##maf version=1 scoring=roast.v3.3 a score=6164.000000 s hg38.chr1_KI270765v1_alt 0 75 + 185285 CTGAACTCTCAATCACATTTAGCGAGACGCTTTTCTAAAGGAATCCTCTAAAGCTAAACATACATTAAATTAAGT s panTro4.chr1_AACZ03149435_random 104813 75 + 173505 ctgaactctccatcacatttagagagacgcttttctaaaggaatcctctaaaactaaACATAAGTTAAATTAAGT i panTro4.chr1_AACZ03149435_random N 0 C 0 a score=26383.000000 s hg38.chr1_KI270765v1_alt 75 144 + 185285 AGAATGCATTATGATTTGCTGTGttttttttttttttattttttttgagacggaggtttttttttttttttttttttttttggctctgttgcccaggctgaagtgcagtggctcgatctcgtctcactgcgacctccgcctccc s panTro4.chr1_AACZ03149435_random 104888 136 + 173505 AGAATGCATTATGATTTGCAGTGtttgtttgt------ttgtttttgagatggagttcttgttttgttttgttttgttttt--ctctgttgcccaggctggagtgcagtggctcgatctcagctgactgcaacctccgcctccc i panTro4.chr1_AACZ03149435_random C 0 I 477 s nomLeu3.chr12 56409081 135 - 109391073 agaatGCATTATGATTTGCTGTGtttttatttatttt-tattttttgagatggaggctttttttttttttttttg--------ctctgctgcccaggctggagtgcagtggctccatctcgtctcactgcaacctccgcccccc i nomLeu3.chr12 N 0 C 0 a score=557409.000000 s hg38.chr1_KI270765v1_alt 219 2121 + 185285 atccgcctgcctcagcctcccaaagtgctaggattacaggcgtgagccaccgcgtccagcCTGCAGTGGTTTTCTTACTACTTTTTACAATCAAATTGATTAAGGCATTGGTTGAATATGGTACACTGCATCCATTTCAAGTTTGATGacatgtctactactccagaaggtcctcttgtgccctttgcagtcagtcccctcgactccctgaccccagcaattaatgatgtattttctgccactatacaggttagtttcacatgttctagaaattcatcttgatggcaccacatagaatgcactcttttcatcactcagcatgaggtttttgagattggcccatgctatctcatgtttccataatttgtcccatcttattgagggtagtactccgttggatgaatatatcacaataggtccattcacctcttgatgcatatgaaccttttccagtttggggactattgtaaacaaagctgctaagaacaagttctttttgtgaatatatgttttGTAAATTCCACTTGTCATTCTTTATTATTAACTGATTTTGTAAAATGATGTCACCTTCACAAGTGCAAAATTCATTCAAATGTTACAGAGGCCTGAAGCATAAGTCTACACAATTTCCTTTGTTATATTTCATAATTAAGGGGAAAAAACTTTATCTGGGATGTTGTTTCCTATCAGCAAATCcttaatgtaagccatacaggatgctagctgtactattagactatcttctgtaatctgtgcaataactctaagaagtacttcgtattattattttcctgtaacactttccaacttgaagcctagcaaattgaaggacctggtcccaggtcaaacagaaggcaagcggcagcgccaggactggaagaaggccttccCAAAGGCAGACAGAAGCTCACGTCTTTGTCAGAACCTCAGT-ATTTCTGATGCGCCTGGAAGCCAATATCCAAGCCGTTCTCAGCCACTGGATTGGTGGGCTGCTTT-GCTCAGAAGCTCCTCGATCAGGAATCCCAAGCATACGTTAGTGATGACGGTCCCAAAACAAGGGACATTTCTTAACCATTCTAAAAACCCGTTTGCTCATCAGTAACGCAATAAGAGTTGCTTTCGGTCTTGGTTCATATATTTTATATTTGAGCAAGGCAATGTCCGCTGCTGGGGTTAGAAGTAAATGGCTCGTCTTCAGCAAACTAGATCAGTCCGTGGGACGTACGGCTTCCACTCGCAGTGTCCTGAACACTGGCTGGGCTTCCTGTGCGTTCTAGCCGGTTTTCTTTGGAGCCGCGGGTTTCTGCACGGCTCCGGGGTCGGGATGGCAGAGGCTTCTCGGAACACGCGGATCTATGAGTGCAGTCCCCGGGGTAGCCACCAGGGAACGCCATAGGCTTTCCCGCTGTGTTCCTCCTTGCCTTTTCCGTTTGGGCCAAGTAGTTTCTATTGACCATGACATTACAGATCAGAAGTGGGTGGGGTCAGAAAACACACCCTGGGAGAAGCTGGCAAAATGCCCAGAACCGCCATCACTAGGCCTGGGGTTTTCTTCTGTAGTGGAATTCTCGTGCTTATGTAGTACAGGGAGGAGCGCAGCGCATTTCCGCCAAGACAGGTGAGTCTGCAGTTCTGACCTGCGGGTCTCGATGAAT-TGCGTTAGGGCCCCTGGGCGCCGGCAGAGCCGATCTCCTACacaaagcaagcgtgttatgtctacaaccgaacggggacactaagaaagagccccaaaggccctgctttcATCCCAAAGAACAGCGCCTGTCTGCGTAGTTTCTACCTTGCTCTATAAGGTGAGAACACCTTCACCGCTGGCACAGAAATCCTACAAACTCCTGTGGGGACCGCGGTTACAAGCAGACGCTGTGTGAAAGGTGACTCTGGGGGCTAGGGAAAAACACGAAGATTTTCACAGAGCGTGAGACCCCAAGAGACTGGAGACCATGGACCAAATTTCTGCGAACAGTAGCCTTATGTAGAAAGAGCTATGCAATCTTCGTGCTAGTTAGCTTGTGATACACATGCTCACAAAGGCTGGCGCTTCCTTCTCCAGTGAAAAGCAAGGCGATATATCACTTCCCGATTCAAAGCATCCAACTG s panTro4.chr1_AACZ03149435_random 105501 2101 + 173505 atccgcctgcctcagcctcccaaagtgcaaggattacaggcgtgagccaccacgtctggccTGCAGTGGTTTTCTTACTACTTTTTACAATCAAATTGATTAAGGCATTGGTTGAATATCGTACAATACatccatttcaagtttcatgacatgtctactactccagaaggtcctcttgtgccctttgcagtcagtcccctcgactccctgaccccagcaattaatgatgtattttctgtcactatacaggttagtttcacctgttctagaaattcaccttgatggcaccacacagaatgcactctttt----------------------gagattcacccatgttatctcatgtttccataatttgtcccatcttactgagggtggtattccattggatgaatatatcacaaaaggtccattcacctcttgatacatatgaactgtttccagtttggggactattgtaaacaaagctgctaagaacaagttctttttgttaatatttgttttGTAAATTCCGTTTGTCATTCTTTAGTATTAACTTATTTTGTAAAAGGACGTAACCTTCATAAGTGCAAAATTCATTCAAATTTTACAGAGGCCTGAAGCAGAAGCCTACACAATTTCCTTTGTTATATTTCATAATTAAGGGGAAAAAACTTTATCTGGGATATTGTTTCCTATCAGCAAATCcttaatgtaagccacacacgatgctagctgtagtattagactatcttctgtaatctgtgcaataactctaagaagtacttcaaattattattttcctgtaacactttccaacttgaagcctagcaaattgaaggacctggccccaggtcaaacagaaggcaagcggcagcgccagtactggaaGAAGGCCTTCCCAAAGGCAGACAGAAGCTCACGTCTTTGTCAGAACCTCGGTTATTTCTGATGCGCCTGGAAGCCAATATCCAAGCCGTTCTCAGCCACTGGATTGGTAGGCTGCTTTTGCTCAGAAACTCCTCGATCAGGAATCCCAAGCATACGTTAGTGATAATGGTCCCGAAACAAGGGACATTTCTTAACCATTCTAAAAACCCGTTTGCTCATCAGTAACGCAATAAGAGTTGCTTTCGGTCTTGGTTCATATATTTTATATTTGAGCAAGGCAATGTCCGCTGCTGGGGTTAGAAGTAAATGGCTCGTCTTCAGCAAACTAGATCAGTCCGTTGGACGTACGGCTTCCACTCGCAGTGTCCTGAACACTGGCTGGGCTTCCTGTGCGTTCTAGCCGGTTTTCTTTGGAGCCGCGGGTTTCTGCACGGCTCCGGGGTCGGGATGGCAGAGGCTTCTCGGAACATGGGGATCTATGAGTGCAGTCCCCGGGGTAGCCACCAGGGAACGCCATAGGCTTTCCCGCTGTGTTCCTCCTTGCCTTTTCCGTTTGGGCCAGGTAGTTTCTATTGACCATGACATTACAGATCAGAAGTGGGTGGGGTCAGAAAACACACCCTGGGAGAAGCTGGCAAAATGCCCAGAACCGCCATCACTAGGCCTGGGGTTTTCTTCTGTAGTGGAATTCTCGTGCTTATGTAGTACAgggaggagcgcagcgcatttccgccaagacaggtgagactgcagttctgacctgcgggcctcgatgaat-tgcgttagggcccctgggcgccggcagagccgatctcctacacaaagcaagcgtgttatgtctacaaccgaacggggacactaagaaagagccccaaaggccctgctttcATCCCAAAGAACAGCGCCTGTCTGCGTAGTTTCTACCTTGCTCTATGAGGTAAGAACACCTTCACCGCTGGCACAGAAATCCTACAAACTCCCGTGGGGACCGCGGTTACAAGCAGACGCTGTGTGAAAGGTGACTCTGGGGGCTAGGGAAAAACACGAAGATTTTCACAGAGCGTGAGACCCCAAGAGACTGGAGACCATGGACCAAATTTCTGCAAACAGTAGCCTTATGTAGAAAGAGCTATGCAATCTTCGTGCTAGTTAGCTTGTGATACACATGCTCACAAAGGCTGGCGCTTCCTTCTCCAGCGAAAAGCAAGGCGATATATCACTTCCCGATTCAAAGCATCCAACTG i panTro4.chr1_AACZ03149435_random I 477 C 0 s nomLeu3.chr12 56409216 2112 - 109391073 atccgcctgcctcagcctcccaaagtgctaggattacaggcgtgagccaccgcttctggcCTGCAGTGGTTTTCTTACTACTTTTTACAATCAAATTGATTAAGGCATTGGTTGAATATGGTACAATGCATCCATTTCAAGTTTGATGacatgtctactactccagaaggtcctcttgtgccctttgcagtcagtcccctcgactccctgaccccagcaattaatgatgtattttctgtcactatacaggttagtttcacctgttctagaaattcaccttaatggcaccacacagaatgcactcttttcgtcactcagcatgaggtttttgagattcgcccatgctatctcatgtttccataatttgtcccatcttattgagggtagtattccactggatgaatatatcacaataggtccattcacctcttgatgcatatgaacctttcccagtttggggactactgtaaacaaagctgctaagaacaagttctttttgtgaatatgtgttttGTAAATTCCATTTGTCATTCTTTAGTATTAACTTATTTTGTAAAAGGATGTCACCTTCACAAGTGCAAAATTCATTCGAATGTTACAGAGGCCTGAAGCAGAAGTCTACACAATTTCCTTTGTTATATTTCATAATTAAGGGGAAAAAACTTCGCCTGGGATATTGTATCCTATCAGCAAATCcttaatgtaagccacacacggtgctagctgtactattagactatcttctgtaatctgtgcaataactctaagaagtacttcgtattattattttcccgtaacactttccaacttgaagcctagcaaattgacggacctggcccaaggtcaaacagaaggcaagtggcagcgccaggactggaaGAAGGCCTTCCCAAAGGCAGACAGAAGCTCACGTCTTTGTCAGAACCTCGGT-ATTTCTGATGCGCCTGGAAGCCAATATCCAAGCCGTTCTCAGCCACTGGATTGGTGGGCTGCTTTTGCTCAGAAACTCCTCGATCAGGAATCCCAAGCATACGTTAGTGATGACGGTCCCGAAACAAGGGACATTTCTTAAACATTCTAAAAACCCGTTTGCTCATCAGTAACGCAATGCAAGTTGCTTTCGGTCTTGGTTCATATATTTTATATTTGAGCTAGGCAATGTCCGCTGCTGGGGTTAGAAGTAAATGGCTCGTCTTCAGCAAACTAGCTCAGTCTGTAGGACGTACGGCTTCCACTCGCAGTGTCCTGAACACTGGCTGGGCGTCCTGTGCGTTCTAGCCGGTTTTCTTTGGAGCCGGGGGTTTCTGCACGGCACCCGGGTCGGGATGGCAGAGGCTTCTCGGAACATGCGGATCTATGAGTGCCGTCCCCGGGGTAGCCAGCAGGGAACGCCACAGGCTTTCCCGCTGTGGTCCTCCTTGCCTTTTCCGTTTGGGCCAGGTAGTTTCTATTGACCAGGACATTACAGATCAGAAGTGGGTGGGGTCAGAAAACACACCCTGGGAGAAGCTGGCAAAATGCCCAGAACCGCCATCACTAGGCCTGGGGTTTTCTTCTGTAGTGGAATTCTCGTGCTCATGTAGCACAgggaggatcgcagcgcatttccgccaagacaggtgagactgcagttctgacctgcgggcctcgatgaatatgcgttagggcacctgggcgccggcagagccgttctcctacacaaagcaagcgtgttatgtctacaaccgaacggggacactaagaaagagtcccaaaggccctgctttcATCCCAAAGAACGGCGCCTGTCTGCGTAGTTTCTACCTTGCTCTATGAGGTGAGAACACCTTCGCCGCTGGTACAGAAATCCTACAAACTCCTGTGGGGACTGCGGTTAGAAGCAGACGCTGTGTAAAAGGTGACTCTGGGGGCTAGGGAAAAACACGAAGATTTTCACAGAGCGTGAGACCCCAAGAGACTGGAGACCATGGACCAAATTTCTGCAAACGGCAGCCTTATGTAGAAAGAGCTATGCAGTCTTCGCGCTAGTTAGCTTGTGATA-----------AAAGGCTGGCGCTTCCTTCTCCAGCGAGAAGCAAGGAGATATATCACTTCCTGATTCAAAGCATCCAACTG i nomLeu3.chr12 C 0 C 0 a score=11327.000000 s hg38.chr1_KI270765v1_alt 2340 11 + 185285 TAAGAATAACA s panTro4.chr1_AACZ03149435_random 107602 11 + 173505 TAAGAATAACA i panTro4.chr1_AACZ03149435_random C 0 C 0 s nomLeu3.chr12 56411328 11 - 109391073 TAAGAATAGCA i nomLeu3.chr12 C 0 I 2 s macFas5.chr13 105382106 11 + 111193037 TAGAAACAACA i macFas5.chr13 N 0 C 0 s papAnu2.chr13 123090910 11 - 128036923 TAGAAACAACA i papAnu2.chr13 N 0 C 0 s canFam3.chr17 60738414 11 - 64289059 TAGAAACAACA i canFam3.chr17 N 0 C 0 a score=1500.000000 s hg38.chr1_KI270765v1_alt 2351 1 + 185285 G s panTro4.chr1_AACZ03149435_random 107613 1 + 173505 G i panTro4.chr1_AACZ03149435_random C 0 C 0 s nomLeu3.chr19 76383134 1 - 81552678 G i nomLeu3.chr19 n 2 I 1 s macFas5.chr13 105382117 1 + 111193037 G i macFas5.chr13 C 0 I 1 s papAnu2.chr13 123090921 1 - 128036923 G i papAnu2.chr13 C 0 I 1 s canFam3.chr17 60738425 1 - 64289059 G i canFam3.chr17 C 0 C 0 a score=1116387.000000 s hg38.chr1_KI270765v1_alt 2352 465 + 185285 -TGTAGGGAGAAAGGTCTATAGTCATGGCAATATTGCCTAA-TGATA--------TTTTTTTCTGTGATGGTCATTTTATAA----------TATTATTTAAAAG-------------------------------TTTTTTTT--AATTAAACAAGCGATGGAACTTTGAacagaaaaatatgaa-------attaa-------------------aacaataaaaattacccataatcacactagactgtgataactaaactgtgaatattttgg-tttcataagcttttaatctttttcct-----taggtatataaaaatatttaagaaccaaagaaaattatatcacaatgggtatatcaacttagtatcagttttactcatttaatatgccaaaggtaacctac---ttatcctttgactacaagagctttctaaatgtctgtataatattacatcagatgaatgcaatataatt---tattttaaata------tttcttattgcatatttagattgtttctaatttttgagtatgatcaacaactctttggcca s panTro4.chr1_AACZ03149435_random 107614 465 + 173505 -TGTAGGGAGAAAGGTCTATAGTCATGGCAATATTGCCTAA-TGATA--------TTTTTTTCTGTGATGGTCattttataa----------tattatttaaaag-------------------------------tttttttt--aattaaaCAAGCAATGGAACTTTGAacagaaaaatatgaa-------attaa-------------------aacaataaaaattacccataatcacactagactgtgataactaaactgtgaatattttgg-tttcataagcttttaatctttttcct-----taggtatataaaaatatttaagaaccaaagaaaattatatcacaatgggtatatcaacttagtatcagttttactcatttaatatgccaaaggtaacctac---ttatcctatgactacaagagctttctaaatgtctgtataatattacatcagatgaatgcaatataatt---tattttaaata------tttcttattgcatatttagattgtttctaatttttgagtatgatcaacaactctttgacca i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chr2a 107051769 466 + 113028656 -TGTAGGGAGAAAGGTCTATAGTCATGGCAATATTGCCTAA-TGATA--------TTTTTTTCTGTGATGGTCattttataa----------tattattttaaag-------------------------------attttttt--aattaaaCAAGCAATGGaattttgaacagaaaaatatgaa-------attaa-------------------aacaataaaaattacccataatcatactagactgtgataaccaaactgtgaatattttgg-tttcataagcttttaatctttttcct-----taggtatataaaaatatttaagaaccaaagaaaattatatcacaatgggtatatcaacttagtatcagttttactcatttaatatgccaaaggtaacctac---ttatcctttgactactagagctttctaaatgtctgtataatattacatcagatgaatgcaacataatt---tattttaaatat-----tttcttattgtatatttagattgtttctaatttttgagtatgatcaacaattctttgacca i ponAbe2.chr2a N 0 C 0 s nomLeu3.chr19 76383136 468 - 81552678 -TGTAGGGAGAAAGGTCTATAGTCATGGCAATATTGCCTAA-TGATAT-----ATTTTTTTTCTGTGATGGTCATTTTATAA----------TACTATTTTAAAG-------------------------------TTTTTTTT--AATTAAACAAGCAATGGAACTTTGAacagaaaaatatgaa-------attaa-------------------aacaataaaaattacccataatcacactagactgtgataaccaaactgtgaatattttgg-tttcataagcttttaatctttttcct-----taggtatataaaaatatttaagaaccaaa-aaaattatatcacaatgggtatatcaacttagtatcagttttactcatttaatatgccaaaggtgacctac---ttatcctttgactacaagagctttctaaatgtctgtataatattacatcagatgaatgcaatataatt---tattttaaatat-----tttcttattgcatatttagattgtttctattttttgagtatgatcaacaattctttgacca i nomLeu3.chr19 I 1 C 0 s rheMac3.chr13 133302015 458 - 137160470 -TGTAGGGAGAAAGGTCTATACTCATGGCAATTTTGCCTAA-TGATA--------TTTTTTTCTGTGCTGGTC--------A----------TATGattttaaag-------------------------------tttttttttaaattaaataaGCAATGGaattttgaacagaaaaatatgaa-------attaa-------------------aacaacaaaaaatacccataatcacactagactgtgataaccaaac--tgagtattttgg-tttcataagtttttaatctttttcct-----tatgtatataAAAATGTTTAAAAACCAAAGAAAATTATATCACAATCGGTATATCAACTTAGTATTAGTCTTACTCATTTAATATGCCAAAGGTAACCTAC---Ttatcctttgactacaatagttttctaaatgtctgtataatattacatcagatgaatgcaatataatt---tattttaaatat-----tttcttattgcatatttagattgtttctaatttttgagtatgaccaacaattctttgacca i rheMac3.chr13 N 0 C 0 s macFas5.chr13 105382119 458 + 111193037 -TGTAGGGAGAAAGGTCTATACTCATGGCAATTTTGCCTAA-TGATA--------TTTTTTTCTGTGCTGTTC--------A----------TATGATTTTAAAG-------------------------------ttttttttttaattaaataagcaatggaattttgaacagaaaaatatgaa-------attaa-------------------aacaacaaaaaatacccataatcacactagactgtgataaccaaac--tgagtattttgg-tttcataagtttttaatctttttcct-----tatgtatataaaaatgtttaaaaaccaaagaaaattatatcacaatcggtatatcaacttagtattagtcttactcatttaatatgccaaaggtaacctac---ttatcctttgactacaagagttttctaaatgtctgtataatattacatcagatgaatgcaatataatt---tattttaaatat-----tttcttattgcatatttagattgtttctaatttttgagtatgaccaacaattctttgacca i macFas5.chr13 I 1 C 0 s papAnu2.chr13 123090923 458 - 128036923 -TGTAGGGAGAAAGGTCTATAGTCATGGCAATTTTGCCTaa-tgata-------ttttttttctgtgctggtc--------a----------tatgattttaaag-------------------------------ttttttttt-aattaaataagcaATGGAATTTtgaacagaaaaatatgaa-------attaa-------------------aacaacaaaaaatacccaTAATCACACTAGACTGTGATAACCAAAC--TGAGTATTTTGG-TTTCAtaagtttttaatctttttcct-----tatgtatataaaaatgtttaaaaaccaaagaaaattatattacaatCGGTATATCAACTTAGTATTAGTCTTACTCATTTAATATGCCAAAGGTAACCTAC---TTATCCTTTGACTACAAGAGTTTTCTAAATGTCTGTATAATATTACATCAGATGAatgcaatataatt---tattttaaatat-----tttcttattgcatatttagattgtttctaatttttgagTATGACCAACAATTCTTTGACCA i papAnu2.chr13 I 1 C 0 s chlSab2.chr14 102031350 458 + 107702431 -TGTAGGGAGAAAGGTCAATAGTCATGGCAATATTGCCTAA-TGATA--------TTTTTTTCTGTGATGGTC--------A----------TATGATTTTAAAG-------------------------------TTTTTTTTTTAATTAAATAAGCAATGGAATTTTGAACAGAAAAATATGAA-------ATTAA-------------------AACAATAATAAATACCCACAAGCACACTAGACTATGATAACCAAAC--TGAATATTTTGG-TTTCATAAGTTTTTAATCTTTTTCCT-----TATGTATATAAAAATGTTTAAAAACCAAAGAAAATTATATCACAATCGGTATATCAACTTAGTATCAGTCTTATTCATTTAATATGCCAAAGGTAACCTAC---Ttatcctttgactacaagagttttctaaatgtctgtataatattacatcagatgaatgcactataatt---tattttaaatat-----tttcttattgcatatttagattgtttctaatttttgagtatgatcaacaattctttgacca i chlSab2.chr14 N 0 C 0 s canFam3.chr17 60738426 491 - 64289059 TTGTGGGTAGAAAGGTCCATGGTCATGGTAATAATGCTTAATTGATATTTTAGTTTTTCCTTCTATGATGCTCATTTCaaaatatataagtttattatttgaaaaatatatgtattttttaaatatagatgtttatttttttCT--GATTAAACAAGCGGTGGAA-TTCAGACAGAAAAACATCAACATTTAGATTAAAAACTAAACACAGAAGTACAATAATAAAAATCCCCCAGTGTCGCACCG-------------------TTCACATTCTGGCTTTCCTGGATCTTT--TCTTTTTTTTGGGGGGGGGTGCATACAAATCCTTAAAAACCAAAGAAAATTAGAGC----------------------------------CACAGAGCATAGCCAGGGTGCCCTGCGTGTTATTCCTGGGCCACAAG-GTCATGTTTATATGTGCATAGTATTCCAGCGGGCAGGTGTGGAGCAGCTGGCGGTTCCACCTGCTGCGGTTCCTCA---------CGGGCTGTCCCTAACTTCTGAGCACCCCAAACA---CTTGGGCCA i canFam3.chr17 C 0 I 26 a score=503866.000000 s hg38.chr1_KI270765v1_alt 2817 211 + 185285 gtattcctatagctaagtgcttatgttgtaggtctgattatttccttag-------------------tacaaatttctaacagtggagtgtcagtcaaagggtatgtacaatgtaaacatgtagatgtgtattgtcaaattatcccccaccaagttcctaaaatatgcatctttactgtcatggtgtaactaccaaagtcctgtacccttgaaaacatag------attcttatt s panTro4.chr1_AACZ03149435_random 108079 211 + 173505 gtattcctatagctaagtgcttatgttgtaggtctgattatttccttag-------------------tacaaatttctaacagtggagtgtcagtcaaagggtatgtacaatgtaaacatgtagatgtgtattgtcaaattatcccccaccaagttcctaaaatatgcatctttactgtcatggtgtaactaccaaagtcctgtacccttgaaaacatag------attcttatt i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chr2a 107052235 211 + 113028656 gtattcctatagctaaaggcttacattgtatgtctgattattcccttag-------------------tacaaatttctaacagtggagtgtcagtcaaagggtaagtacaatgcaaacatttagatgtgtattgtcaaattatcctccactaagttcccaaaatatgcatctttactgtcatggtgtaactacccaagtcctgtacccttgaaaacatag------attattatc i ponAbe2.chr2a C 0 C 0 s nomLeu3.chr19 76383604 217 - 81552678 gtattcctatagctaaatgcttacgttgtatgtctgattatttccttag-------------------tacaaatttctaacagtggagtgtcagtcaaagggtatgtacaatgtaaacatttaaatgtgtattgtcaaattatcctccactaagttcctaaaatatgcatctttactgtcgtggtgtaactacccaagtcctgtacccttgaaaacatagattattattattatt i nomLeu3.chr19 C 0 C 0 s rheMac3.chr13 133302473 217 - 137160470 gtattcctatagctaaatgcttatgttgtatgtctgattatttccttag-------------------tacaaatttctaacagtagagtgtcagtcaaagggtatgtacaatgtaaacatttagatgtgtattgtcaaattatcctccactaagttcctaaaatatgcatctttactgtcttggtgtaactactcaagtcctgtacccttgaaaacatagattattatttttatt i rheMac3.chr13 C 0 C 0 s macFas5.chr13 105382577 217 + 111193037 gtattcctatagctaaatgcttatgttgtatgtctgattatttccttag-------------------tacaaatttctaacagtagagtgtcagtcaaagggtatgtacaatgtaaacatttagatgtgtattgtcaaattatcctccactaagttcctaaaatatgcatctttactgtcttggtgtaactactcaagtcctgtacccttgaaaacatagattattatttttatt i macFas5.chr13 C 0 C 0 s papAnu2.chr13 123091381 213 - 128036923 GTATTCCTATAGCTAAATGCTTATGTTGTatgtctgattatttccttag-------------------taCAAATTTCTAACAGTAGAGT----GTCAAAGGGTATGTACAATGTAAACATTTAGATGTGTATTGTCAAATTATCCTCCACTAAGTTCCTAAAATATGCATCTTTACTGTCTTGGTGTAACTACTCAAGTCCTGTACCCTTGAAAAcatagattattatttttatt i papAnu2.chr13 C 0 C 0 s chlSab2.chr14 102031808 236 + 107702431 gtattcctatagctaaatgcttatgttgtatgtctaattatttccttagtctaattatattccttagttacaaatttctaacagtagagtgtcagtcaaagggtatgtacaatgtaaacatttagatgtgtattgtcaagttatcctccactaagttcctaaaatatgcatctttactgtcttggtgtaactactcaagtcctgtacccttgaaaacatagattattatttttatt i chlSab2.chr14 C 0 C 0 e canFam3.chr17 60738917 26 - 64289059 I a score=3256384.000000 s hg38.chr1_KI270765v1_alt 3028 1347 + 185285 tcagaacatctttatcagtttaaaagataaactatgccatcctcttgttgttagtaa-agt---gcatttctttgattacT-CCCCTTTCACAGAAGAGTAAATGAAGATTCAGTAAGTTTGTGTGAGTTATGCATGGGTGCATAGGT-AACGCGTGCAGAAAGCAAT-CACTTCAGTT--------------TTCCATATTTGAGG------TCCTCTCTGGGCCAGTA-CAGTTCGAGACACTAGAAATTCAAAAC-CACAGATAATGCCCTCCTGGGCCTGTAGGATGTACTTGTTAGGTGGCAGGGGCGAGGCCCAACCAGTGCCCACAACAATGTCATAGCCCCAGGTGAGTGTGGGAGGGGAAGTTGTAGAAATATTTTCCAGCCAAAGAAATCAGTGAAGTAAAGATaggcaggaggcaggcaaaaaggaggcaggactggcaggTTGTGGGGGCAGGAGTGGCCACGGATGAGGAGCCAGGCTTGGCAACACCGGTGCAGGTGGCACGTGTCATAGGCACAGGCGTGGAGATCTGAGGGCGTAGAGGGGAGAAGACCGTGCACCGCCAATGTCAACTGTGTGGAAGCAAACCTGGGCTACATCTAAGAGTCCTGAGAGCAGGGCAGGAGAAGGGAGGAAGAGACAACAGAAGTCCTGGGTGGGAAGCAGAAATATTTCCTGAGTCAATGAAAGAGCCCCAAGCCTCCAGACCTGCCAGGGCTCAAGCAGGCAGCTCCAGATGCCAAGACCTATAATCCAGCAGTTCAGGTTGATTTTGCCAGAGTAGTGTGAAGAGGCCCTGATTTTCCCCTTTAATGTATACCCATACAAAAGGCAGAAGAGTTGTTTGAAAAGCAGGAGATTCACAGTTACAAGCACATAGGAAGCACAAGAAAAACTGGTAGAA--------GGGATCTGGGCCCTTCAATGTTGACAGCCTTCTCTAGGAGCCCTGGCTACAACAGAATGAGAAGGATCCTTG-GGGGGTATAAAAAGGTGGGAAGGAGAACAAGCCAAACAAAACACCACCCTCAGGACTACAGAGAAGTTATTTCAGGCGATGCATTGATTCCATGTTTTTGTTTCCATAGGTTGCTGTTTTGTAAC-TTTTTTTTTCTTAGGTGAAGGAATTAAGTGTCCTCCCCCACTGTCTGAAGAAAGATATGCCTGTCATGAAGCGTGCCCTTACTTACTTTGAAGGGGACAAG----CCTTTTCTAGCTTCAATATTTATTTCCTATTTTGATGGGGAAACCTTTAGGGAAGTAGAAAGAGAGCTTAAAGCCTTGGGGGAGAC-ATTTTACGTGCTTGCTA---AAAAAATGCATTAAAATATTTAGTACATGTCCTGAATGTAACCCAGCCCTCCAGAGCTAT s panTro4.chr1_AACZ03149435_random 108290 1348 + 173505 tcagaacatctttatcagtttaaaagataaactatgccatcctcttgttgttagtaa-agt---gcatttctttgattact-ccccttttacagaagagtaaatgaagattcagtaagtttgtgtgagttatgcatgggtgcatagat-aacgcgtgcagaaagcaat-cacttcagtt--------------ttccgtatttgagg------tccTCTCTGGGCCAGTA-CAGTTCGAGACACTAGAAATTCAAAAC-CACAGATAATGCCCTCCTGGGCCCGTAGGATGTACTTGTTAGGTGGCAGGGGCGAGGCCCAACCAGTGCCCACAACAATGTCATAGCCCCAGGTGAGTGTGGGAGGGGAAGTTGTAGAAATATTTTCCAGCCAAAGAAATCAGTGAAGTAAAGATAGGCAGGAGGCAGGCAAAAAGGAGGCAGAACTGGCAGGTTGTGGGGACAGGAGTGGCCACGGATGAGGAGCCAGGCTTGGCAACACAGGTGCAGGTGGCACGTGTCATAGGCACAGGCGTGGAGATCTGAGGGCGTAGAGGGGAGAAGACCGTGCACCGCCAATGTCAACTGTGTGGAAGCAAACCTGGGCTACATCTAAGAGTCCTGAGAGCAGGGGAGAAGAAGGGAGGAAGAGACAACAGAAGTCCTGGGTGGGAAGCAGAAATATTTCCTGAGTCAATGAAAGAGCCCCAAGCCTCCAGACCTGCCAGGGCTCAAGCAGGCAGCTCCAGATGCCAAGACCTATAATCCAGCAGTTCAGGTTGATTTTGCCAGAGTAGTGTGAAGAGGCCCTGATTTTCCCCTTTAATGTATACCCATACAAAAGGCAGAAGAGTTGTTTGAAAAGCAGGAGATTCACAGTTACAAGCACATAGGAAGCACAAGAAAAACTCGTAGAA--------GGGATCTGGGCCCTTCAATGTTGACAGCCTTCTCTAGGAGCCCTGGCTACAACAGAATGAGAAGGATCCTTGAGGGGGTATAAAAAGGTGGGAAGGAGAACAAGCCAAACAAAACACCACCCTCAGGACTACAGAGAAGTTATTTCAGGAGATGCATTGATTCCATGTTTTTGTTTCCATAGGTTGCTGTTTTGTAAC-TTTTTTTTTCTTAGGTGAAGGAATTAAGTGTCCTCCCCCACTGTCTGAAGAAAGATATGCCTGTCATGAAGCGTGCCCTTACTTACTTTGAAGGGGACAAG----CCTTTTCTAGCTTCGATATTTATTTCCTATTTTGATGGGGAAACCTTTAGGGAAGTAGAAAGAGAGCTTAAAGCCTTGGGGGAGAC-ATTTTACGTGCTTGCTA---AAAAAATGCATTAAAATATTTAGTACATGTCCTGAATGTAACCCAGCCCTCCAGAGCTAT i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chr2a 107052446 1347 + 113028656 tcagaacacctttatcagtttaaaacataaactgtgctatcctcttgttgttaataagggt---gcatttctttgactacT-CGCCTTTTACAGAAGAGTAAATGAAGATTAAGTAAGTTTGTATGAGTTATGCATGGGTGCATAGAT-GATGCGTGCAGAAAGCAAT-CACTTCAGTT--------------TTCCATATTTGAGG------TCCTCTCTGGACCAGTA-CAGTGCGAGACACTAGAAATTCAAAAC-CACAGATAATGCCCTCCTGGGTCTGTAGGGTGTCCTTGTTAGGTGGCAGGGGCGAGGCCCAACCAGTGCCCACAACAATGTCATAGCCCCAGGTGAGTGTGGGAGGGGAAGTTGCAGAAATATTTTCCAGCCAAAGAAATCAGTGAAGTAAAGATAGGCAGGAGGCAGGCAAAAAGGAGGCAGAACTGGCAGGTTTTGGGGGCAGGAGTTGCCATGGATGAGGAGCCAGGCTTGGCAACACAGGTGCAGGTGGCATCTGTCATAGGCACAGGCATGGAGATCTGAGGGCTTAGAGGGGAGAAGACCGTGCACCGCCAATGTCAACTGTGTGGAAGCAAACCTGGGCTGCATCTAAG-GTCCTGAGAGCAGGGGAGGAGAAAGGAGGAAGAGACAACAGAAGTCCTGGGTGGGAAGCAGAAATATTTCCTGAGTCAATGAAAGAGCCCCAAGCCTCCAGACCTGCCAGGGCTCAAGCAGGCAGCTCCAGATGCCAAGACCTATAATCCAGCAGTTCAGGTTGATTTTGCCAGAGTAGTGTGACAAGGCCCTGATTTTCCCCTTTGATGTATACCCATACAAAAGGCAGAAGAGTTGTTTGAAAAGCAGGAGATTCACAGTTACAAGCACGTAGGAAGCACAAGAAAAACTGGTAGAA--------GGGATCTGGGCCATTCAATGTTGACAGCCTTCTCCAGGAGCCCTGGCTGCAACAGAATGAGGAGGATCCTTG-GGGGGTATAAAAAGGTGGGAAGGACAACAAGCCAAACAAAACATCACCCTCAGGACTACAGAGAAGTTATTTCAGGAGATACATTGATTTCATGTTTTTGTTTCCATAGGTTGCTGTTTTGTAACTTTTTTTTTTCTTAGGTGAAAGAATTAAGCGTCCTCCCCCACTGTCTAAAGAAAGATGTGCCTGTCATGAAGCGTGCCCTTACTTACTTTGAAGGGGACAAC----CCTTTTCTAGCTTCAATATTTATTTCCTATTTTGGT-GGGAAACTTTTAGGGAAGTAGAAAGAGAGCTTAAAGCCTTGCGGGAGAC-ATTTTACATGCTTGCTA---AAAAAATGCATTAAAATATTTAGTACATGTCCTGAATGTAACCCAGCCCTCCAGAGCTAT i ponAbe2.chr2a C 0 C 0 s nomLeu3.chr19 76383821 1345 - 81552678 tcagaacatctttatcagtttaaaagataaactatgctatcctcttgttgttagtaaaggt---gcatttctttgattactcccccttttacagaagagtaaatgaagattcagtaagtttgtgtgagttatgcatgggtgcatagat-aatgcgtgcagaaagcaat-cacttcagtt--------------ttccatatttgagg------tccTCTCTGGGCCAGTA-CAGTGTGAGACACTAGAAATTCAAAAC-CACAGATAATGCCCTCCCGGGCGTGTAGGATGTCCTTGTTAGGTGACAGGGGCGAGGCCCAACCAGTGCCCACAACAATGTCACAGCCCCAAGTGAGTGTGGGAGGGGAAGTTGTAGAAACATTTTCCAGCCAAAGAAATCAGTGAAGTAAAGATAGGCAGGAGGCAGGC-AACATGAGGCAGAACT-GCAGGTTGTGGGGGCAGGAG-GGCCATGGATGAGGAGCCAGGCTTGTCAATACAGGTGCAGGTGGCACCTGTCATAGGCACAGGCATGGAGATCTGAGGGCGTAGTGGGGAGAAGACCATGTACCGCCAATGTCAACTGTGTGGAAGCAAACCTGGGCTACATCTAACAGTCCCgagagcagaggaggaaaagagaggaagagacaagagaAGTCCTGGGTGGGAAGCAGAAATATTTCCTGAGTCAATGAAACAGCCCCAAGCCTCCAGACCTGCCAGGACTCAAGCAGGCAGCTCCAGATGCCAAGACCTATAATCCAGCAGTTCAGGTTGATTTTGCCAGAGTAAAGTGAAGAGGCCCTGATTTTCCCCTTCAATGTATACCCGTACAAAAGGCAGAAGAGTTGTTTGACAAGCAGGAGATTCACAGTTACAAGCACATAGGAAGCACAAGAAAAACTGGTAGAA--------GGGATCTGGGGCCTTCAATGTTGACAGCCTTCGCCAGGAGCCCTGGCTACAACAGAATGAGGAGGATCCTTG-GGGGGTGTAAAAAGGTGGGAAGGACAACAAGCCAAACAAAACACCACCCTCAGGACTACAGAGAAGTTATTTCAGGAGATGTATTGATTCCATGTTTTTGTTTTCATAGGTTGCTGTTTTGTAAC--TTTTTTTTCTTAGGTGAAAGAAGTAAGCACCCTCCCCCAGTGTCTAAAGAAAGATATGCCTGTCATGAAGCGTGATCTTACTTACTTTGAAGGGGACAAC----CCTTTTCTAGCTTCAATATTTATTTCCTATTTTGATGGGGAAACTCTTAGGGAAGTAGAAAGAGAGTTTAAAGCCTTGGGGGAGAC-ATTTTACATGCTTGCTA---AAAAAATGCATTAAAATATTTAGTACATGTCCTGAATATAACCCAGCCCTCCAGAGCTAT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr13 133302690 1347 - 137160470 tcagaatatctttatcagtttaaaagataaactatgctatcctcttgttgttaataaaggt---gcatttctttgattacttcccctcttacagaagagtaaatgaagattcagtaagtttgactgacttatgcatgggtgcatagat-aacacatgcagaAAGCAAT-CACTTCAGTA--------------TTCAATATTTGAGG------TCCTCTCTGGGCCAGTA-CAGTGCGAGACACTAGAAATTCAAAAC-CACAGATAATGGCCTCCCGGGCCTATAGGTTGTCCTTGTTAGGAGGCAGGGGCGAAGCCCAACCAGTGCCCACAATGATGTCATAGCCCCAGGTGAGTGTGGGAGGGGAAGCTGTAGAAATATTTTCCAGCCAAAGAAATCAGTGAAGTAAAGATAGGCAGGAGGCAGGCAAAAAGGAGGCAGAACCGACAGGTTGCAGGGGCAGGAGAGGCCATGGAGGAGGAGTCAGGCTTGGCAACACAGGTGTAGGTGGCACCTGTCATAGGCACAGGCGTGGAGATCTGAGGGCTTAGAGGGGAGAAGACCGTGCACTGCCAATGTCAGTTGTGTGGAAGCAAACCTGAGCTACATCTAAGAGTCCTGAGATCAGGGGAGGAGGAGTGGGGAGGAGACAACCGAGGTCCTGGGTGGAAAGCAGAAATACTTCCTGAGTCAAAGAAACAGCCCCAAGCCTCCAGACCTGCCAGGGCTCAAGCAGGCAGCTCCAGATGCCAAGACCTATAATCTAGCAGCTCAGGTTGATTTTGCCAGAGTAGTGTGAAGAGGCCCTGATTTTCCCCTTTGATGTATACCCATACAAAAGGCAGAAGAGTTATTTGAAAAGCAAGAGATTCACAGTTACAAACACATGGGAAGCACAAGAAAAAGTGGTAGAA--------GGGATCTGGGCCCTTCATTGTTGACAGCCTTCTCTAGGATCCCTGGGTATGACAGAATGAGGAGGATCCTTG-GAGGGTATAAAAAGGTTCAAAGGACAACAAGCCAAACAAAACACCACCCTCAGGACTACAGAGAAGTTATTTCAGGAGATGCATTAATTCCATGTTTTTG-TTCCATAGGTTGCTGTTTTGTAAC--TTTTTTTTCTTAGGTGAAAGAATTATGTGTCCTCCCCCACTGTCTAAAGAAAGATATGCCTGTCATGAAGCATGCCCTTACTTACTTTGAAGGGGACAAC----CCTTTTCTAGCTTCAATATTTATTTCCTCTTTTGATGGGGAAACTTCTAGGGAAGTAGAAAGACAGCTTAAAGCCTTGGGGGAGAC-ATTTTCCATGCTTGCTA---AAAAAATGCATTAAAATATTTAGTACATGTCCTGGATGTAACCCAGCCCTCCAGAGCTAT i rheMac3.chr13 C 0 C 0 s macFas5.chr13 105382794 1347 + 111193037 tcagaatatctttatcagtttaaaagataaactatgctatcctcttgttgttaataaaggt---gcatttctttgattacCTCCCCTCTTACAGAAGAGTAAATGAAGATTCAGTAAGTTTGACTGACTTATGCATGGGTGCATAGAT-AACACATGCAGAAAGCAAT-CACTTCAGTA--------------TTCAATATTTGAGG------TCCTCTCTGGGCCAGTA-CAGTGCGAGACACTAGAAATTCAAAAC-CACAGATAATGGCCTCCCGGGCCTGTAGGTTGTCCTTGTTAGGAGGCAGGGGCGAAGCCCAACCAGTGCCCACAATGATGTCATAGCCCCAGGTGAGTGTGGGAGGGGAAGCTGTAGAAATATTTTCCAGCCAAAGAAATCAGTGAAGTAAAGATAGGCAGGAGGCAGGCAAAAAGGAGGCAGAACCGACAGGTTGCAGGGGCAGGAGAGGCCATGGAGGAGGAGTCAGGCTTGGCAACACAGGTGTAGGTGGCACCTGTCATAGGCACAGGCGTGGAGATCTGAGGGCTTAGAGGGGAGAAGACCGTGCACTGCCAATGTCAGTTGTGTGGAAGCAAACCTGAGCTACATCTAAGAGTCCTGAGATCAGGGGAGGAGGAGTGGGGAGGAGACAACCGAGGTCCTGGGTGGAAAGCAGAAATACTTCCTGAGTCAAAGAAACAGCCCCAAGCCTCCAGACCTGCCAGGGCTCAAGCAGGCAGCTCCAGATGCCAAGACCTATAATCTAGCAGCTCAGGTTGATTTTGCCAGAGTAGTGTGAAGAGGCCCTGATTTTCCCCTTTGATGTATACCCATACAAAAGGCAGAAGAGTTATTTGAAAAGCAAGAGATTCACAGTTACAAACACATGGGAAGCACAAGAAAAAGTGGTAGAA--------GGGATCTGGGCCCTTCAATGTTGACAGCCTTCTCTAGGATCCCTGGGTATGACAGAATGAGGAGGATCCTTG-GAGGGTATAAAAAGGTTCGAAGGACAACAAGCCAAACAAAACACCACCCTCAGGACTACAGAGAAGTTATTTCAGGAGATGCATTAATTCCATGTTTTTG-TTCCATAGGTTGCTGTTTTGTAAC--TTTTTTTTCTTAGGTGAAAGAATTATGTGTCCTCCCCCACTGTCTAAAGAAAGATATGCCTGTCATGAAGCATGCCCTTACTTACTTTGAAGGGGACAAC----CCTTTTCTAGCTTCAATATTTATTTCCTCTTTTGATGGGGAAACTTCTAGGGAAGTAGAAAGACAGCTTAAAGCCTTGGGGGAGAC-ATTTTCCATGCTTGCTA---AAAAAATGCATTAAAATATTTAGTACATGTCCTGGATGTAACCCAGCCCTCCAGAGCTAT i macFas5.chr13 C 0 C 0 s papAnu2.chr13 123091594 1346 - 128036923 tcagaatatcttTATCAGTTTAAAAGATAAACTATGCTATCCTCTTGCTGTTAATAAAggt---gcatttctttgattacttcCCCTCTTACAGAAGAGTAAATGAAGATTCAGTAAGTTTGACTGACTTATGCATGGGTGCAGAGAT-AACACATGCAGAAAGCAAT-CACTTCAGTA--------------TTCAATATTTGAGG------TCCTCTCTGGGCCAGTA-CAGTGCGAGACACTAGAAATTCAAAAC-CACAGATAATGGCCTCCCGGGCCTGTAGGTTGTCCTTGTTAGGAGGCAGGGGCGAAGCCCAACCAGTGCCCACAATGATGTCATAGCCCCAGGTGAGTGTGGGAGGGGAAGTTGTAGAAATATTTTCCAGCCAAAGAAATCAGTGAAGTAAAGATAGGCAGGAGGCAGGCAAAAAGGAGGCAGAACCGACAGGTTGCAGGGGCAGGAGAGGCCATGGAGGAGGAGTCAGGCTTGGCAACACAGGTGTAGGTGGCACCTGTCATAGGCACAGGCGTGGAGATCTGAGGGCTTAGAGGGGAGAAGACCGTGCACTGCCAATGTCAGTTGTGTGGAAGCAAACCTGAGCTACATCTAAGAGTCCTGAGATCAggggaggaggagtggggaggagacaACCGAGGTCCTGGGTGGAAAGCAGAAATACTTCCTGAGTCAAAGAAACAGCCCCAAGCCTCCAGACCTGCTGGGACTCAAGCAGGCAGCTCCAGATGCCAAGACCTATAATCTAGCAGCTCAGGTTGATTTTGCCAGAGTAGTGTGAAGAGGCCCTGATTTTCCCCTTTGATGTATACCCATACAAAAGGCAGAAGAGTTACTTGAAAAGCAAGAGATTCACAGTTACAAACACATGGGAAGCACAAGAAAAAGTGGTAGAA--------GGAATCTGGGCCCTTCAATGTTGACAGCCTTCTCCAGGATCCCTGGGTATGACAGAATGAGGAGGATCCTTG-GAGGGTATAAAAAGGTTCGAAGGACAACAAGCCAAACAAAACACCACCCTCAGGACTACAGAGAAGTTATTTCAGGAGATGCATTAATTCCATGTTTTTG-TTCCATAGGTTgctgttttgtaac--ttttttttcttaggtGAAAGAATTATGTGTCCTCCCCCACTGTCTAAAGAAAGATATGCCTGTCATGAAGCATGCCCTTACTTACTTTGAAGGGGACAAC----CCTTTTCTAGCTTcaatatttatttcctcttttgatGGGGAGACTTCTAGGGAAGTAGAAAAACAGCTTAAAGCCTT-GGGGAGAC-ATTTTCCATGCTTgcta---aaaaaatgcattaaaatatttagtacaTGTCCTGGATGTAACCCAGCCCTCCAGAGCTAT i papAnu2.chr13 C 0 C 0 s chlSab2.chr14 102032044 1342 + 107702431 tcagaatatctttatcagtttaaaagataaactatgctatcctcttgttgttaataaaggt---gcatttctttgattacttcccgttttacagaagagtaaatgaagattcagtaagtttgactgacttaggcatgggtgcatagac-aacacctgcagaaagcaat-cacttcagtt--------------ttccatatttgagg------tccTCTCTGGGCCAGTA-CAGTGCGAGACACTAGAAATTCAAAAC-CACAGATAATGGCCTCCCGGGCCTGTAGGTTGTCCTTGTTAGGAGGCAGGGGCGAGGCCCAACCAGTGCCCACAATGATGTCCTAGCCCCAGGTGAGTGTGGGAGGCAAAGTTGTAGAAATAGTTTCCAGCCAAAGAAATCAGTGAAGTAAAGATAGGTGGGAGGCAGGCAAAAAGGAGGCAGAACCGGCAGGTTGCGGGGGCCGGAGGGGCTATGGAGGAGGAGTCAGGCTTGGCAACACAGGTGTAGGTGGCACCTGTCATAGGCACAGGCGTGGAGATCTGCGGGCTTAGAGGGGAGAAGACCGTGCACTGCCAACGTCA---GTGTGGAAGCAAACCTGGGCTACATCTAAGAGTCCTGAGATCAGGGGAGGAGGAGTGGGGAGGAGACAACAGAGGTCCTGGGTGGAAAGCAGAAATACTTCCCGAGTCAAAGAAACAGCCCCAAGCTTCCAGACCTGCCAGGGCTCAAGCAGGCAGCTCCAGATGCCAAGACCTATAATCTAGCAGCTCAGGTTGATTTTGCCAGAGTAGTGTGAAGAGGCCCTGATTTTCCCCTTTGATGTATACCCATACAAAAGGCAGAAGAGTTGTTCGAAAAGCAGGAGATTCACAGTTACAAACACATGGGAAGCACAAGAAAAAGTGGTAGAA--------GGGATCTGGGCCCTTCAGTGTTGACAGCCTTCTCCAGGAGCCCTGGCTATGACAGAATGAGGAGGATCCTTG-GAGGGTATAAAAAGGTGCGAAGGACAACAAGCCAAACAAAACACTACCCTCAGGACTACAGAGAAGTTATTTCAGGAGGTGCATTAATTCCATGTTTTCG-TTCCATAGGTTGCTGTTTCATAAC----TTTTTTCTTAGGCGAAAGAATGATGTGTCCTCCCCCACTGTCTAAAGAAAGATATGCCTGTCGTGAAGCATGCCCTTACTTACTTTGAAGGGGACAAC----CCTTTTCTAGCTTCAATATTTATTTCCTCTTCTGATGGGGAAACTTCTAGGGAAGTAGAAAGACAGCTTAAAGCCTTGGGGGAGAC-ATTTTACATGCTTGCTA---AAAAAATGCATTAAAATATTTAGTACATGTCCTGGATGTATCCCAGCCCTCCAGAGCTAT i chlSab2.chr14 C 0 C 0 s canFam3.chr17 60738943 1127 - 64289059 TCAGAACA-CGTCACCGATTTTACAGAGAG----------CTGCTCGTGGCCGG----GGCTCAGCAGTTCTCCCACCACCCTCTACCGTGCAGG---------------TCGGTGGGCAGGGGCAGCGGATGCAGGTGTGAACACGTGGGAACCCGCGGAGAGCTCTGGACTCCAGCTCATTTGCTGACAGACTCGGTGTTCGAGGCTGAATTTCCCTGTGGCCCAGAAGCAGCGTGAAGCTCTAGGAATGAACAACACATGGACCCTGGGGTCCCGGGCTT-CGGGAACCCCATGTCAGGAGGCCAGGGCGAGGCCCAG--GATGCCTAAGATGACGTGGGGGCCTGCGGTGGGTGTGGGCAGAG-AGATATGGGAAGATTTCCCAGCCAAGGACATTCTTG----AAAGATGGGCAG--TGTCAGCAAAGAGGGGG-------GGCG------AGGGGTGGGGGAGCTGAGTGAGGAGG----AGGCTC-------CAGGTCGGGGGGTT-----------------GTGTGCAGGCCTGAGGGGCTCAGGGGGCCCAG---GTGCA--------GGCAGCAGCCCACAAG---GCCTGGGGTT------GGGGGCTCAAGAGCAGGATGGAATGGGGTGGGGAGAGGCA------GACCCCGGCAGGAAGGAGGAAGGCCCCTCGCCTTGG------GGCCCCAAGTCTTT-GATGAAGCAAGGCTTCCACAGCTGGCCAGGGAGCCCGTGTCCTGCAGCCCAGCTGTT-AGGTGACCGTCCCCGGGGCGGCATTAAGATGCCCTGACCCCCTACTTCCGTG------------------------GTTGTGTGAAGGTCAGGGGGGCC-----TGCGGGCCTGGGCGCTGCCTGGGGGAAGCCCCGAGGGGCCAGCCTGGGGCCTGTGGCATGCAGGGCGGGCAGC------------CCCGGGCCGGGCAGGAAGGAGGTGCCTCCCCG------------------------------AGC--------------CCCCCAGGGCCCCACGGGCGCCTTCCCACAGGCGG--------------------CTCCGTAGGT----------------CCTCCGTCCCGAGGTGAACGAGGCG---GTGCTCC---------------------GGCCTG-------GGCTGCCCCGAGCCCACCAGACGGGGCGGGCGGCTCCTACCCAAGCGCAGATGCCTCCTTCCTGCTCCGAGGGGGACATTTCTAGGGAGCTGGAAAGGGAGCTTAGAGCCTTGAGGGAGACTTTTTTATCCACTTGCTAAAGAAAAAATACATTAAAGTATTTAGTGTATGTGTTGGATGGGGCCCGGCCCTCCCGAGCTAT i canFam3.chr17 I 26 I 644 a score=419479.000000 s hg38.chr1_KI270765v1_alt 4375 184 + 185285 TTTTTTTCTCACtgtattagtccattttcatactgtaataaagaactgcctgagactgggtaatttataaaagaaagagatttaattgactcacagttcagcacggctggggaggcctcaggaaacttacaatcatggtggaaggtgaaggggaagcaaggcaccttctacacaaggtggcaga s panTro4.chr1_AACZ03149435_random 109638 183 + 173505 TTTTTT-CTCACtgtattagtccattttcatactgtaataaagaactgcctgagactgggtaatttataaaagaaagaggtttaattgactcacagttcagcatggctggggaggcctgaggaaacttacaatcatggtggaaggtgaaggggaagcaaggcaccttctacacaaggtggcaga i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chr2a 107053793 183 + 113028656 TTTTTT-CTCACtgtattagtccattttcatagtgcaatatagaactgcctgagactgggtaatctataaaagaaagaagtttaattgactcaccattcagcatggctggggaggcctcaggaaacttacaatcatggtggaaggggaaggggaagcaaggcaccttctacacaaggtggcaga i ponAbe2.chr2a C 0 C 0 s nomLeu3.chr19 76385166 183 - 81552678 GTTTTT-CTTACtgtattagtccatttttatattgcagtaaagaactgcctgagactgggtaatttataaaagaaagaggtttaattgactcacagttcagcatggctggggaggcctcaggaaacttacaatcatggtggaaggtgaagaggaagcaaggcaccttctacacaaggtggcaga i nomLeu3.chr19 C 0 C 0 s rheMac3.chr13 133304037 182 - 137160470 TTTTT--CTCACtgtattagtccattttcatactgcaataaagaactgcctgagacagggcaatttataagagaaacggtttcaattgactcacagttcaacatggctggggaggcctcaggaaacttacaatcatggtggaaggggaaggggaagcaaggcacgttcttcacaaggcggcagg i rheMac3.chr13 C 0 C 0 s macFas5.chr13 105384141 182 + 111193037 TTTTT--CTCACtgtattagtccattttcatactgcaataaagaactgcctgagacagggtaatttataagagaaacggtttcaattgactcacagttcaacatggctggggaggcctcaggaaacttacaatcatggtggaaggggaaggggaagcaaggcacgttcttcacaaggcggcatt i macFas5.chr13 C 0 C 0 s papAnu2.chr13 123092940 182 - 128036923 TTTtt--ctcactgtattagtccatttgcatactgcaataaagaactgcctgagacagggtaatttgtAAGAGAAACGGtttcaattgactcacagttcaacatggctggggaggcctcaggaaacttacaatcatggtggaaggtgaaggggaagcaaggcacgttcttcacaaggcggcagg i papAnu2.chr13 C 0 C 0 s chlSab2.chr14 102033386 182 + 107702431 TTTTT--CTCACtgtattagtccatcttcatactgcaataaagaactgcctgagacagggtaatttataagagaaacggtttcaattgactcacagttcaacatggctggggaggcctcaggaaacttacaatcatggtggaaggtgaaggggaagcaaggcacgttcttcacaaggcggcagg i chlSab2.chr14 C 0 C 0 e canFam3.chr17 60740070 644 - 64289059 I a score=1686580.000000 s hg38.chr1_KI270765v1_alt 4559 554 + 185285 aaggagaagtgctaagcaaaggggaagaagccccttataaaaccatccgatcttgggagaactcactcactatcatgagaacagcatgggggaaaccatccccatgattcaattacctccacctggtctctcctttgacaaatagggattatggggattatggggattacaattcaagatgagatctgggtggggacgtgaagcctaaccatatca-GGGGAGGGGGCTCACAACTGAATATTTCAGATAATTTTAATATGTGCTGGTATCCACAAACAAGAGCCAATGTGGACTCAGCAGGCAATGTCATGGGCCTTCTGTTTCAAAAATGATTCAGATAGACTTTTATGCTTTTACATGTGCCATATgggagtggggcattctcatcttgttccttgttttaccctcagcatctacctttcatagcagtaactgatgatcatgaaatgtttgttgattgaatgGCTGAAGTATAGACAGATGCAGCTTCTGTCCATGAAAGGCATCCTGCTTGCTCCTTGCACTGTGTCCAGTGAAAACTCTTGTTTCTCTGC s panTro4.chr1_AACZ03149435_random 109821 554 + 173505 aaggagaagtgctaagcaaaggggaagaagccccttataaaaccatccgatcttgggagaactcactcactatcatgagaacagcatgggggaaaccatccccatgattcaattacctccacctggtctctcctttgacaaatagggattatggggattatggggattacaattcaagatgagatctgggtggggacacgaagcctaaccatatca-GGGGAGGGGGCTCACAACTGAATATTTCAGATAATTTTAATATGTGCTGGTATCCACAAACAAGAGCCAATGTGGACTCAGCAGGCAATGTCATGGGCCTTCTGTTTCAAAAATGATTCAGATAGACTTTTATGCTTTTACATGTGCCATATGGGAGTGGGGCATTCTCAtcttgttccttgttttaccctcagcatctacctttcatagcagtaactgatgatcatgaaatgtttgttgattgaatgGCTGAAGTATAGACAGATGCAGCTTCTGTCCATGAAAGGCATCCTGCTTGCTCCTTGCACTGTGTCCAGTGAAAACTCTTGTTTCTCTGC i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chr2a 107053976 555 + 113028656 aaggagaagtgctaagcaaaggggaagaagccccttataaaaccatcagatcttgtgagaactcactcactatcatgagaacagcataggggaaaccatccccatgattcaattacctccatctggtctctcctttgacaagtagggattatggggattatggggattacaattcaagatgagatttgggtggggacacaaagccttaccatatcaGGGGGAGGGGGCTCACAACTGAATATTTCAGATAATTTTAATATGTGCTGGTATCCACAAACAAGAGCCAATGGGGACTCAGCAGGCAATGTCATGGGCCTTCTGTTTCAAAAATGATTCAGATAGACTTTTATGCTTTTATATGTGCCATatgggagtggggcattctcatcttgttccttgttttaccctcagcatctacctttcatagcaataactgatgatcatgaaatgtttgttgattgaatgGCTGAAGTATAGACAGATGCAGCTTCTGTCCATGAAAGGCACCCTGCTTGCTCCTTGCACTATGTCCAGTGAAAACTCTCATTTCTCTGT i ponAbe2.chr2a C 0 C 0 s nomLeu3.chr19 76385349 554 - 81552678 aaggagaaatgctaagcaaaggggaagaagccccttataaaaccatcagatcttgtgagaactcactcactatcatgagaacagcatgggggaaaccatccccatgattcaattacctccacctggtctctcctttgacaaataggggttatggggattatggggattacaattcaagatgagatttgggtggggacacaaagcctagccatatcG-GGGGAGGGGGCTCACAACTGAATATTTCAGATAATTTTAATACGTGCTGGTATCCACAAACAAGAGCCAATGTGGACTCAGCAGGAAATGTCATGGGCCTTCTGTTTCAAAAATGATTCAGATAGACTTTTATGCTTTtatatgtgccatatgggtgtggggcattctcatcttgttccttgttttaccctcagcatctacctttcatagcaataactgatgatcatgaaatgtttgttgatcgaatgGCTGAAGTATAGACAGATGCAGCTTCTGTCCATGAAAGGCATCCTGCTTGCTCCTTGCACTATGTCCTGTGAAAACTCTCGTTTCTCTGT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr13 133304219 555 - 137160470 aaggagaagtgccaagcaaaggggaaggacctccttataaaaccatcagatcttgtgagaactcactcactatcatgagaacagcatgggggaaactactcccatgattcaactacctccacctggtctctcctttgacaaatagggattatagggattatagggattacaattcaagatgagattcgggtggggacacaaagcctaaccacatcaGGGGGAGGGGGCTCACAACTGAACATTTCAGATAATTTTAAGATGTGCTGGTATCCACAAACGAGGGGCAATGTGGACTCAGCAGACAATGTCATGGGCCTTCTGTTTCAAAAACGAGTCATAAAGACTTTTATGCTTTTATatgtgccatatgggagtggggcattctcatcttgttccttgtttaaccctcagcatctacctttcatagcaataactgatgatcatgaaatgtttgttaattgaatgGCTGAAGTTTAGACAGACGCTGCTTCTGTCCATGAAAGGCATCCTGCTTGCTCTTTGCCCTGTGTCCAGTGAAAACTCTCATTTCTCTGT i rheMac3.chr13 C 0 C 0 s macFas5.chr13 105384323 555 + 111193037 aaggagaagtgccaagcaaaggggaaggagctccttataaaaccatcagatcttgtgagaactcactcactatcatgagaacagcatgggggaaactactcccatgattcaactacctccacctggtctctcctttgacaaatagggattatagggattatagggattacaattcaagatgagattcgggtggggacacaaagcctaaccacatcaGGGGGAGGGGGCTCACAACTGAACATTTCAGATAATTTTAAGATGTGCTGGTATCCACAAACGAGGGGCAATGTGGACTCAGCAGACAATGTCATGGGCCTTCTGTTTCAAAAACGATTCATAAAGACTTTTATGCTTTTATATGTGCCATATGGGAGTGGGGCATTCTCATCTTGTTCCTTGTTTAACCCTCAGCATCTACCTTTCATAGCAATAACTGATGATCATGAAATGTTTGTTAATTGAATGGCTGAAGTTTAGACAGACGCTGCTTCTGTCCATGAAAGGCATCCTGCTTGCTCTTTGCCCTGTGTCCAGTGAAAACTCTCATTTCTCTGT i macFas5.chr13 C 0 C 0 s papAnu2.chr13 123093122 555 - 128036923 aaggagaagtgccaagcaaaggggaaggagctccttataaaaccatcagatcttgtgagaactcactgactatcatgagaacagcatgggggaaactactcccatgattcaactacctccacctggtctctcctttgacagatagggattatagggattatagggattacaattcaagatgagattcgggtggggacacaaagcctaaccacatCAGGGGGAGGGGGCTCACAACTGAacatttcagataattttaaGATGTGCTGGTATCCACAAACAAGGGGCAATGTGGACTCAGCAGACAATGTCATGGGCCTTCTGTTTCAAAAACGATTCATAAAGACTTTTATGCTTTTATATGTGCCATATGGGAGTGGGACATTCTCATCTTGTTCCTTGTTTAACCCTCAGCATCTACCTTTCATAGCAATAACTGATGATCATGAAATGTTTGTTAATTGAATGGGTGAAGTTTAGACAGATGCAGCTTCTGTCCATGAAAGGCATCCTGCTTGCTCTTTGCCCTGTGTCCAGTGAAAACTCTCATTTCTCTGT i papAnu2.chr13 C 0 C 0 s chlSab2.chr14 102033568 555 + 107702431 aaggagaagtgccaagcaaaggggaaggagctccttataaaaccatcagatcttgtgagaactcactcactatcatgagaacagcatgggggaaactactcccatgattcaactacctccacctggtctctcctttgacaaatagggattatagggattatagggattacaattcaagatgagattcgggtggggacacaaagcctaaccacatcaGTGGGAGGGGGCTCACAACTGAACATTTCAGATAATTTTAAGATATGCTGCTATCCACAAACAAGGGGCAATGTGGACTCAGCAGACAATGTTATGGGCCTTCTGTTTCAAAAACAATTCATATAGACTTTTATGCTTTTATatgtgccatatgggagtggggcattctcatcttgttccttgttttaccctcagcatctacctttcatagcaataactgatgatcatgaaatgtttgttaattgaatggctgaaGTTTAGACAGATGCAGCTTCTGTCCATGAAAGGCATCCTGCTTGCTCTTTGCCCTGTGTCCAATGAAAACTCTCATTTCTCTGT i chlSab2.chr14 C 0 C 0 s calJac3.chr14 5652205 554 - 108792865 aaggagaagtgccaaacaaatggagaagatccctttataaaatcatcagatcttgtgagaactcacacattatcatgagaacagcatggagaaaaccactcccgagattcaattgcctccacctggtctctcccttgacaagtaggaattatagggattatgaggattacgattcaagataagatt-gggtggggacataaagcctaaccatatcaGGGGGAGGGGGCTCACAACTGAATATTACAGATAATTTTAATATGTGCTGGTGTCCACATACACGGGCCAATGTAGACTCAGGAGGCAATGTCACTGGCCTCCTATTTCAAATATGATTTGAATAGGCTTGTATGCTTTTAtatgtgccctgtgggagttgggcattctcatcttcttctttgttttaccctcagcatctacctttcatagcaataactgatgatcatgaaatgtttgttgattgaacgGTTGAAGTATAGACAGATGCAGCTTCTCTCCATGAAAGGCATTCTCCTTGCTCCTTGCCCTGTGTCCAGTGAAAACTCTCATTTCTCTGC i calJac3.chr14 N 0 I 605 e canFam3.chr17 60740070 644 - 64289059 I a score=1171705.000000 s hg38.chr1_KI270765v1_alt 5113 492 + 185285 GCAGCTGCAACACTTTTCACATCACAAGGAGCACAAGGCACTGGCTTCCATTTCCACCCTGAAGCTCAGCAGCCCCATTTGCGTCCCATCAGCTGCCTGCTCCGGAATAGAGGAGGGAAGGGCTGGGCTTCAGAGTTTGCTTTTTTTTCTT-GGTTCTGTGAATGGAAAA-------GGATCCTGTGAAGGGATCCAGATTGATACCTTGGGGTCTGGTGTACGTAGGTCTGTTTGTGTTAACTCACCATTTAAAGACAG-AAAAAAGGAAAACATACATATTTATAGCCTCCTAGAGAGAGCCTTGGTGCTAGTTTTGATGGCTTGCTGGGAACACAAGTGAAGTCAAGGGGGGTATTGTGGTTGGGAGCATTGATTTTGGGAGGAAAGTGGTGCTGGTATCATTTAGGGAGGGACAACAAGATGCTCCTGTGGACCACCACTGATTCTCTCACGCTGATGACATCTGGCAGTAGTGATAATGTGATGGGAGCCCAAAGA- s panTro4.chr1_AACZ03149435_random 110375 499 + 173505 GCCCCTGCAACACGTTTCACATCACAAGGAGCACAAGACACTGGCTTCCATTTCCACCCTGAAGCTCAGCAGCCCCATTTGCGTCCCATCAGCTGCCTGCTCCGGAATAGAGGAGGGAAGGGCTGGGCTTCAGAGTTTGCTTTTTTTTCTT-GGTTCTGTGAATGGAAAATGTCAAAGGATCCTGTGAAGGGATCCAGATTGATACCTTGGGGTCTGGTGTACATAGGTCTGTTTGTGTTAACTCACCATTTAAAGACAG-AAAAAAGGAAAACATACATATTTATAGCCTCCTAGAGAGAGCCTTGGTGCTAGTTTTGATGGCTTGCTGGGAACACAAGTGAAGCCAAGGGGGGTATTGTGGTTGGGAGCATTGATTTTGGGAGGAAAGTGGTGCTGGTATCATTTAGGGAGGGACAACAAGATGCTCCTGTGGACCACCACGGATTCTCTCACGCTGATGACATCTGGCAGTAGTGACAATGTGATGGGAGCCCAAAGA- i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chr2a 107054531 498 + 113028656 GCAACTGCAACAGGTTTCACATCACAAGGAGCACAAGGCACTGG-TTCAACTTCCACCCTGAAGCTCAGCAGCCCCATTTGCAGCCCATCAGCTGCCTGCTCCAGAATAGAGGAGGGAAGGGCTGGGCTTCAGAGTTTGCTTTTTTTTCTC-AGTTCTGTGAATGGAAAATTTCAAAGGATCCTGTGAAGGGATCCATATTGATACCTTGGAGTCCAGTGTACATAGGTCTGTTTGTGTGAACTCACCTTTTAAAGACAG-AAAAAAGTAAAACATATATATTTATAGCCTCCTAGAGAGAGCCTTGGTGCTAGTTTTGATGGCTTGCTGGGAACACAAGTGAAGCCAAGGGGGGTATTGTGGTTGGGAGCATTGATTTTGGGAGGAGAGTGGTGCTGGTATCATTTAGGGAGGGACAACAAGATGCTCCTGTAGACCACCACTGATTCTCTCACGCTGATGACATCTGGCGGTAGTGACAATGTGATGGGAACCCAAAGA- i ponAbe2.chr2a C 0 C 0 s nomLeu3.chr19 76385903 498 - 81552678 GCAACTGCAACAGGTTTCACATCACAAGGAGCACAAGGCACTGGCTTCCATTTCCACCCCGAAGCTCAGTAGCCCCATTTGCAGCCCATCAGCTGCCTGCTCCGGAATAGAGGAGGGAAGGGCTGGGCTTCAGAGTTTGCTTTTTTCTCT---GTTCTGTGAATGGAAAATTTCAAAGGATCCTGTTAAGGGATCTAGATTGATACCTCGGGGTATGGTGTACGTAGGTCTGTTTGTGTGAACTCACCCTTTAAAGACAT-AAAAAAGGAAAACATATATATTTATAGCCTCCTAGAGAGAACCTTGGTGCTAGTTTTGATGGCTTGCTGGGAACACAAGTGAAGCCAAGGGGGATACTGTGGTTGGGAGCATTGATTTTGGGAGGAGAGTGGTGCTGGTATCATTTAGGGAGGGACAACAAGATGTTCCTGTGGACCACCACTGATTCTCTCATGCTGATGATGTCTGGCGGTAGTGACAATGTGATGGGAGCACAAAGAG i nomLeu3.chr19 C 0 C 0 s rheMac3.chr13 133304774 500 - 137160470 GCAACTTCAACAGGTTTCACATCACAAGGAGCACAAGGCACTGGCTTTCATTTCCACCCTGAAGCTCAGCAGCCCCGTTTGCAGCCCATCAACTGCCTGCTCCAGAATAGAGGAGGGAAGGGCTGGG-TTCAGAGTTTGCTTTTTTCCCCTCAGTACTATGAATGGAAAATTTCAAAGGATCCTGTGAAGGGATCCAGATTGATACCTTGGGGTCCAGTGTACGTAGGTCTGTTTGTGTGAACTCACCCTTTAAAGACAGAAAAAAAGGAAAACATATATATTTATAGCTTCCTAGAGAGAGCCTTGGTGCTAGTTTTGATGGCTTGCTAGGAACACAAGTGAAGCCAAGGTGGGTAATGTGGTTGGGAGCACTGATTTTGGGAGGAGGGTGGTCCTGGTGTCATTTAGGAAGGGACAAC-AGATGCTCCTGTGGACCACCACTGATTCTCTCAAGCTGATGACATCTGGTGGTAGTGACAATGTGATGGGAACCCAAAGAG i rheMac3.chr13 C 0 C 0 s macFas5.chr13 105384878 502 + 111193037 GCAACTTCAACAGGTTTCACATCACAAGGAGCACAAGGCACTGGCTTTCATTTCCACCCTGAAGCTCAGCAGCCCCGTTTGCAGCCCATCAACTGCCTGCTCCAGAATAGAGGAGGGAAGGGCTGGGCTTCAGAGTTTGCTTTTTTCCCCTCAGTACTATGAATGGAAAATTTCAAAGGATCCTGTGAAGGGATCCAGATTGATACCTTGGGGTCCAGTGTACGTAGGTCTGTTTGTGTGAACTCACCCTTTAAAGACAGAAAAAAAGGAAAACATATATATTTATAGCTTCCTAGAGAGAGCCTTGGTGCTAGTTTTGATGGCTTGCTAGGAACACAAGTGAAGCCAAGGTGGGTAATGTGGTTGGGAGCACTGATTTTGGGAGGAGGGTGGTCCTGGTGTCATTTAGGAAGGGACAACAAGATGCTCCTGTGGACCACCACTGATTCTCTCAAGCTGATGACATCTGGTGGTAGTGACAATGTGATGGGAACCCAAAGAG i macFas5.chr13 C 0 C 0 s papAnu2.chr13 123093677 502 - 128036923 GCAACTTCAACAGGTTTCACATCACAAGGAGCACAAGGCACTAGCTTTCATTTCCACCCTGAAGCTCAGCAGCCCCGTTTGCAGCCCATCAACTGCCTGCTCCAGAATAGAGGAGGGAAGGGCTGGGCTTCAgagtttgcttttttcccctcagtACTATGAATGGAAAATTTCAAAGGATCCTGTGAAGGGATCCAGATTGATACCTTGGGGTCCAGTGTACGTAGGTCTGTTTGTGTGAACTCACcctttaaagacagaaaaaaaggaaaacatatatatttatagcttCCTAGAGAGAGCCTTGGTGCTAGTTTTGATGGCTTGCTAGGAACACAAGTGAAGCCAAGGTGGGTAATGTGGTTGGGAGCACTGATTTTGGGAGGAGGGTGGTCCTGGTGTCATTTAGGAAGGGACAACAAGATGCTCCTGTGGACCACCACTGATTCTCTCAAGCTGATGACATCTGGCAGTAGTGACAATGTGATGAGAACCCAAAGAG i papAnu2.chr13 C 0 C 0 s chlSab2.chr14 102034123 502 + 107702431 GCAACTTCAACAGGTTTCACATCACAAGGAGCACAAGGCACTGGCTTTCATTTCCACCCTGAAGCTCAGCAGCCCCATTTGCAGTCTATCAACTGCCTGCTCCAGAATAGAGGAGGGAAGGGCTGGACCTCAGAGTTTGCTTTTTTCCCCTCAGTACTATGAATGGAAAATTTCAAAGGATCCTGTGAAGGGATCCAGATTGATACCTTGGGGTCCAGTGTACATAGGTCTGTTTGTGTAAACTCACCCTTTAAAGACAGAAAAAAAGGAAAACATATATATTTATAGCTTCCTAGAGAGAGCCTTGGTGCTAGTTTTGATGGCTTGCTAGGAACACAAGTGAAGCCAAGGCGGGTATTGTGGTTGGGAGCACTAATTTTGGGAGGAGAGTGGTCCTGGTGTCATTTAGGAAGGGACAACAAGATGCTCCTGTGGACCACCACTGATTCTCTCAAGCTGATGACATCTGGCGGTAGTGACAATGTGATGGGAACCCAGAGAG i chlSab2.chr14 C 0 C 0 e calJac3.chr14 5652759 605 - 108792865 I e canFam3.chr17 60740070 644 - 64289059 I a score=3752472.000000 s hg38.chr1_KI270765v1_alt 5605 1509 + 185285 GGGGAGGGTCTTGTAGAAATTTCACGTGGTTGCATCAGCTTCAGCTTTTGGTAACTGG--TGGATAGCCAAGCAGCAGGAGTAGGGCAGAATACCATGAGTCCGTGAACCAGGCAGAGAGTTGAATGACATGAACTTGAGTCAGGGAGGAGAAAACTAGGGGCCGGGTACATCT----TTGATTAGTGAGTAACCAACAATGTGGACCCCCAGAAGGCTTAA-GGCCCTTCGCTGGAGAACTAG-------ATGGTTATCCCTGGGTCCTGTTATTGAGGCTAGCTTCTCTCAAGTTTCAACGCT--------AGTCAGACCACCATATCTAAATCATGGAAAGTGTACCACTGGTTATGTTAAGAGGTGATGTTTGAATATTTAGATGGAGATAATCAAAGTATTACAAAAATGACAAA----GGATTCAATGCAGTAAACAAGTTAATTTACACACCAGAG--TCAAAATTTCACAAATATTATTGCATAGAGTGAAGATAATTTTT-TAAAATTTAAATTAATTTAACAA-AATAAACATAG----TACTTAAATAtggcttttttggtataga----ttattttcttattcaagatttttcct---ttcctagtttataagtattttgttgctattctttcact-------------------ctctgaaaa-ttgcaaaatgcatacttaacttttcaaa-tacaagtttttccaaaaattgtatacatctcct-gaaaacgagtgcctttgaagatggcaactccatttctg-ctccctctaattcacgagttattcttg-acttgttttgtggaattaattagtttc--------------atctttttcttaatggcaaaa------------actacttgtcatgatttttgcatgtttcctaccttcttgatcctcatctttttctctgatttaattacatccttttctgaggatatactgcagataaactctcttt-ttttgtttgcccaagaatgtctgcatttcatcctactcttaaaaagtg---------------------------------------ggtcc-tagaaattctaggttggcaattattttttattagcactttggtgatctcattcttctggcatccgtctttcatcatttctgttgagtagttagtggtcaatgccattctgctgccttgaaagtaagctattttattcactaccttgtggatttatgcatgtgtgtg---gttg-ttctttggttttactattgtttttggttcgtccaactcgccatgacatgttcaagtgtag--------------ttttatgtttgtgtaccct-ctatagatttag-gaacttcccgttggctttcttttgatgtagggtatcagtcattatcttaaaatattacttacaaacgttttctctgttctatgttctttctcctctttgtttaggaatccaagtaaaaatatg----------------------------gtaaaatgtctcactg-cctc--tgttttg------ctgtgatgcattctgcataatttcttctgactgatctttggattcactagtacctactttagctactacaaaatagtg---aacagccattgcatttaaaaatttattttttgcatctttctattttagaaatgttctttgtttcctttttc s panTro4.chr1_AACZ03149435_random 110874 1509 + 173505 GGGGAGGGTCTTGTAGAAATTTCACGTGGTTGCATCAACTTCAGCTTTTGGTAACTGG--TGGATAGCCAAGCAGCAGGAGTAGGGCAGAATACCATGAGTCCGTGAACCAGGCAGAGAGTTGAATGACAGGAACTTGAGTCAGGGAGGAGAAAACTAGGGGCCGGGCACATCT----TTGATTAGTGAGTAACCAACAATGTGGACCCCCAGAGGGCTTAA-GGCCCTTCGCTGGAGAACTAG-------ATGGTTATCCCTGGGTCCTGTTATTGAGGCTAGCTTCTCTCAAGTTTCAATGCT--------AGTCAGACCACCATATCTAAATCGTGGAAAGTGTACCACTGGTTATGTTAAGAGGTGATGTTTGAATATTTAGATGGAGATAATCAAAGTATTACAAAAATGACAAA----GGATTCAATGCAGTAAACAAGTTAATTTACACACCAGAG--TCAAAATTTCACAAATATTATTGCATAGAGTGAAGataaatttt-taaaatttaaattaatttaacaa-aataaaCATAG----TACTTAAATGtggcttttttggtataga----ttattttcttattcaagatttttcct---ttcctagtttataagtattttgttgctattcttttact-------------------ctctgaaaa-ttgcaaaatgcatacttaacttttcaaa-tacaagtttttccaaaaattgtatacatctcct-gaaaacgagtgcctttgaagatggcaactccatttctg-ctccctctaattcacaagttattcttg-acttgttttgtggaattaattagtttc--------------atctttttcttaatggcaaaa------------actatttgtcatgatttttgcatgtttcctaccttcttgatcctcatctttttctctgatttaattacatccttttctgaggatatgctgcagataaactctcttt-ttttgtttgcccaagaatgtctgcatttcatcctactcttaaaaagtg---------------------------------------ggtcc-tagaaattctagcttggcaattattttttattagcactttggtgatctcattcttctggcatctgtctttcatcatttctgttgagtagttagtggtcaatgccattctgccgccttgaaagtaagctgttttattcactaccttgtggatttatgcatgtgtgtg---gttg-ttctttggttttactattgtttttggttcgtccaactcaccatgacatgttcaagagtag--------------ttttatgtttgtgtaccct-ctatagatttag-gaacttcccgttggctttcttttgatgtagggtatcagtcattatcttaaaatattacttacaaacgttttctctgttctatgttctttctcctctttgtttaggaatccaagtaaaaatatg----------------------------gtaaaatgtctcactg-cctc--tgttttg------ctgtgatgcattctgcataatttcttctggctgatctttggattcaccagtacctactttagctactacaaaatagtg---aacagccattgcatttaaaaatttattttttgcatctttctattttagaaatgttctttgtttcctttttc i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chr2a 107055029 1512 + 113028656 GATGAGGGTCTTGTAGAAATTTCACGTGGTTGCATCAACTTCAGCTTTTGGTTACTGG--TGGATAGCCAAGCAGCAGGAGTAGGGCAGAATACCATGAGCCCGTGAACCAGGCAGAGAGTTGAATGACATGAACTTGAGTCAAGGAGGAGAAAACTAGGGGCGGGGCACATCT----TTGATTAGTGAGTAACCAACAATGTGGACCCCCAGAGGGCTTAA-GGTCCTTCTCTGAAGAACTAG-------ATGGTTATCCCTGGGTCCTGTTATTGAGGCTAGTTTCTCTCAAGTTTCAACCCT--------AGTCAGATCACCATATCTAAATCATGGAAAGTGTACCACTGGTTACGTTAAGAGGTGATGTTTGAATATTTAGATGGAGATAATCAAAGTATTACAAAAATGACAAA----GGATTCAATACAGTAAACAAGTTAATTTACACACCAGAG--TCAAAATTTCACAAATAATATTGCATAAAGTGAAGataaatttt-taaaatttaaattaatttaacaa-aataaaCATAG----TACTTAAATGTGGCTTTTTTGGTATAGA----TTATTTTCTTAGTCAAGATTTTTCCT---TTCCTAGTTTATAAGTATTTTGTTGCTATTCTTTCACT-------------------CTCTGAAAA-TTGCAAAATGTATACGTAACTTTTCAAA-TACAAGTTTTTCCAAAAATTGTATACATCTCCT-GAAAATGAGTACCTTTGAAGATGGCAGCTCCATTTCTG-CTCCCTCTAATTCACGAGTTATTCTTG-ACTTGTTTTGTGGAATTAATTAGTTTC--------------ATCTTTTTCTTAATGGCAAAA------------ACTATTTGTCATGATTGTTGCATATTTCCTACCTTCTTGATCCTCATCTTTTTCTCTGATTCAATTACATCCTTTTCTGAGGATAtgctgcagataaactctcttt-ttttgtttgctgaagaatgtctgcatttcatcctactcttaaaaagtg---------------------------------------ggtcc-tagaaattctaggttggcaattattttttattagcactttggtgatctcgttcttctggcatccgtctttcatcatttctgttgagtagttagtggtcaatgccattctaccgccttgaaagtaagctgttttattcactaccttgtggatttatgcatgtgtgtg---gttgtttctttggttttactattgtttttggttcatccaactcaccatgacatgttcaagtgtag--------------ttttatgtttgtttaccct-ctataggtttat-gaacttccccttggctttcttttgatgtaaggaatcagccactatcttaaaatgttacttacaaatattgtctctgctctatgctctttctcctctttgtttaggaatccaagtaaaaatatg----------------------------gtaaaacatctcactg-cctctgtgtcttg------ctgtgatgcattctgcataatttcttctgactgatctttggatttgctaatacctactttagctacttcaaaatagtg---aacaaccattgcatttaaaaatttattttttgcatctttctgttttagaaatcttctttgtttcctttttc i ponAbe2.chr2a C 0 C 0 s nomLeu3.chr19 76386401 1507 - 81552678 GGGGAGGGTCTTGTAGAAATTTCACGTGGTTGCATCACCTTCAGCTTTTGGTAACTGG--TGGATAGCCAAGCAGCAGGAGTAGGGCAGAATACCATGAGCCCGTGAACCAGGCAGAGAGTTGAATGACATGAACTTGAGTCAGGGAGGAGAAAACTAGGGGCGGGGCACATAT----TTGATTAGTGAGTAACCAACAATGTGGACCCCCAGAGGGCTTAA-GGCCCTTCTCTGAAGAACTAG-------ATGATTATCCCTGGGTCCTGTTATTGAGGCTAGTTTCTCTCAAGTTTCAACCCT--------AGTCAGATCACCATATCTAAATCATGGAAAGTGTACCACTGGTTATGTTCAGAGGTTATGTTTGAATATTTAGATGGAGATAATCAAAGTATTACAAAAATGACAAA----GGATTCAATGCAGTAAACAAGTTAATTTACACACCAGAG--TCAAAATTTCACAAGTATTATTGCATAGAGTGAAGATAAATTTT-TAAAATTTAAATTAACTTAACAA-AATAAACATAG----TACTTAAATGtggcttttttcatataga----ttattttcttattcaagatttttcct---ttcctagtttataagtattttgttgctattctttcact-------------------ctctgagta-ttgcaaaatgcatacttaacttttcaaa-tacaagtttttccaaaaattgtgtacttctcct-gaaaacgagtacctttggagatggcaactccatttctg-ctccctctaattcatgagttattcttg-acttgttttgtggaattaattagtttc--------------atctttttcttaATGGCAAAA------------ACTATATGTCATGATTTTTGCATGTTTCCTACCTTCTTGATCCTCATCTTTTTCTCTGATTTAATTACAtccttttctgaggatatgctgcagataaactctcttt-ttttgtttgcccaagaatgtctgcatttcaccctactcttaaaaagtg---------------------------------------ggtcc-tagaaattctaggttggcaattattttttattagcactttggtgatctcattcttctggcatcagtctttcatcatttctgttgggtagttagtggtcaatgccattctaccgccttgaaagtaagctgttttattcactaccttgtggatttatgcatgtgtgtg---gttgtttctttggttttactattgtttttggttcatccaactcaccatgacatgttcaagtgtag--------------ttttatgtttgtttaccct-ctatagatttat-gaacttccccttggctttcttttgatgtaaggaatcagtcactatcttaaaatattacttaccaatattgtctctgttctatgctctttctcctctttgtttaggaatccaagtaaaaatatg----------------------------gtaaaacgtctcactg-cctctgtgtcttg------ct-tgatgcattctgcataatttcttctgactgatctttggattcactaatacctactttagctacttcaaaatagtg---aacagccattgcatttaaaaatttattttttgcatctttctattttagaaatgttc----tttcctttttc i nomLeu3.chr19 C 0 C 0 s rheMac3.chr13 133305274 1546 - 137160470 GGGGAGGGTC-TGTAGAAATTTCACGTGGTTGAATCAACTTCAGCTTTTGGTAACTGG--TGGACCGCCAAGCAGCACGAGCAGGGCAGAACACCATAAGTCCGTGAACCGGGCAGTGAGTTGAATGACATGAACTTGAGTCAGGGAGGAGAAAACTAGGGGCAGGGCACATCT----TTGATTAGTGAGCAGCCAACAGGGTGGACCCCCAGAGGGCTTAA-GGCCCTTCTCTGAAGAACTAG-------ATGGTTATCCCTGGGTCCTGTTATTGAGGTTAGTTTCTCTTAAGTTTCAACCCC--------AGTCAGATCACCGTATCTAAATCATGGAGACTGTACCACCGGTTGTGTTAAGAGGTGATGTTTGAATATTTAGATGAAGATAATCAAAGTATTACAAAAATGACAAA----GGACTCAATGGAGTAAACAAGTTAATTTACACACCAGAG--TCAAAATTTCACAAATATTATTGCATAGAGTGAAGataaatttt-taaaatttaaattaatttaacaa-aataaaCATAG----TACTTAAATGtggctttttttgtacaga----ttattttcttattcaatattcttcct---ttcctagtttataagtattttgctgctattcttttatt-------------------ctctgaaaa-ttgcgaaatgcatacttaacttttcaaa-tacaagtttttccaaaatttgtatacatttcct-gaaaacaagtacctttgaagatggcgactccatttctg-ctccctctaattcacgagttattcttg-acttgctttgtggaattggttagtttc--------------atttttttcttaATGGCAAAA------------AGTATTTGTCATGAtttttgcatgtttcctaccttcttgatcctcatctttttctctgatttaattatat-cttttctgaagttatgctacagataaactctcttt-ttttgtttgcccaagaatgtctccatttcatcctaccattAAAAAGTGGGTCCCAAGAATGTCTCCATTTCATCCTACCCTTAAAAAGGTCC-tagaacttctaggttggcaattattttttaatagcactttggagatctcattcttctgccatccgtctttcatcatttctgttgagaacctagtggtcaatgtcattctgccaccttgaaagtaagatgttttattcactaccttgtggatttatgcatgtgtgtg---gttgtttctttggttttacctttatttttggttcatccaactcatcctgacatgttcaagtgtag--------------ttttatgtttgtttaacct-ctgtagatttag-gaacttcccactggctttcccttgatgtagggaatcagtcattatcttaaaatattacttacaaatattgtctctgttctatattctttctcctctttggttaggaatccaagtaaaaatatg----------------------------gtaaaatgtctcactg-cctatgtattttg------ctgtgatgcattctgcataatttcttctgactgatctttggattcactaatacctactttagctatttcaaaacagtg---aacagctatagcatttaaaaatttattttttgcatctttc---tttagaaatgttctttgtttcctttttc i rheMac3.chr13 C 0 C 0 s macFas5.chr13 105385380 1508 + 111193037 GGGGAGGGTC-TGTAGAAATTTCACGTGGTTGAATCAACTTCAGCTTTTGGTAACTGG--TGGACCGCCAAGCAGCACGAGCAGGGCAGAACACCATAAGTCCGTGAACCGGGCAGTGAGTTGAATGACATGAACTTGAGTCAGGGAGGAGAAAACTAGGGGCAGGGCACATCT----TTGATTAGTGAGCAGCCAACAGGGTGGACCCCCAGAGGGCTTAA-GGCCCTTCTCTGAAGAACTAG-------ATGGTTATCCCTGGGTCCTGTTATTGAGGCTAGTTTCTCTTAAGTTTCAACCCC--------AGTCAGATCACCGTATCTAAATCATGGAGACTGTACCACCGGTTGTGTTAAGAGGTGATGTTTGAATATTTAGATGAAGATAATCAAAGTATTACAAAAATGACAAA----GGACTCAATGGAGTAAACAAGTTAATTTACACACCAGAG--TCAAAATTTCACAAATATTATTGCATAGAGTGAAGATAAATTTT-TAAAATTTAAATTAATTTAACAA-AATAAACATAG----TACTTAAATGtggctttttttgtacaga----ttattttcttattcaatattcttcct---ttcctagtttataagtattttgctgctattcttttatt-------------------ctctgaaaatttgcgaaatgcatacttaacttttcaaa-tacaagtttttccaaaatttgtatacatttcct-gaaaacaagtacctttgaagatggcgactccatttctg-ctccctctaattcacgagttattcttg-ACTTGCTTTGTGGAATTGGTTAGTTTC--------------ATTTTTTTCTTAATGGCAAAA------------AGTATTTGTCATGATTTTTGCATGTTTCCTACCTTCTTGATCCTCATCTTTTTCTCTGAtttaattatat-cttttctgaagttatgctacagataaactctcttt-ttttgtttgcccaagaatgtctccatttcatcctacccttaaaaagtg---------------------------------------ggtcc-tagaacttctaggttggcaattattttttaatagcactttggagatctcattcttctgccatccgtctttcatcatttctgttgagaacctagtggtcaatgtcattctgccaccttgaaagtaagatgttttattcactaccttgtggatttatgcatgtgtgtg---gttgtttctttggttttacctttatttttggttcatccaactcatcctgacatgttcaagtgtag--------------ttttatgtttgtttaacct-ctgtagatttag-gaacttcccactggctttcccttgatgtagggaatcagtcattatcttaaaatattacttacaaatattgtctctgttctatattctttctcctctttggttaggaatccaagtaaaaatatg----------------------------gtaaaatgtctcacta-cctatgtattttg------ctgtgatgcattctgcataatttcttctgactgatctttggattaactaatacctactttagctatttcaaaacagtg---aacagctatagcatttaaaaatttattttttgcatctttc---tttagaaatgttctttgtttcctttttc i macFas5.chr13 C 0 C 0 s papAnu2.chr13 123094179 1501 - 128036923 GGGGAGGGTC------AAATTTCACGTGGTTGAATCAACTTCAGCTTTTGGTAACTGG--TGGACAGCCAATCAGCACGAGCAGGGCAGAACACCATGAGTCCGTGAACCGGGCAGTGAGTTGAATGACATGAACTTGAGTCAGGGAGGAGAAAACTAGGGGCAGGGCACATCT----TTGATTAGTGAGCAGCCAACAGGGTGGACCCCCAGAGGGCTTAA-GGCCCTTCTCTGAAGAACTAG-------ATGGTTATCCCTGGGTCCTGTTATTGAGGCTAGTTTCTCTTAAGTTTCAACCCC--------AGTCAGATCACCATATCTAAATCATGGAGACTGTACCACCGGTTGTGTTAAGAGGTGATGTTTGAATATTTAGATGAAGATAATCAAAGTATTACAAAAATGACAAA----GGACTCAATGGAGTAAACAAGTTAATTTACACACCAGAG--tcaaaatttcacaaatattattGCATAGAgtgaagataaatttt-taaaatttaaattaatttaacaa-aataaacatag----tacttaaatgtggcttttttGGTacaga----ttattttcttattcaataTTCTTCCT---TTCCTAGTTTATAAGTATTTTGCTGCTATTCTTTTATT-------------------CTCTGAAAA-TTGCGAAATGCATACTTAACTTTTCAAA-TACAAGTTTTTCCAAAATTTGTATACATTTCCT-GAAAACAAGTACCTTTGAAGATGGCGACTCCATTTCTG-CTCCCTCTAATTCACGAGTTATCCTTA-ACTTGCTTTGTGGAATTgattagtttc--------------atttttttcttaatggcaaAA------------ACTATTTGTCATGATTTTTGCATGTTTCCTACCTTCTTGATCCTCATCTTTTTCTCTGATTTAATTATAT-CTTTTCTGAAGTTATGCTACAGATAaactctc-tt-ttttgtttgccCAAGAATGTCTCCATTTCATCCTACCCTTAAAAAGTG---------------------------------------GGTCC-TAGAAATTCTAGGttggcaattattttttaatagcacTTTGGAGAACTCATTCTTCTGCCATCCGTCTTTCATCATTTCTGTTGAGAACCTGGTGGTCAATGTCATTCTGCCACCTTGAAAGTAAGATGTTTTATTCACTACCTTGTGGATTTATGCATGTGTGTG---GTTGTTTCTTTggttttacctttatttttggTTCATCCAACTCATCCTGACATGTTCAAGTgtag--------------ttttatgtttgtttaacCT-CTGTAGATTTAG-GAACTTCCCACTGGCTTTCCCTTGATGTAGGGAATCAGtcattatcttaaaatattacttaCAAATATTGTCTCTGTTCTatattctttctcctctttgtttAGGAATCCAagtaaaaatatg----------------------------gtaaaatgtCTCACTG-CCTATGTATTTTG------CTGTGATGCATTCTGCATAATTTCTTCTGACTGATCTTTGGATTCACTAATACCTACTTTAGCTATTTCAAAACAGTG---AACAGctatagcatttaaaaatttattttttgcatctttc---tttagaaatgttctttgtttcctttttc i papAnu2.chr13 C 0 C 0 s chlSab2.chr14 102034625 1506 + 107702431 GGGGAGGGTC-TGTAGAAATTTCACGTGGTTGAATCAACTTCAGCTTTTGGTAACTGG--TGGACAGCCAAGCAGCACGAGCAGGGCAGAACACCATAAGTCCGTGAACCGGGCAGTGAGTTGAATGACATGAACTTGAGTCAGGGAGGAGAAAACTAGGGGCAGGGCACATCT----TTGATTAGTGAGCAACCAACAGGGTGGACCTTCAGAGGGCTTAA-GGCCCTTCTCTGAAGAACTAG-------ATGGTTATCCCTGGGTCCTGTTATTGAGGCTAGTTTCTCTTAAGTTTCAACCCC--------AGTCAGATCACCATATCTAAATCATGGAGACTGTACCACCGGTTGTGTTAAGAGGTGATGTTTGAATATTTAGATGAAGATAATCAAAGTATTACAAAAATGACAAA----GGATTCAATGGAGTAAACAAGTTAATTTACACACCAGAG--TCAAAATTTCACAAATATTATTGCATAGAGTGAAGATACATTTT-TTAAATTTAAATTAATTTAACAA-AATAAACATAG----TACTTAAATGtggcttttttggtacaga----ttattttcttattcaatattcttcct---ttcctagtttataagtattttgctgctattcttttatt-------------------ctctgaaaa-ttgcgaaatgcatacctaacttttcaaa-tacaagtttttccaaaatttgtatacatctcct-gaaaacaagtacctttgaagatggtgactccatttctg-ctccctctaattcatgagttattcttg-acttgctttgtggaattgattagtttc--------------atttttttcttaATGGCAAAA------------ACTATTTGTCATGAtttttgcatgtttcctaccttcttgatcctcatctttttctctgatttaatgatat-cttttctgaagttatgctgcagataaactctc-tt-ttttgtttgcccaagaatgtctccatttcatcctacccttaaaaagtg---------------------------------------ggtcc-tagaaattctaggttggcaattattttttattagcacttttgagatctcattcttctggtatccgtctttcatcatttctgttgagtacctggtggtcaatgccattctgccaccttgaaagtaagctgttttattcactaccttgtggatttatgcatgtgtgtg---gttgtttctttggttttacttttatttttggttcatccaactcaccatgacatgttcaagtgtag--------------ttttatgtttgtttaacct-ctgcagatttag-gaacttcccactagctttcccttgatgtagagaatcagtcattatcttaaaatattacttacaaatactgtctctgttctatgttctttctcctctttgtttaggaatccaagtaaaaatatg----------------------------gtaaaatgtctcactg-cctctgtgttttg------ctgtgatgcattctgcataatttcttctgactgatctttggattcactaatacctactttagctatttcAAAACAGTG---AACAGCCATAGCATTTAAAAATTTATTTTTTGCATCTTTC---TTTAAAAATGTTCTTTGTTTCCTTTTTC i chlSab2.chr14 C 0 C 0 s canFam3.chr17 60740714 1583 - 64289059 GGGGCGGCTCTCCTCGGAACTTCAC-TGGTCGCGCCAACTTCACCTTCTGGCGACTGGACCGGAGATCGAGGCAGCTGGAGCCGAGCCGACTCCT-------------CCAGGACAGCAGGTGGCTGGCCCGAGC----GTCCTGGGGTGTGAGGC--GCCGCCGGGTAGGCCTGGTGCTGCTCAGAGGGC-GCTGACCTGG-----CCTCAGGGTGCAGGGTGGCCCTCTTCTGACCCGCTGGCAGTGAAACCACCATCCC---------CTGTTGAGGCTGATTTCCCCTATGGTTCCACCCCACCCACCGAGTCAGGACCCCA-GCGTCAAGCGTAGGAAGCAGAGCATGGGGTTTCCCAGATGGTGATG--AGGATGGCTGCATGATAAAACACAAAACAGAACAGAACACGCAAATAATGGATTTAACGTATTAAACAAGTTACCCCACACATCAGAATCTCAGAATTCCATGAGCCTTGTTGCAAAGAGTAAAGAGACATTTTCTAGAAAGTACATGGGTTTAGAAACAATGAAAATAGGTATGACTTGAATGtggctttttttggagagagaggttatcttctcattgca-atcttttctgaatccctactatctaaacactttgtggctattcttttttttttttttttttggtaggtcctttgaaaa-tcaataaatacatatttagcttttcaaagtatacatttcattcgaaattttatccatctcctggaaaatcagtacctttgaagattctaactccgtttctaccttcttccaattcctacgctactcatgtatttG------GCACTTGGCTTCTTTCTCTTCACCTTTCGGATTATTTCTCTTATGTctacatatttactgctttcttcttctttttaattttttttatttaccattttcttaatcttcgcc--ttccactgccttaattgtatccgttaatgagaatccgctcttgatacactctcttcgtttggtttgtctaaaaacgtctttgtctggccctgttcttgggaggca---------------------------------------tttccttggaggttctaggaaggtatttattttactttagcacctgggagctgagattccactggtgtccgtcctctagtgctactgctgacaagtcagtggtcagcatcact-------cttgaaggaaagctgttttGCTCAGGGTCCTGGG----TGTGTGTGTGTGTGCACGTGGTGTGTTTAGATGTCCC---GTCTCCGATTTTTACAGTACGCGATGCCATGTTCAAGTACTGCGttttttttttttttttttttttGTGGGTCCTGCTACACATTTGGAGAGCTCCTTGTGTGCTGGCTGGGGACAT----CCTCAGCCACAACCTTAGCCTATTTCCCAGCAGGGTCACCCTTGCTCCATGCTCTTTCTCCTCCCC-TGCGGGGACCCAGGGGGGTGCATGTGGACGCTTCCCCCGTGTTGTCCGAGTTGCTAAGTTCCTTACTGATCTCCACGTCTTTGCGCACCTGTGATGCCTGCCGCGTCACTTCTTCGGCC---------AACTTCCTGGCAGAAACTCAAGCTGTTTCAGGGCCAAGTTCAAGAGCCGTGAATTTT--ACATCGGTTACTGGTGTCGTTCAGTATGAGGCGT-TTCATTGTTTCCTTTTTC i canFam3.chr17 I 644 C 0 e calJac3.chr14 5652759 605 - 108792865 I a score=2425512.000000 s hg38.chr1_KI270765v1_alt 7114 1054 + 185285 acacattccagtcatttAAAAAATATttattttattttagattcaaggggtccatgtgaatgtttgttaaatgggtatattgcatactggtggggattgggcttctagttcacccattacccaaataatgaatattgtacctaataggtagtttttcaacactcacatcctctcccctttgggaaacctcagtgtctattatttccatctttatgcccatgtgtaccaattgtttagcttccacttgtatgtgagaatatgcagtattttattttctgtttctgagttaattcacttagaataatggtctacacctccatccatgttgcttcaaaggacatgatttcattcttttttatggtggtgtagtattacatgatgtgtatatatatcacattttctttatccaatcaattattgatggacccataggttagacttaggttggttccgtgactttgctattgtcatggtattgtcctataatgatttgttttcctttgggtaggtgtccagttatgaatatttctgggtcaaagggtagttctgttttcagttctttgagatatcttcatactgttttccatagagcttgaactaatttatattcccaccaatagtgtataagcattctctctt-------tgctctgcatccaagtcaacctctgttt--ttttcttttttca--------actttttaataacagccattctgac-----taagatgatatctcattg------tggttttaatgagcatttctttaatgattagtgattctgagca-ttttttcctgtgtttgttggctgcttgca---ttttttttttgaaaaatgtctgttcatgtcctttgcccagtttttaatggggttgtttctttttctcttcttgaattctttgaggtccttgtagattcttgatattagtcctttgtcagagacatattttgcaaTTCTGTTTTTTTTTtttttcaagcatggcgagaaagattttattcaggaccagagcaatagttacagggaccactgaaatgttgtctgacagtggggaagagagattCTATGCTGGTCATTTTTA s panTro4.chr1_AACZ03149435_random 112383 1061 + 173505 acacattccagtcatttaaaaaatatttattttattttagattcaaggggtccatgtgaatgtttgttaaatgggtataatgcatactggtggggattgggcttctagttcacccattacccaaataatgaatattgtacctaataggtagtttttcaacactcacatcctctcccctttgggaaacctcagtgtctattatttccacctttatgcccatgtgtaccaattgtttagcttccccttgtaggtgagaatatgcagtattttattttctgtttctgagttaattcacttagaataatggtctacacctccatccatgttgcttcaaaggacatgatttcattcttttttatggtggtgtagtattacatgatgtgtatatatatcacattttctttatccaatcaattattgatggacccataggttagacttaggttggttccgtgactttgctattgtcatggtattgtcctataatgatttgttttcctttgggtaggtgtccagttatgaatatttctgggtcaaatggtagttctgttttcagttctttgagatatcttcatactgttttccatagagcttgaactaatttatattcccaccaatagtgtataagcgttctctctt-------tgctctgcatccaagtcaacctctgttt--ttttcttttttca--------actttttaataacagccattctgactgatataagatgatatctcattg------tggttttaatgagcatttctttaatgattagtgattctgagca-ttttttcatgtgtttgttggctgcttgcatttttttttttttgaaaaatgtctgttcatgtcctttgcccagtttttaatggggttgtttctttttctcttcttgaattctttgaggtccttgtagattcttgatattagtcctttgtcagagacatattttgcaaTTCTG-TTTTTTTTtttttcaagcatggcgagaaagattttattcaggaccagagcaatagttacagggaccactgaaatgttgtctgacagtggggaagagagattCCATGCTGGTCATTTTTA i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chr2a 107056541 1060 + 113028656 acacattccagtCATTTAAAAAATATTTACtttattttagattcaaggggtacatgtgaatgtttgttacatgggtatattgcatactggtggggattgggcttctagttcacccattacccaaataatgactattgtacctaataggtagtttttcaacactcacatcctctcccctttggggaacctcagtgtctattatttccatctttatgcccatgtgtaccaattgtttagcttccacttgtaggtgagaacatacaatattttattttctgtttctgagttaattcacttagaataatggtctccacctccatccatgttgcttcaaaggacctgatttcattcttctttatggtggtgtagtattacatggcgtgtatatatatcacattttctttatccaatcaattattgatggacacataggttggacttaggttggttccatgactttgctattgtcatgatattgtcctataatgatttgttttcctttgggtaggtgtccagttatgaatatttccgggtcaaatggtagttctgttttcagttctttgagaaatcttcatactgttttccatagagcttgaactaatttatattcccaccaatagtgtataagcgttctctctt-------tgctctgcatccaagtcaacctctgttt--ttttcttttttca--------actttttaataacagccattctgactgatataagatgatatctcattg------tggttttaatgagcatttctctaatgattagtgattccgagca-ttttttcatgtgtttgttggctgcttgcatttttttttttttgaaaaatgtctgttcatgtcctttgcccagtttttaatgggcttgtttatttttttcttcttgaattctttgaggtccttgtggattcttgatattagtcctttgtcggaggcatattttgcaaTTCTG--TTTTTTTtttttcaagcttggcgagaaagattttattcaggaccagagcaatagttacagggaccactgaaatattgtctgacagtggggaagagagattCCACGCTGGTCATTTGTA i ponAbe2.chr2a C 0 C 0 s nomLeu3.chr19 76387908 1058 - 81552678 acatattccagtcatttaaaaaatatttattttattttagattcaaggtgtacatgtgaatatttattacatgggtatattgcatactggtggggattgggcttctagatcacccattatccaaataatgaatattgtacctaataggtagtttttcaacactcacatcctctcccctttggggaacctcagtgtctattatttccatctttatgcccatgtgtaccaattgtttagcttccacttgtagttgaggacatgcaatattttattt--tgtttctgagttaattcacttagaataatggtctccacctccatccatgttgcttcaaaggacatgatttcattctt-tttatggtggtgtagtattacacggtgtgtatatatatcacattttctttatctaatcaattattgatggacacataggttggacttaagttggttccatgactttgctattgtcatggtattgtcctataatgatttgttttcctttgggtaggtgtccagttatgaatatttccaggtcaaatggtagttctgttttcagttctttgagaaatcttcatactgttctccatagagcttgaactaatttatattcccaccaatagtgtataagcattctctctt-------tgcgctgcatccaagtcaacttctgttt--ttttcttttttca--------actttttaataacagccattctggctgatataagatgatatctcattg------tggttttaatgagcatttctctaatgattagtgattctgagcatttttttcatgtgtttgttggctgcttgca-tttttttttcttgaaaaatgtctgttcatgtcctttgcccagtttttaatgggattgtttatttttttcttcttgaattctttgaggtccttgtagattattgatattagtcctttgtcagaggcatattttgcaaTTCTG-TTTTTTTTtttttcaagcatggcaagaaagattttattcaggaccagagcaatagttacagggaccactgaaatgttgtctgacagtggggaagagagattCCATGCTGGTCATTTTTA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr13 133306820 1061 - 137160470 acacattccagtCATTTAAAAAATAtttattttgttttagatccaagg-gtacatgtgaatgttcgttacatgggtatattgcatactggtgaggactgggcttctggttcacccattacccaaataatgaatatggtacctaataggtagtttttcaaccctcacatcctctcccctttgggaaacctcagtgtctattatttccatttttatgcacatgggtaccaattatttatctcccacttgtaggtgagaacttgcagtattttattttctgtttctgagttaattcacttagaataatggtctccacctccatccatattgcctcaatgaacatgatttcattcttttttatagtggtgtagtattacatggtgtgtatacatatcacattttctttatccaatcaattattgatggacacataggttggacttaggttggttccatgactttgctattgtcgtgatattatcatataatgatttgttttcctttgggtaggtgtccagttatgaatatttctggg-caaatggtagttctgttttcagttctttgagaaatcgtcatactgttttccatagaggttgaactaatttatgttcccgccaaaagtctataagcgttctctctgctctgcacactctgcatccaagtcaacatctatttgtttttttttttttt----ttcctttttttaaacccagccattctgactgatataagatgatatctcattg------tggttttaatgggcatttctctaatgattagtgattctgagca-ttttttcatgtgttcattggctgcttgaa---ttttttttt----aaatgtctgttcatgtcctttgccgagtttttaatggggttgtttgttttcttcttcttgaattatttgaggtccttgtagattcttgatattagtcctttgttggaggcatattttgcaattc-----tttttttttttcaagcatggtgagaaatattttattcaggatcagagcggtagttacagcgaccactgaaatgttgtctgacagtggggaagagagattCCATGCTGGTCATTTTTA i rheMac3.chr13 C 0 C 0 s macFas5.chr13 105386888 1057 + 111193037 acacattccagtcatttaaaaaatatttattttgttttagatccaagg-gtacatgtgaatgttcgttacatgggtatattgcatactggtgaggactgggcttctggttcacccattacccaaataatgaatatggtacctaataggtagtttttcaaccctcacatcctctcccctttgggaaacctcagtgtctattatttccatttttatgcacatgggtaccaattatttatctcccacttgtaggtgagaacttgcagtattttattttctgtttctgagttaattcacttagaataatggtctccacctccatccatattgcctcaatgaacatgatttcattcttttttatagtggtgtagtattacatggtgtgtatacatatcacattttctttatccaatcaattattgatggacacataggttggacttaggttggttccgtgactttgctattgtcgtgatattatcatataatgatttgttttcctttgggtaggtgtccagttacgaatatttctggg-caaatggtagttctgttttcagttctttgagaaatcgtcatactgttttccatagaggttgaactaatttatgttcccgccaaaagtctataagcgttctctctgctctgcacactctgcatccaagtcaacatctatttggttttttttttttg--------actttttaataacagccattctgactgatataagatgatatctcattg------tggttttaatgggcatttctctaatgattagtgattctgagca-ttttttcatgtgttcattggctgcttgaa---ttttttttt----aaatgtctgttcatgtcctttgccgagtttttaatggggttgtttgttttcttcttcttgacttatttgaggtccttgtagattcttgatattagtcctttgttggaggcatattttgcaattc-----tttttttttttcaagcatggtgagaaatattttattcaggatcagagcagtagttacagcgaccactgaaatgttgtctgacagtggggaagagagattCCATGCTGGTCATTTTTA i macFas5.chr13 C 0 C 0 s papAnu2.chr13 123095680 1060 - 128036923 acacattccagtcatttaaaatatatttattttgttttagatccAAGG-GTACATGTGAATGTtcgttacatgggtatattgcatactGGTGAGGACTGGGCTTCTGGTTCACCCATTACCCAAATAATGAATATggtacctaataggtagtttttcaaccctcacatCCTCTCCCCTTTGGGAAACCTCAGTgtccattatttccatttttatgcaCATGGGTACCAATTATTTATCTCCCACTTGTAGGTGAGAActtgcagtattttattttctgtttctgagttaattcacttagaataatggtctccacctccatccatgttgccttaatgaacatgatttcattcttttttatagtggtgtagtattacatggtgtgtatacatatcacattttctttatccaatcaattattgatggacacataggttggacttaggttggttccatgactttgctatttttGTGGTATTATCAtataatgatttgttttcctttgggtaggtGTCCAGTTATGAATATTTCTGgg-caaatggtagttctgttttcagttctttgagaaatcgtcatactgttttccatagaggttgaacTAATGTATGTTCCCGCCAAAAGTCTACAAGCGTTCTCTCTGCTCTGCACACTCTGCATCCAAgtcaacatctat----ttttttttttttg--------actttttaataacagccattctgactgatataagatgatatctcattgtggttttggttttaatgggcatttctctaatgattagtgattctgagca-ttttttcatgtgttcattggctgcttgaa---ttttttttt----aaatgtctgttcatgtcctttgccgagtttttaatggggttgtttgttttcttcttcttgaatTATTTGAGGtccttgtagattcttgatattagtcctttgttggaggcatattttgcaattc----ttttttttttttcaagcatggtgagaaatattttattcaggatCAGAGCAGTAGTTACAGCGACCACTGAAATGTTGTCTGACAGTGGGGAAGAGAGATTCCATGCTGGTCATTTTTA i papAnu2.chr13 C 0 C 0 s chlSab2.chr14 102036131 1061 + 107702431 ACACATTCCAGTCATTTAAAAAATATTTAttttattttagattcaagg-gtacatgtgaatgtttgttacatgggtatcttgcttactggtgaggactgggcttctggttcacccattacccaaataatgaatatggtacctaataggtagtttttcaaccctcacatcctctcccctttggggaacctcagtgtctattatttccatttttatgcccatgggtagcaattatttatcttccacttgtaggtgagaacttgcagtattttattttctgtttctgagttaattcacttagaataatggtctccacctccatccatgttgcttcaatgaacatgatttcattcttttttatagtggtgtagtattacatggtgtgtatacatatcatattttctttatccaatcaattattgatggacacataggttggacttaggttggttccatgactttgctattgtcatggtattgtcatataatgatttgttttcctttgggtaggtgtccagttatgaatatttctggg-caaatggtagttctgttttcagttctttgagaaatcttcatactgttttccatagaggttgaactaatttgcgttcccgccaaaagtgtataagtgttctccctgctctgcacactctgcatccaagtcaacatctgtttgtttttttgtttttttgtttttgactttttaataacagccattctgactgatataagatgatatctcattg------tggttttaatgggcatttctctaatgattagtgattctgagaa-ttttttcatgtgttcattggctgcttgca---tttttttaa----aaatgtctgttcatgtcctttgccgagtttttaatgggg----ttgttttcttcttcttgaattatttgaggtccttgtagattcttgatattagtcctttgtcagaggcatattttgcaattc-----tttttttttttcaagcatggtgagaaatattttattcaggatcagagcaatagttatagcgatcactgaaatgttgtctgacagtggggaatagagattCCATGCTGGTCATTTTTA i chlSab2.chr14 C 0 C 0 e calJac3.chr14 5652759 605 - 108792865 I e canFam3.chr17 60742297 0 - 64289059 C a score=167034.000000 s hg38.chr1_KI270765v1_alt 8168 345 + 185285 ACAGCTTTCTTttattattattgttattattattattattatactttaagttctagggtacatgtgcacaacgtgcagatttgttacatatgtatacatgtgccatgttgtcgtgctgcacccattaacttgtcatttacattaggtatatctcctaatggtatccctcccccctccccctacccaacgacagctcctggtgtgtgatgttcccctttctgtgtccaagtgttctcattgttcagtacccacctatgagtaagaacatgccgtgtttggttttctgtccttgcgatagtttgctgagaatgatggtttccagcttcatctatgtccctacaaagg s panTro4.chr1_AACZ03149435_random 113444 338 + 173505 ACAGCTTTCTTttattattattg---ttattattattattatactttaagttctagggtacatgtgcacaacgtgcagatttgttacatatgtatacatgtgccatgttgtcgtgctgcacccattaacttgtcatttacattaggtatatctcctaatggtatccctccccactccccctacccaacgacagctcctggtgtgtgatgttcccctttctgtgtccaagtgttctcattgttcagtacccacctatgagtgagaacatgccgtgtttggttttctgtccttgcgatagtttgctga----gatggtttccagcttcatctatgtccctacaaagg i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chr2a 107057601 333 + 113028656 ATAGCTTTCTTTTA------------TTATTAttattattatactttaagttccagagtacatgtgcacaacgtgcaggttcgttacatatgtatacatgtgccatgttgtcgtgctgcacccattaactcgtcatttacagtaggtatatctcctaatggtatcccttccccctccccctaccccgtgacaggccccggtgtgtgatgttcccctttctgtgtccaagtgttctcactgttcagttcccacctatgagtgagaacacgtggtgtttggttttctgtccttgcgatagtttgctgagaatgatggtttccagcttcatctatgtccctacaaagg i ponAbe2.chr2a C 0 C 0 s nomLeu3.chr19 76388966 330 - 81552678 ACAGCTTTCtt---------------ttattattattattatactttaagttttagggtacatgtgcacaacttgcaggtttgttacgtatgtatacatgtgccatgttgtcatgctgcacccattaactcgtcgtttacattaggtatatctcttattggtatcccttccccctccccctaccccacaacaggccccgatgtgtgatgttcccctttctgtgttcaagtgttctcattgttcagttcccacctatgagtgagaacatgcggtgtttggttttctgtccttgcgatagtttgctgagaatgatggtttccagcttcatctatgcccctacaaagg i nomLeu3.chr19 C 0 C 0 e calJac3.chr14 5652759 605 - 108792865 I e chlSab2.chr14 102037192 0 + 107702431 C e rheMac3.chr13 133307881 0 - 137160470 C e canFam3.chr17 60742297 0 - 64289059 C e papAnu2.chr13 123096740 0 - 128036923 C e macFas5.chr13 105387945 0 + 111193037 C a score=19886.000000 s hg38.chr1_KI270765v1_alt 8513 33 + 185285 acatgaactcatccttttttatggctgcataTT s panTro4.chr1_AACZ03149435_random 113782 33 + 173505 acatgaactcatccttttttatggctgcataTT i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chr2a 107057934 33 + 113028656 acatgaactcatccttttttatggctgcataTT i ponAbe2.chr2a C 0 C 0 s nomLeu3.chr19 76389296 33 - 81552678 acattaactcatccttttttatggctgcataTT i nomLeu3.chr19 C 0 C 0 s canFam3.chr17 60742297 27 - 64289059 ACACACACTCTTCCTTTTTT-----CACACAT- i canFam3.chr17 C 0 C 0 e calJac3.chr14 5652759 605 - 108792865 I e chlSab2.chr14 102037192 0 + 107702431 C e rheMac3.chr13 133307881 0 - 137160470 C e papAnu2.chr13 123096740 0 - 128036923 C e macFas5.chr13 105387945 0 + 111193037 C a score=1097.000000 s hg38.chr1_KI270765v1_alt 8546 2 + 185285 TG s panTro4.chr1_AACZ03149435_random 113815 2 + 173505 TG i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chr2a 107057967 2 + 113028656 TA i ponAbe2.chr2a C 0 C 0 s nomLeu3.chr19 76389329 2 - 81552678 TA i nomLeu3.chr19 C 0 C 0 s calJac3.chr14 5653364 2 - 108792865 TA i calJac3.chr14 I 605 C 0 e chlSab2.chr14 102037192 0 + 107702431 C e rheMac3.chr13 133307881 0 - 137160470 C e canFam3.chr17 60742324 0 - 64289059 C e papAnu2.chr13 123096740 0 - 128036923 C e macFas5.chr13 105387945 0 + 111193037 C a score=1053477.000000 s hg38.chr1_KI270765v1_alt 8548 392 + 185285 ACAGCTTTCTTTTGCTGAGATTGTTTCAAGTGTGTTCTAGCTTTGGACGTTATGAGAAGAGCTGTTTTACAA-CATTTTTCTCTGATTATTTTTAAATCTAGGGTCTTTGTAGAACTGTTTCTTTCTCCACTATTTCTTCTAGTTCTCTGTAATGGTtatatg--------------------------tatatatatatatgatacatatgtacttatctatcagcta------tatacatcatataggtgatacat-acataCGCTGTGAGTGCATTATTTTCCTTGGAATATTATTGTGGAGATTCTTTCAGGATGAGGAGGAACTG--------------------------------------CACATTTGTTTCTATTAGGTATTGTGAACT-----GTTTTAAACTAAATTTATAGCTTGAGTTTTTGAGATTGT-AATTTATGCAACAGCAGCATTTTCCCC s panTro4.chr1_AACZ03149435_random 113817 419 + 173505 ACAGCTTTCTTTTGCTGAGATTGTTTCAAGTGTGTTCTAGCTTTGGGCGTTATGAGAAGAGTTGTTTTACAA-CATTTTTCTCTGATTATTTTTAAATCTAGGGTCTTTGTAGAACTGTTTCTTTCTCCACTATTTCTTCTAGTTCTCTGTAATGGTtatatgtgtatatatatatatatatatatatatatatatatatatgatacatatgtaCTTATCTATCAGCTA------TATACATCATATAGGTGATACATAACATACGCTGTGAGTGCATTATTTTCCTTGGAATATTATTGTGGAGATTCTTTCAGGATAAGGAGGAACTG--------------------------------------CACATTTGTTTCTATTAGGTATTGTGAACT-----GTTTTAAACTAAATTTATAGCTTGAGTTTTTGAGATTGT-AATTTATGCAACAGCAGCATTTTCCCC i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chr2a 107057969 392 + 113028656 ACAGCTTTCTTTTGCTGAGATTGTTTCAAGTTTGTTCTAGCTTTGTACACTATGAGAAGAGTTGTTTTACAA-AATTTTTCTCTGATTATTTTTAAATCTAGGGTCTTTGTAGAACTGTTTCTTTCTCCACTATTTCTTCTAGTTCTCTGTAATGGTtacata--------------------------tatatatatatctgatacatatgtacatatatatCAGCTA------TATACATCATATAGGTGATACAT-ACATATACTGTGAGTGGATTATTTTCCTTGGAATATTACTGTGGAAATTCTTTCAGGATGAGGAGGAACTG--------------------------------------CACATTTGTTTCTATCAGGTATTGTGAATT-----GTTTTAAACTAAATTTATAGCTTGAGTTTTTGAGATTGT-AATTTATGCAACAGCAACATTTTCCCC i ponAbe2.chr2a C 0 C 0 s nomLeu3.chr19 76389331 394 - 81552678 ACAGCTTTCTTTTGCTGAGATTGTTTCAAGTTTGTTCTAGCTTTGTACATTATGAGAAGAGTTGTTTTACAA-AATTTTTCTCTAATTATTTTTAAATCTAGGGTATTTGTAGAACTGTTTCTTTCTTCACTATTTCTTCTAGTTCTCTGTAATGGTTTtata------------------------tatatatatatatatgatacatatgtacatatatatcagcta------tatacatcatataggtgatacat-acatataCTGTGAGTGCATTATTTTCCTTGGAATATTATTGTGGAAATTCTTTCAGGATGAGGAGGAACTG--------------------------------------CACGTTTGTTTCCATCAGGTATTGTAAACT-----GTTTTAAACTAAATTTATAGCTTGAGTTTTTGAGATTGT-AATTTATGCAACAGCAGCATTTTCCCC i nomLeu3.chr19 C 0 C 0 s rheMac3.chr13 133307881 373 - 137160470 ACAGCTTTCTTTTGCTGAGATTGTTTCAAGTTTACTCTAGCTGTGTATATTATGAGAAGAGTTGTTTTACAA-AATTTTTCTCTGATTATTTTTAAATCTAGGCTCATTGTAGAACTCTTTCTTTCTCCACTATTTCTTCTAGTTCTCTGTAATGGTGAGATA-----------------------------------------------TATACATAAGTATCAGCTATATACGTATA---CATATAGGTGATACAT-ACATATAATGTGACTGCATTATTTTCTTTGGAATATTATTGTGAGAATTCTTTCAGGATGAGGAAGAACTG--------------------------------------CACATTTGTTTCTATCA-GTATTGTGAACT-----GTTTTCAACTAAATTTATAACTTGAGCTTTTGAGATTGT-AATTTATAAAACAGCAGCATTTTCCCC i rheMac3.chr13 C 0 C 0 s macFas5.chr13 105387945 373 + 111193037 ACAGCTTTCTTTTGCTGAGATTGTTTCAAGTTTACTCTAGCTGTGTATATTATGAGAAGAGTTGTTTTACAA-AATTTTTCTCTGATTATTTTTAAATCTAGGCTCATTGTAGAACTCTTTCTTTCTCCACTATTTCTTCTAGTTCTCTGTAATGGTGAGATa-----------------------------------------------tatacataagtatcagctatatacgtata---catataggtgatacat-acatataATGTGACTGCATTATTTTCTTTGGAATATTATTGTGAGAATTCTTTCAGGATGAGGAAGAACTG--------------------------------------CACATTCGTTTCCATCA-GTATTGTGAACT-----GTTTTCAACTAAATTTATAACTTGAGCTTTTGAGATTGT-AATTTATAAAACAGCAGCATTTTCCCC i macFas5.chr13 C 0 C 0 s papAnu2.chr13 123096740 366 - 128036923 ACAGCTTTCTTTTGCTGAGATTGTTTCAAGTTTACTCTAGCTGTGTATATTATGAGAAGAgttgttttacaa-aatttttctctgattatttttaaatctaggcTCATTGTAGAACTCTTTCTTTCTCCACTATTTCTTCTAGTTCTCTGTAATGGTGAGata-----------------------------------------------tatacataagtatcagcta------tata---catataggtgatacat-acatataatgtGACTGCATTATTTTCTTTGGAATATTATTGTGAGAATTCTTTCAGGATGAGGAAGAACTG--------------------------------------CACATTTGTTTCTATCA-GTATTGTGAACT-----GTTTTCAACTAAATTTATAACTTGAGC-TTTGAGATTGT-AATTTATAAAACAGCAGCATTTTCCCC i papAnu2.chr13 C 0 C 0 s chlSab2.chr14 102037192 367 + 107702431 ACAGCTTTCTTTTGCTAAGATTGTTTCAAGTTTACTCTAGCTGTGTATATTATGAGAAGAGTTGTTTGACAA-AATTTTTCTCTGATTATTTTTAAATCTAGGCTCATTGTAGAACTCTTTCTTTCTCCACTATTTCTTCTAGTTCTCTGTAATGGTGAGATA-----------------------------------------------TATACTTAAGTATCAGCTA------TATA---CACATAGGTGACACAT-ACATATAATGTGACTGCATTATTTTCTTTGGAATATTATTGTGAGAATTCTTTCAGGATGAGGAAGAACTG--------------------------------------CACATTTGTTTCTATCA-GTATTGTGAACT-----GTTTTCAACTAAATTTATACCTTGAGCTTTTGAGATTGT-AATTTATAAAACAGCAGCATTTTCCCC i chlSab2.chr14 C 0 C 0 s calJac3.chr14 5653366 338 - 108792865 ACAGCTTTCTTTTGCTGAGATTGTTTCAAGTTTGCTATAGCTTTGTACATTATAAGAACAGTTGTTTTAAAAGAAGTTTTCTCTGATTATTTTTAAATATAGGGTCTTTGGAAAACACTTTCTTTCTCTGCTATTTTTTCCAGTTCTCTGTAATG-----ATG----------------------------------------------------------ATTATCTC------TCTA------------------T-CTATCTACTGTGAGTGCATTATTTTCTTTGGAATATTACTGTGGGAATTCTTCCAGGATGAGGAGGAACTA--------------------------------------CACATTTGTTTCTATCAGGCATTGTGAACT-----GTTTTAAACTAATTTTATAGCTTGAGTTTTTGAGATTGT-AATTTATACAAGAGCAGCATTTTCCCC i calJac3.chr14 C 0 C 0 s canFam3.chr17 60742324 377 - 64289059 ---GCTCTCTC---CCGACGTATTTCCAAGCCTGTTACAATCGTG--CGCTGTGAGACGGGTTGTTTTACAA-ACCTTTTC-CTGATTACTCTTACATCTGGAGCCTTCGTGGAAC-----CGTTCTCTGTTGTTTCTGCTGGCATTCTTTAATGATGCTTTC----------------------------------------------------------------TT------TCTC---AATTTGGCCGAT---T-GTTTTTACCGCGAATG-GTTATTTTCCTTGGAATAGTGTTGCGAGAATTCTTTCAGAAATAGGAGGAGCTGGGAtttttttttttcttttttcttttcttttctttttttttttttttttttttCAGGCACTATGGACTCGATCGTCTGAAACTGAATTTGTGGCTTGAGTGTTTCAGGTTGTGAGTTTATGCAAGAGCCGCGTTTCCTGC i canFam3.chr17 C 0 C 0 a score=897321.000000 s hg38.chr1_KI270765v1_alt 8940 336 + 185285 ATGCTTTGTTTAGCACCAACGAACACTTCCTTGCCGACACATGGAAGCAGGAGTGAGGTAGTGTGGGTTTACTTTTGGTTTATGCTTATTGTGAAATTATAGCTCTTTGGAGGTCTTGTTTCATA-GGGGGAAAGTCTTCTATTATCACATGCGTGTTGCTGGGGACTTGAGATTTTT---TCCTTCTTCCATATCACTCCACAGAGACTGAAAAACTGAAGCTCAAATTCACTGCTTTCATGAATTCTCCAAGGGCCAAAGGGAATTCAACATTTAGCTTTCTTTTCTGAGATCAAGACATCACTTAgattttggtcttgtaattccttaccatcttgt s panTro4.chr1_AACZ03149435_random 114236 336 + 173505 ATGCTTTGTTCAGCACCAACGAACACTTCCTTGCCGACACATGGAAGCAGGAGTGAGGTAGTGTGGGTTTACTTTTGGTTTATGCTTATTGTGAAATTATAGCTCTTTGGAGGTCTTGTTTCATA-GGGGGAAAGTCTTCTATTATCACATGCGTGTTGCTGGGGACTTGAGATTTTT---TCCTTCTTCCATATCACTCCACAGAGACTGAAAAACTGAAGCTCAAATTCACTGCTTTCATGAATTCTCCAAGGGCCAAAGGGAATTCAACATTTAGCTTTCTTTTCTGAGATCAAGACATCACTTAGATTTTGGTCTTGTAATTCCTTACCATCTTGT i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chr2a 107058361 334 + 113028656 ATGCTTTGTTCAGCACCAACGAACACTTCCTTGCAGACACATGGAAGCAGGAGTGGGGTAGTGTGGGTTTACTTTTGGTTTATGCTTATTATGAAATTATGGCCCTTTGGAGGTCTTGTTTCATA-GGAGGAAAGTCTTCTATTATCATATACGTGTTGCTGGGGACTTGAGA--TTT---TCCTTCTTCCATGTCACTCCACAGAGCCTGAAAAACTGAAGCTCAAATTCACTGCTTTCATGaattctccaagggccaaagggaattcaacgtttagcttacttttctgggatcaagacatcacttagattttggtcttgtaattccttaccatcttgt i ponAbe2.chr2a C 0 C 0 s nomLeu3.chr19 76389725 334 - 81552678 ATGCTTTGTTCAGCACGAACGAACACTTCCTTGCAGACACATGGAAGCAGGAGTGGGGTAGTGTGGGTTTACTTTTGGTTTCTTCTTATTGTGAAATTATAGCTCTTTAGAAGTCTTGTTTCATA-AGGGGAAAGTCTTCTATTATCACATACATGTTGCTGGGGACTTGAGA--TTT---TCCTTCTTCCATATCACTCCACAGAGCCTGAAAAACTGAAGCTCAAATTCACTGCTTTCATGaattctccaagggccaaagggaattcaacatttagcttacttttctgggatcaagacatcacttagattttggtcttgtaattccttaccatcttgt i nomLeu3.chr19 C 0 C 0 s rheMac3.chr13 133308254 334 - 137160470 ATGCTTCGTTCAGCACCAGTGAACACTTCCTTGTTGACACATGGAAACAGGAGTGGggtagtgtgggtttacttttggtttatgcttattgtgaaattatagctctttggaggtcttattttata-gggggaaagtcttctattataacattcatgttggtggggacttgaga--ttt---tccttcttccatatcactccatagagcctaaaaaactgaagctcaaattcactgctttcatgtactctccaaggtccaaagggaattcaacatttagcttacttttctgggatcaagacatcacttagattttggtcttataattccttaccatcttgt i rheMac3.chr13 C 0 C 0 s macFas5.chr13 105388318 334 + 111193037 ATGCTTTGTTCAGCACCAGTGAACACTTCCTTGTTGACACATGGAAACAGGAGTGGGGTAGTGTGGGTTTACTTTTGGTTTATGCTTATTGTGAAATTATAGCTCTTTGGAGGTCTTATTTTATA-GGGGGAAAGTCTTCTATTATAACATTCATGTTGGTGGGGACTTGAGA--TTT---TCCTTCTTCCATATCACTCCATAGAGCCTAAAAAACTGAAGCTCAAATTCACTGCTTTCATGTACTCTCCAAGGTCCAAAGGGAATTCAACATTTAGCTTACTTTTCTGGGATCAAGACATCACTTAGATTTTGGTCTTATAATTCCTTACCATCTTGT i macFas5.chr13 C 0 C 0 s papAnu2.chr13 123097106 334 - 128036923 ATGCTTTGTTCAGCACCAGTGAACACTTTCTTGTTGACACATGGAAACAGGAGTGGGGTAGTGTGGGTTTACTTTTGGTTTATGCTTATTGTGAAATTATAGCTCTTTGGAGGTCTTATTTTATA-GGGGGAAAGTCTTCTATTATAACATTCATGTTGGTGGGGACTTGAGA--TTT---TCCTTCTTCCATATCACTCCATAGAGCCtgaaaaactgaagctcaaatTCACTGTTTTCATGTACTCTCCAAGGTCCAAAGGGAATTCAACATTTAGCTtacttttctgggatcaagacatCACTTAGATTTTGGTCTTATAATTCCTTACCATCTTGT i papAnu2.chr13 C 0 C 0 s chlSab2.chr14 102037559 334 + 107702431 ATGCTTTGTTCAGCACCAGTGAACACTTCCTTGTTGATACATGGAAACAGGAGTGGGGTAGTGTGGGTTTACTTTTGGTTTATGCTTATTGTGAAATTATAGCTCTTTGGAGGTCTTATTTTATA-GGGGGAAAGTCTTCTATTATAACATTCATGTTGGTGGGGACTTGAGA--TTT---TCCTTCTTCCATATCACTCCATAGAGCCTGAAAAACTGAAGCTCAAATTCACTGCTTTCATGTACTCTCCACGGTCCAAAGGGAATTCAACATTTAGCTTACTTTTCTGGGATCAAGACATCACTTAGATTTTGGTCTTATAACTCCTTACCATCTTGT i chlSab2.chr14 C 0 C 0 s canFam3.chr17 60742701 327 - 64289059 AGGCCCTGCTGGGCCCCGTGAAA---TCTCCTGTTGACATGTGG----AGGtgtgggg-agtggggatcaacttttagtacgtccttaccctggagttacagctcccccagggttgcgtttcacagggggggaggtcttatactagtgtacacatgttggttgggtcctgagc--tttagctccttcttc--tgttacttcacaaaaccttaaaaagtgcagttcacattctcagccttgacaaattctctaaggg-caaaggagccttagcattctgcttgctttgttaggatcctgatttcacttagattttggtctggaaatcccttactatgttgt i canFam3.chr17 C 0 C 0 e calJac3.chr14 5653704 0 - 108792865 C a score=4792252.000000 s hg38.chr1_KI270765v1_alt 9276 1558 + 185285 atgctctt--tgttgctccaaaat-------cttctttttcttctatcttatgcagaatttct-agttgtttttatcaagaatgtgggtttgaacaaCTGAGCATATTATTTTATTGGAAAAGTGCAATTGCTT-TTTACTACCGATTCCTAATTATCCAGAGGATCTAGAA-AAAATGGATTTAACTCTTTGGCCAATTAAAACACAA----ATTCCAAAAATGGATTATCTGTTCTT--ATAAAGCTATAGTATATT-AAAAGATATTTAATACATAAAT---AA-----------------CAGTAAACAAAGTATCCTCTACTATGGTTTG-AA------AATTATTTAGAATCTTGCGATTTTCCTGGGTCTCTCTAAATGCTAATGATCACCAATGAGTTTGACAAATAGAGATGTTACAAGTGATTGGTTTAAATCTTTGATGCACCTTAAATGTATTTTAAAATGTGCCCCTAACTCTTTATTTTACCTGACTGTATTT-CAGTGCATCAGTTTAAGGgaagacatgagatcatgggtttaagt-gaggcttcatcatactaagacaacgtgatcaggtaagtacttg-cccctctacatgtcagcattcttacctgtaacatagtacaaacaagactttgtctgagtcccttgcaacattttgtggagcatcaaatacaataaagaccgtggatatgctttgtaaaccttgagtttctacacatatgcaaA-----TATAAGTTCTGGTAAGATATAGAATGAACAAGGGAAATAGAATCCTATTTTTATGTTTCAATTTTATGGATTGCTGGAAAATTGAAGTGTATAGGAGTCTTCCTGT-GTTGCTCACTAGAATGCCTTTGGCTGGGTTTACTGGTA--TTGCACGAAAACAGCTGTTAGCAAAGACAAGACTTAGGCACCCAACAAGACCTTTTATTTTCACATGACTGAGCCTCTGACTTCAATATCCTTTCCGTGTTTTTCCCAGAAGTTCTTTTGTGTTATG-TACAATTACTCTGCTGAACAGAttgtatttg-----ttttt--------------ttctttg-ttgttttgtttgt------------------ttgttttgttttgttt--tgttttACTGTGAGGCAGTGATGCCAATGCTTGTGTATTTAGGATGGGGGTCGCAGACTCTGTACTTCCAGGAGAAGCCCCC-GGAAGGTCTTAGCTGGCTCCTGAGGGGGCACATTTGCTGTGCTCATTGCA-----CTTTACCTGgtgtcatgaagcataaagagcacaaacgtggacaccaa-gagtctaccttaaagtcccactcctttatgtttgtaaatatgggatattggg-aagttgctgcaccttttt-ttgctcattttcttcactgaacagcagaaatagaaaa-atttcttcttaatagggcttaagggagactcaaatacaacactgtatatgatgttcttttgcaaattgtaaagcaaagtacaaaGTTTCAAATATATTCATTATACGTATATATCT------------AGCTTTTT----ATTCCATTTGGTTCAAAAA---ATTTATGTGTTCCAA------AAAATTATGGAGGTG---------------------------ATACATATCTAAGT-------AGAGGATTTGTCAAATATAA-----ATATCATGATGTACTAACAAGGCTGGACAGC s panTro4.chr1_AACZ03149435_random 114572 1562 + 173505 ATGCTCTT--TGTTGCTCCAAAAT-------CTTCTTTTCCTTCTATCTTATGCAGAATTTCT-AGTTGTTTTTATCAAGAATATGGGTTTGAACAACTGAGCATATTATTTTATTGGAAAAGTGCAATTGCTT-TTTACTACCGATTCCTAATTATCCAGAGGATCTAGAA-AAAATGGACTTAACTCTTTGGCCAATTAAAACACAAATTTATTCCAAAAATGGATTATCTGTTCTT--ATAAAGCTATAGTATATT-AAAAGATATTTAATACATAAAT---AA-----------------CAGTAAACAAAGTATCCTCTACTATGGTTTG-AA------AATTATTTAGAATCTTGGGATTGTCCTGGGTCTCTCTAAATGCTAATGATCACCAATGAGTTTGACAAATAGAGATGTTACAAGTGATTGGTTTAAATCTTTGATGCACCTTAAATGTATTTTAAAATGTGCCCC-AACTCTTTATTTTACCTGACTGTATTT-CAGTGCATCAGTTTAAGGGAAGACATGagatcatgggtttaagt-gaggcttcatcatactaagacaacgtgatcaggtaagtacttg-cccctctacatgtcagcattctcacctgtaacatagtacaaacaggactttgtctgagtcccttgcaacattttgtggagcatcaaatacaataaagaccgtggatatgctttgtaaaccttgagtttctacacatatgcaaA-----TATAAGTACTGGTAAGATATAGAATGAGCAAGGGAAATAGAATCCTATTTTTATGTTTCAATTTTATGGATTGCTGGAAAATTGAAGTGTATAGGAGTCTTCCTGT-GTTGCTCACTAGAATGCCTTTGGCTGGGTTTACTGGTA--TTGCACGAAAACAGCTGTTAGCAAAGACAAGACTTAGGCACCCAACAAGACCTTTTATTTTCACATGACTAAGCCTCTGACTTCAATATGCGTTCCGTGTTTTTCTCAGAAGTTCTTCTGTGTTATG-TACAATTACTCTGCTGAACAGATTGTAtttg-----ttttt--------------ttctttgttttttttgtttgt------------------ttgttttgttttgttt--tgttttACTGTGAGACAGTGATGCCAATGCTTGTGTATTTAGGATGGGGGTCGCAGACTCTGTACTTCCAGGAGAAGCCCCC-GGAAGGTCTTAGCTGGCTCCTGAGGGGGCACATTTGCTGTGCTCATTGCA-----CTTTACCTGgtgtcatgaagcataaagagcacaaacttggacaccaa-gagtctacattaaagtcccactcctttatgtttgtaagtatgggatattggg-aagttgctgcaccttttt-ttgctcattttcttcactgaacagcagaaatagaaaa-atttcttcttaatagggcttaagggagactcaaatacaacactgtatatgatgttcttttgcaaattgtaaagcaaagtacaaaGTTTCAAATATATTCATTATACATATATATCT------------AGCTTTTT----ATTACATTTGGTTCAAAAA---ATTTATGTGTTCCAA------AAAATTATGGAGGTG---------------------------ATACATATCTAAGT-------AGAGGATTTGTCAAATATAA-----ATATCATGATGTACTAACAAGGCTGGACAGC i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chr2a 107058695 1559 + 113028656 atgctctt--tgttgctcaaaaat-------cttctttttcttctatcttatccagaatttct-agttgtttttatcaagaatgtgagtttgaacaaCTGAGCATATTATTTTATTGGAAAAGTGCAATTGCTT-TTTACTACCAATTCCTAATTATCCAGAGGATCTAGAA-CAAGTGGATTTAACTCTCTGGCCAACTAAAACACAAATGTATTCCAAAAATTGGTTATCTGTTCTT--ATAAAGCTATAGTATATT-AAAAGATATTTAATACATAAAT---AA-----------------CGGTAAACAAAGTATCCTCTACTATGGTTTGAAA------AATTATTTAGAATCTTGTGATCATCCTGGGTCTCTCTAAATGCCAATGATCACCAATGAGTTTGACAAATAGAGATGTTACAAGTGATTGGTTTAAATCTTTGATGCACCTTAAATGTATTTTCAAATGTGCCCCTAACTCTTTATTTTACCTGACTGTATTT-CAGTGCATCAGTTTAAGGGAAAACATGagatcatgggtttaagt-gaggcttcatcatgccaagacaatgtgatcaggtaagtacttg-cccctctacatgtcagcattctcacctgtaacatagtacaaacaggactttgtctgagtccctcgcaacattttgtggagcatcaaataaaataaagactgtgaatatgctttgtaaaccttgagtttctatacatatgcaaA-----TGTAAGAACTGGTAAGACATAGAATGAACAAGGGAAATAGAATCCTATTTTTATGTTTCAATTTTATGGATTGCTGGAAAATTGAAGTGTATAGGAGTCTCCCTGTAGTTGCTCACTAGAATGCCTTTGGCTGGGTTTACTGGTA--TTGCACAAAAACAGCTGTCAGCAAAGACAAGACTTAGGCACCCAACAAGACCTTTTATTTTCACATGACTGAGCCTCTGATTTCAATATGCGTTCCGTGTTTTTCCCAGAAGTTCTTTTGTGTTATG-TACAATTACTCTGTTGAACAGATT-TATTTG-----TTTTT--------------TTCCCCTCTTTttttgtttgt------------------ttgttttgttttgttt--tgttttACTGTGAGATTGTGATGCCAATGCTTATGTATTTAGGATGGGGGTCACAGACTCTGTGCTTCCAGGAGAAGCCCCC-AGAAGGTCTTAGCTGGCTCCTGAGGGGGCACATTTGCTGTGCTCCCTGCA-----CTTTACCtggtgccacgaagcataaagagcacaaacttgga---caa-gagtctacattaaagtcccactcctttatgtttgtaaatatgggatattggg-aagttgctgcacctttttgttgctcatttgcttcactgaacaacagaaatagaaaa-atttcttcttaatagggcttaagggagactcaaatacaacactgtatatgatgttcttttgcaaattgtaaaTCAAAGTACAAAGTTTCAAATATATTCATTATATGTATATATCT------------AGCTCTTT----ATTCCATTTGGTTCAAAAA---CTTTATGTGTTCCAA------AAAATTATGGAGGTG---------------------------ATACATATCTAAGT-------A---TATTTGTCAAATATAA-----ATATCATGATGTACAAACAAGGCTGGACAGC i ponAbe2.chr2a C 0 C 0 s nomLeu3.chr19 76390059 1558 - 81552678 atgctctt--tgttgctcaaaaat-------cttctttttcttctatcttatccagaatttct-agttgtttttatcaagaatgtgagtttaaacaaCTGAGCATATTATTTTATTGGAAAAGTGCAATTGCTT-TTTACTACCAATTCCTAATGATCCAGAGGATCTAGAA-AAAATGGATTTAACTCTCTAGGCAATTAAAACACAGATTTATTCCAAAAATGGATTATCTGTTCTT--ATAAAGCTATAGTATATT-AAAAGAGATATACTACATAAAT---AA-----------------CAGTAAACAAAGTATCCTGTACTATGGTTTG-AA------AATTATCTAGAATCTTGCGATTGTCCTGGGTCTTTCTAATTGCCAATGATCACCAATGAGTTTGACAAATAGAGGTGTTGCAAGTGATTGGTTTAAATCTTTGATGCATCTTAAATGTATTTTAAAACGTGCCCCTAACTCTTTATTTTACCCGACTGTATTT-CAGTGCATCAGTTTAAGGgaagacatgagatcatgggtttaagt-gaggcttcatcatgccaagacaacatgatcaggtaagtacttg-cccctctacatgtcagcattctcacctgtaacatagtacaaaca-gactttctctgagtccctcgcaacattttgtggagcatcaaataaaataaagaccatgcatatgctttgtaaaccttgagtttctatacatatgcaaA-----TACAAGAACTGGTAAGATATAGAATGAACAAGAGAAATAGAATCCTATTTTTATGTTTCAATTTTATGGATTGCTGGAAAATTGAAGTGTATAGGAGTCTTCCTGTAGTTGCTCACTAGAATGCCTTTGGCTGGGTTTTCTGGTA--TTGCACAAAAACAGCTGTTAGCAAAGACAAGACTTAGGCACCCAAGAAGACCTTTTATTTTCACATGACTGAGCCTCTGATTTCAATATGCGTTCTGTGTTTTTCCCAGAAGTTCTTTTGTGTTATG-CACAATTACTCTGTTGAACAGAtt-tatttg-----ttttt-------------atcctcctccttttttttttg-----------------------tttgttttgttt--tgttttACTGTGAGACAGTGATGCTAATGCTTGTGTATTTAGGATGGGGGTCGCAGGCTCTGTACTTCCAGGAGAAGCCCCC-AGAAGGTCTTAGCTGGCTCCTGAGGGGGCACATTTGCTGTGCTCACTGCA-----CTTTACCTGTTGCCAtgaagcataaagagcacaaacttggacaccaa-gagtctacattaaagtcccactccttcatgtttgtaaatatgggatattggg-aagttgctgcacctttttcttgctcattttcttcactgaacaacagaaatagaaaa-atttcttcttaatagggcttaagagagactcaaatacaatactgtatatgatgttcttttgtaaattgtaaagcaaagtacaaaGTTTCAAATATATTCATTATATGTATATATCT------------AGCTCTTT----ATTCCATTTGGTTCAAAAA----TTTATGTGTTCCAA------AAAATTATGGAGGTG---------------------------ATACATATCTAAGT-------AGAGGATTTGTCAAATATAA-----ATATCACGATGTACAAACAAGGCTGGACAGC i nomLeu3.chr19 C 0 C 0 s rheMac3.chr13 133308588 1599 - 137160470 atcctctt--tgctgcttaaaaat-------cttctttttcttctgtcttatccagaatttct-agttgtttttatcaagaatgtgggtttgaacaactgagCATATTATTTTATTGGAAAAGTGCAATTGCTT-TTTACTACTAATTCCTAATTATCCACAGGATCTAGAA--AAATGGATTTAACTCTTTGGCCAGTTAAAACACAAATTTTTTCCAAAAATGGATTATCTGTTCTT--ATAAAGCTATAGTATATT-AAAAGAGATTTACGACATAAAT---AA-----------------CAGTAAACAAAGTATCCTCTACTATGGCTCG-AA------AATTATTTAGAATCTTGCAATTGTCCTGGGTCCCTCTAA-TGCCAGTGATCACCAATCAGTTTGACAAATAGAGATCTTACACGTGATTGGGTTAAATATTTGATGCATCTTAAATGCATTTTAAAATGTGCCCCTAACTCTTTACTTTACTTGACTGTATTT-CAGAGCATCAGTTTAAGGgaagacacgagatcatgggtttaagt-gaggcttcatcatgccaagacaacatgatcaggtaagtacttg-cccatctacatgtcaacattctcacctgtaacgtagtacaaacaggacttcatcagagtccctcgcaacattttgtggagcatcaaataaaataaagaccatgaatgtgctttgtaaaccttgagtttctatactgatgcaaATATATTATAAGAACTGGTAAGATATAGAATGACCAAGGGAAATAGAATCCTATTTTTATGTTTCAATTTTATGGATTGCTGGAAAATTGAAGTGTATCGGAGTCTTCCTGTAGTCGCTCACTAGAATGCCTTTGGTTGGGTTTCCTGGTA--TTGCACAAAAACAGCTGTTAGCAACAACAAGACTTAGGCGCCCAACAACACCTTTTATTTTCACATGACTGAGCCTCTGGTTTCAATATGCAGTCTGTGTTTTTCCCAGAAGTTCTTTTGTGTTATG-TAAAATTACTCTGTTGAACAGATTTTATTTG---TTTTTTTTTTGCCCCCGtttgtttttatttatttttgtttgtttgttttttg--------tttttttgttgttttt--tttttCACTGTGAGTCAGTGATGCCAATGCTTGTGTATTTAGGATGGGGGTCTCAGGCTCTGTACTTCCAGGAGAAGCCCCCAGGAAAGTCTTAGCTGGCTCCTGAGGGGGCACATTTGCTGTGCTCACTGCA-----CTTTACCTGgtgccatgaagcataaagagcacaaacttgggcaccaa-gcatctacattaaagtcctactcctttatgttagtaaatatgggatattggg-aagttgctgcacatttttgttgcccattttcttcactgaacaacagaaacagaaaa-atttcttcttaatagggattaagagagactcaaatagaacactgtatatgatgttcttttgtaaattgtaaaacaaagtacaaaGTTTCAAATATATTTATTATATGTATATATCT------------AGCTCTTTATCTATTCCATTTTGTTCAAAAA---ATTTATGTGTTCCAA------AAAATTATGGAGGTG---------------------------ATACACGTGTAAGT-------AGAGGATTTGTCAAATATAA-----ATATCATGGTGTACAAATAAGGCTAAGCAGC i rheMac3.chr13 C 0 C 0 s macFas5.chr13 105388652 1602 + 111193037 ATCCTCTT--TGTTGCTTAAAAAT-------CTTCTTTTTCTTCTGTCTTATCCAGAATTTCT-AGTTGTTTTTATCAAGAATGTGGGTTTGAACAACTGAGCATATTATTTTATTGGAAAAGTGCAATTGCTT-TTTACTACTAATTCCTAATTATCCACAGGATCTAGAA--AAATGGATTTAACTCTTTGGCCAGTTAAAACACAAATTTTTTCCAAAAATGGATTATCTGTTCTT--ATAAAGCTATAGTATATT-AAAAGAGATTTACGACATAAAT---AA-----------------CAGTAAACAAAGTATCCTCTACTATGGCTCG-AA------AATTATTTAGAATCTTGCAATTGTCCTGGGTCCCTCTAA-TGCCAGTGATCACCAATCAGTTTGACAAATAGAGATCTTACACGTGATTGGGTTAAATATTTGATGCATCTTAAATGCATTTTAAAATGTGCCCCTAACTCTTTACTTTACTTGACTGTATTT-CAGAGCATCAGTTTAAGGgaagacacgagatcatgggtttaagt-gaggcttcatcatgccaagacaacatgatcaggtaagtacttg-cccatctacatgtcaacattctcacctgtaacgtagtacaaacaggacttcatcagagtccctcgcaacattttgtggagcatcaaataaaataaagaccatgaatgtgctttgtaaaccttgagtttctatactggtgcaaATATATTATAAGAACTGGTAAGATATAGAATGACCAAGGGAAATAGAATCCTATTTTTATGTTTCAATTTTATGGATTGCTGGAAAATTGAAGTGTATCGGAGTCTTCCTGTAGTCGCTCACTAGAATGCCTTTGGTTGGGTTTACTGGTA--TTGCACAAAAACAGCTGTTAGCAACAACAAGGCTTAGGCGCCCAACAACACCTTTTATTTTCACATGACTGAGCCTCTGGTTTCAATATGCAGTCTGTGTTTTTCCCAGAAGTTCTTTTGTGTTATG-TAAAATTACTCTGTTGAACAGAttttatttgtttttttttttttgcccccgtttgtttttatttatttttgtttgtttgttttttg--------tttttttgttgttttt--tttttCACTGTGAGTCAGTGATGCCAATGCTTGTGTATTTAGGATGGGGGTCTCAGGCTCTGTACTTCCAGGAGAAGCCCCCAGGAAAGTCTTAGCTGGCTCCTGAGGGGGCACATTTGCTGTGCTCACTGCA-----CTTTACCTGgtgccatgaagcataaagagcacaaacttgggcaccaa-gcatctacattaaagtcctactcctttatgttagtaactatgggatattggg-aagttgctgcacatttttgttgcccattttcttcactgaacaacagaaacagaaaa-atttcttcttaatagggattaagagagactcaaatagaacactgtatatgatgttcttttgtaaattgtaaaacaaagtacaaaGTTTCAAatatatttattatatgtatatatct------------agctctttatctatTCCATTTTGTTCAAAAA---ATTTATGTGTTCCAA------AAAATTATGGAGGTG---------------------------ATACACATGTAAGT-------AGAGGATTTGTCAAATATAA-----ATATCATGGTGTACAAATAAGGCTAAGCAGC i macFas5.chr13 C 0 C 0 s papAnu2.chr13 123097440 1596 - 128036923 ATCCTCTT--TGTTGCttaaaaat-------cttctttttcttctgtcttatccagaatttct-ggttgtttttatcAAGAATGTGGGTTTGAACAACTGAGCATATTATTTTATTGGAAAAGTGCAATTGCTT-TTTACTACTAATTCCTAATTATCCACAGGATCTAGAA--AAATGGATTTAACTCTTTGGCCagttaaaacacaaattttttccaaaaatggaTTATCTGTTCTT--ATAAAGCTATAGTATATT-AAAAGAGATTTACTACATAAAT---AA-----------------CAGTAAACAAAGTATCCTCTACTATGGCTCG-AA------AATTATTTAGAATCTTGCAATTGTCCTGGGTCCCTCTAA-TGCCAATGATCACCAATGAGTTTGACAAATAGAGATCTTACACGTGATTGGGTTAAATAGTTGATGCatcttaaatgcattttaaaatgtgcccCTAACTCTTTAC-TTACTTGACTGTATTT-CAGAGCATCAGTTTAAGGGAAGACACGAGATCATGGGTTTAAGT-GAGGCTTCATCATGCCAAGACAACATGATCAGGTAAGTACTTG-CTCCTCTACATGTTAACATTCTCACCTGTAACGTAGTACAAACAGGACTTCATCAGAGTCCCTCGCAACATTTTGTGGAGcatcaaataaaatagagaccATGAATGTGATTTGTAAACCTTGAGTTTCTATACTGATGCAAATATATTATAAGAACTGGTAAGATATAGAATGACCAAGGGAAATAGAGTCCtatttttatgtttcaatttTATGGATTGCTGGAAAATTGAAGTGTATCGGAGTCTTCCTGTAGTCGCTCACTAGAATGCCTTTGGTTGGGTTTACTGGTA--TTGCACAAAAACAGCTGTTAGCAACAACAAGACTTAGGCGCCCAACAACACCTTTTATTTTCACATGACTGAGCCTCTGATTTCAATATGCAGTCTGTGTTTTTCCCGGAAGTTCTTTTGTGTTATG-TAAAATTATTCTGTTGAacagattttatttg-----ttttttttgcccccgtttgtttttatttatttttgtttgtttgtttcttg--------tttttttgttgttttt--tttttcactgtgagTCAGTGATGCCAATGCTTGTGTATTTAGGATGGGGGTCTCAGGCTCTGTACTTCCAGGAGAAGCCCCCAGGAAAGTCTTAGCTGGCTCCTGAGGGGGCACATTTGCCGTGCTCACTGCA-----CTTTACCTGGTGCCATGAAGCATAAAGAGCACAAACTTGGGCACCAA-GCATCTACATTAAAGTCCTACTCCTTTATGTTAGTAAATATGGGATATTGGG-AAGTTGCTGCATATTTTTGTTGCCCATTTTCTTCACTGaacaacagaaacagaaaa-atttctTCTTAATAGGGATTAAGAGAGACTCAAATAGAACACTGTGTATGatgttcttttgtaaattgtaaaaCAAAGTACaaagtttcaaatatatttattatatgtatatatct------------agcTCTTTATCGATTCCATTTTGTTCAAAAA---ATTTATGTGTTCCAA------AAAATTATGGAGGTG---------------------------ATACACATATAAGT-------AGAGGATTTGTCAAATATAA-----ATATCATGGTGTACAAATAAGGCTGAGCAGC i papAnu2.chr13 C 0 C 0 s chlSab2.chr14 102037893 1607 + 107702431 ATCCTCTT--TGTTGCTTAAAAAT-------CATCTTTTTCTTCTGTCTTATCCAGAATTTCT-GGTTGTTTTTATCAAGAATGTGGGTTTGAACAACTGAGCATGTTATTTTATTGGAAAAGTGCAATTGCTT-TATACTACCAATTCCTAATTATCCACAGGATCTAGAA--AAATGGATTTAACTCTTTGGCCAGTTAAAACACAAATTTTTTCCAAAAATGGATTATCTGTTCTT--ATAAGGCTATAGTATATT-AAAAGAGATTTACTACATAAAT---AA-----------------CAATAAACAAAGTATCCTCTACTATGGCTCG-AA------AATTATTTAGAATCTTGCAATTGTCCTGGGTCCCTCTAA-TGCCAATGATCACCAATGAGTTTGCCAAATAGAGATGTTACACGTGATTGGGTTAAATATTTGATGCACCTTAAATGCATTTTAAAATGTGCCCCTAACTCTTTACTTTACTTGACTGTATTT-CAGAGCATCAGTTTAAGGgaagacatgagatcatgggtttaagc-gaggcttcatcatgccaagacaacgtgatcaggtaagtacttg-cccctctacatgtcaacattctcacctgtaacatagtacaaacaggacttcatcagagtcccttgcaacattttgtggagcatcaaataaaataaagaccatgaatgtgctttgtaaaccttgagtttctatactgatgcaaATATATTATAAGAACTGGTAAGATATAGAATGACCAAGGGAAATAGAATCCTATTTTTATGTTTCAATTTTATGGATTGCTGAAAAATTGAAGTGTGTAGGAGTCTTCCTGTAGTCGCTCACTAGAATGCCTTTGGTTGGGTTTACTGGTA--TTGCACAAAAACAGCTGTTAGCAACAACAAGACTTAGGCGCCCAACAACACCTTTTATTTTCACGTGACTGAGCCTCTGATTTCAATATGCAGTCTGTGTTTTTCCCAGAAGTTCTTTTGTGTTATG-TAAAATTACTCTTTTGCACAGATTTTATTTG-----TTTTTTTGCCCCCCCtttgtttttatttatttttgtttgtttgttttttgttttttgttttttttgtttttttttgtttttCACTGTGAGTCAGTGATGCCAATGCTTGTGTATTTCGGATAGGGGTCTCAGGCTCTGTACTTCCAGGAGAAGCCCCCAGGAAAGTCTTAGCTGGCTCCTGAGGGGGCACATTTGCTGTGCTCACTGCA-----CTTTACCtggtgcaatgaagcataaagagcacaaacttggacaccaa-gcatctacattaaagtcctactcctttatgttagtaaatatgggatattggg-aagttgctgcacatttttgttgcccattttcttcactgaacaacagaaacagaaaa-atttcttcttaatagggattaagggagactcaaatagaacactgtatatgatgttcttttgtaaattgtaaaacaaagtacaaaGTTTCAAATATATTTATTATATGTATATATCT------------AGCTCTTTATCGATTCCATTTTGTTCAAAAA---ATTTATGTGTTCCAA------AAAATTATGGAGGTG---------------------------ATACATATATAAGT-------AGGGGATTTGTCAAATATAA-----ATATCATGGTGTACAAATAAGGCTGAGCAGC i chlSab2.chr14 C 0 C 0 s calJac3.chr14 5653704 1529 - 108792865 ATGCTCTT--TGGTACTGAAAAA----------TCTTTTTCTTCTATCTTATCCAAAATTTTT-GGTTGCTTTTATCAAGACTGTGGGTTTAAACAACTGAGCATATTATTTTACTGGATAAATGTGATTGTTT-TTTATTACCAATTCTTAATTATCCAGAGAATCTAGAAAAAAATGCATTTAACTCTTTGGCCAATTAAAACACAAATTTATTCCAAAAATGGATTATCTGTTCTT--ATGAAGCTATAATATATTAAAAAGAGATTTACTACAAAAAT---AA-----------------CAGTAAA-AATGTATCCTCTAACATGGCATG-AA------AATTATTCAGGATCTTGCAGTTTTCCCAGGTTCTTCTAACTGCCAGTGATCACCAATGAGCTGGACAACTGAAGACGTTACAAGCAATTGGCTGAAAT-TTTGATGCATCTTAAATGTATTTTAAAATGTGCCCCTAACTCTTCATTTTACCTGACTGTATTTCCGGGGCATTAGTTAAAGGGAAAACATCAGATCATGGGTTTAAGT-GAGGCTTCATTAGGCCAAGCCAAGGTGTtcaggtaagtacttg-cccctctacatgtcagcattctcacctgtaacataatacaagcaggactttgccagagtccctctcaacattttgtggagcatcagataaaataaagagcatgaatatgctttgtaaaccctgagtttctatacatatgcaag-----TATAAGAACTGGTAAGATGTAAAATGAACAAGGGAAATAAAATCCTGTTTTTATGTGTCAATTTTATGAATTACTGGAAAATTGAAGTGTATAGGAGTCTTCCTGAAGTCATTCACTATAATGCCTTTGGCTGGGTTTACT-------------------GCTGTTTGCAATGACAAGACTTAGACACTCAACAAGATCTTTTATTTTCACATGACTGCGCCTCTGATTTCAATATGCATTTTGTGTTTTTCCCAA----TCTTTTGTGTTATG-TACAATTACTTTGTTGAACAGATT----TTG-----TTTTT---------------TTCTGCCCCTTTGGGTTT--------------------CTTGTTTGTT---TTT--TTTTTAACTGTGAGACAGTTATGTCAACGCATATGTATTTCGGATGGGACTTGCAAACTTTGTACCTCCAGGAGAAACCCCA-GAGGGGTCTTAGCTGGCTCCTGA-GGGGCACGTTTGCTGTGCTCCCCCCA-----CCTTACCTGgtgccatgaagcataaagaacacagacttgggcaccca-gtgtctac-ttaaagtcc-gctcctttctgtt-gtaactgt-ggatattgga-aagttgctgcaccttttcgtggctcattttcttcactgaacaactgaaatagaaaa-atgtcttcttcatagagcttaagggagaataaaatacaacattgcatatgatgttcttttgtaaattgtaatgcaaagtacaaaATTTCAAATGTATTCATTATATGTATATATCT------------AGCTCTTCACT-CTTCCATTTTGTTCAAAAT----TTGATGTGTTCGAA------AAGATTATGGAGGTG---------------------------ATACATACATAAGT-------AGAGGATTTGTCAAATATAA-----ATATCATGATGAACAAATAAGGCTGAACAGC i calJac3.chr14 C 0 C 0 s canFam3.chr17 60743028 1577 - 64289059 aagcttctgatgctgttactatatatatatatttttttttttcctgtcttatccagaatttctcagttgttttcagcag---TGTCAGCGTGATTGACT-----TACT-TTTTATTGGA-AAGTACAATTATTCACTTTCTGCCCCCTCCTAATTACCCGAAGGATCTGGAC-ATGACTGATTT--CTCTTTAGTC---TAAGGCTCAAATCTATTCCaaaaa-----tatttattttttaataaaaCTATCCAAAGTT-AAAAGAGATTAAATGCATAAATTTGAATATTTATTCAGGATATTCAGGAAACTGAATATCCTCCAGTGTGATTAG-GACCTTGCAATCACCCCCGGTCCTCCAATAGACCCCGATCCTCCAATAGGCCCGTGATCACTAATGAGGTTAACAAATCAGGGTGCTTTAAATGAACAGTTTGAATCTTTGATGCGCCCTAACTGTGTTTATAA----------AGCGCTGTGGCTTAC---------TTC-AGGCGCTCTAGTTCAGTGGAAG---------CTGGGCTCTAAGTGGATGCTCCATTATTCCACAGCCAGTTGATTGGATATGAACCCGATCCCTCTGCATGTTAGTCTTCTCATTCGTAGCTTAGAGCAAATTGTACTTGA-CTGGGTCTCTCGAAGCAGTTGGGGGAGTGTCAGAGAAGAT--AGACCACACATGCG-TTTGTAAACC----ATTTCCATACGTGAATAAATATGTTCTAAGAACCAGTAAGGGACAGAATGAACAAGGGGAGTAAAATCCCATTTTTATGTTTCTCTTTCATGGATTCCAGGAAAATTAAACTTTATAGGAGTCTCTCTGAAGCAGCTCAATAGAATGCCATTGGCTGGGTTTGTTACTATTTTATACAAAAACAATTATTTGCAAAGAGAAGGCTCAGGCACCCAAAGCCACCTTTCATTT---CATTGCTTAGCCTCTGATTTCAATACACACCTTGTGTTTCTC-CAAAAATTCTTTTGAGTGATGTTGGCATGATTCTGTTGAAGAGATT----TTG-----TTTTA-------------------------------------------------------------------TT--CTTTGAACTGTGAGTCACTGATACCAATGCTTATGCATTTAGGATCTAGCTTGCAGGCTTTGTTCTTCTGGGAGAAGACCCCAGGAGGGTCTTAGCTGCCCCTTGAGGCAGCAGGCTTCCTTTGGTTCCTGCAGTTACCTTGACTAGGTCACGTGATG--------Acacagacctgggcacagatgcctgtgtcctgatgccccagacttttccatttctaagggcgggacactgggcaagtgactgcacatttta-gaactgattttcctcactgaaaaacaggaagggaaaacgtgtcctcttaataggatttgagggagaagcaaatagagcattttatttgatattcctttataaattgtaaagCAAAGTTCAAAATTTCAAATGCATTCATTATATCTATCTGTTTTAGCTTGTCCTAAACTATTTAC--TATCTATGTGATTTAAGCAAGtatatatatatataaatatatgaaatttatgtagatgaaatttatttatataaatatgtgaaatatatatatataAATTTATGAAAGAGAATTTGTTAAATCTAAGTGGGATATCATAGTGTATGAATAAGGCCGGCAAGC i canFam3.chr17 C 0 I 279 a score=276218.000000 s hg38.chr1_KI270765v1_alt 10834 111 + 185285 TTTTATTAACACATTGTCTGCAGCAC---------------------------------------------------AAAAAAACA--------------ATGCCTGGGCCTGAATAGGAACCATATGAAAATATTTCTTAAATCAGTGAAAGATTATTTAATAATTAAGAAAAAC s panTro4.chr1_AACZ03149435_random 116134 111 + 173505 TTTTATTAACACATTGTCTGGAGCAC---------------------------------------------------AAAAAAACA--------------ATGCCTGGGCCTGAATAGGAACCATATGAAAATATTTCTTAAATCAATGAAAGATTATTTAATAATTAAGAAAAAC i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chr2a 107060254 111 + 113028656 TTTTATCAACACATTATCTCCAATAC---------------------------------------------------AAAAAAACA--------------ATGCCTGGGCCTGAATAGGGACCACATGAAAATATTTCTTAAGTCAATGAAAGATTATTTAATAATTAAGAAAAAC i ponAbe2.chr2a C 0 C 0 s nomLeu3.chr19 76391617 160 - 81552678 TTTTATCAACACGTTATCTCCAGCACAAAAtccagcctgggcgacagagcgagactccgtctcaaaaaaaaa--aaaaaaaaataa--------------aTGCCTGGGCCTGAATAGGAACCACATGGAAATATTTCTTAAATCAATGAAAGATCATTTAATAATCAAGAAAACC i nomLeu3.chr19 C 0 C 0 s rheMac3.chr13 133310187 153 - 137160470 TTTTATCAACACATTATCTCCAGcac-----------------------acacacacacacacacacacacacccacacacacacacacacacacacaTAGTGCCTGGGCCCGAATAGGAACCTCATGAAAATATTTCTTAAATCAGTGAAAGATTATTTAATAATTAAGAAAAAC i rheMac3.chr13 C 0 C 0 s macFas5.chr13 105390254 151 + 111193037 TTTTATCAACACATTATCTCCAGcac-----------------------acacacacacacacacacacaca--cacacacacacacacacacacacaTAGTGCCTGGGCCCGAATAGGAACCTCATGAAAATATTTCTTAAATCAATGAAAGATTATTTAATAATTAAGAAAAAC i macFas5.chr13 C 0 C 0 s papAnu2.chr13 123099036 135 - 128036923 TTTTAACAACACATTAtctccagcac-----------------------acacacacacacacagacacaca--cacacacacaca----------------gcctggccCTGAATAGGAAcctcatgaaaatatttcttaaatcaatgaaagattatttaataattaagaaaaac i papAnu2.chr13 C 0 C 0 s chlSab2.chr14 102039500 137 + 107702431 TTTTATCAACACATTATCTCCAGcac-----------------------acacacacacacacacacacaca--cacacacacaca--------------GTGCCTGGGCCTGAATAGGAACCTCATGAAAATATTTCTTAAATCAATGAAAGATTATTTAATAATTAAGAAAAAC i chlSab2.chr14 C 0 C 0 s calJac3.chr14 5655233 111 - 108792865 TTTTACCAACACGTtgtctccagcac---------------------------------------------------agaaaagca--------------gtgcttgggcctgaataggaaccacacgaaaatatttcttaaatcaatgaaAGATTATTTAGCAATTAAGAAAAAC i calJac3.chr14 C 0 C 0 e canFam3.chr17 60744605 279 - 64289059 I a score=655643.000000 s hg38.chr1_KI270765v1_alt 10945 311 + 185285 Tggccaggtgtggtggctcatgcctgtagttc---cagcactttgggaggccgaggcgggcagatcacgaggtcagcagattgagaccatcctggctaacacggtgaaa-ccccatctctactaaaaatata--aatatt-----aaaaaaaaaaaaactagtcaggcgtggtggcgggcgcctgtagtcccagctactcgggacgctcaggcaggagaatggggtgaacccgggaggcggagcttgcagtgagccgagatagcgccactgcactccagcctgggcgatagagtgagactccgtctc-------aaa----aaaaaaaaaaaa s panTro4.chr1_AACZ03149435_random 116245 322 + 173505 Tgaccaggcgtggtggctcatgcctgtagtcc---cagcactttgggaggccgaggcgggcggatcacgaggtcagcagattgagaccatcctggctaacacggtgaaa-ccccatctctactaaaaatata--aatatta-aaaaaaaaaaaaaaaactagtcaggcgtggtggcgggcgcctgtagtcccagctacttgggacgctcaggcaggagaatggcgtgaagccgggaggcagagcttgcagtgagccgagatcgcgccactgcactccagcctgggcgatagagtgagactccgtctcaaaaaaaaaa----aaaaaaaaaaaa i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chr2a 107060365 309 + 113028656 Tggccaggcgtggtggctcatgcctgtaatcc---ccgcactttgggaggccgaggcgggcggatcacaaggtcaggagatcgagaccatcctggctaacatggtgaaa-ccccatctctattaaaaatata--aata-------caaaaaaaaaaacctagccaggcgtgctggcaggcgcctgtagtcccagctacccgggacgctcaggcaggagaatggcatgaatccgggaggcggagcttgcagtgagccgagatcgcgccactgccctccagcctgggcgacagagtgaaactccgtctc-------aaa----aaagaaaaaaaa i ponAbe2.chr2a C 0 C 0 s nomLeu3.chr19 76391777 316 - 81552678 Tggccaggtgtggtggctcatgcctgtaattc---cagcactttgggaggccgaggagggtggatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaa-ccgcatctctactgaaaatata--aatacaa----aaaaaaaaaaaaactaaccagacgtggtggtgggcacctgtagtcccagctactcgggaggctgaggcaggagaatggcgcgaatccaggaggcggagcttgcagtgagcagagatcgcgccactgcactcc--cctgggcgacagagtgagactccatctc-aaaaaaaga----aaaaaaaaaaaa i nomLeu3.chr19 C 0 C 0 s rheMac3.chr13 133310340 325 - 137160470 Tggcagggtgaggtggctcatgcctgtaatcccagcagcactttgggaggccgaggcagacacatcacgaggtcaggagatcgagaccatcctggttaacgtggtgaaa-ccccatctctactaaaaatacc-------aaaaaaaaaaaaaaagcaactagtcaggcatggtggtgggcgcctgtagtgccagctacttgggaggctgaggcaggagaatggcgtgaacttgggaggcagagtctgcagtgagcagagattgcaccactgcactccaacctgggcaacagggtgagactccatctcaaaaaaaaaaaaagaaaaagaaaaaa i rheMac3.chr13 C 0 C 0 s macFas5.chr13 105390405 330 + 111193037 Tggcagggtgaggtggctcatgcctgtaatcccagcagcactttgggaggccgaggcagacacatcacgaggtcaggagatcgagaccatcctggttaacgtggtgaaa-ccccatctctactaaaaataccaaaaaaaaaaaaaaaaaaaaaagcaactagtcaggcatggtggtgggcgcctgtagtgccagctacttgggaggctgaggcaggagaatggcgtgaacttgggaggcagagtctgcagtgagcagagattgcaccactgcactccaacctgggcaacagggtgagactccatctcaaaaaaaaaaaa--aaaaagaaaaaa i macFas5.chr13 C 0 C 0 s papAnu2.chr13 123099171 331 - 128036923 tggcagggtgaggtggctcacgcctgtaatcccagcagcactttgggaggccaaggcgggcagatcacgaggtcaggagattgagaccatgctggttaacatggtgaaacccccatctctactaaaaaatcc--aaaaaaaaaaaaaaaaaaaagcaactagtcaggcatggtggcgggcgcctgtagtgccagctactcgggacgctgaggcaggagaatggcgtgaacctgggaggcagagtctgcagtgagccgagattgcaccactgcactccaacctgggcaacagggcgagactccatctcaaaaaaaaaagaaaaaagaaaaaaaa i papAnu2.chr13 C 0 C 0 s chlSab2.chr14 102039637 326 + 107702431 Tggcagggtgaggtggctcatgcctgtaatcccagcagcactttgggaggccgaggcagacagatcacgaggtcaggagatcgagaccatcctggttaacatggtgaaa-ccccatctctactaaaaatacc--aaaaaaaaaaaaaaaaaaaggcaactagtcaggcatggtggtgggcacctgtagtgccagctacttgggaggctgaggcaggagaatggcgtgaacttgagaggcagagtctgcagtgagcagagattgcaccactacactccaacctgggcaacagggcgagactccatctcaaaaaaaaaa----aaaaagaaaaaa i chlSab2.chr14 C 0 C 0 e calJac3.chr14 5655344 0 - 108792865 C e canFam3.chr17 60744605 279 - 64289059 I a score=6086605.000000 s hg38.chr1_KI270765v1_alt 11256 2128 + 185285 aa---GGCGAAGACAA-GGGTGAGTTTAGAAGGTGAAATCTGTGCTGTATATACTGAGAAATTGCTTGGGA--------TGACTCATTTGATTCTGAATATCTGCATTAGCCAGTGCAggctggcgtaactaaatgccacagactggatggcataagcagcagaatttcattctcttacagttttgggggcagtgaagtccaagatcatgaagctggaagggtttggcgtctgttg-gggcctcttaccggcttgggctgctttttccttatgtggcctttatacatgtgaggtcgaggggagagacatctgtctctttctttcagtataaagccaccagtcctagtagactgaggtcccacccgtatgacctaatttgaccttaagtgcctactaaaggccctgcctgtcttcaaaaacagtcacatcagggatcagaacttttatacataagatttttgcagggacacgattcaatccaaagcaATATCTTATCAAGATAACgatat-gtttggctacgtctccacccaaatctcatcttgagctgtagttcccataatccccacctgacatgggagggacctggtggaaggtgattttatcatgggagcagttacctccatgctgttctcctgatagtaagtgagttttcatgagatctgatggttttataaggggcttttccctcctttt-tcccacctctctttgctgccgccatgtgaaaaaggacatatttgcttccccttctaccatgattgtaagtttcctgaggcctccacagccatgccgaactgtgagtcaattaaacctttttcctttataaatgtcccagtcttgggtatgtctttattaacagcttgagaagagacaaatacGGATAATATGATTGGTTAGACAATTTGAGAATCTTTATAATATTTTTCAAAAGAAACATAAATATTGTAA-TTTTTG-TCAAtaac--tgtttggtgagcaaggaagttaatttctttgaatgtg-tttttgtacttgtgaaatagggattataattcgtgcattgacttaatgttattataacactcaaagaatgtattgtgcactagtcctt-gcaaacccaagcaaagcccttgggttacacatgtgagttgtcatcattCAGTATTCCCCTTGCCATGGGAGGGGAAAGAAGCATGTATGATCTGCACTGCGATGCACACATGGGCCCCCTGGAGATGT-GGAGCAGGTGATGGATCTTCAGTCTCCATTAGAACCTTATTATTGGACATTTAGAAAAAGGCAGAAAAAGTTAGCAGCTCCAGAACTGCTGGATCGTGATTGTGCTTCTGTTTTGTAAATATCTCCATTGACTTCAAGTTACTGCCCACTCGGACCTACGATTCCAATCCCCCTCCCCATTCACCTACAGAATAATGAGACTGTGATTTAAACTAGAAAGCCAGTAGCTTTTCTTCTTTATTTTCTTTGAGTGATAGCCACAAAGGGGAGAGTTTAAGAAATAAGTCGTTGCTTGCATAAAGACTGCAGAGAAAAACCTTCATTTGTTTA-tttttttcctttcttctattttctattctAAAGCTGCATGTGGTCTCCTCCTAAAAGGAGTTTACTGGTAGCATGTTAAACATGTCTAAGACATTTCTGAATATTTGAATATAAATTATTTACATAACTTGTTAATTTATTTGCTTATGTAAAAGATATGGTGGGTCAATTGGGTAAATAGCTAGCCCACTGCAGACTACCTTGGCCTTTTTTTCTACCTGAATGCCTTGTGGCAATGAAAGAGTTGTGAAAAGGAGCAAAGAAGAAAAAGCAATTTATAGTCAAATTTTGAGAATTTTT-AAAAGAGGAGGAAGAGGAAAACAATTTGACAGAGAGAG-------------GAGGAAG-GGAGGAAAGTAAGAAGA----AAAT-AAAGGATCAT-----ATGTTAAAATCAGAAAGAAATATACAAAAACCTAAAGATGACATTGGAATCAATGAAAGCAAATATACTAGGGTCAGATTTTTGCCTCTCATCTCTAATCTAACACAGTCTATGTCAAATAGTTACAGCATCATAACTTCTGTCCCCTTTATTCAGAATTAGCAAAGTCTGAACTGACTTACCTGAACAGGAAGAACTAGTTGAGTAATTTCTTTTAgtagca s panTro4.chr1_AACZ03149435_random 116567 2128 + 173505 aa---GGCGAAGACAA-GGGTGAGTTTAGAAGGTGAAATCTGTGCTGTATATACTGAGAAATTGCTTGGGA--------TGACTCATTTGATTCTGAATATCTGCATTAGCCAGTGCAggctggcgtaactaaatgccgcagactggatggcataagcagcagaatttcattctgttacagttttgggggcagtgaagtccaagatcatgaagctggaagggtttggcgtctgttg-gggcctcttaccggcttgggctgctttttccttatgtggcctttatacatgtgaggtcgaggggagagacatctgtctctttctttcagtataaagccaccagtcctagtagactgaggtcccacccatatgacctaatttgaccttaagtgcctactaaaggccctgcctgtcttcaaaaacagtcacatcagggatcagaacttttatgcataagatttttgcagggacacaattcaatccaaagcaATATCTTATCAAGATAACgatat-gtttggctacgtctccacccaaatctcatcttgagctgtagttcccataatccccacctgacatgggagggacctggtggaaggtgattttatcatgggagcagttacctccatgctgttctcctgatagtcagtgagttttcatgagatctgatggttttataaggggcttttccctcctttt-tcccacctctctttgctgtcgccatgtgaagaaggacatatttgcttccccttctgccatgattgtaagtttcctgaggcctccacagctatgccgaactgtgagtcaattaaacctttttcctttataaatgtcccagtcttgggtatgtctttattagcagcttgagaagagacaaatacGGATAATATGATTGGTTAGACAATTTGAGAATCTTTATAATATTTTTCAAAAGAAACATAAATATTGTAA-TTTTTG-TCAAtaac--tgtttggtgagcaaggaatttaatttctttgaatgtg-tttttgtacttgtgaaatagggattataattcgtgcattgacttaatgttattataacactcaaggaatgtattgtgcactagtcctt-gcaaacccaagcaaagcccttgggttacacatgtgagttgtcatcattCAGTATTCCCCTTGCCATGGGAGGGGAAAGAAGCATGTATGATCTGCACTGCGATGCACACATGGGCCCCCTGGAGATGT-GGAGCAGGTGATGGATCTTCAGTCTCCATTAGAACCTTATTATTGGACATTTAGAAAAAGGCAGAAAAAGTTAGCAGCTCCAGAACTGCTGGATCGTGATTGTGCTTCTGTTTTGTATATATCTCCATTGACTTCAAGTTACTGCCCACTCGGACCTACGATTCCAATCCCCCTCCCCATTCACCTACAGAATAATGAGACTGTGATTTAAACTAGAAAGCCAGTAGCTTTTCTTCTTTATTTTCTTTGAGTGATAGCCACAAAGGGGAGAGTTTAAGAAATAAGTCGTTGCTTGCATAAAGACTGCAGAGAAAAACCTTCATTTGTTTA-TTTTTTTCCTTTCTTCTATTTTCTATTCTAAAGCTGCATGTGGTCTCCTCCTAAAAGGAGTTTACTGGTAGCATATTAAACATGTCTAAGACACTTCTGAATATTTGAATATAAATTATTTACATAACTTGTTAATTTATTTGCTTATGTAAAAGATATGGTGGGTCAATTGGGTAAATAGCTAGCACACTGCAGACTACCTTGGCCTTTTTTTCTACCTGAATGCCTTGTGGCAATGAAAGAGTTGTGAAAAGGAGCAAAGAAGAAAAAGCAATTTATAGTCAAATTTTGAGAATTTTT-AAAAGAGGAGGAAGAGGAAAACAATTTGACAGAGAGAG-------------GAGGAAG-GGAGGAAAGTAAGAAGA----AAAT-AAAGGATCAT-----ATGTTAAAATCAGAAAGAAATATACAAAAACCTAAAGATGACATTGGAATCAATGAAAGCAAATATACTAGGGTCAGATTTTTGCCTCTCATCTCTAATCTAACACAGTCTATGTCAAATAGTTACAGCATCATAACTTCTGTCCCCTTTATTCAGAATTAGCAAAGTCTGAACTGACTTACCTGAACAGGAAGAACTAGTTGAGTAATTTCTTTTAgtagca i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chr2a 107060674 2125 + 113028656 aaaTTGGCAAAGACAA-GGGTGAGTTTAGAAGGTGAAATCTGTGCTGTGTATACTGAGAAATTGCTTGGGG--------TGACTCATTTGATTCTGAATATCtgcattagccagcgcaggctggcataactaaatgccacagactggatggcataagcagcagaatttcattctgttacagttttgggggcagggaagtccaagatcatggagctggaagggtttggcatctgttg-gggcctcttactggcttgggctgctttttcctcatgtggcctttatacatgtgaggttgaggggagagacatctgtctctttctttcagtataaagccaccagtcctagtagactgaggttccacccttatgacttaatttgaccttaagtgcctactaaaggccctgcctgtcttcaaaaacagtcacatcagggatcagaacttttatacataagatttttgcagggacacaattcaatccaaagcaATATCTTATCAAGATAACGAtat-gtt----------tccacccaaatctcatcttgaactgtagttcccataatccctacctgacctgggagggacctggtggaaggtgattttatcatgggagcagttaccttcatgctgttctcctgttagtaagtgagttttcatgagacctgatggttttataaggggtttttccctcttttt-tcccacgtctctttgctgccgccatgtcaagaaggacatatgtgcttccccttctgccatgattgtaagtttcctgaggtctccacagccatgccgaactgtgagtcagttaaacctttttcctttataaatttcccagtcttggatatgtctttattagcagcttgagaagagacaaatacaGATAATATGACTGGTTAGACAATTTGAGAATCTTTATAATATTTTTCAAAAGAAACATAAATATTGTAT-TTTTTTCTCAGTAAC------TGGtgagcaaggaatttaatttctttgaatgtgttttttgtacttgtgcaatagggattataattcgtgcattgacttaatattattataacactcaaagaatgtatcatgcactagtcctcagtaaactgtagcaaagcccttgggttacacatgtgagttgtcatcattCAATGTCCCCCTTGCCGTGGGA-GGGAAAGAAGCATGTATGACTGGCACTGTGATGCACACATGGGCCCCCTGGAGATGT-GGAGCAGGTGATGGATCTTCAGTCTCCATTAGAACCTTATTACTGGACATTTAGAAAAAGGCAGAAAAAGTTAGCAGCTCCAGAACTGCTGGATCATGATTGTGCTTCTGTTTTGTATATATCTCCATTGACTTCAAGTTACTGCCCTCTTGGACCTACAATTCCAAACCCCCTCCCCATTCACCCACAGAATAATGAGACTGTGATTTAAACTAGAAAGCCAGTAGCTTTTCTTCTTTATTCTCTTTGAGTGGTGGCCACAAAGGGGAGAATTTAAGAAATATGTCGTTGTTGGCATAAAGAGAGCAGAGAAAAACCTTCATTTGTTTATTTTTTTTCCTTTCTTCTATTTTCTATTCTAAAGCTGCATGTGGTCTCCTCCTAAAAGGAGTTTACTGGTAGCATATTAAACATGTCTAAGACACTTCTGAATATTTGAATATAAAGTATTTACATAACTTGTTAATTTATTTGTTTATATAAAAGATATGGTGGGTCAACTGGGTAAATAGCTAGCACACTGCAGACTACCTTGGCCTTTTTTTCTACCTGAATGCCTTGTGGCAATGAAAGAGTTGTGAAAAGGAGCAAAGAAGAAAAAGCAATTTATAGTCAAATTTTGAGAATTTTT-AAAAGAGGAGGAAGAGGAAAACAATTTGACAGAGAAAG-------------GAGGAAGAGGAGGAAAGTAAGAAGAAAATAAAT-AAAGGATCAT-----ATATTAAAATCAGAAATAAATATACAAAAACCTAAAGATGACATTGGAATCAATGAAAACAAGTATACTAGGGTCAGATTTTTGCCTCTCATCTCTAATCTAACACAGTCCATGTAAAATAGTTACAGCATCATAACTTCTGTCCTCTTTATTCAGAATTAGCAAAGTCTGAACTGACTTACCTGAACAGGAAGAACTAGTTGAGTAATTTCTTTTAgcagca i ponAbe2.chr2a C 0 C 0 s nomLeu3.chr19 76392093 2121 - 81552678 aa---GGCAAAGACAA-GGGTGAGTTTAGAAGGTGATATCTGTGCTGTGTATACTGAGAAATTGCTTGGGG--------TGACTCATTTGATTCTGAATATCTGCATTAGCCAGTGCAggctggcataactaaatgccacagactggatgacataagcagtagaatttcattctgttacagttttgaggggagggaagtccaagatcatggagctggaagggtttggcgtctgttg-ggacctcttactggcttgtgctgcttttacctcatgtggcctttatacatgtgagttcgaggggagagacatctgtc----tctttcagtataaagccaccagtcctagtagactgaggtcccactcgtatgacctaattggaccttaagtgcctgctaaaggcgctgcctgtcttcaaaaacagtcacatcagggatcagaacttttgtacataagatttttgcagggacacaattcaatccaaagcaATATCTTATCAAGATAAtgatatggtttggctatgtctccacccaaatctcatcttgaactgtagttcccataatccccacctgacatgggagggacctggcggaaggtgattttatcatgggagcagttacctccatgctgttctcgtgatagtaagtgagtttttatgagatctgatggttttgtaaggggcttttccctcctttt-tcccacctctctttgctgccgccatgtgaagaaggacatatttgctttcccttctgccatgattgtaagtttcctgaggcctccacagccatgccgaactgtgagtcaattaaacctttttccgttatatatttcccagtcttggatatgtctttattagcagcttgagaagagacaaatacaGATAATATGATTGGTTAGACAATTTGAGAATCTTTATAATATTTTTCAAAAGAAACACTAATGTTGTAT-TTTTTG-TCAATAAC--TATTTGGtgagcaaggaatttaatttctttgagtgtgttttttctacttgtgaaatagggattgtaattcgtgcattgacttaatgttattataacactcaaagaatgtatcatgcactagtcctcagtaaactgtagcaaagcccttgggttacacatgtgagttgtcatcattCAATGTCCCCCTTGCCATGGGAGGGGAAAGAAGCACGTATGACTGGCACTGCAATGCACACATGGGCCTCCTGGAGATGT-GGAGCAGGTGATGGATCTTCAGTCTCCGTTAGAACCTTATTATTGGACATTTAGAAAAAGGCAGAAAAAGTTAGCAGCTCCAGAACTGCTGGATCACGATTGTGCTTCTGTTTTGTATATATCTCCATTGACTTCAAGTTACTGCCCACTCGGGCCTACGATTCCAATCCCCCTCCCCATTCACCTACAGAATAATGAGACTGTGATTTAAACTAGAAAGCCAGTAGCTTTTTTTCTTTATTTTCTTTGAGTGATAGCCACAAAGGGGAGAGTTTAAGAAATAAGTCGTTGTTTGCATAAAGAGAGCAGAGAAAAACCTTCAtttgttta-tttttttcctttcttctattttctattCTAAAGCTGCATGTGGTCTCCTCCTAAAAGGAGTTTACTGGTAGCATATCAAACGTGTCTAAGACACTTCTGAATATTTGAATATAAATTATTTACATAACTTTTTAATTTATTTGTTTATATAAAAGACACGGTGGGTCAATTGGGTAAATAGCTAGCACACTGCAGACTACCTTGGCCTTTTTTTCTACCTGAATGCCTTGTGGCAATGAA--AGTTGTGAAAAGGAGCAAAGAAGAACAAGCAATTTATAGTCAAA-TTTGAGAATTTTTAAAAAGAAGAGGATGAGGAAAACAATTTGACAGAGAAA----------------------GGAGGAAAGTAAGAAGAAAATAAAT-AAAGGATCGT-----ACATTAAAATCAGAAAGAAATATACAAAAACCTAAAGATGACATTGGAATCAATGAAAACAAATATACTAGGGTCAGATTTTTGCCTCTCATCTCTAATCTAACACAGTCTATGTCAAATAGTTACAGCATCATAACTTCTGTCTTCTTTATTCAGAATTATCAAAGTCTGAACTGACTTACCTGAACAGGAAGAACTAGTTGAGTAATTTCTTTTAgcagca i nomLeu3.chr19 C 0 C 0 s rheMac3.chr13 133310665 2130 - 137160470 aaCATGACAAAGACAA-GGATGAGTTTAGAAGGTGATATCTGTGCTGTGTATACTGAGAAATTGCTTGGGG--------TGACTCATTTGATTCTGAATATCTGCATTAGCCAGTGCAggctggcatagcaaaatgccacagactggatggcatcaacagtagaatttcattttgttacagttttgggggcagggaagtccaagatcatagggttggaaggctttggtgtttgttgcgggcctcttactggcttgggctgcttttccctcatgtggcctttgtacaagtgaggtcaaggggagacacatct----ctttctttccttataaagtcaccagtcctagtagactgaggtcccaccc-tatgacctaatttgaccttaagtgcctactaaagaccctgcctgtcttcaaaaacagtcacatcagggatcagaacttttatacataagatttttgcagggacacaattcagtccaaagcaATATCTTATCAAGATAAtgatatggtttggctatgtctccacacaaatctcgtcttgaacagtagttcccgtaatccccacctgacatgggagggacccggtagaaggtgattttatcatggcagtagttacctccatgctgttctcgtaat----agtgagttttcatgagatctgatggctttataaggggcatttccctcctttt-tcccacctctcttttctgccgccacgtgaagaaggacatattttcttctctttctgccatgattgtaagtttcctgaggcct-cccagccatgccgag--gcgagtcaattaaacctttttcctttataaatttcccagtattggatatgtctttaagagcagcttgagaagagacaaataGAGATAATATGATTGGTTAGACAATTTGAGAATCTTTATAATATTTTTCAAAAGAAACACAAATATTGTAT-TTTTTG-TCAGTAAT--TATTTGGtgagcaaggaatttaatttctttgagtatgttttttctacttgtgaaataggaattataatccatgcattgacttaatgttattacaacactcaaagaatgtattgtgcactagtcctcagtaaactgtaGCAAAACCCTTGGGTTACACATGTGAGTTGTCGTCATTCAATGTCACCCTTGCCATGGGAGAGGAAGGAAGCATGTACGACTGGCACTGTGATCCACACATGGGTCCCCTGGAGATGT-GGAGCAGGTGATGGATCTTCAGTCTCCATTAGAACCTTATTATTGGACATTTAGAAAAAGGCAGAAAA----AGCAGCTCCAGAACTGCTGGATCATAATTGTGCTTCTGTTTTGTATGTATCTCTATTGACTTCAAGTTACTGCCCACTCGGATCTATAGTTCCAAG-CCCCTCCCCATTCACCCACAGAATAATGAGACTGTGATTTAAACTAGAAAGCCAGTAGCTTTTCTTCTTTATTGTCTTTGAGTGATAGCCACAAAGGGAAGAGTTCAAGAAATATGTCGTTGTTGGCATAAAGAGAGCAGAGAAAAACCTTCATTTGTTTA-TTTTTTTCCTTTCTTCTATTTTCTATTTTAAAGTTGCATGTGGTCTCCTCCTAAAAGGAGTTTACTGGTAGCATATTAAACATGTCTAAGACACTTCTGAATATTTGAATATAAATTATTTACATAACTTGTTAATTTATTTTTTTAGATAAAAGATATGGTGGGTCAATTGGGTAAACAGCTAGCACACTGCAGACAACCTTGGCCTTTTTTCCTACCTGAATGCCTTGTGGCAATGAAAGAGCTGTGAAAAGGAGCAAAGAAGAAAAAGCAATTTATAGTCAAATTTTGAGAATTTTTAAAATGGGGAGGAAGAGGAAAACAATTTGACAGAGAAAG-------------GTGGAAGCAGAGGAAAGTAAGAAGAAAATAAATAAAAGGATCATATTAGATGTTAAAATCAGAAAGAAATATACAAAAACCTAAAGATGACATTGAGATCAATGAAAACAAATATACTAGGGTCATATTTTTGCCTCTCATCTCTAATCTAACACAGTCCCTGTCAAATCGTTACAGTATCATCACTTCTGTCTTCTTTATTCAGAATTATCAAAGTCTGAACTGACTTCCCTGAACAGGAAGAACTAGTTGATTAATTTCTTTTAgcagca i rheMac3.chr13 C 0 C 0 s macFas5.chr13 105390735 2130 + 111193037 aaCATGACAAAGACAA-GGATGAGTTTAGAAGGTGATATCTGTGCTGTGTATACTGAGAAATTGCTTGGGG--------TGACTCATTTGATTCTGAATATCTGCATTAGCCAGTGCAggctggcatagcaaaatgccacagactggatggcatcaacagtagaatttcattttgttacagttttgggggcagggaagtccaagatcataaggttggaaggctttggtgtttgttgcgggcctcttactggcttgggctgcttttccctcatgtggcctttgtacaagtgaggtcaaggggagacacatct----ctttctttccttataaagtcaccagtcctagtagactgaggtcccaccc-tatgacctaatttgaccttaagtgcctactaaagaccctgcctgtcttcaaaaacagtcacatcagggatcagaacttttatacataagatttttgcagggacacaattcagtccaaagcaATATCTTATCAAGATAAtgatatggtttggctatgtctccacacaaatctcgtcttgaacagtagttcccgtaatccccacctgacatgggagggacccggtggaaggtgattttatcatggcagtagttacctccatgctgttctcgtaat----agtgagttttcatgagatctgatggctttataaggggcatttccctcctttt-tcccacctctcttttctgccgccacgtgaagaaggacatattttcttctctttctgccatgattgtaagtttcctgaggcct-cacagccatgccgag--gcgagtcaattaaacctttttcctttataaatttcccagtattggatatgtctttaagagcagcttgagaagagacaaataGAGATAATATGATTGGTTAGACAATTTGAGAATCTTTATAATATTTTTCAAAAGAAACACAAATATTGTAT-TTTTTG-TCAATAAT--TATTTGGTGAGCAAGGAATTTAATTTCTTTGAGTATGTTTTTTCTACTTGTGAAATAGGGATTATAATCCATGCATTGACTTAATGTTATTACAACACTCAAAGAATGTATTGTGCACTAGTCCTCAGTAAACTGTAGCAAAACCCTTGGGTTACACATGTGAGTTGTCGTCATTCAATGTCACCCTTGCCATGGGAGAGGAAGGAAGCATGTACGACTGGCACTGTGATCCACACATGGGTCCCCTGGAGATGT-GGAGCAGGTGATGGATCTTCAGTCTCCATTAGAACCTTATTATTGGACATTTAGAAAAAGGCAGAAAA----AGCAGCTCCAGAACTGCTGGATCATAATTGTGCTTCTGTTTTGTATGTATCTCTATTGACTTCAAGTTACTGCCCACTCGGATCTATAGTTCCAAG-CCCCTCCCCATTCACCCACAGAATAATGAGACTGTGATTTAAACTAGAAAGCCAGTAGCTTTTCTTCTTTATTGTCTTTGAGTGATAGCCACAAAGGGAAGAGTTCAAGAAATATGTCGTTGTTGGCATAAAGAGAGCAGAGAAAAACCTTCATTTGTTTA-tttttttcctttcttctattttctattctAAAGTTGCATGTGGTCTCCTCCTAAAAGGAGTTTACTGGTAGCATATTAAACATGTCTAAGACACTTCTGAATATTTGAATATAAATTATTTACATAACTTGTTAATTTATTTTTTTAGATAAAAGGTATGGTGGGTCAATTGGGTAAATAGCTAGCACACTGCAGACAACCTTGGCCTTTTTTCCTACCTGAATGCCTTGTGGCAATGAAAGAGCTGTGAAAAGAAGCAAAGAAGAAAAAGCAATTTATAGTCAAATTTTGAGAATTTTTAAAATGGGGAGGAAGAGGAAAACAATTTGACAGAGAAAG-------------GTGGAAGCAGAGGAAAGTAAGAAGAAAATAAATAAAAGGATCATATTAGATGTTAAAATCAGAAAGAAATATACAAAAACCTAAAGATGACATTGAGATCAATGAAAACAAATATACTAGGGTCATATTTTTGCCTCTCATCTCTAATCTAACACAGTCCCTGTCAAATCGTTACAGTATCATCACTTCTGTCTTCTTTATTCAGAATTATCAAAGTCTGAACTGACTTACCTGAACAGGAAGAACTAGTTGATTAATTTCTTTTAgcagca i macFas5.chr13 C 0 C 0 s papAnu2.chr13 123099502 2130 - 128036923 aacatgacaaaGACAA-GGATGAGTTTAGAAGGTGATATCTGTGCTGTGTATACTGAGAAATTGCTTGGGG--------TGACTCATTTGATTCTGAATATCTGCATTAGCCAGTGCAGGCTGGCATagcaaaatgccacagactggatGGCATCAACAGCAGAATTTCATTTTGTTACAGTTTTGGGGGCAGGGAAGTCGAAGATCGTGGGGTTGGAAGGCTTTGGTGTTTGTTGCGGGCCTCTTACTGGTTTGGGCTGCTTTTCCCTCATGTGGCCTTTGTACAAGTGAGGTCAAGGGGAGAcacatct----ctttctttccttataaagTCACCAGTCCTAGTAGACTGAGGTCCCACCC-TATGACCTAATTTGACCTTAAGTGCCTACTAAAGACCCTGCCTGTCTTCAAAAACAGTCACATCAGGGATCAGAACTTTTATACATAAGATTTTTgcagggacacaattcagtccaaaGCAATATCTTATCAagataatgatatggtttggctatgtctccACACAAATCTCGTCTTGAACAGTAGTTCCCGTAATCCCCACCTgacatgggagggacctggtggaaggtgattttATCATGGCAgtagttacctccatgctgttctcgtaat----agtgagttttcatgagatctgatggctttataaggggcaTTTCCCTCCTTTT-TCCCACCTCTCTTTTCTGCCGCCACGTGAAGAAGgacatattttcttctctttctgccatgattgtaagtttcctgaggcct-cacagcCATGCCAag--gcgagtcaattaaacctttttcctttataaatttcccagtatTGGATATGTCTTTAAGAGCAGCTTGAGAAGAGACAAATAGAGATAATATGATTGGTTAGACAATTTGAgaatctttataatatttttcaaaagaaacacaaatattgtat-tttttg-tcaATAAT--TATTTGGTGAGCAaggaatttaatttctttgagtaTGTTTTTTCTACTTGTGAAATAGGGATTATAATCCATGCATTGACTTAATGTTATTACAACACTCAAAGAATGTATTGTGCACTAGTCCTCAGTAAACTGTAGCAAAACCCTTGGGTTACACATGTGAGTTGTCGTCATTCAATGTCACCCTTGCTatgggagaggaaggaagcatGTACGACTGGCACTGTGATCCACACATGGGTCCCCTGGAGATGTGGGAGCAGGTGATGGATCTTCAGTCTCCATTAGAACCTTATTATTGGACATttagaaaaaggcagaaaa----agcagCTCCAGAACTGCTGGATAATGATTGTGCTTCTGTTTTGTATGTATCTCCATTGACTTCAAGTTACTGCCCACTCGGATCTACAATTCCAAG-CCCCTCCCCATTCACCCACAGAATAATGAGACTGTGATTTAAACTAGAAAGCCAGtagcttttcttctttattgtctTTGAGTGATAGCCACAAAGGGAAGAGTTCAAGAAATATGTCATTGTTGGCATAAAGAGAGCAGAGAAAAaccttcatttgttta-tttttttcctttcttctattttctattctaaAGTTTCATGTGGTCTCCTCCTAAAAGGAGTTTACTGGTAGCATATTAAACATGTCTAAGACacttttgaatatttgaatataaattatttacatagcttgttaattta-ttttttagataaaagaTATGGTGGGTCAATTGGGTAAATAGCTAGCACACTGCAGACAACCTTGGCCTTTTTTCCTACCTGAATGCCTTGTGGCAATGAAAGAGCTGTGAAAaggagcaaagaagaaaaagcaatttatagtcaaattttgagaatttttaaaatggggaggaagaggaaaacaaTTTGACAGAGAAAG-------------GCGGAAGCAGAGgaaagtaagaagaaaataaattaaaggatCATATTAGAtgttaaaatcagaaagaaatatacaaaaaccTAAAGATGACATTGAgatcaatgaaaacaaatatactaGGGTCATATTTTTGCCTCTCATCTCTAATCTAACACAGTCCCTGTCAAATCGTTACAGTATCATCACTTCTGTCTTCTTTATTCAGAATTATCAAAGTCTGAACTGACTTACCTGAACAGGAAGAACTAGTTGATTAATTTCTTTTAGCAGCA i papAnu2.chr13 C 0 C 0 s chlSab2.chr14 102039963 2129 + 107702431 aaCATGACAAAGACAA-GGATGAGTTTAGAAGGTGATATCTGTGCTGTGTATACTGAGAAATTGCTTGGGG--------TGACTCATTTGATTCTGAATAT-TGCATTAGCCAGTGCAggctggcatagcaaaatgccacagactggatggcatcaacagcagaatttcattttattacagttttgggggcagggaagtccaagatcgtagggttggaaggctttggtgtttgttgcgggcctcttactggcttgggctgcttttccctcatgtggcctttgtacaagtgaggtcaaggggagacacatct----ctttctttccttataaagtcaccagtcctagtagactgaggtcccaccc-tatgacctaatttgaccttaagtgcctactaaagaccctgcctgtcttcaaaaacagtcacatcagggatcagaacttttatacataagatttttgcagggacacaattcagtccaaagcaATATCTTATCAAGATAAtgatatggtttggctatgtctccacacaaatctcgtcttgaacagtagttcctgtaatccccacctgacatgggagggacccggtggaaggtgattttatcatggcagtagttacctccatgctgttctcgtaat----agtgagttttcatgagatctgatggttttataaggggcatttccctcctttt-tcccacctctcttttctgccgccacatgaagaaggacatattttgttctctttctgccatgattgtaagtttcctgaggcct-cacagccatgccgag--gcgagtcaattaaacctttttcctttataaatttcccagtattggatatgtctttaagagcagcttgagaagagacaaataGAGATAATATGATTGGTTAGACAATTTGAGAATCTTTATAATATTTTTCAAAAGAAACACAAATATTGTAT-TTTTTG-TCAATAAT--TATTTGGTGAGCAAGGAATTTAATTTCTTTGAGTATGTTTTTTCTACTTGTGAAATAGGGATTATAATCCATGCATTGACTTAATGTTATTACAACACTCAAAGAATGTGTTGTGCACTAGTCCTCAGTAAACTGTAGCAAAACTCTTGGGTTACACATGTGAGTTGTCGTCATTCAACGTCACCCTTGCCATGGGAGAGGAAGGAAGCATGTACGCCTGGCACTGTGATCCACACATGGGCCCCCTGGAGATGT-GGAGCAGGTGATGGAGCTTCAGTCTCCACGAGAACCTTATTGTTGGACATTTAGGAAAAGGCAGAAAA----AGCAGCTCCAGAACTGCGGGATCATGACTGTGCTTCTGTTTTGTATGTATCTCCATTGACTTCAAGTTACTGCCCACTCGGATCTACAATTCCAAG-CCCCTCCGCATTCACCCACAGAATAATGAGACTGTGATTTAAACTAGAAAGCCAGTAGCTTTTCTTCTTCATTGTCTTTGAGTGATAGCCACAAAGGGAAGAGTTCAAGAAATATGTCATTGTTGGCATAAAGAGAGCAGAGAAAAACCTTCATTTGTTTA-tttttttcctttcttctattttctattctAAAGTTGCATGTGGTCTCCTCCTAAAAGGAGTTTACTGGTAGCATATTAAACATGTCTAAGACAATTCTGGATATTTGAATATAAATTATTTACATAACTTGTTAATTTTTTTTTTTAGATAAAAGATATGGTGGGTCAATTGGGTAAATAGCTAGCACACTGCACACAACCTTGGCCTCTTTTCCTACCTGAATGCCTTGTGGCAATGAAAGAGCTGTGAAAAGGAGCAAAGAAGAAAAAGCAATTTATAGTCAAATTTTGAGAATTTTTAAAATGGGGAGGAAGAGGAAAACAATTTGACAGAGAAAG-------------GCGGAAGCAGAGGAAAGTAAGAAGAAAATAAATAAAAGGATCATATTAGATGTTAAAATCAGAAAGAAATATACAAAAACCTAAAGATGACATTGAGATCAATGAAAACAAATATACTAGCGGCATATTTTTGCCTCTCATCTCTAATCTAACACAGTCCCTGTCAGATCATTACAGTATCATCACTTCTGTCTTCTTTATTCAGAATTATCAAAGTCTGAACTGACTTACCTGAACAGGAAGAACTAGTTGATTAATTTCTTTTAgcagca i chlSab2.chr14 C 0 C 0 s calJac3.chr14 5655344 2134 - 108792865 ---ATGGCAAAGAAAATAAGTGGGTTTAGAAGGTAAAATCTGTGCTGTGTATACTTAGAAAGTGCTTAGGGTATGTGACTGACTCATTTGATTCTGAACATCtgtattagccagtgcagg-tggcataacaaaatatcacagtctcgacatcacacacagcagaatttcatttacttacagttttgggggcaggaaagtccaagatcatggcgttgggagggtttggtttttggtgagggccgcttataggcttggactgctttttcctcatgtgatctttgtacacacatggtcagggggagagacatct----gactctttcattataaagcca-----cctattagactgaagtcccactcttgtgacctaatttgactttaagtacctactgaagaccatagctgtctccagaaacagtcacatcggggatcagaacttttatacataagaattttgca-agacacgattgaatccaaagcaATATCTTACGAAGATAAtgatacagtttggctctgtctccacccaaacctcgtcttgaaccgtagctcccgtaatccccacctgtcatgagggggacctggcgggaggtgatttaatcatgggtgcagttacctccatgctgttctagtaagagtcagtgagttttcatgagacctgatggttttatatggggcttttccctccttttcccccacttctctttcctgtcgccatgtgaagaagtgcgtaggtgcttccccttctgccaggattgtaagtttcctgaggcctccacagccatgctgaactgtgagttgattaaacctctttcctttgtcaattacccagtcttgggtatgtctttattagcagcttgagaacaagcaaatacaGATAACATGATTGGTTAGACAATCAGAGGATCTTTACAATATTTTTCAAAAGA---ATAAATATTGCATATTTTTG-TCAATAACAGTATTTGAAgagcaaggcatttcatttcttcgagtgtgttttttctatttgtgaaatagggattataatTCGAGTATTAACTTA-------CATAACACTGGAAGAATGTATGGTGCCCTAGGCCTTAGTAAACAGAAGCAAAGCCCTT-CGTTACGCATGTGAGTTGTCATCAGTAAATACCGCCCTTGCCATGGGA-GGGAAGGAAGCATGCATGGCTGTCACTGTGATCCACATACGGG-CCCCTGGAGATGT-GGAGCGGGTGATGGATCTTCAGTCTCCATTAGAACCTTGTCATTGGAC-TTTAGAAAAAGGCAGAAAAAGTGAGCAACTCCAGAACTGCTGGATCATGATTGTGCGTCTGTTTTGTATACATCTCTGTTGACTTCAAATTACTGCCCACTCAGACCTACGATTCCAACCCCTCTCCCCATTCACCCACAGAATAACAAGACTGTGATTTAAATTAGAAAGCAAGTAGCTTTTCTTCTTCATTCTCTTTGAGTGATGGCCAC-AAGTGTAGAGTTTAAGAAATATGTAGCTCTTGGCATAAAGAGAGCAAAGAAAAACCTTCTGTTGTTTA-TTTTTTTCTT--------TCTTCTAGTCTAAAGTTGCATGTGGTCTCTCCCTAAAAGAAGTTTGCTGATGACATATTAAACATGTCTAAGACACCTCTGAATATTTGAATATAAATTATTTACATAACTTGTTAATTTCTTTGTTTATATGAAGGATATGGTGGGTCAATTGGATAAATAGCCAGCACACTGCAGACAATCTGGAC--TTTTTTCTACCTGAATGACTTGTGGCAATGAAAGATTTGTGAAAAGAAGCAAAGAAGAAAAAGTAATTTTGAGTCCAATGTTGAGAATTTTTaaaaaggacaggaagaggtaaacaatttgacagaaaaagaaggagaaagaaagaggaagaggagaaaagtaagaagaaaataaataaaATAATTATATTAGTTGTGAAAATCAGAAAGAAATATATGAAAACCTAAAGATGATATTGGAAGCAATGAAAACAAATATACTAGGGTGAGATGTTTGTCTCTCATATCTAATGTAACACAGTCCATGTTAAATAGTTACAGCATCATAACTTCTGTCTTTTTTATTCAGGATTATCAGACTCTGAACTGACTTACCTGAACAGGAAGAACTAGTTGATAAATTTCTTTTAGCATCA i calJac3.chr14 C 0 I 13 e canFam3.chr17 60744605 279 - 64289059 I a score=748345.000000 s hg38.chr1_KI270765v1_alt 13384 340 + 185285 tggtagtggaaaattttagaatcatataaacttaggttgaaaattctgctcctttactctcccgccctgtgacttcaggtaagcttgttgatctttccaacttcagtttcttcttctgtaaaatagagatagtaggacctgccttataTATTAAATATACATATAAACCATAGAGATGCCTCTGAAATTAGCATAAGCTCCTTTGGAAATTGAAAATGGCAATGTTtgggataactttcaccgtttatgtgtttgctgaaggtaaaaatatcagttaaaaatatctttcactgaaacaagaggaaatttactcttaaataagaatacttTACGCATCGAG s panTro4.chr1_AACZ03149435_random 118695 340 + 173505 cggtagtggaaaattttagaatcatataaacttaggttgaaaattctgctcctttactctcccgccctgtgacttcaggtaagcttgttgatctttccaacttcagtttcttcttctgtaaaatagagatagtaggacctgccttataTATTAAATATACATATAAACCATAGAGATGCCTCTGAAATTAGCATAAGCTCCTTTGGAAATTGAAAATGGCAATGTTtgggataactttcaccgtttatgtgtttgctgaaggtaaaaatatcagttaaaaatatctttcactgaaacaagaggaaatttactcttaaataggaatactttacgcatcgag i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chr2a 107062799 332 + 113028656 tggtagtggaaaactttagaatcatataaacttagattgaaaattctgctcatttactctcccgccctgtgacttcaggtaagcttgttgatctttcaaacttcaatttcttcttccgtaaaattgagatagtaggacctgccttataTATTAAATATACATATAAACCATAGAGATGCCTCTGAAATTAGCATAAGCTCCTTTGGAAATTGAAAATGGCAATGTTTGGGATAACTTTCACCATTTATGTGTTTGCTGAAGGTAAAAATATCAGTTAAAAATATCTTTCACTGAAACAAG--------TACTCTTAAATAGGAATACTTTACGTATTGAG i ponAbe2.chr2a C 0 C 0 s nomLeu3.chr19 76394214 300 - 81552678 tggaagtggaaaactttagaatcatataaacttaggttgaaaattctgctcctttactctcctgccctgtgacttcaggtaagattgtttatcttttgaacttcggtttcttcttctgtaaaacgtagatattaggacctgccttataTATTAAATATACATATAAGCCATAGAGATGCCTCTGAAATTAGCATAAGCTCCTTTGGAAATTGAAAATGGCAATGTTTGGGATAACTTTCACCATTTACGTGTTTGCTGAAGGTAAAAATATCAgttaca----------------------------------------aggaatactttatgcatcgag i nomLeu3.chr19 C 0 C 0 s rheMac3.chr13 133312795 339 - 137160470 aggtagtgg-aaacttcagaatcatataaacttaggctgaaaattctgctcctttaatctcccgccctgtgacttcaggtaagcttgttgatcttttgaacttcagtttcttcttctgtaaattggagatattaggacctgcctTCTATATTAAATACACAAATAAACCATAGAGATGCCTCTGAGATTAGCGGAAGCTCCTTTGGACATTGAAAATGGCAATGTTtgggataactttcactgtttatgtgttggctgaaggtaaaaatatcagttgccaatatctttccctgaaacaagaggaaatttactcttaaatatgaacactttatgcatcgag i rheMac3.chr13 C 0 I 141 s macFas5.chr13 105392865 339 + 111193037 aggtagtgg-aaacttcagaatcatataaacttaggctgaaaattctgctcctttactctcccgccctgtgacttcaggtaagcttgttgatcttttgaacttcagtttcttcttctgtaaattggagatattaggacctgccttctatattaaatacACAAATAAACCATAGAGATGCCTCTGAGATTAGCGGAAGCTCCTTTGGACATTGAAAATGGCAATGTTtgggataactttcactgtttatgtgttggctgaaggtaaaaatatcagttgccaatatctttccctgaaacaagaggaaatttactcttaaatatgaatactttatgcatcgag i macFas5.chr13 C 0 C 0 s papAnu2.chr13 123101632 339 - 128036923 AGGTAGTGG-AAACTTCAGAATCATATAAACTTAGGCTGAAAATTCTGCTCCTTTACTCTCCCGCCCTGTGACTTCAGGTAAGCTTGTTGATcttttgaacttcagtttcttcttctgtaaattgGAGATATTAGGACCTGCCTTCtatattaaatacacaaataaactatAGAGATGCCTCTGAGATTAGCGGAAGCTCCTTTGGACATTGAAAAGGGCAATGTTTGGGATAACTTTCACTGTTTATGTGTTGGCTGAAGGTAAAAATATCAGTTGCCAATATCTTTCCCTGAAACAAGAGGAAATTTACTCTTAAATACGAATACTTTATGCATCGAG i papAnu2.chr13 C 0 C 0 s chlSab2.chr14 102042092 339 + 107702431 aggtagtgg-aaacttcagaatcatataaacttaggctgaaaattctgctcctttactctcccgccctgtgacttcaggtaagctttttcatcttttgaacttcagtttcttcttctgtaaattggagatattaggacctgccttctatattaaatacACAAATAAACCATAGAGATGCCTCTGAAATTAGCGGAAGCTCCTTTGGACATTGAAAATGGCAATGTTtgggagaactttcactgtttatgtgttgactgaaggtaaaaatatcagttgccaatatctttccctgaaacaagaggaaatttactcttaaataggaatactttatgcatcgag i chlSab2.chr14 C 0 C 0 e calJac3.chr14 5657478 13 - 108792865 I e canFam3.chr17 60744605 279 - 64289059 I a score=13237.000000 s hg38.chr1_KI270765v1_alt 13724 10 + 185285 CAGAGATAAA s panTro4.chr1_AACZ03149435_random 119035 10 + 173505 cagagataaa i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chr2a 107063131 10 + 113028656 CAGAGATAAA i ponAbe2.chr2a C 0 I 128 s nomLeu3.chr19 76394514 10 - 81552678 tggagataaa i nomLeu3.chr19 C 0 I 128 s macFas5.chr13 105393204 10 + 111193037 gggaggtgaa i macFas5.chr13 C 0 I 128 s papAnu2.chr13 123101971 10 - 128036923 GAGAGGTAAA i papAnu2.chr13 C 0 I 128 s chlSab2.chr14 102042431 10 + 107702431 gagaggtaaa i chlSab2.chr14 C 0 I 128 e calJac3.chr14 5657478 13 - 108792865 I e rheMac3.chr13 133313134 141 - 137160470 I e canFam3.chr17 60744605 279 - 64289059 I a score=5325.000000 s hg38.chr1_KI270765v1_alt 13734 3 + 185285 GAG s panTro4.chr1_AACZ03149435_random 119045 3 + 173505 gAG i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chr2a 107063269 3 + 113028656 GAG i ponAbe2.chr2a I 128 C 0 s nomLeu3.chr19 76394652 3 - 81552678 gag i nomLeu3.chr19 I 128 C 0 s macFas5.chr13 105393342 3 + 111193037 gaa i macFas5.chr13 I 128 C 0 s papAnu2.chr13 123102109 3 - 128036923 GAG i papAnu2.chr13 I 128 C 0 s chlSab2.chr14 102042569 3 + 107702431 gag i chlSab2.chr14 I 128 C 0 e calJac3.chr14 5657478 13 - 108792865 I e rheMac3.chr13 133313134 141 - 137160470 I e canFam3.chr17 60744605 279 - 64289059 I a score=664155.000000 s hg38.chr1_KI270765v1_alt 13737 282 + 185285 AATTTACATGTGTCTCTAGGTTccttggcttccaatagtatctttatttgtgcaagttttgtgttttgtaaaagctagaaggtcaataatcaaaatggcatttgattgcttattcattatttggtggtgcaaacatgtagaacattttctgtttctatttctggcaaacggaagggatggtaaaactagacgcaatattggacgaacattagctgcccaggactggcctcagtcattgaaactttgattAAGAACTCTGGGtatgatggataatttttgtgt s panTro4.chr1_AACZ03149435_random 119048 282 + 173505 AATTTACATGTGTCTCTAGGTTccttggcttccagtaatatctttatttgtgcaagttttgtgttttgtaaaagctagaaggtcaataatcaaaatggcatttgattgcttattcattatttggttgtgcaaacatgtagaacattttctgtttctatttctggcaaacggaagggatggtaaaactagacgcaatattggacgaacattagcggcccaggactggcctcagtcattgaaactttgattAAGAACTCTGGGtatgatggataatttttgtgt i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chr2a 107063272 282 + 113028656 AATTTGCATGTGTCTCTAGGTTCCTTGGCTTCCAGTAGTATCTTTATTTGTGCAAGTTTTGTGTTTTGTAAAAGCTAGAAGGTCAATAATCAAAATGGCATTTGATTGCTTATTCATTATTTGGTGGTGCAAACATGTAGAATATTTTCTGTTTCTATTTCTGGCAAACGGAAGGGATGGTAAAACTCGACACAATATTGGACGAACATTAGAGGCCCAGGACTGGCCTCAGTCATTGAAACTTTGATTAACAACTCTGGAtgtgatggataatttttgtgt i ponAbe2.chr2a C 0 C 0 s nomLeu3.chr19 76394655 282 - 81552678 aatttgcatgtgtctctaggttccttggcttccaggagtatctttatttgtgcaagttttgtgttttgtaaaagctagaaggtcaataatcaaaatggcatttgattacttattcattatttggtggtgcaaacatgcaaaacattttctgtctctatttctggcaaacggaagggatggtaaaactagacgcaatattggatgaacattagcagcccaggactggcctcagtcattgaaactttCATTAAGAGCTCTGGGtgtgatggatgatttttgtgt i nomLeu3.chr19 C 0 C 0 s rheMac3.chr13 133313275 281 - 137160470 aatttgcgtgtgtctctagattccttggcttccagtagtatccttagttgtg-aagttttgtgttttgtaaaagctagaaggtcaataatcaaaatggaatttgattacttattcatgatttggtggtgcaaacatgtaaaacattttctgtttctatttctggcaaacagaagggatggtaaaactagatgcaatattggatgaacattagcgacccgggattggcctcagtcatcaaaactctgattAAGAACTCTGGGtgtgatggataacttttgcgt i rheMac3.chr13 I 141 C 0 s macFas5.chr13 105393345 281 + 111193037 aatttgcatgtgtctctagattccttggcttccagtagtatccttagttgtg-aagttttgtgttttgtaaaagctagaaggtcaataatcaaaatggaatttgattacttattcatgatttggtggtgcaaacatgtaaaacattttctgtttctatttctggcaaacagaagggatggtaaaactagatgcaatattggatgaacattagcggcccgggattggcctcagtcatcaaaactctgattAAGAACTCTGGGtgtgatggataacttttgcat i macFas5.chr13 C 0 C 0 s papAnu2.chr13 123102112 281 - 128036923 AATTTCCGTGTGTCTCTAGGTTCCTGGGCTTCCAGTAGTATCCTTAGTTGTG-AagttttgtgttttgtaaaaGCTAGAAGGTCAATAATCAAAATGGCATTTGATTACTTATTCATGATTTGGTGGTGCAaacatgtaacacattttctgtttctatttctggCAAACAGAAGGGATGGTAAAACTAGATGCAATATTGGATGAACATTAGCGGCCCGGGATTGGCCTCAGTCATCAAAACTCTGATTAAGATCTCTGGGTGTGATGGATAACTTTTGCGt i papAnu2.chr13 C 0 M 50 s chlSab2.chr14 102042572 281 + 107702431 aatttgcgtgtgtctctaggttccttggcttccagtagtatccttcgttgtg-aagttttgtgttttgtaaaagctagaaggtcaataatcaaaatggaatttgattacttattcatgatttggtggtgcaaacatgtaaaacattttctgtttctatttctggcaaacagaagggatggtaaaactagatgcaatattggatgaacattagcggcccgggattggcctcagtcatcaaaactctgattaagaactctgggtgtgacggataacttttgcat i chlSab2.chr14 C 0 C 0 e calJac3.chr14 5657478 13 - 108792865 I e canFam3.chr17 60744605 279 - 64289059 I a score=133037.000000 s hg38.chr1_KI270765v1_alt 14019 74 + 185285 caaattcacttagacatgaggtgcccagactaaacatgggtcctggttatgcctgtgaagctgtttctgtatga s panTro4.chr1_AACZ03149435_random 119330 74 + 173505 caaattcacttagacatgaggtgcccagactaaacatgggtcctggttatgcctgtgaggctgtttctgtatga i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chr2a 107063554 74 + 113028656 ccaattcacttggacatgaggtgcccagactaaacatgggtcctggctgtgcctgtgaggctgtttctgtatga i ponAbe2.chr2a C 0 C 0 s nomLeu3.chr19 76394937 74 - 81552678 caaattcacttagacatgaggtgcccagactaaacgtgggtcctggctgtgcctgtgaggctgtttctgtatga i nomLeu3.chr19 C 0 C 0 s rheMac3.chr13 133313556 74 - 137160470 caaattcacttagacatgaggtgcccaaagtaaacatgggtcctggctgtacctgtgaggctgtttctgtagga i rheMac3.chr13 C 0 C 0 s macFas5.chr13 105393626 74 + 111193037 caaattcacttagacatgaggtgcccaaagtaaacatgggtcctggctgtacctgtgaggctgtttctgtagga i macFas5.chr13 C 0 C 0 s chlSab2.chr14 102042853 74 + 107702431 caaattcacttagacatgaggtgcccaaagtaaacatgggccctggctgtacctgtgaggctgtttctgtagga i chlSab2.chr14 C 0 C 0 e calJac3.chr14 5657478 13 - 108792865 I e canFam3.chr17 60744605 279 - 64289059 I e papAnu2.chr13 123102393 50 - 128036923 M a score=11392186.000000 s hg38.chr1_KI270765v1_alt 14093 5055 + 185285 gattagcgtttgaatcagcagactgagtaaagcaggtggccctccaccgtgtgagtgggcattatccgattcattgagacccgaatagaacagaaagcacaggaagggtgacttcaccctctgcctaactgcttgagctgacacatcagccccctgtgctgttcttgactgggtcttataccatcgatactttggttctctcaactacatcactgtctttcctgggtctccagctgcagatggcagattgtgagactttcagcccccataatcacatgagccaatttcttataataaactccctctctctccttctttccctctctctctgtctatatat--atatATACACACACACACACGtattaaatatatatg--tgtatatatatacacacacacacacacatgcgtgcacatgcacacaTATACTCTTGATTCTGTTTCTATAAAGAACACTGATTAATACAAAGGGCAATTTCAAGGATTTGATTATATatataaaatattaaatcacttatacatataacatC--------------------gtgtgtgtgtgtgtgtgtCTCcttttactgagttacctcctgatttttatgactttaggatgagaaccagggctatttttctaataacacagat-acctttcctgagaaaaatcatcctagccatccacaatggcaaagatcacatatg------------tgtatgcatgttcatgtgGTCACATATGTGTGCATGCATGTATACATGTCTGCATGACCACATGTGTGTATGCATGtgtattagtcagggttctctagagggacagaactgatagaatagatgtacatataaaagggggtttattaaagagaatcaactcacatgattacaagataaattcccatgataggccatctgcacgttgaggagcaaggaagccagtggtgcatcagtctgagtcccgaaacctcgaaagttgggaagtaaacaatgcagtcttcagtctgtggccaaaggcccgagagcccctgaaaaatcactggtgtaagtccaagagtctaaaagctgaagaacttggagtctgatgttcgagaccaggatacttccagcacaggagaaagatgaaagccagaagactcagcaagtctgttcttccatcttcttctgcctgctttattctagctgtgctgacagctgattagatggtgcccacccagatagaaggagggtctgcctctcccaatccactgacttaaatgttaatctcctttggcaacaccctcacagacatgcccaggaacaatattttgcatccttcaatccaatcaggttgacactcaacatcagctatcacaGCA----------------------------------------------TATATGTATATATGTTTGTTTAAAAACACAGCAAGATATCGGAATAAGCTTTGTACACTAGGACTATTTGCAAAGTTATTGTGTGAATATAAAGAACTAATATATATCTTAAAATTTTCTGTAGAGGTAGTTGTATAC------------------------------------------------------------------------------------------------ACAggctgtaaaagtcagcattt-ttcctcatgttattccagaacacataaaaaagcaacaaggaaaatggag---aaaaaaagaaccaaatatatccttagtgaaactagaaaaagttagaatccaaagatttcaaaacttatgtagggatgactaaatctagttggaatcaggcacaagccacatgggagtaaatgaagtatggaggtagtgaggccaatggctgataatctcagaaaacaccaac-aaaatgtactccctgaaaatttggg-agttcatttccatgttcaaaacttata--ccccttttttttaaccacaggagtgggaaccagggtacacagtctaccagaaaaagtcccctcctggacccagttttgttcaagggaggaacaagggagattcaaccacacagagaatcaccagaggagccatacttgcaggaagcagtctgtctctgtgacagcccagtaggaaagagccattctggtgtgaGGCCCAGAAGGTTGTCTTAATTCTCTCTCTGAACCTCTGTAG--------------TTATCTAGGAAAACCCAAACCATTTAGTAGTATATTACAAAAATAAAAGGAAATAGATACCCATTTATACAAAAATTATCTAAGCAAACATCTG-aaaagcaaaactcaagtattacagagaaaatgagaactatggaagaccgacaaatggattgaacacatacattactggaacatccaaagaagaaaccaaaagagacagaacaaatacttcaaaattataattcaagaacacttccatgcaatgcatgaagacttgaatctacctttcaaaagggcatatcagaagcaaggtatatccattcatgacaggcaaaaagtgaaccacatcttaatgaaggtattggactt-aaaaaaaataaggtatctattgggcagccagaaaaaaagaataagtcactcacaggagaaatgaagaaggctg---------tcctggctcccctagctgtactgaagctggatggtcatgagggaagaccaacaagattctcaatgccaaccaaggatttttatgtgcagccaagctagtcttactatgcagacatgatatattacaatttgttgcggtttttatcaagcaagaattcaggaa-aaaatattttcattaatgtttttgagagaacaaaaacatgggtatgtggagaaaaagggcaatacatttggttacagaaggaaggaaaacaataacaaccaattaaaggaagatgctttggtaaaatacagcaaaaaaaaaaag---------ttgtaagtattgaatgtattttactgtagactgaaaccaaatgtggattagggttacagaataggctggaaatgtcatatgccccaataacatagaaataataaactttaccatgtcaaaggtgaagaaagatagtgaaggtaaggaagcctcattaattacctcacttgttatgactacgatgcgaaggataaattttaaaggtggcaaatacagca----aaataaaagcctaCTTAGCAGTGCAATGGTAGAGTAAGGAGGATAACATTTACTATCCTCCTTACTTACAAAGGGCACCTGCCACTGTATGGTGGTGGGCTGGTATCAACTCACTCATACCCCTACCTGGAACCTAGGTTGTAATGTTAGTTCCACCAGTACTCTTCAGATCAGGCAGCATGATAAAGGGAAGGAAGGCATTAATCAGCACAAGTAAACAATAGCTGATATAGGTTCTGCCTCTGCTGTTGGTCTATGTTCTATGTTGATAGTCAGCTCCTCTTTTTCATT-TTTTCAAATCACCTATCAATGCTCCCTTTACCTTCTACCAACACCTTTCCCTATCAGAAATTTTAAACTAGTAGTATGACCAAAATTTTCATTCCAATAGACTGCAAATCCTTTACAGCTACAGTTTCCCACTAACCATTATCTTTGGACACTAGTGAATTAAGGAGCTCCAGTAAATTGCCCATGTTCTAGATGTAATCTTCTTTGCTCCCATTGTATACAAACACTCCAACATCCTTTCGGCACTGTAAAATGCCAGTTCAAAATAGGAATTCTCTATCTCGtaacatgaaaagcccaacatgattatagaacagtctcaggttctcattgaacgaaaccaggactatgtttcttgatgcaaaattattcccttggccctaggacttcacaacacactgagtataaggaattaagaatgaaaaatacagatcccatcagtgtaagactgagggaggtcataccgaatttcacccttttgttttctgaccgtgtgttctagtattctggctttgtggaaaaGGtggagtgaacttacaattcagttatctaagtcaggtcacttttgacggtgaaaggggttgttgttaataattatgttagaaattattattattatgtcctgggaaaactggagcacatggtcacACAAGAGACAGAGTCATACATTGGTCATTGCTCCACAGTCATTCTGCATGCTGGAGAGGAGTGCTCCAGGCCTGCAGCACGCCATCTCTCAGCTCGCACTGTGTGAGAACCTCCAGGAAGCCACCTCCCCTTCAGTAAAGCCACTGGGTATCTGCAAGACAGGCTACCAGCAGCAAAGGTGGGCAAAGAGGGCACTGGTCAATGCCCGAACTGTGGGAtgtcttaatctgtttgttctgcattaacagaacatggacatggaggctatgtagtctattgagaaaa-------acatatttctcacagttgt----------gggtccaagatcaaggtgccagcagatctgggggctggagagggttgctttctgcttccaagatggcgactcttgctgtgtcctcacattgcagaaggaatataaaagcaaacaggatctagctagtcccctagagtgctgttataagggtatatgatcacctcctcaaggcctcacatcttaatcttgtcacactgaagatgaagtttcaacatgaattttggagggacacaaatattgaaaccatagcaGGAGGCAGGGAGTGTTTTCATGGAGAGAATACTGTTGCCATCACTGCAGTTCCCACTgcagaaaaggagtgggagaaaattacccccaactctctgt-------------------------cttctgagcatcccatcaccttacattgatctccgtcagccaaatccacatggaagttcaagcccaggaaagccagagtcatgct---------------------------------------------------------------atttatagagatat----------------------------------------------------tggcagttttggggtgcataaagaggggtagagaataaagaggggttgaaagacaagtgaagataagccatcacTGATATCTGTCAGATACTGTGCAGCAGGGGTTTGGGGGTAACTGGCTGGTTTTCGTCAATGCTGTCTGTGAACACAGCCTTGGGAATGGAGAGACAGGGCTTGCTGGCTGGATTACAAGTGGGGAGCATCAGGGCAGGTAATTTGCTCCATGTGTAGCTGGCAGACTACCATGTGGTTTTAGAATTTGGAAACTTTAGTAACTTTGCAAAAACTGC-GACACAAAATTCGAAAACTATCCTCCATCATATTTTAAAATTAAAGAACACTATCATTTTAAAC--GTGTTCTAGGAACACATCTCCTTCCTCATGGTACTGGCCTTTTCTATAAATATCTCAAGCTCCGTTAAGCTTTTCTTAAT s panTro4.chr1_AACZ03149435_random 119404 5041 + 173505 gattagcgtttgaatcagcagactgagtaaagcaggtggccctccaccgtgtgagtggacattatccgattcactgagacccgaatagaacagaaagcacaggaagggtgacttcaccctctgcctaactgcttgagctgacacatcagccccctgtgctgttcttgactgggtcttataccatcgatactttggttctctcaactacatcactgcctttcctgggtctccagctgcagatggcagatcatgagactttcagcccccataatcacatgagccaatttcttataataaactccctgtctctccttctttccctctctctCTGTCTatatataaatatacacacacacacacacgtattaaatatatatg--tgtatatat------acacacacacacacgcgtgcacacgcacacacatactcttgattctgtttctataaagaaccctgattaatacaAAGGGCAATTTCAAGGATTTGattatatatataaaatattaaatCACTTATACATATAACATC----------------------------GTGTGTGTGTCTCcttttactgagttacctcctgatttttatgactttaggatgagaaccagggctatttttctaataacacagataacctttactgagaaaaatcatcctagccatccacaatggcaaagatcacatatg------------tgtatgcatgttcatgtgGTcacatatgtgtgcatgcatgtatacatgtctgcatgaccacatgtgtgtatgcatgtgtatt----agggttctctagagggacagaactgatagaatagatgtacatataaaagggggtttattaaagagaatcaactcacatgattacaagataaattcccatgataggccatctgcacgttgaggagcaaggaagccagtggtgcatcagtccgagtcccaaaacctcaaaagttgggaagtaaacaatgcagtcttcagtctgtggccaaaggctcgagagcccctgaaaaatcactggtgtaagtccaagagcctaaaaactgaagaacttggagtctgatgttcgagaccaggatgcttccagcacaggagaaagatgaaagccagaagactcagcaagtctgttcttccatcttcttctgcctgctttattctagctgtgctgacagctgattagatggtgcccacccagatagaaggagggtctgcctctcccaatccactgacttaaatgttaatctcctttggcaacaccctcacagacatgcccaggaacagtactttgcatccttcaatccaatcaggttgacactcaacatcaactatcacaGCA----------------------------------------------TATATGTATATATGTTTGTTTAAAAACACAGCAAGATATCGGAATAAGCTTTGTACACTAGGACTATTTGCAAAGTTATTGTGTGAATATAAAGAACTAATATATATCTTAAAATTTTCTGTAGAGGTAGTTGTATAC------------------------------------------------------------------------------------------------ACAggctgtaaaagtcagcattt-ttcctcatattattccagaacacataaaaaagcaacaaggaaaatggag---aaaaaaagaaccaaatatatccttagtgaaactagaaaaagttagaatccaaagatttcaaaacatatgtagagatgactaaatctagttggaatcaggcacaagccacatgggagtaaatgaagtatggaggtagtgaggccaatggctgataatctcagaaaacaccaac-aaaatgtactccctgaaaatttggg-agttcacttccatgttcaaaacttata--ccccttttttttaaccacaggagtgggaaccagggtacacagtctaccagaaaaagtcccctcctggacccagttttgttcaagggaggaacaagggagattcaaccacacagagaatcaccagaggagccatacttgcaggaagcggtctgtctctgtgacagcccagtaggaaagagccattctggtgtgaTGCCCAGAAGGTTGTCTTAATTCTCTCTCTGAACCTCCGTAG--------------TTATCTAGGAAAACCCAAACCATTTAGTAGTATATTACAAAAATAAAAGGAAATAGATACCCATTTATACAAAAATTATCTAAGCAAACATCTg-aaaagcaaaactcaagtattacagagaaaatgagaactatggaagaccgacaaatggattgaacacatacattactggaacatccaaagaagaaaccaaaagagacagaacgaatacttcagaattctaattcaagaacacttctgtgcaatgcatgaagacttgaatctacctttcaaaagggcacatcagaagcaaggtatatccattcatgacaggcaaaaagtgaaccacatcttaatgaaggtattggacttaaaaaaaaataaggtatctattgggcagccagaaaaaaagaataagtcactcacaggagaaatgaagaaggctg---------tcctggctcccctagctgtactgaagctggatggtcatgagggaagaccaacaagattctcaatgccaaccaaggatttttatgtgcagccaagctagtcttactatgtagacatgatatattacaatttgttgcggtttttatcaagcaagaattcaggaa-aaaatattttcattaatgtttttgagagaacaaaaacatgggtatgtggagaaaaagggcaatacatttggttacagaaggaaggaaaacaataacaaccaattaaaggaagatgctttggtaaaatacagccaaaaaaaaaag---------ttgtaagtattgaatgtattttactgtagactgaaaccaaatgtggattagggttacagaataggctggaaatgtcatatgccccaataacatagaaatagtagactttaccatgtcaaaggtgaagaaagatagtgaaggtaaggaagcctcattaattacctcacttgttatgactacgatgcgaaggataaattttaaaggtggaaaatatagca----aaataaaagcctaCTTAGCAGTGCAATGGTAGAGTAAGGAGGATAACATTTACTATCCTCCTTACTTACAAAGGGCACCTGCCACTGTATGGTGGTGGGCTGGTATCAACTCAGTCATACCCCTACCTGGAACCTAGGTTGTAATGTTAGTTCCACCAGTACTCTTCAGATCAGGCAGCATGATAAAGGGAAGGAAGGCATTAATCAGCACAAGTAAACAATAGTTGATATAGGTTCTGCCTCTGCTGTTGGTCTATGTTCTATGTTGATAGTCAGCTCCTCTTTTTCATT-TTTTCAAATCACCTATCAATGCTCCCTTTACCTTCTACCAACACCTTTCCCTATCAGAAATTTTAAACTAGTAGTATGACCAAAATTTTCATTCCAATAGACTGCAAATCCTTTACAGCTACAGTTTCCCACTAACCATTATCTTTGGACACTAGTGAATTAAGGAGCCCCAGTAAATTGCCCATGTTCTAGATGCAATCTTCTTTGCTCCCATTGTATACAAACACTCCAACATCCTTTCGGCACTGTAAAATGCCAGTTCAAAATAGGAATTCTCTATCTCGtaacatgaaaagcccaacatgattatagaacagtctcaggttctcattgaacgaaaccaggactatgtttcttgatgcaaaattcttcccttggccctaggacttcacaacacactgagtataaggaattaagaatgaaaaatacagatcccatcagtgtaagactgagggaggtcatacccaatttcacccttttgttttctgaccatgtgttctagtattctggctttgtggaaaaggtggagtgaacttacaattcagttatctaagtcaggtcacttttgacggtgaaaggggttgttgttaataattatgttagaaattattattattatgtcctgggaaaactggagcacatggtcacacaagagacagagtcatacattggtcattgctccacagtcattctgcatgctggagaggagtgctccaggcctgcagcatgccatctctcagctcgcactgtgtgagaaccttcaggaagccacctccccttctgtcaagccaCTGGGTATCTGCAAGACAGGCTACCAGCAGCAAAGGTGGGCAAAGAGGGCACTGGTCAATGCCCGAATTGTGGGAtgtcttaatctgtttgttctgcattaacagaacatggacatggaggctatgtagtctattgaaaaaa-------acatatttctcacagttgt----------gggtccaagatcaaggtgccagcagatctgggggctggagagggttgctttctgcttccaagatggcgactcttgctgtgtcctcacattgcagaaggaatataaaagcaaacaggatctagctagtcccctagagtgctgttataagggtatataatcacctcctcaaggcctcacatcttaatcctgtcacactgaggatgaagtttcaacatgaattttggagggacacaaatattgaaaccatagcaGGAGGCAGGGAGTGTTTTCGTGGAGAGAATACTGTTGCCATCACTGCAGTTCCCACTgcagaaaaggagtgggagaaaattactcccaactctctgt-------------------------cttctgagcatcccatcaccttacattgatctctgtcagccaaatccacatggaagttcaagcccaggaaagccagagtcatgct---------------------------------------------------------------atttatagagatat----------------------------------------------------tggcagttttggggtgcataaagaggggtagagaataaagaggggttgaaagacaagtgaagataagccatcacTGATATCTGTCAGATACTGTGCAGCAGGGGTTTGGGGGGAACTGGCTGGTTTTGGTCAATGCTGTCTGTGAACACAGCCTTGGGAATGGAGAGACAGGGCTTGCTGGCTGGATTACAAGTGGGGAGCATCAGGGCAGGTTATTTGCTCCATGTGTAGCTGGCAGACTACCATGTGGTTTTAGAATTTGGAAACTTCAGTAACTTTGCAAAAACTGC-GACACAAAATTTGAAAACTATCCTCCATCATATTTTAAAATTAAAGAACACTATCATTTTAAAC--GTGTTCTAGGAACACATCTCCTTCCTCATGGTACTGGCCTTTTCTATAAATATCTCAAGCTCCATTAAGCTTTTCTTAAT i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chr2a 107063628 5127 + 113028656 gattagcgtttgaatcagcagactgagtaaagcaggtggccctccaccgtgtgagtgggcattatctgattcattgagacccgaatagaacagaaagcacaggaagggtgacttcaccctctgcctcactgcttgagctgacacatcagccccctgtgctgttcttgactgggtcttatactatcgacac--tggttctcgcaactacatcactgcctttcctgggtctccagctgcagatggcagatcatgagactttcagcccccataatcacatgagccaatttctaataataaactccctctctctccttctctccctctctctctctctatatat--atatat----acacacacacgtattaaatatatatg--ggtatatatatacacacacacacacatgcgcgcgcacacacacacacatactcttgattctgtttctacaaagaaccctgactaatacaAAGGGCAATTTCAAGGATTTGA-TAGATATATAAAATATTAAATCCCTTATACATATAACATCACg------------tgtgtgtgtatgtgtgtgtgtgtCTCCTTTCACTGAATTACCTCCTGATTTTTATGTCTTTAGGATGAGAACCAGGGCTATTTTTCTAATAACACAGAT-ACCTTTCCTGAAAACAATCATCCTAGCCATCCACAATGGCAAAGATCACatatg------------tgtatgcatgtttgtgtggtcacatatgtgtgcatgcatgtatacatgtctgcatgaccacatatgtgtatgcatgtgtattagtca-ggttctctagagggacagaactgatagaatagatgtacatataaaagggggtttattaaagagagtcaactcacatgattagaagataaattcccacgataggccatctgcatgttgaggagcaaggaagccagtggtggatcagtccgagtcccaaaacctcaaaagttgggaagtcaacgatgcagtcttcagtctgcggccaaaggcccgagagcccctgaaaaatcactggtgtaagtccaagagtctaaaagctgaagaacttggagtctgatgttcgagaccaggatgcttccagcacaggagaaagaagaaagccagaagactcagcaagtctgttcttccatcttcttctgcctgctttattctagctgtgctgacagctgattagatggtgcccacccagatagaagtagggtctgcctctcccagtccactgacttaaatgttaatctcctttggcaacaccctcacagacacgcccaggaacaatactttgcatccttcaatccaatcagtttgacactcaacatcaactatcacaGCA----------------------------------------------TATATGTATATATGTTTGTTTAAAAACACAGCAAGATATCGGAATAAGCTTTGTACACTAGGACTATTTGCAAAGTTATTGTGTGAATATAAAGAACTAATATATATCTTAAAATTTTCTGTAGAGGTAGTTGTATAC------------------------------------------------------------------------------------------------ACAggctgtaaaagtcagcattt-ttcctcatattattccagaacacataaaaaagcaacaaggaaaatggag---aaaaaaagaaccaaatatatctttagtgaaactagaaacagttagaatccaaagacttcaaaacgtatgtagaggtgactaaatctagttggaatcaggcacaagctacatgggagtaaatgaagcatggaggtagtgaggccaatggctgataatctcagaaaacaccaac-aaaatgtactccctgaaaagttgggaagttcacttccatgttcaaaacctata--ctccttttttttaaccacaggattgggaaccagggtacacggtctaccagaaaaagtcccctcctggacccagttttgttcaagggaggaacaagggagattcaaccacacagagaaccaccagaggagccatacttgcaggaagcagtctgtctctgtgacagcccagtaggcaagagccattgtggtgtgaGGCCCAGAAGGTTGTCTTAATTCTCTCTATGAACCTCTGTAA--------------TTATCTAGGAAAACCCAAACCATTTAGTAATATATTACAAAAATAAAAGGAAATAGATACCCATTTATACAAAAATTATCTAAGCAAACATTTG-AAAAGCAAAACTCaagtattacagagaaaatgagaattatggaagacagacgaacggattgaatacatacattactggaacatccaaagaagaaaccaaaagagacagaaccaatacttcaaaattataattcaagaacacttccgtgcaatgcatgaagacttgaatctacctttcaaaagggcacatcagaagcaaggaatatccattcatgacaggcaaaaagtgaaccacatcttaataaaggtattggactt-taaaaaaataaagtatctattgggcagccagaaaaaaag---aagtcacacacaggagaaatgaagaaggctgtcctgatcctcctggctcccctagctgtagtgaagctggatggtaatgagggaagaccaacaagattctcaatgccagccaaggatttttatgtgcagccaagctagtcttACTATGTAGACAAGATACATTACAATTTGTTGCAGTTCTTATCAAGCAAGAATTCAGGAAGAAAATATTTTCATTAATGTTTTTGAGAGAAC-AAAACATGGGTATGTGGAGACAAAGGGCAATACATTTGGTTACAGAAGGAAGGAAAACAATAACAACCAATTAAAGGAAGGTGCTTTGGTAAAATACAGCAAAAAAAAAAAAAAAAAAAGCTTgtgagtattgaatgtattttactgtagactaaaaccaaatgtggattagggttacagaataggctggaaatgtcatatgccccaataacatagaaataatacactttaaaatgtcaaaggtgaagaaagatagtgaaggtaaggaagtctcattaattacctcacttgttatgactacgatgcaaaggatgaattttaaaggtggcaaatctagcaaaagaaataaaAGCCTACTTAGCAGTGCAATGGTAAAGTAAGGAGGATAACATTTACTATCCTCCTTACTTACAAAGGGCACCAGCCACTGTATGGTGGTGGGGTGGTATCAACTCAGTCATACCCCTACCTGGAACCTAGGTTGTAATGTTAGTTCCACCAGTACTCTTCAGATCAGACAGCATGATAAAGGGAAGGAAGGCATTAATCAGCACAAGCAAACAATAGCTGATATGGTTTCTGCCTCTGCTGTTGGTCTATGTTCTGTGTTGATAGTCAGCTCCTCTTTTATATT-TTTTCAAATCACCTATCAGTGCTCCTTTTATCTTCTACCAACACCTTGCCCTATCAGAAATTTTAAACTGGTAGTATGACCAAAATGTTCATTCCAATAGAATGCAAATCCTTTACAGCTACAGTTTCCCACTAGCCATTATCTTTGGACACTAGTGAATTAAGGAGCCCCAGTAAATTGCCCATGTTCTAAATGTTATCTTCTTTGCTCCCATTGTATACAAACACTCCAACATCCTTTGGGCACTGTAAAATGACAATTCAAAGTAGGAATTCTCTATCTCATAAcatgaaaagcccaacatgattatagaacagtctcagattcttattgaatgaaaccaggactatgtttcttgatggaaaattcttcccttggccctaggacttcacaacacactgaggataaggaagtaagaatgaaaaatacagatcccatcagtgtgagactgagggaggtcatacccaatttcaccgttttgttttctgaccatgtgttctggtattctggctttgtggaaaaggtagagtgaacttacaattcagttatccaagtcaggtcacttttgacggtgaaaggagttgttgttaataattatgttagaaattattatttttatgtcctgggaaaactggagcacatggtcacacaagagacagggtcatacattggtcattgctccacagccattctgcatgctggagaggagtgctccaggcctgcagcgtgccatctctcagctcgcactgtgtgagaacctccaagaagccacttccccttctgtaaagccaCTGGGTATCTGCAAGGCAGGCTACCAGCAGCAAAGGTGGGCAAAGAGGGCACTGGCCAATGCCTGAATTGTGGGAtgtcttaatctgtttgttcttcattaacagaacatggacatggaggctatgaaatctattgaaaaaa-------acatatttctcacagttgt----------gggtccaagatcaaggtgccagcagatttggggtctggtgagggttgctttctgcttccaagatggcgactcttgctgggtcctcacattgcagaaggaatataaaagcaaacaggatcaagctagtcctctagagtggtgctataagggtatataatcacctcctcaaggcctcacatcttaatcctgtcacactgaggatgaagtttcaacatgaattttggagggacacaaatattgaaaccatagcaGGAGGCAGGGAGTGTTTTCGTGGAGAGAATACTATTGCCATCACTGCA----CTAAggcagaaaaggagtgggagaaaattacccccaactctctgt-------------------------cctcggggcatcccatcaccttacattgatctccatcagccaaacccacgtggaagttcaagcccaggaaagccagagtcatgctatttatagagatattggcagttttgaggtgcatagagagg--------ggtCCAAGTCATGCCATTTATAGAGATAT----------------------------------------------------TGGCAGTTTTGGGGTGCATAAAGAGGGGTAGAGAATAAAGAGGGGTAGAAAGATAAGTGAAGATAAGCCATCACTTATATCTGTCAGATACTGTGCAGCAGGGGTTTGAGGGGAGCTGGCTGGTTTTGGTCAGTGCTGTCTGTGAACACAGCCTTGGGAATGGAGAGACAGGGCTTGCTGGCTGGATTACAAGTGGGGAGCATCAGGGCAGGTTATTTGCTCCAAGTGTAGTGGGCAGACTACCTTGTGGTTTTAGAATTTGGAAACTTCAGTAACTTTGCAAAAACTGCAGACACAAAATTCAAAAACTATCCTCCATCATATTTTAAAATTAAAGAACACTGTCATTTTAAAT--GTGTTTTAGGAACACATCTCCTTCCTCATGGTACTTGCCTTTTGTATAAATATCTCAAGCTCAGTTAAGCTTTTCTTAAT i ponAbe2.chr2a C 0 C 0 s nomLeu3.chr19 76395011 5019 - 81552678 gatcagcatttgaatcagcagactgagtaaagcaggtggccatccaccgtgtgagtgggcatcatccgattcattgagacccgaatagaacagaaagcagagggagggtgacttcaccctctgcctcactgcttgagctgacacatcagctccctgtgctgttcttgcctgggtctcatatcatcgaccctttggttctcgcaactacatcactgcctttcctgggtctccagctgcagacggcagatcacgagactttcagcccccgtaatcacataagccgatttcttataataaactccctctctctccttctctccctctctctatgtatatatat--atATAC----ACACACACACATATTAAATATATATG--TGTATATAT------ACACACacacat------------------aaatactcttgattctgtttctattaagaaccctgattaatacaAAGGGCAATTTCAAGGATTTGATTACATATATAAAATATTAAATCCCTTATACATATAACATCgtg------------tgtgtgtgtgtgtgtgtgtgtgtCTCctttcactgagttacctcctgatttttatgactttaggatgagaatcagagctatttttctaataacacagac-acctttcctgagaaaaatcatcctaggcatccacaatggcaaagatcacatat-------------tgtatgcatgtttgtatgGTCACATATGTGTGCATGCATGTATACATGTCTGCATGACCACATATGTGTATGCATGtgtattagtcagggttctctagagtgacagaactgatagactagatgtacacattaaagggagtttattaaggagaatcaactcacatgattacaagataaattcccacgacaggccatctgcacgttgaggaggaaggaagccaatggtggatcagtccgagtcccaaaacctcaacatttgggaagtcaacaatgcagtcttcagtctgtggccaaaggcccgagagcccctgcaaaatcactggtgtaagtccaagagtctaaaagctgaagaacttggagtctgatgttcgagaccaggatgcttccagcacaggagaaagatgaaggccagaagactcagcaagtctgttcttccatcttcttctgcctgctttattctagctgtgctgacagctgatgagatggtgcccacccagatagaaggagggtctgcctctcccagtccacggactcaaatgttaatctcctttggcaacaccctcacagacacacccaggaacaatactttgcatccttcaatccaatcaggttgacactcaatattaactatcacaGCA----------------------------------------------TATATGTATATATGTTTGTTTAAAAACACAGCAAGATATCAGAATAAGCTTTGTACACTGGGACTATTTGCAAAGTTATTGTGTGAATATAAAGAACTAATATATATCTTAAAATTTTCTGTAGAGATAGTTGTATAC------------------------------------------------------------------------------------------------ACAggctgtaaaagtcagcattc-ttccgcatattattccagaacacataaaaaagcaacaaggaaaatggaga--aaaaaaagaaccaaatatatccttagtgaaactagaaacagttagaatccaaagatttcaaaacgtacgtagagatgactaaacctagttggaatcaggcacaagccacacgggagtaaacgaagtacagaggtggtgaggccaatggctgataatctcagaaaacaccaac-aaaatgcactccctgaaaatttgggaagttcacttccatgttcaaaacctatatcccccttttttttaaccacaggagtgggaaccagggtacacagcctatcagaaaaagtcccctcttggccccaattttgttcaagggtggaacaaggaagattcaaccacacagatactcaccagatgagccatacttggaggaagcagtctgtctctgtgacagcccagcaggaaagagccattatggtgtgaGGCCTAGAAGGTTGTCTTAATTCTCTCTCTGAACCTCTGTAG--------------TTATCTAGG-AAACCCAAACCATTTAGTAATATATTACAAAAATAAAAGGAAATAGTTACCCATTTATACAAAAGTTATCTAAGCAAACATTTG-AAAAGCAAAACTCaagtattacagagaaaatgagaattacggaagacagacaaatggattgaacacatacataactggaacatccaaagaagaaaccaaaaaagacagaaccaatacttcaaaattataattcaagaacactgctgtgcaaagcatgaagacttgaatctacctttcaaaagggcacatcagaagcaaggaatatccattcatgacaggcaaagagtgacccacatcttaataaagg----------------------------tattgagcagccagaaaaaaagaataagtcacacacaggagaaatgaagaaggctgtcctgatcctcctggctcccctagctgtagtgaagctggatggtaatgagggaagaccaacaagattctcaatgccagccaaggatttttatgtgcagccaagctagtcttactatgtagacaagatatattacaatttgttgcagtttttatcaagcaagaattcaggaa-aaaatattttcattaatgtttttgagagaacaaaaacatgagtatgtggagaaaaagggcaatacatttggttacagaaggaaggaaaacaataacaaccaattaaaggaagatgctttggtaaaatacagcaaaaaaaaaaaag--------ttgtgagtattgaatgcattttgctgtagactaaaaccaaatgtggattagggttacagaatagactggaaatgtcatatgccccaataatgtagaaataatacactttacaatgtcaaaggtgaagaaagatagtgaaggtaaggaagcctcattaattacctcatttgttatgactacgacgcaaaggataaattttaaaggtagcaaatctagcaaaagaaataaaAGCCTACTTAGCAGTGCAATAGTAAAGTAAGGATGATAACATTTACTATCCTCCTTACTTACAAAGGGCACCTGCCACTGTATGGTGGTGGGGTGGTATCAACTCAGTCATACCCCTAGCTGGAACCTA-GTTGTAATGTTAGTTCCACCAGTACTCTTCAGATCAGGCAGCATGATAAAGGGAAGGAAGGCATTAATCAGCACAAGCAAACAATAGCTGATATGGTTTCTGCCTCTGCTTTTGGTCTATGTTCTATGTTGATAGTCAGCGCCTCTTTTTAATT-TTTTCAAATCACCTATCAATGATCCCTTTACCTTCTACCAACACCTTGCCCTATCAGAAATTTTAAACTGGTAGTATGACCAAAATTTTCATTCCAATAGGATGCAAATCCTGTACAGCTACAGTTTCCCACTAACAATTATCTTTGGACACTAGTGAATTAAGGAGCCCCAGTAAATTGCCCACGTTCTAGATGTAATCTTCTTTGCTCCCATTGTATACAAACACTCCAACATCCTTTGGGCACTGTAAAATACCAGTTCAAAACAGGAATTCTCTATCTGGTAACATGAAAAGCCCAACATGATTACAGAACAGTCTCAGATTCTCATTGAATCAAACCCGGACCATGTTTCTTGATGCAAAATTCTTCCCTTGGCCCTAGGACTTCACAACACACTGAGTATAAGGAAGTAAGAGTGAAAAATACAGATCCCATCAGTGTGAGACTGAGGGAGGTCATACCCAATTTCACCCTTTTGTTTTCTGACCATGTGTTATGGTATTCTGGCTTTGTGGAAAAGGtagagtgaaattacaatccagttatccaagtcaggtcacttctgatggtgaaaagggttgttgttaataattatgttagaaATTATTATTATTATGCCCTGGGAAAATTGAAGCACATGGTCACACAAGAGACAGGGTCATACATTGGTCATTGCTCCACAGCCATTCTGCATGCTGGAGAGGATTGCTTCAGGCCTGCGGCGTGCCCTCTCTCAGCTCGCACTGTGTGAGAACCTCCAAGAAGCCACCTCCCCTTCTGTAAAGCCACTGGGTATCTGCAAGACAGGCTACCAGCAGCAAAGGTGGGCAAAGAGGGCAATGGCCAATGCCCAAAC-ATGGGAtgtcttaatctgtttgttctgcattaaaataacacggacatggaggctgtgtaatctactgaaaaaa-------acatatttctcacagttgt----------gggtcctagttcaaggtgccagcagatttgggggctagagagggttgctttctgcttccaagatggcaactcttgctgtgtcctcacattgcagaaggaatataaaagtaaataggatctagatagtcccctagagtgctgttacaagggtatataatcaccttctcaaggcctcacatcttaatcctgtcacactgaggatgaagtttcaacatgcattttggagggacacaaatattgaaaccatagcaGGAGGCAGGGAGTGTTTTCATGGAGAGAACACTGTTGCCATTACTGCA----CTAAggcagacaaagagtgggagaaaattacccccaactctctgt-------------------------cctctgggcatcccatcaccttacattgatctccgtcagccaaacccacatggaagttcaagcctaagaaagtcagagtcatgct---------------------------------------------------------------atttatagagatat----------------------------------------------------tggcagttttggggtgcataaagagggatagagaataaagaggggTTGAAAGATAAGTGAAGATAAACCATCACTGATATCTGTCAGATACTGTGCAGCAGGGGTTTGGGGAGAACTGGCTGGTTTTGGTCGGTGCTGTCTGTGAACACAGCCTTGGGAATGGAGAGACAGGGCTTGCTGGCTGGATTGCAAGTGGGGAGCATCAGGGCAGGTTATTTGCTCCACGAGTAGTTGGCAGACTACCATGTGGTTTTAGAGTTTGGAAACTTCAGTAACTTTGCAAAAACTGCGGACACAAAATTCAAAAACTATCCTCCATCATATTTTAAAATTAAAGAACACTATCATTTTAAAT--GTGCTTTAGGAACACATCTCCTTCCTCATGGTACTTGCCTTTTCTATAAATATCTCAAGCTCAGTTAAGCTTTTCTTAAT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr13 133313630 5207 - 137160470 gattagcatttgaatcagcagactgagcaaagcaggtggccctccaccgtgtgagtgggcgtcatccgattcattgagaccagaatagaacagaaagcagagagagggtgactccaccctctgcctcactgcttgagctgacacatcagccccctgtgctgttcttggctgggtctttcaccaccgaccctttggttttcgcagctacatcactgcctttcctgggtctccagctgcagatggcagatcacgagactttcagcccccataatcatgagagccaatttcttataataataaccctctccctctctctc-------------------------------------------------------------------tatat------atatatacacacacacacacgcacccacacacatactattgattctgtttctataaagaaccctgattaatacaAAGGGCAATTTCAAGGATTTGattatatatataaaatattaaatCCCTTATGCATATAGCATCATA--tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtCTCctttcactgagttacctcctgatttttatgactttaggatgagaaccagggctatttttctaataacacagat-acctttcctgagaaaaatcatcctaggcatccacaatggcaaagatcacatatgtgtacacatgtatgtatacATGTTTGTGTGGTcacatatgtgtgcatgcatgtatacatgtctgcatgaccacatatgtgtatgcatgtgtatt----agagttctctagagggacagaactaatagaatagatgtacatataaaagggagtttactcaggagaatcaattcacatgattacaagataaagtcccacgataggccatctgcacactgaggagcaacaaagccagta--ggatcagtccaagtcccaaaacctcagaagctgggaagtcaacaatgcagtctttagtctgtggtcaaaggcccaagagcccctggaaagtcgctggtggaagtccaagtgtccaaaagctgaagaacttggagtctgatgtttgataccaggatgcttccagcacaggaaaaagatgaaggccggaagactcagcaagtctgttcttccatcttcttctgcctgctttgtcctagccatgctggaggatgattagatggtgcccacccagacagagggtgggtctgcctcccccagcccacggacttaaatgttaatctcccttggcaacaccctcacagacacacacaggatcaatactttgcatccttcaatccaatcaagttgacactcaatattaactatcccaGCA----------------------------TGTGTGTGTGTGTGtatatatatatatatatatttgtataAAAACACAGCAAGATATCAGAATAAGCTTTGTACACTAGGACTATTTGCAAAGTTATTGTGTGAATATAAAGAACTAATATATATCTTAAAATTTTCTGTAGAGATAGTTGTATACACAGGCTGTAAAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAggctgtaaaagtcagcattttttcctcatattattccagaacacataaaaaagcaacaaggaaaatggggagagggggaagaaccaaatatatcctcagtgaagctagaaacagttagaatccgaagatttcaaaatgtatgtagagatgactaaatctagttggaatcaggcacaagccacactggagtaaatgaagtatggaggtggtgaggccaatggccaataatctcagaaaacaccaacaaaaaggtactacctgaaaatgtgggaaattcacctccatgttcaaaacctata-cccccttttttctaaccacaggagtaggaacaagtgtacataggctaccag--aaagtcccctcctggacccaattgtgttcaagggaggaacaagggagattcaaccacacagagaatcaccagaggagccatagttgcaggaagcagtgtgtccctgtgaccgccaagtaggcaagagctattgtggtgtgaGACCCAGAAGGTTGTCTTGATTCTGTCTCTGAAACTCTGTAGTTTCTATAAAGAGCTTATCGAGGAAAACCCAAACCATTTAGTAATATATTACAAAAATTAAAGGAAATAGATACCCATTTATACAAAAATTATCTAAAGAAATATTTG-AAAAGCAAAACTCaagtattagagagacaatgagaattatggaagactgacaaatgaactgaacacatacataactggaacatccaaaaaagaaaccaaaagagacagaaccaatactgcaaaattataattcaa-aacacttctgtgcaatgcatgaagacttgaatctacctttcaaaagggcacatcagaagcaaggcatatacattcatgataggcaaagagtgaaccacatctttaaaaaagtattagactt---aaaaaataaaatatctactgggcagccagaaaaacagagtaagtcactcatgggagaaatgaagaaagcggttctgatcctcctggctcccccagcagtagtgacgctggatggtaatgagggaagaccagcaagattctcaatgctc-ccaaggatttttatgtgcagccaaggtagtctcactatgtaggcgtgatatattacaatttgttgcagtttttatcaagcaggaattcaggaa-ataatattttcattagtgtttttgagagaacaaaaacatggctatgtgtagaaaaagggcaacacatttggttacagaaggaaggaaaacgataacaaccgattaaaggaagatgccttggcagaatacagcaaaaagaaag-----------ttgtgagtattgaatgcattttgctgtagactgaaaccaaatgtggatgagggttac-gaataggctggaaatgtcatttgccccaataatgtagaaataatacattttacaatgtcaaagatgaagaaagatagtgaaggtaagaaagcttcattaattacctcacttg---tgactatgatgtgaaggataaattttaaaggtggcaaatctagcaaaagaaataaaAGCCTACTTAGCAGTGCAATGGTAAAGTAAGGAGGATAACTTTTACTATCCTCCTTACTTACAAAGGGCACCTGCCACTGTATGGTGATGGGGTGGTATCAACTCAGTCATACCCCTACTTGGAACCTAGGTTGTAATGTTAGTTCCACCAGTACTCTTCGGATCAAGCAGCATGATAAAGGGAGGGAAGACGTTAATCAGCACAAGCATACAATCGCTGATATGGTTTCTCTCTCTGCTGTTGGTCTATGTTCTATGTTGAT----AGCTCCTCTTTTTTATTGTTTTCAAATCACCTATCGATGCTCCCTTTACCTTCTCCCAACACCTTGCCCTATCAGAAATTTTAAACTGGTAGTATGACCAAAATTTTCATTCCAATAGAATGCAAATCCTTTACAGCTACAGttt-ccactaaccattatcttcggacactactgaattaaggaaccctagtaaattgcccatgtgttagatgtaatcttctttgctcccattgtgtacaaacactccaacatcctttgggcactgtaaaatgccagttcagaacaggaattctctatctggtaacatgaaaagcccaatacgattatagaacagtctcagattctcattgaataaaaccaggactatgtttcttgatgcaaaattcttcccttggccttaggacttcacaacacactgagtataaggaagtaagaatgaaaaatacagatcccatcagtgagcgactgagggaggtcatacccaatttcacccttttgttttctgaccatgtgttctggtattctggctttgtggaaaaggtagagtgaacttacaattcagttattcaagtcaggtcactttggacagtgaaaggggttgttgttaataattacgttagaaattattattatgatgtcctgggaaaactggggcacatggtcacacaagagacagagtcatacattggtcattgctccaaagccattctgcatgctggagaggagtgcttcaggcttgcagggtgctgtctctcagcccgcactgtgctagaacctcccagaagccacctgcccttctgtaaagtcagTGGGTATCTGCAAGACAGGCTACCAGCAGCAAAGGTGGGCAAAGAGGGCACTGGCCAATGCCCGAACTGGGGGATGTCTTAATGTGTTTACTCTGCGTTCACGGAACGTGGACATGgaggctatgtaatctactgg-aaaaaatatgtatatatttctcacggttgtggaggctgaggggtctgagttcaaggtgccagcagatttggtgtctggagagaggtgctttctgcttccaagatggcaactctggctgtgtcctcacattgc---aggagtgtaaaagcaaacaggatctaactagtcccccagagtgccgttataagggtatataatcacctcctcaaggcctcacatcttaatcctgtcacactgaggatgaagtttcaacatgaattttagagggacactaatactgaaaccacagcaGGAGGCAGGGAGTGTTTTCATGGAGAGAATACTGTTGCCGTTACTGCA----CTAAGGCAGAAAAGGAGTGGGAGAGAATTACCCCCAACGCTCTGTCCTCTGGGCATCCCATCACCTTACACCTCTGGGCATCCCATCACCTTACACCGATCTTCCTCAGCCAAACCCGCATGGAAGTCCAAGACCAGGAAAACCCGAGTCATGCTATTTATAGAGGTATTGGCAGTTTTGAGGTGC--------ATAGAGAGGAGTCCGAGTCATGCTATTTATAGAGATAT----------------------------------------------------TGGCGGTTTTGGGGTGCATAGAGAGGGGTAGAGATTAAAG-GGGGTTGAAAGGTAAGTGAAGGTAAGCCATCACTGATATCTGTGAGATACTGTGCAGCAGGGGTTGGGGGGGAACTGGCTGGTTTTGGTCAGTGCTGTCTGTGAACACAGCCTTGGGAATGGAGAGACAGAGCTTGCCGGCTCTTCTC----TGGGGAGAATCAGGGCAGGTTATTTGCTCCATGTGTAGTGGGCAGACTACTATGTGGTTTTAGAATTTGGAAACTTTAGTAACTTTGCAAAAACTAT----------------------CCTCCGTCATATTTTAACATTAAAGAACACTATCATTTTAAACATGTGTTTTATGAACACATCTCCTTCCTCATGGTACTTGCCTTTTCTATACGTATCTGAAGCTCAGTTAAGCTTTTCTTAAT i rheMac3.chr13 C 0 C 0 s macFas5.chr13 105393700 5129 + 111193037 gattagcatttgaatcagcagactgagcaaagcaggtggccctccaccgtgtgagtgggcgtcatccgattcattgagaccagaatagaacagaaagcagagagagggggacttctccctctgcctcactgcttgagctgacacatcagccccctgtgctgttcttgactgggtctttcaccaccgaccctttggttttcgcagctacatcactgcctttcctgggtctccagctgcagatggcagatcacgagactttcagcccccataatcatgagagccaatttcttataataaactccctctccctctctctctc----------------tctct--atatat----aCACACACACGtattatatatatgtg--tatatatat------atacacacacacacacacacgcacTCacacacatactattgattctgtttctataaagaaccctgattaatacaAAGGGCAATTTCAAGGATTTGATTATATATATAAAATATTAAATGCCTTATGCATATAGCATCATAtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtCTCCTTTCACTGAGTTACCTCCTGATTTTTATGACTTTAGGATGAGAACCAGGGCTATTTTTCTAATAACACAGAT-ACCTTTCCTGAGAAAAATCATCCTAGGCATCCACAATGGCAAAGATCACATATGTGTACACACGTATGTATACATGTTTGTGTGGTCACATATGTGTGCATGCATGTATACATGTCTGCATGACCACATATGTGTATGCATGTGTAtt----agagttctctagagggacagaactaatagaatagatgtacatataaaagggagtttactaaggagaatcaattcacatgattacaagataaagtcccacgataggccatctgcacactgaggagcaacaaagccagta--ggatcagtccaagtcccaaaacctcagaagctgggaagtcaacaatgcagtctttagtctgtggtcaaaggcccaagagcccctggaaagtcactggtggaagtccaagtgtccaaaagctgaagaacttggagtctgatgtttgagaccaggatgcttccagcacaggaaaaagatgaaggccggaagactcagcaagtctgttcttccatcttcttctgcctgctttgtcctagccatgctggaggatgattagatggtgcccacccagacagagggtgggtctgcctcccccagcccacggacttaaatgttaatctcccttggcaacaccctcacagacacacacaggatcaatactttgcatccttcaatccaatcaagttgacactcaatattaactatcccaGCA------------------------------TGTGTGTGTGTGtatatatatatatatatatttgtataAAAACACAGCAAGATATCAGAATAAGCTTTGTACACTAGGACTATTTGCAAAGTTATTGTGTGAATATAAAGAACTAATATATATCTTAAAATTTTCTGTAGAGATAGTTGTATAC------------------------------------------------------------------------------------------------ACAggctgtaaaagtcagcattttttcctcatattattccagaacacataaaaaagcaacaaggaaaatggggag-gggggaagaaccaaatatatcctcagtgaagctagaaacagttagaatccgaagatttcaaaatgtatgtagagatgactaaatctagttggaatcaggcacaagccacacgggagtaaatgaagtatggaggtggtgaggccaatggccaataatctcagaaaacaccaacaaaaaggtactacctgaaaatgtgggaaattcgcctccatgttcaaaacctata-cccccttttttctaaccacaggagtgggaacaagtgtacataggctaccag--aaagtcccctcctggacccaattttgttcaagggaggaacaagggagattcaaccacacagagaatcaccagaggagccatagttgcaggaagcagtgtgtccctgtgacagccaagtaggcaagagctattgtggtgtgaGACCCAGAAGGTTGTCTTGATTCTGTCTCTGAAACTCTGTAGTTTCTATAAAGAGCTTATCCAGGAAAACCCAAACCATTTAGTAATATATTACAAAAATTAAAGGAAATAGATACCCATTTATACAAAAATTATCTAAAGAAATATTTG-AAAAGCAAAACTCaagtattagagagacaatgagaattatggaagactgacaaatgaactgaacacatacataactggaacatccaaaaaagaaaccaaaagagacagaaccaatactgcaaaattataattcaa-aacacttctgtgcaatgcatgaagacttgaatctacctttcaaaagggcacatcagaagcaaggcatatccattcatgataggcaaagagtgaaccacatctttaaaaaagtattagactt---aaaaaataaaatatctactgggcagccagaaaaacagagtaagtcactcatgggagaaatgaagaaagcggttctgatcctcctggctcccccagcagtagtgacgctggatggtaatgagggaagaccaacaagattctcaatgctc-ccaaggatttttatgtgcagccaaGGTAGTCTCACTATGTAGGCATGATATATCACAATTTGTTGCAGTTTTTATCAAGCAGGAATTCGGGAA-ATAATATTTTCATTAGTGTTTTTGAGAGAACAAAAACATGGCTATGTGTAGAAAAAGGGCAACACATTTGGTTACAGAAGGAAGGAAAACGATAACAACCGATTAAAGGAagatgccttggcagaatacagcaaaaagaaag-----------ttgtgagtattgaatgcattttgctgtagactaaaaccaaatgtggatgagggttac-gaataggctggaaatgtcatttgccccaataatgtagaaataatacattttacaatgtcaaagatgaagaaagatagtgaaggtaagaaagcctcattaattacctcacttg---tgactatgatgtgaaggataaattttaaaggtggcaaatctagcaaaagaaataaaAGCCTACTTAGCAGTGCAATGGTAAAGTAAGGAGGATAACTTTTACTATCCTCCTTACTTACAAAGGGCACCTGCCACTGTATGGTGATGGGGTGGTATCAACTCAGTCATACCCCTACTTGGAACCTAGGTTGTAATGTTAGTTCCACCAGTACTCTTCGGATCAAGCAGCATGATAAAGGGAGGGAAGACGTTAATCAGCACAAGCATACAATCGCTGATATGGTTTCTCTCTCTGCTGTTGGTCTATGTTCTATGTTGAT----AGCTCCTCTTTTTTATTGTTTTCAAATCACCTATCGATGCTCCCTTTACCTTCTCCCAACACCTTGCCCTATCAGAAATTTTAAACTGGTAGTATGACCAAAATTTTCATTCCAATAGAATGCAAATCCTTTACAGCTACAGTTT-CCACTAACCATTATCTTCGGACACTACTGAATTAAGGAACCCTAGTAAATTGCCCATGTGTTAGATGTAATCTTCTTTGCTCCCATTGTGTACAAACACTCCAACATCCTTTGGGCACTGTAAAATGCCAGTTCAGAACAGGAATTCTCTATCTGGTAACATGAAAAGCCCAATACGATTATAGAACAGTCTCAGATTCTCATTGAATAAAACCAGGACTATGTTTCTTGATGCAAAATTCTTCCCTTGGCCTTAGGACTTCACAACACACTGAGTATAAGGAAGTAAGAATGAAAAATACAGATCCCATCAGTGAGCGACTGAGGGAGGTCATACCCAATTTCACCCTTTTGTTTTCTGACCATGTGTTCTGGTATTCTGGCTTTGTGGAAAAGGtagagtgaacttacaattcagttatgcaagtcaggtcactttggacagtgaaaggggttgttgttaataattacgttagaaattattattatgatgtcctgggaaaactggggcacatggtcacACAAGAGACAGAGTCATACATTGGCCATTGCCCCAAAGCCATTCTGCATGCTGGAGAGGAGTGCTTCAGGCCTGCAGGGTGCCGTCTCTCAGCCCGCACTGTGCTAGAACCTCCCAGAAGCCACCTGCCCTTCTGTAAAGTCAGTGGGTATCTGCAAGACAGGCTACCAGCAGCAAAGGTGGGCAAAGAGGGCACTGGCCAATGCCCGAACTGTGGGATGTCTTAATGTGTTTACTCTGCGTTCACGGAACGTGGACATGgaggctatgtaatctactggaaaaaaatatgtatatatttctcacggttgtggaggctgaggggtctgagttcaaggtgccagcagatttggtgtctggagagaggtgctttctgcttccaagatggcaactctggctgtgtcctcacattgc---aggagtgtaaaagcaaacaggatctaactagtcccccagagtgctgttataagggtatataatcacctcctcaaggcctcacatcttaatcctgtcacactgaggatgaagtttcaacatgaattttagagggacactaatactgaaaccagagcaGGAGGCAGGGAGTGTTTTCATGGAGAGAATACTGTTGCCGTTACTGCA----CTAAGGCAGAAAAGGAGTGGGAGATAATTACCCCCAACGCTCAGT-------------------------CCTCTGGGCATCCCATCACCTTACACCGATCTTCCTCAGCCAAACCCGCATGGAAGTCCAAGACCAGGAAAACCCGAGTCATGCTATTTATAGAGGTATTGGCAGTTTTGAGGTGC--------ATAGAGAGGGGTCCGAGTCATGCTATTTATAGAGATAT----------------------------------------------------TGGCGGTTTTGGGGTGCATAGAGAGGGGTAGAGATTAAAG-GGGGTTGAAAGGTAAGTGAAGGTAAGCCATCACTGATATCTGTGAGATACTGTGCAGCAGGGGTTGGGGGGGAACTGGCTGGTTTTGGTCAGTGCTGTCTGTGAACACAGCCTTGGGAATGGAGAGACAGAGCTTGCCGGCTCTTCTC----TGGGGAGAATCAGGGCAGGTTATTTGCTCCATGTGTAGTGGGCAGACTACTATGTGGTTTTAGAATTTGGAAACTTTAGTAACTTTGCAAAAACTAT----------------------CCTCCGTCATATTTTAACATTAAAGAACACTATCATTTTAAACATGTGTTTTATGAACACATCTCCTTCCTCATGGTACTTGCCTTTTCTATACGTATCTGAAGCTCAGTTAAGCTTTTCTTAAT i macFas5.chr13 C 0 C 0 s papAnu2.chr13 123102443 5157 - 128036923 gattaacatttgaatcagcagACTGAGCAAAGCAGGTGGCCCTCCACCGTGTGAGTGGGCGTCATCCGATTCATTGAGACCAGAATAGAACAGAAAGCAGAGAGAGGGTGACTTCACCCTCTGCCTCACTGCTTGAGCTGACACATCAGCCCCCTGTGCTGTTCTTGACTGGGTCTTTCACCACCGACCCTTTGGTTTTCGCAGCTACATCACtgcctttcctgggtctccagctgcaGATGGCAGATCACGAGACTTTCAGCCCCCATAATCATGAGagccaatttcttataataaactctgtctccccctctctc------------------tatat--atatat----acacacacacgtattatatatatgtgtatatatatat------atacacacacacacacacacgcacccacacacatactattgattctgtttctataaagaaccctgattaatacaaaGGGCAATTTCAAgaatttgattatatatataaaatattaaatcccTTATGCATATagcat------cgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctcctttCACTGAGTTACCTCCTGATTTTTATGACTTTAGGATGAGAACCAGGGCTATTTTTCTAATAACACAGAT-GTCTTTCCTGAGAAAAATCATCCTAGGCATCCACAATGGCAAAGATCACATATGTGTACGcacgtatgtatacatgtttgtgtggccacatatgtgtgcatgcatgtatacatGTCTGCATGACCACATATGTGTATAGATGTGTAtt----agagttctctagagggacagaactaatagaatagatgtacatataaaagggagtttactAAGGAGAATCAATTCACATGATTACAAGATaaagtcccacgataggccatCTGCACACTGAGGAGCAACAAAGCCAGTA--GgatcagtccaagtcccaaaacctcagaaGCTGGGAAGTCAACAATGCAGTCTTTAGTCTGTGgtcaaaggcccaagagcccctggcaagtCACTGGTGGAAGTCCAAgtgtccaaaagctgaagaacttggagtctgatgtttgagacCGGGTTGCTTCCAGCACAGGAAAAAGATGAAGGCCGGAAGACTCAGCAGGTCTGTTCTTCCgtcttcttctgcctgctttgtccTAGCCATGCTGGAGgatgattagatggtgcccacccagacagagggtgggtctgcctcccccagcccacagacttaaatgttaatctcctttggcaacaccctcacagatacacacaggatcaatactttgcatccttcaatccaatcaagttgacactcaatattaactatcccagcatgtgtgtgtatatatgtatgtgtgtgtgtgtgtgtgtgtatatatatatatatatatatatttgtataaaaacaCAGCAAAATATCAGAATAAGCTTTGTACACTAGGACTATTTGCAAAGTTATTGTGTGAATATAAAGAACtaatatatatcttaaaattttctgtagagatagttGTATAT------------------------------------------------------------------------------------------------ACAGGCTGTAAAAGTCAGCATTTTTTCCTCATATTATTCCAGAACACATAAAAAAGCAACAAGGAAAATGGGGAGAGGGGGAAGAACCAAATATATCCTCAGTGAAGCTAGAAACAGTTAGAATCTGAAGATTTCAAAATGTATGTAGAGATGACTAAATCTAGTTGGAATCAGGCACAAGCCACACGAGAGTAAATGAAGTATGGCGGTGGTGAGGCCAATGGCCAATAATCTCAGAAAACACCAACAAAAAGGTACCCCCTGAAAATGTGGGAAATTCACCTCCATGTTCAAAACCTATA-CCCCCTTTTTTCTAACCACAGGAGTGGGAACAAGTGTACATAGGCTACCAGAAAAAGTCCCCTTCTGGACCCAATTTTGTTCAAGGGAGGAACAAGGGAGATTCAACCACACAGAGAATCACCAGAGGAGCCATAGTTGCAGGAAGCAGTGTGTCCCTGTGACAGCCAAGTAGGCAAGAGCTATTGTGGTGTGAGACCCAGAAGGTAGTCTTGATTCTGTCTCTGAAACTCTGTAGTTTCTATAAAGAGCTTATCCAGGAAAACCCAAACCATTTAGTAATATATTACAAAAACTAAAGGAAATAGATACtcatttatacaaaaattatctaaagaaatatttg-aaaagcaaaactcAAGTATTAGAGAGACAATGAGAATTATGGAAGACTGACAAATGAATTGAACACATACATAACTGGAACAtccaaaaaagaaaccaaaagagaCAGAACCAATACTGCAAAATTATAATTCAA-AACACTTCTGTGCAATGCATGAAGACGTGAATCTACCTTTCAAAAGGGCACATCAGAAGCAAGACATATCCATTCATGATAGGCAAAGAGTGaacctcatcttaaaaaaagtattagactt---aaaaaataaaatatctactgGGCAGCCAGAAAAACAGAGTAAGTCACTCAtgggagaaatgaagaaagcTGTTCTGATCCTCCTGGCTACCCCAGCAGTAGTGACGCTGGGTGGTAATGAGGGAAGACCAACAAGATTCTCAATGCTC-CCAAGGATTTTTATGTGCAGCCAAGGTAGTCTCACTATGTAGGCATGATATATTACAATTTGTTGCAGTTTTTATCAAGCAGGAATtcaggaa-ataatattttcattagtgTTTTTGAGAGAACAAAAACATGGCTATGTGGAGAAAAAGGGCAACACATTTGgttacagaaggaaggaaaacgGTAACAATCGATTAAAGGAAGATACCTTGGCAGAATACAGCAAAAAGAAAG-----------TTGTGAGTATTGAATGCATTTTGCTGTAAACTAAAACCAAATGTGGATGAGGGTTAC-GAATAGGCTGGAAATGTCATTTTTCCCAATAATgtagaaataatacattttacaatgtcaaagatgaagaaaaatagtGAAGGTAAGAAAGCCTCATTAATTACCTCACTTG---TGACTATGATGTGAAGGATAAATTTTAAAGGTGGCAAatctagcaaaagaaataaaagcctacTTAGCAGTGCAATGGTAAAGTAAGGAGGATAACTTTTACTATCCTCCTTACTTACAAAGGGCACCTGCCACTGTATGGTGATGGGGTGGTATCAACTCAGTCATACCCCTACTTGGAACCTAGGTTGTAATGTTAGTTCCACCAGTACTCTTCGGATCAAGCAGCATGATAAAGGGAGAGAAGATGTTAATCAGCACAAGCATACAATCGCTCATATGGTTTCTCTCTCTGCTGTTGGTCTATGTTCTATGTTGAT----AGCtcctcttttttattgttttcaaatcaCCTATCGATGCTCCCTTTACCTTCTCCCAACACCTTGCCCTATCAGAAATTTTAAACTGGTAGTATAACCAAAATTTTCATTCCAATAGAATGCAAATCCTTTACGGCTACAGTTT-CCACTAATCATCATCTTTGGACACTACTGAATTAAGGAACCCTAGTAAATTGCCCATGTGTTAGATGTAATCTTCTTTGCTCCCATTGTGTACAAACACTCCAGCATCCTTTGGGCACTGTAAAATGCCAGTTCAAAACAGGAATTCTCTATCTGGTAACATGAAAAGCCCAATACGATTATAGAACAGTCTCAGATTCTCATTGAATAAAACCAGGACTATGTTTCTTGATGCAAAATTCTTCCCTTGGCCTTAGGACTTCACAACACACTGAGTATAAGGAAGtaagaatgaaaaatacagatCCCATCAGTGAGAGACTGAGGGAGGTCATACCCAGTTTCATCCTTTTGTTTTCTGACCATGTGTTCTGGTATTCTGGCTTTGTGGAAAAGGTAGAGTGAACTTACAATTCAGTTATGCAAGTCAGGTCACGTTGGACAGTGAAAGGGGTTGTTGTTAATAATTAcgttagaaattattattattatgtcctGGGAAAACTGGGGCACATGGTCACACAAGAGACAGAGTCATACATTGGTCATTGCTCCAAAGCCATTCTGCATGCCAGAGAGGAGTGCTGCAGGCCTGCAGGGTGCCATCTCTCAGCCCGCACTGTGCTAGAACCTCCAAGAAGCCACCTGCCCTTCTGTAAAGTCAGTGGGTATCTGCAAGACAGGCTACCGGCAGCAAAGGTGGGCAAAGAGGGCACTGGCCAATGCCCGAACTGTGGGATGTCTTAATGTGTTTGCTCTGCGTTCACAGAACGTGGACATGGAGGCTATGTAatctactggaaaaaaatatgtatatatttctcacCGTTGTGGAGGCTGAGGGGTCCAAgttcaaggtgccagcagatttggtgtctggagAGAGGTGCTTTCTGCTTCCAAGATAGCaattctggctgtgtcctcacattgc---AGGAGTGTAAAAGCGAACAGGATCTAACTAGTCCCCCAGAGTGCTGTTATAAGGGTATATAATCACCTCCTCAAGGCCTCACATCTTAATCCTGTCACACTGAGGatgaagtttcaacatgaattttagagggaCACTAATACTGAAACCATAGCAGGAGGCAGGGAGTGTTTTCATGGAGAGAATACTGTTGCCGTTACTGCA----CTAAGGCAGAAAAGGAGTGGGAGAGAATTACCCCCAACGCTCTGT-------------------------CCTCTGGGCATCCCATCACCTTACACCGATCTTCCTCAGCCAAATCCACATGGAAGTCCAAGCCCAGGAAAACCCGAGTCATGCTATTTATAGAGGTATTGGCAGTTTTGAG------------------------------------GTGCATAGAGAGGGGTCCGAGTCATGCTATTTATAGAGATAT------------------------TGTCAGTTTTGGGGTGCATAGAGAGTGGTAGAGATTAAAG-GGGGTTGAAAGGTAAGTGAAGATAAGCCATCACTGATATCTGTGAGATACTGTGCAGCAGGGGTTGCGGGGGAACTGGCTGGTTTTGGTCAGTGCTGTCTGTGAACACAGCCTTGGGAATGGAGAGACAGAGCTTGCCGGCTGGATTATAAGTGGGGAGAGTCAGGGCAGGTTATTTGCTCCATGTGTAGTGGGCAGACTACTATGTGGTTTTAGAATTTGGAAACTTTAGTAACTTTGCAAAAACTAT----------------------CCTCCATCATATTTTAACATTAAAGAACGCTATCATTTTAAACATGTGTTTTATGAACACAT---CTTCCTCATGGTACTTGCCTTTTCTATACGTATCTGAAGCTCAGTTAAGCTTTTCTTAAT i papAnu2.chr13 M 50 C 0 s chlSab2.chr14 102042927 5116 + 107702431 gattaacatttgaatcagcaggctgagcaaagcaggtggccctccaccgtgtgagtgggcgtcctccgattcattgagaccagaatagaacagaaagcagagagagggtgacttcaccctctgcctcactgcttgagctgacacatcagccccctgtgctgttcttgactgggtctttcaccaccgaccctttggttttcgcagctacatcactgcctttcctgggtctccagctgcagatggcagatcacaagactttcagccctcataatcatgagagccaatttcttataataaactccctctccccccctctc----------------------t--ctctat----atacacacacgtattatatatatgtg------tgtat------atatatacacacacacacacgcacccacacacacactattgattctgtttctataaagaaccctgattaatacaaagggaaatttcaaggatttgattatatatataaaatattaaatcccttatgcatatagcatcgtg--tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttctcctttcactgagttacctcctgatttttatgactttaggatgagaaccagggctatttttctaataacacagat-acctttcctgagaaaaatcatcctaggcatccacaatggcaaagatcacatatgtgtacgcacgtatgtatacATGTTTGTGTGGTCACATATGTGtgcatgcatgtatacatgcctgcatgACCACATATGTGTATGCATGTGTAtt----agagttctctagagggacagaactaatagaatagatgtacatacaaaagggagtttactaaggagaatcaattcacgtgattacaagataaagtcccacgataggccatctgcacactgaggagcaacaaagccagta--ggatcagtccaagtcccaaaacctcagaagttgggaagtcaataatgcagtctttagtctgtggtcaaaggcccaagagcccctggcaagtcactggtggaagtccaagtgtccaaaagctgaagaacttggagtctgatgtttgagaccaggatgcttccagcacaggaaaaagatgaaggccggaagactcagcaagtctgttcttccatcttcttctgcctgctttgtcctagccatgctggcagatgagtagatggtgcccacccagacagagggtgggtctgcctcccccagcccacagacttaaatgttaatctcctttggcaacaccctcacagatacacacaggatcaatactttgcatccttcaatccaatcaagttgacactcaatattaactatcccaGCA------------------------------tgtgtgtgtgtgtgtgtgtATATATATATATTTGTATAAAAACACAGCAAGATATCAGAATAAGCTTTGTACACTAGGACTATTTGCAAAGTTATTGTGTGAATATAAAGAACTAATATATATCTTAAAATTTTCTGTAGATATAGTTGTATAC------------------------------------------------------------------------------------------------ACAggctgtaaaagtcagcatttgttcctcgtattattccagaacacataaaaaagcaacaaggaaaatggggagagggggaagaaccaaatatatcctcagtgaagctagaaacagttagaatccgaagatttcaaaatgtatgtagagatgactaaatctagttggaatcaggcacaagtcacatgggagtaaatgaagtatgaaggtagtgaggccaatagccaataatctcagaaaacaccaacaaaaaggtactccctgaaaatgtgggaaattcacctccatgttcaaaacctata-cccccttttttctaaccacaggagtgggaacaagtgtacacag------aa--aaagtcccctcctggacccaattttgttcaagggagcaacaagggagattcaaccacacagagaatcaccagaggagccatagttgcaggaagcagtctgtccctgtgacagccaagtaggcaagagccattgtggtgtgaGACCCAGAAGGTTGTCTTGATTCTGTCTCTGAACCTCTGTAGTTCCTATAAAGAGCTTATCCAGGAAAACCCAAACCATTTAGTAATATATTACAAAAATTAAAGGAAATAGATACCCAATTATACAAAAATTATCTAAGGAAATATTTGAAAAAGCAAAACTCaagtattagagagacaatgagaattatggaagactgacaaatgaattgaacacatacataactggaacatccaaaaaagaaaccaaatgagaccgaaccaatactg-aaaattataattcaa-aacacttctgtgcaatgcatgaagagttgaatctacctttcaaaagggcacatcagaagcaaggcacatccattcatgataggcaaagagtgaaccacatcttaataaaagtattagactt--aaaaaaataaaatatctactgggcagccagaaaaacagagtaagtcactcatgggagaagtgaagaaagctgttctgatcctcctggctcccccagcagtagtgacgctggatggtaacgagggaagaccaacaagattctcaatgccc-ccaaggatttttatgtgcagccaaGGTAGTCTCACTATGTAGGCATGATATATTACAATTTGTTGCAGTTTTTATCAAGCAGGAATTCAGGAA-ATAGTATTTTCATTAGTGTTTTTGAGAGAACAAAAACATGGCTATGTGTAGAAAAAGGGCAACACATTTGGTTACAGAAGGAAGGAAAACGATAACAACCGATTAAAGGAAGATGCCTTGGCAGAAtacagcaaaaagaaag-----------ttgtgagtattgaatgcattttgctgtagactaaaaccaaatgtggatt-gggttac-gaataggctggaaatgtcatttgccccaataatgtagaaataatacaTTTTACAATGTCAAAGATGAAGAAAGATAGTGAAGGTAAGAAAGCCTCGTTAATTACCTCACTTG---TGACTATGATGTGAAGGATAAATTTTAAAGGTGGCAAATCTAGCGAAAGAAATAAAAGCCTACTTAGCAGTGCAATGGTAAAGTAAGGAGGATAACTTTTACTATCCTCCTTACTTACAAAGGGCACCTGCCACTGTATGGTGATGGGGTGGTATCAACTCAGTCATACCCCTACCTGGAACCTAGGTTGTAATGTTAGTTCCACCAGTACTCTTCGGATCAAGCAGCATGATAAAGGGAGGGAAGACATTAATCAGCACAAGCATACAATCGCTGATATGGTTTCTCTCTCTGCTGTTGTTCTATGTTCTATGTTGAT----AGCTCCTCTTTTTTACTGTTTTCAAATCACCTATCAATGCTCCCTTTACCTTGTCCCAACACCTTGCCCTATCAGAAATTTTAAACTGGTAGTATGACCAAAATTTTCATTCCAATAGAATGCAAATCCTTTACAGCTACAGTTT-CCACTAACCATCATCTTTGGACACTACTGAATTAAGGAACCCTAGTAAATTGCCCATGTGTTAGATGTAATCTTCTTTGCTTCCATTGTGTACAAACACTCCAACATCCTTTGGGCACTGTAAAATGCCAGTTCAAAACAGGAATTCTCTATCTGGTAACATGAAAAGCCCCATACGATTATAGAACAGTCTCGGATTCTCATTGGATAAAACCAGGACTATGTTTCTTGATGCAAAATTCTTCCCTTGGCCTTAGGACTTCACAACACAGTGAGTATAAGGAAGTAAGAATGAAAAATTCAGATCCCATCAGTGAGAGACTGAGGGAGGTCATACCCAATTTCACCCTTTTGTTTTCTGACCATGTGTTCTGGTATTCTGGCTTTGTGGAAAAGGtagagtgaacttacaattcagttatgcaggtcaggtcactttggacagtgaaaggggttgttgttaataattacgttagaaattattattatgatgtcctgggaaaactggggcacatggtcacACAAGAGACAGAGTCATACATTGGTCATTGCTCCAAAGCCATTCTGCATGCTGGAGAGGAGTGCTTCAGGCCTGCAGGGTGCCAGCTCTCAGCTCGCACTGTGCTAGACCCTCCAAGAAGCCACCTCCCCTTCTGTAAAGTCAGTGGGTATCTGCAAGACAGGCTACCAGCAGCAAAGGTGGGCAAAGAGGGCACTGGCCAATGCCCGAACTGTGGAACgtcttaatgtgtttgctctgcgttcacagaacgtggacatggaggctatgtaatctactggaaaaaaatacgtatatatttctcacggttgtggaggctgaggggtctgagttcaaggtaccagcagatttggtgtctggagagggtcgctttctgcttccaagatggcaactctggctgtgtcctcacattgc---aggagtataaaagcaaacaggatctaactagtcccccagagtgctgttataagggtatataatcacctcctcaaggcctcacatcttagtcctgtcacactgaggatgaagtttcaacatgaattttagagggacactaatattgaaaccatagcaGGAGGTAGGAAGTGTTTTCATGGAGAGAATACTGTCGCCATTACTGCA----CTAAGGCAGAAAAGGAGTGGGAGAGAATTACCCACAATGCTCTGT-------------------------CCTCTGGGCATCCCATCACCTTACACTGATCTTCCTCAGCCAAACCCGCATGGAAGTCCAAGCCCAGGAAAACCCGAGTCATGCTATTTATAGAGGTATTGGCAGTTTTGAGGTGC--------ATAGAGAGGGGTCC----------------------------------------------------GAGTCATGCTATTCATAGAGATATTGGCGGTTTTGGGGTGCGTAGAGAGTGGTAGAGAATAAAG-GGGGTTGAAAGGTAAGTGAAGATAAGCCATCACTGATATCTGTGAGATACTGTGCAGCAGGGCTTTGGGGGGAACTGGCTGGTTTTGGTCAGTGCTGTCTGTGAACACAGCCTTGGGAATGGAGAGACAGAGCTTGCTGGCTGGATTATAAGTGGGGAGAATCAGGGCAGGTTATTTGCTCCATGTGTAGTGGGCAGACTACCATGTGGTTTTAGAATTTAGAAACTTTAGTAACTTTGCAAAAATTGT----------------------CCTCCATCATATTTTAAAATTAAAGAACACTATCATTTTAAACATGTGTTTTATGAACATATCTCTTTCCTCATGGTACTTGCCTTTTCTATACATATCTGAAGCTCAGTTAAGCTTTTCTTAAT i chlSab2.chr14 C 0 C 0 e calJac3.chr14 5657478 13 - 108792865 I e canFam3.chr17 60744605 279 - 64289059 I a score=2217892.000000 s hg38.chr1_KI270765v1_alt 19148 758 + 185285 AAAAGTATGGATGCACAAAAGAGGA-ATATTTTCTGCTTGTTCCAATATCTCTTGAGGTTATTAACATGTTTGACTTCTTAGTCATGATAAAATGGCTTTCAGTTATGA-CCCCTCCTCTCCTTTTTTTTTTTTTGAACTTTCCCAAGAccaccatccaaactcaagccttcat-tgcaactgatcaaatccagtgcaaaagctttatggtcttatacgtagcatctgccttcaatctgcttgcttcagtgcctctt-ccacattgttacccaagtatcttcctaaaacatcacattaagttgggtgatttttctgctcaaaaagcgatcatgga--tcctctttgcatatataatagaacacagttcttaGCCTAGCATTAAACATGTTCCGTAATCTGAGCCTAGTATGTTTTTTCTGGCTCTACTTCATTCTTAAGCTATCTATGCAATACAGATACGAATTTGAACATGCCCAACCTCTCTTGC--CTCAGTTATTTCATTTGTCCAATTCCTTTCATCTAGCATGCAGTCACCAGGATTTGCCTGTGCTGTAAACCCCACTGTAGCTCAAGGCTCCATTCAGATTCACCCTCCTCCATCAAGCCTACTCTTGACGGTTACATTTAATCCTTCTTGATAGATTAAGTCCTTATCTTCATGGTGGACCTTCTGTTCTGGGTGCTGTTATTCACCTTGTGGTTTCTGGGCTGTCTTGGCCAAGTCTTCCCCCAT-AATGTTAGCCATCTCCCAGACTTAAAGTTT s panTro4.chr1_AACZ03149435_random 124445 758 + 173505 AAAAGTATGGATGCACAAAAGAGGA-ATATTTTCTGCTTGTTCCAATATCTCTTGAGGTTATTAACATGTTTGACTTCTTAGTCATGATAAAATGGCTTTCAGTTATGA-CCCCTCCTCTCCTTTTTTTTTTTT--AACTTTCCCAAGACCACCATCCAAACTCAAGCCTTCAT-TGCAACTGATCAAATCCAGTGCAAAAGCTTTATGGTCTTATACGTAGCATCTGCCTTCAATCTGCTTGCTTCAGTGCCTCTT-CCACATTGCTACCCAAGTATCTTCCTAAAACATCACATTAAGTTGGGTGATTTTTCTGCTCAAAAAGCGATCATGGA--TCCTCTTTGCATATATAATAGAACACAGTTCTTAGCCTAGCATTAAACATGTTCCGTAATCTGAGCCTAGTATGTTTTTTCTGGCTCTACTTCATTCTTAAGCTATCTATGCAATACAGATACGAATTTGAACATGCCCAACCTCTCTTGCCTCTCAGTTAGTTCATTTGTCCAATTCCTTTCATCTAGCATGCAGTCACCAGGATTTGCCTGTGCTGTAAACCCCACTGTAGCTCAAGGCTCCATTCACATTCACCCTCCTCCATCAAGCCTACTCTTGACGGTTACATTTAATCCTTCCTGATAGATTAAGTCCTTATCTTCATGGTGGACCTTCTGTTCTGGGTGCTATTATTCACCTTGTGGTTTCTGGGCTGTCTTGGCCAAGTCTTCCCCCAT-AATGTTAGCCATCTCCCAGACTTAAAGTTT i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chr2a 107068755 754 + 113028656 AAAAGAATGGATGCACAAAAGAGGA-CTATTTTCTGCTTGTTCCAATATCTCTTGAGGTTATTAACATGTTTGACTTCTTAGTCACGATAAAATGGCTTTCAGTTATGA-CCCCTCCTCTCCTTTTTTTTTTG---AACTTTCccaagaccaccatccaaactcaagccttcat-tgcaactgatcaaatccagtgcaaaagctttatggtcttatacgtagcatctgccttcaatctgcttgcttcagtgcctctt-ccacattgttacccaagtatcttcctaaaacatcaca-taagttgggttatttttctgctcaaaaagcactcatgga--tcctttttgcatatataatagaacacagttcttagcctagcattaaacatgttccataatctgagccTAGTATGTTTTTTCTGGCTCTACTTCATTCTTTAGCTATCTATGCAATACAGATACGAATTTGAGCATGCCCGACATGTCTTGC--CTCAGTTATTTCATTTGTCCAATTCCTTTCATCTAGCGTGCAGTCACCAGGATTTGCCTGTGCTGTAAACCCCACTGTAGCTCAAGGCTCCATTCAGATTCACCCTCCTCCATCAAGCCTACTCTTGACGGTTACATTTAATCCTTCCTGATAGATTATGTCCTTATCTTCAAGGTGGACCTTCTGTTCTGGGTGGTATTATTCACCTTGTGGTTTCTGGGCTGTCCTGGCCAAGTCTTCCCCCAT-AATGTTAGCCATCTCTCAGGCTTAAAGTTT i ponAbe2.chr2a C 0 C 0 s nomLeu3.chr19 76400030 755 - 81552678 AAAAGAATGGAAGCACAAAAGCGGG-ATATTTTCTGCTTGTTCCAATATCTCTTCAGGTTATTAACATGTTTGACTTCTTAGTCACGATAAAATGGCTTTCAGTTATGACCCCCTCCTCTCCTTTTTTCTTTG---AACTTTCCCAAGACCACCATCCAAACTCAAGCCTTCAT-CGCAACTGATCAAATCCAGTGCAAAAGCTTTATGGTCTTATACGTAGCATCTGCCTTCAATATGCTTGCTTCAGTGCCTCTT-TCACATTGCTACCCAAGCATCTTCCTAAAACATCACA-TAAGTTGGGTTATTTTTCTGTTCAAAAAGCCCTCATGGA--TCCTTTTTGCATATATAATAGGGCACAGTTCTTAGCCTGCCATTAAACATGTTCCATAATCTGAGCCTAGTATGTTTTTTCTGGCTCTACTTCATTCTTAAGCTATCTATGCAATACAGATACGAATTTGAACACGCCCGACCTCTCTTGC--CTCAGTTATTTCATTTGTCCAATTCCTTTCATCTAGCATGCAGTCACCAGGATTTGCCTGTGCTGTAAACCCCACTGTAGCTCAAGGCTCCGTTCAGATTCACCCTCCTCCATCAAGCCTACTCTTGACAGTTACATTTAATCCTTCCTGATAGATTATGTCCTTATCTTCATGGTGGACCTTCTGTTCTGGGTGGTATTATTCACCTTGTGGTTTCTGGGCTGTCCTGGCCAAGTCTTCCCCCAT-AATGTTAGCCATCTCCCAGGCTTAAAGTTT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr13 133318837 750 - 137160470 AAAAGAATGGATGCACAAAAGAGGA-TTTTTTTCTGCTTGTTCCAATATCTCTTGAGATTATTAACATGTTTGACTTCTTAGTCACGATAAG-------TCAGTTATGA-CCCCTCCTCTCCTTTTTCTCTTA---AACTTTCCCAAGACCACCATCCAAACTCAAGCCTTCAC-TGCAACTGATCAAATCCAGTGCAAAAGCTTTGTGGTCTTATACTTAGCATctgccttcaatctgcttgcttcagtgcctcttcccacattgctacccaagtatcttcctaaaacatcaca-tgagttgggttatttttctgctcaaaaagcactcatgggatccttttttgcatatataatagaatacagttcttagcctagcattaaacatgttccataatctgagtcTAGTATGCTTTTTCTGTTTGTACTTCATTCTTAAGTTATCTATGTAATACAGAtatgaatttgaacatgctcaacctctcttgc--ctcagttatttcatttgtCCAATTCCTTTCATCTAGCATGCAGTCACCAGGATTTGCCTGTGCTGTAAACCCCACTGTAGCTCAAGGCTCCATTCAGAGTCACCCTCCTCCATCAAGCCTGTTCTTGACGGTTACATTTAATCCTTCCTGATAGATTATGTCCTTATCTTCATGGTGGACCTTCTGTTCTGGGTGGTATTATTCACCCTGTGGTTCCTGGGCTTTCCTGGCCAAGTCTTGCCCCAT-AATGTTAGCCATCTGACAGGCttaaagttt i rheMac3.chr13 C 0 C 0 s macFas5.chr13 105398829 750 + 111193037 AAAAGAATGGATGCACAAAAGAGGA-TTTTTTTCTGCTTGTTCCAATATCTCTTGAGATTATTAACATGTTTGACTTCTTAGTCACGATAAG-------TCAGTTATGA-CCCCTCCTCTCCTTTTTCTCTTA---AACTTTCCCAAGACCACCATCCAAACTCAAGCCTTCAC-TGCAACTGATCAAATCCAGTGCAAAAGCTTTGTGGTCTTATACTTAGCATCTGCCTTCAATCTGCTTGCTTCAGTGCCTCTTCCCACATTGCTACCCAAGTATCTTCCTAAAACATCACA-TGAGTTGGGTTATTTTTCTGCTCAAAAAGCACTCATGGGATCCTTTTTTGCATATATAATAGAATACAGTTCTTAGCCTAGCATTAAACATGTTCCATAATCTGAGTCTAGTATGCTTTTTCTGGTTGTACTTCATTCTTAAGTTATCTATGTAATACAGAtatgaatttgaacatgctcaacctctcttgc--ctcagttatttcatttgtCCAATTCCTTTCATCTAGCATGCAGTCACCAGGATTTGCCTGTGCTGTAAACCCCACTGTAGCTCAAGGCTCCATTCAGAGTCACCCTCCTCCATCAAGCCTGTTCTTGACGGTTACATTTAATCCTTCCTGATAGATTATGTCCTTATCTTCATGGTGGACCTTCTGTTCTGGGTGGTATTATTCACCCTGTGGTTCCTGGGCTGTCCTGGCCAAGTCTTGCCCCAT-AATGTTAGCCATCTGACAGGCTTAAAGTTT i macFas5.chr13 C 0 C 0 s papAnu2.chr13 123107600 752 - 128036923 AAAAGAATGGATGCacaaaagaggattttttttctgcttgttccAATATCTCTTGAGGTTATTAGCATGTTTGACTTCTTAGTCACGGTAAG-------TCAGTTATGA-cccctcctctcctttttctctta---aaCTTTCCTAAGACCACCATCCAAACTCAAGCCTTCACTTGCAACTGATCAAATCCAGTGCAAAAGCTTTGTGGTCTTATACTTAGCATCTGCCTTCAATCTCCTTGCTTCAGTGCCTCTTCCCACATTGCTACCCAAGTATCTTCCTAAAACATCACA-TGAGTTGGGTTATTTTTCTGCTCAAAAAGCACTCATGGGATCCTTTTTTGCATATATAATAGAATACAGTTCTTAGCCTAGCATTAAACATGTTCCATAATCTGAGTCTAGTATGCTTTTTCTGGTTGTACTTCATTCTTAAGTTATCTATGTAATACAGATATGAATTTGAACATGCCCAACCTCTCTTGC--CTCAGTTATTTCATTTGTCCAATTCCTTTCATCTAGCATGCAGTCACCAGGATTTGCCTGTGCTGTAAACCCCACTGTAGCTCAAGGCTCCATTCAGAGTCACCCTCCTCCATCAAGCCTGTTCTTGACGGTTACATTTAATCCTTCCTGATAGATTATGTCCTTATCTTCATGGTGGACCTTCTATTCTGGGTGGTATTATTCACCCTGTGGTTTCTGGGCTGTCCTGCCCAAGTCTTGCCCCAT-AATATTAGCCATCTCACAGGTTTAAAGTTT i papAnu2.chr13 C 0 C 0 s chlSab2.chr14 102048043 749 + 107702431 AAAAGAATGGATGCACAAAAGAGGA-TTTTTTTCTGCTTGTTCCAATATCTCTTGAGGTTATTAACATGTTTGACTTCTTAGTCACGATAAG-------TCAGTTATGA-CCCCTCCTCTCCTTTTTCTCTTA---AACTTTCCCAAAACCACCATCCAAACTCAAGCCTTCAC-TGCAACTGATCAAATCCAGTGCAAAAGCTTTGTGGTCTTATACTTAGCATCTGCCTTCAATCTGCTTGCTTCAGTGCCTCTT-CCACATTGCTACCCAAGTATCTTCCTAAAACATCACA-TAAGTTGGGTTATTTTTCTGCTCAAAAAGCACTCATGGGATCCTTTTTTGCATATATAATAGAATACAGTTCTTAGCCTAGCATTAAACATATTCCATAATCTGAGTCTAGTATGCTTTTTCTGGCTGTACTTCATTCTTAAGTTATCTACGTAATACAGAtatgaatttgaacatgcccaacctctcttgc--ctcagttatttcatttgtCCAATTCCTTTCATCTAGCATGCAGTCGCCAGGATTTGCGTGTGCTGTAAACCCCACTGTAGCTCAAGGCTCCATTCAGAGTCACCCTCCTCCATCAAGCCTGTTCTCGACGATTACATTTAATCCTTCCTGATAGATTATGTCCTTATCTTCATGGTGGACCTTCTGTTCTGGGTGGTATTATTCACCCTGTGGTTTCTGGGCTGTCCTGGCCAAGTCTTGCCCCAT-AATGTTAGCCATCTCACAGGCTTAAAGTTT i chlSab2.chr14 C 0 C 0 s calJac3.chr14 5657491 753 - 108792865 AAAAAAATAAATGCACAAAAGAGGA-ATATTTTCTGCTTGTTTCAATATGTCTTGAGATTATTAACACGTTTGACTTCTTAGTCACGATCAAATGGTT-TCAGTTATGA-CTCCTCTTCTACTTTTT-TTTTA---AACTTTCCCAAGAGCATCATCCATGCTCGAGCTTTCAT-TGCAACCTATCTAATCCAGTGCAAAAGCTTTCTGGTCTTACACGTAGCATCTGCCTTCAATCTGCTTGCTTCAGTGCCTCTT-CTAAACTGCTACCCAACTATCTTCCTCAAACGTCACA-TTAGTTGGGTTATTCTTCTGCTCAAAAAGTGCTGATGGA--TCCATTTTGCATATGTAATAGAACACAGCTCTTAGCCTGGCATTGAACATGTTCCATAATCTGGGCTTAGTATGCTTTTTCTGGCTCTAATTCATTCTTAAGATACCTATGCCCTACAGATACGAATTTGAACATGCTCAACCTCTCTTGC--CTCAGTTATTTTATTCGTCCAATTCCTTTCATCTAACATGCAGTCACCAGGTTTTGCCTGTGCTGTAAACCCCACTGTGGCTCAGGGCTCCATCCGGATTCACCCTGCTCCATCAAACCTACTCTTGAAAGTTACATTGAATCCTTCCTGATAGATTGTGTTCTTATCTTCATGATAGCCCTTCTGTTCTGGGAGGTATTATTCACCCTGTAGTTCTGGGGTTGTCCCGCCCAAGTCTTTCCCCATGAGTGTTAGCCGTCTCCCAGGCTTAAAGATC i calJac3.chr14 I 13 C 0 e canFam3.chr17 60744605 279 - 64289059 I a score=645643.000000 s hg38.chr1_KI270765v1_alt 19906 345 + 185285 ACAAAGCGTACATTGTCCTTTTTTTTTTGttttttttttttgttgttgttgttttggtttctttttttgagatgaagtgacgctctgtcgccaggctggagtgcagtggcgtgatcttggctcactgcaacctccgcctcccaggttcaagtgagtctcctgcgtcagcctcccaagtagctgggactataggcacccgccaccacacccagctaatttttgtactttcagtagagacagggtttcaccatgttggccagaatggtcacaatctcttggcctcacgatctacctgcctcggcctcccaaagtgctgggattagaggcgtgagccaccatgcccag s panTro4.chr1_AACZ03149435_random 125203 342 + 173505 ACAAAGCGTACATTGTCC--tttttttggggttttttttttgtt-ttttttttttggtttctttttttgagatgaagtgacgctctgtcgccaggctggagtgcagtggcgtgatcttggctcacttcaacctccgcctcccaggttcaagtgagtctcctgcctcagcctcccaagtagctgggactataggcacccgccaccacacccagctaatttttgtactttcagtagagacagggtttcaccatgttggccagaatggtcacaatctcttggcctcacgatctacctgcctcggcctcccaaagtgctggtattagaggcgtgagccaccatgcccag i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chr2a 107069509 336 + 113028656 ACAAAGCATACATTGTCC--tttttt-----ttttttttttttt-ttttttttttggtttctttttttgagaggaa-tcacgctctgtcgccaggctggagtgcagtggcatgatctcggctcactgcaacctccgcctcccaggttcaagcgagtctcctgcctcagcctcccaagtagctgggactacaggcacaagccaccacgcccagctaatttttgtacttttagtagagacagggtttcaccatgttggccagaatggtctcaatctcttgacttcatgatttgcccaccttggcctcccaaagtgttgggattacaggcgtgagccaccacgcccag i ponAbe2.chr2a C 0 C 0 s nomLeu3.chr19 76400785 334 - 81552678 ACAAAGCGTACATTGTCC--TTTTTT-----TTGTTTGTTTGGG----tttttttggtttctttttttgagatggagtcatgctctgtcaccaggctggagtgcagtggcgtgatctcagctcactgcaacctccgcctcccaggttcaagcgagtctcctgcctcagcctcccaagtagctcggactacaggtgcctgccaccacacccagctaatttttgtatttttggtagagacggggtttcaccgagttagccaggatggtctcgatctcctgacctcgtgatctgcctgcctcggcctcccaaagtgctgggattacaggcgtgagtcaccgcacccga i nomLeu3.chr19 C 0 C 0 s rheMac3.chr13 133319587 305 - 137160470 acaaagcatacactgtcc--tttgtt--------------------------------------ttttgagacggagtcttgctctgtcgccaggctggagtgcagtggtgcgatctcggctcactgcaacctccacttcccaggttcaagtgattatcttgcctcagcctcctgagtagctgggactacaggtgtgcaccaccacgcccagctaatttttgtacttttagtagagacggggtttcaccatgttggccagaatggtcttgatcgcttgacctgatggtccacctccctcgccctcccaaagtgctgagattacaggcatgagccacagcacccag i rheMac3.chr13 C 0 C 0 s macFas5.chr13 105399579 305 + 111193037 ACAAAGCATACACTGTCC--tttgtt--------------------------------------ttttgagacggagtcttgctctgtcgccaggctggagtgcagtggtgcgatctcagctcactgcaacctccacttcccaggttcaagtgattatcttgcctcagcctcctgagtagctgggactacaggtgtgcaccaccacgcccagctaatttttgtacttttagtagagacggggtttcaccatgttggccagaatggtcttgatcgcttgacctgatggtccacctccctcgccctcccaaagtgctgagattacaggcatgagccaccgcgcccag i macFas5.chr13 C 0 C 0 s papAnu2.chr13 123108352 305 - 128036923 ACAAAGCATACATtgtcc--tttgtt--------------------------------------ttttgagatgaagtcttgctctgtcaccaggctggagtgcagtggtgcgatctcggctcactgcaacctccacttcccaggttcaagtgattatcttgcctcagcctcctgagtagctgggactacaggtgtgcaccaccatgcccagctaatttttgtacttttagtagagacgggatttcaccatcttggccagaatggtcttgatcgcTTGACCTGATGGTCCACCtccctcgccctcccaaagtgctgagactataggcatgagccaccgtgcccag i papAnu2.chr13 C 0 C 0 s chlSab2.chr14 102048792 305 + 107702431 ACAAAGCATACATTGTCC--tttgtt--------------------------------------ttttgagatggagtctcgctctgtcaccaggctggagtgcagtggtgcgatctcggctcactgcaacctccacttcccaggttcaagtgattattttgcctcagcctcctgagtagcttggactacaggtgtgcgacaccacgcccagctgatttttgtacttttagtagagatggggtttcaccatgtcggccagaatggtcttgatctcttgacctgatggtccacctccctcgccctccaaaagtgctgagattacaggcatgagctaccatgcccag i chlSab2.chr14 C 0 C 0 e calJac3.chr14 5658244 0 - 108792865 C e canFam3.chr17 60744605 279 - 64289059 I a score=9000.000000 s hg38.chr1_KI270765v1_alt 20251 2 + 185285 cc s panTro4.chr1_AACZ03149435_random 125545 2 + 173505 cc i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chr2a 107069845 2 + 113028656 cc i ponAbe2.chr2a C 0 C 0 s nomLeu3.chr19 76401119 2 - 81552678 cc i nomLeu3.chr19 C 0 I 491 s rheMac3.chr13 133319892 2 - 137160470 cc i rheMac3.chr13 C 0 C 0 s macFas5.chr13 105399884 2 + 111193037 cc i macFas5.chr13 C 0 C 0 s papAnu2.chr13 123108657 2 - 128036923 cc i papAnu2.chr13 C 0 C 0 s chlSab2.chr14 102049097 2 + 107702431 cc i chlSab2.chr14 C 0 C 0 s calJac3.chr14 5658244 2 - 108792865 CC i calJac3.chr14 C 0 C 0 s canFam3.chr17 60744884 2 - 64289059 CC i canFam3.chr17 I 279 C 0 a score=1178012.000000 s hg38.chr1_KI270765v1_alt 20253 499 + 185285 AAAGCATTCATTTTCTCATTTATCTTTACTTGTGATGTGCTACAATCATAGATATTAACATGTTTCCAATTTAGCAAGACTAGGAAACTGAAGCCCGTAGATTTTA--CTCACAAAGCTAAGTAGTATACACCTCGGAAAGGAATTAATTCCCAGATACAAGGATGTATCCTGCACCACCACTGTCTCTGTTCTACAGCTGCCAAAGTGTAGAAGTAAAGTGGGTGCACATGCTTCATTCTTCAGCAGTCCACCAAGGATCCCCTGAATCCTTCTGCTCACATAGGTGATGGTAGTCAAGAGACC---TGAAATGGGTCCGTCTGGAAAAGCAACTGATGAATTTAACTTTCTACATAGTTAGA-----------------AAACAAAAATCAACTCACTT-GA--CAAGTACCTGGAAGAATTTGTATATGATTTAGCATCTTTGTGCTTTATGGACAAAATGAATACTACAG-AAAAGCATTTATAA-ATGATAAATCTATCAATCCAAATAAAATACCATCTA s panTro4.chr1_AACZ03149435_random 125547 499 + 173505 AAAGCATACATTTTCTCATTTATCTGTACTTGTGATGTGCTACAATCATAGATATTAACATGTTTCCAATTTAGCAAGACTAGGAAACTGAAGCCCGTAGATTTTA--GTCACAAAGCTAAGTAGTATACACCTCGGAAAGGAATTAATTCCCAGATACAAGGATGTATCCTGCACCACCACTGTCTCTGTTCTACAGCTGCCAAAGTGTAGAAGTAAAGTGGGTGCACATGCTTCATTCTTCAGCAGTCCACCAAGGATACCCTGAATCCTTCTGCTCACATAGGTGATGGTAGTCAAGAGACC---TGAAATGGGTCCATCTGGAAAAGCAACTGATGAATTTAACTTTCTACATAGTTAGA-----------------AAACAAAAATCAACTCACTT-GA--CAAGTACCTGGAAGAACTTGTATATGATTTAGCATCTTTGTGCTTTATGGACAAAATGAATACTACAG-AAAAGCATTTATAA-ATGATAAACCTATCAATCCAAATAAAATACCATCTA i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chr2a 107069847 501 + 113028656 AAAGcatacattttctcatttatctttacttgtgatgtgctacaatcatagatattaacatgtttcccatttagcaagactaggaaactgaagcccgtagaTTTTA--GTCACAAAGCTAAGTAGTATACACCTCAGAAAGGAATTAATTCCCAGATACAAGGATGTATCATGCACCACCATTGTCTCTGCTCTACAGCTGCCAAAGTATAGAAGTAAAGTGGGTGCACATGCTTCATTCTTCACCAGTCCACCAAGGATCCCCTGAATCCTTCTGCTCACATAGGCGATGGTAGTCAAGAGACC---CAAAATGGGTCGGTCTGGAAAAGCAACTGATGAATTTAACTTTCTACATAGTTAGA-----------------AAACAAAAATCAACTCACTTAGA--GAAGTACCTGGCAGAATTTGTGTATGATTTAGCGTCTTTGTACTTTCTGGACAAAATGAATACTACAGAAAAAGCATTTATAA-ATGATAAATCTAGCAATCCAAATAAAATACCATCTA i ponAbe2.chr2a C 0 C 0 s rheMac3.chr13 133319894 500 - 137160470 aaagcatacattttctcttttatctttacttgtgatgtgctacaatcatagatattaacatctttcccatttagcaagattaggaaactgaagACAGCATA-TTTA--ATGACAAAGCTCAGTAGTATAC-CCTCAGAAAGGAATTAACTCCCAGACACATGGATGTATCATGCACCACCATTGTCTCTGTTCTACAGCTGTCAAAGTGTAGAAGTAAACTGGGTGCACATGCTTCATTCTTCACCAGTCCACCAAGGATCCCCTGAATCCATCTGATCACATAAGCGATGGTAGTCAAGGGACC---CGAAATGGGTCCATCTAGAAAAGCAACTGATAAATTTAACTTTCTACATAATTAGA-----------------AAACAAAAATCAGCTCACTT-GGATCAAGTACCTGGCAAGGTTTGTATATGATTTAGAGTCTTTGCACTTTATGGACAAAATGAATAGTATAAAAAATGTGTTTATAA-ATGATAAATCTAGCAATCCAAATAAAATACCATCTA i rheMac3.chr13 C 0 C 0 s macFas5.chr13 105399886 497 + 111193037 AAAGCATACATTTTCTC---TATCTTTACTTGTGATGTGCTACAATCAtagatattaacatctttcccatttagcaagattaggaaactgaagacagCATA-TTTA--ATGACAAAGCTCAGTAGTATAC-CCTCAGAAAGGAATTAACTCCCAGACACATGGATGTATCATGCACCACCATTGTCTCTGTTCTACAGCTGTCAAAGTGTAGAAGTAAACTGGGTGCACATGCTTCATTCTTCACCAGTCCACCAAGGATCCCCTGAATCCATCTGATCACATAAGCGATGGTAGTCAAGGGACC---CGAAATGGGTCCATCTAGAAAAGCAACTAATAAATTTAACTTTCTACATAGTTAGA-----------------AAACAAAAATCAGCTCACTT-GGATCAAGTACCTGGCAAGGTTTGTATATGATTTAGAGTCTTTGCACTTTATGGACAAAATGAATAGTATAAAAAATGTGTTTATAA-ATGATAAATCTAGCAATCCAAATAAAATACCATCTA i macFas5.chr13 C 0 C 0 s papAnu2.chr13 123108659 501 - 128036923 aaagcatacattttctcttttatctttactTGTGATGTGCTACAATCATAGATATTAACATCTTTCCCATTTAGCAAGATTAGGAAACTGAAGACAGTAGA-TTTA--ATCACAAAGCTCAGTAGTATACACCTCAGAAAGGAATTAACTCCCAGACACATGGATGTATCATGCACCACCATTGTCTCTGTTGTACAGCTGTCAAAGTGTAGAAGTAAACTGGGTGCACATGCTTCATTCTTCACCAGTCCACCAAGGATCCCCTGAATCCATCTGATCACATAAGCGATGGTAGTCAAGGGACC---CGAAATGGGTCCATCTAGAAAAGCAACTGATAAATTTAACTTTCTACATAGTTAGA-----------------AAACAAAGATCAGCTCACTT-GGATCAAGTACCTGGCAAGGTTTGTATATGATTTAGAGTCTTTGCACTTTATGGACAAAATGAATAgtataaaaaatgtgtttataa-atgATAAATCTAGCAATCCAAATAAAATACCATCTA i papAnu2.chr13 C 0 C 0 s chlSab2.chr14 102049099 499 + 107702431 AAAGCATACATTTTCTCATTTATCTTTACTTGTGATGTGCTACAATCAtagatattaacatctttcccatttagcaagattaggaaactgaagacagTAGA-TTTA--ATCACAAAGCTCAGTAGTATACACCTCAGAAAGGAATTAACTCCCAGACACATGGATGTATCATGCACCACCATTGTCTC--TTCTACAGCTGTCAAAGTGTAGAAGTAAACTGCGTGCACATGCTTCATTCTTCACCAGTCCACCAAGGATCCCCTGAATCCATCTGATCACATAAGCGATGGTAGTCAAGGGACC---CGAAATGGGTCCATCTAGAAAAGCAACTGATAAATTTAACTTTCTATGTAGTTAGA-----------------AAACAAAAATCAGCTCACTT-GGATCAAGTACCTGGCAAGGTTTGTATATGATTTAGAGTCTTTGCACTTTATGGACAAAATGAATAGTATAAAAAACGTGTTTATAA-ATGATAAATCTAGCAATCCAAATAAAATATCATCTA i chlSab2.chr14 C 0 C 0 s calJac3.chr14 5658246 510 - 108792865 AAAGCATACATTTTCTCATTTATCTTTACCTGTGGTGTGCTACAATCGCATACATAAACGGCTTTCCCATGTAACAAGACTAGGACACTGAAGCCCATAGATTTTA--GTCACAAAACTAAGTAGTATGAAGTTCAAAAAGGAATTAGCTCCCAGATACATGCATATATCATGCACCACCATTGCCTCTGTTCTACAGCTGTCCGTGTATAG------AGTGGGTACACGGGCTTCATTCTTCATTAGTCCACCGAGGATCCCCTGAATCCATCTGCTCACATAGGCGATGGTAGTCAAGGGACC---TGAAATAGGAGCATCTGGAAAAGCAACTGATGAATTCAACTCTCTACAGAGTTAGAAAAATAATAAA--GAAGAAAAGAAAATCAACTCACTT-ACACTAAGTACCTGGCGGAGTGTGTATATGAGTTAGAG-CTTTGTACTTTATGGACAAAATGAATACTACAGAAAAAGCATTTATAA-GTGATATATCTAGCAATTCAAATAAAATGCCATCTA i calJac3.chr14 C 0 C 0 s canFam3.chr17 60744886 506 - 64289059 AAAGACTATGTTTTCTTATCTGCCTTTCCCTGCGGTGGGCTGCAAGCACTG-TGTTCACATGCTTCCC-TCTCACAAGACTAGGAGACAGAAGCTCACAGA-TGTACCATCAAAAAGGTAAGTGATGTCCAGGTCAGGAAGGAATGGACCCCTGGACTCAAG------TCAT--ACTACCACTCTCCTGGTTGCACAGCCATCAGCCTGCAGAG--AGAGTGTGGGCGCTTGCCTCAGTCTCCTCCAATGCACAGATG-CCTTCTGAGTCCATCCCATCACCCAGGGAGTGGTGGTCAAAGGCCCATTTGAAATTGGCCCATCT-GAAAAGCATCTGTTAAAATTAAGTTTCTATGCAGTTAGAACAACAATAAAGGGAAGAAAAGAGAATCTGGTTG-TT-AGACCAAGTTCCTGGTGGCGTTTATATATAATTCAGGGTCTTTCCATTTTGCAAACAAAACAAATATTACAGAAGA---ATTTCTAAGAAGCTAAATCCATCAGTCTCAGGGAGAAAACATTAA i canFam3.chr17 C 0 C 0 e nomLeu3.chr19 76401121 491 - 81552678 I a score=7153.000000 s hg38.chr1_KI270765v1_alt 20752 16 + 185285 CTTTGTGATGTAtttc s panTro4.chr1_AACZ03149435_random 126046 16 + 173505 CTTTGTGATGTAtttc i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chr2a 107070348 16 + 113028656 CTTCGTGATGTAtttc i ponAbe2.chr2a C 0 C 0 s canFam3.chr17 60745392 16 - 64289059 CTTCAGGATGTATTCC i canFam3.chr17 C 0 I 37 e calJac3.chr14 5658756 0 - 108792865 C e chlSab2.chr14 102049598 0 + 107702431 C e rheMac3.chr13 133320394 0 - 137160470 C e papAnu2.chr13 123109160 0 - 128036923 C e macFas5.chr13 105400383 0 + 111193037 C e nomLeu3.chr19 76401121 491 - 81552678 I a score=23489.000000 s hg38.chr1_KI270765v1_alt 20768 106 + 185285 tttttctttttctttttcttttttttatctgagatggagtcttgctctgttgcccaggctggagtgcagaggcatgatctcaattcactgcaagctccgcctcctg s panTro4.chr1_AACZ03149435_random 126062 106 + 173505 tttttctttttctttttcttttttttttctgagatggagtcttgctctgttgcccaggctggagtgcagaggcatgatctcaattctctgcaagctctgcctcctg i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chr2a 107070364 97 + 113028656 tttttctttttctttttttt---------tgagatggagtcttgctctgtcacccaggctggagtacagtggcgtgatcttggctcgctgcaagctctgcctcctg i ponAbe2.chr2a C 0 I 186 e calJac3.chr14 5658756 0 - 108792865 C e chlSab2.chr14 102049598 0 + 107702431 C e rheMac3.chr13 133320394 0 - 137160470 C e canFam3.chr17 60745408 37 - 64289059 I e papAnu2.chr13 123109160 0 - 128036923 C e macFas5.chr13 105400383 0 + 111193037 C e nomLeu3.chr19 76401121 491 - 81552678 I a score=1537.000000 s hg38.chr1_KI270765v1_alt 20874 16 + 185285 ggttcacgccattctc s panTro4.chr1_AACZ03149435_random 126168 16 + 173505 ggttcacgccattctc i panTro4.chr1_AACZ03149435_random C 0 C 0 e calJac3.chr14 5658756 0 - 108792865 C e chlSab2.chr14 102049598 0 + 107702431 C e rheMac3.chr13 133320394 0 - 137160470 C e ponAbe2.chr2a 107070461 186 + 113028656 I e canFam3.chr17 60745408 37 - 64289059 I e papAnu2.chr13 123109160 0 - 128036923 C e macFas5.chr13 105400383 0 + 111193037 C e nomLeu3.chr19 76401121 491 - 81552678 I a score=43757.000000 s hg38.chr1_KI270765v1_alt 20890 189 + 185285 ctgcctcagcctccagagtagctggggctacaggtgcccaccaccatgcctagctaattttttgtattttttagtagagactgggtttcaccatgttagccaggaaggtctccatctgctgacctcatgatctgcccgcctcagccttccaaagtgctgggattacaggtgtgagccactatgcccggc s panTro4.chr1_AACZ03149435_random 126184 189 + 173505 ctgcctcagcctccagagtagctggggctacaggtgcccaccaccatgcctagctaattttttgtattttttagtagagactgggtttcaccatgttatccaggaaggactccatctcctgacctcatgatctgcccgcctcggccttccaaagtgctgggattacaggtgtgagccactatgcccggc i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chr2a 107070647 189 + 113028656 ctgcctcagcctctcgagtagctgggactacaggtgcatgccaccatgcccggcgaattttttgtattttttagtagagatggggtttcactgtgttagccaggatggtctggatctcctgacctcatgatccacccacctccgccacctgaagtgctgggattacaggcatgagccaccgcgcctggc i ponAbe2.chr2a I 186 C 0 e calJac3.chr14 5658756 0 - 108792865 C e chlSab2.chr14 102049598 0 + 107702431 C e rheMac3.chr13 133320394 0 - 137160470 C e canFam3.chr17 60745408 37 - 64289059 I e papAnu2.chr13 123109160 0 - 128036923 C e macFas5.chr13 105400383 0 + 111193037 C e nomLeu3.chr19 76401121 491 - 81552678 I a score=2100.000000 s hg38.chr1_KI270765v1_alt 21079 1 + 185285 c s panTro4.chr1_AACZ03149435_random 126373 1 + 173505 c i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chr2a 107070836 1 + 113028656 c i ponAbe2.chr2a C 0 C 0 s rheMac3.chr13 133320394 1 - 137160470 C i rheMac3.chr13 C 0 C 0 s macFas5.chr13 105400383 1 + 111193037 C i macFas5.chr13 C 0 C 0 s papAnu2.chr13 123109160 1 - 128036923 C i papAnu2.chr13 C 0 C 0 s chlSab2.chr14 102049598 1 + 107702431 C i chlSab2.chr14 C 0 C 0 e calJac3.chr14 5658756 0 - 108792865 C e canFam3.chr17 60745408 37 - 64289059 I e nomLeu3.chr19 76401121 491 - 81552678 I a score=165708.000000 s hg38.chr1_KI270765v1_alt 21080 73 + 185285 TTTTTGATGTATTTCATAAATAACTAGAGTGGCATTACTTTAATCAGTTAAAAGCTTGTTATATGCAAAAATT s panTro4.chr1_AACZ03149435_random 126374 73 + 173505 TTTTTGATGTATTTCATAAATAACTAGAGTGGCATTACTTTAATCAGTTAAAAGTTTGTTATATGCAAAAATT i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chr2a 107070837 73 + 113028656 TTTTTGATGTATTTCATAAATAACTAGAGTGGCATTTCTTTAATCAGTTAAAAGTTTGTTATATGCAAGAATT i ponAbe2.chr2a C 0 C 0 s rheMac3.chr13 133320395 73 - 137160470 TTTTTGACATATTTGATAAATAACTAGAGTGCCATTTCTTTAATCAGTTAAAAGTTTGTTATATGCAAGAATT i rheMac3.chr13 C 0 C 0 s macFas5.chr13 105400384 73 + 111193037 TTTTTGACATATTTGATAAATAACTAGAGTGCCATTTCTTTAATCAGTTAAAAGTTTGTTATATGCAAGAATT i macFas5.chr13 C 0 C 0 s papAnu2.chr13 123109161 73 - 128036923 TTTTTGACATATTTGATAAATAACTAGAGTGCCATTTCTTTAATCAGTTAAAAGTTTGTTATATGCAagaatt i papAnu2.chr13 C 0 C 0 s chlSab2.chr14 102049599 73 + 107702431 TTTTTGACATATTTCATAAATAACTTGAGTGCCATTTCTTTAATCAGTTAAAAGTTTGTTATATGCAAGAATT i chlSab2.chr14 C 0 C 0 s calJac3.chr14 5658756 73 - 108792865 TTTTTGATGTATTACATAAATAACTAGAGTGGTATTTCTTTAATCAGTTAAAAGTCTGTGGTATGAAAGAATT i calJac3.chr14 C 0 C 0 e canFam3.chr17 60745408 37 - 64289059 I e nomLeu3.chr19 76401121 491 - 81552678 I a score=323146.000000 s hg38.chr1_KI270765v1_alt 21153 126 + 185285 TTAAAAGTTTGCTGCATGTAAAAGGCAGGCTTTCTA---AGTTTGTGAC----CAATCACAAGGATCCAAACTATTTTATATTTGTTTCAGATAACTGTAAATACATAGAAATTCATGTTAAAATAAGTAACA s panTro4.chr1_AACZ03149435_random 126447 126 + 173505 TTAAAAGTTTGCTGCACGTAAAGGGCAGGCTTTCTA---AGTTTGTGAC----CGATCACAAGGATCCAAACTATTTTATATTTGTTTCAGATAACTGTAAATACATAGAAATTCATGTTAAAATAAGTAACA i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chr2a 107070910 126 + 113028656 TTAAAAGTTTGCTACATGTAAAGGGCAGGCTTTCTA---AGTTTGTGAC----CGATCACAAGGATCCGAACTATTTTGTATTTGTTTCAGATAACTGTAAATACGTAGAAATTCATGTTAAAATAAGTGACA i ponAbe2.chr2a C 0 C 0 s rheMac3.chr13 133320468 126 - 137160470 TTGAAAGTTTTCTGCATGTAAAGGGCAAGCTTTCTA---AGTTTGTGAC----CGATCACAAGGATCCAAACTATTTTGTATTTGTTTCAGATAAGTGTAAATATATAGAAATTCATGTTAAAATATGTAACA i rheMac3.chr13 C 0 C 0 s macFas5.chr13 105400457 126 + 111193037 TTGAAAGTTTTCTGCATGTAAAGGGCAAGCTTTCTA---AGTTTGTGAC----CGATCACAAGGATCCAAACTATTTTGTATTTGTTTCAGATAAGTGTAAATATATAGAAATTCATGTTAAAATATGTAACA i macFas5.chr13 C 0 C 0 s papAnu2.chr13 123109234 126 - 128036923 ttgaaagttttctgcATGTAAAGGGCAAGCTTTCTA---AGTTTGTGAC----CGATCACAAGGATCCAaactattttgtatttgtttcagaTAAgtgtaaatatatagaaattcatgttaaaatatgtaaca i papAnu2.chr13 C 0 C 0 s chlSab2.chr14 102049672 126 + 107702431 TTGAAAGTTTTCTGCATGTAAAGGGCAGGCTTTCTA---AGTTTGTGAC----TGATCACAAGGATCCAAACTATTTTGTATTTGTTTCAGATAAGTGTAAATATATAGAAATTCATGTTAAAATATGTAACA i chlSab2.chr14 C 0 C 0 s calJac3.chr14 5658829 129 - 108792865 TTCAAAGTTTGCGGCATGTCAAGGGCAGACTTTCTA---AATTTGTGACCTATCGATTGCAAGGATCCAAAGCA-TTTGTGTTTGTTTCGGATAACTGTAAACACATAGAAATTCATGTTAAAATAAGAAACA i calJac3.chr14 C 0 C 0 s canFam3.chr17 60745445 127 - 64289059 TTAAATGTCTGTTGCCTGTAAGGAACATGCTTTCTAAAGAGTATGTGAC----ACATCACAAGAACCAGAGTTTGTTTG--TTTGTTTGTGATGGTTATAAACATATAGCCATTCCTGTTAAAATAAGTATCA i canFam3.chr17 I 37 I 2640 e nomLeu3.chr19 76401121 491 - 81552678 I a score=103150.000000 s hg38.chr1_KI270765v1_alt 21279 46 + 185285 CACCATATTTTTGCATGTTTTATTTATTAAGCTTGTTATTATATGT s panTro4.chr1_AACZ03149435_random 126573 46 + 173505 CACCATATTTTTGCATGTTTTATTTATTAAGCTTGTTATTATACAT i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chr2a 107071036 46 + 113028656 CACCATATTTTTGCATGTTTTATTTATTAAGCTTGTTATTATATGT i ponAbe2.chr2a C 0 C 0 s rheMac3.chr13 133320594 46 - 137160470 CATCATATTTTTGCATGTTTTATTTATTAAGCTTGTTATTACATGT i rheMac3.chr13 C 0 C 0 s macFas5.chr13 105400583 46 + 111193037 CATCATATTTTTGCATGTTTTATTTATTAAGCTTGTTATTACATGT i macFas5.chr13 C 0 C 0 s papAnu2.chr13 123109360 46 - 128036923 catcatatttttgcatgttttatttattaagcttgttattacatgg i papAnu2.chr13 C 0 C 0 s chlSab2.chr14 102049798 46 + 107702431 CATCATATGTTAGCATGTTTTATTTATTAAGCTTGTTATTACATGT i chlSab2.chr14 C 0 C 0 s calJac3.chr14 5658958 46 - 108792865 CGGCATATCTTTGCATGTTTTATTTATTCGGCTTTTTATTATATGT i calJac3.chr14 C 0 C 0 e canFam3.chr17 60745572 2640 - 64289059 I e nomLeu3.chr19 76401121 491 - 81552678 I a score=1998243.000000 s hg38.chr1_KI270765v1_alt 21325 821 + 185285 TTTCATATATTTTTTCTTCTGTTTTGATCAAAATGATGGG-AAAATAAGCTTGCATATTATAaggaacacatttcccccaatagtaagt-ggcttttgtcttttgctctttgataagatctttc-agagagacttttaattttcatcattaagtttaattaaattttgtaaagtggctggttcaataacacatggctttgagcatGAGTAATCAAATCGTACGTGTTTCCTGAatactatcatcaacttcaaatcttgagttagaatatgcacttagagtgag--ttgacattgatgacaatggatataacctatgtttcaaaatgctttcctgatgataatgtagaattttt-----------------------------ggctgactccttgccattgttttcaactttgctatgtggttgacaagagtatatacaactaattgaagaaatgtagctctgatat-----------tttattgttcttgaattatcatattatctaaatttggtatttctttgtaggaaattttttaacccacttaacc-ttttgtgaagttagtttagtcaaaagtagacaatttaatccttgaattcacttgccgtggttaagatgactgtgccatttaacaa-tagctgcaagagatcctgtgagtggggc---tgtgggaactcct--ctgccctctgcagggcccacatttct-caggaaaccagtgacttcacttgctatgcaaatctctgacatgcagcctgagtggggagtccagaatcagtctacatgttcaatattagtaacacttagatatgtgcctactttttaagataatagaaatagatacacaaattctcacaatttatttccagaa s panTro4.chr1_AACZ03149435_random 126619 821 + 173505 TTTCATATATTTTTTCTTCTGTTTTGATCAAAATGATGGG-AAAATAAGCTTGCATATTATAaggaacacatttccccaaatagtaagt-ggcttttgtcttttgctctttgataagatctttc-agagagacttttaattttcatcattaagtttaattaaattttgtaaagtggttggttcaataacacatggctttgagcatGAGTAATCAAATCATACGTGTTTCCTGAatactatcatcaacttcaaatcttgagttagaatatgcacttagagtgag--ttgacattgatgacaatggatataacctatgtttcaaaatgctttcctgatgataatgtagaattttt-----------------------------ggctgactccttgccattgttttcaactttgctacgtggttgacaagagtatatacaactaattgaagaaatgtagctctgatat-----------tttattgttcttgaattatcatattatctaaatttggtatttctttgtaggaaattttttaacccacttaacc-ttttgtgaagttagtttagtcaaaagtagacaatttaatccttgaattcacttgccatggttaagatgactgtgccatttaacaa-tagctgcaagagatcctgtgagtggggc---tgtgggaactcct--ctgccctctgcagggcccacatttct-caggaaatcagtgacttcacttgctatgcaaatctctgacatgcagcctgagtggggagtccagaatcagtctacatgttcaatattagtaacacttagatatttgcttactttttaagataatagaaatagatatggaaattctcacaatttatttccagaa i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chr2a 107071082 822 + 113028656 TTTCATATATTTTTTCTTCTGTTTTGATCAAAATGATGGGAAAAATAAGCTTGCATATTATAAGgaacacattttccccaatagtaagt-ggcttttgtcttttgctttttgataagatctttc-aaagagacttttaattttcatcattaagtttaattaaattttgtaaagtagctggttcaatatcacatggctttgagcatgagtaatcaaattgtgcatgtttcctgaatactatcatcaacttcaaatcttgagttagaatatgcacttagagtgag--ttgacattgatgacagtgggtataacctatgtttcaaaatgctttcttgatgataatgtagaattttt-----------------------------ggctgactccttgccattgttttaaactttgttatgtggttgacaagagtatatacaactaattgaagaaatgtagctctgatat-----------tttattgttcttgagttatcatattatctaaatttggtatttctttgtaagaaattttttaacccacttaacc-ttttgtgaagttagtttagttaaaagtagacaatttaatccttgaattcacttgctgcggttaagatgactgtgccatttaacaa-tagctgcaagagatcctgcgagtggggc---tgtgggagctcct--ttgccctctgcagcgcccacatttct-caggaaaccagtgacttcacttgctatgcaaatctctgacatgcagcctgagtggggagtccagaatcagtctacatgttcaatattagtaacacttagatatttgcctactttttaagataataggaatatatacagaaattctcacaatttattcccagaa i ponAbe2.chr2a C 0 C 0 s rheMac3.chr13 133320640 769 - 137160470 TTT--------------------------------------------------CATATTATgaagaacacatttcccccaataggaagt-ggcttttgtcttttgctctttgataagatctttc-aaagagacttt-aattttcatcattaagtttaattaaattttgtaaagtagctggttcaatatcacacagctttgagcatGAGTAATCAAATCGTATATGTTTCCTGAatactatcatcaacttcaaatcttgagtgagaatatgcacttagagtgag--ttggcattgatgacagtggatataacctatgtttcaaaatgctttcctgatgataatatag-attttt-----------------------------ggctgactccttg-cattgttttaaactttgttatgtggttgacaagagtatatacaactaattgaagaaatgtagctctgatat-----------tttattgttcttgaattatcatattatctaaatttggtacttctttgtaggaaactttttaacccacttaact-ttttgtgaagtcagtttagttaaaattagacaatttcatccttgaattcacttgccatagttaagatgactgtgccacttaacaa-tagctgcaagagaacctgtgagtggggc---tgtgggaactcct--ttgccctctgcagagcccacatttct-caggaaaccaatgacctcatttcctatgtaaatctcggacatgcagcctgagtggagagtccagagtcaggctacgtgttcaatattagtaacacttagatatttgcctactttttgagagaatagaaatagatacagaaattctcacaatttatttccagaa i rheMac3.chr13 C 0 C 0 s macFas5.chr13 105400629 769 + 111193037 TTT--------------------------------------------------CATATTATgaagaacacatttcccccaataggaagt-ggcttttgtcttttgctctttgataagatctttc-aaagagacttt-aattttcatcattaagtttaattaaattttgtaaagtagctggttcaatatcacacagctttgagcatGAGTAATCAAATCGTATATGTTTCCTGAatactatcatcaacttcaaatcttgagtgagaatatgcacttagagtgag--ttggcattgatgacagtggatataacctatgtttcaaaatgctttcctgatgataatatag-attttt-----------------------------ggctgactccttg-cattgttttaaactttgttatgtggttgacaagagtatatacaactaattgaagaaatgtagctctgatat-----------tttattgttcttgaattatcatattatctaaatttggtacttctttgtaggaaactttttaacccacttaacc-ttttgtgaagtcagtttagttaaaattagacaatttcatccttgaattcacttgccatggttaagatgactgtgccacttaacaa-tagctgcaagagaacctgtgagtggggc---tgtgggaactcct--ttgccctctgcagagcccacatttct-caggaaaccaatgacctcatttcctgtgtaaatctcggacatgcagcctgagtggagagtccagagtcaggctacgtgttcaatattagtaacacttagatatttgcctactttttgagagaatagaaatagatacagaaattctcacaatttatttccagaa i macFas5.chr13 C 0 C 0 s papAnu2.chr13 123109406 820 - 128036923 tttcatatattttttcttctgttttgatcAAAATGACGGGAAAAATAAGCTCACATATTATGAAGAACACATTTCCCCCAATAGGAAGT-GGCTTTTGTCTTTTGCTCTTTGATAAGATCTTTC-AAAGAGACTTTAAATTTTCATCATTAAGTTTAATTAAATTTTGTAAAGTAGCTGGTTCAATATCACATGGCTTTGAGCATGAGTAATCAAATCGTATATGTTTCCTGAATACTATCATCAACTTCAAATCTTGAGTGAGAATATGCACTTAGAGTGAG--TTGGCATTGATGACAGTGGATATAACCTATGTTTCAAAATGCTTTCCTGATGATAATATAG-ATTTTT-----------------------------GGCTGACTCCTTG-CATTGTTTTAAACTTTGTTATGTGGTTGACAAGAGTGTATACAACTAATTGAAGAAATGTAGCTCTGATAT-----------TTTATTGTTCTTGAATTATCATATTATCTAAATTTGGTACTTCTTTGTAGGAAACTTTTTAACCCACTTAACC-TTTTGTGAAGTCAGTTTAGTTAAAATTAGACAATTTCATCCTTGAATTCACTTGCCATGGTTAAGATGACTGTGCCACTTAACAA-TAGCTGCAAGAGAACCTGTGAGTGGGGC---TGTGGGAACTCCT--TTGCCCTCTGCAGAGCCCACATTTCT-CAGGAAACCAATGACCTCATTTCCTATGTAAATCTCAGACATGCAGCCTGAGTGGAGAGTCCAGAGTCAGGCTACGTGTTCAATATTAGTAACACTTAGatatttgcctactttttgagAGAATAGAAATAGATACAGAAATTCTCACAATTTATTTCCAGAA i papAnu2.chr13 C 0 C 0 s chlSab2.chr14 102049844 820 + 107702431 TTTCATATATTTTTTCTTCTGTTTTGATCAAAATGATGGGAAAAATAAGCTTGCATACTACGAGGGACACATTTCCcccaataggaagt-ggcttttgtcttttgctctttgataagatctttc-aaagagacttt-aattttcatcattaagtttaattaaattttgtaaagtagctggttcaatatcacatggctttgagcatGAGTAATCAAATCGTACATGTTTCCTGAatactatcatcaacttcaaatcttgagtgagaatatgcacttagagtgag--ttggcattgatgacagtggatataacctatgtttcaaaatgctttcctgatgataatgtag-attttt-----------------------------ggctgactccttgccattgttttaaactttgttacgtggttgacaagagtctatgcaactaattgaagaaatgtacctctgatat-----------ttgattattcttgaattatcatattatctaaatttggtacttctttgtaggaaactttttaacccacttaacc-ttttgtgaagtcagtttagttaaaattagacaatttcatccttgaattcacttgccatggttaagatgaccatgccacttaacaa-tagctgcaagagaacctgtgagcggggc---tgtgggaactcct--ttgccctctgcagagcccacatttct-caggaaaccaattacttcatttcctatgtaaatcttggacatgcagcctgagtggagagtccagagtcaggctacgtgttcaatattagtaacacttagatatttgcctactttttgagagaatagaaatagatacagaaattcttacaatttatttccagaa i chlSab2.chr14 C 0 C 0 s calJac3.chr14 5659004 801 - 108792865 TTTCACATATCTT---TCCTGCTTTTATCAAAATGATGGGAAAAATAAGCTTGTATATTATAaggaacacatttcccccaacagtaagt-ggtttttgtcttttgctctttgataagatctttt-aaagagacttttaattttcatcattaagtttaattaaactttttaaaggagctaattcaatatcacatggctttgagcatgagtaatcaaattgtacacgtttcctgaacactatcatcggctttcaatcttgagttagaatatgtgctttcagtgag--------ttgatgacagtggatgtaacctgtgtttcaaaatgctttcctgagggtaa----------tt-----------------------------ggctgactccttgccattgttttaaactttcttatgtggttgacaagagtatataggactaattgaagcagcgtagctctgatat-----------tttactgctcctgaattatcatatcatcttaatttgctacttttttgtaggaaactttttaacccacttaatc-tttcgtgaagtcagtttagttaaaagtagaaaatttaatccttaaattcacttgcctgagct-agatgagtgtgccacttagcaa-tagctgtgagggaacctgtgagtggggc---tgtgggagcgcct--ttgccctgtgtggggcccacagttct-taggaaaccagcgacttcgcttgctatgcaaatctctgacatgcagactgagtgg-gaatccggagtcagtctacatgttcaatattagaaatacttagatatttgcccgctttttaagataatagaaatagatatagaaattctcacaatttatttccgGAA i calJac3.chr14 C 0 I 302 s canFam3.chr17 60748212 830 - 64289059 tcccatatattatttctgctgtttttatcaaaataataggaaaaacaagcttttcagttattatgtaaagttttcaaccaataggaggcagatttttgtcttcta----ttgttaatatctctcaaaaaagacttttaaatgttgtcattaggtttaattaaattttg-gaagtagatgtctaagtgt-------tcttaagcctgtgtaattcgatcctacacattttccaaatacgatcatcacctttaagcctcaagtgagaatatccccttatgacaagggtcaatattgaagactgtagatacaacctatatttcaaggtgctttcctga---taatttag-gtttttttgtttgttttttgttttttgtttttttggtctggcttcttgtcattattttaaac--cattctgggggcaggaagagcatgtaggactaattgaagaagtaaaggtctgatatttcccattcacttcagcttacattaattatcatg----cttaatttgctatttctttgcaggaaacttttgaagctgcttaaccgtttggtaaggtgggtttagttaaaagtcgatgagttaaacctgaaattcacttaagggggcccgatgaactgcgctccctaacgattggctgtgaaggaa----tgagtgaggtccacgtggggtccactccctggcctgtgcaatgcccatttctctgtgggagcccagggcgatcatttggtgtgcaaacctctgatggaaggagtgactgaggattgtggagtcgctctgcatgttcaatatcactaacacttacgtatttttcctatttt------------------aataaagattctgacattttctttcCAGAG i canFam3.chr17 I 2640 C 0 e nomLeu3.chr19 76401121 491 - 81552678 I a score=615441.000000 s hg38.chr1_KI270765v1_alt 22146 265 + 185285 ccaaattgactattttTTAAAGCCAATTTTGAATACTTTTCATCTTGTAGATCAGATAAGTCCATATTGCTTCTTGGTCC-ATACTGAGGGTTTGATTCTCTT-GGATTCCTGAGGAAAATAGGCTCCCTGGCCCAGTAACTGCTG-TGACCTCAAACTCTTTCCATCATTGGAGTGCGGTCAACATCAGCAGTTGATGAAACTGAAAGTCAACATTTCAC-TTTAGCTTGTCCTGGAACTAAACTGAGAAGACGTCTTT-GGAACTG--GT-- s panTro4.chr1_AACZ03149435_random 127440 266 + 173505 ccaaattgactattttTTAAAGCCAATTTTGAATACTTTTCATCTTGTAGATCAGATAAGTCCATATTGCTTCTTGGTCC-ATACTGAGGGTTTGATTCTCTT-GGATTCCTGAGGAAAATAGGCTCCCTGGCCCAGTAACTGCTGATGACCTCAAACTCTTTCCATCGTTGGAGTGCGGTCAACATCAGCAGTTGATGAAACTGAAAGTCAACATTTCAC-TTTAGCTTGTCCTGGAACTAAACTGAGAAGGCGTCTTT-GGAACTG--GT-- i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chr2a 107071904 268 + 113028656 ccaaattgactattttttaaattccATTTTGAATACTTTTGATCTTGTAGATCAGATAAGTCCATATTGCTTCTTGGTCC-ATACTGAGGGTTTGATTCTCTT-GGATTCCTGAGGAAAATAGGCTCCATGGCCCAGTAACTGCTGATGACCTCAAATTCTTTCCGTCGTTGGTGCATGGTCAACATCAGCAGTTGATGAAACTGAAAGTCAATATTTCAC-TTTAGCTTGTCCTGGAACTAAACTGAGAAGAGGTCTTT-GGAACTGGTGT-- i ponAbe2.chr2a C 0 C 0 s rheMac3.chr13 133321409 268 - 137160470 ccaagttgactattttataaatcccATTTTGAATACTTTTGATCTTGTAGATAAGATAAGTCCATATTGCTTCTTGGACC-ATACTGAGGGTTTGATTCTCTTGGGGTTCCTGAGGAAAACAGGCTCCATGGCCCAGTAACTACTGATGAACTCAAATTCTTTCCGTCGTTGGAGCGTGGTCAACATCAGCAGTTGATGAAACTGAAAGTCAGCGTTTCACATGTAGCTTGTCCTGGAACTAAACTGAGAAGAGGTCTTT-GGAACTG--GT-- i rheMac3.chr13 C 0 I 2 s macFas5.chr13 105401398 268 + 111193037 ccaagttgactattttataaatcccATTTTGAATACTTTTGATCTTGTAGATAAGATAAGTCCATATTGCTTCTTGGGCC-ATACTGAGGGTTTGATTCTCTTGGGGTTCCTGAGGAAAACAGGCTCCATGGCCCAGTAACTACTGATGAACTCAAATTCTTTCCGTCGTTGGAGCGTGGTCAACATCAGCAGTTGATGAAACTGAAAGTCAGCGTTTCACATGTAGCTTGTCCTGGAACTAAACTGAGAAGAGGTCTTT-GGAACTG--GT-- i macFas5.chr13 C 0 I 2 s papAnu2.chr13 123110226 268 - 128036923 CCAAGTTGACTATTTTATAAATCCCATTTTGAATACTTTTGATCTTGTAGATCAGATAAGTCCATATTGCTTCTTGGGTC-ATACTGAGGGTTTGATTCTCTTGGGGTTCCTGAGGAAAACAGGCTCCATGGCCCAATAACTACTGATGAACTCAAATTCTTTCCGTCGTTGGAGCATGGTCAACATCAGCAGTTGATGAAACTGAAAGTCAGCGTTTCATATGTAGCTTGTCCTGGAACTAAACTGAGAAGAGGTCTTT-GGAACTG--GT-- i papAnu2.chr13 C 0 I 1174 s chlSab2.chr14 102050664 268 + 107702431 ccaagttgactattttataaatcccATTTTGAATACTTTTGATCTTGTAGATCAGATAAGTCCATATTGCTTCTTGGGCC-ATACTGAGGGTTTGATTCTCTTGGGGTTCCTGAGGAAAACAGGCTCCATGGCCCAGTAACTACTGATGAACTCAAATTCTTTCCGTCGTTGGAGCGTGGTCAACATCAGCAGTTGATGAAACTGAAAGTCAGCATTTCACATGTAGCTTGTCCTGGAACTAAACTGAGAAGAGGTCTTT-GGAACTG--GT-- i chlSab2.chr14 C 0 I 2 s calJac3.chr14 5660107 234 - 108792865 ccAAATTGACAAATTTTTATATCCCATTTTGCATACCTTGGGTCTTGTAGACCAGATAAGTCCATATTGCTTCTTGGTCC-ATAGTGAGGGTTTGA---------------------------------TGTCCCAGTAACTACTGATGACCTAAAATTCTTTCCGTCATTGGAGCTTGGTCAACATCAGCAGTTCATGAAACTGAAAGCCAACATTTCAC-TGAAGCTTGTCCTGGAATTAACCTGAGAAGAGGTCTTT-GGAACTG--GT-- i calJac3.chr14 I 302 I 2 s canFam3.chr17 60749042 245 - 64289059 CTAAACTGACTCATTTTTAGATC----------TACTCACATTCT------ACATGTGAGTCCA-GTGGCTTCTTGGGTCTATCCTAGGGATTTGGTTCTCTTAGGATTCTGGAATGACATAAGCTCTATCACCCACCAA---CTGATGACCTAGAA----TGTGAACTTTGAAGCACTGTCAATATGAGTGACTGTGGAAATGGAAGGGCAG-AGTCCAC-CCTGGCTTGTCGTGG-ACCAGACTGAGAAGGGATCTTTGGGGACTG--GGAT i canFam3.chr17 C 0 C 0 e nomLeu3.chr19 76401121 491 - 81552678 I a score=2845655.000000 s hg38.chr1_KI270765v1_alt 22411 1083 + 185285 CACACAGGGAGAAGTATCCCGGTGTGAGGTCAGATGCATGCACATTTCTCAGTGATG-TGACTACACACTGTGAACTCTGCGACTGACGCTTTCTCCATAGTGAGGAAAAAGACCTTGTTGAAAAATGCCAGAGTACTATCTTGGAACCTCAGAGTATTCGCATGACTCAAATATCAAGGGCTGTTTTTTTTT---------T-CTCCCCAAAATGGCTTAGAAAAC--AAAATGTATGGATCTGATTGTCTCTTATACAAAGACATGTTAGAGTTTGTAACCTGTGTAAATGCTGTAATTAAACCCTTGTTTTTACATGGATTCATTATGTTAAATTCTTCAGTAATTACTGACATTTTCTTTAATGTGTACATGTGGCGAACATAAGAATATGATTAGCTCGAGTTAAAAGTGTAAGCAGTAATGAGCATATTATGGGTCTCCCTTTGT----CTTTGGTCACTCTAAGCTTCTTGACAATAAAGCTTGACTTTTTATAGATTTGCTGCACTATGCAATTTTCTGTAAGCAAATAAATGCATGTAAAGTAAAAATGACAACTTTCATATACATAGGTTGAATGGTACAGCTTCTCTTTACATTAGCTTCCCGAGTTACAACCTCTACCCTTGTGTAGGTACAAGTCGGTGATTAAAGTGCAGAACAActtccccaatacaggaatccagcttcggaaaatatctgtgctggaaaacttgcaatggaggaatggaagacttgagaaagggagggctgggaaacaagagctgtgactcaccctgaagacattcgtaaatatctattttaatatctattacaatacagcaataaaggcaaactaaaaaaggctatacaaggcattttgcacatcttcatgtactgggttctctgaagcccatttcctgttaatatcttttgctggaagaatcttctcaggatctccccttctgtctgttccaaccagactcccgtacattcattttcgttcctcgtgggtaataca-----cccactgagagacatgttcctttgC---TTTTTTTTTTCTTCTTAGGGGGTTTCTCCACAAGATTCCTGGTTGAGTTGATGGAGTGAAAGTCTGTCTG s panTro4.chr1_AACZ03149435_random 127706 1087 + 173505 CACACAGGGAGAAGTATCCGGGTGTGAGGTCAGATGCATGCACATTTCTCAGTGATG-TGACTACACACTGTGAACTCTGAGACTGACGCTTTCTCCATAGTGAGGAAAAAGACCTTGTTGAAAAATGCCAGAGTACTATCTTGGAACCCCAGAGTATTCGCATGACTCAAATATCAAGGGCTGTTTTTTTTT---------TCCTCCCCAAAATGGCTTAGAAAAC--AAAATGTATGGATCTGATTGTCTCTTATACAAAGGCATGTTAGAGTTTGTAACCTGTGTAAATGCTGTAATTAAAACCTTGTTTTTACATGGATTCATTATGTTAAATTCTTCAGTAATTACTGACATTTTCTTTAATGTGTACATGTGGCGAACATAAGAATATGATTAGCTCAAGTTAAAAGTGTAAGCAGTAATGAGCATATTATGGGTCTCCCTTTGT----CTTTGGTCACTCTAAGCTTCTTGACAATAAAGCTTGACTTTTTATAGATTTGCTGCACTATGCAATTTTCTGTAAGCAAATAAATGCATGTAAAGTAAAAATAACAACATTCATATACATATGTTGAATGGTACAGCTTCTCTTTACATTAGCTCCCCGAGTTACAACCTCTCCCCTTGTGTAGGTACAAGTCAGTGATTAAAGTGCAGAACAActtccccaatacaggaatccagcttctgaaaatatctgtgctggaaaacttgcaatggaggaatggaagacttgagaaagggagggctgggaaacaagagctgtgactcaccctgaagacattcgtaaatatctattttaatatctattacaatacagcaataaaggcaaactaaaaaaggctgtacaaggcattttgcacatcttcatatactgggttctctgaagcccatttcctgttaatatcttttgctggaagaatcttctcaggatctccccttctgtctgttccaaccagactcccatacattcattttcgttcctcgtgggtaataca-----cccactgagagacatgttcctttgCTTTTTTTTTTTTTCTTCTTAGGGGGTTTCTCCACAAGATTCCTGGTTGAGTTGATGGAGTGAAGGTCTGTCTG i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chr2a 107072172 1083 + 113028656 CACACAGGGAGAAGTATCCCAGTGTGAGGTCAGATGCATGCACATTTCTCAGTGATG-TGACTACACACTGTGAACTGTGAGACTGACCCTTTCTCCATAGTGAGGAAAAAGACCTTGTTGAAAAATGCCAGAGTACTATCTTGGAACCCCAGAGTATTAGCATGACTCAAGTATCAAGGGCTGTTTTTTTTT---------C-CTCCCCAAAATGGCTTAGAAAAC--AAAATGTATGGATCTGGTTGTCTCTTATACAAAGGCACATTCGAGTTTGTAACCTGTGTAAATGCCGTAATTAAAACCTTGTTTTTACATGGATTCATTATGTTAAATTCTTCAGTAATTACTGACATTTTCTTTAATGTGTACATGTGGCGAACATAAGAATATGATTAACTCGAGTTAAAAGTGTAAGCAGTAATGAGCATATTATGGGTCTCCCTTTGT----CTTTGGTCACTCTAAGCTTCTTGACAATAAGGCTTGACTTTTTATAGATTTGCTGCACCAAGCAATTTTCTGTAAGCAAATAAATGCATGTAAAGTAAAAATGACAACATTCATATACATATGTTGAATGGTACAGCTTCTCTTTACATTAGCTCCCTGAGTTACAACCTCTCCCCTTGTGTAGGTACAAGTCAGTGATTAAAGTGCAGAACAACTTCCCCAACACAGGAATCCAGCTTCTGAAAATATCTGTGCTGGAAAACTTGCAATGGAGGAATGGAAGACTTGAGAAAGGGAGGGCTGGGAAACAAGAGCTGTGACTCACCCTGAAGACATTCATAAATATCTATTTTAATATCTATTACAATACAGCAATAAAGGCAAACTAAAAAAGGCTATACAAGGCATTTTGCACATCTTCATGTACTGGGTTCTCTGAAGCCCATTTCCTGTTAATATCTTTTGCTGGAAGAATCTTCTCAGGATCTCCTCTCCTGTCTGTTCCAACCAGATGCTCGTAGATTCATTTTCGTTCCTCGTGGGTAATACA-----CCCACTGACAGACATGTTCCTTTGC---TTTTTTTTTCTTCCGAGGGAGGTTTCTCCACAAGATTCCTGGTTGAATTGATGGAGTGAAGGTCTGTCTG i ponAbe2.chr2a C 0 C 0 s rheMac3.chr13 133321679 1080 - 137160470 CACACAGGGAGAAGTATCCCAGTGTGAGGTCAGA-GCATGCACATTTCTCAGTGATG-TGACTACACACTGTGAACTGTGAGACTGACCCTTTCTCCATAGCGAGGAAAAAGACCTTGTTGAAAAATGCCAGAATACTATCTTGGAACCCGAGTGTATTAGCATGACTCAAATATCAAAGGCTGTTTTTTTTT---------T-CTCCCCAAAATGGCTTAGAAAAC-AAAAAAGTATGGAACTGATTGTCTCTTATACAAAGGCAAGTTAGAGTTTGTAACCTGTGTAAATGCTGTAATTAAAACCTTGTTTTTACATGGATTCATTATGTTAAATTCTTCACTAATTACTGACATTTTCTTTAATGTGTACATGTGGGGAACATAAGAATATGATTATCTCGAGTTAAAAGTGTAAGCAGTAATGAGCATATTATGGGTTTCCCTTTGT----CCTTGGTCACTCTAAGCTTCTTGACAATAAGGCTTGAC-TTTTATAGATTTGATGCTCTATGCAATTTTCTGTAAGCAAATAAATGCATGTAAAGTAAAAATGACAACATTCATATACACATGTTGAGTGGTACAGCTTCTCTTTACATTAGCTACCCCAGTTACAACTTCTTCCCTTGTGTAGGTACAAGTCGGTGATTAAAGTGCAGAACAACTTCCCCAACACAGGAATCCGGCTTCAGAAAATATCTGTGCTGGAGAACTTGCAGTGGAGGAATGGAAGCCTtgagaaagggagggctgggaaacaagagctgggactcaccctgaagacactcataaatatcaattttaatatctattacaatacaacaataagggcaagctaaaaaaggctatacaaggcattttgcatatcttcatgtcctgggttctctgaagcccttttcctgttaatatcttttgccagaagaatcttctcaggatctcctctcctgtctgttccaaccagatgctcgtacattcattttggttcctcatgggtcatata-----cccactgagagacaCGTTCCTTTGG-----TTTTCTTTCTTCCGAGAAGGTTTCTCCACAAGATTCCTGGTTGAATTGATGGAGTGAAGGTCTGTCTG i rheMac3.chr13 I 2 C 0 s macFas5.chr13 105401668 1080 + 111193037 CACACAGGGAGAAGTATCCCAGTGTGAGGTCAGA-GCATGCACATTTCTCAGTGATG-TGACTACACACTGTGAACTGTGAGACTGACCCTTTCTCCATAGCGAGGAAAAAGACCTTGTTGAAAAATGCCAGAATACTATCTTGGAACCCGAGTGTATTAGCATGACTCAAATATCAAAGGCTGTTTTTTTTT---------T-CTCCCCAAAATGGCTTAGAAAAC-AAAAAAGTATGGAACTGATTGTCTCTTATACAAAGGCAAGTTAGAGTTTGTAACCTGTGTAAATGCTGTAATTAAAACCTTGTTTTTACATGGATTCATTATGTTAAATTCTTCACTAATTACTGACATTTTCTTTAATGTGTACATGTGGGGAACATAAGAATATGATTAGCTCGAGTTAAAAGTGTAAGCAGTAATGAGCATATTATGGGTTTCCCTTTGT----CCTTGGTCACTCTAAGCTTCTTGACAATAAGGCTTGAC-TTTTATAGATTTGATGCTCTATGCAATTTTCTGTAAGCAAATAAATGCATGTAAAGTAAAAATGACAACATTCATATACACATGTTGAGTGGTACAGCTTCTCTTTACATTAGCTACCCCAGTTACAACTTCTTCCCTTGTGTAGGTACAAGTCGGTGATTAAAGTGCAGAACAActtccccaacacaggaatccggcttcagaaaatatctgtgctggagaacttgcagtggaggaatggaagccttgagaaagggagggctgggaaacaagagctgggactcaccctgaagacactcataaatatcaattttaatatctattacaatacaacaataagggcaagctaaaaaaggctatacaaggcattttgcatatcttcatgtcctgggttctctgaagcccttttcctgttaatatcttttgccagaagaatcttctcaggatctcctctcctgtctgttccaaccagatgctcgtacattcattttggttcctcatgggtcatata-----cccactgagagacaCGTTCCTTTGG-----TTTTCTTTCTTCCGAGAAGGTTTCTCCACAAGATTCCTGGTTGAATTGATGGAGTGAAGGTCTGTCTG i macFas5.chr13 I 2 C 0 s papAnu2.chr13 123111668 1081 - 128036923 CACACAGGGAGAAGTATCCCAGTGTGAGGTCAGA-GCATGCACATTTCTCAGTGATG-TGACTACACACTGTGAACTGTGAGACTGACCCTTTCTTCATAGCGAGGAAAAAGACCTTGTTGAAAAATGCCAGAATACTATCTTGGAACCCGAGTGTATTAGCATGACTCAAATATCAaaggctgttttttttt--------cc-ctccccaaaatggcttagaaaac-aaaaaagtatggAACTGATTGTCTCTTATACAAAGGCAAGTTAGAGTTTGTAACCTGTGTAAATGCTGTAATTAAAACCTTGTTTTTACATGGATTCATTATGTTAAATTCTTCACTAATTACTGACATTTTCTTTAATGTGTACATGTGGGGAACATAAGAATATGATTAGCTCGAGTTAAAAGTGTAAGCAGTAATGAGCATATTATGGGTTTCCCTTTGT----CCTTGGTCACTCTAAGCTTCTTGACAATAAGGCTTGAC-TTTTATAGATTTGATGCTCTATGCAATTTTCTGTAAGCAAATAAATGCATGTAAAGTAAAAATGACAACATTCATCTACACATGTTGAGTGGTACAGCTTCTCTTTACATTAGCTACCCCAGTTACAACTTCTTCCCTTGTGTAGGTACAAGTCGGTGATTAAAGTGCAGAACAACTTCCCCAACACAGGAATCCGGCTTCAGAAAATATCTGTGCTGGAGAACTTGCAGTGGAGGAATGGAAGACTTGAGAAAGGGAGGGCTGGGAAACAAGAGCTGGGACTCACCCTGAAGACACTCATAAATATCAATGTTAATATCTATTACAATACAACAATAAGGGCAAGCTAAAAAAGGCTATACAAGGCATTTTGCATATCTTCATGTCCTGGGTTCTCTGAAGCCCTTTTCCTGTTAATATCTTTTGCCAGAAGAATCTTCTCAGGATCTCCTCTCCTGTCTGTTCCAACCAGATGCTCATACATTCATTTTGGTTCCTCATGGGTCATATA-----CCCACTGAGAGACAcgttcctttgc-----ttttctttcttccgaGAAGGTTTCTCCACAAGATTCCTGGTTGAATTGATGGAGTGAAGGTCTCTCTG i papAnu2.chr13 I 1174 C 0 s chlSab2.chr14 102050934 1086 + 107702431 CACACAGGGAGAAGTATCCCAGTGTGAGGTCAGA-GCATGCACATTTCTCAGTGATG-TGA-TACACACTGTGAACTGTGAGACTGACCCTTTCTCCACAGCGAGGAAAAAGACCTTGTTGAAAAATGCCAGAATACTATCTTGGAACCCGAATGTATTAGCATGACTCAAATATCAAAGGCTGTTTTTTTTT--TTTTTTTC-CTCCCCAAAATGGCTTAGAAAAC-AAAAAAGTATGGAACTGATTGTCTCTTATACAAAGGCAAGTTAGAGTTTGTAACCTGTGTAAATGCTGTAATTAAAACCTTGTTTTTACATGGATTCATTATGTTAAATTCTTCACTAATTACTGACATTTTCTTTAATGTGTACATGTGGGGAACATAAGAATATGATTAGCTCGAGTTAAAAGTGTAAGCAGTAATGAGCATATTATGGGTTTCCCTTTGT----CCTTGGTCACTCTAAGCTTCTTGACAATAAGGCTTGAC-TTTTATAGATTTGGTGCTCTATGCAGTTTTCTGTAAGCAAATAAATGCATGTAAAGTAAAAATGACAACATTCATATACACATGTTGAGTGGTACAGCTTCTCTTTACATTAGCTACCCCAGTTACAACTTCTTCCCTTGTGTAGGTACAAGTCGGTGATTAAAGTGCAGAACAActtccccaacacaggaatctggcttcagaaaatatctgtgctggagaacttgcagtggaggaatggaagacttgagaaagggagggctgggaaacaagagctgggactcaccctgaagacactcataaatatcaattttaatatctattacaatacaacaataagggcaagctaaaaaaggctatacaaggcattttgcatatcttcatgtcctgggttctctgaagcccttttcctgttaatatcttttgccagaagaatcttctcaggatctcctctcctgtctgttccaaccagatgctcgtacattcattttggttcctcatgggtcatata-----cccactgagagacaCGTTCCTTTGC-----TTTTCTTTCTTCCGAGAAGGTTTCTCCACAAGATTCTTGGTTGAATTGATGGAGTGAAGGTCTGTCTG i chlSab2.chr14 I 2 C 0 s calJac3.chr14 5660343 1070 - 108792865 CACACAGGAAGAAGTTTCCCAGCATGAGGTCAGA----CACACATTTCTCCATGATG-TAACTACACATTGTAAACTGTGAGACGGACCCTTTTTCCATAGCGAGAAAGGAGACCTCGTTGAAAAATCCCAGACTACTATGTTGGAACCCAAATGTATTGGCATGAATCAAATATCAAAGGCTGTTTTTTTATTTTTTTTTCT-CTCCCCAAAATGGCTTAGAAAACAAAAAAAGTATGGATCTGATTGTCTCTTATACAAAGGCAAGTTAGAATTTGTAACCTGTGTAAATGCTATAATTAAAACCTTGTTTTTACATGGATTCCTTAGGTTAAATTCTTCACTAATTACTGACGTTTTCTTTAATGTGTACATGTGGGAAGCATACGGATATGGTTAAC------------------CAGTAATGAGCATATTATGGGTTTCCCTTCGT----CTTTGGTCAGTCTAAACTTCTTGACAATAAGGCCTAACTTTTTATAGATCTGGTGCACTATGCAATTTTCTGTAAGC----AGATTCATGTAAAGTAAAAATGACACCATTCATATACACATA-TGAATGGTACAGCTTCTCTTCACATTAGCTCTCCTGGTTACAACCTCTCCCCTTGCGTAGGGACAAGTCAGTGATGAAAGTGAAGAACAACCTCCCCAATACTGGAATCCGGCTTCTGAAAATACCTGCACTGGAAAACTTGCAATGGAGAAATGGAAGACTTGGGAAGGAGAGGGCTGGGAAACGAGAGTTGTAACTCACCCTGAAGACACTCATAAGCATCAACTTTAATATCTATTAAAATACAACGATAAAGGCAAACTAAAACAGGCCATACAAGGCATTTTGCACATCTTAATGTGCTGAGTTCTCTGAAGCCCATTTCCTGTTAATATCTTTTGTCGGGAGAACCTTCTCAGGAACTCCTCTCCTGACTGGTCCAACCAAATGCTCGTACATTCACTTTGCTTCCTCATGGGTAGTATACCACGCCCACCTAGAGACATGTTTCCTTTG-----CTTTTCTTCTTCTGAAGGGGTTTCTTCATAAGATTCCTGGTTGAATTGATGGTGTGAAGGTCTGTCTG i calJac3.chr14 I 2 C 0 s canFam3.chr17 60749287 985 - 64289059 CATGTAGGAAGAAGTACTCGGGTATGGAGTCATA----TGCGTATTTTTCCATGATGATGGTTATACACAATGAACTATAAGAATAACCCTCCCTCCCCAACAAGGAATGAGATCTGCTTGAAAAATGCCAGAACACCATCCTGGAACCCAAGTGTATGATCATGACTCAAATATCAAAGCCTCATTTTTTTT---------C-TTCCCTAAAATAGCTTTAAAAAA-AATAAAGTATGGATCTGATTGTCTCTTATACAAAAGCAAGTTGGAATTTGTAACCTGTGTAAATGCTGTAATTAAAACCTTGTTTTTACATGGATTCATTATGTTAAATTTTCCACTAATTACTGACATTTTCTTTAATGTGTACATGCAGGGAACATGAGGATATGATTAGCTGGAGTTAAAAGTGTAAGCAGTAATGAGCATATTATGGGTTTCCCTTTGTCTTCCTTTGGGCACTTGAAGGTTCTTGACAAT-AGGTCTGCCTTTTTATAGGGTTAGTGCTCTGCACAATTTTCTGTAAACAAATACATGCATG-AAAGTAAAACTGACAACATTCATATACACAAGTTGGAT-GTATTGCTTCCCTTTACGTTACCTTTCT-AGTGACAGGCTCTTTTCTTGTGTAGATACAAGCACCCCATTAAAGGACAGGA-GACTTCCCTGATGCAGGAATGGGGTTTCTGAAAGTCTCGG-GCTGGGACATCCGCAGTCAAGAAACTGAAGACACAGGGGAAGGAGGAATG-----TAAGAG---------ACCCT----------------------------------------------ACAAGG--------------------CACGGCACGCTGCACAGCCCAGTTCACTGAGTTCCTTGACGCTTATGACCAACGAACATGTTttactggaaaaatcttctccagatctccctctcccactgttgcaaccagatgtttatccgttcattttgcttctttgcagataataca-----cacactgagagacgtatttcctttg-----ctttgtttctccTGGG------------CCTGGCTTTTTGTTGAGCTGGTGGTTTGGAGGCCCGCCTG i canFam3.chr17 C 0 C 0 e nomLeu3.chr19 76401121 491 - 81552678 I a score=193228.000000 s hg38.chr1_KI270765v1_alt 23494 112 + 185285 TCCCCCAA---ttttttttttttttttttttggagacagagtctcactctattccgcaggctggagtgcagtggcactatctcagcttactgcaacttccggctcttgggttcaa s panTro4.chr1_AACZ03149435_random 128793 115 + 173505 TCCCCCAAtttttttttttttttttttttttggagacagagtctcactctatcccgcaggctggagtgcagtggcgctatctcagcttactgcaacttccagctcttgggttcaa i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chr2a 107073255 107 + 113028656 TCCCCTAC--------TTAttttttttttttggagacagagtctcactctatcccacaggctggagtgcagtggcgctatctcagcttactgcaacttcctgctcttgggctcaa i ponAbe2.chr2a C 0 C 0 s rheMac3.chr13 133322759 104 - 137160470 TCCCCCAG-----------ttttttttatttggaggcagagcctcactctttcccacaggctagagtgcagtggtgccatcttggctcactgcaacctccggctcttgggttcaa i rheMac3.chr13 C 0 C 0 s macFas5.chr13 105402748 104 + 111193037 TCCCCCAG-----------ttttttttatttggagacagagcctcactctttcccacaggctagagtgcagtggtgccatcttggctcactgcaacctccggctcttgggttcaa i macFas5.chr13 C 0 C 0 s papAnu2.chr13 123112749 108 - 128036923 tcccccag-------tttttttttttttttttgagacagagtctcactctttcccacaggctagagtgtagtggtgccatcttggctcactgcaacctccgactcttgggttcaa i papAnu2.chr13 C 0 C 0 s chlSab2.chr14 102052020 102 + 107702431 TCCCCCAG-----------ttttttt--tttggagacagagtctcactttttcccacaggctagagtgcagtggtgccatgttggctcactgcaacctccggctcttgggttcaa i chlSab2.chr14 C 0 C 0 s calJac3.chr14 5661413 105 - 108792865 CCACCttt-gcttttatttattttttttttttgagacagagtcttgctctgtaccctaggctggagtgccctggtgtgatcgtggctcactgcaacctc---------agttcaa i calJac3.chr14 C 0 C 0 e canFam3.chr17 60750272 0 - 64289059 C e nomLeu3.chr19 76401121 491 - 81552678 I a score=30650.000000 s hg38.chr1_KI270765v1_alt 23606 11 + 185285 gcaattctcat s panTro4.chr1_AACZ03149435_random 128908 11 + 173505 gcaattctcat i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chr2a 107073362 11 + 113028656 gcaattctcat i ponAbe2.chr2a C 0 C 0 s rheMac3.chr13 133322863 11 - 137160470 gcaattctcat i rheMac3.chr13 C 0 C 0 s macFas5.chr13 105402852 11 + 111193037 gcaattctcat i macFas5.chr13 C 0 C 0 s papAnu2.chr13 123112857 11 - 128036923 gcaattctcat i papAnu2.chr13 C 0 C 0 s chlSab2.chr14 102052122 11 + 107702431 gcaattctcat i chlSab2.chr14 C 0 C 0 s calJac3.chr14 5661518 11 - 108792865 gcgattcttac i calJac3.chr14 C 0 C 0 s canFam3.chr17 60750272 11 - 64289059 ACAACTCTGAT i canFam3.chr17 C 0 C 0 e nomLeu3.chr19 76401121 491 - 81552678 I a score=384525.000000 s hg38.chr1_KI270765v1_alt 23617 171 + 185285 acctcagcctcccgagtagctgggattacagacgtgcaccaccatgcctggctaatttttgtatttttagtagagacatggtttcaccatgttggccagggtggtctcgaactcctgacctcaggtgatccgcctgccttgggctcccaaagtgctgggattacaggcgtg s panTro4.chr1_AACZ03149435_random 128919 171 + 173505 acctcagcctcccgagtagctgggattacagacgtgcaccaccatgcctggctaatttttgtatttttagtagagacatggtttcaccatgttggccaggctagtctcgaactcctgacctcaggtgatccgcctgcctggggctcccaaagtgctgggattacaggcgtg i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chr2a 107073373 171 + 113028656 gcctcagcctcccgagtagctgggattacaggcgtgcaccaccatgcctggctaatttttgtatctttggtagtgacgtggtttcaccatgttggccaggctggtctcgaacacctgacctcaggtgatccgcctgccttgggctcccaaagtgctgggatggcaggcgtg i ponAbe2.chr2a C 0 C 0 s rheMac3.chr13 133322874 168 - 137160470 gcctcagcctccctagtaggtgggattacaggcatgcaccaccatgcctggctcatttttatatttttagtagagacggggtttcacca---tgaccagactggtcttgaactcctgacctcaggtgatccggttgccttgggttcccaaagtgctgggattccgggcatg i rheMac3.chr13 C 0 C 0 s macFas5.chr13 105402863 168 + 111193037 gcctcagcctccctagtaggtgggattacaggcatgcaccaccatgcctggctaatttttatatttttagtagagacggggtttcacca---tgaccagactggtcttgaactcctgacctcaggtgatctgcttgccttgggttcccaaagtgctgggattacaggcatg i macFas5.chr13 C 0 C 0 s papAnu2.chr13 123112868 171 - 128036923 gcctcagcctccctagtagctgggattacaggcatgcaccaccatgcctggctaatttttatatttttagtagagacggggtttcaccatgttggccagactggtcttgaactcctgaccttaggtgatccacctgccttgggctcccaaagtgctgggattacaggcatg i papAnu2.chr13 C 0 C 0 s chlSab2.chr14 102052133 171 + 107702431 gcctcagcctccctagtagctgggattacaggcatgcaccaccatgcctggctaatttttatatttttagtagagacggggtttcaccatgttggccagactggtcttgaactcctgaccttaggtgatccacctgccttgggctcccaaagtgctgggattacaggcatg i chlSab2.chr14 C 0 C 0 s calJac3.chr14 5661529 165 - 108792865 acctcagcctcctgagtagctgggattacaggcatgcaccaccatatccagctaatttttgtatttttagtagagacggggtttcaccatgttggccaggctgatct------cctgacctcaggtgatccacctgccttggcctcccaaagtgctgggattacaggtgtg i calJac3.chr14 C 0 C 0 e canFam3.chr17 60750283 0 - 64289059 C e nomLeu3.chr19 76401121 491 - 81552678 I a score=1689658.000000 s hg38.chr1_KI270765v1_alt 23788 696 + 185285 agccactgtgcctggccTGTCTGCCACCTTTGATGGACAGTGTGACTACAGGGACAGAGGAAGATTCCCCAAAGACCTGCACTCACCCCCTCTAATGCATGT-CCA----------------GACATCGTCTGGCTCTCAGCACTCCCCTCCATTGCCCAAAGCCCTTTTGCAGGACCTCTGCCT-GTTCTGCCTGCTTTGTGCTTTGTTTTGTTGCATTTTAtttccttttctttcctgtttctaacccagtcatctc-tttttctagttattcccaacctatataactcacatgcactggaggaaatatcttcatggaattaaaaccacatggagtaacatttcacgtaagcagaattca-ggaaggattTCAGTAATTCCATCCCAAACACACACAGGCAAAGGGAGTGAAGATTTCTTCAGCAACATGGTGGCAGAAAG---ATCATGAAAAGATCTAGGCCAGGCAAGT-ATGCAAACAAGACTGACTCTTCCTTTCCACTGGAGCTTTGGGTAATTGCTCTGACAATTCTATGATTTGCTGAAGCCACAGAAAATCAGTTTTAAAACAGGATTTCTACCCCTGGCTCACTACATGACAAATAATTTTATCCTGTAATCTTCTGATGTTAAACAAAGATGGCCCTCAATGTAATTGTTACAGTGCCTC----CTCCCCACTTCTGTTAGCTGTTGCTTCTCTGCCTCCCATGAGTTTAG s panTro4.chr1_AACZ03149435_random 129090 696 + 173505 agccactgtgcctggccTGTCTGCTACCTTTGATGGACAGTGTGACTACAGGGACAGAGGAAGATTCCCCAAAGACCTGCACTCACCCCCTCTAATGCATGT-CCA----------------GACATCGTCTGGCTCTCAGCACTCCCCTCCATTGCCCAAAGCCCTTTTGCAGGACCTCTGCCT-GTTCTGCCTGCTTTGTGCTTTGTTTTGTTGCATTTTAtttccttttctttcctgtttctaacccagtcatctc-tttttctagttattcccaacctatataactcacatacactggaggaaatatcttcatggaattaaaatcacatggagtaacatttcacgtaagcagaattca-ggaaggattTCAGTAATTCCATCCCAAACACACACAGGCAAAGGGAGTGAAGATTTCTTCAGCAACATGGTGGCAGAAAG---ATCATGAAAAGATCTAGGCCAGGCAAGT-ATGCAAACAAGACTGACTCTTCCTTTCCACTGGAGCTTTGGGTAATTGCTCTGACAATTCTATGATTTGCTGAAGCCACAGAAAATCAGTTTTAAAACAGGATTTCTACCCCTGGCTCACTACATGACAAATAATTTTATCCTGTAATCTTCTGATGTTAAACAAAGATGGCCCTCAATGTAATTGTTACAGTGCCTC----CTCCCCACTTCTGTTAGCTGTTGCTTCTCTGCCTCCCATGAGTTTAG i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chr2a 107073544 712 + 113028656 agccaccgtgcctggccTGTCTGCCACCTTTGATGGACAGTGTGACTACAGGGACAGAGGAAGGTTCCCCAAAGGCCTGCACTCACCCCCTCTAATGCATGT-CCAGGCCCCGTCCTGAGATGGCATCGTCTGGCTCTCAGCACTCCCCTCCATTGCCCAAAGCCCTTTTGCAGGACCTCTGCCT-GTTCTGCCTGCTTTGTGCTTTGTTTTGTTGTATTTTATTTCCTTTTCTTTCCTGTTTCTAACCCGGTCATCTC-TTTTTCTAATTATTCCCAACCTATATAACTCACATACACTGGAGGAAATATCTTCATGGAATTAAAAACACATGGAGTAACATTTCACATAAGCAGAATTCA-GGAAGGATTTCAGTAATTCCATCCCAAACACACACAGGCAAAGGGAGTGAAGATTTCTTCAGCAACCTGGTGGCAGAAAG---ACCATGAAAAGATCCAGGCCAGACAAGT-ATGCAAACAAGACTGACTCTTCCTTTCCACTGGAGCTTTGGGTAATTGCCCTGACAATTCTGTGATTTGCTGAAGCCACAGAAAATCAGTTTTAAAACAGGATTTCTACCCTTGGCTCACTACATGACAAATAATTTTATCCTGTAATCTTCTGATGTTAAACAAAGATGGCCCTCAATGTAATTGTTACAGTGCCTC----CTCCCCACCTCTGTTAGCTGTTGCTTCTCTGCCTCCCATGAGTTTAG i ponAbe2.chr2a C 0 C 0 s rheMac3.chr13 133323042 700 - 137160470 agccaccacgcccagccTGTCTGCCACCTTTGATGGACAGTGTTACTACAGGGACAGAGGAAGA-TTCCCAAAGACCTGCAGTCATCCTGTCTAATGCATGT-CCAGGCTCCCTTCTGAGACAGCATTGCCCGGCTCTCAGCACTCCCCTCCATTGCCCAAAGCCCTTTTGCAGGACCTCTGCCT-GTTCTCCCTGGTTTGTGCCTTGTTTTGTTGTATTTTA----------TTTCCTGTTTCTAACCCAGTCATCTCTTTTTTCTAATTATTCCCAACCTATATAACTCACATACACTGGAGGAAATATCTTCATGGAATTAAAACCACATGGAGCAATGTTTCACATAAGCAGAATTCA-GGAAGGACTTCAGTAATCCCACCCCAA--ACACACAGGCAAAGGGAGTGCAGATTTCTTCAGCAACATGGTGGCAGCAAG---GCCATGAAAAAATCCGGGCCAGACGAGT-GTGCAAGCACAACTGCCTCTTCCTTTCCACTGGAGTTTTGGGTAACTGCTCTGACAATACTGTGATTTGCTGAAGCCACAGATAATCAGTTTCAAAACAAGATTTCTACCCCTGGCTCACTACATCACAAATAACTGTGTCTTGTATTCTTCTGATGTTAAACAAAGATGGCCCTCAATGTAATTGTTAGAGTGCCTC----CTCCCCACTTCTGTCAGTTGTTGCTTCTCTGCCTGCCATGAGTTTAG