##maf version=1 scoring=roast.v3.3 a score=1092.000000 s hg38.chr2_GL582966v2_alt 0 4 + 96131 ATAA s rheMac3.chr12 11888832 4 + 106825570 ATAA i rheMac3.chr12 N 0 C 0 s papAnu2.chr12 11250381 4 + 104110932 ataa i papAnu2.chr12 N 0 C 0 a score=215440.000000 s hg38.chr2_GL582966v2_alt 4 470 + 96131 acacacacagacatatatatcacacacat-----------acagacacaccacata--acatactgcacacg----catacatcatacacacacagacat--------------------------------------atacacatcacacacatatgcacacacagacacaccacacatcacataccacccctccacatacatcatacatatacacacagatatatacacaccacatacaaacacaccacacaccacacactatataccacacatgacccctacataacatcataaacatacagagatgtacacatcacacacatccatatagacacgcataccacacactatataccacaccccca-catacat---------catacacacacagacataccatataccagataccacacattgtatggcataccccctacatacacacacacagacacaccacacacacagagacaccccccacatatacatgcacacatacaggcagaacccacatatatcacacacaca s rheMac3.chr12 11888836 468 + 106825570 ACACACACAGATGTATATATcacacacat-----------acagacacaccacacaacacatactgcacatgcccccatacatcatacacacgcagacat--------------------------------------atacacatcacacac--ttgcacacacag---------acatcacataccacccctccacatacatcatacatatacacacaggtatatgcacaccacacacaaacacagcacacactacacacTGTATACCACATGTGACCCCTacat-acatcataaacatacagagaggtacacctcacacacctacatatggacatgcatatgtcacactatataccacacccccatcatacacacacagacatacacacatacagacataccatataccccacaccacacaTCGTATAGCATATCCCCcacatacacacacacacagacaccacatac----agacg-ctcccacatatacatgcacacataccgacagaccccacatatat-acacataca i rheMac3.chr12 C 0 C 0 s papAnu2.chr12 11250385 506 + 104110932 acacacacagacatatatatcacacacat-----------acagacacaccacacaacacatactgcacatgcccccatacatcatacacatgcagacatcacacacttgcacacacagacatcacacacttgcacacacagacatcacacac--ttgcacacacag---------acatcacataccacccctccacatacatcatacatatacacacaggtatatgcacaccacacacaaacacagcacacactacacactatataccacaTGTGACCCCTACAT-ACATCATAAACATACAGAGATGTACACCTcacacacctacatatgggcatgcatatgacacactatataccacacccccatcatacacacacagacatacacacatacagacataccatataccccacaccacacatcgtatagcataccccccacatacacacacacacagacaccacacac----agacg-ctcccacatatacatgcacacataccgacagaccccacatatat-acacataca i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34344927 478 + 128595539 acacacacagacatatatatcacacacatannnnnnnnnnacagacacaccacacaacacatactgcacatgcccccatacatcatacacacacagacat--------------------------------------atacacatcacacac--ttgcacacacag---------acatcacataccactcctccacatacatcatacatatacacacaggtatatgcacaccacacacaaacacagcacacactacaca-tgtataccacatgtgacccctacat-acatcataaacatacagagatgtacacctcacacacctacatatggacatgcatatgacacactatataccacacccccagcatacacacacagacatacacacatacagacataccatataccccacaccacacattgtatagcataccccccacatacacacacacacagacaccacacac----agacg-ctcccacatatacatgcacacataccgacagaccccacatatat-acacataca i chlSab2.chr10 N 0 C 0 a score=6073.000000 s hg38.chr2_GL582966v2_alt 474 17 + 96131 --acacacacgcatacac----------a s rheMac3.chr12 11889304 27 + 106825570 --acacacacacatacccccatatacaca i rheMac3.chr12 C 0 C 0 s papAnu2.chr12 11250891 23 + 104110932 --acacacacacatacccccatat----a i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34345405 22 + 128595539 --acacacacacatacccccatat----- i chlSab2.chr10 C 0 C 0 s mm10.chr2 49685228 17 + 182113224 acacacatgcacatatg------------ i mm10.chr2 N 0 C 0 a score=55130.000000 s hg38.chr2_GL582966v2_alt 491 62 + 96131 cacacacacacacactctgcatacatcatacagacacagacaccacatatcacacatataca s rheMac3.chr12 11889331 62 + 106825570 cacacacacacacacaccgcatacatcatacagacacagacaccacatatcacacatataca i rheMac3.chr12 C 0 C 0 s papAnu2.chr12 11250914 62 + 104110932 cacacacacacacacaccgcatacatcatacggacacagacaccacatatcacacatataca i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34345427 61 + 128595539 -acacacacacacacaccgcatacatcatacagacacagacaccacatatcacacatataca i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87832668 62 - 158406734 catacagacacacaacccacatacatcacacagacacagacaccacatatcacacatataca i calJac3.chr6 N 0 C 0 s mm10.chr2 49685245 38 + 182113224 cacacacattcacac--------------acaGAGATAG----------TCATTTGTATATA i mm10.chr2 C 0 C 0 a score=45432.000000 s hg38.chr2_GL582966v2_alt 553 38 + 96131 atacacacacgccacagaatgccacacagccacacaca----- s ponAbe2.chr2b 38324988 38 + 135000294 ATACACACACACCACAGAATGCCACACAGCCACACACA----- i ponAbe2.chr2b N 0 I 26 s rheMac3.chr12 11889393 28 + 106825570 ATACACACACACCACAGAATGCCACACG--------------- i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37593581 28 + 132586672 ATACACACACACCACAGAATGCCACACG--------------- i macFas5.chr12 N 0 C 0 s papAnu2.chr12 11250976 28 + 104110932 atacacacacaccacagaatgccacacg--------------- i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34345488 28 + 128595539 atacacacacaccacagaatgccacacg--------------- i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87832730 38 - 158406734 atacacacacaccacaaaataccacacatccacacaca----- i calJac3.chr6 C 0 C 0 s mm10.chr2 49685283 42 + 182113224 GTATACATTTTCCATAT-ATGTCACACAGGCATTCTCCatgta i mm10.chr2 C 0 C 0 a score=28465.000000 s hg38.chr2_GL582966v2_alt 591 26 + 96131 tcacaagcacccccacactcgccaca s rheMac3.chr12 11889421 26 + 106825570 CCACAAGCACTCCCACACTCGCCACA i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37593609 26 + 132586672 CCACAAGCACTCCCACACTCGCCACA i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11251004 26 + 104110932 ccacaagcactcccacactcgccaca i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34345516 26 + 128595539 ccacaagcactcccacactcgccaca i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87832768 26 - 158406734 caACAAGCACCCACCCACTTGCTACA i calJac3.chr6 C 0 C 0 s mm10.chr2 49685325 9 + 182113224 ----------tcacacaca------- i mm10.chr2 C 0 C 0 e ponAbe2.chr2b 38325026 26 + 135000294 I a score=72598.000000 s hg38.chr2_GL582966v2_alt 617 41 + 96131 cttcctacattcacgctatagcacatacctgcacacattcc s ponAbe2.chr2b 38325052 41 + 135000294 CTTCCTACATTCACACTATAGCACATACCTGCACATATTCG i ponAbe2.chr2b I 26 C 0 s rheMac3.chr12 11889447 41 + 106825570 CTTCCTACATTCACGCTATAGCACATGCCTGCACACATTCC i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37593635 41 + 132586672 CTTCCTACATTCACGCTATAGCACATGCCTGCACACATTCC i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11251030 41 + 104110932 cTTCCTACATTCACGCTATAGcacatgcctgcacacattcc i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34345542 41 + 128595539 cttcctacattcacgctatagcacatgcctgcacacattcc i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87832794 41 - 158406734 CTTCCTACATTCATGCTATAGCAGATAACTGcacacatact i calJac3.chr6 C 0 C 0 s mm10.chr2 49685334 29 + 182113224 tctcccacatacattatatag-----------acacagac- i mm10.chr2 C 0 C 0 a score=92179.000000 s hg38.chr2_GL582966v2_alt 658 43 + 96131 ctacgtccatctcacacacatataaccccc-acatcacacatat s ponAbe2.chr2b 38325093 44 + 135000294 CTACATCCATCTcacacacatatacccccccacatcacacatac i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82275854 43 - 85365473 CTACATCCATCTcacacacatatacccccc-acttcacacatac i nomLeu3.chr20 N 0 C 0 s rheMac3.chr12 11889488 43 + 106825570 CTACATCCATCTCACACACATATATGCCCC-ACATCACACATAC i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37593676 43 + 132586672 CTACATCCATCTCACACACATATATGCCCC-ACATCACACATAC i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11251071 43 + 104110932 ctacatccatctcacacacatatatgcccc-acatcacacatac i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34345583 43 + 128595539 gtacatccgtctcacacacatatatgcccc-acatcacacatac i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87832835 36 - 158406734 -------catcttacaaacatatatgcccc-acatcacacacat i calJac3.chr6 C 0 C 0 s mm10.chr2 49685363 39 + 182113224 --acatcta-cttatacaggagtatgccac-atgtt-taaatat i mm10.chr2 C 0 C 0 a score=152642.000000 s hg38.chr2_GL582966v2_alt 701 52 + 96131 atg-ta---atactccacatacatcacac---gcccccacacac---gcagacgtagccctc s panTro4.chr2B 153122110 52 + 247518478 ATG-TA---ATACTCcacatacatcacac---gcccccacacac---gcagacataaccctc i panTro4.chr2B N 0 C 0 s ponAbe2.chr2b 38325137 53 + 135000294 atgtta---atactccacatatatcacac---acccccacacac---gcagacataaccctc i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82275897 53 - 85365473 atgtta---atactccacatacatcacac---gcccccacacac---gcagacataaccccc i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11889531 53 + 106825570 ATGTTA---ATACTCCACGTACATCACAC---GCCCCTACACAT---GCAGACATAACCCTC i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37593719 53 + 132586672 ATGTTA---ATACTCCACGTACATCACAC---GCCCCCACACAT---GCAGACATAACCCTC i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11251114 53 + 104110932 atGTTC---ATACTCCACGTACATCACAC---Gcccccacacat---gcagacgtaaccctc i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34345626 53 + 128595539 atgtta---atactccacgtacatcacac---gcccccacacat---gcagacataaccctc i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87832871 50 - 158406734 --gtta---atactccacatccatcacat---gcccc-acacac---gcagacatacccctc i calJac3.chr6 C 0 C 0 s mm10.chr2 49685402 60 + 182113224 atgccacacacattccatatatgtcacacagagcatatacttactgttcagacat--ccttt i mm10.chr2 C 0 C 0 a score=268102.000000 s hg38.chr2_GL582966v2_alt 753 110 + 96131 aca-ccccacacgtatatcacacacagacat--atac----tacacacatcacacatccatatgctcccctaacactacacaca--------------------------cacacacacgtgc-acactccacaTGCCCCTACA s panTro4.chr2B 153122162 110 + 247518478 aca-ccccacacgtatatcacacacagacat--atac----tacacacatcacacatccatatgctcccctaacactacacaca--------------------------cacacacacgtgc-acactccacatgcccctaca i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38325190 99 + 135000294 acacccccacacgtatatcatacacagacat--atac--cacacacacatcacacatccatatgctcccctaacaccacaca----------------------------------------c-acacTCCACATGCCCCTACA i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82275950 140 - 85365473 aca-ccccacacgtgtatcacacacaggcat--ataccacacacacacatcacacaTCCATATGCTCCCCTAACACcacactcacgtacacacacacacacacacacacgcacacacgcacgc-acacTCCACATGCCCCTACA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11889584 129 + 106825570 ACA-CCCTACACTTGTATcacacacagacat--acac--cacacacacatcacacatccatatgctcccctaacacgacacaca--------cacacagacacacacacacacacacacaGGC-ACGCTCCACATG-CCCTACA i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37593772 127 + 132586672 ACA-CCCTACACATGTATCACACACAGACAT--ACAC--CACACACACATCACACATCCATATGCTCCCCTAacacgacacaca--------cacacag--acacacacacacacacacaGGC-ACGCTCCACATG-CCCTACA i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11251167 127 + 104110932 aca-ccctacacatgtatcacacacagacat--acac--cacacacacatcacacatccatatgctctcctaacacgacacaca--------cacacag--acacacacacacacacacaggc-acgctCCACATG-CCCTACG i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34345679 129 + 128595539 aca-ccctacacatgtatcacacacagatat--acac--cacacacacatcacacatccatatgctcccctaacatgacagaca--------cacacagacacatacacacacacacacaggc-acgctccacaTG-CCCTACA i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87832921 92 - 158406734 aca-ctccacacatatatcacacacagacat--acac--------------acacatctatatgctcctctaacaccacacaca--------------------------caca--------c-acGTTCCACATGCCCCTATA i calJac3.chr6 C 0 C 0 s mm10.chr2 49685462 95 + 182113224 aca------tacatacatcacacacaaatac--atta--tatatgtatat-acatatatatatac------------atacaca--------------------------cacaaacacatacaactcttttcatactgccaca i mm10.chr2 C 0 I 145 s canFam3.chr19 50596198 104 + 53741614 ACA-CCTCTC---TGTCTcatacacacacatcaacac--tcccccaacaccactcatacccctgtactacatacatcacaccca--------------------------cacccacac---c-atataccatgtatacc---- i canFam3.chr19 N 0 C 0 a score=1062302.000000 s hg38.chr2_GL582966v2_alt 863 306 + 96131 TCCTCCCCTGCGTACACACACCTGCAGATTGTTTCGGCAGGCCCAGTTTGCTGCACATAA------AGCCCTTACCACTCTTGGGCATCTGAGCTGGATCAAGCAGCCCAGCTCCTAGGCCTGTGGTAGATGTGGGTAT-GCTTCTGTTCCTGTGGGGATGGGAGGC--ATTATTATGA------------GAACACTCACTTTTCTCACAT-TGATTTTAGGGTGAGGACTTCAGAGAGACACAAAGTAGAGAGTGTCCTAGATTCATCTCTCGTTCTGCCTTGGTTCTTGCCCTGACAAAGGCAAACAAAGAGATGTCAGCACTTG s panTro4.chr2B 153122272 306 + 247518478 tcctcccctgcgtacacacacCTGCAGATTGTTTCGGCAGGCCCAGTTTGCTGCACATAA------AGCCCTTACCACTCTTGGGCATCTGAGCTGGATCAAGCAGCCCAGCTCCTAAGCCTGTGGTAGATGTGGGTAT-GCTTCTGTTCCTGTGGGGATGGGAGGC--ATTATTATGA------------GAACACTCACTTTTCTCACAT-TGATTTTAGGGTGAGGACTTCAGAGAGACACAAAGTAGAGAGTGTCCTAGATTCATCTCTCGTTCTGCCTTGGTTCTTGCCCTGACAAAGGCAAACAAAGAGATGTCAGCACTTG i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38325289 305 + 135000294 TCCGCCCCTGCATACACACACCTGCAGATTGTTTCGGCAGGCCCAGTTTACTGCACATAA------AGCCCTTACCACTCTTGGGCATCTGAGCTGGATCAAGCAGCCCAGCTCCTAGGCCTGCGGTAGATGTGGGTAT-GCTTCTGTTCCTGTGGGGATGGGAGGC--ATTATTATGA------------GAACACTCACTTTTCTCACAT-TGATTTTAGGGTGAGGACTTCAGAGAGACACAAAGTAGAGAATGTCCTAGATTCATCTCTCGTTCTGCCTTGGTTCTTGCCCTGACAAAGGCAAACAAAG-GATGTCAGCACTTG i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82276090 307 - 85365473 TCCTCCCCTGCATACACACACCTGCAGATTGTTTCGGCAGGCCCAGTTTACTGCACATAA------AGCCCTTACCAGTCTTGAGCATCTGAGCTGGATCAAGCAGCCCAGTTCCTAGGCCTGCGGTAGATGTGGGTAT-GCTTCTGTTCCTGTGGGGATGGGAGGCATATTATTATGA------------GAACACTCACTTCTCTCACAT-TGATTTTAGGGTGAGGACTTCAGAGAGACACAAAGTAGAGAGTGTCCTAGATTCATCTCTCGTTCTGCCTTGGTTCTTGCCCTGACAAAGGCAAACAAAGGGATGTCAGCAC-TG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11889713 306 + 106825570 TCCTCCCCTGCATACGCACACCTGCAGATTGTTTCGGCAGGCCTAGTTTACTGCACACAA------AGCCCTTACCGCTCTTGAGCATCTGAGCTGGATCAAGCAGGCCAGCTGCTAGGCCTGCAGTGGATTTGGGTAT-GCGTCTGTTCCTGTGGGGATGGGAGGC--ATTATTATGA------------GAACACTCACTTTTCTTACAT-TGATTTTAGGGTGAGGACTTCAGAGAGACACAAAGTAGAGAGTGTCCTAGATTCATCTCTGGTTCTGCCTTGGTTCTTGCCCTGACAAAGGCAAACAAAGGGATGTCAGCACTTG i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37593899 306 + 132586672 TCCTCCCCTGCATACGCACACCTGCAGATTGTTTCGGCAGGCCTAGTTTACTGCACACAA------AGCCCTTACCGCTCTTGAGCATCTGAGCTGGATCAAGCAGGCCAGCTGCTAGGCCTGCAGTGGATTTGGGTAT-GCGTCTGTTCCTGTGGGGATGGGAGGC--ATTATTATGA------------GAACACTCACTTTTCTCACAT-TGATTTTAGGGTGAGGACTTCAGAGAGACACAAAGTAGAGAGTGTCCTAGATTCATCTCTGGTTCTGCCttggttcttgccctgacaaaggcaaacaaagggatgtcagcacttg i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11251294 306 + 104110932 TCCTCCCCTGCATACGCACACCTGCAGATTGTTTCGGCAGGCCTAGTTTACTGCACACAA------AGCCCTTACCGCTCTTGGGCATCTGGGCTGGATCAAGCAGGCCAGCTGCTAGGCCTGCAGTGGATTTGGGTAT-GCGTCTGTTCCTGTGGGGATGGGAGGC--ATTATTATGA------------GAACACTCACTTTTCTCACAT-TGATTTTAGGGTGAGGACTTCAGAGAGACACAAAGTAGAGAGTGTCCTAGATTCATCTCTGGTTCTGCCTTGGTTCTTGCCCTGACAAAGGCAAACAAAGGGATGTCAGCAGTTG i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34345808 306 + 128595539 TCCTCCCCTGCATACGCACACCTGCAGATTGTTTCAGCAGGCCTAGTTTACTGCACACAA------AGCCCTTACCGCTCTTGGGCATCTGAGCTGGATCAAGCAGGCCAGCTGCTAGGCCTGCAGTGGATTTGGGTAT-GCGTCTGTTCCTGTGGGGATGGGAGGC--ATTATTATGA------------GAACACTCACTTTTCTCACAT-TGATTTTAGGGTGAGGACTTCAGAGAGACACAAAGTAGAGAGTGTCCTAGATTCATCTCTGGTTCTGCCTTGGTTCTTGCCCTGACAAAGGCAAACAAAGGGATGTCAGCACTTG i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87833013 299 - 158406734 TCCTCCTCTGCGTACACATGCCTGCAGATTGTTTCAGCAGGCCCAGTTCACTGCACATAA------AGCCCTTAACACTCTTGGACAACTGAGTTAGGTCAAGCAGCACAGCTCCTAGGCCTATAGTAGATGTGGGTATCGCTTCTGTTCCTGTGGGGATGGGAGGC--ATTATTATGA------------GAACAATCACTTTTCTCACAT-TGATTTTAGGGTGAGGACTTCAGAAAGACACAAAGTACAGAGTGTCCTAGATTCATCTCTGGTTGTGCCTTGGTTCTTGCCCTGACAAAGAAAAACAAAGGG--------ACTTG i calJac3.chr6 C 0 C 0 s canFam3.chr19 50596302 316 + 53741614 -----ccccacgcacacacac--acaGGTTGTCTTGTCAGCCTCAGTTTACTA-ACATAAACATTCAGTTCTCATCACTCTTGGGCTGATGAGCTGGATCAAGCATCCCAGCCCCTAAACCTGTGGTAGATTTGAGTATTACTTCCGTGATCATGGGATTGGGAGGT--ATTGTTATGCCTCCTTCCAGATAAACATGTGTTTCCCTCTCGTGTAACTTTTGGGTGTGGGCTTCAGGGAA--ACAAAACAGGGAGTATCCCAGACTCATCCCTCGTTCTGCCTTGGTTCTTACCCTAACAAAGGCAAACAAAGGGATGTCAATATTTG i canFam3.chr19 C 0 C 0 e mm10.chr2 49685557 145 + 182113224 I a score=1500666.000000 s hg38.chr2_GL582966v2_alt 1169 416 + 96131 TATAAGCCAGGAATCAATGGGGAGATAAATCCATTGAAAGGGAAAGCATCTAGGaaaatagatttgagtcaattataaatgatttttggattatcaatcgttctTCTCTGGCTGTGGGCTACTGAGGAGAAGCTA--AAGGATTATCATGAATTATTAAAAAGCTCTGGAGGGCTTTGGTAGGG------GAGGTCTTTTGATTGGCTGAGTGGAGTCATGACATTTGGCCAGATGGAAATGATGTTCTC--ACCATAGGTATTGTTTCTGCCAATGATCTCCATGGTTCAGAGCATGTGGAGGTCCATTGTCTAATTTGTTACACATTTATGATGGAATGTACAGTTTAAAAGTTATCAAGATTT--GAGATTGTCAGTC-------ATTTGGCACTGTTTTCTTTCCTAAGATA---TATATTAATTGTCAGGGAT s panTro4.chr2B 153122578 420 + 247518478 TATAAGCCAGGAATCAATGGGGAGATAAATCCATTGAAAGGGAAAGCATCTAGGAAAATAGATTTGAGTCAATTATAAATGATTTTTGGATTATCAATCGTTCTTCTCTGGCTGTGGGCTACTGAGGAGAAGCTA--AAGGATTATCATGAATTATTAAAAAGCTCTGGAGGGCTTTGGTAGGG------GAGGTCTTTTGATTGGCTGAGTGGAGTCATGACATTTGGCCAGATGGAAATGATGTTCTC--ACCATAGGTATTGTTTCTGCCAATGATCTCCATGGTTCAGAGCATGTGGAGGTCCATTGTCTAATTTGTTACACATTTATGATGGAATGTACAGTTTAAAAGTTATCAAGATTT--GAGATTGTCAGTCT---GTCATTTGGCACTGTTTTCTTTCCTAAGATA---TATATTAATTGTCAGGGAT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38325594 419 + 135000294 TATAAGCCAGGAATCAATGGGGAGATAAATCCATTGAAAGGGAAAGCATCTAGGAAAATAGATTTGAGTCAATTATAAATGATTTTTGGATTATCAATCGTTCTTCTCTGGCTGTGGGCTACTGAGGAGAAGCTA--AAGGATTATCATGAATTATTAAAAAGCTCTTGAGGGCTTTGGTGGGG------GAGGTCTTTTGATTGGCTGAGTGGAGTCATGACATTTGACCAGATGGAAATGATGTTCTC--ACCATA-GTATTGCTTCTGCCAATGATCTCCATGGTTCAGAGCATATGGGGGTGCATTGTCTAATTTGTTACATGTTTATGATGGAATATACAGTTTAAAAGTTATCAAGATTT--GAGATTGTCAGTCT---GTCATTTGGCACTGTTTTCTTTCCTAAGATA---CATATTAATTGTCAGGGAT i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82276397 419 - 85365473 TATAAGCCAGGAATCAATGGGGAGATAAATCCATTGAAAGGGAAGGCATCTAGGAAAATAGATTTGAGTCAATTATAAATGATTTTTGGATTATCAATCATTCTTCTCTGGCTGTGGGCTACTGAGGAGAAGCT---AAGGATTATCATGAATTATTAAAAAGCTCTGGAGGGCTTTGGTAGGG------GAGGTCTTTTGATTGGCTGAGTGCAGTCATGACATTTGACCAGATGGAAATGATGTTCTC--ACCATAGGTGTTGTTTCTGCCAGTGATCTCCATGATTCAGAGCATGTGGGGGTCCATTGTCTAATTTGTTACACGTTTATGGTGGAATATACAGTTTAAAAGTTATCAAGATTT--GAGATTGTCAGTCT---GTCATATGGCACTGTTTTCTTTCCTAAGATA---TATATTAATTGTCAGGGAT i nomLeu3.chr20 C 0 I 309 s rheMac3.chr12 11890019 420 + 106825570 TATAAGCCAGGAATCAATGGGGAGATGAATCCATTGAAAGGGAAAGCATATAGGAAAATAGATGTGagtcaattataaatgatttttggattatcagtcgttctTCTCTGGCTGTGGGCTACTGAGGAGAAGCTA--AAGGATTATCATCAATTATTAAAAAGCTCTGGAGGGCTTGGGTAGGG------GAGGTCTTTTGATTGGCTGAGTGGAGTCATGACATTTGACAATACGGAAATGATGTTCTC--ACCATAGGTATTGTTCCTGCCAGTGATCTCCATGCTTCAGAGCATGTGGGGGCCCATTGTCTAATTTGTTACATGTTTATGATGGAATATACAGTTTAAAAGTTATCAAGATCT--GAGATTGTCAGTCT---GTCATTTGGCACTGTTTTCTTTCCGAAGATA---TGTATTAATTGTCAGAGAT i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37594205 420 + 132586672 tataagccaggaatcaatggggagataaatccattgaaagggaaagcatataggaaaatagatgtgagtcaattataaatgatttttggattatcagtcgttctTCTCTGGCTGTGGGCTACTGAGGAGAAGCTA--AAGGATTATCATCAATTATTAAAAAGCTCTGGAGGGCTTGGGTAGGG------GAGGTCTTTTGATTGGCTGAGTGGAGTCATGACATTTGACAATACGGAAATGATGTTCTC--ACCATAGGTATTGTTCCTGCCAGTGATCTCCATGCTTCAGAGCATGTGGGGGCCCATTGTCTAATTTGTTACATGTTTATGATGGAATATACAGTTTAAAAGTTATCAAGATCT--GAGATTGTCAGTCT---GTCATTTGGCACTGTTTTCTTTCCGAAGATA---TGTATTAATTGTCAGAGAT i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11251600 420 + 104110932 TATAAGCCAGGAATCAATGGGGAGATAAATCCATTGAAAGGGAAAGCATATAGGAAAATAGATGTGAGTCAATTATAAATGATTTTTGGATTATCAGTCGTTCTTCTCTGGCTGTGGGCTACTGAGGAGAAGCTA--AAGGATTATCATCAATTATTAAAAAGCTCTGGAGGGCTTGGGTAGGG------GAGGTCTTTTGATTGGCTGAGTGGAGTCATGACATTTGACAATACGGAAATGATGTTCTC--ACCGTAGGTATTGTTCCTGCCAGTGATCTCCATGCTTCAGAGCATGTGGGGGCCCATTGTCTAATTTGTTACATGTTTATGATGGAATATACAGTTTAAAAGTTATCAAGATCT--GAGATTGTCAGTCT---GTCATTTGGCACTGTTTTCTTTCCTAAGATA---TGTATTAATTGTCAGAGAT i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34346114 420 + 128595539 TAtaagccaggaatcaatggggagataaatccattgaaagggaaagcatataggaaaatagatgtgagtcaattataaatgatttttggattatcagtcgttctTCTCTGGCTATGGGCTACTGAGGAGAAGCTA--AAGGATTATCATCAATTATTAAAAAGCTCTGGAGGGCTTGGGTAGGG------GAGGTCTTTTGATTGGCTGAGTGGAGTCATGACATTTGACAATACGGAAATGATGTTCTC--ACCATAGGTATTGTTCCTGCCAGTGATCTCCATGCTTCAGAGCATGTGGGGGCCCATTGTCTAATTTGTTACATGTTTATGATGGAATATACAGTTTAAAAGTTATCAAGATCT--GAGATTGTCAGTCT---GTCATTTGGCACTGTTTTCTTTCCTAAGATA---TGTATTAATTGTCAGAGAT i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87833312 415 - 158406734 TATAAGCCAGGAATCAATGGGGAGATAAATCCATTGAAAGGGAAAGCATCTAGGAAAATAGATTTGAGTCAATTATAAATGATTTTTGGAGTATCAATCCTTCTTTTCTGGCTGTGGGCTACTGAGGAGAAGCTA--AAGGATTATCATGAATTATTAAAAAGCTCTGGAGGGCTGGGATAGAG------GACATCTTTTGATTGGCTGAGTGGAGTCATGACATTTGACCAGATGGAAGTGATGTTCTC--ACCATAGGTATTGTTTCTGCCAATGATCTCCACAGTTCAGAGCATGTGG-GGTCCATTGTCTAATTTGTTACATGTTTTTGATGGAATATACAGTTTAAAAGTTCTCAAGATTT--GAGATTGTCAGTC-------ATTTGGTGCTGTTTTCTTTCCTAAGATA---CATATTAATTGTCAGGGAT i calJac3.chr6 C 0 C 0 s mm10.chr2 49685702 383 + 182113224 TTTAAGTCAGGAATCAGT-AAAAGATG-GTCTATTGGAAGAGAAC-CATCTAGGAAAACACATTTGAGTAAAGTATAAATGACTTTTAGATTACCAGTCATTC---TCTGGTAGTGGACCA--GAGAAGAATCTGCTATGGGTTACCATGGGTTATTCAAGAGCCCTGGAGG--TTTTGTTGAA------AAG---TCTTGATTGGCTGAGTGGGGTAGTACAATTTAACTGCAAGAAAAT-CTGTCCTTTAATCCTAGGGATT-CTTTTGCCAGTAGTTTCTGCAGCGTAGAGCTCATGG----CTGTGGTCTGTTTTGTTG-GTGTTTATGATGACCTATGTGATGTAAATGTGATCAGGT-------------------------ATTTGGTGCCGT----TTTCCTAAGATACTGTAAGGTAGTAGCCTGGAAT i mm10.chr2 I 145 C 0 s canFam3.chr19 50596618 389 + 53741614 TATGAGCTAGGAATCGAT----------------TGGAAGGGGAGGTGTCTAGGGAAATGGCTTTGAGTCCTTTGTAAATGATTTTTGGATTATCTCTCATTCTTCTTTGTCTGTGGGCCACTGAGGAGAAGCTA--AAGGATTATGATGGATTATTGAAGGGTCCTGGGGGGCACTCCTCAGACCCTCTGAGG----TGGATTGGCCCAAGGGCATCACAACATTTGACAGGACAGAGAT-CTGTTTTC--ACCGTCCTTGTCATTTCTGCCAGCAGTTTGCACAGTCTTGAGCCTGTGGGGCCTGAT------ATTTG----ATGTTTACGAAGGCCTCTG-AGTAGAAAGGTTACCAACATTGGAGAGATTCTGATTCTCAGAACATTTGGGGCTGT----TTTCCTAGGATT---CATG------GTCTGGGAT i canFam3.chr19 C 0 C 0 a score=1003328.000000 s hg38.chr2_GL582966v2_alt 1585 285 + 96131 AGAAATGTGTT-TCA-GTCTCTTCAGGTGAAA----TAAACTGCA--ATAATTTCTTCGTGAAAACCTGCTGTGAGCTGAGTGATATAATACTAACATTTATTTTAGCCCTTCTCATGTCACTAAGCACTTTATATATCCTATTTAACTTGAATTCTACAATAATTCTATGTAATAA---------ATACTAAATCTTGTAAGCAATGGAGAGAAATATACATGCACTGGCCATCCCTATCTTTAGGAAGTATGCAGTCAAACTAAAAAACAAGAGCAATACATCAAACTATTTA-GATTCTT s panTro4.chr2B 153122998 285 + 247518478 AGAAATGGGTT-TCA-GTCTCTTCAGGTGAAA----TAAACTGCA--ACAACTTCTTCGTGAAAACCTGCTATGAGCTGAGTGATATAATACTAACATTTATTTTAGCCCTTCTCATGTCACTAAGCACTTTATATATCCTATTTAACTTGAATTCTACAATAATTCTATGTAATAA---------ATACTAAATCTTGTAAGCAATGGAGAGAAATATACATGCACTGGCCATCCCTATCTTTAGGAAGTATGCAGTCAAACTAAAAAACAATAGCAATACATCAAACTATTTA-GATTCTT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38326013 285 + 135000294 AGAAATGTGTT-TCA-GACTCTTCAGGTGAAA----TAAACTCCA--ACAACTTCTTCGTGAGAACCTGCTATGAGCTGAGTGATATAATACTAACATTTGTTTTAGCTCTTCTCATGTCACTAAGCACTTTATATATCCTATTTAACTTGAATTCTACAATAATTCTATGTAATAA---------ATGATAAATCTTGTAAGCAATGGAGAGAAATATACAAGCACTGGCCATCCCTATCTTTAGGAAGTATGCAGTCAAACTAAAAAACAATATCAATACATCAAACTATTTA-GATTCTT i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82277125 285 - 85365473 agaaaTGTGTT-TCA-GACTCTTCAGGTGAAA----TAAACTCCA--ACAACTTCTTCGTGAGAACCTGCTATAAGCTGAGTGCTATAATACTAACATTTATTTTAGCCCTTCTCATGTCACTAAGCACTTTATATATCCTATTTAACTTGAATTCTACAATAATTCTATGTAATAA---------ATACTAAATCTTGTAAGCAATGGAGAGAAATATACATGCACTGGCCTTCCCTATCTTTAGGAAGTATGCAGTCAAACCAAAAAACAGTATCAATACATCAAACTATTTA-GATTCCT i nomLeu3.chr20 I 309 C 0 s rheMac3.chr12 11890439 285 + 106825570 AGAAATGTGTT-TCA-GACTCTTCAGGTGAAA----TAAACTCCA--ACAACTTGTTCGTGAGAACCTCCTATGAGCTGAGTGATATAATACGAACATTTATTTGAGCCCGTCCCATGTCACTAAGCACTTTATATATCCTATTTAACTTAAATTATACAATAATGCTATGTAATAA---------ATACTAAATTTTATAAGCAATGGGGAGAAATATACATGCACTGGCCATCCCTATCTTTAGGAAGTATGCAGTCAAACTAAAAAACAATATCAATACATCAAACTATTTA-GATTCTT i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37594625 285 + 132586672 AGAAATGTGTT-TCA-GACTCTTCAGGTGAAA----TAAACTCCA--ACAACTTGTTCGTGAGAACCTCCTATGAGCTGAGTGATataatacgaacatttatttgagcccgtcccatgtcactaagcactttatatatcctatttaacttaaattatacaataatgctatgtaataa---------atactaAATTTTGTAAGCAATGGGGAGAAATATACATGCACTGGCCATCCCTATCTTTAGGAAGTATGCAGTCAAACTAAAAAACAATATCAATACATCAAACTATTTA-GATTCTT i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11252020 285 + 104110932 AGAAATGTGTT-TCA-GACTCTTCAGGTGAAA----TAAACTCCA--ACAACTTGTTCGTGAGAACCTCCTATGAGCTGAGTGATATAATACTAACATTTATTTGAGCCCGTCCCATGTcactaagcactttatatatccTATTTAACTTAAATTATACAATAATGCTATGTAATAA---------ATACTAAATTTTGTAAGCAATGGAGAGAAATATACATGCACTGGCCATCCCTATCTTTAGGAAGTATGCAGTCAAACTAAAAAACAATATCAATACATCAAACTATTTA-GATTCTT i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34346534 285 + 128595539 AGAAATGTGTT-TCA-GACCCTTCAGGTGAAA----TAAACTCCA--ACAACTTGTTCGTGAGAACCTCCTATGAGCTGAGTGATATAATACTAACATTTATTTGAGCCCGTCCCATGTCACTAAGCACTTTATATATCCTATTTAACTTAAATTATACAATAATGCTATGTAATAA---------ATACTAAATTTTGTAAGCAATGGAGAGAAATATACATGCACTGGCCATCCCTATCTTTAGGAAGTATGCAGTCAAACTAAAAAACAATATCAATACATCAAACTATTTA-GATTCTT i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87833727 282 - 158406734 AGAAATGTATT-----GACTCTTCAGGTGAAA----TAAACTCCA--ACAATTTCTTCATGAGAACCTGCTATGAGCTGAGTGATACAATACTAACATTTATTTGAGCCCTTCCTGAGTCACTAAGCATTTCATATATCCTATTTAATTTAAATTCTACGATAATTCTATGTAATAA---------ATGCTAAATCTTGTAAGCAATGGAGAGAAATATACATGCACTGGGCATCTCTATCTTTAGGAAGTATGCAGTCAAACTAAAAAGCAATATCAACACATCAAACTATTTA-GACTCTT i calJac3.chr6 C 0 C 0 s mm10.chr2 49686085 242 + 182113224 AGGGTGTTGTC-TTATAACTTCTTAGGTCAAG----TCAGCCCCACCCCAACTCA---GTGAGGACCTATGAGGAGATGAATGTTAT-ACACTAACATGTA-TTGAGTCCTTCCTGTTGCAGGGAACACTTCGTATATTCTATT-------GACTCTGCACTAATTTTATGCAGTAA---------ACCCTGAGTGTTA-----------------------------GGCCAACCCCATTTTTAATGTGTCTAGAACCAAACTAAAACACAGTGTAAATATATC-----ATttg-gatactt i mm10.chr2 C 0 I 1169 s canFam3.chr19 50597007 284 + 53741614 AGAAATGTATTTTCA-GACTCTTCCGGTTAAACAACTAACAACTA--ACATCTGCTTAATGAGAACCTGATATGAGCTGAATAATACAATGCCAACATTTATT--------------GTTTCTAAGTACTTTATGTATGCTGCTTAATTTAACTTCTGTAATAATTCTGTGCAGGAGACACTGCATATACTAAGAATCATAAGCAGTGGGAAGAAATACGTGTGCACTGGCCATCT-TGCTTTCAGGGACTGTAGAGTCCAAC-AATAAGCCATATAAACACATCACATGATGTAGGGCTCTT i canFam3.chr19 C 0 C 0 a score=765598.000000 s hg38.chr2_GL582966v2_alt 1870 260 + 96131 AATAGATAAGGGCATTCCAGAGGAGTATCCATTTTTCCGGATGAGAGAGCTTTGCTGGAGGCCAGA--CTgccggacgtggtggctca--tgcctgtaatc----------ccagcactctgggaagccaaggtgg---------gtggatcactttgagctcaggagttggagaccag-------------------ccttggcaac-----------------------------------------actgcgaaacctcatctctacaaaaaatacaaaaaattagccagctgcggtggtgcacacctgtagttccagctactagggaagct-------gaggatca s panTro4.chr2B 153123283 260 + 247518478 AATAGATAAGGGCATTCCAGAGGAGTATCCATTTTTCCGGATGAGAGAGCTTTGCTGGAAGCCAGA--CTgccggacgtggtggctca--tgcctctaatc----------ccagcactctgggaagccaaggtgg---------gtggatcactttgagctcaggagttggagaccag-------------------ccttggcaac-----------------------------------------actgcgaaacctcatctctacaaaaaatacaaaaaattagccagctgcggtggtgcacacctgtagttccagctactagggaagct-------gaggatca i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38326298 260 + 135000294 AATAGATAAGGGCATTCCAGTGGAGTATCCATTTTTCCAGACGAGAGAGCTTTGCTGGAAGCCAGA--CTgccggacgtggtggctca--tgcctgtaatc----------ccagcactctgggaagccaaggtgg---------gcgaatcactttgagctcaggagttggagaccag-------------------ccttggcaac-----------------------------------------actgcgaaatctcatctctacaaaaaatagaaaaaattagccagctgtggtggtacacacctgtagttccagctactagggaagct-------gaggatca i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82277410 256 - 85365473 A----ATAAGGGCATTCCAGAGGAGTATCCATTTTTCCGGACGAGAGAGCTTTGCTGGAAGCCAGA--CTgctggacgtggtggctca--tgcctgtaatc----------ccagcactctgggaagccaaggtgg---------gaggatcactttgagctcaggagttggagaccag-------------------ccttggcaac-----------------------------------------actgcgaaacctcgtctctacaaaaaatacaaaaaattagccaggtgtggtggtgcacacctgtagttccagctactaggaaagct-------gaggatca i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11890724 266 + 106825570 AATAGATAAGGGCATTCCAGAGGAGTACCCATTTTTCCAGATGAGACAGCTTTGCTGGAAGCCAGA--CTgccggatgaggtggctca--tgcctgtaatc----------ccagcactctgggaagccaaggtgg---------gcaga-cactttgagctcaggagttggacaccag-------------------ccttggtaac-----------------------------------------atggcaaaaccttgtctctacaaaaaatacaaaaaattagccgggtgtggtggggcacacctgtagttccagctactagggaagctgaggttggaggatca i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37594910 266 + 132586672 AATAGATAAGGGCATTCCAGAGGAGTACCCATTTTTCCAGATGAGACAGCTTTGCTGGAAGCCAGA--CTgccggatgaggtggctca--tgcctgtaatc----------ccagcactctgggaagccaaggtgg---------gcaga-cactttgagctcaggagttggacaccag-------------------ccttggtaac-----------------------------------------atggcaaaaccttgtctctacaaaaaatacaaaaaattagccgggtgtggtggtgcacacctgtagttccagctactagggaagctgaggttggaggatca i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11252305 264 + 104110932 AATAGATAAGGGCATTCCAGAGGAGTACCC-TTTTTCCAGATGAGACAGCTTTGCTGGAAGCCAGA--CTGCcggatgaggtggctca--tgcctgtaatc----------ccagcactctgggaagccaaggtgg---------gcaga-cactttgagctcaggagttggacaccag-------------------ccttggtaac-----------------------------------------atggcaaaaccttgtctctacaaaaaatac-aaaaattagccgggtgtggtggtgcacacctgtagttccagctactagggaagctgaggttggaggatca i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34346819 266 + 128595539 AATAGATAAGGGCATTCCAGAGGAGTACCCATTTTTCCAGATGAGACAGCTTTGCTGGAAGCCAGA--CTgctggatgaggtggctca--tgcctgtaatc----------ccagcactctgggaagccaaggtgg---------gcaga-cactttgagctcaggagttggacaccag-------------------ccttggtaac-----------------------------------------agggcaaaaccttgtctctacaaaaaatacaaaaaattagccgggtgtggtggtgcacacctgtagttccagctactagggaagctgaggttggaggatca i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87834009 265 - 158406734 AATAGATAAGGGCATTCCAGAGGAGTACCCATTTTCCCAGATGAGGGAGCTTTGCTGGAAGCCAGA--CTgctagatgtggtggctca--tacctgtaatc----------ccagcacttcgggaggccaagg-gg---------gccgatcactttgagctcagggtttggagacctg-------------------cattggcaac-----------------------------------------acggcaaaacctcatctgtacaaaaaatacaaaaagttagccaggcgtggaggtacacacctgtagttccagttactagggagg-tgaggttggaagatca i calJac3.chr6 C 0 C 0 s canFam3.chr19 50597291 331 + 53741614 AGCACACGAGTGCCTCCCAGGGGAATCCCCATTTTCCCAGGTAAGAGAGCTTTGCCAGAGGCCAGATGTTTCCAAATTCAACTTTTCACTTGCTTTCAATAGAATGGAAGGTCAGGGATCAGGTGCGCAAAGGAGGATTCATAATGTAAAGTGCTTTGTGGCCTGGGGTTAG-TGCCAGAGTTCACATGGCTTCTTCCTTTTGGTGACTCAAATGGTGGCTTGAAAGGCAACCTGTCAGAGAGGCACTAACGGTGAACCCCC-------CGAAGGATAAAGAAGAT---CTCATTGAGGAAA-ACACAGCAGATCTTCCAGGTGTCAGGCGGGTT-------TAGAACCA i canFam3.chr19 C 0 I 115 e mm10.chr2 49686327 1169 + 182113224 I a score=80218.000000 s hg38.chr2_GL582966v2_alt 2130 32 + 96131 cttgagcctgggaagtggaggttgcagtca--gc s panTro4.chr2B 153123543 32 + 247518478 cttgagcctgggaagtggaggttgcagtca--gc i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38326558 32 + 135000294 cttgagcctgggaagtggaggttgcagtca--gc i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82277666 32 - 85365473 cttgagcctgggaagtggaggttgcagtca--gc i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11890990 30 + 106825570 cttgagcctgagaagtggaggttgcagtca---- i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37595176 30 + 132586672 cttgagcctgagaagtggaggttgcagtca---- i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11252569 32 + 104110932 ctggagcctcagaagtggaggttgcagtcagc-- i papAnu2.chr12 C 0 I 792 s chlSab2.chr10 34347085 30 + 128595539 cttgagcctgagaagtggaggttgcagtca---- i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87834274 27 - 158406734 cttgagcctgggaagtggaggttgcag------- i calJac3.chr6 C 0 C 0 e canFam3.chr19 50597622 115 + 53741614 I e mm10.chr2 49686327 1169 + 182113224 I a score=94397.000000 s hg38.chr2_GL582966v2_alt 2162 74 + 96131 taagactgcaccactgcactgcagcctgggcaacagagtgagaccttgtctcaaaaaacaaaaacaaacaaaca s panTro4.chr2B 153123575 74 + 247518478 taagactgcaccactgcactgcagcctgggcaacagagtgagaccttgtctcaaaaaacaaaaacaaacaaaca i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38326590 70 + 135000294 caagactgcaccactgcactccagcctgggcaacagagtgagaccttgtctc----aacaaaaacaaacaaaca i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82277698 73 - 85365473 caagactgcatcactgcactccagcctgggcaacagagtgagactttgtctcaaaaaacaaaaacaaacaaac- i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11891020 45 + 106825570 ---------------gcgcttcagcctgggcaacagagtgagaccttgtctaaag--------------aaaaa i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37595206 45 + 132586672 ---------------gcgcttcagcctgggcaacagagtgagaccttgtctaaag--------------aaaaa i macFas5.chr12 C 0 C 0 s chlSab2.chr10 34347115 48 + 128595539 ---------------gcacttcagcctgggcaacagagtgagaccttgtctaaagaaa-----------aaaaa i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87834301 59 - 158406734 ------tgtaccactgcactccagcctgggcaacagagtgagaccttgtctcaaaaaaaa---------aaaaa i calJac3.chr6 C 0 C 0 e canFam3.chr19 50597622 115 + 53741614 I e mm10.chr2 49686327 1169 + 182113224 I e papAnu2.chr12 11252601 792 + 104110932 I a score=31980.000000 s hg38.chr2_GL582966v2_alt 2236 15 + 96131 aaaaaTCTGGAAAA-T s panTro4.chr2B 153123649 15 + 247518478 aaaaaTCTGGAAAA-T i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38326660 15 + 135000294 aaaaaTCTGGAAAA-T i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82277771 16 - 85365473 aaaaaTCTGGAAAATT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11891065 16 + 106825570 aaaaaTCTGGAAAATT i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37595251 16 + 132586672 aaaaaTCTGGAAAATT i macFas5.chr12 C 0 C 0 s chlSab2.chr10 34347163 16 + 128595539 aaaaaTCTGGAAAATT i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87834360 16 - 158406734 aaaaaCCTTGATAATT i calJac3.chr6 C 0 C 0 s mm10.chr2 49687496 13 + 182113224 AAAAGTCT--AAAA-T i mm10.chr2 I 1169 C 0 e canFam3.chr19 50597622 115 + 53741614 I e papAnu2.chr12 11252601 792 + 104110932 I a score=1341696.000000 s hg38.chr2_GL582966v2_alt 2251 499 + 96131 CTCTGGATGTGTTGTTGGCACTGATCACTTTAAACCTGCAGACTGTGTGTTTGTTCACTGATGGATTGTTGAACACATATGAGA--ACTTAAGTGCTTATTTGACGGTGGGCTTAGGCAAAGGCTCTCTGG-----AGCTTGTGTGttgctttcaatacttctggaagtcttcattaggagttgctg-----------------------------------------tcagatcc-taaggc--atcttttctaaaatcttcaggggtggc-----aaattctggaccttaaaaatggatttggtAATA---TCCAAATAGCAGAAGAATTTACCTATCCCTATCCCCACCCACTTAGGTGAA---------------------------------------------ATGAGTAAAGTA--------------------GAAAAGCGGGGAAAGAAGAATATAAGACGATCTTAAACATGGATTTAGGTATTAGAAACAGCTAAAAAT---------------------------TATTTGGAACAATTTGGCCTGGGAACCACAGATTTTTAAAAGAAGTTGATGAAATGTATTTTCTTGATTGATCTGTTAAATGATACTGAAAGTGTTGCC----AGAATAAGGTTCTT s panTro4.chr2B 153123664 499 + 247518478 CTCTGGATGTGTTGTTGGCACTGATCACTTTAAACCTGCAGACTGTGTGTTTGTTCACTGATGGATTGTTGAACACATATGAGA--ACTTAAGTGCTTATTTGACGGTGGGCTTAGGCAAAGGCTCTCTGG-----AGCTTGTGTGttgctttcaatacttctggaagtcttcattaggagttgctg-----------------------------------------tcagatcc-taaggc--atcttttctaaaatcttcaggggtggc-----aaattctggaccttaaaaatggatttggtAATA---TCAAAATAGCAGAAGAATTTACCTATCCCTATCCCCACCCACTTAGGTGAA---------------------------------------------ATGAGTAAAGTA--------------------GAAAAGCGGGGTAAGAAGAATATAAGACGATCTTAAACATGGATTTAGGTGTTAGAAACAGCTAAAAAT---------------------------TATTTGGAACAATTTGGCCTGGGAACCACAGATTTTTAAAAGAAGTTGATGAAATGTATTTTCTTGATTGATCTGTTAAATGATACTGAAAGTGTTGCC----AGAATAAGGTTCTT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38326675 499 + 135000294 ATCTGGATGTACTGTTGGCACTGATCACTTTAAACCTGCAGACTGTGTGTTTGCTCACTGATGGGTTGTTGAACACATATGAGA--ACTCAAGTGCTTATTTGACGGTGGGCTTAGGCAAAGGCTCTCTGG-----AGCTTGTGTGttgctttaaatacttctggaagtcttcattaggagttgctg-----------------------------------------tcagatcc-taaggc--atcttttctaaaatcttcaggggtggc-----aaattctggaccttaaaaatggatttggtAATA---TCCAAATAGCAGAAGAATTTACCTATCCCTATCCCCACCCACTTAGGTGAA---------------------------------------------ATGAGTAAAGTA--------------------GAAAAGCGGGGAAAGAAGAATATAAGACTATCTTAAATGTGGATTTAGGTGTTAGAAACGGCTAAAAAT---------------------------TATTTGGAACAATTCGGCCTGGGAACCACAGATTTTTAAAAGAAGTTGATGAAATGTATTTTCTTGATTGATCTGTTAAATGATACTGAATGTGTTGCC----AGAATAAGGTTCTT i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82277787 498 - 85365473 CTCTGGATGTACTGTGGGCACCAATCACTTTAAACCTTCAGACTGTGTGTTTGTTCACTGATGGGTTGTTGAACACATATGAGA--ACTTAAGTGCTTATTTGACGGTGGGCTTAGGCAAAGGCTCTCTGG-----AGCTTGTGTGttgctttaaatacttctggaagtcttcattaggagttgctg-----------------------------------------tcagatcc-taaggc--atcttttctaaaatcttcaggggtggc-----aaattctggaccttaaaaatggatttggtAATA---TCCAAATAGCAGAAGAATTTACCTATCCCTATCCCCACCCACTTAGGTGAA---------------------------------------------ATGAGTAAAGTA--------------------GAAAAGCGGGGAAAGAAGAATATAAGACTATCTTAAACGTGGATTTAGGTGTTAGAAACAGCTAAAAAT---------------------------TATTTGGAACAATTCGGCCT-GGAACCACAGATTTTTAAAAGAAGTTGATGAAATGTATTTTCTTGATTGATCTGTTAAATGATACTGAAAGTGTTGCT----AGAATAAGGTTCTT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11891081 493 + 106825570 CTCTGGGTGTACGGTTGGCACTGATCACTTTAAACCTGCAGACCGTGTGTTTGTTCACTGATGGGTTGTTGAACTCATATGAGA--ACTTAAATGCTTATTTGATGGTGGGCTTAGGCAAAGGCTCTCTGG-----AGCTTGTGTGttgctttaaatgcttctggaagtcttcattaggagttgctg-----------------------------------------tcagatcc-tatggc--atcttttctaaaatcttcagaggtggc-----aaattctggaccttagaagtggatttggtAATA---TCCAAATAGCAGGATAATTTACCTGTCCCCATCCC------CTTAAGTAAA---------------------------------------------ATGAGTAAAGTA--------------------GAAAAGGGGGGAAAGAAGAATATAAGACTATCTTAAACGTGGATTTAGGTGTTAGAAACAGCTAAAACT---------------------------TATTTAGAACAATTCAGCCTGGGGACTACAGATTTTTAAAAGAAATTTATGAAGTGTATTTTCTTGATTGATCTGTTAAATGATACTGAAAGTGTTGCC----AGAATAAGGTTCTT i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37595267 493 + 132586672 CTCTGGGTGTACGGTTGGCACTGATCACTTTAAACCTGCAGACCGTGTGTTTGTTCACTGATGGGTTGTTGAACTCATATGAGA--ACTTAAATGCTTATTTGATGGTGGGCTTAGGCAAAGGCTCTCTGG-----AGCTTGTGTGttgctttaaatgcttctggaagtcttcattaggagttgctg-----------------------------------------tcagatcc-tatggc--atcttttctaaaatcttcagaggtggc-----aaattctggaccttagaagtggatttggtAATA---TCCAAATAGCAGGATAATTTACCTGTCCCCATCCC------CTTAGGTAAA---------------------------------------------ATGAGTAAAGTA--------------------GAAAAGGGGGGAAAGAAGAATATAAGACTATCTTAAACGTGGATTTAGGTGTTAGAAACAGCTAAAACT---------------------------TATTTAGAACAATTCAGCCTGGGGACTACAGATTTTTAAAAGAAATTGATGAAGTGTATTTTCTTGATTGATCTGTTAAATGATACTGAAAGTGTTGCC----AGAATAAGGTTCTT i macFas5.chr12 C 0 C 0 s chlSab2.chr10 34347179 493 + 128595539 CTCTGGGTGTACTGTTGGCACTGATCACTTTAAACCTGCAGACCGTGTGTTTGTTCACTGATGGGTTGTTGAACTCATATGAGA--ACTTAAGTGCTTATTTGATGGTGGGCTTAGGCAAAGGCTCTCTGG-----AGCTTGTGTGttgctttaaatgcttctggaagtcttcattaggagttgctg-----------------------------------------tcagatcc-tatggc--atcttttctaaaatcttcagaggtggc-----aaattctggaccttagaagtagatttggtAATA---TCCAAATAGCAGGATAATTTACCTGTCCCCATCCC------CTTAGGTAAA---------------------------------------------ATGAGTAAAGTA--------------------GAAAAGGGGGGAAAGAAGAATATAAGACTATTTTAAACATGGATTTAGGTGTTAGAAACAGCTAAAACT---------------------------TATTTAGAACAATTCAGCCTGGGGACTACAGATTTTTAAAAGAAATTGATGAAGCGTATTTTCTTGATTGATCTGTTAAATGATACTGAAAGTGTTGCC----AGAATAAGGTTCTT i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87834376 493 - 158406734 CTCTGGGTGTACTGTTGGCACTGATCACTTTAAACCTTCATACTGTGTGTTTGTTCACTGATGGGTTGTTTAACACATATGAGA--ACTTAAGTGCTTATTTGACGGTGGGTTTATGCAGAGACTCTCTGG-----AGCTTGTGTGttgctttaaatacttctagaagtcttcattagcagttgctg-----------------------------------------tcagatccttatggc--atcttttctaaagtcttcagaggtggc-----aaattctagactttaaaaatggatttAGTATTA---TCCACATAGCAGAATAATTTATCTGTCCCCACCCC------CTTAGGTAAA---------------------------------------------ATGAGTAAAGTA--------------------GAAAAG-AGGGAAAGAAGAATATGAGACTATCTTAAAAGTAGATTTAGGTGTTAGAAACAGCTAAAAAT---------------------------TATTTGGAACAATTCAGACTGGTAAATACAGATTTTTAAAAGCAATTGATAAAATGTGTTTTCTTGATTGATCTGTTAAATGATActgaaagtatcacc----agaataaggttcct i calJac3.chr6 C 0 C 0 s mm10.chr2 49687509 521 + 182113224 CTTCAGGTACACC----------ATCACTGTAGATCTCCAGGCTATGTTTGTG---GCAGATAGGTTGTTTAACACTTGGGAGAGGACTTGAGTAGTCATTTCACTGGTAGATTAAGAGAAGATTCTATGGTATACAACCTAGCCATGGCTTTAAGTACATC-AGATCCCTTTAGTGGGAATTGTTGGATATTGTCTCTTCCGTTCCCTCCCACAGGGCATCAACATATCAATACT-CATGGC--ATCTCTT-GACAGCCCTCATAGGTGGAAAAAGAAATTCTAGGCA-TAAAAGTATATTTAGTAATG---TTCAAAAAGAG--------TATTTATCCCTCCACCTGTTTGCTAAAATCAA---------------------------------------------ATAAG---AGT-----------------------------GGGAAAAAGGAATATAAGAATGCCCTTCAAGTCAATTTAAATACTAAAAGGAGTAAAAAAC--------------------------ATATTTAGAACAATTCAGTTGGAGAATTCTAGATTTCAAAATGAGAACACTGGGATGGATTTTCTTGGCCGGTCTGTAAAATGCTCCTGAAGAGGGTATTTTTGAGGGTAAGGGCTTT i mm10.chr2 C 0 C 0 s canFam3.chr19 50597737 556 + 53741614 CTCTGGGAATACTCTTGCCCGTGATTACTTTAGACCTATAGACTGTGTG------CCCTCATGGGTAGTTGAACATGGAACAGA---------------------GAAGAGCTTGG--AAGTCCTTGCTAA-----GAC-----TGCtactctaaatacctctagaactctgatttaggaactgctt-----------------------------------------tcagatac-tatggcatatctttttgaaagtcttcagaaacggc-----aaatctggttctttaaaaatggatttAGTAAAATAGTTCAAATCACAGAAGAATTCATCTGTTCCTTCACCC-----CTTAGATGAACTATCCCTCAAGCCCCCTTAGGATTGGAGGAGGATTGCTGGTTGCATGGGGAAGGGAGGGCTGGACCTCTCTGGTAGGAAAAAGGGGGATAAAAGAACAAGACACTATCTTACAAGTGGATTTAAATATTAGAAATAGCAAAAAATTTAAAACAAAAGAAACAGCTAAAAATTTATTTGTAACGTTACAGGCTGGGAAGTAGAAATTTTTAA--GAAATTGGTAAAATGGCTTTTCTTGATTGGTTTGTCAAGTGATACTG-AGGTGTTTGT----GGAATAAGATTGTT i canFam3.chr19 I 115 C 0 e papAnu2.chr12 11252601 792 + 104110932 I a score=548870.000000 s hg38.chr2_GL582966v2_alt 2750 174 + 96131 AGA-AATTTTGGA------------------AAATTTTGGAA---------------ATCAGTTCTAGAGGTGATTTCATTAAACAAGATTGCCTTACTTGGAACTCCAGGCTCAGGTCAGTTTGTAAATACT-----CAAAACCCAAACC----------------------CATATATTCTCGTtccttctcctgctccc------ttttcctcctcctcc----------------------------tcACCC-CACACTAGCCAC- s panTro4.chr2B 153124163 174 + 247518478 AGA-AATTTTGGA------------------AAATTTTGGAA---------------ATCAGTTCTAGAGGTGATTTCATTAAACAAGATTGCCTTACTTGGAACTCCAGGCTCAGGTCAGTTTGTAAATACT-----CAAAACCCAAACC----------------------TATATATTCTCATTCCTTCTCCTGCTCCC------TTTTCCTCCTCCTCC----------------------------TCACCC-CACACTAGCCAC- i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38327174 174 + 135000294 AGA-AATTTTGGA------------------AAATTTTGGAA---------------ATCAGTTCTAGAGGTGATTTCATTAAACAAGATTGCCTTACTTGGACCTCCAGGCTCAGGTCAGTTTGTAAATACT-----CAAAACCCAAACC----------------------CATATATTCTCGTTCCTTCTCCTGCTCCC------TTTTCCTCCTCCTCC----------------------------TCACTC-CACACTAGCCAC- i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82278285 174 - 85365473 AGA-AATTTTGGA------------------AAATTTTGGAA---------------ATCAGTGCTAGAGGTGATTTCATTAAACGAGATTGCCTTACTTGGACCTCCAGGCTCAGGTCAGTTTGTAAATACT-----CAAAAACCAAATC----------------------CATATATTCTCGTtccttctcctgccccc------ttttcctcctcctcc----------------------------tcACCC-CACACTAGCCAC- i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11891574 174 + 106825570 AGA-AATTTTGAA------------------AAATTTTGGAA---------------ATCAGTTCTAAAGGTTATTTCATTAAAGGACATTACCTTACTTGGACCTGGAGGCTCAAGTCAGTTTGTAAATACT-----CAAAACCCAAACC----------------------CATATATTCTCATTCCTTCTCCTGCTCCC------TTTCCCTTCTCCTCC----------------------------TCACCC-CACACTAGCCAC- i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37595760 174 + 132586672 AGA-AATTTTGAA------------------AAATTTTGGAA---------------ATCAGTTCTAAAGGTTATTTCATTAAAGGACATTACCTTACTTGGACCTGCAGGCTCAAGTCAGTTTGTAAATACT-----CAAAACCCAAACC----------------------CATATATTCTCATtccttctcctgctccc------tttcccttctcctcc----------------------------tcACCC-CACACTAGCCAC- i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11253393 174 + 104110932 aga-aattttgaa------------------aaattttggaa---------------ATCAGTTCTAAAGGTTGTTTCATTAAAGGACATTACCTTACTTGGACCTGCAGGCTCTGGTCAGTTTGTAAATACT-----CAAAACCCAAACC----------------------CATATATTCTCATTCCTTCTCCTgctccc------tttcccttctcctcc----------------------------tcaccC-CACACTAGCCAC- i papAnu2.chr12 I 792 C 0 s chlSab2.chr10 34347672 174 + 128595539 AGA-AATTTTGAA------------------AAATTTTGGAA---------------ATCAGTTCTAAAGGTTATTTCATTAAAGAACATTACCTTACTTGGACCTGCAGGCTCAGGTCAGTTTGTAAATACT-----CAAAACCCAAACC----------------------CATATATTCTCATtccttctcctgctccc------tttcccttctcctcc----------------------------tcACCC-CACACTAGCCAC- i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87834869 192 - 158406734 aga-aattttggagcaatgatgacattaatgagatgatgtct---------------atcaggtctgaaggtgatttcattaaaggagattactttacttggacctgcaggcccgggtcagtttgtAAATACT-----CAAAACCCAAACC----------------------CATATATTCTCATTCCGTCTCCTTCTCCC------TTTCCCTCCTCCTCC----------------------------TCACAC-CACACTAACCAC- i calJac3.chr6 C 0 C 0 s mm10.chr2 49688030 212 + 182113224 AGACAATCTTGGA------------------CAATGGTTGGA------------TCTATCCATTCTCCAGCAGATCAGATT---TGGGATTAGCTGATCTGGACTGGC--TTTCTGGCCAATCTCTAACTCCTGCAGGTTAAACTAAAGCG----------------------TGCCTGTTCACCTCCCACCTTCTTCTTTCCCACAGTTTCACTGCTTCTCTGTGTGGATTCACACAGGAGGGGAGATGGCCTCCC-CACTCCAACCAG- i mm10.chr2 C 0 I 226 s canFam3.chr19 50598293 207 + 53741614 AAA-AATTTTGAG------------------CAATGATGACATTAATGAAACTGTCTATCAGCTCTCAAGGTGGTTTTATTACAGCAGATTA----ATTTGGATTTATATATTCTGATCAGTTTGTAAAT--T-----CAAAACAGAGACCACATTTAGTATGTGACAGTCATCATATAATTCCAGTCCTCCTCCTGCCTTC------CTTCCCTCCTGCTTT----------------------------CTACCCACATCCTTACCCCC i canFam3.chr19 C 0 C 0 a score=328551.000000 s hg38.chr2_GL582966v2_alt 2924 108 + 96131 ATAGACTCTGATTTTGTTTCCTTGAGTGGCAGCTGGAGGCAATAATGTGGGGCCTCAGAACTTGGCAGAACAAGTGCTCCCCTGCTGGATAAACAGGCCAACACAATG s panTro4.chr2B 153124337 108 + 247518478 ATAGACTCTGATTTTGTTTCCTTGAGTGGCAGCTGGAGGCAATACTGTGGGGCCTCAGAACTTGGCAGAACAAGTGCTCCCCTGCTGGATAAACAGACCAACACACTG i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38327348 108 + 135000294 ATAGACACTGATTTTGTTTCCTTGAGTGGCAGCTGGAGGCAATACTGTGGGGCCTCAGAACTTGGCAGAAAAAGTGCTCTCCTGCTGGATGAACAGACCAACGCATTC i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82278459 108 - 85365473 ATAGACACTGATTTTGTTGCCATGAGTGGCAGCTGGAGGCAATACTGTGGGGCCTCAGAACTTGGCAGAACAAGTGCTCCCCTGCTGGATAAACAGACCAACACATTG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11891748 106 + 106825570 ATAGACACTGA-TTTGCTGCCTTGAGTGGCCGCTGGAGGCAATACTGT-GGGCCTCAGAATTTAACAGCACAAGTGCTCCCCTGCTGGATAAACAGATGAACACATTG i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37595934 106 + 132586672 ATAGACACTGA-TTTGCTGCCTTGAGTGGCCGCTGGAGGCAATACTGT-GGGCCTCAGAATTTAACAGCACAAGTGCTCCCCTGCTGGATAAACAGATGAACACATTG i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11253567 106 + 104110932 ATAGACACTGA-TTTGCTGCCTTGAGTGGCCACTGGAGGCAATACTGT-GGGCCTCAGAATTTAACAGCACAAGTGCTCCCCTGCTGGATAAACAGATGAACACATTG i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34347846 106 + 128595539 ATAGACACTGA-TTTGCTGTCTTGAGTGGCCGCTGGAGGCAATACTGT-GGGCCTCAGAATTTAACAGCACAAGTGCTCCCCTGCTGGATAAACAGATGAACACATTG i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87835061 107 - 158406734 ATAGACTCTGA-TTTGCTGCTTTGAGTGGCAGCTGGAGGCAATACTGTGGGACCTCAGAACTTGGCAGAACAAGCGTTTTCCTGCTGGATAAACAGACAAACACACTG i calJac3.chr6 C 0 C 0 s canFam3.chr19 50598500 103 + 53741614 --GTATACCGA-TTTGCTGACCTGAGTGGCAGCAGGAGCAAATATTTCAGAGCTCCAGAACCTCACAGAATAAGCTCTCTCCTGCTCGGTAAAAAA--CAACACATTG i canFam3.chr19 C 0 C 0 e mm10.chr2 49688242 226 + 182113224 I a score=4107545.000000 s hg38.chr2_GL582966v2_alt 3032 1159 + 96131 AGTT-TTTCC-ACCAAC--TTCTGG-----TCTGTTGGCAAGTCAGGTAGATGCCCAAGGGAGCTGGCAGGCACACGTG-----GGTGCTTCCTGCTCCACCGGGTTCTGTCTGAGGAACCCAGAGATGGTTCTCCCTCT----CTCTCATGTGTCTCCCAGCATGCTTTAACTG-CCCGTGTTTGTA-TTTTCGCCCACTAGGGGAAGCTGCATGACCCCCAGCTCATGGGGATCATCCCACGAATTGCCCATGATATCTTTGACCATATCTACTCCATGGATGAGAACCTGGAGTTTCACATAAAGGTACGTATTACTGATT--GGTCCCCAGAGAAGACACTGGGCCCCAGATAACGTTTCTTATACCTCCTCCT----TTCAAGAAGATATAAAAGATGATCC-------TACTAATTTAAATGACATTCTTGTGGTAAGCAGAGCCCTCTTTATTAGTGACCTAGGCTAACAGGTGTCTGGAGGGTTTGCTTGAAATATCCACATAATGAAAGCAAAAGCCTTCTTTAGGAGGAAATCATCTTGATTGTTGCCCAAATTCTACCCTTTATCCTCTGGATTTCTGTGGGTATGACTGAAATGTGTTTGTGTTTGGGTTAGGGcagcattttccaaagtgtgttctgtggaacacagtcccttgtgttattaat-ggtgggctagcagggaaaagggctg-taaggccaaatgagctgggaaaatgctttcttgaacagtgttaagtttatcacaggtttcAATATGCTCT----------------GCAAAGGGGACATGCATTAGATTACATTTCCCAGCTTATTTGAATGTAGACACATTTCTCCTCCTAAGA-GTATCACAGACTTGTGTTTTGAGCAGAGTGTCACAGAGCAGAACTCTGAGAAATGTTGGGAAGAGGAATTCTCTTCCTTTTTATCTTCCCCC----------TTGTATTTTGTTTTTGTTTTAAACCAAAACTTGTTATATGACTT-AAATTGGCATTAAAAGAGAGATTTCTACTCTCTTA----CTGTAGCTGTTAAATAATCAAATTTGATAGTAGGG-TATATTCATTGGAACACCTCT-TTTGCAAGTGGCTGAAAGGCACTTGTTTAAGCAAATAGAGGATATTGTTTATAAGATACAGAATCTGACAGTGGGCATTTTG--TGGAGGATGAAGTGTGGAGGGCAGGAAATCTAAGCCCTG-------TTT s panTro4.chr2B 153124445 1158 + 247518478 AGTT-TTTCC-ACCAAC--TTCTGG-----TCTGTTGGCAAGTCAGGTAGATGCCCAAGGGAGCTGGCAGGCACATGTG-----GGTGCTTCCTGCTCCACCGGGTTCTGTCTGAGGAACCCAGAGATGGTTCTCCCTCT----CTCTCATGTGTCTCCCAGCATACTTTAACTG-CCCGTGTTTGTA-TTTTCACCCACTAGGGGAAGCTGCACGACCCCCAGCTCATGGGGATCATCCCACGAATTGCCCATGATATCTTTGACCATATCTACTCCATGGATGAGAACCTGGAGTTTCACATAAAGGTACGTATTACTGATT--GGTCCCCAGAGAAGACACTGGGCCCCAGATAACGTTTCTTATACCTCCTCCT----TTCAAGAAGATATAAAAGATGATCC-------TACTAATTTAAATGACATTCTTGTGGTAAGCAGAGCCCTCTTTATTAGTGACCTAGGCTAACAGGTGTCTGGAGGGTTTGCTTGAAATATCCACATAATGAAAGCAAAAGCCTTCTTTAGGTGGAAATCATCTTGATTGTTGCCCAAATTCTACCCTTTATCCTCTGGATTTCTGTGGGTATGACTGAAATGTGTTTGTGTTTGGGTTAGGGcagcattttccaaagtgtgttctgtggaacacagtcccttgtgttattaat-ggtgggctagcagggaaaagggctg-taaggccaaatgagctgggaaaatgctttcttgaacagtgttaagtttatcacaggtttcAGTATGCTCT----------------GCAAAGGGGACATGCATTAGATTACATTTCCCAGCTTATTTGAATGTAGACACATTTCTCCTCCTAAGA-GTATCACAGACTTGTGTTTTGAGCAGAGTGTCACAGAGCAGAACTCTGAGAAATGTTGGGAAGAGGAATTCTCTTCCTTTTTATCTTCCCCC----------TTGTATTTTGTTTTTGTTTTAAACCAAAACTTGTTGTATGACTT-AAATTTGCATTAAAAGAGAGATTTCTACTCTCTTA----CTGTAGCTGTTAAATAATCAAATTTGGTATTAGGG-TATATTCATTGGAACACCTCT-TTTGCAAGTGGCTGAAAGGCACTTGTTTAAGCAAATAGAGGATATTGTT-ATAAGATACAGAATCTGACAGTGGGCATTTTG--TGGAGGAGGAAGTGTGGAGGGCAGGAAATCTAAGCCCTG-------TTT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38327456 1167 + 135000294 AGTT-TTTCC-ACCAAC--TTCTGG-----TCTGTTGGCAAGTCAGGTAGATGCCCAAGGGAGCTAGCAGGCACACGTG-----GGTGCTTCCTGCTCCACCGGGTTCTGTCTGAGGAACCCAGAGATGGGTCCCCCTCT----CTCTCATGTGTCTCCCAGCATGCTTTAACTG-CCCGTGTTTGTA-TTTTCACCCACTAGGGGAAGCTGCACGACCCCCAGCTCATGGGGATCATCCCACGAATTGCCCATGATATCTTTGACCATATCTACTCGATGGATGAGAACCTGGAGTTTCACATAAAGGTACGTATTACTGATT--GGTCCCCAGAGAAGACATTGGGCCCCAGATAATGTTTCTTATACTTCTTCCT----TTCAAGTAGATATAAAAGATGATCT-------TACTAATTTAAATGATATTCTTGTGGTAAGCAGAGCCCTCTTTATTAGTGACCTAGGCTAACAGGTATCTGGAGGGTTTGCTTGAAATATCCACATTATGAAAGCAAAAGCCTTCTTTAGGAGGAAATCATCTTGATTGTTGCCCAAATTTTACCCTTTATCCTCTGGATTTCTGTGGGTATGACTGAAATGTGTTTGTGTTTGGGTTAGGGcagcatttcccaaagtgtgttctgtggaacacAGTCCCTTGTGTTATTAAT-GGTGGGCTGGCAGGGAAAAGGGCTA-TAAGGCCAAATGAGCTGGGAAAATGCTTTCTTGAACAATGTTAAGTTTATCACGAGTTTCAATATGCTCT----------------GCAAAGGGGACATGCATTAGATTACATTTCCCAGCTTATTTGAATGTAGACACATTTCTCCCCCTAAGA-GTATCACAGACTTGTGTTTTGAGCAGAGTGTCACAGAGCAGAACTCTGAGAAATGTTGGGAAGAGGATTTCTCTTCCTTTTTATCTTCCCCCTTGTATTTTGTTGTATTTTGTTTTTGTTTTAAACCAAAACTTGTTATATGACTT-AAATTTGCATTAAAAGAGAGGTTTCTACTCTCTTA----CTGTAGCTGTTAAATTATCAAATTTGGTATTAGGG-TATATTCATTGGAACACCTCT-TGTGCAAGTGGCTGAAAGGCACTTGTTTAAGCAAGTAGAGGATATTGTT-ATAAGATACAGAATCTGACAGTGGGCATTTTG--TGGAGGATGCAGTGTGGAGGG-AGGAAATCTAAGCCCGG-------TTT i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82278567 1158 - 85365473 AGTT-TTTCC-ACCAAC--TTCTGG-----TCTGTTGGCAAGTCAGGTAGATGCCCAAGGGAGCCGGCAGGCACAGGTG-----GGTGCTTCCTGCTCCACCGGGTTCTGTCTAAGGAACCCAGAGATGGTTCCCTCTCT----CTCTCATGTGTCTCCCAGCACGCTTTAACTG-CCCATGTTTGTA-TTTTCACCCACTAGGGGAAGCTGCACGACCCCCAGCTCATGGGGATCATCCCACGAATTGCCCATGATATCTTTGACCATATCTACTCCATGGATGAGAACCTGGAGTTTCACATAAAGGTATGTATTACTGATT--GGTCCCCAGAGAAGACACTGGGCCCCAGATAATGTTTCTTATACCTCCTCAT----TTCAAGTAGATATAAAAGATGATCT-------TACTAATTTAAATGACATTCTTGTGCTAAGCAGAGCCCTCTTTATTAGTGACCTAGGCTAACAGGTATCTGGAGGGTTTGCTTGAAATATCCACATAATGAAAGCAAAAGCCTTCTTTAGGAGGAGATCATCTTGATTGTTGCCCAAATTCTACCCTTTATCCTCTGGATTTCTGTGGGTATGACTGAAA------TGTGTTTGGGTTAGGGcagcatttcccaaagtgtgttctgtggaacacattcccttgtgttattaat-ggtgggcttgcagggaaaagcactgttaaggccaaatgagctgggaaaatgctttcttgaacaatgttaagtttatcacaagtttcAATATACTCT----------------GCAAAGGGGACATGCATTAGATTACATTTCCCAGCTTATTTGAATGTAGACACATTTCTCCCCCTAAGA-GTATCACAGACTTGTGTTTTGAGC--AGTGTCACAGAGCAGAACTCTGAGAAATGTTGGGAAGAGGAATTCTCTTCCTTTTTATCTTCTCTC----------TTGTATTTTGTTTTTGTTTTAAACCAAAACTTGTTATATGAATT-AAATTTGCATTAAAAGAGAGATTTCTACTCTCTTA----CTATAGCTGTTAAATAATCAAATTTGGTATTAGGG-TATATTCATTGGAACACCCCT-TTTGCAAGTGGCTGAAAGGCACTTGTTTAAGCAAATAGAGGATATTGTT-ATAAGACACAGAATCTGACAGTGGGCATTTTG--TGGAGGATGAGGTGTGGAGGGCAGGAAATCTAAGCTCTGTTTTTCTTTT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11891854 1155 + 106825570 AGTT-TTTCC-ACCAAC--TTCTGG-----TCTGTTGGCAAGTCAGGTAGATGCCCAAGGGAGCCGGCAGGCACACGTG-----GGTGCTTCCTGCTCCACCAGGTTCTGTCTAAGGAACCCAGCAATGGTTCCTCCTCT----CTCTCCTGTGTCTCCCAGCACCCTTTAACGG-CCTGTGTTTGTA-TTTTCACCCACTAGGGGAAGCTGCACGACCCCCAGCTCATGGGGATCATCCCACGAATTGCTCATGATATCTTTGACCATATCTACTCCATGGATGAGAACCTGGAATTTCACATAAAGGTATGTATTACTGATT--GGT--CAAGAGAAGACACTGGGCCCCAGATAACGTTTCTTATCCCTCCTCCT----TTCAAATAGATATAAAAGATGATCT-------TACTAATTTAAATTACATTCTTGTGGTAAGCAGAGCCCTCTTCCTTACTGACCTAGGCTAACAGGTATCTGGAGGGTTTGCTTGAAATATCCAGATAATGAAAGCAAAAGCCTTCTTTAGCAGGAAATCATCTTGATTGTTGCCCGAATTCTACCCTTTATCCTCTGGATCTCCGTGGATATGACTGAAATGTGTTTGTGTGTGGGTTAGGGcagcatttctcaaagtgtgttctgtggaacacagtgcctcgtattattaat-ggtgggcttgcagggaaaggggcta-taaggccaaatgagctgggaaagtgcttccttgaacagtgttaaaTTTATCACAAGTTTCAACGTGCTCT----------------GCAAAGGGGACGTGTATTAGATTACATTTCCCAGCTTATTTGAATATAGACACATTTCTCCCCCTAAGA-GTATCACAGACTTGTGTTTTGAGCAGAGCGTCACAGAGCAGAAGTCTGAGAAATGTTGGGAAGAGGAATTCTCCTCCTTTTTATCTTCCTCT----------TTGTATTTTGTTTTTGTTTTAAACCAGAACTTGTTATG-GACTT-CAATTTACATTAAAAGAGAGATTTCTACTCTCTTA----CTGTAGCTGTTTAATAATAAAATGTGTTATTAGGA-TATATTCATTGGAACACCTCT-TTTGCAAGTGACTGAAAGGCACTTGTTTAAGCAAATAGAGGATATTGTT-ATAAGAGACAGAATCTGACAGTAGGCATTTTG--TGGAGGATGAAGTGTGGAGGGCAGGAAATCTAAGCCCTG-------TTT i rheMac3.chr12 C 0 I 174 s macFas5.chr12 37596040 1155 + 132586672 AGTT-TTTCC-ACCAAC--TTCTGG-----TCTGTTGGCAAGTCAGGTAGATGCCCAAGGGAGCCGGCAGGCACACGTG-----GGTGCTTCCTGCTCCACCAGGTTCTGTCTAAGGAACCCAGCAATGGTTCCTCCTCT----CTCTCCTGTGTCTCCCAGCACCCTTTAACGG-CCTGTGTTTGTA-TTTTCACCCACTAGGGGAAGCTGCACGACCCCCAGCTCATGGGGATCATCCCACGAATTGCTCATGATATCTTTGACCATATCTACTCCATGGATGAGAACCTGGAATTTCACATAAAGGTATGTATTACTGATT--GGT--CAAGAGAAGACACTGGGCCCCAGATAACGTTTCTTATCCCTCCTCCT----TTCAAATAGATATAAAAGATGATCT-------TACTAATTTAAATTACATTCTTGTGGTAAGCAGAGCCCTCTTCCTTACTGACCTAGGCTAACAGGTATCTGGAGGGTTTGCTTGAAATATCCAGATAATGAAAGCAAAAGCCTTCTTTAGCAGGAAATCATCTTGATTGTTGCCCGAATTCTACCCTTTATCCTCTGGATCTCTGTGGATATGACTGAAATGTGTTTGTGTGTGGGTTAGGGcagcatttctcaaagtgtgttctgtggaacacagtgcctcgtattattaat-ggtgggcttgcagggaaaagggcta-taaggccaaatgagctgggaaagtgcttccttgaacagtgttaaaTTTATCACAAGTTTCAACGTGCTCT----------------GCAAAGGGGACATGTATTAGATTACATTTCCCAGCTTATTTGAATATAGACACATTTCTCCCCCTAAGA-GTATCACAGACTTGTGTTTTGAGCAGAGCGTCACAGAGCAGAAGTCTGAGAAATGTTGGGAAGAGGAATTCTCCTCCtttttatcttcctct----------ttgtattttgtttttgttttAAACCAGAACTTGTTATG-GACTT-CAATTTACATTAAAAGAGAGATTTCTACTCTCTTA----CTGTAGCTGTTTAATAATAAAATTTGTTATTAGGA-TATATTCATTGGAACACCTCT-TTTGCAAGTGACTGAAAGGCACTTGTTTAAGCAAATAGAGGATATTGTT-ATAAGAGACAGAATCTGACAGTAGGCATTTTG--TGGAGGATGAAGTGTGGAGGGCAGGAAATCTAAGCCCTG-------ttt i macFas5.chr12 C 0 I 280 s papAnu2.chr12 11253673 1155 + 104110932 AGTT-TTTCC-ACCAAC--TTCTGG-----TCTGTTGGCAAGTCAGGTAGATGCCCAAGGGAGCCGGCAGGCACACGTG-----GGTGCTTCCTGCTCCACCAGGTTCTGTCTAAGGAACCCAGCAATggttcctcctct----ctctcctgtgtCTCCCAGCACCCTTTAACGG-CCTGTGTTTGTA-TTTTCACCCACTAGGGGAAGCTGCACGACCCCCAGCTCATGGGGATCATCCCACGAATTGCTCATGATATCTTTGACCATATCTACTCCATGGATGAGAACCTGGAATTTCACATAAAGGTATGTATTACTGATT--GGT--CAAGAGAAGACACTGGGCCCCAGATAACGTTTCTTATCCCTCCTCCT----TTCAAATAGATATAAAAGATGATCT-------TACTAATTTAAATTACATTCTTGTGGTAAGCAGAGCCCTCTTCCTTACTGATCTAGGCTAACAGGTATCTGGAGGGTTTGCTTGAAATATCCAGATAATGAAAGCAAAAGCCTTCTTTAGCAGGAAATCATCTTGATTGTTGCCCGAATTCTACCCTTTATCCTCTGGATCTCCGTGGATATGACtgaaatgtgtttgtgtgtgggttagggcagcatttctcaaagtgtgttctgTGGAACACAGTGCCTCGTATTATTAAT-GGTGGGCTTGCAGGGAAAAGGGCTA-TAAGGCCAAATGAGCTGGGAAAGTGCTTCCTTGAACAGTGTTAAATTTATCACAAGTTTCAACGTGCTCT----------------GCAAAGGGGACATGTATTAGATTACATTTCCCAGCTTATTTGAATATAGACACATTTCTCCCCCTAAGA-GTATCACAGACTTGTGTTTTGAGCAGAGTGTCACAGAGCAGAACTCTGAGAAATGTTGGGAAGAGGAATTCTCCTCCtttttatcttcctct----------ttgtattttgtttttgttttaaaccagAACTTGTTATG-GACTT-CAATTTGCATTAAAAGAGAGATTTCTACTCTCATA----CTGTAGctgtttaataataaaatttgttattaGGA-TATATTCATTGGAACACCTCT-TTTGCAAGTGACTGAAAGGCACTTGTTTAAGCAAATAGAGGATATTGTT-ATAAGATACAGAATCTGACAGTAGGCATTTTG--TGGAGGATGAAGTGTGGAGGGCAGGAAATCTAagccctg-------ttt i papAnu2.chr12 C 0 I 7 s chlSab2.chr10 34347952 1155 + 128595539 AGTT-TTTCC-ACCAAC--TTCTGG-----TCTGTTGGCAAGTCAGGTAGATGCCCAAGGGAGCCGGCAGGCACACGTG-----GGTGCTTCCTGCTCCACCAGGTTCTGTCTAAGGAACCCAGCAATGGTTCCTCCTCT----CTCTCCTGTGTCTCCCAGCACCCTTTAACGG-CCTGTGTTTGTA-TTTTCACTCACTAGGGGAAGCTGCACGACCCCCAGCTCATGGGGATCATCCCACGAATTGCTCATGATATCTTTGACCATATCTACTCCATGGATGAGAACCTGGAATTTCACATAAAGGTATGTATTACTGATT--GGT--CAAGAGAAGACACTGGGCCCCAGATAACATTTCTTATCCCTCCTCCT----TTCAAATAGATATAAAAGATGATCT-------TACTAATTTAAATTACATTCTTGTGGTAAGCAGAGCCCTCTTCCTTACTCACCTAGGCTAACAGGTATCTGGAGGGTTTGCTTGAAATATCCAGATAATGAAAGCAAAAGTCTTCTTTAGCAGGAAATCATCTTGATTGTTGCCCGAATTCTACCCTTTATCCTCTGGATCTCCATGGATATGACCGAAATGTGTTTGTGTGTGGGTTAGGGcagcatttctcaaagtgtgttctgtggaacacagtgcctcatattattaat-ggtgggcttgcagggaaaagggcta-taaggccaaatgagctggggaagtgcttccttgaacagtgttaaaTTTATCACAAGTTTCAACGTGCTTT----------------GCAAAGGGGACATGTATTAGATTATATTTCCCAGCTTCTTTGAATATAGACACATTTCTCCCCCTAAGA-GTATCACAGACTTGTGTTTTGAGCAGAGTGTCACAGAGCAGAACTCTGAGAAATGTTGGGAAGAGGAATTCTCCTCCtttttatcttcctct----------ttgtattttgtttttgttttAAACCAGAACTTGTTATG-GACTT-CAATTTGCATTGAAAGAGAGATTTCTACTCTCTTA----CTGTAGCTGTTTAATATTAAAATTTGTTATTAGGA-TATATTCATTGGAACACCTCT-TTTGCAAGTGACTGAAAGGCACTTGTTTAAGCAAATAGAGGATATTGTT-ATAAGATACAGAATCTGACAGTAAGCATTTTG--TGGAGGATGAAGTGTGGAGGGCAGGAAATCTAAGCCCTG-------TTT i chlSab2.chr10 C 0 I 7 s calJac3.chr6 87835168 1144 - 158406734 AGTT-ATTCC-ACCAAC--TTCTGG-----TCTGTTGGCAAGTCA-GTAGATGCCCAAGGGAGCTGGCAGACACATGTG-----GGTGCTTCCTGCTCCACCAGATTCTGTCTAAGGAACCCAGAGATGGTTCCTCCTCT----CTCTCACATGTCTCCCAGCACCCTTTAACTG-TCTGTGTTTGTA-TTTTCACCCACTAGGGGAAGCTGCATGACCCCCAGCTCATGGGGATCATCCCAAGAATTGCCCATGATATCTTTGACCATATCTACTCCATGGATGAGAACCTGGAGTTTCACATAAAGGTACGTATTACTGATT--GGTCCCCAGAGAAGACACTGGGCCCCAG-TAATGTTTCTTATCCCTCCTCCT----TTCGAGTAGATATAAAAGATGATCT-------TACTAATTTAAATGGCATTCTTGTGGTAAGCAGAGCCCTCTTTATTAGTGGCCAAGGCTAACAGTTATCTGTTGGGTTTACCTGAAATATCCAGATAATGAAAGTAAAAGCCTTCTTTAGGATGAAATCATCTTGATAGCTGCCTAAATTCTACCCTTTATCCTCTGGATTTCTGTGGATATGACTGAGA-GTGTTCATGTTCGGGTTTGGGcagcatttcccaatatgtgttctgtggaacacggactctcatattatcaat-ggtgggctagcagggaaaagggtta-taaggctgaacgagctgggaaaatgatttcttgaacaatgttaaGTTTATCACAAGTTTTAATGTGCTCT----------------GTAAAGGGGACATGTACTAGATTACATTTCCCTGCTTATTTGAATATAGACGCATTT-TCCCCCTTAGA-GTGTCACAGAC--GTGTTTGGAGCAGAGTGTCATAG---AGAACTCTGAGAAATGCTGGGAAAAGGAATTCTCCTCCTTTTTATCTTCCTCC----------TTGTATTTTGTTTTTGTTTGAAACCAGAACCTCTGATATGACTT-AAATTTGCATTACAAAAGGTATTTCTACTCTCTTA----CTCTAGCTGTTCAATAATACAATTTGGTATTAGG--TATATTCATTGGAATACCCCT-TTTGCAAGTGACTGAAAGGCACTTGTTTAAGCAAATAGAAGA---TGTT-ATAAGGTA-AGAATCTGACAGTGGACATTTTG--TGGGGGATGAAGTGTGGAGGGCAGGAAATCTAAGCCCTG-------GTT i calJac3.chr6 C 0 C 0 s mm10.chr2 49688468 1062 + 182113224 AGCC-TTCCCTACCAATCGTTCTAGAAACTTCTGTTTGTTGTGCAGGAACAAACAAAACATGACTCACACACTCAACTT-----GGAGTTTTACAGATTAAACGACATTGTTTGAAAAAGGCAGAG------CCCCGTTTGCTCCTCTCCCGTGCTTCCCAGCACTTCCTGACTGTTCTGTGT------CTTTCGCTCA-TAGGGGAAGTTACATGATCCTCAGCTTATGGGTATCATTCCAAGGATTGCACATGATATTTTTGATCACATCTATTCCATGGACGAGAACCTGGAGTTTCATATCAAGGTAAGTGCT-TTTATT--AAGAACAAGACAGGCCACTAGGCCCCAAGTCATATTACACAGTCTTTCTCCTCCTATATAAATAAATGTACAGGATGGTTC-------TTTTCA-TCAAGTGTCATTC-TGTGGGAAATAGA-CACTATTTATTAATTTCAGTCAATACCAAACATTTGGGA----TGCTTGCAGTAGGAACATAA-AAACATAGAAGCCCCCTTTAGGATGGAATCGTTATACCCATTGCCTGGATTCTCCCCTTTTCTCAATGCATTTCTGAGGATAGTCCAGGAATATGTATGTGTGGGGGTCAGGACACCGTTCCCC-ATGTGAGTTCCCTGGAACATAATCTCTTATGTTACCAATAGGGAAGCTGCCAGAGAAAAGCATTG-TATGGACAAATAAACTTGGAAAATACTTTTTTGACCAGGGCTAAACTTACCACAAGTTCAAA--TGCT--------------------------GTCATGAAT---AGTGTGGTTCTCAGA----AGGAATGCA--------------CCCTGGA-TAATGACACATTCATGTC------------------------ACCTTGGGAAGTGTTGGCA--GGCAATTCGCCTGCCTCTTTTCTCTTCCT----------CTTTGTTATTATTTTATTTTAACTCAGAAATGCTAATATTGCTT-AAACTTGAATTGAAAGAGAGACTTCTACTCTATTA----TTATTTCTGTTGAATTATAAAATTTGG-------------------------ACTTC-TTTGTAAATTCCAGAAGGCTACTTGTTTAAACAGAGAGGCA----TGTC-ATAAGGTGGCGACTGT----GTGACCA----G--TGTAGAACAGGCCATGGAGATTAGGGAATTCCAGCCCTG----GATTTT i mm10.chr2 I 226 I 3 s canFam3.chr19 50598603 1152 + 53741614 AGTTATTTCC-ATGAAC--TTTTGA-----TCTGTTGGCATATCAGGTGGACCTTCAA-GGATCAGGCAG-TGTGTGTGGAAAAGGCGCTCCCT-TTCCATGGAATTCTGT-TAGGAAATCCAGTG-TGGTCCCTCCTCT----CTGTC-CATGTCTCTTGGCACTCTTTAGCTG-CCTATACTTGTGTTTTTCACTCACTAGGGGAAGCTACATGACCCTCAACTCATGGGGATCATTCCGAGGATTGCACATGACATCTTTGACCACATCTATTCCATGGATGAAAACCTAGAGTTTCACATCAAGGTAAGTGCTATTGATTTAAGTCTAAAGAGAAGAAACTGGGTCCCAAATCATGTTTCTTAGCTTTCTTCTT----TTTATGTGTATGTAAATGATTATTTGTATCTATTTTAAATTAAATGAC------GTGGTAAGCAAAGC-CAGTTATTCAATTCCTTAGGTGAATA-----CTGAGGAAATAATTTATAAAGTT---ATATATAAAGTATAAGCCTTC--TAGGATAGAATCATTTTGATAGTTATCTGAATTCCACCTTTTACCCAGGGGATTTCTATAGATGCAGCTGGAATGTGTCCATGATTGGGTTAGGATagcgcttcccaaagtgtgttccatggaaccccgtacctctt-ttattaataagtgagctatcagggaaaaggtttg-tgtggccaaataagctgggaaaatgttttgttgaacaatgttaaattcatcacaagtt-aaatatgctatcatataatcccgtttgacgaagggcacatatagtaggttacattttccagcttatttgactgtgtacacattttcccccttttgaggtatgatagacttgtgttttgaggagtac-------------actctggcaaatgttgGGGA-AGGTGTTATCCTTCCTTGTTTTTGTTTCT----------TT---TTCTGTTT---TTTTAAGCCATAACCTCTGTTACAGCTTAAAATTTGAATTGAAAGAGAGATTTTTACTCTCTGAACTTTCTTAGCTGTTTATTTATAACATTGGGTATTAGGGTTACATTCACTGGAACTCCTTTGCTTGCAAGTGACTGAAAACCACCTGTTTAAGCAAATAGAGAACGTTGTT-ACACAACATAAAATTTGATAGTAGGCATGGGGCTTGGGGGTTGTGGT----AAAGCAAGAAATCCAGACCCTG-------CTT i canFam3.chr19 C 0 C 0 a score=1679115.000000 s hg38.chr2_GL582966v2_alt 4191 514 + 96131 -TTCT-----TTTTAAACTTTTTAAACAattgagatattgttcacataccgcaaaattcatccttttaaagtgtatagtttgatggtttttaatatattcccaaaagtgtacaatgatgatccttatcctaattcttgagca-tatcgtcacctccaaaagaaaccccaaacctgtta---cagt---ccctgcttttctgccccctTGCTTGACTTCTTTCTCTTGTTCTGGAGCATCTTTCTCTCTTTTTGGTGGGAGAAGGGGTT--GGCAACATGGCAGCTGCTGCTCCACCATtcccttatttccaactctaaattcccttgggcagggactcattggc--------------------------------------------------------------ccagcctaca-taggtgcccc--ccttgccc--------gat--gagctgtgtccaggATGCACAT-GCTGTCTGGGGGCCC-CCACTGTGGCTGGGGAGGGTG--------------AAGGGGCAGTTCTAAGAAGCCTC-GCTAAGCAGATCTGCTAAGAGATTTCCCTTCAGGCTgggatcttagtgcaccaggcccatctgttcagagatg s panTro4.chr2B 153125603 501 + 247518478 -TTCT-----TTTTAAACTTTTTAAACAattgagatattgttcacgtaccgcaaaattcatccttttaaagtgtatagtttgatggtttttaatatattcccaaaagtgtacaatgatgatccttatc-taattcttgagca-tatcatcacctccaaa------------CCTGTTA---TAGT---CCCTGCTTTTCTGGCCCCTTGCTTGACTTCTTTCTCTTGTTCTGGAGCATCTTTCTCTCTTTTTGGTGGGAGAAGGGGTT--GGCAACATGGCAGCTGCTGCTCCACCATtcccttatttccaactctaaattcccttgggcagggactcattggc--------------------------------------------------------------ccagcctaca-taggtgcccc--ccttgccc--------gat--gagctgtgtccaggATGCACAT-GCTGTCTGGGGGCCC-CCACTGTGGCTGGGGAGGGTG--------------AAGGGGCAGTTCTAAGAAGCCTC-GCTAAGCAGATCTGCTAAGAGATTTCCCTTCAGGCTgggatcttagtgcaccaggcccatctgttcagagatg i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38328623 513 + 135000294 -TTCT-----TTTTAAACATTTTAAACAattgagatattgttcacatactgcaaaattcatccttttaaagtgtatagtttgatggtttttaatatattcccgaaagtgtacaatgatgatccttatc-taattcttgagca-tatcgtcacctccaaaagaaaccccaaacctgtta---cagt---ccctgcttttctgccccctTGCTTGACTTCTTTCTCTTGTTCTGGAGCATCTTTCTCTCTTTTTGGTGGGAGAAGGGGTT--GGCAACATGGCAGCTGCTGCTCCACCATTCCCTTATTTCCAACTCTAAATTCCCTTGGGCAGGGACTCATTGGC--------------------------------------------------------------CCAACCTACA-TAGGTGCCCC--CCTTGCCT--------GAT--GAGCTGTGTCCAGGATGCACAT-GCTGTCTGGGGGCCC-CCACTGTGGCTGGGGAGGGTG--------------AAGGGGCAGTTCTAAGAAGCCTC-ACTAAGCAGATCTGCTAAGAGATTTCCCTTTAGGCTgggatcttagtgcaccaggcccatctgttcagagatg i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82279725 513 - 85365473 -TTCT-----TTTTAAACTTTTTAGACAattgagatattgttcacataccgcaaaattcatccttttaaagtgtatagtttgatggtttttaatatattcccaaaagtgtacaatgatgatccttatc-taattcttgagca-tatcgtcacctccaaaagaaaccccaaacctgtta---cagt---cgctGCTTTTCTGCCCCCTTGCTTGACTTCTTTCTCTTGTTCTGGAGCATCTTTCTCTCTTTTTGGTGGGAGAAGGGGTT--GGCAACATGGCAGCTGCTGCTCCACTATtcctttatttccaactctaaattcccttgggcagggactcattggc--------------------------------------------------------------ccagcctaca-taggtgcccc--ccttgccc--------gat--gagctgtgtccaggATGCACAT-GCTGTCTGGGGGCCC-CCACTGTGGCTGGGGAGGGTG--------------AAGGGGCAGTTCTAAGAAGCCTC-GCTAAGCAGATCTGCTAAGAGATTTCCCTTTAGGCTgggatcttagtgcaccaggcccatctgttcagagatg i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11893183 511 + 106825570 -TTCT-----TTTTAAACTTTTTAAACAattgagatattgttcacataacgcaaaattcaccctttaaaagtgtatagattgatggtttttaatatattcccaacagcgtacaatgatgatccttatc-taattcttgagca-tgtcatcacctccaaaagaaaccccaaatccgtta---cagt---ccctgcttttctgccctcTTGCTTGACTTCTTTCTCTTGTTCTGGAGCATC-TTCTCTCTTTTTGGTGGGAGAAGGGGTT--GGCAACATGGCAGCTGCTGCTCCAGCATtcccttatttccaaccccaaattcccttgcgaagggactcattggc--------------------------------------------------------------ccagcctaca-taggctcccc--cc-tgcct--------gat--gagctgtgtccaggATGCACAT-GCTGTCTGGGGGCCC-CCACTGTGGCTGGGGAGGGTG--------------AAGGGGCAGTTCTAAGAAGACTT-GCTAAGCAGATCTGCTAAGAGATTTCCCTTCAGGCTgggatcttagtgcaccaggcccatctgttcagagatg i rheMac3.chr12 I 174 C 0 s macFas5.chr12 37597475 511 + 132586672 -TTCT-----TTTTAAACTTTTTAAACAattgagatattgttcacataacgcaaaattcaccctttaaaagtgtatagattgatggtttttaatatattcccaacagcgtacaatgatgatccttatc-taattcttgagca-tgtcatcacctccaaaagaaaccccaaatccgtta---cagt---ccctgcttttctgccctcTTGCTTGACTTCTTTCTCTTGTTCTGGAGCATC-TTCTCTCTTTTTGGTGGGAGAAGGGGTT--GGCAACATGGCAGCTGCTGCTCCAGCATtcccttatttccaaccccaaattcccttgcgaagggactcattggc--------------------------------------------------------------ccagcctaca-taggctcccc--cc-tgcct--------gat--gagctgtgtccaggatgcacat-gctgtctgggggccc-ccactgtggctggggagggtg--------------aaggggcagttctaagaagactt-gctgagcagatctgctaagagatttccCTTCAGGCTgggatcttagtgcaccaggcccatctgttcagagatg i macFas5.chr12 I 280 C 0 s papAnu2.chr12 11254835 511 + 104110932 -ttct-----ttttaaactttttaaacaatTGAGATATTGTTCACATAACGCAAAATTCACCCTTTAAAAGTGTATAGATtgatggtttttaatatattcccaACAGCGTACAATGATGATCCTTATC-TAATTCTTGAGCA-TGTCATCACCTCCAGAAGAAACCCCAAATCCGTTA---TAGT---CCCTGCTTTTCTGCCCTCTTGCttgacttctttctcttgttctggagcatc-ttctctctttttggtgGGAGAAGGGGTT--GGCAACATGGCAGCTGCTACTCCAGCATTCCCTTATTTCCAACCCCAAATTCCCTTGGGAAGGGACTCATTGGC--------------------------------------------------------------CCAGCCTACA-TAGGCTCCCC--CC-TGCCT--------GAT--GAGCTGTGTCCAGGATGCACAT-GCTGTCTGGGGGCCC-CCACTGTGGCTGGGGAGGGTG--------------AAGGGGCAGTTCTAAGAAGACTT-GCTGAGCAGATCCGCTAAGAGATTTCCCTTCAGGCTGGGATCTTAGTGCACCAGGCCCATCTGTtcagagatg i papAnu2.chr12 I 7 C 0 s chlSab2.chr10 34349114 511 + 128595539 -TTCT-----TTTTAAACTTTTTAAACAattgagatattgttcacataccgcaaaattcaccctttaaaagtgtatagattgatggtttttaatatattcccaacagtgtacaatgatgatccttatc-taattcttgagca-tgtcatcacctccaaaagaaaccccaaatccgtta---cagt---ccctgcttttctgccctcTTGCTTGACTTCTTTCTCTTGTTCTGGAGCATC-TTCTCTCTTTTTGGTGGGAGAAGGGGTT--GGCAACATGGCAGCTGCTGCTCCAGCATtcccttatttccaaccccaaattcccttgggaagggactcattggc--------------------------------------------------------------ccagcctaca-taggctcccc--cc-tgcct--------gat--gagctgtgtccaggatgcacat-gctgtctgggggccc-ccactgtggctggggagggtg--------------aaggggcagttctaagaagactt-gctgagcagatctgctaagagatttccCTTCAGGCTGGGATCTTAGTGCACCAGGCCCATCTGTTCAGAGATG i chlSab2.chr10 I 7 C 0 s calJac3.chr6 87836312 503 - 158406734 -TTCT-----TTTTAA---------ACAattaagatattgttcacataacacaaaattcatccttttaaagtgtgtagtttgatggtttttaatgtattcccaaaagtgtacaatgatgaaccttatc-taattcttgagca-tgtcatcaccttcaaaagaaaccccacacccgtta---cagt---ccctgcttttctgccctcTTGCTTGACTTCTTTCTCTTGTTCTGGAGCATCTTTCTCTCTTTTTGGTGGGAGAAGGTGTT--GGCAACATGGCAGCCGATGCTCCACCAGTCCCTTGTTTCCAACTCCAAATTCCCTTGGGAAGGAGCTCATTGGC--------------------------------------------------------------CCAGCCCACAGCAGGTGCTCCAGCT-TGCCC--------GATGAGAGCTGTGTCCAGGATGCACAG-GCCGCCTGGGGGCCC-CCACTGT------GGAGGGTG--------------AAAGGGCAGTTCTAAGAAGACTCAGCTGAGCAGAACTGCTAAGAGAGTCCCTTTCAGGCTGGGATCTTAGCACACCAGGCCCATCTGTTCACAGATG i calJac3.chr6 C 0 I 147 s mm10.chr2 49689533 555 + 182113224 -TTGT-----TTTTAAGTTTAAAAAAAAGGAgagagatagttcatatggcataaaattcatcctttaaaa----acatttctgtggagcttagattatttctcaaactgtatagccacg-ttcttgtg-taaatttttaata-tttctacacacac--------caccaaacacacta---ccttgtacccCTCTCTTCTCCGTTTTCACTTGCCTTCTGAGTCTAAATTT---------TGCTCTCTGTTTTGTTG----AGCGTCTTGGGCAGCATGGGAGCCCCTTGATGAATGTT-CTAGGTTTCCAATCCTGCCATCTCGTggggagagg---gatggcgagggggatggtgagggggatggggatggagagggggaggggggtgcggagggggatggcTGCCAGCCTAGA-GCAGTCCCTG--CCCTGCTT---------CT--GGGC----TCCCAGATACACAC-AATGTCTGCTTCTCCATCTTTGTGCCTAGAGGGGCTGCAGAGCAGGGAGGAGAGAGGCTGTTCTAAGAAG-----GCAGGGTAGCTCAGTGGAGAGGCTGTCCTGAAGGCTTGAA-CCTGGTACACATGACCCAGTGGGTGAGTAATG i mm10.chr2 I 3 C 0 s canFam3.chr19 50599755 449 + 53741614 TTCCTTTAAATTTTAAGCTAAAAAAAAAattgagatacaactcatgtaccataagattcattttttttaagtgtacaacttgatggtttttagtatatttccaatattgtacaaccatgat--------ctattctagaacattttcatcacctccaaaggaaaccccatccctgttattgcagt---ccctgccTTTCTGTCTGCTTGCTTCA------TCTTTTGTCCGGGAGGCGG-----------ATGAGGGGGGGCGGGGAA--GGAACCATGACAGCTCCTGTTCCgt--atcccttattcccaattcctaattccaggggaaaggggctcattggc--------------------------------------------------------------ctagcctacg-gcaggggttg--cc-tgccctcagctctgac--tagtggtgtccaggATGCACACGGCTGGCTGGGTCCCCACCATGGCGACTGGGGACAGTGTAGA----------CAGGGG------------------GTGGGGAAG----------------------AGACCGGGG--------------------CAGTTCTGAGA-- i canFam3.chr19 C 0 C 0 a score=91696.000000 s hg38.chr2_GL582966v2_alt 4705 33 + 96131 aggaaacggaagtttaaagatgcagg----gttaggc s panTro4.chr2B 153126104 33 + 247518478 aggaaacggaagtttaaagatgcagg----gttaggc i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38329136 33 + 135000294 aggaaacagaagtttaaagacgcagg----gttaggc i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82280238 33 - 85365473 aggaaatggaagtttaaagacgcagg----gttaggc i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11893694 37 + 106825570 aggaaatggaagtttaaagatgcatggttagttaggc i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37597986 37 + 132586672 aggaaatggaagtttaaagatgcacggttagttaggc i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11255346 37 + 104110932 aggaaacggaAGTCTAAAGATGCATGGTtagttaggc i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34349625 37 + 128595539 AGGAAACGGAAGTTTAAAGATGCACGGTTAGTTAggc i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87836962 33 - 158406734 AAGAAAGGGAAGTTTAAAGATGCAGG----GTTAGGC i calJac3.chr6 I 147 C 0 s mm10.chr2 49690088 33 + 182113224 AGGGAGCAGAAGTTCAGACACAGACG----GATGGGC i mm10.chr2 C 0 I 106 s canFam3.chr19 50600204 12 + 53741614 -----------------AGACTCAGA----GTG---- i canFam3.chr19 C 0 C 0 a score=139154.000000 s hg38.chr2_GL582966v2_alt 4738 50 + 96131 tgggcacagtggctcagacctgtaatcccagcactttgggaggttgaggc s panTro4.chr2B 153126137 50 + 247518478 tgggcacagtggctcagacctgtaatcccagcactttgggaggttgaggc i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38329169 50 + 135000294 cgggcacagtggctcatacctgtaatcccagcactttgggaggttgaggc i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82280271 50 - 85365473 caggcacagtggctcatacctgtaatcccagcactttgggaggttgaggc i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11893731 50 + 106825570 cgggcgcggtgactcacacctgtaatcccagcactttgggaggttgaggc i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37598023 50 + 132586672 cgggcgcggtgactcacacctgtaatcccagcactttgggaggttgaggc i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11255383 50 + 104110932 cgggcgcagtgactcacacctgtaatcccagcactttgggaggttgaggc i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34349662 50 + 128595539 cgggcgcaatgactcacacctgtaatcccagcactttgggaggttgaggc i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87836995 50 - 158406734 TAATCTGgggggttcccccctgtaatcccatcacttcgggaagctgaagt i calJac3.chr6 C 0 C 0 s canFam3.chr19 50600216 43 + 53741614 -GAGCAGAGGAGCCAAG------AAGCTGACCATCCTTTGAGGCTgggac i canFam3.chr19 C 0 C 0 e mm10.chr2 49690121 106 + 182113224 I a score=229984.000000 s hg38.chr2_GL582966v2_alt 4788 92 + 96131 gggcagattgcctgaggtcaggagttcacgaccagcctggccaacatggtgaaaccctgtctcaact--aaaaaa----------aaaaaata-caaaaaaagta s panTro4.chr2B 153126187 92 + 247518478 gggcagattgcctgaggtcaggagttcacgaccagcctggccaacatggtgaaatcctgtctcaact--aaaaaa----------aaaaaata-ccaaaaaagta i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38329219 102 + 135000294 ggacagattgcctgaggtcaggagttcacgaccagcctggccaacatggtgaaaccctgtctcaact--aaaaaaaaaaacaaacaaaaaaag-caaaaaaagta i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82280321 96 - 85365473 gggcagatcgcctgaggtcaggagttcacgaccagcctggccaacatggtgaaaccctgtctcaact--aaaaaaaaaa------aaaaaaaa-aaaaaaaatta i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11893781 89 + 106825570 gagtggatcgcctgaggtcaggagtttgagaccagcctggccaacatggtgaaaccctgtctcaact--aaaaaa----------agaaaa----aaaaaaatta i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37598073 89 + 132586672 gagtggatcgcctgaggtcaggagtttgagaccagcctggccaacatggtgaaaccctgtctcaact--aaaaaa----------agaaaa----aaaaaaatta i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11255433 89 + 104110932 gagtggatcgcctgaggtcaggagtttgagaccagcctggccaacatggtgaaaccctgtctcaact--aaaaaa----------agaaaa----aaaaaaatta i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34349712 91 + 128595539 gagtggatcgcctgaggtcaggagtttgagaccagcctggccaacatggtgaaaccctgtctcaactaaaaaaaa----------aaaaaa----aaaaaaatta i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87837045 101 - 158406734 gggtggatcacctgagaccaggagttcgagaccagcctgcctaacatggggaaaccttgtttcaatt--aaaaaagaatacaa--aaagaataccaaaaaaatta i calJac3.chr6 C 0 C 0 e canFam3.chr19 50600259 0 + 53741614 C e mm10.chr2 49690121 106 + 182113224 I a score=115097.000000 s hg38.chr2_GL582966v2_alt 4880 36 + 96131 gccaggcatggtggtgtgtgcctataatcccagcta s panTro4.chr2B 153126279 36 + 247518478 gccaggcatggtggtgtgtgcctataatcccagcta i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38329321 35 + 135000294 gccaggcat-gtggtgtgtgcctataatcccagcta i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82280417 36 - 85365473 gccaggcatggtggtgtgtgcctataatcccagcta i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11893870 36 + 106825570 gccaggcatggtggtgtgtgcctataatcccagcta i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37598162 36 + 132586672 gccaggcatggtggtgtgtgcctataatcccagcta i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11255522 36 + 104110932 gccaggcatggtggtgtgtgcctataatcccagcta i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34349803 36 + 128595539 gtcaggcatggtggtgtgtgcctataatccctgcta i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87837146 36 - 158406734 gccaggtatggtgatgtgtgcctataatcccagcta i calJac3.chr6 C 0 C 0 s mm10.chr2 49690227 22 + 182113224 gccaagcctg-------------acaatccaagtt- i mm10.chr2 I 106 C 0 e canFam3.chr19 50600259 0 + 53741614 C a score=3034222.000000 s hg38.chr2_GL582966v2_alt 4916 859 + 96131 ctcaggaggctgaggcacgagaatcacttgaacctgggaggcagaggttgcagtgagctgagatcactccaccacactctagcctgggcgacagagag-agattctgtcttaaaaaaaaaaaaaaaaaagacgcagagttacaaggcccaacttaaacaccaagttattgataaaactaagaa----tagaccctaggtctgaccaa-----ccgcacatgcgataccttttcaattatatt-aaacttctc-ccctTA-------CT----ACTGTATACCTTTCGTAAA-TGACATAAAAAGAAGGCACCAACTGTTTGCCCAACTATAAATTACATCTAGCAAATCACTTTTCCTTAGGATTCCTTT----------TGTTGGCTAAAGCCTGCTTCTCCTTCTTGCCAAGGTTCTTT-ATATCTAAGGATACAGAAGCTTGTTGCTTTGATGGGATCAAGATTTAGAAGCTTAGTGCTTCTTTAGGGCTGTTTGCATTTAAATAGCTTAAACTACTGCAGGGTTCTTAT-GTGATAATCCTGGAATAAGATGTTAAACCAATTACTGCCCTCAAAATAGGGTCTTGTGTTAGAATCTTATTAAGA-TAAAAACAGCCCTAGCATGAA---GTTAGG----------GGAGGAGAGGAACAACACTC-TTAAGTCTCTAGGGCTGAATTTTACAGTCTGGATTTCTGTGTTGCATTT-GTAC-TTATGCTTACTTGTTTTATAAATAATAA------GTGGGCAAATTAGTTGCTGACTACTTTGTATTCTGAACCGG-ATAGTGAGAGGCTAAAT--CAAGAAAAAGAGGACTGACTAAGGCAA----TATCGAAAATCTGCTCCTT-AAATGAGTCCCACAGAGGTTTTAAACTTTATTTCTGAACGTCCTA-----TTTCTTAAT s panTro4.chr2B 153126315 862 + 247518478 ctcaggaggctgaggcacgagaatcacttgaacctgggaggcggaggttgcagtgagctgagatcgctccaccacactctagcctgggcgaca-agag-agattctgtcttaaaaaaaaaaaaaaaa--gacgcagagttacaaggcccaacttaaacaccaagttattgataaaactaagaa----tagaccctaggtctgaccaa-----ccgcacatgcgataccttttcaattatatt-aaacttctc-ccctTA-------CT----ACTGTATACCTTTCGTAAA-TGACATAAAAAGAAGGCACCAACTGTTTGCCCAACTATAAATTACATCTAGCAAATCACTTTTCCTTAGGATTCCTTT----------TGTTGGCTAAAGCCTGCTTCTCCTTCTTGCCAAGGTTCTTT-ATATCTAAGGATACAGAAGCTTGTTGCTTTGATGGGATCAAGATTTAGAAGCTTAGTGCTTCTTTAGGGCTGTTTGCATTTAAATAGCTTAAACTACTGCAGGGTTCTTAT-GTGATAATCCTGGAATACGATGTTAAACCAATTACTGCCCTCAAAATAGGGTCTTGTGTTAGAATCTTATTAAGA-TAAAAACAGCCCTAGCATGAA---GTTGGA----------GGAGGAGAGGAACAACACTC-TTAAGTCTCTAGGGCTGAATTTTACAGTCTGGATTTCTGTGTTGCATTT-GTAC-TTATGCTTACTTGttttataaataataattataaGTGGGCAAATTAGTTGCTGACTACTTTGTATTTTGAACCGG-ATAGTGAGAGGCTAAAT--CAAGAAAAAGAGGACTGACTAAGGCAA----TATCGAAAATCTGCTCCTT-AAATGAGTCCCACAGAGGTTTTAAACTTTATTTCTGAACATCCTA-----TTTCTTAAT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38329356 864 + 135000294 ctcaggaggctgaggcacgagaatcacttgaacccaggaggctgaggttgcagtgagctgagatcgctccaccgcactctagcctgggtgacagagag-agattctgtcttaaaaaaaaaaaaaaaa-agatgcagagttagaaggcccaacttaaacaccaagttattgataaagctaagaa----tagaccctaggtctgaccaa-----ccgcacatgcgataccttttcaattatatt-aaacttctc-ccctTA-------CT----ACTGTATACCTTTCGTAAA-TGACATAAAAAGAAGGCACCAACTGTTTGCCCAACTATAAATTACATCTAGCAAATCACTTTTCCTTAGGATTCCTTT----------TGTTGGCTAAAGCCTGCTTCTCCTTGTTGCCAAGGTTCTTT-ATGTCTAAGGATACAGAAGCTTGTTGCTTTGATGGGATCAAGATTTAGAAGCTTAGTGCTTCTTTAGGGCTGTTTGCATTTAAATAGCTTAAAGTACTGCAGGGTTCTTAC-GTGATAATCCTGGAATAAGATGTTAAACCAATTACTGCCCTCAAAATAGGGTCTTGTGTTAGAATCTTATTAAGA-TAAAAACAGCCCTAGCATGAA---GTTAGG----------GGAGGAGAGGAACAACACTC-TTAAGTCTCTAGGGCTGAATTTTACAGTCCAGATTTCTGTGTTGCATTT-GTAC-TTATGCTTACTTGttttataaataataattataaGTGGGCAATTTAGTTGCCGACTACTTTGTATTTTGAACCGG-ATAGTGAGAGGCTAAAT--CAAGAAAAAGGGGACTGATTAAGGCAA----TATCAAAAATCTGCTCCTT-AAATGAGTCCCACAGAGGTTTTAAACTTTATTTCTGAACATCCTA-----TTTCTTAAT i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82280453 853 - 85365473 ctcaggaggctgaggcacgataatcacttgaacccgggaggtggaggttgcagtgagctgagatcgctccaccgcactctagcctgggcgacagagag-agactctgtct-------aaaaaaaaaa------ctcagttagaaggcccaacttaaacaccaagttattgataaaactaagaa----tagaccctaggtctgaccaa-----ccgcacacgcgataccttttcaattatattaaaacgtctc-ccctTA-------CT----ACTGTATACCTTTCGTAAA-TGACATAAAAAGAAGGCACCAACTGTTTGCCCAACTATAAATTACATCTAGCAAATTACTTTTCCTTAGGATTCCTTT----------TGTTGGCTAAAGCCTGCTTCTCCTTCTTGCCAAGGCCCTTT-ATATCTAAGGATACAGAAGCTTGTTGCTTTGATGGGATCAAGATTTAGAAGCTTAGTGCTTCTTTAGGGCTGTTTGCATTTAAATAGCTTAAACTACTGCAGGGTTCTTAT-GTGATAATCCTGGAATAAGATGTTAAACCAATTACTGCCCTCAAAATAGGGTCTTGTGTTAGAATCTTATTAAGA-TAAAAACAGCCCTAGCATGAA---GTTAGG----------GGAGGAGAGGAACAACACTC--TAAGTCTCTAGGGCTGAATTTTACAGTCCAGATTTCTGTGTTGCATTT-GTAC-TTATGCTTACTTGTTTTATAAATAATAATTATAAGTGGGCAAATTAGTTGCTCACTACTTTGTATTTTGAACTGG-ATAGTGAGAAGCTAAAT--CAAGAAAAAGAGGAATAATTAAGGCAA----TATTGAAAATCTGCTCCTTAAAATGAGTCCCACAGAGGTTTTGAACTTTATTTCTGAACATCCTA-----TTTCTTAAT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11893906 864 + 106825570 ctcaggaggctgaggcacgagaatcacttgaacccaggaggcagaggttgctgtgagctgagatcgctccactgcactctagcttgggcgacagagag-agactctgtctga-----aaaaaaaaaa-agacgcggagttagaaggcccaacttaaacagcaagttattgataaagctaagaa----ttgaccctaggtctgacctaggtctaggcatatgtgataccttttcaattgtatg-aaacttctc-ccctTA-------CT----ACTATATACCTTTCGTAAA-TGACATAAAAAGAAGGCAACAACTGTTTGCCCAACTCTAAATTACATCTAGCAAATCACTTTTCCTTAGGAGTCCTTT----------TGTTGGCTAAAGCCTGCTTCTCCTTCTTGCCAAGATTCTTT-ATATCTAAGGATACAGAAGCTTGTTGCTTTGATGGGATCAAGATTTAGAAGCTTAGTGCTTCTTTAGGGCTGTTTGCATTTAAATAGCTTAAACTACTGCAGGGTTCTTAT-GTGATAATCCTGGAATAAGATGTTAAACCAATTACTGCCCTCAAAATAGGGTCTTGTGTTAGAATCTTATTAAGA-TAAAAACAGCCCTAGCATGAA---GTTGGG----------GGAGGAGAGGAACAACACTC--TTAGTCTCTAGGGCTGAATTTTATAGTCCAGATTTCTGTGTAGCATTT-GTAG-TTATGCTTACTTGttttataaataataattataaGTGGGCAAATTAGTTGCTGACTACTTCGTATTTTGAACTGA-GTAGTGAGAGGCTAAAT--CAAGAAAAAGAGGACTGATTAAGGCAA----TATTGAAAATCTGCTCCTTAAAATGAGTCCCACAGACGTTTTAAACTTTATTTCCGAACATGCTA-----TTTCTTAAT i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37598198 864 + 132586672 ctcaggaggctgaggcacgagaatcacttgaacccaggaggcagaggttgctgtgagctgagatcgctccactgcactctagcttgggtgacagagag-agactctgtctga-----aaaaaaaaaa-agatgcggagttagaaggcccaacttaaacagcaagttattgataaagctaagaa----ttgaccctaggtctGACCTAGGTCTAGGCATATGTGATACCTTTTCAATTGTATG-AAACTTCTC-CCCTTA-------CT----ACTATATACCTTTCGTAAA-TGACATAAAAAGAAGGCAACAACTGTTTGCCCAACTCTAAATTACATCTAGCAAATCACTTTTCCTTAGGAGTCCTTT----------TGTTGGCTAAAGCCTGCTTCTCCTTCTTGCCAAGATTCTTT-ATATCTAAGGATACAGAAGCTTGTTGCTTTGATGGGATCAAGATTTAGAAGCTTAGTGCTTCTTTAGGGCTGTTTGCATTTAAATAGCTTAAACTACTGCAGGGTTCTTAT-GTGATAATCCTGGAATAAGATGTTAAACCAATTACTGCCCTCAAAATAGGGTCTTGTGTTAGAATCTTATTAAGA-TAAAAACAGCCCTAGCATGAA---GTTGGG----------GGAGGAGAGGAACAACACTC--TTAGTCTCTAGGGCTGAATTTTACAGTCCAGATTTCTGTGTAGCATTT-GTAG-TTATGCTTACTTGTTTTATAAATAATAATTATAAGTGGGCAAATTAGTTGCTGACTACTTCGTATTTTGAACTGA-GTAGTGAGAGGCTAAAT--CAAGAAAAAGAGGACTGATTAAGGCAA----TATTGAAAATCTGCTCCTTAAAATGAGTCCCACAGACGTTTTAAACTTTATTTCCGAACATGCTA-----TTTCTTAAT i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11255558 835 + 104110932 ctcaggaggctgaggcacgagaatcacttgaacccgggaggcagaggttgctgtgagctgagatcgctccactgcactctagtctgggtgacagagag-agactctgtctg------aaaaaaaaaa-agacgcagAGTTAGAAGGCCCAACTTAAACAGCAAGTTATTGATAAAGCTAAGAA----TTGACCCTAGGT----------------------------TCTTTCAATTATATG-AAACTTCTC-CCCTTA-------CT----ACTATATACCTTTCGTAAA-TGACATAAAAAGAAGGCAACAACTGTTTGCCCAACTCTAAATTACATCTAGCAAATCACTTTTCCTTAGGAGTCCTTT----------TGTTGGCTAaagcctgcttctccttcttgCCAAGATTCTTT-ATATCTAAGGATACAGAAGCTTGTTGCTTTGATGGGATCAAGATTTAGAAGCTTAGTGCTTCTTTAGGGCTGTTTGCATTTAAATAGCTTAAACTACTGCAGGGTTCTTAT-GTGATAATCCTGGAATAAGATGTTAAACCAATTACTGCCCTCAAAATAGGGTCTTGTGTTAGAATCTTATTAAGA-TAAAAACAGCCCTAGCATGAA---GTTGGG----------GGAGGAGAGGAACAACACTC--TTAGTCTCTAGGGCTGAATTTTACAGTCCAGATTTCTGTGTAGCATTT-GTAG-TTATGcttacttgttttataaataataattataagtgGGCAAATTAGTTGCTGACTACTTCGTATTTTGAACTGA-ATAGTGAGAGGCTAAAT--CAAGAAAAAGAGGACTGATTAAGGCAA----TATTGAAAATCTGCTCCTTAAAATGAGTCCCACCGatgttttaaactttatttccGAACATCCTA-----TTTCTTAAT i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34349839 856 + 128595539 ctcaggaggctgaggcacgagaatcacttgaacccgggaggcagaggttgctgtgagctgagattgctccactgcactctagcttgggtgacagagag-agactctgtctg-------aaaaaaaaa-aGACGCGGAGTTAGAAGGCCCAACTTAAACAGCAAGTTATTGATAAAGCTAAGAA----TTGACCCTAGGTCTGACCTAGGTCTAGGCATATGTGATACCTTTTCAATTATATG-AAACTTCTC-CCCTTA-------CT----ACTATATACCTTTCGTAAA-TGACATAAAAAGAAGGCAA-AACTGTTTGCCCAACTCTAA-----ATCTAGCAAATCACTTTTCCTTAGGAGTCCTTT----------TGTTGGCTAAAGCCTGCTTCTCCTTCTTGCCAAGATTCTTT-ATATCTAAGGATACAGAAGCTTGTTGCTTTGATGGGATCAAGATTTAGAAGCTTAGTGCTTCTTTAGGGCTGTTTGCATTTAAATAGCTTAAACTACTGCAGGGTTCTTAT-GTGATAATCCTGGAATAAGATGTTAAACCAATTACTGCCCTCAAAATAGGGTCTTGTGTTAGAATCTTATTAAGA-TAAAAACAGCCCTAGCATGAA---GTTGGG----------GGAGGAGAGGAACAACACTC--TTAGTCTCTAGGGCTGAATTTTACAGTCCAGATTTCTGTGTAGCATTT-GTAG-TTATGCTTACTTGTTTTATAAATAATAATTATAAGTGGGCAAATTAGTTGCTGACTACTTCGCATTTTGAACTGA-GTAGTGAGAGGCTAAAT--CAAGAAAAAGAGGACCGATTAAGGCAA----TATTGAAAATCTGCTCCTTAAAATGAGTCCCACAGACGTTTTAAACTTTATTTCCGAACATCCTA-----TTTCTTAAT i chlSab2.chr10 C 0 I 123 s calJac3.chr6 87837182 852 - 158406734 tgctggaaggtgaagcacgagcatcacttgaacccaggaggcagaggttgcagtgagccaagattacaccacttcactctaggctggaggacagagta-gaa---------------aaaaaaaaaa-aGACACAGAGTTAGAAGGCCCAACTTAAACACCAAGTTATTGAGAAAGCTAAGAA----TAGACCCTAGGTCTGACCAA-----CTGCACATGCAATCCCTTTTCAATTCTATT-AAACTTCTC-CCCTTA-------CTAACCACTGCATACCTTTTGTAAA-TGACATAAAAGGAAGGCAACAACTGTTTGTCCAATTATAAATTACATCTAGCAAATCACTTTTCCTTAGGATTCCTTT----------TGTTGGCTAAAGCCTGCTTCTCCTTCTTGCCAAGGTTCTTT-ATATCTAAGGATACAGAAGCTTGTTGCTTTGATGGGATCAAGATTTAGAAGCTTAGCGCTTCTTTAGGGCTGTTTGCATTTAAATAGCTTAAACTACTGCAGGGTTCTTAC-GTGATAATCCTGGAAGAAGATGTTAAACCAATTACTGCCCTCAAAATAGGGTCTTGTGTTAGAATCTTATTAAGA-TAAAAACAGCCCTAGCATGAA---GTTGGG----------GGAGGAGAGGAACAACAC----TAAGTCTCTAGGGCTGAATTTTACAGTCCAGATTTCTGTGTTGCATTT-GTAG-TTATGCTTACTTGttttataaataataattataaatGGGCAAATTAGTTGCTGACTATTTTGTATTTTGAACTGA-CTAGTGAGAGGCTAAATAAAAAAAAAAAGAGGCCTGATCAAGGCAA----TATTGAAAATCTGCTTCTTAAAATGAGTCCCACAGAGGTTTTAAACTTTATTTCTGAACAT-CTG-----TTTCTTAAT i calJac3.chr6 C 0 C 0 s mm10.chr2 49690249 731 + 182113224 ----------tggtccctgagcatcac-----------------atgtggaagagaactgc-atcccacaagtgttctcca-cctgtgcaccagggcTCAGGCCCTTCCCTCATCCACACAAAATAA---------------------------------------ATAAATAAATGCAGCAA------------------------------------------------TCAAAAACCTT-AACCCTCTC-CCCTTATTTATTTCT----ACAGCAAGCTGCTCCTAACTTTACATTTCAAAAAG-------CTGTTTGTGCAATTATGAGTCACATCCGGTACACCAC-----------AGGTCTCT----------CGGTTGCTGAAAGCAACCTCGCC---------AGGCTTCCT-ATGTCTGAGGATGCAG-AGCTTGTTGCTTTGATGGGATCAAGGTTTACAAGCTTAGTGCTTCTCTACGGCTATTTATGCTGACACACTTTAAACTGCTGTAGAGGTCTTAA-GTGATAATCCT-GAATAAGATGTTAAACCAATTACTGCCCTGGAAATCGTGCCTTGTGGCAGAGTCTTATTACGATTAAGAATGGCGCTGGCTTGAAATGGTGGTG----------GGGGGAAGGGAAGAATATTCCCTCAGTCTCTAGAATCAAGTCTTACCGTCTAGGCTCCCATTGTGCATTTCCTAG-TTACGCTTGATT-TTCTATTAATAGGAATTGTAAGGGGACAGGTTA-TCAGTGTCTGCTTC------TGAACTTACGTGCTAACAGGTTAAAC--CAAAA-----GGATCCGGCTAAGGCAA----TATTG-AAATCTGCTCCTT--AATGTGTCCCATGGGGGTTTTGAACATTATTTCTGATCGTGCTGTGGTTTTTCT---- i mm10.chr2 C 0 C 0 s canFam3.chr19 50600259 821 + 53741614 cttagtgccctaaggctc----atcatttga------gagatggaag---------------------------------------------aacgga-agtttc---------------------a-agatgtagcgttggatggccagagtcacacatcaggttataggc--atctgagattaATTAGACTCTTGAACTGACCAA-----CCCTCCATGCACCATCTTTCCCATCATCTT-AAACTTTCCGCCCTTGCATTCTTCT----GCTATGTGCCTTTCCTAGA-TTATATAAAAACAAGGCAGCAACTGTTTGCCCCATTATAAATTAGATCCAGCAAGTCTTTTTACTTTACAAATCTTTTTTCCTCCCTCTGTGGGCTAACACAGGTTTCTCC---TTGCCAGGGTTCTTTAATATCTAAGGATACAGAAGCCTGTTGCTTTGATGGGATCAAGATTGAGGAGCTTAGGACATCTTTAAGGCTGTTTGCATTTAAATAACTTAAACTACTGTAGGGTTCTTATGGGGATAATCCTGGAGTAAGATGTTAAACCAATTACTGCCCTCAAAGTAGGGTCTTGTATTGGAATCTTATTAAGA-TAAAAACAGCCCCAGCATGGG---GTGAGGAAGGGGAGGTGGAGAGAAGGAACAGCACCC---ACGTCTCCAGGGCTGAATTTTACAGTCTGGCTTCCCGTCCTGCATGT-GTAGTTTATGCTCCCTTATTTCGTATATCATAATTGTAAGTGGGCAGGCTAGCTATTGACTGCTCTGTATTTTGAACTGA-GTAGTGACAGGCTTAGT--CAAGAAAAAGAGGCTTGATTAAAGCAGTATTTATTGAAAAGCAGTTCCTTAAAGTGAGCCCCAAAGAGCTTTTAAATGTTATTTCTGAACATGCTG-----TTTCTTAAT i canFam3.chr19 C 0 C 0 a score=963734.000000 s hg38.chr2_GL582966v2_alt 5775 266 + 96131 GCCAAACAATGCCTATTTATTTTTCTTCCGCCTAGTCTCACAAAGTATTTTAAATGAC-AAAACAACAAAATCACCACCCT------CGCACACACACCAAAAGCAG--------------------AAATTAATG-------AAATCAGAATCCTGTTT-CTACTTACATTAAATGTGAATATGATTCTAATTGCCAGATTTGCC-AGTATCTAGTTTGTGAC---TTTTTTTTAGATGTAATTAATTTTCTCTGTAATCT----ATGGAAAT-AAGGCCATATGTTTAAGATCTCAAAA-----------------------------------------------------------------ATAATAGAC s panTro4.chr2B 153127177 266 + 247518478 GCCAAACAATGCCTATTTATTTTTCTTCCGCCTGGTCTCACAAAGTATTTTAAATGAC-AAAACAACAAAATCACCACCCT------CGCACATACACCAAAAGCAG--------------------AAATTAATG-------AAATCAGAATCCTGTTT-CTACTTACATTAAATGTGAATATGATTCTAATTGCCAGATTTGCC-AGTATCTAGTTTGTGAC---TTTTTTTTAGATGTAATTAATTTTCTCTGTAATCT----ACGGAAAT-AAGGCCATATGTTTAAGATCTCAAAA-----------------------------------------------------------------ATAATAGAC i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38330220 267 + 135000294 GCCAAACAATGCCTATTTATTTTTCTTCCGCCTGGTCTCACAAAGTATTTTAAATGAC-AAAACAACAAAATCACCACCCT------CACACACACACCAAAAGCAG--------------------AAATTAATA-------GAATCAGAATCCTGTTT-CTACTTACATTAAATGTGAATGTGATTCTAATTGCCAGATTTGCC-AGTATCTAGTTTGTGAC--TTTTTTTTTAGATGTAATTAATTTTCTCTGTAATCT----ATGGAAAT-AAGGCCATATGTTTAAGATCTCAAAA-----------------------------------------------------------------ATAATAGAC i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82281306 269 - 85365473 GCCAAACAATGCCTATTTATTTTTCTTCCGCCTGGTCTCACAAAGTATTTGAAATGAC-AAAACAACAAAATCACCACCCC------CCCACACACACCAAAAGCAG--------------------AAATTAATA-------AAATCAGAATCCTGTTT-CTACTTACATTGAATGTGAATATGATTCTAATTGCCAGATTTGCC-AGTATCTAGTTTGTGACTTTTTTTTTTTAGATGTAATTAATTTTCTCTGCAATCT----ATGGAAAT-AAGGCCATATGTTTAAGATCTCAAAA-----------------------------------------------------------------GTAATAGAC i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11894770 265 + 106825570 GCCAAACAATGCCTGTTTATTTTTCTTCCGCCTGGTCTCACAAAATATTTGAAATGAC-AAAACAACAAAATTGCCACCCT------CACACACACACCAAAAGCAG--------------------AAATTAATA-------AAATCAGAATCCTGTTT-CTACTTACGTTAAATGTGAATATGATTCTAATTGCCAGACTTGCC-AGTATCTAGTTTGTGAC----TTTTTAAAGACATAATTAATTTTCTCTGTAATCG----ATGGAAAT-AAGGCCACATGTTTAAGATCTCAAAA-----------------------------------------------------------------ATAATAGAC i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37599062 265 + 132586672 GCCAAACAATGCCTGTTTATTTTTCTTCCGCCTGGTCTCACAAAATATTTGAAATGAC-AAAACAACAAAATTGCCACCCT------CACACACACACCAAAAGCAG--------------------AAATTAATA-------AAATCAGAATCCTGTTT-CTACTTACGTTAAATGTGAATATGATTCTAATTGCCAGACTTGCC-AGTATCTAGTTTGTGAC----TTTTTAAAGACATAATTAATTTTCTCTGTAATCG----ATGGAAAT-AAGGCCACATGTTTAAGATCTCAAAA-----------------------------------------------------------------ATAATAGAC i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11256393 265 + 104110932 GCCAAACAAtgcctgtttatttttcttccgcCTGGTctcacaaaatatttgaaatgac-aaaacaacaaaatcgccaccct------cacacacacaccaaaagcag--------------------aaattaata-------aaatcagaatcCTGTTT-CTACTTACGTTAAATGTGAATATGATTCTAATTGCCAGATTTGCC-AGTATCTAgtttgtgac----tttttaaagacataattaatTTTCTCTGTAATCG----ATGGAAAT-AAGGCCACATGTTTAAGATCTCAAAA-----------------------------------------------------------------ATAATAGAC i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34350818 265 + 128595539 GCCAAACAATGCCTGTTTATTTTTCTTCCGCCTGGTCTCACAAAATATTTGAAACGAC-AAAACAACAAAATCGCCACCCT------CACACACACACCAAAAGCAG--------------------AAATTAATA-------AAATCAGAATCCTGTTT-CTACTTACGTTAAATGTGAATATGATTCTAATTGCCAGATTTGCC-AGTATCTAGTTTGTGAC----TTTTTAAAGACATAATTAATTTTCTCTGTAATCG----ATGGAAAT-AAGGCCACATGTTTAAGATCTCAAAA-----------------------------------------------------------------ATAATAGAC i chlSab2.chr10 I 123 C 0 s calJac3.chr6 87838034 276 - 158406734 GCCAAACAAGGCCTATTTATTTTTTTTCTGCCTGGTCTCACAAAGTATCGGAAAT-AC-AAAACAACAAAATCACCACCTTCACACACACACACACACCAAAAGCAG--------------------AAATTAATA-------AAATCAGAATTCTGTTT-CTGTTTACATTAAATGTGAATATGATTCTAATTGCCAGATTTGCC-AGTATCTATTTTGTGAC--TTTTGCTTTAGATGTAATTAATTTTCTCTGTAGTCAGTCCATGGAAAT-AAGGCCACTAGTTTAAGATCTCAAAA-----------------------------------------------------------------ATACTAGAA i calJac3.chr6 C 0 C 0 s mm10.chr2 49690980 314 + 182113224 GCCGAACAATGCCTATTGGTTTCCCTTCTGCCTGGCCACACAAAGCATTTGAAATAAT-AAAATGA----------AATCT----------GACGCCTCAAGA------------------------AAGTCGAAT-------ATACCAGCATCCAGTTT-TAACCTGTATTAAACAGGAACAGGATTTTAATTGCCAGGCTTGGC-AGTACGTGGTTCATGGC---TTCTTTTTAGATGTAATTGATTTTCTCTGTAATTT----GTGGAAGTAAAAATCACATGTTTAGGGTCTCCAAAGTTgactgaatatgatcaaatacattgtgtgcatgtatgaaaAACATTTAAAAAAAATCTCAGGGGTAGTGGAA i mm10.chr2 C 0 C 0 s canFam3.chr19 50601080 289 + 53741614 GCAAAGCAACACATATTTATTTTTCTTCCAGTTGGTCTCACAAAGTGTTTGAAATGACAAAAATGACAAAATCGCCCCCCT------CCC-CACCCCCTAAAAGCAGCCAGTATTTTCTGTGGtaattaattaataaataaataaatCAGAGGGTTTTTTCCTTCTTATTTTAAATGTGAACAGGATTTTAATTGCCATATTTGCTAAATATGTAACTTATGAC----TGTTTTTAG-TATAATTAA-TTTCCCTGTAATCT----ATGGAAAT-AAGGACACGTGT---ACATCTCAAAG-----------------------------------------------------------------ATAACAGAA i canFam3.chr19 C 0 I 194 a score=1727893.000000 s hg38.chr2_GL582966v2_alt 6041 519 + 96131 AAGTCTTAATGAACATCAGACAATTCTGAAATAAATAGAATGCGCT-GA-ACCAGGGTGGAGTTGGCTGCAGGAAGGACTGGGTTAGAGATGTCCAGGA-------TTGGAGGTCAGACAGACCCATAAGGATGTGGGGAGTGTGGCAGCATGAAAGATTAGAGAAAGCTGTAGGCGTGAGTCTTTCAAATGTCACATAAGTGT-GTCCATGA-------GAGATGGGCCTCAGG--GACAGGGAAGTCT---------GACAGGTGTTCAAGTAGGCAGATGTTGCTAGGGATACAGGCAGCCAGGAG---------A-GATGCCCAGCAGTGGATTCCAGGGCTC-AAGCTAGGACCCCACATCTCAGAGTA----------------GCTGGG-ATGGTTCCAGTCAGGTAGTTCCAGACCGAGGCACATTAAGGATAATGGATCAGGGCTGAGTCAGAGCTGGGACCAGTGCTGGGTT--AGA---GTCTTTGCTTCCC-----------CTTGACTGGTCCAGAGCTGGGATG----TAGGGATGAGGTTTTA-CCTGAGTAGTCACATCCCAGCTTTACAACTTTACAAC s panTro4.chr2B 153127443 519 + 247518478 AAGTCTTAATGAAAATCAGACAATTCTGAAATAAATAGAATGCGCT-GA-ACCAGGGTAGAGTTGGCTGCAGGAAGGACTGGGTTAGAGATGTCCAGGA-------TTGGAGGTCAAACAGACCCATAAGGATGTGGGGAGTGTGGCAGCATGAAAGATTAGAGAAAGCTGTAGGCGTGAGTCTTTCAAATGTCACATAGGTGT-GTCCATGA-------GAGATGGGCCTCAGG--GACAGGGAAGTCT---------GACAGGTGTTCAAGTAGGCAGATGTTGCTAGGGATACAGGCAGCCAGGAG---------A-GATGCCCAGCAGTGGATTCCAGGGCTC-AAGCTAGGACCCCACATCTCAGAGTA----------------GCTGGG-ATGGTTCCAGTCAGGTAGTTCCAGACCGAGGCACATTAAAGATAATGGATCAGGGCTGAGTCAGAGCTGGGACCAGTGCTGGGTT--AGA---GTCTTTGCTTCCC-----------CTTGACTGGTTCAGAGCTGGGATG----TAGGGATGAGGTTTTA-CCTGAGTAGTCACATCCCAGCTTTACAACTTTACAAC i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38330487 518 + 135000294 AA-TCTTAATGAAAATCAGACAATTCTGAAATAAATAGAATGCGCT-GA-ACCAGGGTGGAGTTGGCTGCAGGAAGGACTGGGTTAGAGATGTCCAGGA-------TTGGAGGCCAAACAGACCTATAAGGATGTGGGGAGTGGGGCAGCATGAAAGATTAGAGAAAGCTGTAGGCATGAGTCTTTCAAATGTCACATAGGTGT-GTCCATGA-------GAGATGGGCCTCAGG--GACAGGGAAGTCT---------GACAGGTGTTCAAGTAGGCAGATGTTGCTAGGGATACAGGCAGCCAGGAG---------A-GTTGCCCAGCAGTGGATTCCAGGGCTC-AAGCTGGGACCCCACATCTCAGAGTA----------------GCTGGG-ATGGTTCCAGTCAGGTAGTTCCAGACTGAGGCACATTAAAGATAATGGATCAGGGCTGAGTCAGAGCTGGGACCAGTGCTGGGTT--AGA---GTCTTTGCTTCCC-----------CTTGACTGGTCCAGAGCTGGGATG----TAGGGATGAGGTTTTA-CCTGAGTAGTCACATCCCAGCTTTACAACTTTACAAC i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82281575 519 - 85365473 AAGTCTTAATGGAAATCAGACAATTCTGAAATAAATAGAATGCGCT-GA-ACCAGTGTTGAGTTGGCTGCAGGAAGGACTGGGTTAGAGATGTCCCGGA-------TTGGAGGCCAAACAGACCCATAAGGATTTGGGGAGTGTGACAGCATGAAAGATCAAAGAAAGCTGTAGGCATGAGTCTTTCAAATGTCACATACGTGT-GGCCATGA-------GAGATGGGCCTCGGG--GACAGGGGAGTCT---------GACAGGTGTTCAAGTAGGCAGATGTTGCTAGGGATACAGGCAGCCAGGAG---------A-GATGCCCAGCAGTGGATTCCAGGGCTC-AAGCTAGGACCCCACATCTCAGAGTA----------------GCTGGG-ATGGTTCCAGTCAGGTAGTTCCAGACCAAGGCACATTAAAGATAATGGATCAGGGCTGAGTCAGAGCTGGGACCAGTGCTGGGTT--AGA---GTCTTCGCTTCCC-----------CATGACTGGTCCAGAGCTGGGATG----TAGGGAGGAGGTTTTA-CCTCAGTAGTCACATCTCCGCTTTACAACTTTACAAC i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11895035 519 + 106825570 AA--TGGATTGAAAATCAGACAAATCTGAAATAAATAGAATGCACT-GA-ACTAGAATTGAGTTGGCTGCAGGAAGGGCTGGGTTAGAGATGTGCAGGA-------TTGGAGGCCAAACAGACCCATAAGGATTTGGGGAGTGTGGCAGCATGAGAGATTAGACAAAGCTGTAGATGTGAGTCTTTGAAATGTCACATAGATGT-GTCCATGA-------GAGATGGGCCTCAGACTCACAGGGGAGTCT---------GACAGGTGTTCAAGCAGGCAGATGTTGCTAGGGATACAGGCAGCCAGGAG---------A-GATGCCCAGCAGCGGATTCCAGGGCTC-AAGCTAGGACCCCACATCTCAGAGTA----------------ACTGGA-ATGGTTCCAGTCGGGTGGTTCCAGACCGAGGCACATTAAAAATAATGGATCAGGGCTGAGTCGGAACTGGGAGCAGTGCTGGGTT--AGA---GTCTCCGCTTCCC-----------CATGACTGGTCCAGAGCTGGGATG----TAAGGATGAGGTTTCA-CCTGAGTAGTCACATCCCAGCTTTACAGCTTTACAAC i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37599327 519 + 132586672 AA--TGGATTGAAAATCAGACAAATCTGAAATAAATAGAATGCACT-GA-ACTAGAATTGAGTTGGCTGCAGGAAGGGCTGGGTTAGAGATGTGCAGGA-------TTGGAGGCCAAACAGACCCATAAGGATTGGGGGAGTGTGGCAGCATGAGAGATTAGACAAAGCTGTAGATGTGAGTCTTTGAAATGTCACATAGATGT-GTCCATGA-------GAGATGGGCCTCAGACTCACAGGGGAGTCT---------GACAGGTGTTCAAGCAGGCAGATGTTGCTAGGGATACAGGCAGCCAGGAG---------A-GATGCCCAGCAGCGGATTCCAGGGCTC-AAGCTAGGACCCCACATCTCAGAGTA----------------ACTGGA-ATGGTTCCAGTCGGGTGGTTCCAGACCGAGGCACATTAAAAATAATGGATCAGGGCTGAGTCGGAACTGGGAGCAGTGCTGGGTT--AGA---GTCTCCGCTTCCC-----------CATGACTGGTCCAGAGCTGGGATG----TAAGGATGAGGTTTCA-CCTGAGTAGTCACATCCCAGCTTTACAGCTTTACAAC i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11256658 519 + 104110932 AA--TGGATTGAAAATCAGACAAATCTGAAGTAAATAGAATGCACT-GA-ACTAGAATTGAGTTGGCTGCAGGAAGGGCTGGGTTAGAGACGTGCAGGA-------CTGGAGGCCAAACAGACCCATAAGGATTTGGGGAGTGTGGCAGCATGAGCGATTAGACAAAGCTGTAGATGTGGGTCTTTGAAATGTCACATAGATGT-GTGCATGA-------GAGATGGGCCTCAGACTCACAGGGGAGTCT---------GACAGGTGTTCAAGCAGGCAGATGTTGCTAGGGATACAGGCAGCCAGGAG---------A-GATGCCCAGCAGCGGATTCCAGGGCTC-AAGCTAGGACCCCACATCTCAGAGTA----------------GCTGGA-ATGGTTCCAGTCGGGTGGTTCCAGACCGAggcacattaaaaataatggatCAGGGCTGAGTCGGAACTAGGAGCAGTGCTGGGCT--AGA---GTCTTCGCTTCCC-----------CATGACTGGTCCAGAGCTGGGATG----TAAGGATGAGGTTTCA-CCTGAGTAGTCACATCCCAGCTTTACAGCTTTACAAC i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34351083 519 + 128595539 AA--TGGATTGAAAATCAGACAAATCTGAAATAAATAGAATGCACT-GA-ACTAGAATTGAGTTGGCTGCAGGAAGGCCTGGGTTAGAGATGTGCAGGA-------TTGGAGGCCAAACAGACCCATAAGGATTTGGGGAGTGTGGCAGCATGAGAGATTAGACAAAGCTGTAGATGTGAGTCTTTGAAATGTCACATAGATGT-GTCCATGA-------GAGATGGGCCTCAGACTCACTGGGGAGTCT---------GACAGGTGTTCAAGCAGGCAGATGTTGCTAGGGATACAGGCAGCCAGGAG---------A-GATGCCCAGCAGCGGATTCCAGGGCTC-AAGCCAGGACCCCACATCTCAGAGTA----------------GCTGGA-ATGGTTCCAGTCGGGTGGTTCCAGACCGAGGCACATTAAAAATAATGGATCAGGGCTGAGTCGGAACTGGGAGCAGTGCTGGGTT--AGA---GTCTTCGCTTCCC-----------CATGACTAGTCCAGAGCTGGGATG----TAAGGATGAGGTTTCA-CCTGAGTAGTCACATCCCAGCTTTACAGCTTTACAAC i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87838310 526 - 158406734 AAGTCTTAATGAAAATCGGACAATTCTGAAATAAATAAAATGGGCG-GA-ACCAGGGTTGAGTTGGCTGCAGGAAGGGCTGGGTTAGAGATGTCCCGGA-------CTGGAGGCTAAATGGACCTATAAGGATTCAGGGAGCACGGCAGCATGAGAGATTAAAGAAAGCTGTAGGGGTGAGTCTTTCAAATGTCACATAGGTGT-GTCCATGA-------GAGATGGGCCTGAGG--GACAGGGGAGTCT---------GACAGGTGTTCACGCAGGCAGATGTTGCG--------TGACAACCAGGAG---------A-GATGCCCAGCTGCAGATTCCAGGGCTC-AAGCTAGGAACCCACATCTCAGAGTAGCTGGGATAATTACAGGCTGGG-ATGGTTCCAGTCAGGTAGTTCCAGACCAAGGTACATTAAAGATAATGGACGAGATTTGAGTCGGAGCTGGGATTAGTGCTGGGTT--AGA---GTATTTGCTTCCC-----------CATGACTAGTCCAGAGCCGGGATA----TAGGGATGCGGTTTCA--CTGAGTAGTCGCATTCCAGTTTTACAACTTTACAAC i calJac3.chr6 C 0 C 0 s mm10.chr2 49691294 524 + 182113224 AA-TCTTAATGGCAGTCAGGCAATCATG----AGCTGGAATAGACT-GACACCAGAATGAGACCAGCTTCAGGAGAGCCT-GGCTAGAGACGACTAGAATTGGGCTTTGGGGACCTCACAGA-------------GGTGAGTG-GGCAACCTGAAAGGTTAGCGAGAACGGT---TAggggctggtgggatagctcagtggtacagtgcatgccttgcgtgtgtgaggccctagACGACCAGAGAGATGTAGTGCACTGGGCAGATG----AACAGACAGGTATTAGCAGAGGTACAGGTACCCAGGAGCAGGTGCCAG-GACACTCAGCTGCTGCTTGTAGATTTC-AAAGTAGGA------ATCTCAAAGCT----------------GCCGGGAACTGGGCCAGT-GGGTGGTGCTAGATGAAGGCACACAAAAGATAACAGGCCAGGGCTGAGCTACAACAGAGTTTAGTGTCAGGGC--AGAGGGGCCTTCACATTCT-----------CCAGA-----TCAGAGGTGAGGTTGGTCCACTCCTGAAGTTTCA-CCTGGGTAGTCACAGCCTAGCTTTACAGCTGTACAGC i mm10.chr2 C 0 I 792 s canFam3.chr19 50601563 502 + 53741614 AAGTCTTCATGAAAACCAGATAGTTTTGAAGTGTGTTGAATGTGTTGGA-ACTAGGGTTGAGTTGGCTGCAAGGAGG-CTGAGTTAGAGACATTTAGGA-------TTAGAGGCCAAACAGACCC----------TAGGATTCCAGCCACAGGGAGAAGTTTCAGGAGCAGG------GAGTCTTTCCAAGGTCAGCTAGGTGT-GTCTATGA-------CGCACAGGGCTTGGT--GACTGGGGAGTTT---------GACAGATGATCAGGCAAGCTCAAGCTGTTAGGCAGGCAGGCAACTTGGAG---------AGGATGCCCAGCTACACATTCCAGAGTTCAAAGCCAAGACCCCAGATCTCAGGGAA----------------GCTGGG-A-------AATCAGGAGGCTCCAG-----GATTCAGACAAGGTAATGAACCCGAG--GGGTGAGGCCTGG---TGCTGCTGGGTTTGGGA---GGCTTCACTGCCCCTAACCAGAGGCAGGACTAGTCCAGAGCGGGGATG----CCAGGGAGAGGTTTCACCCTATAGACTTACACCTCAGCTTTACAACTTTTTTCC i canFam3.chr19 I 194 C 0 a score=6291.000000 s hg38.chr2_GL582966v2_alt 6560 3 + 96131 TGT-- s panTro4.chr2B 153127962 3 + 247518478 TGT-- i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38331005 3 + 135000294 TGT-- i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82282094 3 - 85365473 TGT-- i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11895554 3 + 106825570 TGT-- i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37599846 3 + 132586672 TGT-- i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11257177 3 + 104110932 TGT-- i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34351602 3 + 128595539 TGT-- i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87838836 3 - 158406734 TGT-- i calJac3.chr6 C 0 C 0 s canFam3.chr19 50602065 3 + 53741614 --TTC i canFam3.chr19 C 0 C 0 e mm10.chr2 49691818 792 + 182113224 I a score=5646428.000000 s hg38.chr2_GL582966v2_alt 6563 1575 + 96131 TTT-----CCTTTCTGCCCACTCCCTTGTTTAGATTTCAAAAGCACTTATGAACATAGGGCAGAT--AAGTTTATTGGGTAGGCAGACAGCAGATGTAAac--agagtacagaatcctagagggggatttttgaca-tcgtaaagccctatggcttcatgtgacagatggtacaattgaggcctagggtcttggttatgtgtgaattgagtccctaagaccacatatttagttaAagca---------ggtctca-gacatcagccagcataagaatcgcctgggcaactgagaaccagattcctagttccttttatctgggattcggattcagcaggactgtagtagggttcagggttctgcagttcaaacaggttct-taggtgatgctgatgaaggtggtgctgtggctgagccttga----gaCTAATGGGAAGGCCTCCTTTTCTTCTCACAGTCTAACC-ATCTTTTATCAAGTC---------------------------------------------------CCATTTTGTTCAGA--TCTTTCCTGG-----------ATGCACCAGAGCTGGCCA-------------------------------CCATTAC------------------------CAGCTCTTGCTCAGTTACCTTTCTGAGCTCTTGTAGTTCTAAACACACTGCCCTTGCCCTC-TCCTGGCTTCTTGCATGTGAACATTTGGGCTAAGTC-----TCCTTCATGATAC-TGTCAGTATCATGCAATAAGGTGAGGCCTACT----------------------GAGTGTTTTCT-----------------------AAGCGTGCTTGGTGCTCATCTAACTTAAAGCCTAGAGTCCTCCTGTAAG----TGTCTAGCACATGATGTTAAGAACACTTGAATGACAACCAAAGGGAGCTGTGATGTGTGTAGGTGGAGAGTGGTCCACACTTAG-GGAAGCGTAGAGCAAGCGGG--AAGTAGGGGAATCCCAGTAGAGCTGGCCA-GATTTTAAG-TCTTCACTTTGAACCCCTCTTC-----TTACTCTTCTTAGCCATGCATGATGAAAGCTTTCATAAGTACTAATAATGGCATTTTTGAAATACACTGCGGCATGTCTATTCCAAGCTCAATTTGTTTTTAACTAGGTTTCCTATTTTGAGATCTACTTGGACAAAATAAGGGACTTACTTGATGGTAAGT--AACCTCAGTGCTTGTCCTTTATTTGTTCTGTAAC----GAAAGTCC---------------GGGGAGGTTGAAATGGTTTATCACACTTCTGCTTAAGGAATTAATGAAAATTTATAGAGATACTCTGTTGCCTTCAGGGTATATGTTTATTCTCAGCCAAGGCTTAAACTTGCATATTGCAAAGAGATTAGATTTGACTGTC-TTTGTAACAAACTTCCATTTTTCCTCCAATATAGAGTCTTTAACTTTTATTTTCTTCTTTGCCTGCTGTCATTCTCATCTTTT-TAGTATCCAAGACCAACTTGGCTGTTCATGAAGATAAAAACAGAGTCCCGTATGTAAAGGTATGAGGAAGATTTGATTGGTGATGCAATTAATTTCTCTCCAGTCTCTGTCATAATAATTATTACATAAGATGTGCAGAATATTATCTGTAAAGAGCATATAGGCATTTATTCAGGCTCCTTATATTTAATATTCATCTGGTTTTAAAAA----------TTGACATTTACTTTCTTCAATTGTATCTTT-------------------CCTTTATG-ACATTA-----------------TT--------------ATTTAATATT----GTTCACATTT s panTro4.chr2B 153127965 1576 + 247518478 TTT-----CCTTTCTGCCCACTCCCTTGTTTAGATTTCAAAAGCACTTATGAACATAGGGCAGAT--AAGTTTATTGGGTAGGCAGACAGCAGACGTAAac--agagtacagaatcctagagggggatttttgaca-tcgtaaagccctatggcttcatgtgacagatgggacaattgaagcctagggtcttggttatgtgtgaattgagtccctaagaccacatatttagttaAagca---------ggtctca-gacatcagccagcttaagaatcgcctggggaactgagaaccagattcctagttccttttctctgggattcggattcagcaggactgtagtagggttcagggttctgcagttcaaacaggttct-taggtgatgctgatgaaggtggtgctgtggctgagccttga----gaCTAATGGGAAGGCCTCCTTTTCTTCTCACAGTCTAACC-ATCTTTTATCAAGTC---------------------------------------------------CCATTTTGTTCAGA--TCTTTCCTGG-----------ATGCACCAGAGCTGGCCA-------------------------------CCATTAC------------------------CAGCTCTTGCGCAGTTACCTTTCTGAGCTCTTGTAGTTCTAAACACACTGCCCTTGCCCTC-TCCTGGCTTCTTGCATGTGAACATTTGGGCTACGTC-----TCCTTCATGATAC-TGTCAGTATCATGCAATAAGGTGAGGCCTACT----------------------GAGTGTTTTCT-----------------------AAGCGTGCTTGGTGCTCATCTAACGTAAAGCCTAGAGTCCTCCTGTAAG----TGTCTAGCACATGATGTTAAGAACACTTGAATGACAACCAAAGGGAGCTGTGATGTGTGTGGGTGGAGAGTGGTCCACACTTAG-GGAAGCGTAGAGCAAGCGGG--AAGCAGGGGAATCCCAGTAGAGCTGGCCA-GATTGTAAG-TCTTCACTTTGAACCCCTCTTC-----TTACTCTTCTTAGCCATGCATGATGAAAGCTTTCATAAGTACTAATAATGGCATTTTTGAAATACACTGTGGCATGTCTATTCCAAGCTCAATTTGTTTTTAACTAGGTTTCCTATTTTGAGATCTACTTGGACAAAATAAGGGACTTACTTGATGGTAAGT--AACCTCAGTGCTTGTCCTTTATTTGTTCTGTAAC----AAAAGTCC---------------GGGGAGGTTGAAATGGTTTATCACACTTCTGCTTAAGGAATTAATGAAAATTTATAGAGATACTCTGTTGCCTTCAGGGTATATGTTTATTCTCAGCCAAGGCTTAAACTTGCATATTGCAAAGAGATTAGATCTGACTGTCCTTTGTAACAAACTTCCATTTTTCCTCCAATATAGAGTCTTTAACTTTTATTTTCTTCTTTGCATGCTGTCATTCTCATCTTTT-TAGTATCCAAGACCAACTTGGCTGTTCATGAAGATAAAAACAGAGTCCCGTATGTAAAGGTATGAGGAAGATTTGATTGGTGATGCAATTAATTTCTCTCCAGTCTCTGTCATAATAATTATTACGTAAGATGTGCAGAATATTATCTGTAAAGAGCATATAGGCATTTATTCAGGCTCCTTAAATTTAATATTCATCTGGTTTTAAAAA----------TTGACATTTACTTTCTTCAATTGTATCTTT-------------------CCTTTATG-ACATTA-----------------TT--------------ATTTAATATT----ATTCACATTT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38331008 1581 + 135000294 TTT-----CCTTTCTGCCCACTCCCTTGTTTAGATTTTAAAAGCACTTATGAACATAGGGCAGAT--AAGTTTATTGGGTAGGCAGAAAGCAGATGTAAac--agagtacagaatcctagagggggatttttgaca-tcttaaagccctaaagcttcatgtgacagatgggacaattgaggcctagggtctcggttatgtgtgaattgagtccctaagaccacatatttagttaAagca---------ggtctca-gacatcagccagcataagaatcgcctggggaactgagaaccagattcctagttccttttctctgggattcggattcagcaggactgtagtggggttcagggttctgcagttcaaacagattct-taggtgatgctgatgaaggtggtgctgcggctgagccttga----gaCTAATGGGAAGGCCTCCTTTTCTTCTCACAGTGTAGCC-ATCTTTTATCAAGTC---------------------------------------------------CCATTTTGTTCAGA--TCTTTCCTGG-----------ATGCACCAGAGCTGGCCA-------------------------------CCATTAC------------------------CAGCTCTCGCCCAGTTACCTTTCTGAGCTCTTGTAGTTCTAAACACACTGCCCTTGCCCTC-TCCCGGCTTCTTGCATGTGAACATTTGGGCTAAGTCCCTCATCCTTCATGATAC-TGTCGGTATCATGCAATAAGATGAGGCCTACT----------------------GATTGTTTTCT-----------------------AAGCTTGCTTGGTGCTCATCTAACGTAAAGCCTAGAGTCCTCCTATAAG----TGTCTAGCACATGATGTTAAGAACACTTGAATGACAACCAAAGGGAGCTGTGATGTTTGTGGGTGGAGAGTGGTCCACACTTAG-GGAAGCGTAGAGCAAGCGGG--AAGCAGGGGAATCCCAGTAGAGCTGGCCA-GATTATAAG-TCTTCACTTTGAACCCCTCTTC-----TTACTCTTCTTAGCCATGCATGACGAAAGCTTTCATAAGTACTAATAATGGTATTTTTTAAATACACTGTGGCATGTCTATTCCAAACTCAATTTGTTTTTAACTAGGTTTCCTATTTTGAGATCTACTTGGACAAAATAAGGGACTTACTTGATGGTAAGT--AACCTCAGTGCTTGTCCTTTATTTGTTCTGTAAC----AAAAGTCC---------------GGGGAGGTTGAAATGGTTTATCACACTTCTGCTTAAGGAATTAATGAAAATTTATAGAGATACTCTATTGCCTTCAGGGTATATGTTTATTCTCAGCCAAGGCTTAAACTTGCATATTGCAAAGAGATTAGATTTGCCTGTCCTTTGTAGCAAACTTCCATTTTTCCTCCAATATAGAGTCTTTAACTTTTATTTTCTTCTTTGCATGCTGTCATTCTCATCTTTT-TAGTATCCAAGACCAACTTGGCTGTTCATGAAGATAAAAACAGAGTCCCGTATGTAAAGGTATGAGGAAGATTTGATTGGTGATGCAATTAATTTCTCTCCAGTCTCTGTCATAATAATTATTACATAAGATGTGCAGAATATTATCTGTAAAGAGCATATAGGCATTTATTCAGGCTCCTTAAATTTAATATTCATCTGGTTTTAAAAA----------TTGACATTTACTTTCTTCAATTGTATCTTT-------------------CCTTTATG-ACATTA-----------------TT--------------ATTTAATATT----ATTCACATTT i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82282097 1582 - 85365473 TTT-----CCTTTCTGCCCATTCCCTTGTTTAGATTTCAAAAGCACTTATGAACATAGGGCAGAT--AAGTTTTTTGGGTAGGCAGAAAGCAGATGTAAAC--AGAGTACAGAATCCTAGAGGGGGATTTTTGACATTTGTAAAGCCCTGTGGCTTCATGTGACAGATGGGACAATTGAGGCCTAGGGTCTTGGTTATGTGTGAATTGAGTCCCTGAGACCACATATTTAGTTAAagca---------ggtctca-gacatcagccagcataagaatcgtctggggaactgagaaccagattcctagttccttttctctgggattcggattcagcagaactgcagtagggttcagggttctgcagttcaaacaggttct-taggtgatgctgatgaaggtggtgctgcggctgagccttga----gTCTAATGGGAAGGCCTCCTTTTCTTCTCACAGTCTAACC-ATCTTTCATCAAGTC---------------------------------------------------CCATTTTGTTCAGA--TCTTTCCTGG-----------ATTCACCAGAGCTGGCCC-------------------------------CCATTAC------------------------CAGCTCTCGCCCAGTTACCTTTCTGAGCTCCTGTAGTTCTAAACACACTGCCCTTGCCCTC-TCCCGGCTTCTTGCAAGTGAACATTTGGGCTAAGTGCCTCCTCCTTCATGATAC-TGTCAGTATCATGCAATAAGGTGAGGCCTACT----------------------GATTGTTTTCT-----------------------AAGCTTGCTTGGTGCTCATCTAACGTAAAGCCTAGAGTCCTCCTATAAG----TGTCTAGCACACGATGTTAAGAACACCTGAATGACAACCAAAGGGAGCTGTGATGTGTGTGGGTGGAGAGTTGTCCACACTTAG-GGAAGCTTAGAGCAAGCGGG--ACGCAGGGGAATCCCAGTAGAGCTGGCCA-GATTATAAG-TCTTCACTTTCAACCCCTCATC-----TTACTCTTCTCAGCCATGCATGACAAAAGCTTTCATAAGTACTAATAATGGTATTTTTGAAATACACTGTGGCATGTCTATTCCAAACTCAATTTGTTTTTAACTAGGTTTCCTATTTTGAGATCTACTTGGACAAAATAAGGGACTTACTTGATGGTAAGT--AACCTCAGTGCTTGTCCTTTATTTGTTCTGTAAC----AAAAGTCC---------------AGGGAGGTTGAAATGGTTTATCACACTTCTGCTTAAGGAATTAATGAAAATTTATAGAGATACTCTATTGCCTTCAGGGTATATGTTTATTCTCAGCCAAGGCTTAAACTTGCATATTGCAAAGAGATTAGATTTGCCTGTACTTTGTAACAAACTTCCATTTTTCCTCCAATATAGAGTCTTTAACTTTTATTTTCTTCTTTGCATGCTGTCATTCTCATCTCTA-TAGTATCCAAGACCAACTTGGCTGTTCATGAAGATAAAAACAGAGTCCCGTATGTAAAGGTATGAGGAAGATTTGATTGGTGATGCAATTAATTTCTCTCCAGTGTCTGTCATAATAATTATTACATAAGATGCGCAGAATGTTATCTGTAAAGAGCATATAGGCATTTATTCAGGCTCCTTAAATTTAATATTCATCTGGTTTTAAAAA----------TTGACATTTACTTTCTTCAGTTGTGTCTTT-------------------TCTTTATG-ACATTA-----------------TT--------------ATTTAATGTT----ATTCACATTT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11895557 1580 + 106825570 TTT-----CCTTTCTGCCCATTCCCTTGTTTAGATTTCAAAAGAACTTATGAACATAGGGCAGAT--AAGTTTATTGGGTAGGCAGAAAGCAAATGTAAAC--AGAGTACAGAATCCTGGAGGGGGATTTTTGACA-TCGTAAAGCCCTATGGCTTCATGTGACAGATGGGACAATTGAGGCATAGGGTCTTGG-TATGTGTAAATTGAGTCCCTAAGACCTCATATTTAGTTAAagca---------ggtctca-gacatcagccagcataagaatcgcctggggaattgagaaccagattcctaggtcctgttctctgggatttggattcagcaggactgcagtagggttcagggttctgcagttcaaacaggttct-taggcgatgctgatgaaggtggtGCTGCAGCTGAGCCTTGA----GACTAATGGGAAGGCCTCCTTTTCTTCTCACAGTCTAACC-ACCTTTTTTCAAGTC---------------------------------------------------CCATTTTGTTCAGA--TCTTTCCTGG-----------ATGCACCAGAGCTGGCCA-------------------------------CCGTTAC------------------------CAGCTCTTGCCCAGTTACCTTTCTGAGCTCTTGTAGTTCTAAAAACACTGCCCTTGTCCTC-TCCCGGCTTCTTGCATGTGAACATTTGGACTAAGTCCCTGCTCCTTCATGATAC-TGTCAGTATCATGCAATAAGGTGAGGCCTACT----------------------GATTGTTTTCT-----------------------AAGCTTGCTTGGTGCTTGTCTAACATAAAGTCTAGAGTCCTCCTGTAAG----TGTCTAGCACACGATGTTAAGAACACCTGAATGACAACCAAAGGGAGCTGTGATGTGTGGGGATGGAGAATGGTCCACACTTAG-GGAAGCGTAGAGCTAGCAGG--AAGCAGGGGAATCCCAGTAGAGCTGGCCA-GATTCTGAG-TCTTCACTTTGAACCCCTCTTC-----TTACTCTTCTTAGCCATGCATGATAAAAGCTTTCATAAGTACTAATAATGGTATTTTTGAAATACACTGTGGCATGTCTATTCCCAACTCAATTTGTTTTTAACTAGGTTTCCTATTTTGAGATCTACTTGGACAAAATAAGGGACTTACTTGATGGTAAGT--AACCTCAGTGCTTGTCCTTTATTTGTTCTGTAAC----AAAAGTCC---------------GGGGAGGTTGAAATGGTTTATCACACTTCTGCTTAAGGAATTAATGAAAAGTTATAGAGATACTCTGTTGCCCTCAGGGTATATGTTCATTCTCAGCCAAGGCTTAAACTTGCGTATTGCAAAGAGATTAGATTTGCCTGTCCTTTGTAACAAACTTCCATTTTTCCTCCAATATAGAGTCTTTAACTTTTATTTTCTTCTTTGCATGCTGTCATTCTCATCTCTG-TAGTATCCAAGACCAACTTGGCCGTTCATGAAGATAAAAACAGAGTCCCGTATGTAAAGGTATGAGGAAGATTTGATTGGTGATGCCATTAATTTCTCTGCAGTCTCTGTCATAATAATTATTACATAAGATGCACAGAATATTATCTGTAAAGAGCATATAGGCATTTAATCAGGCTCCTTAAATTTAATATTCATCTGGTTTTAAAAG----------CTGACATTTATTTTCTTCAATTGTATCTTT-------------------CCTTTACG-ACATTA-----------------TT--------------ATTTAACATT----ATTCACATTT i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37599849 1578 + 132586672 TTT-----CCTTTCTGCCCATTCCCTTGTTTAGATTTCAAAAGAACTTATGAACATAGGGCAGAT--AAGTTTATTGGGTACGCAGAAAGCAAATGTAAAC--AGAGTACAGAATCCTGGAGGGGGATTTTTGACA-TCGTAAAGCCCTATGGCTTCATGTGACAGATGGGACAATTGAGGCATAGGGTCTTGG-TATGTGTAAATTGAGTCCCTAAGACCTCATATTTAGTTAAagca---------ggtctca-gacatcagccagcataagaatcgcctggggaattgagaaccagattcctaggtcctgttctctgggatttggattcagcaggactgcagtagtgttcagggttctgcagttcaaacaggttct-taggcgatgctgatgaaggtggtGCTGCAGCTGAGCCTTGA----GACTAATGGGAAGGCCTCCTTTTCTTCTCACAGTCTAACC-ACCTTTTTTCAAGTC---------------------------------------------------CCATTTTGTTCAGA--TCTTTCCTGG-----------ATGCACCAGAGCTGGCCA-------------------------------CCGTTAC------------------------CAGCTCTTGCCCAGTTACCTTTCTGAGCTCTTGTAGTTCTAAAAACACTGCCCTTGTCCTC-TCCCGGCTTCTTGCATGTGAACATTTGGACTAAGTCCCTGCTCCTTCATGATAC-TGTCAGTATCATGCAATAAGGTGAGGCCTACT----------------------GATTGTTTTCT-----------------------AAGCTTGCTTCGTGCTTGTCTAACATAAAGTCTAGAGTCCTCCTGTAAG----TGTCTAGCACACGATGTTAAGAACACCTGAATGACAACCAAAGGGAGCTGTGATGTGTGGGGATGGAGAATGGTCCACACTTAG-GGAAGCGTAGAGCTAGCAGG--AAGCAGGGGAATCCCAGTAGAGCTGGCCA-GATTCTGAG-TCTTCACTTTGAACCCCTCTTC-----TTACTCTTCTTAGCCATGCATGATAAAAGCTTTCATAAGTACTAATAATGGTATTTTTGAAATACACTGTGGCATGTCTATTCCCAACTCAATTTGTTTTTAACTAGGTTTCCTATTTTGAGATCTACTTGGACAAAATAAGGGACTTACTTGATGGTAAGT--AACCTCAGTGCTTGTCCTTTATTTGTTCTGTAAC----AAAAGTCT---------------GGGGAGGTTGAAATGGTTTATCACACTTCTGCTTAAGGAATTAATGAAAAGTTATAGAGATACTCTGTTGCCCTCAGGGTATATGTTCATTCTCAGCCAAGGCTTAAACTTGCGTATTGCAAAGAGATTAGATTTGCCTGTCCTTTGTAACAAACTTCCATTTTTCCTCCAATAT--AGTCTTTAACTTTTATTTTCTTCTTTGCATGCTGTCATTCTCACCTCTG-TAGTATCCAAGACCAACTTGGCCGTTCATGAAGATAAAAACAGAGTCCCGTATGTAAAGGTATGAGGAAGATTTGATTGGTGATGCCATTAATTTCTCTGCAGTCTCTGTCATAATAATTATTACATAAGATGCACAGACTATTATCTGTAAAGAGCATATAGGCATTTAATCAGGCTCCTTAAATTTAATATTCATCTGGTTTTAAAAG----------CTGACATTTATTTTCTTCAATTGTATCTTT-------------------CCTTTACG-ACATTA-----------------TT--------------ATTTAATATT----ATTCACATTT i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11257180 1577 + 104110932 TTT-----CCTTTCTGCCCATTCCCTTGTTTAGATTTCAAAAGAACTTATGAACATAGGGCAGAT--AAGTTTATTGGGTAGGCAGAAAGCAAATGTAAAC--AGAGTACAGAATCCTGGAGGGGGATTTTTGACA-TCGTAAAGCCCTATGGCTTCATGTGACAGATGGGACAATTGAGGCCTAGGGTCTTGG-TATGTGTAAATTGAGTCCCTAAGACCTCATATTTAGTTAAAGCA---------GGTCTCA-GACATCAGCCAGCATGAGAATCGCCTGGGGAATTGAGAACCAGGTTCCTAGGTCCTGTTCTCTGGGATTTGGATTCAGCAGGACTGCAGTAG-GTTCGGGGTTCTGCAGTTCAAACAGGTTCT-TAGGCGATGCTGATGAAGGTGGTGCTGCAGTTGAGCCTTGA----GACTAATGGGAAGGCCTCCTTTTCTTCTCACAGTCTAACC-ACCTTTTTTCAAGTC---------------------------------------------------CCATTTTGTTCAGA--TCTTTCCTGG-----------ATGCACCAGAGCTGGCCA-------------------------------CCGTTAC------------------------CAGCTCTTGCCCAGTTACCTTTCTGAGCTCTTGTAGTTCTAAAAACACTGCCCTTGTCCTC-TCCCGGCTTCTTGCATGTGAACATTTGGACTAAGTCCCTGCTCCTTCATGATAC-TGTCAGTATCATGCAATAACGTGAGACCTACT----------------------GATTGTTTTCT-----------------------AAGCTTGCTTGGTGCTTGTCTAACATAAAGTCTAGAGTCCTCCTGTAAG----TGTCTAGCACACGATGTTAAGAACACCTGAATGACAACCAAAGGGAGCTGTGATGTGTGGGGATGGAGAATGGTCCACACTTAG-GGAAACGTAGAGCTAGCAGG--AAGCAGGGGAATCCCAGTAGAGCTGGCCA-GATTCTGAG-TCTTCACTTTGAACCCCTCTTT-----TTACTCTTCTTAGCCATGCATGACAAAAGCTTTCATAAGTACTAATAATGGTATTTTTGAAATACACTGTGGCATGTCTATTCCCAACTCAATTTGTTTTTAACTAGGTTTCCTATTTTGAGATCTACTTGGACAAAATAAGGGACTTACTTGATGGTAAGT--AACCTCAGTGCTTGTCCTTTATTTGTTCTGTAAC----AAAAGTCC---------------GGGGAGGTTGAAATGGTTTATCACACTTCTGCTTAAGGAATTAATGAAAAGTTATAGAGATACTCTGTTGCCTTCAGGGTATATGTTCATTCTCAGCCAAGGCTTAAACTTGTGTATTGCAAAGAGATTAGATTTGCCTGTCCTTTGTAACAAACTTCCATTTTTCCTCCGATATAGAgtc--taacttttattttcttctttgcatgCTGTCATTCTCACCTCTG-TAGTATCCAAGACCAACTTGGCCGTTCATGAAGATAAAAACAGAGTCCCGTATGTAAAGGTATGAGGAAGATTTGATTGGTGATGCCATTAATTTCTCTGCAGTCTCTGTCATAATAATTATTACATAAGATACACAGAATATTATCTGTAAAGAGCATATAGGCATTTAATCAGGTTCCTTAAATTTAATATTCATCTGGTTTTAAAag----------ctgacatttattttcttcaattgtATCTTT-------------------CCTTTACG-acatta-----------------tt--------------atttaacatt----attcACATTT i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34351605 1577 + 128595539 TTT-----CCTTTCTGCCCATTCCCTTGTTTAGATTTCAAAAGAACTTATGAACATAGGGCAGAT--AAGTTTATTGGGTAGGCAGAAAGCAAATGTAAAC--AGAGTACAGAATCCTGGAGGGGGATTTTTGACA-TCGTAAAGCCCTATGGCTTCATGTGACAGATGGGACAATTGAAGCATAGGGTCTTGG-TGTGTGTAAATTGGGTCCCTAAGACCTCACATTTAGTTAAagca---------ggtctca-gacatcagccagcataagaatcgcctggggaattgagaaccagattcctaggtcctgttctctgggatttggattcagcaggactgcagtag-gttcagggttctgcagttcaaacaggttct-taggcgatgctgatgaaggtggtGCTGCAGCTGAGCCTTGA----GACTAATAGGAA-GCCTCCTTTTCTTCTCACAGTCTAATC-ACCTTTTTTCAAGTC---------------------------------------------------CCATTTTGTTCAGA--TCTTTCCTGG-----------ATGCACCAGAGCTGGCCA-------------------------------CCGTTAC------------------------CAGCTCTTGCCCAGTTACCTTTCTGAGCTCTTGTAGTTCTAAAAACACTGCCCTTGTCCTC-TCCCGGCTTCTTGCATGTGAACATTTGGACTAAGTCCCTGCTCCTTCATGATAC-TGTCAGTATCATGCAATAAGGTGAGGCCTACT----------------------GATTGTTTTCT-----------------------AAGCTTGCTTGGTGCTTGTCTAACATAAAGTCTAGAGTCCTCCTGTAAG----TGTCTAGCACACGATGTTAAGAACACCTGAATGACAACCAAAGGGAGCTGTGATGTGTGGGGATGGAGAATGGTCCACACTTAG-GGAAGCGTAGAGCTAGCAGG--AAGCAGGGGAATCCCAGTAGAGCTGGCCA-GATTCTGAG-TCTTCACTTTGAACCTCTCTTC-----TTACTCTTCTTAGCCATGCATGATAAAAGCTTTCATAAGTACTAATAATGGTATTTTTGAAATACACTGTGGCATGTCTATTCCCAACTCAATTTGTTTTTAACTAGGTTTCCTATTTTGAGATCTACTTGGACAAAATAAGGGACTTACTTGATGGTAAGT--AACCTCAGTGCTTGTCCTTTATTTGTTCTGTAAC----AAAAGTCC---------------GGGGAGGTTGAAATGGTTTATCACACTTCTGCTTAAGGAATTAATGAAAAGTTATAGAGATACTCTGTTGCCTTCAGGGTATATGTTCATTCTCAGCCAAGGCTTAAACTTGCGTATTGCAAAGAGATTAGATTTGCCTGTCCTTTGTAACAAACTTCCATTTTTCCTCCAATATAGAGTCTTTAACTTTTATTTTCTTCTTTGCATGCTGTCATTTTCACCTCTG-TAGTATCCAAGACCAACTTGGCCGTTCATGAAGATAAAAACAGAGTCCCGTATGTAAAGGTATGAGGAAGATTTGATTGGTGATGCCATTAATTTCTCTGCAGTCTCTGTCATAATAATTATTACATAAGATGCACAGAG-ATTATCTGTAAAGAGCATATAGGCATTTAATCAGGCTCCTTAAATGTAATATTCATCTGGTTTTAAAAG----------CTGACATTTATTTTCTTCAATTGTATCTTT-------------------GCTTTACG-ACATTA-----------------TT--------------ATTTAATATT----ATTCACATTT i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87838839 1602 - 158406734 TTC-----CCTTTCTGCCCATTCCCTTGTTTAGATTTCAAAAGCATTTATGAACATAGGTCAGATAAAAGTTTATTGGGTAGGCAGAAAGCAGATGTAAAC--AGAGTACAGAATCCTAGAGGGAGACTTTTTACA-TCGTAACGCCCTATGGCTTCATGTGACAGATGGGACAATTGAGGCCTAGGGTCTTGGTTAGGTGTGAGTTGAGTCCCTAAGACCACATATTTAGTTAAagca---------ggtctca-gacataagccagcataagaatcacctggggaattgagaaccagattcctaggtcctgttctctaggcttcagattcagcaggactgcagtag-ggtctgggctctgcagttcagacaggttct-taggtgatgctgatgaaggtggtGCTGCAGCTGAGCCTTGA----GACTGATGGGAAGGCCTCCCTTTCCTCTCACTGTCTACCC-ATCTTTTATCAAGTC---------------------------------------------------ACATTTTGTTTAGA--TCTTTCCTGA-----------ATGCGCCAGAGCT-GTCA-------------------------------CCATCAC------------------------CGGCTCTCACCCAGTTACCTTTCTGGACTCTTGTAGTTCCAAACCCACTGGCCCTGCCCTC-TCCAGGCTTCTTGCATATGAACATTTGGATTAAGTCCCTCTTCCTTCATGATGT-TGTCAGTATCATACGATAAAGTAAGGCCTACT----------------------GATGGTTTTCT-----------------------TAGTTTCCTTGGTGCTCATCTAGGGTAAAGCCTAGAGTCCTCCTGTACATGGCTGTCTGGCACACAATGTTAAAAACACCTGAATGGCAACCAAAGGGAGCTGTGATGTGTGGGGGTGGAGAGTGGCCCACCCTTAG-GGAAGCGTAGAGCAAGCAGG--AAGCAGGAGAATCCCAGTACAGCTGGCCA-GATTCTGAG-TCTTCACTTTGAACATCTCTTT-----CTACTCTTCTTAGCCATGCATGGGAAAAGCTTTCATAAGTACTAATAATGATATTTTTGAAATATACTGTGGCATGTCTATTCCAAACTCAATTTGTTTTTAACTAGGTTTCCTATTTTGAGATCTACTTGGACAAAATAAGGGACTTACTTGATGGTAAGT--AACCTCAGTGCTTGTCCTTTATCTATTCTGTAACCAATAAAAGTCC---------------AGGGAGGTTGAAATGATTTATTGCATTTCTGCTTAAGGAATTAATGAAAATTTATAGAAGTACTCTATTGCCTTCAGGGTATATGTTCATTCTCAGCCACGGCTTAAATTTGCATATTGCAAAGAGATTAGATTTGCCTGTCCTTTGTAACAGACTTCCATCTTTCCTCCAATA--GAGTCTTTAACTTGTCCTTTCTTCTTTGCATGCTGTCATTCTCATCTCTTATAGTATCCAAGACCAACTTGGCTGTTCATGAAGATAAAAACAGAGTCCCGTATGTAAAGGTATGAGGAAGACTTGATTGGTGATACAATTAATTTATCTCCAGTTTCTGTAATAATAATTATTATATAAGATGCTCAGAATATTATCTGTAAAGAGCATATAAGTATTTAATCAGGCTCCTTAAGTTCAATATTCATCTGGTTTTAAAAA----------TTGACATTTACCATCTCCAATTGTACCTTT-------------------CCTTTATG-ACGTTA-----------------TTATTTAAATATTGTCATTTAATATA----ATTCACATTT i calJac3.chr6 C 0 C 0 s mm10.chr2 49692610 1642 + 182113224 ttt-----cCATTTTGCATATCTTCCTATT----TTGCACAGGTGCTTATGAGTATGGGGGAAAT-----TTTATCTGGGAGGAAAGAGTCTGATATAGGC--AGTGTGTAAAATCCTGGAAAGA-ATTTTTCACA-TCTCAAAGACTAACAGCTTCATTTGCCAG--------ATTGAGGC-------------CATATGTACATTAGATTCCTCAGAACTCATTCTTAGTTTAAGCA-----------TCGCATTAGTTCAGCTATCAGACCAGTCACCCGGG-AATTCAGACGCTGATT-CTGGGTTCTGGTGTCGGAGGCTCTGATGCAGTGGAACTGTGGTCGTTTCCAGGGCTCCGTGCTTCTG----------TAGCTGATACTGATATATGTGGGGT--CGGCTGAAGCTTAAGAACGATTATTCAGAAGGCTTCCTTTTCCTTACACAGTCTAATC-ATCttttgtttggtttttgagaaaaaatttcttctgtagccccagctgaccttagattcacaacaaccctctcactcagccttcttatctgggacataggcatagctaccacacctggcCAATAGTCTTTATTAAACCACATTTGTTCCAGTCCATCACAGACTCCAAACCTGGTGTCTTCATCAGTACCTTCTCAGGTACCTGTCTGAACTCCTGTTGTTCCAAGCAT-----CCTTAGCCTC-TCCG----TCATGCAC-TGTTCCTGTGGGT--------------CTGACGAGGC-TGT-GGCATCATGCAGCTGGGTGAAGTCTGCTATGTTTGACCAACACTTGTTTAGGATGCTTTCTCTTATGGCTGTTACCACACATGGACATGGGCTTGATATTCAGCCAAGGCTAAACTTAG-GTTCTCTTGTAAGAGGCTATCTAGCAGCTGATATAGGGAACACCTGG-----GACCAGAGGAGTC--AGAAGTGTAGAGCTAGAGAATGGTCCATGGTTGGCAGATGGGTTGGTCACAGTGGCCAAGCAAGAGGAACACACGAGGGGTGCCTGCGGCTCTGTGCTCAGGACTCTGACCTTTCCCTCGGCGTTCCCTCTTCTCAGCCACAGA----GAAAGCTTTCATGAGT-TTGATAGTGATGGTTTTAAAACATGGTATGGTGTTTCTATTTCAATTTCAATTTTTCTTTATCTAGGTTTCCTATTTTGAGATCTACTTGGACAAAATAAGGGACTTGCTTGATGGTGAGTTCCACCTGAATGCAT----TGTGCTTGCTCTGTAGT----TGAAGTCCGGGGTGGGGGTGGGGGGGGGGGTTGAGATGCGTTAGCATGCTTCTGCCTGGACAGCTGATGAAAATGTAGAGTGATGT----TTGCCTTCAGGCTGTGTGCTC-TTCCCAGCCACAGCTTAAACTTGC------------------------CTCTCGTCTGTAACCA----TAGCTATTCTTGGAGCACAGGGTTTTTAACTTCCCTTTCCTTCTTTGCATGCCATCATTTTCACCACCA-CAGTGTCCAAGACCAACTTGGCAGTTCATGAAGACAAAAACAGAGTCCCCTATGTAAAGGTATGC-AAAGACTTGG--GGCAATGCAGCTAACTTTTCTCTGGTCTGTG------CAAATACTGCATGAGATG-------------CTATAAAGAGTATCCAAAGGCATAGT--------TTATCTATAACATTGATATAAGTATAAAAAACCCCAACAGCCAGTATTTAGGTTCTTCAACTGTAGCTTT-------------------CCTGTATGTAAatta-----------------tt--------------a-ttattatt----attattattT i mm10.chr2 I 792 I 102 s canFam3.chr19 50602068 1613 + 53741614 CTTAACAACTTGTTTATCCATTCCTTTGTGTGGGTTTCAAAA--ACCCATGAACACGAGAGAAAGAAAAGTTGAAGTGGGAGGTAGAAGGCAGGTGtagacaaagagtgcaggatcctagagaga-atttttgacc-tcatcaagtccagtggcatcattcggcagatgggaaagccaaggccTGTAGTCCTGGTTACATGTGAATTAAACCCCCACGATCACATGTGCAGTTAAAGTTTTTTTTTTTTTTTTTG-GATGTCAGCTGCCCTAAGAA-CGACCAGGGAATttagaagcagattccttggt-----tcttggaggttctgattcgggaggcctgcagtagggttcacgactctgcagtttcagcagaggctgtgggtgatgctgatgcctgcgaggctgggcctgggctcgga----gggtcactgGAAGGCTTCCTTCCCCTCTCACAGTCTGGCCTGTCTCTCACTAAATC---------------------------------------------------TCATTTTGTTCAAA--CCCTTCCTGG-----------ACTCCCCAAAGCTGGGCA-------------------------------CCGTCAG------------------------TAGCTCTCCCCCAGTTGCCCT--TGAGCTCTTGCAGCTCCAAGCCGACTGTCCTTGTCCCAGTCCCCACTTCCTTCATGTGACTGTTTGGACCTGGTCTGGTCTGC----TGACCCGTGTCAACGTCACGC-ACGAGGAGAGGCATCCCGACTGGGACAGCCACTCGCCAAGAACGTTTTCTGTCCCGGCCTTTGTCCTGCCTGGAAGTGTGCTTGGTGCTCAGCGAGGGCGAGAGGGAGAGTCCTCCCGTGAG----TGGCTG------------AGGAGCGCCGA---GTCTGCCGATGGG--CTGTGACG---GCGGCTGTAGTGCGGCC--------G-GAGAGTGGGGAGCGGCCGGG--------------CTCTGCCGCG------G-GCCTCGGGA-CGCCCGATTCGCGCCCCCTCGC-----TCGCTCGTCCTCGCTGCG-GCGCCGCCGGCTGTCAGGAGCCCCGATAAGGCTGTTTTTCAGACACAGCGCGGCATTTCTGCTTCAGACTCCGTTTGTTTTTATCTAGGTTTCCTATTTTGAGATCTACTTGGACAAAATCAGGGACTTACTTGATGGTGAGT--AACCTGAGTGCTTGTCCTCTGGTCGTTCCTTAAC----TAGGGCCC---------------GGGGAGGTTGAAGTGATCCACGGCACTTCTGCGTAAGGGGCCCATGAAAATCTGTGGAGCCGCTTTACTGCGTTCACGCC-CCCGCTTACTCTCCGCCAGGGCTTAACCCTCCGTATGGCAAAGACATTAGAGTTGCCTGTGTCCGGTAACAA-TTTCTCTTTTTCCTTCAATACAGAATCTTTAACTTCTCTTTTCTCCTCCGCATGCCGTCAT-----CGTTCT-CAGTATCCAAGACGAACCTGGCTGTTCACGAAGATAAGAACAGAGTCCCGTACGTGAAGGTATGAGGAAGACTTGA----TGGTGCGGTTGACTTCTCTCCCGTCTCTGTCGTCACAATAGTTACAGAATATGCCCAGAATATTACCTGTACGGTGTATGTAGGTGTTTCGTCGTGTTCCTTACATTTACTATTTATCTGGTTA-AAAAA----------TAGACGTTTAGTTTCTTCAGTTGTATCTCTATGTGAATCTAACACAGACGTCTAATG-GCATGAGGTAAGAAGTGGAGAAGTG--------------AACAGATATTGGTCATTCACACGC i canFam3.chr19 C 0 C 0 a score=2199627.000000 s hg38.chr2_GL582966v2_alt 8138 588 + 96131 AAAGAGATTTTGATATTGAGTGCAACTGTTTTTACTTTGCAGT-----AACGCCTATTATAGCATTATCTGTGGAACATCAAAGTAGCTAATATTGGTGGCCATGATCATAAATAAATAAAGATAGAAGGCAAAGCAAAACTTCATCCATTTCTTCTTCTCTCATTGATTTTCTTCTTTGATTTTCTGTCTTCTTAAAGTGTTGCTGTTCAGTATGAATATGTACTCAAAAACCTAGGAAAATTTGACAGTTCTTTTTTTGGTTTACGTCTATATTTCCTAG----GGCTTGCTCAGACTTCTCTTTAATGTAGAATTCAAGCCCTGGGCAAGGAGGAAAAGTTGTTGGATCGATATTTCAGCCTTTCTATTTATCTGCACCTCTAGAAGATAAACAGGAAAATG-TTTCAGCCTTTCAAAATATTGTTGCTTTTCAACTCTTTCAGTGGTGAACCTGAACTGATT----CTCTTCCAGGGGTGCACTGAGCGGTTTGTGTCGAGCCCTGAGGAAGTCATGGATGTAATAGATGAAGGCAAAGCAAACCGACACGTGGCTGTGACAAGTAAGCAT------------------GGTGGGGGTGTTTCCTCCCCTGCAGCT s panTro4.chr2B 153129541 584 + 247518478 AAAGAGATTTCGATATTGAGTGCAATTGTTTTTACTTTGCAGT-----AACGCCTATTATAGCATTATCTGTGGAACATCAAAGTA----ATATTGGTGGCCATGATCATGAATAAATAAAGATAGAAGGCAAAGCAAAACTTCATCCATTTCTTCTTCTCTCATTGATTTTCTTCTTTGATTTTCTGTCTTCTTAAAGTGTTGCTGTTCAGTATGAATATGTACTCAAAAACCTAGGAAAATTTGACAGTTCTTTTTTTGGTTTACTTCTATATTTCCTAG----GGCTTGCTCAGACTTCTCTTTAATGTAGAATTCAAGCCCTGGGCAAGGAGGAAAAGTTGTTGGATCGATATTTCAGCCTTTCTATTTATCTGCACCTCTAGAAGATAAACAGGAAAATG-TTTCAGCCTTTCAAAATATTGTTGCTTTTCAACTCTTTCAGTGGTGAACCTGAACTGATT----CTCTTCCAGGGATGCACTGAGCGGTTTGTGTCAAGCCCCGAGGAAGTCATGGATGTAATAGATGAAGGCAAAGCAAACCGACACGTGGCTGTGACAAGTAAGCAT------------------GGTGGGGGTGTTTCCTCCCCTGCAGCT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38332589 588 + 135000294 AAAGAGATTTTGATATTGAGTGCAATTGTTTTTACTTTGCAGT-----AACGCCTATTATAGCATTATCTGTGGAACATCAAAGTATCTAATATTGGTGGCCATAATCATAAATAAATAAAGATAGAAGGCAAAGCAAAACTTCATCCATTTCTTCTTCTCTCATTGATTTTCTTCTTTGATTTTCTGTCTTCTTAAAGTGTTGCTGTTCAGTATGAATATGTACTCAAAAACCTAGGAAAATTTGACAATTCTTTTTTTGGTTTACTTCTATATTTCCTAG----GGCTTTCTCAGACTTCTCTTTAATGTAGAATTCAAGCCCTGGGCAAGAAGGAAAAGTTGTTGGATCGATATTTCAGTCTTTCTATTTATCTGCACCTCTAGAAGATAAACAGGAACATG-TTTCAGCCTTTCAAAATATTGTTGCTTTTCAACTCTTTTAATGGTGAACCTGAACTGATT----CTCTTCCAGGGGTGCACTGAGCGGTTTGTGTCGAGCCCCGAGGAAGTCATGGATGTAATAGATGAAGGCAAAGCAAACCGACACGTGGCTGTGACAAGTAAGCAT------------------GGTGGGGGTGTTTCCTCCCCTGCAGCT i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82283679 588 - 85365473 AAAGAGGCTTTGGTATTGAGTGCAATTGTTTTTACTTTGCAGT-----AATGCCTATTATAGCATTATCTGTGGAACATCAAAGTATCTAATATTGGTGGCCATAATCATAAATAAATAAAGATAGAAGGCAAAGCAAAACTTCATCCATTTCTTCTTCTCTCATTGATTTTCTTCTTGGATTTTCTGTCTTCTTAAACTATTGCTGTTGAGTATGAATATGTACTCAAAAACCTAGGAAAATTTGACAATTCTTTTTTTGGTTTACTTCTATATTTCCTAG----GGCTTGCTCAGACTTCTCTTTAATGTGGAATTCAAGCCCTGGGCAAGGAGGAAAAGTTGTTGGATCGATATTTCAGCCTTTCTAGTTATCTGCACCTCTAGAAGATAAACAGGAAAATG-TTTCAGCCTTTCAAAATATTGTTGCTTTTCAACTCTTTTAATGGTGAACTCGAACTGATT----CTCTTCCAGGGCTGCACTGAGCGGTTTGTGTCAAGCCCCGAGGAAGTCATGGATGTAATAGATGAAGGCAAAGCAAACCGACACGTGGCTGTGACAAGTAAGCAT------------------GGTGGGGGTGTTTCCTCCCCTGCAGCT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11897137 589 + 106825570 AAAGAGGCTTTGGTATTGAGTGCAATTGTTTTTACTTTGCAGTTTG-AAACGCCTATTATGGCATTATCTGTGGAACATCAAAGTATCTATTATTGGCGGCCATCGTGGTAAATAAATAAAGATAGAAGGCAAAGCAAAACTTCATCCAT---TTCTTCTCTCATTGATTTTCTTCTTTGATTTTCTGTCTTCTTAAAGTGTTGCTGTTGAGTATGAATATGTACTCAGAAACCTAGGAAAACTTGACAATTCTTTTTTTGGTTTACTTCTGTACCTCCTAG----GGCTTGCTCAGACTTCTCTTTAATGTAGAATTCAAGCCCTGGGCAAGGAGGAGAAGTTGTTAGATCGATATTTCAGCTTTTCTATTTATCTGCACCTCTAGAAGATAAACAGGAAAATG-TTCCAGCCTTTCAAAATATCGTTGCTTTTCAACTCTTTTAATGTTGAACCTGAACTGATT----CTCTTCCAGGGGTGCACTGAGCGGTTTGTGTCGAGCCCTGAGGAAGTCATGGATGTAATAGATGAAGGCAAAGCAAACCGACACGTGGCTGTGACAAGTAAGCAT------------------GGTGGGGGTGTTTCCTCCCCTGTAGCT i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37601427 589 + 132586672 AAAGAGGCTTTGGTATTGAGTGCAATTGTTTTTACTTTGCAGTTGG-AAACGCCTATTATGGCATTATCTGTGGAACATCAAAGTATCTATTATTGGCGGTCATCGTGGTAAATAAATAAAGATAGAAGGCAAAGCAAAACTTCATCCAT---TTCTTCTCTCATTGATTTTCTTCTTTGATTTTCTGTCTTCTTAAAGTGTTGCTGTTGAGTATGAATATGTACTCAGAAACCTAGGAAAACTTGACAATTCTTTTTTTGGTTTACTTCTGTACTTCCTAG----GGCTTGCTCAGACTTCTCTTTAATGTAGAATTCAAGCCCTGGGCAAGGAGGAGAAGTTGTTAGATCGATATTTCAGCTTTTCTATTTATCTGCACCTCTAGAAGATAAACAGGAAAATG-TTCCAGCCTTTCAAAATATCGTTGCTTTTCAACTCTTTTAATGTTGAACCTGAACTGATT----CTCTTCCAGGGGTGCACTGAGCGGTTTGTGTCGAGCCCTGAGGAAGTCATGGATGTAATAGATGAAGGCAAAGCAAACCGACACGTGGCTGTGACAAGTAAGCAT------------------GGTGGGGGTGTTTCCTCCCCTGTAGCT i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11258757 589 + 104110932 AAAGAGGCTTAGGTATTGAGTGCAATTGTTTTTACTTTGCAGTTTG-AAACGCCTATTATGGCATTATCTGTGGAACATCAAAGTATCTATTATTGGTGGCCATTgtggtaaataaataaagatagaaGGCAAAGCAAAACttcatccat---ttcttctctcattgattttcttctttgattttctgtcttcttaaaGTGTTGCTGTTGAGTATGAATATGTACTCAGAAACCTAGGAAAACTTGACAATTCtttttttGGTTTACTTCTGTACTTCCTAG----GGCTTGCTCAGACTTCTCTTTAATGTAGAATTCAAGCCCTGGGCAAGGAGGAGAAGTTGTTAGATCGATATTTCAGCTTTTCTATTTATCTGCACCTCTAGAAGATAAACAGGAAAATG-TTCCAGCCTTTCAAAATATTGTTGCTTTTCAACTCTTTTAATGTTGAACCTGAACTGATT----CTCTTCCAGGGGTGCACTGAGCGGTTTGTGTCGAGCCCTGAGGAAGTCATGGATGTAATAGATGAAGGCAAAGCAAACCGACACGTGGCTGTGACAAGTAAGCAT------------------GGTGGGGGTGTTTCCTCTCCTGTAGCT i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34353182 589 + 128595539 AAAGAGGCTTTGGTATTGAGTGCAATTGTTTTTACTTTGCAGTTGG-AAACGCCTATTATAGCATTATCTGTGGAACATCAAAGTATCTATTATTGGCAGCCATCGTGGTAAATAAATAAAGATAGAAGGCAAAGCAAAACTTCATCCAT---TTCTTCTCTCATTGATTTTCTTCTTTGATTTTCTGTCTTCTTAAAGTGTTGCTGTTGAGTATGAATATGTACTCAGAAACCTAGGAAAACTTGACAATTCTTTTTCTGGTTTACTTCTGTACTTCCTAG----GGCTTGCTCAGACTTCTCTTTAATGTAGAATTCAAGCCCTGGGCAAGGAGGAGAAGTTGTTAGATCGATATTTCAGCTTTTCTATTTATCTGCACCTCTAGAAGATAAACAGGAAAATG-TTCCAGCCTTTCAAAATATCGTTGCTTTTCAAATCTTTTAATGTTGAACCTGAACTGATT----CTCTTCCAGGGGTGCACTGAGCGGTTTGTGTCGAGCCCTGAGGAAGTCATGGATGTAATAGATGAAGGCAAAGCAAACCGACACGTGGCTGTGACAAGTAAGCAT------------------GGTGGGGGTGTTTCCTCCCCTGTAGCT i chlSab2.chr10 C 0 I 174 s calJac3.chr6 87840441 593 - 158406734 AAAGGGGCTTTGGTATTGAGTGCAATTATTTATATGTTGCAGTTGG-AAATGCCTATTATAGCATTATTTGTGAAGCTTCAAAGTGTCTATTATCAATGGCCATAATGGTAAATAAATAAAGATAGAAAGCACAGCAAAACTTCATCCATGTCTTCTTCTCTCATTGATTTTCTTCTTTGATTTTCTGTCTTCTTAAAGTGTTGCTGTTGACTATGACTGTTTACCCAAAAACCTATGAAAATTTGACAGTTCATTTTTTGGTTTACTTCTAGATTTCCTAG----GGCTTGCTCAGGCTTCTCTTTAATGTAGAATTCAAGCCCTGGGCAAGGAGGAAAAGTTGTTGGATCGATATTTCAGCCTTTCTATTTATCCACACCTCTAGAAGATAAACTGGAAAATGCTCCCAGTCTTTCAAACTGTTGTTGCTTTTCGGCTCTTCTAATGGTGAACCTGAACTGATT----CTCTTCCAGGGGTGCACCGAGCGATTTGTGTCGAGCCCTGAGGAAGTCATGGATGTGATAGATGAAGGCAAAGCAAACCGACATGTGGCTGTGACAAGTAAGCAC------------------AGTGGTGCTGTTTCCTCCCTTGTAGCT i calJac3.chr6 C 0 C 0 s mm10.chr2 49694354 554 + 182113224 AAAGAGGTTTTGGGATTGAATGCAGTGGTGTATGCTCTGAACCTCACCGAAGCCTATTGTGGCCTTGTCTATTG-----------------TGCTG--------------AAATGATGAATGATGGAGGGTGAGGCAGTACATTCT-CATTTCCTCCCCTCTCATAAGTTTTCTTCTTTTAATTTCTGGCTCCTGAAAGCATTGCTTTAGGGTATGAACAGGAGCTTAAAAA----------------------------GCATTTCTTCCAGCTTTCCCAGGGCTGGCTGGCTCATACTTCTCTTTAATGTAGAATCCAAGCCCCAGGCAAGGGGGAAGCACTGTTGG-TCAGCATCATTGCCTTTCTGTTTAGCTGTACCTTTAGGGGGAGAA----AGGATG-CTTAGCTGCTTTGAGATGCTGTTGCTTTGCAACCGCTGTAATGGCCAACCTGCCCTACCTTTGACTCTTGCAGGGGTGCACCGAGAGGTTTGTGTCAAGCCCGGAGGAGGTCATGGATGTGATCGATGAGGGCAAAGCAAACCGACACGTGGCTGTGACAAGTAAGTGTGTGTGTGTGTGTGTGGGGGGGGGAGGTGATGTCTATGCTGTTACA i mm10.chr2 I 102 C 0 s canFam3.chr19 50603681 555 + 53741614 ACAGAGGCTTTGATAGTGGAAGTGATTGTTGGTGCTTTGCAGTTAGGGGAAGCCCACCATGGCATTATGTCTAGAACTTCAAAGAGTCTAA-GTTGGTGGCC-----------------AGAATGAAAGGCAAA-CACAATCTCATCCATTTCCTTTTCTGTCCCTGGTTTTCTTT----ATTTTCTATTTC-------TATTGCTGTTGAGTACACACAGGTATTTAAGAATCTAGGAAAAGTCGGCATTTCTTTTAT-GGCTTACTTCTGGGTTTCCGAG----GGTTGGCTCAGACTGCTCTGTGAGGTGGAGCACGTGCCGTCGGCGGGGAGGACGAGCCGTCGGACCAGCACGGCAGCCTTTCTCTTCATCTGCGCCTCTAGAGAAGAG---GGAAAATG-TTTAGCTCCTTCAAAGGG-AGTCGCTTTCTAG--TTTCTGATGGTGAAGCTGAACTGCTT----CTTTTCCAGGGGTGTACCGAGCGGTTTGTGTCCAGCCCCGAGGAAGTCATGGATGTGATAGATGAAGGCAAAGCAAACCGACACGTGGCTGTAACAAGTAAGCCT------------------GGT-GTGGCgtttcctcccctgtgact i canFam3.chr19 C 0 C 0 a score=2277166.000000 s hg38.chr2_GL582966v2_alt 8726 704 + 96131 TGGGAGACAGATATCTGCCCACCAACCGAGG-------GGGGTGGGGAATTAGGTACAAATGAAAGAATGCATGGGAAGGTGATTAAAGAGCAGT-GCTCGGACACAGACGCCAGGGTATGTGTGCTATGAGTATGTCTAGGCA-GTCATGGGAAAGGGTGCCTTCTGCTGTCCACAGGACTCTGAGGTCTTGGAGATATTGGGTGAGACTTACTGGACCCTGATAACAGCCTAAGCCTGAACATTAGGAAAAATAAACAACCAGCCAACCAAAGGGAGGGAAAGAGTAAGCTCATCAGTTTATTTATTTTGATCATGTTATTGTTCAGGTT-A---AAAAAAAG-------------------------------------------------------------------------------------------TTCCAAACCAACAAATTCTATAATATGTTGCAGTCACACACATGGAAATAAACCATGTTGGATTTCTGCCTTCTGTAAAAAAGAAAAAGAAAGGGAAGAAGGAAGTCAGAAAGCAGAGCCAGGAGCTTTAGGGAAAGCCTT----CCGA---TATGTTACTAGCAGACACATTCAGATCGGCTCATTGGCTCTGCAGTTCCTTCCTCAGTATGTTCATTGCATCTGAGGGAAGCAGTGCATATG-GGATTTGGGCAGCAGAGGATCCGTGAAAA-AAGACAGTTGTCTATC-----TTATTAAGAGGGATGTGGACAAATGACAGTGAGTtcatatgaacagaagctg-agagaactaagggtttatagcttgcatgagggaaaaa-a s panTro4.chr2B 153130125 704 + 247518478 TGGGAGACAGATGTCTGCCCACCAACCGAGG-------GGGGTGGGGAATTAGGTACAAATGAAAGAATGCATGGGAAGGTGATTAAAGAGCAGT-GCTCGGACACAGACGCCAGGGTATGTGTGCTATGAGTATGTCTAGGCA-GTCATGGGAAAGGGTGCCTTCTGCTGTCCACAGGACTCTGAGGTCTTGGAGATATTGGGTGAGACTTACTGGATCCTGATAACAGCCTAAGCCTGAACATTAGGAAAAATAAACAACCAGCCAACCAAAGGGAGGGAAAGAGTAAGCTCATCAGTTTATTTATTTTGATCATGTTATTGTTCAGGTT-A---AAAAAAAG-------------------------------------------------------------------------------------------TTCCAAACCAACAAATTCTATAATATGTTGTAGTCACACACATGGAAATAAACCATGTTGGATTTCTGCCTTCTGTAAAAAAGAAAAAGAAAGGGAAGAAGGAAGTCAGAAAGCAGAGCCAGGAGCTTTAGGGAAAGCCTT----CCGA---TATGTTACTAGCAGACACATTCAGATTGGCTCATTAGCTCTGCAGTTCCTTCCTCAGTATGTTCATTGCATCTCAGGGAAGCAGTGCATATG-GGATTTGGGCAGCAGAGGGTCCGTGAAAA-AAGACAGTTGTCTATC-----TTATTAAGAGGGATGTGGACAAATGACAGTGAGTtcatatgaacagaagctg-agagaactaagggtttatagcttgcgtgagggaaaaa-a i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38333177 701 + 135000294 TGGGAGACAGATGTCTGCCCACCAACCGAGT-------TGGGTGGGGAATGAGGTACAAATGAAAGAATGCATGGGAAGGTGATTAGAGAGCAGT-GCTCGGACACAGACGCCAGGGTATGTGTGCTATGAGTGTGTCTAGGCA-GTCATGGGAAAGGGTGCCTTCTGCTGTCCACAGGACTGTGAGGTCTTGAAGATATTGGGTGAGACTTACTGGACCCTGATAACAGCCTAAGCCTGAACATTAGGAAAAATAAACAACCAGCCAACCAAAGGGAGGGAAAGAGTAAGCTCCTCAGTTTATTTATTTTGATCGTGTTATTGTTCAGGTTAA---AAAAAAAG-------------------------------------------------------------------------------------------TTCCAAACCAACAAATTCTATAATACGTTGTGGTCACACACATGGAAATAAACCATGTTAGATTTCTGCCTTCTGTAAAAAAGAA----AAAGGAAAGAAGGAAGTCAGAAAGCAGAGCCAGGAGCTTTAGGGAAAGCCTT----CCGA---TGTGTTACTAGCAGACACATTCAGATCGGCTCATTGGCTCTGCACTTCCTTCCTCAGTATGTTCATTGCATCTCAGGGAAGCAGTGCATATG-GGATTTGGGCAGCAGAGGGTCCGTGAAAA-AAGAGAGTTGTCTATC-----TTATTAAGAGGGATGTGGACAAATGACAGTGAGTtcatatgaacagaagctg-agagaactaagggtttatagcttgcgtgagggaaaaa-a i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82284267 702 - 85365473 TGGGAGACAGATGTCTGCCCACCGACCGAGG-------GGGGTGGGGAATGAGGTGCAAATGAAAGAATGCACGGGAAGGTGATTAGAGAGCGGT-GCTCGGACACAGACGCCAGGGTATGTGTGCTATGAGTGTGTCTAGGCA-GTCATGGGAAAGGGTGCCTTCTGCTGTGCACAGGACTCTGAGGTCTTGAAGATGTTGGGTGAGACTTACTGGACCCTGATAACAGCCTAAGCCTGAACATTAGGAAAAATAATCATCCAGCCAACCAAAGGGAGGGAAAGAGTAAGCTCCTCAGTTTATTTATTCTGATCAAGTTATGGTTCAGGGT-G---AACAATAA-------------------------------------------------------------------------------------------TTCCAAACCAACAAATTCTATGCTACGTTGCAGTCACACACATGGAAATAAACCATGTTAGATTTCTGCCATCTGTAaaagagaaaaagaaagggaagaaggaagtcagaaagcagaGCCAGGAGCTTTAGGGAAAGCTTT----CTGA---TGTGTTACTAGCAG--ACATTCAGATCGGCTCATTGGCTCTGCAGTTCCTTCCTCAGTATGTTCATTGCATCCCAGGGAAGCAGTGCATATG-GGATTCGGGCCGCAGAGGGTCTGTGAAAA-AAGAGAGTTGTCTATC-----TTATTAAGAGGGATGTGGACAAATGACAGTGAGTtcatatgaacagaagctg-agagaactaagggtttatagcttgcgtgagggaaaaa-a i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11897726 702 + 106825570 TGGGAGACAGATGTCTGCCTACTAACCGAGG-------GAGGTGGGGAATGAGGCACAAATGAAAGAATGCATGGGAAGGTGGTTAGAGAGCAGT-GCTCGGACACACACGCTAGGGTATGTGTGCTATGAGTGTGTCTAGGCA-GTCATGGGAAAGGGTGCCGTCTGCTGTCCACAGGGCTCTGAGGTCTTGGAGATGTTGGATGAGACTTACTGGACCCTGATAACAGCCTAAGCCTGAACGTTAGGAAAATTAAACAACCAGCCAACCAAAGGGAGGGAAAGAGTAAACTCCTCAGTTTGTTTATTTGAATCATGTTATTGTTCAGGTT-A---AAAAAAA--------------------------------------------------------------------------------------------TTCCAAGACAACAAATTCTATAATACGTTGCAGTCACACACGTGGAAATAAACCATGTTAGATTTCTGCCCTCTGTAAACAAGAAAAAGAAAGGGAAGAAGGAAGTCAGAAAGCAGAGCCTGGAGCTTTAGGGAAAGCCTT----CCGA---CGTGTTACTAGCAGACACATTCAAATTGGCTCATTGACTCTGCAGTTCCTTCCTCAGTATATTCATTGCGTCTCAGGGAAGCAGTGCAAATG-GGATTCGGGCAGCAGAGGGTCCGTGAAAA-ATGAGAGTTGTCTATG-----CTATTAAGAGGGATGTGGACAAATGAGAGTGAGgtcacataaacagaagctg-agagaactaagggtttatagcttgcgtgagggaaaaa-- i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37602016 793 + 132586672 TGGGAGACAGATGTCTGCCTACCAACCGAGG-------GAGGTGGGGAATGAGGCACAAATGAAAGAATGCATGGGAAGATGGTTAGAGAACAGT-GCTCGGACATACACGCTAGGGTATGTGTGCTATGAGTGTGTCTAGGCA-GTCATGGGAAAGGGTGCCTTCTGCTGTCCACGGGGCTCTGAGGTCTTGGAGATGTTGGGTGAGACTTACTGGACCCTGATAACAGCCTAAGCCTCAACATTAGGAAAAATAAACAACCAGCCAACCAAAGGGAGGGAAAGAGTAAACTCCTCAGTTTGTTTATTTTAATCATGTTATTGTTCAGGTT-A---AAAAAAAATTCCTggccgggcgcggtggctcaagcctgtaatcccagcactttgggaggcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCCAAACCAACAAATTCTATAATACGTTGCAGTCACACACGTGGAAATAAACCATGTTAGATTTCTGCCCTCTGTAACCAAGAAAAAGAAAGGGAAGAAGGAAGTCAGAAAGCAGAGCCAGGAGCTTTAGGGAAAGCCTT----CCGA---CGTGTTACTAGCAGACACATTCAGATCGGCTCATTGACCCTGCAGTTCCTTCCTCAGTATATTCATTGCGTCTCAGGGAAGCAGTGCAAATG-GGATTCGGGCAGCAGAGGGTCCGTGAAAA-ATGAGAGTTGTCTATG-----CTATTAAGAGGGATGTGGACAAATGAGAGTGAGTTTACATAAACAGAAGCTG--GAgaactaagggtttatagcttgcgtgagggaaaaa-- i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11259346 703 + 104110932 TGGGAGACAGATGTCTGCCTACCAACCGAGG-------GAGGTGGAGAATGAGGCACAAATGAAAGAATGCCTGGGAAGGTGGTTAGAGAGCAGT-GCTCGGACACACACGCTAGGGTATGTGTGCTATGAGTGTGTCTAGGCA-GTCATGGGAAAGGGTGCCGTCTGCTGTCCACAGGGCTCTGAGGTCTTGGAGATGTTGGGTGAGACTTACTGGACCCTGATAACAGCCTAAGCCTGAACATTAGGAAAATTAAACAACCAGCCAACCAAAGGGAGGGAAAGAGTAAACTCctcagtttgtttattttaatcatgttattgttcaggtt-a---aaaaaaa--------------------------------------------------------------------------------------------ttccaaaccaACAAATTCTATAATACGTTGCAGGCACACACGTGGAAATAAACCATGTTAGATTTCTGCCCTCtgtaaacaagaaaaagaaagggaagaaggaagtcagaaagcagagccaggagctTTAGGGAAAGCCTT----CCGA---CGTGTTACTAGCAGACACATTCAGATTGGCTCATTGACTCTGCCGTTCCTTCCTCAGTATATTCATTGCGTCTCAGGGAAGCAGTGCAAATG-GGATTCGGGCAGCAGAGGGTCCGTGAAAA-ATGAGAGTTGTCTATG-----CTATTAAGAGGGATGTGGACAAATGAGAGTGAGTTCACATAAACAGAAGCTG-AGAGAACTAAGGGTTTATAGCTTGCGTGAGGGaaaaaa- i papAnu2.chr12 C 0 I 53 s chlSab2.chr10 34353945 702 + 128595539 TGGGAGACAGATGTCTGCCTACCAACCGAGG-------GAAGTGGGGAATGAGGCACAAATGAAAGAATGCATGGGAAGGTGGTTAGAGAGCAGT-GCTTGGACACACACGCTAGGGTATGTGTGCTATGAGTGTGTCTAGGCA-GTCATGGGAAAGGGTGCCTTCTGCTGTCCACAGGGCTCTGAGGTCTTGGAGATGTTAGGTGAGACTTACTGGACCCTGATAACAGCCTAAGCCTGAACATTAGGAAAAATAAACAACCAGCCAACCAAAGGGAGGGAAAGAGTAAACTCCTCAGTTTGTTTATTTTAATCATGTTATTGTTCAGGTT-A---AAAAAAA--------------------------------------------------------------------------------------------TTCCAAACCAACAAATTCTATAATACGTTGCAGTCACACACGTGGAAATAAACCATGTTAGATTTCTGCCCTCTGTAAACAAGAAAAAGAAAGGGAAGAAGGAAGTCAGAAAGCAGAGCCAGGAGCTTTAGGGAAAGCCTT----CCGA---CGTGTTACTAGCAGACACATTCAGATCGGCTCATTGACTCTGCAGTTCCTTCCTCAGTATATTCATTGCGTCTCAGGGAAGCAGTGCAAATG-GGATTTGGGCAGCAGAGGGTCCGTGAAAA-ATGAGAGTTGTCTATG-----CTATTAAGAGGGATGTGGACAAATGAGAGTGAGTtcacataaacagaagctg-agagaactaagggtttatagctcgcgtgagggaaaaa-- i chlSab2.chr10 I 174 C 0 s calJac3.chr6 87841034 709 - 158406734 TGGGAGACAGATGTCTGCCCACTGACCGGGGCCAGGGTGCGGTGGGGGATGAGGTACAAAGGAAAGAATGCATGGAAAAGTGGTTAGAGAGCAGT-GCTCGGACACAGACGCCAGGGTATGTGAGCTCTGAGTGTGTCTAGGCA-GTCATAGGAAAGGGTGCCTTCTGCTGTCCACAGGGC--TGAGGTCTTGGAGATGTTGAGTGAGACTTACTGGACCCCCATAATGGCCTAAGCCTGCACATTAGGAAAGATAAACAACCAGCCAACCAAAGGGAGGGAAAGAGTAAGCGCCTCAGTTTATTTATTTTAATCATGTTATTGTTCAGGTT-AATTAAAAAAAA-------------------------------------------------------------------------------------------TTTCAAACCAATAAATTCTTTAATACGTTGCAGTCACACTCGTGGAAAGAAGCCATGTTAGATTTCTGCCCTCCATAAAAAAGAAAAAGAAAGGCAAGAAGGAAGTCAGAGAGCAGAGCCAGGAGGCTTAGGGAAAGCCTT----CCGA---TGTATTACCAACAGACACATTCAGATCGGCTCATTGGCTCTGCAGTTACTTCCTCAGTATGTTCATTGCATCTCAGGGAAGCAGTGCATATG-GGATTCGGGCAGCAGAGGGTCTGTGAAAA-GAT-GAGTTATCTATC-----TTACTAAGAGGGATGTGGACGAGTGAGAGTGAATtcatatgaacagaagctg-atggaactaagggtttatagcttgtgtaaggaaaaa--- i calJac3.chr6 C 0 C 0 s mm10.chr2 49694908 500 + 182113224 TAGCACGGCAGTATCTGCCCTCTGTGCAGGA-------CAGCTGGGTGACGAGG-------------ATGTGAGGGAAGGTAG-CAGAGAGCAGC-GAGCAGGCAGAGC--CCAGGCCCTGTGCTGCGTGAGTGTAT-------------------------------------GCAGCACTCTGAGGTCTTGAAGA-ATTGCCTGAGATTCCTTGGGTTCTGATCAAAGTCT--------------------------------------------------------------------------------------------------T-A---GAAAGAAA-------------------------------------------------------------------------------------------ATCCAAGTTACTAAATTCAT------------GCCAAACACAAGGAAAAACA----GTTGGGGCTCTACC-TCTGTA---GAGAGAGAATAATGCAAAGAGGGCATCAG--AGCAGAGCAGGCGGCTTCCAAGGAGTCCCTGAAGCTGG---AGAGCTCACAGCAGGCACACTCACATGAGCT------------------------AAGATGCCTGTCTCATCCCGGGGA---GCTGCACGTGTTTATCAGCAAGGCAGAGGCTCCTTAAA----------TTGACTAGCACTGTCCTTTCAGAGGGATGTGGGCAGAGGAGTGTAAGTTCACTCA-----GAGCTG-AAGGAACTAAGAATTTCAAGTTCGGAAGAGAAAAAAA-A i mm10.chr2 C 0 C 0 s canFam3.chr19 50604236 676 + 53741614 tgggataccaacgtctgcccgccccccggga-------ggg--gggggagtgggtccaaatgagatgatgtcggggaaggcgattgtaaaGCAGCAGTTCAGAAGCAGATGCGCGGG--TGTGTGCGGGGCGGGTGTCTAAGCAGGTCATGGGAA---GTGGCACCTGTTATGCAGAGGAC-------TCTCGGGAATCCTGAGTGAGGCCCGTGGGGCGCCGGTAGCACCGGGGAACTGGACACGGGGGAAA--GACCAATCAGTCACGTAAAGGGGATAAA-----AAGCTTCTAA----ATGCATTTCAGCCACATTATTGCTCAGGTT-T---AAAAAAA--------------------------------------------------------------------------------------------ATGCAAGCCAACAAATTTTGTA-----TGTCGGTCATCGGTGTGGAAAGAAACCACGTTAGATTCCTGCCCTCTGTGAAAAAGGGAAGGAAAAGCAAGGAGGAGCTCAGAAAGCACA-CTGGGGGCTTTATTAGAAGCCTT----TCGAGGCTGTGTTAGTACCAAACACATTCAGGTCAGCTTGCTCACCCTGCTCCTCCTTCCTCGGCGTGCGCA-CACATCTCTGGGAAGTGGGTCCTATG-TTGTTAGAGCAGCAGAGGTCCCTGGAAAAGATGGGGGCTGTTTGTC-----TCATCCAGAGGGATGTGGACAAATCAGAGTGAGTTTGTATGGAGAGGAGCTGAAAAGTAAAAGGGGTTTGTAGGTTGAAAGAAAGAAAA--- i canFam3.chr19 C 0 C 0 a score=721919.000000 s hg38.chr2_GL582966v2_alt 9430 271 + 96131 atctggaggagggtgtgtggacaatgtaatatatcttaccgtgttgaaggtgctgacactaagaaagagggtcagcttgttctgttccatctcaatacttagaatacccatgattgttggagctctagggaggcagatttcgacc-cctgtgaggagaactctccaacccttatagctgccccaagtgctgcctgctacctagagaggtagtgagttcactgttatgttgtaaaagagattcaggcattggtttcctgactggtctaggctc s panTro4.chr2B 153130829 271 + 247518478 atctggaggagggtgtgtggacaatgtaatgtatcttaccgtgttgaaggtgctgacactaagaaagagggtcagcttgttctgttccatctcaatgcttagaatacccatgattgttggagctctagggaggcagatttcgacc-cctgtgaggagaactctccaacccttatagctgccccaagtgctgcctgctacctagagaggtagtgagttcactgttatgttgtaaaagagattcaggtattggtttcctgactggtctaggctc i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38333878 271 + 135000294 atctggaggagggtgtgtggacaatgtaatatatcttaccatgttgaaggtgctgacactaagaaagagggtcagcttgttctgttccatctcaatgcttagaatacccatgattgttggagctctagggaggcagatttcgacc-cctgtgaggagaactctccaacccttatagctgccccaagtgctgcctgctacctagagaggtagtgagttcacagttatgttgtaaaagagattcaggcattggtttgctgactggtctaggctc i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82284969 271 - 85365473 atctggaggagggtgtgtggacaatgtaatatatcttaccgtgttgaaggtgctgacactaagaaagagggtcagcttgttctgttccatctcgatgcttagaatacccaagattgttggagctctagggaggcagatttcgacc-cctatgaggagaactctccaacccttatagctgccccaagtgctgcctgctacctagagagatagtgagttcactgttatgttgtaaaagagattcaggtattggtttgctgactggtctaggctc i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11898428 271 + 106825570 atctagaggagggtgtgtggacgatataatatatcttaccgtgttgaaggtgctgacactaagaaagagggtcagcttgttctgttccatctcaatgcttagaatacccatgattgttggagctctagggtggcagatttcgacc-cctatgaggagaagtctccaaccattatagctgccccaagtgcagcctgctacctagtgaggtagtgagttcactgttatgttgtaaaagagattcaggcattggttggctgacTGGTCTAGACTC i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37602809 271 + 132586672 atctagaggagggtgtgtggacaatataatatatcttaccgtgttgaaggtgctgacactaagaaagagggtcagcttgttctgttccatctcaatgcttagaatacccatgattgttggagctctagggcggcagatttcgacc-cctatgaggagaactctccaaccattatagctgccccaagtgcagcctgctacctagtgaggtagtgagttcactgttatgttgtaaaagagattcaggcattggttggctgactggtctagactc i macFas5.chr12 C 0 C 0 s chlSab2.chr10 34354647 271 + 128595539 atctagaggagggtgtgtggacgatataatatatcttaccgtgttgaaggtgctgacactaagaaagagggtcagcttgttctgttccatctcaatgcttagaatacccatgattgttggagctctagggcggcagatttcgacc-cctatgaggagaactctccaaccattatagctgccccaagtgcagcctgctacctagtgaggtagtgagttcactgttatgttgtaaaagagattcaggcattggtgggctcactggtctagactc i chlSab2.chr10 C 0 I 217 s calJac3.chr6 87841743 268 - 158406734 atctggggaagggtgtgtggacaatgtaatatatcatactgggttgaaggtgctgacactaagaaagagggtcagcttgttcagttccatctcaatgcttagaacacccaggattgttggagctctaggaaggcagatttcgact-cctat---gagaattctccaacccttatagctgccccaagtgcagcctgctgtctagaggagtagtgagtttactgttatgttgtaaaagagattcagacattggttgactgacTGGTCTAGGCTC i calJac3.chr6 C 0 C 0 s mm10.chr2 49695408 213 + 182113224 AATCAGGAGAGGATGTGTG--CGCTGCAGTTCATTG----ATGCTCTGGGTTCTGATGTTGAGGAAGATG----------------------CAATG-----------------TGCTGCAG-GCTAGGCACGCAGGCTTGACCA-ACTGTCAGGA-----CTCTAAGCCTGGGAGCTGCCCCAGGAAAAGCCTGCTGCTGAGGAAGGGAGCGAA------GGTATTGTATAGAAGAGATTCAAGCAGTAGTTGG-TGGCTGGTCTAGACCC i mm10.chr2 C 0 I 13 s canFam3.chr19 50604912 236 + 53741614 ACTCGGAGGCGAACCTATGGACAGTGTAGTATTTCTTCACCTGTTCAAGCTTTG-----TAGGAA--------------------------CCAGTGGGGAAGCCACCCAGGACTATTGAAACCAT-GAGTGGCTGGTTTTAACCAACTGC---AAGAACCCTCTGCCCCCGATACTGCCCCCAAGTAAAGCCCCCCACCTGGATGGGCAGGGAGCTCCCTG-TGTGGTGTACAAGAGGTGGAAGCACCAGTTGCTTGGCTGGTCTAGCCTC i canFam3.chr19 C 0 C 0 e papAnu2.chr12 11260049 53 + 104110932 I a score=203461.000000 s hg38.chr2_GL582966v2_alt 9701 73 + 96131 tttaagtctcttctacccaagactctctgattctgtGGTCCAGAACTGTAATTCTCAACATTTTCTCTATCTG s panTro4.chr2B 153131100 73 + 247518478 tttaagtctcttctacccaagattctctgattctgtGGTCCAGAACTGTAATTCTCAACATTTTCTCTATCTG i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38334149 73 + 135000294 tttaagtctcttctacccaagactctctgattctgtGGTCCAGAAATGTAATTCTGAATATTTTCTCTATCTG i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82285240 73 - 85365473 tttaagtctcttctacccaaaactctctgattctgtGGTCCAGAACTGTAATTCTCAACATTTTCTCTATCTG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11898699 73 + 106825570 TTTAAGTGTCTTCTACCCAAGACTCTCTGATTCTGTGGTCCAGAACTGTAATTCTCAACATTTTCGCTATCTG i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37603080 73 + 132586672 tttaagtgtcttctacccaagactctctgattctgtGGTCCAGAACTGTAATTCTCAACATTTTCGCTATCTG i macFas5.chr12 C 0 C 0 s chlSab2.chr10 34355135 73 + 128595539 TTTAAGTCTCTTCTACCCAAGACTCTCTGATTCTGTGGTCCAGAAGTGTAATTCTCAACATTTTCGCTATCTG i chlSab2.chr10 I 217 C 0 s calJac3.chr6 87842011 73 - 158406734 TGTAAGTCTCTTCTACCCAACGCTCTCTGATTCTGTGGTCCAGAACTGTAATTCTCAACATTTTCTCTATCGG i calJac3.chr6 C 0 I 2 s mm10.chr2 49695634 58 + 182113224 TCTGAGGCTCCTGTG-TGAATGGGCTCCAGCTCTGTGACTCAGAAT------------CCTCTTCTACACC-- i mm10.chr2 I 13 C 0 s canFam3.chr19 50605148 71 + 53741614 CCTAG--CTCTCCCACCCAAGGCTCTGGGATTCTGTGATCCAGAACTGTAATTCTCTACCTTTTCTCTACCCT i canFam3.chr19 C 0 C 0 e papAnu2.chr12 11260049 53 + 104110932 I a score=1018221.000000 s hg38.chr2_GL582966v2_alt 9774 309 + 96131 AGCAATGTATCAGATGATATTCATGTATATAGCAACTTTCATAGGTGAGCCTATTCCTGGATGAAATGTTGGTCAAGCTCCACTTC-TTTTTCTCTTGCTTAAAACATG--CACACATACCTGAAAGAATGTAAGACAGATATTCTTATAGTAGTAGCATCTCTCATTTAC------GTTATTCACTCTGTTTCTGAAGCTGTTTTTAATCACAAATTATTTATGGCATACCTGATAATCCATTTTGATGCCTTGGTTTGGAACTGCTAATCT-AAAAA-AAAATTGCTATTATTCTTATCATTCTGGTAAGGTTtttc-t s panTro4.chr2B 153131173 309 + 247518478 AGCAATGTATCAGATGATATTCATGTATATAGCAACTTTCATAGGTGAGCCTATTCCTGGATGCAGTGTTGGTCAAGCTCCACTTC-TTTTTCTCTTGCTTAAAACATG--CACACATACCTGAAAGAATGGAAGACAGATATTCTTATAGTAGTAGCATCTCTCATTTAC------GTTATTCACTCTGTTTCTGTAGCTGTTTTTAATCACAAATTATTTATGGCATACCTGGTAATCCATTTTGATGCCTTGGTTTGGAACTGCTAATCT-AAAAA-AAAATTGCTATTATTCTTATCATTCTGGTAAGGTTtttc-t i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38334222 311 + 135000294 AGCAATGTATCAGATGATATTCATGTATATAGCAACTTTCATAGGTGAGCCTATTCCTGGATACAGTGTTGGTCAAACTCCACTTC-TTTTTCTCTTGCTTAAAACATA--CACACATATCTGAAAGAATGTAAGACAAATATTCTTATAGTAGTAGCAACTCTCATTTAC------GTTATTCACTCTGTTTCTGAAGCTGTTTTTAATCACAAATTATTTATGGCATACCTGATAATCCATTTTGGTGCCTTGGTTTGGAACGGCTAGTCT-AAAAACAAAATTGCTATTATTCTTATCATTCTGGTAAGGTTTttctt i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82285313 311 - 85365473 AGCAATATATCAGGTGATATTCGTGTATATAGCAACTTTCATAGGTGAGCCTATTCCTGGATACAGTGTTGGTCAAACTCCACTTCTTTTTTCTCTTGCTTAAAACATA--CACACATACATGAAAGAATGTAAGACAGATATTCTTATAGTGGCAGCATCTGTCATTTAC------GTTATTCACTCTGTTTCTGAAGCTGTTTTTAATCACAAATTATTTATGGCATACCTCATAATCCATTTTGGTGCCTTGGTTTGGAACTGCTAGTCT-AAAAA-AAAATTGCTATTATTCTTATCATTCTGGTGAGGTTTTTCtt i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11898772 310 + 106825570 AGCAATGTATCAGATGATATTCATATATATAGCAACTTTCATAGGTGAGCCTGGACCTGGATACAGTGTTGTTCAAACTCCACTTC-TTTTTCTCTTGCTTAAAACCCA--CACACACACACGAAAGAATGTAAGACAGATATTCTTACAGTAGTAGCATCTCTCATTTAC------GTTATTCACTCTGTTTCTGAAGCTGTTTTTAGTTACAAATTATTTATGGCATATCCGATAATGCATTTTGGTGCCTTGGTTTGGAACTGCTAGTCT-AAAAA-AAAATTGCTATTATTCTTACCATTCTGGTAAGGTTTttctt i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37603153 310 + 132586672 AGCAATGTATCAGATGATATTCATATATATAGCAACTTTCATAGGTGAGCCTAGACCTGGATACAGTGTTATTCAAACTCCACTTC-TTTTTCTCTTGCTTAAAACCCA--CACACACACATGAAAGAATGTAAGACAGATATTCTTACAGTAGTAGCATCTCTCATTTAC------GTTATTCACTCTGTTTCTGAAGCTGTTTTTAGTTACAAATTATTTATGGCATATCCGATAATGCATTTTGGTGCCTTGGTTTGGAACTGCTAGTCT-AAAAA-AAAATTGCTATTATTCTTACCATTCTGGTAAGGTTTttctt i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11260102 311 + 104110932 aGCAATGTATCAGatgatattcatatatatagCAGCTTTCATAGGTGAGCCTGGACCTGGATACAGTG-TGTTCAAACTCcacctc--ttttctcttgcttAAAACCCAACCACACACACACGAAAGAATGTAAGACAGATATTCTTACAGTAGTAGCATCTCTCATTTAC------GTTATTCACTCTGTTTCTGAAGCTGTTTTTAGTTACAAATTATTTATGGCATATCCGATAATGCATTTTGGTGCCTTGGTTTGGAACTgctagtctaaaaaa-aaaattgctattattCTTACCATTCtggtaaggtttttctt i papAnu2.chr12 I 53 C 0 s chlSab2.chr10 34355208 312 + 128595539 AGCAATGCATCAGATGATATTCATATATATAGCAACTTTCGTAGGTGAGCCTAGACCTGGATACAGTGTTGTTCAAACTCCACTTC-TTTTTCTCTTGCTTAAAACCCACACACACACACACGAAAGAATGTAAGACAGATATTCTTACAGTAGTAGCATCTCTCATTTAC------GTTATTCACTCTGTTTCTGAAGCTGTTTTTAGTTACAAATTATTTATGGCATATCCGATAATGCATTTTGGTGCCTTGGTTTGGAACTGCTAGTCT-AAAAA-AAAATTGCTATTATTCTTACCATTCTGGTAAAGTTTttctt i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87842086 311 - 158406734 CACAATGTATCAGATGATATTCATATATGTAGCAACTTTCATAGGTGAGCCTAGACTTGGAT--AGTGTTGGTCAAACTCCACTTC-TTTTTCTCATGCTTAAAACA----CACACGTACATGAAGGAATGTAAGGCAGATATTCTTATAGTAGTAGCATCTCTCATTTACAAAGAAGTTATTCACTCTGTCTCTAAAGCTATTTTTAGTCACAAATTATTTATGGCATACCTGATAACCCATTTCGGTGCCTTGGTTTGGAACTGCTAGTCT--AAAA-AGAATTGCTATTATTCTTATCATTCTGGTAAGGTTtttctt i calJac3.chr6 I 2 C 0 s mm10.chr2 49695692 235 + 182113224 CAcagcctgtgaaatgatgcttgtatatgcatcagttttcagagctga-ccTAGGCTTGTGTGCTGTGTAGG--AAACACTGCTTC-TTGCTGTTCTGCCCGAAACC----CAAATGTACATGACAA------------------------------------------AC------CTTTCTTGCTGTGTTTCCTAAGCTG---CCAGTCATGAATTATTTACACTGTACC---------------------TGCTTCAGAGCCGAGCATGT----CG-AATGTTACTAGTGTCCTTAGCATTCTGTCAGGGTTTTTTT- i mm10.chr2 C 0 I 1421 s canFam3.chr19 50605219 306 + 53741614 GGCATCCTGACAGCTGACATTAGCACCGGCGGCCGATTTCGTAGGTGAGCCGGGACAGGTACATGGCGTAGGTTAAATTCCACCTC-TTTCTCTTCTGCTTC---------CACATACACTTGAAAGAATGCAAGACTGACAATCTTCTAGTCATAGCATCTCTCATTTATAGAGAAGGTATTTACTTGATTTCTTAAGCTGTTACTAGTCGTGAATTATTCATAGCATACTTGACAATCCATCTTGGCCCCTCAGTTCAGAACTGTAGGTGC---GGA-ACATTAACTATTTTTCTTGTCATTCTGGTAAGGTGGTTTT- i canFam3.chr19 C 0 C 0 a score=1056884.000000 s hg38.chr2_GL582966v2_alt 10083 339 + 96131 --ttattattgcaataaaatatacttaatatgaaatttgcca------tcttaacca-ttttaaagtgtgcatttatgtgatgttaagt---accttcacaatg-tgtgcaa-tgtcaccacctt----------------------------ccatctctagaa-----c-----tttatcttctccaaccaaaactctgtacccaataaac---------------------------------------------------a------ccaattctttattct-----cctcttgc--tcaacctac-----tttatctctatgaatttgactgctctaggtacctcatgtaagtggaatcataaagtgtttgtccttttgtgac----ttatttcacttagcataatgtcttcaagtttcatccatgtggtagca------agtgtccttcctttttaag--gctgaa s panTro4.chr2B 153131482 339 + 247518478 --ttattattgcaataaaatatacttaatatgaaatttgcca------tcttaacca-ttttaaagtatgcatttatgtgacgttaagt---accttcacattg-tgtgcaa-tgtcaccacctt----------------------------ccatctctagaa-----c-----tttatcttctccaaccaaaactctgtacccattaaac---------------------------------------------------a------ccaattctttattct-----cctcttgc--tcaacctac-----tttatctctatgaatttgactgctctaggtacctcatgtaagtggaatcataaagtgtttgtccttttgtgac----ttatttcacttagcataatgtcttcaagtttcatccatgtggtagca------agtgtccttcctttttaag--gctgaa i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38334533 339 + 135000294 --ttattattccaataaaatatacttaacatgaaatttgcca------tcttaacca-ttttaaagtatgcatttatgtgacattaagt---accttcacattg-tgtgcaa-cgtcaccacctt----------------------------ccatctctagaa-----c-----tttatcttctccaaccaaaactctgtacccattaaac---------------------------------------------------a------ccaattctttattct-----cctcttgc--tcaacctac-----tttatctctgtgaatttgactgctctaggtacttcatgtaagtagaatcataaagtgtttgtccttttgtgac----ttatttcacttagcataatgtcttcaagtttcatccatgtggtagca------agtgtccttcctttttaag--gctgaa i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82285624 339 - 85365473 --ttgttattgcaataaaatatacttaacatgaaatttgcca------tcttaacca-ttttaaagtatgcatttatgtgacattaagt---accttcacattg-tgtgc----gtcaccacctt----------------------------ccatctctagaatttttt-----tttatcttctccaaccaaaactctgtacccattaaac---------------------------------------------------a------ccaattctttattct-----cctcttgc--tcaacctac-----tttgtctc--tgaatttgactgctgtaggtacctcatgtaagtggaatcataaagtgtttgtccttttgtgac----ttatttcacttagcataatgtcttcaagtttcatccatgtggtagca------agtgtccttcctttttaag--gctgaa i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11899082 394 + 106825570 --ttattattgcaataaaatatacttaacatgaaatttgcca------tcttaacca-ttttaaagtatgcatttatgtgacattaagt---accttcacattg-tgtgcaa-cggcaccacctt----------------------------ccatctctagaa-----c-tttttttatcttctccaaccaaaactctgaactcattaaacactaactctttattctcctcttgctcagtatactttgtctctatgaatttga------ccaactctttattct-----cctcttgc--tcagtgtac-----tttgtctctatgaatttgactgctctaggtacctcatataagtggaatcataaagtgtttgtccttctgtgac----ttacttcacttagcataatgtcttcaagtttcatccacgtgctagca------aatgtccttcctttttaag--gctgaa i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37603463 343 + 132586672 --ttattattgcaataaaatatacttaacatgaaatttgcca------tcttaacca-ttttaaagtatgcatttatgtgacattaagt---accttcacattg-tgtgcaa-cggcaccacctt----------------------------ccatctctagaa-----c-tttttttatcttctccaaccaaaactctgaacccattaaac---------------------------------------------------a------ccaactctttattct-----cctcttgc--tcaatgtac-----cttgtctctatgaatttgactgctctaggtacctcatataagtggaatcataaagtgtttgtccttctgtgac----ttatttcacttagcataatgtcttcaagtttcatccacgcgctagca------agtgtccttcctttttaag--gctgaa i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11260413 344 + 104110932 --ttattattgcaataaaatatacttaacatgaaatttgcca------tcttaacca-ttttaaagtatgcaTTTATGTGACATTAAGT---ACCTTCACATTG-TGTGCAA-CGGCACCACCtt----------------------------ccatctctagaa-----cttttttttatCTTCTCCAACCAAAACTCTGAACCCGTTAAAC---------------------------------------------------A------CCAACTCTTTATTCT-----CCTCTTGC--TCAGTGTAC-----TTTGTCTGTATGAATTTGACtgctctaggtacctcatataagtggaatcataaagtgtttgtccttctgtgac----ttatttcacttagcataatgtcttcaagtttcatccacGCGCTAGCA------Agtgtccttcctttttaag--gctgaa i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34355520 339 + 128595539 --ttattattgcaataaaatatacttaacatgaaatttgcca------tcttaacca-ttttaaagtatgcatttatgtgacattaagt---accttcacattg-tgtgcaa-c----ccacctt----------------------------ccatctctagaa-----c-tttttttatcttctccaaccaaaactctgaacccattaaac---------------------------------------------------a------ccaactctttattct-----cctcttgc--tcactgtac-----tttgtctctatgaatttgactgctctaggtacctcatataagtggaatcataaagtgtttgtccttctgtgac----ttatttcacttagcataatgtcttcaagtttcatccacgcgctagca------agtgtccttcctttttaag--gctgaa