i rheMac3.chr13 C 0 C 0 s macFas5.chr13 105403031 699 + 111193037 agccaccacgcccagccTGTCTGCCACCTTTGATGGACAGTGTTACTACAGGGACAGAGGAAGA-TTCCCAAAGACCTGCAGTCATCCTGTCTAATGCATGT-CCAGGCTCCCTTCTGAGACAGCATTGCCCGGCTCTCAGCACTCCCCTCCATTGCCCAAAGCCCTTTTGCAGGACCTCTGCCT-GTTCTCCCTGGTTTGTGCCTTGTTTTGTTGTATTTTA----------TTTCCTGTTTCTAACCCAGTCATCTC-TTTTTCTAATTATTCCCAACCTATATAACTCACATACACTGGAGGAAATATCTTCATGGAATTAAAACCACGTGGAGTAATGTTTCACATAAGCAGAATTCA-GGAAGGACTTCAGTAATCCCACCCCAA--ACACACAGGCAAAGGGAGTGCAGATTTCTTCAGCAACATGGTGGCAGCAAG---GCCATGAAAAAATCCGGGCCAGACGAGT-GTGCAAACACAACTGCCTCTTCCTTTCCACTGGAGTTTTGGGTAACTGCTCTGACAATACTGTGATTTGCTGAAGCCACAGATAATCAGTTTCAAAACAAGATTTCTACCCCTGGCTCACTACATCACAAATAACTGTGTCTTGTATTCTTCTGATGTTAAACAAAGATGGCCCTCAATGTAATTGTTAGAGTGCCTC----CTCCCCACTTCTGTCAGTTGTTGCTTCTCTGCCTGCCATGAGTTTAG i macFas5.chr13 C 0 I 1243 s papAnu2.chr13 123113039 699 - 128036923 agccaccacgcccagcctgtctGCCACCTTTGATGGACAGTGTTACTACAGGGACAGAGGAAGA-TTCCCAAAGACCTGCAGTCATCCTGTCTAATGCATGT-CCAGGCTCCCTTCTGAGATGGCATTGCCCGGCTCTCAGCACTCCCCTCCATTGCCCAAAGCCCTTTTGCAGGACCTCTGCCT-GTTCTCCCTGgtttgtgctttgttttgttgtatttta----------tttcctgtttctaaCCCAGTCATCTC-TTTTTCTAATTATTCCCAACCTATATAACTCACATACACTGGAGGAAATATCTTCATGGAATTAAAACCACATGGAGTAATATTTCACATAAGCAGAATTCA-GGAAGGACATCAGTAATCCCATCCCAA--ACACACAGGCAAAGGGAGTGAAGATTTCTTCAGCAACATGGTGGCAACAAG---GCCATGAAAAAATCCGGGCCAGACGAGT-GTGCAAACACAACTGCCTCTTCCTTTCCACTGGAGCTTTGGGTAACTGCTCTGACAATACTGTGATTTGCTGAAGCCACAGATAATCAGTTTCAAAACAAGATTTCTACCCCTGGCTCACTACATCACAAATAACTGTGTCTTGTAATCTTCTGATGTTAAACAAAGATGGCCCTCAATGTAATTGTTAGAGTGCCTC----CTCCCCACTTCTGTCAGTTGTTGCTTCTCTGCCTGCCATGAGTTTAG i papAnu2.chr13 C 0 I 1243 s chlSab2.chr14 102052304 700 + 107702431 agccaccacgcccagccTGTCTGCCACCTTTGATGGACAGTGTTACTACAGGGACAGAGGAAGATTTCCCAAAGACCTGCAGTCATCCTGTCTAATGCATGT-CCAGGCTCCCTCCTGAGACGGCATTGCCCGACTCTCAGCACTCCCCTCCATTGCCCAAAGCCCTTTTGCAGGACCTCTGCCT-GTTCTCCCTGGTTTGTGCTTTGTTTTGTTGTATTTTA----------TTTCCTCTTTCTAACCCAGTCATCTC-TTTTTCTAAGTATTCCCAACCTATATAACTCACATACACTGGAGGAAATATCTTCATGGAATTAAAACCACATGGAGTAATATTTCACATAAGCAGAATTCA-GGAAGGACTTCAGTAATCCCGTCCCAA--ACACACAGGCAAAGGGAGTGAAGATTTCTTCAGCAACATGGTGGCAGCAAG---GCCATGAAAAAATCCAGGTCAGACAAGT-GTGCAAACACAACTGACTCTTCCTTTCCACTGGAGCTTTGGGTAACTGCTCTGACAATACTGTGATTTGCTGAAGCCACAGATAATCAGTTTCAAAACAAGATTTCTACCCCTGGCTCACTACATCACAAATAACTGTGTCTTGTAATCTTCTGATGTTAAACAAAGATGGCCCTCAATGTAATTGTTAGAGTGCCTC----CTCCCCACTTCTGTCAGCTGTTGCTTCCCTGCCTGCCATGAGTTTAG i chlSab2.chr14 C 0 I 1242 s calJac3.chr14 5661694 706 - 108792865 aaccactatgtccagccTGTCTGC-ACCTTTGTTGAACAGTATGATCACA-GGACAGAGGATGATTTCCCAATAACCTTCATCCATCCCTTCTAATGCATGT-CCAGGCTGCCTCCTGAGATGGCCTAGCCTGGCTCTCAGCGCTCCCCTCTCTTTCCAAAATCCCTTTTGAAGGACCTCTGCCT-TTTCTGCCTGCTTTGTGCTTCATGTCCTTGTATTTGATTTACTTTTCTTTCCTGTTTCTAACCAACTCATTTC-TTTTTCTGATTATTCCCAACCTATGTCACTTACATATACTGGAGTAAATATCTTCATGGAATTAAAACCACATGGAGCAACATTTCACAT-AGTAGAATTCA-GGAAGGATTTCAGCAATCCCATCCCAA--ACACACAGGTAAAGGGAATGAAGATTTCTTCAGCAACATGGTGGCAACAAG---ACCATGAGAAGGTCCAGGCCAGACAAGT-AGGCAAATAAGACTGACTCTTGCTTTCCACTGTAACTTTGTGTAATTGCTCTGACAATTCTGTGATTTGCTGAAGCCACAGATCATCAGTTTTAAAACACAATTTCTACCGCTGGTTCACTACTTCACAAATAATTTTATCCTATAATCTCCCGATGCTAAACAAAGATGG-CCTAAATGTAACTGTTACGGTTCCTC----CTCCCCGCTCCTGTTGGCTGATGCTTCTCTGCCTCCCAAGAGTGTAG i calJac3.chr14 C 0 I 1227 s canFam3.chr17 60750283 641 - 64289059 GGCCAATG------------------------------AGCGAGGCCACAGGGACAGAGGTAGC-CTCCCAGGGATCTGCCCTTGGCCCCAGTGATGCCTGTGTCA--CCCCCTCCTGAGG-GGCA-GGCGGGGGACTCAG-ACCCGtctctcttg----aagcctcattgcaagacctctgcccagcgctgtctgcctcgttgttggttttcttgtctttcacttcctcttttttcctctttctaacccagttatttc-tttttctgattatatccaacatgtgtaagttgaaaacactggaaaaaagatccctatggaattaagaccatgcttactaacatttcacataagcagaattcacTGAAGGATTTCAGTAAGCCCACCTCAGACTCACGCGGGCAAAGGGGACGGAGGTTGC-TCAGGGCCGTGGTGACACAAAGCCCATCATGCCTGGAGCCATGCCTGACATCTCAGGCCTATGAGACCAACTGCTGCTTTTCCCCTGTACTTTGGGCAATCGCTCTGACAATTCTGTGCTTGGCAAAATCCA-AGATCATCGGATTTGAACGAGGATTTCTGCCCCCAGTTCA---------------------------------TATTTCTAAA-------AGCCCTGAGTGGAGTTGTGAAGTTATCCCTCTTCTCTGCACTTCTGATCCCTGTCCTCTTCCTCCCTTCTACGTGTTTTG i canFam3.chr17 C 0 C 0 e nomLeu3.chr19 76401121 491 - 81552678 I a score=6876.000000 s hg38.chr1_KI270765v1_alt 24484 2 + 185285 tg s panTro4.chr1_AACZ03149435_random 129786 2 + 173505 tg i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chr2a 107074256 2 + 113028656 tg i ponAbe2.chr2a C 0 C 0 s rheMac3.chr13 133323742 2 - 137160470 TG i rheMac3.chr13 C 0 I 1243 s macFas5.chr13 105404973 2 + 111193037 tg i macFas5.chr13 I 1243 C 0 s papAnu2.chr13 123114981 2 - 128036923 tg i papAnu2.chr13 I 1243 C 0 s chlSab2.chr14 102054246 2 + 107702431 tg i chlSab2.chr14 I 1242 C 0 s calJac3.chr14 5663627 2 - 108792865 tg i calJac3.chr14 I 1227 C 0 s canFam3.chr17 60750924 2 - 64289059 TG i canFam3.chr17 C 0 I 12 e nomLeu3.chr19 76401121 491 - 81552678 I a score=45927.000000 s hg38.chr1_KI270765v1_alt 24486 18 + 185285 taatcccagaactttggg s panTro4.chr1_AACZ03149435_random 129788 18 + 173505 taatcccagaactttggg i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chr2a 107074258 18 + 113028656 taatcccagcactttggg i ponAbe2.chr2a C 0 C 0 s rheMac3.chr13 133324987 18 - 137160470 taatcctggaactttggg i rheMac3.chr13 I 1243 C 0 s macFas5.chr13 105404975 18 + 111193037 taatcctggaactttggg i macFas5.chr13 C 0 C 0 s papAnu2.chr13 123114983 18 - 128036923 taatcctggaactttggg i papAnu2.chr13 C 0 C 0 s chlSab2.chr14 102054248 18 + 107702431 taatcctggaactttggg i chlSab2.chr14 C 0 C 0 s calJac3.chr14 5663629 18 - 108792865 taatcccagcattttggg i calJac3.chr14 C 0 C 0 s canFam3.chr17 60750938 18 - 64289059 TGGCCCCAGAGCATTAGG i canFam3.chr17 I 12 I 1158 e nomLeu3.chr19 76401121 491 - 81552678 I a score=585963.000000 s hg38.chr1_KI270765v1_alt 24504 278 + 185285 agaccaaggagggcagatcacttgaggtcaggagtcagagaccagcctggccaacacggcgaaaccccatctctactgaaaatacaaaaattagccaggcatggtggcttgcgtctgtaatcccagctacttgagaggctgagacacaagaatcacttgaatccaggaggcagaggttgcagtgagctgagatagtgccactacactccagcctgggagacagagcgagaccctgtctc-----aaaacaacaaaaaacaaaaaCCGAACAAACAAAAACTGT s panTro4.chr1_AACZ03149435_random 129806 278 + 173505 agaccaaggagggcagatcacttgaggtcaggagtcagagaccagccgggccaacatggcgaaaccccatctctactgaaaatacaaaaattagccaggcatggtggcttgcgtctgtaatcccagctacttgagaggctgagacacaagaatcacttgaatccgggaggcagaggttgcagtgagctgagatagtgccactacactccagcctgggagacagagcgagaccctgtctc-----aaaacaacaaaaaacaaaaaCCGAACAAACAAAAACTGT i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chr2a 107074276 278 + 113028656 agaccaaggcgggcagatcacttgaggtcaggagtcagagaccagcctggccaacatggtgaaaccccgtctctactgaaaatacaaaaattagccaggcatggtggcttgcgtctgtaatcccagctacttgagaggctgagacacaagaatcgcttgaatccgggaggcagaggtggcagtgagctgagatcatgccactacactccagcctgggagacacagcgagaccctgtctc-----aaaaaaacaaaaaacaaaaaCCGAACAAACAAAAACTGC i ponAbe2.chr2a C 0 C 0 s rheMac3.chr13 133325005 279 - 137160470 aggccaaggcgggcagatcacttgaggttgggagtcagagcccagcctggccaacatggtgaaatcccgtctctactgaaaatacaaaaataagccaggaatggtgacttgtgtctgtaatcctagctacttgggaggctgagacacaagaatcgcttgaacccaggaggcagaggttgcagtgagctgagaccgtgccactacactccagcctgggagacagagtgagaccctgtcgcaaaaaaaaaaaacaaaaaacaaaa----aacaaaCAAAAACTGC i rheMac3.chr13 C 0 C 0 s macFas5.chr13 105404993 276 + 111193037 aggccaaggcgggcagatcacttgaggttgggagtcagagaccagcctggccaacatggcgaaatcccgtctctactgaaaatacaaaaataagccaggcatggtgacttgtgtctgtaatcctagctacttgggaggctgagacacaagaatcgcttgaacccaggaggcagaggttgcagtgagctgagaccgtgccactacactccagcctgggagacagagtgagaccctgtcgc---aaaaaaaaacaaaaaacaaaa----aacaaaCAAAAACTGC i macFas5.chr13 C 0 C 0 s papAnu2.chr13 123115001 271 - 128036923 aggccaaggcgggcagatcacttgaggttgggagtcagagaccagcctggccaacgtggcgaaatcccgtctctactgaaaatacaaaaataagccaggcatggtgacttgtgtctgtaatcctagctacttgggaggctgagacacaagaatcgcttgaaccca-gaggcagaggttgcagtgagctgagaccgtgccactacactccagcctgagagacagagtgagaccctgtcgc--aaaaaaaaaacaaaacaaaaac----aac-----aaaactac i papAnu2.chr13 C 0 C 0 s chlSab2.chr14 102054266 265 + 107702431 aggccaaggcgggcagatcacttgaggttgggagtcagagaccagcctggccaacatggcgaaatcccgtctctactgaaaatacaaaaataa-ccaggcatggtgacttgtgtctgtaatcctagctacttgggaggctgagacacaagaatcgcttgaacccaggaggcagaggttgcagtgagctgagaccatgccactacactccagcctgggagacagagtgagaccctgtcgcaaaaaaaaaaaaccaaaca-----------------aaaaCTAC i chlSab2.chr14 C 0 C 0 s calJac3.chr14 5663647 265 - 108792865 aggccaaggggtacagatcacttgatgtcaggagttagagaccagcctggccaacatggcaaaaccacgtttctactaaaattacaaaaattagccaggcatggtggcttgcgtctgttatcccagctacttggtaggctgagatacaaaaatcacttgaaccca-gggccagaggttgcagtgagccaagattgtgccactacactccagcctgggagacaga--gagaccttgtctc-----aaaaaaaaaaaaaaaaaaC----ACC------AAACTGC i calJac3.chr14 C 0 C 0 e canFam3.chr17 60750956 1158 - 64289059 I e nomLeu3.chr19 76401121 491 - 81552678 I a score=2357542.000000 s hg38.chr1_KI270765v1_alt 24782 995 + 185285 AATTGCTGAAACGCTCTTTTTCATCAATCA-TATATATTGAACCAGGGTCAC--GAaaacatgggaaaagtgtaatttctgcctctgaggaactcacagtctagtgggagacaCCATTTATTCatccattctttcatgaaatacacattgagaatataacacaccctgggcaaaggagaggtcatttgactatgacacaagacaatagtcatagtctttgccctcatggaattcacagcctagccatggagatt--aaaaataaaaagatctaatagaataaagagtagtagatttaaaaacact-ggaaacccagtgtgcagtaaaactaaaaaagagggctacctaacctagtgtgagaggtgaggtag-ag-gttagggtgagaaaggatggtataggaaggctttctggaaaatttcaagataaatcttgaggataagtcagaattatacaggtgaaaagTAGAATAGTGCTTGCTACCTTGCAATTGTTCAGCAAACATCTGCAATGATTACTAACTGTCTGTCAGTTTTTGGCTCTTCTT--CAATCCTCACAGTCC-AAGCTCACTGCAGTTAAATCTTCAGTCTCCAGCACTGCACTtgggaaagcgtcaaggagttgactgtatatgtaattggagtgccagaagaagagaaccgagagagaggggcagaaCAGCTCATGaggggaaaaccc-actacatacaat-caagaatactgcagactcctcatcggaatctatgtaagtaaga-aaaaaatggccaggaactat--agagctgttctttaaagtacttaaaaaca-tttttgccaacctagaagtctttaaccagcaaaaatgtcttccaaaaagaaa--------aagacttttcagaaca----aatactgagctgattcattattagcacatttgcactacataagtgttaaagaaaatttctttagtaaaagaaatataataccagaaggaaaatttgatctataaa--aaaagaaattaagagtcccagaaatata s panTro4.chr1_AACZ03149435_random 130084 995 + 173505 AATTGCTGAAACGCTCTTTTTCATCAATCA-TATATATTGAACCAGGGTCAC--GAaaacatgggaaaagtgtaatttctgcctctgaggaactcacagtctagtgggagacaCCATTTATTCATCCATTCTTTCACGAAATACACATTGAGAATGTAACACACCCTGGGCAAAGGAGAGGTCATTTGACTATGACACAAGACAATagtcatagtctttgccctcatggaattcacagcctagccatggagatt--aaaaataaaaagatctaatagaataaagagtagtagatttaaaaacact-ggaaacccagtgtgcagtaaaactaaaaaagagggctacctaacctagtgtgagaggtgaggtag-ag-gttagggtgagaaaggatggtataggaaggctttctggaaaatttcaagataaatcttgaggataagtcagaattatacaggtgaaaagTAGAATAGTGCCTGCTACCTTGCAATTGTTCAGCAAACATCTGCAATGATTACTAACTGTCTGTCAGTTTTTGGCTCTGCTT--CAATCCTCACAGTCC-AAGCTCACTGCAGTTAAATCTTCAGTCTCCAGCACTGCACTtgggaaagcgtcaaggagttgaatgtatatgtaattggagtgccagaagaagagaaccgagagagaggggcagaaCAGCTCATGaggggaaaactc-actacatacaaa-caagaatactgcagactcctcatcggaatctatgtaagtaaga-aaaaaatggccaggaactat--agagctgttctttaaagtacttaaaaaca-tttttgccaacctagaagtctttaaccagcaaaaatgtcttccaaaaagaaa--------aaaacttttcagaaca----aatactgagctgattcattattagcacatttgcactacataagtgttaaagaaaatttctttagtaaaagaaatataataccagaaggaaaatttgatctataaa--aaaagaaattaagagtcccagaaatata i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chr2a 107074554 990 + 113028656 AATTGCTGAAACGCCCTTTTTCATCAATCA-TATATATTGGACCAGGGTCAC--CAaaacatgggaaaagtgtaatttctgcctctgagtaactcacagtctagtgggagacaCCATTTATTCatcccttctttcatgaaacacccattgagaacgtaacacaccctggg-agaggagaggtcatttgaccgtgacacaagataatagtcatagtctttgacctcacggaattcacagcctagccatggagatt--aaaaataaaaagatctaatagaataaagagtaatagatttacaaacact-ggaaacccagtatgcagtaaaactgaaaaagagggctacctaacctagtatgagaggtgaggtag-ag-gttagggtgagaaaggatggtataggaaggctttctggaaaatttcaagataaatcttgaggataagtcagaattatacaggtgaaaagTAGAATAGTGCCTGCTACCTTGCAATTGTTCGGCAAACATCTGCAATGATT----ACTGTCTGTCAGTTCTTGGCTCTGCTT--CAATCCTCACAGTCT-AAGCTCACTGCAGTTAAATCTTCAGTCTCCAGCACTGCACTTGGGAAAGCATCAAGGAGTTGaatgtatatgtaattggagtgccagaagaagagaaccgagagagaggggcagaaCAGCTCATGAAGGGAAAaccc-actacatacaaa-caagaatactgcagactcctcatcggaatctatgtaagtaaga-aaaaagtggccagaaactat--agagctgttctttaaagtacttaaaaaca-tttttgccatcctagaagtctttaactagcaaaaatgtcttctgaaaagaag--------gagccttttcagaaca----aatactgagctaattcattattagcacatttgcactacataagtgttaaagaaaatttctttagtaaaagaaatataataccggaaagaaaatttgagctctaag--aaaagaaattaagagtcccagaaatgta i ponAbe2.chr2a C 0 C 0 s rheMac3.chr13 133325284 995 - 137160470 AATTGTTGAAACACTCTTTTTCATCAATCattatatattgggccaggattac--caaaaaatggaaaaagtataatttctgcttctgaggaactcacagtctagtgggagacaCCATTTATTCatccgttctttcatcaaacacccattgagaatgtaatgcaccctggacaaaggagcagtcatttgactatgacacaagataatagtcaaagtctttgccctcacggagttcacagcctagccatggagatt--aaaaataaaaagatataatagaataaagagtaatagattttaaaacact-ggaaacccagcatgtggtaaaactgaaaaagagggatacctaacctagtatgacaggtgaggcag-ag-gttagggtgagaaagaatggtataggaaggatttctggaaaatttcaagataaatcttaaggataagtcaaaattatacaagtaaaaaggagAATAGTGCCTGCTACATTGCAATTGTTTGGCAAACATCTGCAATGATtactaactgtctatcagtttttggctctgctt--caattctcacagtcc-aagctcactgcagttaaatcttcagtctccagcactgcacttgggaaaatgtcaaggAGTTAAATGTACATGTAATTGGAGTGCCACAAGAAGACAACTGAGAGAGAGGGGCAGAACAGCTCATGAGGGGAAAATCc-actacatacaaagaaagaatactgcagactcctcattgaaatctatgtccg----a-aaaaaatggcctggaactataaagagctgttctttaaggtacttaaaaacattttttgccaacctggaagtctttaaccagcaaaaacgtcttccaaaaacaaa--------cagccttttcagaaca----aatactgagctaattcatgtttagtacacttgc---acataagtgttaaataaaatttctttagtaaaagaattataataccagaaggaaaatttgatctgtaaaagaaaagatattaagagccccaaaaatATA i rheMac3.chr13 C 0 I 262 s macFas5.chr13 105405269 995 + 111193037 AATTGTTGAAACACTCTTTTTCATCAATCattatatattgggccaggattac--caaaaaatggaaaaagtataatttctgcttctgaggaactcacagtctagtgggagacaCCATTTATTCatccgttctttcatcaaacacccattgagaatgtaatgcaccctggacaaaggagcagtcatttgactatgacacaagataatagtcaaagtctttgccctcacggagttcacagcctagccatggagatt--aaaaataaaaagatataatagaataaagagtaatagattttaaaacact-ggaaacccagcatgtggtaaaactgaaaaagagggatacctaacctagtatgacaggtgaggcag-ag-gttagggtgagaaagaatggtataggaaggatttctggaaaatttcaagataaatcttaaggataagtcaaaattatacaagtaaaaaggagAATAGTGCCTGCTACATTGCAATTGTTTGGCAAACATCTGCAATGATTACTAACTGTCTATCAGTTTTTGGCTCTGCTT--CAATTCTCACAGTCC-AAGCTCACTGCAGTTAAATCTTCAGTCTCCAGCACTGCACTtgggaaaatgtcaaggagttaaatgtacatgtaattggagtgccacaagaagacaactgagagagaggggcagaaCAGCTCATGAGGGGAAAATCc-actacatacaaagaaagaatactgcagactcctcattgaaatctatgtccg----a-aaaaaatggcctggaactataaagagctgttctttaaggtacttaaaaacattttttgccaacctggaagtctttaaccagcaaaaacgtcttccgaaaacaaa--------cagccttttcagaaca----aatactgagctaattcatgtttagtacacttgc---acataagtgttaaataaaatttctttagtaaaagaattataataccagaaggaaaatttgatctgtaaaagaaaagatattaagagccccaaaaatata i macFas5.chr13 C 0 C 0 s papAnu2.chr13 123115272 996 - 128036923 aaTTGTTGAAACACTCTTTTTCATCAATCATTATATATTGGGCCAGGAttac--caaaaaatggaaaaagtataATTTCTACCTCTGAGGAACTCACAGTCTAGTGGGAGACACCATTTATTCATCCGTTCTTTCATCAAACACCCATTGAGAATGTAATGCACCCTGGGCAAAGGAGCAGTCATTTGACTATGACACAAGATAATAGTCAAAGTCTTTGCCCTCACGGAGTTCACAGCCTAGCCatggagatt--aaaaataaaaagatataatagAATAAAGagtaatagattttaaaacact-GGAAACCCAGCATGcggtaaaactgaaaaagagggATACCTAACCTAGTATGACAGGTGAGGCAG-AG-GTTAGGGTGAGGAAGAATGGTATAGGAAGGATTTCTGGAAATTTTCAAGATAAATCTTAAGGATAAGTCAAAATTATACAAGTAAAAAGGAGAATAGTGCCTGCTACATTGCAATTGTTTGGCAAACATCTGCAATGATTACTAACTGTCTATCAGTTTTTGGCTCTGCTT--CAATTCTCACAGTCC-AAGCTCACTGCAGTTAAATCTTCAGTCT-CAGCACTGCACTTGGGAAAATGTCAAGGAGTTAAATGTACATGTAATT-GAGTGCCA-GAGAAGACAACTGAGAGAGAGGGGCAGAACAGCTCATGAGGGGAAAATCC-ACTACATACAAAGAAAGAATACTGCAGACTCCTCATTGAAAtctatgtcag---aa-aaaaaatggccTGGAACTATAAAGAGCTGTTCTTTAAGGTACTTAAAAGCATTTTTTGCCAACCTGGAAGTCTTTAACCAGCAAAAACGTCTTCCGAAAACAAA--------CAGCCTTTTCAGAACA----AATACTGAGCTAATTCATGTTTAGTACACTTGCACTACATAAGTGTTAAAGAAAATTTCTTTAGTAAAAGAATTATAATACCAGAAGGaaaatttgatctataaaagaaaagatattaagagccccaaaaatata i papAnu2.chr13 C 0 C 0 s chlSab2.chr14 102054531 996 + 107702431 AATTGTTGAAACACTCTTTTTCATCAATCattatatattgggccaggattac--caaaaaatggaaaaagtataatttctgcctctgaggaactcacagtctagtgggagacaCCATTTATTCatccgttctttcatcaaacacccattgaaaatgtaacgcatcctgggcaaaggagcagtcatttgactatgacacaagataatagtcaaagtctttgccctcacggagttcacagcctagccatggagatt--aaaaataaaaagatataatagaataaagagtaatagatttaaaaacact-ggaaacccagcatgcggtaaaactgaaaaagagggatacctaacctagtatgacaggtgaggtag-ag-gttAGGGTGAGAAAGAATGGTATAGGAAGGATTTCTGGAAAATTTCAAGATAAATCTTAAGAATAAATCAAAATTATACAAGTAAAAAGGAGAATAGTGCCTGCTACATTGCAATTGTTTGGCAAACATCTGCAATGATTAGTAACTGTCTATCAGTTTTTGGCTCTGCTT--CAATTTTCACAGTCC-AAGCTCACTGCAGTTAAATCTTCAGTCTCCAGCACTGCACTtgggaaaatgtcaaggagttaaatgtacatgtaattggagtgccagaagaagacaactgagagagaggggcagaaCAGCTCATGAGGGGAAAATCc-actacatacaaagaaagaatactgcagactcctcattgaaatctatgtcag----a-aaaaaatggccaggaactat--agagttgttctctaaggtacttaaaaacattttttgccaacctggaagtctttaaccagcaaaaatgtcttcgggaaacaaa--------cagccttttcagaaca----aatactgagctaattcatgtttagtacacttgcactatataagtgttaaagaaaatttctttagtaaaagaattataataccagaaggaaaatttgatctacaaaagaaaagatattaagagccccaaaaatata i chlSab2.chr14 C 0 C 0 s calJac3.chr14 5663912 996 - 108792865 AGTTGCTGAAATGCTCTTTTACATCAATCATTATATATTGAACCAGGATTAC--caaaa-atgggaaaagtataatttctgcccttgaggaactcacagtctagtggaagacagcatttattcatccattctttgatcaaacacccattgagaatgtaaagtaccctgggcaaaagagcagtcgtttaactatgacacaagataaaagtcatagtctttgccctcacagagttcacagcctagccatggagatt--aaaaataaaaagataaaatataacaaagggtaatagatttatggacacc--aaaacccagtgtgcagtaaaacgaaaaaagagggtaaactaacctggtatgagaggtaagatagaag-gttAGGGTGAGAAATGATAGTATAggaaggcctcctggaaaatttcaagataaatctcaaggataagtcagaattacacagatgaagagTAGAATAGTGCCTGCTACATTGCAATTATTCTTCAAACATCTGAAATGAT-----ACTAACATCTAGTTTCAGGCACTGCTT--CAATCCTCACAGTCCTGAGCTCAGCATAGTTAAA-CTTCAGTCTCCAGCACTGCACTTGGTAAAGCCTCaaggagttaaaggtatatgcaattggagttccagaagaagagaactgagagagaggggtagagcaacttatgtggggaaaCTCCTACTAT-TGCAAACAAGgaatactgcagacaccgcaccggaatctatgaaagtaaga-aaaaaatgtccaggaactat--agaactgttctttgaagtac-taaaaatagtttttgccaacctagaagtctttaaccagcagaaatgtcttctgaaaataaaggaaaattcaagcctttcagaaca----aatattgagctaattcattattagcacacttgcactacataagtggtaaagaaaattaatttcgtgaaagaaatataatatcagaagaaacatttgatgtat-----aaaaaaaattaagggccccagaaatata i calJac3.chr14 C 0 C 0 s canFam3.chr17 60752114 952 - 64289059 AACCACTAACACcttattttatgccaatgattatatctggcaatgaagttacaacaaaaattggaggaaatacaa-ccctgcctttggag---tcacagcccagtggaaggCACCGTTCATTCACCC--------ATGGAACATTTACTGAGAATGTAACATGCTCTGGGTAAAAGGCAAGCTATTTGA----GGTA-AAAACAAAAGTCATTGTTTTTGTTCTTAATGA---CATAGC--AGCTATGGACGATAGAGAAATAAAGAGTTAGAGCTGAATAAAGAGTAATACATTTAGAGACACAGGGAAACCCTGAATGC-----AATTAAAAATGAGGGCCACCTGTCCTAGTAAGAGAAGGGAGGCAG-AGAATTATGGTAAGAAAGGAAGCTACAGGATGGCTTGCTGGGACAC------ACAAAT-TCGAGCCTAAATCAGAGTCAGGTGGATAAACAGTAGAGTAGAAGCTGCCATATTATAACTGTTCAACAAGCACCTGCAACGACGATTCACTGTCTGCTAGGATCCAATGCTGTTTGCCATTCCTCATATTCT-GAGCTGGCTGTGAATACTCCTTTGCTCCCCAGCTCTGCACTCAGGACCATGTCCAGCAGTTACA--TATGTGCAATTGGAAAACCAGGACAGGACAC---AGAGAGAGG---AAAATGTCACAAGAGGAAAAAAGCCTATTA--GAGAAGCACAgaatgccacagaattctt-tcagaacgtatggaaccaagacaaacaatggagaaaaaacaa------------tctaaagtaatgacaaaca-tattttctaacctagagtcctccgccgagcaaaa--------tgaagggaaatta-----aagccttttctggatacaggaacgtggagtaaattcttcatggatatactgggactacagaaatagtaaaggaaatcaggctagtaaaagtaaagtgataccagaaggaaactttgttctacaaaa-aaaggaaattaacagcaccggaaataca i canFam3.chr17 I 1158 C 0 e nomLeu3.chr19 76401121 491 - 81552678 I a score=472912.000000 s hg38.chr1_KI270765v1_alt 25777 263 + 185285 taaaaattatgtaaaaattttttg-----ttttttctccttaaaagataattgattatttaaagcaaaaacaat---aaagtgttataggatttgtggcacatgttaaatgtatgcatttgaagtaaaatgtatggtaacggtagtgc-aaag-acagaagagaaaaactgacttctcctgctgtacattctttatactctacatagagctgtgataagttaaagatgtgtattgtaaactctag--------------atgaaataaaaa-----------------------------tttaaaaaataaaaat s panTro4.chr1_AACZ03149435_random 131079 263 + 173505 taaaaattatgtaaaatttttttg-----ttttttctccttaaaagataattgattatttaaagcaaaaacaat---aaagtgttataggatttgtggcacatgttaaatgtatgcatttgaagtaaaatgtatgataacggtagtgc-aaag-acagaagagaaaaactgacttctcctgctgtacattctttatactctacatagagctgtgataagttaaagatgtgtattgtaaactctag--------------atgaaataaaaa-----------------------------tttaaaaaataaaaat i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chr2a 107075544 267 + 113028656 taaaaattatgtaaacatttttta-ttgtttttttctccttaaaagataatttattatttaaagcaaaaacaat---aaagtgttataggatttgtggcacatgttaaatgtatgcatttgaagtaaaatgtatgataacggtagtgc-aaag-acagaagagaaaaactgacttctcctgctgtacattctttatactctacatagagctgtgattagttaaagacatgtattgtaaactctag--------------ataaaataaaaa-----------------------------tttgaaaaataaaaat i ponAbe2.chr2a C 0 C 0 s macFas5.chr13 105406264 264 + 111193037 caaaaattatgtaaaaatttttta-ttg-ttttatctccttaaaagataattgattgtttaaagcaaaaacaat---aaaatgttataggatttgtggcacatgttaaatgtatgcatttgaagtaaaatgtatgataacagtagtgc-aaag-acagaagagaaaaactgacttctgctgctgtacattttttatactctacatagaactgtgataagttaaagacgtgtattctaaactccag--------------gtgaaataaaaa-----------------------------ttt-aaaaataaaaa- i macFas5.chr13 C 0 C 0 s papAnu2.chr13 123116268 265 - 128036923 taaaaattacgtaaaaatttttta-ttg-ttttatctccttaaaagataattgattgtttaaagcaaaaacaat---aaaatgttatagGATTTGTGGCACATGTTAAATGTATGCATTTGAAGTAAAATGTATGATAACAGTAGTgc-aaag-acagaagagaaaaactgACTTCTGCTGCTGTACATTTTTTGTACTCTACATAGaactgtgataagttaaagaCGTGTATTCTAAACTccag--------------atgaaataaaaa-----------------------------tttaaaaaataaaaa- i papAnu2.chr13 C 0 C 0 s chlSab2.chr14 102055527 265 + 107702431 taaaaattatgtaaaaatttttta-ttg-ttttatctccttaaaagataattgattgtttaaagcaaaaacaat---aaagtgttataggatttgtggcacatgttaaatgtatgcatttgaagtaaaatgtatgataacagtagtgc-aaag-acagaagagaaaaactgactgctgctgctgtacattttttatactctacatagagctgtgataagttaaagacgtgtattctaaactccag--------------atgaaataaaaa-----------------------------tttaaaaaataaaaa- i chlSab2.chr14 C 0 C 0 s calJac3.chr14 5664908 260 - 108792865 taaagaagatttaaa-ttgtttta-ttg-ttttatcttcttaaagaataattgattgtttaaagcaaaaacaat---aaagtattataggattagtggcacatgttaaatatatg-atttgaggtaaaatgtgtgataatagtagtgcaaaag-acagaagaggaaaatcaacttacactgctgtagactttttatgccttacataaagctgtgataagttaaagatgtgtattgtaaacactag--------------ataaaataaaaa-----------------------------tttaaaaaatt----- i calJac3.chr14 C 0 C 0 s canFam3.chr17 60753066 297 - 64289059 tgaaaaatataaaagacttgaaaaattg-tgtcatctctttaaaagataattg----tttaaagcaaaaccaatcacaatatactgcgggatgtgtagcacac-----ataaatgtatttgaagtaaaacttatgacaa---tagtgc-aaagaacaggaggaaaaagcgaaattctttggatgtgtgctttt--cactctacataaacctg---caagttaaaaatgtatattgtaaacactaggacaactgctaaaaatcaaacaaagaggcattgataataagcaaatagcagagatcttaagagatagaatc i canFam3.chr17 C 0 C 0 e rheMac3.chr13 133326279 262 - 137160470 I e nomLeu3.chr19 76401121 491 - 81552678 I a score=347189.000000 s hg38.chr1_KI270765v1_alt 26040 157 + 185285 ---aaaatta---------------------------------------agaagcaagatggaacaagtagaaaacaaatagaaagatggtggatttgattttag-ttttatcaataattatat-aaattcaaataatctaaacccccagaattt--ttaaaaatgggagataaaaaaacaaTAAAtattatgtattatttgt s panTro4.chr1_AACZ03149435_random 131342 157 + 173505 ---aaaatta---------------------------------------agaagtaagatggaacaagtagaaaacaaatagaaagatggtggatttgattttag-ttttatcaataattatat-aaattcaaataatctgaacccccagaattt--ttaaaaatgggagataaaaaaacaaTAAATATTATGTATTATTTGT i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chr2a 107075811 157 + 113028656 ---aaaatta---------------------------------------agaagtaagatggaataagtagaaaacaaatagagagatggtggatttgattttag-ttttatcaataattatat-aaattcaaataatctaaacccccaGAATTT--TTAAAAATGGGAGATAAAAAAACAATAAATATTATGTATTATTTGT i ponAbe2.chr2a C 0 C 0 s rheMac3.chr13 133326541 157 - 137160470 ---aaaatta---------------------------------------agaagtaagatggagcaagtagaaaacaaatagaaagatagtggatttgattttag-ttttatcaataattatac-aaatttaaataatctaaacccccaGAATTT--TTAAAAATGGGAGATTAAAAAACAATAAATATTATGTAGTCTTTGT i rheMac3.chr13 I 262 C 0 s macFas5.chr13 105406528 155 + 111193037 -----aatta---------------------------------------agaagtaagatggagcaagtagaaaacaaatagaaagatagtggatttgattttag-ttttatcaataattatac-aaatttaaataatctacaccccCAGAATTT--TTAAAAATGGGAGATTAAAAAACAATAAATATTATGTAGTCTTTGT i macFas5.chr13 C 0 C 0 s papAnu2.chr13 123116533 155 - 128036923 -----aatta---------------------------------------agaagtaagATGGAGcaagtagaaaacaaatagaaagatagtggatttgattttag-ttttatcaataattatac-aaatttaaataatctaaacccccagaattt--ttaaaaatgggagattaaaaaacaataaatattatgtAGCCTttgt i papAnu2.chr13 C 0 C 0 s chlSab2.chr14 102055792 151 + 107702431 -----aatta---------------------------------------agaAGTAAGATGGAACAAGTAGAAAACAAAT----AGACAGTGGATTTGATTTTAG-TTTTATCAATAATTATGC-AAATTTAAATAATCTAAACCCCCAGAATTT--TTAAAAATGGGAGATTAAAAAACAATAAATATTATGTAGTCTTTGT i chlSab2.chr14 C 0 C 0 s calJac3.chr14 5665168 156 - 108792865 ---aaaatta---------------------------------------agaaataagatggagcaaatagaaaacaaataGAAAGATAATGGATTTTATCTTAGtttttataaataattatat-aaagttaaataatCTAAACCCCCTGATTTT--TT--AAATGCGGGTTAAAAAGACAGTAAATCTAATGAATTCTTTAT i calJac3.chr14 C 0 C 0 s canFam3.chr17 60753363 189 - 64289059 ataaaaaatactgaatccaaagagaggcagaaaaggtggggaaaaggggggaaaaaagaggacatgagtagagaatgaatagaaagatga------------cag-tcacat-gataattacatgaaaattaaatcatctgaacctgcagattagaagtagaattggcagattggaaacaagcaaaatccatccatcggttgt i canFam3.chr17 C 0 I 385 e nomLeu3.chr19 76401121 491 - 81552678 I a score=1206961.000000 s hg38.chr1_KI270765v1_alt 26197 544 + 185285 tatcatcattattttatAAAGGGACAGGGCATAGATTTGGAcagaaatagtaagttttacaataagaaatgttaccaga-attgcata----acatttcatgacgttaga---------------------------------------------------------------------------------------agggtcaattcaacaagaagacacaacaataccaaatattgcccaacaatagagctttaaaatatacaaagaagaaatatacaacagaaaaaagaaatggatatatcccgttattgttggagattgtagattctaaccca-ttttttccagtaactaatagaatgagataagaaaccagcaaaaggatagaagaaaaacaatactctt---aatcagatttacctgattgacttttctaaaacagtccactaaacagcaatataaacgacattgttagcaactgcacatttaaaacattcactaaaattgatgataatctgggctatataaacatgtctcagtacattaaaaagaatagaaatcatacacagtatgatctctaagcacaactaaatgaaactagaaataaataatttccaaatgttctgaaat---gaaacaacac s panTro4.chr1_AACZ03149435_random 131499 544 + 173505 TATCATCATTATTTTATAAAGGGACAGGGCATAGATTTGGAcagaaatagtaagttttacaataagaaatgttaccaga-attgcata----acatttcatgatgttaga---------------------------------------------------------------------------------------agggtcaattcaacaagaagacacaacaataccaaatattgcccaacaatagagctttaaaatatacaaagaagaaatatacaacagaaaaaagaaatggatatatcccgttattgttggaaattgtagattctaaccca-tttttttcagtaactaatagaatgagataagaaaccagcaaaaggatagaagaaaaacaatactctt---aatcagatttacctgattgacttttctaaaacagtccactaaacagcaatataaaagacgttgttatcaactgcacatttaaaacattcactaaaattgacgataatctgggctatataaacatgtctcagtacattaaaaagaatagaaatcatacacagtatgatctctaagcacaactaaatgaaactagaaataaataatttccaaatgttcagaaat---gaaacaacac i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chr2a 107075968 545 + 113028656 TATCATCATTATTTTATAAAGGGACAGAGCATAGATTTGGAcagaaatagtaagttttacaataagaaatattaccaga-attgcata----acatttcatgatgttaga---------------------------------------------------------------------------------------agggtcaattcaacaagaagatacaacaatactaaatattgcctaataataaagctttaaaacatacaaagaaaaaatatacaacagaaaaaagaaatggatatatcccgttattgttggagattgtagattctaacccattttttttcggtaactaatagaatgagataagaaaccagcaaaaggatagaagaaaaacaatactctt---aatcagatttacctgattgacttttctaaaacagtccactaaacagcagtataaaagacattgttatcaactgcacatttaaaacattcactaaaattgatgataatctgggctatataaacaagtctcagtagattaaaaaggacagaaatcatacacagtatgatctctaagcacaactaaatgaaactagaaataaataatttccaaaagttctgaaat---gaaacaacac i ponAbe2.chr2a C 0 C 0 s rheMac3.chr13 133326698 542 - 137160470 TATCATCATTATTTTATAAAGGGACAGGGCATAGATTTGGAcagaaatagtaagttttacaataagaaatattaccaga-attgcata----acatttcatgatgttaaa---------------------------------------------------------------------------------------agggtcaattcaacaagaggacacaacaatactaaatattgcctaaccatagagctttaaaatatataaagaaaaaatatacaacagaaaaaagaaatgggtaaatcccgttactgttggagattgtagattctaaccca-tttttttcagtaactaatagaatgagataagaaaccagtcaaagggtagaagacaaacaatactctt---aatcagatttacctcgttgacttttctaaaacagtccaccaaacagcaatataaaagacattgttatcaactgcacatttaaaacattcactaaaactgatgataatctgggctataaaaacaagtctcaatacattgaaaaggacagaaatcatacacagtatgatctctaatttt--ttttttgaaactagaaataaattatttccaaatgttctgaaat---gaaacgacat i rheMac3.chr13 C 0 C 0 s macFas5.chr13 105406683 544 + 111193037 TATCATCATTATTTTATAAAGGGACAGGGCATAGATTTGGAcagaaatagtaagttttacaataagaaatattaccaga-attgcata----acatttcatgatgttaaa---------------------------------------------------------------------------------------agggtcaattcaacaagaggacacaacaatactaaatattgcctaaccatagagctttaaaatatataaagaaaaaatatacaacagaaaaaagaaatgggtaaatcccgttactgttggagattgtagattctaaccca-tttttttcagtaactaatagaatgagataagaaaccagtcaaagggtagaagacaaacaatactctt---aatcagatttacctcgttgacttttctaaaacagtccaccaaacagcaatataaaagacattgttatcaactgcacatttaaaacattcactaaaactgatgataatctgggctataaaaacaagtctcaatacattgaaaaggacagaaatcatacacagtatgatctctaagcacaactaaatgaaactagaaataaattatttccaaatgttctgaaat---gaaacgacat i macFas5.chr13 C 0 C 0 s papAnu2.chr13 123116688 544 - 128036923 tatcatcattattttataaagggACAGGGCATAGATTTGGACAGAAATAGTAAGTTTTACAATAAGAAATATTACCAGA-ATTGCATA----ACATTTCATGATGttaaa---------------------------------------------------------------------------------------agggtcaattcaacaagaggacaCAACAATACTAAATATTGCCTAACCAtagagctttaaaatatataaagaaaaaatatacaacagaaaaaagaaatggataaatcccgTTACTGTTGGAGATTGTAGATTCTAATCCA-tttttttCAGTAACTAATAGAATGAGATAAGAAACCAGTCAAAGGGTAGAAGACAAACAGTACTCTT---AATCAGATTTACCTCGTTGACTTTTCTAAAACAGTCCACCAAACAGCAATATAAAAGACATTGTTATCAACTGCACATTTAAAACATTCACTAAAATTGATGATAATCTGGGCTataaaaacaagtctcaatacattgAAAAGGACAGAAATCATACACAGTATGATCTCTAAGCACAActaaatgaaactagaaataaattatttccaaatgttcTGAAAT---GAAACGACAT i papAnu2.chr13 C 0 C 0 s chlSab2.chr14 102055943 544 + 107702431 TATCATCATTATTTTATAAAGGGACAGGGCATAGATTTGGAcagaaatagtaagttttacaataagaaatattaccaga-attgcata----acatttcatgatgttaga---------------------------------------------------------------------------------------aaagtcaattcaacaagaggacacaacaatactaaatattgcctaacaatagaactttaaaatatataaagaaaaaatatacaacagaaaaaagaaacggataaatcccgttattgttggagattgtaggttctaaccca-tttttttctgtaactaatagaatgagataagaaaccagccaaagggtagaagacaaacaatactctt---aattagatttacctcgttgacttttctcaaacagtccaccaaacagcaatataaaagacattgttatcaactgcacatttaaaacattcactaaaactgatgataatctgggctataaaaacaagtctcaatacattgaaaaggacagaaatcatacacagtataatctctaagcacaactaaatgaaactagaaataaattatttccaaatgttctgaaat---gaaacgacat i chlSab2.chr14 C 0 C 0 s calJac3.chr14 5665324 633 - 108792865 TATCATCATTATTTTATAAAGGGATAGGGCATAGATTTGGACAGAAATAGTAAGTTTTACAATAAGAAATATTACCAGACATTACATGAATTACACTTCACAATATCAGAGGGCTGNNNNNNNNNNGATTTGGACAGAAATAGTAGAATGACTCCaaatattaccagacattacatgaattacactcacaaaagcagagggctgattcaacaagaagacacaacaatactaaatgttgcctaacaatacagctttaaaatacataaagaaaaaatatacaactgaaagaagaaatggagaagttccattgttgttggagattatagattctagccct-ttttcttcagtatctaatagaatgagataagaaa--atgagatggttagaagacaaattatactattaacaatcatatttacctgattgacttttataaaacagttcaccaaacagaaatatacaagatattgttaaca-----acgttt--aacattcactaaaattgatgataatctgggatataaaaacaattctccatacatttaaaaggagagaaatcatacacagtatggtttctaagcacaaccaaatggaactagaaataaataatttccaaatgttctgaaatttggaaattattt i calJac3.chr14 C 0 I 501 e canFam3.chr17 60753552 385 - 64289059 I e nomLeu3.chr19 76401121 491 - 81552678 I a score=3283518.000000 s hg38.chr1_KI270765v1_alt 26741 1521 + 185285 acttctaaaaattcctgagtcaaggaggaagtcacagatgaacttagaaagtatttcaaagagaacgaagatgaaaacaaaaacagaatatatcacaatttgtaggatgcacttaaagtagccatttggggaaatgtgatagtattacatgcttatattacaatgggaaaaattctgaaaCTTGTAAATTTCAAATCATTCATGATATGTCAAGTCTTCTCAACTTGTTTTTCTTAAGGACTGTTTTGGCCTTT-----ATTGTGTAGTTTATAAGTTCCACAAAATATATTGGGAATTTATTGGAATTTTGTCAAACATATATAATTTTGTCAAACTCAAGCATAATATAAATATGTTT---GAGAATTAACATTATTATAA----AAGTGAGACATTTAGCCTATGAACGTAGTACATATCACCCCTCATTTTGATGTTATTATTGTACAaaagttttatattattgtatataaagacttcgtacactatttttaaatttattcttaaattttacacttttcatgaaatatgaagttaatcttataaattattatttttaacattattgctggtgtaaagaaatacaattcctttggacaatgaattttgtatctagtaaactcattgaatttgtttattaatt----taattcatgtacaaatttttggattttctatttaaataatcatatTGAATGAAACTACTGCATTTTAATAGTTTCTCATTATTACATTTACATATTTACTCATCTTATTCCTAAACTCAAAGATAATATAGTTCACTCTTTAGTATAAGTAC------------------------------A------TTATACATTTAGTGTAGTACAGGTACATTATGAATTGTAATGTTTACT----------------------------------------------------AAAGCTTTTCTGTAAAATCTTTCTCAGGCTAAGAACATTTTTTGTTTTTACTAGAATATAATATTAACAAAACATATTCTAGAAAAGCGTAAAATTTACCAAATATTTAGATTTTT-AATTTAAGCATCATGGAGAGAAATGACGCTCTCATGGTTAAAATGCAGAGGCTGGAAGCACAGATGTTCTTAGAGCTGCTATATTGTTTGAATCAACAGTGACGTATATAAGCAAAATTCCACAAAACCACAGATTTAACT---------------------------GCCATTATTATTCAGAAGTATCTGGTGTTACTTCTGGTGTAACAAATGGACTATTGTTAGGATAAAGAATATCCATATGAAAAAGTGCTTTACATAAAGTAGAAACTTAAATAGTAACATAATCTGGGTACAATACAACAATAATAATTAGTGCTTTGCTTTCCTGGAATACTATGTGCTAACCCTATTCTAAGGGATTTAGATAGAGatttcactgatttcaagagaaacgtttgtctacttgttcaaattttagtatctgaaactgcaatgtatcttacattagataagcataacttaatttcagcattatttaatattagtgcattaaaaagtgtatgtcattaccaatggcattttagatttagtgacatTTTGTATAATTTCATGAAACACTAGACACTATGGAATCAACTATAGTGTAAGGTC s panTro4.chr1_AACZ03149435_random 132043 1500 + 173505 acttctaaaaattcctgagtcaaggaggaagtcacagatgaacttagaaagtatttcaaagagaacgaagatgaaaacaaaaacagaatatatcacaatttgtaggatgcacttaaagtagccatttggggaaatgtgatagtattacatgcttatattacaatgggaaaaattctgaaatttgtaaatttcaaatcattcatgatatgtcaagtcttctcaacttgtttttcttaagaactgttttggccttt-----attgtgtagtttataagttccacaaaatgtattgggaatttattggaattttgtcaaacctatataattttgtcaaactcaagcataatataaatatattt---gagaattaacattattataa----aagtgagacatttagcctatgaacatagtacatatcacccctcattttgatgttattattgtacaaaagttt--tattattgtatataaagacttcgtacactatttttaaatttattcttaaattttatacttttcatgaaatatgaagttaatcttataaattattatttttaacattattgctggtgtaaagaaatacaattcctttggacaatgaattttgtatctagtaaactcattgaatttgtttattaatt----taattcatgtacaaatttttggattttctatttaaataatcatat----TGAAACTACTGCATTTTAATAGTTTCTCATTATTACATTTACATATTTACTCATCTTATTCCTAAACTCAAAGATAATATAGTTCACTCTTTAGTATAAGTAC------------------------------A------TTATACATTTAGTGTAGTACAGGTACATTATGAAGTATAATGTTTACT----------------------------------------------------AAAGCTTTTCTGTAAAATCTTTCTCAGGCTAAGAAC---TTTTTTTTTTACTAGAATATAATATTAACAAAACATATTCTAGAAAAGCGTAAAATTT------------GATTTTT-AATTTAAGCATCATGGAGAGAAATGACGCTCTCATGGTTGAAATGCAGAGGCTGGAGGCACAGATGTTCTTAGAGCTGCTATATTGTTTGAATCAACAGTGATGTACATAAGCAAAGTTCCACAAAACCACAGATTTAACT---------------------------GCCATTATTATTCAGAAGTATCTGGTGTTACTTCTGGTGTAACAAATGGACTATTGTTAGGATAAAGAATATCCATATGAAAAAGTGCTTTACATAAAGTAGAAACTTAAATAGTAACATAATCTGGGTACATTCCAATAATAATAATTAGAGCTTTGCTTTCCTGGAATACTATGTGCTAACCCTATTCTAAGGGATTTAGATATAGatttcactgatttcaagagaaacgtttgtctacttgttcaaattttagtatctgaaactgcaatgtatcttacattagataagcataacttaatttcagcattatttaatattagtgcattaaaaagtgtatgtcattaccaatggcattttagatttagtgaaatTTTGTATAATTTCATGAAACACTAGACACTATGGAATCAACTATAGTGTAAGGTC i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chr2a 107076513 1514 + 113028656 acttctaaaaattcctgagtcaaggaggaagtcacagatgaacttagaaagtatttcaaagagaacaaagatgaaaacaaaaacagaatatatcacaatttgtaggatgcacttaaagtagccatttggggaaatgtgatagtattacatgcttatattacaatgggaaaaattctgaaaTTTATAAATTTCAAATCATTCATGATATGTCAAGTCTTCTCAACTTGTTTTTCTTAAGGACTGTTTTGGCCTTT-----ATTATATAGTTTATAAGTTCCACAAAACTTATTGGGAATTTATTGGAATTTTGTCAAACCTATATAATTTTGTCAAACTGAAGCATAACATAAATATGTTT---gagaattaacattattatat----aagtgagacatttagcctatgaacatagtacatatcacccctcattttgatgttattattgtacaaaagttttatattattgtatataaagactttgtacactatttttaaatttattcttaaattttatacttttcatgaaatatgaagttaattttttaaatta------ttaacattattgctggtgtaaagaaatacaattcctttggatggtgaattttgtatctagtaaactcattgaatttgtttattaatttaagtaattcatgtacaaatttttggattttctatttaaataatcatAC----TGAAATGACTTCATTCTAATAATTTCTCATTATTACATTTACATATTTACTCATCTTATTCCTAAACTCAAAGATAATATAGTTCACTCTTTAGTATAAGTAC------------------------------A------TTATACATTTAGTGTAGTATAGGTACATTACGAAGTATAATGTTTACT----------------------------------------------------AAAGCTTTTCTGTAAAATCTTTCTCAGGCTAATAACAT-TTACTTTTTTACTAGAATATAATATTAATAAAACATATTCTAGAAAAGCGTAAAATTTACCAAATATTTAGCTTTTT-AATTTAAGCAGCATGGAGAGAAATGATGCTCTTATGGTTGAAACGCAGAGGCTGGAGGCACAGATGTTCTTAGAGCTGCTATATTGTTTGAATCAACAGTGATGTATATAAGCAAAATTCCACAAAACCACAGATTTAACT---------------------------GCCATTATTATTCAGAAGTATCTGGTGTTACTTCTGGTGTAACAAATGGACTATTGTTAGGATAAAGAATATCCATATGAAAAAGTGCTTTACATAAAGTAGAAACTTAAATAGTAACATAATCTGGGTACAATCCAGCAATAATAATTAGAGCTTTGCTTTCCTGGAATACTATGTGCTAACCCTATTCTAAGGGATTTAGATACAGATTTCACTGATTTCAAGAGAAACTTTTGTTTACTTGTTCAAATTTTAGTATCTGAAATTGCAATGTATCTCACATTAGATAAGCATAACTTAATTTCAGCATTATTTAATATTAGTGCATTAAAAAGTGTATGTCATTACCAATGGTATTTTAGATTTAGTGAAATTTTGTATAATTTCATGAAACACTAGACACTATGGAATCAACTATAGTGTAAGGTC i ponAbe2.chr2a C 0 C 0 s rheMac3.chr13 133327240 1539 - 137160470 acttctaaaaattcctgagtcaaggaggaagtcacagatgaacttagaaagtatttcaaagagaacaaagatgaaaacaaaagcagaatatatcacaatttgtaggatgcacataaagtagccatttggggaaatgtaata-------atgcttatattacaaagggaaaaTTTCTGAAATTTATATATTTCAAATCATTCATGATATGTCAAGTCTTCTCATCTTGTTTTTCTTAAGGACTGTTTTGGCCTTT-----ATTATATAGTTTATAAGTTCCACAAAATATATTGGGAATTTACTGGAATTTTGTCAAACCTGTTTAATTTTGTCAAACTCAAAGATAAtataaatatgtttgaggagaattaacattattaaaannnnnnnnnnnacatttagcctatgaacatagtacatatcacccctcattttgatgttattattgtacaaaagttttatattattgtacataaagactttgtacac--tttttaaatttattcttaaattttatacttttcgtgaaatatgaagttaattttttaaattattatttttaacattattgctggtgtaaagaaatacaattccattggacaatgaattttgtatctagt-aactcattgaatttttttattaatttaagtaattcatgtataaatttttggattttctatttaaataatcatat----TGAAACTACTGCATTTTAATAGTTTCTCATTATTATGTTTACATATTTACTCATCTTATCCCTAAACTCAAAGACAATATATTATACTCTTTAGTATAAGTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------------------------------------------------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------------------------------AAGAACATTTACTTTTTTTACTAGAATATAATATTAATAAAACATATTCCAGAAAAG-GTAAAATTTACCAAACATTTAGGTTTTT-AATTTAAGCAGCATGGAGAGAAATGACGCTCGCATGGTTGAAACACAGAGGCTGGAAGCACAGATGTTCTTAGAGCTACTATATTGTTTGAATCAACAGTGACGTATATAAGCAAAATTCCACAAAACCACAGATTTAACTGNNNNNNNNNNNNNNNNNNNNNNNNNNGCCATTATTATTCAGAAATATCTGGTGTTACTTCTTTTGTAACAAATGGACTACTGTTAGGATAAAGAATATCCATATGAAAAAGTGTTTTACATAAAGTAGAAATTTAAATAGTAACATAATCTGGGTGCAATCCAACAATAACAGTCAGAGTTTTGCTTTCCTAAAATACTATATGCTAACTCTATTCTAAGGGATTTAGATATAGCTTTCATTGTTTTCAAGAGAAACATTTGTTTACTTGTTCAAAGTTTAGTATCTGAAATGGCAATGTATCTTACATTAGATAAGCATAACTTAATTTCAACATTATTTAATATGAATGCATT-AAAAGTGTATGTCATTATCAATGGTATTTTAGATTTAGTGGAATTTTGTATAATTTCATGAAACACTAGACACTATGGAATC-ACTA------AAGGTC i rheMac3.chr13 C 0 C 0 s macFas5.chr13 105407227 1512 + 111193037 acttctaaaaattcctgagtcaaggaggaagtcacagatgaacttagaaagtatttcaaagagaacaaagatgaaaacaaaagcagaatatatcacaatttgtaggatgcacataaagtagccatttggggaaatgtaata-------atgcttatattacaaagggaaaaTTTCTGAAATTTATATATTTCAAATCATTCATGATATGTCAAGTCTTCTCATCTTGTTTTTCTTAAGGACTGTTTTGGCCTTT-----ATTATATAGTTTATAAGTTCCACAAAATATATTGGGAATTTACTGGAATTTTGTCAAACCTGTTTAATTTTGTCAAACTCAAAGATAAtataaatatgtttgaggagaattaacattattaaaa----aagcaagacatttagcctatgaacatagtacatatcacccctcattttgatgttattattgtacaaaagttttatattattgtacataaagactttgtacac--tttttaaatttattcttaaattttatacttttcgtgaaatatgaagttaattttttaaattattatttttaacattattgctggtgtaaagaaatacaattccattggacaatgaattttgtatctagt-aactcattgaatttttttattaatttaagtaattcatgtataaatttttggattttctatttaaataatcatat----TGAAACTACTGCATTTTAATAGTTTCTCATTATTATGTTTACATATTTACTCATCTTATCCCTAAACTCAAAGACAATATATTATACTCTTTAGTATAAGTAC------------------------------A------TTATATATTTAGTGTAGTACAGGTACATTATAAAGTATAATGTTTACT----------------------------------------------------AAAGCCTTTCTGTAAAATCTTTCTCAGGCTAAGAACATTTACTTTTTTTACTAGAATATAATATTAATAAAACATATTCCAGAAAAGCGTAAAATTTACCAAACATTTAGGTTTTT-AATTTAAGCAGCATGGAGAGAAATGACGCTCGCATGGTTGAAACACAGAGGCTGGAAGCACAGATGTTCTTAGAGCTACTATATTGTTTGAATCAACAGTGACGTATATAAGCAAAATTCCACAAAACCACAGATTTAACT---------------------------GCCATTATTATTCAGAAATATCTGGTGTTACTTCTGGTGTAACAAATGGACTACTGTTAGGATAAAGAATATCCATATGAAAAAGTGTTTTACATAAAGTAGAAATTTAAATAGTAACATAATCTGGGTGCAATCCAACAATAATAGTTAGAGCTTTGCTTTCCTAAAATACTATGTGCTAACTCTATTCTAAGGGATTTAGATATAGCTTTCATTGTTTTCAAGAGAAACATTTGTTTACTTGTTCAAAGTTTAGTATCTGAAATGGCAATGTATCTTACATTAGATAAGCATAACTTAATTTCAACATTATTTAATATGAATGCATT-AAAAGTGTATGTCATTATCAATGGTATTTTAGATTTAGTGGAATTTTGTATAATTTCATGAAACACTAGACACTATGGAATC-ACTATAGCGTAAGGTC i macFas5.chr13 C 0 C 0 s papAnu2.chr13 123117232 1511 - 128036923 ACTTCTAAAAATTCCTGAGTCAAGGAGGAAGTCACAGATGAACTTAGAAAGTAtttcaaagagaacaaagatgaaaacaaaagcaaaatatatcacaatttgtagGATGCACATAAAGTAGCCATTTGGGGAAATGTAATA-------ATGCTTATATTACAAAGGgaaaatttctgaaatttatatatttcaaatcatTCATGATATGTCAAGTCTTCTCATCTTGTTTTCCTTAAGGACTGTTTTGGCCTTT-----ATTATATAGTTTATAAGTTCCACAAAATATATTGGGAATTTACTGGAATTTTGTCAAAtctgtttaattttgtcaaactcaaagataatataaatatgtttgaggagaattaacattattaaaa----aaGCGAGACATTTAGCCTATGAACATAGTACATATCACCCCTcattttgatgttattattgtaCAAAAGTTTTATATTATTGTACATAAAGACTttgtacac--tttttaaatttattcttaaattttatacttttcgtgaaatatgaagttaattttttaaattattattttaaacattattgcTGGTGTAAAGAAATACAATTCCTTTGGACAATGAATTTTGTATCTAGT-AActcattgaatttttttattaatttaagtaattcatgtataaatttttggattttctatttaaataatcatat----tGAAACTACTGCATTTTAATAGTTTCTCATTATTATGTTTACATATTTACTCATCTTATCCCTAAACTCAAAGACAACATATTATACTCTTTAGTGTAAGTAC------------------------------A------TTATATATTTAGTGTAGTACAGGTACATTATAAAGTATAATGTTTACT----------------------------------------------------AAAGCCTTTCTGTAAAATCTTTCTCAGGCTAagaacatttacttttttaactagaatataatattaataaaacatattCCAGAAAAGCGTaaaatttaccaaacatttaGG-TTTT-AATTTAAGCAGCATGGAGAGAAATGACGCTCGCATGGTTGAAACACAGAGGCTGGAAGCACAGATGTTCTTAGAGCTACTATATTGTTTGAATCAACAGTGACGTATATAAGCAAAATTCCACAAAACCACAGATTTAACT---------------------------GCCATTATTATTCAGAAATATCTGGTGTTACTTCTGGTGTAACAAATGGACTACTGTTAGGATAAAGAATATCCATATGAAAAAGTGTTTTACATAAAGTAGAAATTTAAATAGTAACATAATCTGGGTGCAATCCAACAATAATAGTTAGAGCTTTGCTTTCCTAAAATACTATGTGCTAACGCTATTCTAAGGGATTTAGATATAGCTTTCATTGATTTCAAGAGAAACATTTGTTTACTTGTTCAAAGTTTAGTATCTGAAATGGCAATGTATCTTACATTAGATAAGCATAACttaatttaaacattatttaatatGAATGCATT-AAAAGTGTATGTCATTATCAATGGTATTTTAGATTTAGTGgaattttgtataatttcatgAAACACTAGACACTATGGAATC-ACTATAGCGTAAGGTC i papAnu2.chr13 C 0 C 0 s chlSab2.chr14 102056487 1511 + 107702431 acttctaaaaattcctgagtcaaggaggaagtcacagatgaacttagaaagtatttcaaagagaacaaagatgaaaacaaaagcagaatatatcacaatttgtaggatgcacataaagtagacatttggggaaa-atgatagcattacatgcttatattacaaagggaaaaTTTCTGAAATTTATATATTTCAAATCATTCATGATATGTCAAGTCTTCTCATCTTGTTTTTCTTAAGGACTGTTTTGGCCTTT-----ATTATATAGTTTATAAGTTCCACAAAATGTATTGGGAATTTACTGGAATTTTGTTAAACGTGTATAATTTTGTCAAACTCAAAGATAAtataaatatgtttgaggagaattaacattattaaaa----aagtgagacatttagcctatgaacatagtacatatcatccctcattttgatattattactgtacaaaagttttttattattgtacat----actttgtacac--tttttaagtttattcttaaattttatacttttcatgaaatatgaagttatttttaaaaattattatttttaacattattgctggtggaaagaaatacaattcctttggacaatgaattttgtatctagtaaactcattgaatttttttattaatttaagtaattcatgtacaaatttttggattttctatt----taatcatgt----TGAAACTATTGCATTTTAATAGCTTCTCATTATTATGTTTACATATTTACTCGTCTTATCCCTAAACTCAAAGACAATATAGTTTACTCTTTAGTATAAGtac------------------------------a------ttatacatttagtgtaatacaggtacattataaagtataATGTTTACT----------------------------------------------------AAAGCCTTTCTGTAAAATCTTTCTCAGGCTAAGAAGATTTACTTTTTTTACTAGAATATAATATTAATAAAACATATTCCAGAAAAGCATAAAATTTACCAAATATTTAGATTTTT-AATTTAAGCAGCATGGAGAGAAATGATACTCTCATGGTTGAAACACAGAGGCTGGAAGCACAGATGTTCTTAGAGCTACTACATTGTTTGAATCAACAGTGACGTATATAAGCAAAATTCCACAAAACCACAGATTTAACT---------------------------GCCATTATTATTCAGAAATATCTGGTGTTACTTCTGGTGTAACAAATGGACTACTGTTAGGATAAAGAATATCCATATGAAAAAGTGTTTTACATAAAGTAGAAATTTAAATAGTCACATAATCTGGGTGCAATCCAACAATAATAGTTAGAGCTTTGCTTTCCTAAAATACTATGTGCTAACGCTATTCTAAGGGATTTAGATATAGCTTTCATTGATTTCAAGAGAAACATTTGTTTACTTGTTCAAATTTTAGTATCTGAAATGGCAATGTATCTTACATTAGATAAGCATAACTTAATTTCAACATTATTTAATATTAATGCATT-AAAAGTGTATGTCATTATCAATGGTATTTTAGATTTAGTGGAATTTTGTATAATTTCATGAAACACTAGACAGTATGGAATC-ACTATAGCGTAAGGTC i chlSab2.chr14 C 0 C 0 s calJac3.chr14 5666458 1493 - 108792865 acttctaaaaattcctgagtcaaggaggaagtcacagataaacttagaaaatgtttcaaagagagcaaagatgaaaacaaaaacagaatatatcacaatttgtaggctgcacatgaagtaggcattaggggaaatgtgatagta-tacatgattatagtacaaagggagaaattctgaaatTTGTAAATTTGGAATCATTCATGATATGTGAAGTCTTCTCATCTTGTTTTCCTTGAGGATTGTTTTAGTCTTTAATTGATTATATACTTTATaagttccacaaaatgtactgggcatttattggaattttgtcaaacct----------------------------ataaatatgtttgaggagaattagcattattgtaa----aggggagacatttagcctgtgaacacggtacatatcatccctcattttgatattattattgtacaaaagttttatattattgtatataaagaccttgtacac--tcttt----------ttaaattttatactcttcttgaaatattaagttaattttttaaattattatttctaacattattgctcgtgtaaagaaatacaatttctttggacgatgagttttgtacctagtaaactcattaaatttgttttttaatttaaataattcatgtacaaatttttggattttctatttaactaatcatat----TCAAACTACTGCATTTTAATAGTTTCTCATTGTTACATTTACATATTTACTCATTTTATTCCTAAACTCAAAGATAATATGGTTTACTGTTTAGCACAAGTAT------------------------------GCTATACTTATGCATTTAGTGCAGTACAGGAACATTCTGAAGTATAATGTTTGCT----------------------------------------------------AAAGCTTTTTAACAAAATCTTCCTCAGGCTATGAACATTTACTTTTTTTACTCGAATATGATATTGATAAAACATATTCTAGAAGAGCataaaatttatcaaatatttagatttttaaatttaaGCAGCATGGAGAGAAATGATTTTCTTATGGTTCAGACGCAGAGACTGCAAGCACAGATGTTCTTAGAACTACTATATTGTTTGAATCAACAGTGACGTATATAAGCAAAATTCCACAAAACCACAGCCTTGACT---------------------------GTCATTATTATTCAGAAGTATCTGGTGTTACTTGTGGTGTAACAAATGGACTATTGTTAGGACAGAGAATATCCATATGAAAAAGTGCTTTACATAAAGTAGAAACTTAAATAGTATCTTAATCTGGGTACAATCCAACAATAGTAATTGGAGCTTTGCTTTCATAGAACACTGTGTGCTAAGGCTATTCTAAGGGATTTAGATACAGAGTTCATTGATTCCAAGAGAAATGTTTGTTTACTTGTTCAAA-TTTGGTATCTGAAATTGCAATGTATCTTACATTAGATAATCATAACTTAATTTCTGCATTAGTTAATATTAGCGCATTAAAGAGTGTATGTCAGCAGAAATGATATTGTAGATTTAGTGAAATTTTCTATGATTTCATGAAACACTTGACACTATGGAAAT-ACCATAATGTAAAGTC i calJac3.chr14 I 501 C 0 e canFam3.chr17 60753552 385 - 64289059 I e nomLeu3.chr19 76401121 491 - 81552678 I a score=1314558.000000 s hg38.chr1_KI270765v1_alt 28262 525 + 185285 TAC-AAAAGCAGGAAATTCTATTTTAGTTACTC-----TTATAGGAGTCACTTGATAAATATATGT------------TGAATGAGTTGTCCAATGAAATAAATAAAGGCATAGCATTCTAGCATCATTCG-GGGGGCAGTAGTTCATCCTGT-GGCCTCATAACACTTGAGCAATGATGTGGTCATCACTTGGAAA--TGCTCAATTTAATCAGGTATGTTCATAATGAGGGCTTCTCATTTTTCTGTGAAAATACGAAaa-tatactgtctttagggaggaagcaaacaatgtaataaaatataga--------------aaaatagttaagtatgattcatatt-aaaagccctggaatttataaaaataagctttatttgtta-gggaaaa-aatt---------------------------------------------------acattgtgtaacactctattcccca-tgattcctag---taaataagACAATAAACCCTTTAAGA-AGAACTTTGTCAG--------------AAACAAAGGATCACTATTTCCCGAAGAGCTGCAAAATACCGTAGGCCAGAATTAATACAGGTGATAACTGAGGTCATAAAAGCCATTTAGA s panTro4.chr1_AACZ03149435_random 133543 526 + 173505 TAC-AAAAGCAGGAAATTCTATTTTAGTTACTC-----TTATAGGAGTCACTTGATAAATATATGT------------TGAATGAGTTGTCCAATGAAATAAATAAAGGCACAGCATTCTAGCATCATTCG-GGGGGCAGTAGTTCATCCTGT-GGCCTCATAACACTTGAGCAATGATGTGGACATCACTTGGAAA--TGCTCAATTTAATCAGGTatgttcataatgagggcttctcatttttctgtgaaaatactaaaa-tatactgtctttagggaggaagcaaacaatgtaataaaatataga--------------aaaatagttaagcatgattcaaattaaaaagccctggaatttataaaaataagctttatttgtta-gggaaaa-aatt---------------------------------------------------acattgtgtaacactctattcccca-tgattcctag---taaataagACAATAAACCCTTTAAGA-AGAACTTTGTCAG--------------AAACAAAGGATCACTATTTCCCGAAGAGCTGCAAAATACCATAGGCCAGAATTAATACAGGTGATAACTGAGGTCATAAAAGCCATTTAGA i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chr2a 107078027 525 + 113028656 TAC-AAAAGCAGGAAATTCTATTTTAGTTATTC-----TTATAGGAGTCACTTGATAAGTATACGT------------TGAATGAGTTGTCTAATGAAATAAATAAAGGCACAGCATTCTACCGTGATTCA-GGGGACACTAGTTCATCCTCT-GGCCTCATAACACTTGAGCAATGATGTGGACATCACTTGGAAA--CGCTCAGTTTAATCAGGTATGTTCATAAAGAGGGCTTCTCATTTTTCTGTGAAAATACTAAaa-tatactgtctttagggaggaagcaaacaatgtaataaaatataga--------------aaaatagttaagcatgattcaaatt-aaaagccctggaatttataaagataagctttatttgtta-gggaaaa-aatt---------------------------------------------------acattgtgtaacactctattcccca-tgattcctag---taaataagACAATAAACCCTTTAAGA-AGAACTTTGTCAG--------------AAACAAAGGATCACTATTTCCCGAAGAGCTGCAAAATACCATAGGCCAGCATTAATACAGGTGATAACTGAGGTCATAAAAGCCATTTAGA i ponAbe2.chr2a C 0 C 0 s rheMac3.chr13 133328779 587 - 137160470 TAC-AAAAGCAGGAAATTTTATTTTAGTCACTC-----TTATAGGAGTCACTTGATAAATATTTGTTGAATAA--AAATGAATGAGTTGTCCAATGAAATAAATAAAGGCACAGCATTCTAGCCTCATTCA-GGGGGCAGTAGTTCATCCTCT-GGCCTCATATCACTTGAGCAATGATGTGGACATCACTTGGAAA--TGCTCAACTTAATCAGGTATGTTCATAATGAGGGCTTCTCATTTTTCTGTGAAAATACTACAA-TATACTGTATTTAGGGAGGAATCAAACAATGTAACAAAATATAGA--------------AAAATAGTTAAGCATGATTCAAATT-AAAAGCCCTGGAATTTATAAAAATAAGCTTTATTTATTC-GGGAAAA-AATTACATTGTGCAACTCTCTATTCCAATAAGCTTTATTTATTCGGGAAAAAATAACATTGTGCAACTCTCTATTCCCCGGTGATTCCTAG---TAAATAAGACAATAAACCCTTTAAGA-TGAACTTTGTCAG--------------AAGCAAAGGATCACTATTTCCCGAAGAGCTGCAAAATACCATAGGCCAGCAATAATACAGGTGATAACTGAGGTCATAAAAGCCATTTAGA i rheMac3.chr13 C 0 C 0 s macFas5.chr13 105408739 536 + 111193037 TAC-AAAAGCAGGAAATTCTATTTTAGTCACTC-----TTATAGGAGTCACTTGATAAATATTTGTTGAATAA--AAATGAATGAGTTGTCCAATGAAATAAATAAAGGCACAGCATTCTAGCCTCATTCA-GGGGGCAGTAGTTCATCCTCT-GGCCTCATATCACTTGAGCAATGATGTGGACATCACTTGGAAA--TGCTCAACTTAATCAGGTATGTTCATAATGAGGGCTTCTCATTTTTCTGTGAAAATACTAcaa-tatactgtctttagggaggaatcaaacaatgtaacaaaatataga--------------aaaatagttaagcatgattcaaatt-aaaagccctggaatttataaaaataagctttatttattc-gggaaaa-aatt---------------------------------------------------acattgtgcaactctctattccccggtgattcctag---taaataagACAATAAACCCTTTAAGA-TGAACTTTGTCAG--------------AAGCAAAGGATCACTATTTCCCGAAGAGCTGCAAAATACCATAGGCCAGCAATAATACAGGTGATAACTGAGGTCATAAAAGCCATTTAGA i macFas5.chr13 C 0 C 0 s papAnu2.chr13 123118743 536 - 128036923 TAC-AAAAGCAGGAAATTCTATTTTAGTCACTC-----TTATAGGAgtcacttgataaatatttgttgaataa--aaatgaatgagttgtccaatgaaataaataaaggcaCAGCATTCTAGCCTCATTCA-GGGGGCAGTAGTTCATCCTCT-GGCCTCATGTCACTTGAGCAATGATGTGGACATCACTTGGAAA--TGCTCAACTTAATCAGGTATGTTCATAATGAAGGCTTCTCATTTTTCTGTGAAAATACTACAA-TATACTGTCTTTAGGGAGGAATCAAACAATgtaacaaaatataga--------------aaaatagttAAGCATGATTCAAATT-AAAAGCCCtggaatttataaaaataagctttatttaTTA-GGGAAAA-AATT---------------------------------------------------ACACTGTGCAACTCTCTATTCCCCGGTGATTCCTAG---TAAATAAGACAATAAACCCTTTAAGA-TGAACTTTGTCAG--------------AAGCAAAGGATCACTATTTCCCGAAGAGCTGCAAAATACCATAGGCCAGCAATAATACAGGTGATCACTGAGGTCATAAAAGCCATTTAGA i papAnu2.chr13 C 0 C 0 s chlSab2.chr14 102057998 531 + 107702431 TAC-AAAAGCAGGAAATTCTATTTTAGTCACTC-----TTATAGGAGTCACTTGATAAATATTTGTTGAATAA--AAATGAATGAGTTGTCCAATGAAATAAATAAAGGCACAGCATTCTAGCCTCATTCA-GGGGGCAGTAGTTCATCCTCT-GGCCTCATATCACTTGAGCAATGATGTGGACATCACTTGGAAA--TGCTCAACTTAATCGGGTATGCTCATAATGAGGGCTTCTCATTTTTCTGTGAAAATACTAAAA-TATACTGTCTTTAGGGAGGAATCAAACAATGTAATAAAATATAGA--------------AAAATAGTTAAGCATGATTCAAATT-AAATGCCCTGGAATTTATAAAAATAAGCTTTATTTATTA-GGGAAAA-AATT---------------------------------------------------ACATTGTGCAACACTCTATTCCCCAGTGATTCCTAG---TAAATAAGACAATAAACCCTTTAAGA-TGAACTTTGTCAG-------------------AAGGATCACTATTTCCCGAAGAGCTGCAAAATACCATAGGCCAGCAATAATACAGGTGATAACTGAGGTCATAAAAGCCATTTAGA i chlSab2.chr14 C 0 C 0 s calJac3.chr14 5667951 540 - 108792865 TACAAAAAGCAGGAAATTCTGTTTTAGTCCCTC-----TTATAGGAGTCACTTGATAAATAACTGTTGAATAACTAAATGAATACGTTGTCCAATGAGCTAAGTAAACGCAGAGCGTACTAGCACCATTCA-GGTGGTAGCACTTCATCCTCT-GGCCTCATCTCACTTCAGCAATCAGGGAGACGTCACTTGGAAA--TGCTCAATTTAATCACGTATGTTCATAATGAGGGCTTCTCATTGTTCTGTGAAAATACTAAAA-TATACTGTTTTGGGGGAGGAAGCAAACAATTTAATAAAAAAGAGA--------------AATATAGTTAAGCAATATTCAAATT-CAAAGTCCTGGAAATTATAAGAATAAGCTTCATTTATTA-GGAAAAATAATT---------------------------------------------------AAGTTGTGTAACGTTCTATTCCCCAATTATTCCTAG---TCAGAAAGACAATAAACCCTTTAAGA-TGAACTTTGTCAG--------------AAACAAAGGATCACTATTTCCCAAAGAGCTGCGGAATACCATAGGCCAGCAATAACACAGGTGATAACGGAGGGCATAAAAGGCATTGAGA i calJac3.chr14 C 0 C 0 s canFam3.chr17 60753937 540 - 64289059 tac-aagagcagggtatttcgtttcttttgttcactgGTAATAGAAATAAC-----AAACATTGGTTCAATGACTAAATAAATGAGGTCATCAATGAACGAAATAAATGCAGAGCATTCTGGAATCATTCATAATGGTAGTGAGTAATCATCTAGGCCT-----CACTTG--------TAGAGACAACACTGTAAAAATTACTCCATTTAATGACATATATCCATAATGAG---------------------AAGACCACAATTATGCTATATTTAGAAAAGAAGCAAACCATGTAATACCACATAGaaaacaaaacaaaacaaaacaCATAGGCATGATTGATACT---AAGTTCTGGAATTTATAGAGATAAGCTTCATTTATTAGGGGAAAA-AATC---------------------------------------------------ATACTGGATAGCACTTTATTCCCCAAAGAGTCTTAGTAATAAATAAGATGCTAAACTTTTTAAAAGTGAACCCTGTTGaaacaaaacaaaacaaaacaaGGGATCATTATTTTTAGGAGAATTGCAAAATAAAATAGGCCAGCAGCAACACGGCTAGTAATTGAGGTCATAAAAGCAATGGAGA i canFam3.chr17 I 385 I 562 e nomLeu3.chr19 76401121 491 - 81552678 I a score=194991.000000 s hg38.chr1_KI270765v1_alt 28787 89 + 185285 CAAGTTGAGTTGACAATGATCTAAGAAGGGCCAGGCCACTCTCCTGTGCCCCCTCCCTAAGCAGCTGCGCATTGCTTTGCTTTGACAAC s panTro4.chr1_AACZ03149435_random 134069 89 + 173505 CAAGTTGAGTTGACAATGATCTAAGAAGGGCCAGGCCACTCTCCTGTGCCCCCTCCCTAAGCAGCTGCCCATTGCTTTGCTTTGACAAC i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chr2a 107078552 89 + 113028656 CAAGTCGAGTTGAAAATGATCTAAGAAGGGCCAGGCCACTCTCCTGTGCCCCTTCCCTAAGCAGCTGCGCATTGCTTTGCTTTGACAAC i ponAbe2.chr2a C 0 C 0 s rheMac3.chr13 133329366 89 - 137160470 CAAGTTGAGTTGACAATGATCTAAGAAGGGCCAGGCCACTCTCCTGTGCCCCCTCCCCAAACTGCTGCCAATTGCTTTGCTTTGACTAC i rheMac3.chr13 C 0 C 0 s macFas5.chr13 105409275 89 + 111193037 CAAGTTGAGTTGACAATGATCTAAGAAGGGCCAGGCCACTCTCCTGTGCCCCCTCCCCAAACTGCTGCCAATTGCTTTGCTTTGACTAC i macFas5.chr13 C 0 C 0 s papAnu2.chr13 123119279 89 - 128036923 CAAGTTGAGCTGACAATGATCTAAGAAGGGCCAGGCCACTCTCCTGTGCCCCCTCCCCAAACAGCTGCCAATCGCTTTGCTTTGACTAC i papAnu2.chr13 C 0 C 0 s chlSab2.chr14 102058529 89 + 107702431 CAAGTTGAGTTGACAAGGATCTAAGAAGGGCCGGACCACTCTCCTGTGCCCCCTCCCCAAGCATCTGCCAATCACTTTGCTTTGACTAC i chlSab2.chr14 C 0 C 0 s calJac3.chr14 5668491 87 - 108792865 CAAGTTGTGTTGACAATGATCTAGGAAGGGCCAGGCCACTCTCCTGCACCCCTTCCC-GGGCAGCT-CCCATCCCTTTGCTTTGACTCC i calJac3.chr14 C 0 C 0 e canFam3.chr17 60754477 562 - 64289059 I e nomLeu3.chr19 76401121 491 - 81552678 I a score=645795.000000 s hg38.chr1_KI270765v1_alt 28876 268 + 185285 CTCCTTCCCATGCAC--CCCAtcc--cacacccacagccctgcttggaactctcctaagttccagactcacgtactcagctgcctcctagagccctctacctggagacgtcc-agaacactttgagttcagtac---gctcacaagtgaagtcataaAGAGCCAAGAGTGCAGGATTGGGGTCAGGCAGCC-CCACTTCTTAGTTATGCGTAGACTTCTTAGTTTACTTGACCCTCTTCATTTTCAGATTTCATTTCTGTAAAATAGCAATGGGCTT s panTro4.chr1_AACZ03149435_random 134158 268 + 173505 CTCCTTCCCATGCAC--CCCATCC--CACACCCACAGCCCTGCTTGGAActctcctaagttccagactcacgtactcagctgcctcctagagccctctacctggagacgtcc-agaacactctgagttcagtat---gctcacaagtgaagtcataaAGAGCCAAGAGTGCAGGATTGGGGTCAGGCAGCC-CCACTTCTTAGTTATGCGTAGACTTCTTAGTTTACTTGACCCTCTTCATTTTCAGATTTCATTTCTGTAAAATAGCAATGGGCTT i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chr2a 107078641 267 + 113028656 CTCCTT-CCATGCAC--CCCGtcc--cacacccacagccctgcttggaactctcctaagttccagactcaggtactcagctgcctcctagagccctctacctgcagatgtcc-agaacgctttgagttcagtat---gcttacaagtgaagtcgtaaAgagccaagagtgcaggattggggtcaggcagcc-ccacttcttagttatgtgtagacttcttagtttacttgaccgtcttcattttcagatttcatttctataaaatagcaatgggctt i ponAbe2.chr2a C 0 C 0 s rheMac3.chr13 133329455 264 - 137160470 CTCCTTCCCATGCA---CCCATCC--CGTACCCACAGCCCTGCTTGGAACTCTCCTAAGTTCCAGACTCAGGTACTCATCTGCATCCTAGTGCCCTCTACCTGGAGACGTCC----ATACTTTTAGTTCAGTGT---GCTCACAAGTGAAGTCATAAAgagccaagagtgcaggattagggtcaggcagcc-ccacttcttagttatgtttagatttcttagttcacttgaccctctacgttttcagatttcatttctataaaataacaatgggctt i rheMac3.chr13 C 0 C 0 s macFas5.chr13 105409364 264 + 111193037 CTCCTTCCCATGCA---CCCATCC--CGTACCCACAGCCCTGCTTGGAACTCTCCTAAGTTCCAGACTCAGGTACTCATCTGCATCCTAGTGCCCTCTACCTGGAGACGTCC----ATACTTTTAGTTCAGTGT---GCTCACAAGTGAAGTCATAAAGAGCCAAGAGTGCAGGATTAGGGTCAGGCAGCC-CCACTTCTTAGTTATGTTTAGATTTCTTAGTTCACTTGACCCTCTACGTTTTCAGATTTCATTTCTATAAAATAACAATGGGCTT i macFas5.chr13 C 0 C 0 s papAnu2.chr13 123119368 267 - 128036923 CTCCTTCCCATGCA---CCCATCC--CGTACCCACAGCCCTGCTTAGAACTCTCCTAAGTTCCAGACTCAGGTACTCATCTGCACCCTAGTGCCCTCTACCTGGAGACGTCC----ATACTTTTAGTTCAGTGTAGCGCTCACAAGTGAAGTCATAAAGAGCCAAGAGTGCAGGATTAGGGTCAGGCAGCC-CCACTTCTTAGTTATGTTTAGATTTCTTAGTTCACTTGACCCTCTACGTTTTCAgatttcatttctataaaatagCAATGGGCTT i papAnu2.chr13 C 0 C 0 s chlSab2.chr14 102058618 264 + 107702431 CTCCTTCCCATGCA---CCCATCC--CATACCCACAGCACTGCTTGGAACTCTCCTAAGTTCCAGACTCAGGTACTCATCTGCATCCTAGTGCCCTCTACCTGGAGACATCC----ATACTTTTAGTTCAGTAT---GCTCACAAGTGAAGTCATAAAGAGCCAAGAGTGCAGGATTAGGGTCAGGCAGCC-CCACTTCTTAGTTATGTTTAGACTTCTTAGTTCACTTGACCCTCTACGTTTTCAGATTTCATTTCTATAAAATAGCAATGGGCTT i chlSab2.chr14 C 0 C 0 s calJac3.chr14 5668578 267 - 108792865 CTCCTTCCCATACAC--CCCAtcc--cacacccacagctctgcttggaactctcctcagttccagactcaggtactcagctgcctcctaa-gccctctacctggaGATGCCC-AGAACGCTTTGAGTTCAGAAT---GCTGACGAGTGAAGTCACAAAgagccaagagtgcaggactggggtcaggcagcc-ctgttccttagctatgtgaggacttcttagtttacctgacactcttcattttcagatttcatttctataaaatagcaatgggctt i calJac3.chr14 C 0 C 0 s canFam3.chr17 60755039 263 - 64289059 CTCCCACCCATCCCTAACCCAGCCGTCACAACCAAATCTCTGCCTGGAACCCT-CTCGCTTCCA--------CACTCATCTAGCTCCCAGGTCCCCCGACC--GGGATGTCTCATGGCCCTTTGAATCTCACCG---GCTTACCACGGATGTGACAGTCACCTGGGCGGGGAGCCTTCAGGACAGCCGGCCTccacctcttagttgtgtggacacctcttcagttcctcgacccttctgattctcagctcctgcttctgtaaaatggTAACAGGCCT i canFam3.chr17 I 562 I 55 e nomLeu3.chr19 76401121 491 - 81552678 I a score=184863.000000 s hg38.chr1_KI270765v1_alt 29144 85 + 185285 TGTAGAATTGCTTTTAGAGTATTGTAAGATAACTTAGGTAATACCTCTAACAAAGAGTCAAACAGATATTGGACATATAACCAAT s panTro4.chr1_AACZ03149435_random 134426 85 + 173505 TGTAGAATTGCTTTTAGAGTATTGTAAGGTAACTTAGGTAATACCTCTAACAAAGAGTCAAACAGATATTGGACATATAACCAAT i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chr2a 107078908 85 + 113028656 tgtagaattgctattagagtattgtaaaataacgtaggtaatacctctaacaaagagtcaaacacatattggacatataacgaat i ponAbe2.chr2a C 0 C 0 s rheMac3.chr13 133329719 85 - 137160470 catagaattgcttttagagtattataaaataacgtaggtaatacctctaacaaatattcaaacacatattgaacatataaccaat i rheMac3.chr13 C 0 C 0 s macFas5.chr13 105409628 85 + 111193037 CATAGAATTGCTTTTAGAGTATTATAAAATAACGTAGGTAATACCTCTAACAAATATTCAAACACATATTGAACATATAACCAAT i macFas5.chr13 C 0 C 0 s papAnu2.chr13 123119635 85 - 128036923 CATAGAATTGCTTTTAGAGTATTATAAAATAACGTAGGTAATACCTCTAACAAATATTCAAACACATATAGAACATATAACCAAT i papAnu2.chr13 C 0 C 0 s chlSab2.chr14 102058882 85 + 107702431 CATAGAATTGCTTTTAGAGTATTATAAAATAACGTAGGTAATACCTCTAACAAATATTCAAACGCATATTGAACATATAACCAAA i chlSab2.chr14 C 0 C 0 s calJac3.chr14 5668845 85 - 108792865 cgtagaattgcttgtagaatattatgaaatgacataggtaatacctctcacaaagagtcaaacacatagtggacatacaaccaat i calJac3.chr14 C 0 C 0 e canFam3.chr17 60755302 55 - 64289059 I e nomLeu3.chr19 76401121 491 - 81552678 I a score=3472559.000000 s hg38.chr1_KI270765v1_alt 29229 1442 + 185285 GTCTGGTACCGGCTTTCCCCTCCTTTCACAAGCTTAATGGCAATGCAGTTAAGT-CAAGGAC----CTGGATCAGAATTACGGCATGAGGAAC---ACACTCCATGTTTGTGCACAACCATTCCTGGATGACTTTTCAAG-GGTCTTCTCT--TTTCTTCCACCTGA-------CAACAAGTTCTCCAACTTCCCTACTTGGAAGTGGCTGCCTGCCATGAGATAATCCCCTTTCTAATTTGTCCTCCCATGAACAATGCACCCAAGGAGT------CCTTCCTCTTACTCCATGTC-TCCTTGAGCCTGCAGAATGGAGCTCAAG---TTTGTTA-GAGCAGCCACGGTTCCCGCACCACCTCCCCTTCTGCCTTGCGGGCTGCCAAGCCT--GCGTCCACC-GTGCGcgtgaactccagcatcaggaagtttcatgcgtgtgccccgtgctcctatctgggctcacgtgaacgtgctcttctctctttctgaaatgcccctttcctttgagcgattgtggaaatcctcctcatcttttacaactagtctcagatgcgccctccttcccgaagcctcctccgaATGGCCTGTCTACACATGGCCCAAACTTGGTTTCAGATCATTAAAATAGAAGG-ACAAAAATGAATGGTGTGCAGGGAACACACAGACAGCCTGTGGCATGGTTGGAAGCCGTGGTCTGATCTATGGCGAGCCCTGAGACCACGACTGTTCTTTGATTTTTGCTGCAGCCCTGAGAACCCTGTGGATCTGCTCAGGCATCTTGCTGCTCTTGCGATCGAGCCCTTTGTTTCTCTGCCTATCTTGTTTCCTGCTTTTCACTTTCTTGTTCTCACCTGGCTGATTTGTAAATA-ATA-AAGTAACCGAAGTTAGACAATTCCAGCTACTTAAGATAACTGTGTTTCCAGGGAATCTGT---TTCATGTGTAGAGAGGAAAAAATAAGTAGTCACAATCCTGGATTTTCTATGTGAATCAGTTTGCTTAGAGAGCAGCAGCTGTTAAAATATACA--TGATATTTGAGTTCAAACGGGAGCA-GAAAGTATACTTAGTGTGGGCCAAAGAAAGGCATTTCAACGACAGGGCTCTTTCATCTGGAGTGGC-GTGCCTAATTCTGATTTAGAGA---AAAGCAGGTCTGATATTGTGCAGTGGAAAAGGAGTCCTGGGGCTGGGCATCAGAAAATCAGCTTTCAGAC----ACTTCCTCCAGGTTGTAGCTGAGAAACTTGAGGCTCTTTAGTGAGATG-AAAAAATAGTAGGCGTCTCATCCAGCACAGAACCATATTGTCACAGTGTACACACAGATGGCTGAAGGCAGAAAACACCACACCAGTTCAGTTCCCCCCAGTGAAACCTATCTTGCCTTGGTGGAAAGAAGTCACCAAATCTGA--AGGTTTATCATGAACAGGCAAAAGAGTTTCACTTGTTTTCATGAC----TCAAAACATTTGGCTTAAACTGCA s panTro4.chr1_AACZ03149435_random 134511 1444 + 173505 GTCTGGTACCGGCTTTCCCCTCCTTTCACAAGCTTAATGGCAATGCAATTAAGT-CAAGGAC----CTGGATCAGAATTACGGCATGAGGAAC---ACACTGCATGTTTGTGTACACCCATTCCTGGATGACTTTTCAAG-GGTCTTCTCT--TTTCTTCCACCTGA-------CAACAAGTTCTCCAACTTCCCTACTTGGAAGTGGCTGCCTGCCATGAGATAATCCCCTTTCTAATTTGTCCTCCCATGAACAATGCACCCAAGGAGT------CCTTCCTCTTACTCCATCTC-TCCTTGAGCCTGCAGAATGGAGCTCAAG---TTTCCTA-GAGCAGCCACTGTTCCTGCACCACCTCCCCTTCTGCCTTGCGGGCTGCCAAGCCT--GCGTCCACC-GTGCGCATGAACTCCAGCATCAGCAAGTTTCATGCGTGTGCCCCGTgctcctatctgggctcacgtgaacgtgctcttctctctttctgaaatgcccctttcctttgagcgattgtggaaatcctcctcatcttttacaactagtctcagatgcaccctccttcccgaagcctcctccgaATGGCCTGTCTACACATGGCCCAAAGTTGGTTTCAGATCATTAAAATAGAAGGAAAAAAAATGAATGGTGTGCAGGGAACACACAGACAGCCTGTGGCATGGTTGGAAGCT-TGGTCTGATCTATGGCGAGTCCTGAGACCACGACTGTTCTTTGATTTTTGCTGCAGCCCTGAGAACCCTGTGGGTCTGCTCAGGCATCTTGCTGCTCTTCCGATCAAGCCTTTTGTTTCTCTGCCTATCTTGTTTCCTGCTTTTCACTTTCTTGTTCTCACCTGGCTGATTTGTAAATA-ATA-AAATAACCGAAGTTAGACAATTCCAGCTACTTAAGCTAACTGTGTTTCCAGGGAATCTGT---TTCATGTGTAGAGAGGAAAAAATAAGTAGTCAGAATCCTGGATTTTCTATGTGAATCAGTTTGCTTAGAGAGCAGCAGCTGTTAAAATATAAATGTGATATTTGAGTTCAAACGGGAGCA-GAAATTATACTTAGTGTGGGCCAAAGAAAGGCATTTCAACGACAGGGCTCTTTCATCTGGAGTGGC-GTGCCTAATTCTGATTTAGAGA---AAAGCAGGTCTGATATTGTGCGGTGGAAAAGGAGGCCTGGGGCTGGGCATCAGAAAATCAGCTTTCAGAC----ACTTCCTCCAGGTTGTAGCTGAGAAACTTGAGGCTCTTTAGTGAAATG-AAAAAATAGTAGGCGTCTCATCCAGCACAGAACCATATTGTCAGAGTGTACACACAGATGGCTGAAGGCAGAAAACACCACACCAGTTCAGTTCCCCCCAGTGAAACCTATCTTGCCTTGGTGGAAAGAAGTCACCAAATCTGA--AGGTTTATCATGAACAGGCAAAAGAGTTTCACTTGTTTTCATGAT----TCAAAACATTTGGCTTAAACTGCA i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chr2a 107078993 1440 + 113028656 gtctggtACCGGCTTTCCCCTCCTTTCACAAGCTTAATGGCAATGCAGTTAAGT-CAAGGAC----CTGGATCAGAATTACGGCATGAGGGAC---ACACTCCATGTGTGTGCACACCCGTTCCTGGATGGCTTTTCAAG-GGTCTTCTCT--TTTCTGCCACCTGA-------CAACAAGTTCTTCAACTTCCCTACTTGGAAGTGGCTGCCTGCCATGAGATAACCCCCTTTCTAATTTGTCCTGCCATGAACAATGCACCCAAGGCAT------CCTTCCTCTTACTCCATCTC-TCCTGGAGCCTGCAGAATGGAGCTCAAG---TTTCCTG-GAGCAGCCACTGTTCCTG---CATCTCCCCTTCTGCCTCGCGGGCTGCCAAGCCT--GCGTCCACC-GTGCGCATGAACTCCAGCATCAGTAGGTTTcatgcctgtgctccgtgctcctacctgggctcacgtgaatgtgctcttctctctttctgaaatgtccctttcctttgagcgattgcggaaatcctcctcatcttttacaactagtctcagatgcaccctccttcaggaagcctcctatgacaggcctgtctacacatggcccaaacttggtttcagatcattaaaacagaaag-aaaaaaatgaatggtgtgaagggaacaaacagatagcatgtggcatggttggaagctgtggtctgatctgtGGTAAGTCCTGAGACCACGGCT-TTCTTTGACTTTTGCTGCAGCCCTGAGAACACAGTGGGCCTGCTCAGGCATTTTGCTGCTCTTCTGATCAAGCCCTTTGTTTCTCTGCCTATCTTGTTTCCTGCTTTTCACTTTCTTGTTCTCACCTGGCTGATTTGTAAATA-ATA-AAATAACCGAAGCTAGTCAATTCCAGCTACTTAAGATAACTGTGTTTCCAGGGTATCTGT---TTTATGTGTAGAGAGGAAAAAATAAGTAGTCACAATCCTGGATTTTCTATGTGAATAAGTTTGCTTAGAGAGCAGCAGCTGTTAAAATATAAATGTGATATTTGAGTTCAAACGGGAGCA-GAAATTATACTCAGTGTGGGCCAAAGAAAGGCATTTCAACGACAGGGCTCTTTCATCTGGAGTGGC-GTGCCTAATTCTGATTTAGAGA---AAAGCAGGTCTGATATGGTGCGGTGGAAAAGGAGGCCTGGGGCTGGGCATCAGAAAATCAGCTTTCAAAC----ACTTTCTCCAGGTTGTAGCTGAGCAACTTGAGGCTCTTTAGTGAAATG-AAAAAATAGTAGGCGTCTTGTCCAGCTCAGAAGCTTATTGTCATAGTGTACACACAGATGGCTGAAGGCAGAAAACACCACACCAGTTCAGTTCCCCCCAGTGAAAGCTATCTTGCCTTGGTGGAAAGAAGTCACAAAATCTGA--AGGTTTATCATGAACAGGCAAAAGAGGTTCACTTGTTTTCGTGAT----TTAAAACATTTGGCTTAAATTGTG i ponAbe2.chr2a C 0 C 0 s rheMac3.chr13 133329804 1440 - 137160470 gtctggtACCGGCTTTGCCCTCCTTTCACAAGCTTAATGGCAATGCAGTTAAGT-CAAGGAC----CTGGATCAGAATTACAGCATGATGGAC---ACGCTCCATGTGTGCGCACACCCGTTCCTGGATAGCTTTTCAAG-GGTCTTCTCT--TTTCTGCCACCTG----------ACAAGTTCTCCAACTTCCCTACTTGGAAGTGGCTTCTTGCCATGAGATAA-ACCCTTTCTAATCTGTCCTCCCATGAGCAATGCACCCAGGGCAT------CCTTCCTCTTACTCCATCTCAACCTTGAGCCTGCAGAATGGAGCTCAAG---TTTCCTG-GAGCAGTCACGGTTCCTGCACTGTCTCCTCTTCTGCCTTGAGGGCTGCCAAGCCT--GCGTCCACC-GTGCGCATGAACTCTGCCATCAGTAGGTTTCATGCGTGTCCCCCATGCtcctacctgggctcacatgaatgtgctcttctctctttctgaaatgcccttttcctttgagcgattgtggaaatcctgctcatcttttacagctaatctcagatgcaccctccttctggaagcctcctctaacTGGCTTGGCTACACATGGCCCAGACTTGGTTTGAGATCATTAAAACAGCAGG--AAAAAATGAATGGTGTGAAGGGAACACACAGACAGCATGTGGCATGGTTGGAAGCTGTGGTCTGATCTATGGCGTGTCCTGAGACCACGGCTGTTCTTTGATTTTTGCTACAGCCCTGAGAACCCAGTGGACCTGCTCAGACGTCCTGCTGCTCTTCCGATCAAGCCCTTTGTTTCTCTGTCTGTCTTGTTTTCTGCTTTTCACTTTCTTGTTCTCACCTGTCTGATTTGTAAATA-ATA-AAATAATCAAAGTTAGACAATTCCAGCTACTTAAGATAACTGTGTTTCCAGGGAATCTGT---TTTATGTGTAGAGAGGAAAAAATAAGTAGTCACAATCCTGGATTTTCTATGTGAATAAGTTTGCTTAGAGAGCAGCAGCTGTTAAAATATAAATGTGATATTTGAGTTCAAACGGGAGCA-GAAATTATACTTAGTGTGGGCCAAAGAAAGGCATTTCAACGACAGGGCTCTTTCATCTGGAGTGGC-GTGCCTAATTCTGATTTAGAGA---AAAGCAGGTCTGATATTTTGCGGTGGAAAAGGAGGCCTGGGGCTGGGCATCAGAAAATCAGCTTTCAAAC----ACTTCCTCCAGGTTGTAGCTGAGCAACTTGAAGCTCTTTAGTGAAATG-AAAAAATAGTAGGCGTCTTGTCCAGCTCAGAAGCATATTGTCGCAGAGTACACACAGATGGCTGAAGGCAGAAAATACCACACCAGTTCAGTTCCCCCCAGTGAAAGCTATCTTGCCTTGGTGGAAAGAAGTCACAAAACGTGA--AGGTTTATCATGAACAGGCAAAAGAAGTTCACTTGTTTTCACGAT----TTAAAACATTTGGCTTAAACTCTG i rheMac3.chr13 C 0 C 0 s macFas5.chr13 105409713 1440 + 111193037 GTCTGGTACCGGCTTTGCCCTCCTTTCACAAGCTTAATGGCAATGCAGTTAAGT-CAAGGAC----CTGGATCAGAATTACAGCATGATGGAC---ACGCTCCATGTGTGCGCACACCCGTTCCTGGATAGCTTTTCAAG-GGTCTTCTCT--TTTCTGCCACCTG----------ACAAGTTATCCAACTTCCCTACTTGGAAGTGGCTTCTTGCCATGAGATAA-ACCCTTTCTAATCTGTCCTCCCATGAGCAATGCACCCAGGGCAT------CCTTCCTCTTACTCCATCTCAACCTTGAGCCTGCAGAATGGAACTCAAG---TTTCCTG-GAGCAGTCACGGTTCCTGCACTGTCTCCTCTTCTGCCTTGAGGGCTGCCAAGCCT--GCGTCCACC-GTGCGCATGAACTCTGCCATCAGTAGGTTTCATGCGTGTCCCCCATgctcctacctgggctcacatgaatgtgctcttctctctttctgaaatgcccttttcctttgagcgattgtggaaatcctgctcatcttttacagctaatctcagatgcaccctccttctggaagcctcctctaacTGGCTTGGCTACACATGGCCCAGACTTGGTTTGAGATCATTAAAACAGCAGG--AAAAAATGAATGGTGTGAAGGGAACACACAGACAGCATGTGGCATGGTTGGAAGCTGTGGTCTGATCTATGGCGTGTCCTGAGACCACGGCTGTTCTTTGATTTTTGCTACAGCCCTGAGAACCCAGTGGACCTGCTCAGACGTCCTGCTGCTCTTCCGATCAAGCCCTTTGTTTCTCTGTCTGTCTTGTTTTCTGCTTTTCACTTTCTTGTTCTCACCTGTCTGATTTGTAAATA-ATA-AAATAATCAAAGTTAGACAATTCCAGCTACTTAAGATAACTGTGTTTCCAGGGAATCTGT---TTTATGTGCAGAGAGGAAAAAATAAGTAGTCACAATCCTGGATTTTCTATGTGAATAAGTTTGCTTAGAGAGCAGCAGCTGTTAAAATATAAATGTGATATTTGAGTTCAAACGGGAGCA-GAAATTATACTTAGTGTGGGCCAAAGAAAGGCATTTCAACGACAGGGCTCTTTCATCTGGAGTGGC-GTGCCTAATTCTGATTTAGAGA---AAAGCAGGTCTGATATTTTGCGGTGGAAAAGGAGGCCTGGGGCTGGGCATCAGAAAATCAGCTTTCAAAC----ACTTCCTCCAGGTTGTAGCTGAGCAACTTGAAGCTCTTTAGTGAAATG-AAAAAATAGTAGGCGTCTTGTCCAGCTCAGAAGCATATTGTCGCAGAGTACACACAGATGGCTGAAGGCAGAAAATACCACACCAGTTCAGTTCCCCCCAGTGAAAGCTATCTTGCCTTGGTGGAAAGAAGTCACAAAACGTGA--AGGTTTATCATGAACAGGCAAAAGAAGTTCACTTGTTTTCACGAT----TTAAAACATTTGGCTTAAACTCTG i macFas5.chr13 C 0 C 0 s papAnu2.chr13 123119720 1441 - 128036923 GTCTGGTACCGGCTTTGCCCTCCTTTCACAAGCTTAATGGCAATGCAGTTAAGT-CAAGGAC----CTGGATCAGAATTACAGCATGATGGAC---ACGCTCCACGTGTGCACACACCCGTTCCTGGATAGCTTTTCAAG-GGTCTTCTCT--TTTCTGCCACCTG----------ACAAGTTCTCCAACTTCCCTACTTGGAAGTGGCTTCTTGCCATGAGATAA-ACCCTTTCTAATCTGTCCTCCCATGAGCAATGCACCCAGGGCAT------CCTTCCTCTTACTCCATCTCAACCTTGAGCCTGCAGAATGGAGCTCAAG---TTTCCTG-GAGCAGTCACGGTTCCTGCACCGTCTCCTCTTCTGCCTTGAGGGCTGCCAAGCCT--GCGTCCACC-GTGCACATGAACTCTGCCATCAGTAGGTTTCATGCGTGTCCCCCGTGCTCCCACCTGGGCTCACATGAATgtgctcttctctctttctgaaatGCCCTTTTCCTTTGAGCGATTGTGGAAATCCTGCTCATCGTTTACAGCTAATCTCAGATGCACCCTCCTTCTGGAAGCCTCCTCTAACTGGCTTGGCTACCCATGGCCCAGACTTGGTTTGAGATCATTAAAACAGCAGG--AAAACATGAATGGTGTGAAGGGAACACACAGACAGCATGTGGCATGGTTGGAAGCTGCGGTCTGATCTATGGTGTTTCCTGAGACCACGGCTGTTCTTTGATTTTTGCTACAGCCCTGAGAACCCAGTGGACCTGCTCAGACGTCCTGCTGCTCTTCCGATCAAGCCCTTTGTTTCTCTGTCTGtcttgttttctgcttttcactttcttgttCTCACCTGTCtgatttgtaaata-ata-aaataatcaaagttagacaattccagctacttaagaTAACTGTGTTTCCAGGGAATCTGT---TTTATGtgtagagaggaaaaaataagtaGTCACAATCCTGGATTTTCTATGTGAATAAGTTTGCTTAGAGAGCAGCAgctgttaaaatataaatgtgatatTTGAGTTCAAACGGGAGCA-GAAATTATACTTAGTGTGGGCCAAAGAAAGGCATTTCAACGACAGGGCTCTTTCATCTGGAGTGGC-GTGCCTAATTCTGATTTAGAGA---AAAGCAGGTCTGATATTTTGTGGTGGAAAAGGAGGCCTGGGGCTGGGCATTAGAAAATCAGCTTTCAAAC----ACTTCCTCCAGGTTGTAGCTGAGCAACTTGAAGCTCTttagtgaaatgaaaaaaatagtagcCATCTTGTCCAGCTCAGAAGCATATTGTCACAGAGTACACACAGATGGCTGAAGGCAGAAAATACCACACCAGTTCAGTTCCCCCCAGTGAAAGCTATCTTGCCTTGGTGGAAAGAAGTCACAAAACGTGA--AGGTTTATCATGAACAGGCAAAGGAAGTTCACTTGTTTTCACGAT----TTAAAACATTTGGCTtaaactctg i papAnu2.chr13 C 0 C 0 s chlSab2.chr14 102058967 1440 + 107702431 GTCTGGTACCGGCTTTGCCCTCCTTTCACAAGCTTAATGGCAATGCAGTTAAGT-CAAGGAC----CTGGATCAGAATTACAGCATGATGGAC---ATGCTCCATGTGTGCGCATATCCGTTCCTGGATAGCTTTTCAAG-GGTCTTCTCT--TTTCTGCCACCTG----------ACAAGTTCTCCAACTTCCCTACTTGGAAGTGGCTTCTTGCCATGAGATAA-ACCCTTTCTAATCTGTCCTCCCATGAGCAATGCACCCAGGGCAT------CCTTCCTCTTACTCCATCTCAACCTTGAGCCTGCAGAATGGAGCTCAAG---TTTCCTG-GAGCAGTCACGGTTCCTGCACCGTCTCCTCTTCTGCCTTGAGGGCTGCCACGCCT--GCGTCCACC-GTGCGCATGAACTCTGCCATCAGTAGGTTTCATGCGTGTCCCCCGTGCtcctacctgggctcacatgaatgtgctcttctctctttctgaaatgcccttttcctttgagcaatcgtggaaatcctgctcatcttttacagctaatctcagatgcaccctccttctggaagcctcctctaacTGGCTTGGCTACACATGGCCCAGACTTGGTTTGAGATCATTAAAACAGCAGG--AAAAAATGAATGGTGTGAAGGGAACACACAGACAGCATGTGCCATGGTTGGAAGCTGCGGTCTGATCTATGGCGTGTCCTGAGACCACGGCTGTTCTTTGATTTTTGCTACAGCCCTGAGAACCCAGTGGACCTGCTCAGGCGTCCTGCTGCTCTTCCGATCAAGCCCTTTGTTTCTCTGTCTGTCTTGTTTTCTGCTTTTCACTTTCTTGTTCTCACCTGTCTGATTTGGAAATA-ATA-AAATAATCAAAGTTAGACAATTCCAGCTACTTAAGATAACTGTGTTTCCAGGGAATCTGT---TTTATGTGTAGAGAGGAAAAAATAAGTAGTCACAATCCTGGATTTTCTATGTGAATAAGTTTGCTTAGAGAGTAGCAGCTGTTAAAATATAAATGTGATATTTGAGTTCAAACGGGAGCA-GAAATTATACTTAGTGTGAGCCAAAGAAAGGCATTTCAACGACAGGGCTCTTTCATCTGGAGTGGC-GTGCCTAATTCTGATTTAGAGA---AAAGCAGGTCTGATATTTTGTGGTGGAAAAGGAGGCCTGGGGCTGGGCATCAGAAAATCAGCTTTCAAAC----ACTTCCTCCAGGTTGTAGCTGAGCAACTTGAAGCTCTTTAGTGAAATG-AAAAAATAGTAGGCGTCTTGTCCAGCTCAGAAGCATATTGTCACAGAGTACACACAGATGGCCGAAGGCAGAAAATGCCACACCAGTTCAGTTCCCCCCAGTGAAAGCTATCTTGCCTTGGTGGAAAGAAGTCACAAAATGTGA--AAGTTTATCATGAACAGGCAAAAGAAGTTCACTTGTTTTCACGAT----TTAAAATATTTGGCTTAAACTCTG i chlSab2.chr14 C 0 C 0 s calJac3.chr14 5668930 1422 - 108792865 gtCTGATACTGGCTTTGCCC-CTCATCACAAGCTTGATGGCAATGAAGTTAAAT-CAAGTACCTATCTGGATCAGAATCACGGCATGAGGGAA---ACGATCCATGTACCTGC----TCGTTCCTGGAGAGCTTTTCAAG-GGTCTTCTCT--TTTCTCCCGCCTGA-------CAACAAGTTCTCCACCTTCCCTACTTGGAAGTGGCTGCTTGGCAGGAGATAA-CCCCCTTCTACTCTGTCCTCCCAAGAACAATGCCCCCAGGGCGT------CCTTCCTCTTACTCCATCTC-CCCTTGAGGCTGCAGAATGGATCTCAAG---TTTCCTG-GAGCATCCACATTTCCTGCGCCATCTCCCCTTCTACCCTAAGGGCTGCAAAGCCT---CTTCCACCTGCGCATGTGAACTCCGG-ATCAATAGGTTTCATGCCTGGGCCCCATGttcctacctgtgctcacatgaaggtgcttctctctctttctgaaatgcccctttcctttgagcaactgtggaaatcctgctcatcttttatgactagtctcagatgcaacctccttctggaagcctcccctgacTGGCCCATACACACATGGCCCAAACTTGATTTCAGATCACTAAAAGAGAAGA----AGAAGGAGTGGTGTGAAGGACACTCATGGGCAGCATGTGGCATGCTGGGAAGCTGTGGTCTGATCTACAGCATGTCCTGAGACCACAGCCATGCTTTGAGTCTTGCTGCAGCCCTGAGAACCCAGTGGACCTGCTCAGGCATCCTGCTGCTCTTCGGATCAAGCCCTTTGCTTCTCTGCCTGTCTTATTTCCTGCTTTTCACTTTCTTGTTCTCACCTGGCTGATTTGTAAACA-ATA-AAATCACCAAAGTTAGACAATTCCAGCTACTTAAGATAACTGCATTTCCAGGGAATCTGC---TTTAGGTGTAGACAGGAAAAAATAAGTAGTCACAATCCTGGATTTTCTATGTGAATAACTTTGCTTAGAGAGCAGCAGCTGTTAAAATATAAATGTGATATTTGAGTTCAAATGGGAGCA-GAAATTATACTTAGTGTGGGCCAAAGAAAGGCACTTCCACGACAGGGTTCTTTCATCTGGAGTGGT-GTGCCTAATTCTGATTTAGAGA---AAAGCAGGTCTGATAC--TGCAGCAGCGAAGGAGGCCTGGGGCTGGGCGTCAGAAAATCAGCTTTCAAAC----ACTTCCTCCAGGTTGTAGCTGAGCAACGTGAGGCTCTTTAGTGAAATG-AAAAAATCGTAGGCGTCTTGTCCAGCTCAGACGCATATTGTCACAGTGCACACACAGACGGCTG-AGGCTGAAAA-------------CAGTTCCCCCCAATGAAACCCATCTTGCCTCGGTGGAAAGAAGTCACAAAATCTGA--AGGTTTACCATGAGCAGACAAGGGACGTTAACTTGTTTTCATGAT----TTAAAACATTTGGCTTAAACTGTG i calJac3.chr14 C 0 C 0 s canFam3.chr17 60755357 1311 - 64289059 GCCTGCTACCCGCTTCATTCTCC--TCACGAGGCGGGGAACCTCCCAGTCATGTGCTGGCAC----CCGG------------GGGTGGGGGCCTTTCCGCCCTGCGCTGGTGCACACCCCCGCCTGGATGGCTTTTGAAGTAGCCACCTCTGATTTCTGCCCCCCACCCCCCCTCCGCCAGCTTTCCTACTTCCTGCCCT--AAGTGCCTTTCTGCCTGGGGTCAATCCCTTTTCCACTCTGCCTTCCCCAGAACAATGTGCTCGGGAAGTGGGAAGGATCCCCCCCACTTCCTGCC--CCCTCAGCCTGCAGACCGGAGCTCCAGGACTTTGTTGAGAGTGGCCCTGCGCAGGGCACGGTCTAC-AGGCCACCTTGCTGGCCTCCCGGCCCCACTCCCCACT-GTGCATCCGCACCTCCACGCC------------GCTTATATCCCACGGCCGCTCCCAGGC------------------------TTCTGG----------CTCCTTGGGC---TGGAGaagtcctg-----------------gcctcaggtatcacctcctccaggaagccttccctgactggcctgtagacagggGGTCCAAACTTGGTCTCAGGTCACTCAAATAGGAGG---GAATGTGCCCGCGGGGAGGAGAACACACCGGCAGCCTCTCCCACTATGTGGATCTGCGGTCTGGTCTGTGGTCTGTCCTGAGG-CACA-------------TCTTGCTGCAACCACAGGGCCCCCCTT------------CGTCCCGCCCGCCTTCAGCCCTGCCCCTTCACTTCTCTGCCCACCTTCCTTCTTGCCTTTCACTTTCTTGTTCTTAACTGGCCAATTCATAAATGCGTACAGATAACCAAAGTTAGACAATTGCGGCTACCTAAGAAAATTATGTTTCCAGGGAATTTGTGTGTTTGTGTGTGTGGGGGGAGA-------------GATTCCGAATCTTCTACATGAATATGTTTGCTTAGGGAGTAGCAGCTGTTAAAATACAAATGTGGTTTTTGCCTTCAGACTAGAGCAGGAAATCATGCACAGTGTGG----------------TCTGCG-CGGGGCTCTTTCATCTGGGGGCTCTGTGCCTAACTCTGATTTAGGGACAGAGAGTAGGGCGGCTGG--TGGAGTGGACTCCCCGGCCTGG---CGGGGGTCGCAAAGCCCCCTCTCACCCTGCTCCTCCCTCCAGCCCCTGTCACTGGAAGTCGAGGCCCTTCA-CCAAGTG-GAAAGATAATACCCGTCTCCCCCAGTC------------------GGGTGCA---GCATCGATGAAGGCGACGGG---CCCACAGACCCGGGCTTGGCCAG---GAGGTGTCTGGCCTCCACG---AGAAGTGACAGCCCTTTGCCGGGTTTATCACCAAAAGGC-GGGGAGGCTCATTTCCTTCCACGGTCAGGTCGGAGCATCCGGCGGGGTGTGCG i canFam3.chr17 I 55 I 126 e nomLeu3.chr19 76401121 491 - 81552678 I a score=169035.000000 s hg38.chr1_KI270765v1_alt 30671 76 + 185285 TATCTCTCCATTTTAAATGTAAATTATAATAGGGAAACAGGAGGGAAATATGCAAGATTCTGGAAAACCTGAAGTT s panTro4.chr1_AACZ03149435_random 135955 76 + 173505 TATCTCTCCATTTTAAATGTGAATTATAATAGGGAAACAGGAGGGAAATATGCAAGATTCTGGAAAACCTGAAGTT i panTro4.chr1_AACZ03149435_random C 0 I 3793 s ponAbe2.chr2a 107080433 76 + 113028656 TCTCTCTCCATTTTAAATGTAAATTATAATAGGGAAACAGGAGGGAAATATGCAAGATTCTGGAAAACCTGAAGTT i ponAbe2.chr2a C 0 C 0 s rheMac3.chr13 133331244 75 - 137160470 TCTCTCTCCATTTTAAATGTAAATTAGAATAGGGAAACAGGA-GGAAATATGCAAGATTCTGGAACACCTGAAGTT i rheMac3.chr13 C 0 C 0 s macFas5.chr13 105411153 75 + 111193037 TCTCTCTCCATTTTAAATGTAAATTAGAATAGGGAAACAGGA-GGAAATATGCAAGATTCTGGAACACCTGAAGTT i macFas5.chr13 C 0 C 0 s papAnu2.chr13 123121161 75 - 128036923 tctctctccattttaaatgtaaattagaatAGGGAAACAGGA-GGAAATATGCAAGATTCTGGAACACCTGAAGTT i papAnu2.chr13 C 0 C 0 s chlSab2.chr14 102060407 75 + 107702431 TCTCTCTCCATTTTAAATGTAAATTAGAATAGGGAAACAGGA-GGAAATATGCAAGATTCTGGAACACCTGAGGTT i chlSab2.chr14 C 0 C 0 s calJac3.chr14 5670352 75 - 108792865 TCTCTTTCCA-TTAAAATTTAAATTATCATAGGGAAACAGGAAGGAAATGTGCAAGATTCTGGGAAACCTGAAGTT i calJac3.chr14 C 0 C 0 e canFam3.chr17 60756668 126 - 64289059 I e nomLeu3.chr19 76401121 491 - 81552678 I a score=150068.000000 s hg38.chr1_KI270765v1_alt 30747 74 + 185285 TCCATGTTTATC----TTTTCTTTAGTTCCTTGCTCTTTAGAGTCAACCAACCCATTCCCTAGATATAGTTATAAAAA s panTro4.chr1_AACZ03149435_random 139824 74 + 173505 TCCATGTTTATC----TTTTCTTTAGTTCCTTGCTCTTTAGAGTCAACCAACCCATTCCCTAGATATAGTTATAAAAA i panTro4.chr1_AACZ03149435_random I 3793 C 0 s ponAbe2.chr2a 107080509 74 + 113028656 TCCATGTTTATC----TTTTCTTTAGTTCCTGGCTCTTTAGACTTAACCAACCCATTCCCTAGATTTAGTTATAACAA i ponAbe2.chr2a C 0 C 0 s rheMac3.chr13 133331319 76 - 137160470 TCCATGTTTTTC--TTTTTTTTTTAGTTCCTGGCTCTTTAGAATTAACCAACACATTCCCTAGGTATAGTTATAAAAA i rheMac3.chr13 C 0 C 0 s macFas5.chr13 105411228 78 + 111193037 TCCATGTTTTTCTTTTTTTTTTTTAGTTCCTGGCTCTTTAGAATTAACCAACACATTCCCTAGGTATAGTTATAAAAA i macFas5.chr13 C 0 C 0 s papAnu2.chr13 123121236 76 - 128036923 Tccatgtttatc--ttttttttttagttcctggCTCTTTAGAATTAACCAACACATTCCCTAGGTATAGTTATAAAAA i papAnu2.chr13 C 0 C 0 s chlSab2.chr14 102060482 78 + 107702431 TCCATGTTTATCTTTTTTTTTTTTAGTTCCTGGCTCTTTAGAATTAACCAACACAGAGTCTAGGTATAGTTATAAAAA i chlSab2.chr14 C 0 C 0 s calJac3.chr14 5670427 74 - 108792865 TCTATGTTTATC----TTTTCTTTGGTTCCTGACTTTTTAGATTTAATCAGTCAATTCCCTAGATCTAGTTATAAAGA i calJac3.chr14 C 0 C 0 e canFam3.chr17 60756668 126 - 64289059 I e nomLeu3.chr19 76401121 491 - 81552678 I a score=705509.000000 s hg38.chr1_KI270765v1_alt 30821 288 + 185285 ATGGCTGGGGTAAGAAAAACAAGTTCGGTGATATTTTTAAAACTGTATGCACAGTCACTTGGAGACCCTTGAATGATGTTAGGAGACTGAGCTTCCCATACTCACTGGGACACACACAGTTGCTCTTGTTTGTAAGAGAGGACGCTTCT-GAAGTGTCATTTACTCTGTTGCTAGTATCAGCCTGCCTTCCCCTTGACCCCTGCCTTGTGGCCACCACTGTATCTCATGTCCACACCCTTCCTTGGCTGGGGCCCTGGAAGCCAGGGCATACTGAGTGGGACAGCTGGC s panTro4.chr1_AACZ03149435_random 139898 288 + 173505 ATGGCTGGGGTAAGAAAAACAAGTTCGGTGATATTTTTAAAACTGTATGCACAGTCACTTGGAGACCCTTGAATGATGTTAGGAGACTGAGCTTCCCATACTCACTGGGACACACACAGTTGCTCTTGTTTGTAAGAGAGGACGCTTCT-GAAGTGTCATTTCCTCTGTTGCTAGTATCGGCCTGCCTTCCCCTTGACCCCTGCCTTGTGGCCACCACTGTATCACATGTCCACACCCTTCCTTGGCTGGGGCCCTGGAAGCCAGGGCATACTGAGTGGGACAGCTGGC i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chr2a 107080583 288 + 113028656 ATAGCTGGGGTAAGAAAAACGAGTTTGGTGATATTTTTAAAACCGTATGCACAGTCACTTGGAGACCCTTGAATGATGTTAGGAGACTGAGCTTCCCATACTCACTGGGACACATACAGTTGCTCTTGTTTGTAAGAGAGGACTCTTCT-GAAGTGTCATTTCCTCTGTTGCTAGTATCGGCCTGCCTTCCCCTTGACCCCTGCCTTGTGGCCACCACTGTATCACATGTCCACACCCTTCCTTGGCTGGGGCCCTGGAAGCCGGGGCATACTGAGTGGGACAGCTGGC i ponAbe2.chr2a C 0 C 0 s rheMac3.chr13 133331395 287 - 137160470 ATGGCTGGGGTAAGAATAACGAGTTT-GTGGTATTTTTAAAATTGCATGCACAGTCACTTGGAGAACCTTGAATGATGTTACGAGACTGAGCTTCCCATACTCACTGGGACACACACAGTTGCTCTTGTTTGTAAGAGAGGACGCTTCT-GAAGTGTCATTTCCTCTGCTGCTAGTATCGGCCTGCCTTCCCCTCGACCCCTGCCGTGTGGCCACCGCTGTATCACATGTCCACGCCCGTCCCTGGCTGGGGCCCTGGAAGCCAGGGCGTACCGAGTGGGACAGCTGGC i rheMac3.chr13 C 0 C 0 s macFas5.chr13 105411306 287 + 111193037 ATGGCTGGGGTAAGAATAACGAGTTT-GTGGTATTTTTAAAATTGCATGCACAGTCACTTGGAGAACCTTGAATGATGTTACGAGACTGAGCTTCCCATACTCACTGGGACACACACAGTTGCTCTTGTTTGTAAGAGAGGACGCTTCT-GAAGTGTCATTTCCTCTGCTGCTAGTATCGGCCTGCCTTCCCCTCGACCCCTGCCGTGTGGCCACCGCTGTATCACATGTCCACGCCCGTCCCTGACTGGGGCCCTGGAAGCCAGGGCGTACCGAGTGGGACAGCTGGC i macFas5.chr13 C 0 C 0 s papAnu2.chr13 123121312 287 - 128036923 ATGGCTGGGGTAAGAATAACgagttt-gtggtatttttaaaattgtatgcaCAGTCACTTGGAGACCCTTGAATGATGTTATGAGACTGAGCTTCCCATACTCACTGGGACACACACAGTTGCTCTTGTTTGTAAGAGAGGACGCTTCT-GAAGTGTCATTTCCTCTGCTGCTAGTATCGGCCTGCCTTCCCCTTGACCCCTGCCGTGTGGCCACCGCTGTATCACATGTCCACGCCCTTCCCTGGCTGGGGCCCTGGAAGCCAGGGCGTACTGAGTGGGACAGCTGGC i papAnu2.chr13 C 0 C 0 s chlSab2.chr14 102060560 287 + 107702431 ATGTCTGGGGTAAGAATAACGAGTTT-GTGATATTTTTAAAATTGTATGCACAGTCACTTGGAGACCCTTGAATGATGTTACGAGACTGAGCTTCCCATACTCACTGGGACACACACAGTTGCTCTTGTTTGTAAGAGAGGACGCTTCT-GAAGTGTCATTTCCTCTGCTGCTAGTATCAGCCTGCCTTCCCCTTGACCCCTGCCGTGTGGCCACCGCTGTATCACATGTCCACACCCTTCCCTGGCTGGGGCCCTGGAAGCCAGGGCGTACTGAGTGGGACAGCTGGC i chlSab2.chr14 C 0 C 0 s calJac3.chr14 5670501 268 - 108792865 ATGGCTGGGGTAAGAAAAAGGAGTTTGGCGCTATTTTTAAAACCCTATGCACAGTCACTTGGAGACCCTTGAATGACGTGAGAGGGCGACGCTTGTTATACTCACTGG-------------------GTTTGTAAGACAGGACGCTTCT-GAAGTGTCATTTCCTCTGTTTCTAGTATT-GCCTGCTGTCCTCTTGACCCCTGCCATGTGGCCACCACTGTATCACATGTCCACACCCTTCCCTGGCTGGGGCCCTGGAAACCCGGGCATACTGAGTGGGACAGCTGGC i calJac3.chr14 C 0 C 0 s canFam3.chr17 60756794 243 - 64289059 GGGGCTGCGGCCTGCCCGGCGAGCTGGGCGCTATTTTTACAAGCGTCCACGGAGTGACT--GGGCCCCCGGAATGGTGTGCGAAGCCTGAGTCAGCC-----------------------------------TGCGCGGGGACACTCCTCAAAGTGTCATTTCCTCTGCTGCCATAATCGGC--GACATTCGCTTAACCCCTGCGCGGTGACGGCC-CGGTGACA-ACAGCCACACCCGCCC--GGC---GACCCTGGAACCCCTGGCGCGCTGAGTGGGACAGCTGGC i canFam3.chr17 I 126 I 1982 e nomLeu3.chr19 76401121 491 - 81552678 I a score=25902.000000 s hg38.chr1_KI270765v1_alt 31109 12 + 185285 AGGGGCTCGGGC s panTro4.chr1_AACZ03149435_random 140186 12 + 173505 AGGGGCTCGGTC i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chr2a 107080871 12 + 113028656 AGGGGCTCGGGC i ponAbe2.chr2a C 0 C 0 s rheMac3.chr13 133331682 12 - 137160470 AGGGGCTCGGGC i rheMac3.chr13 C 0 C 0 s macFas5.chr13 105411593 12 + 111193037 AGGGGCTCCGGC i macFas5.chr13 C 0 C 0 s papAnu2.chr13 123121599 12 - 128036923 AGGGGCTCAGGC i papAnu2.chr13 C 0 C 0 s chlSab2.chr14 102060847 12 + 107702431 AGGGGCTCGGGC i chlSab2.chr14 C 0 C 0 s calJac3.chr14 5670769 12 - 108792865 GAGGGCTGGGGC i calJac3.chr14 C 0 I 994 e canFam3.chr17 60757037 1982 - 64289059 I e nomLeu3.chr19 76401121 491 - 81552678 I a score=535398.000000 s hg38.chr1_KI270765v1_alt 31121 288 + 185285 TGGTGCGGTCACTGACAAAGAATCCTCCTCCGGC--------CTGTCAGTGGCAACTCTGCAGCTGTTGGCCCACATACCTGGCATACCTCCATCTCCAGGCAACTGCTGGGTGTGGGCAGGGATCCCAGCAGCACCCACTGGCGTCGGCTGCCTCCCACAATGCCAGCCCCCAGGTAGCCAAGAGGAGT-GTCCAGGTGTCGGGGAGAGAAGCTGAGAGAAGCAGCGAGGGCCGTGGTTGTGGGAGAGAGGAGGAAGTTGGGAGGGTCACCCACACACTTACGGAAAGCTTGGTGC s panTro4.chr1_AACZ03149435_random 140198 289 + 173505 TGGTGCGGTCACTGACAAAGAATCCTCCTCCGGC--------CTGTCAGTGGCAACTGTGCAGCTGTTGGCCCACATACCTGGCATACCTCCATCTCCAGGCAACTGCTGGGTGTGGGCAGGGATCCCAGCAGCACCCACTGGCGTCGGCTGCCTCCCACAATGCCAGCCCCCAGGTAGCCAAGAGGAGTCATCCAAGTGTCGGGGAGAGAAGCTGAGAGAAGCAGCGAGGGCGGTGGTTGTGGGAGAGAGGAGGAAGTTGGGAGGGTCACCCACACACTTACGGAAAGCTTGGTGC i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chr2a 107080883 289 + 113028656 TGGTGCGGTCACTGACAAAGAATCCTCCTCCAGC--------CTGTCAGTGGCAACTCTGCAGCTGTTGGCCCACATACCTGGCATACCTCCATCTCCAGGCAACTGCTGGGTGTGGGCAGGGATCCCAGCAGCACCCACTGGTGTCGGCTGCCTCCCACAATGCCAGCCCCCAGGTAGCCAAGAGGAGTCATCCAGGTGTCGGGGAGAGCAGCTGAGAGAAGCAGCGAGGGCGGGGGTTGTGAGAGAGAGGAGAAAGTTGGGAGGGTCGCCCACACACTCAAGGAAAGCTTGGTGC i ponAbe2.chr2a C 0 C 0 s rheMac3.chr13 133331694 297 - 137160470 TGGTGTGGTCACTGACAAAGAATCCTCCTCCGGCCTGTCAGTCTGTCAGTGGCAGCTCTGCAGCTGTTGGCCCGCATACCTGGCATACCTCCATCTCCAGGCAACTGCTGGGTGTGGGCGGGAATCCCAGCAGCACCCACTGGCTTCGGCTGCCTCCCACAATGCCAGCCCCCAGGTAGCCAAGAGGAGTCGTCCAGGTGTCAGGGAGAGCAGCTGAGAGAAGCATGGAGGGCGGTGGTTGTGGGAGAGAGGAGGAAGTTAGGAGGGTCGCCCACACACTTTAGGAAAGCTTGGTGC i rheMac3.chr13 C 0 C 0 s macFas5.chr13 105411605 297 + 111193037 TGGTGTGGTCACTGACAAAGAATCCTCCTCCGGCCTGTCAGTCTGTCAGTGGCAGCTCTGCAGCTGTTGGCCCGCATACCTGGCATACCTCCATCTCCAGGCAACTGCTGGGTGTGGGCGGGAATCCCAGCAGCACCCACTGGCTTCGGCTGCCTCCCACAATGCCAGCCCCCAGGTAGCCAAGAGGAGTCGTCCAGGTGTCAGGGAGAGCAGCTGAGAGAAGCATGGAGGGCGGTGGTTGTGGGAGAGAGGAGGAAGTTAGGAGGGTCGCCCACACACTTTAGGAAAGCTTGGTGC i macFas5.chr13 C 0 C 0 s papAnu2.chr13 123121611 297 - 128036923 TGGTGTGGTCACTGACAAAGAATCCTCCTCCGGCCTGTCAGTCTGTCAGTGGCAGCTCTGCAGCTGTTGGCCCGCATACCTGGCATACCTCCATCTCCAGGCAACTGCTGGGTGTGGGCGGGAATCCCAGCAGCACCCACTGGTTTCGGCTGCCTCCCACAATGCCAGCCCCCAGGTAGCCAAGAGGAGTCGTCCAGGTGTCGGGGAGAGCAGCTGAGAGAAGCATGGAGGGCGGTGGTtgtgggagagaggaggaagttAGGAGGGTCGCCCACACACTTAAGGAAAGCTTGGTGC i papAnu2.chr13 C 0 C 0 s chlSab2.chr14 102060859 289 + 107702431 TGGTGTGGTCACTGACAAAGAATCCTCCTCCGGC--------CTGTCAGTGGCAGCTCTGCAGCTGCTGGCCCGCATACTTGGCATACCTCCACCTCCAGGCAACTGCTGGGTGTGGGCGGGAATCCCAGCAGCACCCACTGGCTTTGGCTGCCTCCCACAATGCCAGCCCCCAGGTAGCCAAGAGGAGTTGTCCAGGTGTCGGGGAGAGCAGCGGAGAGAAGCATCGAGGGTGGTGGTTGTGGGAGAGAGGAGGAAGTTGGGAGGGTCGCCCACACACTTAAGGAAAGCTTGGTGC i chlSab2.chr14 C 0 C 0 e calJac3.chr14 5670781 994 - 108792865 I e canFam3.chr17 60757037 1982 - 64289059 I e nomLeu3.chr19 76401121 491 - 81552678 I a score=591268.000000 s hg38.chr1_KI270765v1_alt 31409 287 + 185285 AAAGAGAAAGAGACCGCCTTTCAAAAACAGCCCTGCTCTACCATCCTGAACCTAGTCCTGATCATGCCTTGAAAAAATAGATTCCCAAGTGGGTCTTGCCTaaataatgtaagtggacgtgggaaaagcacggacttgtca-----gcagtt--tcagaaggttccttgctgctggtgactttggaaaactcccttaaccagcgtgagcctccatgtctgcctccataTCCTCCTCCAGAGCAGGGGACTGTGTACCTTCCCCCAGGGAGGCCTGGAAGGATTTTGTTGGGTTT s panTro4.chr1_AACZ03149435_random 140487 275 + 173505 AAAGAGAAAGAGACCGCCTTTCAAAAACAGCCCTGCTCTACCATCCTGAACCTAGTCCCGATCATGCCTTGAAAAAATAGATTCCCAAGTGGGTCTTGCCTAAATAATGTAAGTGGACgtgggaaaagcacggacttgtca-----gcagtt--tcagaaggttccttgctgctggtgactttggaaaactcccttaaccagcgtgagcctccatgtc------------ctcctccagagcaggggactgtgtaccttcccccagggAGGCCTGGAAGGATTTTGTTGGGTTT i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chr2a 107081172 275 + 113028656 AAAGAGAAAGAGACTGCATTTCAAAAATAGTCCTGCTCTACCATCCTGAACCTAGTCCCGATCCTTTCTTGAAGAAGTAGCTTCCCAAGTGGGTCTTGCCTaaataatgtatgtggacgtgggaaaagcacggacttggca-----gcagtt--tcagaaggttccctgctgctggtgactttggaaaagtcccttaaccagcgtgagcctccatgtc------------ttcctccagagcaggggactctgtaccttccccccaggaggcctggaaggattttgttaggatT i ponAbe2.chr2a C 0 C 0 s rheMac3.chr13 133331991 271 - 137160470 AAAGAGAAAGAGGCTGTGTTTCAAAAACAGCCCTGCTCCACCATCCTGAACCTAGTCCCGATCATTCCTTGAAGAAGTAGTTTCCCAAGTGGGTCTTGCCTaaacaatgtatgtggacatgggaaaagcatggacttggca-----gcagtt--tcagaaggttccctgctgctggtgactttggaaaagtcccttaaccagtgtgatcttccatgtc------------ctcctccagagcaggggactgtgtaccttccc----ggaggcctggaaggattttgttaggTTT i rheMac3.chr13 C 0 C 0 s macFas5.chr13 105411902 271 + 111193037 AAAGAGAAAGAGGCTGTGTTTCAAAAACAGCCCTGCTCTACCATCCTGAACCTAGTCCCGATCATTCCTTGAAGAAGTAGTTTCCCAAGTGGGTCTTGCCTaaacaatgtatgtggacatgggaaaagcatggacttggca-----gcagtt--tcagaaggttccctgctgctggtgactttggaaaagtcccttaaccagtgtgagcttccatgtc------------ctcctccagagcaggggactgtgtaccttccc----ggaggcctggaaggattttgttaggTTT i macFas5.chr13 C 0 C 0 s papAnu2.chr13 123121908 266 - 128036923 --AGAGAAAGAGACTGCGTTTCAAAAACAGCCTTGCTCTACCATCCTGAACCTAGTCCCGATCATTCCTT---GAAGTAGTTTCCCAAGTGGGTCTTGCCTAAACAATGTATGTGGACATGGGAAAAGCATGGACTTGGCA-----GCAGTT--TCAGAAGGTTCCCTGCTGCTGGTGACTTTGGAAAAGTCCCTTAACCAGTGTGAGCTTCCATGTC------------CTCCTCCAGAGCAGGGGACTGTGTACCTTCCC----GGAGGCCTGGAAGGATTTTGTTAGGTTT i papAnu2.chr13 C 0 C 0 s chlSab2.chr14 102061148 271 + 107702431 AAAGAGAAAGAGACTGCGTTTCAAAAACAGCCCTGCTCTACCATCCTGAACCTAGTCCCGACCATTCCTTGAAGAAGTAGTTTCCCAAGTGGGTCTTGCCTAAAcgatgtatgtggacatgggaaaagcatggacttggca-----gcagtt--tcagaaggttccctgctgctggtgactttgggaaagtcccttaaccagtgtgagcttccatgtc------------ctcctccagagcagggggctgtgtaccttccc----ggaggcctggaaggattttgttaggTTT i chlSab2.chr14 C 0 C 0 s calJac3.chr14 5671775 282 - 108792865 aaaaaaaaaaaaaTCCCCAAAACAAACCAGCCCTGCTCTGCCATCCTGAACCTCGTCATGGTCATTCCTTGAATAAATAGCTTCCCATGTGGGTCTTGCCTAaatatggcatgtggacgtgggaaaagcacacactcgacacgcctgtggttcacttcaagcttctctgctgctggtgactttggaaaagtcccttaccctgtctgagcctccatctc------------ctcctcCAGAGCAGGGCACTGGGTACCTTCCACCAGGGAGGCCTGGAAAGATTTTGTTAGGTTT i calJac3.chr14 I 994 C 0 e canFam3.chr17 60757037 1982 - 64289059 I e nomLeu3.chr19 76401121 491 - 81552678 I a score=571369.000000 s hg38.chr1_KI270765v1_alt 31696 247 + 185285 TCCTGATAAACTCACTCAGTGGATG-AAAGGGGGGATGTTTGTAAAG-TTGTCATATTTATGTTGAATGTAAGATCACTGAACTCTCACTG----ATATGCAGAAATCAACCTTAACGAGCGCT-ATCTGC-AACACAAGAGATTTGTTTTCATGAGTACACACCTAGACGATGAACCTGTGCACACGAC--TTCATAC-TTTAAAAATGTCTCTTTTTTA---TCTTGCAGTTCTTTAAATACTAACAAGAA---TGGTTTTT------------- s panTro4.chr1_AACZ03149435_random 140762 247 + 173505 TCCTGATAAACTCACTCAGTGGATG-AAAGGGGGGATGTTTGTAAAG-TTGTCATATTTATGTTGAATGTAAGATCACTGAACTCTCACTG----ATATGCAGAAATCAACCTTAACGAGCGCT-ATCTGC-AACACAAGAGATTTGTTTTCATGAGTACACACCTAGACGATGAACCTGTGCACACGAC--TTCACAC-TTTAAAAATGTCTCTTTTTTA---TTTTGCAGTTATTTAAATACTAACAAGAA---TGGTTTTT------------- i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chr2a 107081447 247 + 113028656 TCCTGATAAACTCACTCAGTGGATG-AAAGGGGGGATGTTTGTAAAG-TTGTCATATTTATGTTGAATGTAAGATGATTGAACTCTCACCA----ATATGCAGAAATCAACCTTAACGAGCGCT-ATATGC-AACACAAGAGATTTGTTTTCATGAGTACACACCTAGAAGATGAACCTGTGCACACCAC--TTCACAC-TTTAAAAATGTCTCTTTTTTA---TTTTGCAGTTCTTTAAATACTAACAAGAA---TGGTTTTT------------- i ponAbe2.chr2a C 0 C 0 s rheMac3.chr13 133332262 249 - 137160470 TCCCGATAAACTCACTCAGTGGATG-AAAGGGGGGACGTTTGTAAAG-TTGTCATATTTATGTTGAATGTAAGATCATTGAACTCTCACTG----CTATGCAAAAATCAACGTTAACGAGCGCC-ATGTGC-AACAAAAGAGATTTGTTTTCATGAGTACACACCTAGACGGTGAAACTGTGCACACACCAGTTCACAC-TTTAAAAATGTCTCTTTTCTA---TTTTACATTTCTTTGAAGACCAACAAGAA---TGGTTTTT------------- i rheMac3.chr13 C 0 C 0 s macFas5.chr13 105412173 249 + 111193037 TCCCGATAAACTCACTCAGTGGATG-AAAGGGGGGACGTTTGTAAAG-TTGTCATATTTATGTTGAATGTAAGATCATTGAACTCTCACTG----CTATGCAAAAATCAACGTTAACGAGCGCC-ATGTGC-AACAAAAGAGATTTGTTTTCATGAGTACACACCTAGACGGTGAAACTGTGCACACACCAGTTCACAC-TTTAAAAATGTCTCTTTTCTA---TTTTACATTTCTTTAAAGACCAACAAGAA---TGGTTTTT------------- i macFas5.chr13 C 0 C 0 s papAnu2.chr13 123122174 249 - 128036923 TCCCGATAAACTCACTCAGTGGATG-AAAGCGGGGACGTTTGTAAAG-TTGTCATATTTATGTTGAATGTAAGATCATTGAACTCTCACTG----CTATGCAAAAATCAACGTTAACGAGCGCT-ATGTGC-AACAAAAGAGATTTGTTTTCATGAGTACATGCCTAGACGGTGAAACTGTGCACACACCAGGtcacac-tttaaaaatgtctcttttcta---ttttacatttctttaaagacCAACAATAA---TGGTTTTT------------- i papAnu2.chr13 C 0 C 0 s chlSab2.chr14 102061419 249 + 107702431 TCCTGATAAACTCACTCAGTGGATG-AAAGGGGGGATGTTTGTAAAG-TTGTCATATTTATGTTGAATGTAAGATCATTGAACTCTCACTG----CTATGCAAAAATCAATATTAACAAGCGCT-ATGTGC-AACAAAAGAGATTTGTTTTCACGAGTACACACCTAGACGATGAAACTGTGCACACAACAGTTCACAC-TTTAAAAACGTCTCTTTTCTA---TTTTACATTTCTTTAAATACCAACAAGAA---TGGTTTTT------------- i chlSab2.chr14 C 0 C 0 s calJac3.chr14 5672057 255 - 108792865 TCCGGATAAACTCACTCAGTAGATGAAAAGGGGGAATGTGTGTAAAGCTTGTCATATTTATGTTGAATATAAGATCACTAAACTCTCACTGATATATATGCAAAAGTCAATCTTAAGGAGTGCT-ATATGCTAACAAAAGAGATTTGTTTTAATGAGTACATACCTAGACAATGAAGCTGTACACAC--CAGTTCATACTTTTAAAAATGTCTCTTTTCTA---TTTCACATTTATTTACATACTAACAAGAA---TGGTtttt------------- i calJac3.chr14 C 0 I 250 s canFam3.chr17 60759019 246 - 64289059 TCCTGGTCCATTTAGTGAATGGAGG-GAAGGGGAGTGTTTTGTGAAGCTTAGCACATTTAAGTCAAATTTTAGACCATT--ACCCCAATCT----GTGTGTAGGCCGGAGTCCTGGAGGGAGCTCACTTTT-AACAC---AGGCTGATTTTCATGAGCACACACCCAGCCAGT-------------------TTACTTT-TTTAAAGATTTCCCTTTTTAAAATTTTTCCATTTCTTCAAATACCAGTGAGAAGGGTAGTTTTTTTTTTCCTATTTT i canFam3.chr17 I 1982 C 0 e nomLeu3.chr19 76401121 491 - 81552678 I a score=758479.000000 s hg38.chr1_KI270765v1_alt 31943 360 + 185285 AAAAGTGttttcaaatgtgaaaaaatacatatgacataaaattgatca--ttaacca-cttaagatgtgcgcaggtcagtggcatcatgcacgttg---acagtg------ctgtgaagccatgaccaccatccagccacaga-accctttcatcttgcaaaattcaaaccctgcacccactgaacaacaac--cccatttctccttccctccagcccctggcaagcaccattctattttctcttgctatacatttgactattccaggtactttatat--------------------tacttttaatggcaaaaaccacaataacttc-gcac---------------caacc------taaAatga-------------gttgaatcatg-------------tagtatt------tatttgt---------ttgtttgtttg---------tttatt--tttttga s panTro4.chr1_AACZ03149435_random 141009 360 + 173505 AAAAGTGttttcaaatgtgaaaaaatacatatgacataaaatttatca--ttaacca-cttaagatgtgcgcaggtcagtggcatcatgcacgttg---acagtg------ctgtgaagccatgaccaccatccagccacaga-accctttcatcttgcaaaattcaaaccctgcacccactgaacaacaac--cccatttctccttccctccagcccctggcaagcaccattctattttctcttgctatacatttgactattccaggtactttatat--------------------tacttttaatggcaaaaaccacaataacttt-gcac---------------caacc------taaAatga-------------gttgaatcatg-------------tagtatt------tatttgt---------ttgtttgtttg---------tttctt--tttttga i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chr2a 107081694 362 + 113028656 AAAAGTGtttttaaatatggaaaaatacatatgacataaaatttatca--ttaacca-cttaagatgtgctcaagtcagtggcatcgtgcacgtcg---acagtg------ctgtggagccgtcaccaccatccaaccacata-accctttcatcttgtaaaattcaaaccctgcacccactgaacaacagc--cccatttctccttccctccagcccctggcaagcaccattctattttctcttgctataaatttaactattccaggtactttatat--------------------tacttttaatggcaaaaaccacaataacttt-gcac---------------caacc------taaAatga-------------gttgaatcatg-------------tagtatt------tatttgt---------ttgtttgtttg---------tttgtttgtttttga i ponAbe2.chr2a C 0 C 0 s rheMac3.chr13 133332511 353 - 137160470 AGAAGTGtttttaactatgggaaaatacagataacataaaatttatca--ttaacca-cttaagatgtgcacaggtcagtggcgtcatgcacgttc---acagtg------ctatgcagccatcaccaccatccaaccacaga-acgctttcatcttgtaaaattcataccccgcacccaccgaaccacaacttcccatttctccttccctccagcccctggcaagcaccattctattttctctggctacaaattggactattccaggtcctttatat--------------------tacttttaatggcaaacaccgcaataacttt-gcac---------------caacc------taaAatga-------------gttgaatcatg-------------tagtatc-----------------------tgtttgtttg---------tttgt---tttttga i rheMac3.chr13 C 0 C 0 s macFas5.chr13 105412422 353 + 111193037 AGAAGTGtttttaactatgggaaaatacagataacataaaatttatca--ttaacca-cttaagatgtgcgcaggtcagtggcgtcatgcacgttc---acagtg------ctatgcagccatcaccaccatccaaccacaga-acgctttcatcttgtaaaattcataacccgcacccaccgaaccacaactccccatttctccttccctccagcccctggcaagcaccattctattttctctggctacaaattggactattccaggtcctttatat--------------------tacttttaatggcaaacaccgcaataacttt-gcac---------------caacc------taaAatga-------------gttgaatcatg-------------tagtatc-----------------------tgtttgtttg---------tttgt---tttttga i macFas5.chr13 C 0 C 0 s papAnu2.chr13 123122423 361 - 128036923 AGAAGTGCTTTTAACTATGGGAAAATacagataacataaaatttatca--ttaacCA-CTTAAGATGTGCGCAGGTCAGTGGCGTCATGCACGTTC---ACAGTG------ctatgcagccatcaccaccatccaacCACAGA-ACACTTTCATCTTGTAAAATTCATACCCCGCACCCACCGaacaacaactccccatttctccttccctccagcccctggcaagcaccattctattttctcttgCTACAAATTGGACTATTCCAGGTCctttatat--------------------tacttttaatggcaaacaCCGCAATaacttt-gcac---------------caacc------taaaatGA-------------GTTGAATCATG-------------Tagtatc------tgtttgt---------ttgtttgtttg---------tttgt---tttttga i papAnu2.chr13 C 0 C 0 s chlSab2.chr14 102061668 365 + 107702431 AGAAGTGtttttaactatgggaaaatacagataacataaaatttatca--ttaacca-cttaagatgtgcacaggtcagtggcgtcatgcacgttc---acagtg------ctgtgcagccatcaccaccacccagccacgga-acactttcatcttgtaaaattcaaaccctgcacccaccgagaaacaactccccatttctccttccctccagcccctggcaagcaccattctattttctcttgctacaaattggactattccaggtcctttatat--------------------tactcttaatggcaaacaccgcaataacttt-gcac---------------caacc------taaAatga-------------gttgaatcatg-------------tagtatc--tgtttgtttgt---------ttgtttgttcg---------tttgt---tttttga i chlSab2.chr14 C 0 C 0 s calJac3.chr14 5672562 357 - 108792865 AAAAGGGACttttactgtagaaaaatacatatatcacaaaatgtataa--ttaacca-cttaagacgtactcggtgcagtggtgtcctgcacgttgtgagcagtgtgactcttctgcagccatcgacaccagcccgccacag--accctttcatcttgcggaatggaaaccctgcacccaacgcacgaggactcccgctttctccttcgctccagcccccggcgagctccattccacggcctcttgttatacacttgactattccgggtcctttatgt--------------------TACTTCTAACGGCAAA-ACCACGATAACCTTGGCAG---------------CAGCC------TGAAATGA-------------GTTGAGTCAGG-------------TAATATC---------------------------CACGTG---------TTTTC---TTTTCAA i calJac3.chr14 I 250 C 0 s canFam3.chr17 60759265 444 - 64289059 AAAAA-------AAATCAgataaaatacacatcatgtacaatttaccatgttaatcatttttagatata--cagttcagtggcattaagtatattc---acactg------ttgtgcaaccatcacctccgtctgttctcagacatcttctcatcttgcaaaactgaaaccctatatgcattaaaccgtaatttcccatcccttc-ccccaccggctcctgataaccaccctcctactttgcgtctctgtgaatgggacaactctaggtaccttatataagtggcatcatagtacaggtccttttcgtaacta--acttctttcacttt-gtatgtagtcctcaaggtatagccctgtgttggaatgacctcattactgaggctgagtcatgggcccctggatgttcataccacattttgtttatcACCAGCTATTGTATGTTTAAACTTCTTTTtttt---tttttaa i canFam3.chr17 C 0 I 145 e nomLeu3.chr19 76401121 491 - 81552678 I a score=126662.000000 s hg38.chr1_KI270765v1_alt 32303 54 + 185285 ctggctcacttcgct-----tagcataatgtccATTGTTTATTATCAGCAATTACATTT s panTro4.chr1_AACZ03149435_random 141369 54 + 173505 ctggctcacttcact-----tagcataatgtccATTGTTTATTATCAGCAATTACATTT i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chr2a 107082056 54 + 113028656 ctggctcacttcact-----tggcataatgtcctTTGTTTATTATCAGCAATTACATTT i ponAbe2.chr2a C 0 C 0 s rheMac3.chr13 133332864 54 - 137160470 ctagctcacttcact-----tagcataatgtcctTTGTTTATTATCAGCAATTACATTT i rheMac3.chr13 C 0 C 0 s macFas5.chr13 105412775 54 + 111193037 ctagctcacttcact-----tagcataatgtcctTTGTTTATTATCAGCAATTACATTT i macFas5.chr13 C 0 C 0 s papAnu2.chr13 123122784 54 - 128036923 ctagCTCacttcact-----tagcaaaatgtcctTTGTTTATTATcagcaattacattt i papAnu2.chr13 C 0 C 0 s chlSab2.chr14 102062033 54 + 107702431 ctggctcacttcact-----tagcataatgttctTTGTTTATTATCAGCAATTACATTT i chlSab2.chr14 C 0 I 310 s calJac3.chr14 5672919 59 - 108792865 CGGGCTCACTTCACTTCACGTAGCATAATGTCCTTTGTTTATTATCATCAATTACATTT i calJac3.chr14 C 0 C 0 e canFam3.chr17 60759709 145 - 64289059 I e nomLeu3.chr19 76401121 491 - 81552678 I a score=7644.000000 s hg38.chr1_KI270765v1_alt 32357 3 + 185285 TAA s panTro4.chr1_AACZ03149435_random 141423 3 + 173505 TAA i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chr2a 107082110 3 + 113028656 TAA i ponAbe2.chr2a C 0 C 0 s rheMac3.chr13 133332918 3 - 137160470 TAA i rheMac3.chr13 C 0 C 0 s macFas5.chr13 105412829 3 + 111193037 TAA i macFas5.chr13 C 0 C 0 s papAnu2.chr13 123122838 3 - 128036923 taa i papAnu2.chr13 C 0 C 0 s chlSab2.chr14 102062397 3 + 107702431 TAA i chlSab2.chr14 I 310 C 0 s calJac3.chr14 5672978 3 - 108792865 TAA i calJac3.chr14 C 0 C 0 e canFam3.chr17 60759709 145 - 64289059 I e nomLeu3.chr19 76401121 491 - 81552678 I a score=1693535.000000 s hg38.chr1_KI270765v1_alt 32360 736 + 185285 AATTTCTAATCTT----------AGAAAAAGAGGCATACTGTTGTCAATGAGAGGTCAGCAGTTTCAGAATATATGAATAGAGGACAGAC---ACAATAGA---C--TT-AAAAATTATTACCATTC-GTTGTGCCAAGAAAACTTGCAAAAGTGTTCTTTCTCTGATGTAAGCATGCCAAAGGTCTGAATGTGTAC----ACATGTATGTTACTTCCCCCACTCCTCTTT-TCTTTCATTTTTATCTTTAC-TTTTTTCTAGGTAAGGACCGATTTTATTGTGGGGTGAAAA------------GTAACATAGAGCTGTACATTTTAAAGTGACTTGTATTCTCTATGTTAAGCTCAGTAAGTTGC-CTCTGCTGCAGGTTGTAGGTATCTGTGTTTAGCCCTGCATTCTATCTGCTCATTTCCCCTGTCTTTAGCACAGCTTGCCTCTCCCCATCCGC---ACAACCCTGCCTAATTCTACTTGCTTTCTTTGACTCACTCATGAAGATTAAG----------------TAGgtactaagtaaaatacaagtattttacttatatctaaatctcatgcctttttaacaatatcaatattacttttctcacttcagagataaggaaactgaggctcgaagatcttatgtaactgcctaTAGCCTAGCATCCATCTCAATGGGTGTCAAGAACTAGATCGAGTGTGTTTTGAGACAAATCCCAGAGGCTGCCCTGCACAGGATGTGGCAATCATCACTGCCTT-AGTCATCTGACTTTTGCTTTTGG-TTTGTGTG s panTro4.chr1_AACZ03149435_random 141426 736 + 173505 AATTTCTAATCTT----------AGAAAAAGAGGCATACTGTTGTCAATGAGAGGTCAGCAGTTTCAGAATATATGAATAGATGACAGAC---ACAATAGA---C--TT-AAAAATTATTACCATTC-GTTGTGCCAAGAAAACTTGCAAAAGTGTTCTTTCTCTGATGTAAGCATGCCAAAGGTCTGAATGTGTAC----ACATGTATGTTACTTCCCCCACTCCTCTTT-TCTTTCATTTTTATCTTTAC-TTTTTTCTAGGTAAGGACCGATTTTATTGTGGGGTGAAAA------------GTAACATAGAGCTGTACATCTTAAAGTGACTTGTATTCTCTATGTTAAGCTCAGTAAGTTGC-CTCTGCTGCAGGTTGTAAGTATCTGTGTTTAGCCCTGCATTCTATCTGCCCATTTCCCCTGTCTTTAGCACAGCTTGCCTCTCCCCATCCCC---ACAACCCTGCCTAATTCTACTTGCTTTCTTTGACTCACTCATGAAGATTAAG----------------TAGGTACTAAGTAAAATACAAGTATTTTACTTATATCTAAATCTCATGCCTTTTTAACAATATCAAtattacttttctcacttcagagataaggaaactgaggctcaaagatcttatgtaactgcctaTAGCCTAGCATCCATCTCAATGGGCGTCAAGAACTAGATCGAGTGTGTTTTGAGACAAATCCCAGAGGCTGCCCTGCACAGGATGTGGCAATCATCACTGCCTT-AGTCATCTGACttttgctttttg-tttgtgtg i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chr2a 107082113 728 + 113028656 AATTTCTAATCTT----------AGAAAAAGAGGCATACTGCTGTCAATGAGAGGTCAGCAGTTTCAGAATATATGAATAGATGACAGAC---ACAATAGA---C--TTAAAAAATTATTACCACTC----ATGCCAAGAAAACTTGCAAAAGTGTTCTTTCTCTGATGTAAACATGCCAAACGTCTGAATGTGTAC----GCATGTATGTTACTTCCCCCACCCCTCTTT-TCTTTCATTTTTATCTTTAC-TTTTTTCTAGGTAAGGACCGATTTTATTGTGGGGTGAAAA------------GTAACATAGAGCTGTACATTTTAAAGTGACTTGTATTCTCTATGTTAAGTTCAGTAAGTTGC-CTCTGCTGCAGGTTGTAGGTATCTGTGGTCAGCCCTGCATTCTATCTGCCCATTTCCCCTGT-TTTAGCACAGCTTGCCTCTCCCC-----C---ACAACCCTGCCTAATTCTACTTGCTTTCTTTGACTCACTCATGAAGATTAAG----------------TAGgtactaagtaaaatacaagtattttacttatatctaaatctcatgcctttttaacaatatcaatattacttttctcacttcagagataaggaaacggaggcttgaagatcttatgtaactGACTATAGCCTAGCATCCATCTCAATGGGCATCAATAACTAGATTGAGTGTGTTTTGAGACAACTCCCAGAGGCTGCCCTGCACAGGATGTGGCAATCATCACTGCCTT-AGTCATCTGACTTTTACTTTTTG-CTTGTGTG i ponAbe2.chr2a C 0 C 0 s rheMac3.chr13 133332921 720 - 137160470 AATTTCTAATCTT----------AGAAAAAGAGGCATACTGTTGTCAACGAGCGGTCAGCAGTTTCAGAATATGTGACTAGATGACAGAC---ACAATAGA---C--TTAAAAAAGTAATACCATTCCATTGTGCCAAGAAAACTTGCAAAAGTGTTC--TCTCTGTTGTAAGCATCCCAAATGTCTGA--------------ACGTATGTTACTTCCCCCACCACTCTTT-TCTTTCATTTTTATCTTTAC-CTTTTTCTAGGTAAGGGCTGATTTTCCTGTGAGGTGAGAG------------GTAACATGGAGCTGTACATTTTAAAGTGACTTGCGTTCTCTAGGTTCAGCTCAGGAAGTTGC-CTCTGCTGCAGGTTGTAGGTATCCGTGGTCAGCCCTTCATTCTATCTGCCCATTCCGCCTGTCTTTAGCACAGCTTGCCTCTCCCCTTCCTC---ACAACCCTGCCTAATTCTACTTGCTTTCTTTGACTCACTCATGAAGACTAAG----------------caggtactatgc------ccagtattttacttatatctaaatctcatgcctttttagcaatatcagtattcctgttctcacttcagagataaggaaactgaggctggaagatctcatgtaactgcctaTAGCCTAGCATCCATCTCAATGGGCATCAAGAACTAGATCAAGTATGTTTTGAGCCAAATCCCAGAGGCTGCCCTGCACAGGATGTGGCAGTCATCACTGCCTT-AGTCATCTGAtttttactttttg-tttgtgtg i rheMac3.chr13 C 0 C 0 s macFas5.chr13 105412832 720 + 111193037 AATTTCTAATCTT----------AGAAAAAGAGGCATACTGTTGTCAACGAGCGGTCAGCAGTTTCAGAATATGTGACTAGATGACAGAC---ACAATAGA---C--TTAAAAAAGTAATACCATTCCATTGTGCCAAGAAAACTTGCAAAAGTGTTC--TCTCTGTTGTAAGCATCCCAAATGTCTGA--------------ACGTATGTTACTTCCCCCACCACtcttt-tctttcatttttatctttac-ctttttctAGGTAAGGGCTGATTTTCCTGTGAGGTGAGAG------------GTAACATGGAGCTGTACATTTTAAAGTGACTTGCGTTCTCTAGGTTCAGCTCAGGAAGTTGC-CTCTGCTGCAGGTTGTAGGTATCCGTGGTCAGCCCTTCATTCTATCTGCCCATTCCGCCTGTCTTTAGCACAGCTTGCCTCTCCCCTTCCTC---ACAACCCTGCCTAATTCTACTTGCTTTCTTTGACTCACTCATGAAGACTAAG----------------caggtactatgc------ccagtattttacttatatctaaatctcatgcctttttagcaatatcagtattcctgttctcacttcagagataaggaaactgaggctggaagatctcatgtaactgcctatagcccagcaTCCATCTCAATGGGCATCAAGAACTAGATCAAGTGTGTTTTGAGCCAAATCCCAGAGGCTGCCCTGCACAGGATGTGGCAGTCATCACTGCCTT-AGTCATCTGAtttttactttttg-tttgtgtg i macFas5.chr13 C 0 C 0 s papAnu2.chr13 123122841 722 - 128036923 aatttctaatctt----------AGAAAAAGAGGCACACTGTTGTCAATGAGCGGTCAGCAGTTTCAGAATATATGAATAGATGACAGAC---ACAATAGG---C--TTAAAAAAGTAATACCATTCCATTGTGCCAAGAAAGCTTGCAAAAGTGTTCTTTCTCTGTTGTGAGCATCCCAAATGTCTGA--------------ACGTATGTTACTTCCCCCACcactcttt-tctttcatttttatctgtAC-CTTGTTCTAGGTAAGGGCTGATTTTCCTGTGAGGTGAGAG------------GTAACATGGAGCTGTACATTTTAAAGTGACTTGCGTTCTCTAGGTTCAGCTCAGGAAGTTGC-CTCTGTTGCAGGTTGTACGTATCCGTGGTCAGCCCTTCAGTCTCTCTGCCCATTCCGCCTGTCTTGAGCACAGCTtgcctctccccttcccc---acaacCCTGCCTAATTCTACTTGCTTTCTCTGACTCACTCATGAAGACTAAG----------------CAGGTACTATGC------CCAGTATTTTACTTATATCTAAATCTCATGCCTTTTTAGCAATATCAGTATTACTGTTCTCACTtcagagataaggaaactgaggctggaagagCTCATGTAACTGCCTATAGCCTAGCATCTATCTCAATGGGCATCAAGAACTAGATCAAGTGTGTTTTAAGCCAAATCCCAGAGGCTGCCCTGCACAGGATGTGGCAGTCATCACTGCCTT-AGTCatctgatttttactttttg-tttgtgtg i papAnu2.chr13 C 0 C 0 s chlSab2.chr14 102062400 721 + 107702431 AATTTCTAATCTT----------AGAAAAAGAGGCATACTGTTGCCAATGAGAGGTCAGCCGTTTCAGAATATATGAATAGATGACAGAC---ACAATAGA---C--TTAAAAAAGTAA-ACCATTCCTTTGTGCCAAGAAAACTTGCAAAAGTGTTCTTTCTCTGTTGTAAGCATCCCAAATGTCTGA--------------ACGTATGTTACTTCCCCCACCACtcttt-tctttcatttttatctttac-ctttttctAGGTAAGGGCTGATTTTCCTGTGAGGTGAGAG------------GTAACATGAGGCTGTACATTTTAAAGTGACTTGCGTTCTCTAGGTTCAGCTCAGGAAGTTGC-CTCTGCTGCAGGTTGTAGGTATCCGTGGTCAGCCCTTCATTCTATCTGCCCATTCCGCCTGTCTTTAGCACAGCTTGCCTCTCCCCTTCCCC---ACAACCCTGCCTAATTCTACTTGCTTTCTTTGACTCACTCATGAAGACTAAG----------------caggtactatgc------ccagtattttacttatatctaaatctcatgcctttttagcaatatcagtattactgttctcacttcagagataaggaaactgaggctggaagagctcatgtaactgcctatagcctagcatctatctcaatgggcatcaagaactagatcaagtgtgttttgagccaaatccCAGAGGCTGCCCTGCACAGGATGTGGCAGTCATCACTGCCTT-AGTCATCTGAtttttactttttg-tttgtgtg i chlSab2.chr14 C 0 C 0 s calJac3.chr14 5672981 733 - 108792865 CATTTCTAATTTT----------ATAAAAAGCAGCATGCTGCTGTCACTGAGAGGTCAGTGGTTTCAGAACACATAAATAGATGAGAGAG---ACCGCGGA---CAATTAAAAAACAATCACTATTCCGTTGTGCCAAGAAAACTTGCAGGAGTTTTCTTTTTCTGATGTGAGCATACCAAATGTCTGAATACCTACACATACGTGTATTTTGC-TCCCCCATCCCTCTTT-CCTTTCATTTTTATCTTTACTTTTTTTCTGGGTAAGGACCGATTTTACTGTGGGGTGAAAG------------GTAAGGTAGAGCTGTACATTTGAAAGGGACTCATATTCTCTGTGTTCAGCTCAGTGAGTCGC-CTCTGCTGCAGGTGGTAGGTGTCTG-GGGCAGTCCTGCATTCTGCCTGCCCATTC--CCTGTCTTTAACACAGCTTGCCTCTCCCCTTCC-C---ACAACCCTGCCTAATTCTACTTGCATTTTGTGA-TCATTCATGAAGattaagcatgt-acagctttgtcaggtactatgc------ccagtattttacttatatctaaatctcatgcctttttaacaatatcaata------ttcttacatcacagataaggaaattgagcctgaaagatcttatgtaactg------gcctaGCATTTGTCTCACTGGGCAACAAGAACTAGATTAAGTGTG-TTTGAGCCAAATCCCA-AGACTACCCTGCACAAGATATGGCAATTGTCACTGCCTC-AGTCATCTGACTGAC-ttttttg-tttgtttg i calJac3.chr14 C 0 C 0 s canFam3.chr17 60759854 769 - 64289059 AGCTTCTGTTCTTAGAGTACAAGAGAAAATGAAGCATAC-ATCATCAGTGAGA-GTGTGCAACACGAGCAGGTTTGTG-AGATGAGATACGTGACAATGGGATCT--TTGCAAAATAATTACTATTCCACTGTGCCAAGGCCAGTTTTACAAAT-TTTTTCCTATGATGTAAACATA-CAAATACGTAAACGTGTATGC--ACATACATGTTAC-TCCCATACTCCTTTTTGTATCTCCTTCTTGTCTTT-C-TCTATTCAGGACAAAGACAGATTTAGTT-TGGGGTGAGAGCATGGCACTTTTGTCACGTAGAGCTATACATTTTAAAGTGATTTATATTTTATATTTGAAATTCAAGAAGTTTCTCTCTGCTGTGGGTTATAGGTAATTGTGGCCAGTTCAGCATTCTCTACCCGTGCTACTCTTGTCCTCAACATAGCCTGCCTCTGCCTCTCCCCCTTCTCATCCTGCCTACTTCTGTAT---TTCTTTCACTAATTCGTGGATCCTAACCATGTAACATCCT---caggtacaatgc------taaataatttccttacatttaaatctaaagcctcttaa--aatatggatattcctgttcctatttcacagatgaagaaactgaggcacagagggtttatgtgactatctggtgccaaacatttatctgtgtcagggtcaagatctagaccaaatgtatttgaagccaaatcccagatgttgccctacacAGAGTAAAGCAGTTATCACTTTCTTAAGTCTTCTTTTATTTCCTACTGGATTTGCATG i canFam3.chr17 I 145 I 36 e nomLeu3.chr19 76401121 491 - 81552678 I a score=14860.000000 s hg38.chr1_KI270765v1_alt 33096 8 + 185285 CTTG--tttg s panTro4.chr1_AACZ03149435_random 142162 8 + 173505 cttg--tttg i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chr2a 107082841 10 + 113028656 CTTGtttttg i ponAbe2.chr2a C 0 C 0 s rheMac3.chr13 133333641 10 - 137160470 tttgtttttg i rheMac3.chr13 C 0 C 0 s macFas5.chr13 105413552 10 + 111193037 tttgtttttg i macFas5.chr13 C 0 C 0 s papAnu2.chr13 123123563 10 - 128036923 tttgtttttg i papAnu2.chr13 C 0 C 0 s chlSab2.chr14 102063121 10 + 107702431 tttgtttttg i chlSab2.chr14 C 0 C 0 s calJac3.chr14 5673714 10 - 108792865 tttgttgttg i calJac3.chr14 C 0 C 0 e canFam3.chr17 60760623 36 - 64289059 I e nomLeu3.chr19 76401121 491 - 81552678 I a score=417886.000000 s hg38.chr1_KI270765v1_alt 33104 158 + 185285 agacaagagtcttgctctgtcacccaggctggagtgcagtggcacaatcact-gcctcctgcaacccttgcctccttggttcaagtgattctcctccctcagcctcccaagtagctgggattataagtatatcccaccacacccagcta-------atttgtgtgt s panTro4.chr1_AACZ03149435_random 142170 158 + 173505 agacaagagtcttgctctgtcacccaggctggagtgcagtggcacaatcact-gcctcctgcaacccttgcctccttggttcaagtgattctcctccctcagcctcccaagtagctgggattataggtatatcccaccacacccagcta-------atttgtgtgt i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chr2a 107082851 158 + 113028656 agacaagagtcttgctctgtcacccaggctggagtgcagtggcacaatcacc-gtgtcctgcaacccttgccaccttggttcaag-------cctccctcagcctcccaagtagctgggattataggtatatcccaccatgcctttttgtgtgtgtgtgtgtgtgt i ponAbe2.chr2a C 0 C 0 s nomLeu3.chr19 76401612 159 - 81552678 AGACAAgagtcttgctctgtcacccaggctggagtgcagtggcacaatctttggcctcctgcaacccctgcctcatgggttcaagtgattctcctccctcagcctcctgagtagctgggattataggcgtatgccaccatgcccagcta-------attttttttt i nomLeu3.chr19 I 491 C 0 s rheMac3.chr13 133333651 157 - 137160470 agagaagagtcttgctctgtcacccaggctggagtgcagtggcacaatcaca-gcctcctgcaacccttgcctcct-ggttcaagtgattctcctccctcagcctcccaagtagctgggattataggcatatgccaccatgcccagcta-------atttttgtat i rheMac3.chr13 C 0 I 13 s macFas5.chr13 105413562 157 + 111193037 agagaagagtcttgctctgtcacccaggctggagtgcagtggcacaatcaca-gcctcctgcaacccttgcctcct-ggttcaagtgattctcctccctcagcctcccaagtagctgggattataggcatatgccaccatgcccagcta-------atttttgtat i macFas5.chr13 C 0 I 13 s papAnu2.chr13 123123573 158 - 128036923 agagaagagtcttgctctgtcacccaggctggagtgcagtggcacaatcaca-gcctcctgcaacctttgcctcctgggttcaagtgattctcctccctcagcctcccaagtagctgggattataggcatatgccaccacgcccagcta-------atttttgtat i papAnu2.chr13 C 0 C 0 s chlSab2.chr14 102063131 158 + 107702431 agagaagagtcttgctctgtcacccaggctggagtgcagtggcacaatcaca-gcctcctgcaacccttgcctcctgggttcaagtgattctcctccctcagcctcccaagtagctgggattataggcatatgccaccacgcccagcta-------atttttgtat i chlSab2.chr14 C 0 C 0 s calJac3.chr14 5673724 154 - 108792865 agac-agagtcttgctctgttgcccaggctggcatgcagtcacactttcctg-gctccctgcaaactctgcctcccaggttcaagcgattctccaccctcagcctccgaagtaggtta---cataggcacacaccaccatgcccggata-------atttttgtat i calJac3.chr14 C 0 C 0 e canFam3.chr17 60760623 36 - 64289059 I a score=-1133.000000 s hg38.chr1_KI270765v1_alt 33262 29 + 185285 gtgtgtgtgtgtgtgtgtgtgtgtgtgtg s panTro4.chr1_AACZ03149435_random 142328 18 + 173505 gtgtgtg-----------gtttttttttt i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chr2a 107083009 29 + 113028656 gtgtgtgtgtgtgtgtgtgtgtttctttt i ponAbe2.chr2a C 0 C 0 s nomLeu3.chr19 76401771 18 - 81552678 ttttttt-----------ttttttttttt i nomLeu3.chr19 C 0 C 0 s papAnu2.chr13 123123731 12 - 128036923 -----------------tttgtatttttt i papAnu2.chr13 C 0 I 2 s chlSab2.chr14 102063289 12 + 107702431 -----------------ttttattttttt i chlSab2.chr14 C 0 I 4 s calJac3.chr14 5673878 6 - 108792865 -----------------------tttttt i calJac3.chr14 C 0 C 0 e rheMac3.chr13 133333808 13 - 137160470 I e canFam3.chr17 60760623 36 - 64289059 I e macFas5.chr13 105413719 13 + 111193037 I a score=495792.000000 s hg38.chr1_KI270765v1_alt 33291 192 + 185285 tgtttagtagagatggggtttcaccatgttggccatgctggtctcgaactcctgacctcaagttatctgcccacctcggcctcctaaagtgttgggaatacaggcataagccaccatgcccggccCTGACTTTTGCTTTCTATTGGGCTTACCTGTGTATTCTCACACTCTCGGG-AGAACTCAACACTCCTG s panTro4.chr1_AACZ03149435_random 142346 192 + 173505 tttttagtagagatggggtttcaccatgttggccatgccggtctcgaactcctgacctcaagttatctgcccacctcggcctcctaaagtgttgggaatacaggcataagccaccatgcccggccCTGACTTTTGCTTTCTATTGGGCTTACCTGTGTATTCTCACACTCTCGGG-AGAACTCAACACTCCTG i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chr2a 107083038 192 + 113028656 tttttagtagagatggggtttcaccatgttggccatgctggtctcaaactcctgacctcaagttatctgcccacctcggcctcctaaagtgttgggattacaggcatgagccaccatgcctggccCTGACTTTTGCTTTCTATTGGGCTTACCTGTGTATTCTCCCACTCTTGGG-AGAACTCAACGCTCCTG i ponAbe2.chr2a C 0 C 0 s nomLeu3.chr19 76401789 193 - 81552678 tttttaataaaaatggggtttcaccatgttggccaggctggtctcaaactcctgacctcaagttatctgcccacctcaccctcctaaagtgttgggattacaggcatgagccaccatgcctggccCTGACTTTTGCTTTCTATTGGGCTTACCCGTGTATTCTCCCGCTCTCGGGAAAAACTCAATGCTCCTG i nomLeu3.chr19 C 0 C 0 s rheMac3.chr13 133333821 183 - 137160470 tttttagcagagacgggatttcgccat---------gctggtctcgaactcctgacctcaagttatctgcccacctcggcctcctaaagtgttggaattacaagcgtgaaccaccacgcccggccCTGACTTTTGCTTTCTATTGGGCTTACATATGTATTCTCCCACTTTCAGG-AGAACTCAATGCTCCTG i rheMac3.chr13 I 13 C 0 s macFas5.chr13 105413732 183 + 111193037 tttttagcagagacgggatttcaccat---------gctggtctcgaactcctgacctcaagttatctgcccacctcggcctcctaaagtgttggaattacaggcgtgaaccaccacgcccggccCTGACTTTTGCTTTCTATTGGGCTTACATATGTATTCTCCCACTTTCAGG-AGAACTCAATGCTCCTG i macFas5.chr13 I 13 C 0 s papAnu2.chr13 123123745 183 - 128036923 tttttagtagagacgggatttcaccat---------gctggtctcgaactcctgacctcaagttatctgcccacttcggcctcctaaaatgttggaattacaggcgtgagccaccacgcccggccctgactTTTGCTTTCTATTGGGCTTACATATGTATTCTCCCACTTTCAGG-AAAACTCAATGCTCCTG i papAnu2.chr13 I 2 C 0 s chlSab2.chr14 102063305 181 + 107702431 --tttagtagagacgggatttcaccat---------gctggtctcgaactcctgacctcaagttatctgcccacctcggcctcctaaagtgttggaattacaggcgtgagccaccacgctcggccCTGACTTTTGCTTTCTATTGGGCTTACATATGTATTCTCCCACTTACAGG-AGAACTCAATGCTTCCG i chlSab2.chr14 I 4 C 0 s calJac3.chr14 5673884 168 - 108792865 --tttagtagagatggggttttaatatgttggccagactggtctcaaacttctgacctgaagtgatccgcccgcct----------aagtgtgggggttacaggcatgaacca------------ctgACTTTTGCTTTCTATTGGGCTGCCATGTGCAGTCTGCCATCTTCAGA-AGAACTCAGCACTCCTG i calJac3.chr14 C 0 C 0 e canFam3.chr17 60760623 36 - 64289059 I a score=416746.000000 s hg38.chr1_KI270765v1_alt 33483 125 + 185285 AAGAACACAGCCCATGACTCCTCAT-TTCTGTCTCCTGGCAAAGGCTAGCACAATATTTTGTGCAAAGGTTTTGCTTTCTTAATGATAAGTGAATGAAATATGGAAAAGTTTTAACATAAAAATAT s panTro4.chr1_AACZ03149435_random 142538 125 + 173505 AAGAACACAGCCCATGACTCCTCAT-TTCTGTCCCCTGGCAAAGGCTAGCACAATATTTTGTGCAAAGGTTTTGCTTTCTTAATGATAAGTGAATGAAATATGGAAAAGTTTTAACATAAAAATAT i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chr2a 107083230 125 + 113028656 AAGAACACAGCCCATGACTCCTCAT-TTCTGTCTCCTGGCAAAGGCTAGCACAATATTTTGCGCAAAGGTTTTGCTTTCTTAATGATAAGTGAATGAAATATGGAAAAGTTTTAACATAAAAATAT i ponAbe2.chr2a C 0 C 0 s nomLeu3.chr19 76401982 125 - 81552678 AAAAACACAAACCATGACTCCTAAT-TTCTGTCTCCTGGCAAAGGCTAGCACAATATTTTGTGCAAAGGTTTTGCTTTCCTAATGATAAGTGAGTGAAATATGGAAAAGGTTTAACATAAAAATAT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr13 133334004 125 - 137160470 AAGAACACAGCCCATGACTCCTCAT-TTCTGTCTCCTGGCAAAGGTTAGCACAATATTTTGTGCAAAGGTTTTGCTTTCTTAATGATAAGTGAATGAAATATGGAAAAGGTTTAACATAAAAATAT i rheMac3.chr13 C 0 C 0 s macFas5.chr13 105413915 125 + 111193037 AAGAACACAGCCCATGACTCCTCAT-TTCTGTCTCCTGGCAAAGGTTAGCACAATATTTTGTGCAAAGGTTTTGCTTTCTTAATGATAAGTGAATGAAATATGGAAAAGGTTTAACATAAAAATAT i macFas5.chr13 C 0 C 0 s papAnu2.chr13 123123928 125 - 128036923 AAGAACACAGCCCATGACTCCTCAT-TTCTGTCTCCTGGCAAAGGTTAGCACAATATTTTGTGCAAAGGTTTTGCTTTCTTAATGATAAGTGAATGAAATATGGAAAAggtttaacataaaaatat i papAnu2.chr13 C 0 C 0 s chlSab2.chr14 102063486 125 + 107702431 AAGAACACAGCACATGACTCCTCAT-TTCTGTCTCCTGGCAAAGGCTAGCACAATATTTTGTGCAAAGGTTTTGCTTTCTTAATGATAAGTGAATGAAATATGGAAAAGGTTTAACATAAAAATAT i chlSab2.chr14 C 0 C 0 s calJac3.chr14 5674052 126 - 108792865 AGGAACACAGTCTGTGACTTCCAATCTTCTGTCACCTGGCAAAGGCTAGCACGATATTTTGTACAAAGGTTTTGCTTTCTTAATAATGAGTGAATAAAATATGGAAAAGGTTTAACATAAACATAT i calJac3.chr14 C 0 C 0 s canFam3.chr17 60760659 100 - 64289059 AAGAACATAACTCAGGGCTCTACAT-CT------------------------AGTATTTTGTGCACTGTATTTG-TAGTTTAATAAAAAGTTAATAAAATAGGGAAGATGTTTAAAATAAAAATAT i canFam3.chr17 I 36 N 0 a score=1931793.000000 s hg38.chr1_KI270765v1_alt 33608 654 + 185285 ATTCAAGTTAGCATTTTGCCTGAAATTTATACTTAATTACAACTAGGAAATTAAGTGTACATGATCAACATATATGTATATAT-------CATTTTCCTATTTGAGTACTGACAAGATGGAGGAAAGGCAAGGAAAAGCTGGAGAATTTGAAATATGCATGAGGTCATTTCCGTTCCAGAAATAGGAGACATAAAGTAGAGGTCGAGATCATTG-ACAGTGGGCTTTCTCGAGTCGGGTAGAGAAGGGGTCAGTCCTTCTAGAGCTGGATCCAACCGTGTGTGGCTCTCTACCCAAGGGTATCCACCTGCTCTCCATTCCCTCATCTGTCCACTGGGGTGCACACAGCACCTCTCA-----------TGGGAATTAAAAACGGTGGTGCCTGAGCAGCTTTCAAGGAGCCAGTGGCACTCGCTGCTCAGTGCACATGAGCTAGAGAGGAGTGGAGGCCTCAGCACAGGGCCTGGTACTAACTCGAGAGATATTTGTTGTGCCCTATACCCAGCAGATACTGAGTACATGCTCAATGTTGTCATTATTTTGATAGATATTTTCTTAAATCTGGATTATCATCCTTCAGTTTGGATAAGACAGACAATATTGATGGGTTGGGGTACTTTGTCAAAGAATGTAAAGAAAGATAATGTGAAGAAAGGCAATTT-TGTG s panTro4.chr1_AACZ03149435_random 142663 654 + 173505 ATTCAAGTTAGCATTTTGCCTGAAATTTATACTTAATTACATCTAGGAAATTAAGTGTACATGATCAACATATATGTATATAT-------CATTTTCCTATTTGAGTACTGACAAGATGGAGGAAAGGCAAGGAAAAGCTGGAGAATTTGAAATATGCACGAGGTCATTTCCGTTCCAGAAATAGGAGACATAAAGTAGAGGTCGAGATCATTG-ACAGTGGGCTTTCTCGAGTCGGGTAGAGAAGGGGTCAGTCCTTCTAGAGCTGGATCCAACCGTGTGTGGCTCTCTACCCAAGGGTATCCACCTGCTCTCCATTCCCTCATCTGTCCACTGGGGTGCACACAGCACCTCTCA-----------TGGGAATTAAAAACGGTGGTGCCTGAGCAGCTTTCAAGGAGCCAGTGGCACTCGCTGCTCAGTGCACATGAGCTAGAGAGGAGTGGAGGCCTCAGCACAGGGCCTGGTACTAACTCGAGAGATATTTGTTGTGCCCTATACCCAGCAGATACTGAGTACATGCTCAATGTTGTCATTATTTTGATAGATATTTTCTTAAATCTGGATTATAATCCTTCAGTTTGGATAAGACAGACAATATTGATGGGTTGGGGTACTTTGTCAAAGAATGTAAAGAAAGATAATGTGAAGAAAGGCAATTT-TGTG i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chr2a 107083355 653 + 113028656 ATTCAAGTTAACATTTTGCCTGGAATTTATACTCAATTACATCTAGGAAATTAAGTGTACATAATTAACATATATGTGGATAT-------CATTTTCCTATTTGAGTAGTGACAAGATGGAGGAAAGGCAAAGAAAAGCTGGAGAATTTGAAATATGCACGAGGTCATTTCTGATCCAGAAACAGGAGACATAAAGTAGAGATTGAGATCATTG-ACAGTGGGCTTTCTTGAGTCGGGTTGAGAAGGGGTCAGTCCTTCTAGAACTGGATCCACCCGTGTGTGTCTCTCTACCCAAGGGTATCCACCTGCTCTCCATTCCCTCATCTGTCCACTGGGGTGCACACAGCACCTCTCC-----------TGGGAATTAAAAACGGTGGTGCCTGAGCAGCTTTCAGGGAGCCAGTGGCACTCGCTGCTCAGTGCACATGAGCTAAAGAGGAGTGGAGGCCTCAGCACAGGGCCTGGTACTAACTCGAGAGATATTCGTTGTGCCCTATACCCAGCAGATACGGAGTACATGGTCAATGTT-TCATTATTTTGATAGATATTTTCTTAAATTTGGATTATAATCCTTCAATTTGGATAAGACAGACAATATTGATGGGTTGAGGTACTTTGTCAAAGAACGTAAAGAAAGATAATGTGAAGAAAGGCAATTT-TGTG i ponAbe2.chr2a C 0 C 0 s nomLeu3.chr19 76402107 654 - 81552678 ATTCAAGTTAGCATTTTGCCTGAAATTTATACTCAATTATGTCTGGGAAATTAGGTGTACATGATTAACATATATGTATGTAT-------CATTTTCCTATTTGAGTAGTGACAAGATGGAGGAAAGGCAAGGAAAAGCTGGAGAATTGGAAATATGCACGAGGTCATTTCTGATCCAGAAACAGGAGACATAAAGTAGAGTTTGAGATCATTG-ACAGTGGGCTTTCTGGAGTTGGGTAGAGAAGGGGTCAGTCCTTCTAGAGCTGGATCCACTGGTGTGTGGCTCTCTACCTGCGGGTATCCACCTGCTCTTCATTCCCTCATCTGTCCACTGGGGTGCACACAGCACCTCTCC-----------TGGGAATTAAAAACTGTGGTGCCTGAGCAGCTTTCAGGGAGCCAGTGGCACTCGCTGCTCAGTGCACGTGAGCTAAAGAAGAGTGGAGGCCTCAGCACAGGGCCTGGTACCAACTCGAGAGATATTTGTTGTGCCCTATACCCAGCAGATACTGAGTAAATAGTCAATGTTGTCATTATTTTGATAGATATTTTCTTAAATCTGGATTATAATCCTTCAATTTGGATAAGACAGACAATATTGATGGGTTGAGGTATTTTGTCAAAGAATGTAAAGAAAGATAATATGAAGAAAGGCAATTT-TTTT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr13 133334129 656 - 137160470 ATTCAAGTTAGCATTTTGCCTGAAATTTATACTCAATGACATCTAGGAAATTAGGTGTACATGATTAACATATATGTATATAT-------CGTTTTCCTATTTGAGTAGTGACAAGATGGAGGAAAGGCAAGGAAAAGCTGGAGAATTTGAAATATGCACGAGATCATTTCTGATCCAGAAACGGGAGACATAAAGTAGAGGTCGAGATCACTGAACAGTGGGCTTTCTCGAGTCGGGTAGAGAAGTGGTCAGTCCTTCTAGAGCTGGATCCACCAGTGTGTGGCTCTCTACCCGAGGGTATCCACCTGTGCTCCATTCCCTCGTCTGTCCACTGGGGTGCACACAGCACCTCTCC-----------TGCGAATTAAAAACCGTGGTGCCTGAGCAGCTTTCAGGGAGCCAGTGGCACTCGCTGCTCAGCGGACGTGAGCGAAAGGGGAGTGGAGGCCTCAGCACAGGGCCTGGTACTAACTCGAGAGATATTTGTTGTGCCCTATACCCAGCAGATACTGAGTAAATGGTCAATGTTGTCATTATTTTGACAGATATTTTTTTAAATCTGGATTATAATCCTTCAATTTGGATAAGACAGACAATATTGATGGGTTGAGGTACTTCGTCAAAGAATGTAAAGAAAGATAATGTGAAGAAGGACAATTTTTTTT i rheMac3.chr13 C 0 C 0 s macFas5.chr13 105414040 656 + 111193037 ATTCAAGTTAGCATTTTGCCTGAAATTTATACTCAATTACATCTAGGAAATTAGGTGTACATAATTAACATATATGTATATAT-------CGTTTTCCTATTTGAGTAGTGACAAGATGGAGGAAAGGCAAGGAAAAGCTGGAGAATTTGAAATATGCACGAGATCATTTCTGATCCAGAAACGGGAGACATAAAGTAGAGGTCGAGATCACTGAACAGTGGGCTTTCTCGAGTCGGGTAGAGAAGCGGTCAGTCCTTCTAGAGCTGGATCCACCAGTGTGTGGCTCTCTACCCGAGGGTATCCACCTGCGCTCCATGCCCTCGTCTGTCCACTGGGGTGCACACAGCACCTCTCC-----------TGCGAATTAAAAACCGTGGTGCCTGAGCAGCTTTCAGGGAGCCAGTGGCACTCGCTGCTCAGCGGACGTGAGCTAAAGGGGAGTGGAGGCCTCAGCACAGGGCCTGGTACTAACTCGAGAGATATTTGTTGTGCCCTATACCCAGCAGATACTGAGTAAATGGTCAATGTTGTCATTATTTTGACAGATATTTTTTTAAATCTGGATTATAATCCTTCAATTTGGATAAGACAGACAATATTGATGGGTTGAGGTACTTCGTCAAAGAATGTAAAGAAAGATAATGTGAAGAAGGACAATTTATTTT i macFas5.chr13 C 0 C 0 s papAnu2.chr13 123124053 656 - 128036923 attcaagttaGCATTTTGCCTGAAATTTATACTCAATTACATCTAGGAAATTAGGTGTACATgattaacatatatgtatatat-------cgtTTTCCTATTTGAGTAGTGACAAGATggaggaaaggcaaggaaaagcTGGAGAATTTGAAATATGCACGAGATCATTTCTGATCCAGAAACGGGAGACATAAAGTAGAGGTCGAGGTCACTGAACAGTGGGCTTTCTCGAGTCGGGTAGAGAAGCGGTCAGTCCTTCTAGAGCTGGATCCACCAGTGTGTGGCTCTCTACCCGAGGGTATCCACCTGTGCTCCATTCCCTCGTCTGTCCACTGGGGTGCACACAGCACCTCTCC-----------TGGGAATTAAAAACCGTGGTGCCTGAGCAGCTTTCAGGGAGCCAGTGGCACTCGCTGCTCAGCGGACGTGAGCTAAAGGGGAGTGGAGGcctcagcacagggcctggtacTAACTCGAGAGATATTTGTTGTGCCCTATACCCAGCAGATACTGAGTAAATGGTCAATGTTGTCATTATTTTgacagatatttttttaaatctggattATAGTCCTTCAATTTGGATAAGACAGACAATATTGATGGGTTGAGGTACTTCGTCAGAGAATGTAAAGAAAGATAATGTGaagaaagacaatttttttt i papAnu2.chr13 C 0 C 0 s chlSab2.chr14 102063611 655 + 107702431 ATTCAAGTTAGCATGTTGCCTGAAATTTATACTCAATTACATCTAGGAAATTAGGTGTACATGATTAACATATATGTATATAT-------CATTTTCCTATTTGAGTAGTGACAAGATGGAGGAAAGGCAAGGAAAAGCTGGAGAATTTGAAATATGCATGAGATCATTTCCGATCCAGAAACAGGAGACATAAAGTAGAGGTCGAGATCACTGAACAGTGGGCTTTCTCGAGTCGGGTAGAGAAGCGGTCAGTCCTTCTAGAGCTGGATCCACCAGTGTGTGGCTCTCTACCCGAGGGTATCCACCTGTGCTCCATTCCCTCATCTGTCCACTGGGGTGCACACAGAACCTCTCC-----------TGGGAATTAGAAACCGTGGTGCCTGAGCAGCTTTCAGGGAGCCAGTGGCACTCGCTGCTCAGCGTACGTGAGCTAAAGGGGAGTGGAGGCCTCAGCACAGGGCCTGGTACTAACTCGAGAGATATTTGTTGTGCCCTATACCCAGTAGATACTGAGTAAATGGTCAATGTTGTCATTATTTTGACAGATATTTTCTTAAATCTGGATTATAATCCTTCAATTTGGATAAGACAGACAATATTGATGGGTTGAGGTACTTCGTCAAAGAATGTAAGGAAAGATAATGTGAAGAAAGACTATTT-TTTT i chlSab2.chr14 C 0 C 0 s calJac3.chr14 5674178 667 - 108792865 ATTCAAGTTAGCATTTTGCCTGAAATTTATACTCAATTACATCTAGGAAATTATCTGTACATGATTAACatatatatatatatatatataATTTTATTTATTTTAGTAGTCACAAGATGGAGTAATGGCAAGGAAAACTTGGAGGATTTGAAATATGCATGAGGTCGTTTCTGAACCAGAAACAGTAGACATAAAGTAGAGGTTGAGATCACTG-ACAGTAGACTTTCTAGAGGCGGGTAAAGAAGAGATCAGCCTTTCCAGAGTGGGGTCCACCAGTGTGTGACTCTCTCCCTGAGGGCATCCACCTGACCTCCATTCCCTCCTCTGTCCACTGGGGTGCACACAGCACCTCTCCTGGGACTGCTGTGGGAATTCAAAACGGTCCTGTCTGAGCAGCTTTCAGGGCGCCAGTGCCACTCGCTCTTCAGTGCGCGTGAGCTAAAGGGGAGTGGAGGCCTCAGCACGGGACCTGCCGTTCACTC---AGATGTTCGTTGTACCATGTACCCAGCAGATACTGAATAAATGGTCAACGTTGTCATTATTTTGATAGATATTTTCTTAAATTTGGATTATAATCCTTCAATTTTGATAAGATAGACAACATTGATGGGCTGAGGTATTTTGTCCAAGAATATAAGGGAAGATAATGTGAGAAA--GCCATTT-TTTG i calJac3.chr14 C 0 I 722 a score=10192.000000 s hg38.chr1_KI270765v1_alt 34262 4 + 185285 ATTA s panTro4.chr1_AACZ03149435_random 143317 4 + 173505 ATTA i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chr2a 107084008 4 + 113028656 ATTA i ponAbe2.chr2a C 0 C 0 s nomLeu3.chr19 76402761 4 - 81552678 ATTA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr13 133334785 4 - 137160470 ATTA i rheMac3.chr13 C 0 C 0 s macFas5.chr13 105414696 4 + 111193037 ATTA i macFas5.chr13 C 0 C 0 s papAnu2.chr13 123124709 4 - 128036923 atta i papAnu2.chr13 C 0 C 0 s chlSab2.chr14 102064266 4 + 107702431 ATTA i chlSab2.chr14 C 0 C 0 e calJac3.chr14 5674845 722 - 108792865 I a score=848630.000000 s hg38.chr1_KI270765v1_alt 34266 293 + 185285 AAAAGGAAACTTTATTCTTAGATTTGTTAATAAGTGTCTCTTACTGAATTATTTGCTTATTAGGCAAAACAGTGATATCATTGAATCATTCTAAAATTCCTTCCCTTTTATGTCTTGAGGTTATGA--ACACA-TGTAAGGCACCTCACCTGGCATCTGACAAACTCAACGAGACAATGAATGAACCAGAATAAATAATCATCTATTTTTTTTTCCCCCTGAACATTTCTACAGTTGAGACAGTCTTAGAATTTCTCTCTTGCATGCCAGGATATTAGACTGTTGAAATTGAAttc s panTro4.chr1_AACZ03149435_random 143321 292 + 173505 AAAAGGAAGCTTTATTCTTAGATTTGTTAATAAGTGTCTCTTACTGAATTATTTGCTTATTAGGCAAAACAGTGATATCATTGAATCATTCTAAAATTCCTTCCCTTTTATGTCTTGAGGTTATGA--ACACA-TGTAAGGCACCTCACCTGGCATCTGACAAACTCAACGAGACAATGAATGAACCAGAATAAATAATCATCTA-TTTTTTTTCCCCCTGAACATTTCTACAGTTGAGACAGTCTTAGAATTTCTCTCTTGCATGCCAGGATATTAGACTGTTGAAATTGAAttc i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chr2a 107084012 291 + 113028656 AAAAGGAAGCTTTATTCTTAGATTTGTCAATAAGTGTCTCTTACTGAATTATTTGCTTATTAGGCAAAACAGTGATATCATTGAATCATTCTAAAATTCCTTCCCTTTTATGTCTTGAGGTTATGA--ATACA-TGTAAGGCACCTCACGTGGCATCTGACAAACTTAACAAGTCAATGAATGAACCAGAATAAATAATCATCTA--TTTTTTTTCCCCTGAACATCTCTACAGTTGAGACAGTCTTAGAATTTCTCTCCTGCATTCCAGGATATTAGACTGATGAAACTGAAttc i ponAbe2.chr2a C 0 C 0 s nomLeu3.chr19 76402765 294 - 81552678 AAAAGGAAGCTTTATTCTTAGATTTGTTAAAAAGTGTCTCTTACTGAATTATTTGCTTATTAGGCAAAACAGTGGTATCATTGAATCATTCTAAAATTCCTTCCCTTTTATGTTTTGAGGTTATGAACACACA-TGTAAGGCACCTGACATGGCATCTGACAAACTCTACGAGTCAATGAATGAACCAGAAGAAATAATCATCTA-TTTTTTTTTCCCCTGAACATCTCTACAGTTGAGACAGTCTTAGAATTTCTCTCTTCCATTCCAGGATATTAGACTGATGAAACTGAAttc i nomLeu3.chr19 C 0 C 0 s rheMac3.chr13 133334789 293 - 137160470 AAAAGGAAGCTTTATTCTTAGACTTGTTAATAAGTGTCTCTTACTGAATTATTTGCTTATTAGGCAAAGCAGCGACATCACTGAATCATTCTAAAATTCCTTCCCTTTTATGTCTTGAGGTTATGA--ACACATTGTAAGGCACCTGACGTGGCATCTGACAAGCTCTACAAGTCAAAGAATGAACCAGAAGAAATAATCATCTA-TTATTTTTTCCCCTGAACATCTCTACAGTCGAGACAGTCTTAGAATTTCTCTCTTCCATTCCAGGATATTAGACTGATGAAATTGAATTC i rheMac3.chr13 C 0 C 0 s macFas5.chr13 105414700 293 + 111193037 AAAAGGAAGCTTTATTCTTAGACTTGTTAATAAGTGTCTCTTACTGAATTATTTGCTTATTAGGCAAAGCAGCGACATCACTGAATCATTCTAAAATTCCTTCCCTTTTATGTCTTGAGGTTATGA--ACACATTGTAAGGCACCTGACGTGGCATCTGACAAGCTCTACAAGTCAAAGAATGAACCAGAAGAAATAATCATCTA-TTATTTTTTCCCCTGAACATCTCTACAGTCGAGACAGTCTTAGAATTTCTCTCTTCCATTCCAGGATATTAGACTGATGAAATTGAATTC i macFas5.chr13 C 0 C 0 s papAnu2.chr13 123124713 293 - 128036923 aaaaggaagCTTTATTCTTAGACTTGTTAATAAGTGTCTCTTACTGAATTATTTGCTTATTAGGCAAAGCAGCGACATCATTGAATCATTCTAAAATTCCTTCCCTTTTATGTCTTGAGGTTATGA--ACACATTGTAAGGCACCTGACATGGCATCTGACAAGCTCTACAAGTCAAAGAATGAACCAGAAGAAATaatcatcta-ttattttttcccctGAACATCTCTACAGTCGAGACAGTCTTAGAATTTCTCTCTTCCATTCCAGGATATTAGATTGATGAaattgaattc i papAnu2.chr13 C 0 C 0 s chlSab2.chr14 102064270 293 + 107702431 AAAAGGAAGCTTTATTCTTAGACTTGTTAATAAGTGTCTCTTACTGAATTATTTGCTTATTAGGCAAAACAGCGATATCATTGAATCATTCTAAAATTCCTTCCCTTTTATGTCTTGAGGTTATGA--ACACATTGTAAGGCACCTGACGTGGCATCTGACAAGCTCTACAAGTCAAAGAATGAACCAGAAGAAATAATCATCTA-TTATTATTTCCCCTGAACATCTCTACAGTCGAGACAGTCTTAGAATTTCTCTCTTCCATTCCAGGATATTAGACTGATGAAATTGAAttc i chlSab2.chr14 C 0 C 0 s calJac3.chr14 5675567 288 - 108792865 AAAAGGAAGCTTTATTCTGAGATTTGTCAATGATCGGTTATTATCAAACTATTTGCTTATTAGGCAACACAGTGATATCGTGGAATTATTCTAAAATTCCTTCCCTTTTATGTCTTGAGGTTATGA--ACACG-TGTAAGGTACCTGACGTGGCATCTGACAAACTCTACGAGTCAACAAATGAACCACAAGAAATAATCATCTA-TTTTTTTTTCC----AACATGTCTATAGTTGAGACAGTCTCAGAGCTTCTGTTTTCTATTTCAGGATATTACACTTAGGAAATTGAATTC i calJac3.chr14 I 722 C 0 a score=20964.000000 s hg38.chr1_KI270765v1_alt 34559 24 + 185285 tttttttttttttttttttttttt------- s panTro4.chr1_AACZ03149435_random 143613 13 + 173505 -----------ttttttttttttt------- i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chr2a 107084303 17 + 113028656 -------ttttttttttttttttt------- i ponAbe2.chr2a C 0 C 0 s nomLeu3.chr19 76403059 13 - 81552678 -----------tttttttttttgt------- i nomLeu3.chr19 C 0 I 5 s rheMac3.chr13 133335082 24 - 137160470 -------Cttttttttttttttttttttttt i rheMac3.chr13 C 0 M 209 s macFas5.chr13 105414993 17 + 111193037 -------Ctttttttttttttttt------- i macFas5.chr13 C 0 C 0 s papAnu2.chr13 123125006 19 - 128036923 -------ctttttttttttttttttt----- i papAnu2.chr13 C 0 C 0 s chlSab2.chr14 102064563 19 + 107702431 -------ttttttttttttttttttt----- i chlSab2.chr14 C 0 C 0 e calJac3.chr14 5675855 0 - 108792865 C a score=367852.000000 s hg38.chr1_KI270765v1_alt 34583 224 + 185285 gagacggagtctcgctctgtcccccaggctagagtgcagtggtgcgatctcggctcactgcaacctccgcctccaaggttcacgccattctcctgcctcagcttcccgagtaactgggactacaggcacccgccacgacacctaactaatttttttg-tattttttagtagagacggggtttcaccgtgttagccacgatggtcttgatctcctgacctcgtgat s panTro4.chr1_AACZ03149435_random 143626 220 + 173505 gagacggagtctcgctctgtcccccaggctagagtgcagtggtgcgatctcggctcactgcaacctccacctccaaggttcacgccattctcctgcctcagcttcccaagtaactgggactacaggcacccgccacgacac----ctaatttttttg-tattttttagtagagacggggtttcaccgtgttagccacgatggtcttgatctcctgacctcgtgat i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chr2a 107084320 224 + 113028656 gagacggagtctggctctgtcccccaggctggagtgcagtggcgcgatcttggctcactgcaacctccgcgtccaaagttcacgccattctcctgcctcagcttcccatgtatctgggactacaggcacctgccatgacacctaactaacttttttg-tattttgtagtagagacggggtttcaccgtgttagccacgatggtcttgatctcctgaccttgtgat i ponAbe2.chr2a C 0 C 0 s nomLeu3.chr19 76403077 224 - 81552678 gggacggagtctcactctgtcccccaggctggagtgcagtggcgtgatctcagctcactgcaacctccgcctcccaggttcacaccattctcctgcctcagcctcccgagtacctggcactacaggcgcccgccaccatgcctgcctaatgcttttg-tattttttagtagagacgggttttcaccgtgttagccaggatggtctcaatctcctgacctcatgat i nomLeu3.chr19 I 5 C 0 s macFas5.chr13 105415010 225 + 111193037 gagacgaagtctcactgtgtcccccaggctggagtgcagtggcaagacctcagctcattgcaacctctgcctcccagattcacgccactcctctgcctcagcctcccgagtagctgggactacaggcgcctgccaccacgcctgactaattttttttgtattttttagtagggatggggtttcaccatgttagccaggatggtctcgatctcctgacctcgtgat i macFas5.chr13 C 0 C 0 s papAnu2.chr13 123125025 225 - 128036923 gagacgaagtctcgctgtgtcccccaggctggagtgcagtggcgagacctcagctcattgcaacctctgcctcccagattcacgccactcctctgcctcagcctcccgagtagctgggactacaggcgcctgccaccacgcctgactaattttttttgtattttttattagggatggggtttcaccatgttagccaggatggtctcgatctcctgacctcatgat i papAnu2.chr13 C 0 C 0 s chlSab2.chr14 102064582 224 + 107702431 gagacgaagtctcactgtgtcccccaggctggagtgcagtggcgagacctcagctcattgcaacctctgcctcccagattcacgccactcctctgcctcagcctcccgagtagctgggactacaggtgcccgccaccacgcctgactaatttttttt-tattttttagtagggatggggtttcaccatgttagccacgatggtctcgatctcctgacctcgtgat i chlSab2.chr14 C 0 C 0 e calJac3.chr14 5675855 0 - 108792865 C e rheMac3.chr13 133335106 209 - 137160470 M a score=158053.000000 s hg38.chr1_KI270765v1_alt 34807 71 + 185285 ccgcctgcctcggcctcccaaagtgctggaattacaggtgtcaaccaccgcgcccggcTGAAATTGAATTT s panTro4.chr1_AACZ03149435_random 143846 71 + 173505 ccgcctgcctcggcctcccaaagtgctggaattacaggcgtcaaccaccgcgcccggcTGAAATTGAATTT i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chr2a 107084544 71 + 113028656 ctccctgccttggcctcccaaagtgctgagattacaggtgtcaaccaccgcacccggccAAAATTGAATTT i ponAbe2.chr2a C 0 C 0 s nomLeu3.chr19 76403301 71 - 81552678 ccgcccgcctcggcctcccaaagtgctgggattacaggcgtcaaccaccacgcctggccGAAATTGAATTT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr13 133335323 71 - 137160470 ccgcccgcctcagcctcccaaagtgctgggattacaggtgtgagccaccgcgccctgcAGAAATTGAATTC i rheMac3.chr13 M 209 C 0 s macFas5.chr13 105415235 71 + 111193037 ccgcccgcctcagcctcccaaagtgctgggattacaggtgtgagccaccccgccctgcAGAAATTGAATTC i macFas5.chr13 C 0 C 0 s papAnu2.chr13 123125250 71 - 128036923 ccgcccgcctcggcctcccaaagtgctgggattacaggtgtgagccaccgcgccctgcagAAATTGAATTC i papAnu2.chr13 C 0 C 0 s chlSab2.chr14 102064806 71 + 107702431 ccgcccccctcagcctcccaaagtgctgggattacaggcgtgagccaccgcgcccggccGAAACTGAATTC i chlSab2.chr14 C 0 C 0 e calJac3.chr14 5675855 0 - 108792865 C a score=530044.000000 s hg38.chr1_KI270765v1_alt 34878 196 + 185285 CTTTCTTTTCACCAACTCGAATTTCTTCT--TCTCATGTAAGGTCATCTTACATAAGTGAGACTCCTTTGTTCCCTTTCCCTTAATAACAAGCCTACACGGATGTGAAGGTGGTGAACGCACCTCTTCTCATCTCAAAACATCCACGTGCTCTTCCATTTTTTTCTAACAAAGAAGGGAGAGGAGGTGACATGAAAAC s panTro4.chr1_AACZ03149435_random 143917 179 + 173505 CTTCCTTTTCACCAACTCGAATTTCTTCT--TCTCATGTAAGGTCATCTTACATAAGTGAGACTCCTTTGTTCCCTTTCCCTTAATAAC-----------------AAGGGGGTGAACGCATCTCTTCTCATCTCAAAACATCCACGTGCTCTTCCATTTTTTTCTGACAAATAAGGGAGAGGAGGTGACATGAAAAC i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chr2a 107084615 196 + 113028656 CTTTCTTTTCGCCAACTCGAATTTCTTCT--TATCATGTAAGGTCATCTTACATAAGTGAGACTCCTTTGTTCCCTTTCCCTTAATAACAAGCCTACATGGAGGTGAAGGCGGTGAACGCATCTCTTCTCATCTCAAAACATCCACGTGCTCTTCCATTTTTTTCTGACAAAGAAGGGAGACGAGGTGACACGAAAAC i ponAbe2.chr2a C 0 C 0 s nomLeu3.chr19 76403372 194 - 81552678 ----CTTTTCACCAACTCGAATTTCTTCTTCTCTCGTGTAAGGTCATCTTACATGAGTGAGACTCCTTTGTTCCCTTTCCCTTAATAACAAGCCTACATGGAGGTGAAGGCAGTGAACGCATCTCTTCTCACCTCGAAACATCCACGTGCTCTTCCATTTTTTTCTGACAAAGAAGGGAGAGGAGGTGACATGAAAAC i nomLeu3.chr19 C 0 n 0 s rheMac3.chr13 133335394 185 - 137160470 CTTGCTTTTCACCAACTCGAATTTATTCTTCTCTCATGTAAGGCCATCTTACATAAATGAGACTCCTTTGTTCCCTTTCCCTTAATAACAGGCCTACAT---------GGAGGTGAACGCATCTGTTCTCATCTTGAAACATCCACGTGCTCTTTCATTTTTTTCTGAC----AAGGGAGAAGAGGTGACATGAAAAC i rheMac3.chr13 C 0 N 0 s macFas5.chr13 105415306 194 + 111193037 CTTGCTTTTCACCAACTCGAATTTATTCTTCTCTCATGTAAGGCCATCTTACATAAATGAGACTCCTTTGTTCCCTTTCCCTTAATAACAGGCCTACATGGAGGTGAAGGAGGTGAACGCATCTGTTCTCATCTTGAAACATCCACGTGCTCTTTCATTTTTTTCTGAC----AAGGGAGAAGAGGTGACATGAAAAC i macFas5.chr13 C 0 C 0 s papAnu2.chr13 123125321 194 - 128036923 CTTGCTTTTCACCAACTCGAATTTATTCTTCTCTCATGTAAGGCCATCTTACATAAATGAGACTCCTTTGTTCCCTTTCCCTTAATAACAGGCCTACATGGAGGTGAAGGAGGTGAACGCATCTGTTCTCATCTTGAAACATCCACgtgctctttcatttttttctgac----aagGGAGAAGAGGTGACATGAAAAC i papAnu2.chr13 C 0 C 0 s chlSab2.chr14 102064877 193 + 107702431 CTTGCTTTTCACCAACTCGAATTTATTCTTCCCTCATGTAAGGCCATCTTACATAAATGAGACT-CTTTGTTCCCTTTCCCTTAATAACAGGCCTACATGGAGGTGAAGGAGGTGAACGCATCCGTTCTCATCTCAAAACATCCACGTGCTCTTTCATTTTTTTCTGAC----GAGGGAGAAGAGGTGACATGAAAAC i chlSab2.chr14 C 0 N 0 s calJac3.chr14 5675855 198 - 108792865 CTTTCTTTTCACCAACTCAAATTTCTTCTTCTCTCACAGAAGGTCATCTTACATAAGTGAGACTCCTTTGTTTCCTTTCCCCTAATAATAAGCTTATCTGGAGGTGAAAGCAATGAACGTATCTCTCCTCATCTTGAAACATCCACTCACTCTTTCATTTTTTTCCAACAAAGAAGGGAGAGGAGGTGACATGAAAAC i calJac3.chr14 C 0 C 0 a score=5190.000000 s hg38.chr1_KI270765v1_alt 35074 4 + 185285 ACAC s panTro4.chr1_AACZ03149435_random 144096 4 + 173505 ACAC i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chr2a 107084811 4 + 113028656 GCAC i ponAbe2.chr2a C 0 N 0 s nomLeu3.chr12 56411341 4 - 109391073 ACAC i nomLeu3.chr12 I 2 C 0 s macFas5.chr13 105415500 4 + 111193037 CCAC i macFas5.chr13 C 0 C 0 s papAnu2.chr13 123125515 4 - 128036923 CCAC i papAnu2.chr13 C 0 C 0 s calJac3.chr14 5676053 4 - 108792865 CCAC i calJac3.chr14 C 0 C 0 a score=1555.000000 s hg38.chr1_KI270765v1_alt 35078 4 + 185285 CATG s panTro4.chr1_AACZ03149435_random 144100 4 + 173505 CATG i panTro4.chr1_AACZ03149435_random C 0 C 0 s nomLeu3.chr12 56411345 4 - 109391073 CACC i nomLeu3.chr12 C 0 C 0 s macFas5.chr13 105415504 4 + 111193037 TATA i macFas5.chr13 C 0 C 0 s papAnu2.chr13 123125519 4 - 128036923 CATA i papAnu2.chr13 C 0 C 0 s calJac3.chr14 5676057 4 - 108792865 TGTG i calJac3.chr14 C 0 N 0 a score=1000.000000 s hg38.chr1_KI270765v1_alt 35082 1 + 185285 G s panTro4.chr1_AACZ03149435_random 144104 1 + 173505 G i panTro4.chr1_AACZ03149435_random C 0 C 0 s nomLeu3.chr12 56411349 1 - 109391073 G i nomLeu3.chr12 C 0 C 0 s macFas5.chr13 105415508 1 + 111193037 G i macFas5.chr13 C 0 N 0 s papAnu2.chr13 123125523 1 - 128036923 G i papAnu2.chr13 C 0 N 0 a score=11329.000000 s hg38.chr1_KI270765v1_alt 35083 45 + 185285 ATATTGTTCAGCATTTGTAAAAGCTGAAAGTATCACTTGGTAGAC s panTro4.chr1_AACZ03149435_random 144105 45 + 173505 ATATTATTCAGCATTGGTAAAAGCTGAAAGTATCATTTGGTAGAC i panTro4.chr1_AACZ03149435_random C 0 C 0 s nomLeu3.chr12 56411350 42 - 109391073 ATATCGTTCAGCA---ATAAAAGTGAAAAGTACCACTTGGCATAC i nomLeu3.chr12 C 0 C 0 s macFas5.chr1 125091049 42 - 227556264 GGATTATACACCA---ATAAAAGCAAAAGGTAGACCTTCGCATAC i macFas5.chr1 N 0 C 0 a score=110081.000000 s hg38.chr1_KI270765v1_alt 35128 199 + 185285 AAACTGCTTTTTGCACTACAACCTccagaagaaagcgcgaacgcaattccccaccaccacaaatta--cagtccagtttccccacatgtg--gaagtaacaggagtcagtcagcacatactgagtacaatggagaaatcgcccccgagaaacaccaacttcatggccgtat--tttctcctgttacgtaagtatGAATGAACGCC s panTro4.chr1_AACZ03149435_random 144150 196 + 173505 AAACTGCTTTTTGCCCTACAACCTccagaaaaaagcgcaaacggaattccccaccatcacaaatta--cagtccagtttccccacatgtggagaagtcacagg----agtcaggacatacagagtacaacagagaaatc-tccccgaaaaacaccaacttcgtgactgtat--tttctcctggtatgtaaatatAAGTGAACGTA i panTro4.chr1_AACZ03149435_random C 0 C 0 s nomLeu3.chr12 56411392 200 - 109391073 AACCTGCTTTTTGCACTACAGCCTTcaagagaaagcgcgaacgcagtcccccgccaccaccaattacgcagtccagttt-cccacgtttggggaaatcgcagg----agtcagcacatacggagtgcaatgcataagtcttgccctggaaaaatcaacttcgtgatcacgctatttcccctgccaggtaagtatGAGTGCACACA i nomLeu3.chr12 C 0 C 0 s macFas5.chr1 125091091 200 - 227556264 AACCTGCTTTTAGCACTACAGAGAcccggggaaagcgcgaacgcagtccccgactaccacaaattatgcagtcgagttt-cccacatttggggaaatcgcagg----ggtcagcacatccggagtgcaatggataaacctcgccctgggaaaaccaccttcgtgatcatggtatctcccctgccaggtaagtatGAGTTCACCCA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98597519 200 - 220367699 AATCTGCTTTTTGTACCATAACATACAGGGGAAAGCGCGAACGCAGTCCCCCACTACCACAAATTATGCAGTCGAGTTT-CCCACATTTGGGGAAATCGCAGG----GGTCAGCACATCCGGAGTGCAATGGATAAGCCTCGCCCTGGGAAAACCACCTTCGTGATCATGGTATCTCCCCTGCCAGGTAAGTATGAGCTCACATT i papAnu2.chr1 N 0 C 0 a score=136009.000000 s hg38.chr1_KI270765v1_alt 35327 63 + 185285 CCTCCGCCCTGCCACAGCTCCATACGCCTCACCCCTTACACGCATGGTCACTTGGCCCGCGCA s panTro4.chr1_AACZ03149435_random 144346 63 + 173505 CCTCTGCCCTGCCACAGCTCCATACGCCTCACCCCTTACACGCACGGTCACTTGCCCCGCGCA i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11219720 63 + 72422247 CCTCCGCCCTGCCACAGCTCCATACGCCTCGCCCTTTACACGCACGGTCACTTCCCACTCGCA i ponAbe2.chrUn N 0 C 0 s nomLeu3.chr12 56411592 63 - 109391073 CCTCCGCCCTGCCACAGCTCCATACGCCTCACCCCTTACACGCACGATCACTTGCCCCGCGCA i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128122351 63 + 229590362 CCTCCGCCCTGCCACAGCCCCACACGCCTCACCCTTTACACACACGGTCACTTGCCCCGCGCA i rheMac3.chr1 N 0 I 11 s macFas5.chr1 125091291 63 - 227556264 CCTCCGCCCTGCCACAGCTCCATACGCCTCAACCTTTATACACACGGTCACTTGTCCCCCCCC i macFas5.chr1 C 0 I 13 s papAnu2.chr1 98597719 63 - 220367699 TCTCCATCATGCCACAGCTCCAGACGCTTCACCCTTTACACGCACGGTCACTTACCACCCGca i papAnu2.chr1 C 0 I 3 s chlSab2.chr20_KE148049v1_random 184398 63 + 1557941 CCTCCGCCCCGCCACAGCTCCATACGCCTCAACCTTTACACACACGGTCATTTGCCCCCCGCA i chlSab2.chr20_KE148049v1_random N 0 I 10 a score=36704.000000 s hg38.chr1_KI270765v1_alt 35390 34 + 185285 TTCCCCCA--------CCCCGCCC-------------CCATGCCGCCTCAAGTCT s panTro4.chr1_AACZ03149435_random 144409 34 + 173505 TTCCCCCA--------CCCCGCCC-------------CCATGCCGCCTCAAGTCC i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11219783 42 + 72422247 TCCCCCCACCGCCCCCCCCCACCC-------------CCATACCACCCCGAGCCC i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56411655 33 - 109391073 T-CTCCCA--------CCCCGCCC-------------CCATGCCGCCCCGAGTCC i nomLeu3.chr12 C 0 C 0 s macFas5.chr1 125091367 33 - 227556264 CGCCCCCG--------CCCCGCC--------------CCATGCCACTCCGAGTCC i macFas5.chr1 I 13 C 0 s papAnu2.chr1 98597785 47 - 220367699 cccccccc--------ccccacccagcACTGCCCCCACCATGCTACCCCGAGCCC i papAnu2.chr1 I 3 C 0 s chlSab2.chr20_KE148049v1_random 184471 33 + 1557941 CGCCCCCG--------CCCCGCC--------------CCATGCCACTCCGAGTCC i chlSab2.chr20_KE148049v1_random I 10 C 0 e rheMac3.chr1 128122414 11 + 229590362 I a score=359910.000000 s hg38.chr1_KI270765v1_alt 35424 164 + 185285 TCCTAGCCCTGACACACAGCTGGGACTATCACGTCCAACCGGAGGTCCTGGACTAGCTCCCACAGCACGAGAAATCTTTC---------------GTGGTGAAGCAGCAGCCCCTGAGCTGCCTCCTCTGCATAGGAATCGCCCTATCTGTGATGTCACCGACAGCGCCTTTCCC-GTCC s panTro4.chr1_AACZ03149435_random 144443 164 + 173505 TCCTAGCCCTGACACACAGCTGGGACTATCACGTCCAACCGGTGGTCCTGGACTAGCTCCCACAGCACGAGAAATCTTTC---------------GTGGCGAAGCAGCAGCCCCTGAGCTGCCTCATCTGCATAGGAATCGCCCTATCTGTGATGTCACCGACAGCGCCTTTCCC-GTCC i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11219825 165 + 72422247 TCCTAGCCCTGACACATAGCTGGGAATATCACGTCCAACCGGCGGTCCTGGACTTACTCCCACAGCAGAAGAAATCCTTC---------------GAGGCGAAGCAGCAGCCCCTGAGCTGCCTCATCTACACAGGAATCGCCCTATCCGTGATGTCACCGACAGCGCCTTTCCCAGTCC i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56411688 164 - 109391073 TCCTAGCCCTGACACACAGCTGGGACTATCACGTCCAACCGGCGGTCCTGGACTAGCTCCCACAGCACGAGAAATCCTTC---------------GTGGCAAAGCAGCAGCCCCTGAGCTGCCTCATCTACACAGGAATCGCCCTATCCGTGATGTCACCGACAGCGCCTTTCCC-GTCC i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128122425 179 + 229590362 TCCTAGCCCTGACACACAGCTGGGACTCTCAGGTCCGACCAGCGGTCCTGGACTCGCTCCCACAGCAAGGAAACTCCTTCGTGGCCTAGCAGCCGGTGGCGAAGCGGCAGCCCCTGCGCTGCCTCATCTACATAGAAGTCGCTCTCTCCGTGATGTCACCAACAGTGTCTTTCCC-GTCC i rheMac3.chr1 I 11 I 452 s macFas5.chr1 125091400 164 - 227556264 TCCTAGCCCTGACACACAGATGGGACTCTCACGTCCAACCGGCGGTCCTGGACTTGCTCCCAAAGCAGGAGACATCCTTC---------------TTGGCGAAGTAGCGGCCCCTGAGCTGCCTCATCTACATAGGAATTGCCCTATCCGTGATGTCACCGACAGCGCCCTTCCC-GGTC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98597832 164 - 220367699 TCCTGTCCCTGACACACAGCCAGGACGATCACGTCCAACCGGCGGTCCTGGACTTGCTCCCACAGCACAAGAAATCCTCT---------------GTGGCGAAGCAGCGGCCCCTGCGCTGCCTCATCTACATAGGAATCGCCCTATCCGTGATGTCACCGACAACGCCTTTCCC-GGTC i papAnu2.chr1 C 0 I 1 s chlSab2.chr20_KE148049v1_random 184504 164 + 1557941 TCCTAGCCCTGACACACAGCTGGGACTCTCACGTCCAACCGGGGGTCCTGGACTTGCTCCCAAAGCAGGAGAAATCCTTC---------------TTGGCGAAGCAGCGGCCCCTGAGCTGCCTCATCTACATAGGAATTGCCCTATCCGTGATGTCACCGACAGCGCCCTTCCC-GGTC i chlSab2.chr20_KE148049v1_random C 0 C 0 a score=210932.000000 s hg38.chr1_KI270765v1_alt 35588 131 + 185285 CCGTCTGCTCTTCCGCCCCACCCTCTGCCA-CTCGGCCGACCAACCAGCTGTGGGAGCGGGCGGAGGAAGTGACACCTGACTCTACCTCCTTTCCCTCCCATCCCCGTCCCTGGTCTCTCCCAAAGAAGTAg s panTro4.chr1_AACZ03149435_random 144607 131 + 173505 CCGTCTGCTCTTCCGCCCCACCCTCTGCCA-CTCAGCCGACCAACCAGCTGCGGGAGCGGGCGGAGGAAGTGACACCTGACTCTGCCTCCTCTCCCTCCCATCCCCGTCCCTGGTCTCTCCCAAAGAAGTAG i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11219990 132 + 72422247 CGCTCTGCTCTTCCGCTCCACCCTCTGCCACCTCAGCCGATCAACCCGCTGCCGGAGCCGGCGAAGGAAGTGACGCCTGCCTCTCCCTCTTTTCCCTCCCATCCCCGCCCTTGGTCTCTCCCAAAGAAGTAg i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56411852 131 - 109391073 GCGTCTGCTCTTCCGCCCCATCCTCTGCCA-CTCAGCCAACCAACCAGCTGCGGGAGCCGGCGGAGGAAGTGACTCCTGACTCTACCTCCTTTCCCTCCCATCCCCGTCCCTGGTCTCTCCCAAAGAAGTAg i nomLeu3.chr12 C 0 C 0 s macFas5.chr1 125091564 131 - 227556264 CCGTCTGCTCTTCCGCCCCACCCTCCGCCA-CTCAGCCGACCAACCCGCTGCGGGAGCCCGCGGAGGAAGTGACGCCTGCCTCTATCTCCTTCCCCTCCCTTCCCCGCCGCTGCTCTCTCCCAAAGAAGTAg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98597997 124 - 220367699 CCGTCTGCTCTTCCG-------CTCCGCCA-CTCAGCCGACCAACCTGCTGCGGGAGCCTGCGGAGGAAGTGACACTTGCCTCtatctcctttccctcccttccccgccCCTGGTCTCTCCCAAAGAAGTAG i papAnu2.chr1 I 1 C 0 s chlSab2.chr20_KE148049v1_random 184668 131 + 1557941 CCGTCTGCTCTTCCGCCCCACCCTCCGCCA-CTCAGCCGACCAAGCGGCTGCGGGAGCCGGCCGAGGAAGTGACGCTTGCCTCTATCTCATtcccctcccttccccgcccctgctctctccCGAAGAAGTAg i chlSab2.chr20_KE148049v1_random C 0 C 0 e rheMac3.chr1 128122604 452 + 229590362 I a score=1623265.000000 s hg38.chr1_KI270765v1_alt 35719 762 + 185285 gttc-ttagcctgtgatgcaaaggacc----cctttggcggccagctggagcctgtgcgcttttcttcaaataatggcttttaaagctcagactagaaagtttaggattacaaagaaaaacggttcttttcacatacggttatcCTTGTGATGTAGCATTTCGCTTGACATTTGGAAGTCGTTCAATATCAGAGAGAAACCGTATCTATGAAACTAGAGAGGCTGCTCAGATGACTGCAAACCAGCCATCCTT-ACTTGTTTTATCACTAGGAGTATTATAAAGACGGTCGTCCAGTTTCATGAATCTTGTAGGG-TTTTTTTCAGATACAGCAATGTACAAAAATGTGCTGCCCCAGCAGAGCACACTGGACATTCAGGCATGGTGCTGGAG----TTTGTCATCTCTT-CACTGCCTTCTCTAGACCTTAGCGCTTACCTCATGTTAACACTTTATATGCTGCGAAGACAGAAACACAGTCATCCAAATTTGGC---AAAAATATTTGGGAGAAGTTTTATTTCAGGTGTTTAACTGATTACTTTTAATATGTAGACTACAACACCAAACTCTGAGAATACTCCACAGACTTATTAATGGTTTCCACCCCCGTCTCTGCAAATCTATCAGGCAAGTTTTTCCTGCCCTTTACTTTCATATAAGCTGAGTC--ACAGTCTGTAGTGGGTTTTGGGG---GGAGtgttactgcccaacaggtacaccctgcctgctgcctagacagagccaatttttcgacacaggggaattgcaataaaga s panTro4.chr1_AACZ03149435_random 144738 763 + 173505 GTTCTTTAGCCTGTGATACAAAggacc----cctttggcggccagttggagcctgtgcgcttttcttcaaataatggcttttaaagctcagactagaaagtttaggattacaaagaaaaacggttcttttcacatacggttatcCTTGTGATGTAGCATTTCGCTTGACATTTGGAAGTCGTTCAATATCAGAGAGAAACCGTATGTATGAAACTAGAGAGGCTGCTCAGATGACTGCAAACCAGCCATCCTT-ACTTGTTTTATCACTAGGAGTATTATAAAGACGGTCGTCCAGTTTCTTGAATCTTGTAGGG-TTTTTTTCAGATACAGCAATGTACAAAAATGTGCTGCCCCAGCAGAGCACACTGGACATTCAGGCATGGTGCTGGAG----TTTGTCGTCTCTT-CACTGCCTTCTCTAGACCTTAGCGCTTACCTCATGTTAACACTTTATATGCTGCGAAGACAGAAACACAGTCATCCAAATTTGGC---AAAAATATTTGGGAGAAATTTTATTTCAGGTGTTTAACTGATTACTTTTAATATGTAGACTACAACACCAAACTCTGAGAATACTCCACAGACTTATTAATGGTTTCCACCCCCGTCTCTGCAAATCTATCAGGCAAGTTTTTCCTGCCCTTTACTTTCATATAAGCTGAGTC--ACAGTCTGTAGTGGGTTTTGGGG---GGAGtgttactgcccaacaggtacaccctgcctgctgcctagacagagccaatttttcgacacaggggaattgcaataaaga i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11220122 763 + 72422247 gttc-ttagactgtgatgccaaggacc----cctttgacggccagctggagcctgtgcgctcttcttcaaataatggcttttaatgcgcaaactagaaagtttaggattacaaagaaaaccggttcttttcacatagggttatcCTTGTGATGTAGCATTCCGCTTGACA-TTGGAAGTCGTTCGATATCAGAGAGAAACTGTATCTATGAAACTAGAGAGGCTGCTCAGATGACTGCAAACCAGCCATCCTT-ACTTCTTTTATCACTGGGAGTGTTATAAAGACGGTTGTCCAGTTTCATGAATCTTGCAGGG--TTTTTTCAAATACAGCAATGTACAAAAATGTGCTGCCCCAGCAGAGCACACTGGACACTCAGGCATGGTGCTGGAG----TTTGTCATCTCTTCCACTGCCTTCTCTAGACCTTAGCGCTTACCTCATGTTAACACTTTATATGCTGCAAAGACAGAAACAAAGTCATCCAAATTTGGC---AAAAATATTTGGGGGAAATTTTATTTCAGGTGTTTAACTGATTACTTTTAATATGTAGGCTACAAAGCCAAACTCCGACAATACTCCACAGATTTATTAATGGTTTCCACCCCCGTCTCTGCAAATCTATCAGGCAagtttttcctgccttttactttcatataaactgagtcatacagtgtgtagtgggttttgggg---ggagtgttactgcccaacaggttcaccttgcctgctgcctagacagagccaatttttcaatacaggggaattgcaataaaga i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56411983 753 - 109391073 gttc-ttagcctgtaatgccaaggacc----cctttggtggccagctggagcctgttcgcttttcttcaaataatggcttttaaagctcagactagaaagtttaggattacaaagaaaacaggttcttttcacatacggttatcCTTGTGATGCAGCATTCCGCTTGACATTTGGAAGTTGTTCAATATCAGAGAGAAACCGTATCTATGAAACTAGAGAGGCTGCTCAGATGACTGCAAACCAGCCATCCTT-------------ACTAGGAGTGTTATAAAGACGGTCGTCCAGTTTCATGAATCTTGTAGGGTTTTTTTTCAAATACAGCAATGTACAAAAATGTGCTGCCCCAGCAGAGCACACTGGACACTCAGGCATGGTGCTGGAG----TTTGTCATCTCTT-CACTGCCTTCTCTAGACCTTAGCGCTTACCTCATGTTAACACTTTATATGCTGCGAAGACAGAAACAAAGTCATCCAAATTTGGC---AAAAATATTTGGGGGAAACTTTATTTCAGGTGTTTAACTGATTACTTTTAATATGTAGACTACAACACCAAACTCTGAGGATACTCCACAGACTCATTAATGGTTTCCACCCCCGTCTCTGCAAATCTATGAGGCAagtttttcctgccctttactttcatataagcttagtcatacagtgtgtagtgggttttgagg---ggagtgttactgcccaacaggttcaccttgcctgctgcctagacagagccaatttttcgacacaagagaattgcaacaaaga i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128123056 732 + 229590362 gttc-ttagcctgtgttgccgaggacc----tctttggcagacagctggagcctgtccaccgttcttcaaacaatggcttgtaatgtgcagactaaaacatgtaggattacacaagaaacTGGTTCTCTTCACAT-CG-TTATCCTTGTGAT-TAGCATTCTACTTGAAA-TTGGAAGCCGTTCAATATCAGAGGGAAACCATATCTATGAAACTAGAGAGGCTGCTCAGATGACTGCAAACCAGCCATCCTT-ACTTGTTTTACCACTAGCACTGTTATAAAGAGGGTGGTCCAATTTCATGAATCTTGTAGGG--TGTTTTCAAATACAGCAATGTAC--AGATATGCTG--CCAGCAGAGCACACTGGACACTCAGGCATGGTGCTGGAG----TGTGTCATCTCTTCCACAGCCTTCTCTAGACCTTAGCACTTACCTCGTGTTAGCGCTTTATGCTCTGCAAAGACAGAAACAAAGTGGTCCAAATTTGGAGGGAAAAAAATTGAGGGGAAATTTTATTTGAGGTGCTTGACTGATTACTTTCAATCTGTAGAATACAACCCCAAACTTGGACAATACTCCATAGACTC--------------------------CAAATCTATCagaccagtttttcctgtcctttactttcatataaatcgaatcataaagtgtgtagtgggttttggg----ggagtataactgcccaatgggttcacgttgcctgctgcctagacagaaccaatttattaagacaggggaattgcaataaaga i rheMac3.chr1 I 452 I 96 s macFas5.chr1 125091695 767 - 227556264 gttc-ttagcctgtgatgccaaggacc----tctttgactgccagctggagcctgtgctctcttcttcaaataatggcttttaatgcgcaaactagaaagtttaggattacacagaaaacgggttcttttcacatacgcttatcCTTGTGATGTAGCTTTCTGCTTGAAA-TTAGAAGTCGTTCAATATCAGAGAGAAACCGTATCTGTGAAACTAGACAGGCTGCTCAGATGACTGCAAACCAGCCATCCTT-ACTTGTTTTATCACTAGGAGTGTTATAAAGACGGTTGTCCAGTTTCATGAATCTTGTAGGT--TTTTTTCAAATACAGCAATGTACAAAAATGTGCTGCCCCAGCAGAGCACACTGG--ACTCAGGCATGGTGCTGGAGTCGTTTTGTCATCTCTTCCACTGCCTTCTCTAGACCTTAGCGCTTACCTCATGTTAACACTTTATATTCTGCAAAGACAGAAACAAAGTCATCCAAATTTGGC---AAACATATTTGGGGGAAATTTTATTTCAGGTGTTTAACTGATTACTTTTAATATGTAGACTACAACACCAAACTCTGACAATACTGCACAGACTTATTAATGGTTTCCA-CCCCATCTCTGCAAATCTATCAGGCAagtttttcctgccctttactttcatataaactgagtcatacagtgtgtagtgggcttggggggcaggagtgttactgcccaacaggtacaccttgcctgctgcctagacagagccaattttttgacacaggggaattgcaataaaga i macFas5.chr1 C 0 I 30 s papAnu2.chr1 98598121 749 - 220367699 GTTC-TTAGCCTGTGATGCCAAGGACA----CCTTTGGCAGCCAGCTGGAGCCTGTGCTCTCTTCTTCAAATAATGGCTTTTAATGCGCCAACTAGAAAGTTTAGGATTACAGAGAAAACCGGTTCTTTTCACATACGGTTATCCTTG-----TAGCTTTCTGCTTGAAA-TTAGAAGTCGTTCAATATCAGAAAGAAACTGTATCCATGAAACTAGAGAGGCTGCTCAGATGACTGCAAACCAGCCATCCTCGACTTGTTTTATCACTAGGAGTGTTATAAAGACGATTGTCCAGTTTCATGAATCTTGTAGGt--ttttttCAAATACAGCAATGTACAAAAATGTGCTGCCCCAGCAGAGCACACTGG--ACTCAGGCATGGTGCTGGAGTCCTTTTATCATCTCTTCCACTGCCTTCTCTAGACCTTAGCGCTTACCTCATGTTAACACTTAATATTCTGCAAAGACAGGAACAAAGTCATCCAAACTTGGC---AAAAATATTTGGGGGCAATTTTATTTCAGGTGTTTAACTGATT------AATATGAGGACTACAACACCAAACTCTGACAATACTGCACAGACTT---AATGATCTCCA-CCCCGTCTCTGCAAATCTATCAGGCAAGTTTTTCCTGCCCTTTACTTTCCTATAAACTGAGTCATACA--GTGTAGTGGGTTTTGGGG---GGAGTGTTACTGCCCAACAGGTACACCTTGCCTGCTGCTTAGATAGAACCAACTTTTCGacacaggggaattgcaatgaaGA i papAnu2.chr1 C 0 C 0 s chlSab2.chr20_KE148049v1_random 184799 770 + 1557941 gttc-ttagcctgtgatgccaaggacccgggtctttgactgccagctggaggctgtgcgctcttcttcaaataatggctcttaatgcgcaaactagaaagtttaggattacacagaaaaccggttcttttcacatacggttatcCTTGTGATGTAGCTTTCTGCTTGAAA-TTAGAAGTCGTTCAATATCAGAGAGAAACTGTATCTGTGAAACTAGACAGGCTGCTCAGATGACTGCAAACCAGCCATCCTT-ACTTGTTTTATCACTAGGAGTGTTACAAAGACGGTTGTCCAGTTTCATGAATCTTGTAGGG--TTTTTTCAAATACAGTAATGTACAAAAATGTGCTGCCCCAGCAGAGCACACTGG--ACTCAGGCATGGTGCTGGAGTCGTTTTGTCATCTCTTCCACTGCCTTCTCTAGACCTTAGTGCTTACCTCATGTTAACACT--ATATTCTGCAAAGACAGAAATAAAGTCATCCAAATTTGGC---AAACATACTTGGGGGAAATTTTATTTCAGGTGTTTAACTGATTACTTTTAATATGTAGACTACAGCACCAAACTCTGACAATACTCCACAGACTTATTAATGGTTTCCACCCCCGTCTCTGCAAATCTATCAGGCAagtttttcctgccctttactttcatataaactgagtcatacagtgtgtagtggatttggggggcaggagtgttactgcccaacaggtacaccttgactgctgcctagacagagccaattttttgacacaggggaattgcagtaaaga i chlSab2.chr20_KE148049v1_random C 0 C 0 a score=2795.000000 s hg38.chr1_KI270765v1_alt 36481 3 + 185285 gct s panTro4.chr1_AACZ03149435_random 145501 3 + 173505 gtt i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11220885 3 + 72422247 gct i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56412736 3 - 109391073 gct i nomLeu3.chr12 C 0 C 0 s macFas5.chr1 125092492 3 - 227556264 acc i macFas5.chr1 I 30 C 0 s papAnu2.chr1 98598870 3 - 220367699 GCC i papAnu2.chr1 C 0 C 0 s chlSab2.chr20_KE148049v1_random 185569 3 + 1557941 gtt i chlSab2.chr20_KE148049v1_random C 0 I 91 e rheMac3.chr1 128123788 96 + 229590362 I a score=8918.000000 s hg38.chr1_KI270765v1_alt 36484 9 + 185285 gcactcttt s panTro4.chr1_AACZ03149435_random 145504 9 + 173505 gcactcttt i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11220888 9 + 72422247 gcacttttt i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56412739 9 - 109391073 gcactcttt i nomLeu3.chr12 C 0 C 0 s macFas5.chr1 125092495 9 - 227556264 agactttta i macFas5.chr1 C 0 I 52 s papAnu2.chr1 98598873 9 - 220367699 GCACTCTTT i papAnu2.chr1 C 0 C 0 e chlSab2.chr20_KE148049v1_random 185572 91 + 1557941 I e rheMac3.chr1 128123788 96 + 229590362 I a score=254065.000000 s hg38.chr1_KI270765v1_alt 36493 118 + 185285 atttggtgattgggggccggtgaattgagagttctgcttggccaggtcggagatgaaatcacagggagctgaagctgtggtcttgtgctgggtcagttcctgcttgggggccacaaga s panTro4.chr1_AACZ03149435_random 145513 118 + 173505 atttggtgattgggggccggtgaattgagagttctgcttggccaggtcagagatgaaatcacagggagctgaagctgtggtcttgtgctgggtcagttcctgcttgggggccacaaga i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11220897 118 + 72422247 atttggtggttgggggccagtgagttgagagttctgattggtcaggtcagagatgaaatcacagggagctgaagctgtcctcttctgctgagtcagttcctgcgtgggggcgacaaga i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56412748 118 - 109391073 atttggtggttgggggccggtgagttgggagttctgattggccaggtcggagatgaaatcacagggagctgaagctgtcgtcttgtgctgggtcagttcctgcgtgggggccacaaga i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128123884 116 + 229590362 atttggtgggtgggggccagtgagttggga-gtctgattggtcaggtcggagatgaactcagagggagctaaagc-atcttcttgagctgggtcagttcctgggtgggggccacaagg i rheMac3.chr1 I 96 C 0 s macFas5.chr1 125092556 118 - 227556264 atttggtggatgggggccagtgagttgggaggtctgattgatcaggttggagatgaaatcacagggagctgaagctgttgtcttgtactgggtcagttcctgcgtgggggccacaaga i macFas5.chr1 I 52 C 0 s papAnu2.chr1 98598882 117 - 220367699 ATTTGGTGGATGGGGGCTGGTGAGTTGGGAGTTCTGATTGGACAGGTCGGAGATGAAATCCCA-GGAgctgaagctgtcctcttgtgctgGGTCAGTTCCTGCGTGGGGGCCACAAGA i papAnu2.chr1 C 0 I 1449 s chlSab2.chr20_KE148049v1_random 185663 118 + 1557941 atttggtggatgggggccagtgagtttggagttctgattgatcaggttggagatgaaatcacagggagctaaagctgttgtcttgtactgggtcagttcctgcgtgggggccacaaga i chlSab2.chr20_KE148049v1_random I 91 C 0 a score=1140064.000000 s hg38.chr1_KI270765v1_alt 36611 706 + 185285 ccagctgagccaggttatcagtctagctggtgccagctgatccactgagtgcagggtcggcaaaatatctcaagcactgatcttaggttttccaataacgatgtgatctccaggaacaatttggggaggtttagaatcttgcagcc-agaggctacatgactcctaaaccataatttctaatctcgtggctaatttgttagtccggcaaaggcagtctagtccccaggcaggaaaggggtttgctttgggaaagggatattatcatctttgtttcacagctaaaccataaactaatttcctcccaaagttatttcggcctgtgcccagcaatcaacaaggacagcttgtacgttagaagcaagatggaatcagttagatcagatctctttcactgtggtaattgtcccagttgtaatttttgcaaaggcggttgcaGAAGCAGAGGCATAGgtctgacttctttcactcagtcctatgtctatgaatttttcatgttattcatatggttatttggttctacgtgtattcctttgtaggaatatacattaacttatgtatttcttctactgttgttgaacatGTTGACCTAAAAGAAGGAGGCtgaagcacaaaatataatttagagtttacttgagtcaacatgaagacaactgcctggaagactcaca-ccaaggaagcttggatctgagctccctttggcctttgt s panTro4.chr1_AACZ03149435_random 145631 706 + 173505 ccagctgagccaggttatcagtctagctggtgccagctgatccactgagtgcagggtcggcaaaatatctcaagcactgatcttaggttttccaataacgatgtgatctccaggaacaatttggggaggtttagaatcttgcagcc-agaggctacatgactcctaaaccataatttctaatctcgtggctaatttgttagtccggcaaaggcagtctagtccccaggcaggaagggggtttgcttcgggaaagggatattatcatctttgtttcacagctaaaccataaactaatttcctcccaaagttatttcggcctgtgcccagcaatcaacaaggacagcttgtacgttagaaacaagatggaatcagttagatcagatctctttcactgtggtaattgtcccagttgtaatttttgcaaaggcggttgcaGAAGCAGAGGCATAGgtctgacttctttcactcagtcctatgtctatgaatttttcatgttattcatatggttatttggttctacgtgtattcctttgtaggaatatacattaacttatgtatttattctactgttgttgaacatGTTGACCTAAAAGAAGGAGGCtgaagcacaaaatacaatttagagtttacttgagtcaacatgaagacaactgcctggaagactcaca-ccaaggaagcttggatctgagctccctttggcctttgt i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11221015 707 + 72422247 ccagctgagccaggttatcagtctagctggtgtcagctgatccactgagtgcagggtcggcaaaatatctcaagcactgatcttaggttttccaataatgatgtgatctccaggaacaatttggggaggtttagaatcttgcagcc-agaggctacatgactcctaaaccataatttctaaactcatggctaatttgttagtcctgcaaaggcagtctagtccccaggcaggaagggggtttgctttgggaaaggggtattatcatctttgtttcacagctaaaccataaactaatttcctcccaaagttattttggcctgtgcccagcaatcaacaaggacagcttggatgttagaaacaagatggaatcagttaggtcagatctctttcactgtgataattgtcccagttttaatttttgcaaaggcggtttcagaagcagaggcataggtttgacttctttcactcagtcttatgtctatgaatttttcatgttattcatatggttatttgtttctatgtgtattcctttgtaggaatatacattaacttatttatttattctactgttgttgaacatGTTGACCTAAAAGAAAGAGGCtgaagcacaaaatataatctagagtttacttgagccaacatgaagacagctgcctggaaggctcacacccaaggaaccttggatctgagctccctttggcctttgt i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56412866 706 - 109391073 ccagatgagccaggttatcagtctagctggtgccagctgatccactgagtgcagggtcggcaaaatatctcgagcactgatcttaggttttccaataacgatgtgatctccaggaacaatttggggaggtttagaatcttgcagcc-agaggctacatgagtcctaaaccatagtttctaatctcgtggctaatttgttagtcctgcaaaggcagtctagtccccagacaggaagggggtttgctttgggaaggggatattatcatctttgtttcacaggtaaaccataaactaatttcctcccaaagttattttggcctgtgcccggcaatcaacaaggacagcttggacgttagaaacaagatggaatcagttaggtccgatctctttcaccgtgataattgtcccagctgtgacttttgcaaaggcggtttcagaagcagaggcataggtctgacttctttcactcagtcttatgtctatgaatttttcatgttattcgtatggttatttgtttctacgtgtattcttttgtaggaatatgcattaacttatttatttattctactgttgttgaacatGTCGACCTAAAAAGAGGATGCtgaagcacaaaatataatttagagtttacttgagccaacatgaagacagctgcctggaagattcaca-ccaaggaaccttggatctgagctccctttggcctttgt i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128124000 693 + 229590362 tcagatgagctggtttatccatctgggtggtgccagctgatgcattgagtgcggggtctgcaaaatatctcacacactgatcttatgttttacaatagtgatttgatccccaggaacaatttggggaggtttagaatcttgtaacctggaggctgcatgactcctaaaccatcatttctaatatcgtggctaatttgttagtcctgcaaaggcagtctagtccccaggcaggaagggggtttgttttgggaaagggctgttatcatctttgtttcacagctaaaccataaactaagttcctctcaaagttattttggcctgtgcccaggtatgaacaaggacagcttggacgt-----------tggaatcagttaggtcagatctctttcgctgtgatgattgtcctagttataatttttgcaaagtcggtctcaggagcagaggcataggtttgacttctttcactcagtcttacatctatgaattgttcatgttattcatgtggttatttgtttctgtgtgtattcctttgtatgaatataggccaacttatttattc----tactgttgctgaacatgttgacctaaaagaaagatgctgaagcacaaaatataatttagagtttacttgagccaacgtgaaggcagctgcccggaagcctcacaccgaaaaaaccttggatctgagctccctttggcctctgt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 125092674 672 - 227556264 ccagatgagccaggttatcagtctagctgatgccacctgatccattgagtgaaaggtgggcaaaatacgtcaagcactcatcctaggttttccaataatgatgtgatctccaggaacaatttggagaggtttagaatcttgcagcc-agaggctgcatgactcctaaactataatttttaatctcgtggctaatttgttagtcct--aaaggcagtctagtcctcaggcaggaagg-----------------gggatactatc-------tctcacagctaaaccctaaactaagttcctcccaaagttatttcagcctgtgcccagggatgaacaaggacagcctggacattagaaacaagatggaatcagttagatcagatctctttcaccatgaaaattgtcccagttataatttttgcaaaggcagtttcagaag--------taggtttgacttctttcactcagtcttatgtctatgaatttttcacctcattcatatggttatttgtttctgtgtgtatt-atttgtatgaatatacattaacttatttattcatttgactgttgttgaatatGTTGACCTAAAAGAAAGAGGCtgaagcacaaaatacaatttagagtttacttgagccaacgtgaagacagctgcctggaagactcacacccaaagaaccttggatctgagctccctttggcctttgt i macFas5.chr1 C 0 C 0 s chlSab2.chr20_KE148049v1_random 185781 674 + 1557941 ccagatgagccaggttatcagtcgagctggtgccacctgatccattgagtgaaaggtgggcaaaatacgtcaagcactcatcctgggttttccaataatgatgtgatctccaggaacaatttggagaggtttagaatcttgcagcc-agaggctgcatgactcctaaactataatttttaatctcgtggctaatttgttagtcctgcaaaggcaatctagtccccaggcaggaagg-----------------gggatactatc-------tctcacagctaaaccctaaactaagttcctcccaaagttatttcagcctgtgcccagggatgaacaaggacagcttggacattagaaacaagatggaatcagttagatcagatctctttcaccatgaaaattgtctcagttataatttttgcaaaggcagtttcagaag--------taggtttgacttctttcactcagtcttatgtctatgaatttttcaccttattcatatgattatttgtttctgtgtgtatt-atttgtatgaatatacattaacttacttattcatttgactgttattgaacatATTGACCTAAAAGAAAGAGGCtgaagcacaaaatataatttagagtttacctgagccaacatgaagacagctgcctggaagactcacacccaaggaaccttggatctgagctccctttggcctttgt i chlSab2.chr20_KE148049v1_random C 0 C 0 e papAnu2.chr1 98598999 1449 - 220367699 I a score=21285.000000 s hg38.chr1_KI270765v1_alt 37317 15 + 185285 cacaagcaggttttt s panTro4.chr1_AACZ03149435_random 146337 15 + 173505 cacaagcaggttttt i panTro4.chr1_AACZ03149435_random C 0 C 0 s nomLeu3.chr12 56413572 15 - 109391073 cacaagcaggttttt i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128124693 15 + 229590362 cacaagcaggttttt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 125093346 15 - 227556264 cacaagcaggttttt i macFas5.chr1 C 0 C 0 s chlSab2.chr20_KE148049v1_random 186455 15 + 1557941 cacaagcaggttttt i chlSab2.chr20_KE148049v1_random C 0 I 766 e ponAbe2.chrUn 11221722 0 + 72422247 C e papAnu2.chr1 98598999 1449 - 220367699 I a score=546.000000 s hg38.chr1_KI270765v1_alt 37332 1 + 185285 a s panTro4.chr1_AACZ03149435_random 146352 1 + 173505 a i panTro4.chr1_AACZ03149435_random C 0 C 0 s nomLeu3.chr12 56413587 1 - 109391073 a i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128124708 1 + 229590362 a i rheMac3.chr1 C 0 I 72787 e chlSab2.chr20_KE148049v1_random 186470 766 + 1557941 I e ponAbe2.chrUn 11221722 0 + 72422247 C e papAnu2.chr1 98598999 1449 - 220367699 I e macFas5.chr1 125093361 0 - 227556264 C a score=145822.000000 s hg38.chr1_KI270765v1_alt 37333 303 + 185285 ttttttatttt--------ttatttatttatttattttgagacggagtctcactctgtcgcccaggctggagtgcagtggcgcgaactct-----------gctccgcctcccgggttctcgccattctcctgcctcagcctccctagtagctgggattacaggcacccgccaccacgcccagctaa-ttttttt-gtatttttttaatagagacggggtttcaccgtgttagccaggatggtctggatcttctgacctcatgatccgcctgcctcggcctcccaaagtgctgggattacaggcgtgagccaccgcaccctgcc s panTro4.chr1_AACZ03149435_random 146353 304 + 173505 ttttttatttt--------ttatttatttatttattttgagacggagtctcactctgtcgcccaggctggagtgcagtggcgcgaactct-----------gctccgcctcccgggttctcgccattctcctgcctcagcctccctagtagctgggattacaggcacccgccaccacgcccagctaatttttttt-gtatttttttaatagagacggggtttcaccgtgttagccaggatggtctcgatctcctgacctcatgatccgcctgcctcggcctcccaaagtgctgagattacaggcgtgagccaccgcaccctgcc i panTro4.chr1_AACZ03149435_random C 0 C 0 s nomLeu3.chr12 56413588 316 - 109391073 ttttttattat--------ttatttatttatttattttgcgatggagtctcgctctgtcgcccaggctggagtgcagtggcgcgaactctgctcactgcaagctccgcctccctggttctcgccattctcctgcctcagcctccctagtagctgggattacaggcacccgccaccatgcccagctaattttttttggtatttttttagtagagacggggtttcaccgtgttagccaggatggtctcgatctcctgacctcatgatctgcctgactcggcctcccaaagtgctgggattacaggcgtgagccaccacaccctgcc i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128197496 323 + 229590362 ttttttatttgtattattattattattatcattattttgagacggagtctcgctctgtcgctcaggctggagtgcaatggagctaactctgctcactggaagctccgcctcccgggttctcgccattctcctgcctcagcctctcgagtatctgggactacaggcgcccgccaccacgcccggctaatttttttttgtattttttc-gtataaactgggtttcaccgtgttagccacgatggtctcgatctcctgacctcatgatccgcccgcctcggcctcccaaagtgctgagattacaggcgtgagccaccatgcccggcc i rheMac3.chr1 I 72787 C 0 e chlSab2.chr20_KE148049v1_random 186470 766 + 1557941 I e ponAbe2.chrUn 11221722 0 + 72422247 C e papAnu2.chr1 98598999 1449 - 220367699 I e macFas5.chr1 125093361 0 - 227556264 C a score=12470.000000 s hg38.chr1_KI270765v1_alt 37636 15 + 185285 cacaagcaggttttt s panTro4.chr1_AACZ03149435_random 146657 15 + 173505 cacaagcaggttttt i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11221722 15 + 72422247 cacaaggaggtgttt i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56413904 15 - 109391073 cacaagcaggttttt i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128197819 15 + 229590362 Cacaagcaggttttt i rheMac3.chr1 C 0 C 0 e chlSab2.chr20_KE148049v1_random 186470 766 + 1557941 I e papAnu2.chr1 98598999 1449 - 220367699 I e macFas5.chr1 125093361 0 - 227556264 C a score=110716.000000 s hg38.chr1_KI270765v1_alt 37651 90 + 185285 aaagttcaaaagcagggacagacagtgggctgat----aggtgcctatcaggaattctcattggtttacagaaataacattgcttggtgattgg s panTro4.chr1_AACZ03149435_random 146672 90 + 173505 aaagttcaaaagcagggacagacagtgggctgat----aggtgcctatcaggaattctcattggtttacagaaataacattgcttggtgattgg i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11221737 94 + 72422247 aaaggtcaaaagcagggacacacagtgggctgatagaaaggtgcctgtcaggagttctcattggtttacagaaataacattgattgatgattgg i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56413919 90 - 109391073 aaaggtcaaaagcagggacagacagtgggctgat----aggtgcctgtcaggaattctcattggtttacagaaataacattgcttggtgattgg i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128197834 94 + 229590362 aaaagtcaaaagcggggacagacagtgggctgatagaaagctgcctgtcaggaattctcattggtttacagaaatatcattgattggtgattgg i rheMac3.chr1 C 0 T 73093 s macFas5.chr1 125093361 93 - 227556264 aaaggtcaaaagcggggacagacagtgggctgatagaaag-tgcctgtcaggaattctcattggtttacagaaataacactgattggtgattgg i macFas5.chr1 C 0 C 0 e chlSab2.chr20_KE148049v1_random 186470 766 + 1557941 I e papAnu2.chr1 98598999 1449 - 220367699 I a score=33034.000000 s hg38.chr1_KI270765v1_alt 37741 39 + 185285 ctatatgttgttaagttatagggtatgggggtataggga s panTro4.chr1_AACZ03149435_random 146762 39 + 173505 ctatatgttgttaagttatagggtatgggggtataggga i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11221831 39 + 72422247 ctatatgttgttaagttatagggtatgggggtatagtga i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56414009 39 - 109391073 ctatatgttgttaagttatagggtatgggagtataggga i nomLeu3.chr12 C 0 C 0 s macFas5.chr1 125093454 38 - 227556264 ctatatgttgttaagttatagggtatggg-gtatagtga i macFas5.chr1 C 0 C 0 e chlSab2.chr20_KE148049v1_random 186470 766 + 1557941 I e rheMac3.chr1 128197928 73093 + 229590362 T e papAnu2.chr1 98598999 1449 - 220367699 I a score=182754.000000 s hg38.chr1_KI270765v1_alt 37780 168 + 185285 ttggtgtggcattattaggttaatttacagctacttaaggcaatagcaagcagtttcaacggatgaatacatagctcagcgcagctcaaaaggaaggag-cggaaagtggttgctgtctcgatttaacgtctctctgggcctgatcatttgaaagggctcacattcctc s panTro4.chr1_AACZ03149435_random 146801 164 + 173505 ttggtgtggcattattaggttaatttacagctacttgaggcaatagcaagcagtttcaacagatgaatacatagctcagtgcagctcaaaaggaaggag-tggaaa----ttgctgtctcaatttaacgtctctctgggcctgatcatttgaaagggctcacattcctc i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11221870 167 + 72422247 ttggtgtagcattattaggttaatttacagctacttgaggtgat-gcaagcagtttctacagatgaatacatagctcagcgcagctcaaaaggaaggag-cggaaagtggttgctgtctcaatttaacctctctctgggcctgatcatttgaaagtgctcaccttcctc i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56414048 168 - 109391073 ttggtgtggcattattaggttaatctacagctacttgaggcaacagcaagcagtttcaacagatgaatacgtagctcagcgcagctcaaaaggaaggag-cggaaagtggttgctgtctcgatttaacgtctctctgggcccaatcatttgaaagggctcacattcctc i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128124835 153 + 229590362 ttggtgtggcattattagattaatttacagctacctggagtgatagcaagcagttccaacagatgaatac----------gtagctcaaaaggaaggaatcagaaagtgattgctgtcttgatttaatgtctct------ctgatcatgtgaagtggctcacattcctg i rheMac3.chr1 T 73093 C 0 s macFas5.chr1 125093492 168 - 227556264 ttggtgtggcattattaggataatttacagctacttgaggtgataacaagcagtttcaacagatgagtacacagctcagtgcagctcaaaaggaaggaa-caggaaggggttgacatctcggtttaacatctctctgggcctgatcatttgaaagggctcacattcctc i macFas5.chr1 C 0 C 0 e chlSab2.chr20_KE148049v1_random 186470 766 + 1557941 I e papAnu2.chr1 98598999 1449 - 220367699 I a score=84043.000000 s hg38.chr1_KI270765v1_alt 37948 63 + 185285 aga--taaaaagtttttt--tAAT-CTTTCTTCTTGAAAGCATCGATGATCAAAAGCTAAGTCAAGGG s panTro4.chr1_AACZ03149435_random 146965 63 + 173505 aga--taaaaagtttttt--tAAT-CTTTCTTCTTGAAAGCATCGATGATCAAAAGCTAAGTCAAGGG i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11222037 63 + 72422247 aga--taaaacatttttt--aaAGACTTTCTTCTTGAAAGCATTGATGATCAAAAGCTCAGTCAA-GG i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56414216 62 - 109391073 aga--taaaaAATTGTTT--AAAT-CTTTCTTCTTGGAAGCATCAATGATCAAAAGCTCAGTCAA-GG i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128124988 64 + 229590362 aga--taaaaattcttttAAAAAT-CTTTCTTCTTGAAAGCACTGATGATCAAAAGCTCAGGCAA-GG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 125093660 65 - 227556264 agatttaaaaagtttttt-AAAAT-CTTTCTTTTTGAAAGCAttgatgatcagaagctcagtcaa-gg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98600448 62 - 220367699 aaa--aaaaaaaattttt--aaat-ctttcttcttgAAAGCACTGATTGTCAAAAGCTCAGTCAA-GG i papAnu2.chr1 I 1449 C 0 e chlSab2.chr20_KE148049v1_random 186470 766 + 1557941 I a score=87116.000000 s hg38.chr1_KI270765v1_alt 38011 38 + 185285 Tgtccttctttgccagaaaggctcattcccggatagtc s panTro4.chr1_AACZ03149435_random 147028 38 + 173505 Tgtccctctttgccagaaaggctcattcccggatagtc i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11222100 38 + 72422247 TGTCTGTCTTTGCCAGAAAGGCTTATTCCCGGATAGTC i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56414278 38 - 109391073 TGTCcctgttttccagaaaggctcattcccagatagtc i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128125052 38 + 229590362 TGTCCCTCTTTGCCAGGAAGGCTCATTCCCAGATGGTC i rheMac3.chr1 C 0 I 2128 s macFas5.chr1 125093725 38 - 227556264 tgtccctctttgccagaaaggctcattcccagatagtc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98600510 38 - 220367699 TGTCCCTTTTTGCCAGAAAGGCTCATTCCTGGATAGGC i papAnu2.chr1 C 0 C 0 s calJac3.chr21 50412338 38 - 50472720 TGTCCCTCTTTGCCAGAAAGGCTCATTCCTGGATAGTC i calJac3.chr21 N 0 C 0 e chlSab2.chr20_KE148049v1_random 186470 766 + 1557941 I a score=95757.000000 s hg38.chr1_KI270765v1_alt 38049 54 + 185285 ctgtcccaagcaggggacaggggaggaaagaagccacctcactgaggaattttt s panTro4.chr1_AACZ03149435_random 147066 54 + 173505 ctgtcccaagcaggggataggggaggaaagaagccacctcactgaggaattttt i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11222138 54 + 72422247 CTGTCCCAGGCAGGGGGCAGgggaggaaaggagccacctcactgaggaattttt i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56414316 54 - 109391073 ctgtcccaggcaggggacaggggaggaaagaagccacctcactgaggaattttt i nomLeu3.chr12 C 0 C 0 s macFas5.chr1 125093763 54 - 227556264 ctatctcaggcaggggacaagggaggaaaggagccacctcactgaggaattttt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98600548 54 - 220367699 CTGTCCCAGGGAGGGGACAGGGGAAGAAAGGAGCCACCTCACTGAGGAATTTTT i papAnu2.chr1 C 0 I 263 s calJac3.chr21 50412376 54 - 50472720 CTGTCCCACGCTGGGGACAGGGGAGGAAAGGAGCCGCCTCTCTGAGGAATTTTT i calJac3.chr21 C 0 C 0 e chlSab2.chr20_KE148049v1_random 186470 766 + 1557941 I e rheMac3.chr1 128125090 2128 + 229590362 I a score=995727.000000 s hg38.chr1_KI270765v1_alt 38103 488 + 185285 aagaatgcccaaaagtccaattgaaagggcattacagccaggcatggtggctcacacctgtagtcccagcacttcaggaggccaagataggtggattgcctgagtccaggagttcaaaaccagcctgggcaacatggtgaaaccccatctctacaaaaaatac-aaagttagcca--ggtgtagtggcacacacct-tagtcccagctattcaggaggctgaggt-aggaggactgctt--------------gagcctgggagtttgaggctgcactgagctaatatcacaccactgcactccagcctgggtgacagagtgagactcggtctt-aaaaaa---------------------------aaaaagggcatcatagagtggcaaaaaaaaaaaaaaaaagagagagagagag--------aggggcctcagttaagtctacagctgctgtcacttattgaatcatctctactcttcagaataccatgaaattagttttcccagaagtaaaacgatgagagatacataacaataat s panTro4.chr1_AACZ03149435_random 147120 485 + 173505 aagaatgcccaaaagtccaactgaaagggcattacagccaggcatggtggctcacacctgtagtcccagcacttcaggaggccaagataggtggattgcctgagtccaggagttcaaaaccagcctgggcaacatggtgaaaccccatctctacaaaaaatac-aaagttagcca--ggtgtagtggcacacacct-tagtcccagctattcaggaggctgaggt-aggaggactgctt--------------gagcctgggagtttgaggctgcactgagctaatatcacaccactgcactccagcctgggtgacagagtgagactcggtcttaaaaaaa---------------------------aaaaagggcatcatagagtggcaaaaaaaaaaaaaa----agagagatagag--------gggggcctcagttaagtctacagctgctgtcacttattgaatcatctctactcttcagaataccatgaaattagttttcccagaagtaaaacgatgagagatacataacaataat i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11222192 497 + 72422247 aagaatgcccaaaagtccagttgaaagggcattacaaccaagcatggtggttcacacctgtaatctcagaacttcaggaggccaaggtggctggattgcttgagtccaggagttccagacaagcctgggcaacatggtaaaaccccatctctacaaaaaacacaaaaagtagcca--ggtgtagtggcacacacct-taatcccagctactcaggaggctgaggt-aggaggattgctt--------------gagcctgggagtttgaggctgcactgagctaagatcacaccactgcactccagcctgggtgacagagtgagactcagtctcagaaaaaaaggaaaac------------------aaaaagggcgtcataaagtggcaaaaaaaaaaaaga-gagagagagagagag--------aggggcctcagttaagtct-cagcttctgtcacttgttgaatcatctctagtcttcagaataccatgaaattagttttctcagaagtaaaatgatgagaaatacataacaataat i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56414370 490 - 109391073 aagaatgcccaaaagtccaactgcaagggcattacaaccaggcacggtggctcacacctgtaatcccagcacttcaggaggccaagataggtggattgcttgagtccaggagttcaaaaccagcct-ggcaacatggcgaaaacccatctctacaaaaaatac-aaagttagccagtggtgtagtggcacacgcct-tagtcccaactattcaggaggctgaggt-aggaggactgctt--------------gagcccgggcgttcgaggctgcactgagctaagatcacaccactgcattccagcctgggtgacatagtgagactcggtcttgaaaaaa---------------------------aaaaagggcatcatagtgtggcaaaaaaaaaaaaaaaaaaacagagagagag--------agaggcctcagttaagtctacagctgctgtcactcgttgaatcatctctactcttcagaataccatgaaattagttttcccagaagtgaaacaatgagaaacacataacaataat i nomLeu3.chr12 C 0 C 0 s macFas5.chr1 125093817 499 - 227556264 aagaaagcccaaaagtccaattgaaagggcATTACAAccagacacggtggctcacacctgtaatcccagcacttcaggaggcaaaggtgggtggattgcttgagtccaggagttcgagaccagcctgggcaacatggc------------------------aacaaattagcca--ggtgtagtggcacacacct-tagtccaagctactcaggaggctgaggt-gggaggattgctt--------------gaacctgggagttcgaggccacactgagctaagatcacaccactgcactccagcccgggtgacagagtgagactcagtctcaaaaaaaaaaaaaaaaaaaaaaatgaaaaGAAAGAAAAAGGGCATCATAGAGTGGCaaaaaaaaaaaaaa--aaagagagagagagagagagacagagGCCTCAGTGAAGTCTacagttgctgtcacttgttgaatcgtctctagtcttcagaataccatgaaattagttttctcagaagtaaaacaatgagaaatacataacaattat i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98600865 504 - 220367699 aaagatgtccaaAAGTCCAATTGAAAGGGCATTACaactaggcacggtggctcacatctgtaattccagcacttcaggaggccgaggtgggtggattgcttgagtcctagagttcgagaccagcctgggcaacatggccaaaccccatctccacaaaaaatacacaaattagccc--tgtgtagtggcacacacct-tagtcccagctactcaggaggctgaggtggggaggattgctt--------------gaggctgggagttcgaggctacactgagctaagatcacaccactgcactccagcccacgtgacagagtgagactcagtctcaaaaaaaaaaaaagaaaaaata------------aaaaagggcatcagagagtggtaaaaaaaaaaaaaa--agagagagagagag--------agaggcctcagTGAAGTCTACAGCTGCTGCCACTTGTTGAATCATCTCTAGTCTTCAGAATATCATGAAATTAGTTTTCCCAGAAGTAAAACAATGagaaatatataacaataat i papAnu2.chr1 I 263 C 0 s chlSab2.chr20_KE148049v1_random 187236 512 + 1557941 aagaatgtccaaaagtCCAATTGAAAGGGCATTACAAccagggacggtggctcacatctgtaattccagcacttcaggaggccgaggtgggtggattgcttgagtccaggagttggagaccagcctaggcaacatggcgaaaccccatctccacaaaaaatacacaaattagccc--tgtgtagtggcacacacct-tagtcccagctactccggaggctgaggt-gggaggattgcttgagcctgggagttcgagcctgggagttcgaggctacactgagctaagatcacaccactgcactccagcctgggtgacagagtgagactcggtctcaaaaaaaagaaaaaaga-----------------aaaaaGGGCATCATAGAGTGGTaaaaaaaaaaaaaa--aaaaaaaaaGAGAG--------AGAGGCCTCAGTGAAGTCTacagttgctgtcacttgttgaatcatctctagtcttcagaataccatgaaattagttttctcagaagtaaaacaatgagaaatacataacaattat i chlSab2.chr20_KE148049v1_random I 766 C 0 s calJac3.chr21 50412430 493 - 50472720 AAGAGTACCCAAAAGTCCAATGGAAGGGGCATTACAAccaggtgtagtggctcacagctgttatcccagcacctcacaaggccgaggtgggtggattgcccgagtccaggagttccagaccagcctgggcaacatggcaaagctccacctctactgaaaatacaaaaattaacca--ggtgtggtcgtatgtgcctgtaattccagctactcaggaggctgaggc-atgagaatcattt--------------aaacctgggaggcggaggttgcagtgagccaagattgtgccactgcactccaggctgggtggcaaagcgagactctgtctcaaaaaaaagacaaaaagaaaga------------aaaaaGGGCATCACAGAGTGGCCAG-------------AGAAAGAGAGAGAG--------AGAGGCCTCAGTTAAGTCTCCagctgctgtcacttgttgaatcatctctagtcttcggaataccatgcaattagttttctcagaagtaaagcgatgagaaacatgtaacaataat i calJac3.chr21 C 0 C 0 e rheMac3.chr1 128125090 2128 + 229590362 I a score=506223.000000 s hg38.chr1_KI270765v1_alt 38591 188 + 185285 gacaTTGCACTTCATCATTCCATGCCCTTCGACATTTATAGGGCCATGGATGGTGATCTTTTCAAGAGACAAAAATAAACGCC------AAACAGG-TAGGTGCGCTATAACTTGAGTACATCAGCTTTTGGGCATTTAAACCATGGGTCAGAAAT-TTAGAGCAAGAGGGCAGGTTGGATCTTGATAGCAGGAGG s panTro4.chr1_AACZ03149435_random 147605 188 + 173505 gacaTTGCACTTCATCATTCCATGCCCTTAGACATTTATAGGGCCATGGATGGTGATCTTTTCAAGAGACAAAAATAAACACC------GAACAGG-TAAGTGCACTATAATTTGAGTACATCAGCTTTTGGGCATTTAAACCATGGGTCAGAAAT-TTAGAGCAAGAGGGCAGGTTGGATCCTGATAGCAGGAGG i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11222689 194 + 72422247 gacaTTGCACTTCATCATTCCATGCCCTAAGACATTTATAGGGCCATGGATGGTGATCTTTTCAAGAGACAAAAATAAACGCTGGTGCAGAACAGG-TAAGTGCGCTATAATTTGAGTACATCAGCTTTTGGGCATTAAAATCATGGGTCAGAAAT-TTAGAGCAAGAGGGCAGGTTGGATCCTGATAGCAGGAGG i ponAbe2.chrUn C 0 I 322 s nomLeu3.chr12 56414860 189 - 109391073 gacaTTGCACTTCATCATTCCATGCCCTTAGACATTTATAGGGCCATGGGTGGTGATCTTTTCAAGAGACAAAAATAAACGCC------GAACAGGTTAAGTGCGCTATAATTTGAGTACATCAGCTTTTGGGCATTTATACCATGGGTCAGAAAT-TCAGAGCAAGAGGGCAGGTTGGATCCTGATAGCAGGAGG i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128127218 190 + 229590362 GACATTGCATTTCATCATTCCATGTCTTTAGATATTTA-AGGGCCATGGATGGTGATCTCCTCCAGAGAC-AAAATAAATGCTGGT-CAGAACAGG-TAAGTGTAGTATAATTTGGGTACATCAGCTTTT-GGCATTTCAACCAT-GGTCAGACATGTTAGAGCAAGAGGGCAGGTTGCATCCTGATAGCAGGAGG i rheMac3.chr1 I 2128 C 0 s macFas5.chr1 125094316 194 - 227556264 gataTTGCACGTCATCATTCCATGCCTTTAGACATTTACAGGGCCATGGATGGTGATCTTTTCAAGAAACAAAAATAAACGCTGGTGCAGAACAGG-GAAGTGTGCTATAATTTGAGTACATCAGCTTTTGGGCATTTAAACCATGGGTCAGAAAT-TTAGAGCAAGAGGGCAGGTTGGATCCTGATAGCAGGAGG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98601369 179 - 220367699 GACAATGCACATCATCATTCCATGCCCTTACACATTTATAGGTCCATGGATGGTGATCGTTTCAGGAGAC------AAATGCTGGTGCAGAACAGG-TAAGTGCGCTATAATTTGAGTACAACAGTTTTTGAGCATTTAAACCATGGTTCCGAAAT-GTAGAGCAAGGGGGCAGGTTGGATCCTGAT--------- i papAnu2.chr1 C 0 C 0 s chlSab2.chr20_KE148049v1_random 187748 194 + 1557941 gacGTTGCACGTCATCATTCCATGCCTTTAGACATTTACAGGGCCATGGATGGTGATCTTTTCAAGAAACAAAAATAAACGCTGGTGCACAACAGG-TAAGTGTGCTATAATTTGAGTACATCAGCTTTTGGGCATTTAAACCATGGGTCCGAAAT-TTAGAGGAAGAGGGCAGGTTGGATCCTGATAGCAGGAGG i chlSab2.chr20_KE148049v1_random C 0 C 0 s calJac3.chr21 50412923 194 - 50472720 gacaTCGCACTTCATCATTCCATGCCCTTAGACATTTATAGGGCCATGGATGGTGATCTTTTCAAGAGACAAAAATAAACGCTGGTGCAGAACAGG-CAAGTGCACTGTAATTTGAGTACATCCGCTTTTGGGCATTTAAATCATGGGTCACGAAT-TTAGAGCAAGAGGGCGGGCTGGATCCTGATAGTGGGAGG i calJac3.chr21 C 0 C 0 a score=234487.000000 s hg38.chr1_KI270765v1_alt 38779 92 + 185285 GAGTGTTTTTCTTTTAACTTTCCAGTGGCATCATGG---------------------------------TGTTAACCACTGTTATTTCAGAGTGAAGAAACAATTTTTTGTTTGGTTGGTTTTGT s panTro4.chr1_AACZ03149435_random 147793 92 + 173505 GAGTGTTTTTCTTTTAACTTTCCAGTGGCATCATGG---------------------------------TGTTAACCACTGTTATTTCAGAGTGAAGAAACAATTTTTTGTTTGGTTGGTTTTGT i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11223205 92 + 72422247 GAGTGTTTTTCTTTTAACTTTCCAGTAGCATCATGG---------------------------------TGTTTACCACTGTTATTTCAGAGTGAAGTGACAATTTTTTGTTTGGTTGGTTTTGT i ponAbe2.chrUn I 322 C 0 s nomLeu3.chr12 56415049 92 - 109391073 GAGTGTTTTTCTTTTAGCTTTCCAGTGGCATCATGG---------------------------------TGTTTACCACTGTTATTTCAGAGGGAAGCAACAATTTTTTGTTTGGTTGGttttgt i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128127408 92 + 229590362 GAGTGTTTTTCTCTTAACTTTCCAATAGCATCATGG---------------------------------TGTTTACCCCTGACATTTCAGAGTGAGGCAACAATTTTTTGTTTGGTTGGttttgt i rheMac3.chr1 C 0 I 35 s macFas5.chr1 125094510 89 - 227556264 GAGTGTTTTTCTTTTAACTTTCCAATAGCATCATGG---------------------------------TGTTTACCACTGTCGTTTCAGAGTGA---ACTAATTTTTTGTCTGGTTGGTTTTGT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98601548 76 - 220367699 ----------------ACTTTCCAGTGGCATCATGG---------------------------------TGTTTACCACTGTTATTTCAGAATGAAGCGacaattttttgtttggttggttttgt i papAnu2.chr1 C 0 C 0 s chlSab2.chr20_KE148049v1_random 187942 92 + 1557941 GAGTGTTTTTCTTTTAACTTTCCACTAGCATCATGG---------------------------------TGTTTACCACTGTTATTTCAGAATGAAGCGACAATTTTTTGTTTGGTTGGTTTTGT i chlSab2.chr20_KE148049v1_random C 0 C 0 s calJac3.chr21 50413117 125 - 50472720 GAGTGTTTTTCTTTTAGCTTTCCAACAGCAtcacggttggtgtcgctgttggtgtcacggttggtgtcatggttACCACCGTTATTTTGGAGTGAAGTGATGATTTTTTGCTTGGTTGGTTTTTC i calJac3.chr21 C 0 C 0 a score=93307.000000 s hg38.chr1_KI270765v1_alt 38871 42 + 185285 ACtttttatttttattataattactttttaagacaaggactc---- s panTro4.chr1_AACZ03149435_random 147885 42 + 173505 ACtttttatttttattataattactttttaagacaaggactc---- i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11223297 42 + 72422247 ACtttttatttttattataattactttttaagacaaggactc---- i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56415141 42 - 109391073 actttttatttttgttataactactttttaagacaaggactc---- i nomLeu3.chr12 C 0 C 0 s macFas5.chr1 125094599 42 - 227556264 ACTTTTTATTCTTATTATAATTACtttttgagacagggactc---- i macFas5.chr1 C 0 I 4 s papAnu2.chr1 98601624 42 - 220367699 actttttatttttattataattactttttaagacaaggactc---- i papAnu2.chr1 C 0 C 0 s chlSab2.chr20_KE148049v1_random 188034 42 + 1557941 ACtttttatttttattataattactttttgagacagggactc---- i chlSab2.chr20_KE148049v1_random C 0 I 4 s calJac3.chr21 50413242 46 - 50472720 ACTTTATAtttttattattgttactttttaagatagggtctcattc i calJac3.chr21 C 0 C 0 e rheMac3.chr1 128127500 35 + 229590362 I a score=334466.000000 s hg38.chr1_KI270765v1_alt 38913 128 + 185285 tgtctcccaggctggaattcagtgacaagatcacagctcagtacagccttgacctcttgacctccaaggctc--aatgg----------ctcatcctcccaagcagctgggactacaggcacacaccaccacacgcagct s panTro4.chr1_AACZ03149435_random 147927 128 + 173505 tgtctcccaggctggaattcagtgacaagatcacagctcagtacagccttgacctcttgacctccaaggctc--aatgg----------ctcatcctcccaagcagctgggactacaggcacacaccaccacacgcagct i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11223339 128 + 72422247 tgtcttccaggctggagtgcagtggcaagatcacagctcagtgcagccttgacctctagacctccaaggctcaaaatgg----------ctcagcctcccaagcagctgggactacaggcacacatcaccacacccag-- i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56415183 128 - 109391073 tgtctcccaggctggaattcagtagcaagatcacagctcagtacagccttgacctcttgacctccaaggctc--aatgg----------ctcagcctcccaagcagctgggactacagacacacaccaccacacccACCt i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128127535 137 + 229590362 tgttgcccaggctggagtgctgtggcaacatcacaacccaggtcaggcctgacctcttgaccttcagggctc--catgaatcatcctacctcagcctcccaagt-gctggagttacaggcacacaccaccacacccagct i rheMac3.chr1 I 35 C 0 s macFas5.chr1 125094645 128 - 227556264 tgtctcccaggctggagtgcagtggcaagatcacagctcagtacagccttgacctcttgacctccaaggctc--aatgg----------ctcagcctcctaagcagctaggattacaggcacacaccaccacacccagct i macFas5.chr1 I 4 C 0 s papAnu2.chr1 98601666 128 - 220367699 tgtctcccaggctagagtgcagtggcaagatcacagctcagtacagccttgacctcttgaccTCCAAGGCTC--AAAGG----------CTCaacctcctaagcagctgggactacaggcacacaccaccacacccagct i papAnu2.chr1 C 0 I 316 s chlSab2.chr20_KE148049v1_random 188080 120 + 1557941 tgtctcccaggttggagtgcagtggcaagatcacaggtcagtacagccttgacctc--------caaggctc--aatgg----------ctcagcctcctaagcagctaggattacaggcacacaccaccatacccagct i chlSab2.chr20_KE148049v1_random I 4 C 0 s calJac3.chr21 50413288 126 - 50472720 tgttgctcaggctggagtgtagtggcaagatcacagctcagtacagccttgttcccttgtcctccagggctc--aatgg----------ctcagcctcccaagcagctgggact--cagcacacaccaccaggcccagct i calJac3.chr21 C 0 C 0 a score=1961386.000000 s hg38.chr1_KI270765v1_alt 39041 727 + 185285 TAtttatttattttttgagacagggtctcattctgttgcccaggctggagtgcagtggcgtcatcagggtttgctgcaggtttg----aactccttagctcaagtcatcctctcacctcatgctcctgagtagctgggactacaggtgggcaccaccacacccagctaatttgtatatattttatagagccagtgtttcaccattttgccc---aggctagtctcaaacccctgtgctcaagtgatccttctgccttggcctcccaaagtgctgggattacaggcAATTATTTTGACAATACGATTACGATGGGTTAAACTGAGACTTGCAGCAGGAAGGTTAGGGT-------------------GAGTCAGACAGATTAGA-TAAACAGGTTTTGCTTGATATGACCCTGAGTTGCATCGTGAGTGCAATCAGGAGGAATACAGGTGAAATTTAGCACAGGATGTACCAATGGGTCATTATGGTCAAAAGTGGTTTGTGGTTTTGAGTGGCAAACCTGGAACCTTGTCAAATTTCCCACAGAGGTAATGGTTTGTGAGATTCTAATCAGAGAATTATCCCTCCCTGCTGTAATCAAATTAATTAGGGACAGTAAAACAGAAATCTGATCACAGgtattctgctatgt----------atgtatgtatgtatatgtatataCACATACACGCAAGAGGAGTAGTGTGTCATATCTTAAGAGAATATGCATATAGGGTGATTTTACC---AAAACCACCAAGAGACA s panTro4.chr1_AACZ03149435_random 148055 727 + 173505 TAtttatttattttttgagacagggtctcactctgttgcccaggctggagtgcagtggcgtcatcagggttcgctgcaggcttg----aactccttagctcaagtcatcctctcacctcatgctcctgagtagctgggactacaggtgggcaccaccacacccagctaatttgtatatattttatacagtcagtgtttcaccattttgccc---aggctagtctcaaacccctgtgctcaagtgatccttctgccttggcctcccaaagtgctgggattacaggcAGTTATTTTGACAATATGATTATGATGGGTTAAACTGAGATGTGCGGCAGGAAGTTTAGGGT-------------------GAGTCAGACAGATTAGA-TAAACAGGTTTTGCTTGATATGACCCTGAGTTGCATCGTGAGTGCAATCAGGAGGAATACAGGTGAAATTTAGCACAGGATGTACCAATGGGTCATTACAGTCAAACGTGGTTTGTGGTTTTGAGTGGCAAACCTGGAACCTTGTCAAATTTCCCACAGAGGTAATGGTTTGTGAGATTCTAATCAGAGAATTATCCCTCCCTGCTGTAATCAAATTAATTAGGGACAGTAAAACAGAAATCTGATCACAGGTATTCTGCtatgt----------atgtatgtatgtatatgtatatACACATACACGCAAGAGGAGTAGTGTGTCATATCTTAAGAGAATATGCATATAGGGTGATTTTACC---AAAACCACCAAGAGACA i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11223467 723 + 72422247 --tttatttattttttgagacaaggtctcactctgttgtccaggctggagtgcagtggcatcgtcagggttcactgcaggctcgatccaactcctgagctcgagtcgtcctctcacctcatgctcctgagtagct-ggactacaggtgggcaccaccacacccagctaatttgtatatattttacagagtcagtgtttcaccattttgccc---aggctagtctcaaactcctgggctcaagtgatcctcctgccttggcctcccaaagtgctgggattacaggcAGTTATTTTGACAATACGATTACGAT-GGTTAAACTGAGATGTGAGGCAGGAAGGTTAGGGT-------------------GAGTCAGATAGATTCGA-TAAACAGGTTTTGCTTGATATGACCCTCAGTTGCATCGTGAGTGCAATCAGGAGGAATACAGGTGAAATTTAGCACAGGATGTACCAGTGGTTCATTACGGTCAAAAGTGGTTTGTGGTTCTGAGTGGCAAACCTGGAACCTTGTCAAATTTCCCACAGCAGTAGTGATTTGTGAGATTCTGATCAGAGAATTATCCCTCCCTGCTGTAATCAAATTAATTAGGGACAGTAAAACAGAAATCTGATCATAGGTATTTTGC----T----------ATGTGTGTATGTATACATATATACACATACACGCAATAGGACCAGTGTGTCATATCTTAAGATAATATGCATATAGGGTGATTTTATG---AAAACCACCAAGAGAGG i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56415311 723 - 109391073 tatttatttattttttgagacagggtctcactccgatgcccaggctggagtgcagtggcgtcatcagggtttactgcaggctcg----aactcctgagctcaactaatcctctcacctcatgctcctgagtagctgggactataggtgggcaccaccacacccagctaatttgtatatattttatagagtcagtgtttcaccattttcccc---aggctagtctcaaaccgctgtgctcaagtgatcctcctgccttggcctcccaaagtgctgggattacaggcAGTTATTTTGACAATACGATTATGATGAGTTAAACTGAGATGTGAGGCAGGAAGGTTAGGGT-------------------GAGTCAGACAGATTCAA-TAAACAGGTTTTGCATGATATGACCCCGAGTTGCATCGTCAGTGCAATCAGGAGGAATACAGGTGAAATTTAGCACAGGATGTACCAACCGGTCATTATGGCCAAAAGTGGTTTGTGGTTTTGAGTGGCAAACCTGGAACCTTGCCAGATTTTCCACAGAGGTAATGGTTTGTGAGATTCTGATCAGAGAATTATCCCTGCCTGCTGTAATCAAATTAATTAGGGACAGAAAAACAGAAATCTGATCACAGGCATTCTGC----T----------ATGTATGTATGTGTATGTACATACACATACACGCAATGGGAGTAGTGTGTCATATCTTAAGAGAATATGCACATAGGGTGATTTTACC---AAAACCACCAAGAGACA i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128127672 735 + 229590362 TAtttatttactttctgagacagtgactcactctgttgcccagtctggagtgcagtggagtcatcaggattcactgcaggctcg----aactcctgagctcaagtcatcctctcacttcatgctcctg-gtagctgggactaaaggtgggcaccaccatgcccagctaatttttgtatatcttgtagagacagggattcatcattttgcccaggaagctagtctcaaactcctgggctcaagtgatcctcctgccttggcctcccaaagtgctgggattacaggcAGTTATTTTGACGGTACAATTATGATGGGTTAAACTGAGACATGGGGCTGGAAGGTTAGGAT-------------------GAGTCAGACAGATTCGA-AAAACAGGTTTTGCTTGATGTGACCCTGATTTGCATTGTCAGTACAATAAGGAGGAATACTGGTGAAATTTAGCACAGGATGTACCAATGGATCATTATGGTCAAAAATGGTTGGTGGTTTAAGGTGGCAAACTCAGCACCTTGTCAAATTTCCCACAGTGGCAATGGTTTGTGAGATTCTGATCAGAGAATTATCCCTCCCTGCTGTAATCAAATTAATTAGGGAGAGTAAAACAGAAATCTGACCATAGGCATTTTGC----TAtatatgtacatgtatgcatgtatatgtatatACACATACATGCAATAGAACTAGTGTGCCATATCTTAAGATAATATACATATAAGGTGATTTTACC---AAAACCACCAAGAGAGA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 125094773 721 - 227556264 TAtttatttatttttggagacagggtctcactctgttgcccaggctggagtgcagtcgcgtcatcagggttcactgcaggcttg----aactcctgagctcaagtcattctctcacctcatgatcctgagtagct-gaactacaggtgggcaccaccacacccagctaatttgtatatattttgtagagtcagtgtttcaccattttgccc---aagctagtctcaaactcctgggctcaaatgatcctcctgccttggcctcccaaagtgctgggattacaggcAGTTATTTTGACAATACGATTATGATGGGTTAAACTGAGACACGAGGCAGGAAGGTTAGGGT-------------------GAGTCAGAAAGATTTAATGAAACAGGTTTTGCTTGATATGACCCTGAGTTGCATCATGAGTGCAATCAGGAGGAATACAGGTAAAATTTAGCACAGGATGTGCCAATGG-TCATTATGGCCAAAAGTGGTTGGTGGTTTAAGGTGGCGAACCCAGCACCTTGTTAAATTTCCCATAGT-GCAATGGTTTGTGAGATTCTGATCAGAGAATTATCCCTCCCTGCTATAATCAAATTAATTAGGGACAGTAAAACAACAATCTGATCATAGGCATTTTGC----t----------atgtatgtatgtatatgtatataCACATACACGCAACAGGACTAGTGTGTTGTATTTTTAGAGAATATACGTATAGGGTGATGTCACC---AAAACCTCCAAGAGAGG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98602110 720 - 220367699 tatttatttattttttaagacaatgtctcactc--ttgcccaggctggagtgcaggggcatcaTCAGGGTTCACTGCAGgcccg----aactcctgagctcaagtaatcctctcacctcatactcctgagtagctgcaactacaggtgggcaccaccacccccagctaatttctatatattttatagagtcagtatttcaccattttgccc---aggctagtctcaaacccct-ggctcaagtaatcctcctgtcttggcctcccaaagtgctagaattacaggccgTTGTTTTGACAATGTGATTATGATGGGTTAAACTGAGACGTGGGGCAGGAAAGTTAGGGT-------------------GAGTCAGACAGATTCAA-TAAACAGGTTTTGCTTGTTATGACTCTGAGTTCCATCATGAGTGCAATCAAGAGGAATGCAGGTGAAATTTAGCACAGGATGTACCAATGGGTCATTATGATCAAAAGTggtttgtggttttgattggcaaaCCTGAAACCTTGTCAAATTTCCCACAGCGGTAATGGTTTGTGAGATTCTGATCAGAGAATGATCCCTCCCTGCTGTAATCAAATTAATTAGGGACAGTAAAACAGAAATCTGATCATAGGCATTTtgc----t----------atgtatgtatgtatatgtatatatacatacaggcAATAGGACTAGTGTGTCATATCTTTAGAGAATATGCATATAGGGTGATTTCACC---AAAACCACCAAGAGAGG i papAnu2.chr1 I 316 I 230 s chlSab2.chr20_KE148049v1_random 188200 740 + 1557941 TAtttatttatttttggagacagggtctcactctgttgcccaggctggagagcagtgccatcatcagggttcactgcaggcttg----aactcctgagctcaagtcattctctcacctcatgatcctgagtagct-gaactacaggtgggcaccaccacacccagctaatttgtatatattttgtagagtcagtgtttcaccattttgccc---aagctagtctcaaactcctgggctcaaatgatcctcctgccttggcctcccaaagtgctgggattacaggcAGTTATTTTGACAATACGATTATGATGGGTTAAACTGAGACACGAGGCAGGAAGGTTAGGGTGAGGCAGGAAGGTTAGGGGGAGTCAGAGAGATTTAATGAAACAGGTTTTGCTTGATATGACCCTGAGTTGCATCATGAGTGCAATCAGGAGGAATACAGGTAAAATTTAGCACAGGATGTACCAATGG-TCATTATGGCCAAAAGTGGTTGGTGGTTTAAGGTGGCGAACCCAGCACCTTGTTAAATTTCCCATAAT-GCAATGGTTTGTGAGATTCTGATCATAGAATTATCCCTCCCTGCTATAATCAAATTAATTAGGGACAGTAAAACAACAATCTGATCATAGGCATTTTGC----t----------atgtatgtatgtatatgtatataCACATACACGCAATAGGACTAGTGTGTTGTATTTTTAGAGAATATACGTATAGGGTGATTTCACC---AAAACCTCCAAGAGAGG i chlSab2.chr20_KE148049v1_random C 0 C 0 s calJac3.chr21 50413414 710 - 50472720 TATGTAtttattttttgagacagggtcacactcttttgcccaggctggagtgcagtggcatcatcagggttcactgcaagcttg----aactcctgaggtcaagtgatcctctcacctcatacccctgagtagctgggactacaggtgagcaccaccacacccagataatttgtatatattttgtagagacagggtttcaccattttaccc---aggttcatctcaaactcctcggctcgagtgatactcctgcctcagcctcccaaagtgctgggatcacaggcAGTTATTTTGACAGTATGATTAT-ATGGATTAAACTGACA---------------TTAGGAT-------------------GTCTCAGACAGATCTGA-TAAACAGCTTTTACTTGATATGACCCTGAATTGCATTGTGACTGCGATGAGGTGGAACGCCAGTGAAATTTAGCAGAGGATGTACCAATAGGTCATTATGTTCAAAAGCGGTTTGTGGTTCTGAGTGGTAAACCTGGCACCTTATCAAATTTCCCACATTGCCAATAGTTTGTGAGATTCTGATTTGAGAAGTATCCCTCCATGCTGTAATCACATTAATTAGGGACAGTAAAACAGAAACCTGATCAGACACATTGTGC----T----------ATGTATGTATGTATATGTATATACACACATACACAATAGGGCTAGTGTGTCAGATGTTAAGAGAATATGCATATAGGGTGATTTTACCAAAAAAACCACCAAGAGAAA i calJac3.chr21 C 0 C 0 a score=1799460.000000 s hg38.chr1_KI270765v1_alt 39768 699 + 185285 ACCCCTACAACTTAAAGGAGCCCTAATGGTGTATGTATTCCAGTCCGCA-AAAAAGAGACTAACTCTCTCAGGCACGGTCAGCACTGGAATT----GTAACTGATtatacaggccagtatcttgggtgaaagcggactacaccagatgtcagctacttgccatctctgtcaggaagattgtgagttacctctaagtgaaaatctccactgatagatgtccactctggtagggttgccttttacaagagaaacatgaatccatgtgtcaacgcccttatgtttactggcac--agattggtcagtaatacctgttgtcagttaggtgcagtggcctatgcctgtgg----tcccaaatatttggaaggttgaggcagaagggtggcttgagcccaggggttcaaggctacagtgagtcatgattgtgccactgcattctggcttggggaataaaatgagatcccatctc-aaaa--------aaat-at----ataaagtaataataatagctgatgtggtcccttccaacagtcttggggagaatattttatttgatgttgtttccagtaaacaacaacatctccaggttataggccaagatttttgatattttcatctcccaggagttcattatgaatggaattctttgttaatgtagagttcttagta---agttctgtgagatcttagcagtaatggagaatgtcacctttaagaagtgcagat s panTro4.chr1_AACZ03149435_random 148782 699 + 173505 ACCCCTACAACTTAAAGGAGCCCTAATGGTGTATGTATTCCAGTCAGCA-AAAAAGAGACTAACTCTCTCAGGCACGGTCAGCACTGGAATT----GTAACTGATtatacaggccagtatcttgggtgaaagcggactacaccagatgtcagctacttgccatctctgtcaggaagattgtgagttacctctaagtgaaaatctccactgacagatgtccactctggtagggttgccttttacaagagaaacatgaatccatgtgtcaacgcccttaagtttactggcac--agattggtcagtaatacctgttgtcagttaggtgcagtggcctatgcctgtgg----tcccaaatatttggaaggttgaggcagaagggtggcttgagcccaggagttcaaggctacagtgagtcatgattgtgccactgcattctggcttggggaatagaatgagatcccatctc-aaaa--------aaat-at----ataaaataataataatagctgatgtggtcccttccaacagtcttggggagaatattttatttgatgttgtttccagtaaacaacaacatctccaggttataggccaagatttttgatattttcatctcccaggagttcattatgaatggaattctttgttaatgtagagttcttagta---agttctgtgagatcttagcagtaatggagaatgtcacctttaagaagtgcagat i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11224190 693 + 72422247 ACCCCTACAACTTAAAGGAGCCCTAATGGTGTATGTATTCCAGTCAAC--AGAAAGAGACTAACTCTTTCAGGTGCAGTGAGCACTGGAATT----GTAACTGATtatacaggccagtatcttgggtgaaagcagactaccacagatgtcagctacttgccatctctgtcaggaagat--tgagttacctttaagtgaaaatctccactgacagatgtccactctggcagggttgccttttacaagagaaacatgaatccatgtgtcaacgcccttaagtttactggcac--agattggtcagtaatacctgttgtgagtcaggtgcagtggcccatgcctgtgg----tcccaattctttggaaggttgaggcagaaggatggcttgagcccaggagttcaaggctataatgagtcatgattgtgccaccgtattctgccttggggaatagaatgagatcccatctcaaaaa--------aaat-gt----ataaaataataataatacctgatgtggtcccttccaacagtcttggggggaatattttatttgatgttgtttctagta---aacaacatctccaggttataggccatgatttttagtattttcatctcccaggagttcattatgaaaagaa-tccttattaatgtggagttattagta---atttttgagatatcttagcagtaacggagaatgtcacctttaaaaaatgcagat i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56416034 701 - 109391073 ACCCCTACAAGTTAAAGGAGCCCTAATGGTGTATGTATTCCAGTCACCAGAAAAAGAGACTAACTCTTCCAGGCGCAGTCAGCACTGGAATT----GTAACTGATtatacaggccagtatcttgggtgaaagcagactacaccagatgtcagctacttgccatctctgtcaggaagattgcgagttacctctgagtgaaaatctccactgacagatgtccactctggcagggttgccttttacaagagaaacatgaatccatgtgtcaatgcccttaagtttaatggcac--agattggtcagtaatacctgctgtgagtcaggtgcagtggcccatgcctgtgg----tcccaactatttggaaggttgaggcaaaaggacggcttgtgcccaggagttcaaggctacagtgagtcatgattttgccactgcattctggcttggggaatagaatgagatcccatctc-aaaa--------aaataac----ataaaataataataatagctgatgtggtcccttccaacagtcttggggagaatattttgtttgatgttgtttccagtaaacaacaacatctccaggttataggccaagatttttggtagtttcatctcccaggagttcattatgaatggaatcctttgttaatgtagagttcttagta---agttttgtgagatcttagcagtaatggagaatgtcccctttaagaagtgcagat i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128128407 691 + 229590362 ACCCCTACAACTTAAAGGAGCCTTAACGGCATATGTATTCCAGTCAATAGAAAAAGCGACCAACTCTTTCAGTTGCAGTAAGCCCTGGAATTGTGAATAACTGGTTATACA-GCTGGTATGTTTGGCAAAAGTGGACTACAACAGATGTCAGCTACTTGCCATCTTGGTCAGGAATATTGCAGGTCACCTTTAAGTGAAAACCTCCACTGACAGATGTCGACTCTGGTAGGG---------ATatgagaaacatgaatctgtatgtcaatgcccttatgtttcctgccacagagattgggcaataatacctgccgtgagccaggtgccgtggcccacacttctgg----tcccagctacttgggagactgaggcacgaagatggctttatgtcaggagttaaaggctacagtgagtcataattgctccactgcattctggcctgggcaacagagtgagaccccatctc-aaaa--------aaaa-aa------ttaatattaataatacct-acttggtgccttccagtggacttggagggaata-tttacttgatgttgtttccagta---agcaacatctccagtttatatg-cataatttttgatattttcatctcccagcagctcattatgaaaggcatcctttattaattcggagctcttggtaaggagtcttgtgagaccttagcaatgacagagaatgctacctttaagaagtgctggt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 125095494 677 - 227556264 ACCCCTACACCTTAAAGGATCCCTAACAGTGTATGTATTCCAGTCAACAGAAAAAGACACTAACTCTTTCAGGTGCAGTGAGCActggaatt------------------------gtatcttgggcaaaagcggactacaacagatgtcagctacttgccatctctgtcaggaagattgcaagttacctttaagtgaaaatctccactgacagatgtccaccctggtagggttgccttttacaagagaaacattaatccatgtgtcaacacccttaagtttaccggcac--agattggtcagtaaca-ctgtcgtgagtcaggtgcggtggtccatgcctgtgg----tctcaactatttggaaggttgaggcagaaggatgacttgagcccaggagttcaaggctacagtgagtcatgattgtgccactgcattctggcttggggaacagaatgagatcccatctc-aaaa--------aaat-aa------cataaaataataatacccgatgtggtcccttgcaacagtcttggggggaatattttatctgatgttgtttccagtgtacaacaacatctccaggttataggccgtgatttttgatattttcttctcccaggagttcgttatgaaaggaatcctttgttaatgtagagttcttagta---agttttgtgagatcttagcagtaatggagaatgtcaactttaagaagtgcagat i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98603060 696 - 220367699 acCCCTACAACTTAAAGGAGCCCTAATAGTGTATGTATTCcagtcaacagaaaaagagactaAC----TCAAGTGCAGTGAGCACTGGAATT----GTAACTGATTATATAGGCCAGTATCTTGGGCGAAAGCAGACTACATCTGGTGTCAGCTACTTGCCATCTCTGTCAGGAAGATTGCGAGTTACCTTTAAGTGAAAATCTCCACTGACAGATGTCCACTCTGGTAGGGTTGCCTTTTACAAGAGAAACATGAATCTGTGTGTCAACGCCCTTAAATTTACTGGCAC--AGATTGGTCAGTAACA-CTGTTgtgagtcaggtgtggtggtccatgcctgtgg----tctcaactatttggaaggttgaggcagaaggatgacttgagcccaggagttcaaggctacagtgagtcatgattgtgccactgcattctggcttggggaacagaatgagatcccatctc-aaaa--------aaaa-aaaaacataaaataataataatacctgatGTGGTCCCTTCCAACAGTCTTGGGgggaatattttatttgatgttgTTTCCAGTG---AACAACATCTCCAGGTTATAGGCCGtgatttttgatattttcatctCCCAGGAGTTCATTATGAAAGGAATCCTTTATGAATGTAGAGTTCTTAGTA---AGTTTTGTGAGATCTTAGCAGTAATGGAGAATGTCAACTTTAAGAAGTGCAGAT i papAnu2.chr1 I 230 C 0 s chlSab2.chr20_KE148049v1_random 188940 677 + 1557941 ACCCCTACACCTTAAAGGAGCCCTAACAGTGTATGTATTCCAGTCAACAGAAAAAGAGACTAACTCTTTCAGGTGCAGTGAGCActggaatt------------------------gtatcttgggcaaaagcggactacaacagatgtcagctacttgccatctctgtcaggaagattgcaagttacccttaagtgaaaatctccactgacagatgtccactctggtagggttgccttttacaagagaaacatgaatccatgtgtcaacacccttaagtttaccggcac--agattggtcagtaaca-ctgttgtgagtcaggtgcggtggtccatgcctgtgg----tctcaactatttggaaggttgaggcagaaggatgacttcagcccaggagttcaaggctacagtgagtcatgattgtgccactgcattctggcttggggaacagaatcagatcccatctc-aaaa--------aaat-aa------cataaaataataatacccgatgtggtcccttgcaacagtcttggggggaatattttatctgatgttgtttccagtgtacaacaacatctccaggttataggccgtgatttttgatattttcttctcccaggagttcgttatgaaaggaatcctttgttaatgtaaagttcttagta---agttttgtgagatcttagcagtaatggagaatgtcaactttaagaagtgcagat i chlSab2.chr20_KE148049v1_random C 0 C 0 s calJac3.chr21 50414124 707 - 50472720 ACTCCTACAACTTAAAGGAGCCCTAACGGTGCACGCATTCCAGTCAACAGAAAAATAGATAAACTCTTTCAGGCGCGGTAAGCACTGGAATT----GTAACTGGTtacacaggccagtatcttgcactaaacgggactacaacaaatgtcagctatttgccatctcggtcaggaagattgtgagtcacctttaagtgaaaatctccactgacaggtgtctgctctggtagggttaccttttataagagcaacatgaatccatgtgtcaatgcccttaggtttcctggcacagagattggtcaatacgacctgatgtgAgccaggtgcact-gtacatgcctgtagtccctcccagctacttggaaggatgaggcagaaggatggcttgagcccaggagtttgaggctaca-tg---catgattgtatcactgcattatgggttggggaaaactgtgagattccatctc-aaaaaaaataataaat-aa----aTAAAATAATAATAATACCTGATGTGGTCCCTTCCAACAGGCTTGGAGGGAATATTTTATTTGTTGTTGTTTCCAGTC---AACAACATCTCCAGGTTATAGGCTATGATTTCTGATATTTTCATCTCCCATGAGTTCATCATGAAAGGAATCCTTTATTAATGAAGAGTTCTTCATAAGAAGTTTTGTGAGATCTTAGCAATAATGGAGAATGTCACC--TAAGAAGTGCAGAT i calJac3.chr21 C 0 I 144 a score=806657.000000 s hg38.chr1_KI270765v1_alt 40467 302 + 185285 tcataagcgccttcatctaaccactgcaagggtcttcctgttattatttcaaagagggagagtgtggacgttttccacaaccagtgggagatccttgtccaagaaaggttaaaaacttctgttagctttgccaattgagtttttattgtatcattagtgcattccatcggcccagaggattaggggtgacaggcacaatggaaatgttgagacttaggcaaaaatgttacaaatggatcaaattacctgaccaatgaagtgtgttcctcggtttctatggagttcagatggcaccccccatg s panTro4.chr1_AACZ03149435_random 149481 302 + 173505 tcataagcgccttcatctaactactgcatgggtcttcctgttattatttcaaagacagagagtgcggacattttccacaaccagtgggagatccttggttaagaaaggttaaaaacttctgttagctttgccaattgagtatttattgtatcattagtgcattccatcggcccagaggattaggggtgataggcacaatggaaatgttgggacttaggcaaaaatgttacaaatggatcaaattacctgaccaacgaagtgtgttcctcggtttctatggagttcagatggcaccccccatg i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11224883 301 + 72422247 tcataagcgccttcatctaaccgctgcatgggtcttcctgttattatttcaaagagagagagtgtggacattttccagaaccagtgggagatccttggccaagaaaggttaaaaatttctgttagctttgccaattgagtttttattgtatcattagtacattccatcagcccagaggattatgggtgataggcacaatggaaatgttgggacataggc-aaaacgttacaaatggatccaattacctgaccaatgaagtgtgttcctcagttgctacagagttcagatggcacttcccata i ponAbe2.chrUn C 0 I 316 s nomLeu3.chr12 56416735 301 - 109391073 tcataagcgccttcgtctaaccactgcatgggtcttcctgttattatttcaaagagagagagtgtggacattttccagaaccagtgggagatccttggctaagaaaggttaaaaacttctgttagctttgccaattgaatttttattgtatcattagtgcattccatcggcccagaggattaggggtgacaggcacaatggaaatgttgggacatagac-aaaacgttgcaagtggatccaattacctgacccatgaagtgtgttcctcggttgctatggagttcagatggcactccccagg i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128129098 286 + 229590362 tcataagccccttcatctaaccactgcatgggtcttcctgttattatttcaaaggg--agacagtggaagttttccagaagcagtgggtgatctctggctaggg-------------tctgttagttttgttgattgggtttttattgtatcattattgagttgcaccagtccagaggattaggggtgataggcacaatggaaatgttgggacataggc-caaacgttgcaaatggatccaactacctgcctgatacagtgtgttcctcggttgctatggagatcagatggcactccccatg i rheMac3.chr1 C 0 C 0 s macFas5.chr1 125096171 301 - 227556264 tcataagcaccttcatctaaccactgcatgggtcttcctgttattatttcaaagagacagagtgtggacattttccagaaccagtgggagatccttggccaagaaaggttaaaaacttctgttagctttgccaattgagtttttattgtatcattaatgcattccatcagcccggaggattaggggtgataggcacaatggaaatgctggtacacagaa-aaaacgttacaaatcgatccaattacctgacccatgaagtgtattcctcggttgctatggagttcagatggcaatccccatg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98603756 301 - 220367699 TCATAAGCGCCTTCATCTAACCACTGCATGGGTCTTCCTGCTATTATTTCAAAGAGACAGAGTGTGGACATTTTCCAGAACCAGTGGGAGATCCTTGGCCAAGAAAGGTTAAAAGCTTCTGTTAGCTTTGCCAATTGAGTTTTTATTGTATCATTAGTGCATTCCATCAGCCCAGAGGACTAGGGGTGACACACACAATGGAAATGTTGGGACATAGGCAAAAACGTTACAAATGGA-CCAATTACCTGACCAATGAAGTGTATTCCTCAGTTGCTATGGAATTCAGATGGCAATCCCCATG i papAnu2.chr1 C 0 C 0 s chlSab2.chr20_KE148049v1_random 189617 301 + 1557941 tcataagcgccttcatctaaccactgcatgggtcttcctgttattatttcaaagagacagagtgtggacattttccagaaccagtgggagattcttggccaagaaaggttaaaaacttctgttagctttgccaattgagtttttcttgtatcattaatgcattccatcagcctggaggattaggggtgataggcacaatggaaatgctggtacacagaa-aaaatgttacaaatggatccaattacctgacccatgaagtgtattcctcggttgctatggagttcagatggcaatccccatg i chlSab2.chr20_KE148049v1_random C 0 C 0 s calJac3.chr21 50414975 296 - 50472720 TCACAAGTGCCTTCATCTAACCTCcgcatgggtcttcctgttattatttcaaagggagagagtgc--aagttttccagaactcatgggagatccttggtgaagaaagattaaaaacatctgtttgctttgaccattgggtttttattgtatcattagtgcactccaccggcccagaggattaggggtgataggcatgatgcaaatgctgggacataggc--aaaccttacaaatggatccaaccacctgaccgatgaagtgaattcctcggttgctatggagctcagatggcgccttacg-- i calJac3.chr21 I 144 C 0 a score=1078992.000000 s hg38.chr1_KI270765v1_alt 40769 402 + 185285 aggaatta-ccttttctaatcacaatctacctactacttgggctgtggctcatcggcatggaaatgc-----tcaccccagt--gagcatatacaaattagcaccagaaagtatctgtgaccctgagatggagacagctggataaagtctaactgccgtgtctcgaagggtcccaaaggcaaaatgtccctgtgacccatgaaggggttttccaggattatgtttggg-----acagacagtatggcaagactaaacattttctgcaatcataggcaatgattttcaataccattgctttccccatgccaacattttgtctgaattccaatgagtcagcttatgaagtactgt-aaaagggtaattgaagcctaagggatagatcagtgagtgtatcattgggcccataccatatg s panTro4.chr1_AACZ03149435_random 149783 398 + 173505 aggaatta-ccttttctaatcacattctacctactacttgggctgtggctcatcggcatggaaatgc-----tcaccccagt--gagcatatacaaattagcaccagaaagtatctgtgaccctgagatggagacagctggataaagtctaactgccatgtctcaaagggtcctaaaggcaaaatgtccctgtgacccatgaaggggttttccaggattatgtttggg-----acagaaagtatggcaagactaaacattttctgcaatcataggcaatgattttcaataccattgctttccccatgccaacattttgtctgaattccaatgagtcagcttatgaagtactgt-aaaagggtaattgaagcctaagggatagatc----agtgtatcattgggcccataccatatg i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11225500 399 + 72422247 aggaatta-ccttttctaatcacaatctacctactacttgggctgtggctcactggcatggaaatgc-----tcaccccagt--gagcacacacaaattagcaccagaaagtatctgtgaccctgagatggagacagctggataaagtctaactgccatgtctcaaagggtcctaatgttaaaatgtccctgtgacccatgaaggggctttccagggtgatgcttggg-----acaaagagtaccacaagaataaacattttctgcaatcataggcaatgattttcaataccattgctttccccatgctaacattttatcttatttccaatgagtcagcttatgaagtactgtaaaaagggtagttgaagtctaaggggtggatc----agtgtatcattgggcccataccataag i ponAbe2.chrUn I 316 C 0 s nomLeu3.chr12 56417036 398 - 109391073 aggaatta-cttttgctaatcacaatctacctactacttgggctgtggctccttggcatggaaatgc-----tcaccccagt--gagcacatacaaattagcaccagaaagtatctgtgaccctgagatggagacagctggataaagtctaactgccatgtctcgaagggtcctaaaggcaaaatgtccctgtgacccatgaaggggttttccagggttatgttgggg-----acagacagtatagcaagactaaacattttctgcaatcgtaggcaatgattttcaataccattgctttccccatgctaacattttgtctgaattccaatgagtcagcttatgaagtactgt-aaaagggtaattgaagcctaaggggtggatc----agtgtatcattgggcccatagcatatg i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128129384 406 + 229590362 aggaatga-ttttttctcatcacagcctgcctgctgcttggcctgtggctcatcggcatggaaatgc----tttaccccagtgagagcacaaacaaattaccaccagaaggtatctgtgaccctgagatggagacagctggataaagtctaactgccatgtctcaaagggtgctaaagatacaatgtccctgtgacacatgaagggatcttccaggattatgtttgggacagaacagacagtactacaagaataaaccctttgtgcaatggtagacgatggctttccata-cactgctttccccatgctatcattttgtctgaattccaacaagtcagcttatgaactactttaaaaagggtaattgaatcctaaggggtggatc----gttgtatcattgggcccatatcatatg i rheMac3.chr1 C 0 I 100 s macFas5.chr1 125096472 401 - 227556264 aagaattacctttttctaatcacaatccacttactacttgggctgtggctcatcggcatggaaatgc----ttcaccccagt--gagcacatacaaattagcaccagaaggtatctgtgaccctgagatggagacagctggataaagtctaagtgctatgtctcaaagggtcctaaaggtaaaatgttcctgtgacccatgaaggggtcttccagggttatgtctggg-----acagacagtatagcaaaaataaacattttctgcaatcataggcaatgattttcaataccattgctttccccatgctaacattttgtctgaattccaatgactcagcttataaagtactgtaaaaagggtaattgaagcctaaggggtggatc----agtgtatcattggtcccataccataag i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98604057 400 - 220367699 AGGAATTG-CCTTTTCTAATCACAATCTACCTACTACTTGGCCTGTGGCTCATCGGCATGGAAATGC----TTCACCCCAGT--GAGCACATACAAATTAGCACCAGAAGGTATCTGTGACCCTGAGATGGAGACAGCTGGATAAAGTCTAAGTGCTATGTCTCAAAGGGTCCTAAAGATACAATATCCCTGTGACCTATGAAGGGGTTTTCCAGAGTTATGTTTGGG-----ACAGACAGTACCACAAGAATAAACCTTTTCTGCAATCATAGGCAATGATTTTCAATACCGTTGCTTTCCCCCTGCTAACATTTTGTCTGAATTCCAATGAGTCAGCTTATGAAGTACTGTAAAAAGGGTAATTGAAGCCTAAGGGGTGGATC----AGTGTATCATTGGGCCCATATCATAAG i papAnu2.chr1 C 0 C 0 s chlSab2.chr20_KE148049v1_random 189918 401 + 1557941 aagaattacctttttctaatcacaatccacctactacttgggctgtggctcatcggcatggaaatgc----ttcaccccagt--gagcacctacaaattagcaccagaaggtatctgtgaccctgagatggagacagctggataaagtctaagtgccatgtctcaaagggtcctaaagatacaatatccctgtgacccatgaagggctcttccagggttatgtttggg-----acagacagtatagcaaaaataaacattttctgcaatcataggcaatgattttcaataccattgctttccccatgctaacattttgtctgaattccaatgactctgcttatgaagtactgtaaaaagggcaattgaagcctaaggggtggatc----agtgtatcattgggcccataccataag i chlSab2.chr20_KE148049v1_random C 0 C 0 s calJac3.chr21 50415271 400 - 50472720 agaaacga-ctttttctaattacaatctacctgctacttcggctgtggcccatcagcatggaaatgcttccttcaccccagtgagagcacatatgaattagcaccagaaggtatctataatcccaggacagagagagctggataaa-tttaatggccatgtcttgaagggtcataaaaataaaatgtcccggcgacctatgaagcagt-ttccagagttacgtttggg-----acgaatagtatggctagaataaaccttttgtgcagtcatagatgatgg---tggatgccattgctttcccc-cgctaacattttgcctgaattccaatgagtcagcttatgaactactgtaaagagggtaattgaagcctaaggggtagatc----actgtgtcaccgggcccataccatatg i calJac3.chr21 C 0 C 0 a score=504013.000000 s hg38.chr1_KI270765v1_alt 41171 233 + 185285 actgtttctggaagaaatttgttccctttatccttccagagatccctctcctgcttgggagctcccacttatgc-----------------------ttctttttttttttttgccagagtcttgctctgtcacccaggctggagtgcagtggtgcaatctcacctcactgcaacctccgcctcccaggttcaagcaattctcatgcctctgcctcccaagtagcagggattatagacatgtgtcaccacaccagc s panTro4.chr1_AACZ03149435_random 150181 250 + 173505 actgtttctggaagaaatttgttccctttatccttccagagatccctctcctgcttgggagctcccacttatgctttttttttttttttt------tttttttttttttttttgccagagtcttgctctgtcacccaggctggagtgcagtggtgcaatctcacctcactgcaacctccgcctcccaggttcaagcaattctcatgcctctgcctcccaagtagcagggattatagacatgtgtcaccacaccagc i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11225899 236 + 72422247 cctgtttctggaagaaccttgttccctttatccttccagagatccctctcctgcttgggagctcccacttatgc--------------tt------ctttttttttttttttttctggagtctcactctgttacccaggctggagtacagtggtgcaatctctactcactgcaacctccacctcccaggttcaagcgaatctcatgcctctccctctcaagtagcaggaattgtaggcatgtgtcaccacactagc i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56417434 241 - 109391073 cctgtttctggaagaaacttgttccctttatccttccagagatccctctcctgcttgggaactcccacttatgc---------ttctttt------tttttttttttttttttgccagagtcttgctctgtcgcccaggctggagcgcagtggtgcaatctcacctcactgcaaactccgcctcctaggttcaagcaattctcatgcctctgcctcccaagtagcagggattctagacatgtgtcaccacaccagc i nomLeu3.chr12 C 0 C 0 s macFas5.chr1 125096873 247 - 227556264 cctgtttctggaagaaacttgttccctttatcattccagagatccttctcctacttgggaactcccacttatgc---------tcctttttttttttttttttttttttttttgccagagtctcgctctgtcacccaggctggagtgcagtggcgcaatctctgctcactgcaacctctccctcccaggttcaagcgattctcgtgcctctgtctcataagtagcagggattataggcatgtgtcaccacgccagc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98604457 234 - 220367699 CCTGTTTCTGGAAGAAACTTGTTCCTTTTATCCTTCCAGAGATCCCTCTCCTGCTTGGGAACTCCCActtacgc----------------------tttttttttttttttttgccagagtcttgctctgtcgcccaggctggagtacattggtgcaattttgcctcactgcagcctccgcctcccaaattcaagtaattctcatgcctctgcctcccaagtaacaggGATTATacgcatgtgtcaccacaccagc i papAnu2.chr1 C 0 I 332 s chlSab2.chr20_KE148049v1_random 190319 241 + 1557941 cctttttctggaagaaacttgttccctttatccttccagagatccttctcctacttgggaactcccacttatgc---------tcccttt------tttttttttttttttttgccagagtctcgctctgtcacccaggctagagtgcagtggcgcaatctctgctcactgcaacctctccctcccaggttcaagcgattctcgtgcctctgcctcctaagtagcagggattataggcatgtgtcaccacgccagc i chlSab2.chr20_KE148049v1_random C 0 C 0 s calJac3.chr21 50415671 236 - 50472720 cctgtttctggaaaacacttgtttcctttacctttctggagatcgctttcctgcttgggagctcccagttatgc--------------ct------tttttatattttatttttcaagagtctcactctgtcacccaggctgtagtgcagtggtgcaatcctggctcactacaacctctgcctcccaggttcaagtgattttcatgcctctgcctctcaaatagaagggatgataggtgtgtgtcaccacactagc i calJac3.chr21 C 0 C 0 e rheMac3.chr1 128129790 100 + 229590362 I a score=302912.000000 s hg38.chr1_KI270765v1_alt 41404 144 + 185285 taatttttgtatttttaatagagacaggatttcaccatg-----------ttggccaggctgggc----tcaaactcctg------------------acctcaggtgatccgccagccttggcctcccaaagtgctgggattacaggcatgagccaccatgcccagcccacttgta s panTro4.chr1_AACZ03149435_random 150431 144 + 173505 taatttttgtatttttagtagagacaggatttcaccatg-----------ttggccaggctggtc----tcaaactcctg------------------acctcaggtgatccgccagccttggcctcccaaagtgctgggattacaggcgtgagccaccatgcccagcccacttgta i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11226135 144 + 72422247 taatttttgtatttttagtagagacagggtttcaccatg-----------ttgtccaggctggtc----acaaactcctg------------------acctcaagtgatccaccagcctcggccacccaaaatgctgggattacaggcatgagccaccttgtccagcccacttgta i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56417675 144 - 109391073 taatttttgtagttttagaagagataggatttcaccacg-----------ttggccaggctggtc----tcaaactcctg------------------acctcaggtgatccgccagccttggcctcccaaagtgctgggattacaggtgtgagccaccatgcccagcccacttgta i nomLeu3.chr12 C 0 C 0 s macFas5.chr1 125097120 144 - 227556264 taatttttgtatttttagtaaagacagcatttcaccatg-----------ttggccaggttggtc----tcaaactccgg------------------acctctggtgatctgcccaccttggcctcccaaagtgctgggattacaggcacaagccaccatgcccagcccatttgta i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98605023 155 - 220367699 taatttttgtatttttagtagagacagaattccACTAAAATCCTGGCtgtttggccaggctagtc----tcaaactcctg------------------acctcaggtgatctgccagcctcagcctcccaaagtgctgggattacagggatgagccaccatgcccagcccacttgTA i papAnu2.chr1 I 332 C 0 s chlSab2.chr20_KE148049v1_random 190560 144 + 1557941 taatttttgtatttttagtaaagacagcgtttcaccatg-----------ttggccaggctggtc----tcaaactccgg------------------acctctggtgatctgcccaccttggcctcccaaagtgctgggattacaggcacaagccaccatgcccagcccatttgta i chlSab2.chr20_KE148049v1_random C 0 C 0 s calJac3.chr21 50415907 166 - 50472720 tactgtttgtatttttagtaaagacagggtttcattaca-----------ttggccaggctagtcccaaccaaactcctgacctcaggtgatccacccacctcaggtgatccacccacctcaggctcccaaagtgctggaattacaggcatgaaccaccgtgcccagcccacttgcg i calJac3.chr21 C 0 C 0 e rheMac3.chr1 128129790 100 + 229590362 I a score=1731435.000000 s hg38.chr1_KI270765v1_alt 41548 640 + 185285 cttctaatgaagtcttcaatgggtcataagtcagcaaggtcatttcgaggagttctgtgtctgatgtcaccttcagagctgcattcttagctgcagcatcagcaaaatgattgtcct------------------------tgctctccagaatgtctaattttgaatgaacacgaattttgatgatggcc-aaaatttgggtcttcaaattgcttctaagaggtcagagatttattggtcatttttgatggcttgacctgatgaaatcagatacctatgttgcttctaaagcattccaaaatcatcacctactccaaatgcatctctgctcccagtgtaaatgttaggctgaggg-gaaggattgattgagcccagaagttcattcaggtccagcctggaaaacacagcaagatgtcctctctac-------aaaaaaaaaaaatcaaagaattagctgggcattgtggcatgcacctgtggtcccagctactcgggaggctaaggtgg-gaggattgctagagctgaga-ggttgaggatgtggtgggccatgatggagccactgcactccagcctgggtgacaaagtgaggccctgtctcaaTCAAT-----------------CA---ATCAATAAATCTTAACCACTTAAAATACCAATGACAGATTTGCTTGGCCTTTTAAGTgcattg s panTro4.chr1_AACZ03149435_random 150575 635 + 173505 cttctaatgaagtcttcaatgggtcataagtcagcaaggtcatttcgagaagttctgtgtctgatgtcaccttcagagctgcattcttagctgcagcatcagcaaaatgattgtcct------------------------tgctctccagaatatctaattttgaatgaacacgaattttgatgatggcc-aaaatttgggtcttcaaattgcttctaagaggtcagagatttattggtcatttttgatggcttgacctgatgaaatcagatacctatgttgcttctaaagcattccaaaatcatcacctactccaaatgcatctctgctcccagtgtaaatgttaggctgaggt----ggattgattgagcccaggagttcattcaggtccagcctggaaaacacagcaagatgtcctctctgc---------aaaaaaaaaatcaaagaattagctgggcattgtggcatgcacctgtggtcccagctactcgggaggctgaggtgg-gaggattgctagagctgaga-ggttgaggatgtggtgggccatgatggagccactgcactccagcctgggtgacagagtgaggccctgtctcaaTCAAT-----------------CA---ATAAATAAATCTTAACCACTTAAAATACCAATGACAGATTTGCTTGGCCTTTTAAGTGCATTG i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11226279 649 + 72422247 cttctaatgaagtcttcaatgggtcataagtcagcaaggtcatttcgagaagttctgtgtctgatgccaccttcagagctgcattcttagctgcagcatcaggaaaatgattgtcct------------------------tgctttccggaatatctagttttgaatgaccaggaattttgataatggccgaagatttgggttttcaaattgcttctaagaggtcagagatttattaggcatttttcatggcttgacctgatgaaatcagatatctctgttgcttctaaagcattccaaaatcatcacctactccaaatgcatctctgccatcagtgtaaatgttaggctgaggtggaaggattgattgagcccaggagttcattcaggtccagcctggaaagcacagcgagatgtcctctctacaaaaaaaaaaaaaaaaaaatcaaagaattagctgggcattgtggcatgcacctgtggtcccagctactcgggaggctgaggtgg-gaggattgctagagctgaga-ggttgaggatgtggtgggccatgatggagccactgcactccagcctgggtgacagagtgagaccctgtctcaaTCAAT-----------------CA---ATAAAGAAATCTCAACCATTTAAAATATCAATGACAGATTTATTTGGCCTTTTAAGTGCATTG i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56417819 636 - 109391073 cttctaatgaagtcttcaatggctcataagtcagcaaggtcatttcgagaagttctgtgtctgatgtcaccttcagagctgcattcttagctgcagcatcagcaaaatgattgtcct------------------------tgctctccagaatatctaattttgaatgaccaggaattttgatgatggcc-aaaatttgggtcttcgaattgcttctaagaggtcagagatttattggtcatttttgatggcttgacctgatgaaatcagatacctatgttgcttctaaagcattccaaaatcgtcacccactccaaatgcatctctgccatcagtgtaaatgttagggtgaggtggaaggattgattgagcccaggagttcattcaggtccagcctggaaaacacagcaagatgtcctctctac------------aaaaaaatcaaagaattagctgggcattgtggcatgcacctgtggtcccagctactcgggaggctgaggtgg-gaggattactagagctgaga-ggttgaggatgtggtgggccatgatggagccactgcactccaacctgggtgagagagtgagaccctgtcgcaaTCAAT-----------------CA---ATAAATAAATCTCAACCATTTAAAATATCAATGACAGATTTGCTTGGCCTTTTAAGTgcattg i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128129890 651 + 229590362 cttctaataaggttttcaatgagccataagtcagcagggtcatttagagaagttctgtgtccgatgtcaccttcagagccgcattcttagctgccgcatcagcaaaacggttgtcct------------------------tgctctccggagcatctaattttgaatgaccagtaattttgatgatggccaaatatttgggttttcaaattgcttctaagaggtaagagacttactggtaatttttgttgggtggacctagtgaaataagaaatctatgttgcttctaaagcattcccaaatcatcaccttctccaaatgcaactctgtggtcagtgtaaatgttACgctgacgcgggaggattgattgagcccaggagatc----aagaccagcctggaaaccacagtgagtcc-cctctctat-------------aaacagtcaaagaattagccgggtgcggtggcatgcacctgtagtctcatctagtt-gtaggctcaagtgg-gagaactgctacagcccaggcgtttgagactgtggtgggccatgatggagccactgcactccagcatgggtgacagagtgaaatcctgtctcaataaatacatacatgcatacatacatacataAATTATTTTCAGCCATTTAAAATATCAATGACAGATTTGTTTGGCCTTTTAAGTGCATTG i rheMac3.chr1 I 100 C 0 s macFas5.chr1 125097264 661 - 227556264 cttctaatgaagtcttcaatgggtcataagtcagcaaggtcatttcgagaagttctgtgtctgatgccaccttcagagctgcattcttagctgcagcatcagcaaaatgattgtccttgctctctggaatatctaattttgtgctctctggaatatctaattttgaatgaccaggaattttaatgatggccaaagattcaggttttcaaattgcttctaaaaggtcagagacttattggtgatttttgatgacttgacctgatgaaatcagatatctatgttgcttctaaaggattccaaaatcatcacctactccaaatgcatctctgctgccagtgtaaatgttaggctgaggcgggagaattgattgatcccaggagttcattgaggtccagcctggaaaacacagcgagacctcctctctat------------gaaaaaatcaaagaattggctgggcgttgtggcatgcacctgtggtcccagctacttgggaggctgaggtgg-gaggattgctggagctgaga-gattgaggctgtggtgggccatgatggagccactgcactccagcctgggtgacagagtgagtacctgtctcaaTCAAT-----------------CA---ATCAATAAATCTCAACCATTTAAAATAACAATGACAGATTTGCTTGACCTTTTAAGTgcattg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98605178 635 - 220367699 CTTCTAATGAAATCTTCAGTGAGTCATAAGTCAGCAGGGTCATTTCGAGAAGTTCTGAGTCTGATGCCACCTTCAGAGCCGCATTCTTAGCTTCAGCATCAGCAAAATGATTGTCCT------------------------TGCTCTCCGGAATATCTAATTTTGAATGACCAGTCATTTTGATGATGGCCAAAGATTTGGGTTTTCAAATTGCTTGTAAGAGGTCAGAGATTTATTGGTCATTTTTGATGGTTTGACCTGATGAAATCAGATATCTATGTCGCTTCTAAAGCATTCCAAAATCATCACCTACTCCAAATGCATCTCTGCCATCAGTGTAAATGttaggctgaagtgggaggattgattgagcccaggagttcattcaggtccagcctggaaaacacagtgagatctcctctctac-----------aaaaaaaatcaaagaatcagctgggtgttgtggcatgcacctgtggtcccagctactcgggaggctgagatggttaGGATTGCTAGAGCTGAGA-GGTTGAGGATGTAGTGGGCTatgatggagccattgcactccagcctaggggacagagtgaaaccctgtctcaat---------------------ca---atcaataaatctCAACCATCTAAAATATCAATGACACATTTGTTTGGCCTTTTAAGTGCATTA i papAnu2.chr1 C 0 C 0 s chlSab2.chr20_KE148049v1_random 190704 637 + 1557941 cttctaatgaagtcttcaatgggtcataagtcagcaaggtcatttcgagaagttctgagtctgatgccaccttcagagccgcattcttagctgcagcatcagcaaaatgattgtcct------------------------tgctctccggagtatctaattttgaatgaccaggaattttgatgatggccaaagattcaggttttcaaattgcttctaaaaggtcagagacttattgatgatttttgatgacttgacctgatgaaatcagaaatgtatgttgcttctaaaggattccaaaatcatcacctactccaaatgcatctctgctgccagtgtaaatgttaggctgaggcgggaggactgattgatcccaggagttcattgaggtccagcctggaaaacacagcaagacctcctctctat------------gaaaaaatcaaagaattagctgggcgctgtggcatgcacctgtggtcccagctagtcgggaggctgaggtgg-gaggattgctggagctgaga-gattgaggctgtggtgggccatgatggagccactgcactccagcctgggtgacagagtgagtacctgtttcaaTCAAT-----------------CA---ATAAATAAATCTCAACCATTTAAAATAACAATGACAGATTTGCTTGGCCTTTTAAGTgcattg i chlSab2.chr20_KE148049v1_random C 0 C 0 s calJac3.chr21 50416073 637 - 50472720 cttctaacaaagtcttcaatgggtcataagtcagcaaggtcattttgaggag-tctgtgtctcattttaccttcagaactgga-tcttagctgcagcatcagcaaaatggttgtccg------------------------tgctctctggagtatcgaattttgaatgaccaggaattttgatgatggccaaagattcaggttttcaagttgcttctaagaggacagagacttattggtcatttttgatgggttgacctgatgagatcagaaacctatgttgcttataaagcattccaaaatcgtcgtcttctccaaatgcatctctgcagtcaatgtaaatTGTaggtggaggtgggaggattgattgagcccaggagttcactcgagaccatcctgaaaa--acagtgagacgtcctctctac----aaaaaaaaataataatcaaagaataagctgggtgttgtggcatgcacatgtggtcccaggtaactgggaggctgaggtgg-gaggattgccagagctgaga-gtttgaggctgtgctgggccatgatggagccgctgcactccagcctgggtgacagagtgagaccctgtctcaat---------------------aa---aTAAGTACATCTCAACCATTTAAAATATCAATGGCAGATTTATTTGGACTTTAAAGTGCATTG i calJac3.chr21 C 0 I 28853 a score=29288.000000 s hg38.chr1_KI270765v1_alt 42188 11 + 185285 ctgaattctcc s panTro4.chr1_AACZ03149435_random 151210 11 + 173505 CTGAATTCTCC i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11226928 11 + 72422247 CTGAATTCTCC i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56418455 11 - 109391073 ctgaattctcc i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128130541 11 + 229590362 CTGAATTCTCC i rheMac3.chr1 C 0 I 73 s macFas5.chr1 125097925 11 - 227556264 ctgaattctcc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98605813 11 - 220367699 CTGAATTCTCC i papAnu2.chr1 C 0 C 0 s chlSab2.chr20_KE148049v1_random 191341 11 + 1557941 ctgaattctcc i chlSab2.chr20_KE148049v1_random C 0 C 0 e calJac3.chr21 50416710 28853 - 50472720 I a score=979321.000000 s hg38.chr1_KI270765v1_alt 42199 620 + 185285 aatctacatttttgggaacaacctggggaatggcaacatggaagtatttggccaaaatgcagaccctttcattgtctgctttagtctg-tttttaaaaatcctctaaagaattattccaattcgcccttttcaaccatttagtggccctgccttcttacacca-catgtgaattaattgataaaaatcagaatattcgggct-aaaagtttggacaattaagtcaaattttctcccaaaccctataggatcttggagGCTGCTTTAGAATTAG-AAGGGGAAATTGATTTAAATTTCGATCAGGGAAGTCttttttattttttatttatttatttatgtattttgat------acaaagtcttgctctgtcacccaggctggagtgcaatggtgcaatcttggctcactgcaaactccacttcccgagttaaagcgattctcctgcatcagcctcccgagttgctgggattgcagtcatgtatcaccatgaccggctaatttttgtatttttagtatagaccgggtttcaccatgttgtccaggctggtctcgaactcccgacctcgtgatccacctgtctagtcctcccaatgtgctgggattacaggcatgagccactgcgcccggcc s panTro4.chr1_AACZ03149435_random 151221 620 + 173505 AATCTACATTTTTGGGAACAACCTGGGGAATGGCAACATGGAGGCATTTGGCCAAAATGCAGACCCTTTCATTGTCTGCTTTAGTCTG-TTTTTAAAAATCCTCTAAAGAATTATTCCAATTCGCCCTTTTCAACCATTTAGTGGCCCTGCCTTCTTACACCA-CATGTGAATTAATTGATAAAAATCAGAATATTCGGGCT-AAAAGTTTGGATAATTAAGTCAAATTTTCTCCCAAACCCTATAGGATCTTGGAGGCTGCTTTAGAATTAG-AAGGGGAAATTGATTTAAATTTCGATCAGGGAAGTCTTTtttattttttatttatttatttatgtattttgat------acaaagtcttgctctgtcacccaggctggagtgcaatggtgcaatcttggctcactgcaacctccacttcccgagttaaagcgattctcctgcatcagcctcccaagttgctgggattgcagtcatgtaccaccatgaccggctaatttttgtatttttagtatagaccgggtttcaccatgttgtccaggctggtctcgaactcccgacctcgtgatccgcctgtctagtcctcccaatgtgctgggattacaggcatgagccactgcgcccggcc i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11226939 609 + 72422247 AATCTACATATTGGGGAATGACCTGGGTAATGGCAACATGGAGGTATTTGGCCAAAATGCAAACCCTTTCATTGTCTGCTTTAGTCTG-TTTTTAAAAATCCTCTAAATGATTATTCCAATTGGCCCTTTTTAACCATTTAGTGGCCCTGCCTTCTTACACCAGCATGTGAATTAATTGATAAAGATCAGAATATCCAGGCTCAAAAGTTTGGACAACTAAGTCAAATGTTCTCCCAAACCCTATAGGATTTTGGAGGCTGCTTTTGAATTAGAAAGGGAAAATTCATGTAAATTTTGATCAGGGAAGTTGGttttcttttttttt--------------ttttgat------acagagtcttgctctgtcacccaggctggagtgcagtggcacagtctaggctcactgcaacctccacttcccgagttcaacagattctcctgcctcagcctcctgagtagctgggattgaagtcatgtgccaccatgactggctaatttttgtatttttagtatagatggggtttcaccatgttgtccaggctggtctcgaactcctgaccttgtgatccacctgcctagtcctcccaacgtgctgggattacacgcataagccactgcacccagcc i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56418466 613 - 109391073 aatctacatttttgggaacaacctggggaatggcaacgtggaggtatttggccaaaacgcagaccctttcattgtctgctttagtctg-tttttaaaaatcctctaaagaattactccaatttgcccttttcgaccatttagtggccctgccttcttacgcca-catgtgaattaattgataaaaagcagaatattcgggctcaaaagtttggacaactaagtcaaattttctcccaaaccctgtgggatcttggagGCTGCTTTAGAATTAGAAGGGGAAAATTTATTTAAATTTCGATCGGGGAAGTCttttttactttttatttattta--------ttttgac------acaaagtcttgctctgtcacccaggctggagtgcaacggcgcaatcttggctcactgcaacctccacttcccgagttaaagcgattctcctgcatcagcctcccgagttgct-ggattgcagtcatgtaccaccatgaccggctaatttttgtatttttagtaaagatctggtttcaccatgttgtccaggctggtctcgaactcctgaccttgtgacccgcctgcctagtccttccaacgtgctgggattacaggcatgagccactgcgactggcc i nomLeu3.chr12 C 0 C 0 s macFas5.chr1 125097936 627 - 227556264 aatctatatttttaggaacgagctggggaatagcaacatggaggtatttagccaaaatgcagaccctttcattgtctgcttcagtctgttttttttaaatcctctaaaggattatcccaatttgcccttttcaaccatttagtggccctgccttcttacaccagcatgtgaattaattgataaagatcagaatgtccaggctcaaaagtttggacaattaagtcaaatttcctcccaaacactctaggatcttagaggCTGCTTTAGAATTAGAAGGGGAAAATTTATTTAAATTTCGATCAGAGAAGtctttttttctttttttcttttctttctt---tttcttttttttgatagagtcttgttctgtaacccaggctagagtccaatggcacaatctcggctcactgcaacctccacttcccgagttcaaatgattctcttgcctcagcatcctgagcagctgggattacagtcatgtgccaccatgaccggctaatttttgtgtttttagtatagacagggtttcaccatgttgtccaggctggtcttgaactcctgacctcgtgatctgcccacctagtcctccgaaagtgctgggattacaagcatgagccaccgtgcccagcc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98605824 600 - 220367699 AGTCTACATTTTTCAGAACAACCTGGGGAATGACATCATGGAGGTATTTGGCCAAAATGCAGACCCTTTCATTGTCTGCTtcagtctg-tttttaaaaatcctctaaaGGATTGTTCCAATTCGCCCTTTTCAACCATTTTGTGGCCCTGCCTTCTTACACCAGCATGTGAATTAAttgataaaaatcagaatatctgggCTCAAAAGTTTGAACAATTAAGTCAAATTTTCTCCCCAACCCTATAGGATCTTGGAGGTTGCTTTAGAATTAGAAggggaaattttatttaaatttcgatcggggaagtcttttttttttttttttttttgat--------------------acagagtcttgctctgcca-ccaggctggatt--------gcaatctcggctcactgcaacctccactttctgagttcaagcaattctcctgcctcagcctcctgagtagctgggattgcagtcatgtgccaccatgaccggctaatttttatatttttagtatagacagggtttcactatgttgtccaggctggtctcaaactcctgacctcgtgatccacctgcctagtcctcctaaagtgccaggaatacaggcatgagccaccgtgcctggcc i papAnu2.chr1 C 0 C 0 s chlSab2.chr20_KE148049v1_random 191352 621 + 1557941 aatctatatttttaggaacgagcaggggaatagcaacatggaggtatttagccaaaatgcagaccctttcattgtctgcttcagtctgttttttaaaaatcctctaaagaattatcccaatttgcccttttcaaccatttagtggccctgccttcttacaccagcatgtgaattaattgataaagatcagaatgtccaggctcaaaagtttggacaattaagtcaaatttcctcccaaacactgcaggatcttggagGCTGCTTTAGAATTAGAAGGGGAAAATTTATTTAAATTTCGATCAGAGAAGTCTttttttcttttctttctttttctttt---ttttgat------acagagtcttgttctgtaacccaggctggagtccaatggcgcaatcagggctcactgcaacctccacttcccgagttcaagtgattctcttgcctcagcatcctgagtagctgggattacagtcatgtgccaccatgccaggctaatttttgtgtttttagtatagacagggtttcaccatgttgtccaggctggtcttgaactcctgacctcgtgatctgcccacctagtcctccaaaagtgttgggattacaaacatgagccaccgtgcccagcc i chlSab2.chr20_KE148049v1_random C 0 C 0 e calJac3.chr21 50416710 28853 - 50472720 I e rheMac3.chr1 128130552 73 + 229590362 I a score=1219.000000 s hg38.chr1_KI270765v1_alt 42819 1 + 185285 C s panTro4.chr1_AACZ03149435_random 151841 1 + 173505 C i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11227548 1 + 72422247 C i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56419079 1 - 109391073 C i nomLeu3.chr12 C 0 C 0 s macFas5.chr1 125098563 1 - 227556264 T i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98606424 1 - 220367699 c i papAnu2.chr1 C 0 C 0 s chlSab2.chr20_KE148049v1_random 191973 1 + 1557941 T i chlSab2.chr20_KE148049v1_random C 0 C 0 s calJac3.chr21 50445563 1 - 50472720 C i calJac3.chr21 I 28853 C 0 e rheMac3.chr1 128130552 73 + 229590362 I a score=1026276.000000 s hg38.chr1_KI270765v1_alt 42820 353 + 185285 AGGGAAGTC-TTTTATAATATTCTTAATTCACATTTTGGTGAAGCAGTATACAGAATGGTAGGCTCCCTTCTTCCTGTGGAAGCCCCTACCTTGAAAGGGGCTGTCAGAACAGAAGTTTCAGGGGAGGGGCCAGAGCCCTGGGGACTTTCCTCAGGTGATGGTGATggaagaagaggcaaggcagaaccggagggctcaggtaagggagactatgcaggtgcaggggcaggaggagaaggagcagttggaggcgaaagagacaaagcctcctcaatatttctcaattcagaaaacgtgtcagtttacctccttcagcttacttcctcactggaggcaattttcac---agttctttt s panTro4.chr1_AACZ03149435_random 151842 350 + 173505 AGGGAAGTC-TTTTATAATATTCTTAATTCACATTTTGGTGAAGCAGTATACAGAATGGTAGGCTCCCCTCTTCCTGTGGG---TTTTACCTTGAAAGGGGCTGTCAGAACAGAAGTTTCAGGGGAGGGGCCAGAACCCTGGGGACTTTCCTCAGGTGATGGTGATGGAAGAAGAGGCAAGGCAGGACCGGAGGGCTCAGGTAAGGGAGACTATGCTGGTGCAGGGGCAGGAGGAGAAGGAGCAGTTGGAGGCGAAAGAGACAAAGCCTCCTCAATATTTCTCAATTCAGAAAACGTGTCAGTTTACCTCCTTCAGCTTACTTCCTCACTGgaggcaattttcgc---agttctttt i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11227549 351 + 72422247 AGGGAAGTCTTTTTATAATATTCTTAATTCACATTTTGGTGAAGCAGTATACAGAATGATAGGCTCCCCTCTTCCTGTGGG---TTTTACCTTGAAAGGGGCTGTCAGAACAGAAGTTTCAGGGAAGGGGCCAGAGCCCTGGGGACTTCCCTCAGGTGATGGTGATGGAAGAACAGGCAAGGCAGGACCGGAGGGCTCAGGTAAGGGAGACTATGCAGATGCAGGGGCAAGAGGAGAAGGAGCAGTTGGAGGTGAAAGGGACAAAGCCTCCTCAATATTTCTCAATTCAGAAAACGTGTCAGATGACCTCCCTCAGCTTACTTCCTCACTGGAGGCAATTTTCTC---AGTTCCTTT i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56419080 350 - 109391073 AGGGAAGTC-TTTTATAATATTCTTAATTCACATTTTGGTGAAGCAGTATACAGAATGGTAGGCTCCCCTCTTCCTGTGGG---TTTTACCTTGAAAGGAGCTGTCAGAACAGAAGTTTCAGGGAAGGGGCCAGAGCCCTGGGGACTTTCCTCAGGTGATAGTGAGggaagaagaggcaaggcaggacgggagggctcaggtaagggagactatgcaggtgcaggggcaggaggaggaggagcagttggaggcgaaagagacaaagcctcctcgatatttctcaattcagaaaacgtgtcactttacctccttcagcttacttcctcactggaggcaattttctc---agttctttt i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128130625 349 + 229590362 AGGGAAGTC-TTTTACAATATTCTTAATTCACATTTTGGTGAAGCGGTATACACAATGGTAGGCTCCCCTCTTCCTGTGGG---TTTTACCATGAAAGCGACTGTCAGAACAGAAGTTTCAGGGAAGAGGCCAGAGCCCTGGGGACTTTCCTCAGGTGATGGTGATGGAAGAAGAGGCAAGGCAGGACAGGAGGACTCAGGTAAGAAAGACTCTGCAGGTGCAGGGGCAGGAGGAGAAGGAGCAGTTGGAGGTGAAAGAGACAAAGCCTCCTCAATATTTCTCAATTCAGAAAAAGCGTCAGATATCC----CCAGTTTACATCCTCAATGgaggcaattttctcagaagttctttt i rheMac3.chr1 I 73 C 0 s macFas5.chr1 125098564 341 - 227556264 AGGGAAGTC-TTTTATGATATTCTTAATTCACATTTT------ACAGTATACAGAATGGTAGGCTCCCCTCTTCCTGTGGG---TTTTACCTTGAAAGCG---GTCAGAACAGAAGTTTCAAGGAAGGGGCCAGAGCGCTGGGGACTTTCCTCAGGTGATGGTGATggaagaagaggcaaggcaggaaaggagggcttaggtaagggagactatgcaggtgcaggggcaggaggagaaggagcagttgggggtgaaagagacaaagcctcctcaataattctcaattcagaaaacatgtcagttaacctccttcagcttacttcctcactggaggcaattttctc---agttctttt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98606425 350 - 220367699 agggaaGTC-TTTTATGATATTCTTAATTCACATTTTGGTGAAGCGGTATACACAATGGTAGGCTCCCCTCTTCCTGTGGG---TTTTACCTTGAAAGCGGCTGTCAGAACGGAAGTTTCAGGGAAGAGGCCAGAGCCCTGGGGACTTTCCTCAGGTGATGGTGATGGAAGAAGAGGCAAGGCAGGACTGGAGGACTCAGGTAAGGGAGACTATGCAGGTgcaggggcaggaggagaaggagcagtTGGAGGCGAAAGAGACAAAGTCTCCTCAATATTTCTCAATTCAGAAAACATGTCAGTTAACCTCCTTCAGCTTACTTCCTCAGTGGAGGCAATTTTCTC---AGTTCTTTT i papAnu2.chr1 C 0 I 312 s chlSab2.chr20_KE148049v1_random 191974 350 + 1557941 AGGGAAGTC-TTTTATGATATTCTTAATTCACATTTAGGTGAAGCAGTATACAGAATGGTAGGCTCCCCTCTTCCTGTGGG---TTTTATCTTGAAAGCGGCTGTCAGAACAGAAGTTTCAAGGAAGGGGCCAGAGCGCTGGGGACTTTCCTCAGGTGATGGTGATggaagaataggcaaggcaggacaggaaggctcaggtaagggagactatgcaggtgcaggggcaggaggagaaggagcagttgggggtgaaagagacaaagcctcctcaatatttatcaattcagaaaacatgtcagtttacctccttcagcttacttcctcactggaggcaattttctc---agttctttt i chlSab2.chr20_KE148049v1_random C 0 C 0 s calJac3.chr21 50445564 347 - 50472720 AGGGAAGTC-TTATATAATAATTTTAATTCACATAATGGTAAAGCAGAATACACAGTGGTAGGCTTCCCTCTTCCTGTGGG---TGTTACCTTGAAAGGGGCTGTCAGAACAGAAGTTTCAGGGAAGGGGCCAGAGCCCTGGGGACTCTCCGCAGGTGATGGTGATGGAAGGAGAGGCAAGGCAGGACAGGAGGGCTCAGGTAAGGGAGACTATGCAGGTGCAGGGGCTGGAGGAGAAGGAGCAGATGGAGGCGAAAGAGACAAAGCCTCCTCAGTATTTCTCAATTCAGAAAAA--GTCTGCTGGCCTCCTTCAGTTTAC-TCCTCAATGgaggcaattttctc---agttctttt i calJac3.chr21 C 0 C 0 a score=178022.000000 s hg38.chr1_KI270765v1_alt 43173 61 + 185285 agaaatttctaggtattattggaagtaagtctcccatttaatt----tggttctaaaaccaaatt s panTro4.chr1_AACZ03149435_random 152192 61 + 173505 agaaatttctaggtattattggaagtaagtctcccatttaatt----tggttcttaaaccaaatt i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11227900 59 + 72422247 AGAAATTTCT--Gtatcattggaattaagtctcccatttaatt----tggttctaaaaccaaatt i ponAbe2.chrUn C 0 I 302 s nomLeu3.chr12 56419430 61 - 109391073 agaaatttctaggtatcattggaagtaagtctcccatttaatt----tggttctaaaaccaaatt i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128130974 65 + 229590362 agaaagttctaggtatcattggaagtaagtctcccatttaatttgcctggttctaacaccaaatt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 125098905 61 - 227556264 agaaatttctaggtattattggaagtaagtctcccatttaatt----tggttctaaaaccaaatt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98607087 61 - 220367699 agaagtttctaggTATCATTGGAAGTAAGTCTCCCATTTAATT----TGGTTCTAAAACCAAATT i papAnu2.chr1 I 312 C 0 s chlSab2.chr20_KE148049v1_random 192324 61 + 1557941 agaaatttctaggtattattggaagtaagtctcccatttaatt----tggttctaaaaccaaatt i chlSab2.chr20_KE148049v1_random C 0 C 0 s calJac3.chr21 50445911 65 - 50472720 agaaatttctaggtatcattggaagtaagtctcccatttcatttgtctggttctaaaaccatttt i calJac3.chr21 C 0 C 0 a score=6552.000000 s hg38.chr1_KI270765v1_alt 43234 2 + 185285 tt s panTro4.chr1_AACZ03149435_random 152253 2 + 173505 tt i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11228261 2 + 72422247 tt i ponAbe2.chrUn I 302 C 0 s nomLeu3.chr12 56419491 2 - 109391073 tt i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128131039 2 + 229590362 tt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 125098966 2 - 227556264 tt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98607148 2 - 220367699 TT i papAnu2.chr1 C 0 C 0 s chlSab2.chr20_KE148049v1_random 192385 2 + 1557941 tt i chlSab2.chr20_KE148049v1_random C 0 C 0 s calJac3.chr21 50445976 2 - 50472720 tt i calJac3.chr21 C 0 I 289 a score=2548.000000 s hg38.chr1_KI270765v1_alt 43236 1 + 185285 t s panTro4.chr1_AACZ03149435_random 152255 1 + 173505 t i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11228263 1 + 72422247 t i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56419493 1 - 109391073 t i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128131041 1 + 229590362 t i rheMac3.chr1 C 0 C 0 s macFas5.chr1 125098968 1 - 227556264 t i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98607150 1 - 220367699 T i papAnu2.chr1 C 0 C 0 s chlSab2.chr20_KE148049v1_random 192387 1 + 1557941 t i chlSab2.chr20_KE148049v1_random C 0 C 0 e calJac3.chr21 50445978 289 - 50472720 I a score=92129.000000 s hg38.chr1_KI270765v1_alt 43237 31 + 185285 ccaattgtgcacactaataaattattttaag s panTro4.chr1_AACZ03149435_random 152256 31 + 173505 ccaattatgcacactaataaattattttaag i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11228264 31 + 72422247 ccaattgtgcacactaatacattattttaag i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56419494 31 - 109391073 ccaattgtgcacactaataaattattttaag i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128131042 31 + 229590362 ccaattgtgtgccctaataaattattttaag i rheMac3.chr1 C 0 I 319 s macFas5.chr1 125098969 31 - 227556264 ccaattgtgcacactaataaattattttaag i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98607151 31 - 220367699 CCAATTGTGCAcactaataaattattttaag i papAnu2.chr1 C 0 C 0 s chlSab2.chr20_KE148049v1_random 192388 31 + 1557941 ccaattgtgtacactaataaattattttaaa i chlSab2.chr20_KE148049v1_random C 0 C 0 s calJac3.chr21 50446267 31 - 50472720 ctaattgtccacactaataaattattttagg i calJac3.chr21 I 289 C 0 a score=787584.000000 s hg38.chr1_KI270765v1_alt 43268 280 + 185285 catttc-aaaatatccccattttcttca--ttctgcttatcagttttcctggttaggtggatccagtttcttggatatttacaagaggacgcttcataagtgctatacataaacccagctgatgtttctaaaggtggttgtttcttcgcagtgtgct-aaattttgaagcttgatttcccataattcaggagcttttc--agatgaccaaggcctgtgatgtgttttgggtcacagtgtggtgcttatgaagtcactcctacagataacaccGGAGTTGTGTATCG s panTro4.chr1_AACZ03149435_random 152287 280 + 173505 catttc-aaaatatccccattttcttca--ttctgcttatgagttttcctggttaggtgggtccagtttcttggatatttacaagaggacacttcataagtgttatacataaacccagctgatgtttctaaaggtggttgtttcttcacagtgtgct-aaattttgaagcttgatttcccataattcaggagcttttc--agatgaccaaggcctgtgatgtgttttgggtcacagtgtggtgcttATGAAGTCACTCCGACAGATAACACCGGAGTTGTGTATCG i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11228295 282 + 72422247 catttc-aacagatcccaattttcttcattttctgcttatgacttttcctggttaggtgggtccagtttcttggatatttacaagaggatgcttcataaatggtatacataaacccagctggtgtttctaaaggtggtagtttcttcacagtgtgct-gaattttgaatcttgatttcccataattcaggagcttttc--agatgaccaaagcctgcgatgtgttttggGTCACAGGGCGGTGCTTATGCAGTCACTCCGACAGATAACACCGGCATTGTGTATCA i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56419525 280 - 109391073 catttc-aaaagatccccattttcttca--ttctgcttatgagttttcctggttaggtgggtccagtttcttggatatttacaagaggatgcttcgtaagtgttatacataaacccagctggtgtttctaaaggtggttgtttcttcacagtgagct-aaattttgaagcttgatttcccataattcaggagcttttc--agatgaccaaggcctgcgatgtgttttgggtcacagtgtggtgcttatgaagtcactcctacagataacaccGGAGTTGTGTATCG i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128131392 283 + 229590362 catttc-aaaagatccccattttctcca--ttcgacttacaagtttttctggttacatgggtcgggtttctcggatatttacaagtggatgcttcataagtgttatacagaaacccagctggtggttctaaaggcgtttgtttcttcaaagtgtgctcagattttgaagcttgatttcccataatttaggagctttgcaaagatgaccaagGCCTGCAATGTGATTTGGGTCACAGTGCGATGCTTATGAAGTCACTCCTACAGATAACACCGGAGTTGTGTATCG i rheMac3.chr1 I 319 C 0 s macFas5.chr1 125099000 280 - 227556264 catttc-aaaagatccccattttcttca--ttctccttatgacttttcctggttaggtgggtccagtttcttggacatttacaagaggatgcctcataagtgttatacataaacccagctggtgtatctaaaggcgtttgcttcttcacagtgtgct-aaattttgaagcttcatttcccataattcaggagcttttc--agatgaccaaggcctgcaatgtgatttgggtcacggtgcggtgcttatgaagtcactcctacagataacaccGGAGTTGTGTATGG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98607182 280 - 220367699 catttc-aAAAGATCCCCATTTCCTTCA--TTCTGCTTATGACTTTTCCTGGTTAGGTGGGTCCAGGTTCTTGGACATTTACAAGAGGATGCCTCGTAAGTGTTATACATAAACCCAGCTGGTGTTTCTAAAGGTGTTTGTTTCTTCACAGTGTGCT-AAATTTTGAAGCTTCATTTCCCATAATTCAGGAGCTTTTC--AGATGACCAAGGCCTGCAATGTGATTTGGGTCAGAGTGCGGTGCTTATGAAGTCCCTCCTACAGATAACACCGGAATTGTGTATCG i papAnu2.chr1 C 0 I 1085 s chlSab2.chr20_KE148049v1_random 192419 275 + 1557941 catttc-aaaagatccccattttcttca--ttctccttatgacttttcctggttaggtgggtccaatttcttggacatttacaagaggatgcctc----gtgttatacataaacccagctggtgtttctaaaggcgtttgtttcttcacagtgtgct-aaattttgaagc-tgatttcccataattcaggagcttttc--agatgaccaaggcctgcaatgtgatttgggtcacagtgtggtgcttatgaagtcactcctacagataacaccGGAGTTGTGTATCG i chlSab2.chr20_KE148049v1_random C 0 C 0 s calJac3.chr21 50446298 283 - 50472720 catttcaaaaagatccccattttctcca--ttctgctcatgactttttctggttaggcgaatccagtttcttggatatttacaagaggatgcttcataagtgttatacataaacccaactggtgtttctaaaggtggttgttttttcacggtgtgctcagaatttgaagcttgatttcccgtaattca-gagcttttcaaagatgaccaaggcccgagatgtgttttgggtcacagtgtgttgcttATGAAGTCACTCCTACAGATGTCACCCGAGTCATTTATCA i calJac3.chr21 C 0 C 0 a score=354683.000000 s hg38.chr1_KI270765v1_alt 43548 116 + 185285 CTGTCTCAGTGGTTCCCACTGTTTCTAACCACCAGGTGGCCACAGAGTGCATGTGCTATGAGGGACCCGTCCGACATATACCCTCCCAGAAGAGCAGGAAAGGGGGTTCATAAAGA s panTro4.chr1_AACZ03149435_random 152567 116 + 173505 CTGTCTCAGTGGTTCCCACTGTTTCTAACCACCAGGTGGCCACAGAGTGCATGTGCTATGAGGGACCCGTCCGACATATACCCTCCCAGAAGAGCAGGAAAGGGGGTTCATAAAGA i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11228577 116 + 72422247 CTGTCTCAGTGGTTCCCACTGTTTCTAACCACCAGGTGGCCACAGAGTGCATGTGCTATGGGGGACTCATCCCACTTACATCCTCCCAGAAGAGCAGGAAAGGGGGTTGATAAAGC i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56419805 116 - 109391073 CTGTCTCAGTGGTTCCCACTGTTTCTAACCACCAGGTGGCCAGAGAGTTCATGTGCTATGGGGGACTCGTCCCACATATACCCTCCCAGAAGAGCAGGAAAGGGGGTTCATAAAGA i nomLeu3.chr12 C 0 I 333 s rheMac3.chr1 128131675 116 + 229590362 CTGTCTCAGTGGTTTCCACTGTTTCTAACCACCAGGTGGCCACAGAGTGCATGTGCTCTGGGGGACCCGTCTCACATATACTCTCCCAGAAGAGCAGGAAAGGGGGTTCATAAAGA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 125099280 116 - 227556264 CTGTCTCAGTGGTTCCCACTGTTTCTAACCACTAGGTGGCCACAGAGTGTATGTGCTATGGGGGACCCGTCCCACATATACCCTCCCAGAAGAGCAGGAAACAGGGTTCATAAAGA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98608547 116 - 220367699 CTGTCTCAGTGGTTCCCACTGTTTCTAAACACCAGGTGGCCACAGAGTTCATGCGCTATGGGGGACTCGTCCCACATACACCCTCCCAGAAGAGCAGGAAACAGGGTTCATAAAGA i papAnu2.chr1 I 1085 C 0 s chlSab2.chr20_KE148049v1_random 192694 116 + 1557941 CTGTCTCAGTGGTTCCCACTGTTTCTAACCACCAGGTGGCCACAGAGTGTATGTGCTATGGGGGACCCGTCTCACATATACCCTCCCGGAAGAGCAGGGAAGGGGGTTCATAAAGA i chlSab2.chr20_KE148049v1_random C 0 C 0 s calJac3.chr21 50446581 116 - 50472720 CTCTCTCAGTGGCTCCCACTGTTTCTAACCACCAGGTGGCCACAGAGTGCATATGCTATGGGGGACCCGTCCCACATATACCATCCCAGAAGAGCAGGAAAGGGGGTTCGTAAAGA i calJac3.chr21 C 0 C 0 a score=468751.000000 s hg38.chr1_KI270765v1_alt 43664 179 + 185285 TGTTCTTCTGATGGGGAGTGTCCTATGAGG-CCACCTTCACATGGTGAGTAATGACCCCGACACCTCTGCAACATCCCCGATCACTTGGAGCACCTGAATGGATTGGCGGAAGCAGATCACTTCTTTTCTT-CAGGGCAGGGGAATGCACCTCCATGCGCTTTCCAGTTAAGAACTAACAG s panTro4.chr1_AACZ03149435_random 152683 179 + 173505 TGTTCTTCTGATGGGGAGTGTCCTATAAGG-CCACCTTCACATGGTGAGTAATGACCTCGACACCTCTGCAACATCCCTGATCACTTGGAGCACCTGAATGGATTGGCGGAAGCAGATCACTTCTTTTCTT-CAGGGCAGGGGAATGCACCTCCATGCACTTTCCAGTTAAGAACTAACAG i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11228693 179 + 72422247 TGTTCTTCTGATGGGGAGTGTCCTACAAGG-CCACCTTCACATGGTGAGTAATGACCCTGACACCTCTACAATGTCCTCGGTCACTTGGAGCACCTGAATGGGTCAGCGGGAGCAGATCACTTCTTTTCTT-CAGGGCAGGGGAACACACCTCGGTGCACTTTCCAGTTAAGAACTAACAG i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56420254 169 - 109391073 TGTTCTTCTGATGGGGAGTGTCCTATGAGG-CCACCTTCACATGGTGAGTAATGACCCTGACACCTCTGCAA----------CACTCGGAGCACCTGAATGGATCAGCAGGAGCACATCACTTCTTTTCTT-TGGGGCAGGGGAACGCACCTCCATGCACTTTCCAGTTAAGAACTAACAG i nomLeu3.chr12 I 333 C 0 s rheMac3.chr1 128131791 180 + 229590362 TGTTCTTCTGAAGGGAAATGCTCTATGAGG-CCGCCTTCACATGGTGAGTAGTGATCGTGACACCTCTGCAGCATCCCTGGTCACTTGGAGCACCTGAATGGGTCAGCGGAAGCAGATCACTTCTTTTCTTACAGGGCTGGAGAACACACCTCCATGAATTTTCCAGCCAAGGACTAACAG i rheMac3.chr1 C 0 I 282 s macFas5.chr1 125099396 179 - 227556264 TGTTCTTCTGATGGGGAGTGCCCTATGAGG-CTGCCTTCACATGGTGAGTAATGACCCCGACACCTCTGCAGCGTCCCCGGTCACTTGGAGCACCTGAAGAGGTCAGCGGGAGCAGATCACTTCTTTTCTT-CAGGGCAGGGTAATGCACCTCCGTGTACTTTCCAGTTAAGAACTAACAG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98608663 175 - 220367699 TGTTCTTCTGATGGGGAGTGCCCTATGAGG-CCACCTTCACATGGTGAGTAATGACCCTGACACCTCTGCAGCATCCCCGGTCACTTGGAGCACCTGAACGGGTCAGCAGAAGCAGATCACTTC-TTTCTT-CAGGGCAG---AACGCACCTCCATGCACTTTCCAGTTAAGAACTAACAG i papAnu2.chr1 C 0 C 0 s chlSab2.chr20_KE148049v1_random 192810 179 + 1557941 TGTTCTTCTGATGGGGAGTGCCCTATGAGG-CTGCCTTCACATGGTGAGTAATGACCCCGACACCTCTGCAGCGTCCCCGGTCACTTGGAGCACCTGAATGGGTCAGCGGGAGCAGATCACTTCTTTTCTT-CAGGGCAGGGTAATGCACCTCCGTGCACTTTCCAGTTAAGAACTAACAG i chlSab2.chr20_KE148049v1_random C 0 C 0 s calJac3.chr21 50446697 150 - 50472720 TATTCTCCTGATGGAGAGTGTCCCATGAGGCCCGCCTTTACATGGTGAGTAGTGACCCTGTTACCTTTGCAGAGTCCCCAGTCACTTGGAGCACCTGAATGGGTCAGCGGGAGCAGATCACTTCTTATCTT-CAGG------------------------------GTTCAGAACTAACAG i calJac3.chr21 C 0 C 0 a score=242410.000000 s hg38.chr1_KI270765v1_alt 43843 91 + 185285 GAATTAGTCACAAATGAAAAGCTAAGCCCGAATGTTCAAAACAACATGCTACATAAAATGACACCACCAGGGCCTACCTGCCAATACCTTG s panTro4.chr1_AACZ03149435_random 152862 91 + 173505 GAATTAGTCACAAATGAAAAGCTAAGCCTGAATGTTCAAAACAACATGCTACATAAAATGACACCACCAGGGCCTACCTGCCAATACCTTG i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11228872 91 + 72422247 GAATTAGTCACAAATGAAAAGCTAAGTCCGAATGTTCAAAACAACATGTTACATAAAACGAAACTACCAGGGCCTACCTGCTAATATCTTG i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56420423 91 - 109391073 TAACTAGTCACAAATGAAAAGCTAAGTCTGAATGTTCAAAACAACATGCTACATAAAATGAAACCACCAATGCCTACCTGCCAATATGTTG i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128132253 91 + 229590362 GAATTAGTCACAAATGAAAAGCTAAGTTTGAACTTTCATAAAAGCATGCTACAGAAAACAAAACCACCGATGTCTACCTGCCAATACCTTG i rheMac3.chr1 I 282 C 0 s macFas5.chr1 125099575 91 - 227556264 GAACTAGTCACAAATGAAAAGCTAAGTCCCAATGTTCAAAACAACATGCTACATGAAAGGAAACCACCAGTGCCTACCGGCCAATACCTTG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98608838 91 - 220367699 GAATTAGTCACAAATGAAAAGCTAAGTCCCAATGTTCAAAACAACATGCTACATGAAACGAAACCACCAGTGCCTACCGGCCAATACCTTG i papAnu2.chr1 C 0 C 0 s chlSab2.chr20_KE148049v1_random 192989 91 + 1557941 GAATTAGTCACAAATGAAAAGCTAAATCCGAATGTTCAAAACAACATGCTACATAAAACGAAACCACCAGTGCCTACCTGCCAATACCTTG i chlSab2.chr20_KE148049v1_random C 0 C 0 s calJac3.chr21 50446847 88 - 50472720 GAGCTCATCACAAATGAAAAGCTAAGTTTGAATGTTCAAGAAGGCATGCTACATAAAGTGAAATCACCAGTGCCTACCTG---ATGCTTTG i calJac3.chr21 C 0 T 30225 a score=3273469.000000 s hg38.chr1_KI270765v1_alt 43934 1454 + 185285 ACCCAGAACTTCCTGCTGAGGAACAGAGGCAGGAAAGGCAGAAGCTCTCTGGAGAGCTCTTTGCCTGACTGTGACCCAAACTTTCTGTCCTGATGCAGAGGTGGAAAAGGCAGTTATTTCCCCC-GAGACTCAAACCTCTTACCCACAGGGTAAAGACAGAAAACCTCCATTCTAGAAAGGGAGAGCTGGAAAGGACACTCAAGCAAAGTCCAGGCCTTCAACCAAAGAGTGGGAAGGTCCAGATTTCAGGAGGATTCCCCACTTACTACTGCCCAACTCTTTCTCTCAGAGTCCAAACTTGAGGGCTTCAGAGCTGGCCAGGCACCCAGTCCAGGAGGAATGTGGtgtgatctgagagatgaaaatacatgcccccttatagactaagacagactgtaagtttaaggaaacaaaagttagctacaggtccagggttcagggctcatctggcatggcaacgtcctgaattcctatggctacagaaaaaaacacactgttgctaaactccttaacaataggggctagcaagcaaattgtcaaaatcttcccagcccttctcaactggatttacaacccagatcactagagctctgatgggacaaaggagtggccttccattctttcccgataagcaactgcagatatcaagccagtttcagcc-atgt----tacagggactgcacacaaaccgacttcgtgtccagtagttcaccttttgacataaacagccaatttccacctcattttaatgctaaaatcccttcccaatgtgaatatggggtgcatgttacatatatgtttacccg-ttgcacatgagctcaatacccctcagaa------atggcgttt-ccccaaacctgctgaatatgtatgactctattgtgtgatacacaccctgtgaggcacaaaaaccaacctgcc------------c--------------tctctctctctctctctctgaagaaaaagcacttcttcaaagacacacaccagagactgtctcttcccggactgcaaactgatctcaccaatcaaattctacctactatgtagccaCCCTGGAGGCCTTTGAGAGGACGGTCAGATGGTCAGAGATAAGTTGCTCTGAATCCTGCTCCCAGGGCCAAAAACATCGACCTAGAAGG-AAGGGGCTTaagcacaaaatatgatttaaagagtttgtttgagccagtgtgaggatagttgcccagaaggctcagagccaagcaatcttgcatatgggttctgtttggcctttgttacaagcaggtttgtaaagaccaaaaagggagacagggagttggctggtagaaagttgcttgtcaggaactcccagtggtttacagaaataacattgattagggattagctatacattgttcagctacagggaatgagagatggtgtccagtgca-tgtgattaggttactttatagctaactgtggcaatagcaagcagtttcagtggatgaatacatagct s panTro4.chr1_AACZ03149435_random 152953 1467 + 173505 ACCCAGAACTTCCTGCTGAGGAACAGAGGCAGGAAAGGCAGAAGCTCTCTGGAGAGCTCTTTGCCTGACTGTGACCCAAACTTTCTGTCCTGATGCAGAGGTCGAAAAGGCAGTTATCTCCCCCTGAGACTCAAACCTCTTACCCACAGGGTAAAGACAGAAAACCTCCGTTCTAGAAAGGGAGAGCTGGAAAGGACACTCAAGCAAAGTCCAGGCCTTCAGCCAAAGAGTGGGAAGGTCCAGATTTCAGGAGGATTCCCCACTTACTACTGCCCAACTGTTTCTCTCAGAGTCCAAACTCGAGGGCTTCAGAGCTGGCCAGGCACCCAGTCCAGGAGGAATGTGGtgtgatctgagagatgaaaatacatgcccccttatagactaagacagactgtaaggttaaggaaacaaaagttagctacaggtccagggttcagggctcatctggcatggcaacgtcctgaattcctatggctacaggaaaaaacacactgttgctaaactccttaacaataggggctagcaagcaaattgtcaaaatcttcccagcccttctcaactggatttacaacccagatcactagagctctgatgggacagaggagtggccttccattctttcccgataagcaactgcagatatcaagccagtttcagcc-atgt----tacagggactgcacacaaaccgacttcgtgtccagtagttcaccttttgacataaacagccaatttccacctcattttaatgctaaaatcccttcccaatgtgaagatggggtgcatgttacatatatgtttacccg-ttgcacatgagctcaatacccctcagaa------atggcgttt-ccccaaacctgctgaatatgtatgactctattgtgtgatacacaccctgtgaggcacaaaaaccaacctgccctctctctctctc--------------tctctctctctctctctctggagagaaagcacttcttcaaagacacacaccagagactgtctcttcccggactgcaaactgatctcaccaatcaaattctacctactatgtagccaCCCTGGAGGCCTTTGAGAGGACGGTCAGATGGTCAGAGATAAGTTGCTCTGAATCCTGCTCCCAGGGCCAAAAACATCGACCTAGAAGG-AAGGGGCTTaagcacaaaatatgatttaaagagtttgtttgagccagtgtgaggatagttgcccagaaggctcagagccaagcaatcttggatatgggttctgtttggcctttgttacaagcaggtttgtaaagaccaaaaagggagacagggagttggctggtagaaagttgcttgtcaggaactcccagtggtttacagaaataacattgattagggattagctatacattgttcagctacagggaatgagagatggtgtccagtgca-cgtgattaggttactttatagctaactgtggcaatagcaagcagtttcagtggatgaatacatagct i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11228963 1442 + 72422247 ACCCAGAACTTCCTGCTGAGGAACAGAGGCAGAAAAGGCAGAAGCTCTCTGGGGAGCCCTTTGCCTGACTGTGACCCAAACCTTCTGTCCTGATGCAGAGGTGGAAAAGGCAGTTATTTCCCCCTGAAACTCAAATCTCTTACCCACAGGGTAAAGACAGAAAACCTCTGTTCTAGAAAGGGAGAGCTGGAAAGGACAATCAAGCAAACTCCAGGCCTTCAACCAAAGAGTGGGAATGTCCAGATTTCAGGAGGATTCACCACTTACTACTGCCCAGCTGTTTCTCTCAGAGTCAGAATTCGAGGGCTTCAGATCTGGCCAGGCACCCAGTCCAGGAGGAATGTGGtgtgatctgagagatgaaaatacatgcacccttatagactaagacagactgtaaggttaaggaaacaaaagttagctacaggtcaagggttcagggctcatttggcatggcaacttgctgaattcctatggctacaggaaaaaccacactcttgctaaactccttaacattaggagctagcaagcaaattgtcaaaatcttcccagcccttctcaactggatttacaacccagatcactagacctctgatgggacagaggcgtgcccttccattctttcctgataggcaactgcagacctcaagccagtttcagcc-atgt----tacagggactgcacacaaaccgaattcatgtccagtagttcaccttttgacatgaaaagccaatttctgccttattttaatgctaaaatcccttcccaatgtgaagatggggtgcatgttacatatatgtttacctg-ttgcacatgagcttaatactcctcagaa------atggtgttt-ccccaaacgtgctgaatatgtataactccattgtgtgatacacaccctgtgaggcacaaaaaccaacctgcc----------------------------------ctctctctctctgaagagaaagtacctcttcaaagacacacactggagactgtctattcctggactgcaaacttacatcaccaataaaattcttactactatttagccaCCCTGGAGGCCTTTGAGAGGACAGTCAGATGGTCAGAGATGAGTCACTCTGAATCATGCTCCCAGGGCCAAAAACGTTGACATAGAAGGCAAGGGGCTTaagcacaaaatatgatttaaagagtttgtttgagccaatgtgagtgtagttgcccagaaggctcagacccaagcaatattggatatcggttctatttggcctttgttacaagcaggtttgtaaagaccaaaaaaggagtcagggagttggctggtagaaagttgcttgtcaggaactcccactggtttacagaaataacatt-------gattagctatacattgttcagctacagggagtgagagatggtgtccagtgcagcatgtttagcttactttatagctaactgtggcaatagcaagcagtttcagtggatgcatacatagct i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56420514 1452 - 109391073 ACCCAGAACTTCCTGCCGAGGAACACAGGCAGGAAAGACAGAAGCTCTCTGGAGAGCTCTTTGC----CTGTGACCCAACCCTTCTGTCCTGATGCAGAGGTGGAAAAGGCAGTTATTTCCCCCTGAGACTAAAACCTCTTACCCACAGGGTAAAGACAGAAAACCTCCGTTCTAGAAAGGGAGAGCTGGAAAGGACACTCAAGCAAACTCCAGGCCTTCAACCACAGAGTGAGAAGGTCCAGATTTCGGGAGGATTCCCCACTTACTACTGCCCAACTG-TTCTCTCAGAGTCAGAACTCCAGGGCTTCAGAGCTGGCCAGGCACCCAGTCCAGGAGGAATGTGGtgtgatctgagagatgaaaatacatgcccccttatagactaagacagactctaaggttaaggaaacaaaaattagctacagatcaagggttcagggctcatctggcatggcaacttcctgaattcctatggctacaggaaaaaccacactcttactaagctccttaacaataggagctagcaagcaaattgtcaaaatcttcccagcccttctcaactggatttacaacccagatcactagacctctgatgggacagaggagtgcccttccattctctcctgataagcaactgcagatatcaagccagtttcagcc-atgt----tacagggactgcacacaaaccaacttggtgtccagtagttcaccttttgacataaacagccaatttccacctcattttaatgctgaaatcccttcccaatgtgaagatggggtgcatgttacatatatgtttacgca-ttgcacatgagctcaatacccctcagaa------atggtgttt-ccccaaacctgctgaatatgtatgactctattgtgtgatacacaccctgtgaggcacaaaaaccaacctgcc----------ctc--------------tctctctctctctctccctgaagagaaagcacctcttcaaagacacacaccagagactgtctcttcctggactgcaaactgatctcaccaataaaattcttactactatgtagccaCCCTGGAGGCCTTTGAGAGGACAGTCAGATGGTCAGAGATGAGTTGCTCTGAATCCTGCTCCCAGGGCCAAAAACgtcgacctagaagg-aaggggcttaagcacaaaatacgattaaaagagttcgtttgagccagtgtgaggatagttgcccggaaggttcagagccaagcaatcttggatacgggttctgtttggcctttgttacaagcaggtttgtaaagaccaaaaagggagacagggagttggcgggtagaaagttgcttgtcaggaactcccagtggtttacagaaataacattgattagggattagctatacattgttcagctacagggagtgagagatggtgtccagtgca-catgattaggttactttatagctaaccgtggcaatagcaagcagtttcagtggatgaatacatagct i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128132344 1484 + 229590362 ACCCAGACCTTCCTAACGAGGGACAGAGACAGAAAACACAGAAGCTTTCCACACAGCGCTTTGCCTGACTGTGACCCAAACTTTCTGACCTGAGGCAGAGGTGGAAAGGGCAGTTTTTCCTCCT-GAAACTCAAGTCTCTTACCCACAGGGT--AGACAGAAAACCTCCACTGTAGAAAGGGAAGGCTGGAAAGGACACTCAAGCAAACTCCAGGCCTTCAACCAAAGAGTGGGAAGGTCCAGATTTCAGGAGGATTCACCCTTTACTACTGCCCAACTGTTTCTCTCAGAGTCAGAACTCAAGAGCCTCAGAGCTGGCCAGGCACCCAGTCCAGGAGGAATGTGGtgtgatctgagagacgaaaatagatgtgccattgtagactaagagagcttctaaggttaaggaaacaaaagttagctacaggtcaaggattcagggctggactggtatagcaacttcctaaatttctatggttacaagaaaaaccacactcttgctaaactccttaacaataggagctagcaggcaaattgtcaaaatcttcccagaaattctcaacgggatttacaacccagatcactagacctctgatgggacagaagagtggccttccattctctcctgataagctactgcagatatcaagccagtttcagcctgtgtgcagttcagggaccgcacacaagccgacatcgtgtccaatagttcatcttttgacataacgagccaatttccacctcattttaatgctaaaatcccttcccaatgtgaagatggggtgtatgttacatatatg--taccca-ttgcacatgagctcaataccccttagaagtgtgtatggcctttcccccaaacctactgaatatatatgactctattgtgtgatatacgccctgtgaggcacaaaaacctacctgccctctctctctctg----tctctctctctctctctctctctctctctgaagagaaagcacctcttcaaaaacacacaccagagactgtctcttcctggactgcaaactgatctcaccaataaaattcttactactatttagccaCCCTGGAGGCCTTGGAGAGGACAGTCAGATGGTCAGAGATGAGTCACTCTGAATCCTGCTCCCAGGGCCAAAAACATTGacctagaagg-aaggtgcttaaacacaaaatatgatttaaagagtttgcttgagccaatgtgaggacatttgcccagaagactcagacccaagcaatcttggatgtgggctccatttgtcctttgttacaagtgggtttctaaagaccagaaagggggaccggggg-aggctggtacagaattacttgtcaggaactccctgaggtttacagaaataacattgattagagattaactatacattgttcagctatagggagtgagagatggtgtccagtacaccatgtttaggttactttatagctacgtgtggcgatagcaagcagtttcaatagatgaatacacagct i rheMac3.chr1 C 0 I 64460 s macFas5.chr1 125099666 1456 - 227556264 ACCCAGACCTTCCTGCCGAGGAACAGAGGCAGAAAAGGCAGAAGCTCTCTGGAGAGCTCTTTGCCTGACTG-AACCCAAACCTTCTGTCCTGACGCAGAGGTGGAAAAGGCAGTTATTTCCCCT-GAAACTCAAATCTCTTACCCACAGGGTAAAGACAGAAAACCTCCGTTCTAGAAAGGGAGAGCTGGAAAGGACACTCAAGCAAACCCCA-GCCTTCAACCAAAGAGTGGGAAGGTCCAGATTTCAGGAGGATTCACCCTTTACTACCGCCCAACTGTTTATCTCAGAGTCAGAACTCAAGAGCCTCAGAGCTGGCCAGGCACCCAGTCCAGGAGGAATGTGGtgtgatctgagagacgaaaatacatgcccccttagagaataaga----ctctaaggttaaggaaacaaaagttcgctacaggtcaagggttcagggctcagctggcatgacaacttcctgaattcctatggctacaggaaaaaccacactcttgctaaactcc-tgacaacaggagctggcaggcaaattgtcaaaatcttcccagcccttctcaactggatttacaacccagatcactagacctccaatgggacagaggagtggcctttcattctctcctgataagcaactgcagatatcaagccagtttcagcc-atgt----tacagggactgcacacaaaccgacttcgtgtccagtagttcaccttttgacatcaaaagccaatttccaccttatttcaatgctaaaatcccttcccaatgtgaagatggggtacatgttacatatatgtttacccgtttgcacatgagctcaatacccctcagaa------atggtcttt-ccccaaacctgctgaatatgtataactccattgtgtgatacacaccctgtgaggcccaaaaaccaacctgccctctctctctctg------------------tctctctctctctctgaagagaaagcacctcttcaaaaacacacaccagagactgtctcttcctggactgcaaactgatctcaccaataaaattcttactactatttagccaCCCTGGAGGCCTTTGAGAGGATAGTCAGTTGGTCAGAGATGAGTGGCTCTGAATCCTGCTCCCAGGGCCAAAAACGTCGACCTAGAAGG-AAGGGGCTTaagcacaaaatatgatttaaagagtttgtttgagccaatgtgagggtagatgcccggaaggctcaaacccaagcaatcttggatatgggttctgtttggcctttgtcacaagcaggtttgtaaagaccaaaaaaggagacagggagttggctggtagaaagttgtttgccaggaactcccagtggtttatagaaataacattgattagggattagctatacattgttcagctacagggagtgagagatggtgtccagtgca-catgattaggttacttcacagctaactgtggcaatagcaagcagtttcagtggatgcatacatagct i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98608929 1432 - 220367699 ACCCAGACCTTCCTGCCGAGgaacagaggcagaaaaggcaGAAGCTCTCTGGAGAGCTCTTTGCCTGACTG-AACCCAAACCT----------------GGTGGAAAAGGCAGTTATTTCCCCT-GAAACTCAAATCTCTTACCCACAGGGTAAAGACAGAAAACCTCCGTTCTAGAAAGAGAGAGCCGGAAAGGACACTGAAGCAAACTCCAGGCCTTCAACCAAAGAGTGGGAAGGTCCAGATTTCAGGAGGATTCACCCTTTACTACCGCCCAACTGTTTCTCTCAGAGTCAGAACTCAAGAGCTTCAGAGCTGGCCAGGCACCCAGTCCGGGAGGAATGTGGTGTGATCTGAGAGACGAAAATACATGCCCCCTTAGAGAATAAGA----CTCTAAGGTTAAGGAAACAAAAGTTCGCTACAGGTCAAGGGTTCAGGGCTCAGCTGGCATGACAACTTCCTGAATTCCTATGGCTACAGGAAAAACCACGCTCTTGCTAAACTCC-TGACAACAGGAGCTAGCAGGCAAATTGTCAAAATCTTCCCAGCCCTTCTCAACTGGATTTACAACCCAGATCACTAGACCTCCAATGGGACAGAGGAGTGGCCTTTCATTCTCTCCTGATAAGCAACTGCAGATATCAAGCCAGTTTCAGCC-ATGT----TACAGGGACTGCACACAAACCGACTTCGTGTCCAGTAGTTCACCTTTTGACATAAAGAGCCAATTTCCACCTTATTTCAATGCTAAAATCCCTTCCCAATGTGAAGATGGGGTACATGTTACATATATGTTTACCCG-TTGCACATGAGCTCAATACCTCTCAGAA------ATGGACTTT-CCCCAAACCTGCTGAATATGTATAACTCCATTGTGTGATACACACCCTGTGAGGCACAAAAACCAACctgccccctctctctctc--------------tctctctctctctctctctgaagagAAACCACCTCTTCAAAGACACACACCAGAGACTGTCTCTTCCTGGACTGCAAACTGATCTCACCAATAAAATTCTTACTACTAGTTAGCCACCCTGGAGGCCTTGGAGAGGACGGTCAGATGGTCAGAGGTGAGTCGCTCTGAATCCTGCTCCCAGGCCCAAAAACGTTGACCTAGAAGG-AAGGGGCTTAAGCACAAAGCATGATTTAAAGAG-TTGTTTGATCCAGTGTGAGGGTAGATGCCCAGAAGGCTCAGATACAAGCAATCTTGGATATGGGTTCT-TTTGGCCTTTGTTAC-AGCAGGTTTGTAAAGACCAAAAAGGGAGACAGGGAGTTGGCTGGTAGAAAGTTGTTTGTCAGGAACTCCCagtggtttacagaaataacattgattaggGATTAGCTATACATTGTTCAGCTACAGGTAGTGAGATATGGTGTCCAGTGCA-TATGATTAGGTTACTTTATAGCTAACTGTGGCAATAGCAAGCAGTTTCAGAAG---------CAGCT i papAnu2.chr1 C 0 C 0 s chlSab2.chr20_KE148049v1_random 193080 1473 + 1557941 ACCCAGACCTTCCTGCCGAGGAACAGAGGCAGAAAAGGCAGAAGCTCTCTGGAGAGCTCTTTGCCTGACTATGACCCAAACCTTCTGTCCTGATGCAGAGGTGGAAAAGGCAGTTATTCCCCCT-GAAACTCAAAGCTCTTACCCACAGGGTAAAGACAGAAAACCTCCATTCTAGAAAGGGAGAGCTGGAAAGGACACTCAAGCAAACTCCAGGCCTTCGACCAAAGAGTGGGAAGGTCCAGATTTCAGGAGGATTCACCCTTTTCTACTGCCCAACTGTTTCTCTCAGAGTCAGAACTCAAGCGCATCAGAGCTGGCCAGGCACCCAGTCCGGGAGGAATGTGGtgtgatctgagagacgaaactacatggccccttagagactaaga----ctctaaggttaaggaaacaaaagttagctacaggtcaagggttcagggctcagctggcatgccaacttcctgaattcctatggctgcaggaaaaaccacactcttactaaactccttaacaataggagctagcaggaaaattgacaaaatcttcccagcccttctcaactggatttacaacccagatcactagacctccaataggacagaggagtggccttccattctctcctgataagcaactgcagatagcaagccagtttcagcc-atgt----tacagggactgcacacaaacccacttcgtgtccagtagttcaccttttgacataaaaaaccaatttccaccttattttaatgctaaaatcccttcccaatgtgaagatgaggtgcatgttacatatgtt--taccca-ttgcacatgagctcaatacccctcagga------acggacttt-ccccaaacctgctgaatatgtataactccattgtgtgatacacaccctgtgaggcacaaaaaccaacctactctctctctctctctctctctctctctctctctctctgtctctctctgaagagaaagcacctcttcaaagacacacaacggagactctctcttcctggactgcaaactgatctcaccaataaaattcttactactatttagccaCCCTGGAGGCCTTGGAGAGGACAGTCAGATGGTCAGAGATGAGTCGCTCTCAATCCTGCTCCCAGGGCCAAAAACGTCAACCTAGAAGG-AAGGGGCTTaagcacaaaatatgatttaaagag-ttgtttgatccagtgtgaggatagttgcctggaaggctcagacccaagcaatcttggatatgggttctgtttggcctttgttacaagcaggtttgtaaagaccaaaaaaggagacagggagttggctggtagaaagttgtttgccaggaactcccagtggtttatagaaataacattgattagggattagctatacattgttcagctacagggagtgagagatggtgtccagtgca-catgattaggttacttcatagctaactgtggcaatagcaagcagtttcagtggatgaatacatagct i chlSab2.chr20_KE148049v1_random C 0 C 0 e calJac3.chr21 50446935 30225 - 50472720 T a score=614194.000000 s hg38.chr1_KI270765v1_alt 45388 455 + 185285 caaaagtggggaAGTGGCCGGTGGTGG----------TCATAATTC--AcattttggtgggccaagttgggcagatcaccttaggttaggagtttgagaccagcctggccaacatgacgaaaccctgtctctactaaaaatacaaaaaaaaaaaaaaaaaaaaaaataggggagcatcgtggttcgcgacttcagtcccagcaactcgggaggctgtggcaggagaattgcttgaacctgactggaggaggttgcagtgggccaagatcctgccactgcactccagcctgggcaacagagtgagactccatttcaatacaataaaaaaaaaaTTTTTTTTAAC-TTAAAAGATTTTAGaaagca-ggaagtaggatgtggttgctgtctcattttaatgcctagctctgggcatgctaagttgaaagcactcattttcttcacatgaaaaagttcttctcttttctttc s panTro4.chr1_AACZ03149435_random 154420 449 + 173505 caaaagtggggaAGTGGCCGGTGGTGG----------TCATAATTC--Acattttggtgggccaagttgggcagatcaccttgggttaggagtttgagaccagcctggccaacatgacgaaaccctgtctctactaaaaatac-----aaaaaatatatatatatataggggagcatcgtggttcgcgacttcagtccgagcaactcgggaggctgtggcaggagaattgcttgaacctgactggaggaggttgcagtgggccaagatcctgccactgcactccatcctgggcaacagagtgagactccatttcaatacaat-aaaaaaaaaTTTTTTTTAAC-TTAAAAGATTTTAGaaagca-ggaagtaggatgtggttgctgtctcattttaatgcctagctctgggcatgctaagttgaaagcactcattttcttcacatgaaaaagttcttttcttttctttc i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11230405 463 + 72422247 caaaagtgaagaagtggccggtggtggaggctcacgcctgtaattccaacactttgggaggccgaggtaggcggatcacctgaggttaggagtttgagaccagcctggccaacatgatgaaaccacatctctactaaaaatacacacacacacaca---aaaaaaataggcaggcatggtagttcgtgcctttagtcccagcaactcaggaggctgtggcaggagaatcgcttgaacctgactggaggaggttgcagtggaccaagatcctgccactgcactccagcctgggcaaccaagtgagactccatctgaatacaat-aaaaaaaattcttttaaaac-ttaaaaaaatttagaaagca-ggaagtaggatgtggttgctgtctcattttaatgcccaggtctgggcatgctaagttgaaagcactcattttcctcacatgaaaaagttcttttcAtttctttt i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56421966 405 - 109391073 caaaagtggggaAGTgaccggtggtggtggctcacacctgtaattc--acactttgggaggccaagttgggcggatcaccttaggttaggagtttgagaccagcctggccaacatgacaaaaccccatctctactaaaaatacaaaaaaaaaaaaa-aaaaaaaacggggggagcatggtgcttcgtgcctttagtcccagcaactcgggaggctgtagcaggagaattgcttgaacccgactggaggaggttgcagtgggccaagatcTTG----------------------------------------------CAATAAAAAAAAATTTTTTTTAAAC-TTACAAAATTTTAGaaagca-ggaagtaggatgtggttgctgtctcattttaatgcctagctctgggcatgctaagttgaaagcactcattttcctcacatgaaaAAGttct------------- i nomLeu3.chr12 C 0 C 0 s macFas5.chr1 125101122 454 - 227556264 caaaagtgagaaAGTggccagtggtggtggctcacgcctgtaattccaacacattgggaggccgaggtgggcggatcacctgaggttaggagtttgagaccaacctggccaacatgatgaaacctcgtctccactaaaaatacaaaaaaaaaaaaaaaaaaaaaaagtggcaggcatggtggtttgcgcctttagtcccagcagctcaggaggcagtggcaggacaatcacttgaatacgactggaagaggttgtattgggccaaactcctgccactgcactccagcttgggcaatggagtgagactccatctcaataaa---taaaTTATTTTTTAAAAAAC-TTTAACAATTTTAAAAAGCAgggaagtaggatgtggtttctttct-----------ctagctctaggcatgctaatttgaaagcattcattttcctcacatgaaaaagttcttttcttTCCTTTC i macFas5.chr1 C 0 I 208 s papAnu2.chr1 98610361 454 - 220367699 CAAAAGAGGGGAAGTGGCCAGtggtggtggttcatgcctataattccaacactttgggaggccaaggtgggtggatcacctgaggttaggaggttgagatgagcctggccaacatgatgaaaccccgtctctactaaaaatacaaaaaaaaaaaaaaa----------ggctggcatggtggttcgcgcctttagtcccagcaacttgggaggctgtggcaggagaatggcttgaacctgactGGAGGAGGTAGCAGTgggccaagatcctgccactgcactccagcctggacaacaaagtgaaactccatctcaatacaat-taaaaaaatttt--gtaaac-ttAAACAATTTTAGAAAGCA-GGAAGTAGGATGTGGTTGCTGTCTCATTTTAATGCCTAGCTGTGGGCATGCTAATTTGAAAGCACTCATTTTCCTCAcatgaaaaagttattttctttcttttc i papAnu2.chr1 C 0 C 0 s chlSab2.chr20_KE148049v1_random 194553 451 + 1557941 caagagtgaggaAGTggccagtggcagtggctcacgcctgtaattccaacactttgggaggctgaggtgggtggatcacctgaggttaggagtttgagaccaacctggcccacatgatgaaacctcgtctccactacaaatacaaaaataaaataaaa----taaaatggcaggcatggtggtttgcgcctttagtcccagcagctcaggaggctgtggcaggacaatcacttgaatatgactggaagaggttgtattgggccaaactcctgccactgcactccagcttgggcaatggagtgagactccatctcaataaa---taaaTTATTTTTTAAAAAACTTTAAAAAATTTTAAAAAGCAGGGAAGTAGGATGTGGTTTCTTTCT-----------CTAGCTCTAGGCATGCTAATTTGAAAGCACTCATTTTCCTCACATGAAAAAGTTCttttctttcttttc i chlSab2.chr20_KE148049v1_random C 0 C 0 e calJac3.chr21 50446935 30225 - 50472720 T e rheMac3.chr1 128133828 64460 + 229590362 I a score=1913.000000 s hg38.chr1_KI270765v1_alt 45843 3 + 185285 ttt s panTro4.chr1_AACZ03149435_random 154869 2 + 173505 -tt i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11230868 3 + 72422247 ttt i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56422371 2 - 109391073 -tt i nomLeu3.chr12 C 0 C 0 s papAnu2.chr1 98610815 3 - 220367699 ttt i papAnu2.chr1 C 0 I 1 e calJac3.chr21 50446935 30225 - 50472720 T e chlSab2.chr20_KE148049v1_random 195004 0 + 1557941 C e rheMac3.chr1 128133828 64460 + 229590362 I e macFas5.chr1 125101576 208 - 227556264 I a score=697800.000000 s hg38.chr1_KI270765v1_alt 45846 401 + 185285 ttttttttttttttagagacacactctcacttactgtgccaccca---taaagtgaagtggcatcatctctgctcactgcaacctccacctccagggatcaagtgattctcaagcctcagcctcccaagtagctgggattacag--gtgccagccaccatgcctggcttatttttgtattttagtagagatggggtttcaccatgttggccaggctggtctcgaactcctgacctcagatgatccacctgcctcggcctcccaaagtgctacgattacaggcgtgagccaccatgcccagccAATACCATTAATTTAATCTACAGCTAAATCTATTATTTTTTCATGTTACAAATTCAACAAGAAAATTTTTCCCTAATGAAACATCACATTTAAAGCATAAGTAG s panTro4.chr1_AACZ03149435_random 154871 401 + 173505 ttttttttttttttagagacacactctcacttactgtgccaccca---taaagtgaagtggcatcatctctgctcactgcaacctccacctccagggatcaagcgattctcaagcctcagcctcccaagtagctgggattacag--gtgccagccaccatgcctggcttatttttgtattttagtagagatggggtttcaccatgttggccaggctggtctcgaactcctgacctcagatgatccacctgcctcggcctcccaaagtgctacaattacaggcgtgagccaccatgcccagccAATACCATTAATTTAATCTACAGCTAAATCTATTATTTTTTCATGTTACAAATTCAACAAGAAAATTTTTCCCTAATGAAACATCACATTTAAAGCATAAGTAG i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11230871 404 + 72422247 ttttttttttttttggagacacactctcgcttactgtgccacccatgctaaaatgaaatggcatgatctctggtcactgcaacctccacctccagggatccagcaattctcatgcctcagcctccccagtagctgggattacag--gtgccagccaccatgcctggctaatttttgaatttcagtagagatggggtttcaccatggtggccaggctggtcttgaactcctgacctcagatgatccacccgcctcagcctcccaaagtgctgggattacaggtgtgagccaccatgcccagccAAAACCATTAATTTAATCTACAGCTAAATCTATTATTTTTTCATGTTACAAATTCAACAAGAAAAATTTTCCCTAATGAAACATCACATTTAAAGCATAAGTAG i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56422373 393 - 109391073 tcttttttttttttggagacacactctcacttactgtgccaccca---tacagtgaagtggcatcatctctgctcactgcaatcttcacctccagggatcaagcgattctcgtgcctcagcctcccaagtagctgggattacaggtgtgccagccaccatgcctggctaatttttgtattttagtagagacggggtttcaccatgttggccaggctggtctcaaactcctgacctcagatgatccacctgcctcggcctcccaaactgctaggattacaggcgtgagccaccatgc----------ccATTAATTTAATCTACAGCTAAATCTATTATTTTTTCATGTTACAAATTCAACAAGAAAATTTTTCCCTAATGAAACATCACATTTAAAGCATAAGTAG i nomLeu3.chr12 C 0 C 0 s macFas5.chr1 125101784 404 - 227556264 TCTCttttttttttggagacacactctcacttaccgtgccacccatgctaaagtgaagtggcatgatctctactcactgctacctccacctccagggatcaagcgattctcatgcctcagcctcccgagtagctgggattacag--gcgccagacaccatgcctggctaatgtttgtattttagtagagacggggtttcaccatgttggccaggctggtcttgaactcctgacctcagatgatccacccgcctcagcctcccaaagtgctgggattacaggtgtgagccaccaagcccagccAAGACCATTAATTTAATCTACAGCTAAATCTATTATTTTTTCATGTTACAAATTCAACAAGAAAAGTTTTCCCTAATGAAACATCACATTTAAAGCATAAGTAG i macFas5.chr1 I 208 C 0 s papAnu2.chr1 98610819 404 - 220367699 cttttcttttttttggagacacactGTCACTTACTGTGCCACCCATGCTaaagtgaagtggcatgatctctactcactgctacctccacctccagagatcaagtgattctcgtgcctcggcctcctgagtacctgggattacag--gcgccagacaccatgcctggctaatgtttgtattttagtagagatggggtttcactatgttggccaggctggtcttgaactcctgagctcagatgatccacccgccttggcctcccaaagtgctgggattacaggcgagagccaccatgcccagccaagatcatTAATTTAATCTACAgctaaatctattattttttcatgttacaaattcaacaagaaaagttTTCCCTAATGAAACACCACATTTAAAGCataagtag i papAnu2.chr1 I 1 C 0 s chlSab2.chr20_KE148049v1_random 195004 396 + 1557941 -tttttttttttttggagacacactctcacttaccgtgccacccatgctaaagtgaagtggcatgatctctactcactgctacctccacctccagggatcaagcgattctcatgcctcagcctcctgagtagctgggattacag--gcgccagacaccatgcc-------tgtttgtattttagtagagacggggtttcaccatgttggccaggctggtcttgaacttctgacctcagatgatccacccacctcagcctcccaaagtgctgggattacaggcctgagccaccaagcccagccAAGACAATTAATTTAATCTACAGCTAAATCTATTATTTTTTCATGTTACAAATTCAACAAAAAAAGTTTTCCCTAATGAAACATCACATTTAAAGCATAAGTAG i chlSab2.chr20_KE148049v1_random C 0 I 33 e calJac3.chr21 50446935 30225 - 50472720 T e rheMac3.chr1 128133828 64460 + 229590362 I a score=24649.000000 s hg38.chr1_KI270765v1_alt 46247 32 + 185285 AATTAAAAAATGTAATagacagtgtcttgctg s panTro4.chr1_AACZ03149435_random 155272 32 + 173505 AATTAAAAAATGTAATagacagtgtcttgctg i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11231275 32 + 72422247 AAAAAAAAAATGTAATagacagtgtcttgctc i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56422766 32 - 109391073 AATAAAAAAATGTAATagacagtgtcttgctc i nomLeu3.chr12 C 0 C 0 s macFas5.chr1 125102188 29 - 227556264 -TAAACGAAAAAAAAAAAAAagggtcttg--c i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98611223 31 - 220367699 -aaaaagaaatgtaatagagagtgtcttgctc i papAnu2.chr1 C 0 C 0 e calJac3.chr21 50446935 30225 - 50472720 T e chlSab2.chr20_KE148049v1_random 195400 33 + 1557941 I e rheMac3.chr1 128133828 64460 + 229590362 I a score=173496.000000 s hg38.chr1_KI270765v1_alt 46279 97 + 185285 tgtcatccaggtgagagtgcactggtgcaaccacagctgaccaacctggaac-tctgggctcaggcagtcctcccagctcagccCGCCTTTTAACTTC s panTro4.chr1_AACZ03149435_random 155304 97 + 173505 tgtcatccaggtgagagtgcactgctgcaaccacagctgaccaacctggaac-tctgggctcaggcagtcctcccagctcagccCGCCTTTTAACttt i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11231307 97 + 72422247 tgtcatccaggtgagagtgcactggtgcaaccacagctgaccagcctggaac-tctgggctcagggagtcctcccagctcagcctgccttctaatttt i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56422798 97 - 109391073 tatcatccaggtgagagtgcactggtgcaaccacagctgaccagcctggaac-tctgggctcaggcaatcctcccagctcagcctgccttttaatttt i nomLeu3.chr12 C 0 C 0 s macFas5.chr1 125102217 98 - 227556264 tgtcatccaggcgagagtgcactggtgcaaccacagctgacccacctggaacttttgggctcaggcagtcctcccagctcggcctgccttttaacttt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98611254 97 - 220367699 tgtcatccaggtgaGAGTGCATTGGTGCAACCACAGCTGACCAACCTGCAac-tctgggctcaggcagtcctcccagctcagcctgcctttgaatttt i papAnu2.chr1 C 0 C 0 s chlSab2.chr20_KE148049v1_random 195433 98 + 1557941 tgtcatccaggcgagagtgcactggtgcaaccacagctgaccaacctggaacttctgggctcaggcagtcctcccagcttagcctgccttttaacttt i chlSab2.chr20_KE148049v1_random I 33 C 0 e calJac3.chr21 50446935 30225 - 50472720 T e rheMac3.chr1 128133828 64460 + 229590362 I a score=327393.000000 s hg38.chr1_KI270765v1_alt 46376 141 + 185285 TtagagatggcatcttgccctgttgcccaggctggcctccaactccttgcctaaagcaatcctcccacatcagcctcctgattttctgggattacaggtgtgagtcaaccagcctggcATTGCAGG----------------GAAAAAAAAAAGTCA s panTro4.chr1_AACZ03149435_random 155401 142 + 173505 ttagagatggcatcttgccctgttgcccaggctggtctccaactccttgcctaaagcaatcctcccacatcagcctcctgattttctgggattacaggtgtgagtcaaccagcctggcATTGCAGG---------------AAAAAAAAAAAAGTCA i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11231404 141 + 72422247 tcagagacagcatcttgccctgttgcccaggctggtctccaactccttgcctaaagcaatcctcccacctcagcctcctgattttctgggattacaggtgtgagtcaaccagcctggcATTGCAGG----------------AAAAAAAAAAAGTCA i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56422895 145 - 109391073 ttagagatggcatcttgccctgttgcccaggctggtctccaactccttgcctaaagcaatcctcccacgtcagcctcctgattttctgggattacaggtgtgagtcaaccagcctggTATTGCAGG------------AAAAAAAAAAAAAAAGCCA i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128198288 145 + 229590362 ttagagatggcatcttgccctgttgctgaggctggtctccaactccttgcctaaagcaatcctcccacctcagcttcctgattttctgggattacaggtgtgagtcaaccagcctggcAGTGCAAG------------AAAAAGAAAAAAAAAGTCA i rheMac3.chr1 I 64460 C 0 s macFas5.chr1 125102315 140 - 227556264 ttagacatagcatcttgccctgttgcccaggctggtctccaactccttgcctaaagcaatcctcccacctcagcctcctgattttctgggattacaagtgagagtcaaccagcctggcATTGC-----------------AAAAAAAAAAAAAGTCA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98611351 157 - 220367699 ttagagatggcatcttgccctgttgcccaggctggtctccaactccttgcccaaagcaatcctcccacctcagcctcctgattttctggtattacaggtatgagtcaacCAGCCTGGCATtgcaggaatttaaaaaaaaaaaaaaaaaaaaaagtca i papAnu2.chr1 C 0 I 321 s chlSab2.chr20_KE148049v1_random 195531 144 + 1557941 ttagacatagcatcttgccctgttgcccaggctggtctccaacgccttgcctaaagcaatcctcccacctcagcctcctgattttctgggattacaagtgtgagtcaaccagcctggcATTGC-------------CAAAAAAGAAAAAAAAGGTCA i chlSab2.chr20_KE148049v1_random C 0 C 0 e calJac3.chr21 50446935 30225 - 50472720 T a score=803811.000000 s hg38.chr1_KI270765v1_alt 46517 364 + 185285 AGAAATTATTCTTCAttttcttttattttgagttgaggtcttactctgtcacccaggctggagtgcagtggtacaattatagttcactgcagcctggatctcctgggctcaagtgatcctcctgcc---tcagcctcccaagcagctgggactaccaatgtgagccactgtgctggctagtttttt-aaaatcagctca--ttttt--aaatttgtagagacaggggtctcacc-----atatttcccaggctggtatcaaactcctgacttcaatccttcttctctcctcagctgcctaaaatgctaagattacaggtgtgagccaccacaccctgcTTAATTTCCATATTTTAATTTTATATACGTAATTATTAC s panTro4.chr1_AACZ03149435_random 155543 364 + 173505 AGAAATTATTCTTCAttttcttttattttgagttgaggtcttactctgtcacccaggctggagtgcagtggtacaattatagttcactgcagcctggatctcctgggctcaagcgatcctcctgcc---tcagcctcccaagcagctgggactaccaatgtgagccactgtgctggctagtttttt-aaaatcagctca--ttttt--aaatttgtagagacaggggtctcacc-----atatttcccaggctggtatcaaactcctgacttcaatccttcttctctcctcagctgcctaaaatgctaagattacaggtgtgagccaccacaccctgcTTAATTTCCATATTTTAATTTTATATACGTAATTATTAC i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11231545 370 + 72422247 ATAAATTATtctttattttattttattttgagttgaggtcttactctgtcacccaggctggagtgcggtggtacaatcatagttcactgcagcctggatctactgggctcaagtgatcctcctgcc---tcagcctcccaagcagctgggactacagacatgagccactgtgctggctagtttttt-aaaattagctcactttttt--aaacttgtagaaacagaggtctcacaggctggtgcttcccaggctggtattgaactcctggttgcaatccttcttctcttctcagctgcctaaattgctaagattacaggtgtgag-caccacgccctgcTTAATTTTCATATTTTAATTTTATATACGTAATTATTAC i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56423040 366 - 109391073 AGAAATTATCCtttattttattttattttgagttgaattcttactctgtcacccaggctggagtgcggtggtacaatcatagttcactgcagcctggatctcctgggctcaagcgatcctcctgcc---tcagcctcccaagcagctgggattacagatgtgagccattgtgctggctagtttttt-aaaatcagctca--tttttaaaaatttgtagagacaggggtctcacc-----atgttgtccaggctggtatcaaactcctggcttcaatccttcttctctcctcagctgcctaaaatgctaagattacaggtgtgagccaccacaccctgcTTAATTTTCATATTTTAATTTTATATACATAATTATTAC i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128198433 355 + 229590362 AGAAATTAttctttattttattttattttgagttgaagtcttactctgtcacccaggctgga--------gtgcaatgatagttcactgcagcctggatctcctgggctcaagcaatcctcctgcc---tcagcctccctagcagctgggactacagacatgagccactgtgctggctagttttat-aaagttagctca--ttttttaaaatttgtagagacaggggtctcacc-----atgttgcccaggctggtatcgaactcctggcttcaatccttct---ctcctcagctgcctgaagtgctaagattacaagtgtgaaccaccacaccctgcTTAATTTTCACATTTTAATTTTATATACGTAATTATTAC i rheMac3.chr1 C 0 I 8 s macFas5.chr1 125102455 355 - 227556264 AGAAATTAttc-----tttactttattttgagttgaggtcttactctgtcacccaggctggagtacggtggtacaatgatagttcactgcagcctggatctcctgggctcaagcgatcctcctgta---tcagcctcccaagcagctgggactacagacatgagccactgtgctggctagtttttt-taaattagctca--ttttaaaaaatttgtagagacagaggtctcacc-----atgttgcccaggctggtatcgaactcgcggcttcaatccttcttccctcctcagctgcctaaagtgctaagattacaggtgtgagctatcacaccctgcTTAATTTTCATATTTGAATTTTATAGAC------ATTAC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98611829 369 - 220367699 agaaattattctttatcttattttattttgagttgaggtcttactctgtcacccaggctggagtgcagtggtacaatgatagttcactgcagcctggatctgctgggctcaagcaatcctcctgcctcatcagcctcccaagcagctgggactacagacatgagccactgtgctggctagtttttt-taaattagctca--ttttaaaaaatttgtagagacaggggtctcacc-----atgttgcccaggctggtatcgaactcctggcttcaatccttcttctctcctcagctgcctaaagtgctaagattacaggtgtgagccaccacaccctgcttaagtttcatattttaattttatatacgTAATTATTAC i papAnu2.chr1 I 321 C 0 s chlSab2.chr20_KE148049v1_random 195675 356 + 1557941 AGAAATTAttc-----tttattttattttgagttgaggtcttactctgccacccagcctggagtgcggtggtacaatgatagttcactgcagcctggatctcctgggctcaagtgatcctcctgca---tcagcctcccaagcagctgggactacagacgtgagccactgtgctggctagttttttgttaattagctca--ttttaaaaaatttgtagagacagaggtctcacc-----atgttgcccaggctggtatagaactcctggcttcaatccttcttccctcctcagctgtctaaagtgctaagattacaggtgtga------acACCCTGCTTAATTTTCACATTTTAATTTTATATACATAATTATTAC i chlSab2.chr20_KE148049v1_random C 0 C 0 e calJac3.chr21 50446935 30225 - 50472720 T a score=8022.000000 s hg38.chr1_KI270765v1_alt 46881 4 + 185285 TGTC s panTro4.chr1_AACZ03149435_random 155907 4 + 173505 TGTC i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11231915 4 + 72422247 TGTC i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56423406 4 - 109391073 TGTC i nomLeu3.chr12 C 0 C 0 s macFas5.chr1 125102810 4 - 227556264 TGTC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98612198 4 - 220367699 TGTC i papAnu2.chr1 C 0 C 0 s chlSab2.chr20_KE148049v1_random 196031 4 + 1557941 TGTC i chlSab2.chr20_KE148049v1_random C 0 C 0 e calJac3.chr21 50446935 30225 - 50472720 T e rheMac3.chr1 128198788 8 + 229590362 I a score=2932338.000000 s hg38.chr1_KI270765v1_alt 46885 1290 + 185285 CTTAAGATAATTGGGGCAGTAATCTCTTTAAAGTTTTAGAGACTTAATTTATCTATTCACTCCACTGGAAGAGTATGCCAATTGGTTTCATAAGAAAATATATTTATAAATCAGAAAATTTCTTTCCACCAATCTAGGGGGCATTCGAAAGCAAATAATTGTGTTAAGTAACATCGTTTAAAGTGAAAACAGATGCAATGGTATTTATTAACAAGGCTTATCAGTGAGCGAAACAAACTGAAAAAAGGAACATCATTAGATCCTTGGAAAACCCTCAGTGCTGAAAATCTGAGTGATTCTGTGATACCCTTTTGAGTCTGGCAGG--GCATTCTCTTTCCCGAGCGTATAAAAGTGAGTAAATCATTTCTTTTCATCCATTTTCATTAAGAGCTGAACTTCCTTGATGTTCTGGAGATTATTAAATTTGATTTGTggccaggcgcagtggcttacgcctgtaatcctagcactttgggaggccaaggtgggcagatcacttgagttcaggagttcgaggccagcctggccaacatggccaaaccccatctctactaaaaatacaaaaattagccaggcatggtgtcacacgcctgtaatcccagctactcaggaggctgacgcacaagaatcacttgaacccgggaggccaaggctgcagtgagccaagattgtgccactgcattccagccttggtgacagagcgcgactctgtcttaagcaaaaaaaaT---TTTTGATTTGTATAGTTGTGAGAAGTGCTTATGTTGCTGACTCCATTGCTTATCTGTGATCATA-------------TAAATCTCTTTTCCCCTTTCTGTAGTGTGATTTAAACTTAATCCTTAAAGGACATGT-GTTTCAGCTGGTTAGAGGTTTTTAGCTACTAGAAACCTGAGTATAC--GAATCAAAGAAAACTGCTCCTTACCTGCCACAGACTTAGTTTTCTTTATGTACTAAGATTTCTTTCAGGTATAGTAATTTGTTAAAGCCAAGAGCTCCTATGGAATGAAGTTAGGTGGCGGGA--GTGGGTGGGGCATTGAGTAGTAAGATCGTCCTTATAATAGAGATGCCGCTCTTGCAGATATTGACAGCTATCGGGCCC-AAAAAATTGTTACCAAACATTGGAAAGACAAGATATGAGCAACTTCTGATTGCTGCAGTCTCAAATATCAAGAAATACCATTATCCTCAGGACAATGAATAGACAATCAAAAAAGACTCACAGACTAGATTAGCTGTCATGTATCACCAAACA----------CCTTGTCAAACACCACCCAACAGAGATTGTCCCCAGAACTT s panTro4.chr1_AACZ03149435_random 155911 1301 + 173505 CTTAAGATAATTGGGGCAGTAATCTCTTTAAAGTTTTAGAGACTTAATTTATCTATTCACTCCACTGGAAGAGTATGCCAATTGGTTTCATAAGAAAATATATTTATAAATCAGAAAATTTCTTTCCACCAATCTAGGGGGCATTCGAAAGCAAATAATTGTGTTAAGTAACATCGTTTAAAGTGAAAACAGATGCAATGGTATTTATTAACAAGGCTTATCAGTGAGCGAAACAAACTGAAAAAAGGAACATCATTAGATCCTTGGAAAACCCTCAGTGCTGAAAATCTGAGTGATTCTGTGATACCCTTTTGAGTCTGGCAGG--GCATTCTCTTTCCCGAGCATATAAAAGTGAGTAAATCATTTCTTTTCATCCATTTTCATTAAGAGATGAACTTCCTTGATGTTCTGGAGATTATTAAATTTGATTTGTggccaggcacagtggcttacgcctataatcctagcactttgggaggccaaggtgggcagatcacttgagttcaggagttcgaggccagcctggccaacatggccaaaccccatctctactaaaaatacaaaaattagccaggcatggtgtcacacgcctgtaatcccagctactcaggaggctgacgcacaagaatcacttgaacccgggaggccaaggctgcagtaagccaagattgtgccactgcactccagccttggtgacagagcgcgactctgtcttaagcaaaaaaaaa---TTCTGATTTGTATAGTTGTGAGAAGTGCTTATGTTGCTGACTCCATTGCTTATTTGTGATCATA-------------TAAATCTCTTTTCCCCTTTCTGTAGTGTGATTTAAACTTAATCCTTAAAGGACATGT-GTTTCAGCTGGTTAGAGGTTTTTAGCTACTAGAAACCTGAGTATAC--GAATCAAAGAAAACTGCTCCTTACCTGCCACAGACTTAGTTTTCTTTCTGTACTAAGATTTCTTTTAGGTATAGTAATTTGTTAAAGCCAAGAGCTCCTATGGAATGAAGTTAGGTGGCGGGA--GTGGGTGGGGCATTGAGTAGTAAGATCGTCCTTATAATAGAGATGCCGCTCTTGCAGATATTGACAGCTATCGGGCCCAAAAAAATTGTTACCAAACATTGGAAAGACAAGATATGAGCAACTTCTGATTGCTGCAGTCTCAAATATCAAGAAATACCATTATCCTCAGGACAATGaatagacaatcaaaaaagactcacagactagattagctgtcatgtatcaccaaacagggactggatccttgtcaaacaccacccaacagagattgtccccagaactt i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11231919 1299 + 72422247 CTTAAGATAATTGGGGCAGTAATCTCTTTAAAGTTTTAGAGACTTAATTTATCTTTTCACTCCACTGGAAGAGTATGCCAATTGGTTTCATAAGAAAATATATTTATAAATTAGAAAATTTCTTTCCACCAATCTAGGGTGCATTCAAAAGCAAATAATTGCATTAAGTAACATCTTTTAAGGTGAAAACAGATGCAATGGTATCTATTAACAATGCTTATCAGTAAGGGAAACAAACTGAAAAAATGAACATCATTAGATCCTTGGAAAACCCTCACTGCTGAAAATCTGAGTGATTCGGTGATACCCTTTTGAGTCTGGCAGG--GCATTCTCTCTCTGGAGCATATAAAAGTGAGTAAATCATTTCTTTTCATCCATTTTCATTAAGAGCTGAACTTCCTTAATTTTCTGGAGATTATTAAATTTGATTTGTggccaggaggagtggcttatgcatgtaatcctagcactttgggaggccaa-gtgggcagatctcttgagttcaggagttcgaggccagcctggccaacattgtgaaaccctatctctactaaaaacacaaaaattagccaggcatggtgttgcatccctgtaatcccagctactcaggaggctgatgcacaagaattgcttgaacccaggaggccaaggctgcagtgagccaagatcatgccactgcactccagctttggtgacagagctcaactctgtcttaagcaaaaaaa-----TTTTGATTTGTATAGTTGTGAGAAGTGCTTATGTTGCTGACTCCATTGCTTATTTGTGATCATA-------------TAAATCTCTTTTCTCCTTTCTGTAGTGTGATTTAACCTTAATCCTTAAAGGACATGT-ATTTCAGCTGGTTAGAGTTTTTTAGCTGGTAGAAACCTGAGTATAC--GAATCAAAGAAAACTGCTCCTTACATGTCACAGACTTAGTTTTATTTCTGCACTAAGATTTCTTTTAGGTACAGTAATTTGTTAAAGCCAAGAGCTCCTATGAAAAGAAGTTCAGTGGTGGGGTTTTGGGGTGGGCATTTAGTAGTAAGATCATCTTTATAATAGAGATGCCACTGTTGAAGATATTGACAGCTATTGGGCCC-CAAAAATTGTTACCAAATGTTGGAAAGACAAAATATGAGCAAGTTCTCATTGCTGCAGTCTCAAATATCAGGAAATACCATTATCCTCAGGACAATGAATAGACAATCAAAAGAGACTCACAGACTAGATCAGCTGTCATGCATCACCAAACAGGGACTGGATCCCTGTCAAACACCACTCAACAGAGATTGCCCTCAGAAATT i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56423410 1276 - 109391073 CTTAAGATAATTGGGGCAGTAATCTCTTGAAAGTTTTAGAGACTTAATTTATCTATTCGCTCCACTGGAAGAGTATGCCAGTTGATTTCATAAGAAAATATATTTATAAATCAGAAAATTTCTTTCCACCAATCTAGGGGGCATTCGAAAGCAAATAATTGTGTTAAGTAACATCGTTTAAGGTGAAAACAGATGCAATGGTATTTATTAACGAGGCTTCTCAGTGAGCGAAACAAACTGAAAAAATGAACATCATTAGATCCTTGGAAAACCCTCACTGCTGAAAATCTGAGTGATTCTGTGATACCCTTTTGAGTCTGGCAGG--GCATTCTCTTTCCAGAGCATATAAAAGTGAGTAAATCATTTCTTTTCATCCATTTCCATTAAGAGCTGAACTTCCTCGATGTGCTGGAGATTATTAAATTTGATTTGTggccaggcgcagtggcttacgcctgcaatcctagcactttgggaggccaaggtgggcagatcacttgagttcaggagttcgaggccagcctggccaacaaggcgaaacccaatctctactaaaaatacaaaaattagcccggcatggtgtcacatgcctgtaatcccagctactcaggatgctgacgcacaagaatcacttgaacccgggaggccaaggctgcagtgagccaagatcgtgccactgcactccagccttggtgacagagcgtgactctgtcttaagcaaaaaaaa----aTTTGATTTGTATAGTTGTGAGAAGTGCTTACGTTGCTGACTCCATTGCTCATTTGTGATCATA-------------TAAATCTCTTTTCCCCTTTCTGTGGTGTGATTTAAACTTAATCCTTAAAGGACATGT-ATTTCAGCTGGTTAGAATTTTTTAGCTAGTAGAAACCTGAGTATAC--GAATCAAAGAAAACTGCTCCTTACCTGCCACAGACTTAGTTTTCTTTCTGTACTAAGATTTCTTTTAGGTATAGTAATTTGTTAAAGCCAAGAGCTCCTATGGAATGAAGTTAGGTGGCGGGA--GTGGGTGGGGCATTGCGTAGTAAGATCGTCTTTATAATAGAGATGCCACTCTTGCAGATATTGACAGCTATCGGGCCC-AAAAAATTATTACCAAACATTGGAAAGACAAGACATGAGCAACTTCTGATTGCTGCAGTCTCAAATATCAAGAAATACCACTATCctcaggacaatgaatagacgatcaaaaaagactcacagactagattagctgtcatgtatcaccaaacagggactggatcctcgtcaaa-----------------------cagaaatt i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128198796 1296 + 229590362 CTTAAGATAATTGGGGCAGTAATCTCTTTAAAGTTTTAGAGACTTAATTTATCTATTCACTCCACTGGAAGAGTATGCCAATTGGTTTCATAAGAAAATATATTTATAAATCAGAAAATTTCTTTCCACCAATCTAGGGGGCATTCAAAAGCAAATAACTGTGTTAAGTAACATCATTTAGGGTGAAAACAGATGCAGTGGTATCTATTAACAATGCTTATCAGTGAGAGAAACAAACTGAAGAAATGAACATCATTAGATCCTTGGAAAACACTCACTGTTGAAAATCTGAGTGATTCTGTGATACCCTTTTGAGTCTGGCAGG--GCGTTCTCTTTCCAGAGCATATAAAAGTGAGTAAATCATTTCTTTTCATCCGTTTTCATTAAGAACTCAGCTTCTTTGATGTTCTGGAGATTATTAAATTTGATTTGTggccacatgcagtggcttaagcatgtaatcctagcactttgggaggccaacgtgggcagatcttttgagttcaggagtccgagaccagcctggccaacatggtgaaaccccatctctactaaaaatacaaaaattagccaggcatggtgtcacatgcctgtaatcccagctactcaggaggctgatgcacacgaatcacttgaacctgggagaccaaggctgcagtgagccaaaatcatgtcactgcactccagccttggtgacagagcgcaactctgtcttaagcaaaaaaaaa----TTTGATTTGTATACTTGTAAGAAGTGCTTATATTGCTGACTCCATTGCTTATTTGTGATTATAAGTGTATAAAGAGAAAATCTCTTTTCTCCTTTCTGCAATGTGACTTAAACTTAATCCTTAAAGGACATGTAATTTCAGCTGGTTAGAGTTTTTTAGCTGGTAGAAACCTGAGTATAC--GAATCAAAGAAAAGTGCTCCTTACATGCCACAGACGTAGTTTTCTTTCTGTACTAAGATTTATTTTA-GTATAGTAATTTGTTAAAGCCAAGAGCTCCTATGGAATGAAGTTAGGTGGGAGGG---------GAACATTGAGTAGTAAGATCATCCTTGTAATAGAGATGCCACTCTTGCAGGTATTGACAGCTATTGGGCCC-AAAAAATTGTTACCAAACATTGGAAAGACAAGATATGAGCAACTTCTCATTGCTGCAGTCTCAAATATCAAGAAATACCATTATCCTCAGGACAATGAATAGACCATCAAAAAAGACTCACAGACTAGATCCGCTG---------ACCAAACAGGGAATGGATCCTTGTCAAACAATACCCAATAGAGATTGTCCTCAGAAATT i rheMac3.chr1 I 8 C 0 s macFas5.chr1 125102814 1292 - 227556264 CTTTAGATAATTGGGGCAGTAATCTCTTTTAAGTTTTAGAGACTTAATTTATCTGTTCACTTCACTGGAAGAGTATTCCAGTTGGTTTCATAAGAAAATATATTTATAAATCAAAAAA-TTCTTTCTACCAAACTAGGGGGCATTTGAAAGCAAATAATTGCATTAAGTAGCATCATTTAAGGTGAAAATAGATGCAATGGTATCTATTTACAATGCTTATCAGTGTGGGAAACAAACTGAAAAAATGAACATTATTAGATCCTTGGAAAACCCTCATT-CTGAAAATCTGAGTGATTCTGTGATACCCTTTTGAGTCTTGTATG--ACATTCTCTTTCTGGAGCACATAAAAGTGAGTAAATCATTTCTTTTTATCCATTTTCATTAAGAGCTGAACTTACTTGATGTTCTGGAGATTATTAAATTTGATTTGTggccaggcgcagtggcttacacctgtaatcctagcactttgggaggccaaggtgggtagatcacttgagttcagaagttcgaggccagcctggccaatatggcaaaaccctatctctactaaaaatacaaaaattagccaggcatggtgtcgcatccctgtaatcccagctactcaggaggctgatgcacaagaatcgcttgaacccaggaggccaaggctgcagtaagccaagatcgtgccactgagctccagacttggtgacagagcgtgactctgtcttaagcaaaaaaaaa-TATTTTGATTTGTATAGTTGTGAGAAGTGCTTATATTGCTGACTCCATTGTTTATTTGTGATCATA-------------TAAATCTCTTTTCTCCTGTCTGTAGTGTGAGTTAAACTTAATCCTTAAAGGACATGT-ATTTCAGCTGGTTAGAGTTGTTTAGCTAGTAGAAACCTGAGTACAC--GAATCAAAGAAAACTGCTCCTTACATGCCACAGACTTAGTTTTCTTTCAGTACTAAGACTTCTTTTA-GTATAGTAATTTGTCAAAGTCAAGAGCTCCTATGGAATGAGGTTAGGTGGGAGGG---------GGGCATTGAGTAGTAAGATCATCTTTATAATAGAGATGCCACTCTTGCAGGTATTGACAGCTATTGGGCCC-CAAAAATTGTTACCAAACATTGGAAAGACAAGATATGAGCAACTTCTGATTACTGCAGTCTCAAATATCAAGAAATACCATTATCCTCAGGACAATGaatagaccatcaaaaaagactcacagactagattagctgtcatgtatcaccaaacagggactggatccttgtcaaacaccacccaacagagattgtccccagaaatt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98612202 1292 - 220367699 CTTAAGATAATTGGGGCAGTAATCTCTTTAAAGTTTTAGAGACTTAATTTATCTATTCACTCCACTGGAAGAGTATGCCAATTGGtttcataagaaaatatatttataaatcagCAAATTTATTTCCACCAATCTAGGGGGCATTCGAAAGCAAGTAATTGCATTAAGTAACATCATTTAGGGTGAAAACAGATGCAATGGTATCTATTAACGATGCTTATCAGTGAGGGAAACAAACTAAAGAAATGAACATCGTTAGATCCTTGGAAAACCCTCACTATTGAAAATCTAAGTGATTCTGTGATACCCTTTTGAGTCTTGCAGGACACATTCTCTTTCCGGAGCCTATAA----GAgtaaatcatttcttttcatccATTTTCATTAACAGCTGAACTTCCCTGATGTTCtggagatttttaaatttgatttgtggccaggtgcagcggcttacgcctacaatcctagcactttgggaggccaaggtgggcagatcagttgagttcaggagttcaaggccagcctggccgacatggcgagaccccatctctactaaaaatacaaaaattagccaggcacggtgtcacatgcctgtaatcccagccactcatgGGGCTGATACAcaagaatcgcgtgaacccgggaggctaagtctgcagtgagccaagatcatgccactgtactccagacttgGTGATAGAGTGCGACTCTgtcttaagcaaaaaaaaa---ttttgatttctGTGGTTGTGAGAAGTGCTTATATTGCTGACTCCATTGCTTATTTGTGATCATA-------------TAAATCTCTTTTCTCCTGTCTGTAGTGTGAGTTAAACTTAATCCTTAAAGGACATGT-ATTTCCGCTGGTTAGAGTTGTTTAGCTAGTAGAAACCTGAGTATACGAGAATCAAAGAAAAGTGCTCCTTACATGCCACAGACTTAGCTTTCTTTCTGTACTAAGATTTCTTTTAGGTATAGTAATTTGTTAAAGCCAAGAGCTCCTATGGAATGAAGTTAGGTGGGAGGG---------G-GCATTGAGTAGTAAGATCAACTTTATAATAGAGATGCCACTCTTGCAGGTATTGACAGCTATTGGGCCC-AAAACATTGTTACCAAACATTGGAAAGACAAGATATGAGCAACTTCTCATTGCTGCAGTCTCAAATATCAGGAAATACCGTTATCCTCAGGACAATGAATAGACAATCAAAAGAGACTCACAGACTAGATCCGCTGTCATGTATCATCAAACAGGGAATGGATCCTTGTCAAACAACACCCAACAGAGATTATCCTCAGAAATT i papAnu2.chr1 C 0 C 0 s chlSab2.chr20_KE148049v1_random 196035 1294 + 1557941 CTTTAGATAATTGGGGCAGTAATCTCTTTTAAGTTTTAGAGACTTAATTTATCTGTTCACGTCACTGGAAGAGTATGCCAGTTGGTTTCATAAGAAAATATATTTATAAATCAGAAAAATTCTTTCCACCAAACTAGGGGGCATTCCAAAGCAAATAATTGCATTAAGTAACATCATTTAAGGTGAAAACAGATGCAATGGTATCTATTAACAATGCTTATCAGTGAGGGAAACAAACTGAAGAAATGAACATTATTAGATCCTTGGAAAACCCTCATT-CTGAAAATCTGAGTGATTCTGTGACACCCTTTTGAGTCTTGCATG--ACATTCTCTTTCCAGAGCATATAAAAGTGAGTAAATCATTTCTTTTCATCCATTTTCATTAAGAGCTGAACTTACTTGATGTTCTGGAGATTATTAAATTTGATTTGTggccaggcgcagtggcttacacctgtaatcctagcactttgggaggccaaggtgggtagatcacttgagttcagaagttcgaggccagcctggccaacatggcaaaaccctatctctactaaaaatacaaaaattagccaggcatggtgtcacatgcctgtaatcccagctactcaggaggctgatacacaagaatcgcttgaacccgggaggccaagtctgcagtgagccaagatcgtgccactgagctccagacttggtgacagagcgtgactctgtcttaagcaaaaaaaaaaTATTTTGATTTGTATAGTAGTGAGAAGTGCTTATATTGCTGACTCCATTGTTTATTTGAGATCATA-------------TAAATCTCTTTTCTCCTGTCTGTAGTGTGATTTAAACTTAATCCTTAAAGGACATGT-ATTTCAGCTGGTTAGAGTTTTTTAGCTGGTAGAAACCTGAGTATAC--GAATCAAAGAAAACTGCTCCTTACATGCCACAGACTTAGTTTTCTTTCAGTACTAAGACTTCTTTTA-GTATAGTAATTTGTCAAAGTCAAGAGCTCGTATGGAATGAGGTTAGGTGGGAGGG---------GGGCATTGAACAGTAAGATCATCTTTATAATAGAGATGACACTCTTGCAGGTATTGACAGCTATTGGGCCC-CAAAAATTGTTACCAAACATTGGAAGGACAAGATATGAGCAACTTCTGATTACTGCAGTCTCAAATATCAAGAAATACCATTATCCTCAGGACAATGaatagaccatcaaaaaagactcacagactagattagctatcatgtatcaccaaacagggactggatccttgtcaaacaccacccaacagagattgtccccagaaatt i chlSab2.chr20_KE148049v1_random C 0 C 0 e calJac3.chr21 50446935 30225 - 50472720 T a score=835671.000000 s hg38.chr1_KI270765v1_alt 48175 316 + 185285 CACTTCATAACATCAAAACCAGAAACCCACACTGATGCCACTGATGGCAGAAAACAATGATGC----------AagaaagagagagagggagatagagaaagGAAGGACTTGCCCAATGACCATACTTAGTATATAAAAGCAAAACAGCTCAATTTCTGCTCATGAGAAC--AAGAACTGAGGGAACAAGAACCAGTGGCTCTAAGGATCCAGGTCTGCACCAGGGGCCTGTTAGGTGCAGGATTCTGTTGGCTCCAATGATGGGTGTCAGATGGATTAATTTTTATGGACATAGCCTCTG-AAAGAAATCAGTCGAGGAATAATACAG s panTro4.chr1_AACZ03149435_random 157212 316 + 173505 cacttcataacatcaaaaccagaaacccacactgatgccactgatggCAGAAAACAATGATGC----------AAGAAAGAGAGAGAGGGAGATAGAGAAAGGAAGGACTTGCCCAATGACCATACTTAGTATATAAAAGCAAAACAGCTCAATTTCTGCTCATGAGAAC--AAGAACTGAGGGAACAAGAACCAGTGGCTCTAAGGATCCAGGTCTGCACCAGGGGCCTGTTAGGTGCAGGATTCTGTTGGCTCCAATGATGGGTGTCAGATGGATTAATTTTTATGGGCATAGCCTCTG-AAAGAAATCAGTCGAGGAATAATACAG i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11233218 308 + 72422247 CACTTCATAACATCAAAGCCAG--------ACTGATGCCACTGATGGCAGAAGACAATGATGC----------GAGAAAGAGAGAGAGGGAGATAGAGAAAGGAAGGACTTGCCCAATGACCATACTTAGTATATAAAAGCAAAAGAGCTCAATTTCTGCTCATGAAAAC--AAGAATCAAGGGAACAAGAGCCAATATCTCTAAGGATCCAGGTCTGCACCAGGTTCCTGTTAGGTGCAGGATTCTGTTGGCTCCAATGATGGGTGTCAGACGGATTAATTTTTATGGACATAGCCTTTG-AAAGAAATCAGTGGAGGAATGATACAG i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56424686 312 - 109391073 cacttCATAACATCAAAACCAGAAACCCACCCTGATGCCACTGATGGCAGAAAACAATGATGC--------------AagagagagagagagatagagaaagGAAGGACTTGCCCAATGACCATACTTAGTATATAAAAGCAAAACAGCTCAATTTCTGCTCATGAAAAC--AAGAACCGAGGGAACAAGAGCCAATAGCTCTAAGGATCCAGGTCTGCACCAGGGGCCTGTTAGGTGCAGGATCCTGTTGGCTCCAATGATGGGTGTCAGATGGGTTAACTTTTATGGACATAGCCTCTG-AAAGAAATCAGTCGAGGAATAATACAG i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128200092 316 + 229590362 CACTTAATAACATCAAAACCAGAAACGCACACTGATGCCACTGATGGCAGAAAACAATGATGC----------gagaaagagagagagggagatagagagagGAAGGACTTGCCCAGTGACCATACTTAGTATATAAAAGCAAAAGAGCTCAACTTCTGCTCATGAAAGC--AAGAACCGAGGGAACAAGAGCCAGTATCTCTAAGGATCCAGGTCTGCACCAGGGGCCTGTTAGGTGCAGGATTCTGTTGGCTCCAATGATGGGTCTCAGATAGACTAATTTTTATGGACATAGCCCCTG-AAAGAAATCAGTCGAGGAATAATATAG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 125104106 321 - 227556264 cacttcataacatcaaaaccagaaacccacactgatgccactgatggCAGAAAACAATGATGCAAAAATgagagagagagaaagagagagagggagatagagGAAGGACCTGCCCAGTTACTATGCTTAGTATATAAAAGCAAAAGAGATCAAGTTTTGCTCATGAACACAGAAGAACCGAGGGAACAAGAGCCAATAGCTCTAACGATCCAGGTCTGCACCAGTGTCCTG--------AGGATTCTGTTGGCTCCAATGATGGGTCTCAGATGGGCTAATTTTTATGGACATAGTATCTGAAAAAAAATCAGTCAAGAAATAATATAG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98613494 316 - 220367699 CACTTCATAACATCAAAACCAGAAACGCACACTGATGCCACTGATGGCAGAAAACAATGAtgc----------cagaaagagagagagggagatagagagagGAAGGACTTGCCCAATGACCATACTTAGTATATAAAAGCAAAAGAGCTCAACTTCTGCTCATGAAAGC--AAGAACCGAGGGAACAAGAGCCAGTATCTCTAAGGATCCAGGTCTGCACCAGGGGCCTGTTAGGTGCAGGATTCTGTTGGCTCCAATGATGGGTCTCAGATGGACTAATTTTTATGGACATAGCCTCTG-AAAGAAATCAGTCGAGGAATAATATAG i papAnu2.chr1 C 0 C 0 s chlSab2.chr20_KE148049v1_random 197329 321 + 1557941 cacttcataacatcaaaaccagaaacccacactgatgccactgatggCAGAAAACAATGATGCAAAAATgagagagagagaaagagaaagagggagatagaggaagGACCTGCCCAGTTACTATGCTTAGTATATAAAAGCAAAAGAGATCAAGTTTTGCTCATGAACACAGAAGAACCGAGGGAACAAGAGCCAATAGCTCTAAGGATCCAGGTCTGCACCAGGGGCCTG--------AGGATTCTGTTGGCTCCAATGATGGGTCTCAGATGGGCTAATTTTTATGGACATAGTCTCTGAAAAAAAATCAGTCAAGAAATAATATAG i chlSab2.chr20_KE148049v1_random C 0 C 0 s calJac3.chr21 50416710 295 - 50472720 CACTTCATAACATCAAAACCAGAAACTTACAGTGATGCCACTGGTGGCAGAAAACAACAATGC----------AAACATGAGAGAGAGAGAGG--------GAAAAGACCTGTCCAATGATTCTACTTAGTATAT-AAATCAAAAGA-TTCAATTTCTGCTCATGAAAACAGAAGAACTGAGGGAACAAGAGCCAATAGCGCTAAGGATCCAGGT-------------CTGTTAACTGCAGGATTCTGTCGGCTTTAGTGATGTTCCTCAGATGGGCTGATTTTTATGGACATAGCCTCTG-AAAGAAAACAGTCAGGAAACAATATAG i calJac3.chr21 T 30225 I 13464 a score=407725.000000 s hg38.chr1_KI270765v1_alt 48491 174 + 185285 AGACACTTGTCTGCATGCTCATTCTCCATCAATATAGAAGAGGAACTGGCATTAGATTGTGTTCATCAAATAAAAGTAAAATCAACATTTATAAAGAAAAGAGGAAAGGGGAGGAG-AAAAAAATGACTGGGACCATTGTGATTTTGCTCCCTTTGGATAAGCAACTTGGCAGAA s panTro4.chr1_AACZ03149435_random 157528 174 + 173505 AGACACTTGTCTGCATGCTCATTCTCCATCAATATAGAAGGGGAACTGGCATTAGATTGTGTTCATCAAATAAAAGTAAAATCAACATTTATAAAGAAAAGAGGAAAGGGGAGGAG-AAAAAAATGACTGGGACCATTGTGATTTTGCTCCCTTTGGATAAGCAACTTGGCAGAA i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11233526 174 + 72422247 AGACACTTGTCTGCATGCTCATTCTCCATTAATATAGAAG-GAAACTGGCATTAGATTGTTTTCATCAAATAAAAGTAAAATCAAGATTTATAAAGCAAAGAGGAAAGGAGAGGAGAAAAAAAATGACTGGGACTATTGTGATTTTGCTCCCTTTGGATAAGCAACTTGGCAGAA i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56424998 174 - 109391073 AGACACTTGTCTGCATGCTCATTCTCCATTAATATAGAAGGGAAACTGGCATTAGATTGTGTTCATCAAATAAAAGTAAAATCAACATTTATAAAGAAAAGAGGAAAGGGGAGGAG-AAAAAAATGACTGGGACCATTGTGATTGTGCTCCCTTTGGATAAGCAACTTGGCAGAA i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128200408 174 + 229590362 AGACACTTATCTACATGCTCATTCTCTATTAATATAGAAGGGAAACTAGCATTAGATTGTTTTCATCAAATAAAAGTAAAATCAAGATTTATAAAGAAAAGAGGAAAGGGGAAGAG-AAAAAAATGACTGGGACTATTGTGATTTTGCTACCTTTGGATAAGCAACTTGATAGAA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 125104427 174 - 227556264 AGACACTTATCTGCATGCTCATTCTCCATTACTATAGAAGGGAAACTGGCATTAGATGGTTTTCATCAAATAAAATTAAAATCAAGATTTATAAAGAAAAGAGGAAAGGGGAGGAG-AAACAAATGACTGGGACCATTGTGACTTTGCTCCCTTTGGATAAGCAACTTGGCAGAA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98613810 174 - 220367699 AGACACTTATCTGCATGCTCATTCTCCATTACTATAGAAGGGAAACTGGCATTAGATTGTTTTAATCAAATAAAAGTAACATcaagatttataaagaaaagaggaaagggtaGGAG-AAACAAATGACTGGGACCATTGTGATTTTGCTCCCTTTGGATAAGCAACTTGGCAGAA i papAnu2.chr1 C 0 C 0 s chlSab2.chr20_KE148049v1_random 197650 174 + 1557941 AGACACTTATCTGCATGCTCATTCTCCATGATTATAGAAGGGAAACTGGCATTAGATGGTTTTCATCAAATAAAATTAAAATCAAGATTTATAAAGAAAAGAGGAAAGGGGAGGAG-AAAAAAGTGACTGGGACCATTGTGATTTCGCTCCCCTTGGATAAGCAACTTGGCAGAA i chlSab2.chr20_KE148049v1_random C 0 C 0 e calJac3.chr21 50417005 13464 - 50472720 I a score=929997.000000 s hg38.chr1_KI270765v1_alt 48665 330 + 185285 AGCTATCAAAGAGGTCACTATGACCTGTCTTCTCCGGACCAGTGTGACTTGGTCACCACAGCAAACAATTACAggctgggcacagtggctcatgcctgtaatatcgacactttgggaggcggag-tgggcggatcacttgagctcgcaagttggagagtagcctgggcaacatgatgtaactctgtctgtacaaaaaatacaaaatttagccaggaatggtggtgtatgctagtagtcccagctactcaggaggctgaggtgggaggatcacctgagcctgggaaggttcaggctgcagtgaaccatgattacaccactgca------------------------------------ctccagcct s panTro4.chr1_AACZ03149435_random 157702 330 + 173505 AGCTATCAAAGAGGTCACTATGACCTGTCTTCTCCGGACCAGTGTGACTTGGTCACCACAGCAAACAATTACAggctgggcacagtggctcatgcctgtaatatcgacactttgggaggcggag-tgggcggatcacttgagctcgcaagttgaagagtagcctgggcaacatgatgtaactctgtctgtacaaaaaatacaaaatttagccaggcatggtggtgtctgctagtagtcccagctactcaggaggctgaggtgggaggatcacctgagcctaggaaggttcaggctgcagtgaaccatgattacaccactgca------------------------------------ctccagcct i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11233700 331 + 72422247 AGCTATTAAAGAGGTCACTATCACCTGTCTTCTCTGGACCAATGTGACTTGGTCATCACAGGAAACAATTACAggctgggcacagtggcttatgcctgtaatatcaacactttgggaggctgagatgggcggatcacttgagctcatgagttggagagcagcctgggcaacatgatgaaactctgtctgtacaaaaaatacaaaatttagctaggcatggtggtgtatgctagtagtcccagctactcaggaggctgaggtgggaggatcacctgagcctggggagattgaggctgcagtgacccgtgattacaccactgca------------------------------------ctccagcct i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56425172 335 - 109391073 AGCTATCAAAGAGGTCACTATGACCTGTCTTCTCCGGACCAATGTGACTTGATCACCACAGGAAACAATTACAggctgggcacagtggctcatgcctgtaatatcaacactttgggaggctgaggtgggcggatcacttgagctcacaagttggagagtagcctgggcaacatgatgtaactctgtctgtacaaaaaatacaaaatttagccaggcat--------------------------------gaggctgatgtgggaggatcacctgagcctggggaggttcaggctgcagtgcaccatgattacaccactgcatggtctccactggaggctgcagtgaaccatgattacctccagcct i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128200582 331 + 229590362 AGCTATCAAAGAGGTCACTGTGACCTGTCTTCTCCAGACCAATGTGACTTGGTCACCACAGGAAACAATTACAggctgggcacagtggctcatgcctgtaatatcaacactttgggaggcggaggccggaggatcacttgagctcacgagttggacagcaccctaggcaacatgacgaaactcggtcggtacaaaaaatacaaaatttagccaggcatggaggtgtatgctagtagtcccagctactcaggaggctgaggtgggaggatcacctgagcctgggaaggttgaggctgcagtgaaccatgattacacccctgca------------------------------------ctccagcct i rheMac3.chr1 C 0 I 44 s macFas5.chr1 125104601 331 - 227556264 AGCTATCAAAGAGGTCACTGTGACCTGTCTTCTCAGGACCAATGTGACTTGGTCACCACAGGAAACAATTACAggctgggcacagcggctcatgcctgtaataccagcactttgggaggcagaggcgggcatatcacttgagttcacgagttggagagcagcctaggcaacatgatgaaactctgtctgtacaaaaaatacaaaatttagccgggcatggtggtgtatgctagtagttccagctactcaagaggctgaggtgggaggatcacctgagcccggggaggttgaggctgcagtgagccatgattacaccactgta------------------------------------ctccaggtt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98613984 331 - 220367699 AGCTATCAAAGAGGTCACTGTGACCTGTCTTCTCTGGACGAATGTGACTTGGTCACCACAGGAGACaattacaggctgggcacagtggctcatgcctgtaatatcaacactttgggaggcggaggccggaggatcacttgagctcatgagttggagagcagcctgggcaacatgatgaaactctgtcggtacaaaaaatacaaaatttagccaggcatggaggtgtatgctagtagtcccagctactcaggaggctgaggtgggaggatcacctgagcccaggaaggttgaggctgcagtgaaccatgattacacccctgca------------------------------------ctccagcct i papAnu2.chr1 C 0 C 0 s chlSab2.chr20_KE148049v1_random 197824 331 + 1557941 AGCTATCAAAGAGGTCACTGTGACCTGTCTTCTCAGGACCAATGTGACTTGGTCACCACAGGAAACAATTACAggctgggcacagtggctcatgcctgtaataccagcactttgggaggcagaggcgggcgtatcacttgagctctcgagttggagagcagcctaggcaacataatgaaactctgtctgtacaaaaaatacaaaatttagccaggcatggtggtatatgctagtagtctcagctactcaggaggctgaggtgggaggatcacctgagcccggggaggttgaggctgcagtgagccatgattacaccactgta------------------------------------ctccaggtt i chlSab2.chr20_KE148049v1_random C 0 C 0 s calJac3.chr21 50430469 331 - 50472720 AGCTATCAAAGAGGTCACTGTGACCTGTCTTCTCTGGACCCATGTGATTTGGTCACCACAGGAAACAATTACAggctgagcacagtggctcatgcccctaacaccaacacttcgggaggctgaggcaggcagagctcttgagctcaggagctggacagtagccggggcaacttgatgaaactctgtctgttaaaaagatacaaaaattagccaggcatggtggtgcatgctggtagatctagctactcaggaggctgaggtgagaggatcacctgagcctgaggaggttgaggccgcattgagccatgatcatgccactgca------------------------------------ctccagcct i calJac3.chr21 I 13464 C 0 a score=132295.000000 s hg38.chr1_KI270765v1_alt 48995 63 + 185285 ggatgacagagtaagaccatgtctcta---aaataaaTTAAGTTTGAAAAAGAAACAGggccaggc s panTro4.chr1_AACZ03149435_random 158032 63 + 173505 ggatgacagagtaagaccatgtctcta---aaataaaTTAAGTTTGAAAAAGAAACAGggccaggc i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11234031 66 + 72422247 gggtgacagagtaagaccatgtctcTCAATAAATAAATTAAATTTGAAAAAGAAACAGggccaggc i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56425507 66 - 109391073 ggatgacagagtaagaccatgtctctaaataaataaaTTAAGTTTGAAAAAGAAACAGggccaggc i nomLeu3.chr12 C 0 C 0 s macFas5.chr1 125104932 66 - 227556264 gggtgacagagtgagaccatgtctcaaaacaaataaaTTAAATTTGAAATAGAAACAGggccaggc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98614315 66 - 220367699 gagtgacagagtaagaccatgtctctaaataaatgaattaaatttgaaaaagaaacaaggccaggc i papAnu2.chr1 C 0 I 457 s chlSab2.chr20_KE148049v1_random 198155 61 + 1557941 gggtgacagagtaagaccatgtctcaaaacaaa-----taaaTTTGAAATAGAAACAGggccaggc i chlSab2.chr20_KE148049v1_random C 0 C 0 s calJac3.chr21 50430800 61 - 50472720 gggtggcagagtaagactatgtctcaaaataaa-----taaaTTTTACAAAGAAACAGggccaggc i calJac3.chr21 C 0 C 0 e rheMac3.chr1 128200913 44 + 229590362 I a score=244283.000000 s hg38.chr1_KI270765v1_alt 49058 158 + 185285 acggtggctcacacatataatcccagcactctgggaggccaagatgggagtatcacttgagctc---aggagttcgagaccagcctgggcaacatagtgagacctcatctctaaagaatacatatatat---ttttaaataaac---------atatataataaaatatatac s panTro4.chr1_AACZ03149435_random 158095 158 + 173505 acggtggctcacacatataatcccagcactctgggaggccaagatgggagtatcacttgagctc---aggagttcgagaccagcctgggcaacatagtgagacctcatctctaaagaatacatatatat---ttttaaataaac---------atatataataaaatatatac i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11234097 154 + 72422247 acggtggctcacacatataatcccagcactccgggaggacaagatgggagtatcacttgagctc---aggagttcgataccagcctgggcaacatagtgagacctcatctctaaaaaatac----atat---ttttaaataaat---------atatataataaaatacatac i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56425573 158 - 109391073 acggtggctcacacatataatcccagcactctgggaggccaagatgggagtatcacttgagctc---aggagttcgagaccagcctgggcaacatagtgagacctcatctctaaaaaatacatatatat---ttttaaataaac---------atatataataaaatatatac i nomLeu3.chr12 C 0 C 0 s macFas5.chr1 125104998 158 - 227556264 acagtggctcacagatataatcccagcactctgggaggcc-atatgggaatatcacttgagctc---aggagttcgagaccagcctaggcaacatagtgaggcctcatctct--aaaacaaatatatat---atataaatatatata------atatataatcaaatatatac i macFas5.chr1 C 0 C 0 s chlSab2.chr20_KE148049v1_random 198216 160 + 1557941 acagtggctcacagatataatcccagcactctaggaggcc-atatgggaatatcacttgagctc---aggagtttgagaccagcctaggcaacatagtgaggcctcatctctaaaaaatatatatatat---atataaatatatata------atatataatcaaatatatac i chlSab2.chr20_KE148049v1_random C 0 C 0 s calJac3.chr21 50430861 173 - 50472720 ctggtgacttgcacatataatcccagaactttgggaggccaaggtgggagtatcacttgagctcaggaggagttcaagaccagcctaggcaacgtagtgagacttcctctctaaaaaatacatgtatatatattttaaataagtatatataatatatataataaaatacatac i calJac3.chr21 C 0 I 293 e rheMac3.chr1 128200913 44 + 229590362 I e papAnu2.chr1 98614381 457 - 220367699 I a score=198439.000000 s hg38.chr1_KI270765v1_alt 49216 159 + 185285 tatattttattatacataatatataattgtatatatttattatcatataattttaat-aaaatatgtatatattttat--tatgtata-ataAAATAAAA----AGAAACAATTACAGATGTTGGAGGACTTT-AAAATATCTCGgccaggtgcagtggttcaggctg s panTro4.chr1_AACZ03149435_random 158253 157 + 173505 tatattttattatacataatatataattgtatatatttattatcatataattttaat---aatatgtatatattttat--tatgtata-ATAAAATAAAA----AGAAACAACTACAGATGTTGGAGGACTTT-AAAATATCTCAgccaggtgcagtggttcaggctg i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11234251 153 + 72422247 tatattttattatacataatatataattgtatgtat---ttatcttataatact------aatatgtatatattttattatatatata-ATAAACTAAAA----AGCAACAATTACAGATATTGGAGGACTTT-AAAATATCtcagctaggtgcagtggttcaggctg i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56425731 157 - 109391073 tgtattttgttatacataatatataattgtatatatttattatcatgtaattataataaaaatatgtatatattttat--tatatata-ataAAATAAAA-------AACAATTACAGATGTTGGAGGACTTT-AAAATATCTCAGGcaggtgcagtggttcaggctg i nomLeu3.chr12 C 0 C 0 s macFas5.chr1 125105156 163 - 227556264 -atatattattatacataatatataattatatatatTTATGTTCatataattataataaaaatatgtatatatttgattatatataAA-ATACAATAAAAA---AGAAATAATTACAGATGTTGGAGGACCCTAAAAATATCtcagccaggtacagtggttcaggctg i macFas5.chr1 C 0 C 0 s chlSab2.chr20_KE148049v1_random 198376 163 + 1557941 -gtattttattatacataatatataattatatatatttatgttcatataattataataaaaatatgtatatatttgattatatataAA-ATACAATAAAAA---AGAAATAATTACAGATGTTGGAAGACCTTAAAAATATCtcagccaggtacagtggttcaggctg i chlSab2.chr20_KE148049v1_random C 0 C 0 s calJac3.chr21 50431327 148 - 50472720 tatattttattataCACA--ATGCAATCatatatacttact-----------------tatatatttatatattttattatatatacacatattatatatatatataAACACTTGCAGATGTTGAAGGACTTT-AAAGTATTTCAgctgggtgcaatggttcaggtcg i calJac3.chr21 I 293 C 0 e rheMac3.chr1 128200913 44 + 229590362 I e papAnu2.chr1 98614381 457 - 220367699 I a score=1014217.000000 s hg38.chr1_KI270765v1_alt 49375 488 + 185285 gtaat-cccggcactttgggagactgaggcaggaggatcacttgagcccaggaggctgaggcttacagtgaactatgatcatgc----cactgcactgcaacctgggtaacagagtaagactctatctcaaaaaataaaaTAACATGTCTTAGAAGTTTAGCTGTCCATCCTATGCAACTGAATATCCGTGTGTAATGTCCACCATGTCCTTCTGTTTTACCTCCCCCTTACTTAAACCGGAAAGGCACTTGTCCCCATATTAGAATATCATTGGCACATggccgggcatggtggctcatgactgtaataccagcacgttgggaggctgttcaggagtttgagaccagcctggccaacaagatgaaaccttgtctctactaaaaatacaaaaattagccgggcgtggtggtgcaggcttgtaagctgagatcactccactgcactccagcctgggcgacagagcaagattgtgtctcaaaaaaaaaaaaaaaa--- s panTro4.chr1_AACZ03149435_random 158410 485 + 173505 gtaat-cctggcactttgggagactgaggcaggaggatcacttgagcccaggaggctgaggcttacagtgaactatgatcatgc----cactgcactgcaacctgggtaacagagcaagactctatctcaaaaaataaaaTAACATGTCTTAGAAGTTTAGCTGTCCATCCTATGCAACTGAATATCCATGTGTAATGTCCACCATGTCCTTCTGTTTTACCTCCCCCTTACTTAAACCGGAAAGGCACTTGTCCCCATATTAGAATATCATTGGCACATggccgggcatggtggctcatgactgtaataccagcatgttgggaggctgttcaggagtttgagaccagcctggccaacaagatgaaaccttgtctctactaaaaatacaaaaattagctgggcgtggtggtgcaggcttgtaagctgagatcacttcactgcactccagcctgggcaacagagcaagattgtgtctc---aaaaaaaaaaaaa--- i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11234404 482 + 72422247 gtaat-cccagcactttgggagactgagccaggaagatcacttgagcccaggaagctgaggc-tacagtgaacaatgatcgtgc----cactgcactgcaacctggacaacagaacaagaccctatctcaaaaaatagaataaaaTGTCTTAGAAGTTTAGCTGTCCATCCTATGCAACTGAATATCTGTGTGTAATGTCCACCATGTCCTTCTGTTCTACCTCCCCCTCACTTAAGCCAGAAGGGCATTTGTGCCCTTATTAGAATATCACTGGCACATggccgggcgtggtggctcatgactgtaataccagtaagttgggaggctggtcaggagatggagaccagcctggccaacatgatgaaactgtgtctctactaaaaatacaaaaattagccgggcatggtggtgcaggcttgtaagctgagatcactccactgcactccagcctgggtgacagagcaaaactgtgtctc---caaaaaaaaaa----- i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56425888 489 - 109391073 gtaatacccagcactttgggagactgaggcaggaggatcacttgagcccaggaggctgaggcttacagtgaactatgatcatgc----cactgcactgcaacctgagtaacagagcaagacactatctcaaaaaataaaataaCATGTCTTAGAAGTTTAGCTGTCCATCCTATGCAACGGAATATCTGTGTGTAATGTCCACCATGTCCTCCTGTTGTACCTCCCCCTTACTTAAACCAGGAAGGAACTTGTCCCCTTATTAGAATATCATTGGCACACggccgggcgtggtggctcatgacggtaataccagcatgttgggaggctggtcaggagtttgagaccagcctggccaacaagatgaaaccttgtctctactaaaaatacaaaaattagccgggcgtggtggtgcaggcttgtaagctgagatcactccactgcactccagcctgggcgaaagagcaagattgtgtctaaaaaaaaaaaaaaaaa--- i nomLeu3.chr12 C 0 C 0 s macFas5.chr1 125105319 477 - 227556264 gtaat-ccgagcactttgggagactgaggcaggaggatcacttgagcccaggaggctgaggct--------actatgatcgtgt----tactgcactgccacctgggtagcagagcaagaccctatctcaaaaagtaaaataaaaTGTCTTAGAAGTTTAGCTGTCCATCCTATGCAGCTGAATATCTGTGTGTAATGTCCACTATGTCCTCCTTTTGTACCTCCCCCTTTCTTAAGCCAGGAAGGCACTTGTCCCCTTATTAGAATATCATTGGCACATggccgggcatggtggctcatgactgtaataccagcatgttgggaggctggtcagcagtttgagaccagcctggccaacatgatgaaacgttttctctactaaaaatacaaaaattagccaggtgtggtggtgcagggttgtaagctgagatcactccaccgcactccagcctgggtgacagaacaagactgtatctc---aaaaaaaaaaaaa--- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98614838 470 - 220367699 gtggt-cccagctactccggaggctgaggcaggagaatggcgtaaacccgggaggcggagctt-gcagtgagctgagatcctgc----cactgcactccagcctgggcgacagagccagactcagtctcaaaaaaaaaa--------------aagtttagctgTCCATCCTATGAAACTGAATATCTGTGTGTAATGTCCACCATGTCCTCCTGTTGTATCTCCCCCTTACTTAAGCCAGGAAGGCATTTGTCCCCTTATTAGACTATCACTGGCAAATGgtcgggcatggtgtctcatgacTGTAATATCAGCATGTTGAGAGgctggtcaggagtttgagaccagcctggccaacatgatgaaactttgtctctactaaaaatacaaaaattagccaggcgtggtggtgcagtgttgtaagctgagatcgctccactgaactccagcccgggtgacagagcaagactgtgtctc---aaaaaaaaaaaaa--- i papAnu2.chr1 I 457 C 0 s chlSab2.chr20_KE148049v1_random 198539 477 + 1557941 gtaat-ccgagcactttgggagactgaggcaggaggatcacttgagcccaggaggctgaggct--------actatgatcgtgt----tactgcactgccacctgggtaacagagcaagaccctatctcaaaaagtaaaataaaaTGTCTTAGAAGTTTAGCTGTCCATCCTATGCAGTTGAATATCTGTGTGTAATGTCCACCATGTCCTCCTTTTGTACCTCCCCCTTACTTAAGCCAGGAAGGCACTTGTCCCCTTATTAGAATATCATTGGCACATggccaggcatggtggctcatgacagtaataccagcatattgggaggctggtcagcagtttgagaccagcctggtcaacatgatgaaaccgtgtctctactaaaaatacaaaaattagccaggtgtggtggtgcaggcttataagctgagatcactccactgtactccagcgtgggtgacagagcaagactgtgtctc---aaaaaaaaaaaaa--- i chlSab2.chr20_KE148049v1_random C 0 C 0 s calJac3.chr21 50431475 486 - 50472720 gtaat-cccagcactttgggagaccgaggcaggaggatcacttgagcccaggcagctgaggct-acactgaactatgaccatgccactcactgtgctgcagcctgggcaacagagcaagactgcatctcaaaaaataaaataaaaTGTCTTAGAAGTTTAGCTGTCCATCGTGCGCAACAGAATATCTGTGTGTAATGTCCACCATATCCTTCTGCTGTGCCTCTCCCTCAGTTAAGCCAGAAAGGTACTTGTCCCC---TTAGAATGTCATTGGCATATggccgggcttggtggctccttactgtaattccagcacgttgggaggctggtccagagtttgagaccagcctggccaacatgataaaaccccgtctctactacaaatacaaaaattagctgggtatggtggtgcaggctcgtaagctgagatcattccactgcactccagcctcagcaacagagcaagactg--tctc---aaaaaaaaaGTAAGga i calJac3.chr21 C 0 I 295 e rheMac3.chr1 128200913 44 + 229590362 I a score=13911.000000 s hg38.chr1_KI270765v1_alt 49863 14 + 185285 aaaa---GGAAAGAAAA s panTro4.chr1_AACZ03149435_random 158895 14 + 173505 aaaa---GGAAAGAAAA i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11234886 8 + 72422247 ---------aaTGGAAA i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56426377 14 - 109391073 agaa---AGAAAGAAAA i nomLeu3.chr12 C 0 C 0 s macFas5.chr1 125105796 14 - 227556264 aaaa---ggaaagaaaa i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98615308 17 - 220367699 aaaaaaggcaaagaaaa i papAnu2.chr1 C 0 C 0 s chlSab2.chr20_KE148049v1_random 199016 14 + 1557941 aaaa---ggaaagaaaa i chlSab2.chr20_KE148049v1_random C 0 C 0 e calJac3.chr21 50431961 295 - 50472720 I e rheMac3.chr1 128200913 44 + 229590362 I a score=258555.000000 s hg38.chr1_KI270765v1_alt 49877 113 + 185285 GAATATCATGGGCACATGTATAGAAAGTTTGTTAggccaggtgcagtggttcacacctgaaatcccagcactttgggaggccaaggcaggcaaatctcttgagcccagaagtt s panTro4.chr1_AACZ03149435_random 158909 113 + 173505 GAATATCATGGGCACATGTATAGAAAGTTTGTTAggccaggtgcagtggttcacacctgaaatcccagcactttgggaggccaaggcaggcaaatctcttgagcccagaagtt i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11234894 113 + 72422247 GAATATCATGGGCACATGTATAGAAAGTTTGTTAggccgggtgcagtggttcacacctaaaatcccagcacattgggaggccgaggcaggcgaatctcttcagcccagaagtt i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56426391 113 - 109391073 GAATATCATGGGCACATGTATAGAAAGTTTGCTAggccgggtgcagtggtacacaccagaaatctcagcactttgggaggccaaggcaggcaaatctcttgagcccagaagtt i nomLeu3.chr12 C 0 C 0 s macFas5.chr1 125105810 113 - 227556264 gaaTATTATGGGCACATGTATAGAAAGTTTGTTAggccaggtgcggtggttcacacctggaatcccagcactttgggaggctgaggcaggtgaatctcctgagcccagaagtt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98615325 113 - 220367699 gaatatCATGGGCACATGTATAGAAAGTttgttaggctgggtgcagtggttcacacctggaatcctagcactttgggaggccaaggcaggtgaatctcttgagcccagaagtt i papAnu2.chr1 C 0 C 0 s chlSab2.chr20_KE148049v1_random 199030 113 + 1557941 gaaTATCATGGGCACATGTATAGAAAGTTTGTTAggccgggtgcagtggttcacacctgaaatcccagcactttgggaggctgaggcaggtgaatctcctgagcccagaagtt i chlSab2.chr20_KE148049v1_random C 0 C 0 s calJac3.chr21 50432256 112 - 50472720 gaaTATCACGGGCCAATATATAGAGAATTTCCTAggccatgtgcagtggttcac-cctgaaatcccagcactttgggaggctgaggcaggcggatctcttgagcccagactct i calJac3.chr21 I 295 I 23 e rheMac3.chr1 128200913 44 + 229590362 I a score=77046.000000 s hg38.chr1_KI270765v1_alt 49990 46 + 185285 ggagctcctgggggcaacctgggcaacagagcaagaccccatctct------------------- s panTro4.chr1_AACZ03149435_random 159022 55 + 173505 ggagctcctggggacaacctgggcaacatggcaagaccctatctct----------aaaaaaaaa i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11235007 55 + 72422247 ggagttcctggggccaacctgggcaacatagcaagaccctatctct----------aaaaaaaaa i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56426504 55 - 109391073 ggagctcctgggggtaacctgggcaacatagcaagaccctatctca----------aaaaaaaaa i nomLeu3.chr12 C 0 C 0 s macFas5.chr1 125105923 65 - 227556264 ggagctcctggggccaacttaggcaacattgcaagaccctctctctaaaaaaaaaaaaaaaaaaa i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98615438 55 - 220367699 agagcTCCTGGagccaatctgggcaacatagcaagatcctatctct----------aaaaaaaaa i papAnu2.chr1 C 0 C 0 s chlSab2.chr20_KE148049v1_random 199143 52 + 1557941 ggagctcctggggccaacctgggcaacattgcaagaccctctctct-------------aaaaaa i chlSab2.chr20_KE148049v1_random C 0 C 0 e calJac3.chr21 50432368 23 - 50472720 I e rheMac3.chr1 128200913 44 + 229590362 I a score=1181548.000000 s hg38.chr1_KI270765v1_alt 50036 565 + 185285 aaaaaaa----aagttggatttgatggtgcacacct---------gtggttccagctcttccggaggatcactagtgccagagtggcagg----ggcggtgagtttgcagtgagctgagatcac-gccactgcactccatcttgggtgacagagtgacacctagtctcaaaacaaaaa--GTAGGGGAGGGGAGAAAATTTGTTGTGTCAGCAAGTAAATGAAGAAAGAGACATTATTAGAGTTGAGAAATAAACTGGAATGTGATTTGGTACCTTTCCCACAGAAGATAAGTTTGCTAAATGTGCTGAAATTAGAAGCATTGTATAAggcccggtgcagtggctcatgcctgtaatcctagcactttggg-agacctcggaggtgcccgagcccaggagtttggggaccaccatgggcaacataatgaaaccctttctctacaaaaaatacaaaagttagctaggcCTTTCGGATGCGACAACTAATTGTGCCACAGAGACACAACCCGAGTG-----GCTTAGGACTCTGGGAAGATATAATCTCCCCCGTTTATCTAGTGATCGATAATGCATGAACGCTTTAAAAGC s panTro4.chr1_AACZ03149435_random 159077 565 + 173505 aaaaaaa----aagctggatttgatggtgcacacct---------gtggttccagctcttccggaggatcactagtgccagggtggcagg----ggcagtgagtttgcagtgagctgagatcac-gccactgcactccatcttgggtgacagagtgacacctagtctcaaaacaaaaa--GTAGGGGAGGGGAGAAAATTTGTTGTGTCAGCAAGTAAATGAAGAAAGGGACATTATTAGAGTTGAGAAATAAACTGGAATGTGATTTGGTACCTTTCCCACAGAAGATAAGTTTGCTAAATGTGCTGAAATTAGAAGCATTGTATAAggcccggtgcagtggctcatgcctgtaatcctagcactttggg-agacctcggaggtgcccgagcccaggagtttggggaccaccatgggcaacataatgaaaccctttctctacaaaaaatacaaaagttagctaggcCTTTCGGATGCGACAACTAATTGTGCCACAGAGACACAACCCTAGTG-----GCTTAGGACTCTGGGAAGATATAATCTCCCCCGTTTATCTAGTGATCGATAATGCATGAACGCTTTAAAAGC i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11235062 566 + 72422247 aaaagaaaac-aagttggatttgatggtgcacacct---------gtagttccagctattctggaggatcactagtgccagggtggcagg----ggcggtgagtttgcagtgagctgagatcat-gacactgcacaacatcttgggtgacggagtgacacctagtctcaaaacaaaaa--GTAGCAGAAGGGAGAAAATTTGATGTGTCAGCAAGTAAATCAAGAAAGGGACATTATTAGAGTTGAGAAATAAATTGGAATGTGATTTGGTACCTTTCCCACAGAAGATAAGTTTGCTGAATGTGCTGAAATTAGAAGCATTATATAAGgccgggtgcagtggctcatgcctgtaatcctagcactttggg-aaaccttggaggtgcctgagcccaggagtttggggaccagcacgggcaac--aatgaaaccctttctctacaaaaaatacaaaagttagctaggcCTTTCGGATGCGACAACTGATTGTGCCACAGAGACACAATCCTAGTG-----GTTTAGGACTATGGGAAGATATAATCTCCCCCGTTTATCTACTCATCGATAATGCATGAACGCTTTAAAAGC i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56426559 568 - 109391073 aaaaaaaaccacagttggatttgatggtgcacacct---------atagttccagctattctggaggatcactagtgccggggtggcagg----ggcggtgagtttgcagtgagctgagatcac-gccactgcactccatcttgggtgacagagtgacacctagtctcaaaacaaaaa--GTAGGGGAGGGCAGAAAATTTGTTGTGTCAGCAAGTAAATGAAGAAAGGGACATTATTAGAGTTGAGAAATAAATTGGAATATGATTTGGTACCTTTTCCACAGAAGATAAGTTTGCTAAATGTGCTGAAATTAGAAGCATTATATAAggcccggtgcagtggctcatgcctgtaatcc-agcactttggg-agacctcggaggtgcctgagcccaggagtttggggaccagcatgggcaacgtaatgaaaccctttctctacaaaaaatacaaaagttagctaggcCTTTCGGATGCGACAACCGATTGTGCCACAGAGACACAACCCTAGTG-----GCTTAGGACTCTGGGAAGATATAATCCCCCCAGTTTATCTAGTGCTCGATAATGCATGAACGCTTTAAAAGC i nomLeu3.chr12 C 0 C 0 s macFas5.chr1 125105988 574 - 227556264 aaaaaaa----aagttggatttgatggtgcacacctgtagttccagtagttccagctattctggaggatcactagagccagggtgccaggggcaggcagtgagtttgcagtgagctaagatcac-accactgcactccatcctgggtaacagagtaacacatagtctcaaaacaaaaa--G-GGAGGGGGGGAGAAAATTTGTTGTGTCGGCAAGTAAATGAAGAAAAGGACATTATTAGAGTTGAGAAATAAATTAGAATATGATTTGGTACCTTTCCCACAGAAGATAAGTTTGCT-AATGTGCTGAAATTAGAAGCATTATATAAGTCACggtgcagtggctcatgcctgcaatcctagcactttggg-agacctcagaggtgcctgagcccaggaatttggggaccagcctgggcaacataatgaaaccccttctccacaaaaaatacaaaagttagctaggcCTTTCGGATGCGACAACTGATTATTCCACAGAGACACAACCTTAGTG-----GCTTAGGACTCTGGGAAGATATAATCTCCC--ATTTATCTAGTGATCAATAATGCATGAACACTTTAAAAGC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98615493 549 - 220367699 aaaagaa----aagttggatttggtggtgcacacct---------gtagttccagctattctggaggctcaCTAGAGCCAGGGTGGCAGG----TGCagtgagtttgcagtgagctgagatcacggccactgcactccatcctgggtgacagagtggcacctagtctcaaaacaaaaa--gtaggAGAGGGGAGAAAATTTGTTGTGTcagcaaagaaatgaagaaagggacATTATTAGAGTTGAGAAAGAAATTAGAATATGATTTGGTACCTTTCCCACAGAAGATAAATTTGCT-AACGTGCTGAAATTAGAAGCATTATATAAGGCCCgg----------------tgtaatcatagcactttgggaagacctCGGAtgtgcctgagcccaggag-ttggggaccagactgggcaacataacgaaaccctttctctccaaaaaatacaaaaattagctaggccctTCGGATGTGACAACTGATTGTGCCACAGAGACACAACCCTAGTG-----GCTTAGGACTCGGGAAAAGTATAATCTCCCTGGTTTATCTAGGGATCGATAATGCACCAACGCTTTAAAAGC i papAnu2.chr1 C 0 C 0 s chlSab2.chr20_KE148049v1_random 199195 570 + 1557941 aaaaaaa----aagttgaatttgatggtgcacatctgtagttccagtagttccagctattctggaggatcactagagccagggtggcaggggcaggcagtgagtttgcagtgagctaagatcac-accactgcactccatcctgggtaacagagtaacacatagtctcaaaacaaaaa--G-GGAGGGGGGGAG-AAATTTGTTGTGTCGGCAAGTAAATGAAGAAAAGGACATTATTAGAGTTGAGAAATAAATTGGAATATGATTTGGTACCTTTCCCACAGAAGATAAGTTTGCT-AATGTGCTGAAATTAGAAGCATTATATAAGTCACggtgcagtggctcatgcctgcaatcctagcactttggg-agacctcagaggtgcctgag-ccaggaatttggggaccagcctgggcaacataatgaaaccccttctctacaaaaaatacaaaagttagctaggcCTTTCGGATGCGACAACTGATTATTC--CAGAGACACAATTTTAGTG-----GCTTAGGATTCTGGGAAGATATAATCTCCC--ATTTATCTAGTGATCAATAATGCATGAACACTTTAAAAGC i chlSab2.chr20_KE148049v1_random C 0 C 0 s calJac3.chr21 50432391 539 - 50472720 aaaaaaa----aggttggatttgatggtacacacct---------gtagttccaactattctggagaat-------------------------tacggtgagtttgcagtgagctgagatcag-gccactgcactccatgctgggtgacagagtgacagctggtctcaaaacaaaaaaGGACGGGGGGGGGGGGAAATTTGTTGTGTCAGCAAGTAAATGAAGAAAGAGATATTATTAGAATTGAGAAATAAATTGGAATATAATCTGGTACCTTTCGCACAGAAGACAAATTTGCTAAACGTGCTGAAATTAGAAGCATTATATAAAgcccggtgaggtggctcccgcctgcaagcctagcactttggc-tgacctcggaggtgcttgagcccaggagtttggagatcagcctgggcaacatagtgaaaccccttctctacaaaaaatac--aagtaagccgggcCTTTTGGATGCACCAACTGATTGTGCCACAGAGATACAACCCTAATGGGGCAGCTTAGGACTCTGGGAAGATATAATCTTCCCCGTTAATCTAG----------TGCATGAACGCTTTAAAAGG i calJac3.chr21 I 23 C 0 e rheMac3.chr1 128200913 44 + 229590362 I a score=382434.000000 s hg38.chr1_KI270765v1_alt 50601 239 + 185285 TGGAACAGGCggccgggcgcggtggctcacacctgtaatcccagcacttcgggaggccgaggcggacggaccacgaggtcagctgatccagaccttcctggtcaacaaggtgaaacctctgtttctactaaaacacaaaacattagctgggcggggtggcgcgcgcctgtattcccagctactccagaggctgaggcaggggaatcccttgaacccgggaggccgaggttgcagtgagc s panTro4.chr1_AACZ03149435_random 159642 237 + 173505 TGGAACAGGCggccgggcgcggtggctcacacctgtaatcccagcactttgggaggccgaggcggacggaccacgaggtcagctgatccagaccttcctggccaacaaggtgaaac--ctgtttctactaaaacacaaaacattagctgggcggggtggcccgcgcctgtattcccagctactccagaggctgaggcaggggaatcgcttgaacccgggaggccgaggttgcagtgagc i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11235628 239 + 72422247 TGGAGCAGGCggccgggcgccgtggctcacacctgtaatcccagcactttgggaggccgaggcgggcggatcacgagatcagctgatcgagacaatcctggccaacaaggcgaaacctctgtctccactaaaatccaaaacattagccgggcggggtggggcgctcctgtattgtcagctactcgggaggctgaggcaggggaatcgcttgaacccgggaggtggaggttgcagtgagc i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56427127 239 - 109391073 TGGAACAGGCggccgggcgcggtggctcacacctgtaatcccagcactttgggaggccaaggcggagggaccaggaggccagctgatcgagaccatcctggccaacaaggtgaaccctctggttctactaaaacacaaaacattagccgggcggggtggcgcgcgcctgtattcccagctactccagaggctgaggcaggggaatcacttgaacccgggaggccgaggttgcagtgagc i nomLeu3.chr12 C 0 C 0 s macFas5.chr1 125106562 237 - 227556264 TAGAGCAGGCAgctgggcgtggtggctcacatctgtaatc-cagcactttgggaggccgaggcgggcggatcacaaggtcagctcatcgagaccatcctggccaacaaggtgaaacctccctctctactaaaatacaaaa-attagccgggtgtggtggtgtgcgcctgttgtcccagctactcaggagggtgaggcaggggaatagcttgaacctaggaggcggaggttgcagtgagc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98616042 239 - 220367699 TGGAGCAGgcggccgggctcggtggctcatgcctgtaatcttagcactttgggaggccaaggcgggcagatcacaaggtcagctgatcgagaccatcctggccaacaaagtgaaacctctgtccctactgaaatacaaaacattagccgggcagggtggagcgagcctgtattcccagctactcgggaggctgaggcaggggaatcgctcgaacccaggaggcggaggttgcagtgagc i papAnu2.chr1 C 0 C 0 s chlSab2.chr20_KE148049v1_random 199765 237 + 1557941 TAGAGCAGGCggctgtgcgtggtggctcacacctgtaatc-cagcactttgggaggccgaggcgggcagatcacaaggtcagctcatcgagaccatcctggccaacaaggtgaaacctccctctctactaaaatacagaa-attagccgggtgtggtggtgtgcgcctgttgtcccagctactcaagaggttgaggcaggggaatagcttgaacctaggaggcggaggttgcagtgagc i chlSab2.chr20_KE148049v1_random C 0 N 0 e calJac3.chr21 50432930 0 - 50472720 C e rheMac3.chr1 128200913 44 + 229590362 I a score=60282.000000 s hg38.chr1_KI270765v1_alt 50840 92 + 185285 caagatcgctccactgcactccagcct-ggcgaaagagcaagactg-tgtctcaGGGAAGAAGAaaaacaaaacaaaacaaaacaaaacaaaac- s panTro4.chr1_AACZ03149435_random 159879 82 + 173505 caagatcgctccactgcactccagcct-ggcgaaagagcaagactc-tgtctcaGGGAAGAAGA----------aaaacaaaacaaaacaaaac- i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11235867 67 + 72422247 cgagatcgcgccattgcactccagcct-ggcgacagagcaagactc-tgtctca-gaaagaaaa----------aaaaTA--------------- i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56427366 77 - 109391073 caagatccctccactgcactccagcct-ggcgaaagagcaagactc-tgtctcagggaagaaga----------aaaaaa-----aaaaaaaaa- i nomLeu3.chr12 C 0 C 0 s macFas5.chr1 125106799 84 - 227556264 tgagattgcaccacagcacttcagcctaggcgacagagtaagactc-catctcaaaaaataaaa----------taaaataaattaaaaaaaaaT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98616281 77 - 220367699 cgagatcgcgccactgcactcctgcct-ggcgacagagcaagactcgtgtctcagagaagaaaa----------aaaaa------aaaaaaaaa- i papAnu2.chr1 C 0 C 0 e calJac3.chr21 50432930 0 - 50472720 C e rheMac3.chr1 128200913 44 + 229590362 I a score=627.000000 s hg38.chr1_KI270765v1_alt 50932 1 + 185285 a s panTro4.chr1_AACZ03149435_random 159961 1 + 173505 a i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11235934 1 + 72422247 A i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56427443 1 - 109391073 T i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128200957 1 + 229590362 A i rheMac3.chr1 I 44 C 0 s macFas5.chr1 125106883 1 - 227556264 A i macFas5.chr1 C 0 N 0 s papAnu2.chr1 98616358 1 - 220367699 a i papAnu2.chr1 C 0 C 0 e calJac3.chr21 50432930 0 - 50472720 C a score=3414.000000 s hg38.chr1_KI270765v1_alt 50933 2 + 185285 CC s panTro4.chr1_AACZ03149435_random 159962 2 + 173505 CC i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11235935 2 + 72422247 TC i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56427444 2 - 109391073 CC i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128200958 2 + 229590362 CC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 124786777 2 - 227556264 CC i macFas5.chr1 N 0 C 0 s papAnu2.chr1 98616359 2 - 220367699 cc i papAnu2.chr1 C 0 C 0 e calJac3.chr21 50432930 0 - 50472720 C a score=1123369.000000 s hg38.chr1_KI270765v1_alt 50935 526 + 185285 TGGAGCAggcgtccctcagtgggctctaaccaccaaactttagatt-aacagccaaacgcgctaaccgattgtgccacag-agacACGTAG-TGTACCTTCTTCTGGGCGCTATAGGAAGGGTGCACTCACCAA--------------------ACACTCCCCAACCCTCCCATCCTCAGAGCCCACCCGGCAGTACAACTGTGAAAGGCCTTGGAAAACTGGAGCGATGAGAGGGGTGAATCGTGTTGGTCTCATTGGAGACCCGCAGGTTGGGAGATTCTGGAACCAGGACGACCTTGCCCCTCACCTGCAGCAGAAGCCCCCGGAAACA-------------CCCGG---------CCCCGACCCGGACCTGAGCCGCCTGGGGGCCCAAGGGAAGCTGAACGCCCGGTGGGCTCCCGCGATG---------GTTCTTTGTGCCGCCTTGACCCAGTGAGGCAGCCTGTGCCCACCCTGCCCAGTCACTTTTGAGGCCGCTGCGGAACTTCCGCTGCCATCTTCGGATCCTGTGTCCCGCACGGGGGCTCCACCAGGGCAGGGATGGTGGTGAGGGT s panTro4.chr1_AACZ03149435_random 159964 526 + 173505 TGGAGCAggcgtccctcagtgggctctaaccaccaacctttagatt-aacagccgaacgcgctaaccgattgtgccacag-agacACGTAG-TGTACCTTCTTCTGGGCGCTATAGGAAGGGTGCACTCACCAA--------------------ACACTCCCCAACCCTCCCATCCTCAGAGCCCACCCGGCAGTACAACTGTGAAAGGCCTTGGAAAACTGGAGCGATGAGAGCGGTGAATCGTGTTGGTCTCATTGGAGACCCGCAGGTTGGGAGATTCTGGAACCAGGACGACCTTGCCCCTCACCTGCATCAGAAGCCCCCGGAAACG-------------CCCGG---------CCCCGACCCGGACCTGAGCCGCCTGGGGGCCCAAGGGAAGCTGAACGCCCGGTGGGCTCCCGCGATG---------GTTCTTTGTGCCGCCTTGACCCAGTGAGGCAGCCTGTGCCCACCCTGCCCAGTCACTTTTGAGGCCGCTGCGGAACTTCCGCTGCCATCTTCGGATCCTGTGTCCCGCACGGGGGCTCCACCAGGGCAGGGATGGTGGTGAGGGT i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11235937 537 + 72422247 TGGAGCAggcgtccttcagtgggctctaactaccaacctttagatt-aacagccgaacgcgctaaccgattgtgccacagaAGACACGCAG-TGTACCTTCTTCTGGGCGCTATAGGAAGGGTGCACTCACCAA--------------------ACACTCCCCAACCCTCCCATCCTTAGAGCCCACCGGACAGTACAACTGTGCAAAGCTTTGGAAAACTGGAGAGATTAGAGCGGTGAATCGTGTTGGTCTCATTGGAGACCCGCAGGTTGGGAGATTCTGGAACCAGGACGACCTTGCCCCTCACCTGCATCAGAAGCCCCCGGAAACGC------------CCCGG---------CCCCGACCCGGACCTGAACCGCCTGGAGGCCCAAGGGAACCGGAACGGCCAGTGGGCTCCCGGGATGGCTCTTCCCGTTCTTTGCGCCTCCCTCACCCAGTGAGGGAGCCTGTGCCCACTCTGCCCAGTCACTTTTGAGGCCACTGCGGAACTTCCGCTGCCATCTTCGGATCCTGTGTCCCGCACGGGGGCTCCACCAGGGCAGGGATCGTGGTGAGGAT i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56427446 527 - 109391073 TGGAGCAggcgtccctcagtgggctctaaccatcaacctttagatt-aacagccgaacgcgctaaccgattgtgccgcag-agacACGTAG-TGTACCTTCTTCTGGGCGCTGTAGGAAGGGTGCACTCACCAA--------------------ACACTTCCCAACCCTCCCATCCTCAGAGCCCACCAGACAGCACAACAGTGAAAGGCCTTGGAAAACGGGAGCGATGAGAGCGGTGAATCGTGTTGGTCTCATTGGAGACCCGCAGGTTGAGAGATTCTGGAACCAGGACGATCTTGCCCCTCAACTGCATCAGAAGCCGCCGGAAACGC------------CCAGG---------CCCCGACCCGGACCTGAGCCGCCTGGGGGCCCAAGGGAAGCTGAACGCCCGGTGGGCTCCCGGGATG---------GTTCTTTGGGCCGCCTTGACCCAGTGAGGCAGCCTGTGCCCACCCTGCCCAGTCACTTTTGAGGCTGCTGCGGAACTTCCGCTGCCACCTTCGGATCctgtgtcccgcacgggggctccaccagggcagggatcatggtgagggt i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128200960 565 + 229590362 TGAAGCAggcgtccctcagtgggctctaaccaccaacctttagatt-aacagcagaacgcactaaccgattgtgccacag-agacACGTAGTTTTACGTCCTTCAGGGCGCTATAGGAAGGGTGCACTCACCAAACACTCCCCAACCCTCCCATACACTCCCCAACCCTCCCATCCTCAGAGCCCACCAGAC-GTACAACTGTGCAAGGCCTTGGAAAACTGGAGAGATTAGAGCGGTGAATCGTGTTGGTCTCGTCGGAGACCCGCAGGTTGGGAAATTCTGGAACCAGGACGACCTTGCCCCTCGCCTGCTTCAGAAGCCCCTGGAAAAGC------------CCCGGACCTGAGCTCCGCGACCCGGACCTGAGCCGCCTGGGGGCCCAAGAGACGCTGAACGCCCTGTGGGCTCTCGGGATGGCTCTTCCCATTCTTTGTGCCGCCTTCACCTAGTCAGCAAGCCTGTGCCCACCCTGCCCAGTCACTTTGGAGGCCGCTGCGGAACTTCCGCTGCTATCTTCGGATCCTGTGTCCCGCACGGGGGCTCCACCGGGGCAGGGATGGTGGTGAGGGT i rheMac3.chr1 C 0 M 513 s macFas5.chr1 124786779 577 - 227556264 TGAAGCAggcgtccctcagtgggctctaaccaccaacctttagatt-aacagcagaacgcgctaaccgattgtgccacag-agacACGTAGTTTTACCTCCTTCAGGGCGCTATAGGAAGGGTGCACTCACCAAATACTCCCCAACCCTCCCATACACTCCCCAACCCTCCCATCCTCAGAGCCCACCAGAC-GTACAACTGTGCAAGGCCTTGGAAAACTGGAGAGATTAGAGCGGTGAATCGTGTTGGTCTCGTCGGAGACCCGCAGGTTGGGAAATTCTGGAACCAGGACGACCTTGCCCCTCGCCTGCTTCAGAAGCCCCTGGAAAAGccctggcccgcgacccggacctgagctccgcgacccggaccTGAGCCGCCTGGGGGCCCAAGAGACGCTGAACGCCCTGTGGGCTCTCGGGATGGCTCTTCCCATTCTTTGTGCCGCCTTCACCTAGTCAGCAAGCCTGTGCCCACCCTGCCCAGTCACTTTGGAGGCCGCTGCGGAACTTCCGCTGCTATCTTCGGATCTTGTGTCCCGCGCGGGGGCTCCACCGGGGCAGGGATGGTGGTGAGCGT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98616361 529 - 220367699 tgaagcaGGCGTCCCTCAGTGGGCTCTAACCACCAACCTTTGGATTAAACAGCCGAACGCGCTAACCCATTGCGCCACAG-AGACACGTAG-TTTACCTCCTTCTGGGCGCTATAGGAAGGGTGCACTCACCAA--------------------ACACTCCCCAACCCTCCCATCCTCAGAGCCCACCACACAGTACAACTGTGCAAGGAATTGGAAAACTGGAGAGATTAGAGCGGTGAATCGTGCTGGTCTCGTCGGAGACCCGCAGGTTGGGAGATTCTGGAACCAGGACGACCTTGCCCCTCGCCTGCTTCAGAAGCCCCTGGAAAAGC------------CCCGG--------CCCGCGACCCGGACCTGAGCCGCCTGGGGGCCCAAGAGACGCTGAACGCCCCGTGGACTCCCAGGATGG---------TTCTTTGTGCCGCCTTCACCCAGTGAGGGAGGCTGTGTCCACCCTGCCCAGTCGCCTTTAAGGCCGCTGCAGAACTTCAGCTGCCATCTTCGTATCCTGTGTCCTGCACGGGGGCTCCACCGGGGCAGGGATGGTGGTGAGCGT i papAnu2.chr1 C 0 C 0 s calJac3.chr21 50432930 511 - 50472720 TGGAGCAggggttcctgggtgggatctaaccaccaac--------------------cgcgctaaccgattgtgcc-cag-agTGACGGAG-TAGAC---CTTCTGGGCGCTAGAGGAAGGGTGCACTCACCAA--------------------ACACTCCCCGTCTCTCCCATCCTCAGAGTCCACCAGACAGGACGACTGTGCAAGGCCTTGGAAATCCAGAGAGATTAGAGCGGTGGGTCGTGTTGATCTCGTTGGACACTCGCAGGTTAGGAGATTCTGGAACCAGGACGGCCCTGCCCCACTCCTGCTTCAGAATCCCCCGGAAATGC------------CCCAC---------CCTCGACCTCGACCTGAGCCTCCTGG-GGCCCAGGGGAGGCTGAACGCCCGGCGGACTCCCGGGATGGCTCTTCCCGTTCTTTGCGCCGCCTTCACCCAGTGAGGGAGCCTGTGCCCACCGTGCCCAGACGCTTTCGAGGCCGCTGCGGAGCTT-GGCTGCCATCTTCGGATCCCGTATCCCGCACGGGGGCTCCACCAGGGCAGGGATGGGGGTGAGGGT i calJac3.chr21 C 0 C 0 a score=501313.000000 s hg38.chr1_KI270765v1_alt 51461 313 + 185285 GGCTCGTGGGTCCCCTCGCGGAGAGCAGGGTCTGGCACTCACCAGCGCGCACGACTAGGACTTGTTGAATTAATCCATCGTCACCTTCAGCTTTTAGTCCTTTGAAGAGCCCCGAAAATGGAAATCATGAAATATTTTACCATGGGGAAGtt------------------------------------------------------ttgattt---------gtttttgagacagggtctcgctaggtcacccaggctggagtgcagtggtgcaaacacggctcactgcagcctcgacctcccgggGCCATCGTCGCCTTTAGCTTTTAGTCCCTTGAAGAATCCCAAGAATAGAAATCATGAGA--TTTTTCCATGG s panTro4.chr1_AACZ03149435_random 160490 331 + 173505 GGCTCGTGGGTCCCCTCGCGGAGAGCAGGGTCTGGCACTCACCAGCGCGCACGACTAGGACTTGTTGAATTAATCCATCGTCACCTTCAGCTTTTAGTCCTTTGAGGAGCCCCGAAAATGGAAATCATGAAATATTTTACCATGGGGAAgttt---ttt--------------gtttt-------ttgtttttg------------tttgttt---------gtttttgagacagggtctcgctaggtcgcccaggctggagtgcagtggtgcaaacacggctcaccgcagcctcgacctcccgggGCCATCGTCGCCTTTAGCTTTTAGTCCCTTGAAGAATCCCAAGAATAGAAATCATGAGA--TTTTTCCATGG i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11236474 353 + 72422247 CGCTCATGGGTCCCCTCAAGGGGAGCAGGGTCTGGCACTCACCAGGGCGCACGACTAGGACTTGTTGAATTAATCCATCGTCGTCTTTAGCTTTTAGTCCTTTGAAGAGCCCTGAAAATGGAAATCATGAAATATTTTACCATGGAGAACTTTTGATtt--------------gtttttttgttgttgtttttgttgtttgtttgtttgtttt---------gtttttgagacagggtctcgcttggtcgcctaggctggagtgcagtggtgcaaacacggctcattgctgccttgacctcccgggGCCATCGTCGCCTTTAGCTTTTAGTCCCTTGAAGAACCCCGAGAATAGAAATCATGAGA--TTTTTCCATGG i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56427973 334 - 109391073 cactcatgggtcccctcgcggggagcagggtctggcactcaccagcgcgcacgactaggacttgttgaattaatCCATCCTCACTTTTAGCTTTTAGTCCTTTGAAGAGCCCCGAAAATGGAAATCATGAAATATTTTACCATGGGGAAGTTTTGAttt--------------gtttt-------ttgtttttg------------tttgttt---------gtttttaagacagggtctcgctaggtcgcccaggctggagtgcagtggtgcaaacacggctcactgaagcctcgacctcccgggGCCATCGTCGCCTTTAGCTTTTAGTCCCTTGAAGAATCCCAAGAATAGAAATCATGAGA--TTTTCCCATGG i nomLeu3.chr12 C 0 I 3464 s macFas5.chr1 124787356 348 - 227556264 GGCTCGTGGGGCCCCTCGCGGGGAGCAGGGTCTGGCCCTCACCACGGCGCACGACTAGGAC---TTGAATGAATCCATCGTCACCTTTAGCTTTTAGTCCTTTGAAGAGCCCTGAAAATGGAAATCATGAAATATTTTACCATGGGGAAGttttgatttttttaaattttttaatttt-------ttattttat------------ttatttttattattttttttttgagacagcgtctcgcttggt--------ctggagtgcagtggtgcaaacacggttcattgcagcctcgacctcccgggGCCATCGTCGCCTTTACCTTTTAGTCCCTTGAAGAACCCCAAGAATAGAAATCATGAGATTTTTTTCCATAG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98616890 336 - 220367699 GGCTCGTGGGGCCCCTCGCGTGGAGCAGGGTCTGGCCCTCACCAGGGCGCACGACTAGGACTTGTTGAATGAATCTATCGTCGCCTTTAGCTTTTAGTCCTTTGAAGAGCCCTGAAAATGgaaatcatgaaatattttacGATGGGgaagttttgattt--------------gtttg-------ttgttttgt------------tttgttttg-------ttttttgagacagggtctcgcttggttgcccaggctggagtgcagtggtacaaacatggctcactgcagcctcgacctcccaaggccATCGTCGCCTTTAGCTTTTAGTCCCTTGAAGAACCCCAAGAATAGAAATCATGAGA--TTTTTCCATGG i papAnu2.chr1 C 0 C 0 s calJac3.chr21 50433441 316 - 50472720 CGCTCGTGGGTCCCCTCACGGGGAGCAGGGTCCTGCACTCAGCAGGGCACACGACTAGGACTTGTCGAATGAATCCATCGTCGCCTTCGGCTTTTAGTGCTTTGAAGAGCCCTGAAAATGGAAATCATGAAATATTTTTCCATGGGGGAgtt---------------------------------ttgt-----------------tttgttt---------tgttttgagacggggtctcactt-gtcgcccaggctggagtgcagtggtgcaaacacggcccactgcagccaccacttcctgggGCCGTCGTAGCCTTTAGCTTTTAGTTTTTTGAAGAACCCTGAGAATAGAAATCAAGAGA--TTTTTCCAAGG i calJac3.chr21 C 0 C 0 e rheMac3.chr1 128201525 513 + 229590362 M a score=224484.000000 s hg38.chr1_KI270765v1_alt 51774 155 + 185285 GGAAGTTCTTTTTTCAAAGCGTTTATTCACGTTGATTTCTAGGCATCCCCCGGGGAGGGCAACGGGCAGGGCCTCCAGTGCACCTTCTGC-GCGGTGGAGCCGCGGGGGCTCAGCTGAGCAGTGGTAGGGTCCTGGGGCGGGAGGGCAGGA----GGGAA s panTro4.chr1_AACZ03149435_random 160821 155 + 173505 GGAAGTTCTTTTTTCAAAGCGTTTATTCACGTTGATTTCTAGGCATCCCCCGGGGAGGGCAACGGGCAGGGCCTCCAGTGCACCTTCTGC-GCGGTGGAGCCGCGGGGGCTCAGCTGCGCAGTGGTAGGGTCCTGGGGCGGGAGGGCAGGA----GGGAA i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11236827 159 + 72422247 GGAAGTTCTTTTTTCAAAGCGTTTATTCACGTTGATTTCTAGGCATCCCCCGGGGAGGGAAACGGGCAGGGCCTCCAGTGCACCTTCTGC-GCGGTGGAATCGCGGGGGCTCAACTGAGCAGTGGTAGGGTCCTGGGGCGGGAAGGCAGGAGCGGGGGAA i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56431771 155 - 109391073 GGAAGTTCTTTTTTCAAAGCGTTTATTCACGTTGATTTCTAGGCCTCCCCTGGGGAGGGCAACGGGCAGGACCTCCAGTGCACCTTCTGC-GCGGTGGAGCCGCGGGGGCTCAGCTGGGCAGTGGTAGGGTCGTGGGGCGGGAGGGCAGGA----GGGAA i nomLeu3.chr12 I 3464 C 0 s macFas5.chr1 124787704 153 - 227556264 GGAAGTTCTTTTTTCAAAGCTTTTATTCACGTTGATTTCTAGGCATCCCCCGGGGAGGGCAACGGGCAGGGCCTCCAGTGCACCTTCT---GCGGTGAAGCCGCAGGGACTCAGATGGGCGGTGGCCGGGCTGTGGGGCAGGAGGGTAGGA----GCGGG i macFas5.chr1 C 0 I 4 s papAnu2.chr1 98617226 144 - 220367699 GGAAGTTCTTTTTACAAAGCGTTTATTCACATTGATTTCTCGGCATCCCCCGGAGAGGGCAATGGGCAGGGCCTCCAGTGCACCTTCTGCGGCGGTGGAGCCGCAGGGGCTCAGCTGGGCAGTGGTACGGTC------------GGTAGGA----GCGGG i papAnu2.chr1 C 0 I 4 s calJac3.chr21 50433757 142 - 50472720 GGAAGTTCTTTTTACAAAGCGTTTATTCAGGTTGATTTCTCAGC-CCCCCCGCGGGTGTCAACTGGCAGGGTTTCCAGTGCACCTTCTGC-GCGGTGTGGCCGCGGGGACTGAGCTGGGCGGTTGGAGGGC------------GGGTACCC----GGGAA i calJac3.chr21 C 0 C 0 e rheMac3.chr1 128201525 513 + 229590362 M a score=2061334.000000 s hg38.chr1_KI270765v1_alt 51929 973 + 185285 GGGAAAAGCAAAAGCGGGGAAAGAAGCCGGGGAGCGGTGGAACACACATCCAGACCTCCTGAAAGGCTCGTGCAGAGGCACAGGCTGGATCTTCTGGAGGTGAGAAttgtttt-------------------ttgttgttgttgttgttgttgAAGCAGAATGGGGAGGAACTGAGGGGAAAATTCAGAGAGAACATGAAAGAGCTCCAAACGCGAGGACCTATAACTCCCCAAGAATAACATCTTCCAGAAGAACTAGACAGAAAACTGGGTGTCTGGGAACCCTGAAATCCCTGGAGGAGTAGCATCATCATGACCCTCTGTGTTCCTTTTGGCGAAAGGACTTGCTTCCCTTGTTTGTACAATTGTTTGTGTTTGTTAAATAAATAAAACCCTTTTCATATATCTTTGAAAGTACAttggctctattattttatgattacaaacaatgctgcagtcatcattcttgtacacttctcattggccactagtgtatttctatagggtagaggcctggagagcagttgctCCAGCACAGTGATTACATGGTttttatatcattccatgttcttcttccctttgttgg----cttattagctataactctttctttCTTCTTGTCCACCGCATCTCCGACTTCTTT-TCTGCttttgctttttcagtgatggctttagggtttccagaatacatctttatcag--tgccatctagtgacattctacctccccttctggccattatgctggtgttgtcatgtaatttggttttagacatgttataaaccccacaatccattattattgcttttgtttaatcggtcaaattattttaaaagatttaaataagaagaacat-atatatttaactgtgtacataccgatttccagtagtctccatttctttgtgtagatccagttttctgtctggtatccttatccttaggcctggaggactccctttgcatttcttgtcgtgtgggttgctgaattctttctttc s panTro4.chr1_AACZ03149435_random 160976 980 + 173505 GGGAAATGCAAAAGCAGAGAAAGAAGCCGGGGAGCGGTGGAACACACATCCAGACCTCCTGAAAGGCTCGTGCAGAGGCACAGGCTGGATCTTCTGGAGGTGAGAATTGTTCT-------------ttgttgttgttgttgttgttgttgttgAAGCAGAATGGGGAGGAACTGAGGGGAAAATTCAGAGAGAACCTGAAAGAGCTCCAAACGCGAGGACCTATAACTCCCCAAGAATAACATCTTCCAGAAGAACTAGACAGAAAACTGGGTGTCTGGGAACCCTGAAATCCCTGGAGGAGTAGCATCATCATGACCCTCTGTGTTCCTTTTGGCGAAAGGACTTGCTTCCCTTGTTTGTACAATTGTTTGTGTTTGTTAAATAAATAAAACCCTTTTCATATATTTTTGAAAGTACAttggctctattattttatgattacaaacaatgctgcagtcatcattcttgtacacttctcattggccactagtgtatttctatagggtagaggcctggagagcagttgctCCAGCACAGTGATTACGTGGTttttatatcattccatgttcttcttccctttgttgg----cttattagctataactctttctttCTTCTTGTCCACCGCATCCCCGACTTCTTTCCCTGCttttgctttttcagtgatggctttagggtttccagaatacatctttatcag--tgccatctagtgacattctacctccccttctggccattatgctggtgttgtcatgtaatttggttttagacatgttataaaccccacaatccattattattgcttttgtttaatcggtcaaattattttaaaagatttaaataagaagaacat-atatatttaactgtgtacataccgatttccagtagtctccatttctttgtgtagatccagttttctgtctggtatccttatccttaggcctggaggactccctttgcatttcttgtagtgtgggttgctgaattctttctttc i panTro4.chr1_AACZ03149435_random C 0 I 9 s ponAbe2.chrUn 11236986 970 + 72422247 GGGAAAAGCAAAAGCAGGGAAAGAAGCCGCGGAGCGGTGGAACAGACATCTAGACCTCCTAAAAGTCTCGTGCAGAGGCACAGGCTGGATCTTCTTTAGGTGAGAATTGTttg-------------------ttgttgttgttgttgttgttgAAGCAGAATGGGGAGCAACTGAGGGGAAAATTCAGAGAGAACATGGAAGAGCTCCAAACGCCAGGACCTATAACTTCCCAAGAATAATATCTTCCAGAAGAACTAGACAGAAAACTAGGCGTCTGGGAACCCTGAAATCCCTGGAGGAGTAGCATCATCATGACCCTCTGTGTTCCTTTCGGCAAAAGGACTTGCTTCGCTTGTTTGTACAATTGTTTGTGTTTGTTAAATAAATAAAACCCTTTTCATATATCTTTGAAAGTACATTGGCTCTATTATTGTAAGattacaaataatgctgcaatcttcattcttgtacacttctcattggccactggtgtgtttctatagggtagaggcctggagagcagttgctccagcatagtgtttacatattttttatatcattcca---ttttctttccttttttgg----cttattagctgtaactatttctttcttcttgtccactgc-tccctgacttcttttcctgcttttgctttttcagtgatggctttagggttttcagaatacatctttatcag--tgccatctaacgacattctacctccccttctggctgttatgctagtgttgtcatgtaatttgattttagccatgttataaaccccagaatccattattattgcttttgtttaattggtcaaattattttaaaagatttatataataagaacat-atatatttaactatgtacataccaatttccagtagtctccatttctttgtgtagatccagatttctgtctggtatctttattcttaggcctggaggactccttttgcatttcttgtagtgtgggttgctgaattctttttttt i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56431926 973 - 109391073 CGGAAAAGCAAAAGCAGGGAAAGAAGCCGGGGAGCGGTGGAACAGACATCCAGACCTCCTGAAAGGCTCGTGCAGAGGCACAGGCTAGATCTTCTGGAGGTGAGAAttgtttt----------------ttgtcgttgttgttgttgttgttgAAGCAGAATGGGGAGGAACTGAGGGGAAAATTCAGAGAGAACATGAAAGAGCTCCAAACGTGAGGACCTATAATTCCCCAAGAATAACATCTTTCAGAAGAACTAGACAGAAAACTAGGCATCTGGGAACCCTGAAATCCCTGGAGGAATAGCATCATCATGACCTTCTGTGTTCCTTTTGTCAAAAGGACTTGGTTCCGTTGTTTGTACAATTGTTTGTGTTTGTTAAATAAATAAAACCCTTTTCATATATCTTTGAAAGTACATGGGCTCTATTAttttatgattacaaacaatgctgcagtcatcattcttgtacacttctcattggccactggtgtatttctacagtgtagaggcctggagagcagttgctccagcatagtgtttacatGGTttttatatcattcca---tgttcttccctttgttag----cttattagctgtaactctttctttcgtCTGGTCCACCGG-TCCCTGACTTCTTTCCCTGCTTTTGCTTTTTGAGTGACGGCATTAGGGTCTCCGGAATACATCTTTATCAG--TGCCATCTAGTGACATTCTACctccccttctggtcattatgctagtgttgtcatgtaatttgattttagacatgttataaaccccacaatccactattattgcttttgtttaatcggtcaaattattttaaaagatttaaataataagaacat-atatatttaacggtgtacataccgatttccagtagtctccgtttctttgcgtagatccagatttctgtctggtatccttatccttaggcctggaggactccttttgcatttcttgtagtgtgggttgctgaattctttcattt i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128202049 957 + 229590362 GGGAAAAGCAAAAGCAGGGAAAGAAGCT-GAGAGCGGTGGAACAGACATCCAGACCTCCTGAAAGGCTCGTGCA---GCACAGGATGGATCTTCTGGAGGTGAGAATTGTTTT-------------------------TTGTTGCTGTTGTTGAAGCAGAATGGGGAGGAACTGAGGGGAAAATTCAGAGAGAACATGAAAGAGCTCCAAACGCGAGGACCTATAACTCCCCAAGAATAACATCTTCCAGAAGAACTAGACAGAAAACTAGGCTTCTGAGAACCCTGAAATCCCTGGAGGAGTAGCATCATCATGACCCTCTGTGTTCCTCTTGGCAAAAGGACTTGCTTCCTTTGTTTGTACAATTGTTTGTGTTTGTTAAATAAATAAAACCCTTTTCATGTATCTTTGAAAGGACAttggctctattattttatgattacaaataatgctgcagtcgtcattcttgtacacttatcattggccactggtgtatttctatagggtagaggcctggagagcagttgctCCAGCATAGTGATTACATGGTttttatatcattcta---ttttctttcctttgttgg----tttattagctgtaattctttctgtcttctggtccaccgc-tct-cgacttc-ttcgctgcttttgc-ttttcagtgatggctttagggtttccagaatacatctttatcag--tgccatcaagtgacattctacctccccttctggccattatgctagtgttgtcatgtaatttgattttacacatgttataaaccccagaatccattattattgcttttgtttagtcagtcaaattattttaaaacatttaaataataataacat-atatatttaactatgtacataccaatttccagtagtctccatttctttgtgtagatccatttttctgtctggtatccttatccttaggcctggaggactccttttgcatttattgcagtgtgggttgctgaattatttctttc i rheMac3.chr1 M 513 I 330 s macFas5.chr1 124787861 984 - 227556264 GGGAAAAGCAAAAGCAGGGAAAGAAGCCGGGGAGCCGTGGAACAGACCTCCAGACCTCCTGAAAGGCTCGTGCAGAGGCACAGGCTGGATCTTCTGGAGGTGAGAAttgttttgttgttgttgttgttgttgttgttgttgttgttgttgttgAAGCAGAATGGGAAGGAACT--GGGGAAAATTCAGAGAGAACATGAAAGAGCTCCAAACGCGAGGACCTATAACTCCCCAAGAATAACATCTTCCAGAAGAACTAGACAGAAAACTAGGCTTCTGAGAACCCTGAAATCCCTGGAGGAGTAGCATCATCATGACCCTCTGTGTTCCTCTTGGCAAAAGGACTTGCTTCCCTTGTTTGTACAATTGTGTGTGTTTGTTAAATAAATAAAACCCTTTTCCTATATCTTTGAAAGGACATTGGCTCTGTTAttttatgattacaaataatgctgcagtcgtcattcttgtacacttatcattggccactggtgtattt-tatagggtagaggcctggagagcagttgttCCAGCATAGTGATTACATGGTttttatatcattcta---ttttctttcctttgttgg----tttattagctgtaattctttctgtcttctGGTCCACCGC-TCT-CGACTTCTTTCGCTGCttttgc-ttttcagtgatggctttagggtttccagaatacatcttcatcgg--tgccatcaagtgacattctacctccccttctggccattatgctagtgttgtcatgtaatttgattttacacatgttataaaccccagaatccattattattgcttttgtttaatcagtcaaattattttaaaacatttaaataataataacat-atatatttaactatgtacatactaatttccagtagtctccatttctttgtgtagatccagatttctgtctggtatccttatccttaggcctggaggactccttttgcatttattgcagtgtgggttgctgaattatttctttc i macFas5.chr1 I 4 I 2 s papAnu2.chr1 98617374 943 - 220367699 GGGAAAAGCAAAAGCAGGGAAAGAAGCCGGGGAGCGGTGGAACAGACATCCAGACCTCCTGATAGGCTCGTGCA---GCACAGGCTGGATCTTCTGGAGGTGAGAattgtttt-------------------------ttattgctgttgttgaaGCAGAATGGGGAGGAACTGAGGGGAAAATTGAGAGAGAACATGAAAGAGCTCCAAACGCGAGGA---------CCCCAAGAATAACATCTTCCAGAAGAACTAGACAGAAAAGTACGAGTCTGGGAACCCTGAAATCCCTGGAGGAGTAGCATCATCATGACCCTCTGTGTTCCTTTTGGC-AAAGGACTTGCTTCCTTTGTTTGTACAATTGtttgtgtttgttaaataaataaaaccctttTCATATATCTTTGAAAGTACCTTGGctctattattttatgattacaaataatgctgcagtcGTCATTCTTGTACACTTCTCATTGGCCACTGGTGTATTTCTATAGGGTAGAGGCCTGGAGAGCAGTTGCTCCAGCATAGTGATTACATGGTTTTTAtatcattcca---ttttctttcctttgttgg----cTTATTAGCTATAA--CTCTCTTTCTTCTGGTCCACCAC-TCTCCGACTTCTTTCCCTGCTTTTGC-TTTTCAGTGATGGCTTTAGGGTTTCCAGAATACATCTTCATCGG--TGCCATCTAGTGACATTCTACCTCCCCTTCTGGCCATTATGCTAGTGTTGTCATGTAATTTGATTTTACACATGTTATAAACCCCAGAATccattattattgcttttgtttaattggtcaaattattttaaaacatttaaatagtaagaacat-atatatttaactatGTGCATACCGATTTCCAGTAGTCtccatttctttgtgtagatccaGA-TTCTGTCTGGTATCCTTATCCTTAGGCCGGGAGGACtccttttgcatttcttgtaGCGTGGGTTGctgaattctttc---- i papAnu2.chr1 I 4 I 1 s calJac3.chr21 50433899 931 - 50472720 GAATAAAGCAAAAGTAGAGGAAGAAGCCGGGCGGCGGTGGACCAGACATCCAGACCTCCTGAA------------------AGGCTGGATCTTCTGGAAATGAGAACTGTTAT---------------------------------TTTATTGCAGAAGAATGGGGAGGAATTGAGGGGAAAA-GGAAATACAAGCTGAAAGAGTCCCCAAGGCAAGGATCTATAGCTCCCCAAGGATAAGATCTTCCAGAAGAACTAGACCCAAACCTAGGCGTCTGAGAACCATGAAATCCTTGGAGGAGCAGCCTCATCATGACCCTCGGCGTTCCTTTTGGTAAAAGAACCTTTTTTCCTTGTTTGTTCAATTCTCTGTGTTTGT----TAAATAAAACTCTATCCATGTATCTTTGGAATTACATTGGTTCTGTAATTTTATGATCACAAGTAATGCCTCAGTCATCATTCTTGTAGAGTTATCATTGGCCACTGGTGTATTCCTACAGGGTAGAGGCCTGGAGAGCGGTT-TTCCAGCATGCTGATGACATAGTTTTTATAGCAGTCCA----TTGGTTTCCTTTGTTGGCTTACTTATTAGCTATAA---TTCCTTTCACCTGGCCCACCTC-TCCCCAGCTtctttgcctgcttttgctttttcggtgatggctttagggtttctaggatatatctttatcggtttgccatcaagtgacattatacctctttttctggccattatgctagtgttgtcatgtaatttgattttagacatgttataaaccacagaacccattactattgcttttgtttaatcagtcaaattattttaaaagattcaaataataagaaaataatgtatttgactacgtacatagcaattttcagtcatctccatttctttgtgtaggtccagctttctgtctggtatcctaacccttaggcctggaggactcggtttgcatttcttgtggtgtgagttgctgaattctttc---- i calJac3.chr21 C 0 C 0 a score=-3083.000000 s hg38.chr1_KI270765v1_alt 52902 6 + 185285 -tttttt s panTro4.chr1_AACZ03149435_random 161965 6 + 173505 -tttttt i panTro4.chr1_AACZ03149435_random I 9 C 0 s ponAbe2.chrUn 11237956 6 + 72422247 -tttttt i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56432899 4 - 109391073 -tttg-- i nomLeu3.chr12 C 0 C 0 s macFas5.chr1 124788847 4 - 227556264 -tttt-- i macFas5.chr1 I 2 I 1 s papAnu2.chr1 98618318 1 - 220367699 -t----- i papAnu2.chr1 I 1 C 0 s calJac3.chr21 50434830 4 - 50472720 attt--- i calJac3.chr21 C 0 C 0 e rheMac3.chr1 128203006 330 + 229590362 I a score=-3400.000000 s hg38.chr1_KI270765v1_alt 52908 2 + 185285 -tt s panTro4.chr1_AACZ03149435_random 161971 2 + 173505 -tt i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11237962 2 + 72422247 -tc i ponAbe2.chrUn C 0 C 0 s rheMac3.chr1 128203336 1 + 229590362 -t- i rheMac3.chr1 I 330 I 1 s macFas5.chr1 124788852 1 - 227556264 -t- i macFas5.chr1 I 1 I 331 s papAnu2.chr1 98618319 1 - 220367699 -t- i papAnu2.chr1 C 0 I 1 s calJac3.chr21 50434834 2 - 50472720 tt- i calJac3.chr21 C 0 C 0 e nomLeu3.chr12 56432903 0 - 109391073 C a score=4338.000000 s hg38.chr1_KI270765v1_alt 52910 4 + 185285 tttt- s panTro4.chr1_AACZ03149435_random 161973 4 + 173505 tttt- i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11237964 4 + 72422247 tttt- i ponAbe2.chrUn C 0 I 318 s rheMac3.chr1 128203338 4 + 229590362 tttt- i rheMac3.chr1 I 1 C 0 s macFas5.chr1 124789184 4 - 227556264 tttt- i macFas5.chr1 I 331 C 0 s papAnu2.chr1 98618321 4 - 220367699 tttt- i papAnu2.chr1 I 1 C 0 s calJac3.chr21 50434836 4 - 50472720 -tttg i calJac3.chr21 C 0 C 0 e nomLeu3.chr12 56432903 0 - 109391073 C a score=781.000000 s hg38.chr1_KI270765v1_alt 52914 1 + 185285 g s panTro4.chr1_AACZ03149435_random 161977 1 + 173505 g i panTro4.chr1_AACZ03149435_random C 0 C 0 s nomLeu3.chr12 56432903 1 - 109391073 g i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128203342 1 + 229590362 g i rheMac3.chr1 C 0 C 0 s macFas5.chr1 124789188 1 - 227556264 a i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98618325 1 - 220367699 a i papAnu2.chr1 C 0 C 0 s calJac3.chr21 50434840 1 - 50472720 g i calJac3.chr21 C 0 C 0 e ponAbe2.chrUn 11237968 318 + 72422247 I a score=463735.000000 s hg38.chr1_KI270765v1_alt 52915 204 + 185285 tatgtctttaaatgtccttatttcaatcacattcttgaaagatttttcattttggcatagaattctaggaaaac-------tttatttctttcagtactttaggatgttgccact-------------------------------ttgtttttgtaaaactggcatAAAGCGGGCTTCTTGTACTTGTTATATAATTTTTGGAATGTGTATTTAAATTAAAAACATTAAAATGggctggac s panTro4.chr1_AACZ03149435_random 161978 204 + 173505 tatgtctttaaatgtccttatttcaatcacattcttgaaagatttttcattttggcatagaattctaggaaaac-------tttatttctttcagtactttaggatgttgccact-------------------------------ttgtttttgtaaaactggcatAAAGCGGGCTTCTTGTACTTGTTATATAATTTTTGGAATGTGTATTTAAATTAAAAACATTAAGATGggctggac i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11238286 204 + 72422247 tatgtctttaaacatcctcatttcagtcacattcttgaaagatttttcattttggcatagaattctaggaaaac-------tttatttgtttcaatgctttaggatgttgccact-------------------------------ttgcttttgTAAAACTGGCATAAAGTGGGCTTCCTGTACTTGTTATATAATTTTTGAAATGTGTATTTAAATTAATAACATTAAAATGGGCTGGAC i ponAbe2.chrUn I 318 I 306 s nomLeu3.chr12 56432904 204 - 109391073 tatgtctttaaatgtccttatttcagtcacattcttgaaagatttttcattttggcatagaattctaggaaaac-------tttatttctttcagtactttaggatgttgccact-------------------------------ttgtttttgTAAAACTGGCATAAAGTGGGCTTCTTGTACTTGTTATATAATTTTTGGAATGTGTATTAAAATTAAAAACATTAAAATGggctggac i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128203343 203 + 229590362 tatgtctttaaatgtccttatttcagtcacattcttgaaaga--gttcattttgtcatagaattctaggaaaact------tttagttttttcagtactttaggatgttgccact-------------------------------ttgttttTGTAAAACTGGCATAAAGTGGGCTTCCTGTACTTGTTATATAATTTTTGGAATGTGTATTTAAATTAAAAACATTAAAATGGGCTGGAC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 124789189 203 - 227556264 tatgtctttatatgtccttatttcagtcacattcttgaaaga--gttcattttgtcatagaattctaggaaaact------tttagttttttcagtactttaggatgttgccact-------------------------------ttgtttttgTAAAACTGGCATAAAGTGGGCTTCCTGTACTTGTTATATAATTTTTGGAATGTGTACTTAAATTaaaaacattaaaatgggctggac i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98618326 204 - 220367699 tatgtcTTTAAATGTCCTTATTTCTGTCACATTCTtgaaagatttttcattttgGCATAGAATTCTaggaaaac-------tttatttctttcagtactttaggATGTTGGCACT-------------------------------TTGTTTTTGTAAAACTGGCATAAAGTGGGCTTCCTGTACTTGTTATATAATTTTTGGAAtgtgtatttaaattaaaaacattaaaatgggcTGGAc i papAnu2.chr1 C 0 C 0 s calJac3.chr21 50434841 242 - 50472720 tatgcctttaaatgtccttatttcagtcacattcatgacaggtttttcattttggcatagaattctaggaaaatttctttctttctttctctcagtacttcaggatgttgccactctgatgacttgtcattgATACGTCATCCTTCCTGTTTTTGTAAAAATGGCATAAAGTGGGCTTCCTGTGCTCGTTATATAATATTTGAAATGTGTATTTAAATTAAAAACATTAAAATGggctggac i calJac3.chr21 C 0 C 0 a score=25420.000000 s hg38.chr1_KI270765v1_alt 53119 13 + 185285 aaggtggtgcacg s panTro4.chr1_AACZ03149435_random 162182 13 + 173505 aaggtggtgcacg i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11238796 13 + 72422247 gaggtggtgcatg i ponAbe2.chrUn I 306 C 0 s nomLeu3.chr12 56433108 13 - 109391073 aaggtgatgcaca i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128203546 13 + 229590362 AAGGTGGTGCACG i rheMac3.chr1 C 0 I 144 s macFas5.chr1 124789392 13 - 227556264 aaaatgatgcacg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98618530 13 - 220367699 aaggtggtgcacg i papAnu2.chr1 C 0 C 0 s calJac3.chr21 50435083 13 - 50472720 gaggtggctcatg i calJac3.chr21 C 0 C 0 a score=151682.000000 s hg38.chr1_KI270765v1_alt 53132 103 + 185285 cctgtagtcccagcac----------------------------tttgggaaggcgagacaggaggatcgcttgaggcccagagttggagaccagtgtgggcaaggcagcaagaccctgtctctCTGTCTC s panTro4.chr1_AACZ03149435_random 162195 103 + 173505 cctgtagtcccagcac----------------------------tttgggaaggcgagacaggaggatcgcttgaggcccagagttggagaccagtgtgggcaaggcagcaagaccctgtctctCTGTCTC i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11238809 101 + 72422247 cctgtagtcccagcac----------------------------tttgggagggagagacaggaggatcccttgaggctcagagttggagaccactgtgggcaagatagcaagaccctg--tTGCTGTCTC i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56433121 103 - 109391073 cctgtagtcccagcac----------------------------tttgggaaggggagacaggaggatcacttgaggcccagagttggagaccagtgtgggcaatacagcaagaccctgtctctCTGTCTC i nomLeu3.chr12 C 0 C 0 s macFas5.chr1 124789405 131 - 227556264 cctgtagtcctagcactttgggaggctTTGGAagtcccagcacttttgggagggggagacaggaggatggctttaggccctgagttggagactagtgtgggcaaggtagcaagaccctatctGTCTGTCTG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98618543 103 - 220367699 cctgtagtcccagcac----------------------------tttgggaaggggagacaggaggattgcttgaggcccacagttggagaccagtgtgggcaagatagcaagaccctgtctctctgtctt i papAnu2.chr1 C 0 C 0 s calJac3.chr21 50435096 92 - 50472720 cctgtagtcccagcac----------------------------tttgggagagggagacaagaggattgcttcaggcccagagctgggga-----------aagatagcaagatcctgactctCTCTCTA i calJac3.chr21 C 0 C 0 e rheMac3.chr1 128203559 144 + 229590362 I a score=10696.000000 s hg38.chr1_KI270765v1_alt 53235 15 + 185285 --TCatatatatacata s panTro4.chr1_AACZ03149435_random 162298 15 + 173505 --TCatatatatacata i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11238910 15 + 72422247 --ACatatatatatata i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56433224 15 - 109391073 --TCatatatacatata i nomLeu3.chr12 C 0 C 0 s papAnu2.chr1 98618646 15 - 220367699 --tcatatatatgtgaa i papAnu2.chr1 C 0 I 5 s calJac3.chr21 50435188 15 - 50472720 TCTcatacacacaca-- i calJac3.chr21 C 0 C 0 e rheMac3.chr1 128203559 144 + 229590362 I e macFas5.chr1 124789536 0 - 227556264 C a score=1519.000000 s hg38.chr1_KI270765v1_alt 53250 5 + 185285 cacat s panTro4.chr1_AACZ03149435_random 162313 5 + 173505 tatat i panTro4.chr1_AACZ03149435_random C 0 C 0 s nomLeu3.chr12 56433239 5 - 109391073 tatat i nomLeu3.chr12 C 0 C 0 s calJac3.chr21 50435203 5 - 50472720 catac i calJac3.chr21 C 0 C 0 e rheMac3.chr1 128203559 144 + 229590362 I e ponAbe2.chrUn 11238925 0 + 72422247 C e papAnu2.chr1 98618661 5 - 220367699 I e macFas5.chr1 124789536 0 - 227556264 C a score=6852.000000 s hg38.chr1_KI270765v1_alt 53255 35 + 185285 atatatatatatgtatatatacatacacatatata s ponAbe2.chrUn 11238925 28 + 72422247 -tatatatatatgtatatatgtata------tata i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56433244 35 - 109391073 acatatatatatatatatatagatagatatacaca i nomLeu3.chr12 C 0 C 0 s calJac3.chr21 50435208 35 - 50472720 agacacacacacacacacacacacacacacccaca i calJac3.chr21 C 0 C 0 e rheMac3.chr1 128203559 144 + 229590362 I e papAnu2.chr1 98618661 5 - 220367699 I e macFas5.chr1 124789536 0 - 227556264 C e panTro4.chr1_AACZ03149435_random 162318 0 + 173505 C a score=1850.000000 s hg38.chr1_KI270765v1_alt 53290 13 + 185285 tatatgtatatat s ponAbe2.chrUn 11238953 13 + 72422247 tgtgtgtatatat i ponAbe2.chrUn C 0 C 0 s calJac3.chr21 50435243 13 - 50472720 cacacatatacat i calJac3.chr21 C 0 C 0 e rheMac3.chr1 128203559 144 + 229590362 I e papAnu2.chr1 98618661 5 - 220367699 I e macFas5.chr1 124789536 0 - 227556264 C e nomLeu3.chr12 56433279 0 - 109391073 C e panTro4.chr1_AACZ03149435_random 162318 0 + 173505 C a score=2721.000000 s hg38.chr1_KI270765v1_alt 53303 74 + 185285 acatacacatatatatatatgtatatatacatacacatatatatatgtatatatacatatatatatacacacac s ponAbe2.chrUn 11238966 62 + 72422247 g--------tatatatgtgtgtatatatatataca-gtatatatgtttatatataga---atatatacacatat i ponAbe2.chrUn C 0 C 0 e calJac3.chr21 50435256 0 - 50472720 C e rheMac3.chr1 128203559 144 + 229590362 I e papAnu2.chr1 98618661 5 - 220367699 I e macFas5.chr1 124789536 0 - 227556264 C e nomLeu3.chr12 56433279 0 - 109391073 C e panTro4.chr1_AACZ03149435_random 162318 0 + 173505 C a score=6264.000000 s hg38.chr1_KI270765v1_alt 53377 38 + 185285 atatat---atacacacacatatatatacacatatatatac s panTro4.chr1_AACZ03149435_random 162318 38 + 173505 atatac---acacacacacatatatatatacacatatatat i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11239028 40 + 72422247 atatactgtatatatatac-tatatatacacatatatatgc i ponAbe2.chrUn C 0 I 55 e calJac3.chr21 50435256 0 - 50472720 C e rheMac3.chr1 128203559 144 + 229590362 I e papAnu2.chr1 98618661 5 - 220367699 I e macFas5.chr1 124789536 0 - 227556264 C e nomLeu3.chr12 56433279 0 - 109391073 C a score=3097.000000 s hg38.chr1_KI270765v1_alt 53415 40 + 185285 gtgctcatgtgtatgtatatatatgtgtgt----atatatatgc s panTro4.chr1_AACZ03149435_random 162356 44 + 173505 gtactcatgtgtatgtatatatatgtgtgtgtatatatatatgc i panTro4.chr1_AACZ03149435_random C 0 C 0 e calJac3.chr21 50435256 0 - 50472720 C e rheMac3.chr1 128203559 144 + 229590362 I e ponAbe2.chrUn 11239068 55 + 72422247 I e papAnu2.chr1 98618661 5 - 220367699 I e macFas5.chr1 124789536 0 - 227556264 C e nomLeu3.chr12 56433279 0 - 109391073 C a score=2842.000000 s hg38.chr1_KI270765v1_alt 53455 12 + 185285 tcatatatatgt s panTro4.chr1_AACZ03149435_random 162400 12 + 173505 tcatatatatgt i panTro4.chr1_AACZ03149435_random C 0 C 0 s macFas5.chr1 124789536 12 - 227556264 TCATATGTGTGT i macFas5.chr1 C 0 C 0 e calJac3.chr21 50435256 0 - 50472720 C e rheMac3.chr1 128203559 144 + 229590362 I e ponAbe2.chrUn 11239068 55 + 72422247 I e papAnu2.chr1 98618661 5 - 220367699 I e nomLeu3.chr12 56433279 0 - 109391073 C a score=4531.000000 s hg38.chr1_KI270765v1_alt 53467 13 + 185285 atatatgtgtgtg s panTro4.chr1_AACZ03149435_random 162412 13 + 173505 atatatGTGTGTg i panTro4.chr1_AACZ03149435_random C 0 C 0 s rheMac3.chr1 128203703 13 + 229590362 ATATGTGTGTGTG i rheMac3.chr1 I 144 C 0 s macFas5.chr1 124789548 13 - 227556264 GTGTGtatatata i macFas5.chr1 C 0 C 0 e calJac3.chr21 50435256 0 - 50472720 C e ponAbe2.chrUn 11239068 55 + 72422247 I e papAnu2.chr1 98618661 5 - 220367699 I e nomLeu3.chr12 56433279 0 - 109391073 C a score=13418.000000 s hg38.chr1_KI270765v1_alt 53480 17 + 185285 tatatatataca------tatac s panTro4.chr1_AACZ03149435_random 162425 23 + 173505 tatatatatacacacacatatac i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11239123 17 + 72422247 tatatatatatg------tacac i ponAbe2.chrUn I 55 C 0 s nomLeu3.chr12 56433279 17 - 109391073 cacatacacaca------cacac i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128203716 17 + 229590362 tatatatatata------cacat i rheMac3.chr1 C 0 C 0 s macFas5.chr1 124789561 17 - 227556264 tatatatataca------cacat i macFas5.chr1 C 0 C 0 e calJac3.chr21 50435256 0 - 50472720 C e papAnu2.chr1 98618661 5 - 220367699 I a score=11812.000000 s hg38.chr1_KI270765v1_alt 53497 7 + 185285 acacata s panTro4.chr1_AACZ03149435_random 162448 7 + 173505 acacata i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11239140 7 + 72422247 acacaca i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56433296 7 - 109391073 acacaca i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128203733 7 + 229590362 acacata i rheMac3.chr1 C 0 C 0 s macFas5.chr1 124789578 7 - 227556264 acacata i macFas5.chr1 C 0 C 0 s calJac3.chr21 50435256 7 - 50472720 acacatg i calJac3.chr21 C 0 C 0 e papAnu2.chr1 98618661 5 - 220367699 I a score=1139771.000000 s hg38.chr1_KI270765v1_alt 53504 546 + 185285 catacatacatCGTGAATGTTCTAGATTCATCCTAAGTTCCACCAACAGTACACTTAAAGTAAAATGTGCCGAACCTGAGGGTCAAACCTACCTGCTGACGTGTAATTTGTGTTTGTGAGACATTCTCAACAGCATTTGCTTT--------CCCCTAGCATAGTGGTTTTCGTGTTTTCCTCACATCTGAATGTCTTCAGTGCAAAACCTGTCAGAATTCATTTCCTTTGCCGAAAGATTCTAAAATACTTTCTTTTTTTT-------------------------TTTTTT----GAGAtcagcgcactgcaacttccacttcccaagttcaaaggattctcctgcctcagcctcgtgagtagctgggactacaggcctgagccaacacaggcggctaatttttgtatttttagtagagacggagtttcaccatgttggccaggctggtctcaaattcctgacctcaagtaatctg-cccaccttggcctcccaaagtgttgggattacaggc---gtgagccaccttgcccagccTAAAATACTCTTACTTCAAGCAAAAGTGCATTAAAAACTAACTTCTCAGT s panTro4.chr1_AACZ03149435_random 162455 550 + 173505 catacatacatcgtgaatgtCCTAGATTCATCCTAAGTTCCACCAACAGTACACTTAAAGTAAAATGTGCCGAACCTGAGGGTCAAACCTACCTGCTGACGTGTAATTTGTGTTTGTGAGACATTCTCAACAGCATTTGCTTT--------CCCCTAGCATAGTGGTTTTCGTGTTTTCCTCACATCTGAATGTCTTCAGTGCAAAACCTGTCAGAATTCATTTCCTTTGCCAAAAGATTCTAAAATACTTTCTTTTTTTT-------------------------TTTTTTTTTTGAGAtcagcgcactgcaacttccacttcccaagttcacaggattctcctgcctcagcctcgcgagtagctgggactacaggcctgcgccaacacaggcggctaatttttgtatttttagtagagacggagtttcaccatgttggccaggctggtctcaaattcctgacctcaagtaatctg-cccaccttggcctcccaaagtgttgggattacaggc---atgagccaccttgcccagccTAAAATACTCTTACTTCAAGCAAAAGTGCATTAAAAACAAACTTCTCAGT i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11239147 533 + 72422247 catacataAATC---AACGTCCTAGATTCATCTTAAATTCCACCAACAGTGCACTTAAAGTAAAATGTACCCAACCTGAGGGTCAAACCTACCTGCTAACATGCAATTTGTGTTTGTGGGACATTCTCAACAGCATTTGCTT----------CCCTAGCATAGTGGTTTTCATGTTTTCCTCACACCTGAATGTCTTAAGTGCAAAACCTGTCAGAAATCATTTCCTTTGCCAAAAGATTCTAAAATACTTTTTTTTTTTT-----------------------------------GAGAtcagctcagtgcaacttccacttcccatgttcacaggattctcctgcctcagcttcatgagtagctgggactacaggcctgtgccaacacacccagctaatttttgtatttttagtagagac--agtttcaccatgttggccaggatggtctcaaactccttacctcaagtaatccg-cccacctcagcctcccaaagtgttgggattacaggg---gtaagccactgcacctggccTAAAATACTCTTACTCCAAGTAAAAGTGCATTAAAAACAAACTTCTCAGT i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56433303 544 - 109391073 cacacatacatCGTGAATGTCCTATATTCATCTTAAGTTCCACCAACAGTGCACTTAAAGTAAAATGTGCCGAACCTGAGGGTCAAACCTACCTACTGATGTGTAATTTGTGTTTGTGAGACATTCTCAACAGCATTTGCTTT---------CCCTAGCATAGTAGTTTTCGTGTTTTCCTCACATCTGAATGTCTTAAGTGCAAAACCTGTCAGAATTCATTTCCTTTGCCAAAAGTTTCTAAGATACtttttttttttt-------------------------ttttt-----GAGAtcagcgcactgcaacttccacttcccaagttcacaggattctcctgcctcagccttgtgagtagctgggactacaggcctatgccaacacagccggctaatttttgtatttttagtagagacggagtttcaccatgttggccaggctggtctcaaactcctgacctcaagtaatctg-cccacctcggccttccaaagtgttgggattacaggc---atgagccaccttgcccggccTAAAATACTCTTACTTCAAGTAAAAGTGCATTAAAAACAAACTTCTCAGT i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128203740 581 + 229590362 cacacatacatCGTGAATGTCCTAGATTCATCTTAAGTTCCACCAACAGTGCATTTAAAATAAAATGTGCCCAACCTGAGGGTAAAACCTATCTGCTGACATGTAATTTGTGTTTGTGAGACATTCTCAACAGCATTTGCTTTCCCTAGCATCCCTAGCATAGTGGTTCTCTTGTTTTCCTCACGCCTGAATGTCTTAAGTGCAAAACCTGTCAGAATTCATTTCCTTTGCCAAAAGATTCTATAATACTTTTTTTTTTTCAAGATCAGCTCACCGCAACTTCCACCTCCCAT---GAGAtcagctcactgcaacttccacctcccatgttcacaggattctcctgcctcagcctcgcaattagctcagactacaggcctgcgccaacacacccagctgatttttgtacttttggtagagacggagtttcaccatgttggccaggctggtctcaaacttctgaccttaagtaatctgtcccacctcggcctcccaaagtgttgggattacaggc---atgagccaccgcactgggcTTAAAATATTCTTACTTCAAGTAAAAGTGCATTAAAAACAAACTTCTCAGT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 124789585 550 - 227556264 cacacatacatTGTGAATGTCCTAGATTCATCTTAAGTTCCACCAACAGTGCATTTAAAATAAAATGTGCCCAACCTGAGGGTAAAACCTATCTGCTGACATGTAATTTGTGTTTGTGAGACATTCTCAACAGCATTTGCTTTCCCTAGCATCCCTAGCATAGTGGTTCTCTTGTTTTCCTCAAGCCTGAATGTCTTAAGTGCAAAACCTGTCAGAATTCATTTCCTTTGCCAAAAGATTCTATAATACTTTTTTTTTTTT-------------------------------C---GAGAtcagctcactgcaacttccacctcccatgttcacaggattctcctgcctcagcctcgcaattagctcagactacgggcctgcgccaacacacccagctgatttttgtacttttggtagagacggagtttcaccatgttggccaggctggtctcaaacttctgaccttaagtaatctgtcccacctcggcctcccaaagtgttgggattacaggc---gtgagccaccgcaccgggccTAAAATACTCTTACTTCAAGTAAAAGTGCATTAAAAACAAACTTCTCAGT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98618666 546 - 220367699 CATACATATATCGTGAATGTCCTAGATTCATCTtaagttccaccaacagtgcactTGAAGTAAAATGTGCCCAACCTGAGGGTCAAACCTACCTACTGACATGTAATTTGTGTTTGTGAGACATTCTCAACAGCATTTGTTT---------TACCTAGCATAGTGGTTTTCAAGTTTTCATCACACTTGAATGTCTTAAGTGCAAAACTTGtcaaaattcatttcctttgccaaaaaattctaaaatactttttttttttt-------------------------ttttttt---gagatcagttcactgcaacttccacttcccatgTTCAcaggattcttctgcctcagcctcacgagtaggtgggactacaggcctgcgacaacacacccggctaatttttgtatttttagtagagacggagtttcaccatattggccaggctggtctcaaagtcctgatcttacgtaatctg-cccacctcggcctcccaaagtgttgggattacaagc---acgagccaccgcgcccggcctaaaatactCTTACTTCAAGTTAAAgtgcattaaaaacaaatttctcagT i papAnu2.chr1 I 5 I 620 s calJac3.chr21 50435263 526 - 50472720 catacatacaTTGTGAATGTCCTAGATTCATCCTAAGTTGCGCCAACAGTGCACTTAAAGTAAAACATGCCCACCCTGAGGGTCAGACCCATCCGCTGACGTGTAATTTGTGTTTGTGAGACATTCTCAACAGCATTTGCTTT---------CCCCAGCCTAGTGGTTTTCATGTTT---TCACACCTGAATGCCTTCAGTGCAAAACCTGTCAGAAACTATTTCCTTTGCC-AAAGattataaaatactttttttttttt-------------------------tttt---------atcaactcactgcaacctccacgtcccaggttcacaggattctcctgcctcagcttcccaagtagctgggactacaggccggtaccaacatatctggctgatatttgtattcttactagagacagagcttcaccatattggccaggctggtctcgaattcctgacctca--tgatctg-ccctccttagcctcccaaaatgttgggattacagatgtggtgagccagcaagcccATCCTAAAATACTCTTATGTCAAGTAAAAATGGGT-----------TTCTCATT i calJac3.chr21 C 0 C 0 a score=149638.000000 s hg38.chr1_KI270765v1_alt 54050 63 + 185285 TGCATCCCTGGAATCCATAGAAAGCCCGGGAGAGACAATCAAGTGCTACAGGATCAAGCGCTA s panTro4.chr1_AACZ03149435_random 163005 63 + 173505 TGCATCCCTGGAATCCATAGAAAGCCCGGGAGAGACAATCAAGTGCTACAGGATCAATCGCTA i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11239680 63 + 72422247 TGCATCCCTGGAATCCGTAGAAAGCCCAAGAGAGACAATCAAGTGCTACAGGATCAAGCACTA i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56433847 63 - 109391073 TGCATCCCTGGAATCCATGGAAAGCCCGGGAGAGACAATCAAGTGCTACAGGATCAAGTGCTA i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128204321 63 + 229590362 TGCATCCCTGGAATCCATAGAAAGTCCAGGAGAGACAATCAAGTGCTACAGGATCAAGTGCTA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 124790135 63 - 227556264 TGCATCCCTGGAATCCATAGAAAGTCCAGGAGAGACAATCAAGTGCTACAGGATCAAGTGCTA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98619832 63 - 220367699 tGCATCCCTGGAATCCATAGAAAGCCCGGGAGAGACAATCAAGTGCTACAGGATAAAACacta i papAnu2.chr1 I 620 I 1770 s calJac3.chr21 50435789 63 - 50472720 TGCATCCCTGGAACCCATAGAAAGCCTGGGAGAGACAATCAAGTGCTACAGAGGCAAGCACTA i calJac3.chr21 C 0 C 0 a score=1656669.000000 s hg38.chr1_KI270765v1_alt 54113 1023 + 185285 AACAGGGGAGGACAAAACATGGCTTCCTAACTAGGAGTCAGGGCAAAGTTATCTGCTTTGGTCTCCAATGGAGACCGGCACTTGGTTCACCTGCGACGGGAGGACCCGGCCCAGAGGAGGCGGACTTTCTCTTCATGGTGCCTTCAGACAGGAAATCTCCTAGGATTCCTTTCTTTCCCTTTGATCTACTCCCAACGCTCCCTTTCTGTTTCTTCAAGACCTTTTTTGGATCCCCACTGCGCAGGACCTAAGGGGCTGGTGCCCTTCCCTA-----CCCTTCCTGCCTGGGTGTCTTCAGCACCCATGCTCACCCAGAACGTTACTGCCTGCCAGAGAGAGCGAGAGGACCAAGGAGGGCGGTGGGTGCAGTGGGAAC--CAGAGTCACCGTGTGCCTGTGCCTCGTGGGCTCCTCGCAGATTGAATAAACGCCCCCTGAAGCTTCTCTGCAGGTCACAGGGAAGGGGAGGGTGGCTGCCGACCCGGCGGGAGAAGCGTCAAGAAGCGTCGGGAGGACCTGACCCTACCCCTGGACCTTGAAGACAGGCCTGGCCAGGCTGATTTTAATGGATAGGCCCAAGGAAAAGGCTCAAGGGCGGCCCAAACCCCGACCCTGAGATTAAGGCTTTCAAATGTCTGAACGGTTTGATGTTGGTCAGTAGAATCCATCCCACCTTT-ATCACGAGAC-TCCTTTGCCAAAATTCAGAgatctgggattcctgctggttgccgcacagaaagccaatcaccgagacgcttatcgccaaggaaggcactttaatagggtgctgcagtgggggagatgagaactc-agtctcaaatccatctccctgaccaaccaaaaccagaggtttagatggcagggaagaaatgttaacaatgagtaagaaaacaggaactagggaggagcaaggaagcaatcatgatgaatgaggggtcccagcatctcattttctggatgaatttcagtactttgatagcttttttgacaggcctgaaggtcatttcctgaggaaggaactcagataa s panTro4.chr1_AACZ03149435_random 163068 1023 + 173505 AACAGGGGAGGACAAGGCATGGCTTCCTAACTAGGAGTCAGGTCAAAGTTATCTGCTTTGGTCTCCAATGGAGACCGGCACTTGATTCACCTGCGACGGGAGGACCCGGCCCAGAGGAGGCGGACTTTCTCTTCATGGTGCCTTCAGACAGGAAATCTCCTAGGATTTCTTTCTTTCCCTTTGATCTACTCCCAACTCTCCCTTTCTGTTTCTTCAAGACCTTTTTTGGATCCCTACTGCGCAGGACCTAAGGGGCTGGTGCCCTTCCCTA-----CCCTCCCTGCCTGGGTGTCTTCAGCACCCATGCTCACCCAGAACATTACTGCCTGCCAGCGAGAGCGAGAGGACCAAGGAGGGCGGTGGGTGCAGTGGGAAC--CAGAGTCACCGTGTGCCTGTGCCTTGTGGGCTCCTCGCAAATTGAATAAACGCCCCCTGAAGCTTCTCTGCAGGTCACAGGGAAGGGGAGGGTGGCTGCCGACCCGGCGGGAGAAGCGTCAAGAAGCGTCGGGAGGACCTGACCCTACCCCTGGACCTTGAAGACAGGCCTGGCCAGGCTGATTTTAATGGATAGGCCCAAGGAAAAGGCTCAAGGGCGGCCCAAACCCCGACCCTGAGATTAAGGCTTTCAAATGTCTGAACGTTTTGATGTTGGTCAGTAGAATCCATCCCACCTTT-ATCACGAGAC-TCCTTTGCCAAAATTCAGAgatctgggattcctgctggttgccgcacagaaagccaatcaccgagacgattatcgccaaggaaggcactttaatagggtgctgcagtgggggagatgagaactc-agtctcaaatccatctccctgaccaaccaaaaccagaggtttagatggcagggaagaaatgttaacaatgagtaagaaaacaggaactagggagaagcaaggaagcaatcatgatgaatgaggggtcccagcatctcattttccggatgaatttcagtactttgatagcttttttgacaggcctgaaggtcatttcctgaggaaggaactcagataa i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11239743 1024 + 72422247 AACAGGGGAGGACAAAGTGTGGCTTCCTCACTAGGAGTCAGGGCAAAGTTAACTGCCTTGGTTTCCAATGGAGCCCGGACCTTTGTTCACCTGCAATGGGAGGACGCAGCCCAGAGGAGGTGGACTTTCTCTTCATGGTGCCTTCAGATAGGAAATCTCCTAGGATTTCTTTCTTTCCCTTTGATCTACTCCCAATGCTCCCTTTCTGTTTCTTCAAGACCTTTTTTGGATCCCTACTGTGCAAGACCTAAGGAGCTGGTGCTCTTCCTTA-----CCCTCCCTGCCTGGGTGTCTTCAGCATCCAAGCTCACCCAGAATGTTACTTCCTGCCAGAGACAGCAAGAAGACCAAGGAGGGCGGCAGGTGCAGTGGAACC-ACAGCATCACCGTGTACCTGTGCCTCATGGGCTCCGAGCAAATTGAATAAATGCCCCCTGAAGCTTTTCTGCAGGTCACAGGGAAGGGGAGGGTGGCTGCTGACCTGGCAAGGGAAGTGTCAAGAAGTGTCGGGAGGACCTGACTGTACCCCTGGACCTTGAAGACAGGCCTGGCTAGGCTGATTTTAATGGGTAGGCCAAAGGAAAAGGCTCAAGGGCAACCCAAACCCCAACCCTGAGATTACAGCTTTCAAATGTCTGATCATTCTGATGATGGTCAGTAGAATCCATCCCACCTTT-ATCAGGAGAC-TCCTttgccaaaattccaagatctgggattcctgctggttgccacagagaaagccaatcaccgagatgattacagccaaggaaggcactttaatagggtgatgcagtaggggagatgagaactcaagtctcaaatccatctccaagaccaaccaaaaccagaggttttgatggcagggaagaaatg-taacaatgtgtaagaaaacaggaactagggaggagcaaggaagccatcatgatgaatgaggggtcccagcatctcactgtctggatgaatttcagttctttgatagcttttttgacaggcctgaaggtcttttcctgaggaaggaactcagataa i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56433910 1022 - 109391073 AACAGGGGAGGACAAAGCATGGCTTCCTAACTAGGAGTCAGGGCAAAGTTATCTGCTTTGGTCTCCAATGGAGACAGGAACTTGGTTCACCTGTGACCGGAGGACCTGGCCTAGGGGAGGCGGACTTTCTCTTCATGGTGCCTTCAGATAGGAAATCTCCTAGGATTTCTTTCTTTCCCTGTGATCTACACCCAACGCTCCCTTTCTGTTTCTTCAAGACCTTTTTTGGATCCCTACTGCACAGGACCTAAGGGGCTGGTGCCCTTCCCTA-----CCCTCCCTGCCTGCGTGTCTTCAGCACCCAAGCTCACCCAGAACATTACTGCCTGCCAGAGAGAGCGAGAGGACCAAGGAGGGCGGTGGGTGCAGTGGGAAC--CAGAGTCACCGTGTGCCTGTGCCTTGTGGGCTCCTAGCAAATTGAATAAACGCCCCCTGAAGCTTCTCTGCAGGTCACAGGGAAGGGGAGGGTGGCTGCCGACCCAGCGGGAGAAGCGTCAAGAAGCGTCGGGAGGACCTGACCCTACCCCTGGACCTTGAAGACAGGCCTGGCCAGGCTGATTTTAATGGATAGGCCCAAGGAAAAGGCTCAAGGGTGGCCCAAACTCCAACCCTGAGATTAAGGCTTTCAAATGTCTAAACATTTTGATGTTGGTCAGTAGAATCCATCCCGCCTTT-ATCAGGAGAC-TCATTTGCCAAAATTCAGAggtctgggattcctgctggttgccgcacagaaagccaatcaccgagacgattgttgccaaggaaggcactttaatagggtgctgcagtgggggagatgagaactc-agtctcaaatccatctccctgaccaaccaaaaccagaggtttagatggcagggaagaaatg-taacaatgagtaagaaaacagaaactagggaggagcaaggaagcaatcatgatgaatgaggggtcccagcatctcattttctggatgaatttcagttctttgatagcttttttgacaggcctgaaggtcatttcctgaggaaggaactcagataa i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128204384 1021 + 229590362 AACAGGGGAGGACAACGCGTGGCTTCCTCACTAGGAGTCAGG-CAAAGTTATCTGCTTTGGTCTCCAATGGAGACCGGAACTCGGTTCACCTGCAACGGGAGGACACGGCCCAGAGGAGGCGGCCTTTCTCTTCATGGTGCCTTCAGATGGGAAATCTCCTAGGATTTCTTTCTTTCCCTTTGATCTACTCCCAACACTCCCTTTCTGTTTCTTCAAGACCTTTTTTGGATCCCTAATGTGCAGGACCTAAGGGACTGGTGCCCTTCCTTA-----CCCTCCCTGTCTGTGTGTCTTCAGCGCCCAAGCTCACCCAGAACATTTTTGCCTGCCAGAGACAGTGAGAGGACCAAGGAGGGTGGCGGGTGCAGTGGGAACCACAGAGTCACCATGTACCTGTGCCTCGTGGGCTCCTAGCCAATTGAATAAACATCCCCTGAAGCTTCTCTGCAGGTCACAGCGAAGGACAGGGTGGCTGCCGACCCAGTGAGAGAAGCATCAAGAAGCATCGGGAGGACCTGACCCTACCCCTGGACCTTGAAGACAAGCCTGGCTAGGCTGATTTTAATGGGTAGACCCAAGGAAAAGGCTCAAGGGTGACCCAAAGTCTGACCCTGACATTAAGGCTTTCACATGTCTGATCGTTTTGATGTTGGTCAGTAGAATCCACCCCCCTTT---TCAGGAGAC-TCCTTTGCCAAAATTCAGAgatctgggattcctgctgcttgccgcacagaaagccaatcaccaaggtgattattgccaaggaaggagctttaatagggtgctgcagtgggggagatgagaactc-agtctcaaatcgatctccctgaccaaccaaaaccagaggtttagattgcagggaagaaatg-taacaatgtgtaagaaaacaggaactagggaggagcaaggaagcaaccatgacgaatgaggggtcccagtatctcattgtctggatgaatttcagttccttgatagcttttttgagaggcccgaaggtcatttcctgatgacagaactcagataa i rheMac3.chr1 C 0 C 0 s macFas5.chr1 124790198 1021 - 227556264 AACAGGGGAGGACAACGCGTGGCTTCCTCACTAGGAGTCAGG-CAAAGTTATCTGCTTTGGTCTCCAATGGAGACCGGAACTCGGTTCACCTGCAACGGGAGGACACGGCCCAGAGGAGGCGGCCTTTCTCTTCATGGTGCCTTCAGATGGGAAATCTCCTAGGATTTCTTTCTTTCCCTTTGATCTACTCCCAACACTCCCTTTCTGTTTCTTCAAGACCTTTTTTGGATCCCTAATGTGCAGGACCTAAGGGACTGGTGCCCTTCCTTA-----CCCTCCCTGTCTGTGTGTCTTCAGCGCCCAAGCTCACCCAGAACATTATTGCCTGCCAGAGACAGTGAGAGGACCAAGGAGGGTGGCGGGTGCAGTGGGAACCACAGAGTCACCATGTACCTGTGCCTCGTGGGCTCCTAGCCAATTGAATAAACATCCCCTGAAGCTTCTCTGCAGGTCACAGCGAAGGACAGGGTGGCTGCCGACCCAGTGAGAGAAGCATCAAGAAGCATCAGGAGGACCTGACCCTACCCCTGGACCTTGAAGACAAGCCTGGCTAGGCTGATTTTAATGGGTAGACCCAAGGAAAAGGCTCAAGGGTGACCCAAAGTCTGACCCTGAGATTAAGGCTTTCAGATGTCTGATCGTTTTGATGTTGGTCAGTAGAATCCACCCCCCTTT---TCAGGAGAC-TCCTTTGCCAAAATTCAGAgatctgggattcctgctgcttgccgcacagaaagccaatcaccaagatgattattgccaaggaaggagctttaatagggtgctgcagtgggggagatgagaactc-agtctcaaatctatctccctgaccaaccaaaaccagaggtttagattgcagggaagaaatg-taacaatgtgtaagaaaacaggaactagggaggagcaaggaagcaaccatgacgaatgaggggtcccagtatctcattgtctggatgaatttcagttccttgatagcttttttgagaggcccgaaggtcatttcctgatgacagaactcagataa i macFas5.chr1 C 0 C 0 s calJac3.chr21 50435852 1011 - 50472720 AGCAGGGGAGGACCAAGCGTGGCTTCCTCACTAGGAGACAGGGC--AGTTACCTGCTGTGGTCTCCAATGCAGACT-GAACTTGCTTCACCTGTGATGGGAGGACCCAGCCCAGAGGATGCACAGTTCCTCTTCATGGTGCCTTCAGATAGGAAAT---CTAGGATTTCACTCTTT--CGTTGATCTACTTCCAACTCTCCCTTTCTA---CTTCAAAACCTTTTTTGGATCCCTCCTGTGCAGGACATAAGGGGGTGGTGCCCTTATTTATTGGCCCCTCCCTGCCCGGGCATCTTTGGAGTCCAAGCTCACCAGGAACGTTACTGCCCACCAGAGACAGTGAGAGGACCAAGGAGGGTGGCAGGTGAGATGGGAACCACAGAGGAACCATGCACCTGCACCTCCAGGGCTCCTGGAAAATTGAATAAGTGTCTCCTGAAGCTTCTCTGTAGGTCACAGGGAAAGGGAGGGTGGCTGCCGACCCA-CGGGAGGTGCAACAAGAAGCGTCAGGAGGCCCTGGCCCTGCCACAGGA-CTTGAAGACAGGCCTGGCCAGGCTGATTTTGACCGGTAGGCCCAAAGAAGAGGCTCAAGGGTGGCCCAAACCCTGTCCCCGAGATTAAGGTTTTCAAATGTCTGATCATTTTCAGGCTGGTCAGTAGAAT-CGTCCCACTTCTAATCAGGGGGCGTCCTTTGCCAAAATTCAGAGACCTGGGGTttcttctgcttgctgcatagaaagccaatcaccaagatgattattgccaaggaaggggtttcaacagggagctgcagcgggggagatgagaactc-agtctcaaatccatctccccgaccaaccaaaaccagaggtttagatcgca-ggaagcagtg-taacaatgtctaagaaaacgggaactagg--tgaacaaggaagcaatcacagtgaatgagg---tccagcgtctcattgtgtggatggctttcagttctttgatagcttctttgagagggctgaaggtcatttcccgaggaaggaactcagataa i calJac3.chr21 C 0 C 0 e papAnu2.chr1 98619895 1770 - 220367699 I a score=7575.000000 s hg38.chr1_KI270765v1_alt 55136 9 + 185285 aacaaatac s panTro4.chr1_AACZ03149435_random 164091 9 + 173505 aacaaatac i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11240767 9 + 72422247 aacaaatat i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56434932 9 - 109391073 aacaaatat i nomLeu3.chr12 C 0 C 0 s calJac3.chr21 50436863 9 - 50472720 aacaaatac i calJac3.chr21 C 0 C 0 e rheMac3.chr1 128205405 0 + 229590362 C e papAnu2.chr1 98619895 1770 - 220367699 I e macFas5.chr1 124791219 0 - 227556264 C a score=402.000000 s hg38.chr1_KI270765v1_alt 55145 8 + 185285 taagtttc s panTro4.chr1_AACZ03149435_random 164100 8 + 173505 taagtttc i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11240776 8 + 72422247 taagtttc i ponAbe2.chrUn C 0 I 11 s nomLeu3.chr12 56434941 2 - 109391073 tt------ i nomLeu3.chr12 C 0 C 0 e calJac3.chr21 50436872 0 - 50472720 C e rheMac3.chr1 128205405 0 + 229590362 C e papAnu2.chr1 98619895 1770 - 220367699 I e macFas5.chr1 124791219 0 - 227556264 C a score=79618.000000 s hg38.chr1_KI270765v1_alt 55153 302 + 185285 tttc---------tttttttttttttttttgagacggagtcttgctctgtcgcccaggctggagtgcagtggcgcgatctcggctcactgcaacctccgcctcccaggttcatgccattctcctgcctcagcctcccgagcagttggggctacaggcacccaccaccacacccagctacttttttgtatttttagtagagacggggcttcaccgtgttagccaggatggtctcgatctcctgacctcgtgatccacccgcctcggcctcccaaagtgctgggattacaggcgtgagccaccgcacccggcc s panTro4.chr1_AACZ03149435_random 164108 311 + 173505 tttcttttttttttttttttttttttttttgagacggagtcttgctctgtcgcccaggctggagtgcagtggcgcgatctcggctcactgcaacctccgcctcccaggttcatgccattctcctgcctcagcctcccgagcagctgggactacaggcacccaccaccacacccagctacttttttgtatttttagtagagacggggtttcaccgtgttagccaggatggtctcgatctcctgacctcgtgatccacccgcctcggcctcccaaagtgctgggattacaggcgtgagccaccgcacccggcc i panTro4.chr1_AACZ03149435_random C 0 C 0 s nomLeu3.chr12 56434943 301 - 109391073 ---------tctttttttttttttttttttgagatggagtcttgctctgtcgcccaggctggagtgcagtggcgcgatctcggctcactgcaacctccgcctcccaggttcatgccattctcctgcctcagcctcctgagcagctgggactacaggtgcccaccaccatgcccagctacttttttgtatttttagtagagacggagtttcactgtgttagccaggatggtctcgatctcccgacctcacgatccaccc-cctcggcctcccaaagtgctgagattacaggcgtgagccaccgcgcctggcc i nomLeu3.chr12 C 0 C 0 e calJac3.chr21 50436872 0 - 50472720 C e rheMac3.chr1 128205405 0 + 229590362 C e ponAbe2.chrUn 11240784 11 + 72422247 I e papAnu2.chr1 98619895 1770 - 220367699 I e macFas5.chr1 124791219 0 - 227556264 C a score=7792.000000 s hg38.chr1_KI270765v1_alt 55455 9 + 185285 aacaaatat s panTro4.chr1_AACZ03149435_random 164419 9 + 173505 aacaaatac i panTro4.chr1_AACZ03149435_random C 0 C 0 s nomLeu3.chr12 56435244 9 - 109391073 aacaaatat i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128205405 9 + 229590362 aacaaatat i rheMac3.chr1 C 0 C 0 s macFas5.chr1 124791219 9 - 227556264 aacaaatat i macFas5.chr1 C 0 C 0 e calJac3.chr21 50436872 0 - 50472720 C e ponAbe2.chrUn 11240784 11 + 72422247 I e papAnu2.chr1 98619895 1770 - 220367699 I a score=30350.000000 s hg38.chr1_KI270765v1_alt 55464 29 + 185285 taagtttcaagctgtaagaccagaagggt s panTro4.chr1_AACZ03149435_random 164428 29 + 173505 taagtttcaagctgtaagaccagaagcgt i panTro4.chr1_AACZ03149435_random C 0 C 0 s nomLeu3.chr12 56435253 29 - 109391073 taagtttcaagctgtaagaccagaagggt i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128205414 29 + 229590362 taagtttcatgctttaagaccagaagggt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 124791228 29 - 227556264 taagtttcatgctttaagaccagaagggt i macFas5.chr1 C 0 C 0 s calJac3.chr21 50436872 28 - 50472720 taagtttcaagccttaacaccaaaaggt- i calJac3.chr21 C 0 C 0 e ponAbe2.chrUn 11240784 11 + 72422247 I e papAnu2.chr1 98619895 1770 - 220367699 I a score=696209.000000 s hg38.chr1_KI270765v1_alt 55493 461 + 185285 ccatttctaggtttatccaaaaaagctacatatgggactgtggggtggttttcaGACCAAGAAAGAAAAAGATTGTGCAGACCAAAGTCTGCAGTTAACCAAAGAAAAaacataattttctgaccaataggatgtatgggatcagagaatgaccaggctatagaagaaccg-ttttttgtcctgagcataggggaaggatgaagttgcaccaactaaggtggaattaagctgcagatggggaaaaatctggattttggttCAGAGCCCTGGGGT--------------------CTTCCTTGAAAGAAGAACCCTGTTTCGGTTTCTGCCTCTCTCTGAGTCCTTTTGGAGGTTGAGGATGCTGAGGTCTTGGTGCTTGGCCCCCTCTAGCCCTGAGTACTTCCCCTCCGGCAGGGCAACCTGGcccagtgcccaggtcccagctccagcgaccatttcccCCTACTTTGCTCCTAGCAAAG s panTro4.chr1_AACZ03149435_random 164457 461 + 173505 ccatttctaggtttatccaaaaaagctacatatgggactgtggggtggttttcaGACCAAGAAAGAAAAAGATTGTGCAGACCAAAGTCTGCAGTTAACCAAAGAAAAaacataattttctgaccaataggatgtatgggatcagagaatgaccaggctatagaagaaccg-ttttttgtcctgagcataggggaaggatgaagttgcaccaactaaggtggaattaagctgcagatggggaaaaatctggattttggttCAGAGCCCTGGGGT--------------------CTTCCTTGAAAGAAGAACCCTGTCTCGGTTTCTGCCTCTCTCTGAGTCCTTTTGGAGGTTGGGGATGCTGAGGTCTTGGTGCTTGGCCCCCTCTAGCCCTGAGTACTTCCCCTCCTGCAGGGCAACCTGGCCCAGTGCCCAGGTCCCAGCTCCAGCGACCATTTCCCCCTACTTTGCTCCTAGCAAAG i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11240795 458 + 72422247 ccatttgtaggtttatccaaacaagctacatatgggactgttgggtggttttcaGATCAAGAAAGAAAAAGATTGTGCAGACCAAAG--CACAGTTAACCAAAGAAAAaac--aattttctgaccaataggatgtatggggccagagaatgaccagcctatagaagaactg-ttttttgtcctgagcataagggaaggacaaagttgcaccagctaaggtgCAATTAAGCTGCAGATGGGCAAAAATCTGAATTTTGTTTCAGAGCCCTGGGGTCTTCCTCAAAAG----TCTCCTTCCTTGAAAGAGGAACCCTGTCTTGGTTTCTGCATCTCTCTGAGTCCTTTTGGAGGTTGAGAATCCTGAGTTCTTGGTGGTTGGCCCCCTCTAACCCTGAGT---------------TAGAAATGTAACCCAGTACCCAGGCCCCAGCTCCAGTGACCATTTCCCCCTACTTTGCTCCTAGCAAAG i ponAbe2.chrUn I 11 I 85 s nomLeu3.chr12 56435282 455 - 109391073 tcatttctaggtttatccaaagaagctacatatgggactgtggggtggttttcaGACCAAGAAAGAAAAAGATTGTGCAGACCAAAGTCTGCAGTTAACCAAAGAAAAaacataattttctgaccaataggatgtatgggatcagagaacgaccaggctgtagaagaactg-ttttttgtcctgagcacaggggaaggatgaagttgtaccaactaaggcggaattaagctgcagatggggaaaa------attttgGTTCAGAGCCCTGGGGT--------------------CTTCCTTGAAAGAAGAACCCTGTCTCGGTTTCTGCATCTCTCTGAGTCCTTTTGGAGGTTGAGGATGCTGAGGTCTTGGTGCTTGGCCCCCTCTAGCCCTGAGTACTTCCCCTCCTGCAGGGCAACCTGGCCCAGTACCCAGGTCCCAGCTCCAGCGACCGTCTCCCCCTACTTTGCTCCTAGCAGAG i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128205443 457 + 229590362 ccatttctaggtttatccaaaaatgctacatatgggactatagggtggttttcaGACCAAGAAAGAAAAAGATTGTGCAGACCGAAGTCTGCAGTTAACCAAAGGAGAAACATAATTTTCTGACCACTAGGATGTATGGGGCCAGAG-ACGAACAGCCTATAGAAAAACTGTTtttttgtcctgagcataggggaaggatgaagttgcaccaactaaggtggaattaagttgcagatggggaaaaatctggattttggttCAGAGCCCTGGGGTCTTCCTCGAAAG----TCTCTTTCCTTGAAAGAGGACCCCTGTCTCAGTTTCTGCATCTCTCTGAGTCCTTTTGGACCTT-------TTAAGGTCTTGGTGCTTGGCCCCCTCTAACCCTGAGTACTTCCCCTCCTGCAGGGCAACCTGGC-------------CCCAGCTCCAGTGACCATTTCCCCCTACTTTGCTCCTAGCAAAG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 124791257 458 - 227556264 ccatttctaggtttatccaaaaatgctacatatgggactatagggtggttttcaGACCAAGAAAGAAAAAGATTGTGCAGACCGAAGTCTGCAGTTAACCaaaggagaaacataattttctgaccactaggatgtatggggccagagaacgaacagcctacagaaaaactgtttttttgtcctgagcataggggaaggatgaagttgcaccaactaaggtggaattaagttgcagatggggaaaaatctggattttggttCAGAGCCCTGGGGTCTTCCTCGAAAG----TCTCTTTCCTTGAAAGAGGACCCCTGTCTCAGTTTCTGCATCTCTCTGAGTCCTTTTGGACCTT-------TTAAGGTCTTGGTGCTTGGCCCCCTCTAACCCTGAGTACTTCCCCTCCTGCAGGGCAACCTGGC-------------CCCAGCTCCAGTGACCATTTCCCCCTACTTTGCTCCTAGCAAAG i macFas5.chr1 C 0 C 0 s calJac3.chr21 50436900 469 - 50472720 tcatttctacgtttatccaaaaaagctacatatgagactattgggtggatttcaGACCAAGAAAG--AAAGACTGTGCAGAAGAAAGTCTACAGTTAACCAAAGAAAAAGCATCATTTTCTGACCAAT-GGATGTATGGGGCCAAAGAAGGGCCAGCCCGTAGAAGAACTG-Ttttttggcctgagcatagggg-aggatgaagtt-caccagctaaggtggAATTCAGGTGCACATGGGGGAAA-TCTGGGTTTTGGTTCAGAGCCTTGGGGTCCTCCTTAAAGGTCCTTCCTCTTCCTTGAAAGAGGAACTCTGTCTGGGTTTCTGAG----TCTGAGTACTTTTGGAGGTTGAGGATGCTGAGGTGTTGGTGCTCGGCCCCCTCTAACCCTGGGCACTTCCCCTTCTGCCGGGCAACCTGGTCCGGTACTCAGACCCCAGCTCT-GAGACCACCTCCTTTT-CTTTGCTCCTAGCAAAG i calJac3.chr21 C 0 C 0 e papAnu2.chr1 98619895 1770 - 220367699 I a score=4500.000000 s hg38.chr1_KI270765v1_alt 55954 3 + 185285 GCC s panTro4.chr1_AACZ03149435_random 164918 3 + 173505 GCC i panTro4.chr1_AACZ03149435_random C 0 C 0 s nomLeu3.chr12 56435737 3 - 109391073 GCC i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128205900 3 + 229590362 GCC i rheMac3.chr1 C 0 I 82 s macFas5.chr1 124791715 3 - 227556264 GCC i macFas5.chr1 C 0 I 63 s calJac3.chr21 50437369 3 - 50472720 GCC i calJac3.chr21 C 0 I 72 e ponAbe2.chrUn 11241253 85 + 72422247 I e papAnu2.chr1 98619895 1770 - 220367699 I a score=5000.000000 s hg38.chr1_KI270765v1_alt 55957 13 + 185285 TGAAGGCCTAGCG s panTro4.chr1_AACZ03149435_random 164921 13 + 173505 TGAAGGCCTAGCG i panTro4.chr1_AACZ03149435_random C 0 C 0 s nomLeu3.chr12 56435740 13 - 109391073 TGCAGGCCTAGCG i nomLeu3.chr12 C 0 C 0 s macFas5.chr1 124791781 13 - 227556264 GGAAGGCCTTGAG i macFas5.chr1 I 63 I 6 s calJac3.chr21 50437444 11 - 50472720 TGAAGGCTGTG-- i calJac3.chr21 I 72 C 0 e rheMac3.chr1 128205903 82 + 229590362 I e ponAbe2.chrUn 11241253 85 + 72422247 I e papAnu2.chr1 98619895 1770 - 220367699 I a score=180677.000000 s hg38.chr1_KI270765v1_alt 55970 111 + 185285 GTTCCTGCAGAACCCCTGTCTCCCTCTTTTGGATAAAGCAGAGAGG-AAATGACCTGTGTGGAGGGAATCAGGGGCTGCATCTGCACGGAGGAGCTGAGGCAAGTAGGGCAG s panTro4.chr1_AACZ03149435_random 164934 111 + 173505 GTTCCTGCAGAACCGCTGTCTCCCTCTTTTGGATAAAGCAGAGAGG-AAATGACCTGTGTGGAGGGAATCAGGGGCTGCATCTGCACGGAGGAGCTGAGGCAAGTAGGGCAG i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11241338 111 + 72422247 GGTCCTGCAGAACCACTGTCTCCCTCTTTTGGAGAAAGCAGGGAGG-AAATGACCTTTGTGGAGGGAATCGAGGGCTGCACCTGCATAGAGGAGCTGAGGCAAACAGGGCAG i ponAbe2.chrUn I 85 C 0 s nomLeu3.chr12 56435753 112 - 109391073 GTTCCTGCAGAACCGCTGTCTCCCTCTTTCGGATAAAGCAGAGAGGAAAATGACCTGTGTGGAGGGAATCAGGGGCTGCATCTGCACGGAGGAGCTGAGGCAAGTAGGGCAG i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128205985 111 + 229590362 GGTCCTGCAGAACCACTGTCTCCCTCTTTTGGAGAAAGCAGGGAGG-AAATGACCTGTGTGGAGGGAATTGAGGGCTGCACCTGCATGGAGGAGCTGAGGCAAGCAGGGCAG i rheMac3.chr1 I 82 I 12 s macFas5.chr1 124791800 111 - 227556264 GGTCCTGCAGAACCACTGTCTCCCTCTTTTGGAGAAAGCAGGGAGG-AAATGACCTGTGTGGAGGGAATTGAGGGCTGCACCTGCATGGAGGAGCTGAGGCAAGCAGGGCAG i macFas5.chr1 I 6 I 1 s calJac3.chr21 50437455 106 - 50472720 -GTCCTGTGGAAGTA--GCCTCCCTCTTTTGGAGACGGCAGGGAGG-AAATGACATGTGTGGAGGGAAGCGAGGGCTGCACCTG--TGGAGGAGCTGAGGCAAGTGCGGCAG i calJac3.chr21 C 0 C 0 e papAnu2.chr1 98619895 1770 - 220367699 I a score=12702.000000 s hg38.chr1_KI270765v1_alt 56081 23 + 185285 TTGCGGTCTGTCAATGTAAAGGA s panTro4.chr1_AACZ03149435_random 165045 23 + 173505 TTGCGGTCTGTCAATGTAAAGGA i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11241449 23 + 72422247 TTCCAGTCTGTAAATGTAAAGGA i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56435865 23 - 109391073 TTGCAGTCTGTCAATGTAAAGGA i nomLeu3.chr12 C 0 C 0 s macFas5.chr1 124791912 13 - 227556264 TTGCC-----TCATTGGA----- i macFas5.chr1 I 1 C 0 s calJac3.chr21 50437561 23 - 50472720 TTCTGGGCTGTCAACGTAACGGA i calJac3.chr21 C 0 C 0 e rheMac3.chr1 128206096 12 + 229590362 I e papAnu2.chr1 98619895 1770 - 220367699 I a score=1028378.000000 s hg38.chr1_KI270765v1_alt 56104 660 + 185285 CATTTGCCATCCAGGAGGTTGGGCTGTTATTATTAGTTTTTAAATTCGTCAATACAAACTTCAGGGAAATGTGTCTTCTTACTTGTAGGAAcctcacaagacctcccatcttatattccagggagaattgctgcgtattacacgaacacataggtgagactgccattctgacctgcaggcctcgatgtcct-gtgcagggg-caccagggcactggcaaagccctttccatacaAAGAGCAAGCGTGTTATGTCTACAACCCAATGGCACCAGTTCCAAGTACAATTTCTACTTGGTTCTATGAGCTGAGTACATGTTCCCCCCAGCACAGAAATCCTACAAACTCCCATGAATGCTATAGGGAAAAGCAGGGGCTAgccaggtgtgatggatcatacgtgtaatcccagca----gtttagaaggccaaggcagggcagatcacttgagtccaggaattggagaccaacctgggcaacatggcgaaacttcaactcttaaaaaa-acaa------aacaacaacaacaacaac-aaaacaagaacagaaattagccggctgcgatggctcgtgcctgtgctactccagaggctgaggtgggaggatcgcttgaaccAAGATCCCACCAGATACAGTGAGACTCTGTCTCAGGGAAAAATACAAACAA----AAAAAA s panTro4.chr1_AACZ03149435_random 165068 666 + 173505 CATTTGCCATCCAGGAGGTTGGGCtgttattattaatttttaaattcgtcaatacaaacttcagggaaatttgtcttcttacttgGAGGAAcctcacaagacctcccatcttatattccagggagaattgctgcgtattacacgaacacataggtgagactgccattctgacctgcaggcctcgatgccct-gtgcagggg-caccagggcactggcaaagccctttccatacaAAGAGCAAGCGTGTTATGTCTACAACCCAATGGCACCAGTTCCAAGTACAATTTCTACTTGGTTCTATGAGCTGAGTACATGTTCCCCCCAGCACAGAAATCCCACAAACTCCCATGAATGCTATAGGGAAAAGCAGGGGCTAgccaggtgtgattgatcatacgtttaatcccagca----gtttagaaggccaaggcagggcagatcacttgagtccaggaattggagaccaacctgggcaacatggcgaaacttcaactcttaaaaaa-acaaaacaacaacaacaacaacaacaac-aaaacaagaacagaaattagccagctgcgatggctcgtgcctgtgctactccagaggctgaggtgggaggatcgcttgaaccAAGATCCCACCAGATACAGTGAGACTCTGTCTCAGGGAAAAATACAAACAA----AAAAAA i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11241472 663 + 72422247 CATTTGTCATCCAAGAGGCTGGGCTGTTATTATTAATTTTGAATTTTGTCAAAACAAGCTACAGGGAAATTTTTCTTCTTACTTGTAAGAAccttacaagacctctcatcttatattccagggagaattgctgcatattacacaaacacataggtgagactgccattctgacctgcaggccttgatgccctggcacagggg-caccagggcaccagcaaagcccttcccctacaAAGAGCAAGCATGTTATGTCTACAACCCATCGGCACCAGTCCCAAGTACAATTTCTACTTGGCTCTATGGACTGAGTACACGTTCCCCCCAGCACAGAAATCCTACAGACTCCCATGAATGCTATAGTGAAAAGCAGGGTCTggctaggtgtgatggatcacacctgtaatcccagca----gtttagaaggccgaggcagggtggatcactttagtccaggagtttgagaccaacctgggcaacatggtgaaacttcaactcttaaaaaa---aa------aaaaaaaacagcaacaac-aaaacaagaacagaaaatagctggctatggtggcttgtgcctgtgctactctagaggctgaggtggaaggattgcttgaaccaagatgccaccagatacagtgagaccctgtctcagggaaaaagacaaacaaaCAGAAAAAA i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56435888 660 - 109391073 CATTGGCCATCCAGGAGATTGGGCtgttattattaatttttaaatttgtcaatacaaacttcagggaaatttgtcttctcacttgtAGGAACCTCAAAAGACCTCTCATCTTATATTCCAGGGAGAATTGCTGCATATTACATGAACACGTAGGTGAGACTGCCATTCTGACCTGCAGGCCTCGATGCCCT-GTGCAGGGG-CACTAGGACACTGGCAAAGCCCTTCCCATACAAAGAGCAAGCGTGTTATGTCTACAACCCAATGGCACCAGTTTTAAGTACAATTTCTACTTGGTTCTATGAGCTGAGTACATGTTCCCCCCAGCACAGAAATCCTACAAGCTCCCGTGAATGCTACAGGGAAAAGCAGGGGCTAgccaggtgtgatggatcatacctgtaatcccagca----gtttagaaggccaaggcagggcggatcacttgagtccaggaattagagaccaacctgggcaacatggcgaaacttcaactcttaaaaaa-acaa------aacaacaacaacaacaac-aaaacaagaacagaaattagtcggctgcgatggctcgtgcctgtgctactccagaggctgaggtgggaggatcacttgaaccAAGATCCCACCAGATACAGTGAGACTCTGTCTCAGGGAAAAATACAAACCA----AAAAAA i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128206108 661 + 229590362 GATTTGTCATCCAAGAGGTTGGGCtgttattattaattttgaattttgtcaataccaactgcagggaaatttgtcgtcttacttgtAGGAAcctcacaagacctctcatcttatattccagggagaattgtttcgtattacataaacacataggtgagactgctgttctgacctgcaggcctcgatgcctt-gcacaaggg-caccaggacaccagcaaagcccttcccatacaAAGAGCAAGCATGTTATGTCTACAACCCAATGGCACCAGTTCCAAGTACAATTTGTACTTGGCTCTATGAGCTGAGTACACGTTCACCCTAGCACAGAAATTCTACAAACTCCCATGAATGCTATAGTGAAAAGCAGGG-CTggccaggtgtgatggatcacacctgtaatcccagca----gtttagaagtccaaggcagggtggatcacttgagtccaggagttggagaccaacctgggcaacagggcaaaacttcaactcttaaaaaaaacaa------aacaaccacaacaacaacaaaaacaagaacagaaattagccggctgtggtgactcacgcctgtgctactccagaggctcagacgggaggattgcttgaacAAAGATGCCACCAGATACAATGAGACTCGGTCTCAGGGAAAAAGACAAACAT----AAAGAA i rheMac3.chr1 I 12 C 0 s macFas5.chr1 124791925 659 - 227556264 --TTTGTCATCCAAGAGGTTGGGCtgttattattaattttgaattttgtcaataccaactgcagggaaatttgtcgtcttacttgtAGGAAcctcacaagacctctcatcttatattccagggagaattgtttcgtattacataaacacataggtgagactgctgttctgacctgcaggcctcgatgcctt-gcacaaggg-caccaggacaccagcaaagcccttcccatacaAAGAGCAAGCATGTTATGTCTACAACCCAATGGCACCAGTTCCAAGTACAATTTCTACTTGGCTCTATGAGCTGAGTACACGTTCCCCCCAGCACAGAAATCCTACAAACTCCCATGAATGCTATAGTGAAAAGCAGGG-CTggccaggtgtgatggatcacacctgtaatcccagca----gtttagaaggccaaggcagggtggatcacttgagtccaggagttggagaccaacctgggcaacatggcaaaacttcaactcttaaaaaaaacaa------aacaaccacaacaacaacaaaaacaagaacagaaattagccggctgtggtgactcacgcctgtgctactccagaggctcagacgggaggattgcttgaacAAAGATGCCACCAGATACAATAAGACTCGGTCTCAGGGAAAAAGACAAACAT----AAAGAA i macFas5.chr1 C 0 C 0 s calJac3.chr21 50437584 634 - 50472720 CATTTGTCACCCAAGTGGTTGGGCTGTTATTATTAA-TTTGAATTTTGTCAATAATAACTACATGGAAAGTT-TCTTCTTActtgtaggcacctcacaagacctctcatcttatattccagggagaattgctgcatatgacacgaacacatcggtgagactgcggttctgacctgcaggcctcgatgccct-gtgcaggggacaccagggcactggcaaagctcttcccatacaAGGAGCAAGTGTTTTAGGTCTACAACCCAATCGCACCAGCTCCGAGTACAATTTCTACTCGGCTCTATGAGCTGAGTACACGTTTCCGCCAGCACAGACATCCTACAAACTCGCGTGAACGCTGTGGCGAAAAGCAGGGAATggccgggtgtgaaggatcacacctgtcaacccagcactttatttaggaggcccaggcaaggcggatcactcgagtccagaagttggagatcgacctagaaaacatggcaaaacctcaactcttaaaaaa-agaa------agg----------------aagaaaagaaaatcaactagctagctgtggcggcgcatgcctgtgctattccagaggctgaagcaG------CATCTGGGTTCAACCTCCAGAGGATACAGTGAGACT--GTCTGAGGGGGGAAAAAAAAAAA---------- i calJac3.chr21 C 0 C 0 e papAnu2.chr1 98619895 1770 - 220367699 I a score=295533.000000 s hg38.chr1_KI270765v1_alt 56764 137 + 185285 GAGGCTCTGTAAGAGGTGACTCTGGGGACAATGGAAAAACACTAAGGTTTTCAAGTGGTGTTAAAAGCCAGTAGGCCTTGGGGACCACTGAGCAATCTACAAAGCAGGGAAGCCTAGA-TCCCTGAGCTCTGCCCGCC s panTro4.chr1_AACZ03149435_random 165734 137 + 173505 GAGGCTCTGTAAGAGGTGACTCCGGGGACAATGGAAAAACACTAAGGTTTTCAAGTGGTGTTAAAAGCCAGTAGGCCTTGGGGACCATTGAGCAATCTACAAAGCAGGGAAGCCTAGA-TCCCTGAGCTCTGCCCGCC i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11242135 137 + 72422247 GAGGCTGTGTAAGAGGTGACACTAGGGACAGAGGATAAACACTAAGGTTTTCAAGTAGTATTAGAAGCCAGTAGGCCTTGGGGACCATTGAGCAATCTACAAAGCAGGGAAGCCTAGA-TCCCTGAGCTCCACCTGCC i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56436548 137 - 109391073 GAGGCTATGTAAGAGGTGACTCTGGGGACAATGGAAAAACACTAAGGTTTTCAAGTGGTGTTAAAAGCCAGTAGGCCTTGGGGACCATTGAGTAATCTACAAAGCAGGGAAGCCTAGA-TCCCTGAGCTCTGCCTGCC i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128206769 137 + 229590362 GAGGCTGTGTAAGAGGCGACTCTAGGGACAGGGGAAAAACACTAAGGTTTTCAAATGGTGTTAAAAGCCAATAGGCCTTGGGGACCATTCAGCAATCTACAAAGCAGGGAAGCCTAGA-TCCCTGAGCTCTGCCTGAC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 124792584 137 - 227556264 GAGGCTGTGTAAGAGGCGACTCTAGGGACAGGGGAAAAACACTAAGGTTTTCAAATGGTGTTAAAAGCCAATAGGCCTTGGGGACCATTCAGCAATCTACAAAGCAGGGAAGCCTAGA-TCCCTGAGCTCTGCCTGAC i macFas5.chr1 C 0 C 0 s chlSab2.chr20_KE148049v1_random 80556 137 + 1557941 gagGCTTTGTAAGAGGTGATTCTGGGGACAGCAGAAAAACCCTGAGGTTTTCCAGTGGTGTTGAAAGCCAGTAGGCCCTGGGAACCATTGAGCAGTCCACAAAGTAGGGAAGCCTAGA-TCCCTGAGCTTCACCTGCC i chlSab2.chr20_KE148049v1_random N 0 C 0 s calJac3.chr21 50438218 138 - 50472720 GAGGGTGCGTAAGAGGTGACTCTGGGGACAGCGGAAAAACGCTAGGGTTTCCGAGCAGCGTTAAAAGCCAATAGGCCCCGAGGACCGTTGAGCAATCTAGAAAGCCGGCAAGTATAgattccctgaactccacccacc i calJac3.chr21 C 0 I 81 e papAnu2.chr1 98619895 1770 - 220367699 I a score=307567.000000 s hg38.chr1_KI270765v1_alt 56901 166 + 185285 AAGTACCACCACAGCTAACATGAGAGACCTCCCCCACAGAGACTGAAATTTGCCTCCTGAGGAAACAAGTGACTACAGACATCTGTCCCAGGACAGTAAACAAGAAAATAAGGTCTCACAAAAACAAAAACAGCTGACCACACCATACAATCACTGAGACCGGGCC s panTro4.chr1_AACZ03149435_random 165871 166 + 173505 AAGTACCACCACAGCTAACATGAGAGACCTCCCCCACAGAGACTGAAATTTGCCTCCTGAGGAAACAAGTGACTACAGACATCTGTCCCAGGACAGTAAACAAGAAAATAAGGTCTCACAAAAACAAAAACAGCTGACCACACCATACAATCACTGAGACCGGACC i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11242272 166 + 72422247 AAGTACCACTGCAGCTAACATGAGAGACCTCCCCCAGAGAGACTGAAATTTGCCTCCTGAGGAAACAAGTGACTATAGACATCTGTCCCAGGACAGTAAACAAGAAAACAAGGTCTCACAAAAACAAAAACAGCTGACCACACCATACAATCAGTGAGACCGAGCC i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56436685 166 - 109391073 AAGTACCACCACAGCTAACATGAGAGACCTCCCCCACAGAGACTGAAATTTGCCTCCTGAGGAAACAAGTGACTACAGACATCTGTCCCATGACAGTAAACAAGAAAACAAGGTCTCACAAAAACAAAAACAGCTGACCACACCATACAATCACTGAGACCGAGCC i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128206906 166 + 229590362 AAGTACCACTGCAGCTAATATGAGAGACCTCCCCCACAGAGACTGAAATTTGCCTTCCGAGGAAACAAGTGACTGCAGACATCTGTCCCAGGACAGTAGACAAGAAAACAAGGTCTCACAAAAACAAAAACAGCTGACCACACCATACAATCACTGAGACCGAGCC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 124792721 166 - 227556264 AAGTACCACTGCAGCTAATATGAGAGACCTCCCCCACAGAGACTGAAATTTGCCTTCCAAGGAAACAAGTGACTGCAGACATCTGTCCCAGGACAGTAGACAAGAAAACAAGGTCTCACAAAAACAAAAACAGCTGACCACACCATACAATCACTGAGACCGAGCC i macFas5.chr1 C 0 C 0 s chlSab2.chr20_KE148049v1_random 80693 166 + 1557941 AAGTGCCCCCGCAGCTAACCTGAGAGACCTCCCCCACAGAGGCTGAAATTTGCCTCCTGAGGAAACAAGTGACTACAGACATCTGTCCCAGGACAGTAAACAAGAAAACAAGGTCTCACAAAAACAAAAACAGCTGACCACACCATAGAATCACTGAGACCGAGTC i chlSab2.chr20_KE148049v1_random C 0 C 0 e calJac3.chr21 50438356 81 - 50472720 I e papAnu2.chr1 98619895 1770 - 220367699 I a score=30636.000000 s hg38.chr1_KI270765v1_alt 57067 26 + 185285 TGCGACTATAGATGAAAAAAGCAAAT---- s panTro4.chr1_AACZ03149435_random 166037 26 + 173505 TGCGACTATAGATGAAAAAAACAAAT---- i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11242438 24 + 72422247 TGTGACTATAGGTGAAAAAA--AAAG---- i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56436851 26 - 109391073 TGCGACTATAGGCGAAAAAAAAAAAT---- i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128207072 26 + 229590362 TGCGACTATAGGCGaaacaaacaaac---- i rheMac3.chr1 C 0 I 22 s macFas5.chr1 124792887 26 - 227556264 TGCGACTATAGGCGaaacaaacaaac---- i macFas5.chr1 C 0 I 22 s chlSab2.chr20_KE148049v1_random 80859 23 + 1557941 TGCGACTATAGGAGAATAAAAAT------- i chlSab2.chr20_KE148049v1_random C 0 C 0 s calJac3.chr21 50438437 30 - 50472720 TGCGGCCGTAGGCAAACGCGAAAAAGCTGA i calJac3.chr21 I 81 C 0 e papAnu2.chr1 98619895 1770 - 220367699 I a score=-887.000000 s hg38.chr1_KI270765v1_alt 57093 5 + 185285 GCTGT s panTro4.chr1_AACZ03149435_random 166063 1 + 173505 G---- i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11242462 5 + 72422247 GCTGT i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56436877 5 - 109391073 GCTGT i nomLeu3.chr12 C 0 C 0 s chlSab2.chr20_KE148049v1_random 80882 2 + 1557941 ---GT i chlSab2.chr20_KE148049v1_random C 0 I 3 s calJac3.chr21 50438467 1 - 50472720 ----T i calJac3.chr21 C 0 C 0 e rheMac3.chr1 128207098 22 + 229590362 I e papAnu2.chr1 98619895 1770 - 220367699 I e macFas5.chr1 124792913 22 - 227556264 I a score=108658.000000 s hg38.chr1_KI270765v1_alt 57098 52 + 185285 CTATTATTCATACCATGAAAGAccaggggaaagcacgaacgcagt-cccctac s panTro4.chr1_AACZ03149435_random 166064 52 + 173505 CTATTATTCATACCATGAAAGAccaggggaaagcacgaacgcagt-cccctac i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11242467 52 + 72422247 CTATTATTCATACCATGAAGGAccaggggaaagtgtgaacacagt-cccctac i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56436882 52 - 109391073 CTATTATTCATACCATGAAAGAccaggggaaagcacgaacgcagt-cccctac i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128207120 52 + 229590362 CTATTATTCATACCATGAAGGACCAGAGGAAATTGCGAATACAGT-CCCCTAC i rheMac3.chr1 I 22 C 0 s macFas5.chr1 124792935 52 - 227556264 CTATTATTCATACCATGAAGGACCAGAGGAAATTGCGAATACAGT-CCCCTAC i macFas5.chr1 I 22 C 0 s chlSab2.chr20_KE148049v1_random 80887 53 + 1557941 CTATCATTCATACCATGAAAGAccaggggaaagtgcgaacgcagtccccccac i chlSab2.chr20_KE148049v1_random I 3 C 0 s calJac3.chr21 50438468 51 - 50472720 CTACCATTTACACTGC-AAAGATcaggggaaagcgcgaacgcagt-cccccac i calJac3.chr21 C 0 C 0 e papAnu2.chr1 98619895 1770 - 220367699 I a score=620272.000000 s hg38.chr1_KI270765v1_alt 57150 397 + 185285 tactgttgcgggaatcaggagaacaaagagaccaacgggtggaacagaaggattttattgagtgcactcgggcctagcg-----------------tgagccccgaagaaagacagggggcttgacttttatacacacttctgaaagggggttggctagtttgaatggtgcagcaggaatttgatggtgcgaaactcgcggggcaggcaagagggcttacagaagcagaaagaaggcagttaatcaaactgtgacaggtcttgcaacgcaagcacagctggtaaccttgcagctgcactgaatggaaatcaggaactt-acaaaacttgAATAATGACAAGTGGCAAGGGGGAAAGACAAGGCAGTAAAGACATTTGTTG-TTTTTCCTCTTATACTTGCTGGGGGCGGACCGTGT s panTro4.chr1_AACZ03149435_random 166116 397 + 173505 tactgttgcgggaatcaggagaacaaagagaccaacgggtggaacagaaggattttattgagtgcactcgggcctagcg-----------------tgagccccgaagaaagacagggggcttgacttttatacacacttctgaaagggggttggctagtttgaatggtgcagcaggaatttgatggtgcgaaactcgcggggcaggcaagagggcttacagaagcagaaagaaggcagttaatcaaactgtgacaggtcttgcaacgcaagcacagctggtaaccttgcagctgcactgaatgtaaatcaggaactt-acaaaacttgaataatgacaagtggcaagggggaaagacaaggcagtaaagacatttgttg-tttttcctcttatacttgctgggggcggACCGTGT i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11242519 414 + 72422247 tactgttgtgggaatcaggagaacagagagaccaatgggtaaaacaggaggattttattgagtgcactcaggcccagcagattaaaatccaaaggctgagccctgaacaaagaca--aggcttgacttttatacacatttctgaaagggggttggctagtttgaatggcacagtgggaatttaaaggcgcaaaactcacggggcaggcaagagggcttacagaagcagaacaaaggcagctaatcaaactgtgacaggtcttgcaatgcaagcatagctggtgaccttgcagctgtactgaagggaaatcaggaacttaacaaaacttgaataaagagaaacggtaagggggaaagagaaggtagtaaagggatttgttgttttttcctcttacccttgctaggggcagactgtgt i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56436934 390 - 109391073 tactgttgcgggaatcaggagaacaaagagaccaatgagtggaagagaaggattttactgagtgcactcaggcctagcg-----------------tgagccccgaagaaagaca--gggcttgacttttatacacacttctgaaagagggttggctagtttgaatggtgcagcaggaatttgctggtgcaaaactcgcggggcaggcaagagggcttacagaagcagaaagaaggcagttaatcaaactgtgacaggtcttgcaacgcaagcatagctggtaaccttgcagctgcactgaagggaaatcaggaactt-caaaaac--gaataatgagaagtggcaagtgggaaagggtaggcagtaaagacacttg----tttttcCTCCTATACTTGCTGGGGGCAGAACTTGT i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128207172 413 + 229590362 TACtgttgcaggaatcaggagaacgaagagaccaatgggtggaacacgaggattttattgcgtgcactcaggcccagcagattaaaatccaaaggctgagccctgatcaaagaca--aggcttgacttttatacactcttctgaaagggggttggctagtttgaatggcacagcgggaatttgatggcgcaaaactcgtagggcaggcaagagggcttacaaaagcagaacgaaggcagctaatcaaactgtgacaggtcttgcaacttaagcatagctggcgaccttgcagctgcactgaagggaaatcaggaacttaacgaaactggaataatgagaaatggtaagggggaaagagaaggtagtaaaggtatttgttgtttttttctcttatccttgct-ggggcagactgtgt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 124792987 413 - 227556264 TACtgttgcaggaatcaggagaacgaagagaccaatgggtggaacacgaggattttattgcgtgcactcaggcccagcagattaaaatccaaaggctgagccctgatcaaagaca--aggcttgacttttatacactcttctgaaagggggttggctagtttgaatggcacagcgggaatttgatggcgcaaaactcgtagggcaggcaagagggcttacaaaagcagaacgaaggcagctaatcaaactgtgacaggtcttgcaacttaagcatagctggcgaccttgcagctgcactgaagggaaatcaggaacttaacgaaactggaataatgagaaatggtaagggggaaagagaaggtagtaaaggtatttgttgtttttttctcttatccttgct-ggggcggactgtgt i macFas5.chr1 C 0 C 0 s chlSab2.chr20_KE148049v1_random 80940 403 + 1557941 taTtgttgcggaaatcaggagaccggagacgccaacgggtggaacaggaggatt---ttgagtgcactcaggcccagcagattaacatccaaagtttgagcctggaacaaagaca--gggcttgacttttatacactcttcc-caatggggttggctagtttgaatggcgccgcgg------gatggcgcgaaattcgcgggacaggcaagagggcttacagaagcagaaagaacgcagttaattcaactgtgacaggtcttgcgacacaagcatagctggtgaccttgcagctgcactgaaggaaaatcaggaactt-acacaacttgagtaatgagaagtggtaagggggaaagagaagctagtaaaggcgtttgttgttatttcttcttatccttgctaggggcggactgtgt i chlSab2.chr20_KE148049v1_random C 0 I 298 e calJac3.chr21 50438519 0 - 50472720 C e papAnu2.chr1 98619895 1770 - 220367699 I a score=16189.000000 s hg38.chr1_KI270765v1_alt 57547 17 + 185285 TGACAAAGTCGCTGGAA s panTro4.chr1_AACZ03149435_random 166513 17 + 173505 TGACAAAGTCGCTGGAA i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11242933 17 + 72422247 tgagagagtctctggaa i ponAbe2.chrUn C 0 I 243 s nomLeu3.chr12 56437324 17 - 109391073 TGACAAAGTCCCTGCAA i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128207585 17 + 229590362 tgagagagtatctggaa i rheMac3.chr1 C 0 C 0 s macFas5.chr1 124793400 17 - 227556264 tgagagagtatctggaa i macFas5.chr1 C 0 C 0 e calJac3.chr21 50438519 0 - 50472720 C e chlSab2.chr20_KE148049v1_random 81343 298 + 1557941 I e papAnu2.chr1 98619895 1770 - 220367699 I a score=50440.000000 s hg38.chr1_KI270765v1_alt 57564 140 + 185285 ATCACT-GTCAGAGATGTAGCTTTTAGGATAGTATT-GTCCAGGATCTGCTA-GGCTCTATCCACTGCAGGCCTTGGTG-------------GGGGGGGAGGGGGG-GCCTGCGAAGCACAGGAAAACTTGTCTTTTCGTTGTAACTTCC-GCTTCGT s panTro4.chr1_AACZ03149435_random 166530 154 + 173505 ATCACT-GTCAGAGATGTAGCTTTTCGGATAGTATT-GTCCAGGATCTGCTA-GGCTCTATCCACTGCAGGACTTCGTGTGTGTGTGTGGGCGGGGGGGAGAGGGGCGCCTGCCAAGTACAAGAAAACTTGTCTTTTCGTTGTAACTtcc-ccttcgt i panTro4.chr1_AACZ03149435_random C 0 C 0 s nomLeu3.chr12 56437341 128 - 109391073 GTCACT-GTCAGGGAGGTAGCTTTTCAGACAGCTTTAGTCAAGCACCTGCGA-GGCACTATCCACTGTATGCTCTGGGG----------------------------ATCTGCCAAGTACAAGAAAACTTCTCTTGTCATTGCAACTTTTAGCCTCAT i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128207602 127 + 229590362 ctcattcctcagggctctggcttttccgagagtgtc-atcaaggatctgctagggctctatctattgctggccttggag-----------------------------tctgttaagtgcaagaacacctgtctcttccttttAACTTCT-GAGTcat i rheMac3.chr1 C 0 C 0 s macFas5.chr1 124793417 126 - 227556264 ctcattcctcagggctctga-tgacttgagagtgtc-atcaaggatctgctagggctctatctattgctggccttggag-----------------------------tctgttaagtgcaagaacacctgtctcttccttttaacttct-gAGTcat i macFas5.chr1 C 0 C 0 e calJac3.chr21 50438519 0 - 50472720 C e chlSab2.chr20_KE148049v1_random 81343 298 + 1557941 I e ponAbe2.chrUn 11242950 243 + 72422247 I e papAnu2.chr1 98619895 1770 - 220367699 I a score=46799.000000 s hg38.chr1_KI270765v1_alt 57704 47 + 185285 TACTACAAGTTACGCAGCTGAGCTTCCCACGTTAGAGAAAATGACAG s panTro4.chr1_AACZ03149435_random 166684 47 + 173505 tactacaaattacgtagctgagtttcccacgttagaggaaatgacag i panTro4.chr1_AACZ03149435_random C 0 C 0 s nomLeu3.chr12 56437469 47 - 109391073 TACTACAAATTAAGCAACTAAACTCCCCACGTCGGGCAAAATAACAG i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128207729 47 + 229590362 tactacaagttatgcagcggagcttcccacattaggggaaataacag i rheMac3.chr1 C 0 I 69 s macFas5.chr1 124793543 47 - 227556264 tactataagttatgcagcggagcttcccacattaggggaaataacag i macFas5.chr1 C 0 I 2 s calJac3.chr21 50438519 47 - 50472720 taccacaaattatgcagtcgagtttcccacatttggggaaatcgcag i calJac3.chr21 C 0 C 0 e chlSab2.chr20_KE148049v1_random 81343 298 + 1557941 I e ponAbe2.chrUn 11242950 243 + 72422247 I e papAnu2.chr1 98619895 1770 - 220367699 I a score=4932.000000 s hg38.chr1_KI270765v1_alt 57751 20 + 185285 --AACAGCACACTTGAAATGAA s panTro4.chr1_AACZ03149435_random 166731 20 + 173505 --aacagcatacttggaatgaa i panTro4.chr1_AACZ03149435_random C 0 C 0 s nomLeu3.chr12 56437516 15 - 109391073 --AAC-----ACTTCGGATAGA i nomLeu3.chr12 C 0 I 98 s macFas5.chr1 124793592 20 - 227556264 --aacagcgtatcaggagtgca i macFas5.chr1 I 2 C 0 s calJac3.chr21 50438566 22 - 50472720 gggtcagcacatccggagtgca i calJac3.chr21 C 0 C 0 e chlSab2.chr20_KE148049v1_random 81343 298 + 1557941 I e rheMac3.chr1 128207776 69 + 229590362 I e ponAbe2.chrUn 11242950 243 + 72422247 I e papAnu2.chr1 98619895 1770 - 220367699 I a score=7394.000000 s hg38.chr1_KI270765v1_alt 57771 40 + 185285 ATAGTTGAG--TCGGGTTTAA---AAGCCATTTCAGTAACCACAA s panTro4.chr1_AACZ03149435_random 166751 40 + 173505 acagttgag--tcgggtttag---aagccacttcaataaccataa i panTro4.chr1_AACZ03149435_random C 0 C 0 s macFas5.chr1 124793612 45 - 227556264 acggatgagcctcagctttaggatgaaccactttggtgaccataa i macFas5.chr1 C 0 I 2 s calJac3.chr21 50438588 43 - 50472720 atggataagcctcgccctggga--aaaccaccttcgtgatcatgg i calJac3.chr21 C 0 C 0 e chlSab2.chr20_KE148049v1_random 81343 298 + 1557941 I e rheMac3.chr1 128207776 69 + 229590362 I e ponAbe2.chrUn 11242950 243 + 72422247 I e papAnu2.chr1 98619895 1770 - 220367699 I e nomLeu3.chr12 56437531 98 - 109391073 I a score=17037.000000 s hg38.chr1_KI270765v1_alt 57811 35 + 185285 TATCTGCCCTGCCACATAAATAAGATTGCACCTAT s panTro4.chr1_AACZ03149435_random 166791 35 + 173505 tatctgccctgccacataagtaAGATTCCACGTAT i panTro4.chr1_AACZ03149435_random C 0 C 0 s rheMac3.chr1 128207845 35 + 229590362 catttgccctgccaagtaagtgtGAGTGCCTGAAC i rheMac3.chr1 I 69 C 0 s macFas5.chr1 124793659 35 - 227556264 catttgccctgccaagtaagtgtGAGTGCCTGAAC i macFas5.chr1 I 2 C 0 s calJac3.chr21 50438631 35 - 50472720 tatctcccctgccaggtaagtatGAATTCCTACGC i calJac3.chr21 C 0 C 0 e chlSab2.chr20_KE148049v1_random 81343 298 + 1557941 I e ponAbe2.chrUn 11242950 243 + 72422247 I e papAnu2.chr1 98619895 1770 - 220367699 I e nomLeu3.chr12 56437531 98 - 109391073 I a score=7659.000000 s hg38.chr1_KI270765v1_alt 57846 6 + 185285 CTCCGC s panTro4.chr1_AACZ03149435_random 166826 6 + 173505 CTCCGC i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11243193 6 + 72422247 CTCTGC i ponAbe2.chrUn I 243 C 0 s rheMac3.chr1 128207880 6 + 229590362 CTCTGC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 124793694 6 - 227556264 CTCTGC i macFas5.chr1 C 0 C 0 s calJac3.chr21 50438666 6 - 50472720 CTCCGC i calJac3.chr21 C 0 C 0 e chlSab2.chr20_KE148049v1_random 81343 298 + 1557941 I e papAnu2.chr1 98619895 1770 - 220367699 I e nomLeu3.chr12 56437531 98 - 109391073 I a score=21317.000000 s hg38.chr1_KI270765v1_alt 57852 12 + 185285 CCCGCCACAGCT s panTro4.chr1_AACZ03149435_random 166832 12 + 173505 CCCGCCACAGCT i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11243199 12 + 72422247 CCCACCACAGCT i ponAbe2.chrUn C 0 C 0 s rheMac3.chr1 128207886 12 + 229590362 CCTGCCACAGCT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 124793700 12 - 227556264 CCTGCCACAGCT i macFas5.chr1 C 0 C 0 s chlSab2.chr20_KE148049v1_random 81641 12 + 1557941 CCCGCCACAGCC i chlSab2.chr20_KE148049v1_random I 298 C 0 s calJac3.chr21 50438672 12 - 50472720 CCCGCCACAGCC i calJac3.chr21 C 0 C 0 e papAnu2.chr1 98619895 1770 - 220367699 I e nomLeu3.chr12 56437531 98 - 109391073 I a score=449030.000000 s hg38.chr1_KI270765v1_alt 57864 232 + 185285 CCATACGCCTCACCC-TTTAAACGCACAGTCACTTGCCCC-AGCA---------CCACTCCAGCCA-ATCCCCAACCACCCCGAGCCCTCCTAGCCCTAACACACAGCTGGGACTCTCATGTCCAGCCAGTGGTCCTGGACTTGCTCCTACAGCGCGGGAAATCCTTCGTGGCGAAGCAGCAGCCCCTGCGCTGCCTCATCTACATAGAAA-CGCCCTATCGGTGATGTCACCGACAGTGCCTTT s panTro4.chr1_AACZ03149435_random 166844 232 + 173505 CCATACGCCTCACCC-TTTAAACGCACAGTCACTTGCCCC-AGCA---------CCACTCCAGCCA-ATCCCCAACCACCCCGAGCCCTCCTAGCCCTAACACACAGCTGGGACTCTCATGTCCAGCCAGTGGTCCTGGACTTGCTCCTACAGCGCGGGAAATCCTTCGTGGTGAAGCAGCAGCCCCTGCGCTGCCTCATCTACATAGAAA-TGCCCTATCGGTGATGTCACCGACAGTGCCTTT i panTro4.chr1_AACZ03149435_random C 0 C 0 s ponAbe2.chrUn 11243211 231 + 72422247 CCATATGCCTCACCC-TTTACACACACGGTCACTTGCCCTGAGAA---------CCACTCCCACCA-ATCCCCAACCACCCCTAGCCCTCCTAGCCCTAACACACAGCTGGGACTCTCACATCCAGCCAGCAGTCCTGGACTTGCTCCAACAGCACGGGAAATCCTCCATGGC-AAACAGCAG-CCCTGTGCTGCCTCATCTACAGAGAAA-TGCCCTATCGGTGATGTCACCAACAGTGCCTTT i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56437629 232 - 109391073 TTATGCGCCTCACCC-TTTAAACTCAGAGTCACTTGCCCCGAGCA---------CCACTCCAGCCA-ATCCCCAACCACCCCGAGCCCTCCTATCCCTAACACACAGCTGGGACTCTCATGTCCAGCCAGTGGTCCTGGACTTGCT-CTATAGCGCAGGAAATCCTTCGTGGCGAACCAGCAGCCCCTGCGCTGCCTCATCAACATAGAAA-CGCCCTATCGGTGATGTCACCGACAGTGCCTTT i nomLeu3.chr12 I 98 C 0 s rheMac3.chr1 128207898 223 + 229590362 CCATATGCCTCACCC-TTTACACACACAGTCACTTGCCCCAAGCA---------CTGCATCATCCA-ATCCCCAA----------CCCTCCTAGCCCTAACACACAGCAAGGACCCTCACGTCCAACCAGCGGTCCTGGACTTGCTCCTACAGCATGGGAAATCCTTCCTGGGGGAGCAGCAGCCCCTGCGCTGCCTCATCTACATAGAAA-CACCCTACCGGTTATGTCACCGACAGTGCCTTT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 124793712 223 - 227556264 CCATATGCCTCACCC-TTTACACACACAGTCACTTGCCCCAAGCA---------CTGCACCATCCA-ATCCCCAA----------CCCTCCTAGCCCTAACACACAGCAAGGACCCTCACGTCCAACCAGTGGTCCTGGACTTGCTCCTACAGCATGGGAAATCCTTCCTGGGGGAGCAGCAGCCCCTGCACTGCCTCATCTACATAGAAA-CACCCTACCGGTTATGTCACCGACAGTGCCGTT i macFas5.chr1 C 0 C 0 s chlSab2.chr20_KE148049v1_random 81653 233 + 1557941 CCATACGCCTTACCCTTTTACACGCACGGTCACTCGCCCCGAGAG---------CCACCCCCGCCA-ATCCCCAACCACTCCGAGCCCTCCTAGCCCTAACACACAGCTGGCACTCTCACGTCCAGCCAGCGGTCCTGGACTTGCTCCTACAGCACTGGAAATCCTCCGTGGCGAAGCAGCAA-CCCTGAGCTGCCTCATCTACATAGGAA-CGCCCTATCGGTGATGTCACCAACAGTGCCTTT i chlSab2.chr20_KE148049v1_random C 0 C 0 s calJac3.chr21 50438684 243 - 50472720 TCATACGCCTCACCC-TTTACATTCACGGTCACTTGCCCGGGACATTTCCTCCCCCCCTCCCCCCGCACCCCCAGCCACCCCGAGCCCTCCTAGTCCGGACACACAGCTGGGATTCTCAGATCCAA-CACCGGTCCTGGACTTGCTCCCACAGCACCAGAAATCCCTCATGGCGAAGCAGCAGCCCCTGCGCTGCCTCATCTACATAGAAGTCACCCTGTGTGTGACGTCACTGACAGTGTCTTT i calJac3.chr21 C 0 C 0 e papAnu2.chr1 98619895 1770 - 220367699 I a score=902696.000000 s hg38.chr1_KI270765v1_alt 58096 602 + 185285 CCCAGTCTCCTTCTGCTCTTCCGCCCCACCCTCCGCCACTCAGCCTACCAACCCGCTGGGGGAGCCGACGGAGGAAGTGACGTCTG-CTGTCCCACCTCTCCCTCCCGCCCTTGTCCTTTCCGGAGGTGCGCCCAGACCCCGCATCTAGTATCCCCCAAAGAAGCGACTActtaacttgtgtcctgcggaggacccttctggcggccagctggaag-ctgtgcgccggtcttcaaatagtggcttttaattcgcagactagaacatttaggattacaaagaaaaccGTTTCCTTTCAAAGCTGTTTATCTTTGTGAAGTAGCATTTTGCTTAAAATTGGAAGCCTTTGACTATCAGAGAGAAATCATATCTATGAAACTAGAGAGGCTGCTCAGATGACTGCAAACCAGCCATCCTTGCTGGTTTTACCAGTAGTAGTGTTATAAAGAATGTTGTCCAATTTCATGAGTCTCGTAGGTTTGT-TTTTTTGT----------TTTTCaaatacagtattgtacaaaaaggaagcagaatgtggttgctgtcacaatgtaatgcctctctgggcctgagaatttggaaaggctcacactcctcat----aaaagttctctt s panTro4.chr1_AACZ03149435_random 167076 602 + 173505 CCCAGTCTCCTTCTGCTCTTCCGCCCCACCCCCCGCCACTCAGCCTACCAACCCGCTGGGGGAGCCGACGGAGGAAGTGACGTCTG-CTGTCCCACCTCTCCCTCCCGCCCTTGTCCTTTCCGGAGGTGCGCCCAGACCCCGCATCTAGTATCCCCCAAAGAAGCGACTActtaacctgtgtcctgcggaggacccttctggcggccagctggaag-ctgtgcgccggtcttcaaatagtggcttttaattcgcagactagaacgtttaggattacaaagaaaaccGTTTCCTTTCAAAGCTGTTTATCTTTGTGAAGTAGCATTTTGCTTAAAATTGGAAGCCTTTGACTATCAGAGAGAAATCATATCTATGAAACTAGAGAGGCTGCTCAGATGACTGCAAACCAGCCATCCTTGCTGGTTTTACCAGTAGTAGTGTTATAAAGAATGTTGTCCAATTTCATGAGTCTCGTAGGTTTGT-TTTTTTGT----------TTTTCaaatacggtattgtacaaaaaggaagcagaatgtggtcgctgtctcaatgtaatgcctctctgggcctgagaatttggaaagtctcgcactcctcat----aaaagttctctt i panTro4.chr1_AACZ03149435_random C 0 C 0 s nomLeu3.chr12 56437861 580 - 109391073 CCCAGTCTCCTTCTGCTCTTCCACTCCACCCTCCGCCACTCAGCCGACCAACCCGCTGCGGG------CGGAGGTAGTGACGTCTG-CTGTCCCGCCTCTCCCTCCCGCCTTTGTCCTTTCCGGAGGTGCGCCGAGACTCCGCATCTAGTATCCCCCAAAGAAGCGACTACTTAACCTGTGGCCTGCGGAGGACCCTTCTGGCGGCCAACTGGAAG-CCGTGCGCCGGTCTTCAG--AGTGGCTTTTAATTCGAAGACTAGAACGTTTAGGATTACAAAGAAAACCGTTTCCTTTCAAAGCTGTTTATCTTTGTGAAGTAGCATTTTGCTTAAAATTGGAAGCCTTTCAGTATCAGAGAGAAATCATATCTATGAAACTAGAGAGGCTGCTCAGATGATTGCAAACCAGCCATCCTTGCTGGTTTTACCAGTAGTAGTGTTATGAAGAAAATTGTCCAATTTCATGAGTC---------------TTTTGT----------TTTTCaaatacagtagtgtacaaaaaggaagcagaatgtggttgctgtctcaatgtaatgcctctctgggcctcagaatttggaaaggctcgcactcgtcat----aaaagttctctt i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128208121 603 + 229590362 CCCAGTCCCCTTCTGCTCTTCCGCCCCACCCTCCTCCACTCAGCCCACCAACACACTGCCGAAACCGGCAGGGGAAGTGACGTCTGCCTGTCCCTCCTTTCCTTCCCGC-CTTGTCCTTTGGGGAGGTGTGCCTAGACCCCGCATCTAGTCTCCCCCAAAGAAGCGACTActtaacctgtgtcctgcagaggacacccctggtggtcagctggaagcctgtgcgcccgtcttcaaataatggcttttaattttcagactagaacgtttaggattacaaagaaaatcagttcctttccaacctagttatcTTTGTGAAGTAGCATTCCACTTAAAATTGGAAGCCCTTCAGTAACAGAGAGAAATCGTATCTATGAAACTAGAGAGGCTGCTCAGATGACTGCAAACCAGTCATCCTTATTGGTTTTACCAATAGTAGTGTTATAAAGAAAGTTGTTCAGTTTTATGAGTCTTGTAGGTTTGC-TTTGTTGT----------TTTTCAGTTACAGTATTGTACAAAAAggaagcagaatgtggttgctgtctcaatgtaatgcctctctgggcctgagaatttgaaaaggctcacactcctcat----aaaagttctctt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 124793935 603 - 227556264 CCCAGTCCCC-TCTGCTCTTCCGCCCCACCCTCCTCCACTCAGCCCACCAACACACTGCCGAAACCGGCAGGGGAAGTGACGTCTGCCTGTCCCTCCTTTCTCTCCCGCTCTTGTCCTTTGGGGAGGTGTGCCTAGACCCCGCATCTAGTCTCCCCCAAAGAAGCGACTActtaacctatgtcctgcagaggacacccctggtggtcagctggaagcctgtgcgcccgtcttcaaataatggcttttaatttgcagactagaacgtttaggattacaaagaaaatcagttcctttccaacctagttatcTTTGTGAAGTAGCATTCCACTTAAAATTGGAAGCCCTTCAGTAACAGAGAGAAATCGTATCTATGAAACTAGAGAGGCTGCTCAGATGACTGCAAACCAGTCATCCTTATTGGTTTTACCAATAGTAGTGTTATAAAGAAAGTTGTTCAGTTTTATGAGTCTTGTAGGTTTGC-TTTGTTGT----------TTTTCAGTTACAGTATTGTACAAAAAggaagcagaatgtggttgctgtctcaatgtaatgcctctctgggcctgagaatttgaaaaggctcacactcctcat----aaaagttctctt i macFas5.chr1 C 0 C 0 s chlSab2.chr20_KE148049v1_random 81886 603 + 1557941 CCCAGTCCCCTTCTGCTCTTCGGCCCCACCCTCCGCCACTCAGCCGACCAACCCCCCGCTGGAGCCGGCGAGGGAAGTGACGTCTGCCTGTCCCTCCTTTCCCTCCCGC-CTTGTCCTTTGCGGAGGTGCGCCGAGACCCCGCATCTAGTCTCTCCCAAAGAagggactacttaacctgtgtcctgcggaggacccttctggaggacagctggaagcctgtgcgcccgtcttcaaaaaatggctttcaattcgcagactagaacgtttaggattacaaggaaaacctgttcctttcaaacctggttatcTTTGTGAAGTAGCATTCCACTTAAAATTGGAAGCCCTTCAATATCAGGGAGAAATCATATCTATGAAACTAGAGAGGCTGCTCAGATGACTGGAAACCAACCATCCTTATTGGTTTTACCAGTAGTAGTGTTTTAAAGAAAGTTGTCCAATTTCATGAATCTTGTCGTTTTGG-TTTTTTGT----------TTTTCaaatacagtattgtacaaaaaggaagcggaatgtggttgctgtctcaatgtaatgcctctctgggcctgagaatttgaaaaggctcacacttctcat----aaaagttctctt i chlSab2.chr20_KE148049v1_random C 0 I 325 s calJac3.chr21 50438927 581 - 50472720 CCCAGTGGCGGGCCGCTCT---------------GCCACTCAGCCCACCAATCCGCTGCCTGAGGCGGTGGGGGAAGTGAC-TCTGCCTCTCCCTTCTTTCCCTCCCTCCCTTGTCCTCTGGGGAGGTGCGCCAAGATCCCGCAACTGGTCTCCCTCAAAGAACCGATTGCTTAACCTGTGTCCCG-------------TGGCGGCCAGCTGgaagcctgtgcctccgtctccagataatggcttttaattcgcaaactagaatgtttaggattaca--gaaaaccggttCCTTGCTAACATGGTTATCTTTGTGAAGTAGCATTGCGCTTAAAATCGGAAGTCCTTCAATATCAGAAACAAA---TAGCTATGAAACCAGAGAGGCTGCTCAGATGACTGCACACAAGCCATCC----TGATTTTACCAGTGGTAATGTCATAAAGACAATTGGCCAATTACTTGAATCTTGTAGGTTGGGATTTTTTGTTTTTGTTTCGTTTTCAAATACAGTATTGTACAGAAAgaaagcagagcatggtttctgtctcagtgtaatgactctctgggcctgagaatttgaaaaggctcaggttcctcatataaaaaagttctctt i calJac3.chr21 C 0 C 0 e ponAbe2.chrUn 11243442 0 + 72422247 C e papAnu2.chr1 98619895 1770 - 220367699 I a score=22349.000000 s hg38.chr1_KI270765v1_alt 58698 19 + 185285 ctttcctcaTTCTCCCTTT s panTro4.chr1_AACZ03149435_random 167678 19 + 173505 cttttctcaTTCTCCCTTT i panTro4.chr1_AACZ03149435_random C 0 C 0 s nomLeu3.chr12 56438441 19 - 109391073 ctttcctcaTTCTCCCTTT i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128208724 19 + 229590362 cttTCCGCATTCTCCCTTT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 124794538 19 - 227556264 cttTCCGCATTCTCCCTTT i macFas5.chr1 C 0 C 0 s calJac3.chr21 50439508 19 - 50472720 ctttcctcaTTCTCTTTTA i calJac3.chr21 C 0 C 0 e chlSab2.chr20_KE148049v1_random 82489 325 + 1557941 I e ponAbe2.chrUn 11243442 0 + 72422247 C e papAnu2.chr1 98619895 1770 - 220367699 I a score=4152.000000 s hg38.chr1_KI270765v1_alt 58717 5 + 185285 AGATA s panTro4.chr1_AACZ03149435_random 167697 5 + 173505 AGATA i panTro4.chr1_AACZ03149435_random C 0 C 0 s nomLeu3.chr12 56438460 5 - 109391073 AGATA i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128208743 5 + 229590362 AGATA i rheMac3.chr1 C 0 C 0 s calJac3.chr21 50439527 5 - 50472720 AGATG i calJac3.chr21 C 0 C 0 e chlSab2.chr20_KE148049v1_random 82489 325 + 1557941 I e ponAbe2.chrUn 11243442 0 + 72422247 C e papAnu2.chr1 98619895 1770 - 220367699 I e macFas5.chr1 124794557 0 - 227556264 C a score=1442.000000 s hg38.chr1_KI270765v1_alt 58722 9 + 185285 AAAAGTCtt s panTro4.chr1_AACZ03149435_random 167702 8 + 173505 AAATGTC-t i panTro4.chr1_AACZ03149435_random C 0 C 0 s nomLeu3.chr12 56438465 7 - 109391073 AAAAGTC-- i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128208748 9 + 229590362 AAAAGTCTT i rheMac3.chr1 C 0 N 0 e calJac3.chr21 50439532 0 - 50472720 C e chlSab2.chr20_KE148049v1_random 82489 325 + 1557941 I e ponAbe2.chrUn 11243442 0 + 72422247 C e papAnu2.chr1 98619895 1770 - 220367699 I e macFas5.chr1 124794557 0 - 227556264 C a score=73621.000000 s hg38.chr1_KI270765v1_alt 58731 284 + 185285 ttttttttttttttttttttttgagacggagtctcgctctgtc-------------------ggcgggatctcggctcactgcaagctccgcctcccgggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggcgcccgccacgacgcccggctaattttttgtatttttagtagaggcggggtttcactgtgttagccaggatggtctcgatctcctgacctcatgatccgcccgcctctgcctcccaaagtgctgggattacaggcgtgagccaccgcgcccggcc s panTro4.chr1_AACZ03149435_random 167710 284 + 173505 ttttttttttttttttttttttgagacggagtctcgctctgtc-------------------ggcgggatctcggctcactgcaagctccgcctcccgggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggcgcccgccaccacgcctggctaattttttgtatttttagtagaggcggggtttcactgtgttagccaggatggtctcgatctcctgacctcatgatccgcccgcctctgcctcccaaagtgctgggattacaggcgtgagccaccgcgcccggcc i panTro4.chr1_AACZ03149435_random C 0 C 0 s nomLeu3.chr12 56438472 295 - 109391073 --------ttttttttttttttgagacggagtctcgctctgtcgcccagactggagtgcagtggcgcaatctcggctcactgcaagctccgcctcccgggttcaagccattctcctgcctcagcctcccgagtacctgggactacaggcgcccaccaccacgcccggctaattttttgtatttttagtagagacgggctttcactgtgttggccaggatggtctcgatctcctgacctcgtgatccgcccgcctcggcctcccaaagtgctgggattacaggcgtgagccaccgcgctcggcc i nomLeu3.chr12 C 0 C 0 e calJac3.chr21 50439532 0 - 50472720 C e chlSab2.chr20_KE148049v1_random 82489 325 + 1557941 I e ponAbe2.chrUn 11243442 0 + 72422247 C e papAnu2.chr1 98619895 1770 - 220367699 I e macFas5.chr1 124794557 0 - 227556264 C a score=5550.000000 s hg38.chr1_KI270765v1_alt 59015 6 + 185285 AGATAA s panTro4.chr1_AACZ03149435_random 167994 6 + 173505 AGATAA i panTro4.chr1_AACZ03149435_random C 0 C 0 s nomLeu3.chr12 56438767 6 - 109391073 AGATAA i nomLeu3.chr12 C 0 C 0 s macFas5.chr1 124794557 6 - 227556264 AGATAA i macFas5.chr1 C 0 C 0 s chlSab2.chr20_KE148049v1_random 82814 6 + 1557941 AGATAA i chlSab2.chr20_KE148049v1_random I 325 C 0 e calJac3.chr21 50439532 0 - 50472720 C e ponAbe2.chrUn 11243442 0 + 72422247 C e papAnu2.chr1 98619895 1770 - 220367699 I a score=512649.000000 s hg38.chr1_KI270765v1_alt 59021 456 + 185285 AAAGTCTTTCTTGAAAGCATTGTtgatcaaaagct--------gtatctctccttgccagaaaggctcattcccagatagtcctgtcccacactgggggcaggggaggaaaggagccctctcactaaggaatttttaacagtgcccagaagctg------aat-----tggcatcacagaattgg----gggcggggggggagacagaga------------gatctcggccaattctatagttgctgtcacttgttgaatcatctctagtcttcagagtaccatg----------------------aaaacaatgagaaatacataacattaataatttgactagtggagatataatgcacacaagaatgataatcacaaagagaatctatatcccgaaacagtaagggaacctattccattaggcagccaactgaaaacatcaggg-aaaacatcaaataccatttcttctttagtgatttattgtagccaagtggcttcctttctaa-ttt s panTro4.chr1_AACZ03149435_random 168000 478 + 173505 AAAGTCTTTCTTGAAAGCATTGTCGATCAAAAGCT--------GTATCTCTCCttgccagaaaggctcattcccagatagtcctgtcccacactgggggcaggggaggaaaggagccctctcactaaggaatttttaacagtgcccagaagctg------aat-----tggcatcacagaattgg----ggg-gggaggggagacagaga------------gatctcggccaattctatagttgctgtcacttgttgaatcatctctagtcttcagagtaccatgaatttcgtttctcaaaagaagtaaaacaatgagaaatacataacattaataatttgactagtggagatataatgcacacaagaatgataatcacaaagagaatctatatcccgaaacagtaagggaacctattccattaggcagccaactgaaaacatcaggg-aaaacatcaaataccatttcttctttagtgatttcttgtagccaagTGGCTTCTTTTCTAATTTT i panTro4.chr1_AACZ03149435_random C 0 C 0 s nomLeu3.chr12 56438773 474 - 109391073 AAAGTCTTTCTTGAGAGCATTGTCCATCAAAAGCT--------GTATCCCTCCttgccagaaagcctcattcccagacagtcctgtcccacactgggggcaggtgaggaaaggagccctctcactgaggaatttttaacagtgcccagaagctg------aat-----tggcatcacggaa-tgg----gga-aaaaaaaaagacagaga------------gatctcggccaattctatatttgctgtcacttgttgaatcatctctagtcttcagagtaccatgaatttagtttctcaaaagaagtaaatcaatgagaaatacataacattaataatttgactagtggagatataatgcacacaagaatgctaatcacaaagagaatctatatcctgaaacagtaagggaacctattccattaggcagccaattgaaaacatcaggg-aaaacatcaaatcccatttcttctttagcgatttcttgtagccaagTGGCTTCTTTTCTGA---C i nomLeu3.chr12 C 0 C 0 s macFas5.chr1 124794563 502 - 227556264 AAAGTCTTCCTTGAAAGCCTTGTCGAtcaaaagtt--------gtgtccctccttgccagaaaggctcattcccagatagtcctgtcccacatt-ggggcaggggaggaaaggagccctctcactaaggaattttTAACGGTGCCCAAAAGCTGCCCAAAAGCTGGTGTGGCATCACAGAA-TGGGGGCGGG-GGGAagagagacagagagagagaAGGGGTGATCTCGGCCAATCCTatagttgctgtcacttgctgaatcatctctagtcttcaaagtacaatgaatttactttctcaaaagaagtaaaacaatgagaaatacaaaacattaataatttgagtagtagaaatacaatgcacagaggaatgatagtcacaaagagaacctgtatcctggaacagtaggggaacctatttcattaggcagccaactgaaaatatcaggg-aaaacatcaaatcccatttcttctttagtgatttcttgtagccaagTGGTTTCTTTTCTGA-TTT i macFas5.chr1 C 0 C 0 s chlSab2.chr20_KE148049v1_random 82820 490 + 1557941 AAAGGTTTTCTTGAAAGCATTATCGATCAAAAGTT--------GTGTCTCTCCttgccagaaaggcttattcccagacggtcctgtcccacactgggggcaggggaggaaaagagccctcttactgaggaatttttaacggtgcccaaaagctg------aattggtgtggcatcacagaa-tg-----gag-agagagagagagagacagagagaaggaacgatctcggccaattcgatagttgctgtcacttgttgaatcatctctagtcttcagagtaccatgaattcagtttcttaaaagaagtaaaacaatgagaaatacataacat---tgatttgagtagtagaaatataatgcacacaagaatgataatcacaaagagaatctgtatcctggaacagtaaggaaaactattccattaggcagccaactgaaaacatcagggaaaaacatcaaatcccatttcttctttaatgatttcttgtagccaagtggcttcttttctga-ttt i chlSab2.chr20_KE148049v1_random C 0 C 0 s calJac3.chr21 50439532 497 - 50472720 AAAGTTTTTCTTGAAAGCGTTGATGGTCAAAAGCTGGGCCAAGGTGTTTCTCCttgccagaaagactcattcccagttagtcctgtcccacacggggagctggggaggaaaggagtcctctcactgatgaagttttaacagctcccaatagctg------aattggtgtggcatcacagaa-cg-----gga-aaaaaaaaaaaaagagagagagagaga--gatcacggtcaattccacagttgctgtcagttgttgaatcttctctagtcttcagagtaccatgaatttagtttcccagaagaagtaaga-agtgagaaatacatagcattaacaatttgagttgtagaaatataatgtacacaagactgataatcacaaagagaatctgtgtgctagaacagtaagggaacctgctccattaggcagccagctgaaaacagcaggg-aaaacatgaaatcccagttcttcttcagtgatttctcatagccaagtggcttcttttatga-ttt i calJac3.chr21 C 0 C 0 e ponAbe2.chrUn 11243442 0 + 72422247 C e papAnu2.chr1 98619895 1770 - 220367699 I a score=253849.000000 s hg38.chr1_KI270765v1_alt 59477 150 + 185285 tttttctagagaaggttctactgcatgggaaacatttatgtatatgcaacaaaaggtatttgccaccacacatacat-ctccctgctcagctaaatatatcatctaaagtgatgtgattacctagtacaaccttagccagtgaataaatag s panTro4.chr1_AACZ03149435_random 168478 150 + 173505 TTTTTCTAGAGAAGGTTCTACTGCATGggaaacatttatgtatatgcaacaaaaggtatttgccaccacacatacat-ctccctgctcagctaaatatatcatctaaagtgatgtgattacctagtacaaccttagccagtgaatAAATAG i panTro4.chr1_AACZ03149435_random C 0 C 0 s nomLeu3.chr12 56439247 150 - 109391073 TTTTGCTAGAGAAGGTTCTACTGCATGGGAAACATTTATGTATATGCAACAAAAGGTGTTTGCCACCACACATACAT-CTCCCTGCTCAGCTAAATATGTCATCTAAAGTGATGTGATTATCTAGTATAACCTTAGCCAGCGAATAAATAG i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128366332 150 + 229590362 TTTTTATAGAGAAGGTTCTACTGCATGGGGAATatttatatatatgcaacaaaaggtatttgccaccacacatacat-ctccctgctcagctaaatatatcatctaaagtcatatgattgtctagtacaaccttagccagtgaataaatag i rheMac3.chr1 N 0 N 0 s macFas5.chr1 124795065 149 - 227556264 --CTTCTAGAGAAGGTTCTACGGCATGGGAAATATTTATGTATACGCAACAAAAGATATTTGCCACCACACATACATCCTCCCTGCTCAGCTAAATATATCATCTAAAGTGATGTGATTATCTACTACAACCTTAGCCAGTGAATAAATAG i macFas5.chr1 C 0 C 0 s chlSab2.chr20_KE148049v1_random 83310 148 + 1557941 --cttctagagaaggttctacggcatgggaaatatttatgtgtatataacaaaaagtatttgccaccacacatacat-ctccctgctcagctaaatatatcatctaaaatgatgtgattatctactacaaccttagccaatgaataaatag i chlSab2.chr20_KE148049v1_random C 0 N 0 s calJac3.chr21 50440029 148 - 50472720 -ttttcaagagaaagttctacttcatgggaaatatttatgtatatgcaacaggaggtatttgccaccacacatacat-ctccctgctcagctaaatatatca-ctaaagcgatatgattatctggtacaaacttagccagtgaataaataa i calJac3.chr21 C 0 C 0 e ponAbe2.chrUn 11243442 0 + 72422247 C e papAnu2.chr1 98619895 1770 - 220367699 I a score=133522.000000 s hg38.chr1_KI270765v1_alt 59627 179 + 185285 ctttttattgagCTGCAAAAGAGGCCGCAGTTTCATCAGCAATGTTTTTCtttcttttttctttttctttcagagacagcgtctgtctctgtg---tcccaggctggagtgcagtggtgccatcatagctcactgcagccttcaactcctgggcttaagtgatcctcctgcctcagcccccg s panTro4.chr1_AACZ03149435_random 168628 179 + 173505 CTTTTTATTGAGCTGCAAAAGAGGCCGCAGTTTCGTCAGCAATGTTTTTCTTTCAtttttctttttctttcagagacagcgtctgtctctgtg---gcccaggctggagtgcagtggtgccatcatagctcactgcagcctccaactcctgggcttaagtgatcctcctgcctcagcccccg i panTro4.chr1_AACZ03149435_random C 0 C 0 s nomLeu3.chr12 56439397 179 - 109391073 CTTTTTATTGAGCTGCAAAAGAGGCCGCAGTTTTGTCAGCAACGTTGTTCtttcttttttctttttctttcagagacagtgtctgtctctgtg---gccaaggctggagtgcagtggcgccatcatagctcactgcagcctccaactcctgggcttaagtgatcctcctgcctcagcccccg i nomLeu3.chr12 C 0 C 0 s macFas5.chr1 124795214 177 - 227556264 -CTTTTGTTGAGCTGCAAAAGAGGCCGCAGTTTCATCAGCAATGTTTTTCTttc-tttttctttttctttcagagacagtgtctggctttgtg---gcccaggctacagtgcagtggtgccatcatagctcactgcagcctcgaattcctgggcttaagagatcctcccgcctcagccgcca i macFas5.chr1 C 0 C 0 s calJac3.chr21 50440177 172 - 50472720 ctttttgttaagctgcaaaagaggctgcagttctatcagcaaTATttttctttc-------tttttctttcagagacaggatctggctctgagacagcccaggctggagtgcagtggcaccatcatagctcactgcagcctcaaactcctggggttggga---tctcccatctcagcccctg i calJac3.chr21 C 0 C 0 e ponAbe2.chrUn 11243442 0 + 72422247 C e papAnu2.chr1 98619895 1770 - 220367699 I a score=274692.000000 s hg38.chr1_KI270765v1_alt 59806 223 + 185285 agtcactgggattacaggccagagccaccatgcctggTTTTCATCAGCAGTGTTTCCTGAGGTTACAGAAAGATTTATAATCCTAGGAAGAAACACTCCCTTGAAGCAAAAGTGCTCTCCCCGCAAAAATGCAAGGAGCTATCTTCTTGATAGCCGGGCAGATAATTCTCAGGTTTTGCCCC-ACTGAATCTCTATCTAAAATAGAGCAGTGGTCATGCCTAGT s panTro4.chr1_AACZ03149435_random 168807 223 + 173505 agtcactgggattacaggccagagccaccatgcctggTTTTCATCAGCAGTGTTTCCTGAGGTTACAGAAAGATTTGTAATCCTGGGAAGAAACACTCCCTTGAAGCAAAAGTGCTCTCCCCCCAAAAATGCAAGGAGCTATCTTCTTGATAGCCGGGCAGATAATTCTCAGGTTTTGCCCC-ACTGAATCTCTATCTAAAATAGAGCAGTGGTCATGCCTAGT i panTro4.chr1_AACZ03149435_random C 0 C 0 s nomLeu3.chr12 56439576 223 - 109391073 agtcactgggattacaggccagagccaccatgcctggTTTTCATCAGCAGTGTTTCCTGAGGTTACAGAAAGATTTGTAATCCTGGGAAGAAACACTCCCTTGAAGCAAAAGTGTTCTCCCCCAAAAGATGAAAGGAGCTATCTTCTTGATAGCCGGGCAGATAATTCTCAGGTTTCGCCCC-ACTGAATCTCTATCTAAAATAGAGCAGTGGTCATACCTAGT i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128209569 223 + 229590362 AGTCACTGAGATTACAGGCCAGAGCCAGCATGCCTGGTTTTCATCAGCAGTGTTTCCTGTGGCTACAGAAAGATTTGTAATCCTGGGAGGAAATGCTCCCTTGAAGCAAAAGTGTTCTCCCCCAAAAAATGCAAGGAGCTATCTTCTTGATAGCCAGGCAGATAATTCTCAGGTTTTGCCCC-ACAGAATCTCTATCTAAAATAGAGAAGTGGTCATGCCTAGT i rheMac3.chr1 N 0 C 0 s macFas5.chr1 124795391 223 - 227556264 agtcactgagattacaggccagagccagcatgcctggTTTTCATCAGCAGTGTTTCCTGTGGCTACAGAAAGATTTGTAATCCTGGGAGGAAATGCTCCCTTGAAGCAAAAGTGTTCTCCCCCAAAAAATGCAAGGAGCTATCTTCTTGATAGCCAGGCAGATAATTCTCAGGTTTTGCCCC-ACAGAATCTCTATCTAAAATAGAGAAGTGGTCATGCCTAGT i macFas5.chr1 C 0 C 0 s calJac3.chr21 50440349 219 - 50472720 agtcactgggattacaggccagagccaccacgcctggTTTTCATCAGCAACGTTTCCTGAGGTTACAGAAAGATTTGTAATCCTGGGAAGAAACACTCC----AAGCAAAACTGTTATCCCCACAAA-ATACAAGGAGTTTTCTTCTTGATGGCCAGGCAGATAATTCTCTGGTTTTGCTCCAATAGAATCTCTATCTAAAATAGAGTGGTGGTCAGACCTAGT i calJac3.chr21 C 0 C 0 e ponAbe2.chrUn 11243442 0 + 72422247 C e papAnu2.chr1 98619895 1770 - 220367699 I a score=3256.000000 s hg38.chr1_KI270765v1_alt 60029 13 + 185285 GAAAAGTTAGAGg s nomLeu3.chr12 56439799 13 - 109391073 GAAAAGTTTGAGG i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128209792 13 + 229590362 GAAAAGTTTGAGG i rheMac3.chr1 C 0 C 0 e calJac3.chr21 50440568 0 - 50472720 C e ponAbe2.chrUn 11243442 0 + 72422247 C e papAnu2.chr1 98619895 1770 - 220367699 I e macFas5.chr1 124795614 0 - 227556264 C e panTro4.chr1_AACZ03149435_random 169030 0 + 173505 C a score=100.000000 s hg38.chr1_KI270765v1_alt 60042 1 + 185285 g s rheMac3.chr1 128209805 1 + 229590362 G i rheMac3.chr1 C 0 I 55 e calJac3.chr21 50440568 0 - 50472720 C e ponAbe2.chrUn 11243442 0 + 72422247 C e papAnu2.chr1 98619895 1770 - 220367699 I e macFas5.chr1 124795614 0 - 227556264 C e nomLeu3.chr12 56439812 0 - 109391073 C e panTro4.chr1_AACZ03149435_random 169030 0 + 173505 C a score=0.000000 s hg38.chr1_KI270765v1_alt 60043 873 + 185285 cctaacgtttaaatctgtaatccatcttgaattgagttttgtataaggtgtaaggaagggatccagtttcagctttcttcatatggctagccagttttcccagcaccatttattaaatagggaatcctttccccattgcttgtttttctcaggtttgtgaaagatcagatagttgtagatatgtggcattatttctgagggctctgttctgttccattgatctatatctctgttttggtaccagtaccatgctgttttggttactgtagccttgtagtatagtttgaagtcaggtagtgtgatgcctccagctttgttcttttggcttaggattgacttggcgatgtgggctcttttttggttccatatgaactttaaagtagttttttccaattctgtgaagaaaggcataggcaTTGGTAGcttggaaccaacccaaatgtccaacaatgatagactggattaagaaaatgtggcacatatacaccatggaatactatgcagccataaaaaatgatgagttcatgtcctttgtagggacatggatgaaattggaaaccatcattctcagtaaactatcgcaagaacaaaaaaccaaacaccgcatattctcactcataggtgggaattgaacaatgagatcacttggacacaggaaggggaatatcacactctggggactgtggtggggtcgggggaggggggagggatagcattgggagatatacctaatgctagatgacacgttagtgggtgcagcgcaccagcatggcacatgtatacatatgtaactaacctgcacaatgtgcacatgtaccctaaaacttagagtataataaaaaaaaaaaaaaattaaaaaaaaaaaaaaaaaaa e calJac3.chr21 50440568 0 - 50472720 C e rheMac3.chr1 128209806 55 + 229590362 I e ponAbe2.chrUn 11243442 0 + 72422247 C e papAnu2.chr1 98619895 1770 - 220367699 I e macFas5.chr1 124795614 0 - 227556264 C e nomLeu3.chr12 56439812 0 - 109391073 C e panTro4.chr1_AACZ03149435_random 169030 0 + 173505 C a score=6512.000000 s hg38.chr1_KI270765v1_alt 60916 13 + 185285 gaaaaGTTAGAGG s panTro4.chr1_AACZ03149435_random 169030 13 + 173505 GAAAAGTTAGAGG i panTro4.chr1_AACZ03149435_random C 0 C 0 s macFas5.chr1 124795614 13 - 227556264 GAAAAGTTTGAGG i macFas5.chr1 C 0 C 0 s calJac3.chr21 50440568 13 - 50472720 GAAAAGTTTGAGG i calJac3.chr21 C 0 C 0 e rheMac3.chr1 128209806 55 + 229590362 I e ponAbe2.chrUn 11243442 0 + 72422247 C e papAnu2.chr1 98619895 1770 - 220367699 I e nomLeu3.chr12 56439812 0 - 109391073 C a score=26816.000000 s hg38.chr1_KI270765v1_alt 60929 34 + 185285 GAACTCGCCCAATGTTGGGTTTCTTCAGatatat s panTro4.chr1_AACZ03149435_random 169043 34 + 173505 GAACTCGCCCAATGTTGGGTTTCTTCAGatatat i panTro4.chr1_AACZ03149435_random C 0 C 0 s nomLeu3.chr12 56439812 34 - 109391073 GAACTCACCCCATGTTGGCTTTCTTCAGatatat i nomLeu3.chr12 C 0 C 0 s macFas5.chr1 124795627 34 - 227556264 GAACTCGCCCAATGTTGGGTTTCTTCAGatatat i macFas5.chr1 C 0 N 0 s calJac3.chr21 50440581 34 - 50472720 GAACTTGCCCAACGTTGGGTTTCTTCAGAGCCAT i calJac3.chr21 C 0 C 0 e rheMac3.chr1 128209806 55 + 229590362 I e ponAbe2.chrUn 11243442 0 + 72422247 C e papAnu2.chr1 98619895 1770 - 220367699 I a score=2251.000000 s hg38.chr1_KI270765v1_alt 60963 21 + 185285 gtgtgtatatatatatattta s panTro4.chr1_AACZ03149435_random 169077 21 + 173505 gtgtgtgtgtgtatatatata i panTro4.chr1_AACZ03149435_random C 0 C 0 s nomLeu3.chr12 56439846 21 - 109391073 gtatgtatgtataaatatatg i nomLeu3.chr12 C 0 I 3896 s macFas5.chr1 124952404 6 - 227556264 gtgtgt--------------- i macFas5.chr1 N 0 C 0 s calJac3.chr21 50440615 8 - 50472720 GTATGTAT------------- i calJac3.chr21 C 0 C 0 e rheMac3.chr1 128209806 55 + 229590362 I e ponAbe2.chrUn 11243442 0 + 72422247 C e papAnu2.chr1 98619895 1770 - 220367699 I a score=3781.000000 s hg38.chr1_KI270765v1_alt 60984 29 + 185285 tatatatgtgtgtgtgtatatatgtgt------at s panTro4.chr1_AACZ03149435_random 169098 35 + 173505 tatgtgtgtgtgtgtgtgtgtatgtgtgtatatat i panTro4.chr1_AACZ03149435_random C 0 C 0 s macFas5.chr1 124952410 22 - 227556264 -----gtgtgtgtgtgtgtgtgtgtgt-------- i macFas5.chr1 C 0 C 0 e calJac3.chr21 50440623 0 - 50472720 C e rheMac3.chr1 128209806 55 + 229590362 I e ponAbe2.chrUn 11243442 0 + 72422247 C e papAnu2.chr1 98619895 1770 - 220367699 I e nomLeu3.chr12 56439867 3896 - 109391073 I a score=1452.000000 s hg38.chr1_KI270765v1_alt 61013 4 + 185285 atat s panTro4.chr1_AACZ03149435_random 169133 4 + 173505 atat i panTro4.chr1_AACZ03149435_random C 0 C 0 s nomLeu3.chr12 56443763 4 - 109391073 atat i nomLeu3.chr12 I 3896 C 0 s macFas5.chr1 124952432 4 - 227556264 gtgt i macFas5.chr1 C 0 N 0 e calJac3.chr21 50440623 0 - 50472720 C e rheMac3.chr1 128209806 55 + 229590362 I e ponAbe2.chrUn 11243442 0 + 72422247 C e papAnu2.chr1 98619895 1770 - 220367699 I a score=13020.000000 s hg38.chr1_KI270765v1_alt 61017 26 + 185285 atatatatatCTCCAAATATCTTAAA- s panTro4.chr1_AACZ03149435_random 169137 26 + 173505 atatatatatatCCAAATATCTTAAA- i panTro4.chr1_AACZ03149435_random C 0 C 0 s nomLeu3.chr12 56443767 26 - 109391073 atacatatatCTCCAAATATCCTAAA- i nomLeu3.chr12 C 0 I 3862 s macFas5.chr1 124795661 26 - 227556264 atatatatatatccaaatatCCTAAA- i macFas5.chr1 N 0 I 1 s calJac3.chr21 50440623 15 - 50472720 ------------TCAAACATCCTAGAA i calJac3.chr21 C 0 C 0 e rheMac3.chr1 128209806 55 + 229590362 I e ponAbe2.chrUn 11243442 0 + 72422247 C e papAnu2.chr1 98619895 1770 - 220367699 I a score=19454.000000 s hg38.chr1_KI270765v1_alt 61043 27 + 185285 GACACTGCCCTTCATCATTCCATGCCA s panTro4.chr1_AACZ03149435_random 169163 27 + 173505 GACACTGCCCTTCATCATTCCATGCCA i panTro4.chr1_AACZ03149435_random C 0 C 0 s nomLeu3.chr12 56447655 27 - 109391073 GACACTGCCCTTCATCATTCCATACCG i nomLeu3.chr12 I 3862 C 0 s macFas5.chr1 124795688 27 - 227556264 GACACATCCCTCCATCATTCCATGTTG i macFas5.chr1 I 1 C 0 s calJac3.chr21 50440638 27 - 50472720 GACATTGCCCTTCATCACTCCATGTCC i calJac3.chr21 C 0 C 0 e rheMac3.chr1 128209806 55 + 229590362 I e ponAbe2.chrUn 11243442 0 + 72422247 C e papAnu2.chr1 98619895 1770 - 220367699 I a score=596907.000000 s hg38.chr1_KI270765v1_alt 61070 558 + 185285 TTAGACATTTATAGGACCATGCATGGTGATCTCCTCCACACAAAAATAAATGCT-----------GGTGCAGAACAGGTAAGTGTACTATAAATTGAGTACATCAGCTTTTGGGCATTTTAAACCATTGGTCACACACGTTGGAGCAAGAGGGCAGGTTGATAGCAAGAGGGAGTGTTTCTCTTTCAGTTTTCCAATAGCAAAGTGATGTTTGCCACTGTCATTTCAGAGTGAGGTGACAAA---TTTT---TGTTGTTGTTTGGTTTTGTGGGGttt---------tttg--------ttcgtttttgagacaaggtctcactgtcccccaggctggagtgcagtggcacgatcaggg-ttacttttgccttgacctcatgaattcaagcaaacctccttactaatcctcctgagtagctgggactacaggcacgtgacaccacacccTGGGGTGTGAACTGGGATtttatattttcagttggctccctaatggaataggttcccttactattctggaatacagattgtcttcatggttgccaTTCTCGTGTGCATTATATTTCTACTAACCTGCTAAtttttt------------tttctttt s panTro4.chr1_AACZ03149435_random 169190 558 + 173505 TTAGACATTTATAGGACCAAGCATGGTGATCTCCTCCACACAAAAATAAATGCT-----------GGTGCAGAACAGGTAAGTGTACTATAAATTGAGTACATCAGCTTTTGGGCATTTTAAACCATTGGTCAGACACGTTGGAGCAAGAGGGCAGGTTGATAGCAAGAGGGAGTGTTTCTCTTTCAGTTTTCCAATAGCAAAGTGATGTTTGCCACTGTCATTTCAGAGTGAGGTGACAAA---TTGT---TGTTGTTGTTTGGTTTTGTGGGGttt---------tttg--------ttcgtttttgagacaaggtctcactgtcccccaggctggagtgcagtggcacgatcaggg-ttacttctgccttgacctcatgaattcaagcaaacctccttactaatcctcctgactagctgggactacaggcacgtgacaccacacccCGGGGTGTGAACTGGGATtttatattttcagttggctccctaatggaataggttcccttactattctggaatacagattgtcttcatggttgccaTTCTCGTGTGCATTATATTTCTACTAACCTGCTAAtttttt------------tttctttt i panTro4.chr1_AACZ03149435_random C 0 C 0 s nomLeu3.chr12 56447682 583 - 109391073 TTAGACATTTATAGGACCATGCATGGTGATCTTCTCCACACAAAAATAAATGCTggtgcagaacaggtgcagaacaggtAAGTG------AAATTCAGTACATCAGCTTTTGGGCATTTTGAGCCATGGGTCAGACATGTTAGAGCAAGAGGGCAGGTTGACAGCAAGAGGGAGTGTTTTTCTTTCAATTTTCCAATAGCAAAGTGATGTTTGCCACTGTCATTTCAGAGTGAGGCGAAGAT---TTGT---TGTTGTTGTCTGGCTTTGTGGGGttt---------tttgtttgtttttttgtttttgagacaaggtctcactgtcccccgggctggagtacagggacatgatcaggg-ttgcttctgcctggacctcgtgaattcaagcaaacctccttactactcctcccgagtagctgggactacaggcacgtgacatcacacccTGGGGTGTGAACTGGGATttgatgttttcagttggctccctaatggaataggatcccttactattctggaatacagatcgtcttcatgatgatcaTTCTCGTGTGCATTATATTTCTACTAACCTGCTAAtttttttgcttttttctctttcttct i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128209861 553 + 229590362 TTAGACATTTATAGGACCATGGATGGTGATCTCCTCCAGACAAAAATAAATGCT-----------GGTG-----CAGGTAAGTGTACTATAATTTGAGTA---TAGCTTTT-GGCATTTTAAACCATGAGTCAGACATGTTAGAGCAAGAGGGCAGGTTGATAGCAAGAGGGAATATTTTTCTTTTAATTTTCCAA-AGCAAAGTGATGTTTGCCACTGTCATTTCAGAGTGAGGTGACAATTTGTTGT---TGTTGTTGTTTGGTTTTGTGGGAtttt--------tttg--------tttgtttttgagacaaggtctcactgtcgcccaggctggaatgcggttacataatcagggtttacttctgccttgacctcacgaattcaagcaaacctccttactaatcctcatgagtagctgggactacaggtgcatgacactatacccTGGGGTGTGAATTGGGATtttatgttttcagttggctccctaatggaatagctttctttactattctggaatacagattatcttcatgagtatcaTTCTCATGTGCATTATATTTCTACTACCTTGCTAAAttttt------------tttttttt i rheMac3.chr1 I 55 N 0 s macFas5.chr1 124795715 546 - 227556264 TTAGACATTTATAGGACCATGGATGGTGATCTCCTCCAGACAAAAATAAATGCT-----------GGTG-----CAGGTAAGTGTACTATAATTTGAGTA---TAGCTTTT-GGCATTTTAAACCATGAGTCAGACATGTTAGAGCAAGAGGGCAGGTTGATAGCAAGAGGGAATATTTTTCTTTTAATTTTCCAA-AGCAAAGTGATGTTTGCCACTGTCATTTCAGAGTGAGGTGACAAT---TTGT---TGTTGTTGTTTGGTTTTGTGGGGtttttttgtttgtttg--------tttgtttttgagacaaggtctcactgtcgcccaggctggaatgcggttacataatcagggtttacttctgccttgacctcacaaattcaagcaaacctccttactaatcctcatgagtagctgggactacaggtgcatgacactatacccTGGGGTGTGAACTGGGATtttatgttttcagttggctccctaatggaatagctttctttactattctggaatacagattatcttcatgagtatcaTTCTCATGTGCATTATATTTCTACTACCTTGCTAAAt------------------------ i macFas5.chr1 C 0 C 0 s calJac3.chr21 50440665 558 - 50472720 TTAGACATTTATGGGACC-TGGATAGTGATCTCCTCCAGACAAAAATAAATGCT-----------GGTGCAGAACAGGAAAGTGTATTATAATTTGAGTACGTCATCTTTTGTGCATTTTAACCCATGGGTCAAACACGTTAGAGCAAGAGGGCAGGTTGACAGCAGGAGGGAGTGTTTTCCTTTTAATTTCCCAATAGCACAGTGGTGTCTGCCACAGTCATTCCAGAGTGAGGTGACAAT---CTGTAGAGGTTGCTGTTTGTTTCTGTGGGttttg--------tgtg--------tttgtttttgagacagagtctcactgtgacccaggctggactgcagtggcatgatcagggttgacttctgccttgacctcatgaattcaagc-aactcccttactcattctcccaagtagctggggctgcaggcatgtgacac-acacccTGGGGTGTGAACTGGGATTTGAGGTTTT-AGCTGGCTCCCTAATGG-ATAGGCTCCCTTACTCTCCTGGAATACAGACTGCCTACATGATTATCATTCTTGTGTGCATTGTATTTCTACTACCTTGCTATTTTCTT------------TTTCTTTT i calJac3.chr21 C 0 C 0 e ponAbe2.chrUn 11243442 0 + 72422247 C e papAnu2.chr1 98619895 1770 - 220367699 I a score=20326.000000 s hg38.chr1_KI270765v1_alt 61628 69 + 185285 ttcttttcttttcttt-------------------------tttttttttttttttgagacagagcctcactctgttgcccaggctgtattgca s panTro4.chr1_AACZ03149435_random 169748 85 + 173505 ttcttttcttttttttcttttttcttttttc---------ttttttttttttttttgagacagagcctcactctgttgcccaggctgtattgca i panTro4.chr1_AACZ03149435_random C 0 C 0 s nomLeu3.chr12 56448265 90 - 109391073 ttctttctctctctttctctttctttctttctttctttctttctttctttctttctttgacaaggcctcactctgttgcccaggctgcat---- i nomLeu3.chr12 C 0 C 0 s macFas5.chr1 124796261 56 - 227556264 --------------------------------------ttttttttttttctttttgagatggagtcttgctctgtcgcccaggctgtattgca i macFas5.chr1 C 0 I 4724 s calJac3.chr21 50441223 42 - 50472720 ---------------------------------------------TTCtttttgtagagacagggtttcatcatgttgccccggctg------- i calJac3.chr21 C 0 C 0 e ponAbe2.chrUn 11243442 0 + 72422247 C e papAnu2.chr1 98619895 1770 - 220367699 I a score=56148.000000 s hg38.chr1_KI270765v1_alt 61697 120 + 185285 tgcagtggcaggatctcagctcactgcaatctctgcctcctgggttcaagagattctcctgcctcagcctcctgagt-------agtttggattacagccttgctgacatacaccaccacgctgggc s panTro4.chr1_AACZ03149435_random 169833 120 + 173505 tgcagtggcaggatctcagctcactgcaatctctgtctcctgggttcaagcgattctcctgcctcagcctcctgagt-------agttgggattacagccttactgacatacaccaccacgctgggc i panTro4.chr1_AACZ03149435_random C 0 C 0 s nomLeu3.chr12 56448355 120 - 109391073 tgccgtggcaggatgtcagctcaccgcaacctctgcctcctgggttcaagccattccccttcctcagcctcctgagt-------acttgggattacagacttcctgacatacaccaccacgctggtc i nomLeu3.chr12 C 0 C 0 s macFas5.chr1 124801041 112 - 227556264 tgcaatggcacgatcttggctcactgcaacttccgcctcctgtgttcaagagattctcctgcctcagcctcctgagt-------agttgggattaca--------gacacacatcactaagcctggc i macFas5.chr1 I 4724 C 0 s calJac3.chr21 50441265 91 - 50472720 ----------------------------gtctcaaactcctaagcttcagggatccacccacctcagtgtccggtgtcccaaagcattgggattaca--------ggtataaaccaccgtgtctggc i calJac3.chr21 C 0 T 613 e ponAbe2.chrUn 11243442 0 + 72422247 C e papAnu2.chr1 98619895 1770 - 220367699 I a score=1655.000000 s hg38.chr1_KI270765v1_alt 61817 12 + 185285 attttttttttt s panTro4.chr1_AACZ03149435_random 169953 12 + 173505 attttttttttt i panTro4.chr1_AACZ03149435_random C 0 C 0 s nomLeu3.chr12 56448475 6 - 109391073 gatttt------ i nomLeu3.chr12 C 0 C 0 s macFas5.chr1 124801153 12 - 227556264 tttttttttttt i macFas5.chr1 C 0 C 0 e calJac3.chr21 50441356 613 - 50472720 T e ponAbe2.chrUn 11243442 0 + 72422247 C e papAnu2.chr1 98619895 1770 - 220367699 I a score=65500.000000 s hg38.chr1_KI270765v1_alt 61829 109 + 185285 ttttttttttttt-ggtatttttagtacagacggggtttcgcaatgttggtcaggctggtctcgaactcctgacctcagctga---tcAGAAGTAGGTGAGGTCAGAAAACGC s panTro4.chr1_AACZ03149435_random 169965 110 + 173505 ttttttttttttttggtatttttagtacagacggggtttcgcaatgttggtcaggctggtctcgaattcctgacctcagttga---tcAGAAGTAGGTGAGGTCAGAAAACGC i panTro4.chr1_AACZ03149435_random C 0 C 0 s nomLeu3.chr12 56448481 93 - 109391073 ---------------gtattcttagtacagacggggtttcgcgacgttggtcaggctggtctcacattcctgacctcagTTCACATTC-----CTGGTGAGGTCAGAAAACGC i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128372192 109 + 229590362 -ttttttttttttttgtatttttagtagagcgggactttagccatgttggtcagtctggtctcgaactcctgacctcagttga---tcAGAAGTAGGTGAGGTCAGAAAACAT i rheMac3.chr1 N 0 N 0 s macFas5.chr1 124801165 97 - 227556264 -------------ttgtatttttagtagagacagagtttcaccatgttggtcaagctggtctcgaactcctgacctcagttga---tcAGAAGTAGGTGAGGTCAGAAAACAT i macFas5.chr1 C 0 C 0 e calJac3.chr21 50441356 613 - 50472720 T e ponAbe2.chrUn 11243442 0 + 72422247 C e papAnu2.chr1 98619895 1770 - 220367699 I a score=669280.000000 s hg38.chr1_KI270765v1_alt 61938 848 + 185285 ACCCTGGGAGAGGCTGGCAAAATGCCCAGAACGGCCATCGCTAGGCCTGGGGTTTTCTTCTGTACTGAAATACTACTATTCATGT-AGTGCGGGGACAAAACCAATTAGATACTTCTGGGAGTTAAAAAGAGATGAATTTACAGTGCCATTTGAGAAGGGGTATTAAGGAATTTTCCAGGGTACTGACGCGTGTCAGGTGCAAACTGCAGGTTCGGAGAGAGCTAAGTATTTTCTGTCCATGAAGGTGATAAGGGGGGTCTTGAAGAAAGAGGAAGGGGGGAGGACACTGGCGCCAGAAATAGGAAAGGGCTGCTTGGGGGTGGGAAGGATGGGTCGGGGTGCTATCTAGAAAGCTGCCTGGCAGTGGATGTAGGATGTAGAAGCGAGACATCAAACAAGAAGCTGTCGCTTAAATAAAGTCTGAAGATAGACTAGATATGTAAACGGCAggagatagtagggaaactggacccgtctcctcataaaacttcccgccttatgtttcagggaggaccgcagcgcatttcggccaagacaggtgagactgcggttctgacctacgggcctcgatgaat-tgcgttagggcacctgggctccgggagagccgttccACTCCacaaagtaagcgtgttatgtctgcaaacgaacgggga--cactaagagccccaaaggccctgctttcATCCCAAAGAACAG-CCCCCGTCTGCGTAGTTTGTACCTGGCTCTGTGAGGTGAGAACACATTCCCCGCTAGCACAGAAATCCTACAAACTCCTGAGGGGGCTGCGGTTAGAAGCAGACGCTGTGTAAAAGGGGACTCTGGAAGCTAGAGAAAAACACGAAAATCTTC s panTro4.chr1_AACZ03149435_random 170075 850 + 173505 ACCCTGGGAGAGGCTGGCAAATTGCCCAGAACGGCCATCGCTAGGCCTGGGGTTTTCTTCTGTACTGAAATACTACTATTCATGT-AGTGCGGGGACAAAACCAATTAGATACTTCTGGGAGTTAAAAAGAGATTAATTTACAGTGCCATTTGAGAAGGGGTATTAAGGAATTTGCCAGGGTACTGACGCGTGTCAGGTGCAAACTGCAGGTTGAGAGAGAGCTAAGTATTTTCTGTCCATGAAGGTGATAAGGGGGGTCTTGAAGAAAGAGGGACGTGGGAGGACACTGGCGCCAGAAATAGGAAAGGGCTGCTTGGGGGTGGGAAGGATGGGTCGGGGTGCTATCTAGAAAGTTGCCTGGCAGTGGATGTAGGATGTAGAAGCGAGACATCAAACAAGAAGCTGTCGCTTAAATAAAGTCTGAAGAAAGACTAGATATGTAAACGGCAggagatagtagggaaactggacccgtctcctcataaaacttcccgtcttatatttcaggaaggatcgcagcgcatttcggccaagacaggtgagactgcagttctgacctgcgggcctcgatgaat-tgcgttagggcacctgggctccgggagagccgttccACTCCGcaaagtaagcgtgttatgtctacaacccaacggggacgcgctaagagccccaaaggccctgctttcATCCCAAAGAACAG-CCCCCGTCTGCGTAGTTTGTACCTGGCTCTGTGAGGTGAGAACACATTCCCCGCTAGCACAGAAATCCTACAAACTCCTGAGGGGGCTGCGGTTAGAAGCAGACGCTGTGTAAAAGGGGACTCTGGAGGCTAGAGAAAAACACGAAAACCTTC i panTro4.chr1_AACZ03149435_random C 0 C 0 s nomLeu3.chr12 56448574 850 - 109391073 ACCCTGGGAGAGGCTGGCAAAAAGCCCAGAACCGCCGTCGCTAGGCCTGGGGTTTTCATCTGTACTGAGATACTACTATTCATCTGAGTGCAGGGACAAAAGCAATTAGACAGTTCTGGTTGTTAAAAGGAGATGCATTGTCAGTGCCGTTTGAGAAGGGGTATTAAGGAATTTGCCAGGGTACTGACGCACGTCAGGGGCAAACCGCAGGTTGAGAGAGAGCTATGTATTTTCTGTCCGTGAAGGTGATAAGCGGGGGCTTGAAGAAAGATTGACGGGGGATTACACTGGCGCCAGAAATAGGAAAGGGCTGCTTGCGGGTGGGAAGGATGGGTCGGGTTGCCAACTAGAAGGTTGCCTGGCAGTGGATGCAGGATGTAGAAACGGGACGTCAAACAAGAAGCTGTCGCTTCAATAAAGTCTGAACTAAGACTAGATATGAAAACGGCAGGAGACAGTAGGGAAACTGGACCCGTctcctcataaatcttcccgccttatatttcggggaggatcgcagcgcatgtcggccaagacaggtgagactgcggttctgacctgcgggcctcgatgaat-tgcgttagggcacccgggctccgggagagccgttcccctccacaaagtaagcgtgttatgtcttcgaaagaacgggga--caccaagagccccaaaggccctgtttccaaccggaaGAACAGCCCCCCCTCTGCGTAGCTGGTACCTGGCTCTGTGAAGTGAGAACACATGCCCCGCTAGCACAGAAATCCTACAAACTCCTGAGGGGGCTGCGGTTAAGAGCAGAGGCTTTGTGAAACGTGACTCTGGAGGCTAGAGAAAAACACGAAAATTTTC i nomLeu3.chr12 C 0 I 1038 s rheMac3.chr1 128214475 845 + 229590362 ACCCTGGGAGAGGCTGGCACAATGCCCAGAACCGCCATCGCTAGGCCTGGGGTTTTCTTCTGTAGTG-GATACTAGTATTCATGT-AGTGCAGGGACAAAACCAATTAGATACTTCTGGGAGTTAAAAAGAGATGAATTTACAGTGCCATTTGAGAAAGGGTATTAAGAAATTTGCCAGGGTACTGACTCGTGTCAGGTGCAAACCTCAGGTTGAGAGAGAGCTAAGTATTTTCTGTCCATGAAGGTGATCAGCGGGGGCCTGAAGAAAGAGGGACGGGGAAGGACGCTGGCGCCAGAAATAGGAAAGGGCTGCTTGGGGGTGGGAAGGATGAGTAGGGGTGCTACCTTGAAAGTTCCCTGATATTGGATGTAGAATATGCAAGCGAGACATCAAACAAGAAGCTGTCGTTTAAATAAAGACTGAAGAAAAATTAGATATGTAAACGGCAAGAAATAGTAAGGAAACTGGACCcggctcctcataaaacttcccgccttatatttcagggaggatcgcagcgcatttcggtcaagaaaggtgagactgcggttctgacctgcgggcctcgatgaatatgcgctagggctcctgggcgccgggagagccgttcgcttacacaaagtaagcgggttatgtctacaaccaaacgggga--cactaagagtcccaaagaccgtgcttCT-TCCCAAAGAACAG-CGCCGGTCTGCGTAGTTTGTACCTGGCTCTATGAGGTGAGAACACATTCTCCGCTAGCACAGAAATCCTACAAACTCCTGAGGGGGCTGAGGTTAGAAGCGGAGGCTGTGTAAAAGGAGA--CTAGAGGCTAGGGAAATACACGAAGATTTTT i rheMac3.chr1 N 0 C 0 s macFas5.chr1 124801262 845 - 227556264 ACCCTGGGAGAGGCTGGCACAATGCCCAGAACCGCCATCGCTAGGCCTGGGGTTTTCTTCTGTAGTG-GATACTAGTATTCATGT-AGTGCAGGGACAAAACCAATTAGATACTTCTGGGAGTTAAAAAGAGATGAATTTACAGTGCCATTTGAGAAAGGGTATTAAGAAATTTGCCAGGGTACTGACTCGTGTCAGGTGCAAACCGCAGGTTGAGAGAGAGCTAAGTATTTTCTGTCCATGAAGGTGATCAGCGGGGGCCTGAAGAAAGAGGGACGGGGAAGGACGCTGGCGCCAGAAATAGGAAAGGGCTGCTTGGGGGTGGGAAGGATGGGTAGGGGTGCTACCTTGAAAGTTCCCTGATATTGGATGTAGAATATGCAAGCGAGACATCAAACAAGAAGCTGTCGTTTAAATAAAGACTGAAGAAAAATTAGATATGTAAACGGCAAGAAATAGTAAGGAAACTGGACCcggctcctcataaaacttcccgccttatatttcagggaggatcgcagcgcatttcggtcaagaaaggtgagactgcggttctgacctgcgggcctcgatgaatatgcgctagggctcctgggcgccgggagagccgttcgcttacaCAAAGTAAGCGGGTTATGTCGACAACCAAACGGGGA--CACTAAGAGTCCCAAAGACCGTGCTTCT-TCCCAAAGAACAG-CGCCGGTCTGCGTAGTTTGTACCTGGCTCTATGAGGTGAGAACACATTCTCCGCTAGCACAGAAATCCTACAAACTCCTGAGGGGGCTGCGGTTAGAAGCAGAGGCTGTGTAAAAGGAGA--CTAGAGGCTAGGGAAAAACACGAAGATTTTT i macFas5.chr1 C 0 C 0 e calJac3.chr21 50441356 613 - 50472720 T e ponAbe2.chrUn 11243442 0 + 72422247 C e papAnu2.chr1 98619895 1770 - 220367699 I a score=30066.000000 s hg38.chr1_KI270765v1_alt 62786 41 + 185285 ACAGAGCGTGAGAACCCAAGACGCTGGAGACCGTGGATCAA s panTro4.chr1_AACZ03149435_random 170925 40 + 173505 ACAGAGCGTGAGAACCCAA-ACGCTGGAGACCGTGGATCAA i panTro4.chr1_AACZ03149435_random C 0 C 0 s nomLeu3.chr12 56450462 41 - 109391073 acaGAGCGTGAGAACCCAAGAGACTGGAGACCATGGATCAA i nomLeu3.chr12 I 1038 C 0 s rheMac3.chr1 128215320 41 + 229590362 ACACAGCGTGAGAACGCAAGAGACTGGAAACCATGGACCAA i rheMac3.chr1 C 0 N 0 s macFas5.chr1 124802107 41 - 227556264 ACACAGCGTGAGAACGCAAGAGACTGGAAACCATGGACCAA i macFas5.chr1 C 0 C 0 e calJac3.chr21 50441356 613 - 50472720 T e ponAbe2.chrUn 11243442 0 + 72422247 C e papAnu2.chr1 98619895 1770 - 220367699 I a score=38600.000000 s hg38.chr1_KI270765v1_alt 62827 105 + 185285 TTTCTGCAATAAGCAGCCTTATGTTCAAAGGGAAGAGCTATGCAGTC------TTCGCGCTGGTTAGCCTAGGATAAAC------------------CGGCTGACACTCCTTACTTCTCCAGC---GAGAAA s panTro4.chr1_AACZ03149435_random 170965 105 + 173505 TTTCTGCAATAAGCAGCCTTATGTTCAAAGGGAAGAGCTATGCAGTC------TTCGCGCTGGTTAGCCTGGGATAAAC------------------CGGCTGACACTTCTTACTTATCCAGC---GAGAAA i panTro4.chr1_AACZ03149435_random C 0 C 0 s nomLeu3.chr12 56450503 126 - 109391073 TTTGTGCAATAAGCAGCCTCACGTTGAAAGGGAAGAGCTATGCAGCC------TTCGCGCTAGTTAGCTTGTGATAAGCAGGCTCACAACTCAACAACGGCTGACACTTCTTCCTTCTCCAGCGAGGAGAAG i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128373819 105 + 229590362 TCTCTGCAGAAGGCAGCCCCGCATAGAAAAGGAAGAGCTGTGCGGCA------TTCACGGTGGTTACCTTATGTTGCAA------------------GGGCTGACGCTTCTTATTTCTCCTCT---GACAGA i rheMac3.chr1 N 0 I 101 s macFas5.chr1 124802148 88 - 227556264 -----------CGCAGCCCCACGT---------GGAGCTGTGCAGCACTGGTGTTCGCGGTAGCTAGATTGTGGT---A------------------AGCCTAACGCTTCCCACTGTTCCTTC---GCCAGA i macFas5.chr1 C 0 C 0 e calJac3.chr21 50441356 613 - 50472720 T e ponAbe2.chrUn 11243442 0 + 72422247 C e papAnu2.chr1 98619895 1770 - 220367699 I a score=32412.000000 s hg38.chr1_KI270765v1_alt 62932 133 + 185285 GACAGCGACATGCCACTTCCTATTTTGCAGGCTTCTGACTGTAACAGTAACACTTAAGGGCACCACAAAAAACACAAACCAATGAAAGAAAGCAGTAACAAGGAGCGTACGGTCTATTTTTGAAACCAGAAAA s panTro4.chr1_AACZ03149435_random 171070 133 + 173505 GACAGCGACACGCCACTTACTATTTTGAAGGCTTCTGACTGCAACAGTAACACTTAAGGGCATCACAAAAAACACAAACCAATAAAAGAAAGCAGTTATAATTACCGTACAGTCTTTTTTTGAAACCAGAAAA i panTro4.chr1_AACZ03149435_random C 0 C 0 s nomLeu3.chr12 56450629 133 - 109391073 GACGGCGACATGCCACTTCCTATTTTCCAGCCTCCTGACTGCAACAATAACACTCAAGGGCAGCACCAAAGAGGCAAAGCAACGGAAGAAAGCGGTAACGCTTGCCGGGCAGCCTGTTCTTCAAACCACGAAA i nomLeu3.chr12 C 0 C 0 s macFas5.chr1 124802236 121 - 227556264 -GAGGCAACACGTTTCTTTCTATTTCCCAGCTTT---AGTAGTATAATAACACCAACGACCAACACAA-------AAACCAGTAGAAAAAAAACGTAACCCTTGGCTGACAATCTGTTATTTAAACTGGAAA- i macFas5.chr1 C 0 C 0 e calJac3.chr21 50441356 613 - 50472720 T e rheMac3.chr1 128373924 101 + 229590362 I e ponAbe2.chrUn 11243442 0 + 72422247 C e papAnu2.chr1 98619895 1770 - 220367699 I a score=251478.000000 s hg38.chr1_KI270765v1_alt 63065 317 + 185285 AAAGAAATcagggaaaagcacggacacagccccccactaccacaaattatgcagtcgagtttcccacatttggggaaatcgcaggggtcagcacatccggagtacaatgaataagcctcagccctgggaaaaccaccttcgtggtcacgttatctcccctgccaagtaaatatGAGCTCCTGCACCTCCGCCCCG-----------TACGCCTCACCCTTTACACGCACGGTCACTT-CCCCGCGCACCCGCGAGCCCTCCTAGCCCTGACACACAGCTGGGACTCTCAGGTCCGACCAGCGGTCCTGAACCCGCTCCCACGGCACGGG s panTro4.chr1_AACZ03149435_random 171203 327 + 173505 AAAGAAATcaggggaaagcgcggacgcagtcccccactaccacaaattatgcagtcgagtttcccacatttggggaaatcgcaggggtcagcacatccggagtgcaatggataagcctc-gccctgggaaaaccaccttcgtgatcatggtatctcccctgccaggtaagtatGAGCTCTTGCACCTCCGCCCCGCCACAGCCTCACACGCCTCACCCTTTACACGCACGGTCACTT-CCCCGCGCACCCGCGAGCCCTCCTAGCCCTGACACACCGCTGGGACTCTCAGGTCCGACCAGCGGTCCTGAACCCGCTCCCACGGCACGGG i panTro4.chr1_AACZ03149435_random C 0 C 0 s nomLeu3.chr12 56450762 326 - 109391073 AA--AACccaggggaaagcgcgaacgcagtcccccactaccacaaattatgcagtccagtttcccacatttggggaaatcgcaggggtcagcacatccggagtgcaatggataagcctc-gccctgggaaaaccaccttcgtgatcatggtatctcccctgccaggtaagtatGAGCTCCTGCACCTCCGCCCCGCCACAGCCTCACGTGCCTCCCCCCTTACACGCACGGTCACTTGCCCCGCGCACCCCCGAGCCCTCCTAGCCCTGACACACAGCTGGGACTCTCAGGTCCCACCAGCGGTCCTGAACCCCCTCCCACGGCACGAG i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128374025 327 + 229590362 AAATAGTTcaggggaaagcgcgaacgcagtcccccactaccacaaatcatgcagtcgagtttcccatatttggggaaatcgca-gagtcagcacacccgtagtgcaataggtaagtctc-gccctgagaaaaccaccttcgtggtcatggtatttcccttactaggtaagcatGAGTTTCCGCACCTCCGCCCCGCCACAGCCTCATACGTCTCACCCTTTACACACAAGGTCACTTGCCCCGTGCACTCCCGAGCCCTTCTAGTCCTGGCACACAGCTGGGACTCTCAGGTCCGACCAGCGGTCCCGAACCCGCTCCCACAGCACGGG i rheMac3.chr1 I 101 N 0 s macFas5.chr1 124802357 323 - 227556264 ----AAGTcaggagaaagcgcgaacgcaatcccccaccaccacaaattatgcagtcgagtttcccatattcggggaaatcgca-gagtcagcacatccgtagtgcaatggataagtctc-gccctgggaaaatcaccttcgtgatcacggtatttctcctgccgggtaagtatGAATTTCCGCCCCTCCGCCCCGCCACAGCCTCATACGCTTCACCCTTTGCACACACGGTCACTTGCCCCGCGCACTCCCGAGTCCTTCTAGCCCTGACAGACAACTGGGACTCTCAGGTCCGACCAGCGGTCCTGAACCCGCTCCTACAGCACGGG i macFas5.chr1 C 0 C 0 e calJac3.chr21 50441356 613 - 50472720 T e ponAbe2.chrUn 11243442 0 + 72422247 C e papAnu2.chr1 98619895 1770 - 220367699 I a score=286006.000000 s hg38.chr1_KI270765v1_alt 63382 397 + 185285 AACTCCTTCGTGGCGAAGCAGCATGTGGCGAAGC-G-CAGCCTCTGCGCTGCCTCATCTACATAGAAGTCGCCCTATCCGTGATGTCACCGACAGTGCCTTTCCCAGTCC-CCGTCTGCTCTTCCACCCCAACCTCCGCCAACTCAGCCGACCAACCCGCTGCT-GAGCCGGCAAAGGGAAGTGACGTCTGTC-TCTCCCTTTTTTCTCTCCCGCTCCCTTGTCTGTTCTC-TCCCAAAGAAGCTGGTCCTTAGCTTCTATTGCGGAGCAACCTTTCGGCGACCAGCTGGAGCCTGGGCACCCTTCTTCAAATAATGGCCTTTAATTCGCAGACGAGAACGTTTAGGATGACAAAAGAAACT--TTTTTTTCACGTCCTTACCCTTGTGATGAAGCATTCCGCTt s panTro4.chr1_AACZ03149435_random 171530 400 + 173505 AACTCCTTCGTGGCGAAGCAGCATGTGGCGAAGCAG-CAGCCTCTGCGCTGCCTCATCTACATAGAAGTCGCCCTATCCGTGATGTCACCGACAGTGCCTTTCCCAGTCC-CCGTCTGCTTTTCCGCTCCACTCTCCCCCAACTCAGCCGACCAACCCGCTGCC-GAGCCGGCAAAGGGAAGTGACGTCTGCC-TCTCCCTTTTTTCTCTCCCGCTCCCTAGTCTGTTCTC-TCCCAAAGAAGCTGGTCCTTAGCTTCTATTGCGGAGCAACCTTTCGGCGACCAGCTGGAGCCTGGGCACCCTTCTTCAAATAATGGCTTTTAATTCGCAGACGAGAACGTTTAGGATGACAAAAGAAACTGGTTTTTTTCACGTCCTTACCCTTGTGATGAAGCATTCCGCTT i panTro4.chr1_AACZ03149435_random C 0 C 0 s nomLeu3.chr12 56451088 402 - 109391073 AACTCCTTCGTGGCGAAGCAGCATGTGGCCAAGCAGCCAGCCTCTGCGCTGCCTCATCTACATAGAAGTCGCCCTATCCGTGATGTCACCGACAGTGCCTTTCCCAGTCC-CCGTCGGCTCTTCCGCACCACCCTCCGCCAACTCAGCTGGCCCTCTCGCTGCCGGAGCCGGCAAGCGGAAGTGACGTCCGCC-TCTCCCTTTGTTCCCTCCCGCTGCCTCATCTGTTCTC-TCCCGAAGAAGCTGGTGCTTAGCCTCCGTTGCGGAGCAACTTTTCGGCCACCAGCTGGAGCCTGGGCACCCTTCTTCAAATAATGGCTTGTGATTCGCAGACTAGAACGTTTAGGATTACAAAAGAACCTGGTTTTCTTCACATCCTTATCCCTGTGATGAAGGATTCCGCTT i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128215876 389 + 229590362 AACTTCTTCGTGGCGAAGCAGCAGGTGGGGAAGCAG-CAGCCCCTGCGCTGCCTCATCTACATAGAAGTCGCCCTCTCCGTGATGTCACTGACAGTGCCCTTCCCAGTCCACCCTCTGCTTTTCTGCC-------------ATTCAGCAGACCAACCCGCTGCA-GAGCCCACAAGGGGAAGTGACGTCTACCATCTCCTTTTTTTTCCTCCCGCCCCCGCATCTGTTCTCTTCCCAAAGAAGCTGATActtagcctgtgttgcggggcaacctttgggcggccagatggagcctgga-acccttcttcaaataatggcttttaattcgcagactagaacgtttaggattacaaaagaaaccggttCTCTTCCCGTCCTTAACCTTGTGATGTAGCATTCCGCTT i rheMac3.chr1 N 0 N 0 s macFas5.chr1 124802680 388 - 227556264 AACTCCTTCGTGGCGAAGCAGTAGGTGGGGAAGCAG-CAGCCCCTGCGCTGCCTCATCTACATAGAAGTCGCCCTCTCCGTAATGTCACTGACAGTGCCCTTCCCAGTCCACCCTCTGCTTTTCTGCC-------------ATTCAGCAGACCAACTCGCTGCA-GAGCCCACAAGGGGAAGTGACGTCTACCATCTTC-TTTTTTTCCTTCCGCCCCCGCATCTGTTCTCTTCCCAAAGAAGTTGATActtatcctgtgttgcggggcaacctttgggcggccagatggagcctgga-acccttcttcaaataatggcttttaattcgcagactagaacgtttaggattacaaaagaaaccggttCTCTTCACGTCCTTAACCTTGTGATGTAGCATTCCGCTT i macFas5.chr1 C 0 N 0 e calJac3.chr21 50441356 613 - 50472720 T e ponAbe2.chrUn 11243442 0 + 72422247 C e papAnu2.chr1 98619895 1770 - 220367699 I a score=3388.000000 s hg38.chr1_KI270765v1_alt 63779 14 + 185285 acatatatatatgt s panTro4.chr1_AACZ03149435_random 171930 14 + 173505 ACATATATATATGT i panTro4.chr1_AACZ03149435_random C 0 C 0 s nomLeu3.chr12 56451490 14 - 109391073 ACATATACACATGT i nomLeu3.chr12 C 0 C 0 e calJac3.chr21 50441356 613 - 50472720 T e ponAbe2.chrUn 11243442 0 + 72422247 C e papAnu2.chr1 98619895 1770 - 220367699 I a score=10216.000000 s hg38.chr1_KI270765v1_alt 63793 51 + 185285 aatgttgggtttcttcagatatatatatata----------------------------tatgtatatgtgtataaata s panTro4.chr1_AACZ03149435_random 171944 79 + 173505 AATGTTGGGTTTCTTCAGgtatatatatatatatatatatatatatatatgtatgtatgtatgtatatgtgtataaata i panTro4.chr1_AACZ03149435_random C 0 C 0 s nomLeu3.chr12 56451504 50 - 109391073 -ATGATTGGTTtatatatatatatatatata----------------------------tatatatatatacatatatC i nomLeu3.chr12 C 0 C 0 s macFas5.chr1 124952380 67 - 227556264 AATGCTGGATTTCTTCAGAGAGGGgtgtgtg------------tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtC i macFas5.chr1 N 0 C 0 e calJac3.chr21 50441356 613 - 50472720 T e ponAbe2.chrUn 11243442 0 + 72422247 C e papAnu2.chr1 98619895 1770 - 220367699 I a score=76219.000000 s hg38.chr1_KI270765v1_alt 63844 97 + 185285 tccaaatatCCTAAAAGACACGGCCCTTCATGATTCCATGCCATTAGACATTTATAGGACCATGCATGGTGATCTCCTCCACACAAAAATAAATGCT s panTro4.chr1_AACZ03149435_random 172023 97 + 173505 tCCAAATATCCTAAAAGACACGGCCCTTCATGATTCCATGCCATTAGACATTTATAGGACCATGCATGGTGATCTCCTCCACACAAAAATAAATGCT i panTro4.chr1_AACZ03149435_random C 0 C 0 s nomLeu3.chr12 56451554 97 - 109391073 TCCAAATATCCTAAAAGACACTGCCCTTCATCATTCCATACCGTTAGATATTTATAGGACCATGCATGGTGATCTTCTCCACACAAAAATAAATGCT i nomLeu3.chr12 C 0 I 3886 s rheMac3.chr1 128366968 96 + 229590362 tCCAAATATCCTAAAAGACACTGCCCTTCATCATTCCATGCTGTTAGACA-TTATAGGACCATGGATGGTGATGTCCTCCAGAGAAAGATAAATGCT i rheMac3.chr1 N 0 C 0 s macFas5.chr1 124952447 96 - 227556264 CCCAAATATCCTAAAAGACACTGCCCTTCATCATTCCATGCTGTTAGACA-TTATAGGACCATGGATGGTGATGTCCTCCAGAGAAAGATAAATGCT i macFas5.chr1 C 0 C 0 e calJac3.chr21 50441356 613 - 50472720 T e ponAbe2.chrUn 11243442 0 + 72422247 C e papAnu2.chr1 98619895 1770 - 220367699 I a score=15265.000000 s hg38.chr1_KI270765v1_alt 63941 19 + 185285 GGTGCAGAACAGGTAAGTG------ s panTro4.chr1_AACZ03149435_random 172120 19 + 173505 GGTGCAGAACAGGTAAGTG------ i panTro4.chr1_AACZ03149435_random C 0 C 0 s nomLeu3.chr12 56455537 19 - 109391073 ggtgcagaacaggtAAGTG------ i nomLeu3.chr12 I 3886 C 0 s rheMac3.chr1 128367064 25 + 229590362 GGTGCAGAACAGGTAAGTGTACTAT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 124952543 25 - 227556264 GGTGCAGAACAGGTAAGTGTACTAT i macFas5.chr1 C 0 C 0 e calJac3.chr21 50441356 613 - 50472720 T e ponAbe2.chrUn 11243442 0 + 72422247 C e papAnu2.chr1 98619895 1770 - 220367699 I a score=46417.000000 s hg38.chr1_KI270765v1_alt 63960 41 + 185285 AAATTGAGTACATCAGCTTTTGGGCATTTTAAACCATGGGT s panTro4.chr1_AACZ03149435_random 172139 41 + 173505 AAATTGAGTACATCAGCTTTTGGGCATTTTAAACCATGGGT i panTro4.chr1_AACZ03149435_random C 0 C 0 s nomLeu3.chr12 56455556 41 - 109391073 AAATTCAGTACATCAGCTTTTGGGCATTTTGAGCCATGGGT i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128367089 41 + 229590362 AATTTGAGTACATCAAGGTTTGGGCATTTTAAACCATGGGT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 124952568 41 - 227556264 AATTTGAGTACATCAAGTTTTGGGCATTTTAAACCATGGGT i macFas5.chr1 C 0 C 0 s calJac3.chr21 50440743 41 - 50472720 AATTTGAGTACGTCATCTTTTGTGCATTTTAACCCATGGGT i calJac3.chr21 T 613 I 140 e ponAbe2.chrUn 11243442 0 + 72422247 C e papAnu2.chr1 98619895 1770 - 220367699 I a score=105607.000000 s hg38.chr1_KI270765v1_alt 64001 140 + 185285 CAGAAATGTTAGGGCAAGAAGGCAGGTTGACAGCAAGAGGGAGTGTTTTTCTTTCAATTTTCCAATAGCAAAGTGTTGTTTGCCGCTGTCAGTTCAGAGTGAGGAGACAAT---TTGTTGTTGTTGTCTGGTTTTGTGGGGGt s panTro4.chr1_AACZ03149435_random 172180 140 + 173505 CAGAAATGTTAGAGCAAGAAGGCAGGTTGACAGCAAGAGGGAGTGTTTTTCTTTCAATTTTCCAATAGCAAAGTGTTGTTTGCCGCTGTCATTTCAGAGTGAGGAGACAAT---TTGTTGTTGTTGTCTGGTTTTGTGGGGGt i panTro4.chr1_AACZ03149435_random C 0 C 0 s nomLeu3.chr12 56455597 138 - 109391073 CAGACATGTTAGAGCAAGAGGGCAGGTTGACAGCAAGAGGGAGTGTTTTTCTTTCAATTTTCCAACAGCAAAGTGATGGTTGCTACTGTCCTTTCAGTGTGAAGTGACAAT---TTTTTGTTTTTGTCTGGCTTTGTGGGG-- i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128367130 141 + 229590362 CAGACATGTTAGAGCAAGAGGGCAGGTTGATAGCAAGAGGGAGTATTTTTCTTTTAATTTTCCAATAACAAAGTTATGTTTGCCACTGTCATTTCAGAGTGATGTGACAATTTGTTGTTGTTGTTGTTTGGTTTTGGGGGG-- i rheMac3.chr1 C 0 C 0 s macFas5.chr1 124952609 141 - 227556264 CAGACATGTTAGAGCAAGAGGGCAGGTTGATAGCAAGAGGGAGTATTTTTCTTTTAATTTTCCAATAACAAAGTTATGTTTGCCACTGTCATTTCAGAGTGATGTGACAATttgttgttgttgttgtttggttttgtGGGG-- i macFas5.chr1 C 0 C 0 e calJac3.chr21 50440784 140 - 50472720 I e ponAbe2.chrUn 11243442 0 + 72422247 C e papAnu2.chr1 98619895 1770 - 220367699 I a score=2784.000000 s hg38.chr1_KI270765v1_alt 64141 5 + 185285 ttttg s panTro4.chr1_AACZ03149435_random 172320 5 + 173505 ttttg i panTro4.chr1_AACZ03149435_random C 0 C 0 s nomLeu3.chr12 56455735 5 - 109391073 ttttg i nomLeu3.chr12 C 0 I 286 s calJac3.chr21 50440924 5 - 50472720 ttttg i calJac3.chr21 I 140 C 0 e rheMac3.chr1 128367271 0 + 229590362 C e ponAbe2.chrUn 11243442 0 + 72422247 C e papAnu2.chr1 98619895 1770 - 220367699 I e macFas5.chr1 124952750 0 - 227556264 C a score=320530.000000 s hg38.chr1_KI270765v1_alt 64146 286 + 185285 tttg-ttttttagtttgtttttgagacaaggtctcactgtcccccaggctggagtgcagtggcacgatcaggg-ttacttctgccttgacctcatgaattcaagcaaacttccttaccaatcctcccgagtagctgggactacaggcatgtgacaccacacccTGGGGTGTGAACTGCGATtttatattttcagttggctccctaatggaataggttcccttactattctggaatacagattgtcttcatgattatcaTTCTCGTGTGCATTATATTTCTACTACCCT s panTro4.chr1_AACZ03149435_random 172325 287 + 173505 tttgtttttttagtttgtttttgagacaaggtctcactgtcccccaggctggagtgcagtggcatgatcaggg-ttacttctgccttgacctcatgaattcaagcaaacttccttaccaatcctcccgagtagctgggactacaggcacgtgacaccacacccTGGGGTGTGAACTGGGATtttatattttcagttggctccctaatggaataggttcccttacttttctggaatacagattgtcttagtgattatcaTTCTCGTGTGCATTATATTTCTACTACCCT i panTro4.chr1_AACZ03149435_random C 0 C 0 s nomLeu3.chr12 56456026 285 - 109391073 tttg-tttttt-gtttgtttttgagacaaggtctccctgaccccctggctgaagtacaggggcatgatcaggg-tttcttctgccttaacctcatgaattccagcaaacctccttactaatcctccggagtagctgggactacaggcacgtgacaccacactcTGGGGTGTGAACTGGGATttgatgttttcagttggctccctaatggaataggatccctttctattctggaatacaggtcgtcttcatgattatcaTTCTCGTGTGCATTATATTTCTACTATACT i nomLeu3.chr12 I 286 C 0 s rheMac3.chr1 128367271 286 + 229590362 -TTG-tttatttgtttgtttttgagacaaggtctcactgtcgcccaggctggagtgcggtggcatgatcagggtttacttctgccttggcctcacgaagtcaaacaaacctccttactaatcctcccaagtagctgggactacaggcaggtgacaccacacccTGGGGTGTGAACGGGGATttgatgttttcagttggctccctaatggaataggtttccttactattctggaatagagattgtcttcatgattatcaTTCTCGTGTGCATTATATTTCTACTACCTT i rheMac3.chr1 C 0 I 20 s macFas5.chr1 124952750 286 - 227556264 -ttg-tttgtttgtttgtttttgagacaaggtctcactgtcgcccaggctggagtgcggtggcatgatcagggtttacttctgccttggcctcacgaagtcaaacaaacctccttactaatcctcccaagtagctgggactacaggcaggtgacaccacacccTGGGGTGTGAACTGGGATttgatgttttcagttggctccctaatggaataggtttccttactatgctggaatagagattgtcttcatgattatcaTTCTCGTGTGCATTATATTTCTACTACCTT i macFas5.chr1 C 0 C 0 s calJac3.chr21 50440929 275 - 50472720 ---------tgtgtttgtttttgagacagagtctcactgtgacccaggctggactgcagtggcatgatcagggttgacttctgccttgacctcatgaattcaagc-aactcccttactcattctcccaagtagctggggctgcaggcatgtgaca-cacacccTGGGGTGTGAACTGGGATTTGAGGTTTT-AGCTGGCTCCCTAATGG-ATAGGCTCCCTTACTCTCCTGGAATACAGACTGCCTACATGATTATCATTCTTGTGTGCATTGTATTTCTACTACCTT i calJac3.chr21 C 0 C 0 e ponAbe2.chrUn 11243442 0 + 72422247 C e papAnu2.chr1 98619895 1770 - 220367699 I a score=3350.000000 s hg38.chr1_KI270765v1_alt 64432 5 + 185285 GCTAA s panTro4.chr1_AACZ03149435_random 172612 5 + 173505 GCTAA i panTro4.chr1_AACZ03149435_random C 0 C 0 s nomLeu3.chr12 56456311 5 - 109391073 GCTAA i nomLeu3.chr12 C 0 C 0 s macFas5.chr1 124953036 5 - 227556264 ACTAA i macFas5.chr1 C 0 I 19 s calJac3.chr21 50441204 5 - 50472720 GCTAT i calJac3.chr21 C 0 I 3737 e rheMac3.chr1 128367557 20 + 229590362 I e ponAbe2.chrUn 11243442 0 + 72422247 C e papAnu2.chr1 98619895 1770 - 220367699 I a score=704838.000000 s hg38.chr1_KI270765v1_alt 64437 603 + 185285 tttttttctttttgagacagagtcccgctctgtcacccaggctgtattgcagtggcaggatctcagctcactgtagcctccacttcccgggttcaaacgattcttttgcttcagcctcctgagtagccacctggctaatttttgtgtttttagtagagacagggtttcaccaggttgg-caggctggtctcgaactcctgacctcaagggatcgacccgcttcagcctcccaaagtgctgggattacaggcatgagctaccacgcctggcTCTCAAACCATTTTAAGTAAGCAAAGGCAGATTTGTCTGGCTT--TTTAGTACATTGCTGAATTATCCTCCAATCTATATTTTTAGGAAGGACCTGGGGAATGGCAACATGCACATATTTGGCTAAAATGTGAAC-CTTTCATGTTCTGC------------TTGAAAATCCTtccaatttgccttttgcaaccag-ttagtggccttgccttctt-caccagaatgtgaattaattgataaaggccagaatatttgggctcaaaggtttcgacagttaagtcgaattttctgccaaagcctataggatcttggagCCTGCTTTAGAAACAGAAGAACGAAATGTGTTTAA s panTro4.chr1_AACZ03149435_random 172617 603 + 173505 tttttttctttttgagacagagtcttgctctgtcacccaggctgtattgcagtggcaggatctcagctcactgtagcctccacctcccgggttcaaacgattcttttgcttcagcctcctgagtagccacctggctaatttttgtatttttagtagagacagggtttcaccaggttgg-caggctggtctcgaactcctgacctcaagggatccacctgcttcagcctcccaaagtgctgggattacaggcatgagctacgacgcctggcTCTCAAACCATTTTAAGTAAGCAAAGACAGATTTGTCTGGCTT--TTTAGTACATTGCTGAATTATCCTCCAATCTATATTTTTAGGAAGGACCTGGGGAATGGCAACATGCACATATTTGGCTAAAATGTGAAC-CTTTCATGTtctgc------------ttgaaaatccttccaatttgccttttgcaaccag-ttagtggccttgccttctt-caccagaatgtgaattaattgataaaggtcagaatatttgggctcaaaggtttcgacagttaagtcgaattttctgccaaagcctatagcatcttGGAGCCTGCTTTAGAAACAGAAGAACGAAATGTGTTTAA i panTro4.chr1_AACZ03149435_random C 0 C 0 s nomLeu3.chr12 56456316 612 - 109391073 Cttttttctttttgagacggcgtctcgctctttcacccaggctttattgcagtggcaggatctcagctcactgtagcctccacctcccgtgttcaaacgattcttttgcttcagcctcctgagtagccacctggctaatttttgta-ttttagtatagaaagggtttcaccaggttgg-caggctggtcccgaactcctgatgtcaagtgatccaccagcttcagcctcccaaagtgctgggattccaggcatgagctaccatgcctggcTCTCAAACCGTTTTAAGTAAGC--AGACACATTTGTCTGGCTT--TTTAGTAcattgctgaattatcctccaatctatagttttaggaaggacctggggaatggcaacatgcacatatttgtctaaaatgtgaac-ctttcatgttctgcttctgtctctttttgaaaatccttccaatttgccttttgcaaccag-ttagtggccttgccttctt-caccagaatgtgaattaattgaaaaagttcagaatatttgggctcaaaggtttcgacagttaagtcgaattttctgccaaaacgtgtaggatcttggagCCTGCTTTAGAAACAGAAGAACGAAATGTGTTTAG i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128367577 608 + 229590362 tttttttcttttggagatggagtcttgctctgtcacccaggctgtattgcagtggtaggatctcagctcactgcaacctccgcctcgcgggttcaagcgattcttttgcttcagcctcctgagtagccacctggctaatttttgta-ttttagtagagacagggtttcactatgttgg-caggctggtctcgaactcctgacctcaagtgatccacccacctcggcctcccaaagtgctgggattacaggcatgagctaccatacctggcTCTCAAACCATTTTAGGTAAGCAAAGACAGATTTGTCTGGCTT-------CACATTGCTGAATTATCCTCCAATCTATGTTTTTAGGAAGGACCTGGGGAATGGCAACATGGAGATATTTGGCTAAAATGTTAAC-CTTTCATGTTCTGCTTCAGTCTCTT-TTGAAAATCCTTccaatttgccttttgcaaccag-ttactgaccttgccttctt-caccagcatgtgaattaattgataaaggtcagaatatttgggctcaaaggtttcaacagttaagtcgaattttctgtcaaaccctgtagaatcttGGAGCCCGCTTTAGAAACAGAAGAGTGAAATGTATTTAC i rheMac3.chr1 I 20 C 0 s macFas5.chr1 124953060 608 - 227556264 tttttttcttttggagatggagtcttgctctgtcacccaggctgtattgcagtggcaggatctcagctcactgcaacctccgcctcccgggttcaagcgattcttttgcttcagcctcctgagtagccacctggctaatttttgta-ttttagtagagacagggtttcactatgttgg-caggctggtctcgaactcctgacctcaagtgatccacctacctcggcctcccaaagtgctgggattacaggcatgagctaccatacctggcTCTCAAACCATTTTAGGTAAGCAAAGACAGATTTGTCTGGCTT-------CAcattgctgaattatcctccaatctatgtttttaggaaggacctggggaatggcaacatggagatatttggctaaaatgttaac-ctttcatgttctgcttcagtctctt-ttgaaaatccttccaatttgccttttgcaaccag-ttactgaccttgccttctt-caccagcatgtgaattaattgataaaggtcagaatatttgggctcaaaggtttcaacagttaagtcaaattttctgtcaaaccctgtagaatcttggagCCTGCTTTAGAAACAGAAGAGTGAAATGTATTTAC i macFas5.chr1 I 19 C 0 s calJac3.chr21 50444946 609 - 50472720 tttttttttttttgagacacagtgtcactccatctcccaggctggattgcagtggcaggatctcggctcactgcaacttctccctcccgggttcaagtgattcttttgcttc------------agtcacccggcaaatttttgtatttttagtagctacggggtttcaccacgttggccaggctggtctcgaactcctgacctcaagtgatccacccacttcggcctcccaaagggctgagattacaggcatgagccaccacacctggTTCTCAAACCATTTTAAGCAAGCAAAGACACATTTGTCTGGCTTTTTTTAGTACAGTGCTGAATTATCCTCCAATCTACATTTTTAGGAAGGACCTGGGGAATGGCAACATGGAGTTATTTGGCCAAAATGCAGACATTTTCACGTTCTACTACTGTCTATTTTTGAAAATCCTTCCATTTTGCCTTTTGTATCCAGTTTAGTGGCCTTGCCTTCTTATACCAGCATGTGAATTAATTGATGAAGGTTAGAATATTTGGGCTCAAAGGTTTCAACAGTTAAGTCAAATTTTCTCCCAGACCCTATAGTATCTTGGCACTTGCATTAGAAACAGAAGGGGAAACTGTATTTAC i calJac3.chr21 I 3737 C 0 e ponAbe2.chrUn 11243442 0 + 72422247 C e papAnu2.chr1 98619895 1770 - 220367699 I a score=14924.000000 s hg38.chr1_KI270765v1_alt 65040 21 + 185285 CTTTAGATCAGGGAAGTCCTT s panTro4.chr1_AACZ03149435_random 173220 21 + 173505 CTTTAGATCAGGGAAGTCCtt i panTro4.chr1_AACZ03149435_random C 0 C 0 s rheMac3.chr1 128368185 21 + 229590362 ATTTAGACCATGGAAGTCTTT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 124953668 21 - 227556264 ATTTAGACCATGGAAGTCTTT i macFas5.chr1 C 0 C 0 s calJac3.chr21 50445555 21 - 50472720 ATTTAGATCAGGGAAGTCTTA i calJac3.chr21 C 0 C 0 e ponAbe2.chrUn 11243442 0 + 72422247 C e papAnu2.chr1 98619895 1770 - 220367699 I e nomLeu3.chr12 56456928 0 - 109391073 C a score=23227.000000 s hg38.chr1_KI270765v1_alt 65061 261 + 185285 TATT--TTTTtttatttattt-ttatttatttattttttttgagatgaagtgttgctctgttgcccaggctggagtgcagtcgcgcgatctcggctctctgcaagctccgcctcccgggttaacgccattctcctgcctcagcctcctgagtagctgggactacaggcgcccgccaccacgccccgctaattttttgtatttctagtagagatggggtttcaccgtgttagccaggatggtctccatcccctgatcttgtgatc s panTro4.chr1_AACZ03149435_random 173241 264 + 173505 tatttatttatttatttatttattatttatttattttttttgagatgaagtgttgctctgttgcccaggctggagtgcagtggcgcgatctcggctctctgcaagctccgcctcccgggttaacgccattctcctgcctcagcctcctgagtagctgggactacaggcgcccgccaccacgccccgctaattttttgtatttctagtagagatggggtttcaccgtgttagccaggatggtctccatcccctgaccttctgatc i panTro4.chr1_AACZ03149435_random C 0 N 0 e calJac3.chr21 50445576 0 - 50472720 C e rheMac3.chr1 128368206 0 + 229590362 C e ponAbe2.chrUn 11243442 0 + 72422247 C e papAnu2.chr1 98619895 1770 - 220367699 I e macFas5.chr1 124953689 0 - 227556264 C e nomLeu3.chr12 56456928 0 - 109391073 C a score=0.000000 s hg38.chr1_KI270765v1_alt 65322 57 + 185285 cgcccgcctccgcctcccaaagtgctaggattacaggcgtgagccaccgcgcccggc e calJac3.chr21 50445576 0 - 50472720 C e rheMac3.chr1 128368206 0 + 229590362 C e ponAbe2.chrUn 11243442 0 + 72422247 C e papAnu2.chr1 98619895 1770 - 220367699 I e macFas5.chr1 124953689 0 - 227556264 C e nomLeu3.chr12 56456928 0 - 109391073 C a score=8901.000000 s hg38.chr1_KI270765v1_alt 65379 18 + 185285 TATAATATTCTTAATTCA s rheMac3.chr1 128368206 18 + 229590362 TATAATATTCTTAATTCA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 124953689 18 - 227556264 TATAATATTCTTAATTCA i macFas5.chr1 C 0 C 0 s calJac3.chr21 50445576 18 - 50472720 TATAATAATTTTAATTCA i calJac3.chr21 C 0 C 0 e ponAbe2.chrUn 11243442 0 + 72422247 C e papAnu2.chr1 98619895 1770 - 220367699 I e nomLeu3.chr12 56456928 0 - 109391073 C a score=258716.000000 s hg38.chr1_KI270765v1_alt 65397 316 + 185285 CATTTTGGTGAAGCGGTGTACACAATGGTAGGCTCCCCTCTTCCTGTGGGTTTGGGTTTTACCTTGAAAGGGGCTGTCAGAACAGAAGTTTCAGGGAAGGGGCCAGAGCCCTGGGGACTTTCCTCAGGTGATGGTGATGGAAGAAGAGGCAAGGCAGGACAGGAAGGCTCAGGTAAGAAAGACTATGCAGGTGCAGGGGCAGGaggagaaggagcagttggaggcgaaagagacaaagcctcctcaatatttctcaattcagaaaacgtgtcagtttacctccttaagcttacttcctcaatggaggcaattttct s nomLeu3.chr12 56456928 316 - 109391073 CATTTTGGTGAAGCGGTGTACACAATGGTAGGCTCCCCTCTTCCTGTGGGTTTGAGTTTTACCTTGAAAGGGGCTGTCAGAGCAGAAGTTCCAGGCAAGGGGCCAGAGCCCTGAGGACTTTCCTCAGGTGATGGTGATGGAAGAAGAGGCAAGGCAGGACAGGAAGGCTCAGGTAAGGGAGACTATGCAGGTGCAGGGGCAGGaggagaaggagcagttggaggcgaaagagacaaagcctcctcaatatttctcagttcagaaaacgtgtcagtttacctccttaagcttacttcatcagtggaggcaattttct i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128368224 310 + 229590362 CATTTTGGTGAAGCGGTATACACAATGGTAGGCTCCCCTCTTCCTGTGG------GTTTTACCATGAAAGCGACTGTCAGAACAGAAGTTTCAGGGAAGAGGCCAGAGCCCTGGGGACTTTTCTCAGGTGATGGTGATGGAAGAAGAGGCAAGGCAGGACAGGAGGACTCAGGTAAGAAAGACTCTGCAGGTGCAGGGGCAGGAGGAGAAGGAGCAGTTGGAGGCGAAAGAGACAAAGCCTCCTCAATATTTCTCAATTCAGAAAACGTGTCAGTTTACCTCCCTCAGCTTACTTCCTCAATGGAGGCAATTTTCT i rheMac3.chr1 C 0 N 0 s macFas5.chr1 124953707 310 - 227556264 CATTTTGGTGAAGCGGTATACACAATGGTAGGCTCCCCTCTTCCTGTGG------GTTTTACCTGGAAAGGGGCTGTCAGAACAGAAGTTTCAGGGAAGGGGCCAGAGCCCTGGGGACTTTCCTCGGGTGATGGTGATggaagaagaggcaaggcaggacaggaaggctcaggtaagaaagactatgcaggcacaggggcaggaggagaaggagcagttggaggcgaaagagacaaagcctcctcaatatttctcaattcagaaaacgtgtcagtttacctccctcagcttacttcctcaatggaggcaattttct i macFas5.chr1 C 0 I 74 s calJac3.chr21 50445594 307 - 50472720 CATAATGGTAAAGCAGAATACACAGTGGTAGGCTTCCCTCTTCCTGTGG------GTGTTACCTTGAAAGGGGCTGTCAGAACAGAAGTTTCAGGGAAGGGGCCAGAGCCCTGGGGACTCTCCGCAGGTGATGGTGATGGAAGGAGAGGCAAGGCAGGACAGGAGGGCTCAGGTAAGGGAGACTATGCAGGTGCAGGGGCTGGAGGAGAAGGAGCAGATGGAGGCGAAAGAGACAAAGCCTCCTCAGTATTTCTCAATTCAGAAAAA--GTCTGCTGGCCTCCTTCAGTTTAC-TCCTCAATGgaggcaattttct i calJac3.chr21 C 0 C 0 e ponAbe2.chrUn 11243442 0 + 72422247 C e papAnu2.chr1 98619895 1770 - 220367699 I a score=-1190.000000 s hg38.chr1_KI270765v1_alt 65713 10 + 185285 tagttct-----------------ttt s nomLeu3.chr12 56457244 6 - 109391073 tagttc--------------------- i nomLeu3.chr12 C 0 C 0 s macFas5.chr1 124954091 27 - 227556264 tggttctaaaATGAAATTTCTCtctct i macFas5.chr1 I 74 C 0 s calJac3.chr21 50445901 10 - 50472720 cagttct-----------------ttt i calJac3.chr21 C 0 I 3974 e ponAbe2.chrUn 11243442 0 + 72422247 C e papAnu2.chr1 98619895 1770 - 220367699 I a score=26512.000000 s hg38.chr1_KI270765v1_alt 65723 93 + 185285 -ttttttttttttttttttttttgagatggagtctggctctattg-gcaggcgggagtgcagtggtgtgctctcggctcactgcaacctccgcct s nomLeu3.chr12 56457250 82 - 109391073 ------------tttttttttttgagatggagtctcgctctactg-gcagctgggagtgcagtggcgtgctctcggctggctgcaacctccgcct i nomLeu3.chr12 C 0 C 0 s macFas5.chr1 124954118 94 - 227556264 -ctctcttctctttttttttttttagacagagtctcactatgtcacccagactggagtgcagtggtgtgatctcggctcactgcactcaccgctt i macFas5.chr1 C 0 N 0 s calJac3.chr21 50449885 94 - 50472720 tttctttccttctttctttttttgaaacagagtctccctctgtcacccaggctgaagtgcagtggcatgatcctggcttaccacaaac-ccgcct i calJac3.chr21 I 3974 C 0 e ponAbe2.chrUn 11243442 0 + 72422247 C e papAnu2.chr1 98619895 1770 - 220367699 I a score=41259.000000 s hg38.chr1_KI270765v1_alt 65816 271 + 185285 cccggattcaagcaattttcctgcctcaggctcccgag-agctgggactacaggagcccgccatcaagcccggctaattttttgtatttttagttgagacggggtttcaccatgttggccaggat-gatcgccatctcttgacct--catgatccgcccgcctcggtctcccaaagtgctgggattacaggcctgagccaccgcgcccggcgcaattttctcagttcttttagaaattttagaaatttagaaatttggaaatttctaggtctcat s nomLeu3.chr12 56457332 254 - 109391073 cccggattcaatcaattctcctgcctcaggctcctgag-agttgggactgcaggagcccgccatcacgcctggctaa-gttttgtatttttagtagagacggggtttcaccacgttggccaggat-ggtctccatctcttgacct--caggatccgcccgcctcagcctctcaaagtgctgggattacaggcgtgagccaccacgcccggcgcaattttctcagttcttttagaaatttta----------------gaaatttctaggtctcat i nomLeu3.chr12 C 0 C 0 s calJac3.chr21 50449979 246 - 50472720 cccggcttcaagcaattcttgtgtctcagcctccagagtagctgggactacaggtgcgcaccaccatgcccggctaa-tttttgta-ttttagtagagtcagggttccattatgttggccaggctgggtctcgaacttctggcctactgtgatctgcccaccttggcctcccaaagtgctgggattatgggtgtgagccaccacacccagc---------------cTTT---AGATTTTC---------AGGCCAAAATAAACCTAAGTCTTGT i calJac3.chr21 C 0 I 107 e ponAbe2.chrUn 11243442 0 + 72422247 C e papAnu2.chr1 98619895 1770 - 220367699 I a score=3974.000000 s hg38.chr1_KI270765v1_alt 66087 77 + 185285 tgcaagtaagtctcccatttaatttgtcttgttctaaaaccaaatttctctCTCTCTCTCttttttttttttccttc s nomLeu3.chr12 56457586 63 - 109391073 tggaaataagtctcccatttaatttgtctggtcctaaaaccAAAtttctct---------tttttttttttt----- i nomLeu3.chr12 C 0 C 0 e calJac3.chr21 50450225 107 - 50472720 I e ponAbe2.chrUn 11243442 0 + 72422247 C e papAnu2.chr1 98619895 1770 - 220367699 I a score=28007.000000 s hg38.chr1_KI270765v1_alt 66164 126 + 185285 agacagagtctcactctgtcgcccaggctggagtgcagtggcgcggtcttggctcactacaacctctgcctcccaggttcaagcaattc-ttctgcctcagcctcctgagtagctgggattacagga s nomLeu3.chr12 56457649 127 - 109391073 agacagagtctcactctgtcgcccaggctggagtgcagtggcgctatcttggctcactgcaacctctgcctcccaggttcaagcagttctttctgcctcagcctcctgagtagctgggattgcaTGA i nomLeu3.chr12 C 0 N 0 s calJac3.chr21 50450332 125 - 50472720 agacagagtctccctttgtcacccaggctggagtacagtgatgtaactttgactcactacaacctctgcctcccgggttcaagcaatcc-tcctgcctcagcctcccgagtagct-ggattataggt i calJac3.chr21 I 107 C 0 e ponAbe2.chrUn 11243442 0 + 72422247 C e papAnu2.chr1 98619895 1770 - 220367699 I a score=13713.000000 s hg38.chr1_KI270765v1_alt 66290 206 + 185285 gcccgccaccatgcccggctaatttttgtatttttagtagagacagggtttcaccatgttggccaggctgatctcgaactcctgacctc-tgg----------------ctcccaaagcgctgggattacaggcgtgagccaccgtgcccagcGTAACCAAGATTATTGAGCCATTCTAATTTGTCAAAAGAGTCACATTGATTTTAAAAAAAATAACGTAAT s calJac3.chr21 50450457 222 - 50472720 gcatgccactatggccggctaatttttgtatttttagtagagatggggtttcaccatgttggccaggctagtctcaaactcctgacctcgtgatcccccacttctcggcctccaaaaatgctgggactacaggcatgagccactgcaccccgcATGACCAAGATTATTAAACCATTCTAATTTGTCAAACGAGTCACACTGATTTT-TAAAAAATAACTTAAT i calJac3.chr21 C 0 I 24 e ponAbe2.chrUn 11243442 0 + 72422247 C e papAnu2.chr1 98619895 1770 - 220367699 I a score=0.000000 s hg38.chr1_KI270765v1_alt 66496 1287 + 185285 GggccaggtacggtggctcacgcctgtaatcccagcactttgggaagccgtagggggcggatcacgaggtcaggagttcgagaccagcctgagcaacatggtgaaaccccgtgtctactaaaaatacaaaaattaaccgggcgtggtggtgtgtgcctgtaatcccagctactgaggaggctgaggctggagaattgcttgaacccaggaggcggaggttgcagtgagccaagattgcaccactgcactccagactaggtgacagagtgagactccgtttcaaaaTGAATACATAAATAAGCAAATAATAATGTAATGAACGTTTTCATCGTTTACATATTAAATAGAtgaaggggtggcctgcccctccatacttgtgggcgtttctcatcgggtggaaggagagacttgagaaaagagagagacacagagacaaagtatagagaaagaaaagtgagcccagggaaccggcgctcagcatacggaggacccgcgccggcaccagtctctgagttcccttagtatttattgatcattatcgggtgtttctcggagagggggatgtggcaggacaatagggtaatagtggagagagggtcaggaggaaaacatgtgaacaaatgtctctgcatcataaacaagctaaagaaaaaagtgctgtgcttttgatgtgcatatacagaaacatctcaatgcctgaaagagcagtattgctgcccacatgtcccacctccagccctaaaggggttttctcctatctcaatagatggaatatacaatcgggttttacaccgagacattccattgcccagggatgagcaggagacagatgccttcctcttttactaatcctcctcagcacagacactttacgggtgtcgggctgggagacggtcaggtatttcccttccggcgaggccatatttcagactatcacatggggagaaaccttggacaatacctggctttccttggcagaggtccctgtggccttctgcagtgtattatgtctctgggtacttgagattagggagtggtgatgactcttaacaagcatgctgccttcaagcatctgtttaacaaagcacatcctgcacagcccttaattcatttaactttgagtggacacagcacttgtttcagggagcacacggttgggggtagggttacagattaacagcatctcaaggcagaatttttcttagtacagaacaaaatggagtctcttatgtctccttctttctacatagacacagtgacagtctgatctctctttcttttccccac e calJac3.chr21 50450679 24 - 50472720 I e ponAbe2.chrUn 11243442 0 + 72422247 C e papAnu2.chr1 98619895 1770 - 220367699 I a score=1092.000000 s hg38.chr1_KI270765v1_alt 67783 2 + 185285 aA s nomLeu3.chr12 56836490 2 - 109391073 AA i nomLeu3.chr12 N 0 C 0 s macFas5.chr1 125106917 2 - 227556264 AA i macFas5.chr1 N 0 C 0 s chlSab2.chr20_KE148049v1_random 200119 2 + 1557941 AA i chlSab2.chr20_KE148049v1_random N 0 C 0 e calJac3.chr21 50450679 24 - 50472720 I e ponAbe2.chrUn 11243442 0 + 72422247 C e papAnu2.chr1 98619895 1770 - 220367699 I a score=433118.000000 s hg38.chr1_KI270765v1_alt 67785 614 + 185285 TACTTACACTATTTAAATTGTTCAAAAGCATCAAAGATTCCTCTCTGCTGTCAACTTCATTCCATTTATTTTATTGTACCAAACTATCAAGACCATTAATTTAATCTACTGCTAAATCTATTATTTTTTTCATGTTAGAAATTCAACCAGAAAATTTCTCCCTAATGAAACCTCACATTTCAAGCATAAGTAggctgggtgaggtggc-tcacacctgtaatcccagcactttgggaggccaagacaggtgcatcacttggggtcaggagcttgagaccagcctgacaaacatggtgaaaccccgtctctactaaaaatataaaaattagctgtgtgtggtggcatgcgcctgtaatcccagctactctggaggctgaggcagggaaatagcttcaacctgggaggcagagcttgcagtgagctgagattgcaccacttcagtctagcctgggctacagagcaagactctgtctcaaaaacaaataaataagca------taagtagtaaaaaaaa--------------aaaaaaaaaaaaaAAGATAAAAAATAAGGCGcagggtcttgctctgttatccaggcttgagtgcagcggggctatcatagctgaccagcttggaacttctgggct s nomLeu3.chr12 56836492 631 - 109391073 TATTTACATTATTTAAATTGTTCAAAAGCATCAAAGATTCCTCTCTA---TCAACTTCATTTCATTTATTTTATTGTACCAAACTATCAAGACCATTAATTTAATCTACAGCTAAATCTATTATTTTTT-CATGTTAGAAATTCCACAAGAAAATTTTTCCCTAATGAAACCTCACATTTCAAGCATAAGTAggctgggtgaggtggcctcacacctgtaatctcagcaccttgggacgccaagacaggtgcataacttgaggtcaggagtttgagaccagcctggaaaacatggtgaaaccctgtctctactaaaactataaaaattagccgggcatggtggcatgcgcctgtaatcccagctactctggaggctgaggcagggaactagcttcaacctgggaggcggagcttgcagtgagctaagatcgcactactgcactctagcctgggctacagagcaagactctgcctcaaaaataaataaataaataaataaataaataaataaataaataaGCGTAAGTAGTAAAAAAGTAAAATGAAATAAAAAATAAGGCacagtgtcttgctctgttattcaggctagagtgcagcggggcaatcatagcagaccaacttggaacttctgggct i nomLeu3.chr12 C 0 C 0 s macFas5.chr1 125106919 608 - 227556264 TATTTACATTATTTAAATTGTTCAAAAGCATCAAAGATTCTTCTCTGCTATCAACTTCATTTCATTTATTTTATTGTACCAAACTATCAAGACCATTAATTTAATCTGCAGCTAAATCTATTATTTTTT-CATGTTAAAAATTCAACAAGAAAATTTTTCCCTAATGAAACTTCATATTTCAAGTATAAGTAggctgggcgaggtggc-tcacacctgtaatcccagcactttgggaggccgagacaggtgcataacttgaggtcaggagtttgagaccagcctggcaaacatggtgaaaccccatctctactaaaactataaaaattagctgggcatgatggcgtgcacctgtaatcccagttactctggaggctgaggaagggaaatagcttcaacctgggaggcggagcttgcagtgatctgagatcacaccactgcactccagcctgggccacagagcaagactctgtctcaaaagtaaataaataaaTAAGCA--TAAGTAG-----------------------TAAAAAACAAAATAAAATGAAAAATAAGGCacagtgtcttcctctgttatccaggctagaatgcagaagggcaatcataggagaccaacttggaacttctgtgct i macFas5.chr1 C 0 C 0 s chlSab2.chr20_KE148049v1_random 200121 608 + 1557941 TATTTACATTATTTAAATTGTTCAAAAGCATCAAAGATTCCTCTCTGCTATCAACTTCATTTCATTTATTTTATTGTACCAAACTAGCAAGACCATTAATTTAATCTGCAGCTAAATCTATTATTTTTT-CATGTTAGAAATTCAACAAGAAAATTTTTCCCTAATGAAACCTCATATTTCAAGTATAAATAggctgggcgaggtggc-tcacacctgtaatcccagcactttgggaggccgagacaggtgcatcacttgaggtcaggagtttgagaccagcctggcaaacatggtgaaaccccatctctactaaaactataaaaattagctgggcgtgatggcctgcgcctataatcccagctactctggaggctgaggcagggaaatagcttcaacctgggaggcggagcttgcagtgatctgagatcccaccactgcactccagcctgggccacagagcaagactctgtctcaaaagtaaataaataaataagca--taagtag-----------------------taaaaaacaaaataaaataaaaaataaGGCacagtgtcttcctctgttatccatgctagaatgcagaagggcaatcataggagaccaacttggaacttctgtgct i chlSab2.chr20_KE148049v1_random C 0 C 0 s calJac3.chr21 50450703 589 - 50472720 TATTTACATTATTTAAATTGTTCAAAAGCATCAA--ATTCCTCTCTGCTATCAACTTTATTTC-----TTTTATTGTACCAAACTCTCAAGACCATTAATTTAATTTACTGCTAAATCTATTATTTTTT-CATGTTAGAAATTCAACAAGAAAATTTTCCCCTAATGAAACATCACAGTTAAAGCGTAAATATgctgggcgaggtggc-tcgtgcctataatcccagccttttggggggcagagccaggcgtatcatttgaggtcaggagtttgagaccagcctagcaaatatggtgaaaccttttctctactaaaaatataaaagttagctgaacatggtggcatgtgcctataaccccagctactctggagtgtgaggcaggaacatggcttgaatctggga-gctgaacttg--gtgaactgagatcatgcca-tgcactgtagcct-ggctacagagcaaga--ctgtctcaaaa-taaataaataataaaGCA--TAAGTAG-----------------------TAAA----GTAATAATAATAATAATAATGCacaggctcttcctctgttatctcagctagagtacagccttgcaatcatagctgaccaacctgggacctcaaggct i calJac3.chr21 I 24 I 316 e ponAbe2.chrUn 11243442 0 + 72422247 C e papAnu2.chr1 98619895 1770 - 220367699 I a score=181541.000000 s hg38.chr1_KI270765v1_alt 68399 381 + 185285 caggcaatcctcctggctcaacttgccTTGTAtttttttagagatggggtcttgccctgttgcccaggctggtctccaactgctggcctaaagcaatccttctgcctcagcctgttgagttgctgggagtacaggtgcAAGACATGCAGCCTAGCATTGTAGTAAAACAATTTTCAACAAATTCTTAATTTTCTTTCTTTTTCTTTttcttttctttctttcttttt--tttttttttgagttgggagtctcactctgtcactcaggctggagggcagtggcgcaatcatagttcactgcagcctgcctcagtctcccaagtagctgagattacagtcatgcattatcatgcctggccaactttaaaaaa-ttagctaatactt s nomLeu3.chr12 56837123 359 - 109391073 caggcaatcctcctggttcagcttgccTTGCAtttttttagagatggggtcttgccctgttgcccagcctggtctccaactgctggcctaaagcaatccttccgcctcagcctgttgatttgctgggagtacaggcacaagacaTGCAGCCTAGCATTGTAGTAAAACAATTTTCAACAAATTCTTAAttttctttctttttcttttt-------------------------tttttgagttgggagtcttactctgtcacccaggctggagggcagtggtgcaatcatagttcactgcagcctgcctcagtctccctagtagctaagattacagtcatgcattatcacgcccggccaactttaaaaaaattagctaatactt i nomLeu3.chr12 C 0 C 0 s macFas5.chr1 125107527 370 - 227556264 gaggcaatcctcctggctcagcttgccttgtatttttttagagatgaggtcttgccctgttgcccaggctggtctccaacttctggcctaaagcaatccttccacctcagcctgttgagtttctgggagtacaggcacaagacaTGCAGCCTAGCATTGTAGTAAAACAGCTTTCAACAAATTCTTAATTTTCTTTCtttttcttttt-----------attatttc--tttttttttgagttgagagtcttactctgtcacccaggctggagggcagtggtgcaatcatagttcactgcagcctgcctcagtctccctagtagctgagattacagtcatgcattatcatgcccggccaacttttaaaaa-ttagctaatactt i macFas5.chr1 C 0 C 0 s chlSab2.chr20_KE148049v1_random 200729 371 + 1557941 caggcaatcctcctagctcagcttgccttgtatttttttagagacgaggtcttgcactgttgcccaggctggtctccaacttctggcctaaagcaatccttccacctcagcctgttgagtttctgggagtacaggcacaagacaTGCAGCCTAGCATTGTAGTAAAACAGCTTTCAACAAATTCTTAATTTTCTTTCTTTTTCTTTTt-----------tttttttttgtttttttttgagttgggagtcttactctgtcacccaggctggagggcagtggtgcaatcacagttcactgcag-ctgcctcagcctctctagtagctgagattacagtcatgcattatcatgcccggccaactttaaaata-ttaactaacactt i chlSab2.chr20_KE148049v1_random C 0 C 0 e calJac3.chr21 50451292 316 - 50472720 I e ponAbe2.chrUn 11243442 0 + 72422247 C e papAnu2.chr1 98619895 1770 - 220367699 I a score=55687.000000 s hg38.chr1_KI270765v1_alt 68780 64 + 185285 aaaaatttgtagagacaggggtttcactatattgcc-aggctggtatccaactcctaacctcaat s nomLeu3.chr12 56837482 65 - 109391073 aaaaatttgtagagacaggggtttcactatgttgcccaggccggtcttcaactcctaacctcaat i nomLeu3.chr12 C 0 C 0 s macFas5.chr1 125107897 65 - 227556264 aaaaatttgtagagacaggggtttcactatgttgcccaggctggtctccaactcctaacctcaac i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98621665 65 - 220367699 aaaaatttgtagagacaggggtttcactatgttgcccaggctggtctccaactcctaacctcaac i papAnu2.chr1 I 1770 C 0 s chlSab2.chr20_KE148049v1_random 201100 65 + 1557941 aaaaatttgtagagacaggggtttcactatgtttcccaggctggtctccaactcctaacctcaac i chlSab2.chr20_KE148049v1_random C 0 C 0 e calJac3.chr21 50451292 316 - 50472720 I e ponAbe2.chrUn 11243442 0 + 72422247 C a score=168322.000000 s hg38.chr1_KI270765v1_alt 68844 122 + 185285 tgatcctccctcctcagcctcctaaagtgctgggattgcagatatgagccaccatacctggcTTAATTTTCTTATTTTAATTTTATATAAGTGATTATTATTGTTCCTAAGATAATTGGGGC s nomLeu3.chr12 56837547 122 - 109391073 tgatcctccctcctcagcctcctaaagtgctgggattgcagctatgagccaccatacctggcTTAATTTTCTTATTTTAATTTTATGTAAGTGATTATTATTGTTCCTAAGATAATTGGGGC i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128505742 122 + 229590362 TgatcctccctcctcagcctcctaaagtgctgggattgcagatatgagccaccatacctggcttaattttcttattttaattttatataaGTGATTATCATTGTTCCTAAGATAATTGGGGC i rheMac3.chr1 N 0 N 0 s macFas5.chr1 125107962 122 - 227556264 tgatcctccctcctcagcctcctaaagtgctgggattgcagatatgagtcaccatacctggcTTAATTTTCTTATTTTAATTTTATATAAGTGATTATCATTGTTCCTAAGATAATTGGGGC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98621730 122 - 220367699 tgatcctccctcctcagcctcctgaagtgctgggattgcagatatgagtcaccatacctggcttaattttcttattttaattttatataagtgaTTATTATTGTTCCTAAGATAATTGGGGC i papAnu2.chr1 C 0 C 0 s chlSab2.chr20_KE148049v1_random 201165 122 + 1557941 tgatcctccctcctcagcctcctaaagtgctgggattgcagatatgagtcaccatacctggcTTAATTTTCTTATTTTAATTTTATATAAGTGATTATTATTGTTCCTAAGATAATTGGGGC i chlSab2.chr20_KE148049v1_random C 0 C 0 e calJac3.chr21 50451292 316 - 50472720 I e ponAbe2.chrUn 11243442 0 + 72422247 C a score=490103.000000 s hg38.chr1_KI270765v1_alt 68966 387 + 185285 AGTGACTCCTTTAAAATTTTAGAGACCTAATTTGTCTATTCACTTCACTGAAAGAGTATGCCAGTTTGCTTCATGAGAAAATATCCTATATTAATAAAGCAAGAAAATTCCTTCCACCAAACTAGGGGGCATTCTAAAGAAACGAATTGTGCTAAGTAACATCACTTAAGGTGAAAACAGAGGCAATGGTATCTATTAACAATGTTTATCAGTGAAGGAAATAAACTGAAAATGTTAACATCATTAAATCCTCAGAGGGCCTTCGTTGCTGAAAA-TCTGAGTAATATTGTGATACCCTTTTGAGTCCGGCAGGACATTCTCTTTCCAGGGCATATGACAGTGGGCGAATAATTTCTTTTCATTCATTTTCATTAAGGGCTGAACTTC s nomLeu3.chr12 56837669 388 - 109391073 AGTGACTCCTTTAAAATTTTAGAGACCTAATTTGTCTATTCACTTCACTGAAAGAGTATGCCAATTTGTTTCATGAGAAAATATCCTATATTCATAAAGCAGGAAAATTCCTTCTACCAAACTAGGGGGCATTCTAAAGAAACAAATTTTGCTAAGTAACATCACTTAAGGTGAAAACAGAGGCAATGGTATCTATTAACAATGTTTATCAGTGAAGGAAATAAACTGAAAATATTAACATCATTAGATCCTTGGAGGGCCTTCATTGCTGAAAAATCTGAGTAATATTGTGATACCCTTTTGAGTCCGGCAGGACATTCTCTTTCCAGGGCATATAACAGTGGGTGAATAATTTCTTTTCATTCATTTTCATTAAGGGCTGAACTTC i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128370828 387 + 229590362 AGTGACTCCTTTAAAATTTCAGAGACCTAATTTGTCTATTCACTTCACTGAAAGAGTATGCCAATTTGTTTCATGAGACAATATCCTATATTTATAAAGCAGGAAAATTCCTTCCACCAAACTAGGGGGCATTCTAAAGAAACGAATTGTACTAAGTAACATCACTTAAGGTGAAAACAGAGGCAATGGTATCTATTAACAATGTTTATCAGTGAAGGAAACAAACTGAAAATATTAACATCATTAGATCCTTGGAGGGCCTTCATCGCTGAAAA-TCTGAGTGATATTGTGATACCCTTTTGAGTCTGGCAGGACATTCTCTTTCCAGGGCATAGAACAGTGGGTGAGTAATTTCTTTTCATTCATTTTCATTAAGGGATGAACTTC i rheMac3.chr1 N 0 C 0 s macFas5.chr1 125108084 387 - 227556264 AGTGACTCCTTTAATATTTTAGAGACCTAATTTGTCTATTCACTTCACTGAAAGAGTATGACAGTTTGTTTCATGAGAAAATATCCTATATTTATAAAGCAGGAGAATTCCTTCCACCAAACTAGGGAGCATTATAAAGAAACGAACTGCGCTAAGTATCATCACTTAAGGTGAAAATAGAGGCAATGGTATCTATTAACAATGTTTATCAGTGAAGGAAATAAACTGAAAATATTAGCATCATTAGATCCTTGGAGGGCCTTCATTGCTGAAAA-TCTGAGTGATTTTGTGATACCTTTTTGAATCCGGCAGGACATTCTCTTTCCAGGGCATAGAACAGTGGGTGAATAACTTCTTTTCATTTATTTCCATTAAGGAATGAACTTC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98621852 377 - 220367699 AGTGACTCCTTTAAAATTTTAGAGACCTAATTTGTCTATTCACTTCACTGAAAGAGTATGACAGTTTGTTTCATGAGAAAATATCCTAtatttataaagaaggaaaattccTTCCACCAAACTAGGGGGCATTCTAAAGAAATGAATTGTGCTAAG----------TAAGGTGAAAACAGAGGCAATGGTATCTATTAACAATGTTCATCAGTGAAggaaacaaactgaaaatattaGCATCATTAGATCCTTGGAGGGCCTTCATTGCTGAAAA-TCTGAGTGATTTTGTGATACCCTTTTGAGTCCGGCAAGACATTCTCTTTCCAGGGCATAGAACAGTGGGtgaataatttcttttcattcattttcattaaggGATGAACTTC i papAnu2.chr1 C 0 C 0 s chlSab2.chr20_KE148049v1_random 201287 387 + 1557941 AGTGACTCCTTTAAAATTTTAAAGACCTAATTTGTCTATTCACTTCACTGAAAGAGTATGACAGTTTGTTTCATGAGAAAATATCCTATATTTATAAAGGAGGAAAATTCCTTCCACCAAACTAGGGAGCATTATAAAGAAACGAATTGTGCTAAGTAACATCACTTAAGGTGAAAATACAGGCAATGGTATCTATTAACAATGTTTATCAGTGAAGGAAATAAACTGAAAATATTAACATCATTAGATCCTTGGAGGGCCTTCATCGCTGAAAA-TCTGAGTAATATTGTGATACCCTTTTGAGTTGGGCAGGAAATTCTCTTTCCAGGGCATAGAACAGTGGGTGAATAACTTCTTTTCATTTATTTTCATTAAGGAATGAACTTC i chlSab2.chr20_KE148049v1_random C 0 C 0 e calJac3.chr21 50451292 316 - 50472720 I e ponAbe2.chrUn 11243442 0 + 72422247 C a score=98218.000000 s hg38.chr1_KI270765v1_alt 69353 42 + 185285 CTTAATGTTCTGGAGATTATTAAATTTGATTTGTATAGTTGT s panTro4.chr1_GL389091_random 81541 42 + 179278 CTTAATGTTCTGGAGATTATTAAATTTGATTTGTATAGTTGT i panTro4.chr1_GL389091_random N 0 C 0 s ponAbe2.chrUn 11243442 42 + 72422247 CTTAATGTTCTGGAGATTATTAAATTTGATTTGTAGAGTTGT i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56838057 42 - 109391073 CTTAATGTTCTGGAAATTATTAAATTTGATTTGTATAGTTGT i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128371215 42 + 229590362 CTTAATGTTCTGGAGATTACTACGTTTGATTTGTATAGTTGT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 125108471 42 - 227556264 CTTAATGTTCTGGAGATTATTACATTTGATTTGTATCATTGT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98622229 42 - 220367699 CTTAATGTTCTGGAGATTATTACATTTGATTTGTATAGTTGT i papAnu2.chr1 C 0 I 318 s chlSab2.chr20_KE148049v1_random 201674 42 + 1557941 CTTAATGTTCTGGAGATTATTACATTTGATTTGTATCATTGT i chlSab2.chr20_KE148049v1_random C 0 C 0 e calJac3.chr21 50451292 316 - 50472720 I a score=650564.000000 s hg38.chr1_KI270765v1_alt 69395 280 + 185285 GAAAAGTGCTCATATTGCTGATTCCATTGCTTACATATGATCATATAAGTCTTTTCTCTCCTTTCTGTAGTGTGGTTTAAACTTAATCCTTAAAGGACATGTATTTGAATTTTTCAGCTGGTTAGAAACCTGAATATACCAATCAAAGAAAACTGCTCCTTACATGCTACAGATTTAGTGTTCTTCCTGTGCTAAGATGTCTTTTAGATATAGTAAATTTGTTAAAGCCAAGAGCTCCTATGGAACAAAGTTGGGTGG-------------------------GA-GGGGGACATTGAGTAGTAAG s panTro4.chr1_GL389091_random 81583 281 + 179278 GAAAAGTGCTCATATTGCTGATTCCATTGCTTATATGTGATCATATAAATCTTTTATCTCCTTTCTGTAGTGTGGTTTAAATTTAATCCTTAAAGGACATGTATTTGAATTTTTCAGCTGGTTAGAAATCTGAATATACCAATCAAAGAAAACTGCTCCTTAAATGCTACAGATTTAGTTTTCTTCCTGTACTAAGATATCTTTTAGATATAGTAAATTTGTTAAAGCCAAGAGCTCCTATGGAACGAAGTTGGATGG-------------------------GAGGGGGGACGTGGAGTAGTAAG i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 11243484 269 + 72422247 GAAAAGTGCTCATATTGCTGATTCCATTGCTTATATGTGATCATACAAATCTTTTCTCTCCTTTCTGTAGTGTGGTTTAAACTTAATCCTTAAAGGACACGTATTTGAATTTTTCAGATGGTTAGAAACCTGAATATACCAATCAAAGAAAACTGCTCCTTAAATGCTACAGATTTAGTTTCCTTCCTGTACTAAGATGTCTTTTAGATATAGTAAATTTTTTAAAGCCAAGAGCTCCTATGGAACGAAGTT-------------------------------------GGACATTGAGTAGTAAG i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56838099 281 - 109391073 GAAAAGTGCTCATATTGCTGATTCCATTGCTTATATGTGATCATATAAATCTTTTCTCTCCTTTCTGTAGTGTGGTTTAAACTTAATCCTTAAAGGACATGTATTTGAATTTTTCAGCTGGTTAAAAACCTGAATATACCAATCAAAGAAAACTGCTCCTTACATGCCACAGATTTAGTTTTCTTCCTGTACTAAGATGTCTTTTAGATATAGTAAATTTGTTAAAGCCAAGAGCTCCTACGGAATGAAGTTGGATGG-------------------------GAGGGAAGACATGGAGTAGTAAG i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128371257 281 + 229590362 GAAAAGTGCTCATATTGCTGATTCCATTGCTTATATGTGATCATATAAATCTTTTCTCTCCTTTCTGTAGTGTGGTTTAAACTTAACCTTTAAAGGACATGTATTTGAATTTTTCAGCTGGTTAGAAACCTGAATATACCAATCAAAGAAAACTTCTCCTTACATGCTACAGATTTAGTTTTCCTCCTGGACTAAGATGTCTTTTAGATATAGTAAATTTGTTAAAGCCAAGAACTCCTATGGAATGAAGTTGGGTGG-------------------------GAGGGGGGACATTGAGTAGTAAG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 125108513 306 - 227556264 GAAAAGTGCTCATATTGCTGATTCTATTGCTTATATGTGATCATATAAATCTTTTCTCTCCTTTCTGTAGTGTGGTTTAAACTTAATATTTAAAGGACATGTATTTGAATTTTTCAGCTGGTTAGAAACCTGAATATACCAATCAAAGAAAACTGCTCCTTATATGCTACAGATTTAGTTTTTTTCCTGGACTAAGATGTCTTTTAGATATAGCAAATTTGTTAAAGCCAAGAGCTCCTACGGAATGAAGTTTGGTGGTGAGGGGGCTGGAGATTGAGTAGTAAGGGGGGGACATTGagtagtaag i macFas5.chr1 C 0 I 30 s papAnu2.chr1 98622589 281 - 220367699 gaaaagtgctcaTATTGCTGATTCCATTGCTTATATGTGATCATATaaatcttttctctcctttctgtaGTGTGGTTCAAACTTAATCCTTAAAGGACATGTATTTGAATTTTTCAGCTGGTTAGAAACCTGAATATACCAATCAAGGAAAACTGCTCCTTACATGCTACAGATTTAGTTTTCTTCCTGGACTAAGATGTCTTTTAGATATAGTAAATTTGTCAAAGCCAGGAGCTCCTATGGAACGAAGTTGGGTGG-------------------------GAGGGGGGACATTGAGTAGTAAG i papAnu2.chr1 I 318 C 0 s chlSab2.chr20_KE148049v1_random 201716 305 + 1557941 GAAAACTGCTCATATTGCTGATTCTATTGCTTATATGTGATCATATAAATATTTTCTCTCCTTTCTGTAGTGTGGTTTAAACTTAATATTTAAAGGACATGTATTTGAATTTTTCAGCTGGTTAGAAACCTGAATATACCAATCAAAGAAAACTGCTCCTTGTATGCTACAGATTTAGTTTTTTTCCTGGACTAAGATGTCTTTTAGATATAGTAAATTCGTTAAAGCCAAGAGCTCCTACGGAACGAAGTTTGGTGGTGGGGGGGCTGGACATTGAGTAGT-AAGGGGGGACATTGagtagtaag i chlSab2.chr20_KE148049v1_random C 0 I 20 e calJac3.chr21 50451292 316 - 50472720 I a score=5486.000000 s hg38.chr1_KI270765v1_alt 69675 6 + 185285 ATCACT s panTro4.chr1_GL389091_random 81864 6 + 179278 ATCACT i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 11243753 6 + 72422247 ATAACT i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56838380 6 - 109391073 ATCACT i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128371538 6 + 229590362 ATCACT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 125108849 6 - 227556264 aAGGAC i macFas5.chr1 I 30 C 0 s papAnu2.chr1 98622870 6 - 220367699 ATCACT i