i chlSab2.chr10 C 0 I 1877 s calJac3.chr6 87842397 337 - 158406734 --ttattatagtaacaaaacacacatgacatggaatttgcca---------taacca-ttttaaagtatgcatttacattacattaagt---gccttcacactg-tgtgcaa-cgtcaccacctt----------------------------ccatctctagaa-----c-----tttatcttctccagccaaagctctgtacccattaaac---------------------------------------------------a------ctaactctttattct-----cctcttgc--ccaacctac-----tttgtctc--tgaatttgactgctcta-gtacctcatgtaagcggaatcataaagtgtttatccttttgtgacttgtttatttcacttagcataatgtcctcaagtttcatccatgttgtaaca------agtgtccttcctttttaag--gctgaa i calJac3.chr6 C 0 C 0 s canFam3.chr19 50605525 404 + 53741614 TAAAATCattgtgggaaaatacccgtaatacaaaactt--cagcagagttttaaccatttttaaagggtacaattcagtagcgttaagtcgcccattcacgatgttttgcagtcatcaccactgtaaatgaaaggcaagaatggcagaaaggcatatttccagaa-----t-----ttaagcatcccaaggttaaacctcatgtccattgagc---------------------------------------------------aatacgccccacacttcctcctcccaacctctggtaaccactatactatgttgtgtctccatgaatttgacaactccaggtacctcctgtaagtggagtgatacaa-----atcctcttgtgacgtgcttgcttcacatggcataacgtctttaaggctcatccatgttgtagcatacgtcaatgtcctttctttttaaaatgctgaa i canFam3.chr19 C 0 C 0 e mm10.chr2 49695927 1421 + 182113224 I a score=715650.000000 s hg38.chr2_GL582966v2_alt 10422 276 + 96131 caatattccattgtatgtatatacaacatttaaaaaattcgtttaaccattaa--------tggacgcttgggtggcttccacattttggcagttgtgaataatgctgttatgaacataggtgtgcaaacatct---atttgagtccttgatttcaattcttttgagtatatatgcagaagtggaattttcggatctcatggtaattctactttca-atttcttgaggaaccgctactat--ttgctattattacgattttctatagcagct--gtaccattttctattcct s panTro4.chr2B 153131821 276 + 247518478 taatattccattgtatgtatatacaacatttaaaaaattcatttaaccattaa--------tggacgcttgggtggcttccacattttggcagttgtgaataatgctcttatgaacataggtgtgcaaacatct---atttgagtccttgatttcaattcttttgagtatatatgcagaagtggaattttcggatctcatggtaattctactttca-atttcttgaggaaccgctactat--ttgctattattactattttctatagcagct--gtaccattttctattcct i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38334872 276 + 135000294 taatattccattgtatgtatatacaacatttaaaaaattcatttaaccattaa--------tggacgcttgggtggcttccacattttggcagttgtgaataatgctgttatgaacataggtgtgcaaacatct---atttgagtccttgatttcaattcttttgagtatatatgcagaagtggaattttcagatctcatggtaattctactttca-atttcttgaggaaccgctactat--ttgctattattactattttctatagcagct--gtaccattttctattcct i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82285963 276 - 85365473 taatattccattgtatgtatatacaacatttaacaaattcatttaa--attaa--------tggacgcttgggtggcttccacattttggcgattgtgaataatgctgttatgaacataggtgtgcaaacatct---atttgagtccttgatttcaattcttttgagtatatatgcagaagtggaattttcggatcttatggtaattctactatca-atttcttgaggacctgctactatgattgctattattactattttctacagcagct--gtaccattttctattcct i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11899476 276 + 106825570 taatattccattgtatgtatatacaacatttaaaaaattcatttaaccattaa--------tggacacttgggtagcttctacattttggcaattgtgaataatgctgttatgaagaaaggtgtgcaaacatct---atttgagtccttgatttcaattcttttgagtatataagcagaagtggaatttctggatcttatggtaattctactttca-gtttcttgaggaaccgctcctat--ttgctattattactattttctacagcagct--gtaccattgtctattcct i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37603806 276 + 132586672 taatattccattgtatgtatatacaacatttaaaaaattcatttaaccattaa--------tggacacttgggtggcttctacattttggcaattgtgaataatgctgttatgaagaaaggtgtgcaaacatct---atttgagtccttgatttcaattcttttgagtatatatgcagaagtggaatttctggatcttatggtaattctactttca-gtttcttgagaaaccgctactat--ttgctattattactattttctacagcagct--gtaccattgtctattcct i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11260757 276 + 104110932 taatattctattgtatgtatatacaacatttaaaaaattcgtTTAACCATTAA--------TGGACACTTGGGTGGCTTCCACATTTTGGcgattgtgaataatgctgttatgaagaaAGGTGTGCAAACATCT---ATTTGAGTccttgatttcaattcttttgagtatataagcagaagtggaatttctggatcttatggtaattctactttca-GTTTCTTGAGGAACCGCTACTAT--TTGCTATTATTCCTGTTTTCTACAGCAGCT--GTACCATTGTCTATTCCT i papAnu2.chr12 C 0 C 0 s calJac3.chr6 87842734 275 - 158406734 taatattccattgtatgtatatacaatatttaaaaaatttatttaactatcag--------tggacacttaggtggcttccgcattttggccattgtgaatgatgctattatgaacataggtgtgcaaacatttga-gtttga---tttgatttcaattcctttgagcatatatgcagaagtggagtttctggatcttatggtaattctactttca-gttttttgaggaaccattactat--ttgctattattactattttccatagcagtg--atatcattttctgttctt i calJac3.chr6 C 0 I 2316 s canFam3.chr19 50605929 270 + 53741614 taatattctcttgtatgtatatactacattttgtccattcattcatccacagatagacacgtagacacttgtgttgcttccaccttctggctgttgtggataatgctgctatgaacatggatgtgtaaatatcttctgttgaggtttctgct-----ttcttttgggtatacacacagaagtggaggtgctagatct-atgttcgctctacttttacattttttaaggaactgccac----------------actgttttccattgtagctgcgcaccattttatgttccc i canFam3.chr19 C 0 C 0 e mm10.chr2 49695927 1421 + 182113224 I e chlSab2.chr10 34355859 1877 + 128595539 I a score=92013.000000 s hg38.chr2_GL582966v2_alt 10698 52 + 96131 aacagcagtacatcagagtttccatttctctatatccttgcc-a--------------------------cttgttatt s panTro4.chr2B 153132097 52 + 247518478 aacagcagtacatcagagtttccatttctctatatccttgcc-a--------------------------cttgttatt i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38335148 53 + 135000294 aacagtggtacaccagagtttccatttctctatacacttgccaa--------------------------cttgttatt i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82286239 51 - 85365473 aacagcagtacacc--agtttccatttctctagatccttgccaa--------------------------cttgctgtt i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11899752 53 + 106825570 aacagcagaacaccagagttttcatttctctacatccttgccaa--------------------------cttgttatt i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37604082 53 + 132586672 aacagcagaacaccagagttttcatttctctacatccttgccaa--------------------------cttgttatt i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11261033 53 + 104110932 AACAGCAGAACACcagagttttcatttctctacatccttgccaa--------------------------cttgttatt i papAnu2.chr12 C 0 C 0 s canFam3.chr19 50606199 79 + 53741614 accaagagtgcatgagagtttcaatttctccacctccttgccaacgcttcttagtttcttttcaaagattctatttatt i canFam3.chr19 C 0 I 173 e calJac3.chr6 87843009 2316 - 158406734 I e mm10.chr2 49695927 1421 + 182113224 I e chlSab2.chr10 34355859 1877 + 128595539 I a score=1365317.000000 s hg38.chr2_GL582966v2_alt 10750 654 + 96131 gttatta-tt---tttataatagccatccaaat-ggtgtgaagtgctgtttcattgtggttttgatttgcatttccctaatgattagtgatgttcagcatcttttcatgtgcttataggccatttgtatatcttctttgaggaatgtctattcaaggtctgtatttattttttaatcaggttaatttgttgttgttgactt----ggagttctctatgtattctggacatcaatcccttattagatatatgatttataaa-attttcttctattccatggattgc-ttttttacactattgatagtgtcttttgata--taaaagtttttaattttgatgaagt---gtcta----------tttttatt-ttgttgcttgtgctttgggtgtcatatccaagaaattattgccaagtccaatgtcatgaagcttttctcctgtgttttcttctaagagttttatagttttagtttttatatgtaggtatttgatccttttggagtaaatttttgcatgtactctaaggtaagggcccaacattaatatattttttgcatgtagctatccagtttttccaaca--ctatttgttgaaaagactgttctttccacattaaatggtcttgacactcttgttgaaaattattcaacca-tatatgtgaggatttatttctgggccct s panTro4.chr2B 153132149 654 + 247518478 gttatta-tt---tttataatagccatccaaat-ggtgtgaagtgctgtttcattgtggttttgatttgcatttccctaatgattagtgatgttcagcatcttttcatgtgcttataggccatttgtatatcttctttgaggaatgtctattcaaggtctgtatttattttttaatcaggttaatttgttgttgttgactt----ggagttctctatgtattctggacatcaatcccttattagatatatgatttataaa-attttcttctattccatggattgc-ttttttacactattgatagtgtcttttgata--taaaagtttttcactttgatgaagt---atcta----------tttttatt-ttgttgcttgtgctttgggtgtcatatccaagaaattattgccaagtccaatgtcatgaagcttttctcctgtgttttcttctaagagttttatagttttagtttttatatgtaggtatttgatccttttggagtaaatttttgcatgtactctaaggtaagggcccaacattaatatattttttgcatgtagctatccagtttttccaaca--ctatttgttgaaaagactgttctttccacattaaatggtcttgacactcttgttgaaaattattcaacca-tatatgtgaggatttatttctgggccct i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38335201 656 + 135000294 gttattattt---tttataatagccatccaaat-ggtgtgaagtgctgtttccttgtggttttgatttgcatttccctaatgattagtgatgttgagcatcttttcatgtgcttataggccatttgtatatcttctttgaggaatgtctattcaaggtctgtatttattttttaatcaggttaatttgttgttgttgacct----ggagttctctatgtattctggacatcaatcccttattagatatgtgatttataaa-attttcttctattccatggattgctttttttacactattgatagtgtcttttgata--taaaagtttttaattttgatgaagt---atcta----------gttttatt-ttgttgcttgtgctttgggtgtcatatccaagaaattattgccaagtccaatgtcatgaagcttttctcctgtgttttcttctaagagttttatagttttagtttttatatgtaggtatttgatccttttggagtaaatttttgcatgtactctaaggtaagggcccaacattaatatattttttgcatgtagctatccagtttttccaaca--ctatttgttgaaaagactgttctttccacattaaatggtcttgacactcttgttgaaaattatttgacca-tatatgtaaggatttatttctgggccct i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82286290 652 - 85365473 actgt---tt---tttataatcgccatccaaat-ggtgtgaagtgctgtttcgttgtggttttgacttgcatttccctaatgattagtgatgttgagcatcttttcatgtgcttataggccatttgtatatcttctttgaggaatgtctattcaaggtctgtatttattttttaatcaggttaatttgttgtcgttgactt----ggagttccctatgtattctggacatcaatcctttattagatatatgatttataaa-attttcttctattccatggattgc-ttttttacactattgatagtgtcttttgata--taaaagtttttaattttgatgaagt---atctt----------tttttatt-ttattgcttgtgctttgggtgtcatatccaagaaattattgccaagtccaatgtcatgaagcttttctcctgtgttttcttctaagagttttatagttttagtttttataagtaggtatttgatccttttggagtaaatttttgcatgtactctaaggtaagggcccaacgttaatatattttttgcatgtagctgtccagtttttccaaca--ctatttgttgaaaagactgttctttccacattaaatggtcttgacactcttgttgaaaattatttgacca-tatgtgtgaggatttatttctgggccct i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11899805 652 + 106825570 gttactattt---tttataatagccatctaaat-ggtgtgaagtactgtttcattgtggttttgatttgcatttctctaatgattagtgatgttgagcatcttttcatgtgcttataggccatttgtatatcttctttgagggatgtctattcaaggtctgtatttattttttaatcaggttgatttgttgttgttgacttgtagggagttctctatgtattctggacatcaatcccttattagatatacgatttataaa-attttcttctattccatggattgc-ttttttacactattgatagtgtcttttgataggtaaaagtttttaattttgatgaagt---gtcta----------tttttatt-ttgttgcttgttctttgggtgtcatatccaggaaattattgacaagtccaatgtcatgaagcttttctcctgtgttttagtctaagagttttatagttttagtttttatttgtaggtatttgatccttttggagtaaatttttgcatgtactctaaggtaagggcccaacattaatatattttttgcatgtagata---------tccaaca--ctatttgttgaaaagactgttctttccacatgaaatggtcttgacactcttgttgaaaatcatttgacca-tatatgtgaggatttatttctaaaaaat i rheMac3.chr12 C 0 I 90 s macFas5.chr12 37604135 652 + 132586672 gttactattt---tttataatagccatctaaat-ggtatgaagtactgtttcattgtggttttgatttgcatttctctaatgattagtgatgttgagcatcttttcatgtgcttataggccatttgtatatcttctttgagggatgtctattcaaggtctgtatttattttttaatcaggttgatttgttgttgttgacttgtagggagttctgtatgtattctggacatcaatcccttattagatatatgatttataaa-attttcttctatttcatggattgc-ttttttacactattgatagtgtcttttgataggtaaaagtttttaattttgatgaagt---gtcta----------tttttatt-ttgttgcttgttctttgggtgtcatatccaggaaattattgacaagtccaatgtcatgaagattttctcctgtgttttagtctaagagttttatagttttagtttttatatgtaggtatttgatccttttggagtaaatttttgcatgtgctctaaggtaagggcccaacattaatatattttttgcatgtagata---------tccaaca--ctatttgttgaaaagactgttctttccacatgaaatggtcttgacactcttgttgaaaatcatttgacca-tatatgtgaggatttatttctgggccct i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11261086 652 + 104110932 gttactattt---tttatagtagccatctAAAT-GGTGTGAAGTActgtttcattgtggttttgatttgcatttctctaatgattagtgatgttgagcatcttttcatgtgcttataggccatttgtatatcttctttgaggGATGTCTATTCAAggtctgtatttattttttaatcaggttgatttgttgttgttgacttgtAGGGAGTTCTCTATGTATTCTGGACATCAATCCCTTATTAGATATACgatttataaa-attttcttctattccatGGATTGC-TTTTTTACACtattgatagtgtcttttgataggtgaaagtttttaattttgatgaagt---gtcta----------tttttatt-ttgttgcttgttcTTTGGGTGTCATATCCAGGAAATTATTGACaagtccaatgtcatgaagcttttctcctgtgttttagtctgagagttttatagttttagtttttatttgtaggtatttgatccttttggagtaaatttttgCATATACTCTAAGGTAAGGGCccaacattaatatattttttgcatgtagata---------tccaaca--ctatttgttgaaaagactgttctttccacATGAAATGGTCTTGAcactcttgttgaaaatcatttgacca-tatatgtgaggatttatttctgggccct i papAnu2.chr12 C 0 C 0 s canFam3.chr19 50606451 642 + 53741614 gtttctatttttgtttttagtagccatactaatgggtgtaaagtgttatgttgttgtggttttgattcgcatttcactaatgattagtgatgtttggcgttttttcatgtgcatattggccatttgtacattgtctttggaaaa---ctgttcaggtcctttgctcagtttataattggatt--tcttttcttgttgatctata-ggagttctttgtacattctggatctcaattccttatgagacatatgatttgcaaatattttctctcattctatgggttgc-ctttttgttctgttgatgctgtcctttcatgcataaaagtttttaattttgataaagtccaatataaagtccttgttttttattattgctgcttgtggttttggtattatttccaagaaatcattgccaaatccagtgttatgaa---------ctatgctttcttcga--gattttatagttttagctttttcattt-ggtttttgattagttttgagttag----tacatggcct---gggtaagagtctaacttca----cttttttgcatgtggatg---------tccagtatccggtttggtaaagagactgttgtttccccaccaaatggtcttgacactcttgttgaagattattttaccattttatgtgagagtttatttctgggc--- i canFam3.chr19 I 173 C 0 e calJac3.chr6 87843009 2316 - 158406734 I e mm10.chr2 49695927 1421 + 182113224 I e chlSab2.chr10 34355859 1877 + 128595539 I a score=140598.000000 s hg38.chr2_GL582966v2_alt 11404 93 + 96131 ttattctcttctgttgatttatatgtctgtctttatgtcaataccacactgttttgattcctgtagctttgtagtaacttttattttttattt s panTro4.chr2B 153132803 93 + 247518478 ttattctcttctgttgatttatatgtctgtctttatgtcaataccacactgttttgattactgtagctttgtagtaacttttattttttattt i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38335857 93 + 135000294 ttattctcttctgttgatttatatgtctgtctttatgtcaataccacactgttttgattactgtagctttgtagtaacttttattttttattt i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82286942 93 - 85365473 ttattctcttctgttgatttatatgtctgtctttatgtcaataccacaccgttttgattactgtagctttgtagtaacttttattttttattt i nomLeu3.chr20 C 0 C 0 s macFas5.chr12 37604787 93 + 132586672 ttattctgttccattgatttatatgtctgtctttatgtcaataccacactgttttgattactgtaactttgtggtaacttttattttttattt i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11261738 93 + 104110932 ttattctgttccattgatttatatgtctgtctttatgtcaataccacactgttttgattactgtaactttgtggtaacttttattttttattt i papAnu2.chr12 C 0 C 0 s canFam3.chr19 50607093 78 + 53741614 ----tctcactggtctgtctatgtgcttgcctttatgccagtatcacactg-tttgattcctgtagcttagtagtaagttttg---------- i canFam3.chr19 C 0 C 0 e calJac3.chr6 87843009 2316 - 158406734 I e mm10.chr2 49695927 1421 + 182113224 I e chlSab2.chr10 34355859 1877 + 128595539 I e rheMac3.chr12 11900457 90 + 106825570 I a score=326524.000000 s hg38.chr2_GL582966v2_alt 11497 192 + 96131 ttccataggctattggggtacaggtggtatttggttacatgagtaagttctttagtgctaatttgtgaggttttggtgcacctatcacccgaactgtatgcactgcaccctatttgtagtctcttatccctcaccctactcccacccttcccctcaagtccccaaagtccattatattgttgaagtgtgaga s panTro4.chr2B 153132896 192 + 247518478 ttccataggctattggggtacaggtggtatttggttacatgagtaagttctttagtgctaatttgtgaggttttggtgcacctatcacccgaactgtatgcactgcaccctatttgtagtctcttatccctcaccctactcccacccttcccctcaagtccccaaagtccattatattgttgaagtgtgaga i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38335950 192 + 135000294 ttccataggctattggggtacaggtggtatttggttacatgagtaagttctttagtgctaatttgtgaggttttggtgcacctatcacccgagctgtatgcactgcaccctatttgtagtcttttatccctcaccctactcccacccttcccctcaagtccccaaagtccattatattgttgaagtgtgaga i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82287035 192 - 85365473 ttccataggttattggggtacaggtggtatttggttacatgagtaagttctttagtgccaatttgtgaggttttggtgcacctatcacctgagctgtatgcactgcaccctatttgtagtctcttatcccttgccctactcccacccttcccctcaagtccctaaagtccattatattgttgaagtgtgaga i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11900547 192 + 106825570 ttccataggttattggggtacaggtagtatttggttacatgagtaagttctttagcgctgatttgtgaggttttgatacacctatcacctcagctgtatgcaatgcaccctatttgttgtcttttatccctcgccctactcccacccttcccctcaagtccccaaagtccattatattgttgaagtgtgaga i rheMac3.chr12 I 90 C 0 s macFas5.chr12 37604880 192 + 132586672 ttccataggttattggggtacaggtagtatttggttacatgagtaagttctttagcgctaatttgtgaggttttgatgcacctatcacctcagctgtatgcactgcaccctatttgttgccttttatccctcgccctactcccacccttcccctcaagtccccaaagtccattatattgttgaagtgtgaga i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11261831 192 + 104110932 ttccataggttattggggtacaggtagtatttggttacatgagtaagttctttagcgcTGATTTGTGAGGTTTTGATGCACCTATCACCTCAGCTGTATGCACTGCACcttatttgttgtcttttatccctcgccctattcccacccttcccctcaagtccccaaagtccattatattgTTGAAGTGTGAGA i papAnu2.chr12 C 0 C 0 s canFam3.chr19 50607171 22 + 53741614 ------------------------------------aaatgagtaag-------------------------------------------------------------------tgtgttctttt------------------------------------------------------------------- i canFam3.chr19 C 0 C 0 e calJac3.chr6 87843009 2316 - 158406734 I e mm10.chr2 49695927 1421 + 182113224 I e chlSab2.chr10 34355859 1877 + 128595539 I a score=70718.000000 s hg38.chr2_GL582966v2_alt 11689 34 + 96131 ccttcaactctgttc-------------------------------------------------------------------------ttatttttcaagattgttt s panTro4.chr2B 153133088 34 + 247518478 ccttcaactctgttc-------------------------------------------------------------------------ttatttttcaagattgttt i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38336142 34 + 135000294 ccttcaactctgttc-------------------------------------------------------------------------ttagttttcaagactgttt i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82287227 34 - 85365473 ccttcaactctgttc-------------------------------------------------------------------------ttatttttcaagattgttt i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11900739 107 + 106825570 ccttcaactctgttcttatttttcaagattgtttaggctatttggggtcccttgagattgttgaagtgtgagaccttcaactctgttcttatttttcaagattgttt i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37605072 34 + 132586672 ccttcaactctgttc-------------------------------------------------------------------------ttatttttcaagattgttt i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11262023 34 + 104110932 CCTTCAactctgttc-------------------------------------------------------------------------ttatttttcaagattgttt i papAnu2.chr12 C 0 C 0 s calJac3.chr6 87845325 34 - 158406734 ccaccaacactgttc-------------------------------------------------------------------------ttatctttcaagattgttt i calJac3.chr6 I 2316 C 0 s canFam3.chr19 50607193 21 + 53741614 ----------tgttc----------------------------------------------------------------------------tttttcaagattgttt i canFam3.chr19 C 0 C 0 e mm10.chr2 49695927 1421 + 182113224 I e chlSab2.chr10 34355859 1877 + 128595539 I a score=922486.000000 s hg38.chr2_GL582966v2_alt 11723 300 + 96131 aggctatttggtatcccttgagatttcatataaattttaggatggatttttctgcttctat-aaaatatgtcattgaaattttgatagagattgccatgaatctgtagattgctttgggtaatactga-cagcttaatgatattaagtctttcaatcaa----------tccctttatttgtgtcttctttcatat--------------------------------------------------------------------------------ctttcag--------------------------------------tcatgttttgtagtttccagtgtacaagtctttctcttctttggttaagtttattcctaagtagtttattc------------------------------tttttttgctattataaataaggttgttttcttaattt s panTro4.chr2B 153133122 300 + 247518478 aggctatttggtatcccttgagatttcatataaattttaggatggatttttctgcttctgt-aaaatatgtcattgaaattttgatagagattgccgtgaatctgtagattgctttgggtaatactga-cagcttaatgatattaagtctttcaatcaa----------tccctttatttgtgtcttctttcatat--------------------------------------------------------------------------------ctttcag--------------------------------------tcatgttttgtagtttccagtgtacaagtctttctcttctttggttaagtttattcctaaatagtttatcc------------------------------tttttttgctattataaataaggttgttttcttaattt i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38336176 300 + 135000294 aggctatttggtgtcccttgagatttcatataaattttaggatggatttttctacttctat-aaaatatgtcattgaaattttgatagagattgccctgaatctgtaggttgctttggttaatactga-cagcttaatgatactaagtcttccaatcaa----------tccatttatttgtgtcttctttcatat--------------------------------------------------------------------------------ctttcag--------------------------------------tcacattttgtagtttccagtgtacaagtctttctgttctttggttaagtttattcctaagtagtttattc------------------------------tttttttgctattataaataaggttgttttcttaattt i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82287261 300 - 85365473 aggctatttggggtcccttgagatttcatacatattttaggatggatttttctacttctgt-aaaatatgtcattgaaattttgatagagattgccctgaatctatagattgttttgggtaatactga-cagcttaatgatattaagtcttccaatcaa----------tccatttgtttgtgtcttctttcatat--------------------------------------------------------------------------------ctttcaa--------------------------------------tcgcattttgtagtttccagtgtacaagtctttcccttctttggttaagtttattcctaagtagtttattc------------------------------tttttttgctattataaataaggttgttttcttaattt i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11900846 312 + 106825570 aggctatttggggtcccttgagatttcatatgaattttaggatggatttttgtacttctgc-gaaatatgtcattgaaattttgatagagattgcactgaatttgtagattgctttgggttatactga-cagcctaatgatattaagtcttctaatcaa----------tccatttatttgtgtcttctttcatat--------------------------------------------------------------------------------ctttcag--------------------------------------tcacattttgtagtttccagtgtacaagtctttctcttctctggttaagtttattcctaagtagttttttc------------------tttttttttttttttttttgctattataaataaggttgttttcttaattt i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37605106 311 + 132586672 aggctatttggggtcccttgagatttcatatgaattttaggatggatttttgtacttctgt-gaaatatgtcattgaaattttgatagagattgcactgaatttgtagattgctttgggttatactga-cagcttaatgatattaagtcttctaatcaa----------tccatttatttgtgtcttctttcatat--------------------------------------------------------------------------------ctttcag--------------------------------------tcacattttatagtttccagtgtacaagtctttctcttctctggttaagtttattcctaagtagtttattc-------------------ttttttttttttttttttgctattataaataaggttgttttcttaattt i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11262057 308 + 104110932 aggctatttggggtcccttgagatttcatatgaattttaggatggatttttGTACTTCTGC-GAAATatgtcattgaaattttgatagagattgcactgaatttgtagattgctttgggttaTACTGA-CAGCCTAAtgatattaagtcttctaatcaa----------tccatttatttgtgtcttctttcatAT--------------------------------------------------------------------------------CTTTCAG--------------------------------------TCACATTTTGTAGTTtccagtgtacaagtctttctcttctctggttaagtttattcctaagtagtttatt--------------------tcttttttttttttttttgcta-tataaataagg-tgttttcttaattt i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34357736 330 + 128595539 Aggctatttggggtcccttgagatttcatatgaattttaggatggagttttgtacttctgc-gaaatatgtcattgaaattttggtagagattgcactgaatttgtagatagctttgggttatactga-cagcttaatgatattaagtcttctaatcaa----------tccatttatttatgtcttctttcatat--------------------------------------------------------------------------------ctttcag--------------------------------------tcacattttgtagtttccagtgtacaagtctttctcttctctggttaagtttattcctaagtagtttattcttttatttatttatttatttatttatttatttattttgctattataaataaggttgttttcttaattt i chlSab2.chr10 I 1877 C 0 s calJac3.chr6 87845359 294 - 158406734 -tgctatttggggtcccttgagatttcatatgaattttaggatggatttttctacttctacaaaaaaatgtcattaaaattttgatagaaattgcactgaatctgtaggttgctttgggtaatactgc-cagcttaatgatatt--gtcttct----aa----------tccatttatttgtatcttctttcatgt--------------------------------------------------------------------------------ctttcag--------------------------------------tgacattttgtagttttcaatgtataagtctttcttttctttggttaagtttattcctaagtattttattt---------------------------ttttttttttgttattacaagtaaggttgttttct---ttt i calJac3.chr6 C 0 C 0 s canFam3.chr19 50607214 424 + 53741614 tgggtattcagggttcctggggattccatataaattttgggatgaacttttctatttctgc-aaaaaacacgactaggttcctgctatagattgcatcaaatctctagattgcttttggtagtattgaccattttcacaatgtaaagtcttctgatccaggaatgtctttccttttaagtgtgtcttcttacattttgtagtttttattctttttaaagttttaaaaagattttacttttttaaaagtgatctctataaccaatgtgggactggaactttcaaccttgagatccagagtcgcaaattcccagccaggtgcccctcattttgtagttattagaatacatgtctttcatttcttttgttagatttacccctaagcattgtattc-----------------------------tttttgttgaaatttta------tttattttatttattt i canFam3.chr19 C 0 I 1419 e mm10.chr2 49695927 1421 + 182113224 I a score=296795.000000 s hg38.chr2_GL582966v2_alt 12023 104 + 96131 ttt----gggttgttcattgttagtatatagaaatgcaactgattttttacatgttgattttgtatcctacagctttgctgaattaa-ttattagttctaacag-ttttt s panTro4.chr2B 153133422 104 + 247518478 ttt----gggttgttcattgttagtatatagaaatgcaactgattttttacatgttgattttgtatcctacaactttgctgaattaa-ttattagttctaacag-ttttt i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38336476 104 + 135000294 ttt----gggttcttcattgttagtatatagaaatgcaactgattttttacatgttgattttgtatcctacaactttgctgaattaa-ttattagttctaacag-ttttt i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82287561 104 - 85365473 tgg----gggttgttcattgttagtatatagaaatgcaactgattttttacatgttgattttgtatcctacaactttgctgaattaa-ttattagttctaatac-ttttt i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11901158 104 + 106825570 ttt----gggttgttcattgttagtacatagaaatgcaactgattttttacatgttgatttcgtatcctacaactttgctgaagtaa-ctgttagtttggacag-ttttt i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37605417 104 + 132586672 ttt----gggttgttcattgttagtacatagaaatgcaactgattttttacatgttgattgcgtatcctacaactttgctgaattaa-ctgttagtttggacag-ttttt i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11262365 103 + 104110932 ttt----gggTTGTTCA-TGTTAGtacatagaaatgcaactgattttttacatgttgatttcgtatcctacaactttgctgaattaa-CTGTTAGTTtggacag-ttttt i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34358066 104 + 128595539 ttt----gggttgttcattgttagtacatagaaatgcaactgattttttacatgttgatttcgtatcctacaactttgctgaattaa-ctgttagtttggacag-ttttt i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87845653 110 - 158406734 tttgggggggttcttcattgttagtatatagaaatgcaactgattttttacatgttaattttgtatcctacacttttgctgaattcatttattagttctaacagtttttt i calJac3.chr6 C 0 C 0 e canFam3.chr19 50607638 1419 + 53741614 I e mm10.chr2 49695927 1421 + 182113224 I a score=111750.000000 s hg38.chr2_GL582966v2_alt 12127 34 + 96131 taaaaatgaatctttaggg------ctttttacatataaT s panTro4.chr2B 153133526 34 + 247518478 taaaaatgaatctttaggg------ctttttacatataaT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38336580 34 + 135000294 taaaaatgaatctttaggg------ctttttacatataaT i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82287665 34 - 85365473 aaaaaatgaatctttaggg------ctttttacatataaT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11901262 34 + 106825570 taaaaatgaatctttagag------ctttttacatataaT i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37605521 34 + 132586672 taaaaatgaatctttagag------ctttttacatataaT i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11262468 34 + 104110932 taaaaatgaatctttaGAG------CTTTTTACATATAAT i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34358170 34 + 128595539 aaaaaatgaatctttagag------ctttttacatataaT i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87845763 34 - 158406734 tttaaatgaatctttagga------ctttttacatataaT i calJac3.chr6 C 0 C 0 s mm10.chr2 49697348 40 + 182113224 TAAAATGGGATCTTTAGAGGGTTTATTTTTTTTGAACAAT i mm10.chr2 I 1421 C 0 e canFam3.chr19 50607638 1419 + 53741614 I a score=502635.000000 s hg38.chr2_GL582966v2_alt 12161 144 + 96131 CTGGTAAGATGGTTT-TGAGAAATGATTGCTGGTGAAGGCTGAATGGGATGGTTGCTGGGGTCTCTGTCTGCT-TGGCAGACAAAGACGAGGATTTGCAAGGATTTTTATTTCCAGTACCCCATCTTAATGAAGCATATTTAATTT s panTro4.chr2B 153133560 144 + 247518478 CTGGTAAGATGGTTT-TGAGAAATGATTGCTGGTGAAGGCTGAATGGGATGGTTGCTGGGGTCTCTGTCTGCT-TGGCAGACAAAGACGAGGATTTGCAAGGATTTTTATTTCCAGTATCCCATCTTAATGAAGCATATTTAATTT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38336614 144 + 135000294 CTAGTAAGATGGTTT-TAAGAAATGTTTGCTGGTGAAGGCTGAATGGGATGGTTGCTGGGGTCTCTGTCTGCT-TGGCAGACAAAGACGAGGATTTGCAAGGATTTTTATTTCCAGTACCCCATCCTAATGAAGCATATTTAATTT i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82287699 144 - 85365473 CTGGTAAGATGGTTT-TGAGAAATGATTGCTGGGGAAGGCTGAATGGGATGGTTGCTGGGGTCTCTGTCTGCT-TGGCAGACAAACACGAGGATTTGCAAGGATTTTTATTTCCAGTACCACATCCTAATGAAGCATATTTAATTT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11901296 144 + 106825570 CTGGTAAGATGGTTT-TGAGAACTGATTGCTGATGAAGGCTGAATAGGATGGTCGCTGGGGTCTCTGTCTGCT-TGGCAGACAAAGACGAGGTTTTGCAAGCATTTTCATTTCCAGTACCCCATCCTAGTGAAGCATATTTAATTT i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37605555 144 + 132586672 CTGGTAAGATGGTTT-TGAGAACTGATTGCTGATGAAGGCTGAATAGGATGGTTGCTGGGGTCTCTGTCTGCT-TTGCAGACAAAGACGAGGATTTGCAAGCATTTTCATTTCCAGTACCCCATCCTAATGAAGCATATTTAATTT i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11262502 144 + 104110932 CTGGTAAGATGGTTT-TGAGAACTGATTGCTGATGAAGGCTGAATAGGATGGTTGCTGGGGTCTCTGTCTGCT-TGGCAGACAAAGACGAGGATTTGCAAGCATTTTCATTTCCAGTACCCCATCCTAATGAagcatatttaattt i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34358204 144 + 128595539 CTGGTAAAATGGTTT-TGAGAACTGATTGCTGATGAAGGCTGAATAGGATGGTTGCTGGGGTCTCTGTCTGCT-TGGCAGACAAAGACGAGGATTTGCAAGCATTTTCATTTCCAGTACCCCATCCTAATGAAGCATATTTAATTT i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87845797 139 - 158406734 CTGGCAAGATGG-TT-TGAGAAATTATTGCTGGTGAAGGCTGAATGGGATGGTTGCTGGGGTC----TCTGCT-TGGCAGACAAAGATGAGGATTTGCAAGGATTTTTATTTCCAGGACCTCATCCTAATGAAGTGTATTTAATAT i calJac3.chr6 C 0 C 0 s mm10.chr2 49697388 102 + 182113224 CTGGTGAGATGCTTTCTGAGGAA-------TGGTGAAAGTTGCTTGGGACCATTACTGGG-------TCTGCT-------------GTAAGG----GGAAGCGTTTTTCCTT--GGTATCCTGGCC-----------ATTTAACCT i mm10.chr2 C 0 C 0 s canFam3.chr19 50609057 145 + 53741614 cTGGAAAGTTGGTTT-TAATAAATGATTGCTAGTGGGAATTGAATAAGACCATCCCTGGGATCTCTGCCTGCCACGGTTAACAGAGACCAGGGTCCAGAAGGATTTCTGTTTCTAGTACTTGATACTAATGAAGCATGtttatttt i canFam3.chr19 I 1419 I 266 a score=626079.000000 s hg38.chr2_GL582966v2_alt 12305 196 + 96131 TTGAAACCTTCTTTGCTGTTAGCATA-GGTTGTAGAAGTGTATG-----------------TCTTAATCCTTCCTTAGGAAAGTCTTAATCCTTGCTTAAGAAAGCTTATGATATTACTGATAAGGCAAGGCTTATGCACATGACTAAGATA-------GACTACATCATGTATTA-ATCA---TGATGAAGTCTGAGGAATTTAAAGTGAGGCAGGGGAGGAGG s panTro4.chr2B 153133704 196 + 247518478 TTGAAAACTTCTTTGCTGTTAGCATA-GGTTGTAGAAGTGTATG-----------------TCTTAATCCTTCCTTAGGAAAATCTTAATCCTTGCTTAAGAAAGCTTATGATATTACTGATAAGGCAAGGCTTATGCACATGACTAAGATA-------GAATACATCATGTATTA-ATCA---TGATGAAGTCTAAGGAATTTAAAGTGAGGCAGGGGAGGAGG i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38336758 196 + 135000294 TTGAAACCATCTTTGCAGTTAGCGTA-GGTTGTAGAAGTGTATG-----------------TCTTAATCCTTCCTTAGGAAAGTCTTAATGCTTGCTTAAGAAAGCTTATGATATTACTGATAAGGCAAGGCTTATGCACATGACTAAGATA-------GAATACATCATGTATTA-ATCA---TGATAAAGTCTGAGGAATTTAAAGTGAGGCAGGGGAGGAGG i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82287843 174 - 85365473 TTGAAACCTTCTTTGCTGTTAGCATA-GGTTATAGAAGTGTATG-----------------TCTTAATC----------------------CTTGCTTAAGAAAGCTTATGATATTACTGATAAGACAAGGCTTATGCACATGACTAAGATA-------AAATACATCATGTATTA-ATCA---TGATAAAGTCTGAGGAATTTAAAGTGAGGCAGGGGAGGAAG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11901440 196 + 106825570 TTGAAACATTCTTTGCAGTTAGCATA-GGTTATAGAAGTGTATG-----------------TCTTAATCCTTCCTTAGGAAAGTCTTAATCCTTCCTTAAGAAAGCTTATGATATTACTGATAAGGCAAGGCTTATGCACATGACTAAGATA-------GCCTACATCATGTATTA-ATCA---TGTTAAAGTCTGAGGAATTTAAAGTGAGGCAGGGGAGGAAG i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37605699 196 + 132586672 TTGAAACCTTCTTTGCAGTTAGCATA-GGTTATAGAAGTGTATG-----------------TCTTAATCCTTCCTTAGGAAAGTCTTAATCCTTCCTTAAGAAAGCTTATGATATTACTGATAAGGCAAGACTTATGCACATGACTAAGATA-------GACTACATCATGTATTA-ATGA---TGTTAAAGTCTGAGGAATTTAAAGTGAGGCAGGGGAGGAAG i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11262646 196 + 104110932 ttgaaacattcTTTGCAGTTAGCATA-GGTTATAGAAGTGTATG-----------------TCTTAATCCTTCCTTAGGAAAGTCTTAATCCTTCCTTAAGAAAGCTTATGATATTACTGATAAGGCAAGGCTTATGCACATGACTAAGATA-------GCCTACATCATGTATTA-ATCA---TGTTAAAGTCTGAGGAATTTAAAGTGAGGCAGGGGAGGAAG i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34358348 196 + 128595539 TTGAAACCTTCTTTGCAGTTAGCATA-GGTTATGGAAGTGTATA-----------------TCTTAATCCTTGCTTAGGAAAGTCTTAATCCTTCCTTAAGAAAGCTTATGATATTACTGATAAGGCAAGGCTTATGCACATGACTAAGATA-------GACTACATCATGTATTA-ATCA---TGTTAAAGTCTGAGGAATTTAAAGTGAGGCAGGGGAGGAAG i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87845936 203 - 158406734 TTGAGACCTTCTATGCAGTTAGCATAGGGTTATAGAAGTGTATG-----------------TTTTAATCCTTCCTTAGGAAAGTCTTAATCCTT-CTTAAGAAAGCTTATGATATTACTGATAAGGCAAGGCTTATACACATGACTAAGATACATGTATTAATACATCATGTATTA-ATCA---TGATAAAGGCTGAGGGATTTAAAGTGAGGCAGGGGAGGAAG i calJac3.chr6 C 0 C 0 s mm10.chr2 49697490 158 + 182113224 GGGAGGCCAG-TGCGTGTTTCATATG-GGTTGTAGAGGAATGTG-----------------TCTTAATCTTCC----------------------CTGAAGGAAGCTCCTGGTAGTTC----------AGGC---TACACATGGGCAGGACA-------AACTGTGTCAGGCACTACACTG---TAATAAACTTCAGGGCTTCCACAG---GACCAGCAAGGAAG i mm10.chr2 C 0 C 0 s canFam3.chr19 50609468 193 + 53741614 TTGAGACCTTCTGTGTGCCTA-TATG-GGTCATCGAACTGTATTCAAGAAAGAAAAATAACCTTTAATCTT--------AAGGTCATAATCCTTCCTTAAGAAAGCTTGTGACACTACTGAGAAGGCAAAGCT--------TGCTGAAGGTG-------GAATACGCTGGGTCGTA-ACCAGAGTGATGAAGGCTGA------TGAAGGAACACAGGGGAGGGGG i canFam3.chr19 I 266 I 413 a score=335691.000000 s hg38.chr2_GL582966v2_alt 12501 109 + 96131 TAGTGAATTCTTCAAGGGGAAAGTCATGCTGGAGTAGGAATTTAGAGG---ATGGGGCTTCAGGTAGAGCTAGAAAATCTGATATCTTAAACTGTTGACTAAGATTTTTAGA s panTro4.chr2B 153133900 109 + 247518478 TAGTGAATTCTTCAAGGGGAAAGTCATGCTGGAGTAGGAATTTAGAGG---ATGGGGCTTCAGGTAGAGCTAGAAAATCTGATATCTTAAACTGTTGACTAAGATTTTTAGA i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38336954 109 + 135000294 TAGTGAATTTTTCAAGGGGAAAGTCATGCTGGGGTAGGAATTTAGAGG---ATGGGGCTTCAGGTAGAGCTAGAAAATCTGATATCTTAAACTGTTTACTAAGATTTTTAGA i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82288017 109 - 85365473 TAGTGAATTCTTCAAGGGGAAAGTCATGCTGGAGTAGGAATTTAGAGG---ATAGGGCTTCAGGTAGAGCTAGAAAATCTGATATCTTAAACTGTTGACTAAGATTTTTAGA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11901636 109 + 106825570 TAGTGAATTCTTCAAGGGGAAAGTCATGCTATAGTAGGAATTTAGAGG---ATGGGGCTTCAGGTAGAGCTAGAAAATCTGATATCTTAGACTGTCGACTAAGATTTTTAGA i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37605895 109 + 132586672 TAGTGAATTCTTCAAGGGGAAAGTCATGCTATAGTAGGAATTTAGAGG---ATGGGGCTTCAGGTAGAGCTAGAAAATCTGATATCTTAGACTGTCGACTAAGATTTTTAGA i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11262842 109 + 104110932 TAGTGAATTCTTCAAGGGGAAAGTCATGCTATAGTAGGAATTTAGAGG---ATGGGGCTTCAGGTAGAGCTAGAAAATCTGATATCTTAGACTGTCGACTAAGATTTTTAGA i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34358544 109 + 128595539 TAGTGAATTCTTCAAGGGGAAAGTCATGCTATAGTAGGAATTTAGAGG---ATGGGACTTCAGGTAGAGCTAGAAAATCTGATATCTTAGACTGTTGACTAAGAACTTTAGA i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87846139 109 - 158406734 TAGTGAATTCTTGAAGGGGAAGGTCATGCTGGAGTAGGAACTTAGAGG---ATGGGGCTTCAGGCAGAGCTAGAAAATCTGATACCTTCAACTGTCAGCTAAGATTTTTAGA i calJac3.chr6 C 0 C 0 s mm10.chr2 49697648 73 + 182113224 CTGTGAGCTTCTTGGGGGTTGAG-------AGAGTGGGGTATGGGATGGATATAGGGCTTCTGGCCGACCCTGAGGGTCT-------------------------------- i mm10.chr2 C 0 C 0 e canFam3.chr19 50609661 413 + 53741614 I a score=3805538.000000 s hg38.chr2_GL582966v2_alt 12610 1042 + 96131 TTAACTTCTTTGCTCCTTGAAGACATTTAAAATCTTGTA---TTTCTAGAATGA----------------------------GCATTGTTTTTC------AGAAGAAACAGGGGTCTCAGAT---------------------------------------------AATTTTTAGAATTGACTGGACTT-ACTTCAATGAAATGGATCTATTAGGC-----------------------------------------------------------------------------------ATGACTTGTTATGC-TTTTTA-AATGAGAGGATTGCTACCTAAACCTACATGTTCTTTGTAGAGCAGTAAAC----TA-TTTTCCTTTTCAGACATGAATGAACACAGCTCTAGAAGTCACAGTATCTTCCTGATAAATATTAAACAAGAGAATGTAGAGACTGAAAAAAAACTCAGTGGGAAACTTTATTTGGTTGATTTGGCTGGGAGCGAAAAGGTAATTTGTTCTTTATTTGTATTATCTATAATTTTCCCCTTTTATTTGCTTCATTGTGC-ATGGTATAATTTTTATGC-TTTTCTATTTTCCTGCTTTAAAGAGCTTTTAAAGTTTCTGAGGC----TCTGCCAAGGTGTTATTACATTTAACCCTT-TGTCCCTGCTTTCTTTTCTGGTCCTGAG--------GTCTCCTATTGGTGTCACAGGCAGGTGCTTTGCATGCCAACTCTGATTTATCCCTGATGGGC--CCTTATGATGATATGAGGCAACAGTTGGTTTGACTT-AGCCTGTGGCAGAGGCAGCTGCACACATGTGGGAGGGATATGAACTTCTGAGAAAAGAGA-AAATCCCATGTTGTACCCGACTC----TAATAGGCCAGGAACGAGCTTTGCCATTGGAATGTGG-CAGTCCTGCCTCTGCAGGTTTGTTTTGCTGATAGAAGGTCTGGAACCTGGGGCGCTCCCTGCATTCCCTGGTTCTCCCAGCAGTAGGCATGGGCTGACGGTG----TCCCATGTGGAAGGCCTTGGCTCTCTCATGAAGTGTGGCCTGTAATCAGCCTCAGCGGCAAGCCTTTACTGTTCTCTGG-TTTTGTCCGGATTCTCTTTTGTCGTCTACACCCTGACCCATGCCCTCCCAGGCCCTGGCTGGGGCTGTACTCCAGAGC-AATAGGCTTCCCAGAATCT---------------CCAGTCTCACTTCCATAGCACCA s panTro4.chr2B 153134009 1043 + 247518478 TTAATTTCTTTGCTCCTTGAAGACATTTAAAATCTTGTA---TTTCTAGAATGA----------------------------GCATTGTTTTTC------AGAAGAAACAGGGGTCTCAGAT---------------------------------------------AATTTTTAGAATTGGCTGGACTT-ACTTCAATGAAATGGAGCTATTAGGC-----------------------------------------------------------------------------------ATGACTTGTTATGC-TTTTTA-AATGAGAGGTTTTCTACCTAAACCTACATGTTCTTTGTAGAGCAGTAAAC----TA-TTTTCCTTTTCAGACATGAATGAACACAGCTCTAGAAGTCACAGTATCTTCCTGATAAATATTAAACAAGAGAATGTAGAGACTGAAAAAAAACTCAGTGGGAAACTTTATTTGGTTGATTTGGCTGGGAGCGAAAAGGTAATTTGTTCTTTATTTGTATTATCTATAATTTTCCCCTTTTATTTGCTTCATTGTGCAATGGTATAATTTTTATGC-TTTTCTATTTTCCTGCTTTAAAGAGCTTTTAAAATTTCTGAGGC----TCTGCCAAGGTGTTATTACATTTAACCCTT-TGTCCCTGCTTTCTTTTCTGGTCCTGAG--------GTCTCCTGTTGGTGTCACAGGCAAGTGCTTTGCATGCCAACTCTGATTTATCCCTGATGGGC--CCTTATGATGATATGAGGCAATAGTTGGTTTGACTT-AGCCTGTGGCAGAGGCAGCTGCACACATGTGGGAGGGATATGAACTTCTGAGAAAAGAGA-AAATCCCATGTTGTACCCGACTC----TAATAGGCCAGGAACGAGCTTTGCCATTGGAATGTGG-CAGTCCTGCCTCTGCAGGTTTGTTTTGCTGATAGAAGGTCTGGAACCTGGAGCGCTCCCTGCATTCCCTGGTTCTCCCAGCAGTAGGCATGGGCTGATGGTG----TCCCATGTGGGAGGCCTTGGCTCTCTCATGCAGTGTGGCCTGTAATCAGCCTCAGCGGCAAGCCTTTACTGTTCTCTGG-TTTTGTCCGGATTCTCTTTTGTCGTCTACACCCTGACCCATGCCCTCCCAGGCCCTGGCCGGGGCTGTACTCCAGAGC-AATAGGCTTCCCAGAATCT---------------CCAGTCTCACTTCCATAGCACCA i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38337063 1028 + 135000294 TTAATTTCTTTGCTCCTTGAAGACATTTAAAATCTTGTA---TTTCTAGAATGA----------------------------GCATTGTTTTTC------AGAAGAAACAGGGGTCTCAGAT---------------------------------------------AATTTTTAGAATTGGCTGGACTT-ACTTCAATGAAATGGAGCTATTAGGC-----------------------------------------------------------------------------------ATGACTTGTTATGC-TTTTTA-AATGAGAGGTTTGCTACCTAAACCTACATGTTCTTTGTGGAGCAGTAAAC----TG-TTTTCCTTTTCAGACATGAATGAACACAGCTCTAGAAGTCACAGTATCTTCCTGATAAATATTAAACAAGAGAATGTAGAGACTGAAAAAAAACTCAGTGGGAAACTTTATTTGGTTGATTTGGCTGGGAGCGAAAAGGTAATTGGTTCTTTATTTGTATTATCTATAATTTTCCCCTTTTATTTGCTTCAGTGTGCAATGGTATAATTTTTATGC-TTTTCTATTTTCCTGCTTTAAAGAGCTTTTAAAGTTTCTGAGGC----TCTGCCAAGGTGTTATTACATTTAACCCTT-TGTCCCTG-TTTCTTTTCTGGTCCTGAG--------GTCTCCTATTGGTGTCACAGGCAGGTGCTTTGCATGCCAACTCTGATTTATCCCTGATGGGC--CCTTATGATGATGTGAGGCAACAGTTGGTTTCACTT-AGCCTGTGGCAGAGACAGCTGCACACATGTGGGAGGGATATGAACTTCTGAGAAAAGAGA-AAATCCCGTGTTGTACCCGACTG----TAATAGGCCAGGAACGAGCTTTGCCATTGGAATGTGG-CAGTCCTGCCTCTGCAGGTTTGTTTTGCTGATAGAAGGTCTGGAACCTGGGGCGCTCCCTGCATTCCCTGGTTCTCCCAGCAGTAGGCAT-GGCTGACGGTG----TCCCATGTGGGAGGCCTTGGCTGTCTCATGAAGTGGGGCCTGTAATCAGCCTTAGCGGCAAGCCTTTACTGTTCTCTGG-TTTTGTCCGGACTCTCTTCTGTCGTCTACACCCTGACCCATGCCCTCCCAGGCCCTGGCCGGGGCTGTACTCCAGAGC-AATAGGCTTCTCAGAATCT---------------CCAGT-------------CACCA i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82288126 1043 - 85365473 TTAAATTCTTTGCTCCTTGAAGACATTTAAAATCTTGTA---TTTCTAGAATGA----------------------------GCATTGTTTTTC------AGAAGAAACAGGGGTCTCAGAT---------------------------------------------AATTTTTAAAATTGGCTGGACTT-ACTTCAATGAAATGGAGCTATTAGGC-----------------------------------------------------------------------------------ATGACTTATTATGC-TTTTTA-GATGAGAGGTTTGCTACCTAAACCTACATGTTCTTTGTAGAGCAGTAAAC----TA-TTTTCCTTTTCAGACATGAATGAACACAGCTCTAGAAGTCACAGTATCTTCCTGATAAATATTAAACAAGAGAATGTAGAGACTGAAAAAAAACTCAGTGGGAAACTTTATTTGGTTGATTTGGCTGGGAGCGAAAAGGTAATTGGTTCTTTATTTGTATTATCTACAATTTTCCCCTTTCATTTGCTTCAGTGTGCAATGGTATAATTTTTATGC-TTTTCTATTTTCCTGCTTTAAAGAGCTTTTAAAGTTTCTGAGGC----TCTGCCAAGGTGTTATTACATTTAACCCTT-TGTCCCTGCTTTCTTTTCTGGTCCTGAG--------GTCTCCTATTGGTGTCACAGGCAGGTGCTTTGCATACCAACTCTGATTTATCCCTGATGGGC--CCTTATGATGATTTGAGGCAACAGTTGGTTTGACTT-AGCCTGTGGCAGAGGCAGCTGCACACATGTGGGAGGGATATGAACTTCTGAGAAAAGAGA-AAATCCCATGTTGTACCCGACTC----TAATAGGCCAGGAACGAGCTTTGCTATTGGAATGTGG-CAGTCCTGCCTCTGCAGGTTTGTTTTGCTGATAGAAGGTCTGGAACCTGGGGCGCTCCCTGCATTCCCTGGTTCTCCCAGCAGTAGGCATGGGCTGACGGTG----TCCCATGTGGGAGGGTTTGGCTCTCTCATGAAGTGTGGCCTGTAATCAGCCTTAGTGGCAAGGCTTTACTGTTCTCTGG-TTTCGTCCGGACTCTCTTTTGTCATCTACACCCTGACCCATGCCCTCCCAGGCCCTGGCCGAGGCTGTACTCCAGAGC-AATAGGACTCCCAGAATCT---------------CCAGTCTCACTTCCATGGCACCA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11901745 1043 + 106825570 TTAATTTCTTTGCTCCTTGAAGACATTTAAAATCTTGTC---TTTCTAGAATGA----------------------------GCATTGTTTTTC------AGAAGAAACAGGGGTCTCAGAT---------------------------------------------AATTTTTAAAAGTGGCTGGACTT-ACTTCAATGAAATGGAGCTACTAGGC-----------------------------------------------------------------------------------ATGACTTGTTATGC-TTTTCA-GATGAGAGGTTTGCTACCTAAACCTACATGTTCTTTGTAGAGCAGTAAAC----TA-TTTTCCTTTTCAGACATGAATGAACACAGCTCTAGAAGTCACAGTATCTTCCTGATAAATATTAAACAAGAGAATGTAGAGACTGAAAAAAAACTCAGTGGGAAACTTTATTTGGTTGATTTGGCTGGGAGCGAAAAGGTAATTGGTTCTTTATTTGTATTATCTATAATTTTCCCCTTTTATTTGCTTCACTGTGCAATGGTATAATTTTTATGC-TCTTCTATTTTCCTGCTTTAAAGCACGTTTAAAGGTTCTGAGGC----TCTGCCAAGGTGTTATTACATTTAACCCTT-TTTCCCTGCTTTCTTTTCTGGTCCTGAG--------GTCTCTTATTGGTGTCGCAGGCAGGTACTTTGCATGCCAACTCTGATTTATCCCTGATGGGC--CCTTATGATGATGTTAGGCAAGAGTTGGTTTGACTT-AGCCTGTGGCAGAGGCAGCTGCACACATGTGGGAGGGATATTAACTTCTAAGAAAAGAAT-AAATCCCATGTTGTACCTGACTC----TAATAGGCCAGCAACGAGCTTTGCCATTGGAATGTGG-CAGTCCTGCCTCTGCAGGTTTGTTTTGCTGATAGAAGGTCTGGAACCTGGGGCACTCCCCGCATTCCCTGGTTCTCCCAGCAGTAGGCATGGGCTGACGGTA----TCCCATGTGGGAGTCCTTGGCTGTCTCATGCAGCGCGGCCTGTAATCAGCCTTAGCTGCAAGCCTTTACTGTTCTCTGG-TTTTATCTAGACTCTCTTTTGTTGTCTACACCCTGACCCATGCCCTCCCAGGCCCTGGCTGGGGCTGTACTCCAGAGC-AATAGGCTTCCCAGAATCT---------------CCAGTCTCACTTCCATAGCACCA i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37606004 1043 + 132586672 TTAATTTCTTTGCTCCTTGAAGACATTTAAAATCTTGTC---TTTCTAGAATGA----------------------------GCATTGTTTTTC------AGAAGAAACAGGGGTCTCAGAT---------------------------------------------AATTTTTAAAAGTGGCTGGACTT-ACTTCAATGAAATGGAGCTACTAGGC-----------------------------------------------------------------------------------ATGACTTGTTATGC-TTTTTA-GATGAGAGGTTTGCTACCTAAACCTACATGTTCTTTGTAGAGCAGTAAAC----TA-TTTTCCTTTTCAGACATGAATGAACACAGCTCTAGAAGTCACAGTATCTTCCTGATAAATATTAAACAAGAGAATGTAGAGACTGAAAAAAAACTCAGTGGGAAACTTTATTTGGTTGATTTGGCTGGGAGCGAAAAGGTAATTGGTTCTTTATTTGTATTATCTATAATTTTCCCCTTTTATTTGCTTCAGTGTGCAATGGTATAATTTTTATGC-TCTACTATTTTCCTGCTTTAAAGAGCTTTTAAAGGTTCTGAGGC----TCTGCCAAGGTGTTATTACATTTAACCCTT-TTTCCCTGCTTTCTTTTCTGGTCCTGAG--------GTCTCTTATTGGTGTCGCAGGCAGGTACTTTGCATGCCAACTCTGATTTATCCCTGATGGGC--CCTTATGATGATGTTAGGCAAGAGTTGGTTTGACTT-AGCCTGTGGCAGAGGCAGCTGCACACATGTGGGAGGGATATTAACTTCTAAGAAAAGAGT-AAATCCCATGTTGTACCTGACTC----TAATAGGCCAGGAACGAGCTTTGCCATTGGAATGTGG-CAGTCCTGCCTCTGCAGGTTTGTTTTGCTGATAGAAGGTCTGGAACCTAGGGCACTCCCTGCATTCCCTGGTTCTCCCGGCAGTAGGCATGGGCTGACGGTA----TCCCATGTGGGAGTCCTTGGCTGTCTCATGCAGTGCGGCCTGTAATCAGCCTTAGCTGCAAGCCTTTACTGTTCTCTGG-TTTTATCCAGACTCTCTTTTGTTGTCTACATCCTGACCCATGCCCTCCCAGGCCCTGGCTGGGGCTGTACTCCAGAGC-AATAGGCTTCCCAGAATCT---------------CCAGTCTCACTTCCATAGCACCA i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11262951 1043 + 104110932 TTAATTTCTTTGCTCCTTGAAGACATTTAAAATCTTGTC---TTTCTAGAATGA----------------------------GCATTGTTTTTC------AGAAGAAACAGGGGTCTCAGAT---------------------------------------------AACTTTTAAAAGTAGCTGGACTT-ACTTCAATGAAATGGAGCTACTAGGC-----------------------------------------------------------------------------------ATGACTTGTTATGC-TTTTTA-GATGAGAGGTTTGCTACCTAAACCTACATGTTCTTTGTAGAGCAGTaaac----ta-ttttccttttcagACATGAATGAACACAGCTCTAGAAGTCACAGTATCTTCCTGATAAATATTAAACAAGAGAATGTAGAGACTGaaaaaaaaCTCAGTGGGAAACTTTATTTGGTTGATTTGGCTGGGAGCGAAAAGGTAATTGGttctttatttgtattatctataattttccccttttatttGCTTCAGTGTGCAATGGTATAATTTTTATGC-TCTTCTATTTTCCTGCTTTAAAGAGCTTTTAAAGGTTCTGAGGC----TCTGCCAAGGTGTTATTACATTTAACCCTT-TttccctgctttcttttctggTCCTGAG--------GTCTCTTATTGGTGTCGCAGGCAGGTACTTTGCATGCCAACTCTGATTTATCCCTGATGGGC--CCTTATGATGATGTTAGGCAAGAGTTGGTTTGACTT-AGCCTGTGGCAGAGGCAGCTGCACACATGTGGGAGGGATATTAACTTCTAAGAAAAGAGT-AAATCCCATGTTGTACCTGACTC----TAATAGGCCAGGAACGAGCTTTGCCATTGGAATGTGG-CAGTCCTGCCTCTGCAGGTTTGTTTTGCTGATAGAAGGTCTGGAACCTGGGGCACTCCCTGCATTCCCTGGTTCTCCCAGCAGTAGGCATGGGCTGACGGTA----TCCCATGTGGGAGTCCTTGGCTGTCTCATGCAGTGCGGCCTGTAATCAGCCTTAGCTGCAAGCCTTTACTGTTCTCTGG-TTTTATCCAGACTCTCTTTTGTTGTCTACATCCTGACCCATGCCCTCCCAGGCCCTGGCTGGGGCTGTACTCCAGAGC-AATAGGCTTCCCAGAATCT---------------CCAGTCTCACTTCCATAGCACCA i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34358653 1127 + 128595539 TTAATTTCTTTGCTCCTTGAAGACATTTAAAATCTTGTC---TTTCTAGAATGA----------------------------GCATTGTTTTTC------AGAAGAAACAGGGGTCTCAGAT---------------------------------------------AATTTTTAAAAGTGGCTGGACTT-ACTTCAATGAAATGGAGCTACTAGGCCTGACTTGTTATGCTTTTTAGATGACAGGTTTGCTACCTAAACCTACATGTTCTTTGTAGAGCAGTAAACTATTNNNNNNNNNNTGACTTGTTATGC-TTTTTA-GATGACAGGTTTGCTACCTAAACCTACATGTTCTTTGTAGAGCAGTAAAC----TA-TTTTCCTTTTCAGACATGAATGAACACAGCTCTAGAAGTCACAGTATCTTCCTGATAAATATTAAACAAGAGAATGTAGAGACTGAAAAAAAACTCAGTGGGAAACTTTATTTGGTTGATTTGGCTGGGAGCGAAAAGGTAATTGGTTCTTTATTTGTATTATCTATAATTTTCCCCTTTTATTTGCTTCAGTGTGCAATGGTATAATTTTTATGC-TCTTCTATTTTCCTGCTTTAAAGAGCTTTTAAATGTTCTGAGGC----TCTGCCAAGGTGTTATTACATTTAACCCTT-TTTCCCTGCTTTCTTTTCTGGTCCTGAG--------GTCTCTTATTGGTGTCGCAGGCAGGTACTTTGCATGCCAACTCTGATTTATCCCTGATGGGC--CCTTATGATGATGTTAGGCAAGAGTTGGTTTGACTT-AGCCTGTGGCAGAGGCAGCTGCACACATGTGGGAGGGATATTAACTTCTAAGAAAAGAGTAAAATCCCATGTTGTACCTGACTC----TAATAGGCCAGGAATGAGCTTTGCCATTGGAATGTGG-CAGTCCTGCCTCTGCAGGTTTGTTTTGCTGATAGAAGGTCTGGAACCTGGGGCACTCCCTGCATTCCCTGGTTCTCCCAGCAGTAGGCATGGGCTGACGGTA----TCCCATGTGGGAGTCCTTGGCTGTCTCATGCAGTGCGGCCTGTAATCAGCCTTAGCTGCAAGCGTTTACTGTTCTCTGG-TTTTATCCAGACTCTCTTTTGTTGTCTACACCCTGACCCATGCCCTCCCAGGCCCTGGCTGGGGCTGTACTCCAGAGC-AATAGGCTTCCCAGAATCG---------------CCAGTCTCACTTCCATAGCACCA i chlSab2.chr10 C 0 I 292 s calJac3.chr6 87846248 1007 - 158406734 TTAATTTCTTTGCTCCTTGAAGATATTTAAATTTTTTTTTTGTTTCTAGAATGA----------------------------GCATTGTTTTTC------AGAAGAAACA-GGGTCTCAGAT---------------------------------------------AATTTTTTAAATTGGCTGGACTTAACTTCAATGAAATGGAGCTATTAGGC-----------------------------------------------------------------------------------GTGACTTGTTATGT-TTTTTA-GATG--AGGTTTG----CTAAATGTCCGTGTTCTTTGTAGAGCAGTAAAC----TA-TTTTCCTTTTCAGACATGAATGAACACAGCTCTAGAAGTCACAGTATCTTCCTGATAAATATTAAGCAAGAGAATGTAGAGACGGAAAAAAAACTCAGTGGGAAACTTTATTTGGTTGATTTGGCTGGGAGTGAAAAGGTAATTGGTTCTTTATTTGTATTATCTATAATTTTCCCCTTTTATTTGCTTCAGTGTGCAATGGTATAATTTTCATGC-CCTTCTATTTTCCTGCTTTAAAGAGCATTTAAAGTTTCTGAGGC----TCTGCCAAGGTGTTATTACGTGTAACCCT-----------TTTCT------GTCCTGAG--------GTCTCCTATTGGTGTCAGGGGCAGGTGCTTTGCCTGCCAACTCTGATTTATCCCTGATGGGC--CCTGATGATGATGTTAGGCAAGTGTTGGTTCGACTT-AGCCTGTGGCAGAGGCAACTGCACACATGTGGGAGGGATATGAACTTCCGAGAAAAGAGA-AAATCCTGTGTTGTACCTGACTC----TAATAGGCCAGGAACGAGCTTTGCTATGGGAATGCGG-CAGTCCTGCCTCTGCAGGTTTGTTTTGCTGATGGAAGATCTGGAACCTGGGGCTCTCCATGCATTCCCTGGTTCTCCCAGCAGTAGGCCGGGGCTGTCCATG----TCCCATGTGGGAGGCCTTGGTTCTCTCAGGCAGTGCAACCTGTAATCAGCCTTAGCCACAAGCCGTTACTGTTCTCTGG-TTTTGTGTGGACTCTCTTTTGTTGTCGATACCCTGA-----------------CCTGGCCAGGGCTGTACTCCAGAGC-AGTAGGCTTCCCAGAATCT---------------CCAGTCTTACTCCCATTGTACCA i calJac3.chr6 C 0 C 0 s mm10.chr2 49697721 1009 + 182113224 TTAATTCCTTTGTTACTTGAAGGCACTGTAAATCTGCCC---TCTCTACAATGAATGAACTTTtttgtttgtttgtttgtttgtttTGTTTCTTTTTAAAAGAAGAAACAGTGGCCTCAGAT---------------------------------------------GCGTCCCCAAATTGGCTTCACCA-GCTGCAGAGAGCTGCAGCAGGGTGAC-----------------------------------------------------------------------------------ATGATTGGCTGTGT-TTTGAAGGACTAGAGGTCTGCTGCCCGTGCTGCCGAGCTCTCTGCGGAGCAGTAAGCCATTTA-TTTTCCTTTTCAGACATGAACGAACACAGCTCTAGGAGTCACAGTATCTTCCTGATTAACATTAAGCAAGAGAATGTGGAGACTGAAAAAAAACTCAGCGGGAAGCTGTATTTGGTTGATTTGGCTGGGAGTGAAAAGGTAATTGGTTC-TTATTTATATTATCTGTAATTTCTCCCTGCTATTTGCTCAAGTGTACAGTTGTAGAAGTTCTGTGC--CTTTTACTTCCTGGTTTTAAAGAAGTTTGAAGTGT--TGAGG----------CATGGTACTATCGTGTTT-----------CTTTGCATTCTCATTTTGTCCTGTGGGCTAAGAGTCGCCAGTTCCCTTCAGAGGCATGTGTGTCAGAGG----CTCTGATTCATTGATGCTTGGTAGCCT----AGGGCTTTAAGCAGGTGTTAGTATGACTT-AGCC--TAGCA-AGGCAGCTGCA-AAAGGTGGGATGGGCG-----CCCTTAGGATGGAAG-GAGCCATCTGATTTCATGGACTCCATACAGTAGGCTCGGGA-GGGCTCTCCCCCTGGGACATGGTTGGCCCTGCTTCTGTACCTTTGCCTTGCTGAGGAAAGGTCTGGAACCT-GGGCTCTGCCAGTGTTTCC--GTTCTCCTGGAAGTGGGTTTGAAGTAACAGGGGACCTTTCATATGGGTGACCTTGG---------------------GTCATCCGGTT----GGAAAGGC-------TTCTTTGG-TTTTGTTGTGATTCTCTTTCCACACCT-CGCTCTGTTCTATGCC--CCCAGGCACCGGCTAAGACCACATCCT------------CTTCCCA----TG---------------CCAGCCCC-CTTCCACAGCACCA i mm10.chr2 C 0 C 0 s canFam3.chr19 50610074 1038 + 53741614 TTAAGTTTTTTGCCATGTGAAGATATTTTAAATCTTttg---ttgtt---gttg----------------------------ttgttgttTTTA--------AAGAAACAGAGGTCTCAGATACtatttatttatttatttatttTTATTTTATTTTTTTTTCAGAGACTTTTTAAAATTGG----ACTT-AACTTGAAAAACTGGAGCGATTACGC-----------------------------------------------------------------------------------ATGATTCGTTGTGCTTTTTTA-GATGAGAGGCCTGCTACCTAAACTTCC-TATCCTTTGCAGAGCAGTAAAC----TATTTTTCCTTTTCAGACATGAATGAACACAGCTCTAGAAGTCACAGTATCTTCCTGATTAATATTAAACAAGAGAATGTAGAGACCGAAAAAAAGCTCAGTGGGAAGCTTTATCTAGTTGACTTGGCTGGGAGCGAAAAGGTAATTGGTTCCTTATTTGTATTATCTGTAATTTT-CCCTGTTATTTGCTTCAGTGTGCAGTGGTATAATTTTTATGCCCTTTCCATTCCCTGGTTTTAAAGCGCTGTTAAAGTCTCTGGTGTGGTGCCAGCCAGCACGCTATTAAATTTCACCTTCGTTTCCCGGCTCTCCTTTCTGGTCCTGAA--------GTCCCCTCTTCTCATCAAAGG-AGGTACTTTGATTGCCAGCTTGGATTTATGCTGACCTGGC--CCCAGTGATGACGTTAGGTCCGCGCTGGTGTGAATTCAGCCCG-GGCAGAGGCCGTCGTGCGAATGC-GGAGGGACGTGA---CCTGTGGAAAGGGA-GGATCCTGTCTTGTGCCAGATTC----ACGTGGGCCAGAAACGGACCCTGCCG-AGGACTGAGG-CAGTCCTGCCCCTGCAGGATTG-CTTGCCCGGAGGAGACCTGGAACCTGGGGCTCTCTCTGCA---------------------------------ATAGGG----CCTCACGTGGGCAGCTGTGCTTCCTTTAGGCCGTGAGGCTTG-----------------ACGCCCTGCCCCTTCTCTGGTTTTTGTCCGGGCTCTCCTTTGGGGTCT-------GTCCCATGGTCTCCTAGGAGCTGGCCACAGCCGTCCTTTAGACCAAACAGGCTCCCCAGAACCTCCCACCTGCCCCCTCCCGGCCCCACTGCCACAGCACTA i canFam3.chr19 I 413 C 0 a score=1956.000000 s hg38.chr2_GL582966v2_alt 13652 4 + 96131 GTGG s panTro4.chr2B 153135052 4 + 247518478 CTGG i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38338091 4 + 135000294 GTGG i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82289169 4 - 85365473 GTGG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11902788 1 + 106825570 ---A i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37607047 1 + 132586672 ---A i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11263994 1 + 104110932 ---A i papAnu2.chr12 C 0 C 0 s calJac3.chr6 87847255 4 - 158406734 GTGG i calJac3.chr6 C 0 C 0 s mm10.chr2 49698730 4 + 182113224 GGGG i mm10.chr2 C 0 C 0 s canFam3.chr19 50611112 4 + 53741614 GCAG i canFam3.chr19 C 0 C 0 e chlSab2.chr10 34359780 292 + 128595539 I a score=1265361.000000 s hg38.chr2_GL582966v2_alt 13656 336 + 96131 AGGCTTCTGCTGCCACACCCTGTCTGGAGGCACTGACCTCCCTCGAGCAACATCATAGAGCAAGGCCATGTGCACAATGCCCTCTGGCCTCCATCATCACTGACATCATGCTGATTGTCCCCATGAAGGCCAGCCTTGAAGCTTGGTCAGTCTCCCTAACTGTATGATTGATCCCCACTT-ATTGCACTACATCACTGAGTT-CCCGTATGCCAAGTTATGGCCACTTACATCCACGTGAGTAATGGTTACTTGGATTGTCCTCTAGTATGCATTTGTAAAACC-TGAGCAGAAAGTCATCCGGGTATT------------TCTAGTTGGGAATCTAAAATTTTACTAGTA s panTro4.chr2B 153135056 337 + 247518478 AGGCTTCTGCTGCCACACCCTGTCTGGAGGCACTGACCTCCCTCGAGCAACATCATAGAGCAAGGCCATGTGCACAATGCCCTCTGGCCTCCATCATCACTGACATCATGCTGATTGTCCCCATGAAGGCCAGCCTTGAAGCTTGGTCAGTCTCCCTAACTGTATGATTGATCCCCACTT-ATTGCACTACATCACTGAGTT-CCCGTATGCCAAGTTATGGCCACTTACATCCACGTAAGTAATGGTTACTTGAATTGTCCTCTAGTATGCATTTGTAAAACCGTGAGCAGAAAGTCATCCGGGTATT------------TCTAGTTGGGAATCTAAAATTTTACTAGTA i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38338095 337 + 135000294 AGGCTTCTGCTGCCACACCCTGTCTGGAGGCACTGACCTCCCTCGAGCAACATCATAGAGCAAGGCCATGTGCACAGTGCCCTCTGGCCTCCATCATCACTGACATCATGCTGATCGTCCCCATGAAGGCCAGCCTTGAAGCTTAGTCAGTCTCCCTAACTGTATGATTGATCCCCACTT-ATTGCACTACATCACTGAGTT-CCCGTATGCCAAGTTATGGCCACTTACATCCACGTAAGTAATGGTTACTTGGATTGTCCTCTAGTATACATTTGTAAAACCATGAGCAGAAAGTCATCTGGGTATT------------TCTAGTTGGGAATCTAAAGTTTTACTAGTA i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82289173 337 - 85365473 AGGCTTCTGCTGCCACACCCTGTCGGGAGGCACTGACCTCCCTGGAGCAACATCACAGAGCAAGGCCATGTGCACAATGCCCTCTGGCCTCCATCATCACTGATATCATGCTGATTGTCCCCATGAAGGCCAGCCTTGAAGCTTGGTCAGTCTCCCTAACTGTATGATTGATCCCCACTC-ATTGCACTACATCACTGAGTT-CCCATATGCCAAGTTATGGCCACTTACATCCACGTAAGTAATGGTTACTTGGATTGTCCTCTAGTATGCATTTGTAAAACCGTGAGCAGAAAGTCATCTGGGTATT------------TCTAGTTGAGAATCTAAAATTTTACTAGTA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11902789 337 + 106825570 AGACTTCTGCTGCCAAGCCCTGTCTCGAGGCACTGATCTCCCTTGAGCAACATCACAGAGCAAGGCCATGTGCACAATGCCCTCTGGCCTCCATCATCACTGACATCATGCTGATTGTCCCCATGAAGGCCAGCCTTGAAGCTTGGTCAGTCTCCCTAACTGTATGATTGATCACTACTT-ATTGCACTACACCACTGAGTT-CCCATATGCCAAGTTATGGCGACTTACATCCAAGTAAGTAATGGTTACTTGGATTGTCCTCTAGTATGCATTTGTAAAACCGTGAGCGGAAAGTCATCTGTGTATT------------TCTAGTTGGGAATCTAAAATTTTACTAGTA i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37607048 337 + 132586672 AGACTTCTGCTGCCAAGCCCTGTCTCGAGGCACTGATCTCCCTTGAGCAACATCACAGAGCAAGGCCACGTGCACAATGCCCTCTGGCCTCCATCATCACTGACATCATGCTGATTGTCCCCATGAAGGCCAGCCTTGAAGCTTGGTCAGTCTCCCTAACTGTATGATTGATCACTACTT-ATTGCACTACACCACTGAGTT-CCCATATGCCAAGTTATGGCGACTTACATCCAAGTAAGTAATGGTTACTTGGATTGTCCTCTAGTATGCATTTGTAAAACCGTGAGCGGAAAGTCATCTGTGTATT------------TCTAGTTGGGAATCTAAAATTTTACTAGTA i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11263995 337 + 104110932 AGACTTCTGCTGCCAAGCCCTGTCTCAAGGCACTGATCTCCCTTGAGCAACATCACAGAGCAAGGCCACGTGCACAATGCCCTCTGGCCTCCATCATCACTGACATCATGCTGATTGTCCCCATGAAGGCCAGCCTTGAAGCTTGGTCAGTCTCCCTAACTGTATGATTGATCCCTACTT-ATTGCACTACACCACTGAGTT-CCCATATGCCAAGTTATGGCGACTTACATCCAAGTAAGTAATGGTTACTTGGATTGTCCTCTAGTATGCATTTGTAAAACCGTGAGCGGAAAGTCATCTGTATATT------------TCTAGTTGGGAATCTAAAATTTTACTAGTA i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34360072 337 + 128595539 AGACTTCTGCTGCCAAACCCTGTCTCGAGGCACTGATCTCCCTGGAGCAACATCACAGAGCAAGGCCATGTGCACAATGCCCTCTGGCCTCCATCATCACTGACATCATGTTGATTGTCCCCATGAAGGCCAGCTTTGAAGCTTGGTCAGTCTCCCTAACTGTATGATTGATCCCTACTT-ATTGCACTACACCACTGAGTT-CCTATATGCCAAGTTATGGCGACTTACATCCAAGTAAGTAATGGTTACTTGGATTGTCCTCTAGTATGCATTTGTAAAACCGTGAGCGGAAAGTCATCTGTGTATT------------TCTAGTTGGGAATCTAAAATTTTACTAGTG i chlSab2.chr10 I 292 C 0 s calJac3.chr6 87847259 338 - 158406734 AGGCTTCTGCTGCCACAACCTGGCTGGAGGCACTGACCTCCCTTGAGCAACATCACAGAGCAAGCCCATGTGCACAATGCCCTCTGGCCTCCATCACCACTGACATCATGCTGATTGCCCCCTTCAGGGCCAGGCTTGGAGCTTGGTCAGTCTCCCTAACTGTATGATTGATCCCCACTTAACTGCACTACGCCACTGAGTTCCCCGTATGCCAAGTTATGGCCACTAACATTTACGTAAGTAATGGTTTCTTGGATTGTCCTCTAGTATGCATTTGTAAAA-TGTGAGCAGAAAGTCATCTGGGTATT------------CCTAGTTGGGAATCTAAAATTTTACTAGTA i calJac3.chr6 C 0 C 0 s mm10.chr2 49698734 286 + 182113224 ATGTTCCCATGGCCATACTCTGGC---GGGCACAAGC--CCTGTAGACAGCATCATAGAGCCAGCATACATGCACAAT-TTCTATTTCTGCCATCATCAGTGACATCA-GCTGGTTGTTCTCATCAGAGCAGGTCCTGAAGTACTGTCAGTCTCCCTAGCTATACAGGTGATTGCCACTC-ATGGCCTCACACTGCTAAGTT-CCTGAAC-CCTAACTATGGCTACACACATCCCCGTAAGTCATGGCT-TTTGAATTGTCCTCT------------------------------------------TA------------CTTGGCTGGGCATCTCAAATGTTATGTGTG i mm10.chr2 C 0 C 0 s canFam3.chr19 50611116 343 + 53741614 AGGTCCCTGCTGCCACACCCAGTTTCGGGGCACTG-CTTGCCTTGGGTGACCTCACAGAGCAAGTCCCTGCGCCCAATCCCAGGTGGCCTCCATCATCGCTGACATCGTGCTGACCGTCCCCAGCAGGGCTGGCCCTGAAGCTCGGCCAGTCTCCTGAACTGCGTCATTGACCTCCGCTT-ACTGTGCCCCACCACTGAGTT-GCTCTCCGCCAGGTTATGGCCACTAATGCCCACGTAAGTAACGGCCACTTGAAGTGTCCTCCTGTACACATCTG-----CCATGAGCGGAAAGTCCTCTGGATATTGCTGGAAAGTCCTCTGATTGGGAATCCCGACTTACGCTGGTA i canFam3.chr19 C 0 I 195 a score=4095.000000 s hg38.chr2_GL582966v2_alt 13992 1 + 96131 T s panTro4.chr2B 153135393 1 + 247518478 T i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38338432 1 + 135000294 T i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82289510 1 - 85365473 T i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11903126 1 + 106825570 T i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37607385 1 + 132586672 T i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11264332 1 + 104110932 T i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34360409 1 + 128595539 T i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87847597 1 - 158406734 T i calJac3.chr6 C 0 C 0 s mm10.chr2 49699020 1 + 182113224 T i mm10.chr2 C 0 C 0 e canFam3.chr19 50611459 195 + 53741614 I a score=93277.000000 s hg38.chr2_GL582966v2_alt 13993 212 + 96131 GGggccgggtgcagtggctcacgcctgtaatcccagcactttgggaggccgaggtgggcggatcatgaggtcaggagatcgagaccatcctggctaacatggtgaaaccgtgtctcaactaaaaattaaaaaaaaaaaaaaaaattagccaggcatggtggcgggcacctgtagtcccagctactcgggaggctgaggcaggagaatggcgt s panTro4.chr2B 153135394 211 + 247518478 GGggccgggtgcggtggctcacgcctgtaatcccagcactttgggaggccgaggtgggcggatcatgaggtcaggagttcgagaccatcctggctaacatggtgaaaccgtgtctcaactaaaaatt-aaaaaaaaaaaaaaaattagctaggcgtggtggcaggcacctgtagtcccagctactcgggaggctgaggcaggagaatggtgt i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38338433 210 + 135000294 GGggccgggcacggtggctcacgcctgtaatcccagcactttgggaggccgaggcaggtggatcacgaggtcaggagatcaagaccatcctggctaacatggtgaaaccctgtctcaactaaaaatt--aaaaaaaaaaaaaaattagccaggtgtggtggcgggcacctgtagtcccagctactcgggaggctgaggcaggagaatggcat i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82289511 208 - 85365473 GGggccgggcgtggtggctcatgcctgtaatcccagcactttgggaggccgaggcgggcggatcacgaggtcaggagatcgagaccatcctggctaacatggtgaaaccccgtctcaactaaaaatt--aaaaaaaaaaaaaaa--agccaggcgtggtggcgggcacctgtagtcccagctactcgggaggctgaggcaggagaatggtgt i nomLeu3.chr20 C 0 C 0 s mm10.chr2 49699021 49 + 182113224 --------------------------------------------------------------------------------------------------------------------------------------------------------------GGGCTGG---CTACATTCTCAGCTGCTCATGAGGATGAAG--GGAGCACGTTGT i mm10.chr2 C 0 I 77 e canFam3.chr19 50611459 195 + 53741614 I e macFas5.chr12 37607386 0 + 132586672 C e calJac3.chr6 87847598 0 - 158406734 C e chlSab2.chr10 34360410 0 + 128595539 C e papAnu2.chr12 11264333 0 + 104110932 C e rheMac3.chr12 11903127 0 + 106825570 C a score=49765.000000 s hg38.chr2_GL582966v2_alt 14205 109 + 96131 gaacccgggaggcggagcttgcagtgagccgagatcgtgccactgcactccagcctgggtgacagagggagactctgtctc------------------aaaaaaaaaaaaaaaaaTTTACTAGTAC s panTro4.chr2B 153135605 127 + 247518478 gaacccgggaggcggagcttgcagtgagccaagatcgtgccactgcactccagcctgggtggcagagggagactctgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaTTACTAGTAT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38338643 102 + 135000294 gaacccgggaggcagagcttgcagtgagccgagatcatgccactgcactccagcctgggcgacagagggagactctgtctc-------------------------aaaaaaaaaaTTTACTAGTAT i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82289719 103 - 85365473 gaacccgggaggtggagcttgcagtgagccgagatcgcgccactgcactccagcctgggcgacagagcgagactctgtctc------------------------aaaaaaaaaaaTTCACTAGTAT i nomLeu3.chr20 C 0 C 0 e canFam3.chr19 50611459 195 + 53741614 I e macFas5.chr12 37607386 0 + 132586672 C e calJac3.chr6 87847598 0 - 158406734 C e mm10.chr2 49699070 77 + 182113224 I e chlSab2.chr10 34360410 0 + 128595539 C e papAnu2.chr12 11264333 0 + 104110932 C e rheMac3.chr12 11903127 0 + 106825570 C a score=170951.000000 s hg38.chr2_GL582966v2_alt 14314 57 + 96131 GGGCTTGTAACTTTAGTTAAACAGACGTACAACAG-ATGGAAATAATGGAGGATTATT s panTro4.chr2B 153135732 57 + 247518478 GGGCTTGTAACTTTAGTTAAACAGACGCACAACAG-ATGGAAATAATGGAGCATTGTT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38338745 58 + 135000294 AGGCTTGTAACTTTAGTTAAACAGACATGCAACAGAATGGAAATAATGGAGCACTGTT i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82289822 58 - 85365473 GGGCTTGTAACTTTAGTTAAACAGACGTGCAACAGAATGGAAATAAGGGAGCACTGTT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11903127 58 + 106825570 GGGCTTGTAACTTTAGTTAAACAGATGTGCAACAGAATGGAAATAATGGAGCATTGTT i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37607386 58 + 132586672 GGGCTTGTAACTTTAGTTAAACAGATGTGCAACAGAATGGAAATAATGGAGCATCGTT i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11264333 58 + 104110932 GGGCTTGTAACTTTAGTTAAACAGATGTGCAACAGAATGGAAATAATGGAGCATTGTT i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34360410 58 + 128595539 GGGCTTGTAACTTTAGTTAAACAGATGCGCAACAGAATGGAAATAATGGAGCATTGTT i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87847598 58 - 158406734 GGACTTGTAACTTTAGTTAAACAGACACACAACAGAATGGAAATAATGGAGCACTGTT i calJac3.chr6 C 0 C 0 e canFam3.chr19 50611459 195 + 53741614 I e mm10.chr2 49699070 77 + 182113224 I a score=-54.000000 s hg38.chr2_GL582966v2_alt 14371 2 + 96131 G-T s panTro4.chr2B 153135789 2 + 247518478 G-T i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38338803 3 + 135000294 GTT i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82289880 3 - 85365473 GTT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11903185 3 + 106825570 GTT i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37607444 3 + 132586672 TTT i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11264391 3 + 104110932 GTT i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34360468 3 + 128595539 GTT i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87847656 3 - 158406734 GTT i calJac3.chr6 C 0 C 0 s mm10.chr2 49699147 2 + 182113224 -GT i mm10.chr2 I 77 C 0 e canFam3.chr19 50611459 195 + 53741614 I a score=7920106.000000 s hg38.chr2_GL582966v2_alt 14373 2068 + 96131 TATTTAGAGCCTAAATACACCTGAAAACTGCTTAATACTGACAGACTGGAGTGGAGGCCTGCC-TCTGCACAGTGTCAGTGGTTATTGCTAATGATATTTATGAGGT-G-TTTGAAATCAT-GTCCTTCACGTAGTTTCTTTTGCTCACACACACCTGTTTTCCTTTGCCCTAGATGTGTCCATATGACTGTGTCAGTGTGATCTTGTAGAAaagaactctgggctttagttcccgtctccc---------------ctgaatggtgttcttcccttaggctggcagtttgacatttctggggctcagtttcctgtctgtcgaaggagggtgatagatagtacctgccttgtatatttcatggagttaagatgctcaaataagaAAGCATCTTAAAATAACAGTGCTTAAAATAACATAGACTGCTACTATTTGTGACCCATCAGCTACATGATTTCTCTATGTGTAAGCAGGGGTAC---------CACACAAACAAGTCCAAGGGAGTTGAGAATCTATTCTA-TTTGGAAAGAAACCTCCCCCTGGACATGAATTCATTTCTGTCATCAGGAGTT--------TCTCCTTTATATGTG-----ATTCGAAT------TTGCGTAGTTGAACATTGCTTCCCCACTTCC---------------------TT-TCTTGAGAGAGCAGCTGCTCCCCCTGCATCGTTTGTCCAGTCAGCAGAGACATGAATCATGTTGAGTTCCCTTTTTT-CT-------------------AGCATCTGTAAACTGCCCTCTACCTAGAATAAATGCTGTCAAGATGAAATTACCAGCAATAACGCAGCAAAGGAGAAACTATGCATGGTCCCTCTGGCTGCAGAGG-AAAAAAGACAAATTTACGATGCAGTATACAT----TTGACTTTTCATTTCTCTCCCAAGTTTTTTGCTTTTTGGATA-----TTTTTCATTT-------------------TTTCCTTGCTATGAG-AATAAGT-AGGGAAGGAACGGACTCTAGATAACCAACCCTACCGCCTCTAGTCATCTGCCTGAACTTGGAGCCCGTAACTTACATTTTTC-CAATATGCCCATTCATTGTGGCTCAGGACAATATTTTCTCTTCATGCTTCCCTCTGGGCTCCCTTCGGCATGGGGACTGCGGCTCAGTCTCCCAGGGCCC-GAGCTACCCATGGTGACAGCACTTCT------------------------GGAGCCTGGTTTCCCTGGATGGA----TGGCCCCTGGGGAAGCATCTGCAGCTCCACCATTTGAGGTATTTCAGCTATTCCACTAAAACCCAATTGAGAGGAAAATGATGGCAGGAGAGACCAAATCCCCAGCCTCATACACGAAGGATGGTTTTTTATCACTGTGGGTCTTCTC-------------------------TACTTTTATTTTTCCT----TGCTTTCCAGGA---------GG----CTGTCCCCCTTT------------------GCCCTCGTGTGAATTTGAAATTTCTACTTTGTGCTTCTGCCGTCCTGTGCTGCTCACTGCTTTCTTTTCTCTCTGGTAGGTCAGCAAAACTGGTGCCGAGGGAGCTGTTCTTGACGAAGCTAAAAATATCAATAAGTCTTTGTCTGCTCTTGGAAATGTGATCTCTGCTTTGGCAGAAGGGACAGTAAGTGATCCTGCCCCCATC-TATTAAGTAATATTATGAGAAACCACCTTTTGGGGCCTCATAGTCCC----------TTTGCCACACACCCCAAAGGCTGGTTTGTTTTTCTGTTTGGAAGAGGACAGAGGGAATCCTGGCTATGGATG-CCTGCTTGCTGGGAGTTCCCATCTACTAAAAA-GTATGAATGGTGATGCTAATTTCCTATGACATAGGTCAAAGAATGGGCATTCTAAACTTTGGCAAGATCCAAAGACCCAGCCACAAATTCTTGTTTTACTCGGTTTCTAAGCTCAGTGTCTTCATCCCTGACTTGCTTGCCTCTGT-GTTTT--------TCTCAGAATG------GGCTGTCAAAACCAATACTTTTTCT-------TTTCCTAAATAGAAAACACATGTGCCATACCGGGACAGCAAGATGACTCGGATTCTTCAGGACTCTTTGGGTGGGAACTGCAGAACCACCATCGTCATTTGCTGTTCTCCTTCTGTCTTCAATGAGGCTGAGACCAAGTCCACACTGATGTTCGGACAGAGGTACGTGTGGTC---TCTCAGGACCCATCCTCTGTGCTAGGTCTTGGGTCTT s panTro4.chr2B 153135791 2067 + 247518478 TATTTAGAGCCTAAATACACCTGAAAACTGCTTAATACTGACAGACTGGAGTGGAGGCCTGCC-TCTGCACAGTGTCAGTGGTTATTGCTAATGATATTTATGAGGT-G-TTTGAAATCAT-GTCCTTCACGTAGTTTCTTTTGCTCACACACACCTGTTTTCCTTTGCCCTAGATGTGTCCATATGACTGTGTCAGTGTGATCTTGTAGAAaagaactctgggctttagttcccgtctccc---------------ctgaatggtgttcttcccttaggctggcagtttgacatttctggggctcagtttcctgtctgtcgaaggagggtgatagatggtaactgccttgtatatttcatggagttaagatgctcaaataagaAAGCATCTTAAAATAACAGTGCTTAAAATAACATAGACTGCTACTATTTGTGACCCATCAGCTACGTGATTTCTCTATGTGTAAGCAGGGGTAC---------CACACAAACAATTCCAAGGGAGTTGAGAATCTGTTCTA-TTTGGAAAGAAACCTCCCCCTGGACATGAATTCATTTCTGTCATCAGGAGTT--------TCTCCTTTATATGTG-----ATTCGAAT------TTGCGTAGTTGAACATTGCTTCCCCACTTCC---------------------TT-TCTTGAGAGAGCAGCTGCTCCCCCTGCATCGTTTGTCCAGTCAGCAGAGACATGAATCATGTTGAGTTCCCTTTTTT-CT-------------------AGCATCTGTAAACTGCCCTCTACCTAGAACAAATGCTGTCAAGATGAAATTACCAGCAATAACACAGCAAAGGAGAAACTATGCATGGTCCCTCTGGCTGCAGAGG-AAAAAAGACAAATTTACGATGCAGTATACAT----TTGACTTTTCATTTCTCTCCCAAGTTTTTTGCTTTTTGGATA-----TTTTTCATTT-------------------TTTCCTTGCTATGAG-AATAAGT-AGGGAAGGAACGGACTCTGGATAACCAACCCTACCGCCTCTAGTCATCTGCCTGAACTTGGAGCTCGTAACTTACATTTTTC-CAATATGCCCATTCACTGTGGCTCAGGACAATATTTTCTCTTCATGCTTCCCTCTGGGCTCCCTTCGGCATGGGGACTGCGGCTCAGTCTCCCAGGGCCC-GAGCTACCCATGGTGACAGCACTTCT------------------------GGAGCCTGGTTTCCCTGGATGGA----TGGCCCCTGGGGAAGCATCTGCAGCTCCACCATTTGAGGTATTTCAGCTATTCCACTAAAACCCAATTGAGAGGAAAATGATGGCAGGAGAGACCAAATCCCCAGCCTCATACACGAAGGATGG-TTTTTATCACTGTGGGTCTTCTC-------------------------TACTTTTATTTTTCCT----TGCTTTCCAGGA---------GG----CTGTCCCCCTTT------------------GCCCTCATGTGAATTTGAAATTTCTACTTTGTGCTTCTGCTGTCCTGTGCTGCTCACTGCTTTCTTTTCTCTCTGGTAGGTCAGCAAAACTGGTGCCGAGGGAGCTGTTCTTGACGAAGCTAAAAATATCAATAAGTCTTTGTCTGCTCTTGGAAATGTGATCTCTGCTTTGGCAGAAGGGACAGTAAGTGATCCTGCACCCATC-TATTAAGTAATATTATGAGAAACCACCTTTTGGGGCCTCATAGTCCC----------TTTGCCACACACCCCAAAGGCTGGTTTGTTTTTCTGTTTGGAAGAGGACAGAGGGAATCCTGGCTATGGATG-CCTGCTTGCTGGGAGTTCCCATCTACTAAAAA-GTATGAATGGTGATGCTAATTTCCTATGACATAGGTCAAAGAATGGGCATTCTAAACTTTGGCAAGATCCAAAGACCCAGCCACAAATTCTTGTTTTACTCGGTTTCTAAGCTCAGTATCTTCATCCCTGACTTGCTTGCCTCTGT-GTTTT--------TCTCAGAATG------GGCTGTCAAAACCAATACTTTTTCT-------TTTCCTAAATAGAAAACACATGTGCCATACCGGGACAGCAAGATGACTCGGATTCTTCAGGACTCTTTGGGTGGGAACTGCAGAACCACCATCGTCATTTGCTGTTCTCCTTCTGTCTTCAATGAGGCTGAGACCAAGTCCACACTGATGTTCGGACAGAGGTACGTGTGGTC---TCTCAGGACCCATCCTCTGTGCTAGGTCTTGGGTCTT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38338806 2083 + 135000294 TATTTAGAGCCTAAATACACCTGAAAACTGCTTAATACTGGCAGACTGAAGTGGAGGCCTGCC-TCTGCGCAGTGTCAGTGGTTATTGCTAATGATATTTATGAGGT-G-TTTAAAATCAT-GTCCTTCACATAGTTTCTTTTGCTCACACACACCTGTTTTCCTTTGCCCTAGATGTGTCCATATGACTGTGTCAGTGTGATCTTGTAGAAGAGAACTCTGGGCTTTAGTTCCCGTCTCCCATGAATGGCGTTCTTCCGAATGGCGTTCTTCccttaggctggcagtttgacatttctggggctcagtttcctgtctgtcaaaggagggtgatagatggtacctgccttgtatatttcgtggagttaagatgctcaaataagaAAGCATCTTAAAATAACTGTGCTTAAAATAACATAGACTGCTACTATTTGTGACCCATCAGCTACATGATTTCTCTATGTGTAAGCAGGGGTGC---------CACACAAACAATTCCAAGGGAGTTGAGAATCTATTCTA-TTTGGAAAGAAACCTCCCCCTGGACATGAATTCATTTCTGTCATCAGGAGTT--------TCTCCTTTATATGTG-----ATTCGAAT------TTGCGTAGTTGAACATTGCTTCCCCACTTCC---------------------TT-TCTTGAGAGAGCAGCTGCTCCCCCTGCATCATTTGTCCAGTCAGCAGAGACATGAATCATGTTGAGTTCCCTTTTTTCCT-------------------AGCATCTGTAAACTGCCCTCTACCTAGAACAAATGCTGTTAAGACGAAATTACCAGCAATAACACAGCAAAGGAGAAACTATGCATGGTCCCTCTGGCTGCAGAAG-AAAAAAGACAAATTTACAATGCAGTATACAT----TTGACTTTTCATTTCTCTCCCAAGTTTTTTGCTTTTTGGACA-----TTTTTCATTT-------------------TTTCCTTGCTATGAG-AACAAGT-AGGGAAGGAATGGACTCTGGATAACCAACCCTACCACCTCTAGTCATCTGCCTGAACTTGGAGCTCGTAACTTACATTTTTC-CAATATGCCCATTCATTGTGGCTCAGGACAATATTTTCTCTTCATGCTTCCCTCTGGGCTCCCTTCGGCATGGGGACTGCGGCTCAGTCTCCCAGGGCCC-GAGCTACCCATGGTGACAGCACTTCT------------------------GCAGCCTGGTTTCCCTGGATGGA----TGGCCCCTGGGGAAGCATCTGCAGCTCCACCACTTGAGGTATTTCAGCTATTCCACTAAAACCCAATTGAGAGGAAAATTATGGCAGGAGAGACCAAATCCCCAGCCTCATACATGAAGGATGG-TTTTTATCACTGTGGGTCTTCTC-------------------------TACTTTTATTTTTCCT----TGCTTTCCAGGA---------GG----CTGTCCCCCTTT------------------GCCCTGGTGTGAATTTGAAATTTCTACTTTGTGCTTCTGCTGTCCTGTGCTGCTCACTGCTTTCTTTTCTCTCTGGTAGGTCAGCAAAACTGGTGCCGAGGGAGCTGTTCTCGACGAAGCTAAAAATATCAATAAGTCTTTGTCTGCTCTTGGAAATGTGATCTCTGCTTTGGCAGAAGGGACAGTAAGTGATCCTGCCCCCGTC-TATTAAATAATATTATGAGAAACCACCTTTTGGGTCCTCATAGTCCC----------TTTGCCACACACCCCAAAGGCTGGTTTGTTTTTCTGTTTGGAAAAGGACAGAGGGAATCCTGGCTGTGGATG-CCTGCTTGCTGGGAGTTCCCATCTACTAAAAA-GTATGAATGGTGATGCTAATTTCCTATGACGTAGGTCAAAGAATAGGCATTCTAAACTTTGGCAAGATCCAAAGACCCAGCCACAAATTCTTGTTTTACTCGGTTTCTAAGCTCAGTGTCTTCATCCCTGACTTGCTTGCCTCTGT-GTTTT--------TCTAAGGATG------GGCTGTCAAAACCAATACTTTTTAT-------TTTCCTAAATAGAAAACACATGTGCCATACCGGGACAGCAAGATGACTCGGATTCTTCAGGACTCTTTGGGTGGGAACTGCAGAACCACTATCGTTATTTGCTGTTCTCCTTCTGTCTTCAATGAGGCTGAGACCAAGTCCACACTGATGTTCGGACAGAGGTACGTGTGATC---TCTCAGGACCCATCCTCTGTGCTAGGTCTTGGGTCTT i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82289883 2056 - 85365473 TATTTAGAGCCTAAATACACCTGAAAACTGCTTAATACTGGCAGACCGGAGTGGAGGCCTGCC-TCTGCGCAGTGTCAGTGGTTATTGCTGATGATATTTATGAGGT-G-TTTGAAATCAT-GGCCTTCACATAGTTTCTTTTGCTCACACACAC--GTTTTCCTTTGCCCTAGATGTGTCCATATGACTGTGTCAGTGGGATCTTGTag--gagaactctgggctttagttcccgtctcct---------------ctgaatggcgttcttcccttaggctggcagtttgacatttctggggctcagtttcctgtctgtcaaaggagggtgatagatggtacctgccttgtatatttcatggagttaagatgctcaaataagaAAGCATCTTAAAATAACAGTGCTTAAAATAACGTAGACTGCTACTATTTGTGACCTATCAGCTACATGATTTCTCTATGTGTAAGCA-GGGTGC---------CACACAAACAGTTCCAAGGGAGTTGAGAATCTATTCTA-TTTGGAAAGAAACCTCCCCCTGGACATGAATTCATTTCTGTCAGCAGGAGTT--------TCTCCTTTATATGTG-----ATTCGAAT------TTGCGTAGTTGAACATTGCTTCCCCATTTCC---------------------TT-TCTTGAGAGAGCAGCTGCTCCCCCTGCATCGTTTGTCCAGTCAGCAGAGAAATGAATCATGTTGAGTTCCCTTTTTTTCT-------------------AGCATCTGTAAACTGCCCTCTACCTAGAACAAATGCTGTCAAGATGAAATTACCAGCAATAACACAGCAAAGGAGAAACTATGCATGGTCCCTCTGGCTGCAGAGG-AAAAAAGACAAATTTACAATGCAGTATACGT----TTGACTTTTCATTTCTCTCCCAAGTTTTTTGCTTTTTGGATA-----TTTTTCATTT-------------------TTTCCTTGCTATGAG-AATAAGT-AGGGAAGGAATGGACTCTGGATAACCAACCCTACCACCTCTAGTCATCTGCCTGAACCTGGAGCTCGTAACTTACATTTTTC-TAATATGCCCATTCATTGTGGCTCAGGACAATATTTTCTCTTCATGCTTCCTTCTGGGCTCCCTTCGGCATGGGGACTGCGGCTCAGTCTCCCAGGGCCC-GAGCTACCCATGGTGACAGCACTTCT------------------------GGAGCCTGGTTTCCCTGGATGGA----TGGCCCCTGGGGAAGCATCTGCGGCTCCACCACTTGAGGTATTTCAGCTATTCCACTAAAACCCAATTGAGAGGAAAATGATGGCAGGAGAGACCAAATCCCCAGCCTCATACACGAAGGATGG-TTTTTATCACTGTGGGTCTTCTC-------------------------TACTTTTATTTTTCCT----TGCTTTCCAGGA---------GG----CTGTCCCCCGTT------------------GCCCTTGTGTGAATTTGAAAtttctactttgtgcttctgctgtcctgtgctgctcactgctttctTTTCTCTCTGGTAGGTCAGCAAAACTGGTGCCGAGGGAGCTGTTCTCGATGAAGCTAAAAATATCAATAAGTCTTTGTCTGCTCTTGGAAATGTGATCTCTGCTTTGGCAGAAGGGACAGTAAGTGATCCTGCCCCCGTC-TATTAAATAATATTATGAGAAACCACCTTTTGGGTCCTCATAGTCCC----------TTTGCCACACACCCCAAAGGCTGGTTTGTTTTTCTGTTTGGAAAAGGACAGAGGGAATCCTGGCTGTGGATG-CCTGCTCGCTGGGAGTTCCCATCTACTAAAAA-GTATGAATGGTGATGCTAATTTCTTATGACATAGGTCAAAGAATGGACATTCTAAACTTTGGCAAGATCCAAAGACCCAGCCACAAATTCTTGTTTTACTCGGTTTCTAAGCTCAGTGTCTTCATCCCTGACTTGCTTGCCTCTGT-GTTTT--------TCTCAGAATG------GGCTGTCAAAACCAGTACTTTTTCT-------TTTCCTAAATAGAAAACACATGTGCCATACCGGGACAGCAAGATGACTCGGATTCTTCAGGACTCTTTGGGTGGGAACTGCAGAACCACCATCGTCATTTGCTGTTCTCCTTCTGTCTTCAATGAAGCTGAGACCAAGTCCACACTGATGTTCGGACAGAGGTACGTGTGGTC---TCTCAGGACCCATTCTCT-------GTCTTGGGTCTT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11903188 2069 + 106825570 TATTTAGAGCCTAAATACACCTGAAAACTGCTTAATACTGGCAGACTGGAGTGGAGGCTTGCC-TCTGCACAGTGTCAGTGGTTATTGCTAATGATATTTATGAGGT-G-TTTGAAATCAT-GTCCTTCACATAGTTTCTTTTGCTCACACACACCTGTTTTCCTTTGCCCTAGATGTGTCCATATGACTGTGTCAGTGTGATCTTGTAGaagagaactctgggctttagttcccatctctc---------------ctgaatggcgttcttcccttaggttggcagtctgatatttctggggctcagtttcctgtctgtcaaaggagggtgatagatgatacctgccttgtatatttcatggagttaagatgctcaaataagaAAGCATCTTAAAATAACACTGCTTAAAATAACATAGACTGTTACTGTTTGTGACCCGTCAGCTACATGATTTCTCTATGTGTAAGTAGGGGAGC---------CACACAAACAATTCCAAGGGAGTTGAGAATCTATTCTATTTTTGAAATAAACCTCCCCCTGGACATGAATTCATTTCTGTCATCAGGAGTT--------TCTCCTTTATATGAG-----ATTGGAAT------TTGCGTAGTTGAACATTGCTTCCTTGCTTCC---------------------TT-TCTTGAGAGAGCAGCTGCTGCCCCTGCATCATTTGTCCAGTCAGCAGAGACATGAATCATGTTGAGTTCCCTTTTTTTCT-------------------AGCATCTGTAGACTGCCCTCTACCTAGAGCAAATGCTGTCAAGATGAAATTACCAGCAATAACACAGCAAAGGAGAAAC--TGCGTGGTCCCCCTGGCTGCAGAGGAAAAAAAGACAAATTTACAATGCAATATACAT----TTGACTTTTCATTTCTCTCCCAAGTTTTTTGCTTTTTGGATA-----TTTTTCATTT-------------------TTTCCTTGTTGTGAG-AATAAGT-AGGGAAGGAACAGAGTCTGGATAACTAACCCTACCACATCTAGTCATCTGCCTGAACTTGGAGCTTGTAACTTACATTTTTC-CAATATGCCCATTCATTGTGGCTCAGGACAACATTTTCTCTTCATGCTTCCCTCTGGGCTCCCTTCGGCATGGGGACTGCGGCTCAGTCTCCCAGGGCCC-GAGCTACCCATGGTGACAGCACTTCT------------------------GGAGCCTGGTTTCCCTGGATGGATGGTTGGCCCCTGGGGAAGCATCTGCAGCTCCACCACTTGAGGTATTTCAGCTATTCCACTAAAACCCAATTGAGAGGAAAATGATGGCAGGAGAGACCAAATCCCCAGCCTCATACGCGAAGGATGG-TTTTTATCACTGTGGGTCTTCTC-------------------------TACTTTTATTTTTCCT----TGCTTTCCAGGA---------GG----CTGTCCCCCTTT------------------GCCCTTGTGTGAATTTGAAATTTCTACTTTGTGCTTCCGCTGTCCTGTGCTGCTCACTGCTTTCTTTTCTCTCTGGTAGGTCAGCAAAACTGGTGCCGAGGGAGCTGTTCTCGATGAAGCTAAAAATATCAATAAGTCTTTGTCTGCTCTTGGAAATGTGATCTCTGCTTTGGCAGAAGGGACAGTAAGTGATCCTGCCCCCGTC-TATTAAATAATATTATGAGAAACCACCTTTTGGGTCCTCGTAGTCCC----------TTTGCCACACA--CCAGAGACTGGTTTGTTTTTCTGTTTGGAAAAGGACAGAGGGAATCCTGGCTGTGGATG-CCTGCTCCCTGGGAGTTCCCATCTACTGAAAA-GTATGAATGATGATGCTAATTTCCTATGACATAGGTCAAAGAATGGGCATTTTAAACTTGGGCAAGATCCAAAGACCCGGCCACAAATTCTTGTTTTACTCAATTTCTAAGCTCAGTGTCTTCATCCCTGACTTGCTTGCCTCTG--GTTTT--------TCTCAGAATG------GGCTGTCAAAACCAATACTTATTCT-------TTTCCTTAATAGAAAACACATGTGCCATACCGGGACAGCAAGATGACTCGGATTCTTCAGGACTCTTTGGGTGGGAACTGCAGAACCACCATCGTCATTTGCTGTTCTCCTTCTGTCTTCAATGAGGCTGAGACCAAGTCCACACTGATGTTTGGACAGAGGTATGTGTGGTC---TCTCAGGACCCATCCTCTGAGCTAGGTCTTGGGTCTT i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37607447 2065 + 132586672 TATTTAGAGCCTAAATACACCTGAAAACTGCTTAATACTGGCAGACTGGAGTGGAGGCTTGCC-TCTGCACAGTGTCAGTGGTTATTGCTAATGATATTTATGAGGT-G-TTTGAAATCAT-GTCCTTCACATAGTTTCTTTTGCTCACACACACCTGTTTTCCTTTGCCCTAGATGTGTCCATATGACTGTGTCAGTGtgatcttgtagaagagaactctgggctttagttcccatctctc---------------ctgaatggcgttcttcccttaggttggcagtctgatatttctggggctcagtttcctgtctgtcaaaggagggtgatagatgatacctgccttgtatatttcatggagttaagatgctcaaataagaAAGCATCTTAAAATAACACTGCTTAAAATAACATAGACTGTTACTGTTTGTGACCCGTCAGCTACATGATTTCTCTATGTGTAAGTAGGGGAGC---------CACACAAACAATTCCAAGGGAGTTGAGAATCTATTCTATTTTTGAAATAAACCTCCCCCTGGACATGAATTCATTTCTGTCATCAGGAGTT--------TCTCCTTTATATGAG-----ATTGGAAT------TTGCGTAGTTGAACATTGCTTCCTTGCTTCC---------------------TT-TCTTGAGAGAGCAGCTGCTGCCCCTGCATCATTTGTCCAGTCAGCAGAGACATGAATCATGTTGAGTTCCCTTTTTTTCT-------------------AGCATCTGTAGACTGCCCTCTACCTAGAGCAAATGCTGTCAAGATGAAATTACCAGCAATAACACAGCAAAGGAGAAAC--TGCGTGGTCCCCCTGGCTGCAGAGGAAAAAAAGACAAATTTACAATGCAATATACAT----TTGACTTTTCATTTCTCTCCCAAGTTTTTTGCTTTTTGGATA-----TTTTTCATTT-------------------TTTCCTTGTTGTGAG-AATAAGT-AGGGAAGGAACAGAGTCTGGATAACCAACCCTACCACATCTAGTCATCTGCCTGAACTTGGAGCTTGTAACTTACATTTTTC-CAATATGCCCATTCATTGTGGCTTAGGACAACATTTTCTCTTCATGCTTCCCTCTGGGCTCCCTTCGGCATGGGGACTGCGGCTCAGTCTCCCAGGGCCC-GAGCTACCCATGGTGACAGCACTTCT------------------------GGAGCCTGGTTTCCCTGGATGGA----TGGCCCCTGGGGAAGCATCTGCAGCTCCACCACTTGAGGTATTTCAGCTATTCCACTAAAACCCAATTGAGAGGAAAATGATGGCAGGAGAGACCAAATCCCCAGCCTCATACGCGAAGGATGG-TTTTTATCACTGTGGGTCTTCTC-------------------------TACTTTTATTTTTCCT----TGCTTTCCAGGA---------GG----CTGTCCCCCTTT------------------GCCCTTGTGTGAATTTGAAATTTCTACTTTGTGCTTCCGCTGTCCTGTGCTGCTCACTGCTTTCTTTTCTCTCTGGTAGGTCAGCAAAACTGGTGCCGAGGGAGCTGTTCTCGATGAAGCTAAAAATATCAATAAGTCTTTGTCTGCTCTTGGAAATGTGATCTCTGCTTTGGCAGAAGGGACAGTAAGTGATCCTGCCCCCGTC-TATTAAATAATATTATGAGAAACCACCTTTTGGGTCCTTGTAGTCCC----------TTTGCCACACA--CCAGAGACTGGTTTGTTTTTCTGTTTGGAAAAGGACAGAGGGAATCCTGCCTGTGGATG-CCTGCTCCCTGGGAGTTCCCATCTACTGAAAA-GTATGAATGATGATGCTAATTTCCTATGACATAGGTCAAATAATGGGCATTTTAAACTTGGGCAAGATCCAAAGACCCGGCCACAAATTCTTGTTTTACTCGATTTCTAAGCTCAGTGTCTTCATCCCTGACTTGCTTGCCTCTG--GTTTT--------TCTCAGAATG------GGCTGTCAAAACCAATACTTATTCT-------TTTCCTAAATAGAAAACACATGTGCCATACCGGGACAGCAAGATGACTCGGATTCTTCAGGACTCTTTGGGTGGGAACTGCAGAACCACCATCGTCATTTGCTGTTCTCCTTCTGTCTTCAATGAGGCTGAGACCAAGTCCACACTGATGTTTGGACAGAGGTACGTGTGGTC---TCTCAGGACCCATCCTCTGAGCTAGGTCTTGGGTCTT i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11264394 2065 + 104110932 TATTTAGAGCCTAAATACACCTGAAAACTGCTTAATACTGGCAGACTGGAGTGGAGGCTTGCC-TCTGCACAGTGTCAGTGGTTATTGCTAATGATATTTATGAGGT-G-TTTGAAATCAT-GTCCTTcacatagtttcttttgctcacaCACACCTGTTTTCCTTTGCCCTAGATGTGTCCATATGACTGTGTCAGTGTGATCTTGTAGAAGAGAACTCTGGGCTTTAGTTCCCATCTCTC---------------CTGAATGGCGTTCTTCCCTTAGGTTGGCAGTCTGATATTTCTGGGGCTCAGTTTCCTGTCTGTCAAAGGAGGGTGATAGATGATACCTGCCTTGTATATTTCATGGAATTAAGATGCTCAAATAAGAAAGCATCTTAAAATAACACTGCTTAAAATAACATAGACTGTTACTGTTTGTGACCCGTCAGCTACATGATTTCTCTATGTGTAAGCAGGGGAGC---------CACACAAACAATTCCAAGGGAGTTGAGAATCTattctatttttgaaataaacCTCCCCCTGGACATGAATTCATTTCTGTCATCAGGAGTT--------TCTCCTTTATATGAG-----ATTGGAAT------TTGCGTAGTTGAACAttgcttccttgcttcc---------------------tt-tcttgAGAGAGCAGCTGCTGCCCCTGCATCATTTGTCCAGTCAGCAGAGACATGAATCATGTTGAGTTCCCtttttttCT-------------------AGCATCTGTAAACTGCCCTCTACCTAGAGCAAATGCTGTCAAGATGAAATTACCAGCAATAACACAGCAAAGGAGAAAC--TGCGTGGTCCCCCTGGctgcagaggaaaaaaagacaaatttacaATGCAATATACat----ttgacttttcatttctctcccaagttttttgctttttggata-----tttttcattt-------------------tttccttgttGTGAG-AATAAGT-AGGGAAGGAACAGAGTCTGGATAACCAACCCTACCACATCTAGTCATCTGCCTGAACTTGGAGCTTGTAACTTACATTTTTC-CAATATGCCCATTCATTGTGGCTCAGGACAACATTTTCTCTTCATGCTTCCCTCTGGGCTCCCTTCGGCATGGGGACTGCGGCTCAGTCTCCCAGGGCCC-GAGCTACCCATGGTGACAGCACTTCT------------------------GGAGCCTGGTTTCCCTGGATGGA----TGGCCCCTGGGGAAGCATCTGCAGCTCCACCACTTGAGGTATTTCAGCTATTCCACTAAAACCCAATTGAGAGGAAAATGATGGCAGGAGAGACCAAATCCCCAGCCTCATACGCGAAGGATGG-TTTTTATCACTGTGGGTcttctc-------------------------tacttttatttttcct----tgctttcCAGGA---------GG----CTGTCCCCCTTT------------------GCCCTTGTGTGAATTTGAAATTTCTACTTTGTGCTTCCGCCGTCCTGTGCTGCtcactgctttcttttctctctggtaGGTCAGCAAAACTGGTGCCGAGGGAGCTGTTCTTGATGAAGCTAAAAATATCAATAAGTCTTTGTCTGCTCTTGGAAATGTGATCTCTGCTTTGGCAGAAGGGACAGTAAGTGATCCTGCCCCCGtc-tattaaataatattatgagAAACCACCTTTTGGGTCCTCGTAGTCCC----------TTTGCCACACA--CCGGAGActggtttgtttttctgtttggaaAAGGACAGAGGGAATCCTGGCTGTGGATG-CCTGCTCCCTGGGAGTTCCCATCTACTGAAAA-GTATGAATGATGATGCTAATTTCCTATGACATAGGTCAAAGAATGGGCATTTTAAACTTGGGCAAGATCCAAAGACCCGGCCACAAATTCTTGTTTTACTCGATTTCTAAGCTCAGTGTCTTCATCCCTGACTTGCTTGCCTCTG--GTTTT--------TCTCAGAATG------GGCTGTCAAAACCAATACTTATTCT-------TTTCCTAAATAGAAAACACATGTGCCATACCGGGACAGCAAGATGACTCGGATTCTTCAGGACTCTTTGGGTGGGAACTGCAGAACCACCATCGTCATTTGCTGTTCTCCTTCTGTCTTCAATGAGGCTGAGACCAAGTCCACACTGATGTTTGGACAGAGGTACGTGTGGTC---TCTCAGGACCCATCCTCTGAGCTAGGTCTTGGGTCTT i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34360471 2065 + 128595539 TATTTAGAGTCTAAATACACCTGAAAACTGCTTAATACTGGCAGACTGGAGTGGAGGCTTGCC-TCTGCACAGTGTCAGTGGTTATTGCTAATGATATTTATGAGGT-G-TTTGAAATCAT-GTCCTTCACATAGTTTCTTTTGCTCATACACACCTGTTTTCCTTTGCCCTAGATGTGTCCATATGACTGTGTCAGTGTGATCTTGTAGaagagaactctgggctttagttcccatctctc---------------ctgaatggcgttcttcccttaggttggcagtctgatatttctggggctcagtttcctgtctgtcaaaggagggtgatagatgatacctgccttgaatatttcatggagttaagatgctcaaataagaAAGCATCTTAAAATAACACTGCTTAAAATAACATAGACTGTTACTGTTTGTGACCCGTCAGCTACATGATTTCTCTATGTGTAAGTAGGGGAGC---------CACACAAACAGTTCCAAGGGAGTTGAGAATCTGTTCTATTTTTGAAATAAACCTCCCCCTGGACATGAATTCATTTCTGTCATCAGGAGTT--------TCTCCTTTATATGAG-----ATTGGAAT------TTGCGTAGTTGAACATTGCTTCCTCGCTTCC---------------------TT-TCTTGAGAGAGCAGCTGCTCCCCCTGCATCATTTGTCCAGTCAGCAGAGACATGAATCATGTTGAGTTCCCTTTTTTTCT-------------------AGCATCTGTAAACTGCCCTCTACCTAGAGCAAATGCTGTCAAGATGAAATTACCAGCAATAACACAGCAAAGGAGAAAC--TGCGTGGTCCCCCTGGCTGCAGAGGAAAAAAAGATAAATTTACAATGCAATACACAT----TTGACTTTTCATTTCTCTCCCAAGTTTTCTGCTTTTTGGATA-----TTTTTCATTT-------------------TTTCCTTGTTGTGAG-AATAAGT-AGGGAAGGAACAGAGTCTGGATAACCAACCCTACCACATCTAGTCATCTGCCTGAACTTGGAGCTTGTAACTTACATTTTTC-CAATATGCCCATTCATTGTGGCTCAGGACAACATTTTCTCTTCATGCTTCCCTCTGGGCTCCCTTCGGCATGGGGACTGCGGCTCAGTCTCCCAGGGCCC-GAGCTACCCATGGTGACAGCACTTCT------------------------GGAGCCTGGTTTCCCTGGATGGA----TGGCCCCTGGGGAAGCATCTGCAGCTCCACCACTTGAGGTATTTCAGCTATTCCACTAAAACCCAATTGAGAGGAAAATGATGGCAGGAGAGACCAAATCCCCAGCCTCATACGTGAAGGATGG-TTTTTATCACTGTGGGTCTTCTC-------------------------TACTTTTATTTTTCCT----TGCTTTCCAGGA---------GG----CTGTCCCCCTTT------------------GCCCTTGTGTAAATTTGAAATTTCTACTTTGTGCTTCCGCTGTCCTGTGCTGCTCACTGCTTTCTTTTCTCTCTGGTAGGTCAGCAAAACTGGTGCCGAGGGAGCTGTTCTCGATGAAGCTAAAAATATCAATAAGTCTTTGTCTGCTCTTGGAAATGTGATCTCTGCTTTGGCAGAAGGGACAGTAAGTGATCCTGCCCCCATC-TATTAAATAATATTATGAGAAACCACCTTTTGGGTCCTCGTAGTCCC----------TTTGCCACACA--CCAGAGACTGGTTTGTTTTTCTGTTTGGAAAAGGACAGAGGGAATCCTGGCTGTGGATG-CCTGCTCCCTGGGAGTTCCCATCTACTGAAAA-GTATGAATGATGATGCCAATTTCCTATGACATAGGTCAAAGAATGGGCATTTTAAACTTGGGCAAGATCCAAAGACCCGGCCACAAATTCTTGTTTTACTCGATTTCTAAGCTCAGTGTCTTCATCCCTGACTTGCTTGCCTCTG--GTTTT--------TCTCAGAATG------GGCTGTCAAAACCAATACTTATTCT-------TTTCCTAAATAGAAAACACATGTGCCATACCGGGACAGCAAGATGACTCGGATTCTTCAGGACTCTTTGGGTGGGAACTGCAGAACCACCATCGTCATTTGCTGTTCTCCTTCTGTCTTCAATGAGGCTGAGACCAAGTCCACACTGATGTTTGGACAGAGGTATGTGTGGTC---TCTCAGGACTCATCCTCTGAGCTAGGTCTTGGGTCTT i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87847659 2041 - 158406734 TATTTAGAGCCCAAATAAACCTGAACATTGCTTCATACTCGCACACCAGAGTGGAGGGCTGCC-TCTGCACAGTGTCAGTGGTTATTGCTAATGATATTTTTGGGGC-GTTTTAAAATCAT-GCCTTTCACATAGTTTCTTTTGCTCACATGCACCTGTTTTCCTTTGTCCTAGATGTGTCCCTATGAATGTGTCAGTGTGATcttgtagaagagaactctgggttttagttcccatctccc---------------ctgaatggcgttcttcccttaggctgtcagtttgatatttctggggctcagtttcctg-ctgtcaaaggagggtgatagatagtacctgccttgtctatttcatggagttAACATGCTCCAATGTGAAGGCACCTTAAAATAACACCATGTGAA------TAGACTGCTACTATTTGTGACCCAACAGCTACATGATTCCTC--TGTGTAAGCTGAGGTGC---------CACACAAACAATTCCAAGGGAGTTGAGAATCTATTCTA-TTTGGAAAGAAACCTCCTCCTGGACCTGAATTCATCTCTGTCGTCAGGAGTT--------TCTCCTTTATATGCG-----ATTGAAAT------TT--GTAGTTCAACGTTGCTTCCCCCCTTCC---------------------TT-TCTTGAGAGAGCAGCTGCTCCCTGTGCATCTTTTGTCCAGTCAGCAGAGATATGAATCATGTTGAGTTCCCCTTTTTTCT-------------------AGCATCTGTAAACTGCCCTCTTCCTAGAGCAAATGCTGTCAAGATGAAATTACCAGTGATAACACAGCAGAGGAGGAACTGTGTATGGTCCCTTTGGGTGCAGAGG-AAAAAAGATAAATTTACAATGCAATATACAT----TAGACTTTTCATGTCTATCCCAAGTTTTTTGTTTTTTGGATA-----TTTTTCATTT-------------------TTTCCTTGCTGTGGG-AATAAGT-AGGGAAGGAACAGAGTCTGGATAACCAAGTCTACCACCTCTAGTCATCTGCCTGGATTTGGAGCTTGTAACTTACATTTTTTGCAGTATGCCCATTCATTGTGGCTCAGGACAACATTTTCTCTTCATGCTTCCCTCCGGGCTCCCTGCGGCATGGGGACTGCGGCTCGGTCTCCCAGGGCCT-GAGCTACCCATGGTGACAGCACTTCT------------------------GGAGCCTGGTTTCCCTGGATGGA----TGTCCCCTGGGGAAGCATCTGCAGCTCCACCACCTGAGGTATTTCGGCTATTCCACTAAAACCTAATTGAGAGGAAAATGACAGCAGTAGAGACCAAATCCCCAGCCTCATATGAGAAGGATGGTTTTTTATCACTGTAGGTCTTCTC-------------------------TACTTCTATTTTTCCT----TGCTTTTCAGGA---------GG----CTGTCCCCCTTT------------------GCCCTTGTGTGAATTGGAAATTTCTACTTTGTGCTTCCGCTGTCCTGTGCTGCTCACTGCTTTCTTTTCTCTCTGGTAGGTCAGCAAAACTGGTGCCGAGGGAGCTGTTCTTGACGAAGCTAAAAATATCAATAAGTCTTTGTCTGCGCTTGGAAATGTGATCTCTGCTTTGGCAGAAGGGACAGTAAGTGATCCTGCCCCCATA-TATTAAATAATATTATGAGAAACCACCTTTTGGGTCCCTGTAGTCCC----------TTTGCCACACGCCCCAGAGGC-----TGTTTTACTCTTTGGAAAAGGACAGCGGGAATCCTGGCTGTGGATG-CCTGCTCGCTGGGAGTTCCCATCCGCTAAACA-GTATGAATGGTGATGCTAATTTCCTATGGTCTGGATCAAAGAATGGGCATTCTAAACTTTGGCAAGATCCAAAGACC--------------TGTTTTACTTGGTTTCTAAGCTCAGTGTCTTCATCCCTGACTTGCTTGCTTCTGT-GTTTT--------TCTTCGAATG------GGCTGTCAAAACCAATATGTTTTCT-------TTTCCTAAATAGAAAACACACGTGCCCTATCGGGACAGCAAGATGACTCGGATTCTCCAGGACTCTTTGGGTGGGAACTGCAGAACCACCATTGTCATTTGCTGCTCTCCTTCTGTTTTCAATGAGGCTGAGACCAAGTCCACACTGATGTTTGGACAGAGGTACGTGTGGTC---TCTTAAGACCTGTCCTCTGTGCTAGGTCTTAGGTCGT i calJac3.chr6 C 0 C 0 s mm10.chr2 49699149 2008 + 182113224 TGTTTAGGACTGAAGTACACCTGGTAGCTGCCTCCTGCTGGCA-------------------------------GTTGCTGCTTCTTGTTAAGGGTACTTATGAGGT-G-TTTCAAGT-----GTCTCTGCTTGGTT--TTTAATTCATGT---TTTTCTTCCTTTTCCCCTGGATGAGTCCATATGAGTGTACT------GTCCTG-AGACCAGAGCTCTGGGATTTCCATCCCATCACCC---------------CAAAGTGCCATCCTTCCCTTAGGGCACCAGAGTGGTATCTTTGGGGCTCATTGTCCTTGCCTGCCTCGGAAGGTGATGCATGGTCCCTGCTTTGAATATTTCATGGAGTTAAGATGCTCAAATTAGAGATCGTCTAAAACTGCCTGT-----------CATAGGCTGCTGATTTTTGTGGCCCATTA-CCCCATGATGTCTCTGCCTG------------C---------CACAT------TTTTGGGGCAG--AAGAGTCTGTACTATTTTC---AGAACCTTGCTCCTGGACA-ACATTCCCCTCTGTTATTGGGGAGTGAAGGGGGTCTCCTTTATATAT------ATTTGAGTCCATCATTGTTCAGTTTAAAGTTAtttctcctctttccttttctttttttccttttttct-tttttGGAGAGCAGCTGTTCACCCTG---CTTTTGCTCAGAAAACCACGACA--AATCTTACTGAATCCTCTCCCCTCCTTTAAAAAAAAAAAGTTGGCAGCATTTGTAAAC--CTCTCTATCTATATTAAATGCTGTAAACGTGAACTTATCTGTACTAACGAAGTGGAGGACACACCGTGTACAGT-----GGGCTATAGAAG---AAAAACCAAATTTATAGTGTAACACACATATCCTTGTCTTTGCATGTCTC-CCCAAGCCTTTTGCATCTGAGACACCCCTTCTTTCCTTTCTTTGCTCCCCACTGCCTCCTTCCATGCTACGGGAAAAAAGT-AGAGAAGAAACAA---CCAGAGCACCCATCCCCACTTCTTTAGTCTTTTGCCTGGAATTTGGGCTCATAA---ATGGTTTCC-------------TCACTGTGCCGCA----------------------------CCAGACCCCATGTAACTGGGAGGCTGTGATTCAGTCCCCTAGGATCC--AGCTCACAGTGGTGACAGCACTTCT------------------------GGAGGCTGGTTT-TCTGGATGGA----TGTCCCCCAGGGAAGTATCTGCAGTTCTCCCACTTGAGCCATTTCAGCCATTCCACTAAAGCCCAATTGAGAGGAAAATGACAACGGGGGAGATCAGATCCTCAGCCTCTGGCTCCGGGGACCG-CTTCCGGCTCCGGGGACCGCTTCCGGCTCCGGGGACCGCTGGATGGGGTGCTTCTTACCTTCCTTGCCTGCTTTCCTGCAGGGCCTGCCGG----CTGCCCCTCCGC------------------GCGCCGAT------------TTTCTGCTCTGTGCTCACACAGTC--------CTCACTGCCTTTTCTGTCCGTTCGTAGGTCAGCAAAACCGGTGCCGAGGGAGCTGTTCTTGATGAAGCTAAAAATATCAACAAGTCTTTGTCTGCTCTTGGAAATGTGATTTCTGCCTTGGCAGAAGGGACAGTAAGTAATCCTGTCACCATC-TATTAAATAGTATTATGGGACTCTGCCTTTGGGATTTATGTATTCTTATTGGGATGGATTGCCACACATCCCAGACGCTCATTTATTTTCCTCTTTGGA-------GGAGAGATTCCTGGCTG-GAGTG-CCTG-TTGCTGGGTGCTCCACTCCACTAGGAA-GTATGAATGGTGTTGCTAACTTCCTGTGACACGGGTCATAGCATGGATAGT-----CTTTGGCAAGATCCAAAGACCTGGCTGCAAGTCCTCTTTCCACGTG-TTTGTAAGTT---------------TGGCCAGCTTGCTTCTGTAGTTTT--------TCTTTGAATG------GGCTGTCAAAACCAATACTCCTTCT-------TTTCTTAAATAGAAAACACATGTACCGTACCGGGACAGCAAGATGACTCGGATTCTCCAGGACTCTCTGGGTGGGAACTGTAGGACCACCATTGTCATTTGCTGTTCTCCTTCAGTCTTCAATGAAGCCGAGACCAAGTCCACGCTGATGTTTGGACAGAGGTGCGTGTGGGCAGGTCTCAGAAGCCATGCTCTGAGCTACGTAGTAGAGCAT i mm10.chr2 C 0 C 0 s canFam3.chr19 50611654 2031 + 53741614 TATTTCGGGCCTAAAAGCAGCTGAGAAC-GCGTCATGCTGGCAG---------------TGTCGCCTGCACAGTGTCGGGGGCTCTTGCTTTCGGTACTTGTGGGGCAG-TTTACAGTTGTGGTCCCGCGCATGGTTTCTTTTGCTCTCAT----CTGTTTTCCTTTGCCCTAAATGTGTCCACGTGAATGTGTCCGTGTGATGTGCTGGGACAAAC-----GACCTTAATCCCCAGGTGCC---------------CTAAATGGTGT-CGTCCCTCGGGCTGGCAGTGTGGCAGCCCT-GGGCTCAGTTCCCT--------------------------TGTCTGTGTCGCCTACTTCGGGGGGTCAGGATGCTCAGCTATGAAAGCGCGTT-CATCAGCACTGGGTGAG------GAGGCTGGGCTTCTTGGTGACCCATCAGCAGCATTGCTTCTCTGGCTG----CGGTGGTGTCTACACACACACGCACAAAGTTCTCGGAGAGATGAGTCTCTATCATA-TTTG--AACATATCACCCTCTGGACGTGCATTCGTTTCTACCACTTGGAGTC--------TGTCCTTTGTCCGCATCGCCAGTAGTCT------TTGCACAGTTTGTGATCCTGTCCCTGCTTTC---------------------CTGTCTTCAGAGAGCAGCTGCTCCTCCTGCATCGTTTGTCCAGCCCGCAGAGCCAGGAAGCACGCTGGCTCCCCTTTGCCCCT-------------------CGCATCTGTAAACTACTTTCTACCTAAAGCAGATGCTGTCGCTAGGACATCGCCGGGAGTCACACAGCAGAGGAGGACC-GTGTGTGATCCCTCTGGCTGCAGAGG-AGAAGAGACAAATCCACAGTGTGATACACGCTTTCTTGACTTTG-ATGCC---CTCGAGTAT----CTTTCAGACGA-----TCGTTCCCTT-------------------TTTCCTCACTGTGGG-AGTGGATAAGGGGGAGAGCAGAGTCTGGACAGCCG--CCCACTACCTCTTGTCCTTTGCCTGAAGCTGGAGCTCATAATTTACATTTCCC-CAAAATGTCCATTCATCGTGGC-CAGGACAGTGTTCTCACTTCAAGCTCCCCT-TGGGCTCCCTCCAGCGTGGAGGCTGTAGCTCAGGCGCGCGGGGCCCCGGCCTTTCTGTAGAGACGGCGCTCTTCCTCTCGCTCTCGCTCTCGCTCTCGGAGCCTGCTTTCCC-GGATGCA----TGTCCCCCAGGGAAGCATCTGCAGCTCCACCACTGGAGGCATTTCAGCCGTTCCCCTAAAACCTAATTGAGAGGAAAATGACAATAAGACAGAACAAGTCCCCAGCCTCAGGCACAAGGGAAGG--TTTGATCAACGTGATTCTTACT-------------------------TACTTTTACTTCTTCT----CGCGTTCCGGGA---------GGATTCCCGTCCGCCTCCCGAGGTCCCCAGCCCCGGGCCCTCCTGTGAATCGGACTTTTCATCTGGGTGCTTTTGCTGTCCCACGCAGCTCACTGCTTTCTCTTCCTCCTCATAGGTCAGCAAGACCGGTGCCGAGGGAGCTGTGCTCGATGAAGCTAAAAATATCAATAAATCTTTGTCTGCTCTTGGAAACGTGATCTCTGCCTTGGCAGAAGGGACAGTAAGTGATGCTGTCCCCGTCTTATTAAGTGATATTATGAGAAGTTGCTTTTTGGGTCTGTGTCCCCTC----------TTTGCCACATACCCCAGAGATTAGTTTGTTTTTC--TTTAGAAAGGGACAGAGGGAAT-CTGGCTGTAGACACCCTGCTTGCTGGGAGATCCAGTCCATTTAAAATATATGAATGGTGATGCTAATTTCCTACGACCTGGGTCCCGGAATGGGCAGTCTGAACTTTGGTCAAATCCAAAGACC------------------------------------CAATGTCC---CCCCCATCTTGCTTGTGTTTTT-TTTTTTTTTTTTGTCTCTGAATGGACAATGGCTGTAATAGCCAATACTTTTTTTTTTTTTCTTTCCTAAATAGAAAACACACGTGCCATACCGGGACAGCAAGATGACTCGGATTCTTCAGGACTCTCTGGGCGGGAACTGTAGAACCACCATTGTTATTTGCTGTTCTCCCTCTGTCTTCAACGAGGCTGAGACCAAGTCAACACTGATGTTTGGGCAAAGGTGGGTGTGGTC---TCTC-GTTCCCATGCTCTGAGCTGGGTCTT------- i canFam3.chr19 I 195 C 0 a score=96039.000000 s hg38.chr2_GL582966v2_alt 16441 31 + 96131 AAGAGTGAATGGCAAggctgggtgcaatggc s panTro4.chr2B 153137858 31 + 247518478 AAAAGTGAATGGCAAggctgggtgcaatggc i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38340889 31 + 135000294 AAGAGTGAGTGGCAAggctgggcgcaatggc i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82291939 31 - 85365473 AAGAGTGAGTGGCAAggccgggcgcgatggc i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11905257 31 + 106825570 AAGAGTGAGTGGCAAggccaggcgcaatgac i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37609512 31 + 132586672 AAGAGTGAGTGGCAAggccaggcgcaatgac i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11266459 31 + 104110932 AAGAGTGAGTGGCAAGGCCAGGCGCAAtgac i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34362536 31 + 128595539 AAGAGTGAGTGGCAAggccaggcgcaatgac i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87849700 31 - 158406734 AAGAGTGAGTGGCAAggcagggcacagtggc i calJac3.chr6 C 0 C 0 s mm10.chr2 49701157 26 + 182113224 AGGTGTGAAT-----GTCTTGGAGCAATGGT i mm10.chr2 C 0 C 0 e canFam3.chr19 50613685 0 + 53741614 C a score=123668.000000 s hg38.chr2_GL582966v2_alt 16472 41 + 96131 tcacacctgtaatcccagcactttgggaggccaaggcgggt s panTro4.chr2B 153137889 41 + 247518478 tcacacctgtaatcccagcactttgggaggccaaggcgggt i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38340920 41 + 135000294 tcacacctgtaatcccagcactttgggaggccaaggcggtt i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82291970 41 - 85365473 tcacacctgtaatcccagcactttgggaggccaaggcgggt i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11905288 41 + 106825570 tcacgtctataatcccagcactttgggaggccaaggctggt i rheMac3.chr12 C 0 I 8 s macFas5.chr12 37609543 41 + 132586672 tcacgtctataatcccagcactttgggaggccaaggctggt i macFas5.chr12 C 0 I 3 s papAnu2.chr12 11266490 41 + 104110932 tcacgtctataatcccagcactttgggaggccaaggctggt i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34362567 41 + 128595539 tcacgtctacaatcccagcactttgggaggccaaggctggt i chlSab2.chr10 C 0 I 8 s calJac3.chr6 87849731 41 - 158406734 tcatgcctgtaatcccagcactttaggaagccaaggcaggt i calJac3.chr6 C 0 C 0 e canFam3.chr19 50613685 0 + 53741614 C e mm10.chr2 49701183 0 + 182113224 C a score=1225.000000 s hg38.chr2_GL582966v2_alt 16513 7 + 96131 ggattgc s panTro4.chr2B 153137930 7 + 247518478 ggattgc i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38340961 7 + 135000294 ggattgc i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82292011 7 - 85365473 ggattgc i nomLeu3.chr20 C 0 C 0 s macFas5.chr12 37609587 4 + 132586672 aaac--- i macFas5.chr12 I 3 I 1 s papAnu2.chr12 11266531 1 + 104110932 ---c--- i papAnu2.chr12 C 0 C 0 s calJac3.chr6 87849772 7 - 158406734 ggattgc i calJac3.chr6 C 0 C 0 e canFam3.chr19 50613685 0 + 53741614 C e mm10.chr2 49701183 0 + 182113224 C e chlSab2.chr10 34362608 8 + 128595539 I e rheMac3.chr12 11905329 8 + 106825570 I a score=164318.000000 s hg38.chr2_GL582966v2_alt 16520 54 + 96131 ctgaggtcaggagtttgagaccagcctggcccacatggtgaaaccctgtctcta s panTro4.chr2B 153137937 54 + 247518478 ctgaggtcaggagtttgagaccagcctggcccacatggtgaaaccctgtctcta i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38340968 54 + 135000294 ctgaggtcaggagtttgagaccagcctggcccacatggtgaaaccctgtctcta i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82292018 54 - 85365473 ctgaggtcaggagttcgagaccaacctggcccacatggtgaaaccctgtctcta i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11905337 54 + 106825570 ccaaggtcagcagtttgagaccagcctggcccacacggtgaaaccctgtctcta i rheMac3.chr12 I 8 C 0 s macFas5.chr12 37609592 54 + 132586672 ccaaggtcagcagtttgagaccagcctggcccacacggtgaaaccctgtctcta i macFas5.chr12 I 1 C 0 s papAnu2.chr12 11266532 54 + 104110932 tcaaggtcagcagtttgagaccagcctggcccacacggtgaaaccctgtctcta i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34362616 54 + 128595539 ccaaggtcaggagtttgagaccagcctggcccacatggtgaaaccctgtctcta i chlSab2.chr10 I 8 C 0 s calJac3.chr6 87849779 54 - 158406734 ctgaggtcaggtgttcaagactagcctggacaacatggtgaaaccctgtctcta i calJac3.chr6 C 0 C 0 e canFam3.chr19 50613685 0 + 53741614 C e mm10.chr2 49701183 0 + 182113224 C a score=77819.000000 s hg38.chr2_GL582966v2_alt 16574 26 + 96131 ctaaaaatacaaaaattagccggccg s panTro4.chr2B 153137991 26 + 247518478 ctaaaaatacaaaaattagctggccg i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38341022 26 + 135000294 ctaaaaatacaaaaattagctgggcg i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82292072 26 - 85365473 ctaaaaatacaaaaattagctgggcg i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11905391 26 + 106825570 ctaaaaatgcaaaaattagctgggtg i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37609646 26 + 132586672 ctaaaaatgcaaaaattagctgggtg i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11266586 26 + 104110932 ctaaaaatgcaaaaattagctgggtg i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34362670 26 + 128595539 ctaaaaatgcaaaaattagctgggtg i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87849833 26 - 158406734 ctaaaaatacaacaattagctgggca i calJac3.chr6 C 0 C 0 s mm10.chr2 49701183 23 + 182113224 CAAAAGGGCCAAAAATTATTCAG--- i mm10.chr2 C 0 C 0 e canFam3.chr19 50613685 0 + 53741614 C a score=19764.000000 s hg38.chr2_GL582966v2_alt 16600 5 + 96131 tggtg s panTro4.chr2B 153138017 5 + 247518478 tggtg i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38341048 5 + 135000294 ttgtg i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82292098 5 - 85365473 tggtg i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11905417 5 + 106825570 tggtg i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37609672 5 + 132586672 tggtg i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11266612 5 + 104110932 tggtg i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34362696 5 + 128595539 tggtg i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87849859 5 - 158406734 tggtg i calJac3.chr6 C 0 C 0 s canFam3.chr19 50613685 5 + 53741614 TGGTG i canFam3.chr19 C 0 C 0 e mm10.chr2 49701206 0 + 182113224 C a score=189936.000000 s hg38.chr2_GL582966v2_alt 16605 66 + 96131 gcatgcgcctgtggtcccagctacttgggaggctgagtcaggagaattgcttgaactcaggaggtg s panTro4.chr2B 153138022 66 + 247518478 gcatgcgcctgtggtcccagctacttgggaggctgagtcaggagaattgcttgaactcaggaggtg i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38341053 66 + 135000294 gcatgcgcctgtggtcccagctacttgggaggctgagtcaggagaattgcttgaacttgggaggtg i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82292103 66 - 85365473 gcatgcgcctgtagtcccagctactcgggaggctgagtcaggagaattgcttgaacttgggaggtg i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11905422 66 + 106825570 gcatgtacctgtagtcccagctactcaggaggctgagtcaggagaattgcttaaactcaagaggtg i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37609677 66 + 132586672 gcatgtacctgtagtcccagctactcaggaggctgagtcaggagaattgcttaaactcaagaggtg i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11266617 66 + 104110932 gcatgtacctgtagtcccagctactcaggaggctgagtcaggagaattgcttaaactcaagaggtg i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34362701 66 + 128595539 gcatgtacctgtagtctcagctactcaggaggctgagtcaggagaattgcttaaactcaagaggtg i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87849864 66 - 158406734 gcacgtgcctgtagtcccagctactcaggaggctgaggcaagagaattgcctgaacccaggaggca i calJac3.chr6 C 0 C 0 s mm10.chr2 49701206 16 + 182113224 --------------------------------------------------TTGCATCTAGCAGGTG i mm10.chr2 C 0 I 47 e canFam3.chr19 50613690 0 + 53741614 C a score=159824.000000 s hg38.chr2_GL582966v2_alt 16671 48 + 96131 gaggttgcagtgagccaagatcataccactgcactccagcctgggcga s panTro4.chr2B 153138088 48 + 247518478 gaggttgcagtgagccaagatcataccactgcactccagcctgggcga i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38341119 48 + 135000294 gaggttgcagtgagccaagatcataccactgcactccagcctgggcga i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82292169 48 - 85365473 gaggttgcagtgagccaagatcataccactgcactccagcctgggtga i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11905488 48 + 106825570 gaggttgcagtgagccaagatcataccactgcactccagcctgggcga i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37609743 48 + 132586672 gaggttgcagtgagccaagatcataccactgcactccagcctgggcga i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11266683 48 + 104110932 gaggttgcagtgagccaagatcataccactgcactccagcctgggcga i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34362767 48 + 128595539 gaggttgcagtgagccaagatcataccactgcactccagcctgggcga i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87849930 48 - 158406734 gaggttgcagcgagccaagatcataccactgcaatctatcctgggcga i calJac3.chr6 C 0 C 0 e canFam3.chr19 50613690 0 + 53741614 C e mm10.chr2 49701222 47 + 182113224 I a score=497826.000000 s hg38.chr2_GL582966v2_alt 16719 159 + 96131 cagagcgaga--ctgtctcaaaaaa----------aaaaaaaaagaaTAGTGAGTG----GCAAGGGGCTATTGTCAGAGAATCACAAAGTAAGGGACAAACAGCCTTTTACTAAATTACATCTAGCAGG---TGATATGTAAACTTGAGGCATCACTTATTGAAGCCAAAGCAATAA s panTro4.chr2B 153138136 169 + 247518478 cagagcgaga--ctGTCTcaaaaaaacaaacaaacaaacaaaAAGAATAGTGAGTG----GCAAGGGGCTATTGTCAGAGAATCACAAAGTAAGGGACAAACAGCCTTTTACTAAATTACATCTAGCAGG---TGATATGTAAACTTGAGGCATCACTTATTGAAGCCAAAGCaataa i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38341167 162 + 135000294 cagagtgaga--ctgtctcaaaaaa-------aaaaaaaaaaaagaaTAGTGAGTG----GCAAGGGGCTATTGTCAGAGAATCACAAAGTAAGGGACAAACAGCCTTTTCCTAAATTACATCTAGCAGG---TGATATGTAAACTTGAGGCATCGCTTACTGAAGCCAAAGCaataa i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82292217 161 - 85365473 cagagcgaga--ctgtctcaaaaaa------------aaaaaaagaaTAGTGAGTGGCAAGCAAGGGGCTATTGTCAGAGAATCACAAAGTAAAGGACAAACAGCCTTTTACTAAATTACATCTAGCAGG---TGATATGTAAACTTGAGGCATCACTTATTGAAGCCAAAGCAATAA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11905536 159 + 106825570 cagagcaaga--ctgtctcaaaaaa----------agaaaaaaaTAATAGTGAGTG----GCAAGGGGCTATTGTCAGAGAATCATAAAGTAAGGGACAAACAGCCTTTTACTCAATTACATCTAGCAGG---TGATACGTAAACTTGAGGCATCACTTATTGAGGCCAAAGCAATAA i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37609791 159 + 132586672 cagagcaaga--ctgtctcaaaaaa----------agaaaaaaaTAATAGTGAGTG----GCAAGGGGCTATTGTCAGAGAATCATAAAGTAAGGGACAAACAGCCTTTTACTCAATTACATCTAGCAGG---TGATACGTAAACTTGAGGCATCACTTATTGAGGCCAAAGCAATAA i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11266731 159 + 104110932 cagagcaaga--ctgtctcaaaaaa----------agaaaaaaataatagtgaGTG----GCAAGGGGCTATTGTCAGAGAATCATAAAGTAAGAGACAAACAGCCTTTTACTCAATTACATCTAGCAGG---TGATACGTAAACTTGAGGCATCACTTATTGAGGCCAAAGCAataa i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34362815 159 + 128595539 cagagcaaga--ctgtctcaaaaaa----------agaaaaaaaTAATAGTGAGTG----GCAAGGGGCTATTGTCAGAGAATCATAAAGTAAGGGACAAACAGCCTTTTACTCAATTACATCTAGCAGG---TGATACGTAAACTTGAGGCATCACTTATTGAGGCCAAAGCAATAA i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87849978 171 - 158406734 cagagagagactctgtctcaaaaaaataaaataaaataaaaaaataaaaGTGAGTG----GCAAGGGGCTATTGGCAGAGAATCATAAAGTAAGGGACAAGCAGCCTTTTACTAAATTATATCTAGCAGG---TGATTTGTAAACCTGAGGCATCACTTATTGAGGCCAAAGCAATAA i calJac3.chr6 C 0 C 0 s canFam3.chr19 50613690 131 + 53741614 -------------------------------------------CAGGGCGTGAGGG----GTGAAGGGCTAGCATCAGCAGGAGGTAGAGTGAGGGCCAAGCAGTCCATGACAAAATTGCACCCAGCAGGTATTGGCTTGTAAACTGAAGGCATCGTTCACCAAGGCCAAAGGAAAAC i canFam3.chr19 C 0 C 0 e mm10.chr2 49701222 47 + 182113224 I a score=1274562.000000 s hg38.chr2_GL582966v2_alt 16878 375 + 96131 -TTATATTTTAAAATAATGGGCAAGAACATGCCAG----TCAAATGTATGGTGTTTAAAACAAAA-----CGGAACAACCAAACTCATTTCAGATGTGA--ATTGGAAATGCATTGGGGTGTTACTTTTGTTCTTCATGGCACTGGAGTCTACCTTTTAGGTTCAT-ATTATTTCAAGTGTGTAAATCTCAAGATTGATAACTGCCTTTAGCTCCGGT--------ATTTGCGATCCATTGCACAGTTGCTGATAAAA-CACCCAGAAAATTAGGTGAATGCAGAAGAGAGGTATAAAAGGAAAAGAAGGGGAAGG-AATC---TTTA--CCAGCACTGGAGGTAGGAGGTCTGGACTGTATGCTGAGAAGAG---ATGCA---GATGACAGC-TTCCTACTTTTAAAAA s panTro4.chr2B 153138305 375 + 247518478 -ttatattttaaaataaCGGGCAAGAACATGCCAG----TCAAATGTATGGTGTTTAAAACAAAA-----CGAAACAACCAAACTCATTTCAGATGTGA--ATTGGAAATGCATTGGGGTGTTACTTTTGTTCTTCATGGCACTGGAGTCTACCTTTTAGGTTCAT-ATTATTTCAAGTGTGTAAATCTCAAGATTGATAACTGCCTTTAGCTCCGGT--------ATTTGCGATCCATTGCACAGTTGCTGATAAAA-CACCCAGAAAATTAGGTGAATGCAGAAGAGAGGTATAAAAGGAAAAGAAGGGGAAGG-AATC---TTTA--CCAGCACTGGAGGTAGGAGGTCTGGACTGTATGCTGAGAAGAG---ACGCA---GATGACAGC-TTCCTACTTTTAAAAA i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38341329 374 + 135000294 -ttatatttaaaaataatGGGCAAGAACATGCCAG----TCAAAGGTATGGTGTTTAAAACAAAA-----CAAAACAACCAAACTCATTTCAGATGTGA--ATTGGAAATGCATTGGGGTGTTACTTTTGTTCTTCATGGCACTGGAGTCTACCTTTTAGGTTCAT-ATTATTTCAAGTACGTAAATCTCAAGATTGATAACTGCCTTTAGCTCTGGT--------ATTTGAGATCCATTGCACAGTTGCTGATAAAA-CACCCAGAAAATTAGGTGAATGCAGAAGAGAGGTATAAAAAGAAAAGAAGGGGAAGG-AATC---TTTA--CCAGCACTGGAGGTAGGAGGTCTGGACTGTATGCTGAGAAGAG---ACGCA---GCTGAC-GC-TTCCTACCTTTAAAAA i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82292378 369 - 85365473 -TTATATTTTAAAATAATGGGCAAGAACATGCCAG----TCAATGGTATGGTGTTTAAAACAA----------AACAACCAAACTCATTTCAGATGTGA--ATTGGAAATGCATTGGGGTATTACTTTTGTTCTTTGTGGCACTGGAGTCTACCTTTTAGGTTCAT-ATTATTTCAAGTGTATAAATCTCAAGATAGATAACTGCCTTTCGCTCCAGT--------ATTTGGGATCCATTGCACAGTTGCTGATGAAA-CACCCAGAAAATTAGGTGAATGCAGAATAGAGGTATAAAAAGAAAAGAAGGGGAAGG-AATC---TTTA--CCAGCACTGGAGGTAGGAGGTCTGGACTGTAAGCTGAGAAGAG---ACATA---GATGACAGC-TTCCTACCTTT-AAAA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11905695 380 + 106825570 -TTGTATTTTAAAATAATGGGCAAGAACATGCCAG----TCAAAGGTATGGTGTTTAAAACAAAACAAAGCAAAACAGCTAAACTTATTTCAGATGTGA--ATTGGAAATGCGTTGGGGTGTTACTTTTGTTCTTCATGGCACTGGAGTCTACTTTTTAGGTTCAT-ATTATTTCAAGTTTATAAATCTCAAGATTGATAACTGCCTTTAGCTCTGGT--------ATTTGGGATCCATTGCACAGTTGCTGATAAAA-CACCCAGAAAATTATGTGAATGCAGAATAGAGGTATAAAAAGCAACGAAGGGGAAGG-AATC---TTTA--CCAGCACTGGAGGTAGGAGGTCTGGACTGTATGCTGAGAAGAG---ACGTA---GATGACAGC-TTCCTACCTTTAAAAA i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37609950 380 + 132586672 -TTGTATTTTAAAATAATGGGCAAGAACACGCCAG----TCAAAGGTATGGTGTTTAAAACAAAACAAAGCAAAACAGCTAAACTTATTTCAGATGTGA--ATTGGAAATGCGTTGGGGTGTTACTTTTGTTCTTCATGGCACTGGAGTCTACTTTTTAGGTTCAT-ATTATTTCAAGTTTATAAATCTCAAGATTGATAACTGCCTTTAGCTCTGGT--------ATTTGGGATCCATTGCACAGTTGCTGATAAAA-CACCCAGAAAATTATGTGAATGCAGAATAGAGGTATAAAAAGCAACGAAGGGGAAGG-AATC---TTTA--CCAGCACTGGAGGTAGGAGGTCTGGACTGTATGCTGAGAAGAG---ACGTA---GATGACAGC-TTCCTACCTTTAAAAA i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11266890 380 + 104110932 -ttgtatttgaaaataatgggCAAGAACACGCCAG----TCAAAGGTATggtgtttaaaacaaaacaaagcaaaacagctAAACTTATTTCAGATGTGA--ATTGGAAATGCGTTGGGGTGTTACTTTTGTTCTTCATGGCACTGGAGTCTACTTTTTAGGTTCAT-ATTATTTCAAGTTTATAAATCTCAAGATTGATAACTGCCTTTAGCTCTGGT--------ATTTGGGATCCATTGCACAGTTGCTGATAAAA-CACCCAGAAAATTATGTGAATGCAGAATAGAGGTATAAAAAGCAAAGAAGGGGAAGG-AATC---TTTA--CCAGCACTGGAGGTAGGAGGTCTGGACTGTATGCTGAGAAGAG---ACGTA---GATGACAGC-TTCCTACCTTTAAAAA i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34362974 380 + 128595539 -TTATACTTTAAAATAATGGGCAAGAACACGCCAG----TCAAAGGTATGGTGTTTAAAACAAAACAAAGCAAAACAGCTAAACTTATTTCAGATGTGA--ATTGGAAATGCGTTGGGGTGTTACTTTTGTTCTTCATGGCACTGGAGTCTACCTTTTAGGTTCAT-ATTATTTCAAGTTTATAAATCTCAAGATTGATAACTACCTTTAGCTCTGGT--------ATTTAGGATCCATTCCACAGTTGCTGATAAAA-CACCCAGGAAATTATGTGAATGCAGAATAGAGGTATAAAAAGCAAAGAAGGGGAAGG-AATC---TTTA--CCAGCACTGGAGGTAGGAGGTCTGGACTGTATGCTGAGAAGAG---ACGTA---GATAACAGC-TTCCTACCTTTAAAAT i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87850149 374 - 158406734 -TTATGTTCTAAAATAATGGACAAGAACATGCCAGCTTTTCAAAGGTACGGTGCATAAAACAAAA----------CAATCAAACTTATTGCAGATGTGA--CTTGGAAATACACT-GGGTGTTACTTTTGTTCTTCATGGCACTGGAGTCTACCTTTTAGATTCATAATTATTTCAAGTGTATACATCTCAAGATTGATAACTGCCTTTAACTCCGAT--------ATTTGGGATCCTTTGCACAGTTGCTGATAAAA-CACCCAAAAGCTTAGGTGAATACAGGATAGAGGTATAAATAGAAAAGAAGGGGAAGG-AATC---TTTA--TCAGCACTGGAGGTAGGAGGTCTGGACTGTATGCTGAAGAGAG---ACACA---GAAGACATC-TTGCTACCTTTGAAAA i calJac3.chr6 C 0 C 0 s mm10.chr2 49701269 365 + 182113224 -TTTTTTTTTTAAGTAGAGGTCAGGAATGTGCCTG----TCTGAAGAATGCTATT--GAACAAAGCAAAGCAAAACA-CCCAACTCATT------------GTTGCA-------------GCTACTTTTGTTCTTTGTGGACTCAAAGCCTAACCTTTAGCTCTAT-AGGATTTCGCATACATAAATCTCAAGATTGATAAGCACTTTTAACTCCAGTTATTTGAAATTTGAAATTCATTTCAACATTATTCAGGAAAGCAATCAGAAACTGAGATAAAGGCAGAGTAGAGGCGTGTATAATGGA----GGAAAGG-AACCCAATGCA--TTAACCCTGAGGGTGGGAGGCATGAGGTGTGTGTGGAGGAAAG----CGCAAGGGATGACCACATTCTCACTGTTTGAAA i mm10.chr2 I 47 I 262 s canFam3.chr19 50613821 350 + 53741614 TTAACGTTTTACAATAATTGGCAGAGATACGCCAA----TCAGAGGTATGATATTTGTAA-----------AAAGTGCTCATACGTAGTATAGATGTGATTGCTGGTAACTCAGTGCAGTGTTGCTTTTGCTCTTCACAGAA-TAAACTCTCACTCTCGGGTTCAC-AGGATTTCGAGTGTGAACAGCTCAAGATTGATAACTATCTTTAACTCTAAT--------ATTTGGGTTCCATTACAGAGATGCTAATAGAA-CAGCCAGAAACTTGGATGCATGTAGGGTACCTGCATAAATAGGAAAGGGGGCGAAGGAAATC---CTCATGCTAACCTTGGGAGTGGGAGGTACACACTGGATGCTGAGGAGAGGGCACG------------------------------- i canFam3.chr19 C 0 C 0 a score=335184.000000 s hg38.chr2_GL582966v2_alt 17253 104 + 96131 TTCCCACATGAGACTTCCTAGATCCCTGGGAGGTGTCCATAGGTGGGCAGCAGGTACGACTCCATAATCGTAAAGCAAGAGTTACATGTGTGGTTTGGTTCATA s panTro4.chr2B 153138680 104 + 247518478 TTCCCACATGAGACTTCCTAGATCCCTGGGAGGTGTCCATAGGTGGGCAGCAGGTACGACTCCATAATTGTAAAGCAAGAGTTACATGTGTGGTTTGGTTCATA i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38341703 96 + 135000294 TTCCCACATGAGACTTCCTAGATCCCTGGGAGGTGTCCGTAGGTGGGCAGCAGGTACGACTCCATAATCGTAAAGCA--------ATGTGTGGTTTGGTTCATA i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82292747 104 - 85365473 TTCCCACATGAGACTTCCTAGATCCCTGGGAGGTGTCCATAGGTGGGCAGCAGGTACGACTCCATAATGGTAAAGCAAGAGTTATGTATGTGGTTTGGTTCATA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11906075 104 + 106825570 TACCCACATGAGACTTCCTAGATCCCTGGGAGGTGTCCATAGGTGGGCAGCAGGTGTGACTCCATAATCGTAAAGCAAGAGTTACATGTGTGGTTTGGTTCATA i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37610330 104 + 132586672 TACCCACATGAGACTTCCTAGATCCCTGGGAGGTGTCCATAGGTGGGCAGCAGGTGTGACTCCATAATCGTAAAGCAAGAGTTACATGTGTGGTTTGGTTCATA i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11267270 104 + 104110932 TACCCACATGAGACTTCCTAGATCCCTGGGAGGTGTCCATAGGTGGGCAGCAGGTATGACTCCATAATCGTAAAGCAAGAGTTACATGTGTGGTTTGGTTcata i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34363354 104 + 128595539 TACCCACATGAGACTTCCTAGATCCCTGGGAGGTGTCCATAGGTGGGCAGCAGGTATGACTCCATAATCGTAAAGCAAGAGTTACATGTGTGGTTTGGTTCATA i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87850523 104 - 158406734 TACCCACACGAGGCATCCTACATCCCCGGGAGGTGTCCATAGGTGGGCAGCAAGTACAACTCCATAATCACAAAGCAACAGTTACATGTGTGGTTTGGTTCCTA i calJac3.chr6 C 0 C 0 s canFam3.chr19 50614171 94 + 53741614 ---CCAAATGAGATTTCCTGGATCTCTGAGAACT---CACAGGTGGGCAGGAGG-ACAGTGCGGTAACCCTGAGGCG---TTCATGCGTGTGGGTCCGCGTGCG i canFam3.chr19 C 0 C 0 e mm10.chr2 49701634 262 + 182113224 I a score=609189.000000 s hg38.chr2_GL582966v2_alt 17357 188 + 96131 T----CTTT-TTTTCTTGTCACTTTCTTTTTTACCTACCCCCTCCCACTGTCCAAGGCCTGACCTCCTTCAGGCATGTTTCCTCAGTTCCAGTGTTTAGGTTCTATCCTTCAGCCCTCGTGCCTCAGTGTTCATTCCCAGAGTGCTTGCGGTTCTGTGG-ATTGGGCGATCTGAACATCTTCAGTGCTCAGCGA s panTro4.chr2B 153138784 188 + 247518478 T----CTTT-TTTTCTTGTCACTTTCTTTTTTACCTACCCCCTCCCACTGTCCAAGGCCTGACCTCCTTCAGGCATGTTTCCTCAGTTCCAGTGTTTAGGTTCTATCCTTCAGCCCTCGTGCCTCAGTGTTCATTCCCAGAGTGCTTGCGGTTCTGTGG-ATTGGGCGATCTGAACATCTTCAGTGCTCAGCAA i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38341799 192 + 135000294 TCTTCCTTT-TTTTCTTGTCACTTTCTTTTTTACCTACCCCCTCCCACTGTCCAAGGCCTGACCTCCTTCAGGCATGTTTCCTCAGTTCCAGTGTTTAGGTTCTATCCTTTAGCCCTCATGCCTCAGTGATCATTCCCAGAGTGCTTGGGGTTCTACGG-ATTGGGTGATCTGAACATCTTCAGTGGTCAGCGA i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82292851 192 - 85365473 TCTTCCTTT-TTTTCTTGTCGCTTTCTTTTTTACGTACCCCCTCCCACTGTCCAAGGCCTGACCTCCTTCAGGCATGTTTCCTCAGTTCCAGTGTTTAGGTTCTGTCCTTCAGCCCTCGTGCCTCAGTGTTCATTCCCAGAGTGCTTGGGGTTCTGTGG-ATTGGGCGATCTGAACATCTTCAGTGCTCAGTGA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11906179 192 + 106825570 TCTTCCTTT-TTTTCTTGTCACTTTCTTTTTTACCTACCCCCTCCCACTGTCCAAGGCCTGACCTCCTTCAGGCATGTTTCCTCAGTTCCAGTGTTTAGGTTCTATCCTTCAGCCCTCGTGCCTCAGTGTTCATTCCCAGAGTGCTTGGGGTGCTGTGG-ATCGGGCGATCTGAACATCTTCAGTGCTCAGTGA i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37610434 192 + 132586672 TCTTCCTTT-TTTTCTTGTCACTTTCTTTTTTACCTACCCCCTCCCACTGTCCAAGGCCTGACCTCCTTCAGGCATGTTTCCtcagtttcagtgtttaggttctatccttcagccctcgtgcctcagtgttcaTTCCCAGAGTGCTTGGGGTGCTGTGG-ATCGGGCGATCTGAACATCTTCAGTGCTCAGTGA i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11267374 192 + 104110932 tcttccttt-ttttcttgtcactttcttttttaccTACCCCCTCCCACTGTCCAAGGCCTGACCTCTTTCAGGCATGTTTCCTCAGTTCCAGTGTTTAGGTTCTATCCTTCAGCCCTCGTGCCTCAGTGTTCATTCCCAGAGTGCTTGGGGTGCTGTGG-ATTGGGCGATCTGAACATCTTCAGTGCTCAGTGA i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34363458 192 + 128595539 TCTTCCTTT-TTTTCTTGTCACTTTCTTTTTTACCTACCCCCTCCCACTGTCCAAGGCCTGACCTCTTTCAGGCATGTTTCCTCAGTTCCAGTGTTTAGGTTCTATCCTTCAGCCCTCGTGCCTCTGTGTTCATTCCCAGAGTGCTTGGGGTGCTATGG-ATTGGGCGATCTGAACATCTTCAGTGCTCAGTGA i chlSab2.chr10 C 0 I 187 s calJac3.chr6 87850627 193 - 158406734 TCTTCCTTTATTTTCTTGTCACTTTCTTTTTCACCTACCCCCTCCCACTGTCCAAGGCCTGACCTCCTTTAGGCACATTTCCTCAGTTCTAGTATTTAGGTTCTGTCCTTCAGCCCTCGTGCCTCAGTGTTCATTTCTAGAGTGTTTGAGGTGCTGTGG-ATTGGGCGATCTGAACATCTTCAGTGCTCAGCAA i calJac3.chr6 C 0 C 0 s mm10.chr2 49701896 179 + 182113224 ---TCTTGT-CTTTCTTGACACGGTCCTTTTCACCTACCTTACCCTGCTGCCACAG--CTGACCTC-TTCAGTCTTGTTTGTTCAGTTTC------CAGACCCTGTCTTCTCAGCTGTGTTTTTGGGTGTTGGGTACCTAA--GCTTGGGATACTGTGGCCTTGGATGGTCTGAGCATCGTTGATGCTCATTGT i mm10.chr2 I 262 C 0 s canFam3.chr19 50614265 69 + 53741614 -----------------------------CCTGCCCAGCCCTGCCTGCCGCCCAGAGCTCG-CCTCCCTTGGCCGTGGTCCCTCAGTGCCAGG------------------------------TCAGCG----------------------------------------------------------------- i canFam3.chr19 C 0 C 0 a score=10476.000000 s hg38.chr2_GL582966v2_alt 17545 3 + 96131 GCT s panTro4.chr2B 153138972 3 + 247518478 GCT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38341991 3 + 135000294 GCT i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82293043 3 - 85365473 GCT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11906371 3 + 106825570 GCT i rheMac3.chr12 C 0 I 8 s macFas5.chr12 37610626 3 + 132586672 GCT i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11267566 3 + 104110932 GCT i papAnu2.chr12 C 0 C 0 s calJac3.chr6 87850820 3 - 158406734 GCT i calJac3.chr6 C 0 C 0 s mm10.chr2 49702075 3 + 182113224 GCT i mm10.chr2 C 0 C 0 e canFam3.chr19 50614334 0 + 53741614 C e chlSab2.chr10 34363650 187 + 128595539 I a score=9400.000000 s hg38.chr2_GL582966v2_alt 17548 22 + 96131 CTGATGTTGGATGAGGGCTCAG s panTro4.chr2B 153138975 22 + 247518478 CTGAGGTTGGATGAGGGCTCAG i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38341994 22 + 135000294 CTGAGGTTGGATGAGGGCTCAG i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82293046 22 - 85365473 CTGAAGTTGGATGAGGGCTCAG i nomLeu3.chr20 C 0 C 0 s macFas5.chr12 37610629 8 + 132586672 --------------GAGCTTAG i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11267569 8 + 104110932 --------------GAGCTTAG i papAnu2.chr12 C 0 C 0 s calJac3.chr6 87850823 6 - 158406734 --------------GAGCTT-- i calJac3.chr6 C 0 C 0 s mm10.chr2 49702078 8 + 182113224 --------------AATTCCAG i mm10.chr2 C 0 C 0 e canFam3.chr19 50614334 0 + 53741614 C e chlSab2.chr10 34363650 187 + 128595539 I e rheMac3.chr12 11906374 8 + 106825570 I a score=2661.000000 s hg38.chr2_GL582966v2_alt 17570 2 + 96131 AG s panTro4.chr2B 153138997 2 + 247518478 AG i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38342016 2 + 135000294 AG i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82293068 2 - 85365473 AG i nomLeu3.chr20 C 0 C 0 s chlSab2.chr10 34363837 2 + 128595539 AG i chlSab2.chr10 I 187 C 0 s calJac3.chr6 87850829 2 - 158406734 AG i calJac3.chr6 C 0 C 0 s mm10.chr2 49702086 2 + 182113224 AC i mm10.chr2 C 0 C 0 e canFam3.chr19 50614334 0 + 53741614 C e macFas5.chr12 37610637 0 + 132586672 C e papAnu2.chr12 11267577 0 + 104110932 C e rheMac3.chr12 11906374 8 + 106825570 I a score=1834559.000000 s hg38.chr2_GL582966v2_alt 17572 465 + 96131 GGCTGAGGTTGGATGTGGATTCTGCTGCCTTCGGTTTGTTTAATTCTGAACAATCATGTGATCTTTAGACAAGTCACCAGTGCTCTGTGGGCTTTAACTAGCTCATTTGTACATGGATGCACAGAGCACT-TCCCTGCCTTCTCCCTGGGAGTGTGTGTTGTGTGGTTATGCCTAAGGAATAGTTTAAGATG---AGAGAAAGGACAGATGGGGGTGGGCATTCTGTCTGGGAAATTGTTATGGCTTGTTTAAACTGCATTAAGCCCC--AGTCATTTCCTGAGCCCTCAACAGAACATAGAATTACACAGCCGTGGCACCTGTGGGATGTCTAAATAAATAATAATTATATTGAAATGTTGTAGACCTAATATATCTTTTAAACTGGATTTGGGTCCTTTACTTCCTCCCAAATCGCTTCCTTGATTAGTTAAATGCTTAGGCCAAGGGGGTTGCAGTAGGATAACACCT s panTro4.chr2B 153138999 465 + 247518478 GGCTGAGGTTGGATGTGGATTCTGCTGCCTTCGGTTTGTTTAATTCTGAACAATCATGTGATCTTTAGACAAGTCACCAGTGCTCTGTGGGCTTTAACTAGCTCATTTGTACATGGATGCACAGAGCACT-TCCCTGCCTTCTCCCTGGGAGTGTGTGTTGTGTGGTTATGCCTAAGGAATAGTTTAAGATG---AGAGAAAGGACAGATGGGGGTGGGCATTCCGTCTGGGAAATTGTTATGGCTTGTTTAAACTGCATTAAGCCCC--AGTCATTTCCTGAGCCCTCAACAGAACATAGAATTACACAGCCGTGGCACCTGTGGGATGTCtaaataaataataattatattGAAATGTTGTAGACCTAATATATCTTTTAAACTGGATTTGGGTCCTTTACTTCCTCCCAAATCGCTTCCTTGATTAGTTAAATGCTTAGGCCAAGGGGGTTGCAGTAGGATAACACCT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38342018 465 + 135000294 GGCTGAGGTTGATTGTGGATTCTGCTGCCTTCGGTTCGTTTAATTCTGAACAATCATGTGATCTTTAGACGAGTCACCAGTGCTCTGTGGGCTTTAACTAGCTCATTTGTACATGGATGCACAGAGCACT-TCCCTGCCTTCTCCCTGGGAGTGTGTGTTGTGTGGTTATGCCTAAGAAATAGTTTAAGATG---AGAGAAAGGACAGATGGGGGTGGGCATTCTGTCTGGGAAATTGTTATGGCTTGTTTAAACTGCATTAAGCCCC--AGTCATTTCCTGAGCCCTCAACAGAACATAGAATTATGCAGCCGTGGCACCTGTGGGATGTCtaaataaataataattatattGAAATGTTGTAGACCTAATATATCTTTTAAACTGGATTTGGGTCCTTTACTTCCTCCCAAATCGCTTTCTTGATTAGTTAAATGCTTAGGCCAAGGGGGTTGCAGTAGGATAACACCT i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82293070 465 - 85365473 GGCTGAGGTTGGATGTGGATTCTGCTGCCATCGGTTCATTTAATTCTGAACAATCATGTGATCTTTAGACAAGTCACCAGTGCTCTGTGGGCTTTAACTAGCTCATTTGTACATGGATGCACAGAGCACT-TCCCTGCCTTCTCCCTGGGAGTGTGTGTTGTGTGGTTATGCCTAAGGAATAGTTTAAGATG---AGAGAAAGGACAGATGGGGGTGGGCATTTTGTCTGGGAAATTGTTATGGCTTGTTTAAACTGCATTAAGCCTC--AGTCATTTCCTGAGCCCTCAACAGAACATAGAATTACGCAGCCATGGCACCTGTGGGATGTCTAAATAAATAATAATTATATTGAAATGTTGTGGACCTAATATATCTTTTAAACTGGATTTGGGTCCTTTACTTCCTCCCAAATCGCTTCCTTGATTAGTTAAATGCTTAGGCCAAGGGAGTTGCAGTAGGATAACACCT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11906382 465 + 106825570 GGCTGAGGTTGGATGTGGATTCTGCTGCCATCGGTTCATTTAATTCTGAACAATCATGTGATCTTTAGACAGGTCACCAGTGCTCTGTGGGCTTTAACTAGCTCATTTGTGAATGGATGCACAGAGCACT-TCCCTGCCTCCTCCCTGGGAGTGTGTGTTGTGTGGTTATGCCTAAGGAATAGTTTAAGATG---AGAGAAAGGACAGATGGGGGTGGGCATTCTGTCTGGGATATTGTTATGGCTTGTTTAAACTGCATTAAGCCCC--AGTCATTTCCTGAGCCCTCAACAGAACATAGAATTATGCAGCCATGGCACCTGTGGGATGTCtaaataaataataattatattGAAATGTTGTAGAGCTAATATATCTTTTATACTGGATTTGGGTCCTTTACTTCCTCCCAAATTGCTTCCTTGATTAGTTAAATGCTTAGGCCAAGGGGGTTGCAGTAGGATAACACCT i rheMac3.chr12 I 8 C 0 s macFas5.chr12 37610637 465 + 132586672 GGCTGAGGTTGGATGTGGATTCTGCTGCCATCGGTTCATTTAATTCTGAACAATCAtgtgatctttagacaagtcaccagtgctctgtgggctttaactagctcatttgtgaatggatgcacagagcact-tccctgcctcctccctgggagtgtgtgttgtgtggTTATGCCTAAGGAATAGTTTAAGATG---AGAGAAAGGACAGATGGGGGTGGGCATTCTGTCTGGGAAATTGTTATGGCTTGTTTAAACTGCATTAAGCCCC--AGTCATTTCCTGAGCCCTCAACAGAACATAGAATTATGCAGCCATGGCACCTGTGGGATGTCTAAATAAATAATAATTATATTGAAATGTTGTAGAGCTAATATATCTTTTATACTGGATTTGGGTCCTTTACTTCCTCCCAAATTGCTTCCTTGATTAGTTAAATGCTTAGGCCAAGGGGGTTGCAGTAGGATAACACCT i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11267577 465 + 104110932 GGCTGAGGTTGGATGTGGATTCTGCTGCCATCGGTTCATTTAATTCTGAACAATCATGTGATCTTTAGACAAGTCACCAGTGTTCTGTGGGCTTTAACTAGCTCATTTGTGAATGGATGCACAGACtact-tccctgcctcctccctgggAGTGTGTGTTGTGTGGTTATGCCTAAGGAATAGTTTAAGATG---AGAGAAAGGACAGATGGGGGTGGGCATTCTGTCTGGGAAATTGTTATGGCTTGTTTAAACTGCATTAAGCCCC--AGTCATTTCCTGAGCCCTCAACAGAACATAGAATTATGCAGCCATGGCACCTGTGGGatgtctaaataaataataattatattgaaATGTTGTAGAGCTAATATATCTTTTAAACTGGATTTGGGTCCTTTACTTCCTCCCAAATTGCTTCCTTGATTAGTTAAATGCTTAGGCTAAGGGGGTTGCAGTAGGATAACACCT i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34363839 465 + 128595539 GGCTGAGGTTGGATGTGGATTCTGCTGCCATCGGTTCATTTAATTCTGAACAATCATGTGATCTTTAGACAAGTCACCAGTGCTCTGTGGGCATTAACTAGCTCAGTTGTGAATGGATGCACAGAGCACT-TCCCTGCCTCCTCCCTGGGAGTGTGTGTTGTGTGGTTATGCCTAAGGAATAGTTTAAGATG---AGAGAAAGGACAGATGGGGGTGGGCATTCTGTCTGGGAAATTGTTATGGCTTGTTTAAACTGCATTAAGCCCC--AGTCATTTCCTGAGCCCTCAACAGAACATAGAATTATGCAGCCATGGCACCTGTGGGATGTCTAAATAAATAATAATTATATTGAAATGTTATAGAGCTAATATATCTTTTAAACTGGATTTGGGTCCTTTACTTCCTCCCAAATTGCTTCCTTGATTAGTTAAATGCTTAGGCTAAGGGGGTTGCAGTAGGATAACACCT i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87850831 462 - 158406734 GGCTGGA---AAATGTGGATTCTGCTGCCACTAGTCCATTCAATTCCGAAGAATCACATGATCTTTAGACAAGTCACCAGTGCTCTGTGAGCTTTAACTAGTTCATTTGTAAATGGATGCACAGAGCACT-TCCCTGCCTTCTCCCTGGGAGTGTGTGTTGTATGGTTATGCCTAAGGAATAGTTTAAGATG---AGAGAAAGGACAGATGGGGGTGGGCATTCTGTCTGGGAAATTATTATGGCTTGTTTAAACTGAATTAAGTCCC--AGTCATTTCCTGAGCCCTCAACAGAACATAGAATTACATAGTTGTGGCACCTGTGGGATGTCtaaataaataataattatattGAAATGTTGTAGAGCTAATATATCTTTTAAACTGGATTTGGGTCCTTTACTTCCTCCCAAATCACTTCCTTGATTAGTTAAATGCTTAGGCCAAGGGGGTTGCCGTAGGATAACACCT i calJac3.chr6 C 0 C 0 s mm10.chr2 49702088 410 + 182113224 AGATGTGCTGGG--GTGGATTCTCCTATCATTATTACATTCAGTGCTGAACAGCTGC-TGATCTAT----------------CTCTGTGCGCCTTTACTGCCTCAGGTGTCAATGGG-GTTCCCAGTGTT-CCCCTGTTATAGACCTGGGA--GTATGTTGTATGGTAATGCCCAAGAAGTCATTT-------------------CAAATGGGGATGGGTGCTCTG--TGGAAAATTGCTACAGC-TGTTTGAACTGCATTGCACATCGTAGACATTTTCTGAG-TCTCAACAGGACATAGGATTCTTTGG---------CTGTGGGCTGTC----TAAACAATAATTGTGTTGCAACGTTGTAGGATTAATCTATCTCTTAAA--GGATCGGGGTCCTTTGTTTCTTCCTAAATGACTTCTTTGATTTGATACAGGCTTGAGGTAGTGGCATTGAATCAAGGTGACACCT i mm10.chr2 C 0 I 10 s canFam3.chr19 50614334 427 + 53741614 -------------TGCGGCTTCCAGGGCCACCAGGCCCTTCCATCCTGAACACCTGTGCAGCCTTCGGACAAGT--------CTCTG----------CTGCCTTATTTGTAAATGGGTGCACAGAGCTCTCCCCCTGCCTTCCTCCTGGGA--CTGTGCTGTGTGCTCCTGCCTGAGAAATAGTTTAAGGTGCCTAGAGGAAGGACAGATGGGGGTGGGCAGGCTGCATGGGAAATTGTTAGGGCTTGTTTAAACTGCATTAAACCCC--AGTCATTTCCTGAGCCCACAGCAGAACATAGAATTACCCAGTCATGGCACCTGTGGGACGTCTAAATAAATAATAATTACATTGAAATGTTGTAGAACTCATCTATCTTTTAAACTGGATTTGGGTCCT--------GCTCAGATCACTTCCTTGATTAGTCAAATGCTTAGGTCA-GTGAATTGTGGTAGGAAAATGCCT i canFam3.chr19 C 0 C 0 a score=275141.000000 s hg38.chr2_GL582966v2_alt 18037 78 + 96131 ACTTTCCTCAAGGGTC-TCAGAAACCCACAAACCAGCATCTGCTTATGGAAAACAAGATCGCAT-------------CCTGCCCAGTGTCTT s panTro4.chr2B 153139464 78 + 247518478 ACTTTCCTCAAGGGTC-TCAGAAACCCACAAACCAGCATCTGCTTATGGAAAACAAGATCGCAT-------------CCTGCCCAGTGTCTT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38342483 78 + 135000294 ACTTTCCTCAAGGGTC-TCAGAAACCCACAAACCAGCATCTGCTTATGGAAAACAAGATCGCAT-------------CCTGCCCAGTGTCTT i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82293535 78 - 85365473 GCTTTCCTCAAGGGTC-TCAGAAACCCACAAACCAGCATCTGCTTATGGAAAACAAGATCGCAT-------------CCTGCCCAGTGTCTT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11906847 78 + 106825570 ACGTTCCTCAAGGGTC-TCAGAAACCCACAAACCAGCATCTGCTTATGGAAAACAAGATCGCAC-------------CCTGCCCAGTGTCTT i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37611102 78 + 132586672 ACGTTCCTCAAGGGTC-TCAGAAACCCACAAACCAGCATCTGCTTATGGAAAACAAGATCGCAC-------------CCTGCCCAGTGTCTT i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11268042 78 + 104110932 ACGTTCCTCAAGGGTC-TCAGAAACCCACAAACCAGCATCTGCTTATGGAAAACAAGATTGCAC-------------CCTGCCCAGTGTCTT i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34364304 78 + 128595539 ATGTTCCTCGAGGGTC-TCAGAAACCCACAAACCAGCATCTGCTTATGGAAAACAAGATCGCAC-------------CCTGCCCAGTGTCTT i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87851293 78 - 158406734 GCTTTCCTCAAGGGTC-TCAGGAATCCACAGACCAGCATTTGCTTATGGAAAACGAGATCACAT-------------CCTGTCCAGTGTCTT i calJac3.chr6 C 0 C 0 s canFam3.chr19 50614761 92 + 53741614 GCTTTCCTCAAGGGTCATGAGATACCCCTAAAGCAGTATCAGCTTATGGGAAGCACAGCTCTATGGTGATCATCTTGCCTGCCCTGTGTCTC i canFam3.chr19 C 0 I 167 e mm10.chr2 49702498 10 + 182113224 I a score=1475542.000000 s hg38.chr2_GL582966v2_alt 18115 461 + 96131 AAA-------------------------------------------CTTGAGCTTTAACAATTTCCTCTGAAGACATGTTTGAGCAAACCAGCTCTAAGTGCATTTATAAAGGAAAC--------ATCTCTTCAAAAAAAATCCTTACCAGCAAAGCAAAAATATTCTGGCTCTTCTCAAGCCAGAGTCACCGTGGGGCATTGGCTATCT-TTGCAAGGCCCAGTCACCTTGGGGCATTGCTGTTATCAGGAGGTATTTGCAGCTGTCTACAGGAAGCATTT---------------TGAATAT-------------------------CAGT---------------------TAGTGTCTAATATATGTCAGGTGTGTCAAA--ATTATAGCACTTCTGACAGCAattatctcacctttgtacagggtatgaaatcaaggcttaggtgcaaagcccttggataccatacctgagaccacacagccagt-aagtgacTAAACATGTAGGATGTCCTAGG----------------------ATGCAGTGTC-----Tgagcacagccctttgggtcagtaagcccagtgttgaagctaa-ttct s panTro4.chr2B 153139542 462 + 247518478 AAA-------------------------------------------CTTGAGCTTTAACAATTTCCTCTGAAGACATGTTTGAGCAAACCAGCTCTAAGTGCATTTATAAAGGAAAC--------ATCTCTTCAAAAAAAATCCTTACCAGCAAAGCAAAAATAATCTGGCTCTTCTCAAGCCAGAGTCACCGTGGGGCATTGGCTATCT-TTGCAAGGCCCAGTCACCTTGGGGCATTGCTGTTATCAGGAGGTATTTGCAGCTGTCTACAGGAAGCATTT---------------TGAATAT-------------------------CAGT---------------------TAGTGTCTAATATATGTCAGGTGTGTCAAA--ATTATAGCACTTCTGACAGCAATTATCTCACCTTTGTACAGGGTATGAAATCAAGGCTTAGGTGCAAAGCCATTGGATACCATACCTGAGACCACACAGCCAGTAAAGTGACTAAACATGTAGGATGTCCTAGG----------------------ATGCAGTGTC-----Tgagcacagccctttgggtcagtaagcccagtgttgaagctaa-ttct i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38342561 461 + 135000294 AAA-------------------------------------------CTTGAGCTTTAACAATTTCCTCTGAAGACATGTTTGAGCAAACCAGCTCTAAATGCATTTATAAAGGAAAC--------ATCTCTTCAAAAAAAATCCTTACCAGCAAAGCAAAAATATTCTGGCTCTTCTCAGGCCAGAGTCACCGTGGGGCATTGGCTATCT-TTGCAAGGCCCAGTCACCTTGGGGCATTGCTGTTATCAGAAGGTATTTGCAGCTGTCTACAGGAAGCATTT---------------TGAATAT-------------------------CAGT---------------------TAGTGTCTAATATGTGTCAGGTGTGTCAAA--ATTATAGCACTTCTGACAGCAattatctcacctttgtacagggtatgaaatcaaggcttaggtgcaaagccattggataccatacctgagaccacacagccagt-aagtgactaaacatgtaggatGTCCTAGg----------------------atgcagtgtc-----tgagcacagccctttgggtcagtaagcccagtgttgaagctaa-ttct i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82293613 457 - 85365473 AAA-------------------------------------------CTTGAGCTTTAACAATTTCCTCTGAAGACATGTTTGAGCAAACCAGCTCTAAATGCATTTATAAAGAAAAC--------ATCTCTTCAAAAAAAATCCTTACCAGCAAAGCAAAAATATTCTGGCTCTTCTCAAGCCAGAGTCACTGTGGGGCATTGGCTATCT-TTGCAAGGCCCAATCACCTTGGGGCACTGCTGTTATCAGCAGGTATTTGCAGCTGTCTACAGGAAGCATTT---------------TGAATAT-------------------------CAGT---------------------TAGTATCTAATATATGTCAGGTGTGTCAGA--ATAATAGCACTTCTGACAGCAattatctcacctttgtacagagtatgaaatcaaggcttaggtacaaagccattggataccatacctgagatcacacagccagt-aagtgacTAAACATGTAGGATGTCCTAGG----------------------ATGCAGTGTC-----Tgagcacagacctttag---aattagcccagtgttg-ggctaa-ttct i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11906925 460 + 106825570 AAA-------------------------------------------CTTGAGCTTTAACAATTTCCTCTGAAGACATGTTTGAGCAAACCAGCTCTAAATGCATTTATAAAGGAAAC--------ATCGCTTCAAAAAAAATCCTTACCAGCAAAGCAAAAATATTCTGGCTCTTTTCAAGCCACAGTCACCGTGGGGCATTGGCTATCT-TTGCAAGGCCCAGTCACCTTGGGGCATTGCTGTTATCAGGAGGTATTTGCAGC-GTCTACAGGAAGCATTT---------------TGAATAT-------------------------CAGT---------------------TAGTGTCTAATATATGTCAGGTGTGTCAAA--ATTATAGCACTTCTGACAGCAattatctcacctttgtacagagtatgaaatcaaggcttaggtgcaaagccattggataccatacctgagaccacacagccagt-aagtgacTAAACATGTAGGATGTCCTAGG----------------------ATGCATAGTC-----TGAGCACAGCCCTTTGGTTCAGTAAGCTCAGTGTTGAAGCTAA-TTCT i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37611180 460 + 132586672 AAA-------------------------------------------CTTGAGCTTTAACAATTTCCTCTGAAGACATGTTTGAGCAAACCAGCTCTAAATGCATTTATAAAGGAAAC--------ATCGCTTCAAAAAAAATCCTTACCAGCAAAGCAAAAATATTCTGGCTCTTTTCAAGCCACAGTCACCGTGGGGCATTGGCTATCT-TTGCAAGGCCCAGTCACCTTGGGGCATTGCTGTTATCAGGAGGTATTTGCAGC-GTCTACAGGAAGCATTT---------------TGAATAT-------------------------CAGT---------------------TAGTGTCTAATATATGTCAGGTGTGTCAAA--ATTATAGCACTTCTGACAGCAattatctcacctttgtacagagtatgaaatcaaggcttaggtgcaaagccattggataccatacctgagaccacacagccagt-aagtgactaaacatgtaggatGTCCTAGG----------------------ATGCATAGTC-----Tgagcacagccctttggttcagtaagctcggtgttgaagctaa-ttct i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11268120 460 + 104110932 AAA-------------------------------------------CTTGAGCTTTAACAATTTCCTCTGAAGACATGTTTGAGCAAACCAGCTCTAAAtgcatttataaaggaaac--------atctcttcaaaaaaaatccTTACCAGCAAAGCAAAAATATTCTGGCTCTTTTCAAGCCACAGTCACCGTGGGGCATTGGCTATCT-TTGCAAGGCCCAGTCACCTTGGGGCATTGCTGTTATCAGGAGGTATTTGCAGC-GTCTACAGGAAGCATTT---------------TGAATAT-------------------------CAGT---------------------TAGTGTCTAATATATGTCAGGTGTGTCAAA--ATTATAGCACTTCTGACAGCAATTATCTCACCTTTGTACAGAGTATGAAATCAAGGCTTAGGTGCAAAGCCATTGGATACCATACCTGAGaccacacagccagt-aagtgacTAAACATGTAGGATATCCTAGG----------------------ATACATGGTC-----TGAGCACAGCCCTTTGGTTCAGTAAGCTCAGTGTTGAAGCTAA-TTCT i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34364382 423 + 128595539 AAA-------------------------------------------CTTGAGCTTTAACAATTTCCTCTGAAGACATGTTTGAGCAAACCAGCTCTACATGCATTTATAAAGGAAAC--------ATCTCTTC-AAAAAAATCCTTACCAGCAAAGCAAAAATATTCTGGCTCTTTTCAAGCCACAGTCACCG-------------------------------------TGGGGCATTGCTGTTATCAGGAGGTATTTGCAGT-GTCTACAGGAAGCATTT---------------TGAATAT-------------------------CAGT---------------------TAGTGTCTAATATATGTCAGGTGTGTCAAA--ATTATAGCACTTCTGATAGCAattatctcacctttgtacagagtatgaaatcaaggcttaggtgcaaagccattggataccatacctgagaccacacagccagt-aagtgacTAAACATGAAGGATGTCCTAGG----------------------CTGCATGGTC-----TGAGCACAGCCCTTTGGTTCAGTAAGCTCAGTGTTGAAGCTAA-TTCT i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87851371 455 - 158406734 AAA-------------------------------------------CTTGAGCGTTAACAATTTCCTCTGAAGACATGTTTGAGCAAACCAGCTCTAAGTGCATTTATAAAGGAAAC--------ATCTCTTCAAAAAAAACACTTACCAGCAAAGCAAAAATATTCTGGCCCTTTTCAAGCCAGAGTCACTGTGGGGCACCGGCTGTCT-TTGCAAGGCTGAGCCACCTTAGGGCACTGCTGTCATCAGGAGGCATTTGCAGCTGTCTACGGGAAGGATTT---------------TGAATAT-------------------------CAGT---------------------TAGTGTCTAATATATGC------TGAaatt--atcatagcaattctgacagcaattatctcaccctcatatagagtatgaaatcaaggcttaggggtaaagcccttggataccatacctgagaccacacagccggt-aagtgactgcaaatccaggatGTCCTAGG----------------------ATGCAGTGTC-----TGAGCACAACCCTCTGGGTCAGTAAACCCAGCATTGAAGCTAA-TTCT i calJac3.chr6 C 0 C 0 s canFam3.chr19 50615020 569 + 53741614 aaaggcagacactccaccactgagccacccaggcgtcccCAGGTTTCTTCATCTTTAACGGTTTTCTCCAAAGACATGTTTGAGCAAACCAGCACCAAATGCATTTATGGGGGAAACataaaaaaattttttaaaaaaaatttCTCACTTGCAACGTAAAAATAGTCTGAATCATTGCAAGCCAGAGATGGCCT-GGGCCTGGGCTACCTGTCTCAAGG------------------TTGCCGCTGTGA----GCGTTTGCAGCGGTCTGTAGGAAGAGTCTCAGTGAAAGTCCAAATGACTATCTTCTTTCTTCTGACCTTAGTGAGGCAGTCGTTAGCATCGTCATTATCACTAGGGCCCAGCACGTGGCAGGAGTGTCACATCCTCGTAGCAGTTC---------TCATCTCACCTGAGTACAGG---TGACATCGAGGCTTAGAATGAAAGCTGTTAGGTGCCGCGTCTGAGCCCACGTAGCCAGT-AAATGACGACACGTGTAAGATGACATAGGACGGGGACCCACAGCCTCTTCTATGCAGGATCCTCGATgagcacaggcctctgggtcagtagccccagctttaaagccaagttct i canFam3.chr19 I 167 C 0 e mm10.chr2 49702498 10 + 182113224 I a score=1502424.000000 s hg38.chr2_GL582966v2_alt 18576 462 + 96131 gctattgacccat-----tctcttgtttacctctcccctctgagccccagtcttctctcccac--agagagatatataataatgcctactttcaagaa-tatt----gggaggattatatgagttgcttcagtttttacctagcacaagggctggcaTGAGTCCAGGT-AAAAAAGTCCGTGACTGATGGCAGGCTATCGGTGATTGCAAGTTCTGCTTTTCCTTCGTCTTAAATAATCTCACAGTATTGCGGCTTGAAAAGGTCATAGTAGTAGATGGGACTAGACTGAATATAATGCACTGTAAGGGA----------CAGCACTGTCATATAAGGGAGAGGATTAAATAAAGTAGAATTAGAATTACATTTTGGGAATGAACAAAT------AAAAAATGCTGCAGGTAATTTGGGCTTCCAGGAAGTAAAAA-GTAATATAAATTATGTTTTCAAATGAAATAGGTCGGTCTACATACTTTTATCAGA s panTro4.chr2B 153140004 462 + 247518478 gctattgacccat-----tctcttgtttacctctcccctctgagccccagtattctctcccac--agagagagatataataatgcctactttcaagaa-tatt----gggaggattatatgagttacttcagtttttacctagcacaagggctggcaTGAGTCCAGGT-AAAAAAGTCCGTGACCGATGGCAGGCTATCGGTGATTGCAAGTTCTGCTTTTCCTTCGTCTTAAATAATCTCACAGTATTGCGGCTTGAAAAGGTCATAGTAGTAGATGGGACTAGACTGAATATAATGCACTGTAAGGGA----------CAGCACTGTCATATAAGGGAGAGGATTAAATAAAGTAGAATTAGAATTACATTTTGGGAATGAACAAAT------AAAAAATGCTGCAGGTAATTTGGGCTTCCAGGAAATAAAAA-GTAATGTAAATCATGTTTTCAAATGAAATAGGTCGGTCTACATTCTTTTATCAGA i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38343022 430 + 135000294 gctattgactcat-----tctcttgtttacctctcccctctgaaccccagtcttgtctcccac--ggagagagatataataatgcctactttcaagaa-tatt----gggaggattgtatgagttgcttcagtttttacctagcacaagggctggcaTGAGTCCTG-----------CCGTGACCGATAGCAG----------------------GCTTTTCCTTCGTCTTAAATAATCTCACAGTATTTCGGCTTGAACAGGTCATAGTAGTAGATGGGATTAGACTGAATGTAATGTACTGTAAGGGA----------CAGCACTGTCATATAAGGGAGAGTATTAAATAAAGTAGAATTAGAATTACATTTTGAGAATGAACAAAT------AAAAAATGCTGCAGGTAATTTGGGCTTCCAGGAAATAAAAA-GTAGTGTAAATTACGTTTTCAAATGGAATAGGTTGGTCTACATTCTTTTATCAGA i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82294070 462 - 85365473 gctattgacccat-----tctcttgtttacctctcccctctgagccccagtcttctctcccac--agagagagatataataatgcctaccttcaagaa-tatt----gggaggattatatgagttgcttcagtttttacctagcacaagggctggcaTGAGTCCAGGT-AAAAAAGTCCATGACCGATGGCAGGCTATCGGTGATTTCAAGTTCTGCTTTTCCTTCGTCTTAAATAATCTCACAGTATTGCGGCTTGAAAAGGTCATTGTAGTAGATGGGACTAGACTGAATGTAATGCACTGTAAGGGA----------CAGCACTGTCATATAAGGGAGAGGATTAAATAAAGTAGAATTAGAATTACATTTTGGGAATGAACAAAT------AAAAAATGCTGCAGGTAATTTGGGCTTCCAGGAAATAAAAA-GTAATGTAAATTATATTTTCAAATGAAACAGGTCGGTCTACATTCTTTTATCAGA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11907385 463 + 106825570 GCTGTTGACCCAT-----TCTCTTGTTTACCTCTcccctctaagcctcagtcttctctcttatagagagagagatataataatgccta-tttcaagaa-tatt----gggaggattatat-agttgcttcagttttaacctagcacaagggctggcaTGAGTCCAGGTAAAAAAAGTTCATGACCGATGGCCAGCTATCGGTGATTGCAAGTTCTGCTTTTCTTTCGTCTTAAATAATCTCACAGTATTCAGCCTTGAAAAGGTCATAGTAGTAGATGGGACTAGACTGAATGTAATGCACTGTAACGGA----------CAGCACTGTCATATAAGGGAGAGGATTAAATAAAGCAGAATTAGAATTACATTTTGGGAATGAACAAAT------AAAAATTACTGCAGATAATTTGGGCTTCCAGGAATTAAAAA-GTGATGTAAATTATGTTTTCAAATGAAATAGGTCAGTCTACATTCTTTTATCAGA i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37611640 463 + 132586672 gctgttgacccat-----tctcttgtttacctctcccctctaagcctcagtcttctctctcatagagagagagatataataatgccta-tttcaagaa-tatt----gggaggattatat-agttgcttcagttttaacctagcacaagggctggcaTGAGTCCAGGTAAAAAAAGTTCATGACCGATGGCCAGCTATCGGTGATTGCAAGTTCTGCTTTTCTTTCGTCTTAAATAATCTCACAGTATTCAGCCTTGAAAAGGTCATAGTAGTAGATGGGACTAGACTGAATGTAATGCACTGTAACGGA----------CAGCACTGTCATATAAGGGAGAGGATTAAATAAAGTAGAATTAGAATTACATTTTGGGAATGAACAAAT------AAAAAATACTGCAGATAATTTGGGCTTCCAGGAATTAAAAA-GTAATGTAAATTATGTTTTCAAATGAAATAGGTCGGTCTACATTCTTTTATCAGA i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11268580 464 + 104110932 GCTGTTGACCCAT-----TCTCTTGTTTACCtctcccctctgagcctcagtcttctctctcatagagagagagatataatAATGCCTATTTTCAAGAA-TATT----GGGAGGATTATATGAGTTGCTTCAGTTTTTACCTAGCACAAGGGCTGGCATGAGTCCAGGT-AAAAAAGTCCATGACCGATGGCCGGCTATCGGTGATTGCAAGttctgcttttcctttgtcttaaatAATCTCACAGTATTGAGCCTTGAAAAGTTCATGGTAGTAGATGGGACTAGACTGAATGTAATGCACTGTAACGGA----------CAGCACTGTCATATAAGGGAGAGGATTAAATAAAGTAGAATTAGAATTACATTTTgggaatgaacaaat------aaaaaatactgcaGATAATTTGGGCTTccaggaaataaaaa-gtaatgtaaattatgttttcaaatgaAATAGTTCGGTCTACATTCTTTTATCAGA i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34364805 464 + 128595539 GCTGTTGACCCAT-----TCTCTTGTttacctctcccctctgagcctcagtcttctctctcatagagagagagatataataatgcctattttcaagaa-tatt----gggaggattatatgaattGCTTCAGTTTTTACCTAGCACAAGGGCTGGCATGAGTCCAGGT-AAAAAAGTCCATGACCGATGGCCGGCTATCGGTGATTGCAAGTTCTGCTTTTCCTTTGTCTTAAATAATCTCACAGTATTGAGCCTTGAAAAGGTCATAGTAGTAGATGGGACTAGACTGAATGTAATGCACTGTAACGGA----------CAGCACTGTCATATAACGGAGAGGATTAAATAAAGTAGAATTAGAATTACATTTTGGGAATGAACAAAT------AAAAAATACTGCAGATAATTTGGGCTTCCAGGAAATAAAAA-GTAATGTAAATTATGTTTTCAAATGAAATAGTTCGGTCTACATTCTTTTATCAGA i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87851826 434 - 158406734 GTGATTGACCCAT-----TTTCTTGTttacttct---ctctgagcctcagtcttctctcccatagagagagagaga-aataatgcctactttcaagac-tatt----gggaggattatatgagttgcttcagtttttacctagctcaagggctggcatg----------------------------tagcaggctatcagtgattgcaagttcCGCTTTTCCTTCATCTTAAGTAATCTCACACTATTGAGGCTTGAAAAGGCCATAGTAGTGGATGGGACTAGACTGAATGTAATGCACTGTAAGGGA----------CAGCACTGTCATATAAGGGGGAGGATTAAATAAAGTATAATTGGAATTGAATTTTTGGAATGAACAAAT-----AAAAAAATACTGCAGATAATTTGGGCTTCCAGGAAATAAAAT-GTAATGTAAATTATATTTTCAAATGAAATAAGTTGGTCTACGTTCTTTTATCAGA i calJac3.chr6 C 0 C 0 s mm10.chr2 49702508 375 + 182113224 GCCACTGATCCAC-----TCTCTC-CTTACTTCT---CTCTGAGCCTCATATCTCTCTACCGTAGAGATGAAG---------TGGCTCCTTCCGAGGA-CTTCTGGGAGGAGGATGATATGAGTTGCC-----------------CAAGGGCTGGTAC----------------------------AGAGGAGGCTATCACTGACTTCAAG------------CTCGCCTTAAATACTCTGGCAGTATTGAGGGTTGGAAAG------ATAGTGGGTAAGACTAGACTAGAAA----------GAAGGAG----------CAGCGTTGCAATATAAAAGACAGT-TTGAATGAAACAG-----------CATTTCACGACTGGAACTATAGGGTAAAGAAATACTATAGGAAATTTGGGATTCCAGGAGATAAAAT-GTAATATCAAATATGTTTCTAGGTGAAATAG-TTGGTCTGC-TTCTTGTACCAGA i mm10.chr2 I 10 I 13 s canFam3.chr19 50615589 438 + 53741614 gctactgatccattcccctctcttgtttacttgt---cttcgagcctctgcc--ctcgtctgt--agggagaactagag---cgcctacctctgagaattgtt----gggaggatta-gtgagTTGCCTCAGTTTTGACTTTGCATAGAGGCAGGC------------------------CGGCAGGGAACAGGTGTTGAGTGGTTGCAGGTTTTCCTTTGCCTCCATCTTCAACAGTGT-ACAGTG--------TGGGAAAGGCACAG-AATggacgggactgcacagaatggaatggaatgtgtgggataggactgggtaggactgggacagaaggggccggaccgagccaggTAGACTTAGAAGTTAGTTTCTGGAATGAGAGACT-----AAAGAAAGGCTGATGCTAATTTGGGATTCCAGGGAATAAAAATAAAATGTCAATTCTCTTTTCAActggaataggttggtctgccatgttttatcaga i canFam3.chr19 C 0 C 0 a score=170283.000000 s hg38.chr2_GL582966v2_alt 19038 48 + 96131 GTCATctagattctgctctctgtgacagcagggactgagtttgtcaca s panTro4.chr2B 153140466 48 + 247518478 GTCATctagattctgctctctgtgacagcagggactgagtttgtcaca i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38343452 48 + 135000294 GTAATctagattctgctctctgtgacagcagggactgagtttgtccca i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82294532 48 - 85365473 GTCATctagattctgctctctgtgacagcagggactgagtttgtcaca i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11907848 48 + 106825570 GTCATctagattctgctctctgtgacagcagggactgagtttgtcaca i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37612103 48 + 132586672 GTCATctagattctgctctctgtgacagcagggactgagtttgtcaca i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11269044 48 + 104110932 GTCATCTAGATTCTGCTCTCTGTGACAGCAGGGACTGAGTTTGTCACA i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34365269 48 + 128595539 GTCATctagattctgctctctgtgacagcagggactgagtttgtcaca i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87852260 48 - 158406734 GTCATTtagattctgctctctgtgacagcagggacccagtttgtcaca i calJac3.chr6 C 0 C 0 s canFam3.chr19 50616027 47 + 53741614 gtcctctgcatactg-gctgcgtgagggcagggacctggtttatcatc i canFam3.chr19 C 0 C 0 e mm10.chr2 49702883 13 + 182113224 I a score=1507184.000000 s hg38.chr2_GL582966v2_alt 19086 397 + 96131 gacattagtt-tctcatcaacca--ctgcacaactag--ttcacagtaggtggtcaataaataaatgcttatcaaatgaatgaaCAGATGAATCTAAAGCTTATTGTGTAAGGTTAC----------------TTGGAAA----GTTAGGGCAGTTGCTGAACATTGATGCCATTACGTCCAGAAgtttggttgggtttggatctggtttgctttCCAA-ACTATTATTGGAAATGTGTGA-GGTTTCGTTC-------------------------CTTTCCCTTTATCCCCAAGTTAGTTAATGGATTATTTAAGGATGCTGAGCTATTCTATGGGGCCAATACCTGCTGTATTGTTAAATATACTCATTGAACCCAATTATACAGCAGACACAAGACTGAACATCGGATTAGACATGGTATGTGATAGCTAATGAGATTAAGCACT s panTro4.chr2B 153140514 399 + 247518478 gacattagtt-tctcatcaaccactctgcacaactag--ttcacagtaggtggtcaataaataaatgcttatcaaatgaatgaaCAGATGAATCTAAAGCTTATTGTGTAAGGTTAC----------------TTGGAAA----GTTAGGGCAGTTGCTGAACATTGATGCCATTACGTCCAGAAGTTTGGTTGGGTTTGGATCTGGTTTGCTTTCCAA-ACTATTATTGGAAATGTGTGA-GGTTTCGTTC-------------------------CTTTACCTTTATCCCCAAGTTAGTTAATGGATTATTTAAGGATGCTGAGCTATTCTATGGGGCCAATACCTGCTGTATTGTTAAATATACTCATTGAACCCAATTATACAGCAGACACAAGACTGAACATCGGATTAGACATGGTATGTGATAGCTAATGAGATTAAGCACT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38343500 399 + 135000294 gacattagtt-tctcatcaaccactctgcacaactag--ttcacagtaggtggtcaataaataaatgcttatcaaatgaatgaaCAGATGAATCTAAGGCTTATTGTGTAAGGTTAC----------------TTGGAAA----GTTAGGGCAGTTGCTGAACATTGATGCCATTATGTCCAGAAGTTTGGTTGGGTTTGGATCTGATTTGCTTTCCAA-CCTGTTATTGGAAATGTGTGA-GGTTTCATTC-------------------------CTTTCCCTTTATCCCCAAGTTAGTTAATGGATTATTTAAGGATGCTGAGCTATTCTATGGGGCCAATACCTGCTGTATTGTTAAATATACTCATTGAACCCAATTATACAGCAGACACAAGACTGAACATCGGATTAGACATGGTATGTGATAGCTAATGAGATTAAGCACT i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82294580 399 - 85365473 gacattagtt-tctcatcaaccactctgcacaactag--ttcacagtaggtggtcaataaataaacgcttatcaaatgaatgaaCAGATGAATCAAAAGCTTATTGTGTAAGGTTAC----------------TTGGAAA----GTTAGGGCAGTTGCTGAACATTGATGCCATTACGTCCAGAAGTTTGGTTGGGTTTGGATCTGGTTTGCTTTCCAA-TCTATTATTGGAAATGTGTGA-GGTTTCATTC-------------------------CTTTCCCTTTATCCCCAAGTTAGTTAATGGATTATTTAAGGATGCTGAGCTATTCTATGGGGCCAATACCTGCTGTATTGTTAAATATACTCATTGAACCCAATTATACAGCAGACACAAGACTGAACATTGGATTAGACATGGTATGTGATAGCTAATGAGATTAAGCACT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11907896 410 + 106825570 gacattagtt-tctcatcaatgactctgcacaactag--ttcacagtaggtggtcaataaataaatgtttatcaaatgaatgaaCAGATGAATCTAAAGCTTATTGTGTAAGGTTATCTAAAGCTTATTTGTGTTGGAAA----GTTAAGGCAGTTGCTGAACTTTGATGCCATTACATCCAGAAGTTTGGTTGGGTTTGGATCTGGTTTGCTTTCCAA-TCTATTATTGGAAATGTGTGA-GGTTTCGTTC-------------------------CTTTCCCTTTATCCCCAAGTTAGTTAATGGATTATTTAAGGATGCTGAA-----CTACAGGGCCAATACCTGCTGTATTGTTAAATATACTCATTGAACCCAATTATACAGCAGACACAAGACTGAACATCAGATTAGACATGGTATGTGGTAGCTAATGAGATTAAGCACT i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37612151 410 + 132586672 gacattagtt-tctcatcaatgactctgcacaactag--ttcacagtaggtggtcaataaataaatgtttatcaaatgaatgaaCAGATGAATCTAAAGCTTATTGTGTAAGGTTATCTAAAGCTTATTTGTGTTGGAAA----GTTAAGGCAGTTGCTGAACTTTGATGCCATTACATCCAGAAgtttggttgggtttggatctggtttgctttCCAA-TCTATTATTGGAAATGTGTGA-GGTTTCGTTC-------------------------CTTTCCCTTTATCCCCAAGTTAGTTAATGGATTATTTAAGGATGCTGAA-----CTACAGGGCCAATACCTGCTGTATTGTTAAATATACTCATTGAACCCAATTATACAGCAGACACAAGACTGAACATCAGATTAGACATGGTATGTGGTAGCTAATGAGATTAAGCACT i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11269092 415 + 104110932 GATGTTAGTT-TCTCATCAACCACTCTGCACAAGTAG--TTCCCAGTAGGTggtcaaaaaataaatgcttatcaaATGAATGAACATATGAATCTAAAGCTTGTTGTGTAAGGTTATCTAAAGCTTATTTATGTTGGAAA----ATTAAGGCAGTTGCTGAACTTTGATGCCATTACATCCAGAAGTTTGGTTGGGTTTGGATCTGGTTTGCTTTCCAA-TCTATTATTGGAAATGTGTGA-GGTTTCGTTC-------------------------CTTTCCCTTTATCCCCAAGTTAGTTAATGGATTATTTAAGGATGCTGAACTATTCTACAGGGCCAATACCTGCTGTATTGTTAAATATACTCATTGAACCCAATTATACAGCAGACACAAGACTGAACATCAGATTAGACATGGTATGTGGTAGCTAATGAGATTAAGCACT i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34365317 415 + 128595539 gacattagtt-tctcatcaaccactctgcacaactag--ttcacagtaggtggtcaataaataaatgcttatcaaatgaatgaaCAGATGAATCTAAAGCTTGTTGTGTAAGGTTATCTAAAGCTTATTTATGTTGGAAA----ATTAAGGCAGTTGCTGAACTTTGATGCCATTACATCCAGAAgtttggttgggttttgatctggtttgctttCCAA-TCTGTTATTGGAAATGTGTGA-GGTTTCGTTC-------------------------CTTTCCCTTTATCCCCAAGTTAGTTAATGGATTATTTAAGGATGCTGAACTATTCTACAGGGCCAATACCTGCTGTATTGTTAAATATACTCATTGAACCCAATTATACAGCAGACACAAGACTGAACATCAGATTAGACATGGTATGTGGTAGCTAATGAGATTAAGCACT i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87852308 398 - 158406734 ggcattagtt-tctcatcaaccactctgcataactag--ttcacagtaggtggtcaataaataaatgcgtatcaaatgaatgaaCAGGTGAATCTAAAGC-TATTGCATAAAATTAC----------------TTGGAAA----ATTAAGGCAGTTGCGGAACTTTGACACCATTGCATCCAAAAGTTTGGCTGGGTTTGGATCTGGGTTGCTTTCCAA-TCTATTATTGGAAATGTGTGA-GGTTTTGTTT-------------------------CTTTCCCTTTATCCTCAAGTTAGTTAATGGATTATTTAAGGATGCTGAACTATTCTACAGGGCCAATACCTGTTGTATTGTTAAATATACTCATTGAACCCAATTATACAGCAGACACAAGACTGCACATCGGATTAGACACAGTATGTGATAGCTAATGAGATTAAGCACT i calJac3.chr6 C 0 C 0 s mm10.chr2 49702896 403 + 182113224 GACGTCAGCT-TTCCAGCATGGGACGTGTGCA-----------------GTGGTCAGTAGGTGCACGCTTATTGAACAGTGAAGCAAGCGAG-CTCAGGTTCATGGTGAAGGATCGT----------------CAGGGAGCTGTGTCAGGGAGGTGTC----CCTTG-----GTCAACCCTAGAAGTCGACCTGGGTTT-GATCTAGTTTGTTTTCTAG-TCAGTAGTCTGATGTATATGATAGTTtctctctctctctctctctctctctctctctctctctctctctctctGTCCATGTTAATTGATTCTTTAGGGATAGTGGATTTGTCCATGGGCTTTCTGTCTGCTTTACTGTTAACTATATGCACTGAACCCAACTATACAGCAGACATGGATCTGATCATCAGATTAGACATGATATCCCAGAGTGAATAGGATTAAATACT i mm10.chr2 I 13 I 487 s canFam3.chr19 50616074 403 + 53741614 agtgtcacttgtctcaacaagcatccagcacaaccggcacacacagtagagggttgttaaataaatgcttatcgaatggatgcatGGATGCGTGAAGTGCTTATTGTGTAGGATTCC----------------TTAGAAC----ATTAGGGCAGGTGCTGACCTGTGACACCATTACGTCCAGAAGTTTGGTTAGCTTTAGGTCTGGTGTGTTTTCCAGCCCTATAATTGGAAAGGTGTGA-GGTTTTGTTC-------------------------CTCTCTCCCTGTCCCTGAGTTATTTAATGGATTCTTCAAGGACATCTAACTTCTCTATGGGGCCCATACCTGCTTTATTGTTAAATATACGCAGTGAACCCAATTACACAGCAGACACGAGTCTGAACATCGGATTAGACATGGTATCTGATAGCTAATGAGATTAAGCACT i canFam3.chr19 C 0 C 0 a score=687010.000000 s hg38.chr2_GL582966v2_alt 19483 192 + 96131 TTGAACTCAGAAAAGACTGCCGGGCACATCCCAAATTCATTGTAATGAGTGTTCATTATATTCTTACTGCAGAGGTGGCCAAACCTTAGGGCAGCATGAGGTTCCTCCGTTATTCCTTTGTGGTTCTTTCAAGGACGTGAAGAGAGTACACGT---TTGTT---CTGCTTGACTGTACTGATGTTCTGAATAACACAG s panTro4.chr2B 153140913 195 + 247518478 TTGAACTCAGAAAAGACTGCCGGGCACATCCCAAATTCATTGTAATGAGTGTTCATTATATTCTTACTGCAGAGGTGGCTAAACCTTAGGGCAGCATGAGGTTCCTCCGTTATTCCTTTGTGGTTCTTTCAAGGACGTGAAGAGAGTACACGTTTGTTGTT---CTGCTTGACTGTACTGATGTTCTGAATAACACAA i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38343899 195 + 135000294 TTGAACTCAGAAAAGACTGCCGGGCACATCCCAAATTCATTGTAATGAGTGTTCATTATGTTCTTACTGCAGAGGTGGCCGAACCTTAGGGCAGCATGGAGTTCCTCAGTTATTCCTTTGTGGTTCTTTCAAGGACGTGAAGAGAGTACACGTTTGTTGTT---CTACTTGACTCTACTGATGCTCTGAATAACACAA i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82294979 195 - 85365473 TTGAACTCAGAAAAGACTACCGGGCACATCCCAAATTCATTGTAATGAGTGTTCATTACATTCTTACTGCAGAGGTGGCCAAACCTTAGGACAGCATGAGGTTCCTCAGTTATTCCTTTGTGGTTCTTTCAAGGACGTGAAGAGAGTACACATTTGTCGTT---CTGCTTGACTGTACTGATGTTCTGAATAACACAA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11908306 195 + 106825570 TTGAACTCAGAAAAGACTGCCGGGCACATCCTAAATTCATTGTAATGAGTGTTCATTATATTCTTACTGCAGAGGTGGGCAAACCTTAGGGCAGCATGAGGTTCCTCAGTGATTCCTTTGTGGTTCTTTCAAGGACGTGAAGCGAGTACACGTTTGTTATT---CTGCTTGACTGTACTGATGCTCTGAATAACACAA i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37612561 195 + 132586672 TTGAACTCAGAAAAGACTGCCAGGCACATCCTAAATTCATTGTAATGAGTGTTCATTATATTCTTACTGCAGAGGTGGGCAAACCTTAGGGCAGCATGAGGTTCCTCAGTGATTCCTTTGTGGTTCTTTCAAGGACGTGAAGCGAGTACACGTTTGTTGTT---CTGCTTGACTGTACTGATGCTCTGAATAACACAA i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11269507 195 + 104110932 TTGAACTCAGAAAAGACTGCCGGGCACATCCTAAATTCATTGTAATGAGTGTTCATTATATTCTTACTGCAGAGGTGGGCAAACCTTAGGGCAGCATGAGGTTCCTCAGTGATTCCTTTGTGGTTCTTTCAAGGACGTGAAGCGAGTACACGTTTGTTGTT---CTGCTTGACTGTACTGATGCTCTGAATAACACAA i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34365732 195 + 128595539 TTGAACTCAGAAAAGACTGCCGGGCACATCCTAAATTCATTGTAATGAGTGTTCATTATATTCTTACTGCAGAGGTGGGCAAACCTTAGGGCAGCATGAGGTTCCTCAGTGATTCCTTTGTGATTCTTTCAAGGACGTGAAGCAAGTACACGTTTGTTGTT---CTGCTTGACTATACTGATGCTCTGAATAACACAA i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87852706 182 - 158406734 TTGAACTCAGAG-----TGCTGGGCACATCGCAAATTCATTGTAATGAGTGTTCATTATATTCTTATTACAGAGGTGGCCAAACCTTAGGGCAGCATGAGGTTCCTCAGTTATTCCTTTGTGGTTCTTTCAAGGATGTGAAGAGAGTACATGTTTGTTATT---CTGCTTGACTGCA--------CTGAATAATACAA i calJac3.chr6 C 0 I 310 s canFam3.chr19 50616477 195 + 53741614 TTGAACTCCGAAAAGACTGCCGGGCACATCTCAAATTCAGTGTAACGAGTGTTCATTATGCTCTTGTTGCAG-GGTGGCCAAACCTT-GGGCTGCTCAAGGTTCCTTCGTTATTCCTGTGTGGTTCTTTCAAGGACATGCAGAAGGTCCATGGTTGTTGCTAGGCTACTTTACTGTATTGATGCCCTGAGTCAAACA- i canFam3.chr19 C 0 C 0 e mm10.chr2 49703299 487 + 182113224 I a score=391953.000000 s hg38.chr2_GL582966v2_alt 19675 118 + 96131 TGTAGTATGTGTTTCGAAGCAG-----------TTCAATCTGCAGATCCCTGAAGGCACTCTACCAAGAGTCCTGTTAGCATTCTTCAGGATTATAGGTTAGATACTGGAATTTAA--AGGGAAAAATTTA s panTro4.chr2B 153141108 118 + 247518478 TGTAGTATGTGTTTCGAAGCAG-----------TTCAATCTGCAGATCCCTGAAGGCACGCTACCAAGAGTCCTGTTAGCATTCTTCAGGATTATAGGTTAGATACTGGAATTTAA--AGGGAAAAATTTA i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38344094 118 + 135000294 TGTAGTATGTGTTTCGAAGCAG-----------TTAAATCTGCAGATCCCTGAAGGCACTCTACCAGGAGTTGTGTTAGCATTCTTCAGGATTATAGGTTAGATACTGGAATTTAA--AGGGAAAAATTTA i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82295174 118 - 85365473 TGTGGTATGTGTTTCGAAGCAG-----------TTAAATCTGCAGATCCCTGAAGGCACTCTACCAAGAGTCCTGTTAGCATTCTTCAGGATTATAGGTTAGATACTGGAATTTAA--AGGGAAAAATTTA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11908501 118 + 106825570 TGTAGTATTTGTTTCGAAGCAG-----------TTAAATCTGCAGATCCCTGAAAGCACTCTACCAAGAGTCCTGCTAGCATTCTTCAGGATTATAGGTTAGATACTGGAATTTAA--AGGGAAAAATTTA i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37612756 118 + 132586672 TGTAGTATTTGTTTCGAAGCAG-----------TTAAATCTGCAGATCCCTGAAAGCACTCTACCAAGAGTCCTGCTAGCATTCTTCAGGATTATAGGTTAGATACTGGAATTTAA--AGGGAAAAATTTA i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11269702 118 + 104110932 TGTAGTATTTGTTTTGAAGCAG-----------TTAAATCTGCAGATCCCTGAAAGCACTCTACCAAGAGTCCTGCTAGCATTCTTCAGGATTATAGGTTAGATACTGGAATTTTA--AGGGAAAATTTTA i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34365927 118 + 128595539 TGTAGTATTTGTTTCGAAGCAG-----------TTAAATCTGCAGATCCCTGAAAGCACTCTACCAAGAGTCCTGCTAGCATTCTTCAGGATTATAGGTTAGATACTGGAATTTAA--AGTGAAAAATTTA i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87853198 117 - 158406734 TGTAATAGGTGTTTTGAAGCAG-----------TTAAATCTGCAGACCCCTGAAGACACTCTACCAAGAGTCCTGTTAGCATTCTTCAGGACTCAAGGTTAGA-ATTAGAATTTAA--AGGGAAAAATTGA i calJac3.chr6 I 310 C 0 s canFam3.chr19 50616672 123 + 53741614 -ATAGTGTGTCCTTTGAAGCAGTAGACACATGATAGAGTCTACGAGTGCCTGAGGGCAGCCTCCCAG-------GTCAGCACTCTTTAGGATTCTAGATTAGGTACTGGAATTAAAGGGGGGGAAAGTGTA i canFam3.chr19 C 0 C 0 e mm10.chr2 49703299 487 + 182113224 I a score=30933.000000 s hg38.chr2_GL582966v2_alt 19793 13 + 96131 CCATGTCTATTTC s panTro4.chr2B 153141226 13 + 247518478 CCATGTCTATTTC i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38344212 13 + 135000294 CCATGTCTATTTC i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82295292 7 - 85365473 CC------ATTTC i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11908619 13 + 106825570 CCATGTCTATTTC i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37612874 13 + 132586672 CCATGTCTATTTC i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11269820 13 + 104110932 CCatgtctatttc i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34366045 13 + 128595539 CCATGTCTATTTC i chlSab2.chr10 C 0 C 0 s canFam3.chr19 50616795 13 + 53741614 CACTGTCTGTTTC i canFam3.chr19 C 0 I 65 e calJac3.chr6 87853315 0 - 158406734 C e mm10.chr2 49703299 487 + 182113224 I a score=589484.000000 s hg38.chr2_GL582966v2_alt 19806 257 + 96131 TA--TTtttgttttttaaattatacttttaagttctgggatacatgggcagaacatgcaggtttgttatataggtatacatgtgctatggtggtttgctgcacccatcaacccgtcacctacattaggtatttctcctaatgctatccctcccctagccccccaccccccgacaggccccgatatgtga------------tccatccatgtgttctcattgtttaactcccacttatgagtgagaacatgcggtgtttggttttctgttc s panTro4.chr2B 153141239 257 + 247518478 TA--TTtttgttttttaaattatacttttaagttctgggatacatgggcagaacatgcaggtttgttacataggtatacatgtgccatggtggtttgctgcacccatcaacccgtcacctacattaggtatttctcctaatgctatccctcccctagccccccacccgccgacaggccccagtgtatga------------tccatccatgtgttctcattgtttaactcccacttatgagtgagaacatgcggtgtttggttttctgttc i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38344225 257 + 135000294 TA--TTtttgttttttaaattatacttttaagttctgggatacatgggcagaacatgcaggtttgttacataggtatacatgtgccatggtggtttgctgcacccatcaacccgtcacctacattaggtatttctcctaatgctatccctcccctagccccccaccccccgacaggccccagtgtgtga------------tgcatccatgtgttctcattgtttaactcccacttatgagtgagaacatgcggtgtttggttttctgttc i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82295299 257 - 85365473 TA--TTtttgttttttaaattatacttttaagttctgggatacatgtgcagaatgtgcaggtttgttacataggtatacatgtgccatggtggtttgctgcacccatcaacccgtcacctacattaggtatttctcctaatgccatccctcccctaggcccccaccctccgataggccccaatgtgtga------------tgcatccatgtgttctcattgttcagctcccacttatgagtgagaacatgcggtgtttggttttctgttc i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11908632 268 + 106825570 TA---ttttttttttttaattatacttttaagttctgggatgcatgggcagaacgtacaggtttgttacataggaatacacgtaccatggtgatttgctgcacccatcaacaagtcacctacattaggtatttccctgaatgctatccctcccctagacccccaccccccgacaagccccagtgtttgatgttcccctccctgtgtccatgtgttctcattgttcaactccgacttatgagtgagaacatgcagtgtttggttttctgttc i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37612887 267 + 132586672 TA----ttttttttttaaattatacttttaagttctgggatacatgggcagaacgtacaggtttgttacataggaatacatgtaccatggtggtttgctgcacccatcaacaagtcacctacattaggtatttccctgaatgctatccctcccctagacccccaccccccgacaagccccagtgtttgatgttcccctccctgtgtccatgtgttctcattgttcaactccgacttatgagtgagaacatgcagtgtttggttttctgttc i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11269833 267 + 104110932 ta----ttttttttttaaattatacttttaagttctgggatacatgggcagaacgtacaggtttgttacataggaatacatgtgccatggtggtttgctgcacccatcaacaagtcacctacattaagtatttccccgaatgctatccctcccctagacccccaccccccaacaagccccagtgtgtgatgttcccctccctgtgtccatgtgttctcattgttcaactctgacttatgagtgagaacatgcagtgtttggttttctgttc i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34366058 271 + 128595539 TTTTTttttttttttttaattatacttttaagttctgggatacacaggcagaacgtacaggtttgttacataggaatacatgtgccatggtggtttgctgcacccatcaacaagtcacctacattaggtatttccccgaatgctatccctccgctagacccccaccccctgacaagccccagtgtttgatattcccctccctgtgtccatgtgttctcattgttcaactccgacttatgagtgagaacatgcagtgtttggttttctgttc i chlSab2.chr10 C 0 C 0 e canFam3.chr19 50616808 65 + 53741614 I e calJac3.chr6 87853315 0 - 158406734 C e mm10.chr2 49703299 487 + 182113224 I a score=116681.000000 s hg38.chr2_GL582966v2_alt 20063 43 + 96131 ctgtgttagtttactgagaatgatggtttccagcATTCTGGTT s panTro4.chr2B 153141496 43 + 247518478 ctgtgttagtttactgagaatgatggtttccagcATTCTGGTT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38344482 43 + 135000294 ctgtgttagtttgctgagaatgatggtttccagcATTCTGGTT i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82295556 43 - 85365473 ctgcgttagtttgctgagaatgatggtttccagAATTCTGGTT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11908900 43 + 106825570 ctgtgttagtttgctgagaatgatggtttccagcATTCTGGTT i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37613154 43 + 132586672 ctgtgttagtttgctgagaatgatggtttccagcATTCTGGTT i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11270100 43 + 104110932 ctgtgttagtttgctgaggatgatggtttccagcattcTGGTT i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34366329 43 + 128595539 ctgtgttagtttgctgagaatgatggtttccagcATTCTGGTT i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87853315 34 - 158406734 CTGTGTTGATTT-CTTGGACTGAT--------ATATTCTGGCT i calJac3.chr6 C 0 C 0 e canFam3.chr19 50616808 65 + 53741614 I e mm10.chr2 49703299 487 + 182113224 I a score=94521.000000 s hg38.chr2_GL582966v2_alt 20106 29 + 96131 CTTCCATTCAGTCGGGGTTGTTTCCTTTA s panTro4.chr2B 153141539 29 + 247518478 CTTCCATTCAGTCGGGGTTGTTTCCTTTA i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38344525 29 + 135000294 CTTCCATTCAGTCGGGGTTGTTTCCTTTA i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82295599 29 - 85365473 CTTCCATTCAGTCGGGATTGTTTCCTTTA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11908943 29 + 106825570 CTTCCGTTCAGTCGGGGTTGTTTCCTTTG i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37613197 29 + 132586672 CTTCCGTTCAGTCGGGGTTGTTTCCTTTG i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11270143 29 + 104110932 CTTCCATTCAGTCGGGGTTGTTTCCTTTG i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34366372 29 + 128595539 CTTCCATTCAGTCGGGGTTGTTTCCTTTG i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87853349 29 - 158406734 CTTCCATTCAGTTGGGCTTGTTTAGTTTA i calJac3.chr6 C 0 C 0 s mm10.chr2 49703786 28 + 182113224 CTCTCATTTGATCAAGCTT-TCCCCTTTA i mm10.chr2 I 487 C 0 e canFam3.chr19 50616808 65 + 53741614 I a score=3111774.000000 s hg38.chr2_GL582966v2_alt 20135 901 + 96131 GTTTCCTGAATGCCCAGCATCGTGCCATTAAAGAAGTAAGTGCTGTCTCCTGTGTTCTCAAAGAGCTTTTAATCTAGCTGAGGAGGCAGCACTTGAATTACGAGG--CA------------GTAGAAAGTCAAAAAGCC----------------------AGACTCAAATTAGAGCACTTTT-ATTGATT----CTTTTCTTCTGGCTTCCAGAATTCTATTTTGTAGTCTTTAATTACTCTTC------TC-----AACTACTTTTACAGCGCTATTTGAAAAAGATATTTATG--TTTTAGAAGTGTGAACTCAAATCACCCAATTGTGTTGGAAGCCTA-TTTAATGTACCTTGATTTGGGGTGGTAATAAAGGGAAAGAGGCCCTCTGAGGGGGCAGACCAATGTGGTTAG-GAAGACCTGAATCGGCACATCTTTGGCACTGGGAGTTTTGATTGATCCAGCATGAATAATTTG-AGGCTTTGTTTGTATGTTGAATGTGGAAGGAGAATTGATATCTTAGGGAAAGTAATAATCTTTTTTCTTTTCCTGATGTGCACT-------TAAAAAAGTCGTGTCATCATTTTAATTGTGTCATCT----GCCAGTTTAGTGGTAGCTAGATTAGGCAGAGCCTGAATAGTGTGCATAT-GAAATTTATGTCACCAGAACATGAGAACACATTACCTACGAGAGT-AGAATGAGCATTTTGGCCAAGGCAGACACTTGGCTACA-CTTTGACATGAAA-GAAAAAAAGGCTTAAATCATTCCTGTTGGGGG--GCCTGTTGCTGAAACACCAGTAGGGTTAATTTTTGCCCTTGGAGGGAAGAAATACTGTGGGTGACATACATTTAACTAGATGCCAAGTCCTTATCCATGTC----ATTTCTGAATGTTTCTCAGGAGACTAGAACTT---TTT--AAAGACACAAAA--------TTTTCATTTctccctcctgccctccctccttc s panTro4.chr2B 153141568 890 + 247518478 GTTTCCTGAATGCCCAGCATCATGCCATTAAAGAAGTAAGTGCTGTCTCCTGTGTTCTCAAAGAGCTTTTAATCTAGCTGAGGAGGCAGCACTTGAATTATGAGG--CA------------GTAGAAAGTCAAAAAGCC----------------------AGACTCAAATTAGAGCACTTTT-ATTGATT----TTTTTCTTCTGGCTTCCAGAATTCTATTTTGTAGTCTTTAATTACTCTTC------TC-----AACTACTTTTACAGCGCTATTTGAAAAAGATATTTATG--TTTTAGAAGTGTGAACTCAAATCACCCAATTGTGTTGGAAGCCTA-TTTAATGTACCTTGATTTGGGGTGGTAATAAAGGGAAAGAGGCCCTCTGAGGGGGCAGACCAATGTGGTTAG-GAAGACCTGAATCAGCACATCTTTGGCACTGGGAGTTTTGATTGATCCAGCATGAATAATTTGAAGGCTTTATTTGTATGTTGAATGTGGAAGGAGAATTGATATCTTAGGGAAAGTAATAATCTTTTTTCTTTTCCTGATGTGCACT-------TAAAAAAGTCGTGTCATCATTTTAATTGTGTCATCT----GCCAGTTTAGTGATAGCTAGATTAGGCAGAGCCTGAATAGTGTGCATAT-GAAATTTATGTCACCAGAACATGAGAACACATTACCTACGAGAGT-AGAATGAGCATTTTGGCCAAGGCAGACACTTGACTACA-CTTTGACATGAAA-GAAAAAAAGGCTTAAATCATT--------------CCTGTTGCTGAAACACCAGTAGGGTTAATTTTTGCCCTTGGAGGGAAGAAATACTGTGGGTGACATACATTTAACTAGATGCCAAGTCCTTATCCATGTC----ATTTCTGAATGTTTCTCAGGAGACTAGAACTT---TTT--AAAGACACAAAA--------TTTTCATTTCTCCCTCCTGCCCTCCCTCCTTC