papAnu2.chr1 C 0 C 0 e calJac3.chr21 50451292 316 - 50472720 I e chlSab2.chr20_KE148049v1_random 202021 20 + 1557941 I a score=630299.000000 s hg38.chr1_KI270765v1_alt 69681 293 + 185285 CTTGTAATAGAGATGCCACTCTTGCAGATATTGACAACTATTGGGCCTGTAAAATTTTTAACAAACATTGGAAAGACAAGATATGAACAACTCATCATTGCTGCAGTCTCAAATATCAGGAAATACCATTATTCTCAGGACAATAAATAGACAAT-AAAAAAGA--CTCACAGAGCAGCTTAGCTGT----------------CATGTATTACCAAACAGGGACTGGATCCTTGTCAACACCACCCAACAGAGA-TTGTCCCCAGAAATTCACTTCATAACATCAAAACCAAAAACCCACACTGATGGC-------------ACAA s panTro4.chr1_GL389091_random 81870 295 + 179278 CTTGTAACAGGGATGCCACTCTTGCAGATATTGACAACTATTGGGCCCATAAAATTTTTACCAAACATTGGAAAGACAAGATATGAACAACTTATCATTGCTACAGTCTCAAATATCAGGAAATACCATTATTCTCAGGACAATAAATAGACAAT-AAAAAAAAGTCTCACAGAGCAGATTAGCTGT----------------CATGTATTACCAAACAGGGACTGGATCCTTGTCAACACCACCCAACAGAAA-TTGTCCATAGAAATTCACTTCATAACATCAAAACCAAAATCCCACACTGATGGC-------------AAAA i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 11243759 293 + 72422247 CTTGTAACAGGGATGCCACTCTTGCAGATATTCACAACTATTGGGCCCATAAAATTTTTACCAAACATTGGAAAGACAAGATATGAACAACTTATCATTGCTGCAGTCTCAAATATCAGGAAATACCATTATTCTCAGGACAATAAATAGACAAT-AAAAAAGA--CTCTCAGAGAAGATTAGCTGT----------------CATGTATTACCAAACAGGGACTGGATCCTTGTCAACACCACCCAACAGAAA-TTGTCCATAGAAATTCACTTCATAACATCAAAACCAAAAACCCACACTGATGGC-------------AAAA i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56838386 284 - 109391073 CTCGTAACAGGGATGCCACTCTTGCAGATATTGACAACTATTGGGCCCATAAAACTTTTACCAAACATTGGAAAGACAAGATATGAACAACTTATCATTGCTGCAGTCTCAAATATCAGGAAATACCATTATTCTCAGGACAATAAATAGACAAT-AAAAAAGA--CTCACAGACCAGATTAGCTGT-------------------------CCAAACAGGGACTGGATCCTTATCAACATGACCCAACAGAGA-TTGTCCCCAGAAATTCACTTCATAACATCAAAACCAAAAACCCACACTGATGGC-------------AAAA i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128371544 311 + 229590362 CTTGAAACAGTGATGCCACTCTTGCCGATATTGACTACTATTGGGCCCATAACATTTTTACTAAACATTGGAAAGACAAGATATGAACAACTTCTCATTGCTGCAGTCTCAAATATCAGGAAATACCATTATTCTCAGGACAATGAATAGACAATAAAAAAAGA--CTCACAGACCAGATTAGCTGTCCAGACAGGGACTGAATCCTTATTACCAAACAGGGACTGGATCCTTGTCAACAACACCCATCAGAGA-TTGTCCCCAGAAATTCACTTCATAACATCAAAACCAAAAACCCACACTGATGGC------------AAAAA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 125108855 295 - 227556264 ATTGTAATAGAGATGCC-CTCTTGCAGATATTGACAATTACTGGGCCCATAAAATTGTTACCAAACATTGGAAAGACAAGATATGAACAACTTATCATTGCTGCA-TCTCAAATATCAGGAAATACCATTATTCTCAGGACAATAAATAGACAAC-AAAAAAGA--CTCATAGACCACATTAGCTGT-------------------------CCAAACAGGGACTGGATCCTTGTCAACACGACGCAACAGAGA-TTGTCCCCAGAAATTCACTTCATAACATCAAAACAAAAAACCCACACTGATGGCaaaaaaaaaaaaaaaaa i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98622876 293 - 220367699 CTTGTAATAGAGATGCCACTCTTGC-GATATTGACAACTACTGGGCTCATAAAATTTTTACCAGACATTTGAAAGACAAGATACGAACAACTTATCATTGCTGCAGTCTCAAATATCAGGAAATACCATTATTCTCAGGACAATACATAGACAAT-AAAAGAGA--CTCACAGAGCAGATTAGCTGT----------------CATGTATCACCAAACAGGGACTGGATCCTTGTCAACAACACCCAACAGAGATTTGTCCCCAGAAATTCACTCCATAAcatcaaaaccaaaaacccacactaatggc-------------aaaa i papAnu2.chr1 C 0 C 0 s chlSab2.chr20_KE148049v1_random 202041 283 + 1557941 ATTGTAATAGAGATGCCACTCTTGCAGATATTGACAATTACTGGGCCCATAAAATTGTTACCAAACATTGGAAAGACAAGATATGAACAACTTATCATTGCTGCA-TCTCAAATATCAGGAAATACCATTATTCTCAGGACAATAAATAGACAAC-AAAAAAGA--CTCACGGACCACATTAGCTGT-------------------------CCAGACAGGGACTGGATCCTTGTCAACACGACGCAACAGAGA-TTTTCCCCGGAAATTCACTTCATAATATCAAAACCAAAAACCCACACTGATGGC-------------aaaa i chlSab2.chr20_KE148049v1_random I 20 I 27 e calJac3.chr21 50451292 316 - 50472720 I a score=16438.000000 s hg38.chr1_KI270765v1_alt 69974 41 + 185285 TATAATGATGCAAAAATgagagagagagagagacagagaga s panTro4.chr1_GL389091_random 82165 17 + 179278 AATAATGATGCAAAAAT------------------------ i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 11244052 31 + 72422247 AATAATGATGCAAAAATgagagagagagaga---------- i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56838670 33 - 109391073 AATAATGATGCAATAATgagaatgagagagaga-------- i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128371855 17 + 229590362 AATAATGATGCAAACAT------------------------ i rheMac3.chr1 C 0 C 0 s macFas5.chr1 125109150 23 - 227556264 aaaaaaGATGCAAAAATgagaga------------------ i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98623169 17 - 220367699 aataatgatgcaataat------------------------ i papAnu2.chr1 C 0 C 0 e calJac3.chr21 50451292 316 - 50472720 I e chlSab2.chr20_KE148049v1_random 202324 27 + 1557941 I a score=841559.000000 s hg38.chr1_KI270765v1_alt 70015 515 + 185285 gagagagagagagagggagagagagagagaCCTGTCCTACAGCCATACTTAGTGGGTAAAAGCCAAAGAGCTCAATTTCTGCTCATGATACTTAATAGAACAGAGGGAACATGAGCCAATAGCTCAATGGGTTCAGATCTGCACCAAGTGCCTGTTGGATGCAGA--------ATTCTACTGTCTCCAATAATATGTCTCAGATGGACTAGtttttttgttttttgtttgttttgtttt--------------tgttttttatttttt-gtttttgagagaga----------gtctccctctgtcgcccaggctggggtgcaacggcacgatctcggctcacggcaacctccgcctcccgggttcaagcgattctcctgcctcagcctcccaagtagttgggactacagacgcacaccaccacgtctggctatttttttgttttgttttgt-------tttgt-tttgtatttttaacagagacagagtttcgccatgttggtcaggctggtctcgaactcctgacctcagttgatcAGAAGTAGGTGAGGTCAG s panTro4.chr1_GL389091_random 82182 495 + 179278 ------------------GAAAGAGAGAGACCTGTCCTATAGCCATACTTAGTGGGTAAAAGCCAAAGAGCTCAATTTCTGCTTGTGATACTTAATAGAACAGATGGAACATGAGCCAATAACTCAGTGGGTTCAGATATGCACCAAGCACCTGTTGGATGCAGG--------ATTCTACTGTCTCCAATAGTATGTCTCAGATGGACTAGTTTTT---Tttgttgttgttgttgttgt--------------tgttt----tgtttt-g-ttctgggacaga----------gtctcactctgttgcccaggctgggatgcaatggcatgatctcggctgactgcaacctctgcctcctgggttcaagcgattcttctgcctcagcctccctagtagttgggattacagacacataccaccacgtccagc--tttttttgctttcgtgtgtgtgtgtgtttgtgtgtgtatttttagtagagatggagtttcaccattttggtcaggctggtctcgaactcctgatctcagttgatcAGAAGTAGGTGAGGTCAG i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 11244083 477 + 72422247 ------------------gagagagagagaCCTGTCCTATAGCCATACTTAGTGGGTAAAAGCCAAAGAGCTCAATTTCTGCTCATGATACTTAATAGAACAGACGGAACATGAGCCAATAACTCAGTGGGTTCAGATCTGCACCAAGTGCCTGTTGGATGCAGG--------ACTCTACTGTCTCCAATAATATGTCTCAGATGGACTAGTTTtt-----------tgttgttgttgt--------------tgttt----tgtttt-g-ttttgggacagt----------gtctcgctctgtcacccaggctggggtgcaatggcatgatctcagctcactgcaacctccacctcctgggttcaagcgattctcctgcctcagcctccccagtagttgggattacagacacacactaccacatccagc---ttttatgctttttttt---------tttttttttgtatttttggtagagacggagtttcaccatgttggtcaggctggtctcaaactcctgacctcagttgatcAGAAGTAGGTGAGGTCAG i ponAbe2.chrUn C 0 I 2 s nomLeu3.chr12 56838703 422 - 109391073 ------------------gagagagagagaCCTGTCCTATAGCCATACTTAGTGGGTGAAAGCCAAATAGCTCAATTTCTGCTCATGATACTTAATAGAACATAGGGAACATGAGCCAATAGCTCAGTGTGTTCAGATCTGCACCAAGTGCCTGTTGGATGCAGG--------ATTCTACTGTCTCCAATAATATGTCTCAGATGAACTAAttttt-------------tttttttttt--------------ttttt----tttttt-t-ttttgagacaga----------gtctcactctgtcgcccaggctggggtgcaatggcgcgatctgggctcactgcaacctccgcctcccgggttc--------------------------------------------acacacaccaccacgcccagc--------tacttactt-----------tttttttttttttttttagtagagac--agttttgccatgttggtcaggctggtctcaaactcccgacctcagttgatcAGAAGTAGGTGAGGTCAG i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128371872 422 + 229590362 ----------GAGAGAGAGAGAGAGAGACACCTGCCGTATAGCCATACTTAGTGGGTAAAAGCTAAAGAGCTCAATTTCTGCTCACGATACTTAATAGAACATAGGGAACATGAGCCAATAGCTTAATGGGTTCAGATCTGCACCAAGTGCCTGTTGGATGCAGG--------ATTCTACTGTCTCCAATAATATGTCTCAGATGGATTAAttttt---tctt------------------------------tttct----tttctt-t-ttttgagacaga----------gtctcgctctgtcgcccaggctggggtgcaacggcacgatcttggctcactgcaacctccgcctcccgggttc--------------------------------------------acacacaccacaacgccgggc------------ttttt-----------tttttttttgtatttttagtagagcgggactttagccatgttggtcagtctggtctcgaactcctgacctcagttgatcAGAAGTAGGTGAGGTCAG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 125109173 451 - 227556264 gagagagagagagagagagagagagagagaCCTGTCCTATAGCCATACTTAGTGGGTAAAAGCTAAAGAGTTCAATTTCTGCTCATGATACTTAATAGAACATAGGGAACATGAGCCAATAGCTCAGTGGGTTCAGATCTGCACCAAGTGCCTGTTGGATGCAGGATTCTACTATTCTACTGTCTCCAATAATATGTCTCAGATGGACTAAttttt---tatttta---------------------------tttat----ttattt-t-ttttgagacagagtctcgctctgtctcgctctgtcgcccaggctgggatgtaatggcgcgatctcggctcattgcaacctctgcctctcgggttc--------------------------------------------acacacaccaccacgcccggc--------------ttt-----------tgtttgtttgtttgtttagtagagacggagtttcgccatgttggtcagtctggtctcgaactcccgacctcagttgatcAGAAGTAGGTGAGGTCAG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98623186 507 - 220367699 ------gagagagagagagagagtgagagaccTGTCCTATAGCCATACTTAGTGGGTAAAAGCCAAAGAGCTCAATTTCTGCTCTTGATACTTAATAGAACAGAGGGAACATAAGCCAATAGCTCAGTGGGTCCAGATCCGCACTAAGTGCCTGTTGGATGCAGG--------ATTCTACCGTCTCCAGTAATATGTCTCAGATGGACTAGCtttc---tgttctattttgtttgttttgttttgtttttgcttttgt----ttttttgt-ttttgaagcaga----------gtctcgctctgttgcccaggctggggtgcaatggcacgatctcagctcactgcaaccaccgcttcctgggttcaagcgattctcctg--gcagcctcccgagtagctgggattacggacacacaccaccacgcccggc----tattttttttctt-----------ttttttttttttttttaagtacagacggagtttcaccatgttggtcagtctggtctggaactcctgacctcagttgatcagAAGTAGGTGAGGTCAG i papAnu2.chr1 C 0 C 0 s chlSab2.chr20_KE148049v1_random 202351 423 + 1557941 gagagagagagagagagattgagggagagaCCTGTCCTATAGCCATACTTAGTGGGTAAAAGCTAAAGAGTTCAATTTCTGCTCATGATACTTAATAGAACATAGGGAACATGAGCCAATAGCTCAGTGGGTTCAGATCTGCACCAAGTGCCTGTTGGATGCAGG--------ATTCTACTGTCTCCAATAATATGTCTCAGACGGGCTAAttttt-------------------------------------ttttt----tttttt-t-ttttgagacaga----------gtctcgctctgtcgcccaggctgggatgtaatggcgcgatctcggctcattgcaacctctgcctctcgggttc--------------------------------------------acacacaccaccaggcccggc--------------ttt-----------tgtttgtttgt---tttagtagagacggagtttcgccatgttggtcagtctggtctcgaactcctgacctcagttgatcAGAAGTAGGTGAGGTCAG i chlSab2.chr20_KE148049v1_random I 27 C 0 e calJac3.chr21 50451292 316 - 50472720 I a score=234877.000000 s hg38.chr1_KI270765v1_alt 70530 125 + 185285 AAAACATACCCTGGGAGAGGCTGGCACAATGCCCAGATCCGCCATCGCTAGGCCTGGGGTTTTCTTCTG-----------T-AGTATTCATGTAGTGCAGGGACAAAACCAATTAGATACTTCTGGGAGTTAAAAAG s panTro4.chr1_GL389091_random 82677 136 + 179278 AAAACATACCTTGGGAGAGGCTGGCACAATGCCCAGAACCGCCATCGCTAGGCCTGGGGTTTTCTTTTGTAGTGGAATACT-AGTATTCACGCAATGCAGGGACAAAACCAATTAGATACTTCTGGGAGTTAAAAAG i panTro4.chr1_GL389091_random C 0 C 0 s nomLeu3.chr12 56839125 136 - 109391073 AGAACATACCCTGGGAGAGGCTGGCACAACGCCCAGAACCGCCATCACTAGGCCTGGGGTTTTCTTCTGTAGTGGAATATT-AGTATTCATGTAGTGCAGGGACAAAACCAGTTAGATACTTCTGGGAGTTAAAAGG i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128372294 134 + 229590362 AAAACATACCCTGGGAGGGGCTGGCACAATGCCCAGAACCGCCATCGCTAGGCCTGGGGTTTTCTTCTGTAGTGG-ATACT-AGTATTCACGTAGTGCAGGGAC-AAGCCAATTAGATACTTCTGGGAGTTAAAAAG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 125109624 135 - 227556264 AAAACATACCCTGGGAGAGGCTGGCACAATGCCCAGAACCGCCATCGCTAGGCCTGGGGTTTTCTTCTGTAGTGG-ATACT-AGTATTCACGTAGTACAAGGACAAAACCAATTAGATACTTCTGGGAGTTAAAAAG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98623693 136 - 220367699 AAAACATACCCTGGGAGAGGCTGGCACAATGCCCAGAACCGCCATCGCTAGGCCTGGGGTTTTCTTCTGTAGTGG-ATACTAAGTATTCATGTAGTGCAGGGACAAAACCAATTAGATACTTCTGGGAGTTAAAAAG i papAnu2.chr1 C 0 C 0 s chlSab2.chr20_KE148049v1_random 202774 135 + 1557941 AAAACATACCCTGGGAGAGGCTGGCACAATGCCCAGAACCGCCATCCCTAGGCCTGGGGTTTTCTTCTGTAGTGG-ATACT-AGTATTCATGTAGTGCAGGGACAAAACCAATTAGATACTTCTGGGAGTTAAAAAG i chlSab2.chr20_KE148049v1_random C 0 C 0 e calJac3.chr21 50451292 316 - 50472720 I e ponAbe2.chrUn 11244560 2 + 72422247 I a score=714.000000 s hg38.chr1_KI270765v1_alt 70655 10 + 185285 AGATTAATTT s rheMac3.chr1 128372428 10 + 229590362 AGATGAATTT i rheMac3.chr1 C 0 I 400 e calJac3.chr21 50451292 316 - 50472720 I e chlSab2.chr20_KE148049v1_random 202909 0 + 1557941 C e ponAbe2.chrUn 11244560 2 + 72422247 I e papAnu2.chr1 98623829 0 - 220367699 C e macFas5.chr1 125109759 0 - 227556264 C e nomLeu3.chr12 56839261 0 - 109391073 C e panTro4.chr1_GL389091_random 82813 0 + 179278 C a score=0.000000 s hg38.chr1_KI270765v1_alt 70665 295 + 185285 gccgggcgcggtggctcacgcctgtaaccccagcactttgggagggttcacgaggtcaggagatcgagaccatcctggctaacgcggtgaaaccccgtctctactaaaaatacaaaaaattagccgggcgtggtggccggcgcctgtagtcccagctactggtaggaggctgaggcaggagaatggcgtgaacccgggagactgagcttgcagagagtcgagatcgtgccactgcactccagcctgagcgacagagcgagactccgtcaaaaaaaaaaaaaaaaaaaaaaaaaaa e calJac3.chr21 50451292 316 - 50472720 I e chlSab2.chr20_KE148049v1_random 202909 0 + 1557941 C e rheMac3.chr1 128372438 400 + 229590362 I e ponAbe2.chrUn 11244560 2 + 72422247 I e papAnu2.chr1 98623829 0 - 220367699 C e macFas5.chr1 125109759 0 - 227556264 C e nomLeu3.chr12 56839261 0 - 109391073 C e panTro4.chr1_GL389091_random 82813 0 + 179278 C a score=341.000000 s hg38.chr1_KI270765v1_alt 70960 6 + 185285 aaaaaa s ponAbe2.chrUn 11244562 6 + 72422247 AAAAAC i ponAbe2.chrUn I 2 C 0 e calJac3.chr21 50451292 316 - 50472720 I e chlSab2.chr20_KE148049v1_random 202909 0 + 1557941 C e rheMac3.chr1 128372438 400 + 229590362 I e papAnu2.chr1 98623829 0 - 220367699 C e macFas5.chr1 125109759 0 - 227556264 C e nomLeu3.chr12 56839261 0 - 109391073 C e panTro4.chr1_GL389091_random 82813 0 + 179278 C a score=21399.000000 s hg38.chr1_KI270765v1_alt 70966 11 + 185285 aGATGAATTTA s panTro4.chr1_GL389091_random 82813 11 + 179278 AGATGAATTTA i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 11244568 11 + 72422247 AGATGAATTTA i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56839261 11 - 109391073 AGATGAATTTA i nomLeu3.chr12 C 0 C 0 s macFas5.chr1 125109759 11 - 227556264 AGATGAATTTA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98623829 11 - 220367699 AGATGAATTTA i papAnu2.chr1 C 0 C 0 s chlSab2.chr20_KE148049v1_random 202909 11 + 1557941 AGATGAATTTA i chlSab2.chr20_KE148049v1_random C 0 C 0 e calJac3.chr21 50451292 316 - 50472720 I e rheMac3.chr1 128372438 400 + 229590362 I a score=314487.000000 s hg38.chr1_KI270765v1_alt 70977 135 + 185285 CAGTGTCATTTGAGAAGGGGTATTAAGGAATTTGCCAGGGTACTGACGCGTG-----------------TCAGGTGCAAACTGCAGGTTGAGAGAGAGCTAAGTATTTTCTGTCCATGAAGGTGATAAGCGAGGGCCTGAAGAAAGAGGAAG s panTro4.chr1_GL389091_random 82824 135 + 179278 CAGTGCCATTTGAGAAGGGTTATTAAGGAATTTGCCAGGGTACTGACGCGTG-----------------TCAGGTGCAAACTGCAGGTTAAGAGAGAGCTAAGTATTTTCTGTCCATGAAGGTGATAAGCGAGGGCCTGAAGAAAGAGGGAC i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 11244579 135 + 72422247 CAGTGCCATTTGAGAAGGGGTATTAAGGAATTTGCCAGGGTACTGACACGTG-----------------TCAGGTGCAAACTGCAGGTTGAGAGAGAGCTAAGTATTTTCTGTCCATGAAGGTGATAAGCGAGGGCCTGAAGAAAGAGGGAC i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56839272 134 - 109391073 CAGTGCCACTTGAGAAGGGGTTTTAGGGAATTTGCCAGGGTACTGACGCATG-----------------TCAGGTGTAAATCGCAGGTTGAGAGAGAGCTAAGTATTTTCTGTCCATGAAGGTGACAAGCGAGGGCCTGAAGAAAGAGGGA- i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128372838 135 + 229590362 CAGTGCCATTTGAGAAGGGGTATTAAGGAATTTGCCAGGGTACTGACGCGTG-----------------TCAGGTGTAAACCGCAGGTTGAGAGAGAGCTAAGTATTTTCTGTCCATGAAGGTGATAAGCAAGAGCCTGAAGAAAGAAGGGG i rheMac3.chr1 I 400 I 293 s macFas5.chr1 125109770 152 - 227556264 CAGTGCCATTTGAGAAGAGGTTTTAAGGAATTTGCCAGGGTACTGACGCGTAAACCGCAGGTGTAAACCGCAGGTGTAAACCGCAGGTTGAGAGAGAGCTAAGTATTTTCTGTCCATGAAGGTGATAAGCGAGGGCCTGAAGAAAGAGGGAA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98623840 133 - 220367699 CAGTGCCATTTGAGAAGGGGTATTAAGGAATTTGCCAGGGTACTGACACGTG-----------------TCAGGTGTAAACCGCAGGTT--GAGAGAGCTAAGTATTTTCTGTCCATGAAGGTGATCAGCCGGGGCctgaagaaagagggag i papAnu2.chr1 C 0 C 0 s chlSab2.chr20_KE148049v1_random 202920 135 + 1557941 CAGTGCCATTTGAGAAGGGGTATTAAGGAATTTGCCAGGGTACTGACGCGTG-----------------TCAGGTGTAAACCGCAGGTTGAGAGAGAGCTAAGTATTTTCTGTCCATGAAGGTGATAAGCGAGGGCCTGAAGAAAGACGGAA i chlSab2.chr20_KE148049v1_random C 0 C 0 e calJac3.chr21 50451292 316 - 50472720 I a score=618072.000000 s hg38.chr1_KI270765v1_alt 71112 268 + 185285 GGGGGAGGACACTGGCGCCAGAAATAGGAAAGGGCTGCTTGGGGGTGGGAAGGATGGGTCGGGGTGCTATCTAGAAAGCTGCCTGGCAATGGCTGTGGGATGCGGAAGCGAGACATCAAACAAGAAGCTGTCGCTTAAATAAAGTCTGAAGAAAGACTAGATATGTAAACGGCAggagatagtagggaaactggacccgtctcctcataaaacttcccgcctta-tatttcagggaggatcgcagcgcatttcggccaagacaggtgag s panTro4.chr1_GL389091_random 82959 268 + 179278 CGGGGAGGACACTGGCGCCAGAAATAGGAAAGGGCTGCTTAGGGGTGGGAAGGATGGGTCGGGTTGCTGTCTAGAAAGTTGCCTGGCAATGGATGTAGGATATGGAAGCGAGACATCAAACAAGAAGCTGTCATTTAAATAAAGTCTGAAGAAAGACTAGATATGTAAACGGCAggagatagtagggaaactggaccccgctgctcataaaacttcccgcctta-tatttcagggaagatcgcagcgcatttcagccaagacaggtgag i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 11244714 266 + 72422247 CGGGGAGGACACTGGCTCCAGAAATAGGAAAGGGCTGCTTGGGGGTGGGAAGGATGGGTTGGGGTGCTGTCTAGAAAGTTGCCTGGCAATGGATGTAGGATGTGGAAGTGAGACATCAAACAAGAAGCTGTCATTTAAATAAAGTCTGAAGAAAGACTagatatgtaaacggtaggagatagtagggaaactggaccccgctgctcataaaacttcccgcctta-tatttcagggaggatcgcagcatatttcggccaagac--gtgag i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56839406 269 - 109391073 CGGGAAGGACACTGGCGCCAGAAATAGGAAAGGGCTGCTTGGGGGTGGGAAGGATGGGTCGGGGTGCTGTCTAGAAAGTTGCCTGGCAATGGATGTAGGATGTGGAAGCGAGACATCAAACAAGAAGCTGTCGCTTAAATGAAGTGTGAAGAAAGACTAGATATGTAAGCGGCAggacatagtagggaaactggacccggctcctcataaaacttcccgccttactatttcagggaggatcgcagcgcatttcggccaagacatgtgag i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128373266 268 + 229590362 GGGGGAGGACACTGGCGCCAGAAATGGGAAAGGGCTGCTTGGGGGCGGGAAGGATGGGTGGGAGTGCTACCTAGAAAGCTGCCTGGCAATGGATGTAGGATGTGGAAGCGAGACATCAAACAAGCAGCTGTCACTTGAATAAAGTCTGAAGAAAGACTAGATATGTAAACGGCAGGAAATAGTAGGGAAACTGGACCCGGCTCCTCGTAAAACTTCCCGCCTTA-CATTTCAGGGAGGATCGCAGCGCATTTCCGCCAAGACATGTGAG i rheMac3.chr1 I 293 N 0 s macFas5.chr1 125109922 267 - 227556264 GGGGGAGGACGCTGGCGCCAGAAATGGGAAAGGGCTGCTTGGGGGCGGGAAGGATGGGTGGGA-TGCTATCTAGAAAGCTGCCTGGCAATGGATGTAGGATGTGGAAGCGAGACATCAAACAAGAAGCTGTCACTTGAATAAAGTTTGAAGAAAGACTAGATATGTAAACGGCAGGAGACAGCAGGGAAACAGGACCcggctcctcgtaaaacttcccgcctta-tatttcagggaggatcgcagcgcatttccgccaagacaagtgag i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98623973 265 - 220367699 ---gggggACGCTGGCGCCAGAAATAGGAAAGGGCTGCTTGCGGGTAGGAAGGATGAGTGGGGGTGCTACCTAGAAAGCTGCCTGGCAATGGATGTAGGATGTGGAAGCGAGACATCAAACAAGAAGCTGTCGCTTAAATAAAGACTGAAGAAAGATCAGATATGTAAACGGCAGGAGACAGCAGGGAAACTGGATCCGGCTCCTCCTAAAATTTCCCGCCTTA-TATTTCAGGGAGGATCGCGGCACATTTTGGCCAAGACAGGTGAG i papAnu2.chr1 C 0 C 0 s chlSab2.chr20_KE148049v1_random 203055 268 + 1557941 GGCGGAGGACACTGGCGCCAGAAATGGGAAAGGGCTGCTTGGGGGCGGGAAGGATGGGTGGGAGTGCTATCTAGAAAGCTGCCTGGCAATGGATGTAGGATGTGGAAGCGAGACATCAAACAAGAAGCTGTCGCTTGAATAAAGTCTGAAGAAAGACGAGATATGTAAACGGCAggaaatagtagggaaactggacctggctcctcgtaaaacttcctgcctta-catttcaggaaggatcgcagcgcatttccgccaagacaggtgag i chlSab2.chr20_KE148049v1_random C 0 C 0 e calJac3.chr21 50451292 316 - 50472720 I a score=72727.000000 s hg38.chr1_KI270765v1_alt 71380 42 + 185285 actgcggttttgacctgcgggcctcgatgaat-tgcgttagga s panTro4.chr1_GL389091_random 83227 42 + 179278 actgcggttctgacttgccggcctcgaggaaa-ttcattaggg i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 11244980 42 + 72422247 actgctgttctgacctgcgggcctcgaggaat-tgcattaggg i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56839675 42 - 109391073 actgccgttctgacctgcgggcctcaatgaat-tgcgttaggg i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128507927 43 + 229590362 actgcggttctgacctgcgggcctcaatgaatatgcactaggg i rheMac3.chr1 N 0 N 0 s macFas5.chr1 125110189 43 - 227556264 actgcggttctgacctgcgggcctcaatgaatatgcactaggg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98624238 36 - 220367699 ---GTGA----GGCCTATGGGCCTCGATGAATATGGTTTAGGG i papAnu2.chr1 C 0 C 0 s chlSab2.chr20_KE148049v1_random 203323 43 + 1557941 actgcggttctgacctgcgggcctcaatgaatatgcactaggg i chlSab2.chr20_KE148049v1_random C 0 C 0 e calJac3.chr21 50451292 316 - 50472720 I a score=1000.000000 s hg38.chr1_KI270765v1_alt 71422 1 + 185285 c s panTro4.chr1_GL389091_random 83269 1 + 179278 c i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 11245022 1 + 72422247 c i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56839717 1 - 109391073 c i nomLeu3.chr12 C 0 C 0 s papAnu2.chr1 98624274 1 - 220367699 C i papAnu2.chr1 C 0 C 0 e calJac3.chr21 50451292 316 - 50472720 I e chlSab2.chr20_KE148049v1_random 203366 0 + 1557941 C e macFas5.chr1 125110232 0 - 227556264 C a score=578536.000000 s hg38.chr1_KI270765v1_alt 71423 281 + 185285 acctgggctccgggagagccgttccactCCGcaaagtaagcgtgttatg--tctacaacccaacggggacgcgctaagagccctaaaggccctgctttcATCCCAAAGAACAGCCCCCGCCTGCATAGTTTGTACCCGGCTCTATGAGGTGAGAACACATTCCCCGCTAGCACAGAAATCCTACAGACTCCTGAGGGGGCTGCAGCTAGAAGCAGAGGCTGTGTGAAATGTGACT---GGGGGCTAGGGAAAAACACGTAGATTTTCACAGACCCTGAGAACCCAA s panTro4.chr1_GL389091_random 83270 282 + 179278 acctgggcgctggtaaagtcgttcccCTCCacaaagtaagcgtgttatg--tctacagcccaacggggacac--taagagccccaaaggccctgttttcATCCCAAAGAACAGCGCCCTTCTGCGTAGTTTGTACCTAGCTCTATGAGGTGAGAACACATTCCCCGCTAGCGCAGAAATCCTACAAACTCCTGAGGGGGCTAGGGTTAGAAGCAGAGGCTGTGTAAAAGGTGACTCTTGGGGGCTAGACAAAAACACGAAGATTTTCACAGAGCGTGAGAACCCAA i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 11245023 281 + 72422247 acctgggcgccggtaaagccgttcccctccacaaagtaagcgtgttatg--tctacaacccaacggggacac--taaaagccccaaaggccctgctttcACCCCAAAGAACAGCGCCCCTCTGCATAGTTT-TACCTGGCTCTATGAGGTTAGAACACATTCCCCGCTAGCACAGAAATCCTATGAACTCCTGAGGGGGCTGCGGTTAGAAGCAGAGGCTGTGTAAAAGGTGACTCTGGGGGGATAGAGAAAAACACGAAGATTCTCACAGAGCTTGAGAATCCAA i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56839718 279 - 109391073 acctgggctccgggagagccgttcccctccacaaagtaagcgtgttatg--tctacaacacagcggggacac--taagagccccaaaggccctgctttcTTCCCAAAGAACAGCGCCCGTCTGCGTAGTTGGTACCTGGCTCTATGAAGTGAGAACACATTCACCGCTAGCACAGAAATCCTACAAACTCCTGTAGGGGATGCAGTTAGAAGCAGAGGCTGTATAAAAGATGACT---GGGTGCTAGGGAAAAACACGAAGATTTTTACAGATCGTGAGAACCCAA i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128373534 263 + 229590362 ACCTGGGCGCTGGGAGAGCCGTTCCCCTACACAAAGTACGCATATCATGTATATACAACCCAGCGGGGACAC--TAAGAGCTCCAAAGGCCCTGTTTTCTTCCCAAAGAACAGCGCCCGTCTGCGTAGTTTGTACCTGGTTCTATGAAGTGAGAACGCATTCCCCCC-AGCACAGAAAGCCTACTG-----------------AGTTAGAAGCAGAAGCTGTATAAAAGGTGACT---GGGGGCTAGGGAAAAACACGAAGATTTTTACAGATCGTGAGAACCCAA i rheMac3.chr1 N 0 C 0 s macFas5.chr1 125110232 277 - 227556264 acctgggcgctgggagagccgttcccctacacaaagtaagcgtgttatg--tatacaatccagcggtgacac--taagagccccaaaggccctgttttcTTCCCAAAGAACAGCGCCCGTCTGCGTAGTTTGTACCTGGCTCTATGAAGTGAGAACGCATTCCCCCCTAGCACAGAAATCCTACAAACTACTGTGGGGGCTGCAGTT--AAGCAGAAGCTGTATAAAAGGTGACT---GGGGGCTAGGGAACAACACGAAGATTTTTACAGATCGTGAGAACCCAA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98624275 279 - 220367699 ACCTGGGCGCCAGGAGAGCCGTTCCCCTACGCAAAGTAAGCGAGTTATG--TCTACAACCAAACGGGGACAC--TAAGAGTCCCAAAGACCGTGTTTTCTTCCCGAAATACAGCGCCCGTCTGCATAGTTTGTACCTGGCTCTACGAGGTGAGAACACATTCCCCGCTAGCACAGAAATCCCACAAACTCCTGAGGGGGCTGCGGTTACAAGCAGAGGCTGTGTAAAAGGTGATT---GGGGGCTAGGGAAAAACACCAAGATTTTCACAGAGCGTGAGAATCCAA i papAnu2.chr1 C 0 I 399 s chlSab2.chr20_KE148049v1_random 203366 278 + 1557941 acctgggcgctgggagagccgttcccctacacaaagtaagcgtgttatg--tatacaacccagcggggacac--taagagccccaaaggccctgttttcTTCCCAAAGAACAGCGCCCGTCTGCGTAGTTTGTACCTGGCTCTATGAAGTGAGAACACATTCCCCCC-AGCACAGAAATCCTACAAACTACTGTGGGGGCTGCAGTTAGAAGCAGAAGCTGTATAAAAGGTGACT---GGGGGTTAGGGAACAACACGAAGATTTTTACAGATCGTGAGAACCCAA i chlSab2.chr20_KE148049v1_random C 0 C 0 e calJac3.chr21 50451292 316 - 50472720 I a score=108262.000000 s hg38.chr1_KI270765v1_alt 71704 77 + 185285 GAGACTGCAGACCATGGGCAGACAAATCTCTGC-AAAAAGCAGCCCCGCCTAGATAAAGGAAGAGCTGTGCGGCCTTC s panTro4.chr1_GL389091_random 83552 72 + 179278 GACACTGGAGACCATGG----ATCAACCTCTGC-AAAAAGCAGCCCTGCGTGGA-AAGGGAAGAGCTGTGCGGCCTTC i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 11245304 72 + 72422247 AACACTGGAGACCATGG----ACCAATCTCTGC-AAAAAGCAGCTCTGCATGGA-AAAGGAAGAGCTGTGCGGCCTTC i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56839997 73 - 109391073 GACACTGAAGACGATGA----ACCAATCTCTGCAAAAAAACAGCACCACCTGGA-AAAGGAAAAGCTGTGCGGCTTTC i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128373797 72 + 229590362 GACACTGGAGACTATGG----ACCAATCTCTGC-AGAAGGCAGCCCCGCATAGA-AAAGGAAGAGCTGTGCGGCATTC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 125110509 72 - 227556264 GACACTGGAGACCGTGG----ACCAATCTCTGC-AGAAGGCAGCCCCGCATAGA-AAGGGAAGAGCTGTGCAGCCTTC i macFas5.chr1 C 0 C 0 s chlSab2.chr20_KE148049v1_random 203644 72 + 1557941 GACACTGGAGACCATGG----ACCAATCTCTGC-AGAAGGCAGCCCCGCATAGA-AAGGGAAAAGCTATGCGGCCTTC i chlSab2.chr20_KE148049v1_random C 0 I 99 e calJac3.chr21 50451292 316 - 50472720 I e papAnu2.chr1 98624554 399 - 220367699 I a score=8378.000000 s hg38.chr1_KI270765v1_alt 71781 18 + 185285 GCGCTAGCTAGCTTGTG-----T s panTro4.chr1_GL389091_random 83624 18 + 179278 GTGCTAGTTTGCTTGTG-----T i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 11245376 19 + 72422247 ATGCTAGTTTGCTTGTGT----T i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56840070 23 - 109391073 AGGCTAGTTACCTTTTGTGTCAC i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128373869 18 + 229590362 ACGGTGGTTACCTTATG-----T i rheMac3.chr1 C 0 I 139 s macFas5.chr1 125110581 18 - 227556264 TCGGTAGTTACCTTATG-----T i macFas5.chr1 C 0 I 3 e calJac3.chr21 50451292 316 - 50472720 I e chlSab2.chr20_KE148049v1_random 203716 99 + 1557941 I e papAnu2.chr1 98624554 399 - 220367699 I a score=31295.000000 s hg38.chr1_KI270765v1_alt 71799 77 + 185285 AAAGGTCGACGA---TTCTTATTTCTCCCGGGGCGGGGAGAAAGCGACATATTACT-ACTATTTCTCAGCCTTCGACTGTG s panTro4.chr1_GL389091_random 83642 75 + 179278 TAAGGCTGACGC---TTCCTATTTCTCCTCCAGCGGA---AAAGCGACACCTTACTTCCTATTCCTCAGCCTTCCACTGTA i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 11245395 75 + 72422247 TAAGGCTGACCC---TTCCTATTTCTCCTCCGGCGGG---GAAGCGACATCTTACTTTCTATTCCCCAGCCTTCCACTGTA i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56840093 76 - 109391073 AACAGCTGACGCTTATTTCTCTTCTTCCTCCAGCA-----CAGTCGACATGTTACTTCCTATTCCCCCTCCTTCCACTGTA i nomLeu3.chr12 C 0 C 0 s macFas5.chr1 125110602 73 - 227556264 AAGGGCTGAAAG---TTCTTATTTCTCCTCTGACAGA---GAATCG--ATGTTACTTACCATTCTTCAGCCTTCCACAATA i macFas5.chr1 I 3 C 0 e calJac3.chr21 50451292 316 - 50472720 I e chlSab2.chr20_KE148049v1_random 203716 99 + 1557941 I e rheMac3.chr1 128373887 139 + 229590362 I e papAnu2.chr1 98624554 399 - 220367699 I a score=11003.000000 s hg38.chr1_KI270765v1_alt 71876 63 + 185285 AGAGTAACGATTA----AGA------C-TAAAACACAAGCC-AGTAAAAAAAACAAG-TAACCCTTGCTGTGTAGA s panTro4.chr1_GL389091_random 83717 59 + 179278 AGAATAAC----A----GGA------C-CAAGCCACAAACC-AATGAAAGAAAAAAG-TAACACTTAAAGTACAAC i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 11245470 59 + 72422247 AGAATAAC----A----CGA------C-CAAGCCACAAACC-AATGATACAAAAGAG-TAACACTTAGAGCACAGC i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56840169 68 - 109391073 AGAATAACACCTG----TGACGCAACC-CAAGCCACAG--C-AACAAAAGGAAAAAGATAATTGTCAGTGTACAGG i nomLeu3.chr12 C 0 C 0 s macFas5.chr1 125110675 46 - 227556264 AGAATAACATTTACACGCCA------CACAAAACACAAACCTAGTACACAA------------------------C i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98624953 64 - 220367699 agaataacacttA----CTA------C-CAAGATACAAACC-AATACAAAAACTAATATAACCCTTCCAATAAAGC i papAnu2.chr1 I 399 C 0 e calJac3.chr21 50451292 316 - 50472720 I e chlSab2.chr20_KE148049v1_random 203716 99 + 1557941 I e rheMac3.chr1 128373887 139 + 229590362 I a score=20155.000000 s hg38.chr1_KI270765v1_alt 71939 16 + 185285 CTATTCTTT---AAACTAC s panTro4.chr1_GL389091_random 83776 16 + 179278 TTATTCTTG---AAACTAC i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 11245529 16 + 72422247 CTATTCTTG---AAACTAC i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56840237 16 - 109391073 TTACTTCTT---AAAGAAC i nomLeu3.chr12 C 0 I 1 s macFas5.chr1 125110721 15 - 227556264 CTATTCTTT---TAACTA- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98625017 16 - 220367699 CTACTTTTT---AAACTAC i papAnu2.chr1 C 0 I 1 s chlSab2.chr20_KE148049v1_random 203815 16 + 1557941 CTATTCTTT---GAACTAC i chlSab2.chr20_KE148049v1_random I 99 C 0 s calJac3.chr21 50451608 19 - 50472720 CTGTTTTTTGGCAAACTAC i calJac3.chr21 I 316 C 0 e rheMac3.chr1 128373887 139 + 229590362 I a score=2213623.000000 s hg38.chr1_KI270765v1_alt 71955 874 + 185285 AAAAAATcaggggaaagcgcgaacgcagt-cccccactaccacaaattatgcagtcgagttt-cccacatttggggaaatcgcaggggtcagcacatccggagtgcaatgga-taagcctcgccctgggaaaaccacattcgtgatcatggtatctcccctgccaggtaagtatGAGCTCTTGCACCTCCGCCCCGCCACAGCCTCACACGCTTCACCCTTTACACGCACGGTCACTTGCCCCGCGCAGCCCCACCC----CCCCCAGCCCTCCTAGCCCTGACACACAGCTGGGACTCTCAGGTCCGACCAGCGGTCCTGAATCCGCTCCCACGGCACGGGAAATCCTTCGTGGCGAAGCAGCAGGTGGGGAAGCAGCAGCCCCTGCGCTGCCTCATCTACATAGAAGTCGCCCTATCCGTGATGTCACCGACAGTGCCTTTCCCAGTCCCCGTCTGCCTTTCTGCCGCTCAGCCTACCAACCCGCTGCCGGAGCCGGCAG-GGGGAAGTGA-CGTCTGTCTCTCCC-----------------TTTTTTCCCTCCCGCCCCGGCATCTGTTCTCGCCCGAAGAAGCTGGTCCTTAGCCTGCGCTGCGGAGCAACCTTTCAGTGGCCAGCTGGAGCCTGGGCACCGTTCTTCAAATAATGGCTTTTAATTCTCAGACGAGAACGTTTAGGATTACAAAAGAAACCGGTTCTCTTCACATCCTTATCCTTGTCATGTAGCATTCCGCTTGAAATTGGAAGCCGTTCAATGTCAGAGAGAAACCATATTTATGAAATGAAAGAGGCTTCTCAGATGACTGCAAACCAGCCTTCC-------------------------------------------------------------------TTACTGGTTTTATCACTGGTAATGTTATAAAGACAGTTGTCCAGTTTCATGAATCTTGTAGgttttt s panTro4.chr1_GL389091_random 83792 866 + 179278 AAAATAAcaagggaaagcgcgaacgcagt-ccaccactaccacaaattttgcagtcgagttt-cccacatttggggaaatcacatgggtcagcacatccagagtgcaatgga-taaacctcatcctgggaaaaccaccttcatgatcatggtatctcccctgccgggtaagtatGAAGTCCCGCACCTCCGCCCCGCCACAGCCTCATACACCTCACCCTTTACACTCACGGTCGCTTGCCCCGCGCA--------C----CCCTGAGCCCTCCTAGCCCTGACACACAGCTGGGACTCTCAGGTCCGACCAGCGGTCCTGAACCCGCTCCCATGGCTCGGGAACTCCTTCGTGGTGAAGCAGCAGGTGGGGAAGCAGCAGCCCCTGGGCTGCCTCATCTACACAGAAGTCGCCCTATCCATGATGTCACCGGCCGTGCCTTTCCCGGTCCCCGTCTGTCTTTCTGCCACTCAGCCGACCAACCCGCTGCCTGAGCCGGCAA-GGGGAAGTGA-CGTCTGTCTCTCCC-----------------TTTTTTCCCTCCCTCCCAGGCATCTGTTCTCGCCCAAAGAAGCTGGTCCTTAGCCTGCGTTGCGGAGCAAACTTTCGGCGGCCAGATGGAGCCTGGGCACCCTTCTTCAAATAATGGCTTTTAATTCGCAGACTAGAACGTATAGGACTACAAAAGAAACCAGTTTTCTTCACATGCTTATCCTTGTGATGTAGCATTCCGGTTGAAATTGGAAGCCATTCAATGTGAGAGAGAAACCATATTTATGAAAGTAAAGAGACTGCTCAGATGACTGCAAACCAGCCTTCC-------------------------------------------------------------------TTACTGATTTTATCACTGGTAATGTTATAAAAACAGTTGTCCAGTTTCATGAATCCTGTAGTTTTTT i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 11245545 865 + 72422247 AAAATAccagaagaaagcacaaacgcagt-cccccactactacaaattatgcagtggaattt-cccacatttggggaaatcgcatgggtcagcatatcccgagtgcaatgga-caagcctcgctctgggaaaatcaccttcatgttcatggtatcttctctgcaacgtaaatatGAGGTATCGCACCTCCGCCCCACTACAGCCTCATACGCCTCACCCTTTACACTCACGGTCGCTTGCCCCGCGCA--------C----CCCTGAGCCCTCCTAGCCCTGACACACAGCTAGGACTCTCAGTTCCGACCAGCGGTCCTGAACCCGCTCTCACGGCAGGGGAACTCCTTCGTGGTGAAGCAGCAGGTGGGGAAGCAGCAGCCCCTGCGCTGCCTCATCTACATAGAAGTCACCCTATCCGTGATGTCGCCAACAGTGCCTTTCCCAGTCCCCGTCTGTCTTTCTGCTACTCAGCCTACCAACCCAATGCTTGAGCCAGCAA-GGGGAAGTGA-CATCTGCCTCTCTC------------------TTTTTCCCTCCTGCTCCCGCATCTGTTCCCGCCCAAAGAAGCTGGTCCTTAGCCTGCATTGCAGAGCAAACTTTCGGCGGCCGGATGGAGCCTGGGCACCCGTCTTCAGATAATGGCTTTTAATTCGCAGACTAGAACGTATAGGACTACAAAAGAAACCGGTTTTCTTCACATGTTTATCTTTGGGATGTAGCATTCCGGTTGAAATTGGAAGCCGTTCAATGTAAGAAAGAAACCATATTTATGAAAGTAAAGAGACTGCTCAGATGACTGCAAACCAGCCTTCC-------------------------------------------------------------------TTACTGGTTTTATCACTGGTAATGTTATAAAAACAGTTGTCCAGTTTCATGAATCCTGTAGTTGTTT i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56840254 865 - 109391073 AAAAAAccagaggaaagcgcaaacgcaatccccccactaccacaaactatgcagtcgagtttccccgcatttggtgaaatcagaggagtcagcatgcccgcagtgtaacggattaagcctcagcctaaagaaaccaccttcctgaccatggaatctgttctgacaagtacgtaCGAATTCCTACCCCTCCTCCCCGCCACAGCCTCATACGCCTCACCCTTTACACGCACGGTCACTTGCCCCGCGCA--------C----CCCCGAACCCTCCTAGACCTGACACACAGCTGGGACTCTCAGGTCCGACCAGCGGTCCTGAGCCCGCTCCCACGGCACGGGAACTCCTTCGTGGCGAAGCAGCAGGTGGGGAAGTAGCAGCCCCTGCACTGCCTCATCTACATAGAAGTCGCCCTATCCGTGATGTCACCGACAGTGCCTTTCCCAGTCCCCGTCTGCCTTCCTGCCGCTTAGCGGACCAACCCGCTGTTTCAGCCGGCAA-GGGGAAATGA-AGTCTGCTTCTCCC------------------TTTTTCCCTCCCGCCCCCTCATCTGTTCTCGCCCAAAGAAGCTTGTCGTTAGCCTGCGTTGCGGAGCAAAC---AggcggccagatggaggctgggcacccttcttcaaataatggctttgaattcgcagactagaaggtttaggattacaaaagaaatcgattCTCCTCACATCCTGATCCTTGGGACGTAGCATTCTGCTTGAAATTGGAAGCCGTTTAATATCAGAGAGAAACCATATTTATGAAAGTAAAGAGACTGCTCAGATGACTGCAAACCAGCCTTCC-------------------------------------------------------------------TTACTGATTTTATCACTGGTAATGTTATAAAGACAGTTGTACAGTTTCATGAATCTTGCAGGGtttt i nomLeu3.chr12 I 1 C 0 s rheMac3.chr1 128374026 853 + 229590362 AATAGTTcaggggaaagcgcgaacgcagt-cccccactaccacaaatcatgcagtcgagttt-cccatatttggggaaatcgca-gagtcagcacacccgtagtgcaatagg-taagtctcgccctgagaaaaccaccttcgtggtcatggtatttcccttactaggtaagcatGAGTTTCCGCACCTCCGCCCCGCCACAGCCTCATACGTCTCACCCTTTACACACAAGGTCACTTGCCCCGTGCA--------C----TCCCGAGCCCTTCTAGTCCTGGCACACAGCTGGGACTCTCAGGTCCGACCAGCGGTCCCGAACCCGCTCCCACAGCACGGGGACTCCTTCGTGG-GAAGCAGCAGGTAGGGAAGCAGCAGCCCCTGCGCTGCCTCATCTACATAGAATTCGCC----CTGCGATGTCACAGACAGTGCCTTTCCCAGTCC----CTGCCTTTCTGTCACTCAGCAGACCAACCCGCT-CCGGAGCCCACAAGGGGGAAGTGA-TGTCTGCCTCTCT-------------------TTTTTCCCTCCTGCCCCCGCATCTGTTCTCTCCCAAAAAAGCTGGTGGTTGGCCTGTGTTGAGTAGCAAGCTTTCCGTGGCCAgatggagcccgggaacccttcttcaaataatggcttttaattcgcagactggaacgtttaggattacaaaagaaacc-GTTCTCTTCACATCCTTATCCTTGGGTTGTAGCATTCCGCTTGAAATTGGAAGCAGTTTAATATCAGAGAGAAACCATATTTATGAAAGTAAAGAGGCTGCTCAGATGACTGCAAACCAGCCTTCC-------------------------------------------------------------------TTACTGATTTTATCACTGGTAATGTTATAAAGACAGTTGTCCAGTTTCATGAATCTCGTAGtttttt i rheMac3.chr1 I 139 I 122 s macFas5.chr1 125110736 835 - 227556264 AAAAACTcaggggaaagcgcgaacgcagt-cccccactaccacaaattatgcagtcgagttt-cccacatttggggaaatcgcaggggtcagcacatccggagtgcaatgga-taagcctcgccctgggaaaaccaccttcgtgatcatggtatctcccctgccaggtaagtatGAGCTCCGGCACCTCTGCCCAGCCACAGCCTCATACGTCTCACCCTTTACACACAAGGTCACTTGCCCCGTGCA--------C----TCCCGAGCCCTTCTAGCCCTGGCACACAGCTGGGACTCTCAGGTCCGACCAGCGGTCCTGAACCCGCTCCCACAGCACGGCAACTCCTTCGT----------------GGGAAGCAGCAGCCCCTGCGCTGCCTCATCTACATAGAAGTCGCCCTATCTGTGATGTCACCGACAGTGCCTTTCCCAGTCC----CTGCCTTTCTGCCACTCAGCAGACCAACCCGCT-GCGAAGCCAGCAA-AAGGAAGTGA-CGtctgcctctgc-------------------ttttgccctcc-gcccccgcatctgcgctctCTCAAAAAAGCTggtcgttagcctgtgttgtgaagcaacctttcggcggccagatggaggttgggaacccttcttcaaataatggcttttaattcgcagactagaacgtttaggattacaaaagaaaccggttCTCTTCACATCCTTATCCTTGGGATGTAGCATT-CGCTTGAAATTGGAAGCAGTTTAATATCAGAGAGAAACCATATTTATGAAAGTAAAGAGACTGCTCAGATGACTGCAAACCAGCCTTCC-------------------------------------------------------------------TTACTGATTTTATCACTGGTAATGTTATAAAGACAGTTGTCCAGTTTCATGAATCTTGTAG------ i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98625034 861 - 220367699 AAAATGTCAGGGGAAAGCGCGAACGCAGT-CCCCCACTACCACAAATTATGCAGTCGAGTTT-CCCACATTTGGGGAAATCGCAGGGGTCAGCACATCCGGAGTGCAATGGA-TAAGCCTCGCCCTGGGAAAACCACCTTCGTGATCATGGTATCTCCCCTGCCAGGTAAGTATGAACTGTTGTACCTCCGCCCTGCCACAGCCTCATACGTCTCACCCTTTACACACACGGTCACTTGCCCCGCGCA--------C----TCTCGAGCTCTCCTAGCCCTGACACACAGCTGGGACTCTCAGGTCCGACCAGCGGTCCTGAACCCGCTCCCACGGCAGGGGAACTCCTTCGTGGCGAAGCAGCAGATGTCGAAGCAGCAGCCCCTGCGCTGCCTCATCTACATAGAAGTCGCCCTCTCCGTGATGTCACCGACAGTGCCTTTCCCAGTCCCCGTCTGCCTTTCTGTCACTCAGCGGACCAACCCGCTGCCGGAGCCCACAA-GGGGAAGTGA-CGTTTGcctctcc-------------------cttttttcctctgCCGCCGCATCTGTTCTCTCCCAAAGAAGGTGGTGCTTAACCTGTGTTGTCTAACAACCTTTCGGCGGCCCGATGAAGCCTGGACATCCTTCTTCAAATAATGACTTTTAATTCGCAGACTAGAACGTTTAAGATTACAAAAGAAACCGCTTCTCTTCACATCCTTATCGTTGGGATGTAGCATTCAGCTTGAAATTGGAAGCCGTTTAATATCAGAGAGAAACCATATTTATGAAAGTAAAGAGACTGCTCAGATGACTGCAAACCAGCCTTCC-------------------------------------------------------------------TTACTGGCTTTATCACTGGTAATGTTATAAAGACAGTTGTCCAGTTTCATGAATCTTGtagttg--- i papAnu2.chr1 I 1 C 0 s chlSab2.chr20_KE148049v1_random 203831 855 + 1557941 -AAAACTcaggggaaagcgcgaacgcagt-cccccactaccacaaattatgcagtcgagttt-cccacatttggggaaatcgcaggggtcagcacatccggagtgcaatgga-taagcctcgccctgggaaaaccaccttcgtgatcatggtatctcccctgccaggtaagtatGAGCTCTGCTACCTCCGCCCCGCCACAGCCTCATACGTCCCACGCTTTACACACAAGGTCACTTGCCCCGCGCA--------C----TCCCGAGCCCTTCTAGCCCTGGCACACAGCTGGGACTCTCAGGTCCGACCAGCGGTCCCGAACCCGCTCCCACGGCACGGGAACTCCTTCGTGG-GAAGCAGCAGGTAGGGAAGCAGCAGCGCCTGCGCTGCCTCATCTACATAGAAGTCGCCCTATCTGTGATGTCACCGACAGTGCCTTTCCCAGTCC----CTGCCTTTCTGCCACTCAGCAGACCAACCCGCT-GCGGAGCCAGCAA-AAAGAAGTGA-CGTCTGCTTCTCC-------------------TTTTCCCTCCC-ACCCCCGCATCTGTTCTCTCCCAAAAAAGCTGGTCGTTAACCCGTGTTGAGTAGCAAccttttggcggccagatggaggctgggaacccttcttcaaataatggcttttaatttgcagactagaacgtttaggattacaaaagaaaccggttCTCTTCACATCCTTATCCTTGGGATGTAGCATT-CGCTTGAAATTGGAAGCAGTTTAATATCACAGAGAAACCATATTTATGAAAGTAAAGAGACTGCTCAGATGACTGCAAACCAGCCTTCC-------------------------------------------------------------------TTACTGATTTTATCACTGGTAATGTTATAAAGACAGTTGTCCAGTTTCATGAATCTTGTAGtttttt i chlSab2.chr20_KE148049v1_random C 0 C 0 s calJac3.chr21 50451627 946 - 50472720 GGAAGAccaggggaaagcgcgaacgcagt-cccccactaccacaaattatgcagtcgagttt-cccacatttggggaaatcgcaggggtcagcacatccggagtgcaatgga-taagcctcgccctgggaaaaccaccttcgtgatcatggtatctcccctgccaggtaagtatGAATTCCCACGCCTCCGCCCCGCCACAGCCTCATAGGCCTCACCCTTTACATTCACGGTCACTTCCCGCGGGCA--------CTGCTCCCCCAGCCCTCCTAGCCCTGACACACAGCTGGGGCTCTCGGCTCCGACCGGCGGTCCTGGACTGGCTCCCACAGCG-GGGAACTCCTTCGTTGGGAAGCAGCAGGTGGCCAACCAGCAGCCCCTGCGCTGCCTCATCTACATAGAAATGGCCCTATCCGTGATGTCACCGACAGTGCCTTTTCCAGTCCCAATCTCTTCCACCGCCTCTCAGCCGACCAACCCGCAGTCGGAGCTGG-AG-GGGGAAGTGACCGTCGGCCTctcccttccctccttccctccctccctctcctccctcccCCGTGTCTGTTCTCTCCCAAAGGAGCGACTCCTTATCCTACGTTGCCGAGTACCGTCTCAgcggccaagtggagcctgtgcacccttcttcaaataatggcttt-aattctcacactagaacgtttagggttacaaaataaaccacttCTCTCCAC------ATCCTTGTGATGTAGCAATCCCCTTGAAATTGGAAGCTGTTCAGTATCAGAGAGAAACCATATTTATGAAACTAGAGAGAGGGCTCAGATGACTGCACACCAGCCGTCCAGGACAGAAACGCAGTCTCACCTGTCTTGGAGGAATGCTTCGGTCCTCCCAGGAATACAAACCAGTGATAATAGTTTTATCACTAGTAATGTTGTAAAGACTGTTGTCCAGTTTCACGAATCTTGCTGTTTTTT i calJac3.chr21 C 0 C 0 a score=168191.000000 s hg38.chr1_KI270765v1_alt 72829 129 + 185285 gtttgtttatttgtttgcttttgatgttgttgttgttgctgttgtttTCCAAATTCAGTATTGTAGAAAAATATGCTGCCCCAGAAGAGATGATTGGACACTCTCCAGCGTGGTGTTGGACTTTGTCAT s panTro4.chr1_GL389091_random 84658 107 + 179278 -----------------TTTTTTATGTTGTTGTTTTT-----TTTCCCCCAAATTCAGTATTGTAGAAAAATATGCTGATCCACAAGAGATGATTGGACACTCTCAAACGTGGTATTGGACTTTGTCAT i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 11246410 110 + 72422247 -------------TTTTTTTTTGATGTTGTTGTTTT------TTTTTCCCAAATTCAGTATTGTAGAAAAATATGCTGATCCACAAGAGATGACTGGACACTCTCAAACGTGGTGTTGGACTTTATCAT i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56841119 89 - 109391073 --------------------------tttttatttt------ttttttCCAAATTCAGTATTGTAGAAAAATATGCTGCCCCAGAAGAGATGATTGGACA--------CATGGTGTTGGACTTTGTCAT i nomLeu3.chr12 C 0 C 0 s macFas5.chr1 125111571 111 - 227556264 ------------ttattttttttatgttttttttgt------ttttttCCAAATTCAGTATTGTAGAAAAATACGCTGCCCCAGAAGAGATTATTGGATACTCTCAAACGTGGTGTTGGACTTTGTCAT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98625895 104 - 220367699 -------------------gtttttctttttttttt------ttttccccaaattcagTATTATAGAAAAATTTGCTGCCCCAGAAGAGATGATTGGACACTCTCAAGCgtggtgttggattttgtcat i papAnu2.chr1 C 0 C 0 s chlSab2.chr20_KE148049v1_random 204686 111 + 1557941 ------------ttttttcttttatgtttttttttg------ttttttCCAAATTCAGTATTGTAGAAAAATATGCTGCCCCAGAAGAGATTATTGGACACTCTCAAACGTGGTGTTGGACTTTGTCAT i chlSab2.chr20_KE148049v1_random C 0 C 0 s calJac3.chr21 50452573 85 - 50472720 --------------------------------------------TTCTCCAAATTCAGCATTATAGAAAAATATGCTGCCCGAGAAGAGGTGACTGGACGCTCTCACGCATCGCGCTGGACTATGGCAC i calJac3.chr21 C 0 I 2081 e rheMac3.chr1 128374879 122 + 229590362 I a score=275729.000000 s hg38.chr1_KI270765v1_alt 72958 123 + 185285 CTCTTGCACAGCCATCTCCAGACCTTAGTGTTTACCTCACGTTAGTTTTTTATATTCTGCAAAGAC-AAAACCAAAATAATCCAAATTTGACACAAATACCTGGGATACATCTTATTTGAGATG s panTro4.chr1_GL389091_random 84765 123 + 179278 CTCTTGCACAGCCATCTCCAGACCTTAGTGCTTACCTCATGTTAGTTTTTTATATTCTGCAAAGAC-AAAACCAAAATAATCCAAATTTGACACAAATACTTGGGATACACCTTATTTGAGATG i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 11246520 122 + 72422247 CTCTTGCACAGCCATCTCCAGA-CTTACTGCATACCTCATGTTAGTTTTTTATATTCTGCAAAGAC-AAAACCAAAATAATCCAAATTTGATACAAATACCTGGGATACATCTTATTTGAGATG i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56841208 123 - 109391073 CTCTTGCACAGCCATCTCCAGACCTTAGTGCTTACCTCATGTCAGTTTTTTATATTCTGCAAAGAC-AAAACCAAAATAATCCAAATTTGACACAAATACTTGGGATACATCTTATTTGAGATG i nomLeu3.chr12 C 0 C 0 s macFas5.chr1 125111682 124 - 227556264 CTCTTGCACAGCCATCTCCAGACCTTAGTGCTTACTTCATGTTAGTATTTTATATTCTGCAAAGACAAAAATTAAAATAATCCAAATTTGACACAAATACCTGGGATACATCTTATTTGAGATG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98625999 123 - 220367699 cTCTTCCACAGCCATCTCCAGACCTTAGTGTTTACCTCATGTTAGTTTTTTATATTCtgcaaacac-aaaaccaaaataatcCAAATTTGACACAAATACCTGGGATCCATCTTATTTGTGATG i papAnu2.chr1 C 0 C 0 s chlSab2.chr20_KE148049v1_random 204797 124 + 1557941 CTCTTGCACAGCCATCTCCAGACCTTAGTGCTTACTTCATGTTAGTATTTTATATTCTGCAAAGACAAAAATTAAAATAATCCAAATTTGACACAAATACCTGGGATACATCTTATTTGAGATG i chlSab2.chr20_KE148049v1_random C 0 C 0 s calJac3.chr21 50454739 123 - 50472720 CTCCTGCACGGCCTTCTCCAGACCTCAGCACTTACTTCATGTTCGTATTTTATGTTCTGCAAAGAC-AAAAGCAAAACAATCCACATTTGGCACAAATACCTGAGATACATCTTATATGAGGTG i calJac3.chr21 I 2081 I 810 e rheMac3.chr1 128374879 122 + 229590362 I a score=19782.000000 s hg38.chr1_KI270765v1_alt 73081 8 + 185285 TTTAACAA s panTro4.chr1_GL389091_random 84888 8 + 179278 TTTAACAA i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 11246642 8 + 72422247 TTTAACAA i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56841331 8 - 109391073 TTTAACAA i nomLeu3.chr12 C 0 C 0 s macFas5.chr1 125111806 8 - 227556264 TTTAACAA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98626122 8 - 220367699 TTTAACAA i papAnu2.chr1 C 0 C 0 s chlSab2.chr20_KE148049v1_random 204921 8 + 1557941 TTTAACAG i chlSab2.chr20_KE148049v1_random C 0 C 0 s calJac3.chr21 50455672 8 - 50472720 TTTAACAA i calJac3.chr21 I 810 C 0 e rheMac3.chr1 128374879 122 + 229590362 I a score=1785989.000000 s hg38.chr1_KI270765v1_alt 73089 624 + 185285 ATGTCTGGATCATCTTTTCTTACATTGGATTATAACGCAGGAAACACTGTGAAGTAAGTAAAGTTGGAATTCCCAAGTCAAAGACCATTTGAATATTTACAAGTAGATTtgaggcaggaataatacagggtggccgcagggtaacaaattctaggcagcagatttacatgacttgaggctatgggctgataagacgctgaaaaaccagggtgtggaccaagctggctaagactgactggacccaatgtggtgctagatttgaggtaggttttacctaggccctcattatacacttattaacatactaaatcacacacccaccagtgccatgacagttctga---gaccaatatgtgatgtaaaaatggatggcaccacagttccgagaaat---cacctttacccaggaattttcacgaatattccactccttggttaaagaaacccattgagatgaaaccccagaacccattgt--tctctctcgggt--------atgcccgaactcccctttcttgagtgtgtactttctgctttgcaatacatctcttctttcactatttgctgactcatccttgacttggttctcgagatggtgtcaagagcctggacaccacagctggggtcgagatcccacca s panTro4.chr1_GL389091_random 84896 627 + 179278 ATGTCTGGATCATCTTTTCTTATACTGGATTATAACTCAGGAAACACTGTGAAGTAAGCAAAGTTGGAATTCCCAAGTCAAAGACCATTTGAATATTTACAAGTAGATTtgagacaggaataatacagggtggtcacaggctaacaaattctaggcagcagatttacatgacttgaggctatgggctggtaagatgctgaaaaaccagggtgtggaccaagctggctaagactgactggacccaaagtggtgctgtatttgacataggttttacctaggccctcattatatgctcattaacatactaaatcacacacccaccagtgccatgacagttctga---gactaatatttgatgtaaaaatggatggcaccacagttccgagaaatctccacctttacccaggaattttcatgaatattccactccttagttaaagaaacctatcgagatgaaaccccagaacccattgt--tctctcttgggt--------atgcccaaactcccctttcttgagtgtgtactttttgctttgcaataaatctcttcttttactatttgctaactcatccttgacttggttcttgagatgatgtcaagagcctggacactactgctgggttcgagatcccacta i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 11246650 621 + 72422247 ATGTCTGGATCATCTTTTCTTATA------TATTATGCAGGAAACACTGTGAAGTAAGCAAAGTTGGAATGCCCAAGTCAAAGACCACTTGAATATTTACAAGTAGATTtgagacaggaataatacagggtggtcacaggataacaaattctaggcagcagatttacatgacttgaggctatgggctgataagatgctgaaaaaccagggtgtggaccaagctggctaagactgactggacccaatgtggtgctggatttgatgtaggttttacctaggccctcattatatgctcattaacataataaatctcacatccaccagtgccatgtcagttctga---gactaatatttgatataaaaatggatggcaccacagttccgagaaatctccacctttacccaggaattttcatgactattccactccttggttaaagaaacctatcgagatgaaaccctagaacccattgt--tctctctcgggt--------atgcctgaacgcccctttcttgagcgtgtactttttgctttgcaataaatctcttctttcactatttgctaactcatccttggcttggttctctagatggtgtcaagagcctggacaccacagctggggtcgagatcccacca i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56841339 627 - 109391073 ATGTCTGGATCATCTTTTCTTATATTGGATTATAACGCAGGAAACACTGTGAAGTAAGCAAAGTTGGAATTCCCAAGTCAAAGACCATTTGAATATTTACAAGTAGATTtgagacaggaataatacagggtggttacaggataacaaattctaagcagcagatttacacgacttgaggctagggactaataagacgctgaaaaactggagtgtggaccaagctggctaagactgactggacccaatgtggtgctggatttgacgtaggttttacctaggccctcattatatgctcattaacatactaaatcacacacccaccagtgccatgacagttctga---gaccaacatgtgatataaaaatggatggcaccaccgttccgagaaatctccacctttacccaggaattttcatgaatattccactccttggttaaagaaaccaatcaagatgaaaccccagaacccattgt--tctgtctcgggt--------atgcctgaactcccctttcttgagtgtgtactttttgctttgcaataaatctcttctttcactgtttgttgactcatccttgacttcgttcttgagatggtgtcaagagtctggacaccacagctggggtcgagatgccacca i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128375001 624 + 229590362 ATGTCTGGATCATCTTTTCTTATATTGGATTACGGCGCAAGAAACACTGTGAAGTAAGCAAAGTTGGAATGCCCAAGTCAAAGACCATTTGAATATTTCCAAGTAGATTtgagacagaaataataccgagtggtcacaggataacaaattctaggcagcagatttacctgacttaaggttatgggctcataagacgctgaaaaacca--gtgtggaccaagctgggtaagactgactggacccaatgtggtgctggatttaatgtaggttttacctaggccctcactatatgctcattaacatactaaatcacacacccaccagtgccatgacagttctga---gaccaatgtttgatgtaaaaatggatggcgccacagttccgagacatctccacctttacccaggaattttcattaatattccactccattgttaaagtaacccatcaagatgaaaccccagaacccattgt--tctctctcgggt--------atgcatgaactccccttttttgagtgtgtactttttgctttgcaataaatctcttctttcactgtttgcggactcatccttgacttcattcttgagatggtatcaagagcctgacaaccatggctggggtcgagatcccacc- i rheMac3.chr1 I 122 C 0 s macFas5.chr1 125111814 633 - 227556264 ATGTCTGGATCATCTTTTCTTATATTGGATTATGGCGCAAGAAACACTGTGAAGTAAGCAAAGTTGGCATGCCCAAGTCAAAGACCATTTTAATATTTCCAAGTAGATTtgagacagaaataatacagggtggtcacaggataacaaattctaggcagcagatttacctgacttaaggctatgagctcataagacgctgaaaaacca--gtgtggaccaagctatctaagactgactggacacaatgtggtgctggatttgacgtaggttttacctaggccctcattttatgctcattaacatagtaaatcacacacccaccagtgccataacagttctga---gaccaatgtttgatgtaaaaatggatggcaccacagttccgagacatctccacctttatccaggaattgtcatgaatattccactccttggttaaagtaatccatcaagatgaaaccccagaacccattgt--tctctctcaaagagagaacaatgcccaaaatcccctttcctgagtgtgtactttttgctttgcaataaatctcttctttcactgtttgcggactcatccttgacttcattcttgagatggtgtcaagagcctggacaccacagctggggtcgagatcccacca i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98626130 625 - 220367699 ATGTCTGGATCATCTTTTCTTATATTGGATTACAATGTATGAAACACTGTGAAATAAGCAAAGTTGGAATGCCCAAGTCAAAgaccatttaaatatttacaagtaGATTTGAGACAGGAATAATACAGGGTGGTCACAGGATAACAAATTCTAGGCAGCAGATTTACCTGACTTGAGGCTATGGGCTGATAAGACGCTGAAAAACCA--ATGTGGACCAAGCTGTCTAAGACTGACCGGACCCAATGTGGTGCTGGATTTGATGTAGGTTTTACCTAGGCCCTCATTATATGCTCATTAACATACTAAATCACacacccaccagtgccatgacagttctGA---GACCAGTATTTGATGTAAAAATGGATGGCACCACAGTTCTGAGAAATCTCCACCTTTACCCAGGAATTGTTATGAATATTCCACTCCTTGGTTAAAGTAATCCATCAAGATGAAACCCCAGAACCCATTGT--TCTCTCTCGGGT--------ATGCCCGAACTCCCCTTTCTTGAGTGTGTACTTTttgctttgcaataaatctcttcTTTCACTGTTTGCTGACTCATCCTTGACTTCGTTCTGGAGATGGTGTCAAGAGTCTGGACACCATGGCTGGGGTCGAGATCCCACCA i papAnu2.chr1 C 0 I 5114 s chlSab2.chr20_KE148049v1_random 204929 624 + 1557941 ATGTCTGGATCATCTTTTCTTATATTGGATTACGGCGCAAGAAACACTGTGAAGTAAGCAAAGTTGGCATGCCCAAGTCAAAGACCATTTGAATATTTACAGGTAGATTtgagacaggaataatacagggtggtcacaggataacaaattctaggcagcagatttacctgacttaaggctatgggctcataagacgctgaaaaacca--gtgtggaccaagctgtctaagactgactggacccaatgtggtgctggatttgacgtaggttttacctaggccctcattatatgctcattaacatactaaatcacacacccaccagtgccataacagttctga---gaccaatgtttgatgtaaaaatggatggcaccacagttccgagacatctccacctttacccaggaatcgttatgaatattccactccttggttaaagtaatccatcaagatgaaaccccagaacgcattgt--tctctctcggat--------atgcccgaactcccctttcttgagtgtgtactttttgctttgcattaaatctcttctttcactgtttgcggactcatccttgacttcattcttgagatggtgtcaagagcctggacaccacggctggggtcgagatcccaca- i chlSab2.chr20_KE148049v1_random C 0 C 0 s calJac3.chr21 50455680 629 - 50472720 ATGCCTGGATTATCTTTCCTTATATTGGATGATAATGCAGAAAACACTGTGAAGTAAGC-AGGTTGGAAGGCCCAAGTCAAAGACCATTTGAATATTTACAAGGAGATTtgagacaggaatagtacagggcggtcacagga-aatgaattttaggcagcagatttacatgacttgaggctatgggcttataagatgttgaaaaactagggtgtagaccaagctggctgagactgactggaccccatgtggtgctggattcgatgtagatttcacctaggaccacactacatgctcattaacatactaaatcacacacccaccagtgccaggacagttctcactccaccaatatttcatataaaagtgagtggcatcacagttccaagaaagctccacctttacccaggacttttcatgagtattccactctgtgcttaaggaaacc-atcaagatgaaaccccagaccccattgtcctctctcttgggt--------ttgcccaaactcccctttcttgaatttgtaccttttgctttgcagtaaatctcttctttaaatatttactgactcatctttgacttccttcttgagatggtgtcaagaacctggacaccgcagctggggtcgagatcccacca i calJac3.chr21 C 0 C 0 a score=645871.000000 s hg38.chr1_KI270765v1_alt 73713 304 + 185285 gtgtccggggacctcccccagcccaccagtatcaGATTCTATTCCATTGCTCAAATCACAAAACATTgaatggagaggtctcctctggagag---------------cataaagtaaagattctgtggcatggtggccagttaggccactggaaggcatggcaaaatattgaaaatgagggattaggtgacggt---------atagtaactgctgaatactaaatacttgattcagaccccattccctggagactgacagagagacacatcgtccaggtagtagtggagaaatactttctgggtatctgaccagccttcgtggaaag s panTro4.chr1_GL389091_random 85523 304 + 179278 gtgtccgggaaccttccccagcccaccagtatcaGATTCTATTCCATTGCTCAAATCACGAAACATCAAAtggagagttatcctttgaagac---------------cataaagcaaagattctgtggcatggtggccagttagaccactggaagacatggcaaaatattgaaaatgagggattagatgacagt---------gcagtaactgctgaatgcaaaatacttgatccaggctccattccctggagactgaccgggagacacattgtccaggtagtagtggagaaatactttctgggtatctgaccagcctttgtggaaag i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 11247271 304 + 72422247 gtgtctggggaccttccccagcccaccagtatcaGATTCTATTCCATTGCTCAAATCATGAAACATCgaatggagagttctcctttgaagac---------------tataaaccaaagattctgtagcatagtggccagttagaccactggaagacatggcaaaatattgaaaatgagggattaggagatagt---------gcagtaactgctgaatgcaaaatacttgatccaggctccattccctggagactgactgggagacacattgcccaggtagtagtggagaaatactttctgggtatctgaccagcctttgtggaaag i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56841966 306 - 109391073 atgtccagggactttccccaggccaccagtatcaGATTCTATTCCATTGCTCAAATCACAAAACATCGAGTGCAGAGTTCTCCT-TGGAGAC---------------CAT-----AAAGATTCTGTGGCACTGCGG-CAGTTAGGCCACTGGAAGTCATGGCAAAATATTGAAAATGAGGGATTAGGTGACAGTGACAGTGTAGTAGTAACTGCTGAATACTAAATATTTGAGCCAGGCGCCATTCCCTGGATACTGACCAGGAGACACATTGTCCAGGTAGTAGTGGAGAGATACTTTCTGGGTATCTGACCAGCCTTTGTGGAAAG i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128375625 317 + 229590362 -tgtctggggacctcccccagcctaccagtatcaCATTCTATTCCATTGCTCAAATCACAAAATATCGAATGGGGAGTTCTCCT-TGGAGACCATCAAGTAAAGATTCATAAAGTAAAGATTCTGTGGCATGGTGGCCAGTCAGGCCACTGGAAGTTATGGAAAAATATTGAAAACAAGGGATTAGGTGACAGT---------ATAGTAACTACTGAATACTAAATACTAAAGCCAGGCCCCATTCCCTGGATAGTGACAGAGAGACACACGGTCCACGTAATAGTGGAGAAATACTTTCTGGGTATCTGACCAGCCTTTGTGGAAAG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 125112447 303 - 227556264 gtgtccggggacctcccctagcccaccagtatcaCATTCTATTCCATCGCTCAAATCACAAAATATCGAGTGGAGAGTTCTCCT-TGGAGAC---------------CATAAAGTAAAGATTCTGTGGCATGGTGGCCAGTCAGGCCACTGGAAGTCATGGAAAAATATTGAAAATGAGGGATTAGGTGACAGT---------ATAGTAACTGCTGAATACTAAATACTAAAGCCAGGCCCCATTCCCTGGAGACTGACAGGGAGACACACGGTCCACGTAATAGTGGAGAAATACTTTCTGGGTATCTGACCAGCCTTTGTGGAAAG i macFas5.chr1 C 0 C 0 s chlSab2.chr20_KE148049v1_random 205553 303 + 1557941 gtgtccggggacctcccccagcccaacagtatcaCATTCTATTCCATCGCTCAAATCACAAAATATCGAGTGGAGAGTTCTCCT-TGGAGAC---------------CATAAAGTAAAGATTCTGTGGCATGGTGGCCAGTCAGGCCACTGGAAGTCATGGAAAAATATTGAAAATGAGGGATTAGGTGACAGT---------ATAGTAACTGCTGAATACTAAATACTAAAGCCAGGCCCCATTCCCTGGATAGTGACAGGGAGACACACGGTCCACGTAATAGTGGAGAAATACTTTCTGGGTATCTGACCAGCCTTTGTGGAAAG i chlSab2.chr20_KE148049v1_random C 0 C 0 s calJac3.chr21 50456309 304 - 50472720 gtgtttggggacctcctgcagcccaccagtatcaGATTCTATTCCATTGCTCAAATCACAAATTATTGAGTGGTGAGTTCTCCTTTGGAGAT---------------CATAAAGCACAGATTCTGTGGCATGGTATCCAGTTAGGCCACTGGAAAACATGGCAAAATATTAAAAATGAGGGATTAGGTGACAGT---------GTAGCAACTGCTGAATACTAAATGCTTGATCCAAGCCCCATTCCCTGGACACTGACAGGGAGATGCATTGTCCAGGTAGCAGCAGAGAAATATTTTCTGGGTATCAGACCAGGCTTTGTGGAAAG i calJac3.chr21 C 0 N 0 e papAnu2.chr1 98626755 5114 - 220367699 I a score=3764770.000000 s hg38.chr1_KI270765v1_alt 74017 2169 + 185285 aactGGCACCATCCTGCAGGtgcaactgcctgatgggttcttcctgcccattgtacatacaaaatcaattcatggagaccatggcattgcagtaaagagtttaa-ttgacacaggccagccacgacatgtgggggacggagttattactcaaaacgatctcactgaaggcttggaggtaagggttttttcaaagacagtttggtggggagggggctagggcttgggcggtgctgattgttggggatgaaatcacaggggtgtggaaaat-gccctcctgcattgagtcagcttctgggtgggagctaagggactggttgatttgcgggccaaatggtgacatccagtagtcagaaatgcaaaagcctgaaaaggcatctcaagaggccagtcttaggttctgcaatagtgatgttcttcacagcagtaattggggaagctgcaaatcttgtgacctctggaataatggctggtaattatttaacgaggcatacatcttagtagaattcaggtccctttcatcctcctaacttggtggcctttcattagttttacaggggtaatttagttttggggaaggttatcatttaaacccacctttctggctgtccccaatgtttttggcaccagggactggtttcatggaagacaatttttccatggaagggg----------gtttccggatgaaactgttccacctcaggtcatcaggcattagttacagtctcataaggagtgtgcaatctgg-atccctcacatgcgcagttcccaacagggtccaagctccgacgagaatctaatgccgatgctgatctgacaagagtcggagctcaggtggtaatgctccaaagcctacagctcacctcctgccgtttggctgggttcctaacaggccatggaccagtacctgtcttgtggccctgggggttggggacccctgatttaaactataaactcaacttttcccaaagatagcttgggagaaattgcacaggaatgagcaaagacagctagcctgtgaggctagaaccaaaatggagtcagccatgtcagatttctctgattgtcataattttGCAAAAGTAGTTTCAGAGGGactac-cctgacacctgttaaaagcatgaggcgg-------------------------------attttattgtatgtactgcagtaggcaagagagaccagcagagaaccgagctcaactccaaatacagcaagaagggttgaagatttatagccaatcggcaaggtaagaaagtcagtggatggaaaattactaagaggaacttgattagctatcaaaggtggttggtaggactcttgctaaactaggctcgacggtattcttttctaaaactggacttgacaggccaagaactaatagagaaaagggctcagaggaaactgactaaggtttggtcaaagatggagtccttgtcaACTCTACATTGAAGCTTCtgcaaataaacgaagaccaaccaaat--g-aaaaaaagcaaaggctatttattctgagcttgctatggcagggagtcagccactgttacttgtgttttggcagagacttgaaggcagtcagaagggtggaaaagctttttaaaaggaaaggcttcaggtatgcttggactggaggctgtcagcatggtgaagctatagatagacgaa-aaaatcaaaatattttaccccagaatatatttctttggcatattttaagatggctgtcagagagccagcaaacagaagtaactctgcaaaactgtcttttgtaggggaaatttacacctgcagagaatctgcattaatccagccttcccttgtcaggattgagaaataaaaataagccctaggccctacaaccaactgaacggactcccctcttggctgacaggaccacagagaaaccttgaaagctgtttctggctgtgacaggataggaggtcggacatgccccccttaaaacccctccctcgctaaccgccatt-----atgaggcaggagaacagcagagggagttggaagttggataaaaggcagaatgagtaaaagcagaaacagaagcaaggtgatggggtgggagagcaagaagcaagataaaaggcagcagttgagcggccaaaacaaaaagtaagatt-aaaaaaagcaagcaaggccgggcgcagcccctcacccctgtaattccagcagtttgggaggccaaggcagg s panTro4.chr1_GL389091_random 85827 2173 + 179278 aactGGCACCATCCTGCAGAtgtaaccacctgatgggttcttcctgctcactgtacacacaaaatcaattcatggagaccatggcattggggtaaagagtttaa-ctgacacaggccagccatgacatgtgggggacagagttattactcaaatcaatctcactgaaggcttggaggtaaggggtttttcaaagacagtttggtggggagggggctaagtcttgggtggtgcttattgttgggaataaaatcacaggggtgtggaaaatggccctcctgcactgagccagcttctgggtggggactaagggactggttgatttttgggccaaatggtgccatccagtagtcagaaatgcaaaagcctgaagagacttctcaagaggccaatcttaggttctacaatagtgatgttcttcatagcagtaactggggaagctgcaaatcttgtgacctctggaataatgtctggtaattatttaacgaggcatatatcttacttgaattcaggtccctttcatcctcctaacttggtggtctttcgttagttttacaggggtaatttagttttggggaaggttatcattttaaccaacatttttggctgtccccattgtttttggcaccagggactggtttcatggaagaccatttttccatggaagggggtggtggatagtttccggatgaaaccgttccacctcaggtcatcaggcattagttagagtctcataaggagtgtgctatctgg-atccctcacacacgcagttcccaatagggtccaagctccgatgagcatgtaatactgatgctgatctgacaagaggcagagctcaggtggtaatgcttgaaagcctgcagctcacctcctgctgtttggctgggttcctaacaggccatggaccaatacctgtcttgtggtcctgggggttggggacccctgatttaaactataaactcaatttttcccaaaaatagcttgggcgaaattgcacaagaatgagcaaagacagctagcctgtgaggctagaaccaaagtggagtcagccatgtcagagttctcttattgtcataattttgcaaaggtagtttcaGAGGGACCACACAGgacacttgttaaaagcatgagacgg-------------------------------attttattgtatgtactacagtaggcaagagagaccagcagagaactgagctcaactccaaatacagcaagaacagttgaagatttatagccaataggcaagat---aaagtcagtggatggaaaattactaagaggaacttgattagctatcaaaggtggttgggaggactcttgctaaactaggctcaacaatattcttttctaaaactggacttggcaggccaagaactaatagagaaaagggctcagaggaaact-actaaggtttggtcaaagatggagtccttgtcaACTCTACATTGAAGCTTCtgcaaataaatgaagaccaaccaaat--g-aaaaaaagcaaaggctatctattctgagcttgctatagcagggagtcagccactgttacttgtgttttggc--agacttgaaggcagtcagaaaagtgggaaagctttttaaaaagaaaggcttcaggtatgcttcaactggaggctgtcagcgtggtgaagatgtagATAGAtgaa-aaaatcaaaatattttaccccagaatatatttaattggcatattttaagatggctgtcagagagccagcaaacagaagtaactctgcaaagctgtcttttataggggaaatttacacctgcagagaatctgcattaatccagccttcccttgtcaggattgagaaatacaaataaggcctaggccctacaaccaactgaacagact-ccctcttggctgacaggaccacagagaaaccttgaaagctctttctggctgtggcagggtaggaggtcagacatg-cccccttaaaacccctccctcactaactgccgtt-----atgaggcaggagaacagcagagggagttggaagttggctaaaaggcagaatgagtaaaagcagaaacagaagcaaggtgatggggtaggagagcaagaagcaagataaaaggcagaagttgagcagccaaaacaaaaagtaagatt-ttaaaaagcaagcaaggctgggcacagctgctcacatctgtaatgccagcagtttgggaggccaaggcagg i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 11247575 2176 + 72422247 aactGGCACCATCCTGCAGAtgtaaccacctgatgggttcttcctgcccactgtacatacaaaatcaattcatggagaccatggcattgaggtaaagggtttaa-ctgaaacaggccagccatgacatgtgggggacagagttattactcaaatcaatctcactgaaggcttggaggtaaggggtttttcaaagacactttggtggggaagaggctagggcttgggtggtgctgattgttggggatgaaatcataggggtgtggaaaatggccctcctacactgagccagcttctaggtgggggctaagggactggttgatttttgggccaaatggtgccatccagtagtcagaaatgtaaaagcctgaagagacatctcaagaggccaatcttaggttctacaatagtgatgttcttcacagcagtaattggggaagctgcaaatattgtgacctctggaataatggccggcaattatttaacaaggcacacaccttagtagaattcaggtccctttcatcctcctaacttggtggcctttcattagtgttacaggggtaatttagttttggggaaggttatcattttaaccaacatttttggctgtccccagtgtttttggcaccagggactggtttcctggaagacaatttttccatggaagggggtggtggatagtttctggatgaaaccattccacctcaggtcatcaggcattagttagagtctcataaggagtgcacaatctgg-atccctcacacgcgcagttcccaatagggtccaagctccaataagcatgtaatgctgatgctgatctgacaagaggcagagctcaggtggtaatgcttgaaagcctgcagctcacctcctgctgtttggctgggttcctaacaggccatggaccagtacctgtcttgtggccctgggggttggggacccctgatttaaactataaacccaatttttctcaaaaatagcttgggagaaattgcacaggaatgagcaaagacagctagcctgtgaggctagaaccaaagtggagtcagccatgttagatttctcttattgtcataattttGCAAAAGTAGTTTCTGAGGGACTACACAGgacacttgttaaaagcatgagatgg-------------------------------attttattgtatgtactacagtaggcaagagagaccagcagaaaaccgagctcaactccaaat-cagcaagaacagttgaagatttatagccaatcggcaagataagaaagtcagtggatggaaaattactaagaggaacttgattagctatcaaaggtggttgggaggactcttgctaaactaggctcaacaatattcttttctaaaactggacttggcaggccaagaactaatagagaaaagggctcagaggaacct-actaaggtttggtcaaagatggagtccttgtcaACTCTACATTGAAGCTTCtgcaaataaacgaagaccaaccaaat--gaaaaaaaaggaaaggctatttattctgagcttcctatagcagggagtcagccactgttacttgtgttttggcagagacttgaaggcagtcagaaaagtgggaaagctttttaaaaagaaaggcttcaggtatggttcgactggaggctgtcagcatggtgaagctgtagATAGAtgaa-aaaatcaaaatattttaccccagaatatatttcattggcatattttaagatggctgtcagagagccagcaaacagaagtaactctgcaaaactgtcttttataggggaaatttacacctgcagagaatctgcattaatccagccTTCCCTTGTCAGG--tgagaaatacaaataagccctagtccctacaaccaactgaacagact-ccctcttggctgacaggaccgcagagaaaccttgaaagctgtttctggctgtggcagggtaggaggtcagacatg-cccccttaaaacccctcccccactaactgccgtt-----atgaggcaggggaacagcagagggagttggaagtaggataaaaggcagaatgagtaaaagcagaaacagaagcaaggtgatggggtgggagagcaagaagtaagataaaaggcagaagttgggcagccaaaacaaaaagtaagatt-taaaaaagcaagcaaggccgggcacagccgctcacatctgtaatgccagcagtttgggaggacaaggcagg i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56842272 2173 - 109391073 AACTGGCACCCTCCTGCAGAtgtaactgcctgatgggttcttcctgcccactgtacatacaaaatcaattcatggagaccatggcattgaggtaaagagtttaa-ttgacacaggccagccacgacatgtgggggacagagttgttactcaaatcaatctcactgaaggcttggaggtaaaggg-ttttcaaagacaatttggtggggaaggggctggggcttgggcggtgctgactgttggggatgaaatcacaggggtgtggaaaatggccctcctgcactgagccagcttctgggtgggggctaagggactggttgattttcgggcccaatggtgccatccagtagtcagaaatgcaaacgcctgaaaagacatctcaagaggccaatcttaggttctacaatagtgatgttcttcacagcagtaattggggaagctgcaaatcttgtgacctccggaataatggctggtaattatttaacgaagcatacatcttagtagaattcaggcccctttcatcctcctaacttggtggcctttcattagttttacaggggtaatttagttttggggaa-gttatca-ttaaaccaac--ttttggctgtccccagtgtttttggcaccagggactggtttcatggtagacaatttttccatggaagggggtgttggatggtttccagatgaaactgttccacctcaggtcatcaggcattagttacagtctcataaggagtgcgcaatctgg-atccctcacacgcgcagttcccaatagggtctgagctccgatgataatctaatgccgatgctgatctgacaagaggcggagctcaggtggtaatgctccaaagcctgtagctcacctcctgctgttcaactgggttcctaacaggccatggaccagtacctgtcttgtggccctgggggttgggaacccctaatttaaactataaactcaatttttcccaaagatagcttgggagaaattgcacaggaatgagcaaagacagctagcctgtgaggctagaaccaagatggagtcagccatgtcagatttctctgattgtcataattttgcaaaggtagtttcTGAGGGACTACACTGgacacttgttaaaaacatcagacag-------------------------------gttttattgtatgtactacagtaggcaagagagaccagcagagaactgagctcaacctcaaatgcagcaggaagagttgaaga-ttacagccaattggcaagataagaaagtcagtggatggaaaattactaaaaggagcttgattagctatcaaaggtagttgggaggactcttgctaaactagactcaacagtattcttttctaaaactggacttgacaggccaagaactaatagagaaaaaggctcagaggaaact-actaaggtttggtcaaagatggagtccttgtcaACTCTACATTGAAGCTTCtgcaaataaacgaagaccaaccaaat--g-aaaaaaagcaaaggctattcattctgagtttgctatagcagggagtcagccactgttacttgtgttttggcagagacttgaaggcagtcagaagtgtgggaaagctttttaaaaagaaaggtttcaggtatgcttggactggaggctgtcagtatggtgaagctgtagATAGAtgaagaaaataaaaatattttaccccagaatatatttctttggcatattttaagatggctgtcagagagccagcaaacagaagtaactctgcaaaactgtcttttgtaggggaaatttacacctccagagaatctgcattaatccagccttcccttgtcaggattgagaaataaaaataagccctaggccctacaaccaactgaaccgact-ccctcttggctgacaggaccacagagaaaccttgaaagctgtttctggctgtgacaggataggaggtcagacatg-cccccttaaaacccctccctcactaactgccatt-----atgaggcaggagaacagcagagggaattggaagttggataaaaggcagaatgagtaaaggcagaaacagaagcaaggtgatggggtgggagagcaagaagcaagataaaaggcagaagttgagcagccaaaacaaaaagtaagatt-taaaaaagcaagcaaggccgggcacggtggctcacgcctgtaatccccgcattttgggaggccaagacggg i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128375942 2163 + 229590362 AACTGGCACCATCCTGCAGAtgtaactgactgatgggttcttcctgcccactgtacacacaaaatcaattcgtggagaccatggcattgcagtaaagagtttca-ttgacacaggccagccacaacctgtgggagacagagttactactcaaatcgatctcactgaaggcttggaggtaaggggtttttcaaagatagtttggtgggaagggggctagggtttgggcagtgctgattgttggggatgaaatcacaggagtgtgaaaaatggccctcctgcactgagtcagcttctgggtgggggctaagggactggttgattttcgggccaaatggtgccatccagtagtcagacatgcaaaagcctgaaaagacatctcaagaggccaatcttaggttctacaatagtgatgttcttcacagcagtaattggggaagctgcaaatcttgcgacctctggaataacggctgataattatttaacaaggcatacatcttagtagaattcaggcccctttcatccttctaacttggtggcctttcattagttttacaggggtaacttagttttggggaaggttatcatttaaacaaatctttttggctgttcccaacctttttggcaccagggactggtatcatggaagacaatttttccatagaagg-------ggatggtttctggatgaaactgttccacctcagttcatcaggcattagttacagtctcataaggagtgcgcaatctgg-atccctcacatgcgcagttcccaatagggtccgagctctgatgagaatctaatgcagatgtttatctgacaggaggcagagctcaggcggtaatgctccaaagcctgcagctcacctcctgctgtttggttgggttcctaacaggccatggaccagtacctgtcttgtgaccctgggggttggggatctctgatttagactaaaaacacaagttttcccaaagagtgcttgggagaaattgcacaggaatgagcaaagacagccagcctgtgaggctagaaccaagatggagtcagccatgtcagctttctcttattgtcacaattttgcaaaggtagtttcTGAGGGACTACACTGgacacttgttaaaagcatcagacag-------------------------------atcttattgtacgtactacagtaggcaagagagaccaacagagaactgagctcaacctcaaatacagcaggaagagtcgaaga-ttatagccagttggcaaggtaagaaagtcagtagatggaaaattactaagaggaacttgattagctatcaaaggtggttgggaggactcttgctaaactagactcaacagtactcttttctaaaactggacttggcaagcaaagaactaatagagaaaagggctcagaggaaact-actaaggtttggtcaaagatggagttcttgtcaACTCTACATTGAAGCTTCtgcaaataaacgaagaccaatcaaatggg-aaaaaaagcaaagtctatttattctgagcttgctatagcaggggatcagccactattacttgtgttttggcagagacttgaaggcagtcagaagggtgggaaagctttttaaaaagaaaggcttcaggtatgcttggactggacgctgtcagcatgatgaagctgtagATAGAtggagaaaataaaaatattttaccccagaatatatttctttggcatattttaagatggctgtcagagagccagcaaacagaagtaac-----------gtcttttgtaggggaaatttacacctggagagaatctgcattaatccagccttcccttgtcaggattgagaaataaaaataagccctaggccctacaaccaactgaaccgacc-ccttcttggctgagaggaccgcagagaaaccttgaaagctgtttctggctgtgacagaataggaggtcggacatg-cccccttaaaatcccttcctcactaactgccatt-----atgaggcaggagaacaggagagggaattggaagttcgataaaagacacaatgagtaaaggcacaaacagaagcaaggtgatggggcagaagagcaagaagcaagaaaaaaggcagaagttgagcagcgaaaacaaaaagtaagattaaaaaaaagcaagcaaggccgggtgcggtggtttactcctgtaatcccagtattttgggaggccaaggcagg i rheMac3.chr1 C 0 N 0 s macFas5.chr1 125112750 2207 - 227556264 AACTGGCACCATCCTGCAGAtgtaaccgcctgatgggttcttcctgcccactgtacacacaaaatcaattcgtggagaccatggcattgcagtaaagagtttcatttgacacaggccagccacaacctgtgggagacagagttactactcaaatcgatctcactgaaggcttggaggtaaagggtttttcaaagatagtttggtagggtgggggctagggtttgggcagtgctgattgttggagatgaaatcacaggggtgtggaaaatggccctcccgcattgagtcagcttctgggtgggggctaagggactggttgattttcgggccaaatggtgccatccagtagtcagacatgcaaaagcctgaaaagacatctcaagaggccaatcttaggttctacaatagtgatgttcttcacagcagtaattggggaagctgcaaatcttgcgacctctggaataacggctgataattatttaacaaggcatacatcttagtagaattcaggcccctttcatccttctaacttggtggcctttcattagttttacaggggtaatttagttttggggaaggttatcatttaaaccaacctttttggctgtccccaacctttttggcaccagggactggtttcatggaagacaattttttcatggaaggggatggtggatggtttcccgatgaaactgttgcacctcaggtcatcaggcattagttacagtctcgtaaggagtgtgcaatctggaatccctcacatgtgcagttcccaatagggtccgagctccgatgagaatctaatgccaatgctgatctgacaagaggtggagctcagggggtaatgctccaaagcctgcagctcacttcctgctgctcggctgagttcctaacaggccatggaccagtacctgtcttgtggccctgggggttgcagatccctgatttaaactataaacacaatttttcccaaagagagcttgggagaaattgcacaggaatgagcaaagacagccagcctgtgaggctagaaccaagatggagtcagccatgtcagctttctcttattgtcagaattttgcaaaggcagtttcTGAGGGACTACACTGgacagttgttaaaaacatcagacagattttattgtatgtactacagtaggcgacacattttattgtatgtactacagtaggcaagagagaccagcagagaactgagctcaacctcaaatacagcaggaagagttgaaga-ttatagccaattggcaagataagaaagttagtggatggaaaattactaagaggaacttgattagctatcaaaggtggttgggaggactcttgctaaactagactcaacagtactcttttctaaaactggacttggcaagcaaagaactaatagagaaaagggctcagaggaatct-actaaggtttggtcaaagatggagtccttgtcaACTCTACATTGAAGCTTCTGCaaata----aagaccaatcaaat--g-aaaaaaagcaaaggctatttattctgagtttgctataggagggagtcagtcactgttacttgtgttttggcagagacttgaaggcagtcagaagggtgggaaagctttttaaaaagaaaggcttcaggtatgcttggactggaggctgtcagcatggtgaagctgtagATAGAtgaagaaaatcaaaatattttaccccagaatatatttctttggcatattttaagatggctgtc----agccagcaaacagaagtaactctgcaaaactatcttttgtaggggaaattttcacctggagagaatctgcattaatccagccTTCCCTTGTCAGGATtgagaaataaaaataagccctaggccctacaaccaactgaaccgacc-ccctcttggctgacaggaccgcagagaaaccttgaaagctgtttctggctgtgacaggataggaggtcggacatg-cccccttaaaacccctccctccctaactgccattatgagatgaggcaggagagcagcagagggaattggaagttggat-aaaggcagaatgagtaaaggcagaaacagaagcaaggagatgtggcaggagagcaagaagcaagataaaaggcagaagttgagcagccaaaacaaaaagtaagatt-aaaaaaagcaagcaaggccaggcgcactggctcacgcctgtagtcccaacattttgggaggccaaggcagg i macFas5.chr1 C 0 C 0 s chlSab2.chr20_KE148049v1_random 205856 2210 + 1557941 AACTGTCACCATCCTGCAGAtgtaaccgcctgatgggttcttcctgcccactgtacacacaaaatcaattcatggagaccatggcattgcagtaaagagtttca-ttgacacaggcgagccacaacctgtgggagacagagttattactcaaatcaatctcactgaaggcttggaggtaaggggtttttcaaagatagtttggtgggaagggggctagggcttgggcagtgctgattgttggggatgaaatcacagggaagtggaaaatggcccttctgcactgagtcagcttctgggtgggggcaaagggactggttgattttcgggccaaatggtgccatccagtagtcagaaatgcaaatgcctgaaaagaaatctcaagagaccaatcttaggttctacaatagtgatgctcctcacagcagtaattggggaagctgcaaatcttgtgacctctggaataacggctgataattatttaacaagccatacatcttagtagaattcaggcccctttcatccttctaacttggtggcctttcattagttttacaggggtaatttagttttggggaaggttatcatttaaaccaacatttttggctgtccccaacctttttggcaccagggactggtttcatggaaaacaattctttcatggaaggggatggtggatggtttcccgatgaaactgttgcacctcaggtcatcaggcattagttagagtctcgtaaggagtgtgcaatctggaatccctcacatgtgcagttcccaatagggtccgagctccgatgagaatctaatgccaatgctgatctgacaagaggtggagctcagggggtaatgctccaaagcctgcagctcacttcctgctgttcggctgggttcctaacaggccatggaccagtacctgtcttgtggccctgggggttgcagacccctgatttaaactataaacacaatttttcccaaagagagcttgggagaaattgcacaggaatgagcaaagacagccagcctgtgaggctagaaccaagatggagtcagccatgtcagctttctcttattgtcagaattttgcaaaggcagtttcTGAGGGACTACACTGgacagttgttaaaaacatcagacagattttattgtatgtactacagtaggcgacagattttattgtatgtactacagtaggcaagagagaccagcagagaactgagctcaacctcaaatacaacaggaagagttgaaga-ctatagccaattggcaagataagaaagttagtggatggaaaattacaaagaggaacttgattagctatcaaaggtggttgggaggactcttgctaaactagactcaacagtactctttcctaaaactggacttggcaggctaagaactaatagagaaaagggctcagaggaatct-actaaggtttggtcaaagatggagtccttgtcaACTCTATATTGAAGCTTCTGtaaata----aagaccaatcaaat--g-aaaaaaagcaaaggctatttattctgaacttgctataggagggagtcagtcactgttacttgtgttttggcagagacttgaaggcagtcagaagggtgggaaagctttttaaaaagaaaggcttcaggtatgcttggactggaggctgtcagcatgatgaagctgtaggtagAtgaagaaaatcaaaatattttaccccagaatatatttctttggcatattttaagatggctgtcagagagccagcaaacagaagtaactctgcaaaactgtcttttgtaggggaaattttcacctggacagaatctgcattaatccagcGTTCCCTTGTCAGGATtgagaaataaaaataagccctcggccctacaaccaactgaaccgacc-ccctcttggctgacaggaccgcagagaaaccttgaaagctgtttctggctgtgacaggttaggaagtcggacatg-cccccttaaaacccctccctcactaactgccattatgagatgaggcaggagagcagcagagggaattggaagttggat-aaaggcagaatgagtaaaggcagaaacagaagcaaagtgatgtggcaggagagcaagaagcaagataaaagggagaagttgaacagccaaaacaaaaagtaagatt-aaaaaaagcaagcaaggccaggcacactggctcacgcctatagtcccaatattttgggaggccaaggcagg i chlSab2.chr20_KE148049v1_random C 0 C 0 e papAnu2.chr1 98626755 5114 - 220367699 I a score=573043.000000 s hg38.chr1_KI270765v1_alt 76186 510 + 185285 tggatcgcccgaggtcaggagttcgagaccagcctgaccaatgtagtgaaaccccttctctactaaaaatac-aaaaaaatagctgggcatggtggtacactcctgtactcccagctactcaggaggctgagacaggagaattgcttgaacccaggaggcagaggttgcagtgagccaagatcgtgccactgcactccagactgggcaacagagcgagaccctgtcttaaa-----aaaaaaaaaaa-------agcaagtaaggaccc--catggccagcaagatccaaaccaggaaaggggcagctcttcagagacaggcatgtgcattagag-agaaaaagtatccttaacatgacttcatatgataatcagctcattaaagctcatgcatacagactgcatatcatgcatgtacttaaaattatgggatggaagcagcattcaagcacacaagggccaaagtaactaagcaacccacctatcaatcaaaaggcaaagagtggctaaagattaggcatccttg s panTro4.chr1_GL389091_random 88000 512 + 179278 cggatcgcctgaggtcaggagttcgagaccagtctgaccaacatagtgaaaccccttctctactaaaaatacaaaaaaaatagcgaggcatggtggtgcactcctgtactcccagctactcaggaggctgagaca-gagaattgcttgaacccaggaggcagaggtggcagtgagccaagattgcaccactgcactccagactgggcaacagagcaagaccctgtcttaaa-----aaaaaaaaaaac-----tagcaaggaaggaccc--catggccagcaagatccaaaccaataaaggggcagctcttcagagacagtcacgtgcattagag-agaaaaagaatccttaacatgacttcatatgataatcagatcattaaagctcatgcatatggactgcatatcttgcatgtacttaaaattgtgggatgcaggcaacattcaagcacgcaagggccaaagtaactaagcaacccacctatcaatcaaatggcaaaccctggctaaaaactaggcatccttg i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 11249751 510 + 72422247 tggatcgcctgaggtcaggagttcgacaccagtctgaccaacatagtgaaaccccttctctactaaaaatac-aaaaaaatagtaaggcatggtggtgcattcctgtagtcccagctactcagttggctgagacaggagaattgcttgaacccaggaggcagaggttgcagtaagccaagatcgcaccactgcactccagactggacaacagagcaagaccctgtcttaaa-----aaaaaaaaact-------agcaagcaaggaccc--catggccagcaagatccaaaccaataaaggggcagctcttcagagataggcatgtgcattagag-agaaaaagtatccttaacatgacttcatatgataatcagctcattaaagctcatgcatatggactgcatatcatgtctgtacttaaaattatgggatggaggcaacgttcaagcacacaggcgccaaagtaactaagcaacccacctatcaatcaaatggcaaaccctggctaaagactaggcatccttg i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56844445 513 - 109391073 tggatcgcctgaggtcaggagtttgagatcggcctggccaacatggcgaaaccccatctctactaaaaatac--aaaaattagctgggtgtggtggtgcactcctgtactccaggctactcaggaggctgagacaggaacattgcttgaacccaggaggcggaggttgcagtgagctgagattgcacgaccacactccagactgggcaacagagagagattctgtctcaaa-----aaaaaaaaaaa------tagcaagcaaggaccccacattgctggcaagatccaaagcagtaaaggggcagctcctcagagatagacatgtgcattcaagaaaaaaaagtatccttaacatgactccatatgataatcagctcattaaaactcatgcatatggactacatatcatgcatgtacttaaaattatgggatggagacaatgtgcaagcacacaagggccaaagtaactaagcaacctacatatcaatctaaaggcaaacactggctaaagattaggcatccttg i nomLeu3.chr12 C 0 C 0 s macFas5.chr1 125114957 521 - 227556264 tagatcgcctgaggtcaggagtttgagatcagcctggcctacatggcgaaacgccagctccactaaaaatac-aaaaaattagctgggcgtggtggtgcactcctgtactccagactacccaggaggctgagacaggagcattgctagaacctgggaggcagaggttgcagtgagctgagattgcgccactacactccagactgggcaacagag-gcgactctgtctaaaacaaagaaacaaacaaacaaacaaaggaagcaaggaccc--cattgctggcaagatccaaaccagtaaaggggcagctcctcagagatagacatgtgcattcgag-aaaaaaagtatccttaacatgactctatatgataatcagctcattaaaactcaggcatatggactgcataccatgcatgtacttaaaattatgggatggaggcaacatgcaagcacacaagcgccaaagtaactaagcaacccacctatcaatctaaaggcgaacaatggctaaagattaggcatccttg i macFas5.chr1 C 0 I 211 s chlSab2.chr20_KE148049v1_random 208066 518 + 1557941 tagatcgcctgaggtcaagagtttgagatcagcctggccaacatggcgaaatgccacctccactaaaaatac-aaaaaatgagctgggcgtggtggtgcactcctgtactccaggctactcaggaggctgagacaggagcattgctagaacctgggaggcagaggttgcagtgagctgagattgcgccactacactccagactgggcaacagag-gcgactctgtctaaaac----aaacaaacaaacaaacaaagcaagcaaggacct-gcattgctgtcaagatccaaaccagtaaaggggcagctcctcagagatagacatgtgcattcgag-aaaaaaagtatccttaacatgactctatatgataatcagctcattaaaactcaggcatatggactgcataccatgcatgtacttaaaattatgggatggaggcaacatgcaagcacacaagcgccaaagtaaccaagcaacccacctatcagtctaaaggcaaacaatggctaaagattacgcatccttg i chlSab2.chr20_KE148049v1_random C 0 I 222 e papAnu2.chr1 98626755 5114 - 220367699 I a score=600.000000 s hg38.chr1_KI270765v1_alt 76696 1 + 185285 g s panTro4.chr1_GL389091_random 88512 1 + 179278 g i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 11250261 1 + 72422247 g i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56844958 1 - 109391073 g i nomLeu3.chr12 C 0 I 207 e chlSab2.chr20_KE148049v1_random 208584 222 + 1557941 I e papAnu2.chr1 98626755 5114 - 220367699 I e macFas5.chr1 125115478 211 - 227556264 I a score=130078.000000 s hg38.chr1_KI270765v1_alt 76697 547 + 185285 ccgggcacagtggctcacgcctgtaatcccagcactttgcgagaccaaggcgggcggatcgtgaggtcgggagatcgagaccatcctggctaacacggtgaaaccacgtctctactaaaaatacaaaaaaattagtcgggcgtggtggcaggcgcctgtagtcccagctgctggggaggctgaggcaggagaatggcatgaacccgtgaggcagagcttgcagtgagccaggatcgtgccactgcactccagcctgggtgacagagcgagactccgcctcatcaaacaaacaaacaaacaaacaaacaaacaaacaaacacagtaggcatccttgtgaagagaaggaaaaacacacacacaaacacaaaagaccccaagtacaccaaactaatactgatctcatctcccagaggtcagcccaccctccccactctgagagtgttactgtgcttaataaacttttgctttgctttgctgctttgtgtgtgtcatgtacagttctttgtttgggacaccaagagcctggaactgcacggcaccagctgg s panTro4.chr1_GL389091_random 88513 542 + 179278 ccgggcgcggtggctcacacctgtaatcccagcactttgcgaggctgaggtgggtggatcatgaggtcaggagatcaagaccaccctggctaacacggtgaaaccccatctctactaaaaatacaaaaaaattagccagacgtggtggcaggcgcctgtagtcccagctgctggggaagctgaggcaggagaatagtgtgaacctgggaggcagagcttgcagtgagccgggatcgtgccactgcactccagcctgggtgacagagcaagactccgtctcgaaaaaaaaaaaaaaaaattaaaaaattagaaaataaagat--taggcatccttgtgaagagaagaaaaaaaagctacacata---aaaagacccaaaatacaccaaactaatactgctctcatctcccagaggtcagcccactctccccactctgagaatgttactgtgcttaataaacttttgctttgctttgctgctttgtgtgtgtcatgtagagttctttgtttaggacaccaagagcctggaactgcacggtaccatctgg i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 11250262 538 + 72422247 cctggcgtggtggctcacgcctgtaatcccagcactttgtgaggctgaggtgggcggatcatgaggtcaggagatcgagaccaccctggctaacacggtgaaaccccatctctactaaaaatacaaaaaaattagccgggtgtggtggcaggcacctgtagtcccagctgctggggaggctgaggcaggagaatggtgtgaacctgggaggcagagcatgcagtgagccaggatcgtgccactgcactccagcctgggtgacagagcaagactccatctcaaaaaaaaaaaaaaaaaaaagaaaaa----gaaaaaaagat--taggcatccttgtgaagagaagaaaaaaaagccacacata---aaaagacccaaagtacaccaaactactactgctctcatctcccagaggtcagcccactctccccactctgagagtgttactgtgcttaataaacttttgctttgctttgctgctttgtgtgtgtcatgtagagttctttgtttgggacaccaaaagcctgaaactgcacggtaccatctgg i ponAbe2.chrUn C 0 C 0 e chlSab2.chr20_KE148049v1_random 208584 222 + 1557941 I e papAnu2.chr1 98626755 5114 - 220367699 I e macFas5.chr1 125115478 211 - 227556264 I e nomLeu3.chr12 56844959 207 - 109391073 I a score=123411.000000 s hg38.chr1_KI270765v1_alt 77244 259 + 185285 taagaattaggcttttttggccgggcgcggtggcttatgcctgtaatcccagcactttgcgaggccaaggcgggcggatcacgaggtcaggaaatcgagaccatcctggctaacacggtagaaccccatctctactaaaaataa-aaaaaattagccgggcgtggtggcgggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcctgaacccgggaggcggagcttgcagtgagccgagatcgcgcc s panTro4.chr1_GL389091_random 89055 259 + 179278 taaGAATTAGCCTTTTTTggccgggcgcggtggctcacgcctgtaatcccagcactttgcgaggccgaggtgggcggatcacgaggtcaggaaatcaagaccatcctggctaacatggtaaaaccccatctctactaaaaatac-aaaaaattagccaggcgtggttgcagacgcctgtagtcccagctactcaggaggctgaggcaggagaatggcctgaacccgggaggcggaacttgcagtgagccaagatcacgcc i panTro4.chr1_GL389091_random C 0 I 22574 s ponAbe2.chrUn 11250800 259 + 72422247 taagaattaggcttttttggccgggtgcagtggctcacgcctgtaatcccagcactttgcgaggcagaggcgggcagatcacgaggtcaggaaatcaagaccatcctggctaacacggtaaaaccccatctctactaaaaatac-aaaaaattagctgggcttggtggcggacacctgtagtcccagctactcaggaggctgaggcaggagaatggcctgaacccgggaggcggagcttgcagtgaaccaagatcacgcc i ponAbe2.chrUn C 0 I 22470 s papAnu2.chr1 98631869 260 - 220367699 TAAAGATTAGACATctttggcctggcgtggtggctcacgcctgtaatcccagctctttgggaggccgaggcaggtagatcacaaggtcaggagatccagaccattctggctaacaaggtgaaacccagtctctactaaaaacacaaaaaaattagccgagcattgtagcaggcgcctgtagtcccagctactcggtaggctgaggcaggagaatggcgtgaacctgggaggcgaagtttgcagtgagccaagatcgcgcc i papAnu2.chr1 I 5114 C 0 e chlSab2.chr20_KE148049v1_random 208584 222 + 1557941 I e macFas5.chr1 125115478 211 - 227556264 I e nomLeu3.chr12 56844959 207 - 109391073 I a score=4072.000000 s hg38.chr1_KI270765v1_alt 77503 61 + 185285 actgcactccagcctgggcaacagagagagactccgtctcaaaaaaaaaaaaaaaaaaaaa s papAnu2.chr1 98632129 53 - 220367699 actgcactccagcctgggcgacagagcgagactccgtctcaaaaaaaaaaaaa-------- i papAnu2.chr1 C 0 C 0 e chlSab2.chr20_KE148049v1_random 208584 222 + 1557941 I e ponAbe2.chrUn 11251059 22470 + 72422247 I e macFas5.chr1 125115478 211 - 227556264 I e nomLeu3.chr12 56844959 207 - 109391073 I e panTro4.chr1_GL389091_random 89314 22574 + 179278 I a score=5877.000000 s hg38.chr1_KI270765v1_alt 77564 13 + 185285 aagaattaggctt s panTro4.chr1_GL389091_random 111888 13 + 179278 aaGAattaggatt i panTro4.chr1_GL389091_random I 22574 C 0 s nomLeu3.chr12 56845166 13 - 109391073 aagaattaggatt i nomLeu3.chr12 I 207 C 0 s macFas5.chr1 125115689 11 - 227556264 aagaattagga-- i macFas5.chr1 I 211 C 0 s papAnu2.chr1 98632182 9 - 220367699 --gaattaggc-- i papAnu2.chr1 C 0 C 0 e chlSab2.chr20_KE148049v1_random 208584 222 + 1557941 I e ponAbe2.chrUn 11251059 22470 + 72422247 I a score=745510.000000 s hg38.chr1_KI270765v1_alt 77577 451 + 185285 tttttttccctaagggttaacaacaaaccagccctttggaaagacttgcttcaccactgttaccaaccaacggcctgatgcttttcctcagttttgtgatgttgacaaaacaagcaagcagcattccctcctgataagagaccaccgacctaggaatgattctggccagactagagaggatgcacagtgagggttttcatgtcctctgcttcagcttttgatgtcagagggccacaatctccactctcagatgattgctaatgccaccattttatgaacatgggccccatggagaggcacgaagctcaattgcacttctgcacatttttcctcctataaatattGCTATTGGAATATTATTTGGTACGGCTCCCGTGAAAGATACATTTGCAGAATGTACTCAAATTAGAAGCATCATGTAAACCCTATAATGTAGCAATAGTGCATCAAC s panTro4.chr1_GL389091_random 111901 446 + 179278 tttttt--cctacgggttaacaac---ccaactctttggaaagatttgcttcactactgttatcaaccaacggcctgatactttccctgccttttgtggttttgacaaaacaagcaagcagcattccctcctgataagagaccaccgacctaggaatgattctggccagcctacagaggatgtacagtgagggttttcatgtcctctgcatcagcttttgatgtcagagggccacaaactccactctcagatgattgctaatgccaccattttatgaacatgtactccatggagaggcacgaagctcaattgcacttctgcacatttttcctcttataaatattgatATTGGAATACTATTTGGTATTGCTCCCATGAAAGATACATTTGCAGAATGTACTCAAATTAGAAGCATTATATAAACACTATAAAGTAGCAATGGTGCATCCAG i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 11273529 426 + 72422247 ttttttttcctaagggttaacaaa---ccaactctttggaaagacttgcttcactactgttatcaaccaacggcctgatactttccctcccttttgtggttttgacaaagcaagcaagcagcattccctcctgataagagaccaccgacctaggaatgattctggccagactacagagg-tgtacagtgagggttttcatgtcctctgcatcagctttttatgtcagagggcctcaaactccactcccagatgattgctaatgccaccattttatga---------------------acgaagctcaattgcacttctgcacatttttcctcttataaatattgatATTGGAATACTATTTGGTATTGCTCCCATGAAAGATACATTTGCAGAATGTACTCAAATTAGAAGCATTATATAAACACTATAATGTAGCAATGGCGCATCCAG i ponAbe2.chrUn I 22470 C 0 s nomLeu3.chr12 56845179 447 - 109391073 -tttttttcccaagggttaacaaa---cttactctttggaaagacttgcttcactactgttatcaaccaacagtctgatactttccctcccttttgtggttttgacaaagcaagcaagcagcattccctcctgttaagagaccaccgacctaggaatgattctggccagactacagaggatgtacaatgagggttttcatgtcttctgcttcagcttttgatgtcagaggaccacaaactgcactctcagatgattgctaatgccaccattttatgaacatgggccccatggagaggcataaagctcaattgcacatctgcacatttttcctcttataaatattcatATTGGAATATTATTTGGTACTGCTCCCATGAAAGATACATTTGCAGAATGTACTCAAATTAGAAGCATTATATAAACACTATAATGTAGCAGTGGTGCATCCAG i nomLeu3.chr12 C 0 I 292 s macFas5.chr1 125115700 443 - 227556264 cttttttccctaagggttaacaaa---ccaactctttggaaagacttgcttcactactgttatcaaccagcagcctgatactttccctgccttttgtggttttgacaaagcagccaagcagcatttcctcctggtaagagaccaccgacctaggaatgattctggccagactacagaggatgtgcagtgagggttttcatgtcctctgcttcagcttttgatgtcagagggctgcaaactccactctcagata---gctaatgccaccattttatgaacagggtccccatggagaggcacgaaactcaattgcacatctgcacg--tttcctcttataaatattcatATTGGAATATTATTAGGTATTGCTCCAGTGAAAGATACATTTGCAGAATGTACTCAAATTAGAAGCATTATATAAACACTATAATGTAGCAATGGTGCATTCAG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98632191 444 - 220367699 tttttttCCCTAAGGGTTAACAAA---CCAGCCCTTTGGAAAGACTTGCTTCACCACTGTTATCAACCAACACCCTGATACTTTCCCTCCCTTCCGTGGTTTTGACAAAGCAAGCAAGCAGCATTCCCTCCTGATAAGAGACCGTTGACCTAGGAATGATTCTGGCTAGACTACAGAGGATGTACAGTGAGGG-TTTCATGTCCTCTGCTTCAGCTTTTGATGTCAGAGGGCCACAAACTCCACTCTCAGATA---GCTAATGCCACCATTTTATGAACATGGGCCCCATGGAGAGGCACGAAGCTCAATTGCACATCTTCCCATTTTTCCtcttataaatattcatattggAATATTATTAGGTATTGCTCCCGTGAAAGATACATTTGCAGAATGTACTCAAATTAGAAGCGTTATATAAACACTATAATGTAGCAATGGCGCATCCAG i papAnu2.chr1 C 0 C 0 s chlSab2.chr20_KE148049v1_random 208806 445 + 1557941 tttttttccctaagggttaacaaa---ccaactctttggaaagacttgcttcactactgttatcaaccagcaacctgatactttccctgccttttgtggttttgacaaagcagccaagcagcatttcctcctgataagaggccaccgacctaggaatgattctggccagactacagaggatgtgcagtgagggttttcatgtcctctgcttcagcttttgacgtcagagggccgcaaactccactctcagata---gctaatgccaccattttatgaacatgggccccatggagaggcacgaaactcaattgcacatctgcacatgtttcctcttataaatattcatATTGGAATATTATTAGGTATTGCTCCCGTGAAAGATACATTTGCAGAATGTACTCAAATTAGAAGCCTTATATAAACACTATAATGTAGCAATGGCGCATCCAG i chlSab2.chr20_KE148049v1_random I 222 C 0 a score=214273.000000 s hg38.chr1_KI270765v1_alt 78028 133 + 185285 TTCCCTACACTATAGAAATATCTGCGGTGTAGACATTTCCACAATGACCAAAGACATGTGTACAAGAAAGGTGGCTGCAGCATTCTTTGTAATCCTAAAACAATGAAACCTACCTCATCTCAAAAACtttatt s panTro4.chr1_GL389091_random 112347 125 + 179278 TTCTCTACACTATAGAAATATCTATGGTGTagacatttccacaatgaccaaagatatgtgtacaaggatggtgactgcagcattctttgtaatcctaaaaccatgaaaccaacctCATCt--------ttttt i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 11273955 120 + 72422247 TTCTCTACACTATAGAAATATCTGTGGTGTAGACATTTCCACAAtgaccaaagatatgtgtacaagaatggtgactgcagcattctttgtaaccctaaaaccatgaaaccaacctCATCt------------- i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56845918 133 - 109391073 TTCTCTACACTATACAAATATCTGCAGTGTAGACATTTCCACAACGACCAaagatatgtgtacaagaatggtgactgcagcattctttgtaatcctaaaaccatgaaaccaaccTCATCCCAAAAACATGttt i nomLeu3.chr12 I 292 C 0 s macFas5.chr1 125116143 127 - 227556264 TTCTCTACACTATAGAAATATCTGCGGTGTAGACATTTCCACAATGACcaaagatatgtgtaccagaatagtgactgcagcattctttgtaatcctaaaaccatgaaaccaacctCATCCCAAAAAC------ i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98632635 133 - 220367699 TTCTCTACACCATAGAAATATCTGCGGTGTAGACATTTCCACAATGACCAAAGATATGTGTACAAGAATGGTGGCTGCAGCATTCTTTGTAATTCTAAAACCATGAAACCAACCTCATCccaaaaacattttt i papAnu2.chr1 C 0 I 589 s chlSab2.chr20_KE148049v1_random 209251 127 + 1557941 TTCTCTACACGATAGAAATATCTGCGGTGTAGacatttccacaatgaccaaagatatgtgtacaagaatagtgactgcagcattctttgtaatcctaaaaccatgaaaccaacctCATCCCAAAAAC------ i chlSab2.chr20_KE148049v1_random C 0 C 0 a score=-1777.000000 s hg38.chr1_KI270765v1_alt 78161 6 + 185285 ttttta s panTro4.chr1_GL389091_random 112472 6 + 179278 tttttt i panTro4.chr1_GL389091_random C 0 C 0 s nomLeu3.chr12 56846051 4 - 109391073 tctt-- i nomLeu3.chr12 C 0 C 0 s macFas5.chr1 125116270 1 - 227556264 -----A i macFas5.chr1 C 0 C 0 s chlSab2.chr20_KE148049v1_random 209378 1 + 1557941 -----A i chlSab2.chr20_KE148049v1_random C 0 C 0 e ponAbe2.chrUn 11274075 0 + 72422247 C e papAnu2.chr1 98632768 589 - 220367699 I a score=80342.000000 s hg38.chr1_KI270765v1_alt 78167 54 + 185285 tttttattttttttttgagatggagtctcgctctgttgcccaggcgggagtgta s panTro4.chr1_GL389091_random 112478 54 + 179278 ttttttttttttttttgagatagagtcatactctgttgcccaggctcaagtgta i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 11274075 49 + 72422247 -----tttttttttttgagatacagtcacactctgttgtccaggctggagtgta i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56846055 49 - 109391073 -----tttttttttttgagatggagtcacactctgttgctaaggctggagtgta i nomLeu3.chr12 C 0 C 0 s macFas5.chr1 125116271 51 - 227556264 ---ttttttttcttttgagatagagtcacactctgttgcccaggctggagtgta i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98633357 54 - 220367699 ttttctttttttttttgagatggagtctcattctgttgcccaggctggagtgta i papAnu2.chr1 I 589 C 0 s chlSab2.chr20_KE148049v1_random 209379 51 + 1557941 ---ttttttttcttttgagatagagtcacactctgttgcccaggctggagtgta i chlSab2.chr20_KE148049v1_random C 0 I 16 a score=722.000000 s hg38.chr1_KI270765v1_alt 78221 5 + 185285 gtggt s panTro4.chr1_GL389091_random 112532 5 + 179278 gccat i panTro4.chr1_GL389091_random C 0 I 7 s ponAbe2.chrUn 11274124 5 + 72422247 gtgat i ponAbe2.chrUn C 0 I 7 s nomLeu3.chr12 56846104 5 - 109391073 gcgat i nomLeu3.chr12 C 0 C 0 s macFas5.chr1 125116322 2 - 227556264 ---ta i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98633411 5 - 220367699 gtggt i papAnu2.chr1 C 0 C 0 e chlSab2.chr20_KE148049v1_random 209430 16 + 1557941 I a score=-2436.000000 s hg38.chr1_KI270765v1_alt 78226 23 + 185285 gcagcctccactggtgcagcctc s nomLeu3.chr12 56846109 8 - 109391073 ----------ct----cagctt- i nomLeu3.chr12 C 0 C 0 s macFas5.chr1 125116324 12 - 227556264 ccgatctgagct----------- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98633416 12 - 220367699 gcgatctcggct----------- i papAnu2.chr1 C 0 C 0 e chlSab2.chr20_KE148049v1_random 209430 16 + 1557941 I e ponAbe2.chrUn 11274129 7 + 72422247 I e panTro4.chr1_GL389091_random 112537 7 + 179278 I a score=1190.000000 s hg38.chr1_KI270765v1_alt 78249 2 + 185285 ca s panTro4.chr1_GL389091_random 112544 2 + 179278 ca i panTro4.chr1_GL389091_random I 7 C 0 s ponAbe2.chrUn 11274136 2 + 72422247 ca i ponAbe2.chrUn I 7 C 0 s nomLeu3.chr12 56846117 1 - 109391073 -a i nomLeu3.chr12 C 0 C 0 s macFas5.chr1 125116336 2 - 227556264 cc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98633428 2 - 220367699 ca i papAnu2.chr1 C 0 C 0 e chlSab2.chr20_KE148049v1_random 209430 16 + 1557941 I a score=42406.000000 s hg38.chr1_KI270765v1_alt 78251 23 + 185285 ctgcagcctccacctcccaggtt s panTro4.chr1_GL389091_random 112546 23 + 179278 ctgcagcctccacctcccaagtt i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 11274138 23 + 72422247 ctgcagcctccacctcccaagtt i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56846118 23 - 109391073 ctgcagcctccacctgccaagtt i nomLeu3.chr12 C 0 C 0 s macFas5.chr1 125116338 23 - 227556264 ctgcagcctccacctcccaagtt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98633430 23 - 220367699 ctgcagcctccacctgccaggct i papAnu2.chr1 C 0 C 0 s chlSab2.chr20_KE148049v1_random 209446 23 + 1557941 ctgcagcctccacctcccaagtt i chlSab2.chr20_KE148049v1_random I 16 C 0 a score=1032430.000000 s hg38.chr1_KI270765v1_alt 78274 466 + 185285 caaatgattctcctgcctcagaatcccaagtacctgggattacaggcacatgcccccatgcctggctaaCAAAAACATTTTGAAAAGGGTTAAATAAATCATGCACAAACTGAGGAAAAATACTCTTTTTCAAAAATGATGGAGAGGATCACTATGATGATGAATGATTCCACTGGTCACATTATTGATAGAGCAATCAGTAAATCCAGGCACATCCTCGGGATATTACT-GACCTCCTATTATTAACATATG-AAAAAATGAAGGCATGTAAATTACTCGTTTAAGCGTATAACGGACTGAATTAGAATTTTATCACACCAGAAGTGGGTTCCTAGGTCTCTGTTTCAGGATTCCTGAGTTACACACGTATAAACCCAGGATTTCAGGAGATACCCGGTTAAGAATCCGGTTGGGGAGGT------------------------------------------GGGCTGGCCCTTGACATGGATAAGTCACAAATTAGTGGCTTAGGACT s panTro4.chr1_GL389091_random 112569 506 + 179278 caaatgattctcctgcctcagcctctccagtagctgggattacccaggcctgccaccacgcctggctaaCAAAAACATTTTGAAAAGGGTTAAATAAATAATGCACAAACTGAGGAAAAATACTGTTTT-CAAAAATGATGAAGAGGATCACTATGATGATGAATGATTCCACTGGTCACATTATTGATAGAGCAATCAGTAAATCCAGGCACATCCTGGAGATACTACT-GGACTCCTATTACTAAAATATG-AAAAAACGGAGGCACGTAAATTACTCGTTTAAGCGTGTAACTGGCTGAATTAGAATTTTATCACACCAGAAGTGGGTTCCTAGGTCTCTGTTTCAGGATTCCTGAGTTACACAGG-GTAAACCTGCCATTTCAGGAGATACGCGGTTAAGAATCTGGTTGGGGAGCTGGGCTGGCCATTGTCATGGATCAGTCATAAATTAGTGGCTTGGGGCTGGCCCTTGACATGGATCAGTCATAAATTAGTGGCTTGATACT i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 11274161 506 + 72422247 caaatgattctcctgcctcagcctcccgagtagctgggattacaggtgcgtgccaccacgcctggctaaCAAAAACATTTTGAAAAGGGTTAAATAAATAATGCACAAACTAAGGAAAAATACTGTTTT-CAAAAATGATGGAGAGGATCACTATGATGATGAATGATTCCACTGGTCACATTATTGATAGAGCAATCAGTAAATCCAGGCACATCCTGGAGATACTACT-GGACTCCTATTACTAAAATATG-AAAAAACAGAGGCATGTAAATTACTCGTTTAATCGTATAACCGACTGAATTAGAATTTTATCACACCAGAAGTGGGTTCCTAGGTCTCTGTTTCAGGATTCTTCAGTTACACAGG-GTAAACCCGCCATTTCAGGAGATATCCGGTTAAGAATCTGGTTGGGGAGCTGTGCTGGCCCTTGTCATGGATCAGTCACAAATTACTGGCTTGGGGCTGGCCCTTGACATGGATCAGTCATAAATTAGTGGCTTGATACT i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56846141 506 - 109391073 caaacgattctcctgcctcagcctcctgagtagctgggaatacaggtgcatgccaccacgcctggctaaCAAAAACATTTTGAAAAGGGTTAAATAAATAATGCACAAACTGAGGAAAAATACTGTTTT-CAAAAATGATGGAGAGGATCACTATGATGATGAATGATTCCACTGGTCACATTATTAATAGACCAATCAGTAAATCCAGGCACAACCTGGAGATACTACT-GGACTCCTATTACTAAAACATG-AAAAAATGGAGGCACATAAATTACTCGTTTAAGCGTATAACGGATTGAATTAGAATTTTATCACACCAAAAGTGGGTTCCTAGGTCTCTGTTTCAGGA-TCCTGAGTTACACAGGTGTAAACCCGCCATTTCAGGAGATACCCGGTTAAGAATCGGATCTGGGAGGTGGGCTGGCCCTTGACATGGATCAGTCATAAATTAGGGGCTTGGGGCTGGCCCTTGACATGGATCAGTCATAAATTAGTGGCTTGGTACT i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128514039 466 + 229590362 caaacgattctcctgcctcaacctcccgagtagctgggattacaggcacatgccaccacacctggctaaCAAAAACATTTTGAAAAGGGTTAAATAAATCATGCACAAACTGAGGAAAAATACTGTTTT-CAAAAATGATGGAGAGGATCACTATGATGATGACTGATTCCACTGGTCACATTATTGATAGAACAATCAGTAAATCCAGTAACATTCTGGAGATACTACT-GGACTCCTATTACTAAAATATGAAAAAAATGGAGGCACATAAATTACTCGTTTAAGTGTAGAACGGACTGAATTAGAATTTTATCACACCAGAAGTGGGTTCCTAGGTCTCTGTTTCAGCTTTCCTGTGTTACACAGGTGTAACCCCGCCATTTCAGGAGATACCCGGTTTAGAATCTGGTCGGGAATGT------------------------------------------GGGCTGGCCCTTGACATGGAACAGTCATAAATTAGTGGCTTGGGACT i rheMac3.chr1 N 0 I 45 s macFas5.chr1 125116361 465 - 227556264 caaacgattctcctgcctcaacctcccgagtagctgggattacaggcacatgccaccacacctggctaaCAAAAACATTTTGAAAAGGGTTAAATAAATCATGCACAAACTGGGGAAAAATACTGTTTT-CAAAAATGATGGAGAGGATCACTATGATGATGACTGATTCCACTGGTCACATTATTGATAGAACAATCAGTAAATCCAGTAACATTCTGGAGATACTACT-GGACTCCTATTACTAAAATACG-AAAAAATGGAGGCATGTAAATTACTCATCTAAGCGTATAACGGACTGAATTAGAATTTTATCACACCAGAAGTGGGTTCCTAGGTCTCTGTTTCAGCTTTCCTGTGTTACACAGGTGTAACCCCGCCATTTCAGGAGATACCCGGTTTAGAATCTGGTTGGGAAGGT------------------------------------------GGGCTGGCCCTTGACATGGAACAGTCATAAATTAGTGGCTTGGGACT i macFas5.chr1 C 0 I 15 s papAnu2.chr1 98633453 465 - 220367699 caaaagattctcctgcctcagcatcccaagtagctgggattacaggcacatgccaccacgcctggctaacaaaaacattttgaaaagtgtTAAATAAATCATGCACAAACTGGggaaaaatactgtttt-caaaaataatacagaggATCACTATGATGATGAGTGATTCCACTGGTCACATTATTGATAGAACAATCAGTAAGTCCAGGCACATCCTGGGGATACTACT-GGACTCCTATtactgaaatatg-aaaaaatggagGCATGTAAATTACTTGTTTAAGCGTATGATGGACTGCATTAGAATTTTATCACACCACAAGTGGGTTCCTAGGTCTCTGTTTCAGGATTCCTGAGTTACACAGGTGTAAACCCAGGATTTCAGGAGATACCCAGTTTAGAATCCGGTCAGGGAGGT------------------------------------------GCCCTGGCCCTTGACATGAATAAGTCACAAATTAGTGGCCTAGGACT i papAnu2.chr1 C 0 C 0 s chlSab2.chr20_KE148049v1_random 209469 466 + 1557941 caaacgattctcctgcctcaacctcccgagtagctgggattacaggcacatgccaccacacctggctaaCAAAAACATTTTGAAAAGGGTTAAATAAACCATGCACAAACTGAGGAAAAATACTGTTTT-CAAAAATGATGGAGAGGATCACTGTGATGATGACTGATTCCACTGGTCACATTATTGATAGAACAATCAGTAAGTCCAGGCACATCCTGGAGATACTACTGGGACTCCTATTACTAAAATATG-AAAAACTGGAGGCATGTAAATTAATCGTTTAAGCGTATAACGGACTGAATTAGAATTTTATCACACCAGAAGTGGGTTCCTAGGTCTCTGTTTCAGTTTTCCTGTGTTACACAGGTGTAAACCCGCCATTTCAGGAGATACCCTGTTAAGAATCTGGTCGGGAAGGT------------------------------------------GGGCTGGCCCTTGACATGGATCAGTCATAAATTAGTGGCTTGGTACT i chlSab2.chr20_KE148049v1_random C 0 C 0 a score=1429.000000 s hg38.chr1_KI270765v1_alt 78740 3 + 185285 CCA s panTro4.chr1_GL389091_random 113075 3 + 179278 CTG i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 11274667 3 + 72422247 CTG i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56846647 3 - 109391073 CCG i nomLeu3.chr12 C 0 C 0 s macFas5.chr1 125116841 3 - 227556264 TCA i macFas5.chr1 I 15 I 27 s papAnu2.chr1 98633918 3 - 220367699 CCG i papAnu2.chr1 C 0 C 0 s chlSab2.chr20_KE148049v1_random 209935 1 + 1557941 --A i chlSab2.chr20_KE148049v1_random C 0 I 2 e rheMac3.chr1 128514505 45 + 229590362 I a score=505710.000000 s hg38.chr1_KI270765v1_alt 78743 246 + 185285 GGAAGAT-AAAATCTTCCCCATTTATCTAGTGATTGACAATGCATGAATACTTTAAAAGC-TCAAACAAgcgtccctgggtgggctcgaaccaccaacctttcggttaacagccgaacgcgctaaccgattgcgccacagagacAGGTACTGTCAGTTCTACTGGGCGCTATAGGAAGGGCGCACGCACGAAACTTCCTCCGTCCCTTGCATCCTCAGGGCCCGCCCGGCAGGACGACTGAGCAGG-CC s panTro4.chr1_GL389091_random 113078 246 + 179278 GGAAGAT-AAAATC-TCCCCATTCATGTAGTGATTGACAATGCGTGCATGCTTTAAATGT-TCCAATAAgcgtccctgggtgggctcgaaccaccaacctttcagttaacagccaaacgcgctaaccaattgcgccacagagacAAGCACTGCTGACTCCACTGGGCGATATAGGAAGGGCGCACTCACTAAACTTCCTCCGTCCCTTCTATTCTCAGGGCCCGCCTGGCAGGACGACTGAGCAAGTCC i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 11274670 246 + 72422247 GGAAGAT-AAAATC-TCCCCATTTATGTAGCGGTTGACAACACATACATGCTTTACATGT-TCCAGTAAgcgtccctggatgggctcaaaccaccaacctttctgttaacagccgaacaagctaaccgattgcgccacagaaacAAGCACTGTTGACTCCACTGGGCGATATAGGAAGGGCGCACTCACTAAATTTCCTCCGTCCCTTCTATTCTCAGGGCCTGCCTGGCAGGACGACTGAGCAAGTCC i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56846650 247 - 109391073 GGAAGAT-AAAATCTTCCCCATTTGTCTAGTGATTGACAATGCGTGAATGCTTTAAAAGT-TGCAATAAgcgtccctgggtgggctcgaaccaccaacctttcagttaacagccgaacgcgctaacccattgcgccacagagacAAGCAGTACCGGCTCTAATAGGCAATATAGGATGGGCACACTCACTAAACTTCCTCCATCCTTTCTATTCTCAGCGCCCGCCTGGCAGGACGACTGAGCAAGGCT i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128514550 245 + 229590362 GGAAGAT-AACATTTCCCCCATTTGTCTAGTGATTGTCAATGCGTGAATGCTTTAAAAGT-TGCAATAAgcgtccctgggtgggctcgaaccaccaacctttcggttaacagccgaacgcgctaaccgattgcgccacagagacAGGAACTGCTAGTTCTACTACGCGATATAT-AAGGGCGCACTCACTAAACTTCCTCTGTCCCGTTTATTCTCAGGGCCCGCCCGGCAGGACGACTGAGCAAGGC- i rheMac3.chr1 I 45 N 0 s macFas5.chr1 125116871 246 - 227556264 GGAAGAT-AACATTTCCCCCATTTGTCTAGTGATTGTCAATGCGTGAATGCTTTAAAAGT-TGCAATAAgcgtccctgggtgggctcgaaccaccaacctttcggttaacagccgaacgcgctaaccgattgcgccacagagacAAGGACTGCTAGTTCTACTACGCGATATATGAAGGGCGCACTCACTAAACTTCCTCTGTCCCGTTTATTCTCAGGGCCCGCCCGGCAGGACGACTGAGCAAGGC- i macFas5.chr1 I 27 I 1 s papAnu2.chr1 98633921 248 - 220367699 GGAAGATAAAAATCTTGCCCATTCATGTAGTGATTGACAAAGCATGAATGCTTTAAAAGCATTCCAGAAGCGTCCCTGGGTGGGCTCGATCCACCAACCTTTCAGTTAACAGCCGAACGCGCTAACCGATTGCGCCACAGAAACAGGTACTGTGAGCTCTACTGGGCGCTACAGGAAGGGCGCACTCACTAaactttctccctcccttccatcctcAGGGCCCGCCAGGCAGGACCACCGAGCAAGGC- i papAnu2.chr1 C 0 I 2 s chlSab2.chr20_KE148049v1_random 209938 246 + 1557941 GGAAGAT-AAAATTTCCCCCATTTATCTAGTGATTGTCAATGCGTGAATGCTTTAAAAGT-TGCAATAAgcgtccctgggtgggctcgaaccaccaacctttcggttaacagccgaacgcgctaaccgattgcgccacagagacAAGGACTGCTAGTTCCAATACGCGATATACGAAGGGCGCACTCACTAAACTTCCTCTGTCCCTTTTATTCTCAGGGCCCGCCGGGCAGGACGACTGAGCAAGGC- i chlSab2.chr20_KE148049v1_random I 2 I 1 a score=1515186.000000 s hg38.chr1_KI270765v1_alt 78989 702 + 185285 TTGGAAGACCGGAGAGATTGGAGCGGTAAGTCGCGCTGGTCACGTTGGACACCTGCGCGTTGGGAGATTCTGGAGCCAGAAGGATAGCCGAATGGCCTTCGCCCGCCCTGCCCCTCACCTGCTTCAGAAACCCCCGGAAACGCCCCGGTTGAGACCCCGGCCCGAACCGCCTGGGGGCCCTAGGGAGGCTGAACGCCCGGT-GGCTCCCGGGATGGCTCTTCCCGTTCTTTGCGCCGCCTTCACCCAGTGAGGGAGCCTGTGCCCTCCCTGCCCAGTCGCTTTTGGGGCCGCTGCGGAGCTTCCGCTGCCATCTTCGGATCCTGTGTTCCGCACGGGGGCTCCACCAGGGCAGGGATCGTGGTGAGGGTGGCTCGTGGGTCCCCCTCGCGGGGAGCAGGGTCTGGCACTCACCAGGGCGCAGGACTAGGACTTGTCGAATGAATCCATC----CTTTTAGCTTTTAGTCCTTTGAAGAGCCTTGAGA--AGAAATCATGAGAGATTTTTCCATGGGGAAGTTCCTTTTACAAAGC---------ATTTATTTACGTGGACTTCTTGGCA-CCCCGCGGGGC-GGCAACGGGCAGGGCCTCCAGTGCCCCTTCTGCGCCGTGGAGCCGCGGGGGCTCAGCTGGGCGGTGGTC--GGGTCCTGAGGCCGGAGGGCGGGAGCAGGGGAGGGGAAAAGCAAAAGCGGGGAAAGAAGCCGGGGAGCG s panTro4.chr1_GL389091_random 113324 696 + 179278 TTGGAAAACCAGAGAGATTAGAGCGGTGAATCGCGCTGGTCACGTTGGACACCTGCGCATTAGGAGATTCTGGAGCC---AGGACAGCTGACTGGCCTTCGCCCGCCCTGCCCCTCTCCTGCTTCAGAAGCCCCCAGAAACTCCACGGTTGGCCACCCAGCCCGAGCCGCCTGGGGTCCCAAGGGAAGCTGAACACCCGGTGGGCTCCTGGGATGGTTCTTCCCGTTCTTTGCACTGCCTTCGCCCAGTGAGGGAGCCTGTGCCCATCCTGCCCAGTCGCTTTCGGGGCCGCTGCGGAGCTTCCGCTGCCATCTTCGGGTCCTGTGTTCCCCACGGGGGCTCCACCAGGGCAGGAATTGTGGCGAGGGTCGCTCCTGGGT-CCCCTCGCAGGGAGCAGGGTCTGGCACTTACCAGGGCGCACGACTAGGACTTGTCGAATGAATCCATCATCGCCTTTAGCTTTTTGTCCTTGGAAGAACCCTGAGAGTGGAAATCAAGAGATTTTTTTCCATGGGGAAGTTCTTCTTACAAAGC---------GTT----------GATTTCTCGGCA-CCCCGCGGGGCGGGCAACTGGCAGGGCCTCCTGTGCACCTTCTGCGCTGTGGAGCCGCTGGGGCTCAGCTGGGCGGTGGTC--GGGTCGTGGGGCGGTAGGGCGGGAGCGGGGGAAGGGAAAAGCAAAAGCTGGAAAAGAAGCCGGGGAGTC i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 11274916 696 + 72422247 TTGGAAAACCAGAGAGATAAGAGCGGTGAATCGTGCTGGTCACCTTGGACACCTGCGCGTTAGGAGATTCTGGAGCC---AGGACAGCTGACTGGCCTTCGCCCGCCCTTCCCCTATCCTGCTTCAGAAGCCCCCAGAAATTACACCGTTGGCCACCCAGCCCGAGCCGCCTGGGGTCCCAAGGGAAGCTGAACACCCGGTGGGCTCCCGGGATGGTTCTTCCCGTTCTTTGCGCTGCCTTCACCTAGTGAGAGAGCCTATGCCCATCCTGCCCAGTCGCTTTCGGGGCCGCTGCGGAGCTTCCGCTGCCATCTTCGGATCCTGTGTTCCCCACGGGGGCTCCACCAGAGCAGGGATGGTGGTGAGGGTCGCTCGTGGGT-CCCCTCGCAGGGAGCAGGGTCTGGCACTCAGCAGGGCACACGACTAGGACTTGTCGAATGAATCCATCGTCGCCTTTAGCTTTTAGTTCTTTGAAGAGCCCTGACAGTGGAAATCAAGAGATTTTTTTCCATGGGGAAGTTCTTTTTACAAAGC---------GTT----------GATTTCTCGGCG-CCCCGCGGGGCGGGCAACTGGCAGGGCCTCCTGTGCACCTTCTGCGCTGTGGAGCCGCTGGGGCTCAGCTGGGCGGTGGTC--AGGTCGTGGGGCAGTAGGGCGGGAGTGGGGGAAGGGAAAAGCGAAAGCTAGAAAAGAATCCGGGGAGTC i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56846897 698 - 109391073 TTGGAAAACCAGAGAGATTAGAGCGGTGAGTTGCACTGGTCACGTTGGACACCTGCGCGTTAGGAGATTCTGGAGCCAGACGGAGAGCCGAATGGCCTTCGCCCGCCCTGCCCCTCTCTTGCTTCAGAAGCCCCCAGAAACTCCCCGGTCGGCGACCCAGCCCGAGCCGCCTGGGGTCCCAAGGGAAGCTGAACGCCTGGTGGGCTCCCGGGATGGTTCTTCCCCGTCTTTGTGCAGCCTTCACCCAGTGAAGGAGCCTGTATCCACCCTGCCCAGTCGCTTTC-GGGCTGCTGCGGAGCTTCCGCTGCCATCTTCGGATCCTGTGTTCCCCACGGGGGCTCCACCAGGGCAGGGATGGTGGTGAGGGTCGCTCGTGGGT-CCCCTCGCTCGGAGCAGGGTCTGGCACTCACTAGAGCGCACGACTAGGACTTGTCGAATGAATCCATCGTCGCCTTGAGCTTTTGGTCCTTTAAAGAGCCCTGAGAGTGGAAATCAAGAGATTTTTTTCCATGGGGAAGTTCTTCTCACAAAGC---------GTT----------GATTTCTCGGCA-CCCCGCGGGGCGGGCAACTGGCAGGGCCTCCTGTGCGCCTTCTGCGCGGTGGAGCTGCGGGGGCTCAGCTGGGCGGGGGTC--TGTTCGTGGGGCCGTAGGGTGGGAGCGGGGGAAGGGAAAAGCAAAAGCTGGGAAAGAAGCCAGGGAGTC i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128380151 700 + 229590362 TTGGAAAACCAGAAAGATTAGAGCGGTGAGTCGCGCTGGTCACGTTGGACACCTGCGCGTTAGGAGATTTTGGAGCCAGAGGGAGAGCCGAATGGCCTTCGCCCGCCTTGCCCCTCTCCTTCTTCAGAAGCCCCCAGAAACTCCCCGGTCGGCGACCCAGCCCGAGCCGCCTGGGGTCCCAAGGGAAGCTGAACGCACGGTGGGCTCCCAGGATGGCTCTTCCCGTTCTCTGCGCCGCCTTCAGCCAGTGAGGGAGCCTGTGCCCACCCTGCCCAGTTGCTTTCGGGGCCGCTGCGGAGCTGCCGCTGCCATCTTCGGATCCTGTGTCCCGCACGGGGGCTCCACCAGGGAAGGGATGGTGGCGAGGGTCGCTCCTGGGT-CCCCTTGCGGGGAGCAGGGTCTGGCACTCACCAGGGCGCCGGACTAGGACTTGCCGAATGAATCCATCGTCGCCTTTAGCTTTTAGTCCTTTGAAGAACCCTGAGAGTGGAAATCAAGAGAT-ATTTTCCATGGGGAACTTCTTTTTACAAAGC---------GTT----------GATTTCTCGGCA-CCCCGCGGGGCGGCCAACTGGCAGGGCCTCCGGTGCATCTTCTGCGCGGTGGAGCCGCAGGGGCTCAGCTGGGCGGTGGTCCGGTGTCCTGGGGCCTTAGGGCAGGAGCAGGGGAAGGGAAAAGCAAAAGCCTGGAAAGAAGCCGGGGAGCG i rheMac3.chr1 N 0 C 0 s macFas5.chr1 125117118 699 - 227556264 TTGGAAAACCAGAGAGATTAGAGCGGTGAGTTGCGCTGGTCACGTTGGACACCTGCGCGTTAGGAGATTTTGGAGCCAGACGGAGAGCCGAATGGCCTTCGCCTGCCCTGCCCCTCTCCTGCTTCAGAAGCCCCCAGAAACTCCCCGGTCGGCGACCCAGCCCGAGCAGCCTGGGGTCCCAAGGGAAGCTGAACACCCGGCGGGCTCCCGGGATGGTTCTTCCCGTTCTTTGTGCCGCCTTCACCAAGTGAGGGAGCCTGTGCCCACCCTGCCCAGTTGCTTTCGGGGCCGCTGCGGAGCTTTCGCTGCAGTCTTCGGATCCTGTGTTCCGCACGGGGGCTCCACCAGGGCAGGGATGGTGGCGAGGGTCGTTCCTGGGT-CCCCTTGCGGGGAGCAGGGTCTGGCACTCACCAGGGCGGACGACTAGGACTTGCCGAATGAATCCATCGTCGCCTTTAGCTTTCAGTCCTTTGAAGAGCCCTAAGAGTGGAAATCAAGAGGT-TTTTTCAATGGGGAAGTTCTGTTTACAAAGC---------GTT----------GATTTCTCGACACCCCCGCGGGGCGGGCAACTGGCAGGGCCTCCGGTGCACCTTCTGCGCGGTGGAGCCGCGGGGGCTCAGCTGGGCGGTGGTC--GGGTCGTGGGACCGTAGGGCGGGAGCAGCGGAAGGGAAAAGCAAAAGCTGGGAAAGAAGCCGGGGAGCG i macFas5.chr1 I 1 C 0 s papAnu2.chr1 98634171 704 - 220367699 TTGGAAAATCCGAAAGATTGGAGCGGTGACTCGCGCTGGTCACGTTGGACACCTTCGCGTTTGGAGATTCTGGAGCCAGAAGGACAGCCGAATGGCCTTCGCCCGCCCTGCCCCTCGCCTGCTTCAGAAGCCCCCGGAAACGCCCCTGTT-GCGACCCCGGCCGAGCCGCCTGGGGGCCCAAGGGAAGCTGAACGCCCAGT-GGCTCCCGGGATGGCTCTTCCCGTTCTTTGTGTCACCTTCACCCAGTGAGGGAGCCTGTGCCCACCCTGCCCAGTCGCTTTC-GGGCCCCTGTGGAGGTGCCGCTGCCATCTTCGGATCCTGTGTCCCGCATGGGGGCTCCACCAGGGCAGGGATGGTGGCGAGGGTCGCTCGTGGGT-CCCCTCCCGGGGAGTAGGGTCTGCCACTCACCAGGCCGCCCGACTAGGACTTGTCGAATGAATCCATCGTGGCCTTTAGTTTTTAGTCCTTTGAAGAGCCTTCAGAATGGAAATCATGAGAGATTTTTCCATGGAAAAGTTCTTTTTACAAAGCATTTATTTAGTT----------GACTTCTCGGCA-CCCCGCGGGGCTG-CAACGGGCAGGGCCTCCAGTGCACTTTCTGCGCAGTGGAGCCGCGGGTACTCAGCTGGGCGGTGGTC--GGGTCTTGAGGCCTGAGGGCGGCAGCGGGGGaagggaaaagcaaaagcaaaaaaagaagcCGAGGAGCG i papAnu2.chr1 I 2 I 958 s chlSab2.chr20_KE148049v1_random 210185 699 + 1557941 TTGGAAAACCAGAGAGATTAGAGCGGTGAGTCGCGCTGGTCACGTTGGACACCTGCGCGTTAGGAGATTTTGGAGCCAGACGGAGAGCCGAATGGCCTTCGCCTGCCCTGCCCCTCTCCTACTTCAGAAGCCCCCAGAAACTCCCCGGTCGGCGACCCAGCCCGAGCCGCCTGAGGTCCCAAGGGAAGCTGAACACCCGGTGGGCTCCCGGGATGGTTCTTCCCGTTCTTTGTGCCGCCTTCACCCAGTGAGGGAGCCTGTGCCCACCCTGCCCAGTCGCTTTCGAGGCCGCTGTGGCGCTTCCGCTGCCATCTTCGGATCCTGTGTTCCGCACGGGGGCTCCACCAGGGCAGTGATGGTGGCGAGGGTCGCTCGTGGGT-CCCCTTGCGGGGAGCAGGGTCTGGCACTCACCAGACCGCCCGACTAGGACTTGCCGAATGAATCCATCGTCGCCTTTAGCTTTTAGTCCTTTGAAGAGCCCTAAGAGTGGAAATCAAGAGGT-TTTTTCAATGGGGAAGTTCTGTTTACAAAGC---------GTT----------GATTTCTCGGCACCCCCACGGGGCGGGCAACTGGCAAGGCCTCCGGTGCACCTTCTGCGCGGTGGAGCCGCGGGTACTCAGCTGGGCGGTGGTC--GGGTCGTGGGACCGTAGGGCGGGAGCAGGGGAAGGGAAAAGCAAAAGCTGGGAAAGAAGCCGGGAAGTG i chlSab2.chr20_KE148049v1_random I 1 C 0 a score=931598.000000 s hg38.chr1_KI270765v1_alt 79691 468 + 185285 GTGGACCAGACGTCCAGACCTCCTGAAAGGCTGGCGGGGAGGCACAGGCGGGATCTTCCGGAGGTGAGAATT-----------TTTTTTTATTATAGCAGAAT-------------GGGGAGGAATTGAGGGGAAAATGG----AGATAGAACCTGAAAGAG-CCCCAAACGCCAGAACCTGTAGCTCCCCAAGAATAAGATCTTCCAGAAGAACTAGACCCAAAACTAGCCGTTGGGGAACACCGAAATCCTTGGAGGAGCAACATCCGCATGACCCTCTGTGTTCCTTTAGGCAAAAGGACTTGCTTCCA----TTGTTTGTTCAATTGTTTGTGTTTGTTAAATAAATAAAACGATTTTCATGTATCTTTGAAATTACTTTGGCGCTACTATTTTATGattgcaaataattcggcagtgatcattcttgtacacttctcattggccatttgtgtatttctatagggtagaggcctggagagcagttgctccagcatag s panTro4.chr1_GL389091_random 114020 463 + 179278 GTGAACCAGACATCCAGACCTCCTGAAAGGCTAGTGCAGAAGCACAGGCGGGATCTTCTGGAAGTGAGAATTGTTTTTGTTTGTTTTTCTATTGTAGCAGAAT-------------GGGG--------------AAATGG----AGAGAGAACCTAAAAGAG-CCCCAAACGCGAGGACCTATTGCTCCCCAAGAATAACATCTTCC---AGAACTAGACAGAAAACTAGGCGTCTGGGTACCCTGAAATCCTTGGAGGAGTAGCATCATCCTGACCCTCTGTGTTGCTTTTGGC-AAACGACTTGCTTCCATTGTTTGTTTGTTCAATTGTC--TGTTTGTTAAATAAATAAAACCCTTTTCATATATCTTTAAAAttacattggttctattattttatgattagagacaatactgcagtcatcattcttgtacacttctcattggccactggtgtatttctatagggtggaggcctggagagcagttgttccagcatag i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 11275612 462 + 72422247 GTGAACCAGACATCCAGACCTCCTGAAAGGCTAGTGCAGACGTACAGTCGGGATCTTCTCGAAGTGAGAATTGTTTTTGTTTGTTTTTCTATTGCAGCAGCAT-------------GGGG--------------AAATAG----AGAGAGAACCTAAAAGAG-CCCCAAACTCGAGGATCTATTGCTCCCCAAGAATAACATCTTCC---AGAACTAGACAG-AAACTAGGCGTCTAGGAACCCTGAAATCCTTGGAGGAGTAGCATCATCCTGACCCTCTGTGTTCCCTTTGGC-AAAGGACTTGCTTCCATTGTTTTTTTGTTCAATTGTC--TGTTTGTTAAATAAATAAAACCCTTTTCATATATCTTTAAAAttacattgattctattgttttatgattacaaacaatgctgtagtcatcattcttgtacacttctcattggccactggtgtatttctatagggtggaggcctggagagcagttgttccagcatag i ponAbe2.chrUn C 0 I 656 s nomLeu3.chr12 56847595 454 - 109391073 GTGAACCAGACATCCAGACCTCCTGAAAGGCTCGTGCAGACGCATAGGCGGGATCTTCTGCAAGTGAGAATTGCTTTTG----TTTATCTATTGTAGCAGAAT-------------GGGG--------------AAATGG----AGAGAGAACCTGAAAGAG-CCCCAAACTCGAGGACCTATTGCTCCCCAAGAATAACATCTTCC---AGAACTAGACAG-AAACTAGGCGTCTGAGAACCCTGAAATCCTTGGAGGAGTAGCATCATCATGACCCTCTGTGTTCCTTTTGGC-AAAGGACTTGCTTCCATTGTTTGTTTGTTCAATTGTC------TGTTAAATAAATAAAACTCTTTTCATATATCTTTAAAAGtaggttggttctattattttgtgattacaagcaatgctgcagtcatcattcttgtacacttctcattggccactggtatatttccatagggtggatgcctggagattagttgttccagcatag i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128380851 454 + 229590362 GCGGACCAGACCTCCAGACCTCCTGAAAGGCTCGTGCAGAGGCACAGGCGGGATCTTCTGGAAGTGAGAATTGTTTTTATTTGTTTATTTATTGTAGCAGAAT-------------GGGG--------------AAATGG----AGAGAGAATCCGAAAGAG-TCCCAAACTCGAGGACCTATTGCTCCCCAAGAATAACATCATCC---AGAACTAGACAGAAAACTAGGAGTCTGGGAACCCTGAAATCCTTGGAGGAGTAGCATCATCATGACCCTCTGTGTTCCTTTTGGC-AAAGGACTTGCTTCCA----TCGTTTGTTCAATTGTC--TGTTAAATAAATAAATAAAACCTTTTTCATATATCTTTAAAATTACATTGGTTCTA-----TTATGattacaaataatgctacagtcatcattcttgtacacttctcattgcccactggtatatttctatagggtggaggcctggagagcagttgttccaggatag i rheMac3.chr1 C 0 C 0 s macFas5.chr1 125117817 463 - 227556264 GCGGACCAGACCTCCAGACCTCCTGAAAGGCTCGTGCAGAGGCACAGGTGGGATCTTCTGGAAGTGAGAATTGTTTTTGTTTGTTTATTTATTGTAGCAGAAT-------------GGGG--------------AAATGG----AGAGAGAACCTGAAAGAG-CCCCAAACTCGAGGACCTGTTGCTCCCATAGAATAACATCTTCC---AGAACTAGACAGAAACCTAGGCGTCTGGGAACCCTGAAATCCATGGAGGAGTAGCATCATCATGACCCTCTGTGTTCCTTTTTGC-AAAGGACTTGCTTCCATTGTTTGTTTGTTCAATTGTC--TGTTAAATAAATAAATAAAACCCTTTTCATATCTCTTTAAAATTACTttggttctattattttatgattacaaataatgctgcagtcatcattcttgtacacttctcattgcccactggtatatttctatagggtagaggcctggagagcagttgttCCAGCATAG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98635833 460 - 220367699 GTGGACCAGACATCCAGACCCCCTGAAAGGCTCGTGGGGAGGCACAGGCGGGATCTTCCGGAGGTGAGaattgtttt----------tttattgtaaCAGAATGGGGAGGAATTGAGGGG--------------AAATGGAGATAGATAGAACCTGAAAGATCCCCCAAACACGAGAACCTGTAGCTCCCCAAGCATAAGATGTCGC---AGAAGTAGACCAAAACCTAGGTTCCTGGGAACCCTAAAATCCTTGGAGG---------ATCATGACCCTCTGTGTTCCTTTTGGC-AAAGGACTTGCTTCCA----TTGTTTGCTCAATTGTtggtgtttgttgaataaataagacTATTTTCATGTGTCTTTGAAATTACTTTGGctctattattttatggttacaaataatgctgcagtgatcATTCTTGTACACTTctcattggccatttgtgtatttcCATAGGATAGAGGCATGGAGAGCAGTTGTTCCAGCATAG i papAnu2.chr1 I 958 C 0 s chlSab2.chr20_KE148049v1_random 210884 463 + 1557941 GCGGACCAGACATCCAGACCTCCTGAAAGGCTCATGCAGAGGCACAGGTGGGATCTTCTGGAAGTGAGAATTGTTTTTGTTTGTTTATTTATTGTAGCAGAAT-------------GGGG--------------AAATGG----AGAGAGAACCTGAAAGAG-CCCCAAACTCGAGGACCTGTTGTTCCCAAAGAATAACATCTTCC---AGAACTAGACAGAAAACTAGGCGTCTGGGAACCCTGAAATCCTTGGAGGAGTAGCATCATCATGACCCTCTGTGTTCCTTTTTGC-AAAGGACTTGCTTCCGTTGTTTGTTTGTTCAATTGTC--TGTTAAATAAATAAATAAAACCCTTTTCATATCTCTTTAAAATTACTttggttctattattttatgattacaaataatgctgcagtcatcattcttgtacacttctcattgcccactggtatatttctatagggtagaggcctggagagcagttgttccagcatag i chlSab2.chr20_KE148049v1_random C 0 I 696 a score=12730.000000 s hg38.chr1_KI270765v1_alt 80159 19 + 185285 ggA---TTACACAGtttttgtt s panTro4.chr1_GL389091_random 114483 19 + 179278 tgt---ttacacagcttttatt i panTro4.chr1_GL389091_random C 0 C 0 s nomLeu3.chr12 56848049 19 - 109391073 tgt---ttacatagcttttatt i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128381305 19 + 229590362 tgt---ttacacagcttttatt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 125118280 22 - 227556264 tggaaataaaatagcttttatt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98636293 17 - 220367699 TGa---tt--acagtttttgtt i papAnu2.chr1 C 0 C 0 e chlSab2.chr20_KE148049v1_random 211347 696 + 1557941 I e ponAbe2.chrUn 11276074 656 + 72422247 I a score=910.000000 s hg38.chr1_KI270765v1_alt 80178 1 + 185285 t s panTro4.chr1_GL389091_random 114502 1 + 179278 t i panTro4.chr1_GL389091_random C 0 I 647 s nomLeu3.chr12 56848068 1 - 109391073 t i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128381324 1 + 229590362 t i rheMac3.chr1 C 0 I 652 s papAnu2.chr1 98636310 1 - 220367699 t i papAnu2.chr1 C 0 C 0 e chlSab2.chr20_KE148049v1_random 211347 696 + 1557941 I e ponAbe2.chrUn 11276074 656 + 72422247 I e macFas5.chr1 125118302 0 - 227556264 C a score=-950.000000 s hg38.chr1_KI270765v1_alt 80179 30 + 185285 gtttgtttgtttgtttatttatttatttat s nomLeu3.chr12 56848069 30 - 109391073 cattccgttttctttcctttgttgctttat i nomLeu3.chr12 C 0 T 22738 s papAnu2.chr1 98636311 2 - 220367699 ----------------------------at i papAnu2.chr1 C 0 C 0 e chlSab2.chr20_KE148049v1_random 211347 696 + 1557941 I e rheMac3.chr1 128381325 652 + 229590362 I e ponAbe2.chrUn 11276074 656 + 72422247 I e macFas5.chr1 125118302 0 - 227556264 C e panTro4.chr1_GL389091_random 114503 647 + 179278 I a score=25136.000000 s hg38.chr1_KI270765v1_alt 80209 320 + 185285 ttatttatttttgagacagagtctcgctctgtcacccaggctggagtgcagtggcgccatctcagctctcactgcaacctccgcctcccgggttcaagcgaatctcctgcttcagcctcccaagtagctgagattacaggtccgcgcgagccaccacatcgggctaatttttgtatttttagtagagacgggg-tttcatcgttttggccaggccggtctcaaactcctgacctcaagtgatctgcctgccttggcctctcaaagtgctgggattacaggcatgagccaccgcacccagcGATTACATGTTTTttttttat s papAnu2.chr1 98636313 314 - 220367699 ttatttatttttgagacag--tctcgctctgtcacccaggctgtagtgctgtggcacgatctca--cctcactgcaacctccgcctcccaggttcaagcgaatctcctgcttcagcctcccaagtaactgggattacaggcccgtacGAGCCACCaaactgggctaatttttgtatttttagtagagacgggggtttcaccgttttggccaagctggtctcaaactcctgacctcaagtgatctgcctgccttggcctctcaaagtgctgggattacaggcgtgagccaccgcacccagcgatTGCATGGtttttttt--- i papAnu2.chr1 C 0 C 0 e chlSab2.chr20_KE148049v1_random 211347 696 + 1557941 I e rheMac3.chr1 128381325 652 + 229590362 I e ponAbe2.chrUn 11276074 656 + 72422247 I e macFas5.chr1 125118302 0 - 227556264 C e nomLeu3.chr12 56848099 22738 - 109391073 T e panTro4.chr1_GL389091_random 114503 647 + 179278 I a score=819.000000 s hg38.chr1_KI270765v1_alt 80529 3 + 185285 ata s nomLeu3.chr12 56825361 3 - 109391073 ata i nomLeu3.chr12 T 22738 C 0 s papAnu2.chr1 98636627 3 - 220367699 ata i papAnu2.chr1 C 0 C 0 e chlSab2.chr20_KE148049v1_random 211347 696 + 1557941 I e rheMac3.chr1 128381325 652 + 229590362 I e ponAbe2.chrUn 11276074 656 + 72422247 I e macFas5.chr1 125118302 0 - 227556264 C e panTro4.chr1_GL389091_random 114503 647 + 179278 I a score=13470.000000 s hg38.chr1_KI270765v1_alt 80532 31 + 185285 tcattctattttctttccttatttggcttat s nomLeu3.chr12 56825364 31 - 109391073 tcattccattttctttcctttcttggcttat i nomLeu3.chr12 C 0 I 22704 s macFas5.chr1 125118302 31 - 227556264 tcattccattttctttcctttgttgctttat i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98636630 31 - 220367699 tcattctattttctttccttatttggcTTCT i papAnu2.chr1 C 0 C 0 e chlSab2.chr20_KE148049v1_random 211347 696 + 1557941 I e rheMac3.chr1 128381325 652 + 229590362 I e ponAbe2.chrUn 11276074 656 + 72422247 I e panTro4.chr1_GL389091_random 114503 647 + 179278 I a score=45521.000000 s hg38.chr1_KI270765v1_alt 80563 152 + 185285 tagctgtaac----tctttcttttgttatgtcagtgatggctttagggtccctagaatacatctttat-------ccgtctgccatcaagtgacattatacctccccttctggcctttatgttagtgtt---gtcagggaatttgattttggacatgttataaacc s nomLeu3.chr12 56848099 150 - 109391073 tagctaaaac----ccttt----tcttatttcagtggctgctttagggtttctgggatacgtctttaatttatcacagtctgctttcaagtgtcattatatctccctttctggcctttatcctagtgtt---at---gtaattttactttatgcat--tataatct i nomLeu3.chr12 I 22704 I 74 s macFas5.chr1 125118333 150 - 227556264 tagctataac----ccttt----tcttatttcagtggctgcattagggtttctgggatacatctttaatttattacagtctgctttcaattgtcattatacctccctttctgacctttatcctagtgtt---at---gtaattttacttt--atttattataagct i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98636661 152 - 220367699 TAGGTGtaactctttcttt----tgttatgTCAGTGATGGGTTTAGGGTTTCTAGAATACATCTTCA-------TCCGTCTGCCATCAAGTGACATTATACCTCCCCTTCTGGCCTTCATGCTAGTGTTGTCAT---GTAATTTGGTTTTGGACATGTTATAAACC i papAnu2.chr1 C 0 C 0 e chlSab2.chr20_KE148049v1_random 211347 696 + 1557941 I e rheMac3.chr1 128381325 652 + 229590362 I e ponAbe2.chrUn 11276074 656 + 72422247 I e panTro4.chr1_GL389091_random 114503 647 + 179278 I a score=-2316.000000 s hg38.chr1_KI270765v1_alt 80715 15 + 185285 cc-------------------------------------------aACATCCAAGT-------AC s macFas5.chr1 125118483 65 - 227556264 ttgtgattattattacttttatttattatgtcaaatattttttaaaatatttaaattataagaaa i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98636813 15 - 220367699 CC-------------------------------------------AACATCCAAGT-------AC i papAnu2.chr1 C 0 C 0 e chlSab2.chr20_KE148049v1_random 211347 696 + 1557941 I e rheMac3.chr1 128381325 652 + 229590362 I e ponAbe2.chrUn 11276074 656 + 72422247 I e nomLeu3.chr12 56848249 74 - 109391073 I e panTro4.chr1_GL389091_random 114503 647 + 179278 I a score=114121.000000 s hg38.chr1_KI270765v1_alt 80730 367 + 185285 GTACATA----------GCG---attttc----agtcgtctcca-------tttctttgtgtaggttcagatttctgtttggtatccttatccttaggcctggagga-ctcctt-taatatttcttgtagtgtggttcggtgaattctgtcatttttttgtatgtctttaaatgtcctgatttcagtcacatttttgaaagatatttcaatttggcatagaattctagaataactttttttctctcagtactt-taggat-gttgccactT-TGACGCTTTGTCATTGACATATC-------TTTCCTGTTTTTGTAAACTTGGCATAAAGTGGGTTTCCTGTACTTGTTATATGATTTTTGGATTGTGTATTCAAATTAAAAGtattaaatt-------aaaattaaaa s nomLeu3.chr12 56848323 386 - 109391073 gtacatgctttctaaatgcc---atttcc----aata---ttca-------tttctttgtataggcccacatttttatctgggatccttttgcctctgcctggagga-ctcttaataagatttcttgtaacgtgggttggtgaattcttttagctttt-gtatgtttttcaatgtccttatttcactcacagttttgaaa----ttttatttttgcatagaactctaggttaacttttcttctctaggcactt-taaaattgttaccattTATGACGCATTGTCATTATAATATCATCTTTCTTTCCTGTATTTGTAAGAATGGCATAAAGCCGGTTTCTTATGGTCGTTATATAATTTTCAGAATGTGTATTTAAATTTAAAATGTTAAATTTTACTAAAAAACTAAAA i nomLeu3.chr12 I 74 T 22715 s macFas5.chr1 125118548 390 - 227556264 acatata----------gtacatgctttctaaatgccatttccaatattggtttctttgtatgggcccacatttttatctggtatccttttgcttctgcttggaaga---ctct-taagatttcttgtagcatgggttggtgaattcctttagctttt-gtatgtttttcagtatccttatttcactcacagttttgaa----attttatttttgcatagaattctaggttacctttttttctctaggtacttaaaaaat-gttgccattTATGAAGCATTGTCATTATAATATCATCTTTCTTTCCTGTGTTTGTAAAAATGGCATAAAGCCAGTTTCTCGTGCTGGTTATATAATTTTCGGATTGTGTATTTAAATTTAAAATATTAAATTTTACTAAAAAACTAAAA i macFas5.chr1 C 0 I 15 s papAnu2.chr1 98636828 361 - 220367699 GTACATA----------GCA---ATTTTC----AGTCGTCTCCA-------TTTCTTTGTGTAGGTTCAGATTTCTGTCTAATATCCTTATCCTTACGCCTGGAGGGactcctt-taacatttcttgtagtgtgGTTTGGTGAATGCTGTCATTTTTT-GTATGTCTTTAAATGTTCTGATTTCAGTCacaattttgaaagatatttcaaTTTGGCATAGAATTCtagaataactttttttctctcagtaCTT-TAGGAT-TTTGCCACTT-TGACGCTTTGTCATTG-------ATATATCTTTACTGCTTTTGTAAAACTGGCATAAAGTGGGCTTCCTGTACTTGTTATGTAACTTTTGGGTtgtgtatttaaattaaaaatatt-------------aaactaaaa i papAnu2.chr1 C 0 I 1 e chlSab2.chr20_KE148049v1_random 211347 696 + 1557941 I e rheMac3.chr1 128381325 652 + 229590362 I e ponAbe2.chrUn 11276074 656 + 72422247 I e panTro4.chr1_GL389091_random 114503 647 + 179278 I a score=23383.000000 s hg38.chr1_KI270765v1_alt 81097 189 + 185285 tggcctgggcgaggtggctcacacctgtaatcccagcactttgggaaggggaggcag-aggatcgcttgagacccagagttggagaccaccctgggcaagatagcaagaccctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatacacataaatatgtatatatattatatgt s nomLeu3.chr12 56825994 156 - 109391073 Tggc-tggacgaggtggttcatgcctgtagtcccagcactttgggaggtggacacaggaagatcacttgagtcccagagttggagaccagtgtgggcaagatagcaagaccctgtctcC---------------------------------CATacacacacacacacacacacacacacaTTGTGAAT i nomLeu3.chr12 T 22715 I 22577 s papAnu2.chr1 98637190 150 - 220367699 -gGCCTGGgcgaggtggttcacgcctgtaatcccagcactttgggaaggggAGGCAG-AGGATCGCTGGAGACccagagttggagaccaccctggacaagaTAGGaagaccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg--------------------------------------tattatatgt i papAnu2.chr1 I 1 C 0 e chlSab2.chr20_KE148049v1_random 211347 696 + 1557941 I e rheMac3.chr1 128381325 652 + 229590362 I e ponAbe2.chrUn 11276074 656 + 72422247 I e macFas5.chr1 125118938 15 - 227556264 I e panTro4.chr1_GL389091_random 114503 647 + 179278 I a score=1474.000000 s hg38.chr1_KI270765v1_alt 81286 16 + 185285 atgtatgtatatataA s papAnu2.chr1 98637340 16 - 220367699 atgtatgtatatataa i papAnu2.chr1 C 0 C 0 e chlSab2.chr20_KE148049v1_random 211347 696 + 1557941 I e rheMac3.chr1 128381325 652 + 229590362 I e ponAbe2.chrUn 11276074 656 + 72422247 I e macFas5.chr1 125118938 15 - 227556264 I e nomLeu3.chr12 56826150 22577 - 109391073 I e panTro4.chr1_GL389091_random 114503 647 + 179278 I a score=4365.000000 s hg38.chr1_KI270765v1_alt 81302 3 + 185285 GTC s panTro4.chr1_GL389091_random 115150 3 + 179278 GTC i panTro4.chr1_GL389091_random I 647 C 0 s ponAbe2.chrUn 11276730 3 + 72422247 GTC i ponAbe2.chrUn I 656 C 0 s rheMac3.chr1 128381977 3 + 229590362 GTC i rheMac3.chr1 I 652 C 0 s macFas5.chr1 125118953 3 - 227556264 GTC i macFas5.chr1 I 15 C 0 s papAnu2.chr1 98637356 3 - 220367699 gtc i papAnu2.chr1 C 0 C 0 e chlSab2.chr20_KE148049v1_random 211347 696 + 1557941 I e nomLeu3.chr12 56826150 22577 - 109391073 I a score=52903.000000 s hg38.chr1_KI270765v1_alt 81305 39 + 185285 CTACAGTCACCTTAAGTTCCACCAACAGTGCACTTAAAG- s panTro4.chr1_GL389091_random 115153 38 + 179278 CTAGATTCATCTTAAGTTCCACCAACAGTCCACTTAAA-- i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 11276733 38 + 72422247 CTAGATTCATCTTAAGTTCCACCAACAGTCCACTTAAA-- i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56848727 38 - 109391073 CTAGATTCATCTTAAATTCCACCAACAGTGCACTTAAA-- i nomLeu3.chr12 I 22577 C 0 s rheMac3.chr1 128381980 34 + 229590362 CTAGATTCATCTTAAATTCCACCAACAGTGCGCT------ i rheMac3.chr1 C 0 C 0 s macFas5.chr1 125118956 34 - 227556264 CTAGATTCATCTTAAGTTCCACCAACAGTGCGCT------ i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98637359 39 - 220367699 CTAGATTCACCTtaagttccaccaacagtgcgcTTAAA-G i papAnu2.chr1 C 0 C 0 e chlSab2.chr20_KE148049v1_random 211347 696 + 1557941 I a score=275148.000000 s hg38.chr1_KI270765v1_alt 81344 138 + 185285 TAAAATGTGCCCAACCTGAGGCTCAAACCTACCTGCTGGCACGCAATTTGTGTTTGTGAGACAATCTCAACAGCATTTGCtttttctagcgtagtg--------gttttcctgttttcctcacatgtgaatgtcttcagtgcaaaa s panTro4.chr1_GL389091_random 115191 126 + 179278 ----ATGTGCCCAACCTGAGGGTCAAACCTACCTGCTGACGTGTAATTTGTGTTTGTGAGACATTTTCAACAGCATTTGCTTTCCCCAGACTACTG--------ATTTTCCT--------CACATCTGAATGTCTTCAGTGCAAAA i panTro4.chr1_GL389091_random C 0 I 35 s ponAbe2.chrUn 11276771 126 + 72422247 ----ATGCGCCCAACCTGAGGGTCAAACCTACCTGCTGACGCGTAATTTGTGTTTGTGAGACATTTTCAACAGCATTTGCTTTCCCCAGACTAGTG--------ATTTTCCT--------CACATCTGAATGTCTTCAGTGCAAAA i ponAbe2.chrUn C 0 I 35 s nomLeu3.chr12 56848765 124 - 109391073 ----ATGTGCCCAACCTGAGGGTCAAACCTACCTGCTGACGTGGAATT--TGTTTGTGAGACATTCTCAACAGCATTTGCTTTCCCCAGCTGAGTG--------ATTTTCCT--------CACATCTGGATGTCTTCAGTGCAAAA i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128382014 130 + 229590362 TAAAATGTGCCCAACCTGAGAGTCAAACCTACCTGCTGACGTGTAATTTGTGTTTGTGAGACATTCTCAACAGCATTTGCTTTCCCCAGCCGAGTG--------ATTTTCCT--------CACATCTGAATGTCTTCAGTGCAAAA i rheMac3.chr1 C 0 I 34 s macFas5.chr1 125118990 130 - 227556264 TAAAATGTGCCCAACCTGAGAGTCAAACCTACCTGCTGACGTGTAATTTGTGTTTGTGAGACATTCTCAACAGCATTTGCTTTCCCCAGCCGAGTG--------ATTTTCCT--------CACATCTGAATGTCTTCAGTGCAAAA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98637398 138 - 220367699 TAAAATGTGCCCAACCTGAGGCCCAAACCTACATGCTGAAGCGCAGTTTGTGTTTGTGAGACAATCTCAACAGCATTTGCTTTTCACAGCATagtatttttcctgttttcct--------cacACGTGAATGTCTTCAGTGCAAAA i papAnu2.chr1 C 0 C 0 s chlSab2.chr20_KE148049v1_random 212043 130 + 1557941 TAAAATGTGCCCATCCTGAGGGTCAAACCTACCTGCAGACGTGTAATTTATGTTTGTGAGACATTCTCAACAGCATTTGTTTTCCCCAGCCGAGTG--------ATTTTCCT--------CATATCTGAATGTCTTCAGTGCAAAA i chlSab2.chr20_KE148049v1_random I 696 I 34 a score=7778.000000 s hg38.chr1_KI270765v1_alt 81482 42 + 185285 cctgtcagaaTTCATTTCCTTTGCTAAAATGTTTTAAAATAA s nomLeu3.chr12 56848889 35 - 109391073 ------GAAAACCTTTGTCTTTGCAAAAATACTTTCAAATA- i nomLeu3.chr12 C 0 C 0 s macFas5.chr1 125119120 30 - 227556264 ------GGAAACCTTTTTCTTTGCAAAAA-----TAAACTA- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98637536 41 - 220367699 CCtgtcagaattcatttcctttgctaaaaaattttaaaata- i papAnu2.chr1 C 0 C 0 e chlSab2.chr20_KE148049v1_random 212173 34 + 1557941 I e rheMac3.chr1 128382144 34 + 229590362 I e ponAbe2.chrUn 11276897 35 + 72422247 I e panTro4.chr1_GL389091_random 115317 35 + 179278 I a score=16031.000000 s hg38.chr1_KI270765v1_alt 81524 7 + 185285 CTCTTAC s panTro4.chr1_GL389091_random 115352 7 + 179278 TTCTTAC i panTro4.chr1_GL389091_random I 35 C 0 s ponAbe2.chrUn 11276932 7 + 72422247 TTCTTAC i ponAbe2.chrUn I 35 C 0 s nomLeu3.chr12 56848924 7 - 109391073 TTCTTAC i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128382178 7 + 229590362 TTCTTAC i rheMac3.chr1 I 34 C 0 s macFas5.chr1 125119150 7 - 227556264 TTCTTAC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98637577 7 - 220367699 ctcctAC i papAnu2.chr1 C 0 I 11555 s chlSab2.chr20_KE148049v1_random 212207 7 + 1557941 TTCTTAC i chlSab2.chr20_KE148049v1_random I 34 C 0 a score=596653.000000 s hg38.chr1_KI270765v1_alt 81531 290 + 185285 TTCAAGTAAGTGCATTAAAAACAAACTTCTCAGTTGCATCCCTGGAATCCATGGAAAGTCCAGGAGAGACAATCAAGTGCTACAGGATCAAG-CCCAAACAGAACAGGACTAGGCATGGCTTCCTCACTAGGAGTCAGGCCAAAGTCATCTCCTTTGGTCTCCAATGGAGGCCAGAACTCGGTTCACCTGCAACGGGAGGACCTGGCCCAGAAGAGGTGGCCTTCATCTTCATGGTGCCTTCAGATAGGAAAT---CTAGGATTTCTTTTCTTCTCTTTGATCTACTTCCAACT s panTro4.chr1_GL389091_random 115359 292 + 179278 TTCAAGTAAATGCATTAAAAACAAACTTCTCAGTTGCAACCCTGGAATCCATCGAAAGCCCGGGAGAGACAATCAAGTGCTTCAGGATCAAGAGCTAAACAGAGGAAGACAAAGCGTGGCTTATTCACTAGGAGTCAAGCCAAAGTCAACTGATTTGGTCTCCAGTGGAGATCAGAACTCGGTTCACCAGCGACCTGAGGACCCGTCCCAGAAGAG--GGACTATCTCTTCATGGTGCCTTAAGATAGAAAATCTCCTAGGATTTCTTTCTTTCCCTTTGATCTACTTCCAACT i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 11276939 292 + 72422247 TTCAAGTAAATTCATTAAAAACAAACTTCTCAGTTGCATCCCTAGAATCCATCGAAAGCCCGGGAGAGACAATCAAGTGCTTCAGGATCAAGAGCTAAACAGGGGAGGACAAAGCGTGGCTTCTTCACTAGGAGTCAAGCCAAAGTCAACTGATTTGGTCTCCAATGGAGATCGGAACTTGGTTCACCAGCGACCCGAGGACCCGGCCCAGAAGAG--GGACTATCTCTTCATGGTGCCTTCAGATAGAAAATCTCCTAGGATTTCTTTCTTTCCCTTTGATCTACTTCCAACT i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56848931 279 - 109391073 TTCAAGTAAGTACATTAAAAACAAACTTCTCAGCTGCATCCCTGGAATCCATGGAAAGCCCAGGAGAGACA---------------ATCAAGAGCTAAATAAGGGAGGACAAAGCGTGGCTTCTTCACTAGGAGTCCAGCCAAACTCAACTGATTTGGTCTCCAGTGGAGATCGGAACTCGGTTCACCAGCGACGTGAGGACCCGGCCCAGAGGAGGCGGACTTTCTCTTCATGGTGCCTTCAGAGAGGAAATCTCCTAGGATTTCTTTCTTTCCCTTTGATCTAGTTCCAACT i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128382185 294 + 229590362 TTCAAGTAAGTGCATTAAATACAAACTTCTCAGTTGCATCTCTGGGATCCATGGAAAGCCCGAGAGAGACAATCAAGTCCTTCAGGATCAAGAGCTAAACAAGGGAGGACAAAGAGTGGCTTCTTCACTAGGAGTCAAGCCAAAGTCAACTGATTTGGTCTCCAACGGAGACTGGAACTCGGTTCACCAGTGAAGTGAGGACCCGGCCCAGAGGAGGCGGACTTTTTCTTCGTGGTGCCTTCAGACAGGAAATCTCCTAGGATTTCCTTTTTTCCCTTTGATCTACTTCCAACT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 125119157 294 - 227556264 TTCAAGTAAGTGCATTAAAAACAACCTTCTCAGTTGCATCCCTGGAATCCATGGAAAGCCTGAGAGAGACAATCAAGTGCTTCAGGATCAAGAGCTAAACAGGGGAGGACAAAGCGTGGCTTCTTCACTAGGAGTCAAGCCAAAATCAACTGATTTGGTCACCAATGGAGACTGGAACTCGGTTCACCAGTGAGGTGAGGATCCGGCCCAGAGGAGGTGGACTTTCTCTTCGTGGTGCCTTCAGATGGGAAATCTCCTAGGATTTCTTTCTTTCCCTTTGATCTACTTCCAACT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98649139 289 - 220367699 ttcAAGTAAGTGCATTAACAATATACTTCTCAGTTGCATCCCTGGAATCCATGGGAAGCCCAGGAGAGCCCATCAAGTGCTACAGGATCAAGC-CCAAACAGAACAGGACCACGCATGGCTTCCTCACTAGGAGCCAGGCCAAAGTCACCTCCTTCAGTC-CCAATGGAGGCTGGAACTTGGTTCACCTGCAACGGGAGGACCCAGCCCAGAAGGCATCGACTTCATCTTCATGGTGCCTTCAGATACAAAATCATCTaggatttc---ttttctctttgatctACTTCCAACT i papAnu2.chr1 I 11555 C 0 s chlSab2.chr20_KE148049v1_random 212214 294 + 1557941 TTCAAGTAAGTGCATTAAAAACAAACTTCTCAGTTGCATCCCTGGAATCCATGGAAAGCCCGAGAGAGACAATCAAGTCCTTCAGGATCAAGAGCTAAACAGGGGAGGACAAAGCGTGGCTTCTTCACTAGGAGTCAAGCCAAAGTCAACTGATTTGGTCTCCAACGGAGACTGGAACTCGGTTCACCAGTGAGGTGAGGATCCGGCCCAGAGGAGGCGGCCTTTCTCTTCGTGGTGCCTTCAGATAGGAAATCTCCTAGGATTTCTTTCTTTCCCTTTGATCTACTTCCAACT i chlSab2.chr20_KE148049v1_random C 0 C 0 a score=21649.000000 s hg38.chr1_KI270765v1_alt 81821 327 + 185285 CTCCCTTtttatttatttatttatttatttatttatttatttatttatttgagacagagtcttgctgtgttgcccaggctagagtgcagcggggcagtctcagctcactgcaacctccgcctcctgggttctagagattctcctgcctcagcctcctgagtagctgggattacaggcgccc-----gtcaccgcgcccagctacttgtatttttagtagagacagggtttcaccatcttggccaggctggtctcgaactcgtgacctcgtgatccacccacctcggcctcccaaagtgctgggattacaggcgtgagccaccgcatctggcc s papAnu2.chr1 98649428 302 - 220367699 Ctccctt----------------------------tgtatttatttatttgagagggagtcttgctgtgttgcccaggctaaagcatagtggggcaatctcagcttaccacaagctccgcctcctgggttctaggaattctcctgcctcagcctcctgagtagctgggattacaggcgctcctCTTGTAGCCTCGCCCGGCtacttgtatttttagcagagat-gggtttcactatcttggccaggctggtctcaaactcgtgacct-gtgatccacccacctccgcctcccaaagtgctgggattgcaggcatgagccaccgcgcctggcc i papAnu2.chr1 C 0 C 0 e chlSab2.chr20_KE148049v1_random 212508 0 + 1557941 C e rheMac3.chr1 128382479 0 + 229590362 C e ponAbe2.chrUn 11277231 0 + 72422247 C e macFas5.chr1 125119451 0 - 227556264 C e nomLeu3.chr12 56849210 0 - 109391073 C e panTro4.chr1_GL389091_random 115651 0 + 179278 C a score=271297.000000 s hg38.chr1_KI270765v1_alt 82148 155 + 185285 CTCCCTTTCTATTTCTTCAAGACCTTTTTCGGATCCCTCCTGCGCAGGACCTAA-ACGGGCGGTGCCCTTACCCACTGGTCCCTCCCTGCCT-GCTGTCTTCGGAGCCCTAGCTCACCCGGAACGTTACTGCCCGCCGGTGACAGCGAGAGGACCAA s panTro4.chr1_GL389091_random 115651 154 + 179278 CTCCCTTTCTATTTCTTCAACACCTTTTTCGGATCCCTATTGCGAAGGACCTAG-G-GGGCCGTGCCCTTCCCCCCTGGTCCCTCCCTGCCT-GGTGTCTTAGGAGCCCCAGCTCACCCTGAACATTACTGCCCGCCGGAGACAGCTAGAGGACCAA i panTro4.chr1_GL389091_random C 0 I 11 s ponAbe2.chrUn 11277231 155 + 72422247 CTCCCTTTCTATTTCTTCAAGACCTTTTTCGGATCCCTACTGCGAAGGACCTAC-GGGGCCGGTGCCCTTCCCCACTGGTCCCTCTCTGCCT-GGTGTCTTAGGAGCCCCGGCTCACCCTGAACATTACTGCCTGCCGGAGACAGCTACAGGACCAA i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56849210 156 - 109391073 CTCCCGTTCTACTTCTTCAAGACCTTTTACAGATCCCTACTGAGAAAGACTTAA-GGGGCCGATGCCCTTCCCTAATGGTCCCTCCCTGGCTGGGTGTCTTCGGAGCCCAAGCTCACCCGTAAGGTTACTGCCCGCCGGAGACAGCGAGAGGACCAA i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128382479 155 + 229590362 CTCCCGTTCTATTTCTTCAAGAGTTTTTTCGGATCCCTACTGAGAAGGAACTAA-G-GGCCGGTGCCCTTTCCTACCGGTCCCTCTCTGGCGGGGTGTCTTTGGCGCCCAAGTTCACCTGGCACTTTGCTACCTGCCTCAGACAGCGAGAGGACAAA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 125119451 155 - 227556264 CTCCCGTTCTATTTCTTCAAGAGTTTTTTCGGATTCCTACTGAGAAGGAACTAA-G-GGCCGGTGCCCTTCCCTACCGGTCCCTCTCTGGTTGGGTGTCTTTGGCGCCCAAGCTCACCTGGAACTTTGTTGCTTGCCTGAGACAGCGAGAGGACCAA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98649730 149 - 220367699 ctcc----cTATTTCTTCAAGA-CCTTTTGGGATCCCTCATGCGCAGGACCTAAGG-GGGTGGTGCCCTTCCCTACTGGTCCCTCCCTGCCT-AGTGTCTTCGGAGCCCTAACACACCC-GAACGTTACTGCTCCCCGATGACAGCAAGAGAACCAA i papAnu2.chr1 C 0 C 0 s chlSab2.chr20_KE148049v1_random 212508 155 + 1557941 CTCCCGTTCTATTTCTTCAAGAGTTTTTTCGGATCCCTACTGAGAAGGAACTAA-G-GGCCGGTGCCCTTCCCTACCGGTCCCTCTCTGGTTGGGTGTCTTTGGCGCCCAAGCTCACCTGGAACTTTGCTGCTTGCCTGAGACAGCGAGAGGACAAA i chlSab2.chr20_KE148049v1_random C 0 C 0 a score=16142.000000 s hg38.chr1_KI270765v1_alt 82303 12 + 185285 AGAGGGCAGCGG s ponAbe2.chrUn 11277386 12 + 72422247 GGAGCGAGGCCC i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56849366 12 - 109391073 GGAGGGCGGCGG i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128382634 12 + 229590362 GGAGGGCGGCGG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 125119606 12 - 227556264 GGAGGGCGGTGG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98649879 12 - 220367699 AGAGGGCGGCGG i papAnu2.chr1 C 0 C 0 s chlSab2.chr20_KE148049v1_random 212663 12 + 1557941 GGAGGGCGGCGA i chlSab2.chr20_KE148049v1_random C 0 C 0 e panTro4.chr1_GL389091_random 115805 11 + 179278 I a score=228540.000000 s hg38.chr1_KI270765v1_alt 82315 131 + 185285 GTGCGGT-------------------GGGAACCACAGAGTCACCGCGCACCTGCGCCTCGCGGGCTCCTCGCAAATTGAATAAACGCCCCCTGAAGCTTCTCTTCAAGTCACAGGGAAGGGGAAGGTGGCTGCC---------------------GACCCGGCGGGAGAAG s panTro4.chr1_GL389091_random 115816 152 + 179278 GTGCGGT-------------------GGGAACCACAGAGTCACTGCGCACCTGCACCTAGCGGGCTCCTAGAAAATTGAATAAATGCCCCCTGAAGCTTCTCTGCAGGTCACAGGGAAGAGGAGGGTGGCTGCCCCCACACGGGAGAGGCTTCAAGAAGCGTCAGGAGGAC i panTro4.chr1_GL389091_random I 11 C 0 s ponAbe2.chrUn 11277398 151 + 72422247 -TGTGGT-------------------CGGAACCACAGCGTCACTGGGCACCTGTGCCTCGCGGGCTCCTAGCAAATTGAATAAATGCCCCCTGAAGCTTCTCTGCAGGTCACAGGGAAGGGGAGGGTGGCTGCCGACACAGGAGAGAAGCTTCAAGAAGCGTCGGGAGGAC i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56849378 152 - 109391073 GTGCGGT-------------------GGGAACCACAGAGTCACCGGGCACCTGCGCCTCGTGGGCTCCTAGCAAATTGAATAAATGACCCCTGAACCTTCTCTGCAGGTCACAGGGAAGGGGAGGGTGGGGGCCGACCCGCGGAAGAAGCTTCAAGAAGCATCGCGAGGAC i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128382646 117 + 229590362 GTGAGGT-------------------GGGAACCACAGAGTCA-CGCGCACCTGCGCCTCCTGGGCTCCTAGCAAATTGAATAAATGCCCCCTGAAGCTTCTCTGCAGGTCACAGGAAAGGGGAGGGT----------------------------------GCGGGAGAAG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 125119618 131 - 227556264 GTGAGGT-------------------GGGAACCCCAGAGTCACCTCGCACCTGCGCCTCCTGGGTTCCTAGCAAATTGAATAAATGCCCCCTGGAGCTTCTCTGCAGATCATAGGGAAGGGGAGGGTGGCTGCT---------------------GACCCAGCGGGAGAAG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98649891 150 - 220367699 GTACGATGGGAACCACAGGGTACGACGGGAACCACAGGGTCACCGCAGACCGGCGCCTCACGGGCTTCTAGCAACTTGAATAAATGCCCCCTGAAGCTTCTCTTCAAGTCACAGGGAAGAGGAAGGTGGCTGCC---------------------GACCCTGCGGCAGAAG i papAnu2.chr1 C 0 C 0 s chlSab2.chr20_KE148049v1_random 212675 129 + 1557941 GTGCGGT-------------------GGGAAC--CAGAGTCACCGCGCCCCTGCGCGTCCTGGGCTTCTAGCAAATTGAACAAATGCCCCCTGGAGCTTCTCTGCAGGTCATAGGGAAGGGGAGGTTGGCTGCC---------------------CACCCAGCGGGAAAAG i chlSab2.chr20_KE148049v1_random C 0 I 24 a score=2800.000000 s hg38.chr1_KI270765v1_alt 82446 2 + 185285 CC s panTro4.chr1_GL389091_random 115968 2 + 179278 CT i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 11277549 2 + 72422247 CT i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56849530 2 - 109391073 CT i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128382763 2 + 229590362 CT i rheMac3.chr1 C 0 I 22 s macFas5.chr1 125119749 2 - 227556264 CT i macFas5.chr1 C 0 I 22 s papAnu2.chr1 98650041 2 - 220367699 CC i papAnu2.chr1 C 0 I 15 e chlSab2.chr20_KE148049v1_random 212804 24 + 1557941 I a score=185291.000000 s hg38.chr1_KI270765v1_alt 82448 93 + 185285 GGCCCTGCCCCTGGTCCTTGAAGACAGGTTTGGCCAGGCTGATTTTGACTGGTAGGCTCAAAGAAAAGCCTCAAGGGCAGACCAAACTCCGA-C s panTro4.chr1_GL389091_random 115970 93 + 179278 GGCCCTGCCCCTGGGCCTTGAAGACAGGCCTAGCCAGGCTGACTTTGTCCGGCAGGCTCAAAGAAAGGGTTCAAGGGTGGCCCAAACCTCGA-C i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 11277551 93 + 72422247 GGCCCTACCCCTGGGCCTTGAAGACAGGCCTGGCCAGGCTGATTTTGTCCGGCAGGCTCAAAGAAAAGGTTCAAGGGTGGCCCAAACCTCAA-C i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56849532 93 - 109391073 GGCCCTGCCCCTGGGCCTTGAAGACAGGCCTGGCCAGGCTCATTTTGTCGCCTAGGCCCAAAGAAAAGGGTCAAGAGCGGCCCAAACCCTGA-C i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128382787 93 + 229590362 GGCCTTGCCCCTGGGCCTTGAAGACAGGCCTGGCCAGGCTGATTTTGACGAGTAGGCCCAAAGAAAAGGTTCAAGGGCGGCCCAAACCCCGAC- i rheMac3.chr1 I 22 N 0 s macFas5.chr1 125119773 92 - 227556264 GGCCCTGACCCTGGGCCTTGAAGACAGGCCTGACCAGGCTGATTTTGACGAGTAGGCCCAAAGAAAAGGTTCAAAGGCGGCCCAAACCCTGA-- i macFas5.chr1 I 22 C 0 s papAnu2.chr1 98650058 92 - 220367699 GGCTCTGCCCCTGGTCCTTGAAAACAggtttggccaggctgattttgacgGGTAGGCCCAAAGAAAAGACTCAAAGGCAGACCAAACTCTGA-- i papAnu2.chr1 I 15 C 0 s chlSab2.chr20_KE148049v1_random 212828 92 + 1557941 GGCCCTGCCCCTGCGCCTTGAAGACAGGCCTGGCCAGACTGATTTTGACGAGTAGGCCCAAAGAAAATGTTCAAGGGCGGCCCAAACCCTGA-- i chlSab2.chr20_KE148049v1_random I 24 C 0 a score=1560.000000 s hg38.chr1_KI270765v1_alt 82541 4 + 185285 AGGC s panTro4.chr1_GL389091_random 116063 1 + 179278 ---C i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 11277644 1 + 72422247 ---C i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56849625 1 - 109391073 ---C i nomLeu3.chr12 C 0 C 0 s macFas5.chr1 125119865 1 - 227556264 ---C i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98650150 1 - 220367699 ---C i papAnu2.chr1 C 0 C 0 s chlSab2.chr20_KE148049v1_random 212920 1 + 1557941 ---C i chlSab2.chr20_KE148049v1_random C 0 C 0 a score=86310.000000 s hg38.chr1_KI270765v1_alt 82545 52 + 185285 -TCCGAGATTAA-GGCTTTCAAAC--GTCTGATCGTTTTCAGCTTGGTCAGTAAAA s panTro4.chr1_GL389091_random 116064 51 + 179278 -T-CGAGATTAA-GGCTCTTAAAT--GTCTGACGGTTTTGAGACTCTTCAGTAGAA i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 11277645 51 + 72422247 -C-CGAGATTAA-GGCTCTTAAAT--GTCTGACGGTTTTGAGACTCTTCAGTAGAA i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr12 56849626 51 - 109391073 -T-CGAGATTAA-GGCTCTTAAAT--GTCTGACGGTTTTGAGACTTGTCTGTAGAA i nomLeu3.chr12 C 0 C 0 s rheMac3.chr1 128517455 54 + 229590362 CC-AGAGATTAA-GGCTCTTAAATAAGTCTGACGGTTTTGAGAATCATCATTAGAA i rheMac3.chr1 N 0 N 0 s macFas5.chr1 125119866 54 - 227556264 CC-CGAGATTAA-GGCTCTTAAATAAGTCTGACAGTTTTGAGAATCATCATTAGAA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 98650151 53 - 220367699 CC-CAAGATTAAGGGCTTTCAAAT--GTCTGATCGTTTTCAGGTTGGTCAGTAGAA i papAnu2.chr1 C 0 C 0 s chlSab2.chr20_KE148049v1_random 212921 54 + 1557941 CC-GGAGATTAA-GGCTCTTAAATAAGTCTGACGGTTTTGAGAATCATCATTAAAA i chlSab2.chr20_KE148049v1_random C 0 C 0 a score=104461.000000 s hg38.chr1_KI270765v1_alt 82597 47 + 185285 TCGATCCCGCCTTTAT-------CAGGAGATTCCTTTGCCAAAGTTCAGAGACC s panTro4.chr1_GL389091_random 116115 47 + 179278 TTGATCCCGCCTGTAT-------CAGGAGAATCCTTTGCCAATATTCAGAGACC i panTro4.chr1_GL389091_random C 0 I 18803 s ponAbe2.chrUn 11277696 47 + 72422247 TCGATCCCGCCTGTAT-------CAGGAGACTCCTTTGCCAAAATTCAGAGACC i ponAbe2.chrUn C 0 N 0 s nomLeu3.chr12 56849677 54 - 109391073 TCGATCCCGCCTGTATCCGGAGACCGGAGACTCCTTTGCCAAAATTCAGAGACC i nomLeu3.chr12 C 0 T 22350 s rheMac3.chr1 128382943 47 + 229590362 TCGATCCCGCCTGTAT-------CAGGAGACTCCTTCGCCAAAATTCAGAGACC i rheMac3.chr1 N 0 N 0 s macFas5.chr1 125119920 47 - 227556264 TCGATCCCGCCTGTAT-------CAGGAGACTCCTTTGCCAAAATTCAGAGACC i macFas5.chr1 C 0 I 7 s papAnu2.chr1 98650204 47 - 220367699 TCAATTCCATCTTCAT-------CAGGAGATTCCTTTGCCAAAATTCAGAGACC i papAnu2.chr1 C 0 C 0 s chlSab2.chr20_KE148049v1_random 212975 47 + 1557941 TCGATCCCACCTGTAT-------CAGGAGACTCTTTTGCCAAAATTCAGAGACC i chlSab2.chr20_KE148049v1_random C 0 N 0 a score=43723.000000 s hg38.chr1_KI270765v1_alt 82644 190 + 185285 TGGGGTtcccgctgcttgccacacagaaaaccgatcactgagacggttattgccaaggaagaggctttaatagggtgctgcagcggaggagatgagaactcagtctcaaatccatctccctgaccaac----caaaactagaggcttagatggcagggaaagaatgtgacaatgtgtaagaaaacaggaac-tag s nomLeu3.chr12 56827381 190 - 109391073 tgggattcctgctgcttgctgcacagaaagccaatcactgagatgattattgcaaaggaaggggctttaatagggtgctgcagtgggggaaatgagaactcagtctcaaatccatctccctgaccaat----caaaactagaggtttagatggcagggaagaaacgtaacaatgtgtaagaaaacaggaag-tag i nomLeu3.chr12 T 22350 I 22167 s papAnu2.chr1 98650251 194 - 220367699 TGGGGTTCCTGCTGCTTGCcccacagaaagccaatcactgagatgatTATTGCCAAGGAAGAGGCTTTAGTAGGGTGCTGCAGCAGAGGAGATGAgaactcagtctcaaatccatctccctgaccaacCAATCAATACCAGAGGCTTAGATGGCc-gaaagaaatgtaacaatgtgtaagaaaacaggaacatag i papAnu2.chr1 C 0 C 0 e macFas5.chr1 125119967 7 - 227556264 I e panTro4.chr1_GL389091_random 116162 18803 + 179278 I a score=25374.000000 s hg38.chr1_KI270765v1_alt 82834 334 + 185285 accaggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcggatcacgaggtcaggagatcgagaccatcctggctaacatggtgaaaccccgtctctactagaaatacgaaaagaaattagccgggcgtggtggcgggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccgggaggcggagcttgcagtgagccaagatagcgccactgcactccagcctgggaggcagagggagactctgtcgcaaaaagaaaaaaaaaaaaaaaaaaagaaagaaaagaaagaaaacaggaact s papAnu2.chr1 98650445 327 - 220367699 gccgggcgcggtggctcaagcctgtaatcccagcactttgggaggccgagacgggtggatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaaccccgtctctactaaaaa-atacaaagaaactagccgggcgaagtggcgggcgcctgtggtcccagctactcgggaggctgaggccggagaatggcgtaaacctgggaggcggagcttgcagtgagctgagatccggccactgcactccagcctgggcgacagagccagattcagtttcaaaaaaaaaaaaaaaaaaaaaaaaagaaa------aaagaaaacaggaact i papAnu2.chr1 C 0 N 0 e macFas5.chr1 125119967 7 - 227556264 I e nomLeu3.chr12 56827571 22167 - 109391073 I e panTro4.chr1_GL389091_random 116162 18803 + 179278 I a score=0.000000 s hg38.chr1_KI270765v1_alt 83168 211 + 185285 agggaggggcaaggaagcaatcaggatgaatgaggggtccggcatctcattgtctgggtgactttcagttctttgatatcttttttgagaggcctgaaggaaggaactcaaataaaacaaatatcgagtttcaaactttcagatcagaagggtccaattctatgtttatccaaaaatctacgtatgggactattgggtgggtttcaGACCA e macFas5.chr1 125119967 7 - 227556264 I e nomLeu3.chr12 56827571 22167 - 109391073 I e panTro4.chr1_GL389091_random 116162 18803 + 179278 I a score=24179.000000 s hg38.chr1_KI270765v1_alt 83379 147 + 185285 AGAAAGAGTGTGCATATCAAAGTCTGCGGTTAA-CCAAagagaaaacataa-ttttccgaccaataggatgtatgggggtcaaagaacgaccagcctacagta----ctg-tttattggcctgagcatacggaaggatgaagttg-caccagcga s nomLeu3.chr12 56849738 153 - 109391073 AGAAAGATTGGGCAGATCAAAGTCTGTAATTAACCCAAACAGGAaacatgatttttctgacaaattgtatgtgt-gctatgagaaaaagactagcctcaaggagaatctg-ttttttggcttgagtgtagggaagaatggaattgccaccaacaa i nomLeu3.chr12 I 22167 C 0 s macFas5.chr1 125119974 154 - 227556264 AGAAAGATTGGGCAGATCAAAGTCTGTAATTAACCCAAACAGGAaacataattcttctgaaaaacagtatgtgt-gctatgagaaaaagactagcctcaaggagaatctgtttttttggcttgagtgtagggaagaatggagttgccaccaacAA i macFas5.chr1 I 7 N 0 e panTro4.chr1_GL389091_random 116162 18803 + 179278 I a score=938.000000 s hg38.chr1_KI270765v1_alt 83526 23 + 185285 -aatgggATTAAGCTGCAGGTGCG s nomLeu3.chr12 56849891 24 - 109391073 tgatgCGTTGAAATGGCAGGTGCG i nomLeu3.chr12 C 0 N 0 e panTro4.chr1_GL389091_random 116162 18803 + 179278 I a score=0.000000 s hg38.chr1_KI270765v1_alt 83549 1 + 185285 g e panTro4.chr1_GL389091_random 116162 18803 + 179278 I a score=3884.000000 s hg38.chr1_KI270765v1_alt 83550 132 + 185285 gctgggcgcggtagctcacacctgtaatcccagcactctgggaggctgaggtgggtggatcacttgagatcaggag-------tt---------tgaga----------------ccagcctgaccaacatggtgaaacctcgtctctaataaaaatacaaaaa s macFas5.chr6 49877634 164 + 181584905 gccaggcgaggtggcggatgcctgtaatcccagctacccgggaggctgaggcaggagaatggcgtaaacccagaaggcggagcttgcagtgagctgagattcgggccactgcactccagcctgggcgacaaagccagatttggtcttaaaaaaaaaaaaaaaaa i macFas5.chr6 N 0 I 79 e panTro4.chr1_GL389091_random 116162 18803 + 179278 I a score=0.000000 s hg38.chr1_KI270765v1_alt 83682 74 + 185285 ttagccgggcgtcatggcgggcaccggtagtcccagctactagggaggctgaggcaggagaatcatttATTAGT e macFas5.chr6 49877798 79 + 181584905 I e panTro4.chr1_GL389091_random 116162 18803 + 179278 I a score=1450375.000000 s hg38.chr1_KI270765v1_alt 83756 878 + 185285 aaggtcatttattagtaaggaacagaagcaagcaccaagatttaaggcaggaagggataggctaactctactgctttgtgcaaatgtagtcgggtttatgatcagggctgcccttaactataaagctgctaacccctgagtcttgaaagggaaaagagaaacactagttgccagtcttttggttgtacaacaagaaggcctggactatgagaatgctttttctggattagttccatcaatgctttgtccctgaagtcagaagtaccttgccaataagggactgctttttaaagttttttgttgttgtt--gttgtttaattggaaaatgccccctggccacccagaaccccatgagttcaacaccaaaggcactgaagtgttctcctttccccccaaacacatctctacttcagcttctagataagggagtcataaggacctttaaggctctacatatggcactctatggaaagatttgtcaacattccaaaagagaaacccaatagagagaacatcatggaagtctgggaggcttacacctttcaagatgtcatcagttgatatagaaaa-----------ccatgaaactcaaaacaataaattcctgctggacaaaagtacaatttgtgtccagatgttgtgcatagctacagaattacgacaaacccaatttagagaaaaccatggaaagaagtatggatatgaagggaaaaaaaggtgtggagtgaagggttgtaagatatggatcttggaggaatttaagagctaatacacaccacaccagaggaattaacaaaagatgacttcatggagatgagtgcttcctaaccagtgccagataatgaggaagaagacataggaaaagcagtgccagaaaacaaattggca s panTro4.chr5 117704781 887 - 182651097 aaggacatttattcataaggaggagaagcaagcaccaagatttaaggcaggaaaggataggctaactctactgctttgtgcaaatgtagtcgggtttatgatcagggctgcccttaactataaagctgctatcccctgagtcttgagagggaaaagagaaacactagttgccagtcttttggttgtacaacaagaaggcctggactatgagaatgctttttctggattggttccatcaacgctttgtccctgaagtcagaagtaccttgacagtaagggactgctttttaaagtatttt--tgttgtt--gttgtttaattggaaaatgccccctggccacccagaaccccgtgagtccaacaccaaaggcaccgaagtggtctccttttcccccaaacacatctctaattcagcctctagataagggagtcacaaggacctttaaggctctgcacatggcactctgtggaaaggtttgtcaacactacaaaagagaactccaatagagagaacatcatggaagtctggaaggcttacacctttgaagatgtcatcaggtgatatagaaaaagtcatgaaaaccatgacactcaaaacaataagttcccgctggacagaagtacaatttgtgtccagatgttgtgcataactacagaattatgacaaacccaattaagaaaaaaccctggaaagaagtatggatatgaagggaaaaaaaggtgtggagtgaagggttgcaagatatggatctcagaggaagttaagagctaatagacaccacaccagaggaattaacaaaagatgacttgatggagatgagtacttcctaaccagtgccagataatgaggaagaagacataggaaaagcagtgccagaaaacaaattggca i panTro4.chr5 n 18803 C 0 s ponAbe2.chr5 48779102 883 + 183952662 aaggacatttattaataaggaggagaagcaagcaccaagatttaaggcaggaagggataggctaactctactgctttgtgcaaatgtagtcgagtttatgatcagggctgcccttaactataaagctgctatcccctgagtcttgaaagggaaaagagaaacactagttgccagtcttttggttgtacaacaagaaggcctggactatgagaatgctttttctggattggttccatcaatgctttgttcctgaagtcagaagtaccttgccagtaagggactgctttttaaagtttttt--tgttgtt--attgtttaattggaaaatgtcccctggccacccagaaccccgtgagttcaacaccaaaggcactgaagtggtctccttttcccccaaacacatctctaattcagcctctagataagggagtcataaggacctttaaggctctacacatggcactgtatggaa--gtttgtcaacactacaaaagagaaccccaatagagagaacatcgcagaagtctggaaggcgtacacctttgaagatgtcatcagctgatatagaaaaagtcgtgaaaaccatgaaactcaaaacaataaattcctgctggacaaaagtacaatttgtgtccagatgttgtgcataactacagaattacgacaaacccaattaagaaaaaaccctggaaagaagtatggatatgaagggaaaaaaaggtgtggagtgaagggttgcaagatatggatcttggaggaatttaagagctaatagacaccacaccagaggaattaacaaaagatgacttgatgcaggtgagtacttcctaaccagtgccagataatgagg--gaagacataggaaaagcagtgccagaaaacaaattggca i ponAbe2.chr5 N 0 C 0 s rheMac3.chr6 48554539 887 + 180491593 aaggacatttattagtaaggaagagaagcaagcaccaagatttaaggcaggaagggacaggctaactccactgcttcgtgcaaatgtagtcgggtttatgatcagggctgcccttagctataaagttgctaacccctgagtcttga-aaggaaaagatgaacactagttttcagtcctttggttgtagaacaagaaggcctggacaatgagaatgctttttttggattggttccatcaatgctttgtccctgaagtcagaagtaccttgccagtaagggactgttttttaaagtttttt--gtttgtttgtttgtttaattggaaagtggcccctggccacccagaaccccgtgagtttaacaccaaaggcaccgaagtggtctccttttcccccaaacacatctctaattcagcctctaggtaagggcgtcataagaccctttaaggctctacacatggcattttgtggaaa-gtttgtcaagactacgaaagagaaccccgatagagagaatatcatggaagtctggaaggctcacacctttgaagatgtcatcagttgatataggaaaagccgtgaaaaccatgaaactcaaaacaataaattcctgctggacaaaagtacaatttgtgtctatatgtcatgcatgactacagaattatgacaaacccaattaagaaaaaaacatagaaagaagtgtggatatgaagggaaaaaatggtgtggagtgaagggttgcaagatatggatcttggaggaatttaagaggtaatagaccccacaccagaagaattaacaaaagatgacttgatggagatgagtacttcctaaccactgtcagacaatgacgaagaagacatagaagaagcagtgccagaaaacaaattgaca i rheMac3.chr6 N 0 C 0 s macFas5.chr6 49877877 887 + 181584905 aaggacatttattagtaaggaagagaagcaagcaccaagatttaaggcaggaagggacaggctaactccactgcttcgtgcaaatgtagtcgggtttatgatcagggctgcccttagctataaagttgctaacccctgagtcttga-agggaaaagatgaacactagttttcagtcctttggttgtagaacaagaaggcctggacaatgagaatgctttttttggattggttccatcaatgctttgtccctgaagtcagaagtaccttgccagtaagggactgctttttaaagtttttt--gtttgtttgtttgtttaattggaaagtggcccctggccacccagaaccccgtgagtttaacaccaaaggcaccgaagtggtctccttttcccccaaacacatctctaattcagcctctaggtaagggcgtcataagaccctttaaggctctacacatggcattttgtggaaa-gtttgtcaagactacgaaagagaaccccgatagagagaatatcatggaagtctggaaggctcacacctttgaagatgtcatcagttgatataggaaaagccgtgaaaaccatgaaactcaaaacaataaattcctgctggacaaaagtacaatttgtgtctatatgtcatgcatgactacagaattatgacaaacccaattaagaaaaaaacatagaaagaagtgtggatatgaagggaaaaaatggtgtggagtgaagggttgcaagatatggatcttggaggaatttaagaggtaatagaccccacaccagaagaattaacaaaagatgacttgatggagatgagtacttcctaaccactgtcacacaatgacgaagaagacatagaagaagcagtgccagaaaacaaattggca i macFas5.chr6 I 79 C 0 s chlSab2.chr4 46897203 887 + 91010382 aaggacatttattagtaaggaagagaagcaagcaccaagatttaaggcagaaaggggcaggctaactccactgcttcgtgcaaatgtagttgggtttatgatcagggctgcccttagctataaagttgctaacccctgagtcttga-agggaaaagatgaacactagttgtgagtcctttggttgtagaacaagaaggtctggacaatgagaatgctttttttggattggttccatcaatgctttgtccctgaagtcagaagtaccttgccagtaagggactgctttttaaagtttttt--gtttgtttgtttgtttaattggaaagtggcccctggccactcagaaccccatgagttcaacaccaaaggcaccgaagtggtctccttttcccccaaacacatctctaattcagcctctaggtaagggcgtcataagaccctttaaggctctacacatggcattctgtggaaa-gtttgtcaagactatgaaagagaaccccgatagagagaatatcatggaagtctggaaggcttacacctttgaagatgtcatcagttgatataggaaaagccgtgaaaaccatgaaactcaaaacaataaattcctgctggacaaaagtacaatttgtgtctatatgttgtgcatgactacagaattatgacaaaccccattaagaaaaaagcatggaaagaagtgtggatatgaagggaaaaaatggtgtggagtgaagggttgcaagctatggatcttggaggaatttaagagctaatagacaccacaccagaggaattaacaaaagatgacttgatggagatgagtacttcctaaccagtgtcagacaatgactaagaagacgtagaagaagcagtgccagaaaacaaattggca i chlSab2.chr4 N 0 C 0 s calJac3.chr2 47245154 831 - 204313951 aaggacatttattagttaggaagagaagcaagcaccaagatttaaggcaggaagggagaggctaactccactgctttgtgcaaatatagtcaggtttatgatcagggctgcccttagctataaagctgctaacacctgagtcttga-agggaaaagataaacactagttgccggtcttttagttgtacaacaagaaggcctggacaattagaatgctttctctggattggttccatcaacgctttgtccctgaagtcagaagtactttgtcagt----------------aagttgttt-----------tttttttaattggaaaatgccccctggccacccagaaccctgtgagttcaacaccaaaggcaccaaagtggtctcctcg-ccatcaagcacatctctaattcagcctctagagaagggagtaataaggatttttaaggctctacacacggcac--tacggaaaggtttgtcaacactatgaaagagaaccccaaaagagagaacatcatagaagtctggaaggcttacacctttgaagatgtcatcagttgatagagaaaaagccatgaaaaccattaaacttgaaacaa------------------aagta-------tgtacagatgttgtgcatgactgcagaattatgacagactcagtcaaga-aaaatcatttaa--aaatgtggatacgaagggaaaaaa-ggtggtgagtgaatggttgcaaaatatggatcttggaggaatttaagagctaatagacaccacaccagaggaattaacaaactacgacttgatggagatgagtacttcctaatcagtgccagataatgaggaagaagacatacaagaagcagtgccagaaaacaaatcggta i calJac3.chr2 N 0 C 0 a score=511249.000000 s hg38.chr1_KI270765v1_alt 84634 217 + 185285 ttcaacaatctggcaaaagaactttgattattcaagactacttttgacttcttttatgacatagaccgttccatgatacaggaactgaaactaaagcaaatggtggaagacggataggtactacactgaaatgtttttagagaaatgaaaaagcaaaatagacagaaataatgatgtatttttgtaaagtctcaccaagtgtgcttgcctcttttgc s panTro4.chr5 117705668 215 - 182651097 ttcaacaa-ctggcaaaagggttttgattattcaagactacttttgacttcttttatgacatagacccttccatgatacaggaactgaaactaaggcaaatggtggaagacggatgggtactacaccgaaatgtttt-agagaaatgaaaaagcaaaatagacagaaataatgatgtatttttgtaaagtttcaccaagtgtgcttgccttttctgc i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48779985 217 + 183952662 ttcaacaatctggcaaaagggttttgattattcaagactacttttgacttcttttatgacatagacccttccatgatacaggaactgaaactaaggcaaatggtggaagacggataggtactacaccgaaatgtttttagagaaatgaaaaagcaaaatagacagaaataatgatgtatttttgtaaagtttcacaaagcgtgtttgccttttctgc i ponAbe2.chr5 C 0 C 0 s rheMac3.chr6 48555426 217 + 180491593 ttcaacaatctggcaaaagggttctgattattcaagactgcttttgacttcttttatgacatagacccttccatgatacaggaactgaaactaaggcaaatagtggaagatgggtaggtactacattgaaatgtttttagagaaatgaaaaagcaaaatagacagaaataatggtgtatttttgtaaagtttcaccaagtatgcttgcctcttctgc i rheMac3.chr6 C 0 C 0 s macFas5.chr6 49878764 217 + 181584905 ttcaacaatctggcaaaagggttctgattattcaagactgcttttgacttcttttatgacatagacccttccatgatacaggaactgaaactaaggcaaatagtggaagatgggtaggtactacattgaaatgtttttagagaaatgaaaaagcaaaatagacagaaataatggtgtatttttgtaaagtttcaccaagtgtgcttgcctcttctgc i macFas5.chr6 C 0 C 0 s papAnu2.JH683014 5735 217 + 14956 TTCAACAATCTGGCAAAAGGGTTCTGattattcaagactgcttttgacttcttttatgacaTAGACCCTTCCATGATACAGGAACTGAAACTAAGGCAAATAGTGGAAGATGGATAAGTACTACATTGAAatgtttttagagaaatgaaaaagcaaaatagacaGAAATAATGgtgtatttttgtaaagtttcACCAAGTGTGCTTGCCTcttctgc i papAnu2.JH683014 N 0 C 0 s chlSab2.chr4 46898090 217 + 91010382 ttcaacaatctggcaaaagggttctgattattcaagactgcttttgacttcttttatgacatagacccttccatgatacaggaactgaaactaaggcaaatagtggaagatggataggtactacattgaaatgtttttagagaaatgaaaaagcaaaatagacagaaataatggtgtatttttgtaaagtttcaccaagtgtgcttgcctcttctgc i chlSab2.chr4 C 0 C 0 s calJac3.chr2 47245985 213 - 204313951 tccaacaatctggcaaaagggttctgattattcaagattgcttttgactgcttttttgacgtagacctttccatgataaaggaactgaaactaaggcacatggtagaggaaggataggtactatatcaaaatgtttttagataaatgaaaaagcaaaat----agaaataatgatgtatttttgtaaagttacaccaagtgtgcttgcctctcctgc i calJac3.chr2 C 0 C 0 a score=1122132.000000 s hg38.chr1_KI270765v1_alt 84851 398 + 185285 ttccccttccatcccttcaccctcttccacctctgctaccctaagacacaaagaccag---c------------tcctcctcctcctcctctgcctactcaacatgaacacaacaatgatgaagacctttaggatgatccacttccacttaatgaatgggtcatatatttt-ctcttccttacaattttcttgactataatttcttttctgtagcttagtttattgtaagaatacagtatataatacacatagcatgcaaaatatgtcttaaatgtaacg--catgttatcagtaagccttctggtcaacaataggttattagtagtttggggggaatcaaaatttgtatgcagatttttcactgtgtgggaggccagctcccctaaccctatattgt---------------------------------------------tcaaggggcaacAATATT s panTro4.chr5 117705883 394 - 182651097 ttccccttccatcccgtccccctcttccacttctgctaccctaagacagaaggaccag---c------------tcctcctcctcctc---tgcctactcaacatgaagacaacaataatgaagacctttaggatgatccacttccacttaatgaatgggtgatatatttttctcttccttacaattttcttgattatgatttcttttctgtagcttagtttattgtaagaatacagtatataatacacataacatgcaaaatatatcttaaatgtaaca--c--gttatcaataagccttctggtcaacaataggttattcatagtttggggggagtcaaaagttgtatgcggatttttcactgtgtgggaggccagcttccctaaccctatgttgt---------------------------------------------tcaaggggcaaTAATATT i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48780202 396 + 183952662 ttccccttccatcccttccccctcttccacttctgctaccctaagacagaaagaccag---c------------tcctcctcctcctc---tgcctactcatcatgaagacaacaataatgaagacctttaggatgatccacttccacttaatgaatgggtcatatatttttctcttctttacaattttcttgattataatttcttttctgtagcttagtttagtgtaagaatacagtatataatacacataacatgcaaaatatgtcttaaacgtaaca--catgttatcagtaagccttctggtcaacaataggttattcgtagtttggggggagtcaaaagttgtatgtggatttttcactgtgtgggaggccagctcccctaacccgatgttgt---------------------------------------------tcaaggggcaacAATATT i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54698858 395 + 109391073 tttcttttttatcacttcctcctcttaaacctctactaccctaagacagaaagaccag---c------------tcctcctcctcctcctctgcctgctcaacatgaagacaacaatgatgaagacctttaggatgatccacttccacttaatgaatgggtcatatatttt-ctcttccttataattttcttgattataatttcttttctgtatcttagtttattgtaagaatacagtatataatacccatagcatgcaaaatatgtcttaaatgtaaca--catgttatcagtaagc---ctggtcaacaataggttattagtagtttggggggagtcaaaagtagtatgtggatttttcactgtttgtgaggccagctcccctaaccctatgttgt---------------------------------------------tcaaggggcaacAATATT i nomLeu3.chr12 N 0 C 0 s rheMac3.chr6 48555643 441 + 180491593 ttccccttccatgccttctgcctcttccacctctgctaccccaagacagaaagaccag---c------------tcctcctcctcctcctctgcctactcaacatgaagacaacaatgatgaagacctttaggatgatctgcttccacttaatgaatgggtcatacatttt-ctcctccttacaattttcttgattataattttttttctgtagcttagtttattgtaagaatacagtatataatacacatagcatgcaaaatatgtcttaaacataaca--c--gttatcagtaagccttctggtcaacaataggctattagtagtttggggggagtcaaaagttgtatgtggatttttcactgtgtgggaggccagctcccctaaccctatgttgttcaaggggcaacAATATTCTTTCTCACTTCACCTTCCATAAATTATCAAGGGGCAACAATATT i rheMac3.chr6 C 0 C 0 s macFas5.chr6 49878981 396 + 181584905 ttccccttccatgccttctgcctcttccacctctgctaccccaagacagaaagaccag---c------------tcctcctcctcctccgctgcctactcaacatgaagacaacaatgatgaagacctttaggatgatctgcttccacttaatgaatgggtcatacatttt-ctcctccttacaattttcttgattataattttttttctgtagcttagtttattgtaagaatacagtatataatacacatagcatgcaaaatatgtcttaaacataaca--c--gttatcagtaagccttctggtcaacaataggctattagtagtttggggggagtcaaaagttgtatgtggatttttcactgtgtgggaggccagctcccctaaccctatgttgt---------------------------------------------tcaaggggcaacAATATT i macFas5.chr6 C 0 C 0 s papAnu2.JH683014 5952 398 + 14956 ttccccttccatgCCTTCTGCGTCTTCCACCTCTGCTACCCCAAGACAGAAagaccag---c------------tcctcctcctcctcctctgcctactcaacatgaagacaacaATGATGAAGACCTTTAGGATGATCTGCTTCCACTTAATGAATGGGTCATACATTTT-CTCCTCCTTACAATTTtcttgattataattttttttctgtagcttagtttattgtaagaatacagtatataatacacatagCATGCAAAATATGTCTTAAACATAACA--CATGTTATCAGTAAGCCTTCTGGTCAAcaataggctattagtagtttggggggagtcaaaagttgtaTGTGGATTTTTCACTGTGTGGGAGGCCAGCTCCCCTAACCCTATGTTGT---------------------------------------------TCAAGGGGCAACAATATT i papAnu2.JH683014 C 0 C 0 s chlSab2.chr4 46898307 401 + 91010382 ttccccttccatgccttctgcctcttccacctctgctaccccaagacagaaagaccagctcc------------tcctcctcctcctcctctgcctactcaacatgaagacaacaatgatgaagacctttaggatgatctgcttccacttaatgaatggctcatacatttt-ctcctcctttcaattttcttgattataatttttattctgtagcttagtttattttaagaatacagtatataatacacatagcatgcaaaatatgtcttaaacataaca--catgttatcagtaagccttctggtcaacaataggttattagtagtttggggggagtcaaaagttgtatgtggatttttcactgtgtaggaggccagctcccctaaccctatgttgt---------------------------------------------tcaaggggcaacAATATT i chlSab2.chr4 C 0 C 0 s calJac3.chr2 47246198 391 - 204313951 ttccccttcca---------cctcttccacctc-gagaccctaagacagcaagatcag---ctcctcctcatcttcctcctcctcctcctccgcctactcaaaatgaagacaacaatgatggagacctttaggatgatccacttccacttaatgaatgggtcacatacttt-ctcttccttacaattttcttgattataatttcttttctgtagcttagttttttgtaacaatacagtatataatacatatagcatgtaaaatacatgttaaacataaccgtcatgttatccacaaggctttttgtcaacgataggctat-----------aaggagtcaaaagttgtatgtggatttttgactgtgtgggaggccagctcccctaaccctatgttat---------------------------------------------tcaaggggcaacAGTATT i calJac3.chr2 C 0 C 0 a score=1074448.000000 s hg38.chr1_KI270765v1_alt 85249 320 + 185285 CTTTCTCACTGGCACTTTACTTTCCATAAATTCAAATCCCAAAAGTAGAACTGCAAGTTCAAAAGGATT-------------TTTAAAAA-------aataattactgtcagatt-----acagaaagtttccaatttacattttcactaccaatgtacaatgttggcatccctgaatccttatcagcaatgaattttt-aaatatactataagaga-tgaaaaaat-tt------ttttaaaatttggaattccctgatcactaa-tgaagttaagcatcAATATTATTCCTTTAATATGCAAATGCTGAAAATACATTTAACTATAATAGATGTCaaaaatctgtaaatcagg s panTro4.chr5 117706277 317 - 182651097 CTTTCTCACGGGTACTTTACTTTCCACAAATTCAAGTcccaaaagtagaactgcaagttcaaaaggatt-------------tttaaaaa-------aata----ctgccagatt-----acagaaaatttccaatttacattctcactaccaatgtacaatgttggcgtccctgaatccttatcagcaatgaattttt-aaatatactataaggga-tgaaaaaatatt------tttttaagtttgaaattccctgatcactaa-tgaagttaagcatcAATATTATTCCTTTAATATGCAAATGCTGAAAATACATTTAACTGTAATAGATGTCAAAAATCTGTAAATCAGg i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48780598 320 + 183952662 CTTTCTTGCTGGCACTTTACTTTCCATAAATTCAAGTCCCAAAAGTAGAACTGCAAGTTCAAAAGGATT-------------TTTAAAAA-------AATAATTACTTCCAGATT-----ACAGAAAGTTTCCAATTTACATTCTCACTACCAATGTACAATGCTGGCATCCCTGAATCCTTATCAGCAATGAATTTT---AATATACTATAAGTGA-TGAAAAAATATT------TgtttaaatttgaaattccctgatcactaattgaagttaagcatcAATATTATTCCTTTAATATGCAAATGCTGAAAATACATTTAACTAAAATAGATGTCAAAAATCTGTAAATCGGg i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54699253 320 + 109391073 CTTTCTCACTGGCACTTTACTTTCCATAAATTTAAATCCCAAAAGTAGAACTGCAAGTTCAAAAGGATT-------------TTTTAAAA-------AATAATtattgtcagatt-----acagaaagtttccaatttacattctcactaccaatgtacaatgttggcttccctgaatccttatcagcaataaattttt-aaatatactataaggga-tgaaaaaat-at------tttttaaatttgaaattccctgatcactaa-tgaagttaagcatcAATATTATTCCTTTAATATGCAAATGCTGAAAACACATTTAACTATAATAGATGTCAAAAATCTGTAAATCAGg i nomLeu3.chr12 C 0 C 0 s rheMac3.chr6 48556084 321 + 180491593 CTTTCTCACTGGCACTTCACCttccataaattcaagtcccaaaagtagaactgcaagttcaaaaggatt-------------tttaaaaa-------aatgattactgccagatt-----acagaaagtttccaatttacattctcactaacaatgtaccatgttggtgtccctgaatccttatcagcaataaattttt-aaatatactataaggga-tgaaaacatatt------tttgtaaatttgaaattccctgatcactaa-tgaagttaagcatcAATATTTTTCCTTTAATATGCAAATGCTGAAAATACCTCTAACTATAATAGATGTCAAAAATCTGTAAATCAGg i rheMac3.chr6 C 0 C 0 s macFas5.chr6 49879377 321 + 181584905 CTTTCTCACTGGCACTTCACCTTCCATAAATTCAAGTcccaaaagtagaactgcaagttcaaaaggatt-------------tttaaaaa-------aatgattactgccagatt-----acagaaagtttccaatttacattctcactaacaatgtaccatgttggtgtccctgaatccttatcagcaatgaattttt-aaatatactataaggga-tgaaaacatatt------tttgtaaatttgaaattccctgatcactaa-tgaagttaagcatcAATATTTTTCCTTTAATATGCAAATGCTGAAAATACCTCTAACTATAATAGATGTCAAAAATCTGTAAATCAGG i macFas5.chr6 C 0 C 0 s papAnu2.JH683014 6350 321 + 14956 CTTTCTCACTGGCACTTCACCTTCCATAAATTCAAGTCCCAAAAGTAGAACTGCAAGttcaaaaggatt-------------tttaaaaa-------aatgattactgCCAGATT-----ACAGAAAGTttccaatttacattctcactaacaatgtaccatgttggtgtccCTGAATCCTTATCagcaatgaattttt-aaatatactataaggga-tgaaaacatatt------tttgtaaatttgaaattCCCTGATCACTAA-TGAAGTTAAGcatcaatatttttcctttaatatgcaaatgctgAAAATACCTCTGACTATAATAGATGTCAAAAATCTGTAAATCAGG i papAnu2.JH683014 C 0 C 0 s chlSab2.chr4 46898708 321 + 91010382 CTTTCTCACTGACACTTCACCTTCCATAAATTCAAGTcccaaaagtagaactgcaagttcaaaaggatt-------------tttaaaaa-------aataattactgccagatt-----acagaaagtttccaatttacattctcactaacaatgtacaatgttggtgtccctgaatccttatcagcaatgaattttt-aaatatactataaggga-tgaaaacatatt------tttgtaaatttgaaattccctgatcactaa-tgaagttaagcatcAATATTTTTCCTTTAATATGCAAATGCTGAAAATACCTCTAACTATAATAGATGTCaaaaatctgtaaatcagg i chlSab2.chr4 C 0 C 0 s calJac3.chr2 47246589 322 - 204313951 CTTTCTCACTGGCACTTTAGTTTTCATAAATTCaagtcccaaaagtagaactgcaagttcaaaaggatt-------------tttaaaac-------aataattattgccagatt-----acagaaaatttccaatttacattttcaccaacaatgtacaatattggtgtccctgaatccttatcagcaatgaatTTTT-AAATATACTATAATGGATTTTAAAAATATT------TTttttaatttgaaattccatgatcactaa-tgaagttaagtatcAATATTATTCCTATAATATGCAAATGCTAAAAATACATATAACTATAATAGATGTCAAAAATCTATAAGCCAGg i calJac3.chr2 C 0 C 0 s canFam3.chr4 23962215 348 - 88276631 ctttcacactggtgttttaatttccataggctcaagtccccaaa----aactgctaagtcaagggttttttttttttttgtctttaaaaataatagcaataattattgccttattacttcacaggaaggttccaattcagatttccaccaacaacatataatgttggtatccctgaatcctcaccagcactgaatttttaaaatatagtctaatgga-acagaaaaaattagtttgcttttcaatttcaaattccctgat-actac-tgaaattaagcatcAACATTACTCCTTTAAAACACAAATACTGAAAACATGTGTAATTATAATAAATGTCAAGACTCTAGCAGCCAAG i canFam3.chr4 N 0 I 15 a score=615236.000000 s hg38.chr1_KI270765v1_alt 85569 216 + 185285 ctaggtgtggtaggcactcacctgtattcccagccactgggagacttgagtccaggagttccagactgtagtatgcaatgatcaagcctgtgaatagccactgcactccagcatggacaacatagcaagac-cccatctTTTT-----------TTAAAGAAAAGAGTCTAT------AAGACAAAGGTCCTCATAAATTAAGAGAAGCCAAGACAGTCACTGTGACTGCAGAA s panTro4.chr5 117706594 214 - 182651097 ccaggtgtagtaggcactcccctgtagtcccagccactgggagacttgagtccaggagttcaagactgtagtatgcaatgatcaagcctgtgaatagccactgcactccagagtggacaacatagcaagattcccatctctt--------------aaaaaaaaGAGTCTAT------AAGACAAAGGTCCTTGTAAATTAAGAGAAGCCAAAACAGTCACTGTGCCTGCAGAA i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48780918 216 + 183952662 ccaggtgtggtaggcacttacctgtagtcccagccactgggagacttgagtccaggagttcaagactgtagtacgcaatgatcaagcctgtgaatagccactgcactccagcgtggacaacatagcaagatccccatctctt------------aaaaaaaaGAGAGTCTAT------AAGACAAAGGTCCTTGTAAATTAAGAGAAGCCAAGACAGTCACTGTGCCTGCAGAA i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54699573 215 + 109391073 ccaggtgtggtaggcactcacctgtagtcccagccactgggagacttgagtccaggagttcaagactgtagtatgcaatgatcaagcctgtgaatagccactgccctccagcgtggaaaacatagcaagac-cccatctctt------------aagaaaaaaaGAGTCTAT------AAGACAAAGGTCCTCATAAATTAAGAGAAGCCAAGACAGTCACTGTGCCTGCAGAC i nomLeu3.chr12 C 0 C 0 s rheMac3.chr6 48556405 214 + 180491593 tcaggtgtagtagacattcacctgtagtcccagccactgggagatttgagtccaagagttcaagactgtagtatgcaatgattgagcctgtgaatagtcactgcactccagcctggacaacatagcaagac-cccatctctt-------------aaaaaaaaaGAGGCTAT------AAGACAAAGGTCCTCATAAATCAAGAGAAGCCAAGACAGTCACTGTGCCTGAAGAA i rheMac3.chr6 C 0 C 0 s macFas5.chr6 49879698 214 + 181584905 TCAGGGGTAGTAGACATTCAcctgtagtcccagccactgggagatttgagtccaagagttcaagactgtagtatgcAATgatcgagcctgtgaatagtcactgcactccagcctggacaacatagcaagac-cccatctctt-------------aaaaaaaaaGAGTCTAT------AAGACAAAGGTCCTCATAAATCAAGAGAAGCCAAGACAGTCACTGTGCCTGAAGAA i macFas5.chr6 C 0 C 0 s papAnu2.JH683014 6671 214 + 14956 CCAGGTTTAGTAcacactcacctgtagtcccagccactgggagatttgagtccaagagttcaagactgtaGTATGCAATGATCGagcctgtgaatagtcactgcactccagcctggacaacatagcaagac-cccatctctt-------------aaaaaaaaagagtctat------aaGACAAAGGTCCTCATAAATCAAGAGAAACCAAGACAGTCACTGTGCCTGAAGAA i papAnu2.JH683014 C 0 C 0 s chlSab2.chr4 46899029 214 + 91010382 ccaggtgtagtagacactcacctgtagtcccagccactgggagatttgagtccaggagttcaagactgtagtATGCAATgatcgaggctgtgaatagtcactgcactccagcctggacaacatagcaagac-cccatctctt-------------aaaaaaaaaGAGTCTAT------AAGACAAAAGTCCTCATAAATCAAGAGAAGCCAAGACAGTCACTGTGCCTGAAGAA i chlSab2.chr4 C 0 C 0 s calJac3.chr2 47246911 232 - 204313951 ccaggtgtggtaggcatgcacctgtagtcccagccactgggagacttgagttcaggagttcaagactgtagtgtgcaatgattgagcctgtgaatagccactgcactccagcctagacaacatagcaata--cccatccctttaaaaaataaaaaaGAGAGAGAGAGTCTATAAGACAAAGACAAAGGTCCTCATAAATTAAGAGAAGCCAAGGCAGTCACGGTGCCTGCAGAG i calJac3.chr2 C 0 C 0 e canFam3.chr4 23962563 15 - 88276631 I a score=2884.000000 s hg38.chr1_KI270765v1_alt 85785 6 + 185285 TATTT-T s panTro4.chr5 117706808 6 - 182651097 TATTT-T i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48781134 7 + 183952662 TATTTAA i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54699788 6 + 109391073 TATTT-T i nomLeu3.chr12 C 0 C 0 s calJac3.chr2 47247143 6 - 204313951 tattt-t i calJac3.chr2 C 0 C 0 e chlSab2.chr4 46899243 0 + 91010382 C e rheMac3.chr6 48556619 0 + 180491593 C e canFam3.chr4 23962563 15 - 88276631 I e papAnu2.JH683014 6885 0 + 14956 C e macFas5.chr6 49879912 0 + 181584905 C a score=185062.000000 s hg38.chr1_KI270765v1_alt 85791 365 + 185285 AAtttttttttattatactttaagttctagggtacatgtgaacaacgtgcaggtttgttacatatgtatacatgtgccatgttggtgtgctgcacccattaactcatcttttacattaggtatatctcctaatgctatccctcccccagccccccaccacagagcaggccccagtgtgtgatgttccctttcctgtatccatgtgttctcattgttcaattcccacctgtgagtgagaacatgcggtgtttggttttttgtccttgtgatagtttgctgagaatgatggtttccagcttcatccatgtccctacaaaggacatgaactcatccttttttatggctgcatagtattccatggtgta s panTro4.chr5 117706814 365 - 182651097 AAATTGtttttatcatactttaagttctagggtacatgtgcacaatgtgcaggtttgttacatattcatacatgtgccatgttggtgtgctgcacccattaactcatcatttacattaggtatatctcctaatgctatccctcccccagcctcccaccccacaacaggccccagtgtgtgatgttccctttcctgtgcccatgtgttctcattgttcaattcccacctatgagtgagaacatgcggtgtttggttttttgtccttgcaatagtttgctgagaatgatggtttccagcttcatccatgtccctacaaaggacatgaactcatcattttttatggctgcatggtattccatgttgta i panTro4.chr5 C 0 I 139 s ponAbe2.chr5 48781141 365 + 183952662 AAtttttttttagtatactttaagttctagggtacatgtgcacaacgtgcaggtttgttacatatatatacatgtgccatgttggtgtgctgcacccagtaactcatcattgacattaggtatatctcctaatgctatccctcccccagcctcccactccacaacaggccccagtgtgtgatgttccccttcctgtgcctatgtgttctcattgttcaattcccacctatgagtgagaacatgtggtgcttggttttttgtccttgcgatagtttgctgagaaggatggtttccagtttcatctacgtccctacaaaggacatgaactcatcattttttatggctgcatagtattccatggtata i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54699794 365 + 109391073 AAAttttttttattatactttaagttctagggtacatgtgcacaatgtgcaggtttgttacctatgtatacatgtgccatgttggtgtgctgcacccattaactcatcatttacattaggtatatctcctaatgctatccctcccccagccccccatcccacaacaggccccacagtgtgatattccccttcctgtgtccatgtgttctcattgttcaattcccactgatgagcgagaacatgcggtgtttggttttttgtccttgtgataatttgctgagaatgatggtttccagtttcatccatgtcactacaaaggacacgaactcatcattttttatggctgcatagtattccatggtgta i nomLeu3.chr12 C 0 C 0 e calJac3.chr2 47247149 0 - 204313951 C e chlSab2.chr4 46899243 0 + 91010382 C e rheMac3.chr6 48556619 0 + 180491593 C e canFam3.chr4 23962563 15 - 88276631 I e papAnu2.JH683014 6885 0 + 14956 C e macFas5.chr6 49879912 0 + 181584905 C a score=686477.000000 s hg38.chr1_KI270765v1_alt 86156 1377 + 185285 tatgtgccacattttcttaatacagtctatcattgttggacatttgggttggttccaagtctttgctattgtgaatagtgccgcaataaacatacgtgtgcgtgtgtctttatagcagcatgatttataatcctttgggtatatacccagtaatgggatggctgggtcaaatggtatttctagttctagttccttgaggaatcaccacactgtcttccacaatgatttaaccagtttacagtcccaccaacagtgtgaaagtgttcctatttctccacatcctctccagcacctgttgtttcctgactttttaatgatcgccattctaac------------------------------------------------------------------------------------------tggtgtgagatggtatctcattgtggttttgatttgcatttctctgatggccaatgatgatgagcattttttcatgtgtctgttggctgcataaatgtcttcttttgagaagtgtctgttcatatacttcgcccacttgttgatggggttgtttg-ttttttcttgtaaatttgtttgagttcattgtagattctggatattagccctttgtcagatgagtagattgcaaaaatgttctcccattctgtaggctgcctgttcactctgatggtagtttcttttgctgtgtaggagccctttagtttaattagatcccatttgtcaattttggcttttattgccattgctttcagtgttttagacatgaagtccttgcc-atgcctgtgtcctgaatggtattgcctaggttttcttctagggtttttatggttttaggtctaacatgtaagtctttaatccatcttgaattaatttttgtataaggtgtaaggaagggacccagtttcagctttctacatatggctagccagttttcccagcaccatttattaaacagggaatcctttccccatttcttgcttttgtcaggtttgtcaaagatcagatggttgtagatgtgtggtgttatttctgagggctctgttctgttccattggtctatatctctgttttggtacaagtaccatgctgttttggttattgtagcctcatagtctagtttgaagtcaggtagcgtgatgcctccagctttgttctttttgcttaggattgacttggcaatgcggactctttttt-gtttccgtgtgaactttaaagtagtttttttccaattctgtaaagaaagtcattggtagcttgatggggatggcattgaatctataaattaccttgggcagtatggccattttcacgatattgattcttcctatccatgagcatggaatgttcttccatttgtttgtgtcctcttttatttccttgagcagtggtttgtagttctccttgaataggtccttcacatcccttgtaagttgggttcctaggtat s panTro4.chr5 117707318 1370 - 182651097 tatgtgccacattttcttaatccagtctatcattgatggacatttgggttggttccaagtctttgctattgtgaatagtgctgcaataaacatacgtgtgcatgtgtctttatagcagcatgatgtataatcctttgggtatatacccagtaatgggatgtctaggtcaaatggtatttctagttctagatccttgaggaatcgccacactatcttccacaatggttgaactagtttacagtcccaccaacagtgtaaaagtgttcctatttctccacatcctctccagcacctgttgtttcctgactttttaatgatcaccatcctaac------------------------------------------------------------------------------------------tggtgtgagatggtatctcattgtggttttgatttgcatttctctgatggccagtgatgatgagcattttttcatgtgttttttggctgcacaaatgtcttcttttgacaagtgtctgttcatatccttcacccacttg---atggggttgtttgcttttttcttgtaaatttgttggagttctttgtagattccggatattagccctttgtcggatgagtagattgcaaacattttctcccattctgtaggttgcatgttcactctgatggtagtttcttttgctgtgcagaagctctttagtttaattagatcccatttgtcaattttggctttagttgccattgcttttggtgttttagatatgaagtccttgcccatgcctatgtcctgaatggtattgcctaggttttcttctagggtttttatggttttaggtctaacattcaagtctttaatccatcttgaatgaatttttgtataaggtgtaag------atccagtttcagctttctacatatggctagccagttttcccagcaccatttattaaatagggaatcctttccccatttcttgtttttgtcaggtttgtcaaagatcagatggttgtagatgtgtggtattatttctgaggtctctgttctgttccattgatctatatctctgttttggtaccagtaccatgctgttttggttactgtagacttgtactatagtttgaagtcaggtagcatgatgcctccagctttgttctttttgcttaggattgacttggcagtgcaggctctttttttggttccatatgaactttaaagtagtttttt-ctaattctgtgaagaaagtcattggtagcttcatgggcatggcattgaatctataaattaccttgggcagtatggccattttcatgatattgattcttcctatccatgagcatggaatgttcttccatttgtttgtgtcctctttcatttccttgagcagtggtttgtatttctccttgaaaaggtccttcacatcccttgtaagttggattcctaggtat i panTro4.chr5 I 139 C 0 s ponAbe2.chr5 48781506 1465 + 183952662 tatgggtcacattttcttaaaccagtctatcgttgttggacatttgggttggttccaagtctttgctattgtgaatagtgccacaataaacatacgtgtgcatgtgtctttatagaagcatgatttataatcctttgggtatatacccagtaatgggatggctaggtcaaatggtatttctagttctagatccttgaggaatcgccacactgtcttccacaatggttgaaccagtttacagtctcaccaacagtgtaaaagtgttcctgtttctccacatcttctccagcacctgttgtttactgactttttaatgatcaccattctaactggtgtgagacagtatctcattgtggttttgattccacatcttctccagcacctgttgtttactgactttttaatgatcaccattctaagtggtgtgagatggtatctcattgtggttttgatttgtatttctctgatggccagtgatgatgagcattttttcatgtgtctgttggctgcataaatgtcttcttttaggaagtgtctgttcatatcattcgcccacttg---atggggttgtttgcttttttcttgtaaatttgttggagttctttgtagattctggatattagccctttgtcatatgagtagattgcaaacactttctcccattctatagcctgcctgttcactctgatggtagtttcttttgctgtgaagaagctctttagtttaattaaatcccgtttgtcaattttggcttttgctaccattgcttttggtgttttagatatgaagtccttgcccatgcctatgtcctgaatggtattgcctgggttttcctctagggtttttatggttttaggtctaaaatttaagtctttaatccatcttgaattaatttttgtataaggtgtaagaaagggatccagtttcagctttctaagtatggctagccagttttcccagcaccatttattaaatagggaatcgtttccccattgcttgtttttgtcaggtttgtcaaagatcagatggttgtagatgtgtggtattatttctgagggctctgttctgttccattggtctatatctctgttttggtaccaataccatgctgttttggttactgtagccttgtagtatagtttgaagtcaggtagcatgatgcctccagctttgttcttttggcttaggattgacttggtgatgcgggctctttttt-ggttccatatgaactttaaagtagtttttt-ccaattctgtgaagaaagtcattggtagcttgatggggatggcattgaatctataaattaccttgggcagtatggccattttcacgatattgattcttcctatccatgagcatggaatgttcttccatttgtttgtgtcctctttcatttccttgagcagtggtttgtagttctccttgaagaagtccttcaaatcccttgtaagttggattcctaggtat i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54700159 1373 + 109391073 tatgtgccacattttcttaatccagtctatcattgatggacatttcggttggttccaagtcttttctattgtgaatagtgctgcaataagcatacgtgtacatgtgtctttatagcagcatgatttataatcctttggttatatacccagtaatgggatggctgggtcaaatggtatttctagttctagatccctgaggaatcgccacactgacttccacaatggttgaactagtttacagtcccaccaacagtgtaaaagtgttcctatttctccacatcctctccagcacctgttgtttcctgactttttaatgatggccattctaac------------------------------------------------------------------------------------------tggtgtgagatggtatctcattgtggttttgatttgcatttctctgatggccagtgatgatgagcatcttttcatgtgtctgttggctgaataaatgtcttcttttgagaagtgtctgttcatatccttcgcccacttgttgatggggttt-----ttttttcttgtaaatttgtttgagttcattgtagattctggatattagccctttgtcagatgagtaaattgcaaaaattttctcccattctgtaggttgcctgttcactctgatggtagtttcttttgctgtgtagaagctctttagtttaattagatcccatttgtcaattttggcttttgttgccattgcttttggtgttttaaacatgaagtccttgcc-atgcctgtgtcctgaacggtattgcctaggctttcttctagggtttttatggttttaggtctaacatttaagtctttaatccatcttgaattaatttttgtataaggtgtaagaaagggatccagtttcagctttctacatatgtctagccagttttcccagcaccatttattaaatagggaatcctttccccatttcttgtttttgtcaggtttttcaaagatcagatggttgtagatgtgtggtgttatttctgagggctctgttctgttccattggtctatatctctgttttggtaccagtaccatgctgttttggttactgtagccttgtagtctagtttgaagtcaggtagcatgatgcctccagctttgttctttttgcttaggattgacttggtgatgcgggctctttttt-gtttccatacgaacttcaaagtagtttttttccaattctgtaaagaaagtcattggtagcttgatggggatggcattgaatctacaaattaccttgggcagtatggccattttcacgatattgattcttcctatccctgagcatggaatgttcttccatttttttgtgccctcttttatttccttgagcagtggtttatagttctccttgaagaggtcctaagcggcccttgtaagttgggttcctaggtat i nomLeu3.chr12 C 0 C 0 e calJac3.chr2 47247149 0 - 204313951 C e chlSab2.chr4 46899243 0 + 91010382 C e rheMac3.chr6 48556619 0 + 180491593 C e canFam3.chr4 23962563 15 - 88276631 I e papAnu2.JH683014 6885 0 + 14956 C e macFas5.chr6 49879912 0 + 181584905 C a score=15540.000000 s hg38.chr1_KI270765v1_alt 87533 6 + 185285 tATTTC s panTro4.chr5 117708688 6 - 182651097 tATTTC i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48782971 6 + 183952662 tATTTC i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54701532 6 + 109391073 tATTTC i nomLeu3.chr12 C 0 C 0 s rheMac3.chr6 48556619 6 + 180491593 TATTTC i rheMac3.chr6 C 0 C 0 s macFas5.chr6 49879912 6 + 181584905 TATTTC i macFas5.chr6 C 0 C 0 s papAnu2.JH683014 6885 6 + 14956 TATTTC i papAnu2.JH683014 C 0 C 0 s chlSab2.chr4 46899243 6 + 91010382 TATTTC i chlSab2.chr4 C 0 C 0 e calJac3.chr2 47247149 0 - 204313951 C e canFam3.chr4 23962563 15 - 88276631 I a score=1543108.000000 s hg38.chr1_KI270765v1_alt 87539 514 + 185285 AAATATTATTGTAAAACAATGAGATATTGAAACATACATTGGAGCAAACTCTTCTTCATTTTTAAATCCTTTCAGCACAGAGACAATCAACTGAC--TGTCTGGGTACTACCTGACCACTATTGGAGTCTCTTTCATCTGCCTGAGTCTGTGCAACAATATGAAATTATAATTTTACTATGCACCTAAACGTTCCTCAATATATTGAATTCTTACAGAATTTGAAGAGTCAAATTTTGTAAATCCAGTTACCTTTTTCCACTACTCTAGGCCTCATATACTATCTGGCCTAAGGGTTAAAGGTCCACAATTGAATAAGCCAAACTTGTTAATTTGAAGGTAAAGCATGTCAAGAAATCTGGCCTTAATGTCCAATGAACTTATGTCATATTAAGTAGCTGGATAGAAACATGCATTCCAAAGTGGATACTGTTTATCAGGCTCAGTGCTCTATTCTTGATGGTAAATCCCAGAATAGGGTGGATGCTTTAATTTTGTATTAAATAGTATTAGGTGT s panTro4.chr5 117708694 511 - 182651097 AAATATTATTTTAAAACAATGAGATATTGAAACATACATTGGAGCAAA---TTCTTCACTTTTAAATCCTTTCAGCACAGAGATGATCAGCTGAC--TGTCTGGGTGCTACCTGAGCACTATTGGAGTCTCTTTCATCTGCCTGAGTCTGTGCAACAATATGAAATTATAATTTTACTATGCACCTAAAGTTTCCTCAATATATTGAATTATTACAGAATTTTATGAGTCAAATTTTGTAAATTCAGTTACATTTTTCCACTACTCTAGGTCTCATATACTATCTGGCCTAAGGGTTAAAGGTCCACAATTGAATAAGCCAAACTTGTTAATTTGAGGGTAAAGCATGTCAAGAAATCTGGCCTTAATGTCCAATGAACTTATATCATATTAAGTAGCTGGATAGAAACATGCATTCCAAAGTGGATACTATTTATCAAGCTCAGTGCTCTATTCTTGACAGTAAATCCCATGATAGGGTGGATGCTTTAATTGTGTAGTAAATAGTATTAGGTGT i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48782977 513 + 183952662 AAATATTATTGTAAAACAATGAGATATTGAAACATACATTGGAGCAAACTCTTCTTCACTCTTAAATCCTTTCAGCACAGAGATGATCAACTGAC--TGTCTGGGTGCTACCTGAGCACTATTGGAGTCTCTTTCATCTGCCTGAGTCTGTGTAACAATATGAAATTATAATTTTACCATGCACCTAAACTTTCCTCAATATATTGAATTATTACAGAATTTGATGAGTCAAATTTTGTAAATTCAGTTACCTTTTTCCACTACTCTAGGCCTCATATACTATCTGGCCTAAGGGTTAAAGGTCCACAATTGAATAAGCCAAACTTGTTAATTTGAGGGTAAAGCATGTCAAGAAATCTGGCCTTAATGTCC-ATGAGCTTATGTCATATTAAGTAGCTGGATAGAAACATGCATTCCAAAGTGGATACTGTTTATCAGGCTCCATGCTCTATTCTTGACAGTAAATCCCAGGATAGGGTGGATACTTTAATTGTGTATTAAATAGTATTAGGTGT i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54701538 514 + 109391073 AAATATTATTGTAAAACAATGAGATATTGAATCGTACATTGGAGCAAACTCTTCTTCCCTCTTAAATCCTTTCAGCACAGAGACAGTCAACTGAC--TGTCTGGGTGCTACCTGACCATTATTGGAGTCTCTTTCATCTGCCTGAGTCTGTGCAACAATATGAAATTATAATTTTACTATGCACCTAAGCTTTCCTCAATATATTGAATTATTACAGAATTTGATGCGTCAAATTTTGTAAATCCAGTTACCTTTTTCCACTACTCTGGGCCTCATATACTACCTGGCCTAAGGGTTAAAGGTCCACCATTGAATAAGCCAAACTTGTTAATTTGGGGGTAAAGCATGTCAAGAAATCTGGCCTTAATGTCCAATGAACTTATGTCATATTAAGTAGCTGGATAGAAACATGCATTCCAAAGTGGATACTATTTATCAGGCTCAGTGCTCTATTCTTGACAGTAAATCTCAGAATAGGGTGGATGCTTTAATTTTGTATTAAATAGTATTAGGTGT i nomLeu3.chr12 C 0 C 0 s rheMac3.chr6 48556625 515 + 180491593 AAGTATTATTGTAAAACAATGAGATATTGAA-CATACATTGGAGCAAACTCTTCTTCACTCTTAAATCCTTTCAGCACAGAGACCATCAACTGACTGTGTCTGGGTGCTACCTGACCACTACTGGAGTCTCTTTCATTTGCCTGAGTCTGTGCAACAATATGAAATTATAATTTTACTATGCACCTAAACTTTCCTCAATATATTGAATTATTACAGAATTTGATGAGTCAAATTTTGTAAATTCAGTTACCTTTTTCCACTACTCTAGGCCTCATATACTATCTGGTCTCAGGGTTAAAGGTCCATAACTGAATAAGCCAAACTTCTCAATTTGAGGATAAAGCATGTTAATAAATCTGGCCTTAATGTCAAATGAACTTATGTCATATTAAGTAGCTGGATAGAAACATGCATTCCAAAGTGGATACTGTTTATCAGGCTCAGTGCTCTATTCTTGACAGTAAATCCCAGAATAGGGTGGATGCTTTAATTGTGTATTAAATAGTATTAGGTGT i rheMac3.chr6 C 0 C 0 s macFas5.chr6 49879918 515 + 181584905 AAGTATTATTGTAAAACAATGAGATATTGAA-CATACATTGGAGCAAACTCTTCTTCACTCTTAAATCCTTTCAGCACAGAGACCATCAACTGACTGTGTCTGGGTGCTACCTGACCACTACTGGAGTCTCTTTCATTTGCCTGAGTCTGTGCAACAATATGAAATTATAATTTTACTATGCACCTAAACTTTCCTCAATATATTGAATTATTACAGAATTTGATGAGTCAAATTTTGTAAATTCAGTTACCTTTTTCCACTACTCTAGGCCTCATATACTATCTGGTCTCAGGGTTAAAGGTCCATAACTGAATAAGCCAAACTTCTCAATTTGAGGATAAAGCATGTTAATAAATCTGGCCTTAATGTCAAATGAACTTATGTCATATTAAGTAGCTGGATAGAAACATGCATTCCAAAGTGGATACTGTTTATCAGGCTCAGTGCTCTATTCTTGACAGTAAATCCCAGAATAGGGTGGATGCTTTAATTGTGTATTAAATAGTATTAGGTGT i macFas5.chr6 C 0 C 0 s papAnu2.JH683014 6891 515 + 14956 AAGTATTATTGTAAAACAATGAGATATTGAA-CATACATTGGAGCAAACTCTTCTTCACTCTTAAATCCTTTCAGCACAGAGACCATCAACTGACTGTGTCTGGGTGCTACCTGACCACTACTGGAGTCTCTTTCATCTGCCTGAGTCTGTGCAACaatatgaaattataattttactaTGCACCTAAACTTTCCTCAATATATTGAATTATTACAGAATTTGATGAGTCAAATTTTGTAAATTCAGTTACCTTTTTCCACTACTCTAGGCCTTATATACTATCTGGTCTCAGGGTTAAAGGTCCATAACTGAATAAGCCAAACTTCTTAATTTGAGGATAAAGCATGTTAATAAATCTGGCCTTAATGTCAAATGAACTTATGTCATATTAAGTAGCTGGATAGAAACATGCATTCCAAAGTGGATACTGTTTATCAGGCTCAGTGCTCTATTCTTGACAGTAAATCCCAGAATAGGGTGGATGCTTTAATTGTGTATTAAATAGTATTAAGTGT i papAnu2.JH683014 C 0 C 0 s chlSab2.chr4 46899249 515 + 91010382 AAGTATTATTGTAAAACAATGAGATATTGAA-CATACATTGGAGCAAACTCTTCTTCACTCTTAAATCCTTTCAGCACAGAGACCATCAACTGACAGTGTCTGGGTGCTGCCTGACCACTACTGGAGTCTCTTTCATCTGCCTGAGTCTGTACAACAATATGAAATTATAATTTTACTATGCACCTAAACTTTCCTCAATATATTGAATTATAACAGAATTTGATGAGTCAAATTTTGTAAATTCAGTTACCTTTTTCCACTACTCTAGGCCTCATATACTATCTGGTCTCAGGGTTAACGGTCCATAATTGAATAAGCCAAACTTCTTAATTTGAGGGTAAAGCATGTTAATAAATCTGGCCTTAATGTCAAATGAACTTATGTCATATTAAGTAGCTGGATAGAAACATGCATTCCAAAGTGGATACTGTTTATCAGGCTCAGTGCTCTATTCTTGACAGTAAATCCCAGAATAGGGTGGATGTTTTAATTGTGTATTAAATAGTATTAGGTGT i chlSab2.chr4 C 0 C 0 s calJac3.chr2 47247149 513 - 204313951 aaatattatagtaaaataataatatattaaaaCATACATTGGAGCAAAC---TCTTCACTCTTAAATCCTTTCGGCATAGAGATAATCAATTAACTATGTCTGGGTGCTACCTGACCACTATTGGAGTCTGTTTCATCTACCCAAATCTGTGCAACAATATGAAATTATAATTTTACTATGCACCTAAACTTTCCTCAGTATACAGAATCATCACAGAATTTAATGAGTCAAATTTTGCAAATTCAGCTACCTTCTTCCACTACTCTAGGACTCATATAATATGTAGCCTAAGGGTTAAAAGTTCACAATTGAATAAGCTAAACTTGTTAATTTGGGGATAAAGCACGTCAAGAAACCTGGCCTTAATGTCCAATGAACTCACATCATATTAAGTAGCTGAATAGAAACATGCATTCCAAAGTGGATACTGTTTATCAAACTCAGTGTTCTATTCTTGACGGTAAATCTCAGAATAGGGTGGATGCTTTAATTGTGTACTAAATAGTATTTGGAGT i calJac3.chr2 C 0 C 0 e canFam3.chr4 23962563 15 - 88276631 I a score=1860907.000000 s hg38.chr1_KI270765v1_alt 88053 569 + 185285 AATATCAAAACCACTAAGGGAACACTAATGATGAGAATaggaacactagctgtggagctggtaactttctatagaaatcctatctctttcaattgcctgttta-----gtgggcaagt--------------gtttcagttcctataatatctaaattggagaaaatcaccccacctacttcttcaggtgttatgataattatgagggataacatctttttaagtgtttaacacaattcctcacacatagaaagcaataataaacattggctagcattGTAAGGATGGATTATTGT------CT--------TCCAATGTGTTTTCATACATTTTCTTTCTGGGATCTTGAGTGAAACATGTGGATCTAGAAC-AAGAACAAAATGATGTTACCTTGATGATCTCTATGTAGGGTCACACTCAAGGCATCTTAAAATATTTTGCTGGC-CAACAAAAGACACCTCCTGTTCTAATTGGGCATTGTCCTTTTCTTTAAACTATGCAGACAAACAATATTATAAAGTGAGAACATCCGCAT-AAAAAACCTAA------------------------------------------ACATAAATCTTAATAGTGAGTTCATGAAAATTCTTACTGATGAAATGGCAATGT s panTro4.chr5 117709205 567 - 182651097 AATATCAAAACCACTAAGGGAACACTGATGATgtgaataggaacactacctgtggatctgggaattttctatagaaatcctatctcttttaattgcctgttta-----gtgggcaagt-------------tgtttcagttcctatgatatctaaattggagaaaatcaccccacctacttcttcaggtgttatgataattatgagtgataacatctttttaagtgcttaacacaattcctcacacatagaaagcaataataaacattggctagcattGTAAGGATGT-TTATTGT------CT--------TCTAATGTGTTTTCATACATTTTCTCTCTGGGATCTTGAGTGAAACATGTGGATCTAGAAC-AAGAACAAAATGATATTACCTTAATGATCTTTATGTAT--TTACACTCAAGGTGTCTTAAAATATTTTGCTGGC-CAACAAAAGACACCTCCTATTCTAACTGGGCATTGTCCTTTTCTTTAAACTATGCAGACAAACAATATTATAAAGTGAGAACATCAGCAT-AAAAAACATAA------------------------------------------ACATAAATCTTAATAGTGAGTTCATGAAAATTCTTACTGACGAAATTGCAGtgt i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48783490 564 + 183952662 AATATCAAACCCACTAAGGGAACACTGATGATgtgaataagaacactagctgtggatctgggaattttctatagaaatcctatctctttcaattgcctgttta-----gtgggcaagt-------------tgtttcagttcctataatatctaaattggagaaaatcaccccacctacttcttcaggtgttatgataattatgagggataacatctttttaagtgcttaacagaattcctcacacatagaaagcaataataaacattggctagcattGTAAGGATGT-TTATTGT------CT--------TCTAATGTGTTTTCATACATTTTCTCTCTGGGATCTTGAGTGAAACA--TGGATCTAGAAC-AAGAAC-AAATGATGTTACCTTAATGGTCTCTATGTAT--TTACACTCAAGGTGTCTTAAAACATTTTGCTGGC-CAACAAAAGACAACTCTTGTTCTAATTGGGCATTGTCCTTTTCTTTAAACTATGCAGACAAACAATATCATAAAGTGAGAACATCAGCAT-AAAAAACATAA------------------------------------------ACATAAATCTTAATAGTGAGTTCATGAATATTCTTACTGACGAAATGGCAAtgt i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54702052 564 + 109391073 AATATCAAAACCACTAAGGGAACACTAATGATgtgaataggaacattagctgtggagctgggaattttatatagaaatcctatctctttcaattgcctgttta-----gtgggcaagt--------------gtttaagttcctattatatctaaattggagaaaatcaccccacctacttcttcaggtgtt---ataattatgagggataacatctttttaagtgcttaacacaattcctcacacatagaaagcaataataaacatttgctAGCATTGTAAGGATGAATTATTGT------CT--------TCTAATGTGTTTTCATACATTTTCTCCCTGGGATCTTGAGTGAAACATGTGGATCTAGAAC-AAGAACAAAATGATGTTACCTTAATGATCTCTACGTAT--TTACACTCAAGGTGTCTTAAAATATTTTACTGGC-CAACAAAAGACACCTCCTGTTCTAATTGGGCATTGTCCTTTTCTTTAAACTATGCAGACAAACAATATTATAAAGTGAGaacatcagcat-aaaaaacataa------------------------------------------acataaaTCTTAATAGTGAGTTCATGAAAATTCTTACTGATGAAATGGCAATGT i nomLeu3.chr12 C 0 C 0 s rheMac3.chr6 48557140 565 + 180491593 AATATCGAAACCACTAAGGAAACACTATTGATgtgaataggaacactagctgtggagctgggaattttctatataaatgctatgtctttcactcacctgttta-----gtgggcaagt-------------tgtttcagttcctataatatctaaattggagaaaatcaccccacctacttcttcaggtgttacaataattatgagggataacatctttttaagtgcttaacacaattcctcacacgtagaaatcaataataaacattggctagcattGTAAGGAGGT-TTATTGT------CT--------TCTAATGTGTTTTCACACATTTTCTCTCTGGGATCTTGAGTGAAACG--TGGATCTAGAAC-AAGAACAAAATGATGTTACCTTAATGATCTCTATGTCT--TTATACTCAAGGTGTCTTAAAATATTTTGCTGGC-CAACAAAAGACACCTCCTGTTCTAATTGGGCATTGTCCATTTCTTTAAACTATGCAGACAAACAATATTATAAAGTGAGAACATCAGCAT-AAAAAACATAA------------------------------------------ACATAAATCTTAAAAGTGAGTTCATGAAAATTCTTACTGATGAAATGGCAGtgt i rheMac3.chr6 C 0 C 0 s macFas5.chr6 49880433 565 + 181584905 AATATCGAAACCACTAAGGAAACACTATTGATgtgaataggaacactagctgtggagctgggaattttctatataaatgctatgtctttcactcacctgttta-----gtgggcaagt-------------tgtttcagttcctataatatctaaattggagaaaatcaccccacctacttcttcaggtgttacaataattatgagggataacatctttttaagtgcttaacacaattcctcacacgtagaaagcaataataaacattggctagcattGTAAGGAGGT-TTATTGT------CT--------TCTAATGTGTTTTCACACATTTTCTCTCTGGGATTTTGAGTGAAACG--TGGATCTAGAAC-AAGAACAAAATGATGTTACCTTAATGATCTCTATGTCT--TTATACTCAAGGTGTCTTAAAATATTTTGCTGGC-CAACAAAAGACACCTCCTGTTCTAATTGGGCATTGTCCATTTCTTTAAACTATGCAGACAAACAATATTATAAAGTGAGaacatcagcat-aaaaaacataa------------------------------------------acataaatcttaaaAGTGAGTTCATGAAAATTCTTACTGATGAAATGGCAGtgt i macFas5.chr6 C 0 C 0 s papAnu2.JH683014 7406 565 + 14956 AATATCGAAACCACTAAGGAAACACTATTGATGTGAATAGGAACACTAGCTGTGGAGCTGGGAATTTTCTATATAAATGCTATGTCTTTCACTCACCTGTTTA-----GTGGGCAAGT-------------TGTTTCAGTTCCTATAATATCTAAACTGGAGAAAATCACCCCACCTACTTCTTCAAGTGTTACAATAATTATGAGGGATAACATCTTTTTAAGTGCTTAACACAATTCCTCACACGTAGAAAGCAATAATAAACATTGGCTAGCATTGTAAGGAGGT-TTATTGT------CT--------TCTAATGTGTTTTCACACATTTTCTCTCTGGGATCTTGAGTGAAACA--TGGATCTAGAAC-AAGAACAAAATGATGTTACCTTAATGATCTCTATGTCT--TTATACTCAAggtgtcttaaaatattttgctggC-CAACAAAAGACACCTCCTGTTCTAATTGGGCATTGTCCATTTATTTAAACTATGCAGACAAACAATATTATAAAGTGAGAACATCAGcat-aaaaaacataa------------------------------------------acataaatctTAAAAGTGAGTTCATGAAAATTCTTACTGATGAAATGGCAGTGT i papAnu2.JH683014 C 0 C 0 s chlSab2.chr4 46899764 565 + 91010382 AATATCGAAACCACTAAGGAAACACTATTGATGTGAATAGGAACACCAGCTGTGGAGCTGGGAATTTTCTATATAAATGCTATGTCTTTCACTCACCTGTTTA-----GTGAGCAAGT-------------TGTTTCAGTTCCTATAATATCTAAATTGGAGAAAATCACCCCACCTTCTTCTTCAGGTGTTATAATAATTATGAGGGATAACATCTTTTTAAGTGCTTAACACAATTCCTCACACGTAGAAAGCAATAGTAAACATTGGCTAGCATTGTAAGGAGGT-TTATTGT------CT--------TCTAATGTGTTTTCACACATTTTCTCTCTGGGATCTTGAGTGAAACG--TGGATCTAGAAC-AAGAACAAAATGATGTTACTTTAATGATCTCTATGTCT--TTATACTCAAGGTGTCTTAAAATATTTTGCTGGC-CAACAAAAGACACCTCCTGTTCTAATTGGGCATTGTCCTTTTCTTTAAACTATGCAGACAAACAATATTATAAAGTGAGaacatcagcat-aaaaaacataa------------------------------------------acataaatcttaaaAGTGAGTTCATGAAAATTCTTACTGATGAAATGGCAGtgt i chlSab2.chr4 C 0 C 0 s calJac3.chr2 47247662 552 - 204313951 AATATCATAGTCACTAAGGGAACACTAATGATGTAAATAGGAACACT---------------------------Aaagcctatctcttttacttacttgttta-----gtgggcaagt-------------tgtttcagttcctataatatctaaattggtcaaagtcaccccacctacttcttcaggtgttttgataataa--agggataacatctgtttaagtgcttaacacaatt-ctctcacatagaaagcaataataaacattggctaAGATTTCAAGGATGC-TTATTGTAAGAAACTGTAGGAAATAAAATATGTTTTTATACATTTTCTCTCTGGGATCTGGAGTGAAACATGTGGATCTAGAAC-AAGAACAGAATGATGTTACCTTAATGACCTCTATATAT--TTGCACTCAAGATGTCTTAAAACATTTTGCTGGC-CAACAAAAGACACCTCCTGTTCTAATTGGGGGTTGTCCTTATCTTTAAACTATGCAGACAAACAATATTATAAAGTGAGAACATCAGCATAAAAAAACATAA------------------------------------------ACATAAATCTTAATAGTAAGTTTATGAAAATTCTTACTGATAATATGACAAtgt i calJac3.chr2 C 0 C 0 s canFam3.chr4 23962578 607 - 88276631 AATATCAGAATTCCCAagcgaacac----------------agcactagctgtggagctgggaaattcttatataaatcctagctctttcacctactagtttgtaaatgtgggcaagttgcttaacttttctgttttagtccctatgata-cttagttggactaaatcatcatccttatttcttgaggtattatgataatgtcaaggaacaacctctgttgaagtggttaacacagatcctggcactcagagagcaataataaacattggctAGGATTATGAGGATGC-TTACCAT------CT--------TCTGATATGCTTTCACTGCTTTTCTCCCTAGGATCTTGAGTGAAACG--TGGTTATAGAACAAAGCACAGAATGATGTCAATCTGATGACCTCAATGCAT--TCACATTTGAAATACCTTAAAATATTTTGCTGGCAAAACAAAAGATACCTCCTATCCTAA-GAGGCATGATCC-TTTCTTTAAGCTGTATAGGCAAACAATATTATAAAGTGAAAACAGCAGCAC-CAAAAACAAAAATAAAAACAACTAAATGAAACTAGACGCAAGAAAACACATCCACATAAGCCTTCCTAGTGAGTTCATGAA-ATTCCTAATGGTGAGATGGTAATGT i canFam3.chr4 I 15 I 354 a score=1190241.000000 s hg38.chr1_KI270765v1_alt 88622 394 + 185285 CACAGActgactgtttatgtccccccaaatttgtatattgaaatcctaacccccaagctactcgtgttaggagatagagccttggggaggtgattaggccatgaggacaagattctcatgaatggaatttgtgcccttataaaagagatcccagagagctcattggccccttccaaagtatggggatacagcaggaagttgccatctatgagccagaagggtgaacctcaccccagatgctgaatctgccttgatattggacttcccagcctgcacaactgtaag----aaatttctgttgtttataagttactcagcttgtggta-ttttgttacagcagcctacacagactaagacaAGTAGCATTTTGAGGATTAAAATTTCTTCATAAATGAATA s panTro4.chr5 117709772 394 - 182651097 cacagactgaatgtttatgtccccccgaatttgtatattgaaatcctaacccccagggtattcatgttaggaggtagagccttggggaggtgattaggtcatgaggacaagattctcatgaatgggatttgtgcccttataaaagagatcccagagagctcattggccccttccaaagtatggggatatagcaggaagttgccatctatgagccagaagggtggacctcacccaagatgatgaatgtgccttgatattggacttcccagcctgcataactgtaag----aaatttctgttgtttataagttactcagcttatggta-ttttgttacagcagcctacacagactaagacGAGTAGCATTTTGAGGATTGAAATTTCTTCATAAATGAATA i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48784054 394 + 183952662 cacagactgaatgtttatgttcccccaaatctgtatatggaaatcctaacccccagggtactcatgttaggacgtagagccttggggaggtgattaggtcatgaggacaagattctcatgaatgggatttgtgcccttataaaagagatcccagagagctcattggccccttccaaagtatggggatatagcaggaagttgccatctatgagccagaagggtggacctcaccccagacgatgaatctgccttgatattggatttcccagcctgcacaactgtaat----aaatttctgttgtttataagttactcagcttatggta-ttttgttacagcaggctacacagactaagacGAGTAGCATTTTGAGGATTGAAATTTCTTCATAAATGAATA i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54702616 394 + 109391073 CACAGActgaatgtttatgtccccccaaatttgtatattgaaatcctaacccccaaggtactcatgttaggaggtagagccttggggaggtgattaggtcatgaggacaagattctcatgaatcagatttgtgcccttataaaagagatcccagagagttcactggccccttccaaagtatgagtatatagcaggaagttgccatctatgagccagaagggtggaccccatcccagatgctgaatctgccttgatattgaacttcctagcctgaacaaccgtaag----aaatttctgttgtttataagttactcagcttatggta-ttttgttacagcagcctacacagactaagaTGAGTAGCATTTTGAGGATTGAAATTTCTTCATAAATGAATA i nomLeu3.chr12 C 0 C 0 s rheMac3.chr6 48557705 393 + 180491593 cacaggctgaatgtttatgt-cccccaaatttgtatattgaaattctaacccccagggtactcgtgttaggaagtagagtcttggggaggtgattaggtgatgaggacaaaattctcatgaataggatttgtgccctaataaaagagatcccagagagctcattggccccttccaaagtatggggatatagcaggaagttgccttctatgagccagaagggtggacctcaccccagatgctgaatctgccttgatattggacttcccagcctgcataactataag----aaatttctgttgtttataagttactcagcttacggta-ttttgttacagcagcctacacagactaagaTGAGTAGCATTTCGAGTATTGAAATTTCTTCATAAATGAATA i rheMac3.chr6 C 0 C 0 s macFas5.chr6 49880998 393 + 181584905 cacaggctgaatgtttatgt-cccccaaatttgtatattgaaattctaacccccagggtactcgtgttaggaagtagagtcttggggaggtgattaggtgatgaggacaaaattctcatgaataggatttgtgccctaataaaagagatcccagagagctcattggccccttccaaagtatggggatatagcaggaagttggcttctatgagccagaagggtggacctcaccccagatgctgaatctgccttgatattggacttcccagcctgcataactataag----aaatttctgttgtttataagttactcagcttatggta-ttttgttacagcagcctacacagactaagaTGAGTAGCATTTCGAGTATTGAAATTTCTTCATAAATGAATA i macFas5.chr6 C 0 I 1 s papAnu2.JH683014 7971 393 + 14956 CACAggctgaatgtttatgt-cccccaaatttgtatattgaaattctaacccccaggGTACTCGTGTTAGGAAGTAGAGTcttggggaggtgattaggtgaTGAGGACAAAATTCTCATGAATAGGATTTGTGCCCTAATAAAAGAGATCCCAGAGAGCTCATTGGCCCCTTCCAAAGTATGGGGATATAGCAGGAAGTTGCCTTCTATGAGCCAGAAGGGTGGACCTCACCCCAGATGCTGAATCtgccttgatattggacttcccagcctgcatAACTAtaag----aaatttctgttgtataTAAGTTACTCAACTTacggta-ttttgttacagcagtctaCACAGACTAAGATGAGTAGCATTTCGAGGATTGAAATTTCTTCATAAATGAATA i papAnu2.JH683014 C 0 C 0 s chlSab2.chr4 46900329 393 + 91010382 cacaggctgaatgtttatgt-cccccaaatttgtatattgaaatcctaacccccagggtactcgtgttaggaggtagagtcttggggaggtgattaggtgatgaggacaaaattctcatgaataggatttgtgccctaataaaagagatcccagagagtttattggccccttccaaagtatgaggatatagcaggaagttgccttctatgagccagaagggtggacctcaccccagatgctgaatctgccttgatattggacttcccagcctgcataactataag----aaatttctgttgtttataagttactcagtttatggta-ttttgttatagcagcctacacagactaagacGAGTAGCATTTCGAGGATTGAAATTTCTTCATAAATGAATA i chlSab2.chr4 C 0 C 0 s calJac3.chr2 47248214 398 - 204313951 cacggactgaatgtttatgttcttctaaatttgcatattgaaattctaatccccagggtattcctgttacgaggtagagcctttgggaggtgattaggtcacgaggacaagattctcatgaatggaatttgtgctcttataaaagagatcccacagagctcatt-gctccttccaaagtatggggatatagcaggaggttgccatctatgagccagaatggtagacctcaccccagatgctgaatctgccttgatattggacttcccagcctccacaactgtaagaaataaatttctgttgcttataagttactcagcttatggcacttttgttagagcagccttcacagactaagTTGAGTAGCATTTTGAGGATTGAAATTTCTTCATAAATGAATA i calJac3.chr2 C 0 C 0 e canFam3.chr4 23963185 354 - 88276631 I a score=325502.000000 s hg38.chr1_KI270765v1_alt 89016 138 + 185285 GAGTATGCCCTGTTAAACCATATTCTCAGCTAACCCCGTTTACTCACTGTTCCTCTTTATTTTAGTTTCACATTTTTGCTATTTATCTCTGTAATTTTATTCATTCTTCACAATTTGCCATTCTTATACTTCGAATCA s panTro4.chr5 117710166 138 - 182651097 CAGTATGCCCTGTTAAACCATATTCTCAGCTAACCCCATTTACTCACTGTTCCTCTTTATTTTAGTTTCACATTTTTGCTATTTATCTCTGTAATTTTATTCATTCTTCACAATTTGCCATTCTTATACTTCGAATCA i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48784448 138 + 183952662 CAGTATGCCCTGTGAAACCATATTCTCAGCTAACCCCATTTACTCACTGTTCCTCTTTATTTTAGTTTCACATTTTTGCTATTTATCTCTGTAGTTTTATTCATTCTTCACAATTTGCCATTCTTATACTTCGAAACA i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54703010 138 + 109391073 GAGTATGCCCTGTTAAACCATATTCTCAGCTAACCCCATTTACTCACTGTTCCTCTTTATTTTAGTTTCACATTTTTGTTATTTATCTCTGTAATTTTATTCATTCTTCACAATTTGCCATTCTTATACTTTGAATCA i nomLeu3.chr12 C 0 C 0 s rheMac3.chr6 48558098 138 + 180491593 GAGTATGCCCTGTTAAACCATATTCTCTGCTAACCCCATTTACTCACTCTTCCTCTTTATTTTAGTTTCAGATTTTTGGTATTTATCTCTGTGATTTTATTCATTCTTCACAATTTGCCATTCTTATACTTCGAGTCA i rheMac3.chr6 C 0 C 0 s papAnu2.JH683014 8364 138 + 14956 GAGTATGCCCTGTTAAACCATATTCTCTGCTAACCCCATTTACTCACTGTTCctctttattttagtttcagatttttggtatttatctctgtgattttattcattcttcacaATTTGCCATTCTTATACTTCGAGTCA i papAnu2.JH683014 C 0 C 0 s chlSab2.chr4 46900722 138 + 91010382 GAGTATGCCCTGTTAAACCATATTCTCTGCTAACCCCATTTACTCACTGTTCCTCTTTATTTTAGTTTCAGATTTTTGGTATTTATCTCTGTGATTTTATTCATTCTTCACAATTTGCCATTCTTATACTTCGAGTCA i chlSab2.chr4 C 0 C 0 s calJac3.chr2 47248612 133 - 204313951 GAGTATGCTCTGTTAAACCATATTCTCAGCTAACCCCATTTACTCACTGTTCCTC-----TTTAGTTTCACTTTCTTGCTATTTATCACTGTAATTTTATTCATTCTTCACAATTTGCCATTCTTACACTTTGAATCA i calJac3.chr2 C 0 C 0 e canFam3.chr4 23963185 354 - 88276631 I e macFas5.chr6 49881391 1 + 181584905 I a score=504818.000000 s hg38.chr1_KI270765v1_alt 89154 181 + 185285 TGTTATCAGTTTATAAT-ACCTCCATCAAATGATAGTCTGCATTTGTTTATCCTTGGCTGATTCAAAACACTTGGCATAATTTCCTTAAAGGAAATCATCTTCATCCCACCTCACAACACTGTATTATTTTCAATTAATTTCCAATAAACTCTTAATTGTCCATGCTCTGTCAGAGTTGGCA s panTro4.chr5 117710304 177 - 182651097 TGTTATCAGTTTAAAAT-ACCTCCGTCAAATGATAGTCTGCATTTGTTTATCCTTGGCTGATTCAAAACACTTGGCATAATTTCCTT----TAAATCATCTTCCTTCCATCTCACAACACTGTATTATTTTCAATTAATTTCCAATAAACTCTTAATTGTCCATGCTCTGTCAGAGTTGGCA i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48784586 177 + 183952662 TGTTATCAGTTTATAAT-ACCTCCATCAAATGATAGTCTGCATTTGTTTATCCTTGGCTGATTCAAAACACTTGGCATAATTTCCTT----TAAGTCATCTTCCTCCCATCTCACAACACCGTATTATTTTCAACTAATTTCCAATAAACTCTTAATTGTCTATGCCCTGTCAGAGTTGGCA i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54703148 170 + 109391073 TGTTATCAGTTTATAAT-ACCTCCATCAAATGATAGTCTGCATTTGTTTATCCTTGGCTGATTCAAAA-------CATAATTTCCTT----TAAATCATCTTCCTCCCACCTCACAACACTGTATTATTTTCAATTAATTTCCAATAAACTCTTAATTGTCCATGCTCTGTCTGAGTTGGCA i nomLeu3.chr12 C 0 C 0 s rheMac3.chr6 48558236 175 + 180491593 TGTTATCAGTTTATAAT-ACCTCCATCAAATGATAGTCTGCATTTGTTTATCCTTGGCTGATTCAAAACACTTGGCATAATTTCCTT----TAAATCCTCTTCCTCCCATCTCACAGCACTGTATTGTTTTCAATTAATTTCCAATAAACTCTTCATTGTCCATG--CTGTCAGAGTTGGCA i rheMac3.chr6 C 0 C 0 s papAnu2.JH683014 8502 175 + 14956 TGTTATCAGTTTATAAT-ACCTCCATCAAATGATAGTCTGCATTTGTTTATCCTTGGCTGATTCAAAACACTTGGCATAATTTCCTT----TAAATCCTCTTCCTCCCATCTCACAACACTGTATTGTTTTCAATTAATTTCCAATAAACTCTTCATTGTCCATG--CTGTCAGAGTTGGCA i papAnu2.JH683014 C 0 C 0 s chlSab2.chr4 46900860 175 + 91010382 TGTTATCAGTTTATAAT-ACCTCCATCAAATGATAGTCTGCATTTGTTTATCCTTGGCTGATTCAAAACACTTGGCATAATTTCCTT----TAAATCATCTTCCTCCCATCTCACAACACTGTATTGTTTTCAATTAATTTCCAATAAACTCTTCATTGTCCATG--CTGTCAGAGTTGGCA i chlSab2.chr4 C 0 C 0 s calJac3.chr2 47248745 177 - 204313951 TGTTATCAGTTTATAAT-GCCTTCATCAAATGATAGTCAGCATTTTTTTACCCTTGGCTGATTCAAAACACTTGGCATAATTTCCTT----TAAATCGTCTTCCTTCCATCTCAAAACACTGTATTATTTTCAATTAATTTCCAATAAACACTTAATTGTCCATGCTCTGTCAGAGTTGGCA i calJac3.chr2 C 0 C 0 s canFam3.chr4 23963539 177 - 88276631 TTTTATCAGTTTATGATAAACTTTCTCAAATGGTAGTTTGTCTTTGTTTATCCTTGGCTGATTCAAAGCACTTGGTATAATTTCCTT----TAAGTGGTC-TCCTCCCATTTCACAACACTGCATTATTTTCAATTAATTCCCAATAAACTCTTAATTGTCCATGCTCTGTTAGAGTTAACA i canFam3.chr4 I 354 C 0 e macFas5.chr6 49881391 1 + 181584905 I a score=1225663.000000 s hg38.chr1_KI270765v1_alt 89335 355 + 185285 GAGTTAATCCCTGTTTAAGCTAATAGGTTCAACTTCTTCAACAAACAAATCTTTCATGAAAGCTGCTGACAAGCCAGAGTATTAATTAAATCTAGTTTCATTGCTTCTCACTTTCCTTGATCCT--TCTCTCTTGTTCTTTGGGAAACAGTCACAGAGTTCTGGCGCTAATAAATACTA---TAAAAAGTAGGAAATACAGTCTAAAGAAGCAGAATATTCTGTTTAAAGTTGATGTGGTGCTTTTTGTGCACCAAGCATTGGCTCAAAAGCCTGAAAATTAGGCAGCAATACTTCCTAAGCTCATCTTCAACCATAAGGCAGAAAAGCCAAACATATCTGAAAATA--TAATATCACTGGT s panTro4.chr5 117710481 355 - 182651097 GAGTTAATCCCTATTTAAGCTGATAGGTTCAACTTCTTCAACAAACAAATCTTTCATGAAAGCTGCTGACAAGCCAGAGTATTAATTAAATCTAGTTTCATTGCTTCTCACTTTCCTTTATCTT--TCTCTCTTGTTCTTTGGGAAACAGTCACAGAGTTCTGGTGCTAATAAATACTA---TAAAAAGTAGGGAATACAGTCTAACGAAGCAGAATATTCTCTTTAAAGTTGATGTGGTGCTTTTTGTGCACCAAGCATTGGCTAAAAAGCCCAAAAATTAGGCAGCAAAACTTCCTAAGCTCATCTTCAACCATAAGGCAGAAAAGCCAAATGTATCTGAAAATA--TAATATCACTGGT i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48784763 355 + 183952662 GAGTTAATCCCTGTTTAAGCTAATAGGTTCAACTTCTTCAACAAATAAATCTTTCATGAAAGCTGCTGACAAGCCAGAGTATTAATTAAATCTAGTTTCATTGCTTCTCACTTTCCTTGATCTT--TCTCTCTTGTTCTTTGGGAAACAGTCACAGAGTTCTGGTGCTAATAAATACTA---TAAAAAGTAGGGAATACAGTCTAAAGAAGCAGAATATTATTTTTAAAGTTGATGTGGTGCTTTTTGTGCACCAAGCATTGGCTCAAAAGCCCAAAAATTAGGCAGCAATACTTCCTAAGCTCATCTTCAACCATAAGGCAGAAAAGCCAAACAAATCTGAAAATC--TAATATCACTGGT i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54703318 355 + 109391073 GAGTTAATCCCTGTTTAAGCTAATAGGTTCAACTTCTCCAACAAACAAATCTTTCATGAACGCTGCTGACAAGCCAGAGTATTAATTAAATCTAGTTTCATTGCTTCTCACTTTCCTTGATCTT--TCTCTCTTGTTCTTTGGGAAACAGTCACAGAGTTCTGGTGCTAATAAATACTA---TAAAAACTAGGGAATACACTCTAAAGATGCAGAATATTCTCTTTAAAGTTGATATGGTGTTTTTTGTGCACCAAGCATTGGCTCAAAATCCTGAAAATTAGGCAGCAATACTTCCTAAGTTCATCTTCAACCATAAGGCAGAAAAGCCAAACATATCTGAAAATA--TAATATCACTGGT i nomLeu3.chr12 C 0 C 0 s rheMac3.chr6 48558411 354 + 180491593 GACTTAATCCCTGTTTAAGCTAATAGGTTCAACTTCTTCAACAAACGAATCTTTCACGAAAGCTGCTGACAAGTCAGAGTATTAATTAACTCTAGTTTCATTGCTTCTCACTCTCCTTGATCTT--TATCTTTTGTTTTTTGGGAAACAGTCACAGAGTTCTGGTGCTAATAAATACTA---TAAAAAGTATGGAATACAGTCTGAAGAAGCAGAATGTTCTCTTTAAAGTTGATGTGGTGCTTTTTGTGCACTGAGCATTGGCTCAAAACCCCAAAAATTAGGCAGCCATAC-TCCTAAGCTCATCTTCAACCATAAGACAGAAAAGTCAAACATATCTGAAAATA--TAATATCACTGGT i rheMac3.chr6 C 0 M 743 s macFas5.chr6 49881392 354 + 181584905 GACTTAATCCCTGTTTAAGCTAATAGGTTCAACTTCTTCAACAAACGAATCTTTCATGAAAGCTGCTGACAAGTCAGAGTATTAATTAAATCTAGTTTCATTGCTTCTCACTCTCCTTGATCTT--TATCTTTTGTTTTTTGGGAAACAGTCATAGAGTTCTGGTGCTAATAAATACTA---TAAAAAGTATGGAATACAGTCTGAAGAAGCAGAATGTTCTCTTTAAAGTTGATGTGGTGCTTTTTGTGCACTGAGCATTGGCTCAAAACCCCAAAAATTAGGCAGCCATAC-TCCTAAGCTCATCTTCAACCATAAGACAGAAAAGTCAAACATATCTGAAAATA--TAATATCACTGGT i macFas5.chr6 I 1 C 0 s papAnu2.JH683014 8677 354 + 14956 GACTTAATCCCTGTTTAAGCTAATAGGTTCAACttcttcaacaaatgaatttttcaTGAAAGCTGCTGACAAGCCAGAGTATTAATTAAATCTAGTTTCATTGCTTCTCACTCTCCTTGATCTT--TATCTCTTGTTTTTTGGGAAATAGTCACAGAGTTCTGGTGCTAATAAATACTA---TAAAAAGTATGGAATACAGTCTGAAGAAGCAGAATGTTCTCTTTAAAGTTGATGTGGTGCTTTTTGTGCACCGAGCATTGGCTCAAAACCCCAAAAACTAGGCAGCCATAC-TCCTAAGCTCATCTTCAACCATAAGACAGAAAAGTCaaacatatctgaaaata--taatATCACTGGT i papAnu2.JH683014 C 0 C 0 s chlSab2.chr4 46901035 354 + 91010382 GACTTAATCCCTGTTTAAGCTAATAGGTTCAACTTCTTCAACAAACGAATCTTTCATGAAAGCTGCTGACAAGTCAGAGTATTAATTAAATCTAGTTTCATTGCTTCTCACTCTCCTTGATCTT--TATCTCTTGTTTTTTGGGAAACAGTCACAGAGTTCTGGTGCTAATAAATACTA---TAAAAAGTATGGAATACAGTCTGAAGAAGCAGAATGTTCTCTTTAAAGTTGATGTGGTGCTTTTTGTGCACCGAGCATTGGCTCAAAACCCCAAAAATTAGGCAGCCATAC-TCCTAAGCTCATCTTCAACCATAAGACAGAAAAGTCAAACATATCTGAAAATA--TAATATCACTGGT i chlSab2.chr4 C 0 C 0 s calJac3.chr2 47248922 350 - 204313951 GAGTTAATCCCTGTTTAAGCTAATAGGTTCAGCTTCTTCAACAAACAAATCTTTCATGAAAGCTGCTGACAAGCCAGAGTATTAATTAAATCTAGTTTCAATGCTTCTTACTTTCCTTGATCTT--TCTCTCTCGTTCTTCGGGAAATAGCCACAGAGTTCTGGTGCTAATAAATACTA---TAAGAAGTAGAGAATAAAGTCTAAAGAGGCAGATTGTTCTCTTTAAAGTTGATGTGGTGCTTTCTGTGCACCAAGCATTGGCTCAAAAGCCCAAAAATTAGGCAGCAATACTTCCTAAACTCATCTTCAACCATAAGGCAG--AAGCCAAACATATCTGAAAAT-----ATATCACTGGT i calJac3.chr2 C 0 C 0 s canFam3.chr4 23963716 355 - 88276631 --GTTAATCCCTGTTTAAGCTAATGGTTTCAACTTCTTCAACAAACAAATCTTTCATGAAAGCTGCTGACAACCCAGAGTATTAACTGAGTCTAGTTTCATTATTTCTCACGTTCCTTAATCTTTCTCTCTCTTATTCTTTGGGAAATAGTCATAGCA-TCTGGTGCTAGTATATGACATGTTAAAACCTAGAGAACTCAGTTCAAGGAGTCAAACTACTCTCCTTAAAACTGATATGA-ACTGCTTGTATACCAAGCTTCAGATGACAAGACCATAACTTGGGTAGTGGTAC-TCTCCAGCCCATTCTCAACCATAAGGCAGAAAA--CAAATACATCTGACAATATGTGATTTCCCTCGT i canFam3.chr4 C 0 C 0 a score=615080.000000 s hg38.chr1_KI270765v1_alt 89690 244 + 185285 ACCTTATACCAGCACTAAGAATAAGAAAACCCTGGAAAGTGGCTCGAGTACAGTA--------TTTTTCTATTGGAATTAATTTTTCAAAATGGAAAGGACTTCAttgttatttttattataaaattagtatatgtttattattaaaaataagtacaaaaatctctaaaagaaaaaggg-aaaaattaccagcagttccacattccagatatcatcactgttagcatttagg-atacaaatatccaaacacttt s panTro4.chr5 117710836 245 - 182651097 ACCTTATACCAGCACTAAGAATAAGAAAACCCTGGAAAGTGGCTCGAGTACAATA--------TTTTTCTATTGAAATTAATTTTTCAAAATGGAAAGGACTTCATTGttatttttattataaaattagtatatgtttattattaaaaagaagtacaaaaatctctaaaagaaaaaggg-aaaaattaccagcagttccacattccagagatcatcactgttagcatttaggtatacaaatatccaaacacttt i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48785118 245 + 183952662 ACCTTATACCAGCACTAAGAATAAGAAAACCCTGGAAAGTGGCTCAAGTACAATA--------TTTTTCTATTGGAATTAATTTTTCAAAATGGAAAGGACTTCATTGTTAtttttattataaaattagtatatgtttattattaaaaataataacaaaaatctctaaaagaaaaaggg-gaaaactaccagcagttccacattccagagatcatcactgttagcatttaggtatacaaatatccaaacacttt i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54703673 243 + 109391073 ACCTTATACCAGCATTAACAATAAGAAAACCCTGGAAAGTGGCTCGAGTACAATA--------TTTTTCTATTGGAATTAATttttcaaaatggaaaggacttcattgttatttttattacaaaatt--tgtatgtttattattaaaaataagtacaaaagtctctaaaagaaaaaggg-aaaaattaccagcagttccacattccagatatcatcactgttagcattTACATATATAAATATCTAAACACTTT i nomLeu3.chr12 C 0 C 0 s macFas5.chr6 49881746 245 + 181584905 ACCTTATACCAGCACTAAGAATAAGAAAACCCTGGAGAATGGCTCTAGTACAATA--------TTTTTCAATTGGAATTAATTTTTCAAAATGGAAAGGACTTCACTGCtatttttattataaaattagtatgtgttaattattaaaaataagtacaaaaagctataaaagaaaaaggg-aaaaattatcagcagttccacattccagagatcatcactgttagcatttaggtatacaaatatccaaacacttt i macFas5.chr6 C 0 C 0 s papAnu2.JH683014 9031 245 + 14956 ACCTTATACCAGCACTAAGAATAAGAAAACCCTGAAGAATGGCTCTAGTACAATA--------TTTTTCAattggaattaatttttgaaaatggaaaggacttcattgttatttttattataaaattagtatgtgttaattattaaaaataagtacaaaaatctataaaagaaaaaggg-aaaaattatcaGCAGTTCCACATTCCAGAGATCATCACTGTTAGCATTTAGGTATACAAATATCCAAACACTTT i papAnu2.JH683014 C 0 C 0 s chlSab2.chr4 46901389 245 + 91010382 ACCTTATATCAGCACTAAGAATAAGAAAACCCTGGAGAATGGCTCTAGTACAATA--------TTTTTCAATTGGAATTAATTTTTCAAAATGGAAAGGACTTCATTGttatttttattataaaattagtatgtgtttattattaaaaataagtacaaaaatctataaaagaaaaaggg-aaaaattatcagcagttccacattccagagatcatcactgttagcatttaggtatacaaatatccaaacacttt i chlSab2.chr4 C 0 C 0 s calJac3.chr2 47249272 220 - 204313951 ACCTTATACCAACACTAAGAATAAGAAAACCCTGGAATGTGGCTCTAGTA---TA--------TTTTTCAATTGGAATTAATTTTTCAAAATGAAAATGACTTCA---TTATTTTTACTATAACATTACTATATGTTTATCATTAAAAATAAGTACAAAATTCTCTAAAAGAAAAAGGGAAAAAAATACCAGCAGTTCCATATTCCAGAAATTGTC--------------------CAAATATCCAAACACTTT i calJac3.chr2 C 0 C 0 s canFam3.chr4 23964071 247 - 88276631 ATCTTCCATGAGCACCAAGAATCAGAAGCCACTGT----TGTATCAGATACAATGACACAATCTTTTTCAATTGGGATTAATTTTTCAAAATAGAAA-AACTTAATGGTTAtttttattataaaagtaa-atgcacttatcatttgtaaaaagcacaaaaatgtctaaaaggaaaacggaaaaaattaccagaggtcttacatcccagagacaatcactgttaacacttAGAAGTA-AAATATCCAAATATTTG i canFam3.chr4 C 0 I 31 e rheMac3.chr6 48558765 743 + 180491593 M a score=294956.000000 s hg38.chr1_KI270765v1_alt 89934 136 + 185285 ttctatcaatacatttaatttttaaatttgaccattacgcaatgtacacatgcactaaagcaccacactgtaccccataaacatgtgcaattattatgtcaattaaaaacaaaat-aaaagcattttacaaaaaatc s panTro4.chr5 117711081 133 - 182651097 tcctatcaatacaattaagttttaaatttgatcattatgcaatgtacacatgcactaaaacgtcacactgcaccccataaacatgtgca---attatgtcaattaaaaacaaaat-aaaaacattttacaaaaaatc i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48785363 136 + 183952662 tcctatcaatacaattaatttttaaatttgaccattatgcaatgtacacatgcactaaaacatcacactgcaccccataaacatgtgcaattattacgtcaattaaaaacaaaat-aaaaacattttacaaaaaatc i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54703916 136 + 109391073 TCCTATCAATACAATTAATTTTTAAatttgaccattatgcaatgtacacatgcactaaaacatcacactgtaccccataaacatgcgcaattattatgtcaattaaaaacaaaaT-AAAAGCATTTTACAAAAAATC i nomLeu3.chr12 C 0 C 0 s macFas5.chr6 49881991 137 + 181584905 ttctatCAATACAATTAATTTTTAAatttgaccattatgcaatgtacacttgcactaaaacaccatactgtaccccatgaacatatgcaattattatgtcaattaaaaacaaaaTAAAAAACATTTTACAAAACATC i macFas5.chr6 C 0 C 0 s papAnu2.JH683014 9276 137 + 14956 TCCTAtcaatacaattaatttttaaatttgaccaTTATGCAATGTACACTTGCACTAAAACACCATACTGTACCCCATGAACATATGCAAttattatgtcaattaaaaacaaaataaaaaacattttacaaaaaatc i papAnu2.JH683014 C 0 C 0 s chlSab2.chr4 46901634 137 + 91010382 tcCTATCAATACAATTAATTTTTAAatttgaccattatgcaatgtacatttgcaccaaaacaccatactgtaccccatgaacatatgcaattattatgtcaattaaaaacaaaaTAAAAAACATTTTACAAAAAATC i chlSab2.chr4 C 0 C 0 s calJac3.chr2 47249492 134 - 204313951 TCCTAACAATACAATTAATTTTTAAatttaactttcatacaatgtacacatgcatcgaaacatcacactgtaccccatacacatgtgcaattattatgtcaattaaaaacaaaaTTAAAAACG---TACCAAAAAAG i calJac3.chr2 C 0 C 0 e rheMac3.chr6 48558765 743 + 180491593 M e canFam3.chr4 23964318 31 - 88276631 I a score=1336340.000000 s hg38.chr1_KI270765v1_alt 90070 569 + 185285 atgttatttttaataacttgtt--tttctaattttatacaccataaaataaatgtctttacatgacatttattttatgataataactaatttattcattta----aacagcaaggtacatttcatt---ctaca-----gatatactatataatatttactccgatctctggatgagaatttatgttgcctgtaaat-----attgta-tcacaaacattataagaataatctctgtaaagg-tttccttcctg---aattattatttgggtagaaaaattactagaaatagaataactgggtcaaagattaaagacaatttaaatttcaatatatagaatcaaattattctccaaaatattgtacTCTACAGTA-------TTTGAATTTTGATTTTTTTCTCCATTTTCACTACTGCCAATAACTTTAATCTTTGTCGATAAATGAGACAA------AAAAGACAAAT-----AAT----GCAATATTATACA-AGGGAGATTAATAGGTAGAAAAAGAAATGC---AATGGCCAGGAGTAACAGAAGATGTTCAACATCAATCCAATCAAATTAATGCGTCTTTAA--AATGCAATAGCAGTCAATGTTAGCAAGAGT s panTro4.chr5 117711214 568 - 182651097 atgttatttttaataacttgtt--tttctaattgtatatatcacaaaataaatgtctttacatgacatttattttatgataataactaatttattcattta----aacagaaaggtacatttcatt---ctata-----gatatactatataatatttactctgatctctggatgagaatttatgttgcctgtaaat-----attgta-tcacaaac---ataagaatattctctataaagg-tttttttcctg---tattattatttgggtagaaaaattactagaaatagaataactgggtcaaagattaaaaacaatttaaacttcaatatatagaatcaaattattctccaaaatgtcgtacTGTACGGTA-------TTTGAATTTTGATTTTTTTCTCCATTTTCCCTACTGCCAATAACTTTAATCTTTGTCGATCAATGAGACAA------AAAAGACAAAT-----AAT----GCAATACTATACATAGGGAGATTAATAGGTAGAAAAAGAAATGC--AAATGGCCAGGAGTAACAGAAGATGTTCAACATCAATCCAATCAAAGTAATGAGTCTTTAA--AATGCAATAGCAGTCAATGTTAGCAAGATT i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48785499 567 + 183952662 atgttatttttaataacttgtt--tttctaattgtatacatcataaaataaatgtctttacatgacatttattttatgataatatttaatttattcattta----aacagcaatgtacatttcatt---ctaca-----gatatactatataatatttactctgatctctggatgagaatttatgttgcctgtaaat-----attgta-tcacaaac---ataagaata-tctctgtaaagg-tttttttcctg---tattattacttgggtagaaaaattactagaaatagaataactgggtcaaagattaaaaacaatttaaacttcaatatatcaaatcaaattattctccaaaatgtcgtacTGTACGGTA-------TTCGAATTTTGATTTTTTTCTCCATTTTCACTACTGCCAATAACTTTAAACTTTGTTGATCAATGAGACAA------AAAAGACAAAT-----AAT----GCAATACTATACATAGGGAGAGTAATAGGTAGAAAAAGAAATGC--AAATGGCCAGGAGTAACAGAAGATGTTCAACATCAATCCAATCAAATTAATGAGTCTTTAA--AATGCAATAGCAGTCAATGTTAGCAAGATT i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54704052 571 + 109391073 ATGTTATTTTTAATAAATTGTT--TTTCTAATTGTATACACCATAAAATAAATGTCCTTACATGACATTTATTTTATGATAATAACTAATTTATTCATTTA----AACAgcaaagtacatttcatt---ctaca-----gatatactatatagtatttactccaatctctggatgagaatttatgttgcctgtaaat-----attgta-tcacaaacattataagaataatctctgtaaaggttttttttcctg---tattattatttgggtagaaaaattactagaaatagaataactgggtcaaagattaaagacaatttaaatttcaatatatagaatcaaattattctccaaaatattgtacTCCACAGTA-------TTTGAATTTTGATTTTTTTCTCCATTTTCACTACTGCCAATAACTTTAATCTTTTTTGATCAATGAGACAA------AAAAGACAAAC-----AAT----GCAATATCATACA-AGGGAGATTAATAGGTAGAAAAAGAAATGC--AAATGGCCAGGAGTAACAGAAGATATTCAACATCAATCCAATCAAATTAATGAGTCTTTAA--AATGCAATAGCAGTCAATGTTAGCAAGAGT i nomLeu3.chr12 C 0 C 0 s macFas5.chr6 49882128 568 + 181584905 ATGTTGTTTTTAATAACTTGTGTATTTCTAATTGTATACACCATAAAACAAATGTTTTCACATAACCTTTATTTTATTATAATAACTAA-TTAGTCATTTA----AACAGCAAGGTacatttcaat---ctaca-----gatatactatataatatttactccaa--tctggatgagaatttatgttgcctgtaaat-----attgta-tcacaaacattgtaagaataatctctgtaaagg--ttttttcctg---tattattatttgggtagaaaaattactagaaatagaataactgggtcgaagattaaaaacaacttaaatttcaatgtatagcatcaagttattctctgaaatattgtacTGTACAGTA-------TTTGA------ATTTTTTTCCCCATTTTTACTACTGCCAATAACTTTAATCTTTGCAGATCAGTGAGACAaataataataataataat-----aat----GCAGTAGTATGCA-AGGGAGATGAATATGTAGAAAAAGAAATGC--AAATGGCCAGGAGTAATAGAAGATGTTCAACATCAATCTAATCAAATTAATGAATCTTTAA--AATGCAATAGCAGTCAATGTTAACAAGAAT i macFas5.chr6 C 0 C 0 s papAnu2.JH683014 9413 569 + 14956 ATGTTGTTTTTAATAACTTGTGTATTTCTAATTGTATACAccataaaacaaatgttttcacataacatttattttattataataactaatttattcattta----atcagcAAGGTACATTTCAAT---CTACa-----gatatactatataatatttaCTCCAA--TCTGGATGAGAATTTATGTTGCCTGTAAAT-----ATTGTA-TCACAAACATTGTAAGAATAATCTCTGTAAAGG--TTTTTTCCTG---TATTATTATTTGGGTAGAAAAATTACTAGAAATAGAATAACTGGGTCAAAGATTAAAAACAACTTAAATTTCAATGTATAGCATCAAGTTATTCTCTGAAATATTGTACTATacagta-------tttga------atttttttctccatttttactACTGCCAATAACTTTAATCTTTGCAGATCAGTGagacaaataataatgataataat-----aat----gcagTAGTATGCA-AGGGAGATGAATatgtagaaaaagaaatgc--aaatggccaGTAGTAATAgaagatgttcaacatcaatCTAATCAAATTAATGAATCTTTAA--AATGCAATAGCAGTCAATGTTAGCAAGAAT i papAnu2.JH683014 C 0 C 0 s chlSab2.chr4 46901771 570 + 91010382 ATGTTGTTTTTAATAACTTGTGTATTTCTAATTGTATACACCATAAAACAAATGTTTTCACATAACATTTATTTTATTATAATAACTAATTTATTCATTTA----AACAGCAAGGTACATTTCAAT---CTACA-----GATATACTATATAATATTTATTCCAA--TCTAGATGAGAATTCATGTTGCCTGTAAAT-----ATTATA-TCACAAACATTGTAAGAATAATCTCTGTAAAGG--TTTTTTCCTGTATTATTATTATTTGGGTAGAAAAATTACTAGAAATAGAATAACTGGGTCAAAGATTAAAAACAACATAAATTTCAATGTATAGCATCAAGTTATTCTCTGAAATATTGTACTGTACAATA-------TTTGA------ATTTTTTTCTCCATTTTTACTACTGCCAATAACTTTAATCTTTGCAGATCAGTGAGACAA--aataataataataat-----aat----GCAGTAGTATGCA-AGGGAGATGAATATGTAGAAAAAGAAATGC--AAATGGCCAGGAGTAATAGAAGATGTTCAACATCAATCTAATCAAATTAATGAATCTTTAA--AATGCAATAGCAGTCAATGTTAGCAAGAAT i chlSab2.chr4 C 0 C 0 s calJac3.chr2 47249626 571 - 204313951 ATGTTATTTTTAATAACTTATGTTTTTCTAATTGTATACACCACAAAATAAA--TCTTCACATGAC------TCTATA-----AACTAATTTATTCATTTA----AAGAGAAAAGTACATTTCAAT---CTACA-----GATATGCTATATAATATTTACTCAGATCTCTGCATGAGAATTTATGTTGCCTGTAAAT-----ATTGTA-TTAGAAACATTATAAGAATAATCTCTGtaaatgttttttttcctg---tattattatttgggtaggaaaattactagaaatagaataactgggtcaatgattaaaagcgatttaaattataatacatagaatcaaattatcctccaaaaTACTGCACTGTACAGCAATACAGTTTTGAGTTTTGTTTTTTTTCTCCATTTTCACTACTGCCAATATCTTTAGTCTTTGCCAGTCAATGAGGAAA------AAAAGACAAATAACTCAAT----ACAATACTATACA-AGGGAGATGAATAGGTAGGAAAA-AAATGC--AAATAACCAGGAGTAACAGAAGATATTCAACATCAGTccaatcaaatgaatgaatctttaa--aatgcaataacagtcagtgttagcaagggt i calJac3.chr2 C 0 C 0 s canFam3.chr4 23964349 564 - 88276631 ATTTTATTTTGAATAACCTGTGTTTCACTAATTATACGTAGCATGAAAT-AATGTCATCCCTTGACA-----------ATATAAACCAATCCATTATTTTACCTTGCTAGCAAGATAAATTTCattgcattatatatatgatataccatgaaatatttactgaggcctctggatgggaatttaagttgctcataattttctgattatagttataaacattataaatgtaatctttgcaaaaa-tattttttctg------tgttatttgtgtaggaaaattactagagggataattgctagatcacagatttataacaatttaaatttcaagatattgggactaattgtccttcaAATTATTGTACAGAATTGTA-------TTTGA------GTTTTTCTCCC---TTTCACTAGAGCCAATCATTTCAATTTTTGCCAAACTCTGAGATAG------AAAAGAAAAAA-----AATCCAAACAATAATATACA-A-GGAGATTAATAGGTAGAAAAAGAAACACACaaatgaccaag---------agatgatcaatatcagtccaatcagattagcgaaactttaaagaatgcaataatattcagtgttagcaagtgt i canFam3.chr4 I 31 C 0 e rheMac3.chr6 48558765 743 + 180491593 M a score=926953.000000 s hg38.chr1_KI270765v1_alt 90639 316 + 185285 GTAGGTATTAGACATTCTCA-----------TAGGAATATAAACTAGGGCCATGTTTTAGGATCATATTAGATCGCAGCAATTAAAAAATGTTAAATTCATATGTTGTATAGCAACTTCTCAGGTTGGAATTTATCACATGGAGAATCTTGTAA-AATACATAAACCAAGATATGTTATTAATGTTATTGGTAGCCTATTGTTTTAATAAAA---AATATATTTATACAATACAGTTGTTAAAAGTTAAGAATATCTTGAAG--------------------------------------------------------------------------------------------------------------------------------------------GTAAATTATTAAACAAAAATAGAATGCCTAGGCCAGGCAAGACTTCATctcatgct-tataatcccaaca s panTro4.chr5 117711782 315 - 182651097 GTAGGTATTAGACATTCTCA-----------TAGGAATATAAACTAGGGCCATGTTTTAGGATCATATTAGGTCACAGCAATTAAAAAATGTTAAATTCATATGCTCTATAGCAACTTCTCAGGTTGGAATTTATCACATGGAGAATCTTGTAA-AATACATAAACCAAGATATGTTATTAATGTTATTCGTAGCCTATTGtttaaataaaa---aatatatttaCACAATACAGTTTTTAAAAG-TAAGAATATCTTGAAG--------------------------------------------------------------------------------------------------------------------------------------------GTAAATTATTAAACAAAAATAGAAAGCCTAggccaggcgagactttatctcatgct-tgtaatcccaaca i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48786066 315 + 183952662 GTAGGTATTAGGCATTCTCA-----------TAGGAATATAAACTAGGGCCATGTTTTAGGATCATATTAGGTCACAGCAATTAAAAAATGTTAAATTCATATGCTCTATAGCAACTTCTCAGGTTGGAATTTATCACATGGAGAATCTTGTAA-AATACATAAACCAAGATATGTTATTAATGTTATTGGTAGCCTATTGtttaaataaaa---aatatatttaCACAATACAGTTTTTAAAAG-TAGGAATATCTTGAAG--------------------------------------------------------------------------------------------------------------------------------------------GTAAATTATTAAACAAAAATAGAAAGCCTAGGCGGGACGAGACTTTATctcatgct-tgtaatcccaaca i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54704623 314 + 109391073 GTAGGTATTAGACATTCTCA-----------TAGGAATATAAACTAGGGCCATGTTTTA-GATCATATTAGGTCACAGCAATTAAAAAATGTTAAATTCATATGCTCTATAGCAACTTCTCAGGTTGGAATTTATCACATGGAGAACTTTGTAA-AATACATAAACTAAGATACGTTATTAACATTATTGGTAGCCTATTGCTTAAATAAAA---AATATATTTACACAATACAGTTGTTAAAAG-TAAGAATATCTTGAAG--------------------------------------------------------------------------------------------------------------------------------------------GTAAATTATTAAACAAAAATAGAAAGTCTAggccaggtgagactttatctcatgtt-tgtaatcccaaca i nomLeu3.chr12 C 0 C 0 s rheMac3.chr6 48559508 313 + 180491593 GTAGGTATTAAACATTCTCA-----------TAAGAATATAAACTAAGACTGTGTTTTAGGATTATATTAGGTCACAGCAATTAAAAAATGTTAAATGCATATGCTCTATAGCAACTTCTCAGGTTGGAATTTATCACATGGAGGATCTTGTAAAAATACATAAACCAAGATATGTCATTAATATTATTGGCAGCCTATTGtttaaataaaa---aatatatttaCACAATACAGTTGTTAAAAG-TAACAATATCTTGAAT--------------------------------------------------------------------------------------------------------------------------------------------GTAAATTATTAAACAAGAATAGAAAGCCTAggctgggtgaaac---agctcatgcc-tgtaattccaaca i rheMac3.chr6 M 743 C 0 s macFas5.chr6 49882696 389 + 181584905 GTAGGTATTAAACATTCTCA-----------TAAGAATATAAACTAAGACTGTGTTTTAGGATTATATTAGGTCACAGCAATTAAAAAATGTTAAATGCATATGCTCTATAGCAACTTCTCAGGTTGGAATTTATCACATGGAGGATCTTGTAAAAATACATAAACCAAGATATGTCATTAATATTATTGGCAGCCCATTGTTTAAATAAAA---AATATATTTACACAATACAGTTGTTAAAAA-TAACAATATCTTGAATGTAAATTATTAAAC----------------------------------------------------------------AAAAATAGAAAGCCTAGGCATATTTACACAATACAGTTGTTAAAAGTAAGAATATCTTGAAGGTAAATTATTAAACAAAAATAGAAAGCCTAggctgggtgaaac---agctcatgcc-tgtaattccaaca i macFas5.chr6 C 0 C 0 s papAnu2.JH683014 9982 389 + 14956 GTAGGTATTAAACATTCTCA-----------TAAGAATATAAACTAGGACTGCGTTTTAGGATCATATTAGGTCACAgcaattaaaaaatgttaaatgcataTGCTCTATAGCAACTTCTCAGGTTGGAATTTATCACATGGAGGATCTTGTAACAATACATAAACCAAGATATGTCATTAATGTTATTGGCAGcctattgtttaaataaaa---aatatatttacacaatACAGTTGTTAAAAG-TAACAATATCttgaatgtaaattattaaac--------------------------------aaaaatagaaagcctAGGCATATTTACACAAT--------------------------------ACAGTTGTTAAAAGTAAGAATATCTTGAAAgtaaattattaaacaaaaatagaaagcctAGGCTGGGTGaaac---agctcatgcc-tgtaattccaaca i papAnu2.JH683014 C 0 C 0 s chlSab2.chr4 46902341 389 + 91010382 GTAGGTATTAAACATTCTCA-----------TAGGAATATAAACTAGGACTGTGTTTTAGGATCATATTAGGTCACAGCAATTAAAAAATGTTAAATGCATATGCTCTATAGCAACTTCTCAGGTTGGAATTTATCACATGGAGGATCTTGTAAAAATACATAAACCAAGACATGTCATTAATGTTATTGGCAGCCTATTGTTTAAATAAAA---AATATATTTACACAATAGAGTTGTTAAAAG-TAAGAATATCTTGAATGTAAATTATTAAACAAAAATAGAAAGCCTAGGCATATTTACACAAT----------------------------------------------------------------ACAGTTGTTAAAAGTAAGAATATCTTGAAGGTAAATTATTAAACAAAAATAGAAAGCCTAggctgggtgaaac---agctcatgcc-tgtaattccaaca i chlSab2.chr4 C 0 C 0 s calJac3.chr2 47250197 310 - 204313951 gtaggtatcagacattctca-----------taGGAATATAAATTTGGGCCATGTTTTAGAATGATATTAGGTCACAGCAATTAAAAAATGTTAAATTCATATGCTCTATAGCAACCTCATGAGTAGGAATTTATTGCATGGAGAATCTTGTAA-AACACATAAACCAAGATATGTTATTAATGTTATTGGTAGCCTATTGTTTAAATTACA---AATATATTTACACAATGCAATTGTTAAAAG-TAAGA--ATCTTGAAA--------------------------------------------------------------------------------------------------------------------------------------------GTAAATTATTAAACAAAAATATAAAGCCTAggttgggcaagac---agctcatgcc-agtaatcatgaca i calJac3.chr2 C 0 C 0 s canFam3.chr4 23964913 294 - 88276631 ----gtattagacattctcaaatgatactggtaggaatataaactagggccttgttttggaggtttatttggtcacagc-attaaagaatattatat--------tccacagcactttcactga--agaatttatcacagagataatcttgaaaaaatacataaaccaaaatgtgttattgatgttagtggcagcagattatttaaataAAGCATAACATATTCATACAATGCAGTTG-TAAAGG-TAGTAATATCTTGGAG--------------------------------------------------------------------------------------------------------------------------------------------ATCAATTATT---------TAAAGAACC--------ACCAAAC----TTTCATGATATATATGCCCATCA i canFam3.chr4 C 0 I 47 a score=239458.000000 s hg38.chr1_KI270765v1_alt 90955 87 + 185285 cttttggagactgaggtgggaggattgcttgagcccaggagtttgagaccaacctgggcaacacagtgagacctcatctctag--------------a-aaa s panTro4.chr5 117712097 88 - 182651097 cttttgtagactgaggcgggaggattgctcgagcccaggagtctgagaccaacctggacaacacagtgagacctcgtctctag-------------aa-aaa i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48786381 95 + 183952662 cttttggagactgaggcgggaggattgcttgagcccaggagtttgagaccaacctggacaacacagtgagacctcgtctctagaaaa------aaaaa-aaa i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54704937 89 + 109391073 cttttggagactgaggcgggaggattgcttgagcccaggagtttgagaccaacctgggcaacagagtaagacctcatttctag------------aaa-aaa i nomLeu3.chr12 C 0 C 0 s rheMac3.chr6 48559821 87 + 180491593 ctttgggaggctgaggcgggaggattgcttgagcccaggagtttgagaccaacctgggcagcacagtgagacctcgtgtctag--------------g-aaa i rheMac3.chr6 C 0 C 0 s macFas5.chr6 49883085 88 + 181584905 ctttgggaggctgaggcgggaggattgcttgagcccaggagtttgagaccaacctgggcagcacagtaagacctcgtgtctag--------------gaaaa i macFas5.chr6 C 0 C 0 s papAnu2.JH683014 10371 87 + 14956 ctttgggaggctgaggcgggaggattgcttgagcccaggagtttgagaccaacctgggcagcacagtgagacctcgtgtctag--------------g-aaa i papAnu2.JH683014 C 0 C 0 s chlSab2.chr4 46902730 87 + 91010382 ctttgggaggctgaggagggaggattgcttgagcccgggagtttgagaccaacctaggcagcacagtgagacctcgtgtctag--------------g-aaa i chlSab2.chr4 C 0 C 0 s calJac3.chr2 47250507 101 - 204313951 ttttgggaggctgaggagggaggattgcttgagcccaggagtttgagaccaacctgggcaacacagacagacctcatctctagaaaaaaaaGTAAACA-ATA i calJac3.chr2 C 0 C 0 e canFam3.chr4 23965207 47 - 88276631 I a score=509271.000000 s hg38.chr1_KI270765v1_alt 91042 148 + 185285 aaaaaaTACAAAGCCTA-GTTCTGAACATCCTTTTGTGTAATACTAAAAGATAAAA-TTTTATTTTCT---ACCTTGTTTAAGATCTATATTCTATAC-GGGGGATGTGTATTAAGGTCATTTTTAAAAAGATACTCAAGAAATTGTCAACAGT s panTro4.chr5 117712185 148 - 182651097 aaaaaaTACAAAGCGTA-GTTCTGAACATCATTTTGTGTAATACTAAAAGATAAAA-TTTTATTTTCT---AACTTGTTTAAGATCTATATTCTATGT-GGGGGATGTGTATTAAGGTCATTTTAAAAAAGATACTCAAGAAATTGTCAACAGT i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48786476 148 + 183952662 aaaaaaTACAAAGCGTA-GTTCTGAACATCCTTTTGTGTAATACTGAAAGATAAAA-TTTTATTTTCT---AACTTGTTTAAGATCTATATTCTATAC-GGGGGATGTGTATTAAGGTCATTTTTTAAAAGATACTCAAGAAATTGTCAACAGT i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54705026 148 + 109391073 aaaaaaTACATAGCCTA-GCTCTGAACATCCTTTTGTGTAATACTAAAAGATAAAA-TTTTTTTTTCT---AACTTGTTTAAGATCTATATTCTATAT-GGGGGATGTATATTAAGATCATTTTAAAAAAGATACTCCAGAAATTGTCAACAGT i nomLeu3.chr12 C 0 C 0 s rheMac3.chr6 48559908 148 + 180491593 aaaaaaTAGAAAGCATA-GTTCTGAACATCCTGTTGTGTAATACTAAAAGATAAAA-TTTTATTTTCT---ATCTTGTTTAAGATCTATATTCTATAC-GGGGGATGTGCATTAACGTCATTTTTAAAAAGATACTCAAGAAATTGTCAACAGT i rheMac3.chr6 C 0 C 0 s macFas5.chr6 49883173 148 + 181584905 aaaaaaTAGAAAGCATA-GTTCTGAACATCCTTTTGTGTAATACTAAAAGATAAAA-TTTTATTTTCT---ATCTTGTTTAAGATCTATATTCTATAT-GGGGGATGTGCATTAACGTCATTTTTAAAAAGATACTCAAGAAATTGTCAACAGT i macFas5.chr6 C 0 C 0 s papAnu2.JH683014 10458 148 + 14956 aaaaaatagaaagcata-gTTCTGAACATCCTTTTGTGTAAtactaaaagataaaa-ttttattttct---atcttgtttAAGATCTATATTCTATAC-GGGGGATGTGCATTAACGTCATTTATAAAAAGATACTCAAGAAATTGTCAACAGT i papAnu2.JH683014 C 0 C 0 s chlSab2.chr4 46902817 147 + 91010382 aaaaaa-agaaAACATA-GTTCTGAACATCCTTTTGTGTAATACTAAAAGATAAAA-TTTTATTTTCT---ATCTTGTTTAAGATCTATATTCTATAC-GGGGGATGTGTATTAACGTCATTTTTAAAAAGATACTCAAGAAATCGTCAACAGT i chlSab2.chr4 C 0 C 0 s calJac3.chr2 47250608 150 - 204313951 AAAAAATACAAAGCCTA-GTTCTGAACATCCTTTTGTGtaatattaaaagataaaatttttattttCT---AACTTGTTTAAGATCTATATTGCATACAGGGGGATGTGTATTAAGGTCATTTTAAAAAAGATATTCAAGAAATTGTCAACAGT i calJac3.chr2 C 0 C 0 s canFam3.chr4 23965254 152 - 88276631 GAAAAATATAAAGCCTAGGTTTTGAACATCCTTTTGTATAATTCTAAAAGATATAG-CCATATTTTCTCTAAACTTGTTTAAGATTTAGATTCTATAT-AGGGGATATATCTTAAAGTAATTTTTAGAAAGATGTTCAAGAAACCATCAACTGT i canFam3.chr4 I 47 I 103 a score=634205.000000 s hg38.chr1_KI270765v1_alt 91190 221 + 185285 GATTATCTTAAGGAGAGATTCTAGATGTCTGGGGGTAAGAGACAGGAGGAAAGAGAATTTTATATTTCATTTTTACCTTTATTTAACTTTTTGATTTTCTTACTGGGTGCATGAATTATATTTTTATGTCAGCATGTTTTATCAGATAAATAAAATTATGAGCTATTTCTGTTTTCTCTCATTTGTTTTATGTTTAAATAAAGGAAAATGAGATATGTCTT s panTro4.chr5 117712333 221 - 182651097 GATTATCTTAAGGAGAGATTTTAGATGTCTGGGGGTAAGAAACTAGAGGAAGGAGAATTTTATATTTCATTTTTACCTTTATTTAATTTTTTGATTTTCTTACTGGGTGCATGAATTATATTTTTATGTCAGCATGTTTTATCAGATAAATAAAATTATGAGCTATTTCTGTTTCCTCTCATTTGTTTTATGTTTAAATAAAGGAAAATGAGGTGTGTCTT i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48786624 221 + 183952662 GATTATCTTAAGGAGAGATTCTAGATGTCTGGGGGTAAGAGACTAGAGGAAGGAGAATTTTATATTTCATTTTTACCTTTATTTAATTTTTTGATTTTCTTACTAAGTGCATGAATTATATTTTTATGTCAGCGTGTTTTATCAGACAAATAAAATTATGAGCTATTTCTGTTTCCTCTCATTTGTTTTATGTTTAAATAAAGGAAAATGAGGTATATCTT i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54705174 206 + 109391073 GATTATCTTAAGGAGAGATTCTAGATGTCTGGGGGTAAGAGACTAGAGGA---AGAATTTTATATTTCATTTTTACC----TTGAATTTTTTTATTTTCCTACAGGGTGCATGAATTATATTTTTATGTCAGCATGTTTTATCAGATAAATAAAATTATGAGCTATTTCTGTTTTCTCTCATTTGTTTTATGTTTAAATAAAGGAAA--------TGTCTT i nomLeu3.chr12 C 0 C 0 s rheMac3.chr6 48560056 220 + 180491593 GATTATCTTAAGGAGAGATTCTAGAAGTTTGGGGGTAAGAGACTAGAGGAAGGAGAATTTTATATTTCATTTTTACCTTTATTTAATTTTTTGATTGTCTTACTGGATGCATGAATTATA-TTTTATGTCAGCATATTTTATCAGATAAATAAAATTATGAGCTATTTCTGTTTCCTCTCATTTGTTTTATTTTTAAATAAAGGAAAATGAGGTACGTCTT i rheMac3.chr6 C 0 C 0 s macFas5.chr6 49883321 220 + 181584905 GATTATCTTAAGGAGAGATTCTAGAAGTTTGGGGGTAAGAGACTAGAGGAAGGAGAattttatatttcatttttacctttatttaattttttgattttCTTACTGGATGCATGAATTATA-TTTTATGTCAGCATATTTTATCAGATAAATAAAATTATGAGCTATTTCTGTTTCCTCTCATTTGTTTTATTTTTAAATAAAGGAAAATGAGGTACGTCTT i macFas5.chr6 C 0 C 0 s papAnu2.JH683014 10606 220 + 14956 GATTATCTTAAGGAGAGATTCTAGATGTTTGGGGGTAACAGACTAGAGGAAGgagaattttatatttcatttttacctttatttaattttttgattttcttaCTGGATGcatgaattata-ttttatgtcaGCATGTTTtatcagataaataaaattatgagctatttctgttttctctcatttgttttatttttaaataaaggaaaatgaggtatgtctt i papAnu2.JH683014 C 0 C 0 s chlSab2.chr4 46902964 220 + 91010382 GATTATCTTAAGGAGAGATTCTAGATGTTTGGGGGTAAGAGACTAGAGGAAGGAGAattttatatttcatttttacctttatttaattttttgattttCTTACTGGATGCATGAATTATA-TTTTACTTCAGCATGTTTTATCAGATAAATAAAATTATGAGCTATTTCTGTTTCCTCTCATTTGTTTTATTTTTAAATAAAGGAAAATGAGGTACGTCTT i chlSab2.chr4 C 0 C 0 s calJac3.chr2 47250758 216 - 204313951 GATTATCTTAAGGAGAGATTCTCAATGTTTGGGCGTGAGAGACTAGAGGAAGGAGAATTTTATATTTCATTTTTACCTTTATTTAATTTTTGGATTTTCTTACCAGGTGCATGAAT-----ATTTATTTCAGGATGTTTTATCAGGTAAATAAAAGTGTGAGGTATTTCTGTTTCCTCTCATTTGTTTCATGTTTGAAGAAAGGAAAATAAGGTATGTCTT i calJac3.chr2 C 0 C 0 e canFam3.chr4 23965406 103 - 88276631 I a score=3662904.000000 s hg38.chr1_KI270765v1_alt 91411 1022 + 185285 TTT-AAATTAGATAATCTTGAGTCCATGATTATTATGAAAGCCCTCTGTTATCTTTTTCCTTCCTTTCACAATGACTATTTATGTTGTAGAATCATTAATTTCTCAAGACAAATGTCTTAGAAGGTAGATACAAAAAAATGGTATACATTTTTTGATTCAAGCTAATTTCATGTTACGAACAAAATTACGTAATGTCA--TTTCTAAGACCTTTCTGTGATCTATCAATCCACTAGGTTAAAGAGCAGAAATCACTTCCAAAACAAATCCTTTTGCAGTCAGCAAAATGAAGCAATTATATGAATAAGTTTTTCCACTTGGCCTATTTTTCTACCCATGGTTATTAATCAGTCTCACTGACTACATTTTCCGTTTTACATCCCCTTTCAGGCACTACTGCAGATGGCCAAGCATATCACATTATGTAAATAAAATAAAACAAAATCTTTTCCCATTGAGCAAATGGATATACTTCACCT---CTAATGCTTCCAGTCTTTCTCAGATCATTCAAAAAGCATGATATGGTTTCCATGAAAGGACA---------TTCATCCCATTTGACTAACTGGAATTTC------------TTTACTCCAGCTAATCTTTACCAAAGAGCTGAATTAATTCAAGTTGACACCCTGTT---ATCTACCAGCTCTTCCAGCCCTTTTGCTTGATTGTTTTGTCATTTTGCCTTTTCTTTTCTTCTAAAGTGGGAGTATGGAGATTTACCCTTCTGAAACAGCTGTGTCACATCATGATCCTTGAGAATATCAgctcttaa--ctggctgcacatcaaaatcactgtttcctttgaccaatactctagacacactcaagcagagattctggattctgatttaattgacacagagtagggcctgggca--tttttacagctccccacatgattctattgtgcCTCATCTATCCTAGCCCTTAAGCAGGACCAAACATTTGTTCTATCTTAATTATTATTCTCTTAAACTTAGTCCAATTCCTTACAACTGATAGCTTTCTATATACTCATCTGCCTTGAGTGATGACA s panTro4.chr5 117712554 1034 - 182651097 TTTAAAATTTGATAATCTTGAGTCCATGATTATTATGAAAGCCCTCTGTTATCTGTTTACTTCCTTTCACAATGACTGTTTATGTTGTAGAATCATTAATTTCTCAAGACAAATGTCTTAGAAGGTAGATAC-AAAACATGGTATACATTTTTTGATTCAAGCTAATTTCATGTTATGAACAAAATTACATAATGTCA--TTTCTAAGACCTTTCTGTGATCTATCAATCTACTAGGTTAAATAGCAGAAATCACTTCCAAAACAAATCCTTTTGCAGTCAGCAAAATGAAGCAATTATGTGAATAAGTTTTTCCACTTGGCCTATTTTTCTGTCCATGGTTATTAATCAGTCTCACTGACTACATTTTCCATTTTACATCCCCTTTCAGGCACTACTCCAGGTAGCCAAGCATATCACATTATGTAAATTAAATAAAACAAAATCTTTTCCCATTGAGCAAATGGATATACTTCACCT---CTAATGCTTCCAGTCTTTCTCAGATCATTCAAAAAGCGTGATATTGTTTCCATAAAAGGACG---------TTCATCCCATTTGACTAACTGGAATTTCTTTAAGTAAAATTTTACTCCAGCTAATCTTTACCAAATAGCTGAATTAATTCAAGTTGACACCCTGTT---ATCTACCAGCTCTTCCAGCCCTTTTGCTTGATTGTTTTGTCATTTTGCCTTTTCTTCTCTTCTAAAGTGGGAGTATGGAGATTGACCCTTCTGAAACAGCTGTGTCACATCATGATCCTTGAGGATACCAgctcttaa--ctggctgcacatcaaaatcactgttttcttttaccaatacactagacacactcaagcagagattctggattctgatttaattgacacagagtagggcctgggca--tttttaaagctccccacatgattctattgtgcCTCATCTATCCTAGCCCTTAAGCAGGACCAAACATTTCTTCTAACTTAATTATTATTCTCTTAAACGTAGTCCAATTCCTTACAACTGATAGATTTCTATATGCTCATCTGCCTTGAGTGATGACA i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48786845 1034 + 183952662 TTTAAAATTTGATAATCTTGAGTCCATGATTATTATGAAAGCCCTCTGTTACCTTTTTACTTCCTTTCTGAATGACTGTTTGTGTTGTAGAATCATTAATTTCTCAAGACAAATGTCTCAGAAGGTAGATAC-AAAAAATGGTATACATTTTTTTATTCAAGCTAATTTCATGTTATGAACAAAATTACATAATGTCA--TTTCTAAGACCTTTCTGTGACCTATCAATCCACTAGGTTAAATAGCAGAAATCACTTCCAAAACAAATCCTTTTGCAGTCAGCAAAATGAAGCAATTATATGAATAAGTTTTTCCACTTGGCCTATTTTTCTGCCCATGGTTATTAATCAGTCTCACTGACTACATTTTCCATTTTACATCCCCTTTCAGGCACTACTCCAGGTGGCCAAGCATATCACATTATGTAAATTAAATAAAACAAAATCTTTTCCCATTGAGCAAATGGATATACTTCACCT---CTAATGCTTCCAGTCTTTCTCAGATCATTCAAAAAGCATGATATGGTTTCCATAAAAGGACA---------TTCATCCCATTTGACTAACTGGAATTTCCTTAAGTAAAATTTTACTCCAGCTAATCTTTACCAAATAGCTGAATTGATTCAAGTTGACACCCTGTT---ATCTACCAGCTCTTCCAGCCCTTTTGCTTGATTGTTTTGTCATTTTGCCTTTTCTTCTCTTCTAAAGTGGGAGTATGGAGATTGACCCTTCCGAAACAGCTGTGTCATATCATGATCCTTGAGGATACCAgctcttaa--ctggctgcacatcaaaatcactgtttccttttaccaatactctagacacactcaagcagagattctggattctgatttaattgacacagagtagggcctgggca--tttttaaagctccccacatgattctgttgtgcCTCATCTATCCCAGCCCTTAAGCAGGACCAAACATTTCTTCCATCTTAATTATTATTCTCTTAAACTTAGTCCAATTCATTACAACTGATAGATTTCTATATACTCATCTGCCTTGAGTGATGACA i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54705380 1034 + 109391073 TTTAAAATTTGATAATCTTGAGTCCATGATTATTATGAAAGCCCTTTGTTATCTTTTTACTTCCTTTCACAATGACTGTTTATGTTGTAGAATCATTAATTTCTCAAGACAAATGTCTTAGAAGGTAGATAT-GAAAAATGGTATACATTTTTTGATTCAAGCTAATTTCATGTTATGAACAAAATTACGTAATGTCA--TTTCTAAGACCTTCCTGTGACCTATCAATCCACTAGGTTAAATAGCATAAATCATTTTCAAAACAAATCCTTTTGCAGTCAGCAAAATGAAGCTATTATATGAATAAGTTTTTCCACTTGGCCTATTTTTCTGCCCATGGTTATTAATCAGTCT--CTGGCTACATTTACCACTTTACATCCCCTTTcaggcactactctaggtggccaagcatatcacattatgtaaataaaataaaacaaaatcttttcccattgagcAAATGGATATACTTCACCT---CTAATGCTTCCAGTCTTTCTCAGATCATTCAAAAAGCATGATATGGTTTCCATAAAAGGACA---------TTCATCCCATTTGACTAACTGGAATTTCTTTAAGTAAAA-TTTACTCCAGCTAATCTTTACCAAATAGCTGAATTAATTCAAGTTGACACCCTGTTATCATCTACCAGCTCTTCCAGTCCTTTTGCTTGATTGTTTTTTCATTTTGCCTTTTCTTCTCTTCTAAAATGGGAGTATGGAGATTGACCCTTCTGAAACAGCTGTATCACATCATGATCCTTGAGGATACCAGCTCTTAA--CTGGATGCACATCAAAATCACTGTTTCCTTTTACCAATACTCTAGACACACTCAAGCAGAGATTCTGgattctgatttaattgacacagagtagggcctgtgta--ttttgaaagctccccacatgattctattgtgcCTCATCTATCCTAGCCCTTAAGCAGGACCAAACGTTTCTTCTATCTTAATTATTATTCTCTTAAACTTAGTCCAATTCCTTACAACTGATAGATTTCTATATACTCATCTGCCTTGAGTGATGACA i nomLeu3.chr12 C 0 C 0 s rheMac3.chr6 48560276 1031 + 180491593 TTTAAAATTTGATAATCTTGAGTCCATGATTATTATGAAAGCCCTCTGTTATCTTTTTACTTCCTTTCACAGTGACTGTTTGTGTTATAGAA----CAATTTCTCAAGACAGATGTCATAGAAGGTAGATAC-AAAAAATGAT-TACATTTGTTTATTCAAGCTAATTTCATGTTATGAACAAAATTATGTAATGTCA--TTTCTAAGACCTTTCTGTGATCTATCAGTCCACTAGGTTAAATAGCAGAAATCACTTCCAAAACAAATCCTTTTGCAGTCAGCAAAATGAAGCAATTATATGAATAAGTTTTTCCACTTGGCTTATTTTTCTGCCCATGGTTATTAATAAGTCTCACTGACTACATTTTCCATTTTACATCCCCTTTCAGGCACTACTCCAGGTGGCCAAGCATATCACATTATGTAAATAAAATAAAAC-AAATCTTTTCCCATTGAGCAAATGGATATACTTCATCTATACTAATGCTTCCAGTCTTTCTCAGATCATTCAAAAAGCATGATATGGTTTTCATAAAAGGACA---------TTCATCCCATTTGACTAACTGGAATTTCTTTAAGTAAAATTTTACTCCAGCTAATCTTTACCAAATAGCTGAATTAAGTCAAGTTGACACCCTGTT---ATCTACCAGCTCTTCCAGCCCTTTTGCTTGATTGTTTTGTCATTTTGCCTTTTCTCCTCTTCTAGAGTGGGAGTATGGAGATTTACCCTTCTGAAACAGCTGTGTCACATCATGATCCTTGAGGATACCAgttcttaa--ctggctgcacatcaaaatcactgtttccttttaccaatactctagacacactcaagcagacattctggattctgatttaattgacacagagtagggcctgggca--tttttaaagctcctcacatgattctattgtgcCTCATCTATCCTAGCCCTTAAGCAGGACCAAACATTTCTTCTGTCTTAATTATTACTCTCTTAAACTTAGTCCAATTCCTCACAACTGATAGATTTCTACATACTCATCTGCCTTGAATGATGACA i rheMac3.chr6 C 0 C 0 s macFas5.chr6 49883541 1031 + 181584905 TTTAAAATTTGATAATCTTGAGTCCATGATTATTATGAAAGCCCTCTGTTATCTTTTTACTTCCTTTCACAGTGACTGTTTGTGTTATAGAA----CAATTTCTCAAGACAAATGTCATAGAAGGTAGATAC-AAAAAATGAT-TACATTTGTTTATTCAAGCTAATTTCATGTTATGAACAAAATTATGTAATGTCA--TTTCTAAGACCTTTCTGTGATCTATCAATCCACTAGGTTAAATAGCAGAAATCACTTCCAAAACAAATCCTTTTGCAGTCAGCAAAATGAAGCAATTATATGAATAAGTTTTTCCACTTGGCCTATTTTTCTGCCCATGGTTATTAATCAGTCTCACTGACTACATTTTCCATTTTACATCCCCTTTCAGGCACTACTCCAGGTGGCCAAGCATATCACATTATGTAAATAAAATAAAAC-AAATCTTTTCCCATTGAGCAAATGGATATACTTCATCTATACTAATGCTTCCAGTCTTTCTCAGATCATTCAAAAAGCATGATATGGTTTTCACAAAAGGACA---------TTCATCCCATTTGACTAACTGGAATTTCTTTAAGTAAAATTTTACTCCAGCTAATCTTTACCAAATAGCTGAATTAAGTCAAGTTGACACCCTGTT---ATCTACCAGCTCTTCCAGCCCTTTTGCTTGATTGTTTTGTCATTTTGCCTTTTCTCCTCTTCTAGAGTGGGAGTATGGAGATTTACCCTTCTGAAACAGCTGTGTCACATCATGATCCTTGAGGATACCAgttcttaa--ctggctgcacatcaaaatcactgtttccttttaccaatactctagacacactcaagcagacattctggattctgatttaattgacacagagtagggcctgggca--tttttaaagctcctcacatgattctattgtgcCTCATCTATCCTAGCCCTTAAGCAGGACCAAACATTTCTTCTGTCTTAATTATTACTCTCTTAAACTTAGTCCAATTCCTCACAACTGATAGATTTCTACATACTCATCTGCCTTGAATGATGACA i macFas5.chr6 C 0 C 0 s papAnu2.JH683014 10826 1028 + 14956 tttaaaatttgataatctTGAGTCCATGATTATTATGAAAGCCCTCTGTTATCTTTTTACTTCCTTTCACAGTGACTGTTTGTGTTATAAAA----CAATTTCTCAAGACAAATGTCGTAGAAGGTAGATAC-AAAAAATGat-tacatttgtttattcaagCTAATTTCATGTTATGAACAAAATTATGTAATGTCA--TTTCTAAGACCTTTCTGTGATCTATCAATCCACTAGGTTAAATAGCAGAAATCACTTCCAAAACAAATCCTTTTGCAGTCAGCAAAATGAAGCAATTATATGAATAAGTTTTTCCACTTGGCCTATTTTTCTGCCCATGGTTATTAATCAGTCTCACTgactatattttccattttacatcCCCTTTCAGGCACTACTCCAGGTGGCCAAGCATATcacattatgtaaataaaataaaac-aaatcttttCCCATTGAGCAAATGGATATACTTCATCT---CTAATGCTTCCAGTCTTTCTCAGATCATTCAAAAAGCATGATATGGTTTTCATAAAAGGACA---------TTCATCCCATTTGACTAACTGGCATttctttaagtaaaattttactCCAGCTAATCTTTACCAAATAGCTGAATTAAGTCAAGTTGACACCCTGTT---ATCTACCAGCTCTTCCAGCCCTTTTGCTTGATTGTTTTGTCATTttgccttttctcctcttctaaaGTGGGAGTATGGAGATTTACCCTTCTGAAACAGCTGTGTCACATCATGATCCTTGAGGATACCAGTTCTTAA--CTGGCTGCACATCAAAATCACTGTTTCCTTTTACCAATACTCTAGACACACTCAAGCAGACATTctggattctgatttaattgacaCAGAGTAGGGCCTGGGCA--TTTTTAAAGCTCCTCACATGATTCTGTTGTGCCTCATCTATCCTAGCCCTTAAGCAGGACCAAACATTTCTTCTGTCTTAATTATTACTCTCTTAAACTTAGTCCAATTCCTCACAACTGATAGATTTCTACATACTCATCTGCCTTGAATGATGaca i papAnu2.JH683014 C 0 C 0 s chlSab2.chr4 46903184 1027 + 91010382 TTTAAAATTTGATAATCTTGAGTCCATGATTATTATGAAAGCCCTCTTTTATCTTTTTACTTCCTTTCACAGTGACTGTTTGTGTTATAGAA----CAATTTCTCAAGACAAATGTCGTAGAAGGTAGATAC-AAAAAATGAT-TACATTTGTTTATTCAAGCTAATTTCATGTTATGAACAAAATTATGTAATGTCA--TTTCTAAGACCTTTCTGTGATCTATCAATCCACCAGGTTAAATAGCAGAAATCACTTCCAAAACAAATCCTTTTGCAGTCAGCAAAATGAAGCAATTATATGAATAAGTTTTTCCACTTGGCCTATTTTTCTGCCCATGGTTATTAATCAGTCTCACTGACTACATTTTCCATTTTACATCCCCTTTCAGGCACTACTCCAGGTGGCCAAGCATATCACATTATGTAAATAAAATAAAAC-AAATCTTTTCCCATTGAGCAAATGGATATACTTCATCT---CTAATGCTTCCAGTCTTTCTCAGATCATTCAAAAAGCATGATATGGTTTTCATAAAAGGACA---------TTCATCCCATTTGACTAACTGGAATTTCTTTAAGTAAAATTTTACTCCAGCTAATCTTTACCAAATAGTTGAATTAAGTCAAGTTGACACCCTGTT---ATCTACCAGCTCTTCCAGCCCTTTTGCTTGATTGTTTTGTCATTTTGCCTTTTCTCCTCTTCTAAAGTGGGAGTATGGAGACTTACCCTTCTGAAACAGCTGTGTCACATCATGATCCTTGAGGATACCAgttcttaa--ctggctgcacatcaaaatcactgtttccttttaccaatactctagacacactcaagcagaca-tctggattctgatttaattggcacagagtaggtcctgggca--tttttaaagctcctcacatgattctattgtgcCTCATCTATCCTAGCCCTTAAGCAGGACCAAACATTTCTTCTGTCTTAATTATTACTCTCTTAAACTTAGTCCAATTCCTCACAACTGATAGATTTCTACATACTCATCTGCCTTGAATGATGACA i chlSab2.chr4 C 0 C 0 s calJac3.chr2 47250974 1027 - 204313951 TTTAAAATTTGATAATTTTGAGTTCATGATCTTTATGAAAGCCCTCTGTTACCTTTTTACTTCCTTTAACAATAACTGTTTATGTTGTAGAATCATCATTTTCTCAAGACAAATGTCTTAGAAGGTAGATAC-ATAAAGTGGCATACATTTTTTGGTTCAAGCTAATTTCATGTTATGAACAAAAT---GTAATGTCG--TTTCTAAGACCTTTCTGTGATCTATCAATCCACCACGTTAAATAGGAGAAATCACTTCCAAAACAAATCCTTTTGCAGTCAGCAAAATGAAGCAATTACATGAATAAGTTTTTCCACTTGGCCTATTTTTCTGCCCATGGTTATTAATCAGTCTCACTGACTACATTTTCCATTTTACATCCACTTTCAGGCACTATTCCAGGTGGCCAAGCATTTCATATTACATAAATAAAATAAAACAAAATTTTTTTCCATTGAGCAAATGGATATACTTCATCA---CTAATGCTTCCATTCTTTCTCAAATCATTCAAAAAGTATGATACGGTTTCCATAAAAGGACA---------TCCATCCCATTTGACTAACTGGAATTTCTTTAAGTTTAATTTTACTTCAGCTAATCTTTACCAAATAGCTGAATTAATTTAAGTTGACACCCTGCT---ATCTACCAGCTCTTCCAACCCTTTTGCTTGATTGTTTTGTCATTTTGCCTTTTCTT---TTCCAAATTGGAAGTGTGGAGATTGACCCTTCTGAAACAGCTGTAT-GCATCACGATACTTGAGGATATCAGCTCTTAA--TTGGCTGCACATCAAAATCACTGTTTCCTTTTACCAATATTCTAGAAACACTCAAGCAGAGATTCTGgattctgatttaattgacacagagtaaggcctgggcg--tttttaaatctccctacatgattctattatgcCTCATCTATCCTGGCCCTCAAGCAGGACCAAACATTACTTCTGTCTTAATTATTCTTCTCTTAAACTTAGTCCAGTTTCTTACAACTGATAGATTTCTATCTACTGATCTGCCTTGAGTGATGACA i calJac3.chr2 C 0 C 0 s canFam3.chr4 23965509 1028 - 88276631 TTTAAATTTT----ATTCTTAATCCATGACTTCTA-AAAAGTTCCCTGTTACCTTCCTACATCCTTCCATAAGGACTGTTTATGTTCTACAGTAACTATTTTCTCCAGAAAAA--CCTTATAAAGTAGATAC-AAAAAGTGGCGTACAACTTTTGGGTCAAACTAATTTCATGTAATGAACAAAATTGTGTAATATCATTTTTCTCAGACCTTTTTGTGATCTATCAATCCACTGAGTTAAATAGCTGAAATCACTCCCAAAACAAATCCTTTTGCAGTCAGCAAAATGAAGCAATTACATGAATAAGTTTTTCCACTTGGCCTATTTTTCTGCCCATGGTTATTAATCAGTCTCACTGACTACATTTTCCATTTTACATCCACTTTGAGGCACTACTCCAGGTGGCCAAACATTTCACATTACGTAAATAAAATAAAACAAAACCTTTGCCCATTGAGCAAATGGATGTACTTCATAT---CTAACTCTTCCAGCCTCTCTCAAATCATTCAGAAAACACAATATGGTTTCTATAAAAGGATACTCAATATTTTCATTTTATTTGGCTAACTGGAATTTCTTTAAGTGAAATATTACTCCAGCCAATCTTCCCCAGATAGCTGAATTAATTTAAGTTGATGCCCTGTT-TTATCTAATGGCTCCT-GAGATCTTTGTCTTGATTGTTTGTTC---TTGCTTTGTCTC---TTCTGAATTCAAAGTCTGGAGAATGCCCCTTCTGAAACTGCTGTTTTGCATAATGTGACTTTCAGATGACgattcttaacccttgctacacatcataaccactatttctttatactaatactctagacacaatcatgtaga-------gattcagatttaactgggacaaagtggggccagggtaattttttaaaactccaagtgtgattctgttgggcC-CATACATGTTGGCCCTCAAGCAGGGCCAAAT-TTTACTCTATGTTAATGATACTTCTCTTAAATTTAATCCAGGTCCTTACAACCGATAGATTTCTGTAGGTTGATCTGCCCTGAGTGATAACA i canFam3.chr4 I 103 I 3 a score=1010244.000000 s hg38.chr1_KI270765v1_alt 92433 371 + 185285 ATtgatatggtttgg--ctgtgtccacaccc-aatctcatcttgtagctcccataattcccacatgttgtgggaggggcccagtgggagataactgaatcatgaggatgggtctttcctgtgctgttcttgggttagtgagtaagtctcatgagatctgatcatttttaaaatgggagtttccctgcacaagctgtctctttgcctgc-----------------tgccatccatgtaagatgtgacttgctcctctttgtcctccaccatgattgtgaggcctccccacccatgtggaactgtaagtccattaaacctctt--tcttttgtaaattgcccggtctcaggtatgtctttatcagcagcatgaaaacagatgaatacaACAATA s panTro4.chr5 117713588 372 - 182651097 ATTGA-atggtttggctctgtgtccacaccc-aatctcatcttgtagctcccataattcccacatgttgtgggaggggcccagtgggagataattgaatcatgaggatgggtctttcctgtgctgttcttgtgttagtgagtaagtctcatgagatctgatcatttctaaaatggaagcttccctgcacaagctctctctttgcctgc-----------------tgccatccatgtaagatgtaacttgctcctctttgtcctccaccatgattgtaaggcctccccacccatgtggaattgtatgtccattaaacctctt--tcttttgtaaattgcccagtctcaggtatgtctttatcagcagcatgaaaacagatgaatacaACAATA i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48787879 296 + 183952662 ATtgatatggtttggctctgtgtccacaccc-aatctcatcttgtagctcccataattcccacatgttgtgagaggggcccagtgggagataactgaatcatgaggatgggtctttcctgtgctgttcttgtgttagtgagtaagtctcgtgagatctgatcatttttgaaatgggagtttccctacacaagctctctctttgc----------------------------------------------------------------------------------------------aactgtaagtccattaaacctctt--tcttttgtaaattgcccagtgtcaggtatgtctttatcagcagtatgaaaacagatgaatacaACAATA i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54706414 373 + 109391073 ATtgatatggtttggcccagtgtccacaccc-aatctcatcttgtagctcccataattcccacatgttgtgggaggggcccagtgggaggtaatagaatcatgaggttgggtctttcctgtgctgttcttgtgttagtgagtaagtctcatgagatctgatcatttttaaaatgggagtttccctgcacaagctctctctttgcctgc-----------------tgccatacatgtaagatgtgacttgctcctctttgtcctccaccatgattgtgaggcctccccacccatgtggaactgtaagtccattaaatctctt--tcttttgtaaattgcccagtctcaggtaagtctttatcagcagcatgaaaacagatgaatacGACAATA i nomLeu3.chr12 C 0 C 0 s rheMac3.chr6 48561307 374 + 180491593 ATtgatatggtttggctctgtgtccacacccaaatctcatcttgtagctcccataattcccacatgttgtgggaggggcacaatgggagataattgaatcatgaggatgggtctttcccatgctgttcttgtgttagtggataagtctcatgagatctgatcattttaaaaatgggagtttccctgcacaagctctctctttgcctgc-----------------tgccatccatgtaagatgtgacttgctcctccttgtcttctgccatgattgtgagacctccccactcatgtggaactgtaagtccactacacctctt--tcttttctaaattgcctagtctcaggtatggctttatcagcagcatgaacacagatgcatacaACAATA i rheMac3.chr6 C 0 C 0 s macFas5.chr6 49884572 374 + 181584905 ATtgatatggtttggctctgtgtccacacccaaatctcatcttgtagctcccataattcccacatgttgtgggaggggcacaatgggagataattgaatcatgaggatgggtctttcccatgctgttcttgtgttagtggataagtctcatgagatctgatcattttaaaaatgggagtttccctgcacaagctctctctttgcctgc-----------------tgccatccatgtaagatgtgacttgctcctccttgtcttctgccatgattgtgagacctccccactcatgtggagctgtaagtccactacacctctt--tcttttctaaattgcctagtctcaggtatggctttatcagcagcatgaacacagatgcatacaACAATA i macFas5.chr6 C 0 C 0 s papAnu2.JH683014 11854 374 + 14956 attgatatggtttggctctatgtccacacccaaatctcatcttgcagctcccataattcccacatgttgtgggaggggtgcaatgggagataattgaatcatgaggatgggtctttcccatgctgttcttgtgttagtggataagtctcatgagatctgatcattttaaaaatgggagtttccctgcacaagctctctctttgcctgc-----------------tgccatccatgtaagatgtgacttgttcctccttgtcttctgccatgattgtgagacctccccactcatgtggaactgtaagtccactacacctctt--tcttttctaaattgcctagtctcaggtatggctttatcagcagcatgaacacAGATGCATACAACAATA i papAnu2.JH683014 C 0 C 0 s chlSab2.chr4 46904211 374 + 91010382 ATtgatatgggttggctctgtgtccacacccaaatctcatcttgtagctcccataattcccacatgttgtgggaggggcccaatgggagataattgaatcatgaggatgggtctttcccatgctgttcttgtgttagtggataagtctcatgagatctgatcattttaaaaatgggagtttccctgcacaagctctctctttgcctgc-----------------tgccatccatgtaagatgtgacttgctcctccttgtcttctgccatgattgtgagacctccccactcatgtggaactgtaagtccactacacctctt--tcttttctaaattgtctagtctcaggtatggctttatcagcagcatgaacacagatgcatacaACAATA i chlSab2.chr4 C 0 C 0 s calJac3.chr2 47252001 390 - 204313951 A-tgataagatgtggctgtgtgtacatacccaaatctcatcttgtagctttcataattcccacatgttgcgggagggacccagtgggagataactgaatcatgagaatgggtctttcctgtactgttcttgtgatggtgaataagtctcatgagatatgacagtttcgaaaatgagagtttccctgcataagc--tctctttccctgcataagctctctcttacatgcaatccatgtaagatgtgacttgctcctctttaccctccaccattattgtgaggccaccccacccatgtggaactgtaactccattaaacctctttgttttttgtaaattgcccagtctcaggtatgtctttatcagcagtgtgaaaacagacaaatacCAAAATA i calJac3.chr2 C 0 C 0 e canFam3.chr4 23966537 3 - 88276631 I a score=251065.000000 s hg38.chr1_KI270765v1_alt 92804 72 + 185285 CTGTAACAAATCGACTC---ACATCTGTTCTCTTTATAGGAATTGCAGTGCTACAAT-ATTAGTGGCTCTTAATTC s panTro4.chr5 117713960 72 - 182651097 CTGTAACAAATCTACTC---ACATCTGTACTCTTTATAGGAATTGCAGTGCTAAAAC-ATTAGTGGGTCTTAATTC i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48788175 72 + 183952662 CTGTAACAAATCTACTC---ACATCTGTACTCTGTATAGGAATTGCAGTGTTACAAC-ATTAGTGGCTCTTAATTC i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54706787 72 + 109391073 CTGTAACAAATCTACTC---ACATCTGTACTCTTTATAGGAATTGCAGTGCTACAAC-ATTAGTGGCTCTTAATTC i nomLeu3.chr12 C 0 C 0 s rheMac3.chr6 48561681 72 + 180491593 CTGCAACAAATCTACTC---ACATCTGTACTCTTTATAGGAATTGCAGTGCTACAAC-ATTAGTGACTGTTAATTC i rheMac3.chr6 C 0 C 0 s macFas5.chr6 49884946 72 + 181584905 CTGCAACAAATCTACTC---ACATCTGTACTCTTTATAGGAATTGCAGTGCTACAAC-ATTAGTGGCTGTTAATTC i macFas5.chr6 C 0 C 0 s papAnu2.JH683014 12228 72 + 14956 CTGCAACGAATCTACTC---ACATCTGTACTCTTTATAGGAATTGCAGTGCTACAAC-ATTAGTGGCTGTTAATTC i papAnu2.JH683014 C 0 C 0 s chlSab2.chr4 46904585 72 + 91010382 CTGCAACGAATCTACTC---ACATCTGTACTCTTTATAGGAATTGCAGTGCAACAAC-ATTAGTGGCTGTTAATTC i chlSab2.chr4 C 0 C 0 s calJac3.chr2 47252391 72 - 204313951 CTGCAACAAATCTACTC---ACATCTGTACTCTTTGTAGGAATTGCAATGCTACAAC-ATTAGTGGTTCTTAATTC i calJac3.chr2 C 0 C 0 s canFam3.chr4 23966540 76 - 88276631 CTATAACAAATCTACTCACAACATCTATGCCCTTCACAGGAATTCCAGTGTTACAAAGATTAATGGTTCTTAGGCC i canFam3.chr4 I 3 C 0 a score=405259.000000 s hg38.chr1_KI270765v1_alt 92876 143 + 185285 TAAGAGTGTTAAAAAATATTAATGCTTGTCTCACCCCTAAAgtctagggtgtgacctgagtattaggttatttaaaacttttctcaggtaatagacatgtgcagccaaggttgagaaccactCTATAGGGCCAAGATATGTAA s panTro4.chr5 117714032 143 - 182651097 TAAgagagttaaaaaatattaatgcttgtcccacccctaaagtctagggtgtgacctgagcattaggttattttaaacttttctcaggtaataaacatgtgcagccaaggtttagaaccactCTATAGGGCCAATATATGTAA i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48788247 143 + 183952662 TAAgagagttaaaaaatattaatgcttgtcccacccctaaagtctagggtgtgacctgagcattaggttatttaaaacttttctcaggtaataaacatgtgcagccaaggttgagaaccactCTATAGGGCCAAGATATGTAA i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54706859 143 + 109391073 TAAGAGCGTTAAAAAATATTAATGCTTGTCTCACCCCTAAAgtctagggtgtgacctgagcattaggttatttaaaacttttctcaggtaatagatatgtgcagccaaggttgagaaccactCTATAGGGCCAAGATATGTAA i nomLeu3.chr12 C 0 C 0 s rheMac3.chr6 48561753 143 + 180491593 TAAgagtgttaaaaaatattaatgcttgtcccacccctaaagtctagggtgtgacctgagcattaggttatttaaaacttttctcaggtaatagacttgtgcagtcaaggttgagaaccactCTACAGGGCCAAGATATGTAA i rheMac3.chr6 C 0 C 0 s macFas5.chr6 49885018 143 + 181584905 TAAgagtgttaaaaaatattaatgcttgtcccacccctaaagtctagggtgtgacctgagcattaggttatttaaaacttttctcaggtaatagacttgtgcagtcaaggttgagaaccactCTACAGGGCCAAGATATGTAA i macFas5.chr6 C 0 C 0 s papAnu2.JH683014 12300 143 + 14956 TAAGagtgttaaaaaatattaatgcttGTCCCACCCCTAAAGTCTAGGGAGTGACCTGAGCATTAggttatttaaaacttttctcaGGTAATAGACTTGTGCagtcaaggttgagaaccactctACAGGGCCAAGATATGTAA i papAnu2.JH683014 C 0 C 0 s calJac3.chr2 47252463 143 - 204313951 TAAGAGTGTTAAAAAATGTTAATGCTTATCCTACCCCTAAAgtctagggtgtgacctgagcattaggatatttaaaacttttctcatgtgatagacacatgcaaccaaggttgagaatcactCCATAGGGCCAAGATATGTAA i calJac3.chr2 C 0 C 0 s canFam3.chr4 23966616 143 - 88276631 TGAGATCTTTAAATAATAGTAGTGTTTGTACTGCTCCCAAAgtctgacgtgtgaactgggcattgaaatactttaaatttttcccaaatgataccaatgtgcagccaaggttgagaaccacCATATAGGGCCAAGATACTTAA i canFam3.chr4 C 0 C 0 e chlSab2.chr4 46904657 0 + 91010382 C a score=462316.000000 s hg38.chr1_KI270765v1_alt 93019 230 + 185285 GAAAATTCAAGTCCTttagctgggcgtggtggcacacagctgtagccccaggtactctggaagctgaggtgggaggattgcttgagcccaggacagagaggctgcattaagctatgatcacatcactgcactctagcctgggtgacaaagtgagatcatgtcaaaaa---------------aaaaagaaaaagaaagga------------gaaagaaaggaagaa--gaggaaggaaggaaggaaggaaggaaggaa s panTro4.chr5 117714175 223 - 182651097 GAAAATTCAAATCCTttagctgggcatggtggcacacacctgtagccccaggtactctggaagctgaggtgggaggatcgcttgagcccaggagagagaggctgcattaagctatgatcacatcactgcactctagcctgggtgacaaagcgagatcatgt---aaa---------------aaaaaaaaaaaaaaagg----------------agaaaggaagaa--gaggaaggaaggaaggaaagaaggaaggaa i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48788390 223 + 183952662 GAAAATTCAAGTCCTttagctgggcatggtggcacacacctgtagccccacgtactctggaagctgaggtgggaggattgcttgagcccaggagagagaggctgcattaagctatgatcacatcactgcactctagcctgggtgacaaagtgagatcatgtcaaaaa---------------aaaaaaaaggagaa-------------------agaaaggaagaa--gaggaaggaaggaaggaagggaggaaggga i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54707002 244 + 109391073 GAAAATTCAAGTCCTttagctgggcatggtggcacgcacctgtagccccaggtactctggaagctggggtgggaggattgcttgagcccaggagagagaggctgcattaagctatgatcacatcactgcactctagcctgggtgacaaagtgagatcatgtcaaaaa---------------aaaaagaaaggagaaagaaaGGCAGAAGaggaaagaaggaaggaagggaggaaagaaggaaggaaggaaggaaggaa i nomLeu3.chr12 C 0 C 0 s rheMac3.chr6 48561896 226 + 180491593 GAAAATTCAAGTCATttagcttggcatggtggcatgcacctggagccccagggactctggaagctgaggtgggaggattgcttgagcccaggagagagatgctgca-taagctatgatcacatcactgcactccagcctgggtgacaaagtgagatcatgtcaaaaannnnnnnnnnnnnnn------------------------------gaaagaaaGGAAGAA--aaggaaggaattaaggaaggaaggaaggaa i rheMac3.chr6 C 0 I 48 s macFas5.chr6 49885161 234 + 181584905 GAAAATTCAAGTCATttagcttggcatggtggcatgcacctggagccccaggtactctggaagctgaggtgggaggattgcttgagcccagaagagagatgctgca-taagctatgatcacatcactgcactccagcctgggtgacaaagtgagatcatgtcaaaaa---------------aaaaaaaaaaaaaaaagaaaGGA-------GAAAGAaaggaagaa--aaggaaggaattaaggaaggaaggaaggaa i macFas5.chr6 C 0 C 0 s papAnu2.JH683014 12443 233 + 14956 GAAAATTCAAGTCatttagcttggcatggtggcatgcacctggagcCCCAggtactctggaagctgaggtgggaggattgcttgagcccaggagagagaTGCTGCa-taagctatgatcacatcactgcactccagcctgggtgacaaagtgagatcatgtcaaaaa----------------aaaaaaaaaaaaaaagaaagga-------gaaagaaaggaagaa--aaggaaggaattaaggaaggaaggaaggaa i papAnu2.JH683014 C 0 C 0 s calJac3.chr2 47252606 228 - 204313951 GAAAATTCAAGTTCTttagctgagcatggtggcgtgcgcctgtagccttagctactccagaggctgaggtgggaggattgcttgcacccagaagagtgaagctgcaataagctatgctcggaccactgcactccagcctgggtgacagagtgagaccatgtcaaaaa---------------aaaaaataaaaCAGGA--------------AAaagaaaggaagta--aagaaagaaagagaggaaggaaggaaggaa i calJac3.chr2 C 0 C 0 e chlSab2.chr4 46904657 0 + 91010382 C e canFam3.chr4 23966759 0 - 88276631 C a score=14894.000000 s hg38.chr1_KI270765v1_alt 93249 48 + 185285 aaga-----------------------------------------agaaagaaagaa---------gaaagaaaggaacaaagaa--agaaagaaag----------------aag s panTro4.chr5 117714398 58 - 182651097 gggagg--------------------------------gagagagagagagaaagaa----------agagaaagaaagaaagaaagagaaagaaag----------------aag i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48788613 114 + 183952662 ggaagggagggagagagagagagagagagagggagagagagagagagagagaaagaaagaaagaaagaaagaaaggaagaaagaa--agaaagaaagaagagaaagaaagagaaag i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54707246 60 + 109391073 ggaaggaagg----------------------------aaggaaggaaggaaaagaa---------aaaggaaagaaagaaagaaaaagaaagaaag------------------- i nomLeu3.chr12 C 0 C 0 s macFas5.chr6 49885395 45 + 181584905 ----------------------------------------gaaagggagggaggaag---------ggaggggagaaagaaagaa--agaaagaaA-------------------- i macFas5.chr6 C 0 C 0 s papAnu2.JH683014 12676 45 + 14956 ----------------------------------------ggaaggaaggaaggaag---------gaaggaaggaaggaaggaa--gaaagggag-------------------- i papAnu2.JH683014 C 0 C 0 s calJac3.chr2 47252834 48 - 204313951 ------------------------------------ggaaggaaggaaggaaggaag---------gaaggaaggaaggaaggaa--ggaaggaa--------------------- i calJac3.chr2 C 0 C 0 e chlSab2.chr4 46904657 0 + 91010382 C e rheMac3.chr6 48562122 48 + 180491593 I e canFam3.chr4 23966759 0 - 88276631 C a score=2726.000000 s hg38.chr1_KI270765v1_alt 93297 4 + 185285 agaa s panTro4.chr5 117714456 4 - 182651097 agaa i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48788727 4 + 183952662 agaa i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54707306 2 + 109391073 --aa i nomLeu3.chr12 C 0 C 0 s calJac3.chr2 47252882 4 - 204313951 agaa i calJac3.chr2 C 0 C 0 e chlSab2.chr4 46904657 0 + 91010382 C e rheMac3.chr6 48562122 48 + 180491593 I e canFam3.chr4 23966759 0 - 88276631 C e papAnu2.JH683014 12721 0 + 14956 C e macFas5.chr6 49885440 0 + 181584905 C a score=20773.000000 s hg38.chr1_KI270765v1_alt 93301 35 + 185285 aaagagagagaggaagaaagaaagagagaaa----gaaa s panTro4.chr5 117714460 39 - 182651097 aatgagagagaggaaaaaagaaagagagaaagaaggaaa i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48788731 39 + 183952662 aataagagagaggaagaaagaaagagagaaagaaagaaa i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54707308 39 + 109391073 agaaagaaaaaagaagagaaaaagagaaagaggaagaaa i nomLeu3.chr12 C 0 C 0 s papAnu2.JH683014 12721 36 + 14956 ---ggaggaagggaggggagaaagaaagaaagaaagaaa i papAnu2.JH683014 C 0 C 0 e calJac3.chr2 47252886 0 - 204313951 C e chlSab2.chr4 46904657 0 + 91010382 C e rheMac3.chr6 48562122 48 + 180491593 I e canFam3.chr4 23966759 0 - 88276631 C e macFas5.chr6 49885440 0 + 181584905 C a score=33648.000000 s hg38.chr1_KI270765v1_alt 93336 103 + 185285 gaaaagaaaaaggaaggaaagaaaggaagaaag-------aaagaaaaag-----------------agagaaagaagaaag-----------------aagaaaaggaaagaaagaaaga--gagagagaaagaagga---aaagaac------------------------------------------ s panTro4.chr5 117714499 185 - 182651097 gaaaagaaaaaggaaggaaggaaaggaagaaagaaa----aaagagaaagaagaaagaagaaaataaagagaaagaagagagaaagaaagaaacagagaaagaaaaagaaagaaagaaaga--aagaaagaaagaaagaaagaaagaagaaagaaagaagaaagaaagaaagaaagaaggaaaaggaaaga i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48788770 147 + 183952662 gaaaagaaaaaggaaggaaagcaagaaagaaaaaaa---gaaagaaaaagaagaaagaagaaaataaagagaaggaaggaaggaaggaagaaa------gaaagaaagaaagaaagaagga--aagaaagaaagaagga---aaagaag------------------------------gaaaaggaaaga i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54707347 126 + 109391073 gaaagaaaaaaggaaagaaaggaagaaagaaaaaagaaagaaaggaaaag-----------------agagaaggaagaaagaaagaaagaaa------gaacgaacgaaagaaagaaagaggaagaaagaaagaagga---aaagaaa---------------------------------------aga i nomLeu3.chr12 C 0 C 0 e calJac3.chr2 47252886 0 - 204313951 C e chlSab2.chr4 46904657 0 + 91010382 C e rheMac3.chr6 48562122 48 + 180491593 I e canFam3.chr4 23966759 0 - 88276631 C e papAnu2.JH683014 12757 0 + 14956 C e macFas5.chr6 49885440 0 + 181584905 C a score=107084.000000 s hg38.chr1_KI270765v1_alt 93439 105 + 185285 gaaAATTCAAGTCCTGCCTTGTAAAATGCAGTACTCCATTTTCCCAAAGAGATCCCAAGGGAAACTTAACTACAGGATAAAGACAGACAAAAGGACATAAATTAC s panTro4.chr5 117714684 105 - 182651097 gaaaATTGAAGTCCTGCCTTGTCAAATGTACTACTCCATTTTCCCTAAGGGATCCCAAGGGAAACTTAACTACAGGATAAAGACAGACAAAAGGACATAAATTAC i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48788917 105 + 183952662 gaaaaTTGAAGTCCTGCCTCGTCAAATGCAGTACTCCATTTTCCCAAAGGGATCCCAAGGGAAACTTAACTACAGGATAAAGACAGACAAAAGGACATAAATTAC i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54707473 105 + 109391073 gaaaATTCAAGTCCTGCCTTGTGAAATGCAGTACTCCATTTTCCCAAAGGGATCCCAAGGGAAACTTAACTACAAGATAAAGACAGACAAAAGGACATAAATTAC i nomLeu3.chr12 C 0 C 0 s calJac3.chr2 47252886 105 - 204313951 ggaaATTCAAGTCCTGCCTTGTCAAATGCAGTACTCCACTTTCCCAAAGGGATCCCAAGGGAAACTTAGCCACAGGATAATGACAAACAAAAGGACATAAATTGC i calJac3.chr2 C 0 C 0 s canFam3.chr4 23966759 86 - 88276631 GACAATCCAATTCCTGCCCTGTCAAATGCAGTATCCCTCTTTCCCAAAGAGATCCCCAGGGA----TAAC---------------AACCACAGGAAATAATCCAC i canFam3.chr4 C 0 C 0 e chlSab2.chr4 46904657 0 + 91010382 C e rheMac3.chr6 48562122 48 + 180491593 I e papAnu2.JH683014 12757 0 + 14956 C e macFas5.chr6 49885440 0 + 181584905 C a score=1911.000000 s hg38.chr1_KI270765v1_alt 93544 1 + 185285 A s panTro4.chr5 117714789 1 - 182651097 A i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48789022 1 + 183952662 A i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54707578 1 + 109391073 A i nomLeu3.chr12 C 0 C 0 s rheMac3.chr6 48562170 1 + 180491593 A i rheMac3.chr6 I 48 C 0 s calJac3.chr2 47252991 1 - 204313951 A i calJac3.chr2 C 0 C 0 s canFam3.chr4 23966845 1 - 88276631 A i canFam3.chr4 C 0 C 0 e chlSab2.chr4 46904657 0 + 91010382 C e papAnu2.JH683014 12757 0 + 14956 C e macFas5.chr6 49885440 0 + 181584905 C a score=1169619.000000 s hg38.chr1_KI270765v1_alt 93545 454 + 185285 ACTACTCTAGGTTCACATATTATTTTGTTTCTGAAA--TGGGTTTTAAAATATCTATGTCAGAGTTCATTTCTAGAACT-TTATCTCTAGAAAACATATTTTCACTTCTCAATACAGGAAAATGGAGATTG----------GAAAAATGAGTTTGGAAAATGATTTCCATGCTTATCTCTCAGCTTCTTTTTTCAACTTCCC-TTTTTCATCTCCGTATCTTCACTGATACCTAGGAATCTCTGTTACATCACAGTCTTCAAGAGCTTTGCTCACAGCGAATTAGTTAAGA------CATTAGCTTTCAAAAGTATATGATATTCTCTCACAAGCAT-----TTGTCTACTTTTAATAGGGCAAGCTACGTAAAGATGTTAAATCTCATTCCAGAAATACCACATCTATTCTACCTATTTATGAGAACAGTC--GTCTCTAGACCAAGATAGAAATTCATAGTTAGGAAATAAATCCCTGT s panTro4.chr5 117714790 457 - 182651097 ACAACTCTAGGTGCACATATTATTTTGTTTCTGAAA--TTGGTTTTAAAATATCTATGTCAGAGTTCATTTCTAGAACT-TTATCTCTAGAAAACATATTTTCACTTCTCAATACAGGAAAATGGAGATTG----------GAAAAATGAGGTTGGAAAATGATTTCCATGCTTATCTCTCAGCTTCTTTTTTCAACTTCCCTTTTTTCATCTCCATATCTTCACTGATACCTAAGAATCTCTGTTACATCACAGTCTTCAAGAGCTTTGATCGCAGCGAATTAGTTAAGA------CATTAGCTTTCAAAAGCATATGATATTCTCTCACAAGCAT-----GTGTCTACTTTTAATAGGGCAAGCTATGTAAAGATTTTAAATCTCATTCCAGATATACCACATCTACTCTACCTATTTATGAGAACAGTCATGTCTCTAGACCAAGATAGAAATTCATAGTTAGGAAATAAATCCCTGT i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48789023 457 + 183952662 ACTACTCTAGGTGCACATATTATTTTGTTTCTGAAA--TTGGTTTTAAAATATCTATGTCAGAGTTCATTTCTAGAACT-TTATCTCTAGAAAACATATTTTCACTTCTCAATACAGGAAAATGGAGATTG----------GAAAAATGAGGTTGGAAAATGATTTCCATGATTATCTCTCAGCTTCTTTTTTCAACTTCCCTTTTTTCATCTCCGTATCTTCACTGATACCTAGGAATCTCTGTTACATCACAGTCTTCAAGAGCTTTGCTCGCAGCAAATTAGTGAAGA------CATTAGCTTTCAAAATTATATGATATTCTCTCACAAGCAA-----GTGTCTACTTTTAATAGGGAAAGCTATGTAAAGATTTTAAATCTCATTCCAGAAATACCACATCTACTCTACCTATTTATGAGAACAGTCATGTCTCTAGACCAAGATAGAAATTCATAGTCAGGAAATAAATCCCTGT i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54707579 457 + 109391073 ACTACTCTAGGTGCACATATTATTTTGTTTCTGAAA--TTGGTTTTAAAATATCTATGTCAGAGTTCATTTCTAGAACT-TTATCTCTAGAAAACATATTTTCACTTCTCAATACAggaaaatggagattg----------gaaaaatgaggttggaaaatgATTTCCATGCTTACCTCTCAGCTTCTTTTTTCAACTTCCCTTTTTTCATCTCCATATCTTCACTGACACATAGGAATCTCTGTTACATCACAGTCTTCAAGAGCTTTGCTCGCAGCGAATTAGTTAAGA------CATTAGCTTTCAAAAGTATATGATATTCTCTCACATGCAT-----GTGTCTACTTTTAATAGGGCAAGCTATGCAAAGATTTTAAATCTCATTCCAGAAATTCCACATCTACTCTACCTATTTATGAGAACAGTCATGTCTCTAGACCAAGAGAGAAATTCATAGTTAGGAAATAAATCCCTGT i nomLeu3.chr12 C 0 C 0 s rheMac3.chr6 48562171 465 + 180491593 ACTATTCTAGGTGCACATATTATTTTGTTTCTGAAA--TTGGTTTTAAAATATCTATGTCAGAGTTCATTTCTAGAACT-TTATCTCTAGAAAACATATGTTCACTTCTCAATATAGGAAAATGGAGATTGGAAACATGAAGAAAAATGATGTTGGAAAATGATTTCCATGCTTATCTCTCAACTTCTTTTTTCAACTTCCCTTTTGTCATCTCCATAACTTCACTGATACCTAGGAATCTCTGTTACAtcacagtcttcaagagctttgctagcagcaaattaattaaga------cattagctttcaaaagtatatgatattctctcacaaac-------gtgtctacttttaatagggCAAGCTATGTAAAGATTTTAAATCTCATTCCAGAAATACCACATCTATTCTACCTACTTATGAAGACAGTCAAGTCTCTAGACCAAGATAGAAATTCATAGTTTGGAAATAAATCCCTGT i rheMac3.chr6 C 0 C 0 s macFas5.chr6 49885440 465 + 181584905 ACTATTCTAGGTGCACATATTATTTTGTTTCTGAAA--TTGGTTTTAAAATATCTATGTCAGAGTTCATTTCTAGAACT-TTATCTCTAGAAAACATATGTTCATTTCTCAATATAggaaaatggagattggaaacatgaagaaaaatgacgttggaaaatgATTTCCATGCTTATCTCTCAACTTCTTTTTTCAACTTCCCTTTTGTCATCTCCATAACTTCACTGATACCTAGGAATCTCTGTTACATCACAGTCTTCAAGAGCTTTGCTAGCAGCAAATTAATTAAGA------CATTAGCTTTCAAAAGTATATGATATTCTCTCACAAAC-------GTGTCTACTTTTAATAGGGCAAACTATGTAAAGATTTTAAATCTCATTCCAGAAATACCACATCTATTCTACCTACTTATGAAGACAGTCAAGTCTCTAGAACAAGATAGAAATTCATAGTTTGGAAATAAATCCCTGT i macFas5.chr6 C 0 C 0 s papAnu2.JH683014 12757 463 + 14956 actattctaGGTGcacatattattttgtttctgaaa--ttggttttaaaatatctatgtCAGAGTTCATTTCTAGAACT-TTATCTCTAGAAAAC--ATGTTCACTTCTCAATATAGGAAAATGGAGattggaaaaatgaagaaaaatgacgTTGGAAAATGATTTCCATGCTTATCTCTCAACTTCTTTTTTCAACTTCCCTTTTGTCATCTCCATAACTTCACTGATACCTAGGAATCTCTGTTACATCACAGTCTTCAAGAGCTTTGCTCGCAGCAAATTAATTAAGA------CATTAGCTTTCAAAAGTATATGATATTCTCTCACAAAC-------GTGTCTACTTTTAATAGGGCAAGCTATGTAAAGATTTTAAGTCTCATTCCAGAAATACCACATCTATTCTACCTACTTATGAGGACAGTCAAGTCTCTAGACCAAGATAGAAATTCATAGTTTGGAAATAAATCCCTGT i papAnu2.JH683014 C 0 C 0 s calJac3.chr2 47252992 461 - 204313951 ACTACTTTAGGTGCACATATCATTTTGTTTTTGAAA--TTGCTTTTAAAATATTTATGTCAGCATTCATTTCTAGAACTATTATCTCTAGAAAACATATTTTGACTTCCCAATACAAGAAAATGTAGATTA----------GAAAAATGAGGTTGTAAAATGATTTCCATGGTTATCTTTCAGCTTCTTTTTTCAACTTCCCTTTTTTCATCTCCATGTCTTCACTGATGCCTAGGAA--TCTGTTATATTACAGTCTTCAAGAACTTTGCTCGCAGAGAGTTAGTTAGGACTCTCTCATTCGCTTTC-AATGTATATGATACTCTCTCACAAGCAT-----CTGTCTACTTTTAATAGGGCAAGCTATGTAAAGATTTTAAATCTCATTCCAGAAATACCACATCTACTCTACCTATTTATGAGAACAGTCATGTTTCTGGACCAAGATAGAAATTTATAGTTAGGAAATAAATCCCTGT i calJac3.chr2 C 0 C 0 s canFam3.chr4 23966846 415 - 88276631 ACTATTATA--TGTACATACTCTTCTGTTTGTTAAACTTTGGCTTGAAAATATTTGTGTTAGAGTTTATTTCTAGAATT-CTATACAGGGGCAGTCT-----------------TAGGAA---------------------AAATAGTGAGACTAGAAAATATTTTCGATGGCCTTCTCTAAGCTTCTTTTATCAATTTTCCTCATTTCTC-----------------TACCTGGGACcctctcatatgtcacaatctctgagggctttgctctcagctaattagctaaga------cattagatttcgaaggcatgagatgtttactcacaaacatgtagagtatttctatttaataggacaacctatggaaaGATTTTAATTCT--TTCCAGGAACACTCTATCTTCTCACCCAATTCATTAGAATAATCAGGTTTCTAGACCAAGACTGAAATTCACAGTTAAAAAGTAAATTCCTGT i canFam3.chr4 C 0 I 424 e chlSab2.chr4 46904657 0 + 91010382 C a score=303211.000000 s hg38.chr1_KI270765v1_alt 93999 123 + 185285 AGGGTTTTTCCACAgtcccaatatgtcccctactgtcccgattttagcaacaaaaatcccccatccag-aaaatccttcattcctgagtaagttgaaagattggtcaccctaTTTCTATCTGTG s panTro4.chr5 117715247 123 - 182651097 AGGGTTTTTCCACAgtcccaatatgtcccctactgtcctgattttagcaacaaaaattccccatccag-aaaatccttcattcctgagtaagttgaaagattggtcaccctaTTTCTATCTGTG i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48789480 123 + 183952662 AGGGTTTTTCCACAgtcccaatatgtcccctactgtcctgattttagcaataaaaattccccatccag-aaaatccttcattcctgagtaagttgaaagattggtcaccctaTTTCTATCTGTG i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54708036 124 + 109391073 AGGGTTTTTCCACAgtcccaatatgtcccctactgtcctgattttagcaacaaaaatttcccatccagaaaaatccttcattcctgagtaagttgaaagatgggtcaccctaTTTCTATCTGTG i nomLeu3.chr12 C 0 C 0 s rheMac3.chr6 48562636 123 + 180491593 AGGGCTTTTCCACAGTCCCAATATGtgccctactgtcctgattttagcaacaaaaattctccatccag-aaaatccttcattcctgagtaaattgaaagattggtcaccctaTTTCTATCTGTG i rheMac3.chr6 C 0 C 0 s macFas5.chr6 49885905 123 + 181584905 AGGGCTTTTCCACAgtcccaatatgtcccctactgtcctgattttagcaacaaaaattctccatccag-aaaatccttcattcctgagtaaattgaaagattggtcaccctaTTTCTATCTGTG i macFas5.chr6 C 0 C 0 s papAnu2.JH683014 13220 123 + 14956 AGGGCTTTTCCACAGTCCCAATATGTCCCCTACTGTCCTGATTTTAGCAACAAAAATTCTCCATCCAG-AAAATCCTTCATTCCTGAGTAAATTGAAAGATTGATCACACTATTTCTATCTGTG i papAnu2.JH683014 C 0 C 0 s calJac3.chr2 47253453 123 - 204313951 AGGGCTTTTCCACAgtcccaatatgtcccctactgtcctgattttaacaacaaaagtcccccatccag-aaaatccttcattcctgggtaagttggaagattggtcaccctaTTTCTGTCTGTG i calJac3.chr2 C 0 C 0 e chlSab2.chr4 46904657 0 + 91010382 C e canFam3.chr4 23967261 424 - 88276631 I a score=1473059.000000 s hg38.chr1_KI270765v1_alt 94122 618 + 185285 TCTCTTTCTTTCATAATTGGCTCATA----------------ATCATAGCAGTC-------------ACAATTTTGAAA-------------------------AATGTTATTTTACTGAATTACTCATTGCTGTTTTCTCATTTTTTAAATAATAAACACTTATTAAGAAACATTGGAAATATACCAAAAATAGTAAACAATAAAACAGAAACCATTGGCAGAAATAGTCACTATTAAAATCTTAATATACTCCCTTCCAATGTTGTTT--------------CTGTTAATG-C----AAATTAAAAAATCAGAGATTCGCCTCTGTGAA---------------------------------------CTAGATCTCTTTTTACCTTTAGATATTATTTGACAAATACATAGCTCAATCATCTATCCAAACTTCTCTTTTACAGACTCCATGCCAATTAACCTTCTCCTATGAAACTATTATTTCTTCACATAGGATAAATATGGTTATTGACACACAAACTTTCTTAGTTACACTGCAATCCAGTTGTGCGTTCCT------AAATTTATACCAATTGGATTTAGAATGATC-----------------ATTACTAAAGAGGCTTGGCCTTATCTCTTGCAATTTGCTTCTTCCTTCTTAAATTCAATTCTTGTAATGTAACTA-----TAATTTGGGGGTATCTTTTTGCCTCATATTCAAATTCTCTTTCAAA-CTGAGGTACATTTCTGTATT s panTro4.chr5 117715370 618 - 182651097 TCTCTTTCTTTCATAATTGGCTCATA----------------ATCATAGCAGTC-------------ACAATTTTGAAA-------------------------AATTTTATTTTACTGAATTACTCATTGCTGttttctcattttgtaaataataaacacttcttaagaaacattggaaatataccgaaaatagtaaacaataaaacagaaaccattggcagaaacagtcactattaaaatcttactatactcccttccaatgttattt--------------ctgtTAATG-C----AAATTTAAAAATCAGAGATTTGCCTCTGTGAA---------------------------------------CTAGATTTCTTTTTACCTTTAGATATTATTTGACAAATATATAGCTCAATCATCTATCCAAACTTCTCTTTTACAGACTCCATGCCAATTAACCTTCTCCTATGAAACTATCATCTCTTCACATAGGATAAATATGGTTATTGACACACAAGCTTTCTTAGTTACATTGCGATCCAGATGTGCATCCCT------AAATTTATACCACTTGGATTTAGAACGATC-----------------ATTAATAAAGAGGCTTGGTCTTATCTCTTGCAATTTGCTTCTTCCTTCTTAAATTCAGTTCTTGTAATGTAACTA-----TAATTTGGCGGCATCTTTTTGCCTCATATTCAAATTCTCTTTCAAA-CTGAGGTACATTTCTATATT i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48789603 618 + 183952662 TCTCTTTCTTTCATAATTGGCTCATA----------------ATCATAGCAGTC-------------ACAATTTTGAAA-------------------------TATTTTATTTTACTGAATTAGTCATTGCTGttttctcattttttaaataataaacacttcttaagaagcactggaaatataccaaaaatagtaaacaataaaacagaaaccattggcagaaacagccactattaaaatcttaatatactcccttccaatgttattt--------------ctgtTAATG-C----AAATTAAAAAATCAGAGATTTGCCTCTGTGAA---------------------------------------CTAGATCTCTTTTTACCTTTAGATATTATTTGACAAATATATAGCTCAATCATCTATCCAAACTTCTCTTTTACAGACTCCATGCCAGTTAACCTTCTCCTATGAAACTATCATTTCTTCACATAGGATAAATATGGTTATTGACACACAAGCTTTCTTAGTTACATTGCAATCCAGTTGTGCGTCCCT------AAATTTACAACAGTTGGATTTAGAATGATC-----------------ATTACTAAAGAGGCTTGGTCTTATCTCTTGCAATTTTCTTCTTCCTTCTTAAATTCAATTCTTGTAATGTAACTA-----TAATTTGGGGATATCTTTTTGCCTCATATTCAAATTGTCTTTCAAA-CTGAGGTACATTTCTGTATT i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54708160 617 + 109391073 TCTCTTTCTTTCATAATTGGCTCATA----------------ATTATAGCAGTC-------------ACAATTTTGAAA-------------------------AATTTTATTTTACTGAATTACTCATTGCTGttttctcatttt-taaataataaacacttattaagaaacattggaaatataccgaaaatagtaaacaataaaacagaaaccgttggcagaaatagtcattattaaaatcttaatatactcccttccagtgttgttt--------------ctgtTAATG-C----AAATTAAAAAATCAGAGATTCACCTCTGTGAA---------------------------------------CTAGATCTCTTTTTACCTTTAGATATTGTTTGACAAATATATAGCTCAATCATCTATCCAAACTTCTCTTTTACAGACTCCATGCCAATTAACCTTCTCCTATGAAACTATTATTTCTTCACTTAGGATAAATATGGTTATTGACACACAAGCTTTCTTAGTTACATTGCAAACCAGTTGTGCGTCCCT------AAATTTATACCAGTTGGATTTAGAATGATC-----------------ATTACTAAAGAGGCTTGGTCTTATCTCTTGCAATTTGCTTCTTCCTTCTTAAATTCAATTCTTGTAATGTAACTA-----TAATTTGGGGGTATATTTTTGCCTCATATTCAAATTCTTTTTCAAA-CTGAGGTACATTTCTATATC i nomLeu3.chr12 C 0 C 0 s rheMac3.chr6 48562759 622 + 180491593 TGTCTTTCTTTCATAATTGGCTCATA----------------ATCATAGCAGTC-------------ACAATTTTGAAA-------------------------AATTTTATTTTACTGAATTCCTCATTGCTATTTTCTCatttt-taaataataaaaacttattaataaaCATTGTAAATATACCGAAAAGAGTAAACAATAAAACAGTAACCATTGGCAGAAATAGTCACTATTAAAATCTTAATACATTCCCTTCCAATGTTTTTT--------------CTGTTAATC-Caaaaaaaaaaaaaaaaaaaaaa-----------aaaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAG----------------------TAT----------TATAGCTCAATCATCTATTCAAACTTCTCTTTTACAGACTCCCTGCCAATTAACCTTCTCCTATGAAACTATCATGTCTTCACATAGGATAAATATGGTTATTGACACACAAGCTTTCTTAGTTACGTTGCAATCCAGTTGTGCGTCCCT------AAATTTATGCCAGTTGGATTTCGAATGATC-----------------ATTACTAAAGAGACTTGGTCTTATCTCTTGCAATTTGCTTCTTCCTTCTTAAATTCAGTTCTTGTAATGTAACTATACATTACTTTGGGGGTATCTTTTTGCCTCATATTCAAATTATCTTTCAAA-TAGCGGTACATTTCTATATT i rheMac3.chr6 C 0 I 69 s macFas5.chr6 49886028 626 + 181584905 TGTCTTTCTTTCATAATTGGCTCATA----------------ATCATAGCAGTC-------------ACAATTTTGAAA-------------------------AATTTTATTTTACTGAATTCCTCATTGCTATTTTCTCATTTT-TAAATAATAAAAACTTATTAATAAACATTGTAAATATACCGAAAAGAGTAAACAATAAAACAGTAACCATTGGcagaaatagtcactattaaaatcttaatacattcccttccaatgtttttt--------------ctgtTAATC-CAAAAAAAAAAAAAAATCAGAGATTTGCCTCTGTGAA---------------------------------------CTAGATCTCTTTTTATCTTTAGATATTATTTGACAAGTATATAGCTCAATCATCTATTCAAACTTCTCTTTTACAGACTCCCTGCCAATTAACCTTCTCCTATGAAACTATCATGTCTTCACATAGGATAAATATGGTTATTGACACACAAGCTTTCTTAGTTACATTGCAATCCAGTTGTGTGTCCCT------AAATTTATGCCAGTTGGATTTCGAATGATC-----------------ATTACTAAAGAGACTTGGTCTTATGTCTTGCAATTTGCTTCTTCCTTCTTAAATTCAGTTCTTGTAATGTAACTATACATTACTTTGGGGGTATCTTTTTGCCTCATATTCAAATTATCTTTCAAA-TAGAGGTACATTTCTATATT i macFas5.chr6 C 0 C 0 s papAnu2.JH683014 13343 625 + 14956 TGTCTTTCTTTCATAATTGGCTCATA----------------ATCATAGCAgtc-------------acaattttgaaa-------------------------aattttattttactgaattcCTCAttgctattttctcatttt-taaataataaaaacttattaataaacattgtaaatataccgaaaagagtaaacaataaaacAGTAACCATTGGCAGAAATAGTCACTATTAAAATCTTAATACATTCCCTTCCAATGTTTTTT--------------CTgttaatc-c-aaaaaaaaaaaagatcagagatTTGCCTCTGTGAA---------------------------------------CTAGATCTCTTTTTATCTTTAGATATTATTTGACAAGTATGTAGCTCAATCATCTATCCAAACTTCTCTTTTACAGACTCCCTGCCAATTAACCTTCTCCTATGAAACTATCATTTCTTCACATAGGATAAATATGGTTATTGACACACAAGCTTTCTTAGTTACATTGCAATCCAGTTGTGCGTCCCT------AAATTTATACCAGTTGGATTTCGAATGATC-----------------ATTACTAAAGAGGCTTGGTCTTATCTCTTGCAATTTGCTTCTTCCTTCTTAAATTCAGTTCTTGTAATGTAACTATACATTACTTTGGGGGTATCTTTTTGCCTCATATTCAAATTATCTTTCAAA-TAGAGGTACAtttctatatt i papAnu2.JH683014 C 0 C 0 s calJac3.chr2 47253576 599 - 204313951 GCTCTTTCTTTCATAATTAGCTCATA----------------ACCATAGCAGTC-------------ACAGTTTTGAAA-------------------------ATTTTTATTTTACTGAATTAGTCATTGCTGTTTTCT--TTTT-TAAATAATAAATACTTATTAAGAAACATTAGAAATATACAGAAAATAGTAAATAATAAAACAGAAACCATTGGCAGAAATAGTCACTATTAAAATTTTAATATACTCCTTTCCAATGTTTTTT--------------CTGTTAATG-C----AAA---AAAAATCAGAGATTCACATCTGTGAA---------------------------------------CTAGATCTCTTTTTACTTTTAGCCATTCTTTGGCAAATATATAGCTCAATAATCTATGCAAGATTCTCTTTTACAGATTCCATGGCAATTAACCTTCTCCTATGAAACCATCATTTCTTCACATAGGATAAATATGGTTATTGATACACAAGCTTTCTTAGTTACATTGCAATCCAGTTGTGTGTCCCT------AAATCTATAGCTATTGGGTTTAGAATTATC-----------------ATTACTAAAGAGGCTTGGTCTTATCTTTTGGAATTTGCTTCTTCCTTCTTAAAGTCAGTTCT-----TGTAACTA-----TAATTTGGGGGTATCTTTGTGCCTCATATTCAAATTCTCTTTCata-tatatatacaca-------- i calJac3.chr2 C 0 C 0 s canFam3.chr4 23967685 653 - 88276631 tttctgttttttata----gcttatacaatttgtagtgatttgttatagcagcctgagcagactaagacaATGATGAAGGTCATAGTGTTGTGtttttttttttaattttattttaGTGCATTACTCATTGCTGTTTCTGCATTTTAAAAATAATATAAACTTATTAGGAAACATTGGATTTA----GAAAATAATAAAGAATAATACAAAAACCATTGACAG----AGTCACTATTAAAACCTTAACATACTCCCTTTCAATTTTTTCTCCAATAATTGGAACCTATTAATGTC----AAAAGGAAAAATCATAGATTCACTCTTGTGAA---------------------------------------CTGGCTGTC-ACTTGCATATAGACAATGTAGGACAAACATGAAGCTCAA--ATCTAGCCAGACTT----------------------------------CCATTAAGATATTATTTCTTGAGATTGAATAAATATACTTACCAACATACAAGCTTTCTCAGTTAAACTACAAT-CAGTTATGCTTCCCTAACTTCAACTTCACAGCATTTGGATTGTGAATGATCCAGAACATTTCTTGAATAATTCTAAAGATGGTTGATTATTCCTTTTGCAACTTACTTCTTTCTTTTCAAAGTCAGTTCTTGGAACATAACTA-----TAATTTGGTGGTACTTTTTTGTTTCATATTCATATTCTCTCCCAAAGTTTATGTATATT-------- i canFam3.chr4 I 424 C 0 e chlSab2.chr4 46904657 0 + 91010382 C a score=55742.000000 s hg38.chr1_KI270765v1_alt 94740 41 + 185285 TCTGTATTTGTATATTGCATATAATAGTATAGAAAAC----------------------AATA s panTro4.chr5 117715988 41 - 182651097 TCTGTATTTGTATATTGTATATAATAGTATAGAAAAC----------------------AATA i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48790221 41 + 183952662 TCTGTATTTGTATATTGTATATAATAGTATAGAAAAC----------------------AATA i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54708777 41 + 109391073 TCTGTATTTGTATATTGCATGTAATAGTATAGAAAAC----------------------AATA i nomLeu3.chr12 C 0 C 0 s macFas5.chr6 49886654 63 + 181584905 TCTGTATTTCTATATTGTATATAATAGTATAGAAAACTCattattatgattatatcattaata i macFas5.chr6 C 0 I 17 s papAnu2.JH683014 13968 41 + 14956 tctgtatttctatatTGTATATAATAGTATAGAAAAC----------------------AATA i papAnu2.JH683014 C 0 C 0 s calJac3.chr2 47254175 31 - 204313951 aatatatatacatactatatatagta-tattc------------------------------- i calJac3.chr2 C 0 C 0 s canFam3.chr4 23968338 41 - 88276631 TCCATATTTGAATATTGTATGTAAAAATGTGTAGAAC----------------------AATA i canFam3.chr4 C 0 C 0 e chlSab2.chr4 46904657 0 + 91010382 C e rheMac3.chr6 48563381 69 + 180491593 I a score=106857.000000 s hg38.chr1_KI270765v1_alt 94781 62 + 185285 ATGAGAT---TATAGTGTACATAAA---------AGTTTTGAAGTATAATTAAATATTTAATATATA----AATATAT-- s panTro4.chr5 117716029 62 - 182651097 ATGAGAT---TATAGTGTTTGTAGA---------AGTTTTGAAGtataattaaatatttaatatata----aatatat-- i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48790262 62 + 183952662 ATGAGAT---TATAGTGTATGTAGA---------AGTTTTGAAGtataattaaatatttaatatata----aatatat-- i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54708818 62 + 109391073 ATGAGAT---TATAGTGTACATAAA---------AGTTTTGAAGTATAATTAAATATGTAATATATA----AATATAT-- i nomLeu3.chr12 C 0 C 0 s rheMac3.chr6 48563450 58 + 180491593 ATGAGAT---TATAGTGTACATAAA---------AGTGTTGAAGta----taaatatgtaatatata----aatatat-- i rheMac3.chr6 I 69 I 1462 s macFas5.chr6 49886734 58 + 181584905 atgagat---tatAGTGTACATAAA---------AGTGTTGAAGTA----taaatatgtaatatata----aatatat-- i macFas5.chr6 I 17 I 2 s papAnu2.JH683014 14009 58 + 14956 ATGAGAT---TATAGTGTACATAAA---------AGTGTTGaagta----taaatatgtaatatata----aatatat-- i papAnu2.JH683014 C 0 I 2 s calJac3.chr2 47254206 53 - 204313951 acaaata---tatactatatatata-------------------cacaaatatatatatactatata---tagtatat-- i calJac3.chr2 C 0 I 3 s canFam3.chr4 23968379 76 - 88276631 ATGAGATTAATATAGTACATGCAAATTTGTATACTGTTTTAAAAAG----TAAATACTGAatatataaaataatatttat i canFam3.chr4 C 0 C 0 e chlSab2.chr4 46904657 0 + 91010382 C a score=13067.000000 s hg38.chr1_KI270765v1_alt 94843 6 + 185285 TAAATA s panTro4.chr5 117716091 6 - 182651097 taaata i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48790324 6 + 183952662 taaata i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54708880 6 + 109391073 TAAATA i nomLeu3.chr12 C 0 I 445 s macFas5.chr6 49886794 6 + 181584905 taaata i macFas5.chr6 I 2 I 442 s papAnu2.JH683014 14069 6 + 14956 taaata i papAnu2.JH683014 I 2 N 0 s calJac3.chr2 47254262 6 - 204313951 caaata i calJac3.chr2 I 3 I 1024 s canFam3.chr4 23968455 6 - 88276631 aaaata i canFam3.chr4 C 0 I 484 e chlSab2.chr4 46904657 0 + 91010382 C e rheMac3.chr6 48563508 1462 + 180491593 I a score=4011.000000 s hg38.chr1_KI270765v1_alt 94849 2 + 185285 tg s panTro4.chr5 117716097 2 - 182651097 tg i panTro4.chr5 C 0 I 446 s ponAbe2.chr5 48790330 2 + 183952662 tg i ponAbe2.chr5 C 0 I 446 s nomLeu3.chr12 54709331 2 + 109391073 tg i nomLeu3.chr12 I 445 C 0 s macFas5.chr6 49887242 2 + 181584905 tg i macFas5.chr6 I 442 C 0 s calJac3.chr2 47255292 2 - 204313951 tg i calJac3.chr2 I 1024 C 0 s canFam3.chr4 23968945 2 - 88276631 tg i canFam3.chr4 I 484 C 0 e chlSab2.chr4 46904657 0 + 91010382 C e rheMac3.chr6 48563508 1462 + 180491593 I a score=422.000000 s hg38.chr1_KI270765v1_alt 94851 1 + 185285 g s nomLeu3.chr12 54709333 1 + 109391073 a i nomLeu3.chr12 C 0 C 0 s macFas5.chr6 49887244 1 + 181584905 a i macFas5.chr6 C 0 C 0 s calJac3.chr2 47255294 1 - 204313951 a i calJac3.chr2 C 0 C 0 s canFam3.chr4 23968947 1 - 88276631 a i canFam3.chr4 C 0 C 0 e chlSab2.chr4 46904657 0 + 91010382 C e rheMac3.chr6 48563508 1462 + 180491593 I e ponAbe2.chr5 48790332 446 + 183952662 I e panTro4.chr5 117716099 446 - 182651097 I a score=961403.000000 s hg38.chr1_KI270765v1_alt 94852 638 + 185285 gctgctgactcaccaagcctggtttggcttccatcacttgtgtaatcaatcacctgtattaaatcacctctgcttgaaagacgaagaatagtttctgatttataagcaaacactgaAAGctcttctatttcttgtttgc------------taaacaagatttgtcaaagttaa-atattttattttattgaattcactttttgcctctcctacaatgatgatttgcttttcctcctttaacttgttaatgtgatgaattata--catagttttttttttctattgttagaaatccttgcattcatggaacaaacacaattttcatactatatt------ttttatagacttct-----aaacttaatttgctaac----ttttaatttaaaatgtttgccgttaggttcatgaggaaagttggcatgtaattttcctgtcttacacatttctcatataacattggtatcaaggttgtactggcctcat-aaaatgaacgaacaaatggac---cttttttt---attctggagttgtttttataaaatggaaataatccatttcttgaaaacatttgatagaactcaccagtaaaaatgtctgggcctgctggttctcttcttctaagaagaatttggaacttataattaaagctcctttaatgtgttagaaaa s panTro4.chr5 117716545 640 - 182651097 gctgctgactcaccaagcctgatttggcttccatcacttgtgtaatcaatcacctgtattaaatcacctctgcttgaaagaccaagaacagtttctgatttataagcaaacactgaAAGctcttctatttcttgtttgt------------taagcaagatttgtcaaagttaa-atattttattttattgaattcactttttgcctcttctacaatgatgatttgcttttcctcctttaacttgttaatgtgatgaattata--catagattttttt--ctattgttagaaatccttgcattcatggaataaacacaattttcatactatattat-attttttataggtttct-----aaacttaatttgctaac----ttttaatttaaaatgtttgccattaggttcatgaggaaagttggcgtctaattttcttgtcttacacatttctcgtataacattggtatcaagattgtattggcctcat-aaaatgaaccaacaaatggac---cttttttt---attctggagttgttcttataaaatggaaataatccatttcttgaaaatatttgatagaactcaccagtaaaaatgtctgggcctgctggttctcttcttctaagaagaatttggaacttataattaaagctc-tttaatgtgttagaaaa i panTro4.chr5 I 446 C 0 s ponAbe2.chr5 48790778 641 + 183952662 gctgctgactcaccaagcctggtttggcttccatcacttgtgtaatcaatcacctgtattaaatcacctctgcttgaaagaccaagaatagtttctgatttataagcaaacactgaAAGctcttctatttcttgtttgc------------taaacaagaattgtcaaagttaa-atattttattttattgaattcactttttgcctctcctacagtgatgatttgcttttcctcctttaacttgttaatgtgatgaattata--catagattttttt--ctgttgttagaaatccttgcatttatggaataaacacaattttcatactatattat-cttttttatagatttct-----aaacttaatttgctaac----ttttaatttaaaatatttgccattaggttcacgaggaaagttggcgtctaattttcctgtcttacacatttctcatataacattggtatcaaggttgtattggcctcat-aaaatgaactaacaaatggac---cttttttt---attctggagttgtttttataaaatggaaataatccatttcttgaaaatatttgatagaactcaccagtaaaaatgtctgggcctgctggttctcttcttctaagaagaatttggaacttataattaaagctcctttaatgtgttagaaaa i ponAbe2.chr5 I 446 C 0 s nomLeu3.chr12 54709334 641 + 109391073 gctgctgactcaccaagcctggtttggcttccatcacttgtgtaatcaatcacctgtattaaatcaccgctgcttgaaagaccaagaatagtttctgatttataagcaaacactgaAAGctcttctatttcttgtttgc------------taaacaaggtttgtcaaaattaa-atattttattttattgagttcactttttgcctctcctacaatgatgatttgcttttcctcctttaacttgttaatgtgatgaattata--catagattttttt--ctattgttagaaatacttgcattcatggaataaacgcaattttcatactatattat-cttttttatagagttgt-----gagcttaattttctaac----ttttaatttaaaatgtttgccattaggttcatgaggaaagttggcatctaattttcctgtcttacacatttctcgtataacattggtatcaaggttgtataggcctcat-aaaatgaactaacaaatggac---cttttttt---attctggagttgttttcataaaatggaaataatccatttcttgaaaatatttgatagaactcaccagtaaaaatgtctgggcctgatggttctcttcttctaagaagaatttggaacttataattaaagctcctttaatgtgttagagaa i nomLeu3.chr12 C 0 C 0 s macFas5.chr6 49887245 643 + 181584905 gttgctgactcaccaagcctggtttggcttccatcacgtgtgtaatcaatcacctgtattaaatcacctctgcttgaaagaccaagaatagtttctgatttacaagcaaacactgaAAGctcttctatttcttgtttgc------------taaacaagatttgtcaaagttaa-gtattacgttttatcgaatttactttttgcccctcctacaatgatgatttgcttttcctcctttaacttgttaatgtgatgaattaca--catagatttttt---ctgttgttagaaatccttgcattcatggaataaacacaattttcatactatatcat-cttttttatagatttct-----aaacttaatttgctgacttttttttaattcaaaatgtttgcctttaggctcatgaggaaagttggagtctaatttccctgtcttacacatttcttggataacattggtatcaaggttgtatt-gcctcat-aaaatgaactaacaaaaggac---cttgtttt---attctggagttgtttttataaaatggaaataatccatttattgaaaatatttgatagaactctccagtaaaaatgtctgggcctgctggttctcttcttctaagaagaatttggaacttacaattaaagctctttcaatgtgttagaaaa i macFas5.chr6 C 0 C 0 s calJac3.chr2 47255295 639 - 204313951 gttgctgattcaccaagcctggtttggcttccatcacttgtgtaatcaatcacctgtattaaatcacctctgctagaaagaccaagaatagtttctgatttataagcaaacactgaAAActtttctatttcttgtttgc------------taaacaagatttgtcaaagttaacgtattttattttattgaattcactttttgccactcctacaatgacgatttgcttttcctcctgtaacttattaatgtgatgaattaca--aatagattcttt---ctattgatagaaatccttgcattcatgggataaacccaattatcataccatattatatttttttacagatttct-----aaaattaatttgctaat----ttttaacttaaaatgtttgccattaggttcatgaggaaagttggcatataattttcctgtcttacacatttcttgtataacattggtatcaaggttgtattgccctcat-gaagtga------aaatgtactttcttctttt---attctggaatagtttatataagatgaaaataatttatttcttgaaaacatttgatagaactcaccagtaaaaatgtctgggcctgctggttctcttCTTTTAAGAAGAATTTGGAACTTATAATTAAAGCTCTTTTAATGTGTTAGAAAA i calJac3.chr2 C 0 C 0 s canFam3.chr4 23968948 633 - 88276631 gcagctgactcaaaatgcctggtttggctttcataatctgagtaatcaataatctggcttaaatcacctctgcttgaaagaccaaga--agtttctgATGTATAGGTGGGCACTAAAAGctcttctatctctagtttgcaaataataataataataataatttattaaacttaa-ttatttaattttattgaattcactttctgcagctcctgagttgatgatttgcttttcctcctttaacttgttaatgtggtaaattacatttatagatttttt---ctattgttaaaaatcctgcca----------agacctagttttca---------------ttttatagatcactgtataaaagataatttgctaat----ttctaatgtagaatttttgccattaggttcatgaaggagattggt-tataatttttctttattgtacatttcttgtataatgtttttatcaagattatagtgactccataaaaatgaactaaaaagtgtta---cttcttttcccattgtgggatagtttttgtatgacaaaaataatacattccttgaaaacatttg-tagaactcatcagtaaaattgtctgggtctgattgttctctttttgtgaggagaatttttaacttctaattaagtgtcttt--accagtaagaaaa i canFam3.chr4 C 0 C 0 e chlSab2.chr4 46904657 0 + 91010382 C e rheMac3.chr6 48563508 1462 + 180491593 I a score=468760.000000 s hg38.chr1_KI270765v1_alt 95490 268 + 185285 ctttccagg-------tttc--ctTGAAC-----------------------------ATTAATAAATTCCAATGACGAAAAGCCCTCAGATAttaaatataaccttaaatataaccttCCCCCAAT---TCAATTTTTCTTTTGCAGATATGATTAGat----a----ctctaatttttcaacctctatttcacatatccattttcctttcctcctctgtactgtcttcagcataatttgttta-gtctaacttccaactcacttattttctttttggttctatccaatattgtgtttaacctgtccatttagtttt s panTro4.chr5 117717185 268 - 182651097 ctttccagg-------tttc--ctTGAAC-----------------------------ATGAATAAATTCCAATGATGAAAACCCCTCAGATAttaaatataaccttaaatataaccttTCCCCAAT---TCAATTTTTCTTTTGCAGAtctgattagat----a----ctctaatttttcaacctctatttcacatatcaattttcctttcctcctctgtactgtcttcagcataattttttta-gtctaacttccaactcacttattttctttttggttctatccaatattgtgtttaacctgtccatttagtttt i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48791419 268 + 183952662 ctttccagg-------tttc--ctTGAAC-----------------------------ATTAATAAATTCcaatgatgaaaacccctcagatattaaatataaccttaaatataacctttccccaat---tcaatttttcttttgcagatctgattagat----a----ctttaatttttcaacctctatttcacatatccattttcctttcctcctctgtactgtcttcagcataattttttta-gtctaacttccaactcacttattttctttttggttctatccaatattgtgtttaatctgtccatttagtttt i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54709975 256 + 109391073 ctttccagg-------tttc--ctTGAAC-----------------------------ATTAATAAATTCCAATGATGAAAAGCCCTCAGATA------------TCAAATATAACCTTTCCCCAAT---TCAATTTTTCTTTTGCAGATCTAAGTAAAT----A----CTCTAATTTTTCCatctctatttcacatatccattttcctttcctcctctgtactgtcttcagcataattttttta-gtctaacttccaactcacttattttctttttggttctatccaatattgtgtttaacctgtccatttagtttt i nomLeu3.chr12 C 0 C 0 s macFas5.chr6 49887888 267 + 181584905 ctttccagg-------tttc--ctTGAAC-----------------------------ATTAATGAATTCCAATGATGAAAAACCCTCAGATATTTAATATAACCTTATATATAACCTTTCCCAAAT---TCATTTTTTCTTTTGCATATCTGATTAGAT----A----CTTTAAtttttcaaactctatttcacatatcaattttcctttcctactctgtactgtcttcagcataa-ttttttg-gtctaacttccaagtcacttattttctttttagttctatccaatattgtgtttaacctgtccattgagtttt i macFas5.chr6 C 0 C 0 s papAnu2.chr6 46558466 226 + 174439528 ccctccaGG-------TTTC--CTTGAAC-----------------------------ATTAATGAATTCCAATGATGAAAAACCCTCAGATATTTAATATAACCTTAAATATAACCTTTcccaaat---tcattttttcttttgcatatctGATTAGAT----A----CTTTAATTTTTCAAACTCTATTTCACATA------------------------------------------TTTTG-GTCTAACTTCCAagtcacttattttctttttagatctATCCAATATTGTGTTTAACCTGtccattgagtttt i papAnu2.chr6 N 0 C 0 s calJac3.chr2 47255934 297 - 204313951 GTTTCCATG-------TTTA--TTTGAACCTGGAAAAAAAAAATTCCAATGATGAAAAATTAATAAATTCCAATGATgaaaa-tcctcagatattagtt----ccttaaatataacctttccccaat---tcagtttttcttttgtagatctgattagatacaga----ctctattttttcaaactctatttcacatatccattttcctttccttctctgtactgtattcagcataattatttggtatctaacttccaactcacttattttctttttggctctattcaatgttgtgtttaacctgtccattcagtttt i calJac3.chr2 C 0 C 0 s canFam3.chr4 23969581 277 - 88276631 tttttcaagtgctttatttcattttgAAC-----------------------------ATTAATAAATTTGAACTATGAAAAGTCTTCAGATATTATTT----CCTTGAGTACAACCTttcctaattctctttatttttcttttgtatgtcttatcagat----attgcctctgtttcttca--tcctacttcatatatccatcttcctgtcctcct-tgtgctgtattcagtatcatttcttcatatctaacttccagttc-cttattttatctttgaccctgtccaatctagcacttaatctgcccattgagtttt i canFam3.chr4 C 0 C 0 e chlSab2.chr4 46904657 0 + 91010382 C e rheMac3.chr6 48563508 1462 + 180491593 I a score=182066.000000 s hg38.chr1_KI270765v1_alt 95758 63 + 185285 taattttca-ttatattttttatttctaaaagatctcttaaattcagttt-caatctgcttaata s panTro4.chr5 117717453 63 - 182651097 taattttca-ttatattttttatttctaaaagatctcttaaattcagttt-caatctgcttaata i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48791687 63 + 183952662 taattttca-ttatattttttatttctaaaagatctcttaaattcagttt-caatcggcttaata i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54710231 63 + 109391073 taatttttg-ttatattttttatttctaaaagatctcttaaattcagttt-caatctgtttaata i nomLeu3.chr12 C 0 C 0 s rheMac3.chr6 48564970 63 + 180491593 taattttca-ttatgttttttgtttctaaaagatctcttaaattcagttt-caatctgcttaata i rheMac3.chr6 I 1462 C 0 s macFas5.chr6 49888155 63 + 181584905 taattttca-ttatgttttttgtttctaaaagatctcttaaattcagttt-caatctgcttaata i macFas5.chr6 C 0 C 0 s papAnu2.chr6 46558692 63 + 174439528 taattttca-ttatgttttttgtttctaaaagatCTCTTAAATTCAGTTT-CAATCTGCTTAATA i papAnu2.chr6 C 0 C 0 s calJac3.chr2 47256231 64 - 204313951 taattttcagttatattttttatatctaaaggatctcttaaattccgttc-caatctgcttaata i calJac3.chr2 C 0 C 0 s canFam3.chr4 23969858 64 - 88276631 taatgttca-ttatattttttatttctaaaagttctcttaaattcggttcgaaatctgcttaata i canFam3.chr4 C 0 C 0 e chlSab2.chr4 46904657 0 + 91010382 C a score=2960894.000000 s hg38.chr1_KI270765v1_alt 95821 904 + 185285 --taagatacatacactgtctca-atttatattcctggcacacctcattgattt-ttt--aaacatattaaacacagcttttatagttatataatcgtcctaatatctgaaatctttatgggcataattc--------tgtttctgctcatgatgtttatttcctcatgagttttgtaagagtcttac-ttttttctcattttggatgaaattttacctgtggccattctttgagacatgggctgaatgtgggtttctccaaagacactttgccttcgtct------tgtgtttggtggtaataccaacatgggataactataaaataaattatcagtttcatgtgtg-------------------------------------ggtttttttta---acttatacttacagtgaaaatttaaaccacaaattcatgtgaagatggccttctcattttt-----cctctaaatagcaccgagtttgaggcaggaaaatttcctggttgtctccccctgaggaacaggt-ttttatctagtttatcc-tttccctgaaattatagtccttcgtatctctggctttcagcagttttctcctgtaagactgctatactgggcaggcactaggttttgtctcacactctcccatatcccaggtggtcataaaaattgaagctcagggtactagggccaggactgtcct--------------------tatggaagctt-------ct-ggtttgggggtctgcatacctctctggatttatgtattctccttatgcttggcctatgtggttcaccttaatttctattcaagtcagtaatatacttttgaaaaatgacatgtacattttatctggtatttgtagatttcatatagcaggatagtgattcagcaaatttagtctaccacaatgctgggaatagaattccCCTAATTTTTGAAAACATTATATTAAATCATGTTTATTGCCATTAATA-----------------------------------GTCTTAT s panTro4.chr5 117717516 908 - 182651097 --taagatacacacactgtctca-atttatattcctggcacacctcattgatct-ttt--aaacatattaaacatagcttttatagttatataatcattctaatatctgaaatctttatgggcataattc--------tctttctgctcatgatgtttatttcctcatgagttttctaagagtcttag-ttttttctcattttggatgaaattttacctgtggccattctttgagacatggggtgaatgtgggtttctccaaagaccctttgccttcgtct------tgtgtttggaggtaataccaacatgggataatgataaaataaattatcagtttgatgtgtg-------------------------------------ggttttttttttttaattacacttacagtgaaaatttaaaccacaaattcatgtgaagatggccttgtaattttt-----cctctaaacagcactgagtttgaggcaggaaaatttcctggttgtctccccctgaggaacaggt-ttttatctagtttatcc-tttcactgaaattatagtccttcgtatctctggctttcaggagttttctcctgtaagactgttatactgggcaggcactaggttttgtctcacactttcccatatcccaggtggtcataaaaattgaagctcagggtactagggccaggactgtcct--------------------tatggaagcct-------cttggtttgggggtctgcatacctctctggatttatgtattctccttatgcttggcctatgtggttcaccttaatttctattcaagtcagtaatatacttctgaaaaatgatatgtacattttatctggtatttgcagattttatatagcaggatagtgattcagcaaatctagtctaccacaatgctaggaatagaattccCCTAATTTTTTAAAACATTATATCAAATCATGTTTATTGCCATTAATA-----------------------------------GTCTTAT i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48791750 905 + 183952662 --taaaatacatacactgtctca-atttatattcctggcacacctcattgattt-ttt--aaacatattaaacatagcttttatagttatataatcattctaatatctgaaatctttatgggcataactc--------tgcttctgctcatgatgtttatttcctcatgagttttgtaagagtcttac-ttttttctcattttggatgaaatttcacctgtggcccttctttgagacatgggatgaatgtgggtttctccaaagacactttgccttcgtct------tgtgtttggaggtaataccaacatgggataactgtaaaataaattatcagtttgatgagtg-------------------------------------gggtttttttt--taattatacttacagtgaaaatttaaaccacaaattcatgtgaagatggccttgtcattttt-----cctctaaatagcaccgagtttgaggcaggaaaatttcctggctgtctacccctgaggaacaggt-ttttatctagtttatcc-tttcactgaaattatagtccttcatatctctggctttcagcagttttctcctgtaagactgttatactgggcaggcactaggttttgtctcacactctcccatatcccaggtggtcataaaaattgaagctcagggtacttgggccaggactgtcct--------------------tatggaagcct-------ct-ggtttggtggtctgcatacctctctggatttatgtattttccttatgcttggcctatgtggttcaccttaatttctattcaagtcagtaatatacttttgaaaaatgacatgtacattttatctggtatttgtagattttatatagcaggatagtgattcagcaaatctagtctaccacaatgctaggaatagaattccCCTAATTTTTGAAAACATTATATCAAATCATGTTTATTGCCATTAATA-----------------------------------GTCGTAT i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54710294 903 + 109391073 --taagatacatacactgtctca-atttatattcctggcacacctcattgattt-ttt--aaacatattaaacatagcttttatagttatataatcattctaatatctgaaatctttatgggcataattc--------tgtttctgctcatgatgtttatttcctcatgagttttgtaagagtcttac-ttttttctcaatttggatgaaattttacctgtggccattctttcagacatggggtgaatgtgggtttctccaaagacactttgccttggtct------tgtgtttggaggtaataccaacatgggataaccataaaatagattatcagtttgatgtgtg-------------------------------------gggtttttttt---aattatacttacagtgaaaatttaaactacagattcacgtgaagatggccttgtaattttt------gtctaaatagcaccgagtttgaggcaggaaaatttcctggttgtctcccgctgaggaacaggt-ttttatctagtttatcc-tttcactgaaattatagtcctttgtatctctggctttcagcagttttctcctgtaagactgttaaactgggcaggcactaggttttgtctcacactgtcccatatcccaggtggtcataaaaattgaagctcagggtactagggccaggactgtcct--------------------tatggaagcct-------ct-ggtttgggggtctgcctacctctctggatttatgtattctccttatgcttggcctatgtggttcaccttaatttctattcaagtcaataatatacttttgaaaaatgacatgtacattttatctggtatttgtagattttatatagcaggatagtgattcagcaaatctagtctaccacaatgctaggaatagacttccCCTAATTTTTGAAaacattatatcaaatcatgtttattgccattaata-----------------------------------gtcttat i nomLeu3.chr12 C 0 C 0 s rheMac3.chr6 48565033 919 + 180491593 --taagatacatacaccatctcacatttatattcctggcacacctcattgagtt-ttt--aaacatattaaacatagcttttatagttatataatcattctaatatctgaagtctttatgagcataattc--------tgtttctgctcatgatgtttatttcctcatgagttttgtaagagtcttac-tttttcctcattttgggtgaaatttta------------ctttgagacatggggtgaatgtgggtttctccgaagacactttgcctttgtct------tgtgTTTGGAGGTAATACCAACATGTGATAACTATAAAATAAATTAACAGTTTGATGTGTG-------------------------------------GCTTTTTTTGA---AATTATACTAACAGTGAAAATTTAAACCACAAATTCATGTGAAGATGGCCTTGTAAttttc-----cctctaaatagcgccgagtttgaggcaggaaaatttcatggttgtctccccctgaggaacaggt-ttttatctagtttattc-tttcactgaaattatagtccttcgtatctctggctttcagcagttttctcctgtaagactattatactgagcaggcactaggttttgtatcacattctcccatattccaggtggtcataaaaattgaagctcagggtactagggccaggactgtccttatggaagtcTGGATTTCCATATGGAAGTCTGGAAGTCCT-GGTTTGGGAGTCtgcatacctctctggatttatgtattctccttatgcttggcctatgcggctcaccttaatttctattcaagtcagtaatatacttttgaaaaatgacatgtacattttatctggtatttgtagagtttatatagcaggatagtgattcagcaaatctagtctaccacaatgttaggaatagaatt-ccCTAATTTTTGAAAACATTATATCAAATCACATTTATTGCCATTAATA-----------------------------------GTCTTAT i rheMac3.chr6 C 0 C 0 s macFas5.chr6 49888218 919 + 181584905 --taagatacatacaccgtctcacatttatattcctggcacacctcattgagtt-ttt--aaacacattaaacatagcttttatagttatataatcattctaatatctgaagtctttatgagcataattc--------tgtttctgctcatgatgtttatttcctcatgagttttgtaagagtcttac-tttttcctcattttgggtgaaatttta------------ctttgagacatggggtgaatgtgggtttctccgaagacactttgcctttgtct------tgtgtttggaggtaataccaacatgtgataactataaaataaattaacagtttgatgtgtg-------------------------------------gctttttttga---aattatactaacagtgaaaatttaaaccacaaattcatgtgaagatggccttgtaattttt-----cctctaaatagcgccgagtttgaagcaggaaaatttcgtggttgtctccccctgaggaacaggt-ttttatctagtttattc-tttcactgaaattatagtccttcgtatctctggctttcagcagttttctcctgtaagactattatactgagcaggcactaggttttgtatcacattctcccatattccaggtggtcataaaaattgaagctcagggtactagggccaggactgtccttatggaagtctggatttccatatggaagtctggaagtcct-ggtttgggagtctgcatacctctctggatttatgtattctccttatgcttggcctatgcggctcaccttaatttctattcaagtcagtaatatacttttgaaaaatgacatgtacattttatctggtatttgtagagtttatatagcaggatagtgattcagcaaatctagtctaccacaatgctaggaatagaatt-ccCTAATTTTTGAAAACATTATATCAAATCACATTTATTGCCATTAATA-----------------------------------GTCTTAT i macFas5.chr6 C 0 C 0 s papAnu2.chr6 46558755 931 + 174439528 --TAAGATACATACACCGTCTCACATTTATATTCCTGGCACACCTCATTGagtt-ttt--aaacatattaaacataGCTTTTATAGTTATATAATCATTCTAATATCTGAAGTCTTTATGGGCATAATTC--------TGTTTCTGCTCATGATGTTTATTTCCTCATGAGTTTTTTAAGAGTCTTAC-TTTTTCCTCATTTTGGGTGAAATTTTACCTGTGGCCATTCTTTGAGACATGGGGTGAATGTGGGTTTCTCCGAAGACACTTTGCCTTTGTCT------TGTGTTTGGAGGTAATACCAACATGTGAtaactacaaaataaattaacagtTTGATGTGTG-------------------------------------GCtttttttGA---AATTATACTAACAGTGAAAATTTAAACCACAAATTCATGTGAAGATGGCCTTGTAATTTTT-----CCTCTAAATAGCGCCgagtttgaggcaggaaaatttcgTGGTTGTCTCCCCCTGAGGAACAGGT-TTTTATCTAGTTTATTC-TTTCACTGAAATTATAGTCCTTCGTATCTCTGGCTTTCAGCAGTTTTCTCCTGTAAGACTATTATACTGAGCAGGCACTAGGTTTTGTATCACATTCTCCCATATTCCAGGCGGTCATAAAAATTGAAGCTCAGGGTACTAGGGCCAGGACTGTCCTTATGGAAGTCTGGGTTTCCATATGGAAGTCTGGAAGTCCT-GGTTTGGGAGTCTGCATACCTCTCTGGATTTATGTATTCTCCTTATGCTTGGCCTATGCGGCTCACCTTAATTTCTATTCAAGTCAGTAATATACTTTTGAAAAATGACATGTACATTTTATCTGGTATTTGTAGAGTTTATATAGCAGGATAGTGATTCAGCAAATCTAGTCTACCACAATGCTAGGAATAGAATT-CcctaatttttgaaaacattatatcAAATCACATTTATTGCCATTAATA-----------------------------------GTCTTAT i papAnu2.chr6 C 0 C 0 s chlSab2.chr4 46904657 907 + 91010382 --TAAGATACATACACCGTCTCACATTTATATTCCTGGCACACCTCATTGAGtt-ttt--aaacatattaaacatagcttttatagttatataatcattctaatatctgaagtctttatgggcataattc--------tgtttctgctcatgatgcttatttcctcatgagttttgtaagagtcttac-tttttcctcattttgggtgaaattttacctgtggccattctttgagacatggggtgaatgtgggtttctccaaagacactttgcctttgtct------tgtgtttggaggtaataccaacatgtgataactataaaata----aacagtttgatgtgtg-------------------------------------gctttttttga---aattatactaacagtgaaaatttaaaccacaaattcatgtgaagatggccttgtaattttt-----cctctaaatagcgccgagtttgaggcaggaaaatttcgtggttgtctccccctgaggaacaggt-ttttatctagtttattc-tttcactgaaattatagtcctttgtatctctgtctttcagcagttttctcctgtaagactattatactgagcaggcactaggttttgtatcacattctcccatattccaggcggtcataaaaattgaagctcagggtactagggccaggactgtcct--------------------tatggaagtctggaagtcct-ggtttgggagtctgcatacctctctggatttatgtattctccttatgcttggcctatgcggcccaccttaatttctattcaagtcagtaatatacttttgaaaaatgacatgtacattttatctggtatttgtagagtttatatagcaagatagtgattcagcaaatctagtctaccacaatgctaggaatagaatt-ccCTAATTTTTGAAAACATTATATCAAATCACATTTATTGCCATTAATA-----------------------------------ATCTTAT i chlSab2.chr4 C 0 C 0 s calJac3.chr2 47256295 942 - 204313951 --taagataaatacactgtttcaaatttatattccttgcacatctcatttattt-tttaaaaacatatttaacatagtttttaaagtaatataatcatcctaatatctgaaatctttatgggcataatta--------tgattttactcatggtgtttattttcttatgagttttgta--agttttgc-ttttatctcattttggatggaattttacctgtggtcattctttgagacatggagtaaatgtgggtttctccaaagacactttaattttgttt------tgtgtttggaggtaatatcaacatgggataactataaaataaattatcagttttatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttttga---aattatacttgcagcgagcatttaaaccataaattcatgtgaagatggccttgtgattttg-----cctctaaatagcaccaagtttgaggcaggaaaatttccttgttgtct-ccactgaggaaacaag-ttttgtctagtttatccttttccctgaaattatagtccttcgtaactctggctttcagcagttttttctggtaagactgttatactgagcagtcactaggctttgtctcacactctcccatatcccaggtggtccgaaaaattgaagctcaggatactagggccagtactgtcct--------------------tatggaagcct-------gt-ggtttaggtgtctgcatacctatctgaatttatgtattctccttatgcttggcctatggaattcaccttaatttcttttcaagtcagtaatatactttttcaaaatgacatgtatgttttgtctggtatttgtagattttatatagcagggtagtgattcagcaaatctagtctaccacaatactgggaatagaaatcccctactttttgcaaacattatatcaaatcatgtctattgctattaata-----------------------------------attttat i calJac3.chr2 C 0 C 0 s canFam3.chr4 23969922 934 - 88276631 catgatatatatatactgttgctaacttatgttactggcacacttcactgatttcttt--aagcatattcaatttagtttttattgttacataa---ttctaatatctgaaatcttcatgagtatagttctatttttatgtttctgctcatgatgcctatctcctcattagttttgtga----tttacatttaatctcacgtttaatggaattttgtctgta---attctctgagacctggaat--acacagatttctctaaagatgctttgcttttgtttgggctaggttcttagagataacaccaaactgggacaattataaaataaatt-tcagc--------ta-------------------------------------ggttttctctt---acttatagagagtgtgagaatttaaactacaaaatcatgtgaagatgcacttattatttttttcctcctcaacctatcaccaagtttggggcagaaaaatgtcctaattgcc--cctctaaggggaagttatttttcctatgttatcc-tttcactgaaattatagtcctttagatttctggctttaaacaggtttctcTAG-AAAATGACTACACTGGG-AAGCTCTAGGCTCTGTGTCCCACTCTCCCATATCTTGGATAGTCATAAAAATTGAAAGTCAGGGTTC-AGGGACAGCATTGTTT---------------------TGTGGAAGTAT-------CT-GGTTACGGTGCTTTAATAGTTCTCTGGATTCATATATTCTCCTCATGGTCTTCTTATG-GGTATACCTTAATTCCTTGGCGAGTCAGCAATACACTT-TAATAAATGGCATATACATTTTATCTGGTCTTTGTGGATGTTATACAGTGTTATGGTGGTCCAGCAAAT-TAGTCTACCATATTGTTAGTAGGAAAAAAACTCAGCTTTTTGAGAATACTATGTCAAATCATTTTTATTGCCATTAATATTTTTTAGAACTCTGCttttgttttattttattttgttttat i canFam3.chr4 C 0 I 164 a score=2118783.000000 s hg38.chr1_KI270765v1_alt 96725 663 + 185285 AAATGTGCTTTTAACTAACTGCA-----TTTTGTCATAGCTCATTGTGATTGTATATTTAACTAGTTCACC--CCTACCTCATGTTT---TTTGGGAGTGAAGGTTGTACTCAACTCATTAAGTTAAGTAATACTACAGTAAACATCAATCTATACATGCATTAATAATGATTTCCAAGAAAG----TAGTGACACATGGT-----CATAATcatctttgaggctgatggtacatattttcaaattgcatctcagaaataat-ataccaatctgtgctctaatc-agccgcatatgaaagtg-tcatctttctgttctccaaccaat-acaactactactgtttttatacctgcaaatctgacaaagatgtgagaaggcatcttatagtttcaatttgtatttctttggtgaccaatgTACTAAATTACTCAATGTACTAAATTACTCTTTTCCTGTTTATGATCCATTTCAAACAAAATGTAAACCATTTTTTAAAT--TTTTTTATATTAATGCAAATCGTAAATCACTACTTTATTTATTCAA-----CTTCCTAAGCAAAATTATATGTTGTCCCATTTATA---------------CATTTTATATTAGATCTTTCTGCCTTACATTTATAACCT--AAAAAATGTCAGAATTATATAATAATGATGAACAGTTGATTATAAATAATGTCTTTATTAGGATA-TTT s panTro4.chr5 117718424 647 - 182651097 AAGTGTGATTTTAAGTAAATGCA-----TTTTGTTATAACTCGTTGTGATTGTATATTTAACTAATTCACC--CCTACCTCATGTTT---TTTGGGAGTGAAGGTTGTACTCAACTCACTATATTAAGTAATACTACAGTAAACATCAATCTATACATGCATTAATAATGATTTCCAAGAAAG----TAGTGAAACATGGT-----CATAATcatctttgaggctgatggtatatattttcaaattgcatctcagaaataatgataccaatgtgtgctctaatc-agccgcatatgaaagtg-ttgtctttctgttctccaaccaat-acaactaccactgtttttgtacctacaaatctggcaaagatgtgagaaggcatcttattgtttcaatttgtatttctttggtgaccaatgTACTAAATTGCTC-----------------TTTTCCTATTTATCATCTTTTTCAAACAAAATGTAAACCattttttaaat--ttttttatattaatGCAAATCCTAAATCACTACTTTATTTATTCAA-----TTTCCTAAGCAGAATTATATGTTGTCCCATTTATA---------------CATTTTATATTAGATCATTCTGCCTTACATTTATATGCT--AAAAACTGTCAGAATTATATAATAATTATGAACAGTTGATTATAAATAATGTCTTTATTAGGATA-TTT i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48792655 646 + 183952662 AAGTGTGCTTTTAAGTAACTGCA-----TTTTGTTATAGCTCGTTGTGATTGTATATTTAACTAATTCACC--CCTACCTCATGTTT---TTTGGGAGTGAAGGTTGTACTCAACTCACTATATTAAGTAATACTACAGTAAACATCAATCTATACATGCATTAATAATGATTTCCAAGAAAG----TAGTGAAACATGGT-----CATAATcatctttgaggctgatggtacatattttcaaattgcatctcagaaataatgataccaatttgtgctctaatc-agccgcatatgaaagtg-tcatctttctgttctccaaccaat-acaactaccactgtttttgtacctacaaatctggcaaagatgtgagaaggcatcttattctttcaatttgtatttctttggtgaccaatgTACCAAATTACTC-----------------TTTTCCTATTTATCATCCATTTCAAACAAAATGTAAACCattttttaaat--ttttttatattaatGCAAATCCTAAATCACTACTTTATTTATTCAA-----TTTCCTAAGCAAAATTATATG-TATCCCATTTATA---------------CATTTTATATTAGATCATTCTGCCTTACATTTATATGCT--AAAAACTGTCAGAATTATATAATAATTATGAACAGTTGATTATAAATAATATCTTTATTAGGATA-TTT i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54711197 641 + 109391073 aaatgtgcttttaagtaactgca-----ttttgttatagctcgttgtgattgtatatttaactaattcacc--cctacctcatgttt---tttggaagtgaaggttgtactcaacccactgtattaagtaacactacagtaaacatcaatctatatatgcattaataatgatttccaagaaag----tagtgacacatggt-----cataatcatctttgaggctgatggtacatattttcaaattgtctctcagaaataatgatactaatttgtgctctaatc-agccgcatatgaaagtg-tcatctttctgttctccaatcagt-acaactaccactgtttttatacctacaaatctggcaaagatgtgagaaggcatcttattgtttcaatttgtatttctttggtgaccaatgcactaaattactc-----------------ttttcctatttatcatccattTCAAACAAAATGTAAACCA-TTTTTAAAT--GTTTTTATATTAATGCAAATCATAAATCACTAC----TTTATTCAA-----TTTCCTAAGCAAAATTATATG-TTTCCTATTTATA---------------TATTTTATATTAGATCATTCTGCCTTACATTTCTATCCT--AAAAGCTGTCAGAATTATATAATAATTATGAACAGTTGATTATAAATAATGTCTTTATTAGGATA-TTT i nomLeu3.chr12 C 0 C 0 s rheMac3.chr6 48565952 662 + 180491593 AAATGTGCTTTTAAGTAACTGCA-----TTTTGTTATAGCTCGTTGTTATTGTATATTTAATTAATTCGCC--CCTACCTCATGTTT---TTTGGAAGTGAAGGTTGTACTCAACTCACTATGTTAAGTAATACTACAGTAAACATCAATCTATACATGCATTAATAATGATTTCCAAGAAAG----TGGTGAATCGTGGT-----CATAATcatctttgatgctgatggtacatattctcaaattacatctcagaaataatgacaccaatttctgctctaatc-agccatatatgaaagtg-tcatgtttctgttctctaaccaat-acagctaccactgtttttatacctaaaaatctggcaaagatgtgagaagacatcttattgtttcaatttatatttctttggtgacaaAGGTACTAAATTACTCAATGTACTAAATTACTATTTTCCTATTTATCATCCATTTCAAACAAAATGTAAACCATTTTTTAAA----ATTTTGTATTAATGCAAATCCTAAATCACTACTTTATTTATTCAA-----TTTCCTAAGCAAAATTATATGTTGTTGCATTTATA---------------CATTTTATATTAGATCATTCTGCCTTATGTTTATATCCT--AAAAACTGTCAGAATTATATAATAATTATGAACAGTTGATTACAAATAATGTCTTTATTAGGATA-TTT i rheMac3.chr6 C 0 C 0 s macFas5.chr6 49889137 662 + 181584905 AAATGTGCTTTTAAGTAACTGCA-----TTTTGTTATAGCTCGTTGTTATTGTATATTTAATTAATTCGCC--CCTACCTCATGTTT---TTTGGAAGTGAAGGTTGTACTCAACTCACTATGTTAAGTAATACTACAGTAAACATCAATCTATACATGCATTAATAATGATTTCCAAGAAAG----TGGTGAATCGTGGT-----CATAATcatctttgaggctgatggtacatattctcaaattacatctcagaaataatgacaccaatttctgctctaatc-agccatatatgaaagtg-tcatgtttctgttctctaaccaat-acagctaccactgtttttatacctaaaaatctggcaaagatgtgagaagacatcttattgtttcaatttatatttctttggtgacaaAGGTACTAAATTACTCAATGTACTAAATTACTATTTTCCTATTTATCATCCATTTCAAACAAAATGTAAACCATTTTTTAAA----ATTTTGTATTAATGCAAATCCTAAATCACTACTTTATTTATTCAA-----TTTCCTAAGCAAAATTATATGTTGTTGCATTTATA---------------CATTTTATATTAGATCATTCTGCCTTATGTTTATATCCT--AAAAACTGTCAGAATTACATAATAATTATGAACAGTTGATTACAAATAATGTCTTTATTAGGATA-TTT i macFas5.chr6 C 0 C 0 s papAnu2.chr6 46559686 662 + 174439528 AAATGTGCTTTTAAGTAACTGCA-----TTTTGTTATAGCTCGTTGTTATTGTATATTTAATTAATTCGCC--CCTACCTCATGTTT---TTTGGAAGTGAAGGTTGTACTCAACTCACTATGTTAAGTAATACTACAGTAAACATCAATCTATACATGCATTAATAATGATTTCCAAGAAAG----TGGTGAATCGTGGT-----CATAATCATCTTTGAGGCTGATGGTACATATTCTCAAATTACATCTCAGAAATAATGACACCAATTTGTGCTCTAATC-AGCCATATATGAAAGTG-TCATGTTTCTGTTCTCTAACCAAT-ACAGCTACCACTGTTTTTATACCTACAAATCTGGCAAAGATGTGAGAAGACATCTTATTgtttcaatttatatttctttggtgaCAAAGGTACTAAATTACTCAATGTACTAAATTACTATTTTCCTATTTATCAtccatttcaaacaaaatgtaaaccattttttaaa----attttgtattaatgCAAATCCTAAATCACtactttatttattcaa-----tttcctAAGCAAAATTATATGTTGTcccatttata---------------cattttatattagatCATTCTGCCTTATGTTTATATCTG--AAAAACTGTCAGAATTACATAATAATTATGAACAGTTGATTACAAATAATGTCTTTATTAGGATA-TTT i papAnu2.chr6 C 0 C 0 s chlSab2.chr4 46905564 677 + 91010382 AAATGTGCTTTTAAGTAACTGCA-----TTTTGTTATAGCTTGTTGTTATTGTATATTTAATTAATTCGCC--CCTACCTCATGCTT---TTTGGAAGTGAAGGTTGTACTCAACTCACTATGTTAAGTAATACTACAGTAAACATCAATCTATACATGCATTAATAATGATTTCCAAGAAAG----TGGTGAATCGTGCT-----CATAGTcatctttgaggctgatggtacatattctcaaattacatctcagaaataatgacaccaatttgtgctctaatc-agccatatatgaaagtg-tcatgtttctgttctccaaccaat-acagctaccactgtttttatacctacaaatctggcaaagatgtgagaagacatcttattgtttcaatttatatttctttggtgacaaAGGTACTAAATTACTCAATGTACTAAATTACTATTTTCCTATTTATGATCCATTTCAAACAAAATGTAAACCATTTTTTAAA----ATTTTGTATTAATGCAAATCCTAAATCACTACTTTATTTATTCAA-----TTTCCTAAGCAAAATTGTATGTTGTCCCATttatacattttatattatatcattttatattagatcatTCTGCCTTATGTTTATATCCT--AAAAACTGTCAGAATTATATAATAATTATGAACAGTTGATTACAAATAATGTCTTTATTAGGATA-TTT i chlSab2.chr4 C 0 C 0 s calJac3.chr2 47257237 654 - 204313951 aaatgtgcttttaagtaactgcatagcgttttgttacagctcgttgttattgtgtatttaactaattcatc--cctacctcatgtttttatttggaagtgaagattgtactcaacacactatattaagtaatactacagtaaacatcaatctatacatgcattaataatgatttccaagaaagtaattagtgaatcatggt-----cataatcatctttgaggctaacagtacatattttcaaattgcat-tcagaaataatggtacttatttgtgctctaatc-agccacatatgaaagtg-tcatttttatgttctccaaccaat-acagctaccactgtttttatacctacaaatctggcacatatgtgagaaggcatcttattgtctcaatttgtatttctttggtgaccaatgaACTAAATTACTTGGTA--------------------GTGTATCATCCATTTCAAACAAAATGTAAACCGTTTTTAAAAT--TGTTTTATATTAATGCCAGCCCTAAATCACTAGTTTATTTATTCGA-----TTTCCTAAGCAAAATTACATGTTGTCCCATATATA---------------CATTTTATATTAGATCATTCTGCCTTATGTTTATATCCT--AAAAACTGTC--AATTATATAATAATTATGAACAGGTGATTATACATAATGTCTTTATTAGGATATTTT i calJac3.chr2 C 0 C 0 s canFam3.chr4 23971020 653 - 88276631 AACTTTGCTTTTAAATATCTGCACAGCATTTTGTTACATCTTTTTGT-----TATATTTAACTAATCTGCCCTCCTTCCCTTTGTtt---tttggaaatgaaggttgtactcagctcttcattttaaataacattgcaataaataccactctacatatggatttatggttatttcctagggaataattagtgaatcatggtaaatgtatagtc----ttgatgcttgagatacatattttcaaattgtatcccagaaataatggtaccaatttatactccaatcaagctgcatttgaaagtgcccatttcactgcattcctaccaagaaaaactatcactatttttatacctataaatctgacaaagactttagaaggcatcttattatttcaatttgtatttgttagat--------tattaaattactcagca-------------ttttattatctgt------ttttggacacaatttaaacattttttcttattgtTTTTTATATTAATGCAAACCGTATATCACTACTTTCTTGGTCCAAAATGGTTTCCCAAGCAAAATTATATA-CTCCTTATTTGTA---------------TGTTTTACACTGGATTATTCT-TCTTATATTTACATCTTGCAAAATCTGTTAAAA-TATATATTAATTATGAATGATTGATCATACGTAATATCTTTACTAGGAAA-TTT i canFam3.chr4 I 164 I 207 a score=2422288.000000 s hg38.chr1_KI270765v1_alt 97388 719 + 185285 CTCCATAAATCTAAATTTCATCAATCTTTCTTTAAATATCTCTACACAATGTCCTCTTGTATTATATTAATAATTGCAGATACACttctttttgc-tatttctatt----ctttcctatt-cctattGTCTGTTAGTCTCCC-ATTTTCTCCCATAAAATAAATAAAAATTTTTCTATCAGATTCTGTGATATATTACTTCTTATTCCCAGCCTT---CAACATTTTAAGAATTCATATTGACCTTTTCTCCCA---TTCTTATTTCAAGTTATCAGCATGTTGATACTTGGGAAATCCCATCAAGTGTTTAACAGTGCATACCTTACTGATTCATTATTTATTTCAATTTAATCTTTCTTATTTTCATTCAACTTTTTTCTCAGTA--ATACAACTTTTTCAAGCTTTTTATTTTCT----AATGCATTTCTCCAAATAGCAGCCATAACCCTTATATGCCCTCTTTCAATGACAACAACAAAAGTGTGCTAGGCTTCTTGGAAGAAAATAATGATACCAATTCAAGAAGGAGAAAATTGATGTACTGATAAACAAATGGGCATCTTAGGATCATGTTTCTCACAAGTAAGGCAGTTCCAGAAATTCCTAGGACCATAATGGGTTTTATTCTAAATAGGTTAAACATATCACTTAAAAAATTGTTTTCTACAGTTCTCTAATATTGCTTACAATTGTCCACGTTTCCATGTTTATAAACTTGCACtttttttttttt s panTro4.chr5 117719071 722 - 182651097 TTCCATAAATCTAAATTTCATCAATCTTTCTTTAAATATCTCTACACAATTTCCTCTTGTATTATATTAATAATTGCAGATACACTTCTTTTTGC-TATTTCTATTAATGCTTTCCTATT-CCTATTGTCTGTTAGTCTCCC-ATTTTCTCCCataaaataaataaaaattttaCTACCAGATTCTGTGATATATTACTTCTTATTCCCAGCCTT---CAACATTTTAAGAATTCAGATTGACCTTTTCTCCCA---TTCTTATTTCAAGTTATCAGCATGTCAATACTTGGGAAATCTCATCAAGTGTTTAACAGTGCATACCTTACTGACTCATTATTTATTTCAGTTTAA-CTTTCTTATTTTCATTCAACATTTTTCTCCATA--ATATGACTTTTTCAAGCTTTTTATTTTCT----AATGCATTTCTCCAAATAGCAGCCATAACCCTTATATGCCCTCTTTCAATGACAGCCACAAAAGTGTGCTAGGCTTCTTGGAAGAAAATAATTATACCAATTTAAGAAGGAGAAAATTGATGTACTGATAAACAAATGGGCATCTTAGGATCATGTTTCTCACAAGTAAAGCAGTTCCAGAAATTCCTAGGACCCTAATGAGTTTTATTGTAAATAGGTTAAACATATCACGTAAAAAATTGTTTTCTACAGTTCTCTAATATTGCTTACAATTGTCCACGTTTCCATGTTTATAAACTTGCCttttttttttttt i panTro4.chr5 C 0 I 2 s ponAbe2.chr5 48793301 720 + 183952662 CTCCATAAATCTAAATTTCATCAATCCTTCTTTAAATATCTCTACACAATTTCTTCTTGTATTATATTAATAATTGCAGATACACTTCTTTTTGC-TATTTCTATTAATTCTTTCCTATT-CCTATTGTCTGTTAGTCTCTC-ATTTTCTCCCataaaataaataaaaattttaCTATCAGATTCTGTGATATATTACTTCTTATTCCCAGCCTT---CAACATTTTAAGAACTCAGATTGACCTTTTCTCCCA---TTCTTATTTCAAGTTATCAGCATATCAGTACTTGGGAAATCTCATCAAGTGTTTAACAGTGCATACCTTACTGACTC---ATTTATTTCAATTTAATCTTTCTTATTTTCATTCAGCTTTTTTCTCAGTA--ATATGACTTTTTCAAGCTTTTTATTTTCT----AATGCATTTCTCCAAATAGCAGCCATAACCCTTATATGCCCTCTTTCAATGACAACAACAAAAGTGTGCTAGGCTTCTTGGAAGAAAATAATTATACCAATTTAAGAAGGAGAAAATTGATGTACTGATAAACAAATGGGCATCTTAGGATCATGTTTCTCACAAGCAAAGCAGTTCCAGAAACTCCTAGGACCCTAATGGGTTTTCTTGTAAATAGGTTAAACATATCACTTAAAAAATTGTTTTCTACAGTTCTCTAATATTGCTTACAATTGTCCACGTTTCCATGTTTATAAACTTGCCttttttttttttt i ponAbe2.chr5 C 0 I 1 s nomLeu3.chr12 54711838 710 + 109391073 CTCCATAAATCTAAATTTCATCAATCTTTATTTAAATATCTCTACACAATTTCCTCTTGTATTATATTAATAATTGCAGATACACTTCTTTTTGC-TATTTCTATTAATTCTTTCCTATT-CC-AATATCTGTTAGTCTCCC-ATTTTCTCCCATAAAATAAATAAAAATTTTACTATCAGATTCTGTGATACATTACTTCTTATTCCCAGCCTT---CAACATTTTAAAAATTCAGAATGACCTTTTCTGCCA---TTCTTATTTCAAGTTATCAGCATTTCAATACTTGGGAAATCTCATCAACTGTTTAACAGTGCATATCTTACTGGCTCATTATTTATTTCAGTTTAATCTTTCCTATTTTCATTCAACTTTTTTCTCAGTA--ACACAACTTTTTCAAGCT----------------ATGCATTTCTCCAAATAGCAGCCATAACCCTTATATGCCCTCTTTCAATGACAACAACAAAAGTGTGCTAGGCTTCTTGGAAGAAAATAATTATACCAATTTAAGAAGGAGAAAATTGATGTACTGATAAACAAATGGGCATCTTAGGATCATGTTTCTCACAAGTAAGGCAGTTCCAGAAATTCCTAGGACCCTAATGGGTTTTATTCTAAATAGGTTAAACACATCACTTAAAAAATTGTTTTCTACAGTTCTCTAATATTGCTTACAATTGTCCACGTTTCCGTGTTTATAAACTTGCCCCCtttttttttt i nomLeu3.chr12 C 0 I 1 s rheMac3.chr6 48566614 723 + 180491593 CTCCATAAATCTAAATTTTATCAATCTTTCTTTAAATAGCTCTACACAGTTTCCTCTTGTATTATATTAATAATTGCAGATACACTTCTTTTTGC-TATTTCTATTAATTCTTTCCTATT-CCTATTGTCTGTTAGTCTCCC-TTTTTCTCCCataaaataaataaaaattttaGTATCAGATTCTATGATATATTACTTCTTATTCCCAGCCTT---CAACATTTTAAGAATTCAGATTGACCTTTTCTCCCA---TTGTTACTTCAAGTTATCAGCATGTCAATACTAGGGAAATCTCATCAAGTGTTTAACAGTGCATACCTTACTGACTCATTATTTATTTCAATTTAATCTTTCTTATTTTCATTCAACTTTTTTCTCAGTAATATATGACTTTTTCAAGCTTTTTATTTTCT----AACGCATTTCTCCAAATAGCAGCCATAACCCTTATATGCCCTCTTTCAATGACAACAACAAAAATGTGCCAGGCTTCTTGGAAGAAAATAATTATACCAATTTAAGAAGGAGAAAATTGATGTACTGATAAACAAATGGGCATCTTAGGATCATGTTTCTCACAAGTAAAGCAGTTCCAGAAATTCCTAGGACCCTAATGGGTTTTATTCTAAATAGGTTAAACACACAACTTAAAAAATTGTTTTCTGCAGTTCTCTAATATTGCTTACAATTGTCCATATTTCCGTGTTTAT--ACTTGCCTTTTTTTTTTTTT i rheMac3.chr6 C 0 I 366 s macFas5.chr6 49889799 723 + 181584905 CTCCATAAATCTAAATTTTATCAATCTTTCTTTAAATAGCTCTACACAGTTTCCTCTTGTATTATATTAATAATTGCAGATACACttctttttgc-tatttctattaattctttcctatt-cctattGTCTGTTAGTCTCCC-TTTTTCTCCCATAAAATAAATAAAAATTTTAGTATCAGATTCTATGATATATTACTTCTTATTCCCAGCCTT---CAACATTTTAAGAATTCAGATTGACCTTTTCTCCCA---TTGTTACTTCAAGTTATCAGCATGTCAATACTAGGGAAATCTCATCAAGTGTTTAACAGTGCATACCTTACTGACTCATTATTTATTTCAATTTAATCTTTCTTATTTTCATTCAACTTTTTTCTCAGTAATATATGACTTTTTCAAGCTTTTTATTTTCT----AATGCATTTCTCCAAATAGCAGCCATAACCCTTATATGCCCTCTTTCAATGACAACAACAAAAATGTGCCAGGCTTCTTGGAAGAAAATAATTATACCAATTTAAGAAGGAGAAAATTGATGTACTGATAAACAAATGGGCATCTTAGGATCATGTTTCTCACAAGTAAAGCAGTTCCAGAAATTCCTAGGACCCTAATGGGTTTTATTCTAAATAGGTTAAACACACCACTTAAAAAATTGTTTTCTGCAGTTCTCTAATATTGCTTACAATTGTCCATATTTCCGTGTTTAT--ACTTGCCttttttttttttt i macFas5.chr6 C 0 I 6 s papAnu2.chr6 46560348 723 + 174439528 CTCCATAAATCTAAATTTTATCAATCTTTCTTTAAATAGCTCTACACAATTTCCTCttgtattatattaataattgcagatacatttctttttgc-tatttctaTTAATTCTTTCCTATT-CCTATTGTCTGTTAGTCTCCC-TTTTTCtcccataaaataaataaaaattttagtatcATATTCTGTGATATATTACTTCTTATTCCCAGCCTT---CAACATTTTAAGAATTCAGATTGACCTTTTCTCCCA---TTGTTACTTCAAGTTATCAGCATGTCAATACTCGGGAAATCTCATCAAGTGTTTAACAGTGCATACCTTACTGActcattatttatttcaatttaatctttcttattttcattcaacttttttctcagtaatatatgactttttcaagctttttattttct----aatgcatTTCTCCAAATAGCAGCCATAACCCTTATATGCCCTCTttcaatgacaacaacaaaaatgtgctaggcttcttggaagaaaataattataccaATTTAAGAAGGAGAAAATTGATGTACTGATAAACAAATGGGCATCTTAGGATCATGTTTCTCACAAGTAAAGCAGTTCCAGAAATTCCTAGGACCCTAATGGGTTTTATTCTAAATAGGTTAAACACAccacttaaaaaattgttttctgcaGTTCTCTAATATTGCTTACAATTGTCCATATTTCCGTGTTTAt--acttgccctttttttttttt i papAnu2.chr6 C 0 I 5 s chlSab2.chr4 46906241 723 + 91010382 CTCCATAAATCTAAATTTTATCAATCTTTCTTTAAATAGCTCTACACAATTTCCTCTTGTATTATATTAATAATTGCAGATACACTTCTTTTTGC-TATGTCTATTAATTCTTTCCTATT-CCTATTGTCTGTTAGTCTCCC-TTTTTCTCCCATAAAATAAATAAAAATTTTAGTATCAGATTCTATGATATATTACTTCTTATTCCCAGCCTT---CAACATTTTAAGAATTCAGATTGACCTTTTCTCCCA---TTGTTATTTCAAGTTATCAGCATGTCAGTACTCGGGAAATCTCATCAAGTGTTTAACAGTGCATACCTTACTGACTCATTATTTATTTCAATTTAATCTTTCTTATTTTCATTCAACTTTTTTCTCAGTAATATATGACTTTTTCAAGTTTTTTATTTTCT----AATGCATTTCTCCAAATAGCAGCCATAACCCTTATATGCCCTCTTTCAATGACAACAACAAAAATGTGCTAGGCTTTGTGGAAGAAAATAATTATACCAATTTAAGAAGGAGAAAATTGATGTACTGATAAACAAATGGGCATCTTAGGATCATGTTTCTCACAAGTAAAGCAGTTCCAGAAATTCCTAGGACCCTAATGGGTTTTATTCTAAATAGGTTAAACACACCACTTAAAAAATTGTTTTCTGCAGTTCTCTAATATTGCTTACAATTGTCCATATTTCTGTGTTTAT--ACTTGCCCCttttttttttt i chlSab2.chr4 C 0 I 5 s calJac3.chr2 47257891 722 - 204313951 CCCCATAAATCTAAATTTCATCAATCTTTATTTAAATGACTCTATACAATTTCTTCTTGTATTATATTAAAAATTGCAGATGCATTGCTTTTTGCTTTTTTCTATTAATTCTTTCCTATT-CATAGTGTCTATTAGTTTCCC-TTTTTCTTCCataaaataaataaaaattttaGTATCAGAGTCTATAATATATTA---CTTATTCCCAGCCAT---CAACATTTTAAGAATTCAGATTGACC-TTTCTCCCG---TTCTTATTTCAAGTTATCAGCATGTCAATAATTGGGAAATCTCATCAAGTGTTAAACAGTTCATACCTTACTGACTCATTCTTTATTTCAATTTAATCTTTCTTATTTTCATTCAACTTGTTTCTCAGTA--ACATAACTTTTTCAAGCTTTTTATTTTCTAATGAATGCATTTCTCCAAATAGCAACCATAACCCTTATATGCCCTTTTTCAATGACAACAGCAAAAATGTGCTAGGCTTCTTGGAAGAAAATAATTATACCAATTTCAGAAGGAGAAAATTGATGTACTGTTAAACAAATGGCCATCTTAAGATCATGTTGCTCACAAGTAAAGCAGTTCCAGAAATTCCTAGGATCCTAGAGGGTTTTATTCTAAATAGGTTAAACATATCACTTTAAAAATTGTTTTTTACGGTTCTCTAAAATTGCTTACAATTGTCCATGTTTCCATGTTTCT--ACTTGCCCAAtttttttttt i calJac3.chr2 C 0 I 8 s canFam3.chr4 23971880 665 - 88276631 CTCTGTAAACCTAAATTTCATAAATCATCCTTTAAATAGGTCTATGGAACTTCCCCTAG-----TTTTAATAATTGCAGATAAAC--CTTTCTTC-CA-------------TTTCCTATTGCTTCTGGTCTGTTGCTCTCCCTTTTTTCTTCCAGAAGATAAATAAAAATTCTAGTATCAGATTCTATGATATATTATTTCTTACTCACAACCTCCCACAACATTTTAAGGATTCAAATTGACCTTTTCTCCCATTCTTCTTATTTCAAGTTACCAGTATGTCAATACCTGTGAAATCTCATCAAGAATTTAATAGTCCATACCCTACTGACTCATTCTTTATTTCAATTTAACCTTCCTTATTCTCATTCAATTTTTTT---AGTA--ATATAACTTCTTCAAGCATTTTACCCTCT----AACTCATTTCTCCAAATAGCAGCTGTAACCCATACTTGCCCTCATTCAGCA--AATAAATAAATTGCACTAACTTTCTT-TAAACAAATAATTATATCAATTTGATGATACCAAATCTGATGTCCTCATAAACAAATGAG-GCCTTACAATCATGCTCCTTACAAGTGGAGCAAAGTTGGGAATCCCAGGGGCCCTCCTGTGCTTTATTCTGAACAAGCCAAAC----------------TTTTTTTT----TTTTCTACTATT------AAGGG-----------ATGTTTTC--CCCCATAGTTTTTACTTTTT i canFam3.chr4 I 207 C 0 a score=42629.000000 s hg38.chr1_KI270765v1_alt 98107 20 + 185285 atggagttttgctgttgttg s panTro4.chr5 117719795 20 - 182651097 gtggagttttgctgttgttg i panTro4.chr5 I 2 C 0 s ponAbe2.chr5 48794022 20 + 183952662 atggagttttgctgttgttg i ponAbe2.chr5 I 1 C 0 s nomLeu3.chr12 54712549 20 + 109391073 gtggagttttgctgttgttg i nomLeu3.chr12 I 1 C 0 s macFas5.chr6 49890528 20 + 181584905 atggagtttcgctcttgttg i macFas5.chr6 I 6 I 12 s papAnu2.chr6 46561076 20 + 174439528 atggagtttcgctcttgttg i papAnu2.chr6 I 5 I 12 s chlSab2.chr4 46906969 20 + 91010382 atggagtttcgctcttgttg i chlSab2.chr4 I 5 I 12 s calJac3.chr2 47258621 20 - 204313951 acaaagttttgctcttgttg i calJac3.chr2 I 8 C 0 s canFam3.chr4 23972545 12 - 88276631 -----GTTTAGATTTTG--- i canFam3.chr4 C 0 C 0 e rheMac3.chr6 48567337 366 + 180491593 I a score=32085.000000 s hg38.chr1_KI270765v1_alt 98127 8 + 185285 cccaggct s panTro4.chr5 117719815 8 - 182651097 cccaggct i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48794042 8 + 183952662 cccaggct i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54712569 8 + 109391073 cccaggct i nomLeu3.chr12 C 0 C 0 s rheMac3.chr6 48567703 8 + 180491593 cccaggct i rheMac3.chr6 I 366 C 0 s macFas5.chr6 49890560 8 + 181584905 cccaggct i macFas5.chr6 I 12 C 0 s papAnu2.chr6 46561108 8 + 174439528 cccaggct i papAnu2.chr6 I 12 C 0 s chlSab2.chr4 46907001 8 + 91010382 cccaggct i chlSab2.chr4 I 12 C 0 s calJac3.chr2 47258641 8 - 204313951 cccaggct i calJac3.chr2 C 0 C 0 s canFam3.chr4 23972557 8 - 88276631 CCCATGTT i canFam3.chr4 C 0 I 83 a score=762995.000000 s hg38.chr1_KI270765v1_alt 98135 264 + 185285 ggagt------------gtagtggcgtgatcttggctcactgcaacctccacctcccaggttcaagcaattcttctgcctcagccttcttagtagctgggattacaggtgcgtgccaccacacctggctaattttttgtagttttagtagagacggggtttcaccatgt-tggccaggctggtctcgaactcctgacctcaggtgatccacccgccttggcctcccaaagtgctgggattacaggcatgagccactgctcccggccTTATACTTGCA s panTro4.chr5 117719823 264 - 182651097 ggagt------------gcaatggcatgatcttggctcactgcaacctccacctaccaggttcaagcaattcttctgcctcagctttctgagtagctgggattataggtgcgtgccaccacacctggctaattttttgtatttttagtagagacggggtttcaccatgt-tgggcaggctggtctcgaactcctgacctcaggtgatccacccgccttggcctcccaaagtgctgggattacaggcatgagccactgcacccagccTTATACTTGCC i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48794050 276 + 183952662 ggagcccaggctggatggcaatggcgtgatcttggctcactgcaacctccacctcccaggttcaagcaattcttctgcctcagccttctgagtagctgggattataggtacgtgccaccacacctggctaattttttgtatttttagtggagacggggtttcaccatgt-tgggcaggctggtctcgaactcctgaccttaggtgatccacccgacttggcctcccaaagtgctgggattacaggcgtgagccattgcgcctggccTTATACTTGCC i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54712577 275 + 109391073 ggggcccaggctggagtacaattgcgtgatcttgcctcactgcaacctccacctcccaggttcaagcaattcttctacctcagccttctgagtagctgggattacaggtgcgtgccactacacctggctaattttttgta-ctttagtagaaacagggtttcaccatgt-tggccaggctggtctcgtactcctgacctcaggtgatccaccagccttggcctcccaaagtgctgggattacaggcgtgagccactgcgcccggccTTATACTTGCC i nomLeu3.chr12 C 0 C 0 s rheMac3.chr6 48567711 264 + 180491593 ggagt------------acagtggcttgatcttggttcactgcaacatctgcctcccaggttcaagcaattcttctgcctcagccttctgagtagctgggattacaggtgcatgccaccacacctggctaattttttgtatttttagtagaggcagggtttcaccatgt-tggccaggctggtctcgaattcctgacctcaggtgatccacccgccttggcctcccaaagtgctgggattacagacgtgagccaccaggcccagccTTATACTTGCC i rheMac3.chr6 C 0 C 0 s macFas5.chr6 49890568 264 + 181584905 ggagt------------acagtggcttgatcttggttcactgcaacatctgcctcccaggttcaagcaattcttctgcctcagccttctgagtagctgggattacaggtgcatgccaccacacctggctaattttttgtatttttagtagaggcagggtttcaccatgt-tggccaggctggtctcgaattcctgacctcaggtgatccacccgccttggcctcccaaagtgctgggattacagacgtgagccaccgggcccagccTTATACTTGCC i macFas5.chr6 C 0 C 0 s papAnu2.chr6 46561116 264 + 174439528 ggagt------------accgtggcttgatcttggctcactgcaacatctgcctcccaggttcaagcaattcttctgcctcagccttctgagtagctgggattagaggtgcatgccaccacacctggctaattttttgtattttcagtagaggcagggtttcaccatgt-tggccaggctggtctcgaattcctgacctcaggtgatccacccgccttggcctcccaaagtgctgggattacaggcgtgagccaccgggcccagccttatacttgcc i papAnu2.chr6 C 0 C 0 s chlSab2.chr4 46907009 264 + 91010382 ggagt------------agagtggcttgatcttgactcactgcaacatctgcctcccaggttcaagcaattcttctgcttcagccttctgagtagctgggattacaggtgcatgccaccacacctggctaattttttgtatttttagtagaggcagggtttcaccatgt-tggccaggctggtctcaaattcctgacctcaggtgatccacccgccttggcctcccaaagtgctgggattacaggcgtgagccaccgtgcccagccTTATACTTGCC i chlSab2.chr4 C 0 C 0 s calJac3.chr2 47258649 264 - 204313951 ggagt------------gcagtggcacaatcttggctcactgcaacctcca-ctcctacattcaagtgattcttcctcttcagctttttaagtagctgagattacaggtgcccatcaccacacccagctaattttttgtatttttagtagagatggggttccaccatgtgtggccaggccagtgtcaaactcctgacctcaggtgattcccccgccttggcctcccaaagtgctgggattataggcatgagccaccacacctggccTTATGCTTGCC i calJac3.chr2 C 0 I 9346 e canFam3.chr4 23972565 83 - 88276631 I a score=173379.000000 s hg38.chr1_KI270765v1_alt 98399 62 + 185285 CACTTTTTAATTCTAAGAccttgctactcagtgagggatcctgggactaataccatcagctt s panTro4.chr5 117720087 62 - 182651097 CACTTTTTAATTCTAAGAActtgctactcaatggaggatcctgggaccaataccatcagcat i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48794326 62 + 183952662 CACTTTTTAATTCTAAGAccttgctactcaatgaaggatcctgggaccaataccatcagctt i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54712852 62 + 109391073 CACTTTTTAATTCTAAGAccttgctactcagtgagggatcctgggactaataccatcagctt i nomLeu3.chr12 C 0 C 0 s rheMac3.chr6 48567975 62 + 180491593 CATTTTTTGATTCTAATActttgctacacaatgagggattctgggaccaataccatcagctt i rheMac3.chr6 C 0 C 0 s macFas5.chr6 49890832 62 + 181584905 CATTTTTTGATTCTAATActttgctacacaatgagggattctgggaccaataccatcagctt i macFas5.chr6 C 0 C 0 s papAnu2.chr6 46561380 62 + 174439528 cactttttgattctAATACTTTGCTACACAATGAGGGATTCTGGGACCAATACCATCAGCTT i papAnu2.chr6 C 0 C 0 s chlSab2.chr4 46907273 62 + 91010382 CACTTTTTGATTCTAATActttgctacacaattagggattctgggaccaataccatcagctt i chlSab2.chr4 C 0 C 0 s calJac3.chr2 47268259 62 - 204313951 CACTTTTTAATCCTAAGAActtgctaatcaatgagagatcctgggacccatagcatcagctt i calJac3.chr2 I 9346 C 0 e canFam3.chr4 23972565 83 - 88276631 I a score=1754668.000000 s hg38.chr1_KI270765v1_alt 98461 524 + 185285 gacttgaggccctctttgaaagc---agactcagaatctgtaatttatcaggatccccaggtaatttgtatgtgcagtctagtttgGTAGATCTGCTCTGGCAGACTGGAAGACTCTTCTATCTGCCTCATGTAAGGTGCAGGTGACATAATTAGGTAATCAAGC--AAAAGATCACATATTTTAATAAGAAAG---AGACACTGGCTATTATTTTGAGTGGCAAAACAGGTTATTCAGTCCCAGTTTAAAATGGAAATGACAGAGACCAAGATGAAGATTTTTAATTTGAGATGTGCCTGCGATGCAATTACATTTGCTGAATGAAACTGCTTCAGTAATTAGATGCAGGTTTCTTCTCTCTTCTTTTTGAGATGTAAAGAAGACACAATAGACTCATGGAACTTAAAGAACTAGACGCCAGCTAACAAAACA-----TGCTATCCAGGCTCTTTCGTTTCACCATATTGCTTTCTTGAAAACATAGGACAGTGCCAGTTTAGCACTGAAAAAAA-TCAGTTCTCCTAATTCTAAAA s panTro4.chr5 117720149 525 - 182651097 gacttgagggcttgtttgaaagc---agactcagaatctgcaatttatcagggtccccaggtaatttgtatgtgcagtctagtttgGTAGATCTGCTCTGGCAGACTGGAAGACTCTTCTATCTGCCTCATGTAAGGTGCAGGTGACATAATTAGGTAATCAAGC--AAAAGATCACATTTTTTAATAAGAAAG---AGACACTGGCTATTATTTTGAGTGGCAAAACAGGTTATTCAGTCCTAGTTTAAAATGGAAATGACAGAGATCAGGATCAAGATTTTTAATTTGAGATGTGCCTGCGATGCAATTACATTTGCTGAATGAAACTGCTTCAGTAATTAGATGCAGGTTTCTTCTCTCTTCTTTTTGAGATGTAGAGAGGACACAATAGGCTCATGGAACTTAAAGAACTCGACACCAGCTAACAAAACA-----TGCTATCCAGCCTCTTTCATTTCACCATATTGCTTTCTTGAAAACATAGTACAGTGCCAGTTTAGCATTGAAAAAAAATCAGTTATCCTAATTCTAAAA i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48794388 523 + 183952662 gacttgagggcttgtttgaaagc---agactcagaatctgcaatttatcaggatccccaggtaatttgtatgtgcagtctagtttgGTAGATCTGCTCTGGCAGACTGGAAGACTCTTCTATCTGCCTCACGTAAGGTGCAGGTGACATAATTAGGTAATCAAGC--AAAAGATCACATTTTTTAATAAGAAAG---AGACACTGGCCATTATTTTGAGTGGCAAAACAGGTTATTCAGTCCCAGTTTAAAATGGAAATGACAGAGACCAAGATCAAGATTTTTAATTTGAGATGTGCCTGCGATGCAATTACATTTGCTGAATGAAACTGCTTCAGTAATTAGATGCAGGTTTCTTCTCTCTTCTTTTTGAGATGTAGAGAGGACACAATAGGCTCATGGAACTTAAAGAACTAGACACCAGCTAACAAAACA-----TGCTATCCAGCCTCTTTCATTTCACCATATTGCTTTCTTGAAAACATAGTACAGTGCCAGTTTAGCATTGAAAAAA--TCAGTTCTCCTAACTCTAAAA i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54712914 524 + 109391073 gacttgagggcctgtttgaaagc---agactcagaatctgcaatttatcaggatccccaggtaatttgtatgtgcagtctagtttgGTAGATCTGCTCTGGCAGACTGGAAGACTCTTCTATCTGCCTCACGTAAGATGCAAGTGATATTATTAGGTAATCAAGT--GAAAGATCACATTTTTCAATAAGAAAG---AGACACTGACTATTATTTTGAGTGGCAAAACAGGTTATTCAGTCCCAGTTTAAAATGGAAATGACAGAGACCAAGATCAACAGTTTTAATTTGAGATGTGCCTGCGATGCAATTACATTTGCTGAATGAAACTGCTTCACTAATTAGATGCAGGTTTCTTCTCTCTTCTTTCTGAGATGTAGAGAGGACGCAATAGACTCATGGAACTTAAAGAACTAGACACCAGCTAACAAAACA-----TGCTAACCAGACTCTTTCATTTCACCATATTGCTTTCTTGAAAACATAGGACAGTGCCAGTTTAGCACTGAAAAAAA-TCAGTTCTCCTAATTCTAAAA i nomLeu3.chr12 C 0 C 0 s rheMac3.chr6 48568037 518 + 180491593 gacctgagggcttgttcaaaagc---agactcagaatctgcagtttatcaggatccccaggtaatttgtacgtgcaGTCTACTTTGGTAGATCTGCTCAGGCAGACTGGAAGACTCTTCTATCTGCCTCATGTAAGGTGCAGGTGACATAATTAGGTAATCAAGC--AAAAGATCACATTTTTTAATGAGAAAG---AGACACTGGCTATTATTTTGAGAGGCAAAACCGGTTATTCAGTCCCAG--TAAAATGAAGATGACAG---CCAAGATCAAGATTTTTCATTTGAGATGTGCCTGCGGTACAATTACATTTGCTGAATGAAACTGCTTCATTAATTAGATACAGGTTTCTTCTCTCTTCTTTTTGAGATGTAGAGAGGACACAATAGACTCATGGAACTTAAAGAACTAGATGCCAGCTAACAAAAGA-----TGCTATCCTGCCTCTTTCATTTCACCATATTGCTTTCTTGAAAACATAGTACAGAGTCAGTTTAGCGTTGAAAAAA--TCCATTCTCCTAATTCTAAAA i rheMac3.chr6 C 0 C 0 s macFas5.chr6 49890894 518 + 181584905 gacttgagggcttgttcaaaagc---agactcagaatctgcagtttatcaggatccccaggtaatttgtacgtgcaGTCTACTTTGGTAGATCTGCTCAGGCAGACTGGAAGACTCTTCTATCTGCCTCATGTAAGGTGCAGGTGACATAATTAGGTAATCAAGC--AAAAGATCACATTTTTTAATGAGAAAG---AGACACTGGCTATTATTTTGAGAGGCAAAACCGGTTATTCAGTCCCAG--TAAAATGAAGATGACAG---CCAAGATCAAGATTTTTCATTTGAGATGTGCCTGCGGTACAATTACATTTGCTGAATGAAACTGCTTCATTAATTAGATACAGGTTTCTTCTCTCTTCTTTTTGAGATGTAGAGAGGACACAATAGACTCATGGAACTTAAAGAACTAGATGCCAGCTAACAAAAGA-----TGCTATCCTGCCTCTTTCATTTCACCATATTGCTTTCTTGAAAACATAGTACAGAGTCAGTTTAGCGTTGAAAAAA--TCCATTCTCCTAATTCTAAAA i macFas5.chr6 C 0 C 0 s papAnu2.chr6 46561442 520 + 174439528 GACTTGAGGGCTTGTTCAAAAGC---AGACTCAGAATCTGCAGTTTATCAGGATCCCCAGGTAATTTGTACGTGCAGTCTACTTTGGTAGATCTGCTCAGGCAGACTGGAAGACTCTTCTATCTGCCTCATGTAAGGTGCAGGTGACATAATTAGGTAATCAAGC--AAAAGATcacattttttaatgagaaag---agACACTGGCTATTATTTTGAGAGGCAAAACCGGTTATTCAGTCCCAGTTTAAAATGAAGATGACAG---CCAAGACCAAGATTTTTCATTTGAGATGCGCCTGCGGTACAAttacatttgctgaatgaaactGCTTCATTAATTAGATACaggtttcttctctcttctttttgagATGTAGAGAGGACACAATAGACTCATGGAACTTAAAGAACTAGATGCCAGCTAACAAAAGA-----TGCTATCCTGCCTCTTtcatttcaccatattgctttCTTGAAAACATAGTACAGAGTCAGTTTAGCGTTGAAAAAA--TCCATTCTCCTAATTCTaaaa i papAnu2.chr6 C 0 C 0 s chlSab2.chr4 46907335 520 + 91010382 gacttgagggtttgttcaaaagc---agactcagaatctgcagtttatcaggatccccaggtaatttgtacgcgcaGTCTACTTTGGTAGATCTGCTCAGGCAGACTGGAAGACTCTTCTATCTGCCTCACGTAAGGTGCAGGTGACATAATTAGGTAATCAAGC--AAAAGATCACATTTTTCAATGAGAAAG---AGACACTGGCTATTATTTTGAGAGGCAAAACAGGTTATTCAGTCCTAGTTTAAAATGAAGATGACAG---CCAAGATCAAGATTTTTCATTTGAGATGTGCCTGCGGTACAATTACATTTGCTGAATGAAACTGCTTCATTAATTAGATACAGGTTTCTTCTCTCTTCTTTTTGAGATGTAGAGAGGACACAATAGACTCATGGAACTTAAAGAACTAGATGCCAGCTAACAAAAGA-----TGCTATCCTGCCTCCTTCATTTCACCATATTGCTCTCTTGAAAACATAGTACAAAGTCAGTTTAGCGTTGAAAAAA--TCCATTCTCCTAATTCTGAAA i chlSab2.chr4 C 0 C 0 s calJac3.chr2 47268321 525 - 204313951 gacttgagggcttgcttgaaagc---tgaattagaatctgcaatttattaaggtccctaggtaatttgtatgtgcagtctagtttgGCAGATCTGCTTTGGCAGACTGGAAGACTCTTCTATTTACCTCATGTACAGTGCAGGTAACAGAATTAGTTAATCAAGC-AAAAAGATCACATTTTTTACTGAGAAGG---AGACAGTGGCTATTATTTTGAGTGGCAAAACAGGTTATTCAGTCCCAGTTTAAAATGGAGATGACAGAGATCAAGATCAAGATTTTTAATTTGAGATGTGCCTGTGGTGCAATTACATTTGCTGAATGAAACTGCTTCAATAATTAGGTGCAGGCTTCTTCTCTCTTCTTTTCAAGATGTAGAGAGGATACAATAGACTCATAGAACTTAAAGAACTAGACACCAGCTAGCAAAACA-----TGCTATCCAGCCTCTTTTATTTCACCATATCACTTTCTTGAAAACCTTGTACAGAGCCAGTTTAGCATTGAAAACCA-GCAGTTCTCCTAATTCTAAAA i calJac3.chr2 C 0 C 0 s canFam3.chr4 23972648 531 - 88276631 aatttaaggttcccttctggagccattaaatcagaatccacaactcctcgggatcccagggt-attagtatgTGAAATCCACTTCAGCTGCACTGTTCTAGCAAACTAGAAGACTATTCTATCTCCTTCATATAAGTTGTATGTGACAAAATTAGTAAATCAGGCAAAAAAGATCACATTTCTTAATGAGAAGGAGCAGACACTGGCTATTATTTTTAGTGATGAAATGGGTTTTTCAGTCCCAATTAAAAATAGAGATGGCAGAGACTGAAACCAACATTTTTAATTCAAGGCTTGCTTATGATGCAATTACATTTCCTGAATGACGCTGCTTGAAAAATCAAATGTAGGTTTCTTCTTTCTTCTCCTTGAAGAGAAGGGAAAAAACAGTAGGTTTACAGAACTCAAAAAGTT-GCTACCAAAAAAAAAAAAAAAAGTTGCTA-CCGACTTCCTTCACCCCACCATATTGTTTTCTTG-TAACATTGCACAGAGCCAG-TTAGCGTTCAAAAAA--TGAGGTCTCCCAATTCTAAAA i canFam3.chr4 I 83 C 0 a score=429417.000000 s hg38.chr1_KI270765v1_alt 98985 217 + 185285 AGAGGAGACAGCCAGGCGTGGTGGGTCactaaaa--atacaaaaaattagctgggcatggtggtgcatgcctgtaatcccagctacttgggaggctgaggcaaaagaatcacttaaacccgggaggtgaaggttgcagtgtgctgagatagcgccattgcactctcgcctgggcaacaagagcgaaactccgtctcaagaaaaaaaa-----aaaaa-aaGAGAG s panTro4.chr5 117720674 215 - 182651097 AGAGGAGACAGCCAGGCGTGTTGGGTCactaaaa--atacaaaaaattagctgggcatggtggtgcatgcctgtaatcccagctacttgggaggctgaggcaaaagaatcacttaaacccgggaggtgaaggttgcagtgtgctcagatagcaccattgcactcccgcctgggcaacaagagtgaaactccatctcaagaaaaaaaa-----agaaa---CAGAG i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48794911 218 + 183952662 AGAGGAGACAGCCAGGTGTGGTGGGTCactaaaa--acacaaaaaattagctgggcatggtggtgcatgcctgtaatcccagctacttgggaggctgaggcaaaagaatcgcttaaacctgtgaggtgaagattgcggtgtgctcagatagcgccattgcactcctgcctgggcaacaagagcgaaactccgtctcaagaaaaaaaa-----aaaaaaaaGAGAC i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54713438 213 + 109391073 AGAGGAGACAGCCAGGCGTGGTGGGTCactaaaa--atacaaaaaattagctgggcatggtggtgcatgcctgtaatcccagctacttgggaggctgaggcaaaagaatcacttaaacctgggaggtgaaggttgcagtgtgctaagatagcgccattgcactcccgcctgggcaacaagagtgaaactccgtctcaagaaaaaaaa-----aaaGA-----GAG i nomLeu3.chr12 C 0 C 0 s rheMac3.chr6 48568555 222 + 180491593 AAAGGAGACAGCCAGGCATGGTGGGTCCctaaaaacacacaaaaaaatagctgggcgtggtggtgcacgcctgtaatcccagctactcgggaggctgaggcaaaagaatcgcttaaacccgagaggcgaaggttgcattatgctgagatagtgctattgcactccagcctgggcaacaagagtgaaactctatctcaagaaataaaaaaaaGAGAGA---GAGAG i rheMac3.chr6 C 0 C 0 s macFas5.chr6 49891412 222 + 181584905 AAAGGAGACAGCCAGGCATGGTGGGTCCctaaaaacacacaaaaaaatagctgggcgtggtggtgcatgcctgtaatcccagctactcgggaggctgaggcaaaagaatcgcttaaacccgagaggcgaaggttgcattatgctgagatagtgctattgcactccagcctgggcaacaagagtgaaactctatctcaagaaataaaaaaaagagaga---gagag i macFas5.chr6 C 0 C 0 s papAnu2.chr6 46561962 221 + 174439528 aaaGGagacagccaggcatggtgggtccctaaaaacacacaaaaaaatagctgggcgtggtggtgcatgcctgtaatcccagctacttgggaggctgaggcaaaagaatcgcttaaacccgagaggtgaaggttgcattgtgctgagatagtgccattgcactccagcctgggcaacaagagtgaaactctatctcaagaaataaaaaaaa-agaga---gagag i papAnu2.chr6 C 0 C 0 s chlSab2.chr4 46907855 217 + 91010382 AAAGGAGACAGCCAGGTATGGTGGGTCCctaaaaacacacaaaaaaatagctgggcatggtggtgcatgcctgtaatcccagctactcgggaggcggaggcaaaagaatcgcttaaacccgagaggcaaaagttgcattgtgctgagatagtgccattgcactccagcctgggcaacaagagtgaaactctatctcaagaaataaaa-----aaaGA---GAGAG i chlSab2.chr4 C 0 C 0 s canFam3.chr4 23973179 16 - 88276631 -----------------------------------------------------------------------------------------------CAAGTTAAAAGA------------------------------------------------------------CCTG------------------------------------------------------ i canFam3.chr4 C 0 C 0 e calJac3.chr2 47268846 0 - 204313951 C a score=2579880.000000 s hg38.chr1_KI270765v1_alt 99202 813 + 185285 AGAGAGAGAGAAACTGTAATTTCATTTCAGAAGTTTTATAGGGTACTATTTCCAATTCTTTTTTTCTTACTCCATTAAAGTGTAATTAGCAGTATGTGAAAATTTCCACTTTATCCTCAATCAGAAGCCTCTC--CTTC--------CAATTAGC----------------------------------ATATAT-TTTTTCTATTAACTTTGTAAAGTGGGATTCTTGTTTTATACATACCCCTGGAAAGTATACTTAAACTGTGAGACCCTGGGATTTTATATTTCCAAATAGAAGATACCATCCTCTTGTATCACAAAATGTACCTAAGATGGTTTGGATTATATTTAAATATTCTTGAATGAAATAGACTTACTGACTGAAGCCAATTATTA-----------TATTTTTCCACACCAAAATAAATGCAATAGGAAAAGATGACAGTTCTATGTAGTATTCCTGCTTCCATATTGCACAAATTAGAAACATACATATTCCATTATG-TTACAGGGTCTAGGGCTTTgggaggacaaggctgcaggcagccgagattgtgccgctgcactccagcctgggcgacagagtgagatcttttctcaataataataataaaagt---aaaaagaaaTATAATATTTAATCAATATATGCACACACATGGGTTTATCATGACACACACG-ACATGTGTGTACAGTGAAAAAAA------TGAGTAAATCTAGAAACCTGTATTGCCTCAATAGCTAGCTAAGTACTTCAATATGCATG--TTTATTTCAACAATTTTGTGTTAAGCTTCAGTGGTAAATAAGCAGAGTACACTGACCATAATGAATACTTCTTTTGATG----AGGGTTATCACTACACAATTAAAAT s panTro4.chr5 117720889 814 - 182651097 AGAGAGAGACAAACTGTAATTTCATTTCAGAAGTTTTATAGGGTACTATTTCCAATTCTTTTTTTCTTACTCCATTGAAGTGTAATTAGCAGTATGTGAAAATTTCCACTTTATCCTCAATCAGTAGCCTCTC--CTTC--------CAATTAGC----------------------------------ATATTT-TTTTTCTATTAATTTTGTAAAGTGGGATTCTTGTTTTACACATACCCCTGGAAAGTATACTTAAACTGTGAGACCCTGGGATTTTATATTTCCAAATAGAAGATACCATCCTCTTGTATCACAAAATGTACTTAAGATGGTTTGGACTATATTTAAATATTCTTGAATGAAATAGACTTAGTGATTGAAGCCAATTATTA-----------TATTTTTCCACACCAAAATAAATGCAATAGGAAAAGATGACAGTACTATCTAGTATTCCTGCTTCAATATTGCACAAATTAGAAACATACATATTCTGTTATG-TTATAGGGTCTAGGGCTTTCggaggacaaggctgcagtcagctgagatcgtgccactgcactccagcctgggcgacagagtgagaccctttctcaataatagtaataaaagt---aaaaagaaaTATAATATTTAATCAATATATGCACACACATGGGTTTATCATGACACACATG-ACATTTGTGTACAGTGAAAAAAA-----ATGAGTAAATCTAGAAACCTGTATTGCCTCAATAGCTAGCTGAGTACTTCAATATGCATG--TTTATTTCAACAATTTTGTGTTAAGCTTCAGTGGTAAATAAGCAGAGTACACTGACCATAATGAATACTTCTTTTGATG----AGGGTTATCACTACACAATTAAAAT i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48795129 813 + 183952662 AGAGAGAGACAAACTGTAATTTCATTTCAGAAGTTTTATAAGGTACTATTTCCAATTCTTTTTTTCTTACTCCATTGAAGTGTAATTAGCAGTATGTGAAAATTTCCACTTTATCCTCAATCAGTGGCCTCTC--CTTC--------CAATTAGC----------------------------------ATATTT-TTTTTCTATTAACTTTGTAAAGTGGGATTCTTGTTTTACACATATCCCTGGAAAGTATACTTAAACTGTGAGACCCTGGGATTTTGTATTTCCAAATAGAAGATACCATCCTCTTGTATCACAAAATGTACTTAAGATGGTTTGGATTATATTTAAATATTCTTGAATGAAATAGACTTAGTGACTGAAGCCAATTATTA-----------TATTTTTCCATACCAAAATAAATGCAATAGGAAAAGATGACAGTTCTATCTAGTATTCCTGCTTCAATATTGCACAAATTAGAAACATACATATTCTGTTATG-TTACAGGGTCTAGGGCTTTgggaggacaaggctgcagtcagccgagatcgtgccactgcactccagcctgggtgacagagtgagatcctttctcaataataataataaaagt---aaaaagaaaTATAATATTTAATCAATATATGCACACACATGGGTTTTTCATGACACACATG-ACATGTGTGTACAGTGAAAAAAA------TGAGTAAATCTAGAAACCTGTATTGCCTCAATAGCTAGCTGAGTACTTCAATATGCATG--TTTATTTCAACAATTTTGTGTTAAGCTTCGGTGGTAAATAAGCAGAGAACACTGACCATAATGAATACTTCTTTTGATA----AGGGTTATCACTACACAATTAAAAT i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54713651 777 + 109391073 AGAGAGAGACAAACTCTAATTTTATTTCAGAAGTTTTATAGGGTACTATTTCCAATTCTTTTTTTCTTACTCCATTAAAGTGCAATTAGCAGTATGTGAAAATTTCCACTTTATCCTCAATCAGTAGCCTCTC--CTTC--------CAATTAGC----------------------------------ATA--T-TTTTTCTATTAACTTTGTAAAGTGGAATTCTTGTTTTACACATACCCCTGGAAAGTATACTTAAACTGTGAGACCCTGGGATTTTATATTTCCAAATAGAAGATACCATCCTCTTGTATCACAAAATGTACTTAAGATGGTTTGGATTATATTTAAATATTCTTGAATGAAATAGACTTAGTGACTGAAGCCAATTATTA-----------TTTTTTTCCACACCAAAATAAATGCAATAGGAAAAGATGACAGTTCTATCTAGTATTCTTGCTTCAATATTGCACAAATTAGAAACATACATATTCTGTTATG-TTACAGGGTCTAGGGCTTTGGGAGGACAAGGCTTCAGGCAGCCA--------------------------------TAAGTGAGATCTTTTCTCaataataataataaaagt---aaaaagaaat---atatttaatcaataTATGCACACACATGGGTTTGTCGTGACACACATG-ACATGTGTGTACAGTGAAAAAAA-----GTGAGTAAATCTAGAAACCTGTATTGCCTCAATAGCTTGCTAAGTACTTCAATATGCATG--TTTATTTCAACAATTTTGTGTTAAGCTTCAGTGGTAAATAAGTGGAGTACACCGACCATAATGAATACTTCTTTTGATG----AGGGTTATCACTACACAATTAAAAT i nomLeu3.chr12 C 0 C 0 s rheMac3.chr6 48568777 819 + 180491593 AGACAGAGACAAACTATAATTTCATTTCAGAAGTTTTATAGGATACTATTTCCAA---TTTTTTTCTTACTTCATTAAAATGTAATTAGCAGTATGTGAAAATTTCCACTTTATCCTCCATCAGTAGCCTCTC--CTTCTAATTATACAATTAGT----------------------------------ATAAAT-TTTTTCTATTAACTTTGTGAAGTGGGATTCTTGTTTTATACATACCCCTGGAAAGTATACTTAAACTGTGGGACCCTGGGATTTTATATTTCCAAATAGAAGATACGATCCTTTTGTATCACAAAATGTACTTAAGATGTTTTGGATTATATTTAAATATTCTTGAATGAAATAGACTTAGTGACTGAAGCCAATTATTA-----------TATTTTTCCACACCAAAATAAATGCAATAGGAAAAGATGACAGTTCTATCTAGTATTCCTGCTTCAATATTGCACAAAGTAGAAACATACATATTCTGTTATG-TTACAGGGTCTAGGGCTTTgggagaacaaggctgaagtcagctgagattgtgccactgcactccagcctgggtgagagagtgagaccctttctcaataataataagaaaagta--aaaaagaaaTATAATATTTAATAAAGATATGCACACACATGGGTTTATCATGACACACATGAACATGTGTGTACAGTTCAAAAAA------TGAGTAAATCTAGAAACCTGTATTGCCTCAATAGCTAGCTGAGTACTTCAATATGCATG--TTTA-TTCAACAATTTTGTGTTAAGCTTCAGTGGTAAATAAGCAGAGTACACTGACTGTAATGAATACTTCTTTTGATG----AGGATTATCACCACACAATTGAAAT i rheMac3.chr6 C 0 C 0 s macFas5.chr6 49891634 819 + 181584905 agacagagaCAAACTATAATTTCATTTCAGAAGTTTTATAGGATACTATTTCCAA---TTTTTTTCTTACTTCATTAAAATGTAATTAGCAGTATGTGAAAATTTCCACTTTATCCTCCATCAGTAGCCTCTC--CTTCTAATTATACAATTAGC----------------------------------ATAAAT-TTTTTCTATTAACTTTGTGAAGTGGGATTCTTGTTTTATACATACCCCTGGAAAGTATACTTAAACTGTGGGACCCTGGGATTTTATATTTCCAAATAGAAGATACGATCCTTTTGTATCACAAAATGTACTTAAGATGTTTTGGATTATATTTAAATATTCTTGAATGAAATAGACTTAGTGACTGAAGCCAATTATTA-----------TATTTTTCCACACCAAAATAAATGCAATAGGAAAAGATGACAGTTCTATCTAGTATTCCTGCTTCAATCTTGCACAAAGTAGAAACATACATATTCTGTTATG-TTACAGGGTCTAGGGCTTTgggagaacaaggctgaagtcagctgagattgtgccactgcactccagcctgggtgagagagtgagaccctttctcaataataataacaaaagta--aaaaagaaaTATAATATTTAATAAAGATATGCACACACATGGGTTTATCATGACACACATGAACATGTGTGTACAGTTCAAAAAA------TGAGTAAATCTAGAAACCTGTATTGCCTCAATAGCTAGCTGAGTACTTCAATATGCATG--TTTA-TTCAACAATTTTGTGTTAAGCTTCAGTGGTAAATAAGCAGAGTACACTGACTGTAATGAATACTTCTTTTGATG----AGGATTATCACCACACAATTGAAAT i macFas5.chr6 C 0 C 0 s papAnu2.chr6 46562183 820 + 174439528 agacagagacaaactATAATTTCATTTCAGAAGTTTTATAGGATACtatttccaa---ttttgttcttacttcattaaaatgtaattagCAGTATGTGAAAATTTCCACTTTATCCTCCATCAGTAGCCTCTC--CTTCTAATTATACAATTAGT----------------------------------ATAAAT-TTTTTCTATTAACTTTGTGAAGTGGGATTCTTGTTTTATACATACCCCTGGAAAGTATACTTAAACTGTGGGACCCTGGgattttatatttccaaatagaAGATACGATCCTTTTGTATCACAAAATGTACTTAAGATGTTTtggattatatttaaatattcttgaaTGAAATAGACTTAGTGACTGAAgccaattatta-----------tatttttccacaCCAAAATAAATGCAATAGGAAAAGATGACCGTTCTGTCTAGTATTCCTGCTTCAATATTGCACAAAGTAGAAACATACATATTCTGTTATG-TTACAGGATCTAGGGCTTTGGGAGAACAAGGCTgaagtcagctgagattgtgccactgcactccagcctgggtgagagagtgagaccctttctcaataataataacaaaagta--aaaaagaaatataatatttaataaagatatGCACACACATGGGTTTATCATGACACACATGAACATGTGTGTACAGTTCAAAAAA------TGAGTAAATCTAGAAACCTGTATTGCCTCAAAAGCTAGCTGAGTACTTCAATATGCATG--TTTATTTCAACAATTTTGTGTTAAGCTTCAGTGGTAAATAAGCAGAGTACACTGACCGTAATGAATACTTCTTTTGATG----AGGGCTATCACCACACAATTGAAAT i papAnu2.chr6 C 0 C 0 s chlSab2.chr4 46908072 811 + 91010382 AGACAGAGACAAACTGTAATTTCATTTCAGAAGTTTTATAGGATATTATTTCCAA---TTTTTGTCTTACTTCATTAAAATGTAATTAGCACTATGTGAAAATTTCCACTTTATCCTCCATCAGTAGCCTCTC--CTTC--------CAATTAGT----------------------------------ATAAAT-TTTTTCTATTAACTTTGTGAAGTGGGATTCTTGTTTTATACATACCCCTGGAAAGTATACTTAAACTGTGGGACCCTGGGATTTTATATTTCCAAATAGAAGACACGATCCTTTTGTGTCACAAAATGTACTTAAGATGTTTTGGATTATATTTAAATATTCTTGAATGAAATAGACTTAGTGACTGAAGCCAATTATTA-----------TATTTTTCCACACCAAAATAAATGCAATAGGAAAAGATAACAGTTCTATCTAGTATTCCTGCTTCAATATTGCACAAAGTAGAAACATACATATTCTGTTATG-TTACAGGGTCTAGGGCTTTgggagaacaaggctgaagtcagctgagatcgtgccactgcactccagcctgggcaacagagtgagaccctttctcaataataa-agcaaaagta--aaaaagaaaTATAATATTTAATAAAGATATGCACACACATGGGTTTATCATGACACACATGAACATGTGTGTACAGTTCAAAAAA------TGAGTAAATCTAGAAACCTGTATTGCCTCAATAGCTAGCTGAGTACTTCAATATGCATG--TTTATTTCCACAATTTTGTGTTAAGCTTCAGTGGTAAATAAGCAGAGTACACTGACCTTAATGAATACTTCTTTTGATG----AGGGTTATCACTACACAATTGAAAT i chlSab2.chr4 C 0 C 0 s calJac3.chr2 47268846 819 - 204313951 AAAGGGAGACACACCGTAATTTCATTTCAAAAGTTTTATAGGGTACTATTTCCAATTATTTTTCTGTTACTTCATCAAAATATAATTAGCAGTATGTAAAAATTTCCACTTTATCCTCAATCAGTAGCCTCTC--CTTC--------CAATTAGT----------------------------------ATAT-T-TTTTTCTATTAA-TTTGTAAAGTGAGATTCTTGTTTTACACATACCCCTGGAAATCATACTTAAACACTGCGATCCTGGGATTTTACATTTCCAAAGAGAAAATACCATCCTCTTGTATCACAAAATGTACTTAAGATGGTTTAGGTTATATTCAAATATTCTTGAATGAAACAGATTTGGTGACATAAGTCAATTGTTA-----------AATTTTTCTGTACCAAAATAAATGTAATAAAAAAAGATGACAGTTTGATCTAGTATTCCTGCTCCAATATTGCACAAATTAGAAACATGCGTATTCTATTATG-TTACAGATTCTAGGGCTTTgggaggacaaggctgcagtcagccaagatcatgccactgcactccagcctgggt-acagagtgataacttttctcaaCtataataataatgatatttaaaagaaatataatatCTAACAAATATATGCACACATATGGGTTTATTATGACACATGAC-ATATGTGTGTATAGTGGAAAAAAAAAGAATGAGTAAATCTAGAAACCCTTATTGCCTGAATAGCTAGCTGAGTACTTCAATATGCATG--TTTATTTAAACAATTTTGTATTAAGCTTCAGTGGTAAATAAGCAGAATACACTGACCATAATGAATACTTTTTTTGATG----AGGGTTATCACTACACAATTAAAAT i calJac3.chr2 C 0 C 0 s canFam3.chr4 23973195 719 - 88276631 -------------CTGTGATTTTATTTCAGAAGTTTTATCGAATACTATTTACAATTCTTTTCTTTTTGCTTCATTAAAATCTGACTGACAATATTTTAAAACTTCCACTTTATTCCCAATCGGTAGCCTCTCTTCTTC--------TGATCAGCTTTTTtatatatatatatatatatatatatatatatatatatatatatatTAACTTGAGAAAATGAGATT------------------TTGGAAAGTATACTCAAACTTTGTGATGCTGAGATTTTATATTTTAAAAGTGAAGTTACTCTCCTCTTGCACCACAAAAAGTACTCAAGACAGCTTAGATTACATTTAAATGTTCCTGGATGAAATACGTTTGGTGACTGAAGGTGATTGTTATACAAACCATGTATTTTTCCATTCCAAATTAAAAGAAATGAAAGAAGATGACAGTTTAAACTAGTATTCCTGTTTCAATATTACAAAAATTAGGAGCATCCATCTTCTATTATATTTACAAGTTCCAAGGCTT-------------------------------------------------------------------CTCTTT------------------------AATTAGAAATAAAATAATTGATGAGTAAATAAA-------AGGT------------------GTGTGTGTGTGATAATGAAAGAA------TGGATAGATCTAGAAACCCAAATTGCCT-GATAGCTAGCTAAGTACTTCAAATAGCACACTTTTATTTCAATGACTTTGTATTAAGCTTCAGTGATAAATAAGTAGAGTACATGGAACATAATAGATAC-----TTGATGATTCAGGGTTAACACTACACAATAACAGT i canFam3.chr4 C 0 C 0 a score=7464.000000 s hg38.chr1_KI270765v1_alt 100015 3 + 185285 ATT s panTro4.chr5 117721703 3 - 182651097 ATG i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48795942 3 + 183952662 ATG i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54714428 3 + 109391073 ACG i nomLeu3.chr12 C 0 C 0 s rheMac3.chr6 48569596 3 + 180491593 ATG i rheMac3.chr6 C 0 C 0 s macFas5.chr6 49892453 3 + 181584905 ATG i macFas5.chr6 C 0 C 0 s papAnu2.chr6 46563003 3 + 174439528 ATG i papAnu2.chr6 C 0 C 0 s chlSab2.chr4 46908883 3 + 91010382 ATG i chlSab2.chr4 C 0 C 0 s canFam3.chr4 23973914 3 - 88276631 ATG i canFam3.chr4 C 0 C 0 e calJac3.chr2 47269665 0 - 204313951 C a score=658864.000000 s hg38.chr1_KI270765v1_alt 100018 371 + 185285 ACATAGTTggctgggcacgttggctcacacctataatcccagcactttgggaggccgaggcaggcagatcacctgaggatgggagttcaataccagcctgactaacatggagaaaccccttctctattaaaaatacaaaattaaccaggcgtggtggcacatgcctgtaatcccagctactcaggacgctgaggcaggagaatcacttgaacctgggaggcagaggttgtggtgagccgagatagcgccattgcactccagcctgggcaacaaaagcaaaactccgtctcaaaaaaaTATATAATAA-----TAAAtatatatatattatatataatcaatataaatataatatataataaatatataatatgtat s panTro4.chr5 117721706 294 - 182651097 ATATAGTTggctgggcacgttggctcacacctataatcccagcactttgggaggccgaggcaggtggatctcctgaggatgggagttccagaccagcctgac---catggagaaaccccgtctctattaaaaatacaaaattaaccaggcatggtggcacatgcctgtaatcccagctactcaggacactgaggcaggagaatcacttgagcccgggaggcagaggttgtggtgagccgaaatagtgccattgcactccaacctgggcaacaagagcaaaactccatctcaaaaaaa------------------------------------------------------------------------------- i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48795945 271 + 183952662 ATATAGTTggctgggcaagttggctcacacctataatcccagcactttgggaggccgaggcaggcggatcacctgaggatgggagttcaagaccagcctgaccaacatggagaaaccccgtctccattaaaaatacaaaattaaccaggcgtggtggtgcatgcctgtaatcccagctactcaggacgct--------------------------gaggcagaggttgtggtgagctgagatagcaccattgcactcccgcctgggcaacaagagcaaaactctgtctcaaaaaaa------------------------------------------------------------------------------- i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54714431 297 + 109391073 ATATAGTTggctgggcacattggctcacacctataatcccagcactttgggaggccgaggcaggcggatcacctgaggacgggagttcgataccagcctgaccaacatggagaaaccccgtctctattaaaaatacaaaattaaccaggcgtggtggcacatgcctgtaatcctagctactcaggacgctgaggcaggagaatcacttgaacccgggaggcagaggttgtggtgagccgagatagtgccattgcactccagcctgggcaacaagagcaaaactccgtctcaaaaaaa------------------------------------------------------------------------------- i nomLeu3.chr12 C 0 C 0 s rheMac3.chr6 48569599 302 + 180491593 ATATAGTTggctgggcacattggctcacacctataatcccagcactttgggaggccaaggcaggcggatcacctgagaacaggagttcaagaccagcctgaccaacatggagaaaccccatctctattaaaaatacaaaattaacc-agcatggtagcgcatgcttgtaatcccagctactcaagaggctgaggcaggagaatcacttgaacccgggaggcagaggttgtggtgagccgagatagagccattgtactccagcctgggcaacaagagcaaaattctgtctcaaaataa----taataa--------------------------------------------------------------------- i rheMac3.chr6 C 0 C 0 s macFas5.chr6 49892456 302 + 181584905 ATATAGTTggctgggcacattggctcacacctataatcccagcactttgggaggccaaggcaggcggatcacctgagaacaggagttcaagaccagcctgaccaacatggagaaaccccatctctattaaaaatacaaaattaacc-agcatggtagcgcatgcttgtaatcccagctactcaagaggctgaggcaggagaatcacttgaacccgggaggcagaggttgtggtgagccgagatagagccattgtactccagcctgggcaacaagagcaaaattctgtctcaaaaTAA----TAATAA--------------------------------------------------------------------- i macFas5.chr6 C 0 C 0 s papAnu2.chr6 46563006 329 + 174439528 ATATAGttggctgggcacattggctcacacctataatcccagcactttgggaggccaaggcaggcggatcacctgagaacaggagttcaagaccagcctgaccaacatggagaaaccccatctctattaaaaatacaaaattaacc-ggcatggtagcacatgcttgtaatcccagctactcaagaggctgaggcaggaggatcacttgaatccaggaggcagaggttgtggtgagccgagatagagccattgtactccagcctgggcaacaagagcaaaactctgtctcaaaataa----taataataataataataaatacatatcatatat------------------------------------------ i papAnu2.chr6 C 0 I 1017 s chlSab2.chr4 46908886 302 + 91010382 ATATAGTTggctggacacattggctcacacctataatcccagcactttgggaggccaaggcaggcggatcacctgagaacaggagttcaagaccagcctgaccaacatggagaaaccccatctctattaaaaatacaaaattaacc-ggcatggtagcacatgcttgtaatcccagctactcaggaggctgaggcaggagaatcacttgaacccaggaggcagaggttgtggtgagccgagatagaaccattgtactctagcctgggcaacaagagcaaaactctgtctcaaaaTAA----TAATAA--------------------------------------------------------------------- i chlSab2.chr4 C 0 I 2 e calJac3.chr2 47269665 0 - 204313951 C e canFam3.chr4 23973917 0 - 88276631 C a score=-1534.000000 s hg38.chr1_KI270765v1_alt 100389 7 + 185285 tatacaa s panTro4.chr5 117722000 2 - 182651097 -----aa i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48796216 2 + 183952662 -----ta i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54714728 5 + 109391073 --taata i nomLeu3.chr12 C 0 C 0 s rheMac3.chr6 48569901 2 + 180491593 -----ta i rheMac3.chr6 C 0 C 0 s macFas5.chr6 49892758 2 + 181584905 -----TA i macFas5.chr6 C 0 C 0 e calJac3.chr2 47269665 0 - 204313951 C e chlSab2.chr4 46909188 2 + 91010382 I e canFam3.chr4 23973917 0 - 88276631 C e papAnu2.chr6 46563335 1017 + 174439528 I a score=70562.000000 s hg38.chr1_KI270765v1_alt 100396 36 + 185285 ataataaatatatatattatatat----aATAAATATATC s panTro4.chr5 117722002 36 - 182651097 aTAataaatatatatattatatat----aataaatatatc i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48796218 34 + 183952662 ataataa--atatatattatatat----aataaatatatc i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54714733 40 + 109391073 ataataaatatatatattatatatatacaaaaaatataac i nomLeu3.chr12 C 0 C 0 s rheMac3.chr6 48569903 36 + 180491593 ataataaatatatatcatatatat----aataaatatatc i rheMac3.chr6 C 0 C 0 s macFas5.chr6 49892760 36 + 181584905 ATAATAAatatatatcatatatat----aataaatatatc i macFas5.chr6 C 0 C 0 s papAnu2.chr6 46564352 36 + 174439528 ataataaatatatatcatatatat----aataaatatatc i papAnu2.chr6 I 1017 C 0 s chlSab2.chr4 46909190 34 + 91010382 ATAATAAATATATATC--ATATAT----AATAAATATATC i chlSab2.chr4 I 2 C 0 e calJac3.chr2 47269665 0 - 204313951 C e canFam3.chr4 23973917 0 - 88276631 C a score=15083.000000 s hg38.chr1_KI270765v1_alt 100432 6 + 185285 ATATAG s panTro4.chr5 117722038 6 - 182651097 atatat i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48796252 6 + 183952662 atatat i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54714773 6 + 109391073 atatat i nomLeu3.chr12 C 0 C 0 s rheMac3.chr6 48569939 6 + 180491593 atatat i rheMac3.chr6 C 0 C 0 s macFas5.chr6 49892796 6 + 181584905 atatat i macFas5.chr6 C 0 C 0 s papAnu2.chr6 46564388 6 + 174439528 atatat i papAnu2.chr6 C 0 C 0 s chlSab2.chr4 46909224 6 + 91010382 ATATAT i chlSab2.chr4 C 0 C 0 s canFam3.chr4 23973917 6 - 88276631 ATAAAG i canFam3.chr4 C 0 C 0 e calJac3.chr2 47269665 0 - 204313951 C a score=1444499.000000 s hg38.chr1_KI270765v1_alt 100438 433 + 185285 ATGATATAGTTTAGAGTTAAATACTGACTGCTCTTGGGAACTTTGAGGTATTCTGAGGGATATAAATA--ACACGAAGAGAATAGCACATTGGCTTGAAGCAGATTAGAGTCTGCTACCTGCGTGAATACTTGTTTTTCATGAACTATGAGGATGCCCTTAGCTTTTGAACCACTTCTACTTGTGTTGAAATTTACCCTTTAATTTTGGGGTTTGACAGGCTCTGCCCTTCTGTTAT----------------------GCTTGAGTCTGGCTTTTCCTACTCTGACTCACTTTGAT-TCTTGACCTCTGAATCTTATTCCTATTTTACAAT-AAACACACA-TCGCACATACGCCAATTAGTAGAGTGGAAGAGGGAAAAATTGCCAAGGAACTATG--------TTTAATT----------------TTGTTCCTTTCGCAAACCAGACACCATA--ACAGAAA--AATTTTAGGAACATGTGCAT s panTro4.chr5 117722044 433 - 182651097 atGACATAGTTTAGAGTTAAATACTGACTGCTCTTGGGAACTTTGAGGTATTCTGAGGGATATAAATA--ACATGAAGAGAATAGCACATTGGCTTGCAGCAGATTAGAGTCTGTTACCTGCGTGAATACTTGCTTTTCATGAACTATGAGGATCCCGTTAGCTTTTGAACCACTTCTACTTGTGTTTAAATTTACCCTTTAATTTTGGGGTTTGACAGACTCTGCCCTTCTGTTCC----------------------GCTTGAGTCTGGCTTTTCCTACTCTGACTCACTTTGAT-TCTTGACCTCTGAATCTTATTCCTATTTTACAAT-AAACACACA-TGGCACATATGCCAATGAGTAGAGTGGAAGAGGGAAAAATTGCCAAGGAACTGTG--------TTTAATT----------------TTGATCCTTTCGCAAACCAGATACCATA--ACAGAAA--AATTTTAGGAATATGTGCAT i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48796258 433 + 183952662 atGATATAGTTTAGAGTTAAACACTGACTGCTCTTGGGAACTCTGAGGTATTCTGAGGGATATAAATA--ACATGAAGAGAATAACACATTGGCTTGCAGCAGATTAGAGTCTGCTACCTGCTTGAATACTTGCTTTCCATGAACTATGAGGATCCCATTAGCTTTTGAACCACTTCTACTTGTGTTTAAATTTACCCTTTAATTTTGGGGTTTGACAGGCTCTGCCCTTCTGTTCC----------------------GCTTGAGCCTGGCTTTTCCTACTCTGACTCTCTTTGAT-TCTTGACCTCTGAATCTTATTCCTATTTTACAAT-AAACACACA-TGGCACATATGCCAATAAGTAGAGTGGAAGAGGGAAAAATTGTCAAGGAACTATG--------TTTAATT----------------TTGTTCCTTTCGCAAACCAGACACCATA--ACACAAA--AATTTTAGGAATATGTGCAT i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54714779 431 + 109391073 atgatataGTTTAGAGTGAAATACTGACTGCTCTTGGGAACTTTGAGGTATTCTGAGGGATATAAATA--ACACGAAGAGAACAGCACATTGGCTTGCGGCAGGTTAGAGTCTGCTACCTGCGTGAATACTTGCTTTTCATGAACTATGAGGATCCCCTTAGCTTTTGAACCACTTCTGCTTGTGTTTAAATTTATCCTTTAATTTTGAGGTTTGACAGGCTCTGCCCTTCTGTTAT----------------------GCTTGAGTCTGGCTTTTCCTACTCTGACTCACTTTGAT-TCTTGACCTCTGAACCTTATTCCTATTTTACAAT-AAACACACA-TGGCACATATGCCAATGAGTAGAGTGGAAGAGGGAAAAATTGCCAAGGAACTATG--------TTTAATT----------------TTGTTCCTTTCGCAAACCAGACACCGTA--ACAG--A--AATTTTAGGAATATGTGCAT i nomLeu3.chr12 C 0 C 0 s rheMac3.chr6 48569945 433 + 180491593 atgatataGTTTAGAGTTAAATACTGGCTGCTCTTGGGAACTTTGAGGTGTTCTGAAGGATATAAATA--ACACGAAGAGAATAGCACATTGGCTTGCAGCAGATTAGAGTCTGCTACCTGTGTGAATACTTGCTTTTCATGAACTATGAGGATCCCCTTAGCTTTTGAACCATTTCTACTTGTGTTTAAATTTACCCTTTAATTTTGGGATTTGACAGCCTCTGCCCTTCTGTTCC----------------------ACTTAAGTGTGGCTTTTCCTACTCTGACTCACTTTGAT-TCTTGACCTCTGAATCTTATTCCTATTTTACAAT-AAACATACA-TAGCACATATGCCAATGAGTAGAGTGAAAGAGGGAAAAAATGCCAAGGAACTGTG--------TTTAATT----------------TTGTTCCTTTCACAAATCAGACACCATA--ACAGAAA--AATTATAGGAATATGTCCAT i rheMac3.chr6 C 0 C 0 s macFas5.chr6 49892802 433 + 181584905 atgatataGTTTAGAGTTAAATACTGGCTGCTCTTGGGAACTTTGAGGTGTTCTGAAGGATATAAATA--ACACGAAGAGAATAGCACATTGGCTTGCAGCAGATTAGAGTCTGCTACCTGTGTGAATACTTGCTTTTCATGAACTATGAGGATCCCCTTAGCTTTTGAACCATTTCTACTTGTGTTTAAATTTACCCTTTAATTTTGGGATTTGACAGCCTCTGCCCTTCTGTTCC----------------------ACTTAAGTGTGGCTTTTCCTACTCTGACTCACTTTGAT-TCTTGACCTCTGAATCTTATTCCTATTTTACAAT-AAACATACA-TAGCACATATGCCAATGAGTAGAGTGAAAGAGGGAAAAAATGCCAAGGAACTGTG--------TTTAATT----------------TTGTTCCTTTCACAAATCAGACACCATA--ACAGAAA--AATTATAGGAATATGTCCAT i macFas5.chr6 C 0 C 0 s papAnu2.chr6 46564394 433 + 174439528 atgatatagttTAGAGTTAAATACTGGCTGCTCTTGGGAACTTTGAGGTGTTCTGAGGGATATAAATA--ACACAAAGAGAATAGCACATTGGCTTGCAGCAGATTAGAGTCTGCTACCTGTGTGAATACTTGCTTTTCATGAACTATGAGGATCCCCTTAGCTTTTGAACCATTTCTACTTGTGTTTAAATTTACCCTTTAATTTTGGGATTTGACAACCTCTGCCCTTCTGTTCC----------------------ACTTAAGTGTGGCTTTTCCTACTCTGACTCACTTTGAT-TCTTGACCTCTGAatcttattcctattttacaat-aaacataca-tagcACATATGCCAATGAGTAGagtgaaagagggaaaaaatgccAAGGaactatg--------tttaatt----------------ttgttcctTTCACAAATCAGACACCATA--ACAGAAA--AATTATAGGAATATGTCCAT i papAnu2.chr6 C 0 C 0 s chlSab2.chr4 46909230 433 + 91010382 ATGATATAGTTTAGAGTTAAATACTAGCTGCTCTTGGGAACTTTGAGGTGTTCTGAGGGATATAAATA--ACACGAAGAGAATAGCACATTGGCTTGCAGCAGATTAGAGTCTACTACCTGTGTGAATACTTGCTTTTCATGAACTATGAGGATCCCCTTAGCTTTTGAACCATTTCTACTTGTGTTTGAATTTATCCTTTAATTTTGGGATTTGACAGCCTCTGCCCTTCTGTTCC----------------------ACTTAAGTGTGGCTTTTCCTACTCTGACTCACTTTGAT-TCTTGACCTCTGAATCTTATTCCTATTTTACAAT-AAACATATA-TGGCACATATACCAATGAGTAGAGTGAAAGAGGGAAAAAATGCCAAGGAACTGTG--------TTTAATT----------------TTGTTCCTTTCACAAATCAGACACCATA--ACAGAAA--AATTATAGGAATATGTCCAT i chlSab2.chr4 C 0 C 0 s calJac3.chr2 47269665 457 - 204313951 ATGATATAGTTTAGAGTTAAATACTAACTGTTCTTGGGAACATTGAGGTATTCTGAGGGATGTAAATA--ATACAAAGAGAACAGCACATTGGCTTGCAGCAGATTAGAGTCAGCTACCTGAGTGAATACTTGCTTTTCATGAACTATGAGGATCCCTTGAGCTTTTGAACCACATCTACTTGTGTTTAAATTTACCCTTTAATTTTGGGCTTTGACAGGCTCTGCCCTTCTGTTTCACATTGCTGAATGAATCCCTGTACTTGAGTCTGGCTTTCCCTACTCTGACTCACTTTGAT-TCTTGACCTCTGAATCTTATTTCTATTTTACAGG-AAACATACA-TGGCACATATGCCAATGAGTAGAGTGGGAGATGGAAAAACTGCCAATGAAATGTG--------GTTAATT----------------TTGTTACTTTCACAAACCAGACACCATAACACAGAAA--AATTTTAGAAATATGTGCAT i calJac3.chr2 C 0 C 0 s canFam3.chr4 23973923 458 - 88276631 -------AGTTTATATTTAAAAAGTGACTGCTCCTGAGACCTATGAGATATT-TGGAGGATGTAAATAGCATATAAAGAGAACAACACAC-------CAGTAGAATTTACTCTGTTACCTCCAGGAATAGTATC------TGAATTGTAAGGATTCCTTTAGCTTTTGAATAACCTCCACTTGTGTTTGGATAAATCCTATAATCATGGAGCTTGGTAGGCTCTACCTATCTAGTTCACATTACTGAATGAACATCTGTATTTGGGTCTAGTTTTTCCTAATCTGACCCATTTTGATATCTTTAACCCTGACTCTTATTTTTATTTTACAATAAAACATACATTAACAGATATGACAACAAATAGAGTGG---------AGAATGCCAAAGAACTGGGTTTTTTTTTTTAAttgttgttgttgttgttgttgttgttTTCACAAACCAGACACTGTAACACAGAAAACAAATTTAAGAATGTGTGTAT i canFam3.chr4 C 0 I 204 a score=240203.000000 s hg38.chr1_KI270765v1_alt 100871 71 + 185285 GTTCAGTAGCCTTCAATGCAATTATACTGGTTATTAAAAAGTGTTGGATAATCAATATTTTTTAAAGATTC s panTro4.chr5 117722477 71 - 182651097 GTTCAGTAGCCTTCAATGCAATTACACTCATTATTACAAAGTGTTGGATAATCAATATTTTTTAAAGATTC i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48796691 71 + 183952662 GTTCAGTAGCCTTCGATGCAATTACACTGGTTATTACAAAGTGTTAGATAGTCAATATTTTTTAAAGATTC i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54715210 71 + 109391073 GTTCAGTAGCCTTCAATGCAATTACACTGGTTATTACAAAGTGTTGGATAATCAATATTTTTTAAAGACTC i nomLeu3.chr12 C 0 C 0 s rheMac3.chr6 48570378 71 + 180491593 GTTCAGTAGCCTTCAATGAAATTACACTGGTTATTACAAAGTGTTGGATAATCAATATTTTTTAAAGATTC i rheMac3.chr6 C 0 C 0 s macFas5.chr6 49893235 71 + 181584905 GTTCAGTAGCCTTCAATGAAATTACACTGGTTATTACAAAGTGTTGGATAATCAATATTTTTTAAAGATTC i macFas5.chr6 C 0 C 0 s papAnu2.chr6 46564827 71 + 174439528 GTTCAGTAGCCTTCAATGAAATTACACTGGTTATTACAAAGTGTTGgataatcaatattttttaaagattc i papAnu2.chr6 C 0 C 0 s chlSab2.chr4 46909663 71 + 91010382 GTTCAGTAGCCTTCAATGAAATTACACTGGTTATTACAAAGTGTTGGATAATCAATATTTTTTAAAGATTC i chlSab2.chr4 C 0 C 0 s calJac3.chr2 47270122 71 - 204313951 ATTCAGTGGCCTTCAGTGCAGTTACACTGGTTATTACAAAATGATGGAGAATCAATATTTTTTAAATATTC i calJac3.chr2 C 0 C 0 s canFam3.chr4 23974585 59 - 88276631 GTTCATTAGCCTTCAGTGCAATTACACAGTTTGT------------GGGAATCAATTTTTTTTGAAGGTTT i canFam3.chr4 I 204 I 460 a score=546430.000000 s hg38.chr1_KI270765v1_alt 100942 183 + 185285 ACTAGT------CCCTTCTGATAATTTTAGAACTTTG----GGAAGTAATAATACAAATGTATTTTTAGCTGTGTCCTTTAATCTTTTACTGTTTCCTCTAtgtgtggtgt-ttggtt--tgtgtgtgtgtgATAATTATTATAAAGATCAGAGGCTAACAGAGGTGTTAATCACGAACTTT---TAAAtttttttt--------at-- s panTro4.chr5 117722548 181 - 182651097 ACTAGT------CCCTTCTCATAATTTTAGAACTTTG----GGAAGTAATAATACAAATGTATTTTTAGCTGTGTCCTTTAATCTTTTACTGTTTCCTCTATGTGTGGTGT-TTGGTT--TGTGTGTGTGTGATAATTATTATAAAGATCAGAGGCTAACAGAGGTGTTTATCACAAACTTT---TAAAAttttt----------at-- i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48796762 181 + 183952662 ACTAGT------CCCTTCTCATAATTTTAGAACTTTG----GGAAGTAATAATACAAATGTATTTTTAGCTGTGTCCTTTAATCTTTTACTGTTTCCTCTATGTGTGGTGT-TTGGTT--TGTGTGTGTGTGATAATTATTATAAAGATCAGAGGCTAACAGAGGTGTTTATCACAAACTTT---TAAAAttttt----------at-- i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54715281 183 + 109391073 ACTAGT------CCCTTCTCATAATTTTAGAACTTTG----GGAAGTAATAATACTAATGTATTTTTAGCTGTGTCCTCTAATCTTTTACTGTTTCCTCTAtgtgtggtgt-ttggtttgtgtgtgtgtgtgATGATTATTATAAAGATCAGAGGCTAACAGAGGTGTTTATCACGAACTTT---TAAAtttttt----------at-- i nomLeu3.chr12 C 0 C 0 s rheMac3.chr6 48570449 175 + 180491593 AATAGT------CCCTTCTCATAATTTTAGAACTTTG----GGAAGTAATAATACGAATGTAGTTTTAGCTGTGTCCTTTAATCTTTTACTGTTTCCTCTATGTGTGGTGT-TTGGTT--TGTGTGTGTGTGATAATTATTAT-AAGATCAGAGGCTAACAAAGGTGTTTATCATGACCTTT---AAAAt---------------tt-- i rheMac3.chr6 C 0 C 0 s macFas5.chr6 49893306 178 + 181584905 AATAGT------CCCTTCTCATAATTTTAGAACTTTG----GGAAGTAATAATACGAATGTAGTTTTAGCTGTGTCCTTTAATCTTTTACTGTTTCCTCTAtgtgtggtgt-ttggtt--tgtgtgtgtgtgATAATTATTAT-AAGATCAGAGGCTAACAAAGGTGTTTATCATGACCTTTAAAAAAAA---------------tt-- i macFas5.chr6 C 0 C 0 s papAnu2.chr6 46564898 178 + 174439528 aataGT------CCCTTCTCATAATTTTAGAACTTTG----GGAAGTAATAATACAAATGTAGTTTTAGCTGTGTCCTTTAATCTTTTACTGTTTCCTCtatgtgtggtgt-ttggtt--tgtgtgtgtgtgataattATTAT-AAGATCAGAGGCTAACAAAGGTGTTTATcatgacctttaaaaaaaa---------------at-- i papAnu2.chr6 C 0 C 0 s chlSab2.chr4 46909734 193 + 91010382 AATAGT------CCCTTCTCATAATTTTAGAACTTTG----GGAAGTAATAATACGAATGTATTTTTAGCTGTGTCCTTTAATCTTTTACTGTTTCCTCTAtgtgtggtgt-ttggtt--tgtgtgtgtgtgATAATTGTTAT-AAGATCAGAGGCTAACAAAGGTGTTTACCATGACCTTTAAAAAAAAttttttttttttttttt-- i chlSab2.chr4 C 0 C 0 s calJac3.chr2 47270193 172 - 204313951 ACTAGT------TCCTTCTCATAATTTTAGAACTTTG----AAAAGTAATAATAGAAATCTATTTTCAACAGTGTCCTTTAATCTCTTACTGTTTCCTCTATATGTGGTGT-TTGGTT--TGTGTGTGTGTGATCATTATTAT-AAGATCAGATGCGAACAGAGGTGTTTAT-ATGACCTTT---TAA-----------------Ct-- i calJac3.chr2 C 0 C 0 s canFam3.chr4 23975104 189 - 88276631 ACTAGTTCAAGGTCACTCACATAATTTTACCATTTTGACTTGGAAATAAGAGTGAAAATGTATGTCTTACAGTGTTCTATAATCTCCTACTATTTCCTCTTCATGCGGTATCCTGGTT------TGTGTGTGGTTATTGTTAT-AAGATCAGATGTGAACAGAGGTGTTTGCTATGACCTTT---TAGCTTTTTC----------TTGT i canFam3.chr4 I 460 I 1087 a score=908976.000000 s hg38.chr1_KI270765v1_alt 101125 335 + 185285 ttttatttttttagtttttttaagagacagagtctcgcagtgttgccaaggctgg-atgcagtcacgccaactcagctcactgcaaccttcgccttcagggttcaagcgattctgctgcctcagcctcccaagtagctgggactgcagaagggcaccacgatgccccactaatttttgtatttttagtagagatgtggtttcaccatattggccaggctggtcttgaactcctgatctcatgatccgcccacctcagcttccctaagtgctgggattacaggcgtgagccaccgcgtctggcTGCATGACCTTTTAACTTGTCTCATACACTCAAT s panTro4.chr5 117722729 335 - 182651097 ttttattttttaattctttttaagagacagagtctcactgcgtcactcaggctgg-atgcagtggtgccaacttagctcactgcaacctccgccttcaaggttcaagcgattctgctgcctcagcctcccaagtagctgggactactggagggtgccaccatgccccactaatttttgtatttttagtagagatggggtttcatcatgttggccaggctggtcttgaactcctgacctcatgatccgcccgcctcagcttccctaagttctgggattacaagcgtgagccaccgcgctcggcTGCATGACCTTTTAACTTGTCTCATACACTCAAT i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48796943 335 + 183952662 ttttattttttaattttttttaagagacagagtctcactgtgtcacccaggctgg-atgcagtggtgccaacttagctcactgcaacctccgccttcaaggttcaagcgattctgctgcctcagcctcccaagtagctgggactacaggagggtgccaccatgccccactaatttttgtatttttagtagagatggggtttcaccacattggccaggctggtcttgaacttctgacctcatgatccacccacctcagcttccctaagtgctgggattacaagcgtgagccactgcgcccggctGCATGACCTTTTAACTTGTCTCATACACTCAGT i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54715464 334 + 109391073 ttttatttttt-atttcttttaagagacagagtctcacggtgtcacccaggctgg-atgcagtggcaccagctcagctcactgcaacctccgtcttcagggttcaagcaattctgctgcctcagcctcccaagtagccgggactacaggagggcaccaccatgccccactaatttttgtatttttagtagagatggggtttcaccatattgaccaggctggtcttgaattcctgacctcatgatccgcccgcctcagcttccctaagtgctaggattacaggcgtgagccaccacgcccggcTGCATGACCTTTTAACTTGTCTCATACACTCAAC i nomLeu3.chr12 C 0 C 0 s rheMac3.chr6 48570624 331 + 180491593 ttttttttttt----tttggtaagagccagagtcttgctgtgttgcccaggcagg-atgcaatggcaccatctcagcttactgaaacctctgccttcagggttcaagcaattctgctgcctcaggctcccaagtagctgggactacaggtgggcgccaccatgccccactaagttttgtatttttagtagaaacggggtttcaccatattggccaggctggtcttgaactcctgacctcatgatctgcccacctcagtttccctaagtgctgggattacagacatgagccaccacgcctggccACATGACATTATAACTTGTCTCATATACTCAAT i rheMac3.chr6 C 0 I 2758 s macFas5.chr6 49893484 331 + 181584905 ttttttttttt----tttggtaagagacagagtcttgctgtgttgcccaggcagg-atgcaatggcaccatctcagcttactgaaacctccgccttcagggttcaagcaattctgctgcctcaggctcccaagtagctgggactacaggtgggcgccaccatgccccactaatttttgtatttttagtagaaacggggtttcaccatattggccaggctggtcttgaactcctgacctcatgatctgcccacctcagtttccctaagtgctgggattacagacatgagccaccacgcctggccACATGACATTATAACTTGTCTCATATACTCAAT i macFas5.chr6 C 0 C 0 s papAnu2.chr6 46565076 329 + 174439528 ttttttttttt----tttggtaagagac--agtcttgctttgttgcccaggcagg-atgcagtggcaccatctcagcttactgcaacctccgccttcagggttcaagcaattctgctgcctcaggctcccaagtagctgggactacaggtgggcgccaccatgccccactaatttttgtatttttagtagaaacgggatttcaccatattggccaggctggtcttgaactcctgacctcatgatctgcccacctcagtttccctaagtgctgggattacagacatgagccaccacgcctggccacatgACATTATAACTTGTCTCATACACTCAAT i papAnu2.chr6 C 0 C 0 s chlSab2.chr4 46909927 331 + 91010382 ttttttttttt----tttGGTAAgagacagagtcttgttgtgtcgcccaggcagg-atgcagtggcaccatctcagcttactgcaacctccgccttcagggttcaagcaattctgctgcctcaggctcccaagtagctgggactacaggtgggcgccaccatgccccactaatttttgtatttttagtagaaacgaggtttcaccatattggccaggctggtcttgaactcctgacctcatgatctgcccacctcagtttccctaagtgctgggatcacagacatgagccaccacgcctggccACATGACATTATAACTTGTCTCATATACTCAAT i chlSab2.chr4 C 0 I 2779 s calJac3.chr2 47270365 328 - 204313951 ttttttgtttt----tttg----gagactgagtcttgctgtgtcacccaggctggcatgcagtggcacaatctcagctcactgtaacctacatctctcacattcaagcgattctcttgcctcagcctcccaagttgctgggactacaggcacgtgccaccatgaacagctaatttttgtatttttagtagagacaggatttcaccatattggccatgctgggatcgaactcctgactttgtgatccacctgcgtcagcctccctaagtgctgggataacaggcatgaaccactgcaccaggccACATGATCTTTTAACTTATCTCATATACTCAAT i calJac3.chr2 C 0 I 1292 e canFam3.chr4 23975293 1087 - 88276631 I a score=2610.000000 s hg38.chr1_KI270765v1_alt 101460 4 + 185285 ATTC s panTro4.chr5 117723064 4 - 182651097 ATAC i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48797278 4 + 183952662 ATAC i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54715798 4 + 109391073 ATAC i nomLeu3.chr12 C 0 C 0 s macFas5.chr6 49893815 3 + 181584905 -TTC i macFas5.chr6 C 0 I 2753 s papAnu2.chr6 46565405 3 + 174439528 -TTC i papAnu2.chr6 C 0 I 2764 e calJac3.chr2 47270693 1292 - 204313951 I e chlSab2.chr4 46910258 2779 + 91010382 I e rheMac3.chr6 48570955 2758 + 180491593 I e canFam3.chr4 23975293 1087 - 88276631 I a score=766386.000000 s hg38.chr1_KI270765v1_alt 101464 252 + 185285 TCAAGATATACCTTCCAAAGTGCAAAATTATGGCACTTTGCAGCCCTGACCACTAACTGAGAACTTTGATGCTTTGGATTTTGGAGACCTCATTTTATCACCTGGTCCTTTTACTTCATGACTTGTCATGCTGCCACCTTTTGATGGGATTGAGATGAAGATAATAATTCCCAACTGGTCAGGAATATTGTGCCCCTTTGTTTTTATATCCAGATGCAATAGAGCCTCTGACACACCACTACTATT------------------------GTTCTT s panTro4.chr5 117723068 252 - 182651097 TCAAGGTATACCTTCCAAAGTGAAAAATTATGGCACGTTGCAGTCCTGACCGCTAATTGAGAGCTTTGATGCGTTGGATTTTGGAGACCTCATTTTATCACCTGGTCCTTTTACTTTATGACTTGTCATGCTGCCATCTTTTGATGGGATTGAGATCAAGATAATAATTCCCAACTGGTCAGGAATATTGTGCCCCTTTGTTTTTATATCCAGATGCAATAGAGCCTCTGACACACCACTACTGTg------------------------gttctt i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48797282 252 + 183952662 TCAAGATATACCTTCCAAAGTGAAAAATTATGGCACGTTGCAGCCCTGACCACTAACTGAGAACTTTGATGCTTTGGATTTTGGAGACCTCATTTTATCACCTGGTCCTTTTACTTTATGACTTGCCATGCTGCCACCTTTTCATGGGATTGAGGTCAAGATAATAATTCCCAACTGGTCAGGAATATTGTGCCCCTTTGTTTTTATATCCAGATGCAATAGAGCCCCTGACACACCACTACTATg------------------------gttctt i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54715802 252 + 109391073 TCAAGATATACCTTCCAAAGTGAAAAATTATGGCACTTTGCAGCCCTGACCACTAATTGAGAACTTTGATGCTTTGGATTTTGGAGACCTCATTTTATCACCTGGTCCTTTTACTTTATGACTTGTCATCCTGCCACCTTTTGATGGGATTGAGATCAAGATAATAATTCCCAACTGGTCAGGAATATTGTGCCCCTTTGTTTTTATATCCAGATGCAATAGAGCCTCTGACGCACCACTACTATT------------------------GTTCtt i nomLeu3.chr12 C 0 C 0 s rheMac3.chr6 48573713 250 + 180491593 TCAAGATATGCCTTCCAAAGTGAAAAATTATGGCACTTTGCAGCCCTGACCACTAATCGAGAACTTTGATGCTTTGGATTTTGGAGACCTCATTTTATCACCTAGTCCTTTTACTTTATGACTTGTCATGCTGCCACCTTTTGATGGGATTGAGATCAAGATAATAATTTCCAACTGATCAGGAATATTGTGCCCCTTTGTTTTTATATCCAGATGCAATAGAAC--CTGACACACCACTACTATg------------------------gttctt i rheMac3.chr6 I 2758 C 0 s macFas5.chr6 49896571 250 + 181584905 TCAAGATATGCCTTCCAAAGTGAAAAATTATGGCACTTTGCAGCCCTGACCACTAATCGAGAACTTTGATGCTTTGGATTTTGGAGACCTCATTTTATCTCCTGGTCCTTTTACTTTATGACTTGTCATGCTGCCACCTTTTGATGGGATTGAGATCAAGATAATAATTTCCAACTGGTCAGGAATATTGTGCCCCTTTGTTTTTATATCCAGATGCAATAGAAC--CTGACACACCACTACTATG------------------------GTTCTT i macFas5.chr6 I 2753 C 0 s papAnu2.chr6 46568172 250 + 174439528 TCAAGATATGCCTTCCAAAGTGAAAAATTATGGCACTTTGCAGCCCTGACCACTAATCGAGAACTTTGATGCTTTGGATTTTGGAGACCTCATTTTATCACCTGGTCCTTTTACTTTATGACTTGTCATGCTGCCACCTTTTGATGGGATTGAGATCAAGATAATAATTTCCAACTGGTCAGGAATATTGTGCCCCTTTGTTTTTATATCCAGATGCAATAGAAC--CTGACACACCACTACTATG------------------------GTTCTT i papAnu2.chr6 I 2764 C 0 s chlSab2.chr4 46913037 250 + 91010382 TCAACATATGCCTTCCAAAGTGAAAAATTATGGCACTTTGAAGCCCTGACCACTAATCAAGAACTTTGATGCTTTGGATTTTGGAGACCTCATTTTATCACCTGGTCCTTTTGCTTTATGACTTGTCATGCTGCCACCTTTTGATGGGATTGAGATCAAGATGATAATTTCCAACTGGTCAGGAATATTGTGCCCCTTTGTTTTTATATCCAGATGCAATAGGAC--CTGACACACCACTACTATG------------------------GTTCTT i chlSab2.chr4 I 2779 C 0 s calJac3.chr2 47271985 275 - 204313951 TCAAGATACACCCTCCAAAGTGAAAAATTATGGCACTTTGCAGCCCTGACCACTAATTGAGAACTTTGATGCTTTGGGTTTTGGAAACCTCATTTTATCACCTGGTCCTTTTACTTTATTACTTTTCATGATGCCACCTTTTGATGAGATTAAGATCAAGATAATAATT-CCAACTGGTCAGGAATATTGTGCCCCTTTGTTCTTATATCCAGATGCAATACAGCCTCTGACACACCCCTACTGTGTTCTTAGGACACACCCCTACTATAgttctt i calJac3.chr2 I 1292 C 0 e canFam3.chr4 23975293 1087 - 88276631 I a score=1987241.000000 s hg38.chr1_KI270765v1_alt 101716 628 + 185285 AGGATTTGGAACAAAATGCA----TCTTTCTTTGACAAAATAAATGTTTTCTTT-------AAAGAACTCTTGA-TTGATCCT-GGACCATTGTAGAAACTGAAGTCCTATCAATG--------------------------CAAAAAAA-TATGACAACATGAGCTGCTTATCATGAAATAAGTGTTTTCCAATTAACTATCCTGCTTCATCAGCAGGTAGGAATAATAGA------------------------------------------------------------------------------ATCTATACCTATGTCTTCATGGGAAGTTCTCTATGGCCAGTTGATTAGTGA-GGGAAAAATTGAGCCTGATTTACAGAAGTCACTGTACAACATCACAGCAGCAGCCAAAAGTAGATTGCTTAGGCATTATAACCTACGTGAATGCAATTTTAAAaga-aattcagcctatgtaattggttgtccacgatgtctagaaggagagatattattgatgtatatgtggcagctaataatttgtctagataatta-gggacttggggccaggcctgatggctcacacctgtaatcccagaacttttggaggacaggacaggtggattgtctgaggtcaggagttcgaaaccagcctggctgacatggtgaaactccgtctctactaaaaatacaaaaattagccagatgtggtggtgtgtgcctgcaatcctagctacttggg s panTro4.chr5 117723320 629 - 182651097 aggatttggaacaaaatgct----tctttctttgacaaaataaatgttttcttt-------aaagaattcttga-ttgatcct-ggaccattgtagaaactgaagtcttaccaatg--------------------------caaaaaaaatatgacaacatgagctgcttatcatgaaataagtgttttcCAGTTAACTATCCTGCTTCATCAGCAGGTAGGAATAATAGA------------------------------------------------------------------------------ATctatacctatgtcttcatgggaagttctctatggccagttgattagtga-gggaaaaattgagcctgatttacagaagtcgctgtacaacatcacagcaacagccaaaagtagattgcttaggcattataaccTACTTGAATGCAATCTTAAAAGA-AATTCAGCCTATGTAATCAGTTGTCCACgatgtctagaaggagagatattattgatttatatgtggcagctaaaaatttgtctaggtaatta-gggacttggggccaggcctggtggctcacacttgtaatcccagaactttgggaggacaagacaggcggattgtctgaggtcaggagttcgaaaccagcctggctaacatggtgaaactccatctttactaaaaatacaaaaattagccaggtgtggtggtatgtgcctgtagtcccagctactcgag i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48797534 628 + 183952662 aggatttggaacaaaatgct----tctttctttgacaaagtaaatgttttcttt-------aaagaactcttga-ttgatcct-ggaccattgtagaaactgaagtcttaccaata--------------------------caaaaaaa-tatgacaacatgagctgcttatcatgaaataagtgttttcCAGTTAACTATCCTGCTTCATCAGCAGGTAGGAATAGTAGA------------------------------------------------------------------------------ATctatacctatgtcttcatgggaagttctctatggccagttgattagtga-gggaaaaattgagcctgatttacagaagtcgctgtacaacatcacagcaacagccaaaagtagattgcttaggcattataaccTACTTGAATGCAATTTTAAAaga-aattcagcctatgtaattggtcgtccacgatgtctagaaggagagatattattgatttatatgtggcagctaataatttgtctagataatta-ggaacttggggccaggcctggtagctcacacctgtaatcccagaactttgggaggacaagacaggtggattgtctgaggtcaggagtttgaaaccagcctggctaacatggtgaaactccatctttactaaaaatacaaaaattagccaggtgtggcggtgtgtgcctgtagtcccagctactcggg i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54716054 628 + 109391073 aggatttggaacaaaatgct----tctttctttgacaaaataaatgttttcttt-------aaagaactcttga-ttgatcct-ggaccattgtagaaactgaagccctaccaatg--------------------------caaaaaaa-tatgacaatatgagctgcttatcatgaaataagtgttttcCAATTAACTATCCTGCTTCATCAGCAGGTAGGAATAAAAGA------------------------------------------------------------------------------ATCTATATCTATGTCTTCATGGGAAGTTCTCTATGGCCAGTTGATTAGTGA-GGGAAAAATTGAGCCTGATTTACAGAAGTCACTGTACAACATCACAGCAACAGCCAAAAGTAGATTACTTAGGCATTATAACCTACTTGAATGCAATTTTAAAaga-aattcagcctatgtaattggttgttcatgatgtctagaaggagagatattattgatttatatgtggcagctaataatttgtctagataatta-gggacttggggccaggcctggtggctcacacctgtaatcccagaactttgggaggacaagacaggtggattgtctgaggtcaggagttcaaaaccagcctggctaacatggtgaaactccatctttactaaaaatacaaaaattagccaggtgcagtggtgtgtgcctgtaatcctagctactcggg i nomLeu3.chr12 C 0 C 0 s rheMac3.chr6 48573963 633 + 180491593 aggatttggaacaaaatgct----tctttcttttacaaaataaatgctttcttt-------aaacaactcttga-ttgatcct-ggaccattgtagaaactgaaatcctaccaatg--------------------gaaaaaaaaaaaaa-aatgaccac-tgagctgcttatcatgaaataagtgttttcCAAATAACTATCCTGCTTCATCAGCAGCAAGGAATAATAGA------------------------------------------------------------------------------ATctataccaatgtcttcatgggaagttctctatggccagttgattagtga-gggaaaaattcagcctgatttacagaagttactgtacaacatcacggtaacagccaaaagtagattgcttatgcattataaccTACTTGAACGCAATTTTAAAaga-aattcagcctatgtaattggttgtccatgatgtctagaagaaaagatgttattgatttatatgtggcagctaataagttgtctagataatta-gggactcggggctaggcctggtggctcacacctataatcccagaactttgggaggacaagacaggtggatcgcctgaagtcaggagtttgaaaccagcctggctaacatggtgaaattccatctctaccaaaaatatgaaaattagccaggtgtggtggtgtgcgccagtagtcccagctagttcgg i rheMac3.chr6 C 0 C 0 s macFas5.chr6 49896821 633 + 181584905 AGGATTTGGAACAAAATGCT----TCTTTCTTTTACAAAATAAATGTTTTCTTT-------AAACAACTCTTGA-TTGATCCT-GGACCATTGTAGAAACTGAAGTCCTACCAATG--------------------GAAAAAAAAAAAAA-AATGACCAC-TGAGCTGCTTATCATGAAATAAGTGTTTTCCAAATAACTATCCTGCTTCATCAGCAGGAAGGAATAATAGa------------------------------------------------------------------------------atctataccaatgtcttcatgggaagttctctatggccagttgattagtga-gggaaaaattcagcctgatttacagaagttactgtacaacatcacggtaacagccaaaagtagattgcttatgcattataacctacttgaatgcaattttaaaaga-aattcagcctatgtaattggttgtccatgatgtctagaagaagagatgttattgatttatatgtggcagctaataagttgtctagataatta-gggactcggggctaggcctggtggctcacacctataatcccagaactttgggaggacaagacaggtggatcgcctgaagtcaggagtttgaaaccagcctggctaacatggtgaaattccatctctaccaaaaatatgaaaattagccaggtgtggtggtgtgcgccagtagtcccagctacttggg i macFas5.chr6 C 0 C 0 s papAnu2.chr6 46568422 633 + 174439528 AGGATTTGGAAcaaaatgct----tctttcttttacaaaataaatgttttcttt-------aaacaacTCTTGA-TTGATCCT-GGACCATTGTAGAAACTGAAGTCCTaccaatg--------------------ggggaaaaaaaaaa-aatgaccac-tgAGCTGCTTATCATGAAATAAGTGTTTTCCAATTAACTATCCTGCTTCATCAGCAGGAAGGAATAATAGA------------------------------------------------------------------------------ATCTATACCAATGTCTTCATGGGAAGTTCTCTATGGCCAGTTGATTAGTGA-GGGAAAAATTCAGCCTGATTTACAGAAGTTACTGTACAACATCATGGTAACAGCCAAAAGTAGATTGCTTATGCATTATAACCTACGTgaatgcaattttaaaaga-aattcagccTATGTAATTGGTTGTCCATGATGTCTAGAAGAAGAGATGTTATTGATTCATATGTGGCAGCTAATAAGTTGTCTAGATAATTA-GGGACTCGGggctaggcctggtggctcacacctgtaatcccagaactttgggaggacaagacaggtggatcgcctgaagtcaggagttcgaaaccagcctggctaacatggtgaaattccatctctaccaaaaatatgaaaattagccaggtgtggtggtgtgcgccagtagtcccagctacttggg i papAnu2.chr6 C 0 C 0 s chlSab2.chr4 46913287 651 + 91010382 AGGATTTGGAACAAAATGCT----TCTTTCTTTTACAAAATAAATGTTTTCTTT-------AAACAACTCTTGA-TTGATCCT-GGACCATTGTAGAAACTGAAGTCCTACCAATGCaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa-aaTGACGAC-TGAGCTGCTTATCATGAAATAAGTGTTTTCCAATTAACAATCCTGCTTCACCAGCAGGAAGGAATAATAGA------------------------------------------------------------------------------ATCTACACCAATGTCTTCATGGGAAGTTCTCTATGGCCAGTTGATTAGTGA-GGGAAAAATTCAGCCTGATTTACAGAAGTTACTGTACAACATCACAGTAACAACCAAAAGTAGATTGCTTATGCATTATAACCTACTTGAATGCAATTTTAAAAGA-AATTCAGCCTATGTAATTGGTTGTCCATGATGTCTAGAAGAA---ATGTTATTGATTTATATGTGGCAGCTAATAAGTTGTCTAGATAATTAGGGGACTCGGggctaggcctggtggctcacacctgtaatcccagaactttgggaggacaagacaggtggatcgcctgaagtcaggagttcaaaaccagcctggctaacatggtgaaattccatctctaccaaaaatatgaaaattagccaggtgtggtggtgtgcaccagtagtcccagctacttggg i chlSab2.chr4 C 0 C 0 s calJac3.chr2 47272260 625 - 204313951 aggatttggaacaaaatgct----tctttcttagacaaaatatatgttttcttt-------aaagaact-ttga-ttgatcct-gggccattgtagaaactaaagtcccaccaatg--------------------------gaacaaaa-tatgacaacatgagctgcttgtcatgaaataagtattttcCAATTAACTATC---CTTCATCAGCAGGTAGGAATAATAGA------------------------------------------------------------------------------ATCAATGcctatgtcttcatgggatgttctctatggccagttgattaatgagggggaaaattgagcctgatttacagaagtcactgtataacttcacagcaacagccataagtagattgcttaggcattataaccTACTTGAAAGCAATTGTAAAaga-aattcagtctatgtaactggtggttcatgatgtctagaaggagagatattattgatgtatatgtagcagttaataatttgtctagataatta-gggacttggggccaggcatggtggctcacacctgtaatcccagcactttgggaagccaagacagttggatcacttgaggtcaggactatgagactagcttggctaacacagtgaaaccctgtctctactaaaaatacaaaaattagctgggtgtggtggcatgcacctacagtcccagctataaggg i calJac3.chr2 C 0 C 0 s canFam3.chr4 23976380 581 - 88276631 AAAATTTATAGCAAAATGCTTTTCTTTTTTTTTGGCAAAATGAGAATTTTTGTTTTTTAAGAGACAACTCTTGATTTGATCCTGGGGCCATTGTGGAGATTGGAGTCCTGTCAGTG--------------------------GAACAAAA-CACAACAACATGAACTGTTTATCATGAAGTTAGTGCTACCCAATTAacaggtgtaccccatcagcaggcaagaataatatatagggactagagccacagcagatcctgaagacacagaaaccttcctgagcttactctctgcactgctgccccttcttgatctttatctgtatcttcatgggaaattccctgtggccagttgattaatga-gggaaaaattgagcctg-tttttagaagtcactgcacaatatatcagtgcaagctaaaagtagattgcttagacattatagcccACTTGAGTATAAACTTAAGAGATACTTCAAACCATATATTTGGCTGTTCACTATTCTCGCAAGATGAGATATTattgagttatgcatggtagctaataatttagttaaatgatta-gggacttgg-----------------------------------------aaggaacaagattggaggattg---gtaattatgagtt----------------------------------------------------------------------------------------------ttggg i canFam3.chr4 I 1087 C 0 a score=283379.000000 s hg38.chr1_KI270765v1_alt 102344 120 + 185285 aggctgaggcaggagaatctcttgaatccaggaggaagaagttgcagtgaaccaagattgcaccactgcactccagcctgggcaacaaagtgaaactctgtctcaaaaaaaaaaaaaaaa s panTro4.chr5 117723949 116 - 182651097 aggctgaggtgggagaatctcttgaatccaggaggcagaagttgcagtgagccaagattgcaccactgcactccagcctgggcaacaaagcgaaactccgtctcaaaaaaaaaaaa---- i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48798162 116 + 183952662 agactgaggtcggagaatctcttgaatccaggaggcagaagttgcagtgagccaggactgcaccactgcactccagcctgggcaacaaagcgaaactccgtctcaaaaaaaaaaaa---- i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54716682 116 + 109391073 aggctgaggcaggagaatctcttgaatccaggaggcagaagttgcagtgagccaagattgcaccactgcactccagcctgggcaacaaagtgaaactccgtctcaaaaaataaata---- i nomLeu3.chr12 C 0 C 0 s rheMac3.chr6 48574596 109 + 180491593 aggctgaagcaggagaatctcttgaatccaggaggcagaagttacagtgagccaaaattgcgccactgcactccagcctgggcaacagagcaaaactccctt-------aaaaaaa---- i rheMac3.chr6 C 0 C 0 s macFas5.chr6 49897454 109 + 181584905 aggctgaagcaggagaatctcttgaatccaggaggcagaagttacagtgagccaaaattgcgccactgcactccagcctgggcaacagagcaaaactccctt-------aaaaaaa---- i macFas5.chr6 C 0 C 0 s papAnu2.chr6 46569055 114 + 174439528 aggctgaagcaggagaatctcttgaatccaggaggcagaagttacagtgagccaaaattgcgccactgcactccagcctgggcaacagagcaaaactccctt--aaaaaaaaaaaa---- i papAnu2.chr6 C 0 C 0 s chlSab2.chr4 46913938 108 + 91010382 aggctgaagcaggagaatctcttgaatccgggaggcagaagttacagtgagccaaaattgtgccacggcactccagcctgggcaacagagcaaaactccctt--------aaaaaa---- i chlSab2.chr4 C 0 C 0 s calJac3.chr2 47272885 87 - 204313951 aggctgaggcaggagaatggcttgaatccaggaggccgaggttg-----------------------------cagcctgggcaacaaagtgaaacttcatctcaaaaaaaaaaaa---- i calJac3.chr2 C 0 C 0 e canFam3.chr4 23976961 0 - 88276631 C a score=3517330.000000 s hg38.chr1_KI270765v1_alt 102464 1147 + 185285 aaagaaaagaaaagataattagggactcggaaagacaaagactgaaggattggtggcaatgag-ttttggggaaaaaatatgtagatgaaccacagaaaatgagccagagtgtaagaatatttgtgcttaatacgaatgctcacgaaactatcatcaggaaggttatcaaatagatatgaaggtatgaaacaatctctttcaccaggcactacattgcttgcttagaaggctaataaac--agcaacattggtggtagcagtagagaatacacataggtttagcaacatgttggactttaccactctcgcttacaaaagcctatttagctgtcaagactattaggtgtccaacacacaagcaacaaagtccaaggctaagcacacaataacatatcctgggtgaataaaccagtcacc-ttttgtcagacttgttgattttattggagctcctctatgataaaggcaacaaggaattttgtaaatggaatctacctttaa--------ccttgaattacatttgctttacctg-acatcatttttctctgatcgccactctccacgggtacattgaatgccttatatatactgccataatatcctgttctacatc-cttctcttaaaagaacttgttgtataacaaatgagtagatattcattggactcacctggtccaccatttatcctatcactaaccaaaattattattattacagaatggtgaatattttattaaagactcaatcacagtgtcagctggagacaatggcttataaggttgtactcatgctagaggatgtggtggtgtat-cctctgaactagtaactaagtataagcttgtctggtgtctcctatataaaaaa-tacaaca----------------------------atctttgatatttgttatgaatgttgaagtgactccttttgtcattacatctaatgatccactccaaatacttgtctcttgtctctgagattctaggtttttgcagaattagtacccaaagggagagtcttagcagtattccattttacaatccatccttcgttagaggatgagagacttctatctagccttttaggttgcctgagacctttaaacaaacagtcaa-------aaaTTTAAAATTTAAAATGCGGCTACACTGTGGCATGGGGTAGTAAATCTTGA----CCTTAAAAC s panTro4.chr5 117724065 1134 - 182651097 -------------gataattagggacttggaaggacaaagattgaagcattggtgacaatgag-ttttggggaaaaa-tatgtagatgaactacagaaaatgagccagagtgtaagaatatttgtgcttaatatgaatactcaccaaactatcatcaggaaggttatcaaataaatatgaaggtatgaaacaacttctttcaccaggcactacattgcttgctcagaaggctaataaac--agcaacattggtggtagcagtagagaatacatataggtttagcaacatgttggactttaccactgtcccttaccaaagcctatttagctgtcaagactattaggtgtccaacacacaagcaacaaggaccaaggctaagcacaaaataacatatcctgggtgaataaaccagtcacc-ttttgtcagacttgttgattttaccggagctcctctatgataaaggcaacaaggaatgttgtaaatggaatctagctttat------atccttgaattacatttgcttgacctg-acatcatgtttctctgatcaccactctccgtgggtacattgaatgccttatacatactgccataatatcctgttctacatc-cttctattcaaagaacttgttgtataacaaatgagtagatattcactggactcacctggtccaccatttatcctatcactaaccaaaattattattattatagaatggcgaatattttattaaagactcaatcacagtgccagctggagacaatggcttataaggttgtactcatgccagaggatgtggtggtgtat-cctctgaactagtaactaagtataagcttgtctggtgtctcccatataaaaaa-tacaaca----------------------------atctttgatctttgttatgaatgttgaagtgactccttttgtcattacatctaatgatccactccaaatatttgtctcttgtctctgagattctaggtttttgcagaattagtacccaaggggagagcctcaacAATATTTCATTTTATGATCCATCCTTTGTTAGAGGATGAAAGACTTCTAACTGGCCTTTTAGGTTGCCTGAGACCTTTAGACAAACAGTCAA-------AAATTTAAAATTTAAAATGTGGC-ACACTGTTGCATGGGGTAGTAAATCTTGA----CCTTAAAAC i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48798278 1139 + 183952662 ---------aaaagataattagggacttggaaggacaaagattgaaggattggtgacaatgagtttttggggaaaaaatatgtagatgaaccacagaaaatgagccagagtgtaagaatatttgtgcttaatatgaatactcaccaaactatcatcaggaaggttatcaaatagatatgaaggtatgaaacaacctctttcaccaggcactacattgcttgctcagaaggctaataaac--agcaacattggtggtagcagtagagaatacacataggtttagcaacatgttggagtttaccactgtcccttacgaaagcctatttagctgtcaagactattaggtgtccaacacacaagcaacaaggaccaaggctaagcacacaataacatatcctgggtgaataaaccagtcacc-ttttgtcagactcgttgattttactggagctcctctatgataaaggcaacaaggaatgttgtaaatggaatctacctttat--------ccttgaattacatttgcttgacctg-acatcatgtttctctgatcaccactctccatgggtacattgaatgccttatacatgctgccataatatcctgttctacatc-cttctattcaaagaacttgttgtataacaaatgagtagatattcactggactcacctggtccaccatttatcctatcactaacgaaaattattattattatagaatggcaaatattttattaaagactcaatcacagtgctagctggagacaatggcttataaggttgtactcatgctagaggatgtggtggtgtatccctctgaactagtaactaagtataagcttgtctggtgtctcccatataaaaaa--acaaca----------------------------atctttgatctttgttatgaatgttgaagtgactccctttgtcattgcatctaatgatccactccaaatacttgtctcttgtctctgagattctaggtttttgcagaattagtacccaaggggatagtctcagcagtattccattttatgatccatccttcattaaaggatgagagacttctaactggccttttaggttgcctgagacctttagacaaatagtcaa-------aaaTTTAAAATTTAAAATGTGGCTACACTGTTGCATGGGGTAGTAAATCTTGA----CCTTAAAAC i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54716798 1140 + 109391073 --aataaataaaaaataattaaggacttggaaggacaaagaatgaaggattggtagcaatgag-ttttggggaaaaaatatgtggatgaaccacagaaaatgagccaccgtgtaagaatatttgtgcttaatatgaatgctcaccaaactatcatcaggaaggttatcaaatagatatgaaggtatgaagcaacctctttcaccaggcactacattgcttgctcagaaggctaataaac--agcaacatcgttggtagcagtagagaatacacataggtttagcaacatgttttactttaccactctcccttaccaaagcctatttagctgtcaaaactattaggtgtccaacacacaagcaacaaggaccaaggctaagcacacaataacatatcctgggagaataaaccagtcacc-ttttgtcagacttgttgtttttattggagctcctctatgataaaggcaacaaggaattttgtaaatggaatctacctttat--------ccttgaattacatttgctttacctg-aaatcatgtttctctgatcaccactctccatgagtacattgaatgccttatatatactgccataatatcctgttctacatc-cttctattaaaagaacttgttgtataacaaatgagtagatattcattggacttacctggtccaccgtgtatcctatcactaaccaaaattattattattatagaatggagaatattttattaaagactcaatcacagtgccagctggagacaatggcttataaggttgtactcatgctagaggatgtggtggtgtat-cctctgaattagtaactaagtataagcttgtctggtgtctcccatataaaaaa-tacaaca----------------------------atctttgatctttgttatgaatgttgaagtgactccttttgtcattacatctaatgatccactccaaatac-tgtctcttgtctctgagattctaggtttttgcagaattagtacccaagggaagaGTCTTAGCAGTATTCCATTTTACGATCCATCCTTCGTTAGAGGATGAGAGACTTCTATCTGACCTTTTAGGTTGCCTAGGACCTTTAGAC----AGTCGA-------AAATTTAAAATTTAAAATGCGGGTACACTGTTGCATGGGGTAGTAAATCTTGG----CCTTAAAAC i nomLeu3.chr12 C 0 C 0 s rheMac3.chr6 48574705 1137 + 180491593 ---------aaaagattattagggacttggaaggac--agattgtaggactggtgacaatgag-ttttgggg-aaaaatacgtagatgaaccacagaaaatgagccgaagtgtaagaatatttgtgcttaatatgaatgctcaccaaactatcatcaggaaggttatcaaatagatatgagggtatgaaacaacctctttaaccaggcactacattgcttgctcagaaggctaataaac--agcaacattggtgctagtagtagagaatacacataggtttagcaacatgttgaactttatcactgtcccttaccaaagcccatttagctgtcaagactattgggtgtccaacatacaagcaacaaggaccaaggctaagcacacaataacatatcctgggtgaataaa-cagtcacc-ttttgtcagactcattgattttactggtgctcccctatgataaaggcaacagggaattttgtaaatggaatctacatttat--------ccttgaattacatttgctttacctg-acatcatgtttctctgatcaccactctccattggtacattgagtgctttgtacatactgccataatatcctgttctacattgcttgtattcaaagagtttgttgtataacaaatgagtag-tatttcttggatttacccggtccaccatttatcctatcactgaccaaaattattattat---agaatggcgaatattttattaaagactcaatcacagtgccagctggaaacaatggcttaaaaggttgtactcatgctagaggatgtggtggtgtat-cttctgagctagtaactaagtataagcttgtctggtgtctcccatataaaata-tacaaca----------------------------atctttgatctttgttatgaatgttgaagtgacttcttttttcattacatctaatgatccactccaaatacttgtctcttgtctctgagattctgggtttttgcagaattaatacccaaggggagaTTCTTAGCAGTATTCCATTTTACGATCCATCCTTCATTAGAGGATGAGAGACTTCTATCTGGCCTTTAAGGATACCTGAGACCTTTAGACGAACAGTCaaaaattttaaatttaaaatttaaaatGCGGCTACACTGTTGCAT-GGGTAGTAAATTTTGA----CCTTAAAAC i rheMac3.chr6 C 0 C 0 s macFas5.chr6 49897563 1138 + 181584905 ---------aaaagattattagggacttggaaggac--agattgtaggactggtaacaatgag-tttcggggaaaaaatacgtagatgaaccacagaaaatgagccgaagtgtaagaatatttgtgcttaatatgaatgctcaccaaactatcatcaggaaggttatcaaatagatatgagggtatgaaacaacctctttaaccaggcactacattgcttgctcagaaggctaataaac--agcaacattggtgctagtagtagagaatacacataggtttagcaacatgttgaactttatcactgtcccttaccaaagcccatttagctgtcaagactattgggtgtccaacatacaagcaacaaggaccaaggctaagcacacaataacatatcctgggtgaataaa-cagtcacc-ttttgtcagactcattgattttactggtgctcccctatgataaaggcaacagggaattttgtaaatggaatctacatttat--------ccttgaattacatttgctttacctg-acatcatgtttctctgatcaccacgctccattggtacattgagtgctttgtacatactgccataatatcctgttctacattgcttgtattcaaagagtttgttgtataacagatgagtag-tatttcttggatttacccgttccaccatttatcctatcactgaccaaaattattattat---agaatggcgaatattttattaaagactcaatcacagtgccagctggaaacaatggcttaaaaggttgtactcatgctagaggatgtggtggtgtat-cttctgagctagtaactaagtataagcttgtctggtgtctcccatataaaata-tacaaca----------------------------atctttgatctttgttatgaatgttgaagtgacttcttttttcattacatctaatgatccactccaaatacttgtctcttgtctctgagattctgggtttttgcagaattaatacccaaggggagaTTCTTAGCAGTATTCCATTTTACGATCCATCCTTCATTAGAGGATGAGAGACTTCTATCTGGCCTTTAAGGATACCTGAGACCTTTAGACGAACAGTCAAAAATTTTAAATTTAAAATTTAAAATGCAGCTACACTGTTGCAT-GGGTAGTAAATTTTGA----CCTTAAAAC i macFas5.chr6 C 0 C 0 s papAnu2.chr6 46569169 1138 + 174439528 ---------aaaagattattaggGACGTGGAAGGAC--AGATTGTAGGACTGGTGACAAtgag-ttttggggaaaaaatacgTAGATGAACCACAGAAAATGAGCCAAAGTGTAAGAATATTTGTGCTTAATATGAATGCTCACCAAACTATCATCAGGAAGGTTATCAAATAGATATGAGGGTATGAAACAACCTCTTTAACCAGGCACTACATTGCTTGCTCAGAAGGCTAATAAAC--AGCAACATTGGTGCTAGTAGTAGAGAATACACATAGGTTTAGCAACATGTTGAACTTTATCACTGTCCCTTACCAAAGCCCATTTAGCTGTCAAGACTATTGGGTGTCCAACATACAAGCAACAAGGACCAAGGCTAAGCACACAATAACATATCCTGGGTGAATAAA-CAGTCACC-TTTTGTAAGACTCATTGATTTTACTGGTGCTCCCCTATGATAAAGGCAACAGGGAATTTTGTAAATGGAATCTACATTTAT--------CCTTGAATTACATTTGCTTTACCTG-ACATCATGTTTCTCTGATCACCACTCTCCATTGGTACATTGAGTGCTTTGTACATACTGCCATAATATCCTGTTCTACATTGCTTGTATTCAAAGAGTTTGTTGTATAACAAATGAGTAG-TATTTCTTGGATTTACCCGGTCCACCATGTATCCTATCACTgaccaaaattattattat---agaatggcgaatattttattaaagactCAATCACAGTGCCAGCTGGAAACAATGGCTTAAAAGGTTGTACTCATGCTAGAGGATGTGGTGGTGTAT-CTTCTGAGCTAGTAACTAAGTATAAGCTTGTCTGGTGTCtccaatataaaaaa-tacaaca----------------------------atctttgatctttgttatGAATGTTGAAGTGACTTCTTTTTTCATTACATCTAATGATCCACTCCAAATACTTGTCTCTTGTCTCTGAGATTCTGGGTTTTTGCAGAATTAATACCCAAGGGGAGATTCTTAgcagtattccattttatgatcCATCCTTCATTAGATGATGAGAGACTTCTATCTGGCCTTTAAGGATACATGAGACCTTTAGACGAAcagtcaaaaatttaaaatttaaaatttaaaatgcggCTACACTGTTGCAT-GGGTAGTAAATTTTGA----CCTTAAAAC i papAnu2.chr6 C 0 C 0 s chlSab2.chr4 46914046 1138 + 91010382 ---------aaaagattattagggacttggaaggac--agattgtaggactggtgacaatgag-ttttggggaaaaaatatgtagatgaaccacagaaaatgagccaaagtgtaagaatatttgtgcttaatatgaatgctcaccaaactatcatcaggaaggttatcaaatagatatgagggtatgaaacaaactctttaaccaggcactacattgcttgctcagaaggctaataaac--agcaacattggtgctagtagtagagaatacatataggtttagcaacatgttgaactttatcactgtcccttaccaaagcccatttagctgtcaagactattgggtgtccaacatacaagcaacaaggaccaaggctaagcacacaataacatatcctgggtgaat-aa-cagtcacctttttgtcagactcattgattttactggcgctcctctatgacaaaggcaacacggaattttgtaagtggaatctacatttat--------ccttgaattacatttgctttacctg-acatcatgtttctctgatcaccactctccattggtacattgagtgctttgtacatactgccataatatcctgttctacattgcttgtattcaaagagtttgttgtataacaaatgagtag-tatttattggatttacccggtccaccatttatcctatcactgaccaaaattattattat---agaatggcgaatattttattaaagactcaatcacagtgccagttggaaacaacggcttaaaaggttgtactcatgctagaggatgtggtggtgtat-cttctgagctagtaactaagtataagcttgtctggtgtctcccatataaaaaa-tacaaca----------------------------atctttgatctttgttatgaatgttgaagtgacttcttttttcattacatctaatgatccactccaaatacttgtctcttgtctctgagattctgggtttttgcagaattaatacccaaggggagaTTCTTAGCAGTATTCCATTTTACGATCCATCCTTCGTTAGAGGATGAGAGACTTCTATCTGGCCTTTAAGTATACTTGAGACCTGTAGACGAACAGTCAaaaatttaaaatttaaaatttaaaatGCGGCTACACTGTTGCAT-GGGTAGTAAATTTTGA----CCTTAAAAC i chlSab2.chr4 C 0 C 0 s calJac3.chr2 47272972 1086 - 204313951 ---------aaaagataattagggacttgg-aggacaaaaattaaaggactggtggcagtgag-ttttggggaagaaatatgtagatgaatcacagaaaatgggccagcatataagaatatttgtgcttaatatgaatgctcacaaaaccatcatcacgaaggttttcaaacagatatgtaggtatgaaacaatctctttcaccaggcactacattgcttgctcag-aggctaataaac--agcaacattggtggtggcagtagagaatatacataggttcagcaacatgttgaactttgccactgtcccttaccaaagcccatttagctgtcaagacgattaggtgtccaacatacaagcaacaagaaccaaggctaagtacaca-----atatcctgggtgaataaaccagtcact-ttttgtcaggctcattgattttactggagttcatctatgataaaggcaacagggagttttgcaaatgtaatccacgtgtatctgttcatccttgaattttatttgctttacc-----------tttctctgatcaccactctccatcggtacatggaatgccttatatatactgtcataatctcctgttctac-----------------------ttgtataacaaataagtagatattcattggactcacctggcccaccatttattctctcactaaccaaaat-----ttat-----------gaatattctattaaagacccaatcacagttgcagctggagacaatgg-ttataaggttgtactgatgctagaggat---gtgatgtat-gctctggactagtaactaagtatatgcttgtctgctgtctcccatgtaaaaaaatacaaca----------------------------atctttgatcttggttatgaatgatggaatgactctttttgtcaacacatctaatgatccactgcaaattcttgtctcttgtctctgagattctaggtttttgcagaattagtacccaaggggagattcttagcagtattccatttcatgatccatccttcattaga-gatgagagactgctatctggccttttaggttacctgagacctttggacaaacaatcaa-------aaaTTTGAAATTTAAAATGC-GCTACACTGTTGCATGGCATAGTAAATTCTGA----CCCTAAAAT i calJac3.chr2 C 0 C 0 s canFam3.chr4 23976961 1006 - 88276631 -----------------------------------------------------------------------aaagaaatatgtggatgaatcactgagaatgaactagagtatgagaacatctatgcttaatatgaatgcttaccaaaCTACTGTC---AAGATTATCAATCAGATAtgtaggtatgaaacactctctctcattaggcactacattgctcgttcagaaggctaacgaacaaagcaaccttcgtggtggt-gtatagaacatgcataggctcaacttcata-----------ccttgtcccacacgaaagccaatttatctgccagggctatta-gtgtccaacatgcaagcaacagtgacgaaggctaagcattcaaagatatatatcaggagaacaaactacttacc-ttttggcaggttcattgacaatattttaattcctctgtcactgcggcaacagagaatttcataactgtaatagatatctat--------tctgagattacattgtctttatctgaacaccatgcttctctgatcaccagtctccgtggacatattgaaagccttat--aggctg-cacagtatctgattttacactgcttgtatgcaaggaactctcattataacaaaatagtatgtatgcattgaacttgcctgtctcattatttaccctatcaccta--aaAATTACTCTTATCACTGAATGGTGA-----------------------------------GAGACAATAGCTTATGAGGATGGGCTGATGTTAGAGGATG-ACCGGTGTGT-GTTCTGAGCTAGTAATCAAGTATAGGCTTGTGTGG-GTCCCCCATAGAGCAAA-TACAAGAAGTTTTTTATTATAGATATTGGAGTGGTATCTTTGATCT--GTGATAGATGTCAGAGTGACACCTTTCACCATTACAGTTACTGATCCTTTTCAAAT--------------CCTGAGATTCTAGG-CTTTATTGATTTAGTACCCAA-GGAAGATCCGCAGCAGTA-TCCATTTGAATAT-------------GAATATGATAGACTGCTATGTGGCCTTTTAGGGTTCT-----------GACAAAC-------------AAATCAAAAATTTAAGAGATGGTTACATTGTTGGCTGGAGAATTGGCTCTAGAGGGGAATTAAAAT i canFam3.chr4 C 0 C 0 a score=127705.000000 s hg38.chr1_KI270765v1_alt 103611 138 + 185285 TGGTATTTGTAAGAAAAACAG-AAAGAATTCA-GGGATCCCCTTTGATGGCTCCTAATTCTATACAGTCCT---GTAAATATTCCTGaagactaaccaggcatggtggtgcacacctgtaatcccagctactccagaggctga s panTro4.chr5 117725199 138 - 182651097 TGCTATTTGTAAGAAAAACAG-AAAGAATTCA-GGGATCCCCTTTGATGGCTCTTAATTCTATACAGTCCT---ATAAATATTCATGaagactagccaggagtggtggtgcacacctgtaattccagctactccagaggctga i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48799417 138 + 183952662 TGGTATTTATAAGAAAAACAG-AAAGAATTCA-GGGATCCCCTTTGATGGCTCCTAATTCTATACAGTCCT---ATAAATATTCATGaagactagccaggcgtggtggtgcacacctgtaatcccagctactccagaggctga i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54717938 138 + 109391073 TGGTATTTGTAAGAAAAATAG-AAAGAATTCA-GGGATCCCCTTTGATGGCTCCTAATTCTATACAGTCCT---GTAAATATTCATGaagactagccaggcgtggtagtgcacacctgtaatcccagctactccagaggctga i nomLeu3.chr12 C 0 C 0 s calJac3.chr2 47274058 137 - 204313951 TGGTATTTGTAAGAAAAACGG-AAAGAATTCA-GAGATCCCTTTGGATGGCTCCTAATTCTATCCAGTCCT----TAAAAACTAATGaagactagccaggcatggtggtgcatgcctataatcccagctactccagaggttga i calJac3.chr2 C 0 C 0 s canFam3.chr4 23977967 102 - 88276631 TGCAATTTCTGAGAAAAATAATAAAGAACACAGGGGATCCCCTTGGATGGCTTATAATTCTGCCAAGTTCTGTGGTAAAAATTAATGAAGACtaat-----------------------------------------ggctaa i canFam3.chr4 C 0 C 0 e chlSab2.chr4 46915184 0 + 91010382 C e rheMac3.chr6 48575842 0 + 180491593 C e papAnu2.chr6 46570307 0 + 174439528 C e macFas5.chr6 49898701 0 + 181584905 C a score=78494.000000 s hg38.chr1_KI270765v1_alt 103749 104 + 185285 ggaag-agaatcacttgaacctgggaggcggaggttgcaatgagctgagattgtgccacttcactccagcctgggtgacagagcaagactctgtctcaaaaaaaa s panTro4.chr5 117725337 104 - 182651097 ggaag-agaatgacttgaacctgggaggcggaggttgcagtgagctgagatcatgccacttcactccagcctgggtgacagagcaagactctgtctcaaaaaaat i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48799555 104 + 183952662 ggaag-agaataacttgaacccgggaggcggagtttgcagtgagctgagatcgtgccacttcactccagcctgggtgacagagcaagactctgtctcaaaaaaaa i ponAbe2.chr5 C 0 I 27 s nomLeu3.chr12 54718076 104 + 109391073 ggaag-agaatcacttgaatctgggaggcagaggttgcagtaagctgagatcgtgccacttcactccagcctgggtgacagagcaagactctgtctcaaaaaaaa i nomLeu3.chr12 C 0 C 0 s calJac3.chr2 47274195 101 - 204313951 ggcagaagaatcacttgaagctgggaagcagaggttgcagtgagctgagagcacaccacttcactccaccctgggtgacagaa-aaga--ctgtctcaaaaaaa- i calJac3.chr2 C 0 C 0 e chlSab2.chr4 46915184 0 + 91010382 C e rheMac3.chr6 48575842 0 + 180491593 C e canFam3.chr4 23978069 0 - 88276631 C e papAnu2.chr6 46570307 0 + 174439528 C e macFas5.chr6 49898701 0 + 181584905 C a score=2096.000000 s hg38.chr1_KI270765v1_alt 103853 85 + 185285 caaaaaaaagaaGaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaTGAAGa s panTro4.chr5 117725441 27 - 182651097 ----------------------------------------------------------aaaaacaaagaaaaaaaTTAATGAAGA i panTro4.chr5 C 0 C 0 s nomLeu3.chr12 54718180 41 + 109391073 --------------------------------------------aaaaaaaaaagaaaagaaagaaACAAAAAAATTAACGAAGA i nomLeu3.chr12 C 0 C 0 s calJac3.chr2 47274296 17 - 204313951 --------------------------------------------------------------------aaaaaaaTTAATGAAGA i calJac3.chr2 C 0 C 0 e chlSab2.chr4 46915184 0 + 91010382 C e rheMac3.chr6 48575842 0 + 180491593 C e ponAbe2.chr5 48799659 27 + 183952662 I e canFam3.chr4 23978069 0 - 88276631 C e papAnu2.chr6 46570307 0 + 174439528 C e macFas5.chr6 49898701 0 + 181584905 C a score=3178.000000 s hg38.chr1_KI270765v1_alt 103938 7 + 185285 ct----gccac s panTro4.chr5 117725468 11 - 182651097 Ctaattgccaa i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48799686 7 + 183952662 ----ttgccaa i ponAbe2.chr5 I 27 C 0 s nomLeu3.chr12 54718221 11 + 109391073 Ctaattgccaa i nomLeu3.chr12 C 0 C 0 s calJac3.chr2 47274313 11 - 204313951 CAaattgctaa i calJac3.chr2 C 0 C 0 e chlSab2.chr4 46915184 0 + 91010382 C e rheMac3.chr6 48575842 0 + 180491593 C e canFam3.chr4 23978069 0 - 88276631 C e papAnu2.chr6 46570307 0 + 174439528 C e macFas5.chr6 49898701 0 + 181584905 C a score=55885.000000 s hg38.chr1_KI270765v1_alt 103945 52 + 185285 aacttggaagcaaccaagatgtccttcaataggtgactgcataagcaaactg s panTro4.chr5 117725479 52 - 182651097 aacttggaagcaaccaagatgtccttcaataggtgattacataagcaaactg i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48799693 52 + 183952662 aacttggaagcaaccaagatgtcctttaataggtgactacataagcaaactg i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54718232 52 + 109391073 atcttggaagcaaccaagatgtccttcaataggtgactacataagcaaactg i nomLeu3.chr12 C 0 C 0 s calJac3.chr2 47274324 51 - 204313951 aacttggaagctgacaagatgtccttcaacaggtgactacataagcaaaag- i calJac3.chr2 C 0 C 0 s canFam3.chr4 23978069 52 - 88276631 aacttggaagcaaccaagatatcccttaataagtgaatggataaataaacag i canFam3.chr4 C 0 C 0 e chlSab2.chr4 46915184 0 + 91010382 C e rheMac3.chr6 48575842 0 + 180491593 C e papAnu2.chr6 46570307 0 + 174439528 C e macFas5.chr6 49898701 0 + 181584905 C a score=591380.000000 s hg38.chr1_KI270765v1_alt 103997 171 + 185285 tggtatattcctacagtggaatattattcagtgc----taaaa-ggaaaaaactatcaagccacaaaaagatacagaaaaa-caaagacattttgctaagtgaaagaagccagtctgaaaagggtacatactgtg--atttcaactatacaacactctggaaaaggccaaactataaag s panTro4.chr5 117725531 172 - 182651097 tggtatattcatacagtggaatattattcagtgc----taaaa-ggaaaaaactatcaagccacaaaaagatacagaaaaaacaaatacattttgctaagtgaaagaagccagtctgaaaagggtacatactgtg--atttcaactatatgacattctgcaaaaggccaaactataaag i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48799745 172 + 183952662 tggtgtattcatacagtggaatattattcagtgc----taaaa-ggaaaaaactatcaagccacaaaaagatacagaaaaaacaaatacattttgctaagtgaaagaagccagtctgaaaagggtacatactgtg--atttcaactatacgacattctggaaaaggccaaactataaag i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54718284 172 + 109391073 tggtatattcatacagtggaatattattcagtgc----taaaa-ggaaaaaactatcaagccacataaagatatagaaaaaacaaatacattttgctaagtgaaagaagccagtctgaaaagggtacatattgtg--atttcaactatatgacattctggaaaaggccaaactataaag i nomLeu3.chr12 C 0 C 0 s rheMac3.chr6 48575842 172 + 180491593 tggtatattcatacagtggaatattattcggtga----taaga-ggaaaaaactgtcaagccacaaaaagacacagaaaagacaaatacattttgctaagtgaaagaagccagtctgaaaaggatacatactgtg--atttcaactatatgacattctggaaaaggcaaaactataaag i rheMac3.chr6 C 0 C 0 s macFas5.chr6 49898701 172 + 181584905 tggtatattcatacagtggaatattattcggtga----taaga-ggaaaaaactgtcaagccacaaaaagacacagaaaagacaaatacattttgctaagtgaaagaagccagtctgaaaagggtacatactgtg--atttcaactatatgacattctggaaaaggcaaaactataaag i macFas5.chr6 C 0 C 0 s papAnu2.chr6 46570307 172 + 174439528 tggtatattcatacagtggaatattattcggtGA----TAAGA-GGAAAAAACtgtcaagccacaaaaagacacagaaaagacaaatacattttgctaagtgaaagaagccagtctgaaaagggtACATACTGtg--atttcaactatatgacattctggaaaaggcaaaactataaag i papAnu2.chr6 C 0 C 0 s chlSab2.chr4 46915184 173 + 91010382 tggtatattcatacagtgaaatattatttggtga----taagagggaaaaaaccgtcaagccacaaaaagacacagaaaagacaaatacattttgctaagtgaaagaagccagtctgaaaagggtacatactgtg--atttcaactatatgacattctggaaaaggtaaaactataaag i chlSab2.chr4 C 0 C 0 s calJac3.chr2 47274375 173 - 204313951 tggtatattcacacagtggaatattattcagtga----taaaaagaaaaaaactatcaagccacaaaaagacacagaaaaaacaaacacattttgctaaataaaagaagccagcctgaaaagggtacatattgtg--agtccaactgtatgacattctggaaaaggcaaaactataaag i calJac3.chr2 C 0 C 0 s canFam3.chr4 23978121 168 - 88276631 tggttcatccacacaatggaatattattcagtgatttttattt-ttaaaaaa--atcaagccacagaaagtcatggaggaaacaaatgcattttattaagtgaaagaagccggtctgaaaagcccatatactgagatattccaaatatatgatattctgg--------aaactatagag i canFam3.chr4 C 0 C 0 a score=39308.000000 s hg38.chr1_KI270765v1_alt 104168 12 + 185285 acagtgaaaaga s panTro4.chr5 117725703 12 - 182651097 acagtaaaaaga i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48799917 12 + 183952662 acagtaaaaaga i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54718456 12 + 109391073 acagtaaaaaga i nomLeu3.chr12 C 0 C 0 s rheMac3.chr6 48576014 12 + 180491593 acagtaaaaaga i rheMac3.chr6 C 0 C 0 s macFas5.chr6 49898873 12 + 181584905 acagtaaaaaga i macFas5.chr6 C 0 C 0 s papAnu2.chr6 46570479 12 + 174439528 acagtaaaaaga i papAnu2.chr6 C 0 C 0 s chlSab2.chr4 46915357 12 + 91010382 acagtaaaaaga i chlSab2.chr4 C 0 C 0 s calJac3.chr2 47274548 12 - 204313951 acagtaaaaaga i calJac3.chr2 C 0 C 0 e canFam3.chr4 23978289 0 - 88276631 C a score=1784593.000000 s hg38.chr1_KI270765v1_alt 104180 760 + 185285 tcagtggttatcTTTGCAGACGCCACCATCGCTGTGAGCCCTGTACTATCAGCCATGGTCAACTCCGTCGTCTTTTTTGAAATCACCAGGGATGGCAAGCCCTTGGGCCGCATCTCCATCAAACTGTTTGCAGACAAGATTCCAAAGACAGCAGAAAACTTTCGTGCTCTGAGCACTGGAGAGAAAGGATTTCGTTATAAGGGTTCCTGCTTTCACAGAATTATTCCAGGGTTTATGTGTCAGGGTGGTGACTTCACACGCCCTAATGGCACCGGTGACAAGTCCATCTATGGGGAGAAATTTGATGATGAGAACCTCATCCGAAAGCATACAGGTTCTGGCATCTTGTCCATGGCAAATGCTGGACCCAACACAAGTGGTTCCCAGTTTTTCATCTGTGCTGCCAAGACTGAGTGGTTGGATGGCAAGCATGTGGCGTTTGGCAAGGTGAAAGAACGTGTGAATATTGTGGAAGCCACGGAGCACTTTGGGTACAGGAATAGCAAGACCAGCAAGAAGATCACCATTGCTGACTGTGGACAATTCTAATGAGTTTGACTTGTGTTTTATTTTCACCACCAGACCCATTCCTTCTGTAGCTCAGGAGAGCACCCCTCCACCACATTTGCTTGCAATATCCTAGAATCTTTGTGCTCTTGCTGCAGTTCCCTTTGGGTTCCATGTTTTCCTTGTTCCCTTCCATGCCTAGCTGGATGGCAGAGTTGAGTTAAGTTTATGATtatgaaataaaaactaagta s panTro4.chr5 117725715 759 - 182651097 tcagtggttatcTTTGCAGACGCCGCCGTCGCTGGGAGCCCTGTACTATCAGCCATGGTCAAACCCATCGTGTTTTTTGACATCGCCGTTGACGCCAAGCCCTCGGGCTGCGTCTCCATCAAACTGTTTGCAGACAAGATTCCAAAGACAGCAGAAAAGTTTCATGCTCTGAGCACTGGAGAGAAAGGATTTTGTTATAAGGGTTCCTGCTTTCACAGAATTATTCCAAGGTTTATGTGTCAGGGTGGTGACTTCACACACCATAATGGCACTGGTGGCAAGTCCATCTATGGGGAGAAATTTCATGATGAGAACCTCATCCGAAAGCATACAGGTTCTGGCATCTTGTCCATGGCAAATGCTGGACCCAACACAAATGGTTCCCAGTTTTTCATCTGCACTGCCAAGACTGAGTGTTTGGATGGCAAGCATGTGGCCTTTGGCAAGGTGAAAGAACGCATGAATATTGTGGAAGCCATGGAGCACTTTGGGTACAGGAATGGCAAGACCAGCAAGAAGATCACTATTGCTGACTGTGGACAATTCTAATGAGTTTGACTTGTGTTTTATTTTAACCACCAGACCCATTCCTTCTGTAGCTCAGGAGAACACCCCTCCACTCCATTTGCTTGCAATATCCTAGAATCTTTGTGCTCTTGCTGCAGTTCCCTTTGGGTTCCATGTTTCCCTTGTTCCCTTCCGTG-CTAGCTGGATTGCAGAGTTGAGTTAAGTTTATGATTATGAAATaaaaaccaagta i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48799929 759 + 183952662 tcagtggttatcTTTGCAGACGCCGCTGTCGCTGGGAGCCCTGTACTATCAGCCATGGTCAAACCCATCGTGTTTTTTGATATCACCGTCGACGGCAAGCCCTCGGGCCGCATCTCCATCGAACCATTTGCAGACAAGATTCCAAAGACAGCAGAAAAGTTTCGTGCTCTGAGCACTGGAGAGAAAGGATTTTGTTATAAGGGTTCCTGTTTTCACAGAATTATTCCAGGGTTTATGTTTCAGGGTGGTGACTTCACACGCCATAATGGCACTGGTGGCAAGTCCATCTATGGGGAGAAATTTCATGATGAGAACCTCATCCTAAAGCACACAGGTTCTGGCATCTTGTCCATGGCAAATGCTGGACCCAATGCAAATTGTTCCCAGTTTTTCATCTGCACTGCCAAGACTGAGTGGTTGGATGGCAAGCATGTGGCCTTTGGCAAGGTGAAAGAACACATGAATATTGTGGAAGCCATGGAGCACTTTGGGTACAGGAGTGGCAAGACCAGCAAGAAGATCACCATTGCTGACTGTGGACAATTCTAATGAGTTTGACTTGCGTTTTATTTTAACCACCAGACCCATTCCTTCTGTAGCTCAGGATAGCACCCCTCCACCACATTTGCTTGCAATATCCTAGAATCTTTGTGGTCTTGCTGCAGTTTCCTTTGAGTTCCATGTTTTCCTTGTTCCCTTCCATG-CTAGCTGGATTGCAGAGTTGAGTTAAGTTTATGATTATGAAATAAAAACTAACTA i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54718468 760 + 109391073 tctgtggttgtcTTTGCAGACGCTGCCATCACTGGGAGCCCTGTACTATCAGCCATGGTCAACTCCATCATGTTTTTTGACATCACCGTCGATGGCAAGCCCTTGGGCCACGTCTCCATCAAACTGTTTGCAGACAAGATTCCAAAGACAGCAGAAAAGTTTCGTGCTCTGAGCACTGGAGAGAAAGGATTTTGTTATAAGGGTTCCTGCTTTCACAGAATTATTCCAGGGTTTATGTGTCAGGGTGGTGACTTCACAAGCCATAATGGCACTGGTGGCAAGTCCATCTATGGGGAGAAATTTGATGATGAGAACCCCATCCTAAAGCATACAGGTTCTGGTATCTTGTCCATGGCAAATGCTGGACCCAACACAAATCGTTCCCAGTTTTTCATCTGCACTGCCAAGACTGAGTGGTTGGATGGCAAGCATGTGGCCTTTGGCAAGGTGAAAGAACTCACGAATATTGTGGAAGCCATGGAGCACTTTGGGTACAGGAATAGCAAGGCCAGCAAGAAGATCACCATTGCTCACTGTGGACAATTCTAATGAGTTTGACTTGTGTTTCATTTTAACCACCAAACCCATTCCTTCTGTAGCTCAGGAGAGCACCCCTCCACCACATTTGCTTGCAATATCCTAGAATCTTTGTGCTCTTGCTGCAGTTCCCTCTGGGTTCCATGTTTTCCTTGTTCCCTTCCATGCCTAGCTGGATTGCAGAGTTGAGTTAAGTTTATGATtatgaaataaaaactaagta i nomLeu3.chr12 C 0 C 0 s rheMac3.chr6 48576026 753 + 180491593 tcagtggttatcTTTGCAGATGCCGCCGCCACTGGGAGTCCTGTACTGTCAGCTATGGTCAACCCCATCGTGTTATTCGACATCACCATCGACGGCAAGCCCTGGGGCCACGTCTCCTTCAAGCTGTTTGCAGACAAGATTCCAAAGACAGCAGAAAACTTTCGTGCTCTGAGCACTGGAGAGAAAGGATTTGGTTATAAGGGTTCCTGCTTTCACAGAATTATTCCAGGGTTTATGTGTCAGGGTGGTGACTTCACATGCCATAATGGCACTGGTGGAAAGTCCATCTATGGGAAGAAATTTGATGATGAGAACCTCATCCTAAAGCATACAGGTTCTGCCATCTTGTACATGGCAAATGCTGGACCCAACACAGATGGTTCCCAGTTTTTCATCTGCACTGCCAAGACTGAGTGGTTGGGC-GCAAGCATGTGGCCTTTGGCAAGGTGAAAGGAGGCATGAACATTGTGGAAGCCATGGAGCACTTTGGGTCCAGGAATGGCAGGACAAGCAAGAAGATCACCATTGCTGACTGTGGACAATTCTAATGAGTTTGACTTGTGTTTTATTTTAACCACCAGA-TCGTTCCTTCTGTAGCTCAGGAGAGCACCCCTCCACCACATTTGCGTGCAGTATCCTAGAATTTTTGTGCTCTCGCTGCAGTTCCCTTTGGGTTCCACGTTTTCCTGGTTCCCTTCCATGCCTAGCTGGATTGCA-----GAGCTAAGTTTATGATtatgaaataaaaactaagta i rheMac3.chr6 C 0 C 0 s macFas5.chr6 49898885 753 + 181584905 tcagtggttatcTTTGCAGATGCCGCCGCCACTGGGAGTCCTGTACTGTCAGCCATGGTCAACCCCATCGTGTTATTCGACATCACCATCGACGGCAAGCCCTGGGGCCGCGTCTCCTTCAAGCTGTTTGCAGACAAGATTCCAAAGACAGCAGAAAACTTTCGTGCTCTGAGCACTGGAGAGAAAAGATTTGGTTATAAGGGTTCCTGCTTTCATAGAATTATTCCAGGGTTTATGTGTCAGGGTGGTGACTTCACATGCCATAATGGCACTGGTGGCAAGTCCATCTATGGGAAGAAATTTGATGATGAGAACCTCATCCTAAAGCATACAGGTTCTGCCATCTTGTACATGGCAAATGCTGGACCCAACACAGATGGTTCCCAGTTTTTCATCTGCACTGCCAAGACTGAGTGGTTGGGC-GCAAGCATGTGGCCTTTGGCAAGGTGAAAGGAGGCATGAACATTGTGGAAGCCATGGAGCACTTTGGGTCCAGGAATGGCAGGACGAGCAAGAAGATCACCATTGCTGACTGTGGACAATTCTAATGAGTTTGACTTGTGTTTTATTTTAACCACCAGA-TCGTTCCTTCTGTAGCTCAGGAGAGCACCCCTCCACCACATTTGCGTGCAGTATCCTAGAATTTTTGTGCTCTCCCTGCAGTTCCCTTTGGGTTCCACGTTTTCCTGGTTCCCTTCCATGCCTAGCTGGATTGCA-----GAGCTAAGTTTATGATTATGAAATAAAAACTAAGTA i macFas5.chr6 C 0 C 0 s papAnu2.chr6 46570491 753 + 174439528 tcagtggttatcTTTGCAGACGCCGCCGCCACTGGGAGTCCTGTACTGTCAGCCATGGTCAACCCCATCGTGTTATTCGACATCACCATCGATGGCAAGCCCTTGGGCCGCGTCTCCTTCAAGCTGTTTGCAGACAAGattccaaagacagcagaaaactttcgtgctctgagcactggagagaaaagatttggttataagggttcctgctttcatagaattattccagggtttaTGTGTCAGGGTGGTGACTTCACATGCCATAATGGCACTGGTGGCAAGTCCATCTATGGGGAGAAATTTGATGATGAGAACCTCATCCTAAAGCATACAGGTTCTGCCATCTTGTACATGGCAAATGCTGGACCCAACACAGatggttcccagtttttcatctgcactgccaagacTGAGTGGTTGGAC-GCAACCATGTGGCCTTTGGCAAGGTGAAAGGAGGCATGAACATTGTGGAAGCCATGGAGCACTTTGGGTCCAGgaatggcaagaccagcaagaagATCACCATTGCTGACTGTGGACAATTCTAATGagtttgacttgtgttttattttaaccaCCAGA-TCGttccttctgtagctcaggagagcACCCCTCCACCACATTTGCGTGCAGTATCCTAGAATTTTTGTGCTGTCGCTGCAGTTCCCTTTGGGTTCCACGTTTTCCTTGTTCCCTTCCATGCCTAGCTGGATTGCA-----GAGCtaagtttatgattatgaaataaaaactaagta i papAnu2.chr6 C 0 C 0 s chlSab2.chr4 46915369 753 + 91010382 tcagtggttatctttgcagacgccgcagccactgggagTCCTGTACTATCAGCCATGGTCAACCCCATCGTGTTATTCGACATCACCATCGACGGCAAGCCCTTGGGCCGCGTCTCCTTCAAGCTGTTTGCAGACAAGATTCCAAAGACAGCAGAAAACTTTCGTGCTCTGAGCACTGGAGAGAAAAGATTTGGTCATAAGGGTTCCTGCTTTCATAGAATTATTCCAGGGTTTATGTGTCAGGGTGGTGACTTCACATGCCATAATGGCACTGGTGGCAAGTCCATCTGTGGGGAGAAATTTGATGATGAGAACCTCATCCTAAAGCATACAGGTTCTGCCATCTTGTACATGGCAAATGCTGGACCCAACACAGATGGTTCCCAGTTTTTCATCTGCACTGCCAAGACTGAGTGGTTGGAT-GCAAGCATGTGGCCTTTGGCAAGGTCAAAAGAGGCATGAACATTGTGGAAGCCATGGAGCACTTTGGGTCCAGGAATGGCAAGACCAGCAAGAAGATCACCATTGCTGACTGTGGATGATTCTAATAAGTTTGACCTGTGTTTTATTTTAACCACCAGA-TCGTTCCTTCTGTAGCTCAGGAGAGCACCCCTCCACCACATTTGCGTGCAGTATCCTAGAATTTTTGTGCTCTCGCTGCAGTTCCCTTCGGATTCCACGTTTTCCTTGTTCCCTTCCATGCCTAGCTGGATTGCA-----GACCTAAGTTTATGATtatgaaataaaaactaagta i chlSab2.chr4 C 0 C 0 e calJac3.chr2 47274560 0 - 204313951 C e canFam3.chr4 23978289 0 - 88276631 C a score=32083.000000 s hg38.chr1_KI270765v1_alt 104940 22 + 185285 acaacaacaacaacaaaaaagc----- s panTro4.chr5 117726474 21 - 182651097 acaacaacaacaac-aaaaaga----- i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48800688 20 + 183952662 ACAGCAACAACAA--aaaaaga----- i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54719228 22 + 109391073 acaacaacaacaacaacaaaaa----- i nomLeu3.chr12 C 0 C 0 s rheMac3.chr6 48576779 20 + 180491593 acaataacaacaa--caaaaga----- i rheMac3.chr6 C 0 C 0 s macFas5.chr6 49899638 20 + 181584905 ACAACAACAACAA--Caaaaga----- i macFas5.chr6 C 0 C 0 s papAnu2.chr6 46571244 20 + 174439528 acaacaacaacaa--caacaga----- i papAnu2.chr6 C 0 C 0 s chlSab2.chr4 46916122 20 + 91010382 acaacaacaacaa--caaaaga----- i chlSab2.chr4 C 0 C 0 s canFam3.chr4 23978289 22 - 88276631 ---acaataagaa--acatatagagca i canFam3.chr4 C 0 C 0 e calJac3.chr2 47274560 0 - 204313951 C a score=753881.000000 s hg38.chr1_KI270765v1_alt 104962 249 + 185285 tcagtggttgccaggagtttggggatgggtagggagataaacagttctgaaacag-gcgatttttaggggattgaaa--atacgttggtaataatgtaatgatgggtacatgacattatgcgttttgcaaaactcctagacctgtaccacacaaagagtgaactctaatgtaa-------------------------------------------------------------------------------------------actgggggtgggataaaggtga---------cagtatgtgagaactctgtactttctgctcgatctttccataaagctaaaactgctc- s panTro4.chr5 117726495 249 - 182651097 tcagtggttgccaggggtttggggatgggtagggagataaatagttctgaaacag-gcgatttttaggggattgaaa--atagtttggtaataatgtaatgatgggtacatgacattatgcattttgcaaaactcataggcctgtaccacacaaagagtgaaccctaatgtaa-------------------------------------------------------------------------------------------actgggggtgggataaaggtga---------gagtatatgagaactctgtactttctgctcgatctttccataaagctaaaacagctc- i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48800708 249 + 183952662 tcagtggttgccaggggtttggggttgggtagggagataaatagttctgaaacag-gcgatttttaggggactgaaa--atactttggtaataatgtaatgatgggtacatgacattatgcgttttgcaaaactcatagacctgtaccacacaaagagtgaaccctaatgtaa-------------------------------------------------------------------------------------------actgggggtgggataaaggtga---------gagtatgtgagaactctgtactttctgctcgatctttccataaagctaaaattgctc- i ponAbe2.chr5 C 0 I 1 s nomLeu3.chr12 54719250 249 + 109391073 ttaatggttgccaggggtttggggatgggtagggagataaatagttctgaaacag-gtgatttttaggagattgaaa--atactttggtaataatgtaatgatgggtacatgacattatgcattttgcaaaactcatagacctgtaccacacaaagagcgaaccctaatataa-------------------------------------------------------------------------------------------actgggggtgggataaaggtga---------tagtatgtgagaactctgtactttctgctcgatctttccataaagctaaaactgctc- i nomLeu3.chr12 C 0 C 0 s rheMac3.chr6 48576799 239 + 180491593 tcagtggttgccaggggtttggggatgggtagggagataaatagttctgaaatag-gtgatttttaggggattgaaa--atactttggtaataatgtaatgatgggtagttaacattatgcattttgcaaaactcatagacctgtaccacacaaagagtgaaccctaatgtaa-------------------------------------------------------------------------------------------actgggggtgggataaagg-------------------tgagaattctgtactttctgctcgatctttccacaaagctaaaactgctc- i rheMac3.chr6 C 0 C 0 s macFas5.chr6 49899658 239 + 181584905 tcagtggttgccaggggtttggggatgggtagggagataaatagttctgaaatag-gtgatttttaggggattgaaa--atactttggtaataatgtaatgatgggtagttaacattatgcattttgcaaaactcatagacctgtaccacacaaagagtgaaccctaatgtaa-------------------------------------------------------------------------------------------actgggggtgggataaagg-------------------tgagaattctgtactttctgctcgatctttccacaaagctaaaactgctc- i macFas5.chr6 C 0 C 0 s papAnu2.chr6 46571264 239 + 174439528 tcagtggttgccaggggtttggGGATGGGTAGGGAGGTAAATAGTTCTGAAATAG-GTGATTTTTAGGGGATTGAAA--ATACTTTGGTAATAATGTAATGATGGGTACTTGACATTATGCATTTTGCAAAACTCATAGACCTGTACCacacaaagagtgaaccctaatgtaa-------------------------------------------------------------------------------------------actgggGGTGGGATAAAGG-------------------TgagaactctgtactttctgctcgaTCTTTCCACAAAGCTAAAACTGCTC- i papAnu2.chr6 C 0 C 0 s chlSab2.chr4 46916142 239 + 91010382 tcagtggttgccaggggtttggggatgagtagggagataaatagttctgaaatag-gtgatttttaggggattgaaa--atactttggtaataatgtaatgatgggtacttgacattatgcattttgcaaaactcatagacctgtaccacacaaagagtgaaccctaatgtaa-------------------------------------------------------------------------------------------aCtgggggtgggataaagg-------------------tgagaactctgtactttctgctcgatctttccacaaagctaaaactgctc- i chlSab2.chr4 C 0 I 1704 s calJac3.chr2 47274560 248 - 204313951 tcagtagttgccagggagtgggggaaggttagggagataaatagttctg-aacag-aggatttttttgggagtgaaa--atattttggtagtaatgtagtggtgagtacataacattttacgtttcataaaactcatagacctgtaccacacaaagagtgaaccctaatgtaa-------------------------------------------------------------------------------------------actagggatgggatgaggctga---------gagtatgtgagaactctgtactttctgctctatctttccataaagctataactgcta- i calJac3.chr2 C 0 C 0 s canFam3.chr4 23978311 343 - 88276631 ttagcaattgccaggagttggggga-----agggggatagataag--tggaacagagtagatgttaggactttaaaaccattcttgaatgatgctgtaatggtacatacatgacattatatatttggcaaaactc--agatttatacaacacaaagagtggg-gctaatgtaaaggaggaactttagttaataataacatcaatattggttcatcaattttaaccaatgaaccgtaccagcacaaggtgctaaaaattacagagactaggggttggagggaaatgaacaaaaggggcatacatagaaactctatcccttcttttcaacttttctgtaaacctaaaactgctgt i canFam3.chr4 C 0 C 0 a score=799263.000000 s hg38.chr1_KI270765v1_alt 105211 245 + 185285 aaaaaataaagtctatta--ttttgttaaaTGAAAGAAATTAACAATGACCATGGCACGCTCACACAAAAAgattatcaaggacatttctctgtcaggaatgaatatttggtca-tctcacaaggcaaaaccctgactagcagaggtgttagctgagggcaca-tggCCATAGATGCCAATAGTGACCTGCTGGCCACTTGCAGAAAGGAGAGCCTTTACATCCAAACACATTGTTTCTCTTGTATTGT s panTro4.chr5 117726744 245 - 182651097 aaaaaataaagtctatta--tttttttaaaTGAAAGAAATTAACAATGACCATAGCACGCTCACACAAATAGATTATCGAGGACATTTCTCTGtcaggaatgaatactgggtca-tctcacaaggtaaaaccctgactagcagaggtgttagctgagggcaca-tggCTGTAGATGCCAACAGTGACCTGATGGCCACTTGCAGAAGGGAGAGCCTTGACATCCAAACACATTGTTTCTCGTGTATTGT i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48800958 240 + 183952662 aaaaaataaagtctatt---tttttaaaaaTGAAAGAAATTAACAATGACCATAGCACGCTCAC----ATAGATGATCGAGGACATTTCTCTGtcaggaatgaatattgggtca-tctcacaaggtaaaaccctgactagcagaggtgttagctgagggcaca-tggccatcgatgccaacagtgaccttgtggccacttgcagaaaggagagccttgacatccaaacacattgtttctcttgtattgt i ponAbe2.chr5 I 1 C 0 s nomLeu3.chr12 54719499 232 + 109391073 aaaaaataaagtctatta--tttttttaaaTGAAAGAAATTAACAATGACCATGGCACGCTCACATAAATAGATTTTTGAGGACATTTCTCTCt-------------ttggtca-tctcacaaggcaaaaccctgactagcagaggtgttagctgagggcaca-tggccatagatgccaacagtgacctggtggccacttgcagaaaggagagccttgacatccaaacacattgtttctcttgtgctgt i nomLeu3.chr12 C 0 C 0 s rheMac3.chr6 48577038 243 + 180491593 aaaaaatagagtctat----ttttttaaaaTGAAAGAAATTAACAATGACCATGGCATGCTCACACAAATAGATTATCGAGGACATTTTTCTGtcaggaatgaatattgggtca-tctcacaaggtaaaaccctgactagcagaggtgttagctgagggcata-tggccatagatgccaacagtgacctggtggccacttgtagaaaggagagccttgacatccaaacacattgtttctcttgtattgt i rheMac3.chr6 C 0 C 0 s macFas5.chr6 49899897 243 + 181584905 aaaaaatagagtctat----ttttttaaaaTGAAAGAAATTAACAATGACCATGGCATGCTCACACAAATAGATTATCGAGGACATTTTTCTGtcaggaatgaatattgggtca-tctcacaaggtaaaaccctgactagcagaggtgttagctgagggcata-tggccatagatgccaacagtgacctggtggccacttgtagaaaggagagccttgacatccaaacacattgtttctcttgtattgt i macFas5.chr6 C 0 C 0 s papAnu2.chr6 46571503 243 + 174439528 AAAAAATagagtctat----tttttaaaaatgaaagaaattaacaaTGACCATGGCATGCTCACACAAATAGATTATCGAGGACATTTTTCTGTCAGGAATGAATATTGGGTCA-TCTCACAAGGTAAAACCCTGACTAGCAGAGGTGTTAGCTGAGGGCATA-TGGCCATAGATGCCAACAGTGACCTGGTGGCCACTTGTAGAAAGGAGAGCCTTGACATCCAAACACATTGTTTCTCTTGTATTGT i papAnu2.chr6 C 0 C 0 s chlSab2.chr4 46918085 243 + 91010382 AAAAAATAAAGTCTAT----TTTTTTTAAATGAAAGAAATTAACAATGACCATGGCATGCTCACACAAATAGATTATTGAGGACATTTTTCTGtcaggaatgaatattgggtca-tctcacaaggtaaaaccctgactagcagaggtgttagctgagggcata-tggccatagatgccaacagtgacctggtggccacttgtagaaaggagagccttgacatccaaacacattgtttctcttgtattgt i chlSab2.chr4 I 1704 C 0 s calJac3.chr2 47274808 245 - 204313951 aaaaactgaagtctgtta--gtttctttaaTGAAAGAAATTAACAATGACCATAGCAAGCTCACACAAATAGATTATTGAGGACATTTCCCTGTCAGGAATGAATATTGGGTTA-GCTCACAAAGTAACACTTTAACTAACAGAAGTGTTAGCTGAGGGCACA-TGGCCATAGATGCCGACAGTGACCTAGTGACCACTTGTAGAAAGAAGAGCCTTGACATCCAACCACCTTGTTTCTCTTGTATTAT i calJac3.chr2 C 0 C 0 s canFam3.chr4 23978654 240 - 88276631 aaaaaataaagtctattgattttgttaaaaTAAAATA-------AATGTCCACGGCAAGCTCATGCAAGTAGATTATGAAGGAC--CTTTCTGTCAAGAATGAAGAGTTGGTCACTGTAACAACAGAAAGCTCTGACTAGCAGAGATGTCAGCAGAGGGCACATTGGTCATAGCTGCCAATAATAACCTGCTGATCATTCACAGAAACGAAGTCCTTAACTTCTACCCACATATATTTTCTTGCACTGC i canFam3.chr4 C 0 I 148 a score=1128177.000000 s hg38.chr1_KI270765v1_alt 105456 342 + 185285 CCTGTGC---------------------------------------------------------------------ATACTTATGTATCTTAACAACTTTC----CTTCTTTCCTCTCCATTTATCCCTCTTTTTAAAACAGGGCTTATTGAGGGTGATTAACTTAATTTTTAAATGATATATGGCAGAATGTCAAGAGAGTATAGTGAAGAACTTCGTAGAGGAATGGACATAACCCAGAATTCTTAGACTT-AGAGTACATGCTGTGATTGAGAATTTTTTA--TTGTTTCATTGTTCAAGAGATTGTAGGTACATGTTCAATTATTAGAGAAATAGTTGCACTCTGTTAGAAGGAAGCTTGGGTCTTTCGTGTTTACTTTCAAAAGGGAAAGTTTATATTGATATTGAGCAAGTT s panTro4.chr5 117726989 341 - 182651097 CTTGTGC---------------------------------------------------------------------ATACTTATGTATCTTAACAAGTTTC----CTTCTTTCCTCTCCATTTATCCCTCTTTTTAAAACAGGGCTTATTGAGGGTGATTAACTTAATTTTTAAGTGATATGTGGCAGAATGTCAAGAGAGTATAGTGGAGAACTTCGTA-AGGAATGGACATAACCCAGAATTCTTAGACTC-AGAGTACATGCTGTGATTGAGAATTTTTTA--TTGTTTCATTGTTCAAGAGATTGTAGGTACATGTTCAATTATTAGAGAAATAGTTGCACTCTGTTAGAAGGAAGCTTGGGTCTTTTGTGTTTACTTTCAAAAGGGAAAGTTTATATTGATATTGAACAAGTT i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48801198 342 + 183952662 cttgtgc---------------------------------------------------------------------atacttatgtatcttaacaaatttc----cttctttcctctccatttatccctctttttaaaacagggcttattgaggatgattaacttaatttttaaatgatatatggcagaatgtcaagagagtatagtggagaacttcatggaggaatggacataacccagaattcttagactc-agagtacatgctatgattgagaatttttta--ttgtttcattgttcaagagattgtaggtacatgttcaattattagagaaatagttgcactctgttacaaggaagcttggatcttttgtgtttacttTCAAAAGGGAAAGTTTATATTGATATTGAGCAAGTT i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54719731 343 + 109391073 cttgtgc---------------------------------------------------------------------atacttatgtatcttaacaagtttc----cttttttcctctctgtttatccctctttttaaaacagggcttattgagggtgattaacttaatttttaaatgatatatggcagaatgtcaagagagtatagtgaagaacttcgtagaggaatggacataacccagaattcttagactcaagagtacatgctgtggttgagaatttttta--ttgtttcattgttcaagagattgtaggtacgtgttcaattattagagaaacagttgcactctgttagaaggaagcttgggtcttttgtgtttacttTCAAAAGGGAAAGTTTATATTGATATTGAGCAAGTT i nomLeu3.chr12 C 0 C 0 s rheMac3.chr6 48577281 340 + 180491593 cttgtgc---------------------------------------------------------------------atacttatgtatcttaacaagtttc----cttctttcctcttcatttatccctctttttaaaacagggcttattgagggtgattaacttaatttttaaatgatatatggcagaatgtcaagagagtatactgaagaacttcgtagaggaatggacatcacccagaATTCTTAGACTC-AGAGTACATGCTGTGATGGAGAA-TTTTTA--TTGTTTCATTGTTCAAGAGATTGTAGGTACATGTTCAATTACTAGAGAAATAGTTGCACTCTGTTATAAGGAATCCTGGGTCTTT-GTGTTTACTTTCAAAAGAGAAAGTTTATATTGATATTGAGCAAGTT i rheMac3.chr6 C 0 C 0 s macFas5.chr6 49900140 340 + 181584905 cttgtgc---------------------------------------------------------------------atacttatgtatcttaacaagtttc----cttctttcctcttcatttatccctctttttaaaacagggcttattgagggtgattaacttaatttttaaatgatatatggcagaatgtcaagagagtgtactgaagaacttcatagaggaatggacatcacccagaATTCTTAGACTC-AGAGTACATGCTGTGATGGAGAA-TTTTTA--TTGTTTCATTGTTCAAGAGATTGTAGGTACATGTTCAATTACTAGAGAAATAGTTGCACTCTGTTATAAGGAATCCTGGGTCTTT-GTGTTTACTTTCAAAAGAGAAAGTTTATATTGATATTGAGCAAGTT i macFas5.chr6 C 0 C 0 s papAnu2.chr6 46571746 340 + 174439528 CTTGTGC---------------------------------------------------------------------ATACTTATGTATCTTAACaagtttc----cttctttcctcttcattTATCCCTCTTTTTAAAACAGGGCTTATTGAGGGtgattaacttaatttttaaatgatatatggCAGAATGTCAAGAGAGTATACTGAAGAACTTCGTAGAGGAATGGACATCACCCAGAATTCTTAGACTC-AGAGTACATGCTGTGGTggagaa-ttttta--ttgtttcgTTGTTCAAGAGATTGTAGGTACATGTTCAATTACTAGAGAAATAGTTGCACTCTGTTATAAGGAATCTTGGGTCTTT-GTGTTTACTTTCAAAAGAGAAAGTTTATATTGATATTGAGCAAGTT i papAnu2.chr6 C 0 C 0 s chlSab2.chr4 46918328 340 + 91010382 cttgtgc---------------------------------------------------------------------atacttatgtatcttaacaagtttc----cttctttcctcttcatttatccctctttttaaaacagggcttattgagggtgattaacttaa-ttttaaatgatatatggcagaatgtcaagagggtatactgaagaacttcgtagaggaatggacatcacccagaATTCTTAGACTC-AGAGTGCATGCTCTGATGGAGAATTTTTTA--TTGTTTCATTGTTCAAGAGATTGTAGGTACATGTTCAATTACTAGAGAAATAGTTGCACTCTGTTATAAGGAACCCTGGGTCTTT-GTGTTTACTTTCAAAAGAGAAAGTTTATATTGATATTGAGCAAGTT i chlSab2.chr4 C 0 C 0 s calJac3.chr2 47275053 342 - 204313951 CTTGTGC---------------------------------------------------------------------ATACTTATGTAACTTAACAAGTTTT----CTTCTTTCCTCTCCATTTATCCCTCTTTTTAAAACAGAGCTTAATGAGATTGATTAACATAATTTTTAAATGATAGATGGCAGAATATCAAGAGAGTAGAGTGGAGAACTTCATAGAGGAATGGACACCACCCAGCATTTTTGGACTC-AGAGTACACACTGCAATTGAAATTTTTTTA--TTGTTTCATTGTTCAAGGTATTGTAGGTACATGTTCAATTGTTAGAGAAATAGTTGTGCTCTGTTAGAAGGAAGCTTGGGTCTTTTGTGTTTACTTTCAAAAGGGAAAGTTTATATTGATATTGAGCAAGTT i calJac3.chr2 C 0 C 0 s canFam3.chr4 23979042 399 - 88276631 cctgggccaaaggcaggtgtgaaaccactgagacacccagggatcccTGGTATATCTATATTTTTATGTGTATTTTATATTTATGTATCTTAACAAATTTCCCCTCTTCTTTCCTCTTTGTTTTCCCCTCTTTTT-GTGTAGGATATATTGGGAGTGGTTAGCTTAATTTTAAAACCATACATAACAAAATATCAAAATAGTATAGTGATGGGTTTAgaagaggaatggacctcacccagaattcttggactt-ggggtagttactgtgactgatgagattttgatttgttcccttgtggaagagA------------GTTCGGCCATTGAAAAAATAGGGGCA-TCTCTTAGGAGGAAGGATGAGTCTTT-GTTTTTAA---AATAAAGAAGAGTTTATGTTGATAATGAACAAATC i canFam3.chr4 I 148 I 642 a score=513982.000000 s hg38.chr1_KI270765v1_alt 105798 142 + 185285 AAAGCATGAATAT---TTACTATTTGATGTTTGttcctgtgtttgaggaattcctcagcctctcagttttgacgaaaacaagaaaccacctcct--gctttagaagctaaaatgtcaaatgcttgctttctcagcctcctttgcagc s panTro4.chr5 117727330 142 - 182651097 AAAGCATGCATAT---TTATTATTTGATGTTTGtttctgtgtttgaggaattcctcagcctatcagttttgacgaaaacaagaaaccacctcct--gctttagaagctaaaatgccaaatgcttgctttctcagcctcctttgcagc i panTro4.chr5 C 0 I 139 s ponAbe2.chr5 48801540 142 + 183952662 AAAGCATGAATAT---TTATTATATGATGTTTGtttctgtgtttgaggaattcctcagcctatcagtttcgacgaaaacaagaaaccacctcct--gctttagaagctaaaatgccaaatgcttgctttctcagcctcctttgcagc i ponAbe2.chr5 C 0 I 139 s nomLeu3.chr12 54720074 142 + 109391073 AAAGCATGAATAT---TTATTATTTGATGTTTGtttctgtgtttgaggaattcctcagcctatcagttttgacgaaaacaagaaaccacctcct--gctttagaagctaaaatgccaaatgcttgctttctcagcctcctttgcagc i nomLeu3.chr12 C 0 I 139 s rheMac3.chr6 48577621 141 + 180491593 AAAGCATCAATAT---TTATTATTTGATG-TTGtttctgtgtttgaggaattcctcagcctatcagttttgacggaaacaagaaaccacctcct--gttttagaagctaaaatgccaaatgcttgctttctcagcctcctttgcagc i rheMac3.chr6 C 0 I 139 s macFas5.chr6 49900480 141 + 181584905 AAAGCATGAATAT---TTATTATTTGATG-TTGtttctgtgtttgaggaattcctcagcctatcagttttgacggaaacaagaaaccacctcct--gttttagaagctaaaatgccaaatgcttgctttctcagcctcctttgcagc i macFas5.chr6 C 0 I 140 s papAnu2.chr6 46572086 141 + 174439528 AAAgcatgaatat---ttattatttgatg-ttgtttctgtgtttgaggaattCCTCAGCCTATCAGTTTTGACGGAAACAAGAAACCACCTCCT--GTTTTAGAAGCTGAAATGCCaaatgcttgctttctcagcctcctttgcagc i papAnu2.chr6 C 0 I 139 s chlSab2.chr4 46918668 141 + 91010382 AAAGCATGAATAT---TTATTATTTGATG-TTGtttctgtgtttgaggaattcctcagcccatcagttttgacggaaacaagaaaccacctcct--gttttagaagctaaaatgtcacatgcttgctttctcagcctcctttgcagc i chlSab2.chr4 C 0 I 139 s calJac3.chr2 47275395 141 - 204313951 AAAGCATGAATAT---TTATTATTTAATGTCTGtttctatgtttaaggaattcctcagcctatcagttt-gacaaaaacaagaaaccacctcct--gctttagaagctaaaatgccaaatgcttgctttctcagcctcctttgcagc i calJac3.chr2 C 0 I 138 s canFam3.chr4 23980083 145 - 88276631 AAAGCATGGATATTTATTATTATTTGAAGTCTGTTGC--TTTTGGAGAAACACCTTAGCCTGTCAGTCTTGATGGGAGCAAGAGACCATCTCTTTAGCCTGAGTagctaaaatgccaaatgcttgctttctcagcctcctttgcagc i canFam3.chr4 I 642 C 0 a score=8190.000000 s hg38.chr1_KI270765v1_alt 105940 2 + 185285 ta s panTro4.chr5 117727611 2 - 182651097 ta i panTro4.chr5 I 139 C 0 s ponAbe2.chr5 48801821 2 + 183952662 ta i ponAbe2.chr5 I 139 C 0 s nomLeu3.chr12 54720355 2 + 109391073 ta i nomLeu3.chr12 I 139 C 0 s rheMac3.chr6 48577901 2 + 180491593 ta i rheMac3.chr6 I 139 C 0 s macFas5.chr6 49900761 2 + 181584905 ta i macFas5.chr6 I 140 C 0 s papAnu2.chr6 46572366 2 + 174439528 TA i papAnu2.chr6 I 139 C 0 s chlSab2.chr4 46918948 2 + 91010382 ta i chlSab2.chr4 I 139 C 0 s calJac3.chr2 47275674 2 - 204313951 ta i calJac3.chr2 I 138 C 0 s canFam3.chr4 23980228 2 - 88276631 ta i canFam3.chr4 C 0 I 137 a score=966882.000000 s hg38.chr1_KI270765v1_alt 105942 278 + 185285 TCTGTTGCAAAGCGAACAAGTGGGAGTGGTGCTGGTGGCTTTGCAGTTAGCCTAGGATTGAGCAATTGCTGCAATTGTTGCTCTCTGC-ATcttcggtgttacttcttactggtggtgacagtggtttcctccctggatgagttctacagcatggtttggggtacatttcctggctgcctagctttga-tctggctctctagccttctcaacagt--tctacaagttcc--ccactatttctgtgataaacctatttattgttaatgtcagccataattggctt s panTro4.chr5 117727613 278 - 182651097 tctgttgcatagggaacaagtgggagtggtgctggtggctttgcagttagcctaggattgagcaattgctgcaactgttgctctctgc-agcttcagcgttacttcttactggtggtgacagtggtttcctccctggatgagttctacagcatggtttggggtacatttcctggctgcctagctttga-tctggctttctagccttctcaacagt--tctacaagttcc--ccactatttctgtgataaaactatttattgttaatgtcagccataactggctt i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48801823 278 + 183952662 tctgttgcatagcgaacaagtgggagtggtgctggtggctttgcagttagcctaggattgagcaattgctgcaattgttgctctctgc-agcttcagcattacttcttactggtggtgacagtggtttcctccctggatgagttctacagcatggtttggggtacatttcctggctgcctagctttga-tctggctttctagccctctcaacagt--tctacaagttcc--ccactatttttgtgataaacctatttattgttaatgtcagccataattggCAT i ponAbe2.chr5 C 0 I 9 s nomLeu3.chr12 54720357 278 + 109391073 tctgctgcaaagcgaacaagtgggagtggtgctggtggctttgcagttagcctaagattgagccattgctgcaattgttgctctctgc-agcttcagtgttacttcttactggtggtgacagtggtttcctccctggatgagttctacagcatggtttggggtacatttcctggctgcctagctttga-tctggctttctagccttctcaacagt--tctacaagttcc--ccactatttctgtgataaacctatttattgctaatgtcatccataattggctt i nomLeu3.chr12 C 0 C 0 s rheMac3.chr6 48577903 278 + 180491593 tctgttgcacagcgaacaagtgggagtggagctggtggcttcccagttagtctaggattgagcaattgctgcaattgctgctctctgc-agcttcagcattacttcttactggtggtgacagtggtttcctccctggatgagttctacagcatggtttggggtacatttcctggctgcctagctttga-tctggctttctagccttctcaacagt--tctacaagctcc--ccactatttctgtgataaacctatttattgttaatgtcagccataattggctt i rheMac3.chr6 C 0 C 0 s macFas5.chr6 49900763 278 + 181584905 tctgttgcacagcgaacaagtgggagtggagctggtggcttcccagttagtctaggattgagcaattgctgcaattgctgctctctgc-agcttcagcattacttcttactggtggtgacagtggtttcctccctggatgagttctacagcatggtttggggtacatttcctggctgcctagctttga-tctggctttctagccttctcaacagt--tctacaagctcc--ccactatttctgtgataaacctatttattgttaatgtcagccataattggctt i macFas5.chr6 C 0 C 0 s papAnu2.chr6 46572368 280 + 174439528 TCTGTTGCACAGCGAACAAGTGGGAGTGGAGCTGGTGGCTTCCCAGTTAGTCTAGGATTGAGCAATTGCTGCAATTGCTGCTCTCTGC-AGCTTCAGCATTACTTCTTACTGGTGGTGACAGTGGTTTCCTCCCTGGATGAGTTCTACAGCATGGTTTGGGGTACATTTCCTGGCTGCCTAGCTTTGA-TCTGGCTTTCTAGCCTTCTCAACGGTTCTCTACAAGCTCC--CCACTATTTCTGTGATAAACCTATTTGTTGTTAATGTCAGCCATAATTGGCTT i papAnu2.chr6 C 0 C 0 s chlSab2.chr4 46918950 278 + 91010382 tctgttgcacagcgaacaagtgggagtggagctggtggcttcccaattagtctaggattgagcaattgctgcaattgctgctctctgc-agcttcagcattacttcttactggtggtgacagtggtttcctccctggatgagttctgcagcatggtttggggcacatttcctgactgcctagctttga-tctggctttctagccttctcaacagt--tctacaagctcc--ccactatttctgtgataaacctatttattgttaatgtcagccataattggctt i chlSab2.chr4 C 0 C 0 s calJac3.chr2 47275676 280 - 204313951 tctgttgcatagcgaacaagtgggaggggtgatggtggcttagcagttagcctaggattgagcaactgctgcaattgctgctatctgc-agcttcagcgttacttcttactggtggtgacagtggtttcctccctggatgagttctacagcatggcttgggtcacatttcctgactgcctaacttcga-tctggctttctagtcttcttaacagt--tctacaagctccctccactatttctgtgataaacctatttattgttaacgtcagtcaaaactggctt i calJac3.chr2 C 0 C 0 s canFam3.chr4 23980367 270 - 88276631 tctgctgtagagcgcac-agtgggagcggta-gagtggttaaacaggtggcctgggattgagcaacaggtacaattg-tgacgtctgcaaactgcagcattaattctcagaggtggtgccaatag----aactctggacaagttctgtagcatggtttggggcatatatcatggctgtttagctttgagtctggttgtccagcctt-tcaataat--accacaaattcc--ccaatatctc--tgataaacttatttactgttgaagtcagaaatggtAGGCAA i canFam3.chr4 I 137 C 0 a score=8676.000000 s hg38.chr1_KI270765v1_alt 106220 3 + 185285 ctg s panTro4.chr5 117727891 3 - 182651097 ctg i panTro4.chr5 C 0 C 0 s nomLeu3.chr12 54720635 3 + 109391073 ctg i nomLeu3.chr12 C 0 C 0 s rheMac3.chr6 48578181 3 + 180491593 ctg i rheMac3.chr6 C 0 C 0 s macFas5.chr6 49901041 3 + 181584905 ctg i macFas5.chr6 C 0 C 0 s papAnu2.chr6 46572648 3 + 174439528 CTG i papAnu2.chr6 C 0 C 0 s chlSab2.chr4 46919228 3 + 91010382 ctg i chlSab2.chr4 C 0 C 0 s calJac3.chr2 47275956 3 - 204313951 ctg i calJac3.chr2 C 0 C 0 s canFam3.chr4 23980637 3 - 88276631 CTC i canFam3.chr4 C 0 C 0 e ponAbe2.chr5 48802101 9 + 183952662 I a score=584779.000000 s hg38.chr1_KI270765v1_alt 106223 167 + 185285 tggtttATATTTTTT-AAAATTCCAAGATATACCAATGTAACAGATAGCTCAACAAACATATGTCTTTTTAAATTAAGATATATTCTGTGTCACATGAAGTACAATGGACAAAATGCAACAAATTGAATTGAGCTAAAGACCAAATATATATTAAGCCTGGCTGGTCT s panTro4.chr5 117727894 168 - 182651097 tggtttATATTTTTTTAAAATTCCAAGATATACAAATGTAACAGATAGCTCAACAAACATATGTCTTTTTAAATTAAGATATATTCTGTGTCACATGAAGTACAATGGACAAAATTCAACAAATTGAATTGTGCTAAAGACCAAAGATATATTAAGCCTGGCTAGTCT i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48802110 167 + 183952662 taatttatatttttt-aaaattCCAAGATATACAAATGTAACAGATAGCTCAACAAACATATGTCTTTTTAAATTAAGATATATTCTGTGTCACATGAAGTACAATGGACAAAATTCAACAAGTTGAATTGAGCTAAAGACCAAAGATATATTAAGCCTGGCTAGTCT i ponAbe2.chr5 I 9 C 0 s nomLeu3.chr12 54720638 167 + 109391073 tggtttATATTTTTT-AAAATTCCAAGACATACAAATGTAACAGATAGCTCAACAAACATATGTCTTTTTAAATTAAGATATATTCTGTGTCACATGAAGTACAATGGACAAAATGCAACAAATTGAATTGAGCTAAAGACCAAAGATATATTAAGCCTGGCTGGTCT i nomLeu3.chr12 C 0 C 0 s rheMac3.chr6 48578184 166 + 180491593 tggtttATATTCTT--AAAATTTCGAGATATACAAACGTAACAGATAGCTCAACAAACATATGTCTTTTTAAATTAAGATATATTCTGTGTCACATGAAGTACAATGGACAAAATTCAACAAATTGAATTGAGCTAAAGAACAAAGATATATTAAGCCTGGCTGGTCT i rheMac3.chr6 C 0 C 0 s macFas5.chr6 49901044 166 + 181584905 tggtttATATTCTT--AAAATTTCGAGATATACAAACGTAACAGATAGCTCAACAAACATGTGTCTTTTTAAATTAAGATATATTCTGTGTCACATGAAGTACAATGGACAAAATTCAACAAATTGAATTGAGCTAAAGAACAAAGATATATTAAGCCTGGCTGGTCT i macFas5.chr6 C 0 C 0 s papAnu2.chr6 46572651 166 + 174439528 TGgtttatattctt--aaaatttcGAGATATACAAACGTAACAGATAGCTCAACAAacatatgtctttttaaattaagatatattcTGTGTCACATGAAGTATAatggacaaaattcaacaaattgAATTGAGCTAAAGAACAAAGATATATTAAGCCTGGCTGGTCT i papAnu2.chr6 C 0 C 0 s chlSab2.chr4 46919231 166 + 91010382 tggtttATATTCTT--AAAATTTCGAGATATACAAACGTAACAGATAGCTCAACAAACATATGTCTTTTTAAATTAAGATATATTCTGTGTCACATGAAGTACAATGGACAAAATTCAACAAATTGAATTGAGCTAAAGACCAAAGATACATTAAGCCTGGCTGGTCT i chlSab2.chr4 C 0 C 0 s calJac3.chr2 47275959 166 - 204313951 tggtttATATTTTT--AAATACTTAAGATATACAAATGTAACAGATAGCTCAACAAACTTATGTCTTTTCAAATTAAGATACCTTCTGTTTCACAAAAAGTGCAATGGACAAAATTCAACAAATTGAATTGAGCGGAAGACCAAAGATATATTAAGCCTGGCTGGTCT i calJac3.chr2 C 0 C 0 s canFam3.chr4 23980640 161 - 88276631 TGGTTTATATTTTT--AAAAGTCCAAATTATACAAATATAACAGAT-GCTCAGCAAACGTTTTTCTTTTTAAGTTAAAATACACTCTATGTCACAGAAGGTAGAATGAACAAAAGTCAACAAGTTGAACTGAG--AAAGA--AAAGATATCTTAAGCCTGGTTGGTCT i canFam3.chr4 C 0 C 0 a score=947116.000000 s hg38.chr1_KI270765v1_alt 106390 327 + 185285 TAAAAATGTAACTGGATACAgccaggcatggtggctcacgcctataatcccagcactttgggatcctgaggtgggcagatcacctgaagtcaggagtttgagaccagcctggccagcatggtgaaaccccatctctactaaaaatgcaaaaattagctgggtgtggtggtatgcccctgtaatcccagctactcgggaggttgaggcaggagaatcacttgaacctgggaggcagaggttgcagtgagcccagatcatgccaatgcactccagctttggcaacagagtgagactttgtttcaaaat-aaaaaaataaaaataaaaaaa s panTro4.chr5 117728062 320 - 182651097 TAAAAATGTAACTGGATACAgccaggcatggtggctcatgcctataatcccagcactttgggatcctgaggcgggcagatcacctgaagtcaggagtttgagaccagcctggccagcatggtgaaaccccatctctactaaaaatacaaaaattagctgggcgtggtggtatgcccctgtaatcccagctactcaggaggctgaggcaggagaataacttgaacctgggaggcagaggttgcagtgagccgagatcacaccaatgcactccagccttggcaacagagggagaatttgtttcaaaat-aaaaaaataaaaaT------- i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48802277 326 + 183952662 TAAAAATGTAACTGGATACagccaggcatggtggctcacgcctataatcccagcactttgggatcctgaggggggcagatcacct-aagtcaggagtttgagaccagcctggccagcatggtgaaaccccatctctactaaaaatacaaaaattagctgggcgtggtggtatgcccctgtaatcccagctactcgggaggctgaggcaggagaatcacttgaacctgggaggcagatgttgcagtgagccgagatcatgccaatgcactccagccttggcaacagagggagaatttgtttcaaaat-aaaaaaatacaaataaaaaaa i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54720805 327 + 109391073 TAAAAATGTAACTGGATACAgccaggcatggtggctcacgcctataatcccagcactttgggatcctgaggtgggcagatcacctgaagtcaggagtttgagaccagcctggccagcatggtgaaaccccatctctactaaaaatacaaaaattagctggatgtggtggtatgcccctgtaatcccagctactcgggacgctgaggcaggagaatcacttgaacctgggaggtagaggttgcagtgagccgagatcaggccaatgcactccagccttggcaacagagcgagactttgtttcaaaataaaaaaaataaaaat-aaaaaa i nomLeu3.chr12 C 0 C 0 s rheMac3.chr6 48578350 327 + 180491593 TAAAAATGTAAGTGGATACAgccgggcatgatggctcacacctataatcccagcactttgggatgctgaggcgggcagatcacctgaagttaggagtttgagaccagcctggccaacatagtgaaaccccatctccaccaaaaatgcaaaaattagctgggcgtggtggtatgcgcctgtaatcccagctactctggaggctaaggtaggagaatcacttgaacccgggaggcagaggttgcagtgagctgagagcatgccactgcactccagccttggcaacagagagagactttgtttcaaaaa-ataaaaacaaaaataaaaaaa i rheMac3.chr6 C 0 C 0 s macFas5.chr6 49901210 327 + 181584905 TAAAAATGTAAGTGGATACAgccgggcatgatggctcacacctataatcccagcactttgggatgctgaggcgggcagatcacctgaagttaggagtttgagaccagcctggccaacatagtgaaaccccatctccaccaaaaatacaaaaattagctgggcgtggtggtatgcgcctgtaatcccagctactctggaggctaaggtaggagaatcacttgaacccgggaggcagaggttgcagtgagccgagagcatgccactgcactccagccttggcaacagagagagactttgtttcaaaaa-ataaaaacaaaaataaaaaaa i macFas5.chr6 C 0 C 0 s papAnu2.chr6 46572817 327 + 174439528 TAAAAATGTAACTGGATacagccgggcatgatggctcacacctataatcccagcactttgggatgctgaggtgggcagatcacctgaagttaggagtttgagaccagcctggccaacatagtgaaaccccatctccaccaaaaatacaaaaattagctgggcgtggtggtatgcgcctgtaatcccagctactctggaggctaaggtaggagaatcacttgaacccgggaggcagaggttgcagtgagccgagagcatgccactgcactccagccttggcaacagagcgagactttgtttcaaaaa-ataaaaacaaaaataaaaaaa i papAnu2.chr6 C 0 C 0 s chlSab2.chr4 46919397 327 + 91010382 TCAAAATGTAACTGGATACAgccgggcatgatggctcacacctataatcccagcactttgggatgctgaggcgggcagatcacctgaagttaggagtttgagaccagcctggccaacatggtgaaaccccatctccaccaaaaatacaaaaattagctgggtgtggtggtatgcgcctgtaatcccagctactctggaggctaagataggagaatcacttgaacccgggaggcagaggttgcagtgagccgagagcatgccactgcactccagccttggcaacagagcaagactttgtttcaaaaa-ataaaaacaaaaataaaaaaa i chlSab2.chr4 C 0 C 0 s calJac3.chr2 47276125 314 - 204313951 TAAAAATGTAACTGGATACAgctgggtatggtggctcacatttgtaatcccagtactttgggatgctgaactgggcagatcacctgaagtcaggagttggagaccagcctggccaacatgatgaaaccccatctctactaaaaatacaaaaattagccaaggctggtggtatgcccctgtaatccctgctactctggaggctcaggcaagagaattgctcgaacttgggaggcagagcttgcagtgagctgagatcgcacctctgcactccagccttggtgacagagtgagactttgtctcaaaat---------aaaaaT-----AA i calJac3.chr2 C 0 C 0 e canFam3.chr4 23980801 0 - 88276631 C a score=286859.000000 s hg38.chr1_KI270765v1_alt 106717 85 + 185285 taaaaaCGTAACTGGATAGACCTAAGGATCTTGAATAAGCAGAAAATAATTTAGGTAAAAGCCAAATAATAAACTAACATTCTGA s panTro4.chr5 117728382 78 - 182651097 -------GTAACTGGATAGACCTCAGGTTCTTGAATAAGCAGAAAATAATTTAGGTAAAAACCAAATAATAAACCAACATTCTAA i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48802603 85 + 183952662 taaaAATGTAACTGGATAGACCTCAGGTTCTTGAATAAGCAGAAAATAATTTAGGTAAAAACCAAATAATAAACTAACATTCTAA i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54721132 84 + 109391073 taaaAA-TTAACTGGATAGACCTCAGGTTCTTGAATAAGCAGAAAATAATTTAGGTAAAAACCAAATAATAAACTAACATTCTAA i nomLeu3.chr12 C 0 C 0 s rheMac3.chr6 48578677 85 + 180491593 taaaAATGTAACTGGATAGACCTCAGGTTCTTGAATCAGCAGAAAATAATTTAGGTAAAACCCAAGTAATAAACTAACATTCTAA i rheMac3.chr6 C 0 C 0 s macFas5.chr6 49901537 85 + 181584905 taaaAATGTAACTGGATAGACCTCAGGTTCTTGAATCAGCAGAAAATAATTTAGGTAAAACCCAAGTAATAAACTAACATTCTAA i macFas5.chr6 C 0 C 0 s papAnu2.chr6 46573144 85 + 174439528 taaaaatgtaactggATAGATCTCAGGTTCTTGAATCAGCAGAAAATAATTTAGGTAAAATCCAAGTAATAAACTAACATTCTAA i papAnu2.chr6 C 0 C 0 s chlSab2.chr4 46919724 85 + 91010382 taaaAATGTAACTGGCTAGACCTCAGGTTCTTGAATCAACAGAAAATAATTTAGGTAAAAACCAAGTAATAAACTAACATTCTAA i chlSab2.chr4 C 0 C 0 s calJac3.chr2 47276439 82 - 204313951 TTAAAATGTAACTGACTAGACCTCAGGTTCTTGAATA---AGAAAATAATTTAGGCAAAAACCAAATAATAAACTGACATTCTAG i calJac3.chr2 C 0 C 0 s canFam3.chr4 23980801 85 - 88276631 TGAAAACATAACTGGATAGAACTTAAGCTTTTAAGTAAGTAGAAAATACTTTAGGTAAAATACAAATAATAAATTAACATTCTAA i canFam3.chr4 C 0 I 33 a score=2021561.000000 s hg38.chr1_KI270765v1_alt 106802 693 + 185285 AAGGTTTAGGATTTGGAGGCCCAAATGTCTTAGCTAAAAGTGTTCATTCTAACCTCACAGGAAAATTGAAATATGAAAATATACAGAAAAATCTTAGGCAGTATTTATCAATTTTAAGAAACAACTATTTACAGGTTTTTCAATAGGCATTACATTAAAAACAAAATATATAGTTAATAAATATGAAAACTGTGGATATAATCAACACATTTATTTTACTTCTTGAAGTGTTAACATGTGCTGTCTCAAATATCAACAGTGTACACGTGAGAAAAAACATTTTACATAGATTTTCTGCGACAGAAAACAGCATCTCATTAGACATCCCAAGTTTTTTTCATTTGGAACACACACTCATT-CCCCAGTATACTAGGGGTAATAATAATTTA--GAGTTTAATTACTTTTTACTACTAGAAAACTAATTTTATGTTTGGCACAAATTTCTGAAATGATATTCCACTGCAAAGAATAATACCTATATATGGCCAGAATTACTTTTTTTCTATAACATTAAGATAATACTTGTcagcctgagcaacaaagtgagacctcatctttacaaaaaataaataaattagacgggtgttgtggtgatgagggtctgtagtcccagatactcaagaggctgaggtgggaggatcccttgagcctaggaggtcgcggttgcagtgaactatgattgcaccactgcac s panTro4.chr5 117728460 694 - 182651097 AAGGTTTAGTATTTGGAGGCCCAAATGTCTTAGCTAAAAGTGTTCATTCTAAACTCACAGGAAAAGTGAAATATGAAAATATATAGAAAAATCTTAGGCAGTATTTTTCAATTTTAAGCAACAACTATTTACAGGTTTTTCAATAGGCATTACATTAAAAATGAAATATATAGTTAATAAATATGAAAACTGTGGATATAATCAACACATTTATTTTACTTCTTGAAGTGTTAGCACGTGCTGTCTCAAATATCAACAGTGTACACGTGGGAAAAAATATTTTACATAGATTTTCTGCTACAGAAAACAGCCTCTCATTAGATATCCCAAGTTTTTT-CATTTGGAACACATGCCCATT-CCCCAGTATACTAGGGGTAATAATAATTTATAAAGTTTAATTACTTTTTACTACTAGAAAACTAATTTTATGTTTGGCACAAATTTCTGAAATGACATTCCACTGCAAAGAATAATACCTATATATGGCCAGAATTACTTTTTTTCGGTAACATTAAGATAATACTGGTcagcctgagcaacaaagtgagacctcatctctacaaaaaataaataaattagatgggtgtggtggtgatgagggtctgtagtcccagatactcaagaggctgaggtgggaggattccttgagcctaggaggtcgcagttgcagtgaactatgatcacaccactgccc i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48802688 693 + 183952662 AAGGTTTAGGATTTGGAGGCCCAAATGTCTTAGCTAAAAGTGTTCATTCTAACCTCACAGGAAAAGTGAAATATGAAAATATATAGAAAAATCTTAGGCAGTATTTTTCAATTTTAAGAAACAACTATTTACAGGTTTTTCAATAGGCATTACATTAAAAATGAAATATATAGTTGATAAATATGAAAACTGTGGATATAATCAACACATTTATTTTACTTCTTGAAGTGTTAACACGTGCTGTCTCAAATATCAACAGTGTACACGTGAGAAAAAACATTTTACATAGATTTTCTGCTACAGAAAACAGCCTCTCATTAGACATCCCAAGTTTTTT-CATTTGGAACACACGCCCATT-CCCCAGTATACTAGGGGTAATAATAATTTACAGAGTTTAATTACTTTTTACTACTAGAAAACTAATTTTATGTTTGGCACAAATTTCTGAAATGATATTCCACTGCAAAGAATAATACCTGTATATGGCCAGAATTACTTTTTTTCTGTAACATTAAGATAATACTGGTTGgcctgagcaacaaagtgagacctcaactctataaaaaa-aaataaattagacgggtgtggtggtgatgagggtctgtagtcccagatactcaagaggctgaggtgggaggatcccttgagcctaggaggtcgcggttgcagtgaactatgatcgcaccactgcac i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54721216 694 + 109391073 AAGGTTTAGGATTTGGAGGCCCAAATGTGTTAGCTGAAAGTGTTCATTCTAACCTCACAGGAAAACTGAAATATGAAAAGATACAGAAAAATCTTAGGCAGTATTTTTCAATTTTAAGAAACAACTATTTACAGGTTTTTCAATAGGCATTACATTAAAAATGAAATATTTAGTTAATAAATATGAAAACTGTGGATATAATCAACACATTTATTTTACTTCTTGAAGCGTTAACATGTGCTGTTTCAAATATCAACAGTGTACATGTGAGAAAAAGCATTTTACATAGATTTTCCGCGACAGAAAACAGCATCTCATTAGACATCCCAAGTTTTTT-CATTTGGAACACATGCCCGTT-CCCCAGTATACTAAGGGTAATAATAATTTAAAGAGTTTAATTGCTTTTTACTACTAGAAAACTAATTTTATGTTTGGCACAAATTTCTGAAATGATATTCCACAGCAAAGAATAATACCTATATATGGCCAGAATTACTTTTTTTCTATAACATTAAGATAATACTGGTcagcctgagcaccaaagtgagacctcatctctacaaaaaataaataaattagacaggtgtggtggtgatgagggtctgttgtcccagatactcaagaggctgaggtgggaggatcccttgagcctaggaggtcgtggttgcagtgaactatgaccgcaccactgcac i nomLeu3.chr12 C 0 C 0 s rheMac3.chr6 48578762 693 + 180491593 AAGGTTTAGGATTTGGAGGCCTAAATGTCTTAGCTAAAAGTGTTCATTCTAACCTCACAGGAAAAGTGAAATATGGAAATATATAGGAAAATCTTAGGCAGTATTTTTCAATTTTAAGAAACAACCATTTACA-GTTTTTCAATAGGCATTACATTAAAAAAGAAACATATAATTAATAAATATGAAAACTGTGGATATAATCAACACATTTATTTTACTCCTTGAAGTGTTAATATGTGCTGTCTCAAATATCAATAGTTTACACGTGAGGAATAACATTTTACATAGATTTTCTGCGACAGAAAACAGCATCTCATTAGACATCCCAAGTTTTTC-CATTTGGAACATGTGCTCATT-TCCCAGTATACTAGGGGTAATAATAATTTATAGAGTTTAATTACTTTTTACTACTAGAAAACTAATTTTATGTTTGGCACAAATTTCTGAAATGATATTCCACTGCAAACAATAATACCTACATATGGCCAGAATTACTTTTTTTCTATAACATTAAGATAATACTGGAcagcctgggcaacaaaatgagacctcatctctacaataaataaataaattagacaggtgtggtggtggtgagggtctgtagtcccagatactcaggaggctgaggtggcaggatcccttgagcctagaaggtcacagttgcagtgaactatgatcacaccactTTAC i rheMac3.chr6 C 0 I 29 s macFas5.chr6 49901622 693 + 181584905 AAGGTTTAGGATTTGGAGGCCTAAATGTCTTAGCTAAAAGTGTTCATTCTAACCTCACAGGAAAAGTGAAATATGGAAATATATAGGAAAATCTTAGGCAGTATTTTTCAATTTTAAGAAACAACCATTTACA-GTTTTTCAATAGGCATTACATTAAAAAAGAAACATATAATTAATAAATATGAAAACTGTGGATATAATCAACACATTTATTTTACTCCTTGAAGTGTTAATATGTGCTGTCTCAAATATCAATTGTGTACACGTGAGGAATAACATTTTACATAGATTTTCTGCGACAGAAAACAGCATCTCATTAGACATCCCAAGTTTTTC-CATTTGGAACATGTGCTCATT-TCCCAGTATACTAGGGGTAATAATAATTTATAGAGTTTAATTACTTTTTACTACTAGAAAACTAATTTTATGTTTGGCACAAATTTCTGAAATGATATTCCACTGCAAACAATAATATCCACATATGGCCAGAATTACTTTTTTTCTATAACATTAAGATAATACTGGAcagcctgggcaacaaaatgagacctcatctctacaataaataaataaattagacaggtgtggtggtggtgagggtctgtagtcccagatactcaggaggctgaggtggcaggatcccttgagcctagaaggtcacagttgcagtgaactatgatcgcaccactgccc i macFas5.chr6 C 0 C 0 s papAnu2.chr6 46573229 693 + 174439528 AAGGTTTAGGATTTGGAGGCCTAAATGTCTTAGCTAAAAGTGTTCATTCTAACCTCACAGGAAAAGtgaaatatggaaatatatagaaaaatcttaggcagtatttttcaattttaagaaaCAACCATTTACA-GTTTTTCAATAGgcattacattaaaaaagaaacatataattaataaatatgaaaactgTGTATATAATCAACACATTCATTTTACTCCTTGAAGTGTTAATATGTGCTGTCTCAAATATCAATAGTGTACACGTGAGGAATAACATTTTACATAGATTTTCTGCAACAGAAAACAGCATCTCATTAGACATCCCAAGTTTTTC-CATTTGGAACATGTGCCCATT-TCCCAGTATACTAGGGGTAATAATAATTTATAGAGTTTAATTACTTTTTACTACTAGAAAACTAATTTTATGTTTGGCACAAATTTCTGAAATGATATTCCACTGCAAACAATAATACCTACATATGGCcagaattactttttttctataaCATTAAGATAATACTggacaacctgggcaacaaaatgagacctcatctctacaataaataaataaattagacaggtgtggtggtagtgagggtctgtagtcccagatactcaggaggctgaggtggcaggatcccttgagcctagaaggtcacagttgcagtgaactatgatcgcaccactgccc i papAnu2.chr6 C 0 C 0 s chlSab2.chr4 46919809 693 + 91010382 AAGGTTTAGGATTTGGAGGCCTAAATGTCTTAGCTAAAAGTGTTCATTCTAACCTCACAGGAAAAGTGAAATATGGAAATATATAGAAAAATCTTAGGCAGTATTTTTCAATTTTAAGAAACAACCATTTACA-GTTTTTCAATAGGCATTACATTAAAAAAGAAACATATAATTAATAAATATGAAAACTGTGGATATAATCAACACATTTATTTTACTCCTTGAAGTGTTAATATGTGCTGTCTCAAATATCAACAGTGTACACATGAGAAATAATATTTTACATAGATTTTCTGTGACAGAAAACAGCATCTCATTAGACATCCCAAGTTTTTC-CATTTGGAACACGTGCCCATT-TCCCAGTATACTAGGGGTAATAATAATTTATAGAGTTTAATTACTTTTTACTACTAGAAAACTAATTTTATGTTTGGCACAAATTTCTGAAATGATATTCCACTGCAAACAATAATACCTACATATGGCCAGAATTACTTTTTTTCTATAACATTAAGATAATACTGGAcagcctgggcaacaaaatgagacctcatctctacaataaataaataaattagacaggtgtggtggtggtgagggtctgtagtcccagatactcaggaggctgaggtggcaggatcccttgagcctaggaggtcacagttgcagtgaactatgatcgcaccactgccc i chlSab2.chr4 C 0 C 0 s calJac3.chr2 47276521 650 - 204313951 AAGGTTTAGAATTTGGGGGCCCCAATGTCTTAGCTAAAAGTGTTTTTTCTAATCTCACAAGAAAAATGAAACATGAAAATATATAG-AACATCTTAGACAGTAGTTTTCAATTTTAAGAAACAACTAT----AGGGCTTTCAATAGGGATTACATTAAAAAAGAAATACAGAGATAATAAATATGAAAACTGTGGGTACAGGAAACACATTTATTTTACTTCTTAAAGTGTTAATATGTGCTATCTCAAATAACAACAGTGTACACGTGAGAAAAAACATTTTA----------CTGCAGCAAAAAACAGCATCTCATTAGACATCCCAAGTTATTT-CATTTGGAACACATGCCCATTCCCCCAGTATACTAGGGGTAATACTAATTTATAGAG-----------TTTACTACTAGAAAACTGATTTTATGTTTGGCACAAATTTCTGAAATGATATTCCACTGCAAAGAAC-ATACCTATATATGGTCAGAATTACTTTTTTTCTATAACATTAAGATAATACTggccaagctgggcaacaaagtgagacctcatctctaccaaaaataaataaattagccaggtgtggtgg---tgagggtctgta---------------aagactgaggtgggaggactccttgagtttaggaggtcgaggttgcagtgaactatgatcacaccactgcat i calJac3.chr2 C 0 C 0 e canFam3.chr4 23980886 33 - 88276631 I a score=81039.000000 s hg38.chr1_KI270765v1_alt 107495 32 + 185285 tccagcctgggtaacagagcaagatcctctct s panTro4.chr5 117729154 32 - 182651097 tccagcctgggtaacagagcaagatcctgtct i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48803381 32 + 183952662 tccagcctgggtaacagagcaagatcctgtct i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54721910 32 + 109391073 tccagcctggataacagagcaagatcctgtct i nomLeu3.chr12 C 0 C 0 s macFas5.chr6 49902315 32 + 181584905 tccagcctgggtaacagagcaagatcctgtct i macFas5.chr6 C 0 I 3 s papAnu2.chr6 46573922 32 + 174439528 tccagcctgggtaacagagcaagatcctgtct i papAnu2.chr6 C 0 C 0 s chlSab2.chr4 46920502 32 + 91010382 tccagcctgggtaacagagcaagatcctgtct i chlSab2.chr4 C 0 C 0 s calJac3.chr2 47277171 32 - 204313951 tccagcctgggtaacagagccagaccctgtct i calJac3.chr2 C 0 C 0 e rheMac3.chr6 48579455 29 + 180491593 I e canFam3.chr4 23980886 33 - 88276631 I a score=35602.000000 s hg38.chr1_KI270765v1_alt 107527 21 + 185285 caaaaaaaaaaaaaaaaaaaa s panTro4.chr5 117729186 21 - 182651097 ccaaaaaaaaaaaaaaaaaaa i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48803413 21 + 183952662 caataataataataataataa i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54721942 21 + 109391073 caaaaaaaaaaaaaaaaaaaa i nomLeu3.chr12 C 0 C 0 s rheMac3.chr6 48579484 21 + 180491593 gaagggaagaaaaaaaaaaaa i rheMac3.chr6 I 29 C 0 s macFas5.chr6 49902350 21 + 181584905 aaaaaaaaaaaaaaaaaaaaa i macFas5.chr6 I 3 C 0 s papAnu2.chr6 46573954 20 + 174439528 -caaaaaaaaaaaaaaaaaaa i papAnu2.chr6 C 0 C 0 s chlSab2.chr4 46920534 16 + 91010382 -----ccaaaaaaaaaaaaaa i chlSab2.chr4 C 0 C 0 s calJac3.chr2 47277203 21 - 204313951 caaaaaaaTATAAAAGAGAGA i calJac3.chr2 C 0 I 298 e canFam3.chr4 23980886 33 - 88276631 I a score=-4089.000000 s hg38.chr1_KI270765v1_alt 107548 6 + 185285 aaaaaa------- s panTro4.chr5 117729207 5 - 182651097 aaaaa-------- i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48803434 13 + 183952662 taataataataat i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54721963 2 + 109391073 aa----------- i nomLeu3.chr12 C 0 C 0 s rheMac3.chr6 48579505 6 + 180491593 GAGAGA------- i rheMac3.chr6 C 0 C 0 s macFas5.chr6 49902371 6 + 181584905 GAGAGA------- i macFas5.chr6 C 0 C 0 s papAnu2.chr6 46573974 6 + 174439528 aaaaaa------- i papAnu2.chr6 C 0 C 0 s chlSab2.chr4 46920550 6 + 91010382 aaaaGA------- i chlSab2.chr4 C 0 C 0 e calJac3.chr2 47277224 298 - 204313951 I e canFam3.chr4 23980886 33 - 88276631 I a score=1862692.000000 s hg38.chr1_KI270765v1_alt 107554 651 + 185285 GATAATATTGGTATAATTCAGGGTTTTTGCCTCAATCCCCATGCTTCTTCATTTGACCTTCCCTGACT---CCCTGATGAATTTTAGTTTGAATTTTTGCTATAGTCCAGAAGTTAATTTAAAAGATCTTAA---AATTTCCACCTGCCTAGATATTACTTATTTGTTACACTTTAGTCCATGATTTCTATTGTCATTTACATTACCCCAAAAATATGACCTGCTGAATTTCTGCTGTCATGAATTGACTAACATATTTTGGGCCTAAAACCTTTACATTTAGAATCTTTTTGTTTCGTATTGGAAAATATTGTAAGTCCTCCATTTATTGGTCAAAAGCACTGCCTATTTATTTCCATGCTTAATCAGAGAGACTTTCTAATAGTTATTTAATATTATTTACGTTCATTCACTTGTTGACTATAATGACGTTAGTTGCTATGAT-ATTTTTAGGTCATTAATATAATAAAAA-TATGTCAACTTTTCTCTTCTGATGTGTCTTTGGGTTATTAATTTTTAACTCAGGTATCAA------------------------------GCTTGTAAAATGTTTAATGGCTTATAATAATGTCTAACACATAGTATCCACTGAGTTCTGATAACTCTGGTTTATCAAATTCTCT----------------TTTTTTGTACCATTCTCCAAATGCAATGCTATTTGGTTTT s panTro4.chr5 117729212 655 - 182651097 GATAATATTGGTATAATTCAGGGTTTTTGCCTCAATCCCCATGCTTCTTCATTTGACCCTCCCTGACT---CCCTGATGAATTTTAGTTTGAATTTTTGCTCTAGTCCAGAAGTTAATTTAAAACATCTTAATAAAATTTCCACCTGCCTAGATATTTCTTGTTTGTTACACTTTAGTCCATGATTTCTATTGTCATTTACATTACCCCAAAAATATGACCTGCTGAATTTCTGCTGTCATGAATTGACTAACATATTTTGGGCCTAAAACCTTTACATTTAGAATCTTTTTGTTTGGTATTTGAAAATAATGTATGTCCTCCATTTATTGGTCAAAAGCAGTGCCTATTTATTTCTACGTTTAATCAGAGAGACTTTCTAATAGTTATTTAATATTATTTATGTTCATTCATTTGTTGTATATAATGAGGTTAATTGCTATGAT-ATTTTAATGTCGTTAATATAATAAAAAATATGTCAACTTTTCTCTTCCAATGAGTCTTTGGGTTATTAATTTTTAACTCAGGTATCAA------------------------------GCTTGTAAAATGTTTAATGGCTCATAATAATGTCTAACACATAGTATCCACTGAGTTCTGATAACTCCAGTTTATCAAATTCTCT----------------TTTTTTATACCATTCTCCAAATGCAATGCTATTTGGtttt i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48803447 655 + 183952662 aataataatGGTATAATTCGAGGTTTTTGCCTCAATCCCCATGCTTCTTCATTTGACACTCCCTGACT---CCCTGATGAATTTTAGTTTGAATTTTTGCTGTAGTCCAGAAGTTAATTTAAAACATCTTAATAAAATTTCCACCTGCCTAGATATTTCTTGTTTGTTACACTTTAGTCCATGATTTCTATTGTCACTGACATTACCCCAAAAATATGACCTGCTGAATTTCTGCTGTCATGAATTGACTAACATATTTTGGGCCTAAAACCTTTACATTTAGAATCTTTCTGTTTGGTATTTGAAAATAATGTATGTCCTCCATTTATTGGTCAAAAGCACTGCCTATTTACTTCTACGCTTAATCAGAGAGACTTTCTAATAGTTATTTAATATTATTTATGTTCATTCATTTGTTGTATATAGTGAGGTTAATTGCTATGAT-ATTTTTATGTCATTAATATAATAAAAAATAGGTCAACTTTTCTCTTCCAATGAGTCTTTGGGTTATTAATTTTTAACTCAGGTATCAA------------------------------GCTTGTAAAACGTTTAATGGCTTATAATCATGTCTAACACATAGTATCCACTGAGTTCTGATAACTCCAGTTTATCAAATTATCT----------------TTTTTTATACCATTCTCCAAATGCAATGCTATTTGGtttt i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54721965 653 + 109391073 GATAATATTGGTATAATTCAGGGTTTTTGCCTCAATCCCCATGCTTCTTCATTTGACCCTCCCTGACT---CCCTGATGAATTTTAGTTTGAATTTTTGCTCTAGTCCAGAAGTTAATGTAAAAGATCTTAATAAAATTTCCACCTGCCTAGATATTACTTATTTGTTACACTTTAGTCCATGGTTTCTATTGTCATTTACATTAACCCAAAAATATGACCTGCTGAATTTCTGCTGTCATGAATTGACTAACATATTTTGGGCCTAAAACCTTTACATTTAGAATCTTTTTGTTTGGTATTTGAAAATAATGTATGTCCTCCATTTATTGGTCAAAAGCACTGCCTATTTATTTCTATGCTTAATCAGAGAGACTTTCTAATAGTTATTTAATATTATTTATGTTCATTCATTTGTTGAATATAATAAGGTTAATTGCTATGAT-GTTTTTATGTCATTAATATAATAAAAA-TATGTCAACTTTTCTCTTCCAATGAGTCTTTGGGTTATTAATTTTTAACGTAGGTATCAA------------------------------G-TTGTAAAATGTTTAATGGCTTGTAATAATGTCTAACACACAGTATCCACTGAGTTCTGACAACTCCAGTTTATCAAATTATCT----------------TTTTTTATACCATTCTCCAAATGCAATGCTATTTGGTTTT i nomLeu3.chr12 C 0 C 0 s rheMac3.chr6 48579511 647 + 180491593 GAGAATGTTGGTATAATTTAGGGTTTTTGCCTCAATCCCCCTGCTTCTCCATTTGACCCTTCCTGACT---CCCTGAGGAATTTTAGTTTG-ATTTTTGCTCTAGTCCAGAAGTTAATTTAACAGATCTTAATAAAATTTCCACCTGCCTAGATATTATTTGTTTATTACACTTTAGTCCATGATTTCTATTGTCATTTACATTACCCCAAAAATATGACCTGCTGAATTTCTGCTGTCATGAATTGACTAACATATTTTGGGTCTAAAACCTTTACATTTAGAATCTTTTTGTTTGGTATTTGAAAATAATGTATGTCCTCCATTTATTGGTCAAAAGCACTGCCTAT----TTCTGTGCTTAATCAGAGAGACTTTCTAATAGTTATTTAATATTATTTATGTTCATTCATTTGTTGTATATAATGA-GTTAACTTTTATGAT-ATTTTTATGTCATTAATATAATAAAAAATGTGTCAACTCTTCTCTTCCAATAAGTCTTTGGGTTATTAATTTTTAACTCAGGTATCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--------------------------------NNNNNNACATAGTATCCACTGAGTTCTGATAACTCCAGTTTATCAGATTATCT----------------TTTTTTATACCATTCTCCAAATGCAATGCTATTTGGtttt i rheMac3.chr6 C 0 C 0 s macFas5.chr6 49902377 650 + 181584905 GATAATATTGGTATAATTTAGGGTTTTTGCCTCAATCCCCCTGCTTCTCCATTTGACCCTTCCTGACT---CCCTGAGGAATTTTAGTTTG-ATTTTTGCTCTAGTCCAGAAGTTAATTTAACAGATCTTAATAAAATTTCCACCTGCCTAGATATTATTTGTTTATTACACTTTAGTCCATGATTTCTATTGTCATTTACATTACCCCAAAAATATGACCTGCTGAATTTCTGCTGTCATGAATTGACTAACATATTTTGGGTCTAAAACCTTTACATTTAGAATCTTTTTGTTTGGTATTTGAAAATAATGTATGTCCTCCATTTATTGGTCAAAAGCACTGCCTAT----TTCTGTGCTTAATCAGAGAGACTTTCTAATAGTTATTTAATATTATTTATGTTCATTCATTTGTTGTATATAATGAGGTTAATTTTTATGAT-ATTTTTATGTCATTAATATAATAAAAAATGTGTCAACTCTTCTCTTCCAATAAGTCTTTGGGTTATTAATTTTTAACTCAGGTATCAA------------------------------GCTTGTAAAATGTTTAATGGCTTATAATAGTGTCTAACACATAGTATCCACTGAGTTCTGATAACTCCAGTTTATCAGATTATCT----------------TTTTTTATACCATTCTCCAAATGCAATGCTATTTGGTTTT i macFas5.chr6 C 0 C 0 s papAnu2.chr6 46573980 653 + 174439528 gataatattggtATAATTTAGAGTTTTTGCCTCAATCCCCCTGCTTCTCCATTTGACCCTTCCTGACTGTCCCCTGAGGAATTTTAGTTTGAATTTTTGCTCTAGTCCAGAAGTTAATTTAACAGATCTTAACAAAATTTCCACCTGCCTAGATATTATTTGTTTGTTACACTTTTGTCCATGATTTCTATTGTCATTTACATTACCCCAAAAATATGACCTGCTGAATTTCTGCTGTCATGAATTGACTAACATATTTTGGGCCTAAAACCTTTACATTTAGAatctttatttttggtatttgaaaataatgtatgtCCTCCATTTATTGGTCAAAAGCACTGCCTAT----TTCTGTGCTTAATCAGAGAGACTTTCTAatagttatttaatattatttatgttcattcatttgttgtaTATAATGAGgttaatttttatgat-atttttatgtcattaatataat-aaaaatgtgtcaACTCTTCTCTTCCAATAAGTCTTTGGGTTATTAATTTTTAACTCAGGTATCAA------------------------------GCTTGTAAAATGTTTAATGGCTTATAATAGTGTCTAACACATAGTATCCACTGAGTTCTGATAACTCCAGTTTATcagattatct----------------ttttttatacCATTCTCCAAATGCAATgctatttggtttt i papAnu2.chr6 C 0 C 0 s chlSab2.chr4 46920556 650 + 91010382 GATAATATTGGTATAATTTAAGGTTTTTGCCTCAATCCCCCTGCTTCTCCATTTGACCCTTCCTGACT---CCCTGAGGAATTTTAGTTTGAATTTTTGCTCTAGTCCAGAAGTTAATTTAAAAGATCTTAATAAAATTTCCACCTGCCTAGATATTATTTGTTTGTTACACTTTAGTCCACAATTTCTATTGTCATTTACATTACCCCAAAAATATGACCTGCTGAATTTCTGCTGTCATGAATTGACTAACATATTTTGGGCCTAAAACCTTTACATTTAGAATCTTTTTGTTTGGTATTTGAAAATAATGTATGTCCTCCATTTATTGGTCAAAAGCACTGCCTAT----TTCTGTGCTTAATCAGAGAGACTTTCTAATAGTTATTTAATATTATTTATGTTCATTCATTTGTTGTATATAATGAGGTTAATTTTTATGAT--TTTTTATGTTATTAATATAATAAAAAATGTGTCAACTCTTCTCTTCCAATGAGTCTTTGGGTTATTAATTTTTAACTCAGGTATCAA------------------------------GCTTGTAAAATGTTTAATGGCTTATAATAGTGTCTAACACAGAGTATCCACTGAGTTCTGATAACTCCAGTTTATCAGATTATCT----------------TTTTTTATACCATTCTCCAAACGCAATGCTATTTGGTTTT i chlSab2.chr4 C 0 C 0 s calJac3.chr2 47277522 671 - 204313951 GATAATATTAGTATAATTCAGTATTTTTGCCTCAATCACCACGCTTCTTCATTTGACCCTCCCTGACT---CCCTGATAAATTATAGTTTGAATTTTTCATTTAGTTTAGAAGTTAATTTGAAAGATCTTCATAACATTTCCACTTGTCTAGATATTACTTGTCAGTTACACTTTAGTCCATGATTTCTATTGTCATTTACATTACCCCAAAAATATGACCTGCTGAATTTTTGC-ATCATGAATTGACTAACATATTTTGGGCCTAAAACCTTTACTTTTGGAATCTTTTTCTTTGTTATTTGAAAATAATGTATGTCCTCTGTTTATTGGTCAAAAGCACTGCCTATTTATGTCTATGCTTAATCAGAGAGACTTTCTAATAGTTATTTAATATTATTTATGTTCATTAATTTGTCGCATATAATACAATTAATTTCTTTGACAATTTTTATGTCATTAATATAATAAAACATGTGTCAACTTTTCTCTTCCAACTAGTCTTTCAGTTACTAATTTTAAACTCAGGTATCAA------------------------------GCCTGAAAAATGTTTAATGGCTTATAATAGTGTCTAACACATTGTATACACTGAGTTCAGTTAATTCCAATTTATTAAATTATCTTTTTTTCCAAGTTATCTTTTTTATACCATTCTACAAATGCAATATTATATTGTTTT i calJac3.chr2 I 298 C 0 e canFam3.chr4 23980886 33 - 88276631 I a score=1168108.000000 s hg38.chr1_KI270765v1_alt 108205 352 + 185285 ATTTTTATT--TTTTAAAAATGTGCTGCCTGTTTTGAGTCTCTAAAAGTGTGAAATG-----CTCAGCATTTCCCAAATGTATTTGAACATGGAGTGTTATATTTACTAAAAAGTTAACAAGCAAGTATTCCCCTAAACACTCTAGCAAATACTA---------CTAGTACAGACAAATTATGATGTAACATTATAGTACATTTTAACTTATTAGGTTAATTTTGGTTGCAAACAAT------CAAAATTCAAAATGGCTTGTATA--ATAAAGAGATTTTGAACAATAGTATAGGCTCAAGATAGCTTAATGCAGAAGTTTAATAATGACACAAAATAAATGCTTCTTGTCCTCCCTGTTTCTTCACTCTACCTT s panTro4.chr5 117729867 354 - 182651097 atttttatt--ttttaaaaatGTGCTGCCTGATTTGAGTCTCTAAAAGTGTGAAATG-----TTCAGTATTTTCCAAATGTATTTGAACATGGAGTGTTATATTTACTAAAAAGTTAACAAGCAAGTATTCCCCTAAACACTCTAGCAAATACTA---------CTAGTACAGACAAATTACGATCTAACATTATAGTACATTTTAATTTATTAGGTTAATTTTGGTTGCAAACAATAAAAAGCAAAATTCAAACTGGCTTGTATA--ATA----GATTTTGAACAATAGTATAGGCTCAAGATAGTTTAATGCAGAAGTTCAATAATGACACAAAATAAATGTTTCTTGTCCTCCCTGTTTCTTCACTCTACCTT i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48804102 354 + 183952662 atttttatt--tttttaaaatGTGCTGCCTGTTTTGAGTCTCTAAAAGTGTGAAATG-----CTCAGTATTTTCCAAATGTATTTGAACATGGACTGTTATATTTACTAAAAAGTTAACAAACAAGTATTCCCCTAAACACTCTAGCAAATACTA---------CTAGTACAGATGAATTATTATCTAACATTATAGTACATTTTAATTTATTAGGTTAATTTTGGTTGCAAACAATAAAAAGCAAAATTCAAACTGGCTTGTATA--ATA----GATTTTGAACAATAGTATAGGTTCAAGATAGTTTAATGCAGAAGTTTAATAATGACACAAAATAAATGCTTCTTGTCCTCCCTGTTTCTTCACTCCACCTT i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54722618 356 + 109391073 ATTTTTATT--TTTTAAAAATGTGCTGCCTGTTTTGAGTCTCTAAAAGTGTGAAATG-----CTCAGTATTTTCCAAATGTATTTGAACGTGGAGTGTTATATTTACTAAAAAGTTAACAAGCAAGTATTCCCCTAAACA--CTAGCAAATACTA---------CTAGTACAGACGAATTATGATCTAACATTATAGTACATTTTAATTTATTAGGTTAATTTTGGTCACAAACAACAAAAAGCAAAATTCAAACTGGCTTATATA--ATAAAGAGATTTTGAACAATAGTATAGGCTCAAGATAGTTTAATGCAGAAGTTTAATAATGACCCAAAATAAATGCTTCTTGTACTCCCTGTTTCTTCACTCTACCTT i nomLeu3.chr12 C 0 C 0 s rheMac3.chr6 48580158 358 + 180491593 atttttatt--tttaaaaaatGTGCTGCCTGTTTTGAGTCTCTAAAAGTATGAAATG-----CTCAGTATTTTCCAAATGTATTTGAACATGGCATGTTATATTTATTAGAAAGTTAACAAGCAAATATTCCCCTAAACACTCTAGCAAATACTA---------CTAGTACAGATGAATTATGACTTAACATTATAGTACATTTTAATGTATTAGGTTAATTTTGGTTGCAAACAATAAAAAGCAAAATTCAAACTGGGTCATATA--ATAAAGAGATTTTGAACAATAGTATAGGCTCAAGATAGTTTAATGTAGAAGTTTAATAATGACACAAAATAAATGCTTCTTGTCCCCCCTGTTTCTTCACTCTACTTT i rheMac3.chr6 C 0 C 0 s macFas5.chr6 49903027 358 + 181584905 ATTTTTATT--TTTAAAAAATGTGCTGCCTGTTTTGAGTCTCTAAAAGTATGAAATG-----CTCAGTATTTTCCAAATGTATTTGAACATGGCATGTTATATTTATTAAAAAGTTAACAAGCAAATATTCCCCTAAACACTCTAGCAAATACTA---------CTAGTACAGACGAATTATGGCTTAACATTATAGTACATTTTAATGTATTAGGTTAATTCTGGTTGCAAACAATAAAAAGCAAAATTCAAACTGGGTCATATA--ATAAAGAGATTTTGAACAATAGTATAGGCTCAAGATAGTTTAATGTAGAAGTTTAATAATGACACAAAATAAATGCTTCTTGTCCCCCCTGTTTCTTCACTCTACTTT i macFas5.chr6 C 0 C 0 s papAnu2.chr6 46574633 358 + 174439528 atttttatt--tttaaaaaatgtgctgcCTGTTTTGAGTCTCTAAAAGTATGAAATG-----ctcagtattttccaaatgtatttgaaCATGGCatgttatatttattaaaaagttaacaaGCAAATATTCCCCTAAACACTCTAGCAAATACTA---------CTAGTACAGACGAATTATGACTTAACATTATAGTACATTTTAATGTATTAGGTTAATTTTGGTTgcaaacaataaaaagtaaaattcaaactGGGTCATATA--ATAAAGAGATTTTGAACAATAGTATAGGCTCAAGATAGTTTAATGTAGAAGTTTGATAATGACACAAAATAAATGCTTCTTGTCCCCCCTGTTTCTTCACTCTACTTT i papAnu2.chr6 C 0 C 0 s chlSab2.chr4 46921206 360 + 91010382 ATTTTTATT--TTTAAAAAATGTGCTGCCTGTTTTGAGTCTCTAAAAGTATGAAATG-----CTCAGTATTTTCCAAATGTATTTGAACATGGTATGTTATATTTATTAAAAAGTTAACAAGCAAATATTCCCCTAAACACTCTAGCAAATACTA---------CTAGCACAGACGAATTATGATTTAACATTATAGTACATTTTAATGTATTAGGTTAATTTTGGTTGCAAACAATAAAAAGCAAAATTCAAACTGGGTCATATAATATAAAGAGATTTTGAACAATAGTATAGGTTCAAGATAGTTTAATGTAGAAGTTTAATAATGACACAAAATAAATGCTTCTTTTCCCCCCTGTTTCTTCACTCTACTTT i chlSab2.chr4 C 0 C 0 s calJac3.chr2 47278193 355 - 204313951 ATTTTTATT--TCTTT-AAATGTGCTGCCTGTTGTGAGTCTCTAAAAGTGTGAAATG-----CTCAGTATTTTCCAAATCTATTTGAACATGGAGTGTTACACTTACTAAAAAGTTAACAAGCAAGTATTCCCTTAAACACTCTAGCAAATACTG---------CTAGTACAAACAAATTATGATCTAACATTACAGTACATTTTGATGTAttaggttaattttggttgcaaacaataaaaaggaaaactcaaactggcttatata--atgaagagattttGAATAATAGTATAGACTCGAGATAGTTCAGTGCAGAAGATTACTGATGATACAAAATAAATGCTTCTAGTCCTTCCTGTCCCTCTACCCTA--TT i calJac3.chr2 C 0 C 0 s canFam3.chr4 23980919 335 - 88276631 ACTTTTGTTGCTTGTTAAAATATTTACCATGTTGCAAATCCTTGAAAGTGTGAAATATAATCCTCAGTATTTTCCAAATATATTTGAACATGGACTATTTTATGTACT---AAGCTAGCAAGCAAGTGCTCTGCTAAAC--TCTGGCAAATTCTAGAATAGATTCTAGTAC-------------TTTAACATTTTAGTGC----TTATGTATTCTGATAATTTTGGTCACAAGTAAC-AAAAGCATAATTCAGACTGGCTCATATG--TTAAAGAGAATTTGGATAATAGT----------------TTAATGCAGAGGTTTAGTGATGACACAAAACAAATGCTTCTTATCCTCTCTGTATCTCCACTCTCCCTT i canFam3.chr4 I 33 C 0 a score=1046331.000000 s hg38.chr1_KI270765v1_alt 108557 367 + 185285 AAGtgatatagattgaatgtttgtagtcccccaaaatttgtatgtttaaatctaatccctagtgtgatgatatttggcagtgggtcttc-ggggggtgattaggtcatgaggacagagccctcatgaatgggattagtgcccttataaaagagaccttagagaacttccttgccccttcctccatgtgaggacacagc-aaaaagacagctgtctgtgaaccaggaaacaaatcctcattagaccctgaatctgttgacaccatgatcttggacttcctggcctctagaactgtaagaaataaatttatgttgttcataaaccatccaggctgtgatattctggtatagcgacctgaaaggactaagac s panTro4.chr5 117730221 363 - 182651097 AAGtggtatagattgaatgt----atccccccaaattttgtatatttaaatctaatccctagtgtgatgatatttggcagtgggtcttc-ggggggtgattaggtcatgagggcagagccctcatgaatgggattattgctcttataaaagagaccttagagaacttccttgccccttccaccatgtgaggacacagc-aaaaagacagcggtctatgaaacaggaaacaagtcctcactagaccctgaatctgttgacaccttgatcttggacttcctggcctctagaactgtaagaaataaatttatgttgttcataaaccatccaggctgtgatattctggtatagcaatctgaaaggactaagac i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48804456 363 + 183952662 AGGtggtatagattgaatgt----atcaccccaaaatttgtatatttaaatctaatccctagtgtgatgatatttggcagtgggtcttc-agggggtgattaggtcatgaggacagagccctcatgaatgggattagtgcccttataaaagagaccttagagaacttccttgccccttccaccatgtgaggacacagc-aaaaagacagctgtctatgaaccaggaaacaagtcctcactagaccctgaatctgttgacaccttgatctcagacttcctggcctctagaactgtaagaaataaatttatgttgttcataaaccatccaggctgtgatattctggtatagcaacctgaaaggactaagac i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54722974 366 + 109391073 AAGtggtatagattgaatgtttgtatt-ccccaaaatttgtatgtttaaatctaatccctagtgtggtgatatttggcagtgagtcttcgggggggtgattaggtcatgaagacagagccctcatgaatgggatgactgcccttataaaaaagatcttagagaacttccttgccccttccaccatgtgaggacacagc-aaaaagacagctgtctgtgaaccaggaaacaagtcctcactagaccctgcatctgttgacaccttgatcttggacttcctggcctctagaactgtaagaaataaatttatgttgttcataaaccatccagactgtg-tattctggtatagcaacctgaagggactaagac i nomLeu3.chr12 C 0 C 0 s rheMac3.chr6 48580516 363 + 180491593 AAGtggtatagattgaatgtttgtatgcccccaaaatttgtatgtttaaatctattcgctagtgtaatgatatttggcagtgggtcttc-gggggatgattaggtcatgaggacagagccctcatgaatgggattagtgcccttataaaagagacctcagagaacctccttgccccttccaccatgtgaggacacagc-aaaaagacag----ctatgaaccaggaaaagagtcctcactggaccctgaatctgttgacaccttgatcttggacttcctggcatatagaactgtaagaaataaatttatgttgttcataaaccacccaggctgtgatatttgggtataacaatctgaaaagactaagaA i rheMac3.chr6 C 0 C 0 s macFas5.chr6 49903385 363 + 181584905 AAGtggtatagattgaatgtttgtatccccccaaaatttgtatgtttaaatctattcgctagtgtaatgatatttggcagtgggtcttc-gggggatgattaggtcatgaggacagagccctcatgaatgggattagtgcccttataaaagagacctcagagaacttccttgccccttccaccatgtgaggacacagc-aaaaagacag----ctatgaaccaggaaaagagtcctcactggaccctgaatctgttgacaccttgatcttggacttcctggcatatagaactgtaagaaataaatttatgttgttcataaaccacccaggctgtgatatttgggtataacaatctgaaaagactaagaA i macFas5.chr6 C 0 C 0 s papAnu2.chr6 46574991 363 + 174439528 AAGTGGTATAGATTGAATATTTGTAtccccccaaaatttgtatgtttaaATCTATTCTCTAGTGTGATGATATTTGGCAGTGGGTCTTC-GGgggatgattaggtcatgaagacagagccttcatgaatgggattagtgcccttataaaagagacctcagagaacttccttgccccttccaccatgtgaggacacagc-aaaaagacaG----CTATGAACCAGGAAAAGAGTCCTCACTGGACCCTGAatctgttgacaccttgatcttggacttcctggcatctagaactgtaagaaataaatttatgttgttcatAAACCACCCAGGCTGTGATATTTGGGCATAACAATCTGAAAAGACTAAGAA i papAnu2.chr6 C 0 C 0 s chlSab2.chr4 46921566 359 + 91010382 AAGtggtatagattgaa----tgtatccccccaaaatttgtatgtttaaatctattcgctagtgtgatgatatttggcagtgggtcttc-aggggatgattaggtcatgaggacagagccctcatgaatgggattagtgcccttataaaagagacctcagagaacttccttgccccttccaccatgtgaggacacagc-aaaaagacag----ctatgaaccaggaaaagagtcctcactggaccctgaatctgttgacaccttgatcttggacttcctggcatctagaactgtaagaaataaatttatgttgttcataaaccacccaggctgtgatatttggatataacaatctgaaaagactaagaA i chlSab2.chr4 C 0 C 0 s calJac3.chr2 47278548 363 - 204313951 AAGtggtatagactgaatgtttgtaaccccctaaaatttgtgtgttgaaatctaatccgtagtgtgatgacatttggcagtgggtcttt-ggggggtgattaggtcatgaggacagagccctcatgaatgggattagtaaccttataaaagacacctcagag---ttccttgccccttcaaccatgtgaggacacagcaaaaaagacagct--cactgaaccaggaaacaatccctcaccagacactgaatctgttgacacctttatcttggacttcctaccctctaaaactgtgagaaataaatttatgttgttgataaactacccaggctttgatattctggtatagcatcctgaatggagtaagac i calJac3.chr2 C 0 C 0 e canFam3.chr4 23981254 0 - 88276631 C a score=1239244.000000 s hg38.chr1_KI270765v1_alt 108924 364 + 185285 aTTAGGTCTCAGTTTTATTCTATGGCTTAAAATATCATGTCATGAGTAGACAACTTCCAATCCTAGTACCTCGTGCTTCCTCTGCTGCATTTGG-AAAGAAGGCATTTCCCTCTTCAATCATGGAATGAAAAA---GTTGTACTTCATTCTGATTTGATTAGCAGAAGGCACACGTTCCTTCCATGCACCAATTAAAATG-ACCAAGAATTGGGCATGGGACTCATGTCACTTAAACATTG-TGAAGCTGAGAAATTCATTATTTGGTTAGGAGTGTGTGAGAG---CAGGGAACA----CTGAATGCTTGAGACACCACC-------------ACGATGTCCACTACATGTATTTCCATTTCAGTAAACATTTCCATTAAGATAATGCT s panTro4.chr5 117730584 363 - 182651097 aTTAGGTTTCAGTTTTATTCTATGGCTTAAAATATCATGTTATGAGTAGACAACTTCCAATCCTAGTACCTTGTGCTTCCTCTGCTGCATTTGG-ACAGAAGGCATTTCCCCCTTCAATCGTGGAATGAAAAA---GTTGTACTTCATTCTGATTTGATTAGCAGAAGGCATATGCTCTTTC-ATGCACCAATTACAATG-ACCAAGAATTGGGCATGGGACTCATGTCACTTAAACATTG-TGAAGCTGAGAAATTCATTATTTGGTTAGGAGTGTGTGAGAT---CAGGGAACA----CTGAATGCTTGAGGTACCACC-------------ACGATGTCCACTACAGGTATTTCCATTTCAGTAAACATTTCCATTAAGATAATGCT i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48804819 363 + 183952662 aTTAGGTCTCAGTTTTATTCTATGGTTTAAAATATCATGTCATGAGTAGACAACTTCCAATCCTAGTACCTCATGCTTCCTCTGCTGCATTTGG-AAAGAAGGCATTTCCCCCTTCAATCATGGAATGAAAAA---GTTCTACTTCATTCTGATTTGATTAGCAGAAGGCATATACTCCTTC-ATGCACCAATTACAATG-ACCAAGAATTGGGCATGGGACTCATGTCACTTAAACATTG-TGAAGCTGAGAAATTCATTATTTGGTTAGGAGTGTGTGAGAG---CAGGGAACA----CTGAATGCTTGAGATACCACC-------------ACGATGTCCACTACATGTATTTCCATTTCAGTAAACATTTCCATTAAGATAATGCA i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54723340 363 + 109391073 aGTAGGTCTCAGTTTTATTCCATGGCTTAAAATATCATGTCATGAGTAGACAGCTTCCAATCCTAGTACCTCATGCTTCCTCTGCTGCATTTGG-AAAGAAGGCATTTCCCCCTTCAATCATGGAATGAAAAA---GTTGTACTTCATTCTTATTTGATTAGCAGAAGGCATATGCTCCTTC-ATGCACCAATTACAATG-ACCAAGAATTGGGCATGGGACTCATGTCACTTAAACATTG-TGAAGCTGAGAAATTCATTATTTGGTTAGGAGTGTGTGAGAG---CAGGGAACA----CTGAATGCTTGAGATACCACT-------------ACGATGTTCACTACATGTATTTCCATTTCAGTAAACATTTCCATTAAGATAATGCT i nomLeu3.chr12 C 0 C 0 s rheMac3.chr6 48580879 364 + 180491593 ATTAGGTCTCAGTTTTATTCTATGGCTTGAAATATCATGTCATGAGTAGACAACTTCCACTCCTAGTACCTCGTGTTTCCTCTGCTGCATTTGGGAAAAAAAGCATTTCCCTCTTCAATCATGGAATGAAAAA---GTTGTACTTCATTCTGATTTGATTAGCAGAAGGCACATGCTCCTTC-ATGCACCAATTACAATG-ACCAAGAATTGGGCATGGGACTCATGTCACTTAAACATTG-TGAAGCTGAGAAATTCATTGTTTGATTAGGTGTGTGTGAGAG---CAGGGAACA----CTGAATGCTTGAGATACCACT-------------ACGATGTCCACTACATGTATTTCCATTTCAGTAAACATTTCCATTAAGATAATGCT i rheMac3.chr6 C 0 C 0 s macFas5.chr6 49903748 364 + 181584905 ATTAGGTCTCAGTTTTATTCTATGGCTTGAAATATCATGTCATGAGTAGACAACTTCCACTCCTAGTACCTCGTGTTTCCTCTGCTGCATTTGGGAAAAAAAGCATTTGCCTCTTCAATCATGGAATGAAAAA---GTTGTACTTCATTCTGATTTGATTAGCAGAAGGCACATGCTCCTTC-ATGCACCAATTACAATG-ACCAAGAATTGGGCATGGGACTCATGTCACTTAAACATTG-TGAAGCTGAGAAATTCATTGTTTGATTAGGTGTGTGTGAGAG---CAGGGAACA----CTGAATGCTTGAGATACCACT-------------ACGATGTCCACTACATGTATTTCCATTTCAGTAAACATTTCCATTAAGATAATGCT i macFas5.chr6 C 0 C 0 s papAnu2.chr6 46575354 364 + 174439528 ATTAGGTCTCAGTTTTATTCTATGGCTTGAAATATCATGTCATGAGTAGACAACTTCCAATCCTAGTACCTCGTGTTTCCTCTGCTGCATTTGGGAAGAAAAGCATTTCCCTCTTCAATCATGGAATGAAAAA---GTTGTACTTCATTCTGATTTGATTAGCAGAAGGCACATGCTCCTTC-ATGCACCAATTACAATG-ACCAAGAATTGGGCATGGGACTCATGTCACTTAAACATTG-TGAAGCTGAGAAATTCATTGTTTGATTAGGTGTGTGTGAGAG---CAGGGAACA----CTGAATGCTTGAGATACCACC-------------ACGATGTCCACTACATGTATTTCCATTTCAGTAAACATTTCCATTAAGATAATGAT i papAnu2.chr6 C 0 C 0 s chlSab2.chr4 46921925 364 + 91010382 ATTAGGTCTCAGTTTTATTCTATGGCTTGAAATATCATGTCATGAGTAGACAACTTCCAATCCTAGTACCTCGTGTTTCCTCTGCTGCATTTGGAAAAAAAAGCATTTCCCTCTTCAATCATGGAATGAAAAA---GTTGTACTTCATTCTGATATGATTAGCAGAAGGCACATGCTCCTTC-ATGCACCAGTTACAATG-ACCAAGAATTGGGCATGGGACTCATGTCACTTAAACATTG-TAAAGCTGAGAAATTCATTGTTTGATTAGGAGTGTGTGAGAG---CAGGGAACA----TTGAATGCTTGAGATACCACC-------------ACGATGTCCACTACATGTATTTCCATTTCAGTAAACATTTCCATTAAGATAATGCT i chlSab2.chr4 C 0 C 0 s calJac3.chr2 47278911 362 - 204313951 aTTA-GTCTCAGTTTTATTCTATGGGTTAAAATATCATGTCGTGACTAGAAAACTTCCAATCCTAGTACCTCGTGCTTCCTCTGCTGCATTTGG-AAAGAAGGAATTTTCTCCTTCAATCATGGAATGAAAAA---GTTGTATTTCATTCTGATTTGATTAGTAGAAGGCATATGCTAATTT-ATGCGCCAATTACAATG-ACCAAGAATTGGGCACAAAACTCATGTCACTTAAACATTG-TGAGGCTGAGAAATTCATAGTTTGGTTTGGAGTGTGTGAGAG---CAGGGAACA----CTGAATGCTTGAGATACCACC-------------ACAATGTCCCCTACATGTATTTCCATTTCAGTAAACATTTCCATTAAGATAATGCT i calJac3.chr2 C 0 C 0 s canFam3.chr4 23981254 374 - 88276631 ATCAGGTTTCTGTTTTATTTTAACGATTGAAATTCCATGTCATCACCAGATAAC------------TACTTAACACTTCCTCTGCTATGCTTAG-AGAGAAGCTATTTCCCCC-TCAATCACTGAATGAAAAAAACATTGTGCTCTTTTCTGATTTGATTAACTGAAGGCTCATGCTCCTTC-TTGCAGCAATAGTCCTGTGCCAAGAATTCAACATGGGTATCATCCCAGTCAAACTTTGCTGTGGATGGGCAATTACTTTTCTGGCTAGGAGTGTGTGTGGGGGAAAGGGGGCAGATGTTGAATGCACG-GAGGCCACTACATACATTTCCAACAATGCCCACCACATGGATTTCTATTTCAGTAAACTTTGCCATTAAGATATTGCT i canFam3.chr4 C 0 I 205 a score=1149350.000000 s hg38.chr1_KI270765v1_alt 109288 355 + 185285 AGAACAAAATCAGAGGAGTAGATCTTGGTGTCCCCAACTTTTGTTGACCTAACAAAGTGAAGTTGCTT-CAACTGGACACTTCTGAACCACATTTATGCCTATATGT-----TCAGTTCAAATTTATTATAAGCAATTTTCAGGTCCATATGTTTAGGATATTTCATTTGTTT----------------------GGTTATGCATTATATGTATAC------------------ATGTTTTTAA--------------------CATACATACGCCTCTACATATATTTTGGAGGCCTTTACACAAAAGTGTTTTCCCTGAAGGGAGAAGAGAAAAGTTGAATGCAGAAGTA-GAAAAAAAAAA-------TTCATTTGCACTTGTAGTAGTTATATCTAAATATTTTATATTACAGATGTATTAAAAT------------------------------------------------------------------------- s panTro4.chr5 117730947 359 - 182651097 AGAACAAAATCAGAGGAGTAGATCTTGGTGTCCCCAACTTTTGTTGACCTAACAAAGTGAAGTTGCTT-CAACTGGACACTTCTGAACCACATTTATGCCCATATGT-----TCAGTCCAAATTTATTATAAGCAATTTTCAGGTCCATATGTTTAGGATATTTCATTTGTTT----------------------GGTTATGCATTATATGTATAC------------------AT-TTTTTAA--------------------CATACACACACCTCTACATATATTTTGCAGGCCTTTACACAAAAGTGTTTTCCCTAAAGGGAGAAGAGAAAAGTTGAATGCAGAAGTA-AAAAAAAAAAAA--AAAATTCATTTGCATTTGTAGTATTTGTATCTAAATATTTTATATTACAGATGTATTAAGAT------------------------------------------------------------------------- i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48805182 357 + 183952662 AGAACAAAATCAGAGGAGTAGATCTTGGTGTCCCCAACTTTTGCTGACCTAACAAAGTGAAGTTGCTT-CAACTGGACACTTCCGAACCACATTTATGCCCATATGT-----TCGGTCCAAATTTATTATAAGCAATTTTCAGGTCCATATGTTTAGGATATTTCATTTGTTT----------------------GGTTATGCATTATATGTATAT------------------ATGTTTTTAA--------------------CATACACACACCTCTACATATATTTTGGAGGCCTTTACGCAAAAGTGTTTTCCCTAAAGGGAGAAGAGAAAAGTTGAATGCAGAAGTA-AAAAAAAAAAA-----AAATCATTTGCATTTGTAGTATTTGTATCtaaatattttatattacagatgtattaatat------------------------------------------------------------------------- i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54723703 353 + 109391073 AGAACAAAATCAGAGGAATAGATCTTGGTGTCCCCAACTTTTGTTGATCTAACAAAGTGAAGTTGCTT-CAACTGGACACTTCTGAGCCACATTTATGCCTGTATGT-----TCAGTCCAAATTTATTATAAGGAATTTTCAGGTCCATATATTTAGGATATTTCATTTGTTT----------------------GGTTATGCATTATATGTATAC------------------ATGTTTTTAA--------------------CATACACACACGTCTACATATATTTTGGAGGCCTTTACACAAAAGTGTTTTCCCTAAAAGGAGAAGAGAAAAGTTGTATGCAGAAGTA-GAAAAAAAA---------TTCATTTGCATTTATAGTATTTGTATCTAAATATTTTATATTACAGATGTATTAATAT------------------------------------------------------------------------- i nomLeu3.chr12 C 0 C 0 s rheMac3.chr6 48581243 350 + 180491593 AGAACAAAATCAGAGGAGTAGATCTTAGTGTCCCCAACTTTTGTTGACCTAACAAAGTGAAGTTGCTT-CAACTGGACAGTTCTGAACCACATTTATGCCTATATGT-----TCAGTCCAAATTTA--ATAAGCAATTTTCAGGTCCATATGTTTAGGATATTTCATTTGTTT----------------------GGTTATGCATTATATGTATAC------------------ATGTTTTTAA--------------------CATACACACACCTCTACATATATTTTGGAGGCCTTTACACAAAAGTGTTTTCCCTAAAGGGAGAAGAGAAAAGATGGATGCAGAAGTG----AAAAAAAA-------ATCATTTGCATTTGTATTATTTGTATCTAAATATTTCATATTACAGATGtattaatat------------------------------------------------------------------------- i rheMac3.chr6 C 0 C 0 s macFas5.chr6 49904112 351 + 181584905 AGAACAAAATCAGAGGAGTAGATCTTAGTGTCCCCAACTTTTGTTGACCTAACAAAGTGAAGTTGCTT-CAACTGGACAGTTCTGAACCACATTTATGCCTATATGT-----TCAGTCCAAATTTA--ATAAGCAATTTTCAGGTCCATATGTTTAGGATATTTCATTTGTTT----------------------GGTTATGCATTATATGTATAC------------------ATGTTTTTAA--------------------CATACACACACCTCTACATATATTTTGGAGGCCTTTACACAAAAGTGTTTTCCCTAAAGGGAGAAGAGAAAAGATGGATGCAGAAGTG---AAAAAAAAA-------ATCATTTGCATTTGTAGTATTTGTATCTAAATATTTCATATTACAGATGTATTAATAT------------------------------------------------------------------------- i macFas5.chr6 C 0 C 0 s papAnu2.chr6 46575718 354 + 174439528 AGAACAAAATCAGAGGAGTAGATCTTAGTGTCCCCAACTTTTGTTGACCTAACAAAGTGAAGTTGCTT-CAACTGGACAGTTCTGAACCACATTTATGCCTATATGT-----TCAGTCCAAATTTA--ATAAGCAATTTTCAGGTCCATATGtttaggatatttcatttgttt----------------------ggttatgcattatatgtatac------------------atgtttttaa--------------------CAGACACATACCTCTACATATATTTTGGAGGCCTTTACACAAAAGTGTTTTCCctaaagggagaagagaaaagatggatgcagaagtgaaaaaaaaaaaa-------atcatttgcatttGTAGTATTtgtatctaaatattttatattacagatgtattaatat------------------------------------------------------------------------- i papAnu2.chr6 C 0 C 0 s chlSab2.chr4 46922289 353 + 91010382 AGAACGAAATCAGAGGAGTAGATCTTAGTGTCCCCAACTTTTGTTGACCTAACAAAGTGAAGTTGCTT-CAACTGGACAGTTCTGAACCACATTTATGCTTATATGT-----TCAGTCCAAATTTA--ATAAGCAATTTTCAGGTCCATATGTTTAGGATATTTCATTTGTTT----------------------GGTTATGCATTATATGTATAC------------------ATGTTTTTAA--------------------CATACACACACCTCTACATATATTTTGGAGGCCTTTACACGAAAGTGTTTTCCCTAAAGGGAGAAGAGAAAAGATGGATGCAGAAGTG-AAAAAAAAAAA-------ATCatttgcatttgtagtatttgtatctaaatattttatattacagatgtattaatat------------------------------------------------------------------------- i chlSab2.chr4 C 0 C 0 s calJac3.chr2 47279273 373 - 204313951 AGAACAAAATCAGAGGAGTAGATCCTGGTGTCCTCAACTTTTGTTGACTTAACAAAATGAGGTTGCTT-CAACCAGACAGTTCTGAACCACACTCATGCCTATATGT-----TTAGTCCAAATTTCTTATAAGCAATTTTCAGGTCCATATGTTTAAGATATTTCATTTGTTT----------------------GGTTATGCATTACatatatacacatatacatatatgtgtatatatgtaa--------------------tatacacatacctctacatatacTTTGGATGCTTTTACACGAAAGTGTTTTCCCTAAAGGGAGAAAAGAAAAGATAAATGTGGAAGTA-AAAAATAAAAA-------TTCATTTGCATTTGTAGTAGCTGTATCTAAATATTTTACAGTACAGATGTATTAATAC------------------------------------------------------------------------- i calJac3.chr2 C 0 C 0 s canFam3.chr4 23981833 479 - 88276631 CGAGAGAAATCAGAGGAGCAGAGCCTGGAGCCCCCAACTTTTGTTGACCTCACAAAATGAGATTGCTTCCAATTGGATCCTTTTGGATCGCACATGTGCCTTTAGGTCTCAGTCAGTCCAAATTTACATTAAATAATTTTCAAACCCTTTTGTTTAGCACATTCCATTTGTTTCTCtatacatgtgtaaattgtatattatatataagatatatat------------------atttatttaacaaatgcatgcacacatatgcacatataCGTTCTTACATGTAGTTTGGAGGTCTTCACATTAACTTGTTTTCTTTAAAGAGTGAGGAGAAAAGATGGGTATAAGAGTT-GAAAAGAAACACTTTTACTTTATTTACACTTGTAGCATATGCATCTAAATATTTTACATT----ATGTATTAATATTTTCATAAGTTTATTCATTTTTTTCACAATTTTATGCACTTGTTTATTTATTTACTTacttacagattaaaac i canFam3.chr4 I 205 I 232 a score=3881312.000000 s hg38.chr1_KI270765v1_alt 109643 1119 + 185285 TTTTATAATTTTAAACACTACTTTAAAACAGGGAGATGGTTTACCTTCAAAAAATTTGGCTCTCAACTCAAAGTTATCAAAGTATATCCTAGATGTAGTTTGCTTGTCAGGCTTCTACATGAAAATCTAAAATGCTCCTGCATTTCAGAATGAGCCTAACATATGTAATTGCACTCATCCACTATGTCTAC--ATTGCCAACCAAATACTGACAGAGAGAGCTA--GAGTGCCACAGAGAGCTGGCAGTTCCTCTGTTTGCATTAGCTTCTACTTGCTTCTTCATCTTTCCTCTATGTCTGACACATTTCATGTTACTGTTTTTAAATGTTCCCTTAGCTACAGAGCTAATGTGCTTATATCTGTAAGGGGTCTCATGTGAACCTCTAAATAATTAAAGATTCATTAGCTCCCTGGAGGGCCACCATGATTTCCAAAACAAGTCACAATACCTAAAGATCTAATTGTACAATTTCCCTCAGAAATAGCC-----TTGAGAAAGAAGTCACATCACTCAGCAATGAGTATTATAATTACTCACAGCAGTTTTCATGGTACTATATAACATCCAATTTACAGAATTAAAGGTAATGTAATTCAAAAGAAAAATAGCTGGTTTTAAGGAATGAAGGGCCATGTCAACTATTGGAAGCATCTTTGAACTGGAGCCTC-------TATGTTCGGGTTTCACCAGGTTTATGTTTTTAATTAATATCCGATTCAGCTTCCTGTAATTTCCATTGAGGTTTTCTAGAACAAGACAAGTCAGAAATTGATCTTTAATTATAAGCTAAG-AGCAAACTGCCAAAGAACTGAGAGAAATTTTGAAGAAACAGGTCTATCAGGACTAACCATTTTAAGATAATAAAGACTAATCAGACACACACACATATGCACAAAAAGAGGGAGAGAGAGAACAAAAATCCTATGAAATACATTTTAAAAAC-----TTAA-TTTTTTTAAGAAGAAGCATTTGATCTGCCAAAGAGAAGAGTTAGCAGTTTGGAGATCTGACATTGCTAATC-------------TCAGGGCAAGAAAATAACAAAATAAGACACCAAAGAATTACCTAAACTGTGGAAGATGAAGCTTTCAGAGTTCTCACAGAGAAATGGGATACTAAAGTACCAAGTTTA s panTro4.chr5 117731306 1121 - 182651097 TTTTATCATTTTAAACACTACTTTAAAACAGGGAGATGGTTTACCTTCAAAAAATTTGGCTTTCAACTCAAAGTTATCAAAGTATATCCTAGATGTAGTTTGCTTGTCAGGCTTCTACATGAAAATTTAAAAGGCTCCTGCATTTCAGAATGAGCCTAACATATGTAATTGCACTCATCCACTATGTCTAC--ATTGCCAACCAAATACTGACAGAGAGAGCTATAGAGTGCCATAGAGAGCTGGCAGCTCTTCTGTTTGCATTAGCTTCTACTTGCTTCTTCATCTTTCCTCTATGTCTGACACATTTCATGTTACTGTTTTTAAATGTTCCCTTAACTACAGAGCTAATGTGCTTATATCTGTCAGGGGTCTCATGTGAACCTCTAAATAATTAAAGATTCATCAGCTCCCTGGAGGGCCACCATGATTTCCAAAACAAGTCACAATACCTAAAGATCTAATTGTACAATTTCCCTCAGAAATAGCC-----TTGAGGAAGAAGTCACATCACTCAGCAATGAGTATTACAATTATTCACAGCAGTTTTCATGGTACTATATAACATCCAATTTACAGAATTAAAGGTAATGTAATTCGAAAGAAAAATACCTGGTTTTAAGGAATGAATGGCCATGTCAACTATTGGAAGCATCTTTGAATTGGAGCCTC-------TATGTTCAGGTTTCACCAGGTTTATGTTTTTAATTAATATCCTATTCAGCTTTCTGTAATTTCCACTGAGGTTTTCTAGAACAAGACAAGTCAGAAATTGATCTTTAATTATAAGCTAAG-AGCAAACTGCCAAAGAACTGAGAGAAATTTTGAAGAAAGAGGTCTATCAGGACTAACTATTTTAAGAGAATAAAGACTAATCAGACACACACACATATGCACAAAAAGAGGGAGAGAGAGCACAAAAATCCTACGAAATACattttaaaaaa-----ttaa-tttttttaaGAAGAAGCATTTGATCTGCCAAAGGGAAGACTTAGCAGTTTGGAGATCTGACAGTGCTAATC-------------TCAGGGCAAGAAAATAACAAAATAAGACACCAAAGAATTACCTAAACTGTGAAAGATGAAGTTTTCAGAGTTCTCACAGAGAATTGGGATACTAAAGTACAAAGTTTA i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48805539 1135 + 183952662 ttttataattttaaaCACTACTTTAAAACAGGAAGATGGTTTACCTTCAAAAAATTTGGCTCTCAACTCAAAGTTATCAAAGTATATCCTAGATGTAGTTTGCTTGTCAGGCTTCTACATGAAAATTTAAAAGGCTCCTGCATTTCAGAATAATCCTAACATATGTAATTGCACTCATCCACTATGTCTAC--ATTGCCAACCAAATACTGACAGAGAGAGCTATAGAGTGCCATAGAGAGCTGGCAGCTCTTCTGTTTGCATTAGCTTCTACTTGCTTCTTCATCTTTCCTCTATGTCTGACACATTTCATGTTACTGTTTTTAAATGTTCCCTTAACTACAGAGCTAATGTGCTTGTATCTGTCAGGGGTCTCATGTGAACCTCTAAATAATTAAAGATTCATTAGCTCCCTGGAGGGCCACCATGATTTCCAAAACAAGTCACAATACCTAAAGATCTCATTGTACAATTTCCCTCAGAAATAGCC-----TTGAGGAAGAAGTCACATCACTCAGCAATGAGTATTATAATTATTCACAGCAGTTTTCATGGTACTATATAACATCCAATTTACAGAATTAAAGGTAATGTAATTCGAAAGAAAAATAGCTGGTTTTAAGGAATGAATGGCCATGTCAACTATTGGAAGCATCTTTGAATTGGAGCCTC-------TGTGTTCAGGTTTCACCAGGTTTATGTTTTTAATTAATATCCTATTCAGCTTGCTGTAATTTCCATTGAGGTTTTCTAGAACAAGACAAGTCAGAAATTGATCTTTAATCATAAGCTAAG-AGCAAACTGCCAAAGAACTGAGACAAATTTTGAAGAAAGAGGTCTATCAGGACTGACCATTTTAAGAGAATAAAGACTAATCAGACACACACGCATATGCACAAAAAGAGGGAGACAGAGCACAAAAATCCTATGAAATACatttaaaaaaa-----ttaattttttttaaGAAGAAGCATTTGATCTGCCAAAGAGAAGACTTAGCAGTTTGGAGATCTGACAGTGCTCATCAGATCAGTGCTAATCAGGGCAAGAAAATAACAAAATAAGACACCAAAAAATTACCTAAACTGTGAAAGATGAAGCTTTCAGAGTTCTCACAGAGAATTGGGATACTAAAGTACAAAGTTTA i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54724056 1121 + 109391073 TTTCATAATTTTAAACACTACTTTAAAACAGGGAGATGGTTTACCTTCAAAAAATTTGGCTCTCAACTCAAAGTTATCAAAGTATATCCTAGATGTAGTTTGCTTGTCAGGCTTCTACATGAAAATTTAAAAGGCTCCTGCATTTCAGAATGAGCCTAACATATGCAATTGCACTCATCCACTATGTCTAC--ATTGCCAACCAAATACTGACAGAGAGAGCTACAGAGTGCCACAGAGAGCTGGCAGCTCCTCTGTTTGCATTAGCTTCTACTTGCTTCTTCATCTTTCCTCTATGTCTGACACATTTCATGTTACTGTTTTTAAATATTCCCTTAGCTACAGAGCTAATGTGCTTATATCCGTAAGGGGTCTCATGTGAACCTCTAAATAATTAAAGATTCATTAGCTCCCTGGAGGGCCACCGTGATTTCCAAAACAAGTCACAATACCTAAAGATCTAATCGTACAATTTCCCTCAGAAATAGCC-----TTGAGGAAGAAGTCACATCACTCAGCAATGAGTATTATAATTATTCACAGCAGTTTTCATTGTACTATATAACATCCAATTTATAGAATTAAAGGTAATGTAATTCGAAAGAAAAATAGCTGGTTTTAAGGAATGAATGGCCATGTCAACTATTAGAAGCGTCTTTGAATTGGAGCCTC-------TATGTTCGGGTTTCACCAGGTTTATATTTTTAATTAATATCCTATTCAGCTTGCTGTAATTTCCATTGAGGTTTTCTAGAACAACACAAGTCAGAAATTGATCTTTAATTACAAGCTAAG-AGCAAACTGCCAAAGAATTGACAGAAATTTTGAAGAAAGAGGTCTATCAGGACTAACCATTTTAAGAGGATAAAGACTAATCAGACACACGCACATATGCACAAAAAGAGGGAGAGAGAGAACAAAAATCCTATGAAATACATTTAAAAAAA-----TTAA-TTTTTTTAAGAAGAAGCATTTGATCTGCCAAAGAGAAGAGTTAGCAGTTTGGAGATCTGACATTGTTAATC-------------TCAGGGCAAGAAAATAACAAAATAAGACACCAAAGAATTACCTAAACTGTGGAAGATGAAGCTTTCAGAGTTCTCACAGAGAAATGAGATACTAAAGTACCAAGTTTA i nomLeu3.chr12 C 0 C 0 s rheMac3.chr6 48581593 1118 + 180491593 ttttataattttaaaCACTACTTTAAAACAGGGAGATGGTTTACCTTCAAAAAATTTGGCTCTCAACTCAAAGTTATCAAAGTATATCCTAGACGTAGTTTGCTTGTCAGGCTTCTACATGAAAATTTAAAAGGTTCCCGCATTTCAGAATGAGCCTAACATATGTAATTGCAGTCATTCACTATGTCTAC--ATTGCCAACCAAATACTGACAGAGAGAGCTACAGAGTGCCACAGACAGCTGGCAGTTCCTCTGTTTGCATTAGCTTCTATTTGCTTCTTCATCTTTCCTGTGTGTCTGACACATTTCATGTTACTGTTTTTAAATGTTCCCTTAGCTACAGAGCCAATGTGCTTATATCTGTAAGGGGTCTCATGTGAACCTCTAAATAATTAAAGATTCATTAGCTCCCTGGAGGGCCACCACGATTTCCAAAACAAGTCACAATACCTAAAGATCTAATTGTACAATTTCCCTCAGAAATAGCCTAGCTTTGTGGAAGAAGTCACATCATTCAGCAATGAGTATTATAATTATTCACAGCAGTTTTCCTCATGCTATATAACATCTAATTTACAGAATTAAAGGTAATGTAATTCAAAAGAAAAATAGATGGTTTAAAGGAATGAATGGCCATGTCAACTATAGGAAGCATCTTTGGGTTGAAGCCTC-------TACGTTCAGGTTTCACCAGGTTTATGTTTTTAATTAATATCCTATTCAGCTTGCTGTAATTTCCATTGAGGTTTTCTAGAACAAGACAAGTCAGAAATTGATCTTTAATTATAAGGTAAG-AGCAAACTGCCAAAGAACTGAGACAAATTTTGAAGAAAGAGGTCTATCAGGACTAACTATTTTAAGAGAATGAAGACTAATCAGACACACACACATATGCACA--------GAGAGAGAGAACAAAAATCCTATGAAATACattttaaaaaa-----ttaa-tttttttaaGAGGAAGTATTTGATCTGCCAAAGAGAAGAATTAGCAGTTTGGAGATCTGACATTGCTAATC-------------TCAGGGCAAGAAAATAACAAAATAAGACACCAGAGAATTACCTCAACTGTGGAAGATGAAGCTTTCAGAGTTCTCACAGAGAATTGGAATACTAAAGTACAAAGTTTA i rheMac3.chr6 C 0 C 0 s macFas5.chr6 49904463 1117 + 181584905 TTTTATAATTTTAAACACTACTTTAAAACAGGGAGATGGTTTACCTTCAAAAAATTTGGCTCTCAACTCAAAGTTATCAAAGTATATCCTAGACGTAGTTTGCTTGTCAGGCTTCTACATGAAAATTTAAAAGGTTCCCGCATTTCAGAATGAGCCTAACATATGTAATTGCAGTCATTCACTATGTCTAC--ATTGCCAACCAAATACTGACAGAGAGAGCTACAGAGTGCCACAGACAGCTGGCAGTTCCTCTGTTTGCATTAGCTTCTATTTGCTTCTTCATCTTTCCTGTGTGTCTGACACATTTCATGTTACTGTTTTTAAATGTTCCCTTAGCTACAGAGCTAATGTGCTTATATCTGTAAGGGGTCTCATGTGAACCTCTAAATAATTAAAGATTCATTAGCTCCCTGGAGGGCCACCACGATTTCCAAAACAAGTCACAATACCTAAAGATCTAATTGTACAATTTCCCTCAGAAATAGCCTAGCTTTGTGGAAGAAGTCACATCATTCAGCAATGAGTATTATAATTATTCACAGCAGTTTTCCTCATGCTATATAACATCTAATTTACAGAATTAAAGGTAATGTAATTCAAAAGAAAAATAGATGGTTTAAAGGAATGAATGGCCATGTCAACTATAGGAAGCATCTTTGGGTTGAAGCCTC-------TACGTTCAGGTTTCACCAGGTTTATGTTTTTAATTAATATCCTATTCAGCTTGCTGTAATTTCCATTGAGGTTTTCTAGAACAAGACAAGTCAGAAATTGATCTTTAATTATAAGGTAAG-AGCAAACTGCCAAAGAACTGAGACAAATTTTGAAGAAAGAGGTCTATCAGGACTAACTATTTTAAGAGAATGAAGACTAATCAGACACACACACATATGCACA--------GAGAGAGAGAACAAAAATCCTATGAAATACATTTTAAAAAA-----TTAA--TTTTTTAAGAGGAAGTATTTGATCTGCCAAAGAGAAGAATTAGCAGTTTGGAGATCTGACATTGCTAATC-------------TCAGGGCAAGAAAATAACAAAATAAGACACCAGAGAATTACCTCAACTGTGGAAGATGAAGCTTTCAGAGTTCTCACAGAGAATTGGAATACTAAAGTACAAAGTTTA i macFas5.chr6 C 0 C 0 s papAnu2.chr6 46576072 1117 + 174439528 ttttataattttaaacactACTTTAAAACAGGGAGATGGTTTACCTTCAAAAAATTTGGCTCTCAACTCAAAGTTATCAAAGTATATCCTAGACGTAGTTTGCTTGTCAGGCTtctacatgaaaatttaaaaggttCCCGCATTTCTGAATGAGCCTAACATATGTAATTGCAGTCATTCACTATGTCTAC--ATTGCCAACCAAATACTGACAGAGAGAGCTACAGAGTGCCACAGACAGCTGGCAGTTCCTCTGTTTGCATTAGCTTCTacttgtttcttcatctttcctgTGTGTCTGACACATTTCATGttactgtttttaaatgttcCCTTAGCTACAGAGCTAATGTGCTTATATCTGTAAGGGGTCTCATGTGAACCTCTAAATAATTAAAGATTCATTAGCTCCCTGGAGGGCCACCACGATTTCCAAAACAAGTCACAATACCTAAAGATCTAATTGTACAATTTCCCTCAGAAATAGCCTAGCTTTGAGGAAGAAGTCACATCATTCAGCAATGAGTATTATAATTATTCACAGCAGTTTTCCTCATGCTATATAACATCTAATTTACAGAATTAAAGGTAAtgtaattcaaaagaaaaatagatggtTTAAAGGAATGAATGGCCATGTCAACTATAGGAAGCATCTTTGGGTTGAAGCCTC-------TACGTTCAGGTTTCACCaggtttatgtttttaattaatatCCTATTCAGCTTGCTGTAATTTCCATTGAGGTTTTCTAGAACAAGACAAGTCAGAAATTGATCTTTAATTATAAGGTAAG-AGCAAACTGCCAAAGAACTGAGACAAATTTTGAAGAAAGAGGTCTATCAGGACTAACTATTTTAAGAGAATGAAGACtaatcagacacacacacatatgcaca--------gagagagagaacaaaaatcctatgaaatacatttaaaaaaa-----ttaa--ttttttaagaggaAGCATTTGATCTGCCAAAGAGAAGAGTTAGCAGTTCGGAGATCTGACATTGCTAATC-------------TCAGggcaagaaaataacaaaataagacACCAGAGAATTACCTAAACTGTGGAAGATGAAGCTTTCAGAGTTCTCACAGAGAATTGGAATACTAAAGTACAAAGTTTA i papAnu2.chr6 C 0 C 0 s chlSab2.chr4 46922642 1114 + 91010382 ttttatAATTTTAAACACTACTTTAAAACAGGGAGATGGTTTACCTTCAAATAATTTGGCTCTCAACTCAAAGTTATCAAAGTATATCCTAGACGTAGTTTGCTTGTCAGGCTTCTACATAAAAATTTAAAAGGTTCCCGCATTTCAGAATGAGCCTAACATATGTAATTGCAGTCATTCACTATGTCTAC--ATTGCCAACCAAATACTAACAGAGAGAGCTACAGAGTGCCACAGAGAGCTGGCAGCTCCTCTGTTTGCATTAGCTTCTACTTGCTTCTTCATCTTTCCTGTGTGTCTGACACATTTCATGCTACTGTTTTTAAATGTTCCCTTAGCTACAGAGCTAATGTGCTTATATCTGTAAGGGGTCTCATGTGAACCTCTAAATAATTAAAGATTCATTAGCTCCCTGGAGGGCCACCACGATTTCCAAAACAAGTCACAATACCTAAAGATCTAATTGTACAATTTCCCTCAGAAATAGCCTAGCTTTGAGGAAGAAGTCACATCATTCAGCAATGAGTATTATAACTATTCACAGCAGTTTTCCTCATGCTATATAACATCTAATTTACAGAATTAAAGGTAATGTAATTCAAAAGAAAAATAGATAGTTTAAAGGAATGAATGGCCATGTCAACTATTGGAAGCATCTTTGGGTTGAAGCCTC-------TACGTTCAGGTTTCACCAGGTTTATGTTTTTAATTAATATCCTATTCAGCTTGCTGTAATTTCCATTGAGGTTTTCTAGAACAAGACAAGTCAGAAATTGATCTTTAATTATAAGGTAAG-AGCAAACTGCCAAAGAGCTGAGACAAATTTTGAAAAAAGAGGTCTATCAGG----ACTATTTTAAGAGAATGAAGACTAATCAGACACACACACATATGCACA--------GAGAGAGAGAACAAAAATCCTATGAAATACATTTAAAAAAA-----TTAA-TTTTTTTAAGAGGAAGCATTTGATCTGCCAAAGAGAAGAGTTAGCAGTTTGGAGATCTGACATTGCTAATC-------------TCAGGGCAAGAAAATAACAAAATAAGACACCAGAGAATTACCTAAACTGTGGAAGATGAAGCTTTCAGAGTTCTCACAGAGAATTGGAATACTAAAGTACAAAGTTTA i chlSab2.chr4 C 0 C 0 s calJac3.chr2 47279646 1116 - 204313951 TTTTATAATTTTAAACACTACTTTAAAACAGGAAGAAGGTTTACCTTCAACAAATTTGGCTCTTAACTAAAAGATATAAAAGTATATCCTCGATGTAGTTTCCTTGTCAGGCTTCTACATGAAAATTTAAAAGGCTCCTGCATTTCCGAATGAGCCTAACATATGTAATTGCACTCATGCACTATGTCTAC--ATTGCCAACCAAGTACTGACAGAGAGAGCTACAGAGTGCCACAGAGAGCTGGCAGCTCCTCTGTTCGCATCAGCTTCTACTTGCTCCTTCATCTTTCCTCTGTGTCTGGCACATTTCATATTACTGTTTTTAAATGTTCCCTTAGCTACAGAGCTAATGTGCTTATATCTGTAAGGGGTTTCATGTGAACCTGTAAATAATTAAAGATGCATTAGCTCCCTGGAAGGCCACCATGATTTCCAAAACAAGCCACAATACCTAAAGTTCTAATTGTACAATTTTCCTCAGAAATAGCCTAGCTTTGAAGAAGAAGTCACATCACTCACCATTGAGTATTATAATTACTCACAGCAGTTTTCCTGGTACTACATAACATCCAATTTACAGAATTAAAGGTAATGTAATTCAAAAGAAAAATAGCTGGTTTTAAGGAATGAATGGCCACATCAACTACTGGAAGTGTCTTTGGGTGGGAGACTTATGTTTGGGTGTTTGGGTGTCACCAGGTTTATGTTTTTAATTAATATCCTATTGAGCT---TGTAATTTCCATTGAGCTCTTCTAGAACAAGACAAGTCAGAAACTGATCTTTAATTATAAACTAAA-AGCAAACTGCCAGAGAACTGAAACAAATTTTGAAAAAAGAGGTCTATCAGGACTCACCATTTTAAGAGGATAAAGACTAATCAGACACACACAAGCACGCACA------------TAGAGAACAAAAATCCTACGAAATACa--taaaaaaa-----ttaa-tttttttaaGAGGAAGCATTTGATTTGCCAAAGAGAAGAGTTAGCAGTTTGGAGGTCTGACATTGCTAATC-------------TCAGGGCAAGAAAGTAACAAAATAAGACACCAAAGAATTATCTAAACTCTAGAAAATGAAGCTTTCAGCATTCTCACATAGAATTGGGATACTAAAGTACAAAATTTA i calJac3.chr2 C 0 C 0 s canFam3.chr4 23982544 1054 - 88276631 TTCCATAATTTTAAACACTACTTTAAAA----GAAGCAATTTCCCTT----AAATTTGG---TCAACTACAAGATGTCAGAGTATATTCTACTTGTAATTTGTTTCTCAAGATCCTGTATAAAAATTTGAAAGGCCTCTATGTTTCAGAATGTACCTAACATGGGTAATTCCACACATGCACAATGTTCTCCAACTGTCAACCAAATACTGAT----AGAGCAACAGGGTGCTACAGAGATATGATAGCACCTGGGTTTGCATTTGCTTC-------TCCTCCTTCTTTCCTCTGTATCTGACATGTTTCATGTCATTGCTAT-----------TTAGCTGCTGAGTTAATATACTTGTATCTATAAGGGGTCTCATGTGAACCAGTAAATGATTAAAGACACATTAGCTCCCTGGAGAGCCAACATGACTCCCTGAACAAGCAAGGATACCTAGGGACCTAATCATGCAATTTCCCT---AAACCACCTAGCTTTGAGGAAGAAGTCACATCACTCAGCAATGAGTATTATAATTATTCACAGCGGTTTGCCTGGTGCAATATAACATTCAATTTACAGAATTAGAGGTAATGTGATTCAAAAGAAAAAGAGCTGGTTTGAAGAAATGAATGGCCACATCAACTACTAGAAGTATCTTTGGGTTAGATCCTC-------TATATTAAGCTTTCGGAAGGCTTATATTTTTAACTAATATCCTATTCAGCCTGATAAAACTTCCATTGAGCTTCCCAAAGACAAAACAACTCAGAAACTGATCTTTGATTATAAGCCAAATAGCAGA--GCCA-AGAATTGAGACAAATTTTGAAGAAAGAGGTCTATCAGGACTAACCATCTCAAAAGAATAAAGACTAATCAGACA-----AAAAAAGAACC---------AAGTATTGTATAAAAACCCTATGAAATACAGTGAGAAAAAATAATTTAA-CTTTTTTAAGATAGAAGGTATAAACTTCC--AGAGAAGAGTTAGTAGTTT----------------------------------T---GGTAGTAAAAGAGCCAAATAAAATACCAAAGAATTA-CTGAAGTCTAGAAGATCAAGCTCTAAATGTTCTCAAAAAGAAATGGGATGCTAAAAGATATGGTTTA i canFam3.chr4 I 232 C 0 a score=588400.000000 s hg38.chr1_KI270765v1_alt 110762 198 + 185285 AGAGGTGTAATCTATTAATGTTTAATTTATGTCCCAAATACTTAAAAACTATGTTTCATTGTTATACATATTTATTTTATTATAAAGATAATGAATGCAGTAGGGTTAGATTTAAATAATTCATTGGGTTTAAAATGAGAAATGAAAGTCTGGCTTTTTACAACCTACAGTCTTATCACCAAAGTTAGCTATTGTTAA s panTro4.chr5 117732427 198 - 182651097 AGAGGTGTAATATATTAATGTTTAATTTATATCCCAAATACTTAAAAACTATGTTTCATTGTTATACATATTTATTTTATTATAAAGATAATGAATGCAGTAGGGTTAGATTTAAATAACTCATTGGGTTTAAAATGAGAAATGAAGGTCTGGCTTTTTACTACCTACAGTCTTACCATCAAAGTTAGCTATTGTTAA i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48806674 187 + 183952662 AGAGGTG-----------TGTTTAATTTATATCCCAAATACTTAAAAACTATGTTTCATTGTTATACATATTTATTTTATTATAAAGATAATGAATGCAGTAGGGTTAGATTTAAATAACTCATTGGATTTAAAATGAGAAATGAAAGTCTGGCTTTTTAGTACCTACAGTTTTACCACCAAAGTTAGCTATTGTTAA i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54725177 198 + 109391073 AGAGGTGTAATATATTAATGTTTAATTTATATCTCAAATACTTAAAAGCTATGTTTCATTGTTATACATATTTATTTTATTATAAAGATAATGAATGCAGTAGGGTTAGATTTAAATAACTCATTGGATTTAAAATGAGAAATGAAAGTCTGGCTTTTTACTACCTACAGTCTTATCGCCAAAGTTAGGTATTGTTAA i nomLeu3.chr12 C 0 C 0 s rheMac3.chr6 48582711 198 + 180491593 AGAGGAGTAATATATTAATGTTTAATTTATATCCCAAATACTTAAAAACTATGTTTCATTGttatatatatttattttattataaaGATAATGAATGCAGTAGAGTTAGATTTAAATAACTCATTGGGTTTAAAATGAGAAATGAAAGTCTGGCTTTTTACTACCTACAGTCTTATCACCAAATTTAGCTATTGTTAA i rheMac3.chr6 C 0 C 0 s macFas5.chr6 49905580 198 + 181584905 AGAGGAGTAATATATTAATGTTTAATTTATATCCCAAATACTTAAAAACTATGTTTCATTGTTATATATATTTATTTTATTATAAAGATAATGAATGCAGTAGAGTTAGATTTAAATAACTCATTGGGTTTAAAATGAGAAATAAAAGTCTGGCTTTTTACTACCTACAGTCTTATCACCAAATTTAGCTATTGTTAA i macFas5.chr6 C 0 C 0 s papAnu2.chr6 46577189 194 + 174439528 AGTGGAGtaatatattaatgtttaatttatatccCAAATACTTAAAAACTATGTTTCattgttatatatattaattttattataaagataatgaATGCAGTAGAGTTAGATTTAAATAACTCATTGggtttaaaatgagaaatgaaagtcTGGCTTTTTACTACCTACAGTCTTATCACCAAATTTAGCTA----TAA i papAnu2.chr6 C 0 C 0 s chlSab2.chr4 46923756 198 + 91010382 AGAGGAGTAATATATTAATGTTTAATTTATATCCCAAATACTTAAAAACTATGTTTCATTGTTATATATATTTATTTTATTATAAAGATAATGAATGCAGTAGAGTTAGATTTAAATAACTCATTGGGTTTAAAATGAGAAATGAAAGTCTGGCTTTTTACTACCTAGAGTCTTATCACCAAATTTAGCTATTGTTAA i chlSab2.chr4 C 0 I 8177 s calJac3.chr2 47280762 198 - 204313951 AGAGATATAATATAGTAATATTCAATTTATATCCCAAACACTTAAAAATTATGTTTCATTGTTATACATATTTATTTTATTATAAAGATAATGCATGCAGTAGGGTTAGATTTAAATAACTCACTGGGCTTAAAATGAGAAATTAAAGTCTGGCTTTTTGCTACCTACACTCTTATCACCAAAGTTAGCTGTTGTTAA i calJac3.chr2 C 0 C 0 e canFam3.chr4 23983598 0 - 88276631 C a score=1249953.000000 s hg38.chr1_KI270765v1_alt 110960 433 + 185285 TAACTTCTTGTCCATTCTTGTATGTGTTATGG----Tttctttcttagaaagaagtatgctatactagtatacatgctatttattcatgaaccttgcacttatcatgtaatcatatgtcttagtggtcttttcataatagatgtctctctttcccacgctgtcagtggtgattgcatgaggcattgtacagacgtaccaataattacttactctgtgtcatattgttggttattcagattgttttcactttgcccttgcagacaac-actgcaacgaacatccttatgcatatcttattccaaatacatcatcgtgatggctgtgtgagagaaatatacattgttgattttatt--tttttattttttataatttcaacttttgattttagatacagtgggtacatgtgcaggtttgttacatgggtatgttgtgtaatg s panTro4.chr5 117732625 433 - 182651097 TAATTTCTTGTCCATTCTTGTATGTGTTATGG----TTTctttcttagaaagaagtacactatactagtatacatactatttattcatgaaccttgcatttgtcatgtaatcatatgtcttagtggtcatttcataatagatgtctctctttcccatgctgtcagtggtgactgcatgaggcattgtacagacgtaccagtaattacttactctgtgtcatattgatggttattcagattgttttcactttgcccttgcagacaac-actgcaatgaacatccttattcatgtattatcccaaatacatcacagtgattgctgtctgagagaaatatacattgttgattttatt--tttttactttttataatttcaacttttgattttagatacagtgggtacatgtgcaggtttgttacatgggtatgttgtgtaatg i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48806861 430 + 183952662 TAATTTCTTGTCCATTCTTGTATGTGTTGCAG----Tttctttcttagaaagaagtatgctatactagtatacatactatttatccatgaaccttgcatttatcatgtaatcatacgtcttagtggtcatttcataacagatgtctctctttcccatgctgtcagtggtgactgcatgaggcattgtacggacgtaccagtaactacttactctgtgtcatattgatggttattcagattgttttcactttgcccttgcagacaac-actgcaatgaacatccttatgcatatattattccaaatacatcatagtgattgctgtctgagagaaatatacattgttgatt---tt--tttttattttttataatttcaacttttgattttagatacagtgggtacatgtgcaggtttgttacacggatatgttgtgtaatg i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54725375 433 + 109391073 TAATTTCTTGTCCATTCTTGTATGTGTTACGG----Tttctttcttagaaagaaatatgctatactagtatacatactatttattcatgaaccttgaatttatcatgtaattatatgtcttagtggtcttttcataatagatg--tctctttcccatgctgtcagtggtgactgcatgaggcattgtacagatgtaccaataattacttactctgtgtcacactaatggttattcagattgttttcactttgcccttgcagacaac-actgcaatgaacatccttatgcatatattattccaaatacatcatagtgatggctgtgtgagagaaatatacattgttgattttatttatttttattttttataatttcaacttttgattttagatacagtgggtacatgtgcaggtttgttacatgggtatgttgtgtaatg i nomLeu3.chr12 C 0 C 0 s rheMac3.chr6 48582909 434 + 180491593 TAATTTTTTGTCCATTCTTGTATGTGTTATGGTTtctttctttcttagaaagaactatgctatactagtatacatactatttattcatgaaccttgcatttatcacgcaatcatatgtcttagtggta----cataatagatgtatctctttcccatgctgtcagtggtgactgcatgaggcattgtatagacgtaccattaattacttactctctgtcatactgatggttattcagattgttttcactttgcccttgcaaacaacaactgcaatgaacatccgtatgcatatattattccaaatacatcatagtgattgctgtgtgagagaaataaacattgttgattttatt--tttttattttttataatttcaacttttgattttagatacagtgggtacatgtgcgggtttgttacatgggtatgttgtgtaatg i rheMac3.chr6 C 0 C 0 s macFas5.chr6 49905778 434 + 181584905 TAATTTCTTGTCCATTCTTGTATGTGTTATGGtttctttctttcttagaaagaactatgctatactagtatacatactatttattcatgaaccttgcatttatcacgcaatcatatgtcttagtggta----cataatagatgtatctctttcccatgctgtcagtggtgactgcatgaggcattgtatagatgtaccattaattacttactctctgtcatactgatggttattcagattgttttcactttgcccttgcaaacaacaactgcaatgaacatccttatgcatatattattccaaatacatcatagtgattgctgtgtgagagaaataaacattgttgattttatt--tttttattttttataatttcaacttttgattttagatacagtgggtacatgtgcgggtttgttacatgggtatgtcgtgtaatg i macFas5.chr6 C 0 C 0 s papAnu2.chr6 46577383 434 + 174439528 TAATTTCTTGTCCATTCTTGTATGTgttatggtttctttctttcttagaaagAACTATGCTATACTAGTATACATACTATTTATTCATGAACCTTGCATTTATCATGCAATCATATGTCTTAGTGGTA----CATAATAGATGTATCTCTTTCCCATGCTGTCAGTGGTGACTGCATGAGGCATTGTATAAACGTACCATTAATTACTTACTCTCTGTCATACTGATGGTTATTCAGATTGTTTTCACTTTGCCCTTGCAAGCAACAACTGCAATGAACATCCTTATGCATATATTATTCCAAATACATCATAGTGATTGCTGTGTGAGAGAAATAAacattgttgattttatt--tttttattttttataatttcaacttttgattttAGATACAgtgggtatatgtgcaggtttgttacatgggtatgttgTGTAATG i papAnu2.chr6 C 0 M 455 s chlSab2.chr4 46932131 434 + 91010382 taatTTCTTGTCCATTCTTGTATGTGTTATGGtttctttctttcttagaaagaactatgctatactagtatacatactacttattcatgaaccttgcatttatcatgcaatcatatgtcttagtggta----cataatagatgtatctctttcccatgctgtcagtggtgactgcatgaggcattgtatagacgtactattaattacttactctgtgtcatactgatggttattcagattgttttcactttgcccttgcaaacaacaactgcaatgaacatccttatgcatatattattccaaatacatcatagtgattgctgtgtgagaaaaataaacattgttgattttatt--tttttattttttataatttcaacttttgattttagatacagtgggtacatgagcaggtttgttacatgggtatgttgtgtaatg i chlSab2.chr4 I 8177 C 0 s calJac3.chr2 47280960 423 - 204313951 TAATTTCTCGTCCATCCTTATGTGT-----------TATAtttcgtacaaagaagtatgccataccagtatacatcatatttattcatgaa-cttgcatttatcatgtaatgatacgtcttagtggtcttttcataataaatgtatctctttctcatgctgtcagtggtgactgcatgatgcattgtgcagatgtaccatgcattactcactccttgtcatattgatggttattcagattgttttcattttgcccttgcaaacaac-actacaataaatatccttatgcatgtattattgcaaatatatcat-gtgattGCTGTGTGAAAGAAATATACATTGTTGatttaatt--tttttattttttataattttaactttt-atgttagatacagtgggtacatgtgcagctttattacctgggtatgttgtgtaatg i calJac3.chr2 C 0 C 0 e canFam3.chr4 23983598 0 - 88276631 C a score=1404609.000000 s hg38.chr1_KI270765v1_alt 111393 607 + 185285 ctgaggtttgcagcatgattgatccgatcactcaggtactaggcatagtagttgtttttcaacctttaccccctccctccttctaccctcgagtagtccccagtttctattgttcccatctttgtgtccacgtgtactcaatgtttagctcctgcttataagtgagaatatgtggtatttggttttctattcctgtgttaattcgcttagcataatggcatcgagttgcatccacgttgctgtaaaggacatgattttattcttttttatggctgcaaagtattccatgacatatatgtaccatattttctttatccaatccacagttgatgggcacctaggttgattccatgtcttagcgattgtgaattacactgctgattttaatagaaaccactaa-tttttatgccaaaaa--aatcatcaatgtgcacatgctccaaggctgtgtgagcatagcccttttccttgggatgtcaacaacactgggttttatcaaaatataatttttgccaatttattagttaacaaatgctaactcagtgctatttggatttgaactaccactggtgctgagcaactttttacatagtcactggcaatttattta s panTro4.chr5 117733058 608 - 182651097 ctgaggtttgctgcatgattgatccgatcacccaggtactaggcatagtagttgtttttcaacctttaccccctccctccttctaccctcgagtagtccccagtttctattgttcccatctttgtgtccatgtgtactcaatgtttagctcctgcttataagtgagaatatgtggtatttggttttctattcctgtgttaattcgcttagcataatggcgtcgagttgcatatatgttgctgtaaaggacataattttattcttttttatggctgcaaagtattccatggcatatatgtaccacattttctttatccaatctaccattgatggacacctaggttgattccatgtcttagcaattgtgaattacactgctgattttaatagaaaccactaattttttacgccaaaaa--aatcatcaatgtgcacatgctccaaggctgtgtgagcatagccctttttcttgggatgtcaacaacactgggttttatcaaaatataagttttgccaatttattagttaaaaaatgctaactcaatgctatttggatttgaactaccactggtgctgagcatctttttacatattcactggcaatctattta i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48807291 607 + 183952662 ctgaggggtgctgcatgattgatccgatcacccaggtactaggcatagtagttgtttttcaacctttaccccctccctccttctaccctcgagtagtccccagtttctattgttcccatctttgtgtccatgtgtactcaatgtttagctcccgcttataagtgagaatatgtggtatttggttttctattcctgtgttaattcgcttagcataatggcgtcgagttgcatccatgttgctgtaaaggacatgattttattcttttttatggctgcaaagtattccatggcatatatgtaccacattttctttatcgaatccaccgttgatggacacctaggttgattccatgtcttagcgattgtgaattacactgctgattttaatagaaaccactaa-tttttacgccaaaaa--aatcatcaatgtgcacatgctccaaggctgtgtgagcatagccctttttcttgggatgtcaacaatactgggttttatcaaaatataagttttgccaatttattagttaaaaaatgctaactcaatgctacttggatttgaactaccactggtgctgagcatctttttacatattcactggcaatttattta