i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38344554 903 + 135000294 GTTTCCTGAATGCCCAGCATCGTGCCATTaaagaagtaagcactgtctcctgtgttctcaaagagcttttaatctagctgaggaggcagaACTTGAACTACCAAG--CA------------GTAGAAAGTCAAAAAGCC----------------------AGACTCAAATTAGAGCAGTTTT-ATTGATT----TTTTTCTTCTGGCTTCCAGAATTCCATTTTGTAGTCTTTAATTACTCTTC------TC-----AACTACTTTTACAATGCTATTTGAAAAAGATATTTATG--TTTTAGAAGTGTGAACTCTAATCACCCAATTGTGTTGGAAGCCTATTTTAATGTACCTTGATTTGGGGTGGTAATGAAGGGAAAGAGGCCCTCTGAGGGGGCAGACCAATGTGGTTAG-GAAGACCTGAATCAGCACATCTTTGGCACTGGGAGTTTTGATTGATCCAGCATGAATAATTTGAAGGCTTTATTTGTATGTTGAATGTGGAAGGAGAATTGATATCTTAGGGAAAGTAATAATCTTTTTTCTTTTCCTGATATGCACT-------TAAAAAAGTCATGTCATCATTTTAATTGTGTCATCT----GCCAGTTTAGTGGTAGCTAGATTAGGCAGAGCCTGAATAGTGTGCATAT-GAAATTTATGTCATCAGAACATGAAAACACGTTACCTACGAGAGT-AGAATGAGCATTTTGGCCAAGGCAGACACTTGGCTACA-CTTCGACATGAAA-GAAAAAAAGGCTTAAATTATTCCTGTTGGGGG--GCCTATTGCTGAAACACCAATAGAGTTAATTTTTGCCCTTGGAGGGAAGAAATACTGTGAGTGACATACATTTAACTAGATGCCAAGTCCTTATCCACATC----ATTTCTGAATGTTTCTCAGGAGACTAGAACTT---TTT--AAAGACACAAAA--------TTTTCATTTCTCCTTCCTGCCCTCCCTCTTTC i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82295628 887 - 85365473 GTTTCCTGAATGCCCAGCATCGTGCTATTAAAGAAGTAAGCACTGTCCCCTGTGTTCTCAAAGAGCTTTTAATCTAGCTGAGGAGGCAGCACTTGAATTACCAGG--CA------------GTAGAAAGTCAAAAAGCC----------------------AGACTCAAATTAGAGCACTTTTAATTGATT----TTTTTCTTCTGGCTTCCAGAATTCTATTTTGTAGTCTTTAATTACTCTTC------TC-----AACTACTTTTACAGTGCTATTTGAAAAAGATATTTATG--TTTTAGAAGCGTGAACTCAAATCACCCAATTGTGTTGGAAGCCTA-TTTACTGTACCTTGATTTGGGGTGGTAATGAAGGGAAAGAGGCCCTCTGAGGGGGCACACCAATGTGGTTAG-GAAGACCTGAATCAGCACATCTTTGGCACTGGGAGTTTTGATTGATCCAGCATGAATAATTCAAAGGCTTTATTTGTATGTTGAATGTGGAAGGAGAATTGATATCTTAGGGAAAGTAATAATCTTTTTTCTTTTCCTGAT---------------------GTCCTGTCATCATTTTAATTGTGTCATCT----GCCAGTTTAGTGGTAGCTGGA-TAGGCAGAGCCTGAAGAGTGTGCATAT-GAAATTTATGTCACCAGAACATGAGAACACGTTACCTACGAGAGT-AGAATGAGCATTTTGGCCAAGGCAGACACTTGGCTACA-CTTCAACATGAAA-GAAAAAAAGGCTTAAATCATTCCTCTTGGGGG---CCTGTTGCTGAAACACCAATAGGGTTAATTTTTGCCTTTGGAGGGAAGAAATACTGTAGGTGACATACATTTAACTAGATGCCAAGTCCTTATCCATGTC----ATTTCTGAATGTTTCTCAGGAGACTAGAACTT---TTT--AAAGACACGAAA--------TTTTCATTTctccttcctgccctccctccttc i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11908972 902 + 106825570 GTTTCCTGAATGCCCAGCATCGTGCCATTaaagaagtaagtgctgtctcctgcattctcaaagagcttttaatctagttgaggatgcagcacgtgaaTTCCCAGG--CA------------GTAGAAAGTCAAAAAGCC----------------------AGACTCAAATTAGAGCACTTTT-ATTGATT-----TTTTCTTCTGGCTTCCAGAATTCTATTTTGTAGTCTTTAATTACTCTTC------TA-----AACTACTTTTACAGCACTATTTGAAAAAGATATTTATG--TTTTAGAAGTGTGAACTCAAATCCCCCGATTGTGTTGGAAGCCAATTTTAATGTACCTTGATTTGGGGTGGTAATGAAGGGAAAGAGGCCCTCTGAGGGGACAGACCAATGTGGTTAG-GAAGACCTGAATCAGCACATCTTTGGCACCAGGATTTTTGATTGATCCAGCATGAATAATTCAAAGGCTTTATTTGTATGTTGAATGTGGAAGGAGAATTGATATCTTAGGGAAAGTAATATTCTTTCTTCTTTTCCTGATGTGCGCT-------TAAAAAAGTCATGTCATCATTTTAATTGTGTCATCT----GCCAGTTTAGTGGTAGCTAGATTAGGCAGAGCCTGAATAGTGTGCATAT-GAAATGTACGTCACCAGAACATGAGAACATGTTACCTGTGAGAGT-AGAACGAGCATTTTGGCCAAGGCAGATACTTGACTACA-CTTTGACATGAAA-GAAAAAAAGGCTTAAATCATTCCTGTTGGGGG--AGCTACTGCTGAAACACCAATAGGGTTAATTTTTGCTCTTGGAGGGAAGAAATACTGTGGGTGACATACATTTAACTAGATGCCCAGTCCTTATCCATGTC----ATTTCTGAATGTTTCTCAGGTGACTAGAACTT---TTT--AAAGGCACAAGA--------TTTTAATTTCTCCTTCCCACCCTCCTTCCTTC i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37613226 902 + 132586672 GTTTCCTGAATGCCCAGCATTGTGCCATTAAAGAAGTAAGTGCTGTCTCCTGCATTCTCAAAGAGCTTTTAATCTAGTTGAGGATGCAGCACGTGAATTCCCAGG--CA------------GTAGAAAGTCAAAAAGCC----------------------AGACTCAAATTAGAGCACTTTT-ATTGATT-----TTTTCTTCTGGCCTCCAGAATTCTATTTTGTAGTCTTTAATTACTCTTC------TA-----AACTACTTTTACAGCACTATTTGAAAAAGATATTTATG--TTTTAGAAGTGTGAACTCAAATCCCCCGATTGTGTTGGAAGCCAATTTTAATGTACCTTGATTTGGGGTGGTAATGAAGGGAAAGAGGCCCTCTGAGGGGACAGACCAATGTGGTTAG-GAAGACCTGAATCAGCACATCTTTGGCACCAGGATTTTTGATTGATCCAGCATGAATAATTCAAAGGCTTTATTTGTATGTTGAATGTGGAAGGAGAATTGATATCTTAGGGAAAGTAATATTCTTTCTTCTTTTCCTGATGTGCGCT-------TAAAAAAGTCATGTCATCATTTTAATTGTGTCATCT----GCCAGTTTAGTGGTAGCTAGATTAGGCAGAGCCTGAATAGTGTGCATAT-GAAATGTACGTCACCAGAACATGAGAACATGTTACCTGTGAGAGT-AGAATGAGCATTTTGGCCAAGGCAGATACTTGACTACA-CTTTGACATGAAA-GAAAAAAAGGCTTAAATCATTCCTGTTGGGGG--AGCTACTGCTGAAACACCAATAGGGTTAATTTTTGCTCTTGGAGGGAAGAAATACTGTGGGTGACATACATTTAACTAGATGCCCAGTCCTTATCCATGTC----ATTTCTGAATGTTTCTCAGGTGACTAGAACTT---TTT--AAAGGCACAAGA--------TTTTAATTTctccttcccaccctccttccttc i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11270172 898 + 104110932 GTTTCCTGAATGCCCAGCATCGTGCCATTAAAGAAGTAAGTGCTGTCTCCTGCATTCTCAAAGAGCTTTTAATCTAGTTGAGGATGCAGCACGTGAATTCCCAGG--CA------------GTAGAAAGTCAAAAAGCC----------------------AGACTCAAATTAGAgcactttt-attgatt-----ttttcttctggcttccagaattcTATTTTGTAGTCTTTAATTACTCTTC------TA-----AGCTACTTTTACAGCactatttgaaaaagatatttatg--TTTTAGAAGTGTGAACTCAAATCCCCCGATTGTGTTGGAAGCCTA-TTTAATGTACCTTGATTTGGGGTGGTAATGAAGGGAAAGAGGCCCTCTGAGGGGACAGACCAATGTGGTTAG-GAAGACCTGAATCAGCACATCTTTGGCACCAGGATTTTTGATTGATCCAGCATGAATAATTCAAAGGCTTTATTTGTATGTTGAATGTGGAAGGAGAATTG--ATCTTAGGGAAAgtaatattctttcttcttttcctgatgTGCGCT-------TAAAAAAGTCATGTCATCATTTTAATTGTGTCATCT----GCCAGTTTAGTGGTAGCTAGATTAGGCAGAGCCTGAATAGTGTGCATAT-GAAATGTACGTCACCAGAACATGAGAACATGTTACCTGTGAGAGA-AGAATGAGCATTTTGGCCAGGGCAGATACTTGACTACA-CTttgacatgaaa-gaaaaaaaggcttaaaTCATTCCTGTT-GGGG--AGCTACTGCTGAAACACCAATAGGGTTAATTTTTGCTCTTGGAGGGAAGAAATACTGTGGGTGACATACATTTAACTAGATGCCCAGTCCTTATCCATGTC----ATTTCGGAATGTTTCTCAGGTGACTAGAACTT---TTT--AAAGgcacaaaa--------ttttaatttctccttcccaccctccttccttc i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34366401 901 + 128595539 GTTTCCTGAATGCCCAGCATCATGCCATTAAAGAAGTAAGTGCTGTCTTCTGCATTCTCAAAGAGCTTTTAATCTAGTTGAGGATGCAGCACGTGAATTCCCAGG--CA------------GTAGAAAGTCAAAAAGCC----------------------AGACTCAAATTAGAGCACTTTT-ATTGATT-----TTTTCTTCTGGCTTCTAGAATTCTATTTTGTAGTCTTTAATTACTCTTC------TA-----AACTACTTTTACAGCACTATTCGAAAAATATATTTATG--TTTTAGAAGTGTGAACTCAAATCCCCCGATTGTGTTGGAAGCCTA-TTTAATGTACCTTGATTTGGGGTGGTAATGAAGGGAAAGAGGCCCTCTGAGGGGACAGACCAATGTGGTTAG-GAAGACCTGAATCAGCACATCTTTGGCACCAGGATTTTTGATTGATCCAGCATGAATAATTCAAAGGCTTTATTTGTATGTTGAATGTGGAAGGAGAATTGATATCTTAGGGAAAGTAATATTCTTTCTTCTTTTCCTGATGTGCGCT-------TAAAAAAGTCATGTCATCATTTTAGTTGTGTCATCT----GCCAGTTTCGTGGTAGCTAGATTAGGCAGAGCCTGAATAGTGTGCATAT-GAAATGTACATCACCAGAACATGAGAACATGTTACCTGTGAGAGT-AGAATGAGCATTTTGGCCAAGGCAGATACTTGACTACA-CTTTGACATGAAA-GAAAAAAAGGCTTAAATCATTCCTGTTGGGGG--AGCTATTGCTGAAACACCAAGAGGGTTAATTTTTGCTCTTGGAGGGAAGAAATACCGTGGGTGACATACATTTAACTAGATGCCCAGTCCTTATCCATGTC----ATTTCTGAATGTTTCTCAGGTGACTAGAACTT---TTT--AAAGGCACACAA--------TTTTAATTTctccttcccaccctccttccttc i chlSab2.chr10 C 0 I 262 s calJac3.chr6 87853378 908 - 158406734 GTGCCCTGAATGCCCAGCATCATGCCGTTaaagaagtaagagccgtctcccatgctctcaaagagcttttaatctagttgaggatgcagcacttgaattcccagg--ca------------atAGAAAGTCAAAAAGCC----------------------AGAGTCAAATTAGAGCACTTTT-ATT--TT-----TTTTCCTGTGGCTTCCAGAGTTCTATTTTGTAGTCTTTAATTACTCTTCCAAACTCA-----AACTACTTTTACAGCACTATTTGAAAAAGATATTTATG--TTTTAGAAGTGTGAACTCAAATCACCCAATTGTGCTGGAAGCCTA-TTTAATGTACCGTGATTTAGGGCAGTAATAAAGGGAAAGAGGCCCTCTGAGGGG-CAGACCAATGTGGTGAG-GAAGGTCTGAATCAGCACTTCTTTGGCTCCAGGAG-TTTGATTGATCCAGCATGAATGATTTGAAGGCTTTATTTGTATGTTGAATGTGGAAGGAGAATTGCTATCTTAGGGGAAGTAATATTCTTTCTTCTTTTCCTGATGAGCTCT-------TAAAAAAGTCATGTCACCATTTTAATTGTGTCGTCT----GCCAGCTTAGTGGCAACTAGATTAGGCAGACCCTGAATAGTGTGCATAT-GAAATTTATGTCACCAGAACATGAGAACACGTTACCTACGAGAGT-AGATTGAACACTTTGGCCAAGGCAGAGACTTGGCTACA-GTTTGACATAAAA-CAAAAAGAGGCTTCAATCATTCCTTTTGGGGGGCGTCTGTTGCTGAAACATCACCAGGGTTAATTTTTGCTCTTGGAGGGGAGAAATACTATGGGTGACATACATTTATCTAGATGCCAAGTCCTCATCTGTGTC----ATTTCTGAATGGTTCTCAGGAGACCAGAACTTAAAATT--AAAGACACAAAA--------TTTTAGTTTCCCTTTCCCATCCTCTTTCCTTT i calJac3.chr6 C 0 C 0 s mm10.chr2 49703814 694 + 182113224 GTTCTCTGAGTGCCCAGCA--------------------------------------TCAGAGAGC--------------AGCAGGTAGT----------CCAGA--TA------------CCTGAGAATCAGAAAGC----------------------------CCAATTAAAACA-TTTT-GTTGATC-TTTTTTTTTTTCTATGCTCCAGCATGTTATTCTTTAGTTTTAAGTTACTCTCT------TCCTAGTACTTTCTTTTCTAGCATTTTTCAGAAAAGATATTTGTGACTTTCAGATGTGTGAACTCAAATCACTCCATGATCTTCGAAGTCTG-TTTCATGTGCCTTGGTTTGGTG-------GAGGCGGAGGTGGCC-----------CAGATCAGTATGTTTCG-G--------------------------------------------TCCAGCAAGAATAATTCAG----TCTGTTTTCTTGTTGACTGTGAGAGG-GGATTGGTGACTCGGGGAGAGGGATAGTATTTG---TGTTCCTGGTGTGCACTGCTCTCAGAAGGAAACCATGCTACCACTTTAATCAAGCCACCT----GTCA---TAGTGACAGTTGGACCCAGCAGAGACTGAGTAGTGTACAT-T-TAAATTCATGTCACAAGAGTGTGAGAACATTGTACCTGCAGAGGC-AGAGTGAGCCACTT-GCGAAGGTGCACACATTGGTGCA--TTTGACATAAAA-CCAAGAG----TTCAGTCACCTCTGTTGGAGA--ACCTGTTGCTAGGATACCAGAGGG--TAACCATAGCCCTTGGA-GGAAGAGATGCTG---------------------------------------------------------TTCTTCACTGGTCACGAGAGCTT-------------------------------TAATTCCTCCTTCATGACTAACCTTTT-- i mm10.chr2 C 0 C 0 s canFam3.chr19 50616873 912 + 53741614 GTCCCCTGAGCGCCCCGCATTgtgctggcaaagaagcagaagccattttctgcg-tctcaaagagcttctaatctagttgaggagGGAGCACTTGAATTTCTAGGGTCAAAGAGCTGGAGTGTGGGAAAGCAGAATGCTTCTGTGCTTTTAAAGGGATAAGATACTCAAATTAGAACCCTTTC-ATTGATTTTTTTTTTCCTTTTGGCTTCCAGCAGTTTATCTCTTAGTCTTTAATTACTCTTC------CA-----AAGTACTTTCATAGCACAGTTGGCAAAGGATAGTTGTAA-GTTTAGGAGTATGAACTTGGCTCACCCAGTTATCTTGGAAGCCTG-TTTAATGTACCGTGATGGGGGG-----------AGAAGGGAGCCCCC---GGGGGCTGGCCCATCAGTTTGGAGTAGGCCTGAATCAGCACA------------AGAGTTTTGGTTAATCTTGTATGAATAATTCAAAGGCCTTATTTGTATGTTGTATGTAGAAGGAGAATTGGTAATTTGGGGAAAGTAATA----TTCTTCTTTTTCTGATACGCACT-------T----------TTTTTTTGCTTAAATTGTGCCACCTCCTGCCCAGTTTCGTGGAAGCTGGGTTAGTC-----CTGAGCAGCGTGCATGCAAAAACTCATGTCATCAGAGCATAATAACAAGTTATCTGCAAGGGTAAGAGTGAGCACTTTGGCCAGGGGAGATCCTTGGCTGTACCTTTGACATAAAATGGAATAAAGACTCAGATCACTCCTGTTGCAGT---GCTGTTGCTGAAGCACCAGTAAGGACAGCTTTTGCTCTTGGAGGG-AGATATCCTGTGGGTGATGCTGGTTTAACCAGGTGCCAAATCCTCATCCAAATCCATTATTCCTCCGTGTTTCTCAGGAAACCAGAACTT---TTTCAAAAGACACGAAACTTAGAGCTTTTAATTTTTCATTCCCTGTCCCCC------ i canFam3.chr19 I 65 C 0 a score=21450.000000 s hg38.chr2_GL582966v2_alt 21036 20 + 96131 cctcACAAGC-AGGGAAATGG s panTro4.chr2B 153142458 20 + 247518478 CCTCACAAGC-AGGGAAATGG i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38345457 20 + 135000294 CCTCACAAGC-AGGGAAATGG i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82296515 20 - 85365473 cctcACGAGC-AGGGTAATGG i nomLeu3.chr20 C 0 C 0 s calJac3.chr6 87854286 20 - 158406734 CCTCATAAGC-AGGGAAATGG i calJac3.chr6 C 0 C 0 s canFam3.chr19 50617785 21 + 53741614 ACTGACAAGCAAGGAAAATGG i canFam3.chr19 C 0 C 0 e macFas5.chr12 37614128 0 + 132586672 C e mm10.chr2 49704508 0 + 182113224 C e chlSab2.chr10 34367302 262 + 128595539 I e papAnu2.chr12 11271070 0 + 104110932 C e rheMac3.chr12 11909874 0 + 106825570 C a score=1436833.000000 s hg38.chr2_GL582966v2_alt 21056 422 + 96131 CCTCACCAGAAGCTGGGAAGGTGCTTTGGAGCAGTGGTCCTTTCAGAAGAAGGTTTGGGTGTTTTAGATGGGAACTAGGTCTCAGAGCAGATTGGAAGGTTAGTTTCtgattagttttatatgtcagcttggctaggccatagtgcccagttacttaatcaaatacaaatcgaggcgttgctgtgaaggtactttgtagaatatgcttagcacttacaatcagctgactttaagcaaggcagattactctcaataataagggcgagc------atcatccactcagttaaaggccttaa-gagctaaaatggaggtttcatggagaagacaaaaattgtgcttcaggatggtaacatcaactccagcctcagtttgcagc-tgtcagcctgccttatggctttcaaacttgccagcccccatagtcatgt s panTro4.chr2B 153142478 422 + 247518478 CCTCACCAGAAGCTGGGAAGGTGCTTTGGAGCAGTGGTCCTTTCAGAAGAAGGTTTGGGTGTTTTAGATGGGAACTAGGTCTCAGAGCAGATTGGAAGGTTAGTTTCtgattagttttatatgtcagcttggctaggccatagtgcccagttacttaatcaaatacaaatcgaggcgttgctgtgaaggtactttgtagaatatgcttagcacttacaatcagctgactttaagcaaggcagattactctcaataataagggcgagc------atcatccactcagttaaaggccttaa-gagctaaaatggaggtttcatggagaagacaaaaattgtgcttcaggatggtaacatcaactccagcctcagtttgcagc-tgtcaggctgccttatggctttcaaacttgccagcccccatagtcatgt i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38345477 420 + 135000294 CCTCCCCAGAAGCTGGGAAGGTGCTTTGGAGCAGTGGTCCTTTCAGAAGAAGGTTTGGGTGTTTTAGATGGGAACTAGGTCTCACAGCAGATTAGAAGGTTAGTTTCtgattagttttatgtgtcagcttggctaggccatagtgcccagttacttaattaaatacaaatcgaggcattgctgtgaaggtactttgtag-atatgcttagcacttacaatcagctgactttaagcaaagcagattactctcaataataaggg-gagc------atcatccactcagttaaaggccttaa-gagctaaaatggaggtttcatggagaagacaaaaattgtgcttcaggatggtaacatcaactctggcctcagtttccagc-tgtcagcctgctttatgactttcaaacttgccagccctcatagtcatgt i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82296535 421 - 85365473 CCTCACCAGAAGCTGGGAAGGTGCTTTGGAGCAGTGGTCCTTTCAGAAGAAGGTTTGGGTGTTTTACATGGGAACTAGGTCTCAGAACAGATTGGAAGGTTAGTTTCtgattagttttatgtgtcagcttggctaggccatagtgcccagttactgaatcaaatacagatcggggcgttgctgtgaaggtactttgtag-atatgcttagcacttacaatcagctgactttaagcaaagcagattactctcaattataagggtgagc------atcatccactcagttaaaggccttaa-gagctaaaatggaggtttcatggagaagacaaaaattgtgcttcaggatggtaacatcaactccagcctcagtttccagc-ttccagcctgccttatagctttcaaacttgccagcccccatagtcacgt i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11909874 419 + 106825570 CCTCACCAGAAGCCGGGAAGGTGCTTTGGAGCAGTGTTCCTTTCAGAAGAAGGCTT-GGTGTTATAGATGAGAACTAGGTCTCAGAGTAAATTAGAAGGTTAGTTTTGgattagttttatgtgtcaacttggctaggccgtagtgcccagttacttaatcaaatgcaaatcgaggcattgctgtgaaggtactttgtag-atgtgcttagcacttacaatcagttgactttaagcaaagcaggttaccctcaataataagggcgagc------atcatccactcagttgaaggccttaa-gagctaaaatgcaggtttcacgtagaagac-aaaattgtgcttcaagatggtaacattaactccagcctcagtttccagc-tgtcagcctcccctatggctttcaaacttgccagcccctgcagtcatgg i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37614128 419 + 132586672 cctcACCAGAAGCCGGGAAGGTGCTTTGGAGCAGTGGTCCTTTCAGAAGAAGGCTT-GGTGTTATAGATGAGAACTAGGTCTCAGAGTAAATTAGAAGGTTAGTTTTGgattagttttatgtgtcaacttggctaggccgtagtgcccagttacttaatcaaatgcaaatcgaggcattgctgtgaaggtactttgtag-atgtgcttagcacttacaatcagttgactttaagcaaagcaggttaccctcaataataagggcgagc------atcatccactcagttgaaggccttaa-gagctaaaatgcaggtttcacggagaagac-aaaattgtgcttcaagatggtaacattaactccagcctcagtttccagc-tgtcagcctcccctatggctttcaaacttgccagcccccgcagtcatgg i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11271070 420 + 104110932 cctcaccaGAAGCCGGGAAGGTGCTTTGGAGCAGTGGTCCTTTCAGAAGAAGGCTT-GGTGTTATAGATGGGAACTAGGTCTCAGAGTAAATTAGAAGGTTAGTTTTGgattagttttatgtgtcaacttggctaggccgtAGTGCCCAGTTACTTAATCAAATGCAAATCGAGGCATTGCTGTGAAGGTACTTTGTAG-ATGTGCTTAGCACttacaatcagttgactttaagcaAAGCAGGTTACCCTCAATAATAAGGGCGAGC------ATCATCCactcagttgaaggccttaa-gagctAAAATGCAGGTTTCACGGAGAAGACAAAAATTGTGCTTCAAGATGGTAACATTaactccagcctcagtttccagc-TGTCAGCCTGCCCTATGGCTTTCAAACTTGCCAGCCCCCACAGTCATGG i papAnu2.chr12 C 0 I 323 s chlSab2.chr10 34367564 419 + 128595539 CCTCACCAGAAGCCGGGAAGGTGCTTTGGAGCAGTGGTTCTTTCAGAAGAAGGCTT-GGTGTTATAGATGGGAAGTAGGTCTCAGAGTAAATTAGAAGGTTAGTTTCGgattagttttatgtgtcaacttggctaggccatagtgcccagttacttaatcaaatgcaaatcgaggcgttgctgtgaaggtactttgtag-atgtgcttagcacttacaatcagttgactttaagcaaagcagattaccctcaataataagggcgagc------atcatccactcagttgaaggccttaa-gagctaaaatggaggtttcacggagaagacaaaaattgtgcttcaagatggtaacatcaactccagcctcagttt-cagc-tgtcagcctgccctatggctttcaaacttgccagcccccatagtcatgg i chlSab2.chr10 I 262 C 0 s calJac3.chr6 87854306 412 - 158406734 CCTCTCCAGGAGCTGGGAAGGTGCTTTAGAGCAGTGGTCCTTCCAGAAGAAGGTTTGGGTGTTTTAGATAGGAACTAGGACTCAGAGCAGATTAGAACATTAGCTTCtgattaactttatgtgtcaacttggctaggccatagtgcccagttgc-aaatcaaatggaaattgagacattgctgtgaaggtactttttag-atgtgcttagcacttataataagttgactttaagtaaagcagattactctcgataatgagggcaagc------atcatcccgtcagttaaaggccgtaa-gagctaaaacggaggtttctcagagaagac-aaaattctgcttcaagatggtaccatcaactgcagcctcagtttccagc--------ctaccctatggctttcaaacttgtcagcctccatagtcatgt i calJac3.chr6 C 0 C 0 s mm10.chr2 49704508 362 + 182113224 --------AAGGCCTGGAGAGTGTTTTGGAGCAGAAATGAGTTCTGAGGAAAGTGTAGCTGTTACACA---GCAGTGAGACTC-GGGCAGATCAGAAGGT---------------Ttggtgtacccaaatgtctaagc-------------tctttaatcaaacatgaatccagctattgctctgtctgtg-tttatag---atggctaatgtttgcactcagttgac--tgagtcaagtggatgatcctgggtaatgaacatggccttcccgatcattcacagag----aggccttgatgagcaaaagctgacgtttctcagggagaac------------tgaagaccagaaaacacacttgctctgca-tttcaagc-tggctgcttggact-tgactt---agctttgtggcccccacagacacat i mm10.chr2 C 0 C 0 s canFam3.chr19 50617806 408 + 53741614 CCTCACCGGGAAATGGGAAGGTGCTTTGCATCAGTCATGTTTCCAGTAGAAGGTTA-GGTGTTTAATGTGGGAACTGGGACTCAGAACACATTAGAAGGt-------gtgatggttttgtgtgtcagcttggctaggctgtagcactcaattatttagtcaaacaccaatctaggtgtcgctaggaagct-ttttgtaa-atgtggttaacatctaccatcagttgactttaggtaaagtacattgctctccgtagcatgggtgggc------ctcgtgcaatcagttgaaggccttaa-gagcaaaacctgaggtttctcagagaggaa-gaaattctgcctcaaaactgcagcgtcaatccccacgtcagtttccagcctgctagcctgcccagtggctttcagactttctagtccccacaatT---- i canFam3.chr19 C 0 C 0 a score=3032728.000000 s hg38.chr2_GL582966v2_alt 21478 909 + 96131 gagtcagtttcttaagtaaataaaAGAGTGAGGtatatcatatatatgtatgtatgtatatat--agtaggattttatatatacaataggatatataatatatta----tctatatttatctatcatctgtctttatctttctcctattggttctgtttctctggagagct----ctgataGTGAAGAATGCTATACTCT-CTATCCTCTCCTGCTCCCACAGTGGGAG-AATCTCCGTTTCTGtctctcacacac--------cattcacagtgcagaatcacacatgacagatttattctgtgtgctgaaggtgtgagg----ttgtctagag-ctccttattcaaatgcCAGCACTATCCTGAACACCTGGTGAGAAAAGAAGGATGCTG-AAATAAAAGGTATGAAGGTACCAAGAACAAATATCTTTGTGGTTATTCCAGGGAAGCCAAAGTAAACAGAAGAAACGCCAAAGGTAGGCACTCCTCGTGTCATTTAGAACTGACTGTGGCCAGGAAATA--TGAGTGT---AGGAAACCACTGGGAAAGCAGGTGGGGATGAGACTCAT---CAGAATGCAGTG---------GTTCTAGGTCTTCTCCCCACTCAAGGAGGGCTTCGTTCAAGTGCCAACTTACGAGGGTGCCTTCAG--TGTCATCACATGTGGGTGCTTAACCTCGGTGGTGGAGATG---------------------------------------------------------------------------------------------------GGTAGCATCAGCAGTCTTGGAA-GCTGGCCATGTGCTTCTGAA-ATGTAAACTGCAAATTCAGTGATGGAAGGATTGAGTGGTGCTGGG-AAGAAAATAACAGAATGCTCGACAATGGGGAGGTA-GTTTCCTCTTT-CCATTCTTTAGTAGAATATATCTAAGAGAAT-CTTTACTGACTTAACTGTCTCTGTAGCAGTATCTAGAT---GGAAGATGTACTGTGGCCTCTGATCTTTGTCCACTAGGCTTGGTCTG s panTro4.chr2B 153142900 910 + 247518478 gagtcagtttcttaagtaaataaaAGAGTGAGGTATATCATATATATGTATGTATGTATATAT--AGTAGGATTTTATATATACAATAGGATATATAatatatta----tctatatttatctatcatctgtctttatctttctcctattggttctgcttctctggagagct----ctgataGTGAAGAATGCTATACTCT-CTATCCTCTCCTGCTCCCACAGTGGGAG-AATCTCCGTTTCtctctctcacacac--------cattcgcagtgcagaatcacacatgacagatttattctgtgtgctgaaggtgtgagg----ttgtctagag-ctccttattcaaatgcCAGCACTATCCTGAACACCTGGTGAGAAAAGAAGGATGCTG-AAATAAAAGGTATGAAGGTACCAAGAACAAATATCTTTGTGGTTATTCCAGGGAAGCCAAAGTAAACAGAAGAAACGCCAAAGGTAGGCACTCCTCATGTCATTTAGAACTGACTGTGGCCAGGAAATA--TGAGTAT---AGGAAACCACTGGGAAAGCAGGTGGGGATGAGACTCAT---CAGAATGCAGTG---------GTTCTAGGTCTTCTCCCCATTCAAGGAGGGCTTCGTTCAAGTGCCAACTTATGAGGGTGCCTTCAG--TGTCATCACATATGGGTGCTTAACCTCGGTGGTGGAGATG---------------------------------------------------------------------------------------------------GGTAGCATCAGCAGTCTTGGAA-GCTGGCCATGTGCTTCTGAACATGTAAACTGCAAATTCAGTGATGGAAGGATTGAGTGGTGCTGGG-AAGAAAATAACAGAATGCTTGACAATGGGGAGGTA-GTTTCCTCTTT-CCATTCTTTAGTAGAATATATCTAAGAGAAT-CTTTTCTGACTTAACTGTCTCTGTAGCAGTATCTAGAT---GGAAGATGTACTGTGGCCTCTGATCTTTGTCCACTAGGCTTGGTCTG i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38345897 909 + 135000294 gagtcaatttcttaagtaaataaaAGAGTGAGGTATATCATATATATGTATGTGTGTATATAT--AATAGGATTTCATATATACAATAGGATATATAATATGTTA----TCTATATTTATCTGTCatctgtctttatctttctcctattggttctgtttctctggagagct----ctgataGTGAAGAATGCTACACTCT-CTATCCTCTCCTGCTCCCACAATGGGAG-AATCTCCGTTTCTCTCTCTCACACAC--------CATTCACAGTGCAGAATCACACATGACAGATTTATTCTGTGTGCTGAAGGTGTGAGG----TTGTCTAGAG-CTCCTTATTCAAATGCCAGCACTATCCTGAACACCTGGTGAGAAAAGGAGGATGCTG-AAACAAAAGGTGTGAAGGTACCAAGAACAAATATCTTTGTGGTTATT-CAGGGAAGCCAAAGTAATTAGAAGAAACGCCAATGGTAGGCACTCCTCATGTCATTTAGAACTGACTGTGGCCAGGAAATA--TGAGTAT---AGGAAACCACTGGGAAAGCAGGTGGGGATGAGACTTAT---CAGAATGCAGTG---------GTTCTAGGTCTTCTCCCCATTCAAGGAGGGCTTTGTTCAAGTGCCAACTTATGAGGGTGCCTTCAG--TGTCATCACGTATGGGTGCTTAACCTCGGTGGTGGAGATG---------------------------------------------------------------------------------------------------GGTAGCATCAGCAGTCTTGGAA-GCTGGCCGTGTGCTTCTGAACATGTAAACTGCAAATTCAGTGATGGAAGGATTGAGTGGTGCTGGG-AAGAAAATAACAGAATGCTCGACAATGGGGAGGTA-GTTTCCTCTTT-CCATTCTTTAGTAGAATATATCTAAGAGAAT-CTTTTCTGACTTAACTGTCTCTGTAGCAGTATCTAGAT---GGAAGATGTACTGTGGCCTCTGATCTTTGTCCACTGGGCTTGGTCTG i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82296956 910 - 85365473 gagtcaatttcttaagtaaataaaAGAGTGAGGtatatcatatatatgtatgtatgtatatat--aataggagtttatatatacaataggatatataatatgtta----tctatatttatCCATCatctgtctttatctttctcctattggttctgtttctctggagagct----ctgataGTGAAGAATGCTATACTCT-CTATCCTCTCCTGCTCCTACAGTGGGAG-AATCTCCATTTCTCTCTCTCACACAC--------CATTCACAGTGAAGAATCACACATAACAGATTTATTCTGTGTGCTGAAGGTGTGAGG----TTGTCTAGAG-CTCCTTTTTCCAATGCCAGCACTATCCTGAACACCTGGTGAGAAAAGGAGGATGCGG-AAACAAAAGGTATGAAGGTACCAAGAACAAATATCTTTGTGGTTATTCCAGGGAAGCCAAAGCAATTAGAAGAAACGCCAATGGTAGGCACTCTTCATGTCATTTAGAACTGACTGTGGCCAGGAAATA--CGAGTAT---AGGAAACCACTGGGAAAGCAGGTGGGGATGAGACTCAT---CAGAATGCAGTG---------GTTCTAGGTCTTCTCCCCGTTCAGGGAGGGCTTTGTTCAAGTGCCAGCTTATGAGGGTGCCTTCAG--TGTCATCACGTATGGGTGTTTAACCTCGCTGATGGAGATG---------------------------------------------------------------------------------------------------GGTAGCGTCAGCAGTCTTGGAA-GCTGGCCATGTGCTTCTGAACATGTAAACTGCAAATTCAGTGATGGAAGGATTGAGTGGTGCTGGG-AAGAAAATAACAGAATGCTTGACAATGGGCAGGTA-GTTTCCTCTTT-CCATTCTTTAGTAGAATATATCTAAGAGAAT-CTTTTCTGACTTAACTGTCTCTGTAGCAGTATCTAGAT---GGAAGATGTACTGTGGCCTCTGATCTTTGTCCACTGGGCTTGGTCTG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11910293 906 + 106825570 gagtcaatttcttaagtaaataaaAGAGTGAGATATATAATATATATGTATGTATATATA------ATAAGATCTTATGTATACAATAGGATATATAatatgtta----tctatatttatctatcacctgtctctatctt----ctgttggttctgtttctctggagagctctgactgataGTGAAGAATGCTATACTTT-CTATCCTCTCCTGCTTCCACAGTGGGAG-AATCTCTGTTTCtctctcacacacac--------cattcacggtgcagaatcacacatgacagatttattctatgagctgaaggtgtgaga----ttgtctagag-ctccttattcaaatgcCAGCACTATCCTGAACACCTGGTGAGAGAAGGAGGATGCTG-AAACAAAACATATGAAGGTACCAAGAACAAACATCTTTGTGGTTATTCCAGGGAAGCCAAAGTAATTAGAAGAAACGCCAATGGTAGGCACTCCTCATGTCTTTTAGAACTGACTGTGGCCAGGAAATA--TGAGTAT---AGGAAACCATTAGGGAAGCAGGTGGGGATGAGACTCAT---CAGAATGCAGTG---------GTTCTAGGTCTTTTCCCCATTCAAGGAGGGCTTTGTTCAAGTGCCAACTTATGAGGATGCCTTCAG--TGTCATCACGTATGGGTGTTTAACCTCGGTGGTGAAGATG---------------------------------------------------------------------------------------------------GGTACCATGAGCAGTCTTGGAA-GCTGGCCATGTGCTTCTGAACATGTAAACTGCAAATTCAGTGATGGAAAGATTGAGTGGTGCTGGG-AAGGAAATAACAGAATGCTCGAGAATGGGGAGGTA-GTTTCCTCTTT-CCATTCTTTAGTAGAATATATCTAAGAGAAT-CTTTTCTGACTTAACTGTCTCTGTAGCAGTATCTAGAT---GGAAGATGTACTGTGGCCACTGCTCTTTGCCTGCTGGGTTTGGTCTG i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37614547 906 + 132586672 gagtcaatttcttaagtaaataaaAGAGTGAGatatataatatatatgtatgtatatata------ataagatcttatgtatacaataggatatataatatgtta----tctatatttatctatcacctgtctctatctt----ctattggttctgtttctctggagagctctgactgataGTGAAGAATGCTATACTTT-CTATCCTCTCCTGCTTCCACAGTGGGAG-AATCTCTGTTTCTCTCTCACACACAC--------CATTCACGGTGCAGAATCACACATGACAGATTTATTCTATGAGCTGAAGGTGTGAGA----TTGTCTAGAG-CTCCTTATTCAAATGCCAGCACTATCCTGAACACCTGGTGAGAGAAGGAGGATGCTG-AAACAAAACATATGAAGGTACCAAGAACAAACATCTTTGTGGTTATTCCAGGGAAGCCAAAGTAATTAGAAGAAACGCCAATGGTAGGCACTCCTCATGTCTTTTAGAACTGACTGTGGCCAGGAAATA--TGAGTAT---AGGAAACCATTAGGGAAGCAGGGGGGGATGAGACTCAT---CAGAATGCAGTG---------GTTCTAGGTCTTTTCCCCATTCAAGGAGGGCTTTGTTCAAGTGCCAACTTATGAGGATGCCTTCAG--TGTCATCACGTATGGGTGTTTAACCTCGGTGGTGAAGATG---------------------------------------------------------------------------------------------------GGTACCATGAGCAGTCTTGGAA-GCTGGCCATGTGCTTCTGAACATGTAAACTGCAAATTCAGTGATGGAAAGATTGAGTGGTGCTGGG-AAGGAAATAACAGAATGCTCGAGAATGGGGAGGTA-GTTTCCTCTTT-CCATTCTTTAGTAGAATATATCTAAGAGAAT-CTTTTCTGACTTAACTGTCTCTGTAGCAGTATCTAGAT---GGAAGATGTACTGTGGCCACTGCTCTTTGCCTGCTGGGTTTGGTCTG i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11271813 906 + 104110932 gagtcaatttcttaagtaaataaaagagtgagatatataatatatatgtatgtatatata------ataagatcttatgtatacaataggatatataatatgtta----tctatatttatctatcACCTGTCTCTAtctt----ctattggttctgtttctctggagagctcTGACTGATAGTGAAGAATGCTATACTTT-CTATCCTTTCCTGCTTCCACAGTGGGAg-aatctctgtttctctctcacacacac--------catTCACGGTGCAGAATCACACATGACAGATTTATTCTATGCGCTGAAGGTGTGAAG----TTGTCTAGAG-CTCCTTATTCAAATGCCAGCACTATCCTGAACACCTGGTGAGAGAAGGAGGATGCTG-AAACAAAACATATGAAGGTACCAAGAACAAACATCTTTGTGGTTATTCCAGGGAAGCCAAAGTAATTAGAAGAAACGCCAATGGTAGGCACTCCTCATGTCTTTTAGAACTGACTGTGGCCAGGAAATA--TGAGTAT---AGGAAACCATTAGGGAAGCAGGTGGGGATGAGACTCAT---CAGAATGCAGTG---------GTTCTAGGTCTTTTCCCCATTCAAGGACGGCTTCGTTCAAGTGCCAACTTATGAGGATGCCTTCAG--TGTCATCACGTATGGGTGTTTAACCTTGGTGGTGAAGATG---------------------------------------------------------------------------------------------------GGTACCATGAGCAGTCTTGGAA-GCTGGCCATGTGCTTCTGAACATGTAAACTGCAAATTCAGTGATGGAAAGATTGAGTGGTGCTGGG-AAGGAAATAACAGAATGCTCGAGAATGGGGAGGTA-GTTTCCTCTTT-CCATTCTTTAGTAGAATATATCTAAGAGAAT-CTTTTCTGACTTAACTGTCTCTGTAGCAGTATCCAGAT---GGAAGATGTACTGTGGCCACTGCTCTTTGTCCGCTGGGTTTGGTCTG i papAnu2.chr12 I 323 C 0 s chlSab2.chr10 34367983 1002 + 128595539 gagtcaacttcttaagtaaataaaAGAGTGAGatatataatatatatatatgtatatatatat---ataAGATCTTATGTATACAATAGGATATATAatatgtta----tctatatttatctatcacctgtctctatctt----ctattggttctgtttctctggagagctctgactgataGTGAAGAATGCTATACTTT-CTATCCTCTCCTGCTTCCACGGTGGGAG-AATCACTGTTTCtctctcgcacacac--------cattcacggtgcagaatcacacatgacagatttattctatgtgctgaaggtgtgagg----ttgtctagag-ctccttattcaaatgcCAGCACTATCCTGAACACCTGGTGAGACAAGGAGGATGCTG-AAACAAAACGTATGAAGGTACCAAGAACAAACATCTTTGTAGTTATGCCAGGGAAGCCAAAGTAATTAGAAGAAACGCCAATGGTAGGCACTCCTCATGTCTTTTAGAACTGACTGTGGCCAGGAAATA--TGAGTAT---AGGAAACCATTAGGGAAGCAGGTGGGGATGAGACTCAT---CAGAATGCAGTG---------GTTCTAGGTCTTTTCCCCATTCAAGGAGGGCTTTGTTCAAGTGCCAACTTATGAGGATGCCTTCAG--TGCCATCATGTGTGGGTGTTTAACCTCGGTGGTGAAGATGGGTACCATGAGCAGTCTTGGAAGCTGNNNNNNNNNNTGCCAACTTATGAGGATGCCTTCAGTGCCATCATGTGTGGGTGTTTAACCTCGGTGGTGAAGAGGTACCATGAGCAGTCTTGGAA-GCTGGCCATGTGCTTCTGAACACGTAAACTGCAAATTCAGTGATGGAAAGATTGAGTGGTGCTGGG-AAGGAAATAGCAGAATGCTCGAGAATGGGGAGGTA-GTTTCCTCTTT-CCATTCTTTAGTAGAATATATCTAAGAGAAT-CTTTTCTGACT------TCTCCGTAGCAGTATCTAGAT---GGAAGATGTACTGTGGCCACTGCTCTTTGTCCACTGGGCTTGGTCTG i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87854718 905 - 158406734 aaaccaatttcttaggtaaataaaAGAGTAAGGtatatcatatatacatatatatgtgtatatataATAGGATCTTATATATACAATAGGGTATataatatgttatctgtctatatttatctatcatctgtctctatcta----acactggttctgtttctctggagagctctcactgataGTGAAGAATGCTATACTCT-CTATCCTCTCCTGCTCCCACAGTGGGGGTAATCTCAGTTTCTCTCTCTCACACAC--------CATTCACAGTGCAGAATCACACATTACAGATTTATTCTACGTGCTGAAGGTGTGAGG----TTGTGTAGAG-CTCCTTACTCAAATGCCGGCATTATCCTGAACACCTGGTGAGAGAAGGAGGATGCTG-AAACAAAAGGTATGAGGGTACCAGGAACAAATATCTTTGTGGTTCTTCCAGGGACGCCAAAGTAATTAGAAGAAACCCCCATGGTAGGCGCTCCTCATGTCATTTAGAACTGACTGTGGCCAGGAAATA--TGAGTAT---AGGAAACTGTCGGGGAAGCAGGTGGGGATGAGATTCAT---CAGAATGCAGCA---------GTTTGAGGTCTTCTCCCCATTCAAGGAGGGCTTTTTTCAAGTGCCAGCTTATGAGGATGCCTTCAG--TGTCCTCACGTGTGGGTGCTTAACCTCGGTAGTGGAGATG---------------------------------------------------------------------------------------------------GGTACCATCAGCAGTCTTGGAA-GCTGGCCATGTGCTTCTGAACATGTAAACTGCAAATTCAGTGACAGAAGGATTGAGCAGTGCTGGG-AAGGAAATAGCAGAATGCTCAAGAATGGGGAAGAGTGTTTCCTCTTTCCCATTCTTTAGT--------------AGAAT-CTTTTCTAACTTAACTCTCTCTGTAGCAGTACCTAGAT---GGAAGATGTACCGAGGCCTCTGCTGTTTGTCCCCTGGGCTTGGTCTG i calJac3.chr6 C 0 C 0 s mm10.chr2 49704870 773 + 182113224 gagccagtttccttagaaAACCAAGAGGAGA----------------CTGTGC-TGCATGTCC---------------------------------------TTC----TCTGTCTCTGCATTCCTTCCCCCTTGACCT-----CCGCCATACCAATTTCCCCAATAAACC----CAGATAGATGGAGATGGGATACTGGACTACCGTCTGCAGAGACCACAGT------CCTCTCCCTTACTCTCTCTCCCCTCCTCTCCTAACATTTCCTGTGTAGAG-CATATATTACAGACTTTTCCCTTGCACTGAGGGTGCGAGGTTGCTTGTCTAGAGCCTCCTTATTCAAATATGAGTACTCTCTGGAACACCTGGAGATCAAGGAAAGATGCCA-AAGCGAGA--------GGTACCAGGAGCAAGCATCTTC-TGGCTCCT-TAAGGAGGCCAGAGTAGTTAGAAGAGACTCTAAAGACATCCAGTGTGCTTTTCACTTAGA----ACTATGGCCAGCGAATAAGTAAGTATGAGAAGAGATCAGTGAGGAGACAGG-------------------------------------------------------------CAAGGGAGGCCTTTTTCAAGTG-CACGTGATGGGAATGCCTTCAA--GAGTGTTAGGTGGGAGTGCTCAGCCTC-TTGAAGGAGACA---------------------------------------------------------------------------------------------------TGC----TTAGTCCTCTTAGAA-CCTAAGTGTGTACCTCTTCACGCGCATACTGGACATTTGG-GATGGAGGGCCTGAA-GGAGCTGGGAAAGGTGATGACA-----CTTGAGAGCTGAAAGGTG-GCTG--TCTTC-TCATTTCACAGTAGA-----------------TGTTTCTTATATAACCACATCGGCATTTGCCTCCAAATTTAAGAAGGTGTGCTG-GTCCTCTGATCACTGTTGGCTATACCTATAACA i mm10.chr2 C 0 C 0 s canFam3.chr19 50618214 868 + 53741614 GGGATAA----------ACACAGAAATGTAGGGTATATCCTTTATGTCCATACCTGTACACGC-------------ATGTAT------GGATCTCTCTCTATTCA----TCGTtagataccttgtatctgcc------------ctattggttctctctctttagagaactctgaGTGACAA--AGGGACGCTGGGTTCC-TT----CCTCCTGC-CCTACAGTGGGAG-GATCTCCATCTCTGTCTCTGTCACAC--------CATTCACCACGCAGAGTCGCACGTTACAGAGGGAGTCTGTGTGCTGAAGGTGTGGGA----TTGTCGGGAG-CTCCTT--TCAAATGCCAGTACTATCCTGAACACCCAGAGGGGGAAGGAAGATGCTGAAAACAAGAGTTAGGAAGATACCAAGAACAAACATCGTTCTGACTCTTCC-GGGAGACCGAAGTAATTAGGAGA-ATTCAGGTGATATGTAACCTGTTGATCATTCAGAACTGACGATGGCCCGAAAGTA--CAAGTGC---AGGCGATTATGGAGGACTTGGGTGGGGATGGGATTTACGTGCAGAGTGATGTGAACCAAATAGTTGTAAAACTTGCTGTC-TTCAACAAGGGCTTGATTCACATGCCAAATTATGAGAACACCTGTAGAATGTTGTCACCTGTGGGTGCTTAACCTCAGTGGTAGAGATG---------------------------------------------------------------------------------------------------GACGCGGTTGGCAACCCTAGAAGGGTGGATATATGCTTCCAGACGTGTAAACTACAAATTCAGTGGCAGAGAGACCTAGAGGTGCTGGG-CCGGAGAT---AGAATGCTTGAGGACGTGGGGGCA-GGGTCTTCCTT-CCACTCCTCAATGAAACCCCCCTAAAGGAGTCCTTTTCTGACC---CTGTCCCTATGG--GGATCTAGGC---GGAGGTTGTGCTGTGGCTTCTGCTCTTTG----CTGTGCTTGGTCTG i canFam3.chr19 C 0 I 196 a score=904964.000000 s hg38.chr2_GL582966v2_alt 22387 242 + 96131 CCTTTCCTAAGGGTGGTTAACATTCATTAGCTTTGAGGTCTTTAAAAAA-------------------------------------TTTGGTCCTGGTTCC-CTCCCTGTGGGGAGAAGAGATTTTATACCTGGGGCATGCCTAGATCATATATCATTAAAGTAGTGCTTGACT---TGAAGCAAGCCAAAACAAGGAAAAGATGCAAAACAGATTCCCTGATAATGGCATCCTCACAAT---TTGACTCAGTTTTAA-AAGCAGGTCTTGCTGTTAGGGTATAAAC s panTro4.chr2B 153143810 242 + 247518478 CCTTTCCTAAGGGTGGTTAACATTCATTAGCTTTGAGGTCTTTAAAAAA-------------------------------------TTTGGTCCTGGTTCC-CTCCCTGTGGGGAGAAGAGATTTTATACCTGGGGCATGCCTAGATCATATATCATTAAAGTAGTGCTTGACT---TGAAGCAAGCCAAAACAAGGAAAAGATGCAAAACAGATTCCCTGATAATGGCATCCTCACAAT---TTGACTCAGTTTTAA-AAGCAGGTCTTGCTGTTAGGGTATAAAT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38346806 244 + 135000294 CCTTTCCTAAGGGTGGTTAACATTCATTAGCTTTGAGGTCTTTAAGAAA-------------------------------------TTTGGTCCTAGTTCC-CTCCCTGT-GGGAGAAGAGATTTTATACCTGGGGCACACCTAGATCATGTATCATTAAAGTAGTGCTTGACTTGATGAAGCAAGCCAAAACAAGGAAAAGATGCAAAACAGATACCCTGATAATGGCATCCTCACAAT---TTGACTCAGTTTTAA-AAGCAGGTCTTGCTGTTAGGGTATAAAT i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82297866 245 - 85365473 CCTTTCCTAAGGGTGGTTAACATTCATTAGCTTTGAGGTCTTTAAAAAA-------------------------------------TTTGGTCCTAGTTCC-CTCCCTGTGGGGAGAAGAGATTTTATACCTGGGGCACGCCTAGATCATATATCATTAAAGTGGTGCTTGACTTGATGAAGCAAGCCAAAACAAGGAAAAGATGCAAAACAGATACCCTGATAATGGCATCCTCACAAT---TTGACTCAGTTTTAA-AAGCAGGTCTTGCTGTTAGGGTATAAAT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11911199 245 + 106825570 CCTTTTCTAAGGGTGGTTAACATTCGTAAGCTTTGAGGTCTTTAAAAAA-------------------------------------TTTGGTCCTAATTCC-CTCCCTGTGGGGAGAAGAGATTTTATACCCAGGGCACGCCTAGATCATATATCATTAAAGTAGTGCTTGACTTGCTGAAGCAAGCCAAAACAAGGAAAAGATGTAAAACAGATACCCTGATAATGGCATACTCACAAT---TTGACTCAGTTTTAA-AAGCAGGTCTTGCTGTTAGGGTATAAAT i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37615453 245 + 132586672 CCTTTTCTAAGGGTGGTTAACATTCGTAAGCTTCGAGGTCTTTAAAAAA-------------------------------------TTTGGTCCTAATTCC-CTCCCTGTGGGGAGAAGAGATTTTATACCCAGGGCACGCCTAGATCATATATCATTAAAGTAGTGCTTGACTTGCTGAAGCAAGCCAAAACAAGGAAAAGATGTAAAACAGATACCCTGATAATGGCATACTCACAAT---TTGACTCAGTTTTAA-AAGCAGGTCTTGCTGTTAGGGTGTAAAT i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11272719 245 + 104110932 CCTTTTCTAAGGGTGGTTAACATTCGTAAGCTTTGAGGTCTTTAAAAAA-------------------------------------TTTGGTCCTAATTCC-CTCCCTGTGGGGAGAAGAGATTTTATACCCGGGGCACGCCTAGATCATATATCATTAAAGTAGTGCTTGACTTGCTGAAGCAAGCCAAAACAAGGAAAAGATGTAAAACAGATACCCTGATAATGGCATACTCACAAT---TTGACTCAGTTTTAA-AAGCAGGTCTTGCTGTTAGGGTATAAAT i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34368985 245 + 128595539 CCTTTTCTAAGGGTGGTTAACATTCATAAGCTTTGAGGTCTTTAAAAAA-------------------------------------TTTGGTCCTAATTCC-CTCCCTGTGGGGAGAAGAGATTTTATACCCGGGGCACGCCTAGATCATATATCATTAAAGTAGTGCGTGACTTGCTGAAGCAAGCCAAAACAAGGAAAAGATATAAAACAGATACTCTGATAATGGCATACTCACAAT---TTGACTCAGTTTTAA-AAGCAGGTCTTGCTGTTAGGGTATAAAT i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87855623 237 - 158406734 CCTTTTCTAAGGGTGGTTAACATTCATTAGCTTTGAGGTCTTTAAAAAA-------------------------------------CTTGGTCCTAGTTCCTCTCCCTGTGGGGAGAAG-------ATGCCTGGGGCA--CCTAGATCATATATTATTGAAGTAGTGCTTGACTTGCTGAATCAAGCCAAAACAAGGAAAAGATGCAAAGCGGACACCCTGATAATGGCATCCTCACAAT---TTGACTCAGTTTTAA-AAGCATGTCTTGCTGGTATGGTATAAAT i calJac3.chr6 C 0 C 0 s mm10.chr2 49705643 254 + 182113224 CTCTTCCCCAAGGTG-----------TTAGCTTT-AAGTCTTTaaaaaaaaaaaaaagcaaaaaacaaaaacaaaaacaaaaaTCCCCAGGTTC--ATTTC-CTCCCTGGAGGGAGAAGAGCTCTAATACCCA-GGCAAACCCAGATGACACACTACTGAAATGATATTTGAACCTCTGCAGCAAGGCAACACAGG-----------AAACAGGTACCATGGTAATAGCATCCACACAGTAGGTTACCTC----TTGC-AAGTGGATCTT-CTGTTAGGGCTGAAAC i mm10.chr2 C 0 I 345 s canFam3.chr19 50619278 246 + 53741614 CGTTTTTCAAAGGTGGTTAACATTCATTAGCATTGACGTCTTTTAAAAA-------------------------------------CTGGGTCCTGGTTCC-CTTCCTGTGGGGAAAGGAGATGTTATATCTGGGGCAAGGCTGGATCATCTATTTTTTAAGCAGTGCTTGACTCTCTGAAGCAAACAGAAACAAAGAAAAATTGCAAAACAGAAACTGTGATAACTGTACCCTGAAGAT---TTGGCTCATTAGTGCTGAGCGGGTCTTGCCTTTAGGGTATATAC i canFam3.chr19 I 196 C 0 a score=1270233.000000 s hg38.chr2_GL582966v2_alt 22629 368 + 96131 TTAGGACTGA----ATTAAAGTTCTTTCCCAGAGTAGCCTTTGG--------------------TTAGGATTTTGCTCAGTTCCTGCTGCGGTTATAACTTGTGGAATAGACATTGATATCTGTATATACATTGAGGGCTCTGATTGAAAACCCTGAGAGTTTTTAGAAATGAAGAACC----CACTTTTGTATTTCTTTGTGAATGATCAGGCCAC-TTTGGATTAATCAAATAGTATCACAGCCAGTTTCACCTTTAAAGAGGATGAGTGAGCAGTCAGTAAGTGGCTAGAATAAGGCTTCTATGGGTCATTGACTTGTTTCTCTATATCAAAGAGATAATGTCCTGGAACCATAAGGCTGGTTGGTATCACAATTGCTGTATATAGCTTCTGCT s panTro4.chr2B 153144052 368 + 247518478 TTAGGACTGA----ATTAAAGTTCTTTCCCAGAGTAGCCTTTGG--------------------TTAGGATTTTGCTCAGTTCCTGCTGTGGTTATAACTTGTGGAATAGACATTGATATCTGTATACACATTGAGGGCTCTGATTGAAAACCCTGAGAGTTTTTAGAAATGAAGAACC----CACTTTTGTATTTCTTTGTGAATGATCAGGCCAC-TTTGGATTAATCAAATAGTATCACAGCCAGTTTCACCTTTAAAGAGGATGAGTGAGCAGTCAGTAAGTGGCTAGAATAAGGCTTCTATGGGTCATTGACTTGTTTCTCTATATCAAAGAGATAATGTCCCGGAACTATAAGGCTGGTTGGTATCACAATTGCTGTATATAGCTTCTGCT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38347050 366 + 135000294 TTAGGACTGA----ATTAAAGTTCTTTCCCAGAGTAACCTTTGG--------------------TTAGGATTTTGCTCAGTGCCTGCTGTGGTTATAACTTGTGGAATAGACATTGGTATCTGTATACACATTGAGGGCTCTGATTGAAAACCTTGAGAGTTTTTAGAAATGAAGAACC----CACTTTTGTATTTCTTTGTGAATGATCAGGCCAC-TTTGGATTAATCAAATAGTATCACAGTCAGTTTCACCTTTAAAGAGGATGAGTGAGCAGTCGGTAAGTGGCTAGAATAAGGCTTCTATGGGTCATTGACTTGTTTCTCTATATCAAAGAGATAATGTCCCAGAACTATAAGGCTGGTTGGTATCACAATTGCTG--TATAGCTTCTGCT i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82298111 366 - 85365473 TTAGGACTGA----ATTAAAGTTCTTTCCCAGAGTAGCCTTTGG--------------------TTAGGATTTTGCTCAGTGCCTGCTGCGGTTATAACTTGTGGAATAGACATCGATATCTGTATACACATTGAGGGCTCTGATTGAAAACCCTGAGAGTTTTTAGAAATGAAGAACC----CACTTTTGTATTTCTTTGTGAATGATCAGGCCAC-TTTGGATTAATCAAATAGTATCACAGTCAGTTGCACCTTTAAAGAGGATGAGTGAGCAGTCAGTAAGTGGCTAGAATAAGGCTTCTATGGGTCATTGACTTGTTTCTCTATATCAAAGAGATAATGTCCCAGAACTATAAGGCTGGTTGGTATCACAATTGCTG--TATAGCTTCTGCT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11911444 386 + 106825570 TTAGGACTGA----ATTAAAATTCTTTCCCAGAGTAGCCTTTGGATTCTTTCTCAGAGTAGCCTTTAGGATTTTGCTCAGCGCCTGCTATGGTTGTAACTGGTGGAATAGACATTGGTATCTGTGTACACAGTGGGGGCTCTGATTGAAAACCCTGAGAGTTTTTAGAAATGAAGAACC----CACTTTTGTATTTCTTTGTGAATGATCAGGTCAC-TTTGGATTAATCAAATAGTATCACAGTCAGTTTGACCTTTAAAGAGGATGAGTGAGCAGTCAGTAAGTGGCTAGAATAAGGCTTCTGTGGGTCATTGGCTTGTTTCTCTATATCAAAGAGATAATGTCCCAGAACTATAAGGCTGGTTGGTATCACAATTGCTG--TATAGCTTCTGCT i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37615698 386 + 132586672 TTAGGACTGA----ATTAAAATTCTTTCCCAGAGTAGCCTTTGGATTCTTTCTCAGAGTAGCCTTTAGGATTTTGCTCAGCGCCTGCTATGGTTGTAACTGGTGGAATAGACATTGGTATCTGTGTACACAGTGGGGGCTCTGATTGAAAACCCTGAGAGTTTTTAGAAATGAAGAACC----CACTTTTGTATTTCTTTGTGAATGATCAGGTCAC-TTTGGATTAATCAAATAGTATCACAGTCAGTTTGACCTTTAAAGAGGATGAGTGAGCAGTCAGTAAGTGGCTAGAATAAGGCTTCTGTGGGTCATTGGCTTGTTTCTCTATATCAAAGAGATAATGTCCCAGAACTATAAGGCTGGTTGGTATCACAATTGCTG--TATAGCTTCTGCT i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11272964 386 + 104110932 ATAGGACTGA----ATTAAAATTCTTTCCCAGAGTAGCCTTTGGATTCTTTCTCAGAGTAGCCTTTAGGATTTTGCTCAGCGCCTGCTATGGTTGTAACTGGTGGAATAGACATTGGTATCTGTGTACACAGTGGGGGCTCTGATTGAAAACCCTGAGagtttttagaaatgaagaacc----cacttttgtatttctttgtgaaTGATCAGGTCAC-TTTGGATTAATCAAATAGTATCACAGTCAGTTTGACCTTTAAAGAGGATGAGTGAGCAGTCAGTAAGTGGCTAGAATAAGGCTTCTGTGGGTCATTGGCTTGTTTCTCTATATCAAAGAGATAATGTCCCAGAACTATAAGGCTGGTTGGTATCACAATTGCTA--TATAGCTTCTGCT i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34369230 386 + 128595539 TTAGGACTGA----ATTAAAATTCTTTCCCAGAGTAGCCTTTGGATTCTTTCTCAGAGTAGCCTTTAGGATTTTGCTCAGTGCCTGCTATGATTGTAACTGGTGGAATAGACATTAGTATCTGTGTACACAGTGGTGGCTCTGATTGAAAACCCTGAGAGTTTTTAGAAATGAAGAACC----CACTTTTGTATTTCTTTGTGAATGATCAGGTCAC-TTTGGATTAATCAAATAGTATCACAGTCAGTTTGACCTTTAAAGAGGATGAGTGAGCAGTCAGTAAGTGGCTAGAATAAGGCTTCTGTGGGTCATTGGCTTGTTTCTCTATATCAAAGAGATAATGTCCCAGAACTATAAGGCTGGTTGGTATCACAATTGCTG--TATAGCTTCTGCT i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87855860 364 - 158406734 TTAGGACGGA----ATTGAAGTTCTTTCCCACAGTAGCCTTTGG--------------------TTAGGATTTTGCTCAGTGCCTGCTGTGGTAATAACTTGTGGAATAGACATTGATAACTGCATACACACTGGGGACTCTGACTGAAAAACAAAGGAGTTTTTAGAAATGAAGAGCC----CACTTTTATATTTCTC--TGAATGATCAGGCCAC-TTTGGAGTAATCAAATAGTATCACAGTCAGTTTGACCTTTAAAGAGGATGCGTGAACAGTCAGTAAGTGGCTAGAATAAGGCTTCTGTGGGTCATTGGCTTGTTTCTCTATTTCAAAGAGTTAATGTCCCAGAACTATAAGGCTGGTTGGTATCGCAATTGCTA--TATAGCTTCTGCT i calJac3.chr6 C 0 C 0 s canFam3.chr19 50619524 368 + 53741614 ------CTGAGGTTAGTTAAGGTCTTTCCCTAAGTGGTC-TTGG--------------------TTAGGATTTTGCGCAGTGTCTGCTATGAATATAACTTGTGGAATAGGCATTTATTTCTGTGTACAGCTTGGGGGCTCTGGCTGAAAAAACTGAGGGTCTTTGGGAATGAAGACTCAAGACAGTTGTCAGTTCCTTTGGGAGTAATCAGGTCACACTGGGATTAACCAAACGTTGTCACGGTGAGGTTGACCTATGAAGATGGTGAGGGAGCCGCGGATCTACGGCTAGAGTAAGGCTTCAGCAGATCACTGTTTTGTTTTCCTATACTGGGAAGATAACCTCCCAAAACTGTAGGTCTGTGTGGTATCGCTATGGTTA--TATAGGTTCAGCT i canFam3.chr19 C 0 C 0 e mm10.chr2 49705897 345 + 182113224 I a score=711784.000000 s hg38.chr2_GL582966v2_alt 22997 240 + 96131 AGAC-AAAATCAC-AAAACCTGCCTTAAGAGCACTTCTTAATTTCTGCTGTCTTCTTGATTTTGTGTCTCCCTGTAAG---CTACCTGAAGTTCTTTTGGAAACAAGGCTGAACAATAAATGCACACGTGTGGGCCTGTGCCCAAGTTCCGG--ATCATGTT-----CACTG------------------------GCAGCCTCAC---------GCCCTAGATCCA------------------------------AACC---ACAACAAGACAGCAGAACACTGTGTAACC-GCAT-TGA----------TGGCAACTAGCTAGATAT s panTro4.chr2B 153144420 240 + 247518478 AGAC-AAAATCAC-AAAACCTGCCTTAAGAGCACTTCTTAATTTCTGCTGTCTTCTTGATTTTGTGTCTCCCTGTAAG---CTATCTGAAATTCTTTTGGAAACAAGGCTGAACAATAAATGCACACGTGTGGGCCTGTGCCCAAGTTCCGG--ATCATGTT-----CACTG------------------------GCAGCCTCAC---------GCCCTAGATTCA------------------------------AACC---ACAACAAGACAGCAGAACACTGTGTAACC-GCAT-TGA----------TGGCAACTAGCTAGATAT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38347416 241 + 135000294 AGAC-AAAATCACAAAAACCTGCCTTAAGAGCACTTCTTAATTTCTGCTGTCTTCCTGattttgtgtctccctgtaag---ctacctgaaattcttttggaaacaaggctgaacaataaatGCACACGTGTGGGCCTGTGCTCAAGTTCCGG--ATCATGTC-----CACTG------------------------GCAGCCTCAC---------GCCCTAGATCCA------------------------------AACC---ACAACAAGACAGCAGAACACTGTGTAACC-TCAT-TGA----------TGGCAACTAGCTAAATAT i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82298477 237 - 85365473 AGAC-AAAATCAC-AAAACCTGCCTTAAGAGCACTTCTTAATTTCTGCTGTCTTCTTGATTTTGTGTCTCCCTGTAAG---CTACCTGAAATTCTTCTGGAAACAAGGCTGAACAATAAATGCACACATGTGGGCCTGTGCTCAAGCTCCGG--ATCATGTC-----CACTG------------------------GCAG-CTCAC---------GCCCTAGATCCA------------------------------AACC---ACGACAAGACAGCAGAGCAC--TGTAACC-GCAT-TGA----------TGGCAACTAGCTAAATAT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11911830 229 + 106825570 AGACAAAAATCAC-AAAACCTGCCTTAAGAGCACTTCTTAATTTCTGCTGTCTTCTTGATTTTGTGTCTCCCTGTAAGCTCCTACCTGAAATTCTTTTTGAAACAAAGCTGAGCAATAAATGCACACGTGTAGGCCTGTGCTCCAGCTCCGG--ATCATGTT-----CACCG------------------------GCAGCCTCAC---------GCCCTAGATCCA------------------------------AACC------ACAAGACAGCAGAACACTGTGTAACC-ACAT-CGA----------TGGCAG------------ i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37616084 229 + 132586672 AGACAAAAATCAC-AAAACCTGCCTTAAGAGCACTTCTTAATTTCTGCTGTCTTCTTGATTTTGTGTCTCCCTGTAAGCTCCTACCTGAAATTCTTTTTGAAACAAAGCTGAGCAATAAATGCACACGTGTAGGCCTGTGCTCCAGCTCCGG--ATCATGTT-----CACCG------------------------GCAGCCTCAC---------GCCCTAGATCCA------------------------------AACC------ACAAGACAGCAGAACACTGTGTAACC-ACAT-CGA----------TGGCAG------------ i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11273350 229 + 104110932 agacaaaaatcac-aaaacttgCCTTAAGAGCACTTCTTAATTTCTGCTGTCTTCTTGATTTTGTGTCTCCCTGTAAGCTCCTACCTGAACTTCTTTTTGAAACAAAGCTGAGCAATAAATGCACACGTGTAGGCCTGTGCTCCAGCTCCGG--ATCATGTC-----CACCG------------------------GCAGCCTCAC---------GCCCTAGATCCA------------------------------AACC------ACAAGACAGCAGAACACTGTGTAACC-ACAt-cga----------tggcag------------ i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34369616 229 + 128595539 AGACAAAAATCAC-AAAACCTGCCATAAGAGCACTTCTTAATTTCTGCTGTCTTCTTGATTTTGTGTCTCCCTGTAAGCTCCTACCTGAAATTCTTTTTGAAACAAAGCTGAGCAATAAATGCACACGTGTAGGCCTGTGCTCCAGCTCCGG--ATCATGTC-----CACCG------------------------GCAGCCTCAC---------GCCCTAGATCCA------------------------------AACC------ACAAGACAGCAAAACACTGTGTAACC-ACAT-TGA----------TGGCAG------------ i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87856224 240 - 158406734 AGAC-AAAATCAC-AAAACCTGCCTTAAGAGCACTTCTTAATTTCTGCTGTCTTGTTCATTTTGTGTCTCCCTGTAAG---CTACCTGAAATTCTTTTGAGAACAAGGCTGAGCAGTAAATGCACACATGTGAGCCTGTGCTCAAGCTCTGG---TCATGTC-----CACTG------------------------GTGGCCTCAC---------ACCCCAGATCCA------------------------------AACC---AAAACAAGGCAGCAGACCACTGTGAAACAGGCAT-TGA----------TGGCAACTAGCTAAATAT i calJac3.chr6 C 0 C 0 s mm10.chr2 49706242 234 + 182113224 AGAC-AAAATTAT-AAAATTGGCCTTTAGAGCCTTTCCCAGTTCCTAGTGTCTTACTGAGTTCATGTGTGATTGTGAA---CTAACTGAAATTCTTTTGGAAGCTAAGCTGGACAATAAAGACACATATCTgggactggggagatggctcagcagttaagag-----cactg------------------------actgctcttcca----gagatcctgagttca------------------------------attcccagcaaccacatggtggctcac-----aacc-acctgtaa----------tgggat------------ i mm10.chr2 I 345 C 0 s canFam3.chr19 50619892 310 + 53741614 AGGC-AAAACCAT-AAAACCTGCCTTAAGAGCGCATCTCACGATTTGCTGTCCCATTGATTT--TGCTTCCTTGGAAG---CTACTTGAAATTCTTTCAGCGGCCGGGTTGAAGAGTAAATGCACATGGGTGTGCTCACGCGT---CCCTGA--ATTGTGTCTGTAACACCGTCCTTGAGCGCTCAGAGGATCCATGCTGATTCACTGTGTTTGGACCATGAGTCCAGATGTGATGCTGTTTAGTGTAATTCCAGTTAGCC------AGTATATGGAAACCCAAAGTAAAAGA-GCAA-AGAATGTGAAAGTTGGAAGATAATTGGATGT i canFam3.chr19 C 0 I 86 a score=119569.000000 s hg38.chr2_GL582966v2_alt 23237 62 + 96131 TAACAAAGGAGGAAACTGA-TTTTTTTTTCTTTTTTT-CCTCTGAAATCAGTTAAAG----CTAATTA s panTro4.chr2B 153144660 63 + 247518478 TAACAAAGGAGGAAACTGATTTTTTTTTTCTTTTTTT-CCTCTGAAATCAGTTAAAG----CTAATTA i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38347657 63 + 135000294 TAACAAAGGAGGAAACTGATTTTTTTTTTCTTTTTTT-CCTCTGAAATCAGTTAAAG----CTAATTA i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82298714 62 - 85365473 TAACAAAGGAGGAAACTAA-TTTTTTTTTCTTTTTTT-CCTCCGAAATCAGTTAAAG----CTAATTA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11912059 44 + 106825570 --------------------TTTCTTTTTCTTTTTTTACCTCTGAAATCAGTTAAAG----CTAATTA i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37616313 44 + 132586672 --------------------TTTCTTTTTCTTTTTTTACCTCTGAAATCAGTTAAAG----CTAATTA i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11273579 44 + 104110932 --------------------tttctttttcttttcttacctctGAAATCAGTTAAAG----CTAATTa i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34369845 44 + 128595539 --------------------TTTCTTTTTCTTTTTTTACCTCTGAAATCAGTTAAAG----CTAATTA i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87856464 61 - 158406734 TAACAAAGGAGGAAACTGA-TTTTTTTCTTTTTTGT--CCTCTGAAATCAGTTACAG----CTAATTA i calJac3.chr6 C 0 C 0 s mm10.chr2 49706476 49 + 182113224 ---------------ccga-tgtcctcttatggtgtg---cctgaagatagcaaaagtgtactcatat i mm10.chr2 C 0 C 0 e canFam3.chr19 50620202 86 + 53741614 I a score=85957.000000 s hg38.chr2_GL582966v2_alt 23299 28 + 96131 AGGGAAAGTGAATTTTGAATGTCCAAAT- s panTro4.chr2B 153144723 28 + 247518478 AGGGAAAGTGAATTTTGAATGTCCAAAT- i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38347720 28 + 135000294 AGGGAAAGTGAATTCTGAATGTCCAAAT- i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82298776 28 - 85365473 AGGGAAAGTGAATTTTGAATGTCCAAAT- i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11912103 28 + 106825570 AGGAAAAATGAATTTTGAATGTCCAAAC- i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37616357 28 + 132586672 AGGAAAAATGAATTTTGAATGTCCAAAC- i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11273623 28 + 104110932 aggaaaaatgaattttgaatgtgcaaat- i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34369889 28 + 128595539 AGGGAAAATGAATTTTGAATGTCCAAAT- i chlSab2.chr10 C 0 I 220 s calJac3.chr6 87856525 28 - 158406734 AAAGAAAGTTAAGTTTGAATGTCCAAAT- i calJac3.chr6 C 0 C 0 s mm10.chr2 49706525 24 + 182113224 acataaaataaat----aatccttaaaa- i mm10.chr2 C 0 C 0 s canFam3.chr19 50620288 29 + 53741614 GAGGAAAGAGAATTGTGAGTGGCCGAAGT i canFam3.chr19 I 86 C 0 a score=949524.000000 s hg38.chr2_GL582966v2_alt 23327 313 + 96131 AGAAAGAAGCTAGTGA---TCA--TTAGGCTCCTTCAT-----TCTCTAAAT-TTGCCAAAGTTGATGGT-AAAAAGAAAAAGAAAT-TGTAGATAT-TCTATATCCTTTTACTCTTAGTCTCTTGGGAGA-----ATGAGAGACTGAGACC---CTCTTTATTTCACTTTGCAAGATT--GTTTTTAACATCCTAGATAGGAGAATGTTTGTTCTAGTaaaaaaaaaaaaaaaaaaaaaaaacaataaaCCTCAGGGCACAAAAATTCA-GTATCTCTCTTAGTAACCCTAGTTTATTCTGC-ATCTGGAAATTCTTGTATCTGACTTGATTTCTTTC s panTro4.chr2B 153144751 311 + 247518478 AGAAAGAAGCTAGTGA---TCA--TTAGGCTCCTTCAT-----TCTCTAAAT-TTGCCAAAGTTGATGGT-AAAAAGAAAAAGAAAT-TGTAGATAT-TCTATATCCTTTTACTCTTAGTCTCTTGGGAGA-----ATGAGGGACTGAGACC---CTCTTTATTTCACTTTGCAAGATT--GTTTTTAACATCCTAGATAGGAGAATGTTTGTTCTAGT--AAAAAAAAAAAAAAACAAAAATCAATAAACCTCGGGGCACAAAAATTCA-ATATCTCTCTTAGTAACCCTAGTTTATTCTGC-ATCTGGAAATTCTTGTATCTGACTTGATTTCTTTC i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38347748 295 + 135000294 AGAAAGAAACTAGTGA---TCA--TTAGACTCCTTCAT-----TCTCTAAAT-TTGCCAAAGGTAATGGTAAAAAAGAAAAAGAAAT-TGTAGATAT-TCTATATCCTT------TTAGTCTTTTGGGAGA-----ATAAGGGACTGAGACC---CTCTTTATTTCActttgcaagatt--gtttttaacatcctagatagaagaatatttgttctagt--aaaaaataaata-----------aataaacctcagggcataaaaattca-gtatctctcttagtaaccctagtttattctgc-atctggaaattcttgtgtctgacttgatttctttc i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82298804 307 - 85365473 AGAAAGAAGCTAGTGA---TCA--TTAGACTCCTTCAT-----CCTCTAAAT-TTGCCAAAGTTAATGGT-AAAAAGAAAAAGAAAT-TGTAGATAT-TCTATATCCTTTTACTGTTAGTCTCTTGGGAGA-----ATGAGGGACTGAGACC---CTCTTTGTTTCACTCTGCAAGATT--GTTTTTAACATCCTAGATAGGAGAATATTTGTCCTAGT--aaaaaaacaaaaacaaaaa----caaaaaCCTCTGGGCACAAAAATTCC-GTCTCTCTCTTAGTGACTCTAGTTTATTCTGC-ATCTGGAAATTCTTGTATCTGACTTGATTTCTTTC i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11912131 306 + 106825570 AGAAAGAAGCTAGTGA---TCA--TTAGGCTCCTTCAT-----TCTCTAAAT-TTGCCAAAGTTAATGGT-AAAAAGAAAAAGAAAT-TGTAGACAT-TCTATATCCTTTTACTCTTACTCTCTTGAGGGA-----ATGAGGGACTGAGACC---CTCTTTATTTCACTTTGCAAGATT--GTTTTTGACATCCTAGATAGGAGAATATTTGTTCTATT--AAAAAAAAACACACACGC-----AATAAGCCTCGGGGCACAAAAATTCA-GTATCTCTCTTAGTAACTCTAGTTTATTCTGC-ATCTGGAAATTCTTGTGTCTGACTTGATTTCTTTC i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37616385 306 + 132586672 AGAAAGAAGCTAGTGA---TCA--TTAGGCTCCTTCAT-----TCTCTAAAT-TTGCCAAAGTTAATGGT-AAAAAGAAAAAGAAAT-TGTAGACAT-TCTAAATCCTTTTACTCTTACTCTCTTGAGGGA-----ATGAGGGACTGAGACC---CTCTTTATTTCACTTTGCAAGATT--GTTTTTGACATCCTAGATAGGAGAATATTTGTTCTATT--AAAAAAAAACACACACGC-----AATAAGCCTCGGGGCACAAAAATTCA-GTATCTCTCTTAGTAACTCTAGTTTATTCTGC-ATCTGGAAATTCTTGTGTCTGACTTGATTTCTTTC i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11273651 306 + 104110932 agaaagaagctagTGA---TCA--TTAGGCTCCTTCAT-----TCTCTAAAT-TTGCCAAAGttaatggt-aaaaagaaaaagaaat-tgtagaCAT-TCTATATCCTTTTACTCTTACTCTCTTGAGGGA-----ATGAGGGACTGAGACc---ctctttatttcactttgcaaGATT--GTTTTTGACATCCTAGATAGGAGAATATttgttctatt--aaaaaaaaacacacacac-----aataagcCTCGGGGCACAAAAATTCA-GTATCTCTCTTAGTAACTCTAGTTTATTCTGC-ATCTCGAAATTCTTGTGTCTGACTTGATTTCTTTC i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34370137 307 + 128595539 AGAAAGAAGCTAGTGA---TCA--TTAGGCTCCTTCAT-----TCTCTAAAT-TTGCCAAAGTTAATGGT-AGAAAGAAAAAGAAAT-TGTAGATGT-TCTATATCCTTTTACTCTTACTCTCTTGAGGGA-----ATGAGGGACCGAGACC---CTCTTTATTTCACTTTGCAAGATT--GTTTTTGACATCCTAGATAGGAGAATATTTGTTCTATT-AAAAAAAAAACACACACGC-----AATAAGCCTCGGGGCACAAAAATTCA-GTATCTCTCTTAGTAACTCTAGTTTATTCTGC-ATCTGGAAATTCTTGTGTCTGACTTGATTTCTTTC i chlSab2.chr10 I 220 C 0 s calJac3.chr6 87856553 289 - 158406734 AGAAAGAAGCTAGTGA---TCA--TTAGACTCCTTCAT-----TCTCTAAAT-TTGCCAAAGTTAATGGT-AAAAAGAAAAAGAAAT-T----ATAT-TCTACATCCTTTTACTCTTAGTCTCTTGGGGTA-----ATGAGGGACTGAGACT---CTCTTTATTGCGctttgcaagatt--gcttttgacatcctagatagaagaatatttgttctatt--aaaaaaaacc-------------agtaaacctcagagcacaaaaattca-atctctctcttagtaactgtagtttatttcgc-atctggaaattcttGTATC-----TGGTTTCTTTC i calJac3.chr6 C 0 C 0 s mm10.chr2 49706549 260 + 182113224 aacataaaaTAAATGAGACTCAGCCTAGGGTTTtacatatatatatataaat-atgtaaacgtcatatat-atatatatatatatatatatatatatatatatatacatacatacatatatTTAAAAGACACATATCTGGGTCATTGGCACCAGGCTCTGTATTG-ACTTATCATGTCTAAGTATGTACGAGTGTAGGCAGTA-AATATGTG---------GGAAAAAC---------------AAAAGATC--------CAGAAATTGC-ATAT-----------------------------AGGTGGA-------------GAGATGCTGCCTTTC i mm10.chr2 C 0 C 0 s canFam3.chr19 50620317 290 + 53741614 AGATAGGACCTAATGA--------TTAGGCTCCTCTCT-----TCTGTAAATATTTCTGAAGTTCATGGT-AAAGAGCAAAAGGGAC-TATAGATGT-TCAACATCTTTTTACTCTAAGTCTCTTAAAGGA-----ATGAGAGACTGAGATA---CTCTTTATTTTACTTCgtaaggtt--ggtttcaaacccctagacag---aatgtttgttctttt--taaaaca----------------aataa--ctccaggcacagagattcaggtatctctctcagtgactctggtttattccatgatttagaaattcttgcATCTAACTTGATTTCTTTC i canFam3.chr19 C 0 I 619 a score=802082.000000 s hg38.chr2_GL582966v2_alt 23640 259 + 96131 TCCATCAGTTTGTTTTTCTTAACTCAAtttttattgaatata------atatagtaaaatacataaacttaagtgcataactaa--tttttttttataaat------------------------------------------atatatacacatgtgaccaccacccaggatcttggaagcctctctctttgaccctctcagtcaacaccgaactctcaagggtaattgtcaccc---taacttccatcaacatagattgttattgcc------tgtctttgaattatttgaaaatgaaatcacccagtactgtttt s panTro4.chr2B 153145062 261 + 247518478 TCCATCAGTTTATTTTTCTTAACTCAAtttttattgaatata------atatagtaaaatgcataaacttaagtgcataactaatttttttttttataaat------------------------------------------atatatacacatgtgaccaccacccaggatcttggaagcctctctctttgaccctctcagtcaacaccgaactctcaagggtaattgtcaccc---taacttccatcaacatagattgttattgcc------tgtctttgaactatttgaaaatgaaatcacccagtactgtttt i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38348043 259 + 135000294 tccatcagtttaTTTTTCTTAACTCAAtttttattgaatata------atatagtgaaatgcataaacttaagtgcataactaa--ttttttttaataaat------------------------------------------atatatacacatgtgaccaccatccaggatcttggaagcctctctcttggaccctctcagtcaacaccgaactctcaagggtaattgtcaccc---taacttccatcagcatagattggtattgcc------tgtctttgaactatatgaaaatgaaatcacgcagtactgtttt i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82299111 259 - 85365473 TGCATCAGTTTATTTTTCTTAGCTCAAtttttattgaatata------atatagtaaaatgcataaacttaagttcataactaa--ttttttaaaataaat------------------------------------------atatatatacatgtgaccaccacccaggatcttggaagcctctctcttggaccctctcagtcaacaccgaactctcaagggtaattgtcaccc---taacttccatcaacatagattgttattgcc------tgtctttgaactatatgaaaatgaaatcacccagtactgtttt i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11912437 260 + 106825570 TACATCAGTTTATTTTTCTTAACTCAATTTTTATTGAATATG------atatagtaaaatgcataaacttaagtgtatgactga-ttttttttttacaaat------------------------------------------atgtatgcacatgtgaccaccacccagcatcttggaatcctctctcttggaccctctcagtcaacaccgaactctcaagggtaattgtcaccc---taacttccatcaacatagattagtattgcc------tgtcttcgaactatataaaagtgaaatcatgcagtactgtttt i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37616691 260 + 132586672 TACATCAGTTTATTTTTCTTAACTCAATTTTTATTGAATATG------atatagtaaaatgcataaacttaagtgtatgactga-ttttttttttacaaat------------------------------------------atgtatgcacatgtgaccaccacccagcatcttggaatcctctctcttggaccctctcagtcaacaccgaactctcaagggtaattgtcaccc---taacttccatcaacatagattagtattgcc------tgtcttcgaactatataaaagtgaaatcatgcagtactgtttt i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11273957 261 + 104110932 Tacatcagtttatttttcttaactcaatttttattgaatata------ataTAGTAAAATGCATAAACTTAAGTgtatgactgatttttttttttacaaat------------------------------------------atatatgcacatgtgacCACCACCCAGCATCTTAGAAGCCTCTCTCTTGGACCCTCTCAGTCAACACCGAACTCTCAAGGGTAATTGTCACCC---TAACTTCCATCAACATGGATTAGTATTGCC------TGTCTTTGAACTAGATAAAAGTGAAATCACGCAGTACtgtttt i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34370444 260 + 128595539 TACATCAGTTTATTTTTCTTAACTCAAtttttattgaatata------atatagtaaaatgcataaacttaagtgtatgactga-ttttttttttacaaat------------------------------------------atgtatgcacatgtgaccgccacccagtatcttggaagcctctctcttggaccctctcagtcaacaccgaactctcaagggtaattgtcaccc---taacttccatcaacatagattagtattgcc------tgtctttgaactatataaaagtgaaatcacgcagtactgtttt i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87856842 297 - 158406734 TGCATCAATTTATTTTTCTTAACTCAAtttttattgaatata------atatagtaaaatgcataaacttaagtgt----ctta--tatttttttacaaatacacacacaaacacacacacacatatatacatatatatgtagacacatacacacgtgaccaccacccagcatcttgggagcctctctcttggaccttctcagtcaacaccgaactatcaagggtaattgtcaccc---taatttccatcaacatagattagtattgcc------tgtctgtgaactatataaaaatgaaatcacacagtaccatatg i calJac3.chr6 C 0 C 0 s mm10.chr2 49706809 269 + 182113224 TATATAAGTTTATTTCTATAA--TGCAtttttatt-aatatagaatacatatagtaaggagcat-aacataattatacag-tca--taaacatttacaaat------------------------------------------gcacacaaacacgtaaccatctcccattgacttagaagtctgcctcttgcacctgcttagccagtgctctgtgctcaagagtaaccagcatcccgatgacttcagcccgcatggattgggattggcatgtaaggcttttgaacctcacatgcataaggccacatagtactgtttt i mm10.chr2 C 0 C 0 e canFam3.chr19 50620607 619 + 53741614 I a score=2069.000000 s hg38.chr2_GL582966v2_alt 23899 15 + 96131 gtatctggcttcttt s chlSab2.chr10 34370704 15 + 128595539 gtatctggcttcttt i chlSab2.chr10 C 0 I 1160 s mm10.chr2 49707078 14 + 182113224 -cattcagctgtctt i mm10.chr2 C 0 C 0 e canFam3.chr19 50620607 619 + 53741614 I e panTro4.chr2B 153145323 0 + 247518478 C e nomLeu3.chr20 82299370 0 - 85365473 C e macFas5.chr12 37616951 0 + 132586672 C e ponAbe2.chr2b 38348302 0 + 135000294 C e calJac3.chr6 87857139 0 - 158406734 C e papAnu2.chr12 11274218 0 + 104110932 C e rheMac3.chr12 11912697 0 + 106825570 C a score=91.000000 s hg38.chr2_GL582966v2_alt 23914 1 + 96131 t s mm10.chr2 49707092 1 + 182113224 t i mm10.chr2 C 0 C 0 e canFam3.chr19 50620607 619 + 53741614 I e panTro4.chr2B 153145323 0 + 247518478 C e nomLeu3.chr20 82299370 0 - 85365473 C e macFas5.chr12 37616951 0 + 132586672 C e ponAbe2.chr2b 38348302 0 + 135000294 C e calJac3.chr6 87857139 0 - 158406734 C e chlSab2.chr10 34370719 1160 + 128595539 I e papAnu2.chr12 11274218 0 + 104110932 C e rheMac3.chr12 11912697 0 + 106825570 C a score=0.000000 s hg38.chr2_GL582966v2_alt 23915 6071 + 96131 ttttttttttttttttttttttttttttttttatttctttttttttttttttttattatactctaagttttagggtacatgtgcacattgtgcaggttagttacatatgtatacatgtgccatgctggtgcgctgcacccactaatgtgtcatctagcattaggtatatctcccaatgctatccctcccccctcccccgaccccaccacagtccccagagtgtgatattccccttcctgtgtccatgtgatctcattgttcaattcccacctatgagtgagaatatgcggtgtttggttttttgttcttgcgatagtttactgagaatgatggtttccaatttcatccatgtccctacaaaggatatgaactcatcattttttatggctgcatagtattccatggtgtatatgtgccacattttcttaatccagtctatcattgttggacatttgggttggttccaagtctttgctattgtgaatagtgccgcaataaacatacgtgtgcatgtgtctttatagcagcatgatttatactcatttgggtatatacccagtaatgggatggctgggtcaaatggtatttctagttctaggtccctgaggaatcgccacactgacttccacaatggttgaactagtttacagtcccaccaacagtgtaaaagtgttcctatttctccgcatcctctccagcacctgttgtttcctgactttttaatgattgccattctaactggtgtgagatgatatctcatagtggttttgatttgcatttctctgatggccagtgatgatgagcatttcttcatgtgttttttggctgcataaatgtcttcttttgagaagtgtctgttcatgtccttcgcccactttttgatggggttgtttgtttttttcttgtaaatttgtttgagttcattgtagattctggatattagccctttgtcagatgagtaggttgcaaaaattttctcccatgttgtaggttgcctgttcactctgatggtagtttcttttgctgtgcagaagctctttagtttaattagatcccatttgtcaattttgtcttttgttgccattgcttttggtgttttggacatgaagtccttgcccacgcctatgtcctgaatggtaatgcctaggttttcttctagggtttttatggttttaggtttaacgtttaaatctttaatccatcttgaattgatttttgtataaggtgtaaggaagggatccagtttcagctttctacatatggctagccagttttcccagcaccatttattaaatagggaatcctttccccattgcttgtttttctcaggtttgtcaaagatcagatagttgtagatatgcggcattatttctgagggctctgttctgttccagtgatctatatctctgttttggtaccagtaccatgctgttttggttactgtagccttgtagtatagtttgaagtcaggtagtgtgatgcctccagctttgttcttttggcttaggattgacttggcaatgcgggctcttttttggttccatatgaactttaaagtagttttttccaattctgtgaagaaagtcattggtagcttgatggggatggcattgaatctgtaaattaccttgggcagtatggccattttcacgatattgattcttcctacccatgagcatggaatgttcttccatttgtttgtctcctcttttatttccttgagcagtggtttgtagttctccttgaagaggtccttcacatcccttgtaagttggattcctaggtattttattctctttgaagcaattgtgaatgggagttcacccatgatttggctctctgtttgtctgttgttggtgtataagaatgcttgtgatttttgtacattgattttgtatcctgagactttgctgaagttgcttatcagcttaaggagattttgggctgagatgatggggttttctagataaacaatcatgtcgtctgcaaacagggacaatttgacttcctcttttcctaattgaataccctttatttccttctcctgcctgattgccctggccagaacttccaacactatgttgaataggaggggtgagagagggcatccctgtcttgtgccggttttcaaagggaatgcttccagtttttgcccattcagtatgatattggctgtgggtttgtcatagatagctcttattattttgagatacgtcccatcaatacctaatttattgagagtttttagcatgaagggttgttgaattttgtcaaaggctttttctgcatctattgagataatcatgtggtttttgtctttggctctgtttatatgctggattacatttattgatttgcgtatattgaaccagccttgcatcccagggatgaagcccacttgatcatggtggataagctttttgatgtgctgctggattcggtttgccagtattttattgaggatttttgcatcaatgttcatcaaggatattggtctaaaattctcttttttggttgtgtctctgcccggctttggtatcagaatgatgctggcctcataaaatgagttagggaggattccctctttttctattgattggaatagtttcagaaggaatggtaccagttcctccttgtacctctggtagaattcggctgtgaatccatctggtcctggactctttttggttggtaaactattgattattgccacaatttcagagcctgttattggtcgattcagagattcaacttcttcctggtttagtcttgggagagtgtatgtgtcgaggaatgtatccatttcttctagattttctagtttatttgcgtagaggtgtttgtagtattctctgatggtagtttgtatttctgtgggatcggtggtgatatcccctttatcattttttattgtgtctatttgattcttctctctttttttttttattagtcttgctagcggtctatcaattttgttgatcctttcaaaaaaccagctcctggattcattgattttttgaagggttttttgtgtctctatttccttcagttctgctctgattttagttatttcttgccttctgctagcttttgaatgtgtttgctcttgcttttctagttcttttaattgtgatgttagggtgtcaattttggatctttcctgctttctcttgtaggcatttagtgctataaatttccctctacacactgctttgaatgcgtcccagagattctggtatgtggtgtctttgttctcgttggtttcaaagaacatctttatttctgccttcatttcgttatgtacccagtagtcattcaggagcaggttgttcagtttccatgtagttgagcggctttgagtgagattcttaatcctgagttctagtttgattgcactgtggtctgagagatagtttgttataatttctgttcttttacatttgctgaggagagctttacttccaactatgtggtcaattttggaataggtgtggtgtggtgctgaaaaaaatgtatattctgttgatttggggtggagagttctgtagatgtctattaggtctgcttggtgcagagctgagttcaattcctgggtatccttgttgactttctgtctcgttgatctgtctaatgttgacagtggggtgttaaagtctcccattattaatgtgtgggagtctaagtctctttgtaggtcactgaggacttgctttatgaatctgggtgctcctgtattgggtgcataaatatttaggatagttagctcctcttgttgaattgatccctttaccattatgtaatggccttctttgtctcttttgatctttgttggtttaaagtctgttttatcagagactaggattgcaacccctgcctttttttgttttccattggcttggtagatcttcctccatccttttattttgagcctatgtgtgtctctgcacgtgagatgggtttcctgaatacagcacactgatgggtcttgactctttatccaacttgccagtctgtgtcttttaattgcagaatttagtccatttatatttaaagttaatattgttatgtgtgaatttgatcctgtcattatgatgttagctggtgattttgctcattagttgatgcagtttcttcctagtctcgatggtctttacattttggcatgattttgcagcggctggtaccggttgttcctttccatgtttagcgcttccttcaggagctcttttagggcaggcctggtggtgacaaaatctctcaacatttgcttgtctataaagtattttatttctccttcacttatgaagcttagtttggctggatatgaaattctgggttgaaaattcttttctttaagaatgttgaatattggcccccactctcttctggcttgtagggtttctgccgagagatccgctgttagtctgatgggctttcctttgagggtaacccgacctttctctctggctgcccttaacattttttccttcatttcaactttggtgaatctgacaattatgtgtcttggagttgctcttctcgaggagtatctttgtggcgttctctgtatttcctgaatctgaacgttggcctgccttgctagattggggaagttctcctggataatatcctgcagagtgttttccaacttggttccattctccacatcactttcaggtacaccaatcagacgtagatttggtcttttcacatagtcccatatttcttggaggctttgctcatttctttttattcttttttctctaaacttcccttctcgcttcatttcattcatttcatcttccattgctgataccctttcttccagttgatcgcatcggctcctgaggcttctgcattcttcacgtagttctcgagccttggttttcagctccatcagctcctttaagcacttctctgtattggttattctagttatacattcttctaaatttttttcaaagttttcaacttctttgcctttggtttgaatgtcctcccgtagctcagagtaatttgatcgtctgaagccttcttctctcagctcgtcaaaatcattctccatccagctttgttctgttgctggtgaggaactgcgttcctttggaggaggagaggcgctctgcgttttagagtttccagtttttctgttctgttttttccccatctttgtggttttatctacttttggtctttgatgatggtgatgtacagatgggttttcggtgtagatgtcctttctggttgttagttttccttctaacagacaggaccctcagctgcaggtctgttggaataccctgccgtgtgaggtgtcagtgtgcccctgctggggggtgcctcccagttaggctgctcgggggtcaggagtcagggacccacttgaggaggcagtctgcccgttctcagatctccagctgcgtgctgggagaaccactgctctcttcaaagctgtcagacagggacacttaagtctgcagaggttactgctgtctttttgtttgtctgtgccctgcccccagaggtggagcctacagaggcaggcaggcctccttgagctgtggtgggctccacccagttcgagcttcccggctgctttgtttacctaagcaagcctgggcaatggcgggcgcccctcccccagcctcgttgccgccttgcagtttgatctcagactgctgtgctagcaatcagcgagattccgtgggcgtaggaccctccgagccaggtgtgggatatagtctcgtggtgcgccgtttcttaagccggtctgaaaagcgcaatattcgggtgggagtgacccgattttccaggtgcgtccgtcacccctttctttgactcggaaagggaactccctgaccccttgcgcttcccaggtgaggcaatgcctcgccctgcttcggctcgcgcacggtgcgcacacacactggcctgcgcccactgtctggcactccctagtgagatgaacccggtacctcagatggaaatgcagaaatcaccgtcttctgcgtcgctcacgctgggagctgtagaccggagctgttcctattcggccattttggctcctcccc e canFam3.chr19 50620607 619 + 53741614 I e panTro4.chr2B 153145323 0 + 247518478 C e nomLeu3.chr20 82299370 0 - 85365473 C e macFas5.chr12 37616951 0 + 132586672 C e ponAbe2.chr2b 38348302 0 + 135000294 C e calJac3.chr6 87857139 0 - 158406734 C e mm10.chr2 49707093 0 + 182113224 C e chlSab2.chr10 34370719 1160 + 128595539 I e papAnu2.chr12 11274218 0 + 104110932 C e rheMac3.chr12 11912697 0 + 106825570 C a score=40957.000000 s hg38.chr2_GL582966v2_alt 29986 16 + 96131 gtatctggcttctttc s panTro4.chr2B 153145323 16 + 247518478 gtatctggcttctttc i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38348302 16 + 135000294 gtatctggcttctttc i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82299370 16 - 85365473 gtatctggcttctttg i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11912697 16 + 106825570 gtatctggcttctttc i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37616951 16 + 132586672 gtatctggcttctttc i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11274218 16 + 104110932 gtatctggcttctttc i papAnu2.chr12 C 0 C 0 s calJac3.chr6 87857139 16 - 158406734 gtatctggcttctttc i calJac3.chr6 C 0 C 0 e canFam3.chr19 50620607 619 + 53741614 I e mm10.chr2 49707093 0 + 182113224 C e chlSab2.chr10 34370719 1160 + 128595539 I a score=1088301.000000 s hg38.chr2_GL582966v2_alt 30002 431 + 96131 atacagcgttttatctgtgaacttcatctacattgttaggtgtagtagtagttcatttttcacagttatatagtattctattgtatgaatatggcttataggtatccattctattgttgatggatatttggattattttcatgttggggtgattataaataaagttactatgacattggttgtcatgcctttgggtgaatatatgtcctcatttctgttaggtg--ggagcaggtcataaggtgtgaaatattctactttagtagatactactaaagatttttccaaaacgacagtaataattcacactctctccagtagtagttgactgttatagtcattgctcattctcagcaacagttggcattatcagttttaaattttttagccattctattgggtgtgggaaggtatctcattgtagttttaatttg s panTro4.chr2B 153145339 431 + 247518478 atgcagcgttttatctgtgaacttcatctacattgttaggtgtagtagtagttcatttttcacagttatatagtattctattgtatgaatatggcttataggtatccattctattgttgatggatatttggattattttcatgttggggtgattataaataaagttactatgacattggttgtcatgcctttgggtgaatatatgtcctcatttctgttaggtg--ggagcaggtcataaggtgtgaaatattctactttagtagatactactaaagatttttccaaaacgacagtaataattcacactctctccagtagtagttgactgttatagtcattgctcattctcagcaacagttggcattatcagttttaaattttttagccattctattgggtgtgtgaaggtatctcattgtagttttaatttg i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38348318 431 + 135000294 atgcagggttttatctgtgaacttcatttacattgttaggtgtagtagtagttcatttttcacagttatatagtattctattgtatgaatatggcttatacgtatccattctattgttgatggatatttggattattttcattttggggtgattataaataaagttattatgacattggttgtcatgcctttgggtgaatatatgtcctcatttctgttaggtg--ggagcaggtcataaggtgtgaaatattctactttagtagatactactaaagatttttctaaaacgacagtaataattcacactctgtccagtagcagttgactgttatagtcattgctcattctcagcaacagttggcattatcagttttaaattttttagccattctattgggtgtgttaaggtatctcattgtagttttaatttg i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82299386 431 - 85365473 atgcagtgttttatctgtgaacttcatctacattgttaggtgtagtagtagttcatttttcacagttatatagtattctatggtatgaatatggcttatatgtatccattctattgttgatggatatttggattattttcatgttggggtgattataaataaagttactatgacattggttgtcatgcctttgggtgaatatatgtccttatttctgttaggtg--ggagcaggtcataaggtgtgaaatattgtaccttagtagatactactaaggatttttccaaaataacagtaataattcacactctctccagtagcagttgactgttatagtcattgctcattctcagcaacagttggcattatcagttttaaattttttagccattctattgggtgtgttaaggtatctcattgtagttttaatttg i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11912713 431 + 106825570 atgcagcgttttatgtgtgaacttcatctacattgttaggtgtagtagcagtttatttttcacagttatatagtattctgttgtattaatatggcttatatgtatccattctactgttgatggatatttggattattttcattttggggtgattataaataaagttactatgacattggttgtcatgcctttgggtgaatatatgtcctcatttctgttaggtg--ggagcgggtcataaggtgtgaaatattctactttagtagatactactaaagatttttccagaacgacagtaataattcacagtctctccagcagcagttgactgttacagtcattgctcattctcagcaactgttggcattatcggtttcaaattttttagccattctgttgggtgtgttaaggtatctcattgtagttttaattta i rheMac3.chr12 C 0 I 9 s macFas5.chr12 37616967 431 + 132586672 atgcagcgttttatgtgtgaacttcatctacattgctaggtgtagtagcagtttatttttcacagttatatagtattctgttgtattaatatggcttatatgtatccattctactgttgatggatatttggattattttcattttggggtgattataaataaagttactatgacattggttgtcatgcctttgggtgaatatatgtcctcatttctgttaggtg--ggagcgggtcataaggtgtgaaatattctactttagtagatactactaaagatttttccagaacgacagtaataattcacagtctctccagcagcagttgactgttacagtcattgctcattctcagcaactgttggcattatcggtttcaaattttttagccattctgttgggtgtgttaaggtatctcattgtagttttaattta i macFas5.chr12 C 0 I 2 s papAnu2.chr12 11274234 431 + 104110932 atgcaGCATTTTATGTGTGAACTTCATCTACATTGTTAGGTGTAGTAGcagtttatttttcacagttatatagtattctgttgtatgaataTGGCTTATATgtatccattctactgttgatggatatttggattattttcattttggggtGATTATAAATAAAGTTACTACGACATTGGTTGTCATGCCTTTGGGTGAATATATATCCTCATTTCTGTTAGGTG--GGAGCGGGTCATAAGGTGTGAAATATTCTACTTTAGTAGATACTACTAAAGATTTTTCCAGAACGACAGTAATAATTCACAGTCTCTCCAGCAGCAGTTGACTGTTACAGTCATTGCTCATTCTCAGCAACTGTTGGCATTATCGGTTTCAAATTTTTTAGCCATTCTGTTGGGTGTGTtaaggtatctcattgtagttttaattta i papAnu2.chr12 C 0 I 2 s calJac3.chr6 87857155 431 - 158406734 atgcagcattttatctgtgaacttcacctaggttcttaggtatagtggtcgtctatttttcacagttatatagtattctgttgtatgaatatggcttatatgtatccattctattgttgatggatatttagattattttcatttaggggagattataaatacaattactatgacattggttgtcatgactttgggtgaatatttgtccttgtttctgttgggtg--ggagcatgtcttaaggtgtgaaatattctgctttagtagatactactaaagattctcccaaaatgacagtaataattcacactcttctcagtagcagttgactgttacagtcattgctcattctcaagaacagttggcattatcagttttaaattttttagccattctattgggtatgttaaggtttcttattgtagttttaatttg i calJac3.chr6 C 0 C 0 s mm10.chr2 49707093 354 + 182113224 atgcatcattgtatctg-gaaattatttcacactgttgggc---gtagcagtttagtgtttatagttatgcagtattctattgaat---------------gtattcattgtactgttggtaggtgttt-gactgctttcatttaggggctattGCAA-------TAACATTACAGTGTCTGT--TGCCTGTGGAT--ATACCTGT---------TGATAAGTGTAGATATGAGTCATGGGGTGTGGCATAGT----TATAGCAGACGCTACAAACCACTTTTCTAAAGTTACAGTTAGGACCTATACTC---ACAGCAGGCGGTCAGAGGTAAGGTCGCTGCCCTTTCTCA----------------------------CTGCCAGCCCTTCTGGTGGGCACAGAAAGGCATCTCAT--CAGTTCCCTTT-- i mm10.chr2 C 0 C 0 e canFam3.chr19 50620607 619 + 53741614 I e chlSab2.chr10 34370719 1160 + 128595539 I a score=2275.000000 s hg38.chr2_GL582966v2_alt 30433 10 + 96131 -cattccc-tga s panTro4.chr2B 153145770 10 + 247518478 -cattctc-tga i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38348749 10 + 135000294 -cattccc-tga i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82299817 10 - 85365473 -cattctc-tga i nomLeu3.chr20 C 0 C 0 s macFas5.chr12 37617400 7 + 132586672 -cattatt---- i macFas5.chr12 I 2 C 0 s papAnu2.chr12 11274667 7 + 104110932 -CATTATT---- i papAnu2.chr12 I 2 C 0 s calJac3.chr6 87857586 11 - 158406734 -catttccctga i calJac3.chr6 C 0 C 0 s mm10.chr2 49707447 10 + 182113224 CCGTCCCC-CA- i mm10.chr2 C 0 C 0 e canFam3.chr19 50620607 619 + 53741614 I e chlSab2.chr10 34370719 1160 + 128595539 I e rheMac3.chr12 11913144 9 + 106825570 I a score=651207.000000 s hg38.chr2_GL582966v2_alt 30443 254 + 96131 aggctaatgatgttaaacaccttttcaggaggtgttttattggcacttcttttataaagtgcctgttccaagtctttgcccagttttttcttattgatttaaagcagttattttgggtaagtcctttgtcaggtatatgtattttatatatcttctcccaccttgt-aacttgccttttaactgtcttaatggtggcttctaatgaagacaagtttttaattttaatgaagtcaaatttattttttcttttatgt s panTro4.chr2B 153145780 254 + 247518478 aggctaatgatgttaaacaccttttcaggaggtgttttattggcacttcttttataaagtgcctgttccaagtctttgcccagttttttcttattgatttaaagcagttattttgggtaagtcctttgtcaggtatatgtattttatatatcttctcccaccttgt-aacttgccttttaactgtcttaatggtggcttctaatgaacacaagtttttaattttaatgaagtcaaatttattttttcttttatgt i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38348759 254 + 135000294 aggctaatgatgttaaacaccttttcaggaggtgttttattggcacttcttttataaagtgcttgttccaagtctttgcccagttttttcttattgatttaaaggagttattttgggtaagtcctttgtcaggtatatgtattttatatatcttctcccaccttgt-aacttgccttttaactgtcttaatggtggcttctaatgaagacaagtttttaattttaataaagtcaaatttattttttcttttatgt i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82299827 254 - 85365473 gggctaatgatgttaaacaccttcccaggagatgttttattggcacttcttttataaagtgcctgttccaagtctttgcccagttttttcttattgatttaaaggagttattttgggtaagtcctttgtcaagtgtatgtattttatatatcttctcccaccttgt-aacttgccttttaactgtcttaatggtggcttctaatgaagacaaatttttaattttaatgaagtcaaatttattttttctattatgt i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11913153 254 + 106825570 aggctaataatgttaaacacctttttaggaggtgttttattggcacttcttttataaagtgcctgttgcaagtctttgcccagttttttcttattgatttaaaagagttattttgggtaagtcctttgtcaggtatatgtattttatatatcttctcccaccttgt-aacttgccttttaactctcttaattgtggcttctaatgaagacaggtttttaattttaatgaagtcacatttattttttcttttatgt i rheMac3.chr12 I 9 C 0 s macFas5.chr12 37617407 254 + 132586672 aggctaataatgttaaacacctttttaggaggtgttttattggcacttcttttataaagtgcctgttgcaagtctttgcccagttttttcttattgatttaaaagagttattttgggtaagtcctttgtcaggtatatgtattttatatatcttctcccaccttgt-aacttgccttttaactctcttaattgtggcttctaatgaagacaggtttttaattttaatgaagtcacatttattttttcttttatgt i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11274674 254 + 104110932 AGGCTAATAATGTTAAACACCTTTTTAGGAGGTGTTTTATTGGCACTTCTTTTATAAAGTGCCTGTTGCAAGTCTTTGCCcagttttttcttattgatttaaaaGAGTTATTTTGGGTAAGTCCTTTGTCaggtatatgtattttatatatcttcTCCCACCTTGT-AACTTGCCTTTTAACTCTCTTAATTGTGGCTTCTAATGAAgacaggtttttaattttaatgaagtcacatttattttttcttttatgt i papAnu2.chr12 C 0 C 0 s calJac3.chr6 87857597 254 - 158406734 aggctgatgacattaaacacattttcaggaggtgttttatttgtacgtcttttatgaagtgcctgttccaagtctttgcccagatttttcttactgatttaaaggagttattctgggtaaatcctttgtgaggtatatgtatttgatatatcttctcccactttgt-aacttgccttttaactcttttaatggctacttttaatgaagagaggtttttaattttaatgaagtcaaatttattttttcttttatgc i calJac3.chr6 C 0 C 0 s mm10.chr2 49707457 226 + 182113224 GAACTAAGGATCTAGTGTTCTTTTT---GCAGTGCATC-TTGGCActtccttcaggaactgcctatt-caagtctttttctgctttttccttcttgatttgtgggagttattccagctaa-----ctgctatctatatgtatttta-gtaccttcccctgttttacaaacatgcctttttaatcct---------acttttagtgaggg-aagttttaaatt----tatagtcaa----tttttttcttttatgt i mm10.chr2 C 0 C 0 e canFam3.chr19 50620607 619 + 53741614 I e chlSab2.chr10 34370719 1160 + 128595539 I a score=391865.000000 s hg38.chr2_GL582966v2_alt 30697 178 + 96131 tctatttaagaaatctttggccaggcacggtggctcatgcctgcaatcccagcactttgggaggttgaggtaggcggatcaccagaggtcaggattttgagaccagcctggccaacatggtgaaaccctgtctctactaaaaatac-aaaaaaattagctgggcgtggt----ggcgggcgcc s panTro4.chr2B 153146034 178 + 247518478 tctatttaagaaatctttggccaggcacggtggctcatgcctgcaatcccagcactttgggacgttgaggtgggcggatcaccagaggtcaggattttgagaccagcctggccaacatggtgaaaccctgtctctactaaaaatac-aaaaaaattagctgggcgtggt----ggcgggcgcc i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38349013 183 + 135000294 tctatttaagaaatctttggccaggcacagtggctaatgcctgcaatcccagcactttgggaggctgaggtgggcggatcaccagaggtcaggagtttgagaccagcctggccaacatggcgaaaccccgtctctactaaaaatacaaaaaaaaatagccaggcgtggtgcacggtgggcgcc i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82300081 179 - 85365473 tctatttaagaaatctttggccaggcatggtggctcatgcctgcaatcccagcactttgggaggctgaagtgggcggatcaccagaggtcaggagtttgagaccagtctggccaacatggcgaaaccccgtctctactaaaaatacaaaaaaaattagccaggcgtggt----ggcgggcgcc i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11913407 176 + 106825570 tttatttaagaaatctttggccaggcacggtggctcatgcctgcaatcccagcgctttgggaggctgaggcaggtggatcacctgaggtcagaagtttgggaccatcctggccaacatggcaaaaccccatcactactaaaaatac---aaaaattagccaggcatggt----ggcatgcatc i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37617661 176 + 132586672 tttatttaagaaatctttggccaggcacggtggctcatgcctgcaatcccagcgctttgggaggctgaggcaggtggatcacctgaggtcaggagtttgggaccatcctggccaacatggcaaaaccccatcactactaaaaatac---aaaaattagccaggcatggt----ggcatgcatc i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11274928 176 + 104110932 tttatttaagaaatctttggccaggcacggtggctcatgcctgcaatcccagcgctttgggaggctgaggcaggtggatcacctgaggtcaggagtttgggaccatcctggccaacatggcaaaaccccatcactactaaaaatac---aaaaattagccaggcatggt----ggcatgcacc i papAnu2.chr12 C 0 C 0 s calJac3.chr6 87857851 176 - 158406734 tctctttaaaaagcctttggccaggcacagtggctcatgcctgtaatcccagcactttgggaggccaaggtgggcagataacctgaggtcaggagtttgagaccagcctggccaacatggtgaaaccccatctctactaaaaatac---aaaaattagctgggtgtggt----ggcatgcacc i calJac3.chr6 C 0 C 0 e canFam3.chr19 50620607 619 + 53741614 I e mm10.chr2 49707683 0 + 182113224 C e chlSab2.chr10 34370719 1160 + 128595539 I a score=20006.000000 s hg38.chr2_GL582966v2_alt 30875 7 + 96131 tgtagtc s panTro4.chr2B 153146212 7 + 247518478 tgtagtc i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38349196 7 + 135000294 tgtagtc i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82300260 7 - 85365473 tgtagtc i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11913583 7 + 106825570 tgtaatc i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37617837 7 + 132586672 tgtaatc i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11275104 7 + 104110932 tgtaatc i papAnu2.chr12 C 0 C 0 s calJac3.chr6 87858027 7 - 158406734 tgtaatc i calJac3.chr6 C 0 C 0 s mm10.chr2 49707683 7 + 182113224 tgtattc i mm10.chr2 C 0 C 0 e canFam3.chr19 50620607 619 + 53741614 I e chlSab2.chr10 34370719 1160 + 128595539 I a score=279119.000000 s hg38.chr2_GL582966v2_alt 30882 117 + 96131 ccagctactcgggaggctgaggcaggagaatcacttgaacccgggaggcagaggttgcagtgagccgagattgtgccactgcactccagcctgggcaacagagtgagactctgtct-c s panTro4.chr2B 153146219 117 + 247518478 ccagctactcgggaggctgaggcaggagaatcgcttgaacccgggaggcagaggttgcagtgagccgagattgtgccactgcactccagcctgggcaacagagtgagactctgtct-c i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38349203 117 + 135000294 ccagctactcgggaggctgaggcaggagaatagcttgaatccgggaggcggaggttgcagtgagccgagattgtgccactgcattccaacctgggcaatagagtgagactctgtct-c i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82300267 117 - 85365473 ccagctactcgggaggctgaggcaggagaatcgcttgaacccaggaggcggaggttgcagtgagccgagattgtgccactgcactccagcctgggcaacacagtgagactctgact-c i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11913590 117 + 106825570 ccagctactttggaggctgagacaggagaatcgcttgaacccgggaggcagagattgcagtgagccgagatcgtgccactgcactccaacctgggcaacagagtgagactctgtct-c i rheMac3.chr12 C 0 I 6 s macFas5.chr12 37617844 118 + 132586672 ccagctactttggaggctgagacaggagaatcgcttgaacccgggaggcagagattgcagtgagccgagatcgtgccactgcactccaacctgggcaacagagtgagactctgtctcc i macFas5.chr12 C 0 I 6 s papAnu2.chr12 11275111 117 + 104110932 ccagctactttggaggctgagacaggagaattgcttgaacccgggaggcagagattgcagtgagccgagatcgtgccactgcactccaacctgggcaacagagtgagactctgtct-c i papAnu2.chr12 C 0 I 6 s calJac3.chr6 87858034 117 - 158406734 tcagctacttgggaggctgaggcaggagagtcgcttgaacctgagaggcggaggttgcagtgagccaagatcatgctactgcactccagcctgggcaagagagtgagactctgttt-c i calJac3.chr6 C 0 C 0 e canFam3.chr19 50620607 619 + 53741614 I e mm10.chr2 49707690 0 + 182113224 C e chlSab2.chr10 34370719 1160 + 128595539 I a score=11457.000000 s hg38.chr2_GL582966v2_alt 30999 6 + 96131 aaaaaa s panTro4.chr2B 153146336 6 + 247518478 aaaaaa i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38349320 6 + 135000294 aaaaaa i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82300384 6 - 85365473 aaaaaa i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11913713 6 + 106825570 aaaata i rheMac3.chr12 I 6 C 0 s macFas5.chr12 37617968 6 + 132586672 aaaata i macFas5.chr12 I 6 C 0 s papAnu2.chr12 11275234 6 + 104110932 aaaaca i papAnu2.chr12 I 6 C 0 s chlSab2.chr10 34371879 6 + 128595539 aaaaca i chlSab2.chr10 I 1160 C 0 e canFam3.chr19 50620607 619 + 53741614 I e calJac3.chr6 87858151 0 - 158406734 C e mm10.chr2 49707690 0 + 182113224 C a score=1059629.000000 s hg38.chr2_GL582966v2_alt 31005 360 + 96131 aaaaaaa-------------------ctttgcctaccccaaggtcttgaagatactgtcctatatttt-ctgtggaagctttattgttttacttttcacatttatgtctgggatctctctggaacagaattttttacatggtattgggggtgaggaataaagttccacttcccctcagtgccatgtattgaaaggactgccctttccactcttctctatggacacttttgtcata-agtcagatgactgtcatctgagtgcctgtttctggacaatttattc------tgtttttattccaagatttctgacaatttgatcagtttta------------ctttataagaaagtgatgatgttcaatcctctaactttgatcttcagaactgtccttgc s panTro4.chr2B 153146342 361 + 247518478 aaaaaaa------------------actttgcctaccccaaggtcttgaagatactgtcctatatttt-ctgtggaagctttattgttttacttttcacatttatgtctgggatctctctggaacagaattttttacatggtattgggggtgaggaataaatttccacttcccctcagtgccatgtattgaaaggactgccctttccactcttctctatggacactttcatcata-agtcagatgactgtcatctgagtgcctgtttctggacaatttattc------tgtttttattccaagatttctgacaatttgatcagtttta------------ctttataagaaagtgatgatattcaatcctctaactttgatcttcagaactgtccttgc i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38349326 369 + 135000294 aaaaaaaaaaca---------aaaaactttgccta-cccaaggtcttgaagatactgtcctatatttt-ctgtagaagctttattgttttacttttcacatttatttctgggatctctctgaaacagaattttttacatggtattgggggtgggggataaagttccacttcccctcagtaccatgtattgaaaggactgccctttccactcttctctatggacactttcgtcata-agtcagatgactgtcatctgagtgcctgtttctggacaatttattc------tgtttttattccaacatttctgacaatttgatcagtttta------------ctttgtaagaaagtgatgatatccagtcctctaactttgatcttcagaactgtccttgc i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82300390 371 - 85365473 caaaaacaaaaac--------aaaaactttgcctaccccaaggtcttgaagatactgtcttatatttt-ctgtagaagctttaatgttttacttttcacatttatgtctgggatctctctggaacagaattttttacatggtattgggggtgggggataaagttccacttcccctcagtaccatgtattgaaaggactgccccttccactcttctctatggacactttcatcata-agtcagatgactgtcatctgagtgcctgtttctggacaatttattc------tgtttttattccaacgcttctgacaatttgatcagtttta------------gtttataagaaagtgatgatattcagtcctctaactttgatcttcagaactgtccttgc i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11913719 379 + 106825570 aataaataaataaatttttaaaaaaactttgcctacaccaaggtcttgaagatactgtcctatatttt-ctctagaagctttattgttttacttttcacatttatgtctgggatctctctggaacagaattttttacatggtattgggggtgggggataaagttccgcttcccctcagtacccagtattgaaaggactgccctttccactcttctttatgggcacttttgtcata-agtcagatgactgtcctctgagtgcctgtttctggacagtttattc------tgtttttattccaatgtttctgacaatttgatcagtttta------------ctttataagaaagtgttggtattcaatcctctgactttgatcttcagaactgaccttgc i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37617974 379 + 132586672 aataaataaataaatttttaaaaaaactttgcctacaccaaggtcttgaagatactgtcctatatttt-ctctagaagctttattgttttacttttcacatttatgtctgggatctctctggaacagaattttttacatggtattgggggtgggggataaagttccgcttcccctcagtacccagtattgaaaggactgccctttccactcttctttatgggcacttttgtcata-agtcagatgactgtcctctgagtgcctgtttctggacagtttattc------tgtttttattccaatgtttctgacaatttgatcagtttta------------ctttataagaaagtgttggtattcaatcctctgactttgatcttcagaactgaccttgc i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11275240 379 + 104110932 acaacaacaacaaaaaaaaaacaaaactttgccTACACCAAGGTCTTGAAGATACTGTCCTATATTTT-CTCTAGaagctttattgttttacttttcacatttatGTCTGGGATCTCTCTGGAACAGAATTTTTTACATGGTATTGGGGGTGGGGGATAAAGTTCCGCTTCCCCTCAGTACCCAGTATTGAAAGGACTGCCCTTTCCACTCTTCTTTATGGGCACTTTTGTCATA-AGTCAGATGACTGTCCTCTGAGTGCCTGTTTCTGGAcagtttattc------tgtttttattccaatGTTTCTGACAATTTGATCAGTTTTA------------CTTTATAAGAAAGTGTTGGTATTCAATCCTCTGACTTTCATCTTCAGAACTGACCTTgc i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34371885 360 + 128595539 -------------------aaaaaaactttgcctacgccaagatcttgaagatactgtcctatatttt-ctctagaagctttattgttttacttttcacatttatgtctgggatctctctggaacagaattttttacatggtattgggggtgggggataaagttctgcttcccctcagtacccagtattgaaaggacggccctttccactcttctttatgggcacttttgtcata-agttagatgactgtcctctgagtgcgtgtttctggacagtttattc------tgtttttattccaatgtttctgacaatttgatcagtttta------------ctttataagaaagtgttagtattcaatcctctgactttgatcttcagaactgaccttgc i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87858151 364 - 158406734 ----------------aagaaacaatctttgcctaccctgaggtcttgaagatactgtcctatatttt-ctctagaagctttattgtcttacttttcacatttatgtctgggatctctctggaatagaattttttatatggcattggggctgggggataaagttccccttcccctcactaccatatattgaggggactgcccttcccactcttctctatgggtacttt-gtcatatggtcagatggctgtcatctgagtgcctgtttctggataa-----------------tttattccaaagtttgtgacaatttgatcaggtataatttataagtggctttataagtaagtgttgatactcagtcctctaactttgatcttcagaactgtccttgc i calJac3.chr6 C 0 C 0 s mm10.chr2 49707690 294 + 182113224 -------------------aagaaatctttacctaacacaaggtcttgaggatatt-ttcagtattttgctttagacattttaccatttt--------cacctat------gatgcatcaggaatagaa-ttcttatgtGGAGTTTTGTTTTG----------TTTGTTTGTTTTTTTAACTGTACATTGAAAGGACTA-TGTCCCTGCTCTGTGGTATGAGAACTTC--CCATA-CATCAGATGGCAGTGGTGTGAGTTTCTG--TCTGGATCATTTATTCAGGCTATGTAATCACTTTAAGGATTATGG-----------------------------CTTTCTAAGTA-------------------------CTGATATTCATATGTATGCATGC i mm10.chr2 C 0 I 44 e canFam3.chr19 50620607 619 + 53741614 I a score=109168.000000 s hg38.chr2_GL582966v2_alt 31365 41 + 96131 tattc---------ttttttttttcatttctattataaatttcagaatca s panTro4.chr2B 153146703 40 + 247518478 tattc---------ttttttttt-catttctattataaatttcagaatca i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38349695 44 + 135000294 tattcttg------ttttttttttcatttctattataaatttcagaatca i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82300761 50 - 85365473 tgttcttgttttttttttttttttcatttctattataaatttcagaatca i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11914098 45 + 106825570 tattcttgt-----ttttgtttttcatttctattataaatttcagagtca i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37618353 45 + 132586672 tattcttgt-----ttttgtttttcatttctattataaatttcagagtca i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11275619 45 + 104110932 tattcttgt-----ttttgtttttcatttctattataaaTTTCAGAGTCA i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34372245 45 + 128595539 tcttcttgt-----ttttgtttttcatttctattataaatttcagaatca i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87858515 42 - 158406734 tgttcg--------ttgtctttttcatttctattgtaaatttcagaatca i calJac3.chr6 C 0 C 0 e canFam3.chr19 50620607 619 + 53741614 I e mm10.chr2 49707984 44 + 182113224 I a score=732249.000000 s hg38.chr2_GL582966v2_alt 31406 246 + 96131 gcttgccaatttctat-acacatacacaaaccccttagggttttttt--------gggggaaggtgg----ggattactttaattctctagagcaattttaggagaattaacatctttCTCTCTCAGTGTAAGCTGATTTTTTCATATTCTACCTTTAGTGGATGTGAAGGCCC-CGCTTGCCCCATTTGGGCTGAATGAAGTCTC--GGGCTCCAGTGTGAGACACAGATTCCCACTGTTATTTGAGTTCCAAATGGAAGT s panTro4.chr2B 153146743 246 + 247518478 gcttgccaatttctat-acacatacacaaaccccttagggttttttt--------gggggaaggtgg----ggattactttaattctctagagcaattttaggagaattaacatctttCTCTCTCAGTGTAAGCTGATTTTTTCATATTCTACCTTTAGTGGATGTGAAGGCCC-CGCTTGCCCCATTTGGGCTGAATGAAGTCTC--GGGCTCCAGTGTGAGACACAGATTCCCACTGTTATTTGAGTTCCAAATGGAAGT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38349739 246 + 135000294 gcttgccaatttctat-acacatacacaaaccccttagggttttttt--------gggggaaggtgg----ggattactttaattctctagaacaattttaggagaattaacatctttCTCTCTcagtgtaagctgattttttcatattctaccttcagtggatgtgaagGTCC-CGCTTGCCCCATTTGGGCTGAATGAAGTCTC--GGGCTCCAGTGTGAGACACGGATTCCCACTGTTATTTGAGTTCCAAATGGAAGT i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82300811 246 - 85365473 gcttgccaatttctat-acacatacacaaaccccttagggttttttg--------gggggaaggtgg----ggattactttaattttctagaacaattttaggagaattaacatctttCTCTCTCAGTGTAAGCTGATTTTTTCATATTCTACCTTTAGTGGATATGAAGGTCC-CGCTTGCCCCATTTGGGCTGAATGAAGTCTC--GGGCTCCAGTGTGAGACACGGATTCCCACTGTTACTTGAGTTCCAAATGGAAAT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11914143 242 + 106825570 gctagccaatttgtataacacatacagaagccccttagggttttctt--------gggggaaggtgg----ggattac-ttaattctctagaacaattttaggagaattaaca----tctttCTCAGTGTAAGCTGATTTTTTCATATTCTACCTTTAGTGGATGTAAAAGCCC-CGCTTGCCCCATTTGGGCTGAATGAAGTCTC--GGGCTCCAGCGTGAGCCACGGATTCCCACTGTTATTTGAGTTCCAAAGGGAAGT i rheMac3.chr12 C 0 I 318 s macFas5.chr12 37618398 242 + 132586672 gctagccaatttgtataacacatacagaagccccttagggttttctt--------gggggaaggtgg----ggattac-ttaattctctagaacaattttaggagaattaaca----tctttCTCAGTGTAAGCTGATTTTTTCATATTCTACCTTTAGTGGATGTAAAAGCCC-CGCTTGCCCCATTTGGGCTGAATGAAGTCTC--GGGCTCCAGCGTGAGCCACGGATTCCCACTGTTATTTGAGTTCCAAAGGGAAGT i macFas5.chr12 C 0 I 398 s papAnu2.chr12 11275664 247 + 104110932 GCTAGCCAATTTGTATAACACATACAGAAGCCCCTTAGGGTTTTCTT--------GGGGGAAGGTGG----GGATTACTTTAATTCTCTAGAACAATTTTAGGAGAATTAACATCTTTCTTTCTCAGTGTAAGCTGATTTTTTCATATTCTACCTTTAGTGGATGTAAAAGCCC-CGCTTGCCCCATTTGGGTTGAATGAAGTCTC--GGGCTCCAGCGTGAGCCACGGATTCCCACTGTTATTTGAGTTCCAAAGGGAAGT i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34372290 243 + 128595539 gctagccaatttgtataacacatacagaagccccttagtgttttctt--------gggggaaggtgg----ggattactttaattctctagaacaattttaggagaattaaca----tctttCTCAGTGTAAGCTGATTTTTTCATATTCTACCTTTAGTGGATGTAAAAGCCC-CGCTTGCCCCATTTGGGCTGAATGAAGTCTG--GGGCTCCAGCGTGAGCCACGGATTCCCACTGTTATTTGAGTTCCAAAGGGAAGT i chlSab2.chr10 C 0 I 332 s calJac3.chr6 87858557 257 - 158406734 gcttgtcattttctat-acacatacacaaacctcttagggtgtttttctttggccggggggcgggggcagaggattactttaattctctagaacaattttaggagaattaacatctttCTCTAGCAATGCAAGCTGATTTCTTCATATTCTACCTTTAGT-GATCTAAAGGCCC-CGCCTGTCACATTTGGGCTGAATGAAGTTTC-AGGGCTCTAGGGTTGGACATGGATTCTCACT-TTATTTGAATTCCAAATGGAAGT i calJac3.chr6 C 0 C 0 s mm10.chr2 49708028 241 + 182113224 acacacacacacacac-acacacacacacacGCTCTCTCTCTCTCTC--------TCTAAGATATGG----GAGATAACTTAAATCTATGGAGCCATTTTGGTAGAGTCA-------TCTCTCTTTTTCTTAGCTCATTTCTCCATCCCCTGGCCTCAGGGGATGTAAAAGTTTGCTCAAGTCCCATCTGGAGCAGAGAAAATCTATAAGGATCCAGCGTGAGA-GTGTTTTCCTACCGTGGCTTGAGCACCAGGCCAGAGT i mm10.chr2 I 44 C 0 e canFam3.chr19 50620607 619 + 53741614 I a score=29739.000000 s hg38.chr2_GL582966v2_alt 31652 8 + 96131 TGGGTTGC s panTro4.chr2B 153146989 8 + 247518478 TGGGTTGC i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38349985 8 + 135000294 TGGGTTGT i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82301057 8 - 85365473 TGGGTTGC i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11914703 8 + 106825570 TGGGTTGC i rheMac3.chr12 I 318 C 0 s macFas5.chr12 37619038 8 + 132586672 TGGGTTGC i macFas5.chr12 I 398 C 0 s papAnu2.chr12 11275911 8 + 104110932 TGGGTTgc i papAnu2.chr12 C 0 I 284 s chlSab2.chr10 34372865 8 + 128595539 TGGGTTGC i chlSab2.chr10 I 332 C 0 s calJac3.chr6 87858814 8 - 158406734 TGGGTTGT i calJac3.chr6 C 0 C 0 s mm10.chr2 49708269 7 + 182113224 -GGGTTAT i mm10.chr2 C 0 C 0 e canFam3.chr19 50620607 619 + 53741614 I a score=1593648.000000 s hg38.chr2_GL582966v2_alt 31660 524 + 96131 GCATCTTTAGCtactcctctggatcttttctgcaccatctctgtcctgctttgtgacttaggagggtgactggtttgggctcatgcaatgggctccttttcctctggcttccagttatgttacacccgtggggaaggaacacaggcaggcgatcagaaggagagaagagcgtgaggtccgggtatttatttcctggcttcttccctgccagatcattttgggttggctgtgtccctaccaatggctgtgacaattcatacctaccaggcaatcttttccttctagccttctctctctggctccccttcagcttaagggtagtaatggctccccagtccctaatgtgggtaccacattaacccttgttatttcccaacacctttccaaacctttgttaagcactcttcaaatcatgcaatttgagcaggtggtctgtttccttccaggaccccgattactacaGAAGTGG--------GGATTTCCTAGGCAATTGTTAAAAGTATTTTGAGAATGAGGACCAGTTACACCAA s panTro4.chr2B 153146997 524 + 247518478 GCATCTTTAGCtactcctctggatcttttctgcaccatctctgtcctgctttgtgacttaggagggtgactggtttgggctcatgcaatgggctccttttcctctggcttccagttatgttacacccgtggggaaggaacacaggcaggcgatcagaaggagagaagagcgtgaggtccgggtatttatttcctggcttcttccctgccagatcattttgggttggctgtgtccctaccaatggctgtgacaattcatacctaccaggcaatcttttccttctagccttctctctctggctccccttcagcttaagggtagtaatggctccccagtccctaatgtgggtaccacattaacccttgttatttcccaacacctttccaaacctttgttaagcactcttcaaatcatgcaatttgagcaggtggtctgtttccttccaggaccccgattactacaGAAGTGG--------GGATTTCCTAGGCAATTGTTAAAAGTACTTTGAGAATGAGGACCAGTTACACCAA i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38349993 523 + 135000294 GCATCTTTAGCtactcctctggatcttttctgta-cacctctgtcctgctctgtgacttaggagggtgactggtttgggctcatgcaatgggctccttttcctctggcttccagttatgttacacccgtggggaaggaacacaggcaggcgatcagaagacgagaagagcatgaggtccaggtatttatttcctggcttcctccctgccagatcattttgggttggttgtgtccctaccaatggctgttacaattcatacctaccaggcaatcttttccttctagccttctctctctggctccccttcagcttaagggtagtaatagctccccaatccctaatgtgggtaccacattaacccttgttatttcccagcacctttccaaatctttgttaagcactcttcaaatcatgcaatttgagcaggttgtctgtttccttccaggaccctgattactacaGAAGTGG--------GGATTTCCTAGGCAATTGTTAAAAGTACTTTGAGAATGAGGACCAGTTACACCAA i ponAbe2.chr2b C 0 I 604 s nomLeu3.chr20 82301065 523 - 85365473 ACATCTTTAGCtactcctctggatcttttctgtaccatctctgccctgctctgtgacttaggagggtgaccggtttgggctcatgcaatgggctccttttcctctggcttccagttacgttaaaccagtgaggaaggaacccaggcaggcgatcagaaggagagaagagcgtgaggtccaggtatttatttcctggcttcctccctgccagatca-tttgggttggctgtgtccctaccaatggctgttacaattcatacctaccaggcaatcttttccttctagccttctctctctggcttcccttcagcttaagggtagtaatggctccccaatccctaatgtgggtaccacattaacccttgttatttccccacacctttccaaacctttgttatgcactcttcaaatcatgcaatttgagcaggttgtctgtttcctgccaggaccctgattactacaGAAGTGG--------GGATTTCCTAGGCAATTGTTAAAAGTACTTTGAGAATGAGGACCAGTTACGCCAA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11914711 504 + 106825570 GCATCTTTAGCGActcctctggatcttttctgtgccatctctgccctgctctgtgacttaggagggtgactggtttgggctcatgcaatgggctccttttcctctggcttccagttatgtta--------------------aggcaggcaatcagaaggagagaagagcgtgaggttcaggtatttatttcctggcttcctccctgccagatcattttgggttagctgtgtccctaccaatggcggttacaattcatacctaccaggcaatcttttccttctagccttctctctctggctccccttcagcttaagggtagtaatggctcccccaaacctaatgtgggtaccacattaaccctcgttatttcccaacacctttccaaacctttgttaagcactctccaaatcatgcagttcacgcaggtcatctgtttcctgccaggaccctgattactacaGAAGTGG--------CGATTTTCTAGGCAATATTAAAAGGTACTTTGAGAATGAGGACCAGTTACACCAA i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37619046 504 + 132586672 GCATCTTTAGCGActcctctggatcttttctgtgccatctctgccctgctctgtgacttaggagggtgactggtttgggctcatgcaatgggctccttttcctctggcttccagttatgtta--------------------aggcaggcaatcagaaggagagaagagcgtgaggttcaggtatttatttcctggcttcctccctgccagatcattttgggttagctgtgtccctaccaatggcagttacaattcatacctaccaggcaatcttttccttctagccttctctctctggctccccttcagcttaagggtagtaatggctcccccaaacctaatgtgggtaccacattaaccctcattatttcccaacacctttccaaacctttgttaagcactctccaaatcatgcagttcacgcaggtcatctgtttcctgccaggaccctgattactacaGAAGTGG--------CGATTTTCTAGGCAATATTAAAAGGTACTTTGAGAATGAGGACCAGTTACACCAA i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11276203 524 + 104110932 GCATCTTTAGCGACTCCTCTGGATCTTTTCTGTGCCGTCTCTGCTCTGCTCTGTGACTTAGGAGGGTGACTGGTTTAGGCTCATGCAATGGGCTCCTTTTCCTCTGGCTTCCAGTTATGTTAAGCCAGTGGGGAAGGAACACAGGCAGGCGatcagaaggagagaagagcgtGAGGTTCAGGTATTTATTTCCTGGCTTCCTCCCTGCCAGATCATTTTGGGTTAGCTGTGTCCCTACCAATGGCGGTTACAATTCATACCTACCAGGCAATCTTTTCCTTCTAGCCTTCTCTCTCTGGCTCCCCTTCAGCTTAAGGGTAGTAATGGCTCCCCCAAACCTAATGTGGGTACCACATTAACCCTCGTTATTTCCCAACACCTTTCCAAACCTTTGTTAAGCACTCTCCAAATCATGCAATTCAAGCAGGTTATCTGTTTCCTGCCAGGACCCTGATTACTACAGAAGTGG--------CGATTTTCTAGGCAATATTAAAAGGTACTTTGAGAATGAGGACCAGTTACACCAA i papAnu2.chr12 I 284 C 0 s chlSab2.chr10 34372873 522 + 128595539 GCATCTTTAGCGACTC--CTGGATCTTTTCTGTGccatctctgccctgctctgtgacttaggagggtgactggtttgggctcatgcaatgggctccttttcctctggcttccagttatgttaagccagtggggaaggaacacaggcaggcgatcagaaggagagaagagcgtgaggttcaggtatttatttcctggcttcctccctgccagatcattttgggttagctgtgtccctaccaatggcggttacaattcatacctaccaggcaatcttttccttctagccttctctctctggctccccttcagcttaagggtagtaatggctcccccaaacctaatgtgggtaccacattaaccctcgttatttcccaacacctttccaaacctttgttaagcactctccaaatcatgcaattcaagcaggtcatctgtttcctgccaggaccctgattactacaGAAGTGG--------CGATTTTCTAGGCAATATTAAAAGGTACTTTGAGAATGAGGACCAGTTACACCAA i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87858822 522 - 158406734 GCATCTGTAGCtgctcctctggatcttttctgtactgtctctgccctgctctgtgccttaggagggtgactggtttggactcctgcaatgggttccttttcctctggcttccagttatgttcaaccagtggggaaggaacacaggcaggcaatcaggaggagagaagagcctgaggtccaggtatttatttcctggcttcttccctgccagatgattttgggttggctacgtccctaccact-gctgttataattcatacctactaggcaatcttttccttctacccttctctctctgggtccTCTTCAGCCTAAGGGTAGTAACAGCTCCCCCATCACCAATGTgggtaccacattatccctcgttatttcctaacacctttccata-ctttgttaagcactctccaaatcatgcagtttgagcaggtcatccgtttcctgccaggaccataattactacaGTAGTGG--------GGATTTTCTAGGCAATTTAAAAAAGTACTTTGAGAATGAGGACTAGTTCAAACAA i calJac3.chr6 C 0 C 0 s mm10.chr2 49708276 430 + 182113224 -ATTCTATTCCATCCCCTCTTACTCTGTT-------GTCTCTGCCTAGCTCTGGGCCCT-------------GTTCGCATCACTACAGT-GGCTCCCTTCCCTCTGCTCTGTAGTCAGGCCAGGCCAGTAAGGAAGTGGG--TAGCAGGTGATGGAAAAGGACAGAGGGGATGAGTGCAAGGCCTGCATT-----------TCCCTGCAGGCTCATTGTGAGCTGGATTGCTCTAGAGCTCAGGCCATTACAGTTCCCAC-----AAGTAAGGTTTGTCTTCAAGCTCTCTTTCTGAGGCTTCACCAT-GTTTA------------------------CTAATTGAGGCATTACATGTCCCC------TTTCTCAGCACCTTTCCACACCTTTCTTAG--ACTTGGCAAACTGCTCAAGTTGAGTGGGTCATTGCTTCACTGC-----CCCAGCTTATTATAGAAATAGAAGAAAAAGAATTTTCTGGGCATCTCAGAAAGTTACCCT------------------------ i mm10.chr2 C 0 C 0 e canFam3.chr19 50620607 619 + 53741614 I a score=493877.000000 s hg38.chr2_GL582966v2_alt 32184 144 + 96131 TGGTGATAACCTTGCTGAGTCTGCTCACAAAATATGCCTCTGGCTAAACCTGCCTGAGTATAGCATAGAGGCTTTAGCTTTCTCTTTCTGGTATCATGTGAAGTTATCAAGGGACTCTTTATGATTTAAAAAGTAAGATTAGTA s panTro4.chr2B 153147521 144 + 247518478 TGGTGATAACCTTGCTGAGTCTGCTCACAAAATATGCCTCTGGCTAAACCTGCCTGAGTATAGCATAGAGGCTTTAGCTTTCTCTTTCTGGTATCATGTGAAGTTATCAAGGGACTCTTTATGATTTAAAATGTAAGATTAGTA i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38351120 143 + 135000294 TGGTGATAACCTTGCTGAGTCTGCTCACAAAATGTGCCTCTGGCTAAACCTG-CTGAGTATAGCATAGAGGCTTTAGCTTTCTCTTTCTGGTATCATGTGAAGTTATCAAGGGACTCTTTATGATTTAAAAAGTAAGATTAGTA i ponAbe2.chr2b I 604 C 0 s nomLeu3.chr20 82301588 144 - 85365473 TGGTGATAACCTTGCTGAGTCTGCTCACAACATGTGCCTCTGGCTAAACCTGCCTGAGTATAGCATAGAGGCTTTAGCTTTCTCTTTCTGGTATCATGTGAAGTTATCAAGGGACTCTTTATGATTTACAAAGTAAGATTAGTA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11915215 144 + 106825570 TGGTGATAACCTTGCTGAGTCTGCTTACAAAATGTGTCTCTGGCTAAACCTGCCTGAGTACAGCATAGAGGCTTTAGCTTTCTCTTTCTGGTATCGTGTTAAAGTATCAAGGGACTCTTTATGATTTAAAAAGTAAGATTAGTA i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37619550 144 + 132586672 TGGTGATAACCTTGCTGAGTCTGCTTACAAAATGTGTCTCTGGCTAAACCTGCCTGAGTACAGCATAGAGGCTTTAGCTTTCTCTTTCTGGTATCGTGTTAAAGTATCAAGGGACTCTTTATGATTTAAAAAGTAAGATTAGTA i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11276727 144 + 104110932 TGGTAATAACCTTGCTGAGTCTGGTTACAAAATGTGTCTCTGGCTAAACCTGCCTGAGTACAGCATAGAGGCTTTAGCTTTCTCTTTCTGGTATCGTGTTAAAGTATCAAGGGACTctttatgatttaaaaagtaagattagTA i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34373395 144 + 128595539 TGGTAATAACCTTGCTGAGTCTGCTTACAGAATGTGTCTCTGGCTAAACCTGCCTGAGTACAGCATAGAGGCTTTAGCTTTCTCTTTCTAGTATCGTGTTAAAGTATCAAGGGACTCTTTATGATTTAAAAAGTAAGATTAGTA i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87859344 144 - 158406734 TGGTGATAACCTTGCTGAATCTGCTCACAAAATGTGCCTCTGGCTAAACCTGCCTGAGTACAGCAGAAAAGCTGCAGTTTTCTCTTTCTGGTGTCATGTGAAATTATCAAGGGACTCTTTATGATTTAAAAAGTAAGATTAGTA i calJac3.chr6 C 0 C 0 s mm10.chr2 49708706 139 + 182113224 --GCGATAGACTTGATAGTTCTACTTGAGAAATGTACCTCTGAGCAACACTGCCTGGAGACAGCACAGGGGCTCCATCTTTTCCTCTCTGGTACCATTTGCAGTCTTCAGGGCACTATTTATGACTTAAA---TAAAATCAGTA i mm10.chr2 C 0 C 0 e canFam3.chr19 50620607 619 + 53741614 I a score=2349857.000000 s hg38.chr2_GL582966v2_alt 32328 586 + 96131 GCCTTGAAGTGTGCCCTTAAGTGTCCATAAGCATTTTAGCCATGAG---TTATTTTTCACTTTTTGCCTTAC---------TAAGTTGATAATGGATG--CTTGTAATGTTTGTGCTTGCATCTGAGAAGCATCCACAGTACTGCCTGAGGATGTCAGGAGGAGAGGTGAGAGTGTCAAACAGGACCA--------GACTTTAAAGTAGTAATAAAATTGCTGTTATTTGAA-AAATTAGACTCAAAGCACTTCTAGGGATTGCAGCCTCAAGCTACAGTGAACAAGAGAGAGTTATCCTAATTCTTAAATGGAGTCTTACATTGAAGTTGTTAAACTCCTCTTTTGACAGTTGGGTTATTTAGTTGTCTGCTTTAGCAATGAATTTTTGGAATGACATCTGTAGTGCTGGTGAGGACTGCTGAATTTCTTGCACTGAAATAGAAATCAGG------ATGTCATTTGCTGACAACGG-TAATTAACCCGAATCACAAATCAGATTGTGCTGGCAAATATGACGGTGTAAGAACTGTTGGAAGTTCAAAATGAAAAAGTCAATAGCAAATAAAACAGGATATCACATATTTTTTAATGAAG-CTTTACCTTCTTGAAA-- s panTro4.chr2B 153147665 586 + 247518478 GCCTTGAAGTGTGCCCTTAAGTGTCCATAAGCATTTTAGCCATGAG---TTATTTTTCACTTTTTGCCTTAC---------TAAGTTGATAATGGATG--CTTGTGATGTTTGTGCTTGCATCTGAGAAGCATCCACAGTACCGCCTGAGGATGTCAGGAGGAGAGGTGAGAGTGTCAAACAGGACCA--------GACTTTAAAGTAGTAATAAAATTGCTGTTATTTGAA-AAATTAGACTCAAAGCACTTCTAGGGATTGCAGCCTCAAGCTACAGTGAACAAGAGAGAGTTATCCTAATTCTTAAATGGAGTCTTACATTGAAGTTGTTAAACTCCTCTTTTGACAGTTGGGTTATTTAGTTGTCTGCTTTAGCAATGAATTTTTGGAATGACATCTGTAGTGCTGGTGAGGACTACTGAATTTCTTGCACTGAAATAGAAATCAGG------ATGTCATTTGCTGACAATGG-TAATTAACCCGAATCACAAATCAGATTGTGCTGGCAAATATGACGGTGTAAGAACTGTTGGAAGTTCAAAATGAAAAAGTCAATAGCAAATAAAACAGGATATCACATATTTTTTAATGAAG-CTTTACCTTCTTGAAA-- i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38351263 586 + 135000294 GCCTTGAAGTGTGCCGTTAAGTGTCCATAAGCATTTTAGCCATGAG---TTATTTTTCACTTTTTGCCTTAC---------TAAGTTGATAATAGATG--CTTGTGATGTTTGTGCTTGCGTCTGAGAAACATCCGCAGTACCACCTGAGGATGTCAGGAGGAGAGGTGAGAGTGTCAAACAGGACCA--------GACTTTAAAGTAGTAATAAAATTGCTATTATTTGAA-AAATTAGACTTGAAGCACTTCTAGGGATCGCAGCCTCAAGCTACAGTGAACAAGAGAGAGTTATCCTAATTCTTAAATGGAGTCTTACATTGAAGTTGTTAAACTCCTCTTTTGACAGTTGGGTTATTTAGTTGTCTGCTTTAGCAATGAATTTTTGGAATGACATCTGTAGTGCTGGTGAGGACTGCTGAATTTCTTGCACTGAAATAGAAATCAGG------ATGTCATTTGCTGACAATGG-TAATTAACCCGAATCACAAATCAGATTGTGCTGGCAAATATGACGGTGTAAGAACTGTTGGAAGTTCAAAATGAAAAAGTCAATAGCAAATAAAACAGGATATCACATATTTTTTAATGAAG-CTTTACCTTCTTAAAA-- i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82301732 583 - 85365473 GCCTTGAAGTGTGCCCTCAAGTGTCCATAAGCATTTTAGCCATGAG---TTATTTTTCACTTTTTGCCTTAC---------TAAGTTGATAATGGATG--CTTGTGATGTTTGTGCTTGCGTCTGAGAAACATCCACAGTACCGCCTGAGGATGTC---AGGAGAGGTGAGAGTGTCAAACAGGACCA--------GACTTTAAAGTAGTAATAAAATTGCTGTTATTTGAA-AAATTAGATTCGAAGCATTTCTAGGGATCGCAGCCTCAAGCTACAGTGAACAAGAGAGAGTTATTCTAATTCTTAAATGGAGTCTTAGATTGAAGTTGTTAAACTCCTCTTTTGACAGTTGGGTTATTTAGTTGTCTGCTTTAGCAATGAATTTTTGGAATGACATCTGTAGTGCTGGTGAGGACTGCTGAATTTCTCGCACTGAAATAGAAATCAGG------ATGTCATTTGCTGACAACGG-TAATTAACCCGAATCACAAATCAGATTGTGCTGGCAAATATGATGGTGTAAGAACTGTTGGACATTCAAAATGAAAAAGTCAATAGCAAATAAAACAGGATATCACATATTTTTTAATGAAG-CTTTACCTTCTTAAAA-- i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11915359 594 + 106825570 GCCTTGAAGTGTGCCCTTAAGTGTCCATAAGCATTTTAGCCATGAG---TTATTTTTCACTTTTTGCCTTAC---------TAAGTTGATAATAGATG--CTTGTGGTGTTTGTGCTTGCGTCTGAGAAATATCCACAGCACTGCCTGAGGATGTCAGTAGGAGAGGTGAGAGTGTCAAACAGGAACAGACTTTATGACTTTAAAGTAATAATAAAATTGCTGCTATTTGAA-AAATTAGGCTCGAAGCACTTCTAGGGACCTCAGCCTCAAGCTGCAGTGAACAAGAGAGAGTTATTCTAATTCTTAAATGGAGTCTTACATTGAAGTTGTTGAACTCCTCTTTTGACAGTTGGGTTATTTAGTTGTCTGCTTTAGCAATGAATTTTTGGAATGACATCTGTAGTGCTGGTGAGGACTGCTGAATTTCTTGCACTGAAATAGAAATCAGG------ATGTCATTTGCTGACAACGG-TAATTAACCCGAATCACAAATCAGATTGTGCTGGCAAATATGACGGTGTAATAACTGCTAGAGGTTCAAAATGAAAAAGTCAATAGCAAATAAAACAGGATATCACATAGTTTTTAATGAAG-CTTTAGCTTCTTAAAA-- i rheMac3.chr12 C 0 I 1 s macFas5.chr12 37619694 594 + 132586672 GCCTTGAAGTGTGCCCTTAAGTGTCCATAAGCATTTTAGCCATGAG---TTATTTTTCACTTTTTGCCTTAC---------TAAGTTGATAATAGATG--CTTGTGGTGTTTGTGCTTGCGTCTGAGAAATATCCACAGCACTGCCTGAGGATGTCAGTAGGAGAGGTGAGAGTGTCAAACAGGAACAGACTTTATGACTTTAAAGTAATAATAAAATTGCTGCTATTTGAA-AAATTAGGCTCGAAGCACTTCTAGGGACCTCAGCCTCAAGCTGCAGTGAACAAGAGAGAGTTATTCTAATTCTTAAATGGAGTCTTACATTGAAGTTGTTGAACTCCTCTTTTGACAGTTGGGTTATTTAGTTGTCTGCTTTAGCAATGAATTTTTGGAATGACATCTGTAGTGCTGGTGAGGACTGCTGAATTTCTTGCACTGAAATAGAAATCAGG------ATGTCATTTGCTGACAACGG-TAATTAACCCGAATCACAAATCAGATTGTGCTGGCAAATATGACGGTGTAATAACTGCTAGAGGTTCAAAATGAAAAAGTCAATAGCAAATAAAACAGGATATCACATAGTTTTTAATGAAG-CTTTAGCTTCTTAAAA-- i macFas5.chr12 C 0 I 1 s papAnu2.chr12 11276871 594 + 104110932 GCCTTGAAGTGTGCCTTTAAGTGTCCATAAGCATTTTAGCCATgag---ttatttttcactttttgcctTAC---------TAAGTTGATAATAGATG--CTTGTGGTGTTTGTGCTTGCGTCTGAGAAATATCCACAGCACTGCCTGAGGATGTCAGTAGGAGAGGTGAGAGTGTCAAACAGGAACAGACTTTATGactttaaagtaataataaagtTGCTGCTATTTGAA-AAATTAGGCTCGAAGCACTTCTAGGGACCTCAGCCTCAAGCTGCAGTGAACAAGAGAGAGTTATTCTAATTCTTAAATGGAGTCTTACATTGAAGTTGTTGAACTCCTCTTTTGACAGTTGGGTTATTTAGTTGTCTGCTTTAGCAATGAATTTTTGGAATGACATCTGTAGTGCTGGTGAGGACTGCTGAATTTCTTGCACTGAAATAGAAATCAGG------ATGTCATTTGCTGACAACGG-TAATTAACGCGAATCACAAATCAGATTGTGCTGGCAAATATGACGGTGTAATAACTGCTAGAGGTTCAAAATGAAAAAGCCAATAGCAAATAAAACAGGATATCACATAGTTTTTAATGAAG-CTTTAGCTTCTTAAAA-- i papAnu2.chr12 C 0 I 1 s chlSab2.chr10 34373539 594 + 128595539 GCCTTGAAGTGTGCCCTTAAGTGTCCATAAGCATTTTAGCCATGAG---TTATTTTTCACTTTTTGCCTTAC---------TAAGTTGATAATAGATG--CTTGTGGTGTTTGTGCTTGCGTCTGAGAAATATCCACAGCACTGCCTGAGGATGTCGGTAGGAGAGGTGAGAGTGTCAAACAGGAACAGACTTTATGACTTTAAAGTAATAATAAAATTGCTGCTATTTGAA-AAATTAGGCTCGAAGCACTTATAGGGACCTCAGCCTCAAGCTGCAGTGAACAAGAGAGAGTTATTCTAATTCTTAAATAGAGTCTTACATTGAAGTTGTTGAACTCCTCTTTTGACAGTTGGGTTATTTAGTTGTCTGCTTTAGCAATGAATTTTTGGAATGACATCTGTAGTGCTGGTGAGGACTGCTGAATTTCTTGCACTGAAATAGAAATCAGG------ATGTCATTTGCTGACAACGG-TAATTAACCCGAATCACAAATCAGATTGTGCTGGCAAATATGACGGTGTAATAACTGCTAGAAGTTCAAAATGAAAAAGTCAATAGCAAATAAAACAGGATATCACGTAGTTTTTAATGAAG-CTTTAGCTTCTTAAAA-- i chlSab2.chr10 C 0 I 213 s calJac3.chr6 87859488 580 - 158406734 GCCTTGAAGTGCGTCCTTAAGTATCCATAAACATTTTAGCCATGAG---TTATTTTTCACTTTTTGTCTTAC---------TAAGTTGATAATAGATG--CTTGGGGTGTTTGTGCTTGCATCTGAGAAACATCCACAACACCGCCTGAGGATGTT---AGGAGAGGTGAGAGTGTCAAACTCGAACA--------GACTTTAAAGTAATAATAAAATTGCTGCTATTTGAA-AAATTAGACTCAAAGCACTTCTAGGGGCAGCAGCCTCAAGCTACAGTGAACAAGAGAAAATTATCCTAATTCTTAAATGGAGTCTTACATTGAAGTTGTTTAACTCCTCTTTTGACAGTTGGGTTATTTAGTTGTCTGCTTTAGAAATGAATATTTGGAATGACATCGGTAGCACTGGTGAGGACTGCTAAATTTCTTGCACTGAAATAGAAATC---------ATGTCATTTGCTGACAGCGG-TAATTAACCTGAATCACAAATCAGATAGTGCTGGCAAATATGATGGTGTAAGAATTGTTTGAAGTTCAAAATGGAAAAGTCAATAGCAAATAAAACAGGATATCACATATTTCTTAATGAAG-CTTTACCCTCTTTAAA-- i calJac3.chr6 C 0 I 1 s mm10.chr2 49708845 596 + 182113224 GTCTTAAATTGTATCCTTCAGTGACAGCAAGCATCTTAGCTATGAGGCTTTTTTTTTTTTTTTCTCTCCTACTTCCTGACTTAAGTTGATAACAGGGGACACAGCCATGCCTGTGCTTGCAGCCCAGACGCAGCCATAGCACCACCTGAGGGTGTTAGAAGGCAGGGTGAGAAAGCCAGACTGCACCA--------AGTCTTAAAGTACTAATAAAATTACTGCTA-TTGAA-GAATTAAAATTGAAGCAGTTCTGGGGAGAGCAGCCTTAAGGTACAG----CAAATGAGAATTATCCTAATTCTTTCAT-GAGTCCAGCACTGATATCATTTAACTCCTCTTTCAACAGTTGGGTTATTTAGTTGTCTGCTCTAGAAATTAAT-TTTGCAATGGCAACTGTAGCACTGGGGCGGACGGTTGAATTACTTGCACCAAAATAGAAATCATGTCCCAAATGTCATTTGATGACAACAG-TAATTAACCTGGATCACACATCAG-CTGTAGCAGCAAACATGACAGTCCTAGAATTGTTTAGAGATTAAAATGAGAATGTCAGTGGCAAG-AAGACAGAGCACCATGTATTTTCACATG-AG-CTTTGCCTGCTTAACA-- i mm10.chr2 C 0 I 8 s canFam3.chr19 50621226 590 + 53741614 gcaccgagctggacCCTTCAATGTCCACAAGCATTTTAGCCATAGG---TTGTTTTTCACTTTCTGACTTAC---------TGAGTTGATAGTGCACG--CT-GCGGTGCTTGTGCTCGT-CCTGAGGAGCATCCATGCTGCCGCCGGAGGATGTTGGAAGGCGAGACGAGAGTGTCGAGCTGGCACA--------GAC-TGGAAGTAGTAATGAAATTGCTGCTGTTTGAATGAATTAGAGCTGAAGCACTTCTAGGGACAGAAGCCTCAAGCTACAGAGAACGAGGGAGAATTTTACTAATTCTTAAGTGGAGTCTTAGGATGAAATCATCTCACTC--CGTTTGACAGTTGGGTTATTTAGTTGTCTGTTTTAAGAATTAATTTTTGGAATGACATCTGTAGCCCTGATGAGGGCTGGTGAATTTCTTTCCCCGAAATAGAAATCGTGTCCAAAATGTCGTTTCATGACAACAGTTAATTAACCTGAATCACACATCAGATAATGCTGGCAAATATGACAGTACAAGAACTTGTGGGAGTTAAAAATGGAAAAGGGAAGAGCAAATAAAACAGGAAATCAC--AGTTTTAAATGAAGTTTTTGCCTTCTTCAGTAA i canFam3.chr19 I 619 C 0 a score=1374024.000000 s hg38.chr2_GL582966v2_alt 32914 445 + 96131 --------GTAAGCCTAAGTGG-----AGTTTCCTTTTTAATTGGACAAGGCCACTTAGGTGTTCGTTTCTGTGCATGCTGAGCTGAGTCATGGCTTTTGTTTTTGGTATCACTTGGTGCAGCTACTG-AT-----TTGCTCTCCACAGTTGCCCCTTTGGGTTACTCTCCAGGTA-CATCC-CTGTGGCATCTCAACCCCCCAGGCCATGTGCCCCA-GAGATCGCATCATCTCTTATACTGgaagtggcaaaatggtggccattaggcatgtttgtttgtcccacacattgtt---tttataaatagtttaaaactgggagacacaaattaaagaaaaaa---cagtttctgattttt-cttggaaaataggatgatct--gaatactgtggggcctcctcacc--gcatggt----gatgacgggctgTGAT--GG---GGGGTGCGGGTGTGTGCTCAGCAGGGAGCCATGGTGTCCTCTG--GC s panTro4.chr2B 153148251 447 + 247518478 --------GTAAGCCTAAGTGG-----AGTTTCCTTTTTAATTGGACAAGGCCACTTAGGTGTTCGTCTCTGTGCATGCTGAGCTGAGTCATGGCTTTTGTTTTTGGTATCACTTGGTGCAGCTACTG-AT-----TTGCTCTCCACAGTTGCCCCTTTGGGTTACTCTCCAGGTA-CATCC-CTGTGGCATCTCAACCCCCCAGGCCATGTGCCCCA-GAGATCGCATCATCTCTTATACTGgaagtggcaaaatggtggccattaggcatgtttgtttgtcccacacattgtt---tttataaatagtttaaaactgggagacacaaattaaagaaaaaa---cagtttctgattttt-cttggaaaataggatgatct--gaatactgtggggcctcctcacc--gcatggt----gatgatgggctgTGATGCGG---GGGGGGGGGGCGTATGCTCAGCAGGGAGCCATGGTGTCCTCTG--GC i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38351849 436 + 135000294 --------GTAAGCCTAAGTGG-----AGTTTCCTTTTTAATTGGACAAGGCCACTTAGGTGTTCGTTTCTGTGCATGCTGAGGTGAGTCATGGCTTTTGTTTTTGGTATCACCTGGTGCAGCTACTG-AT-----TTGCTCTCCACAGTTGCCTCTTTGGGTTACTCTCCAGGTA-CATCC-CTGCGGCATCTCAACCCCCCAGGCCACGTGCCCCA-GAGATTGCATCATCTCCTATACTGGAAGTGGCAAAA--ATGGCCATTAGGCATGtttgtttgtcccacacattatt---tttataaatagtttaaaactgggagacacaaattaaagaaaaaa---cagtttctgattttt-cttggaaaatgggatgacct--gaatcctgtggggcctcctcacc--acgtggt----gatgatgggctgTGAT------------GGGGGCGTATGCTCAGCAGGGAGCCATGGTGTCATCTG--GC i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82302315 438 - 85365473 --------GTAAGCCGAAGTGG-----AGTTTCCTTTTTAATCGGACAAGGCCACTTAGGTGTTCGTTTCTGTGCATGCCGAGGTGAGTCATGGCTTTTGTTTTTGGAATCACCTGGTGCAGCTACTG-AT-----TTGCTCTCCACAGTTGCCCCTTTTGGTTACTCTCCAGGTA-CATCC-CTGTGGCGTCTCAATCCCCCAGGCCATGTGCCCCA-GAGATCGCGTCATCTCCTATACTGgaagtggcaaaatggtggccattaggcatgtttatttgtcccacacattatt---tttataaatagtttaaaactgggagacacaaatgaaagaaaaaa---caatttctcattttt-cttggaaaatgggatgatct--gaatactgtggggcctcctcacc--gcatggt----gatgatgggctgTGAT------------GGGGGCGTATGCTCAGCAGGGAGCCATGGTGTCATCTG--GC i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11915954 445 + 106825570 --------GCGAGCCTAAGTGG-----AGTTCCCTTTTCAATTGGACAAGGCTACTTAGGTGTTCGTTTCTGTGCATGCCGAGGTGAGTTGTGGCTTTTGTTTTTGGTATCACCTGGTGCAGCTACTG-AT-----TTGCTGTCTACAGTAGCCCCTTTGGTTTACTCTCCAGGTAGCATCC-CTGTGGCATCACAACCCCCCAGGCCATGTGCCCCAGGAGACCGCATCATCTCCTGTACTagaagtggcaaaatggtggccattaggcatgtttgtttgtcccacatattact---tttataaatagtttaaaactgggagacacaaattaaagaaaaaa---cagtttctgattttt-cttggaaaatgggatgatct--gaatactgtggggcctcctcacc--acatggt----gatgatgggctgTGAT--GG---GGGGGTGGGGCGCATGCTCAGCAGGGAGCCATGGTGTCACCTG---- i rheMac3.chr12 I 1 C 0 s macFas5.chr12 37620289 445 + 132586672 --------GCGAGCCTAAGTGG-----AGTTCCCTTTTCAATTGGACAAGGCTACTTAGGTGTTCGTTTCTGTGCATGCCGAGGTGAGTTGTGGCTTTTGTTTTTGGTATCACCTGGTGCAGCTACTG-AT-----TTGCTGTCTACAGTAGCCCCTTTGGTTTACTCTCCAGGTAGCATCC-CTGTGGCATCACAACCCCCCAGACCATGTGCCCCAGGAGACCGCATCATCTCCTGTACTagaagtggcaaaatggtggccattaggcatgtttgtttgtcccacatattact---tttataaatagtttaaaactgggagacacaaattaaagaaaaaa---cagtttctgattttt-cttggaaaatgggatgatct--gaatactgtggggcctcctcacc--acatggt----gatgatgggctgTGAT--GG---GGGGGTGGGGCGCATGCTCAGCAGGGAGCCATGGTGTCACCTG---- i macFas5.chr12 I 1 C 0 s papAnu2.chr12 11277466 452 + 104110932 --------GCGAGCCTAAGTGG-AGTTAGTTCCCTTTTCAATTGGACAAGGCTACTTAGGTGTTCGTTTCTGTGCATGCTGAGGTGAGTTGTGGCTTTTGTTTTTGGTATCACCTGGTGCAGCTACTG-AT-----TTGCTGTCTACAGTAGCCCCTTTGGGTTACTCTCCAGGTAGCATCC-CTGTGGCATCACAACCCCCCAGGCCATGTGCCCCAGGAGACCGCATCATCTCCTGTACTAGAAGTGGCAAAATGGTGGCCATTAGGCATGTTTGTTTGTCCcacatattact---tttataaatagtTTAAAACTGGGAGacacaaattaaagaaaaaa---cagtttctgattttt-cttggAAAATAGGATGATCT--GAATACTGTGGGGCCTCCTCACC--ACATGGT----GATGATGGGCTGTgat--ggggcgggggtggggcgCATGCTCAGCAGGGAGCCATGGTGTCACCTG---- i papAnu2.chr12 I 1 C 0 s chlSab2.chr10 34374346 447 + 128595539 --------GCGAGCCTAAGTGG-----AGTTCCCTTTTCAATTGGACAAGGCTACTTAGGTGTTCGTTTCTGTGCATGCCGAGGTGAGTTGTGGCTTTTGTTTTTGGTATCACCTGGTGCAGCTACTG-AT-----TTTCTGTCTACAGTAGCCCCTTTGGGTTACTCTCCAGGTAGCATCC-CTGTGGCATCACAACCCCCCAGGCCATGTGCCCCAGGAGACCGCATCATCTCCTGTACTAGAAGTGGCAAAATGGTGGCCATTAGGCGTGTTTGTTTGTCCCACACATTACT---TTTATAAATAGTTTAAAACTGGGAGACACAAATTAAAGAAAAAA---CAGTTTCTGATTTTT-CTTGGAAAATGGGTTGATAT--GAATACTGCGGGGCCTCCTCACC--ACATGGT----GATGTTGGGCTGTTAT--GG---GGGGGTGGTGCGCATGCGCAGCAGGGAGCCATGGTATCCCCTGGC-- i chlSab2.chr10 I 213 I 233 s calJac3.chr6 87860069 417 - 158406734 --------GTGAGCCTAAGTGG-----AATTTCTTTTTTAATTGGATGAGG-----TAGGTGTTTGTTTCTGTGCATGCTGAGGAGAGTCGTGGCTTTGGTTTCTGGTATTGCCTGGTGCAGCTGCTG-AT------------------TGGCGCCTTTGGGTTACTCTTCAACTACCATCC-CTCTGGCATCACCACCCCCCAGGCCATGTGCCCAAGGAGATCACATCATTTCCTATACTGAAAGTGGCAAGATGGTGGCTATTAGGCATGTTTGTTTATCCCACACAATATT---TTTATCAATAGTTTAAAACTGAGAGACACAAAT--AAAAAAAAA---CAGTTTCTGACTTTC----------TAGGAAACTCT--GAATACTGGGGGGCCTCCTCACC--ACATGGTGATGGATGATGGGCTGTGAT--GG--------CGGGGCATTTACTCAGCAGGGGGCCATGGTGTCACCTG--GC i calJac3.chr6 I 1 C 0 s mm10.chr2 49709449 413 + 182113224 --------GCAAACAGGCGAGG-----AATTTACTGTTT-CCCGGGTGTGGCTG--AACCCGTCTGTTTCTGTGCAGGCCTAGGTGAGCCTAGCCTTTTGTT--TAATCTCACCTAATGCAGATGCTG-ATTTCTTTTCTTCTCCCCAGCTTCTCCTTTCATCGACTGTCTAT----CACGC-ACATGACATCACA--CCCCTAAGCCACGTGCCCTACGAGATCA---------------TGAAA--AAAAAAATGGTGCCCATGAGACCTGTTTGT------CATGCATTATGTTATTTTTAAGACATTCTGAATTTGGATATACAAATATTAAAAAAAATCCCAACTTCTGGCTATT-TATAAACAGTGAGATGATTTCAGAATAAC---CAGCCTTTTATTCTGGTGTGCT----GATGCTTGCCTTTGCT--GA---GGGGA------------TCATTAGGAAGCCATGGTGTCCCCCA--GT i mm10.chr2 I 8 C 0 s canFam3.chr19 50621816 418 + 53741614 ATAAATAAGTGGGTTTCGGTCGTGGTCAGTTTCCTTTTTAATTGGGCAGGTCTGCTTGTGTGTTCATTGCTGCAGGTAACTAGTTGAATCATGTCTTTT-----TAGTATTAGCAAGAGCTGCCACCGCCT-----TTGCTCCCATCGGCTGCTCC-CTGAGTGACTGTCCAGA---CGTCCACTGGGGCATCAGG--CCCCCGCCCC-----CCCCA----TTCACTCCATCTCTTTTACTGGAAATGACAAAATGATGCCCCTCCGGCATgtttgtttgccccacacattatt---ttggaaaaccgtttaaaaccgggagat------------aaaag---ta----ctgacttttccttggaaaatgggatgaatg--gagagcagtgggccccccactccc-gcgtggt----gacaatTTCCTGTGAA--GA---GGGGC---------TGCTCAGCAGCGAGCCTTGGT-TTACCTG--GC i canFam3.chr19 C 0 C 0 a score=60985.000000 s hg38.chr2_GL582966v2_alt 33359 32 + 96131 CAGCCTTACTCAGCTGTGGGACCCACCTGACC s panTro4.chr2B 153148698 32 + 247518478 CAGCCTTACTCAGCTGTGGGACCCACCTGACC i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38352285 32 + 135000294 CAGTCTTACTCAGCTGTGGGACCCACCTGACC i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82302753 32 - 85365473 CAGCCTTACTCAGCTGTGGGACCCACCTGACC i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11916399 20 + 106825570 ------------GCTGCAGGACCCACCTGACC i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37620734 20 + 132586672 ------------GCTGCAGGACCCACCTGACC i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11277918 20 + 104110932 ------------GCTGCAGGACCCACCTGACC i papAnu2.chr12 C 0 C 0 s calJac3.chr6 87860486 32 - 158406734 CAGTCTTACTCGGCTGTGGGACCCACCTGACC i calJac3.chr6 C 0 C 0 s mm10.chr2 49709862 32 + 182113224 CACCCTCTCTCACTTATGTGGCCCACCTACCT i mm10.chr2 C 0 C 0 s canFam3.chr19 50622234 32 + 53741614 TGGCCTGAACCTGTCAAGTGATGTGCCGGTCC i canFam3.chr19 C 0 C 0 e chlSab2.chr10 34374793 233 + 128595539 I a score=1204597.000000 s hg38.chr2_GL582966v2_alt 33391 359 + 96131 TATGAGGCATGTGTTG--A--TGTGATAAATACATCAGGGGTGGTTTTGGGTACCACAGGTGAGGAAGAGAAATAATTGATTCTATTATTTCTGTCTGTGTATCATTGGTATAAGAAACTGCAGTCTCCAAGAGGACAGAGACCTCGTCTATCTGTCTTGGTGTACCCCAAA---TTCATAAATGTTAATTGAACTGAAAAGAACCTCAACTTAGGCAGGTAAATCTGGTGATGGTATGCAGGGGGCTTAAAGGAGGGTACTGAACATTTGA--AAAAGGCTGTAACCATAAGG-ATGGCTGAGAACACAGACTAAGACAGTGGCAGAGGGAAGAGAGAAAGAGGAAACCCTGAG--ACAATTCGAATAAA s panTro4.chr2B 153148730 345 + 247518478 TATGAGGCATGTGTTG--A--TGTGATAAATACATCAGGGGTGGTTCTGGGTACCACAGGTGAGGAAGAGAAATAATTGATTCTATTATTTCTGTCTGTGTATCATTGGTATAAGAAACTGCAGGCTCCAAGAGGACAGAGACCTCGTCTATCTGTCTTGGTGTACCCCAAA---TTCATAAATGTTAATTGAACTGAAAAGAACCTCAACTTAGGCAGGTAAATCTGGTGATGGTATGCAAGGGGCTTAAAGGAGGGTACTGAACATTTGA--AAAAGGCTGTAACCATAAGG-ATGGCTGAGA--------------AGTGGCAGAGGGAAGAGAGAAAGAGGAAACCCTGAG--ACAATTCGAATAAA i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38352317 358 + 135000294 TATGAGGCATGTGTTG--A--TGTGTTAAATATATCAGGGGTGGTTTCGGGTACCACGGGTGAGGAAGAGAAATAATTGATTC-ATTATTTCTGTCTGTGTATCATTGGTATAAGaaactgcaagctccaagaggacagagacctcgtctatctgtcttggtgtaccccaAA---TTCATAAATGTTAATTGAACTGAAAAGAACCTCAACTTAGGCAGGTAAATCTGGTGATGGTATGCAGGGGGCTTAAAGGAGGGTACTGAACATTTGA--AAAAGGCTATAACCATAAGG-ATGGCTGAGAACACAGACTAAGACAGTGGCAGAGGGAAGAGAGAAAGAGGAAACCCTGAG--ACAATTCGAACAAA i ponAbe2.chr2b C 0 M 1464 s nomLeu3.chr20 82302785 358 - 85365473 TATGAGGCATGTGTTG--A--TGTGTTAAATACATCAGGGGTGGTTCTGGGTACCACAGGTGAGGAAGAGAAATAACTGATTCTATTATTTCTGTCTGTGTATCATTGGTATAAGAAACTGCAAGCTCCAAGAGGACAGAGACCTCGTCCATCTGTCTTGGTGTACCCCAAA---TTCATAAATGTTAATTGAACTGAAAAGAACCTCAACTTAGGCAGGTAAATCTGGTGATGGTATGCAGGGGGCTTAAAGGAGGGTA-TGAACATTTGA--AAAAGGCTATAACCATAAGG-ATGGCTGAGAACACAGACTAAGATAGAGGCAGAGGGAAGAGAGAAAGAGGAAACCCTGAG--ACAATTCAAATAAA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11916419 359 + 106825570 TACGAGGCATGTGTTG--A--TGTGTTAAATACATCAGGGGTGGTTCTGGGTACCACAGGTGAGGAAGAGAAATAATTGATTCTATTATTTCTGTCTGTGTATCATTGGTATAAGAAACTCCAAGCTCCAAGAGGCCAGAGACCTTGTCCATCTGTCTTGGTATACCCCAAA---TTCATAAATGTTAATTGAACTGAAAAGAACCTCAACTTAGGAAGGTAAATCTGGTGATGGTATTCAGGGGGCTTAAAGGAGGGTACTGAACATTTGA--AAAAGACTATAACCATAAGG-ATGGCTGAGGACACAGACTAAGACAGTAGCAGAGGGAAGAGGGAAAGAGGAAATCCTGAG--ACAATTCAAATAAA i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37620754 359 + 132586672 TACGAGGCATGTGTTG--A--TGTGTTAAATACATCAGGGGTGGTTCTGGGTACCACAGGTGAGGAAGAGAAATAATTGATTCTATTATTTCTGTCTGTGTATCATTGGTATAAGAAACTCCAAGCTCCAAGAGGCCAGAGACCTTGTCCATCTGTCTTGGTATACCCCAAA---TTCATAAATGTTAATTGAACTGAAAAGAACCTCAACTTAGGAAGGTAAATCTGGTGATGGTATTCAGGGGGCTTAAAGGAGGGTACTGAACATTTGA--AAAAGACTATAACCATAAGG-ATGGCTGAGGACACAGACTAAGACAGTAGCAGAGGGAAGAGGGAAAGAGGAAACCCTGAG--ACAATTCAAATAAA i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11277938 356 + 104110932 TACGAGGCATGTGTTG--A--TGTGTTAAATACATCAGGGGTGGTTCTGGGTACCACAGGTGAGGAAGTGAAATAATTGATTCTATTATTTCTGTCTGTGTATCATTGGTATAAGAAACTCCAAGCTCCAAGAGGCCAGAGACCTTGTCCATCTGTCTTGGTATACCCCAAA---TTCATACATGTTAATTGAACTGAAAAGAACCTCAACTTAGGAAGGTAAATCTGGTGATGGTATTCAGGGGGCTTAAAGGAGGGTACTGAACATTTGA--AAAAGACTATAACCATAAGG-ATGGCTGAGGACACAGACTAAGAc---agcagagggaagagggaaagaggaaaccCTGAG--ACAATTCAAATGAA i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34375026 359 + 128595539 TACGAGGCATGTGTTG--A--TGTGTTAAATACATCAAGGGTGGTTCTGGGTACCACAGGTGAGGAAGAGAAATAATTGATTCTATTATTTCTGTTTGTGTATCATTGGTATAAGAAACTCCAAGCTCCAAGAGGCCAGAGACCTTGTCCATCTGTCTTGGTATACCTCAAA---TTCGTAAACGTTAATTGAACTGAAAAGAACGTCAACTTAGGAGGGTAAATCTGGTGATGGTATTCAGGGGGCTTAAAGGAGGGTACTGAACATTTGA--AAAAGGCTATAACCATAAGG-ATGGCTGAGGACACAGACTAAGACAGTAGCAGAGGGAAGAGGGAAAGAGGAAACCCTGAG--ACAATTCAAATAAA i chlSab2.chr10 I 233 C 0 s calJac3.chr6 87860518 356 - 158406734 TATGAGGCATATGTTG--A--TATGTTAAATACATCAGGGGTGGTTCTGGGTACCAGACGTGAGGAAGAGAAATAATTGATTCTGTTATTTCTGTCTCTGTGTCCTTGGTATAAAAAACTCCAAGCTCCAAGAGGCCAGAGACCTCGTCCTCCTGTCATGGTGTACCCCAAA---TTCATAAATGTTAATTGAACTGAAAAAA---CCAACTTAGGAAGGTAAATCTGGTGATGGCATGCAGGGGGCTTTAAGGAGGATACTGGACGTTTGG--AAAAGGCTATAAACATAAGG-AGGGCTGAGAACATAGACCGAGACAGTGGTAGAGGAAAAAGAGACAGAAGAAACCCTGAG--ACGATTCAAATCAA i calJac3.chr6 C 0 C 0 s mm10.chr2 49709894 339 + 182113224 TAT-AGCCATGTGTTGGCA--TGTGCCTAACACTT------TGGTTCTAGGCACCAAAGGCAAATAAGAGAAGTAGCTGATTGTTCAATT--------TGTGTCGCTGACATAAGAAACCCCAAGCTGTAAGAGGTGGGGCACTTTGCCCATCCTTGTTGGTATGTTCCTAGTGTTTTGTAAGTGTTTACCGAGTTGATTGGGAATTCTGTTTA-GAAGACTAGTCTGGCAGAGGTCTGTGGAATGCTTAAA----CATGCTGAACACCGGG--GTAAGCCTCTAACCC------ACGGCCT-GAAGACAGACTGTGA-GGACACAGAGGAAGTTAGACAAAATGGGACCCTGAGGCACAATCTGAATGAA i mm10.chr2 C 0 C 0 s canFam3.chr19 50622266 326 + 53741614 --CGGGAAACGTGTTG--ACGTGTGTTCCACACACCAGGGACGATTCTAGGGAT-----GTGATTAAGGGAAGCAAC------------CTCCGTCTGTGGTTTATTGGTAGGAGAAACTGTAAACTCTACAAGAC------TTTGGCTCAGTTGTCTTGGTGTAGCCCCGGTGTTTCATAAATGTTA---GGATAGAAGGAAGCTCTCCCTTAGGAAGATGAACGTGGCAGGCCCGTGCACGATGCGTCGAGGAGGATGCTGAGTGCTTGAGGAAAAGACCGTCGTCACACGTCAGGGCCAAGAACATAGATTTAGGTGGTGGCAGGGGGAACAGAAAAAGACGTGGCCCTGGA--A------------- i canFam3.chr19 C 0 C 0 a score=221725.000000 s hg38.chr2_GL582966v2_alt 33750 95 + 96131 TGTTCATTAGATTTAGAGACCAGTGGGATGTGAAGGAGAAAAGGAAAGGATGAGCTTGAGGCCTCAAGGGTTAGTGGTG-------------------------------------------CCGTTAG----------------------TCCAATTAG s panTro4.chr2B 153149075 95 + 247518478 CGTTCATTAGATTTAGAGACCGGTGGGATGTGAAGGAGAAAAGGAAAGGATGAGCTTGAAGCCTCAAGGGTTAGTGGTG-------------------------------------------CCGTTAG----------------------TCCAATTAG i panTro4.chr2B C 0 C 0 s nomLeu3.chr20 82303143 95 - 85365473 CGTTCATTAGATTTAGAGACCGGTGGGATGTGAAGGAGAAAAGGAAAGGAAGAGCTTGAAGCCTCAAGGGGTAGTGGTG-------------------------------------------CCATTAG----------------------TCCAGTTAG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11916778 95 + 106825570 CGTTCATTAGATTTAGAGACCGGTAGGATGTGAAGGAGAAAAGGAAAGGATGATCTTGAAGCCTCAAGGGGTAGTGGTG-------------------------------------------CCATTAG----------------------TCCAGTTAG i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37621113 95 + 132586672 CGTTCATTAGATTTAGAGACCGATAGGATGTGAAGGAGAAAAGGAAAGGATGATCTTGAAGCCTCAAGGGGTAGTGGTG-------------------------------------------CCATTAG----------------------TCCAGTTAG i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11278294 95 + 104110932 CGTTCATTAGATTTAGAGACCAGTAGGAtgtgaaggagaaaaggaaaggctgATCTTGAAGCCTCAAGGGGTAGTGGTG-------------------------------------------CCATTAG----------------------TCCAGTTAG i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34375385 95 + 128595539 CATTCATTAGATTTAGAGACCGGTAGGATGTGAAGGAGAAAAGGAAAGGATGATCTTGAAGCCTCAAGGGGTAGTGTTG-------------------------------------------CCATTAG----------------------TCCAGTTAG i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87860874 95 - 158406734 CCTCCATTAGATTTAGAGACCAGTGGGATATGAAGGAGAAAAGAAAAGGATGAGCTTGGAGCCTCAAGGGGTAGTGGTG-------------------------------------------CCATTAG----------------------ACCAGTTAA i calJac3.chr6 C 0 C 0 s mm10.chr2 49710233 144 + 182113224 ----------------AGTCCATTGGACTGTGAAGGAGAAGAGGAAAGGGTGGCTCTGGAGCCTTAAGAAATAACAGTGTgaggttggagcaatggctcaggggttaagagtgcttgttctctcatgaggaccaaagattagacctcagcatccagtcag i mm10.chr2 C 0 I 202 s canFam3.chr19 50622592 69 + 53741614 --ACCCCTTGGGATGTAGACTGGCAGGGGGGAAAGGGGAATGGGGAACGGCGAGTTTGGTGAGTTGGAGGG----------------------------------------------------------------------------------------- i canFam3.chr19 C 0 C 0 e ponAbe2.chr2b 38352675 1464 + 135000294 M a score=610123.000000 s hg38.chr2_GL582966v2_alt 33845 199 + 96131 GAGGATGGTTGGTGAAAGCCACAGGATCCCTTCTGCTTCCCTATTTCCAGTCTTTTGACATGA--GGAATCTTGGGCTTAATCATATT---GGTTTAGCTAATGGTAATAATTA-GCT---GAATTGTCCCCTTATGTTTTT-AATCCCAGAGCTAAGACCATCAAGAATACAGTCTCTGTGAACCTAGAACTGACAGCAGAAGAATGg s panTro4.chr2B 153149170 199 + 247518478 GAGGATGGTTGGTGAAAGCCACAGGATCCCTTCTGCTTCCCTAATTCCAGTCTTTTGACATGA--GGAATCTTGGGCTTAATCATATT---GATTTAGCTAATGCTAATAATTA-GCT---GAATTGTCCCCTTATGTTTTT-AATCCCAGAGCTAAGACCATCAAGAATACAGTCTCTGTGAACCTAGAACTGACAGCAGAAGAATGG i panTro4.chr2B C 0 C 0 s nomLeu3.chr20 82303238 199 - 85365473 GCGGATGGTTGGTGAAAGCCACAGGATCCCTTCTGCTTCCCTATTTCCCGTCTTTTGGCGTGA--GGAATCTCGGGCTTAATCATATT---GATTTAGCTAATGCTAATAATTA-GCT---GAATTGTCCCCTTATGTTTTT-AATCCCAGAGCTAAGACCATCAAGAATACAGTCTCTGTGAACCTAGAACTGACagcagaagaatgg i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11916873 199 + 106825570 GAGGATGGTTGGTGAAAGCCACAGGATCCTTTCTGCTTCCCTATCTCCAGTCTTTTGACATGA--GGAATCTCGGGCTTAATCATACT---GATTTAGCTAATGCTAATAATGA-GCT---GAATTGTCCCCTTATGTTTTT-AATCCCAGAGCTAAGACCATCAAGAATACAGTCTCTGTGAACCTAGAACTGACAGCAGAAGAATGG i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37621208 199 + 132586672 GAGGATGGTTGGTGAAAGCCACAGGATCCTTTCTGCTTCCCTATCTCCAGTCTTTTGACATGA--GGAATCTCGGGCTTAATCATACT---GATTTAGCTAATGCTAATAATGA-GCT---GAATTGTCCCCTTATGTTTTT-AATCCCAGAGCTAAGACCATCAAGAATACAGTCTCTGTGAACCTAGAACTGACAGCAGAAGAATGg i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11278389 199 + 104110932 GGGGATGGTTGGTGAAAGCCACAGGATCCTTTCTGCTTCCCTATCTCCAGTCTTTTGACATGA--GGAATCTCGGGCTTGGTCATACT---GATTTAGCTAATGCTAATAATGA-GCT---GAATTGTCCCCTTATGTTTTT-AATCCCAGAGCTAAGACCATCAAGAATACAGTCTCTGTGAACCTAGAACTGACAGCagaagaatgg i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34375480 199 + 128595539 GAGGATGGTTGGTGAAAGCCACAGGATCCTTTCTGCTTCCCTATCTCCAGTCTTTTGACATGA--GGAATCTCAGGCTTAATCATACT---GATTTAGCTAATGCTAATAATGA-GCT---GAATTGTCCCCTTTTGTTTTT-AATCCCAGAGCTAAGACCATCAAGAATACAGTCTCTGTGAACCTAGAACTGACagcagaagaatgg i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87860969 198 - 158406734 AAGGATGGTTGGTGAAAGTCACAGGATCTCTTCTGCTTCCCTGTTTCCAGTCTTTTGATATGA--GGAATCTAAGGCTAACTCATATT---GATTTACCTAATGCTAATAATTA-GCT---GAATTGT-CCCTTATGTTTTT-AATCCCAGAGCTAAGACCATCAAGAATACAGTCTCTGTGAACCTAGAACTGACAGCAGAAGAATGG i calJac3.chr6 C 0 C 0 s mm10.chr2 49710579 198 + 182113224 GAGGGCTGTAGGTAGGTGCCACAGGGAGTCTT-TGCCATTCCAGTTCC---TTTTGGATGTGAAGGGAATCTGAGACTTG-TTATATA---AAATCAGTAAGGGCTAATGGCTA-TTCTTGGAATTTATTTCCTGTG-TTTT-AATCCCAGAGCAAAGACCATCAAGAATACAGTCTCTGTGAACTTGGAACTAACAGCAGAAGAGTGG i mm10.chr2 I 202 C 0 s canFam3.chr19 50622661 197 + 53741614 GGTGGTAGTAGGTG------ACAGGGTCCCTTCTGCTTCCCAGTCT-CGGCCTTCTGATGGGAA-GGCGCCTGAAGCTTAATTGTATTCACCATTTAGCTAA-GCCAGTAGCTACCCT---GAGTCTCTCCCTTCTGTTTCTGGACCCCAGGGCCAAGACCATCAAGAATACGGTGTCTGTGAACCTGGAATTGACGGCGGAAGAATGG i canFam3.chr19 C 0 I 2 e ponAbe2.chr2b 38352675 1464 + 135000294 M a score=6552.000000 s hg38.chr2_GL582966v2_alt 34044 2 + 96131 aa s panTro4.chr2B 153149369 2 + 247518478 AA i panTro4.chr2B C 0 C 0 s nomLeu3.chr20 82303437 2 - 85365473 aa i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11917072 2 + 106825570 AA i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37621407 2 + 132586672 aa i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11278588 2 + 104110932 aa i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34375679 2 + 128595539 aa i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87861167 2 - 158406734 AA i calJac3.chr6 C 0 C 0 s mm10.chr2 49710777 2 + 182113224 AA i mm10.chr2 C 0 C 0 e canFam3.chr19 50622858 2 + 53741614 I e ponAbe2.chr2b 38352675 1464 + 135000294 M a score=402295.000000 s hg38.chr2_GL582966v2_alt 34046 110 + 96131 gaagaaatatgaaaaagagaaagagaaaaacaagaCTTTGAAGAATGTTATCCAGCATCTGGAGATGGAGCTAAACAGGTGGAGGAATGGTAAGGAAAAGTAAGGAGGAA s panTro4.chr2B 153149371 110 + 247518478 GAAGAAATATGAAAAAGAGAAAGAGAAAAACAAGACTTTGAAGAATGTTATCCAGCATCTGGAGATGGAGCTAAACAGGTGGAGGAATGGTAAGGAAAAGTAAGGAGGAA i panTro4.chr2B C 0 C 0 s nomLeu3.chr20 82303439 110 - 85365473 gaagaaatacgaaaaagagaaagagaaaaacaagaCTTTGAAGAATGTTATCCAGCATCTGGAGATGGAGCTAAACAGGTGGAGGAATGGTAAGGAAAAGTAAAGAGGAA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11917074 110 + 106825570 GAAGAAATATGAAAAAGAAAAAGAGAAAAACAAGACTTTGAAGAATGTTATCCAGCATCTGGAGATGGAGCTGAACAGGTGGAGGAATGGTAAGGAAAAGTAAAGAGGAA i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37621409 110 + 132586672 gaagaaatatgaaaaagaaaaagagaaaaacaagaCTTTGAAGAATGTTATCCAGCATCTGGAGATGGAGCTGAACAGGTGGAGGAATGGTAAGGAAAAGTAAAGAGGAA i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11278590 110 + 104110932 gaagaaatatgaaaaagaaaaagagaaaaacaagactttgaagaaTGTTATCCAGCATCTGGAGATGGAGCTGAACAGGTGGAGGAATGGTAAGGAAAAGTAAAGAGGAA i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34375681 110 + 128595539 gaagaaatatgaaaaagaaaaagagaagaacaagaCTTTGAAGAATGTTATCCAGCATCTGGAGATGGAGCTGAACAGGTGGAGGAATGGTAAGGAAAAGTAAAGAGGAA i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87861169 110 - 158406734 GAAGAAATATGAAAAAGAGAAAGAGAAAAACAAGACTTTAAAGAATGTTATCCAGCATCTGGAGATGGAGCTAAACAGGTGGAGGAATGGTAAGGAGAAGTGGAAAGGAA i calJac3.chr6 C 0 C 0 s mm10.chr2 49710779 110 + 182113224 GAAGAAATATGAAAAAGAGAAAGAGAAGAACAAGGCCTTGAAGAGTGTCCTCCAGCATCTGGAGATGGAGCTGAACAGGTGGAGGAACGGTGAGAGCGAGCGGAGTGGAG i mm10.chr2 C 0 I 438 s canFam3.chr19 50622860 97 + 53741614 GAAGAAATACGAGAAAGAGAAAGAGAAAAACAAGACTCTGAAGAATGTGATCCAGCATCTAGAGATGGAACTGAACCGATGGAGGAACGGTAAGGAG------------- i canFam3.chr19 I 2 C 0 e ponAbe2.chr2b 38352675 1464 + 135000294 M a score=32680.000000 s hg38.chr2_GL582966v2_alt 34156 10 + 96131 GAGTGAGGCA s panTro4.chr2B 153149481 10 + 247518478 GAGTGAGGCA i panTro4.chr2B C 0 C 0 s nomLeu3.chr20 82303549 10 - 85365473 GAGTGAGGCA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11917184 10 + 106825570 GAGTGAGGCA i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37621519 10 + 132586672 GAGTGAGGCA i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11278700 10 + 104110932 GAGTGAGGCG i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34375791 10 + 128595539 GAGTGAGGCA i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87861279 10 - 158406734 GAGTGAGGCA i calJac3.chr6 C 0 C 0 s canFam3.chr19 50622957 10 + 53741614 GAATGAGGCA i canFam3.chr19 C 0 C 0 e ponAbe2.chr2b 38352675 1464 + 135000294 M e mm10.chr2 49710889 438 + 182113224 I a score=478459.000000 s hg38.chr2_GL582966v2_alt 34166 237 + 96131 TGAGTGTGTGC-ttttttt--attttta--ttttttttgagacagagtctctctctgtcactcaggctggagtgcagtggcgtgatcttggctcaccgcaacctctgcctccagggttcaagccattctcctggctcagcctcccgagtagctgggattacaggcgtgcaccaccacacctggctaatttttgtaa--tttttttttttttttttagtagagatgaggttttaccatgttggcc s panTro4.chr2B 153149491 239 + 247518478 TGAGTGTGTGC-ttttttt--attttta--ttttttttgagacagagtctctctctgtcactcaggctggagtgcagtggcgtgatcttggctcaccgcaacctctgcctccagggttcaagccattctcctgcctcagcctcccgagtagctgggattacaggcgtgcaccaccacacctggctaatttttgtaatttttttttttttttttttagtagagatgaggttttaccatgttggcc i panTro4.chr2B C 0 C 0 s nomLeu3.chr20 82303559 214 - 85365473 TGAGTGTGTGCtttttttt--attttta--ttttttttgagacagagtctcgctctgtcactcaggc---------------------cggctcactgcaacctctgcctccagggttcaagccattctcctgcctcagcctcccgagcagctgggattacaggcatgtaccaccacacccggctaatttttgtaa-----tttttgttttttttagtagagatgaggttttaccatgttagcg i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11917194 231 + 106825570 TGAGTGTGTGC-ttttt----attttta-tttttttttgagacagagtcttgctgtgtcactcaggctggagtgcagtggtgtgatctcggctcactgcaacctctgcctccaggattcaaaccattctcctacctcagcctcccgagtagctgggattacaggcacaaaccaccacacccggctaatttttgtaa-------ttttttttttttagtacagatgaggttttaccatgttagtc i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37621529 232 + 132586672 TGAGTGTGTGC-ttttt----atttttattttttttttgagacggagtcttgctgtgtcactcaggctggagtgcagtggtgtgatctcggctcactgcaacctctgcctccaggattcaaaccattctcctacctcagcctcccgagtagctgggattacaggcacgaaccaccacacccggctaatttttgtaa-------ttttttttttttagtacagatgaggttttaccatgttagtc i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11278710 233 + 104110932 TGAGTGtgtgc-ttttttttaattttta--ttttttttgagacagagtcttgctctgtcactcaggctggagtgcagtagtgtgatctcggctcactgcaacctctgcctccaggattcaaaccattctcctacctcagcctcccgagtagctgggattacaggcacgcaccaccacacccggctaatttttgtaa--------tttttttttttagtacagatgaggttttaccatgttagtc i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34375801 235 + 128595539 TGAGTGTGTGC-tttatttttattttta--ttttttttgagacagagtcttgctctgtcactcaggctggagtgcagtgatgtgatctcggctcactgcaacctctgcctccaggattcaaaccattctcctacctcagcctcccaagtagctgggattacaggcacgcaccaccacacctggctaatttttgtaa------tttttttttttttagtacagatgaggttttaccatgttagtc i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87861289 223 - 158406734 TGAG-GTGTG-----------Atttttc--ctttttttaagacagagtgttactctgtcacccaggctggagtgcagtggcgcgacctcagctcaccgcaacctctgccttctaggttcaagccattctcctgtctcagcct-ctgagtagttgggattacaggcacataccaccatacctggctaatttttgtat------tttttttcttttaagtagagatggggttttaccatgttgggt i calJac3.chr6 C 0 C 0 e canFam3.chr19 50622967 0 + 53741614 C e ponAbe2.chr2b 38352675 1464 + 135000294 M e mm10.chr2 49710889 438 + 182113224 I a score=236528.000000 s hg38.chr2_GL582966v2_alt 34403 90 + 96131 aggctggtcttgaactcctgacctcaagtgatccacccaccttggcctcccaaagtgctgggattataaacgtgagccaccgtgcctggc s panTro4.chr2B 153149730 90 + 247518478 aggctggtcttgaactcctgacctcaagtgatccacccaccttggcctcccaaagtgctgggattataaacgtgagccaccgtgcctggc i panTro4.chr2B C 0 C 0 s nomLeu3.chr20 82303773 90 - 85365473 aggctggtcttgaactcctgacctcaagtgattcacccacctcagcctcccaaagtgctgggattatagatgtgagccactgtgcctggc i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11917425 90 + 106825570 aggctggtcttgaactcctgacctcaagtgatccacccacctcggcctcccaaagtgctgggattatagacgtgagccaacatgcgtggc i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37621761 90 + 132586672 aggctggtcttgaactcctgacctcaagtgatccacccacctcggcctcccaaagtgctgggattatagacgtgagccaacatgcgtggc i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11278943 90 + 104110932 aggctggtcttgaactcctgacctcaagtgatccacccacctcggcctcccaaagtgctgggattatagacatgagccaccatgcgtggc i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34376036 90 + 128595539 aggctggtcttgaactcctgacctcaagtgatccacccacctcggcctcccaatgtgctgggattatagacgtgaaccaccatgcgtggc i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87861512 90 - 158406734 aggctggttttgaactcctgacctcaagtgatccacccacctaggcctcctaaagtgttgggattacaggcatgagccaccgtgcctggc i calJac3.chr6 C 0 C 0 s mm10.chr2 49711327 87 + 182113224 aggttagact--agttcgtgtgccccatggatccgtctgtctccacctcccca-gctctaggattacaagcgcatgccaccatgcctgac i mm10.chr2 I 438 C 0 e canFam3.chr19 50622967 0 + 53741614 C e ponAbe2.chr2b 38352675 1464 + 135000294 M a score=63259.000000 s hg38.chr2_GL582966v2_alt 34493 26 + 96131 cGTGTGTGTGCTTTCTTTTTCTTGTG s panTro4.chr2B 153149820 26 + 247518478 cGTGTGTGTGCTTTCTTTTTCTTGTG i panTro4.chr2B C 0 C 0 s nomLeu3.chr20 82303863 26 - 85365473 cATGTGTGTGCTTTCTTTTTCTTGTG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11917515 26 + 106825570 cGAGTATGTGCTTTCTTCTTCTTGTG i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37621851 26 + 132586672 cGAGTATGTGCTTTCTTCTTCTTGTG i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11279033 26 + 104110932 caaGTATGTGCTTTCTTCTTCTTGTG i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34376126 26 + 128595539 cGAGTATGTGCTTTCTTCTTCTTGTG i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87861602 26 - 158406734 cGAATATGTGCCTTCTTTTTCTTGTG i calJac3.chr6 C 0 C 0 s mm10.chr2 49711414 11 + 182113224 a---------------tttttatgtg i mm10.chr2 C 0 I 62 s canFam3.chr19 50622967 26 + 53741614 CGGACGTGTGTTTGCCTTTTCCTGGG i canFam3.chr19 C 0 C 0 e ponAbe2.chr2b 38352675 1464 + 135000294 M a score=298965.000000 s hg38.chr2_GL582966v2_alt 34519 117 + 96131 ACTGTTGGCATCCTGGGAGACACTTGGGAAAGTTGGGGCAATGGTGCAGCTTGATTCCTCCTGGCAACAACCTGTATGAACAAGCAGATGTTTTCTTAGTCCCTAACACAGGCACCA s panTro4.chr2B 153149846 117 + 247518478 ACTGTTGGCATCCTGGGAGACACTTGGGAAAGTTGGGGCAATGGTGCAGCTTGATTCCTCCTGGCAACAACCTGTATGAACAAGCAGATGTTTTCTTAGTCCCTAACACAGGCACCA i panTro4.chr2B C 0 C 0 s nomLeu3.chr20 82303889 117 - 85365473 ACTGTTGGCGTCCTGGGAGACACTTGGGAAAGTCGGGGCAATGGTGCAGCTTGATTCCTCCTGGCAACAACCTGTATGAACAAGCAGATGTTTTCTTAGTCCCTAACACAGGCACCA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11917541 117 + 106825570 ACTGTTGGCATCCTGGGAGGCACTTGGGAAAGCTGGGACAATGGTACAGCTTGATTCCTCCTGGCAACAACCTGTATGAACAAGCAGAGATTTTCTTAGTCCCTAACACAGGCACCA i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37621877 117 + 132586672 ACTGTTGGCATCCTGGGAGGCACTTGGGAAAGCTGGGACAATGGTACAGCTTGATTCCTCCTGGCAACAACCTGTATGAACAAGCAGAGATTTTCTTAGTCCCTAACACAGGCACCA i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11279059 117 + 104110932 ACTGTTGGCATCCTGGGAGGCACTTGGGAAAGCTGGGACAATGGTACAGCTTGATTCCTCCTGGCAACAACCTGTATGAACAAGCAGAGATTTTCTTAGTCCCTAACACAGGCACCA i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34376152 117 + 128595539 ACTGTTGGCATCCTGGGAGGCACTTGGGAAAGCTGGGACAATGGTACAGCTTGATTCCTCCTGGCAACAACCTGTATGAACAAGCAGAGATTTTCTTAGTCCCTAACACAGGCACCA i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87861628 114 - 158406734 ACTGTTGGCATCCTGGGAGACACTTGGGAAAGTTGGGACAAT-GTGCAGCTTGGTTCCTTCTGCCAACAACCTGTGTGAACTGGAAGATG--CTCTTAGTCCCTAACACAGGCGCCA i calJac3.chr6 C 0 C 0 s canFam3.chr19 50622993 98 + 53741614 GCAGCCGGGATCCTGG--GTCACTTGGGGAGGAGGGGACGGTGGTGGAGCTCGGTCCCGCCTCGCAGCAGCCCGTGTGTGCGAGT-GAGGTTTTC----TCTCTG------------ i canFam3.chr19 C 0 C 0 e ponAbe2.chr2b 38352675 1464 + 135000294 M e mm10.chr2 49711425 62 + 182113224 I a score=2012300.000000 s hg38.chr2_GL582966v2_alt 34636 669 + 96131 TCCCCATCCCATCACTTGGCTAGCATGCATTGTTAGTGTGGACCAGTGATTATCTGCAAGGCTGCCTTAATCTGCTTCCAATGAGATGCACT-CT-ATCTAATATTGTAATAACTTGCT---GGTACCCCTATTTGTAGGTTAGAGGAAAGTGCCTGAGACTTAGTGGCT------------CAGACTGCTTTTGACTTAAATGAAAAATGTCATTCTCTCCTATGTGAGTTTTATTACTGGTTTGGGGTTAAAAGTCTACCTCTGGCAAATACTTGCATTTTTTG---------------GCTGAACTCATC-TTCAT----------------GCCAGAAATATAGGGCTCTCAAAGGAGCCCTGTGCTAAAATGGAGTCTTAAAGGCTTGGTTCGTGAC--------------TCGTTTT----CCTTCTTCCCC---AAAACATTTTCTTTGGTTTGTTCTACTGGGAGAAAATATCTCAGAGAGCTGACATGCAgtgggtgggtgggttgtgggtgaggtgTT-AAGAGGGGTTTCCAGATCTAAGTGCAGACAGATTATTTTAGTGATTTTAGCATTGTGACGTAGGTTAGAAGGTAGAAGGC-ttt--------------------------ttttttttttctttttAACT-AAAATAAGGCAGGTTGGTG-TGTGTGTAGGGGAATGGCGGATAGTTGGAAG----TTGTTCTTCAGGTCC-TCTGCTGCTGTGT----T-CA--GTATTTTA-GGTGCTGCAGCTGTACCTC s panTro4.chr2B 153149963 673 + 247518478 TCCCCATCCCATCACTTGGCTAGCATGCATTGTTAGTGTGGACCAGTGATTATCTGCAAGGCTGCCTTAATCTGCTTCCAATGAGATGCACT-CT-ATCTAATATTGTAATAACTCGCT---GGTACCCCTATTTGTAGGTTAGAGGAAAGTGCCTGAGACTTAGTGGCT------------CAGACTGCTTTTGACTTAAATGAAAAATGTCATTCTCTCCTATGTGAGTTTTATCACTGGTTTGGGGTTAAAAGTCTACCTCTGGCAAATACTTGCATTTTTTG---------------GCTGAACTCATC-TTCAT----------------GCCAGAAATATAGGGCTCTCAAAGGAGCCCTGTGCTAAAATGGAGTCTTAAAGGCTTGGTTCGTGAC--------------TCGTTTT----CCTTCTTCCCC---AAAACATTTTCTTTGGTTTGTTCTACTGGGAGAAAATATCTCAGAGAGCTGACATGCAGTGGGTGGGTGGGTTGTGGGTGAGGTGTT-AAGAGGGGTTTCCAGATCTAAGTGCAGACAGATTATTTTAGTGATTTTAGCATTGTGACGTAGGTTAGAAGGTAGAAGGCTTTT--------------------------TTTTTTTTTTCTTTTTAACT-AAAATAAGGCAGGTTGGTG-TGTGTGTAGGGGAATGGCGGATAGTTGGAAG----TTGTTCTTCAGGTCCTTCTGCTGCTGTGT----TCCA--GTATTTTATGGTGCTGCAGCTGTACCTC i panTro4.chr2B C 0 C 0 s nomLeu3.chr20 82304006 668 - 85365473 ACCCCATCCCATCACTTGGCTAGCATGCATTGTTACTGTGGACCAGTGATTATCTGCAAGGCTGCCTTAATCTGCTTCCAATGAGATGCCCT-CT-ATCTAACATTGTAATAACTCGCT---GGTACCCCTATTTGTAGGTTAGAGGAAAGTGCCTGAGACTTAGTGGCT------------CAGACTGCTTTTGACTTAAATGAAAAATGTCATTCTCTCCTATGTGAGTTTTATCACTGGTTTGGGGTTAAAAGTCTACCTCTGGCAAATACTTACATTTTTTG---------------GTTGAACTCATC-TTCAT----------------GCCAGAAATATAGGGCTCTCAAAGGAGCCCTGTGCTAAAATGGAGTCTTAAAGGCTTGGTTCGTGAC--------------TCGTTTT----CCTTCTTCCCC---AAAACATTCTCTTTGGTTTGTTCTACTGGGAGAAAATATCTCAGAGAGCTGACATGCAgtgggtgggtgggttgtgggtgaggtgTT-AAGAGGGGTTTCCAGATCTAAGTGCAGACAGATTATTTTAGTGATTTTAGCATTGTGACGTAGGTTAGAAGGTAGAAGGC--TT--------------------------TTTTTTTTCTCTTTTTAACT-AAAATAAGGCAGGTTGGTG-TGTGTGTAGGGGAATGGCGGATAGTTGGAAG----TTGTTCTTCAGGTCC-TCTGCTGCTGTGT----T-CA--GTATTTGA-GGTGCTGCAGCAGTACCTC i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11917658 673 + 106825570 TCCCCATCCCATCACTTGGCTAGCATGCATTGTTAGTGTGGACCAGTGATTATCTGCAAGACTGCCTTAATCTGCTTCCAGTGAGATGCCCT-CT-ATCCAATATTGTAATAACTTGCT---GGTACCCCTATTTGTAGGTTAGAGGAAAGTGCCTGAGACTTAGTGGCT------------CAGACTGCTTTTGACTTAAATGAAAAATGTCATTCTCTCCTATGTGAGTTTTATCACTGGTTTGGGGTTAAAAGTCTACCTCTGGCAAATACTTGCATTTTTTG---------------ACCGAACTCATC-TTCAT----------------GCCAGAAATATAGGGCTCTTGAAGGAGCCCTGTGCTAAAATGGAGTCTTAAAGGCTTGGTTCGTGAC--------------TCGTTTT----CCTTCTTCCCC---AAAACATTCTCTTTGGTTTGTTCTACAGGGAGAAAATATCTCAGAGAGCTGACATGCAGTGGGTGGGTGGGTTGTGGGTGAGGTGTT-AAGAGGGGTTTCCAGATCTAAGTGCAGACAGATTATTTTAGTGATTTTAGCATTGTGACGTAGGTTAGAAGGTAGAAGGCTTTTTAA-----------------------TTTTTTTTTTCTTTTTAACT-AAAATAAGGCAGGTTGGTG-TGTGTGTAGGGGAATGGCGGATAGTTGGAAG----TGGTTCTTCAGGTCC-TCTGCTGCTGTAC----T-CA--GTACTTTA-GGTGCTGCAGCAGTGCCTT i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37621994 673 + 132586672 TCCCCATCCCATCACTTGGCTAGCATGCATTGTTAGTGTGGACCAGTGATTATCTGCAAGACTGCCTTAATCTGCTTCCAGTGAGATGCCCT-CT-ATCCAATATTGTAATAACTTGCT---GGTACCCCTATTTGTAGGTTAGAGGAAAGTGCCTGAGACTTAGTGGCT------------CAGACTGCTTTTGACTTAAATGAAAAATGTCATTCTCTCCTATGTGAGTTTTATCACTGGTTTGGGGTTAAAAGTCTACCTCTGGCAAATACTTGCATTTTTTG---------------ACCGAACTCATC-TTCAT----------------GCCAGAAATATAGGGCTCTTGAAGGAGCCCTGTGCTAAAATGGAGTCTTAAAGGCTTGGTTCGTGAC--------------TCGTTTT----CCTTCTTCCCC---AAAACATTCTCTTTGGTTTGTTCTACAGGGAGAAAATATCTCAGAGAGCTGACATGCAgtgggtgggtgggttgtgggtgaggtgTT-AAGAGGGGTTTCCAGATCTAAGTGCAGACAGATTATTTTAGTGATTTTAGCATTGTGACGTAGGTTAGAAGGTAGAAGGCTTTTTAA-----------------------TTTTTTTTTTCTTTTTAACT-AAAATAAGGCAGGTTGGTG-TGTGTGTAGGGGAATGGCGGATAGTTGGAAG----TGGTTCTTCAGGTCC-TCTGCTGCTGTAC----T-CA--GTACTTTA-GGTGCTGCAGCAGTACCTC i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11279176 673 + 104110932 TCCCCATCCCATCACTTGGCTAGCATGCATTGTTAGTGTGGACCAGTGATTATCTGCAAGACTGCCTTAATCTGCTTCCAGTGAGATGCCCT-CT-ATCCAATATTGTAATAACTTGCT---GGTACCCCTATTTGTAGGTTAGAGGAAAGTGCCTGAGACTTAGTGGCT------------CAGACTGCTTTTGACttaaatgaaaaatgtcattCCCTCTTATGTGAGTTTTATCACTGGTTTGGGGTTAAAAGTCTACCTCTGGCAAATACTTGCATTTTTTG---------------ACCGTACTCATC-TTCAT----------------GCCAGAAATATAGGGCTCTTGAAGGAGCCCTGTGCTAAAATGGAGTCTTAAAGGCTTGGTTCGTGAC--------------TCGTTTT----CCTTCTTCCCC---AAAACATTCTCTTTGGTTTGTTctactgggagaaaatatctcaGAGAGCTGACATGCAGTGGGTGGGTGGGTTGTGGGTGAGGTGTT-AAGAGGGGTTTCCAGATCTAAGTGCAGACAGATTATTTTAGTGATTTTAGCATTGTGACGTAGGTTAGAAGGTAgaaggctttttaa-----------------------ttttttttttctttttaact-aaaaTAAGGCAGGTTGGTG-TGAGTGTAGGGGAATGGCGGATAGTTGGAAG----TGGTTCTTCAGGTCC-TCTGCTGCTGTAC----T-CA--GTACTTTA-GGTGCTGCAGCAGTACCTC i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34376269 674 + 128595539 TCCCCATCCCATCACTTGGCTAGCATGCATTGTTAGTGTGGACCAGTGATTATCTGCAAGACTGCCTTAATCTGCTTCCAATGAGATGCCCT-CT-ATCCAATATTGTAATAACTTGCT---GGTACCCCTATTTGTAGGTTAGAGGAAAGTGCCTGAGACTTAGTGGCT------------CAGACTGCTTTTGACTTAAATGAAAAATGTCATTCTCTCCTATGTGAGTTTTATCACTGGTTTGGGGTTAAAAGTCTACCTCTGGCAAATACTTGCATTTTTTG---------------ACCGAACTCATC-TTCAT----------------GCCAGAAATATAGGGCTCTTGAAGGAGCCCTGTGCTAAAATGGAGTCTTAAAGGCTTGGTTCGTGAC--------------TCGTTTT----CCTTCTTCCCC---AAAACATTCTCTTTGGTTTGTTCTACTGGGAGAAAATATCTCAGAGAGCTGACATGCAgtgggtgggtgggttgtgggtgaggtgTT-AAGAGGGGTTTCCAGATCTAAGTGCAGACAGATTATTTTAGTGATTTTAGCATTGTGACGTAGGTTAGAAGGTAGAAGGCtttttaa----------------------tttttttttttctttttAACT-AAAATAAGGCAGGTTGGTG-TGTGTGTAGGGGAATGGCGGATAGTTGGAAG----TGGTTCTTCAGGTCC-TCTGCTGCTGTAC----T-CA--GTACTTTA-GGTGCTGCAGCAGTACCTC i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87861742 677 - 158406734 TCCCCATCCCATCATTTGGCTAGCATGCATTGTTAGTGTGGACCAGTGACTATCTGCAAGGTTGCCTTAATCTGCTT-CGATGAGATGCCCT-CT-CTCTATTATTGTAATAACTCTCT---GGTACCCCTATTTGTAGGTTAGAGGAAAGTGCCTGAGACTCGGTGGCT------------CAGATTGCTTTTGACTTAAATGAAAAATGTCATACTCTCCTATGTGAGTTTTATCACTGGTTTGGGGTTAAAAGTCTACCTCTGGAAAATACTTGCATTTTTTG---------------GCTGAACTCATT-TTCATGCTCTGCTTCTTCAGAGCCAGAAATATAGGGCTCTCGGAGGAGCCCTGTGCTAAAATGGAGTCTTAAAGGCTTGGTTCGTGAC--------------TCGTTTT----CCTTC-TCCCC---AAAACATTCTCTTTGGTTTGTTCTACTGGGAGAAAATATCTCAGAGAGCTGACATGCAGTGGGTGGGTGGGTTGTGGGTGAGGTGTT-AAGAGGGGTTTCCAGATCTAAGTGCAGACAGATTATTTTAGTGATTTTAGCATTGTGACGTAGGTTAGAAGGTAGAAGCC------------------------------TTTTTTTTC---TTTTAACT-AAAATAAGGCAGGTTGGTG-TGTGTATAGGGGAATGGCGGATAGTTGGAAG----CTGTTCTTCAGGTCC-TCTGCTGCTGTGT----T-CA--GTATTTTA-GGCACTGCAGCAGGACCTT i calJac3.chr6 C 0 C 0 s mm10.chr2 49711487 612 + 182113224 tccccatcc-------TGGCTAG---------------------------------------------AGTCTGTTTC-----AGATGCTCTGTT-TTTTCATGTTGCTGTCCTTCATTTCAGGGATCCTGGCTTCATGGTTACAGGAGAGCTTCTGAGACTTTTTTTTTTTTTTTCTAATACCAATTGCTTTGG--CTAAATGAAAACTAGGATTTGCTTC------AGTCTTGCCATTTACTTGTGGGTAAATGTC-ACCTCTGGCCAGAACTTGCCTTTTCTG---------------ACCTGCCTCACCATTCAG-------TTCCTCAGAGTGAGACATAGTGGGCT---GAAGAAACCCTTTGCTAAGATGGACCCTGACAGGCCTGCTTCATGAC--------------CAGTTTTTCCGCCCCCTTCTTC---AG-----TCTCTTTGGTTTGCTCTA-TAGGAGAAAATATCTCCTAGAGCTGGCGTGAAGCGGGTGGGTGGGTTGTGGGGGAGGTGTA-AGGGGTGGCTTCCAGATTCCGG-GCAGACATATTATTTTGGTGACTTTAGCATTATGACAGAGCTCAGACGGTAGCAGTC---------------------------------------TCTTTTAATCTGGAAGCAAAGCAAGTTGGAGCTGTGTGTCAGAGGACGGC-AATAGCTAGAAGTCATTTGTTCCTCAGATCC-CTTGCTTCCCTGTGGTGT-GT--GTATTTCA-GCAGCTACTGC-------- i mm10.chr2 I 62 C 0 s canFam3.chr19 50623091 721 + 53741614 CCCGAACCCCAGTCATTGGCGGACGTGTGTGCTTCGTGTGGGCAAGTGGCTGTTTGCAGGGTTGCCTTA-TCTCTTTCCGATGACGTGCTCC-CCGATCTGTTATTGCAGT-TCTCTCT---GCTAGCCCCAGCTGAGGTTTAGAGGGCAGGGCTCGAGACTTTGTGGCT------------CAGATTGCTTTTGG-TTAAATGAAAAATGTCATTCTCTCCTATGTGAGTCTTATAATTGATTTAGGGTTAAAAGTC-AGCTTTGACAAATATTTGCAATTGGTGGGGGGGGAGGAGGGCGTCCAAGGGATC-TTCATGCTCTGCTTCTTCAGAGCCAGAAATAGAGGGCTCCTAAAGAAGCTCTGTACTAAAATGGAGTCTTACAGGCTTATTTCGTGACTGTGttttttttttttttttt----ttttATTCTCCGAAAAAACATTCTCTTTGGTTTGT--TACTCAAAGAAAATATCTCCGAGAGCTGACACACACTGGGTGGGTGGGTTGTGGGTGAGGCGTTGAAGAGGGGTTTCCAGATCCAAGTGCAGACAGATTATTTCGGAAATTTTAGCATTGTGATGGAA-TTAGAAGGTAGAAGTCTTTTGCtttttcttttctttttcttttttttctttttttttttttAAACT-GAA--CAGGCAGGCTGGTG-TGTGT---AGGGCACAGTGGATAGCTGGAGA----T---------------TCGGATGCTGTGT----C-CACTGTACCTGA-GGCGCTGCTGCAG-ACCTC i canFam3.chr19 C 0 C 0 e ponAbe2.chr2b 38352675 1464 + 135000294 M a score=140668.000000 s hg38.chr2_GL582966v2_alt 35305 47 + 96131 --AGCTTTGGG-----TAAGGG--TAGGAGCCCGGGGG-CTGTTGTGCAGGATTGGG s panTro4.chr2B 153150636 50 + 247518478 --ACCTTTGGG-----TAAAGGGTTAGGAGCCCGGGGGCCTGTTGTCCAGGACTGGG i panTro4.chr2B C 0 I 54 s ponAbe2.chr2b 38354141 47 + 135000294 --AGCTTTGGG-----TAAGGG--TAGGAGCCCGGGGG-CTGTTGTGCAGGATCGGG i ponAbe2.chr2b M 1464 C 0 s nomLeu3.chr20 82304674 47 - 85365473 --AGCTTTGGG-----TATGGG--TAGGAGCCCGGGGG-CTGTTGTGCAGGATCGGG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11918331 47 + 106825570 --AGCTTTGGG-----TAAGTG--TAGGAGCCCGGGGG-CTGTTGGGCAGGATCTGG i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37622667 47 + 132586672 --AGCTTTGGG-----TAAGTG--TAGGAGCCCGGGGG-CTGTTGGGCAGGATCTGG i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11279849 47 + 104110932 --AGCTTTGGG-----TAAGGG--TAGGAGCCCGGGGG-CTGTTGGGCAGGATCTGG i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34376943 47 + 128595539 --AGCTTTGGT-----TAAGGG--TAGGAACCCGGGGG-CTGTTGGGCAGGATCCGG i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87862419 47 - 158406734 --GGCTTTGGA-----TAGGGG--TAGGAGCTTGGGGG-TTATTGTGCAGGACCGGG i calJac3.chr6 C 0 C 0 s mm10.chr2 49712099 51 + 182113224 --AGCCTGTGGTGCCCTGAGAG--AAGGGGCCTGGGGA-TTGCTGAGCTGGTCTGG- i mm10.chr2 C 0 C 0 s canFam3.chr19 50623812 47 + 53741614 AGTCTCTTGGG-----TGAGCG--TCGGAGCCTGGGG--CTGCC-CGCAGGGTTGGG i canFam3.chr19 C 0 C 0 a score=840580.000000 s hg38.chr2_GL582966v2_alt 35352 254 + 96131 AGGTAATGCTGACTGT----AACTGC-------------AGCAGATTGTCTTGTGATTACACGTTTGCCACTGCTTTTTGCTAGTAAGGGTGGGGTGTCAATGAGC--TA-TTGTTTAATAGAAAAACAATTACGTGGCAAACGAGAATTCAAGACAGGTTTCAAAAATGACCTAGTAGTCTAAATAACATGATTCTTTTA-TTTTTGAAAGATTTTCTAGCAGCACACGTGTTTGGAAAGCTACTAGAATAATTGAATAATTCAGCACCTGAGG s ponAbe2.chr2b 38354188 258 + 135000294 AGGTAACGCTGACTGTTTGTAACTGC-------------AGCAGATTGTCTTGTGATTACATGTTTGTCACTGCTTTTT-CTAGTAAGGGTGGGGTGTCAATGAGC--TA-TTGTTTAATAGAAAAACAATTACGTGGCAAACGAGAATTCAAGACAGGTTTCAGAAATGACCTAGTAGCCTAAATAACATGATTCTTTTATTTTTTGAAAGATTTTCTAGCAGCACACGTGTTTGGAAAGCTACTAGAATAATTGAATAATTCAGCACCTGAGG i ponAbe2.chr2b C 0 M 2961 s nomLeu3.chr20 82304721 258 - 85365473 AGGTAACGCTGACTGTTTGTAACTGC-------------AGCAGATTGTCTTGTGATTACATGTTTGCCACTGCTTTTTGCTAGTAAGGGTGGGGTGTCAATGAGC--TA-TTGTTTAATAGAAAAACCATTACGTGGCAAACAAGAATTCAAGACAGGTTTCAAAAATGACCTAGTAGCCTAAATAACATGATTCTTTTA-TTTTTGAAAGATTTTCTAGCAGCACACATGTTTGGAACGCTGCTGGAATAATTGAATAATTCAGCACCTGAGG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11918378 258 + 106825570 AGGTAACACTGACTGTTGGTAACTGC-------------AGCAGATTGTCTTGTGATTACATGTTTGCCACTGCTTTTTGCTAGTAAGGGTGAGGTGTCAATGAGC--TA-TTGTTTAATAGAAAAACAATTACGTGGCAAACGAGAATTCAAGACAGGTTTCAAAAATGACCTAGTAGCCTAAATAACATGATTCTTTTA-CTTTTGAAAGATTTTCTAGCAGCACACGTGTTTGGAAAGCTGCTAGAATAATTGAATAATTCAGCACCTGAGG i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37622714 258 + 132586672 AGGTAACACTGACTGTTGGTAACTGC-------------AGCAGATTGTCTTGTGATTACATGTTTGCCACTGCTTTTTGCTAGTAAGGGTGAGGTGTCAATGAGC--TA-TTGTTTAATAGAAAAACAATTACGTGGCAAACGAGAATTCAAGACAGGTTTCAAAAATGACCTAGTAGCCTAAATAACATGATTCTTTTA-CTTTTGAAAGATTTTCTAGCAGCACACGTGTTTGGAAAGCTGCTAGAATAATTGAATAATTCAGCACCTGAGG i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11279896 258 + 104110932 AGGTAACACTGACTGTTTGTAACTGC-------------AGCAGATTGTCTTGTGATTACATGTTTGCCACTGCTTTTTGCTAGTAAGGGTGAGGTGTCAATGAGC--TA-TTGtttaatagaaaaacaattacGTGGCAAACGAGAATTCAAGACAGATTTCAAAAATGACCTAGTAGCCTAAATAACATGATTCTTTTA-CTTTTGAAAGATTTTCTAGCAGCACACGTGTTTGGAAAGCTGCTAGAATAATTGAATAATTCAGCACCTGAGG i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34376990 256 + 128595539 AGGTAACACTGACTGTTCGTAACTGC-------------AGCAGATTGTCTTGTGATTACATGTTTGCCACTGCTTTTTGCTAGTAAGGGTGAGGTGTCAATGAGC--TA-TTGTTTAATAGAAAAACAATTACGTGGCAAACGAGAATTCAAGACAGGTTTCAAAAATGACCTAGTAGCCTAAATAACATGATTCTTTTA-C-TTTGAAAGATTTTCTAGCAGCACACGTGTTTGGAAAGCTGCTAGAATAATTGAATAATTCAGCACCTGA-G i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87862466 260 - 158406734 AGGTAACGCTGACTGTTTGTAACTGC-------------AGCAGATTGTCTTGTGATTACATGTTTGCCACTGCTTTTTGCTAGTAAGGGTGGGGTGTCAATGAGCTATA-TTGTTTAATAGAAAAACGATTACGTGGCAAACAAGACTTCAAGACAGGTTCCAAAAATGACCTAGTAGCCTAAATAATATGATTCTTTTC-TTTTTGAAAGATTTTCTAGCTGCACACGTGTTTGGAAAGCTGCTAGAATAATTGAATAATTCATCACCTGGGG i calJac3.chr6 C 0 C 0 s mm10.chr2 49712150 268 + 182113224 AGGTAGCAGGGTCTGTTTGCAGCTGCGCAGAGAGCTGGAAGCCGATTG-CTGGTGATGGTA--TTTGTTGCTGCTCCTTGCTAGTAAGGATTGGGTATCAACGAGC--CACTTATTCACTTGAGAAGCAATTACGTGGCAAACAAGAATTCAAGAGAGGATCAAAATTTGACCCAGTAGCCTAAATAACAGGATTTTCTTC-TCTTCGGAAGCATTTCTAGCTACACATGTGTTTCAAAAGGTGCTAGAATAATTGAATAACTCAGCACCTGAG- i mm10.chr2 C 0 C 0 s canFam3.chr19 50623859 250 + 53741614 -GGGAGC-CCGCCTGTAGGTAACTGC-------------AG------ACTTAGCGCTTCTGCGTTTGCCGCCGTGCTGTGCTAGGAAAGGTGGGGTGCCGATGACC--TA-CTATTCAATGGAAAAACAATTATGAAGCAAAGCGGGATTCAGGAGAGGTTCGAGAAGTGACCTAGTAGCCTAAATAACACAATTCTTTTC-TTTTTGGGAGATTTTCTAGCTGCACACATGTTTTGAAAGCGGCTACAATAATTGAATAATTCAGCACCTGGGG i canFam3.chr19 C 0 C 0 e panTro4.chr2B 153150686 54 + 247518478 I a score=877618.000000 s hg38.chr2_GL582966v2_alt 35606 386 + 96131 CTGGTGGATGATTCTTTGCAATTTGGCAGGAA-TGGGAGAGTCGG--GAGCAGTAGTTGGCAAGGTGGGGAGTAGCCATATGAAGTTTTAT-----TTCGGGAATCC-TC-CAGGTCAGTTCTCTGTTGGGTGACCAGGACATTCAGTAAAGCCTTTTGGTAAAGGATTGG-GGGTGCTGGCTTTAGAAACATTACAGGGTGGGCAATGAACCTT-T--TTTCCCCCATCATTTTGCATCTCTTGCCAAACTTTAACCTTGCAGTTCTCCATCCCTCATCAAATGCCATCCTCTGGGATCTG--CCCATTGCCTTGTTTGCCTGACTCACCATCATGCTTAGCATCTTTT--GGGCACTCAGTCCT---GTTTTTGGCCTCTTTACTTGGACATCATTTTAAC----TGTC s nomLeu3.chr20 82304979 386 - 85365473 CTGGTGGATGATTCTTTGCAATTTGGCAGGAA-TGGGAGAGTCAG--GAGCAGTAGTTGGCAAGGTGGGGAGTGGCCATATGAAGTTTTAT-----TTCGGGAATCC-TC-CAGGTCAGTTCTCTGCTGGGTGACCAGGACATTCAGTAAAGCCTTTTGGTAAAGGATTGG-GGGTGCTGGCTTTAGAAACATTACAGGATGGGCAATAAACCTT-T--TTTCCCCCATCCTTTTGCATCTCTTGCCAAACTTTAACCTTGCAGTTCTCCATCCCTTATCAAATGCCATCCTCTGGGATCTG--CCCATTGCCCTGTTTGCCTGACTCACTGTCATGCCTAGCATCTTTT--GGGCACTCAGTCCT---GTTTTTGGCCTCTTTACTTGGACATCATTTTAAC----TGTC i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11918636 374 + 106825570 CTGGTGGATGATTCCTTGCAATTTGGCAGGAA-TGGGAGAGTCGG--GAGCAGTAGTTGGCAAGGTGGGGAGTAGCCATATGAAGTTTTAT-----TTCGGGAATCC-TC-CAGGTCAGTTCTCTGTTGGGTGACCAGGACATTTAGTAAAGGCTTTTGGTAAAGGATTGG-AGGTGCTGGCTTTAGAAACATTACAGGGTGGACAATGAACCTT-T--TTTCTCCCATCCTTTTCCATCTCTTGCCGAACTTTAACCTTGAAGTTCTCTATCCCTCATCAAATGCCATCCTCTGGGATCTG--CCCACTGCCCTGTTTGCCTGACTCACCGTCATGCCTAGCATCTTTT--GGGCACTCAGTCCT---GTTTTTGGCCTCTTTAC------------TTAAC----CGTC i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37622972 374 + 132586672 CTGGTGGATGATTCCTTGCAATTTGGCAGGAA-TGGGAGAGTCGG--GAGCAGTAGTTGGCAAGGTGGGGAGTAGCCATATGAAGTTTTAT-----TTCGGGAATCC-TC-CAGGTCAGTTCTCTGTTGGGTGACCAGGACATTTAGTAAAGCCTTTTGGTAAAGGATTGG-AGGTGCTGGCTTTAGAAACATTACAGGGTGGACAATGAACCTT-T--TTTCTCCCATCCTTTTCCATCTCTTGCCGAACTTTAACCTTGAAGTTCTCTATCCCTCATCAAATGCCATCCTCTGGGATCTG--CCCACTGCCCTGTTTGCCTGACTCACTGTCATGCCTAGCATCTTTT--GGGCACTCAGTCCT---GTTTTTGGCCTCTTTAC------------TTAAC----CGTC i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11280154 386 + 104110932 CTGGTGGATGATTCCTTGCAATTTGGCAGGAA-TGGGAGAGTCGG--GAACGGTAGTTGGCAAGGTGGGGAGTAGCCATATGAAGTTTTAT-----TTCGGGAATCC-TC-CAGGTCAGTTCTCTGTTGGGTGACCAGGACATTTAGTAAAGCCTTTTAGTAAAGGATTGG-AGGTGCTGGCTTTAGAAACATTACAGGGTGGACAATGAACCTT-T--TTTCTCCCATCCTTTTCCATCTCTTGCCGAACTTTAACCTTGCAGTTCTCTATCCCTCATCAAATGCCATCCTCTGGGATCTG--CCCACTGCCCTGTTTGCCTGACTCACCGTCATGCCTAGCATCTTTT--GGGCACTCAGTCCT---GTTTTTGGCCTCTTTACTTGGACATCATTTTAAC----CATC i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34377246 386 + 128595539 CTGGTGGATGATTCTTTGCAATTTGGCAGGAA-TGGGAGAGTCGG--GAGCAGTAGTTGGCAAGGTGGGGAGTAGCCATATGAAGTTTTAT-----TTCGGGAATCC-TC-CAGGTCAGTTCTCTGTTGGGTGACCAGGACATTTAGTAAAGCCTTTTGGTAAAGGATTGG-AGGTGCTGGCTTTAGAAACATTACAGGGTGGACAATGAACCTT-T--TTTCTCCCATCCTTTTCCATCTCTTGCCAAACTTTAACCTTGCAGTTCTCTATCCCTCATCAAATGCCATTCTCTGGGATCTG--CCCACTGCCCTGTTTGCCTGACTCACCGTCATGCCTAGCATCTTTT--GGGCACTCAGTCCT---GTTTTTGGCCTCTTTACTTGGACATCATTTTAAC----TGTC i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87862726 390 - 158406734 CTGGTGGATGATTCCTTACAATTTGGCAGGAG-TGGGAGACAAGG--GAGCAGTAGCTGGCAAGGTGGGGAGCGGCTATATGAAGTTTTAT-----TTCTGGAATCC-TC-TAGGTCAATTCTCTGTTGGGTGACCAGGACATTCAGTAAAGCCTTTTGGTAAAGGACTGGCAGGGTCTGACTTTAGAAACATTACAGGGTGGGCAATTGACCTT-TTCTTTCTCCCATCCTTTTCCATCTCTTGCCAAACTTTAACCTTGCAGTTCTTCATCCCTCATCGAATGCCATTCTCTGGGATCTG--CCCCTTGCCCTGTTTGCCTGACTAACCACCATGCCTAGCATCTTTT--GGGCACTCAGTCCT---ATTCTTGGCTTCTTTACTTGGGCATT---TTAACTGTTTGTC i calJac3.chr6 C 0 C 0 s mm10.chr2 49712418 380 + 182113224 CTGAATGATGA-TCCCTGCAGTTTGGCAGGAG-CAGCAGAGTCGGGTGTGTGGAAATTGG---GATGGGAGGTGGCTATGGGAAGCTTTGTGGTGGCTCTGGAATCCTTT-CGGGTCAAATCCCTGTGGGATGACTCGGCCACTTAGTAAAGCCCTTTGGTGTGACGTTGG--CTCACTGGCCCTAGAAGCATTCTGAGTTGGACAATAACCTTG-T--TTT----AATCGTTTCTCATCTCTTGCCCGACTCTAGCAGACCAGTTCTCCAACACATATCCAGTGCCACCTTGTGGAATCTG--CTC--TGCCTCATTTGCCTGACTTCCTG-CATGCCTAGCATCTTTTTGGGGTCCTGCATCCT---A---TTGGCTTCTTTATAT-GCCACCACTTTAAC----TGTC i mm10.chr2 C 0 I 12 s canFam3.chr19 50624109 382 + 53741614 CCCGTGGCTGATTCCTTGCGATTTGGCAGGAGTTAGGAGAGTGGG--GAGGGATGGTTGGCAAGGCAGGGAGCGGTCGTATGAAATTTTGTTCTATTTCTGGGATCC-TCTTGGGTCAGTTCTCTGCTGGGCAACTGGAACATTCAGTAAAGCCTTTTGGTAAAGG---GA-GGGAGCCTGGTCTAAGAACACTGTGCAGCGGGCAACTGGCCTTGT--TTTTTTCTCTTCTGTCCTAGCCCTTGCCAAGCTCTCACCCTGCAGTGCTCCATCTCTCCACCAGCTCTGTCCTCAGGGGTCTGGCCCCGCCGCCCTGTTTGCCT-ACTCACCCTCCTGCCC------------GGGCAC--AGTCCCTTGGCTGTTGGACTTTTAACTT-GGCATCGTTTTAAT----TGTC i canFam3.chr19 C 0 C 0 e panTro4.chr2B 153150686 54 + 247518478 I e ponAbe2.chr2b 38354446 2961 + 135000294 M a score=77060.000000 s hg38.chr2_GL582966v2_alt 35992 37 + 96131 ACTCTTCGAACACCTTGCGAATCTCCTTAGAAATGTA s nomLeu3.chr20 82305365 37 - 85365473 ACTCTTTGAACACCTTGCAAATCTCCTTAGAAATGTA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11919010 37 + 106825570 AATCTTCAAACACCTTGCAAATCTCCTTAGAAATGTA i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37623346 37 + 132586672 AATCTTCAAACACCTTGCAAATCTCCTTAGAAATGTA i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11280540 37 + 104110932 AATCTTCAAACACCTTGCAAATCTCCTTAGAAATGTA i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34377632 37 + 128595539 AATCTTCAAACACCTTGCAAATCTCCTTAGAAATGTA i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87863116 37 - 158406734 CCTCTTTGAACACCTTGCAAGTCTCCTTAGAAATGTA i calJac3.chr6 C 0 C 0 s canFam3.chr19 50624491 37 + 53741614 CCTCTTCATTCACCTTGTAGAGCTACTCAGAAATATA i canFam3.chr19 C 0 C 0 e panTro4.chr2B 153150686 54 + 247518478 I e ponAbe2.chr2b 38354446 2961 + 135000294 M e mm10.chr2 49712798 12 + 182113224 I a score=8703.000000 s hg38.chr2_GL582966v2_alt 36029 5 + 96131 CTGTT s nomLeu3.chr20 82305402 5 - 85365473 CTGTT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11919047 5 + 106825570 CTGTT i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37623383 5 + 132586672 CTGTT i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11280577 5 + 104110932 CTGTT i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34377669 5 + 128595539 CTGTT i chlSab2.chr10 C 0 C 0 s canFam3.chr19 50624528 5 + 53741614 CGGTT i canFam3.chr19 C 0 C 0 e panTro4.chr2B 153150686 54 + 247518478 I e ponAbe2.chr2b 38354446 2961 + 135000294 M e calJac3.chr6 87863153 0 - 158406734 C e mm10.chr2 49712798 12 + 182113224 I a score=339172.000000 s hg38.chr2_GL582966v2_alt 36034 285 + 96131 TTCtcccagctctttgggtggccgaggtgggcagatcacctgaggtcgggagttcgagacccgcctggccaacatggagaaaccctgtctctact-aaaaatacaaaattagctaggtgtgg-tggcgcatgcctgtaatcccagctactcagtaggctgaggcaggagaatcgcttgaaccctggaggcggaggttgcagtgagccgagaacccaccattgtactccagcctgggcaaaaagagcaaaactccatctcaaaaaaaaaaaaa--------------------agagaaagaaaTGTG s nomLeu3.chr20 82305407 305 - 85365473 TTCtcccagctctttgggaggccgaggtgggcagatcacctgaggtcgggagttcgagacccgcctggccaacatggagaaaccctgtctctactaaaaaatacaaaa-tagccaggcgtggatggcgcat-tttgtaatcccagctactcagtaggctgaggcaggagaatcacttgaaccccagaggcagaggttgtggtgagccgagatcccaccattgtactccagcctgggcaaaaagagcaaaactccatctcaaaaaaaaaacaaaaaaaaacaaaaaaaaacCGAAAGAAAGAAATGTG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11919052 278 + 106825570 TTCtcccagctctttgggaggccaaggcgggcagatcaacg-aggtcgggagtttgagaccaacctggccaacatggagaaaccctgtctctactaaaaaatacaaaattagccaggcatgg-tggcagatgcctgtaatcccagctacttgggaggctgaggcaggaaaatcgcttgaaccccaaaggcggaggttgcagtgagccgagatcatgccattgtactccagcctgggcaaaaagagcaaaactccatctc---aaaagaaaaa------------------------aaagaaaTGTG i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37623388 278 + 132586672 TTCtcccagctctttgggaggccaaggcgggcagatcaact-aggtcgggagtttgagaccaacctggccaacatggagaaaccctgtctctactaaaaaatacaaaattagccaggcatgg-tggcagatgcctgtaatcccagctacttgggaggctgaggcaggaaaatcgcttgaaccccaaaggcggaggttgcagtgagccgagatcatgccattgtactccagcctgggcaaaaagagcaaaactccatctc---aaaagaaaaa------------------------aaagaaaTGTG i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11280582 279 + 104110932 Ttctcccagctctttgggaggccgaggcgggcagatcaact-aggtcgggagtttgagaccaacctggccaacatggagaaaccctgtctctactaaaaaatacaaaattagccaggcatgg-tggcggatgcctgtaatcccagctacttgggaggctgaggcaggaaaatcgcttgaaccccaaaggcggaggttgcagtgagccgagatcatgccattgtactccagcctgggcaaaaagagcaaaactccatctc--aaaaaaaaaaa------------------------aaagaaatgtg i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34377674 281 + 128595539 TTCtcccagctctttgggaggacgaggcaggcagatcaact-aggtcgggagtttgagaccaacctggccaacatggagaaaccctgtctctactaaaaaatacaaaattagccaggcatgg-tggcagatgcctgtaatcccagctacttgggaggctgaggcaggaaaatcgcttgaaccccaaaggcggaggttgcggtgagccgagatcatgccattgtactccagcctgggcaaaaagagcaaaactccatctcaaaaaaaaaaaaa------------------------aaagaaaTGTG i chlSab2.chr10 C 0 C 0 e canFam3.chr19 50624533 0 + 53741614 C e panTro4.chr2B 153150686 54 + 247518478 I e ponAbe2.chr2b 38354446 2961 + 135000294 M e calJac3.chr6 87863153 0 - 158406734 C e mm10.chr2 49712798 12 + 182113224 I a score=2100.000000 s hg38.chr2_GL582966v2_alt 36319 1 + 96131 C s nomLeu3.chr20 82305712 1 - 85365473 C i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11919330 1 + 106825570 C i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37623666 1 + 132586672 C i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11280861 1 + 104110932 c i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34377955 1 + 128595539 C i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87863153 1 - 158406734 C i calJac3.chr6 C 0 C 0 e canFam3.chr19 50624533 0 + 53741614 C e panTro4.chr2B 153150686 54 + 247518478 I e ponAbe2.chr2b 38354446 2961 + 135000294 M e mm10.chr2 49712798 12 + 182113224 I a score=8946.000000 s hg38.chr2_GL582966v2_alt 36320 4 + 96131 TGTT s nomLeu3.chr20 82305713 4 - 85365473 TGTT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11919331 4 + 106825570 TGTT i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37623667 4 + 132586672 TGTT i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11280862 4 + 104110932 tgtT i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34377956 4 + 128595539 TGTT i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87863154 4 - 158406734 TGTT i calJac3.chr6 C 0 C 0 s mm10.chr2 49712810 4 + 182113224 TGAT i mm10.chr2 I 12 C 0 e canFam3.chr19 50624533 0 + 53741614 C e panTro4.chr2B 153150686 54 + 247518478 I e ponAbe2.chr2b 38354446 2961 + 135000294 M a score=2321544.000000 s hg38.chr2_GL582966v2_alt 36324 1149 + 96131 TTCTGTGCCCTCTTGGGTGAGATCCTACATGAGCCTTTAAGTTACATAATTTGGGGAAAATAATGTATGATGATATACTCTGGCACAGAG------TAG-ACCTCCAATAAATGTATGGGAAGCAAACATATGCTTAATGCAGGTGCTGGAGATTAAAGGGTGGGCAGTCAGATGTGGTCTCTTCCC-TCAGGACGGTC-TGAGCGGGGAGGAAGGTAAATGCCAGTCCTCACCAATAAATGTATGATGGTAGTCCACGCTGCATACCAAGAAGTGAAAGCAC-AGGTGCCAAGAG-TTATACAACAGGGGGCCCTGACCTTGACTGAGAAGCCAGTGAAG---GGTTCCTTGAATATGCAATGTAGAGATTAGTATCTGTGAGAAGC-GCAGTTAGCCAGGCAAAATAG--GGGGCATGAGGTGAG------------GTGGGGG-------------------CT------CCGAGAATGGA--GGACATAGGCCAGC---------------AGGGAGCACTGGCCTGAGATG-----GGCTCGAGGGATAGGCGGGGCTCTCC-TGT-------------------CTTCAGGATTTTGG------TCAAGGGTGTTAAGCTGCAAGTCATAC------CTTCGCA------TTTTTGAAGATCCATTGgct-------gtattggagagtggactgcaggtcggagaggagggctgggagc---tggggtggtcttccagggatgagatgacggta-----ttgaagtgac----agggtagtaggaagggagagaaatggatgaacctgagagatatttaggaggagaaattagccgggtgtggtgaggggttggctatg-ggagagggaggtttcaatgacaactgt--gttttctggctt-gccgagttggatggagggtgagaccattctctaagactggggatgctggaggagaacca---------ggggtg------agg-gaggagggagttt-ag-ggtccccgtggaacatccaggggaacattattcagataagaagttaggtctgagggtct--gg----agctcagaggatctgcttgagttggagtca----------tcagtcttttggtagtaattgaaggcataggtaggtgtgagggccctt---tggactacagagaaagaagagaagaCAGAG---AGAGTCTGAGAGGCCCCCA-GCAAC--CCCATTGCCACGTCACCACTG-GTTGTGATGGGAGAAG-GGAATTGGAGGGATTCCGCAGAACTCTCCTTTcctccccagctaacatttgta-t-ttaaaggtga s nomLeu3.chr20 82305717 1149 - 85365473 TTCTGTGCCCTCTTGGGTGAGATCCTACGTGAGCCCTTAAGTTACATAATTTGGGAAAAATAATGTATGATGATATACTCTGGCACAGAG------TAG-ACCTCCAATAAATGTATGGGAAGCAAACACATGCTTAACGCAGGTGCTGGAGATTAAAGGGTGGGCAGTCAGATGTGGTCTCTGCCC-TCAGGACGGTC-TGAGCGGGGAGGAAGGTAAATGCCAGTCCTCACCAATAAATGTATGATGGTAGTCCACGCTGCATACCAAGAAGGGAAAGCAC-AGGTGCCAAGAA-TTACACAACAGGGGGCCCTGACCTTGACTGAGAAGCCAGTGAAG---GGTTCTTTGAATATGCAATATAGAGATTAGTATCTGCGAGAAGCAGCAGTTAGCCGGGCAAAATAG--GGGGCACGAGGTGAG------------GTGGGGG-------------------CT------CCGAGAATGGA--GGACATAGGCCAGC---------------AGGGAGCACCGGCCTGCGATG-----GGCTCGAGGGATAGGCGGGGCTCTCC-CGT-------------------GTTCAGGATTTTGA------TCAAGGGTGTTAAGCTGCAGGTCATAC------CTTCGCA------TTTTTGAAGATCCATCAgct-------gtattggagagtggactgtaggttggagaggagggctgggagc---tggggtggtcttccagggatgagatgatggta-----ttgaagtgag----agggcagtaggaagggagagaaatggatgaacctgagagatatttaggaggagaaattagctgggtgtggtgaggagctggctatg-ggagagggaggtttcaatgacaactgtgagttttctggctt-gccgagttggatggagggtgagaccattccctaagactggggatgctggaggagaacca---------ggggtg------agg-gaggagggagttt-ag-ggtcccggtggaacatccaggggaacattattcagataagaaattaggtccgagggtct--gg----agctcagaggatctgcttgagttggagtca----------tcaatctTTCGGTAGTAACTGAAGGCATAGGTAGGTGTGAGGGCCCTT---TGGACTAC----AAAGAAGAGAAGACAGAG---AGAGTCTGAGAGGCCCCCATGCAAC--CCCATTGCCACGTCACCACTG-GTTGTGATGGGAGAAG-GGAATTGGAGGGATTCCGCAGAGCTCTCCTTTCCTCCCCAGCTAACATTTGTA-T-TTAAAGGTGA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11919335 1155 + 106825570 TTTGGTGCCCTCTTGGATGAGATCCTACACGAGCCCTTAAGTTACATAATTTGGGAAAAATAATGTATGATGATATACTCTGGCACAGAG------TAG-ACCTCCAGTAAATGTATGTGAAGCAAACATATGCTTAATGCAGGTGCTGGAGATTAAAGGGTGGGCAGTCAGATGTGGTCTCTGCCC-TCAGGACGGTC-TGAGCTGGGAGGGAGGTAAATGCCAGTCCTCACCAATAAATGTATGATGGTCGTCCATGCTGCATACCAAGAACGGAAAGCAC-AGGTGTCAAGAG-TTATACAACAGGGCGCCCTGACCTTGACTGAGAAGCCAGTGAAGAACGGTTCCTTGAGTATGCAATATGGAGATTAGTATCTGAGAGAAGCAGCAGTTAGCCGGGCAAAATAG--GGGACATGAGGTGAG------------GTGGGGG-------------------CT------CCGAGAATGGA--GGACATAGGCCAGC---------------AGGGAGCAGTGGCCTGAGATG-----GGCTGGAGGAATAGGCGGAGCTCTCC-CGT-------------------GTTCAGGATTTTGG------TCAAGGGTGTTAAGCTGCAGGTCATAC------CTTCGAA------TTTTTGAAGATCCATCGgct-------gtattggagagtggactgcaggtcagagaggagagctgggagc---tggggtggtcttccagggatgaggtgatggta-----ttgaagtgag----agggcagtaggaagggagagaaatggatgaacctgggaggtatttaggaggagaaattagctgggtgtggtgaggagttggctatg-ggagagggacgtttcaataacagcggtgagttttccggctt-gccgagttggatggagggtgagaccattccctaagactggggatgctggaggagaacca---------ggggtg------agg-gaggagcgagttt-tg-ggttcccgtgaaacattcaggggaacattattcagataagaagttaggtctgagggtct--gg----agctcagaggatctgcttgagttggagtca----------tcaatcttttggtagtaattgaaggcataggtaggcgtgagggccctt---tggactacagagaaagaagagaagaCAGAG---AGAGTCTGAGAGGCTCCCA-ACACC--CCCATTGCCACGTCATCAATG-GTTGTGATGGGAGAAG-GGAATTGGAGGGATTCCACAGAGCTCTCCTTTCCTCCCCAGCTAACATTTGTA-T-TTAAAGGTGA i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37623671 1155 + 132586672 TTTGGTGCCCTCTTGGATGAGATCCTACACGAGCCCTTAAGTTACATAATTTGGGAAAAATAATGTATGATGATATACTCTGGCACAGAG------TAG-ACCTCCAATAAATGTATGTGAAGCAAACATATGCTTAATGCAGGTGCTGGAGATTAAAGGGTGGGCAGTCAGATGTGGTCTCTGCCC-TCAGGACGGTC-TGAGCTGGGAGGGAGGTAAATGCCAGTCCTCACCAATAAATGTATGATGGTCGTCCATGCTGCATACCAAGAACGGAAAGCAC-AGGTGTCAAGAG-TTATACAACAGGGCGCCCTGACCTTGACTGAGAAGCCAGTGAAGAACGGTTCCTTGAGTATGCAATATGGAGATTAGTATCTGAGAGAAGCAGCAGTTAGCCGGGCAAAATAG--GGGACATGAGGTGAG------------GTGGGGG-------------------CT------CCGAGAATGGA--GGACATAGGCCAGC---------------GGGGAGCAGTGGCCTGAGATG-----GGCTGGAGGAATAGGCGGAGCTCTCC-CGT-------------------GTTCAGGATTTTGG------TCAAGGGTGTTAAGCTGCAGGTCATAC------CTTCGAA------TTTTTGAAGATCCATCGGCT-------GTATTGGAGAGTGGACTGCAGGTCAGAGAGGAGGGCTGGGAGC---TGGGGTGGTCTTCCAGGGATGAGGTGATGGTA-----TTGAAGTGAG----AGGGCAGTAGGAAGGGAGAGAAATGGATGAACCTGGGAGGTATTTAGGAGGAGAAATTAGCTGGGTGTGGTGAGGAGTTGGCTATG-GGAGAGGGACGTTTCAATAACAGCGGTGAGTTTTCCGGCTT-GCCGAGTTGGATGGAGGGTGAGACCATTCCCTAAGACTGGGGATGCTGGAGGAGAACCA---------GGGGTG------AGG-GAGGAGCGAGTTT-TG-GGTTCCCGTGAAACATTGAGGGGAACATTATTCAGATAAGAAGTTAGGTCTGAGGGTCT--GG----AGCTCAGAGGATCTGCTTGAGTTGGAGTCA----------TCAATCTTTTGGTAGTAATTGAAGGCATAGGTAGGCGTGAGGGCCCTT---TGGACTACagagaaagaagagaagacagag---agagtctgagagGCTCCCA-ACACC--CCCATTGCCACGTCACCACTG-GTTGTGATGGGAGAAG-GGAATTGGAGGGATTCCACAGAGCTCTCCTTTcctccccagctaacatttgta-t-ttaaaggtga i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11280866 1155 + 104110932 TTCGGTGCCCTCTTGGATGAGATCCTTCACGAGCCCTTAAGTTACataatttgggaaaaataatgtATGATGATATACTCTGGCACAGAG------TAG-ACCTCCAATAAATGTATGTGAAGCAAACATATGCTTAATGCAGGTGCTGGAGATTAAAGGGTGGGCAGTCAGATGTGGTCTCTGCCC-TCAGGACGGTC-TGAGCTGGGAGGGAGGTAAATGCTAGTCCTCACCAATAAATGTATGATGGTCGTCCATGCTGCATACTAAGAACGGAAAGCAC-AGGTGTCAAGAG-TTATACAACAGGGCGCCCTGACCTTGACTGAGAAGCCAGTGAAGAACGGTTCCTTGAGTATGCAATATGGAGATTAGTATCTGAGAGAAGCAGCAGTTAGCCGGGCAAAATAG--GGGACATGAGGTGAG------------GTGGGGG-------------------CT------CCGAGAATGGA--GGACATAGGCCAGC---------------GGGGAGCACTGGCCTGAGATG-----GGCTGGAGGAATAGGCGGAGCTCTCC-CGT-------------------GTTCAGGATTTTGG------TCAAGGGTGTTAAGCTGCAGGTCATAC------CTTCGAA------TTTTTGAAGATCCATCGGCT-------GTATTGGAGAGTGGACTGCAGGTCAGAGAGgagggctgggagc---tggggtggTCTTCCAGGGATGAGGTGATGGTA-----TTGAAGTGAG----AGGGCAGTAGGAAGGGAGAGAAATGGATGAACCTGGGAGGTATTTAGGAGgagaaattagctggatgtggtgaggAGTTGGCTATG-GGAGAGGGACGTTTCAATAACAGTGGTGAGTTTTCCGGCTT-ACCGAGTTGGATGGAGGGTGAGACCATTCCCTAAGACTGGGGATGCTGGAGGAGAACCA---------GGGGTG------AGG-GAGAAGCAAGTTT-TG-GGTTCCCGTGAAACATTCAGGGGAACATTATTCAGATAAGAAGTTAGGTCTGAGGGTCT--GG----AGCTCAGAGGATCTGCTTGAGTTGGAGTCA----------TCAATCTTTTGGTAGTAATTGAAGGCATAGGTAGGCGTGAGGGCCCTT---TGGActacagagaaagaagagaagacagag---agagtctgagagGCTCCCA-ACACC--CCCATTGCCACGTCACCACTG-GTTGTGATGGGAGAAG-GGAATTGGAGGGATTCCACAGAGctctcctttcctccccagcTAACATTTGTA-T-TTAAAGGTGA i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34377960 1155 + 128595539 TTCGGTGCCCTCTTGGATGAGATCCTACACGAGCCCTTAAGTTACATAATTTGGGAAAAATAATGTATGATGATATACTCTGGCACAGAG------TAG-ACCTCCAATAAATGTATGTGAAGCAAACATATGCTTAATGCAGGTGCTGGAGATTAAAGGGTGGGCAGTCAGATGTGGTCTCTGCCC-TCAGGACGGTC-TGAGCTGGGAAGGAGGTAAATGCCAGTCCTTACCAATAAATGTATGATGGTCATCCATGCTGCATACAAAGAACGGAAAGCAC-AGGTGTCAAGAG-TTATACAACAGGGCGCCCTGACCTTGACTGAGAAGCCAGTGAAGAACAGTTCCTTGAGTATGCAATATGGAGATTAGTATCTGAGAGAAGCAGCAGTTAGCCGGGCAAAATAG--GGGACATGAGGTGAG------------GTGGGGG-------------------CT------CCGAGAATGGA--GGACAGAGGCCAGC---------------GGGGAGCACTGGCCTGAGATG-----GGCTGGAGGAATAGGCGGAGCTCTCC-CGT-------------------GTTCAGGATTTTGG------TCAAGGGTGTTAAGCTGCAGGTCATAC------CTTCGAA------TTTTTGAAGATCCATCGGCT-------GTATTGGAGAGTGGACTGCAGGTCAGAGAGGAGGGCTGGGAGC---TGGGGTGGTCTTCCAGGGATGAGGTGATGGTA-----TTGAAGTGAG----AGGGCAGTAGGAAGGGAGAGAAATGGATGAACCTGGGAGGTATTTAGGAGGAGAAATTAGCTGGGTGTGGTGAGGAGTTGGCTATG-GGAGAGGGACGTTTCAATAACAGCTGTGAGTTTTCTGGCTT-GCCAAGTTGGATGGAGGGCGAGACCATTCCCTAAGACTGgggatgctggaggagaacca---------ggggtg------agg-gaggagggagTTT-TG-GGTTCCCGTGAAACATTCAGGGGAACATTATTCAGATAAGAAGTTAGGTCTGAGGGTCT--GG----AGCTCAGAGGATCTGCTTGAGTTGCAGTCA----------TCAATCTTTTGGTAGTAATTGAAGGCATAGGTAGGCGTGAGGGCCCTT---TGGACTACagagaaagaagagaagatagag---agagtctgagagGCTCCCA-ACACC--CCCATTGCCACGTCACCACTG-GTTGTGATGGGAGAAG-GGAATTGGAGGGATTCCACAGAGCTCTCCTTTTctccccagctaacatttgta-t-ttaaaggtga i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87863158 1174 - 158406734 TTCTGTGCCCTATTGGGTGAGATCCTACATGAACCCTTAAGTTACGTAATTTGAGAAAACTAATGGATGATAATGTACTCTAGCACAGAGGTACTCTAGTACCTCCAATAAATGTATGTGGAGCAAACATATGCTTAATGCAggtgctggagattaaagggtgggcagtcagatgtggtctctgcccttcaggacggtc-tgagcagggagggaggtaaatgccagtcctcaccaataagcgtatgatgatagtccatgctgcataccaagaaggggaagcac-aagtgccaagag-ttacgcaacagcgggccctgaccttgactgagaagccagtgagg----gttccttgaatatgcaacatagagatgagtatctgagagaagcagcagttagccgggcaaaATAG--GAGGCATGAGGTGGT------------GTGTGGG-------------------CT------CTGAGAGTGGA--GGACACAGGCCAGC---------------CGGGAGCACCGGCCTGAGATG-----GGCTGGAGGAATGGGCGGGGCTCTCC-CATGTAGGTCTACACAGTCCTCGTTCAGGATTTTGG------TCAAGGGTGTTAAGCTG---GTCATAC------ATTTGCA------TTTTTGAAGATCCATTGGCT-------GCACTGGAGAGTGGACTGCAAGTCGGAGAGGAGAACTGGGAACTAGTGGGGGGGTCTTCCAGGGATGAGATTATAGCA-----TTGAAGTAAGAGACAGGGCAGTAGGAAGGGAGAGAAATGGATGAACCTGAGCGGTATTAAGTAGGAGAAATTAGCTG-----GGTGAGGAGTTGGCTATG-CGAGAGGGAGGTTTCAGTGACAGCTGTGAGTTTTCC-TCTT-GCCGAGTTGGATGGAGGGTGAGACCATTCCTTCAGAATGGGGATGCTGGAGGAGAACCAGACTG----GGGGTG------AGG-GAGGAGGGAGTTTGGG-GGTCCCTGTGGAACATCCAGGGAAACATTATTCAGATAAGAAATTAGGACAGAGAGTCT--GG----AACTCAGAGGATTTGCTTGAGTTGGAGTCA----------TCGATCCTTAGGTAATCATTGAAGGCATAGGTAGGCATGAGCACCCTT---TGGACTAC----AAAGAAGAGAAGAC-------AGAGTCTGAGAGACTCCCA-GGACC--TCCATTGCCACGTCAACACTG-GTTGTGATGGGAGAAG-GAGATTGGAGGGATTCTGCACAGCTCTTCTTTCCTCACCAGCTAATATTTGTC-T-TTCAAGGTGA i calJac3.chr6 C 0 I 282 s mm10.chr2 49712814 1122 + 182113224 TTATGAGTCTTTT--GGTGGAATTCTACATAAATCTTTAAGCTACATAATTTGGGGAAAGTAAGGCATAGT------TTCTGGTATATCA------CAG-ACCTACAATAAATGCATATTACACAATTGTGCGCCTAACATGGAATC--------------TGGGCATCCGGGTGAGACCTGTGCTT-TGAATGT----------------AAAGGGAACTTTCAGTCACTGTCAATACATGTATGGTAATAGTCTATGCTGCACACCAAGAAAACAAAGTGT---GTGTCCAGAGATTTTATAGCAGGCAG---TTAACCTCTTTGAGAAGCCACCGAGG---GCTTCCTTGAATAAACAATATAGAGAATTG-ACTGGAGAGA----TCAGTTAGCTGGGTGAAACAG--GAGATTTAAGGTGAGCTCCAGCTTCCTGTGGGGGGAACTGAATTGA-------CTGGGGAACTGAGGGTGAG--AGCGGAAGACCAGTGTAGGGTGTGGGCTGGGGAAGCAGTGGTCTTGGGTGAACTTGGCAGGTAGTATAGGAATTGTTCTTCAAGT-------------------AATGAG-----------------AAGCCACTCAGCTATAGA--ACAC------TTCAGAAGAGTGGCGTTTTAAGGTCTCTTAGTT-------GTGCTGGAGAAAGGACTG-----------GGGTAGGCAGAAGA---AGGTGTGGT-----AGAGGCAGGGAGAAGGCA----GTTAAACTGAA----A----AATAGGA---GGTAGAATGGAATGAATTGGATTGGCATT--GAAACAGAAATTTGCAGGGTTTGGTGAGGA-CTAACCATGCAGGGAAGGCGGTGTCAA-GGTGGTTCTGAGGCTTTTGTCTTGGCTAAGTTGGCTCATAGACAGAACTGTTCCCTTAGACTAGAAATACAGGAACAGAGCCGGCCT-----GGGGAGCAGAGCAGG-AAAGAGAAAGCCT-GG-GGTGACCAGAAAGCATCCACAGGAGGGTCCTGC----GAGAAGGTTGTTCTGGGGCTCTTCAG----AACTGCAAGAGGGAACTTGAGT----ATTA----------CTGATCTTTC--CTGTGGTTGAAGGCATAGGTAGAGGCAAGGCTCCTA---TAGGTGATAGAGTGGAGAGGGAAGAGAGGAAGTAGAGGTTGACAGACTCCTC-CCAACAGCCTGTGGCCTTGTAACCTCT------------GAGCAGCTGGATGGGAGGTGTTCTGCAGAGAAC--CTTGCCTTCCCTGCTAGTATTTGTGTT-TTAAAGGTGA i mm10.chr2 C 0 I 2 s canFam3.chr19 50624533 1142 + 53741614 TTCCATGTCCTACGGGGTGAGAGCCTACATAAGCCCTT-ATTTACAGAATTTGGGAAAACTCATGTATGGT------TTCTGGCATGTGA------TAG-ACTTTCA-------TAGATTACGTAAACGTGCCTTTAATCCAT-Tgctggagaggaaagggtgagccgtcagtcatggtctctgcac-ttacggagcttatggtcctgctgagggagagactccag----------------------------------------ccaaaaagggaaaggataagggactaaaag-ttatt--acaatgggccctgactt----tgagaagccagtgaag---gcttcccccagtatgcaacctagggaatagcatctaagagaa---gcagttag--gagcagcaaggtcgaagtgggagttgag-----------ggtagagggacctgcactgacaacatccc------ccggggacagcctggatgtggg--agc--------tggggtggggcagtcgtggcctgagatg-----ggtgggaggggT---TCAGGATTTCA-TCT-------------------GGGAAGCAGtgagaagcccttcagggatattaaactgaaggtcatatgataaggtttgca------gctttgaagatctgttggttgttggtcgtattggagaacggactggagag-ggggaggagggccaggaac---aaggatggtcttccagggatgaggttgcagtagttgggtggagagac----cgggcaatggaaagggagagacctgggcggaccagagaggtatgcaggaggtgagatcagcaggccttgctgaggagctggccctg-gg-gagaga-gtgccaa------------cttggctggctt-gccgagatggatggagggtgggaccatttactgaaacaagaaacaccagaggagaaccagactgaagacagatg------aggtgaggagggggctt-tgcggtgcccctcgaacatccaggtgaagtgc---caaatgaggaattaggtccaagggtgc--agcgctcgctcggaggcactggctgagctggaggaagaaagacaacttgaacttgaggaagtccatgaaggcatgggtaggggtgagcttccctatagagagggcgggcagggaagaggagaggGAG---AGGGTCTTGAGAGCGACCC-CCTCG--GCCATTACCCCGTAATCCCTGAGTGGGGGTGATAGAGG---------AGGGGATCTGTGGAGCCCTCCTGGCCTCCCAAGGTGACATCTGTG-TCTTAAAGACAA i canFam3.chr19 C 0 C 0 e panTro4.chr2B 153150686 54 + 247518478 I e ponAbe2.chr2b 38354446 2961 + 135000294 M a score=3150.000000 s hg38.chr2_GL582966v2_alt 37473 3 + 96131 ttt s nomLeu3.chr20 82306866 3 - 85365473 TTT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11920490 3 + 106825570 TTT i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37624826 3 + 132586672 ttt i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11282021 3 + 104110932 TTT i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34379115 3 + 128595539 ttt i chlSab2.chr10 C 0 C 0 s mm10.chr2 49713938 1 + 182113224 T-- i mm10.chr2 I 2 C 0 s canFam3.chr19 50625675 3 + 53741614 TTT i canFam3.chr19 C 0 C 0 e panTro4.chr2B 153150686 54 + 247518478 I e ponAbe2.chr2b 38354446 2961 + 135000294 M e calJac3.chr6 87864332 282 - 158406734 I a score=12344.000000 s hg38.chr2_GL582966v2_alt 37476 7 + 96131 --ttctagg- s nomLeu3.chr20 82306869 7 - 85365473 --TTCTGGG- i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11920493 7 + 106825570 --TTCTGGG- i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37624829 7 + 132586672 --ttctggg- i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11282024 7 + 104110932 --TTCTGGG- i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34379118 7 + 128595539 --ttctgga- i chlSab2.chr10 C 0 I 141 s calJac3.chr6 87864614 7 - 158406734 --TTCTGGG- i calJac3.chr6 I 282 C 0 s mm10.chr2 49713939 7 + 182113224 --TACTGGA- i mm10.chr2 C 0 C 0 s canFam3.chr19 50625678 10 + 53741614 TTTTCCAAAA i canFam3.chr19 C 0 C 0 e panTro4.chr2B 153150686 54 + 247518478 I e ponAbe2.chr2b 38354446 2961 + 135000294 M a score=179464.000000 s hg38.chr2_GL582966v2_alt 37483 83 + 96131 ggcaa-agttcttaaaggtagagaactgactttagtgatgtaagtttcaggCGAGAAGGAGAGTAGTGAGGGGCAGTGAGGAGG s nomLeu3.chr20 82306876 83 - 85365473 GGCAA-AGTTCTTACATGTAGAGAACTAACTTTAGTGGTGTAAGTTTCAAGCAAGAAGGAGAGTAGTGAGGGGCAGTGAGGAGG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11920500 83 + 106825570 GGCAA-AATTCTTAAATGTAGAGAACTGACTCTAGTGATGTAAGTTTCAGGCGAGAAGGAGAGTAGTGAGGGGCAGTGAGGAGG i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37624836 83 + 132586672 ggcaa-aattcttaaatgtagagaactgactctagtgatgtaagtttcaggCGAGAAGGAGAGTAGTGAGGGGCAGTGAGGAGG i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11282031 83 + 104110932 GGCAA-AGTTCTTAAATGTAGAGAACTGACTCTAGTGATGTAAGTTTCGGGGGAGAAGGAGAGTAGTGAGGGGCAgtgaggagg i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34379266 83 + 128595539 GGCAA-AGTTCTTAAATGTAGAGAACTGACTCTAGTGATGTAAGTTTCAGGCGAGAAGGAGAGTAGTGAGGGGCAGTGAGGAGG i chlSab2.chr10 I 141 C 0 s calJac3.chr6 87864621 83 - 158406734 GGCAA-AGTTCTTAAATGTAGAGAACTGACTCTAGTGATGTAAGTTTCAGGTGAGAAGGAGAGTAGTAAGGGGCAGTGAGGAGG i calJac3.chr6 C 0 C 0 s mm10.chr2 49713946 83 + 182113224 GGCAATGGTTTGTAAGTGCAGAGAACATGGACTGATGGGAGAGACTACGGGTGATCA-GAGAGCAGTGAGGGAGAGTGAGGAGG i mm10.chr2 C 0 I 70 s canFam3.chr19 50625688 81 + 53741614 GCAAA-AGTTTGCAAATGTAGAGAAGGAGCGTCGGTGATACAGATTTGGGGCTGGAAGTGCGGCAGGTAGAGATAGAGCATC-- i canFam3.chr19 C 0 C 0 e panTro4.chr2B 153150686 54 + 247518478 I e ponAbe2.chr2b 38354446 2961 + 135000294 M a score=590808.000000 s hg38.chr2_GL582966v2_alt 37566 403 + 96131 TGGGGAGAGGTCCTTTGTCCCATGGAGGGGGCAGAGCTACCTCAAACAGTAACTCTGCGTCTCATGCTATGTGCCAGTGGACGTTACAGGGACAACAGACCAGGCCAGGCTTTTTGTTACATTCTGAGGCTGGGCATTTAATCCTCAAGTAGCTCTTGTGACCATGAATGACAGGTCTGAAAACGTCCCCAAGTGGATCAGTCTCtggtaaagctgcgatctgaactgagtg----ggcctgactctaaagttcattctctttctactgTCTGCACAGCCTGCTCATCAAGTTAGCAGAATGATTTGTGGGCAGGG------CCAGTTAGATGAGTGTAATAAATATCACGCC-----AAAAAAAGGGGCACTGGAAGCCCTTCCATGGTCTCCCCACGTGTCAGTCCTAATTCTTCA s nomLeu3.chr20 82306959 403 - 85365473 CGGGGAGAGGTCCTTTCTCCCATGGAGGGGGCAGAGCTACCTCAAACAGTAACTCTGCATCTCATGCTGTGTGCCAGTGGACGTTACAGGGACAGGAGACCAGGCCAGGCTTTTTACTACATTCTGAGGCTGGGCATTTAATCCTCAAGTAGCCCTTGTGACCATGAATGACAGGCCCGAAAACGTCCCCAAGTGGATCAGTCTCtggtaaagctgcgatctgaactgagtg----ggcctgactgtaaagttccttctctttctattgtctgcacagcctgctcatcAAGCTAGCAGAATGATTTGTGTGCAGGG------CCAGTTAGATGAGTGTAATAGATATCACGCC-----AAAAAAAGGGGCACTGGAAGCCCTTCCATGGTGTCCCCACGTGTCAGTTCTAATTCTTCA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11920583 360 + 106825570 TGGGGAGAGGTCCTTTGTCCCATGGAGGGGGCAGATCTACCTCAAAGAGTAACTCTG-----------------------------------CAACAGACCAGGCCAGGCTTTTCGTTATGTTCTGAGTCTGGGCATTTAGTCCTCAAGTAGCCAATATGACCATGAATGACAGGCCCAAAAATGTCCCCAAGTGGATCAGTCTCtggtaaagctgcgatctgaacagagtg----ggcctgactctaaagttcattctctttctattgtctgcacagcctgctcatcAAGC--------TGATTTGTGTGCAGGG------CCAAGTAGATGGGTGTAATAAATATCATGCC-AAAAAAAAAGGGGGGCACTGGAAGCCCTTCCATAGTGTCCCCACATGTC----CTAATTCTTCA i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37624919 360 + 132586672 TGGGGAGAGGTCCTTTGTCCCATGGAGGGGGCAGATCTACCTCAAAGAGTAACTCTG-----------------------------------CAACAGACCAGGCCAGGCTTTTTGTTATGTTCTGAGTCTGGGCATTTAGTCCTCAAGTAGCCAATATGACCATGAATGACAGGCCCAAAAATGTCCCCAAGTGGATCAGTCTCtggtaaagctgcgatctgaacagagtg----ggcctgactctaaagttcattctctttctattgtctgcacagcctgctcatcAAGC--------TGATTTGTGTGCAGGG------CCAAGTAGATGGGTGTAATAAATATCATGCC-AAAAATAAAAGGGGGCACTGGAAGCCCTTCCATAGTGTCCCCACATGTC----CTAATTCTTCA i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11282114 361 + 104110932 tggggagaggtcTTTTGTCCCATGGAGGGGGCAGATCTACCTCAAAGAGTAACTCTG-----------------------------------CAACAGACCAGGCCAGGCTTTTTGTTATGTTCTGAGTCTGGGCATTTAGTCCTCAAGTAGCCAATATGACCATGAATGACAGGCCCAAAAATGTCCCCAAGTGGATCAGTCTCTGGTAAAGCTGTGATCTGAACAGAGTG----GGCCTGACTCTAAAGTTTATTCTCTTTCTGTTGTCTGCACAGCCTGCTCATCAAGC--------TGATTTGTGTGCAGGG------CCAAGTAGATGGGTGTAATAAAtatcatgccaaaaaaaaaaagggggcacTGGAAGCCCTTCCATAGTGTCCCCACATGTC----CTAATTCTTCA i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34379349 359 + 128595539 TGGGGAGAGGTCCTTTGTCCCATGGAGGGGGCAGATCTACCTCAAAGAGTAACTCTG-----------------------------------CAACAGACCAGGCCAGGCTTTTTGTTATGTTCTGAGTCTGGGCATTTAGCCCTCAAGTAGCCAATATGACCATGAATGACAGGCCCAAAAATGTCCCCAAGTGGATCAGTCTCTGGTAAAGTTGCGATCTGAACAGAGTG----GGCCTGACTCTAAAGTTCATTCTCTTTCTATTGTCTGCACAGCCTGCTCATCAAGC--------TGATTTGTGTGCAGGG------CCAAGTAGATGGGTGTAATAAATATCATGCC--AAAAAAAAAGGGGGCACTGGAAGCCCTTCCATAGTGTCCCCACATGTC----CTAATTCTTCA i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87864704 402 - 158406734 CGGGGAGAAGTCCTCTGTCCCGTGAAGAGTGCAGAGCTACCTCAAGGAGTAACTCTGCATCTCATGCATTGTGCCAGTGGGCGTCACAGGGACAACAGACTGGGCCAGGCTTCTTGTTACATTCCGGGGCTGGGCATTTAATCCTCAGGTAGCCC-TGTGACCATGAGTGACAGGCCAGAAAATGTCCCAAAGTAGATCAGTCTCTGGTAAAGCTATGATCTGACCTGAGTG----GGCCTGGCTCTTAAGTTCATTCTCTTTGTCTTGTCTGTACAACCTGCTCACAGAGCTAGCAGAGTGATTTGTGTGCAGGG------CCAGTTAGATGAGTGTAATACATATCACACC-----AGAAAAGGGGGCACTGGAAGCCCTTCCATGGTGTCCCCAGGTGTCAGTCCTAAGTCTTTA i calJac3.chr6 C 0 C 0 s canFam3.chr19 50625769 319 + 53741614 GTGGGGCTGGTCCTGGGAGCAGCTGTGAGCGCAGGACGACCTC-AGGATTAACGGTC---------------------GCGCGTC-------CAGCCACACAGCCCTGGACGCTGGTCCTGTGCCTAGGCTGGGCCCTGAGCCCTCAAGCAGCCCTCGAGGTT-TG---GTCCGGCCGGAGACTCACCCACGGTGGCTGCGCCCCGGACAGGGCAAGGCTGTGCGTGGAGGGCGGCGGCCTG-----------------------------CGCACAGCCCT--------GC--------CGAGGTGAGGGCTTGGCTCGCTCCACTTAGAGGAGCGTGAGACCCGCCACACG------GGAAGGAAGGCCCTGGGAGCGCCT---------------GCGCCAGGCCTCCCTCCTCA i canFam3.chr19 C 0 C 0 e panTro4.chr2B 153150686 54 + 247518478 I e ponAbe2.chr2b 38354446 2961 + 135000294 M e mm10.chr2 49714029 70 + 182113224 I a score=176715.000000 s hg38.chr2_GL582966v2_alt 37969 100 + 96131 GAGCAGAAGATAATGAGGGCATAGCTGGTGATAATGAGGGCATGGCTGGTGTGTGTAAACGTGAGAGC-TGGGCTTTTGAGATGTGGACTGAAAAAGCAGA s panTro4.chr2B 153150740 100 + 247518478 GAGCAGAAGATAATGAGGGCATGGCTGGTGATAATGAGGGCATGGCTGGTGTGTGTAAACGTGAGAGC-TGGGCTTTTGAGATGTGGACTGGAAAAGCAGA i panTro4.chr2B I 54 C 0 s nomLeu3.chr20 82307362 78 - 85365473 GAGCAGAA---------------------GATAATGAGGGCATGGCTGGTGTGTGTAAACCTGAGAGC-TGAGCTTTTGAGATGTGGACTG-AAAAGCAGC i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11920943 79 + 106825570 GAGCAGAA---------------------GATAATGAGGGCATGGCTGGTGTGTGTAAACGTGAGAGC-TGGGCTTTTGAGATGTGGAGTAAAAAAGCATC i rheMac3.chr12 C 0 I 115 s macFas5.chr12 37625279 79 + 132586672 GAGCAGAA---------------------GATAATGAGGGCATTGCTGGTGTGTGTAAACGTGAGAGC-TGGGCTTTTGAGATGTGGAGTAAAAAAGCATC i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11282475 79 + 104110932 GAGCAGAA---------------------GATAATGAGGGCATGGCTGGTGTGTGTAAACGTGAGAGC-TGGGCTTTTGAGATGTGGAGTAAAAAAGCATC i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34379708 79 + 128595539 GAGCAGAA---------------------GATAATGAGGGCATGGCTGGTGTGTGTAAACGTGAGAGC-TGGGCTTTTGAGATGTGGAGTAAAAAAGCATC i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87865106 79 - 158406734 GAGCAGAA---------------------GATAATGAGGGCATGGCTGGTGTGTGTAAACGTGAGAGC-TGGGCTTTTGAGATGTGGAGTAGGAAAGAAGC i calJac3.chr6 C 0 C 0 s canFam3.chr19 50626088 68 + 53741614 ----------------------------CGGCGGCGA--GCGGGGCTGGTTGGTGTCCCCG---GAGCGTGGGCTCCTGAGAGCTGACGGAGAGGAGACGC i canFam3.chr19 C 0 C 0 e ponAbe2.chr2b 38354446 2961 + 135000294 M e mm10.chr2 49714029 70 + 182113224 I a score=37528.000000 s hg38.chr2_GL582966v2_alt 38069 13 + 96131 AGTGCCCTTCACT s panTro4.chr2B 153150840 13 + 247518478 AGTGCCCTTCACT i panTro4.chr2B C 0 C 0 s nomLeu3.chr20 82307440 13 - 85365473 AGTGCCCTTCACT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11921137 13 + 106825570 AGTGCCCTTCACT i rheMac3.chr12 I 115 C 0 s macFas5.chr12 37625358 13 + 132586672 AGTACCCTTCACT i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11282554 13 + 104110932 AGTGCCCTTCACT i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34379787 13 + 128595539 AGTGCCCTTCACT i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87865185 13 - 158406734 AGTGCCCTTCACT i calJac3.chr6 C 0 C 0 s canFam3.chr19 50626156 13 + 53741614 GGTGCCCCCACCT i canFam3.chr19 C 0 C 0 e ponAbe2.chr2b 38354446 2961 + 135000294 M e mm10.chr2 49714029 70 + 182113224 I a score=337875.000000 s hg38.chr2_GL582966v2_alt 38082 120 + 96131 AAAACCA---------GAGTGGCAGGATATTGCCAACTTTCCTTTGAAACTTGACACACA-CATTGGTTCTAAACTTACAGAAGGTGGCTACTTAGCTCCCCTCAACATTTCCTGGGTATTGATATTTCC s panTro4.chr2B 153150853 120 + 247518478 AAAACCA---------GAGTGGCAGGATATTGCCAACTTTCCTTTGAAACTTGACACGCA-CGTTGGTTCTAAACTTACAGAAGGTGGCTACTTAGCTCCCCTCAACATTTCCTGGGTATTGATATTTCC i panTro4.chr2B C 0 C 0 s nomLeu3.chr20 82307453 120 - 85365473 AAAACCA---------GAGTGGCAGGATATTGCCAACTTTCCTTTGAAACTTGAGACGCA-CATTGGTTCTAAACTTATAGAAGGTGGCTACTTAGTTCCCCTCAACATTTCCTGGGTATTGATATTTCC i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11921150 120 + 106825570 AAAACCA---------GAGCAGCAGGATATTGCCAACTTTCCTTTGAAACTCAACACACA-CATTGGTTCTAAACTTGTAGGAGGTGGCTACTTAGTTCCCCTCAACATTTCCTGGGTATTGATATTTCC i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37625371 120 + 132586672 AAAACCA---------GAGCAGCAGGATATTGCCAACTTTCCTTTGAAACTCAACACACA-CATTGGTTCTAAACTTGTAGGAGGTGGCTACTTAGTTCCCCTCAACATTTCCTGGGTATTGATATTTCC i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11282567 120 + 104110932 AAAACCA---------GAGCAGCAGGATATTGCCAACTTTCCTTTGAAACTCAACACACA-CATTGGTTCTAAACTTGTAGGAGGTGGCTACTTAGTTCCCCTCAACATTTCCTGGGTATTGATATTTCC i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34379800 120 + 128595539 AAAACCA---------GAGCAGCAGGATATTGCCAACTTTCCTTTGAAACTCAACACACA-CATTGGTTCTAAACTTGCAGGAGGTGGCTACTCAGTTCCCCTCAACATTTCCTGGGTATTGATATTTCC i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87865198 119 - 158406734 AAAATCA---------GGGTAGCAGGATATTGGCAATTTTCCTTTGAAACTTGACACACA-CATTGGCTCTAAACCTGTAGGAGGGAGCTACTTAGTTCCTCTTAACATTTCCTGGGTA-TGATAGTTCC i calJac3.chr6 C 0 I 2538 s mm10.chr2 49714099 121 + 182113224 AAAAGAA---------AGCTGGCAGGATATTGCCAAGTTCCTTTTGAATTATGGGATAGATTGTTGGATCTAAACTTTTAGGAGGCAGATACTTAATTTACTTCAGTGTTCCTTGGGTACTGATATTTCT i mm10.chr2 I 70 C 0 s canFam3.chr19 50626169 115 + 53741614 ---GTCACCTGTCACCGAGGGACAGGGGATTTCTGACTTTCTTCGGAAACTCGAAGCGAG-CATCGGCTCCAAACTTGGAGGAGCCCGCGGCCTGGTTCGCGTC----CCGCCTGGGGGCTGC------- i canFam3.chr19 C 0 C 0 e ponAbe2.chr2b 38354446 2961 + 135000294 M a score=873187.000000 s hg38.chr2_GL582966v2_alt 38202 363 + 96131 ACATGGCAGTCTCCACGAGTTAAAGAGGCCTTGTCAATTGTGTGCAGTCT-C----CTGGGAAAAAGATTTCTTTCTTTGCATG---GTAT--TTATAATTTAAGAGTTTGGCTGCTATACTTCAGCTGCTGGAGAGCAAGGAAGGGGTATGTGTAGC------------------------AAAgtgtgtgtgtgtgtgtgCGCGCGC--GCACACAC--ACACATGCTTGTGCTTTTTCCTACTTGCTGTTACATAGAATGAAGTAACAATACAAAGGAGTAG-------GAAAT------------CAACTACAGATCAGGTGCAGGCAGAT-AATGGAGATAACTGAAAAGAGGTAAGTTTGATC-CAGCTGGCAGTGTTGGGACTGTGCCACAGGACAGGGCATGCCCTGCCTTATG s panTro4.chr2B 153150973 365 + 247518478 ACATGGCAGTCTCCACGAGTTAAAGAGGCCTTGTCAATTGTGTGCAGTCT-C----CTGGGAAAAAGATTTCTTTCTTTGCATG---GTAT--TTATAATTTAAGAGTTTGGCTGCTATACTTCAGCTGCTGGAGAGCAAGGAAGGGGTATGTGTAGC------------------------AAAgtgtgtgtgtgtgtgtgcgcgcgc--gcgcgcgcgcacacatgcttgtgcTTTTTCCTACTTGCTGTTACATAGAATGAAGTAACAATACAAAGGAGTAG-------GAAAT------------CAACTACAGATCAGGTGCAGGCAGAT-AATGGAGATAACTGAAAAGAGGTAAGTTTGATC-CAGCTGGCAGTGTTGGAACTGTGCCACAGGACAGGGCATGCCCTGCCTTATG i panTro4.chr2B C 0 C 0 s nomLeu3.chr20 82307573 363 - 85365473 ACGTTGCGGTCTCAACAAGTTAAAGAGGCCGTGTCAATTGTGCACAGTCT-C----CTGGGGAAAAGATTTCTTTCTTTGCATG---GTAT--TTATAATTTAAGAGTTTGGCTGCTATACTTCAGCTGCTGGAGAGCAAGGAAGGAGTATGTGTAGC------------------------AAAgtgtgtgtgtgtgtgtgtgcgtgt--gtgtgtgt--gCGCATGCTTGTGCTTTTTCCTACTTGCTATTACATAGAATGAAGTAGCAATACAAAGGAGTAG-------GAAAT------------CAACTACAGATcaggtgcaggcagat-aatggagataagtgaaaagaggtaagtttgatc-cagttggcagtgatgggactgtgccacaggacagggcatgccctgccttaaA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11921270 366 + 106825570 ACATTGCGGTCTCAACGAGTTAAAGAGGCCTTGTCAATAGTGTGCACTCTCC----CCGGGAGAAAGATTTCTTTCTTTGCATG---GTAT--TTATAATTTAAGACTTTGGCTGCTATACTTCAGCTGCTGGAGAGCAAGGAAGGAGTGTGTGTAGC------------------------CGAgtgtgtgtgcatgtgtgtgtgtgt--gcatgtgCATGCGCATGCTTGTGCTTTTTCCTACTTGCTGTTATATAGAATGAAGTAGCAATACAAAGGAGTAG-------GAAAT------------CAACTACAGATCAGGTGCAGGCAGAT-AATGGAGATAAGTGAAAATAGATAAGTTTGATG-CAGTTGGCAGTGATGGTACTGTGCCACAGGACAGGGCATGCCCTGCCCTAAA i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37625491 366 + 132586672 ACATTGCGGTCTCAACGAGTTAAAGAGGCCTTGTCAATAGTGTGCACTCTCC----CCGGGAGAAAGATTTCTTTCTTTGCATG---GTAT--TTATAATTTAAGACTTTGGCTGCTATACTTCAGCTGCTGGAGAGCAAGGAAGGAgtgtgtgtagc------------------------cgagtgtgtgtgcatgtgtgtgtgtgt--gcatgtgcatgcgcatgCTTGTGCTTTTTCCTACTTGCTGTTATATAGAATGAAGTAGCAATACAAAGGAGTAG-------GAAAT------------CAACTACAGATCAGGTGCAGGCAGAT-AATGGAGATAAGTGAAAATAGATAAGTTTGATG-CAGTTGGCAGTGATGGTACTGTGCCACAGGACAGGGCATGCCCTGCCCTAAA i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11282687 366 + 104110932 ACATTGCGGTCTCAACGAGTTAAAGAGGCCTTGTCAATTGTGTGCACTCTCC----CCaggaaaaagatttctttctttgcatG---GTAT--TTATAATTTAAGACTTTGGCTGCTATACTTCAGCTGCTGGAGAGCAAGGAAGGAgtgtgtgtagc------------------------cgagtgtgtgtgcatgtgtgtgtgtgt--gcatgtgcgtgcgcATGCTTGTGCTTTTTCCTACTTGCTGTTACATAGAATGAAGTAGCAATACAAAGGAGTAG-------GAAAT------------CAACTACAGATCAGGTGCAGGCAGAT-AATGGAGATAAGTGAAAATAGATAAGTTTGATC-CAGTTGGCAGTGATGGTACTGTGCCACAGGACAGGGCATGCCCTGCCCTAAA i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34379920 361 + 128595539 ACATTGCGGTCTCAACGAGTTAAAGAGGCCTTGTCAATTGTGTGCACTCTCC----CCGGGAAAAAGATTTCTTCCTTTGCATG---GTAT--TTATAATTTAAGAGTTTGGCTGCTATACTTCAGCTGCTGGAGAGCAAGGAAGGAgtgtgtgtagc------------------------cgagtgtgtgtgcatgtgtgtgtgtgtgcgcatgtgcgtgcgcatgCTTGTGCTTTTTCCTACTTGCTGTTACATAGAATGAAGTAGCAATACAAAGGAGTAG-------GAAAT------------CAACTACAGATCAGGTGCAGGCAGAT-AATGGAGGTAAGTGAAAATAGATAAGTTTGATC--------CAGTGATGGTACTGTGCCACAGGACAGGGCATGCCCTGCCCTAAA i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87867855 390 - 158406734 ACATTGCAGTCTCAATGAATTAAAGAGGCCTTGTGAATTGTGTGCACTCTCC----CTGGGAAAGAGATTTCTTTCTTTGCATG---GTAT--TTGTAATTTAACAGTTTGGATGCTATACTTCAGCAGCTGGACAGCAAGGAAGGAGTGTGTGTAGCAAagagagagagagacagagagagagagagagagagagagagTGTGTGTGT--GCATGCGCATGCACATGCTTATCCTTTTTCCTACTTGCTGTTACATAGAATGAAATAGCAACACAAAGGAGTAG-------GAAAT------------CAACTCCAGATCAGGTACAGGCAGAT-AATGGAGATACGTGAAAAGAGGTAAGTTCGATC-CAGTTGGCAGTGATGGGTCTGTGCCACAGGAGATGGTGTGCCCTGCCCTAAA i calJac3.chr6 I 2538 C 0 s mm10.chr2 49714220 318 + 182113224 ACATTGGGATCTGAACACGCTCTAGGAGCCCTGACAATGG---GTACTTTCC----GTACGGAAGATACTCCTGTCCTTGCATG---GTATGCGTATAATTTAAAAGCCTCACTGCTCCATTCCAGCTGTGAGAGAGCAAGGATGAAGTGTGTGCACA--------------------------------------------------C--GTATGTGC-TGTGAGTGCTTGGTCTGCTGC--AGTTGCCATCACAGAGAATCCAGTGGCAAAGCAAGGCAGGAG-------GAAAT------------CAATTACAAATCAGGTGCAGACAGATGAATGGA--TAAATGAGGACACAT--GTCTAACC-CAGTTGGTGGTGACAG----GTG----AGAAAGAGGCATGCCCTG------- i mm10.chr2 C 0 C 0 s canFam3.chr19 50626284 318 + 53741614 --------------ACAGGCC--AGCGGCGGCGTCGGGTG-GTGCCGTCCCCGCTGCCGAGGGGGGGCCGTCCTTTCGGGCGTGCCCGTGC--CTGGAAGTCCGGCGGTTGGAT---------CAGCCGTGGAAGAGCAAGAGAAGA----------C-----------------------------------------------------GCGCGTGCCTCCCCCTGC-TGCGCTTTCCCCTCTGTGCTGTTCTGTAGACTGAGGCAGGGAAAGAAAGGACTGGAAGGGGTAAAATCGCACGATGTCACAGTGGCAGGTTGGGTCCGGGCCGAT-CCTG--------TGAGGAGAGG--AGGCGGATGGAAGTGGGTTGTCCTGGGACC-TGCTGCAGGAGAGGGCGTTGGCCGCCCGAGG i canFam3.chr19 C 0 C 0 e ponAbe2.chr2b 38354446 2961 + 135000294 M a score=308662.000000 s hg38.chr2_GL582966v2_alt 38565 93 + 96131 TCATTCAAAATTGGTGAAAT-ACTGCACT----ATTACATGCCTAGAGGTTGCTCTCG--------CCCTCCCCCACACCTCCACCTGTACCAATTTTCAACCCTT s panTro4.chr2B 153151338 97 + 247518478 TCATTCAAAATTGGTGAAAT-ACTGCACTGTCTATTACATGCCTAGAGGTTGCTCTCG--------CCCTCCCCTACACCTCCACCTGTACCAATTTTCAACCCTT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38357416 97 + 135000294 TCATTCAAAATTGGTGAAAT-ACTGCACTGTCTATTACATGCCTAGAGGTTGCTCTCG--------CCCTCCCCCACACCTCCACCTGTACCAATTTTCAACCCTT i ponAbe2.chr2b M 2961 C 0 s nomLeu3.chr20 82307936 93 - 85365473 TCATTCGAAATTGGTGAAAT-ACTGCACT----ATTACTTGCCTAGAGGTTGCTCTCG--------CCCTCCCCCACACCTCCACCTGTACCAATTTTCAACTCTT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11921636 97 + 106825570 TCATTCAAAATTGGTGAAAT-ACTACATTGTCTATTACATGCCTAGGGGTTGGTCTCA--------CCCTCCCCCACACCTCCACCTGTACCAATTTTCAACCCTT i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37625857 97 + 132586672 TCATTCAAAATTGGTGAAAT-ACTACATTGTCTATTACATGCCTAGGGGTTGGTCTCA--------CCCTCCCCCACACCTCCACCTGTACCAATTTTCAACCCTT i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11283053 97 + 104110932 TCATTCAAAATTGGTGAAAT-ACTACATTGTCTATTACATGCCTAGGGGTTGGTCTCA--------CCCTCCCCCACACCTCCACCTGTACCAATTTTCAACCCTT i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34380281 97 + 128595539 TCATTCAAAATTGGTGAAAT-ACTACATTATCTATTACATGCCTAGAGGTTGGTCTCA--------CCCTCCCCCACACCTCCACCTGTACCAATTTTCAACCCTT i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87868245 97 - 158406734 TCATTCAAAATTGGTGAAAT-ACTGCACCATCTATTACATGCCTAGAGGTTGGTCTCA--------CCCTCTCCCACACCTCCACCTGTGCCAATTTTCAACCCTT i calJac3.chr6 C 0 C 0 s mm10.chr2 49714538 67 + 182113224 ----------------------------------TTACATATCTAGAGGCTGATCTAAGGTCTAACCCCTCC----TACCTCCACCTGGACCAAGTTTCAGC-CTT i mm10.chr2 C 0 C 0 s canFam3.chr19 50626602 85 + 53741614 TCGTGGAA-----GTGGAATGACCCCCCT----GTCGCGAGCCTGCAGGCCGCC------------CCCCCCCTCAGCCCCCGCTCTGAACCAGCTTTGAGCGCCT i canFam3.chr19 C 0 I 6 a score=348872.000000 s hg38.chr2_GL582966v2_alt 38658 107 + 96131 TGTAGCTTGATGCAtgctatagattgaatgttttgtgcccatccaaattcatatgttgaaatcttaacccctaaggtggtgatagtaggaggtggggcctttgggag s panTro4.chr2B 153151435 107 + 247518478 TGTAGCTTGATGCAtgctatagattgaatgttttgtgcccatccaaattcatatgttgaaatcttaacccctaaggtggtgatagtaggaggtggggcctttgggag i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38357513 107 + 135000294 TGTAGCTTGATGCAtgctatagattgaatgttttgtgtccacccaaattcatgtgttgaaatcttaacccctaaggtggtgatagtacgaggtggggtctttggggg i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82308029 107 - 85365473 TGTAGCTTGATGCAtgctatagattgaatgttttgtgtctacccaaattcatatgttgacatcttaatccctaaggtggtgatagtaggaggtggggcctttgggag i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11921733 107 + 106825570 TGTAGCTCGATGGGtgctatagattgaatgttttgtgtctacccaaattcatatgttgaaatcttaacccctaaggtggtgatagtaggaggtggggcctctaggag i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37625954 107 + 132586672 TGTAGCTCGATGGGtgctatagattgaatgttttgtgtctacccaaattcatatgttgaaatcttaacccctaaggtggtgagagtaggaggtggggcctctaggag i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11283150 107 + 104110932 TGTAGCTCGATGGGTGCTATAGATTGAATGTTTTGTGTCtacccaaattcatatgttgaaatcttaacccctaAGGTGGTGATAGTAGGAGGTGGGGCCTCTAGGAG i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34380378 107 + 128595539 TGTAGCTCGATGGGtgctatagatggaatgttttgtgtctacccaaattcatatgttgaaatcttaacccctaaggtggtgatagtaggaggtggggcctctaggag i chlSab2.chr10 C 0 I 200 s calJac3.chr6 87868342 107 - 158406734 TGTAGCTTGATGGGtgctatagattgaatgttttgtgtccacccaaattcatatgttgaaatattaacgcttaaggtgatggtaataggaggtggggcctttgggag i calJac3.chr6 C 0 C 0 s mm10.chr2 49714605 100 + 182113224 AGAAGCTTGATTGATACTATACACTGTGAG-TTTATGTTCCCTCTAGGACACATGTTGAAATCACAGATCCTGAGGTACTG------GGTGTTGGTTTCTTTGGGAG i mm10.chr2 C 0 C 0 e canFam3.chr19 50626687 6 + 53741614 I a score=8764.000000 s hg38.chr2_GL582966v2_alt 38765 3 + 96131 gtg s panTro4.chr2B 153151542 3 + 247518478 gtg i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38357620 3 + 135000294 gtg i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82308136 3 - 85365473 gtg i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11921840 3 + 106825570 gtg i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37626061 3 + 132586672 gtg i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11283257 3 + 104110932 GTG i papAnu2.chr12 C 0 C 0 s calJac3.chr6 87868449 3 - 158406734 gtg i calJac3.chr6 C 0 C 0 s mm10.chr2 49714705 3 + 182113224 Ttg i mm10.chr2 C 0 I 1854 e canFam3.chr19 50626687 6 + 53741614 I e chlSab2.chr10 34380485 200 + 128595539 I a score=246174.000000 s hg38.chr2_GL582966v2_alt 38768 82 + 96131 attgggttctgaggatggactctcatgaatggcattagtgtcctgtgagttctgagagagcttccttccctctggtctccac s panTro4.chr2B 153151545 82 + 247518478 attgggttctgaggatggactctcatgaatggcattagtgtcctgtgagttctgagagagcttccttccctctggtctccac i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38357623 82 + 135000294 actgggttctgaggatggactcttatgaatggcattagtgtcctgtgagttctgagagagcttccttccctctggtctccac i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82308139 82 - 85365473 attgggttctgaggatggactctcatgaatgggattagtgtcctgtgagttctgagagagcttccttccctctggtctccac i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11921843 82 + 106825570 atagggttctgaggatggaccctcaataatgggattagtgtcctgtgagttctgagagagcttccttccctctggtctccac i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37626064 82 + 132586672 atagggttctgaggatggaccctcaataatgggattagtgtcctgtgagttctgagagagcttccttccctctggtctccac i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11283260 82 + 104110932 ATAGGGTTCTGAGGATGGACCCTCaataatgggattagtgtcctgtGAGTTCTGAGAGAGCTTCCTTCCCTCTGGTCTCCAC i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34380685 82 + 128595539 atagggttctgaggatggaccctcaataatgggattagtgtcctgtgagttctgagagagcttccttccctctggtctccac i chlSab2.chr10 I 200 C 0 s calJac3.chr6 87868452 80 - 158406734 attggggcctgaggatggaccctcatgaatgggattagtgtcctgtgggctctgagagagcttgcttctctctgctctcc-- i calJac3.chr6 C 0 C 0 e canFam3.chr19 50626687 6 + 53741614 I e mm10.chr2 49714708 1854 + 182113224 I a score=522573.000000 s hg38.chr2_GL582966v2_alt 38850 172 + 96131 tatgtaagactataatgagatgccatctgcaaaccccgaagagggcccttacc-----------a--agtgccaagatcatgttggcactctgatcttggacttctagcctccagaactgtaagtaataaattc---tttataagccacccagtctatggtac-tttcttatagcagctccag----gtaaga s panTro4.chr2B 153151627 172 + 247518478 tatgtaagactgtaatgagatgccatctgcaaaccccgaagagggcccttacc-----------a--agtgccaagatcatgttggcactctgatcttggacttctagcctccagaactgtaagtaataaattc---tttataagccacccagtctatggtac-tttcttatagcagctccag----gtaaga i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38357705 173 + 135000294 tatgtaagactataatgagatgccatctgcaaaccccgaagagggcccttacc-----------aggagggccca-accatgctggcactctgatcttggacttctagcctccagaactgtaagtaataaattc---tttataagccacccagtctatggtac-ttttttataacagctcCCG----GTAAGA i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82308221 173 - 85365473 tatgtaagactataatgagatgccatctgcaaaccccgaagaaggccctcacc-----------aggagggccca-accatgctggcactctgatcttggacttctagcctccagaactgtgagtaataaattc---tttataagccacccagtctatggtac-tttcttatagcagctccag----ctaaga i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11921925 174 + 106825570 tatgtaagactataatgagatgccatctgcaaacccagaagagggccctcacc-----------aggagggccca-accatgctggcactctgatcttggacttctagcctccagaactgtaagaaataaattc---tgtataagccacccagtctatggtacttttcttatagcagctgcag----ctaaga i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37626146 174 + 132586672 tatgtaagactataatgagatgccatctgcaaacccagaagagggccctcacc-----------aggagggccca-accatgctggcactctgatcttggacttctagcctccagaactgtaagaaataaattc---tgtataagccacccagtctatggtacttttcttatagcagctgcag----ctaaga i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11283342 174 + 104110932 TATGTAAGACTATAATGAGATGCCATCTGCAAAcccagaagagggccctcacc-----------aggagggccca-accatgctggcactctgatcttggacttctagcctccagaactgtaagaaataaattc---tgtataagccacccagtctatggttcTTTTCTTATAGCAGCTGCAG----CTAAGA i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34380767 174 + 128595539 tatgtaagactataatgagatgccatctgcaaacccagaagagggccctcacc-----------aggagggccca-accatgctggcactctgatcttggacttctagcctccagaactgtaagaaataaattc---tgtataagccactcagtctatggtacttttcttatagcagctgtag----ctaaga i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87868532 178 - 158406734 -atgtaagactagaatgaggtactatctgcaaatccagaagagggccctcacc-----------agaagggccca-accatgctggctctctgatcttgaagttccaccttccagaactataa-aagtaaattcctgtttataaaccacccagtctatggtac-tttcttatagcagctccagctgactaaga i calJac3.chr6 C 0 C 0 s mm10.chr2 49716562 187 + 182113224 tatttgaggataaaaagaggtgtcatcagcaaacccagaagatctccctgaccccatccatccaagaacaggatg-tctgtgtcgccacacggacctccaacttctaacttcc-gagttaggagaaatggttctgt-tgtccagacca--catcctgtggtgc-tttgccatagcagctctgagagactgaga i mm10.chr2 I 1854 C 0 e canFam3.chr19 50626687 6 + 53741614 I a score=56835.000000 s hg38.chr2_GL582966v2_alt 39022 15 + 96131 caGGGGCCACTTCAG s panTro4.chr2B 153151799 15 + 247518478 caGGGGCCACTTCAG i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38357878 15 + 135000294 CAGGGGCCACTTCAG i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82308394 15 - 85365473 caGGGGCCACTTCAG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11922099 15 + 106825570 caGGGGCCACTTCAG i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37626320 15 + 132586672 caGGGGCCACTTCAG i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11283516 15 + 104110932 CAGGGGCCACTTCAG i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34380941 15 + 128595539 caGGGGCCACTTCAG i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87868710 15 - 158406734 TGGGGTCCACTTCAG i calJac3.chr6 C 0 T 3089 s mm10.chr2 49716749 15 + 182113224 TGGCAGCCTCTTTAG i mm10.chr2 C 0 I 1 s canFam3.chr19 50626693 15 + 53741614 CGGGGCCTAGCGCAG i canFam3.chr19 I 6 C 0 a score=616264.000000 s hg38.chr2_GL582966v2_alt 39037 179 + 96131 AATGCAGGCCTAGCAGTTTTCTCCTCTGGGCACTGTTGAACCTTGATTCTCAGAAGGCGGCTTGTGGCTCATATCACATATACTACACTAAGCTTTAATTCCTTTCTGACATTGCCATGGAGGCAGGATAACTCCGGGCATGTGCATG-TGG--CT-AAGGAGAGCCACCCACTGGCCTGGTT s panTro4.chr2B 153151814 179 + 247518478 AATGCAGGCCTAGCAGTTTTCTCCTCTGGGCACTGTTGAACCTTGATTCTCAGAAGAAGGCTTGTGGCTCATATCACATATACTACACTAAGCTTTAATTCCTTTCTGACATTGCCATGGAGGCAGGATAACTCCGGGCATGTGCATG-TGG--CT-AAGGAGAGCCACCCACTGGCCTGGTT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38357893 179 + 135000294 AATGCAGGCCTGGCAGTTTTCTCCTCTGGGCACTGTTGAACCTTGATTCTTAGAAGAAGGCTTGTGGCTGGTATCACATACACTACACTAAGCTTTAATTCCTTTCTGACATTGCCATGGAGGCAGGATAACTCCGGGCATGTGCATG-TGG--CT-AAGGAGAGCCACTCACTGGCCTGGTT i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82308409 179 - 85365473 AATGCAGGCCTAGCAGTTTTCTCCTCTGGGCACTGTTGAACCTTGATTCTCAGAAGAAGGCTTGTGGCTCGTATCACATACACTACACTAAGCTTTAATTCCTTTCTGACATTGCCATGGAGGCAGGATAACTCCAGGCATGCGCATG-TGG--CT-AAGGAGAGCCACCCACTGGCCTGGTT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11922114 179 + 106825570 AACGTAGGCTGAGCAGTTTTCTCCTCTGGGCACTGTTGAACCTTGATTCTCAGAAGAAGGCCTGTGACTCATATCACATACACTACACTAAGCTTTAATTCCTTTCTGACATTACCATGGAGGCAGGATAACTCCGGGCTTGTGCATG-GGG--CT-AAGGAGAGCCACCCACTGGCCTGGTT i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37626335 179 + 132586672 AATGTAGGCCGAGCAGTTTTCTCCTCTGGGCACTGTTGAACCTTGATTCTCAGAAGAAGGCCTGTGACTCATATCACATACACTACACTAAGCTTTAATTCCTTTCTGACATTACCATGGAGGCAGGATAACTCCGGGCTTGTGCATG-GGG--CT-AAGGAGAGCCACCCACTGGCCTGGTT i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11283531 179 + 104110932 AATGTAGGCCGAGCAGTTTTCTCCTCTGGGCACTGTTGAACCTTGATTCTCAGAAGAAGGCCTGTGACTCATATCACATACACTACACTAAGCTTTAATTCCTTTCTGACATTACCATGGAGGCAGGATAACTCCGGGCATGTGCATG-GGG--TT-AAGGAGAGCCACCCACTGGCCTGGTT i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34380956 179 + 128595539 AATGTAGGCCGAGCAGTTTTCTCCTCTGGGCACTGTTGAACCTTGATTCTCAGAAGAAGGCCTGTGACTCATATCACATACACTACACTAAGCTTTAATTCCTTTCTGACATTACCATGGAGGCAGGATAACTCTGGGCATGTGCATG-GGG--CT-AAGGAGAGCCACCCACTGGCCTGGTT i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87865636 179 - 158406734 AATGTAGGTCTAGCAGTTTTCTTCTCTGGGCACTGTTGAACCTTGATTCATAGAATAAGGCCTGTGACTCACAGCACATACACTACACTAAGCTTTAATTCCTTTATGACATTGCCTTGAGGGCAGGATAACTCTAGGCATGTCCATG-TGG--CT-AAGGAGAGCTGCACACTGGCCTGGTT i calJac3.chr6 T 3089 C 0 s mm10.chr2 49716765 174 + 182113224 ACTGCAAGCTGGAC--TGTTCTCCCCTGCATATAGTTGGGCCTTGGTTCTCAGATGAGGACCTGTGACTTGGAGCGTATATTCTGC---GAGCCT--AATTCTTTCTGGCATTGCTTCTGAGGCATACTAGCCCTCTACACATGCATG-GAGAACT-AAGGAGAGGCCCCGTCTTTTCTTGtt i mm10.chr2 I 1 I 365 s canFam3.chr19 50626708 149 + 53741614 AACACAAGGCTGCCGGTTTTGTCCTCGGGGCACCGTGGAA---------------------------CTCGGGGCGAACCCACCACGCTCGGCCGTGCCTCCTCTCTGCGCCTGGCATCG-GGCAGGCGGGCTCAGGACACCCGCATGCTGG--CTGAAGGGGAGGCC----CTGCCTTGATT i canFam3.chr19 C 0 C 0 a score=740237.000000 s hg38.chr2_GL582966v2_alt 39216 244 + 96131 CCGTTCCCCAGG------------GTGCTag-----ttaggatccttggattgcaaacgacaggaattgacactgcctggctaaagcaaaaagagaatgtgttagaaggatacgaatgattcgcagactccaa-----agcagaggcaacaggctCCGACAAGTGTAGGCTGGGGCTGCTTCAGGGAT-------ACAGGCAGCAGAGACAGGCAGGTCTCTTAAGTGGCCACACCTGGAATTAAT----------GCTTTTTCCCTTCTGTATGTGATTATG-- s panTro4.chr2B 153151993 244 + 247518478 CCGTTCCCCAGG------------GTGCTag-----ttaggatccttggattgcaaacgacaggaattgacactgcctggctaaagcaaaaagagaatgtgttagaaggatacgaatgattcgcagactcCAA-----AGCAGAGGCAATAGGCTCCGACAAGTGTAGGCTGGGGCTGCTTCAGGGAT-------ACAGGCAGCAGAGACAGGCAGGTCTCTTAAGTGGCCACACCTGGAATTAAT----------GCTTTTTCCCTTCTGTATGTGATTATG-- i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38358072 244 + 135000294 CCGTTCCCCAGG------------GTGCTag-----ttaggatccttggcttgcaagcgacaggaattgacactgcctggctaaagcaaaaagagaatgcgttagaaggatacgaatgattcgcagactccaa-----agcagaggcaacaggctCTGACAAATGTAGGCTGGGTCTGCTTCAGGGAT-------ACAGGCAGCAGAGACAGGCAGGTCTCTTAAGTGGCCACACCTGGAATTAAT----------GCTTTTTCCCTTCTGTATGTGATTATG-- i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82308588 244 - 85365473 CTGTTCCCCAGG------------ATGCTag-----ttaggatccttggattgcaagcgacaggaattgacactgcctggctaaagcaaaaagagaatgcgttagaaggatacgagtgactcacagcctccaa-----agcagaggcaacaggctCCGACAAATGTAGGCTGGGGCTGCTTCAGGGAT-------ACAGGCAGCAGAGACAGGCAGGTCTCTTAAGTGGCCACAGCTGGAATTAAT----------GCTTTTTCCCGTCTGTATGTGGTTATG-- i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11922293 256 + 106825570 CCGTTCCCCAGG------------GTGCTag-----ttaggatccttgggttgcaagcgacaggaattgacactgcctggctaaagccaaaagagaatgcgttagaaggacacgaatgattcgcagactccaaaggatagcggaggcaacaggctCCGACAAGTGTAGGCTGGGGCTGCTTCAGGGATGCAGGCAGCAGGCAGCAGAGACAGGCAGGTCTCTTAAGTGGCCGCACCTGGAATTAAC----------GCTTTTTCCCTTCTCTATGTGATTATG-- i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37626514 256 + 132586672 CCGTTCCCCAGG------------GTGCTag-----ttaggatccttgggttgcaagcgacaggaattgacactgcctggctaaagccaaaagagaatgcgttagaaggacacgaatgattcgcagactccaaaggatagcagaggcaacaggctCCGACAAGTGTAGGCTGGGGCTGCTTcagggatgcaggcagcaggcagcagagacaggcaggTCTCTTAAGTGGCCGCACCTGGAATTAAC----------GCTTTTTCCCTTCTCTATGTGATTATG-- i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11283710 256 + 104110932 CCGTTCCCCAGG------------GTGCTAG-----TTAGGATCCTTGGGTTGCAAGCGACAGGAATTGACACTGCCTGGCTAAAGCCAAAAGAGAATGCGTTAGAAGGACACGAATGATTCGCAGACTCCAAAGGATAGCAGAGGCAACAGGCTCCGACAAGTGTAGGCTGGGGCTGCTTCAGGGAtgcaggcagcaggcagcagaGACAGGCAGGTCTCTTAAGTGGCCGCACCTGGAATTAAC----------ACTTTTTCCCTTCTCTATGTGATTATG-- i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34381135 256 + 128595539 CTGTTCCCCAGG------------GTGCTag-----ttaggatccttgggttgcaagcgacaggaattgacactgcctggctaaagccaaaagagaatgcgttagaaggacacgaatgattcgcagactccaaaggatagcagaggcaacaggttCCAACAAGTGTAGGCTGGGACTGCTTcagggatgcaggcagcaggcagcagagacaggcaggTCTCTTAAGTGGACGCACCTGGAATTAAC----------GCTTTTTCCCTTCTCTATGTGATTATG-- i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87865815 246 - 158406734 CCATTCCCCAGG------------GTGCTAG-----TTAGGATCCTTGGTTTGCCAGAGACAGGAATTGACACTGCCTGGCTAAGGGAAAAAGAGAACGTTTT---AGGATATGAATGATTAGCAGACTCCAAAGTATAGCAGAGGCACCAGGATCCGAGAGGTGTAGGCTGGGGCTGCTCCAGGGAT-------ACAGGCAGCAGAAACAGGCAGGTCTCTTAAGTGGCCACACCTGGAATTAAT----------GCTTTTCCCCATTTCTATGTGATTCTG-- i calJac3.chr6 C 0 C 0 s canFam3.chr19 50626857 251 + 53741614 ----TTGTAAGGAAGGAAGAAGGAGGGCCAGGCGCCTTGGGGTGCCGGGGTCGGAACGGGTCGGAACGGGCCCTGCCTGCCTTAAGCAGAACAGGAAGGCACGCGGTATCTGTGAGCGACTCA-AGAACCCAA-GAAGAGCCGA-GCAGCCGGCCTCACCTGGCA-AACCTGGGCCTACT-----------------------CAGAGGC---CAGGCCTCCCAAGGGGCCGCGCCTGCCGTGGATCCCCTCTCGGGTTTCCTCCCCCTTCCTTGCACCCCCTTC i canFam3.chr19 C 0 C 0 e mm10.chr2 49716939 365 + 182113224 I a score=314022.000000 s hg38.chr2_GL582966v2_alt 39460 93 + 96131 TTGGAGAAGCAGAGGCCCAGGATAGAAGTGGGAATACTGTGCTTGCTGGTGTGCCTTGGCTGGGGAAGGGCAGGGCACTTTGATACATTGTCT s panTro4.chr2B 153152237 93 + 247518478 TTGGAGAAGCAGAGGCCCAGGATAGAAGTGGGAATACTGTGCTTGCTGGTGTGCCTTGGCTGGGGAAGGGCAGGGCACTTTGATACATTGTCT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38358316 93 + 135000294 TTGGAGAAGCAGAGGCCCAGGATAGAAGTGGGAATACTGTGCTTGCTGGTGTGCCTTGGCTGGGGAAGGGCAGGGCACTTTGATAAATTGTCT i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82308832 93 - 85365473 TTGGAGAAGCAGAGACCCAGGATAGAAGTGGGAATACTGTGCTTGCTGGTGTGCCTTGGCTGGGGAAGGGCAGGGCACTTTGATAAATTGTCT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11922549 93 + 106825570 TTGGAGAAGCAGAGGCCCAGGATAGAAGTGGGAATACTGTGCTTGCTGGTGTGCCTTGGCTGGGGAAGAGCAGGGCACTTTGATCAATTGTCT i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37626770 93 + 132586672 TTGGAGAAGCAGAGGCCCAGGATAGAAGTGGGAATACTGTGCTTGCTGGTGTGCCTTGGCTGGGGAAGAGCAGGGCACTTTGATCAATTGTCT i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11283966 93 + 104110932 TTGGAGAAGCAGAGGCCCAGGATAGAAGTGGGAATACTGTGCTTGCTGGTGTGCCTTGGCTGGGGAAGAGCAGGGCACTTTGATCAATTGTCT i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34381391 82 + 128595539 TTGGAGAAGCAGAGGCCCAGGATAGAAGTGGGAATACTGTGCTTGCTGGTGTGCCTTG-----------GCAGGGCACTTTGATCAATTGTCT i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87866061 93 - 158406734 TTGGTGAAGCAGAGGCCCAAGATAGAAGGGAGAATACTGTACCTACTGGTGTGCCTTGGCTGGGGAGAGGCAGGGCACTTTGATAAATTGTCT i calJac3.chr6 C 0 I 2841 s mm10.chr2 49717304 81 + 182113224 TTGGAGATTTGGAGGAGCAGGATAGACGTGGCCATAGCGTGCTT-----TGTG---TAGTCTGTGAAGGGCAGGCTACTTTG----ACTGTGT i mm10.chr2 I 365 I 4 s canFam3.chr19 50627108 81 + 53741614 CTTGAGGCCCAGAGGCCTGGGAGAGAAG-GGAGCCACTGCGCGTGGTgctgggccctc----------cgctgggccctccgACCCGTCCTC- i canFam3.chr19 C 0 C 0 a score=40632.000000 s hg38.chr2_GL582966v2_alt 39553 19 + 96131 GATGAAGACTGCATGCAGT s panTro4.chr2B 153152330 19 + 247518478 GATGAAGACTGCAGGCGGT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38358409 19 + 135000294 GATGAAGACTGCACGCAGT i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82308925 19 - 85365473 GATGAAGACTGAATGCAGT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11922642 19 + 106825570 GATGAAGACTGCACACAGT i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37626863 19 + 132586672 GATGAAGACTGCACACAGT i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11284059 19 + 104110932 GATGAAGACTGCACACAGT i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34381473 19 + 128595539 GATGAAGACTGCACACagt i chlSab2.chr10 C 0 C 0 s mm10.chr2 49717389 14 + 182113224 GGTAAAGcctgagt----- i mm10.chr2 I 4 C 0 s canFam3.chr19 50627189 8 + 53741614 -----------CACGCCCT i canFam3.chr19 C 0 C 0 e calJac3.chr6 87866154 2841 - 158406734 I a score=9327.000000 s hg38.chr2_GL582966v2_alt 39572 4 + 96131 TTAG s panTro4.chr2B 153152349 4 + 247518478 TTAG i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38358428 4 + 135000294 TTAA i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82308944 4 - 85365473 TGAG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11922661 4 + 106825570 TGAG i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37626882 4 + 132586672 TGAG i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11284078 4 + 104110932 TGAG i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34381492 4 + 128595539 tgag i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87868995 4 - 158406734 TGGG i calJac3.chr6 I 2841 C 0 s mm10.chr2 49717403 4 + 182113224 ttag i mm10.chr2 C 0 I 877 s canFam3.chr19 50627197 4 + 53741614 GGAA i canFam3.chr19 C 0 C 0 a score=1595589.000000 s hg38.chr2_GL582966v2_alt 39576 501 + 96131 GGGG--CTAATTCCTTAAAA-GGAAGTTGAGGTGCTATTTTCTAAGAATGGGTGTC--GAGTGGCTGAAAAG-CAACAAAT-GTTCACCACAATCTACTAGTGACATCTTGTGGGCCGATATC-GATGGCTGGTCTTTCTTCGAATCTGGAGGCTCTGTTGGCTCTTTAGCCTCACGGAGATTTGTTCAGCC-TGCTTGCTTAAGGAACAGATAGGATGGAGTGGGGCAGTTGCCAG-AAAATGGAATTTTTTTT---------------AAAGCTCTATTGCTTTGTTGC-TCATATGTGC-GGGAGAGACTCGAACAATCCTATATATGGAGATAGAGTTAAATAGTTGGATTCAGAGTGAATTACAGCTCCAGCTCATGCT-AACC---TCCTCCCAATCCATCAGGAAAACTCTTGA---CAGGAGGATGGGGAGGGAGGGGTGAAGTCTGGATGCATGG--------------------------CTTCCTGTTGCTGCCAGGTCAGTCTTCACACATGCTGTCT----TCTGATA---CTTTGAATTTTGCACTTG------AAAAAT s panTro4.chr2B 153152353 500 + 247518478 GGGG--CTAATTCCTTAAAA-GGAAGTTGAGGTGCTATTTTATAAGAATGGGTGTC--GAGTGGCTGAAAAG-CAACAAAT-GTTCACCACAATCTACTAGTGACATCTTGTGGGCCGATATC-GATGGCTGGTCTTTCTTCGAATCTGGAGGCTCTGTTGGCTCTTTAGCCTCACGGAGATTTGTTCAGCC-TGCTTGCTTAAGGAACAGATAG-ATGGAGTGGGGCAGTTGCCAG-AAAATGGAATTTTTTTT---------------AAAGCTCTATTGCTTTGTTGC-TCATATGTGC-GGGAAAGACTCGAACAATCCTATATATGGAGATAGAGTTAAATAGTTGGATTCAGAGTGAATTACAGCTCCAGCTCATGCT-AACC---TCCTCCCAATCCATCAGGAAAACTCTTGA---CAGGAGGATGGGGAGGGAGGGGTGAAGTCTGGATGCATGG--------------------------CTTCCTGTTGCTGCCAGGTCAGTCTTCACACGTGCTGTCT----TCTGATA---CTTTGAATTTTGTACTTG------AAAAAT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38358432 500 + 135000294 GGGG--CTAATTCCTTAAAA-GGAAGTTGAGGTGCTATTTTTTAAGAATGGGTGTC--AAGTGGCTGAAAAG-CAACAAAT-GTTCACCACAATCTACTAGTGACATCTTGTGGGCCGATATC-GATGGCTGGTCTTTATTCGAATCTGGAGGCTCTGTTGGCTCTTTAGCCTCACGGAGATTTGTTCAGCC-TGCTTGCTTAAGGAACAGATAG-ATGGAGTGGGGCAGTTGCCAG-AAAATGGAATTTTTTTT---------------AAAGCTCTATGGCTTTGTTGC-TCATATGTGC-GGGAAAGACTCGAACAATCCTATATATGGAGATAGAGTTAGATAGTTGGATTCAGAGTGAATTACAGCTCCAGCTCATGCT-AACC---TCCTCCCAATCCATCAGGAAAACTCTTGA---CAGGAGGATGGGGAGGGAGGGGTGAAGTCTGGGTGCATGG--------------------------CTTCCTGTTTCTGCCAGGTCAGTCTTCACACGTGCTGTCT----TCTGATA---CTTTGAATTTTGCACTTG------AAAAAT i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82308948 503 - 85365473 GGGG--CTAATTCCTTAAAA-GGAAGTTGAGGTGCTATTTTATAAGAATGGGTGTC--GAGTGGCTGAAAAG-CAACAAAT-GTTCACCATAATCTACTAGTGACATCTTGTGGGCCGATATC-GATGGCTGGTCTTTCTTCGAATATGGAGGCTCTGTTGGCTCTTTAGCCTCACGGAGATTTGTTCAGCC-TGCTTGCTTAAGGAACAGATAG-ATGGAGTGGGGCAGTTGCCAG-AAAATGGAATTTTTTTT---------------AAAGCTCTATTGCTTTGTTGC-TCATATGTGC-GGAAAAGACTCAAACAATCCTATATATGGAGATAGAGTTAGATAGTTGGATTCAGAGTGAATTACAGCTCCAGCTCATGCT-AACC---TCCTCCCAATCCATCAGGAAAACTCTTGACAGCAGGAGGATGGGGAGGGAGGGGTGAAGTCTGGGTGCATGG--------------------------CTTCCTGTTGCTGCCAGGTCAGTCTTCACACGTGCTGTCT----TCTGATA---CTTCGAATTTTGCACTTG------AAAAAT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11922665 501 + 106825570 GGGG--CTAATTCCTTAAAA-GGAAGTTGAGCTGCTATTTTGTAAGAATGGGTGTC--GAGTGGCTGAAAAG-CAACAAAT-GTTCACTACAATCTACTAGTGACATCTTGTGGGCCGTAATC-AATGGCTGGTCTTTCTTCGAATCTGGAGGCTCTGTTGGCTCTTTAGCCTCACAGAGATTCGTTCAGCC-TGCTTGCTTAAGGAACAGATAG-ATGGAGTGGGGCAGTTGCCAG-AAAATGGAATTTTTTTTG--------------AAAGCTCTATTGCTTTGTTGC-TCATATGTGC-GGAAAAGACTCGAACAATCCTATATATGGAGATAGAGTTAGATAGTTGGATTCAGAGTGAATTACAGCTCCAGCTCATGTT-AACC---TCCTCCCAATCCATCAAGAAAACTCTTGA---CAGGAGGACGGGGAGGGAGGGGTGAAGGCTGCGTGCACAG--------------------------CTCCCTGTTGCTGCCAGGTCAGTCTTCACATGTGCTCTCT----TCTGATA---CTTTGAATTTTACACTTG------AAAAAT i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37626886 501 + 132586672 GGGG--CTAATTCCTTAAAA-GGAAGTTGAGCTGCTATTTTGTAAGAATGGGTGTC--GAGTGGCTGAAAAG-CAACAAAT-GTTCACTACAATCTACTAGTGACATCTTGTGGGCCGTAATC-AATGGCTGGTCTTTCTTCGAATCTGGAGGCTCTGTTGGCTCTTTAGCCTCACAGAGATTCGTTCAGCC-TGCTTGCTTAAGGAACAGATAG-ATGGAGTGGGGCAGTTGCCAG-AAAATGGAATTTTTTTTG--------------AAAGCTCTATTGCTTTGTTGC-TCATATGTGC-GGAAAAGACTCGAACAATCCTATATATGGAGATAGAGTTAGATAGTTGGATTCAGAGTGAATTACAGCTCCAGCTCATGTT-AACC---TCCTCCCAATCCATCAAGAAAACTCTTGA---CAGGAGGACGGGGAGGGAGGGGTGAAGGCTGCGTGCACAG--------------------------CTCCCTGTTGCTGCCAGGTCAGTCTTCACACGTGCTCTCT----TCTGATA---CTTTGAATTTTACACTTG------AAAAAT i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11284082 501 + 104110932 GGGG--CTAATTCCTTAAAA-GGAAGTTGAGGTGCTATTTTGTAAGAATGGGTGTC--GAGTGGCTGAAAAG-CAACAAAT-GTTCACTACAATCTACTAGTGACATCTTGTGGGCCGTAATC-AATGGCTGGTCTTTCTTCGAATCTGGAGGCTCTGTTGGCTCTTTAGCCTCACAGAGATTCGTTCAGCC-TGCTTGCTTAAGGAACAGATAG-ATGGAGTGGGGCAGTTgccag-aaaatggaattttttttg--------------aaAGCTCTATTGCTTTGTTGC-TCATATGTGC-GGAGAAGACTCGAACAATCCTATATATGGAGATAGAGTTAGATAGTTGGATTCAGAGTGAATTACAGCTCCAGCTCATGCT-AACC---TCCTCCCAATCCATCAAGAAAACTCTTGA---CAGGAGGACGGGGAGGGAGGGGTGAAGGCTGCGTGCACAG--------------------------CTCCCTGTTGCTGCCAGGTCAGTCTTCACACGTGCTCTCT----TCTGATA---CTTTGAATTTtacacttg------aaaaat i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34381496 501 + 128595539 gggg--ctaattccttaaaa-gaaagttgaggtgctattttgtaagaatgggtatc--gagtggctgaaaaa-caacaaat-gttcactacaATCTACTAGTGACATCTTGTGGGCCGTAATC-AATGGCTGGTCTTTCTTCGAATCTGGAGGCTCTGTTGGATCTTTAGCCTCACAGAGATTCGTTCAGCC-TACTTGCTTAAGGAACAGATAG-ATGGAGTGGGGCAGTTGCCAG-AAAATGGAATTTTTTTTT--------------AAAGCTCTATTGCTTTGTTGC-TCATATGTGC-GGAAAAGACTCGAACAATCCTATATATGGAGATAGAGTTAGATAGTTGGATTCAGAGTGAATTACAGCTCCAGCTCATGCT-AACC---TCCTCCCAATCCATCAAGAAAACTCTTGA---CAGGAGGACGGGGAGGGAGGGGTGAAGCCTGCATGCACTG--------------------------CTCCTTGTTGCTGCCAGGTCAGTCTTCACACGTGCTCTCT----TCTGATA---CTTTGAATTTTACACTTG------AAAAAT i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87868999 507 - 158406734 GGGGCCCCATTTCCTAAAAAGGGAAGTTGGGGGTGTATTTAATAAGAATGGGGGTTCGGAGTGGTTGAAAAGCCACCAAAT-GTTCACCAACTTTAACTAGGGACATC-TGTGGGCCGTTATCGGATGGGTGGTCCTTCTTGGAATCTGGAGGCTATGTGGGCTCTTTAGCTTCATGGAGATT-GTTCAGCCTTGCTTGATTAAGGAATAGATAG-AGGGAGTGGGGCAGTTGCCAGAAAAATGGAATTTTTTA----------------AAAGCACTATTGC-TTGTTGCTTCATATGTGCAGAAAAAGACCTGAACAATCCTATATATGGAGATAGATTTAGATAGTTGGATTCAGAGTGAATTATGGCTCCAAATCATGCTAAACC---TCATCCCAATCCATCAAGAAAACTCTTGA---CAGGAGGACCGGGAGGGAGGGGTGAAGGCTGGGTGCATAG--------------------------TTCCCTGTTGCTGCCAGGTCAGTCTTCACACGTTCTCTCT----TCTGATA----TTTGAATTTTGCACTTA------AAAAAT i calJac3.chr6 C 0 C 0 s canFam3.chr19 50627201 498 + 53741614 -GAT--GGAATTCCTCACAA-GG---------------------AGAATGGGAGCC--GAG----TGAAAAA-CACCCACCGGTCCACGGCACTCTGCTAGTGACATCTTGTGGGCTGAGATC-GATCGACAGTC---CTTGGAGTCTGGAAG--GTGTTGGCAGCTCAGCCTCA-GGAGCTCTGTGCAGCC-TCTGTGCTTACGG-ACAGATAC-ATGCAG-GAGGCGGTTGCCA--CGAGTAGGATTGTTTTTGGGGTTTTTTCCTTCCCAGCTCTGTGG-TTTGCTCA-TCATATACAT-GGAAAGGACTTGAAC----------------ATAG--------GGTTGGATTCAGAGTGAGTTATGGCTCCCGGTTCACCC-CGCCGTATCCCCCCAGTTCATCACAAAGACTCTTGA---TGGGAGGATAGGGAGGCGGTGCTGGAATCCCAGGGCCGGGACCCTCGGAAAGGGAATGGGCCCACTTTCCCCATTGCTGCCAGGTCGGTCTTTACACGTGCCCCCTCTTCTTTGATAATTCTTTGAATTTTGCCCTTAttttttaaagat i canFam3.chr19 C 0 I 131 e mm10.chr2 49717407 877 + 182113224 I a score=11187.000000 s hg38.chr2_GL582966v2_alt 40077 3 + 96131 AAT s panTro4.chr2B 153152853 3 + 247518478 AAT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38358932 3 + 135000294 AAT i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82309451 3 - 85365473 AAT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11923166 3 + 106825570 AAT i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37627387 3 + 132586672 AAT i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11284583 3 + 104110932 aat i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34381997 3 + 128595539 AAT i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87869506 3 - 158406734 AAC i calJac3.chr6 C 0 C 0 s canFam3.chr19 50627830 3 + 53741614 AAT i canFam3.chr19 I 131 C 0 e mm10.chr2 49717407 877 + 182113224 I a score=225556.000000 s hg38.chr2_GL582966v2_alt 40080 61 + 96131 -----------------------TTTTTACAGTGATTT----AAGTCA--GAAAAAGGAGGACCTGAAAATCCAGGTGTC---AGAACAAGGA s panTro4.chr2B 153152856 61 + 247518478 -----------------------TTTTTACAGTAATTT----AAGTCA--GAAAAAGGAGGACCTGAAAATCCAGGTGTC---AGAACAAGGA i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38358935 61 + 135000294 -----------------------TTTTTACAGGGATTT----AAGTCA--GAAAAAGGAGGACCTGAAAATCCAGGTGTC---AGAACAAGGA i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82309454 61 - 85365473 -----------------------TTTTTACAGGGATTT----AAGTCA--GAAAAAGGAGAACCTGAAAATCCAGGTGTC---AGAACAGGGA i nomLeu3.chr20 C 0 M 2145 s rheMac3.chr12 11923169 64 + 106825570 -----------------------TTTTTACAGGGATTT----AAGTCA--GAAAAAGGAGGACCTGAAAATCCAGGTGTCAGGAGAACAGGGA i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37627390 64 + 132586672 -----------------------TTTTTACAGGGATTT----AAGTCA--GAAAAAGGAGGACCTGAAAATCCAGGTGTCAGGAGAACAGGGA i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11284586 64 + 104110932 -----------------------tttttacaggGATTT----AAGTCA--GAAAAAGGAGGACCTGAAAATCCAGGTGTCAGGAGAACAGGGA i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34382000 64 + 128595539 -----------------------TTTTTACAGGGATTT----AAGTCA--GAAAAAGGAGGACCTGAAAATCCAGGTGTCAGGAGAACAGGGA i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87869509 63 - 158406734 -----------------------TTTATACAGGGATTT----AAGTCA--GAAAAAGGAGGACCTGAAAATCT-GGTGTCAGGAGAGCAGGGA i calJac3.chr6 C 0 C 0 s mm10.chr2 49718284 66 + 182113224 -----------------------TTTTTACGGAGGTTC----GTGTCAGGGAGAAAAAATGACCCAAAAATCCAGCTGTTGGGGTGTCAGGGA i mm10.chr2 I 877 C 0 s canFam3.chr19 50627833 90 + 53741614 TTTGCCCGTTTAAAAGTGGCCACATCCTACGGGGGGCTTAAGAAGTCA--GA-AAAGGAGGCCCTGAAGATCCAGGTGTCAGAAGTACAGGGA i canFam3.chr19 C 0 C 0 a score=339867.000000 s hg38.chr2_GL582966v2_alt 40141 123 + 96131 AATGACCTGACAAACTGGTGTATCTGCAGATTTTCTTCTCTTGAATAATTGCCTATAAGATTAAAAAACAG--TGGATATAGATTTACCTTATCTGCTGAAGTCATGCAAAGAAATGATTTCATC s panTro4.chr2B 153152917 123 + 247518478 AATGACCTGACAAACTGGTGTATCTGCAGATTTTCTTCTCTTGAATAATTGCCTATAAGATTAAAAAACAG--TGGATATAGATTTACCTTATCTGCTGAAGTCATGCAAAGAAATGATTTCATC i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38358996 123 + 135000294 AATGACCTGACAAACTGGTGTATCTGCAGATTTTCTTCTCTTGAATAATTGCCTATAAGATTAAAAAACAG--TGGATATAGATTTACCTTATCTGCTGAAGTCATGCAAATAAATGATTTCATC i ponAbe2.chr2b C 0 C 0 s rheMac3.chr12 11923233 122 + 106825570 AATGA-CTGGCAAATTGGTGTATCTGCAGATTCACTTCTCTTGTATAATTGCCTGTAAGATTAAAAAACAC--TGGATGTAGATTTACCTTATCTGCTGAAGTCATGTGAAGAAATAATTTCATC i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37627454 122 + 132586672 AATGA-CTGGCAAATTGGTGTATCTGCAGATTCACTTCTCTTGTATAATTGCCTGTAAGATTAAAAAACAG--TGGATGTAGATTTACCTTATCTGCTGAAGTCATGTGAAGAAATAATTTCATC i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11284650 122 + 104110932 AATGA-CTGGCAAATTGGTGTATCTGCAGATTCACTTCTTTTGTATAATTGCCTGTAAGATTAAAAAACAG--TGGATGTAGATTTACCTTATCTGCTGAAGTCATGCAAAGAAACAATTTCATC i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34382064 122 + 128595539 AATGA-CTGGCAAATTGGTGTATCTGCAGATTCACTTCTCTTGTATAATTGCCTGTAAGATTAAAAAACTG--TGGATGTAGATTTACCTTATCTGCTGAAGTCATGCAAAGAAATAATTTCATC i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87869572 123 - 158406734 AATGATCTGACAGTCTGGTGTATCTGCAGATTCTTTTCTCTTGAATAATTGCCTATGAGATTGAAAAACAG--TGGATGTAGGTTTACCTTATCTACTAAAGTCATACAAAGAAATGATTTCATC i calJac3.chr6 C 0 C 0 s mm10.chr2 49718350 115 + 182113224 ------AAGGTGGTCTGGTGTGTCTGCAGAGTCTCTCCTGTTGAACAATTAGGTATACAGT--GAGTGTAG--TGGGTTCCTATTGATGCTGTCTGGGGAAATCATAACAGTAAATGCTTTCTTT i mm10.chr2 C 0 I 134 s canFam3.chr19 50627923 117 + 53741614 AGTGACCCAACAGTAGGGCACATCTGCAG-----TGTCTCGTGAATAATTACATAC---ATTAAATAACAGAATGGATGTGGATTTACCCCATCTGCTGAAGTCATGCAAAGAAATGATTTCATC i canFam3.chr19 C 0 C 0 e nomLeu3.chr20 82309515 2145 - 85365473 M a score=127492.000000 s hg38.chr2_GL582966v2_alt 40264 44 + 96131 ACAGGCTGAGAAAGTGTGGAAAAATCGGCAG----TCTCTAACGCAGA s panTro4.chr2B 153153040 44 + 247518478 ACAGGCTGAGAAAGTGTGGAAAAATCGGCAG----TCTCTAACGCAGA i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38359119 44 + 135000294 ACAGGCTGAGAAAGTGTGGAAAAATCGGCAG----TCTCTAACGCAGA i ponAbe2.chr2b C 0 I 654 s rheMac3.chr12 11923355 44 + 106825570 ACAGACTGAGGAAGTGTGGAAAAATCGGCAG----TCTCTAACGCAGA i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37627576 44 + 132586672 ACAGACTGAGGAAGTGTGGAAAAATCGGCAG----TCTCTAACGCAGA i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11284772 44 + 104110932 ACAGACTGAGGAAGTGTGGAAAAATCGGCAG----TCTCTAACGCAGA i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34382186 44 + 128595539 ACAGACTGAGAAAGTGTGGAAAAATCGGCAG----TCTCTAACGCAGA i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87869695 44 - 158406734 TCAGGCTGAGAAAGTGTGGAACAATTGGCAG----TCTTTAAAGCAGA i calJac3.chr6 C 0 C 0 s canFam3.chr19 50628040 48 + 53741614 ACAGGCTGGGAAGGCGTGGAAAAATCGGCAATCTCTCTCTAGAACAGA i canFam3.chr19 C 0 C 0 e nomLeu3.chr20 82309515 2145 - 85365473 M e mm10.chr2 49718465 134 + 182113224 I a score=268125.000000 s hg38.chr2_GL582966v2_alt 40308 122 + 96131 TTTGTTCATC-CAGTTCAAAACCTGTGAGGCCAGCAGACATG-GTTCAGTAACTAGCTAAATCTGTAGCCTCTAGTCTGATTTGGGGCTTTGTGGAACTTTGGGACCAC-CACAATTGGAACACA s panTro4.chr2B 153153084 122 + 247518478 TTTGTTCATC-CAGTTCAAAACCTGTGAGGCCAGGAGGCATG-GTTCAGTAACTAGCTAAATCTGTAGCCTCTAGTCTGATTTGGGGCTTTGTGGAACTTTGGGACCAC-CACAATTGGAACACA i panTro4.chr2B C 0 C 0 s rheMac3.chr12 11923399 122 + 106825570 TTTGTTCATC-CAGCTCAAAACCCGTGAGGCCAGCAGGCATG-GTTCAGTAACTAGCTAAATCTGTAGCCTCTAGTCTGATTTGGGGCTTTGTGGAACTTTGGGACTGC-CACAATTGGAACACA i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37627620 122 + 132586672 TTTGTTCATC-CAGCTCAAAACCCGTGAGGCCAGCAGGCATG-GTTCAGTAACTAGCTAAATCTGTAGCCTCTAGTCTGATTTGGGGCTTTGTGGAACTTTGGGACTGC-CACAATTGGAACACA i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11284816 122 + 104110932 TTTGTTCATC-CAGCTCAAAACCCGTGAGGCCAGCAGGCATG-GTTCAGTAACTAGCTAAATCTGTAGCCTCTAGTCTGATTTGGGGCTTTGTGGAACTTTGGGACCGC-CACAATTGGAACACA i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34382230 122 + 128595539 TTTGTTCATC-CAGCTCAAAACCCGTGAGGCCAGCAGGCATG-GTTCAGCAACTAGCTAAATCTGTAGCCTCTAGTCTGATTTGGGGCTTTGTGGAACTTTGGGACCGC-CATAATTGGAACACA i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87869739 122 - 158406734 TTTGTTCTCC-CAGTTCAAAACCTGTGAGGCCAGCAGGCATG-GCTCAGTAACTAGCTAAATCTGTAGCCTCTAGTCTGATTTGGGGCTTTGTGGAACTTGGGGACTGC-CACAATTGGAACACA i calJac3.chr6 C 0 C 0 s canFam3.chr19 50628088 125 + 53741614 TTTGTTCTCCACCATTTAAAACCTGCCAGGCCAGCAGGCTTGCTTTCCCTAACTGGCTGAATCTGTAGCCGGGAGTCTGATCCGGGGCTTTGTGGGACTGTGTGGCCTCGCGTAGCTGGCACACA i canFam3.chr19 C 0 C 0 e nomLeu3.chr20 82309515 2145 - 85365473 M e ponAbe2.chr2b 38359163 654 + 135000294 I e mm10.chr2 49718465 134 + 182113224 I a score=74592.000000 s hg38.chr2_GL582966v2_alt 40430 28 + 96131 ATTTGCTCTTTTAGCATTAAAT-CTTCGA s panTro4.chr2B 153153206 28 + 247518478 ATTTGCTCTTTTAGCATTAAAT-CTTCGA i panTro4.chr2B C 0 C 0 s nomLeu3.chr20 82311660 28 - 85365473 ATTTGCTCTTTTAGCATCAAAT-CTTCGA i nomLeu3.chr20 M 2145 C 0 s rheMac3.chr12 11923521 28 + 106825570 ATTTGCTTTTTTAGCATTAAAT-TTTCGA i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37627742 28 + 132586672 ATTTGCTTTTTTAGCATTAAAT-TTTCGA i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11284938 28 + 104110932 ATTTGCTTTTTTAGCATTAAAT-TTTCGA i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34382352 28 + 128595539 ATTTGCTTTTTTAGCATTAAAT-TTTCAA i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87869861 28 - 158406734 ATTTGTTCTTTTAGCATTAAAC-CTTCAA i calJac3.chr6 C 0 C 0 s canFam3.chr19 50628213 29 + 53741614 ATTTGCTCTCCTAGCATTAGAGACGTCGA i canFam3.chr19 C 0 C 0 e ponAbe2.chr2b 38359163 654 + 135000294 I e mm10.chr2 49718465 134 + 182113224 I a score=431281.000000 s hg38.chr2_GL582966v2_alt 40458 157 + 96131 AGATGCTGGCTCCCTT----CTTAGATCCATGATTATAATGGACTCTCAGAAATTAGCATTTCATTGGAGC-GATCTAATTTACTAGGCCCTCTGCTTGCTTTTGAGAAC---ACAACCAAACTCTGTAATAGAAATACC---GTCTGTCTACTAAG----AGAATGTTGTG s panTro4.chr2B 153153234 157 + 247518478 AGATGCTGGCTCCCTT----CTTAGATCCATGATTATAATGGACTCTCAGAAATTAGCATTTCATTGGAGC-GATCTAATTTACTAGGCCCTCTGCTTGCTTTTGAGAAC---ACAACCAAACTCTGTAATAGAAATACC---GTCTGTCTACTAAG----AGAATGTTGTG i panTro4.chr2B C 0 C 0 s nomLeu3.chr20 82311688 156 - 85365473 ATATGCTGGCCCCCTT----CTCAGATCCATGATTATAATGGA--CTCAGAAATTAGCATTTCATTGGAGC-GATCTAATTTATTAGGCCCTCTGCTTGCTTTTGAGAACACAACAACCAAA--CTGTAATAGAAATACC---GTCTGTCCACTAAG----AGAATGTTGTG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11923549 160 + 106825570 AGATGCTGGCCCCCTT----CTCAGATCCATGATTATAATGGACTCTCAGAAATTAACATTTCATTGGAAA-GATCTAATTTACTAGGCCCTCTGCTTGCTTTTGAGAAC---ACAACCAAACCCTGTAATAGAAATACCTTAGTCTGTCCACTAAG----AGAATGTTGTG i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37627770 160 + 132586672 AGATGCTGGCCCCCTT----CTCAGATCCATGATTATAATGGACTCTCAGAAATTAACATTTCATTGGAAA-GATCTAATTTACTAGGCCCTCTGCTTGCTTTTGAGAAC---ACAACCAAACCCTGTAATAGAAATACCTTAGTCTGTCCACTAAG----AGAATGTTGTG i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11284966 160 + 104110932 AGATGCTGGCCCCCTT----CTCAGATCCATGATTATAACGGACTCTCAGGAATTAACATTTCATTGGAAA-GATCTAATTTACTAGGCCCTCTGCTTGCTTTTGAGAAC---ACAACCAAACCCTGTAATAGAAATACCTTAGTCTGTCCACTAAG----AGAATGTTGTG i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34382380 160 + 128595539 AGATGCTGGCCCCCTT----CTCAGATCCATGATTATAATGGACTCTCAGAAATTAACATTTCATTGGAGA-GATCTAATTTACTAGGCCCTCTGCTTGCTTTTGAGAAC---ACAACCAAACCCTGTAATAGAAATACCTTAGTCTGTCCACTAAG----AGAATGTTGTG i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87869889 157 - 158406734 AGATGCTGGCTCCCTT----CTTGAATTTATGATTATAATGGTCTCTCAGAAATTAGCATTTCATTGGAGA-TACCTAATTTACTAGACCCTCTGCTTGCTTTTGAGAGC---ACAACCAAACTCTGTAATAGAAATACC---GTCTGTCTACTAAG----AGAATGTTGTG i calJac3.chr6 C 0 C 0 s mm10.chr2 49718599 145 + 182113224 AGGTGCTGGTCCCCTC----TTAGGCTTCATAAGTGT---GAGCTCACAGGAATTAGCATTTCAGTCAAGA-TGTCTAATTTGTTATGTGTTCTTCCTTC-CTTGAGAGT---GCAGCTAAAC----TAATAGAAATACC---GACTG----CTCAG----CAAACCACGTG i mm10.chr2 I 134 C 0 s canFam3.chr19 50628242 155 + 53741614 GCGTGCCGCCCCTCCCCCGGCCTGGATTCAGGCCTGCAGTAGGAGCTCAGAAGTTAGCGTTTCGTTGGAGACCCCCTGGTTTGTCAGGCTCGCTTCT----CTTGAGAGC---ACAGCCAGACTCTG---TAGAAA-------GCCTGACCGCTAGGAGCTAGAATGGTGGG i canFam3.chr19 C 0 C 0 e ponAbe2.chr2b 38359163 654 + 135000294 I a score=3557607.000000 s hg38.chr2_GL582966v2_alt 40615 835 + 96131 GCCTGTTCAGGTGGTCATGAATGTAA-GGAGGATGCAGAGTCCCAGGTGACCAGTTTATTAGAAAATCGCTCTAGAAGGGATTAGAGGATGTTTTAAGCTGCTTACAGTGTTTTTAGGAATGAGGGTGAAAGATGCTATTTGCATGCAAAATAATCTCATAAAAGAATGA----------------TTTTTTTTT-TA-ACATCACATTTATATAATGACATCTTGTAGCCAGCTGCTCTCACCCATCTGGCAACTTAAAGATTTCCTTTTAGTTTCTTTGATACAGAAATTACCTACCATTAGGTCTGCCACTGGGCCTATTTAATTGGAATTAAAAGAAAGCACCTCGTTTGCCAGATCTGCTGTGGTTCCTGGCGGAAGCTGTGAGTAACCAGCAAATCTCTGCTCT-GGAGTTACTGAGAGAATGCAATTACCTTTCTGTGTTCTCCTGAGGCTTTAGGAACTCAACTTATGAAAAGGATAACTAGCTTGTTGCTATTTCATGTGTGAAGTTTTAATGAATTACTGGCAGTCTAATGGTTTTCTTTCTTTA-----------------AAAAAAA-ACCCAA----------AAACCTATTTTAGAAATTT----TAATAGCCCTAATGAGAATTTTTG---------ATTAGTGTGTCATTCTCATCTGTTGCCGTTGATGGATT-----------------TCTATTTTTTGTAGAAATGTTATTTACGCCCTCTGGGAGTTTTTATTTTATAATTAGAATGCTCTGTAAGCCTTATAGGTATGCTTC-AGT-GAATGCTCCTATGTAAACACAAATCTTTTTAGTCCTTAAAGGTAATTACATCTGACGATAGTAAATGCCAGGATGCTTATTTAAAGAAGGGGAAGGTTTCCAgtgtgtgtgt-gtgt s panTro4.chr2B 153153391 832 + 247518478 GCCTGTTCAGGTGGTCATGAATGTAA-GGAGGATGCAGAGTCCCAGGTGACCAGTTTATTAGAAAATCGCTCTAGAAGGGATTAGAGGATGTTTTAAGCTGCTTACAGTGTTTTTAGGAATGAGGGTGAAAGATGCTATTTGCATGCAAAATAATCTCATAAAAGAATGA----------------TTTTTTTTT--A-ACATCACATTTATATAATGACATCTTGTAGCCAGCTGCTCTCACCCATCTGGCAACTTAAAGATTTCCTTTTAGTTTCTTTGATACAGAAATTACCTACCATTAGGTCTGCCACTGGGCCTATTTAATTGGTATTAAAAGAAAGCACCTCATTTGCCAGATCTGCTGTGGTTTCTGGCGGAAGCTGTGAGTAACCAGCAAATCTCTGCTCC-GGAGTTACTGAGAGAATGCAATTACCTTTCTGTGTTCTCCTGAGGCTTTAGGAACTCAACTTATGAAAAGGATAACTAGCTTGTTGCTATTTCATGTGTGAAGTTTTAATGAATTACTGGCAGTCTAATGGTTTTCTTTCTTTA-----------------AAAAAAAGACCCAA----------AAACCTATTTTAGAAATTT----TAATAGCCCTAATGAGAATTTTTG---------ATTAGTGTGTCATTCTCATCTGTTGCCGTTGATGGATT-----------------TCTATTTTTTGTAGAAATGTTATTTACGCCCTCTGGGAGTTTTTATTTTATAATTAGAATGCTCTGTAAGCCTTATAGGTATGCTTC-AGT-GAATGCTCCTATGTAAACACAAATCTTTTTAGTCCTTAAAGGTAATTACATCTGACAATAGTAAATGCCAGGATGCTTATTTAAAGAAGGGGAAGGTTTCCA---tgtgtgt-gtgt i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38359817 830 + 135000294 GCCTGTTCAGGT-GTCATGATTGTAA--GAGGATGCAGAGTCCCAGGTGACCAG-TTATTAGAAAATCGCTGTAGAA-GGATTAGA-GATGTTTT-AGCTGC-TACAGTGTTTTTAGGAATGAGGGTGAAAGATGCTATTTGCATGCAAAATAATCTCATAAAGAAATGA----------------TTTTTTTTTTTA-ACATCACATTTATATAATGACATCTTGTAGCCAGCTGCTCTCACCCATCTGGCAACTTAAAGATTTCCTTTTAGTTTCTTTGATATAGAAATTACCTACCATTAGGTCTGCCACTGGGCCTGTTTAATTGGTAttaaaagaaagcacctcgtttgccAGATCTGCTGTGGTTTCTGGCGGAAGCTGTGAGTAACCAGCAAATCTCTGCTCC-GGAGTTACTGAGAGAATGCAATTACCTTTCTGTGTTCTCCTGAGGCTTTAGGAACTCAACTTATGAAAAGGATAACTAGCTTGTTGCTATTTCATGTGTGAAGTTTTAATGAATTACTGGCAGTCTAATGGTTTTCTTTCTTTA-----------------AAAAAAAAACCCAA----------AAACCTATTTTAGAAATTT----TAATAGACCTAATGAGAATTTTTG---------ATTAGTGTGTCATTCTCATCTGTTGCCGTTGATGGATT-----------------TCTATTTTTTGTAGAAATGTTATTTACGCCCTCTGGGAGTTTTTATTTTATAATTAGAATGCTCTGTAAGCCTTATAGGTATGCTTC-AGT-GAATGCTCCTATGTAAACACAAATCTTTTTAGTCCTTAAAGGTAATTACATCTGACAATAGTAAATGCCAGGATGCTTATTTAAAGAAGGGGAAGGTTTCCAgtgtgtgtgt-gtgt i ponAbe2.chr2b I 654 C 0 s nomLeu3.chr20 82311844 833 - 85365473 GCCTGTTCAGGTGGTCATGAATGTAA-GGAGGATGCAGAGTCCCAGGTGACCAGTTTGTTAGAAAGTCACTCTAGAAGGGATTAGAGGATGGTTTAAGCTGCTTACCGTGTTTTTAGGAAAGAGGGTGAAAGATGCTATTTGTATGCAAAATAATCTCATAAAGGAATGA----------------TTTTTTTTT-TA-ACATCACATTTATATAGTGACATCTTGTAGCCAGCTGCTCTCACCCATCTGGCAACTTAAAGATTTCCTTTTAGTTTCTTTGATATAGAAATTACCTACCATTAGGTCTGCCACTGGGCCTATTTAATTGGTATTAAAAGAAAGCACCTCGTTTGCCAGATCTGCTGTGGTTTCTGGCGGAAGCTGTGAGTAACCAGCAAATCTCTGCTCC-AGAGTTACTGAGAGAATGCAATTACCTTTCTGTGTT---CTGAGGCTTTAGGAACTCAACTTATGAAAAGGATAACTAGCTTGTTGCTATTTCATGTGTGAAGTTTTAATGAATTACTGGCAGTCTAATGGTTTTCTTTCTTTA-----------------AAAAAAAAGCCCAA----------AAACCTATTTTAGAAATTT----TAATAGCCCTAATGAGAATTTTTG---------ATTAGTGTGTCATTCTCATCTGTTGCCGTTGATGGATT-----------------TCTATTTTTTGTAGAAATGTTATTTACGCCCTCTGGGAGTTTTTATTTTATAATTAGAATGCTCTGTAAGCCTTATAGGTATGCTTC-AGT-GAATGCTCCCATGTAAACACAAGTCTTTTTAGTCCTTAAAGGTAATTACATCTGACAATAGTAAATGCCAGGATGCTTATTTAAAGAAGGGGAAGGTTTCCAGTGTGTGTGT-GTGT i nomLeu3.chr20 C 0 I 12 s rheMac3.chr12 11923709 831 + 106825570 GCCTGTTCAGGAGGTCATGAATGTAA-GGAGGATGCAGAGTCCCAGGTGACCAGTTTATTAGAAAATCGCTCTGGGAGGGATTAGAGGATGTTTTAAGCTGCTTACAGTATTTTTAGGAATGAGGGTGAAAGATGCTATTTGCATGCAAAATAATCTCATCAAGGAA-TT----------------TTTTTTTTTTTA-ACATCACATTTATATAATGACATCTTGTAGCCAGCTGCTCTCGCCCATCTGGCAACTTAAAGATTTCCTTTTAGTTTCTTTGATATAGAAATTACCTACCATTAGGTCTGCCACTGGGCCTATTTAATTGGTATTAAAAGAAAGCATCTCGTTTGCCAGATCTGCTGTGGTTTCTGGCGGAAGCTGTGAGTGACCAGCAAA--TCTGCTCC-AGAGTTACTGAGAGAATGCAATTACCTTTCTGTGTTCTCCTGAGGCTTTAGGAACTCAACTTATGAAAAGGATAACTAGCTTGTTGCTATTTCATGTGTGAAATTTTAATGAATTACTGGCAGTCTAATGGTTTTCTTTCTTTT-----------------AAAAAAAACCCCAA----------AAACCTATTTTAGAAATTT----TAATAGCCCTAATGAGAATTTTTG---------ATTAGTGTGTCATTCTCATCTGTTGCCGTTGATGGATT-----------------TCTGTTTTTTGTAGAGATGTTATTTACGCCCTCTGGGAGTTTTTATTTTATAATTAGAATGCTCTGTAAGCCTTACAGGTATGCTTC-AGT-GAATGCTCCTATGTAAACACAAATCTTTTTAGTCCTTAAAGGTAATTATATCTGACAATGGTAAATGCCAGGATGCTTATTTAAAGAAGGGGAAGGTTTCCAGTGTGTGTGTG---- i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37627930 829 + 132586672 GCCTGTTCAGGAGGTCATGAATGTAA-GGAGGATGCAGAGTCCCAGGTGACCAGTTTATTAGAAAATCGCTCTGGGAGGGATTAGAGGATGTTTTAAGCTGCTTACAGTATTTTTAGGAATGAGGGTGAAAGATGCTATTTGCATGCAAAATAATCTCATCAAGGAATTT----------------TTTTTTTTTTTA-ACATCACATTTATATAATGACATCTTGTAGCCAGCTGCTCTCACCCATCTGGCAACTTAAAGATTTCCTTTTAGTTTCTTTGATATAGAAATTACCTACCATTAGGTCTGCCACTGGGCCTATTTAATTGGTATTAAAAGAAAGCATCTCGTTTGCCAGATCTGCTGTGGTTTCTGGCGGAAGCTGTGAGTGACCAGCAAA--TCTGCTCC-AGAGTTACTGAGAGAATGCAATTACCTTTCTGTGTTCTCCTGAGGCTTTAGGAACTCAACTTATGAAAAGGATAACTAGCTTGTTGCTATTTCATGTGTGAAATTTTAATGAATTACTGGCAGTCTAATGGTTTTCTTTCTTTT------------------AAAAAAACCCCAA----------AAACCTATTTTAGAAATTT----TAATAGCCCTAATGAGAATTTTTG---------ATTAGTGTGTCATTCTCATCTGTTGCCGTTGATGGATT-----------------TCTGTTTTTTGTAGAGATGTTATTTACGCCCTCTGGGAGTTTTTATTTTATAATTAGAATGCTCTGTAAGCCTTACAGGTATGCTTC-AGT-GAATGCTCCTATGTAAACACAAATCTTTTTAGTCCTTAAAGGTAATTATATCTGACAATGGTAAATG-CAGGATGCTTATTTAAAGAAGGGGAAGGTTTCCAGTGTGTGTGT----- i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11285126 827 + 104110932 GCCTGTTCAGGAGGTCATGAATGTAA-GGAGGATGCAGAGTCCCAGGTGACCAGTTTATTAGAAAATTGCTGTAGGAGGGATTAGAGGATGTTTTAAGCTGCTTACAGTATTTTTAGGAATGAGGGTGAAAGATGCTATTTGCATGCAAAATAATCTCatcaaggaa-------------------ttttttttttta-acatcacatTTATATAATGACATCTTGTAGCCAGCTGCTCTCACCCATCTGGCAACTTAAAGATTTCCTTTTAGTTTCTTTGATATAGAAATTACCTACCATTAGGTCTGCCACTGGGCCTATTTAATTGGTATTAAAAGAAAGCATCTCGTTTGCCAGATCTGCTGTGGTTTCTGGCGGAAGCTGTGAGTGACCAGCAAA--TCTGCTCC-AGAGTTACTGAGAGAATGCAATTACCTTTCTGTGTTCTCCTGAGGCTTTAGGAACTCAACTTATGAAAAGGATAACTAGCTTGTTGCTATTTCATGTgtgaaattttaatgaattacTGGCAGTctaatggttttctttcttta----------------aaaaaaaaaacccaa----------aaacctattttagaaattt----taatagCCCTAATGAGAATTTTTG---------ATTAGTGTGTCATTCTCATCTGTTGCCGTTGAtggatt-----------------tctgttttttgtagagatgttatTTACGCCCTCtgggagtttttattttataattagaatGCTCTGTAAGCCTTACAGGTATGCTTC-AGT-GAATGCTCCTATGTAAACACAAATCTTTTTAGTCCTTAAAGGTAATTATATCTGACAATGGTAAATGCCAGGATGCTTATTTAAAGAAGGGGAAGGTTTCCAGTGTGTTT------- i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34382540 832 + 128595539 GCCTGTTCAGGAGGTCATGAATGTAA-GGAGGATGCAGAGTCCCAGGTGACCAGTTTATTAGAAAATCGCTCTAGGAGGGATTAGAGGATGTTTTAAGCTGCTTACAGTATTTTTAGGAATGAGGGTGAAAGATGCTATTTGCATGCAAAATAATCTCATCAAGGAATGT----------------TTTTTTTTTTTA-ACATCACATTTATATAATGACATCTTGTAGCCAGCTGCTCTCACCCATCTGGCAACTTAAAGATTTCCTTTTAGTTTCTTTGATATAGAAATTACCTACCATTAGGTCTGCCACTGGGCCTATTTAATTGGTATTAAAAGAAAGCATCTCGTTTGCCAGATCTGCTGTGGTTTCTGGCGGAAGCTGTGAGTGACCAGCAAA--TCTGCTCC-AGAGTTACTGAGAGAATGCAATTACCTTTCTGTGTTCTCCTGAGGCTTTAGGAACTCAACTTATGAAAAGGATAACTAGCTTGTTGCTATTTCATGTGTGAAATTTTAATGAATTACTGGCAGTCTAATGGTTTTCTTTCTTTA----------------AAAAAAAAACCCCAA----------AAACCTATTTTAGAAATTT----TAATAGCCCTAATGAGAATTTTTG---------ATTAGTGTGTCATTCTCATCTGTTGCCGTTGATGGATT-----------------TCTGTTTTTTGTAGAGATGTTATTTACGCCCTCTGGGAGTTTTTATTTTATAATTAGAATGCTCTGTAAGCCTTACAGGTATGCTTC-AGT-GAATGCTCCTATGTAAACACAAATCTTTTTAGTCCTTAAAGGTAATTATATCTGACAATGGTAAATGCCAGGATGCTTATTTAAAGAAGGGGAAGGTTTCCAGTCTGTGTGT----- i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87870046 825 - 158406734 GCCTGTTCAG---GTCATGAGTGTAA-GGAGGATGCAGAGTCCCAGGTGACCAGTTTATTAGAAAGTCGCCCTAGAAGGGATTAGAGGATGTTTTAAGCTGCTTATCGTATTTTTAGGAATGAGGGTGAAAGATGCTATTTTCATGCAAAATAATCTCATAAGGGAATGA----------------AATTTTTTTTTACACATCACATTTATATAATGACATCTTGTAGCCAGCTGCTGTCACCCATCTGGCAACTTAAAGATTTCCTTTTAGTGTCTTTGATATAGAAATTACCTACCATTAGGTCTGCCACTGGGCCTATTTAATTGGTATTAAAAGAAAGCA-CTCGTTTGCCAGATTTGCTGTGGTTTCTGGCGGAAGCTGTGAGTGACCAGCAAATCTCTGCTCC-GGAGTTACTGAGAGAATGCAATTACCTTTCTATGTTCTCCTGAGGCTTTAGGAACTCACCGTATGAAAAGGATAACTAGCTTGTTGCTATTTCATGTGTGAAATTTTAATGAATTACTGGCAGTCTAATGGTTTTCTTTCTTTA-------------------AAAAAACCCCCA----------AAACCTATTTTAGAAATTT----TAATAGCCCTAATGAGAATTTTTG---------ATTAGGCTGTCATTCTCATCTATTGCAGTTGATGGATT-----------------TCTATTTTTTGTAGAAATGTTATTTACGCCCTCTGGGAGTTTTTATTTTATAATTAGAATGCTCTGTAAGCCTTATAGGTATGCTTC-AGT-GAATGCTTCTATGTAAACACAAATCTTTTTAGTCCTTAAAGGTAATTACATCTGACAATAGTAAATGCCGGGATGCTTATTTAAA------CAAGGTTTCGAGTGTGTGTGG-GGG- i calJac3.chr6 C 0 C 0 s mm10.chr2 49718744 881 + 182113224 GCCTATTCAAAAGGTCATGAATGTAAAGAAGGCCACAGAAT-CTGGTTAGCCTGTGCATTAGAAAATTGCTGTAGACAGGATTAGGGGCTG-CAGAGGCTGCTTACAATATTTTTAGGAA-GAGTGTGAAGGATGCTATTTGTATGCAAAGCAGCCTCATAAAGGAATGAtttctttcttttttttttttttttttAA-ACTTCACATTTATATAATGACGTCTTGTTGCCAGCTGTTCCTGCCCATCTGGCAACTTAAAGATCTCCTTTTAGTGTCTTCGATACAGAAATTGCTTAGTGATAGGTTTGCCACTAGGCCCGTTTAATTGGTATTAAAACAAAACACCTCGTTTGCCAGATCTACAGTGGTTTCTGGTGGAAGCTGTGAGTGACCTGCAAATCCCTGCCCT-GGAGTGGCTGAGAAAATGCAATTACCTCTCTGTGTTCTCCAGAGGCTTTGGGGACTCAACTTAGGAAAAGAATTACTAGCTTGTTGCTATTTCATGTGTGAAATTTTAATGATTTCCTGGCAGTCTAATAGTATTCCTAAAGAA-----------------AAAAAAAGTCCAAATAAATCCATTAAATCCATTTTAGAATTTTTAACTAATAGACCTAATGAGGGTTTTTGTTCTTTTTTTTTAGTCTGCCATTCTCATCCACTGAAATTGATAGATTCTCCCCTCCACCCCCAACCCCCCCTTTTCAGAAATGTTATTTATGCTCTCTGGGGATTTTCGTTTTATAATTAGAAGGTTCTGCAAGCCTTATAGGTATGCTCT-AACAGAATGCTCCTGTGTAAACACAGATCTTTTTAGTCCTTAAAGGTAATTACAGCTGACAATAGTAAATGCCAGGATGCTTATTTAAGGACAG-GAGGCCTTTCAGCGT----------- i mm10.chr2 C 0 C 0 s canFam3.chr19 50628397 867 + 53741614 GGCTGCCCAAGGGGTCAGGACTGTGA-AGAGATTTCGGCGTCCTGGGTGACCAGTTTATTAGAAAATTACTCTAGAAGGGATTAGAAAATGTCTTAAGCTGCTTACAATATTTTTAGGAACTAGGGTGAGAGATGCTATTTGTGTGCAAAATAATCCCATAAAGGAATGACTTTTTTT--------TTTTTTTTTTAA-ACCTCACATTTATATAATGACATCTTGTAGCCAGCTGCTCTTACCCATCTGGCAACTTAAAGATTTCCTTTTAGTTTCTTTGATATAGAAATTACCTGCCATTAGGTCTGCCACTGGGCCTGTTTAATTGGTATTAAAAGAAAGAGCCTCCTTTGCCAGATCTGCTGTGGTTTCTGACGGAAGCTGTGAGTGACCAGCAAATCTCTGCCCCTGGAGTTGCAGAGAGAATGCAATTACCTTTCTATGTTCTCCAGAGGCTTTAGGGACTCAATTTATGAAAAGGATAACTAGCTCGTTGCTATTTCATGTGTGAAATTTTAATGAATTACTGGCAGTCTAATGGTTTTCTTCTTCTTCTTTTTTTTTGAAAAAACAAGAAAAACCAAA----------AAGCCTGTTTTAGAATTTTTAACTAATAGCCCTAACGAGTATTTTTG---------ATTAGTCTGCCATCCTTGTTTATTGCAATTGATGGATT-----------------TTTACTTTTTGTAGAAATGCTATTTATGCCCTCGGGAGGTTTTCGTTTTATAATTAAAATGCTCTGCAAACCTTGTAGGTGTGCTCCTAGT-GAATGCTCCTGTGTACACACAAATCTTTTTAGTCCTTAAAGGTAATTACATCTGACAATAGGAAATGCCAGAATGCTTATTTAAAGAAAGGAAAGGTTTCTAGTGGGAGTGG-GGG- i canFam3.chr19 C 0 C 0 a score=-222.000000 s hg38.chr2_GL582966v2_alt 41450 26 + 96131 gtgtgtgtgtgtgtgtgtgtgtgtat s panTro4.chr2B 153154223 24 + 247518478 gtgtgtgtgtgtgtgtgtgtgtgt-- i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38360647 24 + 135000294 gtgtgtgtgtgtgtgtgtgtgtgt-- i ponAbe2.chr2b C 0 C 0 s calJac3.chr6 87870871 2 - 158406734 ------------------------AA i calJac3.chr6 C 0 C 0 s canFam3.chr19 50629264 10 + 53741614 --------------GAGCTTTCAT-- i canFam3.chr19 C 0 C 0 e nomLeu3.chr20 82312677 12 - 85365473 I e macFas5.chr12 37628759 0 + 132586672 C e mm10.chr2 49719625 0 + 182113224 C e chlSab2.chr10 34383372 0 + 128595539 C e papAnu2.chr12 11285953 0 + 104110932 C e rheMac3.chr12 11924540 0 + 106825570 C a score=740276.000000 s hg38.chr2_GL582966v2_alt 41476 204 + 96131 gtgtgtgGGGAGGCCTTTCAGATGCTTTACAATATTATGAGCTCTTTTCCTATAGACAGCAGGTAT-AAGCCTCCGGGGCTAAACTAA------GAGAAATCTGCTTTTAATGC---------------------A-AAGAGGG-----AGACTCAAAATAGATGCTAATCTTCCTTTGGTGGTCTTTTTCTCCTTCTCCCACCATC----------------------------------------------------------------------------------AGAGTTCAGGGCGTTATTT---CTCTAGGGTCTG s panTro4.chr2B 153154247 196 + 247518478 --------gGAGGCCTTTCAGATGCTTTACAATATTATGAGCTCTTTTCCTATAGACAGCAGGTAT-AAGCCTCCGGGGCTAAACTAA------GAGAAATCTGCTTTTAATGC---------------------A-AAGAGGG-----AGACTCAAAATAGATGCTAATCTTCCTTTGGTGGTCTTTTTCTCCTTCTCCCACCATC----------------------------------------------------------------------------------AGGGTTCAGGGCGTTATTT---CTCTAGGGTCTG i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38360671 204 + 135000294 gtatgtAGGGAGGTCTTTCAGATGCTTTACAATATTATGAGCTCTTTTCCTATAGACAGCAGGTAT-AAGCCTCAGGGGCTAAACTAA------GAGAAATCTCCTTTTAATGC---------------------A-AAGAGGG-----AGACTCAAAATAGATGCTAATCTTCATTTGGTGGTCTTTTTCTCCTTCTCCCACCATC----------------------------------------------------------------------------------AGAGTTCAGGGCGTTATCT---CTCTAGGGTCTG i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82312689 204 - 85365473 gcggggggggaggCCTTTCAGATGCTTTACGATATTATGAGCTCTTTTCCTATAGACAGCAGGTAT-AAGCCTCAGGGGCTAAACTAA------GAGAAATCTGCTTTTAATGC---------------------T-AAGAGGG-----AGACTAAAAATAGATGCTAATCTTCCTTTGGTGGTCCTTTTCTCCTTCTCCCACCATC----------------------------------------------------------------------------------AGAGTTCAGGGCGTTATTT---CTCTAGGGTCTG i nomLeu3.chr20 I 12 C 0 s rheMac3.chr12 11924540 202 + 106825570 --GGGGGGGGAGGCCTTTCAGATGCTTTACAATATTATGAGCTCTTTTCCTATAGACAGCAGGTAT-AAGCCTCAGGGGCTAAACTAA------GAGAAATCTGCTTTTAATGC---------------------A-AAGAGGG-----AGACTAAAAATAGATGCTAATCTTCCTTTGGTGGTCTTTTTCTCCTTCTCCCACCATC----------------------------------------------------------------------------------AGAGTTCAGGGCATTATTT---CTCTACAGTCTG i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37628759 200 + 132586672 ----GGGGGGAGGCCTTTCAGATGCTTTACAATATTATGAGCTCTTTTCCTATAGACAGCAGGTAT-AAGCCTCAGGGGCTAAACTAA------GAGAAATCTGCTTTTAATGC---------------------A-AAGAGGG-----AGACTAAAAATAGATGCTAATCTTCCTTTGGTGGTCTTTTTCTCCTTCTCCCACCATC----------------------------------------------------------------------------------AGAGTTCAGGGCATTGTTT---CTCTACAGTCTG i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11285953 200 + 104110932 ----GGGGGGAGGCCTTTCAGATGCTTTACAATATTATGAGCTCTTTTCCTATAGACAGCAGGTAT-AAGCCTCAGGGGCTAAACTAA------GAGAAATCTGCTTTTAATGC---------------------A-AAGAGGG-----AGACTAAAAATAGATGCTAATCTTCCTTTGGtggtctttttctccttctcccaccATC----------------------------------------------------------------------------------AGAGTTCAGGGCATTATTT---CTCTAGAGTCTG i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34383372 200 + 128595539 ----GGGGGGAGGCCTTTCAGATGCTTTACAATATTATGAGCTCTTTTCCTATAGACAGCAGGTAT-AAGCCTCAGGGTCTAAACTAA------GAGAAATCTGCTTTTAATGC---------------------A-AAGAGGG-----AGACTAAAAATAGATGCTAATCTTCCTTTGGTGGTCTTTTTCTCCTTCTCCCACCATC----------------------------------------------------------------------------------AGAGTTCAGGGCATTATTT---CTCTAGAGTCTG i chlSab2.chr10 C 0 I 230 s calJac3.chr6 87870873 225 - 158406734 GGGTGGGGGGAAGCCTTTCAGATGTTTTACAATATTATGAGTTCTTTTCCTATAGACAGCAGGTAT-AAGCCTCAGGGGCTAAACTTA------GAGAAATCTGCTTTTAATGCAGATTTGTAAAATAGAAATCTA-AAATAGA-----AAACTAAAAATAGATGCTAACCTTCCTTTGGTGGTCTTTTTCTCCTTCTCCCACTATC----------------------------------------------------------------------------------AGCATTCAGGGTGTTATTT---CTCTAGGTTCTG i calJac3.chr6 C 0 C 0 s mm10.chr2 49719625 273 + 182113224 -------AGGACAC----CAGACATTTTCCAAGGTTAGAAGCTCTT---CTTTAGGCAGCAGATAC-AAGCCTCGTGGGCTGGACTAA------AAGAAATCTGCTTTTAATAA---------------------ACCAGAGCG-----AAAATAAAAAACCCTGCTAATCTCCACTTGGTGGtctctctctctctctctctctctctctctctctctctctctctctccctccctccctccctccctccctccctccctccctccctccctccctcccctcccCCTGGTTGATTGAGAGCATTATTC---CTCCAGGGTTGG i mm10.chr2 C 0 C 0 s canFam3.chr19 50629274 210 + 53741614 ---TGTAGAAAA-----TCAGATGCTTTACGGTATTATAAGCTCTTTCCCTATAGACAGCTGGTATAAAGCCTCGGGGAATGAACTAAGAGAAGGAGAAATTTGCTTTAAATGC---------------------A-AAAAGGGGAATCAAAATAAAAATAGATGCTCATCTTCATTTGGTGGTCCTTTTC-CGGTCTCTCCCCACC----------------------------------------------------------------------------------AGATTTTAGGACATTTTTTTTCCTCCGGGGTTTG i canFam3.chr19 C 0 C 0 a score=1258749.000000 s hg38.chr2_GL582966v2_alt 41680 296 + 96131 TTTGCAGCTGTCTTCCTTGTTAGAATCAGTTATTCCATAATCACCATGTGGGGGCTTCTCCAGAGAATTGGTCCACTGCAGTGCAGGGAATATTCTCCATTAACGTGGTGAGATTGCCATGGAGACAGATAACCTAGTGTCAGGTCTTGCCTAGTGTTGGGAATTTACAATCCCCAGACGTGTTTGTGAGCTGGACAGTGTAGTTACCA-GGACGCTTCTGGAAGTCATTTTCTCGGTCCTTTGAAGAGTAGTGGTGTT--GGAAAACCTGCCCTTGGTTCCTCTCTGGGCAGGAGCTG s panTro4.chr2B 153154443 296 + 247518478 TTTGCAGCTGTCTTCCTTGTTAGAATCAGTTATTCCATAATCACCATGTGGGGGCTTCTCCAGAGAATTGGTCCACTGCAGTGCAGGGAATATTCTCCATTAATGTGGTGAGATTGCCATGGAGACAGATAACCTAGTGTCAGGTCTTGCCTAGTGTTGGGAATTTACAATCCCCAGACGTGTTTGTGAGCTGGACAGTGTAGTTACCA-GGACGCTTCTGGAAGTCATTTTCTCGGTCCTTTGAAGGGTAGCGGTGTT--GGAAAACCTGCCCTTGGTTCCTCTCTGGGCAGGAGCTG i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38360875 296 + 135000294 TTTGCAGCTGTTTTCCTTGTTAGAATCAGTTATTCCATAATCACCATGTGGGGGCTTCTCCAGAGACTCGGTCCACTGCAGTGCAGGGAATATTCTCCATTAACATGGTGAGATTGCCATGGAGACAGATAACCTAGTGTCAGGTCTTGCCTAGTGCTGGGAATTTACAATCCCCAGACGTGTTCGTGAGCTGGACAGTGTAGTTACCA-GGACGCTTCTGGAAGTCATTTTCTCGGTCCTTTGAAGGGCAGTGGTGTT--GGAAAACCAGCCCTTGGTTCCTCTCTGGGCAGGAGTTG i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82312893 296 - 85365473 TTTGCAGCTGTCTCCCTTGTTAGAATCAGTTATTCCGTAATCACCGTGTGGGGGCTTCTCCAGAGACTCGGTCCACTGCTGTGCAGGGAATATTCTCCATTAACGTGGTGAGATTGCCATGGAGACAGATAACCTAGTGTCAGGTCTTGCCTAGTGTTGGGAATTTACAATCCCCAGACGTGTTTGTGAGCTGGACAGTGTAGTTACCA-GGACGCTTCTGGAAGTCATTTTCTCGGTCCTTTGAAGGGCAGTGGTGTT--GGAAAACCAGCCCTTGGTTCCTCTCTGGGCAGGAGCTG i nomLeu3.chr20 C 0 M 1530 s rheMac3.chr12 11924742 295 + 106825570 TTTGCTGCTGTCTTCCTTGTTCGAATCAGTTATTCCATAATCACCATGTGGGGGCTTCTCCAGGGACTCGGTCCACTGCAGTGCAGGGAATATTCTCCATTAGCGTGGTGAGATTGCCATGGAGACAGATAAGCTAGTGTCAGGTCTTGCCTAGTGTTGGGGATTTACAGTCCCCGGACGTGTTTGTGAGCCGGACGGTGTAGTTACCA-GGACGCTTCTGGAAGTCATTTTCTCAGCCCTTTGAAGGGCAGTGGTGTT--GGAAAACC-GCTCTTGGTTCCTCTCTGGGCAGGAGATG i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37628959 296 + 132586672 TTTGCTGCTGTCTTCCTTGTTCGAATCAGTTATTCCATAATCACCATGTGGGGGCTTCTCCAGGGACTCGGTCCACTGCAGTGCAGGGAATATTCTCCATTAGCGTGGTGAGATTGCCATGGAGACAGATAAGCTAGTGTCAGGTCTTGCCTAGTGTTGGGGATTTACAGTCCCCGGACGTGTTTGTAAGCCGGACGGTGTAGTTACCA-GGACGCTTCTGGAAGTCATTTTCTCAGCCCTTTGAAGGGCAGTGGTGTT--GGAAAACCGGCTCTTGGTTCCTCTCTGGGCAGGAGATG i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11286153 296 + 104110932 TTTGCTGCTGTCTTCCTTGTTTGAATCAGTTATTCCATAATCACCATGTGGGGGCTTCTCCAGGGACTCGGTCCACTGCAGTGCAGGGAATATTCTCCATTAGCGTGGTGAGATTGCCATGGAGACAGATAAGCTAGTGTCAGGTCTTGCCTAGTGTTGGGGATTTACAGTCCCCGGACGTGTTTGTGAGCCGGACGGTGTAGTTACCA-GGACGCTTCTGGAAGTCATTTTCTCGGCCCTTTGAAGGGCAGTGGTGTT--GGAAAACCGGCTCTTGGTTCTTCTCTGGGCAGGAGATG i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34383802 296 + 128595539 TTTGCTGCTGTCTTCCTTGTTCGAATCAGTTATTCCATAATCACCATGTGGGGGCTTCTCCAGGGACTCGGTCCACTGCAGTGCAGGGAATATTCTCCATTAGCGTGGTGAGATTGCCATGGAGACAGATAAGCTAGTGTCAGGTCTTGCCTAGTGTTGGGGATTTACAGTCCCCGGACGTGTTTGTGAGCCGGACGGTGTAGTTACCA-GGACGCTTCTGGAAGTCATTTTCTCGGCCCTTTGAAGGGCAGTGGTGTT--GGAAAACCAGCTCTTGGTTCCTCTCTGGGCAGGAGATG i chlSab2.chr10 I 230 C 0 s calJac3.chr6 87871098 297 - 158406734 TTTGCAGCTGTCTTCCTTGTTACAATCACTTATTCCGTAATCACCTTGTGGGGGCTTCTCCAGAGACTCGGTCCACTGCAGTGCAGGGAATATTCTCGATTAACGCGGTGAGATTGCCATGGAGACAGATAGCCTGGTGTCAGGTCTTGCCTAGTGTTGGGAATTTACAATCCCCAGACGTGTTTGTGAGCTGGACAGTGCAGTTACCAGGGACACTTCTGGAAGTCATTTTCTCGGCTCTTTGAAGGGCAGTGGTGGT--GGAAAACCAGCTCTTGGTTCCTCTACGGGCAGGAGCTG i calJac3.chr6 C 0 C 0 s mm10.chr2 49719898 254 + 182113224 TTTGCAGCCCTCCTCTCTGTTACAATCAGTTATTCCATAATCATCTCGTGG------------------AGTACACTGCAGTGCAGGGAATATTCTCGATTAACATGGTAAGATTGCCATGGAGACAGATTGCCTGGTGTCAGCTCTTGCATGGTGTTTGGAATTTACAGTCCCTAGAC----------ACCGGACATCGTGGTTACCAGGGTCGCTTCTGGAAGTCA-TTCCCCTGCCCTTTGAAGGGCAGTGGTGT----------------TTGGTTCCTCCCTGGGTTGAAGCTG i mm10.chr2 C 0 C 0 s canFam3.chr19 50629484 299 + 53741614 TTTGCAGCTGTGTGCCTTGTCACAGTCGGTTGTCCCATAATCACCTCGTGGGGCCTTCTCTGGAGACTCCGTCCACTGCAGTGCAGGGAATATTCTCGATTAACGTGGAGAGATTGCCATGGAGACAGATTGCCTAGTGTCAGGTCTCGCATAGTGCTGGGAATTTACAATCCCCAGACGTGTTTGTGAGCCGGACAGTGTAGTTACCAGGGACGCTTCTGGAAGTCATTTCCTCCGTCCTTTGAAGGGTAGCAGTGTTGGGGAGAACCAGCTCTCCGTTCCTCTCTGGGCAGGAGCTG i canFam3.chr19 C 0 C 0 a score=2930434.000000 s hg38.chr2_GL582966v2_alt 41976 942 + 96131 ------------------GGCTGCTTTAG-TTCCTGCGTGTTGCGGCTTTGTTCTTCTCCGTTGAAATGGCTGCTG-TAAAAAATAATCCTTACTGCCTGACCTTTAGAATATAAACTGAAAAGAGCTGGTTGTTTAGATGTAGCTTTGTAGGAGACATGTTAATGCTTTGATTGAGAGAATTGTTCAAGAGAAAC--CACAAAGTCTGCTGTAGGTTTCAAATACTGTTTTAATAATAATAAAAATAAACCTGAAATGGACTTGCATGG--CTATACCATGTTTTATTTTTGGAACTGAGCTCCAGCCATAAAATTATCGTAAAGATCTCAGAAACACAAATCACAGAATAAGTAAAAATAATAATTTATCTGCCAAGCCTACAAAGTTGCAAATTTGTCAGGGAGAGGAGGGGATAAGAGGTGGACTTTGAACAATA--------TTGCCTTTTGTgctttttacatatactatcttcatttatctttagaacaaccctgtgataaaggcattgttatttcttctcctttac-agaaaggaaaccaagAGGGTAAGCAGGAGATGGGCTTGTGATTAATGAGACCTGTTAAAAGGTACAATGTGGCTTTAGCATCCTGCCATAGCACTGGAGATG----AGAGAGTCCCTTGACTACTTTCACAGTGCCTTACAGC--AGCATTGGCTAGCTTGTTGAATCTCTGCCATCTGGGACAAC-CCTTCTACTTGGTGACGCTATCATTCCTTAATGGGAGAAGAGGGCAGCTTTAGGGGAAGTCAGGCCTGTGAC-TTTGGTTAGAACAGGTCACTTGCTGCTA----AGGTTATAGAAGTCTATCCCCGGCCCCTGCCCACTCAGCTGAATCAAAACACACACTGGGCAGCTCCTTAGCTTACCCTAGCCTCATGATACCATTGCCTCTTTGGCCATTTGAAACCAAAGAACACAGGGAATATATCTCTTCCAGATGTTTTTGTATC s panTro4.chr2B 153154739 942 + 247518478 ------------------GGCTGCTTTAG-TTCCTGCGTGTTGCGGCTTTGTTCTTCTCCGTTGAAATGGCTGCTG-TAAAAAATAATCCTGACTGCCTGACCTTTAGAATATAAACTGAAAAGAGCTGGTTGTTTAGATGTAGCTTTGTAGGAGACATGTTAATGCTTTGATTGAGAGAATTGTTCAAGAGAAAC--CACAAAGTCTGCTGTAGGTTTCAAATACTGttttaataataataaaaataaaCCTGAAATGGACTTGCATGG--CTATACCATGTTTTATTTTTGGAACTGAGCTCCAGCCATAAAATTATCGTAAAGATCTCAGAAACACAAATCACAGAATAAGTAAAAATAATAATTTATCTGCCAAGCCTACAAAGTTGCAAATTTGTCAGGGAGAGGAGGGGATAAGAGGTGGACTTTGAACAATA--------TTGCCTTTTGTgctttttacatatactatcttcatttatctttagaacaaccctgtgataaaggcattgttatttcttctcctttac-agaaaggaaaccaagAGGGTAAGCAGGAGATGGGCTTGTGATTAATGAGACCTGTTAAAAGGTACAATGTGGCTTTAGCATCCTGCCATAGCACTGGAGATG----AGAGAGTCCCTTGACTACTTTCACAGTGCCTTACAGC--AGCATTGGCTAGCTTGTTGAATCTCTGCCATCTGGGACAAC-CCTTCTACTTGGTGACGCTATCATTCCTTAATGGGAGAAGAGGGCAGCTTTAGGGGAAGTCAGGCCTGTGAC-TTTGGTTAGAACAGGTCACTTGCTGCTA----AGGTTATAGAAGTCTATCCCCGGCCCCTGCCCACTCAGCTGAATCAAAACACACACTGGGCAGCTCCTTAGCTTACCCTAGCCTCATGATACCATTGCCTCTTTGGCCATTTGAAACCAAAGAACACAGGGAATATATCTCTTCCAGATGTTTTTGTATC i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38361171 937 + 135000294 ------------------TGCTGCTTTAG-TTCCTGCGTGTTGCGGCTTTGTTCTTCTCCGTTGAAATGGCTGCTG-TAAAAAATAATCCTGACTGCCTGACCTTTAGAATATAAACTGAAAAGCGCTGGTTGTTTAGATGTAGCTTTGTAGGAGACATGTTAATGCTTTGATTGAGAGAATTGTTCAAGAGAAACCACACAAAGTCTGCTGTAGGTTTCAAATACTGTCTTAATAATAATAAAAATAAACCTGAAAGGGACTTGCATGG--CTATACCATGTTTTATTTTTGGAACTGAGCTCCAGCCACAAAATTATTGTGAAGATCTCAGAAACATAAATCACAGAATAAGT-------ATAATTTATCTGCCAAGCCTACAAAGTTGCAAATTTGTCAGGGAGAGGAGAGGATAAAAGGTGGACTTTGAACGATA--------TTGCCTTTTGTgctttttacatatactatcttcatttatctttagaacaaccctgtgataaaggcattgttatttcctctcctttac-agagagcaaaccaagAGGGTAAGCAGGAGATGGGCTTGTGATTAATGAGACCTGTTAAAAAGTACAATGTGGCTTTAGCGTCCTGCCATAGCACTGGAGATG----AGAGAGTCCCTTAACTACTTTCACAGTGCGTTGCAGC--AGCATTGGCTAGCTTGTTGGATCTCTGCCATCTGGGACAAC-CCTTCTACTTAGTGATGCTATAATTCCTTAATGGGAGAAGAAGGCAGCTTTAGGGGAAGTCAGGCCTGTGAC-TTTGGTTAGAACAGGTCACCTGCTGCTA----AGGTTATAGAAGTCTATCCCCGGCCCTTGCCCACTCAGCTGAATCAAAACACACACTGGGCAGCTCCTTAGCTTACCCTAGTCTCATGATACCATTGCCTCTTTGGCCATTTGAAACCAAAGAACACAGGGAATATGTCTCTTCCAGATGTTTTTGTATC i ponAbe2.chr2b C 0 C 0 s rheMac3.chr12 11925037 942 + 106825570 ------------------TGCTGCTTTAG-TTACTGCGTGTTGTGGCTTTGTTCTTCTCCGTTGAAATGGCTGCTG-TAAAAAATAATCCTGACGGCCTGACCTTTAGAATATAAACTGAAAAGAACTGGTTGTTTAGATGTAGCTTTGTAGGAGACATGTTAATGCTTTGATTGAGAGAATTGTTCAAGAGAAAC--CACAAAGTCTGCTGTAGGTTTCAAATACTGttttaataataataaaaataaaCCTGAAAGGGACTTGCATGG--CTATACCATGTTTTATTTTTGGAACTGAGCTCCAGCCACAAAGTTATTGTGAAGATCTCAGAAACACTAATCACAGAATAAGTAAAAATAGTAATTTATGTGCCAAGCCTACAAAGTTGCAAATTTGTCAGGGAGAGGAGGGGATAAGAGATGGACTTTAAACAATA--------TTGCCTTTTGTgctttttacatatgctatcttcatttatctttagaacaaccctgtgataaaggcattgttatttcctctcctttac-agaaagtaaaccaagAGAGGAAGCAGGAGATGGGCTTGTGATTAATGAGACGTGTTTAAAGGTACAATGTGGCTTTAGCGTCCTGCCATAGCACTGGAGATG----ACGGAGTCTCTTGACTACTTTCACAGTGCCTTGTAGC--AGCATTGGCTAGCTTGCTGGATTTCTGCCATCTGGGACAAC-CCTTCCACTTGGTGATGCTGTAATTCCTTAATGGGAGAAGAGGGCAGCTTTAGGGGAAGTCAGGCCTGTGAC-TTTGGTTAGAACAGGTCACTTGCTGCTA----AGGTTATAGAAGTCTATCCCCAGCCCCTGCCCACTCAGCTGAATCAAAACACACACTGGGCAGCTCCTTAGCTCACCCTAGCCTCATGATACCGTTGCCTCTTTGGCCATTTGAAACCAAAGAACACAGGGAATATGTCTCTTCCAGATGTTTTTGTATC i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37629255 942 + 132586672 ------------------TGCTGCTTTAG-TTACTGCGTGTTGTGGCTTTGTTCTTCTCCGTTGAAATGGCTGCTG-TAAAAAATAATCCTGACGGCCTGACCTTTAGAATATAAACTGAAAAGAACTGGTTGTTTAGATGTAGCTTTGTAGGAGACATGTTAATGCTTTGATTGAGAGAATTGTTCAAGAGAAAC--CACAAAGTCTGCTGTAGGTTTCAAATACTGTTTTAATAATAATAAAAATAAACCTGAAAGGGACTTGCATGG--CTATACCATGTTTTATTTTTGGAACTGAGCTCCAGCCACAAAGTTATTGTGAAGATCTCAGAAACACAAATCACAGAATAAGTAAAAATAGTAATTTATGTGCCAAGCCTACAAAGTTGCAAATTTGTCAGGGAGAGGAGGGGATAAGAGATGGACTTTAAACAATA--------TTGCCTTTTGTgctttttacatatgctatcttcatttatctttagaacaaccctgtgataaaggcattgttatttcctctcctttac-agaaagtaaaccaagAGAGGAAGCAGGAGATGGGCTTGTGATTAATGAGACCTGTTTAAAGGTACAATGTGGCTTTAGCGTCCTGCCATAGCACTGGAGATG----ACGGAGTCTCTTGACTACTTTCACAGTGCCTTGTAGC--AGCATTGGCTAGCTTGCTGGATTTCTGCCATCTGGAACAAC-CCTTCCACTTGGTGATGCTGTAATTCCTTAATGGGAGAAGAGGGCAGCTTTAGGGGAAGTCAGGCCTGTGAC-TTTGGTTAGAACAGGTCACTTGCTGCTA----AGGTTATAGAAGTCTATCCCCAGCCCCTGCCCACTCAGCTGAATCAAAACACACACTGGGCAGCTCCTTAGCTCACCCTAGCCTCATGATACCGTTGCCTCTTTGGCCATTTGAAACCAAAGAACACAGGGAATATGTCTCTTCCAGATGTTTTTGTATC i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11286449 942 + 104110932 ------------------TGCTGCTTTAG-TTACTGCGTGTTGTGGCTTTGTTCTTCTCCGTTGAAATGGCTGCTG-TAAAAAATAATCCTGACTGCCTGACCTTTAGAATATAAACTGAGAAGAACTGGTTGTTTAGATGTAGCTTTGTAGGAGACATGTTAATGCTTTGATTGAGAGAATTGTTCAAGAGAAAC--CACAAAGTCTGCTATAGGTTTCAAATactgttttaataataataaaaataaacctgaaaGGGACTTGCATAG--CtataccatgttttatttttggaaCTGAGCTCCAGCCACAAAGTTATTGTGAAGATCTCAGAAACACAAATCACAGAATaagtaaaaatagtaatttatCTGCCAAGCCTACAAAGTTGCAAATTTGTCAGGGAGAGGAGGGGATAAGAGATGGACTTTAAACAATA--------TTGCCTTTTGTGCTTTTTACATATGCTATCTTCATTTATCTTTAGAACAACCCTGTGATAAAGGCATTGTTATTTCCTCTCCTTTAC-AGAAAGTAAACcaagagaggaagcaggagatGGGCTTGTGATTAATGAGACCTGTTTAAAGGTACAATGTGGCTTTAGCGTCCTGCCATAGCACTGGAGATG----ACGGAGTCTCTTGACTACTTTCACAGTGCCTTGTAGC--AGCATTGGCTAGCTTGCTGGATTTCTGCCATCTGGGACAAC-CCTTCTACTTGGTGATGCTGTAATTCCTTAATGGGAGAAGAGGGCAGCTTTAGGGGAAGTCAGGCCTGTGAC-TTTGGTTAGAACAGGTCACTTGCTGCTA----AGGTTATAGAAGTCtatccccagcccctgcccactcAGCTGAATCAAAACACACACTGGGCAGCTCCTTAGCTCACCCTAGCCTCATGATACCGTTGCCTCTTTGGCCATTTGAAACCAAAGAACACAGGGAATATGTCTCTTCCAGATGTTTTTGTATC i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34384098 942 + 128595539 ------------------TGCTGCTTTAG-TTACTGCGTGTTGTGGCTTTGTTCTTCTCCGTTGAAATGGCTGCTG-TAAAAAATAATCCTGACTGCCTGACCTTTAGAATATAAACTGAAAAGAACTGGTTGTTTAGATGTAGCTTTGTAGGAGACATGTTAATGCTTTGATTGAGAGAATTGTTCAAGAGAAAC--CACAAAGTCTGCTGTAGGTTTCAAATACTGTTTTAATAATAATAAAAATAAACCTGAAAGGGACTTGCATGG--CTATACCATGTTTTATTTTTGGAACTGAGCTCCAGCCACAAAGTTATTGTGAAGATCTCAGAAACACAAATCACAGAATAAGTAAAAATAGTAATTTATCTGCCAAGCCTACAAAGTTGCAAATTTGTCAGGGAGAGGAGGGGATAAGAGATGGACTTTAAACAATA--------TTGCCTTTTGTgctttttacatatgctatcttcatttatctttagaacaaccctgtgataaaggcattgttatttcctctcctttac-agaaagtaaaccaagAGAGGAAGCAGGAGATGGGCTTGTGATTAATGAGACCTGTTTAAAGGTACAATGTGGCTTTAGCATCCTGCCATAGCACTGGAGATG----ACGGAGTCTCTTGACTACTTTCACAGTGCCTTGTAGC--AGCATTGGCTAGCTTGCTGGATTTCTGCCATCTGGGACAAC-CCTTCTACTTGGTGATGCTGTAATTCCTTAATGGGAGAAGAGGGCAGCTTTAGGGGAAGTCAGGCCTGTGAC-TTTGGTTAGAACAGGTCACTTGCTGCTA----AGATTATAGAAGTCTATCCCCAGCCCCTGCCCACTCAGCTGAATCAAAACACACACTGGGCAGCTCCTTAGCTCACCCTAGCCTCATGATACCGTTGCCTCTTTGGCCATTTGAAACCAAAGAACACAGGGAATATGTCTCTTCCAGATGTTTTTGTATC i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87871395 947 - 158406734 ------------------TGCTGCTTTAG-TTCCTGCGTGTTGCGGCTTTGTTCTTCTCCGTTGAAATGGCTGCTG-TAAAAAATAATCCTGACTACCTGACCTTTAGAATGTAAACTGGAAAGAGGTGGTTGTTTAGATGTAGCTTTGTAGGAGACATGTTAATGCTTTGATTGAGAGAATTGTTCAAGAGAAAC--CACAAAATCTACTATAGGTTTCAAATATTGTTTTAATAAGAATAAAAATAAACCTGAAAGGGACTTGCCTGGATATATACCATATTTTATTTTTGGAACTGAGCTCCAACCACAAAGTTGTTATAAAGATCCTAGAAACACAAATTACAGAATAAGTAAAAATAATAATTTATCTGCCAAGCCTGCAAAGCTGCAAATTTGTCAGGGAGAGAAGGGGATAAGAGATGGACTTTAAATAATA--------TTGCCTTTTGTGCTttttacatatactctcttcatttatctttagaacaactgtgtgataaaggcagtgttatttcctctcctttat-aaaaagcaaactaagAGGGTAAGCAGGAGATGAGCTTGTGATTAATGAGACCTGTTAATAGATCCAATGTGACTTTAGCGTCCTGCCATAGCACTGGAGATG----AGAGAGTCCCTTGACTACTTTCACAGTGCCTTGTAGC--AGCATTGGCTAGCTTGTCAGATCTCCGAAATCTGGGACAAC-TCTTCTACTTGGTGATGCTGTAATTCCTTAATGGGAGAAGAGGGAAGCTTTAGGGCAAGTCAGGCCTGTGACTTTTGGTTATAACAGGTCACTATCTATTAGAACAGGTTATAGGAGTCTATTCCTGGCCCCTGCCCACCCAGCTGAATCAAAACACACACTGGGCAGCTCCTTAGCTCACCCTAGCTCCATGGTATCATTGCCTCTTTGGCCATCTGAAACCAAAGAACAC--GGAATATGTCTCTTCCAGATGTTTTTGTACC i calJac3.chr6 C 0 C 0 s mm10.chr2 49720152 914 + 182113224 ------------------TGCTGCCTTTG-CTTCTGTGTGTGGCTGCTTTGTTCAGCTCCGTCTGAATGGTGGTTGAAAAAAAAAAATCCTGCCTGCCTGACCTTTAGAATATGAACTGGCGAGAGCTTGCTGTTTACATGTAGCTTTGTGGGAGATGTGTTGACACTTTGATTCAGAGAAGTGCTCAGGAGAAAC--CAGAAAGGCTGCTGTGGCTTCCAAACACTGTTTTCATAATGATAAAAATAACCCTGAAATGGACTTGCATAA--CTATTTGGTATTTTACTTTGTAAAAGACCGCTTGGGTACTAAGTTATTTTGAATATGCTAGAAAAATTAATTG-AGACTCAG---AACGAATATCTGAACTGCCAAGCATGCGTAGTTGCGCACTCCTCAGGGAG----------CAGGGGTGGACTTCAGACTGTG--------ATGCTGGCCGTGCTCCTGACATCCTCCCTCTTCCTGCATCTTTAGAGCAATTTCATGATAAAAGGAGCCTTGCTTCCTCTTCTGTAC-AGAAAGCAAATGAAGAAGCTAAGCAGGCTACGTGCCTGCGAGTAATTAGACCTGTGAAAATGTGCAGCACGGCTTCAGGAACCCGCTGCAGCACTAGAGATGTTTATGAGAGTTTATTGATCATTTTCA-AGGGGACCATAGC--AGCA-GGGTCAGCTTTCTGGACCTCTGCAACCTGGAGCATCACCTACCCCTCGGTAATGATGC----------TGTCAGAAGAAGACAACTTTAGGGGGAATCGGATCTGGGAC--TTGGTTTGAGCAGGTCACTTGT---------AGGTCACAGGAGTTAATCCCTGGCCTCTGTCTGCCCAGATGAATTTAAAAGGGGGTGGGGGCAGCCCTCAGTTCATCTT-GCTTACAGATATCATTGCCTGTCTAGCCATTTGGAACCAAAGCTCGCAGGGAATACATCTCTTGCAAATG-TCTTGGATC i mm10.chr2 C 0 C 0 s canFam3.chr19 50629783 889 + 53741614 TGCTCTCCTACGGATGCCTCCTGCTTTTGTTTCCTGCGTGTTGCTGCTTTGTTCTTCTCGGCCTGAACGGCTGCTG-TAAAAAATAATCCTGACTGCCTGACCTTTGGAATATAAACTGGGAAGAGCTCCCTGTTTAGATGTAGCTTTGTAGGGGACATGTTGATGCTTTGATTCAGAGAATTGTTTTAGAGAAAC--CAGAAAGTCGGCTAGTGGTTTCGAATATTGTTTTAGTAATCACAAAAATAAGCCTGAAAGGGACTTGTGTAG--TTACATTGTGTTTTATTTTTGGAATCGAGCTACAACCACAAAGGTCTTGTGAAGACCTCAGGAACAGTAATCTCGGAACAAGTAAAAAA-------TACCTGCAAAGCGCAAACAGTTGATAAATCGTTAGGGCGAGGACAGGATAAGAGATGGACTTTAAACAATAATAAGCTTTTGCTTTTT----TTTTTACGTAGCCTATGGTAATTCAATCTTTAAGAAATGCCGTGTTAAAGGAATCATTATTTTTCGTCCTTTACGAAAAAGCAAGGGAAGAGGTTAAGCAGAAGATGGACTTGTGATTAATTAGATCAGTTAAAAGATGCAGCGTGGC-TCAGCGTCCTGCCACGGTACCGGAGATG-TTAGCGAGGTTTGTCGAGTACGTTCAGGGTGCCTCGCGGCAGAGCATTGGCT-GCTTGATGAACCGCTGTGTTCTTGGACAAC-TCTGGTACTCAGTGATGCTGCAGTTCCTCAGTGGGGAAAAGGGGCAGATTTAG---------------------------------GGTCACTGGCCAGT-----AGGCTCTAGGGCATCATCCCTGG---------------------------------------GCTCCTTAGCTCACCCCAGGCTCGTGGTGGCACTGGCTCT-TGGCCATGTGGAACCAAGGAACGTGGGGACTAGGTCTCTTCCAGCGGTGTTTGCATC i canFam3.chr19 C 0 C 0 e nomLeu3.chr20 82313189 1530 - 85365473 M a score=3439403.000000 s hg38.chr2_GL582966v2_alt 42918 980 + 96131 TTACCTCTTTACTTGGAGTGAGTTGGCCTGTGGATAATATGACCAT-G----------TTCTGGTTGGTGTCTGGTCTGGTACAGCTAAGAATTTCATCTTTGTCATGCGTAAGCTGAAAGATTAAATTCATACTGTACTGGATTGCCCTG-TTCCCAAATTTCAGAAGCTAGAGCTCAAAAATTAGAGATACAGTCACAATCCAAGAAGAggaaggatatttaccaaagtgttagtggtgaatttctct--ggggaaggaacagaattagaagggaggggtgaaggaggactttcaagttttagttgtatactccacattgct--tgagttgtttatgttaagaatgtatcctgaatta-ttgtgtgattagaaaAtctgtctgtctgtctgtctgtctgtctatctatctatctatctatctatctatctatctatctatctatgtctatctatc--------tCTAATATGTTTAAG-----AAAAAAAA------------AGA-ACATGGTACAGCTTTTATAGCCCATGGATTTAGCAGACTGTAGAGAATATAGATCCTTTAATTGGATGAAATCCAGTCTGCACACTAAGGTTGTTGATGGATATTTTAagccaggaattggaactgaatg-aaatattgatttggttcaggttctgttcaaaggctactctgatattctggttttgtttaaggtcaataa-ttttagaaaaAACGCTTAAGTATAG----CAGTCTTGTTGG-----AAAAGGAAAAAGGGTT-GGCTCAATTTTGTATTCAGCAAGGTAATAGTTTATTCTATGTTTTGCTTCAAGTTGCTGCTTCAAACGGAACTGTGATACAAAAGTGAAAGCATTGGGTGTTAATTTTACTTAACACGGAGGCCCCATGTAGTATTTTGTGGTTATGCAGTGAGATAATGGAGTCATAAGCAGCAGAACTAAACTATCACA--GTGTTTTGTT--TATATTGAGATAAATGTGTACAGTGTTCAGGTGGGTTCCTTGAAGCATGATATATATTGTT s panTro4.chr2B 153155681 952 + 247518478 TTACCTCTTTACTTGGAGTGAGTTGGCCTGTGGATAATATGACCAT-G----------TTCTGGTTGGTGTCTGGTCTGGTACAGCTAAGAATTTCATCTTTGTCATGCGTAAGCTGAAAGATTAAATTCATACTGTACTGGATTGCCCTG-TTCCCAAATTTCAGAAGCTAGAGCTCAAAAATTAGAGATACAGTCACAATCCAAGAAGAggaaggatatttaccaaagtgttagtggtgaatttctct--ggggaaggaacagaattagaagggaggggtgaaggaggactttcaagttttagttgtatactccacattgct--tgagttgtttatgttaagaatgtatcctgaatta-ttgtgtgattagaaaatctgtct----------------------------atctatctatctatctatctatctatctatctatctctatctatc--------tCTAATATGTTTAAG-----AAAAAAAA------------AGA-ACATGGTACAGCTTTTATAGCCCATGGATTTAGCAGACTGTAGAGAATATAGATCCTTTAATTGGATGAAATCCAGTCTGCACACTAAGGTTGTTGATGGATATTTTAAGCCAGGAATTGGAACTGAATG-AAATATTGATTTGGTTCAGGTTCTGTTCAAAGGCTACTCTGATATTCTGGTTTTGTTTAAGGTCAATAA-TTTTAGAAAAAAGGCTTAAGTATAG----CAGTCTTGTTGG-----AAAAGGAAAAAGGGTT-GGCTCAATTTTGTATTCAGCAAAGTAATAGTTTATTCTATGTTTTGCTTCAAGTTGCTGCTTCAAGCGGAACTGTGATACAAAAGTGAAAGCATTGGGTGTTAATTTTACTTAACACGGAGGCCCCATGTAGTATTTTGTGGTTATTCAGTGAGATAATGGAGTCATAAGCAGCAGAACTAAACTATCACA--GTGTTTTGTT--TATATTGAGATAAATGTGTACAGTGTTCAGGTGGGTTCCTTGAAGCATGATATATATTGTT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38362108 979 + 135000294 TTACCT-----CTTGGAGTGAGTTGGCCTGTGGATAATATGACCAT-G----------TTCTGGTTGGTGTCTGGTCTAGTACAGCTAAGAATTTCATCTTTGTCATGCGTAAGCTAGAAGATTAAATTCATACTGTACTGGATTGCCCTG-TTCCCAAATTTCAGAAGCTAGAGCTCAAAAATTAGAGATACAGTCACAATCCAAGAAGAGGAAGGATATTTACCAAAGTGTTAGTGGTGAATTTCTCT--GGGGAAGGAACAGAATTAGAAGGGAGGGGTGAAGGAGGACTTTCAAGTTTTAGTTGTATACTCCATATTGCT--TGAGTAGTTTATGTTAAGAATGTATCCTGAATTA-TTGTGTGATTAGAAAatctatctgtctgtctgtctatctatctatccatctatctatctatctatctatctatctatctatctatatctgtctatctatctctatctaACATGTTTAAG---------AAAA------------AGA-ACACGGTACTGCTTTTATAGCCCATGGATTTAGCAGACTGTAGAGAATATAGATCCTTTAATTGGATGAAATCCAGTGTGCACACTAAGGTTGTTGATGGATATTTTAAGCCAGGAATTGGAACTGAATG-AAATATTGATTTGGTTCAGGTTCTGTTCAAAGGCTACTCTGATATTCTGGTTTTGTTTCAGGTCAATAA-TTTTAGAAAAAAGGGTTAAGTATAG----CAGTCTTGTTGG-----AAAAGGAAAAAGGGTT-GGCTCAATTTTGTATTCAGCAAAGTAATAGTTTATTCTACGTTTTGCTTCAAGTTGCTGCTTCAAACGGAACTGTGATACAAAAGTGAAAGCATTGGGTGTTAATTTTACTTAACACGGGGGCCCCATGTAGTATTTTGTGGTTATTCAGCGAGATAATGGAGTCATAAGCAGCAGAACTAAACTATCACA--GTGTTTTGTT--TATATTGAGATAAATGTGTACAGTGTTCAGGTGGGTTCCTTGAAGCATGATACATATTGTT i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82314744 949 - 85365473 TTACCTCTTTACTTGGAGTGAGTTGGCCTGTGGATAATATGACCATCC----------TTCTGGTTGGTGTCTGGTCTAGTACAGCTAAGAATTTCATCTTTGTCATGCGTAAGCTGGAAGATTAAATTCATACTGTACTGGCTTGCCCTG-TTCCCAAATTTCAGAAGCTAGAGCTCAAAAATTAGAGATACAGTCACAATCCAAGAAGAGGAAGGGTATTTACCAAAGTGTTAGTGGTGAATTTCTCTGGGGGGAAGGAACAGAATTAGAAAGGAGGGATGAAGGAGGACTTTCAAGTTTTAGTTGTATACTCCACATTGCT--TGAGTTGTTTG----------------TGAATTA-TTGTGTGATTAGAAAatctatctgtctgtctgtctatct------------gtctatctatctatgtatctatgtatctatctatctCTA--------------TCTAATATGTTTAAG---AAAAAAAAAA------------AGA-ACACAGTACTGCTTTTATAGCCCATGGATTTAGCAGACTGTAGAGAATATAGATCCTTTAATTGGATGAAATCCAGTCTGCACATTAAGGTTGTTGATGGATATTTTAAGCCAGGAATTGGAACTGAATG-AAATATTGATTTGGTTCAGTTTCTGTTCAAAGGGTACTCTGATATTCTGGTTTTGTTTCAGGTCAATAA-TTTTAGAAAAAAGGCTTAAGTATAG----CAGTCTTGTTGG-----AAAAGGAAAAAGGGTT-GGCTCAATTTTGTATTCAGCAAAGTAATAGTTTATTCTACGTTTTGCTTCAAGTTGCTGCTTCAAACGGAACTGTGATACAAAAGTGAAAGCATTGGGTGTTAATTTTACTTAACACGGAGGCCCCATGTAGTATTTGGTGGTTATTCAGTGAGATAAT--AGTCATAAGCAGCAGAACTAAACTATCACA--CTGTTTTGTT--TATATTGAGATAAATGTGTACAGTGTTCAGGTGGGTTCCTTGAAGCATGATATATATTGTT i nomLeu3.chr20 M 1530 C 0 s rheMac3.chr12 11925979 972 + 106825570 TTACCTCTTTACTTGGAGTGAGTTGGCCTGTGGATAATGTGACCAT-G----------TTCTGGTTGGTGTCTGGTCTAGTACAGCTAAGAATTTCATCTTTGTCATGCCTAAGCTGGAAGATTAAATTCATACTGTATTGGATTGCCCTG-TTCCCAAATTTTAGAAGCTAGAGCTCAAAAATTAGAGATACTGTCACAATCCAAGAAGAggaaggatatttaccaaagtgttagtggtgaatttctct--ggggaaggaacagaattagaagggaggggtgaaggaggactttcaagttttagttgtatattccacattgct--tgagttgtttatgttaagaatgtatcctgaattatttgtgtggttagaa--------tatctatctatct----------------atctatctatctatctatctatctatctatctccgtctatctatctatctctatctaatatgtttaagaAAAAAAAAAAAA------------AAA-ACACGATACTGCTTTTATAGCCCATGGATTTAGCAGACTGTAGAGAATATAGATCCTTTAATTGGATGAAATCCAGTCTGCACACTAAGGTTGTTGATGGATATTTTAAGCCAGGAATTGGAACTGAATG-AAATATTGATTTGGTTCAGGTTCAGTTCAAAGGCTACTCTGATATTCTGGTTTTGTTTCAGGTCAATAA-TTTTAGAAAAAAGGCTTAAGTATAGC--ACAGTCTTGTTGG-----AAAAGGAAAAAGGGTT-GGCTCAATTTTATATTCAGCAAAGTAATAGTTTATTCTACGTTTTGCTTCAAGTTGCTGCTTCAAATGGAACTGTGATACAAAAGTGAAAACATTGGGTGTTAATTTTACTTGACACGGAGGCCCCATGTCGTATTTTGTGGTTATTCAGTGAGATAATGGAGTCATAAGCAGCAGAACTAAACTATGACA--GTGTTTTGTT--TATATTGAGATAAATGTGTACAGCGTTCAGGTGGGTTCCTTGAAGCATGATATATATTGTT i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37630197 972 + 132586672 TTACCTCTTTACTTGGAGTGAGTTGGCCTGTGGATAATGTGACCAT-G----------TTCTGGTTGGTGTCTGGTCTAGTACAGCTAAGAATTTCATCTTTGTCATGCCTAAGCTGGAAGATTAAATTCATACTGTATTGGATTGCCCTG-TTCCCAAATTTTAGAAGCTAGAGCTCAAAAATTAGAGATACTGTCACAATCCAAGAAGAggaaggatatttaccaaagtgttagtggtgaatttctct--ggggaaggaacagaattagaagggaggggtgaaggaggactttcaagttttagttgtatattccacattgct--tgagttgtttatgttaagaatgtatcctgaattatttgtgtggttagaa----Catctatctatctatct----------------atctatctatctatctatctatctatctatctccgtctatctatctatctCTATCTAATATGTTTAAG----AAAAAAAAA------------AAA-ACACGATACTGCTTTTATAGCCCATGGATTTAGCAGACTGTAGAGAATATAGATCCTTTAATTGGATGAAATCCAGTCTGCACACTAAGGTTGTTGATGGATATTTTAagccaggaattggaactgaatg-aaatattgatttggttcaggttcagttcaaaggctactctgatattctggttttgtttcaggtcaataa-ttttagaaaaAAGGCTTAAGTATAGC--ACAGTCTTGTTGG-----AAAAGGAAAAAGGGTT-GGCTCAATTTTATATTCAGCAAAGTAATAGTTTATTCTACGTTTTGCTTCAAGTTGCTGCTTCAAATGGAACTGTGATACAAAAGTGAAAACATTGGGTGTTAATTTTACTTGACACGGAGGCCCCATGTCGTATTTTGTGGTTATTCAGTGAGATAATGGAGTCATAAGCAGCAGAACTAAACTATGACA--GTGTTTTGTT--TATATTGAGATAAATGTGTACAGCGTTCAGGTGGGTTCCTTGAAGCATGATATATATTGTT i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11287391 984 + 104110932 TTACCTCTTTACTTGGAGTGAGTTGGCCTGTGGATAATGTGACCAT-G----------TTCTGGTTGGTGTCTGGTCTAGTACAGCTAAGAATTTCATCTTTGTCATGCCTAAGCTGGAAGATTAAATTCATACTGTATTGGATTGCCCTG-TTCCCAAATTTTACAAGCTAGAGCTCAAAAATTAGAGATACTGTCACAATCCAAGAAGAGGAAGGATATTTACCAAAGTGTTAGTGGCGAATTTCTCT--GGGGAAGGAACAGAATTAGAAGGGAGGGGTGAAGGAGGACTTTCAAATTTTAGTTGTATATTCCACATTGCTTATGAGTTGTTTATGTTAAGAATGTATCCTGAATTATTTGTGTGGTtagaatatctatctatctatctatct----------------atctatctatctatctatctatctatctatctccgtcta--tatctatctctatctaatatgtttagaaaaaaaaaaaaaa------------aaacaaacgataCTGCTTTTATAGCCCATGGATTTAGCAGACTGTAGAGAATATAGATCCTTTAATTGGATGAAATCCAGTCTGCACACTAAGGTTGTTGATGGATATTTTAAGCCAGGAATtggaactgaatgaaaatattgATTTGGTTCAGGTTCAGTTCAAAGGCTACTCTGATATTCTGGTTTTGTTTCAGgtcaataatttttagaaaaaaggcTTAAGTATAGC--ACAGTCttgttgg-----aaaaggaaaaagggtTAGGCTCAATTTTATATTCAGCAAAGTAATAGTTTATTCTACGTTTTGCTTCAAGTTGCTGCTTCAAATGGAACTGTGATACAAAAGTGAAAACATTGGGTGTTAATTTTACTTGACACGGAGGCCCCATGTCGTATTTTGTGGTTATTCAGTGAGATAATGGAGTCATAAGCAGCAGAACTAAACTATGACA--GTGTTTTGTT--TATATTGAGATAAATGTGTACAGTGTTCAGGTGGGTTCCTTGAAGCATGATATATATTGTT i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34385040 974 + 128595539 TTACCTCTTTACTTGGAGTGAGTTGGCCTGTGGATAATGTGACCAT-G----------TTCTGGTTGGTGTCTGGTCTAGTACAGCTAAGAATTTCATCTTTGTCATGCCTAAGCTGGAAGATTAAATTCATACTGTATTGGATTGCCCTG-TTCCCAAATTTTAGAAACTAGAGCTCAAAAATTAGAGATACTGTCACAATCCAAGAAGAggaaggatatttaccaaagtgttagtggtgaatttctcc--ggggaaggaacagaattagaagggaggggtgaaggaggactttcaagttttagttgtatattccacattgct--tgagttgtttatgttaagaatgtatcctgaattatttgtgtggttagaatatctatctatctatctatct----------------atctatctatctatctatctatctatctatctctgtctatctatctatctCTATCTAATATGTTTAAG------AAAAAAA------------AAA-ACACAATACTGCTTTTATAGCCCATGGATTTAGCAGACTGTAGAGAATATAGATCCTTTAATTGGATGAAATCCAGTCTGCACACTAAGGTTGTTGATGGATATTTTAagccaggaattggaactgaatg-aaatattgatttggttcaggttcagttcaaaggctactctgatattctggttttgtttcaggtcaataa-ttttagaaaaAAGGCTTAAGTATAGC--ACAGTCTTGTTGG-----AAAAGGAAAAAGGGTT-GGCTCAATTTTATATTCAGCAAAGTAATAGTTTATTCTATGTTTTGCTTCAAGTTGCTGCTTCAAATGGAACTGTGATACAAAAGTGAAAACATTGGGTGTTAATTTTACTTAACACGGAGGCCCCATGTCGTATTTTGTGGTTATTCAGCGAGATAATGGAGTCATAAGCAGCAGAAGTAAACTATGACA--GTGTTTTGTT--TATATTGAGATAAATGTGTACAGTGTTCAGGTGGGTTCCTTGAAGCATGATATATATTGTT i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87872342 904 - 158406734 TTGCCTC--TACTTGGAGTGAGTTGGCCT---GATAATATGACTAT-C----------TTCTGGTTGGTGTCTGGTCTCGTTCACCTAAGAATTTCATCTTTGTTATGCTTAAGCTGGAAGATTAAATTCATACTGTACTGGATTGCCCTG-TTCCCAAATTTCAGAGGCTAGAGCTCATAAATTAGACATACAGTCACAATCTAAGAAGAAGAAGGACATTTACCAAAGTGTTAGTGGTGAATTGCTCT--GGGGAAGGAACAGAATTAGAAGGGAGGGGTAAAGAAGGACTTTCTAGTTATAGTTGTATACCCCACATTGCT--TGAGTTGTTTATGTTGAGAATGTATCCTG-ATTATTTCCGTGGTTAGAAA------------------------------------ATCTC------------------------------------------------TCTAATATGTTTAAG-AAAAAGAAAAAA------------GGA-ACACGGTACTGCTTTTACAGCCCATGGATTTAGCAGACTGTAGAGAAAATAGATCCTTTAATTGGATGAAATCCAGTCTGCACATTAAGGTTGTTGATGGATATTTTAAGCCAGGAATTGGAACTGAATG-GAATATTGATTTGGTTCAGGTTCAGTTCAAAGGCTACTCTGATATTCTGGTTTTGTTTCAGGTCAATAA-TTTTAGAAAAAAGGCTTAAGTATAGC--ACAGTCTTGTTGG-----AAAAGGAAAAAGGGTT-GGCTCAATTTTGTATTCAGCAAAGTAATAGTTTATTATACATTTTGCTTCAAGTTGCTGCTTCAAACAGAACTGTGATAC-AAAGTAAAAGCACTGGGTGTTAACTTTACTTGACATGGAGGCCCTGTGGACTATTTTGTGATTATTCAGTGAGATAATGGAGTCATAAGCAGCAGAATTAAACCATCACA--GTGTTTTCTT--TCTACTGAGATAAATGTATACAGTGTTCAGGTGGGTTCCTTGAGGCATGATATATATTGTT i calJac3.chr6 C 0 C 0 s mm10.chr2 49721066 846 + 182113224 TTATCTCTTTCTCTGCAGCGAGT--GTCTGCGGGTGATCTGGTGGT-GCATGGAGGGTTTCTGG-----GTCAGGTC-AGTACATTTCAGAGTTTCACCTTCATCGGGTTGAAGCAGGAAGGTCAAATTAA-----TAGTGGGTTGCTGTGTTTCCCAGATTTTACAAACTATTCCTGAAAAATCCAAAAAATAACCATATGCC-----------GGACTTTCAC--AAATGCCAGTGTCAGATTCCTAA---------GAACAGAATTAGAAAG-------AAACAAGAGGTTTTAA--------TATATGCTGTGCATTTCC--TGAGT-GTCTG-----AGGGCACATTCTGAATTATCTGGGTGGTTAGAAATTATGTCTGTGTCTTCATCC----------------ATCCACTCACCCACTCAACTGTCTGTTCATCT---------------------CGTCAT--------------------------------------CCATCTTGCCTCTCTGATAGCCCATGGGTTTAACGGACTGTAGAGAATATTGATTCTTTAAATGAGTGAAATTCATTCCTCATGCTAACGTTGTTGATGAACGTTTTGAACCAGCGATTGGAGCTGGGCG-ATATACTGATTTGATTCAGGTTCAGCTCAGAGGTCACCATGA---TCTGGTTTTATTTCAGGTCAATAA-TTTTAG-AGGAACGCTCCCACATAGCGTGTAGTCCAGTTGA-----CGGGGAAACACAAGGA-GACTTTGTTTTACCTGCAGTGAAGC-ATGGCTTA-TCTAGGGCTTGTTTCCCGTTACTGCTTTAGATGTAAC--TGATACAAAAGTGAAGTCATT-CGTGTTAGCTTTGCTT-ACATAGAAGCC---------------------TGCA---------------CACAAGCCTTAAAGCCAGGGCACCCCA--GTGTTTTGTG--TATGCTGAGAT-AATGTGCGCTGTGTTCAGGTGGGTTCCTGGAGGCATGAAATATACTGTT i mm10.chr2 C 0 I 13 s canFam3.chr19 50630672 883 + 53741614 TCGCCTCTGCACTCGGGGCAAGTTGGCATA-GGATGATAGGACTAT-G----------TTCT-GCTGGTTTCTGGTCTAGTGCAGTCAAGAATTGCACCTTCATCATGCTTAAGCTGCAAGATTAAATTCATGCTGCACTGGATTGCCCTG-TTCACAAAGTTCAGAAGGTAGAGCTGAAAAATTAGAGATACAGTC-TAACCCAACTAGGGGAAAGA--GTCACCAAAATGTTAGTGGTACGCATCTCT--GGAGAAGGATCAAAATTGGGAGGTAGGGGTGAAGGAGGGCTTTACAGTTTT-----------------------TGTGT--------------ATGTA-----------ATTTGTGGTTAGAAAAAG---------------------------------ATAGATCTATATATTTAG-----------------------------------GCTaaaaaaaaaaaaaaaaaaaaagaaaTCCTTGGGAACTAGA-ATATGGTACTGCTTTTATAGCCTGTGGATTTAGCAGGCCGGAGAGAATATAGATCCTTTAATTGGATGAAATCCAGTCTGTACTGCAAGGTCCTTGATGGATGTTTTAAACCAGGAATTGGAACTGAATG-AAATATTGATTTGGTTCAGGTTCAGTTCAAAGACTACTCTGATATTCTGGTTTTGTTTCAGGTCAATAA-TTTTAG-AAAAAGGCGTAGGTACAGT--ACAGTCTAGATGAGCTTCAGAAGGAAAAAGGGTT-GGCTCAGTCTTACATGCAGCAAAGGAATACTTCATTCCAGGTTT-------------TGCTTCAAATGGAACTGTGACACAGAAACGAAATCACTGGATGTTAATTTTATTTGACAGGGAGGCCTTCC-TACCGTTTTGTGATTATCAGGTGAGATTACGAAATCTTAAGCAGCAAAGCTAACCCATCACAAGGTGTTTTGTTTATATATTCAGATAAATGTGTGCAGTGTCCAGGTGGCTTCCTTGAGGCGTGTTGCATAGTGTT i canFam3.chr19 C 0 C 0 a score=170449.000000 s hg38.chr2_GL582966v2_alt 43898 84 + 96131 AATGAAGCCACAGAT--TGAAATCTCAGTTACTCTA------------------TTAtttatttttatttatttattt----atttat----tgagacaaagtcttgctctt s panTro4.chr2B 153156633 84 + 247518478 AATGAAGCCACAGAT--TGAAATCTCAGTTACTCTA------------------ttatttatttttatttatttattt----atttat----tgagacaaagttttgctctt i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38363087 84 + 135000294 AATGAAGCCACAGAT--GGAGATCTCAGTTACTATA------------------ttatttatttttatttatttattt----atttat----tgagacaaagtctcactctt i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82315693 88 - 85365473 AATGAAGCCACAGAT--TGAGATCTCAGTTACTCTA------------------ttatttatttttatttatttattt----atttatttactgagacaaagtctcactctt i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11926951 82 + 106825570 AATGAAGCCACAGAT--TGAGATCTCAGTTACTCTA------------------ttattta--tttatttatttattt----cttttt----tgagacaaggtcttgctctt i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37631169 74 + 132586672 AATGAAGCCACAGAT--TGAGATCTCAGTTACTCTA------------------TTAttta--tttattta------------ttttt----tgagacaaggtctcgctctt i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11288375 101 + 104110932 AATGAAGCCACAGAT--TGAGATCTCAGTtactctattatttatttttatttatttattta--tttatttatttattta---ttttat----tgagacaaagtctcactctt i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34386014 104 + 128595539 AATGAAGCCACAGAT--TGAGATCTCAGTTACTCTATTATTtttatttatttatttattta--tttatttatttatttatttattttt----tgagacaaagtctcgctctt i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87873246 69 - 158406734 AATGAAGCCACAGGT--TGAGATCACAGTTATTCTA---------------------------tttattt------tt----attttt----tgagacaatgtctcactctc i calJac3.chr6 C 0 C 0 s canFam3.chr19 50631555 32 + 53741614 AACAAAGCCACAGATGAGGAGATC-CAGTTCTT------------------------------------------------------------------------------- i canFam3.chr19 C 0 C 0 e mm10.chr2 49721912 13 + 182113224 I a score=397225.000000 s hg38.chr2_GL582966v2_alt 43982 131 + 96131 ggcacccaggctggagtgcaatggcgcgatctcggctcattgcaaccttcgcctctcgggttcaagcgactcttgttcctcagcctcccaaatagctgggattacaggtgtgcaccaccacacccagcca--------a s panTro4.chr2B 153156717 131 + 247518478 ggcacccaggctggagtgcaatggcgcgatctcggctcattgcaacctttgcctctcgggttcaagcgactcttgttcctcagcctcccaaacagctgggattacaggtgtgcaccaccacacccagcca--------a i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38363171 131 + 135000294 ggcacccaggctggagtgcaatggcgcgatctcggctcactgcaaccttcgcctctcgggttcaagcggctctcgttcctcagcctcccaaatagctgagactacaggtgtgcaccaccacacccagcta--------a i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82315781 131 - 85365473 ggcacccaggctggagtgcaatggcgtgatctcggctcactgcaaccttcgcctctcgggttcaagcgattctcgttcctcagcctcccaaatagctgggattacaggtgtgcaccaccatgccccgcta--------a i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11927033 139 + 106825570 ggtgcccaggctggagtgcaatggcactatcgcggctcactgcaaccttcgcctctcgggttcaagcgattcttgttcctcagcctcccaaatagctaggattacaggtgtgcaccaccacgcccagctaatttttgta i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37631243 139 + 132586672 ggtgcccaggctggagtgcaatggcactatcgcggctcactgcaaccttcgcctctcgggttcaagcgattcttgttcctcagcctcccaaatagctaggattacaggtgtgcaccaccacgcccagctaatttttgta i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11288476 139 + 104110932 ggtgcccaggctggagtgcaatggcactatcgcggctcactgcaaccttcgcctctcgggttcaagcgattcttgttcctcagcctcccaaatagctaggattacaggtgtgcaccaccacgcccagctaatttttgta i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34386118 139 + 128595539 ggtgcccaggctggagtgcaatggcactatcgtggctcactgcaaccttcgcctctcaggttcaagcgattcttgttcctcagcctcccaaatagctaggattacaggtgtgcaccaccacgtccagctaatttttgta i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87873315 139 - 158406734 gtcgcccaggctggagtgcagtggcgcgatcttggctcactgcaacctctgcctctcgggttcaagtgattcttgttcctcagcctctcaaatagctgggattacaggtgtgcgccaccacacctggccaatttttgta i calJac3.chr6 C 0 C 0 e canFam3.chr19 50631587 0 + 53741614 C e mm10.chr2 49721912 13 + 182113224 I a score=415158.000000 s hg38.chr2_GL582966v2_alt 44113 152 + 96131 tttttgtacaaatactaagttttgtatttttagtagagatggtatttcaccatgttagccaggctggtctcgaattcctggcctcaagttatctgctcgtcttggcctGAGCCACTGTGCCCTGCCTTCTATCATGTATTTTTGAAAAA--CTC s panTro4.chr2B 153156848 152 + 247518478 tttttgtacaaatactaagttttgtatttttagtagagatggtatttcaccatgttagccaggctggtctcgaattcctggcctcaagttatctgcccgtcttggcctGAGCCACTGTGCCCTGCCTTCTATCATGTATTTTGGAAAAA--CTC i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38363302 151 + 135000294 tttttgtacaaatactaaattttgtatttttagtagagatggtatttcaccatgttggccaggctggtctcgaattcctggcctcaagttatctgcccgtcttggcctGAGCCACTGTGCCCTGCCTTCTATCATGTATTTT-GAAAAA--CTC i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82315912 152 - 85365473 tttttgtacaaatactaaattttgtaattttagtagagacagtatttcaccatgttggccaggctggtctcgaattcctggcctcaagttatctgcccgtattggcctGAGCCACTGTGCCCTGCCTTCTATCATATATTTTTGAAAAA--CTC i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11927172 151 + 106825570 tttttgtacaaatactgaattttctatttttactagagatggtatttcgccatgttggccaggctggtcttgaatt-ctggcctcaagttttctgcccgtcttggcctGAGCCACTGTGCCCTGCCTTCTGTCATTTATTTTTGAAAAA--CTC i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37631382 151 + 132586672 tttttgtacaaatactgaattttctatttttactagagatggtatttcgccatgttggccaggctggtcttgaatt-ctggcctcaagttttctgcccgtcttggcctGAGCCACTGTGCCCTGCCTTCTGTCATTTATTTTTGAAAAA--CTC i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11288615 151 + 104110932 tttttgtacaaatactgaattttgtatttttactagagatggtatttcgccatgttggccaggctgatcttgaatt-ctgGCCTCAAGTtttctgcccgtcttggcctgagccactgtgccctgccttctgtcatttatttttgaaaaa--ctc i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34386257 151 + 128595539 tttttgtacaaatactgaattttgtatttttactagagatggtatttcgccacgttggccaggctggtcttgaatt-ctggcctcaagttttctgcccatcttggcctGAGCCACTGTGCCCTGCCTTCTGTCATTTATTTTTGAAAAA--CTC i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87873454 154 - 158406734 tttttgtgcaaaaattaaattttgtatttttagtagagatggagtttcgccatgttggccaggctgatcttgaattcctggcctcaagtgatctgctcttcttggcctGAGCCACTGTGCCTGGCCTTCTATCATTTATTTTTGAAAAATTCTC i calJac3.chr6 C 0 C 0 s canFam3.chr19 50631587 27 + 53741614 -----------------------------------------------------------------------------------------------------------------------------TTTTTTTCTTTTTTTTTAGAAATT--CCC i canFam3.chr19 C 0 C 0 e mm10.chr2 49721912 13 + 182113224 I a score=967917.000000 s hg38.chr2_GL582966v2_alt 44265 252 + 96131 TCTGACTCAAGGCAGTTTTCCTGGGCAATTTTTACAAAATGGATTTTGTGGGCTGGGAACTGGGGTGAGGCTTGGAATACTGCAGACACTCTTACTACTGACTGTAGCAAGATGATTG------------TGGTGTTGATGGTAAACATTGTGATGGAAAAGTATGTTGGGTTTGGTTTTGCTTTCCAGGAAGATATTTGGGAG-ACTCAGTGGGGCCA-GTAGTTTTCTTAGAATCCTTTTTATGCACTTTATGTCTT-------TGATGTT s panTro4.chr2B 153157000 252 + 247518478 TCTGACTCAAGGCAGTTTTCCTGGGCAATTTTTACAAAATGGATTTTGTGGGCTGGGAACTGGGGTGAGGCTTAGAATACTGCAGACACTCTTACTACTGACTGTAGCAAGATGATTG------------TGGTGTTGATGGTAAACATTGTGATGGAAAAGTATGTTGGGTTTGGTTTTGCTTTCCAGGAAGATATTTGGGAG-ACTCAGTGGGGCCA-GTAGTTTTCTTAGAATCCTTTTTATGCACTTTATGTCTT-------TGATGTT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38363453 253 + 135000294 TCTGACTCAAGGCAGTTTTCCTGGGGAATTTTTACAAAATGGATTTTGTGGGCTGGGAACTGGGGTGAGGCTTGGAATACTGCAGACACTCTTACTACTGACTGTAGCAAGATGATTG------------TGGTGTTGATGGTAAACATTGTGATGGAAACGTATGTTGGGTTTGGTTTTGTTTTCCAGGAAGATATTTGGGAGAACTCAATGGGGCCA-GCAGTTTTCTTAGAATCCTTTTTATGCACTTTATGTCTT-------TGATGTT i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82316064 252 - 85365473 TCTGACTCCAGGCAGTTTTCCTGGGGAATTTTTACAGAATGGATTTTGTGGGCTGGGAACTGGGGTGAGGCTTGGAATACTGCAGACACTCTTACTACTGACTGTAGCAAGATGATTG------------TGGTGTTGATGGTAAACATTGTGATGGAAAAGTATGTTGGGTTTGGTTTTGCTTTCCAGGAAGATATTTGGGAG-ACTCAATGGGGCCA-GTAGTTTTCTTAGCATCCTTTTTATGCACTTTATGTCTT-------TGATGTT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11927323 264 + 106825570 TCTGACTCAACGCAGTTTTCCTGGGGAAATTTTACAAAATGGATTTTGTGGGCTGAGAACTGGGGTGAGGCTTGGAATACTGCAGACACTCTGACTACTGACTGCAGCAAGATGATGGTAAACATTGTGATGGTGTTGATGGTAAACATTGTGATGGAAAAGTATGTTGGGTTTGGTTTTGCTTTCCAGGAAGATATTTGGGAG-ACTCAGTGGGGCCA-GTAGTTTTCTTAGAATCCTTTTTATGCACTTTATGTCTT-------TGATGTT i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37631533 264 + 132586672 TCTGACTCAACGCAGTTTTCCTGGGGAATTTTTACAAAATGGATTTTGTGGGCTGAGAACTGGGGTGAGGCTTGGAATACTGCAGACACTCTGACTACTGACTGCAGCAAGATGATGGTAAACATTGTGATGGTGTTGATGGTAAACATTGTGATGGAAAAGTATGTTGGGTTTGGTTTTGCTTTCCAGGAAGATATTTGGGAG-ACTCAGTGGGGCCA-GTAGTTTTCTTAGAATCCTTTTTATGCACTTTATGTCTT-------TGATGTT i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11288766 252 + 104110932 tCTGACTCAACGCAGTTTTCCTGGGGAATTTTTACAAAATGGAGTTTGTGGGCTGAGAACTGGGGTGAGGCTTGGAATACTGCAGACACTCTGACTACTGACTGCAGCAAGATGATTG------------TGGTGTTGATGGTAAACATTGTGATGGAAAAGTATGTTgggtttggttttgctttccagGAAGATATTTGGGAG-ACTCAGTGGGGCCA-GTAGTTTTCTTAGAATCCTTTTTATGCACTTTATGTCTT-------TGATGTT i papAnu2.chr12 C 0 I 1088 s chlSab2.chr10 34386408 252 + 128595539 TCTGACTCAACGCAGTTTTCCTGGGGAATTTTTACAAAATGGATTTTGTGGGCTGAGAACTGGGGTGAGGCTTGGAATACTGCAGACACTCTGACTACTGACTGCAGCAAGATGATTG------------TCGTGTTGATAGTAAACATTGTGATGGAAAAGTATGTTGGGTTTGGTTTTGCTTTCCAGGAAGATATTTGGGAG-ACTCAGTGGGGCCA-GTAGTTTTCTTAGAATCCTTTTTATGCACTTTATGTCTT-------TGATGTT i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87873608 252 - 158406734 TCTGATTCAGTGCCGTTTTCCTGGGGAGTTTTTACAAAATGGATTTTGTGGGGTGAGAACTGTGGTGAGGCTTGGAATACTGCAGACACTTTTACTATTGTCTGTAGCAAGAGGAGTG------------TGGTGTTGATGGTAAAGACTGTGATGGAAAAGTATGTTGGGTTTGGTTTTGCTTCCCAGGAAGATATTGGGGAG-ACTCAATGGGGCCA-GTAGTTTTCTTAGAATCTTTTTCATGCACTTTATGTCTT-------TGATGTT i calJac3.chr6 C 0 C 0 s mm10.chr2 49721925 239 + 182113224 TTTGGCTCAGGGCAG-TTTCCTGGGAAATGTTTGCAGAACAGATATTACGAGCTGGGAAGCTGAGTAAGGTCTGAGGTG-TCCTGAGGCTC-----AGGGGCTGGAG-----------------------TGAAGTTGCTGGC-TACACTGTGGTGGAGAACTGTCTTTGGTGTGGGTTTGCTTTCAAGTATTCCAGCTGAAAG-ATGGAGTCAGGCTGTGTGGTTTCCATAGAATCTGTTTCCTACA--TTCTGTCTTTGCATCATGATTTT i mm10.chr2 I 13 C 0 s canFam3.chr19 50631614 252 + 53741614 TCTGTCTTAGGGCAGTTTTCCTGGGGACTTTCCACAAAATGCATTTTATGGGCTGAGAACT-GGGTGAGGCTTGGAACATTGCAGACACTCC-----CTGATTGTAGCAAACTGAGTG------------TGAAGTCGATGGTAAACATTGTGATGGAAAAGTATGTTTGGTTTTGGTTTGCTTTCCAAAAAGATGTTTGAGAG-ACTCAGTTGGGCCACATGGTTTTCATAGAATCCTTTTTATGCA--GTCTGTCTTTGCAAGGTGATTTT i canFam3.chr19 C 0 C 0 a score=140427.000000 s hg38.chr2_GL582966v2_alt 44517 60 + 96131 CTTGTTGGAGATAGCCATTGGCCAGCTTGCAAGCTGTACCATTT--CTATCAATTTG-A--------------------------------------------------TTGA-------- s panTro4.chr2B 153157252 60 + 247518478 CTTTTTGGAGATAGCCATTGGCCAGCTTGCAAGCTGTACCATTT--CTATCAATTTG-A--------------------------------------------------TTGA-------- i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38363706 60 + 135000294 CTTGTTGGAGATAGCCCTTGGCCAGCTTGCAAGCTGTACCTTTT--CCATCAATTTG-A--------------------------------------------------TTGA-------- i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82316316 60 - 85365473 CTTGTTGGAGATAGCCATTGGCCAGCTTGCAAGCTGTACCTTTT--CCATCAATTTG-A--------------------------------------------------TTGA-------- i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11927587 60 + 106825570 CTTGTTGGAGATAGCCACTGGCCAGCTTGTGAGCTGTACCTTTT--CCATCAGTTTG-A--------------------------------------------------TTGT-------- i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37631797 60 + 132586672 CTTGTTGGAGATAGCCACTGGCCAGCTTGTGAGCTGTACCTTTT--CCATCAGTTTG-A--------------------------------------------------TTGT-------- i macFas5.chr12 C 0 C 0 s chlSab2.chr10 34386660 60 + 128595539 CTTGTTGGAGATAGCCACTGGCCAGCTTGCGAGCTGTACCTTTT--CCATCAATTTG-A--------------------------------------------------TTGT-------- i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87873860 55 - 158406734 CTTGTTGGAGACAGCCATTGGCCAGCTTACAAGCTGTACCTTTT--CCCTCAG--------------------------------------------------------TTGT-------- i calJac3.chr6 C 0 C 0 s mm10.chr2 49722164 60 + 182113224 CCTGATGG-GGCAGCCCCTGGCCAGCTTGAAATCCGTGCCTTTT--CCCCCTGTCAGCA--------------------------------------------------TTGT-------- i mm10.chr2 C 0 C 0 s canFam3.chr19 50631866 119 + 53741614 CTGGTTGTGGCTGGCCACTGACCAGCCTGAGAACT-TCCCTTTTGCCCTTCAATTTG-AATAGTCAAGgtttttttttgttttgttttgtttttttgttttgttttgttttgttttTTTGA i canFam3.chr19 C 0 I 176 e papAnu2.chr12 11289018 1088 + 104110932 I a score=1729505.000000 s hg38.chr2_GL582966v2_alt 44577 576 + 96131 CAAATTTGGC-AATTCTTCCTTTGAAGGCCCCAACAAATGCTAC-----------------------------TCTGC-AAACTGAGAAGTTGTA-GGTAGGATCTCTGCAAGATAGTCTAGATTGGCTGC-TTTTCTTT---------CCTAAGACTACCT-GATATCACAGTAGGTTATTCTATTTGAACTTTCCAGCAGAGCCAATTAATTCTGGCTTCCTG-GAGGAGACAGTGGTATTGAAATGTGAGCTTTTG-----------CAGCTCTAG-------TCTTGGATCCAGGGCTACCCTGTCTTCTGACCTCAGATTTGGAGATTCTTGAATTCAGAGGATCTGAGCCTTAGAGTGTTCT-ATCAAACAATGCCAGTGTGTTTCTTT-ATTTGGCTGTTTCTATTAATGAAACAGTGACATAATTAATTCATAATTAGGATGCCTTAGAGGTCTGTTTCCTTTTTAATCAATCACTAGAGAGAATATGACTCTAGTAAAGCCCCAGGATATTCCTCAACTAAAGCAAA-ATGAATGTAAAGAATT-TAGG-CATCTCTGCAAGTTGGAGTAGCT--------------------TGGAACCAGTTTACTTCAGGGATGCATCTTGAGAGGGGAGGTTTTACATAGTTCTCTTTTT s panTro4.chr2B 153157312 576 + 247518478 CAAATTTGGC-AATTCTTCCTTTGAAGGCCCCAACAAATGCTAC-----------------------------TCTGC-AAACTGAGAAGTTGTA-GGTAGGGTCTTTGCAAGATAGTCTAGATTGGCTGC-TTTTCTTT---------CCTAAGACTATCT-GATATCACAGTAGGTTATTCTATTTGAACTTCCCAGCAGAGCCAATTAATTCTGGCTTCCTG-GAGGAGACAGTGGTATTGAAATGTGAGCTTTTG-----------CAGCTCTAG-------TCTTGGATCCAGGGCTACCCTGTCTTCTGACCTCAGATTCGGAGATTCTTGAATTCAGAGGATCTGAGCCTTAGAGTGTTCT-ATCAAACAATGCCAGTGTGTTTCTTT-ATTTGGCTGTTTCTATTAATGAAACAATGACATAATTAATTCATAATTAGGATGCCTTAGAGGTCTGTTTCCTTTTTAATCAATCACTAGAGAGAATATGACTCTAGTAAAGCCCCAGGATATTCCTCAACTAAAGCAAA-ATGAATGTAAAGAATT-TAGG-TATCTCTGCAAGTTGGAGTAGCT--------------------TGGAACCAGTTTACTTCAGGGATGCATCTTGAGAGGGGAGGTTTTACATAGTTATCTTTTT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38363766 579 + 135000294 CAAATTTGGCAAATTCTTCCTTTGAAGGCCCCAACAAATGCTAC-----------------------------TCTGCAAAACTGAGAAGTTGTA-GGTAGGATCTCTGCAAGATAGTCTAGATTGTCTGC-TTTTCTTT---------CCTAAGACTACCTCGATATCACAGTAGATTATTCTATTTGAACTTTCCAGCAGAGCCAATTAATTCTGGTTTCCTG-GGGGAGACAGTGGTATTGAAATGTGAGCTTTTG-----------CAGCTCTAG-------TCTTGGATCCAGGGCTACCCTGTCTTCTGACCTCAGATTCAGAGGTTCTTGAATTCAGAGGATCCGAGCCTTACAGTGTTCT-ATCAAACAATGCCAGTGTGTTTCTTT-ATTTGGCTGTTTCTATTAATGAAACAGTGACATAATTAATTCATAATTAGGATGCCTTAGAGGTCTGTTTCCTTTTTAATCAATCACTAGAGAGACTATGACTCTAGTAAAGCCCCAGGATATTCCTCAACTAAAGCAAA-ATGAATGTAAAGAATT-TAGG-CATCTCTGCAAGTTGGAGTAGCT--------------------TGGAACCGGTTTACTTCAGGGATGCATCTTGAGAGGGGAGGTTTTACATAGTTCTCTTTTT i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82316376 576 - 85365473 CACATTTGGC-AATTCTTCCTTTGAAGGCCCCAACAAATGCTAC-----------------------------TCTGC-AAACTGAGAAATTGTA-GGTAGGATCTCTGCAAGATAGTCTAGATTGGCTGA-TTTACTTT---------CCTAAGACTAGGT-GATATCACAGCAGATTATTCTATTTGAACTTTCCAGCAGAGCCAATTAATTCTGGCTTCCTG-GGGGAGACAGTGGTATTGAGATGTGAGCTTTTG-----------CAACTCTAG-------TCTTGGATCCAGGGCTACCCTGTCTTCTGACCTCAGATTCAGAGATTCTTGAATTCAGAGGATCTGAGCCTTACAGTGTTCT-ATCAAACAATGCCAGTGTGTTTCTTT-ATTTGGCTGTTTGTATTAATGAAACAGTGACATAATTGATTCATAATTAGGATGCCTTAGAGATCTGTTTCCTTTTTAATCAATCACTAGAGAGGATATGACTCTAGTAAAGCCCCAGAATATTCCTCCACTAAAGCAAA-ATGAATGTAAAGAATT-CAGG-CATCTCTGCACATTGGAGTAGCT--------------------TGGAACCAGTTTACTTCAGGGAGGCATCTTGAGAGGGAAGGTTTTACATAGTTCTCTTTTT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11927647 575 + 106825570 CAAATTTGGC-AATTCTTCCTTCGAAGGCCCCAACAAATGCTGC-----------------------------TCTGC-AGACTGAGAAGTCGTA-GGTAGGATCTCTGCAAGATAGTCTAGATTGGCTGC-ATTTCTTT---------CCTAAGACTACCT-GATATCACAGTAGATTATTCTATTTGAACTTTCCAGCAGAGCCAATTAATTCTGGCTT-CTG-GGGGAGACAGTGGTATTGAAATGTGAGCTTTTG-----------CAGCGCTAG-------TCTTGGATCCAGGGCTACCCTGTCTTCTGACCTCAGATTCAGAGATTCTTGAATTCAGAGGATTTGAGCCTTACAGTGTTCT-ATCGAACAATGCCAGTGTGTTTCTTT-ACTTGGCTGTTTCCATTAATGAAACAGTGACATAATTAATTCATAATTAGGATGCCTTAGAGGTCTGTTTCCTTTTTAATCAATCACTGGAGAGAATATGACTCTAGTAAAGCCCCAGGATATTCCTCAACTAAAGCAAA-ATGAATGTAAAGAATT-CAGG-CATCTCTGCATGTTGGAGTAGCT--------------------TGGAACCGGTTTACTTCAGGGATGCATCTTGAGAGGGGAGATTTTACACAGTTCTCTTTTT i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37631857 575 + 132586672 CAAATTTGGC-AATTCTTCCTTCGAAGGCCCCAACAAATGCTAC-----------------------------TCTGC-AGACTGAGAAGTCGTA-GGTAGGATCTCTGCAAGATAGTCTAGATTGGCTGC-ATTTCTTT---------CCTAAGACTACCT-GATATCACAGTAGATTATTCTATTTGAACTTTCCAGCAGAGCCAATTAATTCTGGCTT-CTG-GGGGAGACAGTGGTATTGAAATGTGAGCTTTTG-----------CAGCGCTAG-------TCTTGGATCCAGGGCTACCCTGTCTTCTGACCTCAGATTCAGAGATTCTTGAATTCAGAGGATTTGAGCCTTACAGTGTTCT-ATCGAACAATGCCAGTGTGTTTCTTT-ACTTGGCTGTTTCCATTAATGAAACAGTGACATAATTAATTCATAATTAGGATGCCTTAGAGGTCTGTTTCCTTTTTAATCAATCACTAGAGAGAATATGACTCTAGTAAAGCCCCAGGATATTCCTCAACTAAAGCAAA-ATGAATGTAAAGAATT-CAGG-CATCTCTGCATGTTGGAGTAGCT--------------------TGGAACCGGTTTACTTCAGGGATGCATCTTGAGAGGGGAGATTTTACACAGTTCTCTTTTT i macFas5.chr12 C 0 C 0 s chlSab2.chr10 34386720 575 + 128595539 CAAATTTGGC-AATTCTTCCTTTGAAGGCCCCAACAAATGCTAC-----------------------------TCTGC-AGACTGAGAAGTCGTA-GGTAGGATCTCTGCAAGATAGTCTAGATTGGCTGC-ATTTCTTT---------CCTAAGACTACCT-GATATCACAGTAGATTATTCTATTTGAACTTTCCAGCAGAGCCAATTAATTCTGGCTT-CTG-GGGGAGACAGTGGTATTGAAATGTGAGCTTTTG-----------CAGCGCTAG-------TCTTGGATCCAGGGCTACCCTGTCTTCTGACCTCAGATTCAGAGATTCTTGAATTCAGAGGATTTGAGCCTTACAGTGTTCT-ATCGAACAATGCCAGTGTGTTTCTTT-ACTTGGCTGTTTCTATTAATGAAACAGTGACATAATTAATTCATAATTAGGATGCCTTAGAGGTCTGTTTCCTTTTTAATCAATCACTAGAGAGAATATGACTCTAGTAAAGCCCCAGGATATTCCTCAACTAAAGCAAA-ATGAATGTAAAGAATT-CAGG-CATCTCTGCATGTTGGAGTAGCT--------------------TGGAACTGGTTTACTTCAGGGATGCATCTTGAGAGGGGAGATTTTACACAGTTCTCTTTTT i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87873915 577 - 158406734 CAAATTTGGC-AATTCTTCCTGTGAAGGCCCCAGCAAATGCTAC-----------------------------TCTGC-GGACTGAGAAGTTGTAGGGTAGGATCTCTGCAAGATGATCAAGATTGGCTGC-TTTTCTTT---------CCTAAGGCTACTT-GATATCACAGTAGATTATTCTATTTGAACTTTCCAGCAGAGCCAATTAATTCTGGCTTCCTG-GGAGAGACAGGGGTATTGAAATGTGAGCTTTTA-----------CAGCACTGG-------TCTTGGATTCAGGGCTACCCTCTCTTCTGGCCTCAGATTCAGAGATTCTCGAATTCAGAGGATTTGAGCCTTACAGTATTCT-ATCAAACAATGCCAGTGTGTTTCTTT-ATTTGGCTGTTTCTATTAATGAAACAGTGACATAATTAATTCATAATTAGGATGCCTTAGAGGTCTGTTTCCCTCTTAATCAATCACTAGAGAGAAGATGACTCTAGTAAAGCCCCAGGATATTCCTCAATTAAAGCAAA-ATGACTGTAAAGAATT-CAGG-CATCTCTGCTCGTTGGATTATCT--------------------TGGAACCAGTTTACTTCAGGGATGCATCTTGAGAGAGGAGGTTTTACATAGTTCTCTTTTT i calJac3.chr6 C 0 C 0 s mm10.chr2 49722224 557 + 182113224 CAAATTG----AGTGCTTCCTTTGAAGG-CCCAGCAGACCCTGC-----------------------------TCGGC-GGATTGAGAAGTGGTG-TG-GGGAT-------------TCCAGATTAGCTGC-CTTTTTTTTTTTTTTTCCCTGAGACTACCT-GACATCACAAGAAATTATTCTATTTGAACTCTCCTGCAGAGCCAATTAATTTGGGCTTCCTGCGGGGAGAGTGCGGTGGTG------GAGCTCCTGATCTCGAAGGACCGATCCAG-------TCCTTGAGTCCAGGTTGCCCTAACTTC---CACCGGCTCCCAAGAGTCTGAGTTTGGGAGGAGTGGAGTCCCACAGCGTTCTGGTTAAACAGTGGCGCTGTGTTCCTTG-CTTTGGCTGTTTCTACTAATGACACAGTAACATAATTAATTGGTAATTAGGGTGCCTCAAAGGTCTATTTCCCTTTGAATCGGTGACTAGAGAGAATATGATTCTAGTAAAGCACTAATGTATTTCTCCACAAAAGGAAACATGTATGCAGGAGCTCGCAGG-CAGTGCTG-GGGTTGGAGCAGTTGGATGAGCTC-TGTGGCCAGTGCAGCCGTTTGATTTCTGCCATGCA----------------------------------T i mm10.chr2 C 0 C 0 s canFam3.chr19 50632161 630 + 53741614 CAAGCTCGGT-AACGCTTCCTTCAGAGGCCTCTGCAAACACTGCTCTGAAGACCGAGAAGTAGTAGGTGCCAGTCTGC-AGACTGAGAAGTGGTA-TGCAGGGTGTCCGCGCGATATTCTGGACTGGCTGCTTTTTCTTT---------CCTGGATCTACTT-GACATCATAAGAAATTAGTGTAGTTGAAGTCTCCAGGTGAGCCAATTAATTGTGACCTCCTA-GGGGAGAGGATGATAGTAGAACGTGTGTTTGTG-----------TTATGTCAGTCAGAGCTCCCGGGTCCAGGGCTACCCTGGTTTTCTGCTTCAGATTCAGAGGGTCTCGGATTCAGACGATTACGGTCCTGGAGTGTTCC-CCTCAATAGTG---ATGAATTTCCTTGATTTGACTATTTTTCCTAATGGAATGATATCCTAATTAATTGGTAATTAGGATGCCTCAGAGGTCTGTTTGCCTGTGAATCAACCACTAGATAGAATCTGATTCCAACAAAACCCCAGAATATTCCCCAAAAAAGGGAAA-GTGTCTGCAAAAAATT-CTGGATGTCCCTGCAAGCTGTATTAGTG--AAGAGTTTGTGTGGTTGGTGGAACCCGAGTATTTAAGTGATGCATCACGAGACAGGGAGTAGTATATAGTCTTCTTCCT i canFam3.chr19 I 176 I 200 e papAnu2.chr12 11289018 1088 + 104110932 I a score=1296388.000000 s hg38.chr2_GL582966v2_alt 45153 377 + 96131 TCTTAGACTAGTTTTGGCCAATTAACTAAGACCTTTCTTGTCAAATAGAAGGAACACAAACTCTAC--CCAC--ACTACAGCCCTTTATTGTGTCTTCTGTGTATTTTTCACCAGGACTGATTATTTTTGGTACTCTTCCTGGAGGGTTGCATACTCAATTTCTTTAATCCCCA--ACTCTGCTCGGCTATGTTTT-GCAGGAGAAGCTGTGCCTGAGGATGAACAGATCAGTGCCAAGGACCAGAAGAACCTGGAGCCTTGTGATAACACCCCCATCATAGACAATATTGCTCCTGTTGTTGCTGGCATCTCTACAGAGGAGAAAGAGAAGTACGATGAGGAGATCTCCAGTCTCTACAGACAACTGGATGACAAGGTCTGTG s panTro4.chr2B 153157888 377 + 247518478 TCTTAGACTAGTTTTGGCCAATTAACTAAGACCTTTCTTGTCAAATAGAAGGAACACAAACTCTAA--CCAC--ACTATAGCCCTTTATTGTGTCTTCTGTGTATTTTTCACCAGGACTGATTATTTTTGGTACTCTTCCTGGAGGGTTGCATACTCAATTTCTTTAATCCCCA--ACTCTGCTCGGCTATGTTTT-GCAGGAGAAGCTGTGCCTGAGGATGAACAGATCAGTGCCAAGGACCAGAAGAACCTGGAGCCTTGTGATAACACCCCCATCATAGACAATATTGCTCCTGTTGTTGCTGGCATCTCTACAGAGGAGAAAGAGAAGTATGATGAGGAGATCTCCAGTCTCTACAGACAACTGGATGACAAGGTCTGTG i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38364345 377 + 135000294 TCTTAGAATAGTTTTGGCCAATTAACTAAGACCTTTCTTGTCAAATAGAAAGAACACAAACTCTAA--CCAC--ACTACAGCCCTTCATTATGTATTCTGTGTATTTTTCACCAGGACTGATTATTTTTAGTACTCTTCCTGGAGGGTTGCATACTCAATTTCTTTAATCCCCA--ACTCTGCTTGGCTATGTTTT-GCAGGAGAAGCTGTGCCTGAGGATGAGCAGATCAGTGCTAAGGACCAGAAGAACCTGGAGCCTTGTGATAACACCCCCATCATAGACAATATTGCTCCTGTTGTTGCTGGCATCTCTACAGAGGAGAAAGAGAAGTACGATGAGGAGATCTCCAGTCTCTACAGACAACTGGATGACAAGGTCTGTG i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82316952 377 - 85365473 TCGTAGACTAGTTTTGGCCAATTAACTAAGACCTTTCTTGTCAAATAGAAAGAACACAAACTCTAA--CCAC--ACTACAGCCTTTTATTGTGTCTTCTGTGTATTTTTCACCAGGACTGATTATTTTTGGTACTCTTCCTGGAGGGTTGCATACTCAATTTCTTTAATCCCCA--ATTCTGCTCGGCTATGTTTT-GCAGGAGAAGCTGTGCCTGAGGATGAACAGATCAGTGCTAAGGACCAGAAGAATCTGGAGCCTTGTGATAACACCCCCATCATAGACAATATTGCTCCTGTTGTTGCTGGCATCTCTACAGAGGAGAAAGAGAAGTACGATGAGGAGATCTCCAGTCTCTACAGACAACTGGATGACAAGGTCTGTG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11928222 377 + 106825570 TCTTAGACTTGTTTTGGCCAATTCACTAAGACCTTTCTTATCAAATAGAAAGAACACAAACTGTAA--CCAC--ACAACAACCCTTTATTGTGTCCTCTGTGTATTTTTCACCAGGACTGGTTATTTTTAGTACTCTTCCTGGAGGGTTTCATACTCAATTTCTTTAATCCCCA--ACTCTGCTCGGCTATGTTTT-GCAGGAGAAGCTGTGCCTGAGGATGAACAGATCAGTGCCAAGGACCAGAAGAACCTGGAGCCTTGTGATAACACCCCCATCATAGACAATATTGCTCCTGTTGTTGCTGGCATCTCTACAGAGGAGAAAGAGAAGTATGATGAAGAGATCTCCAGTCTCTACAGACAACTGGATGACAAGGTCTGTG i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37632432 377 + 132586672 TCTTAGACTTGTTTTGGCCAATTCACTAAGACCTTTCTTATCAAATAGAAAGAACACAAACTGTAA--CCAC--ACAACAACCCTTTATTGTGTCCTCTGTGTATTTTTCACCAGGACTGGTTATTTTTAGTACTCTTCCTGGAGGGTTTCATACTCAATTTCTTTAATCCCCA--ACTCAGCTCGGCTATGTTTT-GCAGGAGAAGCTGTGCCTGAGGATGAACAGATCAGTGCCAAGGACCAGAAGAACCTGGAGCCTTGTGATAACACCCCCATCATAGACAATATTGCTCCTGTTGTTGCTGGCATCTCTACAGAGGAGAAAGAGAAGTATGATGAAGAGATCTCCAGTCTCTACAGACAACTGGATGACAAGGTCTGTG i macFas5.chr12 C 0 C 0 s chlSab2.chr10 34387295 374 + 128595539 TCTTAGACTTGTTTTGGCCAATTCACTAAGACCTTTCTTATCAAATAGAAAGAACACAAACTGTAA--CCAC-----ACAACCCTTTATTGTGTCCTCTGTGTATTTTTCACCAGGACTGGTTATTTTTAGTACTCTTCCTGGAGGGTTTCATACTCAATTTCTTTAATCTCCA--ACTCTGCTCGGCTATGTTTT-GCAGGAGAAGCTGTGCCTGAGGATGAACAGATCAGTGCCAAGGACCAGAAGAACCTGGAGCCTTGTGATAACACCCCCATCATAGACAATATTGCTCCTGTTGTTGCTGGCATCTCTACAGAGGAGAAAGAGAAGTATGATGAAGAGATCTCCAGTCTCTACAGACAACTGGATGACAAGGTCTGTG i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87874492 376 - 158406734 TCTTAGACTAGTTTCGGTCAGTTAACTAAGACCTTTCTTGTCAAATAGAAAGAACACAAACTCTAA--ACAC--AAAACAGTCCTTTATTGTGTCCTCTGTGTATTTTTCACCAGGACTGATTATTTTTGA-ACACTTCCTGGAGGGTTGCATGCTCAGTTTCTTTAATCCCCA--ACTCCTCTTGGCTATGTTTT-TTAGGAGAAGCTGTGCCTGAGGATGAACAGATCAGTGCCAAGGACCAGAAGAACCTGGAACCTTGTGATAACACCCCTATCATTGACAATATTGCTCCTGTTGTGGCTGGCATTTCTACAGAGGATAAAGAGAAGTACGATGAGGAGATCTCCAGTCTCTACAGACAACTGGATGACAAGGTCCGTG i calJac3.chr6 C 0 C 0 s mm10.chr2 49722781 375 + 182113224 TCTTGGTCTAACAGTGGTCGATTAGCTAC-ACCTTTCTTCCCAAGCAGAAAGA--ATGGACTGTAGCTCTAC--ACAAGGACTCTCTGTTGTGTCTGCTGTGTCTTTGTCACTGGGAGCGGCAATTCTTAGAGCTCTTCCTGGAGGGTTGCATGCTTGATTTCTTTAGTTCTCAGCATCCTGCTT-GCTGTATTTTCTCAGGGGAAGCTGTACCCGAGGACGAACAGATCAGCGCCAAGGACCAGAAGAGCCTAGAGCCCTGTGACAACACACCCATCATAGACAACATCACGCCTGTTGTGGACGGCATCTCTGCCGAG---AAGGAGAAGTATGACGAGGAGATCACCAGTTTGTACCGACAGCTCGATGATAAGGTCTGTG i mm10.chr2 C 0 I 667 s canFam3.chr19 50632991 373 + 53741614 CCTTAGACTAGTTTTGATCAATTAACTACCACCTTCCTTGCCAAATAAAAAGAACACAAGCTCTGA--CTTTCTACAACAGCTCTCTATTGTGTCCTCTGTGTCTTTTC--ATGGGAGTGGGTATTTTGGGAACTCTTCCTGTAGGGTTACATGCTGAATTTCTTCAATCCCCA--ACCCCTCTTG----TGCTTT-GCAGGAGAAGCTGTGCCTGAGGATGAACAGATCAATGCTAAGGACCAGAAGACCTTGGAGCCCTGTGATAACACCCCCATCATAGATAATATTGCTCCTGTTGTTGCTGGCATCTCTGCAGAGGAGAAAGAGAAGTATGATGAGGAGATCTCCAGTCTCTACAGACAGCTGGATGATAAGGTCTGTA i canFam3.chr19 I 200 C 0 e papAnu2.chr12 11289018 1088 + 104110932 I a score=160446.000000 s hg38.chr2_GL582966v2_alt 45530 58 + 96131 GCCAGAGATTCATAGTTCTCATTCTGCTACAAAGATGAAAGATGGCA---GGTCC-------------------CAGCTC s panTro4.chr2B 153158265 58 + 247518478 GCCAGAGATTCATAGTTCTCATTCTGCTACAAAGATGAAAGATGGCA---GGTCC-------------------CAGCTC i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38364722 58 + 135000294 GCCAGGGATTCATAGTTCTCATTCTGCTACAAAGATGATAGATGGCA---GGTCC-------------------CAGCTC i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82317329 58 - 85365473 GCCAGAGATTCATAGTTCTCATTCTGCTACAAAGATGAAAGATGGCA---GGTCC-------------------CAGCTC i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11928599 57 + 106825570 GCCAGAGATTTATAGCTCTTACTCCGCTACAAAGATGAAAGAGGGC----GGTCC-------------------CAGCTC i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37632809 57 + 132586672 GCCAGAGATTTATAGTTCTTACTCCGCTACAAAGATGAAAGAGGGC----GGTCC-------------------CAGCTC i macFas5.chr12 C 0 C 0 s chlSab2.chr10 34387669 57 + 128595539 GCCAGAGATTTATAGTTCTCACTCCGCTACAAAGATGAAAGAGGGC----GGTCC-------------------CAGCTC i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87874868 58 - 158406734 GCCAGAGATTTACAGTTCTCACCCTGCTACACAGATGAAAGATGGCA---GGTCC-------------------CAGCTC i calJac3.chr6 C 0 C 0 s mm10.chr2 49723823 61 + 182113224 GCCAGAGACTGGTAGTCTTCACTCTGGTACAAAGACTGAAGGTGGCACTTGCAGT-------------------CAACCC i mm10.chr2 I 667 C 0 s canFam3.chr19 50633364 76 + 53741614 GCCAGAGA-TGATAGTCTTCACTCCGGTACCTAGGCGGAAGCTGGCG---GGTCCTAGACTTACTGGCCAGAAGCAGCTT i canFam3.chr19 C 0 I 5 e papAnu2.chr12 11289018 1088 + 104110932 I a score=846876.000000 s hg38.chr2_GL582966v2_alt 45588 259 + 96131 CCTATGGGGCTGATGTAGGGCTACAGCCCGATCTTTGTTTCTGGTTTCCTAATACCTACCCTAGCACTTTGATGGTGCAGATTCAGGGAGTTTGATTCATGTGGAATAGAAATGTTAAAGGGAACTTGACTGAAAAAGC-AGTGTGTTGGC----------------------------------CTAGATAGACAGGCGGGTGCTATTTAGAGTCTTGTCTTCTAGAAATTGGACT-GGGCTGATTACTGCATGAAAGGTGGG--GTGTGTGAGTGTCTAT-GATCTTTAAGTCTCC s panTro4.chr2B 153158323 259 + 247518478 CCTATGGGACTGATGTAGGGCTACAGCCCGATCTTTGTTTCTGGTTTCCTAATACCTACCCTAGCACTTTGATGGTGCAGATTCAGGGAGTTTGATTCATGTGGAATAGAAATGTTAAAGGGAACTTGACTGAAAAAGC-AGTGTGTTGGC----------------------------------CTAGATAGACAGGCGGGTGCTATTTAGAGTCTTGTCTTCTAGAAATTGGACT-GGGCTGATTACTGCATGAAAGGTGGG--GTGTGTGAGTGTCTAT-GATCTTTAAGTCTCC i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38364780 293 + 135000294 CCTATGGGGCTGATGTAGGGCTACAGCCCGATCTTTGTTTCTGGTTTCCTAATACCTACCCTAGCACTTTGATGTTGCAGATTCAGGGAGCTTGATTCATGTGGAATGGAAATGTTATAGGGAACTTGACTGAAAAAGC-AGTGTGTTGGCCTAGATAGACAGGCAGGTACTATTTAGAGTCTTGCTAGATAGACAGGCAGGTACTATTTAGAGTCTTGCCTTCTAGAAATTGGACT-GGGCTGATTACTACATGAAAGGTGGG--GTGTGTGAGTGTCTGT-GATCTTTAAGTCTCC i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82317387 259 - 85365473 GCTATGGGGCTGATGTAGGGCTACAGCCTGATCTTTGTTTGTGGTTTCCTAATACCTACCCTAGCACTTTGATTGTGCAGATTCAGGGAGCTTGATTCATGTGGAATGGAAATGTTAAAGGGAACTTGACTGAAAAAGC-AGTGTGTTGGC----------------------------------CTAGATAGACAGGCAGGTGCTATTTAGAGTCTTGTCTTCTAGAAACTGGACT-GGGCTGATTACTGCATGAAAGGTGGG--GTGTGTGAGTGTCTGT-GATCTTTAAGTCTCC i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11928656 261 + 106825570 CCCGTGGAGCTGATGTAGGGCTACAGCCCGATCTTTATGTCTGGTTTTCTAATACCTACCCTAGCACTTTAATGGTGCAGACTCAGGGAGCTTGATTCATGTGGATTGGAAATGTTAAAGGGAACTTGACTGAAAGAGC-AGTGTGTTGGC----------------------------------CTAGACAGACAGGCAGTTGTTACTTAGAGTCTTGTCTTCTAGAGATTGGACT-GGGCTGATTACTGCATGAAAGGCGGGGTGTGTGTGAGTGTCTGT-GATCTTTAAGTCTCC i rheMac3.chr12 C 0 I 49 s macFas5.chr12 37632866 259 + 132586672 CCCGTGGAGCTGATGTAGGGCTACAGCCCGATCTTTATGTCTGGTTTTCTAATACCTACCCTAGCACTTTAATGGTGCAGACTCAGGGAGCTTGATTCATGTGGATTGGAAATGTTAAAGGGAACTTGACTGAAAGAGC-AGTGTGTTGGC----------------------------------CTAGACAGACAGGCAGTTGTTACTTAGAGTCTTGTCTTCTAGAGATTGGACT-GGGCTGATTACTGCATGAAAGGCGGG--GTGTGTGAGTGTCTGT-GATCTTTAAGTCTCC i macFas5.chr12 C 0 I 4 s papAnu2.chr12 11290106 259 + 104110932 CCTGTGGAGCTGATGTAGGGCTACAGCCCGATCTTTATGTCTGGTTTTCTAATACCTACCCTAGCACTTTAATGGTGCAGACTCAGGGAGCTTGATTCATGTGGACTGGAAATGTTAAAGGGAACTTGACTGAAAGAGC-AGTGTGTTGGC----------------------------------CTAGTCAGACAGGCAGTTGTTACTTAGAGTCTCGTCTTCTAGAGATTGGACT-AGGCTGATTACTGCATGAAAGGCGGG--GTGTGTGAGTGTCTGT-GATCTTTaagtctcc i papAnu2.chr12 I 1088 I 4 s chlSab2.chr10 34387726 259 + 128595539 CCTGTGGAGCTGATGTAGGGCTACAGCCCGATCTTTATGTCTGGTTTTCTAATACCTACTCTAGCACTTTAATGGTGCAGACTCAGGGAGCTTGATTCATGTGGATTGGAAATGTTAAAGGGAACTTGACTGAAAGAGC-AGTGTGTTGGC----------------------------------CTAGACAGACAGGCAGTTGTTACTTAGAGTCTTGTCTTCTAGAGATTGGACT-GGGCTGATTACTGCATGAAAGGCGGG--GTGTGTGAGTGTCTGT-GATCTTTAAGTCTCC i chlSab2.chr10 C 0 I 4 s calJac3.chr6 87874926 256 - 158406734 CCTGTGGAGCTGATGTAGGGCTGCAGCTCGATCTTTATGTCTGGTTTCCTAATACCTACCCTAGCGCTTTGTTGGTGCAGACTCTGGGAGCTTGATTCATGTGGAATGGACATGTTAAGGGGAACTTGATTAAAAGAGC-AGAGTGTTGGC----------------------------------CTAGATAGACAGGCAGATGCTATTTATAGTTTTGTCTTCTAGACATTGGACT-GGGCTGATTACTG-ATGAAAGACGGG--GTGTGT--GTGTCCGT-GATTTTTAAGGTTCC i calJac3.chr6 C 0 I 4 s mm10.chr2 49723884 208 + 182113224 --CCTGGAGCTGAGGTA-GGCTGCAGACCATTATTGATGTATATCTTCCTGATATCTGTTTT----CT--------------------AGCTTGATTACTACAGAAAGTTATAATCAAAAAGAGC-----TGGGGGAGG-GGAGAGTTGGT----------------------------------CTAGATAGACA----------------AGACCTCACTTCCAGAAAT----CT-GGGTAGATTATTGCAGAAGAGGACGG--CAGTGTGAGAGTATGTGGGTGTGTTTGTCTCC i mm10.chr2 C 0 I 2 s canFam3.chr19 50633445 211 + 53741614 CCCATGGAGCTGCTGTAGGGCTGCAGACTGACGTTTATGTCTGTCTCCTTAATATCTGCCCT-GCTCTTGATT-------------GGAACTTGACTCGTGTGGAATGGAAACTTTCATGGAAGTTTGATCGGAAGACCTGGAGAGTTGGT----------------------------------CTAGATAGA-----------------GAGTCTTCAC-TCTGGACATGGGACTGGGGCTGATCACTGCATGATCC-------TTGTGTAATTGTCTCT-------------TC- i canFam3.chr19 I 5 C 0 a score=33459.000000 s hg38.chr2_GL582966v2_alt 45847 20 + 96131 CTTTCTTCTCTGGGCCTATC s panTro4.chr2B 153158582 20 + 247518478 CTTTCTTCTCTGGGCCTATC i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38365073 20 + 135000294 CTTTCTTCTCTGGGCCTATC i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82317646 20 - 85365473 CTTTCTTCTCTGGGCCTATC i nomLeu3.chr20 C 0 C 0 s macFas5.chr12 37633129 9 + 132586672 CTTTCTTCT----------- i macFas5.chr12 I 4 C 0 s papAnu2.chr12 11290369 9 + 104110932 ctttcttct----------- i papAnu2.chr12 I 4 C 0 s chlSab2.chr10 34387989 9 + 128595539 CTTTCTTCT----------- i chlSab2.chr10 I 4 C 0 s calJac3.chr6 87875186 20 - 158406734 CTTTCTTCTCTGGGCCTGTT i calJac3.chr6 I 4 C 0 s mm10.chr2 49724094 20 + 182113224 CTTCCTTCTCCGTGCCTTTC i mm10.chr2 I 2 I 1 s canFam3.chr19 50633656 20 + 53741614 TATTTTTCTCTGGGCCTGTG i canFam3.chr19 C 0 C 0 e rheMac3.chr12 11928917 49 + 106825570 I a score=5508972.000000 s hg38.chr2_GL582966v2_alt 45867 1514 + 96131 CTTCACCTCTTGGAAACTCCAGCAGTAGC--CTCAGC--TAGGGGCAAGGGTTGTGACTCCCAGAATTCAAGCATGTACTTTAATCATATAACCATAAGGCCCTGGGATGAGAAATCGATAGCAG-----TGTGGTCTGATGGCTTCACC-TAATTGGTGAAGCTCTTTTCACGGGTATA-TTCTTGAATGAAGTAGTTTGTACATGCTAATTGGGGATGTCCAATTTTATGACAAGCTTTTGGGACTCAAATAGTCATGTAAATGCACAAGTTGGCATAGAGGAAAAGAGGCCTTGGAGAACA--CTGGG-------AGAATCAATTA--------AAGGTTGGGTTAGGAATCCCAGAGGCATGAGAA-TTGAATTGATGTTTTATATGATCTTGGCATGTTGCCCTTGGAATATTCTAAATCCTTTCAG-----TTGATTTCATCAGGGTTGCTGATATTTTTAGCCTGATTTAATCTTTTCTATTGTGGTTCAGCTCAGAGTGCT-TAGGGACACCTCTGGCTTGTATGAAGCAGCTTTGTTATGTTAACCTTGCCATTAATCTTACAGGCTTCTCTCTTTGAGGTAAAGCTCAGAGACTGGTATGACCTTTGCAAGCTGAATGTGACTGGTTGCCTTAAGGAAGCTAGTTCTGCTTGTTTGTGATTCCAAGAGCTTGCACTATAACCAAAGCTTTATTCTGGGGTCATCCTACTCTTCTGAAAACACATTTAATAAAATATTCGCACCCAC-GAGA--TGGGTTACTTGCCCTTTAGGC----TCCACGCATACCGTTAT-CTTCCATTTCTATCTATGT-----------ATT-TTATGCA-------AAACAAAGAGAAAAAGGAGATCAATAGTAAGTTAACAGTATATG----C-AATTTCTTGATTTCTCCAAGGAATTGCTATTG-TTTAAACAGTAAAGAAGATTAGACCATATGCATTTTTTTTCCTCATTTTAGAACCAATGGGCTCATTTTTAGTAATCGC-AGAGAATCCTGGGTGAGAGGGTGAGAAGCTGTTTCTGTGCTCAGTTCTCTATGAATAGACGCCTG-CATGG-CGGAATCGGGATCATTTACCTTGGCAGCACAGGGAACTTTCATTGATCCAAGAGAGAGACTTTAGAGTCTCAAATCAGACATACGAAATGTAGTGATTAGGAcagagagatga-------aaatgccatg-tccaaagcattcagttggtagctga-agagctggcttgagagtctccgtctcctgatggtcagcctaggccatt--ttgttatgtcattttcctaCAGCATGTGCTTTGAAGATTCTGTAAGGCCCGCTGTTGGAGGCTAGTATTTGTGGTCCCTCACATGATGATGCTGAGAGACGTGGGAGAGGACTGAGCCTAGAAGCCTCAGCCTTAG-GGGGCACCAGAGCTAATGGTTTGCCCTCAGTGACCCTTCCCAAAGACTGCCTGATTATGTCTTACCAACTGTCATTCTTAGGGGTCCTCCTCTGAAATGTTCTAGGAGGCACTTCCATGTTTCTGTTGATGTAGGTGGTTTGAC-GCTTGAAGAATACATGAGGT s panTro4.chr2B 153158602 1514 + 247518478 CTTCACCTCTTGGAAACTCCAGCAGTAGC--CTCAGC--TAGGGGCAAGGGTTGTGACTCCCAGAATTCAAGCATGTACTTTAATCATATAACCATAAGGCCCTGGGATGAGAAATCGATGGCAG-----TGTGGTCTGATGGCTTCACC-TAATTGGTGAAGCTCTTTTCACGGGTATA-TTCTTGAATGAAGTAGTTTGAACATGCTAATTGGGGATGTCCAATTTTATGACAAGCTTTTGGGACTCAAATAGTCATGTAAATGCACAAGTTGGCATAGAGGAAAAGAGGCCTTGGAGAACA--CTGGG-------AGAATCAATTA--------AAGGTTGGGTTAGGAATCCCAGAGGCATGAGAA-TTGAATTGATGTTTTATATGATCTTGGCATGTTGCCCTTGGAATATTCTAAATCCTTTCAG-----TTGATTTCATCAGGGTTGCTGATATTTTTAGCCTGATTTAATCTTTTCTGTTGTGGTTCAGCTCAGAGTGCT-TAGGGACACCTCTGGCTTGTATGAAGCAGCTTTGTTATGTTAACCTTGCCATTAATCTTACAGGCCTCTCTCTCTGAGGTAAAGCTCAGAGTCTGGTATAACCTTTGCAAGCTGAATGTGACTGGTTGCCTTAAGGAAGCTAGTTCTGCTTGTTTGTGATTCCAAGAGCTTGCACTATAACCACAGCTTTATTCTGGGGTCATCCTACTCTTCTGAAAACACATTTAATAAAGTATTCGCACCCAC-GAGA--TGGGTTACTTGCCCTTTAGGC----TCCACGCATACCGTTAT-CTTCCATTTCTATCTATGT-----------ATT-TTATGCA-------AAACAAAGAGAAAAAAGAGATCAATAGTAAGTTAACAGTATATG----C-AATTTCTTGATTTCTCCAAGGAATTGCTATTG-TTTAAACAGTAAAGAAGATTAGACCATATGCATTTTTTTTCCTCATTTTAGAACCGATGGGCTCATTTTTAGTAATCGC-AGAGAATCCTGGGTGAGAGGGTGAGAAGCTGTTTCTGTGCTCAGTTCTCTATGAATAGACGCCTG-CATGG-CGGAATCGGGATCATTTACCTTGGCAGCACAGGGAACTTTCATTGATCCAAGAGAGAGACTTTAGAGTCTCAAATCAGACATACGAAATGTAGTGATTAGGAcagagagatga-------aaatgccatg-tccaaagcattcagttggtagctga-agagctggcttgagagtctccgtctcctgatggtcagtctaggccatt--ttgttatgtcattttcctaCAGCATGTGCTTTGAAGATTCTGTAAGGCCCACTGTTGGAGGCTAGTATTTGTGGTCCATCACATGATGATGCTGAGAGATGTGGGAGAGGACTGAGCCTAGAAGCCTCAGCCTTAG-GGGGCACCAGAGCTAATGGTTTGCCCTCAGTGACCCTTCCCATAGACTGCCTGATTATGTCTTACCAACTGTCATTCTTAGGGGTCCTCCTCTGAAATGTTCTAGGAGGCACTTCCATGTTTCTGTTGATGTAGGTGGTTTGAC-GCTTGAAGAATACATGAGGT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38365093 1521 + 135000294 CTTCACCTCTTGGAAACTCCAGCAGTAGC--CTCAGC--TAGGGGCAAGGGTTGTGACTCCCAGAATTCAAGCATGTACTTTAATCATATAACCATAAGGCCCTGGGATGAGAAATCCATAGCAG-----TGTGGTCTGATGGCTTCACC-TAATTGGTGAAGCTCTTTTCATGGGTATA-TTCTTGAATGAAGTAGTTTGAACATGCTAATTGGGGATGTCCAATTTTATGACAAGCTTTTGGGACTCAAATAGTCATGTAAATGCACAAGTTGGCATAGAGGAAAAGAGGCCTTGGAGAACA--CTGGG-------AGAATCAATTA--------AAGGTTGGGTTAGGAATCCCAGAGGCATGAGAA-TTGAATTGATGTTTTATATGATCTTGGCATGTTGCCCTTGGAATATTCTAAATCCTTTCAG-----TTCATTTCATCAGGGTTGCTGATATTTTTAGCTTGATTTAATCTTTTCTATTGTGGTTCAGCTCAGAGTGCT-TAGGGACACCTCCGGCTTGTATGAAACAGCTTTGTTATGTTAACCTTGCCATTAATCTTACAGGCCTCTCTCTTTGAGGTAAAGCTCAGAGTCTGGTATAACCTTTGCAAGCTGAATGTGACTGGTTGCCTTAAGGAAGCTAGTTCTGCTTGTTTGTGATTCCAAGAGCTTGCACTATAACCACAGCTTTATTCTGGGGTCATCCTACTCCTCTGAAAACACATTTAATAAAACATTCATACCCAC-GAGA--TGGGTTACTTGCCCTTTAGGC----TCCACACATACCGTTAT-CTTCCATTTCTATCTATGT-----------ATT-TTATGCAAAACCTCAAACAAAGAGAAAAAAGAGATCAATAGTAAGTTAACAGTATATG----C-AATTTCTTGATTTCTCCAAGGAATTGCTATTG-TTTAAACAGTAAAGAAGATTAGACCATATGCATTTTTTTTTCTCATTTTAGAACTGATGGGCTCATTTTTATTAATTGC-AGAGAATCCTGGGTGAGAGGGTGAGAAGCTGTTTCTGTGCTCAGTTCTCTATGAATAGACGCCTG-AATAG-CGGAATCGGGATCATTTACCTTGGCAGCATAAGGAACTTTCATTGATCCAAGAGAGAGACTTTAGGGTCTCAAATCAGACATACGAAATGTAGTGATTAGGAcagagagatga-------aaatgccatg-tccaaagcattcagttggtagctga-agagctggcttgagagtctccgtctcctgacggtcagcctaggccatt--ttgttatgtcattttcctaCAGCATGTGCTTTGAAGATTCTGTAAGGCCCACTGTTCGAGGCTAGTATTTGTGGTCCATCACATGATGATGCTGAGAGATGTGGGAGAGGACTGAGCCTAGAAGCCTCAGCCTTAG-GGGGCACCAGAGCTAATGGTTTGCCCTCAGTGACCCTTCCCATAGACTGCCTGATTATGTTTTACCAACTGTCATTCTTAGGGGTCCTCCTCTGAAATGTTCTAGGAGGCACTTCCATGTTTCTGTTGATGTAGGTGGTTTGAC-GCTTGAAGAATACATGAGGT i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82317666 1523 - 85365473 CTTCACCTCTTGGAAACTCCAGCAGTAGC--CTCAGC--TAGGGGCAAGGGTTGTGAATCCCAGAATTCAAGCATATACTTTAGTCATATAACCATAAGGCCCTGGGATGAGAAATCGATAGCAG-----TGTGGTCTGATGGCTTCACC-TAATTGGTGAAGCTCTTTTCACGGGTATA-TTCTTGAATGAAGTAGTTCGAACATGCTAATTGGGGATGTCCAATTTTATGACAAGCTTTTGGGACTCAAATAGTCATGTAAGTGCACAAGTTGGCATAGAGGAAAAGAGGCCTTGGAGAACACTCTGGG-------AGAATCAATTA--------AAGGTCGGGCTAGGAATCCCAGAGGCATGAGAA-TTGAATTGATGTTTTATATGATCTTGGCATGTTGCCCTTGGAATATTCTAAATCCTTTCAG-----TTCGTTTCATCAGGGTTGCTGATATTTTTAGCCTGATTTAATCTTTTCTATTGTGGTTCAGCTCAGAGTGCT-TAGGGACACCTCTGGCTTGTATGAAACAGCTTTGTTATGTTAACCTTGCCATTAATCTGACAGGCCTCTCTCTTTGAGGTAAAGCTCAGAGTCTGGTATAACCTTTGCAAGCTGAATGTGACTGGTCACCTTAAGGAAGCTAGTTCTGCTTGTTTGTGATTCCAAGAGCTTGCACTGTAACCACAGCTTTATTCTGGGGTCATCCTACTCTTCTGAAAACACATTTAATAAAATATTCACACCCAC-AAGA--TGGGTTACTTGCCCTTTAGGC----TCCGAGCATACCGTTGT-CTTCCGTTTCTATCTATGT-----------ATT-TTATTCAAAACCTCAAATAAAGAGAAAAAAGAGATCAATAGTAAGTTAACAGTGTATG----C-AATTTCTTGATTTCCCCAAGGAATTGCTATTG-TTTAAACAGTAAAGAAGATTAGACCATACGCATTTTTTTTTCTCATTTTAGAACCGATGGGCTCATTTTTAGTAATCGC-AGAGAATCCTGGGTGAGAGGGTGAGAAGCTGTTTCTGTGCTCAGTTCTCTATGAATAGACGCCTG-CATGG-CGGAATCAGGATCATTTACCTTGGCAGCACAAGGAACTTTCACTGATCCAAGAGAGACACTTTAGAGTCTCAAATCAGACATGCGTAATGTAGTGATTAGGACAGAGAGATGA-------AAATGCCATG-TCCAAAGCATTCAGTTGGTAGCTGA-AGAGCTGGCTTGAGAGTCTCCGTCTCTTGATGGTCAGCCTAGGCCATT--TTGTTATGTCATTTTCCTATAGCATGCGCTTTGAAGATTCTGTAAGGCCCACTGTTCGAGGCTAGTATTTGTGGTCCATCGCATGATGATGCTGAGAGATGTGGGAGAGGACTGAGCCTAGAAGCCTCAGTCTTAG-GGGGCACCAGAGCTAATGGTTTGCCCTCAGTGACCCTTCCCATAGAGTGCCTGATTATGTCTTACCAACTGTCATTCTTAGGGGTCCTCCTCTGAAAGGTTCTAGGAGGCACTTCCATGTTTCTGTTGATGTGGGTGGTTTGAC-GCTTAAAGAATACATGAGGT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11928966 