i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54725808 607 + 109391073 ctgaggtttgctgtgtgattgatccgatcacccaggtactaggcatagtagttgtttttcaacctttaccccctccctccttctaccctcgagtagtccctagtttctattgttcccatctttgtgtccatgtgtactcaatgtttagctcctgcttataagtgagaatatgtggtatttggttttctattcctgtgttaattcgcttagcataatggcatctagttgcatccatattgctgtaaaggacatgattttattcttttttatggctgcaaagtattccatggcatatatgtaccatattttctttatccaatccaccgttgatgggcacctaggttgattagatgtcttagcgattgtgaattacactgctgatttcaatagaaaccactaa-tttttatgccaaaaa--aatcatcaatgtgcacatgttccaaggctgtgtgagcatagccctttatcttgggatgtcaacaacactgggtttcatcaaaatataatttttgccaatttattagttaaaaaatcctaactcaatgctatttggatttgaactaccactggtgctgagcatctttttacatattcactggcaatttattta i nomLeu3.chr12 C 0 C 0 s rheMac3.chr6 48583343 605 + 180491593 ctgaggtttgctgcatgattgatccaatcacccaggtactaggcatagtagttggttttcaacctttaccccctccctccttctaccctcgagtagtccccagtttctattgtttccgtctttgtgcccatgtgtacttaatgtttagctcctacttataagtgagaatatgtggtatttggttttctattcctgtgttaatttgcttagcctaatggcgtcaacctgcatccatgttgctgtaaaggacatgattttattcttttttatggctggcaaatattccatggcatatatgtatccca-tttctttatccaattcactgttgatgggcacctaggttgattccatgtcttagcgattgtgaattacactgctgattttaatagaaaccactaa-tttttacgccaaaaa--attcatcaatgtgcacatgctccaaggctgcatgagcatagccctttttctcaggattttaacagcactgggttttatc-aactacaagttttgccaatttattagtttaaaaatgctaactcagtgctatttggatttgaactaccactggtgctaagaatctttttacatattcactggcaatttattta i rheMac3.chr6 C 0 C 0 s macFas5.chr6 49906212 605 + 181584905 ctgaggtttgctgcatgattgatccaatcacccaggtactaggcatagtagttggttttcaacctttaccccctccctccttctacccttgagtagtccccagtttctattgtttccgtctttgtgcccatgtgtacttaatgtttagctcctacttataagtgagaatatgtggtatttggttttctattcctgtgttaatttgcttagcctaatggcgtcaacctgcatccatgttgctgtaaaggacatgattttattcttttttatggctgcaaagtattccatggcatatatgtatcaca-tttctttatccaattcactgttgatgggcacctaggttgattccatgtcttagcgattgtgaattacactgctgattttaatagaaaccactaa-tttttacgccaaaaa--attcatcaatgtgcacatgctccaaggctgcatgagcatagccctttttctcaggattttaacagcactgggttttatc-aactacaagttttgccaatttattagtttaaaaatgctaactcagtgctatttggatttgaactaccactggtgctaagaatctttttacatattcactggcaatttattta i macFas5.chr6 C 0 C 0 s chlSab2.chr4 46932565 606 + 91010382 ctgaggtttgctgcatgattgatccaatcacccaggtactaggcatagtagttgtttttcaacctttaccccctccctccttctaccctcgagtagtccccagtttctattgtttccgtctttgtacccatgtgtacttaatgtttagctcctacttataagtgagaatatgtggtgtttggttttctattcctgtgttaatttgcttagcctaatggcgtcaacctgcatccatgttgctgtaaaggacatgattttattcttttttatggctgcaaagtattccatggcatatatgtaccaca-tttctttatccaattcactgttgatggacacctaggttgattccacgtcttagtgattgtgaattacactgctgattttaatagaaaccactaa-tttttacgctaaaaa--attcatcaatgtgcacatgctccaaggctgcgtgagcatagccctttttctcaggattttaacagcactgggttttatcaaactacaagttttgccaatttattagttaaaaaatgctaactcagtgctatttggatttgaactaccactggtgctaagaatctttttacatattcactggcaatttattta i chlSab2.chr4 C 0 C 0 s calJac3.chr2 47281383 607 - 204313951 ctgagatttgctgtatgatttatccaatcacccaggtactcagcatagtagttgtttttcaactttta-cccctccctccttctacactcgagtattccccagtttctattgttcccatctttgtgtccatgtgtactcagtgtctagctcctacttataaatgagaatatgtgatatttggttttctattcctgtgttaattcacttagcttaatggcctcaagctgcacccatgttgttgtaaaggacatgattttattc-tttttatggctgcaaagtattccatggcgtatatgtacctcattttctttatccaatccaccattgatgggcacctaggttgattccatgtcttactgattgtgaattacactgcCAATTTTAATAGAAACCACTGA-TTTTTATGCCAAAAAATATTCATCAGTGTGCACATGCTCCGAGGCTGCAGGAGCCTAGCTCTTTTTCTCAGGATGGCAAcaacactggatttcatcaaaatataagttttaccaatttatcagttaaaaacctctagctcagtgctatttgcatttgaactaccactggtgctgatcatggttttacataatcactggcaatttatttc i calJac3.chr2 C 0 C 0 e canFam3.chr4 23983598 0 - 88276631 C e papAnu2.chr6 46577817 455 + 174439528 M a score=326796.000000 s hg38.chr1_KI270765v1_alt 112000 112 + 185285 tctttctctg---ttgtttatctttttctgtgtaataattttccctatcttctactcttttaaacattaagttttcactgttttcttaataatttttaagTTTAAAAAGTGACCT s panTro4.chr5 117733666 112 - 182651097 tctttctctg---ttgtttatctttttctgtgtaataattttccttatcttccactcttttaaatattaagttttcactgttttcttaataatttttaagTTTAAAAAGCGACCT i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48807898 108 + 183952662 tctttctctg---ttgtttatcttttTCTGTGTAATAATTTTCCCTATCTTCCACTCTTTTAAAT----AGTTTTCACTGTTTTCTTAATAATTTTTAAGTTTAAAAAGTGACCT i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54726415 112 + 109391073 tctttctctg---ctgtttatctttttctgtgtaataattttccctatcttctacccttttaaatattaagttttcactgttttcttaataatttttaagTTTAAAAAGTGACAT i nomLeu3.chr12 C 0 C 0 s rheMac3.chr6 48583948 112 + 180491593 cctttctctg---ttgtttatctttttctgtgtagtaattgtccctatcttctactcttttaactattaagttttcactgttttcttaataatttttaagTTTAAAAAGTGACCT i rheMac3.chr6 C 0 C 0 s macFas5.chr6 49906817 112 + 181584905 tctttctctg---ttgtttatctttttctgtgtagtaattgtccctatcttctactcttttaactattaagttttcactgttttcttaataatttttaagTTTAAAAAGTGACCT i macFas5.chr6 C 0 C 0 s papAnu2.chr6 46578273 114 + 174439528 tctttttctgtgtttgtttatctttttctgtgtAGTAATTGTCCCTATCTTCTACTCTTTTAACTATTAAGTTTTCActgttttcttaataatttttaagttt-aaaagtgacct i papAnu2.chr6 M 455 C 0 s chlSab2.chr4 46933171 112 + 91010382 tctttctcta---ttgtttatctttttctgtgtagtaattgtccctatcttctactcttttaactattaagttttcaccgttttcttaataatttttaagTTTAAAAAGTGACCT i chlSab2.chr4 C 0 C 0 s calJac3.chr2 47281990 112 - 204313951 tctttctctg---tTGTTTCTCTTTTTCTATGTAGTAATTGTCCCTATGTTCTACTCTTTTAAATAGTAGGTTTTCACTGTTTCCTTAATAATTTTTAAGTCTAAAAAGTGAACT i calJac3.chr2 C 0 C 0 e canFam3.chr4 23983598 0 - 88276631 C a score=713746.000000 s hg38.chr1_KI270765v1_alt 112112 298 + 185285 TTTggctgggcgcagtggctcacgcctgtaatcccaacactttgggaggccaaggcgggtggatcacaaggtcaggagatcaagaccatcctgcccaacatggtgaaaccccgtctctgctaaaaatacaaaaattggctggggtggtggcacgtgcctgtaatcccagctactcgggaggctgaggcagaagaatcacttgaaccagggagttggaggttgtaatgagccaagatcacgccactgtgctccagcctggcgacagagcgagactccgtctc---------------aaaagaaaaaGTGACCA s panTro4.chr5 117733778 302 - 182651097 TTTggctgggcacagtggctcacacctgtaatcccaacactttgggaggccgaagcaggtagatcacaaggtcaggagatcgagaccatcctacccaacatggtgaaaccccgtctctactaaaaatacaaaaattggctggggtggtggcacatgcctgtaatcccagctactcgggaggctgaggcagaagaatcacttgaaccagggagttggaggttgtaatgagccgagaccacgccactgtgctcccgcctggcgacagagcgagactcggtctc-----------aaataaaaaaagaaGTGACCA i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48808006 298 + 183952662 TTTggcagggcgcagtggctcacgcctgtaatcccaacactttgggaggccgaggcaggtggatcacaaggtcaggagatcgagaccatcctgcccaacatggtgaaaccccgtctctactaaaaatacaaaaattggctggggtggtggcacatgcctgtaatcccagctactcgggaggctgaggcagaagaatcacttgaaccagggagttggaggttgtaatgagccgagatcacgccactgtgctccagcctggcgacagagcgagactccgtctc---------------aaaaaaaaaaGTGACCA i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54726527 313 + 109391073 TTTggccaggcgcagtggctcatgcctgtaatcccaacactttgggaggccaaggtgggcggatcacaaggtcaggagattcagaccatcctgcccaacatggtgaaaccccgtctctactaaaaatacaaaaattggctggggtggtggcacgtgcctgtaatcccagctactagggaggctgaggcagaagaatcacttgaaccagggagttggaggttgtaatgagctgacatcacgccactgtgctccagcctggcaacagggcgagactccatctcaaaaaaaaaaaaaaaaaaaaaaaaaGTGACCA i nomLeu3.chr12 C 0 C 0 s rheMac3.chr6 48584060 306 + 180491593 TTTggccgggtgcagtggctcatgcctgtaatcccagcactttgggaggctgaggcgggcagatcataaggtcaggagatcgagaccatcctgcccaacatggtgaaaccccatctctactaataatacataaattagctggggtggtggcatgtgcctgtaatcccagctactcgggaggctgaggcagaagaatcacttgaaccaaagagttggaggttgcagtgagccaagatcacgccactgtgctccagcctggcaacagaacgagactccatctc-------aaaaaaaaaaaaaaaaaaGTGACCA i rheMac3.chr6 C 0 C 0 s macFas5.chr6 49906929 301 + 181584905 TTTggccgggtgcagtggctcatgcctgtaatcccagcactttgggaggctgaggcgggcagatcataaggtcaggagatcgagaccatcctgcccaacatggtgaaaccccatctctactaataatacataaattagctggggtggtggcatgtgcctgtaatcccagctactcgggaggctgaggcagaagaatcacttgaaccaaggagttggaggttgcagtgagccaagatcacgccactgtgctccagcctggcaacagaacgagactccatctc------------aaaaaaaaaaaaaGTGACCA i macFas5.chr6 C 0 C 0 s papAnu2.chr6 46578387 305 + 174439528 tttggccgggcgcagtggctcacgcctgtaatcccagcactttgggaggctgaggcgggcagatcataaggtcaggagatcgagaccatcctgcccaacatggtgaaaccccatctctactaataatacataaattagctggggtggtggcatgtgcctgtaatcccagctactcgggaggctgaggcagaagaatcacttgaaccaaggagttggaggttgcagtgagccaagatcaggccactgtgctccagcctggcaacagaacgagactccatctc--------aaaaaaaaaaaaaaaaagtgacca i papAnu2.chr6 C 0 C 0 s chlSab2.chr4 46933283 305 + 91010382 TTTggccgggcacagtggctcacgcctgtaatcccagcactttgggaggctgaggcgggcagatcataaggtcaggagatcgagaccatcctgcccaacatggtgaaaccccatctctactaataatacataaattagctggggtggtggcatgtgcctgtaatcccagctactcaggaggctgaggcagaagaatcacttgaaccaaggagttggaggttgcagtgagccaagatcacgccactgtgctccagcctggcgacagagcgagactccatctc--------aaaaaaaaaaaaaGGGGGGGACCA i chlSab2.chr4 C 0 C 0 e calJac3.chr2 47282102 0 - 204313951 C e canFam3.chr4 23983598 0 - 88276631 C a score=725509.000000 s hg38.chr1_KI270765v1_alt 112410 244 + 185285 TTTTATCTGCTGCATATAATTCTAATGATATTTCTCAATTCGTTTATCTTTTAACAATGGTAATATATAATGTCTTGCTATTTAGAAAGATTTTTAAAAGTATTTTACATAAAGAAATTTTTATTCTTTGCCATTAATACTTGCAGGTTTGGAATTTTCAGGACCTCCTCAAAGGCCACCTACAGGAAATGCTCTTCAAAGACATTTCACTTTTTCCCCACTTGATTGTGGAGCAAAGACTAAC s panTro4.chr5 117734080 243 - 182651097 TTTTATCTGCTGCATATAATTCTAATGATATTTCTCAATTCGTTTATCTTTTAACAATGATAATATATAATGTCTTGCTATTTAGAAAGATTTTTAAAAGTATTTTACATAAACAAA-TTTTATTCTTTGCCATTAATACTTGTAGGTTTGGAATTTTCAGGACCTCCTCAAAGGCCACCTACAGGAAATGCTCTTCAAAGACATTTCACGTTTTCCCCACTTGATTATGGAGCAAAGACTAAC i panTro4.chr5 C 0 I 601 s ponAbe2.chr5 48808304 243 + 183952662 TTTTATCTGCTGCGTATAATTCTAATGATATTTCTCAATTCGTTTATCTTTTAACAATGATAATATATAATGTCTTGCTATTTAGTAAGATTTTTAAAAGTATTTTACATAAACAAA-TTTTATTCTTTGCCATTAATACTTGTAGCTTTGGAATTTTCAGGATCTCCTCAAAAGCCACCTACAGGAAATGCTCTTCAAAGACATTTCACATTTTCCCCATTTGATTATGGAGCAAAGACTAAC i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54726840 244 + 109391073 TTTTATCTGCTGCATATAATTCTAATGATATTTCTCAATTCGTTTATCTTTTAACAATTATTATATATAATGTCTTGCTATTTAGAAAGATTTTTAAAAGTATTTTACATAAACAAATTTTTATTCTTTGCCATTAATACTTGTAGGTTTGGAATTTTCAGGACCTCCTCAAAGGCCACCTACAGGAAATGCTCTTCAAAGACATTTCACTTTTTCCCTACTTGATTATGGAGCAAAGACTAAC i nomLeu3.chr12 C 0 C 0 s rheMac3.chr6 48584366 240 + 180491593 TTTTGTCTGCTGCATATAATTCTAATGATGTTTCTCAATTTGTTTGTCTTTTAACAATGATAATATATAACATCTTGCCATTTAGAAAGatttttaaaaatattttacataaat----ttttattCTTTGCCATTAATATTTGTAGGTTTGGAATTTTCAGGACCTCCTCAAAGGTCACCTACAGGAAATGCTCTTCAAAGACATTTCACTTTTTCCCCACTTGATTATGGAACAGAAACTAAC i rheMac3.chr6 C 0 C 0 s macFas5.chr6 49907230 240 + 181584905 TTTTGTCTGCTGCATATAATTCTAATGATGCTTCTCAATTTGTTTGTCTTTTAACAATGATAATATATAATATCTTGCCATTTAGAAAGATTTTTAAAAATATTTTACATAAAT----TTTTATTCTTTGCCATTAATATTTGTAGGTTTGGAATTTTCAGGACCTCCTCAAAGGTCACCTACAGGAAATGCTCTTCAAAGACATTTCACTTTTTCCCCACTTGATTATGGAACAGAAACTAAC i macFas5.chr6 C 0 C 0 s papAnu2.chr6 46578692 240 + 174439528 ttTTGTCTGCTGCATATAATTCTAATGATGTTTCTcaatttgtttgtcttttaacaatgataatatataatatcttgccatttagaaagattttaaaaaatattttacataaat----ttttattctttgccaTTAATATTTGTAGGTTTGGAATTTTCAGGACCTCCTCAAAGGTCACCTACAGGAAATGCTCTTCAAAgacatttcactttttccccACTTGATTATGGAGCAGAAACTAAC i papAnu2.chr6 C 0 C 0 s chlSab2.chr4 46933588 240 + 91010382 TTTTGTCTGCTACATATAATTCTAATGATGTTTCTCAATTTGTTTGTCTTTTAACAATGATAATATATAATATCTTGCCATTTAGAAAGATTTTTAAAAATATTTTACATAAAT----TTTTATTCTTTGCCATTAATATTTGTAGGTTTGGAATTTTCAGGACCTCCTCAAAGGTCACCTACAGGAAATGCTCTTCAAAGACATTTCACTTTTTCCCCACTTGATTATGGAGCAGAAACTAAC i chlSab2.chr4 C 0 C 0 s calJac3.chr2 47282102 244 - 204313951 TTTTCTCTGCTGCATATAATTCTAATGATATTTCTCAATTCATTTATCTTTTAACAATGAATATGTATAATGTCTTGCTATTTACAGAGatttttaaaaatattttacataaacaaatttttattCTTAGCTATTAATGCCTGTAGGTTTGAAATTTTCAGGACCTCCTCAAAGGCCACCTACAGGAAATGCTCTTCAAAGGCATTTCACTTTTACCCCACTTGATTATGGAGCAAAGACTAAC i calJac3.chr2 C 0 C 0 e canFam3.chr4 23983598 0 - 88276631 C a score=4110327.000000 s hg38.chr1_KI270765v1_alt 112654 1465 + 185285 ACTGGCAATGCTTTGAAGTACTTGAGTCAAATGGGTCTCTCATGTGGTCATT----------ACTATACTCACTCTCAGGCTCCAATGCAAATTGTTT-------------CCTTACGCCAACTACTCTTGCTTTCCTTTAATAGACCTATTCCTCCTGGGCTGTCTGAAACTAACATTTCATTGTAAATAAAGTCCTGCAAATCCTTGGTATCTCAAAGAACCCTCCTTCCATTTAGTTTTAGGAGAACTCTCCTTCTAAAACTCTATTCTTCTCCCTGGAGTCCAGATCCCCATTCCTTGCAACAAATG--AACGCTTGATTTGAGCACTGAAGGGAGATAATTGGAAGTTTGACTTTGTGTTCTAGGTTTTCCCTGCCAATATATGCAGCGTCTTTAAAACTAATTGggctgaggcaggagaactgcttgaacccaggaggaggaggttgcagtgagccgaaattgcaccattgaactccagcctgggtgatagagcaag------------------------------gctccatctcaaaaaaaaaaaaaaa-----aaaacagcaaaaaGAAACTAATTAGGTTCAAGAAGTTCGAATGAATTCAACTTAGACAAGCT----CTTAAGCAGACATGTTGGAAGTTCCAGAAAAGACAGTTTGGGAAAATATTTT-ATTAAAAAAAAAAA-AA----------------------------------AGACTGCCctccacttcctcactcttt---cttcccacttattttcactccactggtgcagtttggtgtcaactctcctcactctactgaaactgctgcagccgaggttactagttatttaattaacaaaagcaatagattttgttttttttaattg-cattatactctactattttgtgacatttaaactattgacaatgtctttcttgaaaatgtgtccttttt-gtttttttcaaaacacgactttctccttgatgtcctcctttttctctcattatttcacctttacattctctgctgacacctttcaccttaccaaaccttaattaaatgtgtatgcttcccagtctcccattcttggctctcttcccttccctc-ttattgatcattattgtattctgtgatctcaccagttctcttggctttaacaataaccagatgactccagaaaactattcaaaattccggacctatggagactttgcacccagatatgtaccaacaactcaacctcagttatctctaatattatctcattaagtgccctctaactacagaatgactcctccttctgggtt--tcctctgcctgaatggcaccaccattcagtggcccatgacaaatttggacctcatttggaacttctccctttccctcatgtttcaTTTTCTCTTGGCTAAAGAGTTATTAGATTCTTCATTTTTAGCTTTTCTCTAGCCTATCTTCAATTT----TATAGTGGACAGTTATGTATATCCTATATCCCAGGAGAGAAGGGATATCTTCTTCTATGCCCATACTATGAACTAGCATATCCTttgagtcctttctttgtatgaa s panTro4.chr5 117734924 1398 - 182651097 ACTGGCAATGCTTTGAAGTACTGGAGTCAAATGGGTCTCTCACATGGTCATT----------ACTATACTCACTCTCAGGCTCCAATGCAAGTTGTTT-------------CCTTAGGCCAACTACTCTTGCTTTCCTTTAATAGACCTATTCCTCctgggctgtctgaaactaacatttcattgtaaataaagtcctgcaaatccttggtatctcaaagaaccctccttccatttagttttaggagaactctcttcctaaaactctattcttctccctggagtcCAGATCCT--------------------AACTCTTGATTTGAGCACTGAAGGGAGATAATTGGAAGTTTGACTTTGTGTTCTAGGTTTTCCCTGCCAATATATGCAGCATCTTTAAAACTAATCaggctgaggcagaagaactgcttgaacccaggaggaggaggttgcagtgagccgaaattgcgccattgaactccagcctgggtgacagagcaag------------------------------gctccacctcaaaaaaaaaaaaaaa-----aaa-cagcaaaaagaaACTAATTAGGTTCAAGAAGTTCGAATGAATTCAACTTAGACAAGCT----CTTAAGCAGACATGTTGGAAGTTTCAAAAAAGACAGTTTGGGaaaatatttttattaaaaaaaaaaa----------------------------------------------------------------------------------CAGTCc-----tgcagttgggtgtcaactctcatcactctactgaaactgctgcagccaaggttactagttatttaattaacaaaagcaatagattttgtttttttaaattgtcattatactgtactattttgtgacatttaaactattgacaa-gtctttctcgaaaatgtgtcctttta-gtttttttcaaaacatgactttctccttgatatcctcctatttctctcattatttcacctttacattctctgctgacacctttcaccttaccaaaccttaattaaatgtgtgtgcttcccagtgtcccattcttggctctcttcccttccctc-ttactgatcattattgtattctgtgatctcactaattctcttggctttaataataaccagatgactccagaaaactattcaaaattccggacctatggagactttgcacccagatatgtaccaacaactcaacctcagttatctctaatattatctcattaagtgccctctaacaatagaatgactcctccttctgggtt--tcctctgcatgaacggcaccaccattcagtggcccacgacaaatgtggacctcatttggaacttctccctttccctcatgtttcaTTTTCTCTTGGCTAAAGAGTTATTAGATTCTTCATTTTTAACTTTTCTCTAGCCTATCTTCAATTT----TATAGTGGACAGTTATGTATACCCTATATCCCAGGAGAGAAGGGATATCTTCTGCTACGCCCCTACTATGAACTAGCATATCCTttgagtcctttctttgtatgaa i panTro4.chr5 I 601 C 0 s ponAbe2.chr5 48808547 1475 + 183952662 ACTGGCAATGCTTTGAAGTACTTGAGTCAAATGGGTCTCTCACGTGGTCATTACTATACTCAACTATACTCACTCTCAGGCTCCAATGCAAGTTGTTT-------------CCTTAGGCCAACTACTCTTGCTTTCCCTTAATAGACCTATTCCTCCTGGGCTGTCTGAAACTAACATTTAATTGTAAATAAAGTCCTGCAAATCCTTGGTATCTCAAAGAACCCTCCTTCCATTTAGTTTTAGGAGAACTCTCCTCCTAAAACTCTA---TTCTCCCTGGAGTCCAGATCCCCATTCCTTGCAACTAATG--AACTCTTGATTTGAGCACTGAAGGGAGATAATTGGAAGTTTGACTTTGTGTTCTAGGTTTTCCCTGCCAATATATGCAGCCTCTTTAAAACTAATCaggctgaggcaggagaactgcttgaacccaggaggaggaggttgcagtgagccgaaattgcgccattgaactccagcctgggtgacagagcaag------------------------------gctccatctcaaaaagaaaaaaaaa-----aaaaCAGCGAAAAGAAACTAATTAGGTTCAAGAAGTTTGAATGAATTCAACTTAGACAAGCTCTTACTTAAGCAGACATGTTGGAAGTTCCAAAAAAGACAGTTTGGGaaaatatttttattaaaaaaaaaaaaaa----------------------------------aGACAGTCctccacttcctcactcttt---cttcccacttattttcactccactgctgcagtttggtgtcaactctcatcactttactgaaactgctgcagccgaggttactagttatttaattaacaaaagcaatagattttgtttttttaaattgtcattatactctaatattttgtgacatttaaactattgacaatgtctttcttgaaaatgtgtcctt-----tttttttcaaaacatgactttctccttgatgtcctcctatttctctcattatttcacctttacattctctgctgacacctttcaccttaccaaaccttaattaaatgtgtgtgcttcccagggtcccattcttggctctcttctcttccctc-tcactgatcattattgtattctgtgatgtcaccaattctcttggctttaacaataaccagatgactccAGAAAACTATGCAAAATTCCGGACCTATGGAGACTTTGCACGCAGATATGTACCAACAACTCAACCTCAGTTATCTCTAATATTATCTCATTAAGTGCCCTCTACCTACAGAATGACTCCTCCTTCTGGGTT--TCCTCTGCCTGAACGGCACCACCATTCAGTGATCCACGACAAATGTGGACCTCATTTGGAACTTCTCCCTTTCCCTTATGTTTCATTTTCTCTTGGCTAAAGAGTTATTAGATTCTTCATTTTTAACTTTTCTCTAGCCTATCTTCAATTT----TGTAGCAGACAGTTATGTATACCCTATATCCCAGGAGAGAAGGGGTATCTTCTGCTACGCCCCTACTATGAACTAGCATATCCTttgagtcctttctttgtatgaa i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54727084 1439 + 109391073 GCTGGCAATGCTTTGAAGTACTTGAGTCAAATGGGTCTCTCACGTGGTCATT----------ACTATACTCACTCTCAGGCTCCAGTGCAAGTTGTTT-------------CCTTAGGCCAACTACTCTTGCTTTCCTTTAATAGACCTATTCCTCctgggctgtctgaaactaacatttcattgtaaataaagtcctgcaaatccttggtatctcaaagaaccctccttccatttagttttaggagaactctcctcctaaaactctattcttctccctggagtcCAGATCCCCATTCCTTGCAACAAATG--AACTCTTGATTTGAGCACTGAAGGGAGATAATTGGAAGTTTGACTTTGTGTTCTAGGTTTTCCCTGCCAATATATGCAGCATCTCTAAaactaatcgggctgaggagggagaactgcttgaaccc---aggaggaggttgcagtgagccaaaattgcaccattgaactccagcctgggtgacagagcaag------------------------------gctccatctcaaaaaaaa----------------cagcaaaaagaaaCTAATTAGGTTCAAGAAGTTCGAATGAATTCAACTTAGACAAGCT----CTTAAGCAGACATGTTGGAAGTTCCAAAAAAGACAGTTTGGGAAAATATTTTTATTAAAAAAAGAAA--------------------------------------GActgtcctccacttcctcactcttt---cttcccacttattttcactccactgctacagtttggtgtcaactcttatcactctactgaaattgctgcagccgaggttactagttatttaattaacaaaagcaatagattttgtttttttacattgtcattatactctactattttgtgacatttaaactattgacaatgtctttcttgaaaatgtgtcctc-------------aaaacacaactttctccttgatgtccttctatttctctcattatttcacctttacattctctgctgacacctttcaccttaccaaaccttaattaaatgtgtgggcttcccagtgccccattcttggctctcttcccttccctctttactgatcattattgtgttctgtgatctcaccaattctcttggctttaacaataaccagatgactccagaaaactattcaaaattccggacctgtgaagactttgcacccagatatgtaccaacaactcaacctcagttatctctaatattatctcattaagtgccctctaactacagaatgactcctccttctgggtt--tcctctgcctgaatggcaccaccattcagtggcccacgacaaatttggacctcatttggaacttctccctttccctcatgtttcaTTTTCTCTTGGCTAAAGAGTTATTAGATTCTTCATTTTTAACTTTTCTCTAGCCTATCTTCAATTT----TATAGTGGACAGTTATGTATACCCTATATCCCAGGAGAGCAGGAATATCTTCTTCTATGCCCCTACTATgaactagcatatcctttgagtcctttctttgtatgaa i nomLeu3.chr12 C 0 I 305 s rheMac3.chr6 48584606 1486 + 180491593 ACTGGCAATGCTTTGAAGTACTTGAGTCAAATGGGTCTCTCACATGGTCATT----------ACTATATTTAATTTCAGGCTCCAATGCAAGTTGTTT-------------CCTTTGGCCAACTACTCTTGCTTTCCTTTAATAGACCTATTTCTCCTGGCCTGTCTGAAACTAACATTCCACTGTAAATAAAATCTTGCAAATCCTTGGTATCTCAAAGAACCCTCTTTCTA-TTAGTTTTACGAGAACTCTCCTCCTAAAACTCTATTCTTCTCCCTGGAGTCCAGATTCCCATTCCTTGCAGCAAATG--AACTGTTGATTTGAGCACTGAAGGGAGATAACTGGAATTTTGACTTTGTGTTTTAGGTTTTCCCTGCCAATATATGCAGCGTCTTTAGACTTAATTGggctgaggcaggagaactgcttgaagccgggaggtggaggctgcagtgagccaagat----------------------------------ggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncccatctcagaaaaaaaaaaaa------aaaacaacaaaaagaaACTAATTAGGTTCAAGAAGTACGAATGAATTCAACTTAGACAAGCT----CTTAAGCAGACATGTTGGAAGTTCCAAAAAAGACAGCTTTGGAAAATATTTTTATtaaaaaataaataag------------taaataaataaataaataaataaGActgtcctccacttcctcactcttcttgcctcccacttattttcactccactgctgcagtttggtgtaaactctcattactctactgaaactgctgcagccgaggttactagttatttaattaacacaagcaatagattttgtttttttaaattgtcattatactctactattttgtgacatttaaactattgacaaagtctttcttgaaaatgtatccttttt-gtttttttcaaaacatgactttctccttgatgtcctcctatttctctcattatttcacctttacattctctgctgacacctttcaccttaccaaaccttaattaagtgtgtgtgcttcccagtgtcccattcttgcctctcttcccttccctc-ttattgatcattattttattctgtgatctcaccaattctcttggctttaacaataaccagatgactccagaaaactattcaaaattccagacttatggagactttgcacctagatatgtaccaacaactcaacctcagttatctctaatattatctcaTTAAGTGCTCTCTAACTACAGAATGACTCCTCCTTCTGGGTT--TCCTCTGCCTGAGCAGCAACACCACTCAGTGG-CCATGACAAATGTGGACCTCATTTGGAGCTTCTCCTTTTCCCTCATGTTTCATTTTCTCTTGGCTAAAGAGTTATTAGATTCTTCATTTTTAACTTTTCTCTAGTCTATCTTCAATTT----TGTAGTGGTCAGTTACGTATACCCTATATTCCAGAAGAGGAGGGATATCTTCTTCTATGCCCCTACTGTGAACTAGCATATCCTttgagtcctttctttgtatgaa i rheMac3.chr6 C 0 C 0 s macFas5.chr6 49907470 1492 + 181584905 ACTGGCAATGCTTTGAAGTACTTGAGTCAAATGGGTCTCTCACATGGTCATT----------ACCATATTTAATTTCAGGCTCCAATGCAAGTTGTTT-------------CCTTTGGCCAACTACTCTTGCTTTCCTTTAATAAACCTATTTCTCCTGGCCTGTCTGAAACTAACATTTCACTGTAAATAAAATCTTGCAAATCCTTGGTATCTCAAAGAACCCTCTTTCTA-TTAGTTTTACGAGAACTCTCCTCCTAAAACTCTATTCTTCTCCCTGGAGTCCAGATTCCCATTCCTTGCAGCAAATG--AACTGTTGATTTGAGCACTGAAGGGAGATAACTGGAATTTTGACTTTGTGTTTTAGGTTTTCCCTGCCAATATATGCAGCGTCTTTAGACTTAATTGggctgaggcaggagaactgcttgaacccagaaggaggaggttgcagtaagccaaaattgcgccattgaactccagcctgggtgagagagcaag------------------------------actccatctcagaaaaaaaaaaaaac----aaaacaacaaaaaGAAACTAATTAGGTTCAAGAAGTACGAATGAATTCAACTTAGACAAGCT----CTTAAGCAGACATGTTGGAAGTTCCAAAAAAGACAGCTTTGGAAAATATTTTTATtaaaaaataaataag------------taaataaataaataaataaataagactgtcctccacttcctcactcttcttgcctcccacttattttcactccactgctgcagtttggtgtaaactctcattactctactgaaactgctgcagccgaggttactagttatttaattaacacaagcaatagattttgtttttttaaattgtcattatactctactattttgtgacatttaaactattgacaaagtctttcttgaaaatgtatccttttt-gtttttttcaaaacatgactttctccttgatgtcctcctatttctctcattatttcacctttacattctctgctgacacctttcaccttaccaaaccttaattaagtgtgtgtgcttcccagtgtcccattcttgcctctcttcccttccctc-ttattgatcattattttattctgtgatctcaccaattctcttggctttaacaataaccagatgactccAGAAAACTATTCAAAATTCCAGACTTATGGAGACTTTGCACCTAGATATGTACCAACAACTCAACCTCAGTTATCTCTAATATTATCTCATTAAGTGCTCTCTAACTACAGAATGACTCCTCCTTCTGGGTT--TCCTCTGCCTGAGCAGCAACACCACTCAGTGG-CCATGACAAATGTGGACCTCATTTGGAGCTTCTCCTTTTCCCTCATGTTTCATTTTCTCTTGGCTAAAGAGTTATTAGATTCTTCATTTTTAACTTTTCTCTAGTCTATCTTCAATTT----TGTAGTGGTCAGTTACGTACACCCTATATTCCAGAAGAGGAGGGATATCTTCTTCTATGCCCCTACTGTGAACTAGCATATCCTttgagtcctttctttgtatgaa i macFas5.chr6 C 0 C 0 s papAnu2.chr6 46578932 1507 + 174439528 ACTGGCAATGCTTTGAAGTGCTGGAGTCAAATGGGTCTCTCACATGGTCATT----------ACTATACTTAATTTCAGGCTCCAATGCAAGTTGTTT-------------CCTTAGGCCAACTACTCTTGCTTTCCTTTAATAGACCTATTTCTCCTGGCCTGTCTGAAACTAACATTTCATTGTAAATAAAATCTTGCAAATCCTTGGTATCTCAAAGAACCCTCTTTCTA-TTAGTTTTAGGAGAACTCTCCTCCTAAAACTCTATTCTTCTCCCTGGAGTCCAGATTCCCATTCCTTGCAACAAATG--AACTGTTGATTTGAGCACTGAAGGGAGATAACTGGAATTTTGACTTTGTGTTTTAGGTTTTCCCTGCCAATATATGCAGCGTCTTTAAAATTAattgggctgaggcaggagaactgcttgaacccagaaggaggaggttgcagtaagccaaaattgtgccattgaactccagcctgggtgagagagcaag------------------------------actccatctcaggaaaaaaaaaaaaccacaacaaaaagaaaaagaaactaattaGGTTCAAGAAGTACGAATGAATTCAACTTAGACAAGCT----CTTAAGCAGACATGTTGGAAGTTCCaaaaaagacagttttggaaaatatttttattaaaaaataaataagtaaataaataaataaataaataaataaataaataagactgtCCTCTACTTCCTCACTCTTCTTGCCTCCCACTTATTTTCACTCCACTGCTGCAGTTTGGTGTAAACTCTCATTACTCTACTGAAACTGCTGCAGCCGAGGTTACTAGTTATTTAATTAACACAAgcaatagattttgtttttttaaattgccattatACTCTACTATTTTGTGACATTTAAACTATTGACAAAGCCTTTCTTGAAAAtgtatccttttt-gtttttttcaaaacatGACTTTCTCCTTGATGTCCTCCTATTTCTCTCATTATTTCACCTTTACATTCTCTGCTGACACCTTTCACCTTACCAAACCTTAATTAAGTGTGTGTGCTTCCCAGTGTCCCATTCttgcctctcttcccttccctc-ttatTGATCACTATTTTATTCTGTGATCTCACCAATTCTCTTGGCTTTAACAATAACCAGATGACTCCAGAAAACTATTCAAAATTCCAGACTTATGGAGACTTTGCACCTAGATATGTACCAACAACTCAACCTCAGTTATATCTAATATTATCTCATTAAGTGCTCTCTAACTACAGAATGACTCCTCCTTCTGGGTT--TCCTCTGCCTGAGCAGCAACACCACTCAGTGG-CCATGACAAATGTGGACCTCATTTGGAGCTTCTCCTTTTCCCtcatgtttcattttctcttggcTAAAGAGTTATTAGattcttcatttttaac-tttctctAGTCTATCTTCAATTT----TGTAGTGGTCAGTTACGTATACCCTATATTCCAGAAGAGGAGGGATATCTTCTTCTATGCCCCTACTGTGAACTAGCATATCCTTTGAGTCCTTTCTTTGTATGAA i papAnu2.chr6 C 0 C 0 s chlSab2.chr4 46933828 1481 + 91010382 ACTGGCAATGCTTTGAAGTACTTGAGTCAAATGGGTCTCTCACATGGTCATT----------ACTATACTTAATTTCAGGCTCCAATGCAAGTTGTTT-------------CCTTAGGCCAACTACTCTTGCTTTCCTTTAATAGACCTATTTCTCCTGGCCTGTCTGAAACTAACATTTCATTATAAATAAAATCTTGCAAATCCTTGGTATCTCAAAGAACCCTCTTTCTA-TTAGTTTTAGGAGAACTCTCCTCCTAAAACTCTATTCTTCTCCCCGGAGTCCAGATTCCCATTCCTTGCAACAAATG--AACTGTTGATTTGAGCACTGAAGGGAGATAACTGGAATTTTGACTTTGCGTTTTAGGTTTTCCCTGCCAATATATGCAGCGTCTTTAAAATTAATTGggctgaggcagaagaactagg-------aggaggaggaggttgcagtaagccaaaattgcgccattgaactccaacctgggtgagagagcaag------------------------------actccatcaaaaaaaaaaaaaaaaaaa---aaaacaacaaaaaGAAACTAATTAGGTTCAAGAAGTACGAATGAATTCAACTTAGACAAGCT----CTTACGCAGACATGTTGGAAGTTCCAGAAAAGACACTTTTGGAAAATATTTTTATtaaaaaataaataag----------------taaataaataaataaataagactgtcctccacttcctcactcttcttgcctcccacttattttcactccactgctgcagtttggtgtaaactctcatcgctctactgcaactgctgcagccgagattactagttatttaattaacacaagcaaaagattttatttttttaaattgtcattatactctactgttttgtgacatttaaactattgacaatgtctttcttgaaaatgtctccttttt-gttttttt-aaaacatgactttctccttgatgtcctcctatttctctcattatttcacctttacattctctgctgacacctttcaccttaccaaaccttaattaagtgtgcgtgcttcccagtgtcccattcttgcctctcgtcccttccctc-ttgttgatcattattttattctgtgatctcaccaattctcttgactttaacaataaccagatgactccAGAAAACTATTCAAAATTCCAAACCTATGGAGACTTTGCACCTAGATATGTACCAACAACTCAACCTCAGTTATCTCTAGTATTATCTCATTAAGTGCTCTCTAACTACAGAATGACTCCTCCTTCTGGGTT--TCCTCTGCCTGAGCAGCAACACTACTCAGTGG-CCATGACAAATGTGGACCTCATTTGGAGCTTCTCCTTTTCCCTCATGTTTCATTTTCTCTTGGCTAAAGAGTTATTAGATTCTTCATTTTTAACTTTTCTCTAGTCTATCTTCAATTT----TGTAGTGGTCAGTTACGTATACCCTATATTCCAGAAGAGGAGGGATATCTTCTTCTATGCCCCTACTGTGAACTAGCATATCCTttgagtcctttctttgtatgaa i chlSab2.chr4 C 0 C 0 s calJac3.chr2 47282346 1460 - 204313951 ACTGGCGATGCTTTGAACTGTTTGAGTCAAAGGAGTCTTTCACTTGGTCTTT----------ACTATACTTACTCTCAAGCTCCAACACAAGTTGTTTCCTTTGTGTTTTACCTTAGGCCAACTACTCTTGTTTTCCTTGAATAGACCTattcttcctgggctctctgaagctaacatttcactgtaaataaagtcctgcgagtccttggtatctcaaagaaccctccttcca-tttgctt---------gccttaactaaaactctattcttctcCCTGGAGTCCAGATCCCCAGTGCTTGCAACATATGAAAACTGTTGATTTGAGCACTGAAGGGAGATAATTGGAAGTTTGAGTTTGTGTTCTAGGTTTTCTCTGCCAATATATGCAGTGTCTTTAAaactaatcgggctggggcaggagaattgcttgaacccaagaggaagaggttgctgtgagccaagattgcgccactgaactccagcctgagtgacagagcaag------------------------------actccatctcaagtaaaat-----------aaaataaaataaaataaCTAGTTGGGTTCAAGAAGTTTGATTGAATTCAACTTAGACAAGCT----CTTA-GCAGACATGTTGGAAATTCCAAAAAAGATAGTTTT-Gaaaatatttttatttaaaaaaa----------------------------------------aGActgtcctccacttccccactcttg---cctcccaattattttcactctatggctgcagtttgttgtcgactctcatcactcttatgaaactgctgcagctgag-ttgctacttatttaattaacaaaagcaatagatttgggtttttt-aattgtcattatactctactattctgtgacatttaaactattgacaatgtctttcttaaaaatgcatcctttttggttttttgcaaaacatgactttctccttgatgccctccta-ttctctcattacttcacctttacattctctgatgac-cctttcatcttaacaaacgttaattaaatatgtgcgcttcccgttgtcccattcttggctctcttcccttctgtc-ttattgatcattattgtattttgtgatctcaccaattctcttggctttaacaataaccagatgactccagaaaactattctaaattccagccctatggagactttgcacccaggtatgtaccggcaactcaacctcaattatctctaatattatctcattaagt-ccccctaattacggaacaactcttccttccgggtttctcctctgcttgaatggcaccactactcagtggcccaccacaaatgtggacctcatttggaacttttccttttccctcacgtttcatttcctatTGGTTAAAGAGTTATTAGATTCTTCATTTTTAACTTTTCTCTGGTTTATTTTCAATTTTAGATATAGTGGCCAGATATGTATATTCTATAT-CCAGGAGAGAAGGGATATCTTCTTCTATGCCCTTGCTGTGaactagcatatccttagagtcctttctttgtatgaa i calJac3.chr2 C 0 C 0 e canFam3.chr4 23983598 0 - 88276631 C a score=2203669.000000 s hg38.chr1_KI270765v1_alt 114119 790 + 185285 gcactggggaaatttaatcaacttcataatcacttataatcctcacagtaattttatgagataagttctatttattatccctatcttaaggatgaggaaactgtggtttaaagagcttaagtaatttgggcaaatcatgaaagaagcagtgaagacagaattcaaatctaggcaacctgaaatctgagcctgagcactttgcctccctaataactatctccctTTGAGAGTTGTATTACAAAGTTGACAACATTTAGCAACCCTTATT-CCCCTCCCCACCCCTATCTCTCTCCAAGAAATCTGCTGTGAGGTAGAGAATGTGTTGATTTTCTCTGCAGTTTTTAGTGCATAGCATAGGGCTTAGAAAGGAGAAAATGATGAAAAATATTTATTAAAATAATTGTTTTTCTTTGATAGTTGTTATAACCATCGAATTGTGAGTGCTTAACAATTACTATAAAGGAGAATGGAAATCACAGATCTTTTCAC----------------AGAAtttttttt--------------ttttt-----------ttttttttgagacagagtccagct-tgtcacccaggctggagtgcagtggtgcgatctcagctcactgcaacctccacctcctgggtttaatcacttgccttggcctcctgagtagctgagattacaggtgtgcaccaccatgcctggctaatttttgtatttttggtagagatggggtttcaccacattggccaggctggtctcaaactcctgacctccagtgatccacccatctcagactcccaaagagctgggattataggcttgaaccaccgtgctgggcc s panTro4.chr5 117736322 805 - 182651097 gcactggggaaatttaatcaacttcataatcacttacaatcctcatggcaattttatgagataagttctatttattatccctatcttaaggatgaggaaactgtggtttaaagagcttaagtaatttgggaaaatcataaaagaagcagtgaagacagaattcaaatctaggcaacctgaaatctgagcctgagcactttgccacCCTAATAACTATCTCCCTTTGAGAGTTGTATTACAATGTTGACAACATTTAGCAACCCTTATT-CCCCTCCTCACCCCCATCTCTCTCCAAGAAATCTGCTGTGAGGTAGAGAATGTGTTGATTTCCTCTGCAGTTTTTAGTGCATAGTGTAGGGCTTAGAAAGGAGAAAATGATGAAAAATGTTTACTGAAATAATTGTTTTTCCTTGATAGTTGTTATAACCATCTAATTGTGAGTGCTTAACAATTACGATAAAGGAGAATGGAAATCACAGATCTTTTCAC----------------AGAATTtttttttttgtttttttttgttttt-----------tgttttttgagacagagtctagctctgtcacccaggctggagtgcagtggtgcgatctcagctcactgcaacctccacctcctgggtttaatcactcgccttggcctcctgagtagctgagattacaggcgggcatcaccatgcctggctaatttttgtatttttggtagagatggggtttcaccacattggccaggctggtctcaaactcctgacctcccgtgatccacccatcttagcctcccaaactgctgggattacaggcttgagccaccgtgccaggcc i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48810022 777 + 183952662 gcactggggaaatttaatcaacttcgtaatcacttacaatcctcatagcaatttt-----ataagttctatttatcatccttatcttaaggatgaggaaactgtggtttaaagagcttaagtaatttgggaaaatcataaaagaagcagtgaagacagaattcaaatctaggcaacctgaaatctgagcctgagcacttTGCCTCCCTAATAACTATCTCCCTTTGAGAGTTGTATTACAATGTTGACAACATTTAGCAACCCTTATT-CCCCTCCCCAACCCCATCTCTTTCCAAGAAATCTGCTGTGAGGTAGAGAATGTGTTGATTTCCTCTGCAGTTTGTAGTGCATATCCTAGGGCTTAGAAAGGAGAAAATGATGAAAAATGTTTACTAAAATAATTGTTTTTCTTTGATAGTTGTTATAACCATCTAATTGTGAGTGCTTAACAATTACTATAAAGGAGAATGGAAATCACAGATCTTTTCAA----------------AGAAtttttttt----------------------------------ttttgagacagagtctagctctgtcacccaggctggagtgcagtggtgcgatctcagctcactgcaacctccatctcctgggtttaatcacttgccttggcctcctgagtagctgagattacaggcatggatcaccatgcctggctaatttttgtatttttggtagagatggggtttcaccacattggccaggctggtctcaaactcctgacctccagtgatccacccatctcagcctcccaaagtgctgggattacaggtttgagccaccgcgccgggcc i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54728828 775 + 109391073 gcactggggaaatttaatcaacttcataatcacttgtaatcctcatagcgattttatgagataagttctatttattatccctatcttaaggatgaggaaactgtggtttaaagagcttaagtaatttgggcaaatcataaaagaagtagtgaagacagaattcaaatctagacaacctgaaatctaagcctgagcactttGCCTCCCTAATAA--------CTTCGAGAGTTATATTACTAAGTTGACAACATTTAGCAACCCTTATT-CCCCTCCCCACCCCCATCTCTTTCCAAGAAATCTGCTGTGAGGTAGAGAATGTGTTGATTTCCTCTGCAGTTTTTAATGCATAGCGTAGGGCTTAGAAAGGAGAAAATGATGAAAAACATTTACTAAAATAATTGTTTTTCTTTGATAGTTGTTATAACCATCTAATTGTGAGTGCTTAACAATTACTATAAAGGAGAATGGAAATCACAGATCTTTTCAC----------------AGAAtttttttt------------------------------ttttttttgagacagagtctagctctgtcacccaggctggagtgcagttgtgcgatctcagctcactgcaacttccacctcctgggtttaatcacttgccttggccttctgagtagctgagattacaggtgtgcaccaccatgccgggctaatttttgtatttttggtagagatggggttt---cacattgactaggctggtctcaaactcctaacctccagtgatccacccatctcagactcccaaagtgctgggattacaggcttgagccaccgcactaggcc i nomLeu3.chr12 I 305 C 0 s rheMac3.chr6 48586092 773 + 180491593 gcactggggaaatttaatcaacttcataatcacttataaccctcataacaattttatgagataagttctatttattattcctagcttaagaatgaggaaactgtggtttaaagagcttaagtaatttgggcaaatcataaaagaagcaatgaagatagaattcaaatctaggtaacctgaaatctgagcctgagtactttgcctccccagtaactatctcCCTTTGAGAGTTATATTACAACGTTGACAACATTTAGCAACCCTAATTCCCCCCCCT---CCCCATCTCTCTCCAAGAAATCTGCTGTGAGGTAGAGAACGTGTTGATTTCCTCTGCAGTTTTTAGTGCATCACATAGGGCTTAGAAAGGAGAAAATGATGAAAAATATTTACTAAAAGAATTGTTTTCCTTTGATAGTTGTTATAACCATCTAATTGTGAGTGCTTAAAAATTACTCTAAGGGAGAATGGAAGTCACAGATCTTTTCTC----------------AGAAtttttttt--------------ttttt-------------------gagac--agtctagttctgtcacccaggctggagtgcagtggtgcaatctcagctcactgcaacctccacctcttgggtttaattacttgcctcggcctcctgagtagctgagattacaggcgtgtaccaccatgcctggctaatttttgtgtttttggtagagatgtggtttcaccacattagccagg------tcagagtcctttcctccagtgatccacccatccccgcctcctaaagtgctgggattacaggcttaagccaccatgccgggcc i rheMac3.chr6 C 0 C 0 s macFas5.chr6 49908962 781 + 181584905 gcactggggaaatttaatcaacttcataatcacttataatcctcataacaattttatgagataagttctatttattatccctagcttaaggatgaggaaactgtggtttaaagagcttaagtaatttgggcaaatcataaaagaagcaatgaagatagaattcaaatctaggtaacctgaaatctgagcctgagtactttgcctccccagtaactatctcCCTTTGAGAGTTATATTACAACGTTGACAACATTTAGCAACCCTAATT-CCCCCCCT---CCCCATCTCTCTCCAAGAAATCTGCTGTGAGGTAGAGAACGTGTTGATTTCCTCTGCAGTTTTTAGTGCATCACATAGGGCTTAGAAAGGAGAAAATGATGAAAAATATTTACTAAAAGAATTGTTTTCCTTTGATAGTTGTTATAACCATCTAATTGTGAGTGCTTAACAATTACTCTAAGGGAGAATGGAAGTCACAGATCTTTTCTC----------------AGAAtttttttt--------------ttttt----------ttttttttggagac--agtctagttctgtcacccaggctggagtgcagtggtgcaatctcagctcactgcaacctccacctcttgggtttaattacttgcctcggcctcctgagtagctgagattacaggcgtgcaccaccatgcctggctaatttttgtgtttttggtagagatgtggtttcaccacattagccagg------tcagactcctgacctccagtgatccacccatcccagcctcctaaagtgctgggattacaggcttaagccaccatgccgggcc i macFas5.chr6 C 0 C 0 s papAnu2.chr6 46580439 781 + 174439528 GCACTGGGGAAATTTAATCAACTTCATAATCACTTATAATCCTCATAACAATTTTATGAGATAAGTTCTATTTATTATCCCTAGCTTaaggatgaggaaactgtggtTTAAAGAGCTTAAGTAATTTGGGCAAATCATAAAAGAAGCAATGAAGATAGAATTCAAATCTAGGTAACCTGAAATCCGAGTCTGAGTACTTTGCCTCCCCAGTAACTATCTCCCTTTGAGAGTTATATTACAACGTTGACAATATTTAGCAACCCTAATT-ccccccct---ccccatctctctccaaGAAATCTGCTGTGAGGTAGAGAACATGTTGATTTCCTCTGCAGCTTTTAGTGCATCACGTAGGGcttagaaaggagaaaatgatgaaaaatatttactaaaagaaTTGTTTTCCTTTGATAGTTGTTATAACCATGTAATTGTGAGTGCTTAACAATTACTCTAAGGGAGAATGGAAGTCACAGATcttttctc----------------agaatttttttt--------------ttttt----------ttttttttttgaac--agtctagttctgtcacccaggctggagtgcagtggtgcaatctcagctcactgcaacctccacctcttgggtttaattacttgcctcggcctcctgagtagctgaaattacaggcatgcaccaccatgcctggctaatttttgtgtttttggtagagatgtggtttcaccacattagccagg------tcagactcctgacctccagtgatccacccatcccagcctcctaaagtgctgggattacaggcttaagccaccatgccgggcc i papAnu2.chr6 C 0 C 0 s chlSab2.chr4 46935309 791 + 91010382 gcactggggaaatttaatcaacttcataatcacttataatcctcataacaattttatgagataagttctatttattatccctagcttaaggatgaggaaactgtggtttaaagagcttaagtaatttgggcaaatcataaaagaagcaatgaagatagaattcaaatctaggtaacctgaaatctgagcctgagtactttgccttcccagtaactatctccctTTGAGAGTTACATTACAACGTTGACAACATTTAGCAACCCTAATT-CCTCCCCT---TCCCATCTCTCTCCAAGAAATCTACTGTGAGGCAGAGAACGTGTTGATTTCCTCTGCAGCTTTTAGTGCATCACGTAGGGCTTAGAAAGGAGAAAATGATGAAAAATATTTACTAAAAGAATTGTTTTCCTTTGATAGTTGTTATAACCATCTAATTGTGAGTGCTTAACAATTACTCTAAGGGAGAATGGAAGTCACAGATCTTTTCTC----------------AGAAtttttttt--------------ttttttttttttttttttttttttttGAC--agtctagctatgtcacccaggctggagtgcagtggtgcgatctcagctcactgcaacctccacttcttgggtttaattacttgcctcggcctcctgagtagctgagattacaggcgtgcaccaccatgcctggctaatttttgtgtttttggtagagatgttgtttcaccacattagccagg------tcagactcctgacctccagtgatccacccatcccagcctcctaaagtgctgggattacaggcttaagccaccatgccgggcc i chlSab2.chr4 C 0 T 11736 s calJac3.chr2 47283806 783 - 204313951 gcactggggaaatttaatc-acctcataatcacttttaatcctcatatcaattttaagacataggttctgtttattttccctgtcttaaggatgaggaaactgtggtgtaaagagctttagtaatatgggtaaatcataaaagaagcagtgaggacagaattcaaatctaggcaacctgaaatctgagcctgagcactttgcctccccagtaactatctcCCATTG-GAGTTGTGTTACAATGTTGACAGCATTTAGCAACCCTTATT-TTTTTCCA------CATCTCTGTCTAAGAAATCTGCTGTGAGGTAGAGAATATGTTGATTTTCTTTGCAGTTTTTAGTGCGTAGCATGGGGCTTAGAAAGGAGAAA---ATGAAAAATATTTACTAAAAGAATTGTTTTTCTGTGATAGTTGTTATAACCATCTAATTGTGAGTGCTTAACAATTACTATAAAGGAGAATGGAAATC-----TCTTTTCCAACAATTACTATAAGGGAGAAtttctttt--------------ttttt------tttttttttttttgtgacagattctagctctgtcacccaggctggagtgcagtggtgcaatctcagctcactgcaacctctgcctcctgggttcagtggcttgcctcagcctcctgagta---gaaattacaggcatgt-cccccatgcctgggtagtttttgtatttttggtagagatggggtttcagaacattggccagg-ctgtctcaaaatcctgacctccagtgatccacctgcctcagcctcccaaagtgctggga--------ttgaaccgccatgtccagcc i calJac3.chr2 C 0 C 0 e canFam3.chr4 23983598 0 - 88276631 C a score=406204.000000 s hg38.chr1_KI270765v1_alt 114909 171 + 185285 TTTCTTAGAGAATTTATAGTTTACCTGGAAATGTAAACTATATATATACTTAAACTGAGGGATATTTACAAAAGAGCTTTCTACTTAACCCACAAGAAGCTGTATTAATAACAAAGCAAATCAAGCTTGTTCACAGGCAACTGAATAGAATGAATGGTTTTGATTGGTGTT s panTro4.chr5 117737127 169 - 182651097 TTTCTCAGAGAATTTATAGTTTACTTGGAAATGTAAAC--TATATATACTTAAACTGAGGGATATTTACAAAAGAACTTTCTGCTTAACCCCCAAGAAGCTGTATTAATAACAAAGCAAATCAAGCTTGTTCACAGGCAACTGAATGGAATGAATGGTTTTGATTGACCTT i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48810799 169 + 183952662 TTTCTCAGAGAATTTATAGTTTACTTGGAAATGTAAAC--TATGTATACTTAAACTGAGGGATATTTACAAAAGAACTTTCTACTTAACCCCCAAGAAGCTGTATTAATAACAAAGCAAATCAAGCTTGTTCACAGGCAACTGAATGGAATGAATGGTTTTGATTGGCCTT i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54729603 169 + 109391073 TTTCTCAGAGAATTTATAGTTTACTTGGAAATGTAAAC--TATATATACTTAAACTGAGGGATATTTACAAAAGAGCTTCCTACTTAACCCCCAAGAAGCTGTATTAATAACAAAGCAAATCAAGCTTGTTCACAGGCAACTGAATGGAATGAATGGTTTTGATTGGCCTT i nomLeu3.chr12 C 0 C 0 s rheMac3.chr6 48586865 169 + 180491593 TTTCTCAGAGAATTTATAGTTTACTTGGAAATGTAAAC--TATATATACTTAAACTGAGGGATATTTACAAAACAACTTTCTACTTAACCCCCCAAAAGCCATATTAATAACAAAGCAAATCAAGCTTGTTCACAGGCAACTGAATGGAATGAATGGTTTTGGTTGGCCTT i rheMac3.chr6 C 0 I 238 s macFas5.chr6 49909743 169 + 181584905 TTTCTCAGAGAATTTATAGTTTACTTGGAAATGTAAAC--TATATATACTTAAACTGAGGGATATTTACAAAACAACTTTCTACTTAACCCCCAAAAAGCCATATTAATAACAAAGCAAATCAAGCTTGTTCACAGGCAACTGAATGGAATGAATGGTTTTGGTTGGCCTT i macFas5.chr6 C 0 I 245 s papAnu2.chr6 46581220 169 + 174439528 tttCTCAGAGAATTTATAGTTTACTTGGAAATGTAAAC--TATATATACTTAAACTGAGGGATATTTACAAAACAACTTTCTACTTAACCCCCAAAAAGCCGTATTAATAACAAAGCAAATCAAGCTTGTTCACAGGCAACTGAATGGAATGAATGGTTTTGGTTGGCCTt i papAnu2.chr6 C 0 I 246 s calJac3.chr2 47284589 169 - 204313951 TTTCTCAGAGAATTTATAGTTTACTTGGAAATGTGAAC--TATATATACTTAAACTGAGGGGTATTTACAAAACAATTTTCTACTTTTCCCTTAAGAAGCTGTATTAATAATAAAGCAAATCAAGTTTGTTCACAGGCAACTGAATGGAATGAATGGCTTCGGTTGGCCTT i calJac3.chr2 C 0 C 0 e chlSab2.chr4 46936100 11736 + 91010382 T e canFam3.chr4 23983598 0 - 88276631 C a score=5600.000000 s hg38.chr1_KI270765v1_alt 115080 2 + 185285 GC s panTro4.chr5 117737296 2 - 182651097 GC i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48810968 2 + 183952662 GC i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54729772 2 + 109391073 GC i nomLeu3.chr12 C 0 C 0 s rheMac3.chr6 48587272 2 + 180491593 GC i rheMac3.chr6 I 238 C 0 s macFas5.chr6 49910157 2 + 181584905 GC i macFas5.chr6 I 245 C 0 s papAnu2.chr6 46581635 2 + 174439528 gc i papAnu2.chr6 I 246 C 0 s calJac3.chr2 47284758 2 - 204313951 GC i calJac3.chr2 C 0 C 0 e chlSab2.chr4 46936100 11736 + 91010382 T e canFam3.chr4 23983598 0 - 88276631 C a score=2735081.000000 s hg38.chr1_KI270765v1_alt 115082 959 + 185285 CAGTTAT------------------------------------------------------ATTTCTAACAAGAGAAAATTCAATGTGAGCCTC--ATTTGGAAACAAGATATTACAGAGAGGAAAATTTGGGATTAAGGTCAGATTTGGTGCAACTATGCTAGATACAGAAAAGGCAAACTTTCAGCTCAATCCCCAGCTAAGTACAAGTTCAATGGTGAAGGCATAAGAAAATGAGCCATTATAA-TAAGtctgaaataagtttatgattccacctcaatatgggcatgcaatatattctaacatttaatccctggaaaaaatgatgacatcacactgaaatcttgactcataagagaactTTTTTATGCTGTTCCCTAAGTCAGTTTATTTCTACTTCATTCTTGCGTTAAGGGTAGGCTCAATTCTTACTCATTCAAAAACGGTA-TCACCTGAAGCTTTTCTTTAATTCTTGTTTTCTCTGCAGTGAGAAAATTAATCAAGGGGTTAAAatgtatattaaattatatatgtattatatgtaaaagttatataatatagatcagagaagaatatattgcatatgttataggctgaattgtgtccttt-ccccaaattaatatgctgtaccctgccccctgccatcccggtatatcagaaggtggctatatttggagatagagacttttaagaggtaactaatgtaaaatgaggtcacatgtctgggtcctaatccaatatcactggtgtccttatttgaagaggaaatttaggtacagacata-catgtgcacagaaaaaagtccatgagaagacaagatgagaaaatgactatctaaaagccaaggagagaaatttcagaataaaattaacacatctgatgccttgagctcacacttctagcctccagaaccgtgagaaaataaatttctgttgtttaactcacccagtctgcagtaattgttataacaaccctagcaaagtaatataGGAAGtatatatatatatatatatat s panTro4.chr5 117737298 952 - 182651097 CAGTTAT------------------------------------------------------ATTTCTAACAAGAGAAAATTCAATGCGAGCCTCAGATTTGGAAACAAGATATTACAGACAGGAAAATTTAGGATTAAGGTCAGATTTGGTGCAACTATGCCAGATACAGAAAAGGCAAATTTTCAGCTCAATCCCCAGCTAAGTACAAGTTCAGCGGCGAAGGCATGAGAAAATGAGCCATTATAA-TAAGTCTGAAATAAGTTTATGATTCCACTTCAATATGGGCATGCAATATATTCTAACATTTAATCCCTGGAAAAAATGATGACATCACACTGAAATCTTGACTCATAAGAGAACTTTTTTATGCTGTTCCCTAAGTCAGTTTATTTCTACTTCATTCTTGTGTTAAGGGCAGGCTCAATTCTCACTCATTCAAAAACGATA-TCACCTGAAGCTTTTCTTTAAGTCTTGTTTTCTCTGCGGTGAGAAAATTAATCAAGGGGttaaaatgtatattaaattatatatgtattatatataaaaGTTATGTAATATAGATCAGGGAAGAATATATTGCATAtgttataggctgaattgtgtcctttcccccaaattcatatgctgtaccctgccccctgccacctcagtatatcagaaggtggctatatttggagatagagactttcaagaggtaactaatgtaaaacgaggtctcatgtgtgggtcctaatccaatatcactggtgtccttgtttgaagaggaaatttaggtacagacata-catgtgcacagaaaaaagaccatgagaagacaacatgagaaaatgactatctaaaagccaaggagaaaaatttcagaataaaattaacacatctgatgccttgacctcacacttctagcctcc---------agaaaataaattcccattgtttaactcatccagtctgcagtaattgttataacaaccctagcaaagtaatataGGAAGtatatatatat-tatatatgt i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48810970 951 + 183952662 CAGTTAT------------------------------------------------------ATTTCTAACAAGAGAAAATTCAATGCGAGCCTCAGATTTGGAAACAAGATATTACAGAGATGAAAATTTAGGATTAAGGTCAGATTTGGTGCAACTATGCCAGATACAGAAAAGGCAAATTTTCAGCTCAATCCCCAGCTAAGTACAAGTTCAGTGGTGAAGGCATGAGAAAATGAGCCATTATAA-TAAGTCTGAAATAAGCTTATGATTCCACTTCAATATGGGCATGCAATATAGTCTAACATTTAATCCCTGGAAAAAATGATGACGTCACACTGAAATCTTGACTCATAAGAGAACTTTTTTATACTGTTCCCTAAGTCAA-TTATTTCTACTTCATTCTTGTGTTAAGGGCAGGCTCAATTCTCACTCATTCAAAAACGATA-TCACCTGAAGCTTTTCTTTAAGTCTTGTTTTCTCTGCAGTGAGAAAATTAATCAAGGGGTTAAAATGTATATTAAATGATATATGTATTATGTGTAAAAGTTATATAATATAGATCAGGGAAGAATATATTGCATAtgttataggctgaattgtgtcctttcccccaaattcatatgctgtaccctgccccctgccaccccagtatatcagaaggtggctatatttggagacagagacttttaagaggtaactaatgtaaaacgaggtcacatgtgtgggtcctaatccaatatcactggtgtccttatttgaagaggaagtttaggtacagacata-catgtgcacagaaaaaagaccacgagaagacaagatgagaaaatgactatctaaaagccaaggagagaaatttcagaataaaattaacacatctgatgccttgacctcacacttctagcctcc---------agaaaataaatttctgttgtttaactcatccagtctgcagtaattgttataacaaccctagcaaagtaatataGGAAGtatatatataa-tatatatat i ponAbe2.chr5 C 0 I 160 s nomLeu3.chr12 54729774 961 + 109391073 AAGTTAT------------------------------------------------------ATTTCTAACAAGAGAAAATTCAATGTAAGCCTCAGATTTGGAAACAAGATATTACAGAGAGGAAAATTTAGGATTAAGGTCAGATTTGGTGCAACTATGCCAGATACAGAAAAGGCAAATTTTCAGCTCAATCCCCAGCTAAGTACAAGTTCAGTGGTGAAGGCATGAGAATATGAGCCATTATAA-GAAGTCTGAAATAAGTTTATGATTCCACCTCAATATGGGCATGCAATATATTTCAACATTTAATCCTTGGAAAAAATGATGACATCACACTGAAATCTTGACTCATAAGAGAACTTTTTTATACTGTTCCCTAAGTTAGTTTACTTCTACTTCATTCTTGTGTTAAGGGTAGGCTCAATTCTTACTCATTCAAAAACGATA-TCATCTGAAGCTTTTCTTTAAGTCTTGTTTTCTCTGCAGTGAGAAAATTAATCAAGGGGTTAAAatgtatattaaattatatatgtattatatataaaagttatataatatagatcagggaagaatatattgcatatgttataggcttaactgtgtccttt-ccccaaattaatatgttgtaccctgccccctgccatcccagtatatcagaaggtggctatatttggcgatagagacttttaagaggtaactaatgtaaaatgaggtcacatgtgtgggtcctaatccaatatcactcgtgtccttatttgaagaggaaatgtaggtacagacata-catgtgcacagaaaaaagaccacgagaagacaagatgagaaaatgactatctaaaagccaaggagagaaatttcagaataaaattaacacatctgatgccctgacctcacacttctagcctccagaactgtgagaaaataaatttctgttgtttaactcatccagtctgcagtaattattataacaaccctagcaaagtaatataggaggtgtatatatatatatatatac i nomLeu3.chr12 C 0 C 0 s rheMac3.chr6 48587274 943 + 180491593 CAGTTAT------------------------------------------------------ATTTCTAACAAGAGAAAATTCAATGTGAACCTCAGATTTGGAAACAAGATATTACAGAGAGGAAATTTTAGGATTAAGGTCAGATTTGGTGCAACTATGCTAGATACAGAAAAGGCAAATTTTCAGCTTAATCCTCAGCTACATACAAGTTCAGTGGGGAAGGCATGAGAAAATGAGCCATTATAATTAAGTCTGAAATAAGTTTATGATTCCACCTCAATATGGGCATGCAATATATTCTAATATTTAATCCCTGGAAAAAATGATGACATCACACTGAAATCTTGACTCATAAGATAACTTTTTTATACTGTTCCTTATGTCAGTTTATTTCTACTTCATTATTGTGTTAAGGGCAGGCTCAATTCTTACTCTTTCAAAAATGATAGTCACCTGAAGCTTTCCTTTAAGTCTTCTTTTCTCTGCAGTGAGAAAATTAATCAAGAGGTTAAAATGTGTATTAAATTATATATGTACTATATATACAAGTTATATAATACAGATCAGGGAAGGATATATTGAATAtgttataggctgaattgtatctttt-ccccaaattcatgtgctatactctgccccctgccaccccagtgtctcagaaggtggctatatttggagatggagactttcaagaggtaactaaaataaaataaggtcacatgtatgggtcctaatccaatatcactggtgtctttatttgaagaggaaatttaggtacagacataccatgtgcacagaaaaaagaccacgagaagacaagatgagaaaatgattatctaaaagccaaggagagaaattttagagtaaaattaatacatctgatgccttgacctcacatttctagcctccagaagtgtgagaaaataaatttttgttgtttaactcatccagtctgtagtaatttttataacagccctaggaaagtaatataGGAAT--------------------- i rheMac3.chr6 C 0 C 0 s macFas5.chr6 49910159 942 + 181584905 CAGTTAT------------------------------------------------------ATTTCTAACAAGAGAAAATTCAATGTGAACCTCAGATTTGGAAACAAGATATTACAGAGAGGAAATTTTAGGATTAAGGTCAGATTTGGTGCAACTATGCTAGATACAGAAAAGGCAAATTTTCAGCTTAATCCCCAGCTACATACAAGTTCAGTGGGGAAGGCATGAGAAAATGAGCCAttataattaagtctgaaataagtttatgattccacctcaatatgggcatgcaatatattctaatatttaatccctggaaaaaatgatgacatcacactgaaatcttgactcataagATAACTTTTTTATACTGTTCCTTATGTCAGTTTATTTCTACTTCATTATTGTGTTAAGGGCAGGCTCAATTCTTACTCTTTCAAAAATGATAGTCACCTGAAGCTTTCCTTTAAGTCTTCTTTTCTCTGCAGTGAGAAAATTAATCAAGAGGTTAAAATGTGtattaaattatatatgtactatatatacaagttatataatacagatcagggaaggatatattgcatatgttataggctgaattgtatctttt-ccccaaattcatgtgctatactctgccccctgccaccccagtgtctcagaaggtggctatatttggagatggagactttcaagaggtaactaaaataaaataaggtcacatgtatgggtcctaatccaatatcactggtgtctttatttgaagaggaaatttaggtacagacata-catgtgcacagaaaaaagaccacgaaaagacaagatgagaaaatgattatctaaaagccaaggagagaaattttagagtaaaattaatacatctgatgccttgacctcacatttctagcctccagaagtgtgagaaaataaatttttgttgtttaactcatccagtctgtagtaatttttataacagccctaggaaagtaatataggaat--------------------- i macFas5.chr6 C 0 C 0 s papAnu2.chr6 46581637 942 + 174439528 CAGTTAT------------------------------------------------------ATTTCTAACAAGAGAAAATTCAATGTGAACCTCAGATTTGGAAACAAGATACTACAAAGAGGAAATTTTAGGATTAAGGTCAGATTTGGTGCAACTCTGctagatacagaaaaggcaaaTTTTCAGCTCAATCCCCAGCTACATACAAGTTCAGTGAGGAAGGCATGAGAAAATGAGCCATTATAATTAAGTCTGAAATAAGTTTATGATTCCACCTCAATATGGGCATGcaatatattctaatatttaatCCCTGGAAAAAATGATGACATCACACTGAAATCTTGACTCATAAGAGAACTTTTTTATACCGTTCCTTATGTCAGTTTATTTCTACTTCATTATTGTGTTAAGGGCAGCCTCAATTCTTACTCTTTCAAAAAGGATAGTCACCTGAAGCTTTCCTTTAAGTCTTCTTTTCTCTGCAGTGAGAAAATTAATCAAGAGgttaaaatgtgtattaaattttatatgtactatatatacaaGTTATATAATACAGACCAGGGAAGGATATATTGCATATGTTATAGGCTGAATTGTGTCtttt-ccccaaattcatgtgCTATACTCTGCCCCCTGCCACCCCAGTGTCTCAGAAGGTGGCTATATTTGGAGATGGAGACTTTCAAGaggtaactaaaataaaataaggtcacatgtatgggtcctaatccaatatcaCTGGTGTCTTTATTTGAAGAGGAAATTTAGGTACAGACATA-CATGTGCACAGAAAAAAGACCACGAGAAGACAAGATGAGAAAATGATTATCTAAAAGCCAAGGAGAGAAATTTGAGAGTAAAATTAATACATCTGATACCTTGACCTCacatttctagcctccagaagtgtgagaaaataaatttttgttgtttaactCATCCAGTCTGTAGTAATTTTTATAACAGCCCTAGGAAAGTAATATaggaat--------------------- i papAnu2.chr6 C 0 C 0 s chlSab2.chr4 46924364 942 + 91010382 CAGTTAT------------------------------------------------------ATTTCTAACAAGAGAAAATTCAATGTGAACCTCAGATTTGGAAACAAGGTATTACAGAGAGGAAATTTTAGGATTAAGATCAGATTTGGTGCAACTATGCTAGATACAGAAAAGGCAAATTTTCAGCTCAATCCCCAGCTACATACAAGTTCAGTGGGGAAGGCATGAGAAAATGAGCCAttataattaagtctgaaataagtttatgattccacctcaatatgggcatgcaatatattctaatatttaatccctggaaaaaatgatgacatcacactgaaatcttgactcataagagaactTTTTTATACTGTTCCTTACGTCAGTTTATTTCTGCTTCATTATTGTGTTAAGGGCAGGCTCAATTCTTACTCTTTCAAAAAGGATAGTCACCTGAAGCTTTCCTTTAAGTCTTCTTTTCTCTGCAGTGAGAAAATTAATCAAGAGGTTAAAATGTGtattaaattatatatgtactatatatacaagttatataatatagatcagggaaggatatattgcatatattataggctgaattgtgtctttt-ccccaaattcatgtgctatactctgccccctgccaccccagtgtctcagaaggtggctatatttggagatggagactttcaagaggtaactaaagtaaaatgaggtcacacgtatgggtcctaatccaatatcactggtgtctttatttgaagaggaaatttaggtacagacata-catgtgcacagaaaaaagaccacgagaagacaagatgagaaaatgactatctgaaagccaaggagagaaatttgagaataaaattaacacatctgatgccttgacctcacatttctagcctccagaagtgtgagaaaataaatttttgttgtttaactcatccagtctgtagtaatttttataacagccctaggaaagtaatataggaat--------------------- i chlSab2.chr4 T 11736 C 0 s calJac3.chr2 47284760 977 - 204313951 CAGTTACATTTTCCAAAGATTTTTGTTCATGTTTTATTATTTTTTAAAAGTATCAGATTGAATTTCTAACAAGCGAAAATTCAGTGTGAACCTCAGATTTGGAAACAAGATATTACAGAGAGGAAAATTCAGGATTAAGGTCAGGTTTGGTACAACTATGCTAGCTACAGAAAAGGCAGATTTGCAGCTCAATCCCCAGCTAAGT--AAGTTCAGTGGTGAAGGCATGAGAAAATGAGCCATTATAATTAAGTCTGAAATGAGTTTATGATTCCACCTCAATATGGGCATGCCATATATTCTAACATTTAATCCCTAGAAAAAATGATGACATCACAATGAAATCTTGACTCATAAGAGAACTTCTTTATACTGTTCCCTAAGTCAATTTATTTCTGCTTCATTCCTATGTTAAGGGAAGACTCAATTCTTACTCATTCAAAAAGGATAGTCACCTGAAGCTTTTCTTTAAGCCTTGTTTTCTCTGCAGTGAGAAAATTAATCAAGGGGTTAAAATGTATATCAAATTATATATGTATTATATACAGAAGTT-----ATACAGATCAGGGAGGGGTTTATTGC--Atgttataggctgaattgtggccttt-cccaaaaatcatatgctatata------------------------aataatatggctatatttggagatacagacttttaagaggtaattaatataaaatgaggtcacatgtatgggtcctaacccaatatcactggtgtc-ttatttgaagaggaaatttaggtacagacatt-catgtgcacagagaaaagaccatgagaagacaagatgagaaaatggctatctacaagccaaggagagaagcttcagaataaaattaacccatctgatgccttgatctcacacgtctagtctccagaactgtaagaaaataaatttctgttgtttaactcatccagtctgcagtaattgttataacaaccctagcaaagtaatataGGAAGTACACACATACGTAT------ i calJac3.chr2 C 0 C 0 e canFam3.chr4 23983598 0 - 88276631 C a score=575.000000 s hg38.chr1_KI270765v1_alt 116041 3 + 185285 ata s panTro4.chr5 117738250 3 - 182651097 ata i panTro4.chr5 C 0 I 2121 s nomLeu3.chr12 54730735 3 + 109391073 aca i nomLeu3.chr12 C 0 C 0 e calJac3.chr2 47285737 0 - 204313951 C e chlSab2.chr4 46925306 0 + 91010382 C e rheMac3.chr6 48588217 0 + 180491593 C e ponAbe2.chr5 48811921 160 + 183952662 I e canFam3.chr4 23983598 0 - 88276631 C e papAnu2.chr6 46582579 0 + 174439528 C e macFas5.chr6 49911101 0 + 181584905 C a score=35734.000000 s hg38.chr1_KI270765v1_alt 116044 68 + 185285 tatatatatatatatatatacacac--acacacacacacatacatatatatatacacatatttgtgtgtg s nomLeu3.chr12 54730738 70 + 109391073 cacacacacatatatatacacatatttgtgtgtgtgtatatatatacatatatacacatatttgtgtgta i nomLeu3.chr12 C 0 C 0 s rheMac3.chr6 48588217 51 + 180491593 ----tatatatatatacacacacac--acacacacacacatatatacacacatacac------------- i rheMac3.chr6 C 0 C 0 s macFas5.chr6 49911101 51 + 181584905 ----tatatatatatatatacacac--acacacacacacatatatacacacatacac------------- i macFas5.chr6 C 0 C 0 s papAnu2.chr6 46582579 51 + 174439528 ----tatatatatgtacacacacac--acacatacacatatatatacacacatacac------------- i papAnu2.chr6 C 0 C 0 s chlSab2.chr4 46925306 51 + 91010382 ----tatatatatatatatatgcac--acacacacacatatatatacacacatacac------------- i chlSab2.chr4 C 0 C 0 s calJac3.chr2 47285737 17 - 204313951 ----------------------------------CACATATATATG---ATATG---------------- i calJac3.chr2 C 0 C 0 e ponAbe2.chr5 48811921 160 + 183952662 I e canFam3.chr4 23983598 0 - 88276631 C e panTro4.chr5 117738253 2121 - 182651097 I a score=1330240.000000 s hg38.chr1_KI270765v1_alt 116112 635 + 185285 tgtgtgtgtgtgtatatatatatatatatatgtgatagagtagatagatagagacatatacagtcatc-cctcagtattagtggggtattgcattcaggagccctgcatataccgaagtctgcacatactcaggtcccacagtcaaccttgcagagctcgcatatgaaaagttggccctccacatatgtgggttacacgtcccacaaatactatattttcaatctgtatttggctg-aaaaaatccacctataagtggactcacacagtttaaaccagtgttattcaaaggtcaactgTTGatatatagatatataaatatctcatatgtataGAGCAAGCGGGAG--AAAAAATCTCTAATCTCTCTTCCTTCCTGCTCTTTTTGGATTGCAAACTCTTCTCTCATAAGTACAAAAAG---TAATGTTAACAAAGTAAAGAGAATTGGAAATAGTAGTGTTTTTGACCACTAGTGTTTTGTAATTTTGGAAAAAAAAATTACTGAAATGTAACTTTTTATTTATATTGAGATGTTTTGACTCATACTCCAATCATACAGAAATAATAGATAAAATATGAAAAAGACTTCTTTTTACATACATAGCTGGATTAAAATATTAGAAATAATTTTCTTCCCTCaa s ponAbe2.chr5 48812081 632 + 183952662 tgtgtgtgtgtatatatatatataaatatatatGATAGAGTAGATAGATAGAGACTTATAcagtcatc-cctcggtattagtggggtattggattcaggagccctgcatataccaaagtctgcgcgtactcaggtcccacagtcaagcttgcagagttcgcatatgaaaagttggccctccacatatgtgggtttcacatcccacaaatacaatattttcaatctgtatttggctg-aaaaaatccacctataagtggactcacatagtttaaacctgtgttattcaaaggtcaactgTTGATATATAGATACATAAATATCTCATATGTATAGAGCAAGCAGGAG--AAAAAATCTCAAATCTTTCTTCCTTCCTGCTATTTT-GGATTGCAAACTCTTCTCTCTTAAGTACAAAAAG---TAATGTTAACAAAGTGAAAAGAATTGTAAATAGTAGTGTTTTTGACCACTAGTGTTTTGTAATTTTAGAAAAAAAA-TTACTGAAATGTAACTTTTTATTTATATTGAGATGTTT-GACTCATACTCCAATCATACAGAAATAGTAGATAAAATATGAAAAATACTTCTTTTTACATACATAGCTAGATTAAAATATTAGAAATAATTTTCTTCCCTCaa i ponAbe2.chr5 I 160 C 0 s nomLeu3.chr12 54730808 629 + 109391073 ------tatatatatatatatatatatatatatgatagagtagatagttagagacatatacagtcatcacttcagtattagtggggtattggattcaggagccctgcatataccgaagtctgtgcatactcaggtcccacagtcaaccttgaagggctcgcatatgaaaagttggccctccacatatgtgggtttcatgtcccacaaatactatattttcaatctgtatttggctg-aaaaaatctacctacaagtggactcacacagtttaaacctgtgttattcaaaggtcaactgttgacatatagatacataaatatctcatatgtataGAGCAAGCGGGAG-AAAAAAATCACAAATCTCTCTTCCTTCCTGCTCTTTTTGGATTGCGAACTCTTCTCTCATAAGTACAAAAAG---TAACGTTAACAAAGTAAAAAGAATTGGAAATAGTAGTGTTTTTGACCACTAGTGTTTTCTAATTTTAGAAAAAAAA-TTACTGAAATGTAACTTTTTATTTATATTGAGATGTTT-GACTCATACTCCAATCATACAGAAATAATAGATAAAATATGAAAAACACTTCTTTTTACATACATAGCTGGATTAAAATATTAGAAATAATTTTCTTCCCTCAG i nomLeu3.chr12 C 0 C 0 s rheMac3.chr6 48588268 590 + 180491593 ---------------------------atatatgatagagtagatatatagagacatatacagtcatc-tctcggtattagtagggtattggtttcagaagccctgcatataccaaagtctgcacatactcaggtcccatagtcaaccttgcagagctcgcatatgaaaagtcggccctccacatatgtgggtttcacatcccacaaatactatattttcaatccgtatttggttg-aaaaaatccacctataagtggactcatacagtttaaacttgtgttattctaaggtcaactgttgatatatagatacataaatatttcatatgtataGAGT---------------------AAATCTCTCTTCCTTCCTGCTCTTTTTGGATTGCAAACTCTTCTCTCAAAAGTACAAAAAGTAATAATGTTAACAAAGTAAAAAGAATTGGAAATAGTAGTGTTTTTGACCACTGGCATTTTGTAATTTTAGAAAAAAAA-TTACTGAAATGTAACTTTTTATTTATACTGAGATGTTT-GACTCATACTCCAATAATACAGAAATACTAGATAAAATATGAAAAAGACTTCTTTTTACATACATAGCTGGATTAAAATATTAGAAATAATTTTCTTCCCTCaa i rheMac3.chr6 C 0 C 0 s macFas5.chr6 49911152 590 + 181584905 ---------------------------atatatgatagagtagatatatagagacatatacagtcatc-tctcggtattagtagggcattggtttcagaagccctgcatataccaaagtctgcacatactcaggtcccatagtcaaccttgcagagctcgcatatgaaaagtcggccctccacatatgtgggtttcacatcccacaaatactatattttcaatccgtatttggttg-aaaaaatccacctataagtggactcatacagtttaaacttgtgttattctaaggtcaactgttgatatatagatacataaatatttcatatgtataGAGT---------------------AAATCTCTCTTCCTTCCTGCTCTTTTTGGATTGCAAACTCTTCTCTCAAAAGTACAAAAAGTAATAATGTTAACAAAGTAAAAAGAATTGGAAATAGTAGTGTTTTTGACCACTAGCATTTTGTAATTTTAGAAAAAAAA-TTACTGAAATGTAACTTTTTATTTATACTGAGATGTTT-GACTCATACTCCAATCATACAGAAATACTAGATAAAATATGAAAAAGACTTCTTTTTACATACATAGCTGGATTAAAATATTAGAAATAATTTTCTTCCCTCaa i macFas5.chr6 C 0 C 0 s papAnu2.chr6 46582630 591 + 174439528 ---------------------------atatatgatagagtagatagatagagacatatacaGTCATC-TCTCGGTATTAGTAGGGTATTGGTTTCAGGAGCCCTGCATATACCAAAGTCTGCACATACTCAGGTCCCATAGTCAACCTTGCAGAGCTCGCATATGAAAAGTCGGCCCTCCACATATGTGGATTTCACATCCCACAAATACTATATTTTCAATCCgtatttggttgaaaaaaatccacCTATAAGTGGATTCATACAGTTTAAACTTGTGTTATTCTAAGGTCAACTGTtgatatatagatacataaatatttcatatgtataGAGT---------------------AaatctctcttccttcctgctcTTTTTGGATTGCAAACTCTTCTctcaaaagtacaaaaagtaataatgttaacaaagtaaaaagaattgGAAATAGTAGTGTTTTTGACCACtagcattttgtaattttagaaaaaaaa-ttactgaaatgtaactttttatttatacTGAGATGTTT-GACTCATACTCCAATCATACAGAAATActagataaaatatgaaaaagacttCTTTTTACATACATACCTggattaaaatattagaaataattttcttccctcaa i papAnu2.chr6 C 0 C 0 s chlSab2.chr4 46925357 610 + 91010382 ---------------------------atatatgatagagtagatagatagagacatatacagtcatc-cctcggtattagtagggtattggtttcaggagccctgcatataccaaagtctgcacatactcaggtcccatagtcaaccttgcagagctcgcatatgaaaagtcggccctccacatatgtgggtttcacatcccacaaatactatattttcaatctgtatttggttg-aaaaaatccacctataagtggactcatacagtttaaacttgtgttattctaaggtcaactgttgatatatagatacataaatattttatatgtataGAGTAAGCGGGAG-AAAAAAATCTCAAATCTCTCTTCCTTCCTGCTCTTTTTGGATTGCAAACTCTTCTCTCAAAAGTACAAAAAGTAATAATGTTAACAAAGTAAAAAGAATTGGAAATACTAGTGTTTTTGACCACTAGCATTTTGTAATTTTAGAAAAAAAA-TTACTGAAATGTAACTTTTTATTTATACTGAGATGTTT-GACTCATACTCCGATCATACAGAAATACTAGATAAAATATGAAAAAGACTTCTTTTTACATACATAGCTGGATTAAAATATTAGAAATAATTTTCTTCCCTCaa i chlSab2.chr4 C 0 C 0 s calJac3.chr2 47285754 608 - 204313951 -----------------------ATATATATATgatagagtagatagatagatacatacacaggcatc-cttccctattagtggagcattggtttcagaagccctgcatgtaccaaagtccatgcatactcaggtcccacagtcaaccttgtggagtccatgtgtgaaaagtcgaccttccacatatgcgggtttcacattccacaaatactatattttcaatttgtatttggttg-aaaaactccacctataagtgagctcacacaatttaaacctgtgttatt-aaaggtcaactgttgatatatagatacatagataTCTCATATATATAGAGGAAGAGGGAGAAAAAAAGTCTCAAGTCTCTCTTCTTTCCTGCTCTTTTTGGATAGCAAACTCTTCTCTCATAAATACAAAATATAATAATGTTAACAAAGGAAAGAGAATTGGAAATAGTAGTATTTTTGATCACTAGTGTTTTGTAATTTTAGGAAAAA---TTATTGAAATGTAACTTTTTATTT----TGACGTTTTT-GACTTGTACTCCAACCACACAGAAATCATAGATAAAATATGAAAATGACTTTTTTTTACATACATAGCTAGGTTAAAATATTGGAAATAGTACTCTTCCATTAA i calJac3.chr2 C 0 C 0 e canFam3.chr4 23983598 0 - 88276631 C e panTro4.chr5 117738253 2121 - 182651097 I a score=243604.000000 s hg38.chr1_KI270765v1_alt 116747 133 + 185285 aggatcccctatttaataaacggtgctgggaaaactggctagccatatgtagaaagctgaaactggatccctttcttacaccatacacaaaaattaactcaagatggattaaagacttaaatgaaagacctaa s ponAbe2.chr5 48812713 133 + 183952662 aggatcccctatttaataaatggtgctgggaaaactggctagccatatgtaggaagctgaaactggatcccttccttacaccatacacaaaaattaactcaagatggattaaagacttaaatgtaagacataa i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54731437 133 + 109391073 aggatcccctatttaataaatggtgctgggaaaactggctagccctatgtagaaagctgaaactggatcccttccttacaccatatacaaaaattaactcaagatgtattaaagacttaaatgtaagacctaa i nomLeu3.chr12 C 0 C 0 s rheMac3.chr6 48588858 133 + 180491593 aggattccctatttaataaatggtgctgggaaagctggctagccatatgtagaaagctgaaacaggatcccttccttacaccatatacaaaaattaactcaagatggattaaagacttaaatgtaagacctaa i rheMac3.chr6 C 0 M 512 s macFas5.chr6 49911742 133 + 181584905 aggattccctatttaataaatggtgctgggaaagctggctagccatatgtagaaagctgaaacaggatcccttccttacaccatatacaaaaattaactcaagatggattaaagacttaaatgtaagacctaa i macFas5.chr6 C 0 C 0 s papAnu2.chr6 46583221 132 + 174439528 aggattcccta-ttaataaatggtgctggaaaagctggctagccatatgtagaaagctgaaacaggatcccttccttacaccatatacaaaaattaactcaagatggattaaagacttaaatataagatctaA i papAnu2.chr6 C 0 C 0 s chlSab2.chr4 46925967 133 + 91010382 aggattccctatttaataaatggtgctgggaaagctggctagccatatgtagaaagctgaaacaggatcccttccttacaccatatacaaaaattaactcaagatggattaaagacttaaatgtaagacctaa i chlSab2.chr4 C 0 C 0 e calJac3.chr2 47286362 0 - 204313951 C e canFam3.chr4 23983598 0 - 88276631 C e panTro4.chr5 117738253 2121 - 182651097 I a score=828760.000000 s hg38.chr1_KI270765v1_alt 116880 662 + 185285 cgccataaaaaaccctagaagaaaacctaggcaataccattcaagacataggcacgggcaaagacttcacgaccagaacaccaaaagcaatggcaacaaaagctaaaatagacaaatgcgatctaattaaactaaagagcttctgcatagcaaaagaaactctcatcagagtgaacaggcaatctaaaaaataggagaaaagttttgcaatatacccatctaacaaagggctaatatccagaatctacaaagaacttcaacaaatttacaagaaaa----aaacaaccccatcaaaaagtgggcaaagaatatgaacagacacttc-tcaaaagaagacatttatgcagccaacaaacacat-aaaaaatgctcatcatctctggtcatcagagaaatgcatatcaaaaccacaatgagataccatcacatgccagttagaatgatgatcattaaaaagtcaggaaacaacagatactggagaggatgtggagaaataggaatgcttttacactgctggttggagcgtaaattagttcaaccattgtggaaagcagtgtggcgattcctcaaggatctagaactagaaataccatttgacccagcgatcccattactgggtgtatacccgaaggattatacatcatgctactataaagatgtatacat s ponAbe2.chr5 48812846 666 + 183952662 aaccataaaaa-ccctagaagaaaacctaggcaataccattcaagacataggcatgggcaaagacttcatgactagaacaccaaaagcaatggcaacaaaagctaaaatagacaaatgggatctaattaaactaaagagcttctgcacagcaaaagaaactctcatcagagtgaacaggcaacctacagaataggagaaaatttttgcaatatacccgtctgacaaagggctaatatccagaacctacaaagaacttaaacaaatttacaagaaaataacaaataaccccatcaaaaagtgggcaaagaatatgaacagacaattcctcaaaagaagacatttatgtagccaatagacacat-aaaaaatgctcatcatcgctggtcatcagagaaatgcaaatcaaaaccacaatgagataccattgcatgccagttagaatgatgatcattaaaaagtcaggaaacaacagatactggggaggatgtggagaaataggaatgcttttacactgttggtgggagcgtaaattagttcaaccattgtggaagacagtgtggtgattcctcaaggatctagagctagaaataccatttgacccagccatcccattactgggtatatacctgaaggattataaatcatgctactataaagatgtacacat i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54731570 661 + 109391073 caccataaaaa-ccccagaagaaaacctaggcaataccattcaagacataggcatgggcaaatacttcatgactagaaaaccaaaagcaatggcaacaaaagctaaaatagacaaatgagatctaattaaactaaagagcttctgcacagcaaaggaaactctcatcagagtgaacaagcaacctacaaaacaggagaaaatttttgcaatatgcccatctgacaaagggctaatatccagaatctacaaagaacttaaacaaatttacaagaaaa----aaacaaccccatcaaaaagtgcgcaaagaatatgaacagacacttc-tcaaaagaagacatttatgcagccaacagacacat-aaaaaatgctcatcatcgctggtcatcagagaaatgcaaatcaaaaccacaatgagataccatcgcatgccagttagaatgatgatcattaaaaagccaggaaacaacagatactggagaggatgtggagaaataggaatgcttttacactgttggtggaactgtaaactagttcaaccattgtggaagacagtgtggcaattcctcaaggatctagaactagaaataccatttgacccagtgatcccattactgggtatatacccgaaggattataaatcatgctactataaagatgtatacgt i nomLeu3.chr12 C 0 C 0 s macFas5.chr6 49911875 665 + 181584905 -accataaaaa-ccctagaagaaaacctaggcaataccattcaggacataggcatgggcaaagacttcctgactaaaacaccaaaagcaatggcaacaaaagccaaaacagacaaatgggatctaactaaactaaagagcttctgcacagcaaaagaaactgtcatcaaactgaacaggcaatctacagaatgggagaaaatttttgcaatcgacctatttgagaaagggttaatatccagaatctacaaagaacttaaacaaatttacaagaaaaaaacaaataactccatcaaaaagtgggtaaaggatatgaacagacacttc-tcaaaagaagacatttatgcagccaacagacatatgaaaaaatgatcatcattgctggtcatcagagaaatgcaaatcaaaaccacaatgagataccattgcatgccagttagaatagtgatcattaaaaagtcaggaaacaacagatactggagaggatgtggagaaataggaatgcttttacactgttggtgggagtgtaaattagttcaaccattgtggaagacagtgtggcaattcctcaaggatctacatctaaaaataccatttgacccagcgatcccattactggatatataccagaaggattataaatcatgctagtataaagatgtatacat i macFas5.chr6 C 0 C 0 s papAnu2.chr6 46583353 665 + 174439528 -ACCATAAAaa-cgctagaagaaaacctaggcaataccattcaggacataggcatgggcaaagacttcctgactaaaacaccaaaagcaatggcaacaaaagccaaaacagacaaatgggatctaactaaactaaagagcttctgcacagcaaaagaaactgtcatcagagtgaacaggcaatctacagaatgggagaaaatttttgcaatctacctatctgagaaagggttaatatccagaatctacaaagaacttaaacaaatttacaagaaaaaaacaaataactccatcaaaaagtgggtaaaggatatgaacagacacttc-tcaaaagaagacatttatgcagccaacagacatatgaaaaaattatcatcattgctggtcatcagagaaatgcaaatcaaaaccacaatgagataccattgcatgccagttagaatggtgatcattaaaaagtcaggaaacaacagatactggagaggatgtggagaaataggaatgcttttacactgttggtgggagtgtaaattagttcaaccattgtggaagacagtgtggcaatttctcaaggatctacatctaaaaataccatttgacccagcaatcccattactggatatataccggaaggattataaatcatgctactataaagatgtatacat i papAnu2.chr6 C 0 C 0 s chlSab2.chr4 46926100 665 + 91010382 -accataaaaa-ccctagaagaaaacctaggcaataccattcaggacataggcatgggcaaagacttcatgactaaaacaccaaaagcaatggcaacaaaagccaaaacagacaaatgggatctaactaaacgaaagagcttctgcacagcaaaagaaactgtcatcagagtgaacaggcaacctacagaatgggagaaaatttttgcaatctacctatttaagaaagggttaatatccagaatctacaaagaacttaaactaattaacaagaaaaaaacaaataactccatcaaaaattgggtaagggatatgaacagacacttc-tcaaaagaagacatttatgcagacaacagacatatgaaaaaataatcatcattgctcgtcatcagagaaatgcaaatcaaaatcacaatgagatactattgcatgccagttagaatggtgatcattaaaaagtcaggaaacaacagatactggagaggatgtggagaaataggaatgcttttatactgttggtgggagtgtaaaatagttcaaccattgtggaagacagtgtggcaattcctcaaggatctacatctaaaaataccatttgacccagcgatcccattactggatatataccagaaggattataaatcatgctactataaagatgtatacat i chlSab2.chr4 C 0 C 0 e calJac3.chr2 47286362 0 - 204313951 C e rheMac3.chr6 48588991 512 + 180491593 M e canFam3.chr4 23983598 0 - 88276631 C e panTro4.chr5 117738253 2121 - 182651097 I a score=815714.000000 s hg38.chr1_KI270765v1_alt 117542 474 + 185285 gcacacgtatgttaattgtggtgctattcacaatagcaaagacttggaaccaacccaaatgtccatcaatgatagactggattaaaaaa-tgtggcacatatgtgccatggaatactatgaagccataaaaaaggataagttcatgtcctttgcaaggacatggatgaagctggaaaccatcattctcagcaaactatcacaaggacagaaaaccaaacaccgcatgttctcactcgcagatgggagttgaacaatgagaatgcatggacacagggtggggaacatcacacactggggcctgtcaggggttggggggctgggggacagatagcatcaggagaaatacctaatgtaaatgacaagttgatgggtacagcaaaccaacatggcacatgtatacctatgtaacaaacctgcatatgatgcacacgtaccctaaaacttaagatt---aaaaaaaaaCA--------TTTCTTCCCTCAT s ponAbe2.chr5 48813512 483 + 183952662 gcacacttatgttacttgtggtgctattcacaatagcaaagacttggaaccaacccaaatgtccatcaatgatagactggattaaaaaaatgtggcacatatataccatggaatactatgaagccatagaaaaggataagttcatgtcctttgcagggacatggatgaagctggaaaccatcattctcagcaaactatcacaaggacagaaaaccaaacaccacatgttctcactcacaggtaggagttgaacaatgagaatgcatggacacatggtggggaacatcacacactggggcctgtcagggggtggggggcttggggacagatagcattaggagaaatacctaatgtaaatgacaagttgatgggtgcagcaaaccaacatggcacatgtacacctatgtaacaaacccgcacgtggtgcacatgtactctggaacttaagatt---aaaaaaaaaaaaaaaaAAATTTCTTCCCTCAT i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54732231 477 + 109391073 gcagacatatgttcattgtggtgctattcacaatagcaaagacttggaaccaacccaaatgtccatcaataatagactggattaaaaaaatgtggcacatatgagccatggaatactatgaagccataaaaaaggataagttcatgtcctttgcaggaacatggatgaagctggaaaccatcattctcagcaaactatcacaaggacagaaaaccaaacaccatgtattctcactcacaggtgggagttgaacaatgagaatgcatggacacagggtggggaacatcacacactggggcctgtcagggcgtggggggctgggggacagatagcattaggagaaatgcctaatgtaaatgacaagttgatgggtacagcaaaccaacatggcacatgtatacctatgtaacaaacctacacgtggtgcacatgtaccctagaatttaagttt---aaaaaaaaaaa------TTTTTCTTCCCTCAT i nomLeu3.chr12 C 0 C 0 s rheMac3.chr6 48589505 474 + 180491593 gcacatgtatgtttattatggcactattcacaatagcaaagacttggaaccaacccaaatgtccatcaacgatagactgtattaaaaaa-tgtggcacatacatgtcatggaatactatgcagccataaaaaatgatgagttcatgtcctttgcagggacatggatgaagctggaaaccatcattctaagcaaactatcacaaggacagaaaaccaaacaccgcatgttctcactaataagtgggatctgaacagtgagaatgcatggacacagggtggggaacattacacactggggcctgtcagggggtgtggggccaggggacagatagcattaggagaaatatctaatgtaaatgacaagttgatgggtgtagcaaaccaacatggcacatgtatacctatgtaacaaacctgcatgttgtgcacatgtaccctaaaacttaagaat--aaaaaaaaaaaa---------GTCTTTCCTCAC i rheMac3.chr6 M 512 C 0 s macFas5.chr6 49912540 473 + 181584905 gcacacatatgtttattgcggtgctattcacaatagcaaagacttggaaccaacccaaatgtccatcaacgatagactgtattaaaaaa-tgtggcacatacatgtcatggaatactatgcagccataaaaaatgatgagttcatgtcctttgcagggacatggatgaagctggaaaccatcattctaagcaaactatcacaaggacagaaaaccaaacaccgcatgttctcactaataagtgggatctgaacagtgagaatgcatggacacagggcggggaacattacacactggggcctgtcagggggtgtggggccaggggacagatagcattaggagaaatatctaatgtaaatgacaagttgatgggtgtagcaaaccaacatggcacatgtatacctatgtaacaaacctgcatgttgtgcacatgtaccctaaaacttaagaat---aaaaaaaaaaa---------GTCTTTCCTCAC i macFas5.chr6 C 0 C 0 s papAnu2.chr6 46584018 472 + 174439528 gcacacatatgtttattgtggtgctattcacaatagcaaagacttggaaccaacccaaatgtccatcaacaatagactgtattaaaaaa-tgtggcacatacatgtcatggaatactatgcagccataaaaaatgatgagttcatgtcctttgcagggacatggatgaagctggaaaccatccttctaagcaaactatcacaaggacagaaaaccaaacaccgcatgttctcactaataagtgggatcTGAACAGtgagaatgcatggacacagggcgggcaacatcacacactggggcctgtcagggggtgtgGGGCCAGGGGacagatagcattaggagaaatatctaatgtaaatgacaagttgatgggtgtagcaaaccaacatggcacatgtatacctatgtaacaaacctgcatgttgtgcacatgtaccctaaaacttaagaat----aaaaaaaaaa---------gtcttccctCAC i papAnu2.chr6 C 0 C 0 s chlSab2.chr4 46926765 476 + 91010382 gcacacatatgtttattgcagtgctattcacaatagcaaagacttggaaccaacccaaatgtccatcaacgataaactgtattaaaaaa-tgttgcacatacatgtcatggaatactatgcagccataaaaaatgatgagttcatgtcctttgcagggacatggatgaaactggaaaccatcattctaagcaaactatcacaaggacagaaaaccaaacaccacatgttctcaccaataagtgggatctgaagagtgagaatgcatggacacagggtggggaacatcacacactggggcctgtcagggggtgtggggccaggggacagatagcattaggagaaatatctaatgtaaatgacaagttgatgggtgtaacaaaccaatatggcacatgtatacctatgtaacaaacctgcacgttgtgcacatgtacgctaacacttaagaataaaaaaaaaaaaaA---------GTCTTCCTTCAC i chlSab2.chr4 C 0 C 0 e calJac3.chr2 47286362 0 - 204313951 C e canFam3.chr4 23983598 0 - 88276631 C e panTro4.chr5 117738253 2121 - 182651097 I a score=616082.000000 s hg38.chr1_KI270765v1_alt 118016 273 + 185285 GAGGTACAAAGCCAAGCATTACACTGGGGCCATGATAGTCCAGGTTGCTGAAAGATTTAGATCTAAAGACTGAAAATTGGGATATATATTgagagagagagagagagagaACAAATGGTAACCTAAATTTAATAAAATAATAATAGACAAATTAGGGTAACAGGCATATGAGTATTTTTTGTTCTAACAATTCTTTTATTTTCAAACTTATCTATAATCTTACATTTATTTCCCAATAAAAAGGATTTTAAGTTAAAAAAAGAAAGTTTTTCT s ponAbe2.chr5 48813995 268 + 183952662 GAGGTACAAAGCCAAGCATTACACTGGGGCCATGATAGTCCAGGTTGCTGAAGGATTTAGATCTAAAGACTGAAAATTGGGATATATATTGAGAGAGAGAGAGAGAGA--ACAAATGGTAACCtaaatttaataaaataataataGACAAATTAGGGTAATGGGCATATGAGTATTTTTTGTTCTAACAATTCTTTTATTTTCAAAC--ATCTATAATCTTAAATTTATTTCCCAATAAAAAGGATTTGAAGTTAAAAAA-TAAAGTTTTTCT i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54732708 270 + 109391073 GAGGTACAAAGCCAGGCATTACACTGGGGCCGTGATAGTCCAGGTTGCTGAAAGATTTAGATCTAAAGACTGAAAATTGGGATATATATTgagagagagagagagaga--ACAAATGGTAACCTAAATTTAATAAAATAATAATAGACAAATTAGGGTAACGGGCATATGAGTA-TTTTTGTTCTAACAATTCTTTTATTTTCAAACTTATCTATAATCTTAAATTTATTTCCCAATAAAAAGGATTTTAAGTTAAAAAAAGAAGGTTTTCCT i nomLeu3.chr12 C 0 C 0 s rheMac3.chr6 48589979 268 + 180491593 GAGGTACTAAGCCAAGCATTACGCTGGGGCCATGATAGTCCAGGTTGCTGAAAGGTTTAGATCTAAAGACTGAAAATTGGGATATATATTGAGAGAGAGAGAGAGA----ACAAATGGTAACCTAAATTGAAT-AAAAAAAAATAGACAAATTAGGGTAAAGGGCGTATGAGTATTTTTTGTTCTAACAATTCTTTTATTTTCGAACTTATCTATAATCTTAAATTTATTTCCCAATAAAAAGGATTTTAAGTTAAAAAAAGAAAGTTTTTCT i rheMac3.chr6 C 0 C 0 s macFas5.chr6 49913013 269 + 181584905 GAGGTACTAAGCCAAGCATTACGCTGGGGCCATGATAGTCCAGGTTGCTGAAAGGTTTAGATCTAAAGACTGAAAATTGGGATATATATTGAGAGAGAGAGAGAGA----ACAAATGGTAACCTAAATTGAATAAAAAAAAAATAGACAAATTAGGGTAAAGGGCGTATGAGTATTTTTTGTTCTAACAATTCTTTTATTTTCGAACTTATCTATAATCTTAAATTTATTTCCCAATAAAAAGGATTTTAAGTTAAAAAAAGAAAGTTTTTCT i macFas5.chr6 C 0 C 0 s papAnu2.chr6 46584490 269 + 174439528 GAGGTACTAAGCCAAGCATTACACTGGGGCCATGATAGTCCAGGTTGCTGAAAGGTTTAGATCTAAAGACTGAAAATTGGGATatatattgagagagagagagaga----acaaatggTAACCTaaattgaataaaaaaataatagacaaattAGGGTAAAGGGCGTATGAGTATTTTTTGTTCtaacaattcttttattttcaaacttatctataatcttaaatttatttcccaataaaaaggattttaagttaaaaaaagaaagtttttct i papAnu2.chr6 C 0 C 0 s chlSab2.chr4 46927241 269 + 91010382 GAAGTACTAAGCCAAGCATTACACTGGGGCCATGATAGTCCAGGTTGCTGAAAGGTTTAGATCTAAAGACTGTAAATTGGGATATATATTGAGAGAGAGAGAGAGA----ACAAATGGTAACCTAAATTGAATAAAAAAATAATGGACAAATTAGGGTAAAGGGCGTATGAGTACTTTTTGTTCTAACAATTCTTTTATTTTCAAACTTATCTATAATCTTAAATTTATTTCCCAATAAAAAAGATTTTAAGTTAAAAAAAGAAAGTTTTTCT i chlSab2.chr4 C 0 C 0 s calJac3.chr2 47286362 260 - 204313951 CAGGTGCAAAGCCAAGCATTACACTGGGCTGATGATAGTCCAGGTTGCTGCAAGATTTAGATCTAAAGATTAAAAATTGGGATATACATTGAGAGAGAGA----------ACAAATGGGAACCTAAATTTGATAA---AATAATAGGCAAATTAGGGTAAAGGGCATATGAGTATTTTTTGTTCTAACAATTCTTTTATTTTCAAACTTATCTATAATCTTAAATTTGTTTCCCAATAAAAAGGATTTTAAGTTAAAAAAAGGAAGATTTTCT i calJac3.chr2 C 0 C 0 e canFam3.chr4 23983598 0 - 88276631 C e panTro4.chr5 117738253 2121 - 182651097 I a score=608735.000000 s hg38.chr1_KI270765v1_alt 118289 206 + 185285 GTAGTAACATTTTCACAACTAGGGCCTTTAagactgaggaaatactccaagctctgagcaaactcagtaagtataaatccatatgtagacataccacagtaaaatgcaagatactaaagactaatacaatattttcaaatcaaccagagatggaaggcagattacctgcaaaggaaggacaattactttatcacagacttctcttc s panTro4.chr5 117740374 205 - 182651097 GTAGTAACATTTTCAGAACTAGGGCCTTTAagactgaggaaatactccaagctctgagcaaactcaataagtataaatctatatgtagacataccacagtacaatgcaagatactaaagactaatacaatattttcaa-tcaaccagagatgagaggcagattacctgcaaaggaaggacaattacattatcacagacttctcttc i panTro4.chr5 I 2121 C 0 s ponAbe2.chr5 48814263 206 + 183952662 GTAGTAACATTTTCACAACTAGGGCCTTTAagactgaggaaatactccaagctctgagcaaactcaataagtataaatccatatgtagacataccgcagtaaaatgcaagacactaaagactaatacaatattttcgaatcaaccagagatggaaggcagattacctgcaaaggaaggagaattacattatcacagacttctcttc i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54732978 206 + 109391073 GTAGTAACATTTTCACAACTAGGGACTTTAagactgaggaaatactccaagctctgagcaaactcaataagtataaatccatatgtagacatatcacagtaaaatgcaagacactaaagactaatacaatatttttgaatgaaccagagatggaaggcagattacctgcaaaggaaggacaattactttatcactgacttctcttc i nomLeu3.chr12 C 0 C 0 s rheMac3.chr6 48590247 206 + 180491593 GTAGCAACATTTTCACAACTAGGGCTTTtcagattgaggaaatactccaacctctgagcaaactcaacatgtataaatccatacatagatataccacagtaaaatgcaagatactaaagactaatacaatattttcaaatcaaccagagatagaaggcagattacctgcaaaggaaggacaattacatcatcacagacttctcttc i rheMac3.chr6 C 0 C 0 s macFas5.chr6 49913282 206 + 181584905 GTAGCAACATTTTCACAACTAGGGCTTTtcagattgaggaaatactccaacctctgagcaaactcaacatgtataaatccatacatagatataccacagtaaaatgcaagatactaaagactaatacaatattttcaaatcaaccagagatagaaggcagattacctgcaaaggaaggacaattacatcatcacagacttctcttc i macFas5.chr6 C 0 C 0 s papAnu2.chr6 46584759 206 + 174439528 gTAGCAACATTTTCACAACTAGGGCTTTTCAGATTGAGGAAATACTCCAACCTCTGAGCAAACTCAACATGTATAAATCCATACATAGATATACCACAGTAAAATGCAAGATACTAAAGACTAatacaatattttcaaatcaaCCAGAGATAGAAGGCAGATTACCTGCAAAGGAAGGACAATTACATCATCACAGACTTCTCTTC i papAnu2.chr6 C 0 C 0 s chlSab2.chr4 46927510 206 + 91010382 GTAGCAACATTTTCACAACTAGggattttcagattgaggaaatactccaacctctgagcaaactcaacatgtataaatccatacacagatataccacagtaaaatgcaagatactaaagactaatacaatattttcaaatcaaccagagatagaaggcagattacctgcaaaggaaggacaattatatcaccacagacttctcttc i chlSab2.chr4 C 0 C 0 s calJac3.chr2 47286622 206 - 204313951 GTAGTCACATtttcccaactagggcttttcagattgaggaaatactccaagctctgagcaaaatcagtaagtataaatccatacacagacataccacagtaaaatgcaagatactaaagactaacagaatgccttataatcaaccagagatgcaaggcagattacctgcaaaggaaggatgattacatgatcacagacttcgcttc i calJac3.chr2 C 0 C 0 e canFam3.chr4 23983598 0 - 88276631 C a score=2121486.000000 s hg38.chr1_KI270765v1_alt 118495 634 + 185285 at-caac---gagaacagacaatacaggaataacatctcccaagttgtgagggagactaacagatgacatgaaattctacgaccaaataaagcataattcaatgggcagcagttaacagaattaagctgtttccagacatCTATGGAGAGATTTAACTCAAAGATGTCACTGTAAATTTGATTGTTGAGATGTAGT-AATGGATACTTGGCAAGGTTATT--GAATTAGTTAAACGATCTTCAAAGCTTAGGTCATGTATCTTCATTAAACACATGGTGCTTTGCATTTACTA-AAGAAGGGCCTCCGTTTTCTCTCCAAATAAATCATTGCGACCTTAGCACCCCAAGTG-------------------TAAAAACCTCTTTTATTTCTATTCTTGATCTCTAGTCCCTGCTTATGTGTATGCATAAATGCATGACACCGTGCTTCTCTTTTAGTTATTTATTTCTAGAGATCATGTCTTTGAAAATCATTATATTCCCAGCAACTATTTAGAGTGGTACTAAGCTAACTTGGTTTATGCTGTCAACCGCATAGCAGTTATTTGATTGGCCCATTCCTTTATAAAATATTTTATGCTTAGATGATGAACTCTACATAAATT-CAGCCAGGAGAATGTTTTCCTTGGCAATCTCTGGGAGAT s panTro4.chr5 117740579 632 - 182651097 at-caataatgagaacagacaatacaggaataacatctcccaagttatgagag-gaataacagatgacatgaaattctacaaccaaataaagcataattcaatgggcagcagttaacagaattaagctgtttccggacatCTATGGAGAGATTTAACTCAAAGATGTCACTGTAAATTTGATTTTTGAGATGTAGT-AATGGATACTTGGTAAGGTTGTT--GAATTA----AACGATCTTCAAAGCTTAGGTCATGTATCTTCATTAAGCACATGGTGCTTTGCATTTACTA-AAGAAGGGCTTCTGCTTTCTCTCCAAATAAATCATTGCGACCTTACCACCCGAAGTG-------------------TAAAAACCTCCTTTATTTCTATTCCTGGTCTCTAGTCCCTGCTTATATGTATGCATAAATGCATGACACCGTGCTTCTCTTTTAATTATTTATTTCTAGAGATCATGTCTTTGAAAATAATTGTATTCCCAGCAACTATTTAGAGTGGTACTAATTTAACTTGGTTCACGGTGTCAACTGCATAGCAGTTATTTGATTGGCCCATTCCTTTATAAAATATTTTATGCTTAGATGATGAACTCCACATAAATT-CAGCCAGGGGAATGCTTCCCTTGGCAATCTCTGGGAGAT i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48814469 637 + 183952662 at-caacaatgagaacagacaatacaggaataacatctcccaagttttgagggagaataacagatgacatgaaattctacaaccaaataaagcataattcaatgggcagcagttagcagaattaagctgtttccggacatctatggagagatttaactcAAAGATGTCACTGTAAATTTGATTTTTGAGATGTAGT-AATGGACACTTGGTAAGGTTATC--GAATTAGTTAAACGATCTTCAAAGCTTAGGTCATGTATCTTCATTAAACACATGGTGCTTTGCATTTACTA-AAGAAGGGCTTCTGCTTTCTCTCCAAATAAATCATTGCGAACTTACCACCCCAAGTG-------------------TAAAAACCTCCTTTATTTCTATTCCTGGTCTCTAGTCCCTGCTTACGTGTATGCATAAATGCATGACACCATGCTTCTCTTTTAGTTATTTATTTCTAGAGATCATGTCTTTGAAAATCATTATATTCCCAGCAACTATTTAGAGTGGTACTAAGTTAACTTGGTTTATGGTGTCAACTGCATAGCAGTTATTTGATTGGCCCATTCGTTTATAAAATATTTTATGCTTAGATGATGAACTCCACATAAATT-CAGCCAGGAGAATGTTTTCCTTGGCAATCTCTGGGAGAT i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54733184 637 + 109391073 ag-caacaatgagaacagacaatacaggaataacatctcccaagctgtgagggagaataacagatgacatgaaattctacgaccaaataaagcataattcaaagggcagcagttaacagaattaagctgtttccagacatCTATGGAGAGATTTAACTCAAAGATGTCACTGTAAATTTGATTATTGAGATGTAGT-AATGGATACTTGGTAAGGTTACT--GAATTAGTTAAACGATCTTCAAAGCTTAGGTCATGTATCTTCATTAAACACACGGTGCTTTGCATTTACTA-AAGAAGGGCTTCTGCTTTCTTTCCAAATAAATCATTGCGGCCTTACCACCCCAAGTG-------------------TAAAAACCTCCTTTATTTCTATTCTTGGTCTCTAGTCCCTGCTTATGTGTATGCATAAATGCATGACACTGTGCTTCTCTTTTAGTTATTTATTTCTAGAGATCATGTCTTTGAAAATCATTATATTCCCAGCAACTATTTAGAGTGGTACTAACTTAACTTGGTTTATGGTGTCAACTGCATAGCAGTTATTTGATTGGCCCATTCCTTTATAAAATATTTTATGCTTAGATGATGAACTCTACATAAATT-CAGCCAGGAGAATGTTTTCCTTGGCAATCTCTGGGAGAT i nomLeu3.chr12 C 0 C 0 s rheMac3.chr6 48590453 637 + 180491593 at-caacaatgagaacagacaatacaggaataacatctcccaagttgtgagggagaataacagatgacatgagattctacaaccaaataaagcgtaattcaaTGGGCAGCTGTTAACAGAATTAAGCTGTTTCTGGACATCTATGGAGAGATTTAACTCAAAGGTGTCACTATAAATTCGATTGTTGAGATGTAGT-AATGGATACTTGGTAAGGTTATT--GAATTAGTTAAAAGATTTTCAAAGCTTAGGTCGTGTATCTTTATTAAACACGTGGTGGTTTGCATTTACTA-AAGAAGGGTTTCTGCTTTCTCTCCAAAGAAATCATTGTGACCTTACCACCCCAAGTG-------------------TAAAAACCTCCCTTATTTCTATTGTTGGTCTCTAGTCCCTGCTTATATGTATGCATAAATGCATGACACCGTACTTCTCTTTTAGTTATTTATTTCTAGAGATCATGTCTTTGAAAATCATTATATTCCCAGCAACTACTTAGAGTGGTACTAAGTTAACTTGGTTTATGGTGTCGACTGCATAGCAGTTATTTGATTGGCCCATTCCTTTATAAAATATTTTATGCTTAGAAGATGAACTCTACATAAATT-CAGCCAAGAGAATGTTTTCCTTGGCAATCTCTGGGAGAT i rheMac3.chr6 C 0 C 0 s macFas5.chr6 49913488 637 + 181584905 at-caacaatgagaacagacaatacaggaataacatctcccaagttgtgagggagaataacagatgacatgagattctacaaccaaataaagcgtaattcaaTGGGCAGCTGTTAACAGAATTAAGCTGTTTCTGGACATCTATGGAGAGATTTAACTCAAAGGTGTCACTATAAATTCGATTGTTGAGATGTAGT-AATGGATACTTGGTAAGGTTATT--GAATTAGTTAAAAGATTTTCAAAGCTTAGGTCGTGTATCTTTATTAAACACGTGGTGGTTTGCATTTACTA-AAGAAGGGTTTCTGCTTTCTCTCCAAAGAAATCATTGTGACCTTACCACCCCAAGTG-------------------TAAAAACCTCCCTTATTTCTATTGTTGGTCTCTAATCCCTGCTTATATGTATGCATAAATGCATGACACCGTACTTCTCTTTTAGTTATTTATTTCTAGAGATCATGTCTTTGAAAATCATTATATTCCCAGCAACTACTTAGAGTGGTACTAAGTTAACTTGGTTTATGGTGTCGACTGCATAGCAGTTATTTGATTGGCCCATTCCTTTATAAAATATTTTATGCTTAGAAGATGAACTCTACATAAATT-CAGCCAAGAGAATGTTTTCCTTGGCAATCTCTGGGAGAT i macFas5.chr6 C 0 C 0 s papAnu2.chr6 46584965 637 + 174439528 AT-CAACAATGAGAACAGACAATACAGGAATAACATCTCCCAAGTTATGAGGGAGAATAACAGATGACATGAGATTCTACAACCAAATAAAGCGTAATTCAATGGGCAGCTGTTAACAGAATTAAGCTGTTTCTGGACATCTATGGAGAGATTTAACTCAAAGGTGTCACTATAAATTCGATTGTTGAGATGTAGT-AATGGATACTTGGTAAGGTTATT--GAATTAGTTAAAAGATTTTCAAAGCTTAGGTCGTGTATCTTTATTAAACACATGGTGGTTTGCATTTACTA-AAGAAGGGTTTCTGCTTTCTCTCCAAAGAAATCATTGTGACCTTACCATCCCAAGTG-------------------TAAAAACCTCCCTTATTTCTATTGTTGGTCTCTAGTCCCTGCTTATATGTATGCATAAATGCATGACACCGTGcttctcttttagttatttatttctagaGATCATGTCTTTGAAAATCATTATATTCCCAGCAACTACTTAGAGTGGTACTAAGTTAACTTGGTTTATGGTGTCGACTGCATAGCAGTCATTTGATTGGCCCATTcctttataaactattttatgcTTAGAAGATGAACTGTACATAAATT-CAGCCAGGAGAATGTTTTCCTTGGCAATCTCTGGGAGAT i papAnu2.chr6 C 0 C 0 s chlSab2.chr4 46927716 634 + 91010382 at-caacaatgagaacagacaatacaggaataacatctcccaagttgtgagggagaataacagatgacatgagattctgcaaccaaataaagcgtaattcaat-ggcagctgttaacagaattaagcattttctggacatCTATGGAGAGATTTAACTCAAAGGTGTCACTGTAAATTCGATTGTTGAGATGTAGT-AATGGATACTTGGTAAGGTTATT--GAATTAGTTAAAAGATTTTCAAAGCTTAGGTCGTGTATCTTTATTAAACACGTGGTGGTTTGCATTTACTA-AAGAAAGGTTTCTGCTTTCTCTCCAAAGAAATCATTGTGACCTTCCCACCCCAAGTG-------------------TAAAAACCTCCTTTATTTCTATTCTTGATCTCTAGTCCCTGCTTATATGTATGCATAAATGCATGACACCGTGCTTCTCTTTTAGTTATTTATTTCTAGAGATCATGTCTTTGAAAATCATTATATTCCCAGCAACTACTTAGAGTGGTACTAAGTTAACTTGGTTTATGGTGTCGACTGCATAGCAGTTATTTGATTGGCCCATTCCTTTATAAAATATTTTATGCTTAGAAGAAGAAC--TACATAAATT-CAGCCAGGAGAATGTTTTCCTTGGCAATCTCTGGGAGAT i chlSab2.chr4 C 0 C 0 s calJac3.chr2 47286828 620 - 204313951 atccagcaatgagaacagacaatacaagaatagtttctcccaagttgtgagggagaaaaacagatgacatgaaatattacaaccagataaagcatcattcaatgggcagctgttaagagaattaagctgtttccagacTTCTATGGAGAGATTTAACTCAAAGATGTCACTGTAAATTTGATTGTTGAGATGTAGT-AATGGATACTTGGTAAGGTTATT--GAATTAGTTAAAAGAGCTTCAAAGCTTAGGTCATGTATCTTCATTAAACACATGGTGCTTTGCGTTTACTA-AAGAAGGGCTTCTGTTTTCCCTCCAAATAAATCACTGCAACCTTACTACCCCAAGTG-----------------AAAAAAAACCTCCTTTATTTCTATTCCTGGTCTCTAGTTACTGCTTATCTGTATGTATAAATGCATGACACAGTGCTTTTCTTTTAGTTATTTATTTCTGGAGATC--------------------ATTTCCACCAGCTATTTAGAGTGGTACTAAGTTAACTTGGTTTATGGTGTGAACTGCATAGCAGTTATTTGATTGGCCCATTCCTTTATAACATATTTTATGCTTAGATGATGAACTCTGCATAAATT-CAGCTAGGAGAATGTTTTCCTTGTCAATCTCTGGGAGAT i calJac3.chr2 C 0 C 0 s canFam3.chr4 23983598 628 - 88276631 ----Gttaacaggaacaggcaataaaagaataatatcttccacattgtgagggaaaataactatcaacctcgagttttacagccaagtaaactgtcattggatagacag--------agattaaagatattaccagatggatatggaaagatttaactcACCAATGCCACTGT-AATTTGATTGTTGAGATGTGCTAAATGGATACCCAATAAGCTTATTCGGAATTACTTACAAGCTCTTCAAAGCTTAGGTCATGTGTCCTCATTGAACAC-------TTTGCACTTGATATATGAAGGAATACTGCCTCATCTCCAAAGAAATCTCTGCAACTTCACCCCCGCGAGTGGAAATGGCAGAGGAAGAAGTGAAAGGC---------TCTAATCTTGGTTTCTATTCCCTGCTTACGTGTATGCATATTTGTACG-CA-TGGGCTTCTCTTTTAGTTA--CAATTCCAGAGACCATCT-TTCAAAACTCTTTATATTTTCACCCCCCATGGAGAGCTGTGCTAAGTTAACTTGGTTAACTATATTGACTGTGTGGCAGTTAGCTGGTTGGTGCATTTCTTTGTAAAATATTTTATTCTTAGATGGAGAGCACTAGATAATTTCCAACTAAGAGAATATTTTCTTTGGCAGTTCCTGGACAAT i canFam3.chr4 C 0 C 0 a score=2830.000000 s hg38.chr1_KI270765v1_alt 119129 4 + 185285 TACA s panTro4.chr5 117741211 4 - 182651097 TACA i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48815106 4 + 183952662 TACA i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54733821 4 + 109391073 TACA i nomLeu3.chr12 C 0 C 0 s canFam3.chr4 23984226 4 - 88276631 TAGA i canFam3.chr4 C 0 I 53 e calJac3.chr2 47287448 0 - 204313951 C e chlSab2.chr4 46928350 0 + 91010382 C e rheMac3.chr6 48591090 0 + 180491593 C e papAnu2.chr6 46585602 0 + 174439528 C e macFas5.chr6 49914125 0 + 181584905 C a score=3861.000000 s hg38.chr1_KI270765v1_alt 119133 8 + 185285 AATGTTCC s panTro4.chr5 117741215 8 - 182651097 AATGTTAC i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48815110 8 + 183952662 AATGTTAC i ponAbe2.chr5 C 0 I 16 s nomLeu3.chr12 54733825 8 + 109391073 AATGTTAC i nomLeu3.chr12 C 0 C 0 e calJac3.chr2 47287448 0 - 204313951 C e chlSab2.chr4 46928350 0 + 91010382 C e rheMac3.chr6 48591090 0 + 180491593 C e canFam3.chr4 23984230 53 - 88276631 I e papAnu2.chr6 46585602 0 + 174439528 C e macFas5.chr6 49914125 0 + 181584905 C a score=3279.000000 s hg38.chr1_KI270765v1_alt 119141 24 + 185285 tttgtt----------ttttttttttttttttga s panTro4.chr5 117741223 34 - 182651097 TTttttgttgttgttgttgttttgttttttatga i panTro4.chr5 C 0 C 0 s nomLeu3.chr12 54733833 23 + 109391073 -ttttt----------ttttttttttttttttga i nomLeu3.chr12 C 0 C 0 e calJac3.chr2 47287448 0 - 204313951 C e chlSab2.chr4 46928350 0 + 91010382 C e rheMac3.chr6 48591090 0 + 180491593 C e ponAbe2.chr5 48815118 16 + 183952662 I e canFam3.chr4 23984230 53 - 88276631 I e papAnu2.chr6 46585602 0 + 174439528 C e macFas5.chr6 49914125 0 + 181584905 C a score=132997.000000 s hg38.chr1_KI270765v1_alt 119165 279 + 185285 gatggagtctcgctctgtctcccaggctggagcccagtggcgcgatctcggctcactgcaagctccacctcctgggttcacgccattctgttgcctcagcctcccgagtagctgggactacaagtgcccgccaccacgcccggctaatttttttgtattttagtagagacagagtttcaccgtgttag-ccaggatggtctcgatctcctgacctcatgatc-----cacaagcctcggcctcccaaagtgttgggattaca-ggcgtgagccaccgtg-cccggcc s panTro4.chr5 117741257 286 - 182651097 gatggagtctcgctctgtctcccaggctggagtccagtggtgcgatctcggctcactgcaagctccaactcccgggttcacaccattctcctgcctcagcctcccgagtagctgggactacaggcacccaccaccacgcccggctaatttttttgtattttagtagagacagggtttcactgtgttaacccaggatggtctcgatctcctgacctcatgatcnnnnnnnnnngcctcggcct-ccaaagtgctgggattacagggcgtgagccaccatgccccggcc i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48815134 279 + 183952662 gatggagtctctctctgtcgcccaggctggagtccagtggcgtgatctcggctcactgcaagctctgccttctgggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggcaccatccaccatgcccggctaatttttttgtattttagtagagacagggtttcaccgtgttag-tcaggatggtctcgatctcctgacctcatgatc-----cgcctgcctcggcctcccaaagtgctaagattata-ggcgtgagccaccatg-cccggcc i ponAbe2.chr5 I 16 C 0 s nomLeu3.chr12 54733856 279 + 109391073 gatggagtctctctctgtcgcctaggctggagtccagtggcaccatctcggctcactgtaagctccacctcccgggttcacaccattctcctgcctcagcctcccgagtagctgggactacaggcgcccaccaccatgcccggctgatttttctgtattttagtagagacagggtttcaccgtgttag-ccaggatggtcccgatctcctgacctcatgatc-----cgcccgcctcggcctcccaaagtgctgggattaca-ggcgtgagccaccgtg-cccagcc i nomLeu3.chr12 C 0 C 0 e calJac3.chr2 47287448 0 - 204313951 C e chlSab2.chr4 46928350 0 + 91010382 C e rheMac3.chr6 48591090 0 + 180491593 C e canFam3.chr4 23984230 53 - 88276631 I e papAnu2.chr6 46585602 0 + 174439528 C e macFas5.chr6 49914125 0 + 181584905 C a score=172952.000000 s hg38.chr1_KI270765v1_alt 119444 57 + 185285 TACAAATGTTACTATTAACTCCTCCTTCTGCTAAGAAATAAACCAAAATAAAATTAT s panTro4.chr5 117741543 57 - 182651097 TACAAATGTTAGTATTAACTCCTCCTTCTGCTAAGAAATAAACCAAAATAAAATTAT i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48815413 57 + 183952662 TACAAATGTTACTATTAACTCCTCCTTCTGCTAAGAAATAAACCAAAATAAAATTAT i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54734135 57 + 109391073 TACAAATGTTACTATTAAGTCCTCCTTCTGCTAAGAAATAAACCAAAATAAAATTAT i nomLeu3.chr12 C 0 C 0 s rheMac3.chr6 48591090 57 + 180491593 TACAAATGTTACTATTAACTCCTCCTTCTGCTAAGACACAAACCAAAATAAAATTAT i rheMac3.chr6 C 0 C 0 s macFas5.chr6 49914125 57 + 181584905 TACAAATGTTACTATTAACTCCTCCTTCTGCTAAGACACAAACCAAAATAAAATTAT i macFas5.chr6 C 0 C 0 s papAnu2.chr6 46585602 57 + 174439528 TACAAATGTTACTATTAACTCCTCCTTCTGCTAAGacacaaaccaaaataaaattat i papAnu2.chr6 C 0 C 0 s chlSab2.chr4 46928350 57 + 91010382 TACAAATGTTACTATTAACTCCTCCTTCTGCTAAGACACAAACCAAAATAAAATTAT i chlSab2.chr4 C 0 C 0 s calJac3.chr2 47287448 57 - 204313951 TAAAAATGTTACTATTGACTCCTCCTTCTGCTAAGAAAGGAAACAAAATAAAATTTT i calJac3.chr2 C 0 C 0 e canFam3.chr4 23984230 53 - 88276631 I a score=1078785.000000 s hg38.chr1_KI270765v1_alt 119501 313 + 185285 TCACAAATATAACTGTTTTGATCATGCTTTCAGATGATATGTAAAGTAGCCCACAGAAGGTAAATAATATTCAGGGGAA-ATAAATTATTACTTAAGAGTGGGTGCTGAGAAAAAGAAATGTGTGAAGTGTGAGGTAGGAAGTATGTG-AGAAAAGCTAGGGCACAGTTGTGTCTTATATTTTTGTTAAAATCTGCCTGTTAAGACTTCCTGATTGGGTAATGGGAATGATACAGTAAAATACTCTTCCTCAG-AGTGTCTGACACCACTGTGATAATTTACTACATAAAAGTACAAGTTACATTATATAAAAA----GA s panTro4.chr5 117741600 317 - 182651097 TCACAAATATAACTGATTTGATCATGCTTTCAGATGATATGTAAGGTAGCCCACAGAAGGTAAATAATATTCAGGGGAA-ACAAATTATTACTTAAGAGTGGGTGCTGAGAAAAAGAAATATGTGAAGCGTGAGGAAGGAAGTATGTG-AAAAAAGCTAGGGCACAGTTGTGTCTTATATTCTTGTTAAAATCTGCCTGTTAAGACTTCCTGATTAGGTAATGAGAATGATACAGTAAAATACTCTTCCTCAG-AGTGTCTCACACCATTGTGATAACTTACTACATAAAAGTACAAGTTACATTACATAAAAAGACTGA i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48815470 317 + 183952662 TCACAAATATAACTGTTTTGATCATGCTTTCAGATGGTATGTAAGGTAGCCCAAAGAAGGTAAATAATATTCAGGGGAA-ACAAATTATTACTTAAGAGTGGGTGCTGAGAAAAAGAAATGTGTGAAGTGTGAGGAAGGAAGTATGTG-AGAAAAGCTAGGGCACAGTTTTGTCTTATATTTTTGTTAAAATCTGCCTGTTAAGACTTCCTGATTGGGTAATGGGTATGATACAGTAAAATACTCTTCCTCAG-AGTGTCTCACACCATTGTGATAACTTACTACATAAAAGTACAAGTTACATTATATAAAAAGACAGA i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54734192 317 + 109391073 TCACAAATATAACTGTTTTGACCATGCTTTCAGATGATATGTAAGGTAGCCCACAGAAGGTAAATAATATTCAGGGGAA-ATAAATTATTACTTAAGAGTGGGTGCTGAGAAAAAGAAATGTGTGAAGTGTGAGGAAGGAAGTATGTG-AGAAAAGCTAGGGCACAGTTGTGTCTTATATTTTTGTTAAAATATGCCTGTTAAGACTTCCTGATTGGGTAATGGGAATGATACAGTAAAATACTCTTCCTCAG-AGTGTCTGACACCATTGTGATAACTTACTACATAAAAGTACAAGTTACATTATATAAAAAGACAGA i nomLeu3.chr12 C 0 C 0 s rheMac3.chr6 48591147 316 + 180491593 TCACAAATATAACTGTTTTGATCATGCTTTCAGATGATATGTAAGGTAGCCCACAGCAGGTAAATAATATTCAGGGGAA-ATAAATTATTACTTAAGAGTGAGTGCTGAGAAAAAGAAATGTGTGAAGTATAAGGAAGGAAGTATGTG-AGAAAAGCTAGGACATAATTGTGTATTATATTTTTGTTAAAATCTGCCTGTTAAGACTTCCTGATTGGGTAATGGGAATGATAT-GTAAAATACTTTTCCTCAG-AGTGTCTGACACCATTGTGATAACTTACTACATAGAAGTACAAGTTGCATTACACAAAAAGACAGA i rheMac3.chr6 C 0 C 0 s macFas5.chr6 49914182 317 + 181584905 TCACAAATATAACTGTTTTGATCATGCTTTCAGATGATATGTAAGGTAGCCCACAGAAGGTAAATAATATTCAGGGGAA-ATAAATTATTACTTAAGAGTGAGTGCTGAGAAAAAGAAATGTGTGAAGTATAAGGAAGGAAGTATGTG-AGAAAAGCTAGGACATAATTGTGTATTATATTTTTGTTAAAATCTGCCTGTTAAGACTTCCTGATTGGGTAATGGGAATGATATAGTAAAATACTCTTCCTCAG-AGTGTCTGACACCATTGTGATAACTTACTACATAGAAGTACAAGTTGCATTACACAAaaagacaga i macFas5.chr6 C 0 C 0 s papAnu2.chr6 46585659 317 + 174439528 tcacaaatATAACTGTTTTGATCATGCTTTCAGATGATATGTAAGGTAGCCCACAGAAGGTAAATAATATTCAGGGGAA-ATAAATTATTACTTAAGAGTGggtgctgagaaaaagaaatgtgtgaagTATAAGGAAGGAAGTATGTG-AGAAAAGCTAGGACATAATtgtgtattatatttttgttaaaatctgCCTGTTAAGACTTCCTGATTGGGTAATGGGAATGATATAGTAAAATACTCTTCCTCAG-AGTGTCTGACACCATTGTGATAACTTACTACATAGAAGTACAAGTTACATTACACAAAAAGACaga i papAnu2.chr6 C 0 C 0 s chlSab2.chr4 46928407 317 + 91010382 TCACAAATATAATTGTTTTGATCATGCTTTTAGATGATATGTAAGGTAGCCCACAGAAGGTAAATAATATTCAGGGGAA-ATAAATTATTACTTAAGAGTGGGTGCTGAGAAAAAGAAATGTGTGAAGTATAAGGAAGGAAGTATGTG-AGAAAAGCTAGGACATAATTGTGTATTATATTTTTGTTAAAATCTGCCTGTTAAGACTTCCTGATTGGGTAATGGGAATGATATAGTAAAATACTCTTCCTCAG-AGTGTCTGACACCATTGTGATAACTTACTACATAGAAGTACAAGTTACATTACACAAAAAGACAGA i chlSab2.chr4 C 0 C 0 s calJac3.chr2 47287505 312 - 204313951 TCACAAATATAACTGTTTTGATCAAGCTTTCAGATGATATGTAAGGTAGCCCACAGAAGGTAAATAATATTCAGGAGAA-A-AAATTATCACTGAAGAATGTGTGCTGAGAAAAAGAAATGTGTGAAGTGTGAAGAAGGAAGTATGTGAAAAAAAGCTAGGGCATAGTTGTGTCTCATATTTTTGTTAAAATCTGCCTGTTAAGACTTCTTGACTGGGTAATGGGTATGATACAGTAAAATACTCTTCCGCAG-AGTGTCCAATACCATCGCAATAATTTACTACATAAAAGTACAAG-----TTATATAAAAAGACAGA i calJac3.chr2 C 0 C 0 s canFam3.chr4 23984283 305 - 88276631 TCATAAATGTAACTATTTTGATCATGCTTTCAGATGGTATATGAGGTAGTCCATAAAAGGCAAATAATATTCAGGAAAATAATAATTATCTCTTAAAAATTGATGCTGAGAAAGAGAAGTGTGCGGCTT-TGAGGA-------ATGTG-AGGAAAGTTTGAGTGTAGATAAATCTTACATTTTTGTTGAAGTTTGTCTGCTAAGAATTTCTGATTGCGTAATGAACAGGACGGCATGAGATGCTCTTCTTCCTCAGGGTCTGGCA-CACAGCAATAACTTCATACA-AAAAGTGAAAGTTACATTATATGAAAAGA---- i canFam3.chr4 I 53 I 3 a score=778795.000000 s hg38.chr1_KI270765v1_alt 119814 282 + 185285 ATggcctggctcagtggctcacgcctataatcccagcactttgggaggctgaggcaggtggatcatctgagatcaggagttcgggaccagcctggccaaaaggatgaaaccctgtctctactaaaaatacaaaa-aattagccaggcatggtggcaggcacctgtaatcccagctactcaaggggcagaggcaggagaatcgcttgaacctgggagacggaggttgcagtgaactgagatcgtgccactgcactccagcctgggcaacaagagtggaaactcc s panTro4.chr5 117741917 280 - 182651097 ATggccttgcttgatggctcacgcctgtaatcccaccacttt-ggaggccaaggcaggt-gatcatctaagatcaggagttcgggaccagcctggccaaaatgatgaaaccctgtctctactaaaaatacaaaa-aattagccaggcgtggtggcaggcacatgtaatcccagctactcaagaggcagaggcaggagaatcgcttgaacctgggagacggaggttgcagtgaactgagatcgtgccgctgcactctagcctgggcaacaagagtggaaactcc i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48815787 281 + 183952662 ATggcctggcttggtggctcacgcctataatcccagcactttgggaggccgaggcaggt-gatcatctgagatcaggagtttgggaccagcctggacaaaatgatgaaaccctgtctctactaaaaatacaaaa-aattagccaggtgtggtggcaggcacctgtaatcccacctactcaagaggcagaggcaggagaatcaattgaacctgggagacagaggttgcagtgaactgagatcgtgccactgcactccagcctaggcaacaagagtggaaacttc i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54734509 282 + 109391073 ATggcctggctcggtggctcacacctataatcccagcactttgggaggccgaggcaggtggatcatctgagatcagaagttcgggaccagcctggccaaaatgatgaaaccctgtctctactaaaaatacaaaa-aattagctaggtgtggtggcagatgcctgtaatcccagctactcaagaggcagaggcaggagaatcacttgaacctgggagatagaggttgcagtgaactgagatcatgccactgcactccagcctgggcaacaagagtagaaactct i nomLeu3.chr12 C 0 C 0 s rheMac3.chr6 48591463 283 + 180491593 ATggccaggcgcggtggctcacacctgtaatccgagcactttgggaggccgaggcaggtagatcatctgaggtcagcagttcgggaccagcctggccaaaatgatgaaaccctgtctctactaaaaatacaaaataaaaatacaggcgtggtggcaggcacctgcaatcccagctactgaggaggctgagtcaggagaatcgcttgaacctgggagatggaggttgcagtgaaccaagatcatgccactgcactccagcctggacaacaagagtggaaactcc i rheMac3.chr6 C 0 I 66 s macFas5.chr6 49914499 283 + 181584905 atggccaggcgcggtggctcacacctgtaatccgagcactttgggaggccgaggcaggtagatcatctgaggtcagcagttcgggaccagcctggccaaaatgatgaaaccctgtctctactaaaaatacaaaataaaaatacaggcgtggtggcaggcacctgcaatcccagctactgaggaggctgagtcaggagaatcgcttgaacctgggagatggaggttgcagtgaaccaagatcatgccactgcactccagcctggacaacaagagtggaaactcc i macFas5.chr6 C 0 C 0 s papAnu2.chr6 46585976 283 + 174439528 atggccaggcgcggtggctcacacctgtaatccgagcactttgggaggccgaggcaggtagatcatctgaggtcagtagttcgggaccagcctggccaaaatgatgaaaccctgtctctactaaaaatataaaataaaaatacaggcgtggtggcaggcacctgcaatcctagctactcaggaggctgagtcagaagaatcgcttgaacctgggagatggaggttgcggtgaaccaagatcatgccactgcactccagcctggacaacaagagtggaaactcc i papAnu2.chr6 C 0 C 0 s chlSab2.chr4 46928724 283 + 91010382 ATggccaggcgcggtggctcacacctgtaatccgaacactttgggaggccgaggcaggtagatcatctgaggtcagtagttcgggaccagcctggccaaaatgatgaagccctgtctctactaaacatacaaaataaaaatacaggtgtggtggcaggcacctgcaatcccagctactcaggaggctgagtcaggagaattgcttgaacctgggagatggaggttgcagtgaaccaagatcatgccactgcactccagcctggacaacaagagtggaaactcc i chlSab2.chr4 C 0 C 0 s calJac3.chr2 47287817 273 - 204313951 ATggcttggcac-atggctcactcctataattccagcactttgggaggtcaaggcaggtgaatcgcctgaggtcaggagttcgagaccagcctagccaatataataaaaccccatctctactaaaaatacaaaaaaactagtcgggagtggtggcaggcg---------ccagttacttaggaggctgaggcaggagaatcgctttaacctgggaggcggagtttgcaatgaggcgagatcacacttctgcactccagcctgggaaacaagagtggaaactcc i calJac3.chr2 C 0 C 0 e canFam3.chr4 23984588 3 - 88276631 I a score=22371.000000 s hg38.chr1_KI270765v1_alt 120096 14 + 185285 gtccccccaaaaaa s panTro4.chr5 117742197 14 - 182651097 atctcaaaaaaaaa i panTro4.chr5 C 0 I 7 s ponAbe2.chr5 48816068 14 + 183952662 atctcaaaaaaaaa i ponAbe2.chr5 C 0 I 18 s nomLeu3.chr12 54734791 14 + 109391073 gtctcaaaaaaaaa i nomLeu3.chr12 C 0 I 14 s macFas5.chr6 49914782 14 + 181584905 atttcaacaacaaa i macFas5.chr6 C 0 I 57 s papAnu2.chr6 46586259 14 + 174439528 atctcaacaacaaa i papAnu2.chr6 C 0 I 60 s chlSab2.chr4 46929007 14 + 91010382 atctcaacaacaac i chlSab2.chr4 C 0 I 48 s calJac3.chr2 47288090 14 - 204313951 atctcaaaaaaaaa i calJac3.chr2 C 0 I 22 e rheMac3.chr6 48591746 66 + 180491593 I e canFam3.chr4 23984588 3 - 88276631 I a score=567382.000000 s hg38.chr1_KI270765v1_alt 120110 181 + 185285 aaTGACTCCAAGAAACTGAGGTTTCCAGA---TGAGGGTTACACAATGTGGATCTAAAAGCAACAGGGAAAGGAAAAGGATTTGGGCCTAGAATGT-GGGG-AATTTTAGATGCTGCAGAAAG---------CCTTCTGGTGTCTTTCTAGAATGGCTGGATTTTGGTTAAGGCAAAGAAGAAGTA---A-----CTTTTCAT s panTro4.chr5 117742218 187 - 182651097 AATGACTCCAAGAAACTGAGGTTTCTAGA---TGAGGGTTACACAATGTGGATCTAAAAGCAGCAGGGAAAGGAAAAGGATTTGGGCCTAGAATGT-GGGGAAATTTTAGATGCTGCAGAAAG---------CCTTCTGGTGTCTTTCTAGAATGGCTGGATTTTGGTTAAGACAAAGAAGAAGTA---ACTTTTCTTTTCAT i panTro4.chr5 I 7 C 0 s ponAbe2.chr5 48816100 182 + 183952662 AATGACTCCAAGAAACTGAGGTTTCTAGA---TGAGGGTTACACAATGTGGATCTAAAAGCAGCAGGGAAAGGAAAAGGATTTGGGCCTAGAATGT-GGGGAAATTTTAGATGCTGCAGAAAG---------CCTTCTGGTGTCTTTCTAGAATGGCTGGATTTTGGTTAAGACAAAGAAGAAGTA---A-----TTTTTCAT i ponAbe2.chr5 I 18 C 0 s nomLeu3.chr12 54734819 182 + 109391073 aaTGACTACAAGAAACTGAGGTTTCTAGT---TGAGGGTTACACAGTGTGGATCTAAAAGTAGCAGGGAAAGGAAAAGGATTTGGGCCTAGAATGT-GGGGAAATTTTTGATGCTGCAGAAAG---------CCTTCTGGTGTCTTTCTAAAATGGCTGGATTTTGGTTAAGACAAAGAAGAAGTA---A-----CTTTTCAT i nomLeu3.chr12 I 14 C 0 s rheMac3.chr6 48591812 188 + 180491593 AATGATTCCAAGAAACTGAGTTTTCTAAA---TGAGGGTTACACAATGTGGATCTAAAAGCAGCAAGGAAAGGAAAAGGATTGGGGCCTAGAGTGT-GGGGAAATTTTAGATGCTGCAGAAAAACTTCTGGTCCTCCTGGTGTCTTTCTAGAATGACTGGATTTTGGTTAAGACA---AATGAGTA---A-----CTTTTCAT i rheMac3.chr6 I 66 C 0 s macFas5.chr6 49914853 188 + 181584905 aaTGATTCCAAGAAACTGAGTTTTCTAGA---TGAGGGTTACACAATGTGGATCTAAAAGCAGCAAGGAAAGGAAAAGGATTGGGGCCTAGAGTGT-GGGGAAATTTTAGATGCTGCAGAAAAACTTCTGGTCCTCCTGGTGTCTTTCTAGAATGACTGGATTTTGGTTAAGACA---AATGAGTA---A-----CTTTTCAT i macFas5.chr6 I 57 C 0 s papAnu2.chr6 46586333 188 + 174439528 aatgaTTCCAAGAAACTGAGTTTTCTAGA---TGAGGGTTACACAATGTGGATCTAAAAGCagcagggaaaggaaaaggattgGGGCCTAGAGTGT-GGGGAAATTTTAGATGCTGCAGAAAACCTTCTGGTCCTTCTGGTGTCTTTCTAGAATGACTGGATTTTGGTTAAGACA---AATGAGTA---A-----CTTTTCAT i papAnu2.chr6 I 60 C 0 s chlSab2.chr4 46929069 180 + 91010382 AATGATTCCAAGAAACTGACTTTTCTAGA---TGAGAGTTAAACAATGTGGATCTAAAAGCAGCAGAGAAAGGAAAAGGATCTGGGCCTAGAATGTGGGGGAAATTTTAGATGCTGCAGAAAA---------CCTTCCGGTGTCTTTCTAGAATGACTGGATTTTGGTTAAGACA---AATGAGTA---A-----CTTTTCAT i chlSab2.chr4 I 48 I 15539 s calJac3.chr2 47288126 188 - 204313951 AAGAACTCCAAGAAACTGAGTTTTATGGAAACTGAAGGTTACACAATGTGGATCTAAAAGCAGCAGGGAAAGGAAAAAGATTTGGGCTTAGAGTCT-GGGGAAATTTTAGGTGCTACAGAAAG---------CTTTCTGATATCTTTCTAGGATGGCTGGATTTTGGTTAAGACAAAGAATAAGAAGATA-----CTTTTCAC i calJac3.chr2 I 22 C 0 s canFam3.chr4 23984591 179 - 88276631 AACGAGTCGAAGAAACTGGACTTTCTAGA---GGAGCGTGGAACCATGTGGATCTGAGAGTGGCAGGGAAAGGGAAAGGATTTGGGTCCCGAGTGT-GGGGAAATAGGAGGTGTTGCAGAAG----------CCTTGTGTTGTCTTTCCAGGAAAGCTGGGTTGAAGAAACGGAAA--AGGAAGGG---A-----CTCTGAAT i canFam3.chr4 I 3 C 0 a score=4500.000000 s hg38.chr1_KI270765v1_alt 120291 1 + 185285 G s panTro4.chr5 117742405 1 - 182651097 G i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48816282 1 + 183952662 G i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54735001 1 + 109391073 G i nomLeu3.chr12 C 0 C 0 s rheMac3.chr6 48592000 1 + 180491593 G i rheMac3.chr6 C 0 I 6968 s macFas5.chr6 49915041 1 + 181584905 G i macFas5.chr6 C 0 I 7377 s papAnu2.chr6 46586521 1 + 174439528 G i papAnu2.chr6 C 0 I 7370 s chlSab2.chr4 46944788 1 + 91010382 G i chlSab2.chr4 I 15539 C 0 s calJac3.chr2 47288314 1 - 204313951 G i calJac3.chr2 C 0 C 0 s canFam3.chr4 23984770 1 - 88276631 G i canFam3.chr4 C 0 C 0 a score=21285.000000 s hg38.chr1_KI270765v1_alt 120292 5 + 185285 GAGAA s panTro4.chr5 117742406 5 - 182651097 GAGAA i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48816283 5 + 183952662 GAGAA i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54735002 5 + 109391073 GAGAA i nomLeu3.chr12 C 0 C 0 s rheMac3.chr6 48598969 5 + 180491593 GAGAA i rheMac3.chr6 I 6968 C 0 s macFas5.chr6 49922419 5 + 181584905 GAGAA i macFas5.chr6 I 7377 C 0 s papAnu2.chr6 46593892 5 + 174439528 GAGAA i papAnu2.chr6 I 7370 C 0 s chlSab2.chr4 46944789 5 + 91010382 GAGAA i chlSab2.chr4 C 0 C 0 s calJac3.chr2 47288315 5 - 204313951 GAGAA i calJac3.chr2 C 0 C 0 s canFam3.chr4 23984771 5 - 88276631 GAGAA i canFam3.chr4 C 0 I 411 a score=8452.000000 s hg38.chr1_KI270765v1_alt 120297 3 + 185285 CAG s panTro4.chr5 117742411 3 - 182651097 CAG i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48816288 3 + 183952662 CAG i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54735007 3 + 109391073 CAG i nomLeu3.chr12 C 0 C 0 s rheMac3.chr6 48598974 3 + 180491593 CAG i rheMac3.chr6 C 0 C 0 s macFas5.chr6 49922424 3 + 181584905 CAG i macFas5.chr6 C 0 C 0 s papAnu2.chr6 46593897 3 + 174439528 CAG i papAnu2.chr6 C 0 C 0 s chlSab2.chr4 46944794 3 + 91010382 CAG i chlSab2.chr4 C 0 C 0 s calJac3.chr2 47288320 3 - 204313951 CGA i calJac3.chr2 C 0 C 0 e canFam3.chr4 23984776 411 - 88276631 I a score=234172.000000 s hg38.chr1_KI270765v1_alt 120300 67 + 185285 TAGCATACAGGAGTGCGGATGGTTTGATCATTTA-------------AGGCAGGGATGTGAGGTTTGATGGAATATGTTG s panTro4.chr5 117742414 67 - 182651097 TAGCATACAGGAGTGTGGATGGTTTGATCATTTA-------------AGGCAGGGATGTGAGGCTTGATGGAATATGTTG i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48816291 67 + 183952662 TAGCATACAGGAATGTGGATGGTTTGATCATTTA-------------AGGCAGGGATGTGAGGTTTGATGGAATATGTTG i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54735010 67 + 109391073 TAGCATACAGGAGTGTGGATGGTTTGATCATTTA-------------AGGCAGGGTTGTGAGGCTTGATGGAATATGTTG i nomLeu3.chr12 C 0 C 0 s rheMac3.chr6 48598977 67 + 180491593 TAGCACACAGGAGTGTGGATGGTTTGATCATTTA-------------AGGCAGGGATGTGAGGCTTGATTAAATATGTTG i rheMac3.chr6 C 0 C 0 s macFas5.chr6 49922427 67 + 181584905 TAGCACACAGGAGTGTGGATGGTTTGATCATTTA-------------AGGCAGGGATGTGAGGCTTGATTAAATATGTTG i macFas5.chr6 C 0 C 0 s papAnu2.chr6 46593900 67 + 174439528 TAGCACACAGGAGTGTGGATGGTTTGATCATTTA-------------AGGCAGGGATGTGAGGCTTGATTAAATATGTTG i papAnu2.chr6 C 0 C 0 s chlSab2.chr4 46944797 66 + 91010382 TAGCACACAGGAGTGTGGATGGTTTGATCA-TTA-------------AGGCAGGGATGTGAGGCTTGATTAAATATGTTG i chlSab2.chr4 C 0 C 0 s calJac3.chr2 47288323 67 - 204313951 TAGCACACAGGAGTGTGGATGGTTTGATCATTTA-------------AGGCAGGGAAGTGAGGCTTGATGGAATATGTTG i calJac3.chr2 C 0 C 0 s canFam3.chr4 23985187 78 - 88276631 TAGTACACAGGAGGGTGGA--GACTGATCAGTTAAGGCTGCTGTGAGAGGCAAGGGTGTGAAGCTTGATGGAATTTTTTG i canFam3.chr4 I 411 N 0 a score=811707.000000 s hg38.chr1_KI270765v1_alt 120367 262 + 185285 Ataacaaagattctttgcttggccaactttagtcaggcttctaaatcttcagctaggctaaactgtgcacttcctcgcaaaatccagcattagcaaagaacactgccaagtttaccaaagaacccctcattctcaatatctgatcaggttcttcattcttcaccattctgcaggtgatgtctgatcaccctggccagtcttcagcaagaa-ttcttttagggcggtttagccagaatctcccttactcctgatgtttcctctt s panTro4.chr5 117742481 262 - 182651097 Ataacaaagattctttgcttggccaactttagtcaggcttctaaatcttcagctaggctaaactgtgcacttcctcgcaaaatccagctttagcaaagaacactgccaagtttaccaaagaacccctcattctcaatatctgatcaggttcttcattcttcaccattctgcaggtgatgtctgatcactctggccagtcttcagcaagaa-ttcttttaggtcagtgtagacagaatctcccttactcctgatgtttcctctt i panTro4.chr5 C 0 C 0 s ponAbe2.chr5 48816358 262 + 183952662 Ataacaaagattctttgcttggctaactttagtcaggcttctaaatcttcagctaggctaaactgtgcacttcctcgcaaaatccagctttagcaaagaacactgccaagtttaccaaagaacccctcattctcaatatctgatcaggttcttcattcttcaccattctgcaggtgatgtctgatcaccctgggcagtcttcagcaagaa-ttcttttaggtcagtgtagacagaatctcccttactcctgatgtttcctctc i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54735077 262 + 109391073 Ataacaaagattctttgcttggccaactttagtcaggcttctaagtcttcagctaggctaaactgtgcacttccttgcaaaatccagctttagcaaagaacactgccaagtttaccaaagaacccctcattttcaatatctgatcaggttcttcattcttcaccattctgcaggtgatgtctgatcaccctggccagtcttcagcaagaa-ttcttttaggtaggtttagccagaatctcccttactcctgatgtttcctctt i nomLeu3.chr12 C 0 C 0 s rheMac3.chr6 48599044 262 + 180491593 Ataacaaagattctttgcttggccaactttagtcaggtttctaaatcttcagctaggctaaactgtgcacttcctcgcaaaatccagcttgagcaaagaacactgccaagtttaccaaagaacccctcatttgcaatatctggtcaggttattcattcttcaccattctgcaggtgatgtctgatcaccctggccagtc-ttatcaagaatttcttttaggtcagtttagtcagaatctcccttactcctgatgtttcctctt i rheMac3.chr6 C 0 C 0 s macFas5.chr6 49922494 263 + 181584905 Ataacaaagattctttgcttggccaactttagtcaggtttctaaatcttcagctaggctaaactgtgcacttcctcgcaaaatccagcttgagcaaagaacactgccaagtttaccaaagaacccctcattcgcaatatctggtcaggttattcattcttcaccattctgcaggtgatgtctgatcaccctggccagtctttagcaagaatttcttttaggtcagtttagtcagaatctcccttactcctgatgtttcctctt i macFas5.chr6 C 0 C 0 s papAnu2.chr6 46593967 263 + 174439528 ATAacaaagattctttgcttggCCAACTTTAGTCAGGTTTCTAAATCTTCAGCTAGGCTAAACTGTGCACTTCCTCGCAAAATCCAGCTTGAGCAAAGAACACTGCCAAGTTTACCAAAGAACCCCTCATTCGCAATATCTGGTCAGGTTATTCATTCTTCACCATTCTGCAGGTgatgtctgatcaccctggccaGTCTTTAGCAAGAATTTCTTTTAGGTCAGTTTAGTCAGAATCTCCCTTActcctgatgtttcctctt i papAnu2.chr6 C 0 C 0 s chlSab2.chr4 46944863 263 + 91010382 Ataacaaagattctttgcttggccaactttagtcaggtttctaaatcttcagctaggttaaactgtgcacttcctcgcaaaatccagcttgagcaaagaacactgccaagtttaccaaagaatctttcattcgcaatatctggtcaggttattcattcttcaccattctgcaggtgatgtctgatcaccctggccagtctttagcaagaatttcttttaggtcagtttagtcagaatctcccttactcctgatgtttcctctt i chlSab2.chr4 C 0 C 0 s calJac3.chr2 47288390 258 - 204313951 Ataacaaagattct----ttggccaattttagtcaggcttctagatcttcagctaggctaaactgtgcacttccttgcaaaatccagctttagcaaagaacactgccaagtttaccaaagaacccctcattctcaatatctgatcaggttcctcgttcttcaccatcctgcaggtaacatctgatcaccctggccggtcttcagcaagaa-ttctttcaggtcggtttagccagaatctcccttactccagatgtttcttctt i calJac3.chr2 C 0 N 0 a score=1724272.000000 s hg38.chr1_KI270765v1_alt 120629 707 + 185285 agtgattttccattcactgacccctgcattgctcctgggctat-aaattcccactt-----ccccatgctgtattcagagttaagcccatctctctccctagctccaagactgtgttgccgtggttcctatatctatggtgatggtcctgaataaagtcttctttactgtgcatttgaagtatcactgaataattttttatttaacaACTATGGTGTTGAAACTCAACTAGGA-CAGATTCATCACTGGATCCTGggcctctcactcagaaccctaaatgcatgcctttgaagtctttgttgtcatttctgactgattagggatccattggtgaatcagattcctgagccattgctccagacaaaagcccgttgatggctaaggacagattttgaatctgaagggatgaatattctctctgaagctggggtagagtcccaggcttcttttgaaagcaatcctctgggcaggaaggtcttcgtgtgggcttcttgttctgagtggtctattctctgagtccctaggctagaagtctcttctttctggctctctttttctgagtgaggggttattccctgattccctgggctacaaattgttcttcctggctctctataaaaccactctgctctttctcttctctctattggatcctgcttctcccatgggagctctgtcacctgaaacccctcttctcaagtctctgctgactat s panTro4.chr5 117742743 707 - 182651097 agtgattttccattcactgacccctgcgttgctcctgggctat-aaattcccactt-----gcccatgctgtattgagagttaagctcatctctctccccagctccaagactgtgttgcagtggttcctatatctatggtgatggtcctgaataaaattttctttactgtgcatttaaagtgtcactgaataattttttctttaacaACTATGGTGTTGAAACTCAAATAGGA-CAGATTCATCACTGGATCCTGggcctctcactcaggaccctaaatacatgcctttgaagcctttgttgtcatttctgactgattagggatccattggtgaatcagattcctgagccattgctccagacaaaagccctttgatggccaaggacagattttgaatcttaagggatgagtattctctctgaagctggggtacagccccaggcttcttttgaaaggaatcctctgggcaggaaggtcttcgtgtgggcttcttgttctgagtgggctattctctgagtccctagactagaagtctcttctttctggctttctttttctgagtgaggggttattccctgattccctggcctataaattgttcttcccagctctctataaaacctctctgctctttctcttctctctattggatcctgcttctcccatgggaactctgtcacctgaaacccctcttctcaagtctctgctgactat i panTro4.chr5 C 0 n 0 s ponAbe2.chr5 48816620 708 + 183952662 agtgattttccattcactgacccctgcattgctcctgggctataaaattcccactt-----gcccatgctgtattcagagttaagcccatctctctccccagctccaagactgtgttgcagtggttcctgtatctatggtgatggtcctgaataaagtcttctttactgtgcatttaaagtatcactgaataattttttctttaacaATTATGGTGTTGAAACTCAAATAGGA-CAGATTCATCACTGGATCCTGggcctctcactcaggaccctaaatgcatgcctttgaagcctttgttgtcatttctgactgattagggatccattggtgaatcagattcctgagccattgctccagacaaaagccctttgatggctaaggacagattttgaatcttaagggatgagtattctctctgaagctggggtagagccccaggcttcttttgaaaggaatcctctgggcaggaaggtctttgtgtgggcttcttgttctgagtgggctattctctgagtccctagactagaagtctcttctttctggctctctttttctgaatgaggggttattccctgattccctggcctacaaattgttcttcctggctctctataaaacctctctgctctttctcttctctgtattggatcctgcttctcccatgggaactctgtcacctgaaacccctcttctcaagtctctgctgactat i ponAbe2.chr5 C 0 C 0 s nomLeu3.chr12 54735339 706 + 109391073 agtgattttccattcactgaccctggcgttgctcctgggctat-aaattcccactt-----gcccatgctgtattcagagttaagcccatctctctccccagctccaagactgtgttgcagtggttcctgtatctatggtgatggtcctgaataaagtcttctttactgtgcatttaaagtatcactgaataattttttctttaataATTATGGTGTTGAAACTCAAATAGGA-CAGATTCATCACTGGATCCTGggcctctcactcaggaccctgaatgcatgcctttgaagcctttgttgtcatttctgactaattagggatccattggtg-atcagattcctgagccattgctacagacaaaagccctttgatggctaaggacagattttgtatcttaagggatgagtattctctctgaagctggggtggagccccaggcttcttttgaaaggaatcctctgggcaggaaggtcttcgtgtgggcttcttgttctgagtgggctattctctgagtccctagactagaagtctcttctttctggctctctttttctaagtgaggggttattccctgattccctgggctacaaattgttcttcccgcctctctataaaacctctctgctctttcccttctctctattggatcctgcttctcccatgggaactctgtcacctgaaacccctcttctcaagtctctgctgactat i nomLeu3.chr12 C 0 C 0 s rheMac3.chr6 48599306 707 + 180491593 agtgattttccattcactgacctctgcattgctcctgggctat-aaattcctgctt-----gcctatgctgtattcagagttaagcccatctctctccccagttccaagactgcgttgcagtgtttcctatatctatggtgatggtcctgaataaagtcttctttactgtgcttttaaagtatcactgaataattttttctgtaacaATTATGGTTTTGAAACTCAAATAGGACCAGATTCATCACTGGATCCTGggcctctcactcaggaccctaaatgcatgcctttgaagcctgtgttgtcatttctgactgattagggattcactggtgaatcagattcctgagccattgctccagacaaaagccttttgacagctaaggacagattttgaatcttaagggatgagtattctctctgaagct-gggtagagtcccaggcttcttttgaaaggaattctctgggcaggaaggtcttcgtgtgggcttcttgttctgagtgggctactctctgagtccctgggttagaagtctcttcttcctggctctctttttctgagtaaggagttattccctgattccctgggctgcaaattgttcttcccggctctttgtaaaacctctctgctctttctcttctctctattggatcctgcttctcccatgggaactctgtcacctgaaaccccttttctcaagtctctgctgactat i rheMac3.chr6 C 0 C 0 s macFas5.chr6 49922757 707 + 181584905 agtgattttccattcactgacctctgcattgctcctgggctat-aaattcctgctt-----gcctatgctgtattcagagttaagcccatctctctccccagttccaagactgcgttgcagtgtttcctatatctatggtgatggtcctgaataaagtcttctttactgtgcttttaaagtatcactgaataattttttctgtaacaATTATGGTGTTGAAACTCAAATAGGACCAGATTCATCACTGGATCCTGggcctctcactcaggaccctaaatgcatgcctttgaagcctgtgttgtcatttctgactgattagggattcactggtgaatcagattcctgagccattgctccagacaaaagccttttgacagctaaggacagattttgaatcttaagggatgagtattctctctgaagct-gggtagagtcccaggcttcttttgaaaggaattctctgggcaggaaggtcttcgtgtgggcttcttgttctgagtgggctactctctgagtccctgggttagaagtctcttcttcttggctctctttttctgagtaaggagttattccctgattccctgggctgcaaattgttcttcccggctctttgtaaaacctctctgctctttctcttctctctattggatcctgcttctcccatgggaactctgtcacctgaaacccctcttctcaagtctctgctgactat i macFas5.chr6 C 0 C 0 s papAnu2.chr6 46594230 712 + 174439528 agtgaTTTTCCATTCACTGACCTCTGCATTGCTCCTGGGCTAT-AAATTCCTGCTTTATAATTCTATGCTGTATTCAGAGTTAAGCCCATCTCTCTCCCCAGTTCCAAGACTGCGTTGCAGTGTTTCCTATATCTATGGTgatggtcctgaataaagtcttctTTACTGTGCTTTTAAAGTatcactgaataattttttctttaacaattatGTTGTTGAAACTCAAATAGGACCAAATTCATCACTGGATCCTGGGCCTCTCACTCAGGACCCTAAATGCATGCCTTtgaatcctttgttgtcatttctgaCTGATTAGGGATTCACTGGTGAATCAGATTCCTGAGCCATTGCTCCAGACAAAAGCCTTTTGACAGCTAAGGACAGATTTTGAATCTTAAGGGATGAGTATTCTCTCTGAAGCT-GGGTAGAGTCCCAGGCTTCTTTTGAAAGGCATTCTCTGGGCAGGAAGGTCTTCGTGTGGGCTTCTTGTTCTGAGTGGGCTACTCTCTGAGTCCCTGGGTTAGAAGTCTCTTCTTCCTGGCTCTCTTTTTCTGAGTGAGGAGTTATTCCCTGATTCCCTGGGCTGCAAATTGTTCTTCCCGGctctctgtaaaacctctctgctctttctcttctctctattGGATCCTGCTTCTCCCATGGGAACTCTGTCACCTGAAACCCCTCTTCTCAAGTCTCTGCTGACTAT i papAnu2.chr6 C 0 C 0 s chlSab2.chr4 46945126 707 + 91010382 agtgattttccattcactgacccctgcattgctcctaggctat-aaattcctgctt-----gcctatgctgtattcagagttaagcccatctctctccccagttccaagactgcgttgcagtgtttcctatatctatggtgatggtcctgaataaagccttctttactgtgcttttaaagtatcactgaataattttttctttaacaATTATGGTGTTGAAACTCAAATAGGACCAGATTCATCACCGGATCCTGggcctctcactcaggaccctaaatgcatgcctttgaagcctttgttgtcatttctgactgattagggattcattggtgaatcagattcctgagccattgctccagacaaaagccttttgatagctaaggacaaattttgaatcttaagggatgagtattgtctctgaagct-gggtagagtcccaggcttcttttgaaaggaattctctgggcaggaaggtcttcgtgtgggcttcttgttctgagtgggctactctctgagttcctgggttagaagtctcttcttcctggccttctttttctgagtgaggagttattccctgattccctgggctgcaaattgttcttcccggctctctgtaaaacttctctgctctttctcttctctctattggatcctgcttctcccatgggaactctgtcacctgaaacccctcttctcaagtctctgctgaccat i chlSab2.chr4 C 0 C 0 a score=10152.000000 s hg38.chr1_KI270765v1_alt 121336 3 + 185285 ttc s panTro4.chr1_GL389091_random 134965 3 + 179278 ttc i panTro4.chr1_GL389091_random I 18803 C 0 s ponAbe2.chr5 48817328 3 + 183952662 ttc i ponAbe2.chr5 C 0 N 0 s nomLeu3.chr12 54736045 3 + 109391073 ttc i nomLeu3.chr12 C 0 N 0 s rheMac3.chr6 48600013 3 + 180491593 ttc i rheMac3.chr6 C 0 N 0 s macFas5.chr6 49923464 3 + 181584905 ttc i macFas5.chr6 C 0 N 0 s papAnu2.chr6 46594942 3 + 174439528 TTC i papAnu2.chr6 C 0 N 0 s chlSab2.chr4 46945833 3 + 91010382 ttc i chlSab2.chr4 C 0 N 0 s calJac3.chr8 20053789 3 + 128169293 ttc i calJac3.chr8 N 0 C 0 a score=7678.000000 s hg38.chr1_KI270765v1_alt 121339 19 + 185285 catagctggtagtcacgac s panTro4.chr1_GL389091_random 134968 19 + 179278 catagctggtagtcactag i panTro4.chr1_GL389091_random C 0 C 0 s nomLeu3.chr17 44118697 19 - 99891981 catagcgggtagtcaccag i nomLeu3.chr17 N 0 C 0 s calJac3.chr8 20053792 19 + 128169293 catagcagctagtcaccag i calJac3.chr8 C 0 C 0 a score=522646.000000 s hg38.chr1_KI270765v1_alt 121358 677 + 185285 gaggagacaactgtgtagggtcaatatttgggcc-aaccaccctgaggaactg---tgagggttagaactggaaattgtcaagagaatccgaacccagctaccatataagagagttcaacttatgttcaatgtgaatgccatggcaatattaaaagg-------------------------------------------taagaattcaATCCATACGTGCTTGAGGTAAATAGGAGAAACCTAGAATTTATGTAAACAGTGAGAAGATTGGATGCGTTTTCCGTCTCATATTTTAATACTAGCAGCATATTATATATGTCAAACCATCAGGCATTCAGAAATACATGCTTATGAAAATTTTTTGCACCATCAGACAAAAGACAAGGGTAGAAGACATTTGTAACCCTATAAACACTAGTAAATTAAAAACAGAAGGACCTTAATGTCCTAACATACCTGTGTTGTGAAAGGCTGCCCTGTGAAATACCGGATTTCTTAAACATATTTTAAAAATCATAGGCGTCAATATTTTTTAGATATCCTTTTAAATTTTCTCTTGTTATTTTACATTGCCTATTTATTTATTTAGTGGCTCTGCTGATTTTGATGTATATCCAAAACTTTATATTTTCTTTAAAAGATGTTTTATACAACTTTACGTAAAATGTTTCTGTATCTTCACATTCTCTCCCTGTCCTTTTGTTTTGCTCTTAtatggtggt s panTro4.chr1_GL389091_random 134987 677 + 179278 gaggagacaactctgcagggtcaatatctcggcc-aaccacactgaggaactg---tgagggttagaactggaaattgtcaagggaatccgaacccagctaccatatgagagagttcaacttatgttcaatgtgaatgccatggcaatattaaaagg-------------------------------------------taagaattcgctccaTACGTGCTTGAGGTAAAGAGGAGAAACCTAGAATTTATGTAAACAGTGAGAAGATTGTATGCGTTTTCCGTCTCATATTTTAATACTAGCAGTATATTATATATGTCAATCCATCAGGCATTCAGAAATACATGCTTATGAAAATTTTTTGCACCATCAGACAAAAGACAAGGGTAGAAGACATTTGTAACCCTATAAACACTAGTAAATTAAAAACAGAAGGACCTTTATGTCCTAACATATCTGTGTTGTGAAAGGCTGCCCTGTGAAATACGGGCTTTCTTAAACATATTTTAAAAATCACAGGTGACAATGTtttttagaaatccatttaaattttctcttgctattttacaatgcctatttatttatttagtggctctgctgattttgatgtatatcctaaactttacattttctttaaaggatgttttatacaactttatgtaaaatgtTTCAGTATCTTCACATTCTCTCCCTGTCCTTTTGTTTTGCTCTTATATGGTGGT i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 5680685 677 + 72422247 gaggaggcaactgtgtagggtcagtatctgggcc-agccacactgaggaactg---tgagggttagaactggaaattgtcaagggaatctgaacccagctaccatatgagagagttcaacttatgttcaatgtgaatgccacggcaatattaaaagg-------------------------------------------taagaatttgctCTATACGTGCTTGAGGTAAATAGGAGAAACCTAGAATTTATGTAAACAGTGAGAAGATAGGATGCGTTTTCTGTCACATATTTTAATACTAGCAGCATATTATGTATGTCAATCCATCAGGCATTCAGAATTACATGCTTATGAAAATTTTTTGCACCATCAGACAAAAGACAAGGGTAGAAGACATTTTTAACCCTATAAACACTAGTAAATTAAAAACACAAGGGCCTTTATGTCCTAATATATCTATGTTGTGAAAGGCTGCCCTGTGAAATACGGGATTTCTTAAACATATTTTAAAAATCATAGGTGTCaatattttttagaaatccatttaaattttctcttgctattttacaatgcctatttatttatttagtggttctgctgattttgatgtatatcctaaactttacattttctttaaagtatgttttatacaactttatgtaaaatgtTACAGTATCTTCACATTCTCTCCCTGTCCTTTTGTTTTGCTCTTATATGGTGGC i ponAbe2.chrUn N 0 C 0 s nomLeu3.chr17 44118716 678 - 99891981 gaggaggcaactgtgtagggtcaatatctgggccgagctgcactgaggaactg---ggagggttacaactggaaattgccaggggaagctgaacccagctaccgcatgagagagttcaacttacattcagtgtgaatgccatgacaacattaaaata-------------------------------------------taagaattcactccaTACGTGCTCGCGGTAAATAGGAGAAACCTAGAACTTATGTAAACAGTGAGAAGATTGGATGCATTTTCCGTCACCTATTTTAATACTAGCAGCATATTATATATGTCAATCCATCAGGCATTCAGAAATACATGCTTATGAAAATTTTTTGCACCATCAGACAAGAGACAAGGATAGAAGACATTTTTAACCCTATACACACTAATAAATTAAAAACAGAAGGACCTTTATGTCCTATAATATCTATGTTGTGAAAGGCTGCTCTGTGAAATATGGGATTTCTTAAACATATTTTAAAAATCATAGGTGTCaatattttttagaaatccatttaaatttcctcttgctattttacagtgcctatttatttatttagtggttctgctgatttcgacgtatatcctaaaatttacattttctttaaagtatgttttatacaactttatgtaaaatgtTTCAGTGTCTTCACATTCTCTCCCCGTTCTTTTCTTTTGCTCTTATGTAGTGGC i nomLeu3.chr17 C 0 C 0 s calJac3.chr8 20053811 709 + 128169293 gaggaagcaactgttcagggtcggtatctgggcc-------actgaggaactgggaggagggttagaactggaaactgtcaagggaaactgaactcaactaccatataagagagttcaacttacattcaatgtgaatgccacggtaacataaaaatgtaagaattTGGCCCGCACTCCGGCTCAAAAAAAGAAAAAAAGTTAAGAATTCACTCCATATGTGCTCAAGGTAAATAGGAGAAACCTAGAATTTATGTAAATAGTGGGAAGATTTGATGCGTATTCAGTCACATGTTTTAATACTAGCAGCATGTTATATATGTCAATCTATCAGACCTTCAGAAATACATGCTTATGAAA---TTTTGCACCACAAGAAAAGAGACA-----AGAAGACATTTTTAACCATAGAAACACTAGTAAATTAAAAACAGAAGGACATTAATGTCCTAATGTATTTATGTTGTGGGAGGCTGCCCTATGAAATACAGGATTTTTTAAACATATATTAAAAATCATAGGTGTCGATATtttttagaaatccatttaaattttctattgctattttacaatgcctatttatttatttagtggttctgctgattttgacatatatcctaaacttcacattttctttaaagtaagttttatacaacttcatgtaaaatgtTTAAATATCTTCACATTCTCTCCCTGTCCTTTTGTTTTGCTCTCATAGGGTAGC i calJac3.chr8 C 0 C 0 a score=359110.000000 s hg38.chr1_KI270765v1_alt 122035 399 + 185285 cctgagtctgttctctggcttttcaagcctagtaagacTAAGACACTAAGGTAAC-TTTGCCCGTGGTTTGGTAATGCCTTCTAAAG---CACATCCTAAGCTCTCGTGCATACAGGGGTCTCCTTTGAG-CT-CTGTGCTTTTG--AGATCCCATACACCTAAATTCCAGTACTCCAAATcagtactgctcagttttagtgactaa-gtttaaaaatgtattttaatagcaagttagtttagtgccctcttgcttctttcttgactgcttgtatacatgtatattcctttaaatgaatcttggaatttatttagaaatattaaattatactaatgaaactgtat-----attgttgtgaattcataag-tgaatttggaaagaatttgtctttatgatgctaaatccttttta s panTro4.chr1_GL389091_random 135664 395 + 179278 CTTGAGTCTTTTCTCTGGCTTTTCAAACCTAGTAAGACTAAGACACTTAAGGAAC-TTTGCCCATGGTTTGGTAATGCCTTCCAAAG---CACATCCTAAGCTCTCGTGCATACAGGGGTCTCCTTTGAG-CT-CTGTGCTTTTG--AGATCCCATATACCTAAATTCCAGTACTCCAAATCAGTACTGCTCAGTTTTA----CTAA-GTTTAAAAATGTATTTTAATAGCAAGTTAGTTTAGTGCACTCTTGCTTCTTTCTTGACTGCTTGTATACATGTATATTCCTTTAAATGAATCTTGGAATGtatttaaaaattttaaattataCTAATGAAACTGTAT-----ACTGTTGtgaattcataag-tgaatttggaaagaatttgtctttatgatagtaagtccttttta i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 5681362 399 + 72422247 CTTGAGTCTTTTCTCTGGCTTTTCAAACCTAGTAAGACTAAGACACTAAAGTAAC-TTTGCCCGTGGTTTGGTAATGCCTTCTAAAG---CACATCCTAAGCTCTCATGCATACAGGGGTCTCCTTTGAG-CT-CTATGCTTTTG--AGATCCCATATACCTAAATTCCAGTACTCCAAATCAGTACTGCTCAGTTTTAGTTACTAA-GTTTAAAAATGTATTTTAATAGCAAGTTAGTTTAGTGCACTCTTGCTTCTTTCTTTACCGCTGATATACATGCATATTCCTTTAAATGAATCTTGGaatttatttaaaaattttaaattataCTAATGAAACTGTAT-----ATTGTTGTGAATTCATAGG-TGAATTTGGAAAGAATTTGTCTTTATGATACTAAATCCTTTTTA i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr17 44119394 368 - 99891981 CTTGAGTCTTTTCTCTGGCTTTTCAAACCTAGTAAAACTAAGACACTAAAGTAAC-TTTTCCTGTGGTTTGGTAATGCCTTCTAAAG---CACATCCTAAGCTCTCGTGCATGCAGGGGTCTCCTTTGAG-CT-TTATTCTATTG--AGATCCCATATACCTAAATTCCAGTAATCCAAATCAGTACTGCTCAGTGTTAGTTATTAA-GTTTAAAAATTTATTTGAATAGCAAGTTAGTTTAGTGAACTCTTGCTTCTTTCTTTACTGCTGGTATACATGTATATTCCTTTAA------------------------------------ACCAATGAAACTGTATCTGGCATTGTTGTGAATTGATAGA-TGAATTTGGAAAGAATTTGGCTTTATGATAATAAATCCTTTTTA i nomLeu3.chr17 C 0 C 0 s calJac3.chr8 20054520 404 + 128169293 CTTGAGTCTTTTCTCTGGCTTTTCAAACCTAGTAAGACTAAGACACTAAAGTAACTTTTGACAGTGGTTTGGCAATGACTTCTAAAG---CACATCCTAAGCTCTCATGCATAGAAGGGTCTATTTTAAGCCT-TTATTCTATTG--GGATCCCATATACCTAAATTCCAGTACTCCAAATCAGGACTGGAAAGCTTTAGTTACTAA-GTTTACAAATTTATTTTAACAGCAAGTTAGTTTGGTGTACTCTTGCTTCTTTATTTACTGCTGGAATACATGTTTATTCCTTTAAATGAATCTTGGGAGt--tttaaaaattttaaattatactaatgaaattgtatctggcattgttgtgaattgatagg-tgaatttggaaagaatttgtccttatgataccaaatccttttta i calJac3.chr8 C 0 C 0 s canFam3.chr18 4080768 401 + 55844845 ccTGA--CTCTCCTCTGATTCCTCAAGCC-AGTAAGACCATAAGAAAGACCTAACTTTTGTCCCTTGTTTGGCAATGTTATCTAAAAAGTTATGTCCTAAACTCACATGTACACAGAGGTCCATTTTTAG-CTATTATTCGATTGCAGGATCCAATATACTTA---------TCCTTAAATCAATGCTTCATAGCTTCAGTTACTAATGCCTAATAATTTATTTTAATAGTTATTGAGTTTGATGTATCCTTTAATTTCTCTTTATTGCTAATATACATATTTATTTTTTGAAATGAATCTTGGGGTTATTTAAAATTTGCTGAGCTATACTGATGAAATTGTCTTCTGGCTTGCAATAAATTGATAAGATGAATTTGGGAAGAATTTGTCCTTATGATACTAGATCttttttt i canFam3.chr18 N 0 C 0 a score=503006.000000 s hg38.chr1_KI270765v1_alt 122434 321 + 185285 ------tccaagaatcatatgtgtctttatatttattccagtctatatttatatcactgagtaaatacatagaaatgtggatacatacagctgtagttacag----atac----aaatatagatatagcctgttaaatctatatctatcccatataacatatatacatgttatatgtgtgtgtt--ta---------tatatatatgtttatGT-CATTAAAGAGCTCCCTTAATATTTTTCTTTTATTTCCCATAAAATTT-ATGTCGAGCTTGAATTTTGCTTGT--------------ATAAACAAGTAAATATTTATACTAGTTTTAATACTGATGTTTA---GACATTGTATCTTATTTT s panTro4.chr1_GL389091_random 136059 322 + 179278 ------tccaagaatcatatatgtccttatatttattccagtctatatttatatcactgagtaaatatgtagaaatgtggatacatacagctatagttatag----atac----aaatatagatataacatgttaaatctatatctatcccatataacatatatacatgttatatgtgtgtgtg--ta---------tatatatatgtttacat-TATTAAAGAGCTCCCTTAAAATTTTTCTTTTATTTCCCATATAATTTTAGGTCGAGCTTGAATTTTCCTTGT--------------ATAAACAAGCTAATATTTATACTAGTTTTAATACTGATGTTTA---GACATTGTATCTTATTTT i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 5681761 318 + 72422247 ------TCCAAGAATCatatgtgcctttatatttattc--gtctatatttatatcactgagtaaatatatagaaatgtagatacatacagctgtagttatag----atag----aaatgtagatataacatattaaatctatatctatcccatataacatatatacattttatatgtgtgtg----ta---------tatatatatgtTTGTGT-TATTAAAGAGCTCCCTTAAAATTTTTCTTTTATTTCCTATATAATTTTAGGTTGAGTTTGAATTTTCCTTGT--------------ATAAACAAGCAAATATTTATACTAGTTTTAATACTGAGGTTTA---GACATTCTATCTTATTTT i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr17 44119762 329 - 99891981 ------TCCAAGAATCATATGTGCC------TTTATTCTAGTCtatatttatatcactgagtaaatatatagaaatgtagatacatatagctatagttatag----atagatataaatatagatataacatgttaaatctatatctatcccatataacatatatatatgttatatgtgtgtata--tatatatatattatatatatGTTTGTGT-TAATAAAGAGCTCCCCTAAAATTTTTCTTTTATTTCCTATATAATTTTAGGTTGATCTTGAATTTTCCTTGT--------------ATAAACATGCAAATATTTATACTAGTTTTAATATTGATGTTTA---GAAATTCTATCTTATTTT i nomLeu3.chr17 C 0 C 0 s macFas5.chr3 124991798 320 - 192294377 ------TCCAAGAATCatatgtgtctttatatttattccagtctatatttacataactgagtaaacatatagaaatgtagatacatatagatatag--atag----atac----aaatatagatataacatgttaaatctgtgtctatcccatgtaacatatatacatgttatatatgtgtgta--tgtgtgtg---tatatatatgtttgtat-tatTAAAGAGCTCCCTTAAAATTTTTCTTTTGTTTCCTATATATTTTTAGGTTGAGCTTGAATTTTCCTTGT--------------ATAAACATGCAAATATTTATACTAGTTTTAATACTGATGTTTA---GATGTTCTATTT------ i macFas5.chr3 N 0 C 0 s chlSab2.chr21 121512404 324 - 127223203 ------TCCAAGAATCatatgtgtctttatatttattccagtctatatttacataactgagtaaacatatagaaatgtagatacatatagat------atag----atac----aaatatagatataacatgttaaatctgtatctatcccatgtaacatatatacatgttatatatgtgtatatgtgtgtgtg---tatatatatGTTTGTGT-TATTAAAGAGCTCCCTTAAAATTTTTCTTTTGTTTCCTATATATTTTTAGGTTGAGCTTGAATTTTCCTTGT--------------ATAAACATGCAAATATTTATACTAGTTTTAATACTGATGTTTA---GATGTTCTATTTTATTTT i chlSab2.chr21 N 0 I 47 s calJac3.chr8 20054924 323 + 128169293 ------accaagaataatatgtgcctttacatttattccaatctatctttaTATAACTGAGTAAATATATAGAAATGTAGATACATATGGATATAGTTATAGAGATATAC----AAATATCGATATAACATGTTAAAACTA----TATCCCATATAAAatatatgcatgttacatgtgtgtatg--tgtgtata---tatatatgtgtgtgtgtGTATTAAAGAGCTCCCTTAAAATTCTT------TTTCTTATGTGTTTTTAGGTTGAGCTTGAATTTTCGTTGT--------------ATAAAAATGCAAATGTTTATACCAGTTTTAATACTGATGTTTA---GACCTTCTATTTTATTTT i calJac3.chr8 C 0 C 0 s canFam3.chr18 4081169 288 + 55844845 ttttttttttttaatCATCTGTGCCTTTCTATTGATTTAGGTCTATTCTGATATGCCTGAGTAGA----TAGAAATATTGATAA--------------ACAG----ATAA----AGATGAAGCTATAATAAGTTAAAATATTCTCTTTC-------------------------------------TC---------TCTTTCTATCTTTAAGG-GG--AAATAACTACCTCAAT-TTTTGTTCGCATTTCCTATAAATATTTAGGTTAAGTTTGAATTTTCCTATTTTAGAATTATAATGATATAAACCCAAATATTTATACCAGCTTTAATACCAATGATTGTATGACTGTATTTTTTATTT- i canFam3.chr18 C 0 C 0 a score=8166.000000 s hg38.chr1_KI270765v1_alt 122755 9 + 185285 AGTGCTGAA s panTro4.chr1_GL389091_random 136381 9 + 179278 AGCATTGAG i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 5682079 9 + 72422247 AGCATTGAA i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr17 44120091 9 - 99891981 AGCATTGAA i nomLeu3.chr17 C 0 C 0 s calJac3.chr8 20055247 9 + 128169293 AGCATTGAC i calJac3.chr8 C 0 C 0 s canFam3.chr18 4081457 9 + 55844845 ACCATTGaa i canFam3.chr18 C 0 C 0 e chlSab2.chr21 121512728 47 - 127223203 I e macFas5.chr3 124992118 0 - 192294377 C a score=50965.000000 s hg38.chr1_KI270765v1_alt 122764 52 + 185285 TATTTTCACAATTATTATAAATATC--------------------------------------------------ATCTAATAATAA------TAATGTACCTGATAA s panTro4.chr1_GL389091_random 136390 52 + 179278 TATTTTCACaattattataaatatt--------------------------------------------------atctaatattaa------taatGTACCTGttaa i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 5682088 52 + 72422247 TATTTTCACaattattataaatatt--------------------------------------------------atctaatattaa------taatGGAACTGttaa i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr17 44120100 49 - 99891981 TATATTCACAATTATTATAAATATT--------------------------------------------------ATCTAA---TAA------TAATGTAACTGTTAA i nomLeu3.chr17 C 0 C 0 s macFas5.chr3 124992118 101 - 192294377 TATTTTCACAATTATTATAAATATTATCTAATATTAATAATGTACTTTTACATTATTTTCACAATTATTATAATTATCTAATATTAA------TAATGTAACTG-TAA i macFas5.chr3 C 0 C 0 s chlSab2.chr21 121512775 48 - 127223203 TATTTTCACAATTATTATAAATATT-----------------------------------------------------TAATATTAA------TAATATAACTG-TAA i chlSab2.chr21 I 47 C 0 s calJac3.chr8 20055256 53 + 128169293 -TTTTTCATAATTATTATAAATGTT-----------------------------------------------ACGATCTAATATTAA------TGATGCAACta-tta i calJac3.chr8 C 0 C 0 s canFam3.chr18 4081466 52 + 55844845 tatttttat--ttattttaatttCC---------------------------------------------TTTATATATGATAATAAACTATGTGATGT--------- i canFam3.chr18 C 0 I 131 a score=122820.000000 s hg38.chr1_KI270765v1_alt 122816 81 + 185285 AAATATTTAAAATTTTACCT-----------TTGAATTATTTTATTGTTGAATTAAAATTCCTTTAA-TATGATAGTCAATTTCTGTTTTATG s panTro4.chr1_GL389091_random 136442 81 + 179278 aaatatttaaaattttaCCT-----------TTGAATTATTTTATTGTTGAATTAAAATTCCTTTAA-TATGATAGTCAATTTCTATTTTATG i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 5682140 82 + 72422247 aaatatttaaaattttaCCT-----------TTGAATTATTTTATTGTTGAATTTAAATTCCTTTAAGTATGATAGTAAATTTCTATTTTATG i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr17 44120149 82 - 99891981 AAATATGTAAAATTTTACCA-----------TTGAATTATTTTATTGTCGAATTTAAATTCCTTTAAGTATGATAGTAAATTTGTATTTTATG i nomLeu3.chr17 C 0 C 0 s macFas5.chr3 124992219 82 - 192294377 AAATATTTAAAATTTTACCA-----------TTGAATTATTTTATTGTTGAATTTAAATTCTTTTACATATGATAGTAAATTTGTATTTTATG i macFas5.chr3 C 0 C 0 s chlSab2.chr21 121512823 82 - 127223203 AAATATTTAAAATTTTACCA-----------TTGAATTATTTTATTGTTGAATTTAAATTCTTTTACATATGATAGTAAATTTATATTTTATG i chlSab2.chr21 C 0 C 0 s calJac3.chr8 20055309 90 + 128169293 aaatatttaaaattttaCCATTATTTAATCGTTGAATTATTTAATTCTTGAATTTAAATTCCTTTAAGTATAATA---AATTTGAATTTTATA i calJac3.chr8 C 0 C 0 e canFam3.chr18 4081518 131 + 55844845 I a score=217733.000000 s hg38.chr1_KI270765v1_alt 122897 133 + 185285 CTTTCTCTATGCATATGCAAATTAATGTATCCTCTTCT----CTGTCTCTATGTAGT-----------AACATATGAAAATCAGGCCTCTCTTCTTCTAATGGACATACACATGTT-----------------TGCATATAGAATATCAGACTCTTTATAGCATT s panTro4.chr1_GL389091_random 136523 133 + 179278 GTTCCTCTATGCATATACAAATTAATCGATCCACTTCT----CTATCTCTATGTAGT-----------AACATATGAAAATCAGGCCTCTCTTCTTCTAATGGACATACACATGAT-----------------TGCATATAGAATATCAGACCCTTTATAGCATT i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 5682222 126 + 72422247 CTTTCTCCATGC-------AATTAATCTATCCACTTCT----CTATCCCTATGTAGT-----------AACATATGAAAATTAGGCCTCTCTTCTTCTAATGGACATACACATGTT-----------------TGCATATAGAATATCAGACTCTTTATAGCATT i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr17 44120231 133 - 99891981 CTTTCTCTATGCATATGCAAATTAATCTACCTACTTCT----CTATCTCTATGTAGT-----------AACATATGGAAATCAGGCCTCTCTTCTCCTAATAGACATACACATGTT-----------------TGCATATAGAATATCAGACTCTTTATAGCATT i nomLeu3.chr17 C 0 C 0 s macFas5.chr3 124992301 131 - 192294377 CTTTCTCTATGCATATGCAAATTAATCTATCCACTTCT----CTATCTCTATGTAGT-----------AACATATGAAAATGAGACCTCTTTTCTTCTAATAGACATACACGT--T-----------------TGTTTATAGAATATTGGACTCTTTATAGCATT i macFas5.chr3 C 0 C 0 s chlSab2.chr21 121512905 131 - 127223203 CTTTATCTATGCATATGCAAATTAATCTATCCACTTCT----CTATCTCTATGTAGT-----------AACATATGAAAATGAGACCTCTTTTCTTCTAATAGACATACACAT--T-----------------TGCTTATAGAACATTGGACTCTTTATAGCATT i chlSab2.chr21 C 0 C 0 s calJac3.chr8 20055399 137 + 128169293 CTGACTCTGTGCATATGAAAATTAATCTATTCACTTCTTGAACAATCTCTATGTAGT-----------AACATATGAATATGAGAGCTCTCTTCTTCTAATAGGCATATATATGTT-----------------TGCATATGGAATATCAAACTCGTTATGGCATT i calJac3.chr8 C 0 C 0 s canFam3.chr18 4081649 161 + 55844845 ttctccctctgcctgtgtctctgcctctctctctctct----ctctctctgtgtgactatcataaataaaaaaaaaaaaaaTGTGTCTCTCTCCCTCTCTTAGACATATATTTCTTAGACATAAATGTGTATATATGTATAAAATATCAGACTCTTTATAGCTTT i canFam3.chr18 I 131 C 0 a score=187659.000000 s hg38.chr1_KI270765v1_alt 123030 70 + 185285 TAAAACCTTTAAAGACATGAATATTGCCTTTTAACAAACATATTTT-AGCATGTACTGAGAATCCCCTATT s panTro4.chr1_GL389091_random 136656 70 + 179278 TAAAATCTGTAAAGACATGAATATTGCCTTTTAACGAATATATTTT-AGCATGTACTGAGAATCCCCTATT i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 5682348 70 + 72422247 TAAAATCTTTAAAGACATGAATATTACCTTTCAACAAATATATTTT-AGCATGTACTGAGAATCCCCTATT i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr17 44120364 70 - 99891981 TAAAATCTTTAAAGACatgaatattaccttttaacaaatatatttt-agcatgtactgagaatcccctatt i nomLeu3.chr17 C 0 C 0 s rheMac3.chr3 124541007 70 - 198365852 Taaaatctttaaatacatgaatattaccttttaacaaatatatttt-agcatgtactgagaatctcctatt i rheMac3.chr3 N 0 C 0 s macFas5.chr3 124992432 70 - 192294377 TAAAATCTTTAAATACATGAATATTACCTTTTAACAAATATATTTT-AGCATGTACTGAGAATCTCCTATT i macFas5.chr3 C 0 C 0 s chlSab2.chr21 121513036 70 - 127223203 TAAAATCTTTAAATACACGAATATTACCTTTTAACAAATATATTTT-AGCATGTACTGAGAATCTCCTATT i chlSab2.chr21 C 0 C 0 s calJac3.chr8 20055536 70 + 128169293 TAAAATCATTAAAGACATGAATATAACCCTTTAACAAAAATGCTTT-AGCATGTACTTAGAATCCTCTAtt i calJac3.chr8 C 0 I 306 s canFam3.chr18 4081810 70 + 55844845 TATTACCCTTAAAGACATGAATATAACA-TGCAATAAATATACTTTCAGCATATATTGAGAATCTCCTATT i canFam3.chr18 C 0 C 0 a score=707324.000000 s hg38.chr1_KI270765v1_alt 123100 337 + 185285 TATTTTTAATTTGGGCTAATCAATACGATTATTAATATTACTGGATTACCAAATTTGGAAACA-------------------CACTTTCATCCCGAAGGTGGATAtttg----tttttttttttttttttGCCAATTTCTTGTCTTACTGTTTCAAATATTGTTGGATATTA-TTTGTATTTTATTTGGCAT-----TTTAGTATCAACATTTGTAATTGAGGT---ACTCT--ACATATTTTTTCATCAATATCTGGTGGGTTTCATAGTTACTGCTATATTGG-ATTTGTAGTAGACATTGACAAAA----ATTATTCCTGTATGTTTTATAGCTGTAtgaaggaaactaatatattttacc----cctaaatatatt s panTro4.chr1_GL389091_random 136726 341 + 179278 TATTTTTCATTTGGGCTAATCAATATGATTATTAATATTATTGGATTACCAAATTTAGAAACA-------------------CATTTTCATCCCCAAGGTGGACATCTGGttttttttttttttttttttGCCAATTTCTTGTCTTACTGTTTCAAATGTTGTTGGATATTA-TTTTTATTTTATTTGGCCT-----TTTAGTATCAACATTTGTAATTGAGGT---ACTCT--ACATATTTTTTCTTCAATATCTCGTGGGTTTTATAATTACTGCTATATTTG-ATTTGTAGTAGACATTGACAAAA----ATTATTCCTGTATGTTTTATAGCTGTAtgagggaaactaatatattttacc----cctaaatatatt i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 5682418 286 + 72422247 TATTTTTTATTTGGGCTAATCAATACGATTATTAATATTATTGGATTACCAAATTTAGAATCA-------------------CACTTTCATCCCCAAGGTGGATATTTG---------TTTTATTTTTTTGTCAATTTCTTGTCTTACTGTTTCAAATATTGTTGGATATTA-TTTTTATTTTATTTGGCAT-----TTTAGTGTCAATATTTGTAAGTGATGA---ACTCT--ACTTATTTTTTCTTCAGTATCTGGTGGGTTTTATAATTACTGCT-TATTGGAATTTGAGGTGAAAATTGACAAAA----ATTATTCCCG---GTTTTGT----------------------------------------------- i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr17 44120434 328 - 99891981 tattttttatttgggctaatcaatatgattattaatattattggattaccaaatttggaatca-------------------cactttcatccccaaggtggata-------------ttttatttttttgctaatttcttgtcttactgtttcaaatattgttggagatta-tttttattttatttggcat-----tttagtatcaatgtttgtaagtgatgt---actct--acatattatttcttcaatctctggtgggttttataattactgctatattgg-atttgtaGTAGACATTGACACAA----ATTATTTCTTTATGTTTCATAGCTGTAtgaaggaaaccaatatattttacc----ccaaaatatatt i nomLeu3.chr17 C 0 C 0 s rheMac3.chr3 124541077 332 - 198365852 tattttttatttggtctaatcaatatgattattaatattattggattaccaaatttggaatca-------------------cactttcatccccaaggtggatatttg---------ctttattgttttg-cagtttcttgtcttactgtttcaaatattgtcagagattatttttttttttatttggcat-----tttagtatcaatatttgtaagtgagat---actct--acatattttttcttcaatatctggtggattttataattactgctatattgg-ATCTGTAGTAGATATTGACAAAA----ATTATTTCTTTATGTTTTATAGCTGTAtgaaggaaatcaacatattttacc----ccaaaatatgtt i rheMac3.chr3 C 0 C 0 s macFas5.chr3 124992502 331 - 192294377 TATTTTTTATTTGGTCTAATCAATATGATTATTAATATTATTGGATTACCAAATTTGGAATCA-------------------CACTTTCATCCCCAAGGTGGATATTTG---------CTTTATTGTTTTG-CAGTTTCTTGTCTTACTGTTTCAAATATTGTCGGAGATTA-TTTTTATTTTATTTGGCAT-----TTTAGTATCAATATTTGTAAGTGAGAT---ACTCT--ACATATTTTTTCTTCAATATCTGGTGGATTTTATAATTACTGCTATATTGG-ATCTGTAGTAGATATTGACAAAA----ATTATTTCTTTATGTTTTATAGCTGTAtgaaggaaatcaacatattttacc----ccaaaatatgtt i macFas5.chr3 C 0 C 0 s chlSab2.chr21 121513106 327 - 127223203 TATTTTTTATTTGGTCTAatgaatatgattattaatatgattggattaCCAAATTTGGAATCA-------------------CACTTTCATCCCCAAGGTGGATATTTG---------TTTTATTGTTTTG-CAGTTTCTTGTCTTACTGTTTCAAATACTGTTGGAGATTA-TTTTTATTTTATTTGGCAT-----TTTAATATCAATATTT----GTGAGAT---ACTCT--ACATATTTTTTCTTCAATATCTGGTGGGTTTTGTAATTACTGCTGTATTGG-ATCTGTAGTAGATATTGACAAAA----ATTATTTCTCTATGTTTTATAGCTGTAtgaaggaaaccaatatattttacc----ccaaaatatatt i chlSab2.chr21 C 0 C 0 s calJac3.chr8 20055912 350 + 128169293 TATTTTTTATTTTGTATAATCAATACGATTGTTAATTTTATTGGATTTCAAAATTTGGATGAAAAATTTGGAAATTTTTATCCACTTTCATCCCCAAGGTGGATATTTA---------AT---TTTTTTTGCTAATTTCTTGTATTACTGCTTCAAATATTGTTGGAAATTA-TTTTTATTTTATTTGGCATTTTAGTTTAGTATCAATATTTGTAAGTGATGT---ACTCT--ACATATTTTTTCTTCAATATCTGCTGGGTTTT---ATTACTGCTATACTGG-ATTTGTAGAAGATATTAACAAAA----ATTATATGTCTATGTTTTATAGCTGTAtgaagaaaaccaatatatttcacc----ccaaaaaatatt i calJac3.chr8 I 306 C 0 s canFam3.chr18 4081880 320 + 55844845 ----TTTTATCTATTCTAATTAATAAGGTTATTTATATCATTTG--------ATTCAGAATTA-------------------CATTTGAAT-TCAAAGGTGAAAATTTG---------CTTAATAT------TGCTTTTTTGTATGGATGTTTCAAATACTGTTGTAGATTA-C-----TTTTGTTTGGCAT-----TTTTGTATAAATATTTATAAGTCATATTGCACTCTACACATATATTTTTTATAATATCCGTTACATTTTATAATTACTGCAATATTGG-ATTTATAGAAGGAATTAGCAAAAAAATATTATTTCTCTATGTTCTCTAAGCATACAACCAAAAAT-ATATACATTACCTGATTCTTAATATCTT i canFam3.chr18 C 0 I 1320 a score=45631.000000 s hg38.chr1_KI270765v1_alt 123437 34 + 185285 tccttgatatatttcaaaatggctattgagaag-g s panTro4.chr1_GL389091_random 137067 34 + 179278 tccttggtatatttcaaaatggctattgagaag-g i panTro4.chr1_GL389091_random C 0 C 0 s nomLeu3.chr17 44120762 34 - 99891981 tccttgatatatttcaaaatggctattcagaag-g i nomLeu3.chr17 C 0 C 0 s rheMac3.chr3 124541409 32 - 198365852 tccttgatatatttc-agatggctattcagagg-- i rheMac3.chr3 C 0 C 0 s macFas5.chr3 124992833 32 - 192294377 tccttgatatatttc-aaatggctattcagagg-- i macFas5.chr3 C 0 C 0 s chlSab2.chr21 121513433 33 - 127223203 tccttgatatatttc-aaatggctattcagaagg- i chlSab2.chr21 C 0 I 18 s calJac3.chr8 20056262 34 + 128169293 tccttgacatatttcaaaatggctattcagaag-g i calJac3.chr8 C 0 C 0 e ponAbe2.chrUn 5682704 0 + 72422247 C e canFam3.chr18 4082200 1320 + 55844845 I a score=13271.000000 s hg38.chr1_KI270765v1_alt 123471 13 + 185285 gct------------------------------ggaaaagcaa s panTro4.chr1_GL389091_random 137101 13 + 179278 gct------------------------------ggaaatgcaa i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 5682704 42 + 72422247 -TTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAAAGCAA i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr17 44120796 13 - 99891981 gct------------------------------ggaaatgcaa i nomLeu3.chr17 C 0 C 0 s rheMac3.chr3 124541441 13 - 198365852 gct------------------------------ggaaatgcaa i rheMac3.chr3 C 0 I 338 s macFas5.chr3 124992865 13 - 192294377 gct------------------------------ggaaatgcaa i macFas5.chr3 C 0 C 0 s calJac3.chr8 20056296 13 + 128169293 gct------------------------------ggaaatgcaa i calJac3.chr8 C 0 C 0 e chlSab2.chr21 121513466 18 - 127223203 I e canFam3.chr18 4082200 1320 + 55844845 I a score=724.000000 s hg38.chr1_KI270765v1_alt 123484 5 + 185285 tgtta s panTro4.chr1_GL389091_random 137114 5 + 179278 agtta i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 5682746 5 + 72422247 ACACA i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr17 44120809 5 - 99891981 aaata i nomLeu3.chr17 C 0 C 0 s macFas5.chr3 124992878 5 - 192294377 aaaaa i macFas5.chr3 C 0 C 0 s calJac3.chr8 20056309 5 + 128169293 aaata i calJac3.chr8 C 0 C 0 e chlSab2.chr21 121513466 18 - 127223203 I e rheMac3.chr3 124541454 338 - 198365852 I e canFam3.chr18 4082200 1320 + 55844845 I a score=10311.000000 s hg38.chr1_KI270765v1_alt 123489 5 + 185285 gctgc s panTro4.chr1_GL389091_random 137119 5 + 179278 gctgc i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 5682751 5 + 72422247 Gctgc i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr17 44120814 5 - 99891981 gctgc i nomLeu3.chr17 C 0 C 0 s macFas5.chr3 124992883 5 - 192294377 gctgc i macFas5.chr3 C 0 C 0 s chlSab2.chr21 121513484 5 - 127223203 gctgc i chlSab2.chr21 I 18 C 0 s calJac3.chr8 20056314 5 + 128169293 gctgc i calJac3.chr8 C 0 C 0 e rheMac3.chr3 124541454 338 - 198365852 I e canFam3.chr18 4082200 1320 + 55844845 I a score=15325.000000 s hg38.chr1_KI270765v1_alt 123494 7 + 185285 aaagctg s panTro4.chr1_GL389091_random 137124 7 + 179278 aaagctg i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 5682756 7 + 72422247 aaagctg i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr17 44120819 7 - 99891981 aaagctg i nomLeu3.chr17 C 0 C 0 s rheMac3.chr3 124541792 7 - 198365852 aaagcta i rheMac3.chr3 I 338 C 0 s macFas5.chr3 124992888 7 - 192294377 aaagctg i macFas5.chr3 C 0 I 328 s chlSab2.chr21 121513489 7 - 127223203 aaagctg i chlSab2.chr21 C 0 C 0 s calJac3.chr8 20056319 7 + 128169293 aaaactc i calJac3.chr8 C 0 C 0 e canFam3.chr18 4082200 1320 + 55844845 I a score=553321.000000 s hg38.chr1_KI270765v1_alt 123501 284 + 185285 tcttggggagatttgcatcggtagagaatctgccctgatgcagccaggttttctctgaggtctgcccccttgtctggatctaggaaaggttaactgagaggct-aagtctccaaaggtctgaaagaaaca------ttttctttctattctctctgaggactactcccagtgaggttccacctatataataagtccactgttgctagccagggtcgttttctcacataacc----tTTTTCTTTCttttccctgtgatccaagaccccattt-ttctgtaaacttcatgtggtaga s panTro4.chr1_GL389091_random 137131 284 + 179278 tcttggggagatttgcatcggtagagaatctgccttgatgcagccaggctttctctgaggtctgcacccttgtctggatctaggaaaatttaactgagagtctgaggtctccaaaggtctgaaagaaaca------ttttctgtctattctctctgaggactgctcccagtgaggttccacctaggtaataagtccactgctgctagccagggtcattttctcacataacc-----tttccttttttttccctgtgatccaagaccccattc-ttttgtaaacttcatgtggtaga i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 5682763 290 + 72422247 tcttggggagatttgcatcagtagagaatctgccttgatgcagccaggctttctctgaggtctgcccccttgtctggatctaggaaaggttaactgagagtctgaggtctccaaaggtctgaaagaaaca------ttttctgtctattctctctgaggactgctcccagtgaggtttcaccgacgtaataagtccactgttggtagctagggtccttttctcacataactttttttttttttttttttccctgtgatccaagaccccattctttctgtaaacttcatgtggtaga i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr17 44120826 269 - 99891981 tcttggggagatttgtatcagtagagaatctgctttgatgcagccaggctttctctgaggtctgcccccttggctggatctaggaaaggttaactgagagtctgaggtctccgaaggtctgaaagaaaca------ttttctgtctattctctcggagggctgctcccagtgaggttt-----------------cactgttgctagccagggtctttttctcacataact----ttttttttttttccccctgtgatccaagcccctattctttctgtaaactcgatgtggtcaa i nomLeu3.chr17 C 0 C 0 s rheMac3.chr3 124541799 295 - 198365852 tctcagggagatttgcatctatagagaatctgccttgatgcagccaggttttctctgaggtctgcccccttgtctggatctaggaaaagttaactgagagtctgagacctccataggtctgagagaaacattttctttttctatctgttctctccgagggccactcccagtgaagtttcacctatgtaacaagaccactgttactagccaaggtccttttctctcataatc-tttttttttttttttttttttgtgatccaagtccccattctttctgtaaactcagtatggtaga i rheMac3.chr3 C 0 C 0 s macFas5.chr3 124993223 292 - 192294377 tctcagggagatttgcatctatagagaatctgccttgatgcagccaggttttctctgaggtctgcccccttgtctggatctaggaaaagttaactgagagtctgagacctccataggtctgagagaaacattttctttttctatctgttctctccgagggccactcccagtgaagtttcacctatgtaacaagaccactgttactagccaaggtccttttctctcataatc----ttttttttttttttttctgtgatccaagtccccattctttctgtaaactcagtatggtaga i macFas5.chr3 I 328 C 0 s chlSab2.chr21 121513496 280 - 127223203 tctcagggagatttccatctgtagagaatctgccttgatgcagccaggttttctctgaggtctgcccccttgtctggatctaggaaaagttaactgagagtctgagacctccaaaggtctgagataaaca------ttttgtatctgttctctctgagggccacttccagtgaagtttcacctatgtaacaagaccactgttgctagccagggtccttttgtctcataatc----------ttttttttttctgtgatccaagtccccaatctttctataaactcaatgtggtaga i chlSab2.chr21 C 0 C 0 s calJac3.chr8 20056326 257 + 128169293 tcttggggagatttgtacctgtagagaatctggtttgatgcacccaggctttctctgaggtctgtccccttgtctggatctaggaaaggtaaactgagagtctgaagcctctaaaggtctgaaagaaaca------gtttctgttt-----------------ctcccagtgagatttcatctacgtaacaagaccactgttgctagtcagggtccttttct------acc----------ttttttttcccggtgatctaagtccccattctttctgtaacttcagcgtggtaga i calJac3.chr8 C 0 C 0 e canFam3.chr18 4082200 1320 + 55844845 I a score=2783138.000000 s hg38.chr1_KI270765v1_alt 123785 947 + 185285 taagcttctgcacgcatcgtgtg-------actgggtcttcgttctaagggttccagtgtacacacattacagaaacctgcatgccttttctactctttatctgcctcctattag-tgattttcagggagacttcagaagacaaaagggacattctcctttagccTATTCTCAGAC-CAATTCCCCCAACATTTAACTGATTCCTAATAGCTTAAAATCACTTTGAAAAATCCATATATTTATAACCTTTTCTTCCCTCTATGATTTCTGGTCAGCTTGGGTTTTGTTTTTCATTCCATTTACTTCATCCTCGAAAAGATCTATTTTATGTCTATTTATTCTCATTTATGGACATtgagaaaagaaaataactttcatgtgagaaatgcaagtcctttgaaataatcaggcccagagagatattcaaatgacac-agcagttctgtcctgctcctctttgagctgtgtgttcatctaggctgcttgctgttgccacagtagctataaattaaccaataaggccacaccagacactataatccacaccccataatagtgtaacagtgtgtagccagtcactaataaatgttatttccataagccaatgagaatttgtgacaaacctctttgcgtcatcacacttctggacccttttttgcctttaagtaactgcttgttgcaaagctccaaagggagttcacatccaaggatatttgggtctgtttcttccaggcag-ctgtcctcactgtggctcaagtaaactctttgaattacattttgtgcttcaGCTCCTTCCACTTAGATTAACAACATGGATTTGTGTCACCATGTACAGCAATTAAAATGTTTACACTTTTCCCCTCGAGAGCACTGATGTGTTTTCCTGAGCACTTGGAATAGCTACGTAGTGTTTCCTGTCTAGATTATggtttctcaaccttggtgctacttaccttt s panTro4.chr1_GL389091_random 137415 947 + 179278 taagcttctgcacgcatcgtgtg-------tccgggtcttcgttctaagggctccagtgtacacacattgcagaaacctgtatgccttttctactatttatctgcctcctattag-tgattttcagggaaacttcagaaggcaaaagggacattctcctttagcccATTCTCAGAC-AAAATCCCCCAACATTTAACTGATTCCTAATAGCTTAAAATCACTTTGAAAAATCCATATATTTATAAGCTTTTCTTCCCTCTATGATTTCTGGTCAGCTTGGGTTTTGTTTTTCATTCCATTTACTTCATCCTCGAAAAGATCTATTTTACTTCTATTTATTCTCATTTAGGGACATtgagaaaagaaaataactttcatgtgagaaatgcaagtccttttaagtaatcaggcccagagagatattcaaatgagac-agcagttctttcctgctcctctttgagctgtgtgttcatctaggctgcttgctgttgccacagtagctataaattaaccaataacggcacaccagacactataatccacaccccataatagtgtaacggtgtatagccagtcactaataaatgttatttccataagccaatgagaatttgtgacaaacctctttgcatcatcccacttctggacccttttttgcctttaagaaactgcttgttgcaaaactccaaagggagttcatatccaaggatacttgggtctgcttcttccaggcag-ctgtcctcattgtggctcaagtaaactctttgaattacgttttgtgcttcaGCCCCTTCCACTTAGATTAACAACATGGATTTGTGTCACCATGTACAGCAATTAAAATGTTTACGCTTTTCCCCTCGAGGGCACTGATGTGTTTTCCTGAGCACTTGGAATAGCTACGTAGGGTTTCCTGTCTAGATTATAgtttctgaaccttggtgctacttaccttt i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 5683053 947 + 72422247 taagcttctgtacccatcgtgtc-------tctgggtctccattctaagggctccagtgtacacacattgcagaaacctgtatgccttttctactatttatctgcctcctattag-tgattttcagggaaacttcagaaggcaaaagggacattctcctttagcccatacTCAGAC-AAAATCCCCCAACATTTAACTGATTCCTAATAGCTTAAAATCACTTTGAAAAATCCATATATTTATAACCTTTTCTTTCCTCTGTGATTCCTGGTCAGCTTGGGTTTTGTTTTTTATTCCATTTACTTCATCCTTGAAAAGATCTATTTTATGTCTATTTATTCTCATTTATTGACATtgagaaaagaaaataactttcatatgagaaatgcaagtccttttaaataatcaggcccagagagatattcaaatgagac-agcagttctgtcttgctcctctttgagctgtgtgttcatctaggctgcttgctgttccaacagtagctataaattaaccaataatgccacaccagacactataatccacacccaataatagtgtaacagtgtatagccagtcactaatcaatgttatttccataagccaatgagaatttgtgacaaacctgtttgcatcatcccacttcttgtcccttttttgcctttaagaaactgcttgttgcaaagctccaaatggagttcatatccaaggatacttgggtcggtttcttccaggcag-ctgtcctcattttggctcaagtaaactctttgaattacgttttgtgcttcaGCCTCTTCCACTTAGATTAACAACATGGATTTGTGTCACCATGTACAGCAATTAAAATGTTTATGCTTTTCCCCTCGAGGGCATTGATGTGTTTTCCTGAGCACTTGGAATAGCTACATAGTGTTTACTTTCTAGATTATggtttctaaaccttggtgctacttaccttt i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr17 44121095 943 - 99891981 taagcttcggcacccatcatgtg-------tctgggtcttcattctaagggctccagtgtacacacattgcagaaagctgtatacattttcta---tttatctgcctcctgttag-tgattttcagggaatcttcagaaggcaaaagggacattctcccttagcctatacCCAGAC-AAAATCCCCCAACATTTAACTGATTCCTGATAGGTTAACATCACTTTGAAAAATCTATATAATTATAACCTTTTCTTCCCTCTATGATTTCTGGTCAGCTTGGGTTTTGTTTTTTACTCCATTTACTTCATCCTCGAAAAGATCTATTTTATGTCTATTTATTCTCATTTATTGACACtgagaaaagaaagtaacttttatgtgagaaatgcaagtccttttaaacaatcaggcccagagagatattaaaatgagacaagcagttgtgccctactcctctttgagctgtgtgttcatccaggctgcttgctgttgccatagtagctataaattaaccaacaatgccacaccagacactataatcctcacccaataacagcttaacagtgtatagccagtcactaatcaatgttatttccataagccaatgagaatttgtgacaaacctctttgtatcatcccac--cttgtcccttttttgcctttaagaaactgcttgttgcaaagctccaaatggagttcatatccaaggatacttgggtctgtttcttccaggcag-ctgtcctcattttggctcaagtaaactctttgaattatgttttgtgcttcaGCCTCTTCCACTTGGATTAACAACAGGGATTTGCATCACCATGTACAGCAATTAAAATGTTTACACTTTTCCCCTTGAGGGCATTGATGTGTTTTCCTGAGCACTTGGAATAGCTACATGGTGTTTACTTCCTAGATTATggtttctcaaccttggtactatttaccttt i nomLeu3.chr17 C 0 C 0 s rheMac3.chr3 124542094 954 - 198365852 taagcttctgcacccaccgtgtggctgggtcctgggtcttcattctaagggctccagtgtacacacattacagcaatctgtaagccttttctactatttatctgcctcctgttag-tgattttcagggaatcttcagaaggcaaaagggacattctcccttagcccatacCCAGGC-AAAATCCCCCAACATTTAACTGATTCCTGGTAGCTTAACATCACTTTGAAAGATCTATATATTTACAACCTTTTCTTCCCTCTATGATTTCTGGTCAGCTTGGGTTTTGTTTTTTACTGCATTTACTTCATCCTCAAAAAGATCTATTTTATGTCTATTTATTCTCATTTATTGACATtgagaaaataaaataacttttatgtgagaaatactagtccttttaaataatcaggcccagagagatattaaaatgagac-agcagtcgtgcccaactcctctttgagctgtgtattcatctaggctgcttgctgttgccacagtagctataaattaatcaataatgccacaccagacaccataatccacacccaataacagcataacagtgtatagccagtcactaatcaatgttatttccataagccaatgagaatttgtgacaaacctctttgcatcatcccactccttgtcccttttcagcctttaagaaactgcttgttgcaaaactccaaatggagttcatatccaagaatacttgggtctgtttcttccaggcaa-ctgtccttattttggctcaggtaaactctttgaattacgttttgtgcttcaGCCTCTTCCACTTAGATTAACAACATGGATTTGTGTCACCATGTACCGCAATTAAAATGTTTACACTTTTCCCCTCAAGGGCATTGATGTGTTTTCCTGAGCACTTCGAGTAGCTACATTGTGTTTACTTTCTAGAATATggtttctcaaccttggtgctatttaccttt i rheMac3.chr3 C 0 C 0 s macFas5.chr3 124993515 954 - 192294377 taagcttctgcacccaccgtgtggctgggtcctgggtcttcattctaagggctccagtgtacacacattacagcaatctgtaagccttttctactatttatctgcctcctgttag-tgattttcagggaatcttcagaaggcaaaagggacattctcccttagcccatacCCAGGC-AAAATCCCCCAACATTTAACTGATTCCTGGTAGCTTAACATCACTTTGAAAGATCTATATATTTATAACTTTTTCTTCCCTCTATGATTTCTGGTCAGCTTGGGTTTTGTTTTTTACTGCATTTACTTCATCCTCAAAAAGATCTATTTTATGTCTATTTATTCTCATTTATTGACATtgagaaaataaaataacttctatgtgagaaatgctagtccttttaaataatcaggcccagagagatactaaaatgagac-agcagtcgtgcccaactcctctttgagctgtgtattcatctaggctgcttgctgttgccacagtagctataaattaatcaataatgccacaccagacaccataatccacacccaacaacagcataacagtgtatagccagtcactaatcaatgttatttccatgagccaatgagaatttgtgacaaacctctttgcatcatcccactccttgtcccttttcagcctttaagaaactgcttgttgcaaaactccaaatggagttcatatccaagaatacttgggtctgtttcttccaggcaa-ctgtccttattttggctcaggtaaactcttcgaattacgttttgtgcttcaGCCTCTTCCACTTAGATTAACAACATGGATTTGTGTCACCATGTACCGCAATTAAAATGTTTACACTTTTCCCCTCAAGGGCATTGATGTGTTTTCCTGAGCACTTCGAGTAGCTACATTGTGTTTACTTTCTAGAATATggtttctcaaccttggtgctatttaccttt i macFas5.chr3 C 0 C 0 s papAnu2.chr3 122257314 954 - 180432695 tAAGCTTCTGCACCCACCGTGTGGCTGGGTCCTGGGTCTTCATTCTAAGGGCTCCAGTGTACACACATTACAGCAATCTGTAAGCCTTTTCTACTATTTATCTGCCTCCTGTTAG-TGATTTTCAGGGAATCTTCAGAAGGCAAAAGGGACATTCTCCCTTAGCCCATACCCAGGC-AAAATCCCCCAACATTTAACTGATTCCTGGTAGCTTATAATCACTTTGAAAGATCTATATATTTATAACCTTTTCTTCCCTCTATGATTTCTGGTCagcttgggttttgttttttactgcaTTTACTTCATCCTCAAAAAGATCTGTTTTATGTCTATTTATTCTCATTTATTgacattgagaaaataaaataacttttatgtgAGAAATGCTAGTCCTTTTAAATAATCAGGCCCAGAGAGATATTAAAATGAGAC-AGCAGTCGTGCCCAACTCCTCTTTGAGCTGTGTATTCATCTAGGCTGCTTGCTGTTGCCACAGTAGCTATAAATTAATCAATAATGCCACACCAGACACCATAATCCACACCCAATAATAGCATAACAGTGTATAGCCAGtcactaatcaatgttatttccATAAGCCAATGAGAATTTGTGACAAACCTCTTTGCATCATCCCACTCCTTGTCCCTTTTTAGCCTTTAAGAAACTGCTTGTTGCAAAACTCCAAATGGAGTTCATATCCAAGAATACTTGGGTCTGTTTCTTCCAGGCAA-CTGTCCTTATTTTGGCTCAAGTAAACTCTTTGAATTACGTTTTGTGCTTCAGCCTCTTCCACTTAGATTAACAACATGGATTTGTGTCACCATGTACCGCAATTAAAATGTTTACACTTTTCCCCTCAAGGGCATTGATGTGTTTTCCTGAGCACTTCGAGTAGCTACATTGTGTTTACTTTCTAGAATatggtttctcaaccttggtgcTATTTACCTTT i papAnu2.chr3 N 0 I 559 s chlSab2.chr21 121513776 954 - 127223203 taagcttctgtacccaccgtgtgactgggtcctgggtcttcattctatgggctccagggtacacacattacagaagcctgtatgccttttctactatttatctgcctcctgttat-tgattttcagggaatcttcagaaggcaaaagggacattctcccttagcccatacCCAGGC-AAAATCCCCCAACATTTAACTGATTCCTGGTAGCTTAACATCACTTTGAAAGATCTATATATTTATAACCTTTTCTTCCCTCTATGATTTCTGGTCAGCTTGGGTTTTGTTTTTTACTGCATTTACTTCATCCTCAAAAAGATCTATTTTATGTCTATTTATTCTCATTTATTGACATtgagaaaataaaatatcttttatgtgagaaatgcaagtccttttaaataatcaggcccagagagatattaaaatgagac-agcagtcgtgcctgactcctctttgagctgtgtattcatctaggctgcttgaggttgccacagtagctataaattaatcaataatgccaagccagacaccataatccacacccaataatagcataacagtgtatagccagtcactaatcaatgttatttccataagccaatgagaatttgtgacaaacctctttgcatcatcccactccttgtccctttttagcctttaagaaattgcttgttgcaaaacgccaaatggagttcatatccaagaatacttgggtctgtttcttccaggcag-ctgtccttattttggctcaagtaaactctttgaattacgttttgtgcttcaGCCTCTTCCACTTAGATTAACAACATGGATTTGTGTTACCATGTACAGCAATTAAAATGTTTACACTTTTCCCCTCAAGGGCATTGATGTGTTTTCCTGAGCACTTCGAGTAGCTACATTGTGTTTACTTTCTAGAATATggtttctcaaccttggtgctatttaccttt i chlSab2.chr21 C 0 C 0 s calJac3.chr8 20056583 950 + 128169293 ttagcttctgtatccatcatgtg-------gttgggtcttcattctgagggcccccacatacacacattacagaaacctgtatgctttttctgctattcatctgcctcctttcagatgattttcagggaaacttcagaaggcaaaatgaacattctcccttaacccatacCCAGGCAAAAATCCCCGAACATTTAACTGATTCCTGATAGCTTAATATCATTTTGGAAAATCTATATATTTACAGCCTTTTCTTTCTTCTATGATTTCTGGTCAGCTTGGGTTTTGTTTATTACTCCATTTACCTCATCCTTGAAAAGATCTATTTTTTGTCCCTTTATTTTCATTTATTGACACtgagaaaagaaaataacctttatgtgagaaatgcaagtcctttcaaataatcaggcccagagtgatattaaaatgagac-agaagtcaggtcccactcctctttgagctgtgtattcatccaggctgcttgctgttgccacagtagctataaattaactaataatgccacaccagacactataatccacaccctataatagcttaacagtgtatagtcagtcactaatcaatgttatttccataagccaatgagaatttgtgacaaacatctttgcatcaccccactccttgtctcctttttgcctttaagaacctgctttcagtaaagctgcaaatggagttcatatccaaggatacttgggtctgtttcttacaagcagcctgtcctcattttggctcaagtaaactctttgaattatgttttgtgcttaagcctcttccacttagaccaacaACATGGATTTTTGGCACTATGCACAGCAATTAAAATGTTTACAATTTTTCCCTCAAGGGCATCGATGTGTTTTCCTGAGCACTTTGAATGCCTACAGGGTTTTTATTTTCTAGATTATggtttttcaaccttggagctatttaccttt i calJac3.chr8 C 0 C 0 e canFam3.chr18 4082200 1320 + 55844845 I a score=1148693.000000 s hg38.chr1_KI270765v1_alt 124732 419 + 185285 aggaccagaggattctttgttgtgggaggctgccctagcaatgataggtgtttcgtttgacctctaaatttcacacctccaccagtcttgacatccccacgataac-cctagacattgacaaatgtctcct-ggggaaaactctccaccagttgaCAGGTAAAGTTCTGGAAATATTGGATTTGTCAATTGAGATTTTATGTTATCCAAAACaaatatttttctttgttcttaaacatctacttccatctacttatctacttatttttacttttatttgtaacttaattccatcaaggagagagagtgcattttctgttatgctaaatttttgaagaatgtattgatattttatgacctgatatatggatgatatatagatattacatgtTTGTATTATCAAATTTCAGGGTGATAAT-----AAA s panTro4.chr1_GL389091_random 138362 419 + 179278 aggaccagaggactctttgttgtgggaggctgccctagcaatgctaggtgtttcgtttgacctctaaatttcacgtctccaccagtcttgacatgcgcacaataac-cctagacattgacaaatgtctcct-ggggaaaactctccaccagttgaCAGGCAAAGTTCTGGAAATATTGGAATTGTCAATTGAGATTTTATGTTATCCAAAACaaatatttttctttgtttttaaacatctacttccatctacttatctacttatttttacttttatttgcaacttaattccatcaaggagagagagtgcattttctgttatgctaaatttttgaagaatgtattgattttttatgacctgatatatggatgatatgtagatattacatgtTTGTATTATCAAATTTCAGGGTGATCat-----aaa i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 5684000 419 + 72422247 aggaccagaggattctttgttgtgggaggctgccctagcaatgctaggtgttttgtttgacctctaaatttcactactccaccagtcttgacatccccacaataac-cctagacattgacaaatgtcttct-ggggaaaactctccaccagtagacagccaACGTTCTTGAAATATTGGAATTGTCAATTGAATTTTTATGTTATCCAAAACaaatatttttctttgtttttaaacatctacttccatctacttatctacttattttcacttttatttgtaacttaattccatcaaggagagagagtgcattttctgttatactaaatttttgaagaatgtattgattttttatgacctgatatatgggtgatatgtagatattacatgtTTGTATTATCAAATTTCAGGGCGataat-----aaa i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr17 44122038 397 - 99891981 aggaccagaagattctttgttgtgggaggctgccctagcaatgctagaagtttcatttgacctctaaatttcacacccccaccagtcttgacatccccacaataac-cccagacattgccaaatgtctcct-ggggaaaaatctccaccagttgacagccaAAGTTCTTGAAATATTGGAATTGTCAGTTGAGTTTTTATGTTATTCACAACAAATATTTTTCTTTGTTTTTAAACATCTACTTCCATCTACTTATCTACTTATT----------------------TTCCATCAAGGATAGAGAGTGCATTTTCTGTTATGCTGAATTTTTCAAGAATGTATTGATTTTTTATAATCTGTTGTATGGATGATATGTAGATATTACCTGTTTGTATTACCAAATTTCAGGGCAATAAT-----AAA i nomLeu3.chr17 C 0 C 0 s rheMac3.chr3 124543048 414 - 198365852 agaaccagaggattatttgttgtgggaggctgccctagcaatgctagatgtttcatttgacctccaaatttcacacgcccaccagtcttgacattcccacagtaac-tctagacattgccaaatgtctcct-ggggaaaaatttccaccagttgagCGCCCAAGTTCTTGAAATATTGGAATTGTCAATTGAGTTTTTATGTTATCAAAAACAAATATTTTTCTTTGTTTTAAAACTTCTACTTCCATCTACTTATCTACTTATTTTTACTTTTATTTGTAACTTAATTCCATCAAGGAT----AGTGCATTTTCTATTATGCTAATTTTTTCAAGAATGTTTTGAT-TTTTATGACCTAATATATGGATGATATGTAGGTATTACATGTTTGTATTATCAAATTTCAGGGCAATAAT-----AAA i rheMac3.chr3 C 0 C 0 s macFas5.chr3 124994469 414 - 192294377 agaaccagaggattatttgttgtgggaggctgccctagcaatgctagatgtttcatttgacctccaaatttcacacgcccaccagtcttgacattcccacagtaac-tctagacattgccaaatgtctcct-ggggaaaaatttccaccagttgagagccCAAGTTCTTGAAATATTGGAATTGTCAATTGAGTTTTTATGTTATCAAAAACAAATATTTTTCTTTGTTTTAAAACTTCTACTTCCATCTACTTATCTACTTATTTTTACTTTTATTTGTAACTTAATTCCATCAAGGAT----AGTGCATTTTCTATTATGCTAATTTTTTCAAGAATGTTTTGAT-TTTTATGACCTAATATATGGATGATATGTAGGTATTACATGTTTGTATTATCAAATTTCAGGGCAATAAT-----AAA i macFas5.chr3 C 0 C 0 s papAnu2.chr3 122258827 414 - 180432695 agaaccagaggaTTATTTGTTGTGGGAGGCTGCCCTAGCAATGCTAGATGTTTCATTTGACCTCCAAATTTCACACGCCCACCAGTCTTGACATTCCCACAGTaac-tctagacattgccaaatgtctcct-agGGAAAAATTTCCACCAGTTGAGAGCCCAAGTTCTTGAAATATTGGAATTGTCAATTGAGTTTTTATGAtatcaaaaacaaatatttttctttgttttaaaacttctacttccatctacttatctacttatttttacttttatttgtaacTTGATTCCATCAAGGAT----AGTGCATTTTCTATTATGCTAAATTTTTCAAGAATGTTTCGAT-TTTTATGACCTAATATATGGATGATACGTAGATATTACATGTTTGTATTATCAAATTTCAgggcaataat-----aaa i papAnu2.chr3 I 559 C 0 s chlSab2.chr21 121514730 415 - 127223203 aggaccacaggattatttgttgtgggaggctgccctagcaatgctagatgtttcatttgacctccaaatttcacatgctcaccagtcttgacatccccacaataacttctagacattgccaaatgtctcct-ggggaaaaatttccaccagttgagagccCAAGTTCTTGAAATATTGGAATTGTCAATTAAGTTTTTATGTTATCAAAAACAAATATTTTTCTTTGTTTTAAAACTCCTACTTCCATCTACTTATCTACTTATTTTTACTTCTATTTGTAACTTGATTCCATCAAGGAT----AGTGCATTTTCTATTATGCTAAATTTTTCAAGAATGTTTTGAT-TTTTATGACCTAATATATGGATGATACGTAGACATTACATATTTGTATTATCAAATTTCAGGGCAATAAT-----AAA i chlSab2.chr21 C 0 C 0 s calJac3.chr8 20057533 423 + 128169293 aggaccagaggattcttcgtggtgggaagttgccctgacaatgttagaagtttcgtttgacccctaaatttcacacccccaccattctcgacatccccaccataac-tctagacattgccaaatgtcacctgggggaagaatctccaccagttgagagccaAAGTGCTTGAAATATTGGAATTATCAATTGAGTATTTATGTTATCCAAAACAAATATTTTTCTTTATTTT-AAACATCTACTTCAATCTACTTCTGTACTTATTTTTACTTTTATTTGTAACTTCATTGCATCAAGGATAGAAAGTGCATTTTCTGTCATGCTAAATTTTTCAAGAATGTATTGTT-TTTTATGAGCTAATATATGGGTAATATGTATATATTACATGTGTGTATTGTCAAATTTCAGGGCAATAATAAAACAAA i calJac3.chr8 C 0 C 0 e canFam3.chr18 4082200 1320 + 55844845 I a score=411329.000000 s hg38.chr1_KI270765v1_alt 125151 131 + 185285 ATAAATACTTATAATATTTATATTGTCACTGTATATTAGTTATTTTCTTTCTTC--ACTACAGGAGTTTTTCAACCTATAGGC--TATGTTTCAATTCTAGGTTATCCAGTAGATTTTGAAATGTTATGATTAAA s panTro4.chr1_GL389091_random 138781 131 + 179278 ataaatacttataatatttatattGTCACTGTATATTAGTTATTTTCTTTCTTC--ACTACAGGAGTTTTTCAACCTATAGGC--TATTTATCAATTCTAGGTTATCCAGTACATTTTTAAATTTTATGATTTAA i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 5684419 131 + 72422247 ataaatacttataatatttatattGTCACTCTATATTAGTTATCTTCTTTCTTC--ACTACAGGAGTTTTTCAACCTATAGGC--TATTTTTCAATTCTAGGTTATCCAGTAGATTTTGACATGTTATGATTAAA i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr17 44122435 128 - 99891981 ATAAATACTT---CTATTTATATTGTCACTATATATTAGTTATTTTCTTTTTTC--ACTACAGGAGTTTTTCAACCTATAGGC--TATTTTTCAATTCTAGGTTATCCAGCAGATTTTGAAACGTTATGATTAAA i nomLeu3.chr17 C 0 C 0 s rheMac3.chr3 124543462 131 - 198365852 ATAAATACTTCTACTATTTATATTGTCACTGTATATTAGTTATTTTCTTTTTTC--ACTACAGGAGTTTTTCAACCTAGAGGC--AATTTTTCAATTCTAGGTTATCCAGTAGATTTTGAAATGTTATGATTAAA i rheMac3.chr3 C 0 M 324 s macFas5.chr3 124994883 131 - 192294377 ATAAATACTTCTACTATTTATATTGTCACTGTATATTAGTTATTTTCTTTTTTC--ACTACAGGAGTTTTTCAACCTAGAGGC--AATTTTTCAATTCTAGGTTATCCAGTAGATTTTGAAATGTTATGATTAAA i macFas5.chr3 C 0 C 0 s papAnu2.chr3 122259241 131 - 180432695 ataaatacttctacTATTTATATTGTCACTGTAtattagttattttcttttttc--actacaGGAGTTTTTCAACCTAGAGGC--AATTTTTCAATTCTAGGTTATCCAGTAGATTTTGAAATGTTATGATTAAA i papAnu2.chr3 C 0 C 0 s chlSab2.chr21 121515145 131 - 127223203 ATAAATACTTCTACTATTTATATTGTCACTGTATATTAGTTATTTTCTTTTTTC--ACTACAGGAGTTTTTCAACCTAGAGGC--AATTTTTCAATTCTAGGTTATCCAGTAGATTTTGAAATGTTATGATTAAA i chlSab2.chr21 C 0 C 0 s calJac3.chr8 20057956 119 + 128169293 ATAAATACTTCTAATATTTATATTGTCACTACATATTAGTTATTTTCTTTTTTT--GCTACAGGAAATTTTCGGCCTATAGGC--TATTTTTCAATACTAGG------------TTTTGAAATGTTATGATTAAA i calJac3.chr8 C 0 C 0 s canFam3.chr18 4083520 131 + 55844845 ATAAATA-TTCTAATATTTACACG---ATTATATATTTAACATTTTCTTTTTTCTTACTATAGCGATTTTCTAACCCACAGCCTTTTTTTTTCAATTATAGGTTAACATGTAGGTTATTAAATATTATGAGTAAT i canFam3.chr18 I 1320 C 0 a score=8852.000000 s hg38.chr1_KI270765v1_alt 125282 3 + 185285 TAT s panTro4.chr1_GL389091_random 138912 3 + 179278 TAT i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 5684550 3 + 72422247 TAT i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr17 44122563 3 - 99891981 TAT i nomLeu3.chr17 C 0 C 0 s macFas5.chr3 124995014 3 - 192294377 TAT i macFas5.chr3 C 0 C 0 s papAnu2.chr3 122259372 3 - 180432695 TAT i papAnu2.chr3 C 0 C 0 s chlSab2.chr21 121515276 3 - 127223203 TAT i chlSab2.chr21 C 0 C 0 s calJac3.chr8 20058075 3 + 128169293 TAT i calJac3.chr8 C 0 C 0 s canFam3.chr18 4083651 3 + 55844845 CAT i canFam3.chr18 C 0 I 193 e rheMac3.chr3 124543593 324 - 198365852 M a score=676388.000000 s hg38.chr1_KI270765v1_alt 125285 314 + 185285 CTACTTCTCAAGCATTCATCTTTGCAAATGAAACAATCCTAAGCTCTTATAATACACATCATATAAAGGGCAGATTAGTCAATGTATGGTTCAGAAATAATTAAGTAATA-TTTATAAGAAAATTAAAAATTTATATCCTTAACTCAG---ATAACAATAATCCAAATTAAAATTTGATTTCATTACATAATTTAAAATGACATCAGAATGCTAGTAAAAATTATA-CAAAAAATTTATGTAATCTTATTAAGCTGTGGGACTTTATTAGCATAAATTCAAATACAGGAACCAAAGTAAGATTGAGACCTATAGTCAAA s panTro4.chr1_GL389091_random 138915 315 + 179278 CTACTTCTCAAGCATTCATCTTTGCAAATGAAACAATCCCAAGCTCTTATAATACACATCATATAAAGGGCAGATTAGTCAATATATGGTTCAGaaataattatgtaata-tttataagaaaattaaaaatttaGATCCTTAACTCAG---ATAACAATAATCCAAATTAAAATTTGATTTCATTACATAATTTAAAATGACACCAGAATACTAGTAAAAATTATATTAAAAAGTTTATGTAATCTTATTAAGCTGTAGGACTTTATTAGCATAAATTCAAATACAGGAACCAAAGTAAGATTCAGACCTATAGTCAAA i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 5684553 312 + 72422247 CTACTTCTCAAGCATTCATGTTTGCAAATGAAACAATCCCAAGCTCTTATAATGCACATCATATAAAGGGCAGATTAGTCAATATATGGTTCAGaaataattatgtaata-tttataagaaaattaaaaatttaGATCCTTAACTCAG---ATAACAATAATCCaaattaaaatttgatttaattacataatttaaaatGACACCAGAATACTAGTAAAAA-TGTA--GATAAGTTTATATAATCCTTTTTAGCTGTAGGACTTTATTAGCATAAATTCAAATACAGGAACCAAAGTAAGATTGAGACCTATAGTCAAA i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr17 44122566 315 - 99891981 CTACTTCTCAAGCATTCGTCTTTGCAGATGAATCATTCCCAAGCTCTTATAATGCACAGCATAAAAAGGGCAGATTAGTCAATATATGGTTCAGAAATAATGATGTAATA-TTTATAAGAAAATTAAAAATTTAGATCCTTAACTCAGATAATAACAATAATCCAAATTAAATTTTGATTTAATTACATAATTTAAAATGACACCAGAATACTAGTAAAAA-TGTA--GAAAAGTTTATATAATCCTTTTTAGCTGTAGGACTTTATTAGCATAAATTCAAACACAGGAACCAAAGTAAGATTAAGACCTATAGTAAAA i nomLeu3.chr17 C 0 C 0 s macFas5.chr3 124995017 312 - 192294377 CTACTTCTCAAGTATTCATCTTAGCAAATGAATCAATCTTAATCTCTTATAGTGCACATCATATAAAGGGCAGATTAGTCAATATATGGTTCAGAAATAATGATGTAATA-TTTATAAGAAAATTAAAAATTTAAATCCTTAACTCAG---ATAACAATAATCCAAATTAAAATTTGATTTAATTACATAATTTAAAATGACACCAGACTACTAGTAAAAA-TGTA--AGTAAGTTTATATAATCCTTTTTAGCCGTAGGACTGTATTAGCATAAATTCAAATACAGGAGCAAAAGTAAGATTGAGAGCTGTAGTAAAT i macFas5.chr3 C 0 C 0 s papAnu2.chr3 122259375 312 - 180432695 CTACTTCTCAAGCATTCATCTTAGCAAATGAATCAATCTTAATCTCTTATAGTGCACATCATATAAAGGGCAGATTAGTCAATATATGGTTCAGAAATAATGATgtaata-tttataagaaaattaaaaatttaaatccttaactcag---ataacaataatccaaattaaaatttgatttaattacataatttaaaatgacaCCAGACTACTAGTAAAAA-TGTA--AGTAAGTTTATATAATCCTTTTTAGCCGTAGGACTGTATTAGCATAAATTCAAATACAGGAGCAAAAGTAAGATTGAGAGCTGTAGTAAAT i papAnu2.chr3 C 0 C 0 s chlSab2.chr21 121515279 315 - 127223203 CTACTTCTCAAGCATTCATCTTAGCAAATGAATCAATCTTAATCTCTTATAGTGCACATCATATAAAGGGCAGATTAGTCAATATATTGTTCAGAAATAATGATGTAATA-TTTATAAGAAAATTAAAAATTTAAATCCTTAACTCAGATAATAACAATAATCCAAATTAAAATTTGATTTAATTACATAATTTAAAATGACACCAGAATACTAGTAAAAA-TGTA--GGTAAGTTTATATAATCCTTTTTAGCCATAGGACTGTATTAGCATAAATTCAAATACACGAGCAAAAGTAAGATTGAGAGCTGTAGTAAAC i chlSab2.chr21 C 0 C 0 s calJac3.chr8 20058078 316 + 128169293 CTACTTCTCAAGTGTTCATCTTTGCAAATGAATCAATTTCAAGTTCTTATAATGCACTTCGTATAAAGGGCAGGTTAGTCAATATATGGTGCAGAAATAATCATGTAATACTTTATAAGAAAATTAAAAATTTAGAGACTTAACTCAGATAATAACAATAACCCAAATTAAAATTGGATTTAATTATGTAATTAAAAATGACATCAGAAAACTACTAAAAA-TGTA--GATAAGTTTACATAATCCTTTTTAGCTGTAGGACTTTCTTAGCATAATTTCAAATACAAGAACCAAAATAAGATTGAGAGATATAGTAAAA i calJac3.chr8 C 0 C 0 e rheMac3.chr3 124543593 324 - 198365852 M e canFam3.chr18 4083654 193 + 55844845 I a score=97287.000000 s hg38.chr1_KI270765v1_alt 125599 39 + 185285 GGTTAAAATGTACACATTATAGGGGCATGATTAA--ACTAA s panTro4.chr1_GL389091_random 139230 39 + 179278 GGTTAAAATGTACACATTATAGGGGCATGATTAA--ACTAA i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 5684865 39 + 72422247 GGTTAAAATGTACACATTATAGGGGCAGGATTAA--ACTAA i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr17 44122881 39 - 99891981 GGTTAAAATGTACATGTTACAGTGGCGTGATTAA--ACTAA i nomLeu3.chr17 C 0 C 0 s rheMac3.chr3 124543921 39 - 198365852 GGTTAAAATGTACACATTATATTGGTATAATTAA--ACTAA i rheMac3.chr3 M 324 I 6 s macFas5.chr3 124995329 39 - 192294377 GGTTAAAATGTACACATTATATTGGTATAATTAA--ACTAA i macFas5.chr3 C 0 C 0 s papAnu2.chr3 122259687 39 - 180432695 GGTTAAAATGTACACATTATATTGGCATAATTAA--ACTAA i papAnu2.chr3 C 0 C 0 s chlSab2.chr21 121515594 39 - 127223203 GGTTAAAATGTACGCATTATAGTGGCATAATTAA--ACTAA i chlSab2.chr21 C 0 C 0 s calJac3.chr8 20058394 33 + 128169293 GCCTAAAATGTACACattata--------attaaatactaa i calJac3.chr8 C 0 C 0 e canFam3.chr18 4083654 193 + 55844845 I a score=6354.000000 s hg38.chr1_KI270765v1_alt 125638 15 + 185285 TTTAAAGCATAATAA---------------- s panTro4.chr1_GL389091_random 139269 15 + 179278 TTTAAAGCATAATAG---------------- i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 5684904 15 + 72422247 TTTAAAGCATAATAA---------------- i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr17 44122920 15 - 99891981 TTTAAAGCATAATAA---------------- i nomLeu3.chr17 C 0 C 0 s macFas5.chr3 124995368 6 - 192294377 -----AGCATC-------------------- i macFas5.chr3 C 0 C 0 s papAnu2.chr3 122259726 11 - 180432695 TTTAAAGCATC-------------------- i papAnu2.chr3 C 0 C 0 s chlSab2.chr21 121515633 11 - 127223203 TTTAAAGCATC-------------------- i chlSab2.chr21 C 0 C 0 s calJac3.chr8 20058427 31 + 128169293 ttagaaacaaattaattataatctataatca i calJac3.chr8 C 0 C 0 e rheMac3.chr3 124543960 6 - 198365852 I e canFam3.chr18 4083654 193 + 55844845 I a score=68181.000000 s hg38.chr1_KI270765v1_alt 125653 30 + 185285 ----------------------------------------------CATG----GAGAAATATTGCAAAACATACATTTT s panTro4.chr1_GL389091_random 139284 30 + 179278 ----------------------------------------------CATG----GAGAAATATTGCAAAACTTACATTTT i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 5684919 30 + 72422247 ----------------------------------------------CATG----GAGAAATATTGAAAAACATACATTTT i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr17 44122935 30 - 99891981 ----------------------------------------------CATG----GGGAAATATTGCAAAATATATATTTT i nomLeu3.chr17 C 0 C 0 s rheMac3.chr3 124543966 30 - 198365852 ----------------------------------------------CATG----GAGAAATATTACAAAATATACATTTT i rheMac3.chr3 I 6 I 74 s macFas5.chr3 124995374 30 - 192294377 ----------------------------------------------CATG----GAGAAATATTACAAAATATACATTTT i macFas5.chr3 C 0 I 1 s papAnu2.chr3 122259737 30 - 180432695 ----------------------------------------------CATG----gagaaatattacaaaatatacatttt i papAnu2.chr3 C 0 I 1 s chlSab2.chr21 121515644 30 - 127223203 ----------------------------------------------CATC----GAGAAATACTGCAAAATATACATTTT i chlSab2.chr21 C 0 I 1 s calJac3.chr8 20058458 80 + 128169293 tatattatatattataatttatattaaatatattaCACATTATAAGCATATAATAATAAATACTGCAAAATATACATTTT i calJac3.chr8 C 0 C 0 e canFam3.chr18 4083654 193 + 55844845 I a score=79285.000000 s hg38.chr1_KI270765v1_alt 125683 66 + 185285 ACTGAATTAATTGTTAG------TATCTAATCATTTTGTGAGAACC---------------AAATTAAAAAGTAGCTacac----acgcac s panTro4.chr1_GL389091_random 139314 66 + 179278 ACTGAATTAATTGTTAG------TATCTAATGATTTTGTGAGAACC---------------AAATTAAAAAGTAGCCACAC----ACGCAC i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 5684949 70 + 72422247 ACTGAATTAATTGTTAA------TATCTAATCATTAAGTGAGAACA---------------AAGGTAAAGAGTAGCTACACACAAACACAC i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr17 44122965 64 - 99891981 ATTGTATTAATTGTTAATATTCTTATTTAATCAT----TGAGAACA---------------AAGGTAACGAGTAGCTacac--------ac i nomLeu3.chr17 C 0 C 0 s macFas5.chr3 124995405 79 - 192294377 ACTGTATTAATGGTTAATATTCTTATTTAATCATTAAGTGAGAACATCAATTCTTT----GCAGATAAAGAGTAGCTACAC----AC---- i macFas5.chr3 I 1 C 0 s papAnu2.chr3 122259768 79 - 180432695 actgtattaatggttaatattcttatttaatcATTAAGTGAGAACATCAATTCTTT----GCAGATAAAGAgtagctacac----ac---- i papAnu2.chr3 I 1 C 0 s chlSab2.chr21 121515675 79 - 127223203 ACTGTATTAATGGTTAATATTCTTATTTAATCATTAAGTGAGAACATCAATTCTTT----GCAGGTAAGGAGTAGCTACAC----AC---- i chlSab2.chr21 I 1 C 0 s calJac3.chr8 20058538 77 + 128169293 ---ATGATATTGGTTAATAT---TATTTAATCATTCAGTAAGAACATCAAGTCTTTACACGTAGGTAATGAGTAGCTATAC----AC---- i calJac3.chr8 C 0 C 0 e rheMac3.chr3 124543996 74 - 198365852 I e canFam3.chr18 4083654 193 + 55844845 I a score=2384029.000000 s hg38.chr1_KI270765v1_alt 125749 903 + 185285 acacccacacacaAGTGCAATACTGTCAAATAAA----CGATGTTCAGCTACACTAGAAATCACACCTGTGTTTT-CTCCACAGAAAA-----GATTAAAAATCGCAATAATTTTTATTGTACATATGGAGGtaaagatactcaaa--atattaccctaaaatacatta--tttttt-----tgagatggagttttgtttttattgcccaggctagagtgcaatggcacaatcttggctcactgcaacttcagcct-cccagggtcaggtaattctcctagctcggcctcccaagtagctgagattacaggcatgcaccaccacactcggctaa-ttttttgtatttagtagagacggcgtttcaccatgttggtcaggctggtctccaactcctgacttcaggtgatctaccca------cttcagcctcccaaagtgctgggattacaggcatgcgcc--------tggccagctttttgacatatttcacgatggctactcggaagactggagatagcttcttctacaagaatagctgaaaagctgtgtttgttggggagatttgcatttgtagagaaaatctgcattgatatagacaggctttccctgagatactcccttgtctgggtataggaatgattaac-tgagcctggcacgtttacatttctaaaagccatttcctatctatacttcccaagaggagggctgctccctgtgaggtttcatccatgtaacaagaccacctctgctgccaggctcctctttcttccttgtcgtcacctgtcttccacaaagcctgatttaccaacctacagctctgtgttttctgcaacctcaagacagcataGGCGTGTTGACTACCTTGCCTTTCCTGGAGTTTTtatataaagagtatatatttgt--atatctctttataatatacaaatatttgta----------ta s panTro4.chr1_GL389091_random 139380 902 + 179278 ACACCCACACACAAGTGCAATATTGTCAAATAAA----CGATGTTCAGCTACACTAGAAATCACACCTGTGTTTT-CTCCACAGAAAA-----GATTAAAATTCGCAATAATTTTTATTGTACACATGGAGGtaaagatactcaaa--atattaccctaaaatacatta---ttttt-----tgagatggagttttgtttttattgcccaggctagagtgcaatggcacaatcttggctcactgcaacctcagcct-cccagggtcaagtaactctcctagctcggcctcccaagtagctgagattacaggcgtgcaccaccacactcggctaa-ttttttgtatttagtagacacggggtttcaccatgttggtcaggctggtctccaactcctgacttcaggtgatctaccca------cttcagcctcccaaagtgctgggattacaggcatgcgcc--------tggccagctttttgacatatttcacgatggctactcggaagactggagatagcttcttctacaagaatagctgaaaagctgtgtttgttggggagatttgcatttgtagagaaaatctgcattgatatacagaggctttccctgagatactcccttgtctgggtataggaatgattaac-tgagcctgacatgtttacatttctaaaaaccatttcctatctatacttcccaagaagagggctgctccctgtgaggtttcatccatgtaacaagaccacctctgctgccaggctcctctttcttcattgtcgtcatctgtcttccacaaagcctgatttaccaacctacagctctgtgttttctgaaacctcaagacagcataGGCGTGTTGAGTACCCTCCCTTTCCTGGAGTTTTtatataaagagtatatatttgt--atatctctttataatatacaaatatttgta----------ta i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 5685019 912 + 72422247 ACACCCACACAAAAGTGCAATATTGTCAAATAAA--TGTGATGTTCAGCTACACTAGAAATCACACCTGTGTTTT-CTCCACAGAAGAGTAATGATTAAAAATCACAATAATATTTATTGTACATATGGAGAtaaagatactcaaa--ctattaccctaaaatactttttttttttt-----tgagatggagttttgcttttgttgcccaggctggagtgcaatggcacaatcttggct-actgcaacctcagact-cccagggtcaagtaatcctcctagctcagcctcccaagtagctgagattacaggcatgtgccaccacacttggctaatttttttgtatttagtagagatggggtttcaccaagttggtcaggctggtcttgaactcctgacttcaggtgatctaccca------cttcagcctcccaaagtgctgggattacaggcgtgcacc--------tggccaactttttgacatatttcaagatggctactcggaagactggaaatagcttcttctagaagaatagctgaaaagctgtgtttgttggggagatttgcatttgtagagcaaatctgcattgatatagacaggctttccctgagatactcccttgtctgggtttaggaaagattaac-tgagtctggcacgtttacatttttaaaaaccatttcctatctatacttcccaagaggagggctgctccctgtgaggtttcatccatgtaacaagaccacctctgctgtcaggctcctctttcttccttgtcatctcctgtcttccgcaaagcctgatttgccaacgtacagctctgtgttttctgtgacctcaagacagcataGGCGTGTTGACTACCTTGCCTTTCCTGGAGTTTTtatatatatagtatgtattcct--atatctatttataatgtacaaatatttgta----------ta i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr17 44123029 917 - 99891981 acacacacacacaAGTGCAATATTGACAGATAAA--CGTGATGTTCAGCTACACTAGAAATCACACCTGTTTTTT-CTCCAAAGAAGAGTAAAGATTAAAAATCACAATAATATTTATTGTACATATGGAGGtaaagatactcaaa--atattaccctaaaatacattttttttttt-----tgagatggagttttgcttttattgcccaggctggagtgcaatggcacaatcttggctcactgcaacctcagcct-cccagggtcaagtaattctcctgcctcagcctcccaagtagctgagattacaggcatgcaccaccacactcagctaa-ttttttgtatttagtagagacggggtttcaccatgttggtcaggctggtctcgaactcctgacctcaggtgatctaccca------cttcagcctcccaaagtgctgggattacaggcgtgcaca--------tggccaactttttggcatatttcaagatggctactcggaagactggaaatag---cttctacaagaatagctgaaaagccgtgtttgttggagagatttggatttgtagagaaaatctgcattgatatagacaggctttccctgagatactcccttgtctgggtttaggaaagattaac-tgagtctggcatgtttaaagttctaaaaaccatttcctatctattcttcccaagaggagggctgctccctgggaggtttcatccacgtaacaagaccacctctgctgccaggctcctc--tcttcctcctcgtcacttgtcttccacaaagcctgatttatcaacatacagctctgtgttttctgtaacctcaagacagcataGACGTGTTAACTACCTGGCCTTTCCTGAAGTTtatatacatatagtatatatttgt--atatatatttataatatacaaatatttgtatatatttgtgta i nomLeu3.chr17 C 0 C 0 s rheMac3.chr3 124544070 921 - 198365852 ACACACACACACAAGTGCAATATTGTCAAATAAATACATGATGTTCAGCTACACTAGAAATCACACCTGTTTTTTTCTCTACACAAGAGTAAAGATTAAAAATCACAATAATAGTTATTGTACATAtggaggtaaacaaactcaaa----tttaccctaaaatacattttttttttt---aatgagacggagttttgcttttgttgcccaggctggagtacaattgcacagtctcagctcattgcaacctctgcctccccagagtcaagcaactctcctgcctcagcctcccaagtagctaagattacaggcatgtgctgccatacttatctaa-ttttttgtatttagtagagacggggtttcatcatgttggtcaggctgatctcaagctcctgacctcaggtgatccaccca------cctcagcctcccaaggtgctgggattacaggggtgcaccactgcacggggccaactttttgacatatttcaagatggctactcggaagacaggaaatagcttcttctacaagaatagctgaaaacctagctttgttggggagatttgcattggaagagaaaatgtgcattgatatagacaggctttccctgagatactcccttgtctgggtctaggaaagattaacttgagtctggcacgtttaaagttctaaaaatcatttgctatctattcttcccaaggggagggctgctccctgtgaggcttcatccacaaagcaagatcacctctgcttgcaggttccttttccttcctcataatcagctgtcttccgcaaagtctgatttaccaacatacagctc--tgttttctgtaacctcaaaacagcataGACGTATTAACTACCTTGCCTTTCCTGGAGTT--TAGatatatagtatatacttgt--atatatgtttataatatacaaatatttgta----------ta i rheMac3.chr3 I 74 I 339 s macFas5.chr3 124995484 914 - 192294377 ------ACACACAAGTGCAATATTGTCAAATAAATACATGATGTTCAGCTACACTAGAAATCACACCTGTTTTTTTCTCTACACAAGAGTAAAGATTAAAAATCACAATAATAGTTATTGTACATAtggaggtaaacaaactcaaa----tttaccctaaaatacattttttttttt----atgagacggagttttgcttttgttgcccaggctggagtgcaattgcacagtctcagctcattgcaacctctgcctccccagagtcaagcaactctcctgcctcagcctcccaagtagctaagattacaggcatgtgctgccatacttatctaa-ttttttgtatttagtagagacggggtttcatcatgttggtcaggctgatctcaagctcctgacctcaggtgatccaccca------cctcagcctcccaaggtgctgggattacaggggtgcaccactgcacggggccaactttttgacatatttcaagatggctactcggaagacaggaaatagcttcttctacaagaatagctgaaaacctagctttgttggggagatttgcattggaagagaaaatctgcattgatatagacaggctttccctgagatactcccttgtctgggtctaggaaagattaacttgagtctggcacgtttaaagttctaaaaatcatttgctatctattcttcccaaggggagggctgctccctgtgaggtttcatccacaaagcaagatcacctctgcttgcaggttccttttccttcctcataatcagctgtcttccgcaaagtctgatttaccaacatacagctc--tgttttCTGTAACCTCAAAACAGGCTAGACGTATTAACTACCTTGCCTTTCCTGGAGTT--tagatatatagtatatacttgt--atatatgtttataatatacaaatatttgta----------ta i macFas5.chr3 C 0 I 10 s papAnu2.chr3 122259847 920 - 180432695 ------acacacaagtgcaatATTGTCAAATAAATACATGATGTTCAGCTACACTAGAAATCACACCTGtttttttCTCTACAGAAGAGTAAAgattaaaaatcacaataatagTTATTGTACATATGGAGGTAAACAAACTCAAA----TTTaccctaaaatacatttttttttttttttatgagatggcgttttgcttttgtttcccaggctggagtgcaatagcacagtctcagctcattgcaacctctgcctccccagagtcaagcaactctcctgcctcagcctcccaagtagctaagattacaggcatgtgccgccatacttatctaa-ttttttgtatttagtagagatggggtttcatcatgttggtcaggctgatctcaagctcctgacctcaggtgatccaccca------cctcagcctcccaaggtgctgggattacaggggtgcaccactgCACGGGGCCAACTTTTTGACATATTTCAAGATGGctactcagaagacaggaaatagcTTCTTCTACAAGAATAGCTGAAAACCTAGCTTTGTTGGGGAGATTTGCATTGGAAGAGAAAATCTGCATTGATATAGACAGGCTTTCCCTGAGATACTCCCTTGTCTGGGTCTAGGAAAGATTAACTTGAGTCTGGCACGTTTAAAGTTCTAAAAATCATTTCCTATCTATTCTTCCCAAGGGGAGGGCTGCTCCCTGTGAGGTTTCATCCACAAAGCAAGATCACCTCTGCTTGCAGgttccttttccttcctcataATCACCTGTCTTCCACAAAGTCTGATTTACCAACATACAGCTCTGTGTTTTCTGTAACCTCAAAACAGCATAGACGTATTAACTACCTTGCCTTTCCTGGAGTt--tagatatatagtatatacttgt--atatatgtttataatatacaaatatttgta----------ta i papAnu2.chr3 C 0 I 10 s chlSab2.chr21 121515754 915 - 127223203 ------ACACACAAGTGCAGTATTGTCAAGTAAATACATGATATTCAGCTACACTAGAAGTCACACCTGTTTTTTCCTCCACAGAAGAGTAAAGATTAAAAATCATAATAGTAGTTATTGTATATATGGAGGtaaacaaactcaaa--atattaccctaaaatacattgttattt------atgagacggagttttgcttttgttgcccaggctggagtgcaatagcacagtctcagctcactgcaacctctgcct-cccagagtcaagcaattttcctgcctcagcctcccaagtagctgagattacaggcatgtgccgccatacttgtctaa-ttttttgtatttagtagagacggggtttcatcatgttggtcaggctgatctcaaactcctgacctcaggtgatccaccca------cctcagccttccaaagtgctgggattacaggggtgcaccactgcacggggccaactttttgacatatttcaagatggctactcggaagacaggaaatagcttcttctacaagaacagctgaaaacctagctttgttggggagatttgcatttgtagagaaaatctacattgatatagacaggctttccctgagatactcccttgtctgggtctaggaaagattaacttgagtctggcacgtttaaaggtctaaaaaccatctcctacctattcttcccaaggggagggctgctccctgtgaagtttcatccacataacaagaccacctctgcttgcaggttccttttccttcctcctaatcacctgtcttccgcaaagtctgatttaccaacatacagctctgtgttttctgtaacctcaaaacagcataGACGTATTAACTACCTTGCCTTTCCTGGAGTT--tagatatatagtatatacttgt--atatatgtttataatatacaaatatttgta----------ta i chlSab2.chr21 C 0 I 10 s calJac3.chr8 20058615 890 + 128169293 ------ACATACAAGTGCAATGTGGTCAAACAA---TGTGATGTT------CACTAGAAATCACACCTGTTTTTT-CTCTACAGAAGAGTAAAAATTAAAAGTTACAATAGTAGTTAATGTACGTATGGAGGtaaagaaacccaaaatattttaccctaaaatactttt---ttttt-----tgagacagagttttgctctagttgtccaggctggagtgcattggcacaatttcagctcactgcaacctccacct-cccag-ttcaagggattctcctgcctcagactctcaagtagctgagattacaggcatttaccattatgcctagctca-ttctttgtatttagtagaggcagggttttactatgttggtagtgcagatctccaacccctgacctcaggagatccacccatctcggcctctgcctcccaaagtgctgggattacag------accgctgcactcggcacaccatttgacatatttcaagatggctactcacaagacc-gaaacagcttcttctacaagtgtagctgaaaagctgtctttgttggggagatttgcatttgtagagaaaatctgcattgttatagacaggctttccctgagatactcctttgtctgtgtctagggaagattaac-tgagtttggcacctataaaggtctaaaaaccatttcccatctattcttcccaaggggtgggctgctctctgtgaggcttcatacacataacaagaccacctctgctgccagcctcctcttccttcctcactgtcacctgcctc------------atttgccaacataCAGCTCTGTGTTTTCTCTAACCTCA--ACAGCGTGGAAGTGTTAACTATGTTGCCTTTCCTGGAGCT--TTAatatatagtatatatttgtacatatatatttacagtatagaaatatttgta----------ta i calJac3.chr8 C 0 C 0 e canFam3.chr18 4083654 193 + 55844845 I a score=31254.000000 s hg38.chr1_KI270765v1_alt 126652 17 + 185285 ----------gatata-ATatatatatt s panTro4.chr1_GL389091_random 140282 18 + 179278 ----------gatatatttatatatatt i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 5685931 18 + 72422247 ----------tatatatttatatatatt i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr17 44123946 18 - 99891981 ----------tatatgtttatatatact i nomLeu3.chr17 C 0 C 0 s macFas5.chr3 124996408 18 - 192294377 ----------tatatatttatatatatt i macFas5.chr3 I 10 C 0 s papAnu2.chr3 122260777 18 - 180432695 ----------tatatatttatatatatt i papAnu2.chr3 I 10 C 0 s chlSab2.chr21 121516679 18 - 127223203 ----------tatatatttttatatatt i chlSab2.chr21 I 10 C 0 s calJac3.chr8 20059505 28 + 128169293 tatttgtgtatgtatattcatatatatT i calJac3.chr8 C 0 C 0 e rheMac3.chr3 124544991 339 - 198365852 I e canFam3.chr18 4083654 193 + 55844845 I a score=314692.000000 s hg38.chr1_KI270765v1_alt 126669 116 + 185285 atgtaaactccaagtgcatacttgtgcac------atatctgtaaacctttttttcctgttaatttgtacattatcagtttgttttaTAGACTCAAATAATTAAAGCTTCAAGGGAAAAATT s panTro4.chr1_GL389091_random 140300 112 + 179278 atgtaAACTCCAAGTGCATACTTGTGCAC------ATATCTGTAAACCTTTTTTTCCTACTAATTTGTACATTATCAGTTTGTTTTATAGACCCAAA----TAAAGCTTCAAGGGAAAAATT i panTro4.chr1_GL389091_random C 0 I 8552 s ponAbe2.chrUn 5685949 122 + 72422247 atgtaaactccaagtgcatacttgtgcacataattatatctgtaaacctttttttcctgttaatttgtacattatcagtttgttttaTGGACTCAAATAATTAAAGCTTCAAGGGAAAAATT i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr17 44123964 122 - 99891981 atgtaaactccaagtgcatacttgtgcacataattatatctgtaaacctttttttcctgttaatttgtacattatcagtttgttttaTAGACTCAAATAATTAAAACTTCAAGGGAAAACTT i nomLeu3.chr17 C 0 C 0 s rheMac3.chr3 124545330 118 - 198365852 ATGTAAACTCCAAGTGCATACTGGTGCACATA---ATATCTGTAAGCCTTTTTTT-CTGTGAATTTGTACATTATCAGTTTGTTTTATAGATTCAAATAATTGAAGTTTTAAGGGAAAAATT i rheMac3.chr3 I 339 C 0 s macFas5.chr3 124996426 118 - 192294377 atgtaAACTCCAAGTGCATACTGGTGCACATA---ATATCTGTAAGCCTTTTTTT-CTGTGAATTTGTACATTATCAGTTTGTTTTATAGATTCAAATAATTGAAGTTTTAAGGGAAAAATT i macFas5.chr3 C 0 C 0 s papAnu2.chr3 122260795 115 - 180432695 atgtaaactCCAAGTGCATACTTGTGCAC------ATATCTATAagccttttttt-ctgtgaatttgtaCAGTATCAGTTTGTTTTATAGATTCAAATAATTGAAGTTTCAATGGAAAAATT i papAnu2.chr3 C 0 C 0 s chlSab2.chr21 121516697 118 - 127223203 atgtaaatTCCAAGTGCATACTTGTGCACATA---GTATCTGTAAGCCTTTTTTT-CTGTGAATGTGTACATTATCAGTTTGTTTTACAGATTCAAACAATTGAAGTTTCAAGGGAAAAATT i chlSab2.chr21 C 0 C 0 s calJac3.chr8 20059533 118 + 128169293 TTGTAAACTCCAAGTGCATACGTGTGCACATA---ATATCTGTAAGCCTTTTCAC-ATATTAATTTGTACATTATCAGTTTGTTTTATAAACGCAAATAATTGAAGCCTCAAGGGAAAAATT i calJac3.chr8 C 0 C 0 e canFam3.chr18 4083654 193 + 55844845 I a score=24706.000000 s hg38.chr1_KI270765v1_alt 126785 10 + 185285 TAAATTTTCC s panTro4.chr1_GL389091_random 148964 10 + 179278 TAAACTTTCC i panTro4.chr1_GL389091_random I 8552 C 0 s ponAbe2.chrUn 5686071 10 + 72422247 TAAACTTTCC i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr17 44124086 10 - 99891981 TAAACTTTCC i nomLeu3.chr17 C 0 C 0 s rheMac3.chr3 124545448 10 - 198365852 GAAAGTTTCC i rheMac3.chr3 C 0 C 0 s macFas5.chr3 124996544 10 - 192294377 GAAAGTTTCC i macFas5.chr3 C 0 C 0 s papAnu2.chr3 122260910 10 - 180432695 GAAAGTTTCC i papAnu2.chr3 C 0 C 0 s chlSab2.chr21 121516815 10 - 127223203 GAAAGTTTCC i chlSab2.chr21 C 0 C 0 s calJac3.chr8 20059651 10 + 128169293 TAAACTTTCC i calJac3.chr8 C 0 C 0 e canFam3.chr18 4083654 193 + 55844845 I a score=4439532.000000 s hg38.chr1_KI270765v1_alt 126795 1369 + 185285 TATAGAGAAAAGACAAATATATAGGTGACAAATAATATT---TAGAGTGTAAG-------ACGCTTTTTAAAGGTATATTTGCAATTTGTGTCAAAACATTGAAATGTACATTTGTTATTTTAAC------------------------------------------------------------------------------------AATAAAAT-----TTCAATTAATTTA----AGCC----------AAATACATAGTATA----TGCAGAAAATTTAGCAATATATCTATGTAGCACCTTACTGTGCATTATTGTAACCAGCCGTCTAATATAAAGAATTAA----GGTAGCAGCTGCTTTCCAAATAGCGCA----TTTTTTT-CACAGACCTATTAAATAAGACAAATAACATTTAAACTTTATTTTTAAATTTGCAGAATAGCAGTTTTCAGCAGATGGTTTATTTTAGCAAATTCCATCTTCACATTGTGCTATGCTTTTATGAGTTCCAGCTGTTAACGGATACTATTTTACTGCTGAAACTATCCTGTGTGATATAATTGCTCATTATGTGCCTTAAAACACAAGCAATATAATTATTTTCAACTTGGAGCAAATTAAAATCTTATCAGCAATTT-AAAATCTCTAGAGTCATCTTCTTCTGGTTAATTATTTTAAACTTGTATTTTTCTCTTTATG-TTTTTAGTG-AGTTCTCTTATCAAGGAGAAGATCTCAAGGTGATTATTCTTTTTTTT-CTCTTC----CATGCACCTCGCAGGTGTGTTAATAATTTCATTTCTCAGAAAATATTCTTTCATATCTATCTTACAAGATGAGAGACCTTTTAATATCTTCCATTCGGATGTGATACCAGTAATGGAACATATTCCAGCTTCATGAATATGGTGATACAAATAGTTATTCATCTAACCTCTTTCAGTGCCAAATGTTTACTATACTC-AGTGAGTTACTCAGTTGACTGGTAATTTCTTCTGAAATCACTAATGAGAGGATCAGAGGTCTGGCTGTTGTCTGTACCTCATATGACTCCCAGTGCAGACAATGGTTTCTATGGAGCACAGAC-AGTTGAAAGGATTGACTTCCTGCCTAGAATAGTTTCTGCT------GTGCTTCTTATCC-TTCTTGT---GGAGATTTCAGATTACCTGAATTGCTTTTCTATCTTAAG-AAAA------AACGCAACAATTCTCCC----ACCTGAGAGGAATGTAAACTGAAGTAAGT-TAACAGAACCAATCCATAAAGTTTTTACATTGTTT--GTTGCAAAATGCAG--CGCTGGTGTCTCCATCACTAACCTTTTCTATCCCTCATTGC-TCTTTC-TTTGA-CTGCAATAGGATACCTCTATGCAAATCTGTATTCCCGAGACTGAGTGCCCTTTTGGTGAGCTATAAGCACACTCAAT---GGTAGGCTGAAATACTAGTTTTTATCTATGGCGAAATGGAATCATATCAGTGAATTTTTTAAAAAGGAAATTTAACT s panTro4.chr1_GL389091_random 148974 1372 + 179278 TATAGAGAAAAGACAAATGTATAGGTGACAAATAATATT---TAGAGTGTAAG-------ACGCTTTTTAAACGTATATTTGCAATTTGTGTCAAAACttttaaatatacatttgttattttaac------------------------------------------------------------------------------------tataaaat-----ttcaaataattta----aGCC----------AAATACATAGTATA----TGCAGAAAATTTAGCAATGTATCTATGTAGCACCTTACTGTGCATTACTGTAACCAGCCGTCTAATATAAAGAATTAATTAAGGTAGCAGCTGCTTTTCAAATAGCGCA----TTTTTTTTCACAGACCTATTAAATAAGACAAATAACATTTAAACTTTATTTTTAAATTTGCAGAATAGCAGTTTTCAGCAGATGGTTTATTTTGGCAAATTCCATCTTCACATTGTGCTATGCTTTTATGAGTTCCAGCTGTTAATGGATAATATTTTACTGCTGAAACTATCATGTGTGATATAATTGCTCATTATGTGCCTTAAAACACAAGCAATATAATTATTTTCAACTTGGAGCAAATTAAAATCTTATCAGCAATTT-AAAATCTCTAGAGTCGTCTTCTTCTGGTTAATTATTTTAAACTTGTATTTTTCTCTTTATG-TTTTTAGTG-AGTTCTCTTATCAAGGAGAAGATCTCAAGGTGATT---CTTTTTTTT-CTCTTC----CATGCACCTCGCAGGTGTGTAAATAATTTCATTTCTCAGAAAATATTATTTCATATCTATCTTACAAGATGAGAGACCTTTTAACATCTTCCATTCGGATGTGATACCAGTAATGGAAAATATTCCAGCTTCATGAATATGGTGATACAAATAGTTATCCGTCTAACCTCTTTCAGTGCCAAATGTTTACTATACTC-AGTGAGTTACTCAGTTGACTGGTAATTTCTTCTGAAATCACTAATGAGAGAATCAGAGGTCTGGCTGTTGTCTGTACCTCATATGACTCCCAGTGCAGACAATTGTTTCTATGGAGCAAAGAC-AGTTGAAAGGATTGACTTCCTGCCTAGAATAGTTTCTGCT------GTGCTTCTTATCC-TTCTTGC---GGAGATTTCAGATTACCTGAATTGCTTTTCTAACTTAAG-AAAA------ACCGCAACAATTCTCCC----ACCTGAGAGGAATGTAAACTGTAGTAAGTAGAGCAGAACCAATCCGTAAAGTTTTTACATTGTTT--GTTGCAAAATGCAG--CGCTGGTGTCTCCATCACTAACCTTTTCTACCCCTCATTGC-TCTTTC-TTTGA-CTGCAATAGGATACCTCTATGCAAATCTGTATTCCCGAGACAGAGTGCCCTTTTGGTGAGCTATAAGCACGCTCACT---GGTAGGCTGAAATACTAGCTTTTATCTATGGCGAAATGGAATCATATCAGTGAATTTTTTAAAAAGGAAATTTAACT i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 5686081 1373 + 72422247 TATAGAGAAAAGACAAATATATATGTGACAAATAATATT---TAGAGTGTAAG-------ACGATTTTTAAAGGTATATTTGCAATTTGTGTCAAAACATTTAAATACACATTTGTTACTTTAAC------------------------------------------------------------------------------------TATAAAAT-----TTCAAATAATTTA----AGCT----------AAATACATAGTATA----TGCCAAAAATTTAGCAATATTTGTATGTAGCACCTTACTGTGCATTACTGTAACCAACTGACTAATATAAAGAACTAATTAAGGTAGCACCTACTTTTCAAATATCTCA----TTTTTTT-CACAGACCTATTAAATAAGACAAATAACATTTAAACTTTATTTTTAAATTTGCAGAATAGTATTTTTCAGCAGATGGTTTATTTTAGCAAATTCCATCTTCACATTGTGCTATGCTTTTATGAGTTCCAGCTGTTAACGGATAATATTTTACTGCTGAATCTATCATGTGTGATATAATTGCTCATTATGTGCCTTAAAACACAAGCAATATAGTTATTTTCAACTTGGAGAAAATTAAAATCTTATCAGCAATTT-AAAAACTCTAGAGTTGTCTTCTTCTGGTTAATTATTTTAAACTTGTATTTTTCTCTTTATG-TTTTTAGTG-AGTTGTCTTATCAAGGAAAAGAACTCAAGCTGATTATTCTTTTTTTT-CTCTTC----CATCCACCTCGCAGGTGTGTTAATAATTTCATTTCTCAGAAAATGTTCTTTCATAGCCATCTTACAAGATGACAGAACTTTTAACATCTTCCATTCGGATGTGATACCAGTAACGGAAAATATTCCAGCTTCATGAATATGGTGATACAAATAGTTATCCGTCTAACCTCTTTCAGTGCCAAATGTTTACTTTACTC-AGTTAATTACTCACTTGACTGGTAATTTCTTCTGAAATCACTAATGAGAGGATCAGAGATCTGGCTGTTGTCTGTACTGCATATGACTCCCAGTGCAGACAATTGTTTCTAAGGAGCACAGAC-AGTTGAAAGGATTGACTTCCTGCCTAGAATAGTTTCTGCT------GTGCTTCTTATCC-TTCTTGT---GGAGATTTCAGAGAATCTGAATTGCTTTTCTATCTTAAG-AAAA------AACTCAACAATTCTCCC----ACCTGAGAGGAATGTAAACTGTAGTAAGT-TAGCAGAGGCAATCCGTAAAGATTTTACATTGTTT--GTTGTAAAATGCAG--CGTTGGTGTCTCCATCACTAACCTTTTCTATCCCTCATTGC-TCTTTC-TTTGA-CTGCAATAGGATACCTCTAGGCAAATCTGTATTCCCGAGACAGAGTGCCCTTTTGGTTAGCTATAAGTACACTCAAT---GGTAGACTGAAATATTAGTTTTTATCTATGGCGAAATGGAATCATATCAGTGATTTTTTTAAAAAGGAAATGTAACT i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr17 44124096 1368 - 99891981 TATAGAGAAAAGACAAATATATATGTGAC----AATATT---TAGAGTGTAAGTCGCTGAAAGCTTTTTAAAGGTATATTTGCAATTTGTGTCAAAACATTTAAATATACATTTGTTACTTTAAG------------------------------------------------------------------------------------TATAAAAT-----TTCAAATAATTTA----AGCT----------AAATACATATTATA----TACAGAAAATTTAGCAATATTTGTATGTAGCACCTTACTGTGCATTACTGTAACCAACTGTCTAATATAAAGAACTAATTAAGGTAGCACCTACATTTCAAATATCTCA----TTTTTTT-CACAGACCTATTAAATAAGACAAATAACATTTAAACTTTATTTTTAAATTTGCAGAATAATATTTTTCAGCAGATGGCTTATTTTAGCAAATTACATCTTCACATTGTGCTATGCTTTTATGAGTTCCAGCTGTTAACAGATAATATTTTACTGCTGAATCTATCATGTGTGATATAATTGCTCATAATGTGCCTTAAAACACAAGCAATATAGTTATTTTCAACTTGGAGCAAATTAAAATCTTATCAGCAATTT-AAAAAATCTAGAGTTGTCTTCTTCTGGTTAATTATTTTAAACTTTTATTTTTCTCTTTAGG-TTTTTAGTG-AGTTGTCTTATCAAGGAGAAGAATTCAAGCTGACTATTCTTTTTTTT-CTCTTC----CATCCACCTTGCAGGTGTGTTAATAATTTCATTTCTCAGAAAATGTTCTTTCATATCCATCTTACAAGATGAGAGATCTTTTAACATCTTCCATTCAGATGTGATAACAGTAATGGAAAATATTCCAGCTTCATGAATATGGTGATACAAATAGTTATCCATCTAACCTCTTTCAGTGCAAAATGTTTACTTTACTC-AGTGAATTACTCAGTTGACTGGTAATTTCTTCTGAAATCACAGATGAGAGGATCAGAGGTCTGCCTGTTGTCTGTACCTCGTATGACTCCCAGTGCAGACAATTGTTTCTATGGAGCATAGAC--------AGAATTGACTTCCTGCCTAGAATAGTTTCTGCT------GTGCATCTTACCC-TTCTTGT---GGAGATTTCAGATTATCTGAATTGCTTTTCTATCTTAAG-AAAA------AACTCAACAGTTCTCCC----ACCTGAGAGGAATGTAAACTGCAGTAAGT-TAGCAGAAGCAATCTGTAAAGTTTTTACATTGTTT--GTTGTAAAATGCAG--CTTTGGTTTCTCCATCACTAAATTTTTCTATCCCTCATTGC-TTTTTC-TTTGA-CTGTGATAGGATACCTCTAGGCAAATCTGTATTCCCGAGACAGAGTGCCCTTTTGGTTAGCTATAAGTACACTCAAT---GGTAGGCTGAAATATTAGTTTTTATCTACGGTGAAATTGAATCATATCAGTTATTTTTTT-AAAAGGAAATTTAACT i nomLeu3.chr17 C 0 C 0 s rheMac3.chr3 124545458 1375 - 198365852 TGTAGAGAAAAGACAAATTTATATATGACAAATAATACT---TAGAGTGTAAGTCGCTGAAAGCTTTTTAAAGGTATATTTGCAATTTGTATCAAAACATTTAAATACACATTTGTTACTTT----------------------------------------------------------------------------------------ATAAAAT-----TTCAAATAATTTA----AGCT----------AAATACACAATATA----TACAGAAAATTTAGCAATATTTGTATGTAGCACCTTACAGTGCATTACTGTAACCAAGTGTCTAATATAAAGAACTAATTAAGGTAGCACCTCCTTTTCAAATATCTCA----TTTTTTT-CACAGGCCtattaaataatacaaataacattttaactttatttttaaatttGCAGAATAATAATTTTTAGCAGATGGTTTATTTTAGCAAGTTCCATCTTCACATTGTGCTATGCCTTTATGAGTTCCAGCTGTTAACAGATAATATTTTACCACTGAATCTATCATGTGTGATATAATTGCTCATTATGTGCCTTAAAACACAAGCAATATAGTTATTTTCAACTTGGAGCAAATTAAAATCTTACCAGCAATTA-AAAAAATCTAGAGTTGCCTTCTTCTGGTTAATTATTTTAAACTTGTATTTTTCTCTTTATG-TTTTTAGTG-AGTTGTCTTATCAAGAAGAAGAACTCAAGCTGATTATTCTTTTTTTTCCTCTTC----CATCCACCTTGCAGGTGTGTCAATAATTTCATTTCTCAGAAAATATTCTTTCATATCCATCTTACAAGATGAGAGGTCTTTTAACATCTTCCATTCAGATGTGATACCAGTAGTGGAAAATATTCCAGCTTCATGAATATGGTGATGCAAATAGTTATCCGTCTAACCTCTTTCAGTGCCAAATGTTTACTTTACTC-AGTGAATTACTCAGTTGACTGGTAA-TTCGTCTGGAGCCACAAATGAGAGGATCAGAGGTTTGGCTGTTGTCCGTACCTCATATGACTCCCAGTGCAGACAACTGTTTCTGTGGAGCACAGAC-AGTCGAAAGGATTGACTTCCTGCCTAGAATAGTTTCTACT------GTGCTTCTTATCC-TGCTTGT---AGAGATTTCAGATTCTCTGAATTGCTTTTCTGTCTTAAG-AAAA------AACTCAACAATTCTCCC----ACCTGAGAGGAATGTAAACTGTAGTAAGT-TAGCTGAAGCAATCTGTAAAGTTCTTACATTGTTT--GTTGTAAAATGCAG--TGTTGCTGTCTCCATCACTAACCTTTTCTATCCCTCATTGC-TCTTTC-TTTGA-CTGCAATAGGATACCTCTAGGCAAATCCATATTCCCGAGACTGAGTGCCCTGTGGGTTAGCTATAAGTACACTCAGT---GGTAGGTTGAAGTATTAGTTTTTATCTATGGCGAAATGGAATCACATCAGTGATTTTTTTT-AATGGAAATTTAACT i rheMac3.chr3 C 0 C 0 s macFas5.chr3 124996554 1377 - 192294377 TGTAGAGAAAAGACAAATTTATATATGACAAATAATACT---TAGAGTGTAAGTCGCTGAAAGCTTTTTAAAGGTATATTTGCAATTTGTGTCAAAACATTTAAATACACATTTGTTACTTT----------------------------------------------------------------------------------------ATAAAAT-----TTCAAATAATTTA----AGCT----------AAATACACAATATA----TACAGAAAATTTAGCAATATTTGTATGTAGCACCTTACAGTGCATTACTGTAACCAAGTGTCTAATATAAAGAACTAATTAAGGTAGCACCTCCTTTTCAAATATCTCA----TTTTTTT-CACAGGCCTATTAAATAATACAAATAACATTTTAACTTTATTTTTAAATTTGCAGAATAATAATTTTTAGCAGATGGTTTATTTTAGCAAATTCCATCTTCACATTGTGCTATGCCTTTATGAGTTCCAGCTGTTAACAGATAATATTTTACCACTGAATCTATCATGTGTGATATAATTGCTCATTATGTGCCTTAAAACACAAGCAATATAGTTATTTTCAACTTGGAGCAAATTAAAATCTTACCAGCAATTA-AAAAAATCTAGAGTTGCCTTCTTCTGGTTAATTATTTTAAACTTGTATTTTTCTCTTTATG-TTTTTAGTG-AGTTGTCTTATCAAGAAGAAGAACTCAAGCTGATTATTCTTTTTTTTCCTCTTC----CATCCACCTTGCAGGTGTGTCAATAATTTCATTTCTCAGAAAATATTCTTTCATATCCATCTTACAAGATGAGAGGCCTTTTAACATCTTCCATTCAGATGTGATACCAGTAGTGGAAAATATTCCAGCTTCATGAATATGGTGATGCAAATAGTTATCCGTCTAACCTCTTTCAGTGCCAAATGTTTACTTTACTC-AGTGAATTACTCAGTTGACTGGTAATTTCGTCTGGAGTCACAAATGAGAGGATCAGAGGTTTGGCTGTTGTCCGTACCTCATATGACTCCCAGTGCAGACAATTGTTTCTGTGGAGCACAGAC-AGTCGAAAGGATTGACTTCCTGCCTAGAATAGTTTCTACT------GTGCTTCTTATCC-TGCTTGT---AGAGATTTCAGATTCTCTGAATTGCTTTTCTGTCTTAAG-AAAA------AACTCAACAATTCTCCC----ACCTGAGAGGAATGTAAACTGTAGTAAGT-TAGCTGAAGCAATCTGTAAAGTTCTTACATTGTTT--GTTGTAAAATGCAG--TGTTGCTGTCTCCATCACTAACCTTTTCTATCCCTCATTGC-TCTTTC-TTTGA-CTGCAATAGGATACCTCTAGGCAAATCCATATTCCCGAGACTGAGTGCCCTGTGGGTTAGCTATAAGTACACTCAGT---GGTAGGTTGAAGTATTAGTTTTTATCTATGGCGAAATGGAATCACATCAGTGATTTTTTTTAAATGGAAATTTAACT i macFas5.chr3 C 0 C 0 s papAnu2.chr3 122260920 1377 - 180432695 TgtagagaaaagacaaatttatatATGACAAATAATACT---TAGAGTGTAAGTCGCTGAAAGCTTTTTAAAGGTATATTTGCAATTTCTgtcaaaacatttaaatacacatttgttacttt----------------------------------------------------------------------------------------ataaaat-----ttcaaataattta----agct----------aaatacacaatata----tacagaaaatttaGCAATATTTGTATGTAGCACCTTACAGTGCATTACTGTAACCAAGTGTCTAATATAAAGAACTAATTAAGGTAGCACCTCCTTttcaaatatctca----ttttttt-cacaggcctattaaataatacaaataacattttaactttatttttaaatttgcagaatagtaatttttagcagatggtttattttaGCAAACTCCATCTTCACATTGTGCTATGCCTTTATGAGTTCCAGCTGTTAACAGATAATATTTTACCACTGAATCTATCATGTGTGATATAATTGCTCATTATGTGCCTTAAAACACAAGCAATATAGTTATTTTCAACTTGGAGCAAATTAAAATCTTAccagcaatta-aaaaaatctgGAGTTGCCTTCTTCtggttaattattttaaacttgtatttttctctttatg-tttttagTG-AGTTGTCTTATCAAGAAGAAGAACTCAAgctgattattcttttttttcctcttc----catcCACCTTGCAGGTGTgttaataatttcatttctcagaaaatattctttcataTCCATCTTACAAGATGAGAGGCCTTTTAACATCTTCCATTCAGATGTGATACCAGTAGTGGAAAATATTCCAGCTTCATGAATATGGTGATGCAAATCGTTATCCGTCTAACCTCTTTCAGTGCCAAATGTTTACTTTACTC-AGTGAATTACTCAGTTGACTGGTAATTTCGTCTGGAGTCACAAATGAGAGGATCAGAGGTTTGGCTGTTGTCCGTACCTCATATGACTCCCAGTGCAGACAATTGTTTCTGTGGAGCACAGAC-AGTCGAAAGGATTGACTTCCTGCCTAGAATAGTTTCTACT------GTGCTTCTTATCC-TGCTTGT---AGAGATTTCAGATtctctgaattgcttttctgtcttaag-aaaa------aactcaacaattctccc----acctgagAGGAATGTAAACTGTAGTAAGT-TAGCTG-AGCAATCCGTAAAGTTCTTACGTTGTTT--GTTGTAAAATGCAG--TGTTGCTGTCTCCATCACTAACCTTTTCTATCCCTCATTGCTTCTTTC-TTTGA-CTGCTATAGGATACCTCTAGGCAAATCCGTATTCCCGAGACAGAGTGCCCTGTGGGTTAGCTATAAGTACACTCAGT---GGTAGGTTGAAGTATTAGTTTTTATCTATGGCGAAATGGAATCatatcagtgatttttttaaaatggaaatttaact i papAnu2.chr3 C 0 C 0 s chlSab2.chr21 121516825 1378 - 127223203 TGTAGAGAAAAGACAAATATATATATGACAAATAATACT---TAGAGTGTAAGTCGCTGAAAGCTTTTTAAAGGTATATTTGCAATTTGTGTCAAAACATTTAAATATACATTTGTTACTTT----------------------------------------------------------------------------------------ATAAAAT-----TTCAAATAATTTA----AGCT----------AAATACACAATATA----TACAGAAAATGTAGCAATATTTGTATGTAGCACCTTACAGTGCATTACTGTAACCAACTGTCTAACATAAAGAACTAATTAAGGTAGCACCTCCTTTTCAAATATCTCA----TTTTTTT-CACAGGCCTATTAAATAAGACAAATAACATTTTAACTTTATTTTTAAATTTGCAGAATAATATTTTTCAGCAGATGGTTTATTTTAGCAAATTCCATCTTCACATTGTGCTATGCCTTTATGAGTTCCAGCTGTTAACGGATAATATTTTACCACTGAATCTATCATGTGTGATATAATTGCTCATTATGTGCCTTAAAACACAAGCAATGTAGTTATTTTCAACTTGGAGCAAATTAAAATCTTACCGGCAATTA-AAAAAATCTAGAGTTGCCTTCTTCTGGTTAATTATTTTAAACTTGTATTTTTCTCTTTATG-TTTTTAGTG-AGTTGTCTTATCAAGAAGAAGAACTCAAGCTGATTATTCTTTTTTTT-CTCTTC----CATCCACCTTGCAGGTGTGTTAATAATCTCATTTCTCAAAAAATATTCTTTCATATCCATCTTAAAAGATGAGAGGCCTTTTAACATCTTCCATTCAGATGTGATACCAGTAGTGGAAAATATTCCAGCTTCATGAATATGGTGATGCAAATAGTTATCCGTCTAACCTCTTTCAGTGCCAAATGTTTACTTTACTC-AGTGAATTACTCTGTTGACTGGTAATTTCGTCTGGAGTCACAAATGAGAGGATCAGAGGTTTGGCTGTTGTCCGTACCTCATACGACTCCCAGTGCAGACAATTGTTTCCATGGCGCACAGAC-AGTCGAAAGGATTGACTTCCTGCCTAGAATAGTTTCTACT------GTGCTTCTTATCC-TGCTTGT---GGAGATTTCAGATTCTCTGAATTGCTTTTCTGTCTTAAGAAAAA------AACTCAACAATTCTCCC----ACCTGAGAGGAATGTAAACTGTAGTAAGT-TAGCTGAAGCAATCCATAAAGTTCTTACATTGTTT--GTTGTAAAATGCAG--CGTTGCTGTCTCCATCACTAACCTCTTCTATCCCTCATTGC-TCTTTCTTTTGA-CTGCGATAGGATACCTCTAGGCAAATCCGTATTCCCGAGATAGAGTGCCCTGTGGGTTAGCTATAAGTACACTCAGT---GGTAGGTTGAGGTATTATTTTTTATCTATGGCGAAATGGAATCGTATCAGTGATTTTTTTAAAATGGAAATTTAACT i chlSab2.chr21 C 0 C 0 s calJac3.chr8 20059661 1455 + 128169293 TATAGAGAAAAGACAAATGTATATATGACAAATAATATT---TAGAGTGTAAGTTGCTGAAAACCTTATAAAGATACATTTGCAATTCATGTCaaaaaatttaaatatacatttgttactttaactataaaatttcaaattttactttaaatttcaaataagttaagtataaaatttcaattttactttaaattttaaataatttactttataaaat-----ttcaaataatttactttaactataaaatttCAAATACACAATATA----TACAGAATATTTGGAAATATTTATATGTAGCACCT----GTGAATTATTATAACCAACTGTCTAATATAAGGAACTGATTAAGGTAGCACCTACTTTTCGAATATGTCA----TGTTTTT-CATAGACCTGTTAAATAAGGCAAATAACGTTTTAACTCTATTTTTAAATTTGCAGAATAGTATTTTTCAGCAGATGG-TTATTTTAGCAAATTTCATCTTCACATTGTGCTATGCTTTTATGAGTTCCAGCTGTTAACGAATAATATTTTACTGCTGAATCTATCATGTGTGATATAATTGCTCATTATGTGCCTTAAAACACAAGCAATATAGTTATTTTCATCTTGGAGCAAATTAAAATCTTATCAGCAATTT-AAAAAATCTAGAGTTGTCTTCTGC-------TTATTTTAATATTGTATTTTTCTCTTTATG-TTTTTAGTG-AGTGGTCTTATCAAG---AAGAGCTCAAGCTGATTATTCTTTTTCTC-CTCCTC----CAG----CTTGCAGGTGTGTTAATAATTTCATTTCTGAGAAAATGTTCTTTTCTATCCATTTTACAAGATGAGAGACCTTTTAAGATCTTCCATTCAGAAGTGATACCAGTAGTGGAAAATATTCCAGCTTCATGAATATAGTGATACAAATAGTTATCTGTCTACCCTCTTTCAGTGCCAAATGTTTGCTTTACTC-AATGAATTACTCAGTTGACTGGAAATTTGTTCTGCAATCACAAATGAGAGGATCAGAACTTTGGCTGTTGTCTGTACCTCGTATGACTCCCAGTGCAGGAAGTTGTTTCTATGGAGCACAGAC-AGTTGAAGGGATTGACTTCCTGCCTAGAATGGTTTCTGCT------GCGCTTCTTATCC-TGCTTGT---GGAGATCTCAGCTTATCTGAATTACTTTTCTGTCTTAAG-CAAA------ATCTCAATGATTCTCCC----ATCTGAGAGGAATGTAAAATGTAATAAGT-TAGTTGTAGGAAT-TGTAAAGTTCCTACA----TT--GTTGTAAAACACAG--CACTGGTGTCTACACAACTACTTTTTTCTGTCTCTCATTGC-TCTTTC-TCTGA-CTGTGATAGGACACCTCTAGGCAAGTCTGTATTCCAGAGACAGAGTGCCCTTTGGGTTAGCTGTGAGTACACTCATTAAGGGTAGGCTGAAATACTAGTTTTTAT-TATGGTGAAATGGAATCATATTAGTGATTTTTTT-AAATGGAAATTTAATT i calJac3.chr8 C 0 C 0 s canFam3.chr18 4083847 1399 + 55844845 tatagagagaagacaga--catgtgggattaatatttctgcctagaatgtaaactgttgaaacctttatacagctatatttgcaatatgtagtaaaaactttgaatatgcatttatttccttaac------------------------------------------------------------------------------------tatgaaatttatcttcaaataattta----tact----------gaaTGCACAATATACATGTATGAGGAATTTAGCAATAATTATATGCAGCTCCACACTGTACACTACTGTAACCAATTGTGTAATACAGGAAATTAATTAAAGTAGCACCTACTTTTC-ATTATCTCATCATTTTTTTT-CACAAATCTATTAAATAAGGCAAATAATGTTTTAACTTTATTTTT-AATTTGCAGAATACTATTTTTCAGCAGATGGTTTATTCTAACAAACTTCATGTTCACACTGTGCTATGCTTTTATGAGTTCCAGCTGTTAACTGATAATATTTCACTGCTGAATCTATGATGTGTGATATAATTGCTCATTATGGGCCTTAAAACACCAGTAATATAGTTATTTTCAACTTCGAGCAAATTAAAATCTTATCAGCATTTTAAAAAAATCTACAGTTGTCTTCTTCTGGTTAATTATTTTAAACTTGTGTTTTTCTCTGTATATTTTTTAATGTTATTATTTTGTGAAGACTAAAAATTCAGGCTGATTATTGCTTCCCCT-CCCTACCCCGCCTTCAATTTGCAGGTGGGTTAATAGTTCCATTTCTGAGGAAATAATCTTTCCTATCTGGCTTACCAGCTGAGA-ATCCTTTAAGTTCTTCTAGT-AGATATAATAGCAGTAGTGGCAA--AATCCAACTTCATGGATACTGTGAAACAAATGGATCTCTCTCAAGC----TCTATTGGCAAATGTTTGGTGTATTCAAGAGCATGACTCAGTTGACTGGT--CTTTTTCTGAAATTCCAAATGGTAGACT------TTGGGCTATTTTCTGTA---------ACTCCAAGTGTAGACCATCGTGTCTTTGGAGCACAGAAGAGTTGAAAGCATTGACTTCATGTTTAGACTAGTTTCTGCCCAGAGAGTGCTCTGTGTCCACTCTTGTCTGACAGATCGCAGATAATCTGGATTACTTTTCTGTTTTAAG-AAAAACAAACACCTCAACAAGTCTCTTTCTAAGCTGATAGAAATATAAAATGTA-CGAGT-TAGTTGAAGGAATCCATAATGCTTCTGTAAAGTTTAAGTTCTACAATACAGGATTTTGATGTCTCCACTACTCACCTTCTATAGCCCTTATTCC-TCTTCA-TTTCAGCTATCATTGGATACGCTTAACAAAATCTACATCCCAGAGACAAAGTGCCCTTTGCTTTACATACGAGTATTCTTCTTAAAGATAGGCTGAATTATTTGGCTTTATCTATGGCAAAAC--AATCATTTTATTAAATTTTT--AAATGGAATTTTAACT i canFam3.chr18 I 193 I 14651 a score=159386.000000 s hg38.chr1_KI270765v1_alt 128164 57 + 185285 CTtgctatggtttgaatgcttgccccttcc-aatctcatgttaaaatttgatccccaa s panTro4.chr1_GL389091_random 150346 57 + 179278 CTtgctatggtttgaatgcttgccccttcc-aatctcatgttaaaatttgatccccaa i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 5687454 58 + 72422247 CTtgctatggtttgaatgcttgccccttccaaatctcatgttaaaatttgatccccaa i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr17 44125464 58 - 99891981 CTtgctacggtttgaatgcttgccccttccaaatctcatgttaaaatttgatccccag i nomLeu3.chr17 C 0 C 0 s rheMac3.chr3 124546833 58 - 198365852 CTtgctatggtttgaaagcttgccccttccaaatctcatgctgaaatttgataccaag i rheMac3.chr3 C 0 C 0 s macFas5.chr3 124997931 58 - 192294377 CTtgctatggtttgaaagcttgccccttccaaatctcatgctgaaatttgataccaag i macFas5.chr3 C 0 C 0 s papAnu2.chr3 122262297 58 - 180432695 CTTACTATGGTTTGAAAGCttgccccttccaaatctcatgctgaaatttgacACCAAG i papAnu2.chr3 C 0 C 0 s chlSab2.chr21 121518203 58 - 127223203 CTtgctatggtttgaaagcttgccccttccaaatctcatgctgaaatctgataccaag i chlSab2.chr21 C 0 C 0 s calJac3.chr8 20061116 58 + 128169293 TTtgctaccgtttgaatgcttgtcctctccaaatctcatgttaaaatttgatccccaa i calJac3.chr8 C 0 I 310 e canFam3.chr18 4085246 14651 + 55844845 I a score=2234462.000000 s hg38.chr1_KI270765v1_alt 128221 849 + 185285 tgttgcaggtggggctcactgggaggtgtttggtcatggggttggaccttcatgaatggataaaactctcccttagAAATCTAAAGCTATCCTCCCTCCTCGGTGCCCTCAGGAATGAGTGTACCATTCCTTATTCACCTATGATTACCCCACCCATCctttttgagatattgactacatgtatgttacactgatgcacattgtctgacctatgagtgagtttctggttttcttatttcagtttaccgtttgtcctttagtttgtaatgcttccaatttgttctataaatgttctgatgttagggtaaaatccattacttattctatctcatggaatttttatttcaagtatttatttttcatctatatatgtcacatttttcattttataacttttatttttctcctatatttaattttcatttaagtaccttgacatatatatgtatttatcta----------tatgtatttataaaatatat-ttactttaaggatcttgaaatttccttcttgtctgtcatttataaatgactta-tttttatcctgttaatatatattttaattatatatgtcttacagcttctttgcatttcagag---tttttttttttggg--tattttgatgttatgctattgaatatctagattttattggctacctttgaataatg----ttgtgacaggcagttcagtaacttcaggatgagtatttgtctgttgtt---ttaaatcttctctttaaactttgttgagttagtctagagccatctgtaatttggagctaaatgagcactgtcactagggcatggacctccagtggtctttactgaatatcctgGAGGTACAGAGGGGATTCCCTTCTCTG s panTro4.chr1_GL389091_random 150403 849 + 179278 tgttgcaggtggggctcactgggaggtgtttggtcatggggttggaccttcatgaatggataataccctcccttagAAATCTAAAGCTATCCTCCCTCCTCGGTGCCCTCAGGAATGAGTGTACCATTCTTTATTCATCTGTAATTACCCCACCCATCctttttgagatattgattacatgtatgttacactgatgcatattgtctgacatatcagtgagtttctggttttcttattttagtttaccatttgtcctttagtttgtaatgcttctaatttgttgtataaattttctgatgttagggtaaaatccattacttattctatctcatggaatttttatttcaagtatttatttttcatctatatatgtcacatttttcattttataacttttatttttctcctatgtttaattttcatttaagtaccttgacatatatatgtatttatcta----------tatgtatttataaaatatat-ttactttaaggaccttgAAATTTCCTTCTTTTCTGTCATTTATAAATTACTTA-TTTTTATCCTGTTAATATATGTCTTAAttatatatgtcttacggcttctttgcatttcagag---tttttttt---ggg--tattgtgatgttatgctattgaatatctagattttattggctacctttgaacaatg----ttgtgacacgcagttcagtaacttcaggatgagtatttgtctgttgttgttttaaatcttctctttaaactttgttgagttagtctagagccatctgtaatttggagctaaatgagcactgtcactagggcatgaacctccagtggtctttactgaatatcttgGAGGTACAGAGGGGATTCCCTTCTCTG i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 5687512 854 + 72422247 tgttgcaggtggggattactgggaggtgttgggtcatggggttggaccttcatgaatggataataccctcccttaggAATCTCAAGCTATCCTCCCTCTTCGGTGCCCTCAGGAATGAGTGTACCATTCTTTATTCAACTATAATTCCCCCACCCATCctttttgagatattaattacatgtatgttacactgctgcatattgtctcacgtatcagtgagtttctggctttcttattttagtttaccctttgtcctttagtttgtaaagcttctatttttttctataaattttctgaTGTTAGGGTAAaatccattacttattctatctcatggaatttttatttcaaatatttatttttcatctatatatgtcacatttttcattttataacttctatttttctcctatgttcaattttcatttaagtaatttgacatatatatgtatttatcta----------tatgtacttatacaatatat-ttactttaaggaccttgaaaattccttcttctctgtcatttataaatgactta-tttttatcatgttaatgtatatcttaataatatat-tcttccggcttctttgcatgtcagaggtttttttttttttggg--tactttgatgttatgctattgaatatctagattttattggctacctttgaacaatg----ttgtggcaggcagttcagtaacttcaggatgagtatttttctgttgttgttttaaatcttctctttaaactttgttgagttagtctagagccatctgtaatttggagctaaatgagcactgtcactagggcatgaacctccagtggtctttactggatatcctggaggtacagaggggattcccttctctg i ponAbe2.chrUn C 0 I 5219 s nomLeu3.chr17 44125522 851 - 99891981 tgttgcaggtggggcttact-ggaggtgttgggtcatggggatggaccttcatgaatggataataccctcccttaggAAACTCAAACCATCTTCCCTCCTCGGTGCCCTTAGGAATGAGAGTACCATTCTTTATTCAACTATAATTCCCCCACCCATCctttttgagatatcagttacatgtatgttacactgctgcatattggctcacatatcagtgagtttctggctttcttattttagtttaccctttgtccttcagtttgtaaagcttcta-ttttttctataaattttctgatgttagggtaaaatccattacttactctatctcatggaatttttatttcaaatatttatttttcatctatacacgtcaca-ttttcattttataacttctatttttcttctgtgttcaattttcatttaagtaatttgacatatatatatatttatcta----------tatgtatttataaaatatatattactttaaggaccttgaaaattccttcttctctgtcatttataagtgactta-tttttatcctgttaatatatatcttaataatgtatatcttccagcttctttgcatgtcagag---gtttctttggggggcatattttgatgttatggtattgaatatgtagattttattggctacctttgaacaatg----ttgtggcaggcagttcagtaacttcaagatgagtatttttctgttgttgttttaaatcttctctttaaactttgttgagttagtctagagccatctgtaatttgcagctaaatgagcactatcactagggcatgaa-ctccagtggcctttactgaatatcctggatgtacagagaggattcccttctctt i nomLeu3.chr17 C 0 C 0 s rheMac3.chr3 124546891 779 - 198365852 tgttgcaggtagggcttactgggaggtgttgggtcatgggaatggaccctcaggaacggataatacccct-----------------------------------ccctcaggaatgagtgtcccattctTTATTCAACTGTAATTCCCCCACCCAccctttttgagataccagttacatgtatgttacactgctgcatattgtctcatgtatcagtgagtttctggcttttttattttagtttcccctttgtccttcagtttgtaaagcttctatttttgtctataaatcttctgatgttagggtaaaatccattacttattgtatctcatggaatttttatttcaaatatttatttttcatctatacatgtcacacttttcattttataacttctatttttctcctATGTTCAATTTTCATTTAAGTAATTTGACatata----tatttatcta----------tatatctttataaaatatata------------------------------CTCTGTCATTTATAAATGACCTA-TTTTTATCCTGTTAATATATATCTTAATAATATatatcttcctgcttctttgcatgtcagaa---attttg-----ggg--tattttgatgttatgctatccaatatctggattttattggctacctttgaacagtg----ttgtggcaggcagttcagtaactttaggatgagtattttcctgttgctgttttaaatcttctctttaaacattgttgagttattctagagccatctgtaatttagagctaactgagcactattactagggcatgaacctccagtggtctttactgaatatcttggatgttcagaggggatttccttctctg i rheMac3.chr3 C 0 I 15233 s macFas5.chr3 124997989 809 - 192294377 tgttgcaggtagggcttactgggaggtgttgggtcatgggaatggaccctcaggaacggataatacccct-----------------------------------ccctcaggaatgagtgtcccattctTTATTCAACTGTAATTCCCCCACCCAccctttttgagataccagttacatgtatgttacactgctgcatattgtctcatgtatcagtgagtttctggcttttttattttagtttcccctttgtccttcagtttgtaaagcttctatttttgtctataaatcttctgatgttagggtaaaatccattacttattgtatctcatggaatttttatttcaaatatttatttttcatctatacatgtcacacttttcattttataacttctatttttctcctATGTTCAATTTTCATTTAAGTAATTTGACatata----tatttatcta----------tatatctttataaaatatatatTACTTTAAGGACCTTGAAAATTCCTTCTTCTCTGTCATTTATAAATGACCTA-TTTTTATCCTGTTAATATATATCTTAATAATATatatcttcctgcttctttgcatgtcagaa---attttg-----ggg--tattttgatgttatgctattcaatatctggattttattggctacctttgaacagtg----ttgtggcaggcagttcagtaactttaggatgagtattttcctgttgctgttttaaatcttctctttaaacattgttgagttattctagagccatctgtaatttagagctaactgagcactattactagggcatgaacctcccgtggtctttactgaatatcttggatgttcagaggggatttccttctctg i macFas5.chr3 C 0 C 0 s papAnu2.chr3 122262355 809 - 180432695 TGTTGCAGGTAGGGCTTACTGGGAGGTGTTGGGTCATGGGAATGGACCCTCACGAACGGATAATACCCCT-----------------------------------CCCTCAGGAATGAGTATCCCATTCTTTATTCAACTGTAATTCCCCCACCCACCCTTTTTGAGATACCAGTTACATGTATGTTACACTGCTGCATATTGTCTCGTGTATCAGTGAGTTtctggcttttttattttagtttcccCTTTGTCCTTCAGTTTGTAAAGCTTctatttttgtctataaatcttctgATGTTAGGGTAAAATCCATTACTTATTTTATCTCatggaatttttatttcaaatatttattttccatctatACATGTcacacttttcattttataacttCTATTTTTCTCCTATGTTCAACTTTCATTTAAGTAATTtgacatata----tatttatcta----------tatatctttataaaatatatattactttaagGACCTTGAAAATTCCTTCTTCTCTGTCATTTATAAATGACGTA-TTTTTATCCTGTTAATATATATCTTAATAATATATatcttcctgcttctttgcatgtcAGAA---ATTTTG-----GGG--TATTTTGATGTTGTGCTATTTAATATCTGGATTTTATTGGCTACCTTTGAACAGTG----TTGTGGCAGGCAGTTCAGTAACTTTAGGATGAGTATTTTCCTGTTGCTGTTTTAAATCTTCTCTTTAAACTTTGTTGAGTTATTCTAGAACCATCTGTAAATTAGAGCTAAATGAGCACTATCACTAGGGCATGAACCTCCAGTGGTCTTTACTGAATATCTTGGATGTTCAGAGGGGATTCCCTTCTCTG i papAnu2.chr3 C 0 C 0 s chlSab2.chr21 121518261 809 - 127223203 tgttgcaggcagggcttactgggaggtgttgggtcatgggaatggaccctcacgaagggataatacccct-----------------------------------ccctcaggaatgagtgtcccattctTTATTCAACTGTAATTCCCCCACccaccctttttgagataccaattacatgtatgttacactgctgcatattgtctcatgtatcagtgagtttctggctttcttattttagtttcccctttgtccttcagtttgtaaagcttctatttttgtctataaatcttctgatgttagggtaaaatccattacttattgtatctcatggaatttttatttcaaatatttatttttcatctatacatgtcacacttttcattttataacttctatttttctcctatgttcaactttcatttaagtaatttgacatata----tatttatcta----------tatatctttataaaatatatattactttaaggaccttgaaaattccttcttctctgtcatttataaatgaccta-tttttatcctgttaatatatatcttaataatatatatcttcctgcttctttgcatgtcagaa---attttg-----ggg--tattttgatgttatgctattcaatatctggattttattggctacctttgaacagtg----tcgtggcaggcagttcagtaactttaggatgaatattttcctgttgctgttttaaatcttctctttaaactttcttgagttattctagagccatctgtaatttagagctaaatgagcactatccctagggcatgaacctccagtggtctttactgaatatcttggatgttcagaggggattcccttctctg i chlSab2.chr21 C 0 I 13535 s calJac3.chr8 20061484 821 + 128169293 tgttgaaggtgggacctactgggagatgttgggtcatggggatggaccctcatgaatggataatatcct------------------------------------ccctcaggAATGAGTTTACTATTAGTTATTCAACTGTAATTCCCCCACACATCctttttgagataccaattacacgtatgttacatggctgcatattgtctcatggatcagtgagtttctggctttcctattttagtttcccctttgtccttcagtttgtaaagcttctattTTTGTCTGTACATTTTCTGATGTTAGGGTAAAATTCATTACTCATTCTGTCTCTTGGAATTTTTATTTTAAACATTTATTGTTCATCTATACATGTGACA-------TTTTGTAACTTCTATTTTTTCCCTATGTTCAGTTTTCATTTAAGAAATTTGatacatatatgtatttatgtacgtgtgtgtgtgtgtgtttatAAAATACATATTACTTTAAGGACCTTGAAAATTCCTTCTTCTCTGTCATTTATAAATGACTTACTTTTTTTCCTGTTAACCTATATCTTAATAATACatatcttcctgtttctttgcatatcaggg----ttttgttgggggt--aattttgatgttatgctgttgaatatctggaatttactggctacctctcaatagcgtttattgtggcaggcagttcagtgacttcagtatcagtatttttctgttgtt---ttaaatcttctctttaaactttgttgagtttgtccagatccatctttaattcagagctaaccgagcactatcactagggcgtgaacctccattggtctttactgaatatcctggatgttcagaggggattgccctctctg i calJac3.chr8 I 310 C 0 e canFam3.chr18 4085246 14651 + 55844845 I a score=3896.000000 s hg38.chr1_KI270765v1_alt 129070 5 + 185285 ATTAG s panTro4.chr1_GL389091_random 151252 5 + 179278 ATTAG i panTro4.chr1_GL389091_random C 0 C 0 s nomLeu3.chr17 44126373 5 - 99891981 gctag i nomLeu3.chr17 C 0 I 11875 s macFas5.chr3 124998798 5 - 192294377 gctgg i macFas5.chr3 C 0 I 15361 s papAnu2.chr3 122263164 5 - 180432695 GCTGG i papAnu2.chr3 C 0 I 13448 s calJac3.chr8 20062305 5 + 128169293 gttgg i calJac3.chr8 C 0 I 13513 e chlSab2.chr21 121519070 13535 - 127223203 I e rheMac3.chr3 124547670 15233 - 198365852 I e ponAbe2.chrUn 5688366 5219 + 72422247 I e canFam3.chr18 4085246 14651 + 55844845 I a score=371704.000000 s hg38.chr1_KI270765v1_alt 129075 334 + 185285 AATTTGGAATATAAA-GAGAAAAGAGAAAAATAGAAAGCTATGCATAAACACGTGCATTAAAATGAATTTTATGTG-----------GGCTTTTTCATGAAAATGTTCCTAAGGTATTTTAtttttttattgtggtaaaatacacataacataaaatgtactctgttaaccattttaagtgtacagttcagtggtactaaatatagtca------------taacattgtccagccgtccctaccatccatctccataattcgtttcatcttgtaaaactgaaactctatacccattaaacaatacttccccatttcctcctccccccagcttctggcaaccatcatcgtaccatctc s panTro4.chr1_GL389091_random 151257 334 + 179278 AATTTGGAATATAAA-TAGAAAATAGAAAAACAGAAAGCTATGCATAAACACGTGCATTAAAATGAATTTTATGTG-----------GGCTTTTTCATGAAAATGTTCCTAAGGTATTTTAtttttttattgtggtaaaatacacataacataaaatgtactctgttaaccattttaagtgtacagttcagtggtactaaatatagtca------------taacattgtgcagccgtccctaccatccatctccataagtcgtttcatcttgtaaaactgaaactctgtacccattaaacaacacttccccatttcttcctccccccagcttctggcaaccatcaatgtaccatctc i panTro4.chr1_GL389091_random C 0 C 0 s rheMac3.chr3 73803051 330 + 198365852 AATTTGGAATATAAATTAGAAAAGAGAAAAATAGAAAGCTATGCATAAACATATGCATTAAAATGAATTTTATGTG-----------AACTCTTTCATGAAAATGTTCCTAAGGTATTTTAtttttttattgtcgtaaaatac-----acataaaatgtactctgtttaccattttaagtatatagttcagtggtactaaatatagtca------------taacattgtgcagccatccctaccatccatctccataacttgtttcatattgtaaaactgaaactctgtacccattaaacaatatttcctcatttcttcctccccccagcttctggcaaccatcattgtactgtctc i rheMac3.chr3 n 15233 C 0 s macFas5.chr3 67280217 330 + 192294377 AATTTGGAATATAAATTAGAAAAGAGAAAAATAGAAAGCTATGCATAAACATATGCATTAAAATGAATTTTATGTG-----------AACTCTTTCATGAAAATGTTCCTAAGGTATTTTAtttttttattgtcgtaaaatac-----acataaaatgtactctgtttaccattttaagtatatagttcagtggtactaaatatagtca------------taacattgtgcagccatccctaccatccatccccataacttgtttcatattgtaaaactgaaactctgtacccattaaacaatatttcctcatttcttcctccccccagcttctggcaaccatcattgtactgtctc i macFas5.chr3 n 15361 n 15361 s chlSab2.chr21 5690602 330 + 127223203 AATTTGGAATATAAATTAGAAAAGAGAAAAATAGAAAGCTATGCATAAACATATGCATTAAAATGAATTTTATGTG-----------AACTCTTTCATGAAAATGTTCCTAAGGTGTTTTAtttttttattgtcataaaatgc-----acataaaatgtactctgtttaccattttaagtatatagttcagtggtactaaatatagtca------------taacattgtgcagccatccctaccatccatctccataactcgtttcatattgtaaaactgaaactctgtacccattaaacaatatttcctcatttcttcctccccccagcttctggcaaccatcattgtactgtctc i chlSab2.chr21 n 13535 n 13535 s calJac3.chr8 108093474 349 - 128169293 AATTTGGAAGATAAA-TATAAAAGAGAAAAATAGAAATTTATGCATAAACATAAGCATTAAAATAAATTTTATGTGGTCAGTCCTGTGTCTCTTTGGTGAAAATGTTTCTAAGGTGTTTTA-ttttttattgtggtaaaatacacataacataaaatgta--ctgttaatcatttt-agtgtacagttcagaggtactaaatataataacgagttatatattaatgatggctaagtatatatac---ccatctctataactcgtttcatcttgtaaaaccgaaactctgtactcattaaacaatagttccccatttcttcctttcctcagc-tctggcctccatcattttactacctc i calJac3.chr8 n 13513 n 13513 e ponAbe2.chrUn 5688366 5219 + 72422247 I e canFam3.chr18 4085246 14651 + 55844845 I e papAnu2.chr3 122263169 13448 - 180432695 I e nomLeu3.chr17 44126378 11875 - 99891981 I a score=18680.000000 s hg38.chr1_KI270765v1_alt 129409 6 + 185285 tataaT s panTro4.chr1_GL389091_random 151591 6 + 179278 tataaT i panTro4.chr1_GL389091_random C 0 C 0 s nomLeu3.chr17 44138253 6 - 99891981 TATAAT i nomLeu3.chr17 I 11875 C 0 s rheMac3.chr3 73803381 6 + 198365852 tacaat i rheMac3.chr3 C 0 n 0 s macFas5.chr3 125014164 6 - 192294377 TATAAT i macFas5.chr3 I 15361 C 0 s papAnu2.chr3 122276617 6 - 180432695 TATAAT i papAnu2.chr3 I 13448 C 0 s chlSab2.chr21 121532605 6 - 127223203 TATAAT i chlSab2.chr21 I 13535 C 0 s calJac3.chr8 20075823 6 + 128169293 TATAAT i calJac3.chr8 I 13513 C 0 s canFam3.chr18 4099897 6 + 55844845 TATAAT i canFam3.chr18 I 14651 C 0 e ponAbe2.chrUn 5688366 5219 + 72422247 I a score=188214.000000 s hg38.chr1_KI270765v1_alt 129415 101 + 185285 GCTAATCAAGCATAGTGGCTGTGTTTCTTGCTTCCTCTAGTCCGCAGGCAGCATACAAATGTAATAAACTACTT----ATTCATGTCGCATCTATTTATTTTCTG s panTro4.chr1_GL389091_random 151597 101 + 179278 GCTAATGAAGCATAGTGGCTGTGTTTCTTGCTTCCTCTAGTCCGCAGGTAGCATATAAATGTAATAATCTACTT----ATTCATGTCACATCTATTTATTTTCTG i panTro4.chr1_GL389091_random C 0 C 0 s nomLeu3.chr17 44138259 99 - 99891981 GCTAATCAAGCACAGTGGC--TGTTTCTTGCTTCCTCTAGTCTGCAGGTAGCATACAAACGTAATAAACTATTT----ATTAATGTTACATCTATTTATTTTCTG i nomLeu3.chr17 C 0 C 0 s macFas5.chr3 125014170 92 - 192294377 GCTAATCAAGCAGAGTGGCTATGTTTCTTGCTTCCTCTAGTCTGCAGGTAGCATAGAAATGTAATAAAC----T----ATTAACGTTACATCTATTTATT----- i macFas5.chr3 C 0 C 0 s papAnu2.chr3 122276623 101 - 180432695 GCTAATCAAGCAGAGTGGCTATGTTTCTTGCTTCCTCTAGTCTGCAGGTAGCATAGAAATGTAATAAACTATTT----ATTAACGTtacatctatttattttctt i papAnu2.chr3 C 0 C 0 s chlSab2.chr21 121532611 101 - 127223203 GCTAATCAAGCAGAGTGGCTATGTTTCTTGCTTCCTCTAGTCTGCAGGTAGCATAGAAATGTAATAAACTATTT----ATTAACGTTACATCTATTTATTTTCTC i chlSab2.chr21 C 0 C 0 s calJac3.chr8 20075829 101 + 128169293 GCTAATCAAGCGGAGTGGCTGTATTTCTTGCTTCCTCTAGTTTGCAGGTAGCGAACAAATGTAATAAACTATTT----ATTAATGTTACATCTATTTATTTTCTG i calJac3.chr8 C 0 C 0 s canFam3.chr18 4099903 103 + 55844845 CCCAGTAAAGCACAGTGGCTGTGTATCTGGCTTCATCC--TCAGTAGATACTGTGCAAATGTAATACACTATTTATTAATTAATATTACATCTATCTATTTCCTG i canFam3.chr18 C 0 C 0 e rheMac3.chr3 73803387 0 + 198365852 I e ponAbe2.chrUn 5688366 5219 + 72422247 I a score=2743023.000000 s hg38.chr1_KI270765v1_alt 129516 1064 + 185285 CCTTATACCAAGCTTGTGGGTTTCTCTTAAATACAACATTTTTATACT-----TACACCTATGCAATACCCATTAGCATCGCCTTCCTAAATCAGGGGAAATTGAGCTTCTGTCAGGTGGAGTAACTTCCTAAGATATAAAACTCAGCATTGAAGTCTGTATACTTCAATATCCTGCCCTCTTCTCATGTGTCTTTACTGCCTTTTATGTATGTGTTAGATGTTCAACAAATTCTCTTT-TTT-AAACTGAATTTAAGCCGTGGAGCAGTGTTTTGTTGAACAATAAATATGATATAGGACACTCTTCCTCCTTTTCATGTATGATCCTGTTCATGAAAAAGAGAAATTCTTTCATTGTGCTAGAAGCTTAAAATAATGAAAATGCCACTTTCTACATTAAACAGAAACTGAAGGGAATCAAGGTGAATTGCATGAGACATAGAAAACAAGTGG----GAAAGAAATCTAGTATAATTTGCCCTTTGTGTACCTTTATTATTTAGCGTTTGAGTAAATGATTCCCCCAAATATCTTC-------CCATCTCAATTCATGTCTATAAAGTAGACGTTTATGTCTCACCTTGTCAAGAAGAGCAAAGTCTAACATAAACATTTCCCAAAAATGCTTCCTGCTAAAACGTAAGCTCAGTCTGGCTAGAAATGCAGCTCACTTCCTAAAGATTAATTGGTAGCTAAT-TTTGCATGCTGTTCTCTGAACTTGAGTGTAACCTGTCCGTCAGGCATACAGGGAATGACGGGAAAGGTGACAACAGAAGATGAATGCTATGTCACTAACCTTCAAAGATGACCTGCCTTTTCTTTCAAATTCTTGATATCTTAAGACTTCATTAATTCATCTCTCTTTTCCCTTGGTTCAACATTTTGCTATACCAAAAC-TCATGTGAGACAATGACCTAATGTAATAAAAATGGCATTTTTCTTTCATGTAGTTGCAAGCT-AACTGGCATTTTTACAATCCACATATTTCCTTTGTCAG--TTTTTCATTCTGTATTGGAAGTAATT----------------------------------------------GATGGGTATTTCTGAAGGGATGAAGGTGTTTCTGTGTTCATTGTGATCCAAAC s panTro4.chr1_GL389091_random 151698 1065 + 179278 CCTTATACCAAGCTTGTGGGATTCTCTTAAATACAACATTTTTATACT-----TACACCTATGCAATACCCATTAGCATCGCCTTCCTAAATCAGGGGAAATTGAGCCTCTGTCAGGTGGAGTAACTTCCTAAGATATATAACTCAGCATTGAAGTCTGTATACTTCAATATCCTGCAATCTTCTCATGTGTCTTTACTGCCTTTTATGTATGTGTTAGATGTTCAATAAATTCTCTTT-TTTTAAACTGAATTTAAGCCGTGGAGCAGTGTTTTGTTGAACAATAAATATGATATAGGACACTCTTCCTCCTTTTCATGTATGATCCTGTTCATGAAAAAGAGAAATTCTTTCATTGTGCTAGAAGCTTAAAATAATGAAAATGCCACTTTCTACATTAAACAGAAACTGAAGGGAATCAAGGTGAATTGCATGAGACATAGAAAACAAGTGG----GAAAGAAATCTAGTATAATTTGCCCTTTGTGTACCTTTATTATTTAGCGTTTGAGTAAATGATTCCCCCAAATATCTTC-------CCATCTTAATTCATGTCTATAAAGTAGACATTTATGTCTCACCTTGTCAAGAAGGGCAAACTCTAACATAAACATTTCCCAAAAATGCTTCCTGCTAAAACGTAAGCTCAGTCTGGCTAAAAATGCAGCTCACTTCATAAAGATTAATTGGTAGCTAAT-TTTGCATGCTGTTCTCTGAACTTGAGTGAAACCTGTCCATCAGGCATACAGGGAATGACGGGAAAGGTGACAACAGAAGATGAATGCTATGTCACTAACCTTCAAAGATGACCTGCCTTTTCTTTCAAATTCTTGATATCTTAAGACTTCATTAATTCATCTCTGTTTTCCCTTGGTTCAACATTTTGCTATACCAAAAC-TCATGTGAAACAATGACCTAATGTAATAAAAATGGCATTTTTCTCTCATGTAGTTGCAAGCT-AACTGGCATTTTTACAATCCACATATTTCCTTTGTCAA--TTTTTCATTCTGTATTGGAAGTAATT----------------------------------------------GATGGGAATTTCTGAAGGGATGAAGGTTTTTCTGTGTTCATTGTGATCCAAAC i panTro4.chr1_GL389091_random C 0 C 0 s nomLeu3.chr17 44138358 1065 - 99891981 CCTTATACCAAGCTTGTGGGGTTATCTTAAATATAACATTTTTATACT-----TACACCTATGCAATACCCATTAGCATTGCCTTCCTAAATCAGAGGAAATTGAGCCTCTGTAAGGTGGAGTATCTTAGTAAGATACAGAACTCAGCATTAAAGTCTGTATACTTCAATATCCTGCCCTCTTTCCATTTGTCTTTACTGCCTTTTATGTATGTGTTAGATGTTCAATAAATTCTCTTT-TTT-AAACTGAATTTAAGCCGTGGAGCAGTGTTTTGTTTAACAATAAATATGATATAGGACACTCTTCCTACCTTTCATTTATGATCCAGTTCATGAAAAAGAGAAATTCTTTCATTGTGTTAGAAGCTTAAAATAATGAAAATACTACTTTCTACATTAAACAGAAACTGAAAGGAATCAAGGTGAATTGCAAGAGACATAGAAAACAAGTGG----GAAAGAAATCTAATACAATTTGCCCTTTGTATACCTTTATTATTTAGTGTTTGAGTAAATG-TTTCCCCAAATATCTTC-------CCATCTTAATTCATGTCTATAAAATAGACATTTATGTCTCACCTTGTCAAGAAGGGCAAACTCTAACATAAACATTTCCTAAAAATACTTTCTGCTAAAACATAAGCTCAGTCTGTCTAGAAATTAAGTTCCCTTCATAAAGATTAATTGGTAGCTAATCTTTGCATGCTCTTCTCTGAACCTGAGTGAAAGCTGTCCATCAGGCATACAGGGAATGACGGAAAAGGTGACAACAGAAGATGAATGCTATGTCACTAACCTTCAAATATGACCTTCCTTTTCTTTTAAATTCTTGATATATTAAGACTTAATTAATTCATCTCTCTTTGCCCTTGGTTCAACGTTGTGCTATACCAAAAC-TCATGTAAAACAATGATCTAAGGTAACAAAAATGGCATTTTTCTTTCACGTAGATGCAAGCTAAACTGGCATTTTTACAATCAACATAGTTTCTTTATCAA--TTTTTCATTCTGTATTGGAAGTAATT----------------------------------------------GATAGGTATTTCTGAAGGGAAGAAAGTGTGTCTGTGTTCACTGTGATCCAAAC i nomLeu3.chr17 C 0 C 0 s rheMac3.chr3 124562903 1059 - 198365852 CCTTATATGAAGCTTGTGGGGTTATCTTAAATATAACATTTTTATACT-----TACAGCTATGCAATACCCATTAGCATCGCCTTCCTAAATCAGAGGGAATTGAGCCTCTGTAAGGTGGAGTGAGTAACT----TACAGAACTCAGCATTAAAGTCTGTATACTTCAATATCCTGCCCTCTTTTCATTTGTCTTTACTGCCTTTTATGTATGTGTTAGACGTTCAATAAATTCTCCTT-TTC-AAACTGAATTTAAGCCGTGGAGCAGTGTTTTGTTGAACAATAAATATGATATAGGACACTCTTCCTACCTTTCATTTATGATTCAGTTCATGAAAAAGAGAAATTCTTTCATTGTCCTAGAAGCTTAAAATAATGAAAATACCACTTTCTCCATTAAACAGAAACTGAAGGGAATCAAGGTGAATTGCACGAGATACAGAAAACAAATGG----GAAAGAAATCTAATATAACTTGCCCTTTGTGTACCTTTATTATTTAGCGTTTGAGTAAATATTTCCCCCACATATCTTC-------CCATCTTAATTCATGTCTATAAAGTAGACATTTATGTCTCACCTTGTCAAGAAGGGCAAACTCTAACATAAACATTTCCTAAAAATGCTTCCTGCTAAAACGTAAGCTCAGTCTGGCTAGAAATTAAGTTCCCTTCATAAAGATTAATTGGTAGCTAATCTTTGCAAGCTGTTCTCTGAACTTGAGTGAAAGCTGTCCATCAGGCATACAGGGAATGACGGAAAAGGTGACAACAGAAGATGAATGCTATGTCACTAAACTTCAAAGATGACCTTCCTTTTCTTTTAAATTCTTGATATCGTAAGACTTAATTAATTCATCTGTCTTTACCCTTGGTTCAACGTTGTTCTATACCAAAAC-TCATGTAAAACAATGATCTAATGTAATAAAAATGGCA-TTTTCTTTCATGTAGATGCAAGCT-AACTGACATTTTTACAATCAACATATTTCCTTTGTCAG---TTTTCATTCTGTATTGGAAGTAATT----------------------------------------------GATAGGTATTTCTGAAAGGATGAGGGTGTGTCTGTGTTCATTGTGATCCAAAC i rheMac3.chr3 I 15233 I 1 s macFas5.chr3 125014262 1059 - 192294377 CCTTATATGAAGCTTGTGGGGTTATCTTAAATATAACATTTTTATACT-----TACAGCTATGCAATACCCATTAGCATCGCCTTCCTAAATCAGAGGGAATTGAGCCTCTGTAAGGTGGAGTGAGTAACT----TACAGAACTCAGCATTAAAGTCTGTATACTTCAATATCCTGCCCTCTTTTCATTTGTCTTTACTGCCTTTTATGTATGTGTTAGACGTTCAATAAATTCTCCTT-TTC-AAACTGAATTTAAGCCGTGGAGCAGTGTTTTGTTGAACAATAAATATGATATAGGACACTCTTCCTACCTTTCATTTATGATTCAGTTCATGAAAAAGAGAAATTCTTTCATTGTCCTAGAAGCTTAAAATAATGAAAATACCACTTTCTCCATTAAACAGAAACTGAAGGGAATCAAGGTGAATTGCACGAGATACAGAAAACAAATGG----GAAAGAAATCTAATATAATTTGCCCTTTGTGTACCTTTATTATTTAGCGTTTGAGTAAATATTTCCCCCACATATCTTC-------CCATCTTAATTCATGTCTATAAAGTAGACATTTATGTCTCACCTTGTCAAGAAGGGCAAACTCTAACATAAACATTTCCTAAAAATGCTTCCTGCTAAAACGTAAGCTCAGTCTGGCTAGAAATTAAGTTCCCTTCATAAAGATTAATTGGTAGCTAATCTTTGCAAGCTGTTCTCTGAACTTGAGTGAAAGCTGTCCATCAGGCATACAGGGAATGACGGAAAAGGTGACAACAGAAGATGAATGCTATGTCACTAAACTTCAAAGATGACCTTCCTTTTCTTTTAAATTCTTGATATCGTAAGACTTAATTAATTCATCTGTCTTTACCCTTGGTTCAACGTTGTTCTATACCAAAAC-TCATGTAAAACAATGATCTAATGTAATAAAAATGGCA-TTTTCTTTCATGTAGATGCAAGCT-AACTGAcatttttacaatcaacatatttcctttgtcag---ttttcattCTGTATTGGAAGTAATT----------------------------------------------GATAGGTATTTCTGAAAGGATGAGGGTGTGTCTGTGTTCATTGTGATCCAAAC i macFas5.chr3 C 0 I 1 s papAnu2.chr3 122276724 1059 - 180432695 ccttatatgAAGCTTGTGGGGTTATCTTAACTATAACATTTTTATACT-----TACAGCTATGCAATACCCATTAGCATCGCCTTCCTAAATCAGAGGGAATTGAGCCTCTGTAAGGTGGAGTAACTTACT----TACAGAACTCAGCATTAAAGTCTGTGTACTTCAATATCCTGCCctcttttcatttgtctttacTGCCTTTTATGTATGTGTTAGACGTTcaataaattctcttt-ttc-aAACTGAATTTAAGCCGTGGAGCAGTGTTTTGTTGAACAATAAATATGATATAGGACACTCTTCCTACCTTTCATTTATGATTCAGTtcatgaaaaagagaaattcttTCATTGTCCTAGAagcttaaaataatgaaaataccatTTTCTCCATTAAACAGACACTGAAGGGAATCAAGGTGAATTGCACGAGATACAGAAAACAAATGG----GAAAGAAATCTAATATAATTTGCCCTTTGTGTACCTTTATTATTTAGCGTTTGAGTAAATATTTCCCCCAAATATCTTC-------CCATCTTAATTCATGTCTATAAAGTAGACATTTATGTCTCACCTTGTCAAGAAGGGCAAACTCTAACATAAACATTTCCTAAAAATGCTTCCTGCTAAAACGTAAGCTCAGTCTGGCTAGAAATTAAGTTCCCTTCATAAAGATTAATTGGTAGCTAATCTTTGCAAGCTGTTCTCTGAACTTGAGTGAAAGCTGTCCATCAGGCATACAGGGAATGACGGAAAAGGTGACAACAGAAGATGAATGCTATGTCACTAAACTTTAAAGAtgaccttccttttcttttaaatttttagtatcaTAAGACTTAATTAATTCATCTGTCTTTACCCTTGGTTCAACATTGTTCTATACCAAAAC-TCATGTAAAACAATGAtctaatgtaataaaaatgtca-ttttctttcatgCAGATGCAAGCT-AACTGACATTTTTACAATcaacatatttcctttgtcag---tttTCATTCTGTATTGGAAGTAATT----------------------------------------------GATAGGTATTTCTGAAAGGATGAGGGTGTGTCTGTGCCCATTGTGATCCAAAC i papAnu2.chr3 C 0 I 1 s chlSab2.chr21 121532712 1105 - 127223203 CCTTATATGAAGCTTGTGGGGTTATCTTAAATATAACATTTTTATACT-----TACAGCTATGCAATACCCATTAGCATCGCCTTCCTAAATCAGAGGGAATTGAGTCTCTGTAAGGTGGAGTAACTTACT----TACAGAACTCAGCATTAAAGTCTGTATACTTCAATATCCTGCCCTCTTTTCATTTGTCTTTACTGCCTTTTATGTATGTGTTAGACTTTCAATAAATTCTCTTT-TTC-AAACTGAATTTAAGCCGTGGAGCAGTGTTTTGTTGAACAATAAATATGATATAGGACACTCTTCCTACCTTTCATTTATGATTCAGTTCATGAAAAAGAGAAATTCTTTCATTGTCCTAGAAGCTTAAAATAATGAAAATACCACTTTCTCCATTAAACAGAAACTGAAGGGAATCAAGGTGAATTGCACGAGATACAGAAAACAAATGG----GAAAGAAATCTAATATAATTTGCCCTTTGTGTACCTTTATTATTTAGCGTTTGAGTAAATATTTCCCCCAAATATCTTC-------CCATCTTAATTCATGTCTATAAAGTAGACATTTATGTCTCACCTTGTCAAGAAGGGCAAACTGTAACATAAACATTTCCTAAAAATGCTTCCTGCTAAAATGTAAGCTCAGTCTGGTTAGAAATTAAGTTCCATTCATAAAGATTAATTGGTAGCTAATCTTTGCAAGCTGTTCTCTGAACTTGAGTGAAAGCTGTCCATCAGGCATACAGGGAATGATGGAAAAGGTGACAACAGAAGATGAATGCTATGTCACTAAACTTTAAAGATGACCTTCCTTTTCTTTTAAATTCTTGATATCGTAAGACTTAATTAATTCATCTGTCTTTACCCTTGGTTCAACGTTGTTCTATACCAAAAC-TCATGTAAAACAATGATCTAATGTAATAAAAATAGCA-TTTTCTTTCGTGTAGATGCAAGCT-AACTGACATTTTTACAATCAACGTATTTCCTTTGTCAG---TTTTCATTCTGTATTGGAAGTAATTGATAGGTATTTCTGAAAGGATGAGATAGGTATTTATGAAAGGATGAGATAGGTATTTCTGAAAGGATGAGGGTGTGTCTGTGTTCATTGTGATCCAAAC i chlSab2.chr21 C 0 I 27 s calJac3.chr8 20075930 1052 + 128169293 CCTTGTACAGAGCTTGCAGGGTTATCTTAACTATAACATTTTTATACT-----TATACCTTTGCAGT-CCCCTTAGCATCGCCTTCCTGAATCAGAGGAAATCCAGCCTCTGTAAGGTGGAGTAACTGACTGTGATACAGAACTCCACACTAAAGTCTGTATACTTCAATATCCTGCCCTCTTTTCATTTGTCTTTACTGCCTTTCATGTGTGTGTTTAATGTTCAATACATTCTTTTT-TTA-AAAATGAATTTAAGCCATGGAGTGGTGTTTTGTTGAACAATAAATATGATATAGGAAACTCTTCCAACCTTTCATTTATGATCCAGTTCATAAAACAAAGAAATTCTTTTATTGTGCTAGAAGCTTAAAATAATGAAAATGCCACTTTCTACATTAAACGGAAACTGAAGGGAATCAAGGTGAATTGCCTGAGCTATAGAAAACGAGTGG----GAAAGAAGTCGAATATAATTTGCCCTTTGTGTACCTTTATTATTTAGCTTTTGAGTAAATATTTCCCACAAATATCTTC-------CCATCTTAATTCATGTCTATAAAGTAGACATTTATGTCTCACCTTGTCAAGAAGGGCAAACTCTACAATAAATTTTTCCTAAAAATGCTTCCTGCAGAAACGAAAGCTGAGTCATGCTAGAAATTAAGTTCCCTTCATAAAGATTAATTGGTAGCTAATCTTTGCATGCTATTCTCTGAACTTGAGTGAGAGCTGTCCATAAGGCATACAGGGAATGATGGAAAAGATGACAAAAGAAGATGAATGCTATGTCACTAACCTTCAGAGATGACCTCCCTTTACTTTTCAATTCCTGATATGTTAAGACTTAATTATTTCATCTCTCTCTGCCCTTGGTTCAAAGTTATGCTATACCAAAAC-TCATGTAAAATAATTATCTACTATAATAAAAATGGCA-TTT----------AGATGCAAGCT-AACTGGCATTATTACAATCAACATCGTTCTTTTGTCAG--TTTTTCATGTTGTATTGGATGTAATT----------------------------------------------GATAGGTATTTATAAAGGGATGTAGGTGTATCTGCATCCATTGTGATCCAAA- i calJac3.chr8 C 0 C 0 s canFam3.chr18 4100006 1041 + 55844845 GCTTTTACTAATCTT-TGTAGTTATCTTAA-TATCAAA-TTTTATATTTATAATACACCTGTATAAC-CCCATTAGCATCCCCATCTTACTTTGAAGGAATTTTAGCCTCCACAGGGCAAAGTAACTTAGA--GAGAGAGAACTCAGCATTAAATTCTATATAACTCAAGATCCTCCCTTCTTTCCATTT-TCTTTATTGCCTGTAGTGTATGTGCTATATGTTCAATAAATTCTCTTTCTTT-AAATTGAATTTAACCTGAGAAGCAATGTTTTGTTGAGCAATAAATATGATATAAGACACTCTTCCTACTTTTCAGTTATGATACAGTTCATGG---GGAAAAATTATTTCATTATGCTGGAAACTTAAAATAATGAACATGATACTTTCCATGTTAACTAAAAACTGAAGAAAATCAAGTTGAATTACATAAGGTAAAACAAGCAAGTGGAAAAGGAAGGAATTGAATATAACATGTCCTTTGCACTCC-TTATT-TTTAGCTTTCGAATAAATGTTTT---------TCTTCCAGTGGACTACCTTAATCCATGTCCGAAATATATACTTCTGTGTCTTCTCTATTTAAGACATGTTCACTCTAATACAAACATTTCCT-AAAATGAATCTTTCAAATGGATGAACTGAGTCTACTTAG-AATGAAGTCCCCTCCATAATGCTTAATTGATAGCTAGTCATTATA---TGTTCTGTGAGCTTGAGTGACAGCTG-----------TACATGGAATGATGGAAAATGTGACAACAGATGATAAATGCTACATCAATAACCTTCAAAGTTGACCTTCCTTCTCTTTTAAATTTCTCATATTTTAGGATTTAATTTCTTCATCTCTCTTTGCTTTTGTTCCAAAATTATGATGTACTAAAACATCATGCAACACAATTATAGACTGTAAAAAAA--GACATTTTTCTTTCACATAGAATCAAGCT-AACTGGATTTTCAATAGCCCATATA-TTCCTTTGTAAGTTTTTTTCATTTTCAATTGGAAATCTTT----------------------------------------------AATA-ATATTTCTGAAGGGATACAGATATGCCTGTGCTCATTATGA---AAAC i canFam3.chr18 C 0 C 0 e ponAbe2.chrUn 5688366 5219 + 72422247 I a score=29353.000000 s hg38.chr1_KI270765v1_alt 130580 25 + 185285 TATTTCTAGACCTAGGGGCCTTTGT s panTro4.chr1_GL389091_random 152763 25 + 179278 TATTTTTAGACCTAGGGGCGTTTGT i panTro4.chr1_GL389091_random C 0 C 0 s nomLeu3.chr17 44139423 25 - 99891981 TTTTGTTAGACCTAGTGGTGTTTGT i nomLeu3.chr17 C 0 C 0 s rheMac3.chr3 124563963 25 - 198365852 TTTTTTTAGACCTAGTGGTGTTTTT i rheMac3.chr3 I 1 I 1 s macFas5.chr3 125015322 25 - 192294377 TTTTTTTAGACCTAGTGGTGTTTTT i macFas5.chr3 I 1 I 1 s papAnu2.chr3 122277784 25 - 180432695 tttttttAGACCTAGtggtgttttt i papAnu2.chr3 I 1 I 1 s calJac3.chr8 20076982 24 + 128169293 -ATTTTTGGACCTAGTGATGTTTTT i calJac3.chr8 C 0 I 1 s canFam3.chr18 4101047 9 + 55844845 AATTCCTGA---------------- i canFam3.chr18 C 0 C 0 e chlSab2.chr21 121533817 27 - 127223203 I e ponAbe2.chrUn 5688366 5219 + 72422247 I a score=250261.000000 s hg38.chr1_KI270765v1_alt 130605 102 + 185285 AAA-CAATTTGTGCCCACTGACCAAAGATCACTGTGGCAGAAAGCAGCAAACTTGCATAAGATGTCACTGCTTCATAGGTTGGCTTTGAAAACTAGGGGCTTA s panTro4.chr1_GL389091_random 152788 103 + 179278 AAAACAATTTGTGCCCACTGACCAAGGATCACTGTGGCAGAAAGCAGCAAACTTGCATAAAATGTCACTGCTTCATAGGTTGGCTTTGAAAACTAGGGGCTTA i panTro4.chr1_GL389091_random C 0 C 0 s nomLeu3.chr17 44139448 103 - 99891981 AAAACAATTTGTGCCAGCTGACCAAGGACCACTGTGGCAGAAAGCAGCAAACTTGCATAAGGTGTCACTGCCTCATAAGTTGGCTTTGAAAACTAGGGGCTTA i nomLeu3.chr17 C 0 C 0 s rheMac3.chr3 124563989 95 - 198365852 -AAACAATTTG-------TGACCAAGGACCACTGTGCCAGAAAGCAGCAAACTTGCATAAGATGTCACTGCCTCACAAGCTGGCTTCGAAAACTAGGGGCTTA i rheMac3.chr3 I 1 C 0 s macFas5.chr3 125015348 95 - 192294377 -AAACAATTTG-------TGACCAAGGACCACTGTGCCAGAAAGCAGCAAACTTGCATAAGATGTCACTGCCTCACAAGCTGGCTTCGAAAACTAGGGGCTTA i macFas5.chr3 I 1 C 0 s papAnu2.chr3 122277810 102 - 180432695 -aaacaatttgtgcCAGCTGACCAAGGACCACTGTGCCAGAAAGCAGCAAACTTGCATAAGATGTCACTGCCTCACAAGCTGGCTTTGAAAACTAGGGGCTTA i papAnu2.chr3 I 1 C 0 s chlSab2.chr21 121533844 102 - 127223203 -AAACAATTTGTGCCAGCTGACCAAGGACCACTGTGCCAGAAAGCAGCAAACTTGCGTAAGATGTCACTGCCTCACAAGCTGGCTTTGAAAACTAAGGGCTTA i chlSab2.chr21 I 27 C 0 s calJac3.chr8 20077007 101 + 128169293 -AAATAATTTGTGCCAGCTGACCAAGGACCACTGTGCCAGAAAGCAGC-AACTTGCATGAGATGTCACTGTCTCATAAGATGGCTTTGAAAACTAGAGGTCTA i calJac3.chr8 I 1 C 0 s canFam3.chr18 4101056 83 + 55844845 -AAACAATCTGT-------------------CCATGCTAGAAAACAGTAAGCCTACATAAGGTGCTGCTGTCTTATAAATTGACTTTGAAAATTATAGGCTTA i canFam3.chr18 C 0 I 1236 e ponAbe2.chrUn 5688366 5219 + 72422247 I a score=7552337.000000 s hg38.chr1_KI270765v1_alt 130707 3483 + 185285 CTCTATACTCTTATGAATAAAAGACATTGATAGatgtagtataagattacaatcatattttccttttgacagtcacattataaatcaagatgtattgcaattaatctcaattagctgatcacaattaaaattaataatgtttattattgctgataaa-aatcatgtctctcctgttctcaaatgtgcaagtaattcttgtaattttaatacaaatttgcatattattattaattgatttaatctcattggatttggttcatggatccaatttattaaaatATTGATAATGGGATAATGAGTtgtctccccatttcatgtacactaaaaacaacatttcttacaatggtctgcaagcccatcatcatctgcctcatgttaaccgccaaaattcttttatatcttcacccttgatcttaccagtggtcctggccacctcactgtcctctggacataccaacatgctgctgccttacgatcaagactctagttaattttttggcttggaaagatagccctccatatatccattgatcagctcattcaacttcctcaggtctttactgaaacttcacattctcgatgaggcctattcagtatttcaaactgcatcccagctgcaacattccaaaaccccttactcttctGTGTAtttttgaaaggatttattgagatataatttacatagtgtagagtgcacacattaatgtctacaagtcagtggcttttagtatatgcacagataagtggagccaccatcacaatgaattttagagcattttcatcacttcaaaaagaaaccccaccttccctagctgttaacctcctatgcacccatcccctactcaatcctaagcaaccacaaatctgttttctg-tctctatagattttcctattc----tgttttcatctaaatagaatcgtacaataggtggccttttctgcccg-g-----cttcgttcagttggcataatgctatcaaggttcatgtacgtattggtactttatttctttttataactctataacattcaatttcatggatataacattttgtttatccaatagtatttttattgacatttgagttgtgttcagcctttggctattttaggtactgctgctaaaaatacttgtgtacaatttgtgtttgaacacctctttccaataatctgggtgtatacctaggaataaatttctgggtcatatgacaattctatgtttcatat-atttagaagccatcaaattattttccaaagtggccagttctagccatagagtatctaactgtggttttgatttgtagttgcctgaagagtgatgctgttgagta-tatttttatgtgattattgaccgttcatgtatcttcttgggaaacacatctattcctatcatttatcagttttgagttgggata----tttgtgacggagttaaaccaatttttctatattcaagatacatatatatataca----gacatatagatacgtgtttttcaaatatcttctcacaattttggagctgccttttgacttgcttggt-tgtcctctgaaacaccgatgtctttaatttttaagaaattttaaatatctaatttttattctgttgctcatgtttttggggttacagctatttctttgctagatccaaaatcctgaagattttcccatatgctttattctacctcttgcatgtgtgtctttaattcatttgagttaata-tttttgtatgctttggggtaagggttctaatttattattttgcaagtggtgatccacgtgtacgttgttgaccc--agtgtgttcaaagactgtctcttcctcattgaattgcacatggcaccactttaagaatccattgactgtagacacatagttttatatatggactctcaattctcttccatcaatctatatatttttccttcatcaatattgtgttgtcttgattactgatactt-tgcagtaaggtttggagcatgggg-tgtgaattatcctaatatgttttctttcttcaagattattttggctattttgagtcccttacaatttcatgtgtattttagaatcagcttgtcagtttctagacacaagtctgttgggatacttgcagggatttcatcaaatctgtagttcaaattgtaaagtactacaatatcaaatcgtccaa--ttcatgggtgtaaggtgtttactaattatttaaatattctttaaacaataatttttaattttcagagt-aaaatcttgtatcacattt-tccaaattaatt----aatatttctt---ttttt--atgctattttaaattgaagtgttttcttaaattcattttggggttttcattgaagatgtgtgtaattgatttttgtacatttaccttgtctgctgtaatattgctgaaataatttacgagttctatc----gttcggtggattccttaaaattttctatatacaacaat--gttattttcaaataaagttttatttcttcctgttcattatgggtgactcttattattttagttgccgatttgccctgcataaaatctttagtacagtgttgactagaagaggtcaaag--tatatatcctattcttatctctgaccatagcgggaaagcatccttt-----accattaagttgcctgcttgctgttggcttttcacaggtgccatgtatctggtgtagaaagttc---tctattcctggttcattgag------tttttatttt----tatttttaatcattaaagcttttggattctgttaaatgtgttttccgaatctatcgagatgatcatg-aattctcttttcttattctatggataagatgtattaccttaatggattttgggctgttaaaccaacctgggattacttgtataaatttcactttgtcatagtgtataattcttttatatgttgctagatctgatttgttagtattttttaaggaattttgcatttatact------------tatagtag-ttttatttttctatgctatttggactaatttttgtatcaaagtaacactggccccacagaataaattggaaagtgaatatttctc-ttttttaaaaaagctagtcaagaattaatatcaattattcAACACTAACAA---ATATTAT---TATTATAAAttattaatttctctaattttaattttcttccttctgcttgctttaggtttagtttgctattcgttccagtgccttaatgtggaacgtcatcttatCTCATCCTTTCCTTTGTCTTTTCATTTTGTAAATAGTGTCTTCTTAGCAtcaggtgagctccc-------caggttggtagtactccatgtttgttgctgtacaacaatgacaggtaatatgtcctgaagacaatggaaacttaaccttcaaaat-ctcctagattccac--cttatatgatatgtctcttct----attggtcctaatttctaccctttctctattataaaccatgagtacaatggcattcaatgagttctgtgagtctttctagtaaattcttgaaactgagggtgttcaggggaaatccctg s panTro4.chr1_GL389091_random 152891 3487 + 179278 CTCTATACTCTTATGAATAAAAGACATTGATAGATGTAGTATAAGACTACAGTCATATTTTCCTTTTGACAGTCACATTATAAAGCATGATGTATTGCAATTAATCTCAATTAGCTGATCACAATTACAATTAATAATGTTTATTattgctgataaa-aatcatgtctctcctgttctcaaatgtgcaagtaattcttgtaattttaatacaaatttgcatattattattaattgatttaatctcattggatttggttcatggatccaatttattaaaatattgataatgggataatgatttgtctccccatttcatgtacactagaaacaacatttcttacaatggtctgcaagcccatcatcatctgccgcatgttaaccgccaaaattattttatatctttacccttgatcttaccaatggtcctggccacctcactgtcctctagacatgccaacatgatgctgccttatgatcaagactctagttaatttcttggcttggaaagatagccctccatatatccattgatcagctcattcaacttcctcaagtctttactgaaacttcacattctcgatgaggcctattcagtatttcaaactgcctcccagctgcaacattccaaaaccccttactcttctGTGTAtttttgaaaggatttattgagatataatttacatagtgtagagggcacactttaatgtctacaagtcagtggcttttagcatatgcacagataagtggagccatcatcacaatgaattttagagcattttcatcacttcaaaaagaaaccccaccttctctagctgttaacctcctatgcacccatcccctactcaatcctaagcaaccacaaatctgttttctg-tctctatagattttcctattc----tattttcatctaaatagaatcatacaataggtggccttttgtgcctg-g-----cttctttcagttggcataatgctatcaaggttcatgtacgtattggtactttatttctttttataactgtataacattcaatttcatggatataacattttgtttatccaataatagttttattgacatttgagttgtgttcagactttggctattttaagtactgctgctaaaaatacttgtgtacaatttgtgtttgaacacctctttccaataatctgggtgtatacctaggaataaatttctgggtcatatgacaattctatgtttcatat-atttagaagccatcaaattattttccaaagtggcCAGTTGTAGCCATAGAgtatctaactgtggttttgatttgtagttgcctgatgagtgatgctattgagta-tatttttatgggattattgaccgttcgtgtatcttcttgggaaacacatctattcctatcatttatcagttttgagttgggata----tttgtgacggagttaaaacaatttttctatattcaagatacatatatatataca----gacatatagatacgtgtttttcaaatatcttctcacaatttttgagctgccttttgacttgcttggt-tgtcctttgaaacaccaatgtctttaatttttaagaaattttaaatatctagtttttattttgttgctcatgtttttggggttacagctatttctttgctagatccaaaatcctgaagattttcccatatgctttattctacctcttgcatgtgtgtctttaattcatttgagttaata-tttttgtatgctttggggtaagtgttcgaatttattattttgcaagtggtgatccacgtgtacgttgttgaccc--agtgtgttcaaagactgtctcttcctcattgaattgcacatggtaccactttaaaaatccattgactgtagacacatagttttatatatggactctcaattctcttccatcaatctgtatatttttccttcatcagtattgtgttgtcttgattactgatactt-tgcagtaaggtttggagcatgggggtgtgaattatcctaatatgttttctttcttcaagatgattttagctattttgagtcccttacaattccatgtgtattttagaaacagcttgtcagtttctagacagaagtctgttgggatacttgcagggatttcatcaaatctgtagttcaaattgtaaagtactacaatattaaatcgtccaa--ttcatgggtgtaaggtgtttgctaattatttaaatattctttaaacaataatttttaattttcagagt-aaaatcttgtatcacattt-tccaaattaatt----attatttctt---ttttttgatgctattttaaattgaagtgttttcttaaattcattttggggttttcattgcagatgtgtgcatttgatttttgtacatttaccttgtttgctgtaatattgctgaaataatttacgagttctatc----gttcggtggattccttaaaattttctatatacaacaat--gttattttcaaataaagttttatttcttcctgttcaatatgggtgactcttatttttttagttgccgatttgccctgcataaaatctttagtacagtgttgactagaagaggtcaaag--tatatatcctattcttatctctgaccatagtgggaaagcatccttt-----accattaagttgcatgcttgctgttggcttttcacaggtgccatgtatctggtgtagaaagttc---tctattcctagttcattgag------tttttatttt----tatttttaatcattaaaacctttggattttgttaaatgtcttttccgaatctatcgacatgatcatgcaattctcgtttcttattctatggataagatgtattaccttaatgaattttgggctgttaaaccaacctgggattacttgtataaatttcactttgtcatagtgtataattcttttatatgttgctagatctgatttgttagtattttttaaggaattttgcatttatact------------tatagtag-ttttatttttctatgctatttggactaatttttgtatcaaggtaacactggccccacagaataaattgggaagtgaatatttctc-tttgttcaaaaagctagtcaagaattaatatcaattattcAACACTAACAA---ATATTAT---TATTATAAAttattaatttctctaattttaattttcttccttctgcttgctttaggtttagtttgctattcgttccagtgccttaatatggaacgtcatcttatCTCATCCTTTCATTTGTCTTTTCATTTTGTAAATAGTGTCTTTTTAGCAtcaggtgagcttcc-------caggttggtagtactccatgtttgttgctgtacaacaatgacaggtaatatgtcctgaaggcaatggaaacttaacattcaaaat-ctcctagattccac--cttatatgatatgtcttttct----attggtcctaatttctaccctttctctattataaaccatgagtacaatggcattcaatgagttctgtgagtctttctagtaaattcttgaaactgagggtgttcaggggaaacccctg i panTro4.chr1_GL389091_random C 0 C 0 s nomLeu3.chr17 44139551 3502 - 99891981 CTCTATAGTCTTATGAATCAAAAACATTGATAGatgtagtgtaagattacaatcatattttccttttgacagtcacattataaagcatgatgtattgcaattaatcacaattagctgatcacaattaa----aataatgtttattattgctgataaacaatcatgattctcttgttctgaaatgtgctagtaattcttgtaattttaattcaaatttgcatattattactaattgatttaatctcattggatttggttcatggatccaatttattaaaatattgataatgggataatgatttgtctccccatttcatttacactaaaagccacaattcttacaatggtctgcaagcccatcatgatctgccccgtgttaaccaccgaaattcttttgtatcttcacccttgatcttaccagtggccctggccacctcactgtcctctgggcatgccaacatgctgctgccttatgaccaaggctctagttaatttcttggcttggaaagatagccctccatatatccattgatcagcttattcaacttcctcaagtctttactgaaacctcacatactcaatgagacctattcagtatttcaaactgcctcccacctacaacactccaaaaccccttactcttctGTGTAtttttgaaaggatttagtgagatataatttacatagtgtagagtgcacacattaatgtgtacaagtcagtggcttttagtatatgcacagataagtggagccatcatcacaatgaattttagagcatttccatcacttcaaaaagaaaccccaccttctttagctgttaacctcctatacgcccattccctactcaatcctaagcaatcacaaatctgttttctg-tctctatagattttcctattc----tattttcatgtaaatagaatcatataataggtggccttttgttcctg-g-----cttctttcagttagcataatgctatcaaggttcatatatgtattggtactttatttctttttataac--tataacattcagtttcatggatataacattttgtttatccagtaatatttttattgacgtttgagttgtgttcagcctttggctattttaaatactgctgctaaaaatacttgtgtacaatttgtgtttgaacacctctttccaataatctgggtgtatgcctaggaataaatttctaggtcatacgacaattctatgtttaatat-atttagaagccatcaaactatttgccaaagtggccagttctagccattgagtatctaactgtggttttgatttgtaattgcctgatgagtgatgctactgagta-tctttttatgggattattgaccgttcgtgtatcttcttgggaaacatatctattcctatcctttatcagttttaagttgggata----tttgttactgagttaaaacaatttttctatgttcaagatac--atatatataca----gacatatagatatgtgtttttcaaatatcttctcacaatttttgagctgccttttgacttgcttggt-tgtcctttgacacaccaatgtctttaatttttaagaaattttaaatatctaatttttattttgttgctcatgtttttggtgttatagctatttccttgctagatccaaaatcctgaagattttcctatatgctttattctagctcttgcatgtatgtctttaattcatttgagttaata-tttttgcatgctttggagtaagcgtttgaatttattattttgcaagtggtgattcacatgtacattgtggacccaaagtttgttcaaagactgtctcttcctcatttaattgcacatggcaccactgtaagaatccattgactatagatacatagttttatatatggactctcaattctcttccatcaatctatatatttttccttcatcagtatcatgttgtcttgattattgatgctt-tgcagtaaggtttggaggacgcgggtgtgaattatcctaatatattttcttttttcaagattattctggctattttgagtcccttacaataccatgtgtatttcagtaacagcttgtcagtttctagacagaagtctgttgggatacttgcagggatttcatcaaatctgtagttcaaattgtaaatta-tacaatattaaatcttccaa--ttaatggctgtaagatgtttgctaattatttagatcttctttaaacaataatttttaattttcagagt-aaaatattgtattacattt-tccagattaatt----attaattatttcattttttgatgctattgtaaattgaagtgttttcttaatttcattttggggttttcattgtagatgtgtgcaactgatttttgtatatttatcttgtatgctgtaatattgctgaaataatttactagttctatc----attcggtggattccttaaaattttctatatacaagaatacgttatttgcaaataaagttttatttcttcctgttcaataagggcaactcttatttctttacttgctgatttgtcctgcataaaatatttggtacaatgttgactagaagaggtaaaat--tatataccctattcttacctctgaccataacaggaaagtatcctttctttcaccattaagttgaatgttt-ctgttggcttttcacaggtgccatgaatctggtgtagaaagttctcttctattcctggttcattgagtttttatttttatttt----tatttttaatcattaaagcatttggattttgttaaatgccttttctgaatctattgagatgatcatgcaattcttgtttcttattctatggataagatgtattaccgtaatggattttgggctgttaaaccaccctgggattactagtataaatctcactttgtcatagtgtataattcttttatatattgctagatttgatttgttagcattttttaaggaattttgcatttatact------------tacagtagtttttatttttctatgatatttggactaatttttgtatcaaggtaacactggctctacagaataaattgggaaatgaatatttctc-ttt----aaaaaat--gtcaagaattaatatcaattattcAATACTAACAA---ATATTATTAATATTATAAAttattaatttctctaatttttattttcttccttctgcttgctttaggtttagtttgctattttttccagtgccttaatgtggaaggtcatcttatctcatcctttcatttttcttttcattttctaaATAGTGTCTTCATAGCAtcaggtgagctccc-------catgttggtagtactccatgtttattgctgtacaacaataacaggtaatatgtcctgaagacaatggaaacttaacattcaaaatcctcctagattccac--tttatatgatatgtctcttcctttgattgatcctaatttctaccctttctctattataaaccatgagtacaatagcattcaatgagtcctgtgagtctttctagtaaattcttgaaactgagggtgttctggggaaacccctg i nomLeu3.chr17 C 0 C 0 s rheMac3.chr3 124564084 3501 - 198365852 CTCTATATTCTTATGAATCAAAAACATTGACAGATGTAATATAAGATTACAATCATATTTTCTTTTTGACAGTCACATTATAAAGCATGATGTATTGCAATTAATCTCAATTAGCTGAACACAAATAAAATTAATAATGTTTATTattgctgataaacaatcatgactctcctgttctgaaacgtgcaagtaattcttgtaattttaatacaaatttgtatattgttactaattcatttaatctcactggatttggttcatggatccaatttattaaaatattgataatgggataatgatttgtctccccatttcatttacactaaaagccacaattcttacaacactctgcaagcccatcatgatctgactcatgctaactgccaaaattcctttatatcttcacccttaatcttaccagtggtcctggccacttcactgtcctctggacatgccaacatgctgctgccttatgacccagactcttgttaatttcttggtctggaaagatagccctccatatatccatcgatcagctcattcaacttcctcaagtctttactgaaatctcacattcttaaggagacctattcagtatttcaaactgcctcccagctgcaacactccA------CTTACTCTTCTGTGTAtttttgaaaggatttattgagatataatttacatagcatagagtgcacacattaatgtgtacaagtcaatggcttttagtatatgcacagataagtgaagccatcatcacaatgaattttagagcattttcatcacttcaaaaagaaaccccaccttctttaactgttcaactcctatgcacccatcccctactcaatcctaagcaaccccaactctgttttccattctctatagattttcctattctgaatattttcatgtaaatagaatcatataataggtggccttttgtgccta-ggtggccttccttcagttagcataatgctatcaaggttcatatatgtattggtactttgtttatttttataattgtataacattcaatttcatggatacaacatgttgtttatccaataatatttttattgacatttgagttgtgttcagtctttggctattttaaatactgctgctaaaaatacttgtgtgcaatttgtgtttgaacacctgtttccgataatctgggtatataccgaggaatacatttctaggtcatatgacaattctatgtttaatat-atttagaagctatcaaactattttccaaagtggcCAGTTCTAACCATTGAgtatctaattgtggtattgatttgtagttgcttgatgagtaatgctattgagca-tttttttatgggattattgactgttcgtgtatcttcttgggaaatatatctattcatatcgtttatcagttttaagttgggata----tttgttactaagttaaaacaatttttctatattcaagatacatatatatatgta----gacatatagatatgtgtttttcaaatatcttctcacaatttttgagctgccttttgacttctttggt-tgtcctttgaagcaccaatgtctttaatttttaagaaattttaaatatctaatttttattttgttgctcatgtttttggtgttatagctatttctttgctagatccaaaatcatgaagattttcccacatgctttcttctagctcttgcatgtatgcctttaattcatttgagttaata-tttttgtatgctttggggtaagggttcaaatttattattttgtgagtggtgatctatatgtaggttgttgacccaaagtttgttcaaagactatctcttcctcattgaattgcacatggcaccactgtaagaatccattgactatagatacgtagttttatatatggactctcaattctcttccatcaatccatatgtttttccttcatcagtatcgtgttgtcttgattattgatgctt-tgcagtaaggtttggagtatgggggtgtgaattattctaatatgttttcttttttcaagattattttggctattttgagtcccttacaattccatgtgtattttagaatcagtttgttagtttctagacagaagtctgataggacacttgcagggatttcatcaaatctgtagttcaaattgtcaagtactacaatattaaatcttccaa--ttaatggctgtaagatgtttgctaattatttagatcttctttaaacaattctttttaattttcagagt-aaaatattgtattacatttttccaaattaat-------tatttcat---ttttttgatgctattgtaaattgaagtgttttcttaatttcattttgacgttttcattgtagatgcgtgcaattgatttttgtatatttattttgtatgctgtaatattgctgaaataatttactagttctatcacttattcaggggattccttaacattttctataaacaagaatatgctatttgcaaacaaagttttatttctttctgttcaatatggacaactcttatttctttacttgccgatttgtcctgcataaaacctttagtacaatattgattagaagaggtaaaat--tgtatattctattcttgtgtctgaccacagcgggaaagtatcctttatttcaccattaagctgaatgtttgctcttggcttttcacaagtgccatgtatctggcataggaagtactcttctattcttggttcattgag------------tttt----tatttttaattatt-aagcatttggattttgttaaatgctttttctgaatcttttgtgatgatcatgaaattcttgtttcttattctatggataagatatgttacatttatggattttgggttgttcaaccaacctgggatgactagtataaatctcactttgtcatagtgtataattcttttatatgttgctagatttgatttgctagcatttttaaagaacatttgcatttatact-----tacgagatatagtag-ttttatttttctatgatatttggactaatttttgtatcaaggtaatgctgaccccacagaacaaagtaggaagtgaatatttctc-ttttttaaaaaaattagtcaataattagtatcaattattcAATATTAACAA---ATATTAT---TATTATAAAttattaatttctctaattttcattgtcttccttctgcttgctttaggtt---tttgctagtttttccagtaccttaatgtggaaggtcatattatctcagcctttcATTTGTCTTTTCATTTTCTAAATAGTGTCTT-----CAtcaggagggctccc-------caggttggtaatactccatgtttattgctgtacaacaatgacaggtaatatgtcctgaagacaatggaaacttaacattcaaaatcctcttagattccaccacttttatgatatgtctcttccttcgattggtcctaatttctatcctttctctattttaaaccatgaatacaatagcattcaatgagttctgtgag----tctagtaaattcttgaaactgagggcactctggggaaacccctg i rheMac3.chr3 C 0 C 0 s macFas5.chr3 125015443 3503 - 192294377 CTCTATATTCTTATGAATCAAAAACATTGACAGATGTAATATAAGATTACAATCATATTTTCTTTTTGACAGTCACATTATAAAGCATGATGTATTGCAATTAATCTCAATTAGCTGAACACAAATAAAATTAATAATGTTTATTATTGCTGATAAACAATCATGACTCTCCTGTTCTGAAACGTGCAAGTAATTCTTGTAATTTTAATACAAATTTGTATATTGTTACTAATTCATTTAATCTCACTGGATTTGGTTCATGGAT-CAATTTATTAAAATATTGATAATGGGATAATGATTtgtctccccatttcatttacactaaaagccacaattcttacaacactctgcaagcccatcatgatctgactcatgctaactgccaaaattcctttatatcttcacccttaatcttaccagtggtcctggccacttcactgtcctctggacatgccaacatgctgctgccttatgacccagactcttgttaatttcttggtctggaaagatagccctccatatatccatcgatcagctcattcaacttcctcaagtctttactgaaatctcacattcttaaggagacctattcagtatttcaaactgcctcccagctgcaacactcca------cttactcttctgtgtatttttGAAAGGAtttattgagatataatttacatagcatagagtgcacacattaatgtgtgcaagtcaatggcttttagtatatgcacagataagtgaagccatcatcacaatgaattttagagcattttcatcacttcaaaaagaaaccccaccttctttaactgttcaactcctatgcacccatcccctactcaatcctaagcaaccccaactctgttttccattctctatagattttcctattctgaatattttcatgtaaatagaatcatataataggtggccttttgtgccta-ggtggccttccttcagttagcataatgctatcaaggttcatatatgtattggtactttgtttctttttataattgtataacattcaatttcatggatacaacatgttgtttatccaataatatttttattaacatttgagttgtgttcagtctttggctattttaaatactgctgctaaaaatacttgtgtgcaatttgtgtttgaacacctgtttccgataatctgggtatataccgaggaatacatttctaggtcatatgacaattctatgtttaatat-atttagaagctatcaaactattttccaaagtggccagttctaaccattgagtatctaattgtggtactgatttgtagttgcttgatgagtaatgctactgagca-tttttttatgggattattgactgttcgtgtatcttcttgggaaacatatctattcatatcgtttatcagttttaagttgggata----tttgttactaagttaaaacaatttttctatattcaagatacatatatatatatatgtcgacatatagatatgtgtttttcaaatatcttctcacaatttttgagctgccttttgacttctttggt-tgtcctttgaagcaccaatgtctttaatttttaagaaattttaaatatctaatttttattttgttgctcatgtttttggtgttatagctatttctttgctagatccaaaatcatgaagattttcccacatgctttcttctagctcttgcatgtatgcctttaattcatttgagttaata-tttttgtatgctttggggtaagggttcaaatttattattttgcgagtggtgatccacatgtaggttgttgacccaaagtttgttcaaagactatctcttcctcattgaattgcacatggcaccactgtaagaatccattgactatagatacgtagttttatatatgaactctcaattctcttccatcaatccatatatttttccttcatcaatatcgtgttgtcttgattattgatgctt-tgcagtaaggtttggagtatgggggtgtgaattattctaatatgttttcttttttcaagattattttggctattttgagtcccttacaattccatgtgtattttagaatcagtttgttagtttctagacagaagtctgataggatacttgcagggatttcatcaaatctgtagttcaaattgtcaagtactacaatattaaatcttccaa--ttaatggctgtaagatgtttgctaattatttagatcttctttaaacaattctttttaattttcagagt-aaaatattgtattacatttttccaaattaat-------tatttcat---tttattgatgctattgtaaattgaagtgttttcttaatttcattttgacgttttccttgtagatgcgtgcaattgatttttgtatatttattttgtatgctgtaatattgctgaaataatttactagttctatcacttattcaggggattccttaacattttctataaacaagaatatgctatttgcaaacaaagttttatttctttctgttcaatatggacaactcttatttctttacttgccgatttgtcctgcataaaacctttagtagaatattgattagaagaggtaaaat--tgtatattctattcttgtgtctgaccacagcgggaaagtatcctttatttcaccattaagctgaatgtttgctcttggcttttcacaagtgccatgtatctggcgtaggaagtactcttctattcttggttcattgag------------tttt----tatttttaattatt-aagcatttggattttgttaaatgctttttctgaatcttttgtgatgatcatgcaattcttgtttcttattctatggataagatatgttacatttatggattttgggttgttcaaccaacctgggatgactagtataaatctcactttgtcatagtgtataattcttttatatgttgctagatttgatttgctagcatttttaaagaacatttgcatttatact-----tacgagatat-gtag-ttttatttttctatgatatttggactaatttttgtatcaaggtaatgctgaccccacagaacaaagtaggaagtgaatatttctc-ttttttaaaaaaattagtcaataattagtatcaattattcAATATTAACAA---ATATTAT---TATTATAAAttattaatttctctaattttcattgtcttccttctgcttgctttaggtt---tttgctagtttttccagtaccttaatgtggaaggtcatattatctcagcctttcATTTGTCTTTTCATTTTCTAAATAGTGTCTT-----CAtcaggagggctccc-------caggttggtaatactccatgtttattgctgtacaacaatgacaggtaatatgtcctgaagacaatggaaacttaacattcaaaatcctcttagattccaccacttttatgatatgtctcttccttcgattggtcctaatttctatcctttctctattttaaaccatgaatacaatagcattcaatgagttctgtgag----tctagtaaattcttgaaactgagggcactctggggaaacccctg i macFas5.chr3 C 0 C 0 s papAnu2.chr3 122277912 3501 - 180432695 CTCTATATTCTTATGAATCAAAAACATTGACAGATGTAATATAAGATTACAATCATATTTTCCCTTTGACAGTCACATTATAAAGCATGATGTATTGCAATTAATCTCAACTAGCTgatcacaaataaaattaataatgtttattattgCTGATAAACAATCATGACTCTCCTGTTCTGAAATGTGCAAGTAATTCTTgtaattttaatacaaatttgTATATTGttactaattcatttaatctcACTGGATTTGGTTCATGGAtccaatttattaaaatattgataatggGATAATGATTTGTCTCCCCATTTCATTTACACTAAAAGCCACAATTTTTACAACATTCTGCAAGCCCATCATGATCTGACTCATGCTAACTGCCAAAATTCCTTTATATCTTCACCCTTAATCTTACCAGTGGTCCTGGCTACTTCACTGTCCTCTGGACATGCCAACATGCTGCTGCCTTATGACCTAGACTCTTGTTAATTTCTTGGTGTGGAAAGACAGCCTTCCGTATATCAATCGATCAGCTCATTCAACTTCCTCAAGTCTTTACTGAAATTTCACATTCTCAA-GAGACCTATTCAGTATTTCAAACTGCCTCCCAGCTGCAACACTCCA------CTTACTCTTCTGTATATTTTTGAAaggatttattgagatataatttacatagcaTGGAGTGCACACATTAATGTGTACAAGtcaatggcttttagtatatgCACAGATAAGTGAAGCCATCATCACAAtgaattttagagcattttcatcacttcaaaaaGAAACTCCACCTTCTTTAACTGTTAAACTCCTATGCACCCATCCCCTACTCAATCCTAAGCAACCCCAACTCTGTTTTCCATTCTCTATAGATTttcctattctgaatattttcatgtaaatagATTCATATAATAGGTGGCCTTTTGTGCCTAGGGTGGCCTTCCTTCAGTTAGCATAATGCTATCAAGGTTCATATATGTATtggtactttgtttctttttataattgtATAACATTCAATTTCATGGACACAACATGTTGTTTAtccaataatatttttattgacatttGAGTTGTGTTCAGTCTTTGGCTATTTTAAATACTGCTGCTAAAAATACTTGTGTACAATTTGTGTTTGAACACCTGTTTCCGATAATCTGGGTATATACCGAGGAATACATTTCTAGTTCATATGACAATtctatgtttaatat-atttagaagctatcaaactattttccaaagtggccagTTCTAGCCATTGAGTATctaactgtggttttgatttgtagttGCCTGATGAGTAATGCTATTGAGCA-TTTTTCTATGGTATTATTGACTGTTTGTGTATCTTCTTGGGAAACATATCTGTTCCTATCGTTTATCAGTTTTAAGTTGGGATA----TTTGTTACtaagttaaaacaatttttctatattcaagatacatatatatatgta----gacataTAGATATGTGTTTTTCAAATCTCTTCTCATAATTTTTGAGCTGCCTTTTGACTTGTTTGGT-TGTCCTTTGAAGCAccaatgtctttaatttttaagaaattttaaatatctaatttttattttgttgctcatgtttttGGTGTTATAGCTATTTCTTTGCTAGATCCAAAATCATGAAGATTTTCCCACATGCTTTCTTCAAGCTCTTGCATGTATGCCTTTAATTCAtttgagttaata-tttttgtatgctttggGGCAAGggttcaaatttattattttgcgAGTGGTGATCCACATGTAGGTTGTTGACCCAAAGTTTGTTCAAAGACTATCTCTTCCTCATTGAATTGCACATGGCACCACTGTGAGAATCCATTGACTATAGATACGTAGTTTTATATATGGAATCTCAATTCTCTTCCATCAACCCATATATCTTTCCTTCATCAATATCGTGTTGTCTTGATTATTGATGCTT-TGCAGTAAGGTTTGGAGTATGGGGGTGTGAATTATcctaatatgttttcttttttcaagattattttggctattttgagtCCCTTACAATTCCTTGtgtattttagaatcagtttgttagTTTCTAGACAGAAGTCTGATAGGATACTTGCAGGGATTTCATCAAATCTGTAGTTCAAATTGTCAAGTActacaatattaaatcttccaa--ttAATGGCTGTAAGATGTTTGCtaattatttagatcttctttaaacaattctttttaattttcagagt-aaaatattgtattacatttctccaaattaat-------tatttcat---ttttttgatgctattgtaaattgaagtgttttcttaatttcattttgacGTTTTCATTGTAGATGtgtgcaattgatttttgtatatttattttgtatgctGTAATATTGCTGAAATAATTTACTAGTTCTATCACTTATTCAGGggatttcttaacattttctataAACAAGAATATGCTATTTgcaaacaaagttttatttctttctgttcaaTATGGACAACTCTTATTTCTTTACTTGCCAATTTGTCCTGCATAAAACCTTTAGTACAATATTGACTAGAAGAGGTAAAAT--TGTatattctatttttgtctctGACCACAGCGGGAAAGTATCCTTTATTTCACCATTAAGCTGAATGTTTGCTCTTGGCTTTTCACAAGTGCCATGTATCTGGCGTAGGAAGTACTCTTCTATTCTTGGttcattgag------------tttt----tatttttaattatt-aagcatttggattttgttaaatgctttttctgaatcttttgTGATGATCATGCAACTCTTGTTTCTTGTTCTATGGATAAGATATGTTACATTTATGGATTTTGGGTTGTTCAACCAACCTGGGATGACTAGTATAAATCTCACTTTGTCATACTGTATAATTCTTTTATGTGTTGCTAGATTTGATTTGCtagcatttttaaagaacatttgcaTTTATACT-----TAGGAgatatagtag-ttttatttttctatgatatttggactaatttttgtatcaagATAATGCTGACCCCACAGAACAAAGTAGGAAgtgaatatttctc-ttttttaaaaaaattagtcaataattagtatcaattattcaatattaacaa---atattat---tattataaattattaatttctctaattttcattgtcttccttctgcttgctttaagTT---TTTGCTAGTTTTTCCAGTACCTTAATGTGAAAGGTCATCTTATCTCAGcctttcatttgtcttttcattttctaaatagtGTCTT-----CATCAGGAGGGCTCCC-------CAGGTTGGTAGTACTCCATGTTTATTGCTGTACAACAATGACAGGTAATATGTCCTGAAGACAATGGAAACttaacattcaaaatcctcttaGATTCCACCACTTTTATGATATGTCTCTTCCTTCGATTGGTCCTAATTTCTatcctttctctattttaaacCATGAATACAATAGCATTCAATGAGTTCTGTGAG----TCTAGTAAATTCTTGAAACTGAGGGCGCTCTGGGGAAACCCCTG i papAnu2.chr3 C 0 C 0 s chlSab2.chr21 121533946 3500 - 127223203 CTCTATATTCTTATGAATCAAAAACATTGACAGATGTAATATAAGATTACAATCATATATTCTTTTTGACAGTCACATTATAAAGCATGATGTATTGCAATTAATCTCAATTAGCTGAACACAAATAAAATTAATAATGTTTATTATTGCTGATAAACAATCATGACTCTCCTGTTCTGAAACGTGCAAGTAATTCTTGTAATTTTAATACAAATTTGTATATTGTTACTAATTCATTTAATCTCACTGGATTTGGTTCATGGATCCAATTTATTAAAATATTGATAATGGGATAATGATTtgtctccccatttcatttacactaaaagccacaattcttacaacactctgcaagcccatcatgatctgactcatgctaactgccaaaattcctttatatcttcacccttaatcttaccagtggtcctggccacttcactgtcctctggacatgccaacatgctgctgccttatgacccagactcttgttaatttcttggtctggaaagacagccctccgtatatccatcgatcagctcattcaacttcctcaagtctttactgaaagttcacattctcaa-gagacctattcagtatttcaaactgcctcccagctgcaacactcca------cttactcttctgtatatttttGAAAGGAtttattgagatataatttacatagcatagagtgcacacattaatgtgtacaagtcaatggcttttagtatatgcacagataagtgaagccatcatcacaacgaattttagagcattttcatcacttcaaaaagaaactccaccttctttgactgttaaactcctatgcacccatcccctgctcaatcctaagcaaccccaactctgttttccattctctatagattttcctattctgaatattttcatgtaaatagaatcatataataggtggccttttgtgccta-ggtggccttccttcagttagcataatgttatcaaagttcatatatgtattggtactttgtttctttttataattgtataacattcaatttcatggatacaatatgttgttcatccaataatatttttattgacatttgagttgtgttcagtctttggctattttaaatactgctgctaaaaatacttgtgtacaatttgtgtttgaacacctgtttccgataatctgggtatataccgaggaatacatttctagatcatatgacaattccatgtttaatat-atttagaagctatcaaactattttccaaagtggcCAGTTCTAGCCATTGAgtatctaattgtggttttgatttgtagttgcctgatgagtaatgctattgagcattttttttatgggattattgactgttcgtgtatcttcttgggaaacatatctattcctatcgtttatcagttttaagttgggata----tttgttactaagttaaaacaacttttctatattcaagatacatatatatatgta----gacatatagatatgtgtttttcaaatatcttctcacaatttttgagctgccttttgacttgtttggt-tgtcctttgaagcaccaatgtctttaatttttaagaaattttaaatatctaatttttattttgttgctcatgtttttggtgttatagctatttctttgctagatccaaaatcatgaagattttcccacatgctttcttctagctcttgcatgtatgcctttaattcatttgagttaata-tttttgtatgctttggggtaagggttcaaatttattattttgcgagtggtgatccacatgtaggttgttgacccaaagtttgttaaaagactatctcttcctcattgaattgcacatggcaccactgtaagaatccattgactatagatacatagttttatatatggactctcaattctcttcaatcaatccatatatttttccttcatcaatatcgtgttatcttgattaatgacgctt-tgcagtaaggtttggagtatgggggtgtgaattatcctaatatgttttcttttttcaagattattttggatattttgagtcccttacaattccatgtgtattttagaatcagtttgttagtttctagacagaagtctgataggatacttgcagggatttcatcaaatctgtagttcaaattgtcaagtattacaatattaaatcttccaa--ttaatggctataagatgtttgctaattatttagatcttctttaaacaattctttttaattttcagagt-aaaatattgtattacatttttccaaattaat-------tatttcat---ttttttgatgctattgtaaattgaagtgttttcttaatttcattttgatgttttcattgtagatgtgtgcaattgatttttgtatatttattttgtatgctgtaatattgctgaaataatttcctagttctgtcacttattcaggagattccttaacattttctataaacaagaatatgctatttgcaaacaaagttttatttctttctgttcaatatggacaactcttatttctttacttgccgatttgtcctgcataaaacctttagtacaatattgactagaagaggtaaaat--tgtatattctatccttgtctctgaccacagcggggaagtatcctttatttcaccattaagctgaatgtttgctcttggcttttcacaagtaccatgtatctggcgtaggaagtactcttctattcttggttcattgag----------------------tttttaattatt-aagcatttggattttgttaaatgctttttctgaatcttttgtgatgatcatgcaattcttgtttcttattctatggataagatatgttacatttatggattttgggttgttcaaccaacctgggatgactagtataaatctcactttgtcatagtgtataattcttttatatgttgctagatttgatttgctagcatttttaaagaacatttgcatttatact-----tatgagatatagtag-ttttatttttctatgatatttggacgaatttttgtatcaaggtaatgctgaccccacagaacaaagtaggaagtgaatatttctctttttttaaaaaaattagtcaataattagtatcaattattcAATATTAACAA---A---TAT---TATTATAAATTATTAATGTctctaattttcattgtcttccttctgcttgctttaggtt---tttgctagtttttccagtaccttaatgtggaaggtcatcttatCTCAGCCTTTCATTTGTCTTTTCATTTTCTAAATAGTGTCTT-----CATCAGGAGGGCTCCCCAGGTTGCAggttggtagtactccatgtttattgctgtacaacaatgacaggtaatatgtcctgaagacaatggaaacttaacattcaaaatcctcctagattccaccacttttatgatatgcctcttcctttgattggtcctaatttctatcctttctctattttaaaccatgaatacaatagcattcaatgagttctgtgag----tctagtaaattcttgaaactgaaggtgctctggggaaacccctg i chlSab2.chr21 C 0 C 0 s calJac3.chr8 20077108 3452 + 128169293 CTCTGTATTCTTAGGAATCAAAAACATTGactgatgtagcataagattacaatcatattttccttctgacagtcacattataaagcatgatatactgcaattaatctcaattagctgatcacaattaaaattaataatgtttatcattgctgat----aatcatgactctcttgtcctgaaatgcgcaattaattcttatacttttaatacaaatttgtatattattactaattaatttaatctcattggatttagttcattgttccaatttactaaaatATTGATAATAGGAAAATTATTtgtctcctcatttcatttacactaaaagccatcattcctacaatggtatgcaagccc-tcatggtctgtctcatgttaagtgccaaaa--cttttatatcttcacccttgatcttacctgtggttctggcctcctcattgttctctggatatgccaacatcttgctgccttatgatccagactttagttaatttcttggcttggaatgataggccttcatatatccattgatcagctcattcaacttcctcaagtctttactgaaacctcacattctcagtgagacctattcagtatttcaaactgcctcccaggtgcaacactccaaaactccttactctgctGTGTAttttt-aacaaacttattacgatattatttacat--cacacagttcacacattagagtgtacaagtcaacggtttttagtgtatgtacagataagtgcagccatgatcacaatgaattttagaacattttcatcacgtcagaaagaaacctca---tgttaaactgttaaccttccatgcaccc-tcacctactcaatcctaagcaaccacaggtctgttttctg-tctctgtagattttcttattctgaatattttcatgtaaatagaatcatataataggtggccttttgtgcctg-g-----cttctttcaattagcataatattatctaggtttatatatgtattggtac----tttctttttataactatataatattcaatttcatggatataacattttgtttatccaatcatatttcgattgacatttgagttgtgttcaccctttggctattttcagtactgctgctaaaattacttgtgtacaatttgtgtttgaacatgtgtttccaataatctgggtatatacctaggaataaatttctagatcatatgacaattctatgtttaatataaggtagaatccatcaaactattttccaaagtggACAATTATAGCCATTGAATATACAACtgtggatttgatttgtagttgcatgatgagtaatgctattgagca-tcttttcatggggttactgaccatttgtgtatcttcttgggaaacgtatttatttatatcctttttcagttttaagttaggatgactttttgttactgtgttaaaacaatttttttatattcaagatacatacagatataga--------tatgagtatgtgtttttcaaatattttttcacaatttttgagttgccttttgacttgcttgatgtgtcctt----------atgtctttaattattaagaaaatttaaatatctgatttttattttgttgctcatgtctttggggctatagctgtatctttgctagatccaaagtcatgaaaattttcccacatgctttcttctagctcgtgcatgtgcatctttaattcatttgagtcaatattttttgtatgcattggggtaagagttcaaatttattattttgcaggtggtgatccacatgtacgttgttgacccaacatttattcagagactatcttttcctcattgaattgcacatggcatcactgtaagaatctattgcctatagacacatagttttatatatgggctctaaattctcttccatcaatgtatatatatttccttcatcagtatcatgttgtcttgattactgataatgatgcagtaaggtttgaagtacagaggtatgatttatcctactaagtttttctttttcaagactatgttgttgattttgagtccctgagaagtccatgtgtactttagaatcagcttgtcagttttcagatagaagt------ggattcttgcagggatttcataaaatctgtagttcaaattgtaaagtactgccatcttaacaatatcaatgttcttggctgtaagatttttgctgtttatttagatcttctctaaacaa---tttttaattttcagagtaaaaatattgtattatatat-tccaaattgattattaatcattttat---ttttttgatgctattataaattgaagtgttttcttaatttcattttggggtgttcattgtagatgtgtataattgagttttatatatttatcttgtatgctgtaatattactgaaataatttactagttat-------attcagtgaactccttaaacttttctacatacaagaatatgttatttacaaataaagttttatttcttcctgttcaatacgggcaactcttattccctta----cccatttgcccagcataaaatctttagtacagtgttgactagacgaggtaaaagtatatatatcctattcttgtctctgagcata-tgggaaagtatcctttctttcattattaagttgaatgtttgctgttggcttttcacaggtgccatgtacctggtgtacgaagttcctttctattcccggtttattgag------------ttttaaaaaatttttaattattaaagcatttggattttgttaaataccttttctgcatctattgtgatgatcat---------------------------------tattacatttatgaatttggggctgttaaaccaacctgggattactggtataaatctcactttgtcatagtgtgcaattcttttacatgttgctagatttgatttgctaaga-ttttaaaggaattttgcatttatactcatgacatgagacataatag-ttat-tttttttatgatatttggactaatttttgtatcaacgcaatactggccccacagaataaattggtaagtgactatgtctc-tctttttttaaagttagtcaggaattaatattaatAATTCAATGTTAACAACTTATATTAT---TATTATAAAttattaatttctctaatttt-attttcttccttctccttgctttaggtttagtttgctattttttccaatgtcttaatgcagaagTTCATCTTATCTCAGTGTTTCGTTT-CATTTTCATTTTCTTAATA-TGTCTTAATAGTAtcagatgacctcct-------gtggttggtagtactccatggttattgccatacaacaatgacaggtagtatttcttgaagacaatggaaacttaacattcaaaatcctcctagattccac--cttatatgatatgcctcttcctttgattgctctgaatttctatcctttctctattataaatcataagtacaatagtgttcactgagttctgtaaatctttctagtaaattcttgaaactgagtgtgttctggggaaaccccca i calJac3.chr8 C 0 C 0 e ponAbe2.chrUn 5688366 5219 + 72422247 I e canFam3.chr18 4101139 1236 + 55844845 I a score=1666312.000000 s hg38.chr1_KI270765v1_alt 134190 730 + 185285 aactggcagttggtgtcagaagtgagaatcttcttacatggcctcttcctttgaactgtgcagctggACGCAAACTCTGCACAATTTGGGCCAGAACTCTCGTGTTGACTT-TGTAGCCTAAAGT--------------ATCTTGTAGTTTGTCTAACCCTCAATAAATTTGCTTTCATCAAATATTGTATTTGTTACCCCAAAATTACCATCACG---TTTTTTTTTCTCCAAATAACTAACAT-AGGAGAAATAGCCAGCTGAGTTTGTAACTCAACA----GAAATAAGTGATCCATATACCATATACCATATAAGTGGCCATTTCATTTTGCCTTCTTCCACCAAATCTTAGCAACCTCAACCATTACCAAGAGCCA----------------------CTGTA-GGCCTACCAGCTAC-----------AAACAAACGAGTATCTTGTAAAAACACTTCATACTCCCATTTGATAATTTTCCCAGCAAAGAGATGCCTACTTTAACTCTATGCAAGTGGCTCATATTCACGAAGTCTGTAGATATTATTCATGTAGAGTGAGAAAATCATCCCAGCGGTGCCAGCACATTCTCCTTCCCATGATCTGCTTAGTTTGCAAACATATTCAGGCCATGGGTGAGAGATTTGTATTTCA------CAGTACAACAATTTTATGGAGGGCATTGAAACTTACATTGAGCATTTTAGTAcagtcacacatcactgaatgatagggatacgttttaacagatgtattcgtaggcaattttaccattttgcaaaca s panTro4.chr1_GL389091_random 156378 683 + 179278 aactggcagttggtgtcagaggtgagaatcatcttatatggcctctccctttgaactgtgcagctggACGCAAACTCTGCACAATTTGGGCCAGAAGTCTCGTGTTGACTT-TGCAGCCTAAAGT--------------ATCTTGTAGTTTGTCTAACCCTCAATAAATTTGCTTTCATCAAATATTGTGTTTGTTACCCCAAAATTACCATCACG---TTTTTTT--CTCCAAATAACTAACATTGGGAGAAATCGCCAGCTGAGTCTGTAACTCAACA----GAAACAAGTGATCCTTATACCATATACCATATAAGTGGCCATTTCATTTTGCCTACTTCCACCAAATCTTAGCAACCTCAACCATTGCCATGAGCTA----------------------CTGTA-GGCCTACCAGCTAC-----------AAACAAACAAGTATCTTGTAAAAACACTTCATACTCCCATTTGATAAATTTCCCAGCAAAGAGATGCCGACTTTAACTCTATGCAAG----------------------------------------------AAAATCATCCCAGCGATGCCAGCACATTCTCCTTCCCATGATCTGCTAAGTTTGCAAACATATTCAGGCCATGGGTGAGAGATTTGTATTTCA------CAGTACAACAATTTTATGGAGGGCACTGAAACTTACATTGAACATTTTAGTAcagtcacacatcactgaatggtagggatacgttctaacagatgtatccataggcaatttcatcattttgcaaaca i panTro4.chr1_GL389091_random C 0 C 0 s nomLeu3.chr17 44143053 721 - 99891981 aactggaagttggtgtcagaggtgagaatagtcttatatggcctcttcctttgaactttgcagctggACCCAAACTCTGCACAATTTGGGCCAGAATTCTCGTGTTGACTT-TGCAGCCTGAAGT--------------ATCTTGTAGTTTGTCTAACCCTCAATAAATTTGCTTTCATCAAATATTGTATTTGTTACCCCAAAACTACCATCAAA---TTTTTTT--CTCCAAATAACTAACATTGGGAGAAATAGCCAGCTGAATCTGTAACTCAACA----GAAACAAGTGAT-------CCATATACCATATAAGTGGCCATTTCATTTTGCCTCCTTCCTCCAAATCTTAGCAACTTCAACCATTGCCAAGAGCCA----------------------CTGTA-GGCCTACCGGCTAC-----------AAACAAACATGTATCTTTTAAAAACACTTCACACTCCCATTTGATAAATTTCCCAGCAAAGAGATGCCTACTTTCACTCTATGCAGGTGGCTCATATTCACGAAGTCTAGAGATATTATTAATGCAGTATGAGAAAACCATCCCAGTGATGCTAGCACATTCTCCTTCCCATGATCTGCTTAGTTTGCAAACATATTCAGGCCATGGGTGAGAGATTTGTATTTCA------CAGTACAACAATTTTATGGAGGGCATTGAAACTTAGATTGAGCATTCTAGTAcaatcacacgtcactgaatgataggg-tatgttctacgagatgcatccatagacaatttcatcattttgcaaaca i nomLeu3.chr17 C 0 C 0 s rheMac3.chr3 124567585 724 - 198365852 aattggcagttggtgtcagaagtgagtgtagtcttatatggcctcttcctttgaactttgctgttggACCCAAAGTCTGAACAATTTGGGCCAGAATTCTCATGCAGACTT-TGCAGCCTAAAGT--------------ATCTTGTAGTTTGTCTAACCCTCAATAAATTTGCTTTCATCAAATATTGTATTTATTACCCCAAAATTACCATCATGATTTTTTTTC--CTCCAAATAACTAACATTGGGAGAAATAGCCAGCTGAATCTGTAACTCAACA----GAAACAAGTGAT-------CCATATATCGTTTAAGTGGCCATTTCATTTCACCTCCTTCCACCAAATCTTAACAACCTCAACCATTGCCATGAGCCA----------------------CTGTA-GGCTTACCAGCTAC-----------AAACAAACAAGTATGTTTTGAAAACACTTCATACTCCCATTTGATAAATTTCTCAGCAAATAGATGCCTATTTTAACTCTATCCAAGTGGCTCATA-TTGGGAAGTCTGGCGATATTATTAATGCAGTATGAGAAAATCATCCCAGTGATACGAGCACATTCTTCTTCCCATGATCTACTTAGTTTGCAAACATATTCAGGCCATGTGTGAGAAATTTGTATTTCA------CAGTACAACAATTTTATGGAGGGCATTGAAACTTAGATTGAGCATTTTACTAcagtcacacatcgctgaatgatggggatacattctaagagctgcatccataggtaatttcatcactttgcaaaca i rheMac3.chr3 C 0 C 0 s macFas5.chr3 125018946 724 - 192294377 aattggcagttggtgtcagaagtgagtgcagtcttatatggcctcttcctttgaactttgctgttggACCCAAAGTCTGAACAATTTGGGCCAGAATTCTCATGCAGACTT-TGCAGCCTAAAGT--------------ATCTTGTAGTTTGTCTAACCCTCAATAAATTTGCTTTCATCAAATATTGTATTTATTACCCCAAAATTACCATCATGATGTTTTTTC--CTCCAAATAACTAACATTGGGAGAAATAGCCAGCTGAATCTGTAACTCAACA----GAAACAAGTGAT-------CCATATATCGTTTAAGTGGCCATTTCATTTCACCTCCTTCCACCAAATCTTAACAACCTCAACCATTGCCATGAGCCA----------------------CTGTA-GGCTTACCAGCTAC-----------AAACAAACAAGTATCTTTTGAAAACACTTCATACTCCCATTTGATAAATTTCTCAGCAAATAGATGCCTATTTTAACTCTATCCAAGTGGCTCATA-TTGGGAAGTCTGGCGATATTATTAATGCAGTGTGAGAAAATCATCCCAGTGATACGAGCACATTCTTCTTCCCATGATCTACTTAGTTTGCAAACATATTCAGGCCATGTGTGAGAAATTTGTATTTCA------CAGTACAACAATTTTATGGAGGGCATTGAAACTTAGATTGAGCATTTTAGTAcagtcacacatcgctgaatgatggggatacattctaagagctgcatccataggtaatttcatcattttgcaaaca i macFas5.chr3 C 0 C 0 s papAnu2.chr3 122281413 723 - 180432695 AACTGGCagttggtgtcagaagtgagTGTAGTCTTATATGGCCTCTTCCTTTGAACTTTGCTGTTGGACCCAAAGTCTGAACAATTTGGGCCAGAATTCTCGTGCAGATTT-TGCAGCCTAAAGT--------------ATCTTGTAGTTTGTCTAACCCTCAATAAATTTGCTTTCatcaaatattgtatttattacCCCAAAATTACCATCatg--tttttttt--ctccaaataactAACATTGGGAGAAATAGCCAGCTGAATCTGTAACTCAACA----GAAACAAGTGAT-------CCATATATCGTTTAAGTGGCCATTTCATTTCACCTCCTTCCACCAAATCTTAACAACCTCAACCATTGCCATGAGCCA----------------------CTGTA-GGCTTTCCAGCTAC-----------AAACAAACAAGTATCTTTTGAAAACACTTCATACTCCCATTTGATAAATTTCTCAGCAAATAGATGCCTATTTTAACTCTATCCAAGTGGCTCATATTTGGGAAGTCTGGCGATATTATTAATGCAGTGTGAGAAAATCATCCCGGTGATGCGAGCACATTCTTCTTCCCATGATCTACTTAGTTTGCAAACATATTCAGGCCATGTGTGAGAAATTTGTATTTCA------CAGTACAACAATTTTATGGAGGGCATTGAAACTTAGATTGAGCATTTTAGTACAGTCACACATCGCTGaatgatggggatatgttctaaGAGCTGCATCcataggcaatttcatcattttgCAAACA i papAnu2.chr3 C 0 C 0 s chlSab2.chr21 121537446 723 - 127223203 aactggcagtaggtgtcagaagtgagtgtagtcttatatggcctcttcctttgaactttgctgttggACCCAAAGTCTGAACAATTTGGGCCAGAATTCTCATGCAGACTT-TGCAGCCTAAAGT--------------GTCTTGTAGTTTGTCTAACCCTCAATAAATTTGCTTTCATCAAATATTGTATTTATTACCCCAAAATTACCATCATGA-TTTTTTTT--CTCCAAATAACTAACATTGGTAGAAATAGCCAGCTGAATCTGTAACTCAACA----GAAACAAGTGAT-------CCATATATTGTTTAAGTGGCCATTTCATTTCACCTCCTTCCACC-AATCTTAACAACCTCAACCATTGCCATGAGCCA----------------------CTGTA-GGCCTACCAGCTAC-----------AAACAAACAAGTATCTTTTTAAAACACTTCATATTCCCATTTGATAAATTTCTCAGCAAATAGATGCCTATTTTAACTCTATCCAAGTGGCTCATATTTGGGAAGTCTGGCGATATTATTAATGCAGTGTGAGAAAATCATCCCGGTGATGCCAGCACATTCTCCTTCCCATGATCTACTTAGTTTGCAAACATATTCAGGCCATGTGTGAGAAATTTGTATTTCA------CAGTACAATAATTTTATGGAGGGCACTGAAACTTAGATTGAGCATTTTAGTAcagtcacacatcactgaatgatggggatatgttctaagagctgcatccgtaggcaatttcatcatttcgcaaaca i chlSab2.chr21 C 0 C 0 s calJac3.chr8 20080560 714 + 128169293 aactggcagttggtgtcagaagtgagaatagtcttatacggcct----ctttgaactttgcagctggACCCAAACTCTGTGCAATCTGGGCCAGAAGTGTCATGCAGACTT-TGCAGGCCAAAGC--------------ATCTTGCAGTTTGTCTAACCCTCAATAAATTTGCTCTCCTCAAATATTGTATTTATTATCCC-AAATTACCATCATG--CTTTTTTT--CTCCAAATAACTAACATTGGGAGAAATAGTCAGCTCAATCTGGAATTGAACA----GAAACAAGTGAT-------CCATATACCCTTTCACTGGAAATTTCATTTTGCCTCCTTCCACCAAATCTTAGCAACCTCAGCAATTGCCATGAGCCA----------------------CTGTA-GGCCTATTGTCTAC-----------AAGCAAACAAGTACCTTTTATAAACACTTCATACTCCCAATTGATAAATTCCCCAGCAGACAAATGCCTGTTTTAATTCTATGCAAGTGGCTCATATTTGCGAAGTCTGGAGATATTACTAATGTGGCATCAGAAAATCATCCCAGTGATGCCAGCACGTTCTCCTTCCCATGACCTGCTTAGTTTGCAAACATATTCAGGTCATGGGTGAGAGATTAGTATTTCA------CAATACAACAATTTT-TGGAGGGCATTGAAACTTAGATTCAGCATT-TAGTAcaggcacagatcactgaatgatggggatatgttctaagagatgcagccacaggaaatttcagcattttgcaaa-- i calJac3.chr8 C 0 C 0 s canFam3.chr18 4102375 707 + 55844845 AACTGG--GTGGATGT--GAACTGGGATTGGTCTCATGAGGACTCTTGTCTCTCATTTTGTAGACAGATTCTACTGCCTTGAATTTTGAGTCA-AAGTTTGGGACAGACTTGTCCAGTTTGGAGGTCTGTCTGTACTCAACCTCACAATTTGTTTAACTC----------TGGTTTCAGTAAATCTTTTAAGATTTACTGTCAAAATAGCATCATG---TCTTTTT--CCCTGGG-AACCAAAGCTGGGAAAATTAGCCAGAAGACTCTGCGAACTGTGAATGTAAAACAGGTGGC-------TTGTATACCACCTCAGTGGCCATTTCCCTTATTTTGCCTCTACCAAACCTTAGTAACCACAATTCCTGCCATCAGACAGAGCTCTTATCAAACTTGCTATCTGGATGGCCAACTGATTATTGACTAAAAGAAAATAAAGATATATATTTTTGCAACACTTCATGCTTCTGTTTGATACATTCCCCATCAAACAGATCCACATCTTAACTCCAT-CGAATGGCCCATATTTGAGAAACTCACAGGTTTTACTAGTGTGATGTAATAAAACTATCCTAGAGAAGTCAATATATTCTCCTTCTCATGATTATCTAGGTTTGCAAACATGTTCAAGCCATATGAGAGGGATTTTTATTTCATACACCCAAAAAAACAGTTTTATGGCAGGCTTTGGTACTTAGATTGAGTAGTTTAATAT----------------ATAACAAAGATA-----------------------------------------AAATA i canFam3.chr18 I 1236 C 0 e ponAbe2.chrUn 5688366 5219 + 72422247 I a score=289955.000000 s hg38.chr1_KI270765v1_alt 134920 132 + 185285 tcacagagagtattacaaacacctagattgtacagcctaccac--gtttaggttatatggtatagcctctttctcccaggctacaaatctgtgtactacattactgtactgaatactgcaggcaataagaacac s panTro4.chr1_GL389091_random 157061 132 + 179278 tcacagagaatattacgaacacctagattgtacagcctaccac--gtttaggttatatggtatagcctctttctcccaggctataaatctgtgtactccattactctactgaatactgcaggcaataagaacac i panTro4.chr1_GL389091_random C 0 C 0 s nomLeu3.chr17 44143774 132 - 99891981 tcagagagaatattacaaacacctagattgtacagcctaccac--gtctaggttatatggtatagcctctctctcctaggctacaaacctgcatactacattactgtactgaatactgctggcaattagaacac i nomLeu3.chr17 C 0 C 0 s rheMac3.chr3 124568309 134 - 198365852 tcagagagaatattacaaacacgtagattgtacagcctaccacatgtctaggtgatatggtatagcctccctctcctaggctacaaacctgtgtactacattactgtactaaatgctgcaggcaattagaatac i rheMac3.chr3 C 0 C 0 s macFas5.chr3 125019670 134 - 192294377 tcagagagaatattacaaacacgtagattgtacagcctaccacatgtctaggtgatatggtatagcctccctctcctaggctacaaacctgtgtactacattactgtactaaatgctgcaggcaattagaatac i macFas5.chr3 C 0 C 0 s papAnu2.chr3 122282136 134 - 180432695 TCAGAGAGAATATTACAAACACGTAGATTGTACAGTCTACCACATGTCTAGGTGATATGGTATAGCCTCCCTCTCCTAGGCCACAAACCTGTGTACTACATTACTGTACTAAATGCTGCAGGCAATTAGAATAC i papAnu2.chr3 C 0 C 0 s chlSab2.chr21 121538169 134 - 127223203 tcagagagaatattacaaacacctagattgtacagcctaacacatgtctaggtgatgtggtatagcctccctctcctaggctacaaacctgtgtagtacattactgtactaaatgctgcaggcaattagaatac i chlSab2.chr21 C 0 C 0 s calJac3.chr8 20081274 132 + 128169293 -cagagagaatattacaagcacctagattgtacagcccaccacatgtctaggttatgtggtatgccccatcgctcctaggctacaaacctgtg-actacattactctactgaatactgcaggcaattagaacac i calJac3.chr8 C 0 C 0 e ponAbe2.chrUn 5688366 5219 + 72422247 I e canFam3.chr18 4103082 0 + 55844845 C a score=515200.000000 s hg38.chr1_KI270765v1_alt 135052 289 + 185285 agtggtaagaggttatgtatctaaacataattaaacgtagaaaagtatgtaaaaatatctattataaactcatgggaccacttttgtatatgtaatccatctttgactaaaatgttattatgcatgacatgactC--TATGACAAAAATAAAATAAC-----ACATTGTAAAAAAATATACAC--AGGTATCAAACATA-------TTAATATTGT-AAAAATAAAAATATTTATTCAGTGTAAGAATTTGTAATGATCACAAAATGTTCACAGCTTATATTTTAGTACAGTTTCAAATGCCTAGT s panTro4.chr1_GL389091_random 157193 284 + 179278 agtggtaagaggttatgtatctaaacatacttaaacgtagaaaagtatgtaaaaatatctattataatctcatgggaccacttttgtatatgtaatccatctttgactaaaatgttattatgcatgacACGACTC--TATGACAAAAATAAAATAAC-----ACATTGTAAAAAA-TGTACAC--AAGTATCAAACat---------taatattgt-aaaaataaaaatatttattCAGTGTAAGAATTTGTAATGATCACAAAATGTTCACAGCTTATATTTTAGTA--GTTTCAAATGCCTAGT i panTro4.chr1_GL389091_random C 0 C 0 s nomLeu3.chr17 44143906 293 - 99891981 agtggtaagagtttatgtatctgaacatatttaaatgtagaaaagtatgtaaaaatatgtattataatctcatgggaccacttttgtatatgtaatccatctttgactgaaatgttattatgcatgacatgacCCTGTATGACAAAAATAAAATAAC-----AAATAGTAAAAAT-TGTACACATATGTATTGAACATATTA--ATTTAATATTAT-AAAAATAAAAA----TATTCAGCATAAGAATTTATAATGATCACAAAATGTTCACAGCTTATATTTTAGTAGAGTTTCATATGCCTAGT i nomLeu3.chr17 C 0 C 0 s rheMac3.chr3 124568443 277 - 198365852 aatggtaagagtttatgtatctaaacacatttaa---tagaaaagtatgtaaaactatgtattataatctcatgggatcacttttgtatatgtattctatctttg----aaatgttattatgcacgacatgactCTATACGACAAAAATAAAATAAT---------AGTAAAAAA-TGTACACATATGTATCAAACata-------ttaatattat-aaaaatataaa----tattCAGTGTAAGAACTTATAATGATCACAAAATGTTCACAACTTATATTTTAGTAGGGTTTTAAATGCCTAGT i rheMac3.chr3 C 0 M 1659 s macFas5.chr3 125019804 281 - 192294377 aatggtaagagtttatgtatctaaacacatttaa---tagaaaagtatgtaaaactatgtattataatctcatgggatcacttttgtatatgtattctatctttg----aaatgttattatgcacgacatgactCTATACGACAAAAATAAAATAAT---------AGTAAAAAA-TGTACACATATGTATCAAACATA-------TTAATATTAT-AAAAATATAAATATTTATTCAGTGTAAGAACTTATAATGATCACAAAATGTTCACAACTTATATTTTAGTAGGGTTTTAAATGCCTAGT i macFas5.chr3 C 0 C 0 s papAnu2.chr3 122282270 280 - 180432695 AATGGTAAGAGTTTATGTATCTAAAAACATTTAA---TAGAAAAGTATGTAAAACTATGTATTATAATCTCATGGGATCACTTTTGTATATGTATTCTATCTTTG----AAATGTTATTATGCACGACATGACTctatatgacaaaaataaaataat---------agtaaaaaa-tgtacac--atgtatcaaacata-------ttaatattataaaaaatataaatatttattcagtgtaaGAACTTATAATGATCACAAAATGTTCACAACTTATATTTTAGTAGGGTTTTAAATGCCTAGT i papAnu2.chr3 C 0 C 0 s chlSab2.chr21 121538303 282 - 127223203 aatggtaagggtttatgtatctaaacacatttaa---tagaaaagtatgtaaaactatgtattataatctcataggatcacttttgtatatgtattccatctttg----aaatgttattatgcacgatatgactCTATATGACAAAAATAAAATAAT-----AAACAGTAAAAAA-TGTACACATATGTATCAAACATA-------TTAATATTATAAAAAATATAAA----TATTCAGTGTAAGAACTTATAATGATCACAAAATGCTCACAACTTATATTTTAGTAGGGTTTTAAATGCCTAGT i chlSab2.chr21 C 0 C 0 s calJac3.chr8 20081406 289 + 128169293 aatggtaagagtttgtgtatctaagcatatttaaacatggaaaagaatgtaaaaatatctgttataatacc---------tttatatatatgtagtccatctttgacc-taatgttattatgcacgacatgactCTGTATGACaaaaataaaataaaataataaataGTGAAAAC-TGTATACACATGTGTCAAACatattatcaattaatatcat-aaaaataaaaatatttattCAGT---AGAATTAATAATGATCCTAAAATGTTCACAACTTACACTTTAGTC--GTTTTAAATGCTTAGT i calJac3.chr8 C 0 C 0 s canFam3.chr18 4103082 144 + 55844845 AATAGTGAAAGCACATGCACCTACA----------------------------------TATTATGG------------------------------------------ATTTATTACTAT--------------------ACAAATAAAAATTAAT-----------------A-TTTACCC---AGTGCCAGaattt------------------ataaacaaaaa---------------------taaaataatcacaaaat------aaattgtatattattaGGTTATTTAAAGTTCAGC i canFam3.chr18 C 0 C 0 e ponAbe2.chrUn 5688366 5219 + 72422247 I a score=884196.000000 s hg38.chr1_KI270765v1_alt 135341 549 + 185285 GCAATTGCTATTTATTTCTGTGTGTATTTTAAACATGCATATAATAAATATTTTTCAGGTTCAACAATATATATC--AATCCAACTGGCTCTTATA-----AATATTAGTTAACATC--AATTGGTAAATTCATA--------------TATATATATACACAC----ACGTGACTC----Agt----ctgtatgcgtgtatgtgtgtgtaaatgtaactg----------------------tatgtgtgtgtaaatgtaactgGATGCATCCTAATATTTACCCTTACCTACAAGATTTCCAAGACTCATTTATTCTCTTTAAATG--GTGTGCCTTGAAAG-ATTTACCAAAT-AAAACCGCAATCGTGGAATATATCA-----------------------AGATGTTATTAAATTCATCTTGTGCACATAATT---GTTTCTTTAAATTT--ATGTTTCTTGCAAAACTTG---CGGTAATGCTCATGCACAAAATAATTTTCTAAATAAAAAATAAAAACATTTT-CTCAGTCATTAATTCTTAAAAA---TTATTTCTCCCCAGtaattaatgtgaattaattcttaattcttaattaTAGAATAATGTTGCCCTTCAGAGTTCTGAATCTTTTGCAC s panTro4.chr1_GL389091_random 157477 525 + 179278 GCAATTGCTATTTATTTCTGTGTGTATTTTAAACATGTATATAATACATATTTTTCAGGTTCAACAATATATATC--AATTCAACTGCCTCTTATA-----AATATTAGTTAACATC--AATTAGTAAATTCATA--------------TATATATATACACAC------GTGAATC----AGT----CTGTATGCATGTATGTGTGTGTAAATGTAACTG--------------------------------------------GATGCATCCTAACATTTACCCTTATCTACAAGATTTCCAAGATTCATTTATTATCTTTAAATG--GTGTGCATTTAAAG-ATTTACCAAAT-AAAACCGCAATCGTGGAAAATATCA-----------------------AGATGTTATTAAATTCATCTTGTGCACATAATT---GTTTCCTTAAATTT--ATGTTTCTTGCAAAACTTG---CGGTAATGCTCATGTACaaaataattttctaaataaaaaataaaaaCATTTT-CTCAGTCATTAATTCTTAATAA---TTATTTCTCCCCAATAATTAATGTGAATTAATTCTTAATTCTTAATAATAGAATAATGTTGCCCTTCAGAGTTCTGAATCTTTTGCAC i panTro4.chr1_GL389091_random C 0 C 0 s nomLeu3.chr17 44144199 558 - 99891981 TTAATTACTATTTATTCCTTTGTGTATTTTAAACATGTATATAATAAATATTTTTCAGGTTAAACAATATATATC--AAACCTACTGGCTCTTATAAATATAATATTAGTTAAAATC--AATTAGTAAATTCAtg--------------tatatatatacatat------gtgtatcagtgagt----gtgtgtgcatgtatgtgggtgtaaacgtaattg----------------------tgtgtgtgtgtaaatgtAATTGGATGCATCCTAATATTTACCCTTACCTACAGGATTTCCAAGATTCATTTA---TCTTTAGATGAAATGTGCATTTAAAG-ATTTACCAAAT-AAAATTATAATAGTGGAAAATATCA-----------------------AGATGTTATTAAATTCATCTTGTGCACATAATTTTGTTTCCTTTAAATTT--ATGTTTCTTGAAAAACTTG---CAGTAATGCTCATGCACAAAATAATTTTCTAAATAAAAAATAAAAACATTTT-CTCAGTCATTATTTCTTAATAA---TTATTTCTCCCCAATAATTAATGTGAATTAATCCTTAATTCTTAGTTACAGAATAATGTTGCCCTTCAGAGTTCTGAAACTTTTGCAT i nomLeu3.chr17 C 0 C 0 s macFas5.chr3 125020085 587 - 192294377 TTAATTACTATTTATTTCTTTGTGTATATTAAACATGTATATAATAAATATTTTTCAGGTTCAACAATATATATC--AAACCTACTGGCTTTTATAAATATAATATTAGTTGAAATC--AATTAGTAAATTCATG--------------TATATAGATACACAC----ACgtgtatc----agtgagtgtgtgtgcatgtatgtgtgtgtaaatgtaattgtatgtgtgcgtaaatgtaattgtatgtgtgtgtAAATGTAATTGGATGCCTCCTAATATTTACCCTTACCTACAAGATTTCCAAGATTCATTTATTATCTTTAGATG--ATGTGCATATAAAG-ATTTACCAAATAAAAACTATAATAGTGGAAAATATCA-----------------------AGATTTTATTAAATTCATCTTGTGCACATAATTTTGTTTCTTTTAAATTT--ATGTTTCTTGCAAAACTTG---CAGTAATGCTCATGCACAAAATAATTTTCTAAATAGAAAATAAAAACATTTT-CTCAGTCATTAATTCTTAGTAATTCTTTTTTCTCCCCAATGACTAATGTGAATTAATTCTTAATTCTTAATTATAGAATAATGTTGCCCTTCAGAGTTCTGAACGTTTTGCGT i macFas5.chr3 C 0 C 0 s papAnu2.chr3 122282550 585 - 180432695 TtaattactatttatttctttgtgtattttaaacatgtatataataaatatttttcaggttCAACAATATATATC--AAACCTACTGGCTTTTATAAATATACTATTAGTTGAAATC--AATTAGTAAATTCatg--------------tatatagatacacac----acatgtatc----agtga--gtgtgtgcatgtatgtgtgtgtaaatgtaattgtatgtgtgcgtaaatgtaattgtatgtgtgtgtaaatgtaatTGGATGCCTCCTAATATTTACCCTTACCTACAAGATTTCCAGGATTCATTTATTATCTTTAGATG--ATGTGCATATAAAG-ATTTaccaaataaaaactataatagtGGAAAATATCA-----------------------AGATGTTATTAAATTCATCTTGTGCacataattttgtttcctttaaattt--atgtttcttgCAAAACTTG---CAGTAATGCTCAtgcacaaaataattttctaaatagaaaataaaaacatttt-ctcagtCATTAATTCTTAGTAATTCTTATTTCTCCCCAATGACTAATGTGAATTAATTCTTAATTCTTAATTATAGAATAATGTTGCCCTTCAGAGTTCTGAACGTTTTGCGT i papAnu2.chr3 C 0 C 0 s chlSab2.chr21 121538585 582 - 127223203 TTAATTACTATTT-TTTTTGTGTGTATTTTAAAAATGTATATAATAAATATTTTTCAGGTTCAACAATATATAGC--AAACCTACTGGCTTTTATAAATATAATATTAGTTGAAATC--AATTAGTAAATTCATG--------------TATATAGATACACAC----ACgtgtatc----agt----gtgtgtgcatgtatgtgtgtgtaaatgtaattgtatgtgtgtgtaaatgtaattgtatgtgtgtgtAAATGTAATTGGATGCCTCCTAATATTTACCCTTACCTACAAGATTTCCAAGATTCATTTATTATCTTTAGATG--ATGTGCATATAAAG-ATTTACCAAATAAAAATTATAATAGTGGAAAATATCA-----------------------AGATGTTATTAAATTCATCTTGTGCACATAATTTTGTTTCCTTTAAATTT--ATGTTTCTTGCAAAACTTG---CAGTAATGCTCATGCACAAAATAATTTTCTAAATAGAAAATAAAAACATTTT-CTCAGTCATTAATTCTTCGTAATTCTTATTTCTCCCCAATGACTAATGTGAATTAATTCTTAATTCTTAATTATAGAATAATGTTGCCCTTCAGAGTTCTGAACCTTTTGCAT i chlSab2.chr21 C 0 C 0 s calJac3.chr8 20081695 510 + 128169293 TTAATTATAA--CATTTCTTTGTGTATTTTAAACATGCATATAATAAATGTTTTTCAGGTTCAACAATATGTATCATAAACCTACGGGCTCTTATAAATATATAATTAGTTGAAATC--AATTAGTAAATTCatgtgtgtgtgtgtgtatatatatatgcacacatacatgtatatC----AGTCAGAGTGTGTGCATGTATGTGTGTGTAAATGTAATTG--------------------------------------------TATGCACTCTAATATTT-CCCTTACCTACAAGACTTCTGACATTCATTTATTATCTATAGATG--ATGTGCATATAAAGCATTTATCAAAT-AAAACTCTAATAGTGAAAAATATCA-----------------------AGATTTTATTAAATTCATCTTGGGCATGTGGTT-TGTTTCCTTTAAATTT--ATGTTTTTGACAAAACTTG---CAGAAATGCCCATGCACAAAATGATTTTCTAAATAAAAAATAAAAATACTTT-CTCAGTCACTAATTCTTAATAA----------------------------------------ATT--------TAGCATAATGTTGCCC-TCAGACTTCTGAAATTTTTGGAT i calJac3.chr8 C 0 C 0 s canFam3.chr18 4103226 516 + 55844845 ttaattatgatttatttttt--tatatgataaatattGACATAACATATATTTTACATGTTGAACAACATGTATCATAAACTTTTGGGCTCTTCt------aatattaattaaatttaaaaattgtatatttata--------------tataaaCAAATAGTC-TTTATGAGGATA----TGC----ATATGTGCATGTGTGCGTGTGT--ATGTAAAAG-------------------------------------GTAAGTGACTATATTCTAACAGTTACCCTTGACTATGAGATTCTATATGTTCATTTAATATCTTCAGATC--ATGTGAGTATATAG-ATTTACCTAAT-AAATATATGATAGTGGAAAATATCAAATATCACTAAATATTAAATATCAAGTATTATTAAACTAACTCTATACATG----TCTGCTTTTTTTTAATTTAGACTTTTCTTGCAAAACCTGCTACAGTAATAGCTATACACAAATTAATCTTCCAGATAAAAAATAAACATATTTTCCTCAATCACTAACCTTTAATTA----------------------------------------GTTC-----------ATAATGCTTCCCTTCATGTTTCTGAAACTTGTACAT i canFam3.chr18 C 0 C 0 e rheMac3.chr3 124568720 1659 - 198365852 M e ponAbe2.chrUn 5688366 5219 + 72422247 I a score=23189.000000 s hg38.chr1_KI270765v1_alt 135890 20 + 185285 GTTGTATACATTTCACTGAC s panTro4.chr1_GL389091_random 158002 20 + 179278 GTTGTATACATTTCACTAAC i panTro4.chr1_GL389091_random C 0 C 0 s macFas5.chr3 125020672 20 - 192294377 GTTGTATACATTTTGCTAAC i macFas5.chr3 C 0 C 0 s papAnu2.chr3 122283135 20 - 180432695 GTTGTATACATTTTACTAAC i papAnu2.chr3 C 0 C 0 s chlSab2.chr21 121539167 20 - 127223203 GTTGTATACATTTTACTAAC i chlSab2.chr21 C 0 C 0 s calJac3.chr8 20082205 20 + 128169293 GTTGTATACATATTTCTAAC i calJac3.chr8 C 0 I 70 s canFam3.chr18 4103742 18 + 55844845 -TTGTGAGCATATTATGAT- i canFam3.chr18 C 0 C 0 e rheMac3.chr3 124568720 1659 - 198365852 M e ponAbe2.chrUn 5688366 5219 + 72422247 I e nomLeu3.chr17 44144757 0 - 99891981 C a score=13179.000000 s hg38.chr1_KI270765v1_alt 135910 73 + 185285 TGGAACATCTTCTG-GAATATTGGCATTAATTAATCTCACTCAGCAATTAATGATTTCAAAGAAATTAAATACC s panTro4.chr1_GL389091_random 158022 73 + 179278 TAGAACATCTTCTG-GAATATTGGCATTAATTAATGTCACTCAGCAATTAATGATTTCAAAGAAATTAAATACC i panTro4.chr1_GL389091_random C 0 C 0 s canFam3.chr18 4103760 74 + 55844845 TAATTTTTTTTCTGAAAATATTGACATTAATTAATGTAATCCAATAATTATTGACTTTAAAAAGATTAAACACC i canFam3.chr18 C 0 C 0 e calJac3.chr8 20082225 70 + 128169293 I e chlSab2.chr21 121539187 0 - 127223203 C e rheMac3.chr3 124568720 1659 - 198365852 M e ponAbe2.chrUn 5688366 5219 + 72422247 I e papAnu2.chr3 122283155 0 - 180432695 C e macFas5.chr3 125020692 0 - 192294377 C e nomLeu3.chr17 44144757 0 - 99891981 C a score=47132.000000 s hg38.chr1_KI270765v1_alt 135983 130 + 185285 ATTCATATTCTGAATCACAAGGGTACTTTGGCACCTAATTTAATCAAGCTCTTTGTATCATCATCTACAGTTTAATTACTTAACAAAC--ATTTCTTTGTGTGAGAAAGATTGAGCAGGTTATTGTGCTTTT s panTro4.chr1_GL389091_random 158095 130 + 179278 ATTCATATTCTGAATCACAAGGGTACTTTGGCATCTAATTTAATCAAGCTCTTTGTATCATCATCTACAGTTTAATTACTTAACAAAC--ATTTCTCTGTGTGAGAAAGATTGAGCAGGTTATTGTGCTTTT i panTro4.chr1_GL389091_random C 0 C 0 s calJac3.chr8 20082295 126 + 128169293 ATTTATATTCTGAATCACAAGGGTACATTGGCTTCTAATTTAATCGAATTCTTTATACAATCATCTACACT----TTACCTAACAAAC--GTTTCTTTGTGTGAGAAAGATTGAGCAGGTTATTGTGTTTTT i calJac3.chr8 I 70 T 196 s canFam3.chr18 4103834 131 + 55844845 ACATGTATCCTGAATCAC-AGTGTGCTTTGGGTTCTGATTTAATCAAATTCATCATGTAATCATCAATACTTTAATCACTAAAAAAACATATTTCTTTGTGTGGGAAATATCCAGCAGATCGCTGTCCTtct i canFam3.chr18 C 0 C 0 e chlSab2.chr21 121539187 0 - 127223203 C e rheMac3.chr3 124568720 1659 - 198365852 M e ponAbe2.chrUn 5688366 5219 + 72422247 I e papAnu2.chr3 122283155 0 - 180432695 C e macFas5.chr3 125020692 0 - 192294377 C e nomLeu3.chr17 44144757 0 - 99891981 C a score=300.000000 s hg38.chr1_KI270765v1_alt 136113 1 + 185285 C s panTro4.chr1_GL389091_random 158225 1 + 179278 C i panTro4.chr1_GL389091_random C 0 C 0 s canFam3.chr18 4103965 1 + 55844845 c i canFam3.chr18 C 0 C 0 e calJac3.chr8 20082421 196 + 128169293 T e chlSab2.chr21 121539187 0 - 127223203 C e rheMac3.chr3 124568720 1659 - 198365852 M e ponAbe2.chrUn 5688366 5219 + 72422247 I e papAnu2.chr3 122283155 0 - 180432695 C e macFas5.chr3 125020692 0 - 192294377 C e nomLeu3.chr17 44144757 0 - 99891981 C a score=2843.000000 s hg38.chr1_KI270765v1_alt 136114 17 + 185285 GTTGTATACATTTCACT-- s panTro4.chr1_GL389091_random 158226 17 + 179278 ATTGTATACATTTCACT-- i panTro4.chr1_GL389091_random C 0 C 0 s nomLeu3.chr17 44144757 17 - 99891981 GTTGTATACATTTTACT-- i nomLeu3.chr17 C 0 C 0 s canFam3.chr18 4103966 17 + 55844845 --tctctctctctctctct i canFam3.chr18 C 0 T 216 e calJac3.chr8 20082421 196 + 128169293 T e chlSab2.chr21 121539187 0 - 127223203 C e rheMac3.chr3 124568720 1659 - 198365852 M e ponAbe2.chrUn 5688366 5219 + 72422247 I e papAnu2.chr3 122283155 0 - 180432695 C e macFas5.chr3 125020692 0 - 192294377 C a score=276.000000 s hg38.chr1_KI270765v1_alt 136131 3 + 185285 AAG s panTro4.chr1_GL389091_random 158243 3 + 179278 AAC i panTro4.chr1_GL389091_random C 0 C 0 s nomLeu3.chr17 44144774 3 - 99891981 AAT i nomLeu3.chr17 C 0 C 0 e calJac3.chr8 20082421 196 + 128169293 T e chlSab2.chr21 121539187 0 - 127223203 C e rheMac3.chr3 124568720 1659 - 198365852 M e ponAbe2.chrUn 5688366 5219 + 72422247 I e canFam3.chr18 4103983 216 + 55844845 T e papAnu2.chr3 122283155 0 - 180432695 C e macFas5.chr3 125020692 0 - 192294377 C a score=13755.000000 s hg38.chr1_KI270765v1_alt 136134 7 + 185285 TAGAACA s panTro4.chr1_GL389091_random 158246 7 + 179278 TAGAACA i panTro4.chr1_GL389091_random C 0 C 0 s nomLeu3.chr17 44144777 7 - 99891981 TAGAACA i nomLeu3.chr17 C 0 C 0 s macFas5.chr3 125020692 7 - 192294377 TAGAACA i macFas5.chr3 C 0 C 0 s papAnu2.chr3 122283155 7 - 180432695 TAGAACA i papAnu2.chr3 C 0 C 0 s chlSab2.chr21 121539187 7 - 127223203 TAGAACA i chlSab2.chr21 C 0 C 0 s calJac3.chr8 20082225 7 + 128169293 TAGAACA i calJac3.chr8 T 196 C 0 e rheMac3.chr3 124568720 1659 - 198365852 M e ponAbe2.chrUn 5688366 5219 + 72422247 I e canFam3.chr18 4103983 216 + 55844845 T a score=229979.000000 s hg38.chr1_KI270765v1_alt 136141 114 + 185285 TCTTCTG-GAATATTGGCATTAATTAATCTCACTCAGCAATTAATGATTTCAAAGAAATTAAATACCATTCATATTCTGAATCACAAGGGTACTTTGGCATCTAATTTAATCAAG s panTro4.chr1_GL389091_random 158253 114 + 179278 TCTTCTG-GAATATTGGCATTAATTAATGTCACTCAGCAATTAATGATTTCAAAGAAATTAAATACCATTCATATTCTGAATCACAAGGGTACTTTGGCATCTAATTTAATCAAG i panTro4.chr1_GL389091_random C 0 C 0 s nomLeu3.chr17 44144784 114 - 99891981 ACTTCTG-AAATATTGGCATTAATTAATGTCAGTCAGCAATTATTGATTTCAAAGAAATTAAATACCATTCATATTCTGAATCACAAGGGTACTTTGACATCTAATTTAATCAAG i nomLeu3.chr17 C 0 C 0 s macFas5.chr3 125020699 114 - 192294377 ACTCCTG-AAATATTGGCATTAATTAATGTCACTCAGCAATTATTGATTTCAAATAAATTAAATGTCATTCATATTTTGAATCACAAGGGTACTTTGGCATCTAATTTAATCAGA i macFas5.chr3 C 0 C 0 s papAnu2.chr3 122283162 114 - 180432695 ACTCCTG-AAATATTGGCATTAATTAATGTCACTCAGCAATTAttgatttcaaataaattaaatgtcaTTCATATTTTGAATCACAAGGGTACTTTGGCATCTAATTTAATCAGA i papAnu2.chr3 C 0 C 0 s chlSab2.chr21 121539194 114 - 127223203 ACTCCTG-AAATACTGGCATTAATTAATGTCACTCAGCAATTATTGATTTCAAATAAATTAAATGTCATTCATATTTTGAATCACAAAGGTACTTTGGCATCTAATTTAATCAGA i chlSab2.chr21 C 0 C 0 s calJac3.chr8 20082232 111 + 128169293 ACTTATA-AAATATTGGCATTAATTAATGTCGCTCAGCAATTATTGATTTCAAAGAAATTAAAT---ATTTATATTCTGAATCACAAGGGTACATTGGCTTCTAATTTAATCGAA i calJac3.chr8 C 0 C 0 s canFam3.chr18 4103767 114 + 55844845 TTTTCTGAAAATATTGACATTAATTAATGTAATCCAATAATTATTGACTTTAAAAAGATTAAACACCACATGTATCCTGAATCAC-AGTGTGCTTTGGGTTCTGATTTAATCAAA i canFam3.chr18 T 216 I 102 e rheMac3.chr3 124568720 1659 - 198365852 M e ponAbe2.chrUn 5688366 5219 + 72422247 I a score=570160.000000 s hg38.chr1_KI270765v1_alt 136255 331 + 185285 CTCTTTGTATCAACATCTACACTTTAATTACTTAACAAACATTTCTCTGTGTGAGAAAGATTGAGCAGGTTATTGTGCTTTTTTATGATGC-A-ACTTTTGCTTAATCTAGAGATAGG-CAATGCTCCCTATAAGGGACAAAGAGAAAAATGAAAGAGCAATAGAGATGTGACAGGCATGGAAAAAGACAATACATTTATAAAACAAATAGGGCCACAGATGATGATAATGGGGATCAAATCTTGAGA---TACTGACTCAGTTTATAACCGCACTGTACAATAGAGCAAAT------CATTTGTTAA-TTATTTTACAAATGGAATC----TAATTTAACTAAGATG s panTro4.chr1_GL389091_random 158367 331 + 179278 CTCTTTGTATCATCATCTACACTTCAATTACTTAACAAACATTTCTCTGTGTGAGAAAGATTGAGCAGGTTATTGTGCTTTTTTATGATGC-A-ACTTTTGCTTAATCTAGATATAGG-CAATGCTCCCTATAAGGGACAAAGAGAAAAATGAAAGAGCAATAGAGATGTGACAGGCATGGAAAAAGACAATACATTTATCAAACAAATAGGGCCACAGATGATGATAATGGGGATCAAATCTTGAGA---TACTGACTCAGTTTATAACCGCACTGTACAATAGAGCAAAT------CATTTGTTAA-TTATTTTACAAATGGAATC----TAATTTAACAAAGATG i panTro4.chr1_GL389091_random C 0 C 0 s nomLeu3.chr17 44144898 335 - 99891981 CTCTTTGTATCATCATCTACACTTCAATTACTTAACAAACATTTCTCTGTGTGAGAAAGATTGAGCAGGTTATTGTGCTTTCTTAAGACGC-A-ACTTTTGCTTAATCTAGAGATAGG-CAATGCTCCCTATAAGGGACAAAGAGGAAAATGAATGAGCAATAGAGATGTGACAGGCATGGAAAAAGACAATACATTTATAAAACAAATAGGGCCACAGATGACGATAATGGGGATCAAATCTTGAGA---TACTGACTCAGTTTATAACCACACTGTATAATAGAGCAGAT------CATTTGTTAA-TTTTTTTACAAATGGAAACACCTTGATTTAATTAAGATG i nomLeu3.chr17 C 0 C 0 s macFas5.chr3 125020813 338 - 192294377 CTCTTTATAACTTCATCTACACTTTAATTACTTAACAAACATTTCTGTGTGTGAGAAAGATTGAGCAGGTTATTGTGCTTTTTTAAGAAGC-A-ACTTTTGCTTAATCTAGAGATAGG-CAATGTTCCTTATAAGGGACAAAGAGAAAAATGAATGAGCAATAGTGATGTGACTGACATGGAGAAAGACAATACACTTAATAAACAAGTAGGGCCATAGATTACGATAATGGGGATCAAATCTTGAGATACTACTGACTCAGTTTATAACCTCATTGTATAATAGAGCAAAT------CATTTGTGAA-TTTTTTTACAAATGGAAGCACCTTAATTTAATTAAGATG i macFas5.chr3 C 0 C 0 s papAnu2.chr3 122283276 335 - 180432695 CTCTTTATAACTTCATCTACACTTTAATTACTTAACAAACATTTCTCTGTGTGAGAAAGATTGAGCAGGTTATTGTGCTTTTTTAAGAAGC-A-ACTTTTGCTTAATCTAGAGATAGG-CAATGCTCCTTATAagggacaaagagaaaaatgaatgagcaATAGTGAtgtgaccaacatggaaaaagacaatatatttattaaacaaataggGCCATAGATTACGATAATGGGGATCAAATCTTGAGA---TACTGACTCAGTTTATAACCTCATTGTATAATAGAGCAAAT------CGTTTGTGAA-tttttttACAAATGGAAACACCTTAATTTAATTAAGATG i papAnu2.chr3 C 0 C 0 s chlSab2.chr21 121539308 335 - 127223203 CTCTTCATAACTTCATCTACACTTTAATTACTTAACAAACATTTCTCTGTGTAAGAAAGATTGAGCAGGTTATTGTGCCTTTTTAAGAAGC-A-ACTTTTGCTTAATCTAGAGATAGG-CAATGCTCCTTATAAGGGACAAAGAGAAAAATGAATGAGCAATAGTGATGTGACCAACATGGAAAAAGACAATATATTTATTAAACAAATAGGGCCATAGATTACGATAATGGGGATCAAATCTTGAGA---TACTGACTCAGTTTATAACCTCACTGTATAACAGAGCAAAT------CATTTGTGAA-TTTTTTTACAAATGGAAACACCTTAATTTAATTAAGATG i chlSab2.chr21 C 0 C 0 s calJac3.chr8 20082343 328 + 128169293 TTCTTTATACAATCATCTACACT----TTACCTAACAAACGTTTCTTTGTGTGAGAAAGATTGAGCAGGTTATTGTGTTTTTTTAAGACACAA-ACTTTTGCTCAATCTAGAGATAGC-TAATGCTTCCTATAAGGAACAATGAGAAAAATGAATTAGCA--AGAGATGTGACAGAGGTAGAGAAA---AATACATTTATAAAACAAAGAGGGCCATAGATGACGATAATGCATTTCAAATCTTGAGC---TATTGGCTCAGTTTATAACCTCACTCTAAGATAAGGCAAAT------CAATTGTGAATTTTTTTTATGAATGGAAACAGGTTAATTTAATTAAGATG i calJac3.chr8 C 0 I 331 s canFam3.chr18 4103983 276 + 55844845 ctctTT-----------------------------------TTTTTTT---------------------TTTTTG-GTTTCCCCATAATAT-ATACCATTGATTAATGCAAAGACAGGTTAATGTCCAGAGTAAGGGAAAATAAGAGAAATAAATGAA----GGCAGTAAGATAGGGATAAGAAAACACAATAAATTTATAAAACAAGTAGGGCCATCTATCGTGATAATGAGGATCAAATCATGAGA---TATTGGTCAGACTTGT------ACTGTGAAATAGAGTGGATGTTATAAAATTGTGGATTTTTTTTATAAATGTAAACACCCCAGTTTAATTAA-ATG i canFam3.chr18 I 102 C 0 e rheMac3.chr3 124568720 1659 - 198365852 M e ponAbe2.chrUn 5688366 5219 + 72422247 I a score=241724.000000 s hg38.chr1_KI270765v1_alt 136586 150 + 185285 AATACAGTGTTTTAAACAAGGCAGGTCATCTTAAAATAAAATAG-TGGGA-AAAGTGATAAAACCAATGTAAAAATCATAAACATTTTATAAAGAA-TTTTTGTCATGTAATTTAATATTTTTC--TTTATTTAAAATCACCCAAATCAAAATAA s panTro4.chr1_GL389091_random 158698 143 + 179278 AATA--GTGTTTTAAACAAGGCAGGTCATCTTAAAATA-----G-TGGGA-AAAGTGATAAAACCAATGTAAAAATCATAAACATTTTATAAAGAA-TTTTTGTCATGtaatttaatatttttc--tttatttaaaatCATCCAAATCAAAATAA i panTro4.chr1_GL389091_random C 0 C 0 s nomLeu3.chr17 44145233 153 - 99891981 AATACAGTATTTTAAACAAGGCAGGTCATCTTAAAATAAAATAG-TAGAATAAAGTGATAAAACCAATGTAAAAATCATAAACATTTTATAAAGAACTTTTTGTCATGTAATTTAATATTTTTTG-TTTATTTAAAATCACCCAAATCAAAATAA i nomLeu3.chr17 C 0 C 0 s macFas5.chr3 125021151 151 - 192294377 AATACAGTGTTTTAAACAAGACAGGTCAT-TTAAAATAAAATAA-TGGAATAAAATGATAAAACCAATGTAAAAATCATAAACATTTTATTAAAAACATTTTGTCACGTAATTTAATATATTTG--TTTATTTAAAATCACCCAAATCAAAATTA i macFas5.chr3 C 0 C 0 s papAnu2.chr3 122283611 151 - 180432695 AATACAGTGTTTTAAACAAGACaggtcat-ttaaaataaaataa-tggaataaagtgataaaaccaatgtaaaaatcataaacattttattaaaaacattttgtcatgtaatttaatatatttg--tttatttaaaatcacCCCATTCAAAATTA i papAnu2.chr3 C 0 C 0 s chlSab2.chr21 121539643 151 - 127223203 AATATAGTGTTTTAAACAAGACAGGTCAT-TTAAAATAAAATAA-TGGAATAAAGTGATAAAACCAATGTAAAAATCATAAACATTTTATTAAAAACATTTTGTCATGTAATTTAATATATTTG--TTTATTTAAAATCACCCAAATCAAAATTA i chlSab2.chr21 C 0 C 0 s calJac3.chr8 20083002 152 + 128169293 AATACAGTGTTTTAAACAAGGCAGACCATCTTAAAATAAAATAG-CAGAATGAATTAATAAAACCAATGTAAAAATCATAAACATTTCATAAATAACTTTTTGTCATGTAATTTAATATTTTTG--TTCATTTAAAATCATCCAAATCAAAATAA i calJac3.chr8 I 331 C 0 s canFam3.chr18 4104259 121 + 55844845 AACGAAATAATTTA---TCATCAGGTACCTTTAAAATGAAATAGTTGGTAAAAGATAATAAAACAA-------------------------------GTTTTTTCTTGGTATTTAACATTTATTATTTTATATAACATCATCCAAATTAAAGAAA i canFam3.chr18 C 0 I 1196 e rheMac3.chr3 124568720 1659 - 198365852 M e ponAbe2.chrUn 5688366 5219 + 72422247 I a score=12909.000000 s hg38.chr1_KI270765v1_alt 136736 8 + 185285 TTTTATCT s panTro4.chr1_GL389091_random 158841 8 + 179278 TTTTATCT i panTro4.chr1_GL389091_random C 0 C 0 s nomLeu3.chr17 44145386 8 - 99891981 TTTTATCT i nomLeu3.chr17 C 0 C 0 s macFas5.chr3 125021302 8 - 192294377 TTATATCT i macFas5.chr3 C 0 C 0 s papAnu2.chr3 122283762 8 - 180432695 TTATATCT i papAnu2.chr3 C 0 C 0 s chlSab2.chr21 121539794 8 - 127223203 TTATATCT i chlSab2.chr21 C 0 C 0 s calJac3.chr8 20083154 8 + 128169293 TTATATCT i calJac3.chr8 C 0 C 0 e rheMac3.chr3 124568720 1659 - 198365852 M e ponAbe2.chrUn 5688366 5219 + 72422247 I e canFam3.chr18 4104380 1196 + 55844845 I a score=88362.000000 s hg38.chr1_KI270765v1_alt 136744 40 + 185285 TAATTAACAAATAATCATCGGAAGTTAACTAATTTTTACT s panTro4.chr1_GL389091_random 158849 40 + 179278 TAATTAACAAATAATCATCAGAAGTTAACTAATTTTTACT i panTro4.chr1_GL389091_random C 0 C 0 s nomLeu3.chr17 44145394 40 - 99891981 TAATTAACAAATAATCATCAGAAGTTAACTAATTTTTACT i nomLeu3.chr17 C 0 C 0 s macFas5.chr3 125021310 40 - 192294377 TAATTAACAAATCATCATCAGAAGTTAACTAATTTTTACT i macFas5.chr3 C 0 C 0 s papAnu2.chr3 122283770 40 - 180432695 TAATTAACAAATCATCATCAGAAGTTAACTAATTTTTACT i papAnu2.chr3 C 0 C 0 s chlSab2.chr21 121539802 40 - 127223203 TAATTAACAAATCATCATCAGAAGTTAACTAATTTTTACT i chlSab2.chr21 C 0 C 0 s calJac3.chr8 20083162 40 + 128169293 TAATTAACAAATAATCATCAGAAGTTAACTAAtttttttt i calJac3.chr8 C 0 I 530 s canFam3.chr18 4105576 40 + 55844845 TAATTAACAAATGAATATAAAAAGTTAACTAATTTATGGT i canFam3.chr18 I 1196 C 0 e rheMac3.chr3 124568720 1659 - 198365852 M e ponAbe2.chrUn 5688366 5219 + 72422247 I a score=617622.000000 s hg38.chr1_KI270765v1_alt 136784 371 + 185285 TTATAATACTAGGTTTAAAAATTCTTCACTATA-TTTTTAATCATACATGCTTATACATAAAATAGACATAGGGTATATGT---TTACATGTTCACA---------------ATATTATATTGTAAT-TGTTCCTATGGATGTG----GTTTTTCAATAGA---ATTAATAAGTAC---TTTTAAAAAGTTTCAATTTCAATGATATATATGTTTGATTTTTCTTTGACAAAGCATACATATATTGATAGGTAAT-AATAAGAAAATCTTCTAAAGACATTACAGGAACATGAATAAGTAATTAAATCCTCAATAATTTGTAACGTTTTATGTAAGCGGAACACATTTAACTGAAAATTGCTTTTATATAATACTC-AAACGAGACTAAAAACATATTAACTA s panTro4.chr1_GL389091_random 158889 371 + 179278 TTATAATACTAGGTTTAAAAATTCTTCACTATA-TTTTTAATCATACATGCTTATACATAAAATAGACATAGGCTATATGT---TTACATGTTCACA---------------ATATTATATTGTAAT-TGTTCCTATGGATGTG----GTTTTTCAAAAGA---ATTAATAAGTAC---TTTTAAAAAGTTTCCATTTCAATGATATATATGTTTGATTTTTCTTTGACAAAGCATACGTATATTGATAGGTAAC-AATAAGAAAATCTTCTAAAGACATTACAGGAACATGAATAATTAATTAAATCCTCAATAATTTGTAATGTTTTATGTAAGCGGAAGACATTTAACTGAAAATTGCTTTTATATAATACTC-AAACGAGACTAAAAACATATTAACTA i panTro4.chr1_GL389091_random C 0 C 0 s nomLeu3.chr17 44145434 371 - 99891981 TCATAATACTAGGCTTAAAAATTCTTAACtata-tttttaatcatatatgcttatatataaaatagacataggatatatat---ttacctgttcaca---------------atattatattataAT-TGTTCCTATGGATGTG----GTTTTTCAATAGA---ATTAATAAGTAC---TTTTAAAAATTTTCAATTTCAATGATATATATGTTTGATTTTTCGTTGACAAAGCATACATATATTGATAGGTAAT-AATATGAAAATCTTCTAAAGACATTACAGGAATATGAAAATGTAATTAAATACTCACTAATTTGTACTGTTTTATGTAACCAGAACACATTTAACTGAAAATTGTTTTTATATAATATTC-AAATGAGACTAAAAACATATTAACTA i nomLeu3.chr17 C 0 C 0 s macFas5.chr3 125021350 367 - 192294377 TTGTAATACTAGATTTAAAAATTCTTTACTATA-TTTTTGATCATATATGCTTATATGTAAAATAGACATAGGATATATAT---TTACATGTTCACA---------------CTAGTATAGTGTATT-TGTTCCTATGGATGTG----GTTTTCAAATAAA---ATTCATAAGTAC---TTTTAAATATTTTCAATGTAAATGATATATATGTTTGGTTTGTCTTTGACAAAGCATACATATAGTGATAGGTAAT-AATATGAAAATCTTCTAAAGACATTACAGGAACATGAAAATGTAAC----TACTCACTAATTTGTAATGTTTTATGTAACAAGAACACATTTAACTGAAAATTACTTTTATGTAGTATTC-AAACGAAACTAAAAACGTATTAAGTA i macFas5.chr3 C 0 C 0 s papAnu2.chr3 122283810 367 - 180432695 TTGTAATActagatttaaaaattcttgacTATA-TTTTTGATCATATATGCTTATATGTAAAATAGACATaggatatatat---ttacatgttcaCA---------------CTAGTATATTGTATT-TGTTCCTATGGATGtg----gttttcaaataaa---attcataagtac---ttttaaatattttcaatgtaaATGATATATGTGTTTGGTTtgtctttgacaaagcatacatATATTGATAGGTAAT-AATATGAAAATCTTCTAAAGACATTACAGGAACATGAAAATGTAAC----TACTCACTAATTTGTAATGTTTTATGTAACAAGAACACATTTAACTGAAAATTACTTTTATGTAGTATTC-AAACGAGACTAAAAACATATTAACTA i papAnu2.chr3 C 0 C 0 s chlSab2.chr21 121539842 371 - 127223203 TTGTAATACTAGATTTAAAAATTCTTGACTATA-TTTTTGATCATATATGCTTATATGTAAAATAGACATAGGATATATAT---TTACATGTTCACA---------------CTAGTATATTGTATT-TGTTCCTATGGATGTG----GTTTTCAAATAAA---ATTCATAAGTAC---TTTTAAATATTTTCAATGTAAATGATACATGTGTTTGGTTTGTCTTTGACAAAGCATACATATATTGATAGGTAAT-AATATGAAAATCTTCTAAAGACATTACAGGAACATGAAAAGGTAACTAAATACTCACTAATTTGTAATGTTTTATGTAACAAGAACACATTTAACTGAAAATCACTTTTATGTAGTATTC-AAACGAGACTAAAAACATATTAACTA i chlSab2.chr21 C 0 C 0 s calJac3.chr8 20083732 365 + 128169293 TTTTAAAACTAGGTTTTAAAATTCTTAACGATA-TTTTAAATCATATATGCTTATATGTTAAATAGACATAGAATATAT-T---TTACGTGTTCACA---------------ATATTATATTGTAAT-TTATCTTATGAATGTGTTTTTTTTTTCAATAGA-------ATAAGTAC---TTTTAAA-ATTTCCAATTTAAATGATATATGTGTTTGGTTTTTCTTTGAGAAA------ATGTATTGATAGGTAATAAATGTAAAAATCTTTTGAAGACATTACGGGAACATGAAGATAAAATTAAATTTTCACTAATTTGCAAAGCTTTATATAATGAGGACACATTTAACTGAAAATTACTTTTATATAATGTTCAAAATGAGACTAAAAACATATTAACTA i calJac3.chr8 I 530 C 0 s canFam3.chr18 4105616 367 + 55844845 TTGTAGTAATAGATCTTAGCATGTGTAATTATACTCTTTCATTATA-ATACTCacatataaagtacatataaagtacatataaagtacatataCATATAAAGTAATTGATGTTTGGAACATCATAATCTATTTTTATGGGTATG----ATTTCATACAAAAGTCATTAATAAGTACATTATTTATTCATTTTCAATTTAAGTGGTG-------TTTTTTTGTTGTTGATGAAACAT-----------------GT-AATATGCAAATCTTTTGAAAATTTTACAGGCACATAACAATGTCATTAAACATTCACTAATTT-----TTTTAGTACAAGAAGGATACTTCTAACTGGATATT-TACTTAGGTTATATTCAAAATGAGACCTAAAACAAAGTAACTA i canFam3.chr18 C 0 I 25 e rheMac3.chr3 124568720 1659 - 198365852 M e ponAbe2.chrUn 5688366 5219 + 72422247 I a score=184342.000000 s hg38.chr1_KI270765v1_alt 137155 113 + 185285 GCGGAGTAAGTCTTCAAATTGATAATCTGAACTATAGAAGAGGAGAAACTTCAAGCACTCAAATATTTGAAATGCTACAAAATATTTATATAAACTATTATTTAACAATTTCT s panTro4.chr1_GL389091_random 159260 113 + 179278 GAGGAGTAAGTCTTCAAATTGATAATCTGAACTATAGAAGAGGAGAAACTTCAAGCACTCAAATATTTGAAATGCTACAAAATATTTATATAAACTATTATTTAACAATTTCT i panTro4.chr1_GL389091_random C 0 C 0 s nomLeu3.chr17 44145805 111 - 99891981 GTGGAGTAAGTCTTCAAATTGATAATCTGAACTATAT--GAGGAGAAACTTCAGGCACTAAAATATTTGAAATGCTATAAAATATTTATATAAACTATTTTTTAACTGTTTCT i nomLeu3.chr17 C 0 C 0 s macFas5.chr3 125021717 113 - 192294377 GTGGAATAAGTCTTAAAATTGACAATCTGAACTATATAAGAGGAGAAACTTCAGGCACTAAAATATTTGAAATGCTACAAAATATTTATATAAACTATTATTTAACCATTTCT i macFas5.chr3 C 0 C 0 s papAnu2.chr3 122284177 113 - 180432695 GTGGAATAAGTCTTAAAATTGACAATCTGAATTATATAAGAGGAGAAACTTCAGacactaaaatatttgaaatgctacaaaatatttatgtaaactATTATTTAACCATTTCT i papAnu2.chr3 C 0 C 0 s chlSab2.chr21 121540213 113 - 127223203 GTGGAATAAGTTTTAAAATTGACAATCTGAACTATATAAGAGGAGAAACTTCAGGCACTAAAATATTTGAAATGCTACAAAATATTTATATAAACTATTATTTAACCATTTCT i chlSab2.chr21 C 0 C 0 s calJac3.chr8 20084097 112 + 128169293 GTGAAGTAAGTATTCAAATTCATAATCTGAACTATGTAAGAGAAGAAACTT-ATGCACTAAAATATTTGAAATGCCACAAAATAGTTGTATAAACTATTATTTAACCATTTCT i calJac3.chr8 C 0 C 0 e rheMac3.chr3 124568720 1659 - 198365852 M e ponAbe2.chrUn 5688366 5219 + 72422247 I e canFam3.chr18 4105983 25 + 55844845 I a score=66372.000000 s hg38.chr1_KI270765v1_alt 137268 32 + 185285 GTTTGTAGAGTGCTATAGAGTAATCGATGTAA s panTro4.chr1_GL389091_random 159373 32 + 179278 GTTTATAGAGTGCTATACAGTAATCAATATAA i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 5693585 32 + 72422247 GTTTGTAGAGTGCTATACAGTAATCAATATAA i ponAbe2.chrUn I 5219 C 0 s nomLeu3.chr17 44145916 32 - 99891981 GTTTGTAGAGTGCTATACAGTAATCATTATAG i nomLeu3.chr17 C 0 C 0 s macFas5.chr3 125021830 32 - 192294377 GTTTGTAGAGTGCCATACAGTAATCATTATAG i macFas5.chr3 C 0 C 0 s papAnu2.chr3 122284290 32 - 180432695 GTTTGTAGAGTGCCATACAGTAATCATTATAG i papAnu2.chr3 C 0 C 0 s chlSab2.chr21 121540326 32 - 127223203 GTTTGTAGAGTGCCATACAGTAATCATTATAG i chlSab2.chr21 C 0 C 0 s calJac3.chr8 20084209 32 + 128169293 GTTTGTAGAATTTTATACAGTCAACAATATAG i calJac3.chr8 C 0 C 0 e rheMac3.chr3 124568720 1659 - 198365852 M e canFam3.chr18 4105983 25 + 55844845 I a score=112203.000000 s hg38.chr1_KI270765v1_alt 137300 39 + 185285 ATGACATCTC-AGTCTTTCTATAGCTTTGACCACATTTAC s panTro4.chr1_GL389091_random 159405 39 + 179278 ATGACATCTC-AGTCTTTCTATAGCTTTGAAAACATTTAC i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 5693617 40 + 72422247 ATGACATCTCAAGTCTTTCTATAGCTTTGACCACATTTAC i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr17 44145948 40 - 99891981 ATGACATCTCAAGTCTTTCTATAGCTTTGACCACATTTAT i nomLeu3.chr17 C 0 C 0 s rheMac3.chr3 124570394 40 - 198365852 ATGACATCTCAAGTCTTTCTATAGCTTTAACCACATTTAT i rheMac3.chr3 M 1659 C 0 s macFas5.chr3 125021862 40 - 192294377 ATGACATCTCAAGTCTTTCTATAGCTCTAACCACATTTAT i macFas5.chr3 C 0 C 0 s papAnu2.chr3 122284322 40 - 180432695 ATGACATCTCAAGCCTTTCTATAGCTTTAACCACATTTAT i papAnu2.chr3 C 0 C 0 s chlSab2.chr21 121540358 40 - 127223203 ATGACATCTCAAGTCTTTTTATAGCTTTACCCACATTTAT i chlSab2.chr21 C 0 C 0 s calJac3.chr8 20084241 40 + 128169293 ATGACATCTCAAGTCTTTCTATAGCTTTGAGCATATTTAC i calJac3.chr8 C 0 I 415 e canFam3.chr18 4105983 25 + 55844845 I a score=702056.000000 s hg38.chr1_KI270765v1_alt 137339 255 + 185285 CTCCTAATTTTAATTATTAATATGTTGGAGCAGTGCATACAACTAGATTCCGATCTTCCTTTTTAATGAGTAAAAATATGTCCTTTGAGACAGCATTAAAGAAAGAGCACCTTGTATAAATTCAATGCCAAGAGACAAGATATTCTTGATGCTGAAGTCTTGTTCTTTTATACAGCAATGTAATTAATAAGAAGAAGAAAAGCAGGACATAGAG-ATGGAGTCTATTTTCATCAAAAATTGTCTATAGATTTTGAT s panTro4.chr1_GL389091_random 159444 255 + 179278 CTCCTAATTTTAATTATTAATATGTTGGAGCAGTTCATACAACTAGATTCCGATCTTCCTTTTTAATGAGTAAAAATATGTCCTTTGAGACAGCATTAAAGAAAGAGCACTTTGTATAAATTCAATGCCAAGAGAAAAGATATTCTTGATTCTGAAGTCTTGTTCTTTTATACAGCAATGTAATTAATAAGAAGAAGGAAAGCAGGACATAGAT-ATGCAGTCTATTTTCATCAAAAATTGTCTATAGATTTTGAT i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 5693657 255 + 72422247 CTCCTAATTTTAATTATTAATATGTCGGAGCAGTGCATACAACTAGATTCCGATCTTCCTTTTTAATGAGTAAAAATATGTCCTTTGAGACAGCATTAAAGAAAGAGCACCTTGTATAAATTCAGTGCCAAGAGATAAGATATTCTTGATTCTGAAGTCTTGTTCTTTTATACAGCAATGTAATTAATAATAAGAAGAAAAGCAGGACATAGAT-GTAGAGTCTATTTTAATCAGAAATTGTCTATAGATTTTGAT i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr17 44145988 255 - 99891981 CTCCTAATTTTACTTATTAATATGTTGGAGCAGTGCGTACAACGAGATTCCAATCTTCCTTTTTAATGGGTAAAAATATGTCCTTTGAGACAGCATTAAAGAAAGAGCATCTTGTATGAATTCAATGCCAAGAGACAATATATTCTTGATTCTGAAGTCTTGTTCTTTTATACAGCAATGTAATTAATAATAAGAAGAAAAGCAGGACATAGGT-GTGGAGTCTATTTTAATAAAAAATTGTCTGTAGATTTTGAT i nomLeu3.chr17 C 0 C 0 s rheMac3.chr3 124570434 253 - 198365852 CTCCTAATTTTAATTATTAGTATGTTGAAGCAGTGCATACAACTAGATTCTGACCCTCCTATTTAATGAGTAAAAATATGTCCTCTGAAACAGCGTTAAAGAAAGAGCACCTTGTATGAATTCAATGCCAAGAGACAAGATATTCTTGATTCTGAAGTTTTGTTATTTCATACAGCAATGTAATTAATAATAAGAAG-AAAGCAGGACATAGGT-GTGGAGTCTATTTTAATCA-AAATTGTCTACAGATTTTGAT i rheMac3.chr3 C 0 C 0 s macFas5.chr3 125021902 253 - 192294377 CTCCTAATTTTAATTATTAGTATGTTGAAGCAGTGCATACAACTAGATTCTGACCCTCCTATTTAATGAGTAAAAATATGTCCTCTGAAACAGCGTTAAAGAAAGAGCACCTTGTATGAATTCAATGCCAAGAGACAAGATATTCTTGATTCTGAAGTTTTGTTATTTCATACAGCAATGTAATTAATAATAAGAAG-AAAGCAGGACATAGGT-GTGGAGTCTTTTTTAATCA-AAATTGTCTACAGATTTTGAT i macFas5.chr3 C 0 C 0 s papAnu2.chr3 122284362 253 - 180432695 CTcctaattttaattattagtaTGTTGAAGCAGTACATACAACTAGATTCTGACCCTCCTATTTAATGAGTAAAAATATGTCCTCTGAAACAGCGTTAAAGAAAGAGCACCTTGTATGAATTCAATGCCAAGAGACAAGATATTCTTGATTCTGAAGTTTTGTTATTTCATACAGCAATGTaattaataataagaag-aaagcaGGACGTAGGT-GTGGAGTCTATTTTAATCA-AAATTGTCTACAGATTTTgat i papAnu2.chr3 C 0 C 0 s chlSab2.chr21 121540398 249 - 127223203 CTCCTAATTTTAATTATT-GTATGTTGAAGCAGTGCATACAACTAGATTCTGACCCTCCTATTTAATGAGTAAAAATATGTCCTCTGAAACAGCGTTAAAGAAAGAGCACCTTGTATGAATTCAATGCCAAGAGACAAGATATTCTTGATTCTGAAGTTTTGTTATTTCATACAGCAATGTAAT---TAATAAGAAG-AAAGCAGGACATAGGT-GTGGAGTCTATTTTAATCA-AAATTGTCTATAGATTTTGCT i chlSab2.chr21 C 0 C 0 s calJac3.chr8 20084696 246 + 128169293 CTCCTAATTTTAGTTA---ATATATTGGAGCAGGGCATACAACTAGATTCTGATCCTCCTATTTAATGAGTCAAAATATGTCCTTTGAGACGGCATTGCAGGTAGAGCAGCTTGTATGAATTCAATACCAAGAGACAAGATCTTCTTGATTCTGAAGTTTTGTAGTTTTATACAGCAAAGTAAT-------AAAAAGAAAAGCAGGACATAGGTAATACAGTCTATTTTAATCAGCAGTGGTCTGTAGATTTTGAT i calJac3.chr8 I 415 C 0 e canFam3.chr18 4105983 25 + 55844845 I a score=2510403.000000 s hg38.chr1_KI270765v1_alt 137594 877 + 185285 GATAAAAT-TTAAAACTCTACTATATTTAGTTAGTCACAAAAA-ACGAGGTTGTGGGAACATATTTGGTCA-----AT-AAAACACCCCTACCAAATGCCGACAAGAAAAAAAGTTAGGTACCACCTTTCTTCTCTGCAGATGGCCTGAGATGGGTTAATTTGAAAGAAT--GCTTCCAAACCTGAGGTGACCCCTGAGAACAGCATAATCCACTGCTGTCTCCCACATTCAGTTTCTCAGTCTGTGCTCTTTTAATT--TTGGGGGGAGGGAAGCCAGTCCTTTAAAGCGATCTTCAGCATGATGGCAGAGCCAAGGAGTGTGGACAGGTGGCACGG-TGTCTGATTTTGTTCCAGCAGCCACTTGGGCTTTCTCTGGGTCTT-CTCTGCCCTCGGGATAGCACTACTATTGAAAACATGTCTTTGTGACATTCTCTATGCCAGGAACTCCCAACATATTTTCCTTGAAACTGATGAAATGAAAAAAAATAAACCAAGAGGTGTGCTGTTTGTTTCTGTTTCCTCCTTTCTGCAGCCCTTCTTGATCATCTAATATTTTTAAATACATTGTCGATCACCAAAAGGAGCATAAGGGCT----TTATTGGTTTGTAGCAGATGTATTCATAGCCCAGCCCCTATTCCTTAGCTGTAGCTGCTGGGAAGAAAACCATTCT-TAACACTCTA-CAAGGTCTCATCTCC-AGAATTTGCA-CCA--GTTTCTAGCTGAGGACTTTCTCTAGCAGCACGGGAGCTTGTTACTGGGCATGAAGTGGGAAGAAAAG-------------GTGAGGG-------TAACTAAGAAGA-------------ATCTCCCTGGATTCAGTGATGTAATTCTGAGG-CATGCTCCACATAGCTTCCCATAAA----ATTAAGCCCAGATATCTAACACAGGAACTTACCTCT s panTro4.chr1_GL389091_random 159699 871 + 179278 GATAAAAT-TTAAAACTCTACTATATTTAGTTAGTCACAAAAA-ACTAGGTTGTGGGAACATATTTGGTCA-----AT-AAAACACCCCTACCAAATGCTGACAAGAAAAAAAGTTAGGTACCACCTTTCTTCTCTGCAGATGGCCTGAGACGAGTTAATTTGAAAGAAT--GCTTCCAAACCTGAGGTGACCCCTGAGAACAGCATAATCCACCGCTGTCTCCCACATTCAGTTTCTCAGTTTGTGCTCTTTTCATT--TTGGGGGGAGGGAAGCCAGTCCTTTAAAGCGATCTTCAGCATGATGGCAGAGCCAAGGAGTGTGGACAGGTGGCACGA-TGTCTGACTTTGTTCCAGCAGCCACTTGGGCTTTCTCTGGGTCTT-CTCTGCCCTAGGGATAGCACTACTATTGAAAACATGTCTTTGTGACATTCTCTATACCAGGAACTCCCAACATATTTTCCCTGAAACTGATGAAATG-AATAAAATAAACCAAGAGGTGTGCTGTTTGTTTCTGTTTCCTCCTTTCTGCAGCCCTTCTTGATCATCTAATATTTTTAAATACATTGTCGATCACCAAAAGGAGCATAAGGGCT----TTATTGGTTTGTAGCAGATGTATTAAGAGCCCAGTCCCTATTCCTTACCTGTAGCTGCTGGGAAGAAAACCATTCT-TAACACTCTA-CAAGGTCTCATCTCC-AGAATTTGCACCCA--GTTTCTAGCTGAAGACTTTCTCTAACAGCACGGGAGCTTGTTACTGGGCATGAAGTGGG-AGAAAAG-------------TTGAGGG-------TAA-TAAAAAAA-------------ATCCCCCC-GATTCAGTGATG-AATTCCGAAG-CATG-TCCAAAAACCTTCCCCTAAA----AATAAGCCCAGAT-TCTAACACAGGAACTTCCCTCT i panTro4.chr1_GL389091_random C 0 M 568 s ponAbe2.chrUn 5693912 871 + 72422247 AATAAAAT-TTAAAAATCTACTATATTTAGTTAGTTACAAAAA-ACTAAGTTGTGGGAACATATTTGGTCA-----AT-AAAACACCCCTACCAAATGCTGACAAGAAAAAAAGTTAGGTACCACCTTTCTTCTCTGCAGATGGCCTGAGATGGATTAATCTGAAAGAAT--GCTTCCAAACCTGAGGTGACCCCTGAGAACAGCCTAATCCACTGCCGTCTCCTACATTCAGTTTCTCAGTTTGTGCTCTGTTAATT--TTGGGGAGCGGGAAGCCAGTCCTTTAAACCGATCTTCAGCATGATGGCAGAGCCAAGGAGTGTGGACAGGTGGCGCGG-TGTCTGACTTTGTTCCAGCAGCCACTTGGGCTTTCTCTGGGTCTT-CTCTGCCCTAGGGATAGCACCACTATTG-AAACATGTCTTTGTGACATTCTCTATGCCAGGAACTCCCAACACATTTTCCTTGAAACTGATGA-----ATAAAAATAAACCAAGAGGTGAGCTGCTTGTTTCTGTTTCCTCCTTTCTGCAGCCCTTCTTGATCATCTAAGATTTTTAAATACATTGTCGATCACCAAAAGGAGCATAAAGGCT----TTATTGATTTGTAGCAGATGTATTAATAGCCCAGCCCCTATTCCTTACCTGTAGCTGCTGGGAAGAAAACCATTCT-TAACACTCTA-CAAGGTCTCATCTCC-AGAATTTGCA-CCT--GTTTCTAGCTGAGGACTTTCTCCAGCAGCACGGGAGCTCGTTACTGGGCATGAACTGGGAAGAAAAG-------------GTGAGGG-------TAACTAAGAAGA-------------ATCTCCCTGGATTCAGTGACGTAATTCTCAGG-CATGTTCCACATAGCTTCCCATAGA----ATTAAGCCCAGATATCTAACACAGGAACTTGCCTCT i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr17 44146243 875 - 99891981 GATAAAAT-TTAAAAATCTACTATATTTAGTTAGTTACAAAAA-ACTAGGTTGTGGGAACATATTTGGTCA-----AT-AAAACATCCCTACCAAATGCTGACAAGAAAAAAAGTTAGGTACCACCTTTCTTCTCTGCATATGGCCTGAGATGGGTTAATTTGAAAGAAT--GCTTCCAAATCTGAGGTGACCCCTGAGAACAGCGTAATTCACTACTGTCTCTTACATTCAGTTTCTCAGTTTGTGCTCTTTTAATT--TTGGGGGGAGGGAAGCCAGTCCTTTAAACCGATCTTCAGCATGATGGCAGAACCAAGGAGTGTGGACAGGTGGCATGG-TGTCTGACTTTGTTCCAGCAGCCACTTGGGCTTTCTCCGGGTCTT-CTCTGCCCGAGGGATAGCACCACTGTTGAAAACATGTCTTTGTGACATTCTCTATGCCAGGAACCCCCAATGCATTTTCCTTGAAACTGATGAAATGAATAAAAATAAACCAAGAGGTGTGCTGTTCATT--TGTTTCCTCCTTTCTGCAGCCCCTCTTGATCACCTAATA-TTTTAAATACATTGTCAATCACCAGAAGGAGCATAAGGGGT----ATATTGATTTGTAGCAGATGTATTAATAGCCCAGCCCCTATCCCTTACCTGTAGCTGCTGGGAAGAAAACCATTTT-TAACTCTCTACCAAGGTCTCATCTCC-AGAATTTGCA-CCT--GTTTCTAGCCGAGGACTTTCTCTTGCAGCACCGGAGCTTGTTACTGGGCATGAAGTGGGAAGAAAAG-------------GTGAGGG-------TAACTAAGAAGA-------------TTCTCCCTGGATTCAGTGATGTAATTCTGAGG-CATGTTCCACATAGCTTCCCACAGA----ATTAAGCCCAGATATCTAACACAAGAACTTGCCTCT i nomLeu3.chr17 C 0 C 0 s rheMac3.chr3 124570687 862 - 198365852 GATGAAAT-TTAAAAAT-TACTATATTTAGTTAGTTCCAAATA-ACTAGGTTGTGGGACCATATTTGTTTA-----AT-AAAACACCCCTACTAAATGCT---GGAAAAAAAAGTTAGGTACCACCTTTCTTCTCTGCAGATAGCCTGAGATGGGTTAATTTG-AAGAAT--GCTTCCAAACCTGAGGTGACCCCTGAGAACAGCATAGTTCACTGCTGTCTCCTACATTCAGTTTCTCAGTTTGTGCTCTTTTAATT--TCGGGGGGAGGGAAGCCAGTCCTTTAAACTGATCTTCAGCATGATGGCAGAGCCAAGGAGTGTGGACAGGTGGCACGG-TCTGTAACCTTGTTCCAGCAGCCACTTGGGCTTTCTCCGGGTCTT-CTTCGCCCTAGGGATAGCATTATTACTGGAAACATGTCTTTGTGACGTTCTCTATGCCAGGAACTCCCGATGCATTTTCCTTGAAACTGATGAAATGAATAAAAATAAACCATGAGGTGTGCTGTTTGTTTCTGTTTCCTCCTTTCTGCAGCCCTTCTTGATCATCTAATA-TTTTAAATACATTGTCGATCACCAAAAGGAGCATAAGGGGT----ATATTGATTTGTACCGGAT---------GCCCAGCCCCTTTCCCTTACCTGTAGCTGCTCGGAAGAAAACCATTGT-TAACACTCTA-CAAGGTCTCATCTCC-AGTATTTGCA-CCT--GTTTCTACCTGAGGACTTTCTCTAGCAGCATGGGAGCTTATTACTGGGCATGGAGTGGGAAGAAGAG-------------GTGAGGG-------TAACTAAGAAGA-------------TTCTCCCTAGATTCAGTGATGTAATTCTGAGG-CATGTTCCGCGTAGCTTCCCATAGA----ATTAAGCCCAGATATCTAACACAAGAACTTGCCTCT i rheMac3.chr3 C 0 C 0 s macFas5.chr3 125022155 863 - 192294377 GATGAAAT-TTAAAAAT-TACTATATTTAGTTAGTTTCAAATA-ACTGGGTTGTGGGACCATATTTGTTTA-----AT-AAAACACCCCTACTAAATGCTG--GGAAAAAAAAGGTAGGTACCACCTTTCTTCTCTGCAGATAGCCTGAGATGGGTTAATTTG-AAGAAT--GCTTCCAAACCTGAGGTGACCCCTGAGAACAGCATAGTTCACTGCTGTCTCCTACATTCAGTTTCTCAGTTTGTGCTCTTTTAATT--TCGGGGGGAGGGAAGCCAGTCCTTTAAACTGATCTTCAGCATGATGGCAGAGCCAAGGAGTGTGGACAGGTGGCACGG-TCTGTGACCTTGTTCCAGCAGCCACTTGGGCTTTCTCCGGGTCTT-CTTCGCCCTAGGGATAGCATTATTACTGGAAACATGTCTTTGTGACGTTCTCTATGCCAGGAACTCCCGATGCATTTTCCTTGAAACTGATGAAATGAATAAAAATAAACCATGACGTGTGCTGTTTGTTTCTGTTTCCTCCTTTCTGCAGCCCTTCTTGATCATCTAATA-TTTTAAATACATTGTCGATCACCAAAAGGAGCATAAGGGGT----ATATTGATTTGTACCGGAT---------GCCCAGCCCCTTTGCTTTACCTGTAGCTGCTCGGAAGAAAACCATTGT-TAACACTCTA-CAAGGTCTCATCTCC-AGTATTTGCA-CCT--GTTTCTACCTGAGGACTTTCTCTAGCAGCATGGGAGCTTATTACTGGGCATGGAGTGGGAAGAAGAG-------------GTGAGGG-------TAACTAAGAAGA-------------TTCTCCCTAGATTCAGTGATGTAATTCTGAGG-CATGTTCCGCGTAGCTTCCCATAGA----ATTAAGCCCAGATATCTAACACAAGAACTTGCCTCT i macFas5.chr3 C 0 C 0 s papAnu2.chr3 122284615 863 - 180432695 gatgaaat-ttaaaaat-tactatatttAGTTAGTTCCAAATA-ACTAGGTTGTGGGAccatatttgttta-----ataaaaacacCCCTActaaatgct---gaaaaaaaaagttaggtacCACCTTTCTTCTCTGCAGATGGCCTGAGACGGGTTAATTTG-AAGAAT--GCTTCCAAACCTGAGGTGACCCCTGAGAAGAGCGTAGTTCACTGCTGTCTCCTACATTCAGTTTCTCAGTTTGTGCTCTTTTAATT--TCGGGGGGAGGGAAGCCAGTCCTTTAAACCGATCTTCAGCAAGATGGCAGAGCCAAGGGGTGTGGACAGGTGGCACGG-TGTGTGACCTTGTTCCAGCAGCCACTTGGGCTTTCTCCGGGTCTT-CTCCGCCCTAAGGATAGCACTATTACTGCAAACATGTCTTTGTGACATTCTCTATGCCAGGAACTCCGGACGCATTTTCCTTGAAActgatgaaatgaataaaaataaaccaaaatgtgtgctgtttgtttctgtttcctcttttctgcAGCCCTTCTTGAtcatctaata-ttttaaatacattgtcGATCACCAAAAGGAGCATAAGGGGT----ATATTGATTTGTACCAGAT---------GCCCAGCCCCTTTCCTTTACCTGTAGCTGCTGGGAAGAAAACCATTTT-TAACACTCTA-CGAGGTCTCATCTCC-AGTATTTGCA-CCT--ATTTCTACCTGAGGACTTTTTCTAGCAGCATGGGAGCTTATTACTGGGCATGGAGTGGGAAGAAGAG-------------GTGAGGG-------TAACTAAGAAGA-------------TTTTCCCTAGATTCAGTGATGTAATTCTGAGG-CATGTTCCACGTAGCTTCCCATAGA----ATTAAGCCCAGATATCTAACACAGGAACTTGCCTCT i papAnu2.chr3 C 0 C 0 s chlSab2.chr21 121540647 864 - 127223203 GATGAAAT-TTAAAAAT-TACTATATTTAGTTAGTTCCAAATA-ACTAGGTTGTGGGACCATATTTGTTTA-----AT-AAAACACCCCTACTCAATGCTG--AAAAAAAAAAGTTAGGCACCACCTTTCTTCTCTGCAGATGGCCTGAGATGGGTTAATCTG-AAGAAT--GCTTCCAAACCGGAGGTGACCCCTGAGAACAGCGTAGTTCACTGCTGTCTCCAACATTCAGTTTCTCAGTTTGTGCTCTTTTAATT--TCGGGGGGAGGGAAGCCAGTCCTTTAAACCGATCTTCAGCATGATGGCGGAGCCAAGGACTGTGGACAGGTGGCACGG-TCTGTGACCTTATTCCAGCAGCCACTTGGGCTTTCTCCGGGTCTT-CTCTGCCCTAGGGATAGCACTATTACTGCAAACATGTCTTTGTGACATTCTCTATGCCAGGAACTCCCGACGCATTTTCCTTGAAACTGATGAAATGAATAAAAATAAACCAAAATGTGTGCTGTTTGTTTCTGTTTCCTCTTTTCTGCAGCCCTTCTTGATCATCTAATA-TTTTAAATACATTGTCGATCACCAAAAGGAGCATAAGGGGT----ATATTGATTTGTACCAGAT---------GCCCAGCCCCTTTCCCTTACCTGTAGCTGCTGGGAAGAAAACCATTTT-TAACACCCTA-CGAGGTCTCATCTCTAAGTATTTGCA-CCT--ATTTCTACCTGAGGACTTTCTCTAGCAGCATAGGAGCTTATTACTGGGCATGGAGTGGGAAGAAGAG-------------GTGAGGG-------TAACTAAGAAGA-------------TTTTCCCTGGATTCAGTGATGTGATTCTGAGG-CATGTTCCACGTAGCTTCCCATAGA----ATTAAGCCCAGATATCTAACACGGGAACTTGCCTCT i chlSab2.chr21 C 0 C 0 s calJac3.chr8 20084942 750 + 128169293 GATAAAAT-TTCAAAGTCTACTATACTTAGTT----CCAAAAA-ACTAGG-TGTGGGAACATATTTGGTCA-----AC-AGAACACCCCAACCAAATGCTGACAAAAACAAAAGTTAGATAGCACCTTCCTTCTCTGCAGATGACCTGAGATGGGTTAATTTGGAAGAAT--GTTTCTAAACCTCAAGTGACCCCTGAGAACAGGATAATTCACTGCTGTCTCCTACATTCAGTTTCTCAGTTT-TGTTCTTTTAATA--ACTTGGGGAGGGAAGCCAGTCCTTTAAACTGATCTTCAGCATGATGGCAAATCCAGTGAGTGTGGACAGGTGGCACCA-TGTCTGACTTTGTCCCAGCAGCCACTTGGGCTTTCTCCGGGTCTT-CCCTGAACTTGGGATAGCACCACTACTGGCAACATGTCTTTGTGACATTCCCTAGGTCAGGAACTCCCAATGCATTTTCCTTGAAACTGATGA-----ATAAAATTACACCAAG-TGTGTGCTGTTTATT--TGTTTTCTCC-TTCTACAGCACTTCTTGATCATCTAATA-TT-------------------------------------------------------------------------------------------------CTGCTGGGAAGAAAACCATTTT-CAACACTCTA-CAAGGTCTCATGTCC-AGTACTTGCA-CCT--GTTTCTAGCTGAGGACTTTCTCTAGCAGCAC-GGAGCTTGTTACTGGGTGTGTGGTGGGAAGAAGTG-------------GTGAGGG-------AATCTAAGGAGG-------------GTCTCCCCGG-------------ATTCTGAGG-TGTGTTCCACGTAGCATCCCATAG--------ATGCTCACGTATCTGACACAGGAACATGAGTCT i calJac3.chr8 C 0 C 0 s canFam3.chr18 4106008 901 + 55844845 GATAAAATATTTAAAATTTGTTAGACTTGATTAACTTCAAAAATACTAGGCTGTGGGG-CATATTCAGTGATTCCTAC-CAAACATCCTCACTAAATGCTAACAAATGCAAATCTTAGATTTCCTGTTTCTTCTCTGCAGCTACCCTGAAATCTCTTAATTTGAAAGACCTGTTTTCTAAAACTGAAGTGACATCTGAGAACAGAGTAATTTACTCTGGTTTCCTAAACTCAG-TTCTCAATTTGTGTTCTTTTAATTCATTGGAGGAAAGGGAGCCAGTCCTTTAAA--GACT-----CATGTGCACAGAGCCA-TGTGCATGAGAAGATGGCAAGGCTGTGGGTGTCTTTCCCAGCAGCTATTTTATGATTTTTCAGGTCTTGTCCTTCCCTCGTGACACCATCACTACTTGAAACATGTTTTTGCTACATTCTCTATGCCAGCCACTCCCAAAACATTTTCCCTGAAACTGAAGGAATGAATAAAAATAAGCCAAGAGATAT-------------------TATCTTCTACAAGATTTCTAGGTGTTCTAA-A-TCTAAAATACAATGTGAATCACCAAATGAAGAATAAAGGCTACAGATGTGTATTTATACCAGATGTTCGAATGGCCTGTCCTGTGTTTTCT-CGCAAAGCTGCTGGGAAGAAAACTATTTTCCGACACTTGT-CAGGG--TAACCTCC-AGCAGCTTAA-TCTCCATTTCTACATAAGGACTAACTCTAGCACCAGAGGAAATAGTTACTGGGGATGGGAAGAGAAAAATGGTCAAACTAACATCTTAAGGGCACCTCACAATTAAGGAGAGGTAGATATATAGGTCTCCCTCTCTTTGGTACTACAGTTTTGAGGTTCTGTTCCACCTGGCTTCCAACAGAATTGATTGAGTTTTGGTGTCTAGCACAAGAATTTGTTTAT i canFam3.chr18 I 25 C 0 a score=193443.000000 s hg38.chr1_KI270765v1_alt 138471 94 + 185285 TAACACG--TGTGGTATTGGCTTTTCTGTCTTTCCTGTTTTATTTTGT---------TCTCTTTTCCT---TGTCTCACTT-TCGC----TGTG--------TCCTCACTCCTGCTTTAAG s ponAbe2.chrUn 5694783 92 + 72422247 TAACATG--TGTGGTATTGGCTTTTCTGTCTTTCCTGTTTTATTTTAT---------TCTCTCTTCCT---TGTCTCATTT-TCAC------TG--------TCCTCACTCCTGCTTTAAG i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr17 44147118 97 - 99891981 TAACACA--TGTGGTATTGGCTtttctatttttcctgttttatttttc---------tctctcttcctttctgtttcactt-tcac----tGTG--------TCCTCACTCCTGCTTTAAG i nomLeu3.chr17 C 0 C 0 s rheMac3.chr3 124571549 103 - 198365852 TAACACA--TATGGTATCGGCTtttctatctttcctgtttttttttttttttctctctctctcttcct---cgtctcactt-tcAC----TGTG--------TCCTCACTCCTGCTTTAAG i rheMac3.chr3 C 0 C 0 s macFas5.chr3 125023018 103 - 192294377 TAACACA--TATGGTATCGGCTtttctatctttcggttttttttttttttttctctctctctcttcct---cgtctcactt-tcac----tgtg--------tcctcactcCTGCTTTAAG i macFas5.chr3 C 0 C 0 s papAnu2.chr3 122285478 99 - 180432695 TAACACA--TGTGCTATTGGCTTTTctatctttcctgttttttttttttttt-----tctctcttcct---cgtCTCACTTATCAC----TGTG--------TCCTCACTCCTGCTTTAAG i papAnu2.chr3 C 0 C 0 s chlSab2.chr21 121541511 99 - 127223203 TAACACA--TGTGCTATTGGCTTTTCTATCTTTCCTGTGTTTTTTTTTTTTT----CTCTCTCTTCCT---CGTCTCACTT-TCAC----TGTG--------TCCTCACTCCTGCTTTAAG i chlSab2.chr21 C 0 C 0 s calJac3.chr8 20085692 90 + 128169293 TAACACA--TGCCATATTGGCTTTTCTACCTTTCCTGTTTTATTTTT----------TATCTCTT------TGTCTCAATT-TTAC----TATG--------TCCTCACTCCTGCTTTAAG i calJac3.chr8 C 0 I 321 s canFam3.chr18 4106909 103 + 55844845 TAACATATTTATGTTAAT-GCTTTTCTAT-TTGCTGGCTTTATTTCTTT--------CCTCTCTTCCT---TGTCTCCCTT-TCACATGTTTTGAAGATTATTCCCCACCCC----CCAAA i canFam3.chr18 C 0 C 0 e panTro4.chr1_GL389091_random 160570 568 + 179278 M a score=246512.000000 s hg38.chr1_KI270765v1_alt 138565 134 + 185285 AATACCCA--------------------------AACAAATACGT---------------------------------------------------TCATTT-----------------------------------------------------------------------------------ATTTTTTTA--GACTCTCA-GAACACAG----------TTGATAGTTGAACTTGTAATCTATGA---TAATCAGCTTGGATGCTGTATTGACAGGAAGATGGTGAACTCACAATGTCTAATTAAG s ponAbe2.chrUn 5694875 134 + 72422247 AATACCCA--------------------------AATGAATACAT---------------------------------------------------TCATTT-----------------------------------------------------------------------------------ATTTTTTTA--GACTCTCA-GAACACAG----------TTGATAGTTGAACTTGTAATCTATGA---TAATCAGCTTGGATGCTATACTGACAGGAAGATGGTGAACTCACAATGTCtaattaag i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr17 44147215 133 - 99891981 AATACCCA--------------------------AACAAATACAT---------------------------------------------------TCATTT-----------------------------------------------------------------------------------AGTTTTTTA--AACTCTCA-GAACA-AG----------TTGACAGTTGAACTTGTAGTCTGTGA---TAATCAGCTTGGATGCTATACTGACAGTAAGATGGTGAACTCACAATGTCTAATTAAG i nomLeu3.chr17 C 0 C 0 s rheMac3.chr3 124571652 134 - 198365852 AATATCCA--------------------------AACAAATATAT---------------------------------------------------TCATTT-----------------------------------------------------------------------------------CTTTTTTTT--AACTCTCA-GAACACAG----------TTGACAGTTGACGTTGTAATTTATGA---TAATCAGCTTGGATGCTATACTGACAGTAAGATGGTGAACTCACAACATCTAATTAAG i rheMac3.chr3 C 0 C 0 s macFas5.chr3 125023121 134 - 192294377 AATATCCA--------------------------AACAAATATAT---------------------------------------------------TCATTT-----------------------------------------------------------------------------------CTTTTTTTT--AACTCTCA-GAACACAG----------TTGACAGTTGACGTTGTAATTTATGA---TAATCAGCTTGGATGCTATACTGACAGTAAGATGGTGAACTCACAACATCTAATTAAG i macFas5.chr3 C 0 C 0 s papAnu2.chr3 122285577 131 - 180432695 AATACCCA--------------------------Aacaaatacat---------------------------------------------------tcat--------------------------------------------------------------------------------------tttttttt--aactctca-gaACACAG----------TTGACAGTTGACATTGTAATTTATGA---TAATCAGCTTGGATGCTATACTGACAGTAAGATGGTGAACTCACAACATCTAATTAAg i papAnu2.chr3 C 0 C 0 s chlSab2.chr21 121541610 136 - 127223203 AATACCCA--------------------------AACAAATACAT---------------------------------------------------TCATTT-----------------------------------------------------------------------------------CTTTTTTTTTAAACTCTCA-GAACGCAG----------TTGACAGTTGACATTGTAATTTATGA---TAATCAGCTTGGATGCTATACTGACAGTAAGATGGTGAACTCACAATAGCTAATTAAG i chlSab2.chr21 C 0 I 19 s calJac3.chr8 20086103 132 + 128169293 AACACCCA--------------------------AACAAATGCCT---------------------------------------------------TCATGT-----------------------------------------------------------------------------------CATTTTAT---ACTTCCCA-GAACACAG----------TTGTCAGTTGAAGTCGTAATCTATGA---TAATCAGCTTGGATGCTATACTAACAGTAAGATGGTGAACTCATGATGTC-AATTAAG i calJac3.chr8 I 321 C 0 s canFam3.chr18 4107012 306 + 55844845 AAACCCCACATTAACTTCTCTTTTGATTTCACAGAACAAGTACATAGCACTTGAAACCATAATCTTgggcagccccagtagctcagtagtttagcatcactttcggcctagggcatgatcctggagacccaggatcaagtcccccgtcgggctccctgcatggagcctgcttctccctcagcctgtgtctctgt--gtctctcatgaatacataaataaaatcttaaaaaTAGAAACCATAATTTTTTACTGTGATGACTTTGGAGGTTCTCATGGCACTATAATTGTGAA--GACAAGGTCAAATTAGT i canFam3.chr18 C 0 C 0 e panTro4.chr1_GL389091_random 160570 568 + 179278 M a score=5624.000000 s hg38.chr1_KI270765v1_alt 138699 12 + 185285 ATACAATTTAAA s ponAbe2.chrUn 5695009 11 + 72422247 ataaaa-ttaaa i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr17 44147348 11 - 99891981 TTAAGA-TAAAA i nomLeu3.chr17 C 0 I 4 s rheMac3.chr3 124571786 11 - 198365852 TTAAGA-Caaaa i rheMac3.chr3 C 0 I 8 s macFas5.chr3 125023255 11 - 192294377 TTAAGA-CAAAA i macFas5.chr3 C 0 I 8 s papAnu2.chr3 122285708 11 - 180432695 ttaagg-caaaa i papAnu2.chr3 C 0 I 7 s calJac3.chr8 20086235 11 + 128169293 TTAAAA-TGAAA i calJac3.chr8 C 0 I 2 s canFam3.chr18 4107318 9 + 55844845 -Gatta-taaa- i canFam3.chr18 C 0 C 0 e chlSab2.chr21 121541746 19 - 127223203 I e panTro4.chr1_GL389091_random 160570 568 + 179278 M a score=605785.000000 s hg38.chr1_KI270765v1_alt 138711 268 + 185285 AAATATATTGAATCATGTCCAAAGACTT--AAAAAGCCTAAGC--GGCAGCGTCACAGTTTCTTCTTTTTAGTTTGCATGGTTTCTTAAATGCCTACAATTATTTTAAAGGAAGCCTTGAGTCTAGGAAAAATTGAGACATATGGAATAAATTACTAACCCATTTCTCCTTGAAATCCATTAGATGTTTGATGATTCTT-CACATAT-ATTTCTGAACTGAAAAGCTAGTTGGGAATTATTTTTATAAGCATATCCTTATGTAATATA--TTGTTT s ponAbe2.chrUn 5695020 268 + 72422247 aaatatattGATTCATGTCCAAAGATTT--AAAAAACCTAAAC--GGCAGTGTCACAATTTCTTCTTTTTAGTTTACATGGTTTCTTAAATGCCTACAATTATTTTAAAGGAAGCCTTGAGTCTAGGAAAAATGGAGACATATGGAATAAATTACTAACCCATTTCTCCTTGAAATCCATTAGATGCTTGATGATTTTT-CACATAC-ATTTCTGAATTGAAAAGCTAGTTGTGAATTATTTTTATAAGCATATCGTTATGTAATATT--TTATTT i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr17 44147363 270 - 99891981 AAAAATATTGATTCATGTCCAAATATTT--TAAAAAACTTAACCAGGCAGTGTCACAATTTCTTCTTTTTAGTTTACATGGTTTCTTAAATGCCTACAATTGTTTTAAAGGAAGCCTTGTGTCTAGGAAAAATTGAGACATATGGAATAAATTACTAACCCATTTCTCCTTGAAATCCATTAGATGCTTGATGATTTTT-CATATAT-ATTTCTGAATTGAAAAGCTAGCTGTGAATTATTTTTATAAGCATATCCTTATGTAATATT--TTGTTT i nomLeu3.chr17 I 4 C 0 s rheMac3.chr3 124571805 258 - 198365852 atatatattGATTCATGTCTAAAGATTT--AAAAAACCTAGCC-AGGCAGTGACAAAATATCTTCTTTTGAGTCTACATGATTTCTCAAATGCCTACAATTATTTTAAAGGAAGTCTTGCATCTAGGAAAAATTGAGACATATGGAATAAATTACTAACCCATTTCTTCTTGAAATCCATTAAAGGCTTGATGATT-------------TTTCTGAATTGAAAAACTAGTTGTGAATTATGTTTATAAGCATATCCTTATGTAATATT--TTCTTT i rheMac3.chr3 I 8 C 0 s macFas5.chr3 125023274 258 - 192294377 ATATATATTGATTCATGTCTAAAGATTT--AAAAAACCTAGCC-AGGCAGTGACAAAATATCTTCTTTTGAGTCTACATGATTTCTCAAATGCCTACAATTATTTTAAAGGAAGTCTTGCATCTAGGAAAAATTGAGACATATGGAATAAATTACTAACCCATTTCTTCTTGAAATCCATTGAAGGCTTGATGATT-------------TTTCTGAATTGAAAAACTAGTTGTGAATTATGTTTATAAGCATATCCTTATGTAATATT--TTCTTT i macFas5.chr3 I 8 C 0 s papAnu2.chr3 122285726 267 - 180432695 --aaatattgattcatgtccaaagattt--aaaaaacctagcc-aggcagTGACacaatatcttcttttgagtCTACATGATTTCTTAAATGCctacaattattttaaaggaagTCTTGCATCTAGGAAAAATTGAGACATACAGAATAAATTACTAACCCATTTCTTCTTGAAATCCGTTAGAGGCTTGATGATTTTT-TGCATAC-ATTTCTGAATGGAAAAACTAGTTGTGAATTATGTTTATAAGCGTATCcttatgtaatatt--ttcttt i papAnu2.chr3 I 7 C 0 s chlSab2.chr21 121541765 267 - 127223203 ATATATATTGATTCACGTCCAAAGATTTAAAAAAAACCTAGCC-AGGCAGTGACACAATATCTTCTTTTGAGTCTACATGATTTCTTAAATGCCTACAATTATTTTAAAGGAAGTCTTGCATCTAGGAAAAATTGAGACATATGGAATAAATT----ACCCATTTCTTCTTGAAATCCTTTAGAGGCTTGATGATTTTT-CACATAC-ATTTCTGAATTGAAAAACTAGTTGTGAATTATGTTTATAAGCATATCCTTATGTAATATT--TTCTTT i chlSab2.chr21 I 19 C 0 s calJac3.chr8 20086248 265 + 128169293 AAAAATACTGATTAATGTCCAAATATTT--AAAAAACCTAACC-ACGCAGTGTCACAATATCTTC-TTTGAGTTTACATGGTTTCTTAGATGCCTACAATTATTTTAAAGGAGGTCTTGAGTCTAGGAAAAATGGAGACGT--GGAATAAATTATTAACCTATTTCTCCTTGAAATCCGTTAGATACTTGGTGATTTTT-CACATAC-ATTCCTGAATTGAAAAACTAATCATGAATTAT-TTTATAAACATATCCTTATGTAATATT--TTATTT i calJac3.chr8 I 2 C 0 s canFam3.chr18 4107327 264 + 55844845 aaatatatatattcacatttaaagttta--aaaaaaaaCAACT--AGTTGT-------TATCCTCTTTTGAGTTAACATCGGCTCTTGAAT-CTCATGATTATTTTAAGGGAGGCCCTGGTTCCAGGAAAAATTGTGATATGCTGAATAAGTTATTAACCTATTCATCATTAGAAAATTCTAGATGCTTGAGGATTTTTACATATGTAATCTCTGATTTAAAAAAATCATCATGGATTCATTCTATAAATATATTATTATGTAACATTAGtttttt i canFam3.chr18 C 0 I 107 e panTro4.chr1_GL389091_random 160570 568 + 179278 M a score=178574.000000 s hg38.chr1_KI270765v1_alt 138979 86 + 185285 -------------------------------------------------------------------------------------------------------CTAAG--------------------------------------------AGTGAATGGAAGGTTTAAAGAT----TAAATTATTCTATCCAGAGAATAAAAAACAATTATTTCACAAGGAGAACATGTGTATGT s ponAbe2.chrUn 5695288 86 + 72422247 -------------------------------------------------------------------------------------------------------TTAAC--------------------------------------------AGTGAATTGAAGGTTTAAAGAT----TAAATTATTCTATCCAGAGTATAAAAAGCAATTATTTCACAAGGAGAACACGTGTATAT i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr17 44147633 86 - 99891981 -------------------------------------------------------------------------------------------------------TTAAC--------------------------------------------AGTGAATTGAAGGTTTAAAGAT----TAAATTATTCTATCCAGAGAATAAAAAGCAATTATTTCACAAGGAGAACATGTATATGT i nomLeu3.chr17 C 0 C 0 s rheMac3.chr3 124572063 85 - 198365852 -------------------------------------------------------------------------------------------------------TTAAC--------------------------------------------AGTGAA-TGAAGGTTTAAAGAT----TAAATTATTCTATCCAGAGAATAAAAAGCAATTATTTCACAAGGAGCACATGTATATGT i rheMac3.chr3 C 0 C 0 s macFas5.chr3 125023532 86 - 192294377 -------------------------------------------------------------------------------------------------------TTAAC--------------------------------------------AGTGAATTGAAGGTTTAAAGAT----TAAATTATTCTATCCAGAGAATAAAAAGCAATTATTTCACAAGGAGCACATGTATATGT i macFas5.chr3 C 0 C 0 s papAnu2.chr3 122285993 86 - 180432695 -------------------------------------------------------------------------------------------------------ttaac--------------------------------------------agtgaATTGAAGGTTTAAAGAT----TAAATTATTCTATCCAGAGaataaaaagcaattattttacAAGGAGCACATGTATATGT i papAnu2.chr3 C 0 C 0 s chlSab2.chr21 121542032 81 - 127223203 -------------------------------------------------------------------------------------------------------TTAAC--------------------------------------------AGTGAATTGAAGGTTTAAAG---------ATTATTCTATCCAGAGAATAAAAAGCCATTATTTCACAAGGAGCACATGTATATGT i chlSab2.chr21 C 0 C 0 s calJac3.chr8 20086513 86 + 128169293 -------------------------------------------------------------------------------------------------------TTATC--------------------------------------------AGCGAATTAAAGGTTTAAAAAT----CAAATTATTATATACAGAGAATAAAAAGCAATTATGTCACAAGGAGCACCTGTATATGT i calJac3.chr8 C 0 C 0 s canFam3.chr18 4107698 237 + 55844845 ctaagagggaagcccaatgtggaacttgttcccatgccaggaagcccaatgtggaacttgttcccatgttctctaagatcatgacccaagtcaaagcagatgcttaactggttgagccacccaggATACATGTAACATTGTTTTATTTATAAAGAGAACTGAAGGTGGAAGATTAACCTAACTTCTTCTATTTAAAGAATAAAAAGCAATTATTTCACAAGCAAAAGAGGTATAGGT i canFam3.chr18 I 107 C 0 e panTro4.chr1_GL389091_random 160570 568 + 179278 M a score=94369.000000 s hg38.chr1_KI270765v1_alt 139065 35 + 185285 TGACACGACATTTTAAAATCTAGATTTTAAAATAG s panTro4.chr1_GL389091_random 161138 35 + 179278 TGACACGACATTTTAAAATCTAGATTTTAAAATAG i panTro4.chr1_GL389091_random M 568 C 0 s ponAbe2.chrUn 5695374 35 + 72422247 TGACACGACATTTTAAAATCTAGATTTTAAAATAG i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr17 44147719 35 - 99891981 TGACAGGACATTTTAAAATCTAGATTTTAAAATAG i nomLeu3.chr17 C 0 C 0 s rheMac3.chr3 124572148 35 - 198365852 TGACATGACCTTTTAAAATCTAGATTTTAAAATAG i rheMac3.chr3 C 0 M 580 s macFas5.chr3 125023618 35 - 192294377 TGACATGACCTTTTAAAATCTAGATTTTAAAATAG i macFas5.chr3 C 0 C 0 s papAnu2.chr3 122286079 35 - 180432695 TGACATGACCTTTTaaaatctagattttaaaatag i papAnu2.chr3 C 0 C 0 s chlSab2.chr21 121542113 35 - 127223203 TGACATGACCTTTTAAAATCTAGATTTTAAAATAG i chlSab2.chr21 C 0 C 0 s calJac3.chr8 20086599 27 + 128169293 TGACATGGC--------ATGTAGATCTTTAAATAG i calJac3.chr8 C 0 C 0 s canFam3.chr18 4107935 28 + 55844845 TGACAAGGTATGTAGATAT-----TTTTAAAGT-- i canFam3.chr18 C 0 C 0 a score=1077367.000000 s hg38.chr1_KI270765v1_alt 139100 441 + 185285 GTCCCATATAATTTTGAGTCAATTAGAATACGTTTGTATCAGTCTGTCTACAGTTTTACACCTGTCAAATGTTACTTGAACTAA-AAGAAGTACCTTGAACAATTTTGAAATTTATTATTCCTCTGAAACTGATGAAAAGAATGACGGTAGAGTGAA--ATTTGGATTGGCATAATTTAGGAGAGAAATTATTCCTTGGAGATCAACCTCTGCCAAGATAGTTTACAATGACATTGATACTTTTTGATTTACACAATTTGTTATATAAAAAATACTAAGAC-GATGACAGATAATACACAGACTTTAATTAAAATTGT-ACTAAAATTAAAAGTCTAAATAAATTACAAGTGTACGTGGTACACCTAAACGTATGTTTATATATTTTATTTGTGCATTTTATTCCTAGGGTTCCTTTTGCTTTAGTTTGTAAAACGTTCTTATTTT- s panTro4.chr1_GL389091_random 161173 441 + 179278 GTCCCATATACTTTTGTGTCAATTAGAATATGTTTGTATCAGTCTGTCTACCGTTTTACACCTGTCCAAAGGTACTTGAACTAA-AAGAAGTACCTTGAACAATTTTGAAATTTATTATTCCTCTGAAACTGATTAAAAGAATGACGGTAGAGCGAA--ATTTGGATTGGCATAATTTAGGAGAGAAATTATTCCTTGGAGATCAACCTCTGCCAAGATAGTTTATAATGACATTGAGACTTTTTGATTTACACAATTTGTTATATAAAAAATACTAAGAC-GATAACAGATAATACGCAGACCTTAATTAAAATTGT-ACTAAAATTAAAAGTCTAAATAAATTACAAGGGTACGTGGTACATCTAAACGTGTGTTTATATATTTTATTTGTGCATTTTATTCCTAGGGTTGCTTTTGCTTTAGTTTGTAAAACGTTCTTATTTT- i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 5695409 441 + 72422247 GTCCCATATACTTTTGAGTCAATTAGAATATGTTTGTATCAGTCTGTCTACAGTTTTACACCTGTCAAAATGTACTTGAACTAC-AACAAGTACCTTGAACAATTTTGAAATTTATTATTCCTCTGAAACTGATTAAAAGAATCATGGTAGAGTGAA--ATTCTGATTGGCATAATTTGGGAGAGAAATTATTCCTTGGAGATCAACCTCTGCCAAGATAGTTTATAATGACATTGAGACTTTTTGATTTACAAAATTTGTTACATAAAAAATACTAAGAC-GATGACAGATAATACACAGACTTTAATTAAAATTGT-ACTAAAATTAAATGTCTAAATAAATTAGAAGGGTATGTGGTACATCTAACTGTACGTTTATATATTTTATTTGTGCATTTTATTCCTAGGGTTGCTTTTGCTTTAGTTTGTAAAACGTTCTTATTTT- i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr17 44147754 438 - 99891981 GTCCCATATATTTTTAAGTCAATTAGAATATGTTTGTATCAGACTGTCTACAGTTTTAAACCTGTCAAAATGTACTTGAACTAC----AAGTACCTTGAACAATTTTGAAATGTATTATTCCTCTGAAACTGATTAAAAGAATTATGATATAGTGAA--ATTCTGATTGGCATAATTTGGGAGAGGAATTATTCCTTGGAGATCATCCCCTGCCAACATAGTTTATAATGACATTGAGACTTTTTAATTTATAAAATTTGTTATATAAAAAATACTAAGAC-GATGACAGATAACGCACAGACTTTAATTAAAATTGT-ACTAAAATTAAATGTCTAAATAAATTAGAAGGGTACGTGGTACATCTAATTGTATGTTTATATATTTTATTTGTGCATTTTATTCCTAGGGTTGTTTTTGCTTTAGTTTGTAAAACGTTCTTATTTT- i nomLeu3.chr17 C 0 C 0 s macFas5.chr3 125023653 436 - 192294377 ATCATATATATTTTTGAGTCAATTAGAATATGTTTGTATCAATCTGTCTACAGTTTTACACCTGTAAAAATGTACTTGAACTAC-AACAAGTACCTTGAACAATTTTGAAATTTATTATTCATCTGAAACTGATTAAAAGAATTATGGTATAGTGAA--ATTCTGATTGGCATAATTTGGGAGAGGAATTATTCCTTGGAGATCAACACCTGCCAAGATAATTTATAATGACATGGAGACTTTTTGATTTACAAAATTTGTTATAT-AAAAATACTAAGAA-GATGATAGATAATACACAGACT----TTAAAATTGT-ACTAAAATTAAATGTCTAAATAGATTAGAAGGGTATGTGGTACATCTAATTGTATATTTGTATATTTTATTTGTGCATTTTATTCCTAGGGTTGTTTTTGCTTTAGTTTGTAAGACGTTCTTATTTT- i macFas5.chr3 C 0 C 0 s papAnu2.chr3 122286114 432 - 180432695 attctatatatttttgagtCAATTAGAATATGTTTGTATCAATCTGTCTACAGTTTTATACCGGTAAAAATGTACTTGAACTAC-AACAAGTACCTTGAACAATTTTGCAATTTATTATTCATCTGAAATGGATTAAAAGAATTATGGTATAGTGTA--ATTCTGATTGGCATAATTTGGGAGAGGAATTATTCCTTGTAGATCAACCCCTGCCAAGATAATTTATAATGACATTGAGActttttgatttataaaatttgttatat-aaaaatactaaGAA-GATGATAGGTAATATACAGACT----TTAAAATTGT-ACTAAAATTAAATGTCTAAATAAATTAGAAGG----GTGGTACAtctaattgtatatttatatattttatttgtgcattttattcctagggttgtttttgctttagtttgtAAGACGTTCTTATTTT- i papAnu2.chr3 C 0 C 0 s chlSab2.chr21 121542148 432 - 127223203 ATCCTATATATTTTTGAGTCAATTAGAATATGTTTGTATCAATCTGTCTACAGTTTTACACCTGTGAAAATGTACTTGAACTAC-AACAAGTACCTTGAACAATTCTGAAATTTATTATTCATCTGAAACTGATTAAAAGAATTATGGTATAGTGAA--ATTCTGATTGGCACAATTTGGGAGAGGAATTATTCCTTGGAAATCAACCCCTGCCAAGATAATTTATAATGACATTGAGACTTTTTGATTTACAAAATTTGTTATAT-AAAAATACTAAGAA-GATGATAGATAATACACAGACT----TTAAAATTGT-ACTAAAATTAAATGTCTAAATAAATTAGAAGG----GTGGTACATCTAATTGTATATTTATATATTTTATTTGTGCATTTTATTCCTAGGGTTGTTTTTGCTTTAGTTTGTAAGACGGTCTTATTTT- i chlSab2.chr21 C 0 C 0 s calJac3.chr8 20086626 438 + 128169293 ATCCCATATATTTTTGGGTCAATTTCAATATGTTTCTATCAGTCTGTCTACAGTTTTACACCTGTCAAAATGTACTTGAACTATAAACAAGTAACTTGAACAATTTTGAAATTTATTATTCCTTTGAAACTGATTGAAAGAATTATGTTATAGTGAA--ATTCTGATTGGCCTAATTTGGGAGAGAGATTATTCCTTAGAGGTCAACCCCTGCCAAGATAGTTTATAATGACATTGAGACTTTTTGatttat--aattttttatataaaaattaCTAAGAAGGATAATAGATAATACACAGACTTTACTTAAAATTGT-TCTAAAATTAAATGTCTAAATAAATTAGAAGGGTACGTGGTACACCTAATTGTATGTTTGTATATTTTATTTGTG--TTTTATTCCTA-GGTGTTTTTTGCTTTGGTGTTTAAAACGTTCTTACTTt- i calJac3.chr8 C 0 I 553 s canFam3.chr18 4107963 431 + 55844845 TCCATATATATTTTTGAGTCAATTAAAATGTTTTTTAA--AGTCTGTCTGCAGTTTTATAACTGTCAAA-TGTGCTTGAACTAGAAATAAGTGCCTTAAACAATTTTGAAATTTATTATTCCCCTGACACTGATTGAAAGAATTATGGGATGGTGAAATATTCTGAATGACACAGTTTAGGACAGGAATAATTCCCCAGAGTTCAAGCCCTGCCAAGATAGTTTACAGTGACATAGAAACTTTTGAATATAAAACATTTTTGAGAAAAAGAGCATTAAGAA--TTAATAGATAAAATAT--TTTTTAACTAAAAATGTAACTAAACATAGGTGTCTAAAAAAATTGAATAGGAATGTTGTGCCT---------TAATTGTGTATTTTATTGATGCATTTTAAGTCTAGGTGATTTTTTTCTTTTGTTTATGAAAGTATGTTGCTTTT i canFam3.chr18 C 0 C 0 e rheMac3.chr3 124572183 580 - 198365852 M a score=48807.000000 s hg38.chr1_KI270765v1_alt 139541 26 + 185285 TATGGCA-GTGTAGTATATACTAAATA s panTro4.chr1_GL389091_random 161614 26 + 179278 TATGACA-ATGTAGTATATAATAAATA i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 5695850 26 + 72422247 TATGATA-AGGTAGTATATACTAAATA i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr17 44148192 26 - 99891981 TATGATA-ATGTATTATATACTAAATA i nomLeu3.chr17 C 0 C 0 s macFas5.chr3 125024089 26 - 192294377 TATGATA-ATGTATTATATACAAAATA i macFas5.chr3 C 0 C 0 s papAnu2.chr3 122286546 26 - 180432695 TATGATA-ATgtattatatacaaaata i papAnu2.chr3 C 0 C 0 s chlSab2.chr21 121542580 26 - 127223203 TATGATA-ATGTATTATATGCAAAATA i chlSab2.chr21 C 0 C 0 s canFam3.chr18 4108394 27 + 55844845 TATAATAGATGTATTATATGCCAAATA i canFam3.chr18 C 0 C 0 e calJac3.chr8 20087064 553 + 128169293 I e rheMac3.chr3 124572183 580 - 198365852 M a score=411678.000000 s hg38.chr1_KI270765v1_alt 139567 168 + 185285 AAGAAAAATCAGGAAATAGAAAATGAAGAAG-AAAACATTAGCTATTGTCAACCAAATAAA------AATTGTGCAATCTCTAAGTACATGAACGATGTATTATTTGTACAGCATGTACAATGTTTATGCTTCACAGGGTGAGGTAGAGACTGC-AAAACATTGAACCTGGGACAA s panTro4.chr1_GL389091_random 161640 168 + 179278 AAGAAAAATCAGGAAATAGAAAATGAAGAAG-AAAACATTAGCTATTTTCAACCAAATAAA------AATTGTGCAATCTCTAAGTACATGAACGATGTATTATCTGTACAGCATGTACAATCTTTATGCTTCACAGGGTGAGGTAGAGACTGC-AAAACATTGAACCTCGGACAA i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 5695876 165 + 72422247 AAGAAAAATCAGGAAATAGAAAAT---GAAG-AAAACATTAGCTATTGTCAACCAAATAAA------AATTGTGCAATCTCTAAGCACATGAACTATGTATTATTTGTACAGCATGTACAATGTTTATGCTTCACAGGGTGAGGTACAGACTGC-AATATATTGAACCTGGGACAA i ponAbe2.chrUn C 0 M 171 s nomLeu3.chr17 44148218 168 - 99891981 AAGAAAAATCAGGAAATAGAAAATGAAGAAG-AAAACATTAGCTATTGTCAACCAAATAAA------AATTGTGCAATCTCTAAGCACATGAACTATGTATTATTTGTACAGCATGTACAATGTTTATGCTTCACAGGGTGAGGTAGAGACTGC-AAAATATTTAGCCTGGGACAA i nomLeu3.chr17 C 0 C 0 s macFas5.chr3 125024115 168 - 192294377 AAGAAAAATCAGGAAATAGAAAATGAAGAAG-AAAACATTAGCTATTGTCAACCAAATAGA------AATTGCACAGTCTCTAAGCACATGAACTTTGTATTATTTGTACAGTATGTACAATATTTATGCTTCACAGGGTAAGGTAGAGACTGC-AAAACATTTAACCTGGGACAA i macFas5.chr3 C 0 C 0 s papAnu2.chr3 122286572 168 - 180432695 aagaaaaatcaggaaatagaaattgaagaag-aaaacattagctTTTGTCAACCAAATAGA------AATTGCACAGTCTCTAAGCACATGAACTCTGTATTATTTGTACAGTATGTACCATATTTATGCTTCACAGGGTAAGGTAGAGACTGC-AAAACATTTAACCTGGGACAA i papAnu2.chr3 C 0 C 0 s chlSab2.chr21 121542606 168 - 127223203 AAGAAAAATCAGGAAATAGAAAATGAAGAAG-AAAACATTAGTTATTGTCAACCAAATAGA------AATTGCACAGTCTCCAAGCACATGAACTCTGTATTATCTGTACAGTATGTACAATATTTATGCTTCACAGGGTAAGGTAGGGACTGC-AAAACAGTTAACCTGGGACAA i chlSab2.chr21 C 0 C 0 s calJac3.chr8 20087617 161 + 128169293 AAGAAAAATCAGAAAATAAAACATAAAGAAGAAAAACATTAGCTATTGCCAACCAAATAAA------AACTGCACAATCTCTAAACCCATGAACTATGTATTATTTGTACAGCATATACAATGTTCATGCTTCCATGGGTGAGGCAGAGACTGCAAAAACATTTAAC--------- i calJac3.chr8 I 553 C 0 s canFam3.chr18 4108421 161 + 55844845 AAGAGAAATTAGAATATAGAAAATGAAGAAGAAAAATATTAGCTACTGTCAACCAACCAAAGACAATAATTGCATGATCTATGAGCACATAAATTCTGT----CTTCCACAGCATATCCAATGTTTATGCTTAGCAGGATGAG----AGGCTGC-AAAAAATTAAATTCT------ i canFam3.chr18 C 0 C 0 e rheMac3.chr3 124572183 580 - 198365852 M a score=84040.000000 s hg38.chr1_KI270765v1_alt 139735 52 + 185285 ATAAGAAAGAAAGGAAATTTTCACAATATATTAATATTACAGAAAATGTTGA- s panTro4.chr1_GL389091_random 161808 52 + 179278 AGAAGAAAGTAAGGAAATTTTCACAATATATTAATATTACAGAAAATGTTGA- i panTro4.chr1_GL389091_random C 0 C 0 s nomLeu3.chr17 44148386 52 - 99891981 ATAAGAAAGTAAGGACATTTTCACAATATATTAATATTATAGAAAATGTTGA- i nomLeu3.chr17 C 0 C 0 s macFas5.chr3 125024283 52 - 192294377 ATAAGAAAGTAAGGAAATTTTCACAATATATTAATATTATAGAAAATGTTGA- i macFas5.chr3 C 0 C 0 s papAnu2.chr3 122286740 52 - 180432695 ATAAGAAAGTAAGGAAATTTtcacaatatattaaaattatagaaaatgttgA- i papAnu2.chr3 C 0 C 0 s chlSab2.chr21 121542774 52 - 127223203 ATAAGAGAGTAAGGAAATTTTCACAATATATTAAAATTATAGAAAATATTGA- i chlSab2.chr21 C 0 C 0 s calJac3.chr8 20087778 35 + 128169293 -----------------GTTTCACAATGTATTAGAATTATAGAAAATGTTAA- i calJac3.chr8 C 0 C 0 s canFam3.chr18 4108582 50 + 55844845 ---AGCAACACTAGAAAATTTTGTGAAATATTAGTATTATAGAAAATTCTGGA i canFam3.chr18 C 0 C 0 e rheMac3.chr3 124572183 580 - 198365852 M e ponAbe2.chrUn 5696041 171 + 72422247 M a score=19602.000000 s hg38.chr1_KI270765v1_alt 139787 11 + 185285 ACTTAACAGTT------- s panTro4.chr1_GL389091_random 161860 11 + 179278 ACTTAACAGTT------- i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 5696215 11 + 72422247 ACTTAACAGTT------- i ponAbe2.chrUn M 171 C 0 s nomLeu3.chr17 44148438 11 - 99891981 ACTTAACAGGT------- i nomLeu3.chr17 C 0 C 0 s macFas5.chr3 125024335 11 - 192294377 ACTTAACAATT------- i macFas5.chr3 C 0 C 0 s papAnu2.chr3 122286792 11 - 180432695 ACTTAATAATT------- i papAnu2.chr3 C 0 C 0 s chlSab2.chr21 121542826 11 - 127223203 ACTTAATAATT------- i chlSab2.chr21 C 0 C 0 s calJac3.chr8 20087813 11 + 128169293 ACTTAACAGTT------- i calJac3.chr8 C 0 I 319 s canFam3.chr18 4108632 11 + 55844845 -------AGTTTTTTTTG i canFam3.chr18 C 0 C 0 e rheMac3.chr3 124572183 580 - 198365852 M a score=99756.000000 s hg38.chr1_KI270765v1_alt 139798 42 + 185285 AAGATACAAGTAGTGAAAAATGATAG----TATTTAAGGAGA-TCTA s panTro4.chr1_GL389091_random 161871 42 + 179278 AAGATACAAGTAGTGAAAAATGATAG----TATTTAAGGAGA-TCTA i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 5696226 43 + 72422247 AAGATACAAGTAGTGAAAAATGATAG----TATTTAAGGAGATTCTA i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr17 44148449 42 - 99891981 AAGATAAAAGTGGTGAAAAATCATAG----TATTTAAGGAGG-TCTA i nomLeu3.chr17 C 0 C 0 s macFas5.chr3 125024346 42 - 192294377 AAGATAAAAGTAGTGAAAAATGATAA----TATTTAAGGAGA-TCTA i macFas5.chr3 C 0 C 0 s papAnu2.chr3 122286803 42 - 180432695 AAGATAAAAGTAGTGAAAAATGATAG----TATTTAAGGAGA-TCTA i papAnu2.chr3 C 0 C 0 s chlSab2.chr21 121542837 42 - 127223203 AAGATAAAAGTAGTGGAAAATGATAG----TATTTAAGGAGA-TCTA i chlSab2.chr21 C 0 C 0 s calJac3.chr8 20088143 39 + 128169293 aaGATGAAAGCAATAAGAA---ATAT----TATTTAAGGGGC-TCTA i calJac3.chr8 I 319 C 0 s canFam3.chr18 4108643 46 + 55844845 AAAATCAAAACAGTGAGAAATGATAGATATTATTTAAAAAGA-TGTA i canFam3.chr18 C 0 I 888 e rheMac3.chr3 124572183 580 - 198365852 M a score=30437.000000 s hg38.chr1_KI270765v1_alt 139840 19 + 185285 GAAAATGTCATCCATACCA s panTro4.chr1_GL389091_random 161913 19 + 179278 GAAAATTTAATCTATATCA i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 5696269 19 + 72422247 GAAAATTTAATCTATATCT i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr17 44148491 19 - 99891981 GAAAGTTTAATTTATATCT i nomLeu3.chr17 C 0 C 0 s macFas5.chr3 125024388 19 - 192294377 GAAATATTAATCTATATCT i macFas5.chr3 C 0 C 0 s papAnu2.chr3 122286845 19 - 180432695 GAAATATTAATCTATATCT i papAnu2.chr3 C 0 C 0 s chlSab2.chr21 121542879 19 - 127223203 GAAATATTAATCTATATCT i chlSab2.chr21 C 0 C 0 s calJac3.chr8 20088182 19 + 128169293 GATAATTGAATCTACATCT i calJac3.chr8 C 0 C 0 e rheMac3.chr3 124572183 580 - 198365852 M e canFam3.chr18 4108689 888 + 55844845 I a score=485468.000000 s hg38.chr1_KI270765v1_alt 139859 169 + 185285 GTAATGTGTGAGAAGTATTAGAATAATGCTTGTATTTCTGGATTGGCATCGATTTCTATTGAGACTGGAAACATACTAGAAGTGAGCAAAAAAGAATTTAAATAGTGGATACTTGAGTTTTATACCTAGGAGTTCGAGAAATACATTTTGTTACTATCAAAGCAGTTGG s panTro4.chr1_GL389091_random 161932 169 + 179278 GTAATGTGTGAGAAGTATTAGAATAATGCTTGTATTTCTGGATTGGCATCGATTTCTATTGAGACTGGAAACATAATAGAAGTGAGCAAAAAAGAATTCAAATCGTGGATACTTGAGTTTTATACCTAGGAGTTCGAGAAATACATTTTGTTACTATCAAAGCAGTTGG i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 5696288 169 + 72422247 GTAATGTGTGAGAAGTATTAGAATAATGCTTGTATTTCTGGATTGGCATCGATTTCTATTGAGACTGGAAACATAATAGAAGTGAGGGAAAAAGAATTTAAATTGTGGATACTTGAGTTTTATACCTAGGAGTTCGACAAATACATTTTGTTACTATCAAAGCAGTTGG i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr17 44148510 169 - 99891981 GTAATGCATGAGAAGCATTAGAATAATGCTTGTATTTCTGGATTGGCATTGATTTCCATTGAGACTGGAAAGATAATAAAAGTGATGGAAAAAGAATTTAAATTGTGGATATTTGAGTTTTATACCTAGGAGTTCGAGAAATATATTTTGTTACTATCAAAGCAGTTGG i nomLeu3.chr17 C 0 C 0 s rheMac3.chr3 124572785 169 - 198365852 GTAATGTGTGAGAAGCATTAGAATAATGCTTTTATTTCTGGATAGGCATTGATTTCTATTGAGACTGGAAGCATAATAGAAGTGAGGGAAAAAGAATTTAAATTGTGGATATCTGAGTTTTATACCTAGGAGTTTGAGAAATATATTTTGTTACTATCAAAGCAGTTGA i rheMac3.chr3 M 580 C 0 s macFas5.chr3 125024407 169 - 192294377 GTAATGTGTGAGAAGCATTAGAATAATGCTTGTACTTCTGGATAGGCATTGATTTCTATTGAGACTGGAAGCATAATAGAAGTGAGGGAAAAAGAATTTAAATTGTGGATATTTGAGTTTTATACCTAGGAGTTTGAGAAATATATTTTGTTACTATCAAAGCAGTTGA i macFas5.chr3 C 0 C 0 s papAnu2.chr3 122286864 169 - 180432695 GTAATGTGTGAGAAGCATTAGAATAATGCTTGTATTTCTGGATTGGCATTGATTTCGATTGACACTGTAAACATAATAGAAGTGagggaaaaagaatttaaattgtgGATATTTGAGTTTTATACCTAGGAGTTcgagaaatatattttgttactATCAAAGCAGTTGA i papAnu2.chr3 C 0 C 0 s chlSab2.chr21 121542898 169 - 127223203 GTAATGTGTGAGAAGCATTACAATAATGCTTGTATTTCTGAATTGGCATTGATTTCTATTGAGACTGGAAACATAATAGAAGTGAGGGAAAAAGAATTTAAATTGTGGATATTTGAGTTTTATACCTAGGAGTTTGAGAAATATATTTTGTTACTATCAAAGAAGTTGA i chlSab2.chr21 C 0 C 0 s calJac3.chr8 20088201 157 + 128169293 GTAATGTTTGAAAAGCATTAG------------ATTTCTGGATTTGCGTTGATATCTATTGAGACTGGGAACATAATGGAAATGAAGGAAAAATCATTTAAATTGTGGATATTTGAGTTTTATATGTAGGAGTGTGAGAAATATATTTTGTTACTATCAAAGCAGTTGG i calJac3.chr8 C 0 C 0 e canFam3.chr18 4108689 888 + 55844845 I a score=1439303.000000 s hg38.chr1_KI270765v1_alt 140028 482 + 185285 CACAAGAGTGTACAAAATTCCCTAATTGTGTCTATGTGGTGAAGACATAGACAAACAGAAAATAGCAAAACAGAAATAGC----AAAAAA------GCACAAATAAA---TTTTACCTGTATTTTTACGTAAAAGCCAATTAGAGTAGGAAAACATGAAA-TTTGTGTTTTATCGAAATTTTTC------TCTTA---TAGTATGGTTGATTATATTACTGG-AAAAAAATTGAAGCATTGGTATGTTCAC---AAAAAAAAGTAAA-AGATAAGGTCAAAACC---------------------------------ATGGGAATGCAGGGAGCAGACAA--------AATACACCTAAACACTGATACTGATTTTGCCCTACGGACATGTAGCAAAATGAATGAGTGCAGA-TT-CCTATGGTCATACATCACATAGGACAGTAAAGAAAT-ACATAGTGTTTCCCAAGAT-AGGGCATCACACAGGAGCTCTTCCC-TAAAGCTAGCACCAAAATTTATCTCCTCAGTATAAAGAAGAATCAGAGGTAAATTAG s panTro4.chr1_GL389091_random 162101 473 + 179278 CACAAGAGTGTACAAAATTCCCTAATTATGCCTATGTGGTGAAGACATAGACAAACAGAGAATAGCAAAACAGAAATAGC----AAAAAA------GCACAAATAAA---TTTTACCTGTATTTTTATGTAAAAGCCAATTAGAGTAGGAAAACATGAAA-TTTGTGTTTTATCAAAATTTTTC------TCTTA---TAGTATAGTTGATTATATTACTGG-AAAAAAATTGAAGCATTGGTATGTTCACAAAAAAAAAAAGTAAA-ATATAAGGTCAAAACC---------------------------------ATGGGAATGCAGGGAGCAGAC---------------------ACACTGAAACTGATTTTGCCCTACGGACATGTAGCAAAATGAATGAGTGCAGA-TT-CCTACTGTCATACATCACATAGGACAGTAAAGAAATAACATAGTGTTTCCCAAGAT-AGGGCATCACACAGGAGCTCTTCCC-TAAAGCTAGCACCAAAATTTATATCCTCAGTATAAAGAAGAATCAGAGGTAAATTAG i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 5696457 486 + 72422247 CACAAGAGTGTACAAAATTCCCTAATTGTGTCTATGTGGAGAAGACATAGACAAACAGAGAATAGCAAAACAGAAATAGC----AAAAAA------GCACAAAAAAA---TTTTACCTGTATTTTTACGTAAAAGCCAATTAGAGTAGGAAAACATGAAA-TTTGTGTTTTATAAAAATTTTTC--TGTTTCTCA---TAATATAGTTGATTATATTACTGG-AAAAAAATGGAAGCATTGGTATGTTCAC---AAAAAAAAGTAAA-ATACAAGGTCAAAACC---------------------------------ATGGGAATGCAGGGAGCAGACAA--------AATATACCTAAACACCGAAACTGATTTTGCCCTATGGACATGTACCAAAATGAATGAGTGCAGA-TT-CCTACTGCCATACATCACATAGGACAGTAAAGAAAT-ACATAGTTTTTCCCAAGAT-AGGGCATCACACAGGAGCTCCTCCC-TAAAGCTAGAACCAAAATTTCTATCCCCAGTATAAAGAAGAATCAGAGGTAAATTAA i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr17 44148679 470 - 99891981 CACAAGAGTGTACAGAATTCCCTAGCTGTGGCTATGTGG---AGACATAGACAAACAGAGAATACCAAAACAGAAATAAC----AAAAAA------GCAGAAATAAA---TTTTACCTGTAT------GTAAAAGCCAATTAGAGTAGGAAAACATGAAA-TTTGTGTTTTATCAAAATTTTTC--TCTTTCTTA---TAATATAGTTGATTATATTACTGG--AAAAAATTGAAGCATTGGAATGTTCAC---ACAAAAAAGTAAA-ATATAAGGTCAAAACC---------------------------------ATGGGAATGCAGGGAGCAGACAA--------AA------TAAACACTGAAACTGATTTTGCCCTATGGACATGTACCAAAAAGAATGAGTGTAGA-TT-CCTACTTTCATACATCACATAGGACAGTAAAGAAAT-ATATAGTTTTTCCCAAGAT-AGGGCATCACACAGGAGCTCCTCCC-TAAAGCTAGGACCAAAATTTATATCCTCAGTATAAGGAAGAATCAGAGGCAGATTAG i nomLeu3.chr17 C 0 C 0 s rheMac3.chr3 124572954 486 - 198365852 CACTAGAGTGTACAAAACTCCCTAATTGCGGCTATGTGGAGAAGACATAGACAAACAGAGAATAGCAAAGCAGAAATAGC----AAAAAAAAGCACAAACAAATAAA---TTTTACCTGGAT------GTAAAAGCCAATTGGAGTAGGAAAACATGAAA-TTTGTGTTTTATCAAAATTTTTC--TCTTTCTTA---TAATATAGTTGATTATATTACTGG--AAAAAATTGAAGCATTGGTATGTTCAC---AAAAAAAGGTAAA-ATATAAGGTCAAAACC---------------------------------ATGGGAATGCAGGGAGCAGACAA--------AATATACCTAAACACCGAGACTGATTTTGCCCTACGGACATGTACCAAAATGAATGAGTGTGGATTT-CCTACTGTCATACATCACATAGGACAGTAAAGAAAT-ATATAGCTTTTCCCAAGAT-AGGGCATCACACAGGAGCTCCTCCC-TAAAGCTAGGACCAAAATTTATATTCTCAATATGAAGAAGAATCAGAGGTAAATTAG i rheMac3.chr3 C 0 C 0 s macFas5.chr3 125024576 486 - 192294377 CACTAGAGTGTACAAAACTCCCTAATTGCGGCTATGTGGAGAAGACATAGACAAACAGAGAATAGCAAAGCAGAAATAGC----AAAAAAAAGCACAAACAAATAAA---TTTTACCTGTAT------GTAAAAGCCAATTAGAGTAGGAAAACATGAAA-TTTGTGTTTTATCAAAATTTTTC--TCTTTCTTA---TAATATAGTTGATTATATTACTGG--AAAAAATTGAAGCATTGGTATGTTCAC---AAAAAAAGGTAAA-ATATAAGGTCAAAACC---------------------------------ATGGGAATGCAGGGAGCAGACAA--------AATATACCTAAACACCGAGACTGATTTTTCCCTACGGACATGTACCAAAATGAATGAGTGTGGATTT-CCTACTGTCATACATCACATAGGACAGTAAAGAAAT-ATATAGCTTTTCCCAAGAT-AGGGCATCACACAGGAGCTCCTCCC-TAAAGCTAGGACCAAAATTTATATTCTCAATATGAAGAAGAATCAGAGGTAAATTAG i macFas5.chr3 C 0 C 0 s papAnu2.chr3 122287033 486 - 180432695 CACTAGAGTGTACAAAATTCCCTTATTGCGGCTATGTGGAGAAGACATAGACAAACAGAGAATAGCAAAgcagaaatagc----aaaaaaaaaaaagcacaaataaa---tttTACCTGTAT------GTAAAAGCCAATTAGAGTAGGAAAACATGAAA-TTTGTGTTTTAtcaaaatttttc--tctttctta---taataTAGTTGATTATATTACTGG--AAAAAATTGAAGCATTGGTATGTTcac---aaaaaaaggtaaa-atataaggTCAAAACC---------------------------------ATGGGAATGCAGGGAGCAGACAA--------AATATACCTAAACACCGAAACTGATTTTGCCCTACGGACATGTACCAAAATGAATGAGTGTGAATTT-CCTACTGTCATACATCACATAGGACAGTAAAGAAAT-ATATAGCCTTTCCCAAGAT-AGGGCAACACACAGGAGCTCCTCCC-TAAAGCTAGGACCAAAATTTATATTCTCAATATGAAGAAGAATCAGAGGTAAATTAG i papAnu2.chr3 C 0 C 0 s chlSab2.chr21 121543067 486 - 127223203 CACTAGAGTGTACAAAATTCCCTAATTGCGGCTATGTGGAGAAGACATAGACAAACAGAGAATAGCAA---AAAAATAGCAAAAAAAAAAAAGCACAAAGAAATAAA---TTTTACCTGTAT------GTAAAAGCCAATTAGAGTAGGAAAACATGAAA-TTTGTGTTTTAACAAAATTTT----TCTTTCTTA---TAATATAGTTGATTATATTACTGG--AAAAATTTGAAGCATTGGTATGTTCAC--AAAAAAAAGGTAAA-ATATAAGGTCAAAACC---------------------------------ATGGGAATGCAGGGAGCAGACAA--------ACTATACCTAAACACCAAAACTGATTTTGCCCTACGGACATGTACCAAAATGAATGAGTGTGGATTT-CCTACTGTCATACGTCACATAGGACAGTAAAGAAAA-ATATAGCTTTTCCCAAGAT-AGGGCATCACACAGGAGCTCCTCCC-TAAACCTAGGACCAAAATGTATATTCTCAATATGAAGAAGAATCAGAGGTAAATTAG i chlSab2.chr21 C 0 C 0 s calJac3.chr8 20088358 470 + 128169293 -ACAACAGTATACAAAAGTCCCTAATTGTGGCTGTGTGGAGAAGACAT--------AGAGAATAGCAAAGCAGAAACAGC----AAAAAA------GCACAAATAAG---TTTTTCCTGTAT------ATAAAAGCCAATTAGAGTAGGAAAATATGAAA-TTTGCATTTTGTCAAAATTTTTC--TCTTTCTTA---AAATATAGTTGATTTTATTACTGG---TAAAATTGAAGCATTGGTATGCTCAC----AAAAAAAGTAAA-ATATAAAGTCAAAACT---------------------------------ATGGGAATGTAGGGAGCAGACAA--------AATATACCTAAACACTGAAACTGATTTTGTCCTACAGACATGTACCAAAATGAATGAGCATGGATTT-CCTACTGTCATACTTTACATAGGACAGTAAAGAAAT-ATATAGCTTTCCCCAAGGA-AGGGCATCACACAGGAGCTCCTTCCATAAAGCTAGGACGAAAATTAACATCCTCAGTATAAAGAAAAATCAGAGGTAAATTAG i calJac3.chr8 C 0 C 0 s canFam3.chr18 4109577 528 + 55844845 CAGAAAAGTATACAAAATTCCTTAAGTATGCCTGTGTGGAAAAGA-ATAAATGAGCAGAAAACGGAGGGGCAGAAATAGC----CAGA--------GCACAAAAAGAGATTTTTACTGGCAC------ATAAAAGCCAATGAGAGTAGGTAAATATGCGGTTTTGTGTTTTATCAAAATTTCTCTGTCTTTCTAATTCTGATATAGTTGACTCTGTGACTAGGAAAAAAAGAAAAGCATTAAGATTCTCAT-----AAAGTAGTAAATGTTTTAGGCCAAAGTCTGAATTCTTCAGGGACCaagagaaaaaaaaaaaaaaagaaagaaagaaaaagaaaaagaaaaagaaaaCAACCTCACACTGGAACTGGTTTTGCCCTAAAGACATGTACTAAACTGAATAGGTTTGACTTTGCTTAGTGTCATGCAGCAGATAGAATAATAAGCAAAT-ATTAAGCCTTTTCTAAGCTGAGAGCCACATAGAGGATCCTTTTCCATAAAG--AATTCTAAAGATTACA-CTTCATTGTAAAAATGAATCAGAAATAAATCAG i canFam3.chr18 I 888 I 151 a score=2479753.000000 s hg38.chr1_KI270765v1_alt 140510 840 + 185285 TCTCAT--------------------------------------TTCACATTCCCTGGAAATGGCAAATAAAAATGACTTGAGATTGGACAGATTTAAAGA-AACTCAATCATTAATGATTTACAGCAATTAATTTAAAAATTGTTTAAATGTGCTGTCCAAACATACgt-------------ccaaacacctttaggccaagaattaatataatgtggtcccagaatggtggtgcctttagtagactcac---aaaaaattcaaattctctttggcaaattttcttcttactaatatgcaaaagtgcacaataataattttcagagaaaaataaatctttgtcattcaaaggc-atctaagtacgcaaggaaatgatattccaccatttgaaaggaaagcagaaaaagagtacaaacagatccacagaggttc--attagtagaaatatcactgttagattataaagcacatttgcttt----caaaaaatttaaa--aaaaGGAATATATTTTTAGGAGACT-AAAAAGTTGATGTAGTAAATTTGAAAAGTAGTTTGTat------atagtattttaaattaaaaactcaaaaatgaactcatcagtttagacatggccatggtgagagctcat----------------------aaatatttcagaatgc-attacagaaaatttaaaaaaaggcacaatgtggacagaatcatgaagagacatggaag----atacagtgagaaagtgtagc---atgtgtttagtgtgtgttctcatagag----gaagggaacggggaagggacaatatgtgatggtattttggct-------------------gaaagttctccagagttttgtaagacactaatccacatattcaaaacttctatgcatgctaagcaagctacgatggagataaacctacatctacatatctcctagagaaat s panTro4.chr1_GL389091_random 162574 836 + 179278 TCTCAT--------------------------------------TTCACATTCCCTGGAAATGGCAAATAAAAATGTCTTGAGATTGGACAGATTTAAAGA-GACTCAATCATTAATGATTTACAGCAATTAATTTAAAAATTGTTTAAATGTGCTGTCCAAACATACGT-------------CCAAACACCTTTAGGCCAAGAATTAATATAATGTGGTCCCAGAATGGTGGTGCCTTTAGTAGACTCAC---AAAAAATTCAAATTCTCTTTGGCAAATTTTCTTCTTACTAATATGCAAAAGTGCACAATAATAATTTTCAGAGAAAAATAAATCTTTGTCATTCAAAGGC-ATCTAAGTACGCAAGGAAATGATATTCCGCCATTTGAAAGCAAAGCAGAAAAAGAGTACAAACAGATCCACAAAAGATC--ATTAGTAGAAATATCACTGTTAGATTATAAAGCACATTTGCTTT----Caaaaaattttaa--aaaatgaatatatttttaGGAGACT-AAAAAATTGATGTAGTAAATTTGAAAAGTAGTTTGTGt------atagtattttcaattaaaaactcaaaaatgaactcatcagattagacatggccatggtgggagttcat----------------------aaatatttcagaatgc-attacag-aaatttaaaaaaaggcacaatgtggacagaatcatgaagagacatggaag----atacagtgagaaagtgtagc---atgtgtttagtgagtgttctcata-------gaagggaactgggaagggacaatacgtgatggtattttggct-------------------gaaagttctctagacctttctaagacattaatccacatattcaaaacttctatgcatgctaagcaagctacaatggagataaacctacatctacatatctcctagagaaat i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 5696943 846 + 72422247 TCCCAT--------------------------------------TTCACATTCCCTGAAAACGGCAAATAAAAATGACTTGAGATTGGACAGATTTAAAGA-AACTCAATCATTAATGATTTACAGAAATTAATTTAAAAATTGTTTAAATGTGCAGTCCAAACATACgt-------------ccaaacacctttaggccaacaattaacataatgtggtcccagaatggtggtgcctttagtagactcac--aaaaaaattcaaattctctttggcaaattttcttcttactaatccacaaaagtgcacaaaaataattttcagagaaaaataaatatttgtcattcaaaggc-atctaagtacacaaggaaatgatattccatcatttgaaaggaaagcagaaaaagagtacaaacagatccacaaaggttc--attagtagaaatatca--gttagattataaagcacatttgcttt----aaaaaaatttaaaataaaatgaatatatttgtaggagact-aaaaaattgatgtagcaaatttgaaaagtagtttgtataaaaacatagtattttaaattaaaaactcaaaaatgaactcatcagattagacatggccatggtgagagttcat----------------------aaatatttcagaatgc-attacaaaaaatttttaaaaatgcaaaatgtggacagaatcatgaagagacatggaag----atacagtaagaaagtgtagc---atgtgtttagtgagtgttctcatagaa----gaagggaactgggaagggacaatatgtgatggta-tttggct-------------------gaaagttctctagacttttgtaagacactaatccgcatgttcaaaaattccatgcatgctaagcaagctacattggagataaacctacacctacgtatctcctagagaaat i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr17 44149149 846 - 99891981 TCCCAT--------------------------------------TTAACATTTCCTGCAAATGGCAAATAAAAATGACTTGAGATTGGACAGATTTAAAGA-AACTCAATCATTAATGATTTACAGCAATTAATTTAAATATTGTTTAATTGTGCGGTCCAAACATATgt-------------ccaaacacctttaggccaagaattaacataatgtggtcccagaatggtggtgcctttagtagactcac--aaaaaaattcaaattctctttggCAAATTTTTTTCCAAC-AATCCTCAAAAGTGCACAAAAATAATTTTCAAAGAAAAATAAATATTTGTCATTCAAAGGC-ATCTAAGTACACAAGGAAATGATATTCCACCATTTGAAAGCAAAGCAGAAAAAGAGTACAAACAGATCCACAAAGGTTC--ATTAGTAGAAATATCATTGTTAGATTACAAAGCACATTAGCTTT----AAAAAAATTTTTT--AAAA-AACCATATTTTTAGGGGACTAAAAAAATTGATGTAGCAAATTTGAAAAGTAGTTTGTGTaaaaatatagtattttaaattaaaaactcaaaaatgaactcatcagattagacatggccatggtgagagttaat----------------------aaatatttcagaatgc-attacagataatttaaaaaaatgcaaaatgtggacagaatcattaagagacatggaag----atgcagtgagaaagtgtagc---atgtgtttagtgagtgttctcatagaa----gaagggaactgggaagggacaatatgtgatggtattttggct-------------------gaaagttctctagatttttgtaagacactaatctgcatattcaagaattcaatgcttgctaagcaagctacagtggagataaacctacacctatgtatctcctagagaaat i nomLeu3.chr17 C 0 C 0 s rheMac3.chr3 124573440 851 - 198365852 TCCCAT--------------------------------------TTCACTTTCCCTGAAAATGGCAAATAAAAATGACTTGAGATTGGACAGATTTAAAGA-AACTCAATCATTAATGATTTACAGCAATTAATTTAAAAATTGTTTAAATGtgcagtccaaacatatgtcacttgggaagtccaaaacacctttaggccaagaattaacataatgtggtcccagaataggggtgcctttagtagactcat--gaaaaaattgaaattctctttggcatattttcctcatactaatcctcaaaagtgcacaaaaataattttctaagaaaaataaatatttatcattcaaaggc-ttctaagtacacaaggaaatgatattccactgtttgaaaggaaagcagaaaaagagtacaaacagatctgcaaaggttt--gttaccagaaatatcactgttagatcataaagcacatttgcttt-------aaaa--------aaaatgaacatattt-taggagactaaaaacatTGATGTAGCAAATCTGAAGAGTAGTTTGTATaaaaatacagtattttaaattaaaaactcaaaaatgaactcatcagattagaaatggccatggtgagagttaat----------------------aaatatttcagaatgc-attacagataacttggaaaaatgcaaaatgtggacagaatcattaaaagacatggaagttttttgcagtgagaaaatgcagc---atgtatttagtgagtgttctcata-------gaagggaactaggaagagataatatgtgatggtattttgact-------------------gaaagttctctagacttttgtaagacactaatccacatattcaaaaactcaacacatgctaagcaagttaca-tggagattaacctacacctaagtatctcatagaaaaaT i rheMac3.chr3 C 0 I 460 s macFas5.chr3 125025062 850 - 192294377 TCCCAT--------------------------------------TTCACTTTCCCTGAAAATGGCAAATAAAAATGACTTGAGATTGGACAGATTTAAAGA-AACTCAATCATTAATGATTTACAGCAATTAATTTAAAAATTGTTTAAATGTGCAGTCCAAACATATGTCACTTGGGAAGTCCAAAACACCTTTAGGCCAAGAATTAACATAATGTGGTCCCAGAATAGGGGTGCCTTTAGTAGACTCAT--GAAAAAATTGAAATTCTCTTTGGCATATTTTCCTCATACTAATCCTCAAAAGTGCACAAAAATAATTTTCTAAGAAAAATAAATATTTATCATTCAAAGGC-TTCTAAGTACACAAGGAAATGATATTCCACTGTTTGAAAGGAAAGCAGAAAAAGAGTACAAACAGATCTGCAAAGGTTT--GTTACCAGAAATATCACTGTTAGATCATAAAGCACATTTGCTTT----AAAAAAA--------AAAATGAACATATTT-TAGGAGACTAAAAACATTGATGTAGCAAATCTGAAAAGTAGTTTGTATaaaaatacagtattttaaattaaaaactcaaaaatgaactcatcagattagaaatggccatggtgagagttaat----------------------aaatatttcagaatgc-attacagataacttggaaaaatgcaaaatgtggacagaatcattaaaagacatggaag----ttgcagtgagaaaatgtagc---atgtatttagtgagtgttctcata-------gaagggaactaggaagagataatatgtgatggtattttgact-------------------gaaagttctctagacttttgtaagacactaatccacatattcaaaaactcaacgcatgctaagcaagttaca-tggagattaacctacacctaagtatctcctagagaaat i macFas5.chr3 C 0 C 0 s papAnu2.chr3 122287519 849 - 180432695 TCCCAT--------------------------------------TTCACATTCCCtgcaaatggcaaataaaaatgaCTTGAGATTGGACAGATTTAAAGA-AACTCAATCATTAATGATTTAcagcaattaatttaaaaattgtttaaatgtgCAGTCCAAACATATGTCACTTGGGAAGTCCAAAACACCTTTAGGCCAAGAATTAACATAATGTGGTCCCAGAATAGTGGTGCCTTTAGTAGActcac--aaaaaaattgaaattctcTTTGGCATATTTTCTTCATACTAATCTTCAAAAGtgcacaaaaataattttctaagaaaaataaatatttatcattcaaAGGC-TTCTAAGTACACAAGGAAATGATATTCCACCATttgaaaggaaagcagaaaaagagtaCAAACAGATCTGCAAAGGTTT--GTTACCAGAAATATCACTGTTAGATCATAAAGcacatttgcttt-----aaaaaa--------aaaatgaacatattt-taggAGACTaaaaaaaTTGACGTAGCAAATCTGAAAAGTAGTttgtataaaaatacagtattttaaattaaaaactcaaaaatgaaCTCATCAGATTAGACATGGCCATGGTGagagttaat----------------------aaatatttcagaatgc-aGTACAGATAATttggaaaaatgcaaaatgtgGACAGAATCATTAAAAGAcatggatg----ttgcagtgagaaAATGTAGC---ATGTATTTAGTGAGCGTTCTCACA-------GAAGGGAACTAAGAAGGGATAATATGTGATGATATTTTGACT-------------------GAAAGTTCTCTAGACTTTTGTAAGACACTAATCCACATATTCAAAAATTCAACACACGCTAAGTTAGTTACA-TGGAGATTAACCTACACCTAAGTATCTCCTAGAGAAat i papAnu2.chr3 C 0 C 0 s chlSab2.chr21 121543553 855 - 127223203 TCCCAT--------------------------------------TTCACATTCCCTGAAAATGGCAAATAAAAATGACTTAAGATTGGACAGATTTAAAGA-AACTCAATCATTAATGATTTACAGCAATTAATTTAAAAATTGTTAAAATGTGCAGTCCAAACATATGTCACTTGGGAAGCCCAAAACTCCTTTAGGCCAAGAATTAACATAATGTGGTCCCAGAATAGTGGTGCCTTTAGTAGACTCACA-AAAAAAATTGAAATTCTCTTTGGCATATTTTCTTCATACTAATCCTCAAAAGTGCACAAAAATAATTTTCTAAGAAAAATAAATATTTATCATTCAAAGGCTTTCTAAGTACACAAGGAAATGATATTCCACCGTTTGAAAAGAAAGCAGAAAAAGAGTACAAACAAATCTACAACGGTTT--GTGACCAGAAATATCACTGTTAGATCATAAAGCACATTTGCTTTAAAAAAAAAAA--------AAAATGAACATATTT-TAGGAGACTAAAAAAATTGATGTAGCAAATCTGAAAAGTAGTTTGTATaaaaatacagtattttaaattaaaaactcaaaaatgaactcatcagattagacatggccatgatgagagttaat----------------------aaatatttcagaatgc-attacagataatttggaaaaatgaaaaatgtggacagaatcattaaaagacatggaag----ttgcagtgag-aaatgtagc---atgtatttagtgagtgttctcaca-------gaagggaactaggaagggataatatgtgatggtattttgact-------------------gaaagttctctagacttttgtaagacactaatccacatattcaaaaattcaacgcatgctaagcaagttaca-tggagattaacttacacctaagtatctcctagagaaat i chlSab2.chr21 C 0 I 474 s calJac3.chr8 20088828 850 + 128169293 TTGCAT--------------------------------------TCCACATTCCCTGCAAATGGCAAATAAAAATGATTTGAGATTGGACAGATTAAAAGA-AAACCAATCATTAATGCTTTATGGCAATTAA-TTAGAAATGGTTTAAATGtgcagtccaaacatatgtcacttgggaagtccaaaacacctttaggccaatacttaacataatgtgatcccagaatggtggttcctttagtagactcac--aaagaaattcaaattctctttggCAAATTGTCTTCATACTAATTCTCAACAGTGCACATAAATAATTTTCTAAGAAAAATTAATATTTTTCATTCAAAAGC-ATCTGAGTACACAAGGAAATGATACTTCACCATTTGAAAGGAAAGCAGCAAAAGAGTATAAACAGCTCTATAAAGATTCCAGTTACTGGAAATACCACTGTTAGAATATAAAGCACATTTGCTTT----TAAAAAATATAC---CACATGAACATATTTTTAGGAGACT-AAAAAATTGGTGTAGCAAATTCAAAAAGTAATTTGTATAAAAATATAGTATTTTAAGTT-AAAACTCAATAATGAACTCGGCAGATTACACTCGGCAGTGGTGAGAATGAAT----------------------AAATATTTCGGAATGC-A-TACAGATAATTTGgaaa-------aatgtggacagaatcattaagagacatggaaa----atacagtgagaaagtgtagc---atgtgtttaattagtgttcttatcaaa----gaagggaactgggaagagacaatatgtgatggcattttgact-------------------gaaagttctccagacttttgtaagccactaatccacatattcaataattcaatgcatgctaagcaagctaca-tggagataaacctttacctaagtatctcctagataagt i calJac3.chr8 C 0 C 0 s canFam3.chr18 4110256 875 + 55844845 tctcatgaataaataaaatctttaaaaTCAATCAATCAACCCTATCAACACCGCCAGGAAATTGTAAGT-AAGTTGACTTAAAACTGAACAGATTAAAAGAGAAATAAATCATAAAGAATTAATAGCAG-CAATGTAGGCATTGTTTATATGTGCAGCCCAAACAT--GccacttgggaaatccaaaaaattcttaagtcaagaattagtataaggtggtcccagaacagtgatgtctttaagagactcacagaaacaaattcaaatcctctttgTTCAGTTGCC-----ACTAATCCTCAAAA-TGCAT----GCAATTTTCTAATAAAAATGAATGTTTGGCTTTCAAAAAT-CTCT------------AAATGATAGTCAATTTTT-----AAAAATCTGGAAAAATATATAAAAAA---CACAAAGAATTCAGTTACTGGAAACATTA---------------------TTACATT----------------------ATGAATATATCTTTAGGAGACTGATaaa--tgccctagcaaatttgaaaattaagttatttaaaaatataata-tttaagttaaaaaataaatgatggacctaacacatcagacaaagcaatg-caaaagttaacaaagtgcgacgtaagccaaagaaaatatttcagaatgcgattataggtaatttgagaagacacggtatttggatggaatcatcaga--atatagagg----ataatgtgagaaaaggttcccatctatatgtaatggatattctaatacaagaggaaaaaaaatggggaaaggacaatacttaaagatttttttaataaagttctctaggaaaaaaaaaagttatccaggcttttgagggacactaatctgcatattaaaaaactcaatcaattcaagccaagatgta-ggaaaacaaggctacatctcagtatctcatagtgaaat i canFam3.chr18 I 151 C 0 a score=14847.000000 s hg38.chr1_KI270765v1_alt 141350 10 + 185285 agtaaacaat s panTro4.chr1_GL389091_random 163410 10 + 179278 agtaaacaat i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 5697789 10 + 72422247 agtaaataat i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr17 44149995 10 - 99891981 agtaaacaat i nomLeu3.chr17 C 0 C 0 s macFas5.chr3 125025912 10 - 192294377 cgtaAGCAAT i macFas5.chr3 C 0 I 451 s papAnu2.chr3 122288368 10 - 180432695 cataaacaat i papAnu2.chr3 C 0 I 457 s calJac3.chr8 20089678 10 + 128169293 ggcaaacaat i calJac3.chr8 C 0 C 0 s canFam3.chr18 4111131 10 + 55844845 tgaaaatgac i canFam3.chr18 C 0 C 0 e chlSab2.chr21 121544408 474 - 127223203 I e rheMac3.chr3 124574291 460 - 198365852 I a score=84084.000000 s hg38.chr1_KI270765v1_alt 141360 90 + 185285 -----caggaagggaaaaatatttcaattagcactagaaa--aatcaaattacctTTAATCATATTGAAATCTG------------AAAGCATGAAATGTAAAATAAAC s panTro4.chr1_GL389091_random 163420 90 + 179278 -----caggaagggaaaaatatttcaattagcaccagaaa--aatcaaattacctttaatcatattgaaatctg------------aaagcatgaaaggtaaaataaac i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 5697799 90 + 72422247 -----caggaagggaaaaatatttcaattagcactagaaa--aatcaaattacctttaatcatattgaaatctg------------aaagaatgaaaggtaaaataaac i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr17 44150005 90 - 99891981 -----cagaaagggaaaaatatttcaattagcactagaaa--aatcaaaataccttaaatcatactgaAATCTG------------AAAGAGTGAAAGGTAAaataaac i nomLeu3.chr17 C 0 I 1806 s calJac3.chr8 20089688 86 + 128169293 -----cagcaagggacaaatattttaatgagcactag-aa--aatcaa---acctttaatcatatagaaatctg------------aaagaatggacggtaaaataaac i calJac3.chr8 C 0 C 0 s canFam3.chr18 4111141 109 + 55844845 aaggaagaaaagaaaaaaatactttcatcaggattaggaaataatcaaattacctttaatcatacagcaacctgacttcctaattaaaccaatgaaaagtaaaatatac i canFam3.chr18 C 0 C 0 e chlSab2.chr21 121544408 474 - 127223203 I e rheMac3.chr3 124574291 460 - 198365852 I e papAnu2.chr3 122288378 457 - 180432695 I e macFas5.chr3 125025922 451 - 192294377 I a score=269100.000000 s hg38.chr1_KI270765v1_alt 141450 317 + 185285 AATATTATTTGTTaagaataat--aatgccattctgaaattctcaaccaag-aaaaatattcatcaacctatgg-------ctaaatcacatatttagagac-aaaaaacaaaacaccaccagcagaattccactaaagaaactcaaaggaaactctga--aaacacgcttcagaaagattgaagttctgaaatcaaagaatgaacacagagcaaaatatattgtaaacataaagatagatcaaaatagaa---aattaggtgttgaaacaaaagaatatttaaaat--------------tagataagcactgcaatatgtatgttaggaagcaaattattagggc s panTro4.chr1_GL389091_random 163510 318 + 179278 aatattatttgttaagaataat--aatgccattctgaaattctcaaccaag-aaaaatattcatcaacctctgg-------ctaaatcacttatttagagacaaaaaaacaaaacatcaccagcaaaattccactaaagaaactaaaaggaagctctga--aaacatgctttagaaagattgaagttctgaaatcaaacaaagaacacagagcaaaatatattgtaaacatacagatagatcaaaatagaa---aattagctgttgaaacaaAAGGATATTTAAAAT--------------TAGATAAGCACTGCAATATGTATTTTAGGAAGCAAATTATAAGGGC i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 5697889 315 + 72422247 aatattatttgttaagaataat--aatgccattctgaaattctcaaccaag-aaaaatattcatcaacctatgg-------ataaataacatatttagagac-aaaaaa-aacacgccaccagcagaattccactaaagaaactaaagagaatctctga--aaacatgcttcagagaggttgaagttctgaaatcaaagaatgaacacagagcaaaatatattgtaaacatacagatagatt-aaataaaA---AGTTAGGTGTTGAAACaaaaagatatttaaaat--------------tagataagcactgcaatatgtatgttaggaagcaaattattagggc i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr17 44151901 317 - 99891981 AATATTTAAAAAaaagaataat--aatgccattctgagattctcaaccatg-aaaaatattcatcaacctatgg-------ctaaataaaatatttacagac-aaaaaccaaaatgccaccagcagaattccactaaagaaactaaaaaggaattctga--aaagatgcttcagaaaggttgaagttctgaaatcaaagaatgaacaaagagcaaaatatattgtaaacatacggatagatctaaataaaa---aattaagtgctgaaacaaAAAGATATTTAAAAT--------------TAGATAAGCACCGCAATATGTATGTTGGGAAGCAAATTATTAAGGC i nomLeu3.chr17 I 1806 C 0 s calJac3.chr8 20089774 305 + 128169293 aatattatttgctaagaataat--aatgccattttgaaattctcaactaagaaaaaatattaatcaacctatgg-------ctaaataaaatacttagagac-aagaaacaaaatgccaccagcagaactccacgacagaaa-------------ctga--aaagatgcttcagaaaggttgaagttctgaaatgaaagaacgaacaaagaacaaaaccgattgtaaatatacggatagatctaaataaaA---AATTAGATGTTGAAACTAAAAGATATTTAAAAT--------------TAGATAAGCACTGCAATATGTATGTTGAGAAGGAAATTATTACAGC i calJac3.chr8 C 0 C 0 s canFam3.chr18 4111250 331 + 55844845 aatatcatgggctgaaagaaaccaaatgtcattataga--ccccaaccaag-caaaatatccactggaccaggatccccccctaaa-----aattta------gactaacagaatgccatcagcagaatcacagttaag-aactccaaagaaactctgaacagatatacttcaaagaagtggaatttttgaattgaaagaatgaataaagagcaaaatattttgt-aatatatgaatagatcgaaatcaaaattATTTAGGTGTTAAAATTAAAAGATATTTAAAATGGGTACACAAAAAATGGGTACACATTATATTATATACATCAGAACTTTGATTAATTAGGC i canFam3.chr18 C 0 I 6301 e chlSab2.chr21 121544408 474 - 127223203 I e rheMac3.chr3 124574291 460 - 198365852 I e papAnu2.chr3 122288378 457 - 180432695 I e macFas5.chr3 125025922 451 - 192294377 I a score=34820.000000 s hg38.chr1_KI270765v1_alt 141767 47 + 185285 tgaagtattcaaagaccccttaattgtctgacaagagcagaaag----gta s panTro4.chr1_GL389091_random 163828 47 + 179278 TGAAGTATTCAAAGACCCTTTAATTGTCAGACAAGAGCAGAAAG----GTA i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 5698204 51 + 72422247 tgaagtattcaaagaccccttaattgtctgacaagagcagaaaggtgagta i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr17 44152218 51 - 99891981 TGAAGTATTCAAAGACCCCTTAATTGTCCGACAAGAGCAGAAAGGTAAGTA i nomLeu3.chr17 C 0 C 0 s calJac3.chr8 20090079 46 + 128169293 TGAAGTATT-AAAGATCCCTTAATTGCCTGGCCAGAGCAAAAAG----GTA i calJac3.chr8 C 0 I 1330 e chlSab2.chr21 121544408 474 - 127223203 I e rheMac3.chr3 124574291 460 - 198365852 I e canFam3.chr18 4111581 6301 + 55844845 I e papAnu2.chr3 122288378 457 - 180432695 I e macFas5.chr3 125025922 451 - 192294377 I a score=293714.000000 s hg38.chr1_KI270765v1_alt 141814 628 + 185285 tgactttgcaactc--ttttttttttttttttttgagaaggagtctcattcaccctttctcccaggctggagtatggtggcgtcatctctgctcactgcaacctctgcctcccaggttcaagcaattctcctgcctcagcctcctgagtagcggggattacagccgcgtgccaccctgcctggctaatttttgtatttttagtagagacggggtttcaccatgttgatcaggctagtctccaactcctgacctcgtgatccacacgcctcggcctcccgaagtgttgagattacaggcgtgagccactgcgcgcgaccgactttggaactttaataaattgactggacattatgcatttctctgttgtatctatgaaaacaataaaaataaaagtcataattttaaaacaagaagacagaaagtgataggagaaaatgagacattatatatatatatatatatatacacaacaaattactaatacaaaattaagtataaatgatcaaagatta------acttaaacctaagtagacaatgtttttgttaaaatacaaagattggcaaaatttaaaacatccgtctctatcatagttacaagagacacaactaatatataaatttacagaaacttt s panTro4.chr1_GL389091_random 163875 627 + 179278 TGACTTTGCAACTC-tttttttttttttttttttgagaaggagtctcattcagtctttctcccaggctggagtgaggtggcgtcatctccgctcactgcaacctctgcctcccaggttcaagcaattctcctgcctcagcctcctgagtagcagggattacagctgcgtgccaccatgcctggctaatttttgtatttttagtagagacggggtttcaccatgttggtcaggctagtctccaactcctgacctcgtgatccacacgcctcggcctcccgaagtgttgagattacaggcgtgagtcactgcgAGCCACCGACTTTGGAACTTTAATAAATTGACTGGACATTATGCATCTCTCTGTTGTATCTATgaaaacaataaaaatgaaagtcataattttaaaacaaagagacagaaagtgataggagaaaatgagacat--tatatatatatatatctatacacaacaaattaataatacaaaattaagtataaatgatcaaagatta------acttaaacctaagtagacaatgtttttgttaaaatacaaagattggcaaaatttaaaacatccgtttctatcatagttacaagagacacaactaatatataaATTTACAGAAACTTT i panTro4.chr1_GL389091_random C 0 I 2518 s ponAbe2.chrUn 5698255 620 + 72422247 tgactttgcaacttttttttttttttttttttttgagaagaagtctcactcactgtttcgcccaggctggagtgcagtggcgccatctcggctcactgcaacccctgcctcccaggttcaagcaattctcctgcctcagcctcctgagtagcggggattacagccgcgtgccaccatgcctggctaatttttgtattttcagtagagacagggtttcaccatgttggtcaggctagtctccaactcctgacctcgtgatccacacgcctcggcctcccgaagtgttgagattacaggcgtgagccactgcgcgcgaccgactttggaactttaataaattcactggacattatgcatttctctgttgtagctatgaaaacaataaaaataaaagtcataatttaaaaacaagaagacagaaactgataggagaaaatgaggcat--------tatatatatatacacacaacaaattaataaaac-aaattaagtataaatgatcaaagatta------acttaaacctaagtagataatgtttttgttaaaatacaaagattagcaaaa-ttaaaaaatccgtctctatcatacttacaagagaggcaactaatacataaattttcagaaacttt i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr17 44152269 616 - 99891981 TGACTTTGCAACtt------ttttttttttttttgagacggagtctcactcactctgtcgcccagactggagtgcagtggcatgatctcggctcactgcaacctctgtctcccaggttcaagcaattctcctccctcagcctcttgagtagcagggattacagccgcgtgccaccatgcccggctaatttttgtatttttagtagagacagggtttcaccatgttggtcaggctggtctccaactcctgacctcgtgatccacatgcctcagcctccagaagtgctgagattacaggcgtgagccactgcgcgtgaccGACTTAGGAACTTTAACAAATTCACTGGACATTATGCATTTCTCTGTTGTATCTATGAAAACAATAAAAATAAAAGTCATAATTTAAAAACAAGAAGAC--AAACTAATAGGAGAAAATGAGACat------aatatatatatatatataCAACAAATGAA------AAAACAAAGtataaatgatcaagtataaatgtctacttaaacataagtagacaatgtttttgttaaaatacaaagattggcaacattaaaaaaattcacctctatcatagttacaatagcggcaactaatatataaatttacagaaacttt i nomLeu3.chr17 C 0 C 0 e calJac3.chr8 20090125 1330 + 128169293 I e chlSab2.chr21 121544408 474 - 127223203 I e rheMac3.chr3 124574291 460 - 198365852 I e canFam3.chr18 4111581 6301 + 55844845 I e papAnu2.chr3 122288378 457 - 180432695 I e macFas5.chr3 125025922 451 - 192294377 I a score=43283.000000 s hg38.chr1_KI270765v1_alt 142442 167 + 185285 gaagttcaaacaatacagatactgtgtatatatgatatacatacaaacatactacatgaatataattttttaaaaagttgctatgtagaccaaatagaatgtaagttagaaacatttattaaaataagttagtgtaaccagtgtgataaaagttttaagttattaag s ponAbe2.chrUn 5698875 167 + 72422247 gaagttcaaacaatatagatagtatgtatatatgatatacatacaaacataccacgtgaatacaattttttaaaaagtcgctatgtagacaaaatagaatgtaagttagaaacatttattaaaataagttagtctaaccagtgtgataaaagttttaagttattaag i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr17 44152885 167 - 99891981 gaagttcaaacaatacagatactgtgtatatatgatatacatataaacatactacatgaatataattttttaaaaagttgctatgtagacaaaatagaatgtaaattagaaacatttattaaaataagttagtctaaccagtgtgataaaagttttaagttattaag i nomLeu3.chr17 C 0 C 0 e calJac3.chr8 20090125 1330 + 128169293 I e chlSab2.chr21 121544408 474 - 127223203 I e rheMac3.chr3 124574291 460 - 198365852 I e canFam3.chr18 4111581 6301 + 55844845 I e papAnu2.chr3 122288378 457 - 180432695 I e macFas5.chr3 125025922 451 - 192294377 I e panTro4.chr1_GL389091_random 164502 2518 + 179278 I a score=208462.000000 s hg38.chr1_KI270765v1_alt 142609 440 + 185285 aagatgtgatgacttcaatgtgtattagcctgataCATACATATATATATacacacaaaccacacactctctctcacacacacagacacacacGTATTTAGagagagagtcaaattatataaagcaaaaatatcagaaagtaagtagaaatggataagcccccaaat-attatagacatttcaaacacacgtctttcagtaatagataaaagaaaaaattaaaagagtaagttttaaaagaagctagtggattttaaaacgggcaaatattatataaggaacttgaATATTATaattcatgttattttcatgttcatacagaatacttacaaaaattaacattttctagaccataccacaaattcaaacaattttcacggaaataacgtgacacagaatatatgtcctaaacaaacagcaatgaaggcagatatcaataca s panTro4.chr1_GL389091_random 167020 434 + 179278 aaGATGTGATGACTTAAATGTGCATTAGCCTGatacatacatatatata--cacacaaaccacacactctctc--acacacacagacacTcacgtatttagagagag--tcaaattatataaagcaaaaatatcagaaagtaagtagaaatggataagcccccaaat-attatagacatttcaaacacacgtctttcagtaatagataaaagaaaaaattaaaagagtaagttttaaaagaagctagtggattttaaaaagggcaaatattatataaggaacatgaatattataattcatgttattttcatgttcatacagaatacttacaaaaattaacattttctagaccataccacaaattcaaacaattttcacggaaataacgtgacacagaatatatttcctaaacaaacagcaatgaaggcagatatcaataca i panTro4.chr1_GL389091_random I 2518 C 0 s ponAbe2.chrUn 5699042 436 + 72422247 aagatgtgatgacttaaatgtgcatTAGCCTGATacatatatacatatatacacacacactacacactctctctcacacac----acacacacGTATTTAGagagagagtcaaattatataaagcaaaaatatcagaaagtaagtagaaatggataagcccccaaatcaatatagacatttcaaacacacatctttcagtaatagatacaagaaaaaattaaaagagtaagttttaaaagaagctagtggattttaaaaa-ggcaaatgttatataaggaacatgaatattataattcatgtcattttcatgttcatacagaatacttacaaaaattaacattttctagaccataccacaaattcaaacaattttcacggaaataacgtgacacagaatgtatttcctaaacaaacagcaatgaaggtagatagcaataca i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr17 44153052 418 - 99891981 aagatgtgatgacttaaatgtgcattagcctgacaCATATATACATACATacacacacac---------------acacac----acacacacaTATTTagagagag--tcaaattatat--agcaaaaatatcagaaagtaagtagaaatggataagcccccaaatcattatagacatctcaaacacacatctttcagtaatagataaatgaaaaaatttaaagagtaagttttaaaagaagctagtggattttaaaaagggcaaatgttatatatggagcacgaatattataattaatgttattttcatgttcatacagaatacttacaaaaattaacattttctagaccataccacaaattcaaacaattttcgcagaaataacatgacacagaatatatttcctgaacaaacagcaatcaaggtagatatcaataca i nomLeu3.chr17 C 0 C 0 e calJac3.chr8 20090125 1330 + 128169293 I e chlSab2.chr21 121544408 474 - 127223203 I e rheMac3.chr3 124574291 460 - 198365852 I e canFam3.chr18 4111581 6301 + 55844845 I e papAnu2.chr3 122288378 457 - 180432695 I e macFas5.chr3 125025922 451 - 192294377 I a score=418109.000000 s hg38.chr1_KI270765v1_alt 143049 644 + 185285 aaaacgaaagttagaaaCA-----TAAGTGTAATAA------------TATTGGTTGGAAGCCATTTTATTGAATATTGAAATATTTTAAAGGTGAATAGTCA----CTACAAATAAACCAAACACTTTTGTGAGGCCACTAAGATGCATGTGTAATGTGTAATGCCTCCTTTTATAAGGAGTAAATCTGTAACATCACCTGGGCTATTTGACAACTGCAAAGTGAATGTG-------------------------------------------------------------------------------------------------AGAAGGAGAGAAACAGTGAGAGAGAGagagataaa-agcagtaaaataaacataaagaatgaaggagatagccaggcgccattgt---tcacgcctgtaatcccagcactttgggaggccgaggcaggtgggtcacctgaggtcaggagttcgagaccagcctggtctaacatggtgaaacccactctctactaaatatacaaaaattagcctggcatggtggcatgcatctgtaaccccagctactcgggaggctgaggtgggagaattgcttgaacgtggggggtggaagttgcagtgagtagagatcacgcgactgcactccagcttgggcgacagagcaagactccgtgtcagaaaaaaa-----aacccaaaaaacaagaaagaaaaaaacgaggaaatagtacacgaaaaagcag-aattaaagcaactgggtatata s panTro4.chr1_GL389091_random 167454 649 + 179278 aaaacgaaagttagaaaCA-----TAAGTGTAATAA------------TATTGGTTGGAAGCTATTTTAATGAATATTGAAATATTTTAAAGGTGAATAGTCA----ATACAAATAAACCAAACACTTTTGTAAGGCCACTAAGATGCATGTGTAATGTGTAATGCCTCCTTTTATAAGGAGTAAATCTGTAACATCACCTGGGCTATTTGACAACTGCAAAGTGAATGTG-------------------------------------------------------------------------------------------------AGAAGGAGAGAAACAGTGAGAGAGAGAGACATAAA-ACCagtaaaataaacataaagaataaaggagatagccaggcgccattgt---tcatgcctgtaatcccagcactttgggaggccgaggcaggtggatcacctgaggtcaggagttcgagaccagcctggtctaacatggtgaaacccactctctactaaatatacaaaaattagcctggcatggtggcatgcatctgtaatcccagctactcgggaggctgaggtgggagaattgcttgaacgtggggggtggaagttgcagtgagtagagatcacacgactgcactccagcttgggcgacagagcaagactccgtgtcaaaaaaaaacaaaaaaaacaaaaaacaaaaccgaaaaaaacgaggaaatagtacaagaaaaagcag-aattaaagcaactgggtatata i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 5699478 606 + 72422247 aaaaagaaagctagaaaCA-----TAAGTCTAATAA------------TATTGGTTGGAAGCTATTTTAATGAATATTGAAATATTTTAAAGGTGAATAGTCA----ATACAAAT-----GAACACTTTTGAAAGGCCACTAAGATGCATGTGTAATGTGTAATGCCTCCTTTTATAAGGAGTAAATCTGTAACATCACCTGGGCTATTTGACAACTGCAAAGTGAATGTG----------------------------------------------------------------------------------------------------AGGAGAGAAACGGT----GAGAGAGACATAAA-ACCagtaaaataaacataaagaatgaaggaaatagccaggcgccatggt---tcacgcctgtaatcccagcactttgggaggccgaggcaggtggatcacctgaggtcaggagttcgagactagcctggtccaacatggtgaaacccactctctactaaatatacaaaaattagcctggcatggtgacatgcacctgtaatcccagctactcgggaggctgaggtgggagaattgcttgaacgtgggggctggaggttgcagtgagttgagagtacgccactacactccagcttgtgcaacagagcaagactccg---------------------actaaaaac----------aaaaggaggaaatagtacatgaaaaagcag-aagtaaagcaactgactatata i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr17 44153470 631 - 99891981 aaaaagaaaactagaaaCAT----TAAGTCTAATAA------------TATTGGTTGGAAGCTATTTTAATGAATATTGAAATATTTTAAAGGTGAATAGTCA----ATACAAATGAACCAAACACTTTTGTAAGGCCACTAAGATGCATGTGTAATGTGTAATGCCTCCTTTTATAAGGAGTAAATCTGTAACATCACCTGGGCTATTTGACAACTGCAAAGTGAATGTA-------------------------------------------------------------------------------------------------AGAAGGAGAGAAACAGTGAGAGAGAGagagataaa-accactaaaataaacataaagaatgaacgaaatagccaggcgccatggt---tcatgcctgtaatcccagcactttgggaggctgaggcaggtggatcacctgaggtcaggagttcgagaccagcctggtccaatatggtgaaacccgctttctactaaagatacaaaaattagccttgtgtggtggcatgcacctgtaatcccagctactggagacgctgaggtggtagaattgcttaaatctgggaggtggaggttgcagtgagtagagatcacgccactgcactcaagcttgggcgacagagcaagactccatctcaaaaaaaaa-------------aaat-------aaataaaggaggaaatagtacatgaaaaagcagaaattaaagcaactgagtatata i nomLeu3.chr17 C 0 C 0 s calJac3.chr8 20091455 749 + 128169293 AGAAAGAAAGCTAGAAACATCACATCAGTCTAATAAAATGGGTAATAGTATGGGTTAGAAGCCATTTTAATGAATAGTGCAATATTTTAAAGGTGAATATTTAATGCATACAAATGAACCAAACACTTGTGTAACGCCACTAAGATGCATTTGTGATACATAATGC-------TATAAGCAGTAAATCTGCAACATCACTTGGGCTGCTCCACAACTACAAAGTGAATATGAGAGAGAAACTGAGAGAGACAGAATCTGGGATGGGGGAAGAGCAagagagagaaagaggggagggagagagagagagagagagagagcgaaagagagagagagagagagagagagagagagagagagagaAATACCAGTAAAACAAGCATAATGAAGGAAATAGGAggccggaaacagtggctcatcatgcctgtaataccagcactttgggaggctgaggctggcagatcacttgaagtctggagttcgagactagcctcgttcaacatggtgaaactctgcctctacgaaaaatacaaaatttagccaggcgtggtggtgcaggcctgtaatcccagctactcaggaggctgagggaagagaatcgtttcaacccaggaggcagaggttgctctgagccaagatcacaccactgcactccagcctgggagacagagtgagattctgtctcaaaaaaaaa--------aaaaaaaa--------aaagaaTTAATTAAATAATACATAAAGAGGCAGTAATTAGAACAACTGACCATATG i calJac3.chr8 I 1330 C 0 e chlSab2.chr21 121544408 474 - 127223203 I e rheMac3.chr3 124574291 460 - 198365852 I e canFam3.chr18 4111581 6301 + 55844845 I e papAnu2.chr3 122288378 457 - 180432695 I e macFas5.chr3 125025922 451 - 192294377 I a score=2075812.000000 s hg38.chr1_KI270765v1_alt 143693 775 + 185285 tttaaaaatgcaaaagctcactttttcagaaaaatattaaaatattaaatctaacaaatatctaggtagactgatggagaaaaatacagaaaatgcacaaaaaagcaattacctggaatgCGAACGTTACAAAACGTCAGC---AGTTGTAGATTTTAAATAAGCAATGATTTTTGAGTTCAACCATGATGGGGTATATTGAAAAGAATCTCTCAGAAA-A-----AAAGAAAAAGAAAACTGTTATAAAGCTATGTACAAAATGTTAAGCACTATTAAAGTCTTCCAAATCTACCAGTTACGGAGTTATTGGTCTTGGACTAACACTCCTGAAAAGAAAAA-----AACCAAACAAAATAAGACAATACCTAA-----------AAACCTGGATAAAATGGCCTACCGTGGGCACTGGCAATGCATCCAAGCAGGTAGGACCT-GGGTGCTACAttctctttgtcagaacacaaagcattcatacactcttctcaccctcactttcaccttttaatctttgatctactattaaatgtattcaacattact-------atcaatcctttgctcaaaatttctttactcacattttgcttgatgcacttggatagactgttcaagaaagtgtgagtagtgaattcctcaaactcttgcatattcaaaatcacatttttgaacctcgatgctt-gaagtgtagcttggGTAACAGATGGGCTTTAAGCCAATTTTGGCATGCAAGGGGTTGAGTTTATTAGGCATCAGCACCGCTG-AAAATCGTGGGGATGCAGGCTTAATTTCAACACTA s panTro4.chr1_GL389091_random 168103 775 + 179278 tttaaaaatgcaaaagctcactttttcagaaaaatattaatatattaaatctaacaaatatctaggtagactgatggagaaaaatacagaaaatgcacaaaaaaacaattacctggaatgCGAACGTTACAAAACGTCAGC---AGTTGTAGATTTTAAATAAGCAATGATTTTTGAGTTCAACCATGATGGGGTATATTGAAAAGAATCTCTCAGAAA-A-----AAAGAAAAAGAAAACTGTTATAAAGGTATGTACAAAATGTTAAGCACTATTAAAGTCTTCCAAATCTGCCAGTTACGGAGTTATTGGTCTTGGACTAACACTCCTGAAAAGAAAAA-----AACCAAACAAAAGAAGACAAAACCTAA-----------AAATGTGGATAAAATGGCCTACCGTGGGCACTGGCAATGCATCCAAGCAGGTAGGACCT-GGGTGCTACAttctctttgtcagaacacaaagcattcacacactcttctcaccctcactttcaccttttaatcttagatctactattaaatgtattcaacattact-------atcaatcctttggtcaaaatttctttactcacattttgcttgatgcacttggatagactgttcaagaaagtgtgagtagtgaattcctcaaactcttgcatattcaaaatcacatttttgaaccttgatgctt-gaagtgtagcttCGGTAACAGATGGGCTTTAAGCCAATTTTGGCATGCAAGGGGTTGAGTTTATTAGGCATCAGCACCGCTG-AAAATCGTGGGGATGCAGGCTTAATTTCAACACTA i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 5700084 784 + 72422247 tttaaaaatgcaaaagctcactttttcagaaaaatattaaaatattaaatctaagaaatatctaggtagactgacagagaaaaatacacaaaatgcacaaaaaaacaattacctggaatgcgaaggatacaaaacgtcagc---agttgtagattttaaaTAAGCAATGA-CTTTGAGTTCAACCATGATGGGGTATATTGAAAAGAATCTCTCAGAAA-A-----AAAGGAAAAGAAAACTGTTATAAATCTATGTACAAAATGTTAAGCACTATTGAAGTCTTCCAAATCTAGCAGTTATGGAGTTATTGGTCTTGGACTAACTCTCCTGAAAAGAAAAA-----AACAAAACAAAACAAAA-AAACCCTAAAAACCTGGATCAAACCTGGATAAAATAGCCTACTGTGGGCACTGGCAATGCAACCGAGCAGGTAGGACAT-GGGTGCTACAttctctttgtcagaacacgaagcattcatacactcttctcaccctcactctcaccttttaatcttagatctactattaaatgtattcaacattact-------atcaatcctttggtcaaaatttctttactcacattttgcttgatgcacttggatagactgttcaagaaagtgtgagtagtgaattcctcaaactcttgcatatttaaaattagatttttgagccttgatgctt-gaagtgtagcttggGTAATGGATGGGCTTTAAGCCAATTTTGGCATGCAATGGGTAGAGTTTACTAGGCATCAGCACCTCTG-AAAATCGTGGGGATGCAGGCTTAATTTCAACACTA i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr17 44154101 776 - 99891981 tttaaaactgcaaaagctcactttttcagaaaaatattaaaatattaaatctaacaaatatctaggtagactgatggagaaaaatacagaaaatgcacaaaaaaccaattacctggaatgagaaGCATACCAAACATCAGC---AGTTGTAGATTTTAAATAAGCAGTGA-CTTTGAGTTCAACCATGGTGGGGTATATTGAAAATAATCTCTCAGAAA-A-----AAAGAAAAAGAAAATTGTTATAAAGATATGTACAAAATGTTAAGCACTATTAAAATCTTCCAATTCTATCAGTTATGGAGTTATTAGTCTTGGACTAACTCTCCTGAAAAGAAaaacaaacaaacaaacaaacaaaaaacaaacCTAA-----------AAACCTGGATAAAATAGCCTACCGTGGGCACTGACAATGCAACCAAGCAGGTAGGACAT-GGGTGCTACAttctttttgtcagaacacgaagcattcatacactcttctcaccctcactctcatcttttaatcttagatctactattaaacgtattcaacattact-------atcaatcctttg-tcaaaatttctttactcacattttgcttgatggacttggatagactgtt-aagaaagtgtgagtagtgaattcctcaaactcttgcatatttaaaattacttttttgaaccttgatgctt-gaagtgtagcttggGTAACAGATTGGCTTTAAGCCAATTTTGGTATGCAAGGGGTTCAGTTTATTAAGCATCAG-ACCTCTG-AAAATCATGGGGATGCAGGATTAATTTCAACACTA i nomLeu3.chr17 C 0 C 0 s rheMac3.chr3 124574751 761 - 198365852 TTTAAAAATTCAAAAACTCACTttctcagaaaaatattaaaatattaaatctaacaaatatctaggtaggctgatggagaaaaatagagaaaatgcacaaataaccaattacctggaatgcgaaggatacaAAATGTCAGC---AGCTGTAGATTTTAAATACGCAGTGA-CTTTGAGTTCAACCATGATGGGGTATATTGAAAAGAATCTCTCAAAAACAAAAAGAAAAGAAAAGAAAACTGTTATAAAGTAATGTACAAAATGTTAAGCACTATTAAAGTCTTCCAGTTCTACCAGTTATGGAGTTACTGATCTTGAACTAACTCTCCTGCAAAGAAAAA-----A-------------------AACTTAA-----------AAACCCGGATAAAATAGCCTACTGTGGGCACTGGCAATGCAACCAAGCAGGTAGGACAT-GTGTACTACAttctctttgtcagaacatgaagcattc-tacactcttcccaccctcactctcaccttttaatctcagatctactattaaatatgttcaacattact-------atcaatcctttggtcaaaatttctctactcacattttgcttgatgcacttggatagactgttcaagaaagtgtgagtagcgaattcctcaaactcttgcatatttaaaattacacttttgaaccttgatgctt-gaagtgcagcttggGTAACAGGTTGGCTTTAAGCCGATTTTGAGCTTCAAGGGGTTGAGTTTATTAGGCTTCAGCATCTCTGAAAAAACGTGTGGATGCAGTATTAATTTCAACCCTA i rheMac3.chr3 I 460 C 0 s macFas5.chr3 125026373 756 - 192294377 TTTAAAAATTCAAAAACTCACTTTCTCAGAAAAATATTAAAATATTAAATCTAACAAATATCTAGGTAGGCTGATGGAGAAAAATAGAGAAAATGCACAAATAACCAATTACCTGGAATGCGAAGGATACAAAATGTCAGC---AGCTGTAGATTTTAAATACGCAGTGA-CTTTGAGTTCAACCATGATGGGGTATATTGAAAAGAATCTCTCAAAAACA-----AAAAGAAAAGAAAACTGTTATAAAGCTATGTACAAAATGTTAAGCACTATTAAAGTCTTCCAGTTCTACCAGTTATGGAGTTACTGGTCTTGAACTAACTCTCCTGCAAAGAAAAA-----A-------------------AACTTAA-----------AAACCCGGATAAAATAGCCTACTGTGGGCACTGGCAATGCAACCACGCAGGTAGGACAT-GTGTACTACAttctctttgtcagaacatgaagcattc-tacactcttcccaccctcactctcaccttttaatctcagatctactattaaatatgttcaacattact-------atcaatcctttggtcaaaatttctctactcacattttgcttgatgcacttggatagactgttcaagaaagtgtgagtagcgaattcctcaaactcttgcatatttaaaattacacttttgaaccttgatgctt-gaagtgcagcttggGTAACAGGTTGGCTTTAAGCCGATTTTGAGCTTCAAGGGGTTGAGTTTATTAGGCTTCAGCATCTCTGAAAAAACGTGTGGATGCAGTATTAATTTCAACACTA i macFas5.chr3 I 451 C 0 s papAnu2.chr3 122288835 766 - 180432695 tttaaaaattcaaaaactcactttctcagaaaaatattaaaatattaaatctaacaaatatCTAGGTAGACTGatggagaaaaatagagaaaatgcaCAAATAACCAATTAACTGGAATGCGAAGGATACAAAATGTCAGC---AGCTGTAGATTTTAAATACGCAGTGA-CTTTGAGTTCAACCATGATGGGGTATATTgaaaagaatctctcaaaga-a-----aaagaaaaagaaaactgttataAAGCTATGTACAAAATGTTAAGCACTATTAAAGTCTTCCAGTTCTACCAGTTATGGAGTTATTGGTCTTGAACTaattcttctgaaaaaaaaag-----a--------aaata-aaaacaacttaa-----------aaatctggataaaaTAGCCTACTGTGTGCACTGGCAATGCAACCAAGCCGGTAGGACAT-GTGTACTACATTCTCTTCGTCAGAACATGAAGCATTCATACACTCTTCCCACCCTCACTCTCACCTTTTAATCTTAGATCTACTATTAAATACGTTCAACATTACT-------ATCAATCCTTTGGTCAAAATTTCTCTACTCACATTTTGCTTGATGCACTTGGATAGACTGTTCAAGAAAGTGTGAGTAGTGAATTCCTCAAACTCttgcatatttaaaattacactttTGAACCTTGATGCTT-GAAGTGCAGCTTGGGTAACAGGTTGGCTTTAAGCCGATTTTGAGCTTCAAGGGGTTGAGTTTATTAGGCTTCAGCATCTCTGGAAAAACGTGTGGATGCAGTATTAATTTCAACACTA i papAnu2.chr3 I 457 C 0 s chlSab2.chr21 121544882 766 - 127223203 TTTAAAAATTCAAAAACTCACTTTCTCAGAAAAATGTTAAAATATtaaatctaacaaatatctaggtagactgatggagaaaaatagagaaaatgcacaaataaccaattacctggaatgtgaaggatacaAAATGTCAGC---AGCTGTAGATTTTAAATATGCAATGA-TTTTGAGTTCAACCATGATGGGGTATATTGAAAAGAATCTCTCAAAAA-------AAAGAAAAATAAAACTGTTATAAAGCTATGTACAAAATGTTAAGCACTATTAAAGTCTTCCAGTTCTACCAGTTATGGAGTTATTGGTCTTGAACTAACTCCCCTGGaaaaaaaaa-----a--------aaaaagaaaaaaacttaa-----------aaaCCTGGATAAAATAGCCTACTGTGGGCACTGGCAATGCAACCAAGCAGGTAGGACAT-GTGTACTACAttctctttgtcagaacaggaagcattcatacactcttcccaccctcactctcaccttttaatgtcagatctactattaaatattttcaacattact-------atcaatcctttggtcaaaatttctctgctcacattttgcttgatgcacttggatagaccgttcaagaaagtgcgagcagcgaattcctcgaactcttgcatatttaaaattacatttttgaaccttgatgctt-gaagtgcagcatggGTAACAGGTTGGCTTTAAGCCAATTTTGAGCTTCAAGGGGTTGAGTTTATTAGGCTTCAGCATCTCTGGAAAAACGTGTGGATGCAGTATTAATTTCAACACTA i chlSab2.chr21 I 474 C 0 s calJac3.chr8 20092204 774 + 128169293 TTTAAaaattcaaaagctcactttttcagaaga--------acattaaatctgacaaatatctgggtgcactgatggagaaaaatacagagaatatataaatagccaattatttggaatgcaaaatgcaaaggagacaAGCTGTAGCTGTAGATTTTAAATAAGCAATGA-CTTTGAGTTCAATCAT-ATGGGGTATATTGAAAAGAATCTCTCATAAA-A-----TAAGAAAA--CAATCTCTTATAATGCTATGCACAAAATGTTAAGCATGATTAAAGTCTTCCACTTCTACTAGTTACAGAGCTACTGGTCTTGGACTAACTCTCCTGAAAAAAACAA-----AGACAAC--AACAAAAAAACAACTTAA-----------AAACCTGAATAAAATAGCCTACTGTGGACTTTGGCAACGCAACCAAGCAGGTAGGACATGGGGTACTACAttctctttgtcagaacggggagcattcacacactagtcccaccctcactctcacctttcaatctcagatctattattgaatgtattcaatactattgaatgtaatcaatccttttgttgaaatttctctactcatattttgcttgatgcacttgggtagactgttcaagaaagtacgagtagcaaattccacaaactcttgcatatttaaaattacactttttaaccctgatgctcaaaagggtggcttggctAACAGGTTGGGTTTGAGCCTAACCTGGCATGCAAAGGGTTGAATTTATTAGCCATCAGCACCTCTGGAAAAACGTGGGGATGCAGGATTAATTTCAGCACTA i calJac3.chr8 C 0 C 0 e canFam3.chr18 4111581 6301 + 55844845 I a score=1986386.000000 s hg38.chr1_KI270765v1_alt 144468 615 + 185285 TTCTAAATACTTGAAAGATATTATATAAGTCTTTAATAAACTCCTGTGTCTACAAATGGTTCACA-T-TAACTCAATATCCATGATGAAACATCTATAAAATCAAGGCACTGTTATTTAGTGGAGACTTGCTGGCTATTCTATGAGAG----------GAGGTATTGTTATTGTAATCTCATCATCTCATAAAATTGTATCATATTACTCATAACCAGCCCTTCATATTCTATTCCTATTTTGGTATTTTAAAATAAGATATCTTTGAAATTCTTGAATTCAAAGAGGGAATCTGAATAATTTTTAAAATGTCAATGAAATGCCATTTCTTCATGCTTCAACAACTAAAAATTGACTAAAGTGCTTCTCTTCAATCTTTCTGGGACATTTTTTATCTAAATTCTAAGAACAATCACAATAGGTTTTAACCACAAATGTGAGAATATTCTAAATGTTAGGGTGGAAAAAATTTTTAAATA-----------------TTT-TATAGTAATTTTTTTCATCATAGTGACAGTGTGCTAAA--TTTTTTTAAGCCAACTATTACTGTAGA--CATTTAAGTCAGGATTCTAAGAAGCTG---TTCTAAAGTCCAAAATTCAGTTTCATATACACTGATATTATA------------------------------------------------------TATAT--ATTTGC s panTro4.chr1_GL389091_random 168878 614 + 179278 TTCTAAATACTTGAAAGATATTATATAATTCTTTAATAAACTCCTGTGTCTACAAATGGTTCACA-T-TAACTCAATATCCATGATTAAACATCTATAAAATCAAGGCACTGTTCTTTAGTGGAGACTTGCTGGCTATTCTATGAGAG----------GAGGTATTGTTATTGTAATCTCATCCTCTCATAAAATTGTATCATATTACTCATAACCAGCCCTTCATATTCTATTCCTATTTTGGTATTTTAAAATAAGATATCTTTGAAACTCTTGAATTCAAAGAGGGAATCTGAATAATTTTTAAAATGTCAATGAAATGCCATTTCTTCATGCTTCAACAACTAAAAATTGACTAAAGTGCTTCTCTTCAATCTTTCTGGAACATTTTTTATCTAAATTCTAAGAACAATCACAATAGGTTTTAACCACAAATGTGAGAATATTCTAAATGTTAGGGTGGAACaattttttaaata-----------------ttt-tatagtaatttttt-CATCATGGTGACAGTGTGCTAAA--TTTTTTTAAGCCAACTATTACTGTAGA--CATTTAAGTCAGGATTCTAAGAAGCTG---TTCTAAAGTCCAAAATTTAGTGTCATATACAGTGATATTATA------------------------------------------------------TATAT--ATTTGC i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 5700868 615 + 72422247 TTCTAAATACTTGAAAGATATTATATAATTCTTTAATAAACTCCTGTGTCTACAAATGGTTCACA-T-TAACTCAATATCCATGATTAAACATCTATAAAATCAAGGCACTGTTATTTAGTGGAGACTTG-GGGCTATTCTATGAGAG----------GAGGTATTCTTATTGTAATCTCATCCTCTCATAAAAGTGTATCATATTACTCATAACCAGCCCTTCATGTTCTATTCTTATTTTGGTATTTTAAAATAAGATATCTTTGAAACACTTGAATTCAAAGAGGGAATCTGAATAGTTTTTAAAATGTCAATGAAATGCCATTTCTTCATGCTTCAACAAATACAAATTGACTAAAGTGCTTCTCTTCAAACTTTCTGGAACATTTGTTTTCTAAATTCTAAGAACAATCACAATAGGTTTTAACCACAAATGTGAGAATATTCTAAATGTTAGCGTGGAAAAATTTTTTAAATA-----------------CTCATATAGTAATTTTTTTCATCATAGTGACAGTGTGCTAAA--TTTTTTTAAGTCAAATATTACTGTGGA--CATTTAAGTCAAGATTCTAAGAAGCTG---TTCTAAAGTCCAAAATTTAGTTTCATATACAATGATATTATA------------------------------------------------------TATAT--ATTTGC i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr17 44154877 615 - 99891981 TTCTAAATACTTCAAAGATATTATATAATTCTTTAATAAACTCCTGTGTCTACAAATGGTTCAGA-T-TAACTCAATATCCATGATTAAACATCTATAAAATCAAGGCACTGTTATTTAGTGGAGACTTACTGGCTATTCTATGAGAG----------GAGGTATTGTTATTGTAATCTCATCCTCTCATAAAAGTGTATCATATTACTCATAACCAGCCCTTCATATTCTATTCCTATTTTGGTATTTTAAAATAAGATATCTTTGAAACACTTGAATTCAAAGAGGGAATCTGAATAGTTTTTAAAATGTCAATGAAATGCCATTTCTTCATGCTTGAACAACTAAAAATTGACTAAAGTGCTTCTCTTCAAACTTTCTGGAACATTTTTTATCAAAATTCTAAGAACAATCACAATAGG-TTTAACCACAAATGTGAGAATATTCTAACTGTCAGGGTGGAAAATTTTTTAAAATA-----------------ATTTTATAGTAATTTTTTTCATCATAGTGACAGTGTGCTAAA--TTTTTTTAAGTCAAATATTACTGTAGA--CATTTAAGTCAAAATTCTAGGAAGTTG---TTCTAAAGTCCAAAATTTGGTTTCATATACAATGATATTATA------------------------------------------------------TATAT--ATTTGC i nomLeu3.chr17 C 0 C 0 s rheMac3.chr3 124575512 650 - 198365852 TTCTAAATACTTGGAAGATATTATATAATTCTTTAATAAGCTCCTGTGTCTACAAATGGTTCAGA-T-TAACTCAATATCCATGATTAAACGTCTATAAAACCAAGGCACTGTTATTTAGTGGAGACTTGCTGGCTATTCTATGAGAGCAGTTATTGTGAGGTATTGTTATTGTAATCTCATCCTCTCATAAAAGTGTATCATATTACTCATAACTGGCCCTTCATATTCTATTCCTATTTTGGTATTTTAGAATAAGATATCTTTGAAACACTTGAATTCAAAGAGAGAATCTGAATAGTTTTTAAAATGTCAATGAAATGCCATTTCTTCATGCTTGAACAACTAAAAATTGACTAAAGTGCTTCTCTTCGAACTTTCTGAAACATTTTTTATCTAAATTCTAAGAATAATCACAATAGGTTTTAACTGCAAATGTGAGAATATTCTAAATGTCAGGGTGGaaaa-ttttaaaaataattttatagtaatttttattttatagtaatttttttCATCATAGTGACATTGTGCTAAA--TTTTTTTAAGTCAAATATTACTGTAGA--CATTTAAGTCAAGATTCTAGGAAGTTG---TTCTAA-----------------------------------ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------------- i rheMac3.chr3 C 0 C 0 s macFas5.chr3 125027129 627 - 192294377 TTCTAAATATTTGGAAGATATTATATAATTCTTTAATAAGCTCCTGTGTCTACAAATGGTTCAGA-T-TAACTCAATATCCATGATTAAACGTCTATAAAACCAAGGCACTGTTATTTAGTGGAGACTTGCTGGCTATTCTATGAGAGCAGTTATTGTGAGGTATTGTTATTGTAATCTCATCCTCTCATAAAAGTGTATCATATTACTCATAACTGGCCCTTCATATTCTATTCCTATTTTGGTATTTTAGAATAAGATATCTTTGAAACACTTGAATTCAAAGAGAGAATCTGAATAGTTTTTAAAATGTCAATGAAATGCCATTTCTTCATGCTTGAACAACTAAAAATTGACTAAAGTGCTTCTCTTCAAACTTTCTGGAACATTTTTTATCTAAATTCTAAGAATAATCACAATAGGTTTTAACTGCAAATGTGAGAATATTCTAAATGTCAGGGTGGAAAAGTTTTAAAAATA-----------------ATTTTATAGTAACTTTTTTCATCATAGTGACATTGTGCTAAA--TTTTTTTAAGTCAAATATTACTGTAGA--CATTTAAGTCAAGATTCTAGGAAGTTG---TTCTAAAGTCCAAAATTTAGTTTCATAAACAATTACATTATA------------------------------------------------------TATATA-ATATGC i macFas5.chr3 C 0 C 0 s papAnu2.chr3 122289601 624 - 180432695 TTCTAAATAGTTGGAAGATATTATATAATTCTTTAATAAGCTCCTGTGTCTACAAATGGTTCAGA-T-GAACTCAACATCCATGATTAAACATCTATAAAATCAAGGCACTGTTATTTAGTAGAGACTTGCTGGCTATTC--TGAGAGCAGTTATTGTGAGACATTGTTATTGTAATCTAATCCTCTCATAAAAGTGTATCATATTACTCATAACTGGCCCTTCATATTCTATTCctattttggtattttagaaTAAGATATCTTTGAAACACTTGAATTCAAAGAGAGAAtctgaatagtttttaaaatgtcaatgaaaTGCCATTTCTTCATGCTTGAACAACTAAAAATTGACTAAAGTGCTTCTCTCCAAACTTTCTGGAACATTTTTTATCTAAATTCTAAGAACAATCACAATAGGTTTTAACTGCAAATGTGAGAATATTCTAAATGTCAGGgtggaaaagttttaaaaata-----------------attttatagtaatttttttcatcatagtGACATTGtgctaaa--tttttttaagtcaaatattACTGTAGA--CATTTAAGTCAAGATTCTAGGAAGTTG---TTCTAAAGTCCAAAATTTAGTttcatatacaattatatatta------------------------------------------------------tatat--atatgc i papAnu2.chr3 C 0 C 0 s chlSab2.chr21 121545648 626 - 127223203 TTCTAAATACTTGGAAGATATTATATAATTCTTTAATAAGCTCCTGTGTCTACAAATGGTTCTGA-T-TAACTCAACATCCATGATTAAACATCTATAAAATCAAGGCACTGTTATTTAGTGGAGACTTGCTGGCTATTC--TGAGAGCAGTTATTGTGAGACATTGTTATTGTAATCTCTTCCTCTCATAAAAGTGTATCATATTACTCATAACTGGCCCTTCATATTCTATTCCTATTTTGGTATTTTAGAATAAGATATCTTTGAAACCCTTGAATTCAAAGAGAGAATCTGAATAGTTTTTAAAATGTCAATGAAATGCCATTTCTTCATGCTTGAACAACTAAAAATTGACTAAAGTGCTTCTCTTCAAACTTTCTGGAACATTTTTTATCTAAATTCTAAGAACAATCACAATAGGTTTTAACTGCAAATGTGAGAATATTCTAAATGTCAGGGTGGAAAAGTTTTAAAAATA-----------------ATTTTATAGTAATTTTTTTCGTCATAGTGACATTGTGCTAAA--TTTTTTTAAGTCAAATATTACTGTAGA--CATTTAAGTCAAAATTCTAGGAAGTTG---TTCCAAAGTCCAAAATTTAGTTTCatatacaattatatatta------------------------------------------------------tatatatatatgc i chlSab2.chr21 C 0 C 0 s calJac3.chr8 20092978 611 + 128169293 TTTTAAATACTTGAGAGTTATTATGTAATTCTTCAATAAACCCCTGTGTCTACAAATGGTTCAGGTT-TGACTCAACATCAATGATTAAACATCTATCAAATCAGGGCACTGCTGTTTAGTGGAGACTTGCTGGCTATTCTGTGAGAG----------TAGGTATTGTTATTGCAATCTCATCCTCTTATAAAAGTGTATCATATTACTCATAACCGGTCCTTCATATTCAATTCCTATTTTGGTATTTTAGAATAAAATATCTTTGAAACACTTGAATTCATAGATAGAATCTGAATGGTTTTTAAAATGTCAATGAAATGCTGTTTCTTCATGCTTGAACAACTAAAAATTGACTAAGGTGCTTCTCTTAAAACTTTCTGGAACATATTTTATCTAAATCCTAAGAAAAATCACAATCGTTTTTAACTACAAATGTAAGAATATGCTAAACGTCAGGGTGGAAAATTTTAAAGAATA-----------------ATTTTATAGTCATTTTTT-CATTATTGTGATATTGTGCtaaatttttttttaaattaaatattaCTGTAGA--GGTTTAAGTCAAGATTTT---GAGTTG---TTCTAAAGTACAAAATTTAGTTTCATATGCAATGATATTATA------------------------------------------------------T------ATTTGC i calJac3.chr8 C 0 C 0 s canFam3.chr18 4117882 618 + 55844845 TTCtaaatattgaaaaattattatataatttCTCAATAAATACCTTTGCCTAAAAATGTTAAAAA-TGTAATAAGATATCAATGATTAAATGTCTCCCAAATCAAGGCAATGCAATTCACTGGAACACTGCTGGATATTCTTTGAGAG----------CAGCTATTATTATTATAAACCCATGCTTTTAGAAAAATGTACCATATAACCCAAAATCAGCCTTTCATATTCTATTCCTAATTTAGTGTGTTAGAATAAGGTATTTTTGAAACACTTGAATTCATAAGGAGAATCT---TTTTTTTTTAAATGTCAATGAAATGCCATTTCTTCATGCTTGAACAACTAAAAATTGGCTCAAATTATTCTCCTCAAACTTTCTGAAACATTTTTTATCTAAATTCTAAGAACAATCACAATAGGTTTTAGCTACAAATGTGAGAATATTGTAAATGTCAGGGTGGATAAATTTCAAAATGA-----------------ATTTTATAGTCACCTTATTCATCATAGTGAAATTGTGCTAT---TTTTTTAGAAATATATTTTATTGTACACTCATTTTGGTCATGATTTTGTGAAGCTGCACTTTTAAAGGCTGAAATTTAGTTTCTTATGTGATGATTGTATA------------------------------------------------------TGTAT--ATATGC i canFam3.chr18 I 6301 I 64 a score=886691.000000 s hg38.chr1_KI270765v1_alt 145083 327 + 185285 TTAAAAAATTAATACATGTGAGCCGTGTTTCAAATAGTTGAGAGATTATTATATCAAAGATTCTTGATTATATAAAATGCCAATTACTTATAGGCAGACATGCTTTAAATAATTACTAAGGCAGTTGTGGTTGATTCTACTCTTGCTACTGGCATTTATATGGACATACTATTATGGTCTGAAGAATATTTAGGCAAATTTATCCCTCATATGATCAGAAGAACAATGCAAGATAGTTTATATCTGAAAGG--AAAAAAATCTTTATATGGTTCTGAAAGCGTAAATCATTAACAACTTGGATAATAATTAGCATAAAAATACACAAAC s panTro4.chr1_GL389091_random 169492 326 + 179278 TTAAAAAATTAATACATGTGAGCTGTGTTTCAAATAGTTGAGAGATTATTATATCAAAGATTCTTGATTATATAAAATGCCAATTACTTATAGGCAGACATG-TTTAAATAATTACTAAGGCAGTTGTGGTTGTTTCTACTCTTGCTACTGGCATTTATATGGACATACTATTATGGTCTGAAGAATATTTAGGCAAATTTATCCCTCATATGATCAGAAGAACAATGCAAGATAGTTTATATCTGAAAGG--AAAAAAATCTTTTTATGGTTCTGAAAGCGTAAATCATTAACAACTTGGATAATAATTAGCATAAAAATACACAAAC i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 5701483 326 + 72422247 ATACAAAATTAATATATGTGAGCCATGTTTCAAATAGTTGAGAGATTATTATATCAAAGATTCTTGATTATATAAAATGCCAATTACTTATAGGCACACATGCTTTAAATAATTACAAAGGCAGTTGTGGTTGATTCTACTCTTACTACTGGCATTTATATGGACATAATATTATGGTCTGAAGAATATTTAGGCAAATTTATCCCTCATATGATCAGAAGAACAATGCAAGATAGTTTATATCTGAAAGG--AAAAAAATCTTTATATGGTTCTGAAAGCCTAAATCATTAACAACTTGGATAATAATTAGCATAAAAATAGA-AAAC i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr17 44155492 327 - 99891981 TCATAAAATTAATATATGTGAGCCATGTTTCAAATAGTTGAGAGATTATTATATCAAAGATTCTTGATTATATAAAATGCCAATTACTTATAGGCACACATGCTTTAAATAATTACAAAGGCAGTTGTGGTTGATTGTACTCTTGCTACTGGTATATATATGGACATAATATTATGGTCTGAAGAATATTTAGGTAAATTTATACCTCATATGATCAGAAGAACAATGCAAGACAGTTTATATCTGAAAGG-AAAAAAAATCTTTAT-TGGTTCTGAAAGCCTAAATCATTAACAACTTGGATAATAATTAGAATAAAAATACACAAAT i nomLeu3.chr17 C 0 C 0 s rheMac3.chr3 124576162 308 - 198365852 -------------------GAGCCATGTTTCAAATAGTTGAGAACTTACTATATCAAAGATTCTTGATTAT-TAAAATGCCAGTTGCTTTTAGGCACACATGCTTTAAATAATTACAAAGGCAGTTGTGGTTGATTCTACTCTTGCTACTGGCATTTATGTGGACATAATATTATGGTCTGAAGAATATTTGCGTAAATTTATCCCTCATATGATCAGAAGAACAATGCAAGATAGTTTATATCTGAAAGG-AAAAAAAATCTTTATATGGTTCTGAAAGCCTAAATCATTAACAACTTATATAATAATTAGAATAAAAATACACAAAT i rheMac3.chr3 C 0 C 0 s macFas5.chr3 125027756 327 - 192294377 ATATAAAATTAAAACACATGAGCCATGTTTCAAATAGTTGAGAACTTACTATATCAAAGATTCTTGATTAT-TAAAATGCCAGTTGCTTTTAGGCACACATGCTTTAAATAATTACAAAGGCAGTTGTGGTTGATTCTACTCTTGCTACTGGCATTTATGTGGACATAATATTATGGTCTGAAGAATATTTGCGTAAATTTATCCCTCATATGATCAGAAGAACAATGCAAGATAGTTTATATCTGAAAGG-AAAAAAAATCTTTATATGGTTCTGAAAGCCTAAATCATTAACAACTTATATAATAATTAGAATAAAAATACACAAAT i macFas5.chr3 C 0 C 0 s papAnu2.chr3 122290225 327 - 180432695 atatataattaaaACACATGAGCCATGTTTCAAATAGTGGAGAACTTATTATATCAAAGATTCTTGATTAT-TAAAATGCCAATTGCTTTTAGGCACACATGC-TTAAATAATTACAAAGGCAGTTGTGGTTGATTCTACTCTTGCTACTGGCATTTATGTGGACATAACATTATGGTCTGAAGAATATTTGCGTAAATTTATCCCTCATATGATCAGAAGAACAATGCAAGATAGTTTatatctgaaaggaaaaaaaaatctttatatggTTCTGAAAGCCTAAATCATTAACAACTTGTataataattagaataaaaatacacaaat i papAnu2.chr3 C 0 C 0 s chlSab2.chr21 121546274 328 - 127223203 atataAAATTAAAACACATGAGCCATGTTTCAAATAGTGGAGAACTTATTGTATCAAGGATTCTTGATTAT-TAAAATGCCAATTGCTTTTAGGCACACATGCTTTAAATAATTACAAAGGCAGTTGTGGTTGATTCTACTCTTGCTACTGGCATTTATGTGGACATAACATTATGGTCTGAAGAATATTTGTGTAAATTTATCCCTCATATGATCAGAAGAACAGTGCAAGATAGTTTATATCTGAAAGGAAAAAAAAATCTTTGTATGGTTCTGAAAGCCTAAATCATTAACAACTTGTATAATAATTAGAATAAAAATACACAAAT i chlSab2.chr21 C 0 C 0 s calJac3.chr8 20093589 323 + 128169293 ATATAAAA-----ATATATGAGTAATGTTTCTAATAGTTGAGAACTTACTATATCAAAGATACTTGATTATATGAAATACCAATTATTTTTAGGCACACATGTTTAAAATAATTACAAAGATAGGTGTGGTTGATTCTACTCTAACAGTTGACATTTATATGGACATAATATTATGATCTTCAGAGTATGCAGGTAAACTTATCCTGCATATGATCAGAAGATGAAAATAAGATAGTTTATATCTCAAAGG-AAAAAAAATCTATACATGGTTTTGAAAGCCCAAATGATTAACAAATGAAATAATAATTAGAATAAAAATACACAAAT i calJac3.chr8 C 0 C 0 e canFam3.chr18 4118500 64 + 55844845 I a score=999810.000000 s hg38.chr1_KI270765v1_alt 145410 344 + 185285 ATGCCCTCTTCCTAGCAGTAAGTAC------ACAGTGACAACAGAATC-AAAGCATGTGGCTATGTGCATGTTTATATTTCAAGACGCAGAGCACTCTATTCCTCCTCTCTGCCCTTTCTAGATGGCACAATCCCTCATGAATCTAAGTGCAGTCATAGGGTGGATTAGGGTGACCTGCCATTTGTATGCAACTGATCTC---T------AGTTTGGAAGTAATTAATGT---CAAAATATATTTTTAAAAGGTAATTTCAAATTTCAGGGCAAACTAGCATGGTTTCGCCCCTTTTCTTTGGAACATTTTTTCTAAGGTTGGAAAA-GTAAGGTAGGCTTTAGTACGATTTTAAATAATAAGT s panTro4.chr1_GL389091_random 169818 344 + 179278 ATGCCCTCTTCCTAGCAGTAAGTAC------GCAGTGACAACGGAATC-AAAGCATGTGGCTATGTGCATGTTTATATTTCAAGACGCAGAGCACTCTATTCCTCCTCTCTGCCCTTTCTAGATAGCACAATTCCTCATGAATCTAAGTGCAGTCATAGGGTGGATTAGGGTGACCTGCCATTTGTATGCAACTGATCTC---T------AGTTTGGAAGTAATTAATGT---CAAAATATATTTTTAAAAGATAATGTCAAATTTCAGGGCAAACTAGCATGGTTTCACCCCTTTTCTTTGGAACATTTTTTCTAAGGTTGGAAAA-GTAAGGTAGGCTTTAGTACGATTTTAAATAATGAGT i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 5701809 305 + 72422247 ATGCCCTCTTCCTTGCAGTAAGTAC------ACAGTGACAACAGAATC-AAAGCATGTGGC---------------------------------------TCCTCTTCTCTGCCCTTTCTAGATGGCACAATTCCTCATGAATCTAAGTGCAGTCATAGGGTGGATTAGGGTGACCTGCCATTTGTATGCAACCGATCTC---T------ATTTTGGAAGtaattaatgt---aaaaatatatttttaaaagataatttCAAATTTCAGGGCAAACTAGCATGGTTTCACCCCTTTTCTTTGTAACATTTTTTCTAAGGTTGGAAAA-GTAAGGTAGGCTTTAGTAAGATTTTTAATAATAAGT i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr17 44155819 344 - 99891981 ATGCCCTCTTCCTAGCAGTAAGTAC------ACAGTGACAACAGAATC-AAGGCATGTGGCTATGTGCATGTTTATATTTCAAGATGCAGAGCACTCTATCCCTCTTCTCTGCCCTTTCTAGATGGCACAATTCCTCAGGAATCTATGTGCAGTCGTAGGGTGGATTAGGGTGACCTGCCATTTGTATGCAACTGATCTC---T------ATTTTGGAAGTAATTAAAGT---AAAAATATATTTTTAAAAGATAATTTCAAATTTCAGTGCAAACTAGCATGGTTTCACCACTTTACTTTGTAACACTTTTACTAAGGTTGGAAAA-GTAAGGTAGGCTTTAGTACGATTTTTAATAATAAGT i nomLeu3.chr17 C 0 C 0 s rheMac3.chr3 124576470 345 - 198365852 CTGCCCTCTTCCTAGCAGTAAGTACACAGTGACAGTGACAACAGAATC-AAAGCACGTGGCAATGCACATGTTTATATTCCAAGATGCGGAGCATTCTATTCCTCTTCTCTGTCCTTTCTAGATGGCACAATTCCTCAGGAATCTAAGTGCAGTCATAGGGTGGATTAGGGTGACCTGCCATCTGTATA-AATTGATCTC---C------ATTTTGGAAG----TAAAGT---GAAAATATATTTTTGAGAGATAATTTCAAATTTCAGTGCAAACTAGCATGTTTCCATCCCTTTTCTTTGTACCAGTTTTTCTAAGGTTGGGAAA-GTAAGGTAGGCTTTAGTATGATTTTTAATAATAAGT i rheMac3.chr3 C 0 C 0 s macFas5.chr3 125028083 345 - 192294377 CTGCCCTCTTCCTAGCAGTAAGTACACAGTGACAGTGACAACAGAATC-AAAGCACGTGGCAATGCGCATGTTTATATTCCAAGATGCGGAGCATTCTATTCCTCTTCTCTGTCCTTTCTAGATGGCACAATTCCTCAGGAATCTAAGTGCAGTCATAGGGTGGATTAGGGTGACCTGCCATCTGCATA-AATTGATCTC---C------ATTTTGGAAG----TAAAGT---GAAAATATATTTTTGAGAGATAATTTCAAATTTCAGTGCAAACTAGCATGTTTCCATCCCTTTTCTTTGTACCAGTTTTTCTAAGGTTGGGAAA-GTAAGGTAGGCTTTAGTATGATTTTTAATAATAAGT i macFas5.chr3 C 0 C 0 s papAnu2.chr3 122290552 337 - 180432695 atgccCTCTTCCTAGCAGTAAGTAC------ACAGTGACAACAGAATC-AAAGCATGTGGCAATGTGCATGTTTATATTCCAAGATGCGGAGCACTCTATTCCTCTTCTCTGTCCTTTCTAGATGGCACAATTCCTCATGAATCTAAGTGCAGTCATAGGGTGGATTAGGGTGACCTGCCATCTGTATA-AATTGATCTC---C------ATTTTGGAAg----taaagt---gaaaatatatttttgagagataatttcaaatttcagtgcAAACTAGCATGTTTCCATcccttttc-ttgttccagtttttCTAAGGTTGGGAAA-GTAAGGTAGGCTTTAGTACAA-TTTTAATAATAAGT i papAnu2.chr3 C 0 C 0 s chlSab2.chr21 121546602 339 - 127223203 ATGCCCTCTTCCTAGCAGTAAGTAC------ACAGTGACAACAGAATC-AAAGCATGTGGCAATGTGCATGTTTATATTCCAAGATGCGGAGCACTCTATTCCTCCTCTCTGTCCTTTCTAGATGGCACAATTCCTCATGAATCTAAGTGCAGTCATAGGGTGGATTAGGGTGACCTGCCATCTGTATA-AATTGATCTC---C------ATTTTGGAAG----TAAAGT---GAAAATATATTTTTGAGAGATAATTTCAAATTTCAGTGCAAACTAGCATGTTTCCATCCCTTTTCTTTGTTCCAGTTTTTCTAAGGTTGGGAAA-GTAAGGTAGGCTTTAGTACAATTTTTAATAATAAGT i chlSab2.chr21 C 0 C 0 s calJac3.chr8 20093912 344 + 128169293 ATGCGCTCTTCCTAGCAGTAAATAC------ACAGTGACAACACATTCAAAAGCATGTGACTATGTGCACGTTTACATTCCAAGATGCAGGGTACTCTATTCCTCTCCTCTGCTCTTTCTAGAT-GCACAATTCCTTGTGAATCTAAGTGCAGTCATAGGGTGGATTAGGATCTCCTGTCATTTCTGTGCAATTGTTCTCTTTC------ACTCTGGAGGTAATTAAAAC---AAAAATATATTTTAGAAACACGATTTCCAATTGCAGTGCAAATTAGCATGTTTTTA---CTTGTCCCTGTAACAGATTTTCTAATGTTGGAAAA-ATAAGGTAGGCTTTAGTATGATTTTTGATTATAAGT i calJac3.chr8 C 0 C 0 s canFam3.chr18 4118564 349 + 55844845 ATACCCTCTTTTAAGCTGTAAAAAT------AGGATGATAATA----C-AAAGCATATGCCTGCATCCATTTTTATGTTCCAAGAAGCAGCACACTCTATTCCTTTTCTCTGCTCACTCTAGATGATACAGTTTTTCATAAATCAAAGTACAATCATAGGATAAAGCAGGG-GTTTTGATATTTGTATGGAACTGCTCTT---CTCTTTAGCTTTTGAGGTAATGAAGGCAAAAAAAAAAAAATTTAAGCATAAAATTTTAGATTACAATGCAAACTAGTATGTTTTCACCCATTCTGGTTGTCCCAGCTTCTCTAACACAAAAAAATATGAAATAGCCTTTAGTGTGATTTTTGATAATAACT i canFam3.chr18 I 64 I 201 a score=391996.000000 s hg38.chr1_KI270765v1_alt 145754 118 + 185285 TTTCAAAGTGAGACGCAAAATGGTGGCGCCAACACATTTCAAATCTGCTACATTTTGAAGACACTTATTGGAGAAAAGACCTTCTCATCATTTTTCTCTTACAGGAAAGGAAATAACA s panTro4.chr1_GL389091_random 170162 118 + 179278 TTTCAAAGTGAGACGCAAAATGGTGGCGCCAACACATTTCAAATCTGCTACATTTTGAAGACACTTATTGGAGAAAAGATCTTCTCATCATTTTTCTCTTACAGGAAAGGAAATAACA i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 5702114 118 + 72422247 TTTCAAAGTGAGACGCAAAATGGTGGCGCCAACACATTTCAAGTCTGCTACATTTTGAATACACTTATTGGAGAAAAGACCGTCTCATCATTTTTCTCTTACAGGAAAGGAAATAACA i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr17 44156163 118 - 99891981 TTGCAAAGTGAGACACAAAATGGTGGCGCCAACACATTTCAAGTCTGCTACATTTTGAACACACTTATTGGAGAAAAGACCTTCTCATCATTTTTCTCTTACAGGAAAGGAAATAACA i nomLeu3.chr17 C 0 C 0 s rheMac3.chr3 124576815 118 - 198365852 TTTTAAAGTGAGACACACAATGGTGGAGCCAACATATTTCAAGTCTGCTACATTTTGAGTACACTTACTGGAGAAAAGAACTTCTCATCATTTTTCTCTTACAGGAAAGGAAATAACA i rheMac3.chr3 C 0 C 0 s macFas5.chr3 125028428 118 - 192294377 TTTTAAAGTGAGACACACAATGGTGGAGCCAACATATTTCAAGTCTGCTACATTTTGAGTACACTTACTGGAGAAAAGAACTTCTCATCATTTTTCTCTTACAGGAAAGGAAATAACA i macFas5.chr3 C 0 C 0 s papAnu2.chr3 122290889 118 - 180432695 TTTCAAAGTGAGACACAAAATGGTGGAGCCAACATATTTCAAGTCTGCTACATTTTGAACACACTTACTGGAGAAAAGAACTTCTCATCATTTTTCTCTTACAGGAAAGGAAATAACA i papAnu2.chr3 C 0 C 0 s chlSab2.chr21 121546941 118 - 127223203 TTTCAAAGTGAGACACAAAATGGTGGAGCGAACATATTTCAAGTCTGCTACATTTTGAATACACTTACTGGAGAAAAGAACTTCTCACCATTTTTCTCTTACAGGAAAGGAAATAACA i chlSab2.chr21 C 0 C 0 s calJac3.chr8 20094256 118 + 128169293 TTTCAAAGTGAGGCACAAAATAGTGGCACCAACATATTTGAAGTCTGCTACATTTTGAACACACGTCCTAAAGAAAATATATTCTCATCATTTTTCTCTTGTAGGAAAGGAGATATCA i calJac3.chr8 C 0 C 0 s canFam3.chr18 4119114 113 + 55844845 TTTTAAAGTGAGATACAAAATGG-AGTACTAATGCATTTAAATTCTGCTACACTTTGAATACACTTATT----AACATGTCTTTGAATCACTTTATTTTTATAGGAATAGAGATAGCA i canFam3.chr18 I 201 I 2 a score=1017865.000000 s hg38.chr1_KI270765v1_alt 145872 376 + 185285 CGTAcggttgacccttaagcaacacggaggtt-ggggtgctgg-accacctgcacggtagaaaatacactataactttgactcccccaaaacttaactactaatagcctactgtaagcctgacaaataaca----cagtcaattaacacatatttaatatg--ttatatgtcttatatactgtattctt---aacaaacatgccagagaaaagaaaaaag----aaaatcataaggaaaatagatttactagttattaaatggaagtagatgatcaaacaggtcttcatcctcatctttctcatgggcaggatgtggataaggatgtagaattgttggttttgctaagtggacgtgcacagttcaaacccctgtggtgcaaaggccaactg s panTro4.chr1_GL389091_random 170280 367 + 179278 TGTAcagttgacccttaagcaacacggaggtt-ggggtgctgg-cccccctgcacagtagaaaatccactataactttgactaccccaaaacttaactactaatagcctactgtaagccttacaaataaca----cagtcaattaacacatatttaatatg-----------ttatagactgtattctt---aacaaacatgccagagaaaagaaaaaag----aaaatcataaggaaaatatatttactagttattaaatggaagtagatgatcaaacaggtcttcatcctcatccttttcatgggcagggtgtggataaggatgtagaattgttggttttgctaagtggacgtgcacagttcaaacccctgtggtgcaaaggccaactg i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 5702232 379 + 72422247 TGTAcagttgacccttaagcaacacggaggtt-ggggtgctgg-cccccctgcacagtagaaaatccactataactttgactcccccaaaacttaactactaatagcctactttaagccttacaaataacacaagcagtcagttaacacatatttaatatg--ttatatgtcttatatactgtattctt---aacaaacatgccagagaaaa-caaaaag----aaaatcataaggaaaatatatttactagttattaaatggaagtagatgatcaaacaggtcttcctcctcacccttttcatgggcagggtgtggagaaggatgtagaattgttggttttgctaagtggacctgcacagttgaaacccctgtggtgcaaaggccaactC i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr17 44156281 377 - 99891981 GGTAcagttgacacttaagcaacacggaggttaggggtgctggccccccccgcacagtagaaaatccactataactttgactcccccaaaacttaactattaatagcctactggaagccttacaaataacacaagcagtcaattaacacatatttaatatg--ctatatctcttatatactgtattctt------aaacatgccagagaaaa-gaaaaat----aaaatcataaggaaaatatatttcctagttattaaatgcaagtagatgatcaaa-aagtcttcatcctcatccttttcatgggcaggatgtggagaaggatgtagaattgttggttttgctaagtggatctgcacagttcaaacccctgttgtgcaaaggccaactg i nomLeu3.chr17 C 0 C 0 s rheMac3.chr3 124576933 385 - 198365852 TGTAcagttgaaccttaagcaacacggaggttaggggtgctgg-cccccttgcaccatagaaaatccactacaactttgactcctccaaaatgtaactaccaatagcccactgtaagccttgcaaataacacaagcagtcaattaacacacatttaatatgagttatatgtcttatatactgtattcttacaaacaaataagccagagaaaa-gaaaaag----aaaatcataaggaaaatatattcactagttattagatggaagtaggtcatcaaaaaggtcttcatcctcatccttttcatgggcagggtgtggagaaggatgtagaattgttggttttgctaagtggacctgcacagttcaaacccctgttgtgcaaaggccaactg i rheMac3.chr3 C 0 C 0 s macFas5.chr3 125028546 385 - 192294377 TGTAcagttgaaccttaagcaacacggaggttaggggtgctgg-cccccttgcaccatagaaaatccactacaactttgactcctccaaaatgtaactaccaatagcccactgtaagccttgcaaataacacacgcagtcaattaacacacatttaatatgagttatatgtcttatatactgtattcttacaaacaaataagccagagaaaa-gaaaaag----aaaatcataaggaaaatatattcactagttattagatggaagtagatcatcaaaaaggtcttcatactcatccttttcatgggcagggtgtggagaaggatgtagaattgttggttttgctaagtggacctgcacagttcaaacccctgttgtgcaaaggccaactg i macFas5.chr3 C 0 C 0 s papAnu2.chr3 122291007 385 - 180432695 TGTACAGTTGAACCTTAAGCAACACGGAGGTTAGGGGTGCTGG-CCCCCTTGCACCATAGAAAATCCACTATAACTTTGACTCCTCCAAAATGTAACTACCAATAGCCCACTGTAAGCCTTACAAATAACACAagcagtcaattaacacatatttaatATGAGTTATATGTCTtatgtactgtattcttacaaacaaataagccagagaaaa-gaaaaag----aaaatcataaggaaaatatattcactACTCTTTAGATGGAAGTAGATCATCAagaaggtcttcatcctcatccttTTCATGGGCAGGGTGTGGAGAAGGATGTAGAATTGTTGGTTTTGCtaagtggacctgcacagttcaaaccccTGTTGTGCAAAGGCCAACTG i papAnu2.chr3 C 0 C 0 s chlSab2.chr21 121547059 385 - 127223203 TGTAcagttgaaccttaagcaacacggaggttaggggtgctgg-cccccttgcaccatagaaaatccactataactttgactcttccaaaatgtaactaccgatagcccactgtaagccttacaaataacacaagcagtcaatgaacacatatttaatatgagttatatgtcttatgtactgtattcttacaaacaaataagccagagaaaa-gaaaaag----aaaatcataaggaaaatatgttcactagttattagatggaagtagatcatcaaaaaggtcttcatcctcatccttttcatgggcagggtgtggagaaggatgtagaattgttgcttttgctaagtggacctgcacagttcaaacccctgttgtgcaacggccaactg i chlSab2.chr21 C 0 C 0 s calJac3.chr8 20094374 377 + 128169293 TGTAcagttgacccttaagcaactaagaggttaagggt-ccag-ccctcccactcagtagaaaatctactatatcttccactcgcacaaaacttaactactaacagcctactgtaagccttacaaataacataggcagtcaattagcacatatttaatacg--ctatatgtatcctatactgtattcttacaaacaaatatctcagagaaaa-gaaaaagtaaaaaaatcataagaaaaatatatttactagttattaaatggaagtagatcatcataaaggtcttcagcctcatctacttcatgagcagggtgaggagaaggaggtag---------tcttgctaactggaccggcaaagttccaacctctgctgtccaaggatcaactg i calJac3.chr8 C 0 C 0 e canFam3.chr18 4119227 2 + 55844845 I a score=295996.000000 s hg38.chr1_KI270765v1_alt 146248 95 + 185285 TATAGCCATTGAATAGCAATTTATATTTAGAAATTAACCTCACTAAAATACTCTTAGAAAGATGCCCAGAAAAAAAGTGAATAAGAATTTTTGGT s panTro4.chr1_GL389091_random 170647 95 + 179278 TATAGCCATTGAATAGCAATTTATTTTTAGAAATTAACCTCACTAAAATATTCTTAGAAGGATGCCAAGAAAAAAAGCGAATAAGTATTTTTGGT i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 5702611 95 + 72422247 TATAGCCATTGAACAGCAATTTAGGTTTAGAAATTAACCTCACTAAAATGCTCTTAGAAGGATGCCAAGAAAAAAAATGAATAAGTATTTTTGGT i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr17 44156658 95 - 99891981 TATAGCCATTGAATAGCAATTTATTTTTAGAAATTAACCTCACTAAAATACTCTTAGAAGGATGCCAAGACAAAAAATGAATAAGTATTTTTGGT i nomLeu3.chr17 C 0 C 0 s rheMac3.chr3 124577318 95 - 198365852 TATAGCCATTGAATAGCAATTTGTTTTTAGAAATTAGTCTAACTAAAATATTCTTAGAAGGATGCCAAGAAAAAAAATTAATAAGCATCCTTGGT i rheMac3.chr3 C 0 C 0 s macFas5.chr3 125028931 95 - 192294377 TATAGCCATTGAATAGCAATTTGTTTTTAGAAATTAGTCTAACTAAAATATTCTTAGAAGGATGCCAAGAAAAAAAATTAATAAGCATCCTTGGT i macFas5.chr3 C 0 C 0 s papAnu2.chr3 122291392 95 - 180432695 TATAGCCATTGAAtagcaatttatttttagaaatgagtCTAACTAAAATATTCTTAGAAGgatgccaagaaaaaaaatgaataagcatCTTTGGT i papAnu2.chr3 C 0 C 0 s chlSab2.chr21 121547444 95 - 127223203 TATAGCCATTGAATAGCAATTTATTTTTAGAAATGAGTCTAACTAAAATATTCTTAGAAGGATGCCAAGAAAAAAAATGAATAAGCATCTTTGGT i chlSab2.chr21 C 0 C 0 s calJac3.chr8 20094751 86 + 128169293 CATAACCATTGAACAGCAATT--------GAAATTAATTTTACTAAAATAGTCTTAGAAGGATGCCAAGAAAAAAA-TAAATAAGCATCTTTGGT i calJac3.chr8 C 0 C 0 s canFam3.chr18 4119229 91 + 55844845 TATATCCATTAAACGGCAATTTATTTCTAGCAATTAATCTTGCAGAAATACTCTTACAAATATGCCAAGGGGAAAA----AAAAGGATCTTCAGT i canFam3.chr18 I 2 N 0 a score=17028.000000 s hg38.chr1_KI270765v1_alt 146343 5 + 185285 TCATC s panTro4.chr1_GL389091_random 170742 5 + 179278 TCATC i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 5702706 5 + 72422247 TCATC i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr17 44156753 5 - 99891981 TCATC i nomLeu3.chr17 C 0 C 0 s rheMac3.chr3 124577413 5 - 198365852 TCATC i rheMac3.chr3 C 0 N 0 s macFas5.chr3 125029026 5 - 192294377 TCATC i macFas5.chr3 C 0 C 0 s papAnu2.chr3 122291487 5 - 180432695 TCATC i papAnu2.chr3 C 0 C 0 s chlSab2.chr21 121547539 5 - 127223203 TCATC i chlSab2.chr21 C 0 N 0 s calJac3.chr8 20094837 5 + 128169293 TCATC i calJac3.chr8 C 0 N 0 a score=3024.000000 s hg38.chr1_KI270765v1_alt 146348 3 + 185285 TAT s panTro4.chr1_GL389091_random 170747 3 + 179278 TAT i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 5702711 3 + 72422247 TAT i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr17 44156758 3 - 99891981 CAT i nomLeu3.chr17 C 0 N 0 s macFas5.chr3 125029031 3 - 192294377 CAT i macFas5.chr3 C 0 N 0 s papAnu2.chr3 122291492 3 - 180432695 CAT i papAnu2.chr3 C 0 N 0 a score=187933.000000 s hg38.chr1_KI270765v1_alt 146351 670 + 185285 TACATCATTtcatt---tcatt-----atttcatttcttttcatcatttcat--------ttcatttc--ctcatttcatcctttcatttcatcatttcatcatttcatctcatttcc---tcatttcatcctttcatttca-----tcatttcatcatttcatctcatttcctcatttcatcatttcatttcatccttccatttcatcat-----ttcatcttatcatttcatc---tcattttatcatttcatttcattctttcatttcatttcatcatttcatctca-------acatttcat---ttcatcatttcacttc----atctcatcat-----ttcatctcatcatttcatttcatctcaccatttcatttcatctcatcatttcatttca---tctca--tcatttcatcttttcatctcatcatttcatcatttcatttcatcttttcat---ctcatttcatttcatcaattcatcatttcatctcatcatttcatctcatttcatttcacttcatttcattgtttcatttcatcatttcatttcatcacttcatctcgacatttcatttcgtcatttcactttatctcatttcatcttttcatctcat----------------gatttcatttcatctc---atttcatttcatctcatttcatt---tcatctcatcatttcatttcatcttttcatctcatcatttcatcatttcatc---tcatttcatttcatcat s panTro4.chr1_GL389091_random 170750 539 + 179278 TACAtcatttcatt---tcatt-----atttcatttcttttcatcatttcat--------ttcatttc--ctcatttcatcctt--------tcatttcatcatttcatctcatttcc---tcatttcatcatttcatttca-----tcctt---tcatttcat------------------------------------catttcatcat-----ttcatctcatcatttcttc---tcattttatcatttcattc----------tttcatttcatcatttcatctca-------acattttat---ttcatcatttcacttc----atctca-----------------------------------------tcatttcatctcatcatttcatttca---tctca--tcatttcatcttttcatctcattatttcattatttcatttcatcttttcat---ctcatttcatttcatcaattcatcatttcatctcataatttcatctcatttcatttcacttcatttcattgtt--------tcatttcatttcatcacttcatctcaacatttca-----tcatttcactttatctcatttcatcatttcatctcat----------------gatttcattccatc--------tcattccatctcatttcatc-----------tcatttcatttcatcttttcatctcatcatttcaacatttcatc---tcatt------------ i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 5702714 700 + 72422247 TTCAtcatttcatt---tcatttcatcatttcatttcatttcctcatttca----------tcatttcatttcatttaatcctttcatttcatcatttcatcatttcatctcatcatt---tcatttcattctttcatttca--------tttcatcatttcatttcatcatttcatctcaacatttcagtt--------catttcatcatttcacttcatctcatcatttcaccttttcatctcgtcatttcatttcatcatttcatttcatttcatcttttcatctcatttcatttcatttcaa---ttcatcatttcatttcatttatttcatcat-----ttcatttcatcatttcatttcctcatttca--ttatttcatttcatcatttcatttcattctttca--tcatttcatcatttcatttcatcatttcatcatttcacttcatcatttcatttcctcatttcattatttcatttcatcatttcatttcatttcatcgtttca--tcatttcatctcatttcatcctt--------tcatttcatttcatcacttcatctcatcattgcattttgtcatttca--tcattttatttcatcatttcacttcatctcatcatttcatcacgatttcatttcatctcatgatttcatttcatctcatttcatcttttcatctcgtcatttaatttcatcatttcatttcatcaattcatcatttcatcatttcatttcatttcattat i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr19 44879829 664 - 81552678 ttcatcatttcatttcctcatttcctcatttcattt-atttcatcatttcatttcatccgttcatttc--atcatttcatcctttcatt---tcatctcatcctttcatctcatcatcatttcatttcatcatttcacttcatctcatcatttcatcatttcatctcatgatttcatttcatctcatcattt--------gatctcatgat-----ttcatctcatcatttcatcttttcatctcgtcatttcatttcatct-----tttcatcttgtcatttcatttca-------tcatttcattaattcatcatttcacttc----atttcatcatttcacttcatttcatcatttcacatcatttcatcatttcatatcatttcatcatttcacttcatcatttcatttcatttcaccatttcacttcatcatttcatcatttcatttcactatttcat---ttca--tcatttcatcattccatcctttcatttcatcattttatttca--tcctttcatttca------------------tcatttcatctcatcatttcatttcatcctttcatttcatcatttcatctcatttcgtctcatcatttcatctcat----------------catttcatctcatcacttca--tcatttcatttcatttcact---tcatcccatcatttcatctcatgatttcatttcatc------tcatttcatc---tc--ttcatctcgtaat i nomLeu3.chr19 N 0 C 0 a score=33752.000000 s hg38.chr1_KI270765v1_alt 147021 229 + 185285 ttcatttcattt-atttcatcattgcatcatttgacttcatgtcatcatttcatcatttcatttcatttatttcatcattgcatcatttgacttcatgtcatcatttcatcatttcatatcatttcatcatttcatgttttcattcaatcatttcatcatttcacttattcatttcatttcatcttttcatttcctcatttcatcatttcatttcatcctttcatcattt s panTro4.chr1_GL389091_random 171289 185 + 179278 ---------------------------------------------tcatttcatcatttcatttcatttatttcatcattgcatcatttgacttcatgtcatcatttcatcatttcatatcatttcatcatttcatcttttcattccatcatttcatcatttcacttcatcatttcatttcatcatttcatttcctcatttcatcatttcatttcatcctttcatcattt i panTro4.chr1_GL389091_random C 0 C 0 s nomLeu3.chr19 44880493 203 - 81552678 -----ttcatttcatttcatcttttcatctcatcatttcatttcattatttcatcatttcatttcattt------------catcatttcacttcatcatttcattccatcatttcatatcatt---tcatttcatcttttcatttcatcatttcattatttcgtttcatcatttcacttcatcatttcat---ctcatttcatttcctcatctca----ttcaccattt i nomLeu3.chr19 C 0 I 132 e ponAbe2.chrUn 5703414 0 + 72422247 C a score=24483.000000 s hg38.chr1_KI270765v1_alt 147250 369 + 185285 catctcatcatttcatcctttcatttcattatttcatttcataatttcttctcattgttgcattttgtcattccatca-ttcatcatttcacttcatctcatcatttcatcatctcacgatttcatctcatttcatctcgtttcatcttttcatctcgtcatttcatttcatcatttcatttcatctcatcttttcatctcatttca-ttgatcatttcatcaattcatcatttcatcatttcatttcattatttcatcatttaatcatttaacttcatttcatcacttcatttcatttcatcatttcatatcatttcttcatttcaccatttgatcttctcatttcatttcatcatttcatcatttcact s panTro4.chr1_GL389091_random 171474 317 + 179278 catc---tcatttcatcctttcatttcattatttcatttcataatttcttctcattgttgcatttcgtcattccatcatttcatcatttcacttcatctcatcatttcatcatctcacgatttca---------------tttcatcttttcatctcgtcatttcatttcatcatttcatt-----tcatcttttcatctcatttcatttgaacatttcatcaattca-------------tcatttcattatttcatcatttaatcatttaac------------------ttcatttcatcatttcatatcatttcttcatttcaccatttgatcttttcatttcatttcatcatttcatcatttcact i panTro4.chr1_GL389091_random C 0 C 0 e ponAbe2.chrUn 5703414 0 + 72422247 C e nomLeu3.chr19 44880696 132 - 81552678 I a score=0.000000 s hg38.chr1_KI270765v1_alt 147619 1438 + 185285 tcatttcatttcatcatttcatttcctcatttcatttcaccatttcatttcctcatttcatttcatcattccatttcatcatttcattacatttcatcatttcatcatttcacttcatctcatcatttcatcatttcatctcatgatttcatttcatctcatttcatcatttcacttcattctttcatttcatttcatcatttcatctcaacatttcatttcatttcatcatttcatttcatctcatcatttcatcatttcacttcatcttatcatttcatcatctcatgatttcatttcatctcatcatttcatctcatttcatcttttcatctcgtcattacatttcatcatttcatttcatcttttcatctcgtcatttcatttgatcatttcatcaattcatcatttcatcatttcatttcatttcattatttcatcatttaatcatttaacttcatttcctcatttcatttcatttcatcatttcatatcatttcttcacttcaccatttgatcttttcatttcatttcatcattccatttcatttcctcatttcatttcacaatttcatttcatcatttcatttcatcattccatttcatcacatttcatcatttcatcatttcacttcatctcatcatttcatcatctcacgatttcatttcatctcatttcatcttttcatctcgtcatttcatttcatcatttcatttcatctcatcttttcatctcatttcatttgatcatttcatcaattcatcatttcatcatttcatttcattatttcatcatttaatcattcaacttcatttcatcacttcatttcatttcatcatttcatatcatttcttcatttcaccatttgatcttctcatttcatttcatcatttcatcatttcatcatttcacttcatttcatttcatcatttcatttcatttcctcatttcatttcaccatttcatttcatcatttcatttcatcattccatttcatcatttcattacatttcatcatttcatcatttcatttcatctcatcatttcatcatttcatctcatgatttcatttcatctcatttcatcatttcatttcattctttcatttcatttcatcatttcatctcaacatttcatttcatttcatcatttcatttcatctcatcatttcatcatttcacttcatctcatcatttcatcatctcatgatttcatttcatctcatgatttcatctcatttcatcttttcatctcgtcattacatttcatcatttcatttcatcttttcatctcgtcatttcatttgatcatttcatcaattcatcatttcatcatttcatttcatttcattatttcatcatttaatcatttaacttcatttcctcatttcatttcatttcatcatttcatatcatttcttcacttcaccgtttgatc e ponAbe2.chrUn 5703414 0 + 72422247 C e nomLeu3.chr19 44880696 132 - 81552678 I e panTro4.chr1_GL389091_random 171791 0 + 179278 C a score=4240.000000 s hg38.chr1_KI270765v1_alt 149057 49 + 185285 ttttcatttcatttcatcattccatttcatttcctcatttcatttcaca s panTro4.chr1_GL389091_random 171791 49 + 179278 tcatcatttcatttcatcattccatttcatttcctcatttcatttcaca i panTro4.chr1_GL389091_random C 0 C 0 e ponAbe2.chrUn 5703414 0 + 72422247 C e nomLeu3.chr19 44880696 132 - 81552678 I a score=41096.000000 s hg38.chr1_KI270765v1_alt 149106 299 + 185285 atttcatttcatcatttcatttcatcattccatttcatca--------catttcatcatttcatcatttcacttcatctcatcatatcatctttcattgcattatttcatttcatctcatcatttcatttcatcatt---tcacttcatctcatcatttcatcacatcatttcatttcatctcatcatttcatttcatcttttcgtctcctcatttcatttaatcatttcgtttcttttcacct--tttcatctcatcatttcatttaatcatttcgtttcttttcaccttttcatctcatcatttcatcaa s panTro4.chr1_GL389091_random 171840 232 + 179278 atttcatttcatcatttcatttcatcattccatttcatcatttcattacatttcatcatttcatcatttcacttcatctcatcatatcatccttcattgctttatttcatttcatctcatcatttcatttcatcatt---tcacttcatctcatcatttcat---------------------------------------------------------------------------ttcatct--tttcatctcctcatttcatttaatcatttcgtttcatttcaccttttcatctcatcatttcatcag i panTro4.chr1_GL389091_random C 0 C 0 s nomLeu3.chr19 44880828 282 - 81552678 atttcattatttcacttcatttcatcatttcacttcatca--------tttcacatcatttcatcatttcatatcatttcatcat-------ttcacttcatcatttcatttcatttcaccatttcacttcatcatttcatcatttcatttcactatttcatttcatcatttca--tcattccatcctttcatttcatcattttatttcatcctttcatttcatcat----------ttcatctcatttcatttcatcctttcatttcatcatttcatctcatttcatctcatcatttcatc---tcatcac i nomLeu3.chr19 I 132 C 0 e ponAbe2.chrUn 5703414 0 + 72422247 C a score=273743.000000 s hg38.chr1_KI270765v1_alt 149405 657 + 185285 ttcatcatttaatttcattttttcgtcatttcatca-ttcacttcatttcatttcatttcatcatttcata-catttcctcaattcatcatttcatgttttcatttcatttcatcatttcat--catttca--------tttcacttcattatttcatttc---atttcatttcaccattttatgtcatcatttcat---t---tttcatcattccatttcatcatttcatttcatttca-------tca-----tcatttcatctcattatttcatttcttcatttcatcatttcgtt---tcatttcatc-------------atttcatcatttcatttcatcatttcatcatttcatTTCATTTCAGTGATACATGTATTTAATTGCTAATGCGATGCCCAGGAGACACCCTATTTCCCTTTCTAAAACACCTCCTTCAACAAAAGGCAACTTCTCATGGCTGGCTAAGTCTACAGGGATAGCAGCCTCTCCTCAACCACCCAATTTCATTTAAAACCTCAAACAGCACCTCAGTTTCATAAAAACCTAAAACATAAACACAACACTTGGTTGTAAGTGAGCCGACAGTTTCTTGTCTCTTTCTCTGCTCAAGGCTTAAGGCTGTGTCTCCCCAACTACATTCAGTGGAAGAGAAGA-TCCCATGGACAAATAAGTTTGAGAATTGTTGTTGCAGGAATTCTC s panTro4.chr1_GL389091_random 172072 641 + 179278 ttcatcatttaatttcattttttcatcatttcatca-ttcacttcatttcat----------catttcatatcatttcctcaattcaccatttcat-ctttcatttcatttcatcatttcatttcatttcacttcattatttcatttcattatttcatttc---atttcatttcaccattttatgtcatcatttcatcatt---tttcatcattccatttcatcatttcatttcat------------ca-----tcatttcatctcattatttcatttcttcattgcatcatttcgtt---tcatttcatc-------------atttcatcatctcat-------------cagttcatttcatttcattGATACATGTATTTAATTGCTAATGCGATGCCCAGAAGACACCCTATTTCCCTTTGTAAAACACCTCCTTCAACAAAAGGCAACTTCTCATGGCTGGCTAAGTCTACAGGGATACCAGCCTCTCTTCAACCACCCAATTTCATTTAGAACCTCAAACAGCACCTCAGTTTCATAAAAACCTAAAACACAAACACAACACTTGGTTGTAAGTGAGCCAACAGTTTCTTGTCTCTTTCTC-GCTCAAGGCTTAAGGCCGTGTCTCCCCAACTACATTCAGTGGAAGAAAAGA-CCCCATGGACAAATAAGTTTGAGAATTGTTGTTGCAGGAATTCTC i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 5703414 679 + 72422247 ttcatcattgaatc---atttcacttcatttcatcatttcgtttcatttcat----------catttcatatcatttcttcatttcatgatttgatcttttcatttcatttcatcatttcatttcatttca-----tcatttcacttcatcatttcatttcctgatttcatttcaccatttcagttcgtcatttcatcatttcatttcatcattccatttcatcatttcatttcatttca--tcatttca-----tcatttcatctcatcatttcatcctttcatttcattatttcatttcatcatttcatctcatcat---tttatttcatcatttcatttcatcatttcatcatttcatttcatttcaGTGATAAATGTATTTAAGTGCTAATGTGATGCCCAGGAGACACCCTATTTCCCTTTGTAAAGCACCTCCTTCAACAAAAGGCAACCTCTCATGGCTAGCTAAGTCTACAGGGATACCAGCCTCTCTTCAACCACCCAATTTCATTTAGAACCTCAAACAGCACCTCAGTTTCATAAAAACCAAAAACATAAACACAATACTTGGTTGTAAGTGAGCCAACAGTTTCTTGTCTCTTTCTCTGCTCAAGGCTTAAGGCCGTGTCTCCCCAATTACGTTCAGTGGAAGAAAAGATTCCCCTGGACAAATAAGTTTGAGAACTGTTGTTGCAGGAGTTCTC i ponAbe2.chrUn C 0 T 42027 s nomLeu3.chr19 44881110 674 - 81552678 ttcatcatttcatttc-atttcacttcatctcatca-----tttcatctcat----------gatttcatttcatctcatcatttcatctcttcatctcataatttcatt---tcatttcatttcatttca-----tcttttcatctcatcatttcatttc---att--atttcatcatttcatttcatcatttcatctcatcatttcatctcatcacttcatcatttcatttcatttcatttcatctcatgatttcatttcatctcatcatttcatctcttcatctcgtaatttcatt---tcatttcatttcatcatttcttcatttcatcatttcattttattatttcgtcacttcatttcatttcaGTGACAGATGTATTTAAGTGCTAATGTGATGCCCAGAAGACACCCTATTTCCCTTTGTAAAACACCTCCTTCAACAAAAGGCAACCTCTCATGGCTGGCTAAGTCTACAGAGATACCAGCCTCTCTTCAACCACCCAATTTGATTTGGAACCTCAAACGGCACCTCAGTTTCATAAAAACCTAAAACATAAACACAACACTTGGTTGTAAATGAGCCAACAGTTTCTTGTCTCTTTCTCTATTCAAGGCTTAAGGCCGTGTCTCCCCAACTACGTTCAGTGGAAGAAAAGA-TCCCCTGGACAAAAAGGTTTGAGAACTGTTGTTGCAGGACTTTTC i nomLeu3.chr19 C 0 C 0 a score=1096373.000000 s hg38.chr1_KI270765v1_alt 150062 2186 + 185285 AGAACTTTCAAAACACAAATCTTCATCCGCAGGGATCTTCAGGAGGGAGATGGCTGATGCAGCACAACTTTCTTTCAGAGGAGTATCTTGCAGAATACAGTATGAGATACAGAAAGGCTGCATTGAGTCTTTTTAATGGCCCGGGCCTTGGTGAGGGTGGGGTAGGAGCTCTCCAGATAGCATCTAATGAGTAGGAACATTCAGGTGGCTTTTTTTTTTTTCCTTATTCGCAAAACTGTGTGTACACCATGAATGAAGCTGGTCTCCCTTATCCACGTCAAAACTAAACCTAAATTAATTGGCTAAATTGGGACTCAACACCTCCAGGAGCCACGCGGCAGAAAGCCCCAACACACTTTAAATTAGCTTGCCTCATCATATTTGAGGAAAGCAAAACGCTTATGACCAGTATGCTGCTAATACAAGTCTACAGATAATGCTGTATGAAAAACTAGTTTTCCCAATCATAGCTGGCATAGTCCACATTTTGCATTACACTTTCCCCCCCTTTTTTTAAATTTTAAACACAGGTCTTTTTCTCTTCTTTTTTTCAATTTTAATTAAATTATACAagacggagtctcagtatgttgcccaggctggtcttcaactcctgagctcaagcgatacaaccgtctccgcctcccaaagtgctgagattgcaggcctgagacactgtgcctggccTTAAACACAAATCTTAATTCATTCTTACAATTATTCTGAGGTTACAAAAATGGAAGGGGAAGAAAAATGGCAAGTAGGTAGGCTGACTTCGGCTTCATTATTTGGAAGGACAGTTTGCTCGGTTAAAACACACTACTGCCTACAAAGGCCAAGACAACAGAAAAATACAGACTTACATAAATAGATTTTATATGTGACAGCAGTTTGAATGGAGACTTTTTCAATGC-AATGAGAAACAGCTGTGCTTGGGAATAAATGACAACGAATTTTTTTATCTCAACAGCTGTCCTGAGAGCATGTCTCTACATCTCTACCTGCATTCTGGAATCAGGGAGAAAGCCAAAACGGACGACAAGACACTAGATcagccgtgtccaaccctttgcctacaaggacttttccacctatctgtggtggtgggtagcatgaaaattatgcacaaaactttttttttttt----aaccccatcagctgttgttagcattagtgtattttatgtgcggcccaggagcattcttcttccaatgtggccctgagaagccaaaagactggacacctgtgCACCAGATCAAAAGGCTACTCCTTCTGGAAGCAATTGTAAAGAATTTCTGACATTATCTTGACATGAAAACCAATGGGTAGTGGGACAGAATGCAAAATCTTGAAGAAtttttctt----gtcttttttttttttttttttttttttttgagtcacggtcttgctctgcggcccaggctggagtacactggtgagatcagagctcagtgcaggatcaagtgctcctcccgcctcagccacagtagtagctgggactacagatgcgcacaaccacccctggctaatattttattttttgtagagatggggtctcactatattgtccaggttggtctcaaactccttgactcaagggatccaggaaaggataacaggtgggagccaccacacctggcTATGTGCATGAAC-TTTTAAGACAAACACAAGGCCCCACAAAAGTTAAGGTTTTTCCCACCTAATTTCCAGGGGGATCTTTTGGTGCAAGGCTGAGAAGCCCTTAAAAGTACACAGACAACTCCAAAGATTCAAGACAGTTCATTTGGGCTGAGCCAGCCCACTGGGCAGTCTGACCTTCCAAAAAGACCCACCCATGACATACACCAGATGGCTCTCCAAGAATCTCTTCAGTCCTCAGGGTCCCTAACGTACTGGACAGAGCTAGGAAAGCAAACCCATTTGCTTCTTCCTGCAGGAAACCCCTTGAGGTTAAGACCCCACAATCACATGAGGATGGAGTGGCTCACCCTCAGTCAACAGGCCAGACTCAAGGTGGTAT-AATGTCTTAACCACGGGTGCGGGCCTCCAGGTCTGACTCCCAACTCAGTTCTTCTTTAATAACCACACTTTGTTAATTTTCCTTAACAGGGGTTCCTggcaagtcatttctccctcaggccttcggtttcctcacctacaagatgagagggctggaccagatgGAAATTC s panTro4.chr1_GL389091_random 172713 2174 + 179278 AGAACTTTCAAAACACAAATCCTCATCCGCAGGGATCTTCAGGAGGGAGATGGCTGATGCAGCACAACTTTCTTTCACAGGAGTATCTTGCAGAATACAGTATGAGATACAGAAAGGCTCCATTGAGTCTTTTTAATGACCCGGGCCTTGGTGGGGGTGGGGTAGGAGCTCTCCAGACAGCATCTAATGAGTAGGAACATTCAGGTGGCTTTTTTTTT---CCTTATTGGCAAAACTGTGTGTACACCATGAATGAAGCTGGTCTCCCTTATCCATGTCAAAACTAAACCCAAATTAATTGGCTAAATTGGGACTCAACACCTCCAGAAGCCACGCGGCAGGAAGCCCCAACACACTTTAAATTAGCTTACCTCATCATATTTGAGGAAAGCAAAACGCTTATGACCACTATGCTGCTAATACAAGTCTACAGATAATGCTGTATGAAAAACTAGTTTTCCCAATCATAGCTGGCATAGTCCACATTTTGCATTACACTTTCCCCCG-TTTTTTTAAATTTTAAACACAGGTCTTTTTCTCTTCTTTTTTTCAATTTTAATTAAATTATACAagaccgagtctcagtatgttgcccaggctgctcttcaactcctgagctcaagcgatacagctgtctccgcctcccaaagtgctgagattgcaggcctgagacactgtgcctggccTTAAACACAAATCTTAATTCATTCTTACAATTATTCTGAGATTACAAAAATGGAAGGGGAAGAAAAATGGCAAGTAGGTAGGCTGACTTCGGCTTCATTATTTGGAAGGACAGTTTGCTCGGTTAAAACACACTACTGCCTACAAAGGCCAAGACAACAGAAAAATACAGACTTACATAAATAGATTTTATATGTGACAGCAGTTTGAATGGAGACTTTTTCAATGC-AATGAGAAACAGCTGTGCTTGGGAATAAATGACAACGAATTTTTTTATCTCAACAGCTGTCCTGAGAGCATGTCTCTACATCTCTACCTGCATTCTGGAATCAGGGAGAAAGCCAAAACGGACGACAAGACACTAGATcagccgtgtccaaccctttgactacaaggacttttccacctatctgtggtggtgggtagcatgaaaattatgcacaaacctttttttttttt--ttaacctcatcagctgttgttagcattcatgtattttatgtgcggcccaggagcattcttcttccaatgtggccctgagaagccaaaagactggacacctgtgCACTAGATCAGAAGGCTACTCCTTCTGGAAGCAATTGTAAAGAATTTCTGACATTATCTTGACATGAAAACCAATGGATAGTGGGATAGAATGCAAAATCTTCAACAAtttttctt----gtcttttttttttttttttt---------gagtcacggtcttgctctgtggcccaggctggagtacactggtgagatcagagctcagtgcaggatcaagtgctcctcccgcctcagccacagtagtagctgggactagagatgcgcacaaccacccc-ggctaatattttattttttgtagagatggggtctcattatattgtccaggttggtctcaaactccttgactcaagggatccaggaaaggataacaggtgggagccaccacacctggcTATGTGCATGAAC-TTTTAAGACAAACACAAGGCCCCACAAAAGTTAAGGTTTTTCCCACCTAATTTCCAGGGGGATCTTTTGGTGCAAGGCTGAGAAGCCCTTAAAAGTACACAGACAACTCCAAAGATTCAAGACAGTTCATTCGGGCTGAGCCAGCCCACTGGGCAGACTGACCTTCAAAAAAGACCCACCCATGACATACACCAGATGGCTCTCCAAGAGTCTCTTCAGTCCTCAGAGTCCCTAACGTACTGGACAGAGCTAGGAAAGCAAACCCATTTGCTTCTTCCCGCAGGAAACCCCTTGAGGTTAAGACCCCACAATCACATGAGGATGGAGCGGCTCACCCTCAGTCAACAGGCCAGACTCAAGGTGGTAT-AATGTCTTCAACAAGGGTGCGGGCCTCCAGGTCTGACTCCCAACTCAGTTCTTCTTTAATAACCACACTTTGTTAATTTTCCTTAACAGGGGTTCCTggcaagtcatttctccctcaggcctttggtttcctcacctacaagatgagagggctggaccagatgGAAATTC i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 5662066 2184 + 72422247 AGAACCTTTAAAACACAAATCCTCATCCGCAGGGATCTTCAGGAGGGAGATGGCTGATGCAGCACAACTTTCTTTCACAGGAGCATCTTGCAGAATACAGTACGAGATACACAAAGGCTGCATTGAGTCTTTTTAAGGTCCTGGGCCTTTGTGGGGGTGGGGTAGGAGCTCTCCAGATAGCATCTAATGAGTAGGAACATTCAGGTTGCTTTTTTTTT--TCCTTACTGGCAAAACTGTGGGTGCATCATGAATGAAGCTGGTCTCCCTTATCCATATCAAAACTAAACCCAAATTAATTGGCTAAATTGGGACTCAACACCTCCGGCAGCCACGCGGAAGAAAGCCCCACCACACTTTAAAGTAGCTTACCTCATCATATTTGAGGAAAGCAAAACGCTTATGACCAGTATGCTGCTAATACAAGTCTACTGATAATGCTGTATGAAAAATTATTTTTCCCAATCATAGGTGGCACAGTCCACATTTTGCATTACACTTTCCCCCCTTTTTTTTAAATTTTAAACACAGGTCCTTTTCTCTTCtttttttaaattttaatttaattataCAagacggagtctcagtatgttgcccaggctggtcttgaactcctgagctcaagcgatacatccatctccccctcccaaagtgctgggattacaggcctgagacactgtgcccggccTTAAACACAAATCTTAATTCATTCTTACAATTATCCTGAGGTTAGAAAAATGGAAGGGGAAGAAAAACGGCAAGCAGGTAGGCTGACTTTGGCTTCATTATTTGGAAGGGCAGTTTGCTCGGTTAAAACACACTACTGCCCACAAAGGCCAAGACAACAGAAAAATACAGACTTATATAAATAGATTT--TATGTGACAGCAGTTTGAATGAAGACTTTTTCAATGCAAATGACAAACAGCTGTCCTTGGGAATAAATGACAACGAATTTTTTTATCTCAACAGCTGTCCTGAGAGCACGTCTCTACATCTCTACCTGTATTCTGGAATCAGGGAGAAAGCCAAAACGGACGACAAGACACTAGATcagccatgtccaaccctttgactacaaggacttttccacctgtctgtggtggtgggtatcatgaaaattatgcacaaacctttttttttttt-tttaagctcatcagctgttgttagcattagtgtattttatgtgtggcccaggagcattcttcttccaatgtggccctgagaagccaaaagactggacacctgtgCACTAGATCAAAAGACTACTCCTTCTGGAAGCAATTGTAAAGAATTTCTGACATTATCTTGACATGAAAACCAATGGATAGTGGGACAGAATGCAAAATCTTCAAGAATTTTTCTTGTTGGttttttttttttttttttttttttttttgagtcaaggtgttgctctgtggcccaggctggagtacactggtgagatcacagctcagtgcaggctcaagtgctcctcccgcctcagccacagtagtagctgggactacagatgcgcacaaccacacctggctaatattttattttttgtagggggggggtctcactgtattgtccagcttggtctcaaactccttgactcaagggatccaggacaggataacaggtgtgagccaccacacctggtcATGTGCATGAAC-TTTTAAGACAAACACAAGGCCCCACAAAAGGTAAGG-TTTTCCCACCTAATTTCCA--GGGACCTTTTGGTGCAAGGATGAGAAGCCCTTAAAACTACACAGACAACTCCAAAGATTCAAGAGAGTTCATTCGGGCTGAGCCAGCCCACTGGGCAGACTGACCTTCAAGAAAGGCCCACCCATGACATACACCAGATGGCTCTCCCAGAATCTCTTCGGTCCTCAGGGTCCCTAAGGTACTGGACAGAGCTAGGAAAGCAAACCGATTTCCTTCTTCCTGCACGAAACCCCTTGAGGTCAAGACCCCACAATCAGACGA----GGAGTGGCTCACCCTCAGTCAACAGGCCAGACTCAAGGTGGTATAAATGTCTTAACCAAGAGTGTGGGGCTCCAGGTCTGACTCCCAACTCAGTGCTCCTTTAATAACCACATTTTGTTAATTCTCCTTAACAGGGGTTCCTggcaagtcagttctccctcaggccttcggtttcctcacctacaagatgagagagctggaccagatgGAAATTC i ponAbe2.chrUn T 42027 C 0 s nomLeu3.chr19 44881784 2164 - 81552678 AGAACCTTTAAAACACAAATCCTCATCCGCAGGGATCTTCAGGAGAGAGATGGCTGATGCAGCACAACTTTCTTTCACAGGAGCATCATGCAGAATACAGTATGAGATACAGAAAGGCTGCATTGAGTCTTTTGAAGGGCCCGGGGCTTGGTGGGGGTTAGTTAGGAGATCTCCAGAGAGCATCTAATGAGTAGGAACATTCAGGTTGCTTTTTTTTT---CCTTATTGGCAAAACTGTGTGTGCACCATGAATGAAGCTGGTCTCTCTTATCCATATCAAAACTAAATCCAAATTAATTGGCTAAATTGGGACTCAACACCTCCAGGAGCCACGCGGAAGGAAGCCCCACCACACTTTAAAGTAGCTTACCTCATCATATTTGAGGAAAGCAAAACGCTTATGACCAGTATGCTGCTAATACAAGTCCACATATAATGCTGTGTGAAAAATTACTTTTCCCAATCATAGCTGGCACAGTCCACATTTTGCATTACACTTACCCCCC--TTTTTAAAATTTTAAACACAGGTCTTTTTCTCTTCTT------AATTTT-----AATTATACAaggcggagtctcagtatgttgcccaggctggtcttgaactcctgagctcaagctgtacatccgtctccgcctcccaaagtgctgggattacaggcctgagacactgtgcccggccTTAAACACAAATCTTAATTCATTCTTACAATTATCCTGAGGTTAGAAAAATGGAAGGGGAAGAAAAATGGCAAGCAGGTAGGATGACTTCGGCTTCATTATTTGGAAGGACAGTTTGCTCGGTTAAAACACATTACTGCCCACAAAGCCCAAGACAACAGAAAAATACAGACTTACATAAATAGATTTTATATGTGACAGCAGTTTGAATGGAGACTTTTTCAATGCGAATGACAAACAGCTGTGCTTGGGAATAAATGACAACGAATTTTTTTATCTCAACAGCTGTCCTGAGAGCACGTCTCTACATCTCTACCTGCACTCTGGAATCAGGGAGAAAGCCAAAATGGATGCCAAGACAATAGATcagccgtgtccaaccctttgactacaaggacttttccgcctatctgtggtggtgggtatcatgaaaattatgcacaaaccttttttttttttttttaagctcatcagctatcattagcattagtgtattttatatgtggcccaagagcattcttcttccaatgtggccctgagaagccaaaagactggacacctgtgCACTAGATTAAAAGGCTACTCCTTCTGGAAGCAATTGTAAAGAATTTTTGACATCATCTTGACATGAAAACCAATGGATAGTGGGACAGAATGCAAAATCTGCAAAAAtttttctt----gtttttttttttttttttt----------gattcaaggtcttgctctgtggcccaggctggaatacaatggtgagatcacagctcagtgcaggctcaagtgctcctcccgcctcagccactgtagtagctgggactacaggtgcgcacagccacccctggttaatattttattttttgtagagacaggatctcactatattgtccaggttggtctcaaactccttgactcaagggatccaggacaggataacaggtgtgagccatcatacctggccAAGTGCATGAACTTTTTAAGACAAACACAAGGCCCCACAAACATTAAGG-TTTTCCCACCTAATTTCCA-GGGGATCTTTTGGTGCAAGGATGAGAAGCCCTTAAAAGTACACAGACAACTCCAAAGAATCAAGACAGTTCATTCGGGCTGAGCCAGCCCACTGGGCAGGCTGACCTTCAAGAAAGGCCCACCCATGACACACACCAGATAGCTCTCCAAGAACCTCTCCAGTCCTCAGGGTCCCTAAGGTACTGGACAGAGCTAGGAAAACAAACCCATTTGCTTCTTCCTGCAGAAAACCCCTTGAGGTCAAGACCCCACAATCAGACGAGGATGCAGTGGCTCACCCTCAGTCAACAGGCCACACTCAAGGTGGTAC-AATGTCTTAACCAAGGGTGTGGGCCTCCAGGTCTGACTCCCAACTCAGTGCTCCTTTAATAACCACCCTTTGTTAATTCTCCTTAACAGGGGTTCCTggcaagtcagttctccctcaggccttcagtttcctcacctgcaagatgagagggctggaccacatggaaattc i nomLeu3.chr19 C 0 I 7629 a score=302496.000000 s hg38.chr1_KI270765v1_alt 152248 666 + 185285 AGGGGGTAAGGGGATGTCCTCACGCAGCCCACCCCCACCCCCAC---GGGACCCTGGAGCCTCCATCCCAGTTCCCACCACGCACCCGCTCCACAAATCCTGCCCAAGGTGAGGGCTGGTCC---TGGGTCCTCTGGCTGCCGCATCAGCGAGTGCAGGAGGGAGGGGAAGCCTCCAAGGGGGTGACGTGGGCTCAAAGATGCAACTCGGCCAGGAGTGAACTGGGGCCCCGAAGGAGGTGTCCGGGCCGCTCCTGGAGCCCAGCCCGGGTCCCCGAACCCCTTACCTCCGGGGTCTGTATCTCCTGCTGGGTGAGGTCGTTGGACACAGCGCACTTGGTGCACAGCCCGCACAGGCTGCCAATGAAGATGACGATGAGCTTCTGGAGCTGCCCGCACTGCTGCAGCGCCCGGCTGGCCGCAGCCCCTGTGCCACCCTCCGTGTCCGCCACATCACCCCCACCACCGCCCTCCTTCTTCTCTCCCATCGCCTCCACAG---------------------------------------------GCAGCGCCACTCTATGCAGGCCACAGGGGCCTAGGCAAGGAGCCTGGGGCGCCGGC--------------GCCTAGGCAAGGAATCCCTGAGCCAGGAGAGCTGGACCAGGAGCACCCCTCAGCGCTGCCCTTGCCAGGACGCCAGTAGAGCTGGCAGCCGAGTCTGCCGCTCCCGCCCTCAGAGCCG s panTro4.chr1_GL389091_random 174887 666 + 179278 AGGGGGTAAGGGGATGTCCTCGCGCAGCCCACCCCCACCCCCAC---AGGACCCTGGAGCCTCCATCCCAGTTCCCACCACGCACCCGCTCCACAAATCCTGCCCAAGGTGATGGCTGGTCC---CGGGTCCTCTGGCTGCCGTGTCAGTGAGTGCAGGAGGGAGGGGAAGCCTCCAAGGGGGTGACGTGGGCTCAAGGATGCAACTCGGCCAGGAGTGAACTGGGGCCCCGAAGGAGGTGTCTGGGCCGCTCCTGGAGCCCAGCCCGGGTCCCCGAACCCCTTACCTCCAGGGTCTGTATCTCCTGCTGGGTGAGGTCGTTGGACACAGCGCACTTGGTGCACAGCCCGCACAGGCTGCCAATGAAGATGACGATGAGCTTCTGGAGCTGCTCGCACTGCTGCAGCGCCCGGCTGGCCGCAGCCCCTGAGCCACCCTCCGTGGCCGCCGCATCACCCCCGCCACCGCCCTCCTTCTTCTCTCCCATCGCCTCCGCAG---------------------------------------------GCAGCGCCGCTCTATACAGGCCACAGGGGCCTAGGCAAGGAGCCCAGGGCGCCGGC--------------GCCTAGGCAAGGAATCCCTGAGCCAGGAGAGCTGGACCAGGAGCACCCCTCGGCGCTGCCCTTGCCAGGACGCCAGTAGAGCTGGCAGCCGAGTCTGCTGCTCCCGCCCTCAGAGCCG i panTro4.chr1_GL389091_random C 0 M 851 s ponAbe2.chrUn 5664250 715 + 72422247 GGGGGGTAAGGGGATGTTCGCGCGCAGTCCACCCCCCCCCCCCCCAAGAGACCCTAAAGCCTCCATCCCAGTTCCCACCACGCACCCGCCACACAAATCCTCCCCAAGGTGAGGGCTGGTCCGAAAGGGTCCTCCGGCTGCCGCATCAGCGAGTGCAGGAGGGAGGGGAAGCCTCCAAGGGCGCGACGCGGGCTCAAGGATGCAACTCGGCCAGGAGTGAACTGGGACCCCGAGGGAGGTGTCCAGGCCGCTCCTCGAGCCCAGCCCGGGTCCCCGAACCGCTTCCCTCCAGGCTCCCTATCTCCTGCTGGGTGAGGTCGTTGGACACAGCGTACTTGGTGCGCAGCCCGCGCAGGCTGCAAATGTCTATGCCGATGAGCTTCTGGAGCTGCCCGCACTGCTGCAGCGCCGGGCTGgcctcggccgctgcgccaccctcagcggccgccgcatcacctccgccaccgccctccttcttctctcccatcgcctccgccgcatcaccgccgccaccgccCTCCTTCTCTCCCATCGCCTCCGCGCGCAGCG-CGCTCTATGCAGGCCACAGCGGCCGAGGCAGGGAGCCCGGGGT-CGGGC--------------CCCTAGGCAAGGAACCCCCGAGCCGGGAGAGTAGGACCGGGAGCGCCCTTCGGCGCTGCCCTTGCCAGGACGCCAGTAGAGCTGGCAGCGGAGTCTGCCGCTCCCGCCCTCAGAGCCG i ponAbe2.chrUn C 0 C 0 s nomLeu3.chr19 44891577 675 - 81552678 AAGGGGGGAGGGGATGTCCGCGCGCACCCCACCCCAA---CCAC---GGGCCCCTGGAGCCTCCATCCCAGTTCCCACCACGCACCCACCCCACAAATCCTGCCCAAGGTGAGGGATGGTCC---CGGGTCCTCCGGCTGCCGCATCAGCGAGTGCAGGAGGGAGGGGAAGCTTCCAAGGCGGCGACGCGGGCTCAAAGACGCAACTGGGCCAGGAGTGAACTAGGG-CCGGAGGGAGGTGTCCGCGCCGCTCCTCGACCCCAGCCCCGGTGCCCGACCCACTTACCTCCAGGTTCCGTATCTCCTGCTGGGTGAGGTCTTTGGACACAGCGCACTTGGTGCGCAGCCCGCGCAGGCTGCCGATAGAGATGTCGATGAGCTT-GGGAGCTGCCCGCACTGCTGCAACGCCCGGCTAGCCGCGGCCCATGCGCCTCCTTCCGCGGCCGCAGCATCACCCCCGCCACCGCCATCATTCTTCTCTCCCATCGCCGCCGCGC---------------------------------------------GCAGCGCCGCTCTATGCAGGCCGCGGCGGCCGAGGCGGGGAGCCCGGGGCGCGGGCCCGGGACGCGTCGGGCCTCGGCAAGGAACCCCCGAGCCGGGAGAGCTGGACCAGGAGCGCCCCTCGGCGCTGCCCGAGCCGGAACGCCGGTAGAGCTGGCAGCCGAGTCTGCCGTTCCCGCCCTCGGAGCCA i nomLeu3.chr19 I 7629 C 0 a score=1838.000000 s hg38.chr1_KI270765v1_alt 152914 7 + 185285 TGGCGGC s ponAbe2.chrUn 5664965 7 + 72422247 CGGCGGC i ponAbe2.chrUn C 0 I 17 s nomLeu3.chr19 44892252 7 - 81552678 CGGCGGC i nomLeu3.chr19 C 0 C 0 e panTro4.chr1_GL389091_random 175553 851 + 179278 M a score=695.000000 s hg38.chr1_KI270765v1_alt 152921 22 + 185285 GGGGACAAAAATCCTCGGCGGC s nomLeu3.chr19 44892259 15 - 81552678 -------AAAAGCCGCGGCGAC i nomLeu3.chr19 C 0 N 0 e ponAbe2.chrUn 5664972 17 + 72422247 I e panTro4.chr1_GL389091_random 175553 851 + 179278 M a score=0.000000 s hg38.chr1_KI270765v1_alt 152943 340 + 185285 GGGGGCAAAACGCCGCGGCGGCGAAAAAGTCGCTGCGGCAGGGGGACAAAAAGCCGTGACAGCGGGGCGCAAAAAGCCGCGGCGGGTAAAAGGCCGTGGCGAGTAAAAAGCCGCGATGGCAAAAAGCCGCGGCGGGCAAAAAGCCACGGCGGCGGTGGGGCAAAAAGCAGCGGCGGTGGCGGAGGGGCAAAAAGCCGCGGCAGCGAGGGGGCAGAAAGCCGCGGCGGCAAAAAGCCAAGGTGGCGAGTGTGCAAAAAGCTGTGTCGGCGGTGGGGCAAAAAGCCGCGGCGGCAGAGGGGCAAAAAGCCGCGGCGGCGGGTGTGTGGCAGAAAGCCGCGGC e ponAbe2.chrUn 5664972 17 + 72422247 I e panTro4.chr1_GL389091_random 175553 851 + 179278 M a score=3213.000000 s hg38.chr1_KI270765v1_alt 153283 42 + 185285 GGGCAAAAAGCCGCGGCGGCGAGGGGGGCACAAAGCCGCGGC s panTro4.chr1_GL389091_random 176420 42 + 179278 GGGCAAACAGCCGCGGCGGCGGGTGGGGGACAAAGCCGCAGC i panTro4.chr1_GL389091_random M 851 C 0 e ponAbe2.chrUn 5664972 17 + 72422247 I a score=4499.000000 s hg38.chr1_KI270765v1_alt 153325 20 + 185285 GGGCAAAAAGCCGCGGCGGC s panTro4.chr1_GL389091_random 176462 20 + 179278 GGGCCAAAAGCCAGGGCGGC i panTro4.chr1_GL389091_random C 0 I 57 s ponAbe2.chrUn 5664989 20 + 72422247 GGGCAGAAAGCCGCGGCGGC i ponAbe2.chrUn I 17 C 0 a score=500.000000 s hg38.chr1_KI270765v1_alt 153345 5 + 185285 GCGGG s ponAbe2.chrUn 5665009 5 + 72422247 GCGGG i ponAbe2.chrUn C 0 I 17 e panTro4.chr1_GL389091_random 176482 57 + 179278 I a score=0.000000 s hg38.chr1_KI270765v1_alt 153350 37 + 185285 GTAAAAAGCCGCGGCGGGCAAGAAGCCGAGGCGGGGT e ponAbe2.chrUn 5665014 17 + 72422247 I e panTro4.chr1_GL389091_random 176482 57 + 179278 I a score=2424.000000 s hg38.chr1_KI270765v1_alt 153387 26 + 185285 GGGGGCAAAAAGCCGCGGCGGCGGGG s ponAbe2.chrUn 5665031 26 + 72422247 GGGGGCAAAAAGTCGCGGCGGCGGGG i ponAbe2.chrUn I 17 I 28 e panTro4.chr1_GL389091_random 176482 57 + 179278 I a score=0.000000 s hg38.chr1_KI270765v1_alt 153413 132 + 185285 GGCAAAAAGCTGTGGCGGGTAAAAGGCCGCGGGGGCAGGGGGGAAAAGCCACGGCGGGGAAAAAGCCGCGGCGGCGGGGTGCGAAAAGCGGCGGGGTAAAAAGCCGCGGCTGGCAAAAAGCCGAGGCAGGGT e ponAbe2.chrUn 5665057 28 + 72422247 I e panTro4.chr1_GL389091_random 176482 57 + 179278 I a score=2055.000000 s hg38.chr1_KI270765v1_alt 153545 21 + 185285 GGGGGCAAAAAGCCGCGGCGG s ponAbe2.chrUn 5665085 21 + 72422247 GGGGGCAAAAAGCCGCGGCGG i ponAbe2.chrUn I 28 I 305 e panTro4.chr1_GL389091_random 176482 57 + 179278 I a score=0.000000 s hg38.chr1_KI270765v1_alt 153566 60 + 185285 GGAAAAAGCTGCGGCGGCGGGGGGTAAAAAGCCGAGGCGGGCAACAAGCCGAGGTGGGGT e ponAbe2.chrUn 5665106 305 + 72422247 I e panTro4.chr1_GL389091_random 176482 57 + 179278 I a score=3897.000000 s hg38.chr1_KI270765v1_alt 153626 61 + 185285 GGGGGCAAAAAGCCGCGGCGGGCAAAAAGCCGAGGCGGCGTGGGGGCAAAAAGCCGCGGCG s ponAbe2.chrUn 5665411 58 + 72422247 GGGGGCAAAAAGCCGCGGC-GGCAAAAAGCCCCGGCGGC--GGGCTCAAAAAGCCGCGGCG i ponAbe2.chrUn I 305 I 133 e panTro4.chr1_GL389091_random 176482 57 + 179278 I a score=0.000000 s hg38.chr1_KI270765v1_alt 153687 122 + 185285 GGTGAAAAGTCGCGGGGGCAGGGGGGAAAAATCCACGGCGGGAAAAAGCCGCGGCGGCGAGGGGGCAAAAAGCTGCGGGGATGCCAAAAGCGGCGGGGTGCAAAAGGCGGCGGGGGGCAAAA e ponAbe2.chrUn 5665469 133 + 72422247 I e panTro4.chr1_GL389091_random 176482 57 + 179278 I a score=2215.000000 s hg38.chr1_KI270765v1_alt 153809 24 + 185285 GGCGGCGGGGGGCAAAAAGCCGCA s ponAbe2.chrUn 5665602 24 + 72422247 GGCGGCGGGGAGCAAAAAGCCGCA i ponAbe2.chrUn I 133 I 78 e panTro4.chr1_GL389091_random 176482 57 + 179278 I a score=0.000000 s hg38.chr1_KI270765v1_alt 153833 168 + 185285 GCGGCGGGGGGCGGGCAAAAAGCCGCGGCGACAAAATTCGCAACGGCGAGGGGTCAAAAAGCCGGGGCGGACTAAAAGCCCTGGCGCCGGGGGGGCACAAAGCCGCGGCGGCGGTGGGGCAAAAAGCCGCAGCGGCGGGTGGGGGCAGAAAGCCGCAGCGGCGATGGG e ponAbe2.chrUn 5665626 78 + 72422247 I e panTro4.chr1_GL389091_random 176482 57 + 179278 I a score=2648.000000 s hg38.chr1_KI270765v1_alt 154001 30 + 185285 GCAAAAAGCCACGGCGGCGGGGGTAAAAAG s ponAbe2.chrUn 5665704 30 + 72422247 GCAAAAAGCCGCGGCGGCGGGGGCAAAAAG i ponAbe2.chrUn I 78 I 36 e panTro4.chr1_GL389091_random 176482 57 + 179278 I a score=0.000000 s hg38.chr1_KI270765v1_alt 154031 27 + 185285 CCGCTGCGGGCAAAAAGTCGCGGCGGC e ponAbe2.chrUn 5665734 36 + 72422247 I e panTro4.chr1_GL389091_random 176482 57 + 179278 I a score=4028.000000 s hg38.chr1_KI270765v1_alt 154058 65 + 185285 GGGGACAAAAAGGCGCGGCGGGCAAAAAGCCTAGGCGGGATGGGGGGAATAAgccgcggcggc-gg s panTro4.chr1_GL389091_random 176539 66 + 179278 GGGGGCAAAAAGCTGCCGCAGGCAAAAAGCCGAGGCGCAGTGGGGGGAAAAAGCCGCAGCGGCAGG i panTro4.chr1_GL389091_random I 57 C 0 e ponAbe2.chrUn 5665734 36 + 72422247 I a score=377562.000000 s hg38.chr1_KI270765v1_alt 154123 1488 + 185285 gggggcaaaaagccgcggcggcgg----cggaggGCGAAATAATGGAGATGGAGTGGAAGGCCGGCACAGCTTGGCATTGCTGGAGTGCGATGTGATAGGAAATGTGCAGCCAAAGACAAAAA--GATGTAAGTAGGCTTGACTCATTGAAGCTAAGAACCCAGATGTTATCTTGAGGGTATTAACTAATAAGCAGTTTAAATCAGAATGGCACATTCTGATTTGTTTCTTGTACGTTCACATTTGGCAGGCATAGATACTGTTTGAAGAGAGAAAAGTCAGTAGAGAGAGGTAACAAACTTAAATATGTGCCAAGTCTAGAAACAAGAGACCAGGGGGATAGGGACCTTTCAAAATAAAATGCAAGATTTGAAAACTGATTGGCTGGGGGATGAGGAAAAGGCAGGTCTTTAAGGTCCACCCCTGTTTTGCTTTAAGTTGTTAGGGGGTGGTTTTATCACATGTTGTAGAATATGTCATTTCAGTTTTGAACATCTTGAGTTAAATTGTCCTAGCATATCTTATGAATTTGATTTTCTTCCCTGGAAAGCTAATATTTCAAACACTTAAAGAGTATATAGATTTCCAACTTGTATCCAGTTTATAAAACTATCTCTAGGCTGCTGATTTCAGGAGGAGGCTTATGAGTATTCTCCTTGCAGAGAATATATCAGGAGTTAACAGCAGCTTCAATATTTGTGGATGACCAGTTAACTAAGCCACCTCTTAGTGTCTTTAGTTGGGAAATCTTAGCTGAAGATATTCAATAATGAACCAAGAGTGACTAAGAAATTCAATA-TTTAAGTATATTTCATTGTAATTAATTTGAATTGAAGTAGCCATATACAGCTAGTATTTACTATATTGAACAATGCAAATAAGAGGAAAAAATTAATAACCATCTCTAATACCACATGCCAAAATCCTCATCAATTTATTCTAGCTAAAGGAGTTGATcagaagcagtagttgaaagcaccaactaaacccagctggggttagttcactgtcattctctcagaaccgtctcttctctgaacaaaacaagtacaagagttcattgtgaatctgcattctccttgcctattttaaggttttgatgttgacgcaaatttgtgaaatccctcctgtggtgtgatatttcgttttCCTTGCTTTGTGTTAGGACAAGAATGCTTCAGCTCTTAATTTAAAATTATGTTTCTCCCTCCTAGGTTGAGTGAACTTAGAATGCATTCTCTGACATATCCAAGATTTTGTTAATATGAATTTCGGGAAAAAAGCATACTTAATTAGCTAAGACGTCTTATTCTAAGCTTGACCCTATGTTCGACATCTTTTGAATTTCTGGTTGCGTGGGCTGCTCTCTGACACTGGTTAGTGACCTGGAAGCTCTATTAATGTTAGGGGAGGTGGTGTATGAGCATTAGAGGTATCCTTGCAAGGAAAGACTTGTCTTATCTCAATACGTCTTTTTTTTT---GCACACAAGAAAG s panTro4.chr1_GL389091_random 176605 1489 + 179278 GGGGGCAAAAAGCCGCGGCGGTGG-----GGGGGGCAAAATAATGGAGATGGGGTAGAAGGCCGGCACAGCTTGGCATTGCTGGAATGCGATGTGATAGGAAATGTGCAGCCAAAGACAAAAAAAGATGTAAGTAGGCTTGACTCATTGAAGCTAAGAACCCAGATGTTATCTGGAGGGTATTAACTAATAAGCAGTTTAAATCAGAATGGCACATTCTGATTTGTTTTTTGTATGTTCACATTTGGCAGGCATAGATACTGTTTGAAGAGAGAAAAGTCAGTAGAGAGAGGTAACAAACTTAAATATGTGCCAAGTCTAGAAACAAGAGACCAGGGGGATAAGGACCTTTCAAAATAAAATGCAAGATTTAAAAACTGATTGGCTGGGGGATGAGGAAAAGGCAGGTCTTTAAGGTCAATCCCTGTTTTGCTTTAAGTTGTTAGGGGGTGGTTTTATCACATGTTGTAGAATATGTCATTTCAGTTTTGAACATCTTGAGTTAAATTGTCCTAACATATC--ATGAATTTGATTTTCTTCCCTGGGAAGCTAATATTTCAAACACTTAAAGAGTATATAGATTTCCAACTTATATCCCGTTTATAAAACTATCTCTAGGCTGCTGATTTCAGGAGGAGGCTCATGAATAGTCTCTTTGCAGAGAATATATCAGGAGTTAACAACAGCTTCAATATTTGTGGACGACCAGTTAACTAAGCCACCTCTTAGTGTCTTTAGTTGGGAAATCTTAGCTGAAGATATTCAATAATGAACCAAGAGTGACTAAAAAATTCAATA-TTTAAGTATATTTCGTTGTAATTAATTTGAATTGAAGTAGCCATATACAGCTAGTATTTACTATATTGAACAACGCAAATAAGAGGAAAAAATTAATAACCATCTCTAATACCACATGCCAAAATCCTCATCAATTTATTCTAGCTAAAGGAGTTGATcagaagcagcagttgaaagcaccaactaaact-agctggggttagttcactgtcattctctcagaaccatctcttctctgaacaaaacaagtacaagagttcattgtgaatctgcattctccttgcctattttaaggttttgatgttgacactaatttgtgaaatccctcctgtggtgtgatatttcgttttCCTTGCTTTCTGTTAGGACAAGAATGCTTCAGCTCTTAATTTAAAATTATGTTTCTCCCTCCTAGGTTGAGTGAACTTAGAATGCATTCTCTGACATATCCAAGATTTTGTTAATATGAATTTCGGGAAAAAAGCATACTTAATTAGCTAAGACGTCTTATTCTAAGCTTGACCCTATGTTCGACATCTTTTGAATTTCTAGTTGCATGGGCTGCTCTCTGACACTGGTTAGTGACCTGGAAGCTATATTAATGTTAAGGGAGGTGGTGTATGAGCATTAGAGGTATCCTTGCAAGGAAAGACTTGTCTTATCTCAATACGTCTTTTTTTTTTTTGCACACAAGAAAG i panTro4.chr1_GL389091_random C 0 C 0 s ponAbe2.chrUn 5665770 1485 + 72422247 GGGGGCAGAAAgccgcggcggggggcgggggggggcAAAATAGTGGAAATGGGGTAGAAGGCCGGCACAGCTTGGCATTGCTGGAGTGTGAGGTGATAGGAAAAGTGCAGCCGAAGACAAAAAAAGATGTAAGTAGACTTGACTCCGTGCAGCTAAGAACCCAGATGTTATCTTGAGGGTATTAACTAATAAGCAGTTTAAATCAGAATGGCACATTCTGATTTGTTTTTTGTATGTTCACATTTGGCAGGCATAGATACTGTTTGAAGAGAGGAAAGTCAGTAGATA----TAACAAACTTAAATATGTGCCAAGTCTAGAAAC--GAGACTAGGGGGATAAGGACCTTTCCAAATAAAATGCAAGATTTGAAAACTGATTGGCTGGGGGATGAGGAAAAGGCAGGTCTTTAAGGTCAATCCCTGTTTTGCTTTAAATTGTTAGGGGGTGGTTTTATCACGTATTGTAGAATATGTCATTTCAGTTTTAAACATCTTGAGTTAAATTGCCCTGACATGTCTTACGAATTTGATTTTCTTCCCTGGGAAGCTGATATTTCAAAAACTTGAAGAG--TATAGATTTCCAACTTGTATCCAATTTATAAAATTATCTCTAGGCTGCTGGTTTCAGGAGGAGGTTCATGAATATTCTATTTGCAGAGAATATATCGGGAGTTAACAACAGCGTCAATATTTGTGGACGACCAGTTAACTAAGCCACCTCTTAGTGTATTTAGATGGGAAATCTTAGCTGAAGATATTCAATAATGAACCAACAGTGACTAAAAAATTCAATATTTTAAGTATATTTCATTGTAATTAATTTGAATTGAAGTAGCTATATACAGCTAGTATTTACTACATTGAACAATGCAAATAAGAGGAAAAAATTAATAACCATGTCTAATACCACATGCCAAAATCCTCATAAATTTATTCTAGCTGAAGGAGTTTATcagaagcagcaattgaaagcaccatctaaacc-agctggggttaattcactgtcattctctcagaaccatctcttctctgaacaaaacaagtagaagagttaattgtgaatctgcattttccttgcctgttttaaggtttcgatgttgacgcttatttgtgaaatccctcctgtggtgtgatatttcgttttccttgctttttgttaggACAAGAATGCTTCAGCTCTTAATTTAAAAT--TGTTTCTCCCTCCTAGGTTGAGTGAACTTAGAATGCATTCTCTGACATATCCAAGTTTTTGTTAATATGAATCTGGGGAAAAAAGCATACTTAATTAGCTAAGACTTCTTATTCTAGGCTTGACCCTGTGTTCGACATCTTTTGAATCTGTAGTTGCATAGGCTGCTCTCTGACACTGGTTAGTGATCTGGAAGCTATATTAACGTTAGGGGAGGTGGTGTGTGAGCATTAGAGGTATCCTTGCAAGGAAAGACTTGTCTTATCTCAATACGTCTTTTTTTTT--TGCACACAAGAAAG i ponAbe2.chrUn I 36 I 244 a score=304057.000000 s hg38.chr1_KI270765v1_alt 155611 1181 + 185285 TCAATGTCTGAGTCTTCTAAAATCTTCCTATTTCCAAATTGCAGATTATGATTGATTCCTAAACAAAGACCTAATTTTTGACTCAGAGACGTGGCAAGCTAGTGAATCACCGTTATAATTTAACAATCTTCAAGATAAAATTA--TCTCTGATATTTAGATTTTGCCCAATTATTAAGATATTTGGGTGTTTCGTTAAGAATGGAAAACTCTAGTCTCTTGAGCAGAGACTATAAAGGCCTCAGATGATCATTTTTAATTTTATGCTCTTTTCTTTAACACCTTCAACACAGTTGGAAGCAGCCGATATTCCGCAGAGTTGTTGTGTTTTTTAAACCAAATGCATGGTTCAGTGGTAGAAAACTGGGCTGATCCAAGCTGTTTTCAGTAAACACTTCATTTCAGGTGACCCATTTCGTATTAAATAATCTCTAGATCCTGTCTTCGAAACTAACTAGATCAGATAAACTACCCTGGATTTTCTCTTTTTAGGGTCTGAGAGCTGCAGTCACTTTTGTGAAAATGATTACAATGACAAGATAGAGTTGTAGATGGGGAAAATGTTTTGACTAATTTAAGCATAGTGG-TATTTCATATGAGAATTTAAGTTACACACATTTGAAAATTATAATGGAGTCTCTTGGCTGAGCTTTAAAAAGAA-ATAGCGTTTAGGCTAAAAAGGGAACTGCTACCTCTCCT-AAAATCAGAAAGATGTTACAGTAATTCTCCATTCTCTAGAATTATCAAGAAGCACCTTTGTGATGATTTACTTTTGCTCTTGCGAGTGTGAGCCCGTGTAGTCGTGGAACCATCAATTAGAATGGTTGCTTTCTGATCCCAAAGTCACTCGTTCTGAAAACAATATTTTTCATAAATTTGAAAGTGAGAAGTTTTGATCTTGCCATTCCCAAGTAACTCTCTTAAGAAGAGGCATCAGCATGCTTCAGTGACAGCTGTCACCTTCCATTGctgagagtcatctttgagttctctatttcactccctacactccaatttagctgcagttctcttggccagtcctatgaaatacatccatggcctaacgacttctcaccactactatcactcatgctgacagcattctcacctaagtcactaccttttttcactggattagagtagcctcccaatttatttgctcacataacctatttattctacac s panTro4.chr1_GL389091_random 178094 1182 + 179278 TCAATGTCTGAGTCTTCTAAAATCTTCCTATTTCCAAATTGCAGATTACGATTGATTCCTAAACAAAGACCTAATTTTTGACTCAGAGACGTGGCAAGGTAGTGAATCACCATTATAATTTAACAATCTTCAAGATAAAATTA--TCTCTGATATTTAGATTTTGCCCAATTATTAAGATATTTGGGTGTTTCGTTAAGAATGGAAGACTCTAGTCTCTTGAGCAGAGACTATAAAGGCCTCAGATGATCATTTTAAATTGTATGCCCTTTTCTTTAACACCTTCAACACAGTTGGAAGCAGCCGATATTCCCCAGAGTTGTTGTGTTTTTTAAACCAAATGCATGGTTCAGTGGTAGAAAACTGGGCTGATCCAAGCTGTTTTCAGTAAACACTTCATTTCAGGTGACCTATTTCATATTAAATAATCTCTAGATCCTGTCTTTGAAACTAACTAGATCAGATAACCTACCCTGGATTTTCTCCTTTTAGGGTCTGTGAGCTGCAGTCACTTTTTTGAAAATGATTGCAATGACAAGATAGAGTTGTAGATGGGGAAAATGTTTTGACTAATTTAAGCATAGTGG-TATTTCATATGAGAATTTAAGTTACACACATTTGAAAATTATAATGGAGTCTCTTGGCTGAGCTTTAAAAAAAACATAGCGTTTAGGCTAAAAAGAGAACTGCTACCTCTCCT-AAAATCAGAAAGATGTTACAGTAATTCTCCATTCTCTAGAATTATCAAGAAGCACCTTTGTGATGATTTACTTTTGCTCTTGGGAGTGTGAGCCCGTGCAGTCGTGGAACCATCAATTAGAATGGTGGCTTTCTGATCCCAAACTCACTCGTTCTGAAAACAATATTTTTCATAAATTTGAAAGTGAGAAGTTTTGATCTTGCCATTCCCAAGTAACTCTCTTAATAAGAGGCATCAGCATGCTTCAGTGACAGCTGTCACCTTCCAGTGctgagagtcatctttgagttctccatttcactccctacactccaatttagctgcagttctcttggccagtcctatgaaatacatccatggcctaacgacttctcaccactactaccactcatcctgacagcattctcacctaagtcactaccttttttctgtggattagagtagcctcccaattggtAAACTCACATAACCTATTTATTCTACAC i panTro4.chr1_GL389091_random C 0 N 0 s ponAbe2.chrUn 5667499 1184 + 72422247 TTAATGTTTGAGTCTTCTAAAATCTTCCTATTTCCAAGTTGCAGAGTACCATTGATTCCTAAACAAAGATCTAATTTTTGACTCAGAGACGTGGCAAGGTAGTGAATCACCATTATAATTTAACAATCTTCAAGATAAAATTATCTCTCTGATGTTTAGATTTTGCCCAATTATTAAGGTGTTTGGGTGTTTCGTTAAGAATGGAAGACTCTAGTCTCTTGAGCAGAGACTATAAAGGCCTCAGATGATCATTTATAATTTTATGCTCTTTTCTTTAACGTCTTTAACACAGTTGGAAGCAGCCAATGTTCCCCAGAGTTGTTGTGTTTTTTAAACCAAATGCATGGTTCAGTGGTGGAAAACTGGGCCGATCCAAGCTGTTTTCAGGAAACACTTCATTTCAGGTGACCTATTTCATATTAAATAATCTCTAGATCCTGTCTTCAAAACTAACTAGATCAGATAACCTACCCTAGATTTTCCCCTTTTAGGGTCTGTTAGCTGCAGTCACTTTTGTGAAAATGATTGCAATGAAAAGATAGAGTTGTAGATGGGGAAAATGTTTTGACTAATTTAAGCATAGTGGTTATTTAATATGAGAATTTAAGTTACACACATTTGAAAATTACAAT-GAGTCTCTTGGCTGAGCTTTAAAAAAAA-ATAGCGTTTAGGCTAAAAAGGGAACTGCTACCTCTCCTAAAAATCAGAAAGACATTACAGTAATTCTCCATTCTCTAAAATTATCAGGAAGCCCCTTTGTGATGATTTACTTTTGCTCTTGGGAGTGTGAGCCTGTGTAGTCGTGGAACCATCAATTAGAATGATGGCTTTCTGATCCCAAAGTCATGCGTTCTGAAAACAATATTTTTCATAAATTTGAAAGTGAGAAGTTTCGATTTTGCCATTCCCAAGTAACTCTCTTAATAAGAGGCATCAGCATGCTTCAGTGACAGCTGTCACCTTCCAGTGctgagagtcatctttgagttctccatttcagtccctacactccagtttagctgcagttctcttggccagtcctgtgaaatacatccatggcctaacgacttctcaccactaataccactcatactaacagcattctcaccttagtcactaccttttttctctggattacaatagcctcccaatttatttgctcacataacctacttattctacac i ponAbe2.chrUn I 244 C 0 a score=83761.000000 s hg38.chr1_KI270765v1_alt 156792 994 + 185285 agtgcaccagatacacccctttgaaatgcaaacacaatcatattattctctggtgaaattatctcatatattcctatcgcatttaaaattaattcagaatcatcccatgattatcaaaaccctacatgctctTCCACAACATGGTTTACTTCCAAGATATCTCTTCAACATTTTTTTCACTGTACTGAATTGGTGACTAATAGTCATATTTTTGTTTTTGCTCAAAAAGTCTTGACTTGTAAATTTTTCAGTTTCTCCTTTATCCACAGGTAACTCTTTCCTGATAAGGCGAATTGCTTGCTTCCTTGAATTCTGCTCTCAAAGATACCCTTCACTTTCTACCTAATATTAATAACTTTAATCATTCATTATTCCATTACTATGCTCTATGGTGTATACAATTTCTGTTCTTTGTCATGTTATTAACTAAATTATTTATTGGGTCCAGTAACGTATTCCATAAATATTGTACACATAAAAATTGTGTTATTTTTATTCCTGTATGCTGAGCTGCCCAATAACAGTCTGAGGATTAACATATTTGTTAAATGCACAAATACATTCTTTCACAAATATTAGTTTAATAATTTTATATTAAACTCCCTCTATACTTACAATATGAATTAGATAATTCAGAATAAACATTCCATTGGAAAAAGCTACACAATTTGTTATAAAACATCCTTAAAAGCATCAGAAAATTAATACAGCAATGAAGAATTACAGGACCAAATTAAGAATGGTATGAAAGCCTGTTTGTGACGCTTATGTTTGGGTTATCTCTTTATTTGAGTGACTATAAATCTCAAAAGAGAACTAAAGGGAGAAATAACCGTATCTACTAACATGCTAAGGGTACTTAAACATCTCTTAGTAATTGAGAAAATTGaaagaaaagaaaaaagagaaagggagaaagagaaacagcgaaagggataatgaaggagagaaagaagaagagaaaggaagaggaagaaaagtaaaaaggaggagg s ponAbe2.chrUn 5668683 979 + 72422247 agtgcaccagatacacccctttgaaatgcaaacacaatcatgttattctctggtgaaattatcttatatattcctatcgcatttaaaattaattcagaataatcccatgattatcaaaaccctacatgctctTCCACAACATGGTTTACTTCCAAGATATCTCTTCAACTTTTTTTTCACTGTACTGAATTGATGACTAATAGTCATATTTTTGTTTTTGCTCAAAAAGTCTTGACTTGTAAATTTTTCAGTTTCTCCTTTATCCACAGGTAACTCTTTCCTCATAAGGCGAATTGCTTGCTTCCTTGAGTTCTGCTCTCAAAGATACCCTTCATTTTCTACCTAATATTAATAAC--TAATCATTCATTATTCCATTACTATGCTCTATAGTGTATACAATTTCTGTTCTTTGTCATGTCATTAAC-----TATTTATTTGTTCCAGTAACGTATTCCATAAATATTGTACACATAAAAATTATGTTATTTTTATTGCTGTATGCTCAGCTGCCCAATAACAGGTTGAGGATTAACATATTTGTTAAATGTACAAATACATTCTTTCACAAATGTTAGTTTAATAATTTTATATTAAACTCCCTATATACTTACAATATGAATTAGGTAATTCAGAATAAACATTCCATTGGAAAAAACTAAACAATTTGTTATAAAACATCCTTAAAAGCATCAGAAAGTTAATACAGCAATGAAGAATTACAGGACCAAATTAAGAATGGTATGGAAGCCTGTTTGTGAGGCTTATGTTTGGGTTATCTC----TTAGAGTGACTATAAATCTCAAAAGagaactaaagggagaaataaccatatctactaacatggtaagggtatttaaacatctcttagtaattgagaaaaTTgaaagaaaag----aagagaaagggagaaagaaacagaacaaaagggataatgaaggagagaaagaagaagagaaaggaagaggaagaaaagtaaagagggggagg i ponAbe2.chrUn C 0 N 0 a score=2018058.000000 s hg38.chr1_KI270765v1_alt 157801 4076 + 185285 ggcacaatcacagctcactgcagtctcgaccttccaggctcaaatgatcctcccacctcagcatcccaagtagctcacactacaggcacccaccaccacaccaagctaatttttatttttttt-gtagagatggagtctcactatattgcccaggctggtcttgaactactgtagtcaagtggtcctcccacctgagcctcccaaagtgctgggattacaagcataagccaccatacttggTGAGATATGaatttctagga---aaaaaa------tcaaaattgactcaaaaagtagaaaaaaaacttacatagattaaatatattgaatcagtaatgaaaaaacttcccataaagaaatttccaggcccaagtgccttcaccaaaaagttccatgaaacatac-aagagaaacaaaccaaccaaccaaacaacaacaacaaaaaaaactctgccaccaacaca----gagaataaaaaaagaagactcccgagttcattttacaaggttaaaataaaaataaccttgatatcaaaacccaacaaggcaagtgcaagagaaaatatttacaggccatcattattcaACGTGGATCAGCAATTATTTTTAAGATGTACTggccaggtgtggtggtcatgcctataatcctagtattttgggaggcccgagtgagaggatggcctgagctcaggagtttgagaccagcctgggcaacaaggcaaaatcacgtctttataaaaaatacaaaaattagctgggcatggcagcacacctatagacccagctattcgggaggctgaggtgggaggatcacttgagcctagcaggttgagaatgcagtgatccctgatcatgccactgtgctccagcctgggcaacagagtgagaccctgtctc---------aaaaCAACAACAGAAAGATATGCTGACCGCCTGTGATGctggccaggatggcgtatgcatgctacggcctgtcatttccactgatcacaatttgaaactctggacaaaatataaatagcaatgacccaagtactctgaaaagtaaccagcagacaggttgggaaacgtcaaaacctgaagaattatctggatggtggtgGTgagagatcatattctgggtcataaaacaaaccctaaagttaaacaattaaaattcagtgaattattttctctgatgacagaattaaactaggaatctagaacatttctagaacatccccaaatatgagaagttaaatggcatacttctaaatggcccataggtcaaagagagtatcttaagacaaattggaaaacagtttgaacttaataaatatgacatcatcttatcaaaatatgtgcttacagggcaatttatggcactaaat--tatgagaaatgaagcatcaaatcaataatgtaagcatttactttaagt---aaaaaaagaaccaaataaactcaaatcaggcat-----aagaaaaac----------agactaaatcagtaatatttaaacaaaaacagtaaaggaaaaaaattcaacgaaatccaaagttggttctttgca-agggcggtgggaggtggaagtcaatcaaatgaggaagcctctagcagactgacaaaggaagaagataaaacacaaattaccaataccagaaatgaaaggaatattattacaaatcctgtagacactagaaggctag-aatggacactacaaaaacaaaac----aaacaactatatgcttctaaattctacaaattaggtgaaatagatcaattccttgaaagacagactaccgaaactcaagaagaaacagacagcttgaatacccctgtatttattaaagaaacagaagtggcacagcactttggaagacaatttggcaggttctgataaagtcaaacgtacatggaccatgtgactcggcaatcctacccttaggcatttgcacaagtgaaatgaaaacctatgctcagacaaaaagcactttgtgaattccaatccacttataatttatcaaaaagtgaaaatagtccatattcctccaatgacaaaccaataagcaaaccatgtagtatttatacaatggattactatttggcaattaaaaggaataactgttgatgcagtatatgaaagtagccagactcaaaaggctacatcctgaacgattccatttgtataaaattctgaaaaaaaagcaatgccagaggaacacagatcagttattgccagaagtttacaatggaaggttttactataaagggtaaggtaatttttggagtgatcatataattttgtaATCTACCAAAAACAAACATaataaatgggcagataagtaaagttcatggattggaaagttcaatattgcaaagttctcccaaaaatgacctatcaatttaatcccagtggaaattccaatcagttttgtgaaggctgctaagtcaactctaaaatggccaagaatagacaagatcaccggagaggaagcagggaggtggaCACAAATATCTTCTGATTGATGAGTGAAATCATTAGAAGGCCAGCAAAAATACAAGTAAGCCAGAATTTCTAAAGCACCACAAAAGAACACTAGTTAGTAGTGCATAAAGGTATCTCCTAAATTTGTTGTAAACATAGGCCTTTAAAAAAATATTAGAAACTGATATTTAAAGAGATATAAACTCATATTAAGCTTTT-----AAAAAATTCTAAG----------CAAGGGCCTCACCTAATTTCATAAAAGGTTGCGTAGAACCAACCATTGCTGCAAACGATGTGCTGCCCTGAGATGTGAGGATCCCAGTGGTCCCTCTGGGTCAACAGCAGCTACCGCAGGTGAGCCCAAATTCTGATACATTATCTATCTACAATCATTATTTTTAACAATGTATATCAATGCTACCCATAAGGCACAGAGAAGCAGAAATGTTTATGTGGCCTCCTGCCAAAAACAATCACTTGCACTTATTTCTAG---TACTCCAGAAGACAGTAATAGAAGTTTTTCAATTTAGAAAAACATTTACAGCAAAGAAAAAAATCTCTGTAAACTTCCTGCTTATCCAATCTAGTGAATTGTGATGAGCCATATAAATTCATTTAGCCACCTTATGAAAGACTTAATCCAAAGTCACTTCTAACT--TCTAGAAGAGCTAATGTATTATAATCACAGTTGTGAAAGACTCAAAGGCCAGAAATGTCAAGGTGTGGTCTATATCCTAAGTCCA--------GAAAAAAAAACAAAAAGCAACACGTACAGGCCAAATGATTGCCAATTTCTTCTGCCTACGTCATCTTTCTTCACTATAGCCTGAAATTACATTTCATGTTTGACAATTCTCAGCAAGGAGACAAAACAAGCTTATGAGTAAAATAATAGAAAGCAGAGCCACAGAGAGGACGAGAGGCAGGAGTCATCTCCCAAGTCCAAGTTCAACTTCTATATTATTAGACAAGGCCTCAGTGTCTTTGAACTGCAAGGAATTAATATTGATTGTAGCATGAGTAAAATCTATCTTCTACTCATCATGAAAAGTCACAGTCGTTTTGTTTAAAGACTCCAGAATTATTATAGGCAGAAACAAG-CAGGTTCCACACCTATTTGGTGAAACGAGGAATCAGGAATGAGCATTCCCAAGAGAATACAATTACAAAAGTAAAATCACCTAGAGTTTTTGGGCTGCTTAAAAAACCCAGAAAGAAGTGCCAAATGGGAAAATAATCAAATTCAGTGGAAAAACTCACTTGAAGGTATCATGGTCAGCTGGGTTTCCACCCCTTTGTTGCACTTCAAATCCTGTGTATTCCACAAAGACTTGCTCCTTTCTAAAGGCTATGGTTCACATTCAACAGAATAGCAGCAACCACCATGAGCCTGAGGGCTGGCTAGTCTTTAGTATTCTGCCTTATTCAAAGAAAGGATCATTTCCCTCATTCCTAAAGATCTCCCAGGTCCATCAC-AAAAAAAAAAAGGAGCAGCAgccaggcgcaatggctcaca-cctgtaatcccagcactttgagaggccaaggggggagggtcacctgaggtcgagagttcaagaccagcctggccaacatgatgaa-----------actaaaaatacaaaaaTCagccgggtgtggtggtgtgtgcctgtaatcccagct s panTro4.chr2A 22192443 4077 - 113622374 ggcacaatcacagctcactgcagtctcgcccttccaggctcaaatgatcctcccacctcagcatcccaagtagctcacactacaggcactcaccaccacaccaagctaatttttatttttttttgtagagatggagtctcactatattgcccaggctggtcttgaactactgtagtcaagtggtcctcccacctgagcctcccaaagtgctgggattacaagcataagccaccatacttggtgagatatgaatttctagga---aaaaaa-----atcaaaattgactcaaaaagtagaaaaaaaacttacgtagattaaatatattgcatcagtaatgaaaaaacttcccataaagaaatttccaggcccgagtgccttcaccaaaaagttccatgaaacatac-aagagaaacaaaccaaccaaccaaacaa--acaa--aaaaaaactctgccaccaacacaaacagagaataaaaaaagaagactcccgaattcattttacaaggttaaaataaaaataaccttgatatcaaaacccaacaaggcaagtgcaagagaaaatatttacaggccaTCATTATTCAACGTGGATCAACAATTATTTTTAAGATGTACTggccaggtgtggtggtcatgcctataatcctagtattttgggaggcccgag--agaggatggcctgagctcaggagtttgagaccagcctgggcaacaaggcaaaatcacgtctttataaaaaatacaaaaattagctgggcatggcagcacacctatagacccagctattcgggaggctgaggtgggaggatcacttgagcctagcaggttgagaatgcagtgatccctgatcatgccactgtgctccagcctgggcaacagagtgagaccctgtctc---------aaaacaacaacagaaaGATATGCTGACCGCCTGTGATGctggtcaggatggcgtatgcatgctacggcctgtcatttccactgatcacaatttgaaactctggacaaaatataaatagcaatgacccaagtactctgaaaagtaaccagcagacaggttgggaaacgtcaaaacctgaagaattatctggatggtggtgGTgagagatcatattctgggtcataaaacaaaccctaaagttaaacaattaaaattcagtgaattattttctctgatgacagaattaaactaggaatctagaacatttctagaacatccccaaatatgagaagttaaatggcgtacttctaaatggcccataggtcaaagagagtatcttaagacaaattggaaaacagtttgaacttaataaatatgacatcatcttatcaaaatatgtgcttacagggcaatttatagcactaaat--tatgagaaatgaagcatcaaatcaataatgtaagcatttactttaagt---aaaaaaagaaccaaataaactcaaatcaggcat-----aagaaaaac----------agactaaatcagtaatatttaaacaaaaacagtaaaggaaaaaaattcaatgaaatccaaagttggttctttgca-agggtggtgggaggtggaagtcaatcaaatgaggaagcctctagcagactgacaaaggaagaagagaaaacacaaattgccaataccagaaatgaaaggaatattattacaaatcctgtagacactagaaggctag-aatggacactacaaaaacaaaac----aaacaactatatgcttctaaattctacaaattaggtgaaatagatcaattccttgaaagacagactaccgaaactcaagaagaaacagacagcttgaatacccctgtatttattaaagaaacagaagtggcacagcactttggaagacaatttggcaggttctgataaagtcaaacgtacatggaccatgtgactcggcaatcctacccttaggcatttgcacaagtgaaatgaaaacctatgctcagacaaaaagcactttgtgaattccaatccacttataatttatcaaaaagtgaaaatagtccatattcctccaatgacaaaccaataagcaaaccatgtagtatttatacaatggattactatttggcaattaaaaggaataactgttgatacagtatatgaaagtagccagactcaaaaggctacatcctgaatgattccatttgtataaaattctgaaaaaaaagcaatgctagaggaacacagatcagttattgccagaagtttacaatggaaggttttactataaagggcaaggtaatttttggagtgatcatataattttgtaATCTACCAAAAACAAACATaataaatgggcagataagtaaagttcatggattggaaagttcaatattgcaaaggtctcccaaaaatgacctatcaatttaatcccagtggaaattccaatcagttttgtgaaggctgctaagtcaactctaaaatggccaagaatagacaagaTCACCGGAGAGGAAGCAGGGAGGTGGACACAAATATCTTCTGATTGATGAGTGAAATCATTAGAAGGCCAGCAAAAATACAAGTAAGCCAGAATTTCTAAAGCACCACAAAAGAACACTAGTTAGTAGTGCATAAAGGTATCTCCTAAATTTGTTGTAAACATAGGCCTTTAAAAAAATATTAGAAACTGATATTTAAAGAGATATAAACTCATATTAAGCTTTT-----AAAAAATTCTAAG----------CAAGGGCCTCACCTAATTTCATAAAAGGTTGCGTAGAACCAACCATTGCTGCAAACGATGTGCTGCCCTGAGATGTGAGGATCCCAGTGGTCCCTCTGGGTCAATAGCAGCTACCGCAGCTGAGCCCAAACTCTGATACATTATCTATCTACAATCATTATTTTTAACAATTTATATCAATGCTACCCATAAGGCACAGAGAAGCAGAAATGTTTATGTGGCCTCCTGCCAAAAACAATCACTTGCACTTATTTCTAA---TACTCCAGAAGACAGTAATAGAAGTTTTTCAATTTAGAAAAACATTTACAGCAAAGAAGAAAATCTCTGTAAACTTCCTGCTTAACCAATCTAGTGAATTGTGATGAGCCATATAAATTCATTTAGCCACCTTATGAAAGACTTAATCCAAAGTCACTTCTAACT--TCTAGAAGAGCTAATGTATTATAATCACAGTTGTGAAAGACTCAAAGGCCAGAAATGTCAAGGTGTGGTCTATATCCTAAGTCCA--------GAAAAAAAAACAAAAAGCAACATGTACAGGCCAAATGATTGCCAATTTCTTCTGCCTACATCATCTTTCTTCACTATAGCCTGAAATTACATTTCATGTTTGACAATTCTCAGCAAGGAGACAAAACAAGCTTATGAGTAAAATAATAGAAAGCAGAGCCACAGAGAGGACAAGAGGCAGGAGTCATCTCCCAAGTCCAAGTTCAACTTCTATATTATTAGACAAGGCCTCAGTGTCTTTGAACTGCAAGGAATTAATATTGATTGTAGCATGAGTAAAACCTATCTTCTACTCATCATGAAAAGTCACAGTCGTTTTGTTTAAAGACTCCAGAATTATTATAGGCAGAAACAAG-AAGGTTCCACACCTATTTGGTGAAACGAGGAATCAGGAATGAGCATTCCCAAGAGAATACAATTACAAAAGTAAAATCACCTAGAGTTTTTGGGCTGCTTAAAAAACCCAGAAAGAAGTGCCAAATGAGAAAATAATCAAATTCAGTGGAAAAACTCACTTGAAGGTATCATGGTCAGCTGGGTTTCCACCCCTTTGTTGCACTTCAAATCCTGTGTATTCCACAAAGACTTGCTCCTTTCTAAAGGCTATGGTTCACATTCAACAGAATAGCAGCAACCACCATGAGCCTGAGGGCTGGCTAGTCTTTAGTATTCTGCCTTATTCAAAGAAAGGATCATTTCCCTCATTCCTAAAGATCTCCCAGGTCCATTACAAAAAAAAAAAAGGAGCAGCAgccaggcgcagtggctcaca-cctgtaatcccagcactttgagaggccaaggggggaggatcacctgaggtcgagagttcaagaccagcctggccaacatgatgaa-----------actaaaaatacaaaaaCCagccgggtgtggtggtgtgtgcctgtaatcccagct i panTro4.chr2A N 0 C 0 s macFas5.chr9 7946188 4071 - 133195287 ggcacaatcacagctcactgcagcctcgacctcccaggctcaaatgatcctcccacctcagcctcccaagtagctcacactacaggcacccaccaccataccaagctaa-------ttttttt-gtagagatagagtctcactatattgcccaggctggtcttgaactcctggagtcaagtggtcctaccacctcagcctcccaaagtgctgggattacaggcatgagccaccatacctggtgag--atgaatttctaggg---aaaaaaaaaacatcaaaattgactcaaaaagtagaaaaaaatcttatatacattaaatatattgaatcagtactgaaaaaacttcccataaagaaatttccaggcccaaatgccttcaccaaaaagttccatgaaacatacaaaaaaaaagaaa--------------aa--ac----aaaaaaactctgccactaacacaaa--cagaataaaaaatgaagcctccccagttcattttacaaggttaagataaaaataaccttgatatcaaaacccaacaaggcaagtgcaagaaaaaatatttacaggccatcattattcaacatggatgggaaaTTATTTTTAAGATGTATCggccaggtgcggtggtcatgcgtataatcctagcactttgggaggcccaagtgagaggatgacctgagttcaggagtttgagaccagcctgggcaacaaggcaaaaccccgtctttacaaaaaatacaaaaattagctggacatggcagcacacctatagacccagctattcgggaggctgaggtgggaggattgcttgagcctagcaggctgaggctgcagtgatccctgatcacgccactgtgctccagcctgggcaacagagtgagaccctgtctcaaaaCAACTAAAACAACAAC---AAGATGTATTGACAACCTGTGATGctggccaagatggcgtatgcatgctatggtctgttgtttctactgatcacaatttgaaactctggacaaaatataaatagcaatgacccaagtactctgaaaagtaaccagtagacaggttgagaaacgtcaaaacctgaagaattatcggtatggcggtgGTgagagatcatattctgggtcataaaacaaaccctagaattaaataattaaaattcagtgaattatgttctctgatgacagaattaaactaggaatctagaacatttctagaacatccccaaatatgagaagttaaatggcgtacttctaaatggcccacagttcaaagagagtatcttaagaaaaattggaaaacagttcgaactgaataaatatgacatcaacttatcaaaatatgtgcttagagggcaatttatagcactaaattatatgagaaatgaagtatcaaatcaataatgtaagcatctactttaagtaaaaaaaaaagaaccaaataaactcaaatcaagcat-----aagacaaactaaatatataaaactaaatcagtaatatttaaacaaaaacaataaaggaaaaaaattcaatgaaatccaaagttggttctttgcagggggtggtgggaggtaga----aatcaaatgagtaagcctctagcagaatgacaaag---gaagagaaaacacatattaccaataccagaaatcaaaggaatattattacaaaccctgtagacactagaaggctaataatggatactacagaaacaaaacacaaacacaactatatgcttctaaattctacaaattatgtgaaatagatcaattccttgaaagacaaactacgaaaactcaagaagaaacagacagcttgaatatccctacatttattaaagaaacggaagtggggcagcacttaggaagacaatttggcaggttctgataaagtcaaac--acgtggaccacgagactcggcaatcctactcctaggtgtttgcacaagtgaaatgaaaatctatgctcagacaaaaagcactttgtgaattccaatccacttataacttaccaaaaagtgaaaatagtctgtgttcccccaaagacaaaccaataagcaaaccatgtagtatttatacaatggattactatttggcgataaaaaggaataactgttgataccgtacacgaaagtagccagactcaaaaggctacatcctgaacgattccatttatataaaattctg-aaaaaaagcaatgctagaggaacacagatcagtgattgccagaagtttacaatggaaggttttactataaagggcaaggtaatttttggagtgatcatataattttgtCATCTACCAA----AAACATaatatatgggcagataagtaaagttcacagatgggaaagttcaatattgtaaaggtctcccagaaaagacctatcaatttaatcccaatggaaactc----cagttttgtgaaggccgctaagtcaactctaaaatggccaagaatagacaagatcaagggagaggaagcacggaggtggaCACAAATATTTTCTGATTGATGAGTGAAATCATTAGAAGTCCAGCAAAAATACAAGTGGGCCAGAATTTCTAAAGCACCACAAAAGAACAC----TAGTAGTGCATATAAGTATCTCCCAAATTTGTTGTAAACATAGGCCTTT-AAAAAATATTAGAAACTGATATTTAAAGAGAGAGAAACTCATATGAAACCTTTTAAAAAACAAATTCTAAT----------CAAGGGCCTCACCTAATTTCATAAAAGGTTGTGTAGAATCAACCATTGCAGCAAACGATGCGCTGCCCTGGGATGTGAGGATCCCAGTGGTCTCTCTGGGTCAACAGCAGCTACAGCGGCTGAGCCCAAACTGTGATACATTATCTATCTATGATCATTGT--------ATTTATATCAATGCTACCCATAAATCACAGAGAAGCAGAAATGTTTATGTGGCCTCTTGCCAAAAACAATCACTTGCACTTGTTTCTAGGACTACTCCAGAAGACAGTATTAGAAGTTTTTCAATTTAGAAAAACATTTTCAGCAAAGAAAAAAATCTCTGTAAATTTCCTGCTTAACCAATCTAGTGAATTGTGATGAACTATATAAATTCATTTAGCCACCTTATGAAAGACTAAGTCCAAAGTCACATCTAACTTCTCTAGAAGAGCTAATGTATTATAATCACAGTTGGGAAAGACTCAAAGGCCAGAAATGTCAAGGTTTGGTCTATATCCTAAGTCCAGGGaaagaaaaaaaaaaaaaaaaaGCAACATGTACAGGCCAAATGATTGCCAATTTCTTCTGCCTGTGTCATCTTTCTTCACTATAGCCTGAAATTACATTTCATGTTTGACAATTCTCAGCAAGGAGACAAAACAAGCTTATGAGTAAATTAACAGAAAGCAGAGCCACAGAGAGCACGAGAGGCAGGGGTTATCTCCCAAGTCCAAGTTCGACCTCTG---TATTAGACAGGGCCTCAGTGTCCTTGAACCGCAAGGAATTAATATTGATTGTAGCATTAGGAAAACCTATCTTCCACTCATCATGAAAAGTCACAGTCGTTTTATTTAAAGACTCCAGAATTATTATAGGCAGAAACAAATAAGGTTACCCACCTGTTTGGTGAAACCAGGAATCAGGAATGAGTATGCCCAAGACAATTAA--TCCAAAAGTAAAATCACCTAGAGATTTGCAGCTGCTTAAAAAGCCCAGAAAGCAGCGCCAAATGAGAAAATAAACAAATTCGGTGGAAAAACTCACTTGAAGGTATCACGGTCAGCTGGGGTTCCACCCGTGTGATGCACTTCAAATCCTGTGTATCCCACAAAGACTTGCTCCTTTCTAAAGGTTATGGTTCACGGTCAACAGAATAGCAGCAACCACCACGAGCCTGAGGGCTGGCTAGTCTTTAGTTTTCTACCCCATTCAAAGAAATGATCCTTTCCCTCATTCCTAAAGATCTCCCGGGTCCATTAG-----AAAAAAAGG---AGCAgccagatacagtggctcatagcctgtaatcccagcactttgagaggccaaggtgggaggatcacctgaggtctagagttcaagaccagcctggccaacatggtgaaatcccatctctactaaaaatacaaaaatcagccgggtgtggtggtgtgtgcctgtagtcccagct i macFas5.chr9 N 0 N 0 s papAnu2.chr9 7745257 4086 - 125196307 ggcacaatcacagctcactgcagcctcgacctcccaggctcaaatgatcctcccacctcagcctcccaagtagctcacactacaggtacccaccaccataccaagctaa-------ttttttt-gtagagatagagtctcactatattgcccaggctggtcttgaactcctggagtcaagtggtcctaccacctcagcctcccaaagtgctgggattacaggcgtgagccaccatacctggtgaG--ATGaatttctagggaaaaaaaaaaaaacatcaaaattgactcaaaaagtagaaaaaaatcttatatacattaaatatattgaaTCAGTACTGAAAAAACTTCCCATAAAGAAATTTCCAGGCCCAAATGCCTTCACCAAAAAGTTCcatgaaacatac-aaaaaaaagaaa--------------aa--ac----aaaaaaactctgccACTAacacaaa--cagaataaaaaatgaagccTCCCCAGTTCATTTTACAAGGTTAAGATAAAAATAACTTTGATATCAAAACCCAATAAGGCAAgtgcaagaaaaaatatttacaggcCATCATTATTCAACATggatgagaaattatttttaagatgtatcggccaggtgcggtggtcatgcgtataatcctagcactttgggaggcccaagtgagAGGAtgacctgagttcaggagtttgagaccagcctgggcaacaaggcaaaaccccgtctttacaaaaaatacaaaaattagctggacatggcagcacacctatagacccagctattcgggaggctgaggtgggaggatcgcttgagcctagcaggctgaggctgcagtgatccctgatcacgccactgtgctccagcctgggcaacagagtgagaccctgtctc---------aaaacaacaac---aagatgTATTGACAACCTGTGATGCTGGCCAAGATGGCGTATGCATGCTATGGTCTGTTGTTTCTACTGATCACAATTTGAAACTCTGGACAAAATATAAATAGCAATGACCCAAGTACTCTGAAAAGTAACCAGTAGACAGGTTGAGAAACGTCAAAACCTGAAGAATTATCGGTATGGCGGTGGT--GAGATCAtattctgggtcataaaacaaaccctagaattaaacaattaaaattcagTGAATTATGTTCTCTGATGACAGAATTAAACTAGGAATCTAGAACATTTCTAGAACATCCCCAAATATGAGAAGTTAAATGGCGTACTTCTAAATGGCCCACAGTTCAAAGAGAGTATCttaagaaaaattggaaaacagtTCGAACTGAATAAATATGACATCAACTTATCAAAATATGTGCTTAGAGGgcaatttatagcactaaattatATGAGAAATGAAGTATCAAATCAATAATGTAAGCATctactttaagt--aaaaaaaagaaccaaataaactcaaatcaagcataagaaaagacaaactaaatatataaaactaaatcagtaatatttaaacaaaaacaataaaggaaaaaaattcaatgaaatccAAAGTTGGTTCTTTGCAGGGGGTGGTGGGAGGTAGAAATCAATCAAATGAGTAAGCCTCTAGCAGAAtgacaaag---gaagagaaaacacataTTACCAATACCAGAAATCAAAGGAATATTATTACAAACCCTGTAGACACTAGAAGGCTAATAATGGATACtacagaaacaaaacacaaacacaacTATATGCTTCTAAATTCTACAAATTACGTGAAATAgatcaattccttgaaagacaaactaccaaaactcaagaagaaacagacagCTTGAATATCCCtacatttattaaagaaactgaagtgGGGCAGCACTTAGGAAGACAATTTGGCAGGTTCTGACAAAGTCAAAC--ACGCGGACCACGAGACTCGGCAAtcctactcctaggtatttgcACAAGTGAAATGAAAATCTATGCTCAGACAAAAAGCACTTTGTGAATTCCAATCCACTTATAACTTACCAAAAAGTGAAAATAGTCTGTGTTCCCCCAAAGACAAACCAATAAGCAAACCATGTAGTATTTATACAATGGATtactatttggcaataaaaaggagtaACTGTTGATACCGTACACGAAAGTagccagactcaaaaggctaCATCCTGaacgattccatttatataaaattctg-aaaaaaagcaATGCTAGAGGAACacagatcagtgattgccagaaGTTTACAATGGAAGGTTTTACTATAAAGGGCAAGGTAATTTTTGGAGTGATCATACAATTTTGTcatctaccaaaaacaaacataatATATGGGCAGATAAGAAAAGTTCACAGACGGGAAAGTTCAATATTGTAAAGGTCTCCCAGAAAAGACCTATCAATTTAATCCCAATGGAAACTC----CAGTTTTGTGAAGGCCGCTAAGTCAACTCTAAAATGGCCAAGAATAGACAAGATCAAGGGAGAGGAAGCACGAAGGTGgacacaaatattttctgattgaTGAGTAAAATCATTAGAAGTCCAGCAAAAATACAAGTGGGCCAGAATTTCTAAAGCACCACAAAAGAACACTAGTTAGTAGTGCATATAAGTATCTCCCAAATTTGTTGTAAACATaggccttt-aaaaaatattagaaactgatatttaaagagaaggaaactcatatgaaaccttttaaaaaacaaattctaatCAAGGGCCTCCAAGGGCCTCACCTAATTTCATAAAAGGTTGTGTAGAATCAACCATTGCAGCAAACGATGCGCTGCCCTGGGATGTGAGGATCCCAGTGGTCTCTCTGGGTCAACAGCAGCTACAGCGGCTGAGCCCAAACTGTGATACATTATCTATCTATGATCATTGT--------ATTTATATCAATGCTACCCATAAATCACAGAGAAGCAGAAATGTTTATGTGGCCTCTTGCCAAAAACAATCACTTGCACTTGTTTCTAGGACTACTCCAGAAGACAGTATTAGAAGTTTTtcaatttagaaaaacattttcagcaaagaaaaaaatctctgtaaATTTCCTGCTTAACCAATCTAGTGAATTGTGATGAACTATATAAATTCATTTAGCCACCTTATGAAAGACTAAGTCCAAAGTCACATCTAACTTCTCTAGAAGAGCTAATGTATTATAATCACAGTTGGGAAAGACTCAAAGGCCAGAAATGTCAAGGTTTGGTCTATATCCTAAGtccagggaaag-aaaaaaaaaaaaaaaagcaacatgtaCAGGCCAAATGATTGCCAATTTCTTCTGCCTGTGTCATCTTTCTTCACTATAGCCTGAAATTACATTTCATGTTTGACAATTCTCAGCAAGGAGACAAAACAAGCTTATGAGTAAATTAACAGAAAGCAGAGCCACAGAGAGCATGAGAGGCAGGGGTTATCTCCCAAGTCCAAGTTCGACCTCTG---TATTAGACAGGGCCTCAGTGTCCTTGAACCACAAGGAATTAATATTGATTGTAGCATTAGGAAAACCTATCTTCCACTCATCATGAAAAGTCACAGTCGTTTTATTTAAAGACTCCAGAATTATTATAGGCAGAAACAAATAAGGTTACCCACCTGTTTGGTGAAACCAGGAATCAGGAATGAGTATGCCCAAGACAATTAA--TCCAAAAGTAAAATCACCTAGAGATTTGCAGCTGCTTAAAAAGCCCAGAAAGCAGCGccaaatgagaaaataatcaaattcgGTGGAAAAACTCACTTGAAGGTATCACGGTCAGCTGGGGTTCCACCCGTGTGATGCACTTCAAATCCTGTGTATCCCACAAAGACTTGCTCCTTTCTAAAGGTTATGGTTCACGGTCAACAGAATAGCAGCAACCACCACGAGCCTGAGGGCTGGCTAGTCTTTAGTTTTCTACCCCATTCAAAGAAATGATCCTTTCCCTCATTCCTAAAGATCTCCCGGGTCCATTAG-----aaaaaaaGG---AGcagccagatacagtggctcatagcctgtaatcccagcactttgagaggccaaggtgggaggatcacctgaggtctagagttcaagaccagcctggccaacatggtgaaatcccatctctactaaaaatacaaaaatcagctgggtgtggtggtgtgtgcctgtaatcccagct i papAnu2.chr9 N 0 N 0 a score=6905787.000000 s hg38.chr1_KI270765v1_alt 161877 5714 + 185285 actttggagctgggtaactggcagaggtt-gaacaatttgcaggtctcagaagacaggaaaatgtgggaaagtttgaaattccaagagacttgttgaatggctttgaccaaaatgctgataatgatatggacaatgaaatccatgctgaggcagtctctgatggagatgaggaacttgctgggaactggagcaaaggtgactcttgtcacctttGATAAGATGGTGGTTGAGGAGAGGTCTTGGCAAGCA------GTGATGTGTGAATGTAGTGAGGGGCCTGAA---------------------AATGGAACTCAgagaggacactgggttttagaggctgaaactacagaaagtccgctgcgttcaaggcctgcttccaccaaaatctagcagtgtggcct----caaaccatttcatttctcttggcctcagtttctacatctgcaaaatgggatttataatcccaccccagcccacagaattcagagttatatgagaaggctagaagagctcacctaccaagggactcttttaatggc--aaggtggggaaactgaggcaccgagagggctagggctctgctagctgtcacccagagtc--tgatggacctgagatgagaaaccagaactcctgcccctagttcCCCCGGCTTTCCTCAGGCTGGGGAGTGAGTGCGGTGAGATAGAAAGGGCAAGCCCTCCTGCTGTTTCTCTCTGGACAGGGGCGGGATGCTGGGTGAAGGGTGAAAGGAAGAGGCTGGAGAAGGGAGAAAAGCTCCAGCTCACACTAAGTCTGAATTTTTTTAAAATGCGGACTCCGTGGCCCCTCCCTTACCCGCCCCAATCCTCTCTGAAGTCCTGGTTGTGAGGGGCCAAGTCC----CAAAGTCTGCTGCTCCGCCTCTCTGTGTGCAGAGCCATGGGGCCTTCACAGGCTGCAGTGGGTCCCGAGCCCCCAGGGCTGTGCCTGCTGGTCCTGACCAAGATCGCGGCTGCCGAGGTCAGTccagcgccaagggcacagggccagggcaggcggggcagggcTACCCGAAGCGCATAGAGGCTGCTGGTGTCAACGTGACGTCTTCTGGGGCGCCTGGCATCCCTAGGAGTGGAAGCCGCTGATGAAGTCAAAGCTGCCTCCTCCTTCAGGAAGACTTTGCTCCCATAGCTGGCGAACAGGAAGCGGAGCAGCACCAGGAGGATCTGCGGGCGCTGCTGAGGGCTTCTTTGCAGGGACAGTGCAGCAGGCAGCCAGGGAC-AAGACTGCACGGCAGCGCCCCATGGCCAGGGGAAGCTCAGAACCGGAGTCGCCCGCTGCCCGGCG-ATTCTCCATCCCTGGATCGGTACAGGGGCATTTGGACGCTGTGGGGAAGTCGCGGTCTGGGGATATTGGGTCCAGCCTTCGGGTAGAAGCAGGTGATAAACGCACTCAGGCCAGCCCGGAGCGTCAGCCACACTGCGGTGCCCACGATGCCCAGGGTGAGCACCACGAGGCGCAGGAAATTGGCTAGGGTGGGAGCTCACTGGTAGGC-GCCCTGGAAGTCAAAGATCTGCTGCTCCAGCGCTGCCACCAGTTGCAGGCAGCAGAAGGCGAGGAGCGTGTGGCACCCGCGTACTCGCCCATCGCTCCGCGGACCTCTTTATCCAACCTTCAATAATTATTCTTTTTATTATATTCAATGATTATTCTACTTTTCATAGAGAGCAGCTGTCAGTCCAATAACACACTTAACAAATGATATACCTAGTCCTCAAGGTTAACAAACACATGAAGACCAGCCCAACCCTGAAAATCAGTTTGCAAACCTTCGCTATATCTGATGCCATTCCTAAAAATTTTTAGGGACAAGTTTTGTTTGTGGTAAACAACATAAGGTGGGGTGTGTGCTGAGCCCAAAGCtgaccaattgctcacaattactcataactacccattgacttgattttatcaaacttcagacagtcttgtctcctctcctcaggcccctggaccttggctcaccacctaagactgaacaagcactaaaggacagaccagcccgctaacagctcactccaaaaatgagcgggactcccagagaaactatttttattggagcatcctggttttgccacctgctcaccccactgcctgttcttctctccaaggaggcttctgccagccctgcttgtccttccctagaaaaggaaagccttttcctgtttgatcctgagacacctgtagattgagt-----------ttggaatattctccctattgcaatagtatttttgaataagttttatttttccctacctctggttgatttttaattaataCCAGTAAGCTTGGATGAAAGCCTGCACACCTTAG------------------------------gtgtgtgtgtgtgtgtgtatgtatgtACTTTAGCATTATCAT-AAAGTAATAACAGTAAAATCAAACAAACACAGATGGATAAGCAATATGTTGGACTAG---------TATGAAAATGGCATTGCCAGCAGTGATATGATTTTTTTTTCAAAATGGTACACTTTTTGAAGTATAATCTTATTTTAACCTAAAATCTTACTGTCAgaaaatgcagtgtacattaaaatgttctgaactgcttttatt--catatattaaatggttgta----ctcaaatatctacaaatttgtttttcacttatgtaattgtcttatagaatgttcaaaagtcttgcagaatgtgagacaattttctattgaatacgatcgctttatcattgcaagacatcaaacatccctgtttcctgccaaataaatgtacaatagcaATAAATGTAAAGATGTGTTTTGTAAAAAAGATATATTTTTGAGTTACAAAACAAGGATTTTAAAACTTGAATTGTTACAGTGAATATGTCTTAATACAGGCCAGAGTCA-TTTAGGTAAAAAATTACCTCATATCTATTCTTTGCAGTATCACTTAAAGGTGTTTATTTAGCGGCAAAGATTTTTTTTTTTGTGCCTAGAGGCAGATATTTTGCCCCATGGCTATTTACGGTATGAAACTGTATTTAAATGAGTGTACATATATAAAAGCTGCCATTCTGGC--TGTAAACTATTGCAGGTTATCAAG-ATTAAAAAATAAACAAATAAAAATATTTCAGTTTTTCTATGAAATGTCTTTACTCGAGTCCAAATGTAGAGATATAAAATGCTTGAAATTCATAAAACCAAGTGTTTCACATATTTCAGTTGTGATGGCCTTTGTCCTACTTTTGTTAGTGAAGCAGGCAGACTGCA-TTTTTTCCCTCTCATACATCTTCAAATGGTAGACAGAAAAATTTGATAAAACTTCTAGGGCATTATCTGATGAAACACATTAAACACTAAAGGAGAAATACAACTTCATTGTTTATAAAAGACGTATAAGAAGGAAACCTGCATACATATATCTATCAGTTTTGTATTTTCAAGAAATATTTGCCTTAAAATGAACTTCATTAGAATATGTGTTCTCCCACAGAGCCAAGGAAAGTAAGTTAGACAC-AGGATCTGGAAGTCTACCTGTGTGATGTAATTACATTGAAAACATTCCACAAATAATGCAGAAATGTATCATTGTGACCCAAAATATTCTCTAAATTTTCTCAAAGCAATGTGGCCACATCTATTATCTTTTACTATGACTAGTCATCATTCCATGCATTTGAACATTACCTCACCCATTTGCAGCCTCCTATCTCTGCAATTAATTATGGCTAACATTCTCAGCAGTCCAAACATCTTGCAAGTGACAGCTTGAAAAGGCCTACCAGAATGATGTTCACTCTGCCACCTGACTAGCTTGTCTTCCATCTAGACATTGCAGTATGTAGAAGAGTGCTTTTAGTATTATAAATTTGATCCAACACGTGTTCAATTAGATGAAATCTTAAATATTGCACTACATGTGAATTGGGAAAATGTTAATTTGCTTCTGTAGTTTTAAGTGTATTCTCAGAGGCAGATGAAGACATATTACATCACTGAGTTCAAGAAATAAAGTAAATAGAAGAAAAAAGGTGTTATTTTAGTTTGGTTATGTTTATATTTGAAGTTTTCT---------------------------------------------------------------TATCATACCTTATTTTTTGTTTATTAATTCCAGGGTAGAGTAGAAAAATATGCTCTC--ATATAATATAAAAATGATATGGGGAAAAGAAGTAAAAAATTAACTTAGAGACACCATTAATTAATTTCTTTTATAAATGAAACACTAGATAGTTTCTATTTGTTTTGACAAATAGATAATATATTTAGAATCAATGCTTTATTTCTTGGAAAGTGGAGTGAAAAATTTAAATGTAGTATTCAGATTGTATTATAACTGTGCACTACAGATCACATACATTTGTCTTTTCTTTGTATTATACATTATTTAATGGTAAGCATCCTTTCAAGGGCTATTTTATATAAGTAGTAAGGTATCTGGAATTTCTGAAATAATAAAAGTGACCTAAATCACTGTGTTTGGTAAATTCACAATACCCAAATAGCAGGAGGGGAGTGCTAGAGGTAGGGAGGAGAATGCTCATGTTCTCATTATTCCCAAACAGATTCTT-AAAGTCTTCTCACTGGACACATGGATGCACCTCTGTAATACCCAATATCT----TAGCCACAACTGTCCGCACTTTTTAATGAGATACATTTCAAC---ATTATTCCTTGTCACCTCAATATCAGATACTTTCTCATGTAATCTTTTACTTCTGAGGAGTTGAATTCTTGATCCATAAACTGAATCCATAGCTATGCATCTGTGGATGTTTTTAAATTATGTGAAAATTTTGTA-TATGCATTTTTCAGGGGAAAGTATCAGATCACCCACCTGGTGATTGTAACAAAAACAATCACTCCTGTTGGTATTTAAGTCTTAATTAATTCAGAAAAATTTGCACACACCCTAAGGTCAGATAGTATTTTGTACCCTACATATAAAAACTCC----------ttttttttttttttgagatggagtctcactctgttgcccaggttggagtgcactggcatgatctctgctcactgcaaactctgcctcccAtaacattaatgatcactgatcacagatcaccgtaacgaatataataataaggaaatattttaaaaattgtgaagattaccaaagtgtgaaaccaagacacaaagtgagcacaggctgtttgttaaatggcaccaatagacttgcttcaccagggttgtcacaaacatctcatttgtaaataa-agaaaaaatgttcctatctgtgaagcacaataaagagaagtgcaataaaaTATG-----TTTGTATTAATTTGGTTAACTTTATTCCAACTTAATGTAAATTAGTTTTAAAACAGTTTATAAAATTCTTAAATGAACCTGGCAAATTTAGAGCAATAATAAAATTATTTAAATTAGAAAAGTCTTTTTTAAAAAGGATAAATAACAAATGTCTCATTGGAATTATTAAAGTTgtttcaagttcagctctgaggttcttagaaactaaagtaaaaaagtatgaccagttTCTGAAGTCAAGATAAAATCATACAATCTTTAACTTAGAAAATTATCTTCTGTGTTGTGTCCTAAGCAT-AAACAAATGTAAGGACTTGCCCTGACACTCTGTAAGTAGTTCCACTCCAATACGCCCTGCAGAAATATTTCCTGGCAAGAACAGCAAGTCAGAAGCCTTTTCAGCATGGCAAGGAGGGAGAGAGACTATGCTATT-AAAAAAAAAAAAAAAAGATGAGGAGGAACAATAGCACCTTAGACAAGTGAGAAGTTTCAAAAGAGAC--ATATAAGGAGAGCAGT s panTro4.chr2A 22196520 5788 - 113622374 actttggagctgggtaactggcagaggtt-gaacaatttgcaggtctcagaagacaggaaaatgtgggaaagtttgaaattccaagagacttgttgaatggctttgaccaaaatgctgataatgatatggacaatgaaatccatgctgaggcagtctctgatggagatgaggaacttgctgggaactggagcaaaggtgactcttgtcacctttGATAAGATGGTGGTTGAGGAGAGGTCTTGGCAAGCA------GTGATGTGTGAATGTAGTGAGGGGCCTGAA---------------------AATGGAACTCAgagaggacactgggttttagaggctgaaactacagaaagtccgctgcgttcaaggcctgcttccaccaaaatctagcagtgtggcct----caaaccatttcacttctcttggcctcagtttctacatctgcaaaatgggatttataatcccaccccagcccacagaattcagagttatatgagaaggctagaagagctcacctaccaagggactcttttaatggc--aaggtggggaaactgaggcaccgagagggctagggctctgctagctgtcacccagagtc--tgatggacctgcgatgagaaaccagaactcctgcccctagttcCCCCGGCTTTCCTCAGGCTGGGGAGTGAGTGCGGTGAGATAGAAAGGGCAAGCCCTCCTGCTGTTTCTCTCTGGACAGGGGCGGGATGCTGGGTGAAGGGTGAAAGGAAGAGGCTGGAGAAGGGAGAAAAGCTCCAGCTCACACTAAGTCTGAAATTTTTTAAAATGCGGACTCCGTGGCCCCTCCCTTACCCGCCCCAATCCTCTCTGAAGTCCTGGTTGTGAGGGGCCAAGTCC----CAAAGTCTGCTGCTCCGCCTCTCTGTGTGCAGAGCCATGGGGCCTTCACAGGCTGCAGTGGGTCCCGAGCCCCCAGGGCTGTGCCTGCTGGTCCTGACCAAGATCGCGGCTGCCGAGGTCAGTCCAGCGCCAAGGGCACAGGACCAGGGCAGGCGGGGCAGGGCTACCCGAAGCGCATAGAGGCTGCTGGTGTCAACGTGACGTCTTCTGGGGCGCCTGGCATCCCTAGGAGTGGAAGCCGCTGATGAAGTCAAAGCTGCCTCCTCCTTCAGGAAGACTTTGCTCCCATAGCTGGCGAACAGGAAGCCGAGCAGCGCCAGGAGGATCTGCGGGCGCTGCTGAGGGCTTCTTTGCAGGGACAGTGCAGCAGGCAGCCAGGGAC-AAGACTGCACGGCAGCCCCCCATGGCCAGGGGAAGCTCAGAACCGGAGTCGCCCGCTGCCCGGCG-ATTCTCCATCCCTGGATCGGTACAGGGGCATTTGGACGCTGTGGGGAAGTCGCGGTCTAGGGATATTGGGTCCAGCCTTCGGGTAGAAGCAGGTGATAAACGCACTCAGGCCAGCCCGGAGCGTCAGCCACACTGCGGTGCCCACGATGCCCAGGGTGAGCGCCACGAGGCGCAGGAAATTGGCTAGGGTGGGAGCTCACTGGTAGGCGGCCCTGGAAGTCAAAGATCTGCTGCTCCAGCGCTGCCACCAGTTGCAGGCAGCAGAAGGCGAGGAGCGTGTGGCACCCGCGTACTCGCCCATCGCTCCGCGGACCTCTTTATCCAACCTTCAATGATTATTCTTTTTATTATATTCAATGATTATTCTACTTTTCATAGAGAGCAGCTGTCAGTCCAATAACACACTTAACAAATGATATACCTAGTCCTCAAGGTTAACAAACACATGAAGACCAGCCCAACCCTGAAAATCAGTTTGCAAACCTTCGCTATATCTGATGCCATTCCTAAAAATTTTTAGGGACAAGTTTTGTTTGTGGTAAGCAACATAAGGTGGGGTGTGTGCTGAGTCCAAAGCtgaccaattgctcacaattactcataactacccattgacttgattttatcaaacttcagacagtcttgtctcctctcctcaggcccctggaccttggctcaccacctaagactgaacaagcactaaaggacagaccagcccgctaacagctcactccaaaaatgagcgggactcccagagaaactatttttattggagcatcctggttttgccacctgctcaccccactgcctgtccttctctccaaggaggcttctgccagccctgcttgtccttccctagaaaaggaaagccttttcctgtttgatcctgagacacctgtagattgagt-----------ttggaatattctccctattgcaatagtatttttgaataagttttatttttccctacctctggttgatttttaattaataCCAGTAAGCTTAGATGAAAGCCTGCACACCTTAGGG------------------gtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtatgtACTTTAGCATTACCATGAAAGTAATAACAGTAAAATCAAACAAACACAGATGGATAAGCAATATGTTGGACTAG---------TATGAAAATGGCATTGCCAGCAGTGATATGA-TTTTTTTTCAAAATGGTACACTTTTTGAAGTATAATCTTATTTTAACCTAAAATCTTACTATCAgaaaatgcagtgtacattaaaatgttctgaactgcttttatt--catatattaaatggttgta----ctcaaatatctacaaatttgtttttcacttatgtaattgtcttatagaatgttcaaaagtcttgcagaatgtgagacaattttctattgaatacgattgctttatcattgcaagacatcaaacatccctgtttcctgccaaataaatgtacaatagcaATAAATGTAAAGATGTGTTTTGTAAAAAAGATATATTTTTGAGTTAAAAAACAAGGATTTTAAAACTTGAATTGTTACAGTGAATATGTCTTAATACAGGCCAGAGTCA-TTTAGGTAAAAAATTACCTCATATCTACTCTTTGCAGTATCACTTAAAGGTGTTTATTTAGCAGCAAAGA-TTTTTTTTTTGTGCCTAGAGGCAGATATTTTGCCCCATGGCTATTTACGGTATGAAACTGTATTTAAATGAGTGTACATATATAAAAGCTGCCATTCTGGC--TGTAAACTATTGCAGGTTATCAAG-attaaaaaataaacaaataaaaatatttCAGTTTTTCTATGAAATGTCTTTACTCGAGTCCAAATGTAGAGATATAAAATGCTTGAAATTCATAAAACCAAGTGTTTCACATATTTCAGTTGTGATGGCCTTTGTCCTACTTTTGTTAGTGAAGCAGGCAGACTGCA-TTTTTTCCCTCTCATACACCTTCAAATGGTAGACAGAAAAATTTGATAAAACTTCTAGGGCATTATCTGATGAAACACATTAAACACTAAAGGAGAAATACAACTTCATTGTTTATAAAAGATGTATAAGAAGGAAACCTGCATACATATATCTATCAGTTTTGTATTTTCAAGAAATATTTGCCTTAAAATGAACTTCATTAGAATATGTGTTCTCCCACAGAGCCAAGGAAAGTAAGTTAGACAC-AGGATCTGGAAGTCTACCTGTGTGATGTAATTACATTGAAAACATTCCACAAATAATGCAGAAATGTATCATTGTGACCCAAAATATTCTCTAAATTTTCTCAGAGCAATGTGGCCACATCTATTATCTTTTACTATGACTAGTCATCATTCCATGCATTTGAACATTACCTCACCCATTTGCAGCCTCCTATCTCTGCAATTAATTATGGCTAACATTCTCAGCAGTCCAAACATCTTGCAAGTGACAGCTTGAAAAGGCCTACCAGAATGATGTTCACTCTGCCACCTGACTAGCTTGTCTTCCATCTAGACATTGCAGTATGTAGAAGAGTGCTTTTAGTATTATAAATTTGATCCAACACGTGTTCAATTAGATGAAATCTTAAATATTGCACTACATGTGAATTGGGAAAATGTTAATTTGCTTCTGTAGTTTTAAGTGTATTCTCAGAGGCAGATGAAGACATATTACATCACTGAGTTCAAGAAATAAAGTAAATAGAAGGAAAAAGGTGTTATTTTAGTTTGGTTATGTTTATATTTGAAGTTTTCTTTTCCAGATTTAGGAGAACCTACTAAATAC--ACTGAAAAAAATGTGGTAGCCCTAGGTTAAATATCATACCTTATTTTTTGTTTATTAATTCCAGGGTAGAGTAGAAAAATATGCTCTCTTATATAATATAAAAATGATATGGGGAAAAGAAGTAAAAAATTAACTTAGAGGCACCATTAATTAATTTCTTTTATAAATGAAACACTAGATAGTTTCTATTTGTTTTGACAAATAGAGAATATATTTAGAATCAATGCTTTATTTCTTGGAAAGTGGAGTGAAAAATTTAAATGTAGTATTCAGATTGTATTATAACTATGCACTACAGATCACATACATTTGTCTTTTCTTTGTATTAGACATTATTTAATGGTAAGCATCCTTTCAAGGGCTATTTTATATAAGTAGTAAGGTATCTGGAATTTCTGAAATAATAAAAGTGACCTAAATGACTGTGTTTGGTAAATTCACAATACCCAAATAGCAGGAGGGGAGTGCTAGAGGTAGGGAGGAGAATGCTCATGTTCTCGTTATTCCCAAACAGATTCTT-AAAGTCTTCTCACTGGACACATGGATGCACCTCTGTAATACCCAATGTCT----TAGCCACAACTGTCTGCACTTTTTAATGAGATACATTTCAAC---ATTATTCCTTGTCACCTCAATATCAGATACTTTCTCATGTAATCTTTTACTTCTGAGGAGTTGAATTCTTGATCCATAAACTGAATCCATAGCTATGCATCTGTGGATGTTTTTAAATTATGTGAAAATTTTGTA-TATGCATTTTTCAGGGGAAAGTATCAGATCACCCACCTGGTGATTGTAACAAAAACAATCACTCCTGTTGATATTTAAGTCTTAATTAAGTCAGAAAAATTTGCACACACCCTAAGGTCAGATAGTATTTTGTACCCTACATATAAAAACTCC---------tttttttttttttttgagacggagtctcactctgttgcccaggttggagtgcactggcatgatctctgctcactgcaaactccgcct--cAtaacattaatgatcactgatcacagatcaccgtaacgaatataaaaataaggaaatattttaaaaactgtgaagattaccaaagtgtgaaaccaagacacaaagtgagcacaggctgtttgttaaatggcaccaatagacttgcttcaccagggttgtcacaaacatctcatttgtaaataa-agaaaaaatgttcctatctgtgaagcacaataaagagaagtgcaataaaaTATG-----TTTGTATTAATTTGGTTAACTTTATTCCAACTTAATGTAAATTAGTTTTAAAACAGTTTATAAAATTCTAAAATTAACCTGGCAAATTTAGAGCaataataaaattatttaaattaGAAAAGTCTTTTTTAAAAAGGATAAATAACAAATGTCTCATTGGAATTATTAAAGTTGTTTCAAGTTCAGCTCTGAGGTTCTTAGAAACTAAAGTAACAAAGTATGACCAGTTTCTGAAGTCAAGATAAAATCATACAATCTTTAACTTAGAAAATTATCTTCTGTGTTGTGTCCTAAGCAT-AAACAAATGTAAGGACTTGCCTTGGCACTCTGTAAGTAGTTCCACTCCAATACACCCTGCAGAAATGTTTCCTGGCAAGAACAGCAAGTCAGAAGCCTTTTCAGCATGGCAAGGAGGGAGAGAGACTATGCtattaaaaaaaaaaaaaaaaaGATGAGGAGGAACAGTAGCACCTTAGACAAGTGAGAAG-TTCAAAAGAGAC--GTATAAGGAGAGCAGT i panTro4.chr2A C 0 I 300 s nomLeu3.chr7b 60506620 5769 - 115148730 actttggagctgagtaactggcagaggttggaacaatttgcagggctcagaagacaggaaaatgtgggaaagtttgaaattct--gagacttgttgaatggctttgaccaaaatgctgataagtatacagacaacgaaatccatgctgaggcagtctccgatggagatgaggaacttgctgggaactggaggaaaggtgactcttgtcacctttGACAAGATGGTGGTTGAG--GAGTCCTTGGCAAGCC------GTGATGTATGCATGTAGTGAGGGGCCTGAA---------------------AACGGAACTCAGAGCAGACACTGGGTTTTAGGGCCTGAAACTAcagaaagtccgctgcgtacaaggcctgcttccaccaaaatctagcagtgtggcctcaagcaaaccatttcacttatcttggcctcagtttctatatctgcaaaatgggatttataatcccactccagcccacagaattcagagtcgtatgagaaggctagaagagctcacctaccaagggactcttttaatgac--aaggtggggaaactgaggccgcaagagggctagggctctgctagctgtcacccagagtcagtgatggacctgcgatgagaaaccgggactcctgcccctagttccccgggctttcctcagGCTGGGGAGTGAGTGCGGTGAGATGGAAAGGGCACGCCCTCCTGCTGTTTCTCTCTGGACAGGGGCAGGATGCTGGGTGAAGGGCGAAAGGAAGAGGCTGGAGAAAGGAGAAAAGCTCCAGCTCACACTAAGGCTGAGATTCTGTAAAATGCGGACTCTGCGGCCCCTCCCATACCCGCCCTATTCCTCTCTGAAGTCCTGGTTGTGAAGGGCCAAGTCC----CAAAGTCTGCTGCTCCGCCTCTCTTTGTGCAGACCCAAGGGGCCCTCACAGGCTGCAGTGGGTCCCCAGCCCCCAGGGCTGTGCCCACTGGTCCTGACGAAGCTCGCAGCTGCTGAGGTCAGTccagcgccaagggcacggggccagggcaggcggggcagggcTACCCCAGGCGCACAGAGGCTGCTGGTGTCAACGTGACGCCTTCTGGGGCGCTTGGCATCCCTAGGAGTGGAAGCCGCTGATGAAGTCAAAGCTG---CCTCCTTCAGGAAGACTTTGCTCCCACAGCTGGCGAACAGAAAGTGGAGCAGCGCCAGGAGGATCTGCGGGCACTGCTGAGGGCTTCTATGCAGGGACAGTGCAGTAGGCAGCCGGGGACGAAGACTGCAAGGCAGCCCCCCAGGGCCAGGGGAAGTTCAGAACAGGAGTCATCCGCTGCTCCGCGCATTCTCCATCCCTGGATCAGTACAGGGGCATTTGGACTCTGTGGGGAAGTCGCGGTCTGGGGATACTGGGTCCAGCCTCCAGGTAGAAGCAGGTGATAAACGCACTCCAGCCAGCCCGGAACGCCAGCCAGACTGCGGTGCCCACGATGCCCAGGGTGAGCGCCACGAGGGGCAGGAAATTGGCTAGGGTGAGAGCTCACTGGTAGGGGGCCCGGGAAGTCAAAGACCTGCTGCTCCAGCGCTGCCACCAGCTGCAGGCAGCAGAAGGCGACAAGTGTGTGGCGCCCACGCACTCGCCCATCTCTCCACAGAACTCTTTATCCAACCTTCAATAATTATTCTTTTTATTATATTCAATGATTGTTCTGCTTATTATAGGGAGCAGCTGTCAGTGCAATAACACACTTAACAAATGGTACACCT-GTCCTCAAGGTTAACAAAAACATGAAGACCAGCCCAACCCTGAAAATCAGTTTGCAAACCTTCACTATGTC--AGGCCATTCCTAAAAATTTTTAGGGACAAATTTTGTTTGTGGTAAACAACATAAGGTGGGGTGTGTGCTGAGCCCAAAGCtgaccaattgctcacaatcagtcataactacccattgaattgacgtgattaaccttcagacagtcttgtctcctctcctcaggcccctggaccttggctcacaacctaagactgaacaagcactaaaggacagaccagccccctaacagctcactccaaaaatgagcaggactcccagagaaacgatttttattggagcatcctggttttgccacctgctcaccccactgcctgtccttctctccaaggaggcttctgccagccctgcttatcctttcctagaaaaggaaagccttttcctgtttgatctggagacacttgtagattgagt-----------ttggaatattctccctattgcaatagtcttttagaagaagttttatttttccctacctctagttgatttttaattaataCCAGTGATCTTGAATAAAAGCCTGCACACCtcag------------------------------atgtgtgtgtg------------tgtattttagtatttccatgaatgtaataacaataaaatcaaacaaaaacaaatggataagaaatatgtt-gactagtatctcaaatatgaaaatggcattgccagcagtgatatga-tttttttgc-aactggtaagctttttgaagtataatc-----ttaacctaaaatcttactatcgaaaaatgcagtgtacattaaaatgttctgaaatgcttttatt--catatattaaatggttgtacttgctcaaatatctataaatttgtttttcacttatgtaattgtcttatagaatgtttgaaagtcatgcagaatgtgagacaattttctattgaatacgattgctttatcattgcaagacatgaaacatccctgtttcctgtcaaataattgtacaatagcaATAAATGTAAATATGTGTTTTGTAAAAAAGATATATTTTTGAGTTACAAAACAAGGATTTTAAAACTTGAATTGTTACAGTGAATATGTCTTAATATAGGCTACAGTCACTTTAGATAAAAAATTACCTCACGTCTATTCTTTTCAGTATCACTTAAAGGTGTATATTTAGTGGCAAAGA---GTTTTTTTGTAACTACAGGCAGATACTTTGCCCTATGGCTATTTATGTTATGAAACTGTATTTAAATGAATGTACATATATAAAAGCTGCCACTCTGGC--TGTAAACTATTAAAAGTTATTAAG-ATTAAAAAAT----AAATAAAAATATTTCTGTTTTTCTATGAAATGTCTTAATGCCAGTCCAAATTTAGAGGTTTAAAATGCTTGAAATTAATAAAACCAAGTGTTTCACATATTTAAGTTTGAAAGGCCTTTGTTCTAGTTTTGTTAGTGTAGCAGGCAGACTGCATTTTTTTCTCTCTCATACACCTTCAAAAGGTGGACAGAAAAATTTGATAAAACTTCTAGGGCATTATCTGATGAAACACATTAAACACTAAAGGAGAAATACAACTTCATTGTTTATAAAAGACGTGTAAGAAGGAAACCTGCATACATATATCTATCAGTTTTGTATTTTCAAGAAATATTTGCCTTAAAATGAGCTTCATTGGAATACGTGTCCTCCCACAAAGCCAAGGAAAG-----TAGACAG-AGGATCTGGAAGTCTGCATGTGTGACGTAATTTCATTGAATACATTTCACAAATAAGGCAGAAATGTATCAGTGTGACCCAAAATATTCTCCAAATTTTCTCACAGCAATGTGGCCACATTTATTGTCTTTTACTATGACTAGTCATCATTCCATGCATTTGAACATTGCCTCACCCATTTGCAGCCTCCTATCTCTGCGAATAATTATGGCTAACATTCTCAGCAGTCCAAACATCTTGCAAGTGACAGCTTGAAAAGGCCTACCAGAATGACGTTCACTCTGCCACCTGACTAGCTTGTCGTCCATCTAGACATTGCAGTATTTAGAAGAGTGCTTTTGGTATTATGAATTTGATCCAACACGTGTTCAATTAGATGAAATCTTAAATATTGCACTACGAGTGAATTGGGAAAATGTTAATTTGCTTCTGTAGTTTTAAGTGTACTCTCAGAGGTAGATGAAGACATATTCTATCACTGTAGTCAAGAAATAAAGTAAATAGAAGAAAAAAGATGTTATTTTAGTTTGGTTATGTTTATATTTTGAGTTTTCTTTTCCAGATATAGGAGAACTTACTAAATAC--ACTGACAAAAATGTGGTAGCCCTGGGTTAAATATCATACTTTATTTTTAGTTTATTAATTCCAGGATAGAGTAGAAAAATATGCTCTCTTATATAATATAAAAACGATATGGGGGAAAGAAGTAAAAAATTAACTTAGAGACATCATTAATTAATTTCTTTTATAAATGAAACACTAAATCGTTTCTATTTGTTTTGACAAATAGAGAATATATTTAGAATCAATGCTTTATTTCTTGGAAAGTGGAGTAAGAATGTTAAATGTATTATTCATATTGCATTATTACTATGCACTACAGGCCACATACATTTGTCTTTTCTTCATATTAGACATTATTTAATGGTAAGCGTCCTTTCGAGGGCTATTTTATATAAGTAGTAAAGTATCTGGAATTTCTGAAATAATAAAAGTGACCTAAATCATTGTGTTTGGTAAATTCACAATATCCACATGGCAGGAGGGGAGTGCTAGAGGTAGGGAGGGGAATGCTCATGTTCTCATTATTCCCAAATGGATTCTTCCAAGTCTTCTCACTGGACACATGGATGCACCTCGGTAATACCCAATGTCTTAGATAGCCACAACTGTCTGCACTTTTTAATGAGATACATTTCAACATTATTATTCCTTGTCACCTCAATATCAGATATTTTCTCATGTAATCTTTTACTTCTGAGGAGCTGAATTCTTGATCCATAAACTGAATCCATAGCTAGATATCTGTGGATGTTTTTAAATTATGTGAAAATTTTGTA-TATGCATTTTTCAGGGGAAAGTATCAGAACATCCACCTGGTGATTGTAACAAAAACAATCACTTGTGTTGGTATTTAAGTCTTAATTAATTTGGAAAAATTTGCACACACCTTAAGGTCAGATACTATTTTGTACCCTATATATAAAAACTCC------------ttttttttatttgagattgagtctcactctgttgcccaggttggagtgcaatggcctgatctcggctcactacaaactccacctcccAtaacattaatgatcactaatcacagatcaccataacaaatataataataaggaaatatttaacaaattgtgacgattaccaaaatgtgaaaccgagacacaaagtgagcacaggctgtttcttaagtggcaccaatagacttgttccaccaaggttgacacaaacatgtcatttgtaaataa-aaaaaaga---tcctatctgtgaagcacaataaagagaagtgcaataaaataagataCCTTTGTATTAATTTGGTTAACTTTATTCCAACTTAATGTAAATTAGTTTTAAAACAGTTTGTATAACTCTAAAATGAACCTGGCAAATTTAGAGCAATAATAAAATGATTTAAATTAGAAAAGTCTTTTTTATAAAGGATAAATAACAAATGCCTCATTGGAATTATTAAAGTTgtttcaagttcagctctgagtttcttagaaactaaagtaaaaaagcatgaccagttTCTGAAGTCAAGATAAAATCATGCAATCTTTAACTTAGAAAATTATCTTCTGTGTCATGTCCTAAGCCTAAAACATATGTAAGGACTTGCCCTGACACTCTGTAAGTAGATCCACTCCAATACGCACTGCAGAAATGTTTCCTGGCAAGAACAGCAAATCAGAAGCCTTTTCAGCATGGTAAGGAGGGAGAGAGACTATGCTAT----ATTAAAAAAAATAAGATGGGGAGGAAAAATAGCACCTTAGATAAGTGAGAAGTTTCAAAAGAGGCATGTATAAGGAGAGCAGT i nomLeu3.chr7b N 0 C 0 s rheMac3.chrUn_JH290352 24626 5750 + 56579 