1524 + 106825570 CTTCACCTCTTGGAAACTCCAGCAGTAGC--CTCAGC--TAGGGGCAAGGGTGGTGACTCCCAAAATTCAAGCATGTACTTTAATCATATAGCTATAAGGCTCTGGGATGAGAAACAGATAGTAG-----TGTGGTCTGATGGCTTTACC-TAATTGGTGAAGCTCTTTTCACGGGTATA-TTCTTGAATGAAGTAGTTTGAACATGCTAATTAGGGATGTCCAATTTTATGACAAGCTTTTGGGACTCAAATAGTCATGTAAATGCACAAGTTGGCATAGAGGAAAAGAGGCGTTGGAGAACA--CTGGG-------AGAACCAATTA--------AAGGTTGGGTTAGGAATCCCAGAGGCATAAGAA-TTAAATTGATGTTTTATATGATCTTGGCATGTTGCCCTTGGAATATTCTAAATCCTTTCAGTTCACTTCATTTCATCAAGGTTGCTGATATTTTTAGTCTAATTTAATCTTTTCTATTGTGGTTCATCTCAGAGTGCT-TAGGGACACCTCTGGCTTGTGTGAAACAGCTTTGTTATGTTAACATTGCCATTAATCTTACAGGCCTCTCTCTTTGGGGTAAAGCTCAGAGTCTGGTATAACCTTTGCAAGCTGAATGTGACTGGTTGCCTTAAGGAAGGTAGTTCTGCTTGTTTATGATTCCAAGAGCTTGCACTATAACCACAGCGTTATTCTGGGGTCATCCTACCCTTCTGAAAACACATTTAATAAAATATTCACACCCAT-GAGA--TGGGTTACTTGCCCTTTAGGC----TCCAAGCATACCGTTAT-CTTCCATTTCTGTCTATGT-----------ATT-TTATGCAAAGCTTCAAACAAAGAGAAAAAATAGATCAATAGTAAGTTAACAGTATATG----C-AATTTCTTGATTTCTCCAAGGAATTGCTATTG-TTTAAACAGTAAAGAACATTAGACCATATGCATTTTTTT--CTCATTTTAGAACCGATGGGCTCATTTTTAGTAATCGC-AGAGAATCCTGGGTGAGAGGGTGAGAAGCTGTTTCTGTGCTCAGTTCTCTATGAATAGATGCCTG-CATGG-CGGAATCGGGATCATTTACCTCGGCAGCACAAGGAACTTTCATTGATCCGAGAGAGAGACTTTAGAGTCTCAAATCCAGCATACAAAATGTAGTGATTAGGACAGAGAGATGA-------AAATGCCATG-TCCAAGGCATTCAGTTGGTAGCTGA-AGAACTGGCTTGACAGTCTCTGTCTCCTGATGGTCAGCCTAGGCCATT--TCGTTATGTCATTTTCCTACAGCATGTGCTTTGAAAATTCTGTAAGACCCACTGTTCGAGGCTAGTATTTGTGGTCCACCGCACAATGATGCTGAGAGATATGGGAGAGGACTGAGCCTAAAAACCTCAGCCTTAG-GGGGCACCAGAGCTAATGGTTTGCCCTCAGTGACCCTTCCCATAGACTGCCTGATTATGTCTCACCAGCTGTCATTCTTAGGGGTCCTCCTCTGAAATGTTCTAGGAGGCACTTCCATGTTTCTGTTGACGTAGGTGGTTTGAC-ACTTGAAGAATACATGAGGT i rheMac3.chr12 I 49 C 0 s macFas5.chr12 37633138 1524 + 132586672 CTTCACCTCTTGGAAACTCCAGCAGTAGC--CTCAGC--TAGGGGCAAGGGTGGTGACTCCCAAAATTCAAGCATGTACTTTAATCATATAGCTATAAGGCTCTGGGATGAGAAACAGATAGTAG-----TGTGGTCTGATGGCTTTACC-TAATTGGTGAAGCTCTTTTCACGGGTATA-TTCTTGAATGAAGTAGTTTGAACATGCTAATTAGGGATGTCCAATTTTATGACAAGCTTTTGGGACTCAAATAGTCATGTAAATGCACAAGTTGGCATAGAGGAAAAGAGGCGTTGGAGAACA--CTGGG-------AGAACCAATTA--------AAGGTTGGGTTAGGAATCCCAGAGGCATAAGAA-TTAAATTGATGTTTTATATGATCTTGGCATGTTGCCCTTGGAATATTCTAAATCCTTTCAGTTCACTTCATTTCATCAAGGTTGCTGATATTTTTAGTCTAATTTAATCTTTTCTATTGTGGTTCATCTCAGAGTGCT-TAGGGACACCTCTGGCTTGTGTGAAACAGCTTTGTTATGTTAACATTGCCATTAATCTTACAGGCCTCTCTCTTTGGGGTAAAGCTCAGAGTCTGGTATAACCTTTGCAAGCCGAATGTGACTGGTTGCCTTAAGGAAGGTAGTTCTGCTTGTTTATGATTCCAAGAGCTTGCACTATAACCACAGCGTTATTCTGGGGTCATCCTACCCTTCTGAAAACACATTTAATAAAATATTCACACCCAT-GAGA--TGGGTTACTTGCCCTTTAGGC----TCCAAGCATACCGTTAT-CTTCCATTTCTGTCTATGT-----------ATT-TTATGCAAAGCTTCAAACAAAGAGAAAAAATAGATCAATAGTAAGTTAACAGTATATG----C-AATTTCTTGATTTCTCCAAGGAATTGCTATTG-TTTAAACAGTAAAGAACATTAGACCATATGCATTTTTTT--CTCATTTTAGAACCGATGGGCTCATTTTTAGTAATCGC-AGAGAATCCTGGGTGAGAGGGTGAGAAGCTGTTTCTGTGCTCAGTTCTCTATGAATAGACGCCTG-CATGG-CGGAATCGGGATCATTTACCTCGGCAGCACAAGGAACTTTCATTGATCCGAGAGAGAGACTTTAGAGTCTCAAATCCAGCATACAAAATGTAGTGATTAGGACAGAGAGATGA-------AAATGCCATG-TCCAAGGCATTCAGTTGGTAGCTGA-AGAACTGGCTTGACAGTCTCTGTCTCCTGATGGTCAGCCTAGGCCATT--TCGTTATGTCATTTTCCTACAGCATGTGCTTTGAAAATTCTGTAAGACCCACTGTTCGAGGCTAGTATTTGTGGTCCACTGCACAATGATGCTGAGAGATATGGGAGAGGACTGAGCCTAAAAACCTCAGCCTTAG-GGGGCACCAGAGCTAATGGTTTGCCCTCAGTGACCCTTCCCATAGACTGCCTGATTATGTCTCACCAGCTGTCATTCTTAGGGGTCCTCCTCTGAAATGTTCTAGGAGGCACTTCCATGTTTCTGTTGACGTAGGTGGTTTGAC-ACTTGAAGAATACATGAGGT i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11290378 1524 + 104110932 cttcaccTCTTGGAAACTCCAGCAGTAGC--CTCAGC--TAGGGGCAAGGGTGGTGACTCCCAAAATTCAAGCATGTACTTTAATCATATAGCTATAAGGCTCTGGGATGAGAAACAGATAGTAG-----TGTGGTCTGATGGCTTTACC-TAATTGGTGAAGCTCTTTTCACGGGTATA-TTCTTGAATGAAGTAGTTTGAACATGCTAACTGGGGATGTCCAATTTTATGACAAGCTTTTGGGACTCAAATAGTCATGTAAATGCACAAGTTGGCATAGAGGAAAAGAGGCGTTGGAGAACA--CTGGG-------AGAACCAATTA--------AAGGTTGGGTTAGGAATCCCAGAGGCATGAGAA-TTAAATTGATGTTTTATATGATCTTGGCATGTTGCCcttggaatattctaaatcctttcaGTTCACTTCATTTCATCAAGGTTGCTGATATTTTTAGTCTGATTTAATCTTTTCTATTGTGGTTCAGCTCAGAGTGCT-TAGGGACACCTCTGGCTTGTGTGAAACAGCTTTGTTATGTTAACATTGCCATTAATCTTACAGGCCTCTCTCTTTGGGGTAAAGCTCAGAGTCTGGTATAACCTTTGCAAGCCGAATGTGACTGGTTGCCTTAAGGAAGGTAGTTCTGCTTGTTTATGATTCCAAGAGCTTGCACTATAACCACAGCGTTATTCTGGGGTCATCCTACCCTTCTgaaaacacatttaataaaatattcacacCCAT-GAGA--TGGGTTACTTGCCCTTTAGGC----TCCAAGCATACCGTTAT-CTTCCATTTCTGTCTATGT-----------ATT-TTATGCAAAGCttcaaacaaagagaaaaaatagatcaATAGTAAGTTAACAGTATATG----C-AATTTCTTGATTTCTCCAAGGAATTGCTATTG-TTTAAACAGTAAAGAACATTAGaccatatgcattttttt--ctcattttagaacCGATGGGCTCATTTTTAGTAATCGC-AGAGAATCCTGGGTGAGAGGGTGAGAAGCTGTTTCTGTGCTCAGTTCTCTATGAATAGACGCCTG-CATGG-CGGAATCGGGATCATTTACCTTGGCAGCACAAGGAACTTTCATTGATCCAAGAGAGAGACTTTAGAGTCTCAAATCCAGCATACAAAATGTAGTGATTAGGACAGAGAGATGA-------AAATGCCATG-TCCAAGGCATTCAGTTGGTAGTTGA-AGAACTGGCTTGACAGTCTCTGTCTCCTGATGGTCAGCCTAGGCCATT--TTGTTATGTCATTTTCCTACAGCATGTGCTTTGAAAATTCTGTAAGACCCACTGTGCGAGGCTAGTATTTGTGGTCCACCGCACAATGATGCTGAGAGATATGGGAGAGGACTGAGCCTAAAAACCTCAGCCTTAG-GGGGCACCAGAGCTAATGGTTTGCCCTCAGTGACCCTTCCCATAGACTGCCTGATTATGTCTCACCAGCTGTCGTTCTTAGGGGTCCTCCTCTGAAATGTTCTAGGAGGCACTTCCATGTTTCTGTTGACGTAGGTGGTTTGAC-ACTTGAAGAATATATGAGGT i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34387998 1523 + 128595539 CTTCACCTCTTGGAAACTCCAGCAGTAGC--CTCAGC--TAGGGGCAAGGGTGGTGACTCCCAAAATTCAAGCATGTACTTTAATCATATAGCTATAAGGCTCTGGGATGAGAAACAGATAGTAG-----TGTGGTCTGATGGCTTTACC-TAATTGGTGAAGCTCTTTTCACGGGTATA-TTCTTGAATGAAGTAGTTTGAACATGCTAACTGGGGATGTCCAATTTTATGACAAGCTTTTGGGACTCAAATAGTCATGTAAATGCACAAGTTGGCATAGAAGAAAAGAGGCGTTGGAGAACA--CT-GT-------AGAACCAATTA--------AAGGTTGGGTTAGGAATCCCAGAGGCATGAGAA-TTAAATTGATGTTTTATATGATCTTGGCATGTTGCCCTTGGAATATTCTAAATCCTTTCAGTTCAGTTCATTTCATCAAGGTTGCTGATATTTTTAGTCTGATTTAATCTTTTCTATTGTGGTTCAGCTCAGAGTGCT-TAGGGACACCTCTGGCTTGTGTGAAACAGCTTTGTTATGTTAACATTGCCATTAATCTTACAGGCCTCTCTCTTTGGGGTAAAGCTCAGAGTCTGGTATAACCTTTGCAAGCCGAATGTGACTGGTTGCCTTAAGGAAGGTAGTTCTGCTTGTTTATGATTCCAAGAGCTTACACTATAACCACAGTGTTATTCTGGGGTCATCCTACCCTTCTGAAAACACATTTAATAAAATATTCACACCCAT-GAGA--TGGGTTACTTGCCCTTTAGGC----TCCAAGCATACCGTTAT-CTTCCATTTCTGTCTATGT-----------ATT-TTATGCAAAGCTTCAAACAAAGAGAAAAAATAGATCAATAGTAAGTTAACAGTATATG----C-AATTTCTTGATTTCTCCAAGGAATTGCTATTG-TTTAAACAGTAAAGAACATTAGACCATATGCATTTTTTT--CTCATTTTAGATCCGATGGGCTCATTTTTAGTAATCGC-AGAGAATCCTGGGTGAGAGGGTGAGAAGCTGTTTCTGTGCTCAGTTCTCTATGAATAGATGCCTG-CATGG-CGGAATCGGGATCATTTACCTTGGCAGCACAAGGAACTTTCATTGATCCAAGAGAGAGACTTTAGAGTCTCAAATCCAGCATACAAAATGTAGTGATTAGGACAGAGAGATGA-------AAATGCCATG-TCCAAGGCATTCAGTTGGTAGCTGA-AGAACTGGCTTGACAGTCTCCGTCTCCTGATGGTCAGCCTAGGCCATT--TTGTTATGTCATTTTCCTACAGCATGTGCTTTGAAAATTCTGTAAGACCCACTGTTCGAGGCTAGTATTTGTTGTCCACCACACAATGATGCTGAGAGATGTGGGAGAGGACTGAGCCTAAAAACCTTAGCCTTAG-GGGGCACCAGAGCTAATGGTTTGCCCTCAGTGACCCTTCCCATAGACTGCCTGATTATGTCTCACCAGCTGTCATTCTTAGGGGTCCTTCTCTGAAATGTTCTAGGAGGCACTTCCATGTTTCTGTTGACGTAGGTGGTTTGAC-ACTTGAAGAATACATGAGGT i chlSab2.chr10 C 0 I 212 s calJac3.chr6 87875206 1510 - 158406734 CTTCACCTCTTGGAAACTCCAGCAGTAGC--CTCAGC--TAGGGGCAAGAGT-GTGACTCCCAAAATTCAAGCAGGTACTTTAATTACATAGCCATAAGGCCCTGGAATGAGAAACCAATAGCCG-----TGTGGTCTGGTGGCTTCACC-TAATTGGTGAAGCTCTTTTTACAGGTACATTTCTTGAATGAAGTAGTTTGAACATGCTAATTGGAGATGTCCAATTTTATGACAAGCTTTTGGGACTCAAATAGTCATGTAAATGCACAAGTTGGCATAGAGAAAAAGAGGCCTTGGAGAACA--CTGGG-------AGAACCAATTA--------AAGATTGGGTTAGAAATCCCAGAGGCATGGGAA-TTGAATTGATGTTTTATATGATGTTGGCATGTTGCCCTTGGAATATTCTAACTCCTTTCAG-----TTCATTTCATCAAGGTTGCTGATATTTTTAGTCTGATTTAATCTTTTCTGCTGTGGTTCAGCTCAGAGTGCT-TAGGGACACCTCTGGCTCATATGAAACAGGTTTGTTATGTTAACATTGCCATTAATCTTACAGGCCTCTCTCTTCGGGGTAAAGCT--GAGTCTGGTATAACCTTTGCAAGCTGAATGTGACTGGTCGCCTTAAGGAAGCTAGTTCTGCTTGTTTGTGATTCCAAGAGCTTGCACTATAACCACAGCATTAATCTGGGGTCATCTCACCCTTCTGAAAACACATTTAATAAAATGTTCACACCCAC-GAGA--TGGGTTACTTGCCCTTTAGGC----TCCAAGCATACCATTAT-CTTCCATTTCTACCCATGT-----------ATT-TTATGCAAAACCTCAAACAAAGAGAAAGAGGAGATCAAT----AGTTAACAGTATATGAAAAA-AATTTCTTGATTTCTCCAAGGAATTGCTATTG-CCTAAATGGTAAAGAAGATTAGACCATATGCATTGTTTTT-TTCATTTTAGAACTGATGGGCTCATTTTTAGTAATCAT-AGAGAATCCTGGGTGAGGGGATGAGAAGCTGATTCTGTGTTCCGTTCTCTATGAATAGAC-CCTG-CATGG-TGGAATCAGGATCATTTACCTTGTCAGCACAAGGAACTTTCATTGATCCAAGAGAAAGACTTTAAAGTCTCAAATCTGACTTATGAAATGTAGTGATTAGGACAGAGAGATGA-------AAATG-CATG-TCCAAGGCATTCAGTTGGTAGCTGA-GGAGCTGGCTTG--AGTGTCTGTCTCCTGATGGCCAGCCTAGGTCATT--TTGTTTTGTCA-TTTCCTACAGCATGTGCTTTGAAGATTCTGTAAGGCCCACAGTTCAAGGCCGGCATTTGTGGTCCATCACATGATGATGCTGAGAGATATGGGAGAGGACTGAGCTTAGAAGCATCAGCCTTGGCGGGGGACCAGAGCTAATGGTTTGCCCTCAGTGAC----CCCACTGACTGCCTGATTATGTCTTGCCAGCTGTCATTCTTCGGGGTCCTCCTCTCAAAGGTTCTAGGAGGCTCTTCCACATTTCTGTTGATGTAGGTGGTTTGAT-GCTTGAAGAATACATGAGGT i calJac3.chr6 C 0 C 0 s mm10.chr2 49724115 1132 + 182113224 CCTCTCTTCTCAGAGAAGTCAACAGTAGCAGCCCCAC--TAGGTTCAG-----GCGACTCCTTTGGCTCAAGTGTG-AGGCTGATCACATAGCTGCATGGCCCTGAGCT-CGGACCTAATCACTT-----TAATGACTGACCCCTCTCTC----CTTGTGAAGCTCTTCCCGGAGGCAGA-CTAATGGGTGATGCAGTTTGACCATGTTAACTGGGGTTGCTTTCTCCTAGGACAA---------ACTCAAATAGTCATGTGACTAGA---------------GAAAAGATTCCTTGAACAGCA--------------GGTCTCACTCATCCCCAGTAAAGTCCACTTAGGAACCCCGGAGGCCCAGAAACTTAAATCAGTGCGCCCTGTGATGCTGGCATATTGCCCTTGGGATATCCTAAGCGCTTTCAG-----TTCATTTCATCAAGGTTGCTGATATTTTCAGTCTGGTTTAATCTTTCTTGGGGTGGTTTGGCTCAG-GTGCTATGGGGACACCTCTGGCCCGGATGTAATAGTTTTGTTCTGGGAATGCCACCATTAATCTTACAGGGCTCTGTCTTTGGGTTACAGCCCAGAGTCTGCTATCACCTTTGCAAGCTGAATGTGACTGGTTG-----AGGATTCTCCTT-TGCTTGTCTGTGGTTCTCCATG-TTATA-TGTCACCCAAACATTAAAGCAGGGTGACCCTACCATTCCACAAACACATCTCAGAAGAT------ACCCAT-GAGAACTGGGTACTTTGCCTTTCGTGCTGAGTCCCCCCCCGCCCCCCT-CCCCCCCGCCTGCCTTTTTAAACCTGGGTAATT-GTACTCAACACCTCAA------TGCAAAAGTAGATCAATAGTAAGTTAATAGTTTTTG----CAAACGTATTGATTTCTCCAAAGAACTGCTATTGTTTTCAACAGTGAGGAA----AAGCCACACGCAATCTCTTC-CTCACTTTA---CAGAT--TCCCACATGTACTGAT----------TCTTGGATGACAGG-TCAGAA-TTGGTTCTATG----------------------------ATGC-TGAGA---------------------------------------GATATGGGAGAGAG---------------------------------------TGGAGCACAGAGGTG----------ATGCC-------------------------CCGG-AGGAC---ATCAAAGCTCTCGGTCTACTG------------TGCCGCT--TGACTGTGTCTTATT--------------------------------------------------------------------------------------------------------------------------GG------------------------------------------------------------------CCGTCATTCTCACGTGACCTCTC-----AGACTCTAGAGGAAGGCCCCATGCTTCCAATGATTTAGATGTTTAGAT-TCTTTGAGAATGCATGAGTT i mm10.chr2 I 1 C 0 s canFam3.chr19 50633676 1492 + 53741614 CCTCCCCTTTTGAAAACTTGAACGGTAGT--GCCAGCTGTAGGGACAA-GGTGGTGACTCCTAAAGCTAA----TGTTCTTTAATCATGTAGCTCTCAGGCCGTGGGATGAGGAACCAATGGTAATGGCTTGTGGTCTGACAGCTTTGCCTTTATTGGTGAATCTGTTTTCAGGGGCTTA-CTCTTGAATGAAGTAGTTGGAACATGCT-GTTAGGGATGTCCAATTCTATGCCAAACTTTTGGGACTCAAA-AGTCATGTAAATGCATAAGTTGGAATGGAAGAAAAGAGACCTTGGAGAACA--CTGTATATCATTCGTCCCCAGTG--------AAGGTCGGGTTAGGAATCCCAGAGGCATAGGAAATTAAATTGATGTCTCATGTGATCTTGGCATATTGCCCTTGGAATATTCTAAATCCTTTCGG-----TTCATTTCATCAAGGTTGCTGATATTTTTAGTCTGATTTAATCTTTTCTGTTGTGGTTCAGCTTGGAGTGCT-TGGGGACACCTCTGGTTTGGCTGAAACCGCTTTGTT-----AACATTGCCATTAATCTTACGGGCCTGGCTATTCTGAGTGAAGCTCAG---TCCGTATCACCTTTACAAGCAAAGTGT----------------GAAGCTAGTTCTGCTTATCTGTGACTCTGGGAATTCGCATTGTAACCACAGTGTTAAACTGGGGGCACCCCGCCCTTCTGGCAACCTCTTTGATGAGACAGTCACACCCTTAGAGC--GGGGTTAAGTGCCCTTTAGGC----ACTTGACATACTGTTATCCTTCCATGTCTAACCAGAT-----------ACGATTATGCAAAATCTCAAAGTAAGAAAAAAAGGAGATCAATAGTAAGGTAACAGTGGATG----C-AGTTTCTTGATTTCTCCGAAGAAACACTATTG-TTTAAA-----------------CCTACTACAGTTTCCTTTTTCATTTTAGAATTGATAGGTTCAC-TTTAGTAATCCCTAAAGAATTTCAGATGAT-GAATGATAACCTGGTTCTATACTTTGTTTTCTATGAAAGGACTCCTGCCATGGTTGGAATGGGGATCATTTGCTTTGGTAGCCTAAGGAGCTTTCAGTgatcc--gagagagactttagagtctcggatgcagcttctggagtgtagtgatgaggactgagtcatgagtgagggaaatgccatgcttgggggtgtccagttggtagctggcggagctgaccttagagtctctgcctcctgatgacaagcctacggcactccctatgacgtcattttcccagAGCATTCACTTGGAAGACCCTCTAAAGCACACATTTCAGGGTTAGCGTTTGTGTTCCATCACAGGGGGTCGCT--GAGATCTGAGAGAGCACTGACC-----AGCCTCAGCCACAG-AGGGCACCGGTGCT-GTGGTCTGACCTTAGTGACTCTCCCCTCGGGCTGCCTGGTGATGCGTTATCAGCTGTCATTCTTCCTTGTCCTCCTCTTAAAGGTTCTAGAAGGT-TTTTCATGCTTCTGATGA--GAGGTGGTTTGATAGTTTTGAGAATATGCGAGTT i canFam3.chr19 C 0 C 0 a score=2050002.000000 s hg38.chr2_GL582966v2_alt 47381 608 + 96131 GGGATATGGCACCTTCTTAGTCTACTGAAAGGTAGAACAGGAGGTATTTAGGTTTGGGTGAGGCACTAgcc---------caggg----tggttatgtgacttacccaagtgtatatcacatataggtggcagagctaggatgaagttacat--atcttctgactcccaccccagtgctcatctcattttgccctcagcccttTAAATGAGGACCTGGTCAACCTCAGTGAATCTA--TTTAGGGTGTGGAGGGAGAAAGACCACA--CGGTTTCCTCCCAGCTGT---------CCCTTCTGTTCCTCCGTGCTGCCCCGCCAGGGCTCCAAGCACAGGTACTCTCCCAAGGCTATGCTGTGTGATGGGAGAGCATGCACTGTGGACTCAGACCTGTAAC--AATGACACTGAGACCTGGGCAGACCTGTGACAATAATGCTGAGTCCTGGGCTGGCGCCTGG----CCCTGCTGAAGGTGCTttttctcatctgtatcatggggcttatatctg--ttaattcaaaaggctgtggtgaggattaaaagtttctagtacatTGCAGGTGCCCAGTAAATATTAGCTTCCT--TCTTTCTCCTGGGCTGGGCTGGGCTCTGCTTACTTCCG--------------TGTGTGGTGTGGAAG--- s panTro4.chr2B 153160116 608 + 247518478 GGGATATGGCACCTTCTTGGTCTACTGAAAGGTAGAACAGGAGGTATTTAGGTTTGGGTGAGGCACTAgcc---------caggg----tggttatgtgacttacccaagtgtatatcacatataggtggcagagctaggatgaagttacat--atcttctgactcccaccccagtgctcatctcattttgccctcagcccttTAAATGAGGACCTGGTCAACCTCAGTGAATCTA--TTTAGGGTGTGGAGGGAGAAAGACCACA--CGGTTTCCTCCCAGCTGC---------CCCTTCTGTTCCTCCGTGCTGCCCCGCCAGGGCTCCAAGCACAGGTACTCTCCCAAGGCCATGCTGTGTGATGGGAGAGCATGCACTGTGGACTCAGACCTGTAAC--AATGACACTGAGACCCAGGCAGACCTGTGACAATAATGCTGAatcctgggctagcgcctgg----ccctgctgaaggtgctttttctcatctgtatcatggggcttatatctg--ttacttcaaaaggctgtggtgaggattaaaagtttctagtacatTGCAGGTGCCCAGTAAATATTAGTTTCCT--TCTTTCTCCTGGGCTGGGCTGGGCTCTGCTTACTTCCG--------------TGTGTGGTGTGGAAG--- i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38366614 608 + 135000294 GGGATATGGCACCTTCTTAGTCTACTGAAAGGTAAAACAGGAGGTATTTAGGTTTGggtgaggcactagcc---------caggg----tggttatgtgacttacccaagtgtataacacacataggtagcagagctaggatgaaattacat--atcttctgactcccaccccggtgctcatctcatttcgccctcagccCTTTAAATGAGGACCTGGTCAACCTCATTGAATCTA--TTTAGGGTGTGGAGGGAGAAAGACCACA--CTGTTTCCTCCCAGCTGC---------CCCTTCTGTTCCTCTGTGCTGCCCCGCCAGGGCTCCAAGCACAGGTACTCTCCCgaggccatgctgtgtgatgggcaagcatgcgctgtggagttagacctgtgac--aatgacactgagacccgggcagacctgtgacaataatgctgagtcctgggctggcgcctgg----ccccgctgaaggtgctttttctcatctgtatcatggggctcatatctg--ttacttcaaaaggttgtggtgaggattaaaagtttctaatacatTGCAGGTGCCCAGTAAATATTAGTTTCCT--TCTTTCTCTTGGGCTGGGCTGGGCTCTGCTTACTTCCG--------------TGTGTGGTGTGGAAG--- i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82319189 608 - 85365473 GGGATATGGCGCCTTCTTAGTCTGCTGAAAGGTAGAACAGGAGGTATTTAGGTTTGGGTGAGGCACTAgcc---------caggg----tggttatgtgacttacccaagtgtatatcacacataggtgtcagagctaggatgaagttacat--atcttctgactcccaccccagtgctcatctcatttcaccCTCAGCCCTTTAAATGAGGACCTGGTCAACCTCAGTGAGTCTA--TTTAGGGTGTGGAGGGAGAAAGACCACA--CGGTTTCCTCCCAGCTGC---------CCCTTCTGTTCCTCCGTCCTGCCCCGCCAGGGCTCCAAGCACAGGTACTCTCCCgaggccgtgctgtgtgatgggcaagcatgcgctttggagtcagacctgtgac--aatgacactgagacctgggcagacctgtgacaagaatgctgagtcctgggctggcacctgg----ccccgctgaaggtgctttttctcatctgtatcatggggctcatatctg--ttacttcaaaaggttgtggtgaggattgaaagtttctagtacatTGCAGGTTCCCAGTAAATATTAGTTTCCT--TCTTTCTCCTGGGCTGGGCTGGGCTCTGCTTACTTCCA--------------TGTGTGGTGTGGAAG--- i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11930490 607 + 106825570 GGGATATGGCCCCTTCTTAGTTTACTGAAAGGTAGAACAGGAGGTATTTAGGTCTGGGTGAGGCACTAgcc---------caggg----tagttatgtgacttacccaagggtatgtcacacacaggcagcagagctaggatgaggttatataaatcttctgactccca-cccagtgctcttcccatttcaccCTCAGCCCTTTAAATGAGGACCTGGTCCACCTCAGTGAATCTG--TTTAGGGTGTGGAGGGAGAAAGACCACA--CGGTTTCCTCCCGGCTGC---------CCCTTCTGTCCCTCCGTGCTGCCCCACCAGGGCTCCAAGCACAGGTACTCTCCCGAGGCCATGCTGTGTGATGGGCAAGCATGCGCTGTGGAGTCAGACCTATGAC--AATGACACTGAGACCCGGGCAGACTTGTGACGATAATGCTGAGTCCT-GGCTGATGCCTGG----CCCTGCTGAAGGTGC-TTTTCTCATCTGTATTGTGGGACTCGTATCTG--TTACTTCGAAAGGTTGTGGTGAGGGTTAAAAGTTTCCGGTACATTGCACGTGCCCAGTAAATATTAGTTTCCT--TCTTTCTCCTGGGCTGGACTGGGCTCTGCTTACTTCTG--------------TGTGTGGTGTGGAAG--- i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37634662 607 + 132586672 GGGATATGGCCCCTTCTTAGTTTACTGAAAGGTAGAACAGGAGGTATTTAGGTCTGGGTGAGGCACTAgcc---------caggg----tagttatgtgacttacccaagggtatgtcacacacaggcagcagagctaggatgaggttatataaatcttctgactccca-cccagtgctcttcccatttcaccCTCAGCCCTTTAAATGAGGACCTGGTCCACCTCAGTGAATCTA--TTTAGGGTGTGGAGGGAGAAAGACCACA--CGGTTTCCTCCCAGCTGC---------CCCTTCTGTCCCTCCGTGCTGCCCCACCAGGGCTCCAAGCACAGGTACTCTCCCGAGGCCATGCTGTGTGATGGGCAAGCATGCGCTGTGGAGTCAGACCTATGAC--AATGACACTGAGACCCGGGCAGACTTGTGACGATAATGCTGAGTCCT-GGCTGATGCCTGG----CCCTGCTGAAGGTGC-ttttctcatctgtatcgtgggactcatatctg--ttacttcgaaaggttgtggtgagggttaaaAGTTTCCGGTACATTGCACGTGCCCAGTAAATATTAGTTTCCT--TCTTTCTCCTGGGCTGGACTGGGCTCTGCTTACTTCTG--------------TGTGTGGTGTGGAAG--- i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11291902 607 + 104110932 GGGATATGGCCCCTTCTTAGTTTACTGAAAGGTAGAACAGGAGGTATTTAGGTCTGGGTGAGGCACTAGCC---------CAGGG----TAGTTTTGTGACTTACCCAAGGGTATGTCACACACAGGCAGCAGAGCTAGGATGAGGTTATATAAATCTTCTGACTCCCA-CCCAGTGCTCTTCCCATTTCACCCTCAGCCCTTTAAATGAGGACCTGGTCCACCTCAGTGAATCTA--TTTAGGGTGTGGAGGGAGAAAGACCACA--CGGTTTCCTCCCAGCTGC---------CCCTTCTGTCCCTCCGTGCTGCCCCACCAGGGCTCCAAGCACAGGTACTCTCCCGAGGCCATGCTGTGTGATGGGCAAGCATGCGCTGTGGAGTCAGATCTATGAC--AATGACACTGAGACCCGGGCAAACTTGTGACGATAATGCTGAGTCCT-GGCTGATGCCTGG----CCCTGCTGAAGgtgc-ttttctcatctgtatcGTGGGACTCATATCTG--TTACTTCGAAAGGTTGTGGTGAGGGTTAAAAGTTTCCGGTACATTGCACGTGCCCAGTAAATAttagtttcct--tctttctcctgggCTGGACTGGGCTCTGCTTACTTCTG--------------TGTGTGGTGTGGAAG--- i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34389733 605 + 128595539 GGGATATGGCCCCTTCGTAGTTTACTGAAAGGTAGAACAGGAGGTATTTAGGTCTGGGTGAGGCACTAgcc---------cagtg----tagttatgtgacttacccaagggtatgtcacacacaggcagcagagctaggatgaggttatat--atcttctgactccca-cccagtgctcttcccatttcaccCTCAGCCCTTTAAATGAGGACCTGGTCCACCTCAGTGAATCTA--TTTAGGGTGTGGAGGGAGAAAGACCACA--CGGTTTCCTCCCAGCTGC---------CCCTTCTGTCCCTCCGTGCTGCCCCACCAGGGCTCCAAGCACAGGTACTCTCCCGAGGCCATGCTGTGTGATGGGCAAGGATGCGCTGTGGAGTCAGACCTATGAC--AATGACACTGAGACCCGGGCAGACTTGTGACAATAACGCTGAGTCCT-GGCTGATGCCTGG----CCCCGCTGAAGGTGC-ttttctcatctgtatcgtgggactcatatctg--ttacttcgaaaggttgtggtgaggattaaaGGTTTCCAGTACATTGCAGGTGCCCAGTAAATATTAGTTTCCT--TCTTTCTCCTGGGCTGGACTGGGCTCTGCTTACTTCTG--------------TGTGTAGTGTGGAAG--- i chlSab2.chr10 I 212 C 0 s calJac3.chr6 87876716 603 - 158406734 GGGATATGGCACCTTTTTATGTTACTGAATGGTGGAACAGGTGGTATTTAGGTTTGAGtgaggcactag-c---------caggg----tggctatatgacttacccaagtgtatatcatacagaggtggcagaactaggatgaggttacct--atcttctgactcccactccagtgctcatcctgttttgccctcagccCTTTAAATGAGGACCTGTTCAACCTCAGTGGATTTA--TTTTGGGTGTAGATGGAGAAAGACCACA--TGGTTTCCTCTCAGCTGCCCCTTCTGTCCCTTCTGTCCCTCTGTGCTTCCCTGCCAGGGCTCCAAGGACAAGTAGTCTCCCAAGGCCAAGCTGTGTGATGGGCAAGCATGCACTGTGGAGTCAGACCTGTGAC--AGTGACAC--AGACCTGTGCAGACCTGGGACAATAATGCTGAGTCCTGGGCTGGTACCTGG----CCCTGCTGATGGTGC-TCTTC---TCTGTATCGTGAGGGTCCTATCTG--TTACTTCAAAAGGTTGCAGTGAGGATTA-------CTAGTGCATTGCAGGTGCCCAGTAAATATTAGTTCCCT--TCTTTCTTCTGGTCTCCCACTGGCTCTGCTTACTTCCG--------------CATGTGGTGTGGAAG--- i calJac3.chr6 C 0 C 0 s mm10.chr2 49725247 530 + 182113224 GGGACACAGTGTCTTCTTCGGTTATTGAA--------------GTCTCTGGGATGGAGTGGGGCATTCGCT-----------GGC----TGGTAGCATGTCTTTCTTAAGTTTTCACAGCCTGTAGTTGACAGAGCAGGAGCGTGTTTTCCT--AGCTCTTGACCTTGAGCCCCACACTCACTTCATTTTGGCCTTAGCCCTTTAACCAAGGAACTGGTTAGGCTCAGTACGTCTT--TCTAGGACACAGTGGGAGAAAGATTACA--TAGTTTCTCCAAA----------------------TCCCTCTGTGCTATTCC-TCATGGGTCTAAGAAGAGATAAACG--CAAGGTCCTGATCCTTGATGGAGAAGCTCGCACTTTGTAGT-AGACCTGCAGCTTAATGATAA-GAGGCGCAGG---------GACGA---------------CGCCCGTGCTTAC----CTGTAC-------GC-TATTCTTATCTGTAACTGAGGGCTCACAGATG--TCACTTC-AAAGATTGTTATGGAGACTAAAAGTCCCAGGTAGATAACAGG-ATGCTGTAAATACCAGGTTGCTCATCAGTCTCCT---CTG---TGGGTTCTCTTTGCT----------------------TGATGTAGAAG--- i mm10.chr2 C 0 I 197 s canFam3.chr19 50635168 608 + 53741614 GAGGCACGGCATCTTTATAGGTTATTGAGTGGTAGAGCTGAAAGTATCTAGGTCTAGATGAGAGGCTAGCCTGGGCGGGTCAGGGGGATGGGTTACATGACTTGGCT-GGTTTATATCACCCGGAGGTGGCAGGGCTGGAATGAGGCTGTGT--ATCTTTTGGCTCCCAGTCCTGTGGTCATCTCGTTTGGGTCTTAGCCCTTTACACGAGGAGCTTGTCAACCCTCATGAGTCTAATTATAGAATGTGGTGGGAGAAAGACTATATGTGGTCTCCTCCCAGCTGT---------TCCCTCTGCCCCTCCGCGCTGTCTCTCCAAAGGTCTAAGGACAGGTACTGT-CCAAGGCAGGACCGTGTGATGGAAAAACATACACTTTAGAGTCTGACGTGTGTC-------------------------------TTAATAGTGCTGAGGCTTGGACTGATGAATGGCCTACCCTGCTGGTGGTAC-TTTTCTCATCTGCCACATGGGGCTTGTATCTGGTTCCCCCCCAAAAGTTGTAGCAGGGATAAAAGTTTCTGGGGGTGTAGCAGTTGCTCAGTAAATAGTAGTTTCTT--TCTTTCTCTT--------CTGGGTTCTGTTTACTTATGGGAGAATGTCATCCTGTGTGGTATCCGCGGGG i canFam3.chr19 C 0 C 0 a score=734067.000000 s hg38.chr2_GL582966v2_alt 47989 222 + 96131 GGGT--GGTGCCAAGG-GGGCCACCAGCAGAGACACAATGTGAACAAGTTGGCGCTGGCACTCCTTGTCTCTTAGTCTCTGTCCCTCTACAGTACTGCTCTGCTCTTGGAGAT-CCTGACACGAA-CCAAGCTTAAGTAGAAATGAAAGTTGATTATTTTTATGCAGATTACCATTGCAATAAAAACATTTTTATACTTAAAGGTGAACAGTGACCTGTTGACAACT s panTro4.chr2B 153160724 222 + 247518478 GGGT--GGTGCCAAGG-GGGCCACCAGCAGAGACACAATGTGAACAAGTTGGCGCTGGCACTCCTTGTCTCTTAGTCTCTGTCCCTCTACAGTACTGCTCTGCTCTTGGAGAT-CCTGACACGAA-CCAAGCTTAAGTAGAAATGAAAGTTGATTATTTTTATGCAGATTACCATTGCAATAAAAACATTTTTATACTTAAAGGTGAACAGTGACCTGTTGACAACT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38367222 222 + 135000294 GGGT--GGTGCCAAGG-GGGCCACCAGCAGAGACACAATGTGAACAAGTTGGCACTGGCACTCCTTGTCTCTTAGTCTCTGTCCCCCTACAGTACTGCTCTGCTCTTGGAGAT-CCTGACATGAA-CCAAGCTTAAGTAGAAATGAAAGTTGATGATTTTTATGCAGATTACCATTGCAATAAAAACATTTTTATAATTAAAGGTCACCAGTGACCTGTTGACAACT i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82319797 223 - 85365473 GGGT--GGTGCCAAGG-GGGCCACCAGCAGAGACACAATGTGAACAAGTTGGCGCTGGCACTCCTTGTCTTTTAGTCTCTGTCCCTCTACAGTGCTGCTCTGCTCTCAGAGAT-CCTGACATGAACCCAAGCTTAAGTAGAAATGAAAGTTGATTATTTTTATGCAGATTACCATTGCAATAAAAACATTTTTATAATTAAAGGTGACCAGTGACCTGTTGACAACC i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11931097 224 + 106825570 GGGTGAGGTGCCAAGG-GGGCCACCAGCAGAGACACATTGTGAACAAGTTGGCTCTGGCACTCCCTGTCTCTTAGTCCCTGTCCCTCTACACTACTGCTCTGCTCTTGGAGAT-CCTGATGTGAA-CCAAGCTTAAACAGAAATGAAAGTTGATTATTTTTATGCAGATTACCATTGCAACAAAAACATCTTCATAATTAAAGGTGACCAGTGACCTGTTGACAACC i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37635269 224 + 132586672 GGGTGAGGTGCCAAGG-GGGCCACCAGCAGAGACACATTGTGAACAAGTTGGCTCTGGCACTCCCTGTCTCTTAGTCCCTGTCCCTCTACACTACTGCTCTGCTCTTGGAGAT-CCTGACATGAA-CCAAGCTTAAATAGAAATGAAAGTTGATTATTTTTATGCAGATTACCATTGCAACAAAAACATCTTCATAATTAAAGGTGACCAGTGACCTGTTGACAACC i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11292509 224 + 104110932 GGGTGAGGTGCCAAGG-GGACCACCAACAGAGACACGTTGTGAACAAGTTGGCGCTGGCACTCCCTGTCTCTTAGTCCCTGTCCCTCTACGCTACTGCTCTGCTCTTGGAGAT-CCTGACATGAA-CCAAGcttaaatagaaatgaaaattgattatttttatgcAGATTACCATTGCAACAAAAACATCTTCACAATTAAAGGTGACCAGTGACCTGTTGACAACT i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34390338 224 + 128595539 GGGTGAGGTGCCAAGC-GGGCCACCAGCAGAGACACATTGTGAACAAGTTGTCGCTGGCACTCCCTGTCTCTTAGTCCCTGTCCCTCTACACTACTGCTCTGCTCTTGGAGAT-CCTGACATGAA-CCAGGCTTAAATAGAAATGAAAGTTGATTATTTTTATGCAGATTGCCATTGCAACAAAAACATCTTTATAATTAAAGGTGACCAGTGACCTGTTGACAACC i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87877319 220 - 158406734 GGGTGTGGTACCAAGG-GGCCCACCAGCAGAGACACAAGGTGACCAAGTTGGCACTGACACTC----TCTCTTAGTCCTTGTCCCTCTACAGTACTGCTCTGCTATTGGAGAT-CCTGAGATGAA-ACAAGCTTAAATAGAAATAAAAGTTGATTATTTTTATGCCAATTACCATTGCAACAAAAACATCTTTATAATTAAAGGTGACCAGTGACTTGTGGACAACT i calJac3.chr6 C 0 C 0 s canFam3.chr19 50635776 222 + 53741614 TGGT--GGTGCAAAGGTGGGTTGCAAGCAGAGTTACAAGATGAGCAAGTTGGCGTTGGCACTGTT--TCTTTTGTTTTCTCATCTCCTCCAATACTAGGATTCTATTGGAAATGTGTGAGAGGAA-TTAAGTGCAAGTAGAAATAGAAGTTGAACCTTATTTCACTGATTACCATCGCAACAAAACGTTTTTTATAATTAAAGGTGGCCCGTGACCAGTTGGCAACT i canFam3.chr19 C 0 I 4 e mm10.chr2 49725777 197 + 182113224 I a score=991475.000000 s hg38.chr2_GL582966v2_alt 48211 372 + 96131 GAGGTTGACCAGTTTCTCATTTATAAGGGTGTGCATATTATTTTGT--------tttatttatttatttatttatttatttatttatttattttttgagatggagtctcgctctgtcactcaggctggagtccagtggtgcgacctcagtgcactgcaacctctgcctcctgggttcaagcaattctcctgcctcagcctcctgagtagctgggactacaggcgcacaccaccacgcctggctaatttttgtatttttagtagagatggggcttcaccatcttggccaggatggtcttgatttcctgacctcgtgatccacctgcctcggcctcccaaagtgctgggatttcaggcctgagccaccacgcctggccGCA-T s panTro4.chr2B 153160946 359 + 247518478 GAGGTTGACCAGTTTCTCATTTATAAGGGTGTGCATATTATTATGT--------------------tttatttatttatttatttatttattttttgagatggagtctcgctctgtcactcaggctggagtccagtggcgcgacctcggtgcactgcaacctctgcctcctgggttcaagcaattctcctgcctcagcctcctgagtagctgggactacaggcgcacaccaccacgcccggctaa-ttttgtatttttagtagagatggggcttcaccatgttggccaggatggtcttgatttcctgacctcgtgatccacccgcctcggcctcccaaagtgctgggatttcaggcctgagccaccacgcctggccGCA-T i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38367444 380 + 135000294 GAGGTTGACCAGTTTCTCATTTATAAGGGTGTGCATGTTATTTTGTtttatttatttatttatttatttatttatttatttatttatttattttttgagatggagtctcgctctgtcacttaggctggagtccagtggcacgacctcagtgcactgcaacctccgcctcccgggttcaagcaattctcctgcctcagcctcctgagtagctgggactacaggtgcacaccaccacgcccggctaatttttgtatttttagtagagatggggcttcaccatgttggccaggatggtcttgatttcctgacctcgtgatccacccgccttggcctcccaaagtgctgggatttcaggcctgagccaccacgcccggccGCA-T i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82320020 372 - 85365473 GAGGTTGACCAGTTTCTCATTTATAAGGGTGTGCATGTTATTTTGT--------tttatttatttatttatttatttatttatttatttattttttgagatggagtttcgctctgtcactcaggctggagtccagtggcgcgaccttggtgcactgcaacctccgcctcctgggttcaagcaattctcctgcctcagcctcctgagtagctgggactacaggcgcacaccaccacgcccagctaatttttgtatttttagtagagatggggcttcaccatgttggccaggatggtcttgatttcctgacctcatgatccacccgcctcggcctcccaaagtgctgggatttcaggcctgagccaccacgcccagccTCA-T i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11931321 354 + 106825570 GGGGTTGACCAGTTTCTCATTTATAAGGGTGTGCATGTTATTTTGT------------------------TTTATTTATCATTATTATTATTAtttgagatggagtctcgctctgttgcccaggctggagtccagtggcacgatcttggtgcactgcaacctccacctcccaggttccagcgattctcctgcctcagcctcctgagtagctgggtctacaggcgcacagcagcacacccagctaatttttgtatttttagtagagatggggcttcaccatgttggccagggtggtcttgatttcctgacctcatgatccagctgccttggcctcccaaagtgctgggattacagccctgagccaccatgcccgg-cGCA-- i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37635493 354 + 132586672 GGGGTTGACCAGTTTCTCATTTATAAGGGTGTGCATGttattttgt------------------------tttatttatcattattattattatttgagatggagtctcgctctgttgcccaggctggagtccagtggcacgatcttggtgcactgcaacctccacctcccaggttccagcgattctcctgcctcagcctcctgagtagctgggtctacaggcgcacagcagcacacccagctaatttttgtatttttagtagagatggggcttcaccatgttggccagggtggtcttgatttcctgacctcatgatccagctgccttggcctcccaaagtgctgggattacagccctgagccaccatgcccgg-cGCA-- i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11292733 355 + 104110932 GGGGTTGACCAGTTCCTCATTTATAAGGGTGTgcatgttattttgt------------------------tttatttatcattattattattatttgagatggagtctcgctctgttgcccaggctggagtccagtggcatgatcttggtgcactgcaacctccacctcccaggttccagcgattctcctgcgtcagcctcctgagtagctgggtctacaggcgcacagcaccacacccggctaatttttgtatttttagtagagatggggcttcaccatgttggccagggtggtcttgatttcctgacctcatgatccacctgccttggcctcccaaagtgctgggattacagccctgagccaccatgcccggccgca-- i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34390562 356 + 128595539 GGGGTTGACCAGTTCCTCATTTATAAGGGTGTGCATGTTATTTTGt------------------------tttatttattattattattattatttgagatggagtctcgctctgttgcccaggctggagtccagtggcacgatcttggtgcactgcaacctccacctcccaggttccagtgattctcctgcctcagcctcctgagtagctgggtctacaggtgcacagcagcacacccagctaatttttgtatttttagtagagatggggcttcaccaggttggccagggtggtcttgatttcctgacctcatgatccagcttccttggcctcccaaagtgctgggattacagccctgagccaccatgcccggccGCAT- i chlSab2.chr10 C 0 I 230 s calJac3.chr6 87877539 345 - 158406734 AGGGTTGACTAGTTTCACATTTATAAGGGTGTGCACGTTATTTACA-----------------------------------TTATTAtttttttttgagacagagtcttgctctgtcactcaggctggagtgcaggggcacactcttggctcactgcaacctccgcctcctgggttcaagcaattctcctgcctcagcctcctgagtagcttggattacagatgcatgccactatgcccgactaatttttgtatttttagtagagacggggtttgaccatgtaagccagggtggtctcaatttcctgacctcatgatgcacctacctcggcctcctaaagtgctgggattacaggcatgatccaccatgcctggccACA-T i calJac3.chr6 C 0 C 0 e canFam3.chr19 50635998 4 + 53741614 I e mm10.chr2 49725777 197 + 182113224 I a score=-15406.000000 s hg38.chr2_GL582966v2_alt 48583 6 + 96131 -----GTTA-tt s panTro4.chr2B 153161305 7 + 247518478 -----GTTAttt i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38367824 4 + 135000294 -----ATTA--- i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82320392 5 - 85365473 -----GTTA--t i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11931675 1 + 106825570 -------T---- i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37635847 1 + 132586672 -------T---- i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11293088 1 + 104110932 -------t---- i papAnu2.chr12 C 0 C 0 s calJac3.chr6 87877884 8 - 158406734 GTTTTGtt---- i calJac3.chr6 C 0 C 0 e canFam3.chr19 50635998 4 + 53741614 I e mm10.chr2 49725777 197 + 182113224 I e chlSab2.chr10 34390918 230 + 128595539 I a score=908281.000000 s hg38.chr2_GL582966v2_alt 48589 306 + 96131 ttttttttaat----------ttttgagatggggtcttgttctgttgcgcagactagagtgcagtggtgaaatcacaactcactgcagcttcaaccttccaggctcaagccatccacctgcctcagcctcctgagtagctggtactacaggcacataccaccacactcagctaa------ttttt-------ttttttgtatgttttgtagagacggagatttgccatgttgctcaggctggtctcggactcctgggctcaagtgatcaagctgccttggcctcccaaagtgctgggattataggcgtgagccactgtaactggccTTA s panTro4.chr2B 153161312 312 + 247518478 ttttttttaat----------ttttgagatggggtcttgttctgttgcgcagactagagtgcagtggtgaaatcacaactcactgcagcttcaaccttccaggctcaagccatccacctgcctcagcctcctgagtagctggtactacaggcacataccaccacactcagctaattttttttttt-------ttttttgtatgttttgtagagacggagatttgccatgttgctcaggctggtcttggactcctgggctcaagtgatcaagctgccttggcctcccaaagtgctgggattataggcgtgagccactgtaactggccTTA i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38367828 308 + 135000294 ttttttttaag----------ttttgagatggggtcttgttctgttgtgcagactagagtgcagtggtgaaatcacaactcactgcagctttaaccttccgggctcaagccatccatctgcctcagcctcctgagtagctggtactacaggcacataccaccacactcagctaa----ttttttt-------ttttttgtatgttttgtagagacggagatttgccatgttgctcaggctggtctcggactcctgggctcaagtgatcaagctgccttggcctcccaaagtgctgggattataggcgtgagccactgtacctggccTTA i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82320397 310 - 85365473 ttttttttaat----------ttttgagatggggtcttgttctgttgcgcagactagagtgcagtggtgaaatcacaactcactgcagcttcaaccttccgggctcaagccatccacctgcctcagccgcctgtgtagctggtactacaggcacataccaccacactcagctaa--ttttttttt-------ttttttgtatgttttgtagagacggagatttgccgtgttgctcaggctggtctcagactcctgggctcaagtgatcaagctgccttggcctcccaaagtgctgggattataggcgtgagccactatacctggccTTA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11931676 314 + 106825570 TAttttttaat----------ttttgagatggggtc-tgttctgttgcacaggctagagtgcagtggtgaaatcacagctcactgcagcttcaactttccgggctcaagccatccacctgcctcaacctcctgagtagctgggactacaggcacataccaccacactcagctaa----tttttttcggctaattttttgtatttttagtagagacagggatttgccatgttgctcaggttggtctcggactcctgggctcaagtgatcaagctgccttggcctccgaaagtgctgggattataggcgtgagccactgtacctggccTCA i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37635848 310 + 132586672 TAttttttaat----------ttttgagatggggtc-tgttctgttgcacaggctagagtgcagtggtgaaatcacagctcactgcagcttcaactttccgggctcaagccatccacctgcctcaacctcctgagtagctgggactacaggcacataccaccacactcagctaa----ttttttt----tttttttttgtatgttttgtagagacagggatttgccatgttgctcaggttggtctcggactcctgggctcaagtgatcaagctgccttggcctccgaaagtgctgggattataggcgtgagccactgtacctggccTCA i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11293089 308 + 104110932 tattttttaat----------ttttgagatggggtc-tgttctgttgcacaggctagagtgcagtggtgaaatcacagctcactgcagcttcaaccttctgggctcaagccatccacctgcctcaacctcctgagtagctgggactacaggcacataccaccacactcagctaa----ttttttt------tttttttttatgttttgtagagacagggatttgccatgttgctcaggttggtctcggactcctgggctcaagtgatcaagctgccttggcctcccaaagtgctgggattataggcgtgagtcactgtacctggcctca i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34391148 306 + 128595539 TAttttttaaa----------ttttgagatggggtc-tgttctgttgcacaggctagagtgcagtggtgaaatcacagctcactgcagcttcaaccttccgggctcaagccatccacctgcctcaacctcctgagtatctgggactacaggcacataccaccacactcagctaa----ttttttt--------tttttgtatgttttgtagagacagggatttgccatgttgcttaggttggtctcggactcctgggctcaagtgatcaagctgccttggcctcccaaagtgctgggattataggcgtgagccactgtacctggccTCA i chlSab2.chr10 I 230 C 0 s calJac3.chr6 87877892 312 - 158406734 ttttttttaattaaaaaaaaatttcgagacagggtcttgttctattgcccaggccggagtgcagtggtaaaatcacagctcactgcagcttcagccttcgtagctcaagtcatccacctgcgtcagcctcctgagtagctgggactatacgcacataccaccacactcagctaa----ttttttt------------ggtatgttttatagagatagggttttgccatgttgctcaggctggtcttgaactcctggactccagtgatccagctgcctt-acctcccaaagtgctggaattatagacatgagccactgtacctggccTCA i calJac3.chr6 C 0 C 0 e canFam3.chr19 50635998 4 + 53741614 I e mm10.chr2 49725777 197 + 182113224 I a score=13410.000000 s hg38.chr2_GL582966v2_alt 48895 4 + 96131 TGTT s panTro4.chr2B 153161624 4 + 247518478 TGTT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38368136 4 + 135000294 TGTT i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82320707 4 - 85365473 TGTT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11931990 4 + 106825570 TGTT i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37636158 4 + 132586672 TGTT i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11293397 4 + 104110932 tgTT i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34391454 4 + 128595539 TGTT i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87878204 4 - 158406734 TGCT i calJac3.chr6 C 0 C 0 s mm10.chr2 49725974 4 + 182113224 TATC i mm10.chr2 I 197 C 0 e canFam3.chr19 50635998 4 + 53741614 I a score=8368897.000000 s hg38.chr2_GL582966v2_alt 48899 2361 + 96131 ATTTCATGTATAAG-AAAATTCAAGTAT-AAAATACTTTCTGAAAAGTGCTTTAAAATCTGTTATCCATGGACAAGATCTTTAGAACCGGCATCAGAGTGAGCGTGCTTATGCATGTTCTAAGAGATGCAGTTGAATGTGTAGATA------TA--------AGCACACCTTATTATTCTGGAGGTTTTGAAAGACTTT-AAAAAAAATCACAGTAGAGCTCATTAATTCCTTAGATAAGTTGCCTTAATAAAGGGTAAATATAGTTTGGGAAATGTCTCTGATACAAGTGATCCACGTCTTCTGTAGTATCATCCTTGTTCTTC--ATCCTTCCCAGGTGGGGCCAGGGGCCCTTGGTTTTTCACTGTACCTT-AAAAATCACTGCATCCCAGCTTGTCATCTGTT-GGGAGGAAGCCTGC-ATCTTCAGGCTTTGAAATGAGCACAGCGTAAGGACAGAG-------TTCACT---CCA-TTTCTCTCCTCTTGTGGTT-TATATCACTT-------GTAGTGCTTGTCCATTTGT------------CCCAGGAGAAGAGATGGTGGCTCTCCGATGGTAAATTCTTTGAATCCTTTATGCTAAGTTGTCTAATATTTAAGTGCTCAGGAACATAAACACAAAATCGTTACTGGTAACTGACGTGCTAAGTTTATAAAGTAGAAGAGAAAATAT-A-TCTACAAAATAGTCTTCTAGTTGTAGAAGTGCCA--GTTTTTGGAGGTTTCATTCTGGTATAATTTCCCT----------------AATATGATTTGTGCAGGAAAATAG--------------AACCATTAAAGAAACATTGGTGTAAAGGGTTCAGTAGAAACAGGATCTCTTTAAGTAGAAAAGCAAAGCCAAAT--------GATGGTCTACATAAAGGACAAGGAGATTCAGATCCTGTATGGCTGATTTTAGAATTTTCTTTCTCCATGGAAAGCATTAGTTTGTGACATTAAATTAACATGATTCAAATGTATGCATAGATATCACCAAACAGGCTGGGGAATATCCCGTGGAACATTGAGGTTCTGTGACCCAG----GCCCTTAAGTTTGGGTTAGATTTCACCCCTGGAAAAGGCAAAAGGCACAGTACAGGGTGTGTTTTTCTGGG------------------CTG---CTGATGAAAACACCT---------AGACAGGACCTGGCACGAAGA---------------------------AGTGCCCAAGGATGCT------------CAATTGAATCTGACTC------TGTTTGGTGTTTAGACCCTAGAAGCCAGGTTGTCA---------------------------------------------------TCTTCACAGGCTATGTTTCAAATTTTA--TTTGAAGTCGTGAAAATA-ATGCAGTGAAGACTGTGTTTTTTAT--GTAGTTAGGCATCA--TCTGCCTGCTGCTTTGCCTGCACTGGGGG----TGG----ACTGAGTCTAAGGGGAGG------------TGGG-----GAGAGGTGGGCAGCGAATACCCTTGCTTTTGTGGCAGCAACACCTAGTGGCAGAAAA--AGAGTGAGAAGAGCGAATTTGC------CTTTCCCAC-TTCAGTGACAGCCCAGAAAGTAAGCATGAATGCTTCTGTC-CCTCAGCTGCCCTGAGG--------------t----tttttttttttttttttttttttttttAACTGTTAAGAAAATTAACTTCCAATCGAGAGGGAGGTCTTCCAATGCC-------AAATCTCC---AGTTCATTTT--------TCTCTGG----TCTGAGAGGTTTGAAGTGGAAACATTG-----GCTCTCCCTGCCGATCTGGTGGCAGCACTCCTGCTTACTGATGCATTTGACAAGATTTGGGATAATAACATATGACAGTGCAGCTAGGTAGAAATTCACTCCTTTATTTTTTGAATTAGGAATTTCACTGTTAGCATCTTTGAATTGGGAGGGATATCTCTAACGTCCCTTTCAGTTCCCAAACCGTAGATCTCTGATTTCTCAATGAGCAGGAATTGGGTTGAATGTGCAGGATATTATAT-TTCCAGAATAGTCAGCTGTTTCATCTGCTGAGAAAGGTGGGTGAGGAGGTATTTTAACTGAAT-GAGATCTCGGAATCTGTCTGTTTTCTGTGCAGTAACACCACACTATTCCTTCCTTCTTATCAGCAAGCTTA------------TGGTAGCTGCCTGTCACTGGGAGACTGGGATATCAAAAATGACATAACTAACCAAAAAAA--CAAACATGATGTTTCGTTTCAGGATGATGAAATTAACCAGCAGAGCCAGCTGGCTGAAAAGCTGAAGCAACAGATGTTGGATCAGGATGAGGTAAAGAATGCAATATATTTTTTTTT-CCACAAAG---------TTCTTCT--------ATTACTCTTTGTTGTTGATGTTTGTTCCAGGAATTTAATTGGCATAGAAGCTTTTCAT--------------------------------------AATTACA----------------------------------------------------------------------------------GAATCATGTGGAAATTTCTTGGTAGATGTCCCTTCACTGCCTCTTACAAGCTGATTATCACTGAATTTAGAAAATAAATGTCTGACTTTCAAAAACCCCTGATGTTTTGAGATT--GAGTAGCCAGTGGCTACAGTTCGTTCT----GGAAGGGCAGA s panTro4.chr2B 153161628 2369 + 247518478 ATTTCATGTATAAG-AAAATTCAAGTAT-AAAATACTTTCTGAAAAGTGCTTTAAAATCTGTTATCCATGGACAAGATCTTTAGAACCGGCATCAGAGTGAGCGTGCTTATGCATGTTCTAAGAGATGCAGTTGAATGTGTAGATA------TA--------AGCACACCTTATTATTCTGGAGGTTTTGAAAGAC-TT-AAAAAAAATCACAGTAGAGCTCATTAATTCCTTAGATAAGTTGCCTTAATAAAGGGTAAATATAGTTTGGGAAATGGCTCTGATACAAGTGATCCACGTCTTCTGTAGTACCATCCTTGTTCTTC--ATCCTTCCCAGGTGGGGCCAGGGGCCCTTGGTTTTTCACTGTACCTT-AAAAATCACTGCATCCCAGCTTGTCATCTGTT-GGGAGGAAGCCTGC-ATCTTCAGGCTTTGAAATGAGCACAGCGTAAGGACAGAG-------TTCACT---CCA-TTTCTCTCCTCTTGTGGTT-TATATCACTT-------GTAGTGCTTGTCCATTTGT------------CCCAGGAGAAGAGATGGTGGCTCTCCGATGGTAAACTCTTTGAATCCTTTACGCTAAGTTGTCTAATATTTAAGTGCTCAGGAACATAAACACAAAATCGTTACTGGTAACTGACGTGCTAAGTTTATAAAGTAGAAGAGAAAATAT-A-CCTACAAAATAGTCTTCTAGTTGTAGAAGTGCCA--GTTTTTGGAGGTTTCATTCTGGTATAATTTCCCTAATTC-ACCTGCCAGAAATATGATTTGTGCAGGAAAGTAG--------------AACCATTAAAGAAACATTGGTGTAAAGGGTTCAGTAGAAACAGGATCTCTTTAAGTAGAAAAGCAAAGCCAAAT--------GATGTTCTACATAAAGGACAAGGAGATTCAGATCCTGTATGGCTGATTTTAGAGTTTTCTTTCTCCATGGAAAGCATTAGTTTGTGACATTAAATTAACATGATTCAAATGTATGCATAGATATCACCAAACAGGCTGGGGAATATCCCATAGAACATTGAGGTTCTGTGACCCAG----GCCCTTAAGTTTGGGTTGGATTTCACCCCTGGAAAAGGCAAAAGGCACAGTACAGGGTGTGTTTTTCTGGG------------------CTG---CTGATGAAAACACCT---------AGACAGGACCTGGCACGAAGA---------------------------AGTGCCCAAGGATGCT------------CAATTGAATCTGACTC------TGTTTGGTGTTTAGACCCTAGAAGCCAGGTTGTCA---------------------------------------------------TCTTCACAGGCTATG-TTCAAATTTTA--TTTGAAGTCGTGAAAATA-ATGCAGTGAAGACTGTGTTTTTTAT--GTAGTTAGGCATCA--TCTGCCTGCTGCTTTGCCTGCACTGGGGG----TGG----ACTGAGTCTAAGGGGAGG------------TAGG-----GAGAGGTGGGCAGCGAATACCCTTGCTTTTGTGGCAGCAACACCTAGTGGCAGAAAA--AGAGTGAGAAGAGCGAATTTGC------CTTTCCCAC-TTCAGTGACAGCCCAGAAAGTAAGCATGAATGTTTCTGTC-CCTCAGCTGCCCTGAGG------------------------ttttttttttttttttttttttAACTGTTAAGAAAATTAACTTCCAATCGAGAGGGAGGTCTTCCAATGCC-------AAATCTCC---AGTTCATTTT--------TCTCTGG----TCTGAGAGGTTTGAAGTGGAAACGTTG-----GCTCTCCCTGCCGATCTGGTGGCAGCACTCCTGCTTACTGATGCGTTTGACAAGATTTGGGATAATACCATATGACAGTGCAGCTAGGTAGAAATTCACTCCTTTATTTTTTGAATTAGGAATTTCACTGTTAGCATCTTTGAATTGGGAGGGATATCTCTAACGTCCCTTTCAGTTCCCAAACCGTAGATCTCTGATTTCTCAATGAGCAGGAATTGGGTTGAATGTGCAGGATATTATAT-TTCCAGAATAGTCAGCTGTTTCATCTGCTGAGAAAGGTGGGTGAAGAGGTATTTTAACTGAAT-GAGATCTCAGAATCTGTCTGTTTTCTGTGCAGTAACACCACACTATTCCTTCCTTCTTATCAGCAAGCTTA------------TGGTAGCTGCCTGTCACTGGGAGACTGGGATATCAAAAATGACATAACTAACCAAAAAAA--CAAACATGATGTTTTGTTTCAGGATGATGAAATTAACCAGCAGAGCCAGCTGGCTGAAAAGCTGAAGCAACAGATGTTGGATCAGGATGAGGTAAAGAATGCAATATATTTTTTTTTCCCATAAAG---------TTCTTCT--------ATTACTCTTTGTTGTTGATGTTTGTTCCAGGAATTTAATTGGCATAGAAGCTTTTCAT--------------------------------------AATTACA----------------------------------------------------------------------------------GAATCATGTGGAAATTTCTTGGTAGATGTCCCTTCACTGCCTCTTACAAGCTGATTATCACTGAATTTAGAAAATAAATGTCTGACTTTCAAAAACCCCTGATGTTTTGAGATT--GAGTAGCCAGTGGCTACACTTCGTTCT----GGAAGGGCAGA i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38368140 2360 + 135000294 ATTTCATGTATAAG-AAAATTCAAGTAT-AAAATACTCTCTGAAAAGTGCTTTAAAATCTGTTATCCATGGACGAGGTCTTTAGAACTGGCATCAGAGTGAGCGTGCTTATGCATGTTCTAAGAGATGCAGTTGAATGTGTAGATA------TA--------AGTGCACCTTATTATTCTGGAGGTTTTGAAAGACTTT-AAAAAAAATCACAGTAGATCTCATTAATTCCTTAGATAAGTTGCCTTAATAAAGGGTAAATATAGTTTGGGAAATGTCTCTGATACAAGTGATCCATGTCTTCTGTAATATCATCCTTGTTCTTC--ATCCTTCCCAGGTGGGGCCAGGGACCCTTGGTTTTTCACTGTACCTT-AAAAATCACTGCATCCCAGCTTGTCATCTGCT-GGGAGGAAGCCTGC-ATCTTCAGGCTTTGAAATGAGCACAGCGTAAGGACAGAG-------TTCACT---CCA-TTTCTCTCCTCTCATGGTT-TATATCACTT-------GTAGTGCTTGTCCATTTGT------------CCCAGGAGAAGAGATGGTGGCTCTCCGATGGTAAACTCTTTGAATCCTTTATGCTAAGTTGTTTAATATTTAAGTGCTCAGGAACATAAACACAAAATCGTTCCTGGTAACTGACGTGCTAAGTTTATAAAGTAGAAGAGAAAATAT-G-TCTACAAAATGGTCTTCTAGTTGTAGAAGTGCCA--GTTTTTGGAGGTTTCATTCTGGTATAATTTCCCTAATTC-ACCTGCCAGAAATATGATTTGTGCAGGAAAATAG--------------AACCATTAAAGAAACATTGGTGTAAAGAGTTCAGTAGAAACAGGATCTCTTTAAGCAGAAAAGCAAAGCCAAAT--------GATATTCTACATAAAGGACAAGGAGATTCAGATCCTGTATGGCTGATTTTAGAATTTTCTTTCTCCATGGAAAGCATTAGTTTGTGACATTAAATTAACCTGATTCAAATGTATGCATAGATACCACCAAACAAGCTGGGGAATATCCCATGGAACATTGAGGTTCTGTGACCCAG----GCCCTTAAGTTTGGGTTGGATTTCACCCCTGGAAAAGGCAAAAGGCACAGTACAGGGTGTGTTTTTCTGGG------------------CTG---CTGATGAAAACACCT---------AGGCAGGACCTGGCATGAAGA---------------------------AGTGCCCAAGGATGCT------------CAATTGAATCTGACTC------TGTTTGGTGTTTAGACCCTAGAAGCCAGGTTGTCA---------------------------------------------------TCTTCACAGGCTATGTTTCAAATTTTA--TTTGAAGTCGTGAAAATA-ATGCAGTGAAGACTGTGTTTTTTAT--GTAGTTAGGCGTCA--TCTGCCTGCTGCTTCGCCTGCACTGGGGG----TGG----ACCAAGTCTAAGGGGAGG------------TGGG-----GAGAGGTGGGCAGCGAATACCCTTGCTTTTGTGGCAGCAACACCTAGTGGCAGAAAA--AGAGTGAGAAGAGAAAATTTGC------CTTTCCCAC-TTCAGTGACAGCCCAGAAAGTAAGCATGAATGCTTCTGCC-CCTCAGCTGCCCTGAGG-----------------------------------TTTTTTTTTAAAACTGTTAAGAAAATTAACTTCCAATCGAGAGGGAGGTCTTCCAATGCC-------AAATCTCC---AGTTCATGTT--------TCTCTGG----TCTGAGAGGTTTGAAGTGGAAACGTTG-----GCTCTCCCTGCCGATCCGGTGGCAGCACTCCTGCTTACTGATGTGTTTGACAAGATTTGGGACAATAACATATGACAGTGCAGCTAGGTAGAAATTCACTCTTTTATTTTTTGAATTAGGAATTTCACTGTTAGCATCTTTGAATTGGGAGGGATATCTCTAACGTCCCTTTGAGTTCCCAAACTGTAGATCTCTGATTTCTCAATGAGCAGGAATTGGGTTGAATGTGCAGGATATTATAT-TTCCAGAGTAGTCAGCTGTTTCATCTGCTGAGAAAGGTGGGTGAAGAGATATTTTAACTGAAT-GAGATCTCGGAACCTGTCTGTTTTCTGTGCAGCAACACCACACTATTCCTTCCTTCTTATTAGCAAGCTTA------------TGATAGCTGCCTGTCACTGGGAGACTGGGATATCAAAAATGATATAACTAACCCAAAAAA--CAAACATGATGTTTCGTTTCAGGATGATGAAATTAACCAGCAGAGCCAGCTGGCTGAAAAGCTGAAGCAACAGATGTTGGATCAGGATGAGGTAAAGAATGCAATATATTTTTTTTTTCCACAAAG---------TTCTTCT--------ATTACTCTTTGTTGTTGATGTTTGTTCCAGGAATTTAATTGGCAAAGAAGCTTTTCAT--------------------------------------AATCACA----------------------------------------------------------------------------------GAATAATGTGGAAATTTCTTGGTAGATGTCCCTTCACTGCCTCTTACAAGTTGATTATCACTGAATTTAGAAAATAAATGTCTGACTTTCAAAAACCCCTGATGTTTTGAGATT--GAGTAGCCAGTGGCTATACTTCGTTCT----GGAAGGGCAGA i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82320711 2383 - 85365473 ATTTCATGTATAAG-AAAATTCAAGTAT-AAAATACTTTCTGAAAAGTGCTTTAAAATCTGTTATCCATGGACAAGATCTTTAGAACCTGCATCAGAGTGAGTGTGCTTACGCATGTTCTAAGAGATGCAGTTGAATGTGTAGATA------TA--------AGCACACCTTATTATTCTGGAGGTTTTGAAAGAC-TT-TAAAAAAATCACAGTAGATCTCATTAATTCCTTAGATAAGTTGCCTTGATAAAGGGTAAATATAGTTTGGGAAACGTCTCTGATACAAGTGATCCACGTCTTCTATAATATCATCCTTGTTCTTC--ATCCTTCCCAGGTGGGGCCAGGGGCCCTTGGTTTTTCACTGTTCCTT-AAAAATCACTGCATCCCAGCTAGTCATCTGTT-GGGAGGAAGCCTGC-ATCTTCAGGCTTTGAAATGAGCACAGTGTAAGGACAGAG-------TTC-CT---CCA-TTTCTCTCCTCTCGTGGTT-TATATCACTT-------GTAGTGCTTGTCCATTTGT------------CCCAGGAGAAGAGATGGTGGCTCTCCGATGGTAAACTCTTTGAATCCTTTATGCTAAGTTGTTTAACATTTAAGTGCTCCGGAACATAAACACAAAATCGTTCTTGGTAACTGACGTGCTAAGTTTATAAAGTAGAAGAGAAAATAT-A-TCTACAAAATAGTCTTGTAGTTGTAGAAGTGCCA--GTTTTTGGAGGTTTCATTCTGGTATAATTTCCCTAATTC-ACCTGCCAGAAATATGATTTGTGCAGGAAAATAG--------------AACCATTAAAGAAGCATTGGTATAAAGAGTTCAGTAGAAACAGGATCTCTTTAAGCAGAAAAGTGAAGCCAAAT--------GATATTCTACATAAAGGACAAGGAGATTCAGATCCTGTATGGCTGATTTTAGAATTTTCTTTCTCCACGGAAAGCATTAGTTTGTGACATTAAATTAACCTGATTCAAATGTATGCATAGATACCACCAAACAGGCCGGGGAATATCCCGTGGAATATTGAGGTTCTGTGACCCAG----GCCCTTAAGTTTGGGTTGAATTTCACCCCTGGAAAAGGCAAAAGACACAGTACAGGGTGTGTTTTTCTGGG------------------CTG---CTGATGCAAACACCT---------AGGCAGGACCTGGCACGAAGA---------------------------AGTGCCCCAGGATGCT------------CAATTGAATCTGACTCT-----TGTTTGGTGTTTAGACCCTAGAAGCCAGGTTGTCA---------------------------------------------------TCTTCACAGGCTATGTTTCAAATTTTA--TTTGAAGTCGTGAAAATA-ATGCAGCAAAGACTGTGTTTTTTAT--GTAGTTAGGCATCA--TCTGCCTGCTGCTTCGCCTGCACTGGGGG----TGG----ACCGAGTCTAAGGGGAGG------------TGGG-----GAGAGGTGGGCAGCGAATACCCTTGCTTTTGTGGCAGCAACACCTAGTGGCAGAAAA--AGAGTGAGAAGAGAGAATTTGC------CTTTCCCAC-TTCAGTGACAGCCCAAAAAGTAAGCATGAATGCTTTTGCC-CTTCAGCTGCCCTGAGGGtttttt--tttttt----ttttttttttttttttttttttttCCAAACTGTTAAGAAAATTAACTTCCAATCGAGAGGGAGGTCTTTCAATGCC-------AAATCCCC---GGTTCATGTT--------TCTCTGG----TCTGAGAGGTTTGAAGTGGAAACGTTA-----GCTCTCCCTGCCGATCCCGTGGCAGCACTCCTGCTTACTGATGTGTTTGACAAGATTTGGGACAATAACTTATGACAATGCAGCTAGGTAGAAATTCACTCCTTTATTGTTTGAATTAGGAATTTCACTGTTAGCATCTTTGAATTGGGAGGGATATCTCTAACGTCCCTTTCAGTTCCCAAACCCTAGATCTCTGATTTCTCAATGAGCAAGAATTGGGTTGAATGTGCAGGATATTATAT-TTCCAGAATAGTCAGCTGTTTCATCTGCTGAGAAAGGTGGGTGAAGAGGTATTTTAACTGAAT-GAGATCTCGGAAC----CTGTTTTCTGTGCAGCAACACCACACTATTCCTTCCTTCTTATCAGCAAGCTTA------------TGGTAGCTGCCTGCCACTGGGAGACTGGGATATCAAAAATGACATAACTAACCAAAAAAA--CAAACATGATGTTTGTTTTCAGGATGATGAAATTAACCAGCAGAGCCAGCTGGCTGAAAAGCTGAAGCAACAGATGTTGGATCAGGATGAGGTAAAGAATGCAATATATTTTTTTTTTCCACAAAG---------TTCTTCT--------ATTACTCTTTGTTGTTGATGTTTGTTCCAGGAATTTAATTGGCAAAGAAGCTTTTCAT--------------------------------------AATCACA----------------------------------------------------------------------------------GAATCATGTGGAAATTTCTTGGTAGATTTCCCTTCACTGCCTCTTACAAGCTGATTATCACTGAATTTAGAAAATAAATGTCTGACTTTC-AAAACGCTTGATATTTTGAGATT--GAGTAGCCAGTGGCTACACTTCGTTCT----GGAAGGGCAGA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11931994 2390 + 106825570 ATTTCATGTATAAG-AAAATTCAAGTAT-AAAATACTTTCTGAAAAGTACTTTAAAATCTGTTATCCATGGACTAGATCTTTAGAGCCGGCATCAGAGTGAGCATGCTTATGCATGTTCTAAGAGATGCAGTTGAATGTGTAGATA------TA--------AGCACAGCTTATTATTCTGGAAGTTTTGAAAGACTTTAAAAAAAAATCACAGTGGATCTCATTAATTCCTTAGGTAAGTTGCCTTAATAAAGGGTAAATGTAGTTTGGGAAATGTCTGTGATACAAGTGATCCACATCTTCTGTAATATCATCCTTGTTCTTC--ATCCTTCCCGGGTGGGGCCAGGGGCCCTTGGTTTTTCACTGTACCTT-AAAAATCACTGCATCCCAGCTTGTCACCTGTT-GGGAGGAAGCCTGC-ATCTTCAGGCTTTGAAATGAGCACAGTGTAAGGACAGAG-------TTTACT---CCA-TTTCTCTCCTTTCATGGTT-TATATCACTT-------GTAGTGCTTGTCCATTTGT------------CCCAGGAGAAGAGATGGTGGCTCTCCAATGGTAAACTCTTTGAATCCTTTATGCTAAGTTGTTTAATATTTAAGTGCTCAGGGACATAAACACAAAATCGGTCCTGGTAACTGACATGCTACATTTATAAAGTAGAAAAGAAAATAT-A-TCTACAGAATAGTCTTCTAGTTGTAGAAGTGCCA--GTTTTTGGAGGTTTCATTCTGATATAATTTCCCTAACTC-ACCTGCCAGAAATATGATTCGTGCAGGAAAATAG--------------AACCGTTAAAGAAACATTGGTGTAAAGAGTTCAGTAGAAACAGGATCTCTCTGAGCAGAAAAGCGAAGCCAAAT--------GATATTCTACATAAAGGACAAGGAGATTCAAATCCTTTATGGCTGATTTTAGAATTTTCTTTCTCCATGGAAAGCATTAGTTTGTGACATTAAATTAACATGATTCAAATGTATGCATAGATACCGCCAAACAGGCTGGGGACTATCCCGTGGAACATTGAGGTTCTGTGACCCAG----GCCCTTAAGTGTGGGTTGGATTTCATCTGTGGAAAAGGCAAAAGGCACAGTACAGGGTGCGTTTTTTTGGG------------------CTG---CTGATGAAAACACCT---------AGGCAGGACCTGGCACGAAGA---------------------------AGTGCCCAAGGATGCT------------CAATTGAATCTGACGC------TGTCTGTTGTTTAGACCCTCGAAGCCAGGTTGTTA---------------------------------------------------TCTTCCCAGGCTGT--TTTAAATTTTA--TTTGAAGTCGTGAAAATA-ATGCAGCGAAGACTGTGTTTTTTAT--GTAGTTAGCCGTCA--TCTGTCTGCTGCTTAGCCTGCACTGGGGG----TGG----ACCGAGTCTAAGGGGAGG------------TGGG-----GAGAGGTAGGCAGCAAATACCCTTGCTTTTGTGGCAGCAACACCTAGTGGCAGAAAATGAGAGAGAGAAGAGAGAATTTGC------CTTTCCCAC-TTCAGTGGCAGCCGAGAAAGTAAGCATGAATGCTTCTGCC-CCTCAGCTGCCCTGAGgtttttttgttttttg----gttttttcgtttgtttgtttgtttTTAAATTGTTAAGAAAATTAACTTCCAGTCGAGAGGAAGGTCTTCCAGTGCC-------AAATCTCC---AGTTCATGTT--------TCTCCGG----TCTGAGAGGTTTGAAGTGGAAACGTTG-----GCTCTCCCTACCGATCCGGTGGTAGCACTCCTGCTTACTGATGTGTTTGACAAGACTTGGGACAATAATATATGATAGTGCAGCTAGATAGAAATTCACTCCTTTATTTTTTGAATTAGGAATTTCACTCTTAACATCTTTGAATTAGAAGGGATATCTCTAACGTCCCTTTCAGTTCCCAAACTCTAGATCTCTGATTTCTCAATGAGCAGGAATTGAGTTGAATGTGCAGGATATTACAT-TTCCAGAGTATTCAGCTGTTTCATCTGCTGAGAAAGGTGGGTGAAGAGGTATTTTAAGTGAAT-GAGATCTCGGAACCTGCCTGCTTTCTGTGCAGCAACGCCACACCATTCCTTCCTTCTTATTAGCAAGCTTA------------TGGTAGTCGCCTGTCATTGGGAGACTGGGATATCAAAAATGACATAACTAACAAAAAAAA-CCAAACGTGATGTTTCGTTTCAGGATGATGAAATTAACCAGCAGAGCCAGCTGGCTGAAAAGCTGAAGCAACAGATGTTGGATCAGGACGAGGTAAAGAATGCAATATATTTTTTTT--CCACAAAG---------TTCTTCT--------ATTACTCTTTGTTGTTGATGTTTATT-CAGGAATTTAATTGGCAAAGAAGCTTTTCAT--------------------------------------AATCACA----------------------------------------------------------------------------------GAATCATGTGGAAATTTCTTGGTAGATTTCCCTTCACTGCCTCTTACAAGCTGATTATCACTGAATTTAGAAAATACATGTCTGACTTTCAAAAACCCCTGATGTTTTGAGATT--GAGTAGCCAGTGGCTACACTTCGTCCT----GGAAGGGCAGA i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37636162 2376 + 132586672 ATTTCATGTATAAG-AAAATTCAAGTAT-AAAATACTTTCTGAAAAGTACTTTAAAATCTGTTATCCATGGACTAGATCTTTAGAGCCGGCATCAGAGTGAGCATGCTTATGCATGTTCTAAGAGATGCAGTTGAATGTGTAGATA------TA--------AGCACAGCTTATTATTCTGGAAGTTTTGAAAGACTTTAAAAAAAAATCACAGTGGATCTCATTAATTCCTTAGGTAAGTTGCCTTAATAAAGGGTAAATGTAGTTTGGGAAATGTCTGTGATACAAGTGATCCACATCTTCTGTAATATCATCCTTGTTCCTC--ATCCTTCCCGGGTGGGGCCAGGGGCCCTTGGTTTTTCACTGTACCTT-AAAAATCACTGCATCCCAGCTTGTCATCTGTT-GGGAGGAAGCCTGC-ATCTTCAGGCTTTGAAATGAGCACAGTGTAAGGACAGAG-------TTTACT---CCA-TTTCTCTCCTTTCA---------------T-------GTAGTGCTTGTCCATTTGT------------CCCAGGAGAAGAGATGGTGGCTCTCCAATGGTAAACTCTTTGAATCCTTTATGCTAAGTTGTTTAATATTTAAGTGCTCAGGAACATAAACACAAAATCGTTCCTGGTAACTGACGTGCTACATTTATAAAGTAGAAGAGAAAATAT-A-TCTACAGAATAGTCTTCTAGTTGTAGAAGTGCCA--GTTTTTGGAGGTTTCATTCTGATATAATTTCCCTAACTC-ACCTGCCAGAAATATGATTCGTGCAGGAAAATAG--------------AACCGTTAAAGAAACATTGGTGTAAAGAGTTCAGTAGAAACAGGATCTCTCTGAGCAGAAAAGCGAAGCCAAAT--------GATATTCTACATAAAGGACAAGGAGATTCAAATCCTTTATGGCTGATTTTACAATTTTCTTTCTCCATGGAAAGCATTAGTTTGTGACATTAAGTTAACATGATTCAAATGTATGCATAGATACCGCCAAACAGGCTGGGGACTATCCCGTGGAACATTGAGGTTCTGTGACCCAG----GCCCTTAAGTGTGGGTTGGATTTCATCTGTGGAAAAGGCAAAAGGCACGGTACAGGGTGCGTTTTTTTGGG------------------CTG---CTGATGAAAATACCT---------AGGCAGGACCTGGCACGAAGA---------------------------AGTGCCCAAGGATGCT------------CAATTGAATCTGACGC------TGTCTGTTGTTTAGACCCTCGAAGCCAGGTTGTTA---------------------------------------------------TCTTCCCAGGCTGT--TTTAAATTTTA--TTTGAAGTCGTGAAAATA-ATGCAGCGAAGACTGTGTTTTTTAT--GTAGTTAGCCGTCA--TCTGTCTGCTGCTTAGCCTGCACTGGGGG----TGG----ACCGAGTCTAAGGGGAGG------------TGGG-----GAGAGGTAGGCAGCAAATACCCTTGCTTTTGTGGCAGCAACACCTAGTGGCAGAAAATGAGAGAGAGAAGAGAGAATTTGC------CTTTCCCAC-TTCAGTGGCAGCCGAGAAAGTAAGCATGAATGCTTCTGCC-CCTCAGCTGCCCTGAGgtttttttgttttttg----gttttttcgtttgtttgtttgtttttAAATTGTTAAGAAAATTAACTTCCAGTCGAGAGGGAGGTCTTCCAGTGCC-------AAATCTCC---AGTTCATGTT--------TCTCCGG----TCTGAGAGGTTTGAAGTGGAAACGTTG-----GCTCTCCCTACCGATCCGGTGGTAGCACTCCTGCTTACTGATGTGTTTGACAAGACTTGGGACAATAATATATGATAGTGCAGCTAGATAGAAATTCACTCCTTTATTTTTTGAATTAGGAATTTCACTCTTAACATCTTTGAATTAGAAGGGATATCTCTAACGTCCCTTTCAGTTCCCAAACTCTAGATCTCTGATTTCTCAATGAGCAGGAATTGAGTTGAATGTGCAGGATATTACAT-TTCCAGAATATTCAGCTGTTTCATCTGCTGAGAAAGGTGGGTGAAGAGGTATTTTAAGTGAAT-GAGATCTCGGAACCTGCCTGCTTTCTGTGCAGCAACGCCACACCATTCCTTCCTTCTTATTAGCAAGCTTA------------TGGTAGTCGCCTGTCATTGGGAGACTGGGATATCAAAAATGACATAACTAACAAAAAAAA-CCAAACATGATGTTTCGTTTCAGGATGATGAAATTAACCAGCAGAGCCAGCTGGCTGAAAAGCTGAAGCAACAGATGTTGGATCAGGACGAGGTAAAGAATGCAATATATTTTTTTT--CCACAAAG---------TTCTTCT--------ATTATTCTTTGTTGTTGATGTTTATT-CAGGAATTTAATTGGCAAAGAAGCTTTTCAT--------------------------------------AATCACA----------------------------------------------------------------------------------GAATCATGTGGAAATTTCTTGGTAGATTTCCCTTCACTGCCTCTTACAAGCTGATTATCACTGAATTTAGAAAATACATGTCTGACTTTCAAAAACCCCTGATGTTTTGAGATT--GAGTAGCCAGTGGCTACACTTCGTCCT----GGAAGGGCAGA i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11293401 2381 + 104110932 ATTTCATGTATAAG-AAAATTCAAGTAT-AAAATACTTTCTGAAAAGTACTTTAAAATCTGTTATCCATGGACTAGATCTTTAGAGCCGGCATCAGAGTGAGCATGCTTATGCATGTTCTAAGAGATGCAGTTGAATGTGTAGATA------TA--------AGCACAGCTTATTATTCTGGAAGTTttgaaagactttaaaaaaaaatcacagtggaTCTCATTAATTCCTTAGGTAAGTTGCCTTAATAAAGGGTAAATGTAGTTTGGGAAATGTCTGTGATACAAGTGATCCACGTCTTCTGTAATATCATCCTTGTTCTTC--ATCCTTCCCGGGTGGGGCCAGGGGCCCTTGGTTTTTCACTGTACCTT-AAAAATCACTGCATCCCAGCTTGTCACCTGTT-GGGAGGAAGCCTGC-ATCTTCAGGCTTTGAAATGAGCACAGTGTAAGGACAGAG-------TTCACT---CCA-TTTCTCTCCTTTCACGGTT-TATATCACTT-------GTAGTGCTTGTCCATTTGT------------CCCAGGAGAAGAGATGGTGGCTCTCCAATGGTAAATTCTTTGAATCCTTTATGCTAAGTTGTTTAATATTTAAGTGCTCAGGAACATAAACACAAAATCGTTCCTGGTAACTGACATGCTACGTTTataaagtagaagagaaaatat-a-tctaCAGAATAGTCTTCTAGTTGTAGAAGTGCCA--GTTTTTGGAGGTTTCATTCTGATATAATTTCTCTAACTC-ACCTGCCAGAAATATGATTCGTGCAGGAAAATAG--------------AACAGTTAAAGAAACATTGGTGTAAAGAGTTCAGTAGAAACAGGATCTCTCTGAGCAGAAAAGCGAAGCCAAAT--------GATATTCTACATAAAGGACAAGGAGATTCAAATCCTTTATGgctgattttagaattttctttctccatggaAAGCATTAGTTTGTGACATTAAATTAACATGATTCAAATGTATGCATAGATACCGCCAAACAGGCTGGGGAATATCCCGTGGAACATTGAGGTTCTGTGACCCAG----GCCCTTAAGTGTGGGTTGGATTTCATCTGTGGAAAAGGCAAAAGGCACAGTACAGGGTGCGtttttttGGG------------------CTG---CTGATGAAAACACCT---------AGGCAGGACCTGGCACGAAGA---------------------------AGTGCCCAAGGATGCT------------CAATTGAATCTGACGC------TGTCTGTTGTTTAGACCCTCGAAGCCAGGTTGTTA---------------------------------------------------TCTTCCCagtctgt--tttaaatttta--tttgaagtcGTGAAAATA-ATGCAGTGAAGACTGTGTTTTTTAT--GTAGTTAGCCGTCA--TCTGCCTGCTGCTTAGCCTGCACTGGGGG----TGG----ACCGAGTCtaaggggagg------------tggg-----gagaggtaGGCAGCAAATACCCTTGCTTTTGTGGCAGCAACACCTAGTggcagaaaatgagagagagaagagagaatttgC------CTTTCCCAC-TTCAGTGACAGCCGAGAAAGTAAGCATGAATGCTTCTGCC-CCTCAGCTGCCctgaggtttttttggtttttg----tttttttcatttgtttgtttgtttttaaattgttaagaAAATTAACTTCCAGTCGAGAGGGAGGTCTTCCAGTGCC-------AAATCTCC---AGTTCATGTT--------TCTCCAG----TCTGAGAGGTTTGCAGTGGAAACGTTG-----GCTCTCCCTACTGATCCGGTGGTAGCACTCCTGCTTACTGATGTGTTTGACAAGACTTGGGACAATAACATATGATAGTGCAGCTAGATAGAAATTCActcctttattttttgaattagGAATTTCACTCTTAACATCTTTGAATTAGAAGGGATATCTCTAACGTCCCTTTCAGTTCCCAAACTCTAGATCTCTGATTTCTCAATGAGCAGGAATTGAGTTGAATGTGCGGGATATTATAT-TTCCAGAATATTCAGCTGTTTCATCTGCTGAGAAAGGTGGGTGAAGAGGTATTTTAAGTGAAT-GAGATCTCGGAACCTGTCTGCTTTCTGTGCAGCAACGCCACAccattccttccttcttattAGCA----------------------AGTCGCCTGTCATTGGGAGACTGGGATATCAAAAATGACATAActaacaaaaaaaa-ccaaacatgatGTTTCGTTTCAGGATGATGAAATTAACCAGCAGAGCCAGCTGGCTGAAAAGCTGAAGCAACAGATGTTGGATCAGGACGAGGTAAAgaatgcaatatatttttttt--ccacaaag---------ttCTTCT--------ATTACTCTTTGTTGTTGATGTTTATTCCAGGAATTTAATTGGCAAAGAAGCTTTTCAT--------------------------------------AATCACA----------------------------------------------------------------------------------GAATCATGTGGAAATTTCTTGGTGGATTTCCCTTCACTGCCTCTTACAAGCTGATTATCActgaatttagaaaatacatgTCTGACTTTCAAAAACCCCTGATGTTTTGAGATT--GAGTAGCCAGTGGCTACACTTCGTCCC----GGAAGGGCAGA i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34391458 2394 + 128595539 ATTTCATGTATAAG-AAAATTCAAGTAT-AAAATACTTTCTGAAAAGTACTTTAAAATCTGTTATCCATGGACTAGATCTTTAGAGCCGGCATCAGAGTGAGTATGCTTGTGCATGTTCTAAGAGATGCAGTTGAATGTGTAGATA------TA--------AGCACAGCTTATTATTCTGGAAGTTTTGAAAGACTTTAAAAAAAAATCACAGTGGATCTCATTAATTCCTTAGGTAAGTTGCCTTAATAAAGGGTAAATGTAGTTTGGGAAATGTCTGTGATACAAGTGATCCACGTCTTCTGTAATATCATCCTTGTTCTTC--ATCCTTCCCAGGTGGGGCCAGGGGCCCTTGGTTTTTCACTGTACCTT-AAAAATCACTGCATCCCAGCTTGTCACCTGTT-GGGAGGAAGCCTGC-ATCTTCAGGCTTTGAAATGAGCACAGTGTAAGGACAGAG-------TTCACT---CCA-TTTCTCTCCTCTCATGGTT-TATAGCACTT-------GTAGTGCTTGTCCATTTGT------------CCCAGAAGAAGAGATGGTGGCTCTCCAATGGTAAACTCTTTGAATCCTTTATGCTAAGTTGTTTAATATTTAAGTGCTCAGGAACATAAACACAAAATCGTTCCTGGTAACTGACATGCTACGTTTATAAAGTAGAAGAGAAAATAC-A-TCTACACAATAGTCTTCTAGTTGTAGAAGTGCCA--GTTTTTGGAGGTTTCATTCTGATATAATTTCCCTAACTC-ACCTGCCAGAAATATGATTCGTGCAGGAAAATAG--------------AACCGTTAAAGAAACATTGGTGTAAAGAGTTCAGTAGAAACAGGATCTCTTTGAGCAGAAAAGCGAAGCCAAAT--------GATATTCTACATAAAGGACAAGGAGATTCAAATCCTTTATGGCTGATTTTAGAATTTTCTTTCTCCATGGAAAGCATTAGTTTGTGACATTAAATTAACATGATTCAAATGTATGCATAGATACCACCAAACAGGCTGGGGAATATCCCGTGGAACATTGAGGTTCTGTGACCCAG----GCCCTTAAGTGTGGGTTGGATTTCATCTGTGGAAAAAGCAAAAGGCACAGTACAGGGTGCATTTTTCTGGG------------------CTG---CTGATGAAAACACCT---------AGGCAGGACCTGGCACGAAGA---------------------------AGTGCCCAAGGATGCT------------CAATGGAATCTGACGC------TGTCTGTTGTTTAGACCCTCGAAGCCAGGTTGTTA---------------------------------------------------TCTTCCCAGGCTGT--TTTAAATTTTA--TTTGAAGTCGTGAAAATA-ATGCAGCGAAGACTGTGTTTTTTAT--GTAGTTAGCCGTCA--TCTGCCTGCTGCTTAGCCTGCACTGGGGG----TGG----ACCAAGTCTAAGGGGAGG------------TGGG-----GAGATGTAGGCAGCAAATACCCTTGCTTTTGTGGCAGCAACACCTAGTGGCAGAAAATGAGAGAGAGAAGAGCGAATTTGC------CTTTCCCAC-TTCAGTGACAGCCGAGAAAGTAAGCATGAATGCTTCTGCC-CCTCAGCTGCCCTAAGgtttttttgttttttgtttttttttttcatttgtttgtttgtttttAAATTGTGAAGAAAATTAACTTCCAGTTGAGAGGGAGGTCTTCCAGTGCC-------AAATCTCC---AGTTCATGTT--------TCTCCGG----TCTGAGAGGTTTGAAGTGGAAACGTTG-----GCTCTCCCTACCGATCCGGTGGTAGCACTCCTGCTTAC-GATGTGTTTGACAAGACTTGGGACAATAACATATGATAGTGCAGCTAGATAGAAATTCACTCCTTTATTTTTTGAATTAGGAATTTCACTCTTAACATATTTGAATTAGAAGGGATATCTCTAACGTCCCTTTCAGTTCCCAAACTCTAGATCTCTGATTTCTCAATGAGCAGGAATTGAGTTGAATGTGCAGTATATTATAT-TTCCAGAATATTCAGCTGTTTCATCTGCTGAGAAAGGTGGGTGAAGAGGTATTTTAACTGAAT-GAGATCTCGGAACCTGTCTGGTTTCTGTGCAGCAACGCCACACCATTCCTTCCTTCTTATTAGCAAGCTTA------------TGGTAGTCGCCTGTCATTGGGAGACTGGGATATCAAAAATGACATAACTAACAAAAAAAA-CCAAACATGATGTTTCGTTTCAGGATGATGAAATTAACCAGCAGAGCCAGCTGGCTGAAAAGCTGAAGCAACAGATGTTGGATCAGGACGAGGTAAAGAATGCAATATATTTTTTTT--CCACAAAG---------TTCTTCT--------ATTACTCTTTGTTGTTGATGTTTATTCCAGGAATGTAATTGGCAAAGAAGCTTTTCAT--------------------------------------AATTACA----------------------------------------------------------------------------------GAATCATGTGGAAATTTCTTGGTAGATTTCCCTTCACTGCCTCTTACAAGCTGATTATCACTGAATTTAGAAAATACATGTCTGACTTTCAAAAACCCCTGATGTTTTGAGATT--GAGTAGCCAGTGGCTACACTTCGTCCT----GGAAGGGCAGA i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87878208 2364 - 158406734 ATTTCATGTATAAG-AAAATTCAAGTATAAAAATATTTTCTGAAAAGTGCTTTACAATTTATTATCCATGGACAAGATCTTTAGTGCTGGCATCAGAGTGAGTGTGCTTACGCATGTTCTAAGAGATGCAGTTGAATGTGTAGATA------TA--------AGCACACATTATTATTCTGGAAGTTTTGAAAGAC-TT--AAAAAAATCACAATAGATCTCATTAATTTCTTAGAGAAGTTGCCTTAATGAAAGGTAAATGGAGTTTGGGAAAAGTCTCTGGTACAAGTGATACATGTCTTCTGTAACATCATCCTTGTTCTTC--AT-CTTTCCAGGTGGGGCCAGGGGCCCTTTGTTTATTACTGTACCTTAAAAAATCACTGCATCCCAGCCTGTCACCTGTT-GAGAGGAAGCCTGC-ATCTTCAGGCTTTGAAATAAACACAGCATAAGAACAGAG-------TTTACTCCACCA-TTTCTCTCCTGTCATGATT-TATATCACTT-------GTAGTGCTTGTCCATTTGT------------CCCAGGGGAAGAGACAGTAGCTCT-TGATGGTAAACTCTTTGAGTACTTTATGCTAAGTTGTTTAATATTTAAGTGCTTAGGAACATAAACACAAAATTGTTCCTGGTAACTGACATGCTAAGTTTATAAAGAGGAAGAGAAAATAT-A-TCTACAAAATAGTCTTCTAGTTGTAGAAGTGCCA--GTTTTTGGAGGTTTCATTCTGGTATAATTTCCCTAATTC-GCCTGCCAGAAATATGATTTGTGCAAGAAAATAG--------------AACCATTAAAGAAACATTGGTGTAAAGAGTTCAGTAGAAACAGGATATCTTTGAGCAGAGAAGCGAAGCCAAAT--------GATGTTCCACATAAAGGACAAGGAGATTCAGATCCCGTACGGCTGATTTTAGAATTCTCTTTCTCCATGGAAAGCATTAGTTTGTGACATTGAATTAACCTGATTCAAATATATGCATAGATACCACCACACAGACCTGGGAATATCCCGTGGAACATGGAGGTTCTGTGACCCAG----GCCCTTAAATCTGGGTTGGATCTCACCTCTGGAAAAGGCAAAAAGCATAGTATAGGGTGTGTTTTTCTGGG------------------CTG---CTGATGAAATCACCT---------AGGTAGGACCTGGCACGAAGG---------------------------AGAGCCCAAGGATGCT------------CAATTGAATCTGAC--------TGTTTGGTGTTTAGGCCCTAGAAGCCAGGTTGTCA---------------------------------------------------TCTTCACGGGCTATGTTTTACATTTTA--TTTGAAGTCATGAAAATA-ACGCAGTGAAGATTGTGTTTTTTAT--GTAGTTAGGTGTCA--TCTGCCTGCTGCTTTGCCTGCACTGGGGG----TGG----ATCGAGTCTAAGGGGAGG------------CGGG-----GAGAGGTGGGCAGCAAATTCCCTTGCTTTTGTGGCAGCAACACCTAGTGGCAGAAAATGAGAGTGAGAAGAGAGAATGTGC------CTTTTCCAC-TTCAGCAACAGCCCAGAAAGTAAGCATGAATGTGTCTGCC-CTTCAGCTGCCCTAAAG----------------------------TTTAAAAAAATTTTTTTTAACTGGTAAGAAAATTAACTTCCAATCAAGAGGAAGGTCTTCCAATGGC-------AAATCTCC---AGTTCATGTT--------TTTCTGGTCTCTCTGAGAGATTT-AAGTGGAAATGTTG-----GCTCTCCCTACCAATCTGGTGGCAGCACTCCTGTTTACTGATGTGCTCGACAGGATTTGGGACGATAAC--ATTATGTTGCAGATAGTGAGGAATTCACTCCTTTATTTTTTGAATTAGGAATTTCACTGTTAACATCTTTGAATTAGGAGGGATATCTCCAAAGTCCCTTCCAGTTCCCAAACCCCAGATCTCTGATTTCTCAATGAGCAGGAATTGGGTTGAATGTGCAGGATATTATAT-TTCCAGAATATTCAGATGTTTCACCTGCTGAGAAAGGTGGATGAAGAGATATTTTAACTGAAG-GAGATCTCAGAACCAGTCTGTTTTCCGTGCAGCACCACCACACCATTCCTTCCTCCTTATCAGCAAACGTA------------TGGTAGCCGGCTGTCATTGGGAGATCGGGATATCAAAAATGGCATAACTAACCAAAAAAA--CAAACATGATGTTTCGTTTCAGGATGATGAAATTAACCAGCAGAGCCAGCTGGCTGAAAAGCTGAAGCAGCAGATGTTGGATCAGGATGAGGTAAAGAATGCAATA---TTTTTTT--TCACAAAG---------TTCTTCT--------ATTATTCTTTGTTGTTGATGTTTGTTCTAGAAATTTAATTTGTAAAGAAGCTTTTCAT--------------------------------------AATCACA----------------------------------------------------------------------------------GATTCATGTGGAAATTTCTTGCTAGATTTCCCTTCACTGCCTGTTACAAGCTGATTATCACTAAATTTCGAAAACAAATGTCTGACTTTCAAGAACCCCTGGTGTTTTGAGATT--CAGTAGCCAGCGGCTACACTTAGTACT----GGAAGAGCAGA i calJac3.chr6 C 0 C 0 s mm10.chr2 49725978 2371 + 182113224 ATTTCATGTATAAGAAAAATCCAACTACGAAATTAATTTCTGAAAAGTGCCTTGAAATCTTTTATC--------------------------TCAGAGTGAGCATGCTTAAACATGTCCTGAGAGATACACTCG-ACGTGCAGAAAGTACAGCA--------AGCACACC---TTATTCAGAAAGGCCTAGGAAA--TTACAGTGAAATCAGA-TAGACAACACTAATTCCTTAGA-AGGTTGCCCTCATAAGGGGCAAGCCTACTCGAAGGCTTGTCTCTA--AGCACTGATTTGCCTTCTCGGAG-----AGCTCTGTTTTAA-----CTCTCTGGATG----------------GTTTCCCATCACATCTT------------------AGCTTGTCACCTGTCGGGGAGGAAGGCTAC-ATCTTCAGGCTTTGCCAAGAGTGCCGTGTGCAAGCTCAA-------GCCACA---TCACCCTGTCCCTTCTTATTTTTGTCCGTCCCTTGGGGGCAGTTGTGGATTTTGGGTTGTTTTGCTTCGTTGCCTCGGGGAAGTGATG-----------AGGTTGAACTTTTTGGGTCTTTTATTTTAAGCTCTTTACTCTTCTTGTGCTGAGGAGCAGAAATATAAAATTGGTCCTTGTAACTGACATGCTAAATGTATGAAGCTGAAG-GAAAGCATGG-CCTAGAAAACAGTGAGTTAGCTGTGCAAGCGCCA--GTTCTTGGCAGTTTTGCTATGCTGTAATTTCTCTGATTCTTTTTGCCAGAAGGATTTGGCAAGGAGGGAAATAATCAATATTCTATT-CACCATGGAAGAAACATCGGTGTATAAAGTTCAGT--GCACACGAGCTTCCTGAGCATACTAGTGAGATCGAGTATATAGGAAAGACCAGAGACACAGGACGAGGGTGTGCAGAGCCTTCCCTGCACACGTGAGAGTGCTGGTGCTC--TGGAGGGTACCAG-CTACACCATCCGCTTAATCCCGTGCCGGTGATGGCGTAGACTCCACCATACATGGTGCAGAT--GTCTGTGGCAAAC--AGGTTCTGTGACCAGGCTCCGCCATTCACCT---GCCTCACCTCACCTCTGAAGCGGATCCAAAGTGCAGGAGAAGG-GTCCTTCAATGAGGAAAACACTGGCACAAACCTGTGTTTGAGGAAAAAAACTTGTGTTTGAGGAAAAAACCTGTCACAAAGACAATGTAATACACTGAGCTGTTATTTGACTGCTTGGGGGTGCCAGCCGAGACGGGCATTCCAATAGGACTTTTATAATGAAAGGAGATGTGAGCCT-GGAGCCACATTGTCA-------TTTTT--------------------------------------TTTTTCACAGAATGTGCTTAAAATTTCC--TTTGAAATCATGAAAACA-GAGCAGGAAAGGCCACATTCTTCCCTAGTGGTTCCGCCTCAAGCCTGCTGCCTGCCTGTCCTTCACTGGAGG----TGG-----------CTTGCTGGTGG------------GGGA-----GAGAGGCAGGCAG--AGCACTCTTGCTTTCTCAATAGCAACACCTAGTGGCAGTGAA--------------GAGAGCTGTC------GTTTTCC-----------------------------TGTGTGCT-----C-ACCCAGCCGGCTGCAGG-------------------------ACTTTGCTTGTTTTGCTTTTCAATTGGCAAGACTATTGG-TTGCAGTCAAGAGGGCCGTCTATTGGAGAA-------AACTCCACGGAAGCTCGAGTT--------TTTTTAC----TCTAAGT------AAATGGGCATGGTGTAGTAGCCCTTTCTTCCCGTCACTTGGCAACATTCCTGGTCACAGATGGGCTTGCCA-----------------------------------------------------------------------------GTTTACATCTTTATTTGGGGAAGGATGTCTCTGTAGTCCCTTTCAGTCCCGAAGTATGAGACCCCTGGTTTCTGGATGGGCAGGATTTGGGT--------------------T-CTCCAGG-----CAGATGTTACCTTTCCT-AGAAAGAACTCTACACGG------CAGATTACC-AAGCTCCTGGAA------TGGCCCCTG----------CTGCACTTTCC---CCATCTAATGAGTGAACTCGGGACTGGCCTCTTGGTGTCTGATTCTGGAAGGGGAACCAGGATGTCAAAACCGACACAACTAACTAAAAAT---TAAACATGATGTTTCATTTCAGGATGATGAAATTAACCAGCAGAGCCAGCTGGCTGAAAAGCTGAAGCAACAGATGTTGGATCAGGATGAGGTAACAGACACAATGAATTCTTTTT---TACAGAGGGGTTTTTTTTTTTCTCTCTCTCAATCACTTTTCGTTGATAATATTAGTCCTAGAAATACAGTTTGCAAATAGCCttttttttcttttttttttcttttttttaattgggtatttacttcatttacatttccaatactatcccaaaagtcccccacattctcccccacccactcgccacccacccCAAATAGCCTTTTTTTAAAACCTTAAAGCGCATGGAGATTTCTTGGTCGCCCTTCTCTCAGGGTCTGCTAAAGGTTGGTTGTGGCAATGTGTAGCCAGCAAGCTCCTGACTCTG---------TAGTACTCTGAGCCTCAGGGTTGCTCTGTGCCGCACTTAGTCTTTGGGGGGCGGGCAGA i mm10.chr2 C 0 C 0 s canFam3.chr19 50636002 2446 + 53741614 ATTTCAGATATATG-AACATTCAAGAACAAGAGTATTTTCTGAAAAGTGCTTTGGAATCTGTTATGTATGGACTAGACCTTAACAGTCAGCATCGGAGTGAG----------CTCGTTCTAAGGAATGCACTCGAGTGTATAGACG------TAGCCTGTGCAGCACATT---TTATTCTGGAGGTTTTGAAAAAATTT---TCAGGATTATGATAGACTATGCTCATTCCTTGGAGAAGTCGCCTTCACAGAGGCTGAGTGTAGTCTTGGCAGTGTCTCTGGTACAAGTGATTCGTGGTCT-TACAATGTAATCCCTGCTCCTCACATCCTTCCCAGATGGGCTGATGG--CCCTGTCTCCTAACGGTACCTC-AGAAATCACTGTA-CCTGCCTTGTCACCTGTCAGAGAGGAAGCCTGCGATCTTCAGGCTCCG-AGTGAACACAG---AAGAACAAAGGGCGGGCTTCACT-----G-TTGTGCTTCTCTTCTGATT-TCTGTCCCTT-------GTAGCCGTTGCTGATGTGT------------CCCAGGGGAAGGGATGGCAGCTCCCTGATGTTAAACTCCTCCAGTCTTTTATGTTAAGTTGTTTAATATTTATGTGCCAAGGAACATAAACACAAAATTGTTCCTGGTAACTGACGTTCTAAGTTTATAAAGTAGAAGAGGAAATAT-GCCCTACAGAGTAGTCTCCTAGTTGTGCAAGTACCATTTTTTTTGGCAGTTTCACTCTGGTGTAATTTCCCTAATTC-TCCTGCCAGAAATTGGATTTGGGGAGGAAAGTCATAAGTATTTTGTTGAACCATTAAAGGAACATTGGAGTGAAAAGTTCGGTGGAAACAAGG-CTCCCTGAACAGAAAAATAAAGCCAAAA--------GGTGTCCTCCACAAAGGACAATGAGATACAGATCTTGTAATCCTGATTTTAGAATTTTCTTGCTCTATGGAAAG--------TGTCACACGGAGTCCGTCTGATTTAAATGTATGCGTAGACCCCACCAAATAGGCCAGAGAATATCCCATGGACAAGTGCGGTTCTACGCCCCAG----GCCCTTGAGT-----TCACCCCTGAACACTGGAAAGGGCAGAGGGTGTGGCGC---GTGGGTTTTTACAAG------------------CTG---CC-CTGAGGACGCCT---------GGGTGGCACCTGGCAC--AGA---------------------------GGGACCCAAGGATACG-----------------GAATCCGACTC------TGCTTGGGGTTTAAAGCCCGGAAG---GGTTGTCAAATGGGATTTTCCCTGTTTGTAAGGGAGGGATACATGTGAAGCCAAGTCGTTCTCAGCAGGCTAGGCGTCACATTTGCGTTTTGAATTCATGACAGTGTTTGTCGGGAAGGCTGAGCCTGCTCT--G--GTTAAAGGCTG--TCCACCCGCCGCTCTGCCCGCACTGGGGGGACCTGGGGGCACCGCACTGGGGGAGCAGACGCGATTGCCCTGGGCGGCCGGGCGGCGGGAGGCGCGTAGCTCTGGCTTTGGCGCAGCAGCACCTAGTGGCAGCAAGTGAGAGCGAGGGAAGCACAGTGGAGAGGAGGTTTCCCACTTTTAACGATAGGCCGGAAAGGAAGCCCTCATGTTTCTGCCTCCCCCACTACCTTGAGT-------------------TTTTTTTTGTTGTTGCTGTTTTTTTCAAACTGGCAAGAAAATTAACTTCTAATCAAGAGGGAGAGCTGCTCATGCCCAAGATTAATTCTCT---AGTGCATGTTTTCCAATCTCTCTAA-----CTAAGAGATTTGAAGTGGAAATATTG-----GTCTCTCCTACCGATCATGTGGCAGCATTCCTGGTCATTGATGTGTTTGACGAGATTTGGAACATGAATATATTACAGTGCAGATGGTTAGAAGTTCACTGTCTTATTTTTT---------------TTATTAGCGTCTTTGAACTGGGAGGCATAGCTCCAAAGTCCCTTTCAATTCCTAAACCCTAGCTCTCTGATTTCTGGATGAGCAGAAATTGAGTTGAATGTGCAGGCTATTCTATATCCCAGAAAACCCAGATGTTTCACCTGCTGAGAAAGGTGGGCACAGAGGTGTTTTAACCCAATCAAGATCCCAGAGCCAATCTCTCATCTATGGGGAAGCAC--CACCATTCCCCTCATCTTATTAGCAAGCTTACAGCTGGCATCCTGGTATCCCACTGTCGTCGGGAAGCCAGGATATCAAAAATGACATAACTAACCCCAAAACATTAAACATGATGTTTCGTTTCAGGATGATGAAATTAACCAGCAGAGCCAGCTGGCTGAAAAGCTAAAGCAACAGATGTTGGATCAGGACGAGGTAAAGAATGCAATAAATTTTTTTT----ATGAAG---------TTCTCTT--------ATTAGTCTTTGTTGTTGATGTTTGTTCCAGAAATTTAATTTGCAAAGAATTTTTTCAA-------------------------------------AAATCATT----------------------------------------------------------------------------------GAATCATGTGGACATTTCTTGGTAGATTTCCTTTCAGTGCCTGTTAAAAGCTGAT----------TTTAGAAAATAAATGTCTGACTTTGTAGAGCTC-TGAGGTTTTGAGAGT--GAGTAGCTGGTTGCTGCAGTGAGTCTT----TGAAGTGCAGA i canFam3.chr19 I 4 I 17 a score=241709.000000 s hg38.chr2_GL582966v2_alt 51260 82 + 96131 GACCTTTGGTTGGGTGATCAAGCAAGGATGATCCttttttattttta-ttt-ttttgagacagggtct--ctctgttgtccaggct s panTro4.chr2B 153163997 82 + 247518478 GACCTTTGGTTGGGTGATCAAGCAAGGATGATCCttttttattttta-ttt-ttttgagacagggtct--ctctgttgtccaggct i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38370500 82 + 135000294 GACCTTTGGTTGGGTGATCAAGCAAGGATGATCCttttttattttta-ttt-ttttgagacagggtct--ctctgttgtccaggct i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82323094 82 - 85365473 GACCTTTAGTTGGGTGATCAAACAAGGATGATCCttttttattttta-ttt-ttttgagacagggtct--ctctgttgtccaggct i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11934384 83 + 106825570 GACCTTTGGTTGGGTGATCAGGCAAGGATGATCCttttttattttta-tttgttttgagacagggtct--ctctgttgtccaggct i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37638538 83 + 132586672 GACCTTTGGTTGGGTGATCAGGCAAGGATGATCCttttttattttta-tttgttttgagacagggtct--ctctgttgtccaggct i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11295782 84 + 104110932 GACCTTTGGTTGGGTGATCAGGCAAGGatgatccttttttatttttatttttttttgagacaggttct--ctctgttgtccaggct i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34393852 83 + 128595539 GACCTTTGGTTGGGTGATCGGGCAAGGATGATCCttttttattttta-ttttttttgagacagggtct--ctctgttgtccaggct i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87880572 83 - 158406734 GACCTTTGGTTCGGTAATCGCGCAAGGATGATCCttttttgttttta-tt--ttttgagatgagatctccctctgttgtccaggct i calJac3.chr6 C 0 C 0 s mm10.chr2 49728349 65 + 182113224 CACCTCTGTCCCGGGG--------AGGGTGGTGCTTGCTCA-------GT--CTCTGCAGCAGCATCC--CGTTATTTT--AGGCT i mm10.chr2 C 0 I 395 e canFam3.chr19 50638448 17 + 53741614 I a score=241551.000000 s hg38.chr2_GL582966v2_alt 51342 79 + 96131 ggaatgcagtgg-tgcaatcatggctcactgcaacctccagagctcaaatgatcttcccgcctaagactctcaagtagct s panTro4.chr2B 153164079 79 + 247518478 ggaatgcagtgg-tgcaatcatggctcactgcaacctccagagctcaaatgatcttcccgcctaagactctcaagtagct i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38370582 79 + 135000294 ggaatgcagtgg-tgcaaccgtggctcactgcaacctccagggctcaagtgatcttcccacctaagactctcaggtagct i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82323176 80 - 85365473 cgaatgcagtggttgcaattatggctcactgcaacctccagggctcaagtgatcttcccgcctaagactctcaagtagct i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11934467 79 + 106825570 ggaatgcagtgg-tgcaatcatggctcactgcaacctccagggctcaagtgatcttcccgcgtaagactctcaagtagct i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37638621 79 + 132586672 ggaatgcagtgg-tgcaatcatggctcactgcaacctccagggctcaagtgatcttcccgcgtaagactctcaagtagct i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11295866 79 + 104110932 ggaatgcagtgg-tgcaatcatggctcactgcaacctccagggctcaagtgatcttcccgcgtaagactctcaagtagct i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34393935 79 + 128595539 ggaatgcagtgg-tgcaatcatggctcactgcaacctccagggctcaagtgatcttcccgtgtaagactctcaagtagct i chlSab2.chr10 C 0 I 193 s calJac3.chr6 87880655 79 - 158406734 ggagtgcagtgg-tacgatcgtggcgcactgcaacctccaaggctcaggtgatcttcctgcccaagactcccaagtagcc i calJac3.chr6 C 0 C 0 e canFam3.chr19 50638448 17 + 53741614 I e mm10.chr2 49728414 395 + 182113224 I a score=486752.000000 s hg38.chr2_GL582966v2_alt 51421 162 + 96131 aagactacaagaatgtgccaccatacctagctaattttttaatattttgagacagagtttctctatgttggtcagggtgatcttgaactcccggcctctggcttggctcctgccttggctcccaaagcactgggattacaggtgtgagccactgcacctggc s panTro4.chr2B 153164158 162 + 247518478 aagactacaagaatgtgccaccatacctagctaattttttaatattttgagacagagtttctctatgttggtcagggtgatcttgaactcccggcctctggcttggctcctgccttggctcccaaagcactgggattacaggtgtgagccactgcacctggc i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38370661 162 + 135000294 aagactacaagaatgtgccaccatacctagctaattttttaatattttgagacagagtttctctatgttgctcagggtgatcttgaactcctggcctctagcatgcctcctgccttggctcccaaagcactgggattacaggtgtgagccaccgcacctggc i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82323256 162 - 85365473 aagactacaagaatgtgccaccatacctagctaattttttaatattttgagacagagtttctctatgttgctcagggtgaccttgaactcctggcctctagcatgcctcctgccttggctcccaaagcactgggattacaagtgtgagccaccgcacctggt i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11934546 162 + 106825570 aagactgcaagagtgtgccaccataccttgctagttttttaatattttaagacagagtttctctgtgttgctaagggtgatcttgaactcctggtctcaagcatgcctcctgccttggctcccaaagcactgggattacaggtgtgagccaccacacctggc i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37638700 162 + 132586672 aagactgcaagagtgtgccaccatacctagctagttttttaatattttaagacagagtttctctgtgttgctaagggtgatcttgaactcctggtctcaagcatgcctcctgccttggctcccaaagcactgggattacaggtgtgagccaccacacctggc i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11295945 162 + 104110932 aagactgcaagagtgtgccaccatacctagctagttttttaatattttaagacagaatttcTCTATGTTGCTAaaggtgatcttgaactcctggcctcaagcatgcctcctgccttggctcccaaagcactgggattacaggtgtgagccaccgcacctggc i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34394207 162 + 128595539 aagactgcaagagtgtgccaccatacctagctagttttttaacattttaagacagagtttctctatgttgctaagggtgatcttgaactcctggcctcaagcatgcctcctgccttggctcccaaagcactgggattacaggtgtgagccaccgcacctggc i chlSab2.chr10 I 193 C 0 s calJac3.chr6 87880734 162 - 158406734 aagactacaagagtgtaccatcatacatagctaatgttttaatattttgaggcagagttttgccatgttgctcagggtgatcttgaactcctggcctcaagcttgcctgctgccctggttcccaaagcattgggattataggtgtgagccacctcgttgggc i calJac3.chr6 C 0 C 0 e canFam3.chr19 50638448 17 + 53741614 I e mm10.chr2 49728414 395 + 182113224 I a score=133021.000000 s hg38.chr2_GL582966v2_alt 51583 42 + 96131 cTTGGGCAAGGATGATTCTGCCTCCTAATACCCAG----CAATGCT--- s panTro4.chr2B 153164320 42 + 247518478 cTTGGGCAAGGATGATTCTGCCTCCTAATACCCAG----CAATGCT--- i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38370823 42 + 135000294 cTTGGGCAAGGATGATTCTGCCTCCTAATACCCAG----CAATACT--- i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82323418 42 - 85365473 cTTGGGCAAGGCTGATTCTGCTTCCTAATACCCAG----CAATACT--- i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11934708 42 + 106825570 cTTGGGCAAGGATGATTCTGCCTCCAAATACCCAG----CAATACT--- i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37638862 42 + 132586672 cTTGGGCAAGGATGATTCTACCTCCAAATACCCAG----CAATACT--- i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11296107 42 + 104110932 cttgggCAAGGATGATTCTGCCTCCAAATACCCAG----CAATACT--- i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34394369 42 + 128595539 cTTGGGCAAGGATGATTCTGCCTCCAAATACCCAG----CAATACT--- i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87880896 35 - 158406734 cTTGGAAAAGGATGATTCTGCCTCCCA-----TAG----C--TACT--- i calJac3.chr6 C 0 C 0 s canFam3.chr19 50638465 49 + 53741614 CTTGGGCAAGGATGATTCTGATTCCACATACCCAGTGCCCAGCACTCCT i canFam3.chr19 I 17 C 0 e mm10.chr2 49728414 395 + 182113224 I a score=3681896.000000 s hg38.chr2_GL582966v2_alt 51625 1051 + 96131 -----------GTGACCTGTTGTTTGAGTCCTACTTCAGTT--------------TTGCAA-TCAGCTTGCTCAGATCTTTGATATACACCATGT--TCTCCTG--CTGTCCTGTA-GG-------GATACACAAACAAAAACAAAACTAGA-AGGTAGAGGA-GGGGAAGGCAAAGAGAACGGGGC-CCGAGTACTGCGTCAGCATG--TTTGATACACTAAAAAGGAGGCAAA--------------------------TTGTTTTCAG-------TCTCTCCCCAAA-GGCATTCAGTTCTTCAGCAAGTGTTTTTACTACATTGTGTGTTGCCAAGTATTTTACAAACAAGAACCTAAGCAAAGGATAGCCAGCCAACTTATCAAACATGCACAATTAATAATTCCCTTGCTGAGGACCGTTTAAG-TG----TTGTTTTCTTTTGTGCTTTAAGTTGCTTTCTGCTTCGTTGCTGAAATGCTATGGATTGGATCCCACTGTGCAATGACAGCAGGT-GCCTGGGTTTCTGTCCTCAATCCCAGGCCTCTGTAGGCATAAAGGACTCTGTAACCATT------TCCTTCCTCTTTGTTCCCTTTCATCTCTTTAGGACAATGATTACCTCCCCTGCCCAAACACTTCCCTTGGTAGGGAGATAATCTACACTTTTGTAATCAGGTGAACCATATTT-CGTTGATCTCTCTCTCTTAGCTATAGTCGAGGCCTTCCATTTGCTTGA-GTTTCCTGCCCTCTACCTCCCA-TTCTACTCC--AGTTTCACCCACATTGGCACAG-CTGCCTGGGATAAACTTTACTTCTTGTTACTGTTAAAACTCCTTAACATTTTTCTTTTTCTATACTATCAAGGCAGTATCTGTTCAATAT-AGGAAAATCAA-------CTTAGGAACAAAGATAATG-------AGAGCGTCGGCAAGCCCAGACATTCGCTTTTAACTAAAGATACTGTTTGGGGTACATCCTTCTATATCTTCATGATGGATGTT-AAAAAAAAGG--TGACTGACCACTGTTGTATACTGTTTTAGTTGATTGTGAAGTCAACCAGTTTACAATGTGAAATCCTGATAACACTT--AAAAATTATGTAAGTGTTATTCCTTGTCATT-TCCTTGGAAACGACTCTC s panTro4.chr2B 153164362 1052 + 247518478 -----------GTGACCTGTTGTTTGAGTCCTACTTCAGTT--------------TTGCAA-TCAGCTTGCTCAGATCTTTGATATACACCATGT--TCTCCTG--CTGTCCTGCA-GG-------GATACACAAACAAAAACAAAACTAGA-AGGTAGAGGA-GGGGAAGGCAAAGAGAACGGGGC-CCGAGTACTGCGTCAGCATG--TTTGATACACTAAAAAGGAGGCAAA--------------------------TTGTTTTCAG-------TCTCTCCCCAAA-GGCATTCAGTTCTTCAGCAAGTGTTTTTACTACATTGTGTGTTGCCAAGTATTTTACAAACAAGAACCTAAGCAAAGGATAGCCAGCCAACTTATCAAACATGCACAATTAATAATTCCCTTGCTGAGGACCGTTTAAG-TG----TTGTTTTCTTTTGTGCTTTAAGTTGCTTTCTGCTTCGTTGCTGAAATGCTATGGATTGGATCCCACTGTGCAATGACAGCAGGT-GCCTGGGTTTCTGTCCTCAATCCCAGGCCTCTGTAGGCATAAAGGACTCTGTAACCATT------TCCTTCCTCTTTGTTCCCTTTCATCTCTTTAGGACAATGATTACCTCCCCTGCCCAAACACTTCCCTTGGTAGGGAGATAATCTACACTTTTGTAATCAGGTGAACCATATTT-CGTTGATCTCTCTCTCTTAGCTATAGTCGAGGCCTTCCATTTGCTTGA-GTTTCCTGCCCTTTACCTCCCA-TTCTACTCC--AGTTTCACCCACATTGGCACAG-CTGCCTGGGATAAACTTTACTTCTTGTTACTGTTAAAACTCCTTAACATTTTTCTTTTTCTATACTATCAAGGCAGTATCTGTTCAATAT-AGGAAAATCAA-------CGTAGGAACAAAGATAATG-------AGAGCGTCGGCAAGCCCAGACATTCGCTTTTAACTAAAGATACTGTTTGGGGTACATCCTTCTATATCTTCATGATGGATGTTAAAAAAAAAGG--TGACTGACCACTGTTGTATACTGTTTTAGTTGATTGTGAAGTCAACCAGTTTACAATGTGAAATCCTGATAACACTT--AAAAATTATGTAAGTGTTATTCCTTGTCATT-TCCTTGGAAACGACTCTC i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38370865 1052 + 135000294 -----------GTGACCTGTTGTTTGAGTCCTACTTCAGTT--------------TTGCAA-TCAGCTTGCTCAGATCTTTGATATACACCATGT--TCTCCTG--CTGTCCTGTA-GG-------GATACACAAACAAAAACAAAACTAGA-AGGTAGAGGA-GGGGAAGGCAAAGAGAACAGGGC-CCGAGTACTGCGTCAGCATGTATTTGATACACTAAAAAGGAGGCAAA--------------------------TTGTTTTCAG-------TCTCTCCCCAAA-GGCATTCAGTTCTTCAGCAAGTGTTTTTATTACATTGTGTGTTGCCAAGTATTTTACAAACAAGAACCTAAGCAAAGGATAGCCAGCCAACTTATCAAACATGCACAATTAATAATTCCCTTGCTGAGGACCGTTTAAG-TG----TTGTTCTCTTTTGTGCTTTAAGTTGCTTTCTGCTTCGTTGCC-AAATGCTATGGATTGGATCCCACTGTGCAATGACAGCAGGT-GCCTGGGTTCCTGTCCTCAGTCCCAGGCCTCTCTAGGCATAAAGGACTCCGTAACCATT------TCCTTCCTCTTGGTTCCCTTTCATCTCTTTAGGACAATGATTACCTCCCCTGCCCAAACACTTCCCTTGGTAGGGAGATAATCTACACTTTTGTAATCAGGTGAACCATGTTT-CGTTGATCTCTCTCTCTTAGCTATAGTCGAGGCCTTCCATTTGCTTGA-GTTTCCTGCCCTCTACCTCCCA-TTCTACTCC--AGTTTCCCCCACATTGGCACAGCCTGCCTGGGATAAACTTTCCTTCTTGTTACTGTTTAAACTCCTTAACATTTTTCTTTTTCTATACTATCAAGGCAGTATCTGTTCAATAT-AGGAAAATCAA-------TGTAGGAACAAAGATAATG-------AGAGCGTCGGCAAGCCCAGACATTCGCTTTTAACTAAAGATACTGTTTGGGGTACATCCTTCTATATCTTCATGATGGATGTT--AAAAAAAGG--TGACTGACCACTGTTGTATACTGTTTTAGTTGATTGTGAAATCAACCAGTTTACAATGTGAAATCCTGATAACATTT--AAAAACTATGTAAGTGTTATTCCTTGTCATT-TCCTTGGAAACGACTCTC i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82323460 1048 - 85365473 -----------GTGACCTGTTGTTTGAGTCCTACTTCAGTT--------------TTGCAA-TCAGCTTGCTCAGATCTTTGATATACACCATGT--TCTCCTG--CTGTCCTGTA-GT-------GATACACAAACAAAAACAAAACTAGA-AGGTAGAGGA-GGGGAAGGCAAAGAGAATGGGGC-CCGAGTACTGCATCAGCATGTATTCCATACACTAAAAAGGAGGCAAA--------------------------TTGTTTTCAG---------TCTCCCCAAA-GGCATTCAGTTCTTCAGTAAGTGTTTTTATTACATTGTGTGTTGCCAAGTATTTTACAAACAAGAACCTAAGCAAAGGATAGCCAGCCAACTTATCAATCATGCACAATTAATAATTCCCTTGCTGAGGACCGTTTAAA-TG----TTGTTCTCTTTTGTGCTTGAAGTTGCTTTCTGCTTCGTTGCTGAAATGCTATGGATTGGATCCCACTGTGCAATGACAGCAGGT-GCCTGGGTTCCTGTCCTCAGTCCCAGGCCTCTGTAGGCATAAAGGACTCTGTAACCATT------TCCTTCCTCTTTGTTCCCTTTCATCTCTTTAGGACAATGATTACCTCCCCTGACCAAACACTTCCCTTGGTAGGGAGATAAGCTACACTTTTGTAATCAAGTGTACCATATTT-CATTGATCTCTCTCTCTTAGCTGTAGTCAAGGCCTTCCATTTGCTTGA-GTTTCCTGCCCTCTACCTCCCA-TTCTACTCC--AGTTTCCCCCACATTGGCACAG-CTGCCTGGGATAAACTCTCCTTCTTGTTACTGTTGAAACTCCTTAGCGTTTTTCTTTTTCTATACTATCGAGGCAGTATCTGTTCAATAT-AGGAAAATCAA-------TGTAGGAACAAAGATAATG-------GGAGCGTCAGCAAGCCCAGACATTCACTTTTAACTAATGATAC-GTTTGGGGTACATCCTTCTATATCTTCAGGATGGATGTT--AAAAAAAGG--TGACTGATCGCTGTCGTATACTGTTTTAGTTGATTGTGAAGTCAACCAGTTTACAATGTGAAATCCTGATAACATTT--AAAAACTATGTAAGTG-GATTCCTTGTCATT-TCCTTAGAAACGACTCTC i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11934750 1050 + 106825570 -----------GTGTCCTGTTGTTTGAGTCCTACTTCAGTT--------------TTGCAA-TCAGCTGGCTCAGATCTTTGATATACACCATGT--TCTCCTG--CTGTCCTGTA-GG-------GATACACAAACAAAAACAAAAATAGA-AGGTAGAGGA-GGGGAAGGCAAAGAGAACGGGGC-CCGAGTACTGCGCCAGCATGTATTTAATACACTAAAAAGGAGGCAAA--------------------------TTGTTTTCAG-------TCTCTCCCCAAA-GGCATTCAGTTCTTCAGTAAGTGTTTTTATTACACTGTGTTTCGCCAAGTATTTTACAAACAAGAACCTAAGCAAAGGATAGCCAGCCAACCTATCAAACATGCACAATTAATAATTCCCTTGCTGAGGACCATTTAAG-TG----TTGTTCTCTTTTGTGCTTTAAGCTGCTTTCTGCTTCGTTGCTGAAATGCTATGGATTGAATCCCACTGTGCAATGACAGCAGGT-GCCTGGGTTCCTGTCCTCAGTCCCAGGCCTCTGTAGGCATAAAGGACTCTGTAACCATT------TCCTTCCTCTTTGTTCCTCTTCATCTCTTTAGGGCAATGATTACCTCCCCTGCCCAAACACTTCCCTTGATAGAGAGACAAGCTACACTTTTATAATCAGGTGAACCATATTT-CCTTATTCTCTCTCTCTTAGCTATAGTCGAGGCCTTCCATTTGCTTGA-GTTTCCTGCCCTCTACCTCCCA-TTCTACTCC--AGTCTCCCCAACATTGGCACAG-CTGCTTGAGATAAACTTTCCTTCTTGTTACTGTTAAAACTCCTTAACATTTTTATTTTTCTATACTATCAAGGCAGTATCTGTTCAATAA-AGGAAAACCAA-------TATAGGAACAAAGATAGTG-------AGAGCATCGGCAAGCCCAGATATTTGCTTTTAACTAATGATAATGTTTGGGGTACATCCTTCTATATCTTCATGATGGATGTT--AAAAAAAGG--TGACCGATCACTCTTGTACACTGTTATAGTTGATTGTGAAGTCAACCTGTTTACAATGTGAAATCCTGATAACATGT--AAAAACTATGTAAGTGTTATTCGTTGTCATT-TCCTTGGAAATGA--CTC i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37638904 1050 + 132586672 -----------GTGTCCTGTTGTTTGAGTCCTACTTCAGTT--------------TTGCAA-TCAGCTGGCTCAGATCTTTGATATACACCATGT--TCTCCTG--CTGTCCTGTA-GG-------GATACACAAACAAAAACAAAAATAGA-AGGTAGAGGA-GGGGAAGGCAAAGAGAACGGGGC-CCGAGTACTGCGCCAGCATGTATTTAATACACTAAAAAGGAGGCAAA--------------------------TTGTTTTCAG-------TCTCTCCCCAAA-GGCATTCAGTTCTTCAGTAAGTGTTTTTATTACACTGTGTTTCGCCAAGTATTTTACAAACAAGAACCTAAGCAAAGGATAGCCAGCCAACCTATCAAACATGCACAATTAATAATTCCCTTGCTGAGGACCGTTTAAG-TG----TTGTTCTCTTTTGTGCTTTAAGCTGCTTTCTGCTTCGTTGCTGAAATGCTATGGATTGAATCCCACTGTGCAATGACAGCAGGT-GCCTGGGTTCCTGTCCTCAGTCCCAGGCCTCTGTAGGCATAAAGGACTCTGTAACCATT------TCCTTCCTCTTTGTTCCTCTTCATCTCTTTAGGGCAATGATTACCTCCCCTGCCCAAACACTTCCCTTGATAGAGAGACAAGCTACACTTTTATAATCAGGTGAACCATATTT-CCTTATTCTCTCTCTCTTAGCTATAGTCGAGGCCTTCCATTTGCTTGA-GTTTCCTGCCCTCTACCTCCCA-TTCTACTCC--AGTCTCCCCAACATTGGCACAG-CTGCTTGAGATAAACTTTCCTTCTTGTTACTGTTAAAACTCCTTAACATTTTTATTTTTCTATACTATCAAGGCAGTATCTGTTCAATAA-AGGAAAACCAA-------TATAGGAACAAAGATAGTG-------AGAGCATCGGCAAGCCCAGATATTTGCTTTTAACTAATGATAATGTTTGGGGTACATCCTTCTATATCTTCATGATGGATGTT--AAAAAAAGG--TGACCGATCACTCTTGTACACTGTTATAGTTGATTGTGAAGTCAACCTGTTTACAATGTGAAATCCTGATAACATGT--AAAAACTATGTAAGTGTTATTCGTTGTCATT-TCCTTGGAAATGA--CTC i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11296149 1052 + 104110932 -----------GTGTCCTGTTGTTTGAGTCCTACTTCAGTT--------------TTGCGA-TCAGCTGGCTCAGATCTTTGATATACACCATGTTCTCTCCTG--CTGTCCTGTA-GG-------gatacataaacaaaaacaaaaataga-aggtAGAGGA-GGGGAAGGCAAAGAGAACGGGGC-CCGAGTACTGCGCCAGCATGTATTTAATACACTAAAAAGGAGGCAAA--------------------------TTGTTTTCAG-------TCTCTCCCCAAA-GGCATTCAGTTCTTCAGTAAGTG-TTTTATTACACTGTGTTTCGCCAAATATTTTACAAACCAGAACCTAAGCAAAGGATAGCCAGCCAACCTATCAAACATGCACAATTAATAATTCCCTTGCTGAGGACCGTTTAAG-TG----TTGTTCTCTTTTGTGCTTTAAGCTGCTTTCTGCTTCGTTGCTGAAATGCTATGGATTGAATCCCACTGTGCAATGACAGCAGGT-GCCTGGGTTCCTGTCCTCAGTCCCAGGCCTCTGTAGGCATAAAGGACTTTGTAAccatt------tccttcctctttgttCCTCTTCATCTCTTTAGGGCAATGATTACTTCCCCTGCCCAAACACTTCCCTTGATAGAGAGACAAGCTACACTTTTATAATCAGGTGAACCATATtt-ccttattctctctctcttagCTATAGTCGAGGCCTTCCATTTGCTTGA-GTTTCCTGCCCTCTACCTCCCATTTCTACTCC--AGTCTCCCCAACATTGGCACAG-CTGCCTGAGATAAACTTTCCTTCTTGTTACTGTTAAAACtccttaacatttttatttttctatactaTCAAGGCAGTATCTGTTCAATAT-AGGAAAACCAA-------TATAGGAACAAAGATAATG-------AGAGCATCGGCAAGCCCAGATATTCGCTTTTAACTAATGATAATGTTTGGGGTACATCCTTCTATATCTTCATGATGGATGTT--aaaaaaaGG--TGACCGATCACTCTTGTACACTGTTTTAGTTGATTGTGAAGTCAACCCGTTTACAATGTGAAATCctgataacattt--aaaaactatgtaAGTGTTATTCGTTGTCATT-TCCTTGGAAATGA--CTc i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34394411 1051 + 128595539 -----------GTGTCCTGTTGTTTGAGTCCTACTTCAGTT--------------TTGCAA-TCAGCTGGCTCAGATCTTTGATATACACCATGT--TCTCCTG--CTGTCCTGTA-GG-------GATACACAAACAAAAACAAAAATAGA-AGGTAGAGGA-GGGGAAGGCAAAGAGAACGGGGC-CCGAGTACTGCGCCAGCATGTATTTAATACACTAAAAAGGAGGCAAA--------------------------TTTTTTTCAG-------TCTCTCCCCAAA-GGCATTCAGTTCTTCAGTAAGTGTTTTTATTACACTGTGTTTCGCCAAGTATTTTACAAACAAGAACCTAAGCAGAGGATAGCCAGCCAACCTATCAAACATGCACAATTAATAATTCCCTTGCTGAGGACCGTTTAAGTTG----TTGTTCTCTTTTGTGCTTTAAGCTGCTTTCTGCTTCGTTGCTGAAATGCTGTGGATTGAATCCCACTGTGCAATGACAGCAGGT-GCCTGGGTTCCTGTCCTCAGTCCCAGGCCTCTGTAGGCATAAAGGACTCTGTAACCATT------TCCCTCCTCTTTGTTCCTCTTCATCTCTTTAGGGCAATGATTACCTCCCCTGCCCAAACACTTCCCTTGATAGAGAGACAAGCTACACTTTTATAATCAGGTGAACCATATTT-CCTTATTCTCTCTCTCTTAGCTATAGTCGAGGCCTTCCATTTGCTTGA-GTTTCCTGCCCTCTACCTCCCA-TTCTACTCC--AGTCTCCCCAACATTGGCACAG-CTGCCTGAGATAAACTTTCCTTCTTGTTACTGTTAAAACTCCTTAACATTTTTATTTTTCTATACTATCAAGGCAGTATCTGTTCAATAT-AGGAAAACCAA-------TATAGGAACGAAGATAATG-------AGAGCGTCGGCAAGCCCAGATATTTGCTTTTAACTAATGATAATGTTTGGGGTACATCCTTCTGTATCTTCATGATGGATGTT--AAAAAAAGG--TGACCGATCACTCTTGTACACTGTTTTAGTTGATTGTGAAGTCAACCCGTTTACAATGTGAAATCCTGATAACATGT--AAAAACTATGTAAGTGTTATTTGTTGTCATT-TCCTTGGAAATGA--CTC i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87880931 999 - 158406734 -----------GTGTCCTGTTGTTTGAGTACTATTTCAGTT--------------TTGCAG--CAGCTGTCTCAGGTCTTTGATAT--ACCATGT--TCTCCTG--CTGTCCTGCA-GG-------GAAAC----ACAAAAACAAAACTAGA-AGGTAGAAGAGGGGGAAGGCAAAGAGAATAGGGC-CTGAGTACTGTATCAGCATATATTTGATACACTGAAAACGAGGGAAAT-------------------------TTGTTTTCAG-------TCTCTCCCAAAA-GGGATTCAGTTCTTCAGTAAGTGTTCTTATTACATTGTGTTTTGCCAAGTATTTTACAAACAAGAACCTGAGCAAAGGAGAGCCAGCCAACCTATCAAACGTGCACAATTAGTACTCCGCTCTCTGAGGACTGTTTAAG-TG----TTGTTCTCTTTTGTGCTTTAAGCTGCTTTCTGCTTCATTGCTTAAATGCTGTGGATTGGATCCCACCATGCAATGACTCCA--T-GCCTGGAGTCCTGTCCTCAGTCCCAGGCCTCT------------------GTAACCATT------TCCTTCCCCTTTGTTCCCCTTCATCTCTTTAGGACAATGATTACCTCCCCTTCTCAAATACTTCCCTTTGTAGGGAGATCATCTACACTTTTGTAATTAGGTGAACTATATTT-CATTGA----TCTCTCTTAGCTATAGTCGAGGCCTTCCATTTGCTTGT-GTTTCCTGCCTTCTACCTCCCA-TTCTACTCT--AGTTTCCCCTACGTTGACACAG-CTGCCTGGGATAAACTTTCCTTCTTGTTACTATTAAAACTTCTTAACATTTTTCTTTTTCTATACTATCAAGACAATATCTGTTCAATAT-AGGAAAATCAA-------CGTAGGAACAAAGATAATG-------AGAGCGTCGGCAAGCCCAGACATTTGCTTTTAACTA---ATAATGTTTGGGGTACATGCTTTTGTACATTCATGATGGATGCT--AAAAAAAAGGCTGACCGATTGCTCTTTTACACTGTTTTAGTTGATTGTGAAGTCAACCAGTGTACAATGTGAAATCCTGATAACATTT--AAAAACGATGTAAGTGTTATTTT------------------------CTT i calJac3.chr6 C 0 C 0 s mm10.chr2 49728809 992 + 182113224 -----------gtcgtctgttgatgggcacctaggctggttccgtaacctggcagttgcaa-aaggctggtgtgtgt-tttagcatagactgtgt--cctcctGTTCTGCCCTACAGGG-------GATACACAAACAAAATCAAAAGTAGA-CCATCAAAGA--GGAAAGGCA-----GCTGGGGC-CGTAGTGCTGC--TACTCTGTATTTGGTACACTAAAAAGGAGGCCAC--------------------------CTGGTTTCAGCACCCCCCCGCCCCCCGCC-GGCATTCATTTCTACCACAAATGTCTTTTTTGCAC--CGTTCTGCAGTGGATTTTACAAACAGGAACCCAAGCCAAGCACAGCCAGCCGATCTACCAGAGAC---------AGCATTCTCTTGCTGA-GATCACCTAAG-TA----TTTTTCTCTTTTGTGCTTTAAG-------ATGCTTCGTTGCTAAAGTGCCTTTGGTTGGCT-----TATACAGTGCCGGCAGGT-GGCAGAGATCGATGTCCCAGTCTCAGCCCCC---ACACCCAGGGAGCTCTGTAACCATT------TCCTTCCTTTCTGCTTCCCATCATCTTTCCAGTGTAATGAGTG-------------------TGGTTCTGCAGGGAGGCAGGCTGTGTCTTTGGAGTCATGTGAACCCTGTTT-AATAGA--TTCCTACCTTAGCTGTGGTTGTGGCC--------ACTTAT-GTTCCCTGTTGTCCGCTTCCAC-ATGTACTCT---GCATCTCCAAGAGTGGTTCAG-CTGCCTTGGATCAATT---CCTTTTGTTACCATTCAGACT--TTAATATTTTTTCCTT---------GCAAACTGATAAATGTCCATT---AAGGAAATCAG--------ACAATAACAATGGTAACAGCTACATGAAACATCCACAAACCCAGGACCTCATTTTACCATGTGTATAGATTTTAGGGTATATTCTTCTATACAGTTCTGATAAACAGT--AAAGGAAAG--TAACT--TCATT-TCAAGTACTGTT-TGGGTGATTTTGAAATGAACTTAAATACAATATGAAATTGTGGCACTGTTTCCAGCGGCTCTGCCAGTGT-----ACTGCCA-C-TCATTAAAAGCAGTTCTC i mm10.chr2 I 395 C 0 s canFam3.chr19 50638514 1090 + 53741614 CCTGTTGCTGGGTATTTTCTTTTTTTTTTTTTTTTCCAGCT--------------TTGCAAATCAGCCAGCTCAGGTCTTTGATGCACACTGTGT--TCTCATG--CTATCTCGTA-GGAAGTAAAAAAAAAAAAATAAAAACAAAAGTAGAGATGGAGGGGA-GGGTGAAGCAAAGAGGAAGGGGCTCCAAGGGCTCAACTGGTATGTGTTTAACATAGTAAAAAGGAGGCAAATTAAAAAAAAAAAAAAAGGAGGCAAATTGTTTTCAG-------CCTTTCTGTGGATGGCATTCAGTCCTCCAGTGAACG-------------------TGCCAAGTATTTTACAAACAGGAACCTAAGTAAAGGTTAGATAGCCAATCTGTCACACATAGATGATTAGTGATTCTCCTGCTGAGGACCATCGAAA-TATTTTTTTTTCTCTTCTGTGCTTTAGTATGCTTTCTGCTTTGTTGTTAAAATGCTATGGATGGGATCATATGATACAATTCTAGCAGGTGGCTTGGGTTCATGTCCTCAGTCCCAGCCTTCCATAGACCTAATTCTCTTTATAGCCATTCCTTTCTCTTCCTTTTTTGTTTTCCTTTGTTGCTCCAGGGCAATGACCATACCTCCTGTGCAAACAATACCCTTGGTAGGGAGATCATCTATGCCTTTGCAATCAGATCAATCATTTTTAAATTGA--TTTTTGTCTTAACTAAAGTTG-GGTCTTCCATCTGCTTGGTGTTCCCTGCCTTCTTCCTCCTA-TTCTATTCCTTTGCATTTCCAAC-TTGGTACAA-CTGTCTATGATAAACT-TCCTTTTTCTTACAGTTAAAACTCAGTA-----tttttttttctattctaccaaggcaatatatgttctatataagaaaaatcagaaaatataataggcacaaagataatg-------aacacatccataagcctagtcattcacttttaactaatgttaatgtttgggatatgtccttctaCACATTCATGATGAATATT--AAGAAAAAA--TGTCAG-TTGCCCTTTTTTACTGTTTCGGTTGACTCTGAAATCAACCTGTTTACAATGTGAAATAGCAATAAGGTTA--ACGAGCCATACAAG----AATTGTCATCATTGTCCTCAGAGATGACTACC i canFam3.chr19 C 0 I 215 a score=25174.000000 s hg38.chr2_GL582966v2_alt 52676 14 + 96131 AGATCCTTTGCtta--- s panTro4.chr2B 153165414 11 + 247518478 AGATCCtttgc------ i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38371917 11 + 135000294 AGATCCtttgc------ i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82324508 11 - 85365473 AGATCCTTTGC------ i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11935800 11 + 106825570 AGATCttttgt------ i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37639954 11 + 132586672 AGATCttttgt------ i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11297201 11 + 104110932 agatcttttgt------ i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34395462 11 + 128595539 AGATCttttgt------ i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87881930 11 - 158406734 GCATCCtttgt------ i calJac3.chr6 C 0 C 0 s mm10.chr2 49729801 14 + 182113224 CCATCTTTTGT---TTA i mm10.chr2 C 0 I 115 e canFam3.chr19 50639604 215 + 53741614 I a score=805928.000000 s hg38.chr2_GL582966v2_alt 52690 307 + 96131 tttatttatttatttatttatttatttatttatttatttattatttagacgaagtcttgctctgctgcccaggctggagtgcagtggcatcatctcggctcactacaacctctgcctcccaggttcaagctattctcctgcctcagcttcccaagtagctgggattataggtgtgcaccaccacacccagcta--tttttttttt------gtatttttagtagagatggggttttgccatattggccaggctgtttgtgaactcttgacctcaggtaatccacctgcctcggcctctcaaagtgctgagattac s panTro4.chr2B 153165425 306 + 247518478 -ttatttatttatttatttatttatttatttatttatttattatttagacgaagtcttgctctgctgcccaggctggagtgcagtggcatgatctcggctcactacaacctctgcctcccaggttcaagctattctcctgcctcagcttcccaagtagctgggattataggtgtgcaccaccacacccagcta--tttttttttt------gtatttttagtagagatggggttttgccatattggccaggctgtttgtgaactcctgacctcaggtgatccacctgcctcggcctctcaaagtgctgagattac i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38371928 304 + 135000294 ---------ttatttatttatttatttatttatttatttattatttagacgaagtcttgctctgctgcccaggctggagtgcagtggtatgatctcagctcactacaacctctgcttcccaggttcaagctattctcctgcctcagcttcccaagtagctgggattataggtgtacaccaccacacccagcta--tttttttttttttttggtatttttagtagagatggggttttgccatattggccaggctgttcttgaactcctgacctcagctgatccacctgcctcagcctctcaaagtgctgagattac i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82324519 277 - 85365473 -------------------------TTAtttatttatttattatttagacgaagtcttgctctgctgcccaggcttgagtgcagtggcatgatctctgctcactacaacctctgcctcccaggttcaagcaattctcctgcctcagcttcccaagtagctgggattataggtgtgcaccaccacacctagcta--tttttttt--------gtatttttagtagagatggggttttgccatgttggccaggctgt---tgaactcctgacctcaggtgatccacctgcctcggcctctcaaagtgctgagattac i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11935811 286 + 106825570 ---------------------ttgtttgtttacttatttattatttagatgaagtctcactctgttgcccaggctggagtgcagtggcatgacctcggctccctacaacctctgcctcccgggttcaagcgattctcctgcctcagcctcccgaatagctgggattataggtgtgcactaccatacccagcta--tttttttttt------gtatttttagtagagatgggattttgccatgttggccaggctgttctttaactcctgacctcaggtgatccacctgccttggcttctcaaagtgctgagattac i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37639965 288 + 132586672 ---------------------ttgtttgtttatttatttattatttagatgaagtctcactctgttgcccaggctggagtgcagtggcatgatctcggctccctacaacctctgcctcccgggttcaagcgattctcctgcctcagcctcccaaatagctgggattataggtgtgcactaccatacccagctatttttttttttt------gtatttttagtagagatgggattttgccatgttggccaggctgttcttgaactcctgacctcaggtgatccacctgccttggcttctcaaagtgctgagattac i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11297212 284 + 104110932 ---------------------ttgtttgtttatttatttattatttagatgaagtctcactctgttgcccaggctggagtgcagtggcatgatctcggctccctacaacctctgcctcctgggttcaagcgattctcctgcctcagcctcccgaatagctgggattataggtgtgcactaccatacccagcta----tttttttt------gtatttttagtagagatgggattttgccatgttggccaggctgttcttgaactcctgacctcaggtgatccacctgcctcagcttctcaaagtgctgagattac i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34395473 285 + 128595539 ---------------------ttgtttgtttatttatttattatttagatgaagtctcactctgttgcccaggctggagtgcagtggcatgatctcggctccctacaacctctgcctcccgggttcaagcgattctcctgcctcagcctcccgaatagctgggattataggtgtgcactaccatacccagcta---ttttttttt------gtatttttagtagagatgggattttgccatgttgtccaggctgttcttgaactcctgacctcaggtgatccacctgcctcggcttctcaaagtgctgagattac i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87881941 255 - 158406734 ---------------------ttgt---------------ttatttagatgaagtcttgctctgctgcccaggctatagtgcagtggcgtgatctcggctcactacaacctccgcctcccgggttcaagcgattctcctgcctcagcctcccaagtagctgggattataggtg----ccaccacacccagtga-attttttttct------gtatttttagtagggatggggttttgccatgttggcc-------------actcctgacctcaagtgctccacctgcctcggcctctcaaagtgctggaattat i calJac3.chr6 C 0 C 0 e canFam3.chr19 50639604 215 + 53741614 I e mm10.chr2 49729815 115 + 182113224 I a score=253892.000000 s hg38.chr2_GL582966v2_alt 52997 92 + 96131 aggcatgag--------ccactgcgcc-------tggccCC-ATCCTTTG----------CTTAAAATATGGAATAG--------CTATAAAATGCAG-------TGATTTTTTGATGTGTAATTCTTTCTTT s panTro4.chr2B 153165731 92 + 247518478 aggcatgag--------ccactgcgcc-------tggccCC-ATCCTTTG----------CTTAAAATATGGAATAG--------CTATAAAATGCAG-------TGATTTTTTGATGTGTAATTCTTTCTTT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38372232 91 + 135000294 aggcatgag--------ccactgcgcc-------tggccCC-ATCCTTTG----------CTTAAAATATGGAATAA--------TTATAAAATACAG-------TGA-TTTTTGATGTGTAATTCATTCTTT i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82324796 91 - 85365473 aggcatgag--------tcactgcacc-------tggccCC-ATCCTTTG----------CTTAAAATATGGAATAG--------CTATAAAATGCAG-------TGA-TTTTTGATGTGTAATTCATTCTTT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11936097 91 + 106825570 aggcatgag--------ccactgcgcc-------tggccCC-ATCCTTTG----------CTTAAAATATGGAATAG--------CTATAAAATGCAG-------TGA-TTTTTGATGTGTGATTCATTCTTT i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37640253 91 + 132586672 aggcatgag--------ccactgcgcc-------tggccCC-ATCCTTTG----------CTTAAAATATGGAATAG--------CTATAAAATGCAG-------TGA-TTTTTGATGTGTGATTCATTCTTT i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11297496 91 + 104110932 aggcatgag--------ccactgcgcc-------tggcccc-atccTTTG----------CTTAAATTATGGAATAG--------CTATAAAATGCAG-------TGA-TTTTTGATGTGTAATTCATTCTTT i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34395758 91 + 128595539 aggcatgag--------ccactgcgcc-------tggccCC-ATCCTTTG----------CTTAAAATATGGAATAG--------CTATAAAATGCAG-------TGA-TTTTTGATGTGTAATTCATTCTTT i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87882196 81 - 158406734 aggcatgag--------ccactgcatc-------tggccCCAATACTTTG----------TTTAAAGTATGGAATAGCCAACTAACTATAAAATACAG-----------TT----------------TTCTTT i calJac3.chr6 C 0 C 0 s canFam3.chr19 50639819 128 + 53741614 agtcatgagacgctcaaccactgagccactcaggtgccccA-AGCCTATGCAGCTTTAAACTTAAAAAACACAACAA---AAAAACTCTAGAAAGAAAAAGAAACAGA-TTTTTGAAGCCTCATGCtaatttt i canFam3.chr19 I 215 I 54 e mm10.chr2 49729815 115 + 182113224 I a score=189909.000000 s hg38.chr2_GL582966v2_alt 53089 70 + 96131 GAGTTAAGGGTATACAGCTTTAAACT---------AACAACAACAACAACAA------------AACATACAAAACAAAACACA--TGCACAC s panTro4.chr2B 153165823 76 + 247518478 GAGTTAAGGGTATACAGCTTTAAACT---aacaacaacaacaacaacaacaa------------aacatacaaaacaaaacaCA--TGCACAC i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38372323 75 + 135000294 GAGTTAAGGGTATACAGCTTTAAACT---aacaacaacaacaacaacaa-AA------------AACATACAAAACAAAACACA--TGCACAC i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82324887 72 - 85365473 GAGTTAAGGGTATACAGCTTTAaact---aacaacaacaacaacaacaa----------------aaatacaaaacaaaacaca--tgcacac i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11936188 91 + 106825570 GAGTTAAGGGTATACAGCTGTAAACTaacaacaacaacaacaacaaaaacaacaTATGAAAAACAACATACAAAACAAAACACA--TGCGCAC i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37640344 91 + 132586672 GAGTTAAGGGTATACAGCTGTAaactaacaacaacaacaacaacaaaaacaacatatgaaaaacaacatacaaaacaaaacaCA--TGCGCAC i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11297587 88 + 104110932 GAGTTAAGGGTATACAGCTGTaaact---aacaacgacaacaacaaaaacaacatatgaaaaacaacatacaaaacaaaacaca--tgcacac i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34395849 88 + 128595539 GAGTTAAGGGTATACAGCTGTAaact---aacaacaacaacaacaaaaacaacatatgaaaaacaacatacaaaacaaaacaCA--TGCACAC i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87882277 68 - 158406734 GAGTTAAGGCTATACAGCTTTAAACT------------AACAACAAAAA-------------ATAACATATAAAACAAAACACATGTGCACAC i calJac3.chr6 C 0 C 0 e canFam3.chr19 50639947 54 + 53741614 I e mm10.chr2 49729815 115 + 182113224 I a score=76879.000000 s hg38.chr2_GL582966v2_alt 53159 24 + 96131 AAAACAGATTTTTGCAATAAGAAC s panTro4.chr2B 153165899 24 + 247518478 AAAACAGATTTTTGCAATAAGAAC i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38372398 24 + 135000294 AAAACAGATTTTTGCAATAAGAAT i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82324959 24 - 85365473 aaaacaGATTTTTGCAATAAGAAC i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11936279 24 + 106825570 AAAGCAGATTTTTGCAATAAGAGC i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37640435 24 + 132586672 AAAGCAGATTTTTGCAATAAGAGC i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11297675 24 + 104110932 aaagcAGATTTTTGCAATAAGAGC i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34395937 24 + 128595539 AAAGCAGATTTTTGCAATAAGAGC i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87882345 23 - 158406734 AAAACAGA-TTTTGCAATAAGAAC i calJac3.chr6 C 0 C 0 s mm10.chr2 49729930 22 + 182113224 AGAAAAGATTTTTGAAATAACA-- i mm10.chr2 I 115 C 0 e canFam3.chr19 50639947 54 + 53741614 I a score=5718506.000000 s hg38.chr2_GL582966v2_alt 53183 1500 + 96131 ATATCTGTCTTTTTCTTT--TATTTTTTTATCG-------TCTGGA------------------------------------------------------------CCATACAGT--------------GGGGTT---TCCCATCATCCTGA--------------------------------ACTTTTTCAACT------------TGTTTTCTTATATCTGGTTTTTAAATTACTTACTTTTGGATACAGCATAGAACATAAACATTTGAACATTAGATTCACAAGTTCCATGCCATCTCATTTCCCCAGCTTTTAGCTTCCACAAGAAGAGACTATGAGAAGATACAGGAGGAGCTGACACGTCTCCAGATTGAAAATGAGGCAGCCAAGGATGAGGTGAAAGAAGTTCTCCAGGCCCTGGAGGAGCTGGCTGTCAATTATGACCAGAAATCACAGGAAGTGGAGGATAAGACCCGGGCCAATGAGCAGCTGACAGACGAGCTGGCCCAGAAAACGGTTGGAGCATTTGTGTC-TAGGGGGTGGGACTTCCTTGGCTGCCGTTCCTGTACTC-ATATTGATATTCATTGACAGACATGGTATAAGGAGGCAG-TGGCTGAATAGTTATTCAGTGTTAGA-----TGCATTCTCTGAGGTCCCTCCAACAATTGAAATACTTCGTGCAAGTGACTTTTGTTCACTCTTCCTGGAACTGCATATCATGACTGTTTTATATCCAGAGAATTAATAACATTAGTGGGGATGCTTTGTGGGAATagtcaaaagagtgcagactttggagccag-aaaagtcttagttacaagtctgacttcataactc-ttagaccttagctg-----agacagttaagct-ttgtgagtattcattcccttatctgt-aaaaatggtgacgatcatatgctgcttgcatggtgtgaggattagtgacagtttatgtaaagcacttagcacagatctgtgcatatgctacgatatcaatacatACATCTCAAAGCATTGCTACTGGCAAG---AGCAGGGT--CCCATAGAAGGTAT---GGACTTCACTCTTC--TTGCTTATACCCTCCTGAATGA----ATTCCATTCCCTCCCGTCAGCTTTTTGTCCTAGCTGTTACCTTCAGGAGCCTGGAACTAAGCTGCCCTTGTTTGTTTGTTTG-----CTGTTCTAAGCCAGTGCTTCAGCCTGCACATTCCCTTATTTCCAGATTCTCC--AAATGAAAGATGCCATAGGTTCTGC--AGT-------------------------------------GAGCTAGCGGTAG---------CAGGAGCAGTGAATGTTTGGCATGGC-----GGGGTGGGATG---------TGTCCTTTTCTACCTGGAAAATGGGTGGTGGAGAAGCTGACTGGCTCTAACCTGCTATCCTTAGCACCTCTGCCCAATGG-CCTGGTGTCCTGGGCTTGTGCCCAGCCTGCTTTGTGGAAAGCATCCAGTTT-----AAAAAGAAGTAGCAGATGGCGCAGGAGAGTGCTGGTCTGCTGACTGTGAGGCTGACAGGAAATGCTCCTCGCGGCATACATTCAGCTCCAT----GGAGGAAGACTTTTCTAGCAGCTTCCCAAGATGGGGACTACTGCCTCTGAGGATTTTAAAAACAAGATGACATAAGCAGTTGGCAATGCCA-AACAAAAT--------------AAA--ACAAACTCATTCAG s panTro4.chr2B 153165923 1538 + 247518478 ATATCTGTCTTTTTCTTT--TATTTTTTTATCG-------TCTGGA------------------------------------------------------------CCATACAGT--------------GGGGTT---TCCCATCATCCTGA--------------------------------ACTTTTTCAACT------------TGTTTTCTTATATCTGGTTTTTAAATTACTTACTTTTGGATACAGCATAGAACATAAACATTTGAACATTAGATTCTCAAGTTCCATGCCATCTCATTTCCCCAGCTTTTAGCTTCCACAAGAAGAGACTATGAGAAGATACAGGAGGAGCTGACACGTCTCCAGATTGAAAATGAGGCAGCCAAGGATGAGGTGAAAGAAGTTCTCCAGGCCCTGGAGGAGCTGGCTGTCAATTACGACCAGAAATCACAGGAAGTGGAGGATAAGACCCGGGCCAATGAGCAGCTGACAGACGAGCTGGCCCAGAAAACGGTTGGAGCATTTGTGTC-TAGGGGGTGGGACTTCCTTGGCTGCCGTTCCTGTACTC-ATATTGATATTCATTGACAGACATGGTATAAGGAGGCAG-TGGATGAATAGTTATTCAGTGTTAGA-----TGCATTCTCTGAGGTCCCTCCAACAATTGAGATACTTCGTGCAAGTGACTTTTGTTCACTCTTCCTGAAACTGCATATCATGACTGTTTTATATCCAGAGAATTGATAACATTAGTGGGGATGCTTCGTGGGAATagtcaaaagagtgcagactttggagccag-aaaagtcttagttacaagtctgacttcataactc-ttaggccttagctg-----agacagttaagct-ttgtgagtattcattcccttatctgtaaaaaatggtgacgatcatatgctgcttgcatggtgtgaggattagtgacagtttatgtaaagcacttagcacagATCTGTGCTTATGCTACGATATCAATATATACATCTCAAAGCATTGCTACTGGCAAG---AGCAGGGT--CCCGTAGAAGGTAT---GGACTTCACTTTTC--TTGCTTATACCCTCCTGAATGA----ATTCCATTCCCTCCCGTCAGCTTCTTGTCCTAGCTGTTACCTTCAGGAGCCTGGAACTAAGCTGCCCTTGTTTGTTTGTTTG-----CTGTTCTAAGCCAGTGCTTCAGCCTGCACATTCCCTTATTTCCAGATTCTCC--AAATGAAAGATGCCATAGGTTCTGC--GGTAGCAGGTAGCACTGCTACCTATGGCTAGCGGTAGCAGGAGCTAGCGGTAG---------CAGGAGCACTGAATGTTTGGCATGGC-----AGGGTGGGATG---------TGTCCTTTTCTACCTGGAAAATGGGTGGTGAAGAAGCTGACTGGCTCTAACCTGCTATCCTTAGCACCTCTGCCCAATGG-CCTGGTGTCCTGGGCTTGTGCCCAGCCTGCTTTGTGGAAAGCATCCAGTTT-----AAAAAGAAGTAGCAGATGGCGCAGGAGAGTGCTGATCTGCTGACTGTGAGGCTGACAGGAAATGCTCCTCGCGGCATACATTCAGCTCCAT----GGAGGAAGACTTTTCTAGCAGCTTCCCAAGATGGGGACTACTGCCTCTGAGGATTTTAAAAACAAGATGACATAAGCAGTTGGCAATGCCA-AACAAAAT--------------AAA--ACAAACTCATTCAG i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38372422 1500 + 135000294 ATACCTGTCTTTTTCTTT--TATTTTTTTATCG-------TCTGGA------------------------------------------------------------CCATACAGT--------------GGGGTT---TCCCATCATCCTGA--------------------------------ACTTTTCCAACT------------TGTTTTCTTATATCTGGTTTTTAAATTACTTACTTTTGGATACAGCATAGAACATAAACATTTGAACATTAGATTCACAAGTTCCATGCCATCTCATTTCCCCAGCTTTTAGCTTCCACAAGAAGAGACTATGAGAAGATACAGGAGGAGCTGACACGTCTCCAGATTGAAAATGAGGCAGCCAAGGATGAGGTGAAAGAAGTTCTCCAGGCCCTGGAGGAGCTGGCTGTCAATTACGACCAGAAATCACAGGAAGTGGAGGATAAGACCCGGGCCAATGAGCAGCTGACAGACGAGCTGGCCCAGAAAACGGTTGGAGCATTTGTGTC-TAGGGGGTGGGACTTCCTTGGCTGCTGTTCCTGTACTC-ATGTTGATATTCATTGACAGACATGGTATAAGGAGGCAG-TGGCTGAATAGTTATTCAGTGTTAGA-----TGCATTCTCTGAGGTCCCTCCAACAATTGAAATACTTCGTGCAAGTGACTTTTGTTCACTCATCCTGGAACTGCATATCATGACTGTTTTATATCCAGAGAATTGATAACGTTAGTGGGGATGCTTTGTGggaatagtcaaaagagtgcagactttggaggcag-aaaagtcttagttacaagtctgacttcataactc-ttagaccttagctg-----agacagttaagct-ttgtgagtattcattcccttatctgt-aaaaatggtgatgatcacatgctgctttcatggtgtgaggattagtgacagtttatgtaaagcacttagcacagATCTGTACATATGCTACGATATCAATACATACATCTCAAAGCATTGCTACTGGCAAG---AGCAGGGT--CCCATAGAAGGTAT---GGACTTCACTCTTC--TTGCTTATACCCTCCTGAATGA----ATTCCATTCCCTCCCGTCAGCTTCTTGTCCTAGCTGTTACCTTCAGGAGCCTGGAACTAAGCTGCCCTTGTTTGTTTGTTTG-----CTGTTCTAAGCCAGTGCTTCAGCCTGCACATTCCCTTATTTCCAGATTCTCC--GAATGAAAGACGCCATAGGTTCTGC--AGT-------------------------------------GAGCTAGAGGTAG---------CAGGAGCAGTGAATGTTTAGCATGGC-----GGGGTGGGATG---------TGTCCTTTTCTACTTGGAAAATGGGTGGTGGAGAAGCTGACTGGCTCTAACCTGCTATCCTTAGCACCTCTGCCCAATGG-CCTGGTGTCCTGGGCTTGTGCGCAGCCTGCTTTGTGGAAAGCATCCAGTTT-----AAAAAGAAGTAGCAGATGGCGCAGGAGAGTGCTGATCTGCCGACTGTGAGGCTGACAGGAAATGCTCCTCGCGGCATACATTCAGCTCCAT----GGAGGAAGACTTTTCTAGCAGCTTCCCAAGATGGGGACTACTGCCTCTGAGGATTTTAAAAACAAGATGACATAAGCAGTTGGCAATGCCA-AACAAAAT--------------AAA--ACAAACTCATTCAG i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82324983 1509 - 85365473 GTATCTGTCTTTTTGTTT--TATTTTTTTATCG-------TCTGGA------------------------------------------------------------CCATACAGT--------------GGGGTT---TCCCATCATCCTGA--------------------------------ACTTTTCCAACT------------TGTTTTCTTATATCTGGTTTTTAAATTACTTACTTTTGGATACAGCATAGAACATAAACATTTGAACATTAGATTCACAAGCTCCATGCCATCTCATTTCCCCAGCTTTTAGCTTCCACAAGAAGAGACTATGAGAAGATACAGGAGGAGCTGACACGTCTCCAGATTGAAAATGAGGCAGCCAAAGATGAGGTGAAAGAAGTTCTCCAGGCCCTGGAGGAGCTGGCTGTCAATTACGACCAGAAATCACAGGAAGTGGAGGATAAGACCCGGGCCAATGAGCAGCTGACAGACGAGCTGGCCCAGAAAACGGTTGGAGCATTTGTGTC-TAGGGGGTGGGACTTCCTTGGCTGCCGTTCCTGTACTCTATATTGATATTCATTGACAGACATGGTATAAGGAGGCAG-TGGCTGATTAGTTATTCAGTGTTAGA-----TGCATTCCCTGAGGTCCCTCCAACAATTGAAATACTTCATGCAAGTGACTTTTGTTCACTCATCCTGGAACTGCATATCATGACTGTTTTATATCCAGAGAATTGATAACATTAGTGGGGATGCTTTGTGGGAATagtcaaaagagtgc--actttggagccag-aaaagtcttagttacaagtctgacatcataactc-ttagaccttagctgttctaagacagttaagct-ttgtgagtattcattcccttctctgt-aaaaatggtgatgataacatgctgcttgcatggtgtgaggattagtgacagtttatgtaaagcacttagcatagagctgtgcatatgctacgatatcaatacatACATCTCAAAGCGTTGCTACTGGCAAG---AGCGGGGT--CCCATAGAAGGTAT---GGACTTCACTCTTC--TTGCTTATACCCTCCTGAATGA----ATTCCATTCCCTCCCGTCAGCTTCTTGTCCTAGCTGTTACCTTCAGGAGCCTGGAACTAAGCTGCCCTTGTTTGTTTGTTTGCTATTCTGTTTTAAGCCAGTGCTTCAGCCTGCACATTCCCTTATTTCCAGATTCTCC--GAATGAAAGACGCCATAGGTTCTGC--AGG-------------------------------------TAGCTAGCGGTAG---------CAGGAGCAGTGAGTGTTTGGCATGGC-----GGGGTGGGATG---------TGTCCTTTTCTACCTGGAAAACGGGTGGTGGAGAAGCTGACTGGCTCTAACCTGCCATCCTTAGCACCTCTGCCCAAAGG-CCTGGTGTCCTGGGCTTGCGCCCAGCCTGCTTTGTGGAAAGCATCCAGTTG-----AAAAAGAAGTAGCAGATGGCACAGGAGAGTGCTGATCTGCCGACTGTGAGGCTGACAGGAAATGCTCCTCGCGGCATACATTCAGCTCCAC----GGACGAAGACTTTTCTAGCAGCTTCCCAAGATGGGGACTACTGTCTCTGAGGATTTTAAAAACAAGATGACATAAGCAGTTGGCAATGCCA-AACAAAAT--------------AAA--ACAAACTCATTCAG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11936303 1506 + 106825570 ATATCTGCCTTTTTCTTT--TATTTTTTTATCG-------TCTGGA------------------------------------------------------------CCATACAGT--------------GGGGTT---TCCCATCATCCTGA--------------------------------ACTTTTCCAACT------------TGTTTTCTTATATCTGGTTTTTAAATTACTTACTTTTGGATACAGCACAGAACATAAACATTTGAACATTAGATTCACAAGTTCCATGCCATCTCATTTTCCCAGCTTTTAGCTTCCACAAGAAGAGATTATGAGAAGATACAGGAGGAACTGACACGTCTCCAGATTGAAAATGAGGCAGCCAAGGATGAGGTGAAAGAAGTTCTCCAGGCCCTGGAGGAGCTGGCTGTCAATTATGACCAGAAATCACAGGAAGTGGAGGATAAGACCAGGGCCAATGAGCAGCTGACAGATGAGCTGGCCCAGAAAACGGTTGGAGCATTTGTTTC-TAGGGGGTGGGACTTCCTTGGCTGCCATTCCTGTACTC-ATATTGATATTCATTGACAGACATGGTATAAGGAGGCAG-TAGCTGAATAGTTATTCAGTGTTAGA-----TGCATTCCCTGAGGTCCTTCCAACAATTGAAATACTTCATGCAAGTGACTTTTGTTCACTCATCCTGGAACTGCACATCATGACTGTTTTATATCCAGAGAGTTGATAACATTAGTGGGGATGCTTTGTGGGAATAGTCACaagagtgcagactttggagccagaaaaaatcttagttacaagtctgacttcataactc-ttagaccttagctg-----agacagttaagct-tcgtgagtattcattcccttatctgt-aaaaatggtgatgataacatgctgcttgcatggtgtgaggattagtgacagtctatgtaaagcacttagtgcacatctgtgcatatgctacagtatcaatacatACATCTCAAAGCATTGCTGCTGGCAAG---AGTGGGGT--CCCGTGGAAGATAT---GGACTTCACTCTTC--TTGCTTATACCCTCCTGAATGA----ATTCCATTCCCTCCAGTCAGCTTCTTGTCCTGGCTGTTACCTTCAGGAGCCTGGAACTAAGCTGCCCTTGTTTGTTTGTTTGCTGTTCTGTTTTAAGCCAGTGCTTCAGCCTGCACATTCCCTTATTTCCAGATTCTCC--AAATGAAAGACGCCATAGGTTCTGC--AGT-------------------------------------GAGCTAGCGGTAG---------CAGGAGCAGTGAGTGTTTGGCATGGC-----GGGGTGGAATA---------TGTCCTTTTCTACCTGGAAAATGGGTGGTGGAGAAGCTGACTGGCTCTAACCTGCTGTCCTTAGTACCTCTGCCCAGTGG-CCTGGTGTCCTGGGCTTGTGCCCAGCCTGCTTTGTGGAAAGCATCCAGTTT-----AAAAAGAAGTAGCAGATGGCGCAGGAGAATGCTGATCTGCCGACTGTGAGGCTGACAGGAAATGCTCCTCACAGCATACATTCAGCTGCAT----GGAGGAAGACTTTTCTAGCAGCTTCCCAAGATGGGGACTACTGCCTCTGAGGATTTTAAAAACAAGATGACATAAGCAGTTGGCAATACCA-AACAAAAT--------------AAA--ACAAACTCATTCCG i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37640459 1502 + 132586672 ATATCTGCCTTTTTCTTT--TATTTTTTTATCG-------TCTGGA------------------------------------------------------------CCATACAGT--------------GGGGTT---TCCCATCATCCTGA--------------------------------ACTTTTCCAACT------------TGTTTTCTTATATCTGGTTTTTAAATTACTTACTTTTGGATACAGCACAGAACATAAACATTTGAACATTAGATTCACAAGTTCCATGCCATCTCATTTTCCCAGCTTTTAGCTTCCACAAGAAGAGATTATGAGAAGATACAGGAGGAACTGACACGTCTCCAGATTGAAAATGAGGCAGCCAAGGATGAGGTGAAAGAAGTTCTCCAGGCCCTGGAGGAGCTGGCTGTCAATTATGACCAGAAATCACAGGAAGTGGAGGATAAGACCAGGGCCAATGAGCAGCTGACAGATGAGCTGGCCCAGAAAACGGTTGGAGCATTTGTGTC-TAGGGGGTGGGACTTCCTTGGCTGCCATTCCTGTACTC-ATATTGATATTCATTGACAGACATGGTATAAGGAGGCAG-TAGCTGAATAGTTATTCAGTGTTAGA-----TGCATTCC--GAGGTCCCTCCAACAATTGAAATACTTCATGCAAGTGACTTTTGTTCACTCATCCTGGAACTGCACATCATGACTGTTTTATATCCAGAGAGTTGATAACATTAGTGGGGATGCTTTGTGGGAATAGTCACaagagtgcagactttggagccag-aaaaatcttagttacaagtctgacttcataactc-ttag-ccttagctg-----agacagttaagct-tcgtgagtattcattcccttatctgt-aaaaatggtgatgataacatgctgcttgcatggtgtgaggattagtgacagtctatgtaaagcacttagtgcacatctgtgcatatgctacagtatcaatacatACATCTCAAAGCATTGCTACTGGCAAG---AGTGGGGT--CCCGTGGAAGATAT---GGACTTCACTCTTC--TTGCTTATACCCTCCTGAATGA----ATTCCATTCCCTCCAGTCAGCTTCTTGTCCTGGCTGTTACCTTCAGGAGCCTGGAACTAAGCTGCCCttgtttgtttgtttgctgttctgtttTAAGCCAGTGCTTCAGCCTGCACATTCCCTTATTTCCAGATTCTCC--AAATGAAAGACGCCGTAGGTTCTGC--AGT-------------------------------------GAGCTAGCGGTAG---------CAGGAGCAGTGAGTGTTTGGCATGGC-----GGGGTGGAATA---------TGTCCTTTTCTACCTGGAAAATGGGTGGTGGAGAAGCTGACTGGCTCTAACCTGCTGTCCTTAGTACCTCTGCCCAGTGG-CCTGGTGTCCTGGGCTTGTGCCCAGCCTGCTTTGTGGAAAGCATCCAGTTT-----AAAAAGAAGTAGCAGATGGCGCAGGAGAATGCTGATCTGCCGACTGTGAGGCTGACAGGAAATGCTCCTCACGGCATACATTCAGCTGCAT----GGAGGAAGACTTTTCTAGCAGCTTCCCAAGATGGGGACTACTGCCTCTGAGGATTTTAAAAACAAGATGACATAAGCAGTTGGCAATACCA-AACAAAAT--------------AAA--ACAAACTAATTCCG i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11297699 1502 + 104110932 atatctgcctttttcttt--tatttttttatcg-------tCTGGA------------------------------------------------------------CCATACAGT--------------GGGGTT---TCCCATCATCCTGA--------------------------------ACTTTTCCAACT------------TGTTTTCTTATATCTGGCTTTTAAATTACTTACTTTTGGATACAGCATAGAACATAAACATTTGAACATTAGATTCACAAGTTCCATGCCATCTCATTTTCCCAGCTTTTAGCTTCCACAAGAAGAGATTATGAAAAGATACAGGAGGAGCTGACACGTCTCCAGATTGAAAATGAGGCAGCCAAGGATGAGGTGAAAGAAGTTCTCCAGGCCCTGGAGGAGCTGGCTGTCAATTATGACCAGAAATCACAGGAAGTGGAGGATAAGACCCGGGCCAATGAGCAGCTGACAGACGAGCTGGCCCAGAAAACGGTTGGAGCATTTGTGTC-TAGGGGGTGGGACTTCCTTGGCTGCCATTCCTGTACTC-ATATTGATATTCATTGACAGACATGGTATAAGGAGGCAG-TAGCTGAATAGTTATTCAGTGTTAGA-----TGCATTCCCTGAGGTCCCTCCAACAATTGAAATACTTCATGCAAGTGACTTTTGTTCACTCATCCTGGAACTGCA---CGTGACTGTTTTATATCCAGAGAGTCGATAACATTAGTGGGGATGCTTTGTGGGAATAGTCACAAGAGTGCAGACTTTGGAGCCAG-AAAAATCTTAGTTACAAGTCTGACTTCATAACTC-TTAGACCTTAGCTG-----AGACAGTTAAGCT-TCGTGAGTATTCattcccttatctgt-aaaaatggTGATGATAACATGCTGCTTGCATGGTGTGAGGATTAGTGACAGtttatgtaaagcacttagtgcACATCTGTGCATATGCTACAGTATCAATACATACATCTCAAAGCATTGTTACTGGCAAG---AGTGGGGT--CCCATGGGAGATAT---GGACTTCACTCTTC--TTGCTTATACCCTCCTAAATGA----ATTCCATTCCCTCCAGTCAGCTTCCTGTCCTGGCTGTTACCTTCAGGAGCCTGGAACTAAGCTGCCCTTGTTTGTTGGTTTGCTGTTCTGTTTTAAGCCAGTGCTTCAGCCTGCACATTCCCTTATTTCCAGATTCTCC--AAATGAAAGACGCCATAGGTTCTGC--AGT-------------------------------------GAGCTAGCGGTAG---------CAGGAGCAGTGAGTGTTTGGCATGGC-----GGGGTGGAATA---------TGTCCTTTTCTACCTGGAAAATGGGTGGTGGAGAAGCTGACTGGCTCTAACCTGCTGTCCTTAGTACCTCTGCCCAGTGG-CCTGGTGTCCTGAGCttgtgcccagcctgctttgtGGAAAGCATCCAGTTT-----AAAAAGAAGTAGCAGATGGCGCAGGAGAATGCTGATCTGCCGACTGTGAGGCTGACAGGAAATGCTCCTCACGGCGTACATTCAGCTGCAT----GGAGGAAGACTTTTCTAGCAGCTTCCCAAGATGGGGACTACTGCCTCTgaggattttaaaaacaagatgacATAAGCAGTTGGCaatacca-aacaaaat--------------aaa--acaaactcatTCCG i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34395961 1505 + 128595539 ATATCTGCCTTTTTCTTT--TATTTTTTTATCG-------TCTGGA------------------------------------------------------------CCATACAGT--------------GGGGTT---TCCCATCATCCTGA--------------------------------ACTTTTCCAACT------------TGTTTTCTTATATCTGGCTTTTAAATTACTTACTTTTGGATACAGCATAGAACATAAACATTTGAACATTAGATTCACAAGTTCCATGCCATCTCATTTTCCCAGCTTTTAGCTTCCACAAGAAGAGATTATGAGAAGATACAGGAGGAGCTGACACGTCTCCAGATTGAAAATGAGGCAGCCAAGGATGAGGTGAAAGAAGTTCTCCAGGCCCTGGAGGAGCTGGCTGTCAATTATGACCAGAAATCACAGGAAGTGGAGGATAAGACCCGGGCCAATGAGCAGCTGACAGACGAGCTGGCCCAGAAAACGGTTGGAGCATTTGTGTC-TAGGGGGTGGGACTTCCTTGGCTGCCATTCCTGTACTC-ATATTGATATTCATTGACAGACATGGTATAAGGAGGCAG-TAGCTGAATAGTTATTCAGTGTTAGA-----TGCATTCCCTGAGGTCCCTCCAACAATTGAAATACTTCATGCAAGTGACTTTTGTTCACTCATCCTGGAACTGCACATCATGACTGTTTTATATCCAGAGAGTTGATAACATTAGTGGGGATGCTTTGTGGAAATAGTCACaagagtgcagactttggagccag-aaaaatcttagttacaagtctgacttcataactc-ttagaccttagctg-----agacagttaagct-tcgtgagtattcattcccttatctgt-aaaaatggtgatgataacatgctgcttgcatggtgtgaggattagtgacagtttatgtaaagcacttagtgcacatctgtgcatatgctacagtatcaatacatACATCTCAAAGCATTGCTACTGGCAAG---AGTGGGGT--CCCGTGGAAGATAT---GGACTTCACTCTTC--TTGCTTATACCCTCCTGAATGA----ATTCCATTCCCTCCAGTCAGCTTCTTGTCCTGGCTGTTACCTTCAGGAGCCTGGAACTAAGCTGCCCTTGTTTGTTTATTTGCTGTTCTGTTTTAAGCCAGTGCTTCAGCCTGCACATTCCCTTATTTCCAGATTCTCC--AAATGAAAGACGCTGTAGGTTCTGC--AGT-------------------------------------GAGCTAGCGGTAG---------CAGGAGCAGTGAGTGTTTGGCATGGC-----GGGGTGGGATA---------TGTCCTTTTCTACCTGGAAAATGGGTGGTGGAGAAGCTGACTGGCTCTAACCTGCTGTCCTTAGTACCTCTGCCCAGTGG-CCTGGTGTCCTGGGCTTGTGCCCAGCCTGCTTTGTGGAAAGCATCCAGTTT-----AAAAAGAAGTAGCAGATGGCGCAGGAGAATGCTGATCTGCCGACTGTGAGGCTGACAGGAAATGCTCCTCACGGCATACATTCAGCTGCAT----GGAGGAAGACTTTTCTAGCAGCTTCCCAAGATGGGGACTACTGCCTCTGAGGATTTTAAAAACAAGATGGCATAAGCAGTTGGCAATACCA-AACAAAAT--------------AAA--ACAAACTCATTCCG i chlSab2.chr10 C 0 I 156 s calJac3.chr6 87882368 1494 - 158406734 ATATCTGTCttttaattt-atttatttttaaaG-------TCTGGA------------------------------------------------------------CCATACTGT--------------GAGATT---TTCCATCATCCTGA--------------------------------AGTTTTCCAACT------------TTTTTTCTTGTATCTTGTTTTTAAATTACTTAATTTTGGATACAGCATAGAATGTAAACATTTGAACACTAGTTTCACAAGTTCCATGCCATCCTATTTCCCTAGCTTTTAGCTTCCACAAGAAGAGACTATGAGAAGATACAAGAGGAGCTGACACGTCTCCAGATTGAAAACGAGGCAGCCAAGGATGAGGTGAAAGAAGTTCTCCAGGCCCTGGAGGAGCTGGCTGTCAATTACGACCAGAAATCACAGGAAGTGGAGGATAAGACCCGGGCCAATGAGCAGCTGACAGACGAGCTGGCCCAGAAAACGGTTGGAGCATTTGTGTC-TAGGGGGTGGGACTTCCTTGGCTGCCATTCCTGTACTC-ATATTGCTATTCATTGACAGACGTGGTATAAGGAGGTGG-TGGCTGAATAGTTATTCAGTGTTAGA-----TGTATTCTCTGAGATCCCACCAACAATTGAAATACTTCATGCAAGTGACTTTTGTCCACTCATCTTG-AACTGCATATCACGACTGCTTTATATCCAGAGAATTTATAACATTAGTGGGGATGCTCTGTGGGAATagtgaaaagagtgcagactttggagccag-aaaa-tcttagttacaagtctgacttcataactc-ttagaccttagctg-----cgacagtaaagct-ttgtgagtattcattcccttatctgt-aaaaatggcaatgataacatgctgcttgcatggtgtgaagattagtgacagtttatgtaaaacactcagcacagATCTGTGCATGTGCTACAATATCAATACATACATCTCCAAGCATTGCTACTGGCAAG--AAATGGGGT--CCCACAGAAGGTAT---GGACTTCACTCTTC--TTGCTTATACCCTCCTGAATGA----ATTCCATTCCTTTCTGTGGGCTTCCTGTCCTGGCTGTTATTTTCAGGAGCCTGGAATTAAGCTGCCCTTGTTTGTTTGTTTGCTATTCTGTTTTAAGCCAGTGTTTCAGCCTGCACATTCCCTTATTTCCAGATTCTTC--TAATGAAAGATGCCGTAGGTTCTAC--AGT-------------------------------------GAGCTAGCAGTAG---------CAGGGCCAGTGAGTGTTTGGCATGAT-----GGGATGGGATG---------TGTCCTTTTCTACCTGGAAAATGAGTGGTAGAGAAGCTGAGTGACTCTAACCTGCTTTCCTTAGCACTTCTGTGCAATGG-CCTGGTGTCCTGGGCTTGTGCCCAGCCTGCTTTGTGGAAAGCATCCAGTTT-----AAAAAGAAGTGGCAGATGGCACAGGAGAGTGCTGATCTGCCGACTGTGAGGCTGACAGGAAGTTCTCCTCACGGCATGCA---------------GGAAGAAGACTTTTCTAGCAGCTTCCTAAGATGGGGACTACTGCCTCTGTGGGTTTTAAAAACAAGATGACATAAGCAGTTGGCAATGCCA-AACAAAAT--------------AAA--ACAAACTCATTCAG i calJac3.chr6 C 0 C 0 s mm10.chr2 49729952 1387 + 182113224 --------------CTTGAAAATGTGTTTAGCA-------TCTGTA------------------------------------------------------------ACACACGGT--------------GAGAGT---TCTCCACAATCTGA--------------------------------CTGCTCCCAACT------------TGTTCTCCCGGATCTGGTTTTAAAATTGCTTTGTGCAGGG-AGAGCGCAGGTCGTTGACATATAATTAGTGCACTCA------CCTGGCCTTCTCCTTGCCCCAGCTCCTGGCTTCCACGAGAAGGGACTATGAGAAGATCCAGGAGGAGCTGACACGCCTCCAGATCGAAAATGAGGCAGCTAAAGACGAAGTGAAAGAAGTCCTCCAGGCCCTGGAGGAGCTGGCTGTCAATTACGACCAGAAGTCACAAGAAGTGGAGGACAAGACCAGGGCCAACGAGCAACTGACTGATGAGCTGGCCCAGAAAACGGTTGGAGCAATGGTGTTAAAGGGGGCGGGGCTTCTCTG--------------------------------TTAACAA-------ATGGGAAGGCAGTTGGCTGAGTGCTTA-TCTGTGTAAGACTTGGTGTGCTCCCTGAGGCCTCTCCTCCA----------------------------GTCCCTTCACCACAG-ACTACCCAGCACAGCTGCTTTACACCCAGGAAGCTGATGACATCAGCAAGAATGCTTTCtggaaagggttaaa----tgcagatgctagatccag-gaaaagcttagtgagaagtttgactttatggctcttttggcctcaggcg-----agatttttaaaccgtcctgagtattcattgctttatttct-caaaa--acgacaataatgtgcttctt-catggcacctgtgttagtgacactttacgtaaagcacttagcaaggacctCTGTGTGTG-------GTCACTGAATAGCACCGAAAGCGTTGTTACTA--AAG---AGCAGAG------GCAGGGGATGCCCAGGAGTTCAGCAGTCCACAGTTTACATCCTGCTGAATGACAGTGTTCCCCGACTTCC---CACCCTCTTGTCCTAG---------TCGGAAGGACAGAGGTAAGCTGGCCCTGTTCACTGGCTTC------------------------CAGCCGAGGGATCGCTGTATTTCTGGTTCCTCCCTGAGAGACAGCTGTTGTGGGTTTTACTTGGT-------------------------------------GGGCTAGTGACAGGTAGTCTGCTGTGGCCGGTGAGCATTTGGTGATGT-----GGCGGATGCCA---------TGCCCTTTGCTGCCTGG-AGATGGCTCACAGAGAAATTGAGTTGCTGTAGCCTGGTGTCCTTGGTGGCTCTGCCTGAAGGACCTGGTGTCCTGGAC-TGTGC-CATACTACCTTAATAGAAACATCAGTCCC-----GGGCACTCAGAGCAGGGTGGGGAGGAAAGCACTGG-CTGCTGGCAGTGGAGCGGACAGGAAGTACTATTTACTCCCCACATCCTACTGCATCGGGGAAGAAAGGCCTTCCTAATGGTTTCCATGGGACAGGGCTGCTATGTCTGTGGTATT---AAATAAGGTGAAACAAATAGTTGGCAGTGCT-------GAT--------------GGACTGTAAGTCCCTGCAG i mm10.chr2 C 0 C 0 s canFam3.chr19 50640001 1618 + 53741614 ATATCTGTTTTTTTCTGT--TTTCTGTTTTTGGGTTtttttctagagagagagagtgggtgagcagggggaagggcaaagggatacagacaatcttaagaggctccacacccagtgcagagcctgactcggggctcagtctcatgaccctgagatcatgacctgagctgaaatttagaagcaacgcttaactgactgagccacccaggggcccTTCTCTATCTGTTTTTAAAATTACTTTATATTGAACAGTGCACAGCACAGAAACGCTTGAACATTATGTTTATCAGTTCCATGCCATCTCATTTCCTCAGCTTTTGGCTTCCACAAGAAGAGACTATGAGAAGATCCAGGAAGAGCTGACACGTCTCCAGATTGAGAATGAGGCAGCCAAAGATGAAGTGAAGGAAGTTCTCCAAGCCCTGGAAGAGCTGGCTGTCAATTACGACCAGAAGTCACAGGAAGTGGAGGACAAGACCAGAGCCAATGAGCAGCTGACAGATGAGCTGGCCCAGAAAACGGTTGGAATATTTGTGTC-TAGGGGCTGGGACTT-TTTGGTTGCTGTTCCTGTACGT-ATGTTGATGTCTGTTGACAGACACTGTATAGGAAGGCAGTTGGCAGAATGGTTTTTCAGCGTTAGA-----GGCATTCTCTGAAGTCTC-CCAATAATTGCAATACTTCACATAGGTGATTTTTGTGTGCTTATTCCATAACTGCATAT------TGTTTTATATCCAGGGGCCT-ATAACGTTAGCAGGGATGCCTTGC--AAgtggtcgagagagtgcagactttggagccac-aaaaatcctagttaacattttgactttacaacta-ttagcccttaattg-----agacatttaaact-ctgtgaatatttattcccttatctgt-aaaaatggcattaa--gcatgctcctttcagtacatgagaactagagacaattgacagaaagcacttagtgaaggcctgtgtatatgctagaatgccaggaaatatatctcaaa-tattA-TATTAACAAGTGAGACTGGGTGGTTGATAGAAGCTAT---GGATTTCAC--GTC--TTGTTTACACCCTCCTGGGTAA----A-CCCATCCCATCCCCACAACTTCTTGTCCT----------------AGCCTAGGACTCA--TGGACTTG---GTTTATTTGTTGTCCTGTTGTAAGCTGGTGCTTCAGTCTGCACATTTCCTGATTCTCACATTCTGC--CGGTGAAAGAAGCTGCAGGTTCTGCACAGT-------------------------------------GAGCTAGTGGCAG---------CAGGGCCAGTGAGCATTTTGGGAGGTGGCTGGGGGTGGGATGTTTCCATTTTGTCCCTTTCTACTTGGAAAATGGGTGGTGG-GGAGCCGAGTGGCTGTAACCAGCTGCCCTTGGCACCTTGACCCAATGG-CCTGGTATCATGGGATTGTGCCCAGCCTGCTTTGTGGAAAACATCCAGTCCTCCCAGGCAAGGAGTAGCAGATGGTGCAGGAAAGCTCTAATCTGCTGACCGTAGAGCTGATGGAAAATGCTCCTAACTCTGTATATTCAACTGCAT---------------TTTTAAATGGCTCCACAAGATGGGATCTACTGCTTCTGTGGGTTTAAAAAACAAAACGAAATAAGCAG-TGGCAATGCCATAACAAAACTAAAAAGAAGCAGGAAA--ACAAACCAG----- i canFam3.chr19 I 54 C 0 a score=637668.000000 s hg38.chr2_GL582966v2_alt 54683 182 + 96131 AAGTCACTTAGG--AAAGGGGGCGACTTAGA-TTTTCTCTGCTTAGTGTTTTCTATGAGATTCTTTTAATTAGTCCTTCATGTTACTTGCTTCTTAAAACAATGAAACATTTTTCATAATACAGTTTTTAATTTGCCATGAAACCAAAGTATTACTAGATTGGTTTAGAAGACTATT---ATTAGACA s panTro4.chr2B 153167461 181 + 247518478 AAGTCACTTAGG--AAAGGGGGCGACTTAGA-TTTTCTCTGCTTAGTGTTTTCTATGAGATTCTTTTAATTAGTCCTTCATGTTACTTGCTTCTTAAAACAATGAAACATTTTTCATAATACAGTTTTTAATTTGCCATGAAACCAAAGTATTACTAGATTGGTTTAGAAGACTATT---ATTAGAC- i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38373922 181 + 135000294 AAGTCACTTAGG--AAAGGGGGCGACTTAGA-TTTTCTCTGCTTAGTGTTTTCTATGAGATTCTTTTAATTAGTCCTTCATGTTACTTGCTTCTTAAAACAATGAAAGATTTTTCATAATAC-GTTTTTAATTTGCCATGAAACCAAAGTATTACTAGATTGGTTTAGAAGACTATT---ATTAGACA i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82326492 182 - 85365473 AAGTCACTTAGG--AAAGGGGGCGACTTAGA-TTTCCTCTGCTTAGTGTTTTCTATGGGATTCATTTAATTAGTCCTTCATGTTACTTGCTTCTTAAAACAATGAAACATTTTTCATAATACAGTTTTTAATTTGCCATGAAACCAAAGTATTACTAGATTGGTTTAGAAGACTATT---ATTAGACA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11937809 185 + 106825570 AAGTGGCTTAGG--AAAGGGGGCGACTTAGA-TTTCCTCTGCTTAGTGTTTTCTATCGGATTATTTTAATTAGTCCTTCATATTACTTGCTTCTTAAAACAATGAAACATTTTTCATAATACAGTTTTTAATTTGTCATGAAACCAAAGTATTACTAGATTGGTGTAGAAGGCTATTAAAATTATACA i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37641961 185 + 132586672 AAGTGGCTTAGG--AAAGGGGGCGACTTAGA-TTTCCTCTGCTTAGTGTTTTCTATCGGATTATTTTAATTAGTCCTTCATATTACTTGCTTCTTAAAACAATGAAACATTTTTCGTAATACAGTTTTTAATTTGTCATGAAACCAAAGTATTACTAGATTGGTGTAGAAGGCTATTAAAATTATACA i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11299201 185 + 104110932 AAGTCGCTTAGG--AAAGGGGGCGACTTAGA-TTTCCTCTGCTTAGTGTTTTCTATCGGATTATTTTAATTAGTCCTTCATATTACTTGCTTCTtaaaacaatgaaacattttTCATAATACAGTTTTTAATTTGTCATGAAACCAAAGTATTACTAGATTGGTGTAGAAGGCTATTAAAATTAGACA i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34397622 185 + 128595539 AAGTCGCTTAGG--AAAGGGGGCGACTTAGA-TTTCCTCTGCTTAGTGTTTTCTATCGGATTATTTTAATTAGTCCTTCATATTACTTGCTTCTTAAAACAATGAAACATTTTTCATAATACAGTTTTTAATTTGTCATTAAACCAAAGTATTACTAGATTGGTGTAGAAGGCTATTAAAATTAGACA i chlSab2.chr10 I 156 C 0 s calJac3.chr6 87883862 177 - 158406734 ATGTCACTTAGG--AAAGGGGA-GACTTAGA-TTTCCTCTGCTTAGTGTTTTCTATGGGATTCTTTTAATTCATCCTTAATATTATTTCCTTCTTAAAACAATGAAACATTTTTCATAATACAGTTCTT-ACTTGCCATGAAACCAAAGTATTACTAGATTGGTTTAGAAGATGATT---ATTAG--- i calJac3.chr6 C 0 C 0 s mm10.chr2 49731339 173 + 182113224 -ACTCACTGAGA--GAGGACTGCCACT-----CTGCCTCTACTCAGTGTCCCC--CTGGGTTCCTACAGCGTGTCCCTTCTGTGTTGTACATCTGAAAGCAAGGCAAGATTTTCTATAGTACGCTTCTCGTTTTGTGTCAGAAC--AACTATTATCAGACTGCTTTAATATACTATT---TTTAGTAA i mm10.chr2 C 0 I 126 s canFam3.chr19 50641619 183 + 53741614 AAGTCCCTTAGGACAAAGGAGGAGACTTAGATTTTCCTCTGCTGACTGTTTTCTACAGGCTTC-TTTAATTAGTCCTTCATATTATTTGCATCTCAAAACAATGGGACATTTTCCATAATATAGTTCTT-ATTTTCTGCCAAGCCCAAGTATTACTAGACTGTTTTAGGGTACTATT---TTTAGTGA i canFam3.chr19 C 0 C 0 a score=226917.000000 s hg38.chr2_GL582966v2_alt 54865 77 + 96131 GATTGTTTAAAAATGCTC--------TAGCTGCATATGGGAGAATTGTATAAAT--------------------------------------------------------------------------------AGATAACTGTTTTACTGATGTTAAAC-------GTTAG s panTro4.chr2B 153167642 76 + 247518478 -ATTGTTTAAAAATGCTC--------TAGCTGCATATGGGAGAATTGTATAAAT--------------------------------------------------------------------------------AGATAACTGTTTTACTGATGTTAAAC-------GTTAG i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38374103 77 + 135000294 GATTGTTTAAAAATGCTC--------TAGCTGCATATGGGAGAATTGTATAAAT--------------------------------------------------------------------------------AGAGAACTGTTTTACTGATGTTGAAC-------GTTAG i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82326674 77 - 85365473 GATTGTTTAAAAATGCTC--------TAGCTGCATATGGGAGAATTGTATAAAT--------------------------------------------------------------------------------AGATAACTGTTTTACTGATGTTGAAC-------GTTAG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11937994 77 + 106825570 GATTGTTTAAAAATGCTG--------TAGCTGCATATGGGAGAATTTTATAAAT--------------------------------------------------------------------------------AGATAACCGTTTTCCTGATGTTGAAT-------GTTAG i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37642146 77 + 132586672 GATTGTTTAAAAATGCTG--------TAGCTGCATATGGGAGAATTTTATAAAT--------------------------------------------------------------------------------AGATAACCGTTTTCCTGATGTTGAAT-------GTTAG i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11299386 77 + 104110932 GATTGTTTAAAAATGCTG--------TAGCTGCATATGGGAGAATTTTATAAAT--------------------------------------------------------------------------------AGATAACCGTTTTCCTGATGTTGAAC-------ATTAG i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34397807 77 + 128595539 GGTTGTTTAAAAATGCTG--------TAGCTGCATATGGGAGAATTTTATAAAT--------------------------------------------------------------------------------AGATAACTGTTTTCCTGATGTTGAAC-------GTTAG i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87884039 76 - 158406734 -ATTGTTTAAGAATGCCC--------TGGCTACATATGGGAGAATTGTATAAGC--------------------------------------------------------------------------------AGATAACTGTTTTACTGATGGTGAGC-------ATTAG i calJac3.chr6 C 0 C 0 s canFam3.chr19 50641802 172 + 53741614 GACCATTAAAAAGTGCTCTAGTATAATAGCTGCATATGGAAGACTTGCAGAAGCGTCTTTGCATTAACCTCCACAGCTCTGCAATTTAGGGAAATTATTTTCTTTGTTGGTCAAGTTAATATCAAGACACCAAAATATGGCTGTTCTGTTGATGTTGAGTTCATTAAGTTAG i canFam3.chr19 C 0 C 0 e mm10.chr2 49731512 126 + 182113224 I a score=384980.000000 s hg38.chr2_GL582966v2_alt 54942 109 + 96131 TTAA----GAATACATACCTT---TTGGCAAGATACATG-----AGGATGAAAAAGAGATGGGTTTATTAAAGTTTGACAAGAAAATAGAGCTTCTGCTATATAGTAAGAAAC-CAACTATT s panTro4.chr2B 153167718 109 + 247518478 TTAA----GAATACATACCTT---TTGGCAAGATACATG-----AGGATGAAAAAGAGATGGGTTTATTAAAGTTTGACAAGAAAATAGAGCTTCTGCTATATAGTAAGAAAC-CAACTATT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38374180 109 + 135000294 TTAA----GAATACATACCTT---TTGGCAAGATACATG----AAGGATGAAAAAGAGAT-GGTTTATTAAAGTTTGACAAGAAAATAGAGCTTCTGCTATATAGTGAGAAAC-CAACTATT i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82326751 110 - 85365473 TTAA----GAATACATATCTT---TTGGCAAGATACATG----AAGGATGAAAAAGAGATGGGTTTATTAAAGTTTGACAAGAAAATAGAGCTTCTGCTATATAGTATGAAAC-CAACTATT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11938071 110 + 106825570 TTAA----GAATACATACCTT---TTGGCAAGATACATG----AAGGATGAAAAAGAGAAGAGTTTATTAAAGTTTGACAAGAAAATAGAGCTTCTGCTCTATAATGAGAAAC-CAACTATT i rheMac3.chr12 C 0 I 41 s macFas5.chr12 37642223 110 + 132586672 TTAA----GAATACATACCTT---TTGGCAAGATACATG----AAGGATGAAAAAGAGAAGAGTTTATTAAAGTTTGACAAGAAAATAGAGCTTCTGCTATATAATGAGAAAC-CAACTATT i macFas5.chr12 C 0 I 38 s papAnu2.chr12 11299463 110 + 104110932 TTAA----GAATACATACCTT---TTGGCAAGATACATG----AAGGATGAAAAAGAGAAGAGTTTATTAAAGTTTGACAAGAAAATAGAGCTTCTGCTATATAATGAGAAAC-CAACTATT i papAnu2.chr12 C 0 I 38 s chlSab2.chr10 34397884 110 + 128595539 TTAA----GAATACATACCTT---TTGGCAAGATACATG----AAGGATGAAAAAGAGAAGAGTTTATTAAAGTTTGACAAGAAAATAGAGCTTCTGCTATATAATGAGAAAC-CAACTATT i chlSab2.chr10 C 0 I 17 s calJac3.chr6 87884115 110 - 158406734 TTAA----GAATACATACCTT---TTGTCAAGATACAGG----AAGGATGAAAAAGAGATGGGTTTATTAAAGTTTGACAAGAAAATAGAGCTTCTGCTATATAGTAAGAAAC-CAACTATT i calJac3.chr6 C 0 C 0 s mm10.chr2 49731638 117 + 182113224 TGAA----GAAGGCATTGCTTCTCCTGCTAACAATCGGGGTGGGGGGATAGAAAAGAGGTTAATTTGATGAAGTTTGGTGAGAAAATCGAGCTTTTGCTGC-TATGAAGAAGCTCTGCTATG i mm10.chr2 I 126 C 0 s canFam3.chr19 50641974 103 + 53741614 TTAATTCTAAATATCTACCTT---TTGGTAACAGACACG----AGGGATGGAGAAAAGATGGG-TTGTTGATGTTTGGCAGGAAAATGGAGCTC------TATGTTAAGATGA-AGAC---- i canFam3.chr19 C 0 C 0 a score=-3407.000000 s hg38.chr2_GL582966v2_alt 55051 4 + 96131 GAA-C s panTro4.chr2B 153167827 4 + 247518478 GAA-C i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38374289 4 + 135000294 GAA-C i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82326861 4 - 85365473 GAA-C i nomLeu3.chr20 C 0 C 0 s macFas5.chr12 37642371 3 + 132586672 TAA-- i macFas5.chr12 I 38 C 0 s papAnu2.chr12 11299611 3 + 104110932 TAA-- i papAnu2.chr12 I 38 C 0 s chlSab2.chr10 34398011 4 + 128595539 TAAC- i chlSab2.chr10 I 17 I 20 s calJac3.chr6 87884225 4 - 158406734 GAA-C i calJac3.chr6 C 0 C 0 s mm10.chr2 49731755 4 + 182113224 GAA-C i mm10.chr2 C 0 C 0 e canFam3.chr19 50642077 0 + 53741614 C e rheMac3.chr12 11938181 41 + 106825570 I a score=211307.000000 s hg38.chr2_GL582966v2_alt 55055 67 + 96131 GTAACCTAATTTTG-AAAAAAGGTGAAGGGTG--TTTAATTCAGCTTCACTCTGAAAATTGGAAGAC-TTT s panTro4.chr2B 153167831 67 + 247518478 GTAACCTAATTTTG-AAAAAAGGTGAAGGGTG--TTTAATTCAGCTTCACTCTGAAAATTGGAAGAC-TTT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38374293 67 + 135000294 GTAACCTAATTTTG-AAAAAAGATGAAGAGTG--TTTAATTCAACTTCACTCTGAAAATTAGAAGAC-TTT i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82326865 68 - 85365473 GTAACCTAATTTTGAAAAAAAGGTGAAGAGTG--TTTAATTCAGCTTCACTCTGAAAATTAGAAGAC-TTT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11938222 66 + 106825570 GTAACCTAATTTTG-AAAAAAGATGA---GTGTTTTTAATTCAGCTTCACTCTGAAAATTTGAAGAC-TTT i rheMac3.chr12 I 41 C 0 s macFas5.chr12 37642374 66 + 132586672 GTAACCTAATTTTG-AAAAAAGATGA---GTGTTTTTAATTCAGCTTCACTCTGAAAATTTGAAGAC-TTT i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11299614 64 + 104110932 GTAacctaattttg-aaaaaagatga---GTG--TTTAATTCAGCTTCACTCTGAAaatttgaagac-ttt i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34398035 65 + 128595539 GTGACCTAATTTTG-AAAAAAGATGA---GTG--TTTAATTCAGCTTCACTCTGAAAATTTGAAGACTTTT i chlSab2.chr10 I 20 C 0 s calJac3.chr6 87884229 61 - 158406734 TTAACCTAATTTTG-AAAAAAGATGAAGAGTG--TTTAATTCAGCTTCACTCTGAAAATT---AGAC---- i calJac3.chr6 C 0 C 0 s mm10.chr2 49731759 60 + 182113224 -CTGAGTAATTCTG-AAGAATTATA----GTA--TTTAATTTGGCTT--CCCTGAGGACTAGAAGAT-GTT i mm10.chr2 C 0 C 0 s canFam3.chr19 50642077 66 + 53741614 -TCAGCTAATTTTG-AGAAGAGACGAAGAGTG--TTCAATTTGGGTTCACTGGGAAGATTAGAAAAC-TGT i canFam3.chr19 C 0 I 226 a score=867524.000000 s hg38.chr2_GL582966v2_alt 55122 245 + 96131 TTTTTTTGAAGTTGTTTTCTAAACTTATTAATGTTCTTCTGGGCCATCTATTCTAGACCCATCTGTCTTTATCAATTTAGGTGGGAATATGGAGGTGGCCCAGGGAGCAGG-------TTTGTTTAGGAGTGAAGGTGGGGACCCTTGCAGGTAAGTTTAGACCCTGAAATGAAACAGATAGGACTGACATAGAATATCTGGTAAGTAGGAAGATGCAATTACATGTTATAAATTTAAGGACTTCCTTTTTG s panTro4.chr2B 153167898 245 + 247518478 TTTTTTTGAAGTTGTTTTCTAAACTTATTAATGTTCTTCTGGGCCATCTATTCTAGACCCATCTGTCTTTATCAATTTAGGTGGGAATATGGAGGTGGCCCAGGGAGCAGG-------TTTGTTTAGGAGTGAAGGTGGGGACCCTTGCAGGTAAGTTTAGACCCTGAAATGAAACAGATAGGACTGACATAGAATATCTGGTAAGTAGGAAGATGCAATTACATGTTATAAATTTAAGGACTTCTTTTTTG i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38374360 245 + 135000294 TTTTTTTGAAGTTGTTTTCTAAACTTATTAATGTTCCTCTGGGCCATCTATTCTAGACCTATCTGTCTTTATCAATTTAGGTGGGAATATGGAGGTGGCCCAGGGAGCAGG-------TTTGTTTAGGAGTGAAGGTGGGGACCCTTGCAGGTAAGTTTAGACCCTGAAATGAAACAGGTAGGATTGACATAGAATATCTGGTAAGTAGGAAGATGCAATTACATGTTATAAATTTAAGGACTTCTTTTTTG i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82326933 245 - 85365473 TTTTTTTGAAGTCGTTTTCTAAACTTATTAATGTTCCTCTGGGCCATCTATTCTAGACGCATCTGTCTTTATCAATTTAGGTGGGAATATGGAGGTGGCCCAGGGAGCAGG-------TTTGTTTAGGAGTGGAGGTGGGGACCCTTGCAGGTAAGTGTAGACCCTGAAATGAAACAGGTAGGATTGACATAGAATATCTGGTAAGTAGGAAGATGCAATTACATGTGATAAATTTAAGGACTTCTTTTTTG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11938288 245 + 106825570 TTTTTTTGAAGTTGTTTTCTAAACTTATTAAACTACCTCTTGGCCATCTATTCTAGACCCATCTGTCTTTATCAATTTAGGTGGGAATATGGAGGTGGCCCAGGGAGCAGG-------TTTGTTTAGGAGTGGAGGTGGGGACCCTTGCAGGTAAGTTTAGACCCTGAAATGAAACAGATAGGACTAACATAGAATATCTGGTAAGTAGGAAGATGCAATTACATGTTATAAACTTAAGGACTTCTTTTTTG i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37642440 245 + 132586672 TTTTTTTGAAGTTGTTTTCTAAACTTATTAAACTACCTCTTGGCCATCTATTCTAGACCCATCTGTCTTTATCAATTTAGGTGGGAATATGGAGGTGGCCCAGGGAGCAGG-------TTTGTTTAGGAGTGGAGGTGGGGACCCTTGCAGGTAAGTTTAGACCCTGAAATGAAACAGATAGGACTAACATAGAATATCTGGTAAGTAGGAAGATGCAATTACATGTTATAAACTTAAGGACTTCTTTTTTG i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11299678 245 + 104110932 tttttttgaagttgttTTCTAAACTTATTAAACTACCTCTTGGCCATCTATTCTAGACCCATCTGCCTTTATCAATTCAGGTGGGAATATGGAGGTGGCCCAGGGAGCAGG-------TTTGTTTAGGAGTGGAGGTGGGGACCCTTGCAGGTAAGTTTAGACCCTGAAATGAAACAGATAGAACTGACATAGAATATCTGGTAAGTAGGAAGATGCAATTACATGTTATAAACTTAAGGACTTCTTTTTtg i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34398100 245 + 128595539 TTTTTTTGAAGTTGTTTTCTAAACTTATTAAACTACCTCTGGGCCATCTATTCTAGACCCATCTGTCTTTATCAATTTAGGTGGGAATATAGAGGTGGCCCAGGGAGCAGG-------TTTGTTTAGGAGTGGAGGTGGGGACCCTTGCAGGTAAGTTTAGACCCTGAAATGAAACAGATAGGACTGACATAGCATATCTGGTAAGTAGGAAGATGCAATTACATGTTATAAACTTAAGGACTTCTTTTTTG i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87884290 237 - 158406734 -TTTTGTGAA---GTTTTCTAAACTTGTTGATGTTCCTCTAGGCCATCTGTTTTAGATCCACCTGTCTTTGTCAATTTAGGTGGAAATATGGAGGTTG-CCAGGGAGCAGG-------TTTGTTTAGGAGTGGAGGTGGGGACACTTGCAGGTGAGTTTAGACCATGAAATGAAACAGGGAGGTCTGAAATAGAACATCTGGTAAGTAGGAGGATGCAATTAC--GTTATAAACTTAA-GATTTCTTTTTTG i calJac3.chr6 C 0 C 0 s mm10.chr2 49731819 203 + 182113224 CT------AAGTTGTTACCTATCCTCATTAGTGTTTGTCTGGGCTATTGATTCCAGACCC------CATTACTCA-------GGGTATTTGGATGGGACCCAGGGAGGAGATT-----TTTGTTTGAGCATGGAGCTGGG--------------------GAACCTGAAATAGAACAAGGGGGA---AGAAACAACCTTTGGTAAGTTAGAAAATGTAGTTAAATCCTATAAACGTAGGGCCTCTTTTTG-- i mm10.chr2 C 0 I 510 s canFam3.chr19 50642369 237 + 53741614 CTTTTTAGAAGTTGTTTTCTAAACTCATGAATATTTCTCGGGTC------TTCCTGACCCATCTATTAGTATGAAGTCAGATGGGAATTTGGAAGTGGTCCAGGGAGCAGGTCTAAGGTCTATTTGGATGTGGTGGTGGGGATGCTTGCAGGT--GTTTGGACCCTGGAG------AATGAGGACTGAAACAGAACATCTCACGGGGAGGAGCATGGAATCACACATTATCAGCCTAAGGGCTCCTTTTCG- i canFam3.chr19 I 226 C 0 a score=308873.000000 s hg38.chr2_GL582966v2_alt 55367 96 + 96131 GCT---------------TAACTTATTTCCCTGACTTGGAAATTGTCATCTGATATGTAGAC-ATATAATGTATCAGGCCATGTGATACAACTTGTTGATAAAGAGTTCCCC s panTro4.chr2B 153168143 96 + 247518478 GCT---------------TAACTTATTTCCCTGACTTGGAAATTGTCATCTGATATGTAGAC-ATATAATGTATCAGGCCATGTGATATAACTTGTTGATAAAGAGTTCCTC i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38374605 110 + 135000294 GAT-TTACTTATTTCTAGTAACTTATTTCCCTGACTTGGAAATTGTCATCTGATATGTAGAC-ATATAATGTATAACGCCATGTGATATAACTTGTTGATAAAGAGTTCCTC i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82327178 110 - 85365473 GCT-TTACTTATTTCTAGTAACTTATTTCCCTGACTTGGAAATTGTCATCTGATATGTAGAC-ATATAAGGTATCAGGCCATGTGATATAACTTGTTGATAAAGAGTTCCTC i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11938533 110 + 106825570 GCTTTTACTTATTTTTAATAACTTATTTCCCTGACTTGG-AATTGTCATCTGATATATAGAC-ATATAATGTATCAGGCCATGTGATATAACTTGTTGATAAAGAGTTCATC i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37642685 111 + 132586672 GCTTTTACTTATTTTTAATAACTTATTTCCCTGACTTGG-AATTGTCATCTGATATGTAGACAATATAATGTATCAGGCCATGTGATATAACTTGTTGATAAAGAGTTCATC i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11299923 110 + 104110932 gcttttacttatttttaataacttatttCCCTGACTTGG-AATTGTCATCTGATATGTAGAC-ATATAATGTATCAGGCCATGTGATATAACTTGTTGATAAAGAGTTCATC i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34398345 110 + 128595539 GCTTTTACTTATTTTTAATAACTTATTTCCCTGACTTGG-AATTGTCATCTGATATGTAGAC-ATATAATGTATCAGGCCATGTGATATAACTTGTTGATAAAGAGTTCATC i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87884527 108 - 158406734 GCT-TTACTTATTTTTAATAACTTATTTCCCTGACTTGGAAATTGTCATCTGATATGTAGAC-ATATAA--CATCAGGCCATGTGATATAACTTGTGAATATAGAGTTCCTC i calJac3.chr6 C 0 C 0 s canFam3.chr19 50642606 77 + 53741614 -------ACTATTTTAAATGA--GATTTCACTGACTTGCAAATTGTCATGTGATACGTAGAC-A-------TATCAGGCCAAG------------------ACAAATTCTCC i canFam3.chr19 C 0 C 0 e mm10.chr2 49732022 510 + 182113224 I a score=4251982.000000 s hg38.chr2_GL582966v2_alt 55463 1179 + 96131 TTCTTATCCAAGAATGCAGTGCTATGCGAGAGTTTGCCTTAAAAGGATTCTTAGGTTGAAGTCATGTA----------AAAGAAATCCATTCTACATGATGGTGTTATTCTTTGTA------ATGTGGAGTGTATGAAATTGATGGGCAACCCTTTGAATTTGTTGTTGAAATTTGTTTTTCAGACTACATTGACAACCACACAGAGAGAGCTGAGCCAGCTACAAGAGCTTAGCAACCACCAGAAGAAAAGGGCAACTGAGATCCTGAATTTGCTGTTGAAAGATCTGGGGGAGATAGGTGGAATTATTGGCACCAATGATGTGAAAACTGTAAGCCAGCCCTTCTTTTATCCTCTCTACCTGCTCCTGT-------------CAAGTTAGTAGGGTCTGTGCTTTACTCTTTTAAGCATTCAATGCTTAGCACTGTGCTTTGCATCTGCCATGTGCTGGTTAGTGTTtgaatgaatgaaaaaagggctaattgaatgactgagtgaatTGTTTGTTGGGGTGAGGAGGAGGAGA-AAAAAAATTATCTTTCAAATCTAGGCAGTGTCTTCAAATGTTGGTTGGCTTTGTGTAAATTGGTTTATTTCTCAAATTGGTTTATTTCTC-----AACTTATTTCCTAATGTTGCAGAAGTTTGGAATTAAATAGCTTAAGCAACAGTTCTAGTCTCAGAATTGTGTTTTTCCTTTTCTGAAAGAACCCAGTGAAGTGAAAATTCTC---CAAGTCAGTG---------------------TGAAAGTGATAGGATTCtaacagtggcttaagaaataaaaccacatttaattattcacaatatgagaagtcta---aaatcttgccactcagggtgtgatctgcctcacctgggagcttattggaactacagcctttcaggccccacctcagacctattgaatcaaaatctgcactttaacaagattctccaggtgattctttatgcttattaaagtttgagaagcaaattttgttttggtgccatggctcaacaatgtcaagttctcagg---ctttttctctgtttcctttct-cctgtcctcagcttgtttccttttcataatccagaggattatgcctcatggtagcaaaatagctgctgtagtaccaatcatcacatcctcactcaaccacatccaaggcaggatgggctgaaaaggccaacttctttaatccag--gagggaaacatatcccagaagtcccca s panTro4.chr2B 153168239 1178 + 247518478 TTCTTATCCAAGAATGCAGTGCTATGCGAGAGTTTGCCTTAAAAGGATTCTTAGGTTGAAGTCACGTA----------AAAGAAATCCATTCTACATGATGGTGTTATTCTTTGTA------ATGTGGAGTGTATGAAATTGATGGGCAACCCTTTGAATTTGTTGTTGAAATTTGTTTTTCAGACTACATTGACAACCACACAGAGAGAGCTGAGCCAGCTACAAGAGCTTAGCAACCACCAGAAGAAAAGGGCAACTGAGATCCTGAATTTGCTGTTGAAAGATCTGGGGGAGATAGGTGGAATTATTGGCACCAATGATGTGAAAACTGTAAGCCAGCCCTTCTTCTATCCTCTCTACCTGCTCCTGT-------------CAAGTTAGTAGGGTCTGTGCTTTACTCTTTTAAGCATTCAATGCTTAGCACTGTGCTTTGCATCTGCCATGTGCTGGTTAGTGTTTGAATGAATGAAAAAAGGGCTAATTGAATGACTGAGTGAATTGTTTGTTGGGGTGAGGAGGAGGAGA-AAAAAAATTATCTTTCAAATCTAGGCAGTGTCTTCAAATCTTGGTTGGCTTTGTGTAAATTGGTTTATTTCTCAAATTGGTTTATTTCTC-----AACTTATTTCCTAATGTTGCAGAAGTTTGGAATTAAATAGCTTAAGCAACAGTTCTAGTCTCAGAATTGTG-TTTTCCTTTTCTGAAAGAACCCAGTGAAGTGAAAATTCTC---CAAGTCAGTG---------------------TGAAAGTGATAGGATTCtaacagtggcttaagaaataaaaccacatttaattattcacaatatgagaagtcta---aaatcttgccactcagggtgtgatctgcctcacctgggagcttattggaactacagcctttcaggccccacttcagacctattgaatcaaaatctgcactttaacaagattctccaggtgattctttatgcttattaaagtttgagaagcaaattttgttttggtgccatggctcaacaatgtcaagttctcagg---ctttttctctatttcctttct-cctgtcctcagcttgtttccttttcataatccagaggattgtgcctcatggtagcaaaatagctgctgtagtaccaatcatcacatcctcactcaaccacatccaaggcaggatgggctgaaaaggccaacttctttaatccag--gagggaaacatatcccagaagtcccca i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38374715 1165 + 135000294 TTCTTACCCAAGAATGCAGTGCTATGCGAGAGTTTGCCTTAAAAGGATTCTTAGGTTGAAGTCATGTA----------AAAGAAATCCATTCTACATGATGGTGTTATTCTTTGTA------ATGTGGAGTGTATGAAATTGATGGGCAACCCTTTGAATTTGTTGTTGAAATTTGTTTTTCAGACTACATTGACAACCACACAGAGAGAGCTGAGCCAGCTACAAGAGCTTAGCAACCACCAGAAGAAAAGGGCAACTGAGATCCTGAATTTGCTGTTGAAAGATCTGGGGGAGATAGGTGGAATTATTGGCACCAATGATGTGAAAACTGTAAGCCAGCCCTTCTTTTATCCTCTTTACCTGCTCCTGT-------------CAAGTTAGCAGGGTCTGTGCTTTACTCTTTTAAGCATTTAATGCTTAGCACTGTGCTTTGCATCTGTCATGTGCTGGTTTGTGTTTGAATGAATGAAAAAAGGGCTAATTGAATGACTAAGTGAATTGTTTGTTGGGATGAGGAGGAGGAGA-AGAAAAATTATCTTTCAAATCTAGGCAGTGTCTTCAAATCTTGGTTGGCTTTGTGT-----------------AAATTGGTTTATTTCTC-----AACTTATTTCGTAATGTTGCAGAAGTTTGGAATTAAATAGCTTAAGCAACAGTTTTAGTCTCAGAATTGTGTTTTTCCTTTTCTGAAAGAACCCAGTGGAGTGAAAATTCTCCAACAAGTCAGTG---------------------TGAAAGTGATAGGATTCTAACTGtggcttaagaaataaaaccacatttaattattcacaatatgagaagtcta---aaatcttgccactcagggtgtgatctgcctcacctgggagctttttggaactacagcctttcaggccccacctcagacatattgaatcaaaatctgcactttaacaagattctccaggtgattctttatgcttattaaagtttgagaagcaaattttggtttggtgccatggctcaacaatgtcaggttctcagg---ctttttctctatttcctttct-cctgtcctcagcctgtttccttttcataatccagaggattgtgcctcatggtagcaaaatagctgctgtagtaccaatcatcacatcctcactcaaccacatccaaggcaggatgtgccgaaaaggtcaacttctttaatccag--gagggaaacatatcccagaagtcccca i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82327288 1182 - 85365473 TTCTTATCCAAGAATGCAGTGCTATGCGAGAGTTTGCCTTAAAAGGATTCTTAGGTTGAAGTCATGTA----------AAAGAAATCCATTCTACATGATGGTGTTATTCTTTGTA------ATGTGGAGTGTATGAAATTGATAGGCAACCATTTGAATTTGTTGTTGAAATTTGTTTTTCAGACTACATTGACAACCACACAGAGAGAGCTGAGCCAGCTACAAGAGCTTAGCAACCACCAGAAGAAAAGGGCAACTGAGATCCTGAATTTGCTGTTGAAAGATCTGGGGGAGATAGGTGGAATTATTGGCACCAATGATGTGAAAACTGTAAGCCAGCCCTTCTTTTATCCTCTCTACCTGCCCCTGT-------------CAAGTTAGTAGGGTCTGTGCTTTACTCTTTTAGGCATTCAATGCTTAGCAATGTGCTTTGCATCTGCCATGTGCTGGTTAGTGTTtgaatgaatgaaagaagggctaattgaatgactgagtgaatTGTTTGTTGGGGTGAGGAGGAGGAGA-AAAAAAATTATCTTTCCAATCTAGGCAGTGTTTTCAAATCTTGGTTGGTTTTGTGTAAATTGGTTTGTTTCTCAAATTGGTTTATTTCTC-----AACTTATTTCCTAATGTTGCGGAAGTTTGGAATTAAATAGCTTAAGCAACAGTTCTAGTCTCAGAATTGTGTTTTTCCTTTTCTGAAAGAACCCAGTGGAGTGAAAATTCTCCAGCAAGTCAGTG---------------------TGAAAGTGATAGGATTCTAACAGtggcttaagaaataaaaccacatttaattattcacactatgagaagtcta---aaatcttgccactcagggtgtgatctgcctcacctgggagcttattgggactacagcctttcaggccccacctcagacctattgaatcaaaatctgcactttaacatgattctccaggtgattctttatgcttattaaagtttgagaagcaaattttggtttggtgccatggctcaacaatgtcaagttctcagg---ctttttctctatttcctttct-cctgtcctcagcttgtttccctttcataatccagaggattgtgcctcatggtagcaaaatagctgctgtagtaccaatcatcacatcctcactcaaccacatccaaggcaggatgggctgaaaaggccaacttctttaatccag--gagggaaacatatcccagaagtcccca i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11938643 1145 + 106825570 TTCTTATCCAAGAATGCAGTGCTATGCGAGAGTTTGCCTTAAAAGAATTCTTAGGTTGAAGTCATGTA-AGTCATGTCAAAGAACTCCATTCTACATGATGGTGTTA---TGTGTA------ATGTGGAGTGTATGAAATTGATGGGCAACTCTTTGAATCTGTTGTTGAAATTTGTTTTTCAGACTACATTAACAACCACGCAGAGAGAGCTGAGCCAGCTACAAGAGCTTAGCAACCACCAGAAGAAAAGGGCAACTGAGATTCTGAATTTGCTGTTGAAAGATCTGGGGGAGATTGGTGGAATTATTGGCACCAATGATGTGAAAACTGTAAGCCAGCCCTTCGTTTATCTTCTCTACCTGCTCCTAT-------------CAAGTTAGCAGGGTCTGTGCTTGACTCTTTTAAGCATTCAATGCTTAGCACTGTGCTTCGCATCTGCCATGTGCTGGTTAATGTTTGAATGAATGAAAAAAGGGCTAATTGAATGACTGAGTGAATTGTTTGTTGGGGTGAGGAGGAGGAGA-AAAAAAATGATCTTTCAGGTCTAGGCAATGTCTTCAAATCTTGGTTGGCTTTGTGT-----------------AAATTGGTTTATTTCTC----AAACTTATTTCCTAATGTTGCAGAAGTTTGGAATTAAATCGCTTAAGCAACAGTTCTAGTCTCAGAATTGTGTTTTTCCTTTTCTAAAAGAACCCAGTGGAGTGAAAATTCTCCAACAAGTCGACG---------------------TGAAAGTATTAGGATTCTAACAGtggcttaagcaataaaatcatatttaattattcacaatatgagaagtcta---aaatcttgctactcagggtgtgatcttccttgcctaggagcttattggaactacagcctctcaggccccac-tcagacctattgaatcaaaatctgcactttaacaagattctccaggtgattctttatgcttattaaagtttgagaaccaaattttggtttggtgccatggctcaacgatgtcaaattctcagg---ctttttctctatttcctttct-cctgtcctcagcctgtttccttttcataatccagatgattgtgcctcatggtagcaaaatagctgctgtagtaccgatcatcacatcctcactcaaccacatccaaggc--------------------------TTAATCCAG--GAGggaaatgtatcccagaagtcccca i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37642796 1145 + 132586672 TTCTTATCCAAGAATGCAGTGCTATGCGAGAGTTTGCCTTAAAAGAATTCTTAGGTTGAAGTCATGTA-AGTCATGTCAAAGAACTCCATTCTACATGATGGTGTTA---TGTGTA------ATGTGGAGTGTATGAAATTGATGGGCAACTCTTTGAATCTGTTGTTGAAATTTGTTTTTCAGACTACATTAACAACCACGCAGAGAGAGCTGAGCCAGCTACAAGAGCTTAGCAACCACCAGAAGAAAAGGGCAACTGAGATTCTGAATTTGCTGTTGAAAGATCTGGGGGAGATTGGTGGAATTATTGGCACCAATGATGTGAAAACTGTAAGCCAGCCCTTCTTTTATCTTCTCTACCTGCTCCTAT-------------CAAGTTAGCAGGGTCTGTGCTTGACTCTTTTAAGCATTCAATGCTTAGCACTGTGCTTCGCATCTGCCATGTGCTGGTTaatgtttgaatgaatgaaaaaagggctaattgaatgactgagtgaatTGTTTGTTGGGGTGAGGAGGAGGAGA-AAAAAAATGATCTTTCAGGTCTAGGCAATGTCTTCAAATCTTGGTTGGCTTTGTGT-----------------AAATTGGTTTATTTCTC----AAACTTATTTCCTAATGTTGCAGAAGTTTGGAATTAAATCGCTTAAGCAACAGTTCTAGTCTCAGAATTGTGTTTTTCCTTTTCTAAAAGAACCCAGTGGAGTGAAAATTCTCCAACAAGTCGACG---------------------TGAAAGTATTAGGATTCTAACAGtggcttaagcaataaaatcatatttaattattcacaatatgagaagtcta---aaatcttgctactcagggtgtgatcttcctcacctaggagcttattggaactacagcctctcaggccccac-tcagacctattgaatcaaaatctgcactttaacaagattctccaggtgattctttatgcttattaaagtttgagaaccaaattttggtttggtgccatggctcaacgatgtcaaattctcagg---ctttttctctatttcctttct-cctgtcctcagcctgtttccttttcataatccagatgattgtgcctcatggtagcaaaatagctgctgtagtaccaatcatcacatcctcactcaaccacatccaaggc--------------------------ttaatccag--gagggaaatgtatcccagaagtcccca i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11300033 1144 + 104110932 TTCTTATCCAAGAATGCAGTGCTATGCGAGAGTTTGCCTTAAAAGAATTCTTAGGTTGAAGTCATGTA-AGTCATGTCAAAGAAATCCATTCTACATGATGGTGTTA---TGTGTA------ATGTGGAGTGTATGAAATTGATGGGCAACTCTTTGAATCTGTtgttgaaatttgtttttcagactACATTAACAACCACGCAGAGAGAGCTGAGCCAGCTACAAGAGCTTAGCAACCACCAGAAGAAAAGGGCAACTGAGATTCTGAATTTGCTGTTGAAAGATCTGGGGGAGATTGGTGGAATTATTGGCACCAATGATGTGAAAACTGTAAGCCAGcccttcttttgtcttctctacCTGCTCCTAT-------------CAAGTTAGCAGGGTCTGTGCTTTACTCTTTTAAGCATTCAACGCTTAGCACTGTGCTTCGCATCTGCCATGTGCTGGTTAacgtttgaatgaatgaaaaaagggCTAATTGAATGACTGAGTGAATTGTTTGttggggtgaggaggaggag--aaaaaaatgatcttTCAGGTCTAGGCAATGTCTTCAAATCTTGGTTGGCTTTGTGT-----------------AAATTGGTTTATTTCTC----AAACTTATTTCCTAATGTTGCAGAAGTTTGGAATTAAATCGCTTACACAACAGTTCTAGTCTCAgaattgtgtttttccttttctaaaagaaCCCAGTGGAGTGAAAATTCTCCAACAAGTTGACG---------------------TGAAAGTATTAGGATTCTAACAGTGGCTTAAgcaataaaatcatatttaattattCACAATATGAGAAGTCTA---AAATCTTGCTACTCAGGGTGTGATCTTCCTCACCTAGGAGCTTATTGGAACTACAGCCTCTCAGGCCCCAC-TCAGACCTATTGAATCAAAATCTGCACTTTAACAAgattctccaggtgattctttatgcttattaaagtttgagaaccaaaTTTTGGTTTGGTGCCATGGCTCAACAATGTCAAATTCTCAgg---ctttttctctatttcctttct-cCTGTCCTCAGCCTGTTTCCTTTTCATAATCCAGATGATTGTGCCTCATGGTAGCAAAATAGCTGCTGTAGTACCGATCATCACATCCTCACTCAACCACATCCAAGGC--------------------------TTAATCCAG--GAGGGAAATGTATCCCAGAAGTCCCCA i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34398455 1144 + 128595539 TTCTTATCCAAGAATGCAGTGCTATGCGAGAGTTTGCCTTAAAAGAATTCTTAGGTTGAAGTCATGTA-AGTCATGTAAAAGAAATCCATTCTACATGATGGTGTTA---TGTGTA------ATGTGGAGTGTATGAAATTGATGGGCAACTCTTTGAATTTGTTGTTGAAATTTGTTTTTCAGACTACATTAACAACCACACAGAGAGAGCTGAGCCAGCTACAAGAGCTTAGCAACCACCAGAAGAAAAGGGCAACTGAGATCCTGAATTTGCTGTTGAAAGATCTGGGGGAGATTGGTGGAATTATTGGCACCAATGATGTGAAAACTGTAAGCCAGCCCTTCTTTTATCTTCTCTACCTGCTCCTAT-------------CAAGTTAGCAGGGTCTGTGCTTTACTCTTTTAAGCATTCAATGCTTAGCACTATGCTTCGCGTCTGCCATGTGCTGGTTaatgtttgaatgaatgaaaaaagggcaaattgaatgactgagtgaatTGTTTGTTGGGGTGAGGAGGAGGAG--AAAAAAATGATCTTTCAGGTCTAGGCAGTGTCTTCAAATCTTGGTTGGCTTTGTGT-----------------AAATTGGTTTATTTCTC----AAACTTATTTCCTAATGTTGCAGAAGTTTGGAATTAAATCGCTTAAGCAACAGTTCTAGTCTCAGAATTGTGTTTTTCCTTTTCTAAAAGAACCCAGTGGAGTGAAAATTCTCCAACAAGTCGATG---------------------TGAAAGTATTAGGATTCTAACAGtggcttaagcaataaaatcatatttaattattcacaatatgagaagtcta---aaatcttgctactcagggtgtgatcttcctcacctaggagcttattggaactacagcctctcaggccccac-tcagacctattgaatcaaaatctgcactttaacaagattctccaggtgattctttatgcttattaaagtttgagaaccaaattttggtttggtgccatggctcaacaatgtcaaattctcagg---ctttttctctatttcctttct-cctgtcctcagcctgtttccttttcataatccagaggattgtgcctcatggtagcaaaatagctgctgtagtaccgatcatcacatcctcactcagccacatccaaggc--------------------------ttaatccag--gaaggaaatgtatcccagaagtcccca i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87884635 1114 - 158406734 TTCTTATCTAAGAATGCAGGGCTATGCAACCATTTGCCTTAAAATGATTCTTAGGTTGAAGTCATGTA----------AAAGAAATCCATTCTACATGATGGTGTTATTCTTTGTA------ATGTGGAGTGTATGAAATTGATGGACAACTCTTTGAATTTGTTGTTGAAATTTGTTTTTCAGACTACATTGACAACCACGCAGAGAGAGCTGAGCCAGCTACAAGAGCTTAGCAACCACCAGAAGAAAAGGGCAACTGAGATCCTGAATTTGCTGTTGAAAGATTTGGGGGAGATAGGTGGAATTATTGGCACCAATGATGTGAAAACCGTAAGCCAGCCCT---TTTATCCTCTCTGCCTGTTCTTAT-------------CAAGTTAGCGGGGTCTATGCTTTATTCTTTTAAGCA-TCAATACTTAGCACTGTGCTTTGCATCTGCCATATGCTTGGTAGTGTTTGTATGAATGAGAAAAGGACTGATTGAATGACTGAGTGAA-TGGTTGTTGGAGTGAGGAGGAAA----AACAAATTTACCTTTGAAATCTAGGCAGTGTCTTCAAATCTTGGTTGTCTTTGTGT-----------------AAACTGGTTTATTCCTC----AAACTTATTT-----TGTTGCAGAAGTTTGGAATTAAATAGCTTAAGCAACAGTTCAAATCTCAGAATTGTGTTTTTCCATTTCTAAAAGAGCCCAGTGGAGTGAAAATTCTCCAACAAGTCAGTG---------------------TGAAAGTAATAGGATTCTA----TGGCTTAAGAAATAAAACCACATTTAATTA-TCACGATATCAGAAGCCTA---AAATctcgctattcagggtgtgatctgcctcaacaggaagcttattggaactacagcctctcaggccccaccgcagacctattgaatcaaaatctgtactttaacaagatcctccaggtgattctttatgtttattaaagtttgagaagtaAATTTTGGTTTGGTGCCATGACTCAATAATGTCAAatt-------------------------------------cccagcctgtttccttttcat-atccagaggattgtgcctcatggtagcaagatagctgctgtagtacaaatcatcacatcctcactcaacgacattcaaggcaggatgggctgaaaaggccaactgctttcatctag--gagggaaacatatcccagatgtcccca i calJac3.chr6 C 0 C 0 s mm10.chr2 49732532 1122 + 182113224 TTTCTGTATCAGAACCAAGTGCTACGCAGCAGTCAGCCTTCAGAGTGCTTTTCCACTGAGATCAGAGG-AGTGATT--AAAGAGCTGGGTCTGGCATGG-GCTGTTGAGCTCTGGAGGTCACAGGTG--------GAAATTCATGGGCCACCTTGGTAACCTGTGGCTG-ACTTTGTTTTCCAGACGACACTGACAACCACCCAGCGAGAGCTGAGTCAGCTGCAAGAGCTTAGTAACCACCAGAAAAAGAGGGCCACAGAGATCCTGAACCTGCTTCTCAAGGACCTGGGGGAGATAGGCGGAATTATTGGCACCAACGATGTGAAGACTGTAAGCCAGAC----TTGTGTTCTCTGTTCCTACCCT------------------GACTGGTGTGATCCGAG--TCAAGCTCTGCAGCACCTGAGGCTCAGGGCTGTACTCTGCACCTGGCGCATGCTGA-----------------AAAAGGAGAGCTGG---------CGCATGAAGCAGGGGCTGGGG-GAGGGGATGGAGAGGAACAGTTTGCCTTTCAGATCTGGGGGGCATCTTCCAGTCTTGGTTGGTTTTGTGT-----------------GGCTTGTTTTTTTTTTTCTTTAGCCTTACCTGC-AATGCT-CTCACACTGGGGCTCAGCTGGGAGAAGCTGCAGGCCAGGTCTCAGTCCCCACCCTTCCCCACCCCCCCAG--CCCAATGCAGTGAGAATTCTCCAGCCAAGCAGTACGAATTGAGAAAGCTTCCAGCTGAAAGTCATAGGCAGCTAGCAGGGGCTGAAAGAGT-AAACCACACTTAATTATGTGTAACAGGAGGAGGCT----AGGCCTTGTTACTCAGG--GTcatctgcatcacctggg-gctaattagcaatttagac-cccaggctgacc-tcagacatactgaagcggactctgtgttttaacaaga---------tgactcgt--ggcttattaaagttagagaaCCCAATttggtttcattgcagtggctccacaa-------tccacaggacccgactgttgtgtttcctctctgcccatccttagctactttcattttcat-atctttacgcttttgcctc---gtagcaagatcactgctgtagcaccaactgtcaagtctttattcatttacatccagTGT--------GCTGTATCACTAACCACTTTTATCCAGGAGAGGGGACTATATACCAGAAATTCCCA i mm10.chr2 I 510 I 36 s canFam3.chr19 50642683 1197 + 53741614 TTTTTATCAAAGAAGGCAGTAAGGTACTGTAGTTTGACTTTAGAGGACTCTTTCATTGAAATCACATGAAATGATA--AAAGAATTCCATCCTACCTTATGTTGTTGTTCTTTGCA------ATGCAGTGGGTATG-AATTGATGGGCAGCTCTTTTAATTTGCTGTTAAAATATGTTTTTCAGACGACATTGACAACCACACAGAGAGAACTGAGCCAGCTACAAGAGCTTAGCAACCACCAGAAAAAGAGGGCTACTGAGATTCTGAATTTGCTGTTGAAGGATCTGGGGGAGATAGGTGGAATTATCGGCACCAATGATGTGAAGACTGTAAGCCAGCCCCTCTCTTATCCCCCCTACCTGCTCTTATAATGGTGTGATCCTAAGCAAACAGGGTCTGTGTTTTATTCTTTTGAGTATCCAATGCTTTGCGTGGTGCTTTGCACCTGCCATGTGCTCAGTA-TATTGGTATGAACAAACCAAGGGCTGATTGAATGGCTAAGCGAA-TGACTGGTTGGGTATGGTGGAGGAG--AAGAAAATTACCTTTCGAATATAGGAAATGTCTTCAAATTTTGATAGGCCTTATTC-----------------AAATCGGGTTATTTCTC----ATACTTATATGCCAATGTCACAGGAGTTTGGAATTGTATAGGTTAAGCAACACTTCTAGTCTCAGAATTGTGTTCCTCCTTTTCTGTGAGAACCTAACAGAATAAAAATTCCCCAGACAATCAgtatgaattaggaaagctttcagctgaaagtaataggattctaacagtggcttaaaaaataaatccacatttaattattcacaatatgagaattttgtgtagaatttgctattcaggttgtgatctgtgtcacctgggagtttgttggaactatagattctttgggccacc-gcagaccagtcaaactagaatcttcattttaacaagattgcccgggtcattc--taaccttattaaagttgcagaggcaaattttgatccagtgt-----cccaacaatgtcaaggaatcggg---ccttttctttgtttcctttct-agttttgttagcttgttagcttttcac-atctgtagacttttgtctcgtgctagcaagatagctgctagagcaccaacgatcatatcgtcacacaaccacatccgaggcaggatggactgaaaaggcagccaactttcaactaa--gagggaaccatatctcctaagtccct- i canFam3.chr19 C 0 C 0 a score=478694.000000 s hg38.chr2_GL582966v2_alt 56642 135 + 96131 ggagacatatccttacacttcattggccagaactggatcacatgaccactccacatttc---------tgggaaagcaaaggggactgggattactataattggcataga--------ccaatcatgatgaatcccttggggttgTACATAT s panTro4.chr2B 153169417 135 + 247518478 ggagacatatccttacacttcattggccagaattggatcacatgaccactccacatttc---------tgggaaagcaaaggggactgggattactataattggcataga--------ccaatcatgatgaatcccttggggttgTACATAT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38375880 135 + 135000294 ggagacgtatccttacagttcattggccagaatttgatcacatgaccactccacatttc---------tgggaaagcaaaggggaatgggattactataattggcataga--------ccaatcatgatgaatcccttggggttgTACACAT i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82328470 135 - 85365473 ggagacatatccttacacttcattggccagaattggatcacatgaccactccacatttc---------tgggaaagcaaaggggaatgggattactataattggcataga--------ccaatcatgatgaatcccttggggttgTACACAT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11939788 143 + 106825570 ggagacatatccttacacttcattggccagaattggatcacatgaccactccacatttc---------tgggaaagcaaaggggaataggattactataattggcataaatcaatcatccaatcatgatgaatcccttggggttgTACACAT i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37643941 143 + 132586672 ggagacatatccttacacttcattggccagaattggatcacatgaccactccacatttc---------tgggaaagcaaaggggaataggattactataattggcataaatcaatcatccaatcatgatgaatcccttggggttgTACACAT i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11301177 143 + 104110932 GGAGACATATCCTTACACTTCATTGGCCAGAATTGGATCACATGACCACTCCACATTTC---------TGGGAAAGCAAAGGGGAATAGGATTACTATAATTGGCATAAATCAATCATCCAATCATGATGAATCCCTTGGGGTTGTACACAT i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34399599 143 + 128595539 ggagacatatccttacacttcattggccagaattggatcacatgaccactccacatttc---------tgggaaagcaaaggggaataggattactataattggcataaatcaatcatccaatcatgatgaatcccttggggttgTACACAT i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87885749 135 - 158406734 ggagacatttccttacacttcattggccaggattggatcacatgaccactccacgtttc---------tgggaaagcaaaggggaataggattactataattggcataaa--------ccaattgtgatggatcccctcgtgttgTATGCAT i calJac3.chr6 C 0 C 0 s canFam3.chr19 50643880 143 + 53741614 gtagatgt-cccttataccttgttagccagaattggatcacatggtcaccccgaattgcaagagaaattgggaaagcaaagagaagtagtattgctatgattggcttcaa--------ccaactgtgatttatcccctggagttgTACAGCC i canFam3.chr19 C 0 C 0 e mm10.chr2 49733654 36 + 182113224 I a score=430188.000000 s hg38.chr2_GL582966v2_alt 56777 181 + 96131 TGGTGCTCTTGG--------------ttatttgtttatttatttatttatttattttgagacaaacttttgc-tttgtcaccc--aggctggagtgcagtggcgcaatctcagctcactgcaacctctgcctcctgggttc-aaccaattcatgtgcctcagtctgccgagtagctgggattacaggcatgtgccacca s panTro4.chr2B 153169552 181 + 247518478 TGGTGCTCTTGG--------------ttatttgtttatttatttatttatttattttgagacaaacttttgc-tttgtcaccc--aggctggagtgcagtgacgcaatctcggctcactgcaacctctgcctactgggttc-aagcaattcttgtgcctcagtctgccgagtagctgggattacaggcgtgtgccacca i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38376015 162 + 135000294 TGGTGCTCTTGG--------------tttttttt-------------------ttttgagacagacttttgc-tttgttgccc--aggctggagtgcagtggtgcaatctcggctcactgcaacctctgccttcggggttc-aagcaattctcgtgcctcagtctgctgagtagctgggattacaggcatgtaccacta i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82328605 165 - 85365473 TGGTGCTCTTGG--------------tttttttt---------------ttttttttgagacagacttttgc-tttgtcaccc--aggctggattgcagtggcacagtctcggctcactgcaacctctgcc-gctgggttc-aagcaattctcgtgcctcagtctgctgagtagctgggattacaggcatgtgccacca i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11939931 186 + 106825570 TGTTGTTCTTGttttttgtttttttgttttttgt----------tttttttttttttaagacagtgttttgcttttgtcgccc--aggctggagtgcagtggcacaatctcagctcactgcaacctctgcctcctgggttc-aagcaattctcatgcctcagtctgctgagtagctgggattacaggcatgtgccacca i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37644084 180 + 132586672 TGTTGTTCTTGttttttgttt-----ttttttg-----------tttttttttttttaagacagtgttttgcttttgtcgccc--aggctggagtgcagtggcacaatctcagctcactgcaacctctgcctcctgggttc-aagcaattctcatgcctcagtctgctgagtagctgggattacaggcatgtgccacca i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11301320 170 + 104110932 TGTtgttcttgg--------------ttttttg------------ttttttttttttaagacagtgttttgcttttgtcgccc--aggctggagtgcagtggcacaatctcagctcactgcaacctctgcctcctgggttc-aagcaattctcatgcctcagtctgctgagtagctgggattacaggcatgtgccacca i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34399742 169 + 128595539 TGTTGttcttgt--------------tttttt-------------ttttttttttttaagacagtgttttgcttttgtcaccc--aggctggagtgcagtggcacaatctcagctcactgcaacctctgcctcctgggttc-aagcaattctcatgcctcagtctgctgagtagctgggattacaggcatgtgccacca i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87885884 171 - 158406734 TGGTGCTCTTGG--------------tttttt-------------tgtttgttttttgagacagagttttgc-tctgtcacccagagactggagtgcagtggtgcaatctcggctcactgcaatctctgcctcccatattctaggtgattcttgtgcctcagtctcccgagaagctggaattacaggcatgtgccacca i calJac3.chr6 C 0 M 204 e canFam3.chr19 50644023 0 + 53741614 C e mm10.chr2 49733654 36 + 182113224 I a score=57716.000000 s hg38.chr2_GL582966v2_alt 56958 30 + 96131 ggccctgctaatttttttattattattatt s panTro4.chr2B 153169733 29 + 247518478 ggccctgctaattttttttttattatta-t i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38376177 29 + 135000294 ggccctgctaa-tttattattattattttt i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82328770 29 - 85365473 ggccctgctaa-tttattattattgttatt i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11940117 30 + 106825570 ggccctgctaatttttgtattattattatt i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37644264 30 + 132586672 ggccctgctaatttttgtattattattatt i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11301490 30 + 104110932 ggccctgctaatttttgtactattattatt i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34399911 