actttggaactgggtaactggcagaggttggaacaatttgcagcgctcagaagacaggaaaatgtgggaaagtttgaaacgccaagagacttgttgaatgactttgaccaaaacgctgataatgatatggactatggaatccatgctgaggcagtctctgatggagatgaggaacttgctgggaactggagcaaacgtgactcttgtcacctttGACAAGGTGGTGGTTGAGGAGAGGCCTTGGCAAGCAGTGGCTGTGATGCTTGAATGTAGTGAGGGGCCTGAATGTAATgaggggcctgaagtgaacggaactcagagcagacactgggttttagagtctgaaactacagaaagtctgctgcgttcaagccctgcttcccccaaaatctagcagtgtggcctcaagcaaaccacttcatctctcttggcctcagtttctaaatctgcaaaatgggatttgtaatcacaccccagcccacagaattcagagtcaaatgagaAGGTGAGAAGAGCTCACTTGCCAAGGGACTCTTTCAATGACTTGaggtggagaaactgaggcatcgagagggctagggctctgctagctgtcacccagagatagtgatggacctgtgatgagaagccagggctgcggtccctagttcttcgcgctttcctcagGCTGGGGAGTGAGTGCGGTGAGATGGAAAGGGCGCGCCCTCCTGCTCTTTCTCTCTGGACAGGGGCAGGAAGCTGGGTGAAGGGTGAAAGGAAGAGGCTGGAGAAGGGAGAAAAGC-CCAACCCACACCAAGGCTGCGATTTTTTAAAATGCGGACTCCGCGGCCCCTCCCATGCCCGCCCCATTC--TTCTGAAGTCCTGCTTGTGAAGGAACAAGTCCCAGTCAAAGGCTGCTTCTCCACCTCTCTGACTGCAGACCCAAGGGGCCCGCGCAGGCTGCAGTGGGTCCTGAGCCCCCAGGGCTGTGCCCGCTGGTCCTGACCGAGCTTGCGGCTGCAGAGGTCAGTCCAACGCCAAGGGCACGGAGCCAGGGCAGGCGGGGCAGGGCTACCCCAAGTTCACAGAGGCTGCTGGTGTCAATGTGACGTCTTCTGGGGCACCTGGCATCCCTAGGAGTGG-AGCCGCTGATGAAGTTAAAGCTGCCTCCTCCTTCAGGAAGATTTTGCTCCCATAGCTAGCGAACAGGGAGCGGAGCAGTGCCAGGAGGATCTGCGGGCGCTGCTGAGGGCTTCTATGCAGGGACAGTGCAGCAGGCAGCC------------------------TCCCAGGGCCAGGGGAAGTTCAGGACAGGGGTCGCCGGCAGCCCTGCGCGTTCTCCATCCCTGGATCGGTGCAGGGCCATTTGGATGCTGTGAGAAAGTCGCGGTCTTGGGACATTGGGTCCAGGCTCC-GGTAGAAGCAGGTGATAAACGCACTCCGGCCAGTTCAGAGCGCCAGCCAGGCTGCGGTGCCCACAATGCCCAGGATAGGCGCCACGAGGAATAGGAAATTGGCTAGGGTAGGAGCTCACTGGTAGGTGGCCCGGGAAGTCAAAGATCTGTTGCTCCAGCGCTGCCACCAGCTGCAGGCAGCAGAAGGCGATGAGCATGTGGCACCAGCGCATTCGCCCATCTCTCCACCAACCCGTTTATCCAACCTTCAATGATTA-TCTTTTTATTATATCCAGTGATTCTTCTACTTATTATAGGGAGCAGCTGTCAGTCCAGTAACACACTTAACAAATGATACATCTAGTCCTCAAGGTTAACAAAAACGTGAAGACCAGCCCAACCCTGAAAATCAGTTTGCAAACCTTCACTATGTCTAATGCCATTCCTAATAATTTTTAGGGACAAGTTTTGTTTGTGGTAAACAACATAAGTTGGGGTGTGTGCTGAGCCCAAAGCtaaccaattgctcacaattactcataactacccatcaacttgacttgatcaaacttcagtcagtcttgtctcctctcctcaggcccctggaccttggctcaccacctaaaactgaacaaacactaaacgacagaccaggcccctaacagctcactccaaaaatgagcaggcctcgtagagaaacgatttttgttggagcatcctggttttgccacctgctcacaccaccgcctgtccttctctccaaggaggcttctgccagccctgcttatccttccctagaaaaggaaagccttttcctgtttgatcctgagacccttgtacattgagt-----------ttggaatgttctccctattgcaatcgtctttttgaataagttttatttttccctacctctggTCGATTTTTGATTAATACTAGTGAGCTTGGACGAAAGCCTGCACACCTCAGGG----------------------------gtgtgtgtgtgtgtgtgtgtgtgtgtATTTTAGCCTTACCATGAAGGTAATAACAATAAAATCAAacaaaagcaaatggataagcaatatgttggactaacatctcaaatatgaaaatggcattgccagcagtgatatga-tttatttttgaaatggtaagctttttgaagtataatcttattttaacctaaaatcttactattgaaaaatgcagtgtacattaaaatgttctgaaatgtttttattcacatttattaaatagtcatactcactcagatatctacaaattggtttttcacttatgtaattgtcttatagaatattcaaaagtcatacagaatgtgagataattttctgttgaatatgattgttttatcattgcaagacatcaaacatccctgtttcctgccaaataaatgtacaatagcaATAAATATAAAGGTGTGTTTTTTTTAAAAGACACATTTTTGAGTTACAAAACAAGGATTTTAAAACTTGAATTGTTACAGTGAATATGTCTTAATATAGGCTATGGTCACTTTAGATAAAAAAATACCTCACATCTATTCTTTTCAGTATCACTTAAAGGTGTTCTTTTAGTGGCAAAGA-TTTTATTTTTCTGCCTAGAGGCAGATATTTTGCCATATGGCTATTTATGGTATGAAGCTGTATTTAAATGTATGTACACATATAAAAGCTGCCACTATGGCTATATAAACTATTAAAAGTTATCAAGaataaaaaaataaacaaataaaaatatttCTGTTTTCCTATGAAATGTCTTTACTCCAGTCCAAATTTAGAGGTTTAAAATGCTTGAAATTAATAAAACCAAGTGTTTCACATATTTAAGTTTAAATGGCCTTTGTCCTAGTTTTATTAGTGAAGCAGG-AGACTCCATTTTTTTCACTCTTCTATACCTTCAAAAGGTGGACAGAAAAATTTGATAAAACTTCTAGGGCATTATCTGATGAAACACATTAAACACTAAAGGAGAAATACAACCTCATTGTTTATAACAGACATATAAGAAGGAAACCTGCATACATGTATCTATCAGTTTTGTATTTTCAAGAAATATTTGCCTTAAAGTGAGCTTCATTAGAATACATGTTCTCCTACAAAGCCAAGGAAAACAGGTTAGACACAAGGATCTGGAAGTCTATGTGTGTGACATAATTTCATTCAACACATTCCACAAATAAGGCAGAAATGTATCATTGTGACCCAAGATAGTCTCTAAATTTTCTCAAAGCAATGTGGCCACATCTATTATCTTTTACTATGACTAGTCATCATTTCATGCATTTCAACATCACCTCACCCATTCTCAGCCTCCTATCTCTGAGATTAATTATGGCTAACATTCTCAGCAGT-CAAACATCTTGCAAGTGACAGCTTGAAAAGGCCTACCAGCATGATGTTCACTCTGCCACCTGACTAGCTCGTCTTCCATTTAGACATTGCAGTATTTATAAGAGCGCTTTTAGTATTGTAAATTTCATCCAATATGTGTTCAATGAGATGAA--CTTAAATATTGCACTACATGTTAATTGGGAGAATGTTAATTTGCTTCTGTAGTTTTAAGTGTATTCTCAGAGGTAGATGAAGACAT-----ATCATTGGATTCAAGAAATAAAGCAAATAGAAGAAAAAGTATGTTATTTTAGTTTGGTCATGTTTATGTCTTAAGTTTTCTTTTTCAGATATATGAGAACCTATTAAATAA--ACTGAAAAAAATGTGGTAGCCTTGGGTTAAATATCATACTTTATGTTTTGTTTCTTAATTCCAGGGTAGAGTAGAAAAATATGCTCTCTTATATAACACAAAAATGATATGGGGG-AAGAAGGAAAAAATTAACTTGGAGACATCattaattaatttattttataaatGAAATACTAAATAGTTTCTATTTGTTTTGACAAATAGAGAATACATTTAGAATCAATGCTTTATTTCATGGAAAGTGGAGTGAAAATTTTTAATATATTATTCAGTTTGTATTATTACTATGCACTGCAGATCACATACATTTGTCTTTTCTTCATATTAGACATTAAGTAATGGCAAGTATCCTTTCGAGGGCAATTTAATATAAGTAGTAAAGTATCCGGAATTTCTGAAATAATAAAAGTGACCTAAATCACTGTGTTT----------------------------------------------GGGAGGGGAATGCTCACATTCTCATTATTCCCAAACGGACTCTTAGAAGTCTTCTCACTGGGCACATGGATGCACCTCAGTAATACCCAATGTCTTAGATAGCCACAACTGTCTGCACTTTTTAATGGGATACATGTCAACATTATAATTCCTTGCCACCTCAATATCAGATATTTTCTCATGTAATCTTTTACTTCTGAGGAGCTGAATTCTTAATCCGTAAACTGAATGCATAGCTACATATCTGTGGATGTTTTT-AATTATGTGAAAATTTTGTATGATGCATTTTTCAGAGGAAAGTATCGAAACATCCACCTAGTGATTGTAACAAAAACAATCGCTCGTGTTGATATTTAAGTCTTAATTAATTCAGAAAAATTTGCACACGCCTTAAGGTCAGATATTATTTTGTACTCTACATAAAAAAACTCC----TTTttttttttttttttttggagatagagtcttactctgttgcccaggttggag---------------------------GAACTCCACCTCCCAtgacattaatgatcactgatcacagatcaccgtaacaaatataataataagggaatatttttaaaattgtgatgattaccaaaatgtgaaaccaagacacaaagtgagcacaggctgtttgctaaatcataccaatatacttgtttcaccagtgttgtcacaaacatttcatttgtaaataagaggaaaaaaggccatatctgtaaagcacaataaagagaagtgaaatacaataagatatgtttgTATTAATTTGGTTAACTTTATTCCAACTTAATGTAAATTAGTTTTAAATCAGTTTATAAAACTCTAAAATGAACCTGGCAAATTTAGAGCAATAATAAAATGATTTAAATTAGAGAAGTATTTTTTAAAAAGGTTAAATAACAAATGTCTCATTGGAATTATTAAAGCTGTTTCAAGGTCAGCTCTGGAGTTCTTAGAAACTAAAGTAAAAAAATATGACCAGTTTCTGAAGTCAAGATAAAATCATACAATCTTTAACGTAGAAAATTGTCTTTTGTGTTGTGTCCTAAGCATAAAACAAGTGCAAGGACTTGCCCTGACACTCTGTAAGTCGTTCCACTCCCATACGCACTGCAGAAATGTTTCCTGGCAAGAACAGCAAGTCAGAAGCCTTTTCAGCATGGTAAGGAGGGAGAGAGACTATGCTATG---TATAAAAAAAATAAGATGAGGAGGAACAATAGAGCCTTAGATAAGTGAGAAGTCTCAAAAGAGACATGTATAAGGGGAGCAGT i rheMac3.chrUn_JH290352 N 0 C 0 s macFas5.chrUn_KE145892 228589 5752 + 244635 actttggaactgggtaactggcagaggttggaacaatttgcagtgctcagaagacaggaaaatgtgggaaagtttgaaactccaagagacttgttgaatgactttgaccaaaacgctgataatgatatggactatggaatccatgctgaggcagtctctgatggagatgaggaacttgctgggaactggagcaaacgtgactcttgtcacctttGACAAGATGGTGGTTGAGGAGAGGCCTTGGCAAGCAGTGGCTGTGATGCTTGAATGTAGTGAGGGGCCTGAATGTAATgaggggcctgaagtgaacggaactcagagcagacactgggttttagagtctgaaactacagaaagtctgctgcgttcaagccctgcttcccccaaaatctagcagtgtggcctcaagcaaaccacttcatctctcttggcctcagtttctaaatctgcaaaatgggatttgtaatcacaccccagcccacagaattcagagtcaaatgagaAGGTGAGAAGAGCTCACTTGCCAAGGGACTCTTTCAATGACTTGaggtggagaaactgaggcatcgagagggctagggctctgctagctgtcacccagagatagtgatggacctgtgatgagaagccagggctgcggtccctagttcttcgcgctttcctcagGCTGGGGAGTGAGTGCGGTGAGATGGAAAGGGCGCGCCCTCCTGCTCTTTCTCTCTGGACaggggcaggaagctgggtgaagggtgaaaggaagaggctggagaagggagaaAAGC-CCAACCCACACCAAGGCTGAGATTTTTTAAAATGCGGACTCCGCGGCCCCTCCCATGCCCGCCCCATTC--TTCTGAAGTCCTGCTTGTGAAGGAACAAGTCCCAGTCAAAGGCTGCTTCTCCACCTCTCTGACTGCAGACCCAAGGGGCCCGCGCAGGCTGCAGTGGGTCCTGAGCCCCCAGGGCTGTGCCCGCTGGTCCTGACCGAGCTTGCGGCTGACGAGGTCAGTCCAACGCCAagggcacggagccagggcaggcggggcagggcTACCCCAAGTTCACAGAGGCTGCTGGTGTCAATGTGACGTCTTCTGGGGCACCTGGCATCCCTAGGAGTGG-AGCCGCTGATGAAGTTAAAGCTGCCTCCTCCTTCAGGAAGATTTTGCTCCCATAGCTAGCGAACAGGGAGCGGAGCAGTGCCAGGAGGATCTGCGGGCGCTGCTGAGGGCTTCTATGCAGGGACAGTGCAGCAGGCAGCC------------------------TCCCAGGGCCAGGGGAAGTTCAGGACAGGGGTCGCCGGCAGCCCTGCGCGTTCTCCATCCCTGGATCGGTGCAGGGCCATTTGGATGCTGTGAGAAAGTCGCGGTCTTGGGACATTGGGTCCAGGCTCC-GGTAGAAGCAGGTGATAAACGCACTCCGGCCAGTTCAGAGCGCCAGCCAGGCTGCGGTGCCCACAATGCCCAGGATAGGCGCCACGAGGAATAGGAAATTGGCTAGGGTAGGAGCTCACTGGTAGGTGGCCCGGGAAATCAAAGATCTGTTGCTCCAGCGCTGCCACCAGCTGCAGGCAGCAGAAGGCGATGAGCATGTGGCACCAGCGCATTCGCCCATCTCTCCACCAACCCGTTTATCCAACCTTCAATGATTA-TCTTTTTATTATATCCAGTGATTCTTCTACTTATTATAGGGAGCAGCTGTCAGTCCAGTAACACACTTAACAAATGATACATCTAGTCCTCAAGGTTAACAAAAACGTGAAGACCAGCCCAACCCTGAAAATCAGTTTGCAAACCTTCACTATGTCTAATGCCATTCCTAATAATTTTTAGGGACAAGTTTTGTTTGTGGTAAACAACATAAGTTGGGGTGTGTGCTGAGCCCAAAGCtaaccaattgctcacaattactcataactacccatcaacttgacttgatcaaacttcagtcagtcttgtctcctctcctcaggcccctggaccttggctcaccacctaaaactgaacaaacactaaacgacagaccaggcccctaacagctcactccaaaaatgagcaggcctcgtagagaaacgatttttgttggagcatcctggttttgccacctgctcacaccaccgcctgtccttctctccaaggaggcttctgccagccctgcttatccttccctagaaaaggaaagccttttcctgtttgatcctgagacccttgtacattgagt-----------ttggaatgttctccctattgcaatcgtctttttgaataagttttatttttccctacctctggTCGATTTTTGATTAATACTAGTGAGCTTGGACGAAAGCCTGCACACCTCAGGG--------------------------gtgtgtgtgtgtgtgtgtgtgtgtgtgtATTTTAGCATTACCATGAAGGTAATAACAATAAAATCAAacaaaagcaaatggataagcaatatgttggactaacatctcaaatatgaaaatggcattgccagcagtgatatga-tttatttttgaaatggtaagctttttgaagtataatcttattttaacctaaaatcttactattgaaaaatgcagtgtacattaaaatgttctgaaatgtttttattcacatttattaaatagtcatactcactcagatatctacaaattggtttttcacttatgtaattgtcttatagaatattcaaaagtcatgcagaatgtgagataattttctgttgaatatgattgttttatcattgccagacatcaaacatccctgtttcctgccaaataaatgtacaatagcaATAAATATAAAGGTGTGTTTTTTTTAAAAGACACATTTTTGAGTTACAAAACAAGGATTTTAAAACTTGAATCGTTACAGTGAATATGTCTTAATATAGGCTATGGTCACTTTAGATAAAAAAATACCTCACATCTATTCTTTTCAGTATCACTTAAAGGTGTTCTTTTAGTGGCAAAGA-TTTTATTTTTCTGCCTAGAGGCAGATATTTTGCCATATGGCTATTTATGGTATGAAGCTGTATTTAAATGTATGTACACATATAAAAGCTGCCACTATGGCTATATAAACTATTAAAAGTTATCAAGaataaaaaaataaacaaataaaAATATTTCTGTTTTCCTATGAAATGTCTTTACTCCAGTCCAAATTTAGAGGTTTAAAATGCTTGAAATTAATAAAACCAAGTGTTTCACATATTTAAGTTTAAATGGCCTTTGTCCTAGTTTTATTAGTGAAGCAGG-AGACTCCATTTTTTTCACTCTTCTATACCTTCAAAAGGTGGACAGAAAAATTTGATAAAACTTCTAGGGCATTATCTGATGAAACACATTAAACACTAAAGGAGAAATACAACCTCATTGTTTATAACAGACATATAAGAAGGAAACCTGCATACATGTATCTATCAGTTTTGTATTTTCAAGAAATATTTGCCTTAAAGTGAGCTTCATTAGAATACATGTTCTCCTACAAAGCCAAGGAAAACAGGTTAGACACAAGGATCTGGAAGTCTATGTGTGTGACATAATTTCATTCAACACATTCCACAAATAAGGCAGAAATGTATCATTGTGACCCAAGATAGTCTCTAAATTTTCTCAAAGCAATGTGGCCACATCTATTATCTTTTACTATGACTAGTTATCATTTCATGCATTTCAACATCACCTCACCCATTCTCAGCCTCCTATCTCTGAGATTAATTATGGCTAACATTCTCAGCAGTCCAAACATCTTGCAAGTGACAGCTTGAAAAGGCCTACCAGAATGATGTTCACTCTGCCACCTGACTAGCTTGTCTTCCATCTAGACATTGCAGTATTTATAAGAGCACTTTTAGTATTGTAAATTTCATCCAATATGTGTTCAATGAGATGAA--CTTAAATATTGCACTACATGTTAATTGGGAGAATGTTAATTTGCTTCTGTAGTTTTAAGTGTATTCTCAGAGGTAGATGAAGACAT-----ATCATTGGATTCAAGAAATAAAGCAAATAGAAGAAAAAGTATGTTATTTTAGTTTGGTCATGTTTATGTCTTAAGTTTTCTTTTTCAGATATATGAGAACCTATTAAATAAAC--TGAAAAAAATGTGGTAGCCTTGGGTTAAATATCATACTTTATGTTTTGTTTCTTAATTCCAGGGTAGAGTAGAAAAATATGCTCTCTTATATAACACAAAAATGATATGGGGG-AAGAAGGAAAAAATTAACTTGGAGACATCATTAATTAATTTATTTTATAAATGAAATACTAAATAGTTTCTATTTGTTTTGACAAATAGAGAATACATTTAGAATCAATGCTTTATTTCATGGAAAGTGGAGTGAAAATTTTTAATATATTATTCAGTTTGTATTATTACTATGCACTGCAGATCACATACATTTGTCTTTTCTTCATATTAGACATTAAGTAATGGCAAGTATCCTTTCGAGGGCAATTTAATATAAGTAGTAAAGTATCCGGAATTTCTGAAATAATAAAAGTGACCTAAATCACTGTGTTT----------------------------------------------GGGAGGGGAATGCTCACATTCTCATTATTCCCAAACGGACTCTTAGAAGTCTTCTCACTGGGCACATGGATGCACCTCAGTAATACCCAATGTCTTAGATAGCCACAACTGTCTGCACTTTTTAATGGGATACATGTCAACATTATAATTCCTTGCCACCTCAATATCAGATATTTTCTCATGTAATCTTTTACTTCTGAGGAGCTGAATTCTTAATCCGTAAACTGAATGCATAGCTACATATCTGTGGATGTTTTTAAATTATGTGAAAATTTTGTA-GATGCATTTTTCAGAGGAAAGTATCGAAACATCCACCTAGTGATTGTAACAAAAACAATCGCTCGTGTTGATATTTAAGTCTTAATTAATTCAGAAAAATTTGCACACGCCTTAAGGTCAGATATTATTTTGTACTCTACATAAAAAAACTCC-----ttttttttttttttttttggagatggagtctcactctgttgcccaggttggag---------------------------gaactccACCTCCCAtgacattaatgatcactgatcacagatcaccgtaacaaatataataataagggaatatttttaaaattgtgatgattaccaaaatgtgaaaccaagacacaaagtgagcacaggctgtttgctaaatcataccaatatacttgtttcaccagtgttgtcacaaacatttcatttgtaaataagaggaaaaaaggccatatctgtaaagcacaataaagagaagtgaaatacaataagatatgtttgTATTAATTTGGTTAACTTTATTCCAACTTAATGTAAATTAGTTTTAAATCAGTTTATAAAACTCTAAAATGAACCTGGCAAATTTAGAGCAATAATAAAATGATTTAAAGTAGAAAAGTCTTTTTTAAAAAGGATAAATAACAAATGTCTCATTGGAATTATTAAAGCTGTTTCAAGGTCAGCTCTGGAGTTCTTAGAAACTAAAGTAAAAAAATATGACCAGTTTCTGAAGTCAAGATAAAATCATACAATCTTTAACGTAGAAAATTATCTTTTGTGTTGTGTCCTAAGCATAAAACAAGTGCAAGGACTTGCCCTGACACTCTGTAAGTCGTTCCACTCCAATATGCACTGCAGAAATGTTTCCTGGCCAGAACAGCAAGTCAGAAGCCTTTTCAGCATGGTAAGGAGGGAGAGAGACTATGCTATG---TATAAAAAAAATAAGATGAGGAGGAACAATAGAGCCTTAGATAAGTGAGAAGTCTCAAAAGAGACATGTATAAGGGGAGCAGT i macFas5.chrUn_KE145892 N 0 C 0 s papAnu2.JH684363 2084 5787 - 15146 actttggaactgggtaactggcagaggttggaacaatttgcagtgctcagaagacaggaaaatgtgggaaagtttgaaactccaagagacttgttgaatgactttga-caaaacgctgataatgatatggactaTGAAATCCATGCTGAGGCAGTCtctgatggagatgaggaacttgctgggaactggagcaaacgTGACTCTTGTCACCTTTGACAAGATGGTGGTTGAGGAGAGGCCTTGGCAAGCAGTGGCTGTGATGCCTGAATGTAGTGAGTGGCCTGAATGTAATGAGGGGCCTGAAGTGAACGGAACTCAGAGCAGACACTGGGTTTTAGAGCCTGAAACTACAGAAAGTCTGCTGCGTTCAAGGCCTGCTTCCCCCAAAATCTAGCAGTGTGGCCTCAAGCAAACCACTTCatctctcttggcctcagtttctaaatctgcaaaatgggatttGTAATCACACCCCAGCCCACAGAATTCAGAGTCAAATGAGAAGGTGAGAAGAGCTCACTTGCCAAGGGACTCTTTCAATGACTtgaggtggagaaactgaggcatcaAGAGGGCTAGGGCTCTGCTAGCTGTCACCCAGAGATAGTGACGGACCTGTGATGAGAAGCCAGGGCTGCAGTCCCTAGTTCTTCGCGCTTTCCTCAGGCTGCGGAGTGAGTGTGGTGAGATGGAAAGGGCGCGCCCTCCTGCTCTTTCTCTCTGGACAGGGGCAGGATGCTGGGTGAAGGGTGAAAGGAAGAGGCTGGAGAAGGGAGAAAAGCTCCAACTCACACCAAggctgagattttttaaaatgcggACTCCGTGGCCCCTCCCATGCCCGCCCCATTT--TTCTGAAGTCCTGCTTGTGAAGGAACAAGTCCCAGTCAAAGTCTGCTGCTCCACCTCTCTGACTGCAGACCCAAGGGGCCCGCGCAGGCTGCAGTGGGTCCTGAGCCCCCAGGGCTGTGCCCGCTGGTCCTGACCGAGCTCGCGGCTGCCGAGGTCAGTCCAACGCCAAGGGCACGGGGCCAGGGCAGGCGGGGCAGGGCTACCCCAAGTTCACAGAGGCTGCTGGTGTCAATGTGACGTTTTCTGGGGCACCTGACATCCCTAGGAGTGG-AGCCGCTGATGAAGTTAAAGCTGCCTCCTCCTTCAGGAAGATTTTGCTCCCATAGCTAGCGAACAGGGAGCGGAGCAGTGCCAGGAGGATCTGCGGGCGCTGCTGAGGGCTTCTATGAAGGGACAGTGCAGCAGGCAGCC------------------------TCCCAGGGCCAGGGGAAGTTCAGGACAGGGGTCGCCGGCAGCCCTGCGCGTTCTCCATCCCTGGATCGGTGCAGGGCCATTTGGATGCTGTGAGAAAGTCCCGGTCTTGGGACATTGGGTCCAGGCTCC-GGTAGAAGCAGGTGATAAACGCACTCTGGTCAGTTCAGAGCGCCAGCCAGACTGCGGTGCCCACGATGCCCAGGATAGGCGCCACGAGGAATAGGAAATTGGCTAGGGTAGAAGCTCACTGGTA-GTGGCCCGAGAAGTCAAAGATCTGTTGCTCCAGCGCTGCCACCAGCTGCAGGCAGCAGAAGGCGATGAGCATGTGGCACCAGCGCATTCTCCCATCTCTCCACCAACCCGTTTATCCAACCTtcaataatta-tctttttattatatccAGTGATTCTTCTACTTATTATAGAGAGCAGCTGTCAGTCCAGTAACACACTTAACAAATGATACATCTAGTCGTCAAGGTTAACAAAAACGTGAAGACCAGCCCAACCCTGAAAATCAGTTTGCAAACCTTCACTATGTCTGATGCCATTCCTAATAATTTTTAAGGACAAGTTTTGTTTGTGGTAAACAACGTAAGTTGGGGTGTGTGCTGAGCCCAAAGCTAACCAATTGCTCACAATTACTCATAACTACCCATCAACTTGACTTGATCAAACTTCAGTCAGTCTTGTCTCCTCTCCTCAGGCCCCTGGACCTTGGCTCACCACCTAAAACTGAACAAGCACTAAACGACAGACCAGGCCCCTAACAGCTCACTCCAAAAATGAGCAGGCCTCGTAGAGAAACGGTTTTTGTTAGAGCATCCTGGTTTTGCCACCTGCTCACACCACTGCCTGTCCTTCTCTCCAAGGAGGCTTCTGCCAGCCCTGCTTATCCTTCCCTAGAAAAGGAAAGCCTTTTCCTGTTTGATCCTGAGACCCTTGTACATTGAGTTTGGAATGTTCTTGGAATGTTCTCCCTATTGCAATCGTCTTTTtgagtaagttttatttttccctaccTCTGGTCGATTTTTGATTAATACCAGTGAGCTTGGACGAAAGCCTGCACACCtcaggggtgggtgggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtattttagcaTTACCATGAAGgtaataacaataaaatcaaacaaaagcaAATGGATAAGCAATATGTTGGACTAACAtctcaaatataaaaatggcATTGCCAGCAGtgatatga-tttatttttgaaatggtaaGCTTTTTGAAGTATAATCTTATTTTAACCTAAAATCTTACTATTGAAAAATGCAGTGTACattaaaatgttctgaaatgtttttatt--catttattaaatagtcaTACTCACTCAGATATCTACAAATTGGTTTTTCACTTATGTAATTGTCTTATAGAATATTCAAAAGTCATGCAGAATGTGAGATAATTTTCTGTTGAATATGATTGTTTTATCATTGCAAGACATCAAACATCCCTGTTTCCTGCCAAATAAATGTACAATAGCAATAAATGTAAaggtgtg-tttttttaaaagacacatttttGAGTTACAAAACAAggattttaaaacttgaattgTTACAGTGAATATGTCTTAATATAGGCTATGGTCACTTTAGATaaaaaaaTACCTCACATCTATTCTTTTCAGTATCACTTAAAGGTGTTCTTTTAgtggcaaaga-ttttatttttctgcctagaGGCAGATATTTTGCCATATGGCTATTTATGGTATGAAACTGTATTtaaatgtatgtacacatataaaaGCTGCCACTATGGCTATATAAACTATTAAAAGTTatcaag-attaaaaaataaacaaataaaaatatt--tgttttcctatGAAATGTCTTTACTCCAGTCCAAATTTAGAGGTTTAAAATGCttgaaattaataaaaccaaGTGTTTCACATATTTAAGTTTAAATGGCCTTTGTCCTAGTTTTATTAGTGAAGCAGC-AGACTCCAtttttttCACTCTTCTATACCTTCAAAAGGTGGACAGAAAAATTTGATAAAACTTCTAGGGCATTATCTGATGAAACACATTAAACACTAAAGGAGAAATACAACCTCATTGTTTATAACAGACATATAAGAAGGAAACCTGCATACATGTATCtatcagttttgtattttcaagaaatatttgccttaaAGTGAGCTTCATTAGAATACATGTTCTCCTACAAAGCCAAGGAAAACAGGTTAGATACAAGGATCTGGAAGTCTACGTGTGTGACATAATTTCATTCAACACATTCCACAAATAAGGCAGAAATGTATCATTGTGACCCAAGATAGTCTCTAAATTTTCTCAAAGCAATGTGGCCACCTCTATTATCTTTTACTATGACTAGTCATCATTTCATGCATTTCAACATCACCTCACCCATTCTCAGCCTCCTATCTCTGAGATTAATTATGGCTAACATTCTCAGCAGTCCAAACATCTTGCAAGTGACAGCTTGAAAAGGCCTACCAGAATGATGTTCACTCTGCCACCTGACTAGCTTGTCTTCCATCTAGACGTTGCAGTATTTATAAGAGCGCTTTTAGTATTGTAAATTTCATCCAATATGTGTTCAATGAGATGAA--CTTAAATATTGCACTACATGTTAATTGGGAGAATGTTAATTTGCTTCTGTAGTTTTAAGTGTATTCTCAGAGGTAGATGAAGACAT-----ATCATTGGATtcaagaaataaagcaaatagaagaaaaagtatGTTATTTTAGTTTGGTCATGTTTATgtcttaagttttctttttcagatatatgAGAACCtattaaataa--actgaaaaaaatgtggTAGCCTTGGGTTAAATATCAtactttatgttttgtttcttaattccAGGGTAGAGTAGAAAAATATGCTCTCTTATATAACACAAAAATGATAtggggg-aagaaggaaaaaattaactTGGAGACATcattaatgaatttattttataaaggaaatactAAATAGTTTCTATTTGTTTTGACAAATAGAGAATACATTTAGAATCAATGCTTTATTTCATGGAAAGTGgaatgaaaatttttaatatattattcagTTTGTATTATTACTATGCACTGCAGATCACatacatttgtcttttcttcataTTAGACATTAAGTAATGGCAAGTATCCTTTCGAGGGCAATTTAATATAAGTAGTAAAGTATCCggaatttctgaaataataaaagtgaCCTAAATCACTGTGTTT----------------------------------------------GGGAGGGGAATGCTCACATTCTCATTATTCCCAAACGGACTCTTAGAAGTCTTCTCACTGGGCACATGGATGCACCTCAGTAATACCCAATGTCTTAGATAGCCACAACTGTCTGCACTTTTTAATGGGATACATGTCAACATTATAATTCCTTGCCACCTCAATATCAGATATTTTCTCATGTAATCTTTTACTTCTGAGGAGCTGAATTCTTAATCCGTAAACTGAATGCATAGCTACATATCTGTggatgtttttaaattatgtgaaaatTTTGTA-GATGCATTTTTCAGGGGAAAGTATCGAAACATCCACCTAGTGATTGTAACAAAAACAATCGCTCGTGTTGATATTTAAGTCTTaattaattcagaaaaatttGCACACGCCTTAAGGTCAGATATTATTTTGTACTCTACATaaaaaaactccttttttttttttttttttttttttgagatggagtctcactctgttgcccaggttggag---------------------------gaaCTCCACCTCCCATGACATTAatgatcactgatcacagatcaccataacaaatataataataagggaatatttttaaaattgtgatgattaccaaaatgtgaaaccaagacacaaagtgagcacaggCTGTTTGCTAAATCATACCAATATACTTGTTTCACCAGGGTTGTCACAaacatttcatttgtaaataagagaaaaaaaggccATATCTGTAAAGCACAATAAAGAGAAGTGAAATACAATAAGATATGTTTGTATTAATTTGGTTAACTTTATTCCAACTTAATGTAAATTAGTTTTAAATCAGTTTATAAAACTCTAAAATGAACCTGGCAAATTTAGagcaataataaaatgatttaaagtagaaaagtcttttttaaaaaggataaataacAAATGTCTCATTGGAATTATTAAAGCTGTTTCAAGGTCAGCTCTGGAGTTCttagaaattaaagtaaaaaaatatgaCCAGTTTCTGAAGTCAAGATAAAATCATACAATCTTTAACGTAGAAAATTATCTTCTGTGTTGTGTCCTAAGCATAAAACAAGTGTAAGGACTTGCCCTGACACTCTGTAAGTCGTTCCACTCCAATATGCACTGCAGAAATGTTTCCTGGCCAGAACAGCAAGTCAGAAGCCTTTTCAGCATGGTAAGGAGGGAGAGTGACTATGCTAtg---tataaaaaaaataagatgaggaGGAACAATAGAGCCTTAGATAAGTGAGAAGTCTCAAAAGAGACATGTATAAGGGGAGCAGT i papAnu2.JH684363 N 0 C 0 a score=29932.000000 s hg38.chr1_KI270765v1_alt 167591 34 + 185285 TGCAATTATAAGGAGCAAAATATGGAATGATGAA s nomLeu3.chr7b 60512389 34 - 115148730 TGCAATTATAAGGAGCAAAATATGGAATGATGAA i nomLeu3.chr7b C 0 C 0 s rheMac3.chrUn_JH290352 30376 34 + 56579 TGCAACTATAAGGAGCAACATATGGAATGATGAA i rheMac3.chrUn_JH290352 C 0 C 0 s macFas5.chrUn_KE145892 234341 34 + 244635 TGCAACTATAAGGAGCAACATATGGAATGATGAA i macFas5.chrUn_KE145892 C 0 C 0 s papAnu2.JH684363 7871 34 - 15146 TGCAACTATAAGGAGCAACATATGGAATGATGAA i papAnu2.JH684363 C 0 C 0 e panTro4.chr2A 22202308 300 - 113622374 I a score=699905.000000 s hg38.chr1_KI270765v1_alt 167625 547 + 185285 AAAAGATACTTTAAAGAAAGTTTTCCTCAGTACTTTGCAATGCGCTTGCCACCTTCTGAAGAAAGCTGGCTCCTTCTGGAACCTTAGGGTATTTGGACTCATGCTTTGGAATGGGGTGACCATCTACATCAAGCTAACTTAAATTCAAATTTGTGTGCATAGGATAAGAATAATTGGGTTAAATAAAATTCACTTTTAATCTAAAATGTCATTCATTAGTTTTGACCAACTTTCCTTACCACTGGCCACTTGGTCCTTGTCTTGTTTGACCAGGG-TTGTCAAACAAGGTTTGTTGTTTCCTTCTTTGAAGGAAAGAGTCAGTGTTTCTTCCATTCCAATGCATCCACTTGAGGAATTTTTAATAAAATGGGCAATGAATGGGCAGCAGAAGAAGTTACAGGCCTGCTGATCAAATGCTAAGTAATAAACCCTGGAAATTCTAAACTCGTTTGCATGAAGACCTTGCTTATTTTGTAACTATTATGTATTATCAAATGTATACTTAATTCTTTGAATGTGTTAGTATGTGTTCAAAGTACACCTTAAT s panTro4.chr2A 22202608 546 - 113622374 AAAAGATACTTTAAAGAAAGTTTTCCTCAGTACTTTGCAATGCACTTGCCACCTTCTGAAGAAAGCTGGCTCCTCTTGGAACCTTAGGGTATTTGGACCCATGCTTTGGAATGGGGTGACCATCTACATCAAGCTAACTTAAATTCAAATTTGTGTGCATAGGATAAGAATAATTGGGTTAAATAAAATTCACTTGTAATCTAAAATGTCATTCATTAGTTT-GACCAACTTTCCTTACCACTGGCCACTTGGTCCTTGTCTTGTTTGACCAGGG-TTGTCAAACAAGGTTTGTTGTTTCCTTCTTTGAAGGAAAGAGTCAGTGTTTCTTCCATTCCAATGCATCCACTTGAGGAATTTTTAATAAAATGGGCAACGAATGGGCAACAGAAGAAGTTACAGGCCTGCTGATCAAATGCTAAGTAATAAACCCTGGAAATTCTAAACTCGTTTGCATGAAGACCTTGCTTATTTTGTAACTATTATGTATTATCAAACATATACTTAATTCTTTGAATGTGTTAGTATGTGTTCAAAGTACACCttaat i panTro4.chr2A I 300 C 0 s nomLeu3.chr7b 60512423 543 - 115148730 AAAAGATACTTTAAAGAAAGTTTTCCTCAGTACTTTGCAATGCACTTGCCACCTTCTGAAGAAAGCTGGCTCCTCCTGGAACCTTACGGTATTTGGACCCAGGCTTTGGAATGGGTTGAC---CTTCATCAACCTACCTTAAACTCAAATTTGTGGGCATAGGATAAGAATAATTGGGTTAAATAAAATTCACTTTTAATCTAAAATGTCGTTCCTTAGTTT-GACCAACTTTCCTTACCACTGGCCACTTGATCCTTGTCTTGTTTGACCAGGG-TTGTCAAACAAGGTTTGTTGTTTCCTTCTTTGAAGGAAAGAGTCAGTGTTTCTCCCATTCCAATGCATCCACTTGAGGAATTTTTAATACAATGGGCAATGAATGGGCAATAGAAGAAGTTACAGGACTGCTAATCAAATGCTAAGTAATAAACCCTGGAAATTCTAAACTTGTTAGCATGAAGACCTTGCTTATTTTGTAACTATTATGTATTATCATACGTATACTTAACTCTTTGAATGTGTTAGTAGGTATTCAAAGTATACCTTAAT i nomLeu3.chr7b C 0 N 0 s rheMac3.chrUn_JH290352 30410 547 + 56579 AAAAGATGCTTTAAAGAAAGTTTTCCTCAGTACTTTGCAATGCTCTCGCCACCTTCTGAAGAAAGCTGGCTCCTCCTGTACCCTTAGGGTATTTGGACCCAGGCTTTGGAATGGGGTGACCATCTACATCAAACTACCTTAAACTCAAATTTGTGTGCATAGGATAAGAATAATTGGGTTAAACAAAATTCACTTTTAATCTAAACTGTCATTCGTTAGTTT-GACCAACTTTCTTTACCACTGGCCACTTGATCCTTGTCTTATTTGACCAGGGTTTGTCAAACAAGGTTTGTTGTTTCCTTCTTTGAAGGAAAGAGTCAGTGTTTCTTCCATTCCAATGCATCCACTTGAGGAATTTTTAATAAAATGGGCAATGAATGGGCAGTAGAAGAAGTTACAGGCCTGCTAATAAAACACTAAGTAATAAACTGTGGAAATTCTAAAATCATTTCCATGAAGACCTTGCTTATTTTGTAACTATTATGTATTATCATATGTATACTTAACTCTTTGAATGTGTTAGTATGTGTTCAAAGTATAACttaat i rheMac3.chrUn_JH290352 C 0 C 0 s macFas5.chrUn_KE145892 234375 546 + 244635 AAAAGATGCTTTAAAGAAAGTTTTCCTCAGTACTTTGCAATGCTCTCGCCACCTTCTGAAGAAAGCTGGCTCCTCCTGTACCCTTAGGGTATTTGGACCCAAGCTTTGGAATGGGGTGACCATCTACATCAAACTACCTTAAACTCAAATTTGTGTGCATAGGATAAGAATAATTGGGTTAAACAAAATTCACTTTTAATCTAAACTGTCATTCGTTAGTTT-GACCAACTTTCTTTACCACTGGCCACTTGATCCTTGTCTTATTTGACCAGGG-TTGTCAAACAAGGTTTGTTGTTTCCTTCTTTGAAGGAAAGAGTCAGTGTTTCTTCCATTCCAATGCATCCACTTGAGGAATTTTTAATAAAATGGGCAATGAATGGGCAGTAGAAGAAGTTACAGGCCTGCTAATAAAACACTAAGTAATAAACTGTGGAAATTCTAAAATCATTTCCATGAAGACCTTGCTTATTTTGTAACTATTATGTATTACCATATGTACACTTAACTCTTTGAATGTGTTAGTATGTGTTCAAAGTATAACTTAAT i macFas5.chrUn_KE145892 C 0 C 0 s papAnu2.JH684363 7905 546 - 15146 AAAAGATGCTTTAAAGAAAGTTTTCCTCAGTACTTTGCAATGCTCTCGCCACCTTCTGAAGAAAGCTGGCTCCTCCTGTACCCTTAGGGTATTTGGACCCAGGCTTTGGAATGGGGTGACCATCTACATCAAACTACCTTAAACTCAAATTTGTGTGCATAGGATAAGAATAATTGGGTTAAACAAAATTCACTTTTAATCTAAACTGTCATTCGTTAGTTT-GACCAACTTTCTTTACCACTGGCCACTTGATCCTTGTCTTATTTGACCAGGG-TTGTCAAACAAGgtttgttgtttccttctttgaagGAAAGAGTCAGTGTTTCTTCCATTCCAATGCATCCACTTGaggaatttttaataaaatgggcAATGAATGGGCAGTAGAAGAAGTTATAGGCCTGCTAATAAAACACTAAGTAATAAACTGTGGAAATTCTAAAATCATTTCCATGAAGACCTTGCTTATTTTGTAACTATTATGTATTACCATACGTATACTTAACTCTTTGAATGTGTTCGTATGTGTTCAAAGTATaacttaat i papAnu2.JH684363 C 0 C 0 a score=685866.000000 s hg38.chr1_KI270765v1_alt 168172 875 + 185285 TTtatatatatatatatatatttaaattacataaaataaat-aAGCCACTAAAA-ATTTTTAAACATTTTCTTATATTTCC-TTTCAGTATTTTTATGTGCATGCATCTGTACTTGGTAATATTGCTGAATGCATGTTTGCATtgacaaagcctctccccttgcccaaactctagttgggatcctctaagccacctctcagcctcagctttcagtgttcatcctagtctggcccacatctctcaggtttaggaagaaacttgcaaagaatcccccactctcagtactgatcacctttgatatctgatcaaatttgttatctcccaccaccctccagatgatttctgatcagtctggcctgccttcagtaagaatcctgttcgatctgtttaacccaaatcccctttgcccctgatatttcctcttagtaTCCCCAGTTGAGCCAATTTTCAACCATTAAAAAAATCTTGGACAAAATTAAGTTCAGGTAGGTTCCAGAGTGCTTATGTTCAGTTCTTGGCTTTTTGAAGACCTGGCATATCCTCTTTAAATTGCCTCAATACAAGAAAATACAAAATGGAAAGAAGTAGACATTAGAAATTGGAAAAATGGAGAAATACAGGAATGAACATAAGTTTCTATTTCAAGTAATTAGGTAAATTGTAAGATGTTTATATTTAACTTTTTCTCATTGGCTTTAGCCCCTTGAATCTTTGAGAACATGTTATTACTATAGTTATCGAATGTTATATTTTTTA-TTTTAACGTAGAATGGTATTTTCACTCAAATCTCTTGAAACATatatttatagtcaatagttaaattttatttaatatCAATTGTTCCTTTTTATTAGTATTTTCTTAAAAAAATAATATT s panTro4.chr2A 22203154 871 - 113622374 tttatatatacatatat----ttaaattacataaaataaat-aaGCCACTAAAA-ATTTTTAAACATTTTCTTATATTTCC-TTTCAGTATTTTTATGTGCATGCATCTGTACTTGGTAATATTGCTGAATGCATGTTTGCATtgacaaagcctctccccttgcccaaactctagtcgggatcctctaagccacctctcagcctcagccttcagtgttcatcctagtctggcccacatctctcaggtttaggaagaaacttgcaaagaatcccccactctcagtactgatcacctttgatatctgatcaaatttgttatctcccaccaccctccagatgatttctgatcagtctggcctgccttcagtaagaatcctgttcgatctgtttaacccaaatcccctttgcccctgatatttcctcttagtaTCCCCAGTTGAGCCAATTTTCAACCATTAAAAAAATCTTGGACAAAATTAAGTTCAGATAGGTTCCAGAGTGCTTATGTTCAGTTCTTGGCTTTCTGAAGACCTGGCATATCCTCTTTAAATTGCCTCAATAAAAGAAAATACAAAATGGAAAGAAGTAGACATTAGAAATTGGAAAAATGGAGAAATACAGGAATGAACATAAGTTTCTATTTCAAGTAATTAGGTAAATTGTAAGATGTTTATATTTAACTTTTTCTCATTAGCTTTAGCCCCTTGAACCTTTGAGAACATGTTATTACTATATTTATCGAATGTTATATTTTTTA-TTTTAACGTAGAATGGTATTTTCACTCAAATCTCTTGAAACATATATTTATAGTCAATAGttaaattttatttaatatcaattgttcatttttattagtattttcttaaaaaaataatatt i panTro4.chr2A C 0 C 0 s rheMac3.chrUn_JH290352 30957 868 + 56579 ----tatatatatatat----ttaaattacataaaataaataaaGCCACTAAAACATTTTTAAACATTTTCTTATATTTCCTTTTCAGTATTTTTATATGCATGCATCTGTACTCGATAATATTGCTGAATACATGTTTGTGTtgacaaagcctctcctcttgccaaaattcttgtcatgatcctctaaggcccctctaggtctcagccttcagcgttcttcctagtctggcccacatctctcaggtttaggaagaaacttgcagagaatcccacactcccaatactgataacctttgatatctgatccaatttgttatctcccaccactctccagatgatttctgatcagcttggcctgtcttcagtaagaatcctgttaggtctgtttaacctaaatcccctttacccctaaagtttcctcttagtaTCCCCTGTTGAACAAATTTTCAAACATTAAAAAAA-CTTGGACAAAATTAAGTTCAGATAGGTT-CAGAGTATTTAGGTTCAGCTCTTGGCTTTCTGAATACCTGACATATCCTCTTTAAATGGCCTCAAAACAGGAAAATACAAAATGAATAGAAGTAGACATTAGAAATGGGAAAAATGGAGAAATACAGGAAAGAACAGAAGTTTCTATTTCAGATAATTAGATAAATTTTAAGATGTTTATAGTTAACTTTTGTTAATTAGGTTTAGCCCCTTGAACCTTTGAGAACATGTTATTACTATTGTTATTGAACATTATATTTTTTA-TTTTAATGTAGAATGGTATTTTCACTCAAATCTCTTGAAATAGATATTTATAGTTAATAGTTAAAATGTATTTAATACTGATTGTTTCATTTTATTAGTATTTTCTCTTAAAAATAATTTT i rheMac3.chrUn_JH290352 C 0 C 0 s macFas5.chrUn_KE145892 234921 867 + 244635 ----TTTATATATATAT----TTAAATTACATAAAATAAATAAAGCCACTAAAACATTTTTAAACATTTTCTTATATTTCC-TTTCAGTATTTTTATATGCATGCATCTGTACTCGATAATATTGCTGAATACATGTTTGTGTtgacaaagcctctcctcttgccaaaattcttgtcatgatcctctaaggcccctctaggtctcagccttcagcgttcttcctagtctggcccacatctctcaggtttaggaagaaacttgcagagaatcccacactcccaatactgataacctttgatatctgatccaatttgttatctcccaccactctccagatgatttctgatcagcttggcctgtcttcagtaagaatcctgttaggtctgtttaacctaaatcccctttatccctaaagtttcctcttagtaTCCCCTGTTGAACAAATTTTCAAACATTAAAAAAA-CTTGGACAAAATTAAGTTCAGATAGGTT-CAGAGTATTTAGGTTCAGCTCTTGGCTTTCTGAATACCTGACATAACCTCTTTAAATGGCCTCAAAACAGGAAAATACAAAATGAATAGAAGTAGACATTAGAAATGGGAAAAATGGAGAAATACAGGAAAGAACAGAAGTTTCTATTTCAGATAATTAGATAAATTTTAAGATGTTTATAGTTAACTTTTGTTAATTAGGTTTAGCCCCTTGAACCTTTGAGAACATGTTATTACTATTGTTATTGAACATTATATTTTTTA-TTTTAACGTAGAATGGTATTTTCACTCAAATCTCTTGAAATAGATATTTATAGTTAATAGTTAAAATGTATTTAATACTGATTGTTTCATTTTATTAGTATTTTCTCTTAAAAATAATTTT i macFas5.chrUn_KE145892 C 0 C 0 s papAnu2.JH684363 8451 857 - 15146 ----tttatatatatat----ttaaattacata----aaataaagccactaaaacatttttaaacattttcttatatttcc-tttcagtatttttatatGCATGCATCTGTACTCGATAATATTGC-AAATACATGTTTGTGTTGACAAAGCCTCTCCTCTTGCCAAAATTCTTGTCAGGATCCTCAAAGGCCCCTCTAGGTCTCAGCCTTCAGTGTTCTTCCTAGTCTGACCCACATCTCTCAGGTTTAGGAAGAAACTTGCAGAGAATCCCACACTCCCAATACTGATCACCTTTGATATCTGATCCAATTTGTTATCTCCCACCACTCTCCAGATGATTTCTGATCAGCTTGGCCTGTCTTCAGTAAGAATCCTGTTAGGTCTGTTTAACCTAAATCCCCTTTATCCCTAAAGTTTCCTCTTAGTATCCCCTGTTGAACaaattttcaaacattaaaaaaa-cttgGACAAAATTAAGTTCAGGTAGGTT-CAGAGTATTTAGGTTCAGCTCTTGGCTTTCTGAATACCTGACATATCCTCTTTAAATGGCCTCAaaacaggaaaatacaaaatgaatagaAGTAGACATTAGAAAtgggaaaaatggagaaatacagGAAAGAACAGAAGTTTCTATTTCAGATAATTAGATaaattttaagatgtttataGTTAACTTGTGTTAATTAGGTTTAGCCCCTTGAACCTTTGAGAACAtgttattactattgttattgaacattatattttttatttttaacgtAGAATGGTATTTTCACTC-AATCTC-TGAAATAGATATTTATAG-TAatag-taaaatgtatttaatactga-tgtttcatttcattagtattttctc-taaaaataatttt i papAnu2.JH684363 C 0 C 0 a score=7390.000000 s hg38.chr1_KI270765v1_alt 169047 7 + 185285 ggcccag s panTro4.chr2A 22204025 7 - 113622374 ggcccgg i panTro4.chr2A C 0 C 0 s rheMac3.chrUn_JH290352 31825 7 + 56579 ggccggg i rheMac3.chrUn_JH290352 C 0 C 0 s macFas5.chrUn_KE145892 235788 7 + 244635 ggccggg i macFas5.chrUn_KE145892 C 0 N 0 s papAnu2.JH684363 9308 7 - 15146 ggccggg i papAnu2.JH684363 C 0 N 0 s calJac3.chr8 94474410 7 + 128169293 ggctggg i calJac3.chr8 N 0 C 0 a score=845.000000 s hg38.chr1_KI270765v1_alt 169054 1 + 185285 c s panTro4.chr2A 22204032 1 - 113622374 c i panTro4.chr2A C 0 C 0 s rheMac3.chrUn_JH290352 31832 1 + 56579 t i rheMac3.chrUn_JH290352 C 0 C 0 s macFas5.chr3 7349643 1 - 192294377 c i macFas5.chr3 N 0 C 0 s papAnu2.chr3 6914329 1 - 180432695 c i papAnu2.chr3 N 0 C 0 s calJac3.chr8 94474417 1 + 128169293 c i calJac3.chr8 C 0 C 0 a score=117936.000000 s hg38.chr1_KI270765v1_alt 169055 104 + 185285 gcagtggttcacacctgtaatcccagcactttgggaggctaaggtgggcagatcacttgaggtcgggagttggagaccagcctgagcaacttggag--------acaacctt s panTro4.chr2A 22204033 104 - 113622374 gcagtggttcacacctgtaatcccagcactttgggaggctaaggtgggcagatcacttgaggtcgggagttggagaccagcctgagcaacttggaa--------acaacctt i panTro4.chr2A C 0 C 0 s nomLeu3.chr13 7274744 94 - 110113093 gtggtggctcacgtctgtaatcccagcactttgggatgccaaggctggtggatcac--aaggtcaggtgtttgagaccagcctgaccaacatgg----------------ta i nomLeu3.chr13 N 0 C 0 s rheMac3.chrUn_JH290352 31833 104 + 56579 acggtggttcacgtctgtaatcccagcacttttggaggccaaggcgagtggatcacctgaggtcgggagtttgagaccagcctgaccgacatggagaaacccca-------- i rheMac3.chrUn_JH290352 C 0 N 0 s macFas5.chr3 7349644 94 - 192294377 gtggtggctcacgattgtaatcccagcactttgggatgccaaggctggtggat--cccaaggtcaggtgtttgagaccagcctgaccaacatgatg---------------- i macFas5.chr3 C 0 C 0 s papAnu2.chr3 6914330 94 - 180432695 gtggtggctcacgattgtaatcccagcactttgggatgccaaggctggtggat--cccaaggtcaggtgtttgagaccagcctgaccaacatgatg---------------- i papAnu2.chr3 C 0 C 0 s calJac3.chr8 94474418 102 + 128169293 acggtggctcacgcgtgtaatcccagcactttgggaggccaaggtgggtggat--catgaggtcaggagttcgagaccagactgacgaacatggtgaaacctca-------- i calJac3.chr8 C 0 C 0 a score=10276.000000 s hg38.chr1_KI270765v1_alt 169159 9 + 185285 tctctacta s panTro4.chr2A 22204137 9 - 113622374 tctctacta i panTro4.chr2A C 0 C 0 s nomLeu3.chr13 7274838 9 - 110113093 tcgctccta i nomLeu3.chr13 C 0 C 0 s rheMac3.chr3 7184236 8 - 198365852 tctctact- i rheMac3.chr3 N 0 C 0 s macFas5.chr3 7349738 8 - 192294377 tctctact- i macFas5.chr3 C 0 C 0 s papAnu2.chr3 6914424 8 - 180432695 tctctact- i papAnu2.chr3 C 0 C 0 s chlSab2.chr21 6814232 8 - 127223203 tctctact- i chlSab2.chr21 N 0 C 0 s calJac3.chr8 94474520 9 + 128169293 tttctgcta i calJac3.chr8 C 0 C 0 a score=627957.000000 s hg38.chr1_KI270765v1_alt 169168 230 + 185285 aaaatacaaaaattagccggacgtggtggtgcatgcctgtaatcccagctactcaggaggcttgaggcaagagaattgcttgaacctgggaggtagaggttgcagtgagccgagatcgcaccaccgcactctagcctgggtgacagagcgagactccatctcaaaaaaaaagaaagaaagaaaaTG-CCAGACATTTATT-GAAGGGCTGGAATGGTATAGTG-AAGTGTTCT s panTro4.chr2A 22204146 230 - 113622374 aaaatacaaaaattagccgggcgtggtggtgcatgcctgtaatcccagctactcaggaggcttgaggcaagagaattgcttgaacctgggaggtagaggttgcagtgagccgagatcgcaccaccgcactctagcctgggtgacagagcgagactccatctcaaaaaaaaagaaagaaagaaaaTG-CCAGACATTTACT-GAAGGGCTAGAATGGTATAGTG-AAGTGTTCT i panTro4.chr2A C 0 C 0 s ponAbe2.chr7 7575826 233 - 157549271 aaaatacaaaaattagccggacctggtggcgcatgcctgtaatcccagctactcaggaggcttgaggcaggagaatcgcttgaccctgggaggtagaggttgcagtgagccgagatcgcaccaccgcactgtagcctgggtgacagagcaagactccatctcaaaaaaaaagaaagaaagaaaatgcccagacatttattaaaagggctggaatggtatagtgaaagtgttct i ponAbe2.chr7 N 0 C 0 s nomLeu3.chr13 7274847 229 - 110113093 -aaatacaaaaattatccgggcctggtggcgcatgcctgtaatcccagctactcaggaggcttgaggcaggagaatcgcttgaacctgggaggtagaggttgcagtgagccgagattgcaccaccgcactctagcctgggtggtagagtgagactccatctcaaaaaaaaagaaagaaagaaaatg-ccagacatttatt-aaaggactggcatggtatagtg-aagtgttct i nomLeu3.chr13 C 0 C 0 s rheMac3.chr3 7184244 228 - 198365852 aaaatacaaaaattagccgggcatggtggtgcatgcctgtaatcccagctactcatgaggc-tgaggcaggagaatcacttgaacccgggaggtggaggttgcagtgagccgagatcgcaccaccacactttagcctgggtgacagagcgagactccatctcaaaaacaaacaaacaaaaaagcag--cagacatttact-gaaggactggaatggtatagta-aagtgttct i rheMac3.chr3 C 0 C 0 s macFas5.chr3 7349746 228 - 192294377 aaaatacaaaaattagccgggcatggtggtgcatgcctgtaatcccagctactcatgaggc-tgaggcaggagaatcacttgaacccgggaggtggaggttgcagtgagccgagatcgcaccaccacactttagcctgggtgacagagcgagactccatctcaaaaacaaacaaacaaaaaagcag--cagacatttatt-gaaggactggaatggtatagta-aagtgttct i macFas5.chr3 C 0 C 0 s papAnu2.chr3 6914432 228 - 180432695 aaaatacaaaaattagccgggcatggtggtgcacgcctgtaatcccagctactcatgaggc-tgaggcaggagaatcacttgaacccgggaggtggaggttgcagtgagccgagatcgcaccaccacactttagcctgggtgacagagcgaaactccatctcaaaaacaaacaaacaaaacagcag--cAGACATTTATT-GAAGGGCTGGAATGGTATAGTA-AAGTGTTCT i papAnu2.chr3 C 0 C 0 s chlSab2.chr21 6814240 228 - 127223203 aaaatataaaaattagccgggcatggtggtgcacacctgtaatcccagctactcacgagac-tgaggcaggagaatcacttgaacccgggaggtggaggttgcagtgagccgagatcgcaccaccacactctagcctgggtgacagagcaagactccatctcaaaaacaaacaaacaaaaaagcag--cagacatttatt-gaagggctggaatggtatagta-aagtgttct i chlSab2.chr21 C 0 C 0 s calJac3.chr8 94474529 208 + 128169293 aaaatacaaaaattagctgggcatggtggtacgtgcctgtaatcccagctactcaggagat-ggaggcaggagaatcgcttgat---------------------tgagccgagatcgcgccactgcacttcagcctgggcaaccgagtgagactcggtctcaaaaaaaaaaaaaaaaaaaaaaaG-CCAGACATTTATT-AAAGGTCTGGAATGGTATAGTG-AAGTGTTCT i calJac3.chr8 C 0 C 0 a score=2166009.000000 s hg38.chr1_KI270765v1_alt 169398 719 + 185285 GAGTCAGTTGggctctgattgataaagagcttggcatg-tttgaaggacagcaaggaagccagaatagctggagcatagcagcagggagacaagtgccacaagatga-gctggagaaaggcactgggaaaggtttgtctt---ttaagtgctctgagaagcaattg--aagatttgaaatagaatagtgacttgcttgatcacatttgtacttttgaaaagttcctctggctgctgtg--gggaaaggcttgagtagatgcagggt-gggagaagcataaccagcagtagactcttgtagcaggttaggtgagagatggtggtggccacgagtgggctgctagtggtggaagtgacaagaagcagaaggatcggagacaaaacttgaagataaaaagtcttgaatttgctgatgatttgcattgacgaggtgtt-gggggagaggactgaaggagcagaggagagtgacaa--gggactgg-atgccatttataaggatgggg-aagactggg-a--tgaaa--ccggttaagggagaaatttt---aaccatggcaaaatt-aagaggggtttt-atgtgagaaaatggaaa-tgctaaggagg-aagttgaaaat-cctgctaattt--ggagatctttgattaaaactagaaataagaatg-tgggaagcatcaacttgcaaga----------tgccctcattgtagataacaccatttagga-------------------------tctaggctcaa-gccctgggaaactccagggctt s panTro4.chr2A 22204376 709 - 113622374 GAGTCAGTTGGGCTCTGACTGATAAAGAgcttggcatg-tttgaaggacagcaaggaagccagaatagctggagcatagcagcagggagacaagtgccacaagatga-gctggagaaaggcactgggaaaggtttgtctt---ttaagtgctctgagaagcaattg--aagatttgaaatagaatagtgacttgcttgatcacatttgtacttttgaaaagttcctctggctgctgtg--gggaaaggcttgagtagatgcagggt-gggagaagcataaccagcagcagactcttgtagcaggttaggtgagagatggtggtggccacgagtgggctgctagtggtggaagtgacaagaagtagaaggatcggagacaaaacttgaagataaaaagtcttgaatttgctgatgatttgcattgacgaggtgtt-gcgggagaggactgaaggagcagaggagagtgacaa--gggactgggatgccatttataatgatgggggaagactgggga--tgaaa--ccggttaagggagaaatttt--taaacatggcaaactttaagaggggtttttatgtgagaaaatggaaaatgctaaggaag-gnnnnnnnnnn-------------------tctttgattaaa-ctagaaataagaatg-tgggaagcatcaacttccaaga----------tgccctcattgtagataacaccatttagga-------------------------tctaggctcaa-gccctgggaaactccagggctt i panTro4.chr2A C 0 C 0 s ponAbe2.chr7 7576059 729 - 157549271 gagtcagttgggctctgattaataaagagcttggcatg-tttgaaggacagcaaggaagccagaatagctggagcatagcagcagggagacaagtgccacaagatga-gttggagaaaggcactgggaaaggtttgtctt---ttaagcgctctgagaagcaactg--aaggtttgaaatagaatagtgacttgcttgatcacatttgtacttttgaaaagttcctctggctgctgtg--gggaaaggcttgagtagatgcagggt-gggagaagcataaccagcaggagactcttgtagcaggttaggtgagagatggtggtagccacgactgagctgctagtggtggaagtgacaagaagtagaaggatcggagacaaaacttgaagataaaaagtcttgaatttgctgatgatttgccttgacgaagtgttggggggggaggactgaaggagcagaggagagtgacaatcgggactgg-atgccatttataaggatggggaaggactggg-a--tggaaacacggttaagggagaaatttt---aaacatggcaaaccttaagagggggttttgtgtgag-aaatggaaa-tgctaagaaggaaagttgaaaatccctgctaattt--ggagatctctgattaaaactagaaataagaatg-tgggaagcatcaacttccaaga----------tgccctcattgtagataataccatttagga-------------------------tctaggctcaaggccctgggaaactccagggctt i ponAbe2.chr7 C 0 C 0 s nomLeu3.chr13 7275076 720 - 110113093 gagtcagttgggctctgattgataaagagcttggcatgttttgaaggacagcaaggaagccagaatagctggagcatagcagcagggagacaagtgccacaagatga-gttggagaaaggcactgggaaaggtttgtctt---ttaagtgctctgagaagcaattg--aaggtttgaaatagaatagtgacttgctagatcacatttgtacttttgaaaagttcctctggctgctgtg--gggaaaggcttgagtagatgcagggt-gggagaagcataaccagcagtagactcttacagcaggttaggtgagagatggtggtggccacgactgagctgctagcggtggaagtaacaagaagtagaaggatcggagacaaaacttgaagataaaaagtcttgaatttgctgatgatttgcattgacaaagtgtt-gggggagaggactgaaggagcagaggagagtgacaa--gggactgg-atgccatttataaggataggg-aagactggg-a--tgaaa--ccggttaagggataaatttt---aaacatggcaaactt-aagaggggtttt-gtgtgagaaaatggaaa-tgctaagaagg-aaggtgaaaat-cctgctaattt--ggagatctctgattaaaactagaaataagaatg-tgggaagcatcaacttccaaga----------tgccctcattgtagataataccatttagga-------------------------tctaggctcaa-gccctgggaaactccagggctt i nomLeu3.chr13 C 0 C 0 s rheMac3.chr3 7184472 719 - 198365852 gagtcagttgggctctgactgataaagagcttggcatg-tttgaaggacag-aaggaagccagagtagcc-gagcacagtagcagggagacaagtgccacaacacgaggttggagaaaggcactgggaaaggtttgtctt---ttaagtgctttgagaagcagttg--aaggtttgaaatagaatagtgacttgcttgatcacatttgtacttgcgcaaagttcctctggctgctgtg--gggaaaggctggagtagatgcaggct-gggaacagcataaccagcagtagactcttgcagcatgttaggcgagagatggtggtggcgacaactgggctgctggcggtggaagtgacaagaaatagaaggatcagagacaaaacttgaagataaaaagtcttgaatttactgatgatctgcattgacgaagtgtt-gggggagaggactgaaggagcagaggagagtgacaa--gggactgg-gtgccatttataaggatgggg-aagactggg-a--tgaaa--ccggttaagggagaaatttt-ttaaacatggcaaactt-aaga--ggtttt-gtgtgagaaaatggaaa-tgctaagaagg-aagttgaaaat-cctgctaattt--ggagatacctgattaaaactagatacaagaatgttaagaggcaacaacttccaaga----------caccctcgttgtagataataccatttcagg-------------------------tctaggctcaa-gccctgggaaactccagggctt i rheMac3.chr3 C 0 C 0 s macFas5.chr3 7349974 719 - 192294377 gagtcagttgggctctgattgataaagagcttggcatg-tttgaaggacagcaaggaagccagagtagcc-gagcacagtagcagggagacaagtgccacaagatgaggctggagaaaggcactgggaaaggtttgtctt---ttaggtgctttgagaagcag-tg--aaggtttgaaatagaagagtgacttgcttgatcacatttgtacttgcgcaaaggtcctctggctgctgtg--gggaaaggctggagtagatgcaggct-gggaacagcataaccagcagtagactcttgcagcatgttaggcgagagatggtggtggcgacaactgggctgctggcggtggaagtgacaagaagtagaaggatcagagacaaaacttgaagataaaaagtcttgaatttactgatgatctgcattgacgaagtgtt-gggggagaggactgaaggagcagaggagagtgacaa--gggactgg-gtgccatttataaggatgggg-aagactggg-a--tgaaa--ccggttaagggagaaatttt-ttaaacatggcaaactt-aaga--ggtttt-gtgtgagaaaatggaaa-tgctaagaagg-aagttgaaaat-cctgctaattt--ggagATACCTGATTAAAACTAGATACAAGAATGTTAAGAGGCAACAACTTCCAAGA----------CACCCTCGTTGTAGATAATACCATTTCagg-------------------------tctaggctcaa-gccctgggaaactccagggctt i macFas5.chr3 C 0 C 0 s papAnu2.chr3 6914660 721 - 180432695 GAGTCAGTTGGGCTCTGATTGATAAAGAGCTTGGCATG-TTTGAAGGACAGCAAGGAAGCCAGAATAGCCGGAGCATAGTAGCAGGGAGACAAGTGCCACAAGATGAGGTTGGAGAAAGGCACTGGGAAAGGTTTGTCTT---TTAAGTGCTTTGAGAAGCAGTTG--AAGGTTTGAAATAGAATAGTGACTTGCTTGATCACATTTGTACTTGCGCAAAgttcctctggctgctgtg--gggaaAGGCTTGAGTAGATGCAGGCT-GGGAACAGCATAACCAGCAGTAGACTCTTGCAGCATGTTAGGCGAGAGATGGTGGTGGCGACAACTGGGCTGCTGGTGGTGGAAGTGACAAGAAGTAGAAGGATCAGAGACAAAACTTGAAGATAAAAAGTCTTGAATTTACTGATGATCTGCATTGACGAAGTGTT-GGGGGAGAGGACTGAAGGAGCAGAGGAGAGTGACAA--GGGACTGG-GTGCCATTTATAAGGATGGGG-AAGACTGGG-A--TGAAA--CCGGTTAAGggagaaatttt-ttaaacatggCAAATTT-AAGA--GGTTTT-GTGTGAGAAAATGGAAA-TGCTAAGAAGA-AAGTTGAAAAT-CCTGCTAATTT--GGAGATACCTGATTAAAACTAGATACAAGAATGTTAAGAGGCAACAACTTCCAAGA----------CACCCTCGTTGTAGATAATACCATTTCGGG-------------------------TCTAGGCTCAA-GCCCTGGGAAACTCCAGGGCTT i papAnu2.chr3 C 0 C 0 s chlSab2.chr21 6814468 720 - 127223203 gagtcagttgggctctgattgataaagagcttggcatg-tttgaaggacagcaaggaagccagaatagccggagcatagtagcagggagacaagtgccacaagatgaggttggagaaaggcactgggaaaggtttgtctt---ttaagtgctctgagaagcagctg--aaggtttgaaatagaatagtgacttgcttgatcacatttgtacttttgcaaagctcctctggc-gctgtg--gggaaaggcttgagtaaatgcaggct-gggaacagcataaccagcagtagactcttgcagcatgttaggcgagagatggtggtggccacaactgggctgctggcggtggaagtgacaagaagtagaaggatcagagacaaaacttgaagataaaaagccttgaatttacagatgatcttcattgacgaagtgtt-gggggagaggactgaaggagcagaggagagtgacaa--gggactgg-gtgccatttataaggatgggg-aagactggg-a--tgaaa--ccggttaagggagaaatttt-ttaaacatggcaaactt-aaaa--ggtttt-gtgtgagaaaatggaaa-tgctaagaagg-gagttgaaaat-cctgctaattt--ggagatcTCTGGTTAAAACTAGATACAAGAATGTTAAGAGGCAACAACTTCTAAGA----------CGCCCTCGTTGTAGATAATACCATTTTGGG-------------------------TCTAGGCTCAA-GCCCTGGGAAACTCCTGGGCTT i chlSab2.chr21 C 0 C 0 s calJac3.chr8 94474737 710 + 128169293 GAGTCAGTTGggctctgattgatgaagagcttggcatg-tctgaaggacagcaaggaagccagaatagctggagcatagcagcagggagacaagtaccacaagatgaggttggaggagggcactgggaaaggtttctctt---ttaagtactctgagaagta--tg--aagatttgaaatggaatagtgacttgcttagtcacatttgtacttttgaaaagttcctctggctgctgtg--gataaaggcttgagtagatgaagggt-gggagaagcataaatagcagtagactcttgcagcaggttaggtgagagatggtgatggccaggactggcctgctggcaggggaagtg---caaagtggaatgatcggagacaaaacttgcagataaaaagtcttggatttactgatgatttgccttgaggaagtgtt-ggttcagaggatcgaaggagcagaggagaatgacga--gggactag-ataccatttataaggatgggg-aagactggg-a--tgaaa--ctagttaagagagaaatttt---aaacatggcaaactt-aaga--gggtgt-gtatgagaaaatggaaa-tgctaagaagg-aagttgaaaat-cctgctaattt--ggagatagcaggttataactaaaaataagaatg-tgggagacgt---cTTTCAAGA----------GGCCCTCAACATAGATAATACCATTTCGAA-------------------------TCTAGGCTCAA-GCCCTGGGAAACTCTGGGGCTT i calJac3.chr8 C 0 I 2252 s canFam3.chr16 43578790 651 - 59632846 gagtcaggaggccccca---gctaaagagaatggcatg-tttaaaggAAAGCAAGGTAGCTGGGTCACAC---CCATTTCATGAGAGAGG-----GCCACAGGATAAAGTGGGAGAGAGACACCGGGAAAGGATTGCAGTAAGTtaagtgccttgagaagctgttggaagggtttaaaacaaggtggtgtcttgctccatcagatttacatttttgc-aagtccttctggctgttgtgcagggaagggcttagggagatgcagggtagggagaatcatga--------------------------------------------------------------------------------------------------agaGCCtgaagac----tgtgccgaatttactgatggtttggattgaaggagtggc-aggggagagtgatgagggagaagaacagatcagatg--agggctgg-aatccatttctaaagatgggg-gagattgtg-agccagaa--ctgggtaagggagagattgtagtagacgtggtaaactg-gaga--gatttg-gtgtgacaggatggaag-tgctaagaagg-aagttgaaaac-tgtactgacttccgcaggaacatg-ttggaattagaaatgtaaatt-tgggagacaacaaccttcaagatggtgtttactggcctccttagagatcgtaccatttagaaagagactacacagagaagagcgttgtctaggctcaa--ccccgggaaacact-gggctt i canFam3.chr16 N 0 C 0 a score=7949616.000000 s hg38.chr1_KI270765v1_alt 170117 2421 + 185285 t-ggaagtcaaatagaggaagaacacgtacaggagatgaagaaagattagcgagg-aagtCAGTGAATTATCCACAGGTGGGCTGCTGC--CAAATCCAGCAGAACAGTATGCC--AGATGTTAGGAGCATGAGTAAAATGAGAAAAGAGAAACGGCTTTTgacaaca-------------------cttccctactaatagtagggaa--gaagacataggtacagatt-caagttgatttgaaattatgaaagtgaggtaattgacctgcagtggttgctgctcagtgaaatcagcatagtgattacctgagctaggttagagatttgatgggtaagaaagaacacctgagggtaatcctggagggggaaaaaaataaagtgttt--gctggagagaat-gagttgaattgctggacttcaatgtgtgtgggttgagtttgtgacttaaaaatgaaaccagtctattgcttgtgtggcttt--tc-caAAATAC-CGTTATTCC--GTTACCTATCTCTTACCCCAA-GAGT-AGTCA-CATTC-TTATTT---CTGGTTATTTTAATTCCTGGTGGTATTTTTATGTGATTAATGAGATAGTACTTGTTA--ATTTGATGATATTCTAGAAACCTGGTAAGTACTATGTACCTTGTCTTAAGTTTTGGTTACTTGATTGGTAAAA-TTAT-GCATGCACCATTGAATTACCTAATTCAAAATATATCCTTGTATTGTTTGACATTTGTCT--TGTTTTTCTTTAAAATGTTATCTTTGTGGAGTAAACA-TTTTTCTTTATGCTGTTTAGCATCT---TCAGATTAGTTCAGGGTATTGCTGAATGTGGTTGTTTGGAAGTAAAATGCTTTAGTTTTAGTTATATAGATTTTAATAAGATACTAC-TTTCTATATAATTTATCAGGTACTTTAGGCATTTTAATTTGCAAATTTAGGACAATTTGCTTTAACGTTTC-TT------CACTTTTGTCCATTGGATGTAATTTCCATAAAGTATTCA-TTTCCC-TGAGTAAAAACCGAAA--CCAAACCGGCAACTAATGG-TCACT-GAAGAAAGAGTGATTAAATGCTAAGAT-TATAATGGTATTTGCATTTTAATGT----T----ACCAGCTCTCTACAGTGTAAAGTTTATGCATTTATCTATTGCTTATGTTTCTCATTGCATTCTTT-GGCCTACTGGTTTT-GGTTGTTTATAGCTATAGAATATAGAATT-CCTTAT-GGTTATCCA-TTTCTCCTTTTAAGTAGAGTGATAGTTGTTAGAAGAAAAATAACCCCCCAATACTTTCTTCT----AGTGTTAATTCTTAAAGTGTGATTGACTTTTATTTACTTTTTGGTGCAGTAATTGCAGTTCATGAGTCAATGTTGATGTCA-TATAAACCTTAATTTTTA--ATGTTTCATTGTAGTGATGTCTC---------------------------TGTAGCAGCAAACATTTAAGTTATTT--GTTATACTTAAATGTTTAAATCACTG-TTAGTGATTAGCTTATTTTGCCTT-CCTTGAAGCAATTTGTCCTAAATTTCCATATGTTTGCATTTGTTTTTGCTGTTCTAAAATT-CCTTAGTTGCTGGCTTTGACCTTTTATGTTGCTGAGTTTTACACATCTATTTTCTCAACTGCCATATCCTAGGAGGCTTGGAGTACCCATAATACAGTGAGCCCACCTTCCTGGTCCCCAGACATTTCAGGAGGTCGGGAAATTTTTAAACCCAGGCAGCTTCCTGGCAGTGCCATTTGGAGCATCAAAGTGGTAAATAAAATTGCATTTACATTCATATATCATTTCTGTCTGATTTGTTTTGCCCTACTGGG--TGTAAAGAATTAAATCTTTCTTTTCTAGATTG-------AGCTTCCAGAAACACTTTTTAAATCTAAA-AATTTTAATGTAAAGAAATAATATGCTTGCATTTAAAAATC--------------------------------------------AA-TATACATTTTTAAT-ACCTCTTTTTATGGTTAATTCCTTT-TGTTGTGATTACTACCGGTTTTATGAGGGAGAAGTCCTTGACATGTAGACCAAAAGGT-AATTAAGGACC-TTTTCATTCATGAT-ATCATAAAACTTTGTTGC-TTAGAAAAAAGCAAAAGAAAAAACTCCATTAATTTA-TTATGTTCTTATGGAGAAGAAATACCAAAATTGTGG-CAGATTTCATTGTCTGT--TTAAT-ACC-TTAAAATGACAAGGCTTTTT-----CCCCCATGACATTGGTT-GATGGCT-GTGCCAGTCC-TTGA-----------AGTGAGTTAAGTAG---TGTGATGCA-TTTTGAAGAG-AAAAAAA-TTAATTTGAAAAAGTATTAA----CTCAAAAGTTAAAATACTTCATTGACTGGAGATGACAG-TTTTTCTTCATATTCTATATTTAAT---ATTCTGGAATATGGCTGTTTAATTCAGACTAATCAAGGATTTT-AAGGAATTCTAGATTATAC-TTTATTTTCTTTCATGACTGGAAGAACTATTT------------------TTTTT--TAACCTCCCTA-CCTCCCCCTGATATCATCC-AAGATAT s panTro4.chr2A 22205085 2416 - 113622374 t-ggaagtcaaatagaggaagaacacgtacaggagatgaagaaagattagcgagg-aagtcagtgaaatatccacaggtgggctgCTGC--CAAATCCAGCAGAACAGTATGCC--AGATGTTAGGAGCATGAGTAAAATGAGAAAAGATAAATGGCTTTTgacaaca-------------------cttccctactaatagtagggaa--gaagacataggtacagatt-caagttgatttgaaattatgaaagtgaggtaattgacctgcagtggttgctgctcagtgaaatcagcatagtgattacctgagctaggttagagatttgatgggtaagaaagaacacctgagggtaatcctggaagggaaaaaaa-----gtgttt--gctggagagaat-gagttggattgctggacttcaatgtgtgtgggttgagtttgtgacttaaaaatgaaaccagtctattgcttgtgtggcttt--tc-caAAATAC-TGTTATTCC--ATTACCTATCTCTTACCCCAA-GAGT-AGTCA-CATTC-TTATTT---CTGGTTATTTTAATTCCTGGTGGTATTTTTATGTGATTAATGAGATAGTACTTGTTA--ATTTGATGATATTCTAGAAACCTGGTAAGTACTATGTACCTTGTCTTAAGTTTTGGTTACTTGATTGGTAAAA-TTAT-GCATGCACCATTGAATTACCTAATTCAAAATATATTCTTTTATTGTTTGACATTTGTCT--TGTTTTTCTTTAAAATGTTATCTTTGTGGAGTAAACA-TTTTTCTTTATGCTGTTTAGCATCT---TCAGATTAGTTCAGGGTATTGCTGAATGTGGTTGTTTGGAAGTAAAATGCTTTAGTTTTAGTTATATAGATTTTAATAAGATACTAC-TTTCTATATAATTTATCAGGTACTTTAGGCATTTTAATTTGCAAATTTAGGACAATTTGCTTTAACGTTTC-TT------CACTTTTGTCCATTGGATGTAATTTCCATAAAGTATTTA-TTTCCC-TAAGTAAAAACCGAAA--CCAAACCGACAACTAATGG-TCACT-GAAGAAAGAGTGATTAAATGCTAAGAT-TATAATGGTATTTGCATTTTAATGT----T----ACCAGCTCTCTACGGTGTAAAGTTTATGCATTTATCGATTGCTTATGTTTCTCATTGCATTCTTT-GGCCTACTGGTTTT-GGTTGTTTATAGCTATAGAATATAGAATT-CCTTAT-GGTTATCCA-TTTCTCCTTTTAAGTAGAGTGATAGTTGTTAGAAGTAAAATAACCCCCCAATACTTTCTTCT----AGTGTTAATTCTTAAAGTGTGATTGACTTTTATTTACTTTTTGGTGCAGTAATTGCAGTTCATGAGTCAATGTTGATGTCA-TATAAACCTTAATTTTTA--ATGTTTCATTGTAGTGATGTCTC---------------------------TGTAGCAGCAAACATTTAAGTTATTT--GTTATACTTAAATGTTTAAATCACTG-TTAGTGATTAGCTTATTTTGCCTT-CCTTGAAGCAATTTGTCCTAAATTTCCATATGTTTGCATTTGTTTTTGCTGTTCTAAAATT-CCTTAGTTGCTGGCTTTGACCTTTTATGTTGCTGAGTTTTACACATCTATTTTCTCAACTGCCATATCCTAGGAGGCTTGGAGTACCCATAATACAGTGAGCCCACCTTCCTGGTCCCCAGACATTTCAGGAGGTCGGGAAATTTTTAAACCCAGGCAGCTTCCTGGCAGTGCCATTTGGAGCATCAAAGTGGTAAATAAAATTGCATTTACATTCATATATCATTTCTGTCTGATTTGTTTTGCCCTACTGGG--TGTAAAGAATTAAATCTTTCTTTTCTAGATTG-------AGCTTCCAGAAACACTTTTTAAATCTAAA-AATTTTAATGTAAAGAAATAATATGCTTGCATTTAAAAATC--------------------------------------------AAGTATACATTTTTAAT-ACCTCTTTTTATGGTTAATTCCTTT-TGTTGTGATTACTACCGGTTTTATGAGGGAGAAGTCCTTGACATGTAGACCAAAAGGT-AATTAAGGACC-TTTTCATTCATGAT-ATCATAAAACTTTGTTGC-TTAGAAAAAAGCAAAAGAAAAAACTCCATTAATTTA-TTATGTTCTTATGGAGAAGAAATACCAAAATTGTGG-CAGATTTCATGGTCTGT--TTAAT-ACC-TTAAAATGACAAGGCTTTTT-----CCCCCATGACATTGGTT-GATGGCT-GTGCCAGTCC-TTGA-----------AGTGAGTTAAGTAG---TGTGATGCA-TTTTGAAGAG-AAAAAAA-TTAATTTGAAAAAGTATTAA----CTCAAAAGTTAAAATACTTCATTGACTGGAGATGACTG-TTTTTCTTCATATTCTATATTTAAT---ATTCTGGAATATGGCTGTTTAATTCAGACTAATCAAGGATTTT-AAGGAATTCTAGATTATAC-TTTATTTTCTTTCATGACTGGAAGAACTATTT------------------TTTTT---AACCTCCCTA-CCTCCCCCTGATATCATCC-AAGATAT i panTro4.chr2A C 0 C 0 s ponAbe2.chr7 7576788 2495 - 157549271 tgggaagtcaaatagaggaagaacacgtacaggagatgaagaaagattagcgagg-aagtCATTGAAATATCCACAGGTGGGCTGCTGC--CAAATCCAGCAGAACAGTATGCCAGAGATGTTAGGAGCATGAGTAAAATGAGAAAAGAGAAATGGCTTTTgacaaca-------------------cttccctactaacagtagggaa--gaagacataggtacagattccaagttgatttgaaattatgaaagtgaggtaattgacctgcagtggttgctgctcagtgaaatcagcatagtgattacctgagctaggtcagagatttgatgggtaagaaagaacacctaagggtaatccctggagggaaaaaaaataaagtgttttgtctggagagaatggagttggattgctggacttcaatgtgtgtgggttgagtttgtgacttaaaaatgaaaccagtctattgcttgtgtggcttttctc-caAAATACTTGTTGTTTCCAATTACCTATCTCTTACCCCAAGGAGTAAGTCACCATTCTTTATTT---CTGGTTATTTTAATTCCTGGTGGTATTTTTATGTGATTAATGAGATACTACTTGTTA--ATTTGATGATATTCTAGAAACCTGGTAAGTATTATGTACCTTGTCTTAAGTTTTGGTTACTTAATTGGTAAAA-TTATAGCATGCACCATTGAATTACCTAATTCAAAATATATTCTTTTATTGTTTGACATTTGTCTCGTGTTTTTCTTTAAAATGTTATCTTTGTGGAGTAAACA-TTTTTCTTTGTGCTGTTTAGCATCTTCATCAGATTAGTTCAGGGTATTGCTGAATGTGGTTGTTTGGACGTAAAATGCTTTAGTT----TTATATAGATTTTAATAAGATACTACTTTTCTATATAATTTATCAGGTACTTTAGGCATTTTAATTTGCAAATTTAGGACAATTTGCTTTAACATTTCTTT------CACTTTTGTCCATTGGATGTAATTTCCATAAAGTATTCATTTTCCC-TAAGTAAAAATCCAAAACCCAAACCGACAACTAATGGTTCACT-GAAGAAAGAGTGATTAAATGCTAACAT-TATAATGGTATTTGCATTTTAATGT----T----ACCAGCTCTCTACAGTTTAAAGTTTATGCATTTATCGATTGCTTATGTTTCTCATTGCATTCTTTGGGCCTACTGGTTTTGGGTTGTTTATAGCTATAGAATATAGAATTCCCTTATGGGTTATCCATTTTCTCCTTTTAAGTAGAGTGATAGTTGTTAGAAGAAAAATACTCCCCCAATACTTTCTTCT----AGTGTTAATTCTTAAAGTGTGATTGACTTTTATTTACTTTTTGGTGCAGTAATTGCAGTTCATGAGTCAATGTTGATGTCA-TATAAACCTTAATTTTTA--ATGTTTCATTGTAGTGATGTCTCAGGCAGAATAAAATATTTAATGTAAATTGTAGCAGCAAACATTTAAGTTATTTAAGTTATACTTAAATGTTTAAATCACTGTTTAGTGATTAGCTTATTTTGCCTTCCCTTGAAGCAGTTTGTCCTAAATTTCCATACGTTTGCATTTGTTTTTGCTATTCTAAAATTCCCTTAGTTGCTGGCTTTGACCTTTTATGTTGCTGAGTTTTACACATCTATTTTCTCAACTGCCATATCCTAGGGGGCTTGGAGTACCCATAATACAGTGAGCCCACCTTCCTGGTCCCCAGACATTTCAGAAGGTCGGGAAATTTTTAAACCCAGGCAGCTTCCTGGCAGTGCCATTTGGAGCATCAAAGTGGTAAATAAAATTGCATTTACATTCATATATCATTTCTGTCTGATTTGTTTTGCCCTACTGGA--TGTTAAGAATTAAA--TTTCTTTTCTAGATTG-------AGCTTCCAGAAACACTTTTTAAATCTAAAGAATTTTAATGTAAAGAAATAATATGCTTGCATTTAAAAATC--------------------------------------------AAGTATACATTTTTAAT-ACCTCTTTTTATGGTTAATTCCTTT-TGTTGTGATTACTACTGTTTTTATGAGGGAGAAGTCCTTGAGATGTAGACCAAAAGGTAAATTAAGGACCTTTTTCATTCATGAT-ATCATAAAACTTTGTTGCTTTAGAAAAAAGCAAAAGAAAAAACTCCATTAATTTATTTATGTTCTCATGGAGAAGAAATACCAAAATTGTGGCCAGATTTCATTGTATGG--TTAAT-ACCTTTAAAATGACAAGGCTTTTC-----CCCCCATGACATTGGTTCGATGGCTCCTGCCAGTCCTTTGA-----------AGTGAGTTAAGTAG---TGTGATGCATTTTTGAAGAG-AAAAAAAGTTAATTTGAAAAAGTATTAA----CTCAAAAGTTAAAATACTTCATTGAGTAGAGATGACAG-TTTTTCTTCATATTCTATATTTAAT---ATTCTGGAATATGGCTGTTTAATTTGGACTAATCAAGGATTTT-AAGGAATTCTAGATTATACTTTTATTTTCTTTCATGACTGGAAGAACTATTT------------------TTTTT--TAACCTCCCTACCCTCCCCCTGATATCATCC-AAGATAT i ponAbe2.chr7 C 0 C 0 s nomLeu3.chr13 7275796 2471 - 110113093 t-ggaagtcaaatagaggaagaacacatacaggagatgaagaaagattagcgagg-aagtcagtgaaacatccacaggtgggctgctgc--caaatctagcagaacagtatgcc--agatgttaggagcatgagtaaaatgaggaaagagaaatggcttttgacaacacagagg--ATCTA-AGACCCTGGACTACtaatagtagggaa--gaagacatgggtacagatt-caagttgatttgaaattatgaaagtgttgtaactgacctgcagtggttgctgctcagtgaaatcagcatagtgattaccggagctaggttagagatttgatgggtaagaaagaacacctaagggtaatcctgga--gggaaaaaaataaagtgttt--gctggagagaat-gagttggattgctggacttcaatgtgtgtgggttgagtttgtgacttaaaaatgaaaccagtctgttgcttgtgtggcttt--tctcAAAATAC-TGTTATTCC--ATTACCTATCTCTTACCCCAA-GAGT-AGCCA-CATTG-TTATTT---CTGGTTATTTTAATTCCTGATGGTATTTTTATGTGATTAATGAGATACTACTTGCTA--ATTTGATGATATTCTAGAAACCTGGTAAGTACTATGTACCTTGTCTTAAGTTTTGGTTACTTAATTGGTAAAA-TTATAGCATGCACCATTGAATTACCTAATTCAAAATATATTCTTTTATTGTTTGACATTTGTCTTGTGTTTTTCTTTAAAATGTTGTCTTTATGGAGTAAACA-TTTTTCTTTATGCTGTTTAGCATCTTCATCAGATTAGTTCAGGATATTGCTGAATGTGGTTGTTTGGAAGTAAAATGCTTTAGTTTTAGTTATATAGATTTTAATAAGATACTAC-TTTCTATATAATTTATCAGGTACTTCAGGCATTTTAATTTGCAAATTTAGGACAATTTGCTTTAACATTTC-TT------CACTTTTGTCCATTGGATGTAATTTCCATAAAGTATTCA-TTTCCC-TAAGTAAAAACCGAAA-CCCAAAACGACAACTAATGG-TCACT-GAAGAAAGAGTGATTAAATGCTAAGAT-TATAATGGTATTTGTATTTTAATGT----T----ACCAACTCTCCACAGTTTAAAGTTTATGCACTTATCGATTGCTTATATTTCTCATTGCATTCTTT-GGCCTACTGGATTT-GGTTGTTTATAGCTATAGAATATAGAATT-CCTTAT-AGTTATCCA-TTTCTCCTTCTAAGTAGAGTGTTAGTTGTTAGAAGAAAAGCAATCCCCCAATACCTTCTTCT----AGTG----TTCTTAAAGTGTGATTGACTTTTATTTACTTTTTGGTGCAGTAATTGCAGTTCATGAGTCAATGTTGATGTCA-TATAAACCTCAATTTTTA--ATGTTTCATTGTAGTGATGTCCCAGGCAGAGTAAAATATTTAATGTAAATTGTGGCAGCAAACATTTAAGTTATTTAAGTTATACTTAAATGTTTAAATCACTG-TTAGTGATTAGCTTATTTTGCCTT-CCTTGAAGCAATTTGTCCTAAATTTCCATACGTTTGCATTTGTTTTTGCTGTTCTAAAATT-CCTTAGTTGCTGGCTTTGACCTTTTATGTTGCTGAGTTTTACACATCTATTTTCTCAACTGCCATATCCTAGGGGGCTTGGAGTACCCATAATACAGTGAGCCCACCTTCCTGGTCCCCAGACATTTCAGAAGGTCGGGAAATTTTTAAACCCAGGCAGCTTCCTGGCAGTGCCATTTGGAGCATCAAAGTGGTAAATAAAATTGCATTTACATTCATATATCATTTCTGTCTGATTTGTTTTGCCCTACTGGA--TGTTAAGAATTAAATCTTTCTTTTCTAGATTG-------AGCTTCCAGAGACACTTTTTAAATGTAAA-AATTTTAATGTAAAGAAATAATATGCTTGCATTTAAAAATC--------------------------------------------AAGTATACATTTTTAAT-ACCTCTTTTTATGGTTAATTCCTTT-TGTTGTGATTACTACTGTTTTTGTGAGGGAGAAGTCCTTGACATGTAGACCAAAAGGT-AATTAGGGACC-TTTTCATTCATGGT-ATCATCAAACTTTGTTGC-TTAGAAAAGAGCAAAAGAAAAAACTCCATTAATTTA-TTATGTTCTCATGGAGAAGAAATACCAAAATTGTGG-CAGATTTCATTGTCTGC--TTAAT-ACC-TTAAAATGATAAGGCTTTTT-----CCCCCATGACATTGGTT-GATGGCT-CTGCCAGTCC-TTGA-----------AGTGAGTTAAGTAG---TGTGATGCA-TTTTAAAGAG-AAAAAAA-CTAATTTGAAAAAGTATTAA----CTCAAAAGTTAAAATACTTCATTGACTAGAGATGACAG-TTTTTCTTCATATTCTATATTTAAT---ATTCTGGAATATGGCTGTTTAATGTAGACTAATCAAGGATTTT-AAGGAATTCTAGATTATAC-TTTATTTTCTTTCATGACTGGAAGAACTATTT------------------TTTTTTTTAATCTCCCTA-CCTCCCCCTGATATCATCC-AAGATAT i nomLeu3.chr13 C 0 C 0 s rheMac3.chr3 7185191 2483 - 198365852 t-ggaagtcaaatacaggaagaacatgtacgggagatgaagaaagattagcgagg-aagtcagtgaaacatccacaggtgtgctgctgc--caaatccagcagaatagtatgcc--acatgttaggagcatgagtaaaatgagaaaagagaaatggcttttgacaatacagaggttaccta-agaccctggactactaatagtagggaa--gaagacataggtacagatt-caagttgatttgagattatgaaagtgaggtaattgACCTGCAGTGGTTGCTGCTTAGTGAAATCAGCATAGTGATTACGTGAGCTAGGTTAGAGATTTGATGGGTAAGAAAGAATACCCAGGGGTGATCCTGGA-GGGAAAATAAATAAAGTCTTT--GCTGGAGAGAGT-GAGTTGGATAGCCGGACTTCAGTGTCTGTGGATTGAGTTTGTGACTTAAAAATGAAACCAGTCTATTGCTTGCATGGCTTT--TCTCAAAATAC-TGTTATTCC--ATTACCTGTCTCTTACTCCAA-GAGT-AGTCA-CATTC-TTGTTT---CTAGTTATTTTAATTCCTGGTGGTATTTTTATGTGATTAATGAGATACTACTTGTTA--ATTTGATAATATTCTAGAAACCCGGTAAGTACTATGTACCTTGTCTTAAGTTTTGGTTACTTAATTGGTAAAA-TTATAGCATGCACCATTGATTTACCTAATTCAAAATAGATTATTTTATTGTTTGACATTTGTCTTGTGTTTTTCTTTAAAATGTTATCTTTGTGGAGTAAACA-TTTTTTTGTATGCTGTTTAGCATCTTCATCAGATTAGTTCAGGGTGTTGCTGAATGTGGTTATTTGGATGTAGAATGCTTTAGTTTTAGTTATATAGCTTTTAATAAGATACTA--TTTCTATATAATTTATCAGATACTTTAGGCATTTTAATTTGCAAATTTAGGACAATTTGCTTTAACATTTC-TT------CGTATTTGTCCATTGGATGTAATTTCCACAAA-TATTCA-TTTCCC-TAAGTAAAAACTGAAA-CCCAAACCCACAACTAATGG-TCACT-GAAGAAGGAGTGATTAAATGCTAACACAAATAATGGTATTTGTATTTTAATGT----T----ACCAACTCTCCACAGTTTAAAGTTTATGCATTTATCGATTGCTTATGTTTCTCATCTCATTCTTT-GGCCTACTGGTTTT-GGTCGTTTATAGCTATAGAATATAGAATT-CCTTAT-GGTTATCCA-TTTCTCCTTTTAAGTAGAATGATAGTTGTTAGAAGAAAAATAATCCCCCAGTACTTTCTTCT----AGTGTTAATCCTTAAAGTGTGATTGACCTTTATTTACTTTTTGGTGCAGTAATTGCAGTTCATGAGTCAATGTTGATGTCA-TATAAACCTTAATTTTTA--ATGTTTCATTGTAGTGATGTCTCAGCCAGAATTAAATATTTAATGTAAATTGTAGCCGCAAACATTTAAGTTATTTAAGTTATACTTAAATGTTTAAGTCACTG-TTAGTGATAAGCTTATTTTGCCTT-CCTTGAAGCAACTTGTCCTAAATTTCCATACGTTTGCATTTGTTTTTGCTGTTCTAAAATT-CCTTAGTTGCTGGCTTTGACCTTTTATGTTGCTGAGTTTTACACATCTGTTTTCTCAACTGCCATATCCTAGGGGGCTTGGAGTACCCATAATACAGTGAGCCCACCTTCCTGGTCCCCAGACATTTCAGAAGGTCGGGAAATTTTTAAACCCAGGCAGCTTCCTGGCAGTGCCATTTGGAGCATCAAAGTGGTAAATAAAATTGCATTTACATTCATATATCATTTCTGTCTGA-TTGTTTTGCCCTACTGGA--TGTTAAGAATTAAATCTTTCTTTTCTAGATTG-------AGCTTCCAGAGACACTTTTTAAATCTAAA-AATTTTAATGTAAAGAAATAATA----TGCATTTAAAAATC--------------------------------------------AAGTACACATTTTTAAT-ACCTCTTTTTATGGTTAATTCCTTT-TGTTGTGATTACTACTGTTTTTATGAGGGAGAAGTCCTTGACATGTAGACCAAAAGGT-AATTACGGACA-TTTTCATTCACGAT-ATCATAAAACTTTGTTGC-TTAGAAAAAAGCAAAAG-AAAAACTCCATTAATTTA-TTATGTTCTCATGGAGAAGAAATACCAAAATTGTGG-CAGATTTCATTGTCTGTGGTTAAT-ACC-TTAAAGTGACAGGGCTTTTC-----CCCCCATGCCATTGGTT-GGTGACT-CTGTCAGTCC-TTGA-----------AG-----TAAGTAG---TGTGATGCA-TTTTGAAGAG-AAAAAAA-TTAATTTGGAAAAGTATTAA----CTCAAAAGTTAAAATACCTCATTGACTAGAGGTGACAA-TTTTTCTTCATCTTCCATATTTAAT---ATTCTGGAATATGACTGTTTAATTTAGACTCATCAAGGATTTT-AAGGAATTCTAGATTATAC-TTTATTTTCTTTCATGACTGGAAGAACAAttcttttttttttttttttttttttt--tAACTTCCCTA-CCTCCCCC-GATATCATCC-AAGATAT i rheMac3.chr3 C 0 C 0 s macFas5.chr3 7350693 2479 - 192294377 t-ggaagtcaaatacaggaagaacatgtacgggagatgaagaaagattagcgagg-aagtcagtgaaacatccacaggtgtgctgCTGC--CAAATCCAGCAGAATAGTATGCC--ACATGTTAGGAGCATGAGTAAAATGAGAAAAGAGAAATGGCTTTTGACAATACAGAGGTTACCTA-AGACCCTGGACTACTAATAGTAGGGAA--GAAGACATAGGTACAGATT-CAAGTTGATTTGAGATTATGAAAGTGAGGTAATTGACCTGCAGTGGTTGCTGCTTAGTGAAATCAGCATAGTGATTACGTGAGCTAGGTTAGAGATTTGATGGGTAAGAAAGAATACCCAAGGGTGATCCTGGA-GGGAAAATAAATAAAGTCTTT--GCTGGAGAGAGT-GAGTTGGATAGCCGGACTTCAATGTCTGTGGATTGAGTTTGTGACTTAAAAATGAAACCAGTCTATTGCTTGCATGGCTTT--TCTCAAAATAC-TGTTATTCC--ATTACCTGTCTCTTACTCCAA-GAGT-AGTCA-CATTC-TTGTTT---CTAGTTATTTTAATTCCTGGTGGTATTTTTATGTGATTAATGAGATACTACTTGTTA--ATTTGATAATATTCTAGAAACCCGGTAAGTACTATGTACCTTGTCTTAAGTTTTGGTTACTTAATTGGTAAAA-TTATAGCATGCACCATTGATTTACCTAATTCAAAATAGATTATTTTATTGTTTGACATTTGTCTTGTGTTTTTCTTTAAAATGTTATCTTTGTGGAGTAAACA-TTTTTTTGTATGCTGTTTAGCATCTTCATCAGATTAGTTCAGGGTGTTGCTGAATGTGGTTATTTGGATGTAGAATGCTTTAGTTTTAGTTATATAGCTTTTAATAAGATACTAT-TTTCTATATAATTTATCAGATACTTTAGGCATTTTAATTTGCAAATTTAGGACAATTTGCTTTAACATTTC-TT------CGTATTTGTCCATTGGATGTAATTTCCACAAA-TATTCA-TTTCCC-TAAGTAAAAACTGAAA-CCCAAACCCACAACTAATGG-TCACT----GAAGGAGTGATTAAATGCTAACACAAATAATGGTATTTGTATTTTAATGT----T----ACCAACTCTCCACAGTTTAAAGTTTATGCATTTATCGATTGCTTATGTTTCTCATCTCATTCTTT-GGCCTACTGGTTTT-GGTCGTTTATAGCTATAGAATATAGAATT-CCTTAT-GGTTATCCA-TTTCTCCTTTTAAGTAGAATGATAGTTGTTAGAAGAAAAATAATCCCCCAGTACTTTCTTCT----AGTGTTAATCCTTAAAGTGTGATTGACCTTTATTTACTTTTTGGTGCTGTAATTGCAGTTCATGAGTCAATGTTGATGTCA-TATAAACCTTAATTTTTA--ATGTTTCATTGTAGTGATGTCTCAGCCAGAATTAAATATTTAATGTAAATTGTAGCAGCAAACATTTAAGTTATTTAAGTTATACTTAAATGTTTAAGTCACTG-TTAGTGATAAGCTTATTTTGCCTT-CCTTGAAGCAACTTGTCCTAAATTTCCATACGTTTGCATTTGTTTTTGCTGTTCTAAAATT-CCTTAGTTGCTGGCTTTGACCTTTTATGTTGCTGAGTTTTACACATCTATTTTCTCAACTGCCATATCCTAGGGGGCTTGGAGTACCCATAATACAGTGAGCCCACCTTCCTGGTCCCCAGACATTTCAGAAGGTCGGGAAATTTTTAAACCCAGGCAGCTTCCTGGCAGTGCCATTTGGAGCATCAAAGTGGTAAATAAAATTGCATTTACATTCATATATCATTTCTGTCTGA-TTGTTTTGCCCTACTGGA--TGTTAAGAATTAAATCTTTCTTTTCTAGATTG-------AGCTTCCAGAGACACTTTTTAAATCTAAA-AATTTTAATGTAAAGAAATAATA----TGCATTTAAAAATC--------------------------------------------AAGTACACATTTTTAAT-ACCTCTTTTTATGGTTAATTCCTTT-TGTTGTGATTACTACTGTTTTTATGAGGGAGAAGTCCTTGACATGTAGACCAAAAGGT-AATTACGGACA-TTTTCATTCACGAT-ATCATAAAACTTTGTTGC-TTAGAAAAAAGCAAAAG-AAAAACTCCATTAATTTA-TTATGTTCTCATGGAGAAGAAATACCAAAATTGTGG-CAGATTTCATTGTCTGTGGTTAAT-ACC-TTAAAGTGACAGGGCTTTTC-----CCCCCATGCCATTGGTT-GGTGACT-CTGTCAGTCC-TTGA-----------AG-----TAAGTAG---TGTGATGCA-TTTTGAAGAG-AAAAAAA-TTAATTTGGAAAAGTATTAA----CTCAAAAGTTAAAATACCTCATTGACTAGAGGTGACAA-TTTTTCTTCATCTTCCATATTTAAT---ATTCTGTAATATGACTGTTTAATTGAGACTCATCAAGGATTTT-AAGGAATTCTAGATTATAC-TTTATTTTCTTTCATGACTGGAAGAACAAttc--ttttttttttttttttttttt--tAACTTCCCTA-CCTCCCCC-GATATCATCC-AAGATAT i macFas5.chr3 C 0 C 0 s papAnu2.chr3 6915381 2436 - 180432695 T-GGAAGTCAAATACAGGAAGAACATGTACGGGAGATGAAGAAAGATTAGCGAGG-AAGTCAGTGAAACATCCACAGGTGTGCTGCTGC--CAAATCCAGCAGAATAGTATGCC--ACATGTTAGGAGCAtgagtaaaatgagaaaagagaaatggctTTTGACAATACAGAGGTTACCTA-AGACCCTGGACTACTAATAGTAGGGAA--GAAGACATAGGTACAGATT-CAAGTTGATTTGAGATTATGAAAGTGAGGTAATTGACCTGCAGTGGTTGCTGCTTAGTGAAATCAGCATAGTGATTACGTGAGCTAGGTTAGAGATTTGATGGGTAAGAAAGAATACCCAAGGGTGATCCtgga-gggaaaataaataaagtcttt--gCTGGAGAGAGT-GAGTTGGATAGCCGGACTTCAATGTCTGTGGATTGAGTTTGTGACTTAAAAATGAAACCAGTCTATTGCTTGCATGGCTTT--TCTCAAAATAC-TGTTATTCC--ATTACCTGTCTCTTACTCCAA-GAGT-AGTCA-CATTC-TTGTTT---CTGGTTATTTTAATTCCTGGTGGTATTTTTATGTGATTAATGAGATACTACTTGTTA--ATTTGATAATATTCTAGAAACCCGGTAAGTACTATGTACCTTGTCTTAAGTTTTGGTTACTTAATTGGTAAAA-TTATAGCATGCACCATTGATTTACCtaattcaaaatagattattttattgtttgacatttgtcttgtgtttttctttaaaatgttatctttgtggagtaaaca-tttttttgtatgcTGTTTAGCATCTTCATCAGATTAGTTCAGGGTGTTGCTGAATATGGTTATTTGGAAGTAAAATGCTTTAGTTTTAGTTATATAGCTTTTAATAAGATactat-tttctatataatttatcAGATACTTTAGGCATTTTAATTTGCAAATTTAGGACAATTTGCTTTAACATTTC-TT------CATATTTGTCCATTGGATGTAATTTCCACAAA-TATTCA-TTTCCC-TAAGTAAAAACTGAAA-CCCAAACCCACAACTAATGG-TCACT-GAAGAAGGAGTGATTAAATGCTAACACAAATAatggtatttgtattttaatgt----t----aCCAACTCTCCACAGTTTAAAGTTTATGCATTTATCGATTGCTTATGTTTCTCATCACATTCTTT-GGCCTACTGGTTTT-GGTCGTTTATAGCTATAGAATATAGAATT-CCTTAT-GGTTATCCA-TTTCTCCTTTTAAGTAGAATGATAGttgttagaagaaaaataatccccCAGTACTTTCTTCT----AGTGTTAATCCTTAAAGTGTGATTgacctttatttactttttggtgCGGTAATTGCAGTTCATGAGTCAATGTTGATGTCA-TATAAAccttaattttta--atgtttcattgtaGTGATGTCTCAGccagaattaaatatttaatgtaaattgtAGCAGCAAACATTTAAGTTATTTAAGTTATACTTAAATGTTTAAGTCACTG-TTAGTGATAAGCTTATTTTGCCTT-CCTTGAAGCAACTTGTCCTAAATTTCCATAcgtttgcatttgtttttgctGTTCTAAAATT-CCTTAGTTGCTGGCTTTGACCTTTTATGTTGCTGAGTTTTACACATCTATTTTCTCAACTGCCATATCCTAGGGGGCTTGGAGTACCCATAATACAGTGAGCCCACCTTCCTGGTCCCCAGACATTTCAGAAGGTCGGGAAATTTTTAAACCCAGGCAGCTTCCTGGCAGTGCCATTTGGAGCATCAAAGTGgtaaataaaattgcatttacATTCATATATCATTTCTGTCTGA-TTGTTTTGCCCTACTGGA--TGTTA-------------------------------------------AGAcactttttaaatctaaa-aattttaatgtaaagaaataata----tgcatttaaaaatc--------------------------------------------aagtatacatttttaat-accTCTTTTTATTGTTAATTCCTTT-TGTTGTGATTACTACTGTTTTTATGAGGGAGAAGTCCTTGACATGTAGACCAAAAGGT-AATTACGGACA-TTTTCATTCACGAT-ATCATAAAACTTTGTTGc-ttagaaaaaagcaaaag-aaaaactccATTAATGTA-TTATGTTCTCATGGAGAAGAAATACCAAAATTGTGG-CAGATTTCATTGTCTGTGGTTAAT-ACC-TTAAAGTGACAGGGCTTTTC-----CCCCCATGCCATTGGTT-GGTGACT-CTGTCAGTCC-TTGA-----------AG-----TAAGTAG---TGTGATgca-ttttgaagagaaaaaaaa-ttaatttggaaaagtattaa----ctcaaaagttgaAATACCTCATTGACTAGAGGTGacaa-tttttcttcatcttccataTTTAAT---ATTCTGGAATATGGCTGTTTAATTTAGACTCATCAAGGATTTT-AAGGAATTGTagattatac-tttattttctttcatgactggaagaacaattc-------------tttttttttt--taacttcctta-cCTCCCCC-GATATCATCC-AAGATAT i papAnu2.chr3 C 0 C 0 s chlSab2.chr21 6815188 2469 - 127223203 T-GGAAGTCAAATACAGGAAGATCATGTACAGGAGATGAAGAAAGATTAGTGACG-AAGTCAGTGAAACATCCACAGGTGTGCTGCTGC--CAAATGCAGCAGAATAGTATGCC--AGATATTAGGAGCATGAGTAAAATGAGAAAAGAGAAATGGCTTTTGACAATACAGAGGTTACCTA-AGACCCTGG---ACTAATAGTAGGGAA--GAAGACATAGGTATAGATT-CAAGTTGATTTGAGATTATGAAAGTGAGGTAGTTGACCTGCAGTGGTTGCTGCTTAGTGAAATCAGCATAGTGATTACGTGAGCTAGGTTAGAGATTTGATGGGTAAGAAAGAATACCCAAGGGTGATCCTGGA-GGGAAAATAAATAAAGTGTTT--GCTGGAGAGAAT-GGGTTGGATAGCTGGACTTCAATGTCTGTGGATTGAGTTTGTGACTTAAAAATGAAACCAGTCTATTGCTTGCATGGCTTT--TCTCAAGGTAC-TGTTATTCC--ATTACCTGTCTCTTACTCCAA-GAGT-AGTCA-CATTC-TTGTTT---CTGGTTATTTTAATTCCTGGTGGTATTTTTATGTGATTAATGAGATACTACTTGTTA--ATTTGATAATATTCTAGAAACCCGGTAAGTACTATGTACCTTGTCTTAAGTTTTGGTTACTTAATTGGTAAAA-TTATAGCATGCACCACTGATTTACCTATTTCAAAATAGATTA-TTTATTGTTTGACATTTGTCTTGTGTTTTTCTTTAAAATGTTATCTTTGTGGAGTAAACA-TTTTTTTGTATGCTGTTTAGCATCTTCATCAGATTAGTTCAGGGTGTTGCTGAATGTGGTTATTTGGAAGTAAAATTCTTTAGTTTTAGTTATATAGCTTTTAATAAGATACTAT-TTTCTATATAATTTATCAGATACTTTAGGCATTTTAATTTGCAAATTTAGGACAATTTGCTCTAACCTTTC-TT------CATATTTGTCCATTGGATGTAATTTCCACAAA-TATTCA-TTTCCC-TAAGTAAAAACTGAAA-CCCAAACCCACAACTAATGG-TCACT-GAAGAAGGAGTGATTAAATGCTAATACAAATAATGGTATTTGTATTTTAATGT----T----ACCAACTCTCCACAGTTTAAAGTTTATGCATTTATTGATTGCTTATGTTTCTCATCGCATTCTTT-GGCCTACTGGTTTT-GGTCATTTATTGCTATAGAATGTAGAATT-CCTTAT-GGTTATCCA-TTTCTCCTTTTAAGTAGAATGATAGTTGTTAGAAGAAAAATAATCCCCCAGTACTTTCTTCT----AGTGTTAATCCTTAAAGTGTGATTGACCTTTATTTACTTTTTGGTGCGGTAATTGCAGTTCATGAGTCAATGTTGATGTCA-TATAAACCTTAATTTTTA--ATGTTTCATTGTAGTGATGTCTCAGCCAGAATAAAATATTTAATGTAAATTGTAGCAGCAAACATTTAAGTTATTTAAGTTATACTTAAATGTTGAAGTCACTG-TTAGTGATAAGCTTATTTTGCCTT-CCTTGAAGCAATTTGTCCTAAATTTCCATACGTTTGCATTTGTTTTTGCTGTTCTAAAATT-CCTTAGTTGCTGGCTTTGACCTTTTATGTTGCTGAGTTTTACACATCTATTTTCTCAACTGCCATATCCTAGGGGGCTTGGAGTACCCATAATACAGTGAGCCCACCTTCCTGGTCCCCAGACATTTCAGAAGGTCGGGAAATTTTTAAACCCAGGCAGCTTCCTGGCAGTGCCATTTGGAGCATCAAAGTGGTAAATAAAATTGCATTTACATTCATATATCATTTCTGTCTGA-TTGTTTTGCCCTACTGGA--TGTTAAGAATTAAATCTTTCTTTTCTAGATTG-------AGCTTCCAGAGACACTTTTTAAATCTAAA-AATTTTAATGTAAAGAAATAATA----TGCATTTGAAAATC--------------------------------------------AAGTATACATTTTTAAT-ACCTCTTTTTATGGTTAATTCCTTT-TGTTGTGATTACTACTGTTTTTATGAGGGAGGAGTCCTTGACATGTAGACCAAAAGGT-AATTACGGACA-TTTTCATTCACGAT-ATCATAAAACTTTGTTGC-TTAGAAAAAAGCAAAAG-AAAAACTCCATTAATTTA-TTATGTTCTCATGTAGAAGAAATACCAAAATTGTGG-CAGATTTCATTGTCTATGGTTAAT-ACC-TTAAAGTGACAGGGCTTTTC-----CCCCCATGACATTGGTT-GGTGACT-CTGTCAGTCC-TTGA-----------AG-----TAAGTAG---TGTGATGCA-TTTTGAAGAGAAAAAAAA-TTAATTTGGAGAAGTATTAA----TTCAAAAGTTAAAATACTTCATTGACTAGAGGTGACAA-TTTTTCTTCATCTTCTATATTTAAT---ATTCTGGAATATGGCTGTTTAATTTAGACTCATCAAAGATTTT-AAGGAATTCTAGATTATAC-TTTATTTTCTTTCATGACTGGAAGAACAATTT------------TTTTTTTTTTT--TAACCTCCCTA-CCTCCCCC-GATATCATCC-AAGATAT i chlSab2.chr21 C 0 I 11 s calJac3.chr8 94477699 2429 + 128169293 T-GAAAATCAGATAGAGGAAGAACATGTATAGGAGATG-----AGTTTAGTGAGG-AGGTCAGTGAAACATCCATAGATGTGCTGCTGC--CAAATCCAGCAGAGTAGTATGTC--AGATGTTAGGAGTGTGAGTAAAATGAAAAAAGAGAAAGAGCTTCTGACAATGCAGAGGTTTCCTA-AGACCCTGGACtagtaacagtagggaa--gaagacataggtacagatt-taagttgatttgaaattatggaagtggggtagttgacctgcagtgcttgctgctcagtgaaatcagcatagtg-ttacctgagctaggttagaggtttgatgggtaagaaagaaaacgtaagcgtaatcttgga-gtgaa---aaataaagtgttt--tctggagagaat-gagttggattgctggacttcaatgtgtatgggttgagcttatgacttaaaagtgaaaccggtctattgcttgcatggtttt--tctatagATAA-TGTTGCTCT--GTTACCTCTCTGTTACCCCAA-GAGT-AGTCA-CATTT-TTATTT---CTGGTTATTGTAATTCCTGGTAGTATTTTTATGTGATTAATGAGTTATTACTTGTTACTATTTGATAATAGTCTAGAAACCTGGTAAGTACTATGTACCTTGCCTT----------------ACTGGTAAAA-TTATAGCATGCACCATTGAATTACCTAATTCAGAATAGGTT-TTTTATTGTTTGACATTTGTTTTGTGTTTTTCTTTAAAATATTATCTTTGTGGAGTAAACATTTTTTCTTTATGCTGTTTAGCATCTTCATCAGATTAGTTTAGGGTATTGCTGAATGTGGTTATTTGGAAGTAAAATACTTTA-----AGttatatagattttaataagata-tat-tttttatataatttatCAGGTACTGTAGGCATTTTAATTTGCAAATTTAGGACAATTTGCTTTAATGTTTC-TT------CACTTCTGTCCATTGGATATCATTTCCATAAAGTATTCG-TTCCCCGTAAATAGAAACCGAAA-CCCAAAACCACAAATGATAG-TCACT-GAAGGAGGAGTGATTAAATGTTAAGAT-TATAACGGTATTTGTATTTTAATGTAACAA----ACCGACTCTCCACAGTTTAAAGTTTATGCATTTATCAATTGCTTATGTTTCTCATTGCATTCTTT-GGCCTACTGGTTTT-GGTTGTTTATAGTTATAGTACATAGAATA-CCTTAT-TGTTATCCATTTTTTTTTTTTAAGTAGAGCGATAGTTGTTAGAAGAAAAATAATCCCTTAATACTTTCTTCT----AGTGTTGATTCTTAAAGTGTGATTGACTTTTATTTACTATTTGGTGCAGTAATTGCAGTTCATGAGTCAATGTTGATGTCA-TAGAAATCTTAATTTTTA--ATGTTTCATTGTAATGATGTCTCAGCTGG-----AATATTTAATGTAAATTGTAGCAGCAAACGTT-------------------TTAAATGTTTAAGTCACTG-TTAGTGATAAGGTTATTTTGCCTT-CCTTGAAGCAATTTGTCCTAAATTTCCATACTTTTACATTTGTTTTTGCTATTCTAAAATT-CCTTAGTTGCTGGCTTTGACTTTTTATGTTGCTGAGTTTTACACATCTATTTTCTCAACTGCCATATCCTAGGGGGCTTGGAGTACCCATAATACAGTGAGCCCACCTTCCTGGTCCCCAGACATTTCAGAAGGTCGGGAAATTTTTAAACCCAGGCAGCTTCCTGGCAGTGCCATTTGGAGCATCAAAGTGGTAAATAAAATTGCATTTACATTCATATATCATTTCTTTCTGATTTGTTTTGCCCTACTGGA--TGTTAAGAATTAAATCTTTCTTTTCTAGATTG-------AGCTTTCAGAGACACTTGTAAAATCTAAA-ACTTTTAATGTAAAGAAACAATATGCTTGCATTTAAAAATC--------------------------------------------AAGTACACG-TTTTAAT-ACCTCTTTTTATGGTTAATTCCTTT-TGTTGTGATTACTGCTGTTTTTATGAGGAAGAAGTCCTTGACATGTAGACCAAAAGGT-AATTAAGGACC-TTTTCATTCATGAT-GTCATAAAACTTTGTTGC-TTAGAAAAGAGCGAAAG-AAAAACTTCGTTAATTTA-TTATGTTCTCTTGGAGAAGAAATACCAAAATTGTGG-CAGATTTCATTGTCTGTGGTTAAT-ACC-TTAAAATGACAGGGCTTCCCCCCCTCCCCCATCACATTGGTT-GACGGCT-TTGCTAGTCC-TTGA-----------AGTAAGTTGGGTAGTAATATGATACA-TTTTGAAGAG-AAAAAGA-TT-ATTTGAAAAAGTATTAA----CCCAAAAGTTAAAGTGCTTTATTGGTTAGAGATGACAGTTTTTTTTTCATCTTCTATATTTAAT---CTTCTGGAATATGGCTGTTTA-----GACTAATCAAGGATTTT-AAGGAATTCTAGAGAACAC-TTTATTTTCTTTCATGACTGGAAGAAAAATTT----------------------T--TTACCTCCCTA-CCTCCCCCTGGTATCATCTAAAGATAT i calJac3.chr8 I 2252 C 0 s canFam3.chr16 43579441 2350 - 59632846 t-ggaggtcaggtggaggaagaacgtgctcgggggg-acagaaaggtcagcagggcaggGCAGGGCCACATTCACGGGTTTGTTGCCGCATTGAACCCAACGGAACTGGATGT---AGGTGTTGACAGTGTGAGTACAGTGAGAATAGAAAAATGAC-TCTGGCAGCATAGAGGTTTCCCAGAGAACCTGGAT-----GCAGCTGTACACTGTACACTCAGGTATAGATA-CAGGTTGATCTGATAGTAGTAACACGGGGTAATTCACCTG-------------TTAGTAAAATTAGCATAGCCATTACCTGAG----------------------------------------------------------------------TTT--------GAGGGG-AGGTT--------------------------------------------AATTGAAACCAGTCTCTTCCTTGTGTGGTTTT--TCTCAAAATAA-TGTTACTGC--ATTAATTATCTGATCTCCAGA-GGGC-TGTCA-AACTC-TTACTTTGGTTGATTATTTAAATTGCTGGTGGTAGTTTTGTGTGATTAATAGGCTACTATTTGTTA--GTGTGATAATATTCTAGAAACCTGGTAAGTACTGTG-----TTTTTTAAGTTTGGGTCATTTAATTGATAAAAGTTATAGCATATGTTCTGGAATTACCTAATTCAAAATAGGCTC-TTTATTGTTTGACATTTGTTTTGTGTTTTTCTTTAAAATGTTATCTTTGTGGTGTAGACA-TTTTTATTTATGCTGCGTAGCGTCCTCATCAGATTAGTTCAAGTTATTGCTGAATGTGGTTATTAAGAAGTAAAATGTCTTACTTTCA-TTTTAACTACTTTAATAAGATACTAT-TTCTTGTATAAATAACCAAGTATCTCAGGCATTTTAATTTGCAAATTTAGGACAATTTGCTTTAATATTTT-TCATTGTACAAATTAGTCCCATGGATGTAATCTAAGGATAATA-----GTTCCC-TAAATAAAAATAAAAA--CCAAAATCACAACTAGTGG-TCACTAGAAGGAAGAGTAGTTAAATGCTAGGAT-TATAGCTGATATTGCATCTTAAGAT----TGAACACTAACTTTCCATAATTTAAAGTGAATATTTCTATCGATTGCTCAAAT-----------TTCCTT-TGTCTCCTGGTTT--GGTTATTTTTAGCAATAG------GTGTA-CCTAAC---------A-TT----CTTAAAGATAGAATGATAGTTGTTAGAAG-AAAACAACCCCCAAGTAGTTTCTTATATAAAGTGTTAATTCTTAGAATTTAATTGACTTTTATTTATATTTTGTTTCTATAATTGCCATTCATGAGTCAGTGTTGATGTCCTTATAAACCCTAATTCCTAATATGTTTCATTGTACTAATGTTTCAATCCGAATAAAATACGTAATGTAAATTGTAGCTGCAAACATTTAAGTA---------------------TAAAATCATTG-TAAGTGTAAAGCTTATTTTCCCTA-CCTTGAAGCAATTTGTCCTAAATTTCCATACGTCTGCATTTG-TTTTGCTGTTCTGAAATT-CCTCAGTTGCTGGCTTTGACCTTTTACGTTGCCGAGTTTTATACATCTATTTTCTCACCTGCCATATCCTAGGGGGCTTGGAGTACCCATAATACAGTGAGCCCACCTTCCTGGTCCCCAGACATTTCAGAAGGTCGGGAAATTTTTAAACCCAGGCAGCTTCCTGGCAGTGCCATTTGGAGCATCAAAGTGGTAAATAAAATTGCATTTACATTCATATATCATTTCTTTCTGGTTGGTTTTGTCCGAGTAGATGTGTTAAGAATTGAACCATTCTTTTCTAGATAAGTAGTGCAGATTCCAGAGCCACttttttaatataaa-aattttaGTATGAAGAATCAACATGCTTGCACTTAAAAATCTGGATTAGGAGGAAATTAAATTGCAATTTTACATGACTGATTTTAAGAGTGAATTTTTAGTAACTTCTTTTTATGGTT--TTCTTTTATGTTGTAATTA---GCGTTTCTATGGAGGA-AAACCCTTGTTGCATAGGCTATAAAGT-ATTTTAGGACT-TGCTCATTCTTGATAATCATAAAATTTTGTTGC-TTAGAAAAGAACAAAAG--AAAACTACA-TAATCTA-TTATATGCTAATGAAGAAGAAATACCAGAATCG----CAGATTTCAATGCCCGT-GTTAATAACC-TCACAATTATAGGGCCTCTC----TCTCTCATGTCATTGATG-GAGGATT-CTGCTAGTTC-TTGAATACATAACTCAGTGAGTTATGTAG---TCTGATGCA-TTTTAGAGGG-TAGAAAA-TTAATGTG-AAAAGTATTAATCATCTGAAAAGTTAAAATATTTGACTACCTAGAGAAGAGAA--TTTTCTTCCTCTTCTATATTTAATATGATTTTGAAATAAGGCTGTTTATTTTAGACTTATCAAGGGTTTCAAAGGAGTTCTAGATTCTAC-TTTCTTAT-TTCTATCACTATTAGAACTATTT---------------------TT-----------CA-GTTCACTCTGATATCATGC-AAGGTGT i canFam3.chr16 C 0 C 0 a score=28128.000000 s hg38.chr1_KI270765v1_alt 172538 11 + 185285 TGAGGTATAAA s panTro4.chr2A 22207501 11 - 113622374 TGAGGTATAAA i panTro4.chr2A C 0 C 0 s ponAbe2.chr7 7579283 11 - 157549271 TGAGGTATAAA i ponAbe2.chr7 C 0 C 0 s nomLeu3.chr13 7278267 11 - 110113093 TGAGGTAGAAA i nomLeu3.chr13 C 0 C 0 s rheMac3.chr3 7187674 11 - 198365852 TGAGGTATAAA i rheMac3.chr3 C 0 I 5 s macFas5.chr3 7353172 11 - 192294377 TGAGGTATAAA i macFas5.chr3 C 0 I 5 s papAnu2.chr3 6917817 11 - 180432695 Tgaggtataaa i papAnu2.chr3 C 0 I 5 s calJac3.chr8 94480128 11 + 128169293 TGAGGTATAAA i calJac3.chr8 C 0 I 5 s canFam3.chr16 43581791 10 - 59632846 TGAAA-ATAGA i canFam3.chr16 C 0 C 0 e chlSab2.chr21 6817657 11 - 127223203 I a score=452721.000000 s hg38.chr1_KI270765v1_alt 172549 163 + 185285 --------------------TATACCTC----ATTTGACAGTTTGATAATATAGACCACCAATTTTTACTTACCTTTTTT-CTGGGTCAGCATTTCATGTTTGAGAAAATAAATTGAGAGATTACTGTAGTCTTGATTTTTAATCACTGACTTAATTTTTCAAAAATCTTTTATACCAGTTTAATAAC s panTro4.chr2A 22207512 163 - 113622374 --------------------TATACCTC----ATTTGACAGTTTGATAATATAGACCACCAATTTTTACTTACCTTTTTT-CTGGGTCAGCATTTCATGTTTGAGAAAATAAATTGAGAGATTACTGTAGTCTTGATTTTTAATCACTGACTTAATTTTTCAAAAATCTTTTATACCAATTTAATAAC i panTro4.chr2A C 0 C 0 s ponAbe2.chr7 7579294 163 - 157549271 --------------------TATACCTC----ATTTGACAGTTTAATAATATAGACCACCAATTTTCACTTACTTTTTTT-CTGGGTCAGCATTTCATGTTCAAGAAAATAAATTGAGAGATTACTGTAGTCTTGATTTTTAATCACTGACTTAATTTTTCAAAAATCTTTTATACCGGTTTAAAAAC i ponAbe2.chr7 C 0 C 0 s nomLeu3.chr13 7278278 157 - 110113093 --------------------TATACCTC----ATTTGACAGTTTGATAATATAGACCACCAATTTTCACTTATTTTTTTT-CTGGGTCAGCATTTGACGTTCGAGAAAATAAATTGAGAGATTACTGTAGTCTTGATTTTTAATCACTGACTTAATTTTTCAAAAATCTTTTATACCAATTT------ i nomLeu3.chr13 C 0 C 0 s rheMac3.chr3 7187690 162 - 198365852 --------------------TAAGAGTC----ATTTGACAGTTTTGTAATATAGACCACCAGTTTTCACTTTTTGTTTTT-CTGGGTCAGCATTTGATGTTGGAGAAAAT-AATTGAGAGATTACTGTAGTATTGGTTTTTAATCACTGACTTAATTTTTCAAAAATCTTTAATACCAATTTAAAAAC i rheMac3.chr3 I 5 C 0 s macFas5.chr3 7353188 162 - 192294377 --------------------TAAGAGTC----ATTTGACAGTTTTGTAATATAGACCACCAGTTTTCACTTTTTGTTTTT-CTGGGTCAGCATTTGATGTTGGAGAAAAT-AATTGAGAGATTACTGTAGTATTGGTTTTTAATCACTGACTTAATTTTTCAAAAATCTTTAATACCAATTTAAAAAC i macFas5.chr3 I 5 C 0 s papAnu2.chr3 6917833 163 - 180432695 --------------------taagagtc----ATTTGACAGTTTTGTAATATAGACCACcagttttcactttttgttttt-ctgggtcaGCATTTGATGTTGGAGAAAATAAATTGAGAGATTACTGTAGTATTGGTTTTTAATCACtgacttaatttttcaaaaatctttaataccaatttaaaaac i papAnu2.chr3 I 5 C 0 s chlSab2.chr21 6817668 163 - 127223203 --------------------TAAGAGTC----ATTTCACAGTTTTGTAATATAGACCACCAGTTTTCACTTTTTGTTTTT-CTGGGTCAACGTTTGATGTTGGAGAAAATAAATTGAGAGATTACTGTAGTATTGATTTTTAATCACTGACTTAATTTTTCAAAAATCTTTAATACCAATTTAAAAAC i chlSab2.chr21 I 11 C 0 s calJac3.chr8 94480144 162 + 128169293 --------------------TAAGAGTCATTTATTTGACAGTTTTGTAACATAGACCAGCAATTTTCACTAATTTTTTTTCCTGGGTCAGCATTTGATGTTGGAGAAAATAAATTGAGAGATTATTATAGTCTTGATTTTTAAGCACTGACTTAATTTTTCAAAAATCTTTTA------TTTAAAAAC i calJac3.chr8 I 5 C 0 s canFam3.chr16 43581801 159 - 59632846 GACAGTTGCTTTAAGAGCATAAAAGATG----TTTTGATAAATTTGTAGCAAATACCACAACTTTTCACTTACTCTCAT--CTGTGT---CTTTAGATGCTGGA-AAAATAGAT-----------TATAGCCCTGA--TTTAATAATTGACTTAA-TTTAAAAAATTCTTTTATAC-----TTACAAC i canFam3.chr16 C 0 C 0 a score=870645.000000 s hg38.chr1_KI270765v1_alt 172712 324 + 185285 AAAACAAACTCggccgggcgcagtggctcacgcctgtaatcccagcactttgggaggctgagg-gggcag-atcaccagaggt-caggagttcgaggccaacctggccaaagtggtgaaaccccgtctctactaaaaatac-aaagagatttagccgtgcgtggtggcatgtgcctgtaatcccagctgctagggaggctgaggcaggagaattgcttgaacccaggagatggaggttgcagtgagccaagatcaca----tcattgcactccagcctgggcaaagaagcgagactccatctcaaaaacaaacaaacaaac-aaaaaa----------------CCCAA s panTro4.chr2A 22207675 340 - 113622374 AAAACAAACTCAgctgggcacagtggctcatgcctgtaatcccagcactttgggaggctgagg-gggcag-atcactggaggt-caggagttcgaggccaacctggccaacgtggtgaaaccccgtctctactaaaaatac-aaagagatttagccgtgcgtggtggcatgtgcctgtaatcccagctgctagggaggctgaggcaggagaattgcttgaacccaggagatggaggttgcagtgagccaagatcaca----ccattgcactccagcctgggcaaagaagcgagactccacctcaaaaacaaacaaacaaac-aaacaaacaaataaacaaaAACCCCAA i panTro4.chr2A C 0 C 0 s ponAbe2.chr7 7579457 316 - 157549271 AAAACAAACTc----gggcgcagtggctcacgcttgtaatcccagcactttgggagtctgagg-gggcagtatcacttgaggt-caggagttcgaggccaacctggccaacatggtgaaaccccgtctctactaaaaatac-aaagaaatttagccgggcctggtggcatgtgcctgtaatcccagctgctagggaggctgaggcagaagaattgcttgaacccaggagacggaggttgcagtgagccaagatcgca----ccattgcattccagcctgggcaaagaagtgagactccatcttcaaa------aaacaaac-aaacaa---------------cccaaa i ponAbe2.chr7 C 0 C 0 s nomLeu3.chr13 7278435 324 - 110113093 AAAACAAACTCggccgggcgccatggctcacgcctgtaatcccagcactttgggaggctgaggtgggcgg-atcacttgaggt-caggagtttgaggccaacctggccaacatggtgaaaccctgtctctactaaaaatac-aaagaaatttagccgggtgtggtggcgtgtgcctgtattcccagctgctagggaggctgaggcaggagcattgcttgaacccaggagacggaggttgcagtgagccaagatcaca----ccattgcactct-gcctgggcgaagaagcgagactccatctcaaaaacaaacaaacaaac-aaaaaa----------------CCCAA i nomLeu3.chr13 C 0 C 0 s rheMac3.chr3 7187852 317 - 198365852 AAAACAAACTTggccaggcgccatggctcacgcctgtaatcccaacattttgggaggctgaggtgggcgg-atcatttgagat-taggagttcgagaccaacctggccaacatggtgaaaccctgtctctactaaaaatac-aaacaaatttagccaggcatggtggcatgtgcctgtaatcctagctactagggaggctgaggcaggagagttgcttgaacccaggaggcggaggttgcagtgagccaagatcgca----ccattgcactccatcctgggcgtagaagcgagactccatctcaa--------aaacaaac-aaaCAA----------------CCCAA i rheMac3.chr3 C 0 C 0 s macFas5.chr3 7353350 317 - 192294377 AAAACAAACTTggccaggcgccatggctcacgcctgtaatcccaacattttgggaggctgaggtgggcgg-atcacttgagat-caggagttcgagaccaacctggccaacatggtgaaaccctgtctctactaaaaatac-aaacaaatttagccaggcatggtggcatgtgcctgtaatcctagctactagggaggctgaggcaggagagttgcttgaacccaggaggtggaggttgcagtgagccaagatcgca----ccattgcactccatcctgggcgtagaagcgagactccatctcaa--------aaacaaac-aaaCAA----------------CCCAA i macFas5.chr3 C 0 C 0 s papAnu2.chr3 6917996 317 - 180432695 aaaacaaacttggccaggcgccatggctcacgcctgtaatcccaacactttgggaggctgaggtgggcgg-atcacttgagat-caggagttcgagaccaacctggccaacatggtgaaaccccgtctctactaaaaatac-aaacaaatttagccaggcatggtggcatgtgcctgtaatcctagctactagggaggctgaggcaggagaattgcttgaacccaggaggcagaagttgcagtgagccaagatcgca----ccattgcactccatcctgggcgtagaagcgagactccatctcaa--------aaacaaac-aaacaa----------------cccaa i papAnu2.chr3 C 0 C 0 s chlSab2.chr21 6817831 318 - 127223203 AAAACAAACTTggccaggtgccatggctcacgcctgtaatcccaacactttgggaggctgaggcgggcgg-atcacttgagat-caggagttcgagaccaacctggccgacatggtaaaaccccgtctctactaaaaatac-aaacaaatttagccaggcatggtggcatgtgcctgtaatcccagctactagggaggctgaggcaggagaattgcttgaacccaggaggcggaggttgcagtgagccaaaatcgca----ccattgcactccatcctgggcgtagaagcgagactccgtctcaa--------aaacaaacaaaaaaa----------------CCCCA i chlSab2.chr21 C 0 C 0 s calJac3.chr8 94480306 325 + 128169293 GAAACAAACTGggccagacacagtggcttatgcctgtaattccagcactttgtgaggctgaggccagcag-atcacttgaggtccaggagttcaagaccaacctggttgacatggtgaaaccctgtctctactaaaaatacaaaacaaaattagtcgggcttggtggcacatgcctgtaatcccagctactggggaggctgaggcaggagaattgcttgaacctgggaggcagaggttgcagtgagctgagatcatggcatgcattgcactcccgcccgggcgaagaagtgagacttcgtttcaaaaaacca-aaataaac-aaaagg--------------------- i calJac3.chr8 C 0 C 0 e canFam3.chr16 43581960 0 - 59632846 C a score=1044728.000000 s hg38.chr1_KI270765v1_alt 173036 357 + 185285 AAAACTAACCTG-----ACCCCATCTATCTGTTGT--GCAAAGAAGC--TGATGCAC-TTCTCAA----AAGGGATCTC-AAGGAG-AGCAGGG-TAAGAGAAGA---CAGGAGT-GGCAGTTTGAAAC---TGGGAGCT-GGCTGT--ATTTATT-ACATCCAAAGGG---AAAAAAGCCATTCCTCCCATTCCTTTTGTTCAT-GTGTTTCTATTTTATG-CTTACAGTATCATCATAAATTTTTGACTTGG-AAACCATTCTGCTAAATAGG-GAATCAGTT---TATTTC-AAACTATGAT--AAGGGACATCAGTTGAAGATATGACATATTATTTAACTTATGGTGAGGGAAACACCTAAGTATTTTCCTGAGCA-TCTGGATAATTTTAAAT s panTro4.chr2A 22208015 357 - 113622374 AAAACTAACCTG-----ACCCCATCTATCTGTTGT--GCAAAGAAGC--TGATGCAC-TTCTCAA----AAGGGATCTC-AAGGAG-AGCAGGG-TAAGAGAAGA---CAGGAGT-GGCAGTTTGAAAC---TGGGAGCT-GGCTGT--ATTTATT-ACATCCAAAGGG---AAAAAAGCCATTCCTCCCATTCCTTTTGTTCAT-GTGTTTCTATTTTATG-CTTACAGTATCATCATAAATTTTTGATTTGG-AAACCATTCTGCTAAATAGG-GAATAAGTT---CATTTC-AAACTATGAT--AAGGGACATCAGTTGAAGATATGACATATTATTTAACTTATGGTGAGGGAAACACCTAAGTATTTTCTTGAGCA-TCTGGATAATTTTAAAT i panTro4.chr2A C 0 C 0 s ponAbe2.chr7 7579773 383 - 157549271 aaaaCTAACCTG-----ACCCCATCCATCTGTTGTTGTCAAAGAAGCTGTGATGCACATTCTCAA----AAGGGATCTCTAAGGAGAAGCAGGGTTAAGAGAAAGAATAAGGAGTGGGCAGTTTGGAACACTGGGGAGCTGGGCTGTTATTTTATTAACATCCAAAGGGGAAAAAAAGGCCATTCCTCCCGTCCCTTTTGTTCATGGTGTATCTATTTTATGTCTTACAGTATCACCATAAATTTTTGACTTGGTAAACCATTCTGCTAAATAGG-GAATAAGTT---CATTTCAAAACTGTGAT--AAGGGACATCAGCTGAAGATATGACATATTATTTAACTTACTGTGAGGGAAACATCTAAGTATTTTCCTGAGCA-TCTGGATAATTTTAAAT i ponAbe2.chr7 C 0 C 0 s nomLeu3.chr13 7278759 357 - 110113093 AAAACTAACCTG-----ACCCCATCCATCTGTTGT--TCAAAGAAGC--GGATGCAC-TTCTCAA----AAGGGATCTC-AAGGAG-AGCAGGG-TAAGAGAAGA---CAGGAGT-GGCAGTTTGAAAC---TTGAAGCT-GGCTGT--ATTTATT-ACATCCAAAGGG---AAAAAAGCCATTCCTCCCGTTCCTTTTGTTCAT-GTGTATCTATTTTATG-CTTACAGTATCACCATAAATTTTTGACTTGG-AAACCATTCTGCTAAATAGG-GAATAAGTT---CATTTC-AAACTATGAT--AAGGGACATCAGTTGAAAATACGACATACTATTTAACTTATTGTGAGGGAAACATCTAAGTATTTTCCTGAGCA-TCTGGATAATTTTAAAT i nomLeu3.chr13 C 0 C 0 s rheMac3.chr3 7188169 354 - 198365852 AAAACTAAGCTG-----ATCCCATACATCTGTTGT--TGAAAGAAGC--TGATGCAT-CTCTC------AAGGGATCTC-AAGGAG-AGCAGGT-TAAGAGAAGA---CAGGAGT-GGCAGTTTGAAAC---TGGAAGCT-GGCTAT--ATTTATT-ACATCCAAAGGG---AAAAAAACCATTCCTCCCGTTCCTTTTATTCAT-GTGTATCTATTTTATG-CTTACAGTATCACCATAAAGTTTT-ACTTGG-AAATCATTCTGCTAAATAGG-GAATAAGTT---CATTTC-AAACTATGAT--GAGGGACATCAGTTGAAGATATGACATATTATTTAACTTGTTGGGAGGGAAACATCAAAGTATTTTCCTGAGCA-TCTGGATAATTTTAAAT i rheMac3.chr3 C 0 C 0 s macFas5.chr3 7353667 354 - 192294377 AAAACTAAGCTG-----ATCCCATACATCTGTTGT--TGAAAGAAGC--TGATGCAT-CTCTC------AAGGGATCTC-AAGGAG-AGCAGGT-TAAGAGAAGA---CAGGAGT-GGCAGTTTGAAAC---TGGAAGCT-GGCTGT--ATTTATT-ACATCCAAAGGG---AAAAAAACCATTCCTCCCGTTCCTTTTATTCAT-GTGTATCTATTTTATG-CTTACAGTATCACCATAAAGTTTT-ACTTGG-AAATCATTCTGCTAAATAGG-GAATAAGTT---CATTTC-AAACTATGAT--AAGGGACATCAGTTGAAGATATGACATATTATTTAACTTGTTGGGAGGGAAACATCAAAGTATTTTCCTGAGCA-TCTGGATAATTTTAAAT i macFas5.chr3 C 0 C 0 s papAnu2.chr3 6918313 354 - 180432695 aaaacTAAGCTG-----ATCCCATACATCTGTTGT--TGAAAGAAGC--TGATGCAT-CTCTC------AAGGGAGCTC-AAGGAG-AGCAGGT-TAAGAGAAGA---CAGGAGT-GGCAGTTTGAAAC---TGGAAGCT-GGCTGT--ATTTATT-Acatccaaaggg---aaaaaaaccatTCCTCCCGTTCCTTTTATTCAT-GTGTATCTATTTTATG-CTTACAGTATCACCATAAAGTTTT-ACTTGG-AAATCATTCTGCTAAATAGG-GAATAAGTT---CATTTC-AAACTATGAT--AAGGGACATCAGTTGAAGATATGACATATTATTTAACTTGTTGGGAGGGAAACATCAAAGTATTTTCCTGAGCA-Tctggataattttaaat i papAnu2.chr3 C 0 C 0 s chlSab2.chr21 6818149 354 - 127223203 AAAACTAAGCTG-----ATCCCATACATCTGTTGT--TGAAAGAAAC--TGATGCAT-CTCTC------AAGGGATCTC-AAGGAG-AACAGGT-TAAGAgaaga---ctggagt-ggcagtttgaaac---tggaagct-ggCTGT--ATTTATT-ACATCCAAAGGG---GAAAAAACCATTCCTCCCGTTCCTTGTATTCAT-GTGTATCTATTTTATG-CTTACAGTATCACCATAAAGTTTT-ACTTGG-AAACCATTCTGCTAAATAGG-GAATAAGTT---CATTTC-AAACTATGAT--AAGGGACATCAGTTGAAGATATGACCTATTATTTAACTTGTTGGGAGGGAAACATCAAAGTATTTTACTGAGCA-TCTGGATAATTTTAAAT i chlSab2.chr21 C 0 C 0 s calJac3.chr8 94480631 355 + 128169293 -aaaCTAA-CTG-----ACCCTATCCATCTCTTGT--TCAGAGAAGC--CGATGCAC-CTCTCAGGGTCAGGGAATCTC-AAGGAG-AGCAGGC-TAAGAGAACA---CAGGAGT-GGCAGTTTGAAAC---TGGAAGCT-GGCTAT--ATTTATT-ATATCCAAGGGG----AAAAAACAATTTCTACGTTCCCTTTTGTTCAT-GTTTATCTATTTTATG-CTCACAATATCACCATAAATTTTTGACTTGG-AAATCATTCTGCTAAATAGG-AATTAAGTT---AATATC-AAACTATGAT--AAGGTACATCAGTTGAAT-TATGAC--ATTATTTAACTTGTTGCAGGGGAAAGATCAAAGTATTTTCCCGATCA-TCTGGATAATTTTAAAT i calJac3.chr8 C 0 I 323 s canFam3.chr16 43581960 330 - 59632846 AAAACTATCCAGTTCAACCCTCCCTTACCCCTTGT--TCAAAAAAGC--ATAGGAAC----TCGA----A----------AAGAAG-AGCAGTT-TAAGAGAACA----AGGAGA-GGCAATTTG---------------------T--AATTATT-AACACTGAAGGG---AAAAAAG--ATTACCCCCTTCCTTTCTGCTCAT-GTCCATCTGTTTTATG-CTCACACTATAACCATAAATTATCAACTTGG-AAACTGTTATGCTAAATAGGTAAACGAGTTCAGCATTTC-AAACTGCAATAGAAATGATGTCAGTTGAAAATGTGGCATATTATTTAACTTAT-----GGGAAAAATC--AGGATTTTCCGGAGTATTTTTAATAATTTTAGAT i canFam3.chr16 C 0 C 0 a score=802010.000000 s hg38.chr1_KI270765v1_alt 173393 264 + 185285 ACACATAAT-TCATCTACTTAGGTAGGTGCCAGGTTTTTTCAAGGAGTAATTAATTAGTACGAACAAGGGT-GAGGGGGCAGGGAACACCATACTCTGGTACTTAATGTCTGAAATTATCAGGGAATT----TAACACATTTTCCC-----ATAGGTTTA-TTTCTTGT-----GTAAGAAGTCAGATAAATTATTTCCATTTCAAGTATTTATTATTCAGATTATTTAAAGCAAAGCTTTCACAAAGCCTTTTGTCAGCTTTCCTGTAATCCTCAAATAA s panTro4.chr2A 22208372 264 - 113622374 ATACATAAT-TCATCTACTTAGGTAGGTGCCAGGTTTTTTCAAGGAGTAATTAATTAGTACGAACAAGGGT-GAGGGGGCAGGGAACACCATACTCTGGTACTTAATGTCTGAAATTATCAGGGAATT----TAACACATTTTCCC-----ATAGGTTTA-TTTCTTGT-----GTAAGAAGTCAGATAAATTATTTCCATTTCAAGTATTTATTATTCAGATTATTTAAAGCAAAGCTTTCACAAAGCCTTTTGTCAGCTTTCCTGTAATCCTCAAATAA i panTro4.chr2A C 0 C 0 s ponAbe2.chr7 7580156 264 - 157549271 ATACATAAT-TCATCTACTTAGGTAGGTGCCAGGTTTTTTCAAGGAGTGATTAATTAGTACAAACAAGGGT-GAGGGGGCAGGGAACACCATACTCTGGTACTTAATGTCTGAAATTATCAGGGAATT----TAACACATTTTCCC-----ATAGGTTTA-CTTCTTGT-----GTGAGAAGTCAGATAAATTATTTCCATTTCAAGTATTTATTATTCAGATTATTTAAAGCAAAGCTTTCACAAAGCCTTTTGTCAGCTTTCCTATAATCCTCAAATAA i ponAbe2.chr7 C 0 C 0 s nomLeu3.chr13 7279116 260 - 110113093 ATACAT-AT-TCATCTACT----TAGGTGCCAGGTTTTTTCAAGGAGTAATTAATTAGTACAAACAAGGGTGGGGGGGGCAGGGAACACCATACTCTGGTACTTAATGTCTGAAATTATCAGGGAATT----TAACACATTTTCCC-----ATAGGTTTA-TTTCTTGT-----CTAAGAAGTCAGATAAATTATTTCCATTTCAAGTATTTATTATTCAGATTATTTAAAGCAAAGCTTTCACAAAGCCTTTTGTCAGCTTTCCGATAATCCTCAAATAG i nomLeu3.chr13 C 0 C 0 s rheMac3.chr3 7188523 260 - 198365852 ATACATAAT-TCATCTACTTAGGTAGGTGCCAGGTTTTTTCAAGGAGTAGTTAATTAGTACAAACAAGGGT-GGGGGAGCAGGGAGCACCATACTCTGGT--------TCTTAAATTATCAGGGGATTTAACTAACACATTTTCCC-----ATACGTTTA-TTTTTTGT-----GTAAGAAGTCAGATAAATTATTTCCATTTCAAGTATTTATTATTCAGATTATTTAAAGCAAAGCTTTCACAAAGCCTTTTGCCAGCTTTCCCATAATCCTCAAATAT i rheMac3.chr3 C 0 C 0 s macFas5.chr3 7354021 257 - 192294377 ATACATAAT-TCATCTACTTAGGTAGGTGCCAGGTTTTTTCAAGGAGTAGTTAATTAGTACAAACAAGGGT-GGGGGAGCAGGGAGCACCATACTCTGGT--------TCTTAAATTATCAGGGAATTTAACTAACACATTTTCCC-----ATACGTTTA-TTTTTTGT-----GTAAGAAGTCAGATAAATTATTTCCATTTCAAGTAT---TTATTCAGATTATTTAAAGCAAAGCTTTCACAAAGCCTTTTGCCAGCTTTCCCATAATCCTCAAATAT i macFas5.chr3 C 0 C 0 s papAnu2.chr3 6918667 260 - 180432695 atacataat-tcaTCTACTTAGGTAGGTGCCAGGTTTTTTCAAGGAGTAGTTAATTAGTACAAACAAGGGT-GGGGGAGCAGGGAGCACCATACTCTGGT--------TCTTAAATTATCAGGGAATTTAACTAACACATTTTCCC-----ATAcgttta-ttttttgt-----gtaagaaGTCAGATAAATTGTTTCCATTTCAGGTATTTATTATTCAGATTATTTAAAGCAAAGCTTTCACAAAGCCTTTTGCCAGCTTTCCCAtaatcctcaaatat i papAnu2.chr3 C 0 C 0 s chlSab2.chr21 6818503 261 - 127223203 ATACATAAT-TCATCTACTTAGGTAGGTGCCAGGTTTTTTCAAGGAGTAGTTAATTAGTACAAACAAGGGT-GGGGGAGCAGGGAACACCATACTCTGGT--------TCTTAAATTATCAGGGAATTTAACTAACACATTTTCCC-----ATACGTTTATTTTTTTGT-----GTAAGAAGTCAGATAAATTATTTCCATTTCAAGTATTTATTATTCAGATTATTTAAAGCAAAGCTTTCACAAAGCCTTTTGTCAGCTTTCCCATGATCCTCAAATAT i chlSab2.chr21 C 0 C 0 s calJac3.chr8 94481309 268 + 128169293 atacaTAAT-TTATCTACTTATGTAGGTCCCAGGTTTTTTCAAGGAGTAATTAATTAGTAAAAACAA-GGT-AGGGGGTTTGGGAAAACTATACTCTGGTACTTAATGTCTTAAATTATCAGAGAATT----TAACGTGTTTTCCC-----ATAGGTTTA-TTTCTTGTGTTGGGTAAGAAGTCAGATAAATAATTTCCATTTCAGGTATTTATTATTCAGATTATTTAAAACAAAGCTTTCACAAAACCTTTTTTCAGCTTTCCTATAATTCTCGAATAA i calJac3.chr8 I 323 C 0 s canFam3.chr16 43582290 258 - 59632846 AT-CAGAATGTTGTCGA--TGTGTTGATATCAGACTTTTTCAGGAAGTAACACATAAGTCTGCATATAAAC-AAAACAACAGTAATAAATA-ACCCAAGTATTTATT-TGTTAAAGTATCAGAGAATT----TAACCTGTTTTCCCAAAGAATATTTTTA-TACATTGG-----GTAAAAATTCAGATCAGTTATTTGTATTTCAAGTAATTATTATCCTGATGAGTTAAAGCAAGCTGTTTAC-------TCTATTAGCTTTCCTGTAATCTTTAAATAC i canFam3.chr16 C 0 C 0 a score=475255.000000 s hg38.chr1_KI270765v1_alt 173657 184 + 185285 TTTTTCCTGgctggacgctttggcttactcc-tgtaa-tcctggc-actttgggaggcagaagc--aggaggatcacttgagccca--agagttct-aggctgcagtgag-ctg-tgatcacaccact-gcact-ccaacctgagtgac-ggatcaagttcttgtctcaaaaa--taaaCGTAATAACAATAATAATAA s panTro4.chr2A 22208636 179 - 113622374 TTTTTCCTGgctggacgctttggcttactcc-tgtaa-tcctggc-actttgggaggtagaagc--aggaggatcacttgagccca--agagttct-aggctgcagtgag-ctg-tgatcac-----t-gcact-ccaacctgagtgat-ggatcaagttcttgtctcaaaaa--taaaaGTAATAACAATAATAAAAA i panTro4.chr2A C 0 C 0 s ponAbe2.chr7 7580420 197 - 157549271 TTTTTCCTGgctggacgctttggcttactccgtgtaattcctggcgactttgggaggcagaagc--aggaggatcacttgagcccaagagagttctaaggctgcagtgagnctgntgatcacaccactggcactcccaacctgagtgacgggagcaagttcttgtctcaaaaaataaaaaGTAATAACAATAATAATAA i ponAbe2.chr7 C 0 C 0 s nomLeu3.chr13 7279376 184 - 110113093 TTTTTCCTGgctggatgctttggtttactcc-tgtaa-tcctggc-actttgggaggcagaagc--aggaggatcacttgagccca--agagttct-aggctgcagtgag-ctg-tgatcacaccact-gcact-ccaacctgagtgac-agagcaagttcttgtctcaaaaa--taaaaGTAATAACAATAATAATAC i nomLeu3.chr13 C 0 C 0 s rheMac3.chr3 7188783 178 - 198365852 TTTTTCCTGgctagacgcttaggcttactcc-tgtaa-tcccagc-actttgggaggcagaagc--aggaggatcacttgagtcca--aaagttct-gggctgcagtgag-ctg-tgatcacaccact-gcact-ccagcctgaatgac-agaacaagttcttgtctcaaaaa--taaaaGT------AATAATAATAA i rheMac3.chr3 C 0 C 0 s macFas5.chr3 7354278 178 - 192294377 TTTTTCCTGgctagacgcttaggcttactcc-tgtaa-tcccagc-actttgggaggcagaagc--aggaggatcacttgagtcca--aaagttct-gggctgcagtgag-ctg-tgatcacaccact-gcact-ccagcctgaatgac-agaacaagttcttgtctcaaaaa--taaaGGT------AATAATAATAA i macFas5.chr3 C 0 C 0 s papAnu2.chr3 6918927 178 - 180432695 tttttcctggctGGACGCTtaggcttactcc-tgtaa-tcccagc-actttgggaggcagaagc--aggaggatcacttgagtcca--agagttct-gggctgcagtgag-ctg-tgatcacactact-gcact-ccagcctgaatgac-agaacaagttcttgtctcaaaaa--taaaagt------aataataataa i papAnu2.chr3 C 0 C 0 s chlSab2.chr21 6818764 178 - 127223203 TTTTTCCTGgctggacacttaggcttactcc-tgtaa-tcccagc-actttgggaggcagaagc--aggaggatcacttgagccca--agagttct-gggctgcagtgag-ctg-tgatcacaccact-gcact-ccagcctgaatgac-agaacaagttcttgtctcaaaaa--taaaaGT------AATAATAATAA i chlSab2.chr21 C 0 C 0 s calJac3.chr8 94481577 181 + 128169293 TTTTT-CTGGATGGACACTTGggcttactcc-tgtca-tcccagc-actttgggaggcagaagcagaggaggatcacttcagccca--ggagctgt-gggctgcagcgag-cca-tcactacaccatt-gcact-ccagcctgaatgac-agagc-agttcctgtctcaaaat--taaaaaTAAT---AACAATAATGA i calJac3.chr8 C 0 C 0 e canFam3.chr16 43582548 0 - 59632846 C a score=3652985.000000 s hg38.chr1_KI270765v1_alt 173841 1133 + 185285 ATTTTCCTCTAAATACAATGGT-GAATGAGGTAGAAATGTTGA-G-----TTCATAAGAGAACTGTTGAATAGTGAAGGAAACTGACTTAATTTTAATGACAGGAAGAATACTGTTACACACTAGCAAAAATAAAC-TTTCATGC--TGATGTAGCAG-TACAGAATATGCTTCCAACCCAGGGACGCTGGAgccaggcttgctagctaagcgaccttggacaagttacttaaccattttattcctcagcacactca--tctcaaacgaggataataaaac-----ctactatatgggattgttgagagtaaaaaatacttagattagtacatagtaagtactcaata-gatgttagctattactGTAATCACCGCGAGACCAGTTAATGAGAGAGTTCTT-CCTTATCCTTACTCTATATTGAATAC-AATTTGTTGCACTTCGAAATATCTGGATAAGGCTATAGTTGTTGTCGTCACCGAGAATGTAGGAGTGGCAAAGAGAAAAATCATGCAAAGGCTTGCTGATAG----CGTTCACAGTGACAGCCCGAAAGTATGATTCTAAGG----TTGTAAGCATTTTATATTTAGAATTTTAAGTTGTGGAATATACTTTTAAAGATAAAAATAATAAGCCAGGTCTCTTAATACTTATCT-----------------AAAGAAGTGTTTGTA-----TAACATTTAATAAAATGTTTTATCTCAGTGGCATTTGGATTTAAAAATTATTTTGGGCTGTCACAGAATGTTGACTTTT-CCTAATCTGTTACATAGGGCCATGGGTCTGGATTTCCAGGAAAGCGGAGACCTCGAGGTGCAGGACTGTCGGGGCGAGGTGGCCGAGGCAGGTCAAAGCTGAAAAGTGGAATCGGAGCTGTTGTATTGCCTGGGGTGAGGC-----------TTGCTTCATGTATATTTTCTCTAATCTAAAT-GTCAGT---TAATGATG-AAAATCTCAT----AG-CAAGTTATTTTGAACTTAAA-AATCATAT-AAATAGG--TCAAAATGTTTATTTTA-------CTGT-CCTACTTTGCTTTTTTTTTTTTTTTT---------------GAGCCTCTGGTTACGTTTtcttgtatatttac--tttctcatcctt-t--ctcttttcttacc-ttcctctttgactccttatctttCTATGCCAACCCTCTCT----------------------------------------------------AAAAAGTCAGTAT-------------------------------GTAATATAGT------------------------------------TGCTC s panTro4.chr2A 22208815 1133 - 113622374 ATTTTCCTCTAAATACAATGGT-GAATGAGGTAGAAATGTTGA-G-----TTCATAAGAGAATTGTTGAATAGTGAAGGAAACTGACTTAATTTTAATGACAGGAAGAATACTGTTACACACTAGCAAAAATGAAC-TTTCATGC--TGATGTAGCAG-TACAGAATATGCTTCCAACCCAGGGACGCTGGAgccaggcttgctagctaagcgaccttggacaagttacttaaccattttattcctcagcacactca--tctcaaatgaggataataaaac-----ctactatatgggattgttgagagtaaaaaatacttagattagtacatagtaaatactcaata-gatgttagctattactGTAATCACCGCGAGACCAGTTAATGAGAGAGTTCTT-CCTTATCCTTACTCTATATCGAATAC-AATTTGTTGCACTTCGAAATATCTGGATAAGGCTATAGTTGTTGTCGTCACCGAGAATGTAGGAGTGGCAAAGAGAAAAATCCTGCAAAGGCTTGCTGATAG----CGTTCACAGTGACAGCCCGAAAGTATGATTCTAAGG----TTGTAAGCATTTTAT---TAGAATTTTAAGTTGTGGAATATACTTTTAAAGATAAAAATAATAAGCCAGGTCTCTTAATACTTATCT-----------------AAAGAAGTGTTTGTA-----TAACATTTAATAAAATGTTTTATCTCAGTGGCATTTGGATTTAAAAATTATTTTGGGCTGTCACAGAATGTTGACTTTT-CCTAATCTGTTACATAGGGCCATGGGTCTGGATTTCCAGGAAAGCGGAGACCTCGAGGTGCAGGACTGTCGGGGCGAGTTGGCCGAGGCAGGTCAAAGCTGAAAAGTGGAATCGGAGCTGTTGTATTGCCTGGGGTGAGGC-----------TTGCTTCATGTATATTTTCTCCAATCTAAAT-GTCAGT---TAATGATG-AAAATCTCAT----AG-CAAGTTATTTTGAACTTAAA-AGTCATAT-AAATAGG--TCAAAATGTTTATTTTA-------CTGT-CCTACTTTGCTTTTTTTTTTTTTTTT------------TTTGAGCCTCTGGTTACGTTTTCTTGTATATTTAC--TTTCTCATCCTG-T--CTCTTTTCTTACC-TTCCTCTTTGACTCCTTATCTTTCTATGCCAACCCTCTCT----------------------------------------------------AAAAAGTCAGTAT-------------------------------GTAATATAGT------------------------------------TGCTC i panTro4.chr2A C 0 C 0 s ponAbe2.chr7 7580617 1150 - 157549271 ATTTTCCTCTAAATACAATGGT-GAATGAGGTAGAAATGTTGAGG-----TTCATAAGAGAACTGTTGAATAGTGAAGGAAACTGACTTAATTTTAATGACAAGAAGAATACTGTTACACACTAGCAAAAATGAAC-TTTCATGC--TGATGTAGCAGATACAGAATATggttccaacccagggacgctggagccagacttgctagctaagtgaccttggacaagttacttaacctttttattcctcagcacactca--tctcaaatggggataataaaac-----ctactgtatgggattgttgagagtaaaaaatacttagattagtacatagtaagtactcaataggatgttagctagtactGTAATCACCACGAGACCAGTTAATGAGAGAGTTCTTCCCTTATACTTACTCTATATTGAATACAAATTTGTTGCACTTCAAAATATCTGGATCAGGCTATAGTTGTTGTCGGCACTGAGAATGTAGGAGTGGGAAAGAGAAAAATCATGCAAAGGCTTGCTGATAG----TGTTCACAGTGACAGGCCTAAGGTATGATTCTAAAGGTATGTGTAAGCATTTTATATTTAGATTTTTAAGTTGTGGAGTATACTTTTAAAGATAAAAATAATAAGCCAGGTCTCTTAATAGTTACCT-----------------AAAGAAGTGTTTGTG-----TAACATTTAATAAAATGTTTTATCTCAGTGGCATTTGGATTTAAAAATTATTTTGGGCTGTCACAGAATGTTGACTTTT-CCTCATCTGTCACATAGGGCCGTGGGTCTGGATTTCCAGGAAAGCGGAGACCTCGAGGTGCAGGACTGTCGGGGCGAGGTGGCCGAGGCAGGTCAAAGCTGAAAAGTGGAATCGGAGCTGTTGTATTGCCTGGGGTGAGGC-----------TTGCTTCATGTATATTTTCTCTAATCTAAATGGTCAGT---TAATGATG-AAAATCTCAT----AGCCAAGTTATTTTGATCTTAAAGAGTCATATAAAATAGGGTCAAAAATGtttatttta-------ctgtccctactttgcttttttttttttttt-----------------agcctctggttacattttcttgtatatttact-tttctcatcctt-t--ctcttttcttacctttcctctttgcctccttatctttctATGCCAACCCTCTCT----------------------------------------------------AAAAAGTCAGTATG------------------------------GTAATATAGT------------------------------------TGCTC i ponAbe2.chr7 C 0 C 0 s nomLeu3.chr13 7279560 1138 - 110113093 ATTTTCCTCTAAATACAATGGT-GAATGAGGTAGAAATGTTGA-G-----TTCATAAGAGAACTGCTGAATAGTGAAGGAAACTGACTTAACTTTAATGACAAGAAGAATACTGTTACACACTAGCAAAAATGAAT-TTTCATGC--TGATATAGCAG-TACAGAATATggttccaacccagggatgctggagccagacttgctagctaagtgaccttggacaagttacttaacctttttattcctcagcacactca--tctcaaatggggataataaaac-----ctactatatggggttgttgagagtaaaaaatacttagattagtacatagtaagtactcaata-gatgttagctgttactGTAATCACCGCGAGACCAGTTAATGAGAGAGTTCTT-TCTTATACTTACTCTGTATTGAATAC-AATTTGTTGCACTTCGAACTCTCTTGATCAGGCTATAGTTGTTGTAGCCACCAAGAATGTAGGAGTGGGAAAGAGAAAAATCATGCAAAGGCTTGCTGATAG----CGTTCACAGTAAGAGGCCTAAGATATGATTCTAAGG----TTGTAAGCATTTTATATTTAGATTTTTAAGTTGTGGAGTATACTTTTAAAGATAAAAATAATAAGCCAGGTCTCTTAATACTTATCT-----------------AAAGAAGTGTTTGTG-----TAACATTTAATAAAATGTTTTATCTCAGTGGCATTTGGATTTAAAAATTATTTTGGGCTGTCACAGAATGTTGACTTTT-CCTAATCTGTTACATAGGGCCGTGGGTCTGGATTTCCAGGAAAGCGGAGACCTCGAGGTGCAGGACTGTCGGGGCGAGGTGGCCGAGGCAGGTCAAAGCTGAAAAGTGGAATCGGAGCTGTTGTATTGCCTGGGGTGAGGC-----------TTGCTTCATGTATATTTTCTCTAATTTAAAT-GTCAGT---TAATGATG-AAAATCTCAT----AG-CAAGTTATTTTGATCTTAAG-AGTCATAT-AAGTAGG--CCAAAATGTTTATTTTA-------CTGT-CCTActttgctttttttttttttttt------tttttttttgagcctctggttacgttttcttgtatatttac--tttctcatcctt-t--ctcttttcttacc-ttcctctttGACTCCTTAACTTTCTATGCCAACCCTCTCT----------------------------------------------------AAAA----AGTAT-------------------------------GTAATATAGT------------------------------------TGCTC i nomLeu3.chr13 C 0 C 0 s rheMac3.chr3 7188961 1137 - 198365852 ATTTTCCTCTAAGTACTATGGT-GAATGAGGTAGAAATGTTGA-G-----TTCATAAGAGAACTGTTGAATAGTGAAGGAAACTGACTTAATTTTAATGACAGGAAGAATACTGTTACACACTAGCAAAAATGAAC-TTTCATGC--TGATGTAGCAG-TACAGAATATggttccaacccagggacgctggagccagacttgctagataagtgactttggacaagttacttaacctttttactcctcagcaaagtca--tctaaaatggggataataaaac-----ctgctatatggaattgttgagagtaaaaaattcttagattagtacatagtaagtactcaata-gatactagctattactGTAATCACTGCAAGACCAGTTAATGAGAGAGTTCTT-CCTTATACGTACTCTATATTAAATAT-AATTTGTTGCACTTCGAAATATCTGGATTAGGCTATAGTTGTTGTAGCCACCGAGAATGTAGGAGTGGGAAAGAGAAAAATCATGCAAAGGCTTGCTGAAAG----CGTTCACAGTGACAGGCCCAAGGTATGATTCTAAGG----TTGTAAACATTTTATATTTAGATTTTTAAGTTGTGGAGTATGCTTTTAAAGATACAAATAATAAGCCAGGTTTCTTAATACTTACCT-----------------AAAGAAGTGTTTGTG-----TAACATTTGATAAAATGTTTTATCTCAGTGGCATTTGGATTTAAAAATTCTTTTCGGCTGTCACAGAATGTTGACTTTT-CCTAATCTGTTACATAGGGCCGTGGGTCTGGATTTCCAGGAAAGCGGAGACCTCGAGGTGCAGGACTGTCGGGACGAGGTGGCCGAGGCAGGTCAAAGCTGAAAAGTGGAATCGGAGCTGTTGTATTGCCTGGGGTGAGGC-----------TTGCTTCATGTATATTTTCTCTAATCTAAAT-GTCAGT------TGATG-AAAATCTCAC----AG-CAAGTTATTTTGATCTTAAG-AATCATAT-AAATAGG--CCAAAATGtttattttattttattctgtctctattttgc-tttttttttttttTT---------------GAGCCTCTGGTTACATTTTCTTGTATATTTAC--TTTCTCATCCTT-T--CTCTTTCCTTACC-TTCCTCTTTGACTCCTTATCTTTCTATGCCAACCCTCTCT----------------------------------------------------AAAAAGTCAATGT-------------------------------GTAATATAGT------------------------------------TGCTC i rheMac3.chr3 C 0 C 0 s macFas5.chr3 7354456 1135 - 192294377 ATTTTCCTCTAAGTACTATGGT-GAATGAGGTAGAAATGTTGA-G-----TTCATAAGAGAACTGTTGAATAGTGAAGGAAACTGACTTAATTTTAATGACAGGAAGAATACTGTTACACACTAGCAAAAATGAGC-TTTCATGC--TGATGTAGCAG-TACAGAATATggttccaacccagggacgctggagccagacttgctagataagtgactttggacaagttacttaacctttttactcctcagcaaagtca--tctaaaatggggataataaaac-----ctgctatatgggattgttgagagtaaaaaattcttagattagtacatagtaagtactcaata-gatactagctattactGTAATCACTGCAAGACCAGTTAATGAGAGAGTTCTT-CCTTATACGTACTCTATATTAAATAT-AATTTGTTGCACTTCGAAATATCTGGATTAGGCTATAGTTGTTGTAGCCACCGAGAATGTAGGAGTGGGAAAGAGAAAAATCATGCAAAGGCTTGCTGAAAG----CGTTCACAGTGACAGGCCCAAGGTATGATTCTAAGG----TTGTAAACATTTTATATTTAGATTTTTAAGTTGTGGAGTATGCTTTTAAAGATACAAATAATAAGCCAGGTTTCTTAATACTTACCT-----------------AAAGAAGTGTTTGTG-----TAACATTTGATAAAATGTTTTATCTCAGTGGCATTTGGATTTAAAAATTCTTTTCGGCTGTCACAGAATGTTGACTTTT-CCTAATCTGTTACATAGGGCCGTGGGTCTGGATTTCCAGGAAAGCGGAGACCTCGAGGTGCAGGACTGTCGGGACGAGGTGGCCGAGGCAGGTCAAAGCTGAAAAGTGGAATCGGAGCTGTTGTATTGCCTGGGGTGAGGC-----------TTGCTTCATGTATATTTTCTCTAATCTAAAT-GTCAGT------TGATG-AAAATCTCAC----AG-CAAGTTATTTTGATCTTAAG-AATCATAT-AAATAGG--CCAAAATGtttattttattttattctgtctctattttgc---ttttttttttttt---------------GAGCCTCTGGTTACATTTtcttgtatatttac--tttctcatcctt-t--ctctttccttacc-ttcctctttgactccttatctttCTATGCCAACCCTCTCT----------------------------------------------------AAAAAGTCAATGT-------------------------------GTAATATAGT------------------------------------TGCTC i macFas5.chr3 C 0 C 0 s papAnu2.chr3 6919105 1137 - 180432695 attttcctctaagtacTATGGT-GAATGAGGTAGAAATGTTGA-G-----TTCATAAGAGAACTGTTGAATAGTGAAGGAAACTGACTTAATTTTAATGACAGGAAGAATACTGTTACACACTAGCAAAAATGAAC-TTTCATGC--TGATGTAGCAG-TACAGAATATGGTTCCAACCCAGGGACGCTGGAGCCAGACTTGCTAGATaagtgactttggacaagttacttaacctttttaCTCCTCAGCAAAGTca--tctaaaatggggataataaaac-----cTGCTATATGGGATTGTTGAGAGTAAAAAATACTTAGATTagtacatagtaagtactcaata-gaTACTAGCTATTACTGTAATCACTGCAAGACCAGTTAATGAGAGAGTTCTT-CCTTATACGTActctatattaaatat-aatttgttgCACTTCGAAATATCTGGATTAGGCTATAGTTGGTGTAGCCACCAAGAATGTAGgagtgggaaagagaaaaatcatgcaAAGGCTTGCTGAAAG----CGTTCACAGTGACAGGCCCAAGGTATGATTCTAAGg----ttgtaaacattttatatttagatttttaagttGTGGAGTATGCTTTTAAAGATACAATTAATAAGCCAGGTTTCTTAATACTTACCT-----------------AAAGAAGTGTTTGTG-----TAACATTtgataaaatgttttatcttaGTGGCATTtggatttaaaaattcttttcggCTGTCACAGAATGTTGACTTTT-TCTAATCTGTTACATAGGGCCGTGGGTCTGGATTTCCAGGAAAGCGGAGACCTCGAGGTGCAGGACTGTCGGGGCGAGGTGGCCGAGGCAGGTCAAAGCTGAAAAGTGGAATCGGAGCTGTTGTATTGCCTGGGGTGAGGC-----------TTGCTTCATGTATATTTTCTCTAATCTAAAT-GTCAGT------TGATG-AAAATCTCAC----AG-CAAGTTGTTTTGATCTTAAG-AATCATAT-AAATAgg--ccaaaatgtttattttattttattctgtctctattttgctttttttttttttttt---------------gagcctct-tttacattttcttgtatatttac--tttctcatcctt-t--ctctttccttacc-TTCCTCTTTGACTCCTTATCTTTCTATGCCAACCCTCTCT----------------------------------------------------AAAAAGTCAATGT-------------------------------GTAATATAGt------------------------------------tgctc i papAnu2.chr3 C 0 C 0 s chlSab2.chr21 6818942 1138 - 127223203 ATTTTCCTCTAAGTACTATGGT-GAATGAGGTAGAAATGTTGA-GTCCCTTTCATAAGAGAACTGTTGAATAGTGAAGGAAACTGACTTAATTTTAATGACAGGAAGAATACTGTTACACACTAGCAAAAATGAAC-TTTCATGC--TGATGTAGCAG-TACAGAATATggttccaacccagggacgctggagccagacttgctagataagtgaccttggacaagttacttaacctttttattcctcagcaaagtca--tctaaaatggggataataaaac-----ctactatatgggattgtcgagagtaaaaaatacttagattagtacatagtaagtactcaata-gatactagctattactGTAATCACTGCAAGACCAGTTAATGAGAGAGTTCTT-CCTTATACGTACTCTATATTAAATAC-AATTTGTTGCACTTCGAAATATCTGGATTAGGCTATAGTTGTTGTAGCCATCGTGAATGTAGGAGTGGGAAAGAGAAAAATCATGCAAAGGCTTGCTGAAAG----CGTTCACAGTGACAGGCCCAAGGTATGATTCTAAGG----TTGTAAACATTTTATATTTAGATTTTTAAGTTGTGGAGTATGCTTTTAAAGATACAAATAATAAGCCAAGTTTCTTAATACTTACCT-----------------AAAGAAGTGTTTGTG-----TAACATTTAATAAAATGTTTTATCTCAGTGGCATTTGGATTTAAAAATTTTTTTCGGCTGTCACAGAATGTTGACTTTT-CCTAATCTGTTACATAGGGCCGTGGGTCTGGATTTCCAGGAAAGCGGAGACCTCGAGGTGCAGGACTGTCGGGGCGAGGTGGCCGAGGCAGGTCAAAGCTGAAAAGTGGAATCGGAGCTGTTGTATTGCCTGGGGTGAGGC-----------TTGCTTCATGTATATTTTCTCTAATCTAAAT-GTCAGT------TGATG-AAAATCTCAC----AG-CAAGTTATTTTGATCTTAAG-AATCATAT-AAATATG--CCAAAATG-----TTTATTTTACTCTGTCTCTAttttgctttttttttttttttt---------------GAGCCTGTGGTTACATTTtcttgtatatttac--tttctcatcctt-t--ctctttccttacc-ttcctctttgactccttatctttCTATGCCAACCCTCTCT----------------------------------------------------AAAAAGTCAATGT-------------------------------GTAATATAGT------------------------------------TGCTC i chlSab2.chr21 C 0 C 0 s calJac3.chr8 94481758 1120 + 128169293 ATTTTCCTCTAAATACTATGGT-GAATGAGGCAGAAATGTTGA-G-----TTCATAAGAGAACTGTTGAATAGTGAAGGCAACGGACTTAATTTTAATGACACGAAGAACACTGTTATACACTAGCAAAAATGAACTTTTCATGC--CGATGTAGTAA-TACAGAATATGGTTCCAAACCAGGGACACTGGAGTCAGatttgctagctatgttaccttggacaagttacttaatctttttattctttagcacactca--tctaaaatagggataataaaacagtaaccactatgtggggttgttaagagtaaaaaatacttagattagtacatagtaagtactcaata-gatgttagctattactATAATCACTGTGAGACCAGTTAATGAGAGAGTTCTT-CCTTA----TACTTTGTATTGAATAC-AATTTGTTGCACTTCGAAATGTCTGGTTCACATTGTAGCTGTTGTAGCCACTTAGAATGTAGGAGTGGGAAACAGTAAAATCATGCAAAGCCTTCCTGATAG----TGTTCACAGTGACAGGCCCACGGTATAATTCTAAGG----TTGTAAGCCTTTTGTATTTAGATTTTTAAG-TGTGGAGTAATGTTTTAAAGATACA---AATAAGCCAGGTTTTGTAATACTT----------------------AGAAAGTGTTTGCG-----TAACATTAAATAAAATGTTTTATCTCAGTGGCATTTGGATTTAAAAATTCCTTTGGGCTGTCACAAAATGTTGAC-TTT-CCTAATCTGTTACATAGGGCCGTGGGTCTGGATTTCCAGGAAAGCGGAGACCTCGAGGTGCGGGACTGTCGGGGCGAGGTGGCCGAGGCAGGTCAAAGCTGAAAAGTGGAATCGGAGCTGTTGTATTGCCTGGGGTGAGGC-----------TTGCTTCATATATCTTTTCTCTCATCTAAAT-GTCAAT---TAATGATGAAAAATCTCACTTGTAG-CAAGTTATTGTGATATTAAG-AGTCATAT-AAATAGG--CCAGAACGTTTATTTTA-----CTCTGTCTCTACTTTTCTTTTTTTGGACTCTCT--------------------TGTTGTTAAGTTTTCTT-TATATTTAC--TTTCTCATCTTTCT--CTCTTTTCTTACC-TTCCTCTTTGACTC--------TCTATGCCAACCCTTTCT----------------------------------------------------AAAACGTCAATAT-------------------------------GTAATATATA------------------------------------CGCTC i calJac3.chr8 C 0 I 300 s canFam3.chr16 43582548 1274 - 59632846 ATTATCCTTTAAGTACTGTGATAGAGTGAGGTACATCTGTTCA-G-----TTCATAC---AGCTATTGAATAGTAAAGGAAACTGAC--AATTTTAATGACAGGAAAAATATTGTTATACACTAGCAAAATTTAGC-TTTCATGCAGTGTAGTAGcag-tgcagaatactggttgagaatgtggatactggagctacagttgctagctcta-gactttggacaagtta------cattttatccctcggcgcatttatctctaaaatggggataataaaat----actactggccttgtgagttgtgagtaaaaggtgcttagagtggtgtatag-aagtactcaata-tatgtcagctattGCTACAATTACAG--AGAACAGTTAGCAAGAGAGTCTTT-CCTTACGCTTGCTCTGTATTGCATAC-AAATTG-------------------GTTGGGATTGTGTCTGTTG-AGCTACTTAGAATGTAGGATTAGGAAGTGAAAAAATAAGGCCAAGGTTTACTGATAGAGAACATTCACAATATGAGTCCCAACATTTGATTCTAAGA----TCATAGGCATTTTATGTCTATACTTTTAAGTTGCATAATACATGTTGAAAGATAAAAATAATAAGCCTGGTCTCTTAATATTTAACCTCTAATCAGAGTAAGAAAAGCAAGTATTTGTGTGTTATAACCTTTAATAAAATGTTTTAGCTCA-----CGTTGGATTTTAATATTCCTTTGGATTTTTGCAGAATGCTGATTTTTCCCTTCTCTGTTATGTAGGGCCGTGGGTCAGGATTTCCAGGAAAGCGAAGACCCCGTGGTGCGGGGTTGTCAGGACGAGGTGGCAGAGGCAGGTCAAAATTGAAAAGTGGAATTGGAGCAGTTGTGTTACCTGGGGTAAGACACATGTCTCATTTGCTTTATCTTTGCTAT-TATAATCCATAA-TTTATTGAGTGATGATG-ATAATCTCAT---TTG-TAAAATTACTAGATTGTAAG-AGTCACGT-AAATAAG--CCAAAATTTTTATTTTA-----CCTTATCTCCATTCCCCCCCCCCCCCCTTTTTAAAAACACTTCTGGGCAAGTTTTCatttaaattttctttaatattttatatttCCCATCTTT-TTACTCTTTTCTTACC-TTCCTCTTTGAC-------CTTTCTATGCCAACCATTCTTATATATATATATTGCTTCTTTAATAAAAGCAAATTCCTGTTACATTATTGCAAAAAACTTAATTTGAAAACCTTAAGTAGGTGTTTTAAGTTTATTGTAATATGGCTTACAGAAGAAACTAGAAATGTTGCAGATTAGTACATACTC i canFam3.chr16 C 0 I 15 a score=6552.000000 s hg38.chr1_KI270765v1_alt 174974 2 + 185285 TT s panTro4.chr2A 22209948 2 - 113622374 TT i panTro4.chr2A C 0 C 0 s ponAbe2.chr7 7581767 2 - 157549271 tt i ponAbe2.chr7 C 0 C 0 s nomLeu3.chr13 7280698 2 - 110113093 TT i nomLeu3.chr13 C 0 C 0 s rheMac3.chr3 7190098 2 - 198365852 TT i rheMac3.chr3 C 0 C 0 s macFas5.chr3 7355591 2 - 192294377 TT i macFas5.chr3 C 0 C 0 s papAnu2.chr3 6920242 2 - 180432695 tt i papAnu2.chr3 C 0 C 0 s chlSab2.chr21 6820080 2 - 127223203 TT i chlSab2.chr21 C 0 C 0 s canFam3.chr16 43583837 2 - 59632846 TT i canFam3.chr16 I 15 C 0 e calJac3.chr8 94482878 300 + 128169293 I a score=540776.000000 s hg38.chr1_KI270765v1_alt 174976 174 + 185285 TTA--------TTTAAAAAA-TTTTAA-----GATT----GATATTTGC-TTACTATCATGT-TACGA-GGCTTTATTTATATGTGTATTACAAA-----TATATTTGTTAACTACTAGCAAATATTTTATGTAATAACTTCGCTATTTTATTAAAATCCTGTTTTTAAAATTCTGAAATGTCATTTTAAGTATAGGAGA s panTro4.chr2A 22209950 174 - 113622374 TTA--------TTTAAAAAA-TTTTAA-----GATT----GATATTTGC-TTACTATCATGT-TATGA-GGCTTTATTTCTATGTGTATTACAAA-----TATATTTGTTAACTACTAGCAAATATTTTATGTAATAACTTCGCTATTTTATTAAAATCCTGTTTTTAAAATTCTGAAATGTCATTTTAAGTATAGGAGA i panTro4.chr2A C 0 C 0 s ponAbe2.chr7 7581769 181 - 157549271 tta--------tttaaaaaatttttaa-----GATTGATAGATATTTGCTTTACTATCATGT-TACGACGGCTTTATTTATATGTGTATTACAAA-----TTTATTTGCTAACTACTAGCAAATATTTTATGTAATAACTTTGCTATTTTATTAAAATCCTGTTTTTAAAATTCTGAAATGTCATTTTAAGTATAGGAGA i ponAbe2.chr7 C 0 C 0 s nomLeu3.chr13 7280700 178 - 110113093 TTA--------TTTAAAAAA-TTTCAA-----GATTGATAGGTATTTGC-TTACTATCATGT-TATGA-GGCTTTATTTATATGTGTATTACAAA-----TGTATTTGCTAACTACTAGCAAATGTTTTATGTAATAACTTTGCTATTTTATTAAAATCCTGTTTTTAAAATTCTGAAATGTCATTTTAAGTATAGGAGA i nomLeu3.chr13 C 0 C 0 s rheMac3.chr3 7190100 170 - 198365852 TCA--------TTTAAAAAA-TTTTAA-----GATTGATAGATATTTGC-TTA-TATCATGT-TATGA-GGCTTTATTTATATGTGCATTACAAA-----CATATTTGCTAACTACTAGCAAATATTTTGTGTAATAACTTCACTATTTTATTAAAATCCTATTTTTAAAATTCTGAAATGTCATTTTAAGT-------A i rheMac3.chr3 C 0 C 0 s macFas5.chr3 7355593 170 - 192294377 TCA--------TTTAAAAAA-TTTTAA-----GATTGATAGATATTTGT-TTA-TATCATGT-TATGA-GGCTTTATTTATATGTGCATTACAAA-----CATATTTGCTAACTACTAGCAAATATTTTGTGTAATAACTTCACTATTTTATTAAAATCCTATTTTTAAAATTCTGAAATGTCATTTTAAGT-------A i macFas5.chr3 C 0 C 0 s papAnu2.chr3 6920244 167 - 180432695 tta--------tttaaaaaa-ttttaa-----gattgaT-GATATTTGC-TTA-TATCATGT-TATGA-GGCTT--TTTATATGTGCATTACAAA-----TATATTTGCTAACTACTAGCAAATATTTTGTGTAATAACTtcactattttattaaaatcctatttttaaaattctgaaatgtcATTTTAAGT-------A i papAnu2.chr3 C 0 C 0 s chlSab2.chr21 6820082 166 - 127223203 TTA--------TTTTAAAAA-TTTTAA-----GATT----GATATTTGC-TTA-TATCATGT-TATGA-GGCTTTATTTATATGTGCATTACAAA-----TATATTTGCTAACTACTAGCAGATATTTTATGTAATAACTTCGCTATTTTATTAAAATCCTGTTTTTAAAATTCTGAAATGTCATTTTAAGT-------A i chlSab2.chr21 C 0 C 0 s calJac3.chr8 94483178 178 + 128169293 TTA--------TTTAAAAAA-TTTTAA-----GATTGATAAATATTTGC-TTATTGGCATGT-TATGA-GGCTTTATTTAGATGTGCATTACAAA-----TATGTTTGCTAACTACTGGCAAATATTTTATGTGACAACTTTGCTATTTTATTAAAATCCTGTCTTTTAAATTCTGAAATGTCATGTTAAGTTCAAGAGA i calJac3.chr8 I 300 C 0 s canFam3.chr16 43583839 196 - 59632846 TTATGACTGTCTTTGATATA-TTTTAATTCAGGATTGATCAGTATTTGC-TCAATGGCATGTATATGA-GGCTTTATTTAAGTGTGTATTGAAAAAAATCTGTATTTGGCAAAGAGTGGCAAATATTTCATGTGGTAACTTTACTATTTTACCAAAATCCTGTTTTTCAAATTCT-AATTGTCATTTTAAGTTCAGGAGA i canFam3.chr16 C 0 I 2406 a score=1350679.000000 s hg38.chr1_KI270765v1_alt 175150 469 + 185285 CAGGTGAAATTGTTCAAGTTTACTACTAAACC---AGGAATAAGGAAGCTTAGATTCTTGTCC-TTTTTTCAAAAAGAAAAAttttaaaaccaggcttattgaggtatagttgatataagctatatttgacatgtacaattccataagctttgatatatacatatacac-ccttgaaaacga-taccac-aatcatgatagtgaatatattcatctccc--aacgtttcttcatgtccctctgt---aattttctgcattccccctgccatccgtccttgt-ccccaagattagtttgcattttctagagttgtatataagtggaatc-atacagaactgtgtgctttttgg--actga--tttatttcagcacaattatttggagattaatctatgctgttgt-acttgttaacagtgtacttccttttcttgctgaatattaataaaactgtggatgcaccacggttGTAGACCTGTGCACTTTTT s panTro4.chr2A 22210124 469 - 113622374 CAGGTGAAATTGTTCAAGTTTACTACTAAACC---AGGAATAAGGAAGCTTAGATTCTCGTCC-TTTTTTCAAAAAGAAAAAttttaaaaccaggcttattgaggtatagttgatataagctatatttgacatgtacaattccataagctttgatatatacatatacac-ccttgaaaacga-taccac-aatcatgatagtgaatatattcatctccc--aacgtttcttcatgtccctctgt---aattttctgcattccccctgccatccatccttgt-ccccaagattagtttgcattttctagagttgtatataagtggaatc-atacagaactgtgtgcttttggg--actga--tttatttcagcacaattatttagagattaatctatgctgttgt-acttgttaacagtgtacttccttttcttgctgagtattaataaaactgtggatgcaccacggttGTAGACCTGTGCACttttt i panTro4.chr2A C 0 C 0 s ponAbe2.chr7 7581950 476 - 157549271 CACGTGAAATTGTTCAAGTTTACTACTAAACC---AGGAATAAGGAAGCTTAGATTCTTGTCC-TTTTTTCAAAAAGAAAAAttttaaaaccaggcttattgaggtatagttgatatcagctatatttgacatgtacagttctataagctttgatat----atatacac-ccttgaaaacgattaccacaaatcatgatagtgaatatattcattctcccaaaagtttcttcatgccccctcttgtaaattttctgcattccccctgccatccatctttatcccccaagagtagtttgcattttctagagttgtatataagtggaatcaatacagaactgtacgctttttgggaactga--tttatttcagcacaattatttggagattcatctatgctgttgc-atttgttaacagtgtactcccttttcttgctgagtattaataaaactgtgggtgcaccatggttGTAGACCTGTGCGCTTTTT i ponAbe2.chr7 C 0 C 0 s nomLeu3.chr13 7280878 467 - 110113093 CAGTTGAAATTATTCAAGTTTACTACTAAACC---AGGAATAAGGAAGCTTAGATTCTCATCC-CTTTTTCAAAAAGAAAAAttttaaaaccaggcttattgaggtatagttgatataagctatatttgacatgtacaatttcataagctttgatatat--atatacac-ccttgaaaataa-taccac-aatcatgatagtgaatatattcatctccc--aaagtttcttcatgcccctctgt---aattttctgcattccctctgccatccgtccttgt-ccccaagatcagtttgcattttctagagttgtatataagtggaata-gtacagaactgtatgctttttgg--actga--tttatttcagcacaattatttggagattcatctatgctgttgg-atttgttaacagtgtactaccttttcttgctgagtattaataaaactgtggatgcaccacggttGTAGACCTGTGCACttttt i nomLeu3.chr13 C 0 C 0 s rheMac3.chr3 7190270 471 - 198365852 CAAGTGAAATTGTCCAAGTTTACTACTAAACCAGGAGGAGTAAGGAAGCTTAGATTCTTGTCC-TTTTTTCAAAAAGAAAAAttttaaaacaaggcttattgaggtatagttgatataagctatatttgacatgtacaattccataagctttgatatat--gtatacac-ccttgaaaacga-aaccac-aatgatgatagtgaatatattcatctccc--aaagtttcttcatgcccctctgt---aattttctgcatttcccctgccatccgtcctcgt-ccccaagattagtttgcattttctagagttgtatgtaagtggaatc-atacagaattgtatgctttttgg--actga--tttatttcagcacaattatttggaaattcatctatgctgttgccgtttgttaacagtgtactcccttttcttgctgagtattaataaaactgtgtatgcaccacggttGTAGACCTGTGCACTTTTT i rheMac3.chr3 C 0 C 0 s macFas5.chr3 7355763 471 - 192294377 CAAGTGAAATTGTCCAAGTTTACTACTAAACCAGGAGGAGTAAGGAAGCTTAGATTCTTGTCC-TTTTTTCAAAAAGAAAAAttttaaaacaaggcttattgaggtatagttgatataagctatatttgacatgtacaattccataagctttgatatat--gtatacac-ccttgaaaacga-aaccac-aatgatgatagtgaatatattcatctccc--aaagtttcttcatgcccctctgt---aattttctgcatttcccctgccatccgtcctcgt-ccccaagattagtttgcattttctagagttgtatgtaagtggaatc-atacagaattgtatgctttttgg--actga--tttatttcagcacaattatttggagattcatctatgctgttgccgtttgttaacagtgtactcccttttcttgctgagtattaataaaactgtgtatgcaccacggttGTAGACCTGTGCACttttt i macFas5.chr3 C 0 C 0 s papAnu2.chr3 6920411 471 - 180432695 CAAGTGAAATTGTCCAAGTTTACTACTAAACCAGAAGGAGTAAGGAAGCTTAGATTCTTGtcc-ttttttcaaaaagaaaaattttaaaacaaggctTATTGAGGTATAGTTGATATAAGCTATATTTGACATGTACAATTCCATAagctttgatatat--gtatacac-ccTTGAAAACGA-AACCAC-AATGATGATAGTGAATATATTCATCTCCC--AAAGTTTCTTCATGCCCTTCTGT---AATTTTCTGCATTCCCCCTGCCATCCGTCCTCGT-CCCcaagattagtttgcattttctagagttgtatgtaagtggaatc-atacagaatTGTATGCTTTTTGG--ACTGA--TTTATTTCAGCACAATTATTTGGAGATTCATCTATGCTGTTGCTGTTTGTTAACAGTGTACTCCCTTTTCTTGCTGAGTATTAATAAGACTGTGGATGCACCACGGTTCTAGAcctgtgcacttttt i papAnu2.chr3 C 0 C 0 s chlSab2.chr21 6820248 465 - 127223203 CAGGTGAAATTGTTCAAGTTTACTACTAAACCAGAAGGAGTAAGGAAGCTTAGATTCTTGTCC-TTTTTTCAAAAA-AAAAAttttaaaaccaggcttattgaggtatagttgatataagctatatttgacatgtacaattccataagctttgatatat--gtatacac-ccttgaaaacga-taccac-aacgatgatagtgaatatattcatctccc--aaagtttcttcatgccgcgctgt---aattttctgcattccccctgccatccatcctcgt-ccccaagattagtttgcattttctagagttgtatgtaagtggaatc-atacagaattgtacgctttttgg--actga--tttatttccgcacaattatttggagattcatctatgctgttgc-----gttaacagtgtactcccttttcttgctgagtattaataaaactgtggatgcaccacggttGTAGACCTGGGCACTTTTT i chlSab2.chr21 C 0 C 0 s calJac3.chr8 94483356 461 + 128169293 CAGGTGAAATTGTTCAAGTTTACTACTAAACC---AGGAGTAAGGGAGCTTAGATTCTTGTCCTTTTTTTCAAAAAGGAAAAAttttaaagcaggcttattgaggtatagttgatataagctatgtttgacatgtataatttcttaagttttgatatat--gtatccacaccttgaaaacca-taccac-aatcatgatagtgaatatattcatctccc--aaagtttctttatgcccctctgc---aa----------cccccctgccgtccattgttgt-ccccaagattagtttgcattttctagagttgtatataagtggaatc-atacagaattgtacactttttgg--actgattttttttttaacacaattgttttgagattcttctatgctgctgc-atttgttaacagtgcactcctttttgttgctgattattaataaaactgtggatgcaccacggttGTAGACCTGTGCACTTTTT i calJac3.chr8 C 0 I 8 e canFam3.chr16 43584035 2406 - 59632846 I a score=14890.000000 s hg38.chr1_KI270765v1_alt 175619 25 + 185285 TTCCTCCttttt----t-----tttttttttttt s panTro4.chr2A 22210593 25 - 113622374 tttcttcttttt----t-----tttttttttttt i panTro4.chr2A C 0 C 0 s ponAbe2.chr7 7582426 29 - 157549271 TTTTTtttctttcttct-----ttattttttatt i ponAbe2.chr7 C 0 C 0 s nomLeu3.chr13 7281345 16 - 110113093 ttc-------------t-----tcttcttttttt i nomLeu3.chr13 C 0 C 0 s rheMac3.chr3 7190741 17 - 198365852 TTTt------------t-----ttccttcttttt i rheMac3.chr3 C 0 C 0 s macFas5.chr3 7356234 17 - 192294377 tttt------------t-----ttccttcttttt i macFas5.chr3 C 0 C 0 s papAnu2.chr3 6920882 17 - 180432695 tttt------------t-----ttccttcttttt i papAnu2.chr3 C 0 C 0 s chlSab2.chr21 6820713 22 - 127223203 TTTT------------TTTTCCttcttttttttt i chlSab2.chr21 C 0 C 0 e calJac3.chr8 94483817 8 + 128169293 I e canFam3.chr16 43584035 2406 - 59632846 I a score=1376997.000000 s hg38.chr1_KI270765v1_alt 175644 493 + 185285 ttttctgagacaggttctcgttctaattcct-ggctggagtgcagtggtgcgatcatagctaactccagctttgacctcccacctctgtctcacaagtagctgggaccatagctgtgtgcc------aacacacccaactacttttttaaaatttttaatagagacagcatctcactatgttgtccaggctggtctcgaacttctgagctcaagcaattttcccaccttggcttcccaaaatgctgggattacaggcatgagtcaccatgcccCAgcctgtagtcttaatttcttgtaatgtcttcatctggttttggtatcagcataactccagcttcatagaatgaatcag---aaagtatattctcatcttcagttttctggaaaagttgtgtagtagtggaaatgtatctt-cttatattatacatgaatttattagtgaaaccatcttggcctgaaatttt--ctttgtgggg-gg---tttttgttgt--gttttc--tttttttttt s panTro4.chr2A 22210618 493 - 113622374 ttttctgagacaggttcttgttctaattcct-ggctggagtgcagtggtgcgatcatagctaactccagctttgacctcccacctctgtctcccaagtagctgggaccatagctgtgtgcc------aacacacccaactacttttttaaaatttttaatagagacagcatctcactatgttgtccaggctggtctcgaacttctgagctcaagcaattttcccaccttggcttcccaaaatgctgggattacaggcgtgagtcaccatgcccCAgcctgtagtcttacactcttgtaatgtcttcatctggttttggtatcagcataactccagcttcatagaatgaatcag---aaagtatattctcatcttcagttttctggaaaagttgtgtagcagtggaaatgtatctt-cttatattatacatgaatttattagtgaaatcatcttggcctgaaatttt--ctttgtgggg-gg---tttttgttgt--gttttc--tttttttttt i panTro4.chr2A C 0 C 0 s ponAbe2.chr7 7582455 502 - 157549271 ttttctgagacaggttctcgttctaattcctgggctggagtccactggtgcgatcatagctaactccagcttcgacctcccacctccatctcccaagtagctgggaccataggtgtgtgcc------accacacccaactgctttttaaaaatttttaatagagacagcatctcactatgttgtccaggctggtctcgaacttctgagctcaagcaattttcccaccttggcttcccaaagtgctgggattacaggcctgagtcaccatgcccCAgcctgtagtcttacattcttgtaatgtcttcatctggttttggtatcagcataactccagcttcatagaatgaatcaggatgaagtatattctcctcttcagttttctggaaaagttgtgtagtagtggaaatgtatctt-cttttcttatacatgaatttattagcgaaaccatcttggcctgaaatttttcttttgtgggg-gggttttttggttgt--gtgttc--tttttttttt i ponAbe2.chr7 C 0 C 0 s nomLeu3.chr13 7281361 480 - 110113093 ttttctgagacaggttctcattctaattcctgggctggagtgcagtggtgcgatcatagctaactccagcttcgacctcctacctccgtctcccaagtagctgggaccataggtgtgtgcc------accacacccaactactttttaaaaatttttaatagagacagcatctcactatgttgtccaggctggtctcgaacttctgagctcaagcaattttcccaccttggcttcccaaagtgctgggattacaggcgtgagtcaccatgcccCAgcctgtagtcttacattctcgtaatgtctttgtctggttttggtatcagcataactccagcttcatagaatgaatctg---gaagtatattctcctcttcagttttctggaaaagttgtgtagtagtggaaatgtatctt-cttatattatacatgaatttattagtgaaaccatcttggcctggaatttt--ctttgtgggg------tttt----------------ttTTTTTATT i nomLeu3.chr13 C 0 I 1196 s rheMac3.chr3 7190758 499 - 198365852 ttttctgagaaaggttcttgttctaattcctgggctggagtgcagtggtatgatcatagctcactccagattcgacctcccacctccatctcccaagtagccgggaccataggtgtgtgtcctactacatacatccaactaccttttaaaaatttttaatagagacagcatctcactatgttgtccaggctggtctcgaacttctgagctcaagcagtttccccaccttggcttccaaaagtgctgggattacagccatgagtcaccatgcccCAgcctgtagtcttacattcttgtaatgtcttcgtctggttttggtatcagcgtaactccagcttcttagaatgaatcag---gaagtatattctcctcttcagttttctggaaaagttgtgtagtagtggaaatatttctt-cttatattatacatgaatttattagtgaaaccgtcttggcctgaaatttt--ctttgtggggtgg---tttttgtttt--gttttctttttttt---- i rheMac3.chr3 C 0 C 0 s macFas5.chr3 7356251 497 - 192294377 ttttctgagacaggttcttgttctaattcctgggctggagtgcagtggtatgatcatagctcactccagattcgacctcccacctccatctcccaagtagccgggaccataggtgtgtgtcctactacatacatccaactaccttttaaaaatttttaatagagacagcatctcactatgttgtccaggctggtctcgaacttctgagctcaagcagttttcccaccttggcttcccaaagtgctgggattacagccatgagtcaccatgcccCAgcctgtagtcttacattcttgtaatgtcttcgtctggttttggtatcagtgtaactccagcttcttagaatgaatcag---gaagtatattctcctcttcagttttctggaaaagttgtgtagtagtggaaatatttctt-cttatattatacatgaatttattagtgaaaccgtcttggcctgaaatttt--ctttgtggggtgg---tttttgtttt--gttttc--tttttt---- i macFas5.chr3 C 0 C 0 s papAnu2.chr3 6920899 495 - 180432695 ttttctgagacaggttcttgttctaattcctgggctggagtgcggtggtatgatcatagctcactccagaTTCGAcctcccacctccgtctcccaagtagctgggaccataggtgtgtgtCCTACTACATACAtccaactactttttaaaaatttttaatagagacagcatctcactatgttgtccaggctggtctcgaactactgagctcaagcagttttcccaccttggcttcccaaagtgctgggattacagccatgagtcaccgtgccccaGCCTGTAGTCTTACATTCTTGTAATGTCTtcgtctggttttggtatcagctTAACTCCAGCTTCTTAGAATGAATCAG---GAAGTATATTCTCCTCTTCAGTTTTCTGGAAAAGTTGTGTAGTAGtggaaatatttctt-cttatattATACATGAATTTATTAGTGAAACTGtcttggcctgaaatttt--ctttgtggggtgg---tttttgtttt--gttttc----tttt---- i papAnu2.chr3 C 0 C 0 s chlSab2.chr21 6820735 490 - 127223203 ttttctgagacaggttcttgttctaattcctgggttggagtgcggtggtgtgatcatagctcactccagattcgacctcccacctccgtctcccaaggagctgggaccataggtgtgtgtcctactacatacatccaactgctttttaaaaatttttaatagagacagcatctcactatgttgtccaggctggtctcgagcttctgagctcaagcagttttaccaccttggcttcccaaagtgctgggattacggccatgagtcaccatgcccCAgcctgtagtcttacattcttgtaatgtcttcgtctggttttggtatcagcgtaactccagcttcttagaatgaatcag---gaag-atattctcctcttcagttttctggaaaagttgtgtagtagtggaaatatttctt-cttatattatacatgaatttattagtgaaaccatcttgacctgaaatttt--ctttgtggggtgg---tttttgtttt----------ttcttt---- i chlSab2.chr21 C 0 C 0 s calJac3.chr8 94483825 487 + 128169293 ttttctgagacagggtctcat-----tttccaggctggagtgcagtggtgtgattatagttcactccagcttcgacctctcacccccgtttcccaggtagctgggaccataggtatgcacc------accccacccagctaatttttaaaaa-ttttaatggagacaatgtcttgctatgatgtccaggctggtcttgaacttctgagctcaagcagttcttccgccttggcttcccaaagtgatgggcttacaggcatgagtcatcat-ccctggcctgtagtcttacattcttgtaatgttttcatctgattttgatatcagcataattccagcttcatagaatgaatcag---gaaggatattctcctcctcagttttctggaaaagttgtgtagtagtgcaaacgtttcttccttatattatacgtgaatttattggtgaaagcatcttggcctgaaatttt--ctttgtaggatgg---tgtttgttttctgttttt--tttttt---- i calJac3.chr8 I 8 C 0 e canFam3.chr16 43584035 2406 - 59632846 I a score=53476.000000 s hg38.chr1_KI270765v1_alt 176137 22 + 185285 tttttctttcttttgagatgga s panTro4.chr2A 22211111 21 - 113622374 cttt-ctttcttttgagatgga i panTro4.chr2A C 0 C 0 s ponAbe2.chr7 7582957 19 - 157549271 tt---ctttcttttgagatgga i ponAbe2.chr7 C 0 C 0 s nomLeu3.chr13 7283037 22 - 110113093 tttttctttcgtttgagatgga i nomLeu3.chr13 I 1196 C 0 s rheMac3.chr3 7191257 22 - 198365852 tttttttgtcttttGAGATGGA i rheMac3.chr3 C 0 I 27 s macFas5.chr3 7356748 22 - 192294377 tttttttgtcttttgagatgga i macFas5.chr3 C 0 C 0 s papAnu2.chr3 6921394 22 - 180432695 tttttttgtcttttgagatgga i papAnu2.chr3 C 0 C 0 s chlSab2.chr21 6821225 22 - 127223203 tttttttttcttttgagatgga i chlSab2.chr21 C 0 C 0 s calJac3.chr8 94484312 22 + 128169293 tttctttttcttttgagacgga i calJac3.chr8 C 0 C 0 e canFam3.chr16 43584035 2406 - 59632846 I a score=290682.000000 s hg38.chr1_KI270765v1_alt 176159 150 + 185285 gtttcgc-tcttgttgcctag-gctggagtgcaa--tggcacaatc-tcagctca-tgcaaccactgcctcccaggttcaagtgattc-ccctgcc-tcagccccctgggtagctgggatta-catgtgcctgccaccatgcctggctatttttttttt s panTro4.chr2A 22211132 150 - 113622374 gtttcgc-tcttgttgcctag-gctggagtgcaa--tggcacaatc-tcagctca-tgcaaccactgcctcccaggttcaagtgattc-ccctgcc-tcagccccctgggtagctgggatta-catgtgcctgccaccatgcctggctaattttttttt i panTro4.chr2A C 0 C 0 s ponAbe2.chr7 7582976 157 - 157549271 gtttctcttcttcttgcgtagagctggagtgcaaatgggcacaatcttcagctca-tgcaaccactgcctcccaggttcaagtgattctccctgcctttagccccctgggtagctgggatta-caggtgcctgccagcacgcctggctaattttttttt i ponAbe2.chr7 C 0 C 0 s nomLeu3.chr13 7283059 148 - 110113093 gttttgc-tcttgttgcctag-gctggagtgcaa--tggtgcaatc-tcagctca-tgcaaccgttgcctcccaggttcaagtgattc-ccctgcc-tcagccccctgggtagctgcgtttatcaggtgcctgccaccacgcctggctaatttttt--- i nomLeu3.chr13 C 0 C 0 s macFas5.chr3 7356770 150 - 192294377 atttcgc-tcttgttgcccag-gctggattgcaa--tggcgcgatc-tcgactca-tgcaactgccgcctcccaggttcaagtgattc-ccctgcc-tcagccccctgagtagctgggatta-caggtgcccgccaccacgcctggctaattttttttt i macFas5.chr3 C 0 C 0 s papAnu2.chr3 6921416 141 - 180432695 atttcgc-tcttgttgcccag-gctggattgcaa--tggtgcgatc-tcgactca-tgcaactgccgcctcccaggttcaagtgattc-ccctgcc-tcagccccctgagtagctgggatta-caggtgcccaccaccacgcctggctaa--------- i papAnu2.chr3 C 0 C 0 s chlSab2.chr21 6821247 141 - 127223203 atttcgc-tcttgttgcccag-gctggattgcaa--tggcgcgatc-tcgactca-tgcaactgccacctcccaggttcaagtgattc-ccctgcc-tcagccccctgagtagctgggatta-caggtgcccgccaccacacctggctaa--------- i chlSab2.chr21 C 0 C 0 s calJac3.chr8 94484334 151 + 128169293 atttcac-tcttgttgcccaa-gctgcagggcca--tggtgcgatt-tcaactcactgcaacctctgcctcccaggttcaagtgattc-tcctgcc-tcagcctcctgagtagctgggatta-caggagcctgttgccatgcccaactaattttttttt i calJac3.chr8 C 0 C 0 e rheMac3.chr3 7191279 27 - 198365852 I e canFam3.chr16 43584035 2406 - 59632846 I a score=1086769.000000 s hg38.chr1_KI270765v1_alt 176309 382 + 185285 -tttttttttgtatttttagtagagacagtttttcaccatgttggccaggctggtctcgaactcctgacctcatgtgatccacctgccttggcctcccaaagtgttgggattacaggcatgagccaccatgcccaggctggagtgcagtggcgtgatctctgctcactacagcctccacctcccaggttcaagcaattctcctgcctcagccttctgagtagctgggattactggcatgcaccaacatgcctagctaatttttgtgttttgggtagagatggggttttgccatgttggccaggctggtctcgaactcctgacc-tcaggtgatcc--------------atctcccaaagtgctaggattatgggatgagccactggtgcccag-cctg s panTro4.chr2A 22211282 379 - 113622374 -tttttt---gtatttttagtagagacagtttttcaccatgttggccaggctggtctcgaactcctgacctcatgtgatccacctgccttggcctcccaaagtgttgggattacaggcgtgagccaccatgcccaggctggagtgcagtggcatgatctctgctcactacagcctccacctcccaggttcaagcaattctcctgcctcagccttctgagtagctgggattactggcatgcacaaacatgcctagctaacttttgtgttttgggtagagatggggtttcgccatgttggccaggctggtctcgaactcctgacc-tcaggtgatcc--------------atctcccaaagtgctgggattatgggatgagccactggtgcccag-cctg i panTro4.chr2A C 0 C 0 s ponAbe2.chr7 7583133 376 - 157549271 -tt-------gtatttttagtggagacagtttttcaccatgttggccaggctggtctcgaactcctgacctcaggtgattcatctgcctcggcttcccaaagtgttgggattataggcgtgagccaccatgcccaggctggagtgcagtggcatgatctctgctcaccacagcctccacctcccaggttcaagcaattctcctgcctcagccttctgagtagctgggattactggcgtgcaccaacatgcctggctaatttttgtgttttgggtagagatggggtttcgccatgttggccaggctggtctcgaactcctggccttcaggtgatcc--------------gtctcccaaagtgctgggattacgggatgagccaccggcgcccag-cctg i ponAbe2.chr7 C 0 C 0 s nomLeu3.chr13 7283207 373 - 110113093 ----------gtatttttagtagagacagtttttcaccatgttggccaggctggtcttgaactcctgacctcaggtgatccacctgccttggcctcccaaagtgttgggattacaggcatgagccaccatgcccaggctggagtgtagtggcgtgatctctgctgaatacagcctccacctcccaggttcaagcaattctcctgcctcagtcttctgagtagctgggattactggcgtgcaccaacatgcctggctaatttttgtgttttgggtagagatggggtttcgccatgttggccaggctggtctcgaactcctggcc-tcaggtgatcc--------------gcctcccaaagtgctgggattacgggatgagccaccggcgcccag-cctg i nomLeu3.chr13 C 0 C 0 s rheMac3.chr3 7191306 381 - 198365852 -tttttttttgtatttttagtagagacaatttttcaccatgttggccaggctggtctcaaacttccgatctcaggtgatccacctgccttggcctcccaaagtgttgggattacaggcgtgagccaccgcgctcaggctggagtgcagtggagtgatctccgctcactgcagcctccacctctcaggttcaagcaattctcctgcctcagccttctgagtagctgggattacaggtgtgcaccaacatgcccggccaatttttgtgtttttggtagagatggggtttcgccatgttggccaggctggtctcgaactcctggcc-tcagatgatcc--------------gactcccgaagtgctgggattacaggatgagccatc-gcgcccag-ccta i rheMac3.chr3 I 27 C 0 s macFas5.chr3 7356920 372 - 192294377 ----------gtatttttagtagagacaatttttcaccatgttggccaggctggtctcaaacttccgatctcaggtgatccacctgccttggcctcccaaagtgttgggattacaggcgtgagccaccgcgctcaggctggagtgcagtggagtgatctccgctcactgcagcctccacctcccaggttcaagcaattctcctgcctcagccttctgagtagctgggattacaggtgtgcaccaacatgcccggccaatttttgtgtttttggtagagatggggtttcgccatgttggccaggctggtctcgaactcctggcc-tcagatgatcc--------------gactcccgaagtgctgggattacaggatgagccacc-gcgcccag-ccta i macFas5.chr3 C 0 C 0 s papAnu2.chr3 6921557 381 - 180432695 -tttttttttgtatttttagtagagacaatttttcaccatgttggccaggctggtctcgaacttccgatctcaggtgatccacctgccttggcctcccaaagtgttgggattacaggcgtgagccaccgtgctcaggctggagtgcagtggagtgatctccgctcactgcagcctccacctcccaggttcaagcaattctcctgcctcagccttctgagtagctgggattacaggtgtgcaccaacatgcccggctaatttttgtgtttttggtagagatggggtttcgccatgttggccaggctggtctcgaactcctggcc-tcagatgatcc--------------gactcccaaagtgctgggattacaggatgagccacc-gcgcccag-ccta i papAnu2.chr3 C 0 C 0 s chlSab2.chr21 6821388 381 - 127223203 -tttttttttgtatttttagtagagacagtttttcaccatgttagccaggctggtctcgaacttccgatctcaggtgatccacctgccttggcctcccaaagtgttgggattacaagcgtgagccactgtgctcaggctggagtgcagtggagtgatctccgctcactgcagcctccacctcccaggttcaagcaattctcctgcctcagccttctgaggagctgggattacaggtgtgcaccaacatgcccagctaatttttgtgtttttggtggagatggggtttcgccatgttggccaggctggtcttgaactcctggcc-tcagatgatcc--------------gactcccgaagtgctgggattacaggatgagccacc-gcgcccag-ccta i chlSab2.chr21 C 0 C 0 s calJac3.chr8 94484485 388 + 128169293 tttttttttggtatttttagtagagacagggtttcaccatgttggccaggttgatcatgaactcttgactaaaggggatccacctgtctcagcctcccaaggtgctg---------gcatgagccaccttacccagtctgtagtgcagtggtgtgatctccacgcactgcaatcttcaactcctgggttcaagcgattctcccacctcagccttctgagtaggtgggattacaggtgcacaccaacatgcctggctaatttttgtgtttttggtagagatagggttttgctatgttggccaggctggtctggaactcctggcc-ttagatgattcattcgcctgccttggcctcccaaaatgctgggattacaaggtgagtcacc-acacccaaccctg i calJac3.chr8 C 0 C 0 e canFam3.chr16 43584035 2406 - 59632846 I a score=1286207.000000 s hg38.chr1_KI270765v1_alt 176691 391 + 185285 tgggacagtttttaacaacaaattttatttctttaataggtac---ctatttaggttatctgtctctccttgcataaatttgcacctttcaagaaatttgttcattttgtctatcttgacaaattaaaggaatggagttgatcataatgtttcttattattttaatacctgtagaatctgtagtgatttcaccttcctcattcttgatactaataatttgtatcttgtcttatttttttcctgatcagtctggctagagatttatcaatcttattgatcttcttgagtcagcctttgttttcatggacttttctctattttctttcccctttct---gttttattgatttatattctcatctttattttttcctatcttctcactttgagtttagtt s panTro4.chr2A 22211661 391 - 113622374 tgggacagtttttaacaacaaattttatttctttaataggtac---ctatttaggttatctgtctctccttgcataaatttgcacctttcaagaaatttgttcattttgtctatcttgacaaattaaaggaatggagttgatcataatgtttcttattattttaatacctgtagaatctgtagtgatttcaccttcctcattcttgatactaataatttgtatcttgtcttatttttttcctgatcagtctggctagagatttatcaatcttattgatcttcttgagtcagcctttgttttcatggacttttctctattttctttcccctttct---gttttattgatttatattctcatctttattttttcctatcttctcactttgagtttaatt i panTro4.chr2A C 0 C 0 s ponAbe2.chr7 7583509 381 - 157549271 tgggacagtttttaacaacaaattttatttctttaataggtac---ctatttaggttatctgtctctccttgcataaatttgcatctttcaagaaatttgttcattttgtctatcttgac-----aaaggaatggagttgatcataatgtttcttattattttaatacctgtagaatctgtagtgatttcaccttcctcattcttgatattaataatttgta-----tcttatttttttcctgatcagtctggctagagatttatcaatcttattgatcttcttgagtcagcctttgttttgatggactttcctctattttctttcccctttct---gttttattgatttatattctcatctttattttttcttatcttctcactttgagtttaatt i ponAbe2.chr7 C 0 C 0 s nomLeu3.chr13 7283580 389 - 110113093 tgggacggtttttaacaacaaattttatttctttaataggtac---ctatttaggtta--tgtctctccttgcataaatttgcatctttcaagaaacttgttcattttgtctatcttgacaaattaaaggaatggagttggtcataatgtttcttattattttgatacctgtagaatctgtagtgatttcaccttcctcattcttgatattaataatttgtatcttgtcttatttttttcctgatcagtctggctagagatttatcaatcttactgatcttcttgagtcagcctttgttttcatggacttttctctattttcttttccctttct---gttttattgatttatattcgcatctttattttttcctatcttctcactttgagtttaatt i nomLeu3.chr13 C 0 C 0 s rheMac3.chr3 7191687 389 - 198365852 tgggacagtttttagcaacaaattttctttctttaataggtac---ctatttaggttatctgtctccccttgcataaatttgcatctttcaagagatttgttcattttgtctatcttgacaaattaaaggaatggagttgatcatagtatttcttactattttaatacctgtagaatctgtagtgatttcaccttccttattctcaatactaataatttgtatcttgtcttatttttttcctgataagtctggctagagatttatcaatcttattgatcttcttgagtcagcctttgttttcatggacttttctctattttctttccccgttct---gttttattgatttatatcctcatc--tattttttcctatcttctcactttgagtttaatt i rheMac3.chr3 C 0 C 0 s macFas5.chr3 7357292 389 - 192294377 tgggacagtttttagcaacaaattttctttctttaataggtac---ctatttaggttatctgtctccccttgcataaatttgcatctttcaagagatttgttcattttgtctatcttgacaaattaaaggaatggagttgatcataatatttcttactattttaatacctgtagaatctgtagtgatttcaccttccttattctcaatactaataatttgtatcttgtcttatttttttcctgatcagtctggctagagatttatcaatcttattgatcttcttgagtcagcctttgttttcatggacttttctctattttctttccccgttct---gttttattgatttatatcctcatc--tattttttcctatcttctcactttgagtttaatt i macFas5.chr3 C 0 C 0 s papAnu2.chr3 6921938 384 - 180432695 tgggACAGTTTTTAGcaacaaattttctttc-ttaataggTAC---CTATTTAGGTTATCTGTCTCCCCTTGCATAAATTTGCATCTTTCAAGagatttgttcattttgtctATCTTGACAAAT----GGAATGGAGTTGATCATAATATTTCTTACTATTTTAATACCTGTAGAATCTGTAGCGATTTCACCTTCCTTATCCTCAATACTAATAATTTGCatcttgtcttatttttttcctgatcagTCTGGCTAGAGATATATCAATCTTACTGATCTTCTTGAGTCAGCCTTTGTTTTCATggacttttctctattttctttccccgttct---gttttattgatttatatccTCATC--TATTTTTTCCTATCTTCTCACTTTGAGTTTAATT i papAnu2.chr3 C 0 I 314 s chlSab2.chr21 6821769 389 - 127223203 tgggacagtttttagcaacaaattttctttctttaataggtac---ctatttaggttatctgtctccctttgcataaatttgcatctttcaagagatttgttcattttgtctatcttgacaaataaaaggaatggagttgatcataatatttcttactattttaatacctgtagaatctgtagtgatttcaccttccttattctcaatactaataatatgtatcttgtcttacttttttcctgattagtctggctagagatttatcaatcttattgatcttcttgagtcagcctttgttttcatggacttttctctattttctttcccctttct---gttttattgatttatatcctcatc--tatgttttcctatcttctcactttgagtttaatt i chlSab2.chr21 C 0 C 0 s calJac3.chr8 94484873 389 + 128169293 tggggtggattttaacaacaaattttgtgtctttaataggtac---ctatttaggttat-tatttcccctttcataaatttgcatctttcaggaaatttgttcattttgtctaacttgacaaattaaaggaatagagttgataataatatttattattattttagttactgtagaatctgtagtgatgtcaccttccttattcttgatactaataatttgtatcttgccttatttttttcctgatcagtcttactagagatgtatcaattttattaatcttcttgagtcagccttt-ttttcatggactcttctctgtgttctttttcctttct---gttttattgatttatattctcatctttattttttcctttcttctcagtttgagtttaatt i calJac3.chr8 C 0 C 0 s canFam3.chr16 43586441 358 - 59632846 tggaaagattcttaactatatattcagtttctctggtaggtatgtgctatttaggttatctat----ccttatacgaatttg--tctttcaaggaatttgtccatttcatgtaagttgacaaatcta----------ttggcc--------tattatccttataatatctgtagaatatgtaatgatgtcgccttcctcattcccaatattggtgatgtgtgtc-----------ttttcctggttggtcttgctgcaggtttctcaatcttat---tcatcttgagccagcttttgctttcatttatttttctctgttttttcccctctattttagatttcattgatttccactttgatcttgactgttttct-tcctctcactttgagttcaatt i canFam3.chr16 I 2406 C 0 a score=954132.000000 s hg38.chr1_KI270765v1_alt 177082 336 + 185285 tgatcttctttttttG-TTTACTCTTACGTGTCCCTGCTTGG-AAGG--GACACTTGTGAAGTTTAGGTCAGAGCTTTCTATTCTCCTT-GGCTTATATCTGTGGTCTAGGAAAATGAAATTTCTATCACCTTCT------------------------------GGATAAATCACACTATTATCTATGCAGGCAACAATAGCACATATTTT-------------------------------------------------CTCAAAGATTAC---CTTTGCCCTCAAGTTAGGTTTTATTTTTCTAGCAGTCTAAAGGTCATG-AAATAAATTATAAAATAAAA-ACAGTGGGTCTTCAAGCTAGAGGATACTGTTTTCTTTCTTGCATGGACAA---TTATT-TTAAAATATTTTGGTTTTT-----------------------------------------------------------------------------CTGCA s panTro4.chr2A 22212052 336 - 113622374 tgatcttctttttttG-TTTACTCTTACGTGTCCCTACTTGG-AAGG--GACACTTGTGAAGTTTAGGTCAGAGCTTTCTATTCTCCTT-GGCTTATATCTGTGGTCTAGGAAAATGAAATTTCTATCACCTTCT------------------------------GGATAAATCACACTATTATCTATGCAGGCAACAATAGCACATATTTT-------------------------------------------------CTCAAAGATTAC---CTTTGCCCTCAAGTTAGGTTTTATTTTTCTAGCAGTCTAAAGGTCATG-aaataaattataaaataaaa-aCAGTGGGTCTTCAAGCTAGATGATACTGTTTTCTTTCTTGCATGGACAA---TTATT-TTAAAATATTTTGGTTTTT-----------------------------------------------------------------------------CTGCA i panTro4.chr2A C 0 C 0 s ponAbe2.chr7 7583890 338 - 157549271 tgatcttctttttttG-TTTACTCTTATGTGTCCCTGCTTGGAAAAG--GACACTTGTGAAGTTTAGGTCAGAGCTTTCTATTCTCCTTGGGCTTATATCTGTGGTCTAGGAAAATGAAATTTCTATCACCTTCT------------------------------GGATAAATCACACTATTATCTATGCAGGCAACAATAGCACATATTTT-------------------------------------------------CTCAAAGATTAC---CTTTGCCCTCAAGGTAGATTTTATTTTTCTAGCAGTCTAAAGGTCATGaaaataaattataaaataaaaGACGGTGGATCTTCAAGCTAGATGATACTGTTTTCTTTCTTGCATGGACAA---TTATT-TTAAAATATTT--GTTTTT-----------------------------------------------------------------------------CTGCA i ponAbe2.chr7 C 0 C 0 s nomLeu3.chr13 7283969 336 - 110113093 tgatcttctttttttG-TTTACTCTTATGTGTCCCTGCTTGG-AAGG--GACACTTGTGAAATTTAGGTCAGAGCTTTCTATTCTCCTT-GGCTTATATCTGTGGTCTAGGAAAATGAAGTTTCTATCACCTTCT------------------------------GGATAAATCACACTATTATCTATGCAGGCAACAATAGCACATATTTT-------------------------------------------------CTCATAGATTAC---CTTTGCCCTCAAGGTAGGTTTTATTTTTCTAGCGGTCTAAAGGTCATG-AAATAAATTATAAAATAAAA-ACAGTGGGTCTTTAAGCTAGATGATACTGTTTTCTTTCTTGCATGGACAA---TTATT-TTAAAATATTTTGGTTTTT-----------------------------------------------------------------------------CTGCA i nomLeu3.chr13 C 0 C 0 s rheMac3.chr3 7192076 329 - 198365852 tgatcttctttttttG-TTTACTCTTTTGTGTCCCTGTTTGG-AAGG--GACATTTGTGAAGTTTAGGTCAGAGCTTTCTGT--TCCTT-GACTTACATCTGTGGTCTAAGAAAATGAAATATCTATCACCTTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----------------------------------------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---------------------------------------TTTTCTA-CATTCTAAAGGTCATG-AAACAAATTATAAAATAAAA-ACAGTGGGTCCTCAAGCTAGATGATACTGTTTTCTTTCTTGCATGGACAA---TTATT-TTAAAATATTTTGGTTTTT-----------------------------------------------------------------------------CTGCA i rheMac3.chr3 C 0 C 0 s macFas5.chr3 7357681 332 - 192294377 tgatcttctttttttG-TTTACTCTTTTGTGTCCCTGTTTGG-AAGG--GACATTTGTGAAGTTTAGGTCAGAGCTTTCTGT--TCCTT-GACTTACATCTGTGGTCTAAGAAAATGAAATATCTATCACCTTCT------------------------------GAATAAATCACACTATTATCTATGCAGGCAACAATAACACTTATTTT-------------------------------------------------CTCAAAGTTTAC---CTTTGCCCTCAAGGTAA--TTTATTTTTCTAGCAGTCTAAAGGTCATG-AAATAAATTATAAAATAAAA-ACAGTGGGTCCTCAAGCTAGATGATACTGTTTTCTTTCTTGCATGGACAA---TTATT-TTAAAATATTTTGGTTTTT-----------------------------------------------------------------------------CTGCA i macFas5.chr3 C 0 C 0 s papAnu2.chr3 6922636 332 - 180432695 tgatcttctttttttg-tttactcttttgaGTCCCTGTTTGG-AAGG--AACATTTGTGAAGTTTAGGTCAGAGCTTTCTGT--TCCTT-GACTTATATCTATGgtctaagaaaatgaaatatctatcACCTTCT------------------------------GAATAAATCACACTATTATCTATGCAGGCAACAATAACACttatttt-------------------------------------------------ctcaaagtttaa---CTTTGTCctcaaggtaa--tttatttttctagcagTCTAAAGgtcatg-aaataaattataaaataaaa-acagtgggTCCTCAAGCTAGATgatactgttttctttcttgcatggacaa---ttatt-ttaaaatattttggttttt-----------------------------------------------------------------------------ctgCA i papAnu2.chr3 I 314 C 0 s chlSab2.chr21 6822158 332 - 127223203 tgatcttctttttttG-TTTACTCTTTTGTGTCCCTGTTTGG-AAGG--GACATTTGTGAAGTTTAGGTCAGAGCTTTCTGT--TCCTT-GGCTTATATCTGTGGTCTAAGAAAATGAAATATCTATCACCTTCT------------------------------GAATAAATCACAGTATTATCTATGCAGGCAACAATAGCACTTATTTT-------------------------------------------------CTCAAAGTTTAC---CTTTGCCCTCAAGGTAA--TTTATTTTTCTAGCAGTCTAAAAGTCATG-AAATAAATTATAAAATAAAA-ACAGTGGGTCCTCAAGCTAGATGATACTGTTTTCTTTCTTGCATGGACAG---TTATT-TTAAAATATTTTGTTTTTT-----------------------------------------------------------------------------CTGCA i chlSab2.chr21 C 0 C 0 s calJac3.chr8 94485262 337 + 128169293 tgatcttcatttGTTG-TTTACTCTTATGTGGCCCTGCTTGG-AAGG--GACACTTGTGAACTTCAGATCAGAGCTTTCTATTCTCCTT-GGCTTAGATGTGTGGTCTAGCAAAGTGAAATTTCTATCACCTTCT------------------------------GGATAGATGACAGTGTTAACTATCCAGGCAACAATAGCA--TATTTT-------------------------------------------------CTCAAAGATTAC---CCTTGTCCTCAAGATAGGTTTTATTTTTCTAGCAGTCTAAAGGTCATG-aaataaattataaaataaaa-aCCATGGGCCCTCAAGCTAGATGATACTATTTTCTTTCTTGCATGGACAATTGTTATT-TTAAAATATTTTGTTTTTT-----------------------------------------------------------------------------CTGCA i calJac3.chr8 C 0 C 0 s canFam3.chr16 43586799 412 - 59632846 tgctctcctttttttTCTTTATTTACTTATGTTTTTGCTTGG-AAATCCCCCACTTTTGAGGTTTGGGTTAAAGCTTTCTTTTTTCTTA-GGCTTATATCTGTGGTCCGGCCAAATAAAA---CTGTCACTTTTA------------------------------GGATAAATCAGACTAAGATGTATGTAGGCAATACTAGGAC--ACTGT-------------------------------------------------CTCAAAGATTGCCTTCTTTACCCTTAGGTTAGGGTTTATGTATCTAGTAATTTAAAGGTCATG-AAATAAAGTATAAAATGAAA-ACAGTGGGTCATTAAGCTACATGATAGTGTTTTC---CTTACACATGCAA---TTGCTGTTTAAAAACCTTGATTTTTGgggatccctgggtggctcagagatttagcatctgccttcggcccagggaatgatcctggggtcccgggatcgagtcctgca i canFam3.chr16 C 0 I 126 a score=2846476.000000 s hg38.chr1_KI270765v1_alt 177418 933 + 185285 CTTATTATTTAAATATGACTCCCCACC---CCCACTTGAATCTA-GGGACATTGTAGTTTTCTACTGCAGACTTTGTTTCTGGTTTATACTGGGAATA-----------TATTGTTTATCATTTTCAGTGAAAGCATCCACTGGTTAAATTTCCTTTTAAAAATAATAATGGACCTTTACAATTTCTTTGAG-CTGCTCAGTGTGTATAA---------------TGTGTTGAATTTTCTGTTAGTGGTTGGGAGGTAGAAATAGATACTT---------------------TATCTCTATTTTAGCCATTTCCATAATTATATATCTCAATAACCTTGTCAATGCATCATTAGTCCTATGACTGAATTAATGA-----TTACTTTTAGTAGTCACTTAGTTTCTTACTGGTG--ATGATGATTCTACTTTTGTGAATCATCTTGGATGATTCTCTAAAATCTTAGAAAGCTAATTTTGTTAATGCTATGC-------------------------------------------ATACAA----------------------------------------------------------------------------------------------------------------------------CACATC----AATACATTTTCTCTATTAAAAAAATTAAAGC-GTT---ATAGGTAGATCAGAATTTACCATTACTAACTCCTCAAGTCCTC-CTTATTTCCCTGTTACCAGTTTGGTATATTTAT-ATAttaggttgatccatatgaaattgccaatatt-----atttctgaactgatgaaaagcagcaatttcttatgattcaacctaTTGTatgtgcccatagactacatataatgactttgcatgttt-----ttatattatagtgctatacctcaaatactgttctgcaatttattttttca-tcaacaacgtcttttgataa--------tttctttcatggcagtctatacaagtttctacctccctacttttaaaatgttgcgtaattttctaatgttt-ggatttgtcatggctttacttactccctaatgatgaatatt-GGCATTATTAACA-------CTTGTAGTCATTAGGGTTCATATG-AATATAAATTGCTCTT---------------ATAAAGCATTAGTACT-ATCCATT s panTro4.chr2A 22212388 933 - 113622374 CTTATTATTTAAATATGACTCCCCACC---CCCAGTTGAATCTA-GGGACATTGTAGTTTTCTACTGCAGACTTTGTTTCTGGTTTATACTGGGAATA-----------TATTGTTTGTCATTTTCAGTGAAAGCATCCACTGGTTAAATTTACTTTTAAAAATAATAATGGATCTTTACAATTTCTTTGAG-CTGCTCAGTGTGTATAA---------------TGTGTTGAATTTTCTGTTAGTGGTTGGGAGGTAGAAATAGATACTT---------------------TATCTCTATTTTAGCCATTTCCATAATTATATATCTCAATAGCCTTGTCAATGCATCATTAGTCCTATGACTGAATTAATGA-----TTACTTTTAGTAGTCACTTAATTTCTTACTAGTG--ATGATGATTCTACTTTTGTGAATCATCTTGGATGATTCTCTAAAATCTTAGaaagctaattttgttaatgctatgc-------------------------------------------atataa----------------------------------------------------------------------------------------------------------------------------cacatc----aatacattttctctattaaaaaaattaaagc-att---ataggtagatcagaatttaccattactaactcctca-gtcctc-cttatttccctgttaccagtttggtatatTTAT-ATAttaggttgatccatatgaaattgccaatatt-----atttctgaactgatgaaaagcagcaatttcttatgattcaacctaTTatatgtgcccatagactacatataatgactttgcatgttt-----ttatattatagtgctatacctcaaatactgttctgcaatttattttttcactcaacaacgtcttttgataa--------tttctttcatggcagtctatacaagtttctacctccctacttttaaaatgttgcgtaattttctaatgttt-ggatttgtcatggctttacttactccctaatgatgaatatt-GGCATTATTAACA-------CTTGTAGTCATTAGGGTTCATAAG-ACTATAAATTGCTCTT---------------ATAAAGCATTAGTACT-ATCCATT i panTro4.chr2A C 0 C 0 s ponAbe2.chr7 7584228 939 - 157549271 CTTATTATTTAAATATGACTCCCCACC---CCCACTTGAATCTA-GGGACATTGTAGTTTTCTACTGCAGACTTTGTTTCTAGTTTATACTGGGAATA-----------TATTGTTTATCATTTTCAGTGAAAGCATTCACTCGTTAAATTTCCTTTTAAAAATAATAATGGATCTTTACAATTTCTTTGAG-CTGCTCAGTGTGTATAA---------------TGTGTTGAATTTTCTGTTAGTGGTTGGGAGGTAGAAATAGATACTT---------------------TATCTCTATTTTAGCCATTTCCATAATTATATATCTCAATAGTCTTGTCAATGCATCAGTAGTCCTATGACTGAATTAATGA-----TTACTTTTAGTAGTCACTTAATTTCTTACTGATG--ATGATGATTCTATTTTTGTGAATCATCTTGGATGATTCTCTAAAATCTTAGAAAGCTAATTTTGTTAATGCTATGC-------------------------------------------ATATAA----------------------------------------------------------------------------------------------------------------------------CACATC----AATACATTTTCTCTATTAAAAAAATTAAAGCAGTT---ATAGGTAGATCAGAATTTACCATTACTAACTCCTCA-GTCCTT-CTTATTTCCCTGTTACCAGTTTGGTATATTTAT-ATAttaggttgatccatatgaaattgccaatatt-----atttctgaactgataaaaagcagcaatttcttatgattcaacctaTTATATGTGCCCATAGACTACGTATAATGACTTTGCATGTTT-----TTATATTATAGTGCTatacctcacatactgttctgcaatttattttttcactcaacaatgtcttttcataa--------tttctttcatgggagtctatacaagtttctacctccctacttttaaaatgttgcataattttctaatgtttgggatttgtcattgctttacttactccctaatgatgaatattGGGCATTATTAACA-------CTTGTAGTCATTAGGG-TCATATGAACCATAAATTGCTCCT-------------TGTTAAAGCATTAGTACTAATCCATT i ponAbe2.chr7 C 0 C 0 s nomLeu3.chr13 7284305 924 - 110113093 CTTATTATTTAAATATGATTCCCCACC---CCCACTTGAATCTA-GGGACATTGTAGTTTTCTATTACAGAC-TTGTTTCTGGTTTATACTGGGAATA-----------TATTGTTTATCATATTCAGTGAAAGCATTCACTGGTTAGATTTCCTTTTAAAAATAATAATGGATGTTTACAATTTCTTTGAG-CTGCTCAGTGTGTATAA---------------TGTGTTGAATTTTCTGTTAGTGGTAGGGAGGTAGAAATAGATACTT---------------------TATCTCTATTTTAGCCATTTCCATAATTATATATCTCAATAGTCTTGTCAATGCATCATTAGTCCTGTGACTGAATTAATGA-----TTACTTTTAGTAGTC----AATTTCTTACTGATG--ATGATGATTCTACTTTTGTGAATCATCTTGGATGATTCTCTAAAATCTTAGaaagctaattttg----aggtatgc-------------------------------------------atataa----------------------------------------------------------------------------------------------------------------------------cacatc----aatacattttctctattaaaaaaattaaagc-att---ataggtagatcaggatttaccattactaactcctca-gtcctt-cttatttccctgttaccagtttggtatatTTAT-ATAttaggttgatccatatgaaattgccaatatt-----atttctgaactgatgaaaagcagcaatttcttatgattcaacctaTtatatgtgcccatagactacatacaatgactttgcatgttt-----ttatattatagtgctatacctcacatactgttctgcaatttattttttcactcaacaatgtcttttggtaa--------tttctctcatgggagtctatacaagtttctacctccctacttttaaaatgttgcgtaattttctaatgttt-ggatttgtcattgctttacttactccctaatgatgaatatt-GGCATTATTAACA-------CTTGTAGTCATTAGGGTTCATATG-ACTGTAAATTGCTCTT---------------ATAAAGCATTAGTACT-AACCATT i nomLeu3.chr13 C 0 C 0 s rheMac3.chr3 7192405 909 - 198365852 CTTATTATTTAAATATGACTCTCCACC--TCCCACTTGAATCTA-GGGACATTGTAATTTTTTATTGCAGACTTTGTTTCTGGTTTATACTGGGAATA-----------TATTG-TTATCATTTTCAGTGAAAGCATTCACTGGTTAAATTTCCTTTTAAAAATAATAATGGATCTTTACAATTTCTTTGAG-CTACTCAGTGTGTATAA---------------AGTGTCGAAATTTCTGTTAGTGGTTGGGAGGTAGAAATAGATACTT---------------------CATCTCTATTTTAGCCATTTCCACAATTATATATCTTAATAGTCTTCTCAATGCATCATTAGTCCTATGGCTGAATTAATGA-----TTACTTTTAGTGGTCACTTAATTTCTTACTGATC--ATGATGATTCTACTTTTGTGAATCATCTTGGATGATTCTCTAAAATCTTAGaaaactaattttg----aggtatgc-------------------------------------------atataa----------------------------------------------------------------------------------------------------------------------------cacatc----aatacattttttctatttacaaaattaaagc-att---ataggtagatcagaatttaccattactaactcctca-gtcctt-cttatttccctgttaccagtttggtatatTTAT-ATAttaggttgatctgtatgaaattgccaatatt-----atttctgaactgatgaaaagcagcagtttcttatgattcaacGTTTTacatgtgcccatagactacatataatgactttgcatgttt-----ttata----agtgctacacctcacatactgttctgcaatttattttttcactcaacaatgtcttttgataa--------tttctttcatgagagtccatataaatttctgcctccttgcttttaaaatgttgcataattttctaatgttt-ggatttgccattgttttacttattccgtagtgatgaatatC-GGCATT-----------------------ATTAGGGTTCATATG-ACTGTAAATTGCTCTT---------------ATAAAGCATTAGTACT-GTCCATT i rheMac3.chr3 C 0 C 0 s macFas5.chr3 7358013 909 - 192294377 CTTATTATTTAAATATGACTCTCCACC--TCCCACTTGAATCTA-GGGACATTGTAATTTTTTATTGCAGACTTTGTTTCTGGTTTATACTGGGAATA-----------TATTG-TTATCATTTTCAGTGAAAGCATTCACTGGTTAAATTTCCTTTTAAAAATAATAATGGATCTTTACAATTTCTTTGAG-CTACTCAGTGTGTATAA---------------AGTGTCGAAATTTCTGTTAGTGGTTGGGAGGTAGAAATAGATACTT---------------------TATCTCTATTTTAGCCATTTCCACAATTATATATCTTAATAGTCTTCTCAATGCATCATTAGTCCTATGGCTGAATTAATGA-----TTACTTTTAGTGGTCACTTAATTTCTTACTGATC--ATGATGATTCTACTTTTGTGAATCATCTTGGATGATTCTCTAAAATCTTAGaaaactaattttg----aggtatgc-------------------------------------------atataa----------------------------------------------------------------------------------------------------------------------------cacatc----aatacattttttctatttacaaaatgaaagc-att---ataggtagatcagaatttaccattactaactcctca-gtcctt-cttatttccctgttaccagtttggtatatTTAT-ATAttaggttgatctgtatgaaattgccaatatt-----atttctgaactgatgaaaagcagcagtttcttatgattcaacGTTTTacatgtgcccatagactacatataatgactttgcatgttt-----ttata----agtgctacacctcacatactgttctgcaatttattttttcactcaacaatgtcttttgataa--------tttctttcatgagagtccatataaatttctgcctccttgcttttaaaatgttgcataattttctaatgttt-ggatttgccattgttttacttattccgtagtgatgaatatC-GGCATT-----------------------ATTAGGGTTCATATG-ACTGTAAATTGCTCTT---------------ATAAAGCATTAGTACT-GTCCATT i macFas5.chr3 C 0 C 0 s papAnu2.chr3 6922968 909 - 180432695 CTTACTATTTAAATATGACTCTCCACC--TCCCACTTGAATCTA-GGgacattgtaattttttattgcagACTTTGTTTCTGGTTTATACTGGGAATA-----------TATTG-TTACCATTTTCAGTGAAAGCATTCACTggttaaatttccttttaaaaataataatggatcTTCACAATTTCTTTGAG-CTGCTCAGTGTGTATAA---------------AGTGTTGAAATTTCTGTTAGTGGTTGGGAGGTAGAAATAGATACTT---------------------TATCTCTATTTTAGCCATTTCCACAATTATATATCTTAATAGTCTTCTCAATGCATCATTAGTCCTATGGCTGAATTAATGA-----TTACTTTTAGTGGTCACTTAATTTCTTACTGATC--ATGATGATTCTACTTTTGTGAATCATCTTGGATGATTCTCTAAAATCTTAGAAAACTAATTTTG----AGGTATGC-------------------------------------------ATATAA----------------------------------------------------------------------------------------------------------------------------CACATC----AATACAttttttctatttacaaaatTAAAGC-ATT---ATAGGTAGATCAGAATTTACCATTACTAACTCCTCA-GTCCTT-CTTATTTCCCTGTTACCAGtttggtatatttat-atattaggtTGATCTGTATGAAATTGCCAATATT-----ATTTCTGAACTGATGAAAAGCAGCAGTTTCTTATGATTCAACGTTTTACATGTGCCCATAGACTACATATAATGACTTTGCATGTTT-----TTATA----AGTGCTACACCTCACATACTgttctgcaatttattttttcactcaacagTGTCTTTTGATAA--------TTTCTTTCATGAGAGTCCATATAAATTTCTGCCtccttgcttttaaaatgttgcatAATTTTCTAATGTTT-GGATTTGCCATTGTTTTACTTATTCTGTAGTGATGAATATC-GGCATT-----------------------ATTAGGGTTCCTATG-ACTGTAAATTGCTCTT---------------ATAAAGCATTAGTACT-GTCCATT i papAnu2.chr3 C 0 C 0 s chlSab2.chr21 6822490 914 - 127223203 CTTATTATTTAAATATGACTCTCCACC--TCCCACTTGAATCTA-GGGACATTATAATTTTTTATTGCAGACTTTGTTTCTGGTTTATACTGGGAATA-----------TATTGTTTATAATTTTCAGTGAAAGCATTCACTGGTTAAATTTCCTTTTAAAAATAATAATGGATCTTTACAATTTCTTTTAG-CTGCTCAGTGTGTATAA---------------AGTGTTGAAATTTCTGTTAGTGGTTGGGAGGTAGAAATAGATACTT----------------------ATCTCTATTTTAGCCATTTCCACAATTATATATCTTAATAGTCTTCTCAATGCATCATTAGTCCTATGGCTGAATTAATGA-----TTACTTTTAGTGGTCACTTAATTTCTTACTGATC--ATGATGATTCTACTTTTGTGAATCATCTTGGATGATTCTCTAAAATCTTAGaaaactaattttg----aggtatgc-------------------------------------------atataa----------------------------------------------------------------------------------------------------------------------------cacatc----aatacatttttttaatttacaaaattaaagc-att---ataggtagatcagaatttaccattactaactcctca-gtcctt-cttatttccctgttaccagtttggtatatTTAT-ATAttaggttgatccgaatgaaattgccaatatt-----ttttctgaactgatgaaaagcagcagtttcttatgattcaacctaTTacatgtgcccatagactacatataatgactttgcatgtttttatattata----agtgctacacctcacatactgttctgcaatttattttttcactcaacaatgtcttttgataa--------tttctttcatgagagttcatataaatttctgcctccttgcttttaaaatgttgcgtaattttctaatgttt-ggatttgccattgttttacttattctgtaatgatgaatatC-AGCATT-----------------------ATGAGGGTTCATATG-ACTGTAAATTGGACTT---------------ACAAAGCATTAGTACT-GTCCATT i chlSab2.chr21 C 0 C 0 s calJac3.chr8 94485599 900 + 128169293 CTTACTATTTAAATATGACTCTCCACT---GCCGTTTGAATTGAGGGGACATTGTAGTTTTCTCCTGCAGAC-TTGTTTCTGTTTTATACTGGGAATA-----------TATTGTTTATCACTTTTAGTGAAAGCATTCACTGGTTAAATTTCCTTTCAAAAATAATAATGGATCTTTACAATTTCTTTGAG-CTGCTCGGTGTGTAAAA---------------TGTATTGAATTTTCTGTTAGTGATTGGGAGGTAAAAATCGATGCTT---------------------TATCTGTATTTTAGCCATTTCCATAATTATATATCTCAATAGTCTTCTCACTGCATTACT---------------------------TTACTTTTAGTAGCCACTTAATTTCTTACTAATG--ATAATTATTCTGCTTTTGTGAATCATCTTGGATGATTCTCTAAAATCTTAGAAAGCT-ATTTTG----AGGTATGC-------------------------------------------ATATAA----------------------------------------------------------------------------------------------------------------------------TACATG----AATACATTTTTTCTATTAAAAAAATTGAAGC-ATT---ATAGGTAGATCAGAGATTACCATTACTACCTCCTTA-GTTTTT-TTTTTCCCCCTGTTACCAGTTTGGTATATTTAT-ATAttaggttgatctgtatgaaactgccaatatt-----atttctgacctgatg-aaagcagcaatttcttatgattcaacctaTtatatgtgcccgtagac----tataatgactttgcattttt-----ttatatcatagtgctatacctcacatactattctgcagttta-tttttcactcaacagtgtcttttgataa--------tttctttcatgggagtccatacaaatttctaccttcctacttttaaaatgttgcataacttcctaatgttt-gtatttgccattgttttacttattccctaatgaagaatatt-GGCGTTACTAACA-------CTTATAGTCATTAGGGTTCATATG-ACTGTAAATTGCTCTT---------------ATAAAGCATTAGTACT-ATCCATG i calJac3.chr8 C 0 C 0 s canFam3.chr16 43587337 1165 - 59632846 TTTTTTTTTTAAGT---ACTTACAATTTATGCTCTTTGAATCTAGGGGATATTGCAGCTTTCTA-TGCAGACTTTGTTTCTGGTTTATGCTGGGAATATTGTAGTCCATTCTTGTTTCTTATTTTGAATAAAACTGTTCTCTG----aattttattttgaaaataata------ttttatcatttatttGAGCCTATTCTCTAAGTATCATCTAATTATAGAACCTGTTTTGTTTTCTGTGTTGAAGATGGGGATGTAGAAATGGATACTTTTTATTTCAGTTTACTTTTGTTAGCTGTATTTTAGCTACTGCCACAGTTTCATATTGTAATAATATTTTCAGTATATCTTTAGTCCTGTGGGCGAATTACTGGTAACTTCACTTTTAGTAGACAATTA-----TTACTAATGGAATGAT-ATTTTAC-TTTATGAATCATCTTGTTTGACTTGCTAAAGTCTTAAAATGCTAATTTTG----AGATATACTTTTTTTTTTTTTTAAgagagggtgggggagagggagaaagaactataagctggctccatgcccagtgcagagcccaatgtggggcttgatttcacaaccctgagatcttgatctgagctgaaatcaagagttagatacttaaccaactgagccacccatgcAACTTGAGATGCACATTTTAAAATATATTTCCTCAA--AAAAGAATAAAAAC-ATCCTGATAATCAAAGCTGTCTATACTTCTGCTGCCTCTTGA-GTCTTGACATTTTTTCCTTTTACCTGTTTGGTGCATTTACAATAttaggttgatccatatgaagttgccaactttcaaccatttttgacctg--gaaaaacagcaa---cttatgattgaacctaTTTTATGTGCTTGTAGACTGCACATAATTGCTTTGCATATTT-----TTGTACGATAGTGCTCTACCTCACATATGCTTCTGTGTCTTATTTTTCTACCCAGCTCTGTGGCGTGGTGAAATTTTTTTTTTTTTGATGGAAATCAAAACAAATTtctaccac--tgttttttaaatgctgcat--ctttcca--gttt-ggatttgccatggttttagtaattccctagtgatgactatt-taggttgcttacagttttctcttacaGTCTTTAGACTTATTATG-ACTGTCAATTGCTTTTATGGTTGGTTCTATAATAAAACAGTAGTGCA-GTCCATT i canFam3.chr16 I 126 C 0 a score=26204.000000 s hg38.chr1_KI270765v1_alt 178351 8 + 185285 AAAACTGC s panTro4.chr2A 22213321 8 - 113622374 AAAACTGC i panTro4.chr2A C 0 C 0 s ponAbe2.chr7 7585167 8 - 157549271 AAAACTGC i ponAbe2.chr7 C 0 M 521 s nomLeu3.chr13 7285229 8 - 110113093 AAAACTGC i nomLeu3.chr13 C 0 C 0 s rheMac3.chr3 7193314 8 - 198365852 AAAACTGC i rheMac3.chr3 C 0 C 0 s macFas5.chr3 7358922 8 - 192294377 AAAACTGC i macFas5.chr3 C 0 C 0 s papAnu2.chr3 6923877 8 - 180432695 AAAACTGC i papAnu2.chr3 C 0 C 0 s chlSab2.chr21 6823404 8 - 127223203 AAAACTGC i chlSab2.chr21 C 0 C 0 s canFam3.chr16 43588502 8 - 59632846 AGAACTGC i canFam3.chr16 C 0 C 0 e calJac3.chr8 94486499 0 + 128169293 C a score=14764.000000 s hg38.chr1_KI270765v1_alt 178359 9 + 185285 TTTTAggct s panTro4.chr2A 22213329 9 - 113622374 TTTTAggct i panTro4.chr2A C 0 C 0 s nomLeu3.chr13 7285237 9 - 110113093 TTTTAggcc i nomLeu3.chr13 C 0 C 0 s rheMac3.chr3 7193322 9 - 198365852 TTTTACAcc i rheMac3.chr3 C 0 C 0 s macFas5.chr3 7358930 9 - 192294377 TTTTACAcc i macFas5.chr3 C 0 C 0 s papAnu2.chr3 6923885 9 - 180432695 TTTTAcacc i papAnu2.chr3 C 0 C 0 s chlSab2.chr21 6823412 9 - 127223203 TTTTAgact i chlSab2.chr21 C 0 C 0 s canFam3.chr16 43588510 9 - 59632846 TTTTAATCT i canFam3.chr16 C 0 I 50 e calJac3.chr8 94486499 0 + 128169293 C e ponAbe2.chr7 7585175 521 - 157549271 M a score=154774.000000 s hg38.chr1_KI270765v1_alt 178368 90 + 185285 gggcacggtggctcatgcctgtaatcccagcacttcgggaggccgaggtgggtggatcgtgaggtctggagatcgagaccatcctggcta s panTro4.chr2A 22213338 90 - 113622374 gggcacggtggctcatgcctgtaatcccagcactacaggaggccgaggtgggtggatcatgaggtctggagatcgagaccatcctggcta i panTro4.chr2A C 0 C 0 s nomLeu3.chr13 7285246 90 - 110113093 gggcgcagtggctcatgcctgtaatcccagcactttgggaggccgaggtgggcggatcatgaggtcaggagatcgagaccatcctggcta i nomLeu3.chr13 C 0 C 0 s rheMac3.chr3 7193331 90 - 198365852 gagcgcggtggctcatgcctgtaatcccagcactttggcaggccaaggcgggcggatcaccgtgtcaggagatcgaaaccatcctggcta i rheMac3.chr3 C 0 I 138 s macFas5.chr3 7358939 90 - 192294377 gagcacggtggctcatgcctgtaatcccagcactttggcaggccaaggcgggcggatcaccgtgtcaggagatcgaaaccatcctggcta i macFas5.chr3 C 0 C 0 s papAnu2.chr3 6923894 90 - 180432695 gagcgtggtggctcatgcctgtaatcccagcactttggcaggccaaggcgggcggatcaccatgtcaggagatcgaaaccatcctggcta i papAnu2.chr3 C 0 C 0 s chlSab2.chr21 6823421 90 - 127223203 gagcgcggtggctcatgcctgtaatcccagcactttggcaggccaaggcgggcggatcaccgtgtcaggagatcgaaaccatcctggcta i chlSab2.chr21 C 0 C 0 e calJac3.chr8 94486499 0 + 128169293 C e ponAbe2.chr7 7585175 521 - 157549271 M e canFam3.chr16 43588519 50 - 59632846 I a score=76794.000000 s hg38.chr1_KI270765v1_alt 178458 62 + 185285 acatggtgaagccccatctctactaaaaatac-aaaaaattagctgggcatggtggcaggcgc s panTro4.chr2A 22213428 62 - 113622374 acatggtgaaaccccatctctactaaaaatac-aaaaaattagctgggcatggtggcaggcgc i panTro4.chr2A C 0 C 0 s nomLeu3.chr13 7285336 62 - 110113093 acacggtgaaaccccgtctctactaaaaatac-aaaaaattagctgggcgtgagggcaggtgc i nomLeu3.chr13 C 0 C 0 s macFas5.chr3 7359029 63 - 192294377 acatggtaaaaccccatttctactaaaaatacaaaaaaattagccgggcgtggtggcaggcgc i macFas5.chr3 C 0 C 0 s papAnu2.chr3 6923984 63 - 180432695 acatggtgaaaccccatttctactaaaaatacaaaaaaattagccgggcgtggtggcaggcgc i papAnu2.chr3 C 0 C 0 s chlSab2.chr21 6823511 63 - 127223203 acatggtgaaaccccatttctactaaaaatacaaaaaaattagccgggcgtggtggcaggcgc i chlSab2.chr21 C 0 I 89 e calJac3.chr8 94486499 0 + 128169293 C e rheMac3.chr3 7193421 138 - 198365852 I e ponAbe2.chr7 7585175 521 - 157549271 M e canFam3.chr16 43588519 50 - 59632846 I a score=66035.000000 s hg38.chr1_KI270765v1_alt 178520 139 + 185285 ctgtagtcccagctactcgggaggctgaggcaggagaatgccgtgaa-------gacagagcttgcagtgagctgagattgtgccactgcactccagcctgggtgacatagcgagactccatctcaaaaacaaacaaacaaaaaaa s panTro4.chr2A 22213490 146 - 113622374 ttgtagtcccagctactcgggaggctgaggcaggagaatgccgtgaacctgggagacagagcttgcagtgagctgagattgtgccactgcactccagcctgggtgacatagcaagactccatctcaaaaacaaacaaacaaaaaaa i panTro4.chr2A C 0 C 0 s nomLeu3.chr13 7285398 135 - 110113093 ctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccgggagacagagcttgcagtgagccgagattgtgccactgcactccagcctgggcaacatagcgagactctgtctcaaaaacaaac----------- i nomLeu3.chr13 C 0 C 0 s macFas5.chr3 7359092 86 - 192294377 ------------------------------------------gtgaacccaggaggcggagcttgcagtgagccgagatcgcgccactgcactccagcctgggggacagagcgagact--gtctcaaaaa---------------- i macFas5.chr3 C 0 C 0 s papAnu2.chr3 6924047 86 - 180432695 ------------------------------------------gtgaacccaggaggcggagcttgcagtgagccgagatcgcgccactgcactccagcctgggggacagagcgagact--gtctcaaaaa---------------- i papAnu2.chr3 C 0 C 0 e calJac3.chr8 94486499 0 + 128169293 C e chlSab2.chr21 6823574 89 - 127223203 I e rheMac3.chr3 7193421 138 - 198365852 I e ponAbe2.chr7 7585175 521 - 157549271 M e canFam3.chr16 43588519 50 - 59632846 I a score=3521.000000 s hg38.chr1_KI270765v1_alt 178659 10 + 185285 caaacaaaca s panTro4.chr2A 22213636 10 - 113622374 aaaacaaaca i panTro4.chr2A C 0 C 0 s nomLeu3.chr13 7285533 9 - 110113093 -aaacaaaca i nomLeu3.chr13 C 0 C 0 s rheMac3.chr3 7193559 10 - 198365852 caaaaaaacc i rheMac3.chr3 I 138 C 0 s macFas5.chr3 7359178 4 - 192294377 ------aacc i macFas5.chr3 C 0 C 0 s papAnu2.chr3 6924133 4 - 180432695 ------aacc i papAnu2.chr3 C 0 C 0 e calJac3.chr8 94486499 0 + 128169293 C e chlSab2.chr21 6823574 89 - 127223203 I e ponAbe2.chr7 7585175 521 - 157549271 M e canFam3.chr16 43588519 50 - 59632846 I a score=5490.000000 s hg38.chr1_KI270765v1_alt 178669 3 + 185285 --aaA s panTro4.chr2A 22213646 3 - 113622374 --aaA i panTro4.chr2A C 0 C 0 s nomLeu3.chr13 7285542 3 - 110113093 --aaa i nomLeu3.chr13 C 0 C 0 s rheMac3.chr3 7193569 5 - 198365852 aaaaa i rheMac3.chr3 C 0 C 0 s macFas5.chr3 7359182 5 - 192294377 aaaaa i macFas5.chr3 C 0 C 0 s papAnu2.chr3 6924137 5 - 180432695 caaaa i papAnu2.chr3 C 0 C 0 s chlSab2.chr21 6823663 5 - 127223203 aaaaa i chlSab2.chr21 I 89 C 0 e calJac3.chr8 94486499 0 + 128169293 C e ponAbe2.chr7 7585175 521 - 157549271 M e canFam3.chr16 43588519 50 - 59632846 I a score=120042.000000 s hg38.chr1_KI270765v1_alt 178672 56 + 185285 --AAAACTGCTTTTAAATGTATTTGTATTGAAAAATACTGAGATATAGTCCTTCTATT s panTro4.chr2A 22213649 54 - 113622374 --AA--CTGCTTTTAAATGTATTTGTATTGAAAAATACTGAGATGTAGTCCTTCTATT i panTro4.chr2A C 0 C 0 s nomLeu3.chr13 7285545 54 - 110113093 --aT--CTGCTTTTAAATGTATTTGTATTGAAAAATACTGAGATGTAGTCCTTCTATT i nomLeu3.chr13 C 0 C 0 s rheMac3.chr3 7193574 54 - 198365852 --aa--CTGCTTTTAAATGTATTTGTTTTGAAAAATACTGAGATGTAGTCCTTCTATT i rheMac3.chr3 C 0 I 120 s macFas5.chr3 7359187 54 - 192294377 --aa--CTGCTTTTAAATGTATTTGTTTTGAAAAATACTGAGATGTAGTCCTTCTATT i macFas5.chr3 C 0 C 0 s papAnu2.chr3 6924142 54 - 180432695 --ta--ctgcttttaaatgtatttgttttgaaaaatactgaGATGTAGTCCTTCTATT i papAnu2.chr3 C 0 C 0 s chlSab2.chr21 6823668 54 - 127223203 --aa--CTGCTTTTAAATGTATTTGTTTTGAAAAATACTGAGATGTAGTCCTTCTATT i chlSab2.chr21 C 0 C 0 s calJac3.chr8 94486499 52 + 128169293 AAAA--CGGCTTTTAAATGTATTTGTATTGAAAAATACTGAGATGTG----TTCTAGT i calJac3.chr8 C 0 C 0 e ponAbe2.chr7 7585175 521 - 157549271 M e canFam3.chr16 43588519 50 - 59632846 I a score=2557.000000 s hg38.chr1_KI270765v1_alt 178728 9 + 185285 TAGTT------------AACC s panTro4.chr2A 22213703 9 - 113622374 TAGTT------------AACC i panTro4.chr2A C 0 C 0 s nomLeu3.chr13 7285599 9 - 110113093 TAGTT------------AACC i nomLeu3.chr13 C 0 C 0 s macFas5.chr3 7359241 21 - 192294377 TAGTTtgcctgcctgcctgcc i macFas5.chr3 C 0 I 60 s papAnu2.chr3 6924196 9 - 180432695 TAgtt------------tgcc i papAnu2.chr3 C 0 I 32 s chlSab2.chr21 6823722 9 - 127223203 TAGTT------------AAcc i chlSab2.chr21 C 0 I 122 s calJac3.chr8 94486551 1 + 128169293 ----T---------------- i calJac3.chr8 C 0 C 0 e rheMac3.chr3 7193628 120 - 198365852 I e ponAbe2.chr7 7585175 521 - 157549271 M e canFam3.chr16 43588519 50 - 59632846 I a score=8889.000000 s hg38.chr1_KI270765v1_alt 178737 25 + 185285 AACCAACCTTCCTTCCTTCC-TCttt- s panTro4.chr2A 22213712 25 - 113622374 AACCAACCTTCCTTCtttcc-tcttt- i panTro4.chr2A C 0 C 0 s nomLeu3.chr13 7285608 21 - 110113093 AATCTACCTTCCTTCCttc-----tt- i nomLeu3.chr13 C 0 C 0 s macFas5.chr3 7359322 26 - 192294377 gtcctaacttccttccttctgtcctt- i macFas5.chr3 I 60 I 1 s papAnu2.chr3 6924237 26 - 180432695 gtcctaacttacttccttctgtcctt- i papAnu2.chr3 I 32 I 1 s calJac3.chr8 94486552 17 + 128169293 --------TTCTttctctt--tctttg i calJac3.chr8 C 0 C 0 e chlSab2.chr21 6823731 122 - 127223203 I e rheMac3.chr3 7193628 120 - 198365852 I e ponAbe2.chr7 7585175 521 - 157549271 M e canFam3.chr16 43588519 50 - 59632846 I a score=5001.000000 s hg38.chr1_KI270765v1_alt 178762 3 + 185285 ttt s panTro4.chr2A 22213737 3 - 113622374 ttt i panTro4.chr2A C 0 C 0 s nomLeu3.chr13 7285629 3 - 110113093 ttt i nomLeu3.chr13 C 0 C 0 s macFas5.chr3 7359349 3 - 192294377 ttt i macFas5.chr3 I 1 I 13 s papAnu2.chr3 6924264 3 - 180432695 ttt i papAnu2.chr3 I 1 I 13 s chlSab2.chr21 6823853 3 - 127223203 ttt i chlSab2.chr21 I 122 C 0 s calJac3.chr8 94486569 3 + 128169293 tct i calJac3.chr8 C 0 C 0 e rheMac3.chr3 7193628 120 - 198365852 I e ponAbe2.chr7 7585175 521 - 157549271 M e canFam3.chr16 43588519 50 - 59632846 I a score=498231.000000 s hg38.chr1_KI270765v1_alt 178765 223 + 185285 tttttttttttttt-gagacagggtctccctctgtcacccaggctggagtgcagtggcg--------------------------------------------taatcttggctcactgtaacctctgcctcctgggttcaagtgattctcctgcctcagcctcctgagtagctgagactacaggcgtgtgccaccacgctcggctg--ttttttgtatttttggtagagacaggatttcaccatgttgcccaggctggtctcgaactcc s panTro4.chr2A 22213740 224 - 113622374 tttttttttttttttgagacagggtctccctctgtcacccaggctggagtgcagtggcg--------------------------------------------taatcttggctcgctgaaacctctgcctcctgggttcaagtgattctcctgcctcagcctcctgagtagctgagactacaggcgtgtgccaccacgctcggctg--ttttttgtatttttggtagagacaggatttcaccatgttgcccaggctggtctcgaactcc i panTro4.chr2A C 0 C 0 s nomLeu3.chr13 7285632 270 - 110113093 ttttttttttttgtggagacagggtctaactctgtcacccaggctggagtgcagtggcgtaatcTTGgtctcgctctgtcacccaggctgtagtgcagtggcataatcttggctcactgtaacctctgcctcttgggttcaagtgattctcctgcctcagcctcctgagtagctgagactacaggcgtgtgccaccacgctcggctgctttttttgtatttttggtagagacaggatttcaccgtgttgcccaggctggtctcgaattcc i nomLeu3.chr13 C 0 C 0 s rheMac3.chr3 7193748 223 - 198365852 -tttttttttttttggagatagggtcttgctctgtcacccaggctggagtggcatggtg--------------------------------------------taatcttggctcactgtaacctctgcctcccgggttcaagtgattctcctgcctcagcctcctgagtagctgagactacaggcatgtgccaccacgcttggcta--ttttttgcagttttggtagagacgggatttcaccccgttgcccacgctggtcttgaactcc i rheMac3.chr3 I 120 C 0 s macFas5.chr3 7359365 223 - 192294377 -tttttttttttttggagatagggtcttgctctgtcacccaggctggagtgccatggtg--------------------------------------------taatcttggctcactgtaacctctgcctcccgggttcaagtgattctcctgcctcagcctcctgagtagctgagactacaggcgtgtgccaccacgcttggcta--ttttttgtatttttggtagagacgggatttcaccacgttgcccaggctggtcttgaactcc i macFas5.chr3 I 13 C 0 s papAnu2.chr3 6924280 223 - 180432695 -tttttttttttttggagatagggtcttgctctgtcacccaggctggagtgcagtggtg--------------------------------------------taatcttggctcactgtaacctctgcctcccgggttcaagtgattctcctgcctcagcctcctgagtagctgagactacaggcgtgtgccaccacgcttggcta--ttttttgtatttttggtagagacgggatttcaccacgttgcccaggctggtcttgaactcc i papAnu2.chr3 I 13 C 0 s chlSab2.chr21 6823856 223 - 127223203 -tttttttttttttggagatagggtctcgctctgtcacccaggctggagtacagtggtg--------------------------------------------tcatcttggctcactgtaacctctgcctcccgggttcaagtgaatctcctgcctcagcctcttgagtagctgagactacaggcgtgtgccaccacgcttggcta--ttttttgtatttttggtagagacgggatttcaccatgttgcccaggctggtcttgaactcc i chlSab2.chr21 C 0 C 0 s calJac3.chr8 94486572 217 + 128169293 -ttttgtttttttttgagatagggtctcgctctgtcacccaggctggagtgcagtgacg--------------------------------------------------ttgctcagtgtaacctctgcctcccaggttcaagtgattctcctgcctcagccttatgagtatctgagactactggcgtgtggtagcatgcctggcta--atatttgtatttttgggagagatggggttttaccatgttgcccaggctggtcttgaacttc i calJac3.chr8 C 0 C 0 e ponAbe2.chr7 7585175 521 - 157549271 M e canFam3.chr16 43588519 50 - 59632846 I a score=79213.000000 s hg38.chr1_KI270765v1_alt 178988 26 + 185285 tgagctcaagcgatccacacacttta s panTro4.chr2A 22213964 26 - 113622374 tgagctcaagcgatccacacacttta i panTro4.chr2A C 0 C 0 s ponAbe2.chr7 7585708 26 - 157549271 tgagctcaagcgatccacccacttta i ponAbe2.chr7 M 521 C 0 s nomLeu3.chr13 7285902 26 - 110113093 tgagctcaagcgatccacccacttta i nomLeu3.chr13 C 0 C 0 s rheMac3.chr3 7193971 26 - 198365852 tgagctcaagcgatccacccacttca i rheMac3.chr3 C 0 C 0 s macFas5.chr3 7359588 26 - 192294377 tgagctcaagcgatccacccacttca i macFas5.chr3 C 0 C 0 s papAnu2.chr3 6924503 26 - 180432695 tgagctaaagcgatccacccacttca i papAnu2.chr3 C 0 C 0 s chlSab2.chr21 6824079 26 - 127223203 tgagctcaagcgatccacccacttca i chlSab2.chr21 C 0 C 0 s calJac3.chr8 94486789 26 + 128169293 tgagctcaagtgatccatccacctta i calJac3.chr8 C 0 I 263 e canFam3.chr16 43588519 50 - 59632846 I a score=143314.000000 s hg38.chr1_KI270765v1_alt 179014 53 + 185285 gcctctcaaagtgctaagattataggcatgagccacca----------------------------------------cacccagcTGG-TTAA--- s panTro4.chr2A 22213990 48 - 113622374 gcctcccaaagtgctaagattataggcatgagccacca----------------------------------------cacccagcTG--------- i panTro4.chr2A C 0 C 0 s ponAbe2.chr7 7585734 56 - 157549271 gcctcccaaagtgctaagattataggcatgagccacca----------------------------------------cacccagctGG-TTAATCT i ponAbe2.chr7 C 0 C 0 s nomLeu3.chr13 7285928 56 - 110113093 gcctcccaaagtgctaagattataggcatgagccacca----------------------------------------cacccagcTGG-TTAATCT i nomLeu3.chr13 C 0 C 0 s rheMac3.chr3 7193997 56 - 198365852 gcctcctaaagtgctaggattatagacatgagccacca----------------------------------------cacccagcTGG-TTAATCT i rheMac3.chr3 C 0 C 0 s macFas5.chr3 7359614 56 - 192294377 gcctcctaaagtgctaggattatagacatgagccacca----------------------------------------cacccagcTGG-TTAATCT i macFas5.chr3 C 0 C 0 s papAnu2.chr3 6924529 56 - 180432695 gcctcctaaagtgctaggattatagacatgagccacca----------------------------------------cacccagctgg-ttaATCT i papAnu2.chr3 C 0 C 0 s chlSab2.chr21 6824105 56 - 127223203 gcctcctaaagtgctaggattatagacatgagccacca----------------------------------------cacccagcTGG-TTAATCT i chlSab2.chr21 C 0 C 0 s calJac3.chr8 94487078 97 + 128169293 gcctcccaaagtgctgggattacaggcttgagccaccgcaccctgccAAAGTGGTAGATTTAAAGGCATGAGTCACCTCACCCAGCTGGTTTAATTT i calJac3.chr8 I 263 C 0 e canFam3.chr16 43588519 50 - 59632846 I a score=1307505.000000 s hg38.chr1_KI270765v1_alt 179067 407 + 185285 TCTTTCAGTTGTTCCTCAAGAAAAGTAATTCA----GTCGTTTTATGTTTTGACCTTGAACATAACCTGTTGTGTTTCAACTCTGTCTTTCCAGGCTTCGGTTGTAAGCTT--TTTAAAGAAAGAGGATTGTATTTTATGATTTTGGCAGTGCCCTCCTTGTCTTCTTCTACAACTTCTAGTTCAGAGC----TTTATTTTGTTTCATA-T---CACTCTAGA---AATTATTAACAAACCAGTGGCTACTTAGTTGATTTAGTCAAATAGAACTAAGTCCAGACTGAACAATAT-TGGTTGATAATCATTTGGCTGATACTGAAATTTGGAT--GTTATTCAAAATAATATTCTAAagcggtg----ctaatagaaatataatgagaaccacatatgcaatttaaaacttcctagtagccacattaaaaa s panTro4.chr2A 22214038 327 - 113622374 -------------------------------------------------------------------------------------TCTTTCCAGGCTTCGGTTGTAAGCTT--TTTAAAGAAAGAGGATTGTATTTTATGATTTTGGCAGTGCCCTCCTTGTCTTCTTCTACAACTTCTAGTTCAGAGC----TTTATTTTGTTTCATAAT---CACTCTAGA---AATTATTAACAAACCAGTGGCTACTTAGTTGATTTAGTCAAATAGAACTAAGTCCAGACTGAACAATAT-TGGTTGATAATCATTTGGCTGATACTGAAATTTGGAT--GTTATTCAAAATAATATTCTAAagcggtg----ctaatagaaatataatgagtaccacatatgcaatttaaaacttcctagtagccacattaaaaa i panTro4.chr2A C 0 C 0 s ponAbe2.chr7 7585790 408 - 157549271 TCTTTCAGTTGTTCCTCAAGAAAAGTAATTCA----GTTGTTTTATGTTTTGACCTTGAACATAACCTGTTGTGTTTCAACTCTGTCTTTCCAGGCTTAGGTTGTAAGCTT--TTTAAAGAAAGAGGATTGTATTTTATGATTTTGGCAGTGCTCTCCTTGTCTTCTTCTACAACTTCTAGTTCAGAGC----TTTATTTTGTTTCATAAC---CACTCTAGA---CATTATTAACAAACCAGTGGGTACTTAGTTGATTTAGTCAAATAGAACTAAGTCCAGACTGAACAATAT-TGGTTGATAATCATTTGGCTAATATTGAAATTTTGAT--GTTATTCAAAATAGTATTCTAAagcggtg----ctaatagaaatataatgagaaccacatatgcaatttaaaacttcctagtagccacattaaaaa i ponAbe2.chr7 C 0 C 0 s nomLeu3.chr13 7285984 408 - 110113093 TCTTTCAGTTGTTCCTCAGGAAAAGTAATTAA----GTTGTTTTATGTTTTGACCTTGAACATAACCTGTTGTGTTTCAGCTCTGTCTTTCCAGGCTTAGGTTGTAAGCTT--TTTAAAGAAAGAGGATTGTATTTTATGATTTTGGCAGTGCCCTCCTTGTCTTCTTCTACAGCTTCTAGTTCAGAGC----TTTATTTTGTTTCATAAT---CACTCTAGA---AATTATTAACAAACCAGTGGGTACTTAGCCGATTTAGTCAAATAGAACTAAGTCCAGACTGAACAATAT-TGGTTGATAATCATTTGGCTAATACTGAAATTTTGAT--GTTATTCAAAATAATATTCTAAagtggtg----ctaatagaaatataatgagaaccacatatgcaatttaaaacttcctggtagccacattaaaaa i nomLeu3.chr13 C 0 C 0 s rheMac3.chr3 7194053 405 - 198365852 TCTTTCAGTTGTTCCTCAAGAAAAGTAATTCT----ATTGTTTTATGTTTTGACCTTGAACATAACCTGTTGTGTTTCAACTC--TCTTTCCAGGCTTAGGTTGTAAGCTT--TTTAAAGAAAGAGGATTGTATTTTATGATTTTGGCACTGTCCTCCTTGTCTTCTTCTACAACTTCTAGTTCAGAGC----TTTATTTTGTTTCATAAT---CACTCTAGA---AATTAGTAACAAACCAGTGGGTACTTAGTTGATGTAGTCAAATAGAACTAAGTCCAGACTCAACAATAT-TGGTTGATAATCATTTGGATAATACTGAAATTTTGAT--ATTATTCAAAATAATATTCTAAAGTGgta-----taatagaaatataatgagaaccacatatgcaatttaaaacttcctagtagccacgttaaaaa i rheMac3.chr3 C 0 C 0 s macFas5.chr3 7359670 407 - 192294377 TCTTTCAGTTGTTCCTCAAGAAAAGTAATTCT----ATTGTTTTATGTTTTGACCTTGAACATAACCTGTTGTGTTTCAACTCTGTCTTTCCAGGCTTAGGTTGTAAGCTT--TTTAAAGAAAGAGGATTGTATTTTATGATTTTGGCACTGTCCTCCTTGTCTTCTTCTACAACTTCTAGTTCAGAGC----TTTATTTTGTTTCATAAT---CACTCTAGA---AATTAGTAACAAACCAGTGGGTACTTAGTTGATGTAGTCAAATAGAACTAAGTCCAGACTCAACAATAT-TGGTTGATAATCATTTGGATAATACTGAAATTTTGAT--ATTATTCAAAATAATATTCTAAAGTGgta-----taatagaaatataatgagaaccacatatgcaatttaaaacttcctagtagccacgttaaaaa i macFas5.chr3 C 0 C 0 s papAnu2.chr3 6924585 407 - 180432695 TCTTTCAGTTGTTCCTCAAGAAAAGTAATtct----attgttttatgttttgacCTTGAACATAACCTGTTGTGTTTCAACTCTGTCTTTCCAGGCTTAGGTTGtaagctt--tttaaagaaagaggaTTGTATTTTATGATTTTGGCACTGTCCTCCTTGTCTGCTTCTACAACTTCTAGTTCAGagc----tttattttgtttcataat---cACTCTAGA---AATTAGTAACAAACCAGTGGGTACTTAGTTGATGTAGTCAAATAGAACTAAGTCCAGACTGAACAATAT-TGGTTGATAATCATTTGGATAATACTGAAATTTTgat--attattcaaaataatattctaaagtggta-----taatagaaatataatgagaACCACATACGCAATTTAAAACTTCCTAGTAGCCATGTtaaaaa i papAnu2.chr3 C 0 C 0 s chlSab2.chr21 6824161 407 - 127223203 TCTTTCAGTTGTTCCTCAAGAAAAGTAATTCT----ATTGTTTTATGTTTTGACCTTGAACATAACCTGTTGTGTTTCAACTTTGTCTTTCCAGGCTTAGGTTGTAAGCTT--TTTAAAGAAAGAGGATTGTATTTTATGATTTTGGCACTGCCCTTCTTGTCTACTTCTACAGCTTCTAATTCAGAGC----TTTATTTTGTTTCATAAT---CACTCTAGA---AATTAGTAACAAACCAGTGGGTACTTAGTTGATGTAGTCAAATAGAACTAAGTCCAGACTGAACAATGT-TGGTTGATAATCATTTGGATAATACTGAAATTTTGAT--ATTATTTAAAATAATATTCTAAAGTGgta-----taatagaaatataatgagaaccacatatgcaatttaaaacttcctagtagccacgttaaaaa i chlSab2.chr21 C 0 C 0 s calJac3.chr8 94487175 416 + 128169293 TCTTTCAGTTATTCCTCAAGAAAGATAGTTCTTGACCTTGTTTTATGTTTTGACCGTGAACATAACCTGTTATGTTTTAACTCTGTCTTTCGAGGCTTAGGTTGTAAGCTT--TGTAAAGAAAGAGGATTGCATTTTATGATTCTGACAGTGCCCTCCTTGTCCTCTTCTGCAACTTCTAATTCAGAGCTGCTTTTTGTTTGTTTCATAAT---CATTCTAGA---AATTATTAACAAGTCAGTGGGTACTTAGTTGATTTAGTCAAATAGAACTAAGTCCAGACTGAACAATAG-TAGTGGATGATCATTTGGGTAATAATGAAATTTTGAT--GTTATTCAAAATAATATTCTAAAATGGTG----ctaatagaaatataatgagaactacatatgcaatttgaaattttctagtagccacgttaaaaa i calJac3.chr8 C 0 C 0 s canFam3.chr16 43588569 405 - 59632846 TCTTTCAGTCATTCCTCAAGAACAACAATACT----ATtactttttattt------tgaacttaacctattatgtttcatgtctgtccttccaggc-tagattgtaagcttactttaagggaagagaaacatattttaAAATTTTGGCATTGGTCTCCCTGTTCTCTTTT-TAGCAACAAATTTAGAGC----TCT------TTTCATAATAAGCATTCTGGAAATAATTATTAACAAGACAATGGGTACTTAGTTGATTTGGTGAAATTTAGCTAAGTCCAGAAATAGGTATCTATGGCTGGTAATCTTTTGGCTAAGACTGAAATTTTGATACATTATTCAAAATAATATTTCAAAGcggtgctgtccaaaagaagtat-atgtatatcacatatgcaatttaaaacttt---atagctacattaaaaa i canFam3.chr16 I 50 I 174 a score=52484.000000 s hg38.chr1_KI270765v1_alt 179474 20 + 185285 gttacagtgagctgggtgca s panTro4.chr2A 22214365 20 - 113622374 gttacagtgagctgggtgca i panTro4.chr2A C 0 C 0 s ponAbe2.chr7 7586198 20 - 157549271 gttatagtgagctgggtgca i ponAbe2.chr7 C 0 C 0 s nomLeu3.chr13 7286392 20 - 110113093 gttacagtgagctgggtgca i nomLeu3.chr13 C 0 C 0 s rheMac3.chr3 7194458 20 - 198365852 gttacagtgagctgggcgca i rheMac3.chr3 C 0 C 0 s macFas5.chr3 7360077 20 - 192294377 gttacagtgagctgggcgca i macFas5.chr3 C 0 C 0 s papAnu2.chr3 6924992 20 - 180432695 gttacagtgagctgggcgca i papAnu2.chr3 C 0 C 0 s chlSab2.chr21 6824568 20 - 127223203 gttacagtgagctgggcaca i chlSab2.chr21 C 0 C 0 s calJac3.chr8 94487591 19 + 128169293 gttacagtgggccaaggct- i calJac3.chr8 C 0 I 311 e canFam3.chr16 43588974 174 - 59632846 I a score=970952.000000 s hg38.chr1_KI270765v1_alt 179494 339 + 185285 gtggatcatttgaggtcaggagttaagagaccagcctgaccaatatggtgaaaccccgtctctactaaaaatacagaaattagctgggcatggtggtggacaactgtaatcccagctacttgggaggctgagtcagggagaacagcttgaa-ccaggaggcagaggttgcaacgagccgagatcgcgccattacactccagcctggtcaacaagagtgaaact-cctctcg-----------aaacaaaataaaggttatagtgaacaggcgaaattaattttaatgccttccattttgaccgatatatctaaaatattaccatttcaacatgtaatATGTAATTATGTGCt s panTro4.chr2A 22214385 339 - 113622374 gtggatcatttgaggtcaggagttaagagaccaccctgaccaatatggtgaaaccccgtctctactaaaaatacagaaattagctgggcatggtggtggacaactgtaatcccagctacttgggaggctgagtcagggagaacagcttgaa-ccaggaggcagaggttgcaacgagccgagatcgcgccattacactccagcctggtcaacaagagtgaaact-cctctcg-----------aaacaaaataaaggttatagtgaacaggtgaaattaattttaatgccttccattttgaccgatatatctaaaatattaccatttcaacatgtaatATGTAATTATGTGCt i panTro4.chr2A C 0 C 0 s ponAbe2.chr7 7586218 337 - 157549271 gtggatcatttgaggtcaggagtt-agagaccagcctgaccaatatggtgaaaccccgtctctattaaaaatacagaaattagctgggcatggtggtggtcaactgtaatcccagctacttgggaggctgaggca-ggacaacagcttgaa-ccaggaggcagaggttgcaacgagccgagatcgcgccattacactccagcctgggcaacaagagtgaaact-cctctca-----------aaacaaaataaaggttatagtgaacaggcgaaattaattttaatgccttccatttcgaccgatatatctaaaatattaccatttcaacatgtaatATGTAATTATGTGCt i ponAbe2.chr7 C 0 C 0 s nomLeu3.chr13 7286412 337 - 110113093 gtgggtcatttgaggtcaggagtt-agagaccagcccgaccaatatggtgaagccccatttctacaaaaaatacagaaattagctgggcatggtggtagacaactgtaatcccagctacttggaaggctgaggca-ggagaatagcttaaa-ccaggaggcagaggttgcagtgagccgagatcacgccattacactccagcctgggcaacaagagcgaaact-cccctga-----------aaacaaaataaaggttatagtgaacaggcgaaattaattttaatgccttccatttcaaccgatatatctaaaatattaccatttcaacatgtaatATGTTATTATGTGCt i nomLeu3.chr13 C 0 C 0 s rheMac3.chr3 7194478 338 - 198365852 gtggatcacttgaggtcaggagtt-agagaccagcctgaccaacattgtgaaaccccatctctacgaaaaatacaaaaattagctgggtgtggtggtggacacttgtgatcccagctacttgggaggctgaggca-ggagaatagcttgaa-tcgggaggctgaggttgcagtgagccgagattgcaccattacactccagcctgggcaacaagagtgaaactccctctca-----------aaacaaaacaaaggttatagtgaacaggctaaattaattttaatgcctttcattttgactgatatatctaaaatattaccatttcaacatgtaatatataaTTACGTGTt i rheMac3.chr3 C 0 C 0 s macFas5.chr3 7360097 338 - 192294377 gtggatcacttgaggtcaggagtt-agagaccagcctgaccaacattgtgaaaccccatctctacgaaaaatacaaaaattagctgggtgtggtggtggacacttgtgatcccagctacttgggaggctgaggca-ggagaatagcttgaa-tcgggaggctgaggttgcagtgagccgagattgcaccattacactccagcctgggcaacaagagtgaaactccctctca-----------aaacaaaataaaggttatagtgaacaggctaaattaattttaatgcctttcattttgactgatatatctaaaatattaccatttcaacatgtaatatataaTTACGTGTt i macFas5.chr3 C 0 C 0 s papAnu2.chr3 6925012 338 - 180432695 gtggatcacttgaggtcaggagtt-agagaccagcctgaccaacattgtgaaaccccatctctactaaaaatacaaaaattagctgggtgtggtggtggacacctgtgatcccagctacttgggaggctgaggca-ggagaatagcttgaa-tcaggaggctgaggttgcagtgagccgagattgcaccattacactccagcctgggcaacaagagtgaaactccctctca-----------aaacaaaataaaggttaTAGTGAACAggctaaattaattttaatgccTTCCATTTTGACtgatatatctaaaatattaccatttcaacatgtaatatataattacgTGTT i papAnu2.chr3 C 0 C 0 s chlSab2.chr21 6824588 337 - 127223203 gtggatcacttgaggtcaggagtt-agagaccagcctgaccaacatcgtgaaaccccatctctactaaaaatacaaaaattagctgggtgtggtggcggacacctgtaatcccagctacttgggaaactgaggca-ggagaatagcttgaa-ctgggaggctgaggttgcagtgagccgagattgtaccattacactccaccctgggcaacaagagtgaaactccctctca-----------aaacaaaataaaggttatagtgaacaggctaaattaattttaatgccttccattttga-tgatatatctaaaatattaccatttcaacatgtaatATGTAATTATGTGTt i chlSab2.chr21 C 0 C 0 s calJac3.chr8 94487921 350 + 128169293 gtggatcacttgaggtcaggagtt-tgagactagcctggccaatatggtgaaactccatttctactaaaaatacaaaaattagctggacatggtggtggatgcctgtcataccagctacttgggagcccgaggca-ggggaattgtttgaatccaggaggcagaggttgcattgagctgagatcacgccattatactccagcctgggctacaagagtgaaactccctctcagaaaaaaaaagaaaaagaaaaaatgttttagtgaacagacaaaattaattttaataccttccatttcgaccagtatatctaaaatattactatttcaacatgtaatatgtaatcatgtgtt i calJac3.chr8 I 311 C 0 e canFam3.chr16 43588974 174 - 59632846 I a score=4045317.000000 s hg38.chr1_KI270765v1_alt 179833 1224 + 185285 gtattttatgtttgcaggacatctcagttcagactaactacattgcaGATCCCAAGTGTGTGTCATTAAAAT--AGTGATAGATTTGTG-G--------------------------TGTACATACCTATAATATTATCATTTA-----------TAGTTTCTTGATTAGAATTCTGCATAATCAAGTCT-TA---CT-AAGACAGGTTTATTATATTTTCTCATTACTTCTTGGTCTAAAGGAATTCTACCTCTAAAGAGAGAATGAGTTGAATAATAAAATGTCATGACT--CCATTTTGCTG-----------------TAGTATCTTAGCATTAA---T---ATTTGGAATTGTTATTCTAGACCTTAGCAAAAATATATGTTTTGATTATGAATTTTCTGAAGCTTTCCACTTAAGTGTAAAACAAGTGAAAAATATAACTTCGTATTTTGTGTATTTTGCTTTTTATAGGTGTCTACTGCAGATATTTCATCAAATAAGGATGATGAAGAAAACTCTGTGCTCGATATGGTTGTGTTGTTTTCTAGCAGTGACAAATTCACTTTGAATCAGGTTTGAACTTGACAATTTACTGTCTTCCTCATTGAATTCCTCCTTGCACATTTCTGCTTTATCTCATATACACAGAAGTGATCCAATATTTAGCTATAGAGCTATATTAGTTAAGAAGGTATTTTTAAAGTAAAATTTGTAGGTTTT--TAGCTTAGTCTCCATTTAAAA----TATGTTCTGTTTTCTTAACTTCAGGATACATGTGTAGTTTGTGGCAGTTTTGGCCAAGGAGCAGAAGGAAGATTACTTGCCTGTTCTCAGTGTGGTCAGTGTTACCATACATACTGTGTCAGTATTAAGGTAAACATCCTTAAACTGAG--TTAACAAATATGTATTGAATTTTTATTTGGTTTTAGTAGTAACATG-AGCTCCCAGTTCTCACAATTAAGTAT----TATG---ATTATTAAACATATGTGACAGTATTTAAGTA--CTTTAAATACTGCTTTTAAGGGTTTCCTATCTCAAGAAATTTGCTCCTCTATAAA-------TCTTATATTGTACTAA-TATCCTGCTTTTGTCTTGAAAAAGTAAAACATAAAAATATATGCATTTAATTTAAAAGACATTTTATA---CTATTCACAAAGATTTTAGGTTTAGCTGATTCATTTTGTCTGTTGAC----TTATAAAGCTGA---GAACTGGAGTATTTAGTAAAAAATTATTATCCCATTCTGTTCTTTCCCACATTCTGTCTCCTCTGTGCTCACTCATATACAAAATGACATTTTCT s panTro4.chr2A 22214724 1229 - 113622374 gtattttatgtttgcagaacatctcagttcagactaactacattgcaGATCCCAAGTGTGTGTCATTAAAAT--AGTGATAGATTTGTGTG--------------------------TGTACATACCTATAATATTATCATTTA-----------TAGTTTCTTGATTAGAATTCTGCATAATCAAGTCTATAGACCT-AAGACAGGTTTATTATATTTTCTCATTACTTCTTGGTCTAAAGGAATTCTACCTCTAAAGAGAGAATGAGTTGAATAATAAAATGTCATGACT--CCATTTTGCTG-----------------TAGTATCTTAGCATTAA---T---ATTTGGAATTGTTATTCTAGACCTTAGCAAAAATATATGTTTTGATTATGAATTTTCTGAAGCTTTCCAGTTAAGTGTAAAACAAGTGAAAAATATAACTTCGTATTTTGTGTATTTTGCTTTTTATAGGTGTCTACTGCAGATATTTCATCAAATAAGGATGATGAAGAAAACTCTGTGCTCGATATGGTTGTGTTGTTTTCTAGCAGTGACAAGTTCACTTTGAATCAGGTTTGAACTTGACAATTTACTGTCTTCCTCATTGAATTCTTCCTTGCACATTTCTGCTTTATCTCATATACACAGAAGTGATCCAATATTTAGCTATAGAGCTATATTAGTTAAGAAGGTATTTTTAAAGTAAAATTTGTAGGTTTT--TAGCTTAGTCTCCATTTAAAA----TATGTTCTGTTTTCTTAACTTCAGGATATATGTGTAGTTTGTAGCAGTTTTGGCCAAGGAGCAGAAGGAAGATTACTTGCCTGTTCTCAGTGTGGTCAGTGTTACCATCCATACTGTGTCAGTATTAAGGTAAACATCCTTAAACTGAG--TTAACAAATATGTATTGAATTTTTATTTGGTTTTAGTAGTAACATG-AGCTCCCAGTTCTCACAATTAAGTAT----TATG---ATTATTAAACATATGTGACAGTATTTAAGTA--CTTTAAATACTGCTTTTAAGGGTTTCCTATCTCAAGAAATTTGCTCCTCTATAAA-------TCTTATATTGTACTAA-TATCCTGCTTTTGTCTTGAAAAAGTAAAACATAAAAATATATGCATTTAATTTAAAAGACAATTTATA---CTATTCACAAAGATTTTAGGTTTAGCTGATTCATTTTGTCTGTTGAT----TTATAAAGCTGA---GAACTGGAGTATTTAGTAAAAAATTATTAGCCCATTCTGTTCTTTCCCACATTCTCTCTCCTCTGTGCTCACTCATATACAAAATGACATTTTTT i panTro4.chr2A C 0 C 0 s ponAbe2.chr7 7586555 1223 - 157549271 gtattttatgtttgcaggacatctcagttcagactagctacattgcaGATCCCAAGTGTGTGTCATTCAAAT--AGTGATAGATTTGTGTG--------------------------TGTACATACATATAATATTATCATTTA-----------TAGTTTCTTGATTAGAATTCTGCATAATCAAGTCT-TA---CT-AAGACAGGTTTATTATATTTTCTCATTACTTCTTGGTCTATAGGAATTCTACCTCTAAAGAGAGAATTAGGTGAATAATAAAATGTCATGACT--CCATTTTACGG-----------------TAGTATCTTAGCATTAA---T---ATTTGGAATTGTTATTCTAGACCTTAGCAAAAATGTATGTTTTGATTATGAATTTTCTGAAGCTTTCCAGTTAAGTGTAAAACAAGTGAAAAATATAACTTCGTATTTTGTGTATTTTGCTTTTTATAGGTGTCTACTGCAGATATTTCATCAAATAAGGATGATGAAGAAAACTCTATGCACAATACAGTTGTGTTGTTTTCTAGCAGTGACAAGTTCACTTTGAATCAGGTTTGAACTTGACAATTTACTGTCTTCCTCATTGAATTCCTCCTTGCACATTTCTGCTTTATCTCATATACACAGAGGTCATCCAGTATTAAGCTATAGAGCTATATTAGTTAAGAAGGTATTTTTAAAGTAAAATTTGTAGGTTTT--TAGCTTAGTCTCCATTTAAAA----TATGTTCTGTTTTCTTAACTTCAGGATATGTATGTAGTTTGTGGCAGTTTTGGCCAGGGAGCGGAAGGAAGATTACTTGCCTGTTCTCAGTGTTGTCAGTGTTACCATCCATACTGTGTCAGTATTAAGGTAAACATCCTTCAATTGAG--TTAACAAATATGTATTGAATTTTTATTTGGTTTTAGTAGTAACATG-AGCTCCCAGTTCTCACAATTAAGTAT----TATG---ATTATTAAACATATGTGACAGTATTTAAGTA--CTTTAAATACTGCTTTTAAGGGTTTCCTATCTCAAGAAATTTGCTCCTCTATAAA-------TCTTATATTGTACTAA-TATCCTGCTTTTGTCTTGAAAAAGTAAAACATAAAAATATATGCATTTAATTTAAAAGACAATTTATA---CTATTCACAAAGATTTTAGGTTTAACTGATTCATTTTGTCTGTTGAT----TTAAAAAGCTGA---GAACTGGAGTATTTAGTAAAAAATTATTAGCCCATTCTGTTCTTTCCCGCATTCTCTCTCCTC--TGCTCACTGGTATACAAAAAGACATTTTCT i ponAbe2.chr7 C 0 C 0 s nomLeu3.chr13 7286749 1219 - 110113093 gtattttatgtttgcaggacatctcagttcagactagctacattgcaGATCCCAAGTGTGTGTCACTAAAAT--AGCGATAGATTTGTATG--------------------------TGTACATACAT---ATATTATCATTTA-----------TAGTTTCTTGATTAGAATTCTGCATAACCAAGTCT-TA---CT-AAGACAGGTTTATTATATTTTCTCATTACTTCTTGGTCTATAGGAATTCTAACTCTAAAGAGAGAATTAGGTGAATAATAAAATGTCATGACT--CCGTTTTACGG-----------------TAGTATCTTAGCATTAA---T---ATTTGGAATTGTTATCCTAGACCTTAGCAAAAA--TATGTTTTGATTATGAATTTT-TGAAGCTTTCCAGTTAAGTGTAAAACAAGTGAAAAATATAACCTCGTATTTTGTGTATTTTGCTTTCTATAGGTGTCTACTGCAGATATTTCATCAAATAAGGATGATGAAGAAAACTCTATGCACAATACAGTTGTGTTGTTTTCTAGCAGTGACAAGTTCACTTTGAATCAGGTTTGAACTTGACAATTTACTGTATTCCTCATTGAATTCCTCCTTGCACATTTCTACTTTATCTCATATACACAGAAGTCATCCAATATTTAGCTATAGAGCTATATTAGTTAAGAAGGTATTTTTAAAGTAAAATTTGTAGGTTTT--TAGCTTAGTCTCCATTGAAAA----TATGTTCTGTTTTCTTAACTTCAGGATATGTGTGTAGTTTGTGGCAGTTTTGGCCAAGGAGCAGAAGGAAGATTACTTGCCTGTTCTCAGTGTGGTCAGTGTTACCATCCATACTGTGTCAGTATTAAGGTAAACATCCTTAAATTGAG--TTAACAAAAATGTATTGAATTTTTATTTGGTTTTAGTAGTAACATG-AGCTCCCAGTTCTCACAATTAAGTAT----TATG---ATTCTTAAACATCTGTGACAGTATTTAAGTA--CTTTAAATACTGCTTTTAAGGGTTTGCTATCTCAAGAAATTTGCTCCTCTATAAA-------TTTTATATTGTACTAA-TATCCTGCTTTTGTCTTGAAAAAGTAAAACATAAAAATATATGCATTTAATGTAAAAGACAATTTATA---CTATTCACAAAGATTTTAGGTTTAGCTGATTCATTTTGTCTGTTGAT----TTAAAAAGCTGA---GAACTGGAGTATTTAGTAAAAAATTATTAGCCCATTCTGTTCTTTCCCGCATTCTCTCTCCTCTGTGCTCACTCGTATACAAAAAGACATTTTCT i nomLeu3.chr13 C 0 C 0 s rheMac3.chr3 7194816 1244 - 198365852 gtattttatgcttacagtacatctcagttcagactagctacatAGCAGATCCCAAGTGTGTGTCACTAAAATAGAGTGATAGATTTGTGTG--------------------------TGTACATACATATAATATTATCATTTA-----------TAGTTTCTTGATTAGAATTCTGCATGATCAAGTCT-TG---CT-AAGACAGGTTTATTGTATTTTCTCATTACTTCTTGGTCTATAGGAATTCTACCTCTAAAGAGAGAATTAGGTGAATAATAAAATGTTATGACT--CCATTTTATGGNNNNNNNNNNNNNNNNNNAGTATTTTAGCATTAATAGT---ATTTGGAATTGTTATTCTAGACCTTGGCAAAAATATATGTTTTGATTATGAATTTTCTGAAGCTTTCCAGTTAAGTGTAAAACAAGTGAAAAATAAAACTTCGTATTTTGTGTATTTTGCTTTTTATAGGTGTCTGCTGCAGATATTTCATCAAATAAGGATGATGAAGAAAACTCTATGCACAATACAGTTGTGTTGTTTTCTAGTAGTGACAAGTTCACTTTGAATCAGGTTTGAACTTAACAATTTACTGTCTTCCTCATTGAATTCCTCCTTGCACATTTCTGCTTTATCTC--ATATACAGAAGTCATCCAATATCTAGCTATAGAGCTATATTAGTTAAGAAGGTATTTTTAAAGTAAAATTTGTAGATTTT--TAGCTTAGTCTCCATTTAAAA----TATGTTCTGTTTTCTTAACTTCAGGATATGTGTGTAGTTTGTGGCAGTTTTGGCCAAGGAGCAGAAGGAAGATTACTTGCCTGTTCTCAGTGTGGTCAGTGTTACCATCCATACTGTGTCAGTATTAAGGTAAACATCCTTAAATTGAA--TTAACAAAAATGTAGTGAATTTTTA-TTGATTTGAGTGGTAACATG-AACTCCCAGTTCTCACAGTTAAGTAT----GATG---AATACTATACATATGTGACAGTATTTAAGTA--CTTTAAATACTGCTTTTAAGGGTTTGCTATCTCAAGAAATTTGCTCCTCTATAAA-------TCTTATATTGTACTAA-TATCCTGCTTTTGTCTTGAAAAAGTAAAACATAAAAATATGCGCATTTAACTTAAAAGATAATTTATA---CTATTCACAAAGATTTTAGGTTTAACTGATTCATTTTGTCTGTTGAT----TTAAAAAGCTGA---GAACTGGAGTATTTAGTAAAAAATTATTAGCCCATTCTGTTCTTTCCCACATTCTGTTTCCTCTATGCTCACTCGTATACAAAAAGACATTTTCT i rheMac3.chr3 C 0 C 0 s macFas5.chr3 7360435 1228 - 192294377 gtattttatgcttacagtacatctcagttcagactagctacatAGCAGATCCCAAGTGTGTGTCACTAAAATAGAGTGATAGATTTGTGTG--------------------------TGTACATACATATAATATTATCATTTA-----------TAGTTTCTTGATTAGAATTCTGCATGATCAAGTCT-TG---CT-AAGACAGGTTTATTGTATTTTCTCATTACTTCTTGGTCTATAGGAATTCTACCTCTAAAGAGAGAATTAGGTGAATAATAAAATGTTATGACT--CCATTTTATGG-----------------TAGTATTTTAGCATTAATAGT---ATTTGGAATTGTTATTCTAGACCTTGGCAAAAATATATGTTTTGATTATGAATTTTCTGAAGCTTTCCAGTTAAGTGTAAAACAAGTGAAAAATATAACTTCGTATTTTGTGTATTTTGCTTTTTATAGGTGTCTGCTGCAGATATTTCATCAAATAAGGATGATGAAGAAAACTCTATGCACAATACAGTTGTGTTGTTTTCTAGTAGTGACAAGTTCACTTTGAATCAGGTTTGAACTTAACAATTTACTGTCTTCCTCATTGAATTCCTCCTTGCACATTTCTGCTTTATCTC--ATATACAGAAGTCATCCAATATCTAGCTATAGAGCTATATTAGTTAAGAAGGTATTTTTAAAGTAAAGTTTGTAGATTTT--TAGCTTAGTCTCCATTTAAAA----TATGTTCTGTTTTCTTAACTTCAGGATATGTGTGTAGTTTGTGGCAGTTTTGGCCAAGGAGCAGAAGGAAGATTACTTGCCTGTTCTCAGTGTGGTCAGTGTTACCATCCATACTGTGTCAGTATTAAGGTAAACATCCTTAAATTGAA--TTAACAAAAATGTAGTGAATTTTTATTTGATTTGAGTGGTAACATG-AACTCCCAGTTCTCACAGTTAAGTAT----GATG---AATACTATACATATGTGACAGTATTTAAGTA--CTTTAAATACTGCTTTTAAGGGTTTGCTATCTCAAGAAATTTGCTCCTCTATAAA-------TCTTATATTGTACTAA-TATCCTGCTTTTGTCTTGAAAAAGTAAAACATAAAAATATGTGCATTTAACTTAAAAGATAATTTATA---CTATTCACAAAGATTTTAGGTTTAACTGATTCATTTTGTCTGTTGAT----TTAAAAAGCTGA---GAACTGGAGTATTTAGTAAAAAATTATTAGCCCATTCTGTTCTTTCCCACATTCTCTTTCCTCTATGCTCACTCGTATACAAAAAGACATTTTCT i macFas5.chr3 C 0 C 0 s papAnu2.chr3 6925350 1227 - 180432695 GTATTTTATGCTTACAGTACATCTCAGTTCAGACTAGCTACATAGCAGATCCCAAGTGTGTGTCACTAAAATAGAGTGATagatttgtgtg--------------------------tgtacatacatataatattatCATTTA-----------TAGTTTCTTGATTAGAATTCTGCATGATCAAGTCT-TG---CT-AAGACAGGTTTATTGTATTTTCTCATTACTTCTTGGTCTATAGGAATTCTACCTCTAAAGAGAGAATTAGttgaataataaaatgttatgacT--CCATTTTATGG-----------------TAGTATTTTAGCATTAATAGT---ATTTGGAATTGTTATTCTAGACCTTggcaaaaatatatgttttgatTATGAATTTTCTGAAGCTTTCCAGTTAAGTGTAAAACAAGTGAAAAATATAACTTcgtattttgtgtattttgctttttataggTGTCTGCTGCAGATATTTCATCAAATAAGGATGATGAAGAAAACTCTATGCACAATACAGTTGTGTTGTTTTCTAGTAGTGACAAGTTCACTTTGAATCAGGTTTGAACTTAACAATTTACTGTCTTCCTCATTGAATTCCTCCTTGCACATTTCTGCTTTATCTC--ATATACAGAAGTCATGCAATATCTAGCTATAGAGTTATATTAGTTAAgaaggtatttttaaagtaaaatttgtaGATTTT--TAGCTTAGtctccatttaaaa----tatgttctgtTTTCTTAACTTCAGGATATGTGTGTAGTTTGTGGCAGTTTTGGCCAAGGAGCAGAAGGAAGATTACTTGCCTGTTCTCAGTGTGGTCAGTGTTACCATCCATACTGTGTCAGTATTAAGGTAAACATCCTTAAATTGAA--TTAAC-AAAATGTagtgaatttttatttgatttgagtGGTAACATG-AACTCCCAGTTCTCACAGTTAAGTAT----GATG---AATATTATACATATGTGACAGTATTTAAGTA--CTTTAAATACTGCTTTTAAGGGTTTGCTATCTCAAGAAATTTGCTCCTCTATAAA-------TCTTATATTGTACTAA-TATCCTGCTTTTGtcttgaaaaagtaaaacataaaaatatgtgcatttaacttaaaagataatttata---ctATTCACAAAGATTTTAGGTTTAACTGATTCATTTTGTCTGTTGAT----TTAAAAAGCTGA---GAACTGGAGTATTTAGTACAAAATTATTAGCCCATTCTGTTCTTTCCCACATTCTCTTTCCTCTATGCTCACTCATATACAAAAAGACATTTTCT i papAnu2.chr3 C 0 C 0 s chlSab2.chr21 6824925 1230 - 127223203 gtattttatgcttacagtacatctcagttcagactagctacatAGCAGATCCCAAGTGTGTGTCACTAAAATAGAGTGATAGATTTGTGTG--------------------------TGTACATATATATATTATTATCATTTA-----------TAGTTTCTTGATTAGAATTCTGCATGATCAAGTCT-TG---CT-AAGACAGGTTTATTATATTTTCTCATTACTTCTTGGTCTATAGGAATTCTACCTCTAAAGAGAGAATTAGGTGAATAATAAAATGTTATGACT--CCATTTTATGG-----------------TAGTATTTTAGCATTAATAGT---ATTTGGAATTGTTATTCTAGACCTTGGCAAAAATACATGTTTTGATTATGAATTTTCTGAAGCTTTCCAGTTAAGTGTAAAACAAGTGAAAAATATAACTTCGTATTTTGTGTATTTTGCTTTTTATAGGTGTCTGCTGCAGATATTTCGTCAAATAAGGATGATGAAGAAAACTCTATGCACAATACAGTTGTGTTGTTTTCTAGTAGTGACAAGTTCACTTTGAATCAGGTTTGAACTTAACAATTTATTGTCTTCCTCATTGAATTCCTTCTTGCACATTTCTGCCTTATCTCATATATACAGAAGTCATCCAATATTTAGCTATAGAGCTATATTAGTTAAGAAGGTATTTTTAAAGTAAAATTTGTAGATTTT--TAGCTTAGTCTCCATTTAAAA----TATGTTCTGTTTTCTTAACTTCAGGATATGTGTGTAGTTTGTGGCAGTTTTGGCCAAGGAGCAGAAGGAAGATTACTTGCCTGTTCTCAGTGTGGTCAGTGTTACCATCCATACTGTGTCAGTATTAAGGTAAACATCCTTAAATTGAG--TTAACAAAAATGTAGTGAATTTTTATTTGATTTGAGTGGTAACATG-AACTCCCAGTTCTCACAGTTAAGTAT----GATG---AATATTATACATATGTGACAGTATTTAAGTA--CTTTAAATACTGCTTTTAAGGGTTTGCTATCTCAAGAAATTTGCTCCTCTATAAA-------TCTTATATTGTACTAA-TATCCTGCTTTTGTCTTGAAAAAGTAAAACATAAAAATATGTGCATTTAACTTAAAAGATAATTTATA---CTATTCACAAAGATTTTAGGTTTAACTGATTCATTTTGTCTGTTGAT----TTAAAAAGCTGA---GAACTGGAGTATTTGGTAAAAAATTATTAGCTCGTTCTGTTCTTTCTCACATTCTCTCTCCTCTATGCTCACTCGTATACAAAAAGACATTTTCT i chlSab2.chr21 C 0 C 0 s calJac3.chr8 94488271 1223 + 128169293 gtattttatgcttgcaggacatctcagtttggaccagctacactgcaGATCCCAAGTGTGTGTCACTAAAATAGAGTGATAGATTTATGTT--------------------------TGTGCACACATA------TATCATCTG-----------TAGTGTCTTGATTGGAATTCTGTGTAATCAAGTCT-TA---ATAAAGACAAGTTTA---TATTTTCTCATTACTTCTTGGTCTATAGGAATTGTAACTCTAAAGAGAGAATTAGGTGAATTATAAAATGTCATGAGT--CTGTTTTATAG-----------------TAGTATCTTAGCATTTATAAT---ATTTGGAATTGTTAGTCTAGACCTTAGCAAAAATATATGTTTTGATTATGAATTTTCTGAAGCTTTCCAGTTGAGTGTAAAACAAGTGAAAAATATAACTTCATATTTTGTGTATTTTGCTTTTTATAGGTGTCTACTGCAGACATTTCATCAAATAAGGATGATGAAGAGAACTCTATGCACAATACAGTTGTGTTATTTTCTAGTAGTGACAAGTTCACTTTGAATCAGGTTTGAACTTAACAATTTACTGTCTTCTATGTTGAATTTCTCCTTGTACATTTCTACTTCATCTCATATGCACAGAAGTCATTTAATATTTAGCTAAAGAGCTATA----TTAAGAAGGTATTTTTAAAATAAAATTTGTAGATTCT--TAGCTTAGTCTCCATTTAAAA----TATGTTCTGTTTTCTTAACTTCAGGATATGTGTGTAGTTTGTGGCAGTTTTGGCCAAGGAGCAGAAGGAAGATTACTTGCCTGTTCTCAGTGTGGTCAGTGTTATCATCCATACTGTGTCAGTATTAAGGTAAACATGATTAAATTGAG--TTAACAAAAATGTAATGAATTTTTATTTGATTTCAATAGTAACTTGCAGTTCCCAGTTGTCACAATTAAGTAT----TATGATTATTATTATACATATGTGACATTATTTAAATA--CTTTAAATACTGCTTTTAAGGGTTTGGTATCTCAAGAAATTTGCTCCTCTATAAATCTGTGGTCTTCCATTGTACTAA-TATTCTGCTTTTGTCTTGGAAAAGTAAAACATAAAGATGTATGCATTTAATTTAAAAGAC----TATA---ATATTCACAGAGGTTTTAGGTTTAGCTGGTTCATTTTGTCTGTTGA-----TTAAAAAGTT-A---GAACTGGAGTACGTAGTAAAAAATTATTAGCCCATTCTGTTCTTTCTTACATTCTCTCTCCTCTTTGCGCACTCGTATACTAAAGGACATTTTCT i calJac3.chr8 C 0 C 0 s canFam3.chr16 43589148 1217 - 59632846 gtattttatacttctagcacatctcagttttgactagcaggattgcaggtT-----TGAGAGTTACTGGAATGGAGTGTTAGAATTATATGTAGGTATATGTATGTCGTGGTATATATGTATACACACACACAAATATAATACAGTTCCTTTTGTTTGTTTCTTCATAAAATTTATGGCTAATTAAGTCC-TAA--TT-AAGGGTGGTTTA----ATTTTCTCATTG-GTCCTGATCTATGGGACTTGTAACTCTCTTCA---CTTCAGGTAA---CTGAAGTGTCAGGACTTACACCTTTATGA-----------------TATTATCTTGGCAATGATAATCTAATTTGGAGTTGTTACTCTGAGACTTGGCAGAAGT-TGTATTTTACATATGAATCTTCTCATGCTTC----TTAAGTGTGCTATAAGTGAAGAGTGTGACTGTGCACTC----TCTTTTGCTTTCTGTAGGTGTCTGCTACAGATGTTTCATCGAATAAGGATGAAGAAGAAAACTCCATGCACAACACGGTGGTGCTGTTTTCTAGCAGCGACAAGTTCACCTTGCACCAGGTTTGAGCTCA-------GTTCTCCTCCACTTCGAGTTCCTATCTCCCCCTTTCTGCTGTATCCCACATGCACTGAAGTCCTCTGCTCTTTAGCTTTAGAGCTCTATGAGCTAA------------AAAATAAAACTAGTACATTTTTATAACTGTGTCTTCGATGTCAATTACTATGTTC-ATGTTTTTAATTTCAGGATATGTGTGTAGTTTGTGGCAGTTTCGGCCAAGGGGCAGAGGGAAGACTGCTTGCCTGCTCTCAGTGTGGCCAGTGTTACCATCCGTACTGTGTCAGTATTAAGGTAAATAGACATACATTTAAATCTGTTAAAAATGTATTGAAATT----------------------TG-A-----TATTTCTTATAATTAATCATTTGCTAGG---ATTATTAGACA--TGTGACAGtatttatttaatatttatatattaCCTTTCAAG---TGTTAACTGAAAAAATTAACTC--CTATAAATCTGTGCTCTTAAATTGTAGTGGTTATCCTGC---TGTCTTGAAAAACTAAAA-ATAAAAA---ATGCATAT-CTTTAAAAGATACTTCATATTTTTATTTGTTAAGGAATGAGGTTTAGTCAATCCATTCTGTCGGCTGATAATAAAAAAAAGTTGACACCAACCACAGACCTTAATAAAAATCCATTCATTCA-CCTGTCCCTTCCCATGTTCATTCTTCTGAATCCTCACCTGTATATGAAAGGACATTTTCT i canFam3.chr16 I 174 I 786 a score=593665.000000 s hg38.chr1_KI270765v1_alt 181057 201 + 185285 CCTTATAGCCAAAAGAAAGAAAACAAGTGTCATATTTAATGCAATCGGTAATAATCGAGAGTCAGCACTGCTCACTTTCAAGCATTTCAGGATAGAGGCTTTCTGGGGAACCTTTTAAGTGGTATCGTGTGCTTGGTTTTAAATATGGACAGGTCTCAATACTTCACTAGTTGTATCTAAGGTTCTTGGTTTTTTCTTTTT s panTro4.chr2A 22215953 201 - 113622374 CCTTATAGCCAAAAGAAAGAAAACAAGTGTCATATTTAATGCAATTGGTAATAATCGAGAGTCAGCACTGCTCACTTTCAAGCATTTCAGGATAGAGGCTTTCTGGGGAACCTTTTAAGTGGTATCGTATGCTTGGTTTTAAATATGGACAGGTCTCAATACTTCACTAGTTGTATCTAAGGTTCTTGGTTTTTTCTTTTT i panTro4.chr2A C 0 C 0 s ponAbe2.chr7 7587778 201 - 157549271 CCTTATAGCCAAAAGAGACAAAGCAGGTGTCATATTTAATGCAATTGGTAATAATCGAGAGTCAGCACTGCTCACTTTCAAGCATTTCAGGATAGAGGCTTTCTGGGGAACCTTTTAAGTGGTATCGTGTGCTTGGTTTTAAATATGGACAGGTCTCAATACTTTAGTAGTTGTATCTAAGGTTCTTGGTTTTTTCTTTTT i ponAbe2.chr7 C 0 C 0 s nomLeu3.chr13 7287968 201 - 110113093 CCTTATAGCCAAAAGAAACAAAACAAGTGTCATATTTAATGCAATTGGTAGTAATCGAGAGTCAGCACTGCTCACTTTCAAGCATTTCAGGATAGAGGCTTTCTGGGGAACCTTTTAAGTGGTATCATGTGCTTGGTTTTAAATATGGACAGGTCTCAATACTTCAGTAGTTGAATCTAAGGTTCTTGGTTTTTTCTTTTT i nomLeu3.chr13 C 0 C 0 s rheMac3.chr3 7196060 195 - 198365852 CCTTATAGCCAAAAGAAACAAAACAAATGTCATATTTAATGCAATTGGTAATAATCGAGAGTCAGCACTGCTCACTTTCAAGCATTTCAGGATAGAGGCTTTCTGGGGAACCTTTTAAGTGGTATCGTGTGCTTGGTTTTAAATATGGACAGGTCTCAATACTTCAGTAGTTG------AGGTTCTTGATGTTTTCTTTTT i rheMac3.chr3 C 0 I 305 s macFas5.chr3 7361663 201 - 192294377 CCTTATAGCCAAAAGAAACAAAACAAATGTCATATTTAATGCAATTGGTAATAATCGAGAGTCAGCACTGCTCACTTTCAAGCATTTCAGGATAGAGGCTTTCTGGGGAACCTTTTAAGTGGTATCGTGTGCTTGGTTTTAAATATGGACAGGTCTCAATACTTCAGTAGTTGAATCTAAGGTTCTTGATGTTTTCTTTTT i macFas5.chr3 C 0 I 304 s papAnu2.chr3 6926577 201 - 180432695 CCTTAtagccaaaagaaacaaaacaaatgtcaTATTTAATGCAATTGGTAATAATCGAGAGTCAGCACTGCTCACTTTCAAGCATTTCAGGATAGAGGCTTTCTGGGGAACCTTTTAAGTGGTATCATGTGCTTGGTTTTAAATATGGACAGGTCTCAATACTTCAGTAGTTGAATCTAAggtttttgatgttttcttttt i papAnu2.chr3 C 0 C 0 s chlSab2.chr21 6826155 201 - 127223203 CCTTATAGCCAAAAGAAACAAAACAAGTGTCATATTTAATGCAATTGGTAATAATCGAGAGTCAGCACTGCTCACTTTCAAGCATTTCAGGATAGAGACTTTCTGGGGAACCTTTTAAGTGGTATCGTGTGCTTGGTTTTAAATATGGACAGGTCTCAATACTTCAGTAGTTGAATCTAAGGTTCTTGATTTTTTCTTTTT i chlSab2.chr21 C 0 C 0 s calJac3.chr8 94489494 179 + 128169293 CCTTATAGCCAAAAGAAACAAAACAAATGTCATATTTAATGTAATGAGTAAT------GAGTCAACACTGCTTATTTTCAAGCATCT-AGGATAGAGGCTTTCCCAGGAACCTTTTAAGTAGTATCAGGTGCTTGGCTTTAAATATGGGCAGGTCTCAATACTTTA---------------GTTCTTTTTTTTTTCTTTTT i calJac3.chr8 C 0 C 0 e canFam3.chr16 43590365 786 - 59632846 I a score=1424918.000000 s hg38.chr1_KI270765v1_alt 181258 483 + 185285 AAGAACTCAGTCTTAATAAAACTTACATATTTGAATAAAGTGTCATGGCCACTG-----GAAGCAAGCATGGAGGTATAGCTGTACAGCAGAGGTCTTAAACTGTATACTCCACAAGGAAATCTTTTCTAGTATTGCCATACCATGTAATATAAATACTAACCTCAGTTTCAATAATAGGTTGTGAACCATGAGTGATTTTTATACCATTCTCCCCTGCCCTTCAGACATCACTGTGTTATATCATTG---TCAGTAAAATGTCAGTATAGTAAGCAAATCAACATTATCTCCTTCAGAATTCTTTGTTGATAACTACACTAGTATTTATTTTATAGGGTAATACAGGTTTTTGTGAATTTAGGAATCAAAATGAAAGATTGTAATTAATACTATCCAAAATAGAAGACTAGTACGGTTAATTTCTGTAGTTTTTTAAAATTAGTTGCTCATGCT-ATGTGACTGAAAA--ACACAGAGTATATAAAGCCAATT s panTro4.chr2A 22216154 483 - 113622374 AAGAACTCAGTCTTAATAAAACTTACATATTTGAATAAAGTGTCATGGCCACTG-----GAAGCAAGCATGGAGGTATAGCTGTACAGCAGAGGTCTTAAACTGTATACTCCACAAGGAAATCTTTTCTAGTATTGCCATACCATGTAATATAAATACTAACCTCAGTTTCAATAATAGGTTGTGAACCATGAGTGATTTTTATACCATTCTCCCCTGCCCTTCAGACATCACTGTGTTATATCATTT---TCAGTAAAATGTCAGTATAGTAAGCAAATCAACATTATCTCCTTCAGAATTCTTTGTTGATAACTACACTAGTATTTATTTTATAGGGTAATACAGGTTTTTGTGAATTTAGGAATCAAAATGAAAGATTGTAATTAATACTATCCAAAATAGAAGACTAGTACGGTTAATTTATGTAGTTTTTTAAAATTAGTTGCTCATGGT-ATGTGACTGAAAA--ACACAGAATATATAAAGCCAATT i panTro4.chr2A C 0 C 0 s ponAbe2.chr7 7587979 483 - 157549271 AAGAACTCAGTCTTAATAAAACTTACATATTTGAATAAAGTGTCATGGCCACTG-----GAAGCAAGCATGGAGGTATAGCTGTACAGCAGAGGTCTTAAACTGTATACTCCACAAGTAAATCTTTTCTAGTACTGCCATACCATGTAATATAAATACTAACCTCAGTTTCAATAATAGGTTGTGAACCATGAGTGATTTTTATACCTTTCTCCCCTGCCCTTCAAACATCACTGTATTATATCATTG---TCAGCAAAATGTCAGTATAGTAAGCAAATCAACATTATCTCCTTCAGAATTCTTTGTTGATAACTACCCTGGTATTTATTTTATAGGGTAATACAGGTTTTTGTGAATTTAGGAATCAAAATGAAAGACTGTAATTAATACTATCCAAAATAGAAGACTAGTACGGTTAATTTATGTAGTCTTTTAAAATTAGTTGCTCATGGT-ATGTGACTGAAAA--ACACAGAGTATATAAAGCCAATT i ponAbe2.chr7 C 0 C 0 s nomLeu3.chr13 7288169 485 - 110113093 AAGAACTCAGTCTTAATAAAACTTACATATTTGAATAAAGTGTCATGGCCACTG-----GAAGCAAGCATGGAGGTATAGCTGTACAGCAGAGGTCTTAAACTGTATACTCCACAAGTAAATCTTTTCTAGTACTGCCATACCATGTAATATAAATACTAACCTCAGTTTCAGTGATAGGTTGTGAACCATGAGTGATTTTTATACCTTTCTCCCCTGCCCTTCAAACATCACTGTATTATATCATTG---TCAGTTAAATATCAGTATAGTAAGCAAATCAACATTATCTCCTTCAGAATTCTTTGTTGATACCTATACTAGTATTTATTTTATAGGGTAATACAGGTTTTTGTGAATTTAGGAATCAAAATGAAAGATAGTAATTAATACTACCCAAAATAGAAGACTAGTATGGTTAATTTATGTAGTCTTTTAAAATTAGTTGCTCATGGT-ATGTGACTGAAAAAGACACAGAGTATATAAAGCCAATT i nomLeu3.chr13 C 0 C 0 s rheMac3.chr3 7196560 475 - 198365852 AAGAACTCAGTCTTAATAAAACTTACATATTTGAATAAAGTGTCATGGCCACTG-----GAAGCAAGCATGGAGGTATAGCTGTACAGCAGAGGTCTTAA----TGTACTCCACAAGTAAATCTTTTCTAGTACTGCCATACCATGTACTATAAATACTAACCTCAGTTTCAGTGATAGGTCATGAACTATGAGTGATTTTTATACCTTTCTCCCCTGCCCTTCAAACATGACTGTATTATATCATTG---TCAGTAAAATGTCAGTGTAGTAAATAAATCAACATTATCTCCCTCAGAATTCTTTGTTGATAACTACACTAGTATTTCTTTTATAGGGTATTATAGGTTTTTGTGAATTTAGGAATCAAAATGAAAGATTATAATTAATACTATCCAAAATAGAAGACTAGTACGGTTAATTTATGTAGTCTTTTAAAATTAGTTGCTCGTGAC-ATTTGACTGAAAA------AGAGTATATAAAGTCAATT i rheMac3.chr3 I 305 C 0 s macFas5.chr3 7362168 475 - 192294377 AAGAACTCAGTCTTAATAAAACTTACATATTTGAATAAAGTGTCATGGCCACTG-----GAAGCAAGCATGGAGGTATAGCTGTACAGCAGAGGTCTTAA----TGTACTCCACAAGTAAATCTTTTCTAGTACTGCCATACCATGTACTATAAATACTAACCTCAGTTTCAGTGATAGGTCATGAACTATGAGTGATTTTTATACCTTTCTCCCCTGCCCTTCAAACATGACTGTATTATATCATTG---TCAGTAAAATGTCAGTGTAGTAAATAAATCAACATTATCTCCCTCAGAATTCTTTGTTGATAACTACACTAGTATTTCTTTTATAGGGTATTATAGGTTTTTGTGAATTTAGGAATCAAAATGAAAGATTATAATTAATACTATCCAAAATAGAAGACTAGTACGGTTAATTTATGTAGTCTTTTAAAATTAGTTGCTCGTGAT-ATTTGACTGAAAA------AGAGTATATAAAGCCAATT i macFas5.chr3 I 304 C 0 s papAnu2.chr3 6926778 475 - 180432695 aagaactCAGTCTTAATAAAACTTACATATTTGAATAAAGTGTCATGGCCACTG-----GAAGCAAGCATGGAGGTATAGCTGTACAGCAGAGGTCTTAA----TGTACTCCACAAGTAAATCTTTTCTAGTACTGCCATACCGTGTACTATAAATACTAACCTCAGTTTCAGTGATAGGTCATGAACTATGAGTGATTTTTATACCTTTCTCCCCTGCCCTTCAAACATGACTGTATTATATCATTG---TCAGTAAAATGTCAGTGTAGTAAATAAATCAACATTATCTCCCTCAGAATTCTTTGTTGATAACTACACTAGTATTTCTTTTATAGGGTATTACAGGTTTTTGTGAATTTAGGAATCAAAATGAAAGATTATAATTAATACTATCCAAAATAGAAGACTAGTACGGTTAATTTatgtagtcttttaaaattagttgCTCATGGT-ATTTGACTGAAAA------AGAGTATATaaagccaatt i papAnu2.chr3 C 0 C 0 s chlSab2.chr21 6826356 479 - 127223203 AAGAACTCTGTCTTAATAAAACTTACATATTTGAATAAAGTGTCATGGCCACTG-----GAAGCAAGCATGGAGGTATAGCTGTACAGCAGAGGTCTTAA----TGTACTCCACAAGTAAATCTTTTCTAGTACTGCCATACCATGTAATATAAATACTAACCTCAGTTTCAGTGATAGGTCATGAACTATGAGTGATTTTTACACCTTTCTCCCCTGCCCTTCAAACATGACTGTATTATATCATTG---TCAGTAAAATGTCAGTGTAGTAAATAAATCAACATTATCTCCCTCAGAATTCTTTGTTGATAACTACACTAGTATTTCTTTTATAGAGTATTATAGTTTTTTGTGAATTTAGGAATCAGAATGAAAGATTGTAATTAATACTATCCAAAATAGAAGACTAGTATGGTTAATTTATGTAGTTTTTTAAAATTAGTTGCTCGTGGT-ATTTGACTGAAAA--AGACAGAGTATATAAAGCCAATT i chlSab2.chr21 C 0 C 0 s calJac3.chr8 94489673 492 + 128169293 AAGAACTCAGTTTCAATAAAACTTACATATTTGAATAAAGTGTCATGGCCACTTTATTCAAACCAAGCATGGTGGTATAGCTGTACAGCAGGGGTCTTAAACTATATACTCCACAGGTAATTCTTTTCTAGTACTGCCATACCGTGTAATATAAATACTAACCTTAGTTTCCATGATAGGTTGTGAATCATGAGTGATATTTATACCTTTCTCCTGTGCCCTTCAGACATCACTGTATTATATCATTGATTTACCTAAAATGTCAGTGCAGTAATCAAATTCACATTATCTCCCTCAGAATTCTTTGTTGATAACGTCACTACTATTTCTTTTATGGGGTAATACAGGTTTTTGTGAATTTAGGTCTAAAAGTGAAAAATTGTAACTAATACTACCCAAAATAGAAGACTAGTACAGTTAATTTATGTAGTCTTTTAAAATTAGTTGCTCATGGGAATTTGACTGAAAA--AGACACATTCTATAAAGTCAATT i calJac3.chr8 C 0 I 311 e canFam3.chr16 43590365 786 - 59632846 I a score=1101959.000000 s hg38.chr1_KI270765v1_alt 181741 400 + 185285 -AAAAA-T-GGAGTTATATATGCATAAAACATGTTTCTTTTCTTCTTTGTACTTTATATTCTGTATAAAAGTAGCTGCTATCATTAGATTTTGTTTTTTAGAATGCTTAATGTTTTGGACCTAAGGAAATTGAATAAGATCCCTTTCAAGATAGTAATGTATTTCTTTTAACCCATCCAACAATTACCGAattcccattttacagatgag-----tacgacttacataagttaagATTGGACAATTAGTGCACTATCAGACACCTAGTT---------------------ATTCCTGTTTTTAAAAATTATGTGTGGTTCCTTTTAC---ATGACACTGTTTTGGACAGTATAGAATACTGCAGTCTC----ATTGAGAAATACAGCAGTATC------------------------------------------------------TAGAAATATACTAGGGATATATGAATTGGCTCAGCTTGCATTT s panTro4.chr2A 22216637 400 - 113622374 -AAAAA-T-GGAGTTATATATGCATAAAACATGTTTCTTTTCTTCTTTGTACTTTATATTCTGTATAAAAGTAGCTGCTATCATTAGATTTTGTTTTTTAGAATGCTTAATGTTTTGGACCTAAGGAAATTGAATAAGATCCCTTTCAAGATAGTAATGTATTTCTTTTAACCCATCCAACAATTACCGAATTCCCATTTTACAGATGAA-----TACGACTTACATAAGTTAAGACTGGACAATTAGTGCACTATCAGACACCTAGTT---------------------ATTCCTGTTTTTAAAAATTATGTATGGTTCCTTTTAC---GTGACACTGTTTTGGACAGTATAGAATACTGCAGTCTC----ATTGAGAAATACAGCAGTATC------------------------------------------------------TAGAAATATACTAGGGATATGTGAATTGGCTCAGCTTGCATTT i panTro4.chr2A C 0 C 0 s ponAbe2.chr7 7588462 418 - 157549271 -AAAAA---ATAGTTATATATGCATAAAACGTG-----TCTTTTCTTTGTACTTTATATTTTGTATAAAAGTTGCTGCCATCATTAGATTTTGTTTTTTAGAATACTTAATGTTTTGGACCTAAGGAAATTGAATAAGGTCCCTTTCAAGATAGTAATGTATTTCTTTTAACCCATCCAACAATTACCGAattcccattttacagatgag-----tacgacttacataagttaagattggacaattagtgcactatcaaacacctagttactggtagagctagaatttgaattcCTGTTTTTAAAAATTGTGTGTGGTTCCTTTTACACGATGACACTGTTTTGGACAGTATAGAATACTGCAGTCTC----ATTGAGAAATACAGCAGTATC------------------------------------------------------TAGAAATATACTAGGGACATGTGAATTGGCTCAGCTTGCATTT i ponAbe2.chr7 C 0 C 0 s nomLeu3.chr13 7288654 421 - 110113093 -AAAAAAT-AGAGTTATATATGCATAAAACATGTT---TCTTTTCTTTGTACTTTATATTCTGTATAAAAGTTGCTGCTATCATTAGATTTTGTTTTCTAGAATACTTAATGTTTTGGACCTAAGGAAATTGAGTAAGATCCCTTTCAAGATAGTAATGTATTTCTTTTAACCCATCCAACAATTACCGAattcccattttacggatgag-----tatgacttacataagttaagattggacaattagtgcactatcaaacacctagttactggtagagctagaatttgaattcCTGTTTTTAAAAATTATGTGTGGTTCCTTTTACACAATGACACTGTTTTGGACAGTATAGAATACCGCAGTCTC----ATTGAGAAATACAGCAGTATC------------------------------------------------------TAGAAATATACTAGGGATATGTGAATTGGCTCA-CTTGAATTT i nomLeu3.chr13 C 0 C 0 s rheMac3.chr3 7197035 425 - 198365852 -AAAAAATAAGAGTTATATATGCATAAAATATGTTTCTTTTCTTCTTTGTACTT-------TGTATAAAAGTTGCTG---TTACTAGATTTTGTGTTTTAGAATACTTAGTGTTTTGGACCGAAGGAAATTGAATAAGATCCCTTTCAAGGTAGTAATGTATTTCTTTTAACCCATCCAACAATTACCGAattcccattttacagatgagttaaatatgacttacataagttaagattggacaattagttcactgtcaaacacctagttactggtagagctagaatatgaattcCTATTTTTAAAAGTTGTATGTGGTTCCTTTTATACGATGACGCTGTTTTGGACAGTGTAGGATACTGCAGTCTCATTGATTGAGAAATACAGCAGTATC------------------------------------------------------TAGAAATATACTAGGGATATTTGAATTGACTCAGTTTGAATTT i rheMac3.chr3 C 0 C 0 s macFas5.chr3 7362643 425 - 192294377 -AAAAAATAAGAGTTATATATGCATAAAATATGTTTCTTTTCTTCTTTGTACTT-------TGTATAAAAGTTGCTG---TTACTAGATTTTGTGTTTTAGAATACTTAGTGTTTTGGACCGAAGGAAATTGAATAAGATCCCTTTCAAGGTAGTAATGTATTTCTTTTAACCCATCCAACAATTACCGAattcccattttacagatgagttaaatatgacttacataagttaagattggacaattagttcactgtcaaacacctagttactggtagagctagaatatgaattcCTATTTTTAAAAGTTGTATGTGGTTCCTTTTATACGATGACGCTGTTTTGGACAGTGTAGGATACTGCAGTCTCATTGATTGAGAAATACAGCAGTATC------------------------------------------------------TAGAAATATACTAGGGATATTTGAATTGACTCAGTTTGAATTT i macFas5.chr3 C 0 C 0 s papAnu2.chr3 6927253 424 - 180432695 -aaaaaat-agagttatatatgcataaaatatgtttcttttcttctttgtactt-------tgtATAAAAGTTGCTG---TTACTAGATTTTGTGTTTTAGAATACTTAGTGTTTTGGACCGAAGGAAATTGAATAAGATCCTTTTCAAGGTAgtaatgtatttcttttaacCCATCCAACAATTACcgaattcccattttacagatgagttaaATATGACTTACATAAGTTAAGATTGGACAATTAGTTCACTGTCAAACACCTAGTTACTGGTAGAGCTAGAATAtgaattcctatttttaaaagttgtatgtgGTTCCTTTTATACGATGACGCTGTTTTGGACAGTGTAGGATACTGCAGTCTCATTGATTGAGAAATACAGCAGTATC------------------------------------------------------TAGAAATATACTAGGGATATTTGAATTGACTCAGTTTGAATTT i papAnu2.chr3 C 0 C 0 s chlSab2.chr21 6826835 424 - 127223203 -AAAAAAT-AGAGTTATATATGCATAAAATATGTTTCTTTTCTTCTTTGTACTT-------TGTATAAAAGTTGCTG---TTATTAGATTTTGTGTTTTAGAATACTTAGTGTTTTGGACCGAAGGAAATTGAATAAGATCCCTTTCAAGGTAGTAATGTATTTCTTTTAACCCATGCAACAATTACCGAattcccattttacagatgagttaaatatgacttacgtaagttaagattggacaattagttcactgtcaaacacctagttactggtagagctagaatatgaattcCTATTTTTAAAAGTTGTATGTGGTTCCTTTTATACGATGACGCTGTTTTGGACAGTGTAGGATACTGCAGTCTCATTGATTGAGAAATACAGCCGTATC------------------------------------------------------TAGAAATATACTAGGGATATTTGAATTGACTCAGTTTGAATTT i chlSab2.chr21 C 0 C 0 s calJac3.chr8 94490476 483 + 128169293 aaaaaa---aGATTTATATAGGTACAGAGCATATTTCTTTTTTTCTTTCTACTTTATATTATGTATAAAAGTTGCTGTTACCATTAGATTTTGT-TTTTAGAACACTTAATGTTTATGACGTAAGGAAATT-AGTAAGATCCCTCTCAAGATAGTAATGTATTTATTTTAA-CCATCCAACAattattgaattaccatttta-agatgagttaactataacttttataagttaagatcgggcagttagtgcactaccaaacaccgagttactggtcgagctagaatttcaattcatgtttTTAAAAATTATGTGTGGTTTCTTTTATATGATGACACCGTTTTGGACAGTATAGAATACTGCAACTTCATTGATTGAGAAATATAGAAGTATTTAGAAATATACTAGAGATTTTCCAGGCATCAGGGAGGTTAAAAAAAAAAAAGAGTAGAAATATACTAGGGATATGCGAATTGGCTCAGCTTGAATTT i calJac3.chr8 I 311 C 0 e canFam3.chr16 43590365 786 - 59632846 I a score=1654906.000000 s hg38.chr1_KI270765v1_alt 182141 513 + 185285 TTATTGCAGGAGGCAATTGTTTGTGGATAAGTTTGATACCTTTGAAGCTTCTTTTTAAGCTTGCTGGGGCAAGTCTAGAAAGCCTTCACTC-TAAGGTGGATAttttcaaactttatggttttagaacc-ttaacactct-------------------------ttaaaattactgggg--------acgccatagtttttgttcatgaggattttaactatggact-attcagcattttagaaatta-----aa----------actaggaacattttGTaacacaagactacagaagcacaacctgtacaatgtcaatgta---atatta---------tgatacaacatgtagcttctataaacaccactgtataattgtgaataaattaaagtg-aaaaaaggcaaattaaatcttagt----attat--ttaaacttgttttaactttacagacccactggggttccctagtccacattttggtagctgcAGTCC--TAGCATTAGTTTAACCCTATACTTAAGACTTGGCCTTTCTGGGATCACTACTGAATTCTACCC-------------------CCTGTTCACCAGTGTCTTT s panTro4.chr2A 22217037 513 - 113622374 TTATTGCAGGAGGCAATTGTTTGTGGATAAGTTTGATACCTCTGAAGCTTCTCTTTAAGCTTGCTGGGGCAAGTCTAGAAAGCCTTCACTC-TAAGGTGGATAttttcaaactttatggttttagaacc-ttaacactct-------------------------ttaaaattactgggg--------atgccatagtttttgttcatgaggattttaactatggact-attcagcattttagaaatta-----aa----------actaggaacattttGTaacacacgactacagaagcacaacctgtacaatgtcaatgtg---atatta---------tgatacaacatgtagcttctataaacaccactgtataattgtgaataaattaaagtg-aaaaaaggcaaattaaatcttagt----attat--ttaaacttgttttaactttacagacccactgGGGTTCCCTAGTCCACATTTTGGTAGCTGCAGTCC--TAGCATTAGTTTAACCCTATACTTAAGACTTGGCCTTTCTGGGATCACTACTGAATTCTACCC-------------------CCTGTTCACCAGTGTCTTT i panTro4.chr2A C 0 C 0 s ponAbe2.chr7 7588880 521 - 157549271 TTATTGTAGGAGGCAATTGTTTGTGGATAAGTTTGATACCTTTGAAGCTTCTTTTTAAGCTTGCTGGGGCAAGTCTAGAAAGCCTTCACTC-TAAGGTGGATAttttcaaactttatggttttagaacc-ttaacactct-------------------------ttaaaattactggagtttaaaaaactccatagtttttgtttatgaggattttaactatggact-tttcagcattttagaaatta-----aa----------actaggaacattttataatacaagactacagaagcacaacctgtacaatgtcagtgta---atatta---------tgatacaacatgtagcctctgtaaacaccactgtgtaattgtgaatgaattaaagtg-aaaaaaggcaaattaaatcttagt----attat--ttaaacttggtttaacgttacagacccactggggttccctagaccacattttggtagctgcGGTGC--TACCATTAGTTTAACCCTATAGTTAAGACTTGGCCTTTCTGGGATCTCTACTGAATTCTACCT-------------------CCTGTTCACCAGTGTCTTT i ponAbe2.chr7 C 0 C 0 s nomLeu3.chr13 7289075 516 - 110113093 TTATTGTAGGAGGCAATTGTTTGTGGATAAGTTTGATACCTTTGAAGCTTCTTTTTAAGCTTGCTGGGGCAAGTCTAGAAAGCCTTCACTC-TAAGGTGGATAttttcaaacttcatggttttagaacc-ttaacactct-------------------------ttaaaattactgggg--------actccatagtttttgtttatgaggattttaactatggtct-attcagcattttagaaatta-----aa----------actaggaacattttATaacacaagactacagaagcacaacctgtacaatgtcaatgtaatgatatta---------tgatacaacatgtagcctctataaacaccactgtataattgtgaatgaattaaagtg-aaaaaaggcaaattaaatcttagt----attat--ttaaacttgttttaactctacagacccactggggttccctagaccacattttggtagctgcAGTAT--TAGCATTAGTTTAACCCTGTACTTAAGACTTGGCCTTTCTGGGATCTCTACTGAATTGTACCC-------------------CCTGTCCACCAGTGTCTTT i nomLeu3.chr13 C 0 C 0 s rheMac3.chr3 7197460 514 - 198365852 TTGTTGTAGGAGGCGATTGTTTGTGGATAAGTTTGATACCTTTGAAGCTTCTTTTTAAGCTTGCTGGGGCAAGTCTAGAAAGCCTTCACTC-TCAGGTGGATgttttcagactttatggttttagaacc-ttaacactct-------------------------ttaaaattcctgagg--------actccatagtttttgtttatgaggattttaactatggact-attcaccattttaggaatta-----aa----------actaggaacattttATaacacaagactacagaagcacaacccgcataatgtcagtgta---atgata---------tgatacaacatgtagcctctataaataccactgtataattgtgaatgaattaaagtgaaaaaaaggcaaattaaatcctagt----attat--ttaaacttgttttaaccttacaggcccactggggttccctagaccacactttggtagctgcGGTCC--TAGCATTAGTTTAACCCTATACTTAAGACTTGGCCTTTCTGGGATCTCTACTGAATTCTACCC-------------------CCTGTTCACCATTGTCTTT i rheMac3.chr3 C 0 C 0 s macFas5.chr3 7363068 514 - 192294377 TTGTTGTAGGAGGCGATTGTTTGTGGATAAGTTTGATACCTTTGAAGCTTCTTTTTAAGCTTGCTGGGGCAAGTCTAGAAAGCCTTCACTC-TCAGGTGGATgttttcagactttatggttttagaacc-ttaacactct-------------------------ttaaaattcctgagg--------actccatagtttttgtttatgaggattttaactatggact-attcaccattttaggaatta-----aa----------actaggaacattttATaacacaagactacagaagcacaacctgcataatgtcagtgta---atgata---------tgatacaacatgtagcctctataaataccactgtataattgtgaatgaattaaagtgaaaaaaaggcaaattaaatcctagt----attat--ttaaacttgttttaaccttacaggcccactggggttccctagaccacactttggtagctgcGGTCC--TAGCATTAGTTTAACCCTATACTTAAGACTTGGCCTTTCTGGGATCTCTACTGAATTCTACCC-------------------CCTGTTCACCATTGTCTTT i macFas5.chr3 C 0 C 0 s papAnu2.chr3 6927677 515 - 180432695 TTGTTGTAGGAGGCAATTGTTTGTGGATAAGTTTGATACCTTTGAAGCTTCTTTTTAAGCTTGCTGGGGCAAGTCTAGAAAGCCTTCACTC-TCAGGTGGATGTTTTCAGACTTTATGGTTTTAGAATC-TTAACACTCT-------------------------TTAAAATTCCTGAGG--------ACTCCATAGTTTTTGTTTATGAGGATTTTAACTATGGACTAATTCACCATTTTAGGAATTA-----AA----------ACTAGGAACATTTTATAACACAAGACTACAGAAGCACAACCTGCATAATGTCAATGTA---ATGATA---------TGATACAACATGTAGCCTCTATAAATACCACTGTATAATTGTGAAtgaattaaagtgaaaaaaaggcaaattaaatcCTAGT----ATTAT--TTAAACTTGTTTTAACCTTACAGGCCCACTGGGGTTCCCTAGACCACACTTTGGTAGCTGCGGTCC--TAGCATTAGTTTAACCCTATACTTAAGACTTGGCCTTTCTGGGATCTCTACTGAATTCTACCC-------------------CCTGTTCACCATTGTCTTT i papAnu2.chr3 C 0 C 0 s chlSab2.chr21 6827259 513 - 127223203 TTGTTGTAGGAGGCAATTGTTTGTGGATAAGTTTGATACTTTTGAAGCTTCTTTTTAAGCTTGCTGGGGCAAGTCTGGAAAGCCTTCACTC-TCAGGTGGATAttttcagactttatggttttagaacc-ttaacactct-------------------------ttaaaattcctgagg--------gccccatagtttttgtttatgaggattttaactatggact-attcaccattttaagaatta-----aa----------actagaaacattttataacacaggactacagaagcacaacctgcataatgtcaatgta---atgata---------tgatataacgtgtagcctctataaataccactgtataattgtgaatgaattaaagtg-aaaaaaggcaaattaaatcctagt----attat--ttaaacttgttttaaccttacaggcccactggggttccctagactacactttggtagctgcGGTCC--TAGCATTAGTTTAACCCTATACTTAAGACTTGGCCTTTCTGGGATCTCTACTGAATTCTACCC-------------------CCTGTTCACCATTGTCTTT i chlSab2.chr21 C 0 C 0 s calJac3.chr8 94490959 506 + 128169293 TTGTTGTGGTAGGCAATTATTTGTGGATAAGTTTGATACCTTTGAAGCTTCTTTTTAAGCTTGCTCGGAC---------AATCCTTCACTCTTAAGGTAGATgttttcaaactttatggttgtagaacc-ttaacactct-------------------------ttaaaattactgagg--------accctatagtttttgtttatgaggattgtaactatggact-attcagcattttagaaatta-----aa----------actaggaacattttagaacacaagactacagaagcacaacttgtgcagtgtcaatgtaatgatgtta---------tgagacaacatgtagcctctgtaaagaacactgtataattgtgaatgaattgaaatg--aaaaaagcgaattaaatcctggt----attac--ttaaacttgttttgaccttacaggcccaatggggttcccttgaccacactttgGTAGCTGTGATCC--TAGCATTAGTTTAACCCAGTACTTAAGACTTGGCA-TTCTGGGATCTCTACTGAATTCTGCTC-------------------TCTGTTCATCATTGTCTTT i calJac3.chr8 C 0 I 11 s canFam3.chr16 43591151 557 - 59632846 tttttgtggcaggcagtta-ctgtagaca--ttcgaattgtttgaagcttctc--taggctttctggggtggATCTAGAGAACCTTCACTT-GGCAGTagctattctcagacttttgggtcttagaactgttaacactctaaaattctttttttttttttaaacactaaaattcttaagg--------accctgtagagctt-----tgaggaggataattattgaat-atttaccatcttagaaattactgagaatatttttTTCActgagaatattttaaaacataaa--tacacaagcatatttattgtgatgtca-tgca---atgatgttttatattttatatatcatgtagcctctgcaaa-------atagcactgtgattggattaaagt--aaaaaaggcaaataacatcttagttatcatcattatgaaaatagttttgaccttatagacccactagggtttcCTAGATCACACTGTAGTAACTGCTTTTCTATAGCATGAGTTTAAT------------ATGTGACCTTTATGACATCTCTCCCATATCCTTCCCTGCCATGAGTTCCCCATGACCTCCTTGCCAGTGTCTTT i canFam3.chr16 I 786 C 0 a score=1815715.000000 s hg38.chr1_KI270765v1_alt 182654 703 + 185285 GTACTCTGACTGGTTGTGCTTCACTTGTCTTTGAGCCTTTTGCAAGCTCTGGTAATTGTGCAGTTTACACATTCCCAGTAGATGTACTTTCCCCTGGTTGTGGGTC----TTTGGGCTTCTAGAAgtacggcttggtgttccaccaaagacttcagggg-atcctttgtagatttctggagctcttagtccttattgcttcttcattttgagtactgtgtcctgcaaatt-ccactgcctcgcctcccctaacctc---------------agcgaggccattgattgtactctgctgaggttctccctccctgggcagcattctggaaaatgtttctaggcagaatatcataggact--ccctgagtgtttccttcctctcagagaccactgtctcctttacta-tgtgttgtccaatatctgaaaacagttgtttcatacactttgtccaattttctactatctta---tgggaaaacaggctggtcccatatactccattatcgttgaagcatgtatccgtattagattat--aaAACATATCTGTAACAACTTTGGACATGGTACCATGGATGGAATCCTGGATGACATCTTATTTGAAAAAACTTTTAAAACT-AAGGCTAAACTGGTTCAATggaagaaaaaaa-----tgatagtacaaccccagtacctaagttaaaa---ggaaatttcaaag-acagagaaattgttgaagtgttgaagtac----tagaagtcaa s panTro4.chr2A 22217550 702 - 113622374 GTACTCTGACTGGTTGTGCTTCACTTGTCTTTGAGCCTTTTGCAAGCTCTGGTAATTGTGCAGCTTACAAATTCCCAGTAGATGTACTTTCCCCTGGTTGTGGGTC----TTTGGGCTTCTAGAAGTACGGCTTGGTGTTCCACCAAAGACTTCAgggg-atcctttgtagatttctggagctcttagtccttattgcttcttcattttgagtactgtgtcctgcaaatt-ccactgcctcgccttccctaacctc---------------agcgaggccattgattgtactctgctgaggttctccctccctgggcagcgttctggaaaatgtttctaggcagaatatcataggact--ccctgagtgtttccttcctctcagagaccactgtctcctttacta-tgtgttgtccaatatctgaaaacagttgtttcatacactttgtccaattttctactatctta---tgggagaacaggctggtcccatatactccattatcgttgaagcatgtatccgtattagattat--aaAACATATCTGTAACAACTTTGGACA-GGTACCATGGATGGAATCCTGGATGACATCTTATTTGAAAAAACTTTTAAAACT-AAGGCTAAACTGGTTCAACggaagaaaaaaa-----tgatagtacaaccccagtacctaagttaaaa---ggaaatttcaaag-acagagaaattgttgaagtgttgaagtac----tagaagtcaa i panTro4.chr2A C 0 C 0 s ponAbe2.chr7 7589401 703 - 157549271 GTACTCTGACTGGTTGTGCTTCACTTGTCTTTGAGACTTTTGCAAGCTCTGGTAATTGTGCAGCTTACAAATTCCCAGTAGATGTACTTTCCCCTGGTTGTGGGTC----TTTGGGCTTCTAGAAGTACGTCTTGGTGTTCCACCAAAGACTTCAGGGG-ATCCTTTGTAGATTTCTGGAGCTCTTAGTCCTTATTGCTTCTTCATTTTGAGTACTGTGTCCCGCAAATT-CCACTGCCTCGCCTTCcctaacctc---------------agcgaggccatcgattgtactctgctgaggttctccttccctgggcagcgttctggaaaatgtttctaggcagaatatcataggact--ccctgagtgtttccttcctctcagataccactgtctcctgtacta-tgtgttgtccaatatctgaaaacagttgtttcatatactttgtccaattttctactatctta---tgggagaacaggctggtcccacctactccattatagttgaagcgtgtatccgtattagattat--aaAACATATCTGTAACAACTTTGGACATGGTGCCATGGATGGAATCCTGGATGACATCTTATTTGAAAAAACTTTTAAAACT-AAGGCTAAACTGGTTCAACAgaagaaaaaaa-----tgatagtacaaccccagtacctaggttaaaa---ggaaatttcaaag-agggagaaattgttcaagtgttgaagtac----tagaagtcaa i ponAbe2.chr7 C 0 C 0 s nomLeu3.chr13 7289591 704 - 110113093 GTACTCTGACTGGTTGTGCTTCACTTGTCTTTGAGCCTTTTGCAAGCTCTGGTAATTGTGCAGCTTACAAATTCCCAGTAGATGTACTTTCCGCTGGTTGTGGGTC----TTTGGCCTTATAGAAGCATGGCTTGGTGTTCCACCAAAGACTTAAGGGGAATCCTTTGTAGATTTCTGGAGCTCTTAGTCCTTATTGCTTCTTCATTTTGAGTACTGTGTCCTGCAAATT-CCACTGCCTCACCTTCcctaacctc---------------agcgaggccattgattttactctgctgaggttctccctctctgggcagcgttctggaaaatgtttctaggcagaatatcataggact--cactgagtgtttccttcctctcagagaccactgtctcctgtactg-tgtgttgtctaatatctgaaaacagttgtttcatacactttgtccaattttctagtatctta---tgggagaacaggctggtcccacctactccattatagttgaagcgtgtatccgtattagattat--aaAACATATCTGTAACAACTTTGGACATGGTACCATGGATGGAATCCTGGATGACATCTTATTTGAAAAAACTTTTAAAACT-AAGGCTAAACTGGTTCAAaggaagaaaaaaa-----tgatagtacaaccccagtacttaggttaaaa---ggaaatttcaaag-agggagaaattgttcaagtgttgaagtac----tagaagtcaa i nomLeu3.chr13 C 0 C 0 s rheMac3.chr3 7197974 707 - 198365852 GTACTCTGACTGGTTGGGCTTCACTTGTCTTTGAGCCTTTTGCAAGCTC-GGTAACTGTGCAGCTTACAAATTCCCAGTAGGTGTACTTTCCCCTGGTTGGGGGTC----TTTGGCCTTATAGCAgtgcagcttggtgttctgccaaagacttcaggggaatcctt--tagatttctggagctcttagtcctta-tgcttcttcattttgagtactgtgtcctgcacatt-ccactgcctcaccttccctaacccc---------------agggaggccatggattgttctctgatgaggttctccttccctgggcagcggtctggaaactgtttctaggtggagtatcacaggacc--ccctgagtgtttccttcctctcagagaccactgtctcctgtgtta-tgtgttgtccaatatctgaaaacaagtgtttcatacattttgtccaattttctagtatctta---tgggagaacaggctggtcccacctactccattatagttgaagcatgtatccgtattagattATCCGTATCAGATCTGTAACAATTTTGGACAGGGTACCATGAATGGAATCCTGGATGACATCTTATTTGAAAAAATTTTTAAAACT-AAGCCTAAACTGGTTCAGCAGAAGAAAAAAATGACTTGATAGTACAACcccagtacctaggttaaaa---ggaaatttcacag-agggagaaattgttcaagtgttgaagtac----tggcaatcaa i rheMac3.chr3 C 0 C 0 s macFas5.chr3 7363582 705 - 192294377 GTACTCTGACTGGTTGGGCTTCACTTGTCTTTGAGCCTTTTGCAAGCTC-GGTAACTGTGCAGCTTACAAATTCCCAGtaggtgtactttcccgtggttgggggtc----tttggccttatagcagtgcagcttggtgttctgccaaagacttcaggggaatcctt--tagatttctggagctcttagtcctta-tgcttcttcattttgagtactgtgtcctgcacatt-ccactgcctcaccttccctaacccc---------------agggaggccatggattgttctctgatgaggttctccttccctgggcagcggtctggaaactgtttctaggtggagaatcacaggacc--ccctgagtgtttccttcctctcagagaccactgtctcctgtgtta-tgtgttgtccaatatctgaaaacaagtgtttcatacattttgtccaattttctagtatctta---cgggagaacaggctggtcccacctactccattatagttgaagcatgtatccgtattagattat--aaAACAGATCTGTAACAATTTTGGACAGGGTACCATGAATGGAATCCTGGATGACATCTTATTTGAAAAAATTTTTAAAACT-AAGCCTAAACTGGTTCAGCAGAAGAAAAAAATGACTTGATAGTACAACCCCAGTACCTAGGTTAAAA---GGAAATTTCACAG-AGGGAGAAATTGTTCAAGTGTTGAAGTAC----TAGCAATCAA i macFas5.chr3 C 0 C 0 s papAnu2.chr3 6928192 705 - 180432695 GTACTCTGACTGGTTGGGCTTCACTTGTCTTTGAGCCTTTTGCAAGCTC-GGTAACTGTGCAGCTTACAAATTCCCAGTAGGTGTACTTTCCCCTGGTTGGGGGTC----TTTGGCCTTATAGCAGTGCAGCTTGGTGTTCTGCCAAAGACTTCAGGGGAATCCTT--TAGATTTCTGGAGCTCTTAGTCCTTG-TGCTTCTTCATTTTGAGTACTGTGTCCTGCACATT-CCACTGCCTCACCTTCCCTAACCCC---------------AGGGAGGCCATGGATTGTTCTCTGATGAGGTTCTCCTTCCCTGGGCAGCGGTCTGGAAACTGTTTCTAGGTGGAGTATCACAGGACC--CCCTGAGTGTTTCCTTCCTCTCAGAGACCACTGTCTCCTGTACTC-TGTGTTGTCCAATATCTGAAAACAattgtttcatacattttgtcCAATTTTCTAGTATCTTA---TGGGAGAACAGGCTGGTCCCACCTACTCCATTATAGTTGAAGCATGTATCCGTATTAGATTAT--AAAACATATCTGTAACAATTTTGGACAGGGTACCATGAATGGAATCCTGGATGACATCTTAtttgaaaaaacttttaaaact-aagcCTAAACTGgttcagcagaagaaaaaaatgacttgatAGTACAACCCCAGTACCTAGGTTAAAA---GGAAATTTCACAG-AGGGAGAAATTGTTCAAGTGTTGAAGTAC----TAGCAATCAA i papAnu2.chr3 C 0 C 0 s chlSab2.chr21 6827772 705 - 127223203 GTACTCTGACTGGTTGGGCTTCACTTGTCTTTGAGCCTTTTGCAAGCTC-GGTAACTGTGCAGCTTACAAATTCCCAGTAGGTGTACTTTCCCCTGGTTGGGGGTC----TTTGGCCTTATAGAAgtgcagcttggtgttctgccaaagacttcaggggaatcctt--tagatttctggagctcttagtcctta-tgcttcttcattttgagtactgtgtcctgtacatt-ccacggcctcaccttccctaacctc---------------agggaggccatggattgttctctgatgaggttctccttccctgggcagcagtctggaaaatgtttctaggtagagtatcacaggact--ccctgagtgtttccttcctctcagagatcactgtctcctgtacta-tgcgttgtccaatatctgaaaacaattgtttcatacattttgtccaattttctagtatctta---tgggagaacaggctggtcccacctactccattatagttgaagcatgtatccgtattagattat--aaAGCATATCTGTAACAATTTTGGACAGGATACCATGAATGGAATCCTGGATGACATCTTATTTGAAAAAACTTTTAAAACT-AAGCCTAAACTGGTTCAGCAGAAGAAAAAAATGGCTTGATAGTACAACCCCAGTACCTAGGTTAAAA---GGAAATTTCACAG-AGGGAGAAATTGTTCAAGTGTTGAAGTAC----TAGCAATCAA i chlSab2.chr21 C 0 C 0 s canFam3.chr16 43591708 709 - 59632846 TTACT----CTGGTTGAGATTCAGATGTCTTC-AGCATTGTGTGAGCTGTTGGAATTGTTCAACTTATAAATTCTCAATAGCTCTTCTTTGTCCTGCTTGTGTGTCCTTGTTTGAcctcctatgtatgcagctcgatgtttagccaaagacttgagggaaattatgtgtagatttctggagctcttgctctttatatctccttcctttccaagactttgctctgctagttacaactgcctcagcctcccagaactctatcatgtgtcttaaactcagacc----attgtaccctgctggtgttctccttcttt-ggcagcattctggaaactgtctat-tgcaaaatatcataggattcacctcacttgtttctctcttctcagaaaccacag--ccctgtcctgcctttttgttcagtatctg-aaacaagtgtttcatatattttgccccattttctagtattttatgttgagagaaaggtctcatcccaggtacttcatcattgttgaaacagatattc-----------t------cAAATCTAT--CAACTTTAGACATGGTGCCATGAATGAAACCCTGGATCATTCCTTTCTTGAAACAGCTTTTGAAACTAAAAACTAAGCCAGTTCAGTAGAAAGAAAGAG----TTGATATTAGAGCTCCACAAACTCTACTGGGAGCTGGGGATCTTTCAGTGGGGAAAGGTTGTCCAGACATGGCAGTGCTGCATGGAGCTCAG i canFam3.chr16 C 0 C 0 e calJac3.chr8 94491465 11 + 128169293 I a score=897460.000000 s hg38.chr1_KI270765v1_alt 183357 308 + 185285 --gaaacacaaacactaatgtttccattagatttgagaataagaaggtcttgacaagcctggcttaagcagtt---atgagtgga---tgtgggtgtag-agaccagactgtagtgttttgaagagtgaatataagcggagaaactt-gagaGTTTGGTTGTAAAAGGGACCAC-----AGGTATCTGTGAA----GAAAACTTAGTAGGAATGAAGATAAATATTTTAAAAATTCTGCCACTAAACACCTCAGATCTGTCTGCCACTTTGTCTTCAGGTCA--TTG----TTTAAGCCAgggtcagg----------cagactggc-----------ccatagactaaatctg s panTro4.chr2A 22218252 308 - 113622374 --gaaacacaaacactaatgtttccattagatttgagaataagaaggtcttgacaagcctggcttaagcagtt---atgagtgga---tgtgggtgtag-agaccagactgtagtgttttgaagagtgaatataagcggagaaactt-gagaGTTTGGTTGTAAAAGGGACCAC-----AGGTATCTGTGAA----GAAAACTTAGTGGGAATGAAGAGAAATATTTTAAAAATTCTGCCACTAAACACCTTAGATCTGTCTGCCACTTTGTCTTCAGGTCA--TTG----TTTAAGCCAgggtcagg----------cagactggc-----------ccatagactaaatctg i panTro4.chr2A C 0 C 0 s ponAbe2.chr7 7590104 291 - 157549271 --gaaacacaaacactaatgtttccattagatttgagaataagaa-gtcttgac-agcctggctt-agcag-t---atgagtggggatggtgggtgtag-aga-cagactgtagtgTTT---------------NNNNNNNNNNCTT-GAGAGTTTGGTTGTAAAAGGGACCAC-----AGGTATCTGTGAA----GAAAACTGAGTAGGAATGAAGATAAATATTTTAAAAATTCTGCCACTAAACACCTCAGATCTGTCTGCCACTTTATCTTCAGGTCA--TTG----TTTAAGCCAgggtcagg----------cagactggc-----------ccatagactaaatctg i ponAbe2.chr7 C 0 C 0 s nomLeu3.chr13 7290295 308 - 110113093 --gaaacacaaacactaatgtttccattagatttgagaataagacagtcttgacaagcctggcttaagcagtt---atgagtgta---cgtgggtgtag-agaccagactgtagtgttttgaagagtgaatataagctgagaaactt-gagaGTTTGGTTGTAAAAGGGACCAC-----AGGTATCTGTGAA----GAAAACTTAGTAGGAATGAAGATAAATATTTTAAAAATTCTGCCACTAAACACCTCAGGTCTGTCTGCCACTTTATCTTCAGGTCA--TTG----TTTAAGCCAgggtcagg----------cagactggc-----------ccatagaccaaatctg i nomLeu3.chr13 C 0 C 0 s rheMac3.chr3 7198681 309 - 198365852 --gaaacacaaacgctaatgtttccattagatttgagaataagaaggtcttggcgagcctggcttaagcagtt---ttgagtgga---tgtgggcgcag-agaccgtagtgtagtatgttgaagagtgaatataaactgagaaagttggagaGTTTGGTTGTAAAAGGGGCCAC-----AGGTATCTGTGAA----GAAAACTTAGGAGGAATGaaaataaatattttaaaaattCTGCCACTAAACACCTCAGATCTGTCTGCCACTTTATCTTCAGATCA--TCA----TCGAAGCcagggttagg----------cagactggc-----------ccatagactaaatctg i rheMac3.chr3 C 0 C 0 s macFas5.chr3 7364287 308 - 192294377 --GAAACACAAACGCTAATGTTTCCATTAGATTTGAGAATAAGAAGGTC-TGACGAGCCTGGCTTAAGCAGTT---TTGAGTGGA---TGTGGGCGTAG-AGACCATAGTGTAGTATGTTGAAGAGTGAATATAAACTGAGAAAGTTGGAGAGTTTGGTTGTAAAAGGGGCCAC-----AGGTATCTGTGAA----GAAAACTTAGGAGGAATGAAAATAAATATTTTAAAAATTCTGCCACTAAACACCTCAGATCTGTCTGCCACTTTATCTTCAGATCA--TCA----TTGAAGCcagggttagg----------cagactggc-----------ccatagactaaatctg i macFas5.chr3 C 0 C 0 s papAnu2.chr3 6928897 309 - 180432695 --GAAACACAAACACTAATGTTTCCGTTAGATTTGAGAATAAGAAGGTCTTGACAAGCCTGGCTTAAGCAGTT---TTGAGTGGA---TGTGGGCGTAG-AGACCATAGTGGAGTATGTTGAAGAGTGAATATAAACTGAGAAAGTTGGAGAGTTTGGTTGTAAAAGGGGCCAC-----AGGTATCTGTGAA----GAAAACTTAggaggaatgaaaataaatattttaaaaattctgccaCTAAACACCTCAGATCTGTCTGCCACTTTATCTTCAGATCA--TCA----TTGAAGCCAGGGTTAGG----------CAGACTGGC-----------CCATAGACTAAATCTG i papAnu2.chr3 C 0 C 0 s chlSab2.chr21 6828477 309 - 127223203 --GAAACACAAACACTAATGTTTCCGTTAGATTTGAGAATAAGAATGTCTTGACAAGCCTGGCTTAAGCAGTT---TTGAGTGGA---TGTGGGCGTAG-AAACCATAGTGTAGTATGTTGAAGAGTGAATATAAACTGAGAAAGTTGGAGAGTTTGGTTGTAAAAGGGGCCAC-----AGGTATCTGTGAA----GAAAACTTAGGAGGAATGAAAATAAATATTTTAAAAATTCTGCCACTAAACACCTCAGATCTGTCTGCCACTTTATCTTCAGATCA--TCA----TTGAAGCcagggttagg----------cagactggc-----------ccgtagactaaatctg i chlSab2.chr21 C 0 C 0 s calJac3.chr8 94491476 309 + 128169293 --GAGATGCAAACACTAACGTTTccattagatttgggtataagaaggtcttgataagcctggcttaagcag-t---ttgagtgca---tgcgggcatag-agaccatagtgtagtatgttgaagagtgaatataaactgagaacctt-gagaGTTCGGTTGTAAAAGGGACGAC-----ATGTATCTGTGAA----GAAAACTTAGTAGGAATGAAGATAAATATTTTTAAAATTCTGCCACTAAATACCTCAGATCTGTCTGCCACTTTTTCTGCAGGTCATTTTT----TTTAAGCCAGAGTGAAg----------cagactggc-----------ccatagactaaatctg i calJac3.chr8 I 11 C 0 s canFam3.chr16 43592417 315 - 59632846 AGAACACATGAACACAGCAGC-----CCAGGGTCGGGAGGGAGGAGGTGTGGACCAA-TTGTCTGGAGCTGCTTACTTGAATGGT---GGTGGGCATAGTTAACCAGGTTGAGGTGTGCTGGAGAATGAATAT-TGCTGAGTGACTT-GGGAATTTGGCTGTAAA--GGGCCACAGAGTAGGTGTCTGTGAAATAGGAAAACTTA---GGAAAGAAGATACAT---------------------TACAGCTTGGATGTATCTCCCACTTTATCTTCATCTTA--CTGCCTCTCCAAGCCAGAGACAGGTCAGTCACATCACACAGGCCAAATCTGTTTCTATAAATGAAATTTG i canFam3.chr16 C 0 I 174 a score=1247478.000000 s hg38.chr1_KI270765v1_alt 183665 391 + 185285 gcccatttcctgtg---------------tttgcaaataaacttttattgaaatatggccaagttcttttgtttacatatatttgtagcggtttttgcattacactggcagagtttttataaagttgcaacagatcatatggccctcaaaactttctgtttactctctggccctttat-------------------tggaaatgtttgctggctactgCTCTAAGCCACCCTGATCTTACCCC-AGGCCATTTCCTTCATTTGGGCAAATAATATAC--TAACTTGGTAATCTAAGACAAATTCTTAAAAATCA-ATAAGCTAatcaaaataataaata-tacatgtttaaaaatcaaatgacattaaaagcctcgtaatgggccaggtgtggtgcctcacacctgtcatcccagcactttgggaggcc s panTro4.chr2A 22218560 391 - 113622374 gcccatttcctgtg---------------tttgcaaataaacttttattgaaatatggccaagttcttttgtttacatatatttgtagcggtttttgcattacactggcagagtttttataaagttgcaacagatcatatggccctcaaaactttctgtttactctctggccctttat-------------------tggaaatgtttgctggctactgCTCTAAGCCACCCTGATCTTACCCC-AGGCCATTTCCTTCATTTGGGCAAATAATATAC--TAACTTGGTAATCTAAGACAAATTCTTAAAAATCA-ATAAGCTAatcaaaataataaata-tacatgtttaaaaatcaaatgacattaaaagcctcataatgggccaggtgtggtgcctcacacctgtcatcccagcactttgggaggcc i panTro4.chr2A C 0 C 0 s ponAbe2.chr7 7590395 392 - 157549271 gcccatttcctgtg---------------tttgcaaataaacttttattgaaatatggccatgttcttttgtttacatacatttgtagcggtttttgtattacactggcagagtttttataaagttgcaacagatcatatggccctcaaaactttctatttactctctggccctttat-------------------tggaaatgtttgctggctactgTTCTAAGCCACCCTGATCTTACCCCTAGGCCATTTCTTTCATTTGGGCAAATAATATAT--TAACTTGGTAATCTAAGACAAATTCTTAAAAATCA-GTAAGCTAatcaaaataataaata-tacatgtttaaaaatcaaatgacattaaaagccttgtaatgggctgggtgtggtgcctcacacccgtaatcccagcactttgggaggcc i ponAbe2.chr7 C 0 C 0 s nomLeu3.chr13 7290603 392 - 110113093 gcccatttcctgtg---------------tttgcaaataaacttttattgaaatatggccatgttcttttgtttacaaatatttgtagcagtttttgcattacactggcagagtttttataaagttgcaacagatcatatggccctcaaaactttccatttactctctggccctttat-------------------tggaaatgtttgctggctactgCTCTAAGCCACCCTGATCTTACCCCTAGGCCATTTCCTTCATTTGGGCAAATAATACAT--TAACTTGGTAATCTAAGACAAATTCTTAAAAATCA-GTAAGCTAatcaaaataataaata-tacatgtttaaaaatcaaatgacattaaaagccttgtaatgggccaggtgtggtgcctcacacctgtaatcccagcactttgggaggcc i nomLeu3.chr13 C 0 C 0 s rheMac3.chr3 7198990 393 - 198365852 acccatttcctttg---------------tttgcaaataaacttttattgaaatatggccatgttcttttgtttacatatatttgtagtgggttttgctttacactggcagggtttttataaagttgcaacaggtcatacggccctcagaactttctatttactctctggccctttat-------------------tggaaatgtttgctggctactgCTCTAAGCCACCCTGATCTTACTCCTAGGCCATTTCCTTCATGTGGGCAAATAATATAT--TAACTTGGTAATCTAAGACAAATTCTTAAAAATCATATAAGCTAATCAAATTAATAAATA-TACATGTTTAAAAACCAAATGACATGAAAAGCTTTGTAATGggccgggcgtgttgcctcacacctgtaatcccagcactttgggaggcc i rheMac3.chr3 C 0 N 0 s macFas5.chr3 7364595 393 - 192294377 acccatttcctttg---------------tttgcaaataaacttttattgaaatatggccatgttcttttgtttacatatatttgtagtgggttttgccttacactggcagggtttttataaagttgcaacaggccatatggccctcagaactttctatttactctctggccctttat-------------------tggaaatgtttgctggctactgCTCTAAGCCACCCTGATCTTACTCCTAGGCCATTTCCTTCATGTGGGCAAATAATATAT--TAACTTGGTAATCTAAGACAAATTCTTAAAAATCATATAAGCTAatcaaattaataaata-tacatgtttaaaattcaaatgacatgaaaagctttgtaatgggccgggcgtgttgcctcacacctgtaatcccagcactttgggaggcc i macFas5.chr3 C 0 C 0 s papAnu2.chr3 6929206 392 - 180432695 ACCCATTTCCTTTG---------------TTtgcaaataaacttttattgaaatATGGCCATGTTCTtttgtttacatatatttgtaGTGGGTTTTGCCTTACACTGGCAGGGTTTTTATAAAGTTGCAACAGGTCATATGGCCCTCAGAACTTTCtgtttactctctggccctttat-------------------tGGAAATGTTTGCTGGCTACTGCTCTAAGCCACTCTGATCTTACTCCTAGGCCATTTCCTTCATGTGGGCAAATAATATAT--TAACTTGGTAATCTAAGacaaattcttaaaaatca-ataagctaatcaaattaataaata-tacatgtttaaaaatcaaatgacatGAAAAGCTTTGTAATGGGCCGGGCGTgttgcctcacacctgtaatcccagcactttgggaggcc i papAnu2.chr3 C 0 C 0 s chlSab2.chr21 6828786 392 - 127223203 acccatttcctgtg---------------tttgcaaataaacttctattgcaatatggccatgttcttttgtttacatatatttgtagtgggttttgccttacactggcagggtttttataaagttgcaacagatcatatggccctcagaactttctatttactctctggccctttat-------------------tggaaatgtttgctggctactgCTCTAAGCCACCCTGATCTTACTCCTAGGCCATTTCCTTCATTTGGGCAAATAATATAT--TAACTTGATAATCTAAGACAAATTCTTAAAAATCA-ATAAGCTAatcaaactaataaata-tacatgtttaaaaatcaaatgacatgaaaagctttgtaatgggccgggcgtgttgcctcacacctgtaatcccagcactttgggaggcc i chlSab2.chr21 C 0 C 0 s calJac3.chr8 94491785 387 + 128169293 gcccctttcctatg---------------tttgcaaataaactgttatttgaatatggcca--tttttttgtttgcatatacctgtagtgggttttgcattacattgacagaa---ttgtgaagttgcagcagatcatatggccctccaaactttctatttactctctgaccctatat-------------------tggaaatgtttgctggctactgCTCTAAGCCACCCTGATCTTACCCCTAGGCCATTTCTTTCATTTGGGCAAATAATATAT--TAACTTGGTAATCTAAGATAAATTTTTAAAAATCA-ATAAGCTAATCAAAATAATAAATA-TATGTGTTTACAAATCAAACGACATTAAGAGCTTTGTAATAggctgggtgcagtgcctcacacctataatctcagcgctttgggaggcc i calJac3.chr8 C 0 C 0 s canFam3.chr16 43592906 357 - 59632846 gccaaaccgctgcgccacccagggatccctctataaatgaaatttgattgaaacacaactgtattcttttgtttacatatgtc-gttgtgtggtttatactgtaatggcacag---ttgtgtagtt--cacaaaccatatg--CCTCACAAAGTTCAGAGTATTTACTGACTCTTTATACaaaaaaaaaaaaacaaaaaaaaaaGTTGGCTGGTTACTCCTCTAAGCCACTCTGCTC---CTCCTA----------TCCATTTAGGTCAATAATATATGATAACTTGATAATCTGTGACTAATTTAAAAGAATCA-----GTTAatcagagtaataaatgttacatacttacaagttaaatagctttaaaagccttaggatga----------------------------------------------- i canFam3.chr16 I 174 C 0 a score=302524.000000 s hg38.chr1_KI270765v1_alt 184056 139 + 185285 gaggtgggtggatcacttgagggcaggagttcaagccagcctggccaacacagtaaaaccccatctctactaaaaatacaaaaattagccgagtgtggtggctcattcctctagtcctagctactcaggaggctgagcc s panTro4.chr2A 22218951 139 - 113622374 gaggcgggtggatcacttgagggcaggagttcaagccagcctggccaacacagtaaaaccccatctctactaaaaatacaaaaattagccaagtgtggtggctcattcctctagtcctagctactcaggaggctgagcc i panTro4.chr2A C 0 C 0 s ponAbe2.chr7 7590787 139 - 157549271 gaggcaggtggatcacttgagggcaggagttcaagccagcctggccaacacagtaaaaccccatctctactaaaaatacaaaaattagccgggtgtgttggctcattcctgtagtcctagctactcaggaggctgggcc i ponAbe2.chr7 C 0 C 0 s nomLeu3.chr13 7290995 139 - 110113093 gaggcaggtggatcacttgagggcaggagttcaagccagcctggccaacacagtaaaacctcatttctactaaaaatacaaaaattagctgggtgtggtggctcattcctgtagtcctagctactcaggaggctgagcc i nomLeu3.chr13 C 0 C 0 s macFas5.chr3 7364988 139 - 192294377 gaggcaggtggatcacttgaggtcaggagttcgagccagcctggccaacatagtaaaactctgtctctactaaaaatacaaaaattagctgggtgtggtggctcattcctgtagtcccagctactcaggaggctgagcc i macFas5.chr3 C 0 C 0 s papAnu2.chr3 6929598 137 - 180432695 gaggcaggtggatcacttgaggtcaggagttcgagccagcctggccaacatagtaaaa--ctgtctctactaaaaatacaaaaattagctgggtgtggtggcttattcctgtagtcccagctactcaggaggctgagcc i papAnu2.chr3 C 0 C 0 s chlSab2.chr21 6829178 139 - 127223203 gaggcaggtggatcacttgaggtcaggagttcgagccagcctggccaacatggtaaaactctgtctctactaaaaatacaaaaactagctgggtgtggtggctcattcctgtagtcccagctactcaggaggctgagcc i chlSab2.chr21 C 0 C 0 s calJac3.chr8 94492172 139 + 128169293 aaggcaggtggatcacttgagggcaggagtttgagccagcctggccaacacagagaaaccccatctctactaaaaatacaaaatttagctggatgtggtagctcatgcctatagtcctagctgctcgggagtctaaggc i calJac3.chr8 C 0 C 0 s canFam3.chr16 43593263 42 - 59632846 ----------------------------------------ctggccagc---------ccctgtc-ctact--------------------------ctgcctcaacatttcagtcct--------------------- i canFam3.chr16 C 0 C 0 a score=171824.000000 s hg38.chr1_KI270765v1_alt 184195 116 + 185285 aggagaattatttgaacatgggagccggaggttgcagtgagctgagat--cacaccactgcactccagcccaggcaacagagcaagactccatctcaaaaaaaaaaaaaaaaaaaaaa s panTro4.chr2A 22219090 107 - 113622374 aggagaattatttgaacatgggagccggaggttgcagtgagctgagat--cacaccactgcactccagcccaggcaacagagcaagactccatctc---------aaaaaaaaaaaaa i panTro4.chr2A C 0 C 0 s ponAbe2.chr7 7590926 116 - 157549271 aggagaattatttgaacataggaggcggaggttgcggtgagctgaggt--cacaccactgcactccagcccaggcaacagagcaagactccatctcaaaacaaaaaaacaaaacaaaa i ponAbe2.chr7 C 0 I 10 s nomLeu3.chr13 7291134 116 - 110113093 aggagaattatttgaacatgggaggcggaggttgcagtgagctgagat--cacaccactgcactcccgcccaggcaacagagcaagactctatctcaaaaaaaaaaaaaaaaaaaaaa i nomLeu3.chr13 C 0 I 8 s macFas5.chr3 7365127 113 - 192294377 aggagaattatttgaacatgggaggcagaggttgcagtgagctgagat--cacaccactgcattccagcccaggcaacaaagcagga--ctgtctc-aaaaaaaaaaaaaaaaaaaaa i macFas5.chr3 C 0 C 0 s papAnu2.chr3 6929735 116 - 180432695 aggagaattatttgaacatgggaggcagaggttgcagtgagctgagat--cacaccactgcattccagcccaggcaacaaagcaagactctgtctcaaaaaaaaaaaaaaaaaaaaaa i papAnu2.chr3 C 0 C 0 s chlSab2.chr21 6829317 118 - 127223203 aggagaattatttgaacatgggaggcagaggttgcagtgagctgagatcacacaccactgcattccagcccaggcaacaaagcaagactctgtctcaaaaaaaaaaaaaaaaaaaaaa i chlSab2.chr21 C 0 C 0 s canFam3.chr16 43593305 10 - 59632846 --------------------------------------------------------------------tccaggcagc---------------------------------------- i canFam3.chr16 C 0 C 0 e calJac3.chr8 94492311 0 + 128169293 C a score=24309.000000 s hg38.chr1_KI270765v1_alt 184311 19 + 185285 ggccttgtaatgagcaacc s panTro4.chr2A 22219197 19 - 113622374 ggccttgtaatgaacaacc i panTro4.chr2A C 0 C 0 s nomLeu3.chr13 7291258 19 - 110113093 ggccttgtaatgaacaacc i nomLeu3.chr13 I 8 C 0 s macFas5.chr3 7365240 19 - 192294377 agccttgtaatgaacaacc i macFas5.chr3 C 0 C 0 s papAnu2.chr3 6929851 19 - 180432695 agccttgtaaTGAACAACC i papAnu2.chr3 C 0 C 0 s chlSab2.chr21 6829435 19 - 127223203 agccttgtcatgaacaacc i chlSab2.chr21 C 0 C 0 e calJac3.chr8 94492311 0 + 128169293 C e ponAbe2.chr7 7591042 10 - 157549271 I e canFam3.chr16 43593315 0 - 59632846 C a score=441729.000000 s hg38.chr1_KI270765v1_alt 184330 218 + 185285 aactcttgtcttactctacgtccacatctgagggaatcacttttaatcttttcaggtcttttttcttgtggttaatgctatagctctaaataatcaactggt-ttactgctttatcaatgctagattttgttgactttctgctgtgaataaataaattctgatttaggtcttaaaatacacctccttcc-----------------------ttctcccaatatagttgtattactatgttt s panTro4.chr2A 22219216 218 - 113622374 aactcttgtcttactctacctccacatctgagggaatcacttttaatcttttcaggtcttttttcttgtggttaatgctatagctctaaataatcaactggt-ttactgctttatcaatgctagattttgttgactttctgctatgaataaataaattctgatttaggtcttaaaatacacctccttcc-----------------------ttctcccaatatagttgtattactatgttt i panTro4.chr2A C 0 C 0 s ponAbe2.chr7 7591052 218 - 157549271 aactcttgtcttactctacctccatgtctgaggcaatcacttttaatcttttcaggtcttttttcttgtggttaatgctatagctctaaataatcaactgat-ttactgctttatcaatgctagattttgttgactttctgctatgaataaataaattctgatttaggtcttaaaatacacctccttcc-----------------------ttctcccaatatagttgtattactatggtt i ponAbe2.chr7 I 10 C 0 s nomLeu3.chr13 7291277 218 - 110113093 aagtcttgtcttactctacctccacatctgaggcaatcacttttaatcttttcaggtcttttttcttgtggttaatgctatagctctaaataatcaactggt-ttactgctttatcaatgctagattttgttgactttctgctatgaataaataaattctgatttaggtcttaaaatacacctccttcc-----------------------ttctcccaatatagttgtattactatgttt i nomLeu3.chr13 C 0 C 0 s macFas5.chr3 7365259 218 - 192294377 aacccttgtattactttacctccatgtctgaggcaatcacttttcatcttttcaggtcttttttcttgtagttagtgctatagctctaaatgataaactggt-ttactgctttatcagtgctagattttgtcgactttctgctatgaataaatcaattctgatttaggtcttaaaatacacctccttcc-----------------------ttctcccaatatagttgtattactatgttt i macFas5.chr3 C 0 C 0 s papAnu2.chr3 6929870 218 - 180432695 AACCCTTGTATTACTTTACCTCCATGTCTGAGGCAATCACTTTTCatcttttcaggtattttttcttGTAGTTAGTGCTATAGCTCTAAATGATAAACTGGT-TTACTGCTTTATCAGTGCTAGATTTTGTCGACTTTCTGCTATGAATAAATCAATTCTGATTTAGGTCTTAAAATacacctccttcc-----------------------ttctcccaatATAGTTGTATTACTATGTTT i papAnu2.chr3 C 0 C 0 s chlSab2.chr21 6829454 216 - 127223203 aacccttgtattactttacctccatgtctgaggcaatcagttttcatcttttcaggtcttttttcttgtagttagtgctatagctctaaat--taaactggt-ttactgctttatcagtgctagattttgtcgactttctgctatgaataaatcaattctgatttaggtcttaaaatacacctccttcc-----------------------gtctcccaatatagttgtattactatgttt i chlSab2.chr21 C 0 C 0 s canFam3.chr16 43593315 202 - 59632846 ----------------------cacgtctg---------------atccttgcaggtc---tttctagtagttaccttgatagttctaaataacaggctggtgttcctgctgtatctgtgttagatttcattgactttctgctaggaataaatatatgctgatttaggtcttcAAACATAcccccccccccccccccccccGTTCCAAAGCATCCTTCCAGTGTAGTTGTTCTACTATGTTT i canFam3.chr16 C 0 C 0 e calJac3.chr8 94492311 0 + 128169293 C a score=1854948.000000 s hg38.chr1_KI270765v1_alt 184548 735 + 185285 agttcaattaataa--ggtgttggttatgactcagtaaatgttcactgcagatctaaacagtatactatgagtttct-------------tttgtctttcatgGAGTTTTTAATAAC---AAGAAAGTAATA----GTGACTCTCCA----------TTCGTACTTTGTTTTTGCCTACTATAGA---ACTATCATATAAGATTATTTTTTAAAGTACTGTTTttttctgggagaagtcctaccctctttctagacattcccttctcctgctctgatatgtgccagtggcttctgggtgtgtt-----gtt-----ctcatccttaaacttccctggcctgatgtcctttgtcggatctgttgatttatagatcccaagtcttccttttctttgtaatacatcctcattctgttctgcatatctctaagtaactttattagaaggagaatgaaggagctgaattttgagtctt-cctgtgtctacaacgtattctgtcttcacacatagttgcttgtgtagctaggttgagaattgtactttgaaaagtattttcctgtagaattggaagattatactc--ttctagcatctggagttgggaagttttgtgccattctgatgggtgttcctttgaatttaactcttttattttcttctctggtagcttttaggctttctt----gtacctcatgatctgaatttttattctgtaccctcattacttgctgtttcattataatgtgggcacttgattggttctgtcTGAGGATCCTAGTCTTTTGAGA s panTro4.chr2A 22219434 734 - 113622374 agttcaattaataa--ggtgttggttatgactgagtaaatattcactgcagatctaaacagtatactatgagtttct-------------tttgtctttcatgGAGTTTTTAATAAC---AAGAAAGTAATA----GTGACTCTCCA----------TTCGTTCTTTGTTTTTGCCTACTATAGA---ACTATCATATAAGATTATTTTTTAAAGTACTGGTTttttctgggagaagtcctaccctctttctagacattcccttctcctgctctgatatgtgccagtggcttctgggtgtgtt-----gtt-----ctcatccttaaactt-cctggcctgatgtcctttgtcggatctgttgatttatagatcccaagtcttccttttctttgtaatacatcctcattctgttccacatatctctaagtaactttattagaaggagaatgaagcagctgaattttgagtctt-cctgtgtctacaacgtattctgtcttcacacatagttgcttgtgtagctaggttgagaattgtactttgaaaagtattttcctgtagaattggaaaattatactc--ttctagcatctggagttgggaagttttgtgccattctgatgggtgttcctttgaatttaactcttttattttcttctctggtagcttttaggctttcat----gtacctcatgatctgaatttttaTTCTGTACCCTCATTACTTGCTGTTTCATTATAATGTGGGCACTTGATTGGTTCTGTCTGAGGATCCTAGTCTTTTGAGA i panTro4.chr2A C 0 C 0 s ponAbe2.chr7 7591270 732 - 157549271 agttcaatt-ataa--ggtgttggttatgactcactaaatgttcactgcagctctaaacagtatactgtgagtttct-------------tttgtctttcatggagtttttaataac---aagaaagtaata----gtgactctcca----------ttcattctttgtttttgcctactataga---actatcatataagattattttttaaagtactgtttttttctgggagaagtcctaccctccttctagacattcccttctcctgctctgatatgtgccggtggcttctaggtgtgtt-----gtt-----ctcatccttaaacttccctggcctgatgtcctttgttggatctgttgatttatagatcccaagtcttccttttctttataatacatcctcattctgttccgcatatctctaagtaattttattaga---agaatgagagagctgaattttgagtcttccctgtgtctacaacgtattctgttttcacacatagttgcttgtgtagctaggttgagaattgtactttgaaaagtattttcctgtagaattggaaacttatactc--ttctagcatctggagttgggaagtttggtgccattctgatgggtgttcctttgaatttaactcttttattttcttctctggtagcttttaggctttcat----gtacctcatgatctgaatttttattctgtaccctcattacttgctgtttcattataatgtgggcacttgattggttctGTTTGAGGATCCTAGTCTTTTGAGA i ponAbe2.chr7 C 0 C 0 s nomLeu3.chr13 7291495 734 - 110113093 agttcaattaataa--ggtgttggttgtgactcagtaaatgttcactgcagatctaaacagtatactatgagtttct-------------tttgtctttcatgGAGTTTTTAATAAC---AAGAAAGTAATA----GTGACTCTCCA----------TTCGTTCTTTGTTTTTGCCTACTATAAA---ACTATCATATAAGATTATTTTTTAAAGTACCGTTTttttctgggaaaagtcctaccctccttctagacattcccttctcctgctctgatatgtgccagtggcttctaggtgtgtt-----gtt-----ttcatccttaaacttccctggcctgatgtcctttgttggctctgttgatttatagatcccaagtcctccttttctttataatacatcctcattctgttccgcatatctctaagtaactttattagaaggagaatgagggagctgaattttgagtctt-cctgtgtctacagcgtattctgtcttcacacatagttgcttgtgtagctaggttgagaattgtactttgaaaagtattttcctgtagaattggaaacttaaactc--ttctagcatctggagttgggaagtttggtgccattctgataggtgttcctttgaatttaactcttttattttcttctctggtagcttttaggctttcat----gtacctcatgatctgaatttttattctgtaccctcattacttgctgtttcattataatgtgggcacttgattggttttatctgaggatcctagtc-tttaaga i nomLeu3.chr13 C 0 C 0 s macFas5.chr3 7365477 719 - 192294377 agttcaattaataa--ggtgttgattttgactcagtgaatgttcactgcagatctaaatagtgtactatgagtttct-------------tttgtctttcatgGAGTTTTTAATAAC---AAGAAAGTAATA----GTGACTCTCCA----------TTTGTTCTTTGTTTTTGCCTACTATACA---ACTATCATATAAGATTATTTTTTAAAGTACCGTTTTTTTCTGGGAAGAGTCCTACCCTCctcctggacattcccttctcctgctctgaaacatgccagtagcttctaggtgtgtt-----gtt-----ctcatccttaaactttcctggcctgatgtcttttgttggatctgttgatttatagatcccaaatcttccttttcttt-------atcctcattctgttccacatatctctcagtaactttattagaaggagaatgagggagctgaattttgagtctt-cctgtgtctacaacgtattctgtcttcacacacagttgcttgtgtagctaggttgagaattgtactttgaaaagtgttttcttgtagaattggaaacttat-----------gcatctggatttgggaagtttggtgccattctgataggtgttcctctgaatttaactcttttgttttcttctctggtatcttttaggctttcat----gtacctcatgatctgaatttttaTTCTCCACCTTCATTACCTGCTGTGTCATTATCATGTGGGCACTTGGTTGGTTCTATCTGTACACCCTAGTCTCTTGAGA i macFas5.chr3 C 0 C 0 s papAnu2.chr3 6930088 719 - 180432695 AGTTCAATTAATAA--GGTGTTGATTTTGACTCAGTGAATGTTCACTGCAGATCTAAATAGTGTACTATGAGTTTCT-------------TCTGTCTTTCATGGAGTTTTTAATAAC---AAGAAAGTAATA----GTGACTCtcca----------tttgttctttgtttttgcctACTATACA---ACTATCatataagattattttttaaagtaccatttttttCTGGGAAGAGTCCTACCCTCCTCCTGGACATTCCCTTCTCCTGCTCTGAAACATGCCAGTAGCTTCTAGGTGTGTT-----GTT-----CTCATCCTTAAACTTTCTTGGCCTGATGTCTTTTGTTGGATCTGTTGATTTATAGATCCCagatcttccttttcttt-------atcctCATTCTGTTCCACATATCTCTCAGTAACTTTATTAGAAGGAGAATGAGGGAGCTGAATTTTGAGTCTT-CCTGTGTCTACAACGTATTCTGTCTTCACACACAGTTGCGTGTGTAGCTAGGTTGAGAATTGTACTTTGAAAAGTGTTTTCTTGTAGAATTGGAAACTTAT-----------GCATCTGGATTTGGGAAGTTTGgtgccattctgataggtgttcCTCTGAATTtaactcttttgttttcttctctggtATCTTTTAGGCTTTCAT----GTACCTCATGATCTGAATTTTTATTCTCCACCCTCATTACCTGCTGTGTCATTATCATGTGGGCACTTGGTTGGTTCTATCTGTACACCCTAGTCTCTTGAGA i papAnu2.chr3 C 0 C 0 s chlSab2.chr21 6829670 725 - 127223203 agttcaattaataa--ggtgttggttttgactcagtgagtgttcactgcagatctaagtagtgtactatgagtttct-------------tttgtctttcatgGAGTTTTTAATAAC---AAGAAAGTAATA----GTGACTCTCCA----------TTTGTTCTTTGTTTTTGCCTACTATACA---ACTATCATATAAGATTATTTTTTAAAGTACCATTTttttctgggaaaagtcctaccctcctcctggacattcccttctcctgctctgaaacatg-cggtagcttctaggtgtgtt-----gtt-----ctcatccttaaactttcctggcctgatgtcttttgttggatctgttgatttatagatcccaagtcttccttttctttataatacatcctcattctgttccatatatctctcagtaactttatcagaaggagaatgagggagctgaattttgagtctt-cctgtgtctacaacgtattctgtcttcacatacagttgcttgtgtagctaggttgagaattgtaccttgaaaagtgttttcctgtagaattggaaacttat-----------gcatctggatttgggaagtttggtgccattctgataggtgttcctttgaatttaactcttttgttttcttctctggtatcttttaggctttcat----gtacctcatgatctgaatttttaTTCTCCACCCTCATTAACTGCTGTGTCATTATCATGTGGGCACTTGGTTGGTTCTATCTGTATACCCTAGTCTCTTGAGA i chlSab2.chr21 C 0 C 0 s calJac3.chr8 94492311 737 + 128169293 agTTCAGTTAATAA--GGTATTGGTTATGATTCAGTAAATGTTTACTGCAGATGTAAATGGTGTACTACGAGTTTCT-------------TTTGTTTTTCATGAAGTTTTTAATAATAAGAAGAAAGTAAAA----GTGACTCTCTA----------TTCGTTCTTTGTTTTTGCCTGCTATAGA---ACTATCATATAAGATTATTTTGTGTAGTGCCATTTttttctgggaaaagtcctaccttcgtcctagacgttcccttttcctgctctaatatgtgccggtagcttttaggtttgttgctcagtt-----ctcatccttaaacttccctggcctgatggcctttgttggatc---tgatttctagatcccaactcttccttttctttataatatatcctcattctgttccacatatctctgactaactttattggaaggagaatgtgggagctgaattttgagtctt-cctgtgtctacaaggtattctgtcttcacactcagttgcttgtgtagctacgttgagaattgtactttgaaaagtgttttcttgtagaattggaaacttatacca--ttctagcatcgagagttgggaagtttggtgctattctgataggcgttcttttgaaaataa--cttttattttcttctctggtagtttttaggCTTTCAC----ATATGTCATGATCTCAGTTTTTATTCTGTACC-TCGTTACTTGCTGTTTCATTATAATGTGGGCACTTGATTGGTTCTATCTGTAGCCCCTAGTCTTTTGAGA i calJac3.chr8 C 0 C 0 s canFam3.chr16 43593517 759 - 59632846 -----AGTTAATAAACAGTGTCGGTTATGACTCAGCACATATTCACTGGAGACCTGAATAGTATACTCTGGCTTTGTCCTTTTTTTTGGCTTTGTCTTTCATGGAATTTTTAATAGAAAAAAGAAAGTAATGATTCATGATTCTTCAATTAGTTTTTGTTGTGTTTTGTTTTTACCTACTATAGAAGCATGATCGTATCAAATGATTCTGGCAAGTAAC-TTTTTACCTGGAAAAAGTCCTACC--CCTTCCCGACACTCCCATTTTCT-CTCTG---TGTGCTGGTAGCTTGTAGGTCTCTT-----GCTCAGCGCTCATTCTTCAGCTTCTCTGAGCTGAGGtcctatgttgggttcatcgtttcctgcatcacatgactttcttgttcttggtata-accctcatttccttcctcatgtcct----tacctccattccaagaggtgtttgggagctgaagtttgagtctt-tgtatccctaaaggaattacacttttcacacttaattgcttgtttc-cttggttaagaactgtatcttgagaagtttattcctatacatttggaaactgctactctattttagtatccagagttggaaagtttgatgccattttgatggttgttcctt---acttagctttcttattttcctctcaggtagcttttagactttcttattaatacctcatgatctcaatttttaTTCTGTATTTTAATTGCTTGCTGTCTCATTATAACACAACTACATTG-TGGTCTTGTCTATAAATTCTAGTGTTTTGAGA i canFam3.chr16 C 0 N 0 a score=5348.000000 s hg38.chr1_KI270765v1_alt 185283 2 + 185285 TC s panTro4.chr2A 22220168 2 - 113622374 TC i panTro4.chr2A C 0 N 0 s ponAbe2.chr7 7592002 2 - 157549271 TC i ponAbe2.chr7 C 0 N 0 s nomLeu3.chr13 7292229 2 - 110113093 tc i nomLeu3.chr13 C 0 N 0 s macFas5.chr3 7366196 2 - 192294377 TC i macFas5.chr3 C 0 N 0 s papAnu2.chr3 6930807 2 - 180432695 TC i papAnu2.chr3 C 0 N 0 s chlSab2.chr21 6830395 2 - 127223203 TC i chlSab2.chr21 C 0 N 0 s calJac3.chr8 94493048 2 + 128169293 TC i calJac3.chr8 C 0 N 0