30 + 128595539 ggccctgctaatttttgtattattattatt i chlSab2.chr10 C 0 C 0 e canFam3.chr19 50644023 0 + 53741614 C e calJac3.chr6 87886055 204 - 158406734 M e mm10.chr2 49733654 36 + 182113224 I a score=397101.000000 s hg38.chr2_GL582966v2_alt 56988 128 + 96131 tttttaagtggagatggggtttctccatattggccaggctggtctcgaattcctggcctcaagtgattcgcctgcctctgcctcccaaagtgctgggaatacaggcgtgagccaccacacctggccAT s panTro4.chr2B 153169762 128 + 247518478 tttttaagtggagatggggtttctccatgttggccaggctggtctcgaattcctggcctcaagtgattcgcctgcctctgcctcccaaagtgctgggaatacaggcgtgagccatcacacctggccAT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38376206 128 + 135000294 tttttaagtagagatggggtttctccatgttggccaggctggtctcgaattcctggcctcaagtgattcgcctgcctctgcctcccaaagtgctgggaatacaggagtgagccaccacacctggccAT i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82328799 128 - 85365473 tttttaagtagagatggggtttctccatgttggccaggctggtctcgaattcctggcctcaagtgattcacctgcctctgcctcccaaagtgctgggaatacaggcgtgagccaccacacctggccAT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11940147 128 + 106825570 tttttaagtagaggcggggtttctccatgttggccaggctggtctcaaattcctggcctcaagtgttttgctcgcctctgcctcccaaagtgctgggaatacaggcgtgagccaccacatctggccAT i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37644294 128 + 132586672 tttttaagtagaggcggggtttctccatgttggccaggctggtctcaaattcctggcctcaagtgttttgctcgcctctgcctcccaaagtgctgggaatacaggcgtgagccaccacatctggccAT i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11301520 128 + 104110932 tttttaagtagaggcggggtttctccatgttggccaggctggtctcaaattcctggcctcaagtgttttgctcacctctgcctcccaaagtgctgggaatacaggcgtgagccaccacatctggccat i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34399941 128 + 128595539 tttttaagtagaggcagggtttctccatgttggccaggctggtctcaaattcctggcctcaagtgtttcgctcgcctctgcctcccaaagtgctgggaatacaggcgtgagccaccacacctggccAT i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87886263 128 - 158406734 TtttttagtagagatgggatttctccatgttggccaggctgatctcaaactcctggcctcaagtgatttgcccaccttggcctcccaaagtgctgggaatacaggcatgagccactgtgcctggtcAT i calJac3.chr6 M 204 C 0 e canFam3.chr19 50644023 0 + 53741614 C e mm10.chr2 49733654 36 + 182113224 I a score=622497.000000 s hg38.chr2_GL582966v2_alt 57116 189 + 96131 TGGTGCTGTTGACAGCGA-GAAAGTAAGAGATGTGGGGATAATAGGGGTGGTATAAAGTTGTCCAGAAACTAGGAATAGAAGGAAGAGATAGAGTTAAAAATGGTATCAGCCCAGAACAGGTAACAATTTGCTGGAATATAGAAAGGCT-ATTGTTGTTATTAACCAAAAAGACAGGGTAGAGACATTTTT s panTro4.chr2B 153169890 189 + 247518478 TGGTGCTGTTGACAGCGA-GAAAGTAAGAGATGTGGGGATAATAGGGGTGGTATAAAGTTGTCCAGAAACTAGGAATAGAAGGAAGAGATAGAGTTAAAAATGGTATTAGCCCAGAACAGGTAACAATTTGCTGGAATATAGAAAGGCC-ATTGTTGTTATTAACCAAAAAGACAGGGTAGAGACATTTTT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38376334 189 + 135000294 TGGTGCTGTTGACAGCGA-GAAAGTAAGAGATGTGGGGATAATAGGCGTGGTATAAAGTTGTCCAGAAACTAGGAATAGAAGGAAGAGATAGAGTTAAAAATGGTGTCAGCCCAGAACAGGTAACAATTTGCTGGAATATAGAAAGGCC-ATTGTTGTTATTAACCAAAAAAACAGGGTAGAGACATTTTT i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82328927 189 - 85365473 TGGTGCTGTTGACAGCGA-GAAAGTAAGAGATGTGGGGATAATAGGGGTGGTATAAAGTTGTCCAGAAACTAGGAATAGAAGGAAGAGATAGAGTTAAAAATGGTATCAGCCCAGAACAGGTAACAATTTGCTGGAATATAGAAAGGCC-ATTGTTGTTATTAACCAAAAAAACAGGGTAGAGACATTTTT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11940275 189 + 106825570 TGGTGCTGTTGACAGCAA-GAAAGTCAGAGATGTGGGGATAATAGGGGTGGTATAAAGCTGTCCAGAAGCTAGGAATAGAAGGAAGAGATAGAATTAAAAATGGTATCAGCCAAGAACAGGTAACAATTTGCTGGAATATAGAAAGGCCAATTGTTGTCATTAACC-AAAAAAAAGGATAGAGACATTTTT i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37644422 189 + 132586672 TGGTGCTGTTGACAGCAA-GAAAGTCAGAGATGTGGGGATAATAGGGGTGGTATAAAGCTGTCCAGAAGCTAGGAATAGAAGGAAGAGATAGAATTAAAAATGGTATCAGCCAAGAACAGGTAACAATTTGCTGGAATATAGAAAGGCCAATTGTTGTCATTAACC-AAAAAAAAGGATAGAGACATTTTT i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11301648 190 + 104110932 tgGTGCTGTTGACAGCAA-GAAAGTCAGAGATGTGGGGATAATAGGGGTGGTATAAAGCTGTCCAGaagctaggaatagaaggaagagATAGAATTAAAAATGGTATCAGCCAAGAACAGGTAACAATTTGCTGGAATATAGAAAGGCCAATTGTTGtcattaaccaaaaaaaaaggatagagacattttt i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34400069 189 + 128595539 TGGTGCTGTTGACAGCAA-GAAAGTCAGAGATGTGGGGATAATAGGGGTGGTATAAGGCTGTCCAGAAGCTAGGAATAGAAGGAAGAGATAGAATTAAAAATGGTATCAGCCAAGAACAGGTAACAATTTGCTGGAATATAGAAAGGCCAATTGTTGTCATTAACC-AAAAAAAAGGATAGAGACATTTTT i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87886391 187 - 158406734 TGGTGCTCTTGATGGCTA-GAAAGTA--AGATGTGGGGAGAATAGGGGTGGTATAAAGTTGTCTAGGAGCTAGGAATAGAAGGAAGAGAGATAATTAAAAATGGTGTCAGCCAAGAGCAGTTAACAATTTTCTGGAATATAGAAAGGCC-ATTGTTGTCATTAACCAAAAAAACAGGGTAGAGACACtttt i calJac3.chr6 C 0 C 0 s canFam3.chr19 50644023 168 + 53741614 TGGTGCCACTGATAGCAAGGAAGGTAAGGGAGGGAGGAAGAAT-GGGGTGGTATGAAGTTGTCCATGTGCTAGGAATAGAGGGGTAAGAGAGCATGCATAATGCTATCAGCTAAGAACAAGGAACAGTTAGCCATGATATAGAAA----------------------GAGATATAGGATAAAGATTttttt i canFam3.chr19 C 0 I 195 e mm10.chr2 49733654 36 + 182113224 I a score=57053.000000 s hg38.chr2_GL582966v2_alt 57305 32 + 96131 AAAACAAAACaaaaagctttatt------------------------------------------------------------------------gaggtataa s panTro4.chr2B 153170079 32 + 247518478 AAAACAAAACaaaaagctttatt------------------------------------------------------------------------gaggtataa i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38376523 30 + 135000294 AAAACAAAAT--AAagctttatt------------------------------------------------------------------------gaggtataa i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82329116 30 - 85365473 AAAACAaaac--aaagctttact------------------------------------------------------------------------gaggtataa i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11940464 102 + 106825570 AAAACAaaac--aaagctttattgaggcataatttacataaagctgtacatatttaatgtatgcattctgagaaattttgacatatgtgtacaGGgaggcataa i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37644611 30 + 132586672 AAAACAaaac--aaagctttatt------------------------------------------------------------------------gaggcataa i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11301838 30 + 104110932 aaaacaaaac--aaagctttatt------------------------------------------------------------------------gaggcataa i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34400258 30 + 128595539 AAAACAaaac--aaagctttatt------------------------------------------------------------------------gaggcataa i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87886578 24 - 158406734 aaaacaaaat-------tttatt------------------------------------------------------------------------g-ggtataa i calJac3.chr6 C 0 C 0 e canFam3.chr19 50644191 195 + 53741614 I e mm10.chr2 49733654 36 + 182113224 I a score=2045969.000000 s hg38.chr2_GL582966v2_alt 57337 611 + 96131 tttacataaagctgcacatatttaaagtatacagtctgagaaattttgacgtatgtgtacagtcatgaaaccatcagcaccgttaagataatg------aatgtccccatctcccccaaaagtatgtgggggcagtttctggtctctctattttgtttcatggatcaaatcttcctgccaataccacaatgttttgatcaccatagcttt------ataataaTACAGCATCTTATACAAAGGAGTCATTGATGAATATATGTTGATTTTGTTGAGCTGGGGAATGGT-ATTACATTGCTTACCTTACATGTCACAATTCCCTGAAACCAAATTCTTTGAATTTAGCCATTTTATCTTTAAAAGGCTGAATTCTACATCAGTCTGCTTAGTGGGGACACTCAGGTCGTGAGCTGGGATTGTTAAATACTGGAAAATGCT--CCCAAGATCAGGCTTCCTTTTGTAGACTATTTCTGGGAAATGTTGAAAGCCGTTTTTGGATGGTGT-AACAGGTCCCAGCTTAGAGTACATGACCGCTCGTAAATGTAACCATTCTTTCATGGAACCTTTATTGTAACTGATTATTTCATAAATCCTTGTGAATGAATCTAATTCTAGCACAGACT s panTro4.chr2B 153170111 609 + 247518478 tttacataaagctgcacatatttaaagtatacagtctgagaaattttgac--atgtgtacagtcatgaaaccatcagcaccgttaagataatg------aatgtccccatctcccccaaaagtatgtgggggcagtttctggtctctctattttgtttcatggatcaaatcttcctgccaataccgcaatgttttgatcaccatagcttt------ataataaTATAGCATCTTATACAAAGGAGTCATTGATGAATATATGTTGATTTTGTTGAGCTGGGGAATGGT-ATTACATTGCTTACCTTACATGTCACAATTCCCTGAAACCAAATTCTTTGAATTTAGCCATTTTATCTTTAAAAGGCTGAATTCTACATCAGTCTGCTTAGTGGGAACACTCAGGTTGTGAGCTGGGATTGTTAAATACTGGAAAATGCT--CCCAAGATCAGGCTTCCTTTTGTAGACTATTTCTGGGAAATGTTGAAAGCCCTTTTTGGATGGCGT-AACAGGTCCCAGCTTAGAGTACATGACCGCTCGTAAATGTAACCGTTCTTTCATGGAACCTTTATTGTAACTGATTATTTCATAAATCCTTGTGAATGAATCTAATTCTAGCACAGACT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38376553 606 + 135000294 tttacataaagctgcacata-ttaaagtatacagtctgagaaattttgacatatgtgtacagtcatgaaaccatcagcaccgttaagataatg------aatgtctccatctcccccaaaagtatgtggggacagtttctgg----tctattttgtttcatggatcaaatctttctgccaataccacaatgttttgatcaccatagtttt------ataataaTATAGCATCTTATACAAAGGAGTCATTGATGAATATATGTTGGTTTTGTTGAGCTGGGGAATGGT-ATTACATTGCTTACCTTACATGTCACAATTCTCTGAAACCAAATTCTTTGAATTTAGCCATTTTATCTTTAAAAGGATGAATTCTGCATCAGTCTGCTTAGTGGGAACACTCAGGTTGTGAGTTGGGATTGTTAAATACTGAAAAATGCT--CCCAAGATCAGGCTTCCTTTTGTAGACTATTTCTGGGAAATGTTGAAAGCCCTTTTTGGATGGCAT-AACAGGTCTCAGCTTAGAGTACATGACTGCTCATAAATGTAACCATTCTTTCATGGAACCTTTATTGTAACTGATTATTTCATAAATCCTTGTGAATGAATCTAATTCTAGCACAGACT i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82329146 608 - 85365473 tttacataaagctgcacatatttaaagtatacattctgagaaattttgacatatgtgtacagtcatgaaaccatcagcaccgttaagataatg------aatgtctccatctcccccaaaagtatgtgggggcagtttctgg----tctattttgtttcatggatcaaatctttctgccaataccacaatgttttgatcaccatagcttt------ataataaTATAGCATCTTATACAAAGGAGTCATTGATGAATATATGTTGATTTTATTGAGCTGGGGAATGGT-ATTACATTGCTTACCTTACATGTCACAATTCCCTGAAACCAAATTCTTTGAATTTAGCCATTTTATCTTTAAAAGGCTGAAATCTACATCAGTCTGCTTAGTGGGAACACTCAGGTTGTGAGTCGGGATTGTTAAATACTGGAAAATGCT--CCCAAGATCAGGCTTCCTTTTGTAGACTATTTCTGGGAAATGTTGAAAGCCCTTTTTGGATGGCGTAAACAGGTCTCAGCTTAGAGTACATGACTGCTCGTAAATGTAACCATTCTTTCATGGAACATTTATTGTAACTGATTATTTCATAAATCCTTGTGAATGAATCTAATTCTAGCACAGACT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11940566 610 + 106825570 tttacataaagctgcacatatttaaagtatgcagtctgagaaattttgacatatgtgtacagtcatgaaaccatcagcaccattaagataatg------aatgtgtccatctctcccaaaagtatgtgggggaggtttctggtctctctattttgtttcatggatcaaatctttctgccaataccacaatgttttgatcaccatagcttt------ataataaTATAGCCTGTTATACAAAGGAGTCATTGACGAATATATGTTGATTTTGTTGAGCTGGGGAATGGT-ATTACATTGCTTACCTTACATGTCACAATTTCCTGAAACCAAATTCTTTGAATTTAGCCATTTTGTCTTTAAAAGGCTGAACTCTACATCAGTCTGCTTAGTGGGAACACTCAAGTTGTGAGTTGGGATTGTTAAATACTGGAAAATGCT--CCCAAGATCAGGCTT-CTTTTGTAGACTATTTCTGGGAAATGTTGAAAGCCCTTTTTGGATGGCGT-AACAGGTCTCAGCTTAGAGTACATGACCTCTCATAAACGTAACCATTCTTTCATGGAACATTCATTGTAACCGATTATTTCATAAATCCTTGTGAATGAATCTAATTCTAGCACAGACT i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37644641 610 + 132586672 tttacataaagctgcacatatttaaagtatgcagtctgagaaattttgacatatgtgtacagtcatgaaaccatcagcaccattaagataatg------aatgtgtccatctctcccaaaagtatgtgggggaggtttctggtctctctattttgtttcatggatcaaatctttctgccaataccacaatgttttgatcaccatagcttt------ataataaTATAGCCTGTTATACAAAGGAGTCATTGATGAATATATGTTGATTTTGTTGAGCTGGGGAATGGT-ATTACATTGCTTACCTTACATGTCACAATTTCCTGAAACCAAATTCTTTGAATTTAGCCATTTTATCTTTAAAAGGCTGAACTCTACATCAGTCTGCTTAGTGGGAACACTCAAGTTGTGAGTTGGGATTGTTAAATACTGGAAAATGCT--CCCAAGATCAGGCTT-CTTTTGTAGACTATTTCTGGGAAATGTTGAAAGCCCTTTTTGGATGGCGT-AACAGGTCTCAGCTTAGAGTACATGACCTCTCATAAACGTAACCATTCTTTCATGGAACATTCATTGTAACCGATTATTTCATAAATCCTTGTGAATGAATCTAATTCTAGCACAGACT i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11301868 610 + 104110932 tttacataaagctgcacatatttaaagtatgcAGTCTGAGAAATTTTGACATATGTGTACAGTCATGAAACCATCAGCACCATTAAGATAATG------AATGTGTCCATCTCTCCCAAAAGTATGTGGGGGAGGTTTCTGgtctctctattttgtttcatggaTCAAATCTTTCTGGCAATACCACAATGTTTTGGTCACCATAGCTTT------ATAATAATATAGCCTGTTATACAAAGGAGTCATTGATgaatatatgttgattttgttgaGCTGGGGAATGGT-ATTACATTGCTTACCTTACATGTCACAATTTCCTGAAACCAAATTCTTTGAATTTAgccattttatctttaaaaggcTGAACTCTACATCAGTCTGCTTAGTGGGAACACTCAAGTTGTGAGTTGGGATTGTTAAATACTGGAAAATGCT--CCCAAGATCAGGCTT-CTTTTGTAGACTATTTCTGGGAAATGTTGAAAGCCCTTTTTGGATGGCGT-AACAGGTCTCAGCTTAGAGTACATGACCTCTCGTAAACGTAACCATTCTTTCATGGAACATTCATTGTAACCGATTATTTCATAAATCCTTGTGAATGAATCTAATTCTAGCACAGACT i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34400288 608 + 128595539 tttacataaagctgcacatatttaaagtatgcagt-tgagaaattttgacatatgtgtacagtcatgaaaccatcagcaccattaagataatg------aatgtgtccatctctcccaaaagtatgtgggggaggtttctggtctctctattttgtttcatggatcaaatgtttctgccaataccacaatgttttgatcaccatagcttt------ataataaTATAGCCTGTTATACAAAGGAGTCATTGATGAATATATGTTGATTTTGTTGAGCTGGGGAATGGT-ATTACATTGCTTACCTTACATGTCACAATTTCCTGAAACCAAATTCTTTGAATTTAGCCATTTTATCTTTAAAAGGCTGAACTCTACATCAGTCTGCTTAGTGGGAACACTCAAGATGTGAGTTGGGATTGTTAAATACTGGAAAA-GCT--CCCAAGATCAGGCTT-CTTTTGTAGACTATTTCTGGGAAATGTTGAAAGCCCTTTTTGGATGGCGT-AACAGGTCTCAGCTTAGAGTACATGACCTCTCATAAACGTAACCGTTCTTTCATGGAACATTCATTGTAACCGATTATTTCATAAATCCTTGTGAATGAATCTAATTCTAGCACAGACT i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87886602 598 - 158406734 tttacataaagctgttcatattgaaagtatacagtctgagaaatttcgacatatgtgtacactcatgaaaccatcagcaccgttaagataatg------agtgtctccatctctgccaaaagtatgtgggg-ctctttctggtctctctattttgtttcgtggatcaagtctttctgccaataccacaatgttttgattcccatagcttt------ataataaTATAGCATCTTACACAGAGGAGTCAGTGATG-ATATATGTTGATTTTCTTGAGCTGGGGAATGGTAATGACATTGCTTACCTTACATCTCACAATTTGCTGAAACCAAAATCTTTGCATTTAGCCATTTTATCTTTAGAAAGATGAATTCTACATCAGTCTGTTTAGTGGGAACACTGAGGTTGTGAGTTGAGATTGTTAAATACAGAAAA--GCT--CCCAAGATTAGGCTTCCTTTTGTAGACTATTGCTGGGAAATGATGAAAGCTCTTTTTGGAGGGCGT-ATCAGGTCTCTACTTAGAGTACATGACTGCCTAT-----TAACCATTCTTTCATGGAACCTGTATGGTAACTGAATATTTCATAAATCCTTGTGAGTGAATCTAATTCTAGCAC----- i calJac3.chr6 C 0 C 0 s canFam3.chr19 50644386 586 + 53741614 TTTAAAAATAGCT-------ttataagtgtatggtctgaaaagttttgatgtat-tatatcctcatgaaaccattacca-tggtaagataacataagataacatatccatcactcccagaagtgtatagga-ctgtttctag--tctctattttatt-----gatctaattgttatactaaaaccaca--gttgtgattactgttactttacaataaTAATAATACAGCACCTTGTACAGAGTAGCCATGGGTACATGTG-GTGGATTTTGGCAAGCCAAAGAATGGA-A------AGCTCAACTTCCACTTCACGAGCCCCTAAAATCAAAATCTTTGAGGTTAG---------CTTTTAAAGGCTGAGTTCTCCATCAGTCTGCTTTGTGAGAACACTCAGGCTTTGAGCTGGGATTGTTAAATACTAGGAAGGGCTACCCCCAATTC---CTTCTGTTTATAGAC-ATTTCTGGGAAACATAGAAATCTATTCTTAGATGATAT-CACAGATCTAGGTGTAGAGTATACGACCTCTTGTAAACCTAATCCTTCTTTCATAGAACCTCTATTGTAACTGAATATTTCATGAATCTTTGCGATTGAATCTAATTTTAGCACAGAAT i canFam3.chr19 I 195 C 0 e mm10.chr2 49733654 36 + 182113224 I a score=485831.000000 s hg38.chr2_GL582966v2_alt 57948 131 + 96131 TCTCAGATACTATAGAGTTAATCTTATTAAGCTTCAATTTGGTGATTTTATATTTGAAGATTTAA-TTTTTTGAACCATACATTGGTGTTGAGCAATAAAATT-CGATGTG-AGG-TGATTAAATGGCCTCACAA- s panTro4.chr2B 153170720 131 + 247518478 TCTCAGATACTATAGAGTTAATCTTATTAAGCTTCAATTTGGTGATTTTATATTTGAAGATGTAA-TTTTTTGAACCATGCATTGGTGTTGAGCAATAAAATT-CGATGTG-AGG-TGATTAAATGGCCTCACAA- i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38377159 132 + 135000294 TCTCAGATACTATAGAGTTAATCTTATTAAGCTTCAGTTTGGTGATTTTATATTTGAAGATTTAATTTTTTTGAAACATACATTGGTGTTGAACAATAAAATT-TGATGTG-AGG-TGATTAAATGCCCTCACAA- i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82329754 131 - 85365473 TCTCAGATACTATAGAGTTAATCTTATTAAGCTTCAGTTTGGTGATTTTATATTTGAAGATTTAA-TTTTTTGAACCATACATTGGTGTTGAGCAATAAAATT-CGACGTG-AGG-TGATTAAATGGCCTCACAA- i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11941176 131 + 106825570 TCTCAGATACTATAGAGTTAATCTTATTAAGCTTCAGTTTGGTGATTTTGTATTTGAAGATTTAA-TTTTTTGAACCATACATTGGTGTTGAGCAATAAAATT-TGATGTG-AGG-TGATTAAGTGGCCTCAAAA- i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37645251 131 + 132586672 TCTCAGATACTATAGAGTTAATCTTATTAAGCTTCAGTTTGGTGATTTTGTATTTGAAGATTTAA-TTTTTTGAACCATACATTGGTGTTGAGCAATAAAATT-TGATGTG-AGG-TGATTAAGTGGCCTCAAAA- i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11302478 131 + 104110932 TCTCAGATACTATAGAGTTAATCTTATTAAGCTTCAGTTTGGTGATTTTGTATTTgaagatttaa-ttttttgaacCATACATTGGTGTTGAGCAATAAAATT-TGATGTG-AGG-TGATTAAGTGGCCTCACAA- i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34400896 131 + 128595539 TCTCAGATACTATAGAGTTAATCTTACTAAGCTTCAGTTTGGTGATTTTGTATTTGAAGATTTAA-TTTTTTGAACCATACATTGGTGTTGAGCAATAAAATT-TGATGTG-AGG-TGATTAAGTGGCCTCACAA- i chlSab2.chr10 C 0 I 143 s calJac3.chr6 87887200 126 - 158406734 ------ATACTGTAGAGTTAACCTTATTAAGCTTCAGTTTGGTGATTTTATATTTGGAGATTTAA-TTTTTGGAACCATACATTTGTGTTGAGCAATAAAATTCTGATGTG-AAG-TGATTAAATGGCCTCACAA- i calJac3.chr6 C 0 C 0 s mm10.chr2 49733690 131 + 182113224 TTTCAGGCCCTGCCAGGTTAAGCTT-TTAAGTCACGGCTAGGCTGGTCTGTGCTTGACGGT-TAA-TGTTTAGAGCCACATGTTGCTGTTGAGCAGTGTAGTTCTGACATG-GGGCTGATTAAAGGCTCGCAGGA- i mm10.chr2 I 36 C 0 s canFam3.chr19 50644972 134 + 53741614 TCTCAGATACTATAAGATTAATCCTATTCAGCTCCAGTTTGGTGGCTTTGTGTTTGAGAGTTTAA-TTTTTAGAAGCATGCATTGGTGTGGAGCTGTAAACTTCTGAGATTCGGG-TGATTAAGTGGCCCTTGCAG i canFam3.chr19 C 0 C 0 a score=1161879.000000 s hg38.chr2_GL582966v2_alt 58079 282 + 96131 TATGAAGGTGGAGTTGATATATGGGAAGTTGATGCTTGCTGCTGATAACGATAAAGGAAGAAGGTATTTTTATGCTAAGTTCTAAAATAGAGCTGATGA-AAATGCTAATGAAATC-AGGAGTGTCTGGGTGCTTCAGTATTGAAAAAAGAGTCTTTACCTTTGGGAATCTGAACTATGATTGAGATTGAGATTGTTTTTAAATACTCAATTGGATATTTTTGAGATTATTTTTGGATTCCAGACATTGGATGTCC-TAGTTAATTTCATTGATAGCCA-TCATTT----------------------------------- s panTro4.chr2B 153170851 282 + 247518478 TATGAAGGTGGAGTTGATATATGGGAAGTTGATGCTTGCTGCTGATAACGATAAAGGAAGAAGGTATTTTTATGCTAAGTTCTAAAATAGAGCTGATGA-AAATGCTAATGAAATC-AGGAGTGTCTGGGTGCTTCAGTATTGAAAAAAGAGTCTTTACCTTTGGGAATCTGAACTATGATTGAGATTGAGATTATTTTTAAATACTCAATTGGATATTTTTGAGATTATTTTTGGATTCCAGACATTGGATGTCC-TAGTTAATTTCATTGATAGCCG-TCATTT----------------------------------- i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38377291 282 + 135000294 TATGAAGGTGGAGTTGATATATGGGAAGCTGATGCTTGCTGCTGACAACGATAAAGGAAGAAGGTATTTTTATGCTAAGTTCTAAAATAGAGCTGATGA-AAATGCTAATGAAATC-AGGAGTGTCTGGGTGCTTCAGTATTGAAAAAAGAGTCTTTACCTTTGGGAATCTGAACTATGATTGAGATTGAGATTATTTTTAAATACTCAATTGGATGTTTTTGAGATTATTTTTGGATTCTAGACATTGGATGTCC-TAGTTAATTTCATTGATAGCCC-TCATTT----------------------------------- i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82329885 282 - 85365473 TATGAAGGTGGAGTTGATATATGGGAAGTTGATGCTTGCTGCTGATAATGATAAAGGAAGAAGGTATTTTTATGCTAAGTTCTAAAATAGAGCTGATGA-AAATGCTAATGAAATC-AGGAGTGTCTGGGTGCTTTAGTATTGAAAAAAGAGTCTTTACCTTTGGGAATCTGAACTATGATTGAGATTCAGATTATTTTTAAATACTCAGTTGGATGTTTTTGAGATTATTTTTGGATTCCAGACATTGGATGTCC-TAGTTAATTTCATTGATAGCCC-TCATTT----------------------------------- i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11941307 282 + 106825570 TATGAAGGTGGAGTTGATTTATGGGAAGTTGATGCTTGCTGCTGATAACGATAAAGGAAGAAGGTATTTTTATGCTAAGTTCTAAAATAGAGCTGATGA-AAATGCTAATGAAATC-AGGAGTGTCTGGGTGCTTCAGTATTGAAAAAAGAGTCTTTACTTTTGGGACTCTGAAGTATGATTGAGATTGAGATTATTTTTAAATAATCAATTGCATGTTTTTGAGATTATTTTTGGATTCCAGACATTGGATATCC-TAGTTAATTTCATTGATAGCCC-TCATTT----------------------------------- i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37645382 282 + 132586672 TATGAAGGTGGAGTTGATTTATGGGAAGTTGATGCTTGCTGCTGATAACGATAAAGGAAGAAGGTATTTTTATGCTAAGTTCTAAAATAGAGCTGATGA-AAATGCTAATGAAATC-AGGAGTGTCTGGGTGCTTCAGTATTGAAAAAAGAGTCTTTACTTTTGGGACTCTGAAGTATGATTGAGATTGAGATTATTTTTAAATAATCAATTGCATGTTTTTGAGATTATTTTTGGATTCCAGACATTGGATGTCC-TAGTTAATTTCATTGATAGCCC-TCATTT----------------------------------- i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11302609 280 + 104110932 TATGAAGGTGGAGTTGATTTATGGGAAGTTGATGCTTGCTGCTGATAACGATAAAGGAAGAAGGTATTTTTATGCTAAGTTCTAAAATAGAGCTGATGA-AAATGCTAATGAAATC-AGGAGTGTCTGGGTGCTTCAGTATTGAAAAA--AGTCTTTACTTTTGGGACTCTGAAGTATGATTGAgattgagattatttttaaataatcaattgcatgtttttgagattatttttggATTCCAGACATTGGATGTCC-TAGTTAATTTCATTGATAGCCC-TCATTT----------------------------------- i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34401170 282 + 128595539 TATGAAGGTGGAGTTGATTTATGGGAAGTTGATGCTTGCTGCTGATAACGATAAAGGAAGAAGGTATTTTTATGCTAAGTTCTAAAATAGAGCTGATGA-AAATGCTAATGAAATC-AGGAGTGTCTGGGTGCTTCAGTATTGAAAAAAGAGTCTTTACTTTTGGGACTCTGAAGTATGATTGAGATTGAGATTATTTTTAAATAATCAATTGCATGTTTTTGAGATTATTTTTGGATTCCAAACATTGGATGTCC-TAGTTAATTTCATTGATAGCCC-TCATTT----------------------------------- i chlSab2.chr10 I 143 C 0 s calJac3.chr6 87887326 282 - 158406734 TATGAAGGTGGGGTTGATTTATGGGAAGCTGATGCTTGCTGCTGATAATGATAAAGGAAGAATGTATTTTTATGCTAAGTTCTTAAATAGAGCTGATGA-AAATGCTAATGAAATC-AGGAGTGTCTAGGTGCTTCAGTATTAAAAAAAAAGTCTTTACCTTTGGGAATCTGAAGTATGATTGAGATTGAGATTATTTTTAAATACTCAGTTGGATGTTTTTGAGATTATTTTTGGATTCCAGACATTGGATGCCC-TAGTTAATTTCATTGATAGCTC-TCATTT----------------------------------- i calJac3.chr6 C 0 C 0 s mm10.chr2 49733821 263 + 182113224 CCTCA---TGGAGTGGATTTGTGGGACGTTGGCACCTCCTGCTGATAACAATAAGAAAAGA---TATTTTTATGCTAAGATCTTACACTGAGCTGAGGA-ACACATTAGTGAACTCAAAGCGTGTCT--GTGCTTTGCCATTAAA-----GGTCCTTCCTGCCGGAAATCCTAAGTATGA-------TGAGAGGATTTTTAAATACCTAATTGCATG-CTTTGGGATTATTTTTAGGTTCCAGACACTAGATGCCCTTAGCTAATTTCATTGATGACTC-TCACTT----------------------------------- i mm10.chr2 C 0 I 24 s canFam3.chr19 50645106 310 + 53741614 TATGAAGGTGGAGTTGATTTATGAGAAGTTGGCGCCTGCTTCTGATAACGATCAAGGAAGA---TATTTTTACGCTAAGTTCTAAAATAGAGCTGATGAGAAATGCTAATGAAATCAAGGAGTGTCTGGGTGCTTCGGCATTAAAAAAAGAGTCTTTACCTTTGGGAATCTGAAGTATGA------TTGAGATTATTTTTAAATACTTAGCTGGATGTTTTCAAGA-TATTTTTGGGTTCCAGACATTGGATGCCT-TAGTTAATTTCATTGATAACTAGTTATTTTCATTGATAATTCTTACTCATAGAGAGCATATTCT i canFam3.chr19 C 0 C 0 a score=1950341.000000 s hg38.chr2_GL582966v2_alt 58361 609 + 96131 CTATCATTCT-GG------TTTTTTTCATATAATTATGAGTTCATCATTAGGGTGATAAGAGCTAAGGGAGtagttgtatgactttggatgagtgactgtacttctttgggcttcatttttctaatttataaaatgacaagataagctcagacagtatcaaaaattgtcggctcagaaattACTTGACTTCTGCACATTTGTTTTAGATTTATCCTTATAGGTACAGGTACTTTTCTTATTGGTCATGACTA-TGAATTGATATAGTAATTCTTTTGATATAGGAAAATGAACAGATCAAGGGAATTTGTTTCAGTGGTTTTGTATTTTTATTCCT-----AA------------------------AATGCCATTTAATTTTCACAAGGTCCCTCCTGGTAGGGCTCTGGGATGGGGGAAAAATATGACTATTGGAGCCTTCCCCAGTCCACAGTTCTAGAATATGACAGCTCTGAAAAGCCAGAAAACAGAAAAACCCATATATCCCCAGCTCAATCATGTCTTGAAACATTTCCAGAGTCCAGTC---ATTTTGTTTCATCAACAAAACAAGATGAGTCCAGCATATAACAAGATGAGCCCAATGTTAACTTTATCGAAGTTTATGAGTGAGCCTTCTCTTCCTTT s panTro4.chr2B 153171133 638 + 247518478 CTATCATTCT-GG------TTTTTTTCATATAATTATGAGTTCATCATTAGGGTGATAAGAGCTAAGGGAGtagttgtatgactttggatgagtcactgtacttctttgggcttcatttttctaatttataaaatgacaagataagctcagacagtatcaaaaattgtcagctcagaaattacgtgacttctGCACATTTGTTTTAGATGTATCCTTATAGGTACAGGTACTTTTCTTATTGGTCATGACTA-TGAATTGATATAGTAATTCTTTTGATATAGGAAAATGAACAGATCAAGGGAATTTGTTTCAGTGGTTTTGTATTTTTATTCCTTTAGGAATAaatgccattttaatgccattttaatgccatttAATTTTCACAAGGTCCCTCCTGGTAGGGCTCTGGGATGGGGGAAAAATATGGCTATTGGAGCCTTCCCCAGTCCACAGTTCTAGAATATGACAGCTCTGAAAAGCCAGAAAACAGAAAAACCCATATATCCCCAGCTCAATCATGTCTTGAAACATTTCCAGAGTCCAGAC---ATTTTGTTTCATCAACAAAACAAGATGAGTCCAGCATATAACAAGATGAGCCCAATGTTAACTTTATCGAAGTTTATGAGTGAGCTTTCTCTTCCTTT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38377573 584 + 135000294 GTGTCATTCT-GG------TTTTTTTCA------TATGAGTTCATCATTAGGGTGATAAGAGCTAAGGGAGtagttgtatgactttggatgagtcactgtacttctttgggcttcatttttctaatttataaaatgacaagataagctcagacaatatcaaaaattgtcagctcagaaattacatgacttctGCACATTTGTTTTAGATTTATCCTTATAGGTACAGGTACTTTTCTTATTGGTCATGACTG-TGAATTGATATGGTAATTCTTTTGATATAGGAAAATGAACAGATCAAGGGAATTTATTTCAATGGTTTTGTATTTTTATTCCT-----AA------------------------AATGCCATTTAATTTTCACAAGGTCC--------------CTGGGATGGGGGAAAAATATGGCTATTGGAGCCTTCTCCAGTCTACAGTTCTAGAATATGACAGCTCTGAAAAGCCAGAAAACAGAAAAACCCATATATCCCCAGCTCAATCATGTCTTGAAACATTTCCAGAATCCAGTC---ATTTTGTTTCATCAACAAAACA-----AGTCCAGCATATAACAAGATGAGCCCAATGTTAACTTTATCCAAGTTTATGAGTGAGCCTTCTCTTCCTTT i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82330167 609 - 85365473 CTATCATTCT-GG------TTTTTTTCATATAATTATGGGTTCATCATTAGGGTGATAAGAGCTAAGGGAGtagttgtatgactttggataagtcactgtacttctctgggcttcatttttctaatttataaaatgacaagataagctcagacaatatcaaaaattgtcagcttagaaattacatgacttatgCACATTTGTTTTAGATTTATCCTTATAGGTACACGTACTTTTCTTATTGGTCATGACTA-TGAATTGATACGGTAATTCTTTTGATATGGGAAAATGAACACATCAAGGGAATTTGTTTCATTGGTTTTGTATTTTTATTCCT-----AA------------------------AATGCCATTTAATTTTCACAAGGTCCCTCCTGGTAGGACTCTGGGATGGGGGAAAAATATGGCTATTGGAGCCTTCACCAGTCCACAGTTCTAGAATATGACAGCTCTGAAAAGCCAGAAAACAGAAAGACCCATATATCCCCAGCTCAATCATGTCTTGAAACATTTCCAGAGTCCAGTC---ATTTTGTTTCATCAACAAAACAAGATGAGTCCAGCATGTAACAAGATGAGCCCAATGTTAACTTTATCCAAGTTTATGAGTGAGCCTTCTCTTCCTTT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11941589 606 + 106825570 ATATCATTCT-TG------TTTTTTTCATATAATTATGAGTTCATCATTAGGGTGATGAGAGCCAATGGAGTA---gtatgactttgggtgagtcactgtgcttctttgggcttcatttttctaatttataaaatgacaagataagctcagacaatatcgaagattgtcatctcagaaattacatgacttctGCACATTTGTTTTAGATTTATCCTTATAGGTACAGGTACTTTTCTTATTGGTCATAACTG-TGAATAAATATGGTAATTCTTTTGATATAGGAGAATGAACAGATCAAGGAAATTTTCTTCAGTGGTTTTGTATTTTTGTTCCT-----AA------------------------AATGCCATTTAATTTTCACAAGGTCCTTCCTGGTAGGACTCTGGGATGGGGGGAAAATGTGGCCCTTGGAGCCTTCCCCAGTCCATAGTTCTAGAATATGACAGCTCTGAACAGCCAGAAAACAGAAAAACCCATATATCCTCAGCTCAATCATGTCTTGAAACATTTCCAGAGTCCAGTC---ATTTTGTCTCATCAACAAAACAAGATGAGTCCAGCGTATAACAAGATGAGCCCAGTGATAGCTTTATCCGAGTTTATGAGTGAGCCTTCTCTTCCTTT i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37645664 606 + 132586672 ATATCATTCT-TG------TTTTTTTCGTATAATTATGAGTTCATCATTAGGGTGATGAGAGCCAATGGAGTA---gtatgactttgggtgagtcactgtacttctttgggcttcatttttctaatttataaaatgacaagataagctcagacaatatcgaagattgtcatctcagaaattacatgacttctGCACATTTGTTTTAGATTTATCCTTATAGGTACAGGCACTTTTCTTATTGGTCATAACTG-TGAATTGATATGGTAATTCTTTTGATATAGGAGAATGAACAGATCAAGGAAATTTTCTTCAGTGGTTTTGTATTTTTGTTCCT-----AA------------------------AATGCCATTTAATTTTCACAAGGTCCTTCCTGGTAGGACTCTGGGATGGGGGGAAAATGTGGCCCTTGGAGCCTTCCCCAGTCCATAGTTCTAGAATATGACAGCTCTGAACAGCCAGAAAACAGAAAAACCCATATATCCTCAGCTCAATCATGTCTTGAAACATTTCCAGAGTCCAGTC---ATTTTGTCTCATCAACAAAACAAGATGAGTCCAGCGTATAACAAGATGAGCCCAGTGATAGCTTTATCCGAGTTTATGAGTGAGCCTTCTCGTCCTTT i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11302889 606 + 104110932 ATATCATTCT-TG------tttttttCGTATAATTATGAGTTCATCATTAGGGTGATGAGAGCCAATGGAGTA---GTATGACTTTGGGTGAGTCACTGTACTTCTTTGGgcttcatttttctaatttataaaatgacaaGATAAGCTCAGACAATATCGAAGATTGTCATCTCAGAAATTACATGACTCCTGCACATTTGTTTTAGATTTATCCTTATAGGTACAGGTACTTTTCTTATTGGTCATAACTG-TGAATTGATATGGTAATTCTTTTGATATAGGAGAATGAACAGATCAAGGAAATTTTCTTCagtggttttgtatttttgttcct-----aa------------------------aatgccatttaattttcacaaggtCCTTCCTGGTAGGACTCTGGGATGGGGGGAAAATGTGGCCCTTGGAGCCTTCCCCAGTCCATACTTCTAGAATATGACAGCTCTGAAcagccagaaaacagaaaaacccatATATCCTCAGCTCAATCATGTCTTGAAACATTTCCAGAGTCCAGCC---ATTTTGTCTCATCAACAAAACAAGATGAGTCCAGCGTATAACAAGATGAGCCCAGTGATAGCTTTATCCGAGTTTATGAGTGagccttctcttccttt i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34401452 606 + 128595539 ATATCATTCT-TG------TTTTTTTCGTATAATTATGAGTTCATCATTAGGGTGATGAGAGCCAATGGAGTA---gtgtgactttgggtgagtcactgtacttctttgggcttcatttttctaatttataaaatgacaagataagctcagacaatatcgaagattatcatctcagaaattacatgacttctGCACATTTGTTTTAGATTTATCCTTATAGGTACAGGTACTTTTCTTATTGGTCATAACTG-TGAATTGATATGGTAATTCTTTTGATATAGGAGAATGAACAGATCAAGGAAATTTTCTTCAGTGGTTTTGTATTTTTGTTCCT-----GA------------------------AATGCCATTTAATTTTCACAAGATCCTTCCTGGTAGGACTCTGGGATGGGGGGAAAATGTGGCTATTGGAGCCTTCCCCAGTCCATAGTTCTAGAATATGACAGCTCTGAACAGCCAGAAAACAGAAAAACCCATATATCCTCAGCTCAATCATGTCTTGAAACATTTCCAGAGTCCAGTC---ATTTTGTCTCATCAACAAAACAAGATGAGTCCAGCGTATAACAAGATGAGCCCCGTGATAGCTTTATCCAAGTTTATGAGTGAGTCTTCTCTTCCTTT i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87887608 592 - 158406734 ATATCATTCTGGG------TTTTTTTCTTATAAGTGTGAGTTAATCATTAGGGTGAAAAGAGCTAATGGAGtagttgtataactttgggtgagtcactgtacttctctgagcttcatttttctaattgataaa---acaagataagctgagacaatatcaaag-ttgtcaactcagaaattacatgattTCTGCCCATTTGTTTTAGATTTATCCTTATACATACATGTACTTTTCTTATTGGTTATGACTA-TGAATTGATATAGTAATTCTTTTAATATGGGAAAATGAA----------AAATTTGTTTCAGTGCTTTTGTATTTTTGTCCCT------A------------------------ACTGCCATTTAATTTTCACAAGGTCCCTCCTGGTAGGACTCTGGGATGGGGAGAAAG-ATGGCTGTTGGAACCTTCTCTAGTCCACAGTTCCAAAATAAGACAGCTCCGAACAGCCAGAAAACAGAAAAGCCCATATA--CTCAGCTCAGTCATGTCTTGAAACATTTCCAGAGTCCAGGC---ACTTTGTTTCATCAACAAAACAAGATGACCCCAGGATATAACAAGATGAGCCCAGTGTTATCTTTATCCAAGTTTATGAGTGAGCCTTCTCTTCTTTT i calJac3.chr6 C 0 C 0 s canFam3.chr19 50645416 584 + 53741614 TAATCATTCT-GAAGAGTTTTTTTTTCTTGCAATTATGATTTAATCATTTGGGCAATGAGAGCTAAAGGTAGGgttgtgtgaccttgggcaattcactatacttctc-gtgcttcattttcctgatttgtgcaatgacaagatgagcccacattatcttgcaggttgtcagctcagaaatcgcatgggttatacatataTTTCTTAGATCTA-CATTGTGAGTATAGA--------GTATTGGTTGTGAGTACTCAACTGATA---TAATTCTTTT-ATCTAAAATAATGATCCGAGTGGGGAGACCTTTGTGAGTGATCTT-CCTTTTTCTTCCT-----AA------------------------CACCCTGTTCAGTTCCCACACAGGGCCTCCTGGCTGTACCCTGGGATAAGGGGAAGAGAT--------------------GCCCTCATTTCCAGAAAATAACAGGCCCAGACAGCAGGGAAACAGAAGAACCCATATTTCTCCAGCTCTGTCATGTCTCGAAACATTTTCAGAGCCCAGGCAATACTTTGTTTAGTCTGCAAAATAAGATGAGACCACCCAGTGATGAGATGAGCCTAGAGTTCACGTTCTCTGGGTTTATTAGTGAGCTTCCCCTTGCCTT i canFam3.chr19 C 0 I 4 e mm10.chr2 49734084 24 + 182113224 I a score=2267642.000000 s hg38.chr2_GL582966v2_alt 58970 755 + 96131 CATGTACTGGTGGCACTGAACtgtcaacagaagtatgatgaggtccatacatttggaaaggagagctttatttttcataatgggttgcagcctgcagggtggccactcttacaggttgggaagtgtagcctttggccagaagccagaaagaagcactttgaggatgggaagaat--gacagggacttatgtttttcacagggt------ggccaaataaacttattcaacaggttacaggaggagctatgaagattcatgaaggagtggcatgtgcatgtgtagtagga-aaacatgtatgcaacatgggtcccatgttcacttttatttggagacttaacatttaaatgtattataattaggccctgtacatcaaagggtgaagcagaggatatgaagg----ctgtgtgcagccttagtagcctggccagaaccagaaccacttcatggttggtggtctctcgttggggaaggaactttggttggtggttgtgttgaaattgcaaaagagaggggcaggggcaggctgtggt---tatcagcagtgaagcagtggagtgaatatttcaaaagggctggcttctgtttaacccttggggaagaaagcctaatgctgattggcgagggagggtgtatgaccaggcgtttccaacttcccaatctgtcctgggctggaactcggtatttaac----atttctctggggtctccttggccacgagggggtctgttcagtcattcggggggttaggattttatttgtatttctTGGGG s panTro4.chr2B 153171771 755 + 247518478 CATGTACTGGTGGCACTGAACtgtcaacagaagtatgatgaggtccatacatttggaaaggagagctttatttttcataatgggttgcagcctgcagggtggccattcttacaggttgggaagtgtagcctttggccagaagccagaaagaaccactttgaggatgggaagaat--gacagggacttatgtttttcacagggt------ggccaaataaacttattcaacaggttacaggaggagctatgaagattcatgaaggagtggcatgtgcatgtgtagtagga-aaacatgtatttaacatgggtcccatgttcactttgatttggagacttaacatttaaatgtattataattaggacctgtacatcaaagggtgaagcagaggacatgaagg----ctgtgtgcagccttagtagcctggccagaaccagaaccacttcgtggttggtggtctctcgttggggagggaactttggttggtggttgtgttgaaattgcaaaagagaggggcaggggcaggctgtggt---tatcagcagtgaagcagtggagtgaatatttcaaaagggctggcttctgtttaacccttggggaagaaagcctaatgacgattggcgagggagggtgtatgaccaggcgtttccaacttcccaatctgtcctgggctggaactcggtatttaac----atttctctggggtctccttggccacgagggggtctgttcagtcattcggggggttaggattttatttatatttctTGGGG i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38378157 757 + 135000294 CATGTACTGGTGGCACTGAACtgtcaacagaagtatgatgaggtccatacatttggaaaggagagctttatttttcataatgggttgcagcctgcagggtggccattcttacaggttgggaagtgtagtctttggccagaagccagaaataagcactttgaggatgggaagaataagacagggacttatgtttttcacagggt------ggccaaataaacttattcaacaggttacaggaggagctgtgaagattcatgaaggagtggcaagtgcatgtgtagtagga-aaacatgtacgcaacatgggtcccatgttcactttgatttggagacttaacatttaaatgtattataataaggccctgtacatcaaagagtgaagcagaggacatgaagg----ctgtgtgcagccttagtagcctggccagaaccagaaccacttcgtggttgatggtctcttgttgaggaaggaactttggttggtggttgtgttgaaattgcaaaagagaggggcaggggcaggccgtggt---tatcagcggtgaagcagtggagtgaatatttcaaaagggctggcttctgtttaacccttggggaagaaagcctaatgccgattggcgagggagggtgtatgaccaggcgtttccaacttcccaatctgtcctggcctggaacttggtatttaac----atttctctggagtctccttggccacgagggggtctgttcagtcatttggggggttaggattttatctgtatttctTGGGG i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82330776 755 - 85365473 CATGTACTGGTGGCACTGAACtgtcaacagaagtatgat-aggtccatacatttggaaaggagagctttatttttcataaagggttgcagcctgcagggtggccattctgacaggttgggaagtgtagcctttggccagaagccagaaataagcactttgaggatgggaagaataagacagggatttatgtttttcacagggt------ggccaaataaacttattcaacaggttacgggaggagctatgaatattcgtgaaggagtggcatgtgcatgtgtagtagga-aaacatgtatgcaacatgggtcccatgttcactttgatttggagacttaacatttaaatgtattataattaggccctgtacatcaaagggtgaagcagaggacatgaagg----ctgtgtgcagccttagtggcctggccagaaccagaaccacttcgtagttggtggtctcttgttggggaaggaactttggttggtggttgtgttgaaa-tgcaaaagagaggggcaggggcaggctgtggt---tatcagcagtgaagcagtggagtgaatatttcaaaagagctgacttctgtttaacccttggggaagaaagcctaatgccgatcggcgagggagggtgtatgaccaggcgtttccaacttcccaatctgtcatggcctggaactcggtatttaac----atttctctggggtctccttggccacgagggggtctgttcagtcatttggggggttaggattttattcgtgtttctTGGGG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11942195 763 + 106825570 CATGTACTGGTGGCACTGAACtgtcaagagaagtatgatgaggtccatacatttggaaaggagagctttatttttcataaagggttgcaggctgcaggatgaccattcttacaggttgggaagtgtaacctctggccagaagccagaaataagcactttgagggtggaaagaataagaaagggatttatgtttttcacagggt------ggccaaatatacttattcaacagattacaggaggagttatgaagattcatgaaggagtggcatgtgcatgtatagtagga-aaacatgtatgcaacatgggt-ccatgttcactttggtttagagacttaacatttaaatgtattataattaggccctatacatcaaagggtaaagcagaggacatgaaggctctctgtgtgcagccttagtagcctgcccagaaccagaaccacttcgtggttggtggtctcttgttggggaaggaacactggttggtggttgtgttgaaattgcaaaagagaagggcaggggcaggccgtggttgatatcagcagtgaagcagtggagtgaatatttcaaaagggctggcttctgtttaaaccttggggaagaaggcctactgccgattggcgagggagggggtgtgaccaggcgtttccaatttcacaatctgtcatggcctggaactcggtatttaac----attcctctggggtctccttggccacgagggggtgtgttcagtcatttgggggtttaggattttatttttatttctTGGGG i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37646270 763 + 132586672 CATGTACTGGTGGCCCTGAACtgtcaagagaagtatgatgaggtccatacatttggaaaggagagctttatttttcataaagggttgcaggctgcaggatgaccattcttacaggttgggaagtgtaacctctggccagaagccagaaataagcactttgagggtggaaagaataagaaagggatttatgtttttcacagggt------ggccaaatatacttattcaacagattacaggaggagttatgaagattcatgaaggagtggcatgtgcatgtatagtagga-aaacatgtatgcaacatgggt-ccatgttcactttggtttagagacttaacatttaaatgtattataattaggccctatacatcaaagggtaaagcagaggacatgaaggctctctgtgtgcagccttagtagcctgcccagaaccagaaccacttcgtggttggtggtctcttgttggggaaggaacactggttggtggttgtgttgaaattgcaaaagagaagggcaggggcaggccgtggttgatatcagcagtgaagcagtggagtgaatatttcaaaagggctggcttctgtttaaaccttggggaagaaggcctactgccgattggcgagggagggggtgtgaccaggcgtttccaatttcacaatctgtcatggcctggaactcggtatttaac----attcctctggggtctccttggccacgagggggtgtgttcagtcatttgggggtttaggattttatttttatttctTGGGG i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11303495 763 + 104110932 catgTACTGGTGACACTGAACTGTCAAGAGAAGTATGATGAGGCCCAtacatttggaaaggagagctttatttttcataacGGGTTGCAGGCTGCAGGATGACCATTCTTACAGGTTGGGAAGTGTAACCTCTGGCCAGAAGCCAGAATAAAGCACTTTGAGGGTGGAAAGAATAAGAAAGGGATTTATGTTTTTCACAGGGT------GGCCAAATAGACTTATTCAACAGGTTACAGGAGGAGTTATGAAGATTCATGAAGGAGTGGCATGTGCATGTATAGTAGGA-AAACATGTATGCAACATGGGT-CCATGTTCACTTTGGTTtagagacttaacatttaaatgtattataattaggcCCTATACATCAAAGGGTGAAGCAGAGGACATGAAGGCTCTCTGTGTGCAGCCTTAGTAGCCTGCCCAGAACCAGAACCACTTCGTGGTTGGTGGTCTCTTGTTGGGGAAGGAACACTGGTTGGTGGTTGTGTTGAAATTGCAAAAGAGAAGGGCAGGGGCAGGCCGTGGTTGATATCAGCAGTGAAGCAGTGGAGTGAATATTTCAAAAGGGCTGGCTTCTGTTTAACCCTTGGGGAAGAAGGCCTACTGCCGATTGGCGAGGGAGGGGGTATGACCAGGCGTTTCCAATTTCACAATCTGTCATGGCCTGGAACTCGGTATTTAAC----ATTCCTCTGGGGTCTCCTTGGCCACGAGGGGGTGTGTTCAGTCATTTGGGggtttaggattttatttttatttcttgggg i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34402058 763 + 128595539 CATGTACTGGTGGCACTGAACtgtcaagagaagtatgatgaggtccatacatttggaaaggagagctttatttttcataaagggttgcaggctgcaggatgatcattcttacaggttgggaagtgtaacctctggccagaagccagaaataagcactttgagggtgggaagaataagaaagggatttatgtttttcacagggt------ggccgaatatacttattcaacaggttacaggaggagttatgaagattcatgaaggagtggcatgtgcgcgtgtagtagga-aaacatgtatgcaacatgagt-ccatgttcactttggtttagagacttaacatttaaatgtattataattaggccctatacatcaaagagtgaagcagaggacatgaaggctctctgcgtgcagccttagtagcctggccagaaccagagccacttcgtggttggtggtctcttgttggggaaggaacactggttggtggttgtgttgaaattgcaaaagagaagggcaggggcaggccgtggttgatatcagcggtgaagcagtggagtgaatatttcaaaagggctggcttctgtttaacccttggggaagaaagcctactgccgattggtgagggaaggggtatgaccaggcgtttccaatttcacaatctgtcatggcctggaactcggtatttaac----attcctctggggtctccttggccacgagggggtgtgttcagtcatttgggggtttaggattttatttttatttctTGGGG i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87888200 773 - 158406734 TGTGTACTGGTGGCACTGGACtgtcagcagaagtatggtgagatccatacatttggaaaggagagctctatttctcataaagggttgcagtctgcagggtgaccattcttacaggctgggaagtgtggcctctgtccagaagccacaaataagcactttgaggatgggaagaataaggcagggattaatactgaatggggggtggggtggggcaaatgtacatatgcaacaggttacaggaggagctgtgaagattcacaaaggagtggtatgtgcatgcgaagcaggataaacatgtctgcaacatgggtcccatgttcactttggtctggagacttaacatttaaatatattacaattaggccctatacttcaaagggtgaagcagaggacatgaaggctctctgtgtgcagccttagtagcctggcgagaaccagaaccacttcgtggttggtggtctcttgttggggaaggaatgctggttggtggttgtgttgaaa-tacaaaaaagaggggcaggggcgggtcatggttgatatcagcagtgaagcagtggagcgaatatttcaaaagggctggcttctgtttaattattggggaagaaagcctgatggcaattagcgaaggagcaggtacgaccaggcgtttccaacttccccatctgtcacagcctagaactcggtatttaacatttatttctctggggtcccgttggccaagagggggtctgttcagtcattt-ggggtttaggattttatttgtacttctTGGTG i calJac3.chr6 C 0 C 0 e canFam3.chr19 50646000 4 + 53741614 I e mm10.chr2 49734084 24 + 182113224 I a score=334917.000000 s hg38.chr2_GL582966v2_alt 59725 105 + 96131 CCTACCTTACCTTGCTACCTTCAAAGGA---ATTTAGCCAGAACCT--GAATAG-AAGTTGAGGTAGAGTAAATGAACTGAATTGGACTGGCTGCCTTATTTTCTTTTGGC s panTro4.chr2B 153172526 101 + 247518478 CCTACCTTACCTTGCTACCTTCAAAGGA---ATTTAGCCAGAAACT--GAATAG-AAGTTGAGGTAGAGTCAATGAACTGAATTGGA----CTGCCTTATTTTCTTTTGGC i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38378914 105 + 135000294 CCTACCTTACCTTGCTACCTTCAAAGGA---ATTTAGCCAGAAACT--GAATAG-AAGTTGAGGTAGAGTAAATGAACTGAATTGGACTGGCTGCCTTATTTTCTTTTGGT i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82331531 105 - 85365473 CCTACCTTACCTTGCTACCTTCAAAGGA---ATTTAGCCAGAAACT--GAATAA-AAGTTGTGGTAGAGTAAATGAACTGAATTGGACTGGCTGCCTTATTTTCTTTTGGC i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11942958 106 + 106825570 CCTACCTTACCTCACTACCTTCAAAGGA---ATCTAGCCAGAAACT--GAATAGAAAGTTGAGGTAGAGTAAATGAACTGAATTGGACTCACTGCCTAATTTTCATTTGGC i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37647033 106 + 132586672 CCTACCTTACCTCACTACCTTCAAAGGA---ATCTAGCCAGAAACT--Gaatagaaagttgaggtagagtaaatgaactgaattggactcactgcctaattttcatttggc i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11304258 106 + 104110932 CCTACCTTACCTCACTACCTTCAAAGGA---ATCTAGCCAGAAACT--GAATAGAAAGTTGAGGTAGAGTAAATGAACTGAATTGGACTCACTGCCTAATTTTCATTTGGC i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34402821 106 + 128595539 CCTACCTTACCTCGCTACCTTCAAAGGA---ATCTCGCCAGAAACT--Gaatagaaagttgaggtagagtaaatgaactgaattggactcactgcctaattttcgtttggc i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87888973 106 - 158406734 CCTATCTTACCTTGCCACTTTCAAAGGA---ATCTAGCCAGAAACT--GAATAGAAAGTTGAGGCAGAGTAAATGAACTGAATTGGACTGGCTGCCTACGTTTCTTTTGGC i calJac3.chr6 C 0 C 0 s canFam3.chr19 50646004 109 + 53741614 CCTATGTCACCAGGCTTTCTTTATAGCAGAGATTT--CCAGAAGCCTAGAATAGAAACTTGAGGTGGAGTAAATAAAATTGATTAGATTAGCGGCCAGATTTTCTTTCGAC i canFam3.chr19 I 4 I 352 e mm10.chr2 49734084 24 + 182113224 I a score=23792.000000 s hg38.chr2_GL582966v2_alt 59830 24 + 96131 CCACACTGACTTCTTTTTGTCCCA s panTro4.chr2B 153172627 24 + 247518478 CCACACTGACTTCTTTTTGTCCCA i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38379019 24 + 135000294 CCACACTGACTTCTTTTTGTCCCA i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82331636 24 - 85365473 CCACACTGACTTCTTTTTGTCCCA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11943064 8 + 106825570 CCACACTG---------------- i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37647139 8 + 132586672 ccacactg---------------- i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11304364 8 + 104110932 CCACACTG---------------- i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34402927 8 + 128595539 ccacactg---------------- i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87889079 24 - 158406734 CCACATTGACTTCTCTTTGTCCCA i calJac3.chr6 C 0 C 0 e canFam3.chr19 50646113 352 + 53741614 I e mm10.chr2 49734084 24 + 182113224 I a score=296519.000000 s hg38.chr2_GL582966v2_alt 59854 95 + 96131 TTCTAACTTTTATGACTTTAAATGTGAACATGCACCTTACTTACCTTGGGTGTGGCCTAGGAATGGCAGTAGTTCATCATCGTGCACAGCCACTC s panTro4.chr2B 153172651 95 + 247518478 TTCTAACTTTTAGGACTTTAAATGTGAACATGCACCTTACTTACCTTGGGTGTGGCCTAGGAATGGCAGTAGTTCATCATCGTGCACAGCCACTC i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38379043 93 + 135000294 TTCTAACTTTTAGGCCTTTAAATGTGAACATGCACCTTACTTACCTTGGGTGTGGCT--AGAATGGCAATAGTTCATCATCTTGCACAGCCACTC i ponAbe2.chr2b C 0 I 198 s nomLeu3.chr20 82331660 95 - 85365473 TTCTAACTTTTAGGCCTTTAAATGTGAACATGCACCTTACTTACCTTGGGTGTGGCCTAGGAATGGCAGTAGTTCATTATCTTGCACAGCCACTC i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11943072 90 + 106825570 -----ACTTGTAGGCCTTTAGATGTGAACATGCACCTTACTTACCTTGGGTGTGGTCTAGGAATGGCAGTAGTTCATCATCTTGCACAGCCACTC i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37647147 90 + 132586672 -----acttgtaggccttTAGATGTGAACATGCACCTTACTTACCTTGGGTGTGGTCTAGGAATGGCAGTAGTTCATCATCTTGCACAGCCACTC i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11304372 90 + 104110932 -----ACTTGTAGGCCTTTAGATGTGAACATGCACCTTACTTACCTTGGGTGTGGTCTAGGAATGGCAGTAGTTCATCATCTTGCACAGCCACTC i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34402935 90 + 128595539 -----acttgtaggccttTAAATGTGAACATGCACCTTACTGACCTTGGGTGTGGTCTAGGAATGGCAGTAGTTCATCATCTTGCACAGCCACTC i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87889103 95 - 158406734 TTCTAACTTTTAGGCTTTTAAATGTGAACAAGCACCTTATTTACCTTGGGTGTGGACTAGAAATGGCAGTAGTTCGTCATCTTGCGCGGCCACTG i calJac3.chr6 C 0 C 0 s canFam3.chr19 50646465 84 + 53741614 TTCTGACTCTTAGATGTTAGAATGTGACTGGTCACCTCACTTACCTTTTACTTGGCTTAGAAATGG-----------TACCTTGCACAGTGACTC i canFam3.chr19 I 352 C 0 e mm10.chr2 49734084 24 + 182113224 I a score=684742.000000 s hg38.chr2_GL582966v2_alt 59949 231 + 96131 CATGCTTGAGAGAT-GGGGGTAGGGAGGTGGAGAGGTAGGGATGACTCCCTGTATAGGCA--GGTAGAAGCAGCAGGCCACATC----TTCCAT-AGATTTCATGACGGTGTGGTCTTTTCTCCTGGGTTGGTCATTGATACTGGATCCCATGGTCTAGTATGTACTACTGGGGGCATTATCAGACTCTGGGACAGTTATAAATAAAATTTCAGCAGCAAAC---TGA--TTTTTTTTTTTTTT- s panTro4.chr2B 153172746 231 + 247518478 CATGCTTGAGAGAT--GGGGTAGGGAGGTGGAGAGGTAGGGACGACT-CCTGTATAGGCA--GGTAGAAGCAGCAGGCCACATC----TTCCAT-AGATTTCATGACGGTGTGGTCTTTTCTCCTGGGTTGGTCATTGATACTGGATCCCATGGTCTAGTATGTACTACTGGGGGCATTATCAGACTCTGGGACAGTTATAAATAAAATTTCAGCAGCAAAC---TGatttttttttttttttt- i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38379334 230 + 135000294 TATGCTTGAGAGAT--GGGGTAGGGAGGTGTAGAGGTAGGGGTGACTCCCTGTATAGGCA--GGTAGAAGCAGCAGGCCACATC----TTCCAT-AGATTTCATGACGGTGTGGTCTTTTCTCCTGCGTTGGTCATTGATACTGGATCCCGTGGTCTAGTATGTACTACTGGGGGCATTATCAGACTCT-GGACAGTTATAAATAAAATTTCAGCAGCAAAC---TGa-ttttttttttttttt- i ponAbe2.chr2b I 198 C 0 s nomLeu3.chr20 82331755 225 - 85365473 CATGCTT--GAGAT--GGGGTAGGGAGGTGGAGAGGTAGGGGCGACTCCCTGTATAGGCA--GGTAGAAGCAGCAGGCCACATC----TTCCAT-AGATTTCATGATGGTGTGGTCTTTTCTCCTGGGCTGGTCATTGATACTGGATCCCATGGTCTAGTATGTACTACCGGGGGCATTATCAGACTCTGAGACAGTTATAAATAAAATTTCAGCAGCAAAC---TGA-----TTTTTTTTTTT- i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11943162 228 + 106825570 CATGCTTGAGAGAC--GGGGTAGGGAGGTGGAGAGGTGGGGGCGACTCCCTGTATAGGCA--GGTAGAAGCAGCAGGCCACATC----TTCCAA-ACATTTCATGACGGTGCGGTCTTTTCTCCTGGGTTGGTCATTGATACTGGATCCCATGGTCTAGTATGTACCTCT-GGGGCATTATCAGACTCTGGGACAGTTATAAATAACATTTCAGCA-CAAAC---TGA-TTA-TTTTTTTTTTT- i rheMac3.chr12 C 0 I 1 s macFas5.chr12 37647237 229 + 132586672 CATGCTTGAGAGAC--GGGGTAGGGAGGTGGAGAGGTGGGGGCGACTCCCTGTATAGGCA--GGTAGAAGCAGCAGGCCACATC----TTCCAA-ACATTTCATGACGGTGCGGTCTTTTCTCCTGGGTTGGTCATTGATACTGGATCCCATGGTCTAGTATGTACCTCT-GGGGCATTATCAGACTCTGGGACAGTTATAAATAACATTTCAGCA-CAAAC---TGA-TTATTTTTTTTTTTT- i macFas5.chr12 C 0 I 1 s papAnu2.chr12 11304462 220 + 104110932 CATGCTTGAGAGAC--GGGGTAGGGAGGTGGAGAGGTACGGGCGACTCCCTGTATAGGCA--GGTAGAAGCAGCAGGCCACATT----TTCCA-------TCATGACGGTGCGGTCTTTTCTCCTGGGTTGGTCATTGATACTGGATCCCATGGTCTAGTATGTACTACT-GGGGCATTATCAGACTCTGGGACAGTTATAAATAACATTTCAGca-caaac---tga-t---ttttttttttt- i papAnu2.chr12 C 0 I 1 s chlSab2.chr10 34403025 225 + 128595539 CATGCTTGAGAGAC--GGGGTAGGGAGGTGGAGAGGTGGGGGCGACTCCCTGTATAGGCA--GGTAGAAGCAGCAGGCCACATC----TTCCAT-ACATTTCATGACGGTGTGGTCTTTTCTCGTGGGTTGGTCATTGATACAGGATCCCATGGTCTAGTATGCACTACT-GGGGCATTATCAGACTCTGGGACAGTTATAAATAACATTTCAACA-CAAAC---TGA-----TTTTTTTTTTT- i chlSab2.chr10 C 0 I 271 s calJac3.chr6 87889198 228 - 158406734 CATGCTTGAGAGAC--GGAGTAGGGAGGTAGAGAGGTGGGGGCGACTCCCTGTATAGGCA--GGTAGAAGCAGCTGGCCACATC----TTCCATAAGATTTCATGACGGTGCAGTCTTTTCTCCTGGGTTAGTCATTGATACTGGATTCCATGATCTGGTATGTACTGCTGGGGGCATTATCAGACTCTGGGACAGTTATAAATAGCATTTCAGCTGATAGC---TGA-----TTATTTTTTTG- i calJac3.chr6 C 0 C 0 s canFam3.chr19 50646549 213 + 53741614 CAGGCTCTAGAGACCCGGGGTGGGTGGGTGT-------GGGGTGAC-CGCTGTATAGATAGGGGCAGGTGGGGCAGGCAGCATCAGCATTCCCA-------CGTGAAG--GCAGCCTTTCCTCCTGGATTAGTCATCTCTCCTGGATCACACAGCCCAGTGTGTACTGTTAGAGTTAT----------GGGGAGAGTTATAAATAACATTTTAGCAACAAACTCTTGA-----GTCTTCTTTTCG i canFam3.chr19 C 0 C 0 e mm10.chr2 49734084 24 + 182113224 I a score=1715884.000000 s hg38.chr2_GL582966v2_alt 60180 507 + 96131 AAATAACAGTGTCCTGA----AATTACTGGAAACTTTTGAACATGAAACCACTAAATATATGAAC-TTTGTAGTGGTAAG-----------------------------------AAACCTCACAGTTAAAACCCCTTTGTTAGGGGTATTGTTTTTATCCATCAGGCA------------------------CAAACTCAAAATCTCCTTTTAGATCTCCAAGGACAGGAACTGGCTTCAGAAGTTATAGCTCTGGTTTGGGAGAAGAAATGTCTAGCTCTTATTTTGGAGGAAGCCCATCTTTATACATATCTATATTTTTACTCTTCCTCAATTTACATGGGATCTAGGCATAAAAGACAAAG----------TGTCCTACTTT------GACAGACCTGGAAAAGAAGAGG-AATTCATTCTCTTCCCAGGGTGCCAGAGCTTCTGGCTCAGCAGCGTTTTCCTACCAGGAGCTGGTGTAGGCTGTGAATTCCATGTGGAAGAGATGGGTTTTACTTTGTCTTTCTGCAGAGGCTGGACA-AGATGTAAGA-TACACCTGGTCAGGCTCAGGAAG---------GTGTTTCTCAT s panTro4.chr2B 153172977 507 + 247518478 aaataaCAGTGTCCTGA----AATTACTGGAAACTTTTGAACATGAAACCACTAAATATATGAAC-TTTGTAGTGGTAAG-----------------------------------AAACCTCACAGTTAAAACCCTTTTGTTAGGGGTATTGTTTTTATCCATCAGGCA------------------------CAAACTCAAAATCTCCTTTTAGATCTCCAAGGACAGGAACTGGCTTCAGAAGTTATAGCTCTGGTTTGGGAGAAGAAATGTCTAGCTCTCATTTTGGAGGAAGCCCATCTTTATACATATCTATATTTTTACTCTTCCTCAATTTACATGGGATCTAGGCATAAAAGACAAAG----------TGTCCTACTTT------GACAGACCTGGAAAAGAAGAGG-GATTCATTCTCTTCCCAGGGTGCCAGAGCTTCTGGCTCAGCAGCATTTTCCTACCAGGAGCTGGTGTAGGCTGTGAATTCCATGTGGAAGAGATGGGTTTTACTTTGTCTTTCTGCAGAAGCTGGACA-AGATGTAAGA-TACACCTGGTCAGGCTCAGGAAG---------GTGTTTCTCAT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38379564 507 + 135000294 aaataaCAGTGTCCTGA----AATTACTGGAAACTTTTGAACATGAAACCGCTAAATATATGAAC-TTTGTAGTGGTAAG-----------------------------------AAACCTCACAGTTAAAACCCCTTTGTTAGGGGTATTGTTTTTATCCATCGGGCA------------------------CAAATTCAAAATCTCCTTTTAGATCTCCGAGGACAAGAACTGGCTTCAGAAGTTATAGCTCTGGTTTGGGAGAAGAAATGTCTAGCTCTCATTTTGGAGGAAGCGTATCTATATACATATCTATATTTTTACTCTTCCTCAATTTACATGGGATCTAGGCATAAAAGACAAAG----------TGTCCTACTTT------GACAGACCTGGAAAAGAAGAGG-GATTCATTCTTTTCCCAGGGTGCCAATGCTGCTGGCTCAGCAGCGTTTTCCTACCAGGAGCTGGTGTAGGCTGTGAATTCCATGTGGAAAAGATGGGTTTTACTTTGTCTTTCTGCAGAAACTGGACA-AGATGTAAGA-TACACCTGGTCAGGCTCAGGAAG---------GTGTTTCTCAT i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82331980 508 - 85365473 AAATAACAGTGTCCTGA----AATTACTGGAAACTTTTGAACATGAAACCGCTAAATATATGAAC-TTTGTAGTGGTAAG-----------------------------------AAATCTCACAGTTAAAACCCCTTTGTTAGGGGTATTGTTTTTATCCATCAGGCA------------------------CAAACTCAAAATCTCCTTTTAGATCTCCGAGGATAAGAACTGGCTTCAGAAGTTATAGCTCTGGTTTGGGAGAAGAAATGTCTAGCTCTCATTTTGGAGGAAGCCCATCTTTATACATATCTATATTTTTACTCTTCCTCAATTTGCATGGGATCTAGGCATAAAAGACAAAG----------TGTCCTACTTT------GACAGACCTGGAAAAGAAGAGG-GATTCATTCTCTTCACAGGGTGCCAGAACTGCTGGCTCAGCAGCGTTTTCCTACCAGGAGCTGGTGTAGGCTGTGAATTCCATGTGGAAGAGATGGGTTTTACTTTGTCTTTCTGCAGAAGCTGGACA-AGATGTAAGATTACACCAGGTCAGGCTCAGGAAG---------GTGTTTCTCAT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11943391 507 + 106825570 AAATAACAGTGTCCTAA----AATTACTGGAAACCTTTGAACATGAAACCACTAAATATATGAAC-TCTGTAGTGGTAAG-----------------------------------AAACCTCACAGTTAAAAACCATTTGTTAGGGGTATTGTTTTTATCCATCAGGCA------------------------CAAACTCAAAATCTCCTTTTAGATCTCCAAGGACAAGAACTGGCTTCAGAAGTTATAGCTCTGGTTTGGAAGAAGAAATGTCTAGCTCTCATTTTGGAGGAAGCCCATCTTTATACATATCTATATTTTTACTCTTCCTCAATTTACATGGGATCTGGGCATAAAAGACAAAG----------TGTCCTACTTT------AACAGACCTGGAAAAGAAGAGG-GATTCATTCTCTTCCCAGGGTGCCAGAGCTGCTGGCTTAGCAGCGTTTTCCTACCAGGAGCTGGTGTAGGCTGTGAATTCCATGTGGAAGAGATGGATTTTACCTTATCTCTCTGCAGAAACTGGACA-AGATGTAAGA-TACACCTGGTCAGGCTCAGAAAG---------GTGTTTCTCAT i rheMac3.chr12 I 1 C 0 s macFas5.chr12 37647467 507 + 132586672 AAATAACAGTGTCCTAA----AATTACTGGAAACCTTTGAACATGAAACCACTAAATATATGAAC-TCTGTAGTGGTAAG-----------------------------------AAACCTCACAGTTAAAAACCATTTGTTAGGGGTATTGTTTTTATCCATCAGGCA------------------------CAAACTCAAAATCTCCTTTTAGATCTCCAAGGACAAGAACTGGCTTCAGAAGTTATAGCTCTGGTTTGGAAGAAGAAATCTCTAGCTCTCATTTTGGAGGAAGCCCATCTTTATACATATCTATATTTTTACTCTTCCTCAATTTACATGGGATCTGGGCATAAAAGACAAAG----------TGTCCTACTTT------AACAGACCTGGAAAAGAAGAGG-GATTCATTCTCTTCCCAGGGTGCCAGAGCTGCTGGCTTAGCAGCGTTTTCCTACCAGGAGCTGGTGTAGGCTGTGAATTCCATGTGGAAGAGATGGATTTTACCTTATCTCTCTGCAGAAACTGGACA-AGATGTAAGA-TACACCTGGTCAGGCTCAGAAAG---------GTGTTTCTCAT i macFas5.chr12 I 1 C 0 s papAnu2.chr12 11304683 507 + 104110932 aaataacagTGTCCGCA----AATTACTGGAAACCTTTGAACATGAAACCACTAAATATATGAAC-TCTGTAGTGGTAAG-----------------------------------AAACCTCACAGTTAAAAACCATTTGTTAGGGGTATTGTTTTTATCCATCAGGCA------------------------CAAACTCAACATCTCCTTTTAGATCTCCAAGGACAAGAACTGGCTTCAAAAGTTACAGCTCTGGTTTGGAAGAAGAAATGTCTAGCTCTCATTTTGGAGGAAGCCCATCTTTATACATATCTATATTTTTACTCTTCCTCAATTTACATGGGATCTGGGCATAAAAGACAAAG----------TGTCCTACTTT------AACAGACCTGGAAAAGAAGAGG-GATTCATTCTCTTCCCAGGGTGCCAGAGCTGCTGGCTTAGCAGCGTTTTCCTACCAGGAGCTGGTGTAGGCTGTGAATTCCATGTGGAAGAGATGGATTTTACCTTATCTTTCTGCAGAAACTGGACA-AGATGTAAGA-TACACCTGGTCAGGCTCAGAAAG---------GTGTTTCTCGT i papAnu2.chr12 I 1 C 0 s chlSab2.chr10 34403521 507 + 128595539 AAATAACAGTGTCCTAA----AATTACTGGAAACCTTTGAACATGAAACTACTAAATATATGAAC-TCTGTAGTGGTAAG-----------------------------------AAACCTCACAGTTAAAAACCATTTGTTAGGGGTATTGTTTTTATCCATCAGGCA------------------------CAAACTCAAAATCTCCTTTTAGATCTCCAAGGACAAGAACTGGCTTCAGAAGTTATAGCTCTGGTTTGGAAGAAGAAATGTCTAGCTCTCATTTTGGAGGAAGCCCATCTTTATACATATCTATATTTTTACTCTTCCTCAATTTACATGGGATCTGGGCATAAAAGACAAAG----------TGTCCTACTTT------AACAGACCTGGAAAAGAAGATG-GATTCATTCTCTTCCCAGGGTGCCAGAGCTGCTGGCTTAGCAGCGTTTTCCTACCAGGATCTGGTGTAGGCTGTGAATTCCATGTGGAAGAGATGGATTTTACCTTATCTTTCTGCAGAAACTGGACA-AGATGTAAGA-TACACCTGGTCAGGCTCAGAAAG---------GTGTTTCTCAT i chlSab2.chr10 I 271 C 0 s calJac3.chr6 87889426 481 - 158406734 AAATAGCGGTGTCCTGA----AATTACTGGAAACTTTTGAACATGAAACCGCTAAATATATGAACTTCTGCAGTGGTAAG-----------------------------------AAACCTCACAGTTGAAAGCCAT------------TTGTTTTTATCTATCAGGCA------------------------CAAACTCAAAATCTCCTTTTAGATCTCCGAGGACAAGAATTGGCTTCAGAAGTTATAGCTCTGGTTTGGGAGGAGAAATGTCTAGCTCTCATTTTGGAGAAAGCCCATCTTTATACATATCTGTATTTTTACTCTTCCTCAATTTACATGGGATCTGGGCATAAAAGACCAAG----------TGTCCTACTTT------GACAGACCTGGAAAAGAAGGAG-GATTCATTCTCTTCCCAGGGTGCCAGAACTGCTGGCTCAGCAGCGTTTTCCTACCAGGAGCTGATGTAGGCTGTG------------------------TTCCTTTATCTTTCTGCAGAAGCTAGACA-AGATGTGAGA-TCTACCTGGTCAGGTTCAGGAAACTCAGGAGCATATTTCTCTT i calJac3.chr6 C 0 C 0 s canFam3.chr19 50646762 580 + 53741614 AAATAACAATGTACTGACTGGGATTATTGAAAAA-TTTGAAT-TTATGTGTCTGAATATATGAAC-TCTTAAGTAGTTAGGACAAGACAACCCAGAACAAAATCAACAGAAAAACAAACCTTATAGT--AAAACCATTTGTTTGGAGTACTGTcccccccccccccgccctccccctccaccccggccccAATCAGATTCACAATATCCTCTTAGACTTCCTAGGATAAGAGCAGGCTCCAGAAGTTATGGTTCTGGTTTGGAGGGAAAAAAGTCTAGCTTTCATTTTGGAGGAAGCCCACTGCTGTGTATA-CTA---TTGTACTCTTCCCCAGTGCGCATGGGACCTGGGCATGGAGTACGTGGTCCCATTGTCTGTCTTCCTTGTCTGAAGACAGAACTGGAGAGGAAGGGGCTGTTTGTTCCCTTCCCCAAATGCCCTA-TTGTTGGTTCAGAGGTGTTTTCCCACCAGGAGCTGGTGTAGGCTGTGAACCCCACATGAAAGAGATGGGTGTTCATTTACCTTTCTACAGAAGCTGGACAGATATATAGGA-CCTGTGTGGTGAGGCTAAAAGAA--------TGAGCTTCTCCT i canFam3.chr19 C 0 C 0 e mm10.chr2 49734084 24 + 182113224 I a score=732483.000000 s hg38.chr2_GL582966v2_alt 60687 243 + 96131 CCTTCTCCTACACTGGACTAAAGACAGTGGCAGAACAC----ACTCAACTTAAAGATTGCATGCTTTTCTCACCCAGTGT------CTCCATGCCATTAGAATAGA-AAAGGAATATAGTGAGGAGTGGTTTTGGTAGGCAG---ATCTTTGGCAGTCGGAAGTAAAATGGGTTTAACAAGGACCTCCATGAAGGTAGAGTCAGAAATAGATACTTGTCAATTTTCTTGCTGTTGACATA----CATTCTGC--AGT-ATTGTT-- s panTro4.chr2B 153173484 243 + 247518478 CCTTCTCCTACACTGGACTAAAGACAGTGGCAGAACAC----ACTCAACTTAAAGATTGCATGCTTTTGTCACCCAGTGT------CTCCATGCCATTAGAATAGA-AAAGGAATGTAGTGAGGAGTGGTTTTGGTAGGCAG---ATCTTTGGCAGTCGGAAGTAAAATGGGTTTAACAAGGACCTCCGTGAAGGTAGAGTCAGAAATAGATACTTGTCAATTTTCTTGCTGTTGACATA----CATTCTGC--AGT-ATTGTT-- i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38380071 242 + 135000294 CCCTCTCCTACACTGGGCTAAAGACAGTGTCAGAACAC----ACTGAACTTAAAGATTGCATGCTTTTCTCACCCAGTGT------CTCCACGCCATTAGAATAGA-AAAGGAATGTAGTGAGGAGTGGTTTTGGTAGGCAG---ATCTTTGGCAGTCGGAAGTAAAATGGGTTTAACAAGGACCTCCATGAAAGTAGAGTCAGAAATAGATACTTGTCAATTTTCTTGCTGTTGACATA-----ATTCTGC--AGT-ATTGTT-- i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82332488 243 - 85365473 CCCTCTCCTACACTGGACTAACGACAGTGGCAGAACAT----ACTGAACTTAAAGATTGCATGCTTTTCTCACCCAGTGT------CTCCACGCCATTAGAATAGA-AAAGGAATGTAGTGAGGAGTGGTTTTGGTAGGCAG---ATCTTTGGCAGTCGGAAGTAAAATGGGTTTAACAAGGACCTCCATGAAGGTAGAGTCAGAAATAGACACTTGTCAGTTTTCTTGCTGTTGACATA----CATTCTGC--AGT-ATTGTT-- i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11943898 218 + 106825570 CCCTCACCTACACTGGACTAAAGACAATGGCAGAACAC----ACTGAACTTGAAGATTGCATGCT-------------------------------TTGGAATAGA-AAAGGAATGTACTGAGGAAGGGTGTTGGTAGGCAG---ATCTTTGGCAGTCGGAAGTAAAATGGGTTTAACAAGGACCTCCATGAAGGTAGAGTCAGAAATAGATACTTGTCAATTTTCTTGCTGTTGACATA----CATTCTGC--AGT-ATTATT-- i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37647974 218 + 132586672 CCCTCACCTACACTGGACTAAAGACAATGGCAGAACAC----ACTGAACTTGAAGATTGCATGCT-------------------------------TTGGAATAGA-AAAGGAATGTACTGAGGAAGGGTGTTGGTAGGCAG---ATCTTTGGCAGTCGGAAGTAAAATGGGTTTAACAAGGACCTCCATGAAGGTAGAGTCAGAAATAGATACTTGTCAATTTTCTTGCTGTTGACATA----CATTCTGC--AGT-ATTATT-- i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11305190 218 + 104110932 CCCTCACCTACACTGGACTAAAGACAATGGCAGAACAC----ACTGAACTTGAAGATTGCATGCT-------------------------------TTGGAATAGA-AAAGGAATGTAGTGAGGAAGGGTGTTGGTAGGCAG---ATCTTTGGCAGTCGGAAGTAAAATGGGTTTAACAAGGACCTCCATGAAGGTAGAGTCAGAAATAGATACTTGTCAATTTTCTTGCTGTTGACATA----CATTCTGC--AGT-ATTATT-- i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34404028 243 + 128595539 CCCTCACCTACACTGGACTAAAGACAATGGCAGAACAC----ACTGAACTTGAAGATTGCATGCTTTTCTCACCCAGTGT------CTCCATGCCATTGGAATAGA-AAAGGAACGTGGTGAGGAATGGTGTTGGTAGGCAG---ATCTTTGGCAGTCGGAAGTAAAATGGGTTTAACAAGGACCTCCATGAAGGTAGAGTCAGAAATAGATACTTGTCCATTTTCTTGCTGTTGACATA----CATTCTGC--AGT-ATTATT-- i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87889907 248 - 158406734 CCCTCTCCTACACTGGACTAAAGACCCTGGCAGAACAA----AGGAAAC-TGAAGATTGCGTGCTTTTCTCACCCAGTGTGAGAGATAGAATGCCACTGGAATAGA-AAAGGAACATAGTGAAGAGGGGTGTTGGGAGGCAG---ATCTTTGACAGTCGGAAGTAAAATGGGTTTAGCAAGGACCTCCATGAAGGCAGAGTCAGAAATAGATACTTGCTGATTTTCTTGCTGTTGACATA----TGTTCTGC--AGT-ATTATT-- i calJac3.chr6 C 0 C 0 s mm10.chr2 49734108 208 + 182113224 CCTCCTTCCATGCTGGACCAATGGCAAAGGCTG----------------------------------------CCAGTGT------ATCTGTGCTGTTGCATTATG-GGAGGGATAGAACGGGGAGCAGTATCGGGAGGCAA---ATCTCAGTCA--CCAACCCAACTCACGTTTAGCAAGGGCCTCCATGATGG-GGAGTCACAGCT-GATAATTGTAGCTTTTCCTGCTGGTCACTTAGTATTGTGCTGC--AGTCATTGTT-- i mm10.chr2 I 24 I 3 s canFam3.chr19 50647342 238 + 53741614 CTCTCTTCCACGTTGGACCAGTCACAAAGGCAGAAGAACAAGACCTCACTGAAGGATTGGGGGCATTTCTCATCCCTTCT------CCCCGTGCAGTTGGGTCCTATGAAGGAGCGTGATGAGAAATGGTGTTGGCAGGCCGATCATCCTCGGCAGTCAGAATTAGT---GGTTCAGCAAGGCCCTCTG------------CTGAAATAG--GATTGTAGGATTTCTTGCTGTTAACATA----GGTTCTGCTTTGT-GTAGGTCT i canFam3.chr19 C 0 C 0 a score=91245.000000 s hg38.chr2_GL582966v2_alt 60930 25 + 96131 GACACTGGAGTCA-CTTGACATGTAC s panTro4.chr2B 153173727 25 + 247518478 GACACTGGAGTCA-CTTGACATGTAC i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38380313 25 + 135000294 GACACTGGAGTCA-CTTGACATGTAC i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82332731 25 - 85365473 GACACTGGAGTCA-CTTGACATGTAC i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11944116 25 + 106825570 GACACTGGAGTCA-CTTGACGTGTAC i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37648192 25 + 132586672 GACACTGGAGTCA-CTTGACGTGTAC i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11305408 25 + 104110932 GACACTGGAGTCA-CTTGACATGTAC i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34404271 25 + 128595539 GACACTGGAGTCA-CTTGACATGTAC i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87890155 25 - 158406734 GACATTGGAGTCA-CCTGACGTGTAC i calJac3.chr6 C 0 C 0 s canFam3.chr19 50647580 26 + 53741614 GACACTGGTGTCATTTTAACAGATAC i canFam3.chr19 C 0 C 0 e mm10.chr2 49734316 3 + 182113224 I a score=2353627.000000 s hg38.chr2_GL582966v2_alt 60955 835 + 96131 TATTGTTGAA---CT------------------------------TTTTT-----------------------AATTTTTAAtttttatttcagtaggtttttggaggacaggtggtgtttggttacatggataagttctttagtggtgatttctgagattttggtgcacccatcacctaagcagtgtacactgtacccagtgtgtgctcttttatccctcaccccact--tcccaccctttcttccaagtccccaaagtccattgtatcattcgtatgcctttgtgtcctcatagc-tagctc----------------------------------ccacttatgagtgagaatatacgatgtttggttttccattcttgagttattaatacttcacttagaataatagtctccaattccacccaggttgctccgaatgccactattccattcctttttatggctgggtagtattccatgatttt----------------------acacacacacacacacacacacacacacaca---ccacattttctttatctactcattgactgatgggcatttgggctggttccatatttttgcaattgcaaattgtgctgccgtaaacatgc--------acgtctttttcatgtaatgacatctttt-ctttgggtagatacccagtagtgggattgctggattgagtggcatatctacttttagttctttaaagaatctccacactgttttccatagtggttgtactagtttacgttcccaccagcagtgtaaaagcattccctgttcatcacttccatgccaacatctatt--tttttttatttttttt--attatggccattcttgcagaagcaaggtggtttcacattgtggttttgatttgcatttcactgataattaatgatgttgagccttttctatatgtgtgttggctatttatat s panTro4.chr2B 153173752 831 + 247518478 TATTGTTGAA---TT------------------------------TTTTT-----------------------AATTTTTAAtttttatttcagtaggtttttggaggacaggtggtgtttggttacatggataagttctttagtggtgatttctgagattttggtgcacccatcacctaagcagtgtacactgtacccagtgtgtgctcttttatccctcaccccact--tcccaccctttcttccaagtccccaaagtccattgtatcatttgtatgcctttgtgtcctcatagc-tagctc----------------------------------ccacttatgagtgagaatatacgatgtttggttttccattcttgagttattaatacttcacttagaataatagtctccaattccacccaggttgctccgaatgccactattccgttcctttttatggctgggtagtattccatgatttt----------------------------atacacacacacacacacacacaca---ccacattttctttatctactcgttgactgatgggcatttgggctggttccatatttttgcaattgcaaattgtgctgccgtaaacatgc--------acgtctttttcatgtaatgacatcttttcctttgggtagatacccagtagtgggattgctggattgagtggcagatctacttttagttctttaaagaatctccacactgttttccatagtggttgtactagtttacattcccaccagcagtgtaaaagcattcccttttcatcacttccatgccaacatctatt-atttttttatttttttt--attatggccattcttgcagaagcaaggtggtttcacattatggttttgatttgcatttcactgataattaatgatgttgagccttttctatatgtgtgttggctatttatat i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38380338 833 + 135000294 CATTGTTGAA--TTT------------------------------TTTTT-----------------------AATTTTTAGtttttatttcagtaggtttttggaggacaggtgttgttgggttacatggataagttctttagtggtgatttctgagattttggtgcacccatcacctaagcagtgtacactgtacccagtgtgtgctcttttatccctcaccccact--tcccaccctttcttctgagtccccaaggtccattgtatcatttgtatgcctttgtgtcctcatagc-tatctc----------------------------------ccacttatgagtgagaatatatgatgtttggttttccattcttgagttattaatacttcacttagaataatagtctccaattccacccaggttgctccgaatgccactatttcattcctttttatggctgggtagtattccatgatttt----------------------------atgtatacacacacac-cccacaca---ccacattttctttatctactcgttgactgatgggcatttgggctggttgcatatttttgcaattgcgaattgtgctgccataaacatgc--------atgtctttttcatataatgacatcttttcctttgggtagatacccagtagtgggattgctggattgagtggcagatctacttttagttctttaaagaatctccacactgttttccatagtggttgtactagtttacattcccactagcagtgtaaaagcattcccttttcatcacttccattcaaacatctatt-attttttgatttttttttaattatggccattcttgcagaagcaaggtggtttcacattgtggttttgatttgcatttcactgataattaatgatgttgaaccttttccgtatgttttttggctatttatat i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82332756 859 - 85365473 TATTGTTGAA--TTT------------------------------TTTTT-----------------------AATTTTTAAtttttatttcagtaggtttttggaggacaggtggtgtttggttatatggacgagttctttagtggtgatttctgagattttggtgcacccatcacctaagcagtgtacactgtacccagtgtgtgctcttttatccctcaccccact--tcccaccctttcttccgagtccccaaagtccattgtatcattcgtatgcctttgtgtcctcatagc-tggctc----------------------------------ccacttatgagtgagaatatacgatgtttggttttccgttcttgaattattaatacttcacttagaataatagtctgcaattccacccaggttgctctgaatgccactatttcattccttttta-ggctgggtagtattccatgattttatgtatatacatatatatatgtatacacacacacacacacacacacacacaca---ccacattttctttatgtacttgttgactgatggacatttgggctggttccatatttttgcaattgcgaattgtgctgccataaacatgc--------atgtcttttgcatataatgacatcttttcctttgggtagatacccagtagtgggattgctggatcgagtggcagatctacttttagttctttaaagaatctccacactgttttccatagtggttgtactagtttacattcccaccagcagtgtaaaagcgttcccttttcatcacttccatgccaacatctatt-attttttgatttttttt--attatggccattcttgcagaagcaaggcggtttcacattgtggttttgatttgcatttcaccgataattaatgatgttgagccttttccatatgtgtgttggctatttatat i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11944141 837 + 106825570 TATCGTTGaattttt------------------------------ttttt-----------------------aatttttaattttgatttcaatagatttttggaggacaggtggtgtttggttacatggataagttctttagtggtgatttctgagattttggtgcacccatcacctaagcagtgtacactgtacccaatatgtactcttttatccctcaccccact--tcccaccctttcctccatgtccccaaagtccgttgtatcattcttatgcctttgtgtcctcatagc-tagctt----------------------------------tcacttataagtgagaatatatgatgtttggtttcccgctcttgagttattaatacttcacttagaataatggtctccaattccacctaggttgctgcgaatgccactatttcgttcctttttatggctgagtagtattccatg---------------------------gtatatatatatatacacatacacacacacacccccacattttctttatctactcgtt-actgatgggcatttgggctggttccatatttttgaaattgcgaattgtgctgccatgaacatgc--------atgtctttttcatataatgacatcttttcctctgggtagatacccagtagtaggattgctggatcgagtcgcagatctacttttagttctttaaagaatctcctcattgttttccatagtggttgtactagtttacattcccaccagcagtgtaaaagcattcccttttcatcacatccatgccaacatctatt-attttttaatttttttg--attatggccagtcttgcagaagcaaggtggtttcacattgtggttttgatttgcatttcactgataattaatgatgttgagccttttccatatgtttgttggccatttatat i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37648217 845 + 132586672 TATCGTTGAA-TTTT------------------------------TTTTA-----------------------AATTTTTAAttttgatttcaatagatttttggaggacaggtggtgtttggttacatggataagttctttagtggtgatttctgagattttgatgcacccatcacctaagcagtgtacactgtacccaatatgtactcttttatccctcaccccact--tcccaccctttcctccatgtccccaaagtccgttgtatcattcttatgcctttgtgtcctcatagc-tagctt----------------------------------tcacttataagtgagaatatatgatgtttggtttcccgctcttgagttattaatacttcacttagaataatggtctccaattccacctaggttgctgcaaatgccactatttcgttcctttttatggctgagtagtattccatgatttt----------------ata--tgtgtatatatatatacacatacacacacacacccccacattttctttatctactcgtt-actgatgggcatttgggctggttccatatttttgaaattgcgaattgtgctgccatgaacatgc--------atgtctttttcatataatgacatcttttcctctgggtagatacccagtagtaggattgctggatcgagtggcagatctacttttagttctttaaagaatctccacattgttttccatagtggttgtactagtttacattcccaccagcagtgtaaaagcattcccttttcatcacatccatgccaacatctatt-attttttaatttttttg--attatggccagtcttgcagaagcaaggtggtttcacattgtggttttgatttgcatttcactgataattaatgatgttgagccttttccatatgtttgttggccatttatat i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11305433 841 + 104110932 TAtcgttgaa-tttt------------------------------ttttt-----------------------aatttttaattttgatttcaatagatttttggaggacaggtggtgtttggttacatggataagttctttagtggtgatttctgagattttggtgca--catcacctaagcagtgtacactgtacccaatatgtactcttttatccctcaccccact--tcccaccctttcctccgTGTCCCCAAAGTccgttgtatcattcttatgcctttgtgtcctcatagc-tagctt----------------------------------tcacttataagtgagaatatatgatgtttggttttccactctTGAGTTATTaatacttcacttagaataatggtctccaattccacctaggttgctgcgaatgccactatttcgttcctttttatggctgagtagtattccatgatttt----------------atatgtgtgtatatatatatatacacatacacacacacccccacat----tTTATCTACTCgtt-actgatgggcatttgggctggttccatatttttgaaattgcgaattgtgctgccataaacatgc--------atgtctttttcatataatgacatcttttcctctgggtagatacccagtagtaggattgctggatcgagtggcagatctacttttagttctttaaagaatctccacattgttttccatagtggttgtactagtttacattcccaccagcagtgtaaaagcattcccttttcatcacatccatgccaacatctatt-attttttaatttttttg--attatggccagtCTTGCAGAAGCAAGGTGGtttcacattgtggttttgatttgcatttcactgataattaatgatgttgagccttttccatatgtttgttggccatttatat i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34404296 928 + 128595539 TATTGTTGAA-TTTTTAAAAAATTTTAAATTTTGATTTCAATAGATTTTTGGAGGACAGGTGNNNNNNNNNNAAATTTTAAAttttgatttcaatagatttttggaggacaggtggtgtttggttacatggataagttctttagtggtgatttctgagattttggtgcacccatcacctaagcagtgtacactgtacccaatatgtactcttttatccctcactccact--tcccaccctttcctccatgtccccaaagtctgttgtatcattcttatgcctttgtgtcctcatagc-tagctttcacttataagtgagaatatatgannnnnnnnnntcacttataagtgagaatatatgatgtttggttttccattcttgagttattaatacttcacttagaataatggtctccaattccacctaggttgctgtgaatgccactatttcattcctttttatggctgagtagtattccatgatttt----------------ata--tgtatacacacacacacacacacacacacaca---ctacattttctttatctgctcgtt-actgatgggcatttgggctggttccatatttttgaaattgcgaattgtgctgccataaacatgc--------atgtctttttcatataatgacatcttttcttctgggtagatacccagtagtgggattgctggatcgagtggcagatctacttttagttctttaaagaatctccacattgttttccatagtggttgtactagtttacattcccaccagcagtgtaaaagcattcccttttcatcatatccatgccaacatctatt-attttttaatttttttg--attatggccagtcttgcagaagcaaggtggtttcacattgtggttttgatttgcatttcactgatagttaatgatgttgagccttttccatgtgtttgttggccatttata- i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87890180 815 - 158406734 TATTGTTGAA---TT------------------------------TTTTT-------------------------TTTTTAAtttttatttcagtagccttttggaggacaggtggtgtttggttacatggataagttctttagtggtgatttctgagactttg-tgtgcccatcacctgagcagtgtacactgtacccaatgtgtagacttttctctctcaccaccctgatgccattctttcctccaagtccccaaagtccattatatcattcttaggcctttatgttctcatagcttagctc----------------------------------ccacttgtgagtgagaacatacgatgtttggttttccatt---------------cttcatgtagaataatagtctcctattccatccaggatgctgcaaatgccactattttgttcctttttatggttgagtagtattccatgtgtgt----------------gtgtgtgtgtgtgtgtgtata-----------------------attttttaaatctacttgttgactgatgggcatttgggccgattccatatttttggaattgcaagttgtgctgctataaacatgcttgtgcaagtgtctttttcatataatgacttcttttcctctgggtagatacccagtagtgggattgctgaattgagtggtagctctactttcagttctttaaggaatctccacactgttttccagagtggttgtactagtttacatccccaccagcagtaaagaagc-ttcccttttcaccacatctatgccaacatctattcatgttttgatttttttt--attatggccattcttgcagaagcaaggtggttttgcattgtggttttgatttgca-ttcgctgataattaatgatgttgagcattttccatatgtttgttggccatttgtat i calJac3.chr6 C 0 C 0 e canFam3.chr19 50647606 0 + 53741614 C e mm10.chr2 49734316 3 + 182113224 I a score=1862489.000000 s hg38.chr2_GL582966v2_alt 61790 520 + 96131 TGTTGTTGAATTCTTATGGTAAGGTTGAT--GCCAAACTACAGGCACTCAGCAGTTTCTAGTGTACTTCATATTTGCTACCAAATTTCAGGGCTGATACCTGGTTCCATTT--TTTTAGCCCTCAAATGTTTACTGAACAGATAGTGA---TATGATGAGTGAATGACATCAATAACGACAT----------------------AGGTGGGCACTC-AGAGTGTACTGTGGAACATCAAA------------------AAACCACGGTTGGAGTCATTGTCTTTCAACCAGTGGAAGCCTGTGTTTCTGCGCTGGATTCT----GGACAGGGCTCTTTGTTTTCTCTTAAGGTGCTAGGCTGCACTCTGGTGGCTAAACAAAATATGCACACAGTTACTTGCTCATTTGGTCAATTGCTCTTAAAGACCATGTTTGCATTTC---AGCGGATGGGTTTCTATCCCAAGTAGCTTGCTTCAACTTTTG-TTTCAAGTAGAGCTTTGAAACTTAGAAACTAAATA-TAGATCATGCGGGAATGCTGGCTGTCAGAATCTT--------------CTTT------------TCTAAG-GTGGATTTA s panTro4.chr2B 153174583 520 + 247518478 TGTTGTTGAATTCTTATGGTAAGGTTGAT--GCCAAATTACAGGCACTCAGCAGTTTCTAGTGTACTTCATATTTGCTATCAAATTTCAGGGCTGATACCTGGTTCCATTT--TTTTAGCCCTCAAATGTTTACTGAACAGATAGTTA---TATGATGAGTGAATGACATCAATAACGACAT----------------------AGGTGGGCACTC-AGAGTGTACTGTGGAACATCAAA------------------AAACCATGGTTGGAGTCATTGTCTTTCAACCAGTGGAAGCCTGTGTTTCTGCGCTGGATTCT----GGACAGGGCTCTTTGTTTTCTCTTAAGGTGCTAGGCTGCACTCTGGTGGCTAAACAAAATATGCACACAGTTACTTGCTCATTTGGTTAATTGCTCTTAAAGACCATGTTTGCATTTC---AGCGGATGGGTTTCTATCCCAAGTAGCTTGCTTCAACTTTTG-TTTCAAGTAGAGCTTTGAAACTTAGAAACTAAATA-TAGATCATGCAGGAATGCTGGCTGTCAGAATCTT--------------CTCT------------TCTAAG-GTGGATTTA i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38381171 520 + 135000294 TGTTGTTGAATTCTTATGATAAGGTTGAT--GCCAAATTACAGGCACTCAGCAGTTTCTAGTGTACTTCATATTTGCTACCAAATTTCAGGGCTGATACCTGATTCCATTT--TTTTAGCCCTCAAATGTTTACTGAACAGATAGTTA---TATGATGAGTGAATGACAGCAATAACGACAT----------------------AAGTGGGCACTC-AGAGTGTACTGTGGAACATCAAA------------------AAACCATGGTTGGAGTCATTGTCTTTCAACCAATGGAAGCCTGTGTTTCTGCGCTGGATTCT----GGACAGGGCTCTTTGTTTTCTCTTAAGGTGCTAGGCTGCCCTCTGGTGGCTAAACAAAATATACACACAGTTACTTGCTCATTTGATCAATTGCTCTTCAAGACCATGTTTGCATTTC---AGCAGATGGGTTTCTATCCCAAGTGTCTTGCTTCAACTTTTG-TTTCAAGTAGAGCTTTGAAACTTAGAAACTAAATA-TAGATCATGCAGGAATGCTGGCTGTCAGAATCTT--------------CTCT------------TCTAAG-GTGGATTTA i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82333615 521 - 85365473 TGTTGTTGAGTTCTTATGGTAAGGTTGAT--GCCAAATTACAGGCACTCAGCAGTTTCTAGTGTACTTCATATTTGCTACCAAATTTCAGGGCTGATACCTGATTCCATGT--TTTTAGCCCTCAAATGTTTGCTGAACAGATAGTTA---TATGATGAGTGAATGACGGCAATAGCGACGT----------------------AAGTGGGCACTCAAGAGTGTACTGTGGAACCTCAAA------------------AAACCATGGTTGGAGTCACTGTCTTTCAACCAATGGAAGCCTGTGTTTCTGCGCTGGATTCT----GGACAGGGCTCTTTGTTTTCTCTTAAGGTGCGAGGCTGCCCTCTGGTGGCTAAACAAAATATGCACACAGTTACTTGCTCATTTCGTCAATTGCTCTTCAAGACCATGTTTGCATTTC---AGCAGATGGGTTTCTATCCCAAGTATCTTGCTTCAACTTTTG-TTTCAAGTAGAGCTTTGAAACTTAGAAACTAAATA-TAGATCATGCAGGAATGCTGGCTGTCAGAATCCT--------------CTCT------------TCTAAG-GTGGATTTA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11944978 520 + 106825570 TGTTGTTGAATTCTTATGGTAAGGTTGAT--GCCAAATTACAGGAACTCAGCAGTGTCTAGTGTACTTCATATTTGCTACCAAATTTCAAGGCTGATGCCTGATTCCATTT--TTTTAGCCCTTAAATGTTTATTGAACAGATAGTTA---TATGATGAGTGAATGACAGCAATAACGACAT----------------------AAGTGGGCACTCGGGAGTGTACTGTGGAACATCAAA------------------AAACCATGGTTGGAGTCATTGTATTTCAACCAATGGAAGCCTCTGTTTCTGCGCCGGATTCT----GGACGAGGTTCTTTGTTTTCTCTTAAGGTGCTAGGCTGCCCTCTGGTGGCTAAACAAAATATGCACACAGTTACTTGTTCATTTGGTCAATTGCTCTTAAAGACCCTGTTTGCATTG----AGCCGATGGGTTTCTATCCCAAGTATCTTGCTTCAACTTTTG-TTTCCAGTAGAGCTTTGAAACTTAGAAACCAAATA-TAGATCATGCAGGAATTCTGGCTGTCAGAATCTT--------------CTCT------------TCTAAG-GTGGATTTA i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37649062 520 + 132586672 TGTTGTTGAATTCTTATGGTAAGGTTGAT--GCCAAATTACAGGAACTCAGCAGTGTCTAGTGTACTTCATATTTGCTACCAAATTTCAAGGCTGATGCCTGATTCCATTT--TTTTAGCCCTTAAATGTTTATTGAACAGATAGTTA---TATGATGAGTGAATGACAGCAATAACGACAT----------------------AAGTGGGCACTCGGGAGTGTACTGTGGAACATCAAA------------------AAACCATGGTTGGAGTCATTGTATTTCAACCAATGGAAGCCTCTGTTTCTGCGCCGGATTCT----GGACGAGGTTCTTTGTTTTCTCTTAAGGTGCTAGGCTGCCCTCTGGTGGCTAAACAAAATATGCACACAGTTACTTGTTCATTTGGTCAATTGCTCTTAAAGACCCTGTTTGCATTG----AGCCGATGGGTTTCTATCCCAAGTATCTTGCTTCAACTTTTG-TTTCCAGTAGAGCTTTGAAACTTAGAAACCAAATA-TAGATCATGCAGGAATTCTGGCTGTCAGAATCTT--------------CTCT------------TCTAAG-GTGGATTTA i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11306274 520 + 104110932 tgTTGTTGAATTCTTATGGTAAGGTTGAT--GCCAAATTACAGGCACTCAGCAGTGTCTAGTGTACTTCATATTTGCTACCAAATTTCAAGGCTGATGCCTGATTCCAttt--ttttAGCccttaaatgtttattgaacagaTAGTTA---TATGATGAGTGAATGACAGCAATAACGACAT----------------------AAGTGGACACTCGGGAGTGTACTGTGGAACATCAAA------------------AAACCATGGTTGGAGTCATTGTATTTCAACCAATGGAAGCCTCTGTTTCTGCGCCGGATTCT----GGACGaggttctttgttttctcttaaggTGCTAGGCTGCCCTCTGGTGGCTAAACAAAATATGCACACAGTTACTTGTTCATTTGGTCAATTGCTCTTAAAGACCCTGTTTGCATTG----AGCCGATGGGTTTCTATCCCAAGTATCTTGCTTCAACTTTTG-TTTCCAGTAGAGCTTTGAAACTTAGAAACCAAATA-TAGATCATGCAGGAATTCTGGCTATCAGAATCTT--------------CTCT------------TCTAAG-GTGGATTTA i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34405224 519 + 128595539 --tTGTTGAATTCTTATGGTAAGATTGAT--GCCAAATTACAGGCACTCAGCAGTGTCTAGTGTACTTCATATTTGCTACCAAATTTCAAGGCTGATGCCTGATTCCATTT--TTGTAGCCCTTAAATGTTTACTGAACAGATAGTTA---TATGATGAGTGAATGACAGCAATAACGACAT----------------------AAGTGGGCACTCGGGAGTGTACTGTGGAACATCAAA------------------AAACCATGGTTGGAGTCATTGTCTTTCAACCAATGGAAGCCTCTGTTTCTGCGCTGGATTCT----GGACGGGGTTCTTTGTTTTCTCTTAAGGTGCTAGGCTGCCCTCTGGTGGCTAAATAAAATATGCACACAGTTACTTGTTCATTTGGTGAATTGCTCTTCAAGACCCTGTTTGCATTTC---AGCCGATGGGTTTCTATCCCAAGTATCTTGCTTCAACTTTTG-TTTCCAATAGAGCTTTGAAACTTAGAAACCAAATA-TAGATCATGCAAGAATTCTGGCTGTCAGAATCTT--------------CTCT------------TCTAAG-GTGAATTTA i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87890995 519 - 158406734 TGTTGTTGAATTCTTATGGTAAGGTCAAT--GCCAAGTTACAGGCACTCAGCAGTGTCCAGTGTACTCCATGTTTGCTACCAAATATCAGGGCCGATACCCGATTCCATTT--TTTTAGCCCTCAAACATTTACTGAACAGATAGTTA---TATGATGAGTTAATGA---------------------------------------ATGGGCACTC-AGCGTGTACTGTGCAACATCAAAAAAAAAACCAAAAAAAACAAAACATGGTTGGAGTCATTGTTTTTCAACCAATGGAAGCCGGTGTTTCTGTGCTGGATTCT----GGACAGGGCTCTTTGTTTTCTCTTGAGGTGCTACGCTGCCCTCTGGTGGCTAAACAAAATATGCACACAGTTACTTGCTCATTCTGTCAATTGCTCTTCAAGACGATGTTTACATTTC---ATCAGATGGGTTTCTATCCCAAATACTTTGCTTCAACTTTTG-TTTCCGGTAGAGCTTTGAAACTT--TAACCAAACA-TAGATCATGCAGGAATGCTGGATGTCAGAATCTT--------------CCCT------------TCTAAG-GTGGATTTA i calJac3.chr6 C 0 C 0 s mm10.chr2 49734319 478 + 182113224 TGGTATTGAATTCTTA---TATGGTTAATAAATCACAATACAGGAACGCAAAACT-----GTATACTTCATGTTTGCTACCAATATTTAGGGCTCATACCCAATATCATTTTATCTCAGTTCTCAAATGTTTAC---ACAGAAAAATA---TGTGAT---TTAATGACAGCAATGATAACATTTGAGGAGGTGGGAGGGGCAGAGAGGGGGCTGATGGGAGGACACCG---AACATCAGA------------------A----ATTGCTGG------------------------------CGTTCCTGGGCTAGATTCTGCTGGGACATAG---------TCTTCCTAAGGTGCAAGGCTGCCCTCTGGTGGTTAAACATAGTGCACACAAAGCTACTTTTCTGCATGGTTCA----GCTTGTATACCATG----CATCTT---AGCAGATGGG--TCTAACCCAA-TACCTTGTCTCCATTTTTGTTTTCTAGTGGAGTTCTGAAAGTTAGAAACCAGATA-TACCTCATTCAGGAATTCTG----TCAGAACCAT--------------CTCT------------TGTCAGTGTTAACTTA i mm10.chr2 I 3 C 0 s canFam3.chr19 50647606 542 + 53741614 TGTTGTGGAA-TCCTAGGGGAAGGTTGAC--ACCATGTTACAGGCACTCAG-----TGCGGGATCCTTCCTATTGGCTACCAGTTTTCAGGGTTGATACACGATTCCATAC--TCCTAGGTCTTAGATTTTTACGGAAAAAAAAATCATCCTATGATGAGTTAATGACAGCAATAATGACAA----------------------GAGTGGGCAGTT-ATAATTCGCTGTGGAACATTAAA------------------A--CCTTATTTGGAATCATGGTCTTAGAACCGACTGAAGCTTCGTTTTCTGGGCTGGGTACT----GGACAGCGCTCGTC-CTTTCTCCTGAGGTGCTGGGACGCCCTCTGGTGTTTAAACAAAATACGCAC--AGTTATTTGCTCATCTGATTAATTGCCCTTCCAGAGCACGTTTGCATCTTGAGAGCCAATGGGTTTCTGTCCCAAGAATCTAGCTTCAGTTTTTG-TTTTCAGCTGAGCTCTGAAACCCAGACACCAAATAGGAGATCATTCTGAAAGAGCGGCTTTCAGAGTCTTTGTAAAGGTGAAACCTCTTACCTGGTAAACTCTCAG-GTAATttta i canFam3.chr19 C 0 I 128 a score=1462679.000000 s hg38.chr2_GL582966v2_alt 62310 419 + 96131 GAC-------------------------------------TGTTGTTCTCAGATGATCTTAAATA--ATGAGCTAGATTACTGTCTGTTTGGAAGGAACAGGTGTGAAAAGGCAAAGGAAAATAGACTGGTAGTAGTAATGAAAAGTTATGCTGAGAAACCTTCAT-C-AAGAAGCCCTTTGGTAATTCATAGTACATTCTTATTTATTCGATTTT-----CTGTTTAATTGAGGACT--ACATAGAAACACCTTTTTATTTCAATCCTTGTTTATAGAAACATATTCAAGGCATTACACTACTTGTCTACCTGAATAAGCACACTATAGAGAACATTAATGAAGTTTTGATTTGAG-----TTTTTATAGGA------ATTCAGCATCACCTTTCGGAGCATTGGGTGTCGCT--GCTGTTACAGAGATGTAAGGTGTAAGACATTGAATGGAATACCTTTTTGAAGTTATCTCCTTTT s panTro4.chr2B 153175103 419 + 247518478 GAC-------------------------------------TGTTGTTCTCAGATGATCTTAAATA--ATGAGCTAGATTACTGTCTGTTTGGAAGGAACAGGTGTGAAAAGGCAAAGGAAAATAGACTGGTAGTAGTAATGAAAAGTTATGCTGAGTAACCTTCAT-C-AAGAAGCCCTTTGGTAATTCATAGTACATTCTTATTTATTCGATTTT-----CTGTTTAATTGAGGACT--ACATAGAAACACCTTTTTATTTCAATCCTTGTTTATAGAAACATATTCAAGGCATTATACTACTTGTCTACCTGAATAAGCACACTATAGAGAACATTAATGAAGTTTTGATTTGAG-----TTTTTATAGGA------ATTCAGCATCACCTTTCGGAGCATTGGGTGTCGCT--GCTGTTACAGAGATGTAAGGTGTAAGACATTGAATGGAATACCTTTTTGAAGTTATCTCCTTTT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38381691 418 + 135000294 GAC-------------------------------------TGTTGTTCTCAGATGATCTTAAATA--ATGAGCTAGATTACTGTCTGTTTGGAA-GAACAGGTGTGAAAAAGCAAAGGAAAATAGACTGGTCGTAGTAATGAAAAGTTACGCTGAGAAACTTTCAT-C-AAGAAGCCCTTTGGTAATTCATAGTACATTCTTATTCATTAGATTTT-----CTATTTAATTGAGAACT--ACATAGAAACACCTTTTTATTTCAATCCTTGTTTATAGAAACATATTCAAGGCATTATCCTACTTGTCTACCTGAATAAGCATACTATAGAGAACATTAATGAAGTTTTGATTTGAG-----TTTTTATAGGA------ATTCAGCACCACCTTTAGGAGCATTTGGTGTCGCT--GATGTTACAGAGATGTAAGGTGTAAGACATTGAATGGAATACCTTTTTGAAGTGATCTCATTTT i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82334136 419 - 85365473 GAC-------------------------------------TGTTGTTCTCAGATGATCTTAAATA--ATGAGCTAGATAACTGGCTGTTTGGAAGGAACAGGTGTGAAAAAGCAAAGGAAAATAGACTGGTAGTAGTAATGAAAAGTTATGCTGAGAAACCTTCAT-C-AAGAAGCCCTTTGGTAATTCATAGTACATTCTTATTAAATCGATTTT-----CTATTTAATTGAGGACT--ACATAGAAACACCTTTTTATTTCAATCCTTGTTTATAGAAACATATTCGAGGCATTATACTACTTGTCTACCTGAATAAGCACACTATAGAGAACATTAATGAAGTTTTGATTTGAG-----TTTTTATAGGA------ATTCAGCATCACCTTTAGGAGCATTGGGTGTCGCT--GCTGTTACAGAGATGTAAGGTGTAAGACATTGAATGGAATACCTTTTTGAAGTTATCTCCTTTT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11945498 421 + 106825570 GAC-------------------------------------TGTTGTTCTCAGAGGATCTTAAATA--ATGAGCTAGATTACTGTCTGCTTGAAAGGAGCAGGTGTGAAAAGGCAAAGGAAAATAGACTAGTAGTAGTAATGAAAAGTTATGCTGAGAAACCTTCAT-C-AAGAAGCCCTTTGGTAATTCATAGTACATTCTTATTCATTCAATTTT-----CTATTTAATTGAGGACTAAACATGGAAACACCTTTTTATTTCAATCCTTGTTTATAGAAACATATTCAAGGCATTATACTACTTCTCTACCTGAATAAGCACACTATGGAGAACATTAATGAAGTTTTGATTTGAG-----TTTTTATAGGA------ATTCAGCATCACCTTTAGGAGCATTAGGTCTTGCT--GCTGTTACAGAGATATAAGGTGTAAGACATTGAATGGAATACCTTTTTGAAGTTATCTCCTTTT i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37649582 421 + 132586672 GAC-------------------------------------TGTTGTTCTCAGAGGATCTTAAATA--ATGAGCTAGATTACTGTCTGCTTGAAAGGAGCAGGTGTGAAAAGGCAAAGGAAAATAGACTAGTAGTAGTAATGAAAAGTTATGCTGAGAAACCTTTAT-C-AAGAAGCCCTTTGGTAATTCATAGTACATTCTTATTCATTCGATTTT-----CTATTTAATTGAGGACTAAACATGGAAACACCTTTTTATTTCAATCCTTGTTTATAGAAACATATTCAAGGCATTATACTACTTCTCTACCTGAATAAGCACACTATGGAGAACATTAATGAAGTTTTGATTTGAG-----TTTTTATAGGA------ATTCAGCATCACCTTTAGGAGCATTAGGTCTTGCT--GCTGTTACAGAGATATAAGGTGTAAGACATTGAATGGAATACCTTTTTGAAGTTATCTCCTTTT i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11306794 421 + 104110932 GAC-------------------------------------TGTTGTTCTCAGAGGATCTTAAATA--ATGAGCTAGATTACTGTCTGCTTGAAAGGAGCAGGTgtgaaaaggcaaaggaaaatagACTGGTAGTAGTAATGAAAAGTTATGCTGAGAAACCTTCAT-C-AAGAAGCCCTTTGGTAATTCATAGTACATTCTTATTCATTCgatttt-----ctatttaattgagGACTAAACATGGAAACACCTTTTTATTTCAATCCTTGTTTATAGAAACATATTCAAGGCATTATACTACTTCTCTACCTGAATAAGCACACTATGGAGAACATTAATGAAGTTTTGATTTGAG-----TTTTTATAGGA------ATTCAGCATCACCTTTAGGAGCATTAGGTCTCGCT--GCTGTTACAGAGATATAAGGTGTAAGACATTGAATGGAATACCTTTCTGAAGttatctcctttt i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34405743 409 + 128595539 GAT-------------------------------------TGTTGTTCTCAGAGGATCTTAAATA--------------ACTGTCTGCTTGAAAGGAGCAGGTGTGAAAAGGCAAAGGAAAATAGACTGGTAGTAGTAATGAAAAGTTATGCTGAGAAACCTTCAT-C-AAGAAGCCCTCTGGTAATTCACGGTACATTCTTATTCATTCGATTTT-----CTATTTAATTGAGGACTAAACATGGAAACACCTTTTTATTTCAATCCTTGTTTATAGAAACATATTCAAGGTATTATACTACTTCTCTACCTGAATAAGCACACTGTGGAGAACATTAATGAAGTTTTGATTTGAG-----TTTTTATAGGA------ATTCAGCATCACCTTTAGGAGCATTGGGTCTCGCT--GCTGTTACAGAGATATAAGGTGTAAGACATTGAATGGAATACCTTTTTGAAGTTATCTCCTTTT i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87891514 416 - 158406734 GAC-------------------------------------TGTTGTTCTCAGATGATCTTAAATA--ATGAGCTAGATTACGGTCTGTTTGGAAGGAGTAGGTGTGAAAAAGCAAAGGAAAATAGACTG---GTAATAATGAAAACTTAGGCTGAGAAACCTTTAT-C-AAGAAGCCCTTTGTTAATTAATGGTGCATTCTTATTCATTTGATTTT-----CTGTGTAATTGAGGACT--ATATAGAAACACCTTTTTATTTCAATCCTTGTTTATAGAAACATATGCAAGGCATTATACTACTTCTCTACCTCAATAAACATACTATAGGGAACATTAATGAAGTTTTGATTTGAA-----TTTTTATAGGA------ATTCAACATCACCTTTAGGAACATTGGGTCTCACT--GCTGTTACAGAGATGTAAGGTGTAAGACATTGAATGGAATACCTTTTTGAAATTATCTCCTTTT i calJac3.chr6 C 0 I 308 s mm10.chr2 49734797 371 + 182113224 GGC---------------------------------------TTGTTCTTAGAT-ATCT----TA--TCAGAGTAGGTTACTGTCTACTTGGAAGG-GCAGCTCCAAAAAGGCAAAGGAAA--AGATTGGTAGCAGCA---GATGGCTAAGCATGGAAATTTTCACAT-GAGGAGGCACTGGGCGATT---GGTGCATTCTCTGGCATTAGAGGTT-----CTGT----TTGAAGAGT--GTGGTGAAAGTCTTTTATAGTTCAGCCATTGCATGTAGA-------------CATCAGGCTCCTCACC------ACTACGGAAAGTGTGGAGAAGAGAATTGAAGTGCTGGGTGGAACTTCTTCTCTACAGGCGAGATTATGAAGGGCCCCCACTAGGGACATTGGGTC-------ACCGTTGTAGACATGCAGGGTG----------------GGGCTTCTGAGGAGGGTTCTCCTTCA i mm10.chr2 C 0 C 0 s canFam3.chr19 50648276 455 + 53741614 gacagtcgagtcggccacttaacgggctgcgccactgaggtgtcccACTCAGATAACCTTGAATAATATAAGCTAGAGCCTTGTCTCCTTGGAAGGGGCAAGCGCGTAGAGACAGGAAAATGCAGATTGGTAGTA--AACGGAAAGTCATGTAGGAAGGCCTTCAT-CTAAAAGGACATTTGGTAAT----GGCAGATGCTTATTCACGAGATTTTTGTTGTTGTTTAACTGAAGACC----ATAGAAAATCCTTTTTATTCCAACCGTTGCTTATAGAAGCATATTCAAGACATTAGACTACTTCTCTCTCTGAATA-GCAGACCATAGAGAACATGATTGAAAT--TGATTTGAG-----TTCTCATAGGG------ACACAGAGTCACCTTTAGAAACAGTAGGCCTTGCCAAGCTATTCTAGAAATGTAAGGTATTAGACGTTGAATGGGATACCTCTTCAGAGTTCTCTCTTTTT i canFam3.chr19 I 128 C 0 a score=2471422.000000 s hg38.chr2_GL582966v2_alt 62729 686 + 96131 AAAAATCTTCAGT--GTTTCTTCTTATGCTGTCAT--TTCTCTTTCTAAAAATTGATGGTAATG-AAAAACCTAGTTAATTGAGGATTATATTTAGTAGGGGGTTTCAACTGA-----------------------------------------------AAGTTTCACCTGAG--GTGTAGGAGAACTTGGGGT------------TGA-------ATGTTTAGT--------------ACTTTCCGCTTG---TCCTTTAATTA-GGATTCTGAACCAGAAATCCATGGACACCTTGGGGATCCAGGGGCAGGTTTCCAGGGAGTCCGTGAACCTATGGAAATTGTGGGCAACATTTGAGTGTGTCCCCTTCTTTGCTCAGTTGGCAGATGTGAATGGAGTCATTGAGGAGGAGTTTACCATGGCCCGCCTGTACATCAGCAAGATGAAGTCAGAGGTCAAGTCCCTGGTGAACCGCAGCAAACAGCTCGAGAGCGCCCAGATGGACTCCAACAGGAAGATGAATGCCAGCGAGCGGGAGCTGGCAGCCTGCCAGCTGCTCATCTCCCAGGTGGGCCCTTCCCTTCCCCATCATTG--CACTCTTGTTGTCTTGAGATCTGCTCC---CTCCATGCCCTTGCTGGTG-CTGATGGTGCAC----CTTAGGCTTAGTTGAGGGAC--TGCTTTGTGTAAG----------------------------------------------------------------------------------------------------------------------------------------------CTTGGCCT----------CCCCA------------------------GGTGATGGCAG-------------------CCCAGGTCTATTCCTAGGGCTACATTTTGTTGTGTGAAATAGATGAATTCTGTTGAGTCCGTTC---- s panTro4.chr2B 153175522 686 + 247518478 AAAAATCTTCAGT--GTTTCTTCTTATGCTGTCAT--TTCTCTTTCTAAAAATTGATGGCAATG-AAAAACCTAGTTAATTGAGGATTATATTTAGTAGGGGGTTTCAACTGA-----------------------------------------------AAGTTTCACCTGAG--GTTTAGGAGAACTTGGGGT------------TGA-------ATGTTTAGT--------------ACTTTCCGCTTG---TCCTTTAATTA-GGATTCTGAACCAGAAATCCATGGACACCTTGGGGATCCAGGGGCAGGTTTCCAGGGAGTCCGTGAACCTATGGAAATTGTGGGCAACATTTGAGTGTGTCCCCTTCTTTGCTCAGTTGGCAGATGTGAATGGAGTCATTGAGGAGGAGTTTACCATGGCCCGCCTGTACATCAGCAAGATGAAGTCAGAGGTCAAGTCCCTGGTGAACCGCAGCAAACAGCTCGAGAGCGCCCAGATGGACTCCAACAGGAAGATGAATGCCAGCGAGCGGGAGCTGGCAGCCTGCCAGCTGCTCATCTCCCAGGTGGGCCCTTCCCTTCCCCATCATTG--CACTCTTGTTGTCTTGAGATCTGCTCC---CTCCATGCCCTTGCTGGTG-CTGATGGTGCAC----CTTAGGCTTAGTTGAGGGAC--TGCTTTGTGTAAG----------------------------------------------------------------------------------------------------------------------------------------------CTTGGCCT----------CCCCA------------------------GGTGATGGCAG-------------------CCCAGGTCTATTCCTAGGGCTACATTTTGTTGTGTGAAATAGATGAATTCTGTTGAGTCCGTTC---- i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38382109 691 + 135000294 AAAGATCTTCAGT--GTTTCTTCTTATGCTGTCAT--TTCTCTTTCTAAAAATTGATGGTAATGAAAAAACCTAGTTAATTGGGGGTTATACTTAGTAGGGGGTTTCAACTGA-----------------------------------------------AAGTTTCACCTGAG--GTTTAGGAGAACTTGGGGT------------TGA-------ATGTTTAGT--------------ACTTTCCGCTTG---TCCTTTAATTA-GGATTCTGAACCAGAAATCCATGGACACCTTGGGGATCCAGGGGCAGGTTTCAAGGGAGTCCGTGAACCTACGGAAATTGTGGGCAACCTTTGAGTGTGTCCCCTTCTTTGCTCAGTTGGCAGATGTGAATGGAGTCATTGAGGAGGAGTTTACCATGGCCCGCCTGTACATCAGCAAGATGAAGTCAGAGGTCAAGTCCCTGGTGAACCGCAGTAAACAGCTTGAGAGCGCCCAGATGGACTCCAACAGGAAGATGAACGCCAGCGAGCGGGAGCTGGCAGCCTGCCAGCTGCTCATCTCCCAGGTGGGCCTTTCCCTTCCCCCTCATTGCACACTCTTGTTGTCTTGAGATCTGCTCC---CTCCATGCCCTTGCTGGTG-CTGATGGTGCAC----CATGGGCTTAGTTGATGGACTTTGCTTTGTGTCAG----------------------------------------------------------------------------------------------------------------------------------------------CTTGGCCT----------CCCCA------------------------GGCGATGGCAG-------------------CCCAGGTCTATTCCTAGGGCTACATTTTGTTGTGTGAAATACACGAATTCTGTTGAGTGCTTTC---- i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82334555 690 - 85365473 AAAAATCTTCAGT--GTTTCTTCTTATGCTGTCAT--TTCTCTTTCTAAAAATTGATGGTAATG-AAAAACCTAGTTAATTGAGGATTATATTTAGTAGGGGGTTTCAACTGA-----------------------------------------------AAGTTTCACCTGAG--GTTTAGGAGAAGTTGGGGT------------TGA-------ATGTTTAGT--------------ACTTTACGCTTG---TCCTTTAATTA-GGATTCTGAACCAGAAATCCATGGATACCTTGGGCATCCAGGGGCAGGTTTCAAGGGAGTCTGTGAACCTGTGGAAATTGTGGGCAACATTTGAGTGTGTCCCCTTCTTTGCTCAGTTGGCAGATGTGAATGGAGTCATTGAGGAGGAGTTTACCATGGCCCGCCTATACATCAGCAAGATGAAGTCAGAGGTCAAGTCCCTGGTGAACCGCAGCAAACAGCTCGAGAGCGCCCAGATGGACTCCAACAGGAAGATGAACGCCAGCGAGCGGGAGCTGGCCGCCTGCCAGCTGCTCATCTCCCAGGTGGGCCCTTCCCTTCCCCCTCATTGCACACTCCTGTTGTCTTGAGATCTGCTCC---CTCCATGCCCTTGCAGGTG-CTGATGGTACGC----CATAGGCTTAGTTGATGGACTTCACTTTGTGTAAG----------------------------------------------------------------------------------------------------------------------------------------------CTTGGCCT----------ACCCA------------------------GGTGATGGCAG-------------------CCCAGGTCCATTCCTAGGGCTACATTTTGTTGTGTGAAATACATGAATTCTGTTGAGTCCTTTC---- i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11945919 673 + 106825570 AAAAATCTTCAGT--GTTTCTTCTTATGCTGTCA------TCTCTCTAAAAATTGATGGTAATG-AAAAACCTAATTAATTGAGGATTATATTTAGTAGGGGGTTTCAACTGA-----------------------------------------------AAGTTTGACCTGAG--GTTTAGGAGAACGTGGGGT------------TGA-------ATGTTTAGT--------------ACTTTCCGCTTG---TCCTTTAATTG-GGATTCTGAACCAGAAATCCATGGACaccttggggatctaggggcaggtttcaggggagtccgtgaacctacagaaattgtgggcaacatttGAGTGTGTCCCCTCCTGTGCTCAGTTGGCAGATGTGAATGGAGTCATTGAGGAGGAGTTTACCATGGCCCGCCTGTACATCAGCAAGATGAAGTCAGAGGTCAAGTCCCTGGTGAACCGCAGCAAACAACTCGAGAGTGCCCAGATGGACTCCAACAGGAAGATGAACGCCAGCGAGCGGGAACTGGCAGCCTGCCAGCTGCTCATCTCCCAGGTGGGCCCTTCCCTTCCCCCTCATTG-------------TCTTGAGATCTGCTGC---CTCCATGCCCTTGCTGGTG-CTGATGGTGCGC----CATAGGCTTAGTTGATGGACTTTGCTTTGTGTAAG----------------------------------------------------------------------------------------------------------------------------------------------CTTGGCCT----------CCCCA------------------------GGCGATGGCAG-------------------CCCAGGTCTCTTCTTAGAGCTACATTTTGTTGTGAGAAATACATGACTTCTGATGAGTCGTTTC---- i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37650003 673 + 132586672 AAAAATCTTCAGT--GTTTCTTCTTATGCTGTCA------TCTCTCTAAAAATTGATGGTAATG-AAAAACCTAATTAATTGAGGATTATATTTAGTAGGGGGTTTCAACTGA-----------------------------------------------AAGTTTGACCTGAG--GTTTAGGAGAACGTGGGGT------------TGA-------ATGTTTAGT--------------ACTTTCCGCTTG---TCCTTTAATTG-GGATTCTGAACCAGAAATCCATGGACaccttggggatctaggggcaggtttcaggggagtccgtgaacctacagaaattgtgggcaacatttGAGTGTGTCCCCTCCTGTGCTCAGTTGGCAGATGTGAATGGAGTCATTGAGGAGGAGTTTACCATGGCCCGCCTGTACATCAGCAAGATGAAGTCAGAGGTCAAGTCCCTGGTGAACCGCAGCAAACAACTCGAGAGTGCCCAGATGGACTCCAACAGGAAGATGAACGCCAGCGAGCGGGAACTGGCAGCCTGCCAGCTGCTCATCTCCCAGGTGGGCCCTTCCCTTCCCCCTCATTG-------------TCTTGAGATCTGCTGC---CTCCATGCCCTTGCTGGTG-CTGATGGTGCGC----CATAGGCTTAGTTGATGGACTTTGCTTTGTGTAAG----------------------------------------------------------------------------------------------------------------------------------------------CTTGGCCT----------CCCCA------------------------GGCGATGGCAG-------------------CCCAGGTCTCTTCTTAGAGCTACATTTTGTTGTGAGAAATACATGAATTCTGATGAGTCGTTTC---- i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11307215 672 + 104110932 aaaaatcttcagt--gTTTCTTCTTATGCTGTCA------TCTCTCTAAAAATTGATGGTAATG-AAAAACCTAATTAATTGAGGATTATATTTAGTAGGGGGTTTCAACTGA-----------------------------------------------AAGTTTGACCTGAG--GTTTAGGAGAACGTGGGGT------------TGA-------ATGTTTAGT--------------ACTTTCCGCTTG---TCCTTTAATTG-GGATTGTGAACCAGAAATCCATGGACACCTTGGGGATCCAGGGGCAGGTTTCAGGGGAGTCCGTGAACCTACAGAAATTGTGGGCAACATTTGAGTGTGTCCCCTCCTGTGCTCAGTTGGCAGATGTGAATGGAGTCATTGAGGAGGAGTTTACCATGGCCCGCCTGTACATCAGCAAGATGAAGTCAGAGGTCAAGTCCCTGGTGAACCGCAGCAAACAACTCGAGAGTGCCCAGATGGACTCCAACAGGAAGATGAACGCCAGCGAGCGAGAACTGGCAGCCTGCCAGCTGCTCATCTCCCAGGTGgg-ccttcccttccccctcatTG-------------TCTTGAGATCTGCTGC---CTCCATGCCCTTGCTGGTG-CTGATGGTGCGC----CATAGGCTTAGTTGATGGACTTTGCTTTGTGTAAG----------------------------------------------------------------------------------------------------------------------------------------------CTTGGCCT----------CCCCA------------------------GGCGATGGCAG-------------------CCCAGGTCTCTTCTTAGAGCTACATTTTGTTGTGAGAAATACATGAATTCTGATGAGTCGTTTC---- i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34406152 672 + 128595539 AAAAATCTTCAGT--GTTTCTTCTTATGCTGTCA------TCTCTCTAAAAATTGATGGTAATT-AAAAACCTAATTAATTGAGGATTATATTTAGTAGGGGGTTTCAACTGA-----------------------------------------------AAGTTTGACCTGAG--GTTTAGGAGAACTTGGGGT------------TGA-------ATGTTTAGT--------------ACCTTCCGCTTG---TCCTTTAATTG-GGATTCTGAACCAGAAATCCATGGACaccttggggatccaggggcgggtttcaggggagtccgtgaacctacagaaattgtgggcaacattttagtgtgt-CCCTCCTGTGCTCAGTTGGCAGATGTGAATGGAGTCATTGAGGAGGAGTTTACCATGGCCCGCCTGTACATCAGCAAGATGAAGTCAGAGGTCAAGTCCCTGGTGAACCGCAGCAAACAACTCGAGAGTGCCCAGATGGACTCCAACAGGAAGATGAACGCCAGCGAGCGGGAACTGGCAGCCTGCCAGCTGCTCATCTCCCAGGTGGGCCCTTCCCTTCCCCCTCATTG-------------TCTTGAGATCTGCTGC---CTCCATGCCCTTGCTGGTG-CTGATGGTGCGC----CATAGGCTTAGTTGATGGACTTTGCTTTGTGTAAG----------------------------------------------------------------------------------------------------------------------------------------------CTTGGCCT----------CCCCA------------------------GGCGATGGCAG-------------------CCCAGGTCTCTTCTTAGAGCTACAATTTGTTGTGAGAAATACATGAATTCTGATGAGTCCTTTC---- i chlSab2.chr10 C 0 I 260 s calJac3.chr6 87892238 688 - 158406734 aaaaaTCTTCAGT--GTTTCTTCATAAACTGTCAT--CTCTCTTTCTAAAAATTGATGGCAATG-AAAAACTTAGTTAATTGAGGATTATATTTAGTAGGGGGTTTCAACTGC-----------------------------------------------AAGTTTCACCTGAG--GTCTAGGAGAACTT-GGGT------------TGA-------TGGTTTAGT--------------AGTTTCAGCTTG---TCCTTTAATTA-GGATTCTGAACCAGAAATCCACAGATATCTTGggggtccagaggcaggtttcaggggaatccatgaacctacagaaattgtgggcagcatttGAGCTTGTCCCCTCCTGTGCTCAGTTGGCAGATGTGAATGGAGTCATTGAGGAGGAGTTTACCATGGCCCGCCTGTACATCAGCAAGATGAAGTCAGAGGTCAAGTCCTTGGTGAACCGAAGCAAACAGCTTGAGAGTGCCCAGATGGACTCCAATAGGAAGATGAATGCCAGCGAGCGGGAGCTGGCAGCCTGCCAGCTGCTCATCTCACAGGTGGGTCCTTCTCTTCCCT-TCCTTGTATATTCTTGTCCTCTTGCGATCTGCTCC---CTCCATGCCCTTGCTGGTG-CTGACGGTGCAC----CGTAGCCTTGGTTGATGAACTTTGCTTTGCGTAAG----------------------------------------------------------------------------------------------------------------------------------------------CTTGGCAT----------CCCCA------------------------GGGGATGGCAG-------------------CCCAGGTCTATTCCTAGGACTACATTTTGTCTGGAGAATTACATGAATTCCACTGAGTCCTTTC---- i calJac3.chr6 I 308 C 0 s mm10.chr2 49735168 852 + 182113224 TAAATTCTTCAAT--AGTTTTTCTTCTCGTATCAT-CCTTTCTATCCTCAAATCGGTTATAAGG-AAGTGTATGGTTAACAGAGGAGCACGTTTGAT-GTGGGTTTTGGTGGG-----------------------------------------------AACTTTCTTGTGTGCAATCTCTGAGGACTTGATGG------------TGACTTCGACATGT---AT--------------GTTTTTGGCTTC---CCCTGTGGCTA-CAATGTTTGCCCC-AAAGCTAGGGCTGTCTCAGGGACCCATGGTTAGGGTTCACAG------------------------------ACTTCTGA---TGTGTCCTTCTGTGCTCAGCTGGCAGATGTGAACGGGGTCATTGAGGAGGAGTTCACCATGGCACGCCTGTACATTAGCAAGATGAAGTCGGAGGTCAAGTCTCTCGTGAACCGCAGCAAGCAGCTGGAGAGTGCCCAGATGGACTCTAACAGGAAGATGAACGCCAGTGAGCGCGAGCTGGCAGCGTGCCAGTTGCTTATCTCACAGGTAGGCTATCCATTGGACCCTGTTCACGAGCATC-----CATTGAGGTCTGCCCCTGATCCGGTGCCCTTCTCAGGG-TTAATAGTGCGT----ACTAGGGAGAGCCAGTGCACTCGGCCTTATATGAGTGGGCCTTAAGATAGCCCACAGTCCtcttgtgtttctgaaacaaagattccactttgtagctgggattatccttgaactcatcctcctcctAAAGTGGGACGTAGTGGGACGGTCTGATGCTGCTTGTAGTCCAAGATTAGTCTTGACCTCTTTTCTCAGCCCCACCCCTCACCCCGTACTCGAATATGGGTGATTGGTGTGAATTGCCAAGCCTGGTCTCTGGGTTTATCCTTAAACCTAGATTTTGTTGTGTAAATTACACAAACCCC-TCAAGGCTTC------ i mm10.chr2 C 0 C 0 s canFam3.chr19 50648731 780 + 53741614 -AAAATCTTCAGCTATCTTTTCCTTCTGATGTCCTGTCTTTCATCCTAAAAATTAAGTGTAATG-AAAAACCTGGATGGTGGAGAATTACATTTAGTAGATGattttattttattttattatttttttttttttttattttttAGTAGATGATTTTAGTTCACTCTTACCCAAG--GTTTCAGAAAACTTGGGATATATTAATATACTGA-------ATATATAGTAAATTTTAGCTATCATTTTCAGCTTGTGATCCTATGTTTAGGGATCCCTAATCAGAAATCCAAAGACATCTTGAGGATCCATAGAGAGATTTTA-GGGTCCCCGTGAATCTCTGGAAGTTGTAAGCAATAGTTGAATGCACTCCTTCCTGTGCTCAGTTGGCAGATGTGAATGGAGTCATTGAGGAGGAATTCACCATGGCCCGCCTATATATCAGCAAGATGAAGTCGGAGGTCAAATCCCTGGTGAACCGCAGCAAACAGCTGGAGAACGCCCAGATGGACTCCAACAGGAAGATGAATGCCAGTGAGCGGGAGCTAGCAGCCTGCCAGCTGCTCATCTCCCAGGTAGGTCACCCCTTCCGCCCTCGTTTCACTCCCTTGACCTCCTGAAATCTGCTTC---CTCTGTGTTCTCGCTGGGGTCTGATGGTGCATGATAGATAGGGTTAGGTGATGGACTTTGCCTTACGTTAA---------------------------------------------------------------------------CACTTACC-----------------------------------------------------------CATGGCCT----------CCCCG------------------------GGCAATGACAG-------------------CCCAGGCTTATTCTTGAGGCTAGATCGTGTTGCACGAATTACAGGAATT------ACCTCCTTCAGGC i canFam3.chr19 C 0 C 0 a score=29183.000000 s hg38.chr2_GL582966v2_alt 63415 30 + 96131 CCTTTTTCGAGGATATATCTATCTACCCAT---------- s panTro4.chr2B 153176208 30 + 247518478 CCTTTTTCGGGGATATATCTATCTACCCAT---------- i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38382800 30 + 135000294 CCTTTTTAGAGGATATATCTATCTACCCAT---------- i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82335245 30 - 85365473 CCTTTTTAGAGGATATATCTATCTACCCAT---------- i nomLeu3.chr20 C 0 C 0 s calJac3.chr6 87892926 30 - 158406734 CATTTTTAGAGGATATATCTATCTACCCAT---------- i calJac3.chr6 C 0 C 0 s mm10.chr2 49736020 30 + 182113224 TCTGTCTTCAAAGTGTCTCGATTTCTCTGC---------- i mm10.chr2 C 0 C 0 s canFam3.chr19 50649511 40 + 53741614 CCTTTTTAAAGGATGTGTCTACATGTCTCTATATACAAAT i canFam3.chr19 C 0 C 0 e macFas5.chr12 37650676 0 + 132586672 C e chlSab2.chr10 34406824 260 + 128595539 I e papAnu2.chr12 11307887 0 + 104110932 C e rheMac3.chr12 11946592 0 + 106825570 C a score=1624946.000000 s hg38.chr2_GL582966v2_alt 63445 472 + 96131 CCATAGATGGATGGCTAGCTAGCT---------AATGAATGTAAAAGATTGGGTGGAATCTCTAAAACTCCTGTAAG-TAAGGCAATATTCCCTCATCTTTTAATCTCTACCATAGGTCCACTTTAATATGGAAAAACAGAAACTA-------------CTACTAATAGTAGTAGTAGCAGGTGGCATtttattgagtgtttactatgtaccatacactgtgctaagtacttcacatgcattttctcacttaatc-tgaaaaaaatcctggtaggcaggttttatt--attattcc------tca---gataggcagctgagatttagactaaatgtc-tgtccaaacacctacagcccgtgaatgacagagctagg--actc-aaa--aaaatgtgtgtgaacccaaaacccatgtcttCAAGGGCTTTTCAAGCCCGAGGGTACATTTCACTTGCCTATTGAGTAAGGCTGCTCTTCTTCCTATTGGAGTGGCATTTTCAGTTTAATAAGG s panTro4.chr2B 153176238 472 + 247518478 CCATAGATGGATGGCTAGCTAGCT---------AATGAATGTAAAAGATTGGGTGGAATCTCTAAAACTCCTGTAAG-TAAGGCAATATTCCCTCATCTTTTAATCTCTACCATAGGTCCACTTTAATATGGAAAAACAGAAACTA-------------CTACTAATAGTAGTAGTAGCAGGTGGCATtttattgagtgtttactatgtaccatacactgtgctaagtacttcacatgcattttctcacttaatc-tgaaaaaaatcctggtaggcaggttttatt--attattcc------tca---gataggcagctgagatttagactaaatatc-tgtccaaacacctacagccagtgaatgacagagctagg--actc-aaa--aaaatgtgtgtgaacccaaagcccatgtcttCAAGGGCTTTTCAAGCCCGAGGGTACATTTCACTTGCCTGTTGAGTAAGGCTGCTCTTCTTCCTATTGGAGTGGCATTTTCAGTTTAATAAGG i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38382830 472 + 135000294 CCATAGATGGATGGCTAGCTAGCT---------AATGAATGTAAAAGGTTGGGTGGAATCTCTGAAACTCCTACAAG-TAAGGCAATATTCCCTCATCTTTTAATCTCTACCATAGGTCCACTTTAATGTGGAGAAACAGAAACTA-------------CTAATAATAGTAGTAGTAGCAGGTGGCATtttattgagtgtttactatgtaccatacactgtgctaagtacttcacatgcattttctcacttaatc-ttaaaaaaatcctggtaggcaggttttatt--attattcc------tca---gataggcagctgagatttagattaaatgta-tgtccaaacacttacagccagtgaatgacagagctggg--actc-aaa--aaaatgtgtgtgaacccaaagcccatgtcttCAAGGGCTTTTCAAGCCCGAGGGTACATTTCACTTGCCTATTGAGTAAGGCTGCTCTTCTTCCTATTGGAGTGGCATTTTCAGTTTAATAAGG i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82335275 474 - 85365473 CCATAGATGGATGGCTAGCTAGCT---------AATGAATGTAAAAGATTGGGTGGAATCTCTAAAACTCCTATAAG-TAAGGCAATATTCCCTCATCTTTTAATCTCTACCATAGGTCCACTTTAATATGGAAAAACGGAAACTA-------------CTAATAATAGTAGTAGTAGCAGGTGGCATtttattgagtgtttactatgtaccatacactgtgctaagtacttcacatgcattttctcacttaatc-ttaaaaaaatcctggtaggcaggttttatt--attattcc------tcagatgataggcagctgcgatttagattaaatata-tgtccaaacacctacagccagtgaatgac-gagctggg--actc-aaa--aaaatgtgtgtgaacccaaagcccatgtcttccAGGGCTTTTCAAGCCCGAGGGAACATTTCACTCGCCTGTTGAGTAAGGCTGCTCTTCTTCCTATTGGAGTGGCATTTTCAGTTTAATAAGG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11946592 478 + 106825570 CCATAGATGGATGGCTAGCTAGCT---------AATGAATGTAAAAGATTGGGTGGAATCTCTAAAATTCCTATGAG-TAAGGCAATATTCCCTCATCTTTTAATCTCTACCATAGGTCCACTTTAATATGGAAAAAC--AAACTA-------------CTACTAGTAGTAGTAGTAGCAAGTGGCATtttattgagcttttactatgtaccatataccgtgctaagtacttcacatgcattttctcacttaatc-ttaaaaaaatcctggtaggcaggttttatt--attattcctctgtttca---gacaggcagctgagatttagattaaatata-tgtccgaacacctacagccagtgaatgacagagctgggctactc-aaa--aaaatgtgtgtgaacccaaagcccatgtcttCAGGGGCTGTTCAAGTCCCAGGGCACATTTCACTTGCCTATCGAGTAAGGCTGCTCTTCTTCCTATTGGAGTGGCATTTTCAGTTTAGTAAAG i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37650676 478 + 132586672 CCATAGATGGATGGCTAGCTAGCT---------AATGAATGTAAAAGATTGGGTGGAATCTCTAAAATTCCTATGAG-TAAGGCAATATTCCCTCATCTTTTAATCTCTACCATAGGTCCACTTTAATATGGAAAAAC--AGACTA-------------CTACTAGTAGTAGTAGTAGCAAGTGGCATtttattgagcttttactatgtaccatataccgtgctaagtacttcacatgcattttctcacttaatc-ttaaaaaaatcctggtaggcaggttttatt--attattcctctgtttca---gacaggcagctgagatttagattaaatata-tgtccgaacacctacagccagtgaatgacagagctgggctactc-aaa--aaaatgtgtgtgaacccaaagcccatgtcttCAGGGGCTGTTCAAGTCCCAGGGCACATTTCACTTGCCTATCGAGTAAGGCTGCTCTTCTTCCTATTGGAGTGGCATTTTCAGTTTAGTAAAG i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11307887 478 + 104110932 CCATAGATAGATGGCTAGCTAGCT---------AATGAATGTAAAAGATTGGGTGGAATCTCTAAAATTCCTATGAG-TAAGGCAATATTCCCTCATCTTTTAATCTCTACCATAGGTTCACTTTAATATGGAAAAAC--AAACTA-------------CTACTAATAGTAGTAGTAGCAAGTGGCATTTTATTGAGCGTTTACTATGTACCATATACTGTGCTAAGTACTTCACATGCATTGTCTcacttaatc-tttaaaaaatcctGGTAGgcaggttttatt--attattcctctGTTTCA---GACAGGCAGCTGAGATTTAGATTAAATATA-TGTCCGAACACCTACAGACAGTGAATGACAGAGCTGGGCTACtc-aaa--aaaatgtgtgtgaaCCCAAAGCCCATGTCTTCAGGGGCTGTTCAAGTCCCAGGGCACATTTCACTTGCCTATCGAGTAAGGCTGCTCTTCTTCCTATTGGAGTGGCATTTTCAGTTTAGTAAAG i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34407084 478 + 128595539 CCATAGATGGATGGCTAGCTAGCT---------AATGAATGCAAAAGATTGGGTGGAATCTCTGAAATTCCTATGAG-TAAGGCAGTATTCCCTCATCTTTTAATCTCTACCATAGGTCCACTTTAATATGGAAAAACAGAAACTA-------------CTACTAATAGTAGCATTAGCAAGTGGCATtttattgagcgtttactatgtaccatacaccgtgctaagtacttcacatgcattttctcacttaatc-ttaaaaaaatcctggtaggcaggtt---tt--attattcctctgtttca---gacaggcagctgagatttagattaaatata-tgtcctaacacctacagccagtgaatgacagagctgggctactcaaaa--aaaatgtgtgtgaacccaaagcccatgtcttCAGGGGCTGTTCAAGTCCAAGGGCACATTTCACTTGCCTATTGAGTAAGGCTGCTCTTCTTCCTATTGGAGTGGCATTTTCAGTTTAGTAAAG i chlSab2.chr10 I 260 I 186 s calJac3.chr6 87892956 449 - 158406734 CCATAGATGTATGGATGGCTGGTT---------AATGAATGTAAAACATTGGGTGGAATATCTAAAATGCCTATAAG-TAAGGCAATATTCCTTCATCTTTTAATCTCTACCATAGGTCCACTTTAATATGAAAAAACAGAAACTG-------------C------TAGTaatagtagcagatggcattttattgagcgtttactatataccattcactgtgcca----------------tttctcacttaatc-ttaaaaaaattctggtaggtaagttttatt--attattcctctgtttca---gataggctgctgagatttagattaaatatattgtccaaaca----------gtgaatgacagagctggg--actc-aaacgaaaatgtgtgtgaacccaaagcccatgtcttCAAGGGTTTTTCAAGCCCGAGGGCACATTTCGCTTCCTTATTGCCTAAGGCTGCTCTTCTTCCTATTGGAGTGGCATTTTCAGTTTAGTAAGG i calJac3.chr6 C 0 C 0 s mm10.chr2 49736050 397 + 182113224 CCACTCATGGATGGCTTTGTAGT------------TGAGCATATATGAT------GTATCTTTAAGTCTCCTATTAG-CGCGGGAAGATTCCTACATCTGTAAATCCCTACCATGGGAGCAGTATAAGATGTATGGGTAGAAACTA-------------CTGT---GGGTGGTGGTGGCAGGTGCTGTTGCACT--GTTTTTCACATGTA-CACACAACAT---AAACATGTCATGTGCATTTTCTTGCATGATC-TTTAAAAAGTTTT-GTAGGGAGATTTTATTTATTTATTTT------TCA---AATAA--AGGTATGATTGTGATTAAATACT-TTGCAAAAT-------------------------------ACAC-GAC--G--------GTGAA------------GTCT----GGGTTTCTCAAGCTC-AGGGCATGTGTC-CTTGATGAGCTAGCAAGCCAGCTCTT-TCCCCATTGGAATGGCGTTTCCATCTCAGGAAGG i mm10.chr2 C 0 C 0 s canFam3.chr19 50649551 487 + 53741614 ACgtaggaaggtaggtaggtaggtagAGATTACAAGGAATGGATGAGGTTGGGTGGAA--TCTAAAACTCCTATGGGCTAAGGCAACG-TCCTTCACCTTTTAGTCTCTACCACGAGTTCAATTTCATCTGTGAAAACGGAAACTATTTGCTATTCCTGCTGTCATTACTaatagtagcaagtgacattttattgagtgtttacaatgctccatacgctgcactaagcacctcatgtgcattatctcacttgatctttaaaaaagtcctggtgggcaggttttatt--attatgcctgtttttca---ga-------ctcaga--aagattaaatataccgttcaaactcatatagccagcgaaaggcagatctggg--actc-aaaccaaagcatgtgtgaacacaaagc------cTTGAAGGGATTTTCAGGCTCCAGGGCACATTTCATCTGCTCAGTGAGTAAGGCTGCTCGTCTGCCCATTGAAAGGGCGTTTTCATTTTAGTAAGG i canFam3.chr19 C 0 C 0 a score=732506.000000 s hg38.chr2_GL582966v2_alt 63917 206 + 96131 TAGCTTCAGAAAACAGCAACCCAGTTTCTGGGCTACCACTGATATCTGAGCTTGGTATTT-GGGTCTGACGTTTCCAGGAGGGGTCTAGTTGTATACTACTTGCTGCTTTATGCCAGGCATTAAAATAG--GCTGTCATTTGGAGTAAACAGGAAACAGATACCAACATGGATTGGTGTGTCAAATAATACTGAG--GCGGACAAAAGCAC s panTro4.chr2B 153176710 206 + 247518478 TAGCTTCGGAAAACAGCAACCCAGTTTCTGGGCTACCACTGATATCTGAGCTTGGTATTT-GGGTCCGACGTTTCCAGGAGGGGTCTAGTTGTATACTACTTATTGCCTTATGCCAGGCATTAAAATAG--GCTGTCATTTGGAGTAAACAGGAAACAGATACCAACATGGATTGCTGTGTCAAATAATACTGAG--GCGGACAAAAGCAC i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38383302 206 + 135000294 TAGCTTCAGAAAACAGCAACCCAGTTTCTGGGCTACCACTGATATCTGAGCTTGGTATTT-GGGTCTGACGTTTCCAGGAGGGGTCTAGTTGTATACTACTTACTGCCTTATGCCAGGCATTAAAATAG--GCTGTCATTTGGAGTAAACAGGAAACAGATGCCAACATGGATTGGTGTGTCAAATAATACTGAG--GTGGACAAAAGCAT i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82335749 206 - 85365473 TAGCTTCAGAAAACAGCAACCCAGTTTCTGGGCTACCACTGATATCTCAGCTTGGTATTT-GGGTCTGACGTTTCCAGGAGGGGTCTAGTTGTATACTACTTGCTGCCTTATGCCAGGCATTAAAATAG--GCTGTCATTTGGAGTAAACAGGAAACAGATACCAACATGGATTGGTGTGTCAAATAATACTGAG--GCGGACAAAAGCAT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11947070 206 + 106825570 TAGCCTCAGAAAACAGCAACCCAGTTTCTGGGCTACCACTGATATCGGAGCTTGGTATTT-GGGTCTGGCGTTTCCAGGAGGGGTCTAATTGTACACTACTTACTGCCTTATGCGAGGCATTAAAATAG--GCTGTCATTTGGAGGAAACAGGAAACGGATACCAACATGGATTGGTGTGTCAAATAATACTGAG--GCGGACAAAAGCAT i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37651154 206 + 132586672 TAGCCTCAGAAAACAGCAACCCAGTTTCTGGGCTACCACTGATATCGGAGCTTGGTATTT-GGGTCTGGCGTTTCCAGGAGGGGTCTAATTGTACACTACTTACTGCCTTATGCGAGGCATTAAAATAG--GCTGTCATTTGGAGGAAACAGGAAACGGATACCAACATGGATTGGTGTGTCAAATAATACTGAG--GCGGACAAAAGCAT i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11308365 205 + 104110932 TAGCCTCGGAAAACGGCAACCCAGTTTCTGGGCTACCACTGATATCGGAGCTTGGTATTT-GGGTCTGGCGTTTCCAGGAGGGGTCTAATTGTTCACTACTTACTGCCTTATGCCAGGCATTAAAATAG--GCTGTCATTTGGAGGAAACAGGAAAT-GATACCAACATGGATTGGTGTGTCAAATAATACTGAG--GCGGACAAAAGCAT i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34407748 206 + 128595539 TAGCCTCAGAAAACAGCAACCCAGTTTCTGGGCTACCACTGATATCGGAGCTTGGTATTT-GGGTCTGGCGTTTCCAGGAGGGGTCTAATTGTACACTACTTACTGCCTTATGCCAGGCATTAAAATAG--GCTGTCATTTGGAGGAAACAGGAAACGGATACCAACATGGATTGGTGTGTCAAATAATACTGAG--GCAGACAAAAGCAT i chlSab2.chr10 I 186 I 239 s calJac3.chr6 87893405 202 - 158406734 TAACTTCAGAAAACAGCAACCCAGTTTCTGGACTACCACTGTTATCTGAGCTTGGTATTT-GGGTCTGACGTTTCCAGGAGGGGTCTAGTTGTATGCTACTTACTGCCTTATGCCAGGCATTAAAATA------GTCATTTCGAGGAAGCAGGAAACAGATACCAACGTGGATTGGTGTGTCAAGTAATACGGTG--GCAGACAGAAGCCT i calJac3.chr6 C 0 C 0 s mm10.chr2 49736447 174 + 182113224 TAGC-TCAGAGGACCATGGGACAG-TTCTGGGCTG-CACGGACATGTAAGCTT-ACATTT-GGGTTTGAGATTTCCAAGACGGTACCAG-TGTGTGCTGTTCACCACCTCATAGCTGA----------------GTCGTTTGG--------GGAAATGGGTACCAGTGTGGACTGGCATGTCTAACAGTGCCAAG-------CAGCAGGGC i mm10.chr2 C 0 C 0 s canFam3.chr19 50650038 201 + 53741614 TGGTTTCAGAAAACAGCGGCCTAGTTTCTGGTCTGCCACTGATACCTGAGCTTGGTGTTTGGGGTTTGAGGCTTCTGTGAGTATTGCAG-TGCAGGCTGCTCTCTGCCTTACACCAGGCATTAAGACAGCTGAAATCATTTG-------CGGGAAACTAATAAGAGCATGGAACAGTGTATCAAATAATACCGAGAGACGGACAAAAAC-- i canFam3.chr19 C 0 C 0 a score=995211.000000 s hg38.chr2_GL582966v2_alt 64123 282 + 96131 ACTTTATTCTGGTATGCTTTTAACCATAATAATGTGTAATCATAGAAACATCTCCAACCTCTCTGTCTA------------------------AAATGGATCCACAagg-ttccattttataaccagcataataagcagaaatgtattgaaaagattattcagtgctaatatgtgatagtaaaattgatatattcatacattgttgataaaagtataatttggtcagtccttttgggaagcaccgtggaaatcagaaaccataaaaa-------------------------tgtaagtataat----------------------------------------------------------------------------------------------------ttagtccagtaatt------------------------------------------------------------------------------------tcactgacagtatt s panTro4.chr2B 153176916 282 + 247518478 ACTTTATTCTGGTATGCTTTTAACCATAATAATGTGTAATCATAGAAACATCTCCAACCTCTCTGTCTA------------------------AAATGGATCCACAagg-ttccattttataaccaacataataagcagaaatgtattgaaaagattattcaatgctaatgtgtgatagtaaaattgatatattcatacattgttgataaaagtataatttggtcagtccttttggaaagcaccgtggaaatcagaaaccataaaaa-------------------------tgtaagtataat----------------------------------------------------------------------------------------------------ttagtccagtaatt------------------------------------------------------------------------------------tcactgacagtatt i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38383508 282 + 135000294 ACTTTATTCTAGTATGCTTTTAACCATAATAATGTGTAATCATAGAAACATCTCCAACCTCTCTGTCTA------------------------AAATGGATCCACAAGG-TTCCATTTTATAACCAACATAATAAGCAGGAATGTattgaaaagattattcaatgctaatgtgtgatagtaaaattgatatattcatacattgttgataaaagtataatttggtcagtccttttggaaagcaccgtggaaatcagaaaccataaaaa-------------------------tgtaagtataat----------------------------------------------------------------------------------------------------ttagtccagtaatt------------------------------------------------------------------------------------tcactgacagtatt i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82335955 282 - 85365473 ACTTTATTCTGGTATGCTTTTAACCATAATAATGTGTAATCATAGAAACATCTCCAACCTCTCTGTCTA------------------------AAATGGATCCACAagg-ttccattttataaccaacataataagcagaaatgtattgaaaagcttattcaatgctaatgtgagatagtaaaattgatatattcatacattattgataaaagtataatttggtcagtccttttggaaagcaccatggaaatcagaaaccataaaaa-------------------------cgtaagtagaat----------------------------------------------------------------------------------------------------ttagtccagtaatt------------------------------------------------------------------------------------tcactgacagtatt i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11947276 282 + 106825570 ACTTTGTTCTGGTGTGCTTTTAACCATAATAATGTGTAATCACAGAAACATCTCCAACCTCTCTGTCTA------------------------AAATGAATCCACAagg-ttccattttataaccaacataataagcagaaatgtattgaaaagattattccgcgctaatgtgtgatagtaaaatcgatatattcatacattgttgagaaaagtataatttggtcagtccttttggaaagcactgtggaaatcagaaaccataaaaa-------------------------tgtaagtataat----------------------------------------------------------------------------------------------------ttagtccagtaatt------------------------------------------------------------------------------------tcactGACAGTATT i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37651360 282 + 132586672 ACTTTGTTCTGGTGTGCTTTTAACCATAATAATGTGTAATCACAGAAACATCTCCAACCTCTCTGTCTA------------------------AAATGAATCCACAagg-ttccattttataaccaacataataagcagaaatgtattgaaaagattattccgcgctaatgtgtgatagtaaaatcgatatattcatacattgttgagaaaagtataatttggtcagtccttttggaaagcactgtggaaatcagaaaccataaaaa-------------------------tataagtataat----------------------------------------------------------------------------------------------------ttagtccagtaatt------------------------------------------------------------------------------------tcactgacagtatt i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11308570 282 + 104110932 ACTTTGTTCTGGTGTGCTTTTAACCATAATAATGTGTAATCACAGAAACATCTCCAACCTCTCTGTCTA------------------------AAGTGAATCCACAAGG-TTCCATTTTATAACCAACATAATAAGCAGAAATGTATTGAAAAGATTATTCCGCGCTAATGTGTGATAGTAAAATCGATATATTCATACATTGTTGAGAAAAGTATAATTTGGTCAGTCCTTTTGGAAAGCACTGTGGAAATCAGAAACCATAAAAA-------------------------TGTAAGTATAAT----------------------------------------------------------------------------------------------------TTAGTCCAGTAATT------------------------------------------------------------------------------------TCACTGACAGTATT i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34408193 282 + 128595539 ACTTTGTTCTGGTGTGCTTTTAACCATAATAATGTGTAATCACAGAAACATCTCCAACCTCTCTGTCTA------------------------AAATGAATCCACAagg-ttccattttataaccaacataataagcagaaatgtattgaaaagattattccacgctaatgtgtgatagtaaaatcgatatattcatacattgttgagaaaagtataatttggtcagtccttttggaaagcactgtggaaatcagaaaccataaaaa-------------------------tgtaagtataat----------------------------------------------------------------------------------------------------ttagtccagtaatt------------------------------------------------------------------------------------tcactGACAGTATT i chlSab2.chr10 I 239 C 0 s calJac3.chr6 87893607 282 - 158406734 ACTTTATTCTGGTGTGCTTTTAACCATAATGATATGTAATCATAGAAACATCTCCAACCTCCCTGTCTA------------------------AAATGGATCCACAAGG-TTCCATTTTATAACCAACATAATAAGCGAAAATGTGTTGAAAAGATTATTCAGTGCTAATGTGTGATAGTAAAATTGATATATtcatccattgttgataaaagtataatttggtcagtcctttggaaaagcaccatggaaatcagaaaccgcaaaag-------------------------tgtaagtataat----------------------------------------------------------------------------------------------------ttagtccagcaatt------------------------------------------------------------------------------------tcgctgACAGTATT i calJac3.chr6 C 0 C 0 s mm10.chr2 49736621 464 + 182113224 ATCAGATTGTGCTATGGCTTTAAACGTATGA---TGCAGTAACAGAAAGAGCTCCAACTTTCTTGTCTA------------------------AAATGGATTCTATGGG-TTGTTTTT----------ATATGAAGTGAAATATTATTTAAAGGGCACTTTAGTGCTGGTATGTGGTAG-AATGTTGATAAAC-------ATGATGAGA----TATAATTTAG-CAATCCTTTTGAAAA-CACTGGTAAAATATAAAACCAGAAAAAAAATACATACTTGGTGTTCTGTATGTGTGAGCTCAATACAGGTGTGCTCACAtgtatgtgcacatgtggagaccaaaggctggctttgggtactttcttctgctgcttttcttgtctactatatatgctcatgatgatgagtctagtgcttgtgttttggctagactggccaacaatcctctgggacccacctgtctttgtccatcctcagtactggggctgtaggcaaatgccaccactgtcagtttt i mm10.chr2 C 0 I 115 s canFam3.chr19 50650239 298 + 53741614 AGTCGGTCCTGGCATGCCTGTAAACACAGTAACGTGTCATCGCAGGCCCAGCTCGAGCCTCCGCGTCTCCCACCACAgtaatctaagacatgtaagtcaacacatcaggtttccgtttcataaccaacgtaacaggcaaaaatatattggaaagatgattcagtgttggtgtgtgatagtgaaatttatatac-------attctgagaaaagtataatttggtcagtccttttggaaagcaccttggggatcaaaaaccgtaaaga-------------------------tataagtac--t----------------------------------------------------------------------------------------------------ttggtccagtaatt------------------------------------------------------------------------------------tcacttACGGTAGT i canFam3.chr19 C 0 C 0 a score=234513.000000 s hg38.chr2_GL582966v2_alt 64405 59 + 96131 tttcattgttaatgaaaatg-aaaaaaattt----atttcatatggtattctcatttcctgatt s panTro4.chr2B 153177198 59 + 247518478 tttcattgttaatgaaaatg-aaaaaaattt----atttcatatggtattctcatttcctgatt i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38383790 59 + 135000294 tttcattgttaatgaaaatg-aaaaaaattt----atttcatatggtattctcatttcctgatt i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82336237 59 - 85365473 tttcATTGTTAATGAAAATG-AAAAAGATTT----ATTTCATATGGTATTCTCATTTCCTGATT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11947558 60 + 106825570 TTTCATTGTTAATAAAAATGAAAAAAAATTT----ATTTCATATGGTATTCTCATTTCCTGATT i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37651642 60 + 132586672 tttcATTGTTAATGAAAATGAAAAAAAATTT----ATTTCATATGGTATTCTCATTTCCTGATT i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11308852 59 + 104110932 TTTCAttgttaatgaaaatg-aaaaaaattt----atttcatatggTATTCTCATTTCctgatt i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34408475 60 + 128595539 TTTCATTGTTAATGAAAATGAAAAAAAATTT----ATTTCATATGGTATTCTCATTTCCTGATT i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87893889 59 - 158406734 TTTCATTGTTAATGAAAGTG-AAAAAAATTT----ATTTCATATGGTATTCTCATTTCTTGATT i calJac3.chr6 C 0 C 0 s mm10.chr2 49737200 59 + 182113224 TTTCATTGGTAATGGAGATG-----ACATTTTTAAATGTCATATGGCATTATAATTTTCTGATT i mm10.chr2 I 115 C 0 s canFam3.chr19 50650537 56 + 53741614 TTTCATTGGTTATGAAAATG-CAAAGATTCT----GTTTTGTATG---TTGTCATTTCCTGATT i canFam3.chr19 C 0 I 191 a score=679755.000000 s hg38.chr2_GL582966v2_alt 64464 172 + 96131 aaaaatattaaaagcttttatgcaaggtattgaagacagtgttattttgcattataataaaataaattgcccaaatatccattgatagactaataagataaagttacatggaataatattatgcagctcttataaaaaatgta-aaaacctagccattgggaaagtctaatgg s panTro4.chr2B 153177257 172 + 247518478 aaaaatattaaaagcttttatgcaaggtattgaagacagtgttattttgcattataataaaataaattgcccaaatatccattgatagactaataagataaagttacatggaataatattatgcagctcttataaaaaatgta-aaaacctagccattgggaaagtctaatgg i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38383849 172 + 135000294 aaaaatattaaaagcttttatgcaaggtattgaagacagtgttattttgcattataataaaataaattgcccaaatatccattgatagactaataagataaagttacatggaataatattatgcagctcttatagaaaatgta-aaaacctagtcattgggaaagtctaatta i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82336296 172 - 85365473 AAAAATATTCAAAGCTTTTATGCAAGGTATTGAAGACTGTGTTATTTTGCATTATAATAAAATAAATTGCCTAAATATCCATTGATAGACTAATAAGATGAAGTTACATGGAATAATATTATGCAGCTCTTATAAAAAATGTA-AAAACCTAGCCATTGGGAAAGTCTAATTA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11947618 172 + 106825570 AAAAATATTAAAAGCTTTTATGCAAGGTATTGAAGACAATGTTATTTTGGATTATAATAAAATAAATTGCCCAAATATCCACTGATAGACTAATAAGATAAAGTTACATGGAATAATATTATACAGCTCTTATAAAAAATGTA-AAAACCTAGCCATTGGGAAAGTCTAATTA i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37651702 172 + 132586672 AAAAATATTAAAAGCTTTTATGCAAGGTATTGAAGACAATGTTATTTTGGATTATAATAAAATAAATTGCCCAAATATCCACTGATAGACTAATAAGATAAAGTTACATGGAATAATATTATACAGCTCTTATAAAAAATGTA-AAAACCTAGCCATTGGGAAAGTCTAATTA i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11308911 172 + 104110932 aaaaatattaaaagcttttATGCAAGGTATTGAAGACAATGTTATTTtggattataataaaataaattgcccAAATATCCATTGATAGACTAATAAGATAAAGTTACATGGAATAATATTATGCAGCtcttataaaaaatgta-aaaacctagCCATTGGGAAAGTCTAATTA i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34408535 172 + 128595539 AAAAATATTAAAAGCTTTTATGCAAGGTATTGAAGACAATGTTATTTTGGATTATAATAAAATAAATTGCCCAAATATCCACTGATAGACTAATAAGATAAAGTTACATGGAATAATATCATACAGCTCTTATAAAAAATGTA-AAAACCTAGCCATTGGGAAAGTCTAATTA i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87893948 172 - 158406734 AAAAATA-TAAAAGCTTATACGCAAGGTATTGAAGACAGTGTTATTTTGCATTATAATAAAATAAATTGCCCAAATATCCATTGACAGACTAATAAGAGAAAGTTACGTGGAATAATATTATGCAGCTCTTATAAAAAATTTATAAAACCTAGCCATTGGGAAAGTCTAATTA i calJac3.chr6 C 0 C 0 s mm10.chr2 49737259 168 + 182113224 -AAAATATTAAAAGCTTATATGGAAACTATGGATG-CACTATTATTTGACATTATTGTAAAATACATTACCCAAATACCTGTTAATAGACAAAT--GATGAAGTTATGTGGAACAATATTACATAACACTGACAAAAATCCAT-AAAACTTGGGCATTTGGAAAGTGTAATTA i mm10.chr2 C 0 I 133 s canFam3.chr19 50650784 171 + 53741614 aaaaaTATGAAAAAATTCTATGAAAGATGTTGAGTGCAATATTACCT-ACGTTATGATGAAATAAAATACCCAGATATCTATTGATAGGCTAATGACCCAGCGTTACATGGAGGAATGCTACGTAGCTCTTGCAAAAATTTAC-AAAGCATAGCCGTTTGGGAAGTGTGGTTA i canFam3.chr19 I 191 C 0 a score=233225.000000 s hg38.chr2_GL582966v2_alt 64636 72 + 96131 tataaagttaagtgaaaatgaaaatgctgagttggatttatattgtgctt-----------------TGCATTCCTGCAGCTAAGACCA s panTro4.chr2B 153177429 72 + 247518478 tataaagttaagtgaaaatgaaaatgctgagttggatttatattgtgctt-----------------TGCATTCCTGCAGATAAGACCA i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38384021 72 + 135000294 tataaagttaagtgaaaaTGAAAATGCTGAGTTGGATTTATGTTGTGCTT-----------------TGCATTCCTGCAGATAAGACCA i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82336468 72 - 85365473 TATGAAGTTAAGTGAATATGAAAATGCTGAGTTGGATTTATGTGGTGCTT-----------------TGCATTCCTGCAGATAAGACCA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11947790 72 + 106825570 TATAAAGTTACGTGAAAATGAAAATGCTGAGTTAGATTTATGTTGTGCTT-----------------TGCATTCCTGCAGATAAGACCA i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37651874 72 + 132586672 TATAAAGTTACGTGAAAATGAAAATGCTGAGTTAGATTTATGTTGTGCTT-----------------TGCATTCCTGCAGATAAGACCA i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11309083 72 + 104110932 TATAAAGTTACGTGAAAATGAAAATGCTGAGTTAGATTTATGTTGTGCTT-----------------TGCATTCCTGCAGATAAGACCA i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34408707 72 + 128595539 TATACAGTTACGTGAAAATGAAAATGCTGAGTTAGATTTATGTTGTGCTT-----------------TGCATTCCTGCAGATAAGACCA i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87894120 72 - 158406734 TATAAAGTGAAGTGAAAATGAAAGTGCTGAGTTGGATTTATGTTGTGCTT-----------------TGAATTCCTGCAGATAAAATCA i calJac3.chr6 C 0 C 0 s canFam3.chr19 50650955 66 + 53741614 TATAAAG-----------------------GTAATATTTGTGCTGTGCCTTGCAACTTTATACAGTATGCATTCCTACAGATAAGATCA i canFam3.chr19 C 0 I 196 e mm10.chr2 49737427 133 + 182113224 I a score=71996.000000 s hg38.chr2_GL582966v2_alt 64708 25 + 96131 GGAATATCAGGGGGAAATAGTCCAT s panTro4.chr2B 153177501 25 + 247518478 GGAATATCAGGGGGAAAGAGTCCAT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38384093 25 + 135000294 GGAATATCAGGGGGAGATAGTCCAT i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82336540 25 - 85365473 GGAATATCAGGGGGAAATAGTCCAT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11947862 25 + 106825570 GGAATATCAGGGGGAAATAGTCGAT i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37651946 25 + 132586672 GGAATATCAGGGGGAAATAGTCGAT i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11309155 25 + 104110932 GGAATATCAGGGGGAAATAGTCGAC i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34408779 25 + 128595539 AGAATATCAGGGGGAAATAGGCGAT i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87894192 25 - 158406734 GGAATATCCGGGGGAAATAGTTGAT i calJac3.chr6 C 0 C 0 e canFam3.chr19 50651021 196 + 53741614 I e mm10.chr2 49737427 133 + 182113224 I a score=186796.000000 s hg38.chr2_GL582966v2_alt 64733 61 + 96131 AGATTGGTTTAT-------GG------TTTACACCACTT-TTTCTGGATTTGCTTTAGAACTTTATTTTTTT-ATG s panTro4.chr2B 153177526 61 + 247518478 AGATTGGTTTAT-------GG------TTTACACCACTT-TTTCTGGATTTGCTTTAGAACtttattttttt-atg i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38384118 61 + 135000294 AGATTGGTTTAT-------GG------TTTATACCACTT-TTTCTGGATTTGCTTTACAACtttattttttt-ata i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82336565 61 - 85365473 AGATTGGTTTAT-------GG------TTTACACCACTT-TTTCTGGATTTGCTTTAGAACTTTATTTTTTT-ATA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11947887 60 + 106825570 ACATTGGTTTAT-------GG------TTTACACCACTT-TTTCTGGATTTGCtttataatttta-tttttt-ata i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37651971 60 + 132586672 ACATTGGTTTAT-------GG------TTTACACCACTT-TTTCTGGATTTGCTTTAGAATTTTA-TTTTTT-ATA i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11309180 60 + 104110932 ACATTGGTTTAT-------GG------TTTACACCACtt-tttctggatttgctttagaatttta-tttttt-ata i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34408804 60 + 128595539 ACATTGGTTTGT-------GG------TTTACACCACTT-TTTCTGGATTTGCtttagaatttta-ttgttt-ata i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87894217 69 - 158406734 ACATTGGTTTACGGTTTAAGG------TTTACACCAGTT-TTTCTGGATTTGCTGTAGAACtttatttttttaata i calJac3.chr6 C 0 C 0 s canFam3.chr19 50651217 68 + 53741614 AGAGTTGTTTAT-------GGGTGAGATCTATACCACTTCTTTTTGGATTTGCTTTATTACTTGACattttt-ata i canFam3.chr19 I 196 C 0 e mm10.chr2 49737427 133 + 182113224 I a score=754729.000000 s hg38.chr2_GL582966v2_alt 64794 219 + 96131 ATTATATAGTTGTTATTTATAAAAAATTAAAATAAAAATGATATGCATTAGGCAACAGTGTA----CCTCATCTGTGATTTCTAGGTCATCTATGATACCAAAAGCATGTGTT--TT--GGCCA-gcctgcctctaacatttcggggccaaggcaagggtactcatggagacccCATGGCCTGCAGCCCACCCTCTTCTCTTTCAAGCTGGACATACCAG-CTCCATGT s panTro4.chr2B 153177587 219 + 247518478 attatatagttgttatttataaaaaattaaaataaaaatGATATGCATTAGGCAACAGTGTA----CCTCATATGTGATTTCTAGGTCATCTATGATACCAAAAGCATGTGCT--TT--GGCCA-gcctgcctctaacatttgggggccaaggcaagggtactaatggagacccCATGGCCTGCAGCCCACCCTCTTCTCTTTCAAGCTGGACATACCAG-CTCCATGT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38384179 219 + 135000294 attatatagttgttatttataaaaaatgaaaataaaaatGATATGCATTAGGCAACAGTGCA----CCTCATATGTGATTTCTAGGTCATCTATGATACCAACAGCATGTGCT--TT--GGCCA-gcctgcctctaacatttgggggccaaggcaagggtactaatggagacccCATGGCCTGCAGCCCACCCTCTTCTCTTTCAAGCTGGACAGACCAG-CTCCATGT i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82336626 219 - 85365473 ATTATATAGTTGTTATTTATAAAAAACTAAAATAAAAATGATATGCATTAGGCAACAGTGCA----CCTCATACTTGATTTCTAGGTCATCTACGATACCAATAGCATGTGCT--TT--GGCCA-gcctgcctctaacatttgggggccaaggcaagggtactaatggagacccTATGGCCTGCAGCCCACCCTCTTCTCTTTCAAGCTAGACATACCAG-CTCCATGT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11947947 219 + 106825570 attatatagttattatCTATGAAAAGTGAAAATAAAAACGATGTACATAAGGGAACAGTGCA----CCCCATATGTGATTTCTAGGTCATCTATGATACCAACAGCATGTGCT--TT--GACCA-gcctgcttctaacatttgggggccaaggcaagggtactaatagagacccCATGGCCTGCAGCCCACCCTCTTCTCTTTCAGGCTGGACATACCAA-CTCCATGT i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37652031 219 + 132586672 ATTATATAGTTATTATCTATGAAAAGTGAAAATAAAAACGATGTACATAAGGGAACAGTGCA----CCCCATATGTGATTTCTAGGTCATCTATGATACCAACAGCCTGTGCT--TT--GACCA-gcctgcttctaacatttgggggccaaggcaagggtactaatagagacccCATGGCCTGCAGCCCACCCTCTTCTCTTTCAGGCTGGACATACCAA-CTCCATGT i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11309240 219 + 104110932 attatatagttattatctatgaaaagtgaaaataaaaacgaTGTACATAAGGGAACAGTGCA----CCCCATATGTGATTTCTAGGTCATCTATGATACCAACAGCATGTGCT--TT--GACCA-GCCTGCTTCTAACATTTGGGGGCCAAGGCAAGGATACTAATAGAGACCCCATGGCCTGCAGCCCACCCTCTTCTCTTTCAGGCTGGACATACCAA-CTCCATGT i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34408864 219 + 128595539 attatatagttattatttatGAAAAGTGAAAATAAAAATGATGTACATAAGGGAACAGTGCA----CCTCATATGTGATTTCTAGGTCATCTATGATACCAACAGCATGTGCT--TT--GACCA-gcctgcctctaacatttgggggccaaggcaagggtactaatagagacccCATGGCCTGCAGCCCACCCTCTTCTCTTTCAGGCTGGACATACCAA-CTCCATGT i chlSab2.chr10 C 0 I 207 s calJac3.chr6 87894286 218 - 158406734 atcatatagttattatttataaaaaaCGAAAATAAAAATGATATACATCAGGGAGCAGTGCA----CCTCGTATGTGA-TTCTAGGTCATCCATGATGCCAACAGAATGCGCT--TT--GGCCA-gcctgcctctaacatttgggggccaaggcaagggtactaatagagacccCATGGCCTGTGGCCCACCCTCTTCTCTTTCAAGCTGGACATACCAG-TTCCATGT i calJac3.chr6 C 0 C 0 s mm10.chr2 49737560 183 + 182113224 AAGACATGTTTATAATTTATAAAAACTGAGAGGAA---------------------AGTACA----GCCCAACTCTAGTCTCTAGGTCACCTCTGAGACT-ATGGCATGAGCTTGTT--GGCTGTTCCTACTCCCAACAGTTGGGGGCTGAAGTCAG----------------CCACAGGCAG-AGCCCAGCCCTTTCTCTGTCCAGCTGGACAGAGCAG-CTCCATGC i mm10.chr2 I 133 C 0 s canFam3.chr19 50651285 200 + 53741614 ---------------attaaaaaaattGGAGG---AAATGATAAACACTAGGGCACAGTACATAGGCCTCACGTCTGATATCCCCGTGACCTGTTGTACTAGTAACATGTGCT--TTTGGATAG-TCCTGTCCCTAATATTTGGAGACCAAGGCAAGAGTACAAACAGA----CCA--GTCTGCA--CCACTGTCTCCTCTTTCCACCTAGACGCACCAGCCTCCACGT i canFam3.chr19 C 0 C 0 a score=2335579.000000 s hg38.chr2_GL582966v2_alt 65013 726 + 96131 CCAACTCCCTTTTGCACCCGGTGTGAACTGATGGAACTGT-TAGATGCCGGCTGCCATTTGTTTAAATGGGTga-ggaagaggtagtgccagccctggccttcaga---cctggagtaggaagtttctaggtccccagtactc-tgagggtggtctatagg---------ggacataggttcagatggacatgttcctttggcctgtgaactctttgcttagtggagtagggtgtagccagaggaggg---cccagtgggg--tgctctg--------------------------aatcgt------ccaggtctcagACTGACACTGACTTT-GCTGTATGAGATCAGAGTCGAGAATATTATGA---TGTGTTGAGTTTAAAGAGTACCTGTTCTAAAGTTCTCTTTCTGCATCAGCAACAAACACAGCTTCCATTAGGTGGAGGTTTGCACTCTGCTACAATTCATGCATAG-CAAAGATTCGACCATTATTTCCTGAGGTTCA----------AAAGTAACAGAAACCATGGCTGTTTATATTCTGATGTGATCTAAGGAATCTGACACAGTCTTTCCAGCTGAAATGCTAT---CTTCTTTGTTTACATTCATCCTCGTCACCAAAAACTGTGCTTATAAGATGACTGTTCCAACGGAGGAGTTGTGTTTTCTGGAGAGGTTATTTCATTAGATTAAAGCTCAGTCTCCAGGGTCTTCCTGCCTAAAGCTGAGCTCCCCAGATCTGGAG-AGGGGAGTGTTCTGTATATATTTTCCATCTGCCTAGAAGTT s panTro4.chr2B 153177806 726 + 247518478 CCAACTCCCTTTTGCACCCGATGTGAACTGATGGAACTGT-TAGATGCCGGCTGCCATTTGTTTAAATGGGTga-ggaagaggtagtgccagccctggccttcaga---cctggagtaggaagtttctaggtccccagtactc-tgagggcggtctatagg---------ggacataggttcagatggacatgttcctttggcctgtgaactctttgcttagtggagtagggtgtagccagaggaggg---cccagtgggg--tgctctg--------------------------aatcat------ccaggtctcagACTGACACTGACTTT-GCTGTATGAGATCAGAGTCGAGAATATTATGA---TGTGTTGAGTTTAAAGAATACCTGTTCTAAAGTTCTCTTTCTGCATCAGCAACAAACACAGCTTCCATTAGGTGGTGGTTTGCACTCTGCTACAATTCATGCATAG-CAAAGATTCGACCATTATTTCCTGAGGTTCA----------AAAGTAAAAGAAACCATGGCTGTTTATATTCTGATGTGATCTAAGGAATCTGACACAGTCTTTCCAGCTGAAATGCCAT---CTTGTTTGTTTACATTCATCCTCGTCACCAAAAACTGTGCTTATAAGATGACTGTTCCAACAGAAGAGTTGTGTTTTCTGGAGAGGTTATTTCATTAGATTAAAGCTCAGTCTCCAGGGTCTTCCTGCCTAAAGCTGAGCTCCCCAGATCTGGAG-AGGGGAGTGTTCTGTATATATTTTCCATCTGCCTAGAGGTT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38384398 721 + 135000294 CCAACTCCCTTTTGCACCCGGTGTGAACTGATGGAACTGT-TAGATGTCAGCTGCCATTTGTGTAAATGGGTGA-ggaagaggtagtgccagccctggccttcaga---cctggaataggaagtttctaggtcctcagtactc-tgagggtggtctatagg---------ggacataggttcagatggacatgttcctttggcctgtgaactctttgcttagtagagtagggtgtagccagaggaggg---cccagtgggg--tgctctg--------------------------aatcgt------ccaggtctcagACTGACACTGACTTG-GCTGTATGAGATCAGAGTCGAGAATATTATGA---TGTGTTGAGTTTAAAGAGTACCTGTTCTAAAGTTCTCTTTCTATATCAGCAACAAACACAGCTTCCATTAGGTGGTGGTTTGCACTCTGCTATAATTCATGCATAG-CAAAGATTTGACCATTATTTCTTGAGGTTCA----------AAAGTAACAGAAACCATGGCTCTTTATATTCTGATGTGATCTAAGGAATCTG--ACAGTCTTTCCAGCTGAAATGCTAT---CTTCTTTGTTTACATTCATCCTCGTCACCAAAAACTGTGCTTATAAGATGACTGTTCCAAT---GGAGTTGTGTTTTCTGGAGAGGTTATTTAATTAGATTAAAGCTCAGTCTCCAGGGTCTTCCTGCCTAAAGCTGAGCTCCCCAGATCTGGAG-AGGGGAGTGTTCTGTATATGTTTTCCATCTGCCTAGAAGTC i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82336845 726 - 85365473 CCAGCTCCCTTTTGCACCCGGTGTGAACTGATGGAACTGT-TAGATGCCAGCTGCCATTTGTGTAAATGGGTGA-GGAAGAGGTAGTGCCAGCCCTGGCCTTCAGA---CCTGGAGTAGGAAGTTTCTAGGTCCCCAGTACTC-TGAGGGTGGTCTATGGG---------GGACATAGGTTCAGATGGACATGTTCCTTTGGCCTGCGAACTCTTTGCTTAGTGGAGTAGGGTGTAGCCAGAGGAGGG---CCCAGTGGGG--TGCTCTG--------------------------AATCGT------CCAGGTCTCAGACTGACACTGACTTT-GCTGTATGAGATCAGAGTCGAGAATATTATGACTCTGTGTTGAGTTTAAAGAGTACCTGTTCTAAAGTTCTCTTTCTACATCAGCAACAAACACAGCTTCCATTAGGTGGTGGTTTGCACTCTGCTACAATTCATGCATAG-CAAAGATTCGACCATTATTTCCTGAGGTTCA----------AAAGTAACAGAAACCATGGCTCTTTATATTCTGATGTGATCTAAGGAATCTGACGCAGTCTTTCCAGCTGAAATGCTAT---CTTCTTTGTTTACATTCATCCTCGTCACCAAAAACTGTGCTTATAAGATGACTGTTCCAAT---GGAGTTGTGTTTTCTGGAGAGGTTATTTTATTAGATTAAAGCTCAGTCTCCAGGGTCTTCCTGCCTAAAGCTGAGCTCCCCAGATCTGGAG-AGGGGAGTGTTCTGTACATATTTTCCATCTGCCTAGAAGTT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11948166 720 + 106825570 CCAAGTCCCTTTTGCACCCGGTGTGAACTGATGGAACTGT-TAGATGCCAGCTGCCATTTGTGTAAATGGGTga-ggaagaggtagtgccagccctggccttcaga---cctggagtaggaagtttctaggtccccagtactc-tgagtgtggtctagagg---------agacataggttcaggtggacatgctcccttggcctgtgaactctttgcttagtggagtagggtgcagccagaggaggg---cccagtgggg--tactctg--------------------------aatcgt------ccaggtctcagACTGACACTGACTTT-GCTGTATGAGATCAGAGTCAAGAACATTAGGA---TGTGTTGAGTTTAAAGAGTACCTGTTCTAAAGTTCTCTTTCTACAACAGCAACAAACACAGGTTCCATTAGGTGGTGGTTTACACTCTGCTACAATTCATACATTG-CAAAGATTCGACCATTATATCCTGAAGTTCA----------AAAGTAACAGAAACCATGGCTCTTTATTTTCTGATGTGATCTAAGGAACCTG--GCAGTCTTTCCAGCTGAAATGCTAT---CTTCTGTGTTTACGTTCATCCTCGTCACCAAAAACTGTGCTTATAAGATGACTGCTCCAAC---GGAGTTGTGTTTTCTGGAGAAGTTATTTCATTAGATTAGAGCTCAGTGTCCAGGGTC-TCCTGCCTAAAGCTGAGCTCCCTAGATCAGGAG-AGGGAAGTGTTCTGTACACATTTTCCATCTGCCTAGAAGTT i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37652250 720 + 132586672 CCAAGTCCCTTTTGCACCCGGTGTGAACTGATGGAACTGT-TAGATGCCAGCTGCCATTTGTGTAAATGGGTga-ggaagaggtagtgccagccctggccttcaga---cctggagtaggaagtttctaggtccccagtactc-tgagtgtggtctagagg---------agacataggttcaggtggacatgctcccttggcctgtgaactctttgcttagtggagtagggtgcagccagaggaggg---cccagtgggg--tactctg--------------------------aatcgt------ccaggtctcagACTGACACTGACTTT-GCTGTATGAGATCAGAGTCAAGAACATTAGGA---TGTGTTGAGTTTAAAGAGTACCTGTTCTAAAGTTCTCTTTCTACAACAGCAACAAACACAGGTTCCATTAGGTGGTGGTTTGCACTCTGCTACAATTCATACATTG-CAAAGATTCGACCATTATTTCCTGAAGTTCA----------AAAGTAACAGAAACCATGGCTCTTTATTTTCTGATGTGATCTAAGGAACCTG--GCAGTCTTTCCAGCTGAAATGCTAT---CTTCTGTGTTTACGTTCATCCTCATCACCAAAAACTGTGCTTATAAGATGACTGCTCCAAC---GGAGTTGTGTTTTCTGGAGAAGTTATTTCATTAGATTAGAGCTCAGTCTCCAGGGTC-TCCTGCCTAAAGCTGAGCTCCCTAGATCTGGAG-AGGGAAGTGTTCTGTACACATTTTCCATCTGCCTAGAAGTT i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11309459 720 + 104110932 CCAAATCCCTTTTGCACCCGGTGTGAACTGATGGAACTGT-TAGATGCCAGCTGCCATTTGTGTAAATGGGTGA-GGAAGAGGTAGTGCCAGCACTGGCCTTCAGA---CCTGGAGTAGGAAGTTTCTAGGTCCCCAGTACTC-TGAGTGTGGTCTAGAGG---------AGACATAGGTTCAGGTGGACATGCTCCCTTGGCCTGGGAACTCTTTGCTTAGTGGAGTAGGGTGCAGCCAGAGGAGGG---CCCAGTGGGG--TGCTCTG--------------------------AATCGT------CCAGGTCTCAGACTGACACTGACTTT-GCTGTATGAGATCAGAGTCAAGAACATTAGGA---TGTGTTGAGTTTAAAGAGTACCTGTTCTAAAGTTCTCTTTCTACATCAGCAGCAAACACAGGTTTCATTAGGTGGTGGTTTGCACTCTGCTACAATTCATACATTG-CAAAGATTCGACCATTATTTCCTGAAGTTCA----------AAAGTAACAGAAACCATGGCTCTTTATTTTCTGATGTGATCTAAGGAACCTG--GCAGTCTTTCCAGCTGAAATGCTAT---CTTCTGTGTTTACATTCATCCTCGTCACCAAAAACTGTGCTTATAAGATGACTGCTCCAAC---GGAGTTGTGTTTTCTGGAGAAGTTATTTCATTAGATTAGAGCTCAGTCTCCAGGGTC-TCCTGCCTAAAGCTGAGCTCCCTAGATCTGGAG-AGGGAAGTGTTCTGTACACATTTTCCATCTGCCTAGAAGTT i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34409290 721 + 128595539 CCAAGTCCCTTTTGCACCCAGTGTGAACTGATGGAACTGT-TAGATGCCAACTGCCATTTGTGTAAATGGGTga-ggaagaggtagggccagccctggccttcaga---cctggagtagcaagtttctaggtccccagtactc-tgagtgtggtctagagg---------agacatacgttcaggtggacatgctcccttggcctgtgaactctttgcttagtggagtagggtgcagccagaggaggg---cccagtgggg--tgctctg--------------------------aatcat------ctgggtctcagACTGACACTGACTTT-GCTGTATGAGATCAGAGTCAAGAACATTAGGA---TGTGTTGAGTTTAAAGAGTACCTGTTCTAAAGTTCTCTTTCTACATCAGCAACAAACACAGGTTCCATTAGGTGGTGGTTTGCACTCTGCTACAATTCATACATTG-CAAAGATTCGACCATTATTTCCTGAAGTTCA----------AAAGTAACAGAAACCATGGCTCTTTATTTTCTGATGTGATCTAAGGAACCTG--GCAGTCTTTCCAACTGAAATGCTAT---CTTCTGTGTTTACATTCATCCTCATCACCAAAAACTGTGCCTATAAGATGACTGCTCCAAC---GGAGTTGTGTTTTCTGGAGAAGTTATTTCATTAGATTAGAGCTCAGTCTCCAGGGTCTTCCTGCCTAAAGCTGAGCTCCCCAGATCTGGAG-AGGGAAGTGTTCTGTACACATTTTCCATCTGCCTAAAAGTT i chlSab2.chr10 I 207 I 8 s calJac3.chr6 87894504 612 - 158406734 CCAAGTCCCTTTTGCACCCACTGTGAACTGGTGAAACTGT-TGGATGTCAGCTGCTATTTGTACGAATGGGTAA-GGAAGAGATAGTGCCAGCTCTGGCCTTCAGA---CCTGgagtaggaagtttctaggtctccagtactcttgagtgtggcctacagg----------gacataggttcgggtggacatgctcccttggcctgtgaactctttgcttagtggagtggggtgcaaccagaggaggg---ccCA-TGGGG--TGCTCCG--------------------------AATTGT------CCAGGCCTCAGAGTGACACTGAGTTT-GCTGTATGAGATCTGGGTCAAGAGTATTAGGA---TGCGTTGAGTTTAAGGAATGTTTGTTACAAAGTTCTCTTTCTACATCAACAATAAACACAGCTTCCATTAGCTGCTGGTTGGGACTTTGCTGCAATTCATACATGG-CAAAGATT---CCATTATTCCCTGAGTTTCAAAAGTAATAGAAAGTAACAGAAACTATGGCTCTTTATTTTCTGATGTGATCTAAGGAATCAG-------TTTTCCAGCTGAAATGC--------TCTTTGTTTACATTCAGC------------------------------------------------------------------------------------------------------------CTAAGGGTGAGCTCCCTAGATCTGGAG-AGGGGAGTGTTCTGTACACATTTTCCATCTGCCTAGAAGTT i calJac3.chr6 C 0 C 0 s mm10.chr2 49737743 587 + 182113224 CCAAATCCTGCCTGCACAC--CGTACCCTGCCATGACTAC-TC-AGGTTAGCTGTGCCCCGTGTGGGTGAGCGA-GGAGGAGACGGTAC-------AGCCTGCAGAGTCCGTAGACAAGGGCATGACTCAGTCTGCAGTGCTC-AAAGTACTCCCTA--------------GACAAGGACGCAGG------------------CTGTGGATGC--TGCTCACTGGAGCC-AGTGCAGCCAGGGAGAGG---GGGAGCAGCACTCACTCTC--------------------------AAGTGTGGGGTCCCCGGCCTTGGGGTGATACTGACT---GCTGTATGAGAGC--------------TAGGA---CGCTTCGAAAGTCAGTCGGG--------AAAG---CCTTCCTAAGTTAGCAGCCGGTGCACTCCCC-----------------ACTCTGCCACAATACAG--------AAAG------CCTTTGCTTCT-----GTCA-------------------GAAACCTTGCCTCTT----TTCTGGTGTGGTTTATGAAAACTA--AGAGTATTCCTCATTGAAATTCTCTC-CCTTCTTTGTTCATATCGTATCCCTT--CCAAA------------------GCTCTTCCAAC---TGGGTTG----CCGAGGAGTAGTTAGATCACTGGGAT-----TCATTCGACTGGGTCGTCCTGCCCGGAACCTGAGTCCCCAGATCTAGAG-GGAGCAG---TCTGTGTA----TTCCATCTGTCTAGAAGTC i mm10.chr2 C 0 C 0 s canFam3.chr19 50651485 729 + 53741614 CTACGTCCCTTCTGCACTTTGTGTGAACTGATGGAACTGTGTAGCTATCAACTCTATTCTGTGTAAATTGATGACAGAGGCTACAGTGCCAGCCCTGGGGT----G---GTTGGAGTAGGGAGTTATGGGGTTTCCAGTACTC-AGAGTGTGGTCTGGAAGACCAGATGTGGACATGGGCTCCGTGTGGCATGCCCGGTTGGCTCACACGCTCTTTGCTCAGTGGAGC-GAGTGCAGCCAGAGGACGGGGCCCCAGTGGGG--TGTCCAGAGAGTGGGGCCTGGGACTGAGGCCCCAGTTGC------CCAGGTCTGAGAGTGACATGGACTTTGGGTACATGAGGTCAGAGTCAAGAATATCAGAA---TGTTTAGGGGCTAAAGGATAGCTG------------CTTTCTGCGTTAGCAA-----ACAGCTTTC---------CGCTTTGTATTCTGTTACAGTTTATACAGAGTCAAATATT---TAATCATTTCCTGGGATTCA----------AAAGTAAGACAAATCTTGGCTCGTTATTTTCTGACATGACCTAAGGAATCTGACAAAATATTTCCAGCTAAAATGCTATTATTTTCTTTGCTTACACTCATCCTTTTCATCAAAAGCTGTGCTTATGACATGAC---TTCAAC---TGAGTCCCATTTCCC--AGAGGTTATTTCATTAGATTAGAGCTCAGTCTCCAGGGTTTTCTTGCCTTAGTACGAACGTTGTAGATCTTGAGCGGGGGAGGAGTGTCTACATAT-TTCCATCTGCTTAGAAGGG i canFam3.chr19 C 0 C 0 a score=165859.000000 s hg38.chr2_GL582966v2_alt 65739 53 + 96131 ACCACTGTCCCTGTTCAGCCAACAAGCTC--------TCATTCATCCAT----TCATTTCACGAA s panTro4.chr2B 153178532 53 + 247518478 ACCACTGTCCCTGTTCAGCCAACAAGCTC--------TCATTCATCCAT----TCATTTCACGAA i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38385119 53 + 135000294 ACCACTGTCCCTGTTCAGCCAACAAGCTC--------TCATTCATCcat----tcatttcactaa i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82337571 53 - 85365473 ACCACTGTCCCTGTTCAGCCAACGAGCTC--------TCGTTCATCCAT----TCATTTCACTAC i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11948886 61 + 106825570 ACCACTGTCCCTGTTCAGCCAACAAGCTCtcattcattcattcattcat----tcattTCACTAG i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37652970 53 + 132586672 ACCACTGTCCCTGTTCAGCCAACAAGCTC--------TCATTCATTCAT----TCATTTCACTAG i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11310179 53 + 104110932 ACCACTGTCCCTGTTCAGCCAACAagctc--------tcattcattcat----tcatttcactag i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34410019 53 + 128595539 AACACTGTCCCTGTTCAGCCAACAAGCTC--------TCATTCATTCAT----TCATTTCACTAA i chlSab2.chr10 I 8 I 126 s mm10.chr2 49738330 56 + 182113224 -ACATGATGCCTGTTCAGCCCCTGAGCTC--------CCACCCATTTATTGACTCATTCCACTGG i mm10.chr2 C 0 C 0 s canFam3.chr19 50652214 53 + 53741614 CCCAGTGTCTTTATTCAGCCAACAAGCTC--------CCGTTCATTCAT----TGGTTCCATTAA i canFam3.chr19 C 0 C 0 e calJac3.chr6 87895116 0 - 158406734 C a score=1597935.000000 s hg38.chr2_GL582966v2_alt 65792 582 + 96131 TATTTATTAAGCACT-------TACCCTCATGGAGCTAGCAAGTAAAAAAGACAAGACAAATGATGTAGACATTAGGTGCTGTAAGAAAGTGTTGGGGCCTGAGTGATAAGGAGCTAGCCAAGGTA------GTGTGTGTGTGTGGCATGTGGTGGGGTGGTGATGGTGGggagggaaagcttccagggagaggaaaatgca------aaggccctga-g--atgggaattgg--tgtgtctgaaggacagaaaaagggAAGACCTAATAATTGAATGGTGAAGATGGAATCCAGAGGTGCATGTTCAATGAATGAGGCCTTCAGCCCTGCAC-TTTTCCCAGCCCCTTTCTCT-------------------------------------------------------CATGCAT------------------------------------------GCTTTT-CTCT--GAGAAGGGAAACCAGCTC----GGCCTTTGGCATCTCATGTTAACTGGATGGTGAGG---AGGGGCCTGCCA--------TGAGTGGTGTCTGTGGGGAATGAAGCCGAGAAGCACA-GGGA-GAAGCAGAGGTCTGTCTTGGT--ATGATTCTGAACACCAAGGCAAGGGTAAAAT-GGGCACCATTTGGTTG--TGGCACTCAGAAAAGGGACTCAGGAACCCCTCCTCTCTCGCATTTTCCTACCAGACAATTCC s panTro4.chr2B 153178585 582 + 247518478 TATTTATTAAGCACT-------TACCCTCATGGAGCTAGCAAGTAAAAAAGACAAGACAAATGATGTAGACATTAGGTGCTGTAAGAAAGTGTTGGGGCCTGAGTGATAAGGAGCTAGCCAGGGTA------GTGTGTGTGTGTGGCATGTGGTGGGGTGGTGATGGTGGggagggaaagcttccagggagaggaaaatgca------aaggccctga-g--atgggaattgg--tgtgtctgaaggacagaaaaagggAAGACCTAATAATTGAATGGTGAAGACGGAATCCAGAGGTGCATGTTCAATGAATGAGGCCTTCAGCCCTGCAC-TTTTCCCAGCCCCTTTCTCT-------------------------------------------------------CATGCAC------------------------------------------GCTTTT-CTCT--GAGAAGGGAAACCAGCTC----GGCCTTTGGCATCTCATGTTAAGTGGATGGTGAGG---AGGGGCCTGCCA--------TGAGTGGTGTCTGTGGGGAATGAAGCCGAGAAGCACA-GGGA-GAAGCAGAGGTCTGTCTTGGT--ATGATTCTGAACACCAAGGCAAGGGTAAAAT-GGGCACCATTTGGTTG--TGGCACTCAGAAAAGGGGCTCAGGAACCCCTCCTCTCTTGCATTTTCCTACCAGACAATTCC i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38385172 577 + 135000294 tatttattaagcacc-------tacCCTCATGGAGCTAGCAAGTAAAAAAGACAAGACAAATGATGTAGACATTAGGTGCTGTAAGAAAGTGTTGGGGCCTGAGTGATAAGGAGCTAGCCAGGGTA------GTGTGTGTGTGTGGCGTGTGGTGGGGTGGTGATGGTggtgagggaaagcttccagggagaggaaaatgca------caggccctga-g--atgggagttgg--tgtgtctgaaggacagaaaaagggaagacctagtaattgaatggtgaagatggaatccagaggtgcatgttcaatgaatgaggccTTCAGCCCTGCAC-TTTTCCCAGCCCCTTTCTCT-------------------------------------------------------CATGCAT------------------------------------------GCTTTT-CTCT--GAGAAGGGAAACCAGCTCGGCGGGCCTTTGGCATCTCATGTTAAGTGGATGGTGAGG---AGGGG-CTGCCA--------TGAGTGGTGTCTGTGGGGAAT--------GAAGCACA-GGGA-GAAGCAGAGGTCTGTCTTGGT--ATGATTCTGAACACCAAGGCAAGGGTAAAAT-GGGCACCATTTGGTAG--TGGCACTCAGAAAAGGGACTCAGGAACCCCTCCTCTCTCACATTTTCCCACCAGACAATTCC i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82337624 582 - 85365473 TATTTATTAAGCACC-------TACCCTCATGGAGCCAGCAAGTAAAAAAGACAGGACAAATGATGTAGACGTTAGGTGCTGTAAGAAAGTGTCGGGGCCTGAGTGATAAGGAGCTAGCCAGGgta------gtgtgtgtgtgtggtgtgcggtggggtggtgatggtgGggagggaaagcttccagggagaggaaaatgca------aaggccctga-g--atgggaattgg--tgtgtctgaaggacagaaaaagggAAGACCTAATAATTGAATGGTGAAGATGCAATCCAGAGGTGCATGTTCAATGAATGAGGCCTTCAGCCCTGCAC-TTTTCCCAGCCCCTTTCTCT-------------------------------------------------------CATGCAC------------------------------------------GCTTTT-CTCT--GAGAAGGGAAACCAGCTC----GGCCTTTGGCATCTCATGTTAAGTGGATGGTGAGG---AGGGGCCTGCCA--------TGAGTGGTGTCTGTGGGGAATGAAGCCGAGAAGCACA-GGGA-GAAGCAGAGGTCTGTCTTGGT--ATGATTCTGAACACCAAGGCAAGGGTAAAAT-GGACAACATTTGGTAG--TGGCACTCAGAAAAGGGACTCAGGAACCCCTCCTCTCTCGCATTTTCCCACCAGACAATTCC i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11948947 587 + 106825570 TATTTATTAAGCACC-------TACCCTCAGGGAGCTAACAACTAAAAAAGACAAGACAAATGATGTAGACATTAGGTGCTGTAAGAAAGTgttggggcctgagtgataaggagctagccagggcagtgtgtgtgtgtgtgtgtggtgtgtggt-gggtggtgatggtggggagggaaagcttccagggagaggaaaatgca------aaggtcctga-g--atgggaattgg--tgtgtctgaaggacagaaaaaggaaagacctaatatttgaatggtgaagatggaatccagaggtgcgtgttcaatgaatgaggccTTCAGCCCCGCAC-TTTTCCCAGCCTGTTTCTCT-------------------------------------------------------CGTGCAC------------------------------------------GCTTTT-CTCT--GAGGAGCGAAACCCGCTT----GGCCTTCGGCATCTCACGTTAAGTGGATGGTGAGG---AGGGGCCTGCCA--------TGAGTGGTGTCTGTGGGGAATGAAGCCAAGAAGCACA-GGGA-GAAGCAGAGGTCTGTCTTGGT--GTGATTCTGAACACCAAGGCAAGGGTGAAAT-GGGCACCATTTGGTAG--TGGCACTCAGAAAAGGGACTCAGGAACCCCTCCTGTCTCTCATTTTCCCACCAGTCAATTCC i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37653023 587 + 132586672 TATTTATTAAGCACC-------TACCCTCAGGGAGCTAACAACTAAAAAAGACAAGACAAATGATGTAGACATTAGGTGCTGTAAGAAAGTGTTGGGGCCtgagtgataaggagctagccagggcagtgtgtgtgtgtgtgtgtggtgtgtggt-gggtggtgATGGTGGggagggaaagcttccagggagaggaaaatgca------aaggtcctga-g--atgggaattgg--tgtgtctgaaggacagaaaaaggAAAGACCTAATATTTGAATGGTGAAGATGGAATCCAGAGGTGCGTGTTCAATGAATGAGGCCTTCAGCCCTGCAC-TTTTCCCAGCCTGTTTCTCT-------------------------------------------------------CATGCAC------------------------------------------GCTTTT-CTCT--GAGGAGCGAAACCCGCTT----GGCCTTCGGCATCTCACGTTAAGTGGATGGTGAGG---AGGGGCCTGCCA--------TGAGTGGTGTCTGTGGGGAATGAAGCCAAGAAGCACA-GGGA-GAAGCAGAGGTCTGTCTTGGT--GTGATTCTGAACACCAAGGCAAGGGTGAAAT-GGGCACCATTTGGTAG--TGGCACTCAGAAAAGGGACTCAGGAACCCCTCCTGTCTCTCATTTTCCCACCAGTCAATTCC i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11310232 581 + 104110932 tatttattaagcacc-------tacccTCAGGGAGCTAACAActaaaaaagacaagacaaatgATGTAGACGTTAGGTGCTGTAAGAAAGTGTTGGGGCCTGAGTGATAAGGAGCTAGCctgggca------gtgtgtgtgtgtggtgtgtggt-gggtggtgatggtggggagggagagcttcCAGGGAGAGGAAAATGCA------AAGGTCCTGA-G--ATGGGAATTGG--TGTGTCTgaaggacagaaaaaggaaagacctAATATTTGAATGGTGAAGATGGAATCCAGAGGTGCATGTTCAATGAATGAGGCCTTCAGCCCCGCAC-TTTTCCCAGCCTGTTTCTCT-------------------------------------------------------CATGCAC------------------------------------------GCTTTT-CTCT--GAGGAGCAAAACCCGCTT----GGCCTTCGGCATCTCACGTTAAGTGGATGGTGAGG---AGGGGCCTGCCA--------TGAGTGGTGTCTGTGGGGAATGAAGCCAAGAAGCACA-GGGA-GAAGCAGAGGTCTGTCTTGGT--GTGATTCTGAACACCAAGGCAAGGGTGAAAT-GGGCACCATTTGGTGG--TGGCACTCAGAAAAGGGACTCAGGAACCCCTCCTGTCTCGCATTTTCCCACCAGTCaattcc i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34410198 584 + 128595539 TATTTATTAAGCACC-------TACCCTCAGGGAGCTAACAACTAAAAAAGACAAGACAAATGATGTTGACGTTAGGTGCTGTAAGAAAGTGTTGGGGCCTGAGTGATAAGGAGCTAGCCAGGGCA----gtgtgtgtgtgtgtggtgtgtggtggggtggtgATGGTGGggagggaaagcttccagggagaggaaaatgca------aaggtcctga-g--atgggaattgg--tgtgtctgaaggacagaaaaaggAAAGACCTAATATTTGAATGGTGAAGATGGAATCCAGAGGTGCGTGTTCAATGAACGAGGCCTTCAGCCCCGCAC-TTTTCCCAGCCTGTTTCTCT-------------------------------------------------------TGTGTGC------------------------------------------GCTTTT-CTCT--GAGGAGCGAAACCTGCTT----GGCCTTCGGCATCTCACGTTAAGTGGATGGTGAGG---AGGGGCCTGCCA--------TGAGTGGTGTCTGTGGGGAATGAAGCCAAGAAGCACA-GGGA-AAAGCAGAGGTCTGTCTTGGT--GTGATTCTGAACACCGAGGCAAGGGTGAAAT-GGGCACCATTTGGTGG--TGGCACTCAGAAAAGGGACTCAGGAACCCCTCCTGTCTCACATTTTCCCACCAGACAATTCC i chlSab2.chr10 I 126 C 0 s mm10.chr2 49738386 630 + 182113224 TGTTTATTAATTATC-------TACTCT----ATACTGTCATGAGCAAAAAACCAGTGATGTTAAACAGAAGCCAGGGGCTGTGAGAAAATGACAGAACC----TAGTAAGGAGTCACCCAGGGCA----TCATGTGCGTGTGTGGAG-------GGAGGGTACAGGCAGAGA-GGAAACCTT-----------AAAGTGCA------GAGTCTCTAATG--ACCAGAGTTGAACTGTCTCTGAGGGACAGATGAAGAGCAGATGTGCTGTTTG--------------AATCTATAGGTACGTGTCCATAGAGAGAGGCCTTCAGTCCTGGGT-ATtcctcctccccctcctcctcttcctcctcctcctcctcctccccctGGTGCTCCCTttgaatccaggccattgcttacactgggcaggtgctctactagtgagctacaccattagctcGGTAGCTTTTACCAC--AAGGAAGGAAACCAGGGC----AGGCTTTGGTCTC-CACGTGGGACAAGTGGGAGAGCACAGGACATGGCCACACAGCATTTGGCAGCATCT----GGCAGCGAGCTGCAGAGTACATGGGA-GAGACAGAGAGCTCCCTTGGTCCTCAGTTCTGAGTCCCAGGCAAAGGACGAAAT-------------GTTG--TGCCATTC----------CTCGGGGAGGTCT-CTAACGTGTCTTTTCCAGTTGGACAGCTGC i mm10.chr2 C 0 C 0 s canFam3.chr19 50652267 549 + 53741614 TATTTATTAAGCATCGACTCCATACTCTCATGGAGCTGACAAGTGAAAAGAAGTAGATAAGTGATGTAGGAGCTGCGTGCTGTAAGGAAGTGTTAGGACCTGAGTGCCTAGG----ACTCTGGGTG---------------------------------------GGTCggggggagcacttcctagggagaggaaagtgtgaaacgcaaggccctga-ggcacaggaattga--tgtgtttaagagacagaaaaagAAAAGACACGATATTTGAGTTCCAAAGCCAGACTCCGGAGGTGCCGGTTCAAAGAATGAAGCCTCTGCCCTGGAACATTTTCTCAGTCT-TTTCTCT-------------------------------------------------------CCAGAAC------------------------------------------ACTGTT-TTCTAGGAGGAGAAAAGCCAGCTT----GGGCTTTGGCATCTCAC-CTAAGCGGATGGAGAGG---GG---------A--------CGGG-----TCGGTGAGGACTGAAGCAGAGGAGCACA-GGAAGGAAACAGAGGACCGTGTTAGTCTGTGATCTTAGGGCCCAAGGCAGGGGGAGAATTATGTACCATTTGGGAGCTTGAACCCCCAAAAAAGGGCCCAGAA----CTCCCCTATTGCATTTTCACATCAGACGGTCCC i canFam3.chr19 C 0 C 0 e calJac3.chr6 87895116 0 - 158406734 C a score=1269846.000000 s hg38.chr2_GL582966v2_alt 66374 313 + 96131 AGGCCAGCCTGGATGACCACTTGCTAGTCATTCACTCTTCCTTTT-----------TGCTTGTTTAAAGCACGAAGCCAAGATCAAGTCTCTGACAGACTACATGCAGAACATGGAACAGAAGAGGAGGCAGCTAGAAGAGTCCCAGGACTCGCTCAGCGAAGAGCTGGCAAAGCTCCGAGCCCAGGGTAAATATTTGACTAACGTGCAGGTGTCAAACACCTGGCCTGAGTC-AGACAGCCTCTGG-----------------------------------------------------TTGGCTGGAATCATGATGTTTAGTTTCGTTCAGTTAAAGCATTTCTAGGTCTACTGCAAA----CAAAACCATAACTA------GAAA s panTro4.chr2B 153179167 317 + 247518478 AGGCCAGCCTGGATGACCACTTGCTAGTCATTCACTCTTCCTTTT-----------TGCTTGTTTAAAGCACGAGGCCAAGATCAAGTCTCTGACAGACTACATGCAGAACATGGAACAGAAGAGGAGGCAGCTAGAAGAGTCCCAGGACTCGCTCAGCGAAGAGCTGGCAAAGCTCCGAGCCCAGGGTAAATATTTGACTAATGTGCAGGTGTCAAACACCTGGCCTGAGTC-AGGCAGCCTCTGG-----------------------------------------------------TTGGCTGGAATCGTGATGTTTAGTTTCGTTCAGTTAAAGCATTTCTAGGTCTACTGCTAGGTCTTTCTAGCATAACTA------GAAA i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38385749 312 + 135000294 AGGCCAGCCTGGATGACCACTTGCTAGTCATTCACTCTTTCTTTT-----------TGCTTGTTTAAAGCACGAAGCCAAGATCAAGTCTCTGACAGACTACATGCAGAACATGGAACAGAAGAGGAGGCAGCTAGAAGAGTCCCAGGACTCGCTCAGTGAAGAGCTGGCGAAGCTCCGAGCCCAAGGT--ATAGTTGACTAACGTGCAGGTGTCAAACACCTGGCCTGAGTCAAGACAGCCTCTGG-----------------------------------------------------TTGGCTGGAATCATGATGTTTAGTTTTGCTCAGTTAAAGCATTTCTAGGTCTACTGCAAA----CAATAGCATAACTA------GAAA i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82338206 313 - 85365473 AGGCCAGCCTGGATGACCACTTGCTAGTCATTCACTCTTCCCTTT-----------TGCTTGTTTAAAGCACGAAGCCAAGATCAAGTCTCTGACAGACTACATGCAGAACATGGAACAGAAAAGGAGGCAGCTAGAAGAGTCCCAGGACTCGCTCAGCGAAGAGCTGGCAAAGCTCCGAGCCCAAGGTAAATATTTGACTAACGTGCAGGTGTCAAACACCTGGCCTGAGTC-AGACAGCCTCTGG-----------------------------------------------------TTGGCTGGAATCATGATGTTAAGTTTTGTTCAGTTAAAGCATTTCTAGGTCTACTGCAAA----CAATAGCATAACTA------GAAA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11949534 313 + 106825570 AGGCCAGCCTGGATGATCACCTGCTAGTCATTCACTCTTCCTTTT-----------TGCTTGTTTAAAGCACGAAGCCAAGATCAAGTCTCTGACAGACTACATGCAGAACATGGAACAGAAGAGGAGGCAGCTAGAAGAGTCCCAGGACTCGCTCAGCGAAGAGCTGGCTAAGCTCCGAGCCCAGGGTAAATATTTGACTAACGCGCAGGTGTCAAACACCTGGCCTAAGGC-AGACAGCCTCTGG-----------------------------------------------------TTGACTGGAATCATGATGTTTAGTTTTGCTTAGTTGAAGTATTTCTAGGTCTGCTGCAAA----CAATAGCATAACTG------GAAA i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37653610 313 + 132586672 AGGCCAGCCTGGATGATCACCTGCTAGTCATTCACTCTTCCTTTT-----------TGCTTGTTTAAAGCACGAAGCCAAGATCAAGTCTCTGACAGACTACATGCAGAACATGGAACAGAAGAGGAGGCAGCTAGAAGAGTCCCAGGACTCGCTCAGCGAAGAGCTGGCTAAGCTCCGAGCCCAGGGTAAATATTTGACTAACGCGCAGGTGTCAAACACCTGGCCTAAGGC-AGACAGCCTCTGG-----------------------------------------------------TTGACTGGAATCATGATGTTTAGTTTTGCTTAGTTGAAGTATTTCTAGGTCTGCTGCAAA----CAATAGCATAACTG------GAAA i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11310813 313 + 104110932 aggccagcctggaTGATCACCTGCTAGTCATTCACTCTTCCTTTT-----------TGCTTGTTTAAAGCACGAAGCCAAGATCAAGTCTCTGACAGACTACATGCAGAACATGGAACAGAAGAGGAGGCAGCTAGAAGAGTCCCAGGACTCGCTCAGCGAAGAGCTGGCTAAGCTCCGAGCCCAGGGTAAATATTTGACTAACGCGCAGGTGTCAAACACCTGGCCTAAGGC-AGACAGCCTCTGG-----------------------------------------------------TTGACTGGAATCATGATGTTTAGTTTTGCTTAGTTGAAGTATTTCTAGGTCTGCTGCAAA----CAATAGCATAactg------gaaa i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34410782 313 + 128595539 AGGCCAGCCTGGATGACCACCTGCTAGTCATTCACTCTTCCTTTT-----------TGCTTGTTTAAAGCATGAAGCCAAGATCAAGTCTCTGACAGACTACATGCAGAACATGGAACAGAAGAGGAGGCAGCTAGAAGAGTCCCAGGACTCGCTCAGCGAAGAGCTGGCTAAGCTCCGAGCCCAGGGTAAATATTTGACTAACGCGCAGGTGTCAAACACCTGGCCTAAGGC-AGACAGCCTCTGG-----------------------------------------------------TTGACTGGAATCATGATGTTTAGTTTTGCTCAGTTGAAGTATTTCTAGGTCTACTGCAAA----CAATAGCATAACTG------GAAA i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87895116 358 - 158406734 AGGCCAGCCTGGGTGACCACTTGCTAGTCATTCACTCTTCTATTT-----------TGCTTGTTTAAAGCACGAAGCCAAGATCAAGTCTCTGACAGACTACATGCAGAACATGGAACAGAAGAGGAGACAGTTAGAAGAGTCCCAGGACTCACTCAGCGAAGAGCTGGCCAAGCTCCGAGCCCAAGGTAAATATTTGTCTACCACA-------TGAACACCTGGCCTAAGTC-AGACAGCCTCTGATTAAAATGTTACAATTATTAATACATATTTTCAAGTGGCTTTCCTTGATTTCCTTGGCTGGAATCAAGAT-TTTAGTTTTGTTCAGTTAAAGCATTTCTAGGTCTTTTGCAAA----CAATAGCATAACTA------GAAA i calJac3.chr6 C 0 C 0 s mm10.chr2 49739016 306 + 182113224 AGGCGAGCCGAGATAGTCAGATGCTAGGTCCTCACCTTTGCTTCT---GCTCTGCCTTCTTCTTCAAAGCACGAAGCCAAGATCAAGTCTCTGACAGACTACATGCAGAACATGGAACAGAAGAGGCGGCAGCTGGAAGAGTCCCAGGACTCCCTCAGCGAGGAACTGGCCAAGCTCCGGGCCCAGGGTAAATA-CTGACTCCTTTGCCGGTGTCAGATACTTGGCCTGAGCC-----AGTCTGGAG-----------------------------------------------------CTGGCTGAGGTC-TGATGTTTAGTTTTGTTCAGCTACAGTGTTTCTGGG---------AA----CTGTAGCATAACTG------AAAG i mm10.chr2 C 0 C 0 s canFam3.chr19 50652816 327 + 53741614 GGGCAAGCCAGGATGGCCA-TTGCTGGTCACTCACGCCTCCTTTTTATTATCTATTTGCTTATTTAAAGCATGAAGCCAAGATCAAATCCCTGACAGACTACATGCAGAACATGGAACAGAAGAGGAGGCAGCTGGAAGAGTCCCAAGACTCGCTCAGTGAAGAGCTGGCCAAGCTCCGGGCCCAAGGTAAATAATAGA--ACTTTGCAGGTGTGGAGCTCTTGGCCTGTATC-AGATACTCTCTAG-----------------------------------------------------TTGGCTGAACTCATGATGTTTAGTTCTGCTCAATCACAGCATTTCTAGATCTGCTGAAAA----CAATGGAATACTTGCGGGGAGGAA i canFam3.chr19 C 0 C 0 a score=42995.000000 s hg38.chr2_GL582966v2_alt 66687 45 + 96131 AAAAGGAGCGATTTCt-tttctttctttctt-----------------tcttttttttttttt s panTro4.chr2B 153179484 42 + 247518478 AAAAGGAGCGATttct-tttctttctttct--------------------ttttttttttttt i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38386061 43 + 135000294 AAAAGGAGAGATTTCt-tttctttttttttt-------------------tttttttttttta i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82338519 62 - 85365473 AAAAGGAGAGATTTCT-TTTCTTTCTTTCtttttttttttttttttttttttttttttttgtt i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11949847 46 + 106825570 AAAGGGAGAGATTTCTATTTCGttttttctt-----------------tcttttttttttttt i rheMac3.chr12 C 0 I 277 s macFas5.chr12 37653923 43 + 132586672 AAAGGGAGAGATTTCTATTTCGttttttctt-----------------tctttttttttt--- i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11311126 46 + 104110932 aaaggaagagatttctatttctttttttctt-----------------tcttttttttttttt i papAnu2.chr12 C 0 I 7 s chlSab2.chr10 34411095 46 + 128595539 AAAGGGAGAGATTTCTAtttctttttttctt-----------------tctttctttctttct i chlSab2.chr10 C 0 I 69 s mm10.chr2 49739322 7 + 182113224 AAACACA-------------------------------------------------------- i mm10.chr2 C 0 C 0 s canFam3.chr19 50653143 15 + 53741614 AAAAAGAACCATCTA------------------------------------------------ i canFam3.chr19 C 0 C 0 e calJac3.chr6 87895474 0 - 158406734 C a score=5061.000000 s hg38.chr2_GL582966v2_alt 66732 6 + 96131 aagatg s panTro4.chr2B 153179526 6 + 247518478 aagacg i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38386104 6 + 135000294 aagacg i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82338581 6 - 85365473 aagacg i nomLeu3.chr20 C 0 C 0 s macFas5.chr12 37653966 6 + 132586672 gagaca i macFas5.chr12 C 0 I 1 s papAnu2.chr12 11311179 6 + 104110932 gagaca i papAnu2.chr12 I 7 I 1 s chlSab2.chr10 34411210 6 + 128595539 gagaca i chlSab2.chr10 I 69 I 1 s canFam3.chr19 50653158 1 + 53741614 --G--- i canFam3.chr19 C 0 C 0 e calJac3.chr6 87895474 0 - 158406734 C e mm10.chr2 49739329 0 + 182113224 C e rheMac3.chr12 11949893 277 + 106825570 I a score=144041.000000 s hg38.chr2_GL582966v2_alt 66738 75 + 96131 gagtctcgctctgttgcccaggctgaagtgcggtggcataatctcagttcactgcaacctccgcttccc-ggttcc s panTro4.chr2B 153179532 75 + 247518478 gagtctcgctctgttgcccaggctgaagtgcagtggcataatctcagttcactgcaacctccgcttccc-ggttcc i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38386110 75 + 135000294 gagtctcgccctgttgcccaggctggagtgcagtggcacaatctcagttcactgcaacctccgcctcct-ggttcc i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82338587 75 - 85365473 gagtctcactctgttgcctaggctggagtgcagtggcgcaatctcagttcactgcaacctccacctccc-ggttcc i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11950170 75 + 106825570 gagtctctctctgttgcccaggctggagtgcagt-ctgcgatctcagctcactgcaacgtccacctcccaggttcc i rheMac3.chr12 I 277 C 0 s macFas5.chr12 37653973 75 + 132586672 gagtctctctctgttgcccaggctggagtgcagt-ctgcgatctcagctcactgcaacctccacctcccaggttcc i macFas5.chr12 I 1 C 0 s papAnu2.chr12 11311186 75 + 104110932 gagtctctctctgttgcccaggctggagtgcagt-ccgcgacctcagctcactgcaacctccacctcccaggttcc i papAnu2.chr12 I 1 C 0 s chlSab2.chr10 34411217 75 + 128595539 gagtctctctctgttgcccaggctggagtgcagt-ccgcgatctcagctcactgcaacctccacctcccaggttcc i chlSab2.chr10 I 1 C 0 s mm10.chr2 49739329 32 + 182113224 -----------TGTTACCC----------------------------CACCCTGTGTCTGCTGCCTCCCAG----- i mm10.chr2 C 0 C 0 s canFam3.chr19 50653159 41 + 53741614 AAGT---------TTGCCC-------------------------CCATCCAATATCTGCTCCTCTTCCC-GTTTCC i canFam3.chr19 C 0 I 42 e calJac3.chr6 87895474 0 - 158406734 C a score=422362.000000 s hg38.chr2_GL582966v2_alt 66813 192 + 96131 agcgattctcctgcctcagcctcctgagtagctgggactatagatgcgtgtcaccacacctggctaatttttgta-ttttttagtagagatggggtttcaccatattggccaggctggtcttgaactcctgacctcgtgatctgtctacctcagcctcccaaaagtacaagagtcagccaccgtgcccagccT s panTro4.chr2B 153179607 192 + 247518478 agcgattctcctgcctcagcctcctgagtagctgggactatagatgtgtgtcaccacacctggctaatttttgta-ttttttagtagagatggggtttcaccatattggccaggctggtctcgaactcctgacctcgtgatctgtccacctcagcctcccaaaagttcaagagtgagctaccgtgcccagccT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38386185 192 + 135000294 agcgattctcctgcctcagcctcctgagtagctgggactataggtgcatgtcaccacacccggctaatttttgta-ttttttagtagatatggggtttcaccatattggccaggctggtctcaaactcctgacctcgtgatctgtccacctcaccctcccaaaagtacaagagtgagccaccatgcccagccT i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82338662 193 - 85365473 agcgattctcctgcctcagcctcctgagtagctgggactataggtgcgtgtcaccacacccagctaatttttgtatttttttagtagagatggggtttcaccatattggccaggctggtctcgaactcctgacctcgttatctgtacacctcagcctcccaaaagtacaagagtgagccactgtgcccagccT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11950245 192 + 106825570 agcgattctcctgcctcagcctcctgagtagctgggactacaggtgtgcatcaccacacccagataatttttgtc-ttttttagtagagatagggtttcaccatattggccaggctggtctccaactcctgacctcatgatccgactgcctcagcctcccaaaaatacagacatgagccaccgcgcccagcTT i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37654048 192 + 132586672 agcgattctcctgcctcagcctcctgagtagctgggactacaggtgtgcatcaccacacccagataatttttgtc-ttttttagtagagatagggtttcaccatattggccaggctggtctccaactcctgacctcatgatccgactgcctcagcctcccaaaaatacagacatgagccaccgtgcccagcTT i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11311261 192 + 104110932 agcgattctcctgcctcagcctcctgagtagctgggactacaggtgtgcatcaccacacccggataatttttgtc-ttttttagtagagatagggtttcaccatattggccaggctggtctccaactcctgacctcatgatccgactgcctcagcctctcaaaaatacagacatgagccaccgcgcccggctt i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34411292 192 + 128595539 agcgattctcctgcctcagcctcctgagtagctgggactacaggtgtgcatcaccacacccggctaatttttgtc-ttttttagtagagatagggtttcaccatattggccaggctggtctccaactcctgacctcatgatccgactgcctcagcctcccaaaaatacagacatgagccaccgcgcccggcTT i chlSab2.chr10 C 0 C 0 s mm10.chr2 49739361 97 + 182113224 ---------CTTTCCTCTGTCCACTCAGCTGACTGGGCCA---------------GCATCC---------------TCTCCTA----------------ACCCCATTGGCC-------TCTTGCTCTGCAAAGCTTGTC---------CCTGGGCTTGTCAGATATAT------------------------- i mm10.chr2 C 0 C 0 e canFam3.chr19 50653200 42 + 53741614 I e calJac3.chr6 87895474 0 - 158406734 C a score=286329.000000 s hg38.chr2_GL582966v2_alt 67005 98 + 96131 AAAAGGAGAGATTTCTGAGAGACCATCCCCACACTGAATCTGCTCATC--TTCCCA-TTTCCTCACAGTCCACCCAGTTACCCAAATCAGAATCCCCTGCT s panTro4.chr2B 153179799 98 + 247518478 AAAAGGAGAGATTTCTGAGAGACCGTCCCCACACTGAATCTGCTCATT--TTCCCA-TTTCCTCACAGTCCACCCAGTTACCCAAATCAGAATCCCCTGCT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38386377 98 + 135000294 AAAAGGAGAGATTTCTGAGAGACCATCCCCACACTGAATCTGCTCATC--TTCCCA-TTTCCTCACAGTCCATCCAGTTACCCAAATCAGAATCCCCTGCT i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82338855 99 - 85365473 AAAAGGAGAGATTTCTGAGAGACCGTCCCCACACTGAATCCGCTCATC--TTCCCATTTTCCTCACAGTCCACCCAGTTACCCAAATCAGAATCCCCTGCT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11950437 98 + 106825570 AAAAGGAGAGATTTCTAAGAGACCGTTCCCACCCTGAATCTGCTCATC--TTCCCA-TTTCCCCACAGTCCACCCAGTTATCCAAATCAGAATCCCTCACT i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37654240 98 + 132586672 AAAAGGAGAGATTTCTAAGAGACCGTTCCCACCCTGAATCTGCTCATC--TTCCCA-TTTCCCCACAGTCCACCCAGTTATCCAAATCAGAATCCCTCACT i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11311453 98 + 104110932 aaaaGGAGAGATTTCTAAGAGACCGTTCCCACCCTGAATCTGCTCATC--TTCCCA-TTTCCCCACAGTCCACCCAGTTACCCAAATCAGaatcccccact i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34411484 98 + 128595539 AAAAGGAGAGATTTCTAAGAGACCGTTCCCACCCTGAATCTGCTTATC--TTCCCA-TTTCCCCACAGTCCACCCAGTTACCCAAATCAGAATCCCCCACT i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87895474 98 - 158406734 AAAAGGAGAGATTTCTAAGAGACCATTCCCCCACTGAATCTGCTCATC--TTCCCA-TTTCCCCACAGTCTACCCAGCTACCCAAATCAGAATCCTCCACT i calJac3.chr6 C 0 C 0 s mm10.chr2 49739458 36 + 182113224 -------------------------------CTCTGGTGCTGCTTATCTGTTCTGA-TTGCC------------------------TTGGAA--------- i mm10.chr2 C 0 C 0 e canFam3.chr19 50653200 42 + 53741614 I a score=2121242.000000 s hg38.chr2_GL582966v2_alt 67103 618 + 96131 CCCCACCTCCTGACTCTAGTTGGTCACCAGAGCCGGTCCATTTCACCTGCCAGAGGCCCCTCTG-----------------------GTTCACTGTCC---AGGTTAACTAAGGACTGTGGCTACATCCAT-CTACCCATG---CCCACCCTCAGTCTGCTCTGGGCCAGCCACTGTGTGGCATCCTGAGGGATGATTCTAAAATTCACATTCTCTCTC-TGTCCAAACGGACACTTCTAACCCTTCCATGGCATCCTGTTGCTCTTAATATAAAGTTTGAACTGCC----GTGGCTTCCCTGGCAC----CCCCTTGAACAAGCTCTACCCTTTGCCAGCCAGCCTTGTGatctcctgagcttagggaagtgcctcgcacataggaagcacttcataaatattaatgaatATAAGCAGAAATTCAAGAGAAGGGTCTAGAAATGCAGAAAGTAGAACAGGA-TTAA-GAATGTATGTGCCATGCAATgtgaaactagaacatatata-tta------tgggttgcaatgaaaattgttagaattttctcagaaagccatttgaaaatacatattaataactgtaaca-tttttcataccttttgatcatcacacctcagatattcattgcaga-----atttt-----------agatcagcaaaaaagaggaagccatcta s panTro4.chr2B 153179897 618 + 247518478 CCCCACCTCCTGACTCTAGTTGGTCACCAGAGCCTGTCCATTTCACCTGCCAGAGGCCCCTCTG-----------------------GTTCACTGTCC---AGGTTAACTAAGGACTGTGGCTACATCCAT-CTACCCATG---CCCACCCTCAGTCTGCTCTGGGCCAGCCACTGTGTGGCATCCCAAGGGATGATCCTAAAATTCACATTCTCTCTC-TGTCCAAACCGACACTTCTAACCCTTCCATGGCATCCTGTTGCTCTTAATATAAAGTTTGAACTGCC----GTGGCTTCCCTGGCAC----CCCCTTGAACAAGCTCTACCCTTTGCCAGCCAGCCTTGTGatctcctgagcttagggaagtgcctcgcacataggaagcacttcataaatattaatgaatATAAGCAGAAATTCAAGAGAAGGGTCTAGAAATGCAGAAAGTAGAACAGGA-TTAA-GAATGTATGTGCCATGCAATgtgaaactagaacatatata-tta------tgggttgcaatgaaaattgttagaattttctcagaaagccatttgaaaatacatattaataactgtaaca-tttttcataccttttgatcatcacatctcagatattcattgcaga-----atttt-----------agatcagcaaaaaagaggaagccatcta i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38386475 613 + 135000294 CCCCACCTCCCGA--CTAGATGGTCACCAGAGCCTGTCCATTTCACCTGCCAGAGGCCCCTCTG-----------------------GTTCACTGTCC---AGGTTAACTAAGGACTGTGGCTACATCCAT-CTACCCATG---CCTACCCACAGTCTGCTCTGGACCAGCCACTGTGTGGCATCCCAAGGGATGATTCTAAAATTCACATTCTCTCTC-TGTCCAAACCGACACTTCTAACCCTTCCATGGCATCCTGTTGCTCTTAATATAAAGTTTGAACTGCC----GTGGCTTCCTTGGCAC----CCCCTTGAACAAGCTCTTTCCTTTGCCAGCCAGCCTTGTGatctcctgagcttagggaagtgcctcacacataggaagcacttcataaatatgaatgaatAGAAGCAGAAATTCAAGAAAAGGGTCTAGAAATGCAGAAAGTAGAACCGGA-TTAA-GAATGTATGTGCCATGCAATGTGAAACTAGAACACATATA-TTA------TGGGTTACAATGAAAATTGTTAGAATTTTTTCAGAAAGCCATTTGAAAATACATATTAATAACTGTAACA-TTTTTCATACCTTTTGATCATCACATCTGAGATATTCATTGCAGA-----ATTTT-----------AGATCAGC---AAAGAGGAAGCCGTCTA i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82338954 619 - 85365473 CCCCACCTCCTGACTCTAGTTGGTCACCAGAGCCTGTCCATTTCGCCTGCCAGAGGCCCCTCTG-----------------------GTTCACTGTCC---AGGTTAACTAAGGACTGTGGCTACATCCAT-CTACCCATG---CCCACCCTTAGTCTGCTCTGGGCCAGCCACTGTGTGGCATCCCAAGGGATGATTCTAAAATTCACATTCTCTCTC-TGTCCAAACCAACACTTCTAACCCTTCCATGGCATCCTGTTGCTCTTAATGTAAAGTTTGAACTGCC----GTGGCTTCCCTAGCAC----CCCCTTGAACAAGCTCTTCCCTTTGCCAGCCAGCCTTGTGatctcctgagcttatggaagtgcctcacacataggaagcacttcataaatatgaatgaatAGAAGCAGAAATTCAACAGAAGGGTCTAGAAATGCACAAAGTAGAACAGGA-TTAA-GAATGTATGTGCCATGCAATgtgaaactagaacatatatattta------tgggttgcaatgaaaattgttataattttctcagaaagccatttgaaaatacatattaatatttgtaaca-tttttcataccttttgatcatcacatctcagatattcattgcaga-----atttt-----------agatcagcaaaaaaaaggaagccatcta i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11950535 618 + 106825570 CCCCACCTCCTGACTCTAGTTGGTCACCAGAGCCTGTTCATTCCACCTGCCAGAGGCCTCTCTG-----------------------GTTCACTGTCC---AGGTTAACTAAGGACTGTGGCTATATCCAT-CTACCCATG---CCCACCCTCAGTCTGCTCTGGGCCAGCCACTGTGTGGCATCCCAAGGGATGATCCTAAAATTCACATTCTCTCTC-TGTCCAAACCGACACTTCTAACCCCTCCATGGCATCCCGTTGCTCTTAATATAAAGTTTGAACTGCT----GTGGCTTCGCGGGCAC----CTCCTTGAACAAGCTCTTCCCTTTGCCAGCCAGCCTTGTGatctcctgagcttagggaagtgcgtcacacataggaagcatttcataaatatgaatgaatagaAGCTGAGATTCAAGAGAAGGGACTAGAAATGCAGAAACTAGAACAGGA-TTAA-GAATGTATGTGCCATGTAATgtgaaactagaacatatata-tta------tgagttgcaatgaaaattgttacaattctttcagaaagccatttgaaaatacatactaataattataaca-tttttcataccttttgatcATCACATCTCAGATATTCATTGCAGA-----ATTTT-----------AGATCAGCAAAAAAGAGGAAGCCATCTA i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37654338 618 + 132586672 CCCCACCTCCTGACTCTAGTTGGTCACCAGAGCCTGTTCATTCCACCTGCCAGAGGCCTCTCTG-----------------------GTTCACTGTCC---AGGTTAACTAAGGACTGTGGCTATATCCAT-CTACCCATG---CCCACCCTCAGTCTGCTCTGGGCCAGCCACTGTGTGGCATCCCAAGGGATGATCCTAAAATTCACATTCTCTCTC-TGTCCAAACCGACACTTCTAACCCCTCCATGGCATCCCGTTGCTCTTAATATAAAGTTTGAACTGCC----GTGGCTTCGCTGGCAC----CTCCTTGAACAAGCTCTTCCCTTTGCCAGCCAGCCTTGTGATCTCCTGAGCTTAGGGAAGTGCGTCACACATAGGAAGCATTTCATAAATATGAATGAATAGAAGCTGAGATTCAAGAGAAGGGACTAGAAATGCAGAAACTAGAACAGGA-TTAA-GAATGTATGTGCCATGTAATgtgaaactagaacatatata-tta------tgagttgcaatgaaaattgttacaattctttcagaaagccatttgaaaatacatactaataattataaca-tttttcataccttttgatcatcacatctcagatattcattgcaga-----atttt-----------agatcagcaaaaaagaggaagccatcta i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11311551 618 + 104110932 ccccacctcctGACTCTAGTTGGTCACCAGAGCCTGTTCGTTCCACCTGCCAGAGGCCTCTCTG-----------------------GTTCACTGTCC---AGGTTAACTAAGGACTGTGGCTATATCCAT-CTACCCATG---CCCACCCTCAGTCTGCTCTGGGCCAGCCACTGTGTGGCATCCCAAGGgatgatcctaaaattcacattctctctc-tgtccaAACCGACACTTCTAACCCCTCCATGGCATCCCGTTGCTCTTAATATAAAGTTTCAACTGCC----ATGGCTTCGCTGGCAC----CTCCTTGAACAAGCTCTTCCCTTTGCCAGCCAGCCTTGTGATCTCCTGAGCTTAGGGAAGTGCGTCACACATAGGAAGCATTTCATAAATATGAATGAATAGAAGCTGAGATTCAAGAGAAGGGACTAGAAATGCAGAAACTAGAACAGGA-TTAA-GAATGTATGTGCCATGTAATGTGAAACTAGAACATATATA-TTA------TGAGTTGCAATGAAAATTGTTACAATTCTTTCAGAAAGCCATTTGAAAATACATACTAATAATTATAACA-TTTTTCATACCTTTTGATCATCACATCTCAGATATTCATTGCAGA-----ATTTT-----------AGATCAGCAAAAAAGAGGAAGCCATCTA i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34411582 618 + 128595539 CCCCACCTCCTGACTCTAGTTGGTCACCAGAGCCTGTTCATTCCATCTGCCAGAGGCCTGTCTG-----------------------GTTCACTGTCC---AGGTTAACTAAGGACTGTGGCTATATCCAT-CTACCCATG---CCCACCCTCAGTCTGCTCTGGGCCAGCCACTGTGTGGCATCCCAAGGGATGATCCTAAAATTCACATTCTCTCTC-TGTCCAAACCGACACTTCTAACCCCTCCATGGCATCCCATTGCTCTTAATATAAAGTTTGAACTGCC----GTGGCTTCACTGGCAC----CTCCTTGAACAAGCTCTTCCCTTTGCCAGCCAGCCTTGTGATCTCCTGAGCTTAGGGAAGTGCGTCACACATAGGAAGCATTTCATAAATATGAATGAATAGAAGCTGAGATTCAAGAGAAGGGACTAGAAATGCAGAAACTAGAACAGGA-TTAA-GAATGTATGTGCCATGTAATgtgaaactagaacatatata-tta------tgagttgcaatgaaaattgttacaattctttcagaaagccatttgaaaatacatactaataattataaca-tttttcataccttttgatcatcacatctcagatattcattgcaga-----atttt-----------agatcagcaaaaaagaggaagccatcta i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87895572 602 - 158406734 CCCTACCTCCTGTCTCTCCTTGGTCACCAGAGCCTGTCCATTCCACCTGCCAGAGGCGCCTCTG-----------------------GTTCACTGTCC---AGGCTAACCAAGGACTGTGGCTACAGTC---------------CCCACCCCCAGCCTGCTTTGGGCCAGCCACTGTGTGGCATCCCAAGGGAGGATTCTAAAATTCATATTCTCTCTT-GCTCCAGCCCTATGCTTCTAATTCCTCTATGGCATGCTGTTACTCTTAATATAAAGTTTGAACTGCT----GTGGATTTCCTGGCGC----CCCCTTGAACGAGTTCTTCCCTTTGCCGGCCAGCCTCGTGACCTCCTGAGCTTAGAGAGGT-CCTCACACATAGGAAGCACTTCATGAATATGAATGAATAGAAGCAGACATTTAAGAGAAGGGACTGGCAATGCAGAAACTAGAACAGGA-TTAA-GAATGTATGTGCTATGCAATGTGAAATTAGAGCGTATATA-TTA------TGGGTTGCAATGAAAATTCTTAGATTTCTTTTAGAAAGCCACTTGAAAATATATATTAATAATTGTAACA-TTTTTCATACCTTTTGATTATCACATCTC--ATATTCATTACAGA-----ATTTT-----------AGATCAGCAAAAA--AGGAAGCCATCTA i calJac3.chr6 C 0 C 0 s mm10.chr2 49739494 478 + 182113224 -------------------------------------------------------------------------------------------------C---AACCTAGTTAGTGATTGTGGCTAAATCAGTATTATTGAGGAGTCTCACTGCCA-TCTTCTCTGGACTGGTCACTCTACTGTGTCCC-AGGGGTGATTGTGAAATGCAAATTCTGTCTTATGGCAAACCCTATGGGTCGTGCCCTTCCTCGGGATTCCGT---TCTTGGACTAAG--------TGCT----A-GGCTT-----------------TTGAACAAGTTCTTCTctt--------agctgtgtg-------------------gtacctgatacacaggaaacacttaataaatCCGAGTAAACATAAGCAAATATT---GAGTGGCCATCAGAAGTGCAGAAACGAGGTCAGGGTTTAA-GAACAT-TGCAGTGTGTAGAATGAGAGCAG-TCACACAGA-TTG------AAGGCTGAAATGAAGATC------AGTTCTTTATAGAACAATGTG-------------ATAATTGTAACAGTTCTTCAGGCCATTTGAGCCTCAAAttttaagcatttattgcagagtttgatttt-----------atatttttaaagatgatgacgacgacga i mm10.chr2 C 0 I 402 s canFam3.chr19 50653242 656 + 53741614 CTCCACCTCCTGCCTCCGGTCTGTTACCACGACCTGCCCATTTGACCTGTCAGATGCGTGTCTGCTTTTGCTCATCCCCGCCTTTATTTTCACTATCCTTAATCCTAATTAAGACTTGAGGCTACATCCAC-CTACAGAGG---GTCTGTCTCCATCTGTTCCAGGCCAGCCGCTGTGCCGCATCCCAAGGAACTGTTCTAAAAT-CACATTCAATCTTGTGCCCAACCCCATGCCTCCGACCCTTCCTTGGTGTCCCACTGCTCTT--CACAGAGTCTGAGTTTCTCCCAATGGCTACGTGAACCCTCCACCCTTAGAACCAGCTCTTCCCTTGGCCAGGCAGCctcctgataccctctgcttagggaagtgcctgacacataggaatcacacaatacatatGAAGAAATAAGA----AATTTCAAGAGAGGTAACTAGAAACGCAGAAACCAGAACAGGA-TTAAGGGACATACACGTTGTG----GTGAAA-TAGAGCACACGTA-CCATGTACCTGAGTTGCAATGAAAATTGTTAGAGCCCTTT-GGAAGGCATTTTGAAAATAAATAGTAATAATCATAACA-CTTTCCATGCCTTTTGATCCTCAAATCTCAAATATTCATTGCGGA-----CTTCCTTGTATGGGAGGGAGGGGCAGAAA--AGGAAGCCACCTG i canFam3.chr19 I 42 C 0 a score=525894.000000 s hg38.chr2_GL582966v2_alt 67721 163 + 96131 --aatgtctaatagtTAATACACTATGGCGTGTTATTTAATAGAACTTTTT---CTT-CACAT-------GAAATACATGAAGG-TGTGCAGCaatgtttatgatgcaatgttaggtgaaa-atcacaatatatcattgtattcttactatggttataactattaaaaatgaatggat s panTro4.chr2B 153180515 163 + 247518478 --aatgtctaatagtTAACACACTATGGCGTGTTATTTAATAGAACTTTTT---CTT-CACAT-------GAAATACatgaaga-tgtgcagcaatgtttatgatgcaatgttaggtgaaa-atcacaatatatcattgtattcttactatggttataactattaaaaatgaatggat i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38387088 162 + 135000294 --AATGTCTAATAGTTAACACACTATGGCATGTTATTTAATAGAACTTTTT----TT-CACAT-------GAAATACATGAAGG-TGTGTAGCAATGTTTATGATGCAATGTTAGGTGAAA-ATCACAATATATCATTGTATCTTTACTATGGTTATAACTATTAAAAATGAATGGAT i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82339573 163 - 85365473 --aatgtctaatagtTAACACACCATGGCATGTTATTTAATAGAACTTTTT---TTT-CACAT-------GAAATACATGAAGG-TGTGCAGCaatgtttatgatgcaatgttaggtgaaa-atcacaatatatcattgtattcttactatggttataactattaaaaatGAATGGAT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11951153 164 + 106825570 --AGTGTCTAATAGCTAACACACTATGGTGTGTTATTTAATAGAACTTTTT---TTTCCACAT-------GAAATACGTGAAGG-TGTGCTACaatgtttatgatgcaatgttaggtgaaa-atcacaatatatcattgtatctttactatggttataactattaaaaatGAATGAAT i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37654956 163 + 132586672 --agtgtctaatagctaacacactatggtgtgttatttaatagaacttttt---ttt-cacat-------gaaatacgtgaagg-tgtgctacaatgtttatgatgcaatgttaggtgaaa-atcacaatatatcattgtatctttactatggttataactattaaaaatgaatgaat i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11312169 163 + 104110932 --AGTGTCTAATAGCTAACACACTATGGTGTGTTATTTAATAGAACttttt---ttt-CACAT-------GAAATACGTGAAGG-TGTGCTACAATGTTTATAATGCAATGTTAGGTGAAA-ATCACAATATATCATTGTATCTTTACTATGGTTATaactattaaaaatgaatgaat i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34412200 163 + 128595539 --agtgtctaatagctaacacactatggtgtgttatttaatagaacttttt---ttt-cacat-------gaaatacgtgaagg-tgtgctgcaatatttatgatgcaatgttaggtgaaa-atcacaatatatcattgtatctttactatggttataactattaaaaatgaatgaat i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87896174 166 - 158406734 --AATGTCTAATAGTTAGCACACTGTGGTGTGTTATTTAATAGAACGTTTTATTTTT-CACAC-------GATATACAAGAAGG-TGTGCAGCAATGTTTATGATGCAATGTTAGGTGAAA-ATTACAATATATCATTGTATCTTTACTATGGTTATAACTCTTAAAAATGAATGGAT i calJac3.chr6 C 0 C 0 s canFam3.chr19 50653898 174 + 53741614 AAAGTCCCAACAGGTGAACGAGCTATGGGACATTGCTTAACAGGACACGTG---TTT-TGTATGGGAGGCGAGGTATGTGGAGGCCGTGTAGCCATGCTTACAACGCAGCCTTAGATTAAAGGTCGTAACGTGTAATCTCATCTTTACCGTGGTTATAGCATTCAGGGATCAATGGTT i canFam3.chr19 C 0 I 97 e mm10.chr2 49739972 402 + 182113224 I a score=298280.000000 s hg38.chr2_GL582966v2_alt 67884 107 + 96131 gcagctgggcacggtggctcacgcctgtaatcccagcactttgcgaggctgaggcgggcggatcacgaggtcaggagttcgagaccagcctggccaacatggtgaaa s panTro4.chr2B 153180678 107 + 247518478 gcagccgggcacagtggctcacgcctgtaatcccagcactttgcgaggctgaggcgggcggatcacgaggtcaggagttcgagaccagcctggccaacatggtgaaa i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38387250 107 + 135000294 GCggccgggcatggcggctcacgcctgtaatcccagcactttgtgaggctgaggtgggtggatcacgaggtcaggagttcaagaccagcctgtccaacatggtgaaa i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82339736 107 - 85365473 GTGTctggtcatggtggctcacgcctgtaatcccagcactttgcgaggccgaggcgggtggatcacaaggtcaggagttcgagaccagcctggccaacatggtgaaa i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11951317 106 + 106825570 GCggctgggcatggtggctcacgcctgtaatcccagcgctttgcaaagccgaggtgggcagatcatgaggtcagaagtg-gagaccagcctggccaacatagtgaaa i rheMac3.chr12 C 0 M 300 s macFas5.chr12 37655119 106 + 132586672 gcggctgggcatggtggctcacgcctgtaatcccagcgctttgcaaagccgaggtgggcagatcatgaggtcagaagtg-gagaccagcctggccaacatagtgaaa i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11312332 106 + 104110932 gcggctgggcatagtggctcatgcctgtaatcccagcgctttgcaaggccgaggtgggcagatcatgaggtcaggagtg-gagaccagcctggccaacacagtgaaa i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34412363 107 + 128595539 gcggctgggcacggtggctcatgcctgtaatcctagcgctttgtgagaccgaggtgggtagatcatgaggtcaggagttcgagaccagcctggccaacatagtgaaa i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87896340 107 - 158406734 GTggctgagtgcagtggctcatgcctgtaatcccagcactttgggaggctgagatgggtggatcacaaggtcaggagttcaagagcagcctggccaatacggtgaaa i calJac3.chr6 C 0 C 0 e canFam3.chr19 50654072 97 + 53741614 I e mm10.chr2 49739972 402 + 182113224 I a score=312651.000000 s hg38.chr2_GL582966v2_alt 67991 144 + 96131 ccctgtctctactaaaaatacaaaaattagcagggtgtggtggcacacgcctgtaatcccagctactcaggaggctgaggaaggagaattgcttgaatccaggaggcggaggttgtaatgagccgatatcgtggcactgcactc s panTro4.chr2B 153180785 144 + 247518478 ccctgtctctactaaaaatacaaaaattagcagggtgtggtggcacacgcctgtaatcccagctactcaggaggccgaggaaggagaattgcttgaattcgggaggcggaggttgtaatgagccgatatcgtggcactgcactc i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38387357 144 + 135000294 ccctgtctctacttaaaaaacaaaaattagcggggtgtggtggcacacacctgtaatcccagctacttaggaggctgaggaaggagaatcgcttgaatccgggagacggagtttgtagtgagcggatatcgtgccactgcactc i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82339843 143 - 85365473 ccctgtctctactaaaaatacaaaaatcagcagggtgtggtggcacatgcctgtaatcccagctactcgggaggctgaggaaggagaatcac-tgcatccgggaggcggaggttgtagtgagccaatatcgtgccactgcactc i nomLeu3.chr20 C 0 C 0 s macFas5.chr12 37655225 144 + 132586672 acccgtctctactaaaaatacaaaaattagctgggcatggtggcagacgcctgtaatcccagctactcgggaggctgaggaaggagaatcgcttgaatccgggagccggaggttgtagtgagctgagatcatgctactgcactc i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11312438 144 + 104110932 ccccgtctctactaaaaatacaaaaattagctgggcatggcggcacacgcctgtaatcccagctactcgggagactgaggaaggagaatcgcttgaatccggcagccggaggttgtagtgagctgagatcatgccactgcactc i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34412470 144 + 128595539 ccccgtctctactaaaaatacaaaaattagctgggcatggtggcacaagcctgtaatcccagctactcgggaggctaaggaaggagaatcgcttgaatccgggagccagaggttgtagtgagctgagatcataccactgcactc i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87896447 144 - 158406734 aactgtctctactaaaaatacaaaaattagctgggtgtggtgatgcacgtctgtaatcccagctacttgggaggctgaggcaggagagccgcttgaaccggggaggcagaggttgtagtgagccgagatctcgccactgcactc i calJac3.chr6 C 0 C 0 e canFam3.chr19 50654072 97 + 53741614 I e mm10.chr2 49739972 402 + 182113224 I e rheMac3.chr12 11951423 300 + 106825570 M a score=69426.000000 s hg38.chr2_GL582966v2_alt 68135 33 + 96131 cagcctgggcgacagaacaagactccatcttga-------------- s panTro4.chr2B 153180929 33 + 247518478 cagcctgggcgacagaacaagactccatcttga-------------- i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38387501 33 + 135000294 cagcctgggcgacagaacaagactccatcttga-------------- i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82339986 33 - 85365473 cagcctgggcgacagaacaaggctccatcttga-------------- i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11951726 41 + 106825570 cagcctgggtgacagaacaagactccgtctagg------ggaaaaaa i rheMac3.chr12 M 300 C 0 s macFas5.chr12 37655369 41 + 132586672 cagcctgggtgacagaacaagactccgtctagg------gaaaaaaa i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11312582 47 + 104110932 cagcctgggtgacagaacaagacgccgtctaggaaaaaaaaaaaaaa i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34412614 45 + 128595539 cagcctgggtgacagaacaagactccgtctaga--aaaaaaaaaaaa i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87896591 37 - 158406734 cagcctgggcagcatagcaggtctcGGCGGGGT----------GGGG i calJac3.chr6 C 0 C 0 e canFam3.chr19 50654072 97 + 53741614 I e mm10.chr2 49739972 402 + 182113224 I a score=378562.000000 s hg38.chr2_GL582966v2_alt 68168 129 + 96131 aaaaaaaGTGAATGGATGCTTGTGTTCCTAAAAATTCATATTTAAGATAAAAGTGGTTGTGATAGGGTAGTTGGGATTGGTGATGCTGTTATCAGTATTTATATCCTTTATTGTTGTTTTA--CAGTTTGC s panTro4.chr2B 153180962 129 + 247518478 aaaaaaaGTGAATGGATGCTTGTGTTCCTAAAAATTCATATTTAAGATAAAAGTGGTTGTGATAGGGTAGTTGGGATTGGTGATGCTGTTATCAGTATTTATATCCTTTATTGTTGTTGTA--CAGTTTGC i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38387534 129 + 135000294 aaaaaaaGTGAATGGATGCTTGTGTTCCTAAAAATTCATATTTAAGATAAAAGTGGTTGTGATAGGGTAGTTGAGATTGGTGATGCTGTTATCAATATTTATATCCTTTATTATTGTTGTA--CAGTTTGC i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82340019 129 - 85365473 aaaaaaaGTGAATGGATGCTTGTGTTCCTAAAAATTCATATTTAAGATAAAAGTGGTTGTGATAGGGTAGTTGGGATTGGTGATGCTGTTATCAGTATTTATATCCTTTATTGTTGTTATA--CAGTTTGC i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11951767 128 + 106825570 aaaaaaaaaGAATGGATGCTTGCCTTCCTAGGAATTCATATTTAAGATAAAAGTGGTTGTGATAGGGTAGTTGGGA-TGGTGATGCTGTTATCAATTTTTATATCCTTTATTGTTGTTGTA--CAGTTTGC i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37655410 128 + 132586672 aaaaaaaaagaatggatgcttgcgttcctaggaattcatatttaagataaaagtggttgtgatagggtagttggga-tggtgatgctgttatcaatttttatatcctttattgttgttgta--cagtttgc i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11312629 128 + 104110932 aaaaaaaaagaatggatgctTGTGTTCCTAGGAATTCATATTTAAGATAAAAGTGGTTGTGTTAGGGTAGTTGGGA-TGGTGATGCTGTTATCaatttttatatcctttattGTTGTTGTA--CAGTTTGC i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34412659 128 + 128595539 aaaaaaaaagaatggatgaatgggttcctagaaattcatatttaaggtaaaagtggttctgatagggtagttggga-tggtgatgctgttatcaatttttatattctttattgttgttgta--cagtttgc i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87896628 121 - 158406734 TGGGGGGAAGAATAGATGTTTGTGTTCCTAGAAATTAATGTTTAAAATAAAAGCAGTTGTGATAAGGTAGTTGGGATTGGTGATGCTGTTACCAGTTTTTTTATCCTGTAT--TTG--------AGTTTGC i calJac3.chr6 C 0 C 0 s mm10.chr2 49740374 123 + 182113224 ACTAAAGATAAATGGATCCTTGTATTCTTAGaaattaatatttaaaataaaa-tCACTCTGAT-GAGTAG-TAGGATGGATGATGTTATTAT-----TTCATTCCTTTTATTTTCATTTAAAGCTATTTAC i mm10.chr2 I 402 C 0 e canFam3.chr19 50654072 97 + 53741614 I a score=131030.000000 s hg38.chr2_GL582966v2_alt 68297 39 + 96131 TCAGTAAATGCAATTTGTGTCAGACGCCAAGGCAAATTT s panTro4.chr2B 153181091 39 + 247518478 TCAGTAAATGCATTTTGTGTCAGATGCCAAGGCAAATTT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38387663 39 + 135000294 TCAGTAAATGTATTTTGTGTCAGATGCCAAGGCAAATTT i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82340148 39 - 85365473 TCAGTAAATGTATTTTGTGTCAGATGCCAAGGCAAACTT i nomLeu3.chr20 C 0 I 304 s rheMac3.chr12 11951895 39 + 106825570 TCAGTAAATACATTTTGTGTCAGATGCCAAGGCAGATTT i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37655538 39 + 132586672 tcagtaaataCATTTTGTGTCAGATGCCAAGGCAGATTT i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11312757 39 + 104110932 TcagtaaatacattttgtgtCAGATGCCAAGgcagattt i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34412787 39 + 128595539 tcagtaaataCATTTTGTGTCAGATGCCAAGGCAGATTT i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87896749 27 - 158406734 TCAGTAAATACATTTTGTGTCTGATGT------------ i calJac3.chr6 C 0 C 0 s mm10.chr2 49740497 38 + 182113224 TGGATAAATACATGCTGCATCAGGTCTAAAGGCAAATT- i mm10.chr2 C 0 C 0 s canFam3.chr19 50654169 37 + 53741614 TCAGTAAA--CATTGTGTTCCAAATGCCAAGGCAAATCT i canFam3.chr19 I 97 C 0 a score=3783352.000000 s hg38.chr2_GL582966v2_alt 68336 1149 + 96131 AAAAAGAAAGAACATACCCACTCT-CTGCTCTAACCTTGTAACATGTTCTTTGTGTGGTAACACATGGCATGTTAGGAGTAGG-TGCACCATC-AAAACTGCAC-ATGGAAAATCATGTTTCTCTCTTGCATCCGGTGGTTCCTGCAGTGGGGCCACTGAGTTGAAATA-AAATAG---AGGCAAGAAAACCTGAAGTGGAACAGACTAGAGAGAAA---TAATGAATTGAATGTCACTGTCGTAAAGCACTCTG----CCCCCTGGCACCCCAGCTCCCCAGCTGGGGCTGCCCATTGCACCTGGCTGGCAT--TTAGGGAGCACCATCGACCAAGCATATGCTGAGACAGGAGTGCCACACTGCAGCCCTGCCCCAAACATGGGGCCTTCTGGTTTAATCTCAAAAATGTTATGCTATCTTTCTGTTTCCCGTGTTCCCATCCTGGAAACAGAGTATGTTTTCCTGCCCCAGATTCTTAGAGAATAAAC-GCCTACCCATGGGAGGTAAATTAGGTCTTCCTAGAACTCCCATCA-TGGCATGGGTCCACAGGCCACCTAACAGTCACAGAGGGCTTTATCATCTGTAAGGCCCGTTCATGCACATGACCTT--GGG--CT-GCTCACAGAGACCAGGTGGGAAACAAGCCCTCCCAGGTGTGC--GGTGACATAAAGCCAG---AGTGCAGTCCTAGGAGGGCCGCCCCCAGTGAGCATTGTCCCCCAGTAAGCAT-TGTCCCCTGCAGTTGTCGCGCTCCCCCGTGGAAGGAATGCTTCAGGAGGGGGCAGCCTTGGCTTTAGCCAGAAGTCCTT--------GCCTG--TTCCTTTATGCCATGGTTGTAATTGCTGATA--TAAGCTGATGTTTCACTCTGTTGCCA------------TTTTTCTTGCTTTTT----------------GTTTTTTAATTTTTGCTTTTGGGTGTGAGTCCCACCAGTTAAGTCTTAAATCATCATTTAAAATTCAAAACAGAAAAAATGCACGAAGTCAGCTTCCAGGATAAGGAGAAGGAACATCTGACGCGGTTGCAGGATGCTGAAGAAATGAAGGTGTGTGTGGCTGCCCCTTCCATCAAGCCCAGTGTGCATTTGATGCATTTGGATT-GGAAATGCTTGTTCTAGGAAAATCTGTCACCTTCAGATCCGTATATGGCAA---GGGACAGGGGAGGGGC-------TGTTGTTGGGC s panTro4.chr2B 153181130 1149 + 247518478 AAAAAGAAAGAACATACCCACTCT-CTGCTCTAACCTTGTAACATGTTCTTTGTGTGGTAACACATGGCATGTTAGGAGTAGG-TGCACCATC-AAAACTGCAC-ATGGAAAATCATGTTTCTCTCTTGCATCCGGTGGTTTCTGCAGTGGGGCCACTGAGTTGAAATA-AAATAG---AGGCAAGAAAACCTGAAGTGGAACAGACTAGAGAGAAA---TAATGAATTGAATGTCACTGTCGTAAAGCACTCTG----CCCCCTGGCACCCCAGCTCCCCAGCTGGGGCTGCCCATTGCACCTGGCTGGCAT--TTAGGGAGCACCATCGACCAAGCATATGCTGAGACAGGAGTGCCACACTGCAGCCCTGCCCCAAACATGGGGCCTTCTGGTTTAATCTCAAAAATGTTATGCTATCTTTCTATTTCCCGTGTTCCCATCCTGGAAACAGACTATGTTTTCCTGCCCCAGATTCTTAGAGAATAAAC-GCCTACCCATGGGAGGTAAATTAGGTCTTCCTAGAACTCCCATCA-TGGCATGGGTCCACAGGCCACCTAACAGTCACAGAGGGCTTTATCATCTGTAAGGCCCGTTCATGCACATGACCTT--GGG--CT-GCTCACAGAGACCAGGTGGGAAACAAGCCCTCCCAGGTGTGC--GGTGACATAAAGCCAG---AGTGCAGTCCTAGGAGGGCCGCCCCCAGTGAGCATTGTCCCCCAGTGAGCAT-TGTCCCCTGCAATTGTCGCGCTCCCCCGTGGAAGGAATGCTGCAGGAGGGGGCAGCCTTGGCTTTAGCCAGAAGTCTTT--------GCCTG--TTCCTTTATGCCATGGTTGTAATTGCTGATA--TAAGCTGATGTTTCACTCTGTTGCCA------------TTTTTCTTGCTTTTT----------------GTTTTTTAATTTTTGCTTTTGGGTGTGAGTCCCACCAGTTAAGTCTTAAATCATCATTTAAAATTCAAAACAGAAAAAATGCACGAAGTCAGCTTCCAGGATAAGGAGAAGGAACATCTGACGCGGTTGCAGGATGCTGAAGAAATGAAGGTGTGTGTGGCTGCCCCTTCCATCAAGCCCAGTGTGCATTTGATGCATTTGGATT-GGAAATGCTTGTTCTAGGAAAATCTGTCACCTTCAGATCCGTGTATGGCAG---GGGACAGGGGAGGGGC-------TGTTGTTGGGC i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38387702 1122 + 135000294 AAAAAGAAAGAACATACCCACTCT-CTGCTCTACCCTTGTAACATGTTCTTTGTGTGGTAACACAT-GCATGTTAGGAGTAGG-TGCACCATC-AAAACTGCAC-ATGGAAAATCATGTTTCTCTCTTGCATCTGGAGGTTTCTGCAGTGGGGCCACTGAGTTGAAATA-AAATAG---AGGCAAGAAAACCTGAAGTGGAACAGACTAGAGAGAAA---TAATGAATTGAATGTCACTGTCGTAAAGCACTCTG----CCCCCTGGCACCCCAGCTCCCCAGCTGGGGCTGCCCATTGCAC----CTGGCAT--TCAGGGAGTACCATCGACCAAGCATGTGCTGAGACAGGAGTGCCACACTGCAGCCCTGCCCCAAACGTGGGGCCTTCTGGTTTAATCTCAAAAGTGTTATGCTATCTCTCTATTTCCCGTGTTCCCATCCT-----TAGAGTATGTTTTCCTGCCCCAGATTCTTAGAGAATAAAC-GCCTACCCATGGGAGGTAAATTAGGTCTTCCTAGAACTCCCATCA-TGGCATGGGTCCACAAGCCACCTAACAGTCACAGAGGGCTTTATCACCTGCAAGGCCCGTTCATGCACATGACCTT--GGG--CT-GCTCACAGAGACCAGGTGGGAAATAAGCCCTCCCAGCTGTGT--GGTGACATAAAGCCAG---AGTGCAGTCCTAGGAGGGCCGCCCCCAGTG-----------------AGCAT-TGTCCCCTACAGTTGTCACGCTCCCCTGTGGAAGGAATGCTGCAGGAGGGGGCAGCCTTGGCTTTAGCCGGAAGTCCTT--------GCCTG--TTCCTTTATGCCATGGTTGTAACTGCTGATA--TAAGTTGATGTTTCACTCTGTTGCCA------------TTTTTCTTGCTTTTT----------------GTTTTTTAATTTTTGCTTTTGGGTGTGAGTCCCACCAGTTAAGTCTTAAATCATCATTTAAAATTCAAAACAGAAAAAATGCACGAAGTCAGCTTCCAGGATAAGGAGAAGGAACATCTGACGCGGTTGCAGGATGCTGAAGAAATGAAGGTGTGTGTGGCTGCCCCTTCCATCAAGCCCAGTGTGCATTTGATGCATTTGGATT-GGAAATGCTTGTTCTAGGAAAATCTGTCACCTTCAGATCTGTGTATGGCAG---GGAACAGGGGAGGGGC-------TGTTGTTGGGC i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82340491 1120 - 85365473 aaaaagaaagaaCATACCCACTCT-CTGCTCTAACCTTGTAACATGTTCTTTGGGTGGTAACACAT-GGATGTTAGGAGTAAG-TGCACCATC-AAAACTGCAC-ATGGAAAATCATGTTTCTCTCTTGCATCCGGTGGTTTCTGCAGTGGGGCCATTGAATTGAAATA-AAATAG---AGACAAGAAAACCTGAAGTGGAACACACTAGAGAGAAA---TAATGAATTGAATGTCACTGTCGTAAAGCACTCTG----CCCCCTGGCACCCCAGCTCCCCAGCTGGGGCTGCCCATTGCCC----CTGGCAT--TCAGGGAGCACCATTGACCAAGCATATGCTGAGACAGGAGTGCCACACTGCAGCCCTGCCCCAAACGTGGGGCCTTCTGGTTTAATCTCAAAAGTGTTATGCTATCTTTCTATTTCCCGTGTTCTCATCCT-----TAGAGTATGTTTTCCTGCCCCAGATTCTTAGAGAATAAAC-GCCTGCCCTTGGGAGCTAAATTAGGTCTTCCTAGAACTCCCATCA-TAGCATGGGTCCACCGGCCACCTAACAGTCACAGAGGGCTTTATCATCTGCAAGGCCCGTTCATGCACATGACCTT--GGG--CT-GCTCACAGAGACCAGGTAGGAAACAAGCCCTCCCAGGTGTGC--GGTGACATAAAGCCAG---AGTGCAGTCCTAGGAGGACCGCCCCCACTC-----------------AGCAT-TGTCCCCTACAGTTGT---GCTCCCCCGTGGAAGGAATGCTGCAGGAGGGGGCAGCCTTGGCTTTAGCCAGAAGTCCTT--------GCCTG--TTCCTTTATGCTGTGGTTGTAACTGCTGATA--TAAGCTGGTGTTTCACTCTGTTGCCA------------TTTTTCTTGCTTTTT----------------GTTTTTTAATTTTTGCTTTTGGGTGTGAGTCCCCCCAGTTAAGTCTTAAATCATCATTTAAAATTCAAAACAGAAAAAATGCACGAAGTCAGCTTCCAGGATAAGGAGAAGGAACATCTGACGCGGTTGCAGGATGCTGAAGAAATGAAGGTGTGTGTGGCTGCCCCTTCCATCAAGCCCAGTGTGCATTTGATGCATTTGGATTGGGAAATGCTTGTTCTAGGAAAATCTGTCACCTTCAGATCTGTGTATGGCAG---GGGACAGGGGAGGGGC-------TGTTGTTGGGC i nomLeu3.chr20 I 304 C 0 s rheMac3.chr12 11951934 1126 + 106825570 AAAAAGAAAGAACATACCCACTCT-CTGCTCTAACCTCGTAACATGTTCTTTGTGTGGTAACACGT-GCATGTT---AGTAGG-TGCACCATCAAAAACTGCAC-ATGGAAAATCATGTTTCTCTCTTACATTCAGTGGTTTCTGCAGTGGGGCCACTGAGTTGAAATA-AAATAG---AGGCAAGAAAACCTGAAGTGGAACAGACCAGAGAGAAA---TAATGAATTGAATGTCACTGTCGTAAAGCACTCTG----CTCCCTGGCACCCCAGCTCCACAGCTGGGGCTGCCCATTGCAC----CTGGCAT--TCAGGGAGCGCCAGCAACCAAGCATATGCTGAGACAGGAGTGCCACACTGCAGCCCTGCCCCAAACGTGGGGCCTTCTGATTTAATCTCAAAAGTGTTATGCTATCTTTCCACTTCCCATGTTCCCATCCT-----TAGAGTATGTTTTCCTGCCCCAGATTCTTAGAGAATAAAC-GCCTACACATGGGAGGTAAAGTAGGTCTTCCTGGAACTCCCATCA-TGGCATGGGTCCACAGGCCACCTAACAGTCACAGAGGGCTTTATCATCTGCAAGGCCCATTTATGCACATGACCTT--GTG--CT-GATCACAGAGACCAGGTGGGAAACAAGCCCTCCCAGGTGTGC--GGTGACATAAAGCCAG---AGTGCAGTCCTAGGAGGACCGCCCCCCGCG-----------------AGCAT-TGTCCCCTACAGTTGCTGCGCTTCCCTGTGGAAGGAATGCCGCAGGAGGGGGCCGCCTTGGCTTTAGCCGGAAGTCCTT--------GCCTG--TTGCCTTATGCCGTGGTTGTAACTGCTGATA--TAAGCTGATGTTTCACTCGGTTGCCA------------ttttttttgctttttattttt---------attttttttatttttgattttGGGTGTGAGTCCCACCGGTTAAATCTTAAATCATCATTTAAAATTCAAAACAGAAAAAATGCACGAAGTCAGCTTCCAGGATAAGGAGAAGGAACATCTGACGCGGTTGCAGGATGCTGAGGAAATGAAGGTGCGTGTGACCGCCCCTTCCATTAAGCCCAGTGTGCATTTGATGCATTTGGATT-GGAAATGCTTGTTCTAGGAAAATCTGTCACCTTCAGATCTGTGTATGGCAG---GGGAGAGGGGAGAGGA--------GCTGCTGGGC i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37655577 1126 + 132586672 AAAAAGAAAGAACATACCCACTCT-CTGCTCTAACCTCGTAACATGTTCTTTGTGTGGTAACACGT-GCATGTT---AGTAGG-TGCACCATCAAAAACTGCAC-ATGGAAAATCATGTTTCTCTCTTACATTCAGTGGTTTCTGCAGTGGGGCCACTGAGTTGAAATA-AAATAG---AGGCAAGAAAACCTGAAGTGGAACAGACCAGAGAGAAA---TAATGAATTGAATGTCACTGTCGTAAAGCACTCTG----CTCCCTGGCACCCCAGCTCCACAGCTGGGGCTGCCCATTGCAC----CTGGCAT--TCAGGGAGCGCCAGCGACCAAGCATATGCTGAGACAGGAGTGCCACACTGCAGCCCTGCCCCAAACGTGGGGCCTTCTGATTTAATCTCAAAAGTGTTATGCTATCTTTCCACTTCCCATGTTCCCATCCT-----TAGAGTATGTTTTCCTGCCCCAGATTCTTAGAGAATGAAC-GCCTACACATGGGAGGTAAAGTAGGTCTTCCTGGAACCCCCATCA-TGGCATGGGTCCACAGGCCACCTAACAGTCACAGAGGGCTTTATCATCTGCAAGGCCCATTTATGCACATGACCTT--GTG--CT-GATCACAGAGACCAGGTGGGAAACAAGCCCTCCCAGGTGTGC--GGTGACATAAAGCCAG---AGTGCAGTCCTAGGAGGACCGCCCCCCGCG-----------------AGCAT-TGTCCCCTACAGTTGCTGCGCTTCCCTGTGGAAGGAATGCCGCAGGAGGGGGCCGCCTTGGCTTTAGCCGGAAGTCCTT--------GCCTG--TTGCTTTATGCCGTGGTTGTAACTGCTGATA--TAAGCTGATGTTTCACTCGGTTGCCA------------TTtttcttgctttttattttt---------atttttttaatttttgattttGGGTGTGAGTCCCACCGGTTAAATCTTAAATCATCATTTAAAATTCAAAACAGAAAAAATGCACGAAGTCAGCTTCCAGGATAAGGAGAAGGAACATCTGACGCGGTTGCAGGATGCTGAGGAAATGAAGGTGCGTGTGACCGCCCCTTCCATTAAGCCCAGTGTGCATTTGATGCATTTGGATT-GGAAATGCTTGTTCTAGGAAAATCTGTCACCTTCAGATCTGTGTATGGCAG---GGGAGAGGGGAGAGGA--------GCTGCTGGGC i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11312796 1123 + 104110932 aaaaagaaagaacataccCACTCT-CTGCTCTAACCTCGTAACATGTTCTTTGTGTGGTAACACGT-GCATGTT---AGTAGG-TGCACCATCAAAAACTGCAC-ATGGAAAATCATGTTTCTCTCTTGCATTCAGTGGTTTCTGCAGTGGGGCCACTGAGTTGAAATA-AAATAG---AGGCAAGAAAACCTGAAGTGGAACAGACTAGAGAGAAA---TAATGAATTGAATGTCACTGTCGTAAAGCACTCTG----CTCCCTGGCACCCCAGCTCCACAGCTGGGGCTGCCCATTGCAC----CTGGCAT--TCAGGGAGTGCCAGCGACCAAGCATATGCTGAGACAGGAGTGCCACACTGCAGCCCTGCCCCAAACGTGGGGCCTTCTGATTTAATCTCAAAAGTGTTATGCTATCTTTCTATTTCCTATGTTCCCATCCT-----TAGAGTATGTTTTCCTGCCCCAGATTCTTAGAGAATAAAT-GCCTACACATGGGAGGTAAAGTAGGTCTTCCTGGAACTCCCATCA-TGGCATGGGTCCACAGGCCACCTAACAGTCACAGAGGGCTTTATCATCTGCAAGGCCCATTTATGCACATGACCTT--GTG--CT-GATCACAGAGACCAGGTGGGAAACAAGCCCTCCCAGGTGTGC--GGTGACATAAAGCCAG---AGTGCAGTCCTAGGAGGACCGCCTCCCGTG-----------------AGCAT-TGTCCCCTACAGTTGCTGCACTTCCCTGTGGAAGGAATGCTGCAGGAGGAGGCAGCCTTGGCTTTAGCCAGAAGTCCTT--------GCCTG--TTGCTTTATGCCGTGGTTGTAACTGCTGATA--TAAGCTgatgtttcactctgttgcca------------tttttcttgc--tttattttt----------tttttttgatttttgattttggGTGTGAGTCCCACTGGTTAAATcttaaatcataatttaaaattgaaaacagaaaaaatgcatGAAGTCAGCTTCCAGGATAAGGAGAAGGAACATCTGACGCGGTTGCAGGATGCTGAGGAAATGAAGGTGCGTGTGACCGCCCCTTCCATTAAGCCCAGTGTGCATTTGATGCATTTGGATG-GGAAATGCTTGTTCTAGGAAAATCTGTCACCTTCAGATCTGTATAtggcag---gggagaggggagagga--------gctgCTGGGC i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34412826 1120 + 128595539 AAAAAGAAAGAACATACCCACTCT-CTGCTCTAACCTCGTAACATGTTCTTTGTGTGGTAACACGT-GCATGTT---AGTAGG-TGCACCATCAAAAACTGCAC-ATGGAAAATCACGTTTCTCTCTTGCGTTCAGTGGTCTCTGCAGTGGGGCCACTGAGTTGAAATA-AAATAG---AGGCAAGAAAACCTGAAGTGGAACAGACTAGAGAGAAA---TAATGAATTGAATGTCACTGTTGTAAAGCACTCTG----CTCCCTGGCACCCCAGCTCCACAGCTGGGGCTGCCCATTGCAC----CTGGCAT--TCAGAGAGCGCCAGCGACCAAGCATATGCTGAGACAGGAGTGCCACACTGCAGCCCTGCCCCAAACGTGGGGCCTTCTGATTTAATCTCAAAAGTGTTATGCTATCTTTCTATTTCCCATGTTCTCATCCT-----TAGAGTATGTTTTCCTGCCCCAGATTCTTAGAGAATAAAC-GCCTACACATGGGAGGTAAAGTAGGTCTTCCTGGAACTCCCATCA-TGGCATGGGTCCACAGGCCACTTAACAGTCACAGAGGGCATTATCATCTGCAAGGCCCATTTGTGCACATGACCTT--GTG--CT-GCTCACAGCGACCAGGTGGGAAACAAGCCCTCCCAGGTGTGC--AGTGACATAAAGCCAG---AGTGCAGTCCTAGGAGGACCGCC-CCCGTG-----------------AGCAT-TGTCCCCTACAGTTGCTGCACTTCCCTGTGGAAGGAATGCTGCAGGAGGGGGCAGCCTTGGCTTTGGCCAGAAGTCCTT--------GCCTG--TTGCTTTATGCCATGGTTTTAACTGCTGATA--TAAGCTGATGTTTCACTCTGTTGCCA------------TTTTTCTTGCTTTTTAT--------------TTTTTTTAATTTTTGATTTTGGGTGTGAGTCCCACCGGTTAAATCTTAAATCATCATTTAAAATTCAAAACAGAAAAAATGCACGAAGTCAGCTTCCAGGATAAGGAGAAGGAACATCTGACGCGGTTGCAGGATGCTGAGGAAATGAAGGTGCGTGTGACCGCCCCTTCCATTAAGCCCAGTGTGCATTTGATGCATTTGGATT-GGAAATGCTTGTTCTAGGAAAATCTGTCACCTTCAGATCTGTGTGTGGCAG---GGGAGAGGGGAGAGGA--------GCTGCTGGGC i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87896776 1086 - 158406734 ---------GAACATGCCCACTCT-CTGCTCTAATCTTGTCACATGTTCTTTGTGTG--------------GTTTGGAATAGG-TGCACCATCAAAAACTGCAC-GTGGAAAATAATGTTT--------------------TCTGCACTGGGGCCACGTAGTTGAAATA-AAATAG---AGACAAGGAAACCTAAAGTAGAACAGACTATGGAGAAA---TAATGAGTTAAATGTCACTGTTGTAAACCACTCTG----CTCCCTGGCACCCCAACTCCCCAGCTGGGGCTGCTCATTGCAC----CTGGCAT--TCAGGGAGCGCCATCGACCAAGCATATGCTGAGACAGGAGTGCCACACTGCAGCCCTGCCCCAAATGTGGGGCCTTCTGGTTTAATCTCAGAAGTGTTGTATTATACTTCTATTTCCT-TGTTCCCATCCT------------------TCTGCCCCAGCTTCTTAGAGAATAAACAGCCTACCCATGGGAGGTAAATTAGGTCTTTCTGGAAATCCCATCA-TGGCCTGGGTCCACAGGCCACCTAACAGTCACAGAGGGCTTTCTCATCTGCAAGCCCAGTATATGCACATGACCTT--GGG--TT-GCTCACAGAGACCAGGTGGGAGACAAGCCCTCCCAAGTGGGT--GGTGACATGAAGCTGA---AGTGCAGTCCTAGGAGGGCCATCCCCAGTG-----------------AGCAT-TTTCCCCTATAGTTGCTGCACTCCCCCACGGAAGGAATGCCACGGCAGGGGTCAGCCTTGGCTTTAGCCAGAAGTCCTT--------ACCTG--TCCCTTTACGCCACGGTTGTAACTGCTGACA--TAAGCTGATGTTTCACtctgttgcca------------tttttcttgttttttttttttt-----tgttttgttttaatttttgcttttgGGTGTGAATCCTGCTAGTTAAATCTTAAATAATCATTTAAAATTCAAAACAGAAAAAATGCACGAAGTCAGCTTCCAGGATAAGGAGAAGGAACATCTGACGCGGTTGCAGGATGCGGAGGAAATGAAGGTGTGTGTGGCCGCCCCTACCGTCAAGCCCAGTGTGCATGTGATGCATTTGAACT-GGAAATGCTTATTTCAGGAAAACCTGTCAGCTTTAGATCCGTGTATGGCAG---TGTAGAGGGGAGGGGAGGAGGTCCACTGTGGGGT i calJac3.chr6 C 0 C 0 s mm10.chr2 49740535 957 + 182113224 AAGAAGAAAGGG----------CC-CTGCCATAGCTTTGTAACATTTTATTT-TGTGGTAAGGAAT-GGACTTTGGAGTAAAG-CACGCCTCCCAATACTGGACAAAGAAAAAGCATTTTCCTGTCTTGCAT---ATATTTGCTGCAGTGGGGACACTGAATAGAAATATAAACAGAAAAGGCCTGAAA---TAAAGTAAAATAGACTA--GAGGAA---TGATGAGTCGGATGTCAATGCCCAAACGACATTTG----CTCCC---CACCCCA----CACAGCT--CACTGCCC-TTGCAC-------ACATGCTCAGGGAACCCCAT-------GAGGGCACAGAGACAGGAGTGCTG-GTCACAGCCCTGCCC---ACCTGGGGCCCCCTGG-TGAATCCAGAAAGTGTTAGA------GTTTGTTTCCCTAGTTTTCATCTT-----TAG--CTTGTTTCCCTGCTCCAGATTCTTAGAAAATCAAC-AGCTACTCCTGGGAGGTAAATTAACTCCTTGTGGAATCTTCCCGG-TGACACGAATCCAGATGTCACCTCAAGCTCACAG-GGGCTTTATAATCTGC--------------------ACCCTCAGGG--CTGGCTCCCAGAGGCCAGGTGGGAAGCGA----TTCTGGGTCTGCCTGCTTCCAGGCAACCCC---TTCCTTTCCCTAGGGATGCAATCCACTCTG-----------------------CGTCCCAAGTACT------------------AACACAGGCCAAAGGAGAGGTCAGCCCGAGATGTTG-----GGTGTTT--------GCCAGGCTCCCCCTACTCCATGCCAGCATTTG---------------------CACTGTGCTG------------------TTATGGTTTTGT----------------TTTGCTGAATTTTTGCTTCAGGGTACGAGCCCTGCAAGTTAAAACTCCAGTCACTTTTTACTGTTTGAAACAGAAAAAATGCACGAAGTCAGTTTCCAAGATAAGGAAAAGGAGCACCTGACGAGGCTGCAGGATGCTGAGGAGGTGAAGGTGAGT-------------------------GTGTGCA-------CATCTGGAAT-G--------------------ATCTGTCCCC---AGACCTGTGCATGTCAGTCAGACAGGGAGAAGAGGA-----CCCATGGCTGGGC i mm10.chr2 C 0 I 29 s canFam3.chr19 50654206 1071 + 53741614 AAAAAGATAGAGGACATCCTCCCTCCCGCTATGACCTTGTCACGTTTTCTTTATGGGATAACGGAT-GAATGTTAGAGATAGGATGCTCCCCTTAAGACCTGAC-GTGGAAAAGAACTTTTCTGTCTCATA---AATGGCGTCTGTGGTGGAGCCACTG-----------AAATAA---AGT----------------------GACTAGATCGAAAGCGTAGTGACTTGAATGACACTGTTCTACACCGTTGTGCAGCCCCCCTCGCAGCCCTGC-CCGCTGCT-----TGCTCGGTGCCC-------------TCAGCCACTGCCCCTGACCAAGAACAGGCCGGGAC-GGACTCCC--CCTGCAGGGGTGCCTCGAACACGGGGCCCTCCTGTTTAATCTGGGGTGTGTTATTTTATATTCCTGTTTTCTTTGTTCTGATCCT-----TAGATTGCATTTTCCTGCTCCAGATTCTTAGAGAATAAACAGCTTACCCACGGGAGGTACATTAGTTCTTTCTGGAACTCTGAAGAGTGGCGTGCAGCCAAATGCCAC-TAACCTTCACAGAGTGCTTTATAACCCAC-AGAACGGTTGAGGTGCACTGCCCC--GGGGCTT-GCTCACTGAGGCCGGGTGTGA-----------------------GGTCATACGCAGCCTGGTCAGTTCTGACCCCGAGTGGCCCCCGCCCAAG---------------TCAGCCTCTGCCCCCTCCAGGCGCC---CTCCCC-----------TCCCGCTGGCGTGGGAGGCCTC--CTTTAGCCGAAGGTCTCCCTTGGGAGGCCCA--TCCTAGGATAGCGTGGTTGTAATTGGTGATATGTGAGCGCATGTTTCACTCCATGGCCATCCCttttttttttttttttgtcttttatcatttaaaaaaaaattttttt--tCTTTACTTTTGGATGTGAGTCCTGCCAGTTAGATCTTAACTCATCATTTAAAATCCAAAACAGAAAAGATGCACGAAGTCAGCTTCCAGGATAAGGAGAAGGAACATCTGACGCGGCTGCAGGACGCAGAGGAAATGAAGGTGTGTGCG-CCGCCCCTTCCCCGGCGCCCAGCGTG---------CGTTTGGACT-GCGTTTTCTGATTCTAGGAAAATCTGTCTCCTTCAGAGATGCGTGTGGCCG---TGCAGGAGGGGAGGGG-------------TGGG- i canFam3.chr19 C 0 C 0 a score=131790.000000 s hg38.chr2_GL582966v2_alt 69485 46 + 96131 ATTCAGAGTCGATCTCAG--AGTATAGCCTGGCTTAG-----AAATGAACAAG------ s panTro4.chr2B 153182279 46 + 247518478 ATTCAGAGTCGATCTCAG--AGTATAGTCTGGCTTAG-----AAATGAACAAG------ i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38388824 46 + 135000294 ATTCAGAGTCGATCTCAG--AGTATAGTCTGTCTTAG-----AAATGAACAAG------ i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82341611 46 - 85365473 ATTCAGAGTTGATCTCAG--AGTATAGTCTGGCTTAG-----AAATGAACAAG------ i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11953060 46 + 106825570 ACTCAGAGTCCATCTCAG--AGTGTGGTCTGGCTTAG-----ACATGAGCAAG------ i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37656703 46 + 132586672 ACTCAGAGTCCATCTCAG--AGTGTGGTCTGGCTTAG-----AAATGAGCAAG------ i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11313919 46 + 104110932 ACTCAGAGTCCATCTCAG--AGTGTGGTCTGGCTTAG-----AAATGAACAAG------ i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34413946 46 + 128595539 ACTCAGAGTCCATCTCAG--AGTGTGGTCTGGCTTAG-----AAATGAACAAG------ i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87897862 44 - 158406734 ATTCAGAGTTGATCTCAG--AGTGTGGCCTGGCTTAG-----AAATGAACA-------- i calJac3.chr6 C 0 C 0 s canFam3.chr19 50655277 55 + 53741614 ----GGGAGCGGTGCCAGGCAGTGTGGCCTGGCGTAGGACTCAGATGAAGACGGACGTG i canFam3.chr19 C 0 C 0 e mm10.chr2 49741492 29 + 182113224 I a score=262754.000000 s hg38.chr2_GL582966v2_alt 69531 75 + 96131 TCCAGAAACCCCAAGATGTCTGTAGAGAATGGTTAAGTTGCGTTAATACCTTTGTCTTCACCATTCCTGATGAAG s panTro4.chr2B 153182325 75 + 247518478 TCCAGAAACCCCAAGATGTCTGTAGAGAATGGTTAAGTTGCGTTAATACCTTTGTCTTCACCATTCCTGATGAAG i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38388870 75 + 135000294 TCCAGAAACCCCAAGATGTCTATAGAGAATGGTTAAGTTGCATTAATACCTTTGTCTTCCCCATTCCTGATGAAC i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82341657 75 - 85365473 TCCAGAAACCCCAAGATGTCTGTAGAAAATGGTTAAGTTGCGTTAATACCTTTGTCTTCCCCATTCCTGATGAAG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11953106 75 + 106825570 TCCCGAAACGCCAAGATGTCTGTAGAGAATGGTTAAGTTGCGTTAATACCTTTGTCTTCCCCATTCCTGATGAAG i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37656749 75 + 132586672 TCCCGAAACGCCAAGATGTCTGTAGAGAATGGTTAAGTTGCGTTAATACCTTTGTCTTCCCCATTCCTGATGAAG i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11313965 75 + 104110932 TCCCGAAACCCCAAGATGTCTGTAGAGAATGGTTAAGTTGTGTTAATACCTTTGTCTTCCCCATTCCTGATGAAG i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34413992 75 + 128595539 TCCCGAAACCCCAAGATGTCTGTAGAGAATGGTTAAGTTGCGTTAATACCTTTGTCTTCCTCATTCCTGATGAAG i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87897906 71 - 158406734 ----GAGACCCCAACATGTCTGTAGAGGATGGTTAAGTTGTGTTAATACGGTTGTCTTCCCCATTCCTGATGAAG i calJac3.chr6 C 0 C 0 s mm10.chr2 49741521 74 + 182113224 TGCAGGAAGCCAGAAGTGTCTCT-GCATACACCTACGCTGCACTAATGTCTTTGTGCTCCCTGCTCCTGAagggg i mm10.chr2 I 29 I 6 s canFam3.chr19 50655332 73 + 53741614 -TCCAGAACCCGGAGAGGTCCGTAGCCAATAGTC-TGTTGCATTCACACGTGCTTCTTCCCTGCTCCTGGGGGAG i canFam3.chr19 C 0 C 0 a score=1531626.000000 s hg38.chr2_GL582966v2_alt 69606 462 + 96131 AGGGAAAGGGTAGCACCCCCAATCACTGCATGGGCTCTTTTGTCGGAGTTAACTTCTAAGGATTT-------CTTCCTCCAA-------------------------------CCTTTACGCAGAA-CACACCAAATTTGAGTTTCTATCTCAAACATAGAGATTTTT-CTTTTGGTCACATTTTAAACTGTAAAGGAAAAT----------TGATTGTGGAGTAAGACTTTTAGGTGAATAAAATGAGACAGGAGAAGATGTAGGATTTTGATTAGTTGTAGGCAAACTATGAGCCTCATTGAGTCAAGGTCCACAGTTAAA--GACGTCCACGGCATGCCCTTGCTCCAGCCAGCAGAATAAAATCATGCGTCGTGGGAGTCCctttcctgttttcagagtgctgttgccaaaaggtctcctttggacatcatcataaatctgtgcagtgggcagggcaggggcttttatctcagttttacatgtgagggagtgcagctcacacaggttaca s panTro4.chr2B 153182400 462 + 247518478 AGGGAAAGGGTAGCACCCCCAATCACTGCATGGGCTCTTTTGTCGGAGTTAACTTCTAAGGATTT-------CTTCCTCCAA-------------------------------CCTTTACGCAGAA-CACACCAAATTTGAGTTTCTATCTCAAACATAGAGATTTTT-CTTTTGGTCACATTTTAAACTGTAAAGGAAAAT----------TGATTGTGGAGTAAGACTTTTAGGTGAATAAAATGAGACAGGAGAAGATGTAGGATTTTGATTAGTTGTAGGCAAACTATGAGCCTCATTGAGTCAAGGTCCACAGTTAAA--GACGTCCACGGCATGCCCTTGCTCCAGCCAGCAGAATAAAATCATGCGTCGTGGGAGTCCctttcctgttttcagagtgctgttgccaaaaggtctcctttggacatcatcataaatctgtgcagtgggcagggcaggggcttttatctcagttttacatgtgagggagtgcagctcacacaggttaca i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38388945 462 + 135000294 AGGGAAAGGGTAGCACCCCCAATCACTGCATGGGCTCTTTTGTTGGAGTTAACTTCTAAAGATTT-------CTTTCTCCAA-------------------------------CCTTTACGAAGAA-CACACCAAATTTGAGTTTCTATCTCAAACATAGAGATTTTT-CTTTTGGTCACATTTTAAACTGTAAAGGAAAAT----------TGATTGGGGAGTAAGACTTTTAGGTGAATAAAATGAGACAGGAGAAGATGTAGGATTTTGATTAGTTGTAGGCAAACTATGAGCCTCATTGAGTCAAAGTCCACAGTTAAA--GACGTCCACGGCATGCCCCTGCTCCAGCCAGCAGAATAAAATCATGCGTCGTGGGAGTCCctttcctgttttcggagtgcttttgccaaaaggtctcctttggacatcatcataaatctgttcagtgggcagggcaggggcttttatctcagttttacatgtgagggagtgcagctcacacaggttaca i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82341732 462 - 85365473 AGGGAAAGGGTAGCACCCCCGATCACTGCATGGGCTCTTTTGTCGGAGTTAACTTCTAAGGATTT-------CTTCCTCCAA-------------------------------CCTTTACGAAGAA-CACACCAAATTTGAGTTTCTGTCTCAAACATAGAGATTTTT-CTTTTGGTCACATTTTAAACTGTAAAGGAAAAT----------TGATTGGGGAGTAAGACTTTTAGGTGAATAAAATGAGACAGGAGACGATGTAGGATTTTGATTAGTTGTAGGCAAACTATGAGCCTCATTGAGTCAAAGTCCACAGTTAAA--GACGTCCACGGCATGCCCCTGCCCCAGCCAGCAGAATAAACTCATGCATCATGGGAGTCCctttcctgttttcagggtgctttggccgagaggtctcctttggacatcatcataaatctgtgcagtgggcagggcaggggcttttatctcagttttacatgtgagggagtgcagctcgcacaggttaca i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11953181 464 + 106825570 AGGGATAGGGTAGCACCCCCAATCACTGCATGAGCTCTTTTGTCGGAGTTAACTTCTAAGGATTT-------CTTCCTCCAA-------------------------------CCTTTATGAAGAA-CACACCAAATTTGAGTTTCTATCTCAAACACAGAGATTTTT-CTTTTGGTCACATTTTAAAGAGTAAAGGAAAAT----------TGATTGGGGAGTAAGACTTTTAGGTGAATAAAATGAGACAGGAGAAGATGTAGGATTTTGATTAGTTGTAGGCAAACTATGAGCCTCACTGAGTCAAAGTCCACAGTTAAAGTGATGTCCACGGCATGCCCCTACTCCAGCCAGCAGAATAAAATCATGCCTTGTGGGAGTCCctttcctgtcttcagagtgttttggcagaaaggtctcctttggacatcatcataaatctgtacagcgggcagggcaggggcttttatcttaattttacaggtgagggagtgcagctcacacaggttaca i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37656824 464 + 132586672 AGGGATAGGGTAGCACCCCCAATCACTGCATGAGCTCTTTTGTCGGAGTTAACTTCTAAGGATTT-------CTTCCTCCAA-------------------------------CCTTTATGAAGAA-CACACCAAATTTGAGTTTCTATCTCAAACACAGAGATTTTT-CTTTTGGTCACATTTTAAAGAGTAAAGGAAAAT----------TGATTGGGGAGTAAGACTTTTAGGTGAATAAAATGAGACAGGAGAAGATGTAGGATTTTGATTAGTTGTAGGCAAACTATGAGCCTCACTGAGTCAAAGTCCACAGTTAAAGTGATGTCCACGGCATGCCCCTACTCCAGCCAGCAGAATAAAATCATGCCTTGTGGGAGTCCctttcctgtcttcagagtgttttggcagaaaggtctcctttggacatcatcataaatctgtacagcgggcagggcaggggcttttatcttaattttacaggtgagggagtgcagctcacacaggttaca i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11314040 451 + 104110932 AGGGATAGGGTAGCACCCCCAATCACTGCATGGGCTCTTTTGTCGGAGTTAACTTCTAAGGATTT-------CTTCCTTCAA-------------------------------CCTTTATGAAGAA-CACACCAAATTTGAGTTTCTATCTCAAACACGGAGATTTTT-CTTTTGGTCACATTTTAAAGAGTAAAGGAAAAT----------TGATTGGGGAGTAAGACTTTTAGGTGAATAAAATGAGACAGGAGAAGATGTAGGATTTTGATTAGTTGTAGGCAAACTATGAGCCTCACTGAGTCAAAGTCCACAGTTAAAGTGATGTCCACGGCATGCCCCTACTCCAGCCAGCAGAATAAAATCATGCCTTGTGGGAGTCCCTTTCCTGTCTT-------------CAGAAAGGTCTCCTTTGGACATCATCATAAATCTGTACAGCGGGCAGGGCAGGGGcttttatcttaattttacagGTGAGGGAGTGCAGCTCACACAGGTTACA i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34414067 464 + 128595539 AGGGATAGGGTAGCACCCCCAATCACTGCATGGGCTCTTTTGTCGGAGTTAACTTCTAAGGATTT-------CTTCCTCCAA-------------------------------CCTTTATGAAGAA-CACACCACATTTGAGTTTCTATCTCAAACACAGAGATTTTT-CTTTTGGTCACATTTTAAAGAGTAAAGGAAAAT----------GGATTGGGGAGTAAGACTTTTAGGTGAATAAAATGAGGCAGGAGAAGATGTAGGATTTTGATTAGTTGTAGGCAAACTATGAGCCTCACTGAGTCAAAGTCCACAGTTAAAGTGATGTCCACGGCATGCCCCTACTCCAGCCAGCAGAATAAAATCATGCCTTGTGGGAGTCCctttcctgtcttcagagtgttttggcagaaaggtctcctttggacatcatcataaatctgtacagcgggcagggcaggggcttttatctcaattttacaggtgagggagtgcagctcacacaggttacg i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87897977 462 - 158406734 AGGGAAAGGGTAGCACTCCCAATCACTGCATGGGCTCTTTTGTCAGAGTTAACATCTAAGATTTT-------TTTTCTCCAA-------------------------------CCTTTATAAAGAA-CACACCAGATTTGAGTTTCCATCTTAAACATAGAGATTTTT-ATTTTGGCCGCATTTTAAAGGGTAAAGGAAAAT----------TGATTGGGAAGTAAGACTTTTAGGTGAATAAAATGAGACAGGAGAAGATGGAGGATTTTGATTAGTTGTAGGCAAACTATGAGCCTCACTGAGTCAAAGCCCACAGTTAAAGTGATGTCCACGGCATGTCCCTGCTCCAGCCAGCAGAATAAAGTCACGCCTTGTGTGAGTCCCTCTCCTgttttcagagtgcttt-gcagaaaggtctcctttgaacatcatcatgaatctgtgcagcgggaagggcaggggctcttatctcaa-ttcacaggtgagggggtgcagctcacacaggttacg i calJac3.chr6 C 0 C 0 s canFam3.chr19 50655405 484 + 53741614 ACGGAGAGAGCAGCCCCTCCGCTCGCTGCAGGGGCCACAGCACTGAGGTGCTCTCCTCAGGAAGTGGCGGCCCTTCCTTTGAGTCAAAGAACCACCCCTCCCGCCCCCGTTGCCCTTATTAAAGAAGCACTCCAGATTTGAATTTCCATTTT--ACACTGAGATCTTTATTTTTGGTCATATTTAATGTAGTCAAGGAGAATGTAGGAAAAATGATTGGGAAATAAGATATTTAGGTGAATTAAATGAGATAGGAGAAGACGTAGAATCCTGATTCATTTTGGGCCAACCGCAGGTCCTTTGGGGTGTAAGCCCATAGTTGAAACAGTGCCCGTGGCCTGATCCTGCTCCAGCCCG--------------ACTTTGCTGG-GTCCTTCGCCTGGTTTCACATTGCTTTGGCGCAAAGGTCTCCTTTGCACATCACCAT-AATCTGTGCAGGGGCCAGGGCAGGGACGGT----TCAGTTTCACGGGTGCGTACGTGTGGGTTACGT-------- i canFam3.chr19 C 0 C 0 e mm10.chr2 49741595 6 + 182113224 I a score=6195796.000000 s hg38.chr2_GL582966v2_alt 70068 1820 + 96131 ggcttatctggaggttacgtggatagggagaggTTGGTGCCCTCTGACTGACCTGG--------------------CTGGAGA------AGCTCAGGCT----------GGGCTGTAAAAGGTCAAGGGAACACTTTTTATTTAGTTGGTGGGCTAATTGGCTTCTAGGGCCAACTTGGTTTGATAACAGA-TCT-TGGGTTTTGTTATCCCAATAAAGCAAGGCCGGGTCCTGGGGGCAAAACAGCCAGAAATGCCCCCAGTTTTGGGATCTGACATCTGAGGGACACAGGGAAGGAGGTAGGTCCAGATCCAGGGCTTGTCACAGAGTGGGCTGAGTGCCAACGAGTAGATG-ACATGTTTCTCTTGGCCTGGGATGCAGAAGGCGCTGGAGCAGCAGATGGAGAGCCACCGGGAAGCTCACCAGAAGCAGCTGTCCAGACTCCGAGACGAAATTGAGGAGAAGCAGAAAATCATTGATGAGATTCGGGAGTGAGTCGGCCCAGGGCAC-------CAGGG-----GTGTGGGGGTGGTCATGCCTCGGTCCTCTTGGGGAAGCCTGGAAGGATGTGGCTCTTAGTCGAGGGCCCTGCTCACCTTGCCCTGTGGGCACTGC------CCTGGTGACACAGCAGGCTGGGCGGGCTGCTTCCAAGGTCTGTTCTCCGATCTGGAGCTGAGC----------CTCCTGGAGCCCTGGCATGGCAGGTGGCAGGCGGGCCCAGCTGCCTCTCC----TAGT-CCCCGAG----GGCCAGGGTCACATAGGTGATTCCGCTGGATGGACGCATGCCCCAGTAGAT-GGGGGGGAGCATCTGTAATGAAAGCACCaaaaaaaaaaaaaaaaaa--gaaaagaaaagaaaagaaaaaaaaaaaaTTTGGTCCTGACTACAGGATTCTAGTAGGTTAATAAACACT-------------------CGAGAGAAGAC-----AGCACCACCGCCTCC--CCTTCTCCCCCTACACATACACGCTCACTGGGCAA-CC-C--AGCCACCTGGTTCCATGTGCTCACTTCTTAGGGCCCCACACTGTCATGTGTCTGTGCAGGTAGAGGTGCCAGTG-ACCTGTGGCACTGCCACCAGGATGGCATCATTGCAGTTTCTCTC--------AGGTGACACCCCCTCAT-GTTGTGCTCCTGCCTTGTC--GCAGCCTCTGACATGCCCTC-------------------------------------------------------------------------------------------------------------------------------TGCTCCTt--------------------------------------cagaataatgttttcaaatgctctgcat-aaaagacctgggattacaaagaaaaccaattatattgaaatgcTGACCTCCCCAC------CCCCACCCCACC--CAGGG--------TCTACACT---GTTCCCTC-----CCctcccg---------------ctttctgtagatgaagaaacagatttctatatgggaagcaaggcgaaatga-------tttacttaaggtcacattgctaaatagg-aatcagattggagttagac-tttaattctccaga-ctactgatccaagtcccttttcaatgTGTGTGAGCCGCTCGAAAGGTGCATTTGC--ATTTT--AAAAGAGGAGAATGGTAACCCAAGCAAAAGTCTAAATGGTGTGACCCAGGCTCGGTGCCCAGTTC-CTGAAGGAAGGCACTTAGCCTCCTCCCTCTTTTTCTCCTCTTCGGCCATCC-CCTGCTGTTGCCATGTTGTGCTTTTCCCCTTCAGGGATATCTCACATTCGTTATTCTGATTAATCACCCTCAC-AGATTCGACTGGAAGGGAGGGGGAGGTTGGAGGGAAGGAAGAGGGAGAAAGAGGGTTGGTTGGTGAGTGAG-TTAGGTGGAGGGGGAAGCTTCCCTGGCTTGTGCCTTTCAAATGGACTCTGGGTTTTCCTTCTGGTAGTGCA-TAG-CTGTTCCTTTACAGGCGCTTAGGCGTGGCTCTAGGAAAGGTTTTATGAGTCCTGGGCTGATGTAAATGTTGACCAAACACCC s panTro4.chr2B 153182862 1815 + 247518478 ggcttgtctggaggttacgtggatagggagaggTTGGTGCCCTCTGACTGACCTGG--------------------CTGGAGA------AGCTCAGGCT----------GGGCTGTAAAAGGTCAAGGGAACACTTTTTATTTAGTTGGTGGGCTAATTGGCTTCTAGGGCCAACTTGGTTTGATAACAGA-TCT-TGGGTTTTGTTATCCCAATAAAGCAAGGCCGGGTCCTGGGGGCAAAACAGCCAGAAATGCCCCCAGTTTTGGGATCTGACATCTGAGGGACACAGGGAAGGAGGTAGGTCCAGATCCAGGGCTTGTCACAGAGTGGGCTGAGTGCCAACGAGTAGATG-ACATGTTTCTCTTGGCCTGGGATGCAGAAGGCGCTGGAGCAGCAGATGGAGAGCCACCGGGAAGCTCACCAGAAGCAGCTGTCCAGACTCCGAGACGAAATTGAGGAGAAGCAGAAAATCATTGATGAGATTCGGGAGTGAGTCGGCCCAGGGCAC-------CAGGG-----GCGTGGGGGTGGTCATGCCTCGGTCCTCTTGGGGAAGCCCGGAAGGATGTGGCTCTTAGTCGAGGGCCCTGCTCACCTTGCCCTGTGGGCACTGC------CCTGGTGACACAGCAGGCTGGGCGGGCTGCTTCCAAGGTCTGTTCTCCGATCTGGAGCTGAGC----------CTCCTGGAGCCCTGGCATGGCAGGTGGCAGGCGGGCCCAGCTGCCTCTCC----TAGT-CCCCGAG----GGCCAGGGTCACATAGGTGATTCCACTGGATGGACGCATGCCCCAGTAGAT-GGGGGGGAGCATCTGTAATGAAAGCACC---Aaaaaaaaaagaaaa--gaaaagaaaagaaaag-aaaagaaaaAATTTGGTCCTGACTACAGGATTCTAGTAGGTTAATAAACACT-------------------CGAGAGAAGAC-----AGCACCACTGCCTCC--CCTTCTCCCCCTACACATACACGCTCACTGGGCAA-CC-C--AGCCACCTGGTTCCATGTGCTCACTTCTTAGGGTCCCACACTGTCATGTGTCTGCTCAGGTAGAGGTGCCAGTG-ACCTGTGGCACTGCCACCAGGATGGCATCATTGCAGTTTCTCTC--------AGGTGACACCCCCTCAT-GTTGTGCTCCTGCCTTGTC--GCAGCCTCTGACATGCCCTC-------------------------------------------------------------------------------------------------------------------------------TGCTCCTt--------------------------------------cagaataatgttttcaaatgctctgcat-aaaagacctgggattacaaagaaaaccaattatattgaaatgcTGACCTCCCCAC------CCCCACCCCACC--CAGGG--------TCTACACT---GTTCCCTC-----CCctcccg---------------ctttctgtagatgaagaaacagatttctatatgggaagcaaggcgaaatga-------tttactttaggtcacattgctaaatagg-aatcagattggagttagac-tttaattctccaga-ctactgatccAAGTCCCTTTTCAATGTGTGTGAGCTGCTCGAAAGGTGCATTTGC--ATTTT--AAAAGAGGAGAATGGTAACCCAAGCAAAAGTCTAAATGGTGTGACCCAGGCTCGGTGCCCAGTTC-CTGAAGGAAGGCACTTAGCCTCCTCCCTCTTTTTCTCCTCTCCGGCTGTCC-CCTGCTGTTGCCATGTTGTGCTTTTCCCCTTCAGGGATATCTCATGTTCGTTATTCTGATTAATCACCCTCAC-AGATTCACCTGGAAGGGAGGGGGAGGTGGGAGGGAAGGAAGA-CGAGAAAGAGGGTTGGTTGGTGAGTGAGTTTAGGTGGA-GGGGAAGCTTCCCTGGCCTGTGCCTTTCAAATGGACTCTGGGTTTTCCTTCTGGTAGTGCA-TAG-CTGTTCCTTTACAGGCGCTTAGGCGTGGCTCTAGGAAAGGTTTTATGAGTCCTGGGCTGATGTAAATGTTGACCAAACACCC i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38389407 1817 + 135000294 ggcttgtct-gaggttacgtggatagggagaggTTGGTGCCCTCTGACTGACCTGG--------------------CTGGAGA------AGCTCAGGCT----------GGGCTGTAGAAGGTCAAGGGAACACTTTTTATTTAGTTGGTGGATTAATTGGCTTCTAGGGCCAACTTGGTTTTATAACAGA-TCT-TGGATTTTGTTATCCCAATAAAGCAAGGCTGGGTCCTGGGGGCAAAAGAGCCAGAAATACCCCCAGTTTTGGGATCTGACATCTGAGGGACACTGGGAAGGAGGTAGGTCCAGATCCAGGGCTTGTCACAGAGTGGGCTGAGTGCCAACGAGTAGATG-ACATGTTTCTCTTGGCCTGGGATGCAGAAGGCTCTGGAGCAGCAGATGGAGAGCCACCGGGAAGCTCACCAGAAGCAGCTGTCCAGACTCCGAGACGAAATTGAGGAGAAGCAGAAAATCATTGATGAGATTCGGGAGTGAGTTGGCCCAGGGCTC-------CAGGG-----GCGTGGGGGTGGTCATGCCTCTGTCCTCTTGGGGAAGCCCGGAAGGATGTGGCTCTTAGCCGAGGGCCCTGCTCACCTTGCCCTGTGGGC------------------ACACAGCAGGCTGGACGGGCTGCTTCCAATGTCTGTTCTCTGATCTGGAGCTGAGC----------CTCCTGGAGCCCTGGCATGGCAGGTGGCAGGCGGGCCCAGCTGCCTCTCC----TAGT-CCCCGAG----GGCCAGGGTCACATAGGTGATTCCGCTGGATGGATGCATGCCCCAGTAGAT-GGGGGGGAGCATCTGTAATGAAAGCACC-----aaaaaaaaaaaaa--aaaaagaaaaagaaaa-aagaaaaaaaaaTTGGTCCTGACTACAGAGTTCTAGTAGGTTAATAAACACTACTAGTAGGTTAATAAACACTAGAGAAGAC-----AGCACCACTGCCT-C--CCTTCTCCCTCTACACATACACGCTCACTGGGCAA-CC-C--AGCTACCTGGTTCCATGTGCTCACTTCTTAGGGCCCCACACTGTCGTGTGTCTGCGCAGGTAGAGGTGCCAGTG-ACCTGTGGCACTGCCACCAGGATGGCATCATTGCAGTTTCTCTC--------AGGTGACACCCCCTCAT-GCTGTGCTGCTGCCTTGTC--GCAGCCTCTGACATGCCCTC-------------------------------------------------------------------------------------------------------------------------------TGCTCCTt--------------------------------------cagaataatgttttcaaatgctctgcat-aaaagacctgggattacaaagaaaaccaattatattgaaatgcTGACCTCCTCAC------CCCCACCCCACC--CAGGG--------TCTACACT---GTTCCCTC-----Ccctcctg---------------ctttctgtagatgaagaaacagatttctatatgggaagcaagacgaaatga-------tttagttaaggtcacattgctaaatagg-aatcagattggagttagac-tttaattctccaga-ctactgatccAAGTCCCTTTTCAATGTGTGTGAGCTGCTTGAAAGGTGCATTTGC--ATTTT--AAAAGAGGAGAATGGTAACCCAAGCAAAAGTCTAAATGGTGTGACCCAGGCTCGGTGCCCAGTTC-CTGAAGGAAGGCACTTAGCCTCCTCCCTCTTTTTCTCCTCCCGGGCCACCC-CCTGCTGTTGCCATGTTGTGCTTTTCCCCTTCAGGGATATCTCACGTTCGTTATTCTGATTAATCACCCTCAC-AGATTCACCTGGAAgggagggggaggtgggagggaaggaaga-cgagaaagagggtgggttggtgagtgag-ttaggagga-ggggaagCTTCCCTGGCCTGTGCCTTTCAAGTGGACTCTGGGTTTTCCTTCTGGTAGTGCA-TAG-CTGTTCCTTTACAGGCGCTTAGGCGTGGCTCTAGGAAAGGTTTTATGAGTCCTGGGCTGATGTAAATGTTGACCAAACACCC i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82342194 1815 - 85365473 ggcttgtcg-gaggttacGTGGATCGGGAGAGGTTGGTGCCCTCTGACTGACCTGG--------------------CTGGAGA------AACTCAGGCT----------GGGCTGTAGAAGGTCAAGGGAACACTTTTTATTTAGTTGGTGGACTAATTGGCTTCTAGGGCCCACTTGGTTTTATAACAGA-TCT-TGGGTTTTGTTATCCCAATAAAGCAAGGCCGGGTCCTGGGGGCA------CCAGAAATGCCCCCAGTTTTGGGATCTGACATCTGAGGGACACGGGGAAGGAGGTAGGTCCAGATCCAGGGCTTGTCACAGAGTGGGCTGAGTGCCAACGAGTAGATG-ACATGTTTCTCTTGGCCTGGGATGCAGAAGGCACTGGAGCAGCAGATGGAGAGCCACCGGGAAGCTCACCAGAAGCAGCTGTCCAGACTCCGAGACGAAATTGAGGAGAAGCAGAAAATCATTGATGAGATTCGGGAGTGAGTTGGCCCAGGGTTC-------CAGGG-----GCGTGGGGGTGGTCATGCCTCGGTCCTCTTGGGGAAGCCCGGAAGGGTGTGGCTCTTAGCCGAGGGCCCTGCTCGCCTTGCCCTGTGGGCACTGC------CCTGGTGACACAGCAGGCTGGGCGGGCTGCTTCCAAGGTCTGTTCTCCGATCTGGAGCTGAGC----------CTCCTGGAGCCCTGGTGTGGCAGGTGGCAGGCGGGCCCAGCTGCTTTTCC----TAGT-CCCCGAG----GGCCAGGGTCACATAGGTGATTCCGCTGGATGGACGCATGCCCCAGTAGATGGGGGGGGAGCATCTGTAATGAAAGCACCaaaaaaaaaaaaaaaaag--aaaaaagaaaagaaaa-aagattaaaaaaTTGGTCCTGATTACAGGGTTCTAGTAGGTTAATAAACACT-------------------CCAGAGAAAAC-----AGCACCACTGCCTCC--CCTTCTCCCCCTACACATATACGCTCACTGGGCAA-CC-C--AGCCACCTGGTTCCATGTGCTCACTTCTTAGGGCCCCACACTGTCACGTGTCTGCGCAGGCAGAGGTACCAGTG-ACCTGTGGCACTGCCACCAGGATGGCATCATTGCAGTTTCTCTC--------AGGTGACACCCCCTCAT-GCTGTGCTCCTGCCTTGTC--GCAGCCTCTGACATGCCCTC-------------------------------------------------------------------------------------------------------------------------------TGCTCCTt--------------------------------------cagaataatgttttcaaatgctctgcat-aaaagacctgggattacaaagaaaaccaattatattgaaatgcTGAcctccccacc-cccaccccaccccacc--cAGGG--------TCTACACT---GTTCCTTC-----CCCTACCG---------------CTttctgtagatgaagaaacagatttccatatgggaagcaaggcgaaatga-------tttacttaaggtcacattgctaaatagg-aatcagattggagttagac-tttaattctccagacctactgatccaagtctctttTCAATGTGTGTGAGCTGCTCAAAAGGTGCATTTGCATATTTT--AAAAGAGGAGAATGGCAACCCAAGCAAAAGTCTAAATGGTGTGACCCAGGCTCAGTGCCCAGTTC-CTGAAGGAAGGCACTTAGCCTCCTCCCTCTTTTTCTCCTCCCTGGCCACCC-CCTGCTGTTGCCATGTTGTGCTTTTCCCCTTCAGGGATATCTTACGTTGGTTATTCTGATTAATCACCCTCAC-AGATTCACCTGGAAGGGAGGGGGAGGTGGGAGGGAAGGAAGA-CGAGAAAGAGGGCAGGTTGGTGGG-----TTAGGAGGA-GGGGAAGCTTCCTTGGCCTGTGCCTTTCAAATGGCCTCTGGGTTTTCCTTCTGGTAGTGTA-TAG-CTGTTCCTTTACAGGCGCTTAGGCGTGGCTCTAGGAAAGCTTTTATGAGTCCTGGGCTGATGTAAATGTTGACCAAACACCC i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11953645 1814 + 106825570 ggtttgtct-gaggttacTTGAATAGGGAGAGGTTGGTGCCCTCTGACTGACCTGGCTGGAGAAGCTCAGGGTGGACTGGAGA------AGCTCAGGCT----------GGGCTATAGAAGGTCAAGGGAACACT-----TTTAGTTGGTGGACTAATTGGCTCCTAAGGCCCACTTGGTTTTATAACAGA-TCT-TGGGTTTTGTTA-CCCAATAAAGCAAGGCCGGGTCCTGGGCGCACAAGAGTCAGAAATGCCCCCAGTTTTGGGATCTGACATCTGAGGGACACAGGGGAGGAGGCAGGTCCAGATCCAGGGCTTGTCACAGAGTGGGCTGAGTGCCAACGAGTGGATG-ACATGTTTCTCTTGGCCTGGGATGCAGAAGGCGCTGGAGCAGCAGATGGAGAGCCACCGGGAAGCTCACCAGAAGCAGCTGTCTAGACTCCGAGATGAAATTGAGGAGAAGCAGAAAATCATTGATGAGATTCGGGAGTGAGTTGGCCCAGGACTC-------CAGGG-----GTGTGGGGGTGGTCATGCCTCGGTCCTCTTGGGGAAGCCCGGAAGGATGTGGCTCTTAGCCAAGCGCCCTGCTCACCTTGCCCTGTGGGCACTGC------CCTGGTGACACAGCAGGCTGGGCGGGCTGCTTCCAAGGTCTGTTCTCCCATCTGGAGCTGAGC----------CTCCTGGAACCCTGGCGTGGCAGGTGGCAGGCGGGCCCAGCTGCCTTTCC----CAGT-CCCCAAG----GGCCAGGGTCACATAGGTGATTCCG-TGGATGGACACATGCCCCAGTAGAT--GGGGGGAGCATCTGTAATGAAAGCACC-----aaagaaaag-------aaaaaaaaaagaaaa-aagaaaaaaTACTTGGTCCTGACTGCACAGTTCTAGTAGGTTAATAAACACT-------------------CGAGAGAAGAC-----AGCACCACTGCCTCC--CCTTCTCCCCCTACACATACACACTCACTGTGCCA-CC-C--AGCCACCTGGTTCCATGTGCTCACTTCTTAGGACCCCACACTGTCATGTGTCTGCACAGGCAGAGGTGCCAGCG-ACCTGTGGCACTGCCACCAGGATGGCATCATTGCAGTTTCTCTC--------TGGTGACACCCCCTCAT-GCTGTGCTCCTGCCTTGTC--ACAGCCTCTGATATGCCCTC-------------------------------------------------------------------------------------------------------------------------------TGCTCCTt--------------------------------------cagaatgatgttttcaaatgctctgcat-aaaagacttgggattacaaagaaaaccaattatattgaaatgcTGATCtccccac------ccccaccccacc--cgggg--------tctacact---gttctctt-----ccctccca---------------ctttctgtagatgaagaaacagatttctatatgggaagcaaggtgaaatga-------tttacttaaggtcacattgctaaatagg-aatcagattggagttagac-tttaattctccaga-ctactgatccaagtccctttTCAATGTGTGTGAGCCGCTTGAAAGGTACATTTGC--ATTTT--AAAAGAGAAGAATGGTAACCCAGGCAAAAGTCTAAATGGTGTGACCCAGACTCGGTGCCCAGTCC-CTGAAGGAAGGCACTTAGACTCCTCCCTCTTTTTCTCCTCCCGGGCCACCC-CCTGCTGTTGCCATGTG----CTTTCCCTTTCAGGGATATCTCACGTTTATTATTCTGATTAATCACCCTCAC-ATATTCACCTggaagggagggggaggtgggagggaaggaagg-tgagaaagagggcgggTTGGTGAGTGAG-TTAGGAGGT-GGGGAAGCTTCCTCGGTCTGTGCCCTTCAAATGGACTCTGGGCTTTCCTTCTGGTGGTGCA-TAG-CTGTTCCTTTACAGGCGCTTAGGCGTGGCTCTAGGAAAGGTTTTATGAGTCCTAGGCTGATGTAAATGTTGACCAAACACCC i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37657288 1814 + 132586672 ggtttgtct-gaggttacTTGAATAGGGAGAGGTTGGTGCCCTCTGACTGACCTGGCTGGAGAAGCTCAGGGTGGACTGGAGA------AGCTCAGGCT----------GGGCTGTAGAAGGTCAAGGGAACACT-----TTTAGTTGGTGGACTAATTGGCTCCTAAGGCCCACTTGGTTTTATAACAGA-TCT-TGGGTTTTGTTA-CCCAATAAAGCAAGGCCGGGTCCTGGGCGCACAAGAGTCAGAAATGCCCCCAGTTTTGGGATCTGACATCTGAGGGACACAGGGGAGGAGGCAGGTCCAGATCCAGGGCTTGTCACAGAGTGGGCTGAGTGCCAACGAGTGGATG-ACATGTTTCTCTTGGCCTGGGATGCAGAAGGCGCTGGAGCAGCAGATGGAGAGCCACCGGGAAGCTCACCAGAAGCAGCTGTCTAGACTCCGAGATGAAATTGAGGAGAAGCAGAAAATCATTGATGAGATTCGGGAGTGAGTTGGCCCAGGACTC-------CAGGG-----GTGTGGGGGTGGTCATGCCTCGGTCCTCTTGGGGAAGCCCGGAAGGATGTGGCTCTTAGCCAAGCGCCCTGCTCACCTTGCCCTGTGGGCACTGC------CCTGGTGACACAGCAGGCTGGGCGGGCTGCTTCCAAGGTCTGTTCTCCCATCTGGAGCTGAGC----------CTCCTGGAACCCTGGCGTGGCAGGTGGCAGGCGGGCCCAGCTGCCTTTCC----CAGT-CCCCGAG----GGCCGGGGTCACATAGGTGATTCCG-TGGATGGACACATGCCCCAGTAGAT--GGGGGGAGCATCTGTAATGAAAGCACC-----aaagaaaag-------aaaaaaaaaagaaaa-aagaaaaaaaaCTTGGTCCTGACTGCACAGTTCTAGTAGGTTAATAAACACT-------------------CGAGAGAAGAC-----AGCACCACTGCCTCC--CTTTCTCCCCCTACACATACACACTCACTGTGCCA-CC-C--AGCCACCTGGTTCCATGTGCTCACTTCTTAGGACCCCACACTGTCATGTGTCTGCACAGGCAGAGGTGCCAGCG-ACCTGTGGCACTGCCACCAGGATGGCATCATTGCAGTTTCTCTC--------TGGTGACACCCCCTCAT-GCTGTGCTCCTGCCTTGTC--ACAGCCTCTGACATGCCCTC-------------------------------------------------------------------------------------------------------------------------------TGCTCCTt--------------------------------------cagaatgatgttttcaaatgctctgcat-aaaagacttgggattacaaagaaaaccaattatattgaaatgcTGATCTCCCCAC------CCCCACCCCACC--CGGGG--------TCTACACT---GTTCTCTT-----CCctccca---------------ctttctgtagatgaagaaacagatttctatatgggaagcaaggtgaaatga-------tttacttaaggtcacattgctaaatagg-aatcagattggagttagac-tttaattctccaga-ctactgatccAAGTCCCTTTTCAATGTGTGTGAGCCGCTTGAAAGGTACATTTGC--ATTTT--AAAAGAGAAGAATGGTAACCCAAGCAAAAGTCTAAATGGTGTGACCCAGACTCGGTGCCCAGTCC-CTGAAGGAAGGCACTTAGACTCCTCCCTCTTTTTCTCCTCCCGGGCCACCC-CCTGCTGTTGCCATGTG----CTTTCCCTTTCAGGGATATCTCACGTTTATTATTCTGATTAATCACCCTCAC-ATATTCACCTggaagggagggggaggtgggagggaaggaagg-tgagaaagagggcgggttggtgagtgag-ttaggaggt-ggggaAGCTTCCTCGGTCTGTGCCCTTCAAATGGACTCTGGGCTTTCCTTCTGGTGGTGCA-TAG-CTGTTCCTTTACAGGCGCTTAGGCGTGGCTCTAGGAAAGGTTTTATGAGTCCTAGGCTGATGTAAATGTTGACCAAACACCC i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11314491 1802 + 104110932 GGTTTGTCT-GAGGTTACTTGAATAGGGAGAGGTTGGTGCCCTCTGACTGACCTGGCTGGAGAAGCTCAGGGTGGACTGGAGA------AGCTCAGGCT----------GGGCTGTAGAAGGTCAAGGGAACACT-----TTTAGTTGGTGGACTAATTGGCTCCCAAGGCCCACTTGGTTTTATAACAGA-TCT-TGGGTTTTGTTA-CCCAATAAAGCAAGGCCGGGTCCTGGGCGCACAAGAGTCAGAAATGCCCCTAGTTTTGGGATCTGACATCTGAGGGACACAGGGGAGGAGGTAGGTCCAGATCCAGGGCTTGTCACAGAGTGGGCTGAGTGCCAACGAGTGGATG-ACATGTTTCTCTTGGCCTGGGATGCAGAAGGCGCTGGAGCAGCAGATGGAGAGCCACCGGGAAGCTCACCAGAAGCAGCTGTCTAGACTCCGAGATGAAATTGAGGAGAAGCAGAAAATCATTGACGAGATTCGGGAGTGAGTTGGCCCAGGACTC-------CAGGG-----GTGTGGGGGTGGTCATGCCTCGGTCCTCTTGGGGAAGCCCGGAAGGATGTGGCTCTCAGCCAAGGGCCCTGCTCTCCTTGCCCTGTGGGCACTGC------CCTGGTGACACAGCAGGCTGGGCGGGCTGCTTCCAAGGTCTGTTCTCCCATCTGGAGCTAAGC----------GTCCTGGAACCCTGGCGTGGCAGGTGGCAGGCGGGCCCAGCTGCCTTTCC----CAGT-CCCCGAG----GGCTGGGGTCACATAGGTGATTCCG-TGGATGGACGCATGCCGCAGTAGAT---GGGGGAGCATCTGTAATGAAAgcacc-----aaag------------------aaaagaaaa-aagaaaaaaaacttggtCCTGACTGCACGGTTCTAGTAGGTTAATAAACACT-------------------TGAGAGAAGAC-----AGCACCACTGCCTCC--CCTtctccccctacacacacacactcactgtgCCA-CC-C--AGCCACCTGGTTCCATGTGCTCACTTCTTAGGACCCCACACTGTCATGTGTCTGCACAGGCAGAGGTGCCAGCG-ACCTGTGGCACTGCCACCAGGATGGCATCATTGCAGTTTCTCTC--------TGGTGACACCCCCTCAT-GCTGTGCTCCTGCCTTGTC--ACAGCCTCTGACATGCCCTC-------------------------------------------------------------------------------------------------------------------------------TGCTCCTT--------------------------------------CAGAATGATGTTTTCAAATGCTCTGCAT-AAAAGACTTGGGATTACAAAGAAAACCAATTATATTGAAATGCtgatctccccac------ccccaccccacc--caggg--------tCTTCACT---GTTCTCTT-----CCCTCCCA---------------CTTtctgtagatgaagaaacagatttcTATATGGGAAGCAAGGTGAAATGA-------TTTACTTAAGGTCACATTGCTAAATAGG-AATCAGATTGGAGTTAGAC-TTTAATTCTCCAGA-CTACTGATCCAAGTCCCTTTTCAATGTGTGTGAGCCGCTTGAAAggtacatttgc--atttt--aaaagagaagaatgGTAACCCAAGCAAAAGTCTAAACGGTGTGACCCAGACTCGGTGCCCAGACC-CTGAAGGAAGGCACTTAGactcctccctctttttctcctcccGGGCCACCC-CCTGCTGTTGCCATGTG----CTTTCCCTTTCAGGGATATCTCACGTTTATTATTCTGATTAATCACCCTCAC-TTATTCACCTggaagggagggggaggtgggagggaaggaagg-cgAGAAAGAGGGCGGGTTGGTGAGTGAG-TTAGGAGGT-GGGGAAGCTTCCTCGGTCTGTGCCCTTCAAATGGACTCTGGGCTTTCCTTCTGGTGGTGCA-TAG-CTGTTCCTTTACAGGCGCTTAGGCGTGGCTCTAGGAAAGGTTTTATGAGTCCTAGGCTGATGTAAATGTTGACCAAACACCC i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34414531 1820 + 128595539 ggtttgtct-gaggttacTTGAATAGGGAGAGGTTGGTGCCCTCTGACTGACCTGGCTGAAGAAGCTCAGGGTGGACTGGAGA------AGCTCAGGCT----------GGGCTGTAGAAGGTCAAGGGAACACT-----TTTAGTTGGTGGACTAATTGGCTCCTAAGGCCCACTTGGTTTTATAACAGA-TCT-TGGGTTTTGTTA-CCCAATAAAGCAAGGCCGGGTCCTGGCCACACAAGAGTCAGAAATGCCCCCAGTTTTGGGATCTGACATCTGAGGGACACAGGGGAGGAGGTAGGTCCAGATCCAGGGCTTGTCACAGAGTGGGCTGAGTGCCAACGAGTGGATG-ACATGTTTCTCTTGGCCTGGGATGCAGAAGGCGCTGGAGCAGCAGATGGAGAGCCACCGGGAAGCTCACCAGAAGCAGCTGTCTAGACTCCGAGATGAAATTGAGGAGAAGCAGAAAATCATTGATGAGATTCGGGAGTGAGTTGGCCCAGGACTC-------CAGGG-----GTGTGGGGGTGGTCATGCCTCGGTCCTCTTGGGGAAGCCCGGAAGGATGTGGCTCTTAGCCAAGCGCCCTGCTCACCTTGCCCTATGGGCACTGC------CCTGGTGACACAGCAGGCTGGGCGGGCTGCTTCCAAGGTCTGTTCTCCCATCTGGAGCTGAGC----------CTCCTGGAACCCTGGCGTGGCAGGTGGCAGGCGGGCCCAGCTGCCTTTCC----TAGT-CCCCGAGGGCCGGCCGGGGTCACATAGGTGATTCCG-TGGATGGATGCATGCCGCAGTAGAT--GGGGGAAGCATCTGTAATGAAAGCACC-----aaagaaaaga------aaaaaaaaaagaaaa-aagaaaaaaaaCTTGGTCCTGACTGCACGGTTCTAGTAGGTTAATAAACACT-------------------CGAGAGAAGAC-----AGCACCACTGCCTCC--CCTTCTCCCCCTACATATACACACTCCCTGTGCCA-CC-C--AGCCACCTAGTTCCATGTGCTCACTTCTTAGGACCCCACACTGTCATGTGTCTGCACAGGCAGAGGTGCCAGCG-ACCTGTGGCACTGCCACCAGGATGGCGTCATTGCAGTTTCTCTC--------TGGTGACACCCCCTCAT-GCTGTGCTCCTGCCTTGTC--ACAGCCTCTGACATGCCCTC-------------------------------------------------------------------------------------------------------------------------------TGCTCCTt--------------------------------------cagaataatgttttcaaatgctctgcat-aaaagacttgggattacaaagaaaaccaattatattgaaatgcTGATCTCCCCAC------CCCCACCCCACC--CAGGG--------TCTTCACT---GTTCTCTT-----CCctccca---------------ctttctgtagatgaagaaacagatttctatatgggaagcaaggtgaaatga-------tttacttaaggtcacattgctaaatagg-aatcagattggagttagac-tttaattctccaga-ctactgatccAAGTCCCTTTTCAATGTGTGTGAGCCGCTTGAAAGGTATATTTGC--ATTTT--AAAAGAGAAGAATGGTAACCCAAGCAAAAGTCTAAATGGTGTGACCCAGACTCGGTGCCCAGTCC-CTGAAGGAAGGCACTTAGACTCCTCCCTCTTTTTCTCCTCCCGGGCCACCC-CCTGCTGTTGCCATGTG----CTTTCCCTTTCAGGGATATCTCACGTTTATTATTCTGATTAATCACCCTCAC-CTATTCACCTggaagggagggggaggtgggagggaaggaagg-cgagaaagagggcgggttggtgagtgag-ttaggaggt-ggggaAGCTTCCTCGGCCTGTGCCCTTCAAATGGACTCTGGGCTTTCCTTCTGGTGGTGCATTAG-CTGTTCCTTTACAGGCGCTTAGGCGTGGCTCTAGGAAAGGTTTTATGAGTCCTAGACTGATGTAAATGTTGACCAAACACCC i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87898439 1761 - 158406734 ggcttgtct-gaggttacTTGGATAGGGAGAGGTTGGTGGTGTCTGACTGTCCTTC--------------------CTGGAGA------AGCTCAGGGT----------GGGCTGCAGAAGGTCAAGGGAATGTTTTTTGTTTAGTTAGTGGACTAATTGGCTCCTAGGACCCACTTGGTTTTATAACCGA-TCT-TGGGTTTTGTTGTCCCAATAAAGCAAGGCTGGGTCCTGGGAGCACAAGAGCCAGGATTGCCCCCAGTTTTGGGATCTGACCTCTGCGGGACACAGGGTAGGAGGTAGATGTGGATCCAGG--------TAGAGTGGGCTGAGTGCCAGTGAGTGGATGAACATG-TTCTCTTGGCCTGGGCTGCAGAAGGCGCTGGAGCAGCAGATGGAGAGCCACCGGGAAGCGCACCAGAAGCAGCTGTCCAGACTCCGAGACGAAATTGAGGAGAAGCAGAAAATCATTGATGAAATTCGGGAGTGAGTTGGCCCAGGGCTC-------CAGGG-----GCAT-GGGGTGGTCATGCCTTGGTCCTCTTAGGGCATCCTGGAAGGACGTGGCTCTTAGCCAAGGGTCCTACTCACCTTGCCCCATGGGCACTGC------CCTGGTGACACAGCAGGCTGGGCGTGCTGCTTCCAAGGTCTGTTCTCCCATCTGGAGCCGAG---------------------CCTGGCATGGCAGGTGGAAGGCAGGCCCAGCTGCCTTTCC----TAGT-CCCCGAG----GGCCAGGGTCACTTAGGTAACTCCGCTGGATGGATGCATGCC-CAGTAGAT--GTGAGGAGTATCTGTAATGAAAGCACc-----aaaacaaaacaaaacaaaacaaaacaaaaca-aaacaaaacaaaCTGGTCCTGACTCCAGGGTTCTGGTAGGTTAATAAACACT-------------------CCTGAGAAGGCAGTCAAGTACCACTGCCTCC--CCTTCTCCC-CTACACATACACGCTCACTGCACCACCC-C--AGCCACCTGGTTCAATGTGCCCACTTCTTAG----------------GTGTCTGTGCAGGTGGAGGTACCAGCA-ACCTGTGGCGCTGCCACCAGGATGGCATCATTGCAGTTTGTCTCTAGTGACGTAGTGACACCCCCTCAT-GCTGTGCTGCTGCCTTgtctggtggcctctgacatgccctc-------------------------------------------------------------------------------------------------------------------------------tgctcctt--------------------------------------cagaataatgtttttgagtgctctgaat-aaaagacccgggattacaaagaaaaccaattatattgaaatgcTGACCTCCCCAC------CCCCACCCCACC--CAAGG--------TCTGCACT---GTTCCCTC-----CCCTCTTG---------------CTCTCTGTAGATGAAGAAAC--ATTTCTATATAGGAagcaaagtgaaatga-------tttacgtaaggtcacattgctaaataggaaatcggattggagttagac-tttaattctccaga-ctactgatccAAGTCCCTTTTCAATGTGTGTGAGCTGCTGGAAAGGAGCATTTGC--ATTTT--AAAAGAGGAGATTGGTAACCCAAGCAAAAGTCTAAATGGTGTGACCCAGGCTGAGTGCCCAGTCC-CAGAAGGAAGGCACTTAGCCTCCTCCCTCCGTTTCTCCTCCCAGGCCACCCACCTGCTGTTGCCAAGTTATG-CTTTCCCATTCAGGGATGCCTCATGTTCATTTTTCTGATTAATGACCCTCAC-GTATTCACCTGGAAGGGAGGG---------------GGAAGA-T-------------GGTTGGTGAGTGAG-TTAGGAGGT-AGGGGAGCTTCCCAGGCCTGTAGCTTTCAAATGGACTCTGGGCTTTCCTTCCGGTAGTGCA-TAA-CTGTTCCTTTACAGGCGCTTAGTTGAGGCTCTAGGAAAGGTGGTATGAGTCCTGGGCTGATATAAAGGTTGACCAAACACCC i calJac3.chr6 C 0 C 0 s mm10.chr2 49741601 1851 + 182113224 gacttgtct-ggagtcacccaggtagcaagaaagctgtg--atctgactggcctga--------------------ctgGGAA------AACCACGGGTCTCAGATGAGAGGGGGTAGAAGGGCAAAGGCAGACTTTCTGTGCA-TCGTTGGGCTGGTTTGCCTCTGGGGCCCACTCAGTTTTGTGACAGATTCA-CGGGTTTTGCTGTACAAATGAAGCAAGGCCGGGGGCTTGG-GCACACGAGCCAGAATCGCCCTTAATTTTGGGGTTTAACATCTGAG------------GGAGATAGATAGGGATCCAGGGCTTGTCACTGAGGGGGCAGAGCGCCGACTACTTGACG-CCACATTTCTCCTGGCCTGGCTTGCAGAAAGCTCTGGAGCAGCAGATGGAGAGCCACCGGGAAGCGCACCAAAAGCAGCTGTCCAGACTTCGCGATGAGATTGAGGAGAAGCAGAGAATCATTGATGAGATCCGGGAGTGAGTTGGCTGGGGGGCT-------CATGGGATACGGGCGGGCACGGGCAAGCCTTGG-------GTGGCAGACTTAAAGGACATGGCTTTTGGCCAGGGCCCCTCGTCTCTGTGCT---TGGACTCT-----------------------------GTGTGCTGCCTCTGAGGTCTGTTCTCCCATCTGGAGCCCAGCCCCACCCCCGCCCCCAATGCTCTGGTACAGCAGGTGGCATGCAAAGCCAGCTGCCCCTTCATATCAAT-CC---------AGCCAG---TTCAGGGGTGACTCAGCTTGGAAGATACACACC-CAGGAGCT--GGAAAGACTA-----AATGAATGTATG-----AAGAAAAAAAAAA---AAAGCCCAAACAAAA-AAACCACAAGACT--ATTCCTCCTCCAGGA---------ATTAACAAACACT-------------------CCAGAGAAGCT-GTTTGGCTTTGTTGCCT-----CTTCAGCC-CAACAGAT----------TATGCAC-CTGT--AGCCACCTGGTCACCTGTGTGCACATCTCAAAGACCTGTGCCAGTATGAGTCTGTGCGTG-ATAGATGGCAATATACCCTTCCCGCTGCTATCAGGATGACATCATTGCAACTTAACTC--------TG--GATGCTGCCTTGT-GACCACATCCTGCCTTCTC--AGAGTCCTTGGGGAGCCCCCCTGCTCCACAGTA--CCCTTTCCTTTTC------------------------------TGTAGCA-CAAGTCCCCCGGT---TACAAAGCTTGCTTATGGGGGGGGATCTTATTCTggggttcattatgctctttacatagtagatcttcttggcagtctctgaacccctttgcagaacagcctttt-aaatgctcc-cct-aaaaagcatactactataaagaaaa-tatgtatactgaaatagaattTCACCCACTGCCCCTCCCTCCCCAAC--TAGGGCAAGACCCTCTCCATT---ACCCCTCCCACCACCCTCCCACCATCACCactgcttctttctatagatgaagaattag------atataggaagcaaggttgaatta-------tttacttaaggtcacacggctaaatagg-aatcagactggagctaagcgtttaattctccagg-ctactgatccAAAT--CTTTTCAGAGTATGTGAGCTGCTTGCAAGA-GCATTTGC--ATCTTGAAGAAGAGGAGGAGGG------AAGCAGGAGTCTAGCTGGTGTG---CTAGCTCTGTGCAGCCTGT-CTGAGGACAGGC-------CTCTGCCTGCTCTGTCCCCACCCCTTCTGCGC-CTTCCTATTCCAACA----------CCCCTTGAG---CTTCTCCTGGACACAATTCTGATTAATATTCCTCAAGACATTGTTCTGAAAGAGAAGGAAAGAGAGAAAGGGAGATAGC-GAGAACATAATATAAGTCAGTGCATGAG-TT---CCTT-GTGGGAGCTTTCTAGACT-------------TGGGCTCTTGGTGCTTC--------------TGG-CTTCCTTCACACAGTCTTGTGGTCTCAGCCTCTCGGAGGGCTTTATGAGCACTGGCGTGAGGCAGAAGTGGAATAGACCCTC i mm10.chr2 I 6 I 478 s canFam3.chr19 50655889 1827 + 53741614 GGCTTGCCT-GAGGTCACC------------------TGCCCTCTGACTGACCTGG--------------------CTGGAGGCCATGTAGCTCAGG-T----------GAGCCGTAGAAAGTCACAGGAAAGCTTTTCATTTAATGAACGGACTGATCTGCTCCTGGGGCCCTCTGGGTGTAATCACAGA-TTTGGGGGGTTTGTTGTGCCAGTAAAGCAACGC-GGGTCCTGGGGG------------------CCCCAGGTCGGGGATTTGACAGCCAAGGGACGTAGGGTAGGAGGTAGAAGCC-ATCCAGGGCCTGTCACAGTGTGGGCCGTGAGCCAACGAGTGGATG-ACACATTTCTCTTGGCCTGGCTTGCAGAAGGCGCTGGAGCAGCAGATGGAGAGCCACCGGGAAGCTCACCAGAAGCAGCTGTCCAGGCTTCGGGACGAAATCGAGGAGAAGCAGAAAATCATCGATGAGATTCGGGAGTGAGTCGGCCCAGAGCTCTCGGACACGGGG-----GCGTGGGTGTGG-------------CTCTTGGGCCGGCCGGGAAGGACGCGGCGTCGGGCCCAGGTCC--GCTCCCCGTGGCCCGTGGGCTTTGCGCTCTGCCCTGCGCTGCAGCGGGCTAGACATGCGGCTGCCGACGTCTGTTCTCCCGTCTGGAGCTGAGC----------CT-CGGGGGCTCTGGTGGGGCAGGTGGCAGGCGGGTGCAGCCGCCCGTCC----TGGTGCCCCCAG----GGCCAGGGTCATGTTGGTGTCTCAGTTGGGTACACACGTGCCCTTGTCGGT--GGAGGTACAGTCTGT-GTGAAACCATA-------------------------------TATAA-AAAACCCTTAGGTTGGTCCTGGCTC--AGGTCCTGACAGGCTAAT----ACT-------------------CCAGAGAAAG------ACCGTCAGCTCCTGCTGCCTCCTCACCCAGCCTATAAATGCTCCCTGCACAA-CC-CCGAGCC-CCTGGTCACGTGGGCACACTTCTTAGG----------GGCGTGTGTCTGTGCTCGTGG------------ACCCGTGGCATT--CGCCAGGACGGGGTCTTCGCAGCTTGTCCC--------AGGTGTCAGCCCCTCGGAGCCATTCTCCTGTCCTGGC--GTGGCCACTGAAGAACCCCT--GCCCCGTAATGATCCCTTCCCGCCTTCTATCGTACCATCCTGCCCCTCTGTCAGAATAAGCCAGCAAGCTGGAAAGTGCCTTCAGGGTCCTCTCCTTgaggtttcttacattttt----------tgcaccgt--------gactccctcggcagtctttgaacccctttgcagaataatgtttttcagtgccccagataaaaagatgagggaaagcaaaggaaaccagttctgttgaaatccagctCCAGCCCC------TGACACGCCACCCACAGGA--------TGTAGACTAAAGGCTCCCC-----CCGTcccc---------------ctttctgtagatgaggagccggacctctgcatgggaagcaaggcaaggtgaaatgaggtgaaattagggtcacaccgctaagtagg-aatcaaaccggagttcgag-tttaattctccagg-ctactgatccaaacctctcATCAGTGCGCGCAAGCCGCTCGCACAGCACGTTTGC--ATTTA--GAGAGAGGAGGATGGTAAG--AAGCAGAA-TGTAAACGCCGTGATCCGGCTCGTGCGCGCTGTCTACCTAAGGCAAGCCC---GTCTCGTCTTTCCCT-CCTCTTTTTGGACCGCCC-CGTGCTGTCCCTCAGCTTGGCCTTACCCCTTCACGCGTGTCCTGCGTTCTTTATTCTCATGAATCACCTTCCA--------------------------------------------CGCGAGGGAG----GGCTGGTGAATGAG-TCGGTAGGT-AGAGACGTTTCCTTGGCCTGGGCCGTTCAAACGCACTCAGGGTTCTCCTTCTGAGAGTGTA-GAGTCTGTTCCTTTACGGATGCCCGGGCATGGCCCTA-AAAGGGTTTTAGAAATTCCACG----TGCAAATGTTGACCAAGCGCCC i canFam3.chr19 C 0 C 0 a score=515011.000000 s hg38.chr2_GL582966v2_alt 71888 151 + 96131 TCAACCAGATGGCGAGTTTC---TGTTTGCAGCAGAGCCCAGGCTGTCTTTTCTTCATAA---TTCTCTCTGTGCCCACTCCTCGAGGGC----AGGAACTGTCCCTGTATCAGTGAGGCATTCGGACTTGGGAGATGTTTTTAGAACATCAGACCAGAAA s panTro4.chr2B 153184677 152 + 247518478 TCAACCAGATGGCGAGTTTC---TGTTTGCAGCAGAGCCCAGGCTGTCTTTTCTTCATAA--TTTCTCTCTGTGCCCACTCCTCGAGGGC----AGGAACTGTCCCTGTATCAGTGAGGCATTTGGACTTGGGGGATGTTTTTAGAACATCAGACCAGAAA i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38391224 154 + 135000294 TCAACCAGATGGCGAGTTTC---TGTTTGCAGCAGAGCCCAGGCTGTCTTTTCTTTATGATTTCTCTCTCTGTGCCCACTCCTCGAGGGC----AAGAACTGTCCCTGTATCAGTGAGGCATCTGGACTTGGGAGATGTTTTTAGAACATCAGACCAGAAA i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82344009 154 - 85365473 TCAACCAGATGGCAAGTTTC---TGTTTGCAGCAGAGCCCAGGCTGTCTTTTCTTCATAATTTCTCTCTCTGTGCCCACTCCTCGAGGGC----AGGAACTGTCCCTGTATCAGTGAGGCATTTGGACTGGGGAGATGTTTTTAGAACATCAGACCAGAAA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11955459 154 + 106825570 TCAACCAGATGGCAAGTTTC---TGTTTGCAGCAGAGCCCAGGCTGTCTTTTCTTCATAATTTCTCTCTCCGTGCCCACTCCTTGAGGGC----AGAAACTGCCCCGGTATCTGTGAGGCATTTGGACTTGGGAGATGTTTTTAGAACGTCAGACCAGAAA i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37659102 154 + 132586672 TCAACCAGATGGCAAGTTTC---TGTTTGCAGCAGAGCCCAGGCTGTCTTTTCTTCATAATTTCTCTCTCCGTGCCCACTCCTTGAGGGC----AGAAACTGCCCCGGTATCTGTGAGGCATTTGGACTTGGGAGATGTTTTTAGAACGTCAGACCAGAAA i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11316293 154 + 104110932 TCAACCAGATGGCAAGTTTC---TGTTTGCAGCAGAGCCCAGGCTgtcttttcttcataatttctCTCTCCGTGCCcactccttgagggc----agaaacTGCCCCGGTATCAGTGAGGCATTTGGACTTGGGAGATGTTTTTAGAACGTCAGACCAGAAA i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34416351 154 + 128595539 TCAACCAGATGGCAAGTTTC---TGTTTGCAGCAGAGCCCAGGCTGTCTTTTCTTCATAATTTCTCTCTCCGTGCCCACTCCTTGAGGGC----AGAAACTGCCCCGGTATCAGTGAGGCATTTGGACTTGGGAGATGTTTTTAGAACGTCAGAGCAGAAA i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87900200 154 - 158406734 TCAACCAGATGGAAAGTTTC---TGTCTGCAGCAGAGCCCAGGCTGTCTTCTCTTCCTAATTCCTCTTTCTGTACCGACTCCTCGAGGGC----AGGAACTGTGCCTGTGTCCGTGAGGCATTTGGACTTGGGAGATATTTTTAGAATATCATACCAGAAG i calJac3.chr6 C 0 C 0 s canFam3.chr19 50657716 156 + 53741614 CCAACCGGATGGCAGGTTTCTCTTGTGTGCAGCACACCCTGGGC-----TTTCTCTGTATTTCCTCTCTCCACACCCCCTCGTTGCAGACTTCACGCAGCGCTGCTTGTGTCAGCCAGGAATTTGGACTTAGGAGATGTTTTCAGATCATCGTACAAGAGA i canFam3.chr19 C 0 C 0 e mm10.chr2 49743452 478 + 182113224 I a score=6593412.000000 s hg38.chr2_GL582966v2_alt 72039 1785 + 96131 -TGAGGGAAGGTG-GAAATGGCCAAATCAGGTTCCCCAAGTGACTGCATGCCATCCGAGGGGCCGAGGAAGC-AGAGTTCTTCTGACATGGGCTCTCT-------------------------------------GTTTTAAAATATCAGCCCTTCTCCCATCTCATTATTTTTCCCCTGAAGCTCTTG--CACAAGCAAACTATAAATACATCCTCAAAGCC----TT-ATGTTTCATGACTCTTAGATGCACCCCAGAAATTAGTTTTCACTTGGGCACGGAGGAAGCTGTGAGGCTGTTCTGTGATCCCTCCAAATCCTGCAGAATTACTGCCTTTATTGTACAGAGCTAATAGGGTTGGAACAGAACCACGGTTTTAGCCTGATGACTCAGAATTTCAGACTGATGTGGAATATATTGC-TTTTTCCTCTCAATTTCAGTTTGAATCAGAAACTGCAACTGGAACAGGAGAAGCTTAGTTCTGATTATAACAAGCTGAAAATAGAGGACCAAGAGAGAGAAATGAAGCTGGAAAAGCTCTTGTGAGTGCACTCTAAATATTTCCT------CTATTTTCTCTCATCCCC--------------ATG-----------------------------ATATTCTGGTTAGA-TTGGGCTAATTTAAAAACAGACAATGGC-TATTTGTGTGCTTGT-----TGGTGGGTTTTG-TTGATTTATCTGTG-GATGCAAATAGTATCTGCTGAAATCTCTGAGTCCCCTG---TGGTGGTCTATGGTTCCTTTTTGTTT---TTCAGATTGCTCAACGATAAAAGGGAACAAGCCAGAGAAGACCTCAAAGGGCTGGAGGAGACAGTGGTATGTCAAGATATTTCCCGATTTATGTTTGTCTCCAAGACCGGATTCATTTGTGATTTGTCGGA----TTATTTCAAAATTTTATCCATGCACACCTTTCT---------------GTGTAATGT---------------------------------------------------------TTTAGATAAGACATTCTA-----TGG---------AAAAGTAGGATTTGTAGAATTTAGTCCTCAACTTTTCACA----------------GAATCAGTCAAC----CAATCCATCTATC--------------------------------------------CTTAGAGCAGTAA-CCTGGAGCCCCTGAGTGAGGATTAAGCTGAATTGCAACTTA------GCAATTTTACA-GCCCTGCACTTTGTGACATACTTCCACTCAAcattcaacagatatttattgagcatctcctaacggctggcattcttcaaggtgcttgaat--atatccataaacaacagagataagatccctgtcctcatgaagcttacctttagctgtggg---------agacgataaacagtaaggaaacaaatcttgcactctatcagattgctatagaatgtgcataggttggtgcctgggggaggctccatgaggatgtgacctttgagcagggactcgaagaaggagaagaactgag-cacagagatgtgttggg-gagagcattccaggcagaggcaacagctcatgccaaggccctgagataagcc---------cgggactgtcctgttgggggccagcagggaggtttgtgtggctgcagctgagggaaggaca------gggatataaggtgagcacagagaggtaaaggcttcagt-gattcaggccaggtaaaaccttgagacctgcagggctttggGTGGAGGAGTGATGGGCCCAACCTACCTTTGGAAGGGCTTGTTATTTGAAACCCTGGTTGGTTTTCTCTGTCGTGTGTCTGGGTTTGTTGGCATCATCTCCTCTGGTCGGCTTCCATTTCAGCTGCTCTGTGGGATAGC---TGCCTGGCTCCGtgccccacagcctgcgctttaagacagaccattctaacatagcctctccatttggtgaaaacacgttcaggcatttcacatgattcaatgacagaGAGAAACCGTTGGTTAGATACAGTCATCCATTT s panTro4.chr2B 153184829 1789 + 247518478 -TGAGGGAAGGTG-GAAATGGCCAAATCAGGTTCCCCAAGTGAGTGCATGCCGTCCGAGGGGCCGAGGAAGC-AGAGTTCTTCTGACATGGGCTCTCT-------------------------------------GTTTTAAAATATCAGCCCTTCTCCCATCTCATTATTTTTCCCCTGAAGCTCTTG--CACAAGCAAACTATAAATATATCCTCAAAGCC----TT-ATGTTTCATGACTCTTAGATGCACCCCAGAAATTAGTTTTCACTTGGGCACGGAGGAAGCTGTGAGGCTGTTCTCTGATCCCTCCAAATCCTGCAGAATTACTGCCTTTATTGTACAGAGCTAATAGGGTTGGAACAGAACCACGGTTTTAGCCTGATGACTCAGAATTTCAGACTGATGTGGAATATATTGC-TTTTTCCTCTCAATTTCAGTTTGAATCAGAAACTGCAACTGGAACAGGAGAAGCTTAGTTCTGATTATAACAAGCTGAAAATAGAGGACCAAGAGAGAGAAATGAAGCTGGAAAAGCTCTTGTGAGTGCACTCTAAATATTTCCT------CTATTTTCTCTCATCCCC--------------ATG-----------------------------ATATTCTGGTTAGA-TTGGGCTAATTTAAAAACAGACAGTGGC-TATTTGTGTGCTTGT-----TGGTGGGTTTTG-TTGATTTATCTGTG-GATGCAAATAGTATCTGCTGAAATCTCTGAGTCCCCTA---TGGTGGTCTATGGTTCCTTTTTGTTT---TTCAGATTGCTCAACGATAAAAGGGAACAAGCCAGAGAAGACCTCAAAGGGCTGGAGGAGACAGTGGTATGTCAAGATATTTCCCGATTTATGTTCGTCTCCAAGACCGGATTCATTTGTGATTTGTCGGATTGTTTATTTCAAAATTTTATCCATGCACACCTTTCT---------------GTGTAATGT---------------------------------------------------------TTTAGATAAGACATTCTA-----TGG---------AAAAGTAGGATTTGTAGAATTTAGTCCTCAACTTTTCACA----------------GAATCAGTCAAC----CAATCCATCTATC--------------------------------------------CTTAGAGCAGTAA-CCTGGAGCCCCTGAGTGAGGATTAAGCTGAATTGCAACTTA------GCAATTTTACA-GCCCTGCACTTTGTGACATACTTCCACTCAAcattcaacagatatttattgagcatctcctaacggctggcattcttcaacgtgcttgaat--atatccataaacaacagagataagatccctgtcctcatgaagcttacctttagctgtggg---------agacgataaacagtaaggaagcaaatcttgcactctatcagattgctatagaatgtgcataggttggtgcctgggggaggctccatgaggatttgacctttgagcagggactcgaagaaggagaagaactgag-cacagagatgtgttggg-gagagcattccaggcagaggcaacagctcatgccaaggccctgagataagcc---------cgggactgtcctgttgggggccagcagggaggtttgtgtggctgcagctgagggaaggaca------gggatataaggtgggcacagagaggtaaaggctgcagt-gattcaggccagataaaaccttgagacctgcagggctttggGTGGAGGAGTGATGGGCCCAACCTACCTTTGGAAGGGCTTGTTATTTGAAACCCTGGTTGGTTTTCTCTGTCGTGTGTCTGGGTTTGTTGGCATCATCTCCTCTGGTCGGCTTCCATTTCAGCTGCTCTGTGGGATAGC---TGCCTGGCTCCatgccccacagcctgcgctttaagacagacaattctaacatagcctctccgtttggtgaaaacacgttcaggcatttcacatgattcaacgacagagagaaacCGTTGGTTAGATACAGTCATCCATTT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38391378 1784 + 135000294 -GGAGGGAAGGTG-GTAATGGCCAAATCAGGTTCCCCAAGTGAGTGCATGCCGTCCGAGGGGCCGAGGAAGC-AAAGTTCTTCTGACATGGGCTCTCT-------------------------------------GTTTTAAAATATCAGCCCTTCTCCCATCTCATTATTTTTCCCCTGAAGCTCTTG--CACAAGCAAACTATAAATACATCCTCAAAGCC----TT-ATGTTTCATGACTCTTAGATGCACCCCAGAAATTAGTTTTCACTTGGGCAGGGAGGAAGCTGTGAGGCTGTTCTCTGATCCCTCCAATTCCTGCAGAATTACTGCCTTTATTGTACAGAACTAATAGGGTTGGAACAGAACCACGGTTTTAGCCGGATGACTCAGAATTTCAGACTGATGTGGAATATATTGC-TTTTTCTTCTCAATTTCAGTTTGAATCAGAAACTGCAACTGGAACAGGAGAAGCTCAGTTCTGATTATAACAAGCTGAAAATAGAGGACCAAGAGAGAGAAATGAAGCTGGAAAAGCTCTTGTGAGTGCACTCTAAATATTTTCT------CTATTTTCTCTCATCCCC--------------ATG-----------------------------ATATTCTGCTTAGA-TTGGGCTAATTTAAAAACAGACAATGGC-TATTTGTGTGCTGCT-----TGGTGGGTTTTG-TTGATTTATCTGTG-GATGCAAATAGTATCTGCTGAAATCTCTGAGTCCCCTA---TGGTGGTCTGTGGTTCCTTTTTGCTT---TTCAGATTGCTCAACGACAAAAGGGAACAAGCCAGAGAAGACCTCAAAGGGCTGGAGGAGACAGTGGTATGTCAAGATATTTCCTGATTTATGTTCATCTCCAAGACCGGATTCATTTGTGATTTCTCGGATTGTTTATTTCAAAATTTTATCCATGCACACCTTTCT---------------GTGTAATGT---------------------------------------------------------TTTAGACAAGACATTCTATTCTGTGG---------AAAAGTAGGATTTGTAGAATTTAGTCCTCAACTTTTCACA----------------GAATCAGTCAAC----CAATCCATCTATC--------------------------------------------CTTAGAGCAGTAA-CCTGGAGCCCCTGAGTGAGGATTAAGCTGAATTGCAACTTC------GCAATTTTACA-GCCCTGCACTTTGTGACATACTTCCACTCAAcattcaacagatatttattgagcatgtcctaatggctggcattcttcaaggtgcttgaat--atatccataaacaacagagataagatccctgtcctcatgaagcttacctttagctgcggg---------agacgataaacagtaaggaagcaaatcttgcactctatcagattaccatagaatgtacataggttggtgactgggggaggctccatgaggatgtgacctttgagcagggactcgaagaaggagaagaagtgag-catagagatgtgttggg-gagagcattccaggcagaggcaacagctcatgccaaggccctgagataagac---------cgggactgtcctgttgggggccagcagggaggtttgtgtggctgcagctgagggaaggaca------gggatataaggtgagcacagagaggtaaaggctgcagt-gattcagg----------ccttgagacctgcagggctttggGTGGAGGAGTGATGGGCCCAGCCTACCTTTGGAAGGGCTGGTTATTTGAAACCCTGGTTGGTTTTCTCTGTCCTGTGTCTGGGTTTGTTGGCATCAACTCCTCTGGTCGGCTTCCATTTCAGCTGCTCTGTGGGACAGC---TGCCTGGCTCCatgccccacagcctgcgctttaagacagaccattctaacatagcctctccatttggtgaaaacacattcaggcatttcacatgattcaacgacagagagaaacCGTTGGTTAGATACAGTCATCCATTT i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82344163 1790 - 85365473 -GGAGGGAAGGTG-GAAATGGCCAAATCAGGTTCCCCAAGTGAGTGCATGCCGTCCGAGGGGCCGAGGAAGCAAGAGTTCTTCTGACATGGGCTCTCT-------------------------------------GTTTTAAAATATCAGCCCTTCTCCCATCTCATTATTTTTCCCCTGAAGCTCTTT--CACAAGCGAACTATAAATACATCCTCAAAGCC----TT-ATGTTTCATGACTCTTAGATGCACCCCAGAAATTAGTTTTCACTTGGGCGGGGAGGAAGCTGTGAGGCTGTTCTCTGATCCCTCCAAATCCTGCAGAATTACTGCCTTTATTGTACAGAACTAATAGGGTTGGAACAGAACCACGGTTTTAGCTGGATGACTCAGAATTTCAGACTGATGTGGAATATATTGC-TTTCTCCTCTCAATTTCAGTTTGAATCAGAAACTGCAACTGGAACAGGAGAAGCTCAGTTCTGATTATAACAAGCTGAAAATAGAGGGCCAAGAGAGAGAAATGAAGCTGGAAAAGCTCTTGTGAGTGCACTCTAAGTATTTCCT------CTATTTTCTCTCATCCCC--------------ATG-----------------------------ATATTCTGGTTAGA-TTGGGCTAATTTAAAAACAGACAATGGC-TATTTGTGTGCTTGT-----TGGTGGGTTTTG-TTGATTTATCTGTG-GCTGCAAATAGTATTTGCTGAAATCTCTGAGTCCCCTA---TGGTGGTCTGTGGTTCCTTTTTGTTT---TTCAGATTGCTCAACGATAAAAGGGAACAAGCTAGAGAAGACCTCAAAGGGCTGGAGGAGACAGTGGTATGTCAAGATATTTCCCGATTTATGTTCGTCTCCAAGACCGGATTCGTTTGTGATTTGTCGGATTGTTTATTTCAAAATTTTATCCATGCACACCTTTCT---------------GTGTAATGT---------------------------------------------------------TTTAGACAAGACATTCTA-----TGG---------AAAAGTAGGATTTGTAGAATTTAGTCCTCAACTTTTCACA----------------GAATCAGTCAAC----CAATCCATCTGTC--------------------------------------------CTTAGAGCAGTAA-CCTGGAGCCCCTGAGTGAGGATTAAGCTGAATTGCAGCTTA------GCAGTTTTACA-GCCCTGCACTTTGTGACATACTTCCACTCAAcattcaacagatatttattgagcatctcctaacggctggcattcttcaaggtgcttgaat--atatccataaacaacagagataagatccctgacctcgtgaagcttacctttagctgcgag---------agatgataaacagtaaggaagccaatcttgcactctatcagattgctatagaatgtgcataggttgatgactgggggaggctccacgaggatgtgacctttgagcagggactcgaagaaggagaagaagtgag-catagagatgtgttggg-gagagcattgcaggcagaggcaacagctcatgccaaggccctgagataagcc---------cgggactgtcctgttgggggccagcagggaggtttgtgtggctgccgctgagggaaggaca------gggatataaggtgagcacagagaggtaaaggctgcagt-gattcaggccaggtaaaaccttgagacctgcagggctttggGTGGAGGAGTGACGGGCCCAACCTACCTTTGGAAGGGCTCGTTATTTGAAACCCTGGTTGGTTTTCTCCGTCCTGTGTCTGGGTTTGTTGGCATCATCTCCTCTGGTCAGCTTCCATTTCAGCTGCTCTGTGGGATAGC---TGCCTGGCTCCGtgccccacagcctgcgctttaagacagaccattctaacatagcctctccatttggtgaaaacgcgttcaggcatttcacatgattcaacgacagagagaaacCGTTGGTTAGATACAGTCATCCATTT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11955613 1790 + 106825570 -GGAGGGAAGGTG-GAAATGGCCAAATCAGGTTCCCCGAGGGAGCGCATGCCGTCGGAGGGGCTGAGGAAGC-AGAGTTCTTCTTACATGGGCTCTGT-------------------------------------GTTTTAAAATATCAGCCCTTCTCCCATCTCATTATTTTTCCCCTGAAGCTCTTG--CCCAAGCAAACTATAAATACATCCTCAAAGCC----TT-ATGTTTCATGACTCTTAGATGCACCCCAGAAATTAGTTTTCACTTGGGCAGGGAGGAAGCTGTGAGGTTGTTCTCTGATCCCTCCAAATCCTGCAGAATTACTGCCTTTATTGTACAGAACTAATAGGGTTGGAACAGAACCACGGTTTTAGCCGGATGACTCAGAATTTCAGACTGATGTGGAATATATTGC-TTTTTCCTCTCAATTTCAGTTTGAATCAGAAACTGCAACTGGAACAGGAGAAGCTCAGTTCTGATTATAACAAGCTGAAAATAGAGGACCAAGAGAGAGAAATGAAGCTGGAAAAGCTCTTGTGAGTGCACTCTAAATATTTCCC------CTATTTTCTCTCATCCCC--------------ATG-----------------------------ATATTCTGGTTAGA-TTGGGCTAATTTAAAAACAGACAATGGC-TATTTGTGTGCTTGT-----T-GTTGGTTTTGTTTGATTTATCTGTG-GATGCAAATAGTATCTGCTGAAATCTCTGAGTCCCCTA---TGGTGGTCTATGGTTCCTTTTTGTTT---TTCAGATTGCTCAACGATAAAAGGGAACAAGCCAGAGAAGACCTCAAAGGGCTGGAGGAGACAGTGGTATGTCAAGATATTTCCCGATTTATGTTCGTCTCCAAGACCAGATTTGTTTGTGATTTGTCGGATTGTTTATTTCAAAATTTTATCCATGCACACCTTTCT---------------GTGTAATGT---------------------------------------------------------TTTAGATAAGACATTCTA-----CGG---------AAAAGTAGGATTTGTAGAATTGAGTCCTCAACTCTTCACA----------------GAATCAGTCAAC----CAATCCACCTATC--------------------------------------------CTGAGAGCAGTAA-CCTGGAGCCCCTGAGTGAGGATTAAGCTGAATTGCAACTTA------GCAATTTTACA-GCCCTGTACTCTGTGACATACTTCCACTCAAcattcaacagatatttattgagcgtctcctaacggctggcattcttcaaggtgcctgaat--atatccataaacaacagagataagatctctgtccttatgaagcttacctttagctgcgag---------agatgataaacagtaaggaaacaaatcttgcactctatcagatggctatagaatgtgcagaggttgttgactgggggaggctccatgaggaggtgacctttgagcagggactcgaagaaggagaagaagtgagccatagagatatgtgggg-gagagcattcctggcagaggcaacagctcatgccaaggccctgagataagcc---------caggactctcatgttgggggccagcagggaggtttgtgtagctgcagctgagggaaggaca------gggatataaggtgagcacagagaggtaaaggccacagt-gatgcaggccaggtaaaactttgagacctgcagggctttggGTGGAGGAGTGATGGGCCCAGCTTCCCTTTGGAAgggctcgttatttgaaaccctggttggttttctctgtcctgtgtctgggtttgttggcatcatctcctctggtcggcttccatttcagctgctctgtgggatagc---tgcctggctccatgccccacagcctgcgcttcaagacagaccattctaacatagcctctccatttggtgaaaacacgttcaggcatttcacatgattcaacgacagggagaaactGTTGGTTAGATACAGTCATCCATTT i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37659256 1790 + 132586672 -GGAGGGAAAGTG-GAAATGGCCAAATCAGGTTCCCCGAGGGAGCGCATGCCGTCGGAGGGGCTGAGGAAGC-AGAGTTCTTCTTACATGGGCTCTGT-------------------------------------GTTTTAAAATATCAGCCCTTCTCCCATCTCATTATTTTTCCCCTGAAGCTCTTG--CCCAAGCAAACTATAAATACATCCTCAAAGCC----TT-ATGTTTCATGACTCTTAGATGCACCCCAGAAATTAGTTTTCACTTGGGCAGGGAGGAAGCTGTGAGGTTGTTCTCTGATCCCTCCAAATCCTGCAGAATTACTGCCTTTATTGTACAGAACTAATAGGGTTGGAACAGAACCACGGTTTTAGCCGGATGACTCAGAATTTCAGACTGATGTGGAATATATTGC-TTTTTCCTCTCAATTTCAGTTTGAATCAGAAACTGCAACTGGAACAGGAGAAGCTCAGTTCTGATTATAACAAGCTGAAAATAGAGGACCAAGAGAGAGAAATGAAGCTGGAAAAGCTCTTGTGAGTGCACTCTAAATATTTCCC------CTATTTTCTCTCATCCCC--------------ATG-----------------------------ATATTCTGGTTAGA-TTGGGCTAATTTAAAAACAGACAATGGC-TATTTGTGTGCTTGT-----T-GTTGGTTTTGTTTGATTTATCTGTG-GATGCAAATAGTATCTGCTGAAATCTCTGAGTCCCCTA---TGGTGGTCTATGGTTCCTTTTTGTTT---TTCAGATTGCTCAACGATAAAAGGGAACAAGCCAGAGAAGACCTCAAAGGGCTGGAGGAGACAGTGGTATGTCAAGATATTTCCCGATTTATGTTCGTCTCCAAGACCAGATTTGTTTGTGATTTGTCGGATTGTTTATTTCAAAATTTTATCCATGCACACCTTTCT---------------GTGTAATGT---------------------------------------------------------TTTAGATAAGACATTCTA-----CGG---------AAAAGTAGGATTTGTAGAATTGAGTCCTCAACTCTTCACA----------------GAATCAGTCAAC----CAATCCACCTATC--------------------------------------------CTGAGAGCAGTAA-CCTGGAGCCCCTGAGTGAGGATTAAGCTGAATTGCAACTTA------GCAATTTTACA-GCCCTGTACTCTGTGACATACTTCCACTCAAcattcaacagatatttattgagcgtctcctaacggctggcattcttcaaggtgcctgaat--atatccataaacaacagagataagctctctgtccttatgaagcttacctttagctgcgag---------agatgataaacagtaaggaaacaaatcttgcactctatcagatggctatagaatgtgcagaggttgttgactgggggaggctccatgaggaggtgacctttgagcagggactcgaagaaggagaagaagtgagccatagagatatgtgggg-gagagcattcctggcagaggcaacagctcatgccaaggccctgagataagcc---------caggactctcatgttgggggccagcagggaggtttgtgtagctgcagctgagggaaggaca------gggatataaggtgagcacagagaggtaaaggccacagt-gatgcaggccaggtaaaactttgagacctgcagggctttggGTGGAGGAGTGATGGGCCCAGCTTCCCTTTGGAAGGGCTCGTTATTTGAAACCCTGGTTGGTTTTCTCTGTCCTGTGTCTGGGTTTGTTGGCATCATCTCCTCTGGTCGGCTTCCATTTCAGCTGCTCTGTGGGATAGC---TGCCTGGCTCCatgccccacagcctgcgcttcaagacagaccattctaacatagcctctccatttggtgaaaacacgttcaggcatttcacatgattcaacgacagggagaaactGTTGGTTAGATACAGTCATCCATTT i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11316447 1791 + 104110932 -GGAGGGAAGGTG-GAAATGGCCAAAACAGGTTCCCCGAGGGAGCGCATGCCGTCGGAGGGGCTGAGGAAGC-AGAGTTCTTCTTACATGGgctctgt-------------------------------------gttttaaaatatcagcCCTTCTCCCATCTCATTATTTTTCCCCTGAAGCTCTTG--CCCAAGCAAACTATAAATACATCCTCAAAGCC----TT-ATGTTTCATGACTCTTAGATGCACCCCAGAAATTAGTTTTCACTTGGGCAGAGAGGAAGCTGTGAGGTTGTTCTCTGATCCCTCCAAATCCTGCAGAATTACTGCCTTTATTGTACAGAACTAATAGGGTTGGAACAGAACCACGGTTTTAGCCGGATGACTCAGAATTTCAGACTGATGTGGAATATATTGC-TTTTTCCTCTCAATTTCAGTTTGAATCAGAAACTGCAACTGGAACAGGAGAAGCTCAGTTCTGATTATAACAAGCTGAAAATAGAGGaccaagagagagaaatgaagctGGAAAAGCTCTTGTGAGTGCACTCTAAATATTTCCC------CTATTTTCTCTCATCCCC--------------ATG-----------------------------ATATTCTGGTTAGA-TTGGGctaatttaaaaacagacaatGGC-TATTTGTGTGcttgt-----tggttggttttgtttgatTTATCTGTG-GATGCAAACAGTATCTGCTGAAATCTCTGAGTCCCCTA---TGGTGGTCTAtggttcctttttgttt---ttcagattgctCAACGATAAAAGGGAACAAGCCAGAGAAGACCTCAAAGGGCTGGAGGAGACAGTGGTATGTCAAGATATTTCCCGATTTGTGTTCGTCTCCAAAACCAGATTTGTTTGTGATTTGTCggattgtttatttcaaaattttatccATGCACACCTTTCT---------------GTGTAATGT---------------------------------------------------------TTTAGATAAGACATTCTA-----CGG---------AAAAGTAGGATTTGTAGAATTTAGTCCTCAACTCTTCACA----------------GAATCAGTCAAC----CAATCCACCTATC--------------------------------------------CTGAGAGCAGTAA-CCTGGAGCCCCTGAGTGAGGATTAAGCTGAATTGCAACTTA------GCAATTTTACA-GCCCTGTACTCTGTGACATACTTCCACTCaacattcaacagatatttattgagcgtCTCCTAACGGCTGGCATTCTTCAAGGTGCCTGAAT--ATATCCATAAACAACAGAGATAAGATCTCTGTCCTTATGAAGCTTACCTTTAGCTGCGAG---------AGATGATAAACAGTAAGGAAACAAATCTTGCACTCTATCAGATGGCTATAGAATGTGCAGAGGTTGGTGACTGGGGGAGGCTCCATGAGGAGGTGACCTTTGAGCAGGGACTCgaagaaggagaagaagtgaGCCATAGAGATATGTGGGG-GAGAGCATTCCTGGCAGAGGCAACAGCTCATGCCAAGGCCCTGAGATAAGCC---------CAGGACTCTCATGTTGGGGGCCAGCAGGGAGGTTTGTGTAGCTGCAGCTGAGGGAAGGACA------GGGATATAAGGTGAGCACAGAGAGGTAAAGGCCACAGT-GATGCAGGCCAGGTAAAACTTTGAGACCTGCAGGGCTTTGGGTGGAGGAGTGATGGGCCCAGCTTCCCTTTGGAAGGGCTCGTTATTTGAAACCCTGGTTGGTTTTCTCTGTCCTGTGTCTGGGTTTGTTGGCATCATCTCCTCTGGTCGGCTTCCATTTCAGCTGCTCTGTGGGATAGC---TGCCTGGCTCCATGCCCCACAGCCTGCGCTTCAAGACAGACCATTCTAACATAGCCTCTCCATTTGGTGAAAACACGTTCAGGCATTTCACATGATTCAACGACAGGGAGAAACTGTTGGTTAGATACAGTCATCCATTT i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34416505 1791 + 128595539 -GGAGGGAAGGTG-GAAATGGCCAAATCAGGTTCCCCGAGTGAGCGCATGCCGTCGGAGGGGCTGAGGAAGC-AGAGTTCTTCTTACATGGGCTCTGT-------------------------------------GTTTTAAAATATCAGCCCTTCTTCCATCTCATTATTTTTCCCCTGAAGCTCTTG--CACAAGCAAACTATAAATACATCCACAAAGCC----TT-ATGTTTCATGACTCTTAGATGCACCCCAGAAATTAGTTTTCACTTGGGCAGGGAGGAAGCTGTGAGGTTGTTCTCTGATCCCTCCAAATCCTGCAGAATTACTGCCTTTATTGTACAGAACTAATGGGGTTGGAACAGAACCACGGTTTTAGCCGGATGACTCAGAATTTCAGACTGATGTGGAATATATTGC-TTTTTCCTCTGAATTTCAGTTTGAATCAGAAACTGCAACTGGAACAGGAGAAGCTCAGTTCTGATTATAACAAGCTGAAAATAGAGGACCAAGAGAGAGAAATGAAGCTGGAAAAGCTCTTGTGAGTGCACTCTAAATATTTCCC------CTATTTTCTCTCATCCCC--------------GTG-----------------------------ATATTCTGGTTAGA-TTGGGCTAATTTAAAAACAGACAATGGC-TAtttgtgtgcttgt-----tggttagttttgtttgatttatctgtG-GATGCAAATAGTATCTGCTGAAATCTCTGAGTCCCCTA---TGGTGGTCTGTGGTTCCTTTTTGTTT---TTCAGATTGCTCAATGATAAAAGGGAACAAGCCAGAGAAGACCTCAAAGGGCTGGAGGAGACAGTGGTATGTCAAGATATTTCCTGATTTATGTTCATCTCCAAGACCAGATTTGTTTGTGATTTGTCGGATTGTTTATTTCAAAATTTTATCCATGCACACCTTTCT---------------GTGTAATGT---------------------------------------------------------TTTAGATAAGACATTCTA-----CGG---------AAAAGTAGGATTTGTAGAATTTAGTCCTCAACTCTTCACA----------------GAATCAATCAAC----CAATCCACCTATC--------------------------------------------CTTAGAGCAGTAA-CCTGGAGCCCCTGAGTGAGGATTAAGCTGAATTGCAACTTA------GCAATTTTACA-GCCCTGTACTCTGTGACATACTTCCACTCAAcattcaacagatatttattgagcatctcctaatggctggcattcttcaaggtgcctgaat--atatccataaacaacagagataagatctctgtccttatgaagcttacctttagctgcgag---------agatgataaaaagtaaggaaacaaatcttgcactctatcagatggctatagaatgtgcaggggttggtgactgggggaggctccatgaggaggtgacctttgagcagggactcgaagaaggagaagaagtgagccatagagatatgtgggg-gagagcattcctggcagaggcaacagctcatgccaaggccctgagctaagcc---------caggactgtcatgttgggggccagcagggaggtgtgtgtagctgcagctgagggaaggaca------gggatataaggtgagcacagagaggtaaaggccacagt-gatgcaggccaggtaaaactttgagacctgcagggctttggGTGGAGGAGTGATGGGCCCAACTTCCCTTTGCAAGCGCTCGTTATTTGAAACCCTGGTTGGTTTTCTCTGTCCTGTGTCTGGGTTTGTTGGCATCATCTCCTCTGGTCGGCTTCCATTTCAGCTGCTCTGTGGGATAGC---TGCCTGGCTCCatgccccacagcctgcgcttcaagacagactattctaacatagcctctccatttggtgaaaacacgttcaggcatttcacatgattcaacgacagggagaaactGTTGGTTAGATACAGTCATCCATTT i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87900354 1773 - 158406734 -GGAAGGAAGGTG-GAAATGGCCAAATGAGGTTCCCCAAGTGAGTGCATGCCGTCGGAGGGGCCGAGGAAGC-AGAGTTCTTCTGATATGGGTTCTCT-------------------------------------GTTTTAAAATATCAGCCCTTCTCCCATCTCAT--ATTTTTCCCTGAAGCTCTTG--CGCAAGCAAACTATAAATACATCCTCAAAGCC----TT-ATGTTTCATGCCTCTTAGATGCACCCCAGAAATTAGTTTTCACTTGGGCAGGGAGGAAGCTGTGTGACTGTTCTCTGATCCCTCCAAATCCTGCAGAATTACTGCTTTTATTGTACAGACCTAATGGGGTTGGAACAGAACCACGGTTTTAGCTGGATGACTCAGAATTTCAGACTGATGTGGAATATATTGC-TTTTTCCTCCCAATTTCAGTTTGAATCAGAAACTGCAACTGGAACAGGAGAAGCTCAGTTCTGATTATAACAAGCTGAAAATAGAGGACCAAGAGAGAGAAATGAAACTGGAAAAGCTCTTGTGAGTGCACTCTAAATATTTCCT------CTATTTTCTCTCATCCCC--------------GTG-----------------------------ATATTCTGGTTAGA-TCAGGCTAATTTAAAAACAGACAATGGC-TATTTGTGTGCTTGT-----TGGTTGGTTTTG-TTGATTTATCTATG-GATGCAAATAGTATGTGCTGAAACCTCTGAGTCCCCTC---TGGTGATCTGTGGGTTTGTTTTTTTTCCCCCCAGATTGCTGAATGATAAAAGGGAACAAGCCAGAGAAGACCTCAAAGGGCTGGAGGAGACAGTGGTATGTCAGGACGTTTCCCAATTTATTTTCATCTCCAAGACCGGATTCGTTTGTGATTGGTTGGATTGTTTATTCCAAAATTTTATCCATGCACACCTTTCT---------------GTGTAATAT---------------------------------------------------------TTTATATAAGACATTGTG-----TGG---------AAAAGTAGGATTTGTAGAATTTATTCCTCAGCTCTTCACA----------------GAATCAATCAAC----CAATCCATTCATC--------------------------------------------CTTAGAGCAGTAA-CCTGGAGCCCCAGAGTGAGAATTAAGCTGAATTGCAACTCA------GCAATTTTACA-GCCCTGCACTTTGTGACATACTTCCACTCAAcattcaacagatatttattgagcatctcctaagggctggcattctccaaggtgcttgaat--atacccataaacaacagcgataagatcccttccctcgtgaagcttacctttagctgggag---------agacgataaaaaataaggaagcaaatcttgcactctatc----------agaacatgcatagggtggtgactaggggaggctccctgagcatgtgagcatttagcagggactcga------agcagaagtgagccacagagatgtgtgggg-gagagcattccaggcagaggcaacagcttatgccaaggcctggagataagcccagcactgtcaggactatcatgttgggggctggcagggaggtctgtgtg------gctgagggagggaca------tggatacaaggtgagca-----aggtaaagcctgcagt-gatgcaggccaggtaaaaccttgaggctggtagggctttggGTGGAGGAGTGACAGGCCCACCTTACCTTTGGAAGGGCTGGTTATTTGAAACGTTGGCTGTTTTTCTCTGTCCTGTGTCTGGGTTCATTGGCGTCATCTcctctggtcggcttccatttcagctgctctgtgggatagc---tgcctggctccatgccccacagcctgtgctttgagacagaccattccaacatagcctctccatttggtgaaaacacgttcagacatttcacatgattcaacgacagagagaaactGTTGTTTAGACACAGTCATCCATTT i calJac3.chr6 C 0 C 0 s mm10.chr2 49743930 1567 + 182113224 -GGGGGGATGCTGTTGAATGGCCAAATAG---TTACTGAGTATACAGCTGTTCTCTGGGTGTGTATAGCAGC-AGAGTGTATATAACA-GGGctcattctctttctctttccctccccctccctccctcctctctATGTTCAAGCATCATCTTTTCTCCAATGTCATTATATCCCCACAG-AGCCCTTGCACACAAACAAACTATAAATACAACCGCAAAGCCTTTGTT-TCATTTCATGCTTCCGAGCTGCTCCCCAGAAATTAGTTTTCACTCGGGCAGAGAAGAAGCTGTGAAGTTGTTCTCTGATCCCTCAAAATCCTCCCGAATTGTTGCCTTTATTGCCCAGAACTAATGGGGCTGGAAGAGAACCAGCGCTTTCGGCGGATGACTCAGAAGTTCAAGCTGACCTGGAATATATTGC-TTTTTCCTCTCAATTTCAGTTtgaatcagaaactgcaactggaacaggagaggctcagctctgattataacaagcTGAAAATAGAGGACCAGGAGAGAGAAGTGAAACTGGAGAAGCTCCTGTGAGTGC---CTTAACCCTCCCTGACTCGTCATCCCCTCCCACTCCCCAGGGCCAGCCCTAGTG-----------------------------GAGCCCTGG--AGACTCCTGCTG--TTCAAAGCAG-CAGTGGCTTGCTTGGGCCTTTCTCTGCCTAGCCTTCCTTG-CTGAGGTATGCCTGAGGTGCAAACTGCATCTGCTCCAAT-TCTGGTGCTGCTGCCTCAGTGGCTCACGATTCCTTTCTGTCT---CTCAGATTGCTCAATGACAAAAGGGAGCAAGCCAGGGAGGACCTCAAGGGACTGGAGGAGACTGTGGTGAGTCA-----CTCCCCAACCCAGCTCACTCCCAGAGGCCTGATTTGTTTGTCACCTACCGAACTGTCTAATCTAAAATTTTATCTTCACACACCCTTTC---------------CTGTAGAGC--------------------------------------------------------ATTTAGACTAAGCACTCGG-----TGG---------CAGACTGGGATTTGTGGATTT--------ACTTCTTAACA----------------GAATTAATCCATTGGATACTTAGTCAGTT--------------------------------------------ATTAGTGTTGTAATCCTGAGATACTTGAATAAGAATTGAGCTCCATCGTAA---A------GCAGTGT--------CTGCACTTTGTGACG-----CCACTCCACTCTGAACAGATATTTAGCGAGCA-----TGGAGGCGGGC------------------------------------------------CCTGGTCCTGATG--GCTGATC-----------------------AGTACACACTGTAGAGAGG----TCTTGTCCTCTA----------------------------------------------------------------------------------GGTGCTGAGGTGAG-CAGAG---------GGG-AAGAGCAC-----ACAGGGGCAGTGACTTGTGG----------------------------CAG------------------CAACAGGGACATCAGTGTG----CAACTGGGTGATGGGGGCGCGGCGGGTTAGAAGGCAGGCACAT-GAGGATAGTACCGGAGT-----------AGGTG---CCTTGATGGGGGAGGGGC---AGAAAGAAGAGCAGGAGGCTCTGCTTGCCTCTGAAGGGGCTCCAATTTTGAAATTACTGTTGGGTTTCTTTG--CTATGCCTATAGCTGCTGGC-----TTCCCCTGG-CAGCTTTGGTTTTGGTGGCTGTGCAGGGCAGC---AGCTTGGTCACACG--TCACAG-CTGTGGCTTATCACAAACCATCCCAACA-----GCTTAACACAGTGAAAATGTGTTTAGGC-TTGCACA-------------------------CGTTTAAATTCAGCAGTGCCTTC i mm10.chr2 I 478 C 0 s canFam3.chr19 50657872 1887 + 53741614 GGAAGGGAAGGTT-GAAATGGCAAAATGAGGTTTCCCGAGTGGGTACATGCCATCTGTAGGGCAGACAGAGC-CGAACTGTTCTGAC-TATCCTCTCT-------------------------------TTCTCTGTTTTAAAATATCAGCCCTTTCCCTATCTCATTATTTCTCCCCCAAAGCTCTTG--CACAAGCCAACTATAAATATGTTCTCAAAGCC----TGAATGTTTCATGCCTCTGAGATGT-TCTCAGAAATTAGTTTTCACTTGGGCGGGGAGGAAGCTGTGAGGTTGTTCTGTGATCCCTCAGAATCCTCCAGAATTGCCGCCTTTATTGCACAGAACTAATGGGGTTGGAACAGCCCCGTGTCTTTGG-TGGGTGCCTCGGAATTTCAGACTCATGGGGAATGTATTGCTTTTTTCCCCTCAATTTCAGTTTGAATCAGAAACTGCAACTGGAACAGGAGAAGCTCAGTTCTGATTATAACAAGCTGAAAGTAGAAGACCAAGAGAGAGAAATGAAACTGGAAAAGCTCTTGTGAGTGCACTTGAAATACTTCCT------CTGTTTTCTCTCCTCCCC--------------GCGGAGTCTACTTCTGTGATCCCGATTCCTCAATATTCTGGTTGGG-TTGGGCCAATGTAGAAATACTCAGAGCC-TATTTGTGTG--AAT-----TGGCTGGCTTTG-TCGATTAATCCATA-GGTGCAGATGGAATCTG--GAAATCTCTGATGCCCGTT---TGGTGGTTCATGATTCCTTTTTATTT---TTTAGATTGCTCAACGATAAGAGGGAACAGGCCAGAGAGGACCTCAAAGGGCTGGAGGAGACAGTGGTACGTCAGCATGTTTCCCAACTCGTTTTAGTCCCAAAGACCCGATTAGTTTGTGATTTGTTG--------ACTTTGTAACTTGACGTGTGCCCACCTTTCTCACATACCATTTTCGATAAAATATTTAGGCAAATACCATATATTTAGACAGTAAGACAAATGCGGATATTTAGACGCTCCATTTAGACAAAATATCCTG-----TGGAAAGGTGAAAAAGGTGAGAATTGTAGAATTTATTCCTCAGCTCTTGACACCATGACTATCAGTCTGTGtccatccat----ccatccatccatccatccatccatccatctacccatctgtctgtctatccacccatGCTTAGTGCTATAACCCTGGAGGCCCTGAGTGAGAATTAAACTGACTTGCAAATCAATGCCTGAAACTTAACATACTTTGCACATTGCGACTTATTTCCATTCAGCATCCAA------------gggcacttactaaggaccggtgttcttctaggtgctcgccttgttatcaataaatgacaaagataagaccctggcccttgtgaaccttgccttcagccaggggtaggggaacagacagtgcacagtaaggaaggaaaTCATGACCTCCATTACATGGTCCTAGAAAACGCA-----------------Gaggtcccacgaggaggtgaagtttgagcagggacttgaagcgggtgaaagagcaagccgtggggaggcctggggagagggtcttccaagcacaggc------------------ccggaggtgagac---------gatggttggtgggttgaggaccagcaggaaagtcagt---------gatgcggggag----------gagacaagaggTTGGCACAGAAGTGTCAGGGCAAGAGCAGTTGTAGGGCAAGTAGGGCCTTGAGACCTGCAGGG-TTTGGGCACAAGACAGA----------------TCAGAAGGGCTC---ATGTGAAATCCTGCTTGATTTTCTCCATCCAGCATCTGAGTTCATTAGGTTTGTCTGCCCTGGTTGATGTCCATGTCAGCTGCTCGGAGGGCCCTCGAGAGCCCTTCAAAGCAccacacagcctgtgtttgaagacagac----ccaacagagcctctcaatttggtgaaaacatgtccagtcatttCACATGACAAAACAACGGA-------TATTATTTAGATACAGCCGTACACtt i canFam3.chr19 C 0 I 222 a score=1908165.000000 s hg38.chr2_GL582966v2_alt 73824 612 + 96131 TGGCTCCGTTCATGGGTCATGTGGATCTGTGTGGGACTGA-TC-CATCTTCAAGGACCTGG-TGACCCCACATTGGT--GGGAACTGGTTGCTTGGGTCTGGCCCTGAGATTGTGCTCTGGCCCATGGACTAGTCATATTTGTTGGACCTCAAAGCCAGGGAGAGGAAATGAGGGCACCAGCCATTGGAGACAGA----AGATGCCTGT-GTCCAAAGGGAGCTGGGCCTTTGGAGCATGGAGGAGGAGCCTGTGGAGGG--GGCTGCTGCCGGGGAAC-CCGAAATGAAGCCATGAAATTGCTTCATCTACATCTG-TTTTACCAGAGAAGTGATAATCCTAATTATAGATAATTATAGAAATTCAGAAAAATATTGAACATTAAAATTTCACTATATTTCTACCAGCCAGAGATCAGTGATATCAATGAAATATTTTGGGATGTTTTCTTCCTTTATATCCGTGAGCTCTCAGGCACTCTCACCCTACTGTCCCTAGCCATCCACGCTCTCTTTCAG------TCTCACTCACACCTACAACTCAA-GCA----------TGTGAGCACAT------------CATCACACACTCACAC--------------------------------------------CGGGGCTCAC-AAG------TCCCTTGCCCACACACGCAG---------------------------------------------------------------------TCAGCTGCTCACTCTCCTG---TT s panTro4.chr2B 153186618 612 + 247518478 TGGCTCCGTTCATGGGTCATGTGGATCTGTGTGGGACTGA-TC-CATCTTCAAGGACCTGG-TGACCCCACATTGGT--GGGAACTGGTTGCTTGGGTCTGGCCCTGAGATTGTGCTCTGGCCCATGGACTAGTCATATTTGTTGCACCTCAAAGCCAGGGAGAGGAAATGAGGGCACCAGCCATTGGAGACAGA----AGATGCCTGT-GTCCAAAGGGAGCTGGGCCTTTGGAGCATGGAGGAGGAGCCTGTGGAGGG--GGCTGCTGCTGGGGAAC-CCGAAATGAAGCCATGAAATTGCTTCATCTACATCTG-TTTTACCAGAGAAGTGATAATCCTAATTATAGATAATTATGGAAATTCAGAAAAATATTGAACATTAAAATTTCACTATATTTCTACCAGCCAGAGATCAGTGATATCAATGAAATATTTTGGGATGTTTTCTTCCTTTATATCCGTGAGCTCTCAGGCACTCTCACCCTACTGTCCCTAGCCATCCACGCCCTCTTTCAG------TCTCACTCACACCTACAACTCAA-GCA----------TGTGAGCACAT------------CATCACACACTCACAC--------------------------------------------CGGGGCTCAC-AAG------TCCCTTGCCCACACACGCAG---------------------------------------------------------------------TCAGCAGCTCACTCTCCTG---TT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38393162 611 + 135000294 TGGCTCCGTTCATGGGTCATGTGGATCTGTGTGGGACTGA-TC-CATCTTCAAGGACCTGG-TGACCCCACTTTGGT--GGGAACTGGTTGCTTGGGTCTGGCCCTGAGATTGTGCTCTGGCCCATGGACTAGTAATATTTGTTGCACCTCAAAGCCAGGGAGAGGAAATGAGGGCACCAGCCATTGGAGACAGA----AGATGCCTGT-GTCCAAAGGGAGCTGGGCCTTTGGAGCATGGAGGAGGAGCCTGTGGAGGG--GGCTGCTGCTGGGGAAC-CTGAAATGAAGCCATGAAATTGCTTCATCTACATTTG-TTTTACCAGAGAAGTGATAATCCTAATTATAGATAATCATAGAAATTCAGAAAAGTATTGAACATTAAAATTTCACTATATTTCTACCAGCCAGAGATCAGTGATATCAATGAAATATTTTGGGATGTTTTCTTCCTTTATACCCGTGAGCTCTCAGGCACTCTCACCCCACTGTTCCTAGCCATCCATGCCC-CTTTCAG------TCTCACTCACACCTACAACTCAA-GCA----------CGTGAGCACAT------------CATCACACACTCACAC--------------------------------------------CGGGGCCCAC-AAG------TTCTTTGCCCACACACGCAG---------------------------------------------------------------------TCAGCTGCACACTCTCCTG---TT i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82345953 610 - 85365473 TGGCTTCGTTCATGGGTCATGTGGATCTGTGTGGGACGGA-TC-CATCTTCAAGGACCTGG-TGACCCCACATTGGT--GGGAACTGGTTGCTTGGGTCTGGCCCTGAGATTGTGCTCTGGCCCATGGACTAGTAATATTTGTTGCACCTCAAAGCCATGGAGAGGAAATGAGGGCAGCAGCCATTGGGGACAGA----AGATGCCTGT-GTCCAAAGGGAGCTGGGCCCTTGGAGCGT---GGAGGAGCCTGTGAAGGG--GGCTGCTGCTGGGGAAC-CTGAAATGAAGCCCCGCAATTGCTTCATCTACATCTG-TTTTACCAGCGAAGTGGTAATCCTAATTATAGATAATTATAGAAATTCAGAAAAATATTGAACATTAAAATTTCACTATATTTCTACCAGCCGGAGATCAGTGATACCAATGAAATATTTTGGGATGTTTTCTTCCTTTATACCCGTGAGCTCTCAGGCACCCTATCCCCACTGTCCCTAGCCATCCATGCCCTCTTTCAG------TCTCACTCACACCTACAACTCAA-GCA----------CGCGAGCACAT------------CATCACACACTGACAC--------------------------------------------CGGGGCTCACAAAG------TCCCTTGCCCACACATGCGG---------------------------------------------------------------------TCAGCTCCTCACTCTCCTG---TT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11957403 602 + 106825570 TGGCTCCGTTCATGGGTCATGTGGATCTGTGTGGGACTGA-TC-CATCTCCAAGGACCTGG-TGACCCCACATTGGT--GGCACCTGTTTGCTTGGGTCTGGCCCCGAGATTGTGCTCTGGCCCCTGGACTTATAGTATTTGTTGCACCTCAAAGCCAGGGAGCGGAAATGAGGGCACCAGCCATTGGAGACGGA----AGATGCCTGT-GTCCAAAGGGAGCCGGGCATTTGGAGCATGGAGGAGGAGCCTGTGAAGGG--GACTGCTGCTGGGGAAC-CTGAAACGAAGCCACACAATTGCTTCATCTACATCTG-TTTTACCAGAGAAGTGATAATCCTAATTATAGATAATTATAGAAATTCAGAAAAATATTGAACATTAAAATTTCACTGTATTTCTACCAGCCAGAGATCAGTGATATCAATGAAATATTTTGGGATCTTCTCTTCCTTTACACCCGTGAGCTCTCAGGCACTCTCACCTCACTGTCCCTAGCCATCCACGCCCTCTTTCGG------TCTCACTGACATCTACAACTCAA-GCA----------CACGAGCACAT------------CATCACACACTCACAC--------------------------------------------CGGGGCTCAC-AAG------TCCCTT----------GCAG---------------------------------------------------------------------TCAGCTGCTCACTGTCATG---TT i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37661046 602 + 132586672 TGGCTCTGTTCATGGGTCATGTGGATCTGTGTGGGACTGA-TC-CATCTCCAAGGACCTGG-TGACCCCACATTGGT--GGCAACTGTTTGCTTGGGTCTGGCCCCGAGATTGTGCTCTGGCCCCTGGACTTATAGTATTTGTTGCACCTCAAAGCCAGGGAGCGGAAATGAGGGCACCAGCCATTGGAGACGGA----AGATGCCTGT-GTCCAAAGGGAGCCGGGCATTTGGAGCATGGAGGAGGAGCCTGTGAAGGG--GGCTGCTGCTGGGGAAC-CTGAAACGAAGCCACACAATTGCTTCATCTACATCTG-TTTTACCAGAGAAGTGATAATCCTAATTATAGATAATTATAGAAATTCAGAAAAATATTGAACATTAAAATTTCACTGTATTTCTACCAGCCAGAGATCAGTGATATCAATGAAATATTTTGGGATCTTCTCTTCCTTTACACCCGTGAGCTCTCAGGCACTCTCACCTCACTGTCCCTAGCCATCCACGCCCTCTTTCGG------TCTCATTGACATCTACAACTCAA-GCA----------CACGAGCACAT------------CATCACACACTCACAC--------------------------------------------CGGGACTCAC-AAG------TCCCTT----------GCAG---------------------------------------------------------------------TCAGCTGCTCACTGTCAGG---TT i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11318238 600 + 104110932 TGGCTCCGTTCATGGGTCATGTGGATCTGTGTGGGACTGA-TC-CATCTCCAAGGACCTGG-TGACCCCACATTGGT--GGCAACTGTTTGCTTGGGTCTGGCCCCGAGATTGTTCTCTGGCCCCTGGACTTAGAGTATTTGTTGCACCTCAAAGCCAGGGAGCGGAAATGAGGGCACCAGCCATTGGAGACAGA----AGATGCCTGT-GTCCAAAGGGAGCCGGGCATTTGGAGCATGGAGGAGGAGCCTGTGGAGGG--G-CTGCTGCTGGGGAAC-CTGAAACGAAGCCACACAATTGCTTCATCTACATCTG-TTTTACCAGAGACGTGATCATCCTAATTATAGATAATTATag-aattcagaaaaatattgAACATTAAAATTTCACTATATTTCTACCAGCCAGAGATCAGTGAtatcaatgaaatattttgggATCTTCTCTTCCTTTACACCCGTGAGCTCTCAGGCACTCTCACCTCACTGTCCCTAGCCATCCACGCCCTCTTTCGG------TCTCACTGACATCTACAACTCAA-GCA----------CACGAGCACAT------------CATCACACACTCACAC--------------------------------------------CGGGGCTCAC-AAG------TCCCTT----------GCAG---------------------------------------------------------------------TCAGCTGCTCACTGTCATG---TT i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34418296 602 + 128595539 TGGCTCCGTTCATGGGTCATGTGGATCTGTGTGGGACTGA-TC-CATCTCCAAGGACCTGG-TGACCCCACATTGGT--GGCAACTGTTTGCTTGGGTCTGGCCCCGAGATTGTGCTCTGGCCCCTGGACTTATAGTATTTGTTGCACCTCAAAGCCAGGGAGCGGAAATGAGGGCACCAGCCATTGGAGACAGA----AGATGTCTGT-GTCCAAAGGGAGCTGGGCATTTGGAGCATGGAGGAGGAGCCTGTGGAGGG--GGCTGCTGCTGGGGAAC-CTGAAACGAAGCCACACAATTGCTTCATCTGCATCTG-TTTTACCAGAGAAGTGATAATCCTAATTATAGATAATTATAGAAATTCAGAAAAATATTGAACATTAAAATTTCACTATATTTCTACCAGCTAGGGATCAGTGATATCAATGAAATATTTTGGGATCTTCTCTTCCTTTACACCTGTGAGCTCTCAGGCACTCTCACCCCACTGTCCCTAGCCATCCACGCCCTCTTTCGT------TCTCACTGACATCTACAACTCAA-GCA----------CACGAGCACAT------------CATCACACACTCACAC--------------------------------------------CGGGGCTCAC-ACG------TCCCTT----------GCAG---------------------------------------------------------------------TCAGCTGCTCACTGTCATG---TT i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87902127 599 - 158406734 TGGCTCCGTTCATGTGTCATGTGGATCTGTGAGGGACTGA-GC-CATCTCCAAGGACCTGG-TGACCCCACACTGGT--GGTGGTCAGTTACCTCAGTCTGGCCCCGAGACTGTGCCCTGGCCCCTGGACTAGTAGTATTTGCTGCACCTTGAAGCCGGGGAGAGGAAATGCGGGCACCAGCCATTGGAGACAGA----AGATGCCTGT-GTCCAAAGGAAGCTGGGTCTTTCGAATATGGAGGAGGAGCTTGTGGAGGG--AGCCG--GCAAGGGAAC-CTGAAACAAAGCCACAAAATTGCTTTATCTACATCTG-TTTTACCAGAGAAGTGATAATCCTCATTATAGATAATTATAGAAATTCAGAAAAATATTGAACATTACAATTTCACTGTATTACCACCAGCCAGAGATCCCTGATATCAATGAAATATTTTTGGATGCTTTCTTCCTTCATACCTGTGAGTTCTCAGGCACTCTCACCCCACTGTCCCTACCCATCCACGCCCTCTTTCAG------TCTCACTCACAGCTACAACTCAAGGCA----------CATGAGCA---------------CATAACACACTCACAC--------------------------------------------AGGGACTCA--AAG------GCCCTTGCCCACAC--ACAG---------------------------------------------------------------------TCAGCTGCTCA------TG---CC i calJac3.chr6 C 0 C 0 s mm10.chr2 49745497 685 + 182113224 TGATCCCACTCACGTGTCACGGGAGTCTAT--GGGACAGAGCC-CATTCACGACAACCTGG-AGA-CCCAGACTGTA--GGCAGATGGCTACTCCCATCTGGAGCCGAGGCTGCATGCCGGCTCCTGGGTCAGTACAAAGTGCT---CCTCAGA-----------GAAACGAGGACA-CAGCCTTTGG-GACAGGGGCCAGATGCCTGT-GCTGACAGGAGGTTGGACCTTTCGAG------GGTGATGTCTATA-----------------GGGAAAG-CAGACACAAAGCCATGAGGTCACTTCATCTCTA--------TAGTAGAGCAACGCAGTGCATAACGGAGTGTTCTTATGAGAGTGCAGAGAAATAGTAAACACTGAACGTTTACTAGATTCCCGCCATCCTGG------------CTGTATGATAATTCCAGATGCTCTCTGCTTGTGC-CCCGTGTGCACCCCGACACCCGTGCACCCTTGT---TTACCTTCTGTG-TCTCTGCTGT------CCTCACACAAAGCT--GGCACAT-GCA----------GTTGCACACACGGCTTGTCAGCACGCCACATACTCACTTTTGTGATGTCCTCTGGGCTTGGCCACAGGATCTGATtgttcatacggtgttcat-acggtgtATTCCTATACACGCACACACAGCTGCATCTCACTAATGATTTTTTTTTATTCAAAAGCATTCTACTCATTTTACATAAGTTGTTGTATACTTCAGACTCATACTTGCTTGCCTTT i mm10.chr2 C 0 C 0 s canFam3.chr19 50659981 594 + 53741614 TGATTCCATTCACGTGTTGTGTGAGTTCATGTGGGACTGT-GCGTGTCTCCAAGAGCCTGGTTGACCCCAGGCTGTATGGGCCGATGGGTGCCCGGGGCTGGGCCTGATTGTGCACCCCGTTTCCTGGGCTGACGTTA---GCTGCCCCTCAAAGCCAGGTGGAGGGACGGAGGGCACCGTCCAGCCAGGACAGAAGTAAGATGATTGTGGCCCAGAGGGTCTCGGGCCTTTCCAACAGGGTGGAGAAGGTGGCGGATGGCCGGCTGGCTCTAGGGGACGCGGAAATGAAGCCATGAAGTTGC-CCATCTATGTCTATTTTTACGGGAGAAGTGATACTCACAGTTATAGATGATTCTAAAAATTCAGA-AAATACTGAACTTCAAAATGTTACCATATTCCCACTAGCCAGAGATAAGGGA--------------------------CCTTCC------ACCACGGACTC-------CCCTCACTCAGC--TCCCTGCCCGTCCTTGCCCTCCTGCAGATGCTCTCACGCTCGCGCTCCCACTCCGT-GCAGTCACTTGTCCTCTCGTGCAC------------TCTGGCACACTCACAG----------------------------------------CACACGCGGGCCGC-AGG-------CCCTCCCTCACACCCGCAG-------------------------------------------------------------------------GTGCTCGCTTCCATG---TT i canFam3.chr19 I 222 I 5 a score=1623021.000000 s hg38.chr2_GL582966v2_alt 74436 591 + 96131 CTCATGCCTCTGCGCAGCCGCACTCAC------------------TCCTGCATGCTCCTCCATACACAAGTACTT------------acaacacacactctt-----------------------------------gctcacacacagaa-----catgcacacttgcattcacacacacaACTTGCATGCACACTA------------------------ATGATCGTCCACACTTTCTCACTCGCACATTC----------------------ACACA---ATCACTCTCGTGCAGTT-CTCACCCTCACTC-CCCTTGCTTGCCTTCACTCACACCCACACGCATGTTCACACTCCCTTGTACA------------------------CTTACACAGATGCTGTCTCAGGACACTCCCCCTCAC------------ACGCACGCAGGCGCATTCACACCCGTCA--CTCATACACTCATTCAC------------------------------------------------------------TGTCACAACCACCTCCGTTCACAGGCACACTCATTTCCATGCTCACGGACTCACATGCTTTCTCCTCTCATACACTCAGGAGTGTGATATTTAAAGAAT-GTTTCATCAG-CTCTTTTGCCTTTTTTGAAGTTCGAGTG--GTCTTTTGCGTCTTTTGAATGACGTATTTTCCTCACTAGCTCCTCCCGTCTCCCT-----GCTCGTCCGTTCTCTCTCCC---ACGCTGGGCGCGGTTCCATGCGCAC--CCTCCCAGGCTGCTCCCCGCTC----TCAC s panTro4.chr2B 153187230 587 + 247518478 CTCATGCCTCTGCTCAGCCGCACTCAC------------------TCCTGCATGCTCCTCcatacacaagtactt------------acaacacacactctt-----------------------------------gctcacacacagaa-----catgcacacttgcattcacacacacaacttgcatgcacacta------------------------atgatcatccacactttctcactcgcacattc----------------------acaca---ATCACTCTCGTGCAGTTGCTCACCCTCACTC-CCCTTGCTTGCCTTCACTCACACCCACACCCATGTTCACACTCCCTTGTACA------------------------CTTACACAGATGCTGTCCCAGGACACTCCCCCTCAC------------ACACATGCAGGCGCATTCACACCCGTCACTCTCATACACTCATTCAC------------------------------------------------------------TGTCACAACCACCTCCGTTCACAGGCACACTCATTTCCATGCTCACGGACTCACATGCTTTCTCCTCTCATCCACTCAGGAGTGTGATATTTAAAGA--------ATCAA-CTCTTTTGCCTTTTTTGAAGTTCGAGTG--GTCTTTTGCGTCTTTTGAATGACGTATTTTCCTCACTAGCTCCTCCCATCTCCCT-----GCTCGTCCGTTCTCTCTCCC---ACGCTGGGCGCGGTTCCATGCGCAC--CCTCCCAGACTGCTCCCCACTC----TCAC i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38393773 585 + 135000294 CTCATGCCTCTGCTCAGCCGCGCTCAC------------------TCCTGCATGCTCCTCCATACACAAGTACTT------------ACAACACACACTCTT-----------------------------------GCTCACA----------------CACACTTGCATTCACACACACAACTTGCATGCACACTA------------------------ATGATCGTCCACGCTTTCTCACTCGCACATTC----------------------ACACA---ATCACTCTCGTGCAGTCGTTCACCCTCACTC-CCCTTGCTTGCCTTCACTCACACCCACACCCATGTTCACACTCCCTTGTATA----------------------CTCTTACACAGATGCTGTCCCAGGACACTCCCCCTCAC------------ATGCACGCAGGCACATTCACACCTGTCACTCTCATACACTCATTCAC------------------------------------------------------------TGTCACAACCACCTCCGTTCACACGCACACTCATTTCCATGCTCACGGACTCACATGCTTTCTCCTCTCATACACTCAGGAGTGTGATATTTAAAGAAT-GTTTCATCAG-CTCTTTTGCCTTTTTTGAAGTTCGAGTG--GTCTTTTGCGTCTTTTGAATGACGTATTTTCCTCACTAGCTCCTCCCGTCTCCCT-----GCTCGTCCGCTCTCCCTCCC---ACGCTGGGCACGGTTCCATGCGCAC--CTTCCCAGGCTGCTCCCCACTC----GCAC i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82346563 594 - 85365473 CTCATGCCTCTGCTCAGCTGCACTCAC------------------TCCTGCATGCTCCTCCATACACAAGTACTT------------ACA--ACACACTCTT-----------------------------------GTTCACACACAGAA-----CATGCACACTTGCATTCACACACACAACTTGCATGCACACTA------------------------ATGATCGTCCACACTTTCTCACTCGCACATTC----------------------ACACA---ATCACTCTTGTGCAGTTGCTCACTCTCACTC-CCCTTGCTTGCCTTCACTCACACCCACACCCATGTTCACACTCCCTTGTACA----------------------CTCTTACACAGATGCTGTCTTAGGACACTCCCCCTCGC------------ATGCACGCAGGCGCATTCACACCCGTCACTCTCATACACTCATTCAC------------------------------------------------------------TGTCACAACCACCTCCGTTCACACGCACACTCATTTCCATGCTCATGGACTCACATGCTTTCTCCTCTCATACACTCAGGAGTGTGATATTTAAAGAAT-GTTTCATCAG-CTCTTTTGCCTTTTTTGAAGTTCGAGTG--GCCTTTTGCGTCTTTTGAATGACGTATTTTCCTCACTAGCTCCTCCCGTCTCCCC-----GCTCGTCTGCTCTCCCTCCC---ACGCTGGGCGCGGTTCCACGCGCAC--CCTCCCAGGCTGCTCCCCACTC----GCAC i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11958005 588 + 106825570 CTCATGCCTCTGCTCAGCCACACTCAC------------------TCCTGCATGCTCCTCCATACACAAGTACTT------------ACAACACACACTCTT-----------------------------------GTT-ACACACAGGA-----CATGCGCACTTGCATGCACACACACGGCTTGCATTCTCACTA------------------------ATGATTGTCCACACTTTCTCATTCGCACATTC----------------------ACACA---A----TCTCGTGCAGTTGCTCACCCTCACTC-CCCTTGCTTGCCTTCACTCACACCCACACCCATGTTCACACTCCCTTGTACA----------------------CT-TTGCACAGATGCTGTCTCAGGACACTCCCCCTCAC------------ATGCACGCAGGCGCGTTCACACATGTCACCCTCATGCACTCTTTCA--------------------------------------------------------------GTCACAACCACCTCCGCTGACACGCACACTCATTTCCATGCTCACGGACTCACATGCTTTCTTCTCTCATACGCTCAGGAGTGTGATATTTAAAGAATGGTTTCATCAG-CTCTTTTGCCTTTTTTGAAGTTCGAGTG--GTCTTTTGCGTCTTTTGAATGACGTATTTTCCTCACTAGCTCCT-CTGTCTCCCT-----GCTCGTCCTCTCTCCCTCCC---ACGCTGGGCGCGGTTCCACGCGCTC--CCTCCCAGGCTGCTCCCCACTC----GAAC i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37661648 588 + 132586672 CTCATGCCTCTGCTCAGCCACACTCAC------------------TCCTGCATGTTCCTCCATACACAAGTACTT------------ACAACACACACTCTT-----------------------------------GTT-ACACACAGGA-----CATGCGCACTTGCATGCACACACACAGCTTGCATTCTCACTA------------------------ATGATTGTCCACACTTTCTCATTCGCACATTC----------------------ACACA---A----TCTCGTGCAGTTGCTCACCCTCACTC-CCCTTGCTTGCCTTCACTCACACCCACACCCATGTTCACACTCCCTTGTACA----------------------CT-TTGCACAGATGCTGTCTCAGGACACTCCCCCTCAC------------ATGCACGCAGGCGCGTTCACACATGTCACCCTCATGCACTCTTTCA--------------------------------------------------------------GTCACAACCACCTCCGCTCACACGCACACTCATTTCCATGCTCACGGACTCACATGCTTTCTTCTCTCATACGCTCAGGAGTGTGATATTTAAAGAATGGTTTCATCAG-CTCTTTTGCCTTTTTTGAAGTTCGAGTG--GTCTTTTGCGTCTTTTGAATGACGTATTTTCCTCACTAGCTCCT-CTGTCTCCCT-----GCTCGTCCTCTCTCCCTCCC---ACGCTGGGCGCGGTTCCACGCGCTC--CCTCCCAGGCTGCTCCCCACTC----GCAC i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11318838 586 + 104110932 CTCATGCCTCTGCTCAGCCACACTCAC------------------TCCTGCATGCTCCTCCATACGCAAGTACTT------------acaacacacactctt-----------------------------------gtt-acacacagga-----catgcggacttgcatgcacacacacagcttGCATTCTCAC---------------------------TGATTGTCCACACTTTCTCATTCGCACATTC----------------------ACACA---A----TCTCGTGCAGTTGCTCACCCTCACTC-CCCTTGCTTGCCttcactcacacccacacccatGTTCACACTCCCTTGTACA----------------------CTCTTGCACAGATGCTGTCTCAGGACACTCCCCCTCAC------------ATGCACGCAGGCGCGTTCACACATGTCACCCTCATGCACTCTTTCA--------------------------------------------------------------GTCACAACCACCTCCGCTCACACGCACACTCATTTCCATGCTCACGGACTCACATGCTTTCTCCTCTCATACGCTCAGGAGTGTGATATTTAAAGAATGGTTTCATCAG-ctcttttgccttttttgaaGTTCGAGTG--GTCTTTTGCGTCTTTTGAATGACGTATTTTCCTCACTAGCTCCT-CTGTCTCCCT-----GCTcgtcctctctccctccc---acgcTGGGCGCGGTTCCACGCGCTC--CCTCCCAGGCTGCTCCCCACTC----GCAC i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34418898 589 + 128595539 CTCATGCCTCTGCTCAGCCACACTCAC------------------TCCTGCATGCTGCTCCATACACAAGTACTT------------ACAACACATACTCTT-----------------------------------GTT-ACACACAGGA-----CATGCGCACTTGCATGCACGCACACAGCTTGCATTctcac---------------------------taactgtccacactttctcactcacacattc----------------------acaca---atcactcTTGTGCAGTTGCTCAGCCTCACTC-CCCTTGCTTGCCTTCACTCACACCCACACCCGTGTTCACACTCCCTTGTACA----------------------CTCTGGCACAGATGCTGTCGCAGGACACGCCCCCTCAC------------ATGCACGCAGGCGCGTtcacacatgtcaccctcatgcactctttca--------------------------------------------------------------gtcacaaccacctccactcacacgcacactcaTTTCCATGCTCATGGACTCACATGCTTTCTCCTCTCATACGCTCAGGAGTGTGATATTTAAAGAAT-GTTTCATCAG-CTCTTTTGCCTTTTTTGAAGTTCGAGTG--GTCTTTTGCGTCTTTTGTATGACGTATTTTCCTCACTAGCTCCT-CTGTCTCCCT-----GCTCGTCCTCTCTCCCTCCC---ACGCTGGGCGCGGTTCCACGCGCTC--CCTCCCAGGCTGCTCCCCACTC----GCAC i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87902726 540 - 158406734 CTCATGCCTCTGCTCAGTCTCACTCAC------------------TCCTGCATGTGTCTCCACACATGAGCACTT------------ACA---------------------------------------------------ACACACAGGA-----CATGCACACTTGCAGGCACACACACAAC---------------------------------------TGATCGTCCACACTTCTTCACTGGCACATTC----------------------ACACACACAACACTCTCATGCAGTTGCTCACCCTCACTC-CCCTTGCTTGCCTTCACTCACACCCACACCCATATTCACACTCCCTTGTACA-----------------------TCTTGCACAGATGCTCTCTTGGGACACTCCCCC-CAC------------ACGAATGCAGGCATGTTCACACACACCACCCTTGTACACTCGTTCAC------------------------------------------------------------CCTCACACCCACCTCCGCTCACACGCACACACATTTCCATGCTCACCGACTCACAGGCTTTCTGCTCTCATACTCTCAGGAGTGTGATATTTAAAGAAC-GTTTTATCAG-CTCTTTTGCCTTTTCTGAAGTTTGAGTG--GTCTTTTGCGTCTTTTGAATGACGTATTTTCCTTACTAGTTCCTCTCATCTCCCC-----GCCCATCCGCTGTCCATCCC---ACGCTGGGCACAGTTCCACGGGC--------------------------------AC i calJac3.chr6 C 0 C 0 s mm10.chr2 49746182 799 + 182113224 CTCATACCTCTCCTCATACTTACAGACATGTAAGAGGCACAGAGGCCCGGTAAGCTCAGACCTATGCATGTACATTCAGCCCCAGCCACGGCTCACACTCTTACACTGCACTCTCATGGGCCCCACCCCACCCCACCGCTCACACACACCATCTCTCAAGGACACTTTCTCACACAAACACACCACATATACACACAGTGCTCTTTTTCTGACATATAATACATATTCTTTCACA-TTTCTCTCTCACACACTCTCCTTCCTATATACAACTCTTTAcaca---tactgtctcacacacacatacaatctcacacacattttcttttccacacactttctcacatacacgttatctctctcttacacatatgctttctctctctctctctcacacacacacacactttct-----cactttctcTCACTGAGATTCTTTTTCGCACATAGAATCTCTCACACACA-CAATCTCATACACTTTTTCACATTTACACCATAATGCGCGCTCTCTCTCTCCCCCCACCCTCTCTCCCTCTCCCCTACATACCCCACGTCTTTCCCCACTCACATCCTGACTTACTCATATTCTCACATACCTACC--CTTTCTTGTTCCTTTCCCT-GGGAGCTGGATGGATACAAGAC-CAGTAGGCAGCCCCCTTTGCTGTCTTAGGCTCTCGAGTGTAGCCTCTGTCACCTACTCAGT----TATTCTC----------CCT-CCATCCCTCCCACAAGCTCATTTCCTTATTTTCTCAGTAATCTGGCTGTGCCTGCACACACTCGTTCTCGCAGGCTGCCCCCCACTTACGGACAT i mm10.chr2 C 0 C 0 e canFam3.chr19 50660575 5 + 53741614 I a score=1309368.000000 s hg38.chr2_GL582966v2_alt 75027 377 + 96131 CCTCGCCCAGCCCA--TGCACGC--------GGACAGACACACTGGCTTCGTGGCACCCACATTCTCTCCCTCACTCTC----ACCACCCACACGCATCAAATGCACACTTTAAAAATCCAAGAGTGGAGCCCTGCAGTGTATGCCGTTTTAGACTCGGATGTTTTCACTCAGCCTTGGAATCCTCC----CCGAGCCGTAAATGTTCTTCAGAAATAGACGC--ACTGTCCTTGGCTGA-CTGTTCTGCC-----GCCCTCCTCAGCGCAGGGCCCGTTCTGCCTCCTGGAGTGTTTGGGTGAGGTG----------------GGCGGAGCATGGAGCCTGCTGGCCAGGGGGTGAATGCCCGGGAAGCCCGCTGCAGGAGACAGTGGTGGAAAAGGCCAACTGGCCGTCGGGGCATC s panTro4.chr2B 153187817 377 + 247518478 CCTCGCCCAGCCCA--TGCACGC--------GGACAGACACACTGGCTTCGTGGCACCCACATTCTCTCCCTCACTCTC----ACCACCCACACGCATCAAATGCACACTTTTAAAATCCAAGAGTGGAGCCCTGCAGTGTATGCCGTTTTAGACTCGGATGTTTTCACTCAGCCTTGGAATCCTCC----CCGAGCCGTAAATGTTCTTCAGAAATAGACGC--ACTGTCCTTGGCTGA-CTGTTCTGCC-----GCCCTCCTCAGCGCAGGGCCTGTTCTGCCTCCTGGAGTGTTTGGGTGGGGTG----------------GGTGGAGCATGGAGCCTGCTGGCCAGGGGGTGAATGCCTGGGAAGCCCGCTGCAGGAGACAGTGGTGGAAAAGGCCAACTGGCCATCGGGGCATC i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38394358 377 + 135000294 CCTCGCCCAGCCCG--TGCACGC--------GGACAGACACACTGGCTTCGTGGCACCCACATTCTCGCCCTCACTCTC----ACCACCCACACACATCAAATGCACACTTTTAAAATCCAAGAGTGGAGCCCTGCAGTGTATGCCGTTTTAGACTCGGATGTTTTCACTCAGCCTTGGAATCCTCC----CCGAGCCGTAAATGTTCTTCAGAAATAGACGC--GCTGTCCTTGGCTGA-CTGTTCTGCC-----GCCCTCGTCAGTGCAGGGCCTGTTCTGCCTCCTGGAGTGTTTGGGTGGGGTG----------------GGTGGAGCATGGAGCCTGCTGGCCAGGGGGTGAATGCCCGGGAAGCCTGCTGCAGGGGACAGTGGTGGAAAAGGCCAACTGGCCGTCGGGGCATC i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82347157 377 - 85365473 CCTCGCCCAGCCCA--TGCACGC--------GGACAGACACACTGGCTCCGTGGCACCCACATTCTCTCCCTCACTCTC----ACCACCCACACGCATCAAATGCACACTTTTAAAACCCAAGAGTGGAGCCCTGCAGTGTATGCCGTTTTAGACTCGGATGTTTTCACTCAGCCTTGGAATCCTCC----CCGAGCCGTAAATGTTCTTCAGAAATAGACGC--GCTGTCCTTGGCTGA-CTGTTCTGCC-----GCCCTCCTCAGCGCAGGGCCTGTTCTGCCTCCTGGAGTGTTTGGGTGGGATG----------------GGTGGAGCATGGAGCCTGCTGGCCAGGGGGTGAATGCCCGGGAAGCCCGCTGCAGGGGACAGTGGTGGAAAAGGCCAACTGGCCGTCGGGGCATC i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11958593 381 + 106825570 CCTCGCCCAGCCCG--TGCACGC--------GGACAGACCCACTGGCTTCATGGCACCCACATTCTCTCCCTCACTCTCACTTACCACCCACACGCATCGCATGCACGCTTTTAAAATCCAAGATTGGAGCCCTGCAGTGTATGCCGTTTTAGACTCGGATGTTTTCACTCAGCCTTGGAATTCTCC----CTGAGCCGTAAATGTTCTTCAGAAATAGACGC--GCTGTCCTTGGCTGA-CTGTTCTGCC-----GCTCTCCTCAGCGCAGGGCCTGTTCTGCCTCCTGGAGTGTTTGGGTGGGGTG----------------AGTGGGACATGGAGCCTGCTGACCAGGGGGTGAATGCCCGGGAAGCCCGCTGCAGGGCACAGTGGTGGAAAAGGCCGACTGGCCGTCGGGGCATC i rheMac3.chr12 C 0 I 170 s macFas5.chr12 37662236 381 + 132586672 CCTCGCCCAGCCCG--TGCACGC--------GGACAGACCCACTGGCTTCATGGCACCCACATTCTCTCCCTCACTCTCACTTACCACCCACACGCATCGCATGCACGCTTTTAAAATCCAAGATTGGAGCCCTGCAGTGTATGCCGTTTTAGACTCGGATGTTTTCACTCAGCCTTGGAATTCTCC----CTGAGCCGTAAATGTTCTTCAGAAATAGACGC--GCTGTCCTTGGCTGA-CTGTTCTGCC-----GCTCTCCTCAGCGCAGGGCCTGTTCTGCCTCCTGGAGTGTTTGGGTGGGGTG----------------AGTGGGACATGGAGCCTGCTGACCAGGGGGTGAATGCCCGGGAAGCCCGCTGCAGGGCACAGTGGTGGAAAAGGCCGACTGGCCGTCAGAGCATC i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11319424 381 + 104110932 CCTCGCCCAGCCCG--TGCACGC--------GGACAGACCCACTGGCTTCATGGCACCCACATTCTCTCCCTCACTCTCACTTACCACCCACACGCATCGCATGCACGCTTTTAAAATCCAAGATTGGAGCCCTGCAGTGTATGCCGTTTTAGACTCGGATGTTTTCACTCAGCCTTGGAATTCTCC----CTGAGCCGTAAATGTTCTTCAGAAATAGACGC--GCTGTCCTTGGCTGA-CTGTTCTGCC-----GCTCTCCTCAGCGCAGGGCCTGTTCTGCCTCCTGGAGTGTTTGGGTGGGGTG----------------AGTGGGACATGGAGCCTGCTGACCAGGGGGTGAATGCCCGGGAAGCCCGCTGCAGGGCACAGTAGTGGAAAAGGCCGACTGGCCGTCGGGGCATC i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34419487 381 + 128595539 CCTCGCCCAGCCCG--TGCACGC--------GGACAGACCCACTGGCTTCATGGCACCCACATTCTCTCCCTCACTCTCACTTACCACCCACATGCATCGCATGCACGCTTTTAAAATCCAAGATTGGAGCCCTGCAGTGTATGCTGTTTTAGACTCGGATGTTTTCACTCAGCCTTGGAATTCTCC----CTGAGCCGTAAATGTTCTTCAGAAATAGACGC--GCTGTCCTTGGCTGA-CTGTTCTGCC-----GCTCTCCTCAGCGCAGGGCCTGTTCTGCCTCCTGGAGTGTTTGGGTGGGGTG----------------GGTGGGGCATGGAGCCTGCTGACCAGGGGGTGAATGCCCGGGAAGCCCGCTGCAGGGCACAATGGTGGAAAAGGCCGACTGGCCGTCGGGGCATC i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87903266 380 - 158406734 CCTCGCCCTG-CTG--TGCACGT--------GGACAGACCCACTGGCTTCGTGGCACTCACATTCTCTCCCTCACTCTCACTTGCCACCCACACGCGTCGCATGCACACTTTTAAAATCCAAGATTGGAGCCCTGCACTGTATGCAATTTTAGACTCGGATGTTTTCACTCAGCCTTGGAATCCTCC----CCGAGCCGTAAATGTTCTTCAGAAATAGACGA--GCTGTCCTTGGCTGA-CTGTTCTGCC-----GCCCTCCTCGGCGCAGGGACTGTTCTGCCTCTGGGAGTGTTTGGGTGGGGTG----------------GGCAGGGCATGGAACCTGCTGGCCAGGGGGTGAATGCCTGGGAAGCCCGTTCCAGGGGACAGTGGTGGAAAAGGCCCACTGGCCGTCTGGGCATC i calJac3.chr6 C 0 I 1 s mm10.chr2 49746981 317 + 182113224 GCTCATCCACCCCC--CACACAA--------GGACAGAGCCACTGATGTGCTGGCTCC-----TCTTCCTGTCTCCCTCAGACACCCCCC-----------------------CAAATCCAGGACTAGATTGCTGCAGTGTGTGCTGCTTTAGACTTGAGCGTTTGCCCTCAGCCTTGGATTCCTCCCACGCTGAGCTGTAGATATTCTTCAGAGACAGGCTCTTGCTGTCCTTGGCTGT-CCATTCTGTTCTCAAGGCCTCCTGGGC---CAGCCTTCCCTGCCTCCTGA---GCACGGTGGGGAGG----------------AGTAGGAC---------GCTGCCCACAGACTGGAC-TCTGAGAACTGCACTCCAG----------------------ACTGGCCAT--------- i mm10.chr2 C 0 C 0 s canFam3.chr19 50660580 327 + 53741614 CCTGGCCCCTCCCACCTGCACACGCACCCAAGGACAGACCCACTGACACACTGGCTCC--CTTTCTCTCTCTTGCTCTCACTCACCACTCACACATCCTAG---------TTCAAACCCCCAGATGGGAACCCCACAGCATGTGTCCTTTT---------------------------------CAC----TGAAGATGTACGTGTTCTGTAGGAACAGGCTC--ACGGCCCTTGGCTGACCTGACCTGA------GCTCTCCGTAGCTCAAGGCCTCTTCTGGCTTCTGGAGTATCTGGGAGGGATGGGATGGGAGCAGGGGCGGTGGGATGTGGAAGCTGCCGTCCAGGGGTTGA---CGTTGGAAGAT--GTGCAGG---------------------------TGTCTTGG---- i canFam3.chr19 I 5 C 0 a score=988984.000000 s hg38.chr2_GL582966v2_alt 75404 303 + 96131 CCTGGCCC----CGGGCAGCTGACTGGCTGGAACAGGACACTGTCTGGGCTTTGGGGCGGGAGCCCTCCTCTGGGTGCGTTGATGAGACTTGTATT-CCCTCCTTGCTGGTCCCACCCTTGCTGTCCACTGTGACAGGAAGCTGAGCCTTGAGCTTTGGCATGGAGAGTCACAACCTGTGATGTGAAGAGGGACAT----GTGTG-----GGGAGGC-AGAGGGATGATAATGAATGTGATGGAGGAGAAAG------CATTGCCACAGGAGGCTGAATGATAGTTGCCTAAG--------CACAGTGTG--------------------------------------------CATAAATAAAAGGGACAAGTGA s panTro4.chr2B 153188194 303 + 247518478 CCTGGCCC----CGGGCGGCTGACTGGCTGGAACAGGACACTGTCTGGGCTTTGGGGCGGGAGCCCTCCTCTGGGTGCGTTGATGAGACTTGTATT-CCCTCCTTGCTGGTCCCACCCTTGCTGTCCACTGTGACAGGAAGCTGAGCCTTGAGCTTTGGCATGGAGAGTCGCAACCTGTGATGTGAAGAGGGACAT----GTGTG-----GGGAGGC-GGAGGGATGATAATGAATGTGATGGAGGAAAAAG------CATTGCCACAGGAGGCTGAATGACAGGTGCCTAAG--------CACAGTGTG--------------------------------------------CATAAATAAAAGGGACAAGTGA i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38394735 303 + 135000294 CCTGTCCC----CGGGCAGCTGACTGGCTGGAACAGGACACTGTCTGGGCTTTGGGGCAGGAGCCCTCCTCTGGGTGCGTTGATGAGACTTGTATT-CCCTCCTTGCTGGTCCCACCCTTGCTGTCCACTGTGACAGGAAGCTGAGCCTTGAGCTGTGGCATGGAGGGTCGCAACCTGTGATGTGAAGAGGGACAT----GTGTG-----GGGAGGC-GGAGGGATGATAATGAATGTGATGGAGGAAAAAG------CATTGCCACAGGAGGCTGAATGATAGTTGTCTAAG--------CACAGTGTG--------------------------------------------CATAAATAAAAGGGACAAGTGA i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82347534 307 - 85365473 CCTGGCCCGGGGCGGGCAGCTGACTGGCTGGAACAGGACACTGTCTGGGCTTTGGGGCGGGAGCCCTCCTCTGGGTGCGTTGATGAGACTTGTATT-CCCTCCTTGCTGGTCCCACCCTTGCTGTCCACTGTGACAGGAAGCTGAGCCTTGAGCTTTGGCATGGAGGGTCACAACCTGTGATGTGAAGAGGGACAT----GTGTG-----GGGAGGC-GGAGGGATGATAATGAATGTGATGGAGGAAAAAG------CATTGCCACAGGAGGCCGAATGATAGTTGCCTGAG--------CACAGTGTG--------------------------------------------CATCAATAAAAGGGACAAGTGA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11959144 298 + 106825570 CCTGGCCC----CGGGCAGCTGACTGGCTGGAACAGGACACTGTCTGGGCTTTGGGGTGGGAGCTCTCCTCTGGGTGCGTTGATGAGACTTATATT-CCCTCCTTGCTGGTCCCACCCTTGCTGTCCACTGTGACAGGAAGCTGAGCCTTGAGCTTTGGCATGGAGGGTAGCAACC-----TGTGAAGAGGGACAT----GTGTG-----GGGAGGT-GGAGGGGTGATAATGAACGTGATAGAGGAAGGAA------CACTGCCACAGGAGGCCGAATGATAGTTGCCTGAG--------CACAATGTG--------------------------------------------TGTAAATAAAAGGGACAAGTGA i rheMac3.chr12 I 170 C 0 s macFas5.chr12 37662617 298 + 132586672 CCTGGCCC----CGGGCAGCTGACTGGCTGGAACAGGACACTGTCTGGGCTTTGGGGTGGGAGCTCTCCTCTGGGTGCGTTGATGAGACTTATATT-CCCTCCTTGCTGGTCCCACCCTTGCTGTCCACTGTGACAGGAAGCTGAGCCTTGAGCTTTGGCATGGAGGGTAGCAACC-----TGTGAAGAGGGACAT----GTGTG-----GGGAGGT-GGAGGGGTGATAATGAACGTGATAGAGGAAGGAA------CACTGCCACAGGAGGCCGAATGATAGTTGCCTGAG--------CACAATGTG--------------------------------------------TGTAAATAAAAGGGACAAGTGA i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11319805 299 + 104110932 CCTGGCCC----CGGGCAGCTGACTGGCTGGAACAGGACACTGTCTGGGCTTTGGGGTGGGAGCTCTCCTCTGGGTGCGTTGATGAGACTTATATTCCCCTCCTTGCTGGTCCCACCCTTGCTGTCCACTGTGACAGGAAGCTGAGCCTTGAGCTTTGGCATGGAGGGTAGCAACC-----TGTGAAGAGGGACAt----gtgtg-----gggaggt-ggaggggtgATAATGAACGTGATAGAGGAAGGAA------CACTGCCACAGGAGGCCGAATGATAGTTGCCTGAG--------CACAATGTG--------------------------------------------CGTAAATAAAAGGGACAAgtga i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34419868 295 + 128595539 CCTGGCCC----CGGGCAGCTGACTGGCTGGAACAGGACACTGTCTGGGCTTTGGGGCGGGAGCTCTCCTCTGGGTGCGTTGATGAGACTTATATT-CCCTCCTTGCTGGTCCCACCCTTGCTGTCCACTGTGACAGGAAGCTGAGCCTTGAGCTTTGGCATGGAGGGTAGCAACC-----TGTGAAGAGGGACAT----GTGTG-----GGGAGGT-GGAGGGGTG---ATGAACGTGATAGAGGAAGGAA------CACTACCACAGGAGGCCGAATGATAGTTGCCTGAG--------CACAATGTG--------------------------------------------CATAAATAAAAGGGACAAGTGA i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87903647 308 - 158406734 CTGGGCCC----CGGGCAGCAGACTCGCTGGAACTGGACACTGCCTGGGCTTTGGGGCAGGAGCCCTTCTCTGGCTGCACTGATGGGATTTGTATT-CCCTCCTTGCTAGTCCTGCCCTTGCTGTCCACTGTGACAGGAAGCTGAGCCTTGAGCTTTGGCATGGAGGGTGGCAACCTGTGATGTGAACAGGAA-GT----GCATG-----GGGAGCC-GGAGGGATGATCATGAATGTGATGGAGGAAAAAAAAATATCATTGCCACAGGAGGCCGAATGATAGTTGCCTAAG--------CACAGTGTG--------------------------------------------CATAAATACAAAAGACAAGTGA i calJac3.chr6 I 1 I 1 s mm10.chr2 49747298 268 + 182113224 -------C----TATGCTGTTGTATGCTGATGGCAGGACACTGA--GCACTT------------CCTCCTCATCTCACCTCG-TGCCACACGGACT-GCCTCT---CAGGTGCTAGCCTCACTGTCCACCATGATAGGAAGTTTACCCTTGAGGTCCTGCATGGAAGTCAGTAGCGTCTT-GGTGGAAAGAGGCCT----GAGGGAAATTGGAGGTT-GTAGAAATAATTATGAATGTGATGGAGGGAAGGT------CATTGCTGCAGGGACCCAAGTGACAGCTGCTGAAG--------GACAGC----------------------------------------------------------AGCGTCAGCCA i mm10.chr2 C 0 C 0 s canFam3.chr19 50660907 337 + 53741614 ---GGCCC----AAGGCAGCCATCTCGCTTCAACGGGATCCT--TTGGGCTCTGGGGCTGGA-CTCTCCT---GCTGTGTTAATGGGCCTTGTGTT-TTCACCTCTCTGGTGTCCCCCTTGCTGTCCCCTGTGACAGGAAGCTGAGCCTTTA-------CACAGCGGGCAGCAGCC-----TGTGACAGGGAAGGTTTCAGGGCA-----GGGAGTCAGGTCGGCTGGAAATGATCTTG-TGCAGGAAGGTT------CATTGCTGCAGGAAGCCGA-CGGTAGCTGCCTGCGCTTAAACACGCAGCTTGCAAACTGTTTTAAAGGTGGtttttttttttttttttatgatagtcacagagagaaagagagagaga i canFam3.chr19 C 0 I 127 a score=2324433.000000 s hg38.chr2_GL582966v2_alt 75707 667 + 96131 TTTTAAATGATTTATACTACCCTTCCCAAACTGTTTATTGTTGAATCTCCCTAAAAACAAAC-AAAATGAGAGAAAGTTGCCAAACTCAGGACTCTA---TATTTAGTATTTACACCCC-AGGAGATGCCTGGGCCTTGGACAAAGAA-------------------CTGTTCTCATTCCCCTTTGGTGTGGTGG-TGTTTTTA--TG-AAAAATGTAAACTGTGATTACGGTTCAATCAGTAATGAAACCACTGACAAGAAACAGA------------------------GAGAGTGCATGC-AGGGTGGGC---GCAGGTGTTAAGGAGCAGGGTATCTGGGCTGAGCTCCCTCCGGCAG-GGCCTGGGACAGTGTG---TCTGTAACAGAGTGAGT-----GCTGCACCCCTGCCCCTGGGCTGGAAGGCAGCACAGCCTCAAACAGGTCCTGTGTGCACATTATTCATAATCACAGATCCATTTGGTTTCCTGCAGAAAGTAATTTACCTCATCCGAGGACACAATTGACTTCAGGTGCTTCTTATTTCAACACAGAA--------TTGGACCCAGTAATAAGACCTTAAATTAACAGAGAACCTTTATTGCAAGAAACTTAGTGTTTCCGTAGCTT--TATAGTCTG-TTTCTTCCTTTTAGATGTGAGCGTGTGTGAGTTGCATCCCTTGAAATTCTGTGTTAA-AG----TAGGTCAATTTAGACAA-------AGTTTGCATGCAGA- s panTro4.chr2B 153188497 685 + 247518478 TTTTAAATGATTTATACTACCCTTCCCAAACTGTTTATTGTTGAATCTCCCTAAAAACAAAC-AAAATGAGAGAAAGTTGCCAAACTCAGGACTCTA---TATTTAGTATTTACACCCC-AGGAGATGCCTGGGCCTTGGACAAAGAACTGTTCTCATTCCGT-CTTCTGTTCTCATTCCCCTTTGGTGTGGTGG-TGTTTTTA--TG-AAAAATGTAAACTGTGATTACGGTTCAATCAGTAATGAAACCACTGACAGGAAAGAGA------------------------GAGAGTGCATGC-AGGGTGGGC---GCAGGTGTTAAGGAGCAGGGTATCTGGGCTGAGCTCCCTCCGGCAG-GGCCTGGGACAGTGTG---TCTGTAACAGAGTGAGT-----GCTGCACCCCTGCCCCTGGGCTGGAAGGCGGCACAGCCTCAAACAGGTCCTGTGTGCACATTATTCATAATCACAGATCCATTTGGTTTCCTGCAGAAAGTAATTTACCTCATCCGAGGACACAATTGACTTCAGATGCTTCTTATTTCAACACAGAA--------TTGGACCCAGTAATAAGACCTTAAATTAACAGAGAACCTTTATTGCAAGAAACTTAGTGTTTCCGTAGCTT--TATAGTCTG-TTTCTTCCTTTTAGATGTGAGCGTGTGTGAGTTGCATCCCTTGAAATTCTGTGTTAA-AG----TAGGTCAATTTAGACAA-------AGTTTGCATGCAGA- i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38395038 687 + 135000294 TTTTAAATGATTTATACTACCCTTCCCAAACTGTTTATTGTTGAATCTCCCTAAAAACAAAC-AAAATGAGAGAAAGTTGCCAAACTCAGGACTCTA---TATTTAGTATTTACACCCC-AGGAGATGCCTGGCCCTTGGACAAAGAATTGTTCTCATTCCAT-CTTCTGTTCTCATTCCCCTTTGGTGTGGTGG-TGTTTTTA--TG-AAAAATGTAAACTGTGATTACAGTTCAATCAGTAATGAAACCACTGACAGGAA--AGA------------------------GAGAGCGCATGC-AGGGTGGGC---GCAGGTGTTAAGGAGCAGGGTATCCGGGCTGAGCTCCCTCCAGCAG-GGCCTGGGACAGTGTG---TCTGTAACACAGTGAGT-----GCTGCACCCCTGCCCCTGGGCTGGAAGGCGGCACAGCCTCAAACAGGTCCTGTGTGCACATTATTCATAATCACAGATCCATTTGGTTTCCTGCAGAAAGTAATTGACCTCATCAGAGGACACAATTGACTTCAGGTGCTTCTTATTTCAACACAGAA--------TTGGACCCAGTAATAAGACTTTAAATTAACAGAGAGCCTTTATTGCAAGAAACTTAGTGTTTCCGTAGCTT--TATAGTCTG-TTTCTTCCTTTTAGATGTGAGCGTGTGTGAGTTGCATCCCTTGAAATTCTGTGTTAA-AG----TGGGTCAATTTAGACAAAT---ACAGTTTGCATGCAGA- i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82347841 688 - 85365473 TTTTAAATGATTTATACTACCCTTCCCAAACTATTTATTGTTGAATCTCCCTAAAAACAAAC-AAAATGAGAGAAAGTTGCCAAACTCAGGACTCTA---TATTTAGTATTTACACCCC-AGGAGATGCCTGGCCCTTGGACAAAGCACTGTTCTCATTCCGT-CTTCTGTTCTCATTCCCCTTTGGTGTGGTGG-TGTTTTTA--TGAAAAAATGTAAACTGTGGTTACAGTTCAATCAGTAACGAAACCACTGACGGGAA--GGA------------------------GAGAGCGCACGC-AGGGCGGGC---GCAGATGTTACGGAGCGGGGTATCCGGGCTGAGCTCCCTCCCGCAA-GGCCTGGGACACTGTG---CCTGTAACATAGTGAGT-----GCTGCACCCCTGCCCCTGGGCTGGAAGGCGGCACAGCCTCAAACAGGTCCTGTGTGCACATTATTCATAATCACAGATCCATTTGGTTTCCTGCAGAAAGTAATTTACCTCATCCGAGGACACAATTGACTTCAGGTGCTTCTTATTTCAACACAGAA--------TTGGGCCCAGTGATAAGACCTTAAATTAACAGAGAGCCGTTACTGCAAAACACTCAGTGTTTCCGTAGCTT--TATAGTCTG-TTTCTTCCTTTTAGATGTGAGCGTGTGTGAGTTGCATCCCTCAAAATTCTGTGTTAA-AG----CAGGTCAATTTAGACAAAT---ACAGTTTGCATGCAGA- i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11959442 680 + 106825570 TTTTAAATGATTTA---TACCCTTCCCAAACTGTTTATTGTTCAATATCCCTAAAAACAAACAAAAATGAGAGAAAGTTCCCAACCTCAGGACTCTA---TATTTAGTATTTACACCCT-AGGAGAATCCTGGCCCTTGGACAAAGCACTGTTCTCATTCCGT-CCTCTGTTCCCATTCCCTTTTGGTGTGGTGG-TGGTTTTA--TG-AAAAATGTAAACTGTGATTACAGTTCAATCAGTAATGAAACCACTGATGGG----AGA------------------------GAGAGTGCATGC-AGGGTGGGC---GCAGGTGTTAAGGAGCAGGGTATCCAGGCTGCGCTCCCTCTGGCAG-GGCCTGGGACAATG-------TGTAACATAGAGAGT-----ACTGCACCCCTGCCCCTGGGCTGAAAGGCGGCACAGCCTCAGACAGGTCCTGTGTGCACATTATTCATAATCACAGATCCATTTGGTTTCCTGCAGAAAGTAATTTACCTCATCTGAGGACATAATTGACTTCAGGTGCTTCTTATTTCAACACAGAA--------TTGGACCCAGTAATAAGACCTTAAATTAACAGAGAACTTTTACTGCAAGAAACTTAGTGTTTGTATAGCTT--TATAGTATGTTTTTTTCCTTTTAGATGTGAGCGTGTGTGAGTTGCGTCCCTTGAAATTCTGTGTTAA-AG----TAGGTCAATTTAGACAAAT---AAAGTTTGCATGCAGA- i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37662915 683 + 132586672 TTTTAAATGATTTATACTACCCTTCCCAAACTGTTTATTGTTCAATATCCCTAAAAACAAACAAAAATGAGAGAAAGTTCCCAACCTCAGGACTCTA---TATTTAGTATTTACACCCT-AGGAGAATCCTGGCCCTTGGACAAAGCACTGTTCTCATTCCGT-CCTCTGTTCCCATTCCCTTTTGGTGTGGTGG-TGGTTTTA--TG-AAAAATGTAAACTGTGATTACAGTTCAATCAGTAATGAAACCACTGATGGG----AGA------------------------GAGAGTGCATGC-AGGGTGGGC---GCAGGTGTTAAGGAGCAGGGTATCCAGGCTGCGCTCCCTCTGGCAG-GGCCTGGGACAATG-------TGTAACATAGAGAGT-----ACTGCACCCCTGCCCCTGGGCTGAAAGGCGGCACAGCCTCAGACAGGTCCTGTGTGCACATTATTCATAATCACAGATCCATTTGGTTTCCTGCAGAAAGTAATTTACCTCATCTGAGGACATAATTGACTTCAGGTGCTTCTTATTTCAACACAGAA--------TTGGACCCAGTAATAAGACCTTAAATTAACAGAGAACTTTTACTGCAAGAAACTTAGTGTTTGTATAGCTT--TATAGTATGTTTTTTTCCTTTTAGATGTGAGCGTGTGTGAGTTGCGTCCCTTGAAATTCTGTGTTAA-AG----TAGGTCAATTTAGACAAAT---AAAGTTTGCATGCAGA- i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11320104 683 + 104110932 ttttaaatgatttatactACCCTTCCCAAACTGTTTATTGTTCAATCtccctaaaaacaaacaaaaatgagagaaAGTTCCCAACCTCAGGACTCTA---TATTTAGTATTTACACCCT-AGGAGAATCCTGGCCCTTGGACAAAGCACTGTTCTCATTCCGT-CCTCTGTTCCCATTCCCTTTTGGTGTGGTGG-TGgtttta--tg-aaaaatgtaaacTGTGATTACAGTTCAATCAGTAATGAAACCACTGATGGC----AGA------------------------GAGAGTGCATGC-AGGGTGGGC---GCAGGTGTTAAGGAGCAGGGTATCCAGGCTGAGCTCCCTCTGGCAG-GGCCTGGGACAATG-------TGTAACATAGAGAGT-----ACTGCACCCCTGCCCCTGGGCTGAAAGGCGGCACAGCCTCAGACAGGTCCTGTGTGCACATTATTCATAATCACAGATCCATTTGGTTTCCTGCAGAAAGTAATTTACCTCATCTGAGGACATAATTGACTTCAGGTGCTTCTTATTTCAACACAGAA--------TTGGACCCAGTAATAAGACCTTAAATTAACAGAGAACTTTTACTGCAAGAAACTTAGTGTTTGTATAGCTT--TATagtatgtttttttccttttagatgtGAGCGTGTGTGAGTTGCGTCCCTTGAAATTCTGTGTTAA-AG----TAGGTCAATTTAGACAAAT---AAAGTTTGCATGCAGA- i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34420163 686 + 128595539 TTTTAAATGATTTATACTACCCTTCCCAAACTGTTTATTGTTCAATCTCCCTAAAAACAAACAAAAATGAGAGAAAGTTCCCAACCTCAGGACTCTA---TATTTAGTATTTACACCCC-AGGAGATGCCTGGCCCTTGGACAAAGCACTGTTCTCATTCCGT-CCTCTGTTCCCTTTCCGTTTTGGTGTGGTGG-TGGTTTTA--TG-AAAAATGTAAAGTGTGATTACAGTTCAATCAGTAATGAAACCACTGATGGG----AGA------------------------GACAGTGCATGC-AGGGCGGGC---GCAGGTGTTAAGGAGCAGGGTATCCAGGCTGAGCTCCCTCTGGCAG-GGCCTGGGACAATG-------TGTAACATAGAGAGT-----ACTGCACCCCTGCCCCTGGGCTGAAAGGCGGCACAGCCTCAGACAGGTCCTGTGTGCACATTATTCATAATCACAGATCCATTTGGTTTCCTGCAGAAAGTAATTTACCTCATCTGAGGACACAATTGACTTCAGGTGCTTCTTATTTCAACACAGAA--------TTGGACCCAGTAATAAGACCTTAAATTAACAGAGAACTTTTATTGCAAGAAGCTTAGTGTTTGTATAGCTT--TATAGTATGTTTTTTTCCTTTTAGATGTGAGCGTGTGTGAGTTGCGTCCCTTGAAATTCTGTGTTAA-AG----TAGGTCAATTTAGACAAATAAAAAAGTTTGCATGCAGA- i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87903956 716 - 158406734 TTTTAAATGTTTTGTACTACCCTTCCCAAACTGTTTATCATTGAATCCACCTAAAAACAGACAACAGTGAGAGAAAGTTGCCAAACTCAGGACTCTA---TATCTGGTATTTATTCTCC-AGGAAATGCCTGGCCCTTGGACAGAGCACTGTTTTCATTCTGT-CTTCTGTTCTCATTCCCCTTTGGTGTGGTGG-TGTTTTCA--TG-CAAAATGTGAACTGTGATTACAGTTCAATCAGTAATAAAACCACTGACGAG----AGAGTGAGAGTGAGAGCAAGAGAGCATGAGAGAGCATGC-AGGGTGGGCGCAGCAGGTGTTAAGAAACAGGGTATCTGGGCTAAGCTCCCTCTGGCAG-GGCCTGGGACAGTGTG---TCTGCAAAATAGTGAGT-----GCTGCACCCCTGCCCCTGGGTTGGAAGGTGGCACAGCTTCAGACAGGTCCTATGTGCACATTATTCATAATCACAGATCCATTTGGTTTCCTGCAGAAAGTAATTTACCTCATCCGAAGACACAACTGACGTCAAGTCCTTCTTATTTCAACATGGAA--------TTGGACCCAATAATAAGACCTTAAAT----AGAGAAGCTTTATTGCAAGAAACTTAGTGTTTCCATAGCTT--TATGCTCTG-TTTCCTCCTTTTGGATGTGAGCAAGGGTGAGTTGCATCCCTTGAAATTCTGTGTTAG-AGCTCCTTTATAAGTTTAGACAAATAGAAAAGTTTGCATGCAGA- i calJac3.chr6 I 1 I 319 s mm10.chr2 49747566 612 + 182113224 CCTTAAATGTGTTG-ACTGCTCCTGCCAAACGGTTA---------------------------AAGATGAGAGGAAGGAGCCGA-CGTAGGACTCT----CAGGTTGCATTTGTGTCCCAAGGCAAGGCCTGGCTTGTGGTCAGGCC-----------------------TTCTTGCCTCCCTTTTGCATGGTGG-TGCTTTTCATCA-GAAAATATCAACTGTGATCACAGGGTGGGCAGAAGTAAGAGATCTGA-GGT----GGA------------------------GGGACAGCATGC-AGGGCATTT---GTGAACATTAAG-----GGGTGCTAGGACTGAGCTCCCTCTGGCAGAGGTGTGGGGCAGGCTGGATCCTGGAGCACTGA---------CCTGCAGCCTTGGTCCT-TGCTGTGAGGCGGCTCACTCACAGACGAG-ACTGTGTGCACATTAGTCATAAGACCAGGCCTGCTTGGCCTCCTGCAGAAACCAATTTACCCCAGCCAAGGATGCAATTGACTTCAGGTGCTTCTCATTTCAGCACAGAA--------TTGGATCTGGTAATAAGGTCTTAAATTAACAGAGAACC-TTATTCCAAGGAACTTAGTGTTTCTTTAACTC--TGGGTCCTG-TTTCAACCTTTTTAATTTAAGCCTGTGTAATTTTCATCCCCTGACAT-----------------CAGGTCGATTTATACAGAT-GAAAACATTGAA------- i mm10.chr2 C 0 C 0 s canFam3.chr19 50661371 654 + 53741614 TTTTAAAGGTTTTTAACCACCTCTCCTGAACTGTT-------GAATTCACCTGAGAACAAACACAAATGAGATAAAGCTGCCAAGCTCAGGACTCCATAGTATGTGGTACTTAGGCCCC-GA----------------GGACAAGGGAC----------CTGTGCTTCTCTTCTCCTTTCCCTCTGGTGTGGTGGCTTTTTTTA--TG-GAAAATGTCTACTGTGGTTACAGTTCAATCAGGAATAAAATCCCTGAAGCA----GGA------------------------GAGAGAAAGTGCGAGAACATGC--------------AGAGCCGGGGATGGGGGCCGCGAT-CCTTGGGCAG-GGACCTAGACGGCACG---TCCGCCTACGTGTGAGCGCTGAGCTGCAGCCCTGCACCTGCCCTGGAAGGTGGCTAAGCCCCGGACAGGTACCGTGTGCACTGGACCCGCAGTAACAGG-CCGGTTGCCTTCCTGCAGAAAGTCCATTGCCTCATCCGAGGAAGCAGTTGACTTTAGCTGCTTCTTATTTCAACACAGGATTGCAGACTTGGACCTGGCGACAAGACGTTAAATTAACGTAGAGCTTTTATTCCAAGAAACTCCGTGTTTTCATGGCTGTATATAGCCTG-TTTCCTTTTCCTA----CGAGCACCTGGGAGCTGCATCCCGTGACATTCTGTATTAAGAG----TTGGTCAACTTAGACAAATTGAGAAGT--------AGAA i canFam3.chr19 I 127 C 0 a score=194390.000000 s hg38.chr2_GL582966v2_alt 76374 51 + 96131 ATTTAGCTCTCTCCTCTTCCTCTATAGGAAAATATTTTGCAAGGAACTGAT s panTro4.chr2B 153189182 51 + 247518478 ATTTAGCTCTCTCCTCTTCCTCTATAGGAAAATATTTTGCAAGGAACTGAT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38395725 51 + 135000294 ATTTAGCTCTCTCCTCTTCCTCTATAGGAAAATATTTTGCAAGGAACTGAT i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82348529 51 - 85365473 GTTTAGCTCTCTCCTCTTCCTCTATGGGAAAATATTTTGCAAGGAACTGAT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11960122 51 + 106825570 ATTTAGCTCTCTCCTCTTCCTCTATAGGAAAATATTTTACAAGGAACTAAT i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37663598 51 + 132586672 ATTTAGCTCTCTCCTCTTCCTCTATAGGAAAATATTTTACAAGGAACTAAT i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11320787 51 + 104110932 ATTtagctctctcctcttcctctataggaaaatattttacaaggAACTAAT i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34420849 51 + 128595539 ATTTAGCTCTCTCCTCTTCCTCTATAGGAAAATATTTTACAAGGAACTAAT i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87904991 51 - 158406734 ATTTAGCTCTCTCCTCTTCCTTTTTGGGAAAATATGTTGCAAGAAACTCAT i calJac3.chr6 I 319 C 0 s mm10.chr2 49748178 51 + 182113224 GATTCTCTGTCTCCTCCTCACTTATAAGGAAATAATTTACATGAAACTAAT i mm10.chr2 C 0 I 249 s canFam3.chr19 50662025 51 + 53741614 ATGCAAGTTTATCTCTCTCCTTTGTGGGAAAACGACTTGCGGGAAACTAAC i canFam3.chr19 C 0 C 0 a score=31726.000000 s hg38.chr2_GL582966v2_alt 76425 13 + 96131 CATATTTCCTATG s panTro4.chr2B 153189233 13 + 247518478 CATATTTCCTATG i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38395776 13 + 135000294 CATATTTCCTATA i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82348580 13 - 85365473 CATATTTCCTATA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11960173 13 + 106825570 CACATCTCCTATA i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37663649 13 + 132586672 CACATCTCCTATA i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11320838 13 + 104110932 CACATCTCCTATA i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34420900 13 + 128595539 CATATCTCCTATA i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87905042 13 - 158406734 CATATCTCCTATA i calJac3.chr6 C 0 C 0 s canFam3.chr19 50662076 4 + 53741614 --------CGAC- i canFam3.chr19 C 0 C 0 e mm10.chr2 49748229 249 + 182113224 I a score=2423588.000000 s hg38.chr2_GL582966v2_alt 76438 725 + 96131 GTAAATACATGGAGACTTGAGCAGACAGAAATGTTT-GATCTTCTGATCTTGTTAACAAAGATCACCAGATTTGGCTCAGGCTCTTGTCTCAGTAATCTAAT--TCCTAAGGTTTCATTTGTAG-AAAATAATCCAAAATGAAGGGAAAA-AATGCCCCCAAG------ATGACAGTGAAAGTTTTAACAACAACA--------ATAAAAGGAAGCAATACAATCCTAATGAAAAAATGGCTTTTATGTTATGAAATA---TGCATCAATAAATTCatactag-tcatctttattgggcacttaatatgtgccagaaaatgttctaagaacattataaggttcatctcatttgatcttgacagcaatgataaggcaaccactgtttttattctcatgttaccaataagaaaactgaggcacagaaaggttagataacttgcccagggccacccagGAGGAAAGTCCATGAAATGCCTCATCCGTAAGCTCAGTGACTTAAAACAAGCAAGTGTGTGGACTTGCGTCTGAAGCAGGTGTGGAGACAGGAAAAATGTGAGTCAGTTACG--GTGAGATATTGTGGCTAACTTTTCATTTCAGCTTGTTGGTATTACATTGTAACATTTACATAAT----------AAAAAAAAGAAAAAAGGAATTCACCCTGATACAACATAGCCCAGTA-GGAATTTTTGTGAGGAAACC-TTT-----GAATTTTTGTGGGTGAGGAAA-------------------------------TGTGTGGTTCCACTGTG-----A-------------------------------------GCAGATGGG s panTro4.chr2B 153189246 719 + 247518478 GTAAATACATGGAGACTTGAGCAGACAGAAATATTT-GATCTTCTGATCTTGTTAACAAAGATCACCAGATTTGGCTCAGGCTCTTGTCTCAGTAATCTAAT--TCCTAAGGTTTCATTTGTAG-AAAATAATCCAAAATGAAGGGAAAA-AATGCCCCCAAG------ATTACAGTGAAAGTTTT------AACA--------ATAAAAGGAAGCAATACAATCCTAATGAAAAAATGGCTTTTATGTTATGAAATA---TGCATCAATAAATTCatactag-tcatctttattgggcacttaatatgtgccagaaaatgttctaagaacattataaggttcatctcatttaatcttgacagcaatgataaggcaaccactgtttttattctcatgttaccaataagaaaactgaggcacagaaaggttagataacttgcccagggccacccagGAGGAAAGTCCATGAAATGCCTCATCCGTAAGCTCAGTGACTTAAAACAAGCAAGTGTGTGGACTTGCGTCTGAAGCAGGTGTGGAGACATGAAAAATGTGAGTCAGTTACG--GTGAGATATTGTGGCTAACTTTTCATTTAAGCTTGTTGGAATTACATTGTAACATTTACATAAT----------AAAAAAAAGAAAAAAGGAATTCACCCTGATACAACATAGCCCAGTA-GGAATTTTTGTGAGGAAACC-TTT-----GAATTTTTGTGGGTGAGGAAA-------------------------------TGTGTGGTTCCACTGTG-----A-------------------------------------GGAGATGGG i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38395789 727 + 135000294 GTAAATACATGGAGACTCGAACAGACAGAAATATTT-GATCTTCTGATCTTGTTAACAAAAATCACCAGATTTGGCTCAGGCTCTTGTCTCAGTAATCTAAT--TCCTAAGGTTTCATTTGTAG-AAAATAATCCAAAATGAAGGGAAAA-AATGCCCCCAAG------ATTACAGTGAAAGTTTTAACAACAACA--------ATAAAAGGAAGCAATACAATCCTAATGAAAAAATGGCTTTTATGATATGAAATA---TGCATCAGTAAATTCatactag-tcatctttattgggcacttaatatgtgccagaaaatgttctaagaacattataaggttcatctcatttaatcttgaccgcaatgatgaggcaaccattgttttcattctcatgttaccaataagaaaactgaggcacagaaaggttagataacttgcccagggtcacccagGAGGAAAGTCCATGAAATGCCTCATCCGTAAGCTCAGTGACGTAAAACAAGCAAGCGTGTGGACTTGCGCCTGAAGCGGGTGTGGAGACATGAAAAATGTGAGTCAGTTACG--GTGAGATATTGTGGCTAACTTTTCATTTAAGCTTGTTGGTATTACATTGTAACATTTACGTAAT--------CAAAAAAAAAGAAAAAAGTAATTCATCCTGATACAACATAGCCCAGTG-GGAATTTTTGTGAGGAAACC-TTT-----GCATTTTTGTGGATGAGGAAA-------------------------------TGTGTGGTTCCACTGTG-----C-------------------------------------GCAGATGGG i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82348593 724 - 85365473 GTAAATACATGGAGACTTGAACAGACAGAAATATTT-GATCTTCTGATCTTGTTAACAAAGATTACCAGATTTGGCTCAGGCTCTTGTCTCAGTAATCTAAT--TCCTAAGGTTTCATTTGTAG-AAAATAATCCAAAATGACGGGAAAA-AATGCCCCCAAG------ATTACAGTGAAAGTTTTAACAACAACA--------ATAAAAGGAAGCAATACAATCCTAATGAAAAAATGGCTTTTATGGTATGAAATA---TGCACCAATAAATTCatactag-tcatctttattgggcacttaatatgtgccagaaaatgttctaagaacattataaggttcatctcatttaatcttgacagcaatgatgaggcaaccactgtttttattctcatgttaccaataagaaaactgaggcacagaaaggttagataacttgcccagggccacccagGAGGAAAGTCCATGAAATGCCTCATCTGTAAGCTCAGTGATGTAAAACAAGCAAGCGTGTGGACTTGCGCCCGAAGCAGGTGTGGAGACATGAAAAATGTGAGTCAGTTACT--GTGAGATATTGTGGCTAATTTTTCATTTAAGCTTGTTGGTATTACACTGTAACATTTATGTAAT-----------AAAAAAAGAAAAAAGGAATTCATCCTGATACAACATAGCCCAGTA-GGAATTTTTGTGAGGAAACC-TTT-----GAATTTCTGTGGGTGAGGGAA-------------------------------CGTGTGGTTCCACGGTG-----A-------------------------------------GCAGGTGGG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11960186 730 + 106825570 GTAAACACATGGAGACTTGAACAGACAGAAACATTT-GATCTTCTGATCTTGTTAACAAAGATCACCAGATCTGGCTCAGGCTCTTGTCTCAGCAATCTAAT--TCCTAAGGTTTCATTTGTAG-AAAGTAATCCAAAATGAAGGGGAAA-AATGTCCCCAAG------ATTACAGTGAAAGTTTTAACAACAACA--------ATAAAAGGAAGCAATACAAGCCTAATGAAGAAATGGCTTTTATGATATGAAATA---TGCATCAATAAATTCatactag-tcacgtttattgggcactgaatatgtaccagaaaatgttctcagaacattataaggttcatctcatttaatcttgacagcaatgatgaggcaactactgtttttattgtcatgttagcaataagaaaacggaggcacagaaaggttagataacttgcccagggccacccagGAGGAAAGTCCACGAAATGCCTCATCCATAAGCTCAGTGATGTAAAGCAAACAAGTGTGTGGACTTGCGCCTGAAGCAGGTGTGGAGACGTGAAAAATGTGAATCAGTTACG--GTGAGATATTGTGGCTAACTTTTCACTTAAGCTTGTTGGTATTACATTGTAACATTTATGTAATAA------AAAGAAAAAAGAAAAAAGGAATTCATCCTGATACAACGTAGCCCAGTA-GGAATTTTTGTGAGGAAACCTTTT-----GAATTTTTGTGGGTGAGGAAA-------------------------------TGTGTGGTTCCACTGTG-----A-------------------------------------ACAGATGAG i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37663662 730 + 132586672 GTAAACACATGGAGACTTGAACAGACAGAAACATTT-GATCTTCTGATCTTGTTAACAAAGATCACCAGATCTGGCTCAGGCTCTTGTCTCAGCAATCTAAT--TCCTAAGGTTTCATTTGTAG-AAAGTAATCCAAAATGAAGGGGAAA-AATGTCCCCAAG------ATTACAGTGAAAGTTTTAACAACAACA--------ATAAAAGGAAGCAATACAAGCCTAATGAAGAAATGGCTTTTATGATATGAAATA---TGCATCAATAAATTCatactag-tcacgtttattgggcactgaatatgtaccagaaaatgttctcagaacattataaggttcatctcatttaatcttgacagcaatgatgaggcaactactgtttttattgtcatgttagcaataagaaaacggaggcacagaaaggttagataacttgcccagggccacccagGAGGAAAGTCCACGAAATGCCTCATCCATAAGCTCAGTGATGTAAAGCAAACAAGTGTGTGGACTTGCGCCTGAAGCAGGTGTGGAGACGTGAAAAATGTGAATCAGTTACG--GTGAGATATTGTGGCTAACTTTTCACTTAAGCTTGTTGGTATTACATTGTAACATTTATGTAATAA------AAAGAAAAAAGAAAAAAGGAATTCATCCTGATACAACGTAGCCCAGTA-GGAATTTTTGTGAGGAAACCTTTT-----GAATTTTTGTGGGTGAGGAAA-------------------------------TGTGTGGTTCCACTGTG-----A-------------------------------------ACAGATGAG i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11320851 730 + 104110932 GTAAACACATGGAGACTTGAACAGACAGAAACATTT-GATCTTCTGATCTTGTTAACAAAGATCACCAGATCTGGCTCAGGCTCTTGTCTCAGCAATCTAAT--TACTAAGGTTTCATTTGTAG-AAAGTAATccaaaatgaaggggaaa-aatgtCCCCAAG------ATTACAGTGAAAgttttaacaacaaca--------ataaaaggaaGCAATACAAGCCTAATGAAGAAATGGCTTTTATGATATGAAATA---TGCATCAATAAATTCATACTAG-TCACGTTTATTGGGCACTGAATATGTACCAGAAAATGTTCTCAGAACATTATAAggttcatctcatttaatcttgacAGCAATGATGAGGCAACTACTGTTTTTATTGTCATGTTAGCAATAAGAAAAcggaggcacagaaaggttagaTAACTTGCCCAGGGCCACCCAGGAGGAAAGTCCACGAAATGCCTCATCCATAAGCTCAGTGATGTAAAGCAAACAAGCGTGTGGACTTGCGCCTGAAGCAGGTGTGGAGACGTGAAAAATGTGAATCAGTTACG--GTGAGATATTGTGGCTAACTTTTCATTTAAGCTTGTTGGTATTACATTGTaacatttatgtaataa------aaagaaaaaagaaaaaaggaattcatCCTGATACAACGTAGCCCAGTA-GGAATTTTTGTGAGGAAACCTTTT-----GAATTTTTGGGGGTGAGGAAA-------------------------------TGTGTGGTTCCACTGTG-----A-------------------------------------ACAGATGAG i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34420913 723 + 128595539 GTAAACACATGAAGACTTGAACAGACAGAAATATTT-GATCTTCTGATCTTGTTAACAAAGATCACCAGATCTGGCTCAGGCTCTTGTCTCAGCAATCTAAT--TCCTAAGGTTTCATTTGTAG-AAAGTAATCCAAAATGAAGGGGAAA-AATGTCCCCAAG------ATTACAGTGAAAGTTTTAACAACAACA--------ATAAAAGGAAGCAATACAAGCCTAATGAAGAAATGGCTTTTATGATATGAAATA---TGCATCAATAAATTCatactag-tcacgtttattgggcactgaatatgtaccagaaaattttctcagaacattataaggttcatctcatttaatcttgacagcaatgatgaggcaactactgtttttattgtcgtgttagcaataagaaaacggaggcacagaaaggttagataacttgcccagggccacccagGAGGAAAGTCCACGGAATGCCCCATCCATAAGCTCAGTGATGTAAAGCAAACAAGCGTGTGGACTTGCGCCTGAAGCAGGTGTGGAGACGTGAAAAATGTGAATCAGTTACA--GTGAGATATTGTGGCTAACTTTTCATTTAAGCTTGTTGGTATTACATTGTAACATTTATGTAAT-------------AAAAAGAAAAAAGGAATTCATCCTGATACAACGTAGCCCAATA-GGAATTTTTGTGAGGAAACCTTTT-----GAATTTTTGTGGGTGAGGAAA-------------------------------TGTGTGGTTCCACTGTG-----A-------------------------------------ACAGATGAG i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87905055 716 - 158406734 GTAAATACATGGAGACTTGAACCGAAGGAAATATTT-GATCTTCTGATCTTGTTAACAAAGGTCACCAGATTTGGCTCAGGCTCTTGTCTCAGTAATCTAAT--TCCTAAAGGTTCATTTGTAG-AAAATAATCCAAAATGAAGGAGAAA-AATGCCCCCAAGAAGTTAAATACAGTGAAAGTTTTAACAACAACA--------ATAAAAGGAAGCACTACAAGCTTAATG---AAATGGCTTTTATGATAGGTAATA---TGCATCAATAAATTCATGCCAG-TCATGtttactgagcacttaatatgtgccaggaagtgttctaagagcatgataaggttcatctcattt------------aatgatgaggtaaccactgtttttattctcatgttaccaataagaaaactgaggcacagaaaggtgagctagctcgcccacggccacccagGAGGAGAGTCTGCAAAATGCTTCGTCTGTAAGCTCAGTCCTGTAAAGCAAACAAGCGTATGGACTTGCACCTGAAGCCTGTGAGGAAACATGAAAAATGCCAGTCTGTTAGG--GTGAGATATCGTGGCTAACTTTTCATGTAAGCTTATTAGTATTGCATTGTGACATTTATGTAAT---------------AAAGAAAAAAGGAATCTATTCTCATACAACATGGCCCAGTA-GGAATTTTTTAGAGGAAACC-TTT-----GGATTTTTGTGGGTAAGGCAA-------------------------------TGTATGGTTCCCTTGTGAGTACA-------------------------------------GCAGATCAG i calJac3.chr6 C 0 C 0 s mm10.chr2 49748478 602 + 182113224 gtatgtatACAAAGACTTGAATAGAAGGAAACATTTAGATCTTCTGGTTTTGTTACCAAAGAGCAGCAGGTTTGGTTCAGGCGCTTGTCTCCTCACTCATATAGTCATAGAAGTTCATTCATAG-AAAATAATCCAAAATGAAGGAGGAA-------------------GTTGCAGT---------------------------------------------------------TGCCGGCTCTTGGGATGTG------------------AGCTCATATTAG-Ccat-tgcactgaccacttaccgag-gccagaaattgtcctaagag-attctagg--tcttcctgtttagtct---cagtgccagtgagtcaa--attctctttatcttcatctcaaaaatgaaaaa----aggcacaggaa-gttccaggacttgcccagcgcca-ccaggtggagagtCTGGGAACTGC-TCATCCCTGAG-TTGCTGATGT-GAGCAAACATACTTGTGGACTGG-GGCAGTGGTGGGTGAAGAATCATGGGAAGTCCCAGCCAGTGCAG--ATCA---ATCATGGCTACCTTTGGTTTT--GCACGCTGGTATGA-AGTGTAATATTTATATAGGGAGTAAACCAAACCAAACCAAAAGGAGAGCCTATTCTGGC---AGGTAACTTCCTA-GGAATGTTT-------------------------------------------------------------------------GTCTGGCTCCATTGAGAGCAGA-------------------------------------ATAGAGGAG i mm10.chr2 I 249 C 0 s canFam3.chr19 50662080 801 + 53741614 GTAAATGCGTGGAGACTTGAACGGGAGGAACTGTTTTGGTTTTCTCGTCTTGTTAACAGAGCTCATCAGGTTTGACTCAGAGTCTTGTCTTTGTGGTCTAAT--TCCTAAGGGTTCATTTGTAGAAAAATAGCTCAGAATGAAAAAAAAAAAAAGCCCCCGAGAAGCTAATTACAAT----------ACGACAATATCGTGCCCACAAAGGGGAACAACAAAAGCCAACCGAAGAAATGGC--------CATCAAATAAGGTGCATCAATAAGTTAAGCCtagctgatgttcactgagcacatagcgtgtgccaggagctgttgtaagagttgtgtgaggatttttacatttaatcttgacaacaaccgtgaggcaactggtgtatttatcctcctgttacgaataaggaaactgaggcacaggaaggtttggtaggttgcccaggattgcatgggtgcaagggccaccacctgcctcacccaggAGCTCAGTGATGGAAAGCAAAGGCG---ATGACCCCGGGCCAGAGGGGGGTGCAGAGACCTGAAACACGTCGGCCTGCCAGGCTGGGAGAGGTTGTGGGTAACGTCCCAC-TAAACTTGATGGGGTTGTTGTGTAACATGTACGTAAT----------AAATTACAGGGAAAAAGAATCCATTCTGGTACAACACAGCCAGCTAGGGAATTTCCATGAGAGACCTTGTTAACCGGAGTAGTTGAGAGTGAAAAAGTTCTGTTTAGAACGCCACTGACGggggcacctgggtggctcagccgtg-----aagggtgcgccttggggccccggtcgtgatcccagagtgcgggtcgg i canFam3.chr19 C 0 I 123 a score=3461112.000000 s hg38.chr2_GL582966v2_alt 77163 998 + 96131 CAGGCTTTGTT-CTGGTTTACAATTTGTGGTCTGGGTTCTCAGG-CTCTGCACCTCAAGGTGCTCCAGTAATGACACTAGGTCCAGGGGTGGGCATGGTCAGGGTGGGGGTGTCACAGGGAA-GGGGGTGCACCAGCGGCGTCCATGGCAG----------GCTTGGGAAGTGTC-------------GGG------------------GGAATG--ATCTGGTGCCAAATGTGTCATAAATTCAGTGAAT-TGCTGCACTTAAGTGGCC---T-TTAAAAA---TCTCTTCCAGTCTAGAGAATTGCAGACACTGCACAACCTTCGGAAACTCTTTGTCCAGGATCTGACCACCCGAGTTAAAAAAGTGAGTTCTC-----TTTGTCTGAATGGGACTGAG-AAGAAAATCAAAGATGG---CAGGGAAGAATCATTTTCAGTTGAAATATCACTTGCTTAAGTCGGGGCTGGTTATGCTTAAAAATTAATTACTGCACACCAG-AGAATGTTATTAAAAGAATGTGCTGGAGGC------------AAAAAATACTTGGTAACATTTTCCCATCTGATTTTTCCTTCTTGGTAAAAGGAAGTCAGAATACTTTCT----CTGGCC-TTCATTTCAAATGAACGCATA-TTTTTCTGGCCCCCACTGTGTGAGGGCAACTGCTCTTGACAC---AGAAACATTTAGAGCA------------GTCATTTCAGAA---AGCATTGC------CCAGAAGCCTGGAGAAGTCGGACAGAGAGAGCCTCTTATTTGTTTGTTAAAAGGCCATT-AGGGGCTAGGTCAGagtttataaagcacgtcaa--catccagtattttatttgcttttcccagcaaccatgtaagtggtgcttagtgttcctgtttctgcagatgtggagataggctcagatgttaaataacttacccaatattgcactggtggga-------------------agagccagagataggtctggaacccaggcctgcggggtctctggatc---tgagcttcttccaTCCTCGTGCTACAGCAGCAGTCTGGAGACACTCCATAATGGTGACTCCCCCAAACAGCT-------------------TGCAGAGG-------------TTTAAGGAAGGA s panTro4.chr2B 153189965 998 + 247518478 CAGGCTTTGTT-CTAGTTTACAATTTGTGGTCTGGGTTCTCAGG-CTCTGCACCTCAAGGTGCTCCAGTAATGACACTAGGTCCACAGGTGGGCATGGTCAGGGTGGGGGTGTCACAGGGAA-GGGGGTGCACCAGCGGCGTCCATGGCAG----------GCTTGGGAAGTGTC-------------GGG------------------GGAATG--ATCTGGTGCCAAATGTGTCATAAATTCAGTGAAT-TGCTGCACTTAAGTGGCC---T-TTAAAAA---TCTCTTCCAGTCTAGAGAATTGCAGACACTGCACAACCTTCGGAAACTCTTTGTCCAGGATCTGACCACCCGAGTTAAAAAAGTGAGTTCTC-----TTTGTCTGAATGGGACTGAG-AAGAAAATCAAAGATGG---CAGGGAAGAATCATTTTCAGTTGAAATATCACTTGCTTAAGTCGGGGCTGGTTATGCTTAAAAATTAATTACTTCACACCAG-AGAATGTTATTAAAAGAATGTGCTGGAGGC------------AAAAAATACTTGGTAACATTTTCCCATCTGATTTTTCCTTCTTGGTAAAAGGAAGTCAGAATACTTTCT----CTGGCC-CTCATTTCAAATGAACGCATA-GTTTTCTGGCCCCCACTGTGTGAGGGCGACAGCTCTTGACAC---AGAAACATTTAGAGCA------------GTCATTTCAGAA---AGCATTGC------CCAGAAACCTGGAGAAGTCGGACTGAGAGAGCCTCTTATTTGTTTGTTAAAAGGCCATT-AGGGGCTAGGTCAGagtttataaagcacgtcaa--catccagtattttatttgcttttcccagcaaccatgtaagtggtgcttagtgttcctgtttttgcagatgtggagataggctcagatgttaaataacttacccaatattgcactggtggga-------------------agagccagagataggtctggaacccaggcctgcggggtctctggatc---tgagcttcttccaTCCTCGTGCTACAGCAGCAGTCTGGAGACACTCCGTAATGGTGACTCCCCCAAACAGCT-------------------TGCAGAGG-------------TTTAAGGAAGGA i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38396516 1017 + 135000294 CAGGCTTTGTT-CTAGTTTACAATTTGTGGTCTGGGTTCTCAGG-CTGTGCACCTCAAGGTGCTCCAGTAATGACACTAGGTCCAGGGGTGGGCATGGTCAGGGTGGGGGTGTCACAGGGAA-GGGGGTGCACCAGCAGCGTCCATGGCAG----------GCTTGGGAAGTGTC------------TGGG------------------GGAATG--ATCTGGTGCCAAATGTGCCATAAATTCAGTGAAT-TGCTACACTTAAGTGGCC---T-TTAAAAA---TCTCTTCCAGTCTAGAGAATTGCAGACACTGCACAACCTTCGGAAACTCTTTGTCCAGGATCTGACCACCCGAGTTAAAAAAGTGAGTTCTG-----TTTGTCTGAATGGGACTGAG-AAGAAAATCAAAGATGG---CAGGGAAGAATCATTTTCAGTTGAAATATCACTTGCTTAAGTCGGGGATGGTTATGCTTAAAAATTAATTACTTCACACCAG-AGAATGTTATTAAAAGAATGTGCTGGAGGC------------AAAAAATACTTGGTAACATTTTCCCATCTGATTTTTCCTTCTTGGTAAAAGGAAGTCAGAATGCTTTCT----CTGGCC-TTCATTTCAAATGAACGCATA-TTTTTCTGGCCCCCACTGTGTGAGGGCGACTGCTCTTGACAC---AGAAACTTTTAGAGCA------------GTCATTTCAGAA---AGCATTGC------TCGGAAGCCTGGAGAAGTCGGACCGAGAGAGCCTCTTATTTGTTTGTTAAAAGGCCATT-AGGGGCTAGGTCGGagtttatgaagcatgtcaa--catccagtattttatttgcttttcccagcaaccatgtaagtggtgcttagcgttcctgtttttgc-gacgtagagataggctcagatgttaaataacttacccagtattgcactggtgggaagagccagagataggtctgagagccagAGATAGGTCTGGAACCCAGGCCTGTGGGGTCTCTGGATC---TGAGCTTCTTCCATCCTCGTGCTACACCAGCAGTCTGGAGACACTCCGTAATGGTGACTCCCCCAAACAGCT-------------------TGCAGAGG-------------TTTAAGGGAGGA i ponAbe2.chr2b C 0 I 103 s nomLeu3.chr20 82349317 998 - 85365473 CAGGCTTTGTT-CTAGTTTACAGTTTGTGGTCTGAGTTCTCAGG-TTCTGCACCTCAAGGTGCTCCAGTAATGACACTAGGTCCAGGGGTCAGCATGGTCAGGGTGGGGGTGTCACAGGGAA-GGGGGTGCACCAGCGGCGTCCATGGCAG----------GCTTGGGAAGTGTC------------TGGG------------------GGAATG--ATCTGGTGCCAAATGTGCCATAAATTCAGTGAAT-TGCTACACTTAAGTGGCC---T-TTAAAAA---TCTCTTCCAGTCTAGAGAATTGCAGACACTGCACAACCTTCGGAAACTCTTTGTCCAGGATCTGACCACCCGAGTTAAAAAAGTGAGTTCTC-----TTTGTCTGAATGGGACTGAG-AAGAAAATCAAAGATGG---CAGGGAAGAATCATTTTCAGTTGAAATATCACTTGCTTAAGTCAGGGCTGGTTATGCTTAAAAATTAATTACTTCACACCAG-AGAATGTTATTAAAAGAATGTGCTGGAGGC------------AAAAAATACTTGGTAACATTTTCCCATCTGATTTTTCCTTCTTAGTAAAAGGAAGTCAGAATGCTTTCT----CTGGCC-TTCATTTCAAAGGAACGCATA-TTTTTCTGGCCCCCACTGTGTGAGGGCGACTGCTCTTGACAC---AGAAACATTTAGAGCA------------GCCATTTCCGAA---AGCGTTGC------CCAGAAGCCTGGAGAAGTCGGACCGAGAGAGCCTCTTATTTGTTTGTTAAAAGGCCATT--GGGGCTAGGTCAGagtttatgaagcacgtcaa--catccagtattttatttgcttttcccagcaaccatgtaagtggtgcttagtgttcctgtttttgcagatgtggagacaggctcagatgttaaataacttacccaatattgcactgatagga-------------------agagccagagataggtctggaacccaggcctgctgggtctctggatc---tgagcttcttccaccctcatgctacaccggcagTCTGCAGACACTCCGTAGTGGTGACTCCCCCAAACAGGT-------------------TGCAGAGG-------------TTTAGGAAAGGA i nomLeu3.chr20 C 0 I 103 s rheMac3.chr12 11960916 1002 + 106825570 CAGGCTTTGTT-CTAGTTTACAATTTGTGGTTTGGGTTCTCAGG-CTCTGCACCTCAAGGTGCTCCAGTAACGACACTAGGTCCAGCAGTGGGCATGGTCAGGGTGGGGGTGTCACAGGGAAGGGGGGCGCACCAGCGGCATCCATGGCTG----------GCTCGGGAAGTGTC------------TCGG------------------GGAATG--ATCTGGTGCCAAATGTGCCATAAATTCAGTGAAT-TGCTACATTTAAGTGACC---T-TTAAAAATCTTCTCTTCCAGTCTAGAGAGTTGCAGACACTGCACAACCTTCGGAAACTCTTTGTCCAGGATCTGACCACCCGAGTTAAAAAAGTGAGTTCTCT----TTTGTCTGAATGGGACTGAG-AAGAAAATCAAAGATGG---CAGAGAAGAATCATTTTCAGTTGAAATACCACTTGCTTAAGTCGGAGCTGGTTATGCTTAAAAATTAATTACTTCACACCAG-AGAATGTTATTAAAAGAATGTGCTGGAGGC------------AAAAAATACTTGGTAACATTTTCCCATCTGATTTTTCCTTCTTAGTAAAAGGAAGTCAGAATGCTTTCC----CTGGCC-TTCATTTCAAATCAACACATA-TTTTTCTGGCCCCCACTGTGTGAGGGCGACTGCTCTTGACAC---AGAAACATTTAGAGTA------------GTCGCTTCAGAA---AGCATTGC------CCGGAAGCCTGGAGAGGCTGGACCGAGAGAGCCTCTTATTTGtttgttaagaggccatt-aggggctaggttagagtttatgaagcacgtcaa--catccagta-tttatttgcttttcccagcaaccatgtaagtggtgcttagtgttcctgtttttgcgaatgtggagataggctcagatgttaaataacttaccca-tattgcactggtggga-------------------agagccagagatggatctggaacccaggcctccGGGGTCTCTGGATC---TGAGCTTCTTCTGTCCTCTTGCTACACCAGCAATCTGGAGACACTCTGTAATGGTGACTCACCCAAACAGCT-------------------TGCAGAGG-------------TTTAAGGAAGGA i rheMac3.chr12 C 0 I 101 s macFas5.chr12 37664392 1002 + 132586672 CAGGCTTTGTT-CTAGTTTACAATTTGTGGTTTGGGTTCTCAGG-CTCTGCACCTCAAGGTGCTCCAGTAACGACACTAGGTCCAGCAGTGGGCATGGTCAGGGTGGGGGTGTCACAGGGAAGGGGGGCGCACCAGCGGCATCCATGGCTG----------GCTCGGGAAGTGTC------------TCGG------------------GGAATG--ATCTGGTGCCAAATGTGCCATAAATTCAGTGAAT-TGCTACATTTAAGTGACC---T-TTAAAAATCTTCTCTTCCAGTCTAGAGAGTTGCAGACACTGCACAACCTTCGGAAACTCTTTGTCCAGGATCTGACCACCCGAGTTAAAAAAGTGAGTTCTCT----TTTGTCTGAATGGGACTGAG-AAGAAAATCAAAGATGG---CAGGGAAGAATCATTTTCAGTTGAAATACCACTTGCTTAAGTCGGAGCTGGTTATGCTTAAAAATTAATTACTTCACACCAG-AGAATGTTATTAAAAGAATGTGCTGGAGGC------------AAAAAATACTTGGTAACATTTTCCCATCTGATTTTTCCTTCTTAGTAAAAGGAAGTCAGAATGCTTTCC----CTGGCC-TTCATTTCAAATCAACACATA-TTTTTCTGGCCCCCACTGTGTGAGGGCGACTGCTCTTGACAC---AGAAACATTTAGAGTA------------GTCGCTTCAGAA---AGCATTGC------CCGGAAGCCTGGAGAGGCTGGACCGAGAGAGCCTCTTATTTGTTTGTTAAGAGGCCATT-AGGGGCTAGGttagagtttatgaagcacgtcaa--catccagta-tttatttgcttttcccagcaaccatgtaagtggtgcttagtgttcctgtttttgcgaatgtggagataggctcagatgttaaataacttaccca-tattgcactggtggga-------------------agagccagagatgggtctggaacccaggcctccggggtctctggatc---tgagcttcttctgtccTCTTGCTACACCAGCAATCTGGAGACACTCTGTAATGGTGACTCACCCAAACAGCT-------------------TGCAGAGG-------------TTTAAGGAAGGA i macFas5.chr12 C 0 I 101 s papAnu2.chr12 11321581 1002 + 104110932 CAGGCTTTGTT-CTAGTTTACAATTTGTGGTTTGGGTTCTCAGG-CTCTGCACCTCAAGGTGCTCCAGTAACGACACTAGGTCCAGCAGTGGGCATGGTCAGGGTGGGGGTGTCACAGGGAAGGGGGGCGCACCAGCGGCATCCATGGCTG----------GCTCGGGAAGTGTC------------TCGG------------------GGAATG--ATCTGGTGCCAAATGTGCCATAAATTCAGTGAAT-TGCTACATTTAAGTGACC---T-TTAAAAATCTTCTCTTCCAGTCTAGAGAGTTGCAGACACTGCACAACCTTCGGAAACTCTTTGTCCAGGATCTGACCACCCGAGTTAAAAAAGTGAGTTCTCT----TTTGTCTGAATGGGACTGAG-AAGAAAATCAAAGATGG---CAGGGAAGAATCATTTTCAGTTGAAATACCACTTGCTTAAGTCGGAGCTGGTTATgcttaaaaattaattacttcACACCAG-AGAATGTTATTAAAAGAATGTGCTGGAGGC------------AAAAAATACTTGGTAACATTTTCCCATCTGATTTTTCCTTCTTAGTAAAAGGAAGTCAGAATGCTTTCC----CTGGCC-TTCATTTCAAATGAACACATA-TTTTTCTGGCCCCCACTGTGTGAGGGCGACTGCTCTTGACAC---AGAAACATTTAGAGTA------------GTCGCTTCAGAA---AGCATTGC------CCGGAAGCCTGGAGAGGCTGGACCGAGAGAGCCTCTTATTTGTTTGTTAAGAGGCCATT-AGGGGCTAGGTTAGAGTTTATGAAGCACGTCAG--CATCCagta-tttatttgcttttcccaGCAACCATGTAAGTGGTGCTTAGTGTTCCTGTTTTTGCAAATGTGGAGATAGGCTCAGATGTTAAATAACTTACCCA-TATTGCACTGGTGGGA-------------------AGAGCCAGAGATGGGTCTGGAACCCAGGCCTGCGGGATCTCTGGATC---TGAGCTTCTTCTGTCCTCTTGCTACACCAGCAATCTGGAGACACTCTGCAATGGTGACTCACCCAAACAGCT-------------------TGCAGAGG-------------TTTAAGGAAGGA i papAnu2.chr12 C 0 I 101 s chlSab2.chr10 34421636 1001 + 128595539 CAGGCTTTGTT-CTAGTTTACAATTTGTGGTTTGGGTTCTCAGG-CTGTGCACCTCAAGGTGCTCCAGTAATGACACTAGGTCCAGCAGTGGGCATGGTCAGGGTGGGGGTGTCACAGGGAA-GGGGGCGCACCAGCGGCATCCATGGCTG----------GCTCGGGAAGTGTC------------TCAG------------------GGAATG--ATCTGGTGCCAAATGTGCCATAAATTCAGTGAAT-TGCTACATTTAAGTGACC---T-TTAAAAATCTTCTCTTCCAGTCTAGAGAGTTGCAGACACTGCACAACCTTCGGAAACTCTTTGTCCAGGATCTGACCACCCGAGTTAAAAAAGTGAGTTCTCT----TTTGTCTGAATGGGACTGAG-AAGAAAATCAAAGATGG---CAGGGAAGAATCATTTTCAGTTGAAATACCACTTGCTTAAGTCGGAGCTGGTTATGCTTAAAAATTAATTACTTCACACCAG-AGAATGTTATTAAAAGAATGTGCTGGAGGC------------AAAAAATACTTGGTAACATTTTCCCATCTGATTTTTCCTTCTTAGTAAAAGGAAGTCAGAATGCTTTCC----CTGGCC-TTCATTTCAAATGAACACATA-TTTTTCTGGCCCCCACTGTGTGAGGGCGACTGCTCTTGACAC---AGAAACATTTAGAGCA------------GTCGCTTCAGAA---AGCATTGC------CCGGAAGCCTGGAGAGGCTGGACCAAGAGAGCCTCTTATTTGtttgttaagaggccatt-aggggctaggttagagtttgtgaagcacgtcaa--catccagta-tttatttgcttttcccagcaaccatgtaagtggtgcttagtgttcctgtttttgcaaatgtggagacaggctcagatgttaaataacttaccca-tattgcactggtggga-------------------agagccagagatgggtctggaacccaggcctgTGGGGTCTCTGGATC---TGAGCTGCTTCTGTCCTCTTGCTACACCAGCAATCTGGAGACGCTCTGTAATGGTGACTCACCCAAACAGCT-------------------TGCAGAGG-------------TTTAAGGAAGGA i chlSab2.chr10 C 0 I 101 s calJac3.chr6 87905771 1005 - 158406734 CAGAGTTTGTTACCAGTTTACAATTTGTGGTCTGGGTTCTCAGG-CTCTGCATTTCAAGGTGCTCCAGTAACAACTCTGGGTCCAGGGGTGGGCATGGT----AGGGGGGCATCACAGGAAA-GGGGGTGCACCAGCAGCATCCGTGGCGG----------GCTTGGGAAGTGTCCATGCAGGAGTCTGGG------------------GAAATT--ATCTGGTGCCCGGTGTGCTTTCAATTCTGTGAAT-TTCTACACTGAAGTGGCC---T-TTAAAAATCTTCTCTTCCAGTCTCGAGAATTGCAGACGCTTCACAACCTTCGGAAACTCTTTGTCCAGGATCTGACCACCCGAGTTAAAAAAGTGAGTTCTCT----TTTGTCTGAATGGGACTGAG-AAGAAAATCAAAGGTGG---CCGGGAAGAATTGTTTTCAGCAGAAATATCACTTGCTTAAGTCAGGGCTGGTTATGCTTAAAAATTAATTACTTCACACCAG-AGAATGTTATTAAAAGAATGTGCTGGAGGC------------AAAACATACTTGGGAACATTTTCCCATCTGATTTTTCCTTCTTAGTAAAAGGAAGTCAGAATGCTTTCC----CTGGCG-TTCGTTTCAAATGAACACATATTTTTTCTGGCCCCCAGTGTGTGAGGGCAACTGCTCTTGATGC---AGAAACATTTAGAGCA------------GTCTTTTCAGAA---AGCATTGC------CCGGAAGCCTGGAGAAGTTGGACCAAGAGAGCCTCTTACTTGtttgttaagaggccatt-aggggccaggtcagagtttatgaagcacttcaa--catccaatattttatttgcttttcccagcaattatgtaagtggtgcttagtgttcctgtttttgcagatgtggagttaggctcagatgttaaataacttacccaatattgcactggtggga-------------------agagccagagatgggtctggaaccca--------ggGTCTCTAGATC---TGAGCCTTTTCGGTCCTCGTGCTACACCCGCAATCTGGAGACACTCTACGATGGTGACTCCCCCGGGCAGCT-------------------TGCAGAGG-------------TTTAAGGAAGGA i calJac3.chr6 C 0 I 79 s mm10.chr2 49749080 943 + 182113224 CTGGCTGTGTT-CTGGCTTACAGCTGGTAGTCAGAGTTCCCCGGTTTCTGCACC-----GTGC---------------AAGCTGAAGAGTGGGCAAGGCACAGAT---GGTACCACG------------GCAGCAACAGTATCAATGGCAGCTGCAGCATCACCGGGGCAGGGGG------------GAGG------------------GTAACGACATCTCGAG-CAAACGCAGCAGCAGTTCAGTCCGT-CACCCCAC-----TGACCATGT-GCAAAAA---TCTCTTCCAGTCTAGAGAACTCCAGACCCTTCATAACCTGCGCAAACTCTTCGTCCAGGATTTGACAACCCGGGTGAAAAAGGTGAGTCCTGTCTGCTATTTCTGAACAAG-TTGAG-GAGA-----AAAGTTGGAGCCCATGAAGCATCATCTTTGGTTGAAATATCCCTTGCTTACATTAAGGCTGGTTTTGCTTAAAAATTAATTGCCTCATGCCAGAAAAACCTTATTAAAAGAATGTGTTTCTGGC------------TAAAATCACTTCAGAATATTTTACCATCTGA-ATTCCCTTCTTAGCAAAAGGAAGTTATAATGCTATCCCTGGCTGGCC-TTTATTTAAAATG-ACATATA-TTTTTCTGG-CCCCACTGTGTGAAAATCACTGCTTTGGGC-C---AGAAAAGTCC--GGCA------------TTCTTTTCAGAAGACAACATGGT------TCCCTAGTGTACAGAAGAGAGATGGACAGAGACTCAGGTTTGTCTATGCAGTG-----T-GTGGGGTGCGTTAG----TATTGAGAACTCCAGACCCTTCAGAA-TGAACTTG-TTTTCCTAGCCACCAC---AGTAGGTTCTGGCATCCCTGCAT-TGCAGCTGTGGATCTAGGCTTGGGTGT----------------GATTGCGGGGCTGAAA-------------------AGGCTTGGGCATAAGTCTGCAA-------------GGTCTCCGAATCACGTGATCT-----------------------------CAGAGAGTCTCCAGATTGCTGACTCAATAGCTCAGCTCAGAACTGAGAAGAGTGAATGCAGAAGAGACACGGGCAGCTTAAAGGAAGGA i mm10.chr2 C 0 C 0 s canFam3.chr19 50663004 952 + 53741614 TAGGCTCTGTT-CTCGTTTACAGTTCAGGGTTTGCGTTCCCAGT-CCCTGCCCCTCAGGGCACCT----------------TCGAGGGGTGGACAC-------GTgggggcgcggcggggcc--tgggcgc-----tgggcccccgggcAG----------G--TGGGAGTGGTC------------TGGGTCATCAGGGCAGCCGCACGGGGCG--GTCCGGGGCCCGATCGGTCCCTAATTCAAGGTGTCTCCCCCGCTCCAGTGGCG---TCTTAACCATCTTCTCTTCCAGTCTCGGGAACTGCAGACTCTGCATAACCTCCGGAAACTCTTCGTCCAGGACCTGACTGCCCGGGTTAAAAAGGTGAGTTCCGT----TTTGTGTGAACAGGACTGAGAAAGAAAAGAAAAGACAG---ACAGAAAGAATCATTTTCAGTTGAAAGGCTACGTGCTCAAATTGGCGCTGGTTGTGGTTAAAAATTAATTACTTCGTGCCAG-AAAATG-TATTAAAAGAATGTACTGGAGGCAAAAAAAAGAAAAAAAAATACTTGGGGATATTTTTCCATCTGCTTTTCTCCTT----------------------CTCTCC----CTGGCCTTTCATTTCAAATGAGCACATA-CCTGTCTGG---CCGCAGCGTGAAAGCTGCCGTGCGTGATGCGGGGGAAACCCAGGGGGTGTCGCCAGGCAGTGTCGCCCCGGAG---CGTGCTGCGCGGCGCCAGAAACCCGGAGAAATCGAGGCGGGAGGCCCC---GTTTGCCTGTGAACAGGCCGTTCAGGGACGGGGTCCGAGTAGGCGAAGCACGTGGA--CACGCGTCG---TGTTCGCTCCTCCTGGCAACC---------GCGTTCAG--GTTCTGTTCTCTC-TTGGTGGGGGGAGGCTCGGAGGCCCAGTAACTTGACCGAGGTCACAC--GCTGGA-------------------AGAGCTGGGGGT----------------CCTGC--GACTTCCGAACC---CGGGC----------CTCACACCGTGATCTCGGGCGGGGGGGGGGCCG-GGTAGCGAATC-CCAGAGCAGCT-------------------TGCAGAAG-------------TTTCAGGAAGGA i canFam3.chr19 I 123 C 0 a score=958958.000000 s hg38.chr2_GL582966v2_alt 78161 323 + 96131 GT---------------------------CTGTTTAAGAAAAgtgggtgcat-------------------atgtgtgtaaatgtgtgtgcatatttgagtgtgtgtacgtgtgtgt------gtgaatgtgtgtcagtgtgAAGGAGCCAAGGG-AAAGAGGTCAAATGTCTTACAAA-----------------GATAGAGTCGGGTCTGAGAGGGAGAGGGTTAATAGTGTAGATGGATGTATTAGATAGGCTTGCTAAGGAGGA--GGGACACAAATTCCTAGAAGGGAGGAGTGGAGAAGTCAAGTTGGAAGGATCGGCAGGGAAATACATGCGGGTGGAAAGAAGTCACATTTGATGACTTGGGTCTTCTTGGTTTATGTGAAGGCTCA s panTro4.chr2B 153190963 324 + 247518478 GT---------------------------CTGTTTAAGAAAAgtgggtgcat-------------------atgtgtgtaaatgtgtgtgcatatttgagtgtgtgtacgtatgtgt------gtgaatgtgtgtCAGTGTGAAGGAGCCAAGGGAAAAGAGGTCAAATGTCTTACAAA-----------------GATAGAGTCGGGTCTGAGAGGGAGAGGGTTAATAGTGTAGATGGATGTATTAGATAGGCTTGGTAAGGAGGA--GGGACACAAATTCCTAGAAGGGAGGAGTGGAGAAGTCAAGTTGGAAGGATCGGCAGGGAAATACATGTGGGTGGAAAGAAGTCACATTTGATGACTTGGGTCTTCTTGGTTTATGTGAAGGCTCA i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38397636 323 + 135000294 GT---------------------------CTGTTTAAGAAAAgtgtgtgcat-------------------atgtgtgtaaatgtgtgtgcatatttgagtgtgtgtacatgagtgt------gtgaatgtgtgtCAGTGTGAAGGAGCCAAGGG-AAAGAGGTCAAATGTCTTACAAA-----------------GATAGAGTCAGGTCTGAGAGGGAGAGGGTTAATAGTGTAGATGGATGTATTAGATAGGCTTGGTAAGGAGAG--GGGACACAAATTCCTAGAAGGGAGGAGTGGAGAAGTCAAGTTGGAAGGATCGACAGGGAAATACATGCGGGTGGAAGGAAGTCACATTTGATGACTTGGGTCTTCTTGGTTTATGTGGAGGCTCA i ponAbe2.chr2b I 103 C 0 s nomLeu3.chr20 82350418 321 - 85365473 GT---------------------------CTGTTTAAGAAAAgtgtgtgcat-------------------atgtgtgtaaatgtgtgtgcatatttgagtgtgtgtatgtgtgtgt------gtgAA--TGCATCAGTGTGAAAGAGCCAAGGG-AAAGAGGTCAAATGTCTTACAAA-----------------GATAGAGTTGGGTCTGAGAGGGAGAGGGCTAATAGTGTAGACGGATGTATTAGATAGGGTTGGTAAGGAGAA--GGGACACAAATTCCTCAAAAGGAGGAGTGGAGAAGTCAAGTTGGAAGGATCGGCAGGGAAATACATGCGGGTGGAAAGAAGTCACATTTGATGACTTGGGTCTTCTTGGTTTATGTGGAGGCTCA i nomLeu3.chr20 I 103 C 0 s rheMac3.chr12 11962019 309 + 106825570 GT---------------------------CTGTTTAAGAAAAgtgtgtgcat-------------------gtatgtgtgaatgtgtgtgcatatttga--------------atgt------gtgaatgtgtgtcagtgtgAAGGAGCCAAGGG-AAAGAGGTCAAATGCCTTATAAA-----------------GATAGAGTCGGGTCTGAGAGGGAGAGGATTAATAGTGTAGATGGATGTATTAGCTAGTCTTGGTAAGGAGAA--GGGACACACATTCCTAAAGGGGAGGAGTGGAGAAGTCAAGTTGGAAGGATTGGCAGGGAAATACATGAGGGTGGAAAGAAGCCACATTTGATGATTTGGGTCTTCTTGGTTTATGTGTAGGCTCA i rheMac3.chr12 I 101 C 0 s macFas5.chr12 37665495 309 + 132586672 GT---------------------------CTGTTTAAGAAAAgtgtgtgcat-------------------gtatgtgtgaatgtgtgtgcatatttga--------------atgt------gtgaatgtgtgtcagtgtgAAGGAGCCAAGGG-AAAGAGGTCAAATGCCTTATAAA-----------------GATAGAGTCGGGTCTGAGAGGGAGAGGATTAATAGTGTAGATGGATGTATTAGCTAGTCTTGGTAAGGAGAA--GGGACACACATTCCTAAAGGGGAGGAGTGGAGAAGTCAAGTTGGAAGGATCGGCAGGGAAATACATGAGGATGGAAAGAAGCCACATTTGATGATTTGGGTCTTCTTGGTTTATGTGTAGGCTCA i macFas5.chr12 I 101 C 0 s papAnu2.chr12 11322684 309 + 104110932 GT---------------------------CTGTTTAAGaaaagtgtgtgcat-------------------gtgtgtatgaatgtgtgtgcatatttga--------------atgt------gtgaatgtgtgtcagtgtgaaGGAGCCAAGGG-AAAGAGGTCAAATGCCTTATAAA-----------------GATAGAGTCGGGTCTGAGAGGGAGAGGATTAATAGTGTAGATGGATGTATTAGCTAGTCTTGGTAAGGAGAA--GGGACACACATTCCTAAAGGGGAGGTGTGGAGAAGTCAAGTTGGAAGGATCGGCAGGGAAATACATGAGGGTGGAAAGAAGCCACATTTGATGATTTGGGTCTTCTTGGTTTATGTGTAGGCTCA i papAnu2.chr12 I 101 C 0 s chlSab2.chr10 34422738 309 + 128595539 GT---------------------------CTGTTTAAGAAAAgtgtgtgcat-------------------gtgtgtatgaatgtgtgtgcatatttga--------------atgt------gtgaatgtgtgtcagtgtgAAGGAGCCAAGGG-AAAGAGGTCAAATGCCTTATAAA-----------------GATAGGGTCGGGTCTGAGAGGGAGAGGATTAATAGTGTAGATGGATGTATTAGCTAGTCTTGGTAAGGAGAA--GGGACACACATTCCTAAAGGGGAGGAGTGGAGAAGTCAAGTTGGAAGGATCGGCGGGGAAATACATGAGGGTGGAAAGAAGCCACATTTGATGATTTGGGTCTTCTTGGTTTATGTGTAGGCTCA i chlSab2.chr10 I 101 I 201 s calJac3.chr6 87906855 320 - 158406734 GTAGAGGGACAGTAGGATTGAAGGAAGGACTGTTTAAGAAAAGTGTGTGCAT-------------------ATGTGTGCAAAT------------------------------ATGT------GTGAA--TGTATCAGTGTGAAGGAGCCAAGGG-AAAGAGGTCAAATGTCTTACCAA-----------------GATGGAGTCGGGTCTAAGAAGGAGAGGGTTAATAGGGTAGATGGATGGATTCAGTAGGCTTGGTAGGGAGAGATGGGACACAAATTCCTAGAGGGAAGGAGGGGAGAAGTCAAGTTGGAAGGATAGGTGGGGAAATACATGAGGGTGGAAAGAAGTTACATTTGATGACTTTGGTCTTCTTGGTTTGTATGGAAGCTCA i calJac3.chr6 I 79 C 0 s mm10.chr2 49750023 299 + 182113224 ------------------------------------ATTAAAGCATGCACAG-------------------ATGTTCAGTAAAG-GCACACACGTCTGGGTGGGAGTACACCCGTGTGTACTCGTACACATGGGTGTGTTTGAAGGAGCAAAGGA-AACAAGGTCAGATATAGTTAAAA-------GGGAATGATTGGCAGAAGCAGGTGTGAGAGGGACAGAACTAACAGCACTGGTGTGTGTCCT------GCTTGGTAAAAAGAA--AGCACTGATTTTTCCCAGAGTTCAGAGAG----AGTCAAGCTGGAAGCATTTGCAAGGAATTTCAGCAGAGTGGAAAGAAGCCATATCTGATGGCTAGTGTCATC-------------------- i mm10.chr2 C 0 C 0 s canFam3.chr19 50663956 342 + 53741614 ----GGAAGGGGTGGAGGCGGCCGGGGAACTGCTCTTTAAACATGTGGACGTGTAGTAGGACGGAAGGAAGATGTGTTTCAAAgtgtgcgtgtgtgtgtgtgtctgcacac--ctgt------gtgcatgc------gtgtgAAGGAGCCAGGGG-GAAGAGGCGAAATAGATTTTGAACAAACGAGGAGGGGATTGACGGAGTCCGAGC-GAGAGGG-CAGTGCCAGCAGCGTAGGCGGAGGGGTC----AGGCTTGGAAGCGGTGG------------TTTCCA------------GGAGAAGTCGAGATGGACACATTTGCAGGAGAACACGGGCCGGTGG---GAAGGTGCATCCGAGGACTT-TATCTTCTCAGCTGATGTGGAGGCTCT i canFam3.chr19 C 0 C 0 a score=156851.000000 s hg38.chr2_GL582966v2_alt 78484 38 + 96131 GTCCTTGGTGGGGAAGTAGGGAAGAGAATGGGAAACCC s panTro4.chr2B 153191287 38 + 247518478 GTCCTTGGTGGGGAAGTAGGGAAGAGAATGGGAAACCC i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38397959 38 + 135000294 GTCCTTGATGGGGAAGTAGGGAAGAGAATGGGAAGCCC i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82350739 38 - 85365473 GTCCTTGGTGGGGAAGTAGGGAAGAGAATGGGAAGCCT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11962328 38 + 106825570 GTCCTTGGTGGGGAAGTAGGGAAAAGAATGGGAAGCCC i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37665804 38 + 132586672 GTCCTTGGTGGGGAAGTAGGGAAAAGAATGGGAAGCCC i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11322993 38 + 104110932 GTCCTTGGTGGGGAAGTAGGGAAAAGAATGGGAAGCCC i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34423248 38 + 128595539 GTCCTTGGTGGGGAAGTAGGGAAAAGAATGGGAAGCCC i chlSab2.chr10 I 201 C 0 s calJac3.chr6 87907175 38 - 158406734 GTCCTTGGTGGGAAAGTAGGGAAGAGAATGGGAAGCCC i calJac3.chr6 C 0 C 0 s mm10.chr2 49750322 28 + 182113224 ----------AGGGAGGAGGGAGGAGAAGGTGGAGCCC i mm10.chr2 C 0 C 0 s canFam3.chr19 50664298 38 + 53741614 GTCCTCGATGGAGAAGGAGGGGAGAGAATGGACAGCCT i canFam3.chr19 C 0 I 60 a score=247957.000000 s hg38.chr2_GL582966v2_alt 78522 94 + 96131 AAGGAGACTAG-ACATGGTTCAGGCTGCCAAGGTAGGGGATGTGCTATGGAAGAGTAGAAGGA-TTGCTGAGCAGTGGTGTTGGTGTTGAGTTAGA s panTro4.chr2B 153191325 94 + 247518478 AAGGAGACTAG-ACATGGTTCAGGCCGCCAAGGTAGGGGATGTGCTATGGAAGAGTAGAAGGA-TTGCTGAGCAGTGGTGTTGGTGTTGAGTTAGA i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38397997 94 + 135000294 AAGGAGACTAG-ATATGGTTCAGGCCGCCAAGGTAGGAGATGTGCTATGGAAGAGTAGAAGGA-TTGCTGAGCAGTGGTGTTGGTGTTGAGTCAGA i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82350777 94 - 85365473 AAGGAGACTAG-ACATGGTTCAGGCCACCAAGGTGGGGGACGTGCTATGGAAGAGGAGAAGGA-TTGCTGAGCAGTGGTGTTGGTGTTGAGTCAGA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11962366 87 + 106825570 AAGGAGACTAG-ACATGGTTCAGGCAGCCGAGGTGGCCGA----CTATGGAAAAGT---AGGA-TTGCTGAGCAGTGGTGTTGGTGTTGAGTCAGA i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37665842 87 + 132586672 AAGGAGACTAG-ACATGGTTCAGGCAGCCGAGGTGGCCGA----CTATGGAAAAGT---AGGA-TTGCTGAGCAGTGGTGTTGGTGTTGAGTCAGA i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11323031 90 + 104110932 AAGGAGACTAG-ACATGGTTCAGGCAGCCGAGGTGGGTGA----CTATGGAAAAGTAGAAGGA-TTGCTGAGCAGTGGTGTTGGTGTTGAGTCAGA i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34423286 90 + 128595539 AAGGAGACTAG-ACATGGTTCAGGCAGCCGAGGTGGGCGA----CTATGGAAAAGTAGAAGGA-TTGCTGAGCAGTGGTGTTGGTGTTGAGTCAGA i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87907213 93 - 158406734 AAGAAGACTAGAACACAGTTCAGGCAGCGGAGG-AGGGGACGTGCGATGGAAGAGTAGAAGGG--TGCTCAGCAGTGGTGTTGGTGCTGAGTCAGA i calJac3.chr6 C 0 C 0 s mm10.chr2 49750350 89 + 182113224 GGGGAGATAAG-A-----TTCAGCCAGTTG-TGCATAGAATCTACTAGGGATAAGTTCAAGGAGGTGCTGAACAGTGCAGTGCATGCCCAACAGGA i mm10.chr2 C 0 C 0 e canFam3.chr19 50664336 60 + 53741614 I a score=52362.000000 s hg38.chr2_GL582966v2_alt 78616 24 + 96131 AGCA---TGGGCTTGGCGTG-GCCCCTG s panTro4.chr2B 153191419 24 + 247518478 AGCA---TGGGCTTGGCGTG-GCCCCTG i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38398091 24 + 135000294 AGCA---TGGGCTTGGCGTG-GCCCCTG i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82350871 24 - 85365473 AGCA---TGGGCTTGGTGTG-GCCCCTG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11962453 15 + 106825570 AGCA---T---------GTG-GCCCCTG i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37665929 15 + 132586672 AGCA---T---------GTG-GCCCCTG i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11323121 15 + 104110932 AGCA---T---------GTG-GCCCCTG i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34423376 15 + 128595539 AGCA---T---------GTG-GCCCCTG i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87907306 24 - 158406734 AGCA---TGGATTTGGCGTG-GCCCCTG i calJac3.chr6 C 0 C 0 s mm10.chr2 49750439 28 + 182113224 AGCAGTGTGCAGTTGGCAAGCACCGCTG i mm10.chr2 C 0 I 489 s canFam3.chr19 50664396 24 + 53741614 AGCG---TGCCCTGGCCGTG-GCCCCTG i canFam3.chr19 I 60 C 0 a score=1728663.000000 s hg38.chr2_GL582966v2_alt 78640 527 + 96131 ACAGCATGGTTTAAGTGAGTTTCGAATCCTGGAAATGAAAATAAAG-AAGGCAGAAAATGATGGGCAA-TTTCAAGGCCTGCA-----------TGGCAATGGCTAGGCGATTAGG----TAGTAAGCACAGAC--CAAAACACAAATGACCATGGGGGCCTGGCCCTGGCAGGAGAGTGAAGCCAGAGCAAAGGTGATGGA-------CAGGGAGGCTAGAGAGGGGAGGGCACCTGGCCAGAGGTTATGACATGGACTGAAAAGGTTCAGTCCGAGGAAGGAGGTGGAAGCCATGACCATACATGGGAGGC---TGTGGTCCTAGGGAGGGTTAGGAGCTTGAGATCAGACTTCCA-------GATTTCATGATAGAAAA-CTCCCTAGGAAAGCCCTGCTTTTAGACCAGTGTTTTTCTGC-CGgtggttctctggccatcagcctcagcatcacctaggaaactgtttagatatgcaaattctcataccccaccccaggtccactgaatcagagactagggatggggcgtggcaatctaagtctcaacaaaccctcccctg s panTro4.chr2B 153191443 527 + 247518478 ACAGCATGGTTTAAGTGAGTTTAGAATCCTGGAAATGAAAATAAAG-GAGGCAGAAAATGATGGGCAA-TTTCAAGGCCTGCA-----------TGGCAATGGCTAGGCGATTAGG----TAGTAAGCACAGAC--CAAAACACAAATGACCATGGGGGCCTGGCCCTGGCAGGAGAGTGAAGCCAGAGCAAAGGTGATGGA-------CAGGGAGGCTAGAGAGGGGAGGGCACCTGGCCAGAGGTTATGACATGGACTGAAAAGGTTCAGTCCGAGGAAGGAGGTGGAAGCCATGACCATACATGGGAGGC---TCTGGTCCTAGGGAGGGTTAGGAGCTTGAGATCAGACTTCCA-------GATTTTATGATAGAAAA-CTCCCTAGGAAAGCCCTGCTTTTAGACCAGTGTTTTTCTGC-CAgtggttctctggccgtcagcctcagcatcacctaggaaactgtttagatatgcaaattctcataccccaccccaggtccactgaatcagagactagggatggggcgtggcaatctaagtctcaacaaaccctctcctg i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38398115 527 + 135000294 ACAGCATGGTTTAAGTGAGTTTAGAATCCTGGAAATGAAAATAAAG-AAGGCAGAAAATGATGGGCAA-TTTCAAGGCCTGCA-----------TGGCAATGGCCAGGCAATTAGG----TAGTAAGCACAGAC--CAAAATACAAATGACCATGGGGACCTGGACCTGGCAGGAGAGTGAAGCCAGAGCAAAGGTGATGGA-------CAGGGAGACTAGACAGGGGAGGGCACCTGGCCAGAGGTTATGACATGGACTGAAAAGTTTCAGTCCGAGGAAGGAGGTGGAAGCCATGACCATACATGGGAGGC---TCTGGTCCTAGGGAGGGTTAGGAGCTTGAGATCAGACTTCCA-------GATTTCATGATAGAAAA-CTCTCTAGGAAAGCCCTGCTTTTAGACCAGTGTTTTTCTGC-CGgtggttctctggccatcagcctcagcatcaactaggaaactgtttagatatgcaaattctcataccccaccccaggtccactgaatcagagactagggatggggcatggcaatctaagtctcaacaaaccctcccctg i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82350895 525 - 85365473 ACAGCATGGTTTAAGCAAGTTTAGAATCCTGGAAATGAAAATAAGG-AAGGCAGAAAATGATGGGCAA-TTTC-AGGCCTGCA-----------TGGCAATGGCTAGGCAATTA-G----TAGTAAGCACAGTC--CAAAATACAAATGACCATGGGGGCCTGGACCTGGCAGGAGAGTGAAGCCAGAGCAAAGGTGATGGC-------CAGGGAGACTAGACAGGGGAGGGCACCTGGCCAGAGGTTATGACATGGACTGAAAAGGTTCAGTCCGAGGAAGGAGGTGGAAGCCATGACCATACCTGGGAGGC---TGTGGTCCTAGGGAGGGTTAGGAGCTTGAGATCAGACTTCCA-------GATTTCATGATAGAAAA-CTCTCTAGGAAAGCCCTGCTTTTAGACCAGTGTTTTTCTGC-TGgtggttctctggccatcagcctcagcatcacctaggaaactgtttagatatggaaattctcatacctcaccccaggtccactgaatcagagactagggatgggacgtggcaatctaagtctcaacaaaccctcccctg i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11962468 537 + 106825570 ACAGCATGATTTAAGTGAGTTTAGAATCCTGGAAATTAAAATAAAG-AAGGCAGAAAATGATGGGCAA-TTTCAAGGCATGCA-----------TGGCAATGGCTAGGCAATTAGGTAGTTAGTAAGCACGGTC--CAAAATACAAATGACCATGGGGGCCTGGACCTGGCAGGAGAGTGAAGCCAGAGCAAAGGTGATTCACTAGAATCAGGGAGACTAGAC-GGGGAGGGCATCTGGCCAGAGGTTATGACATGGACTGAAAAGGTTCAGTCCGAGGAAGGAGGTGGAAGCCATGACCATACATGGAAGGC---TCTGGTCCTAGGGAGGGTTAGGAGCTTGAGATCAGACTTCCG-------GATTTAATGATAAAAAA-CTCTCTAGGAAAGCCCTGCTTTTAGACcagtggttttctgt-gggttgttctctggccatcagcctcagcatcacctaggaaactgtttagatatgcaaattctcatacctgaccccagatccactgaatcagagactagggttgaagtgtggcaatctaagtctcaacaaaccctccCCTC i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37665944 530 + 132586672 ACAGCATGATTTAAGTGAGTTTAGAATCCTGGAAATGAAAATAAAG-AAGGCAGAAAATGATGGGCAA-TTTCAAGGCGTGCA-----------TGGCAATGGCTAGGCAATTAGGTAGTTAGTAAGCACGGTC--CAAAATACAAATGACCATGGGGGCCTGGACCTGGCAGGAGAGTGAAGCCAGAGCAAAGGTGATGGA-------CAGGGAGACTAGAC-GGGGAGGGCATCTGGCCAGAGGTTATGACATGGACTGAAAAGGTTCAGTCCGAGGAAGGAGGTGGAAGCCATGACCATACATGGGAGGC---TCTGGTCCTAGGGAGGGTTAGGAGCTTGAGATCAGACTTCCG-------GATTTAATGATAAAAAA-CTCTCTAGGAAAGCCCTGCTTTTAGACcagtggttttctgt-gggtggttctctggccatcagcctcagcatcacctaggaaactgtttagatatgcaaattctcatacctgaccccagatccactgaatcagagactagggttgaagtgtggcaatctaagtctcaacaaaccctccCCTC i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11323136 530 + 104110932 ACAGCATGATTTAAGTGAGTTTAGAAtcctggaaatgaaaataaag-aaggcagaaaatgaTGGGCAA-TTTCAAGGCGTGCA-----------TGGCAATGGCTAGGCAATTAGGTAGTTAGTAAGCACGGTC--CAAAATACAAATGACCATGGGGGCCTGGACCTGGCAGGAGAGTGAAGCCAGAGCAAAGGTGATGGA-------CAGGGAGACTAGAC-GGGGAGGGCATCTGGCCAGACGTTATGACATGGACTGAAAAGGTTCAGTCCGAGGAAGGAGGTGGAAGCCATGACCATACATGGGAGGC---TCTGGTCCTAGGGAGGGTTAGGAGCTTAAGATCAGACTTCTG-------GATTTAATGATAAAAAA-CTCTCTAGGAAAGCCCTGCTTTTAGACCAGTGGTTTTCTGT-GGGTGGTTCTCTGGCCATCAGCCTCAGCATCACCTAGGAAACTGTTTAGATATGCAAATTCTCATACCCGACCCCAGATCCACTGAATCAGAGACTAGGGTTGGAGTGTGGCAATCTAAGTCTCAACAAACCCTCCGCTG i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34423391 530 + 128595539 ACAGCATGATTTAAGTGAGTTTAGAATCCTGGAAATGAAAATAAAG-AAGGCAGAAAATGATGggcaa-tttcaaggcgtgca-----------tggcaatggcaaggcaatTAGGTAGTTAGTAAGCACGGTC--CAAAATACAAATGACCGTGGGGGCCTGGACCTGGCAGGAGAGTGAAGCCAGAGCAAAGGTGATGGA-------CAAGGAGACTAGAC-GGGGAGGGCATCTGGCCAGAGGTTATGACATGGACTGAAAAGGTTCAGTCCGAGGAAGGAGGTGGAAGCCATGACCATACATGGGAGGC---TCTGGTCCTAGGGAGGGTTAGGAGCTTGAGATCAGACTTCCG-------GATTTAATGATAAAAAA-CTCTCTAGGAAAGCCCTGCTTTTAGACcagtggttttcttc-gggtggttctctggccatcagcctcagcatcacctaggaaactgtttagatatgcaaattctcatacccgaccccagatccactgaatcagagactagggttggagtgtggcaatctaagtctcaacaaaccctcccctg i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87907330 526 - 158406734 ACAGCATGGTTCAAGCGAGTTTAGAATTCTGGAAATGAAAATAAAG-AAGGCAGAGAATGCCGGGCAA-TTTCAAGGCCTGCA-----------TGGCAACTGCTAGGCAAGTACA----TGGTGAACACAATC--CAAAATACAAATGACCATGGGGGCCTGGACCAGACAGGAGAGTGAAGCCAGAGCAAA-GTGATGGA-------CAGGGAGACTAGAC-GGGGAGGGCACCTGGCCAGAGGTTATGATGTGGACTGAAAAGTTTCCGTCTGAAGAAGGAGGTGGAAGCCATGACCATACATAGGACGC---TCTGGTCTCAGGGACGGTTAGGAGCTTGAGATCAGACTTCCA-------GATTTCGCGATAAAAAATCTCTCTAGGAAAGCCCTGCTTTTAGACcagtagttttctgc-cggtggttctccggccatcagcctcagcatcacctaggaaactgtttacatatgcaaattctcatactctaccctagatccactgaatcagagactagggctggggtgtggcaatctaagtctcaattaaccctcgcctg i calJac3.chr6 C 0 C 0 s mm10.chr2 49750956 486 + 182113224 acaGCATGACTCTAGCAAGTTGA-AATCTTGCTAATGCAAAAAGCA-AAGGCAGAGACTCCTGGGAGATTTTCAAAACCTGCACAAAGACTGGGTGTCAATGGTTAGTGCATTGTA----TGAGGAGCACACTCTACAAAGCACATATTACCCTGGGG-CCTGCACCAGGCAGGAGGATGAGGCCAGGATAGATGTGATGTG-------C--------------TGGAAGTGCACCTGATGCCAGCTTAGGA-------------------GACCAGTGAAGAAG-----AGCCCTGCGCCTTGTTGGGAGGAGGGTGCTGTCCAGAGGAAGGTCAAGAGGTGGAG-TCAGAATCCCCTGACTCTGACTTCATTCTATAGAA-CTTCCTAAGGATGACTTAGCTTTAGA--------TTTCTGCTCtgtgggcctctgg-cagctgcattggcatcacctggaaatttgcttaaata----------cataatataccacagagctgaggactcagagatggaggt--gggctaagcactctgagttttagtaagtgcccc---- i mm10.chr2 I 489 C 0 s canFam3.chr19 50664420 371 + 53741614 ACGGCGTGGTCCTAGTCAATTTGGAGGCCTGGAAATGACAATAAGGAAAGGTGGAGAGTGAAAGGAGA-GTTTGAGGCCTGGA-----------TGGCAGTGGTGGGGCAGGTAGG----TAGTGACCCCGGTTATCAAGATGGAAATGACCCTCAGG-CCTGGGCCAGGTAGGAGGGAGAGGCCGGAGCAGAGGGGCCAGA-------GAGCGAGACCTGTG-------------------GAGGTGATGGCAAGAACTGGAGAAGCCCTGTCGGGGGGAGGAG----------------------------------GGTCCGGGGGAG----------CTAAGGCCAGGCTTCCC-TTCCCTGATTTTTTGATCCGAGA-CTCTCAAGGGAAGCCCTAC---TAGACCAGGGGCTCTCGGA-GTGTGGTTCT------------------------------------------------------------GCCCCAG--------------------------GAGGGTGGCACGTT---------------CTCTCCTG i canFam3.chr19 C 0 C 0 a score=365963.000000 s hg38.chr2_GL582966v2_alt 79167 117 + 96131 gagagcccagtgctaaggctcaaatttggggaGCTCAGTTTTAGACTGAAGAGCTGCAGGTTTGAGATGCTCATGTAGCCATTACCTTTGAGAAAAAGGATGATGATCTCTTCTATA s panTro4.chr2B 153191970 117 + 247518478 gggagcccagtgctaaggctcaaatttggggaGCTCAGTTTTAGACTGAAGAGCTGCAGGTTTGAGATGCTCATGTAGCCATTACCTTTGAGAAAAAGGATGATGATCTCTTCTATA i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38398642 117 + 135000294 gggagcccagtgctaaggctcaaatttggggaGCTCAGTTTTAGACTGAAGAGCTTCAGGTTTGAGATGCTCATGTAGCCATTACCTTTGAGAAAAAGGATGATGATCTCTTCTATA i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82351420 117 - 85365473 gggagcccagtgctaaggctcaaatttgggGGGCTCAGTTTTAGACTGAAGAGCTGCAGGTTTGAGATGCTCATGTAGCCGTTACCTTTCAGAAAAAGGATGATGATCTCTTCGACA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11963005 117 + 106825570 GGGAGCCGGGTGGTAAGGCTCAACTTTGGGGAGCTCAGTTTTAGACTGAAGAGCTGCAGGTGTGAGATGCTCATGTAACCATTACCTTTTAGAAAAAGGATGATGATCTCTTCTATA i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37666474 117 + 132586672 GGGAGCCGGGTGCTAAGGCTCAACTTTGGGGAGCTCAGTTTTAGACTGAAGAGCTGCAGGTGTGAGATGCTCATGTAACCATTACCTTTCAGAAAAAGGATGATGATCTCTTCTATA i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11323666 117 + 104110932 GGGAGCCGGATGCTAAGGCTCAACTTTGGGGAGCTCAGTTTTAGACTGAAGAGCAGCAGGTGTGAGATGCTCATGTAACCATTACCTTTCAGAAAAAGGATGATGATCTCTTCTATA i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34423921 117 + 128595539 gggagccgggtgctaaggctcaactttggggaGCTCAGTTTTAGACTGAAGAGCTGCAGGTTTGAGATGCTCATGTAGCCATTACCTTTCAGAAAAAGGATGATGATCTCTTCTATA i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87907856 117 - 158406734 gggagcccagtgctaaggcttaagtttggggaGCTCAGTTTTAGACTGAAGAGCTGCAGGTTTGAGATGCTCATGTAGCAATTACCTTTCAGAGAAAGGATGATGGTCTCTTTTGTA i calJac3.chr6 C 0 C 0 s mm10.chr2 49751442 97 + 182113224 gggctcctgattcgcaa--tcaagtttgagagttcctgCTGGGGGCT---GAGCTGATGGTA------------GAAACCATTACTCTGCTGAAGAAG---GGTGGTTTCTTCTGCT i mm10.chr2 C 0 C 0 e canFam3.chr19 50664791 0 + 53741614 C a score=1544447.000000 s hg38.chr2_GL582966v2_alt 79284 431 + 96131 ATCAGACAGAGCAAACCTGCTTTTCCACCTTGGAACACTGGGATGTGTTAGGACCTGTACTTTCCAATTTATCTGTGCCACTCGGCTTGCCAGGAGTGCAGTGT-TTTGCCAATTTCAAGATCTGATAAATTTCAAGAATTTACC--------CAGCACCCGGATGCTATGATTAATTTGAGCCTGGTTCATTAATTAATTTTATAGATTTGGAAGCTGAAG---GGACAAGCAGAGGCCATTAAGACTTCCCAGTGGGACCATAGACACTTGCTTACAAGTTTG---GTGACTTG--TTGTCCCA-CCATGATGGCTGAAATCAAATTTAGGTCCTGGGTTTATGTTTTTGCAGTTGTTGTTTCTTAATGAGTTTTGGAATGCTTTCTTTTGAAAAGAAGTCTCTATTTACT-ACATGAAAGGCAGATGTATATTTTACTGAAGATAAA s panTro4.chr2B 153192087 431 + 247518478 ATCAGACAGAGCAAACCTGCTTTTCCACCTTGGAACACTGGGATGTGTTAGGACCTGTACTTTCCAATTTATCTGTGCCACTCGGCTTGCCAGGAGTGCAGTGT-TTTGCCAATTTCAAGATCTGATAAATTTCAAGAATTTACC--------CAGCACCCGGATGCGATGATTAATTTGAGCCTGATTCATTAATTAATTTTATAGATTTGGAAGCTGAAG---GGACAAGCAGAGGCCATTAAGACTTCCCAGTGGGACCATAGACACTTGCTTACAAGTTTG---GTGACTTG--TTGTCCCA-TCATGATGGCTGAAATCAAATTTAGGTCCTGGGTTTATGTTTTTACAGTTGTTGTTTCTTAATGAGTTTTGGAATGCTTTCTTTTGAAAAGAAGTCTCTATTTACT-ACATGAAAGGCAGATGTATATTTTACTGAAGATAAA i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38398759 431 + 135000294 ATCAGACAGAGCAAACCTGCTTTTCCACCTTGGAACACTGGGATGTGTTAGGACCTGTACTTTCCAATTTATCTGTGCCACTCGGCTTGCCAGGAGTGCAGTGT-TTTGCCGATTTCAAGATCTGATAAATTTCAAGAATTTACC--------CAGCACCTGGATGCTATGATTAATTTGAGCCTGATTCATTAATGAATTTTATAGATTTGGAAGCTGAAG---GGACAAGCAGAGGCCATTAAGACTTCCCAGTGGGACCATAGGCACTTGCTTACAAGTTTG---GTGACTTG--TTGTCCCA-TCATTATGGCTGAAATCAAATTTAGGTCCTGGGTTTATGTTTTCGCAGTTGTTGTTTCTTAATGAGTTTTGGAATGCTTTCTTTTGAAAAGAAGTCTCTATTTACT-ACATGAAAGGCAGATGTATATTTTACTGAAGATAAA i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82351537 431 - 85365473 ATCAGACAGAGCAAACCTGCTTTTCCACCTTGGAACACCGGGATGTGTTTGCACCTGTACTTTCCAATTTATCTGTGCCACTCGGCTTGCCAGGAGTGCAGTGT-TTTGCCAATTTCAAGATCTGATAAATTTCAAGAATTTACC--------CAGCATCCAGATGCTATGATTAATTTGAGCCTGATTCATTAATGAATTTTATAGATTTGGAAGCTGAAG---GGACAAGCAGAGGCCATTAAGACTTCCCAGTGGGACCATAGACACTTGGTTACAAGTTTG---GTGACTTG--TTGTCCCA-TCATGATGGCTGAAATCAAATTTAGGTCCTGGGTTTATGTTTTCGCAGTTGTTGTTTCTTAATAAGTTTTGGAATGCTTTCTTTTGAAAAGAAGTCTCTATTTACT-ACATGAAAGGGAGATGTATATTTTACTGAAGATAAC i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11963122 431 + 106825570 ATCAGACCGAGCAAACCTGCTTTTCCACCTTGGAACACCAGGATGTGTTTGCACCTGTACTTTCCAATTTATCTGTGCCACTTGGCTTGCCAGGAGTGCAGCGT-TTTGCCAATTTCAAGATTTGATAAATTTCAAGAATTTACC--------CAGCACCCAGATGCTATGATTAATTTGAGCTTGATTCGTTAATGAATTTTATAGATTTGGAAGCTGAAG---GGACAAGCAGAGGCCATTAAGACTTCCCAGTGGGACCACAGACATTTGCTTACAAGTTTG---GTGACTTG--TTATCCCA-TCATGAAGGCTGAAGTCAAATTTAGGTCCTGGGTTTATGTTTTCACAGTTGTTGTTTCTTAACGACTTTTGGAATGCTTTCTTTTGAAAAGAAGTCTCTATTTACT-ACACGCAAGGGAGACATATATTTTACTGAAGATAAA i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37666591 431 + 132586672 ATCAGACCGAGCAAACCTGCTTTTCCACCTTGGAACACCAGGATGTGTTTGCACCTGTACTTTCCAATTTATCTGTGCCACTTGGCTTGCCAGGAGTGCAGCGT-TTTGCCAATTTCAAGATTTGATAAATTTCAAGAATTTACC--------CAGCACCCAGATGCTATGATTAATTTGAGCTTGATTCGTTAATGAATTTTATAGATTTGGAAGCTGAAG---GGACAAGCAGAGGCCATTAAGACTTCCCAGTGGGACCACAGACATTTGCTTACAAGTTTG---GTGACTTG--TTATCCCA-TCATGATGGCTGAAGTCAAATTTAGGTCCTGGGTTTATGTTTTCACAGTTGTTGTTTCTTAACGAATTTTGGAATGCTTTCTTTTGAAAAGAAGTCTCTATTTACT-ACACGCAAGGGAGACATATATTTTACTGAAGATAAA i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11323783 431 + 104110932 ATCAGACCGAGCAAACCTGCTTTTCCACCTTGGAACACCAGGATGTGTTTGCACCTGTACTTCCCAATTTATCTGTGCCACTTGGCTTGCCAGGAGTGCAGCGT-TTTGCCAATTTCAAGATTTGATAAATTTCAAGAATTTACC--------CAGCACCCAGATGCTATGATTAATTTGAGCTTGATTCGTTAATGAATTTTATAGATTTGGAAGCTGAAG---GGACAAGCAGAGGCCATTAAGACTTCCCAGTGGGACCACAGACATTTGCTTACAAGTTTG---GTGACTTG--TTATCCCA-TCATGATGGCTGAAGTCAAATTTAGGTCCTGGGTTTATGTTTTCACAGTTGTTTTTTCTTAACGAATTTTGGAatgctttcttttgaaaagaaGTCTCTATTTACT-ACACGCAAGGGAGACATATATTTTACTGAAGATAAA i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34424038 431 + 128595539 ATCAGACCGAGCAAACCTGCTTTTCCACCTTGGAACACCAGGATCTGTTTGCACCTGTACTTTCCAATTTATCTGTGCCACTTGGCTTGCCAGGAGTGCAGCGT-TGTGCCAATTTCAAGATTTGATAAATTTCAAGAATTTACC--------CAGCACCCAGATGCTATGATTAATTTGAGCTTGATTCATTAATGAATTTTATAGATTTGGAAGCTGAAG---GGACAAGCAGAGGCCATTAAGACTTCCCAGTGGGACCACAGACATTTGCTTACAAGTTTG---GTGACTTG--TTATCCCA-TCATGATGGCTGAAATCAAATTTAGGTCCTGGGTTTATGTTTTCACAGTTGTTGTTTCTTAATGAATTTTGGAATGCTTTCTTTTGAAAAGAAGTCTCTATTTACT-ACACGCAAGGGAGACATATATTTTACTGAAGATAAA i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87907973 426 - 158406734 ATCA----GAGCAAACATGCTTTGCTACCTTGGAACACGGGGATGTATTTGCACCTGTACTTTCCAATTTATCTGTGCCACTTGGCTTGCCAGGAGTGCAGTGT-TTTGCCAATTTCAAGATCTGATAAATTTCAAAAATTTACC--------CAGCAAGAGGATGCTGTGATTAATTTGGGACTGATTCACTAATGAATTTTATAGATTTGGAAGCTGAAG---GGACAAGCAGAGGCCATTAAGACTTCTCAGTGGGATCACAGACACTTGCTTACAAGCTTG---GTGACTTG--TTATCCCA-TCATGATGGCTGAAGTCAAATTTAGGTCTTGGGTTTATGTTTTCTCAGTTGTTGTTTCTTAATGAG-TTTGGAATGCTTTCTTTTGAAAAGAAGTCTCTATTTACT-ACATGCAAGGGAGAGGTATACTTTACTGAAGATTAA i calJac3.chr6 C 0 I 315 s mm10.chr2 49751539 424 + 182113224 GTTCCACCAGACAGGCATGTTTTGCTGTTTTTGAATGTCAGGTTGTGTTTCCACATGCATTTCCTAATTTATCTGTGGCACCTTGCTTGTCAAGAGTATGGAGCGGCCGCCAGTTTCATGATCTGATAAATCGGAAGGATTTTCC--------CAGCACCTGGCTGCTGTGATGGGGCTGAGCCTGACTCATTCAGGAACTGCATAGCTTTGGGTGTTTAAG---AGACAAGCAGAAGCCGTTAGGCTCCCCCAGTGGCACAAT-GGCTCTGGCTGACAGGCTTG---GCAATTTC--TCATCTGA-TCTTGATGGCT-AAGCTGAACTCGAGCCTTATGCTTA--TTTTCACACTGGAT-CTTCTTAATAAGTTGTGAGCCTTTTTCTTTTGAAAAGAGAAATCTTTTTATC----TGCAGGGGAGAGGAACATTTCGTTAGAGAGAAA i mm10.chr2 C 0 I 1 s canFam3.chr19 50664791 349 + 53741614 ----------------------------------------------------ACCTG----------------------------------------ACAGT-T-TTCCCCCCTCCCGAGACCTGATGACTTCCGAGAGCTTGTCTAGCAGCACAGCGCCCGGAGGCAGTGACGTGCTTGAGACGGATGCGTTAAGTGATTTCACGGGATTGGAAGCCGAGGGACGGACGAGCAGAGGCCATTGGGACTTCCCAGTGG-ACCACAGGCCCTCGCCC-----CTCGCCCGCAGCTTGCCTTATCTCAGCCGGGATGTTTGAAATCAAATTTAGGTCTTGGGTTTATGTTTTCACACTGGTT-CCTTTTAATGAATTTTGGAACCGCTCCTTTTGAAAAGTCAAGTCTGTTTACCCACCTGCCAGGGAGAGGTTAAATTTCACAGAGAGAAC i canFam3.chr19 C 0 C 0 a score=1872900.000000 s hg38.chr2_GL582966v2_alt 79715 525 + 96131 TCATCTACAACTTTCAAAAGCAGATTTGAAGGAG-------------TT-TTTTTTTTTTAGCTCTCTAAAAATTA--GCTCCTC---AAATCGCTTTTCAT----ACTAATAAGGGAAATTAATTGGGGGATTTCTTGAGTCTAAACTTTTAGAAC----CTCTATTTTCACTTTCAGAATACCCTTT-GGTGGGAA-----TGGG--GA-TTTTTTTTTTCC---------------------------------ATCCACATT--ATCCTGGGGCGGAGGGTGGGTGGGTGA--------CAGCCTGTCCTGCTGACCCCTTGGTGTCAATGCAGAGTGTGGAGTTGGACAACGATGATGGAGGGGGCAGTGCTGCCCAGAAGCAGAAAATTTCCTTCTTGGAGAATAACCTGGAGCAGCTCACCAAAGTTCACAAGCAGGTAGGAGAGTTCTGCCCGCTCCCCTCTGATTCCCTCCTCTCTCCTGGAAAGAAG-CCCCACCAGGTTTGGCCACAGTGTGCGGAGAAG-GCACTGAGATTGAAGGTAAAAGAACTGTACACTatcagaggacatgagggctggaaa---------gg-tccttacaaatcctt---- s panTro4.chr2B 153192518 522 + 247518478 TCATCTACAACTTTCAAAAGCAGATTTGAAGGAG-----------------TTTTTTTTTAGCTCTCTAAAAATTA--GCTCCTC---AAATCGCTTTTCAT----ACTAATAAGGGAAATTAATTGGGGGATTTCTTGAGTCTAAACTTTTAGAAC----CTCTATTTTCACTTTCAGAATACCCTTT-GGTGGGAA-----TGGG--GA-TTTTTTTTTTCC---------------------------------ATCCACATT--ATCCTGGGGCGGAGGGTGGGTGGGTGA--------CAGCCTGTCCTGCTGACCCCTTGGTGTCAATGCAGAGTGTGGAGTTGGACAACGATGATGGAGGGGGCAGTGCTGCCCAGAAGCAGAAAATTTCCTTCTTGGAGAATAACCTGGAGCAGCTCACCAAAGTTCACAAGCAGGTAGGAGAATTCTGCCCGCTCCCCTCTGATTCCCCCCTCTCTCCTGGAAAGAAG-CCCCACCAGGTTTGGCCACAGTGTGCGGAGAAG-GCACTGAGATTGAAGGTAAAAGAACTGTACACTatcagaggacatgagggctggaaa---------gg-tccttacaaatcctt---- i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38399190 542 + 135000294 TCATCTGCAACTTTCAAAAGCAGATTTGAAGGAGttttttttttttttt-ttttttttttAGCTCTCTAAAAATTA--GCTCCTC---AAATCGCTTTTCAT----ACTAATAAGGGAAATTATTTGGGGGATTTGTTGAGTCTAAACTTTTAGAACCTCTCTCTATTTTCACTTTCAGAATACCCTTT-GGTGGGAA-----TGGG--GA-TTTTTTTTTTCC---------------------------------ATCCACATT--ATCCTGGGGCGGTGGGTGGGTGGGTGA--------CAGCCTGTCCTGCTGACCCCTTGGTGTCAATGCAGAGTGTGGAGTTGGACAGCGATGATGGAGGGGGCAGTGCTGCCCAGAAGCAGAAAATTTCCTTCTTGGAGAATAACCTGGAGCAGCTCACCAAAGTTCACAAGCAGGTAGGAGAGTTCTGCCCGCTCCCCTCTGATTCCCCTCTCTCTCCTGGAAAGAAG-CCCTACCAGGTTTGGCCACAGTGTGCGGAGAAG-GCACTGAGATTGAAGGTAAAAGAACTGTACACTATCAGAGGACATGTGGGCTGGAAA---------GG-TCCTTACAAATCCTT---- i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82351968 531 - 85365473 TCATCTGCAACTTTCAAAAGCAGATTTGAAGGAG----------------TTTTTTTTTTAGCTCTCTAAAAAATA--GCTCCTCCTTAAATCGCTTTTCAT----ACTAATAAGGGAAATTAATTGGGGGATATGTTGAGTCTAAACTTTTAGAACCTCTCTCTGTTTTCACTTTCAGAATACCCTTT-GGTGGGAA-----TGGG--GATTTTTTTTTTTCC---------------------------------ATCCACATT--ATCCTGGGGTGGAGGGTGGGTGGGTGA--------CAGCCTGTCCTGCTGACCCCTTGGTGTCAATGCAGAGTGTGGAGTTGGACAGCGATGATGGAGGGGGCAGTGCTGCCCAGAAGCAGAAAATTTCCTTCTTGGAGAATAACCTGGAGCAGCTCACCAAAGTTCACAAGCAGGTAGGAGAGTTCTGCCTGCTGCGCTCTGATTCCCCCCTCTCTCCTGGAAAGAAG-CCCCACCAGGTTTGGCCACAGTGTGCGGAGAAG-GCACTGAGATTGAAGGTAAAAGAACTGTACACTatcagaggacgtgagggctggaaa---------gg-tccttacaaatcctt---- i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11963553 543 + 106825570 TCATCTGTAACTTTCAAAAGCAGATTTTGAAGtg-ttttgttttgtttt-gttttgttttAGCTCCCTAAAAAATA--GCTCCTCCTTAAATCACTTTTCAT----ACTAATAAGGGAAATTAATTGGGGGATTTGTTGAGTCTAAACTTTTAGAACCTCTCTCTATTTTCACTTTCAGAATACCCTTT-GGTGGGAA-----TGGG--GA-TTCTTTTTTTCT---------------------------------ATCCACATT--ATCCTGGGGTGGAGGGTGGGTGGATGA--------CAGCCCGTCCTGCTGACCCCCTGGTGTCAATGCAGAGTGTGGAGTTGGACAGCGATGATGGAGGCGGCAGTGCTGCCCAGAAGCAGAAAATTTCCTTCTTGGAGAATAACCTGGAGCAGCTCACCAAGGTTCACAAGCAGGTAGGAGAGTTCTGCCCACTCTCCTCTGCTTCCCTCCTCTCTCCC-GAAAGAAG-CCCCACCAGGTTTGGCCATGGTGTGCGGAGAAG-GCACTGAGATTGAAGGTAAAAGAACTGTACTCCatcagaggacaagagggctggaaa---------gg-tccttacaaatcctt---- i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37667022 543 + 132586672 TCATCTGTAACTTTCAAAAGCAGATTTTGAAGtg-ttttgttttgtttt-gttttgttttAGCTCCCTAAAAAATA--GCTCCTCCTTAAATCACTTTTCAT----ACTAATAAGGGAAATTAATTGGGGGATTTGTTGAGTCTAAACTTTTAGAACCTCTCTCTATTTTCACTTTCAGAATACCCTTT-GGTGGGGA-----TGGG--GA-TTCTTTTTTTCC---------------------------------ATCCACATT--ATCCTGGGGTGGAGGGTGGGTGGATGA--------CAGCCCGTCCTGCTGACCCCCTGGTGTCAATGCAGAGTGTGGAGTTGGACAGCGATGATGGAGGCGGCAGTGCTGCCCAGAAGCAGAAAATTTCCTTCTTGGAGAATAACCTGGAGCAGCTCACCAAGGTTCACAAGCAGGTAGGAGAGTTCTGCCCACTCTCCTCTGCTTCCCTCCTCTCTCCC-GAAAGAAG-CCCCACCAGGTTTGGCCATGGTGTGCGGAGAAG-GCACTGAGATTGAAGGTAAAAGAACTGTACTCCATCAGAGGACAAGAGGGCTGGAAA---------GG-TCCTTACAAATCCTT---- i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11324214 538 + 104110932 TCATCTGTAACTTTCAAAAGCAGAttttgaag------tgttttgtttt-gttttgttttagctccCTAAAAAATA--GCTCCTCCTTAAATCACTTTTCAT----ACTAATAAGGGAAATTAATTGGGGGATTTGTTGAGTCTAAACTTTTAGAACCTCTCTCTATTTTCACTTTCAGAATACTCTTT-GGTGGGAA-----TGGG--GA-TTCtttttttCC---------------------------------ATCCACATT--AtcctggggtggagggtgggtggATGA--------CAGCCCGTCCTGCTGACCCCTTGGTGTCAATGCAGAGTGTGGAGTTGGACAGCGATGATGGAGGTGGCAGCGCTGCCCAGAAGCAGAAAATTTCCTTCTTGGAGAATAACCTGGAGCAGCTCACCAAGGTTCACAAGCAGGTAGGAGAGTTCTGCCcactctcctctgcctccctcttctctccc-gaAAGAAG-CCCCACCAGGTTTGGCCATGGTGTGCGGAGAAG-GCACTGAGATTGAAGGTAAAAGAACTGTACTCCATCAGAGGACAAGAGGGCTGGAAA---------GG-TCCTTACAAATCCTT---- i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34424469 543 + 128595539 TCATCTGTAACTTTCAAAAGCAGATTTTGAAGtg-ttttgttttgtttt-gttttgttttAGCTCCCTAAAAAATA--GCTCCTCCTTAAATCACTTTTCGT----ACTAATAAGGGAAATTAATTGGGGGATTTGTTGAGTCTAAACTTTTAGAACCTCTCTCTATTTTCACTTTCAGAATACCCTTT-GGTGGGAA-----TGGG--GA-TTCTTTTTTTCC---------------------------------ATCCACATT--ATCCTGGGGTGGAGGGTGGGTGGATGA--------CAGCCCGTCCTGCTGACCCCTTGGTGTCAATGCAGAGTGTGGAGTTGGACAGCGATGATGGAGGCGGCAGTGCTGCCCAGAAGCAGAAAATTTCCTTCTTGGAGAATAACCTGGAGCAGCTCACCAAGGTTCACAAGCAGGTAGGAAAGTTCTGCCCACTCTCCTCTGCTTCCCTCCTCTCTCCC-GAAAGAAG-CCCCACCAGGTTTGGCTGTGGTGTGCGGAGAAG-GCACTGAGATTGAAGGTAAAAGAACTGTACTCCATCAGAGGACAAGAGGGCTGGAAA---------GG-TCCTTACAAATCCTT---- i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87908714 508 - 158406734 TCATCTGTAACTTTCAAAAGCAGATTTGAAGG------------------TTTTTTTTTTAGTTATCTAAAAAATA--GCTCCTCCTTAAATCATTTTTTGT----ACTAATAAGGGAAATTAATT-------------------AACTTTTAAAAC--CTCTCTATTTTTGCTTTCAGAATACCCTTT-GGTGGGAA-----TGGG--GA-TTTTTTTTTTTC---------------------------------ATCCACATT--ATCCTGGGGTGGAGGGTGGGTGGGTGA--------CAGCCTGTCCTTCTGACCTCTTGGTGTTGATACAGAGTGTGGAGTTGGACAGTGATGATGGAGGGGGCAGTGCTGCCCAGAAGCAGAAAATTTCCTTTTTGGAGAATAACCTGGAGCAGCTCACCAAGGTTCACAAACAGGTAGGAGAGTTCCGCCTGCTCCCCTCTGCTTACCCCCTCTCTCCTGGAAACAAG-CCCCACCAAGTTTGGCCACGTGGTACATAGACG-GTGCTGAGATTGAAGGTAAAAGAACTGTACGCCATCAGAGGACATAAGGGCTGCAAA---------GGTTCCCTACAAATCCTT---- i calJac3.chr6 I 315 C 0 s mm10.chr2 49751964 547 + 182113224 GCGTGTGCAGCATACAAAAGCAGATCTGAAGGCA----------------TTCTTATTCCAGCATCCTAAAATAAG--GCCTCGCGACA------CTTCAGT----GGAAAGCAGGGAAATTTATCGGGAAGTCCCCTGATTGGAGACTTTGACAACTGCTCTTCATTTTCACTTTCAGACTGTCCTTTGGGTGGGGGGGTGTTGAG--GA-TTTTTCTTTTTC----------------AGAAGTAAAA-------ATGTATCTTAAACACTGGGTAGGTGACTGGGGAGGGGAGGGGGAAGTGGGTCATACCACTGACTGTCATGTGTGGATACAGAGTGTGGAGCTGGACAGCGACGATGGAGGGGGCAGCGCTGCTCAGAAGCAGAAGATCTCCTTCCTGGAGAACAACCTGGAACAGCTTACCAAGGTGCACAAGCAGGTGAGTGAGCTCGGCACCCTGGCCC---GGCCTCTGCTCTCTCCCGGCA--CAG-CTTTGGCTGG-TTGCCTGCAACACAGGGAGAAGAGTTCTCATGTTGGATGT-------CTGCTCGTGGTCAAAGAAAACGTGTGCTGGAAAAAAAAATGCAG-TCTTCAAAAATCCCT---- i mm10.chr2 I 1 I 463 s canFam3.chr19 50665140 578 + 53741614 TAATCTGTATCTCTCAAAGGAAGATTGGAAG----TTCTGTTTCGTTCTGTTTTTTCTCTATCTCTCTAGACTATAATGCTCGCC------ACACCCTTGACCCCAACCAACCGAGGGAGTTCATTGGGAAGGTCAATGAGCCTCCGCTATTAGAACCTCTCTTGAGTTTTGCTCTCAGAATAGCCTTT-GGTGGGGT-----CGGGGTGG-ttttttttttttttttttttttttttGAAGAAGAATAAGAATGTTGTCCAGCTT--CTGCTGGGACTGTGGGCGGGCTGCGTG--------CAGACCTGCCCACTGACCCCTC-GTGTTGGTGCAGAGCGTGGAGCTGGACAGCGATGACGGAGGGGGCAGTGCTGCCCAGAAGCAGAAAATTTCCTTCCTGGAGAATAACCTGGAGCAGCTCACAAAGGTTCACAAACAGGTAAGAGAGTCGTGCCGGCT-TCCTCTGCTTCTC-GTACTCTCCTGGAAAGAAGCCCCCGCTACACTTGGCCACAGTCCCGGGAGACG-GCTCTGACCGTAGAGGTAAAAGGACCCAACGTCACCAGGGGACGTTAGTGCCAGAGG---------GG-TCCTTG-GAGTCCTTCATT i canFam3.chr19 C 0 C 0 a score=479745.000000 s hg38.chr2_GL582966v2_alt 80240 133 + 96131 tagttctcagtga-cttcccgtatatataaaggactttcttttaTCAAAGCCAAATATAACGCATAGGGTTTGAGCTCTCTGGGGTTGGAGAGGGAAGTGTTCAGAGGCCTGTCTTTTCATCCTGCCTCCACCC s panTro4.chr2B 153193040 133 + 247518478 tagttctcagtga-cttcccgtatatataaaggactttcttttaTCAAAGCCAAATATAACGCATAGGGTTTGAGCTCTCTGGGGTTGGAGAGGGAAGTGTTCAGAGGCCTGTCTTTTCATCCTGCCTCCACCC i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38399732 133 + 135000294 TAGTTCTCAGTGA-CTTCCTGTATATATAAAGGACTTTCTTTTATCAAAGCCAAATATAACGCATAGGGTTTGAGCTCTCTGGGGTTGGAGAGGGAAGTGTTCAGAGGCCTGTCTTTTCATCCTGCCTCCACCC i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82352499 133 - 85365473 tagttctcagtga-cttcccatatatataaaggactttcttttaTCAAAGCCAAATATAACGCATAGGGTTTGAGCTCTCTGGGGTTGGAGAGGGAAGTGTTCAGAGGCCTGTCTTTTCATCCTGCCTCCACCC i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11964096 133 + 106825570 tagttctcagtga-cttcccatatatataaaggactttcttttCTCAAAGCCAAATATAAAGCATTGGGTTTGAGCTCTCTGGGGTTGGAGAGGGAAGTGTTCAGAGGCCTGTCTTTTCATCCTGCCTCCACCC i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37667565 133 + 132586672 TAGTTCTCAGTGA-CTTCCCATATATATAAAGGACTTTCTTTTCTCAAAGCCAAATATAAAGCATTGGGTTTGAGCTCTCTGGGGTTGGAGAGGGAAGTGTTCAGAGGCCTGTCTTTTCATCCTGCCTCCACCC i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11324752 133 + 104110932 TAGTTCTCAGTGA-CTTCCCATATATATAAAGGACTTTCTTTTCTCAAAGCCAAATATAAAGCATTGGGTTTGAGCTCTCTGGGGTTGGAGAGGGAAGTGTTCAGAGGCCTGTCTTTTCATCCTGCCTCCACCC i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34425012 133 + 128595539 TAGTTCTCAGTGA-CTTCCCATATATATAAAGGACTTTCTTTTCTCAAAGCCAAATATAAAGCATTGGGTTTGAGCTCTCTGGGTTTGGAGAGGGAAGTGTTCAGAGGCCTGTCTTTTCATCCTGCCTCCACCC i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87909222 133 - 158406734 TAGTTCTCAGTGA-CATCTCTTACATATAAAAGACTTTCTTTTATCAAAGCCAAATATAAAGAATTGGGTTTGAGCTCTCTGGGGTTGGAGAGGGAAGAGTTCAGAGGCCTGTCCTTTCATTCTGCCTCCACCC i calJac3.chr6 C 0 C 0 s canFam3.chr19 50665718 130 + 53741614 TAGTCTTCAGTGATTTTCCCTTATATGTAAACG----TCTTTTATCGAAGCCAGATAGAAGGAGCAGAGTTTGAGCTCCTGGGGTTTGGGAAGCGGGGTGTTCAGAACCCTGCCGTCCCATCCTGCGTCCAGTC i canFam3.chr19 C 0 C 0 e mm10.chr2 49752511 463 + 182113224 I a score=496631.000000 s hg38.chr2_GL582966v2_alt 80373 145 + 96131 CTGACTTTGGACACCATCTAGCCTCTGTGTCTCCCATGACACCTCTGAGGTACCTCTGTGGACCTG-----------------AAAGTGGACACCACTGAGCTGGTTCAAGTCCTTTATTTTTACAGATGGGGAAACAGACTGGTGCCTTGCTTCATTGCAC s panTro4.chr2B 153193173 145 + 247518478 CTGACTTTGGACACCAACTAGCCTCTGTGTCTCCCATGACACCTCTGAGGTACCTCTGTGGACCTG-----------------AAAGTGGACACCACTGAGCTGGTTCAAGTCCTTTATTTTTACAGATGGGGAAACAGACTGGTGCCTTGCTTCATTGCAC i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38399865 145 + 135000294 CTGACTTTGGACACCAACTAGCCTCTGTGTCTCCCATGACACCTTTGAGGTACATCTGTGGACCTG-----------------AAAGTGGACACCACTGAGCTGGTTCAAGTCCTTTATTTTTACAGATGGGGAAACAGACTGGTGCCTTGCTTCATTGCAC i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82352632 144 - 85365473 C-GACTTTGGACACCAACTAGCCTCTGTGTCTCCCATGACACCTCTGAGGTACCTCTCTGGACCTG-----------------AAAGTGGACACCACTGAGCTGGTTCAAGTCCTTTATTTTTACAGATGGGGAAACAGACTGGTGCCTTGCTTCATTGCAC i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11964229 162 + 106825570 CTGACTTTGGACACCAACTAGCCTCCGTGTCTCCCATAACACCTCTGAGGTACCTCTGTGGACCTGAAAGCTCcacagaatgcaaagtggaccccactgagctggttcaagtcctttatttttacagatggggaaacagactggtgccttgcttcattgcac i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37667698 162 + 132586672 CTGACTTTGGACACCAACTAGCCTCCGTGTCTCCCATAACACCTCTGAGGTACCTCTGTGGACCTGAAAGCTCCACAGAATGCAAAGTGGACCCCACTGAGCTGGTTCAAGTCCTTTATTTTTACAGATGGGGAAACAGACTGGTGCCTTGCTTCATTGCAC i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11324885 162 + 104110932 CTGACTTTGGACACCAACTAGCCTCCGTGTCTCCCATAACACCTCTGAGGTACCTCTGTGGACCTGAAAGCTCCACAGAATGCAAAGTGGACCCCACTGAGCTGGTTCAAGTCCtttatttttacagatggggaaacagactGGTGCCTTGCTTCATTGCAC i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34425145 162 + 128595539 CTGACTTTGGACACCAACTAGCCTCCGTGTCTCCCATACCACCTCTGAGGTACCTCTGTGGACCTGAAAGCTCCACAGAATGCAAAGTGGACCCCACTGAGCTGGTTCAAGTCCTTTATTTTTACAGATGGGGAAACAGACTGGTGCCTTGCTTCATTGCAC i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87909355 154 - 158406734 CTGACTTTGGACACCAACTAGCCTCTGTATCT--------AGCTCCGTGGTACCTCTGTGGACCTGAAGGCTCCATAGAATGCAAAGTGGACACCACTGAGCTGGTTCAAGTCTTTTATTTTTACAGAAGGGGAAACAGACTGGTGCCTTGCTTCATCGCGC i calJac3.chr6 C 0 C 0 s mm10.chr2 49752974 147 + 182113224 CTACCCTTGGATACTGACTGGCCTTGTGCTCTCCCATGGCATCTCTTAGACTTCTCTGTAGAGCAGAAGTCTCCATAGAGTG-CATCTGCTGACCACT---CTGGTTCTGGTCCCTCA-GTTTGCATCTAAGGAGA----------CTTTACTTCCTTTCAC i mm10.chr2 I 463 I 386 s canFam3.chr19 50665848 93 + 53741614 -----------------CCAGCC----------------------------------GCAGACCCACAGGCTGCGCAGAATGCAAAGGGGATACCACCGAGctgattcaggtcccttatttttgcagatgaggaaacagagcag------------------ i canFam3.chr19 C 0 C 0 a score=8764.000000 s hg38.chr2_GL582966v2_alt 80518 3 + 96131 CGT s panTro4.chr2B 153193318 3 + 247518478 CGT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38400010 3 + 135000294 CGT i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82352776 3 - 85365473 CGT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11964391 3 + 106825570 cgt i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37667860 3 + 132586672 CGT i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11325047 3 + 104110932 CGT i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34425307 3 + 128595539 CGT i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87909509 3 - 158406734 AGT i calJac3.chr6 C 0 C 0 e canFam3.chr19 50665941 0 + 53741614 C e mm10.chr2 49753121 386 + 182113224 I a score=1445327.000000 s hg38.chr2_GL582966v2_alt 80521 409 + 96131 GGGAGGACC--GGGACTGGAACCAGCACCCTCTCTGCTC-AGCTG-CCC-ATTCCT-----AGCGA--------TCTCAGATGCTCTCTCGGATGCCTGCGATGTGCTGGCATTTGTCTAGAGTGACAGAGAGTGATAACTGTGTCCAAACTCACCAGTGATTTCAGCAGGTCATTTGTCTTGGATACTTTCTTTTTAAATGTTGGTGTGTGCATGGCTGTTTTCCC----TCTTTAGGAATTGGGATATGATGGAAACGGCCCAAGTTTTTAGACCACATGGCCGAGGAGATGTCATTTCTCTTTGACTTGTTAAGTCTTCTTCAATATTACTGATGATGGCATT---TTTTCCCCAGAGAGAGGATGATAGATTCTAGATAGTTGAAGTCACTCAAACAAATTGTCGATGAGAAATACGAAAGCAGAAACTG s panTro4.chr2B 153193321 409 + 247518478 GGGAGGACC--GGGACTGGAACCAGCACCCTCTCTGCTC-AGCTG-CCC-ATTCCT-----AGCGA--------TCTCAGATGCTCTCTCGGGTGCCTGCGATGTGCTGGCATTTGTCTAGAATGTCAGAGAGTGATAACTGTGTCCAAACTCACCAGTGATTTCAGCAGGTCATTTGTCTTGGATACTTTCTTTTTAAATGTTGGTGTGTGCATGGCTGTTTTCCC----TCTTTAGGAATTGGGATGTGATGGAAACGGCCCAAGTTTTTAGACCACATGGCCGAGGAGATGTCATTTCTCTTTGACTTGTTAAGTCTTCTTCAATATTACTGATGATGGCATT---TTTTCCCCAGGGGGAGGATGATAGATTCTAGATAGTTGAAGCCACTCAAACAAATTGTTGATGAGAAATACAAAAGCAGAAACTG i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38400013 409 + 135000294 GGGAGGACC--GGGACTGGAACCAGCACCCTCTCTGCTC-AGCTG-CCC-ATTCCT-----AGCGA--------TCTCAGATGCTCTCTCGGATGCCTGCGATGTGCTGGCATTTGTCTAGAGTGACAGAGAGTGATAACTGTGTCCAAACTCACCAGTGATTTCAGCAGGTCATTTGTCTTGGATACTTTCTTTTTAAATGTTGGTGTGTGCATGGCTGTTTTCCC----TCTTTAGGAATTGGGATGTGATGGAAACGGCCCAAGTTTTTAGACCACATGGCCGAGGAGATGTCATTTCTCTTTGACTTGTTAAGTCTTCTTCAATATTACTGATGATGGCATT---TTTTCCCCAGAGGGAGGATGATAGATTCTAGATAGTTGAAGCCACTCAAACAAATTGTCGATGAGAAATATGAAAGAAGAAACTG i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82352779 409 - 85365473 GGGAGGACC--GGGACTGGAACCAGCACCCTCTCTGCTC-AGCTG-CCC-ATTCCT-----AGCGA--------TCTCAGATGCGCTCTCGGATGCCTGCGATGTGCTGGCATTTGTCTAGAGTGACAGAGAGTGATAACTGTGTCCAAACTCACCAGTGATTTCAGCAGGTCATTTGTCTTGGATACTTTCTTTTTAAATGTTGGTGTGTGCATGGCTGTTTTCCC----TCTTTAGGAATTGGGATGTGATGGAAACGGCCCAAGTTTTTAGACCACATGGCCGAGGAGATGTCATTTCTCTTTGACTTGTTAAGTCTTCTTCAGTATTACTGATGATGGCATT---TTTTCCCCAGAGGGAGGATGATAAATTCGAGATAGTTGAAGCCACTCAAACAAATTGTCGATGAGAAACACGAAAGCAGAAACTG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11964394 405 + 106825570 gagaggacc--aggactggaaccagcaccctctctgctc-agctg-ccc-attcct-----agcga--------tctcagatgctcaCTCGGGTGCCTGCGATGCGCTGGCATTTGTCTAGAGTGACAGAGAGTGATAACTGTGTCCAAACTCACCAGTGATTTCAGCAGGTCATTTGTCTTGGATACTTTCTTTTTAAATGTTGGTGTGTGCATGGCTGTTTTCCC----TCCTTAGGAATTGGGATGTGATGGAAACGTCCCAAGTTTTTGGACCACATGGCCAAGGAGATGTCATTTCTCTTTGACTTGTGAAGACTTTTTCAATATTACTGATGATGGCGTT---TTTTCCCCAGAGGGAGGATAATAGATTCTAGAGAGTTGAAGCCACT----CAAATTGTCGATGAGAAATACAAAAGCAGGAACTG i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37667863 405 + 132586672 GAGAGGACC--AGGACTGGAACCAGCACCCTCTCTGCTC-AGCTG-CCC-ATTCCT-----AGCGA--------TCTCAGATGCTCACTCGGGTGCCTGCGATGCGCTGGCATTTGTCTAGAGTGACAGAGAGTGATAACTGTGTCCAAACTCACCAGTGATTTCAGCAGGTCATTTGTCTTGGATACTTTCTTTTTAAATGTTGGTGTGTGCATGGCTGTTTTCCC----TCCTTAGGAATTGGGATGTGATGGAAACGTCCCAAGTTTTTGGACCACATGGCCAAGGAGATGTCATTTCTCTTTGACTTGTGAAGACTTTTTCAATATTACTGATGATGGCGTT---TTTTCCCCAGAGGGAGGATAATAGATTCTAGAGAGTTGAAGCCACT----CAAATTGTCGATGAGAAATACAAAAGCAGGAACTG i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11325050 405 + 104110932 GAGAGGACC--AGGACTGGAACCAGCACCCTCTCTGCTC-AGCTG-CCC-ATTCCT-----AGCGA--------TCTCAGATGCTCACTCGGGTGCCTGCGATGCGCTGGCATTTGTCTAGAGTGACAGAGAGTGATAACTGTGTCCAAACTCACCAGTGATTTCAGCAGGTCATTTGTCTtggatactttctttttaaatgttggtgTGTGCATGGCTGTTTTCCC----TCCTTAGGAATTGGGATGTGATGGAAACGTCCCAAGTTTTTGGACCACATGGCCAAGGAGATGTCATTTCTCTTTGACTTGTGAAGACTTTTTCAATATTACTGATGATGGCGTT---TTTTCCCCAGAGGGAGGATAATAGATTCTAGAGAGTTGAAGCCACT----CAAATTGTCGATGAGAAATACAAAAGCAGGAACTG i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34425310 405 + 128595539 GAGAGGACC--GGGACTGGAGCCAGCACCCTCTCTGCTC-AGCTG-CCC-ATTCCT-----AGCGA--------TCTCAGATGCTCACTCGGGTGCCTGCAATGCGCTGGCATTTGTCTAGAGTGACAGAGAGTGATAACTGTGTCCAAACTCACCAGTGATTTCAGCAGGTCATTTGTCTTGGATACTTTCTTTTTAAATGTTGGTGTGTGCATGGCTGTTTTCCC----TCTTTAGGAATTGGGATGTGATGGAAATGTCCCAAGTTTTTGGACCACATGGCCAAGGAGATGTCATTTCTCTTTGACTTGTGAAGACTTTTTCAATATTACTGATGATGGCGTT---TTTTCCCCAGAGGGAGGATAATAGATTCTAGAGAGTTGAAGCTACT----CAAATTGTCAATGAGAAATACAAAAGCAGGAACTG i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87909512 408 - 158406734 GGGAGGACT--AGGACTTGGACCAGCACCCTCTCTGCCCAAATTG-CCC-ATTCCT-----AGTGC--------TATCAGACGCTCTCTCGGATGCCTGCGATGCGCTGGCATTTGTCTAGAGTGACAGAGAGTGATAACTGTGTCCAAACCCATCAGTGATTTTGGCAGGTCATTTGTCTTGGATACTTTCCGTTTAAATGTTGGTATGTTCACGGCTGCTTTCCC----TCTTTAGGACTTAGGATATGATGGAAACGGCCCAAGTTTTTGAACCACATGACTGA-GACATGTCATTTCTCTTTGACTTGTTAAGTCTTCATCAATATTACTGATGATGGCATTTTGTTTTACCCAGAGGGAGGATGATAGCGTCAAGATGGTTGACGCCATT----CAAATTGATGATGAGAAATACAAAAGCAAAAACTA i calJac3.chr6 C 0 C 0 s mm10.chr2 49753507 387 + 182113224 GGTGGGACCCAGAGACTGGAACCAGCATCTTCTGAGCTC-TGTTGTCCT-AATCCTACCTCAGCCA--------TCTTGGGTGTCCCTTAGAAT-----CATTGTTCTGACGTCTGTCCAGTGTGACAGAGAGGAATGAGTATGTCC-AGTAAACCAGTGATTTAGGTAAGCCATTTGCCCC---TCCTTTC--TATAAATGCCAGCATGTCTGGGACT--CTTCCC----TCTTTAGGGTTTGGTATGGGGTACAAACGGTCTAATTCTTTTGGCTAC------------ATGTCACTTCTC-TTGACATGCTAGATCTGTTTCCATAGGGCTGGTGATGGCA-----TTTTCCCCAGAGAGAAGATGGCAGA-TCAATATAG-TGAAATCATTCAAGCAAATTGATAATGAGAAATACAGAAGCAAAGACTG i mm10.chr2 I 386 C 0 s canFam3.chr19 50665941 400 + 53741614 gagaggaag--tgacct--accTCGCCTCCTCTCGGCCC-CGTCG-CCCTGTTTCT-----CGGGCATCCTATTTCTTGGGCACCGTCTCTGGTTCTTGTGATGCTCCGGAGTTTATGTAGAGGGGCAGCAAAGGGCA----TGGCCAGACCTGCTGGTGATCTAGGCA-GTTGTTGGTCTC-----CTTTCTGTATAAATAGTGGAATGTTC----CTGTTTCCCCTAAATCCTAAAGATTTATAATGTGATAAAAACGGTCCAAGTTGTTGGACCTCGTGG-TGAGGGGATGT-GTCTCTCTTGGGCCT---AAGTTCCCTTCAGCGTGACCGAGGATGGCAT----TTTCCCCCAAAGGCTGGCAGGTTCAATCAACATGGTGGCAGTGATTCAAGCAAGTTATCAATGGGAAATACATAAGCAGAAACTG i canFam3.chr19 C 0 I 40 a score=97520.000000 s hg38.chr2_GL582966v2_alt 80930 37 + 96131 TCAGGGAGCTTGAAATAGGGCTCTGAGATGCAT-TTTT s panTro4.chr2B 153193730 37 + 247518478 TCAGGGAGCTTGAAATAGGGCTCTGAGATGCat-tttt i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38400422 37 + 135000294 TCAGGGAGCTTGAAATAGGGCTCTGAGATGCat-tttt i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82353188 37 - 85365473 TCAGGGAGCTTGAAATAGGGCTCTGAGATGCAT-TTTT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11964799 38 + 106825570 CCAGGGAGCTTGAAATAGGGCTCTGAGATACATGTTTT i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37668268 38 + 132586672 CCAGGGAGCTTGAAATAGGGCTCTGAGATACATGTTTT i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11325455 38 + 104110932 CCAGGGAGCTTGAAATAGGGCTCTGAGATACatgtttt i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34425715 38 + 128595539 CCAGGGAGCTTGAAATAGGGCTCTGAGATACATGTTTT i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87909920 22 - 158406734 CCAGAGAGGT-------------TGAGATGCATGG--- i calJac3.chr6 C 0 C 0 s mm10.chr2 49753894 37 + 182113224 CCAGGCATCTTGAAATCTGGCTCTGCAACTCAT-TATT i mm10.chr2 C 0 I 2854 e canFam3.chr19 50666341 40 + 53741614 I a score=25818.000000 s hg38.chr2_GL582966v2_alt 80967 14 + 96131 AAAA------TTTATTTTTA s panTro4.chr2B 153193767 14 + 247518478 aaaa------tttattttta i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38400459 14 + 135000294 taaa------tttattttta i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82353225 14 - 85365473 TAAA------tttattttta i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11964837 14 + 106825570 ACAA------tttattttta i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37668306 14 + 132586672 ACAA------tttattttta i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11325493 20 + 104110932 acaatttatttttattttta i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34425753 14 + 128595539 ACAa------tttattttta i chlSab2.chr10 C 0 I 180 e canFam3.chr19 50666341 40 + 53741614 I e calJac3.chr6 87909942 0 - 158406734 C e mm10.chr2 49753931 2854 + 182113224 I a score=18042.000000 s hg38.chr2_GL582966v2_alt 80981 47 + 96131 TTTAtttttgttttttttaatgttt-tttttttttttttgaggcagag s panTro4.chr2B 153193781 48 + 247518478 tttatttttgttttttttaatgtttgtttttttttttctgaggcagag i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38400473 43 + 135000294 tttatttttattttttttaat-----tttttttttttttgaggcagag i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82353239 35 - 85365473 tt--------tttatttaaaa-----aaattttttttttgaggcggag i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11964851 23 + 106825570 -------------------------tttatttattttttgagctggaa i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37668320 23 + 132586672 -------------------------tttatttattttttgagctggaa i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11325513 23 + 104110932 -------------------------tttatttattttttgagctggaa i papAnu2.chr12 C 0 C 0 s calJac3.chr6 87909942 32 - 158406734 ---------Gttttttttgtt-----ttgttttgtttttgagacag-- i calJac3.chr6 C 0 C 0 e canFam3.chr19 50666341 40 + 53741614 I e mm10.chr2 49753931 2854 + 182113224 I e chlSab2.chr10 34425767 180 + 128595539 I a score=817245.000000 s hg38.chr2_GL582966v2_alt 81028 286 + 96131 tcttgctctgtcgcccaggctggagtgcagtggtgcgatctctgctcagtgcaacctctgcctcctgggttcaagagattctcctgcctcagcctcccgagtagctgggattacaggtgcgcgccaccactcctggctaa-tttttttgtatttttagtagagacaaggtttcaccatgttggtcaggctggtcttgaaccactgacctcgtgatccgcccaccttgacctcccaaagtgctggaattacagacgtgagccactgcacccagcTGAAATGCATTATC s panTro4.chr2B 153193829 286 + 247518478 tcttgctctgtcacccaggctggagtgcagtggtgcgatctctgctcagtgcaacctctgcctcctgggttcaagagattctcctgcctcagcctcccgagtagctgggattacaggtgcgcgccaccactcctggctaa-tttttttgtatttttagtagagacaaggtttcaccatgttggtcaggctggtcttgaaccactgacctcgtgatccgtccaccttgacctctcaaagtgctggaattacagacgtgagccactgcacccagcTGAAATGCATTATC i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38400516 285 + 135000294 tcttgctctgtcgcccaggctggagtgcagtggtgtgatctctgctcagtgcaacctctgcctcct-ggttcaagagattctcctgcctcagcctcctgagtagctgggattacaggtgcgcgtcaccactcctggctaa-tttttttgtatttttagtagagagaaggtttcaccatgttggtcaggctggtcttgaaccactgacctcgtgatccgcccaccttgaccttccaaagtgctggaattacaggcgtgagccactgcacccagctGAGATGCATTATC i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82353274 287 - 85365473 gcttgctctgtcgcccaggctggagtgcagtggcacgatctctgctcagtgcaacttctgcctcctgggttcaagagattctcctgcctcagcctcccaagtagctgggattacaggtgtgcgccaccactcctggctaattttttttgtatttttagtagagacaaggtttcaccatgttggtcaggctggtcttgaaccactgacctcgtgatccgcccacctcgacctcccaaagtgctggaattacaggcatgagccactgcacccagcTGAGATGCATTATC i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11964874 285 + 106825570 tcttgctctgttgcccaggctggagtgcaatagtgcgatctctgctcagtgcaacctctgcctcctgggttcgagcgattcttctgcctcagtctcccgagtagctgggattacaggcgtgcgccaccatgcctggctaa--ttttttgtatttttattagacccaaggtttcaccatgttggtcaggctggtcttgaacccctgaccttgtgatctacccatctcagcctcccaaagtgctggaatttcaggcgtgagcgactgcacccagcTGAGATGCATTATT i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37668343 285 + 132586672 tcttgctctgttgcccaggctggagtgcaatagtgcgatctctgctcagtgcaacctctgcctcctgggttcgagcgattcttctgcctcagtctcccgagtagctgggattacaggtgtgcgccaccatgcctggctaa--ttttttgtatttttagtagacccaaggtttcaccatgttagtcaggctggtcttgaacccctgaccttgtgatctacccatctcagcctcccaaagtgctggaatttcaggcgtgagccactgcacccagcTGAGATGCATTATT i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11325536 285 + 104110932 tcttgctctgttgcccaggctggagtgcaatagtgcgatctctgctcagtgcaacctctgcctcctgggttcgagcgattcttctgcctcagtctcccgagtagctgggattacaggtgtgcgccaccatgcctggctaa--ttttttgtatttttagtagacccaaggtttcaccatgttggtcaggctggtcttgaacccctgaccttgtgatctacccatctcagcctcccaaagtgctggaatttcaggcgtgagccactgcacccagcggagatgcattatt i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34425947 284 + 128595539 tcttgctctgttgcccaggctggagtgcaatagtacgatctctgctcagtgcaacctctgcctcctgggttcgagcgattcttctgcctctgtctcccaagtagctgggattacaggtgtgcgccaccatgcctggccaa---tttttgtatttttagtagagccaaggtttcaccatgttggtcaggctggtcttgaacctctgacctcgtgatctactcatctcagcctcccaaagtgctggaatttcaggcgtgagccactgcacccagcTGAGATGCATTATT i chlSab2.chr10 I 180 C 0 s calJac3.chr6 87909974 285 - 158406734 tcttgctctgtcacccaggctggaatgcaatggtgtgatctccacttaccacagcctccgcctcctgggttcaggtgattcttctgcctcagccttctgagtagctgggattacaggtatttgacactactcccagctaa--ttttttgtatttttagtagagactgggtttcaccatgttgactaggctggtctcgacctcctgacctcgtgattcgcctgcctctgcctcccaaagtgctgggagtaaaggcctgagccgtcgtgcctggccAAGATGCATTATT i calJac3.chr6 C 0 C 0 e canFam3.chr19 50666341 40 + 53741614 I e mm10.chr2 49753931 2854 + 182113224 I a score=544778.000000 s hg38.chr2_GL582966v2_alt 81314 158 + 96131 TTattcatggattgaacgagcatttattaaaaatgtactctctgccaggcactagagctggtgctaggagaac----------aaagcagg---agacccagcagtagctcactttggtgtagCACTTTGTGATTTTCAAAAC-TCCCTCCATCCATCTGGGTCC----------CCTatta s panTro4.chr2B 153194115 158 + 247518478 TTattcatggattgaatgagcatttattaaaaatgtactctctgccaggcactagagctgatgctaggagaac----------aaagcagg---agacccagcagtagctcactttggtgtagCACTTTCTGATTTTCAAAAC-TCCCTCCATCCACCTGGGTCC----------CCTatta i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38400801 158 + 135000294 TTattcatggattgaatgagcatttattaaaaatgtactctctgccaggcactagagctggtgctaggagaac----------aaagcagG---AGACCCAGCAGTAGCTCACTTTGGTGTAGCACTTTCTGATTTTCAAAAC-TCCCTCCATCCACCTGGATCC----------CTTatta i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82353561 158 - 85365473 TTATTCATGGATTGAATGAGCATTTATGAAAAATGTACTCTCTGCCAGGCACTACAGCTGGTGCTAGGAGAAC----------AAAGCAGG---AGACCCAGCAGTAGCTCACTTTGGTGTGGTACTTTCTGATTTTCAAAAC-TCCCTCCATCCATATGGATCC----------Cctatta i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11965159 158 + 106825570 TTattcatggattgaatgagcatttgttaaaaacgtactctctgccaggcactagagctggtgctaggagaac----------aaagcagG---AGATTCAGCAGTAGCTCACTTTGGTGTAGCACTTTCTGATTTTCAAAAC-TCCCTCCGTCCACCTGGATCC----------CCtatta i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37668628 158 + 132586672 TTattcatggattgaatgagcatttgttaaaaacgtactctctgccaggcactagagctggtgctaggagaac----------aaagcagG---AGATTCAGCAGTAGCTCACTTTGGTGTAGCACTTTCTGATTTTCAAAAC-TCCCTCCGTCCACCTGGATCC----------CCTatta i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11325821 158 + 104110932 ttattcatggATTGAATGAGCATTTGTTAAAAACGTACTCTCTGCCAGGCACTAGAGCTGGTGCTAGGAGAAC----------AAAGCAGG---AGATCCAGCAGTAGCTCACTTTGGTGTAGCACTTTCTGATTTTCAAAAC-TCCCTCCGCCCACCTGGATCC----------CCTATTA i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34426231 158 + 128595539 TTattcatggattgaatgagcatttgttaaaaacgtactctctgccaggcactagagctggtgctaggagaac----------aaagcagG---AGATCCAGCAGTAGCTCACTTTGGTGTAGCACTTTCTGATTTTCAAAAC-TTTCTCCGTCCACCTGGATCC----------CCtatta i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87910259 158 - 158406734 TTattcatgaattgaatgaacatttattaagaacctattctctgccagggactagagctggtgcttggagaac----------aaagcagG---AGACCCAGCAGGAGTACACTTTGCTGTAGCACTTTCTGATTCTCAAAAC-TTTCTCCATCCACCGGGATCC----------CCTatta i calJac3.chr6 C 0 C 0 s canFam3.chr19 50666381 181 + 53741614 TTattcatgaattcagtgggtgtttattgaaaacctgctctctgcccggcactggagctggtgcccgggatacgggggtaaggaatgcagGTGTGGACTCGG-GGTAGGttaccttagttcagcactttctgattttcaagacttttctggatccactgggattcacacaatggtcctctta i canFam3.chr19 I 40 C 0 e mm10.chr2 49753931 2854 + 182113224 I a score=463090.000000 s hg38.chr2_GL582966v2_alt 81472 135 + 96131 tgtagtacacttgtgttatagatgagaaacttgagacttgtggtggtcaaatgacttacaccaagtcagatggccaggacataa-agagctggcccttgagcccactcctacctAGGGCTGGGCTGTTGCTTCTTC--- s panTro4.chr2B 153194273 135 + 247518478 tgtagtacacttgtgttatagatgagaaacttgagacttgtggtggtcaaatgacttacaccaagtcagatggccaggacataa-agagctggcccttgagcccactcctacctAGGGCTGGGCTGTTGCTTCTTC--- i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38400959 135 + 135000294 tgtagtacacttgtgttatagatgagaaacttgagacttgtggtggtcaaatgacttaggccaagtcagatggccaggacataa-agagctggcccttgagcccactcctacctAGGGCTGGCCTGTTGCTTCTTC--- i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82353719 135 - 85365473 tgtcgtacacttgtgttatagatgagaaacttgagacctgtggtggtcaaatgacttatgccaagtcagatggccaggacgtaa-agagctggcccttgagcccactcctacctagggctggcctggtgcttcttc--- i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11965317 135 + 106825570 tgtagtacacttgtgttatcgatgagaaacttgagacttgtggtggtcaaatgacttatgccaagtcacatggccaggacataa-agagctggcccttgaacccactcctacctagggctggcctgttgcttcttc--- i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37668786 135 + 132586672 tgtagtacacttgtgttatcgatgagaaacttgagacttgtggtggtcaaatgacttacgccaagtcacatggccaggacataa-agagctggcccttgaacccactcctacctAGGGCTGGCCTGTTGCTTCTTC--- i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11325979 135 + 104110932 TGTAGTACACTTGTGTTATCGATGAGAAACTTGAGACTTGTGGTGGTCAAATGACTTACGCCAAGTCACATGGCCAGGACATAA-AGAGCTGGCCCTTGAACCCACTCCTACCTAGGGCTGGCCTGTTGCTGCTTC--- i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34426389 135 + 128595539 tgtagtacacttgtgttatcgatgagaaacttgagacttgtggtggtcaaatgacttacgccaagtcagatggccaggacataa-agagctgacctttgaacccactcctacctAGGGCTGGCCTGTTGCTTCTTC--- i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87910417 129 - 158406734 tatagtacacttgtgttacagatgagaaacttgaggctt---gtggtcaaatgacttacaccaagtcagatggccaggacataa-agagctggcccttgagcccactcctATCAAGGGCTGGCCTAT---TTCTTC--- i calJac3.chr6 C 0 C 0 s mm10.chr2 49756785 121 + 182113224 TATGGTCCTTTCATTTTATGAAGGCAACACCCAAGACTTGGAGTGGCTCAGCTCCTACCACCAAGTCAGATGG-CAGGAATGGT-AGCATTGACATTGGAGTCCTCCATTACCTAGGG-------------TCCTA--- i mm10.chr2 I 2854 C 0 s canFam3.chr19 50666562 133 + 53741614 tata-cgctccctttttatgggtgagaaacctgagacgcgtagaggttggaggactta--ccaagtcagat-gtcaggaaataacagagccggctcttgagccaggGCAAACCTGTTGCTG--CTGCTGCTGCTTTTCt i canFam3.chr19 C 0 I 301 a score=162149.000000 s hg38.chr2_GL582966v2_alt 81607 59 + 96131 AATCAGCAAAAAGGCGCAGTCTCCTCCTCTTA--CCTT---AGCCTCTGGATGTGTTGCAAAGC s panTro4.chr2B 153194408 59 + 247518478 AATCAGCAAAAAGGCGCAGTCTCCTCCTCTTA--CCTT---AGCCTCTGGATGTGTTGCAAAGC i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38401094 59 + 135000294 AGTCAGCAAAAAGGCGCAGTCTCCTCCTCTTA--CCTT---AGCCTCTGGATGTGTTGCAAAGC i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82353854 58 - 85365473 AGTCAGCAGAAAGGCGCAGTCTCCTCCTCTT---CCTT---AGCTTCTGGATGTGTTGCAAAGC i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11965452 54 + 106825570 AGTCAGCAAAAAGGCGCAGTCTCTTCCTCTT----------AGCCTCTGGATGTGTTGCAAAGC i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37668921 54 + 132586672 AGTCAGCAAAAAGGCGCAGTCTCTTCCTCTT----------AGCCTCTGGATGTGTTGCAAAGC i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11326114 54 + 104110932 AGTCAGCAAAAAGGCGCAGTCTCTTCCTCTT----------AGCCTCTGGATGTGTTGCAAAGC i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34426524 54 + 128595539 AGTCAGCGAAAAGGCGCAGTCTCTTCCTCTT----------AGCCTCTGGATGTGTTGCAAAGC i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87910546 61 - 158406734 AGGCAGCAAAAAGGTGCCGTCTCCTCCTCTTACCCCTT---GGCCTCTGGTTATGTTGTGAAGC i calJac3.chr6 C 0 C 0 s mm10.chr2 49756906 59 + 182113224 AGTAAAAAGGAGCAAACAGTTCCCTCCTGTT---TCTTGCGAGCCTCAGGATATGT--CTGAGC i mm10.chr2 C 0 C 0 e canFam3.chr19 50666695 301 + 53741614 I a score=6126670.000000 s hg38.chr2_GL582966v2_alt 81666 1842 + 96131 TGGGTCCAAACCCCATGCCAGTGTAAACAGCAGGTTCTGCATGGAAGGAAGCCCTCTGAGAGCTCAGGAACATGCTTGTTTTTCACTGAGTCCTTTCAAACCGACTTTAAGTGTTTCAGCTTTCTCATGCTAATTTAGTATTCTCAT-ATGTGGTCGATTTTCTCACACAATCCCCCTTTCCTCTACACACACCCAAACAGAAGAGGAGGTAAATCCTGCCTCAGATGGAAAGTTTCTTGTGGTGGGAAATAGGTTTTAAT----TGTATCCC-CACC-CCACCG---TTCCTTGCACCCTGTGAATCACGTGTTCAGGAACCTGGAC-CCCACAGTCTGAGTTTTCCTTTCCTTTCTGTGGTTGTACGGAGTGCCAAGGACAACCTAGCAG------GGGCCACCTGTTCAGCAGCAGGGGCTGCTTCTGGCTGCTCTGGTTTGTGCAATGCTGCCTGCCTGGTAGT----------------AACTCCCTTCCTTTATCCTC---CTGCCCCAGCTGGTCCGGGACAACGCAGACCTGCGCTGTGAACTGCCCAAGCTGGAGAAGCGGCTGCGTGCCACGGCGGAGCGCGTCAAGGCTCTGGAGAGCGCGCTGAAGGAGGCCAAGGAGAACGCCATGCGGGACCGTAAGCGCTACCAGCAGGAGGTGGATCGTATCAAGGAGGCCGTGCGGGCCAAGAACATGGCCAGAAGGGCCCATTCAGCCCAGATCGGTACGTGCGTGCACAGTGGCGCCCGGGGTTTGAGAAGCTACTGCGGCCTCTCAGCTCAGATTTGCT-AAAAGGTGAAGACAGCGCTGGCCCACTCTGGAACATCTGAAAGGCTGGGTTGGAGCCCGCAGGACGCAGCCCTCACCGC-ACCCTGTGCT------------------CACCCTGTGGGAATGGGAATGTCAGGCGCCCCCGTTATCCTACTCTGAGATATTCCAGCATACATCGTGGTCTCAAAACTTCTGAGCTGGGCAGAGAGAAGCCAGCCAAGGCTGTAGGCCTAGGTCTTGGGCTATAA--ATGGGTACACTCTTAG---AAATACTGGAATAGGAGGATATTTCTCTGCAAGGTGTGAAGGG-CCCTGTGTTCTGCACCCGGTGGGAGCATGAAGGAGCCCATATGTAGCCAG-AGCCCCAGGGAAAGCCTC---CAAGTGCAGGTTTGGAAATACCCCTGGAAGAGCCAGGCTGGCATCCATGA-CAGGGTGTGGCTACAGGCTGGCACAGAACCTGGGGAGGTCTGGAGTCTCAGCCTCTTCAAGACCTGTATGGATTTGGGCATTTTGCCCATGTAGGAAATGAGGGTGTAG-----CCA--GAGTCCTGGTTCCCAGGAT--AGCCATAGGGACAAAAACAATTTAGGAATATTCTCTAAACAGCTTCTTCTCC------------------------------------TTTTTTTTTTTTTTAAATTGAAACATCTCCAATAACATG----TAAT-TTATTTCCCATCAGATATTGCTGTGTAGATGTATTGCAAACC----AGCAGTTTCACGTTTCTAGTTTTAA-ATCATACCTTAGAATagtggttcattgcatgtgtaggatttcataccctttgagaatctattaaaagctatggaccctctccccagaaaaca-gcatcacaggcagaattct-------------------------------------------------------------gcatccaatt------------------------------------------------tcaggggctacacagatatcc------ttgaaagtcatG------------GGGAACCTAC-GATCCATT--------TCAGATGAAA------------CTGAAAATCTTTTTT-------TCTAACTTTTCTTGGCC--------------------------------CAAATTAGAAATGA-------------------------------------------------------GCTAATTGATGTTTAAGTTCTTTCTGTCCCCTAAATATTT-GGATGCCTTGGATTTGCTAAGTATACTGATAG--------TTTTCCCATTTTCAGAGAGATCTGGTGGTTGATAAGAATTGTACTGTTGGTAAGAATTGTGACTTTTAGTTGTCACAGGTGAC---- s panTro4.chr2B 153194467 1843 + 247518478 TGGGTCCAAACCCCATGCCAGTGTAAACAGCAGGTTCTGCATGGAAGGAAGCCGTCTGAGAGCTCAGGAACATGCTTGTTTTTCACTGAGTCCTTTCAAACCGACTTTAAGTGTTTCAGCTTTCTCATGCTAATTTAGTATTCTCAT-ATGTGGTCGATTTTCTCACACAATCCCCCTTTCCTCTACACACACCCAAACAGAAGAGGAGGTAAATCCTGCCTCAGATGGAAAGTTTCTTGTGGTGGGAAATAGGTTTTAAT----TGTATCCC-CACC-CCACCG---TTCCTTGCACCCTGTGAATCACGTGTTCAGGAACCTGGAC-CCCACAGTCTGAGTTTTCCTTTCCTTTCTGTGGTTGTACGGAGTGCCAAGGACAACCTAGCAG------GGGCCACCTGTTCAGCAGCAGGGGCTGCTTCTGGCTGCTCTGGTTTGTGCAATGCTGCCTGCCTGGTAGT----------------AACTCCCTTCCTTTATCCTC---CTGCCCCAGCTGGTCCGGGACAACGCAGACCTGCGCTGTGAACTGCCCAAGCTGGAGAAGCGGCTGCGTGCCACGGCGGAGCGCGTCAAGGCTCTGGAGAGCGCGCTGAAGGAGGCCAAGGAGAACGCCATGCGGGACCGTAAGCGCTACCAGCAGGAGGTGGATCGTATCAAGGAGGCCGTGCGGGCCAAGAACATGGCCAGAAGGGCCCATTCAGCCCAGATCGGTACGTGCGTGCACCGTGGCGCCCGGGGTTTGAGAAGCTACTGCGGCCTCTCAGCTAAGATTTGCT-AAAAGGTGAAGACAGCGCTGGCCCACTCTGGAACATCTGAAAGGCTGGGTTGGAGCCCGCAGGACGCAGCCCTCACCAC-ACCCTGTGCT------------------CACCCTGTGGGAATGGGAATGTCAGGCGCCCCCATTATCCTACTCTGAGATATTCCAGCATACATCGTGGTCTCAAAATTTCTGAGCTGGGCAGAGAGAAGCCAGCCAAGGCTGTAGGCCTAGGTCTTGGGCTATAA--ATGGGTACACTCTTAG---AAATACTGGAATAGGAGGATATTTCTCTGCAAGGTGTGAAGGG-CCCTGTGTTCTGCACCCGGTGGGAGCATGAAGGAGCCCATATGTAGCCAG-AGCCCCAGGGAAAGCCTC---CAAGTGCAGGTTTGGAAATACCCCTGGAAGAGCCAGGCTGGCATCCATGA-CAGGGTGTGGCTACAGGCTGGCACAGAACCTGGGGAGGTCTGGAGTCTCAGCCTCTTCAAGACCTGTATGAATTTGGGCATTTTGCCCATGTAGGAAATGAGGGTGTAG-----CCA--GAGTCCTGGTTCCCAGGAT--AGCCACAGGGACAAAAACAATTTAGGGATATTCTCTAAACAGCTTCTTCTCC-----------------------------------TTTTTTTTTTTTTTTAAATTGAAACATCTCCAATAACATG----TAAT-TTATTTCCCATCAGATATTGCTGTGTAGATGTATTGCACACC----AGCAGTTTCACATTTCTAGTTTTAA-ATCATACCTTAGAATagtggttcattgcatgtgtaggatttcatatcctttgagaatctattaaaagctatggaccctctccccagaaagca-gcatcacaggcaggattct-------------------------------------------------------------gcatccaatt------------------------------------------------tcaggggctacacagatatcc------ttgaaagtcatG------------GGGAACCTAC-GATCCATT--------TCAGATGAAA------------CTGAAAATCTTTTTT-------TCTAACTTTTCTTGGCC--------------------------------CAAATTAGAAATGA-------------------------------------------------------GCTAATTGATGTTTAAGTTCTTTCTGTCCCCTACATATTT-GGATGCCTTGGATTTGCTAAGTATACTGATAG--------TTTTCCCATTTTCAGAGAGATCTGGTGGTTGATAAGAATTGTACTGTTGGTAAGAATTGTGACTTTTAGTTGTCACAGGTGAC---- i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38401153 1841 + 135000294 TGGGTCCAAACCCCATGCCAGTGTAAACAGTAGGTTCTGCATGGAAGGAAGCCCTCTGAGAGCTCAGGAACATGCTTGTTTTTCACTGAGTCCTTTCCAACCGACTTTAAGTGTCTCAGCTTTCTCATGCTAATTTACTATTCTCAT-ACGTGGTTGATTTTCTCACACACTCCCCCTTTCCTCTACACACACCCAAACAGAAGAGGAGGTAAATCTTGCCTCAGATGGAAAGTTTCTTGTGGTGGGAAATAGCTTTTAAT----TGTATCCC-CACC-CCACCG---TTCCTTGCACCCCGTGAATCACGTGTTCAGCAACCCGGAC-CCCACAGTCTGAGTTTTCCTTTCCTTTCTGTGGTTGTACGGAGTGCCAAGGACGACCTAGCGG------GGGCCACCTGTTCAGCAGCAGGGGCTGCTTCTGGCTGCTCTGGTTTGTGCAATGCTGCCTGCTTGGTAGT----------------AACTCCCTTCCTTTATCCTC---CTGCCCCAGCTGGTCCGGGACAACGCAGACCTGCGCTGTGAACTGCCCAAGCTGGAGAAGCGGCTGCGTGCCACCGCGGAGCGCGTCAAGGCGCTGGAAAGCGCGCTGAAGGAGGCCAAGGAGAACGCCATGCGGGACCGTAAGCGCTACCAGCAGGAGGTGGATCGCATCAAGGAGGCCGTGCGGGCCAAGAACATGGCCAGAAGGGCCCATTCAGCCCAGATCGGTACGTGCGTGCACCGTGGCGCCCGGGGTTTGAGAAGCTACTGCGGCCTCCCAGCTAAGATTTGCT-AAAAGGTGAAGACAGCGCTGACCCACTCTGGAACATCCGAAAGGCTGGGTTGGAGCCCACAGGACGCAGCCCTCACCGC-ACCCTGTGCT------------------CACCCTGGGGGAATGGGAATGTCAGGCGCCCCCGTTATCCTACTCTGAGATATTCCAGCATACATCGTGGTCTCAAAACTTCTGAGCTGGGCAGAGAGAAGCCAGCCAAGGCTGTAGGCCTAGGTCTTGGGCTATAA--ATGGGTACACTCTTAG---AAATACTGGAATGGGAGGAGATTTCTCTGCAAGGTGTGAAGGG-CCCTGTGTTCTGCACCCGGTGGGACCATGAAGGAGCCCATGTGTAGCCAG-AG-CCCAGGGAAAGCCTC---CAAGTGCAGGTTTGGAAATATCCCTGGAAGAGCCAGGCTGGCATCCATGA-CAGGGTGTGGCTACAGGCTGGCACAGAACCTGGGGAGGTCTGGAGTCTCAGCCTCTTCAAGACCTGTATGGATTTGGGCATTTTGCCCATGTAGGAAATGAGGGTGTAG-----CCA--GATTCCTAGTTCCCAGGAT--AGTGATAGGGATAAAAACAATTTAGGGATATTCTCTAAATAGCTTCTTCTCC---------------------------------tttttttttttttttttaaatCGAAACATCTCCAGTAACATG----TAAT-TTATTTCCCATCAGATATTGCTGTGTAGATGTATTGTAAACC----AGCAGTTTCACGTTTCTAGTTTTAA-ATCATACCTTAGAATAGTGGTTCATTGCATGCGTAGGATTTCATAccctttgagaatctattaaaagctatggaccctctccccagaaaaca-gcatcaaaggcagaattct-------------------------------------------------------------gcatccaatt------------------------------------------------tcagggtctacacagatatcc------ttgaaagtcatG------------GGGAACCTAC-GATCCATT--------TCAGATAAAA------------CTGAAAATCTTTTTT-------TCTAACTTTTCTTGGCC--------------------------------CAAATTAGAAATGA-------------------------------------------------------GCTAATTGATGTTTAAGTTCTTTCTGTCCCCTAAATATTT-GGATGCCTTGGATTTGCTAAGTATAC-GGTAG--------TTTTCCCATTTTCAGAAAAATCTGGTGGTTGATAA-AATTGTACCGTTGAC-AGAATTGTGACTTTTAGTTGTCACAATTGAC---- i ponAbe2.chr2b C 0 I 164 s nomLeu3.chr20 82353912 1840 - 85365473 TGGGTCCAAACCCCATGCCAGTGTGAACAGCAGGTTCTGCATGGAAGGAAGCCCTCTGAGAGCTCAGGAACACGCGCGTTTTTCACTGAGTCCTTTCGGACCGACTTTAAGTGCTTCAGCTTTCTCATGCTAATTTACTATTCTCAT-ACGTGGTCGATCTTCTCACACCATCCCCCTTTCCTCTACACACACCCAAACAGAAGAGGAGGTAAATCCTGCCTCAGATGGAAAGTTTCTTGGGGTGGGAAATAGCTTTTAAT----TGCATCCC-CACC-CCACCG---TTCCTTGCACCCCGTGAATCACGTGTTCAGCAACCCGGAC-CCCACAGTCTGAGTTTTCCTTTCCTTTCTGTGGTTGTAGGGAGTGCCAAGGACGACCATTCGG------GGGCCACCTGTTCAGTAGCAGGGGCTGCTTCTGGCTACTCTGGTTTGTGCAATGCTGCCTGCCTGGTAGT----------------AACTCCCTTCCTTTATCCTC---CTGCCCCAGCTGGTCCGGGACAACGCAGACCTGCGCTGTGAACTGCCCAAGCTGGAGAAGCGGCTGCGTGCCACGGCGGAGCGCGTCAAGGCGCTGGAGAGCGCGCTGAAGGAGGCCAAGGAGAATGCCATGCGGGACCGTAAGCGCTACCAGCAGGAGGTGGATCGCATCAAGGAGGCCGTGCGGGCCAAGAACATGGCCAGAAGGGCCCATTCAGCCCAGATCGGTACGTTCGTGCACCGTGGCGCCCCGGGTTTGAGAAGCTACTGCGGCCTCCCAGCTAAGATCTGCT-GAAAGGTGAAGACAGCGCTGGCCCGCTCTGGAACATCTGAAAGGCTGGGTTGGAGCCCGCAGGACGCAGCCCTCACCGC-ACCCTGTGCT------------------CACCCTTGGGGAATGGGAATGTCAGGCGCCCCCGTTATCCTACTCTGAGATATTCCAGCATACATCGTGGTCTCAAAGCTTCTGAGCTGGGCAGAGAGAAGCCAGCCAAGGCTGTAGGCCTAGGTCTTGGGCTGTAA--ATGGGTACACTCTTAG---AAATACTGGAATAGGAGGATATTTCTCTGCAAGGTGTGAAGGG-CCCTGTGTTCTGCACGCGGTGGGACCATGAAGGAGCCCATATGTAGCCAG-AG-CCCAGGGAACGCCTC---CAAGTGCAGGTTTGAAAATACTCCTGAAAGAGCCAGGCTGGCATCCGTGA-CAGGGTGTGGCTACAGGCGGGCACAGAACCTGGGGAGGTTTGGAGTCTCAGCCTCTTCAAGACCTGTATGGATTTGGGCATTTTGCCCATGTAGGAAATGAGGGTGTAG-----CCA--GAGTCCTAGTTCCTGGGGT--AGCCATAGGGATAAAAACAATTTAGGGATATTCTCTAAACAGCTTCTTCTCC------------------------------------TTTTTTTTTTTTTTAAATTGAAACATCTCCAATAACATGTAATTAAT-TTATTTCCCATCAGATATTGCTGTGTAGATGTATCGTAAACC----AGCAGTTTCACGTTTCTAGTTTTAA-ATCATACCTTAGAATagtggttcattgcatgtgtaggatttcataccctttgagaatctattaaaagctatggaccctctccccagaaaaca-gcatcacaggcagaattcg-------------------------------------------------------------gcatccaaat------------------------------------------------tgaggggctacacagatatcc------ttgaaagtcatG------------GGGAACCTAC-GATCCATT--------TCAGATACAA------------CTGAAAATCTTTTTT-------TCTAACTTTTCTTGGCC--------------------------------CAAATTAGAAATGA-------------------------------------------------------GCTAATTGATGT-----TTCTTTCTGTCCCCTAAATATTT-GGATGCCTTGGATTTGCTAAGTATACTGATAG--------TTTTCCCATTTTCAGAGAGATCTGGTGATTGATAAGAATTGTACTGCTGATAAGAATTGTGACTTTTAGTTGTCACAGGTGAC---- i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11965506 1878 + 106825570 TGGGTCCAAACCCCATGCCAGTGTAAACAGCGGGTTCTGCATGGAAGGAGGCCCTCTGAGAGCTCAGGAACATGCTTGTTTTTCACTGAGTCCTTTTGAACCGGCTTGAAGTGTCTCAGCTTTCTCATGCTAATTTACTATTCTCATAAAGTGGTTGATTTTCTCACACAATTCCCCTTTCCTCTACACACACCCAAACAAAAGAGGAGGTAAATCTTGCCTCAGATCGAAAGTTTCTTGTGGTGGGAAATAGTTTTTAAT----TGTATCCC-CACC-CCACCA---TTCCTTGCACCCCGTGAATCACGTGTTCA-----CCGGAG-TCCACAGTCTGGGTTTTCCTTTCCTTTCTGTGGTTGTGCGGAGTGCGAAGGACGACCTAGCGG------GGGTCGCCTGTTCAGCAGCAGGGGCTGCTTCTGGCTGCTCTGGTTTGCACAGTGCAGCCTGCCTGGTAGT----------------AACTCCCCTCCTTTATCCTC---CTGCCCCAGCTGGTCCGGGACAACGCAGACCTGCGTTGTGAACTGCCCAAGCTGGAGAAGCGGCTGCGTGCCACGGCGGAGCGCGTCAAGGCGCTGGAGAGCGCGCTGAAGGAGGCCAAGGAGAACGCCATGCGGGACCGCAAGCGCTACCAGCAGGAGGTGGATCGCATCAAGGAGGCCGTGCGGGCCAAGAACATGGCCAGAAGGGCCCATTCAGCCCAGATCGGTACGTGTGTGCACCGTGGCGCCCGGGGTTTGAGAAGCTACTGCGGCCTCCCAGCTAAGATTTGCTAAAAAGGTGAAGACAGCGCCAGCCCACTCTGGAACATCTGAAAGACTGGGATGGAGCCCACAGGCGGCAGCCCTCCCTGC-ACCCTATGCT------------------CACCCTGGGGGAATGGGAATGTCAGGCGCCCCCGTTATCCTATTCTGAGATACTCCGGCATCCATCGTGGTCTCAGAACTTCTGAGCTGGGCAGAGAGAAGCCAGCCAAGGCCGTAGGCCCAGGTCTTGGGCTATAA--ATGGGTACACTCTTAG---AAATACTGAAATAGGAGGATATTTCTCTGCAAGGTGTGAAGGGCCCCTGTGTTCTGCACCCGGTGGGACCATGAAGGAGCCCGTATGTAGCCAG-AGCCCCAGGGAAAGCCTC---CAAGTGCAGGTTTGGAAATACCCCGGGAAGAGCCAGGCTGGCATCCGTGA-CAGGGTGTGGCTACAGGCTGGCACAGAACCTGGGAAGGTCTGGAGTCTCAGCCCCTTCAAGACCTGTATAGATTTGGGCATTTTGCCCATGTAGGAAATGAGGGTGTAG-----CCA--GAGTCCTAGTTCCCAGGATAGAGCCATAGGGATAAAAACAATTTAGGGATATTCTCTAAACAGCTGCTTCTCCttttttttttttttttttttttttttttttttttttttttttttttttttAAATTGAAACATCTCCAATAACATG----TAAT-TTATTTCCCATCAGATATTGCTGTGTAGATGTATTGTAAACC----AGCAGCTTCATGTTTCTAGTTTTAA-ACCATACCTTAGATTagtggttcattgcatgtgtaggatttcataccctttgagaatctattaaaagctatggacgctctccccagaaaaca-gcatcacaggcagaattct-------------------------------------------------------------gcatccaatt------------------------------------------------tcaggggctacacagatgccc------ttgaaagtcatG------------GGGAACCTAT-GATCCATT--------TCAGATAAAA------------CTGAAAATCTTTTTT-------TCTAACTTTTCTTGGCC--------------------------------CAAATTAGAAATGA-------------------------------------------------------GCTAATTGATATTTAAGTTCTTTCTGTCCCCTAAATATGT-GGATGCCTTGGATTTGCTAACTATACTGATCG--------TTTTCCCATTTTCAGAGAGATCTGGTGGTTGATAAGAATAGTACTGTTGATAAGAATTGTGACTTTTAGTTGTCACAGGTGAC---- i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37668975 1845 + 132586672 TGGGTCCAAACCCCATGCCAGTGTAAACAGCGGGTTCTGCATGGAAGGAGGCCCTCTGAGAGCTCAGGAACATGCTTGTTTTTCACTGAGTCCTTTTGAACCGGCTTGAAGTGTCTCAGCTTTCTCATGCTAATTTACTATTCTCATAAAGTGGTTGATTTTCTCACACAATTCCCCTTTCCTCTACACACACCCAAACAAAAGAGGAGGTAAATCTTGCCTCAGATCGAAAGTTTCTTGTGGTGGGAAATAGTTTTTAAT----TGTATCCC-CACC-CCACCA---TTCCTTGCACCCCGTGAATCACGTGTTCA-----CCGGAG-TCCACAGTCTGGGTTTTCCTTTCCTTTCTGTGGTTGTGCGGAGTGCGAAGGACGACCTAGCGG------GGGTCGCCTGTTCAGCAGCAGGGGCTGCTTCTGGCTGCTCTGGTTTGCACAGTGCAGCCTGCCTGGTAGT----------------AACTCCCCTCCTTTATCCTC---CTGCCCCAGCTGGTCCGGGACAACGCAGACCTGCGTTGTGAACTGCCCAAGCTGGAGAAGCGGCTGCGTGCCACGGCGGAGCGCGTCAAGGCGCTGGAGAGCGCGCTGAAGGAGGCCAAGGAGAACGCCATGCGGGACCGCAAGCGCTACCAGCAGGAGGTGGATCGCATCAAGGAGGCCGTGCGGGCCAAGAACATGGCCAGAAGGGCCCATTCAGCCCAGATCGGTACGTGTGTGCACCGTGGCGCCCGGGGTTTGAGAAGCTACTGCGGCCTCCCAGCTAAGATTTGCTAAAAAGGTGAAGACAGCGCCAGCCCACTCTGGAACATCTGAAAGACTGGGATGGAGCCCACAGGCGGCAGCCCTCCCTGC-ACCCTATGCT------------------CACCCTGGGGGAATGGGAATGTCAGGCGCCCCCGTTATCCTATTCTGAGATACTCCGGCATCCATCGTGGTCTCAGAACTTCTGAGCTGGGCAGAGAGAAGCCAGCCAAGGCCGTAGGCCCAGGTCTTGGGCTATAA--ATGGGTACACTCTTAG---AAATACTGAAATAGGAGGATATTTCTCTGCAAGGTGTGAAGGGCCCCTGTGTTCTGCACCCGGTGGGACCATGAAGGAGCCCGTATGTAGCCAG-AGCCCCAGGGAAAGCCTC---CAAGTGCAGGTTTGGAAATACCCCGGGAAGAGCCAGGCTGGCATCCGTGA-CAGGGTGTGGCTACAGGCTGGCACAGAACCTGGGAAGGTCTGGAGTCTCAGCCCCTTCAAGACCTGTATGGATTTGGGCATTTTGCCCATGTAGGAAATGAGGGTGTAG-----CCA--GAGTCCTAGTTCCCAGGATAGAGCCATAGGGATAAAAACAATTTAGGGATATTCTCTAAACAGCTGCTTCTCC---------------------------------tttttttttttttttttAAATTGAAACATCTCCAATAACATG----TAAT-TTATATCCCATCAGATATTGCTGTGTAGATGTATTGTAAACC----AGCAGCTTCATGTTTCTAGTTTTAA-ACCATACCTTAGATTagtggttcattgcatgtgtaggatttcataccctttgagaatctattaaaagctatggacgctctccccagaaaaca-gcatcacaggcagaattct-------------------------------------------------------------gcatccaatt------------------------------------------------tcaggggctacacagatgccc------ttgaaagtcatG------------GGGAACCTAT-GATCCATT--------TCAGATAAAA------------CTGAAAATCTTTTTT-------TCTAACTTTTCTTGGCC--------------------------------CAAATTAGAAATGA-------------------------------------------------------GCTAATTGATATTTAAGTTCTTTCTGTCCCCTAAATATTT-GGATGCCTTGGATTTGCTAACTATACTGATCG--------TTTTCCCATTTTCAGAGAGATCTGGTGGTTGATAAGAATAGTACTGTTGATAAGAATTGTGACTTTTAGTTGTCACAGGTGAC---- i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11326168 1843 + 104110932 TGGGTCCAAACCCCATGCCAGTGTAAACAGCGGGTTCTGCACGGAAGGAGGCCCTCTGAGAGCTCAGGAACATGCTTGTTTTTCACTGAGTCCTTTTGAACCGGCTTGAAGTGTCTCAGCTTTCTCATGCTAATTTACTATTCTCATAAAGTGGTTGATTTTCTCACACAATTCCCCTTTCCTCTACACACACCCAAACAAAAGAGGAGGTAAATCCTGCCTCAGATCGAAAGTTTCTTGTGGTGGGAAATAGGTTTTAAT----TGTATCCC-CACC-CCACCA---TTCCTTGCACCCCGTGAATCACGTGTTCA-----CCGGAG-TCCACAGTCtgggttttcctttcctttctgtggtGGTGCGGAGTGCGAAGGACGACCTAGCGG------GGGTCGCCTGTTCAGCAGCAGGGGCTGCTTCTGGCTGCTCTGGTTTGCGCAGTGCAGCCTGCCTGGTAGT----------------AACTCCCCTCCTttatcctc---ctgccccagctggtCCGGGACAACGCAGACCTGCGTTGTGAACTGCCCAAGCTGGAGAAGCGGCTGCGTGCCACGGCGGAGCGCGTCAAGGCACTGGAGAGCGCGCTGAAGGAGGCCAAGGAGAACGCCATGCGGGACCGCAAGCGCTACCAGCAGGAGGTGGATCGCATCAAGGAGGCCGTGCGGGCCAAGAACATGGCCAGAAGGGCCCATTCAGCCCAGATCGGTACGTGTGTGCACCGTGGCGCCCGGGGTTTGAGAAGCTACTGCGGCCTCCCAGCTAAGATTTGCTAAAAAGGTGAAGACAGCGCCAGCCCACTCTGGAACATCTGAAAGACTGGGATGGAGCCCACAGGCCGCAGCCTTCCCTGC-ACCCTATGCT------------------CACCCTGGGGGAATGGGAATGTCAGGCG-CCCCGTTATCCTATTCTGAGATATTCCGGCATCCATCGTGGTCTCAGAACTTCTGAACTGGGCAGAGAGAAGCCAGCCAAGGCCGTAGGCCCAGGTCTTGGGCTATAA--ATGGGTACACTCTTAG---AAATACTGAAATAGGAGGATATTTCTCTGCAAGGTGTGAAGGGCCCCTGTGTTCTGCACCCGGTGGGACCATGAAGGAGCCCGTATGTAGCCAG-AGCCGCAGGGAAAGCCTC---CAAGTGCAGGTTTGGAAATACCCCGGGAAGAGCCAGGCTGGCATCCGTGA-CAGGGTGTGGCTAAAGGCTGGCACAGAACCTGGGAAGGTCTGGAGTCTCAGCCCCTTCAAGACCTGTATGGATTTGGGCATTTTGCCCATGTAGGAAATAAGGGTGTAG-----CCA--GAGTCCTAGTTCCCAGGATAGAGCCATAGGGATAAAAACAATTTAGGGATATTCTCTAAACAGctacttctcc----------------------------------tttttttttctttttaaaatggaaacatctcCAATAACATG----TAAT-TTATTTCCCATCAGATATTGCTGTGTAGATGTATTGTAAACC----AGCAGCTTCATGTTTCTAGTTTTAA-ATCATACCTTAGATTAGTGGTTCATTGCATGTGTAGGATTTCATACCCTTTGAGAATCTATTAAAAGCTATGGACGCTATCCCCAGAAAACA-GCATCACAGGCAGAATTCT-------------------------------------------------------------GCATCCAATT------------------------------------------------TCAGGGGCTACACAGATGCCC------TTGAAAGTCATG------------GGGAACCTAT-GATCCATT--------tcagataaaa------------ctaaaaatctttttt-------tctaacttttcttgGCC--------------------------------CAAATTAGAAATGA-------------------------------------------------------GCTAATTGATATTTAAGTTCTTTCTGTCCCCTAAATATTT-GGATGCCTTGGATTTGCTAACTATACTGATCG--------TTTTCCCATTTTCAGAGAGATCTGGTGGTTGATAAGAATAGTACTGTTGATAAGAATTGTGACTTTTAGTTGTCACAGGTGAC---- i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34426578 1837 + 128595539 TGGGTCCAAACCCCATGCCAGTGTAAACGGTGGGTTCTGCATGGAAGGAGGCCCTCTGAGAGCTCAGGAACATGCTTGTTTTTCACTGAGTCCTTTTGAACCGGCTTGAAGTGTCTCAGCTTTCTCATGCTAATTTACTATTCTCATAAAGTGGTTGATTGTCTCACACAATTCGCCTTTCCTCTACACACACCCAAACAAAAGAGGAGGTAAATCCTGCCTCACATCGAAAGTTTCTTGTGGTGGGAAATAGTTTTTAGT----TGTATCCC-CACC-CCACCA---TTCCTTGCACCGCGTGAATCACGTGTTCA-----CTGGAG-TCCACAGTCTGGGTTTTCCTTTCCTCTCTGTGATTGTACGGAGTGCCAAGGACGACCTAGCGG------GGGTCGCCTGTTCAGCAGCAGGGGCTGCTTCTGGCTGCTCTGGTTTGCGCAGTGCAGCCTGCCTGGTAGT----------------AACTCCCCTCCTTTATCCTC---CTGCCCCAGCTGGTCCGGGACAACGCAGACCTGCGTTGTGAACTGCCCAAGCTGGAGAAGCGGCTGCGTGCCACGGCGGAGCGCGTCAAGGCGCTGGAGAGCGCGCTGAAGGAGGCCAAGGAGAACGCCATGCGGGACCGCAAGCGCTACCAGCAGGAGGTGGATCGCATCAAGGAGGCCGTGCGGGCCAAGAACATGGCCAGAAGGGCCCATTCAGCCCAGATCGGTACGTGTGTGCACCGTGGCGCCCGGGGTTTGAGAAGCTACTGCAGCCTCCCAGCTAAGATTTGCTAAAAAGGTGAAGACAGCGCCAGCCCACTCTGGAACATCTGAAAGACTGGGATGGAGCCCGCAGGCCGCGGCCCTCCCTGC-ACCCTGTGCC------------------CACCCTGGGGGAATGGGAATGTCAGGCGCCCCCGTTTTCCTACTC--AGATATTCCGGCATCCATCGTGGTTTCAAAACTTCTGAGCTGGGCAGAGAGAAGCCAGCCAAGGCCGTAGGCCCAGGTCTTGGGCTATAA--ATGGGTACACTCTTAG---AAATACTGGAATAGGAGGATATTTCTCTGCAAGGTGTGAAGGGCCCCTGTGTTCTGCACCCGGTGGGACCATGAAGGAACCCGTATGTAGCCAG-AGCCCCAGGGAAAGCCTC---CAAGTGCAGGTTTGGAAATACCCCGGGAAGAGCCAGGCTGGCATCCGTGA-CAGGGTGTGGCTACAGGCTGGCACAGAACCTGGGGAGGTCTGGAGTCTCAGCCCCTTCAAGACCTGTATGGATTTGGGCATTTTGCCCGTGTAGGAAATGAGGGTGTAG-----CCA--GAGGCCTATTTCCCAGGATAGAGCCATAGGGATAAAAACAATTTAGAGATATTCTCTAAACAGCTGCTTCTCC-------------------------------------TTTTTTTTTTTTTAAATTGAAACATCTGCAAAAACATG----TAAT-TTATTTCCCATCAGATATTGCTGTGTAGATGTATTGTAAACC----AGCAGCTTCATGTTTCTAGTTTTAA-ATCATACCTTAGATTagtggttcattgcatgtgtaggatttcataccctttgagaatctattaaaagctatggacactctccccagaaaaca-gcatcacaggcagatttct-------------------------------------------------------------gcatccaatt------------------------------------------------tcaggggctacacagatgccc------ttgaaagtcatG------------GGGAACCTAT-GATCCATT--------TCAGATAAAA------------C--AAAATCTTTTTT-------TCTAACTTTTCTTGGCC--------------------------------CAAATTAGAAATGA-------------------------------------------------------GCTAATTGATGTTTAAGTTCTTTCTGTCCCCTAAATATTT-GGATGCCTTGGATTTGCTAACTATACTGATCG--------TTTTCCCATTTCCAGAGAGATCTGGTGGTTGATAAGAATAGTACTGTTGATAAGAATTGTGACTTTTCGTTGTCACAGGTGAC---- i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87910607 1816 - 158406734 TGGGTCCAAACCCCACGCCACTGTAAGCAGCAGGTCCTGCATGGAAGGAAGCCCTCTGAGAGCTCA-GAACATGCTTGTTTTTCACTGAGTCCTTTTGAACTAGCTTT---------AGCTTTCTCATGCTAATTTACTATTCTCAT-ACATGGTCAAGTTTCTCACACAATTCCCCTTTCCCCTACATACACCCAAACAAAAGAGGAGGAAAATCTTGCGTCAGACCGAAGGTTTCCTGTGGTGGGAAATAGCTTTTAAT----TGTAACCC-CACCACCCCCA---TTCCTTGCACCC-GTGAATCACGTGTTCAGCAACCCAGAGTCCCACAGTCTGAGTTTTCCTTTCCTTTCTATGGTTGTGTGGAGTGTCAAAGACGATCTAGCGG------GGGCCACCTGTT-AGCCGCAGAGGCTGCTTCTGGCTGCTCTGGTTTGCACAGTGCAGCCTGCCAG---GT----------------AACTCTCTGCCTTTCCCCTCCTGCTGCCCCAGCTGGTCCGGGACAACGCAGACCTGCGCTGTGAACTGCCAAAGCTGGAAAAGCGGCTGCGCGCCACGGCCGAGCGTGTCAAGGCGCTGGAGAGCGCTCTGAAGGAGGCCAAGGAGAACGCCATGCGGGACCGCAAGCGCTACCAGCAGGAGGTGGATCGCATCAAGGAGGCTGTGCGGGCCAAGAACATGGCCAGGAGGGCCCATTCAGCCCAGATCGGTATGTGCATGCACCGTGGTGCCTGGGGTTTGAGAAGCTCCGGTGGCCTTCCAGCTAAGATTTGCT-AAAAGATGAAGAGAACGC----------------------------------AGTCCTGCAGGACACAGCCCTCACTGC-ACCCTGTTCTCCTCCCCAGCCTCCCACCCACCCCGGGGGAATAGAATTGTCAGACACCCCCATTATTCTACTCTGAGATATTCCAGCATACATTGTGGTCTCAAAACTTCTGAGCTGGGCAGAGAGAAGGCAGCCAAGGCTCTAGGCCTAGGTCATGGGCTATAA--ATATGTATACTCTTAGATAAAATACAGGAATAGGAGGATATTTCTCTGCAAGGTGTGAAGGGCCCCTGTGTTCTACACCTGGTGGGATCATGAAGGAGCCTGCATGTAGCCAG-AGCCCCAGGGAAGGCCTC---CAAGTGCAGATCTGGAAATACCCCAGGAAGAACCAGGCTGGCATCGGTGA-TGGGGCGTGGCTACAGGCTGGCACAGAACTTGGGGAGGTCTAGAGTCTCAGGTCCTTCAAGACCTGTATGGATTTGGGCATTTCACCCATGTAGGAAATGAGGGTGTAG-----CCA--GAGTCGTAGCTCCCAGGATAGAGCCACAGGGATAAAAACAATTTCGGGATATTCTCTAAACAG--------CC-------------------------------------TCTTTTTTTTCTTTAATTGAAACATCTCCAATAATGTG----TAAT-TTATTTCCCATCAGGTATTGCTGTGCAGATATATTGTAAACCAGCAAGCAGCTTCATGTTTCTGGTTTTAA-ATCATACCTTAGATTAGTGGCTAATCGCATTTGTAGGATTTCATAccctttgcaaatctattaaaagctatggaccctctccccaaaaaata-gcatcacaggcagaattct-------------------------------------------------------------gcatccaatt------------------------------------------------tcagggactacacagatgccc------ttgacagtcat-------------ggGAACTGAT-GATCTGTT--------TCAGATAAAA------------CTGAAAATCTTTTTT-------CCTAACTTTTCTTGGCC--------------------------------CAAATTAGAAATGA-------------------------------------------------------GCCAATTGATGTATAATTTCTTTCTGTCCCTTAAATATTT-GGATGCCTTGGATTTTCTAACTATACTGATAG--------TTTTCCCATTTTCAGAAAGATCTGGTGGTTGATAAGAATTGTACTGTTGATAAGACTTGTGAATTTTATTTGTCACAGGTGAC---- i calJac3.chr6 C 0 C 0 s mm10.chr2 49756965 1814 + 182113224 TAGGTTTTAACCCAACGCCAGTACAGACTGT--GCTCTGCA-------AGGTCTGCAGAGGACTCTGAAATGTGCCCATTTC------------------CTGACTTGGAATTTCTCAGCTCACAAGTAC---------ATCCT----AGAGTAATAAATTCCTCACGGCCTCTTCCCTTCCC--AGACACACTCAAACAAGAATACA-------CCTGC----------------CCTGTGGCTCGCCATGGCTTCTACTTTAATGCATCCC---CC-TTATTA---CTGCT-----CCTGTGAG----------------CTGGAG----------------------------------TTATATGGACCATCAAAGACAACCTAGTAGGGTGATGGTCTGGCTGCTCGTCAGGTTTGTCTCTTCTTCCATGTCCTTGT-------------CCTGCCAGGGAGTAGCACAGCCTTGCTCAAACCTGGCTTCTTTGCCCCT---CTGCTGCAGCTGGTCCGGGACAATGCAGATTTGCGCTGTGAACTCCCCAAGCTGGAGAAGAGGCTTCGTGCTACCGCAGAACGCGTCAAGGCCTTGGAGAGTGCGCTGAAAGAGGCCAAGGAGAATGCCATGAGGGACCGAAAACGCTACCAGCAGGAAGTAGATCGCATCAAGGAGGCTGTGCGAGCCAAGAACATGGCCAGGAGGGCACATTCGGCTCAGATCGGTATGTGTGTACCAAGGGGTG---AGAGTGACATGAACTTATGTGGGATTTCA-----------CT----------------------------------CACCTGAAAGGCTAGGATAGATCCAGTGGGACTTGGAATTCCCGGCGACCTGGTGTT------------------CATCCTGGAAAAGCATGAGATTCAGACACCACTGTCCTCCT----------------GAGTATAGGGTGCTCTTCAGAACCGTGCGCTGAGCCTC-AGAAGCCAGC--------TGTGCTGGAGCTTTTGGCTGTAAGCAGAGGCACACTCTTGG---AAATAGTATAATTTATGAATATCTCGCAGCA----------------------------------GGACCATGAAGAATACCATCTGTCT------GCTTCAGGGAAATCCTC---T-------GGCTTGGAAATA-ACTGCAAAGAGTCAGGCCAGCAACACTGA--GTACTGTTGCTGCGAGCTGA----------ATGGTGGGCTGAAGTTCAAGCCC---CAAGGCC--TATGGAGCTGGGCGCTTTCCTCAAATAGGAATAGTGGCTGTAGATGCTCTA-----TCACAGATGCCAAGCTAAAGCCAGAGGGATAAAAG-GACTTACAGGTGTTGTCTAGA-------------------------------------------------------GTTATTTTTAATTGAAGCATCCTTAATAACTTG----CAACATTATTTCCCATCAGATATTGTTTTGTAGCTATATTGTGAGAC----AGCCACTTTGTGTTTCCACCTTAAA-A--ATCCCTTAGATTAGTGATACATTGAATTTATTCGGTTTCTTACCCTTTGAG---------AAAATTGTGGCCTCTTTTCCTAGAAAGC--TCATCACAGGTAGAATTCTTGTGAAATCTATAGGGAACTATGGATCTACTGCAGATAAAAACCAAAATCCTTTGCTTCTAACatttatttatttatttatttatttatttaAAATTTTCACCCTTAAAAATAAGATGATTAgaggctagaaagatggctcagcagttaagagcactggctgttcttccagaggacccaa-gttcaattcccagcacccacatggcagcttgcagctgtctgtaactcctgttccaggggatctgacacacattggccagatatacatgcaggcaaaacaccaatgtacataaaatacaaataaaTAAATTATTCAAGAAAAAAAAGAATCTTTGTTTTTTAAAAAGAAAAAATAATAGGATGATTAATATATAAGTTCTCTCTCTCCCTGAATTATGTGGGGTGTCCTTAGTTTATTTTTCAGAG-GCCAG--------ACCTGCTATGCCCAGGAAGGTCTGGGGGTAAGTAAGTGGTGCAATGTTGATAA-ACCCATGAC---TGGTCGTCACCAATGAT---- i mm10.chr2 C 0 C 0 s canFam3.chr19 50666996 1552 + 53741614 TGGGTCCAAGCCACCTGCGGGTGTAGACCACGTGTGGTGCACGCGGGGAGGCCTGCGGAGAGCTCCGGAACATGCACGCCGGTACCTG-GTGCTCCCGAACTTGCATCACAGGGCTCAGCTTGCACCTGCTAGT-----GCCCGCGT--AGCCAGCGGCCCTCACCCTGGGTCCCCC----------ACCCACGCAAACCCCAGAGGAAGCAAATCCTGCCCAAGCCGGAAAGCTTCCTGGGGCTGGAAGTGGCTTTGCAC----TCCAGCCCGCATC-CCTCCGCACTTGCTTGCACAC-GTGAGCC-CGTGT-----------GGC-CCCGTGTCGTGGGTCC-----------------------------------ACGGCCTTGCCA------GAGC-----------CTGGGGGCGCCGCTCGTCGCTGC-------------------CCTCCC-----GT----------------AAGTGCCCCCGTGTGCTGTC---C--CCGCAGCTGGTCCGGGACAACGCAGACCTGCGCTGCGAGCTGCCCAAGCTGGAGAAGCGGCTGCGGGCCACGGCCGAGCGCGTCAAGGCGCTGGAGAGCGCGCTGAAGGAGGCCAAGGAGAACGCCATGCGGGACCGCAAGCGCTACCAGCAGGAGGTGGACCGCATCAAGGAAGCCGTTCGAGCCAAGAACATGGCCAGGAGGGCCCACTCGGCCCAGATCGGTACGTGCGC---------CGCCCGCGGCCCGGG----------------------------TGCT-----------------------------------------------------------GCATGGCCCGGTCCGGCAGCC-TCCGCTTGCT------------------CACCCTGCGG------------------CCCGCACCGCCCTGCGCT------------------------CCCCGAGGCTGCTGGGCTGCGCGCA-CCAGGGCGGCCGCGGCTGTC-GCTGAAGGCACGTGGCGTCG--GGGCGTACGGTCCC-----CCATACCGGCCCCCTTGGCTGTTCCGCAGCGAGGCCCAAGGGCCCCTTCCATTCCATACCAAGCAGAA-CACGAAGGGG-CGGGATGTGGTCAGAAGCCTCCGGGGAAGCCGCGTGCAAGGGCACGTACGGAAGCACCTTGGGA------------GCCTCCGTGGGcagggtgggg-tccagggtgg----------ggtccagCCTGGACGTCCAGCCCCTTCCAGACC----TCGATCTGGGCATTTGGC-CACGCAGAGAACGGGGGTGTAG-----CTGCTCAGTCCCAGTTCCCAGGATGGAGCCGCAGGCGGCAGAGGGATTTCGGAATGTTCTCTAAAGAG-----------------------------------------------CTTTTTTCTTTTTAGATTGAAGTGCCTCCAACAACACG----CGAGGTTGTTTCCCATCAGATACTGCCGTGCAAATGTTTTGTAAACC----AAC---CTCATGTTTCTAGTTTTAAGATCATACCTTAGATTAATGTTGCATTGCATTCACTGGCTTTCATGctctttgcaaatctg--ggaaactagggaccttcttctccgaaaaagcgcatcgtaggcagagttct-------------------------------------------------------------gc-tccagtt------------------------------------------------tcaggggacgcacagatgccc------ttgaaacccaAG------------CGTTACCGGTAGATCTTTC--------TCGGATAAAA------------CCAAAAGCCCT-----------TCTGATTTTCCTCAGCC--------------------------------------AGAGTTAC-------------------------------------------------------AGTAGTTGGTGTAGAAGTTCTCCGTGTCCCCC-CACGGCT-GGGGGCGCTGGGTCAGCTGACGGTACCGTCAGAAGCGCAAACGGCCTGTTGTCACAAAGGCCCGGTGGCCCATGAGAGTCG-------------------GGCGTCGGGTTTCCACATGCGGCTGAC i canFam3.chr19 I 301 C 0 a score=6888422.000000 s hg38.chr2_GL582966v2_alt 83508 2026 + 96131 CTGT-AGATATCAGGGTTGCTGTTAAGACTTTTCTAAATGTCTG--TTCTCTCTTCTTTCTGTTGGTTGGATACAGCCAAGCCCATCCGCCCCGGACACTACCCGGCCTCATCTCCAACGGCCGTCCATGCCATTCGAGGGGGAGGAGGCAGCTCTTCAAATTCCACTCACTACCAGAAATAAATACAAAGTGAGTCCCAT-GTCAAGGGTGGTTTCT--------------------CTATCTGGAGGCAGAGGCTTCTTGCCTTTCCAAAGCCCCTGCCTGGCAGTGGAC------CTTGAGTAGAGAGGAGTTCTGCTCTACTCCAGCACACACCCTGGGGGTTCCAGGTAAACAGAGACCCAGACCTGTCCTCACTTAGTC--CAGAGCCCTGGGGTCTTCTAGCTGAGGCTGTCTGGGGCCCATGGGACCTGGAGCCAGGCCCGGCCTAATCCCCTCCAGGGGTAGGGGTG-----GTGAGTGATTCAGCCGAGCTTTG-----TTTTGCCTGTGGGACTCCCCTCTTTAATTGGCATCCCAAAGGGCATTACCTGTTTGTCAACTGC-TTTACCCACAGCAGACAGAAGTTGGGGGTTGCTTTAAGTCTCAGGAACAGAATATAAAGAAAGAGCCAGATAATAGAAAGTGATGTTTTTATGTTTACTATCTGAACTCAACAAGTGGGGATTTTAA-GAA---------GATATCTAGATGAGTCCAGGATGCTTTTTTCTTTGAGAT----GGTGGTCTGCAAGCTTCTCTACCCACAACCCATGTGCACGACATTTCTCTCCCAGCAAAAAGAAAAGGAACGAGTGATATTCTTTCCAAAAGAGAAGAAGCAGAGAGCGAAAACTGTCATCC----TGATGG--AAATGGAGAAAAGAGGTTACTAGTTGGGCGGGCAGACAGATGACTAGGTGACCAGAAAACTTTGTTTAGATAAACTCTGACTTTGA-------ACATGCAGATGGGAAGAGGTGGCTCTGAACATTGTCCTTGGACTCTAAGCCCTTGCTAGGGTAGCTGGCTCCCAAGGCAGGCAAGCAT---GCAAGG-TGTG-------AAGCCTGGACCCCT-CCTCATCCAGTCCTTTCTGCATCAAGGCAA-GAAGGTGAGCAGGAGGGGCTGGAGCCATCACTCAGGGTCC----CGGCATCGCCCAGGCATAGGCTAAAACTTCCAAGGGAAATGCTTTGGTAGTTGCCCCCACACAACTTTTACCTGTGCTGCCCCAGGCAGTGCCAACGAGCAGGCCAGGGGCTGGTCAGAGTAGTGGGAACAGGAGGGAAGGCGGAGGCAGCCCGCGGGCGGGCAGTGTGCCTGCCATCATCTGCCATCTTCTAGACAGGAAAATGGGAAATGGTCTTGGCGGTGGGCCACCCCATTCCTATCTAATCTCTGCTTCCAATCAGAAATAGAATGAAACTGGAAGTTAGAAAGTTGCTTTTGACTACATATTGTCAG-TATCGAGGCTGATACCTGAAGGG-AACTCTAAGATCCAGCTGGGCAGCTTAG----AACAGAAAAGCCT-------------------GAAGCAGTG---------------------------GTCATCGAACTTTGGTGGATGTGA-GCATC-----------------CTTGAGCACCCAGAGGC-------CCAGGCTCC---TTAGAAGAG-GAAGg---gcctgggctttgtttgtctttttaaccaagtactccaggtgattctgatattcatcgaagtttgaa------aacTCTC---------CAtggtttatacaggatggcggtttacgtctgtct-tatgtaagggaaatttgaaggtggtacatcagtagtt----aagaatctccacagtgaaaacagaaacctagcctctta-actaggttaagcacgtgcctgcctcctgaactcaaggccag-ctcaaggtcacca-aatgacttcag------tttcagccatcatgcctacattccaactttagcaaccagagaggaagcagagaagaggcaaaag--cagccgtcctgaatga--atctcctttaagtagccttcct--gaagccccatgcaatgctgatgcctccctttccctggacagcactgagccacatggccacatct--agctggaaaag---------gtagtctttt-agctgggcacatcactaccccaaagaaaggtaatgcttt s panTro4.chr2B 153196310 2028 + 247518478 CTGT-AGTTATCAGGGTTGCTGTTAAGCCTTTTCTAAATGTCTG--TTCTCTCTTCTTTCTGTTGGTTGGATACAGCCAAGCCCATCCGCCCCGGACACTACCCAGCCTCATCTCCAACAGCCGTCCATGCTATTCGAGGGGGAGGAGGCAGCTCTTCAAATTCCACTCACTACCAGAAATAAATACAAAGTGAGTCCCAT-GTCACGGGTGGTTTCT--------------------CTATCTGGAGGCAGAGGCTTCTTGCCTTTCTAAAGCCCCTGCCTGGCAGTGGAC------CTTGAGTAGAGAGGAGTTCTGCCCTACTCCAGCACACACCCTGGGGGTTCCAGGTAAACAGAGACCCAGACCTGTCCTCACTCAGTC--TAGAGCCCTGGGGTCTTCTAGCTGAGGCTGTCTGGGGCCCATGGGACCTGGAGCCAGGCCCGGCCTAATCCCCTCCAGGGGTAGGGGTG-----GTGAGTGATTCAGCCGAGCTTTG-----TTTTGCCTGTGGGACTCCCCTCTTTAATTGGCATCCCAAAGGGCATTACCTGTTTGTCAACTGC-TTTACCCACAGCAGACAGAAGTTGGGGGTTGCTTTAAGTCTCAGGAACAGAATATAAAGAAAGAGCCACATAATAGAAAGTGATGTTTTTATGTTTACTATCTGAACTCAACAAGTGGGGATTTTAA-GAA---------GATATCTAGGTGAGTCCAGGATGCTTTTTTCTTTGAGAT----GGTGGTCTGCAAGCTTCTCTACCCACAACCCATGTGCACGACATTTCTCTCCCAGCAAAAAGAAAAGGAACGAGTGATATTCTTTCCAAAAGAGAAGAAGCAGAGAGCGAAAACTGTCGTCC----TGATGG--AAATGGAGAAAAGAGGTTACTAGTTGGGCGGGCAGACAGATGACTAGGTGACCAGAAAACTTTGTTTAGATAAACTCTGACTTTGA-------ACATGCAGATGGGAAGAGGTGGCTCTGAACATTGTCCTTGGACTCTAAGCCCTTGCTAGGGTAGCTGGCTCCCAAGGCAGGCAAGCAT---GCAAGG-TGTG-------AAGCCTGGACCCCT-CCTCATCCAGTCCTTTCTGCATCAAGGCAA-GAAGGTGAGCAGGAGGGGCTGGAGCCATCACTCAGGGTCC----CAGCATCACCCAGGCATAGGCTAAAACTTCCAAGGGAAATGCTTTGGTAGTTGCCCCCACACAACTTTTACCTGTGCTGCCCCAGGCAGTGCCAACGAACAGGCCAGGGGCTGGTCAGAGTAGTGGGAACAGGAGGGAAGGCGGAGGCAGCCCGCGGGCGGGCAGTGTGCCTGCCATCATCTGCCGTCTTCTAGACAGGAAAATGGGAAATGGTCTTGGCGGTGGGCCACCCCATTCCTATCTAATCTCTGCTTCCAATCAGAAATAGAATGAAACTGGAAGTTAGAAAGTTGCTTTTGACTACATATTGTCAG-TATCGAGGCCGATACCTGAAGGG-AACTCTAAGATCCAGCTGGGCAGCTTAG----AACAGAAAAGCCT-------------------GAAGCAGTG---------------------------GTTGTCGAACTTTGGTGGATGTGA-GCATC-----------------CTTGAGCACCCAGAGGC-------CCAGGCTCC---TTAGAAGAG-GAAGg---gcctgggctttgtttgtctttttaaccaagtactccaggtgattctgatgttcatcgaagtttgaa------aacTCTC---------CAtggtttatacaggatggcggtttacgtctgtct-tatgtaagggaaatttgaaggtggtacatcagtagtt----aagaatctccacagtgaaaacagaaacctagcctctta-actaggttaagcacgtgcctgcctcctgaactcaaggccag-ctcaaggtcacca-aatgacttcag------tttcagccatcatgcctacattccaactttagcaaccagagaggaagcagagaagaggcaaaagcacagccgtcctgaatga--atctcctttaagtagccttcct--gaagccccatgcaatgctgatgcctccctttccctggacagcactgagccacatggccacatct--agctggaaaag---------gtagtctttt-agctgggcacatcactaccccaaagaaaggtaatgcttt i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38403158 2024 + 135000294 CTGT-AGATATCAGGGTTGCTGTTAAGCCTTTTCTAAATGTCTG--TTCTCTCTTCTTTCTGTTGGTTGGATACAGCCAAGCCCATCCGTCCCGGACACTACCCGGCGTCATCTCCAACGGCCGTCCATGCCATTCGAGGGGGAGGAGGCAGCTCTTCAAACTCCACTCACTACCAGAAATAAATACAAAGTGAGTCCCAT-GTCAAGGGTGGTTTCT--------------------CTATCTGGAGGCAGAGGCTTCTTGCCTTTCCAAAGCCCCTGCCTGGCAGTGGAC------CTTCAGTAGAGAGGAGTTCGGCAGCACTCCAGCACACGCCCTGGGGGTTCCAGGTAAACAGAGACCCAGACCTGTCCTCACTCAGTC--TAGAGCCCTGGGGTCTTCTAGCTGAGGCTGCCTGGGGCCCATGGGACCTGGAGCCAGGCCCGGCCTAATCCCCTCCAGGGGTAGGGGTG-----GTAAGTGATTCAGCCGAGCTTTG-----TTTTGCCTGTGGGACTCCCCTCTTTAGTTGGCATCCCAAAGGACATTACCTGTTTGTCAGCTGCTTTTACCCAGAGCAGACAGAAGTTGGGGGTCGCTTTAAGTCTCAGGAACAGAATATAAAGAAAGAGCCAGATAATAGAAAGTGATGTTTTTATGTTTACTATCTGAACTCAACAAATGGGGATTTTAA-GAA---------GATATCTAGGTGGGTCCAGGACGCTTTTTTCTTTGAGAT----GGTGGTCTGCAAGCTTCTCTATCCACAACCCACATGC---ACATTTCTCTCCCAGCAAAAAGAAAAAGAACGAGTGATATTCTTTACAAAAGAGAAGAAGCAGAGAGCGAAAACTGTCGTCC----TGATGG--AAATGGAGAAAAGAGGTTACTAGTTGGGCGGGCAGACAGACGACTAGGTGACCAGTAAACTTTGTTTAGAAAAACTCTGACTTTGA-------ACATGCAGATGGGAAGAGGTGGCTCTGAACATTGTCCTTGGACTCTAAGCCCTTGCTAGGGTAGCTGGCTCCCAAGGCAGGCAAGCAT---GCAAGG-TGTG-------AAGCCTGGACCCCT-CCTCATCCAGTCCTTTCTGCATCAAGGCAA-GAAGGTGAGCAGGAGGGGCTGGAGCCATCACTCAGGGTCC----CGGCATGGCCCAGGCTTAGGCTAAAACTTCCAAGGGAAATGCTTTGGTAGTTGCCCCCACACAACTTTTACCTGTGCTGCCCCAGGCAGTGCCAAGGAGCGGGCCAGGGGCTGGTCAGAGTAGTGGGAACAGGAGGGAAGGCAGAGGCAGCCCGCGGGCAGGCAGTGTGCCTGCCATCATCTGCCGTCTTCTAGACAGGAAAATGGGAAATGGTCTTGGCGGTGGGCCACCCCATTCCAATCTAATCTCTGCTTCCAATCAGAAATAGAATGAAACTGGAAGTTAGAAAGTTGCTTTTGACTACATATTGTCAG-TATCGAGGCTGATACCTGAAGGG-AACTCTAAGATCCAGTTGGGCAGCTTAG----AACAGAAAAGCCT-------------------GAAGCAGTG---------------------------GTTGTCGAACTTTGGTGGATGTGA-GCATC-----------------CTTGAGCACCCAGAGGC-------CCAGGCTCC---TTAGAGGAG-GAAGg---gcctgggctttgtttgtctttttaaccaagtactccaggtgattctgatattcattgaagtttgaa------aacTCTC---------Cgtggtttatacaggatggcagtttacgtctgtct-tatgtaagggaaatttgaaggtggtacatcagtagtt----aagaatctccacagtgaaaacagaaacttagcctctta-actaggttaagcacgtgcctgcctcctgaactgaaggccag-ctcaaggtcacca-aatgacttcag------tttcagccatcatgcctacattccaactttagcaaccagagaggaagcagagaagaggcaaaag--cagccgtcctgaatga--atctcctttaagtaggcttcct--gaagccccatgcaatgctgatgcctccctttccctggacagcactgagccacatggccacatct--agctggaaaag---------gtagtctttt-agctgggcacatcactaccccaaagaaaggtaatgcttt i ponAbe2.chr2b I 164 C 0 s nomLeu3.chr20 82355752 2023 - 85365473 CTGTAAGATATCAGGGTTGCTGTTAAGCCTTTTCTAAATGTCTG--TTCTCTCTTCTTTCTGTTGGTTGGTTACAGCCAAGCCCATCCGCCCCGGACACTACCCGGCCTCATCTCCAACGGCCGTCCATGCCATTCGAGGGGGAGGAGGCAGCTCTTCAAACTCCACTCACTATCAGAAATAAATACAAAGTGAGTCCCAT-GTCAAGGGTGGTTTCT--------------------CTATCTAGAGGCAGAGGCTTCTTGCCTTTCCAAAGCCTCTGCCTGGCAGTGGAC------CTTCAGTAGAGAGGAGTTCGGCTTTACTCCAGCACACGCCCTGGGGGTTCCAGGGAAACAGAGACCCAGACCTGTCCTCACTCAGTC--TAGAGCCCTGGGGTCTTCTAGCTGAGGCTGCCTGGGGCCCATGGGACCTGGAGCCAGGCCCGGCCTAATCCCCTCCAGGGGTAGGGGTG-----GTGAGTGATTCAGCTGAGCTTTG-----TTTTGCCTGTGGGACTCCCCTCTTTAGTTGGCATCCCAAAGGGCATTACCTGTTTGTCAACTGCTTTTACCCAGAGCAGACAGAAGTTGGGGGTCGCTTTAAGTCTCAGGAGCAGAATATAAAGAAAGAGCCAGATAACAGAAAGTGATGTTTTTATGTTTACTATCTGAACTCAACAAATGGGGATTTTAA-GAA---------GATATCTAGGTGGGTCCAGGATGCTTTTTTCTTTGAGAT----GGTGGTCTGCGAGCTTCTCTACCCACAACCCACATGCCTGACATTTCTCTCCCAGCAAAAAG-AAAGGAACAAGTGATATTCTTTACAACAGAGAAGAAGCAGAGAGCGAAAACTGTCGTCCTTTGTGATGG--AAATAGAGAAAAGAGGTTACTAGTTGGGCAGGCAGACAGATGACTAGGTGACCAGAAAACTTTGTTTAGAAAAGCTC------TGA-------ACATGCAGATGGGAAGAGGTGGCTCTGAACATTGTCCTTGGACTCTAAGCCCTTGCTAGGGTAGCTGGCTCCCAAGGCAGGCAAGCAT---GCAAGGTTTTG-------AAGCCTGGACCCCT-CCTCATCCAGTCCTTTTGGCATCAAGGCAA-GAAGGCGAGCAGGAGGGGCTGGAGCCATCACTCAGGGTCC----CGGCATGGCCCAGGCTTAGGCTACAACTTCCAAGGGAAATGCTTTGGTAGCTGCCCCCACACAACTTGTACCTGTGCTGCCCCAGGCAGTGCCAAGGAGCAGGCCAGGGGCCAGTCAGAGTAGTGGGAACAGGAGGGAAGGCGGAGGCAGCCCGCGGGCGGGCAGTGTGCCTGCCATCATCTGCCATCTTCTAGACAGGAAAATGGGAAATGGTCTTGGCAGTGGGCCACCCCATTCCTATCTAATCTCTGCTTCCAATCAGAAATAGAATGAAACTGGAAGTTAGAAAGTTGCTTTTGACTACATATTGTCAG-TATCGAGGCTGATACCTGAAGGG-AACTCTAAGATCCAGCTGGGCAGCTTAG----AACAGAAAAGCCT-------------------GAAGCAGTG---------------------------GTCCTCGAACTTTGGTGGATGTGA--CATC-----------------CTTGAGCACCCAGAGAC-------CCAGGCTCC---TTAGAGGAG-GAAGg---gcctgggctttgtttgtctttttaaccaagtactccgggtgattctgatattcatcgaagtttgaa------aacTCTC---------CAtggtttatacaggatggcagtttacgtctgtct-tatgtaagggaaatttgaaggtggtacatcagtagtt----aagaatctccacagtggaaac--aaacctagcctctta-actaggttaagcacgtgcctgcctcctgaactcaaggccag-ctcaaggtcacca-aatgacttcag------tttcagccatcatgcctacattccaactttagcaaccagagaggaagcagagaagaggcaaaag--cagctgtcctgaatga--atctcctttaagtagccttcct--gaagccccatgcagtgccgatgcctccctttccctggacagcaccgagccacatggccacattt--agctgggaaag---------gtagtgtttt-agctgggcacatcaccaccccagagaaaggtaatgcttt i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11967384 2031 + 106825570 CTGT-AGGTATCAGGATTGTTGTTAAGCCTTTTCTAAATGTCTG--TTCTCTCTTCTTTCTGTTGGTTGGATACAGCCAAGCCCATCCGCCCCGGACACTACCCGGCCTCATCTCCAACGGCCGTCCATGCCATTCGAGGGGGAGGAGGCAGCTCTTCAAACGCCACTCACTACCAGAAATAAATACAAAGTGAGTCCCAT-GTCAAGGGTGGTTTCT--------------------CTATCTGGAGGCAGAGGGTTCTTGCCTTTCTCAAACCCCTGCCTGGCAGTGGAC------CTTCAGTAGAGAGGAGTTCGGCTCTATTCCAGCACACGCCCTGGGGGTTCCAGGTAAACAGAGACCC-GACCTACCCTCACTCAGTC--TAGAGCCCTGGGGTCTTCTAGCTGAGGCTGCCTGAGGCCCCTGGGACCTGGAGCCAGGCCGGGCCTAATCCCCTCCAGGGGTAGGTGTA-----GTGAGTGATTCAGCTGAGCTTTGTTTTTTTTTGCCTGTGGGACTCACCTCTGTAGTTGGCATCCCGTAGGGCATTACCTGTTTGTCAACTGCTTTTACCCAGAGCAGACAGAAGTTGGGGGTTGCTTTAAGTCTCAGGAACAGAATATAAAGAAAGAGCCTGATAATAG-AAGTGATGTTTTTATGTTTAGTATCTGAACTCAACAAATGGGGATTTTAA-GAA---------GATACCTAGGTGGGTCCAGGGCGCTTTTTTCTTTGAGAT----GGTGGTCTGCAAGCTTCTCTGCCCACAACCCACATGCCCAACACTTCTCTCCCAGCAAAAAGAAAAGGAACGAGTGATATACTTTACAGAAGCGAAGAAGCAGAGAGCGAAAACTGTCATCCTGTGTGATGG--AAACGGAGAAAAGAGGTTACTAGTTGGGCGGGCAGAAAGACTGCTAGGTGACCAGAAAACTTCATTTAGAAAAACTCTGACTTTGA-------ACATGCAGATGGGAAGAGGTGGCTCTGAACATTGTCCTTGGACTCTAAGCCCTTGCTAGGGTAGCTGGCTCCCAAGGCAGGCAAGCAT---GTAAGG-TGTG-------AAGCCTGGACCCCT-CCTCATCCAGTCCTTTCTGCATCAAGGCAA-GAAGGCGAGCAGGAGGGGCTGGAGCCATCACTCAGGGTCC----TGTCATGGCCCAGGCTTAGGCTAAAACTTCCAAGGGAAATGCTTTGGTGGCTGTCCCCACACAACTTTCACTTGTGCTGCCGCAGGCAGTGCCAAGGAGCAGGCCAGGGGCTGGTCAGAGTAGTGGGAACAGGAGGGAAGGCGGAGGCAGCCCACGGGTGGGCAGTGTGCCTGCCATCATCTGCCGTCTTCTAGACAGGAAAATGGGAAATGGTCTTGGCAGTGGGCCACCCCATTCCTATCTAATCTCTGCTTCCTATCAGAAATGGAATGAAACTGGAAGTTAGAAAGTTGCTTTTGACTACATGTTGTCAG-TATCGAGGCTGATACCTGAAGTG-AACTCTGAGATCCAGCTGGGCAGCTTAG----AACAGAAAAGCCT-------------------GAAGCAGTG---------------------------GTCCTGGAACTTTGGTGGATGTGA-GCATC-----------------CTTGAGCACCCAGAGGC-------CCAGGCTCC---TTAGAGGAG-GGAGG---GCCTGGGTTTTGTTTGTCTttttaaccaagtactccaggtgattctgatactcatcgaagtttgaa------aacTCTC---------CAtggtttatataggatggcagtttacttctgtct-tatgtaaaggaaattggaaggtggtacgtctgta-------aagaatctccacagtgataacagaaatctagcctctta-actaggttaagcaagtgcctgcctcccaaactcaaggccag-ctcaaggtcacca-aatgacttcag------tttcagccatcatgcctacattccaagtttagcaaccagagaggaagcagagacgaggcaaaaa--cagccatcctaaatga--atctcctttaagtagccttcct--gaagccccatgcaatgctgatgcctccctttccctgggcagcactgggccatgtggccacatct--agctggaaaag---------gtagtctttt-agctgggcacatcactgccccaaagaaaggtaatgctct i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37670820 2031 + 132586672 CTGT-AGGTATCAGGATTGTTGTTAAGCCTTTTCTAAATGTCTG--TTCTCTCTTCTTTCTGTTGGTTGGATACAGCCAAGCCCATCCGCCCCGGACACTACCCGGCCTCATCTCCAACGGCCGTCCATGCCATTCGAGGGGGAGGAGGCAGCTCTTCAAACGCCACTCACTACCAGAAATAAATACAAAGTGAGTCCCAT-GTCAAGGGTGGTTTCT--------------------CTATCTGGAGGCAGAGGGTTCTTGCCTTTCTAAAACCCCTGCCTGGCAGTGGAC------CTTCAGTAGAGAGGAGTTCGGCTGTATTCCAGCACACGCCCTGGGGGTTCCAGGTAAACAGAGACCC-GACCTACCCTCACTCAGTC--TAGAGCCCTGGGGTCTTCTAGCTGAGGCTGCCTGAGGCCCCTGGGACCTGGAGCCAGGCCGGGCCTAATCCCCTCCAGGGGTAGGTGTA-----GTGAGTGATTCAGCTGAGCTTTGTTTTTTTTTGCCTGTGGGACTCACCTCTGTAGTTGGCATCCCGTAGGGCATTACCTGTTTGTCAACTGCTTTTACCCAGAGTAGACAGAAGTTGGGGGTTGCTTTAAGTCTCAGGAACAGAATATAAAGAAAGAGCCTGATAATAG-AAGTGATGTTTTTATGTTTAGTATCTGAACTCAACAAATGGGGATTTTAA-GAA---------GATACCTAGGTGGGTCCAGGGCGCTTTTTTCTTTGAGAT----GGTGGTCTGCAAGCTTCTCTGCCCACAACCCACATGCCCAACATTTCTCTCCCAGCAAAAAGAAAAGGAACGAGTGATATACTTTACAGAAGCGAAGAAGCAGAGAGCGAAAACTGTCATCCTGTGTGATGG--AAATGGAGAAAAGAGGTTACTAGTTGGGCGGGCAGAAAGACTGCTAGGTGACCAGAAAACTTCATTTAGAAAAACTCTGACTTTGA-------ACATGCAGATGGGAAGAGGTGGCTCTGAACATTGTCCTTGGACTCTAAGCCCTTGCTAGGGTAGCTGGCTCCCAAGGCAGGCAAGCAT---GTAAGG-TGTG-------AAGCCTGGACCCCT-CCTCATCCAGTCCTTTCTGCATCAAGGCAA-GAAGGCGAGCAGGAGGGGCTGGAGCCATCACTCAGGGTCC----TGTCATGGCCCAGGCTTAGGCTAAAACTTCCAAGGGAAATGCTTTGGTGGCTGTCCCCACACAACTTTCACTTGTGCTGCCGCAGGCAGTGCCAAGGAGCAGGCCAGGGGCTGGTCAGAGTAGTGGGAACAGGAGGGAAGGCGGAGGCAGCCCACGGGTGGGCAGTGTGCCTGCCATCATCTGCCGTCTTCTAGACAGGAAAATGGGAAATGGTCTTGGCAGTGGGCCACCCCATTCCTATCTAATCTCTGCTTCCTATCAGAAATGGAATGAAACTGGAAGTTAGAAAGTTGCTTTTGACTACATGTTGTCAG-TATCGAGGCTGATACCTGAAGTG-AACTCTGAGATCTAGCTGGGCAGCTTAG----AACAGAAAAGCCT-------------------GAAGCAGTG---------------------------GTCCTGGAACTTTGGTGGATGTGA-GCATC-----------------CTTGAGCACTCAGAGGC-------CCAGGCTCC---TTAGAGGAG-GGAGG---GCCTGGGTTTTGTTTGTCTttttaaccaagtactccaggtgattctgatactcatcgaagtttgaa------aacTCTC---------CAtggtttatataggatggcagtttacttctgtct-tatgtaaaggaaattggaaggtggtacgtctgta-------aagaatctccacagtgataacagaaatctagcctctta-actaggttaagcaagtgcctgcctcccaaactcaaggccag-ctcaaggtcacca-aatgacttcag------tttcagccatcatgcctacattccaagtttagcaaccagagaggaagcagagacgaggcaaaaa--cagccatcctaaatga--atctcctttaagtagccttcct--gaagccccatgcaatgctgatgcctccctttccctgggcagcactgggccatgtggccacatct--agctggaaaag---------gtagtctttt-agctgggcacatcactgccccaaagaaaggtaatgctct i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11328011 2017 + 104110932 CTGT-AGGTATCAGGATTGTTGTTAAGCCTTTTCTAAATGtctg--ttctctcttctttctgttgGTTGGATACAGCCAAGCCCATCCGCCCCGGACACTACCCGGCCTCATCTCCAACGGCCGTCCATGCCATTCGAGGGGGAGGAGGCAGCTCTTCAAACTCCACTCACtaccagaaataaatacaaagtgAGTCCCAT-GTCAAGGGTGGTTTCT--------------------CTatctggaggcagaggcttctTGCCTTTCTAAAACCCCTGCCTGGCAGTGGAC------CTTCAGTAGAGAGGAGTTCAGCTCTATTCTAGCACACGCCCTGGGGGTTCCAGGTAAACAGAGACCC-GACCTACCCTCACTCAGTC--TAGAGCCCTGGGGTCTTCTAGCTGAGGCTGCCTGAGGCCCCTGGGACCTGGAGCCAGGCCGGGCCTAATCCCCTCCAGGGGTAGGTGTG-----GTGAGTGATTCAGctgagctttg-ttttttttgcctGTGGGACTCACCTCTGTAGTTGGCATCCCGTAGGGCATTACCTGTTTGTCAACTGCTTTTACCCAGAGCAGACAGAAGTTGGGGGTTGCTTTAAGTCTCAGAaacagaatataaagaaagagCCAGATAATAG-AAGTGatgtttttatgtttagtatCTGAACTCAACAAATGGGGATTTTAA-GAA---------GATGCCTAGGTGGGTCCAGGGcgcttttttctttgagat----ggtgGTCTGCAAGCTTCTCTGCCCACAACCCACATGCCCAACATTTCTCTCctagcaaaaagaaaaggaacgaGTGATATACTTTACAGAAACGAAGAAGCAGAGAGCGAAAACTGTCATCCTGTGTGatgg--aaatggagaaaagaggTTACTAGTTGGGCGGGCAGAAAGACTGCTAGGTGACCAGAAAACTTCATTTAGAAAAACTCTGACTTTGA-------ACATGCAGATGGGAAGAGGTGGCTCTGAACATTGTCCTTGGACTCTAAGCCCTTGCTAGGGTAGCTGGCTCCCAAGGCAGGCAAGCAT---GTAAGG-TGTG-------AAGCCTGGACCCCT-CCTCATCCAGTCCTTTCTGCATCAAGGCAA-GAAGGCGAGCAGGAGGGGCTGG-----------AGGGTCC----TGTCATGGCCCAGGCTTTGGCTAAAACTTCCAAGGGAAATGCTTTGGTGGCTGTCCCCACACAACTTTCACCTGTGCTGCCCCAGGCAGTGCCAAGGAGCAGGCCAGGGGCTGGTCAGAGTAGTGGGAACAGGAGGGAAGGCGGAGGCAACCCACGGGCGGGCAGTGTGCCTGCCATCATCTGCCGTCTTCTAGACAGGAAAATGGGAAATGGTCTTGGCAGTGGGCCACCCCGTTCCTATCTAATCTCTGCTTCCTATCAGAAATGGAATGAAACTGGAAGTTAGAAAGTTGCTTTTGACTACATGTTGTCAG-TATCGAGGCTGATACCTGAAGGG-AACTC--AGATCCAGCTGGGCAGCTTAG----AACAGAAAAGCCT-------------------GAAGCAGTG---------------------------GTCCTGGAACTTTGGTGGATGTGA-GCATC-----------------CTTGAGCACCCAGAGGC-------CCAGGCTCC---TTAGAGGAG-GGAGG---GCCTgggttttgtttgtctttttaaccAAGtactccaggtgattctgatattcATCGAAGTTTGAA------AACTCTC---------CATGGTTTATACAGGATGGCAGTTTACTTCTGTCT-TATGTAAAGGAAATTGGAAGGTGGTATGTATGTA-------AAGAATCTCCACAGTGATAACAGAAACCTAGCCTCTTA-ACTAGGTTAAGCAAGTGCCTGCCTCCTGAACTCAAGGCCAG-CTCAAGGTCACCA-AATGACTTCCG------TTTCAGCCATCATGCCTACATTCCAAGTTTAGCAACcagagaggaagcagagaagagGCAAAAA--CAGCCATCCTAAATGA--ATCTCCTTTAAGTAGCCTTCCT--GAAGCCCCATGCAATGCTAATGCCTCTCTTTCCCTGGGCAGCACTGGGCCATGTGGCCACATCT--AGCTGGAAAAG---------GTAGTCTTTT-AGCTGGGCCCATCACTGCCTCAAAGAAAGGTAATGCTCT i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34428415 2032 + 128595539 CTGT-AGGTATCAGGATTGTTGTTAAGCCTTTTCTAAATGTCTA--TTCTCTCTTCTTTCTGTTGGTTGGATACAGCCAAGCCCATCCGCCCCGGACACTACCCGGCCTCATCTCCAACAGCTGTCCATGCCATTCGAGGGGGAGGAGGCAGCTCTTCAAACTCCACTCACTACCAGAAATAAATACAAAGTGAGTCCCAT-GTCAAGGGTGGTTTCT--------------------CTATCTGGAGACAGAGGCTTCTTGCCTTTCCAAAACCCCTGCCTGGCAGTGGAC------CTTCAGTAGAGAGGAGTTGGGCTCTATTCCAGCACACGCCCTGGGGGTTCCAGGTAAACAGAGACCCGGACCTACCCTCACTCAGTC--TAGAGCCCTGGGGTCTTCTAGCTGAGGCTGCCTGGGGCCCATGGGACCTGGAGCCAGGCCGGGCCTAATCCCCTCCAGGGGTAGGTGTG-----GTGAGTGATTCAGCTGAGCTTTGTTTTTTTTTGCCTGTGGGACTCACCTCTGTAGTTGGCATCCTGTAGGGCATTACCTGTTTGTCAACTGCTTTTACCCAGAGCAGACAGAAGTTGGGGGTTGCTTTAAGTCTCAGGAACAGAATATAAAGAAAGAGCCAGATAATAG-AAGTGATGTTTTTATGTTTAGTATCTGAACTCAACAAATGGCGATTTTAA-GAA---------GATACCTAGGTGGGTCCAGGGCGCTTTTTTCTTTGAGAT----GGTGGTCTGCAAGCTTCTCTGCCCACAACCCACATGCCCAACATTTCTCTCCTAGCAAAAAGAAAAGGAATGAGTGATATACTTTACAAAAGCGAAGAAGCAGAGAGCGAAAACTGTCATCCTGTGTGATGG--AAATGGAGAAAAGAGGTTACTAGTTGGGCGGGCAGAAAGACTACTAGGTGACCAGAAAATTTCATTTAGAAAAACTCTGACTTTGA-------ACATGCAGATGGGAAGAGGTGACTCTGAACATTGTCCTTGGACTCTAAGCCCTTGCTAGGGTAGCTGGCTCCCAAGGCAGGCAAGCAT---GTAAGG-TGTG-------AAGCCTGGACCCCT-CCTCATCCAGTCCTTTCTGCATCAAGGCAA-GAAGGCGAGCAGGAGGGGCTGGAGCCATCACTCAGGGTCC----TGTCATGGCCCAGGCTTAGGCTAAAACTTCCAAGGGAAATGCTTTGGTGGCTGTCCCCACACAACTTTCACCTGTGCTGCCCCAGGCAGTGCCAAGGAGCAGGCCAGGGGCTGGTCAGAGTAGTGGGAACAGGAGGGAAGGCGGAGGCAGCCCACGGGCGGGCAGTGTGCCTGCCATCATCTGCCATCTTCTAGACAGGAAAATGGGAAATGGTCTTGGCAGTGGACCACCCCATTCCTATCTAATCTCTGCTTCCAATCAGAAATGGAATGAAACTGGAAGTTAGAAAGTTGCTTTGGACTACATGTTATCAG-TATCGAGGCTGATACCTGAAGGG-AACTCTGAGATCCAGCTGGGCAGCTTAG----AACAGAAAAGCCT-------------------GAAGCAGTG---------------------------GTCCTGGAACTTTGGTGGATGTGA-GCATC-----------------CTTGAGCACCCAGAGGC-------CCAGGCTCC---TTAGAGGAG-GGAGG---GCCTGGGTTTTGTTTGTCTttttaaccaagtactccaggtgattctgatattcatcgaagtttgaa------aacTCTC---------CAtggtttatacaggatggcagtttacttctgtct-tatgtaaaggaaattggaaggtggtacgtctgta-------aagaatctccacagtgataacagaaatctagcctctta-actaggttaagcaagtgcctgcctcccgaactcaaggccag-ctcaaggtcacca-aatgacttcag------tttcagccatcatgcctacattccaagtttagcaaccagagaggaagcagagaagaggcaaaaa--cagccatcctaaatga--atctcctttaagtagccttcct--gaagccccatgcgatgctgatgcctccctttccctgggcagcactgggccatgtggccacatct--agctggaaaag---------gtagtctttt-agctgggcacatcactgcctcaaagaaaggtaatgctct i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87912423 2023 - 158406734 CTGT-AGGTGTCTGGGCTGCTG-TAAGCC-TTTCTAAATGTCTG--TTCTCTCTTCTTTCCACTGGTTGGATACAGCCAAGCCCATCCGGCCCGGACACTACCCAGCCTCATCTCCAACGGCTGTTCATGCCATTCGAGGGGGAGGAGGCAGCTCTTCAAACTCCACTCACTACCAGAAATAAATACAAAGTGAGTCCCAT-GTCAAGGGTGGTTTCT--------------------CTATCTGGAGGCAGAGCCTTCTTGCATTTCCAAAGCCCCTGCCTGACAGTGGAC------CTTCAGTAGAGAGCAGTTCAGCTCTACTCCAGCACAGGCCCTGAGGGTTCCAGGTAAACAGAGACATGGACTTTCCCTCAATCAGTT--GAGAGCCCTGGGGTCTTCTAGCTGAGGCTGCCTGGGGCCCATGGGACCTGGACCCAGGCCTGGCCCAGTTCCCTTCAGCGGTAGGTGTG-----TTGAGTGATTCAGCTGAGCTTTG-----TTTTGCTGGTGGGACTCCCCTCTATAGTTGGCATCCCAAAGGGCATTACCTGTTGGTCAACTGCTTTAACCCAGAGCAGATAGAAGTTGGGGGTCACTTTAAGTCTCAGCGACAGAATATAAAGAAAGAGCCAGATAAAAGAAAGTGATGTTTTTATGTTTACTATCTGAACTCAGTAAGTGGGGGGTCTAAGGAA---------TATATCTAGGTGGGTCCAGAGCACTTTTTTCTTTGAGAT----GGTGGTCTGCCAGCTTCTCTGCCCAC-ACCCACATGCCTGACATTGCTCTCCCAGCAAAAAGAAAAGGAACAAGTGATATGATTTACGAAAGAGAAGAAAGAGAGAGTGAAAAC---CATCCTTTACAATGG--AAATGGAGAAAAGAGGCTACTGGTTGGGCAGGCAGACAGATGACTAGGTGACCAGAAAACTTTGTTTAGAAAAACTCTGACTTTGA-------ACATGCAAATGGGAAGAGGTGTCTCTGGACATTGTCCTTGGACTGTAAGCCCTTACTAGGGCAGCTGGCTCCCAAGGCAGGCAAGCAT---GCCCGA-TGTG-------AAGCCTAGATTTTT-CCTTATCCATTCGTTTTTGCCTCAAGGCAA-GAAGGCCAGCAGGAGAGGCTGGAGCCGTCACTCCAGGTCT----GGGCATTGCTCAGGCTTAGGCTAATACATCCAAGGGAAATGCTTTGGTGACTGTTCCCACACAACTTTCACCTGTGCTGCCCCAGGCAGTGCCAAGGAGCAGACCAGGGGCTGGTCAGAGTAGCAGAAACAGGAGGGAAGGTGGAGGCAGCCCACGGGCGGGGAGTGTACCTGCCAGCATCTGCCGTCTTCTAGACAGGAAGATGGGACATGGTCTTGGCAGTGGGCCACCCCATTCATATCTAATCTCTGCTTCCAATCAGAAGTAGAATGAAACTGGAAGTTAGAAAGTTGCTTTTGACTACATGTTGTCAGTTATCGAGGCTGATACCTGAAGGA-AACTTTGAGATCCAGCTGGGCAGCTTAG----AACAGAAAAGCCT-------------------GAAGCAGTG---------------------------GTCCTCAAACTTTGGTGGATGTGA-GCATC-----------------CTCGAGCACCCAGAGTC-------CCAGGCTCC---TTAGAggag-ggagg---gcct-ggctttgtttgtcatttcaaccaagtattccaggtgattctgatattcatcaaagtttgaa------aacTCTC---------CAtggtttatataggatagtagtttacttctgtcc-tatgtccaggaaatttgaaggtggtgtgtcagtagct----gagcatctccacagtgatgacagaaacctagcttctta-actagattaagcaagtgcctgcctcctgagctcaaggccag--tcaaggtcacca-aatgacttcag------tttcagccatcatgcctatattccaagtttagcaaccagagaagaagcagaggagaggcgaaag--cagccatcctgaatga--atc-cctttaagtagctttcct--gaagccccatgcaatgctgatgcctccctttccctgggcagccctgagccacatggccacatct--agctggaaaa----------gtagtctttt-agctgggcacttcactaccccaaagaagggtaatgctct i calJac3.chr6 C 0 C 0 s mm10.chr2 49758779 1938 + 182113224 ----------------------------------------GTTC--TTCTCTCTCCTTTCTC----TGGGATATAGCCAAGCCCATCCGCCCAGGCCATTACCCAGCATCATCTCCGACAGCTGTCCATGCCGTCCGAGGAGGAGGAGGTGGCTCTTCAAACTCTACTCACTACCAGAAATAAA-GCAGAGTGAGTCCTGCAGCCTGGGGTATTTTCTCTTTGCAGCAGCCCCGGGGCCTACCTGGGGGCATTGCCCTCTTGACACTCTGAAACCCTACCCTGGCCTTTAGCCATATTCTCTAATAGAGATATGTTCATCTCTGTTCCAGGAAGAGGGCTGGGA--TCCAGGTAAG-AGAAATCTGGGCCTAGCTTTGC-CAGCCCATATAGCCAAAGGATCCTCTAGT--------CACAGGGCTGGTGCAACTCTGAGCCAGGCATGGCCTAATCACCTC------TCAGGTTG-----ATGAGTGCTTCATCTAGGGTTTG---------GACTGTGGGACTTCCCTCCGCAGCTGAATCTACAAAGCG----------------------------------AGACAGAAGTAAGGGGTGGCTTTAAGTCTCAGGAATGGGATACAATGAGCGGGTTAT--------GAGTCATATTTTTATCATTATTGTGAG-CCTCGATAAATGGGGGTTTGAA-GAATGTGTAGTTTATATTTAAGTGGGGCTAGACCAC-TTTTTCTTTGAGACAGCGAGTGGTCTGTGAGCCCCAGTTCCTACCACTTGGATGTTCATTATTGCTCTGACAGTAAAA-----------GAGTGATATGCTTT-TGGGAGAGAAACAGGA-AGAGGTACGCCTGTC--CC----TAGTAGCTGAATACAGAA---AGATTCCCAGTCAGGCTGGCAG-TGGATAGTAGGGGGCTCAGAAAAC--------------CGCAGACTTGGA-------GTGTGTAGATGGAAAGGGATGA-TCACAAAGTGACTCCTGGGCTCTGAGCCCTCACTAGGGAGGCTAGCTGACAGAGCAGGGGAGCATCAATCAAGG-CATGCCTTGGTGATCCAGAGCAACTGATTTAGCCAGTGCTTTTAGAATC--------GCATTTGAAGTGAATGGTCCAGGGC--------AGAATGA----CGGCATTACTAAGGCCCA-GCTGCAGGCTTCAGGAAGGGTGCTTCTGTGT-------------AGCTTTACATAAACAGCC-------------AGGAATTAGCCAAGGTCTGGCCAGGTGAGTGGGAACCAGAGGGCAGGCCTAGGCCGTCTGCACTGGGCCAACACA-CTGGGAGTATC-ACTGTATCTCAG----------------TGAGTTGGACTGTAAGTCA-CCCATTCAAGTCCAAAACGTGCTTCTAGTCTGAAATAAAATCAAATTGGATATTACTGAATTGTTTTTGATTGCATGTTGTCAG-GACCAAGGACAAAATCTGAAAGGTGGCTATTGG--------GGGCTGTTTAGGAAAAAAAAAAAAGCCTCAAATTCTTGTGTGGGCTGGAGGCAGAGGGCAGGGGTGGGGTGTGCACTTAGCATGTAAGGGAACTGGGTTCAGTACAATGCAACAGTAATAAAGGTACCAGCTTAGGTAGGTAAAGGACAACAGGCCAGGCTAC----TAGCGGAG-TGGGGCCTACCTGGACT---TCTCTGTTTTTAACCAAGAATGGCCAGTGGTTTTGATATCCAGCAAAAAATATAATACCTACTTCTCTGTAGTAAGCAGGGCTCATATACAATGATAGTT--------TCT-CATGGGCAGGAAGTGCAAGGGCTGGGTA----TAGTT----AGTAAGGTCTGTAGAGACCACAGAATCTCAGACTATTAGACTCTGTCC--TCTGTGGGTGCCTCCTTTCCTTGGCGTTGC-CTCATGGCCTCCAGAATGACTTCTGCTAGACCTTCAGCT-CCGTGTCTTCTTTGCAGGAGTTGTATCCCAAGAAGAAGCCAGGGTGAGGCAAAGG--CAGCTCTCCTGGCCA------------CAGCAGCCTCCCTCAGAGTACCCATGCAAAACTGAAGTCTAAATG--CCTGGAT----CAGAGGCATGTGGCCACATAGGAGACTAGAAAAG---------GCAG--CTTT-ATCTGGGTACATTGGCGCCCCAGAAGGGagttaggtttt i mm10.chr2 C 0 I 3269 s canFam3.chr19 50668548 1890 + 53741614 CTGG-GGGCACCTGGGGAG------GGCCGCTCCAGCCCGTCTGAACCCTCTGTCCTTTCTG----TCCGATCCAGCCAAGCCCATCCGCCCCGGACACTACCCGGCGTCATCTCCAACGGCTGTCCACGCCATCCGAGGGGGAGGAGGCGGCTCTTCGAACTCTGCTCACTACCAGAAATAAATAC-GAGTGAGTCCCCG-GTGTCGGGTGGTTTCT------------GTGAGGGGCTGCCCTGGGGCGG-------------------ACCCTCCGCGTGCATGTGTCC------CTGCAGTCGTGGGCAGGTCACCTCC---CTGGGACAGGCCCCAGCG-------------CGTAGCTC--ACCCAGCCTCAAGCCCTC--TAGAGCCTCGGGGTCTCCTAGCTGGGGCCACCT--GGCTCTGGGGAC------------------------CCTCCGGGGACGGATGAGGGCGTGGGAGTGATCCCCCT-CGCTTCC-----TTTTGTCTGTGGGACTTCCCGGCGTAGCTGGCATGCAGAGGGGCATTACCTGTTTGTCAGCTGCTTTCGCCCAGAGCGGGCAGGTGTGGGTGGTCGCTGTAATTCTCAGGAACCGAATGCAAAGACAGAGCCACAT-ACAGAAAGTCCTACTCTTCTAATTGCTACCCGAGCTCAACTGACGGGGCTTCTTA-G-----------CGTATCGAGGCGGGTCAGGGCCACGCTTTCCTTTGAGAT----GGCGGACTACGCGTCTCTTCACCTAC-AGTCACCTGCGTGATACTACCACACCGGCCAGCAAACAGACAAGACGTGGTGCACTTTACGAAAGAGAAGGAAGCAGGAGCGCAGACTGT--TCCTTAGTACTTG--AGATGGGGAAGAGAGGTTGCTGGG-GGGCGGCCCG----------------------AGCGCTGTGTAGGGGAACTCCGGCCCTGAGCCAGTGACCTGTGGGTGCGAA-CGGTAGCTCCAAATGTTGCCCGTGGGCCCTGAGCCCTCACTAAGGGAG-TAGCTTGCAGGCTGGGCAGGCGG---GCCGCC-TCAG-------GAG---GGACCCGT-TCCTCTCCCGTC--TTTTGGGTCAAGGTAAGGGAGGTGGACGCGAGGGGCTGGAGCCCTGTCTCCGGGTCTATGACCGCATGGC-CAGGGTCGTGCACACACTGCCCAGGAGGAAGCTT-GGTGGCTGCGCCCAGACAGC-----------------------ACGCCAGGGAGCAGGACGGCTACTGGCCAG----GTCGGGGCAGGGAGGAGGGCCGAGGCAGCGCACGGGCAGGCAACATGTCCA-CACCGTCTGCCGTATCCTGGAAGGGTGGGTGGGACAGCGTCTCGGCAGCGGGCCACCCCCTTCAGATCCGATC---GCTTCCAATCACAAACACGAT-ACTTTGGATGTTAGGAAATTGCTTGTGGCTGCATGCTGTTGG-TGTTGGAGTGGGCACTTGGGGGG-CCCTGCGGGGCAC-GTGGGGCAGCCTAG----AGGAGAGAAG-CT-------------------AGAGCAGCG---------------------------GTTCTCGAACTCGGGCAGGCGTCG-GTGTC-----------------CC--AGGTGCCAGGGAC-------GTCCGCTACTGCTTCGGGTAGCGTGGG---GCCCGG----------------------------CCAGGCGATT-GGTCAGCCACCAAAG-CTGAG------ACCTCTCCTCAAGTACCGTGGCCTACGTGGGACGG--GCGCGCATCTCTCTGCGTGTTCGGGAAGCCGGAGGGTGGTCTGTCGGTGGCTAGGAGAGGGACTCTCCAGTGACAACACAAAGCTCGCCCTTTA-AAT---TCAGAC---TCCCTGTGTCCTCAGCAGATCTCCTTCCTCGAGGTCACTT------CGCCGA------CCTCCACTGTTCTGTC----TCTCACGGTTGGCAAGCAGAG-GGACGCCGGG--GAGGCACTAG--CAGCTCTCCGAACCGATcctcttcctttagtggccttcct--ggaagtccacacggtcctgatgcctgcagctctctggccagatcggaggctcgaggccccgtcc--agctgcaagggcggctggaaGTGGCTTCTTGAACTAGGCACGTCCCTGCCCCGCAGAAGAGTGGTGTCCT i canFam3.chr19 C 0 C 0 a score=1243492.000000 s hg38.chr2_GL582966v2_alt 85534 395 + 96131 tagagcaaggacagggagagtggatgttgaggtgggcagctggcatactgtgcATTATGGACCACCTAATATGCTGCAGCACTGGGCTAGATGTAATATAGGCATCACCTCATTTGATGAAAGCACACATAGAG--GTGTATGTGTGTTTCCCAGCAAGGCCTTACTAAATATACTGGTCCAGGGATTCTGGGGTCCAGAGATTGTGCAGTGGGACAGTCACCTTCTTCATGGGTTCCAACAAAGGTCTGCCAGTCCCATATTTTATGTAGGCTCCAAACAACCAAATGCTGGCCATTCATCACCAGTGTAGCCTCTTCTCATACAGAAGAGTGAAAATCAGTAGGTCTGGGGAGACTTTCAAGACCTTCGGAGTGAAAGAACCACCCTCACCCATT s panTro4.chr2B 153198338 395 + 247518478 tagagcaaggacagggagagtggatgttgaggtgggcagctggcacactgtgcATTATGGACCACCTAATATGCTGCAGCACTGGGCTAGATGTAATATAGGCATCACCTCATTTGATGAAAGCACACAGAGAG--GTGTATGTGTGTTTCCCAGCAAGACCTTACTGAATATACTGGTCCAGGGATTCTGGGGTCCAGAGATTGTGCAGTGGGACAGTCACCTTCTTCATGGGTTCCAATAAAGGTCTGCCAGTCCCATATTTTATGTAGGCTCCAAACAACCAAATGCTGGCCATTCATCATCAGTGTAGCCTCTTCTCATACAGAAGAGTGAAAATCAGTAGGTCTGGGGAGACTTTCAAGACCTTCGGAGTGAAAGAACCACCCTCACCCATT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38405182 397 + 135000294 tagagcaaggacagggagagtggaggtaggggtgggcagctggcacactgtgcATTATGGACCACCTAATATGCTGCAGCACTGGGCTAGATGTAATATAGGCATCACCTCATTTGATGAAAGCACGCAGAGAGATGTGTATGTGTGTTTCCCAGCAAGACCTTACTAAATATACTGGTCCAGGGATTCTGGGGTCCAGAGATTGTGCAGTGGGACAGTCACCTTCTTCATGGGTTCCAACAAAGGTCTGCCAGTCCCATATTTTATGTAGGCTCCAAACAACCAAATGCTGGCCATTCATCACCAGTGTAGCCTCTTCTCATACAGAAGAGTGAAAATCAGTAGGTCTGGGGAGACTTTCAAGACCTTCGAAGTGAAAGAACCACCCTCACCCATT i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82357775 390 - 85365473 tagggcaaggacagggagagtggatgttggggtgggcagctggcacactgtgcAttgtggagcacctaatatgccgcggcactgggctagatgtaatataggcatcacctcatttgatGAAAG----CAGAGAGGTGTGTATGTGTGTTTCCCAGCAAGACCTTACTAAATATACTGGTCCAGGGATTCTGGGGTCCAGAGATTGTGCAGTGGGACAGTCAC---CTTCATGGGTTCCAACAAAGGTCTGCCAGTCCCATATTTTAGGTAGGCTCCAAACAACCAAATGCTGGCCATTCATCACCAGTGTAGCCTCTTCTCATACAGAAGAGTGAAAATCAGTAGGTCTGGGGAGACTTTCAAGACCTTCAGAGTGACAGAACCACCCTCACCCATT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11969415 395 + 106825570 ttgagcaaggacagggagagtggatgttggggtgggcagctgacacactgtgccttatggaccacctaatatgccgcagcactggcctagatgcactacaggcatcacctcatttgatGAAAGCA--CAGAGACATGTGTATGTGTGTTTCCCAGCAAGACCTTACTAAATATACTGGTCCAGGGATTCTGGGGCCCAGAGATTATGCAGTGGGACAGTCACCTTCTTCATGGGTTCCAACAAAGGTCTGCCAGTCCCATATTTTATGTAGGCTCCAAACAATCAAATGCTGGCCATTCATCACCAGTGTAGCCTCTTCTCATACAGAAGAGTGAAAATCAGTAGGTCTGGGGAGACTTTCAAGACTGTTGGAGTGACAGAACCACCCTCACCCATT i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37672851 395 + 132586672 ttgagcaaggacagggagagtggatgttggggtgggcagctgacacactgtgccTTATGGACCACCTAATATGCCGCAGCACTGGCCTAGATGCACTACAGGCATCACCTCATTTGATGAAAGCA--CAGAGACATGTGTATGTGTGTTTCCCAGCAAGACCTTACTAAATATACTGGTCCAGGGATTCTGGGGCCCAGAGATTATGCAGTGGGACAGTCACCTTCTTCATGGGTTCCAACAAAGGTCTGCCAGTCCCATATTTTATGTAGGCTCCAAACAATCAAATGCTGGCCATTCATCACCAGTGTAGCCTCTTCTCATACAGAAGAGTGAAAATCAGTAGGTCTGGGGAGACTTTCAAGACTGTTGGAGTGACAGAACCACCCTCACCCATT i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11330028 395 + 104110932 TTGAGCAAGGACAGGGAGAGTGGATGTTGGGGTGGGCAGCTGACACACTGTGCATTATGGATCACCTAATATGCCGCAGCACTGGCCTAGATGCACTACAGGCATCACCTCATTTGATGAAAGCA--CAGagacatgtgtatgtgtgtttcccAGCAAGACCTTACTAAATATACTGGTCCAGGGATTCTGGGGTCCAGAGATTATGCAGTGGGACAGTCACCTTCTTCATGGGTTCCAACAAAGGCCTGCCAGTCCCATATTTTATGTAGGCTCCAAACAACCAAATGCTGGCCATTCATCACCAGTGTAGCCTCTTCTCATACAGGAGAGTGAAAATCAGTAGGTCTGGGGAGACTTTCAAGACCGTTGGAGTGACAGAACCACCCTCACCcatt i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34430447 395 + 128595539 ttgagcaaggacagggagagtggatgttggggtggacagctgacacactgtgccTTATGGATCACCTAATATGCCGCAGCACTGGCCTAGATGCACTACAGGCATCACCTCATTTGATGAAAGCA--CAGACACATGTGTATGTGTGTTTCCCAGCAAGACCTTACTAAATATACTGGTCCAGGGATTCTGGGGTCCAGAGATTATGCAGCGGGACAGTCACCTTCTTCATGGGTTCCAACAAAGGTCTGCCAGTCCCATATTTTATGTAGGCTCCAAACAACCAAATGCTGGCCATTCATCACCAGTGTAGCCTCTTCTCATACAGAAGAGTGAAAATCAGTAGGTCTGGGGAGACTTTCAACACCGTTGGAGTGACAGAACCACCCTCACCCATT i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87914446 394 - 158406734 ttgagcaaggacagggagagtggaggttg-ggtgggcagctggcatgctgtgcATTATAGATCACCTAATATGCCGCAGCACTGGGCTAGATATAATACAAGCCTTACCTCA-TCGATGAAAGCACACAGAGAGATGTGTAGGTATGGTTCCCAAAAAGACCTTACTCAATATACTGGTCCAGGGATTCTGAGCTCCAGAGATTATGCAATGGGACAGTCACCTTCTTCAAGGATTCCAACAAAGGTCTGCCAGTCCCACATTTTGTGTAGCCTCCAAACAACCAAATCCTGGCCATTCATCACCAGTGTAGCCTCTTCTCATACTGAAGCATGAAAATCAGTAGGTCTGGTG-GACTTTGAAGACCTTTGAAGTGGCAGAACCACCCTCACCCATT i calJac3.chr6 C 0 C 0 s canFam3.chr19 50670438 336 + 53741614 --GTGGCTGGAGACGAGGCGGTGATGTTGGGCCGGGCCACAG--AACCTGTTCATCGAGGCCCGC----TGTGCCGCGGTGTCATGACCGCAGCAGCACCTACATTACCCCGTTCGATGGAAGCACACGGAGAAGGGTCTGTGCTTGGCTCCCGGCAAGCTCTTAGT-AACACCCTGGCCCAGGGGCTCTGGG-TCCAGAGAC--TGCAGTGGG-CAGCCGCTGTGCTCA-GCAACCCCGCGCAGGC--GTCAGACCCGCGTTTTGTGTGAGATCCCTACAGCCACGTGTT----------------------CCCTTCCCAC-CTTGAGCCTGACAAGCGGTGGGCCTG----------------------ACTGATGGGACCACCCCCACCCCTC i canFam3.chr19 C 0 C 0 e mm10.chr2 49760717 3269 + 182113224 I a score=716571.000000 s hg38.chr2_GL582966v2_alt 85929 252 + 96131 GTGGC----Atttttt--tttaattttactttaagttctgggatacatgtgctcaatgtccaggtttgtcacataagtatacatgtgccatgatggtttgctgcacccatcaacccatcatcATCttttcgagatggagtttcactcttgttgcccaggctggagtgcaatggcatgatcttggctcactgcatcctctgcctcctgggttcaaacgattctcctgcctca-gcctcccgagtagctgggattacaggc s panTro4.chr2B 153198733 252 + 247518478 GTGGC----Atttttt--taaaattttactttaagttctgggatacatgtgcttaatgtccaggtttgtcacataagtatacatgtgccatgatggtttgctgcacccatcaacccatcatcATCttttcgagatggagtttcactcttgttgcccaggctggagtgcaatggcatgatcttggctcactgcatcctctgcctcctgggttcaaacgattctcctgcctca-gcctcccgagtagctgggattacaggc i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38405579 253 + 135000294 GTGGC----Attttttaaaaaaattttactttaagttctgggatacatgtgctcaatgtccaagtttgtcacataagtatacatgtgccatgatggtttgctgca-ccatcaacccatcatcATCtttttgagatggagtttcactcttgttgcccaggctggagtgcaatggcatgatctcggctcactgcatcctctgcctcctgggttcaaacgattctcctgcctca-gcctcccgagtagctgggattacaggc i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82358165 254 - 85365473 ATGGC----ATTTTTAAAAAAAattttactttaagttctgggatacatgtgctgaatgtgcaggtttgtcacgtaggtatacatgtgccatgatggtttgctgcacccatcaacccatcatcATAtttttgagatggagtttcactcttgttgcccaggctggagtgcaatggcatgatctcggctcactgcaacctctgcctcctgggttcaaacgattctcctgcctca-gcctcctgagtagctgggattacaggc i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11969810 254 + 106825570 ATGGC---Tttttttttttttaattttac-ttaagttctgggatacatgtgctgaatgtccaggtttgtcacataggtatacacgtgccatgatggtttgctgcacccatcaacccatcatcATCtttttgagatggagttttgctcttgtcgcccaggctggagtgcaatggcatgatctcggctcgttgcaacttctgcctcctgggttcaaatgcttcttctgcctta-gcctcccgagtagctgggattacaggc i rheMac3.chr12 C 0 I 194 s macFas5.chr12 37673246 254 + 132586672 ATGGC---Tttttttttttttaattttac-ttaagttctgggatacatgtgctgaatgtccaggtttgtcacataggtatacacgtgccatgatggtttgctgcacccatcaacccatcatcATCtttttgagatggagttttgctcttgtcgcccaggctggagtgcaatggcatgatctcggctcattgcaacttcttcctcctgggttcaaatgcttcttctgcctta-gcctcccgagtagctgggattacaggc i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11330423 256 + 104110932 atggc-tttttttttttttttaattttac-ttaagttctgggatacatgtgctgaatgtccaggtttgtcacataggtatacacgtgccatgatggtttgctgcacccatcaacccatcatcatctttttgagatggagttttgctcttgtcgcccaggctggagtgcaatggcatgatctcggctcattgcaacttctgcctcctgggttcaaatgcttcctctgcctta-gcctcccgagtagctgggattacaggc i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34430842 253 + 128595539 ATGGC----Atttttttaaaaaattttac-ttaagttctgggatacatgtgctgaatgtccaggtttgtcacataggtatacacgtgccatgatggtttgctgcacccatcaacccatcatcATCtttttgagatggagttttgctcttgtcgcccaggctggagtgcaatggcatgatctcggctcattgcaacttctgcctcctgggttcaaatgcttctcctgcctta-gcctcccaagtagctgggattacaggc i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87914840 254 - 158406734 ATGGCAGTTATTAtttttttaaattttactgaaagttctgggatatatgtactgcatgttcaggtttgttacatcg--atacgtgtgccatgatggtttactgcacctgtcaacccatcatc---tttttgagatggagttttgcttttgtcacccaggctggagtgcgatggcatgatctcggctcactgcaacctccgccttctgggttcaaacaattctcctacctcatacctcctgagtagctgggattacaagc i calJac3.chr6 C 0 C 0 e canFam3.chr19 50670774 0 + 53741614 C e mm10.chr2 49760717 3269 + 182113224 I a score=451304.000000 s hg38.chr2_GL582966v2_alt 86181 154 + 96131 atgtgccaccatgcccagctagtttttgtatttttagtagagacagggtttcaccatgttggccaggctggtcttgaactcctaacttcaagtgattccccccacctcagcttcccaaagtgctgggattacaagcgtgagctactgcacccag s panTro4.chr2B 153198985 154 + 247518478 atgtgccaccacgcccagctagtttttgtatttttagtagagacagggtttcaccatgttggccaggctggtcttgaactcctaacttcaagtgattccccccacctcagcttcccaaagtgctgggattacaagcgtgtgctactgcacccag i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38405832 154 + 135000294 atgtgccaccacgcccagctagtttttgtatttttagtagagacagggtttcaccatgttggccaggcttgtcttgaactcctaacttcaagtgattccccccacctcagcttcccaaagtgctgggattacaggcgtgagatactgcacccag i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82358419 151 - 85365473 atgtgccaccatgcccagctagtttttgtgtttttagtagagacggggtttcaccatgttggccaggctggtcttgaactcctgacctca--tga-tccacccacctcagcctcccaaagtgctgggattacaggtgtgaactactgtgcccag i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11970258 154 + 106825570 ATgtgctaccacgcccggctagtttttgtatttttagtagagacagggtttcaccatgttggccaggctggtcttgaactcctgacctcaagtgactccccgcacctcagcttcccaaagtgctgggattccaggcgtgagccactgcacccag i rheMac3.chr12 I 194 C 0 s macFas5.chr12 37673500 154 + 132586672 atgtgctaccacgcccagctagtttttgtatttttagtagagacagggtttcaccatgttggccaggctggtcttgaactcctgacctcaagtgactccccgcacctcagcttcccaaagtgctgggattccaggcgtgagccactgcacccag i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11330679 154 + 104110932 atgtgctaccacgcccggctagtttttgtatttttagtagggacagggtttcaccatgttggccaggctggtcttgaactcctgacctcaagtgactccccccacctcagcttcccaaagtgctgggattccaggcgtgagccactgcacccag i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34431095 154 + 128595539 atgtgctaccacgcccggctagtttttgtatttttagtagagacagggtttcaacatgttggccaggctggtcttgaactcctgacctcaagtgattccccccacctcagcttcccaaagtgctgggattacaggcatgagccactgcacccag i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87915094 153 - 158406734 atgctccaccacacccagctaatttttgcctttttagtagagaaggggttttaccatgttgtccaggtttgtcttgaactcctgaccacaagtga-tctgcccacctcagcttcccaaagtgctgggattactggcatgagcctctgcacctgg i calJac3.chr6 C 0 C 0 e canFam3.chr19 50670774 0 + 53741614 C e mm10.chr2 49760717 3269 + 182113224 I a score=64855.000000 s hg38.chr2_GL582966v2_alt 86335 18 + 96131 cTGGCAATTTGTTTCTTT s panTro4.chr2B 153199139 18 + 247518478 cTGGCAATTTGTTTCTTT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38405986 18 + 135000294 ctGGCAATTTGTTTCTTT i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82358570 18 - 85365473 cTGGCAATTCGTTTCTTT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11970412 18 + 106825570 cTGGCAATTTGTTTCTTT i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37673654 18 + 132586672 cTGGCAATTTGTTTCTTT i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11330833 18 + 104110932 ctggcaATTTGTTTCTTT i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34431249 18 + 128595539 cTGGCAATTTGTttcttt i chlSab2.chr10 C 0 I 386 s calJac3.chr6 87915247 18 - 158406734 ccGGCAATTTATTTCTTT i calJac3.chr6 C 0 C 0 s canFam3.chr19 50670774 18 + 53741614 CTGGTGGTGCGTTGCTTT i canFam3.chr19 C 0 I 5 e mm10.chr2 49760717 3269 + 182113224 I a score=260155.000000 s hg38.chr2_GL582966v2_alt 86353 124 + 96131 ACTCAAAGTGTT-ACAAGTGGTTTTGATGGTTTTATCTGAATTCAGAGCCTCCTTGACATACCTTCTCCACACAGCTTCAGACACAGCTTCTGTA---ACTAGGTGCTTCTCTCACCAGGTTACAAAA s panTro4.chr2B 153199157 125 + 247518478 ACTCAAAGTGTTAACAAGTGGTTTTGATGGTTTTATCTGAATTCAGAGCCTCCTTGACATACCTTCTCCACACAGCTTCAGACACAGCTTCTGTA---ACTAGGTGCTTCTCTCACGAGGTCACAAAA i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38406004 127 + 135000294 ACTCAAAGTGTT-ACAAGTGGTTTTGATGGTTTTATCTGAATTCAGAGCCTCCTTGACATACCTTCTCCACATAGCTTCAGACACAGCTTCTGTAACTACTAGGTGCTTCTCTCACCAGGTCACAAAA i ponAbe2.chr2b C 0 M 131 s nomLeu3.chr20 82358588 124 - 85365473 ACTCAAAGTGTG-ACAAGTGGTTTTGATAGTTTTATCTGAATTCAGAGCCTCCTTGACATACCTTCTCCACACAGCTTTAGACACAGCTTCTATA---ACTAGGTGCTTCTCTCACCAGGCCACAAAA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11970430 112 + 106825570 ACTCAAAGTTTT-AAAAGTGGTTTTGATGGATTTATCTGAATTCAGAGCCTCCTTAACACACCTTCTCCACAT------------AGCTTCTGTA---ACTAGGTGCTTCTTTCATCAGGTCACAAAA i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37673672 112 + 132586672 ACTCAAAGTTTT-AAAAGTGGTTTTGATGGATTTATCTGAATTCAGAGCCTCCTTAACACACCTTCTCCACAT------------AGCTTCTGTA---ACTAGGTGCTTCTTTCATCAGGTCACAAAA i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11330851 112 + 104110932 ACTCAAAGTTTT-AAAAGTGGTTTTGATGGTTTTATCTGAATTCAGAGCCTCCTTAACACACCTTCTCCACAT------------AGCTTCTGTA---ACTAGGTGCTTCTTTCATCAGGTCACAAAA i papAnu2.chr12 C 0 C 0 s calJac3.chr6 87915265 112 - 158406734 ACTCAAAGTGTT-CCAAGTGCTTTTGATGGTTTTATCTGAATTCGAAGCCTTCTTGACACACCTTCTCCATAC------------AGCTTCTGTA---ACTAGGTGCTTCTCTCATCAGCTCACAAAA i calJac3.chr6 C 0 C 0 s canFam3.chr19 50670797 112 + 53741614 ACCTGAAGAGTC-CTAAGTGGATTTGGTTATTCGATCTGCACTTGGAAGCTCC-TGACCCACTGTATGCGCAC--------CGGCACCTCCGGTA---GCCCGGCGCCGTCCCCACATGGCAACT--- i canFam3.chr19 I 5 C 0 e mm10.chr2 49760717 3269 + 182113224 I e chlSab2.chr10 34431267 386 + 128595539 I a score=821659.000000 s hg38.chr2_GL582966v2_alt 86477 428 + 96131 TAAACAGGCCCCCTCTTACAGCTCTcaggatggcagtgtggctgaggggactggcattggacaagggacctgggttcaggtgttaggtcttccacttccttcaagttacttaaactcag-gtctgtttcctcatatatgaaatggggaaaatcttttatgttggtcattggcattgacagaaggcttaaatgaggtcatgcttctaagcccataacaattgctcaataaaaatgttagctgctagtatAGATGAGCACTGC-AGAAGGTGGTA----GTTGATACATGTTGGTTTATAGTGTCCTTTAATTCATATAGTTGTTACTAAATGGTTTTTAGTTCCTCTATAGCAATAAATCCTGGCGACTGGATAGGGAAGGCCTATTTCTAACTGAGTATCCTAGTTGTTGCTATGAACTGACATAAGGGCTTTT s panTro4.chr2B 153199282 428 + 247518478 TAAACAGGCCCCCTCTTACAGCTCTcaggatggcagtgtggctgaggggactggcattggacaagggacctgggttcaggtgttaggtcttccacttccttcaagttacttaaactcag-gtctgtttcctcatatatgaaatggggaaaatcttttatgttggtcattggcgttgacagaaggcttaaatgaggtcatgcttctaagcccataacaattgctcaataaaaatgttagctgctagtatAGATGAGCACTGC-AGAACGTGGTA----GTTGATACATGTTGGTTTATAGTGTCCTTTAATTCATATAGTTGTTACTAAATGGTTTTTAGTTCCTCTATAGCAATAAATCCTGGCGACTGGGTAGGGAAGGCCTATTTCTAACTGAGTATCCTAGTTGTTGCTATGAACTGACATAAGGGCTTTT i panTro4.chr2B C 0 C 0 s nomLeu3.chr20 82358712 410 - 85365473 TAAACAGGCCCCCTCTTACAGCTCTcaggatggcagtgtggctgaggggactggcattagacaaggaacctgggttcaggtgtcaggtcttccacttccttcaagttacttaaactcagagtctgtttcatcatatatgaagtggggaaaatcttttatcttggtcattggcattgacagaaggcttaaatgaggtcatgcttctaagcacataataattgctcaataaaaatgttagctgctagtaCAGCTGAGCACCAC-AGAACATGGTA----GTTGATACATGTTGGTTTATAGTGTCCTTTAATTCATATAGTTGTTACTAAATGGGTTTTAGTTGCTCTACAGCAATCAATCCTAGCCACTGGGTAGGGAAGGCCTATTGCTAACTGAATATCCTAGTTGTTGCTATG------------------- i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11970542 429 + 106825570 TAAACAGGCCCCCTCTTACAGCTCTcaggatggcagtgtagctgaggggactggcattggacaagggacctgggttcaggtgtcaggtcttctacttccttcaagttacttaacctcagaatctgtttcctcgtctatgaaatggggaaaatcttttattttggtcattggcattgacagaaggcttaaatgaggtcatgcttctaagcacataacaattgctcaataaaaatgttagttgctaGTATAGATGAGCACTGC-AGAACATCGTA----GTTGATACATGTTGGTTTATAGTGTCCTTTAATTCATATAGTTGTTACTAAATGGTTTTTAGTTCCTCTATAGCAGTAAATCCTAGCCACTGGGTAGGGAAGGCTTATTTCGAACTGAGTATCCTAGTTGTTGCTATGAGCTGATATAAGGGCTTTT i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37673784 429 + 132586672 TAAACAGGCCCCCTCTTACAGCTCTcaggatggcagtgtagctgaggggactggcattggacaagggacctgggttcaggtgtcaggtcttctacttccttcaagttacttaacctcagaatctgtttccttgtctatgaaatggggaaaatcttttattttggtcattggcattgacagaaggcttaaatgaggtcatgcttctaagcacataacaattgctcaataaaaatgttagttgctaGTATAGATGAGCACTGC-AGAACATCGTA----GTTGATACATGTTGGTTTATAGTGTCCTTTAATTCATATAGTTGTTACTAAATGGTTTTTAGTTCCTCTATAGCAGTAAATCCTAGCCACTGGGTAGGGAAGGCTTATTTCTAACTGAGTATCCTAGTTGTTGCTATGAGCTGATATAAGGGCTTTT i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11330963 426 + 104110932 TAAACAGGCCCCCTCTTACAGCTCTCAGGATGGCAGTGTGGCTGAGGGGACTGGCATTGGACAAGGGACCTGGGTTCAGGTGTCAGGTCTTCTACTTCcttcaagttacttaacctcagAATCTGTTTCCTCGTCTATGAAATGGggaaaatcttttattttggtCATTGGCATTGACAGAAGGCTTAAATGAGGTCATGCTTCTAAGCACATAACAATTGCTCAATAAAAATGTTAGTTGCTAGTATAGATGAGCACTGC-AGAACATGGTA----GTTGATACATGTTGGTTTATAGTGTCCTTTAATTCATATA---GTTACTAAATGGTTTTTAGTTCCTCTATAGCAGTAAATCCTAGCCACTGGGTAGGGAAGACTTATTTCTAACTGAGTATCCTAATTGTTGCTATGAGCTGATATAAGGGCTTTT i papAnu2.chr12 C 0 C 0 s calJac3.chr6 87915377 428 - 158406734 TAAACAGGACCCCTCTTACAGCTCTCAGAATgacagtgtggctgaggggactggcattggacaagggacctgggttcaggtgtcaggttttctgcttccttcaagttacttaacctcagagtctgtttcctcatctatgaaatggggaAAGTCTTTTATCATGGTCATTGGCATTGACAGAAGGCTTAAATGAGGTTCTGCTTCTAAGCACATAACAATTGCTCAATAAAAATGCTCGCTGCTTGTATAGATAAACACTGT-AGAACATGGTA----GTTGATAAAGGTTGGTTTACAGTGTCCTTTAATTCACATAGTTGTTACCAAATGGTTTTTAGTCCCACTATAGCAATAAAGCCTAGCCACTGAGTGGGGAAGGCCCATGTCTAACTGAGTATCCTGCTTGTTGCTATGAGCTGACATAGGGCTTTT- i calJac3.chr6 C 0 C 0 s canFam3.chr19 50670909 403 + 53741614 CCAACAGGGCCCCT-TCCCAGTTACCCGGCCACC--------------GGCCTGCTCTGGGTGGGAGACCTGGG-TCGGGGGTTGGGTCTCCTACT--CTTCGAGTTACTCACCCTCAGAGTCGCCTCCTGTGTCTGCGAAATGGGGAGAATCCTTTCCCCGGGTCATTGGTTTTGAAAGGAAGACTAACTGAGGTCCGGCTT---GGCAGATCACAGATGCTCCATCAAAACGTCC-CTGCT-GTGTAGAGCGGCGCTACTCGCACACAGTAGGTGGTTGGCGAATGTTGGCTTCTGGTTTCCTTTCACTC--CTAGTTG--GCAAAATAGTTTCTAGTCCCTTTCTAGTCCCGCATTCTAACCACTGAGCGGGGAAGGCCCAT----GACTAAGCATCCTATGTGATGCTATGACCAGATATAAGGTGTTTT i canFam3.chr19 C 0 C 0 e ponAbe2.chr2b 38406131 131 + 135000294 M e mm10.chr2 49760717 3269 + 182113224 I e chlSab2.chr10 34431267 386 + 128595539 I a score=30891.000000 s hg38.chr2_GL582966v2_alt 86905 11 + 96131 AAAGATAATAT s panTro4.chr2B 153199710 11 + 247518478 AAAGATAATAT i panTro4.chr2B C 0 C 0 s nomLeu3.chr20 82359122 9 - 85365473 --AGATAATAT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11970971 11 + 106825570 AAAGATAATAT i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37674213 11 + 132586672 AAAGATAATAT i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11331389 11 + 104110932 AAAGataatat i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34431653 11 + 128595539 AAAGATAATAT i chlSab2.chr10 I 386 C 0 s calJac3.chr6 87915805 11 - 158406734 AAAGACAGTAT i calJac3.chr6 C 0 C 0 s canFam3.chr19 50671312 11 + 53741614 AAAGATATTAT i canFam3.chr19 C 0 I 101 e ponAbe2.chr2b 38406131 131 + 135000294 M e mm10.chr2 49760717 3269 + 182113224 I a score=276772.000000 s hg38.chr2_GL582966v2_alt 86916 117 + 96131 Tggccgggcatggcgggtcatgcctgtaatcccagcactttgggaagctgaggtgggcagatcactttaggtcaggagttcaagaccagcctggccaacatggtgaaacatccttcc s panTro4.chr2B 153199721 117 + 247518478 Tggccgggcatggtgggtcatgcctgtaatcccagcactttgggaagctgaggtgggcagatcactttaggtcaggagttcaagaccagcctggccaacatggtgaaacatccttcc i panTro4.chr2B C 0 C 0 s nomLeu3.chr20 82359131 116 - 85365473 Tggctgggcatggtggatcacgcctgtaatcccagcactttgggaagctgaggtgggcagatcacttgaggtcaggagttcaagaccagcctggccaacatggtgaaac-cccttcc i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11970982 116 + 106825570 Tggctgggcatggtggatcatgcctgtaatcccagcactttgggaagctgaggtgggcagatcacttgaggtcaggagttcaagaccagtctggccaacatggtgaaac-cccttcc i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37674224 116 + 132586672 Tggctgggcatggtggatcatgcctgtaatcccagcactttgggaagctgaggtgggcagatcacttgaggtcaggagttcaagaccagtctggccaacatggtgaaac-cccttcc i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11331400 116 + 104110932 tggctgggcatggtggatcatgcctgtaatcccaacactttgggaagctgaggtgggcagatcacttgaggtcaggagttcaagaccagtctggccaacatggtgaaac-cccttcc i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34431664 116 + 128595539 Tggctgggcatggtggatcatgcctgtaatctcagcactttgggaagctgaggtgagcagatcacttgaggtcaggagttcaagaccagcctgaccaacatggtgaaac-cccttcc i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87915816 116 - 158406734 Tggccaggcagagtggctcacacctgtaatcccagcacttcgggaagctgaggcaggtggatcacttgagctcaggagttcaagaccagcctgaccaacacagtaaaac-cccttcc i calJac3.chr6 C 0 C 0 e canFam3.chr19 50671323 101 + 53741614 I e ponAbe2.chr2b 38406131 131 + 135000294 M e mm10.chr2 49760717 3269 + 182113224 I a score=159918.000000 s hg38.chr2_GL582966v2_alt 87033 54 + 96131 ctactaaaaatagaaaaattagctgggcgtagacatgcacacctgtaaccctag s panTro4.chr2B 153199838 54 + 247518478 ctattaaaaatagaaaaattagctgggcgtagacatgcacacctgtaaccctag i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38406262 54 + 135000294 ctactaaaaatagaaaaattagctgggtgtggacatacacacctgtaaccctag i ponAbe2.chr2b M 131 C 0 s nomLeu3.chr20 82359247 54 - 85365473 ctactaaaaatagaaaaattagctgggcgtgtacatgcacacctgtaactctag i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11971098 54 + 106825570 ctactaaaaatagaaaaattagcttggcgtgtacatgcacacctgtaaccctag i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37674340 54 + 132586672 atactaaaaatagaaaaattagcttggcgtgtacatgcacacctgtaaccctag i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11331516 54 + 104110932 ctactaaaaatagaaaaattagcttggcgtgtacatgcacacctgtaaccctag i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34431780 54 + 128595539 ctactaaaaatagaaaaattagctgggcgtgtacatgcacacctgtaactctag i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87915932 54 - 158406734 ctactaaaaatagaaaaattagctgggtgggtaggtacacgcctataaccctag i calJac3.chr6 C 0 C 0 e canFam3.chr19 50671323 101 + 53741614 I e mm10.chr2 49760717 3269 + 182113224 I a score=202272.000000 s hg38.chr2_GL582966v2_alt 87087 65 + 96131 ctacttgggagg-ttgaagtggagaattgcttgaacccaggaggcagaggt--tgcagtgagccgaga s panTro4.chr2B 153199892 65 + 247518478 ctacttgggagg-ttgaagtggagaatcgcttgaacccaggaggcagaggt--tgcagtgagccgaga i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38406316 65 + 135000294 ctacttgggagg-ttgaagtggagaatcgcttgaacccaggaggcagaggt--tgcagtgagccgaga i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82359301 65 - 85365473 ctacttgggagg-ttgaagtggagaatcacttgaacccaggaggtggaggg--tgcagtgagccaaga i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11971152 65 + 106825570 ctatctgggaga-ttgaagtggagaatcgctcgaacccaggaggtggaggt--tgcagtgagccaaga i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37674394 65 + 132586672 ctatctgggaga-ttgaagtggagaatcgctcgaacccaggaggtggaggt--taaagtgagccaaga i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11331570 65 + 104110932 ctattTGGGAGA-TTGAAgtggagaatcgctcgaacccaggaggtggaggt--tgcagtgagccgaga i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34431834 65 + 128595539 ctatttgggagg-ttgaagtggagaatcgcttgaacccaggaggtggaggt--tgcagtgagccgaga i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87915986 65 - 158406734 ctacttgggagg-ctaagctggagaattgcttgaacccaggaggtggaggt--tgcagtgagctgcga i calJac3.chr6 C 0 C 0 s canFam3.chr19 50671424 63 + 53741614 ccatgtgggaagcccgacgtggg-----actcgatcccaggaccctggggtcatgccctgggccgaag i canFam3.chr19 I 101 I 63 e mm10.chr2 49760717 3269 + 182113224 I a score=206042.000000 s hg38.chr2_GL582966v2_alt 87152 84 + 96131 ttgtgccactgcactccagcctaggtgacaaagtgagagcctatctaaaa--------------aaCATATATATAT----------------AATTTACTTATCTACAAGCTA s panTro4.chr2B 153199957 84 + 247518478 ttgtgccactgcactccagcctaggtgacaaagtgagagcctatctaaaa--------------aaCATATATATAT----------------AATTTACTTATCTACAAGCTA i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38406381 84 + 135000294 ttgtgccactgcactccagcctaggtgacaaagtgaaagcctatctaaaa--------------aaCATATATATAT----------------AATTTACTTATCTACAAGCTA i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82359366 100 - 85365473 ttgtgccactgcactccagcctaggtgacagagtgagaGCCTATCTAAAa--------------tatatatatatatatatatatatatataAAATTTGCTTATCTACAGGCTA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11971217 114 + 106825570 tcatgccactgcactccagcctaggtgacagagtgagaGCCTATCTTATTtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtATAAAATTTACTTATCTACAAGCTA i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37674459 100 + 132586672 tcatgccactgcactccagcctaggtgacagagtgagaGCCTATCTTATT--------------tgtgtgtgtgtgtgtgtgtgtATATATAAAATTTACTTATCTACAAGCTA i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11331635 112 + 104110932 tcatgccactgcactccagcctaggtgacagagtgagagcctatcttatt--tttgtgtgtgtgtgtgtgtgtgtgtgtgtatgtatatataaaatttacttaTCTACAAGCTA i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34431899 114 + 128595539 tcatgccactgcactccagcctaggtgacagagtgagaGCCTATCTTATTTTTATGTGTGTGTGTGtatgtatatatatatatatatatataAAATTTACTTATCTACAAGCTA i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87916051 95 - 158406734 ttgcgccactgcactccaacctgggtgacaaagtgagaGCCTATCAAGCC--------------TGTCT-CAAATATATCTATATATATATACAGT----TTATCTACAAGCTA i calJac3.chr6 C 0 C 0 e canFam3.chr19 50671487 63 + 53741614 I e mm10.chr2 49760717 3269 + 182113224 I a score=1892638.000000 s hg38.chr2_GL582966v2_alt 87236 562 + 96131 TGACTATTTTTAAG-AAATGACTGGGCATTTGTCAGTGGAGATTAAAAAG---GGGTAGTAATCAACAGATTCAGGAATTGCAATTGAAAAGTAAAGAAATGCTAAATCC-TTTTTGAAAAGTAATTGAAAATATGGAATTCATTGCTTAGATGAGAGCAAAGCCTTTTTGAGACAGTCTTTCCTGACCTTTGGGATTTTCATTCTGAAGTATCTCTTCCC-TGGGTAGAAATGATCTCAATTGTGTCTTCCCAGCCCTCCTG-TGGAGTCAAAGCA-CATATTCTTA---------CAGCTGGATATCTTTGGAATTTCCTTCTGCTTCATTTCAGGGTTCAAGAATTATAGCCATAATGAGTATTTTGGTTTATTCTCAAGGTTTCAGAGCCTATGAAGATGCCAATATACAAAAATCAAAAGAACCCAGGATAATGCTGGCTTTGATCTTATCTGGTTCAAATCCACAGGGGGCTGCCTCAGG---AGGAGATGATCTTTTTCAAACCCCAGAGCTACATATGGGGCAGTGCAGTGCaacca------------------------------------------------------tgtgacattgggcaagttacttgatttctgtcagctt s panTro4.chr2B 153200041 563 + 247518478 TGACTATTTTTAAG-AAATGACTGGGCATTTGTCAGTGGAGATTAAAAAG---GGGTAGTAATCAACAGATTCAGGAATTGCAATTGAAAAGTAAAGAAATGCTAAATCCTTTTTTGAAAAGTAATTGAAAATATGGAATTCATTGCTTAGATGAGAGCAAAGCCTTTTTGAGACAGTCTTTCCTGACCTTTGGGATTTTCATTCTGAAGTATCTCTTCCC-TGGGTAGAAATGATCTCAATTGCGTCTTCCCAGCCCTCCTG-TGGAGTCAAAGCA-CATATTCTTA---------CAGCTGGATATCTTTGGAATTTCCTTCTGCTTCATTTCAGGGTTCAAGAATTATAGCCATAATGAGTATTTTGGTTTATTCTCAAGGTTTCAGAGCCTATGAAGATGCCAATATACAAAAATCAAAAGAACCCAGGATAATGCTGGCTTTGATCTTATCTGGTTCAAATCCACAGGGGGCTGCCTCAGG---AGGAGATGATCTTTTTCAAACCCCAGAGCTACATATGGGGCAGTGCAGTGCaacca------------------------------------------------------tgtgacattgggcaagttacttgatttctgtcagctt i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38406465 563 + 135000294 TGACTATTTTTAAG-AAATGACTGGGCATTTGTCAGTGGAGATTAAAAAG---GGGTAGTAATCAACAGATTCAGGAATTGCAATTGAAAAGTAAAGAAATGCTCAATCCTTTTTTGAAAAGTAATCGAAAATATGGAATTCATTGCTTAGATGAGAGCAAAGCCTTTTTGAGACGGTATTTCCTGACCTTTGGGATTTTCATTCTGAAGTGTCTCTTCCC-TGGGTAGAAATGATCTCAATTGCGTCTTCCCAGCTCTCCTG-TGGAGTCAAAGCA-CATATTCTTA---------CAGCTGGATATCTTTGGAATTTCCTTCTGCTTCATTTCAGGGTTCAAGAATTATAGCCATAATGAGTATTTTCGTTTATTCTCAAGGTTTCAGAGCCTATGAAGATGCCAATATACAAAAATCAAAAGAACCCAGGATAATGCTGGCTTTGATCTTATCTGGTTCAAATCCACAGGGGGCTGCCTCAGG---AGAAGATGATCTTTTTCAAACCCCAGAGCTACATATGGGGCAGTGCAGTGCaacca------------------------------------------------------tgtgacattgggcaagttacttgatttctgtcagctt i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82359466 560 - 85365473 TGAGTATTTTTAAG-AAATGACTGGGCATTTGTCAGTGGAGATTAAAAAG---GGGTAGTAATCAACAGATTCAGGAATTGCAATTGAAAAGTAAAAAAATGCTAAATCCTTTTTTGAAAAACAATTGGAAATATGGAATTCATTGCTTAGATGAGAACAAAGCCTTTTTGAGACAGTCTTTCCTGACCTTTGGGATTTTCATTCTGAAGTGTCTCTTCCC-TGGGTAGAAACGATCTCAATTGCA---CCCCAGCCCTCCTG-TGGAGTCAAAGCA-CATATTCTTA---------CAGCTGGATATCTTTGGAATTTCCTTCTGCTTCATTTCAGGGTTCAAGAATTATAGCCATAATGAGTATTTTGGTTTATCCTCAAGGTTTCAGAGCCAATGAAGATGCCAGTGTACAAAAATCAAAAGAACCCAGGATAATGCTGGCTTTGATCTTATCTGGTTCAAATCCACAGGGGGCTGTCTCAGG---AGGAGATGATCTTTTTCAAACCCCAGAGCTACATATGGGGCAGTGCAGTGCAACGA------------------------------------------------------tgtgacattgggcaagttacttgatttctgtcagctt i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11971331 563 + 106825570 TGACTATTTTTAAG-AAATGACTGGGCATTTGTCAGTGGAGATTAAAAAG---GGGTAGTAATCAACAGATTCAGGAATTGCAAATGAAAAGTAAAGAAATGCTAAATCATTTTTTGAAAAACAATTGGAAATATGGAATTCATTGCTTAGATGAGAGCAAAGCCTTTTTGAGACAGTCTTTCCTGACCTTTGGGATTTTCATTCTGAAGTGTCTCTTCCC-TGGGTAGAAattatctcaattgtgtcttcccagccctcctg-tggagtcagagca-catattctta---------CAGCTGGATATCTTTGGAATTTCCTTCTGCTTCATTTCAGGGTTCAAGAATTATAGCCATAATGAGTATTTTGGTTTATCCTCAAGGTTTCAAAGCCAACGAAGATGCCAATGTACAAAAATCAAAAGAACCCAGGATAATGCTGGCTTTGATCTTATCTGGTTCAGATCCACAGGGGGCTGCCACAGG---AGGAGATGATCTTTTTCAAACGCTAGAGCTACCTATGGGGCAGTGGAGTGCaacca------------------------------------------------------tgtgacatcgggcaggttgcttgatttctgtcagctt i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37674559 563 + 132586672 TGACTATTTTTAAG-AAATGACTGGGCATTTGTCAGTGGAGATTAAAAAG---GGGTAGTAATCAACAGATTCAGGAATTGCAAATGAAAAGTAAAGAAATGCTAAATCATTTTTTGAAAAATAATTGGAAATATGGAATTCATTGCTTAGATGAGAGCAAAGCCTTTTTGAGACAGTCTTTCCTGACCTTTGGGATTTTCATTCTGAAGTGTCTCTTCCC-TGGGTAGAAATTATCTCAATTGTGTCTTCCCAGCCCTCCTG-TGGAGTCAGAGAA-CATATTCTTA---------CAGCTGGATATCTTTGGAATTTCCTTCTGCTTCATTTCAGGGTTCAAGAATTATAGCCATAATGAGTATTTTGGTTTATCCTCAAGGTTTCAAAGCCAACGAAGATGCCAATGTACAAAAATCAAAAGAACCCAGGATAATGCTGGCTTTGATCTTATCTGGTTCAGATCCACAGGGGGCTGCCACAGG---AGGAGATGATCTTTTTCAAACGTTAGAGCTACCTATGGGGCAGTGGAGTGCaacca------------------------------------------------------tgtgacatcgggcaggttgcttgatttctgtcagctt i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11331747 559 + 104110932 Tgactatttttaag-aaatgactGGGCATTTGTCAGTGGAGATTAAAAAG---GGGTAGTAATCAACAGATTCAGGAATTGcaaatgaaaagtaaagaaatgctaaatcattttttgaaaaataattggaaatatgGAATTCACTGCTTAGATGAGAGCAAAgcctttttgagacagtctttcctGACCTTTGGGATTTTCATTCTGAAGTGTCTCTTCCC-TGGGTAGAAATTATCTCAATTGTGTCTTCCCAGCCCTCCTG-TGGAGTCAGAGCA-CATATTCTTA---------CAGCTGGATATCTTTGGAATTTCCTTCTGCTTCATTTCAGGGTTCAAGAATTATAGCCATAATGAGTATTTCGGTTTATCCTCAAGGTTTCAAAGCCAATGCAGATgccaatgtacaaaaatcaaaagaaccCAGGAGAATGCTGGCTTTGATCTTATCTGGTTCAGATCCACAGGGGGCTGCCTC------AGGAGATGATCTTTTTCAAACGCTAGAGCTACCTATGGGGCAGTGGAGTGCAACCA------------------------------------------------------TGTGACATC-GGCAGGTTGCTTGATTTCTGTCAGCTT i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34432013 563 + 128595539 TGACTATTTTTAAG-AAATGACTGGGCATTTGTCAGTGGAGATTAAAAAG---GGGTAGTAATCAACAGATTCAGGAATTGCAAATGAAAAGTAAAGAAATGCTAAATCATTTTTTGAAAAATAATTGGAAATATGGAATTCATTGCTTAGATGACAGCAAAGCCTTTTTGAGACAGTCTTTCCTGACCTTTGGGATTTTCATTCTGAAGTGTCTCTTCCC-TGGGTGGAAATTATCTCAATTGTGTCTTCCCAGCCCTCCTG-TGGAGTCAGAGCA-CATACTCTTA---------CAGCTGGATATCTTTGGAATTTCCTTCTGCTTCATTTCAGGGTTCAAGAATTATAGCCATAATGAGTATTTTGGTTTATCCTCAAGGTTTCAAAGCCAATGAAGATGCCAATGTACAAAAATCAAAAGAACCCAGGATAATGCTGGCTTTGATCTTATCTGGTTCAGATCCACAGGGGGCTGCCTCAGG---AGGAGATGATCTTTTTCAAATGCTAGAGCTACCTATGGGGCAGTGGAGTGCaacca------------------------------------------------------tgtgacatcgggcacgttgcttgatttctgtcagctt i chlSab2.chr10 C 0 I 155 s calJac3.chr6 87916146 561 - 158406734 CAACTATTTTAAAG-AAATGACTGGGCATT----AGTGAAGATTAAAAAT---AGGTAGTAATCCACAGATTCAGGAATTACAATTGAAAGGTAAAGAAATATTAAATCA-TTTTTGAAAATTGATTGGAACTGCAGAACTCATTGCTTAGATGAGATCAAAGCCTTTTTGAGACAGCCTTTCCTGGCCTTTGGAATTTT-GTTCTGAAGTTTCTCTTCCCTTAGGTGGAAATGATCTTAGCTGACTCTTCCCAGTCCTCCTGTTAGAGTCAGAGCA-CATATTCCTA---------CAGCTGGATATCTTTGGAATTTCCTTATGCTTCATTTCAGGGTTCAAGAATTATAGCCATAATAAGTATTTTGGTTTAGCCTCAAGATTTCAGAGCCACTGAAGGTGCCAATGTACAAAAATCAAAAGAACCCAGGATAATGCTGGCTTTGATCTTATCCAGTTCAAATCCACA-GGGGCTGCCTCAGGAGAAGGAGATCATCTTTTTCAAACCTCAGACCTACATATGGGTCAGTGTAGTGCaacca------------------------------------------------------tgtgacattgggcaagttgcttgatttctttcagctt i calJac3.chr6 C 0 C 0 s canFam3.chr19 50671550 620 + 53741614 TGACTATTTTAAAGAAAAAGACCGGACATTTGTTTGGGGAGGTTAAAAAAAATGGATAGTAGCCAATGAAGTGGGAGATTGTGGTTGGAA-GTGAGAAAATGCAAAATCA--TTTAAAAAAACCATTGAAAATGTGG-ATTCGTTGCTTAGTTGGGGTCAAC-CCCTTTTGAGATGATCCTTGTTGATCTTCGGGATGCTTGTTCTGAAGTGTCCGT--CC-TGGGCAGGAATGATCTCAGCTGCCCCTTCCCAGCCCTCTTGTTGAAGCCAGAGCAGCATATTCATACCTGGGCAGCACCTGGATGTCTTTGGGGTTGCTTTCCGCTTTGTTTTAGGTCTCAAGGACTCGAGTCACAATGAGTATTTTGGTTCATGCTCAAT-TTTCACAGTGACTGAAGGTGCTAACATGTGGAAATC---AGAACTCCGGAAACCGCGGGCTTCTAGCTCAGCCAGTTCAAATCC-CGGGGGGCTGCCACGGGG--AGGGGAGCATCTTTTTCAAACCACAGAGCCGgacgcggagccgtgcagcgcagcaaagtacggacgtgggatagggaagtgggttccaggcccagcttggcttactgctgtgtgacgttgggcacgtcgctggatttct-tcaaccc i canFam3.chr19 I 63 C 0 e mm10.chr2 49760717 3269 + 182113224 I a score=10281.000000 s hg38.chr2_GL582966v2_alt 87798 10 + 96131 tag-gtttcct s panTro4.chr2B 153200604 11 + 247518478 tagtttttcct i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38407028 11 + 135000294 tagtttTTCCT i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82360026 11 - 85365473 tagtctttctt i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11971894 10 + 106825570 cagtttttct- i rheMac3.chr12 C 0 I 1 s macFas5.chr12 37675122 10 + 132586672 cagtttttct- i macFas5.chr12 C 0 I 1 s papAnu2.chr12 11332306 10 + 104110932 CAGTTTTTCT- i papAnu2.chr12 C 0 I 1 s calJac3.chr6 87916707 10 - 158406734 cagtttttct- i calJac3.chr6 C 0 I 1 s canFam3.chr19 50672170 10 + 53741614 cagtttcgtc- i canFam3.chr19 C 0 C 0 e mm10.chr2 49760717 3269 + 182113224 I e chlSab2.chr10 34432576 155 + 128595539 I a score=815979.000000 s hg38.chr2_GL582966v2_alt 87808 254 + 96131 accggctaagtgggATCAGGCATTGAGAGCCTAGCTCTGTACTTGGTTTCACAGTGAATCAGAC-AAGAAGGCTGTGTTCTT--GTCCAGTGATATGCTTGTTAGGGGAAGATGGACAGAAAAT----AAGGTAACTTCAAGTAGTGGTAAGTGCTCAGAAGAAAACAAAA-ACAGGCTAATGGAATAGGAACACTGT----TTTAGAAgagggggtgacatttaagttgagaactgagtgatgaaaaatgccaggcACACAGCAA s panTro4.chr2B 153200615 254 + 247518478 accggctaagtgggATCAGGCATCGAGAGCCTAGCTCTGTACTTGGTTTCACAGTGAATCAGAC-AAGAAGGCTGTGTTCTT--GTCCAGTGATATGCTTGTTAGGGGAAGATGGACAGAAAAT----AAGGTAACTTCAAGTAGTGGTAAGTGCTCAGAAGAAAACAAAA-ACAGGCTAATGGAATAGGAACACTGT----TTTAGAAgagggggtgacatttaagttgagaactgagtgatgaaaaatgccaggcACACAGCAA i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38407039 259 + 135000294 ACTGGCTAAGTGGGATCAGGCATCAAGAGCCTAGCTCTGTACTTGGTTTCAcagtgaatcagac-aagaaggctgtgttctt--gtccagttttaagattggtaggggaagatggacagaaaataaacaaggtaaattcaagtagtggtaagtgctcagaagaaaacaaaaggcaggctaatggaataggaacactgt----tttagaagagggggtgGCATTTAAGTTGAGAACTGAGTGATGAAAAATGCCAGGCACACAGCAA i ponAbe2.chr2b C 0 I 1699 s nomLeu3.chr20 82360037 258 - 85365473 actggctaagtgggATCAGGCATCGAGAGCCTAGCTCTGTACTTGGTTTCAcagtgaatcagac-aagaaggctgtgttctt--gtgcagtgatatgcttgttaggggaagacggacagaaaagaaacaaggtaacttcaagtagtggtaagtgctcagaagaaaacaaaa-acaggctaatggaatagaaacactgt----tttagaagagggggtgACATTTAAGTTGAGAACTGAGTGATAAAAAATGCCAGGCACACAGCAA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11971905 256 + 106825570 accagccaagggggTTCAGGCATCGAGAGCCTAGCTCTGGACTTGGTTTCAcagtgaatgagac-aagaaggctctcttctt--gtgcagtgatatgcttgttaggggaaaatggacagaaaataaacaaggtaacttcaagtagtggtaagtgct-agaagaaaacagaa-acaggctaatggaataggaacactgt----tttagaagagggggtgacatttAAGTTGA-GACTGAGTGATGAAAAATGCCAGGCACACAGCAA i rheMac3.chr12 I 1 C 0 s macFas5.chr12 37675133 256 + 132586672 accAGCCAAGGGGGTTCAGGCATCGAGAGCCTAGCTCTGGACTTGGTTTCAcagtgaatgagac-aagaaggctctcttctt--gtgcagtgatatgcttgttaggggaagatggacagaaaataaacaaggtaacttcaagtagtggtaagtgct-agaagaaaacagaa-acaggctaatggaataggaacactgt----tttagaagagggggtgACATTTAAGTTGA-GACTGAGTGATGAAAAATGCCAGGCACACAGCAA i macFas5.chr12 I 1 C 0 s papAnu2.chr12 11332317 256 + 104110932 ACCAGCCAAGGGGGTTCAGGCATCGAGAGCCTAGCTCTGTACTTGGTTTCACA--GAATGAGAC-AAGAAGGCTCTATTCTT--GTGCAGTGATATGCTTGTTAGGGGAAGatggacagaaaataaacaaggtaACTTCAAGTAGTGGTAagtgctcagaagaaaacagaa-acaggctAATGGAATAGGAACACTGT----TTTAGAAGAGGGGGTGACATTTAAGTTGAGGACTGAGTGATGAAAAATGCCAGGCACACAGCAA i papAnu2.chr12 I 1 C 0 s chlSab2.chr10 34432731 255 + 128595539 ACCAGCCAAGGGGGTTCAGGCATCAAGAGCCTAGCTCTGTACTTGGTTTCaca--gaatgagac-aagaaggctctattctt--gtgcagtgatatgcttgttaggggaagatggacagaaaataaacaaggtaacttcaagtagtggtaagtgctcagaagaaaacagaa-acaggctaatggaataggaacactgt----tttagaagagggggtgACATTTAAGTTGA-GACTGAGTGATGACAAATGCCAGGCACACAGCAA i chlSab2.chr10 I 155 C 0 s calJac3.chr6 87916718 258 - 158406734 acctgccaagtgggATCTGGCATCGAGGGCCTGGCTCTGTACTTGGTTTCAcagtgaatgagac-aagaaggctctgttctt--gtgcagtgatatgctcgttaggggaagacagacagaaagtaaacaaggtaacttcacatagtggtaagtgctcagaagaacacaaaa-acaggctaacagagtaggaccgctat----tttagaagagggcgtgacatttACTTTGAGAACTGAGTGATGAAAAATGCCAGGCACACAGAAA i calJac3.chr6 I 1 C 0 s canFam3.chr19 50672180 255 + 53741614 gtctgcaaaatggggTCAGGCATGGGGAGGCT-GCTCTGTA--TCATTTAACACCAGATGAGGCGAAGAAGGCTCTGTTCTTACGGGTGGTCGTCGTCTTGT--GGGGAAGAAGGACCACAAATAAGCAAGGGAACTTCAGCTAGTGGT--GTGCTTCTGAAAAAACA----GCAGGTGAATGAGATGGAGACGGGACAACATTTAGAAGGGGGGGTGGCATCCGAGCTGAGCACTGGGTGGTGACGAGTACCAGCGGCGCAGTGA i canFam3.chr19 C 0 C 0 e mm10.chr2 49760717 3269 + 182113224 I a score=158913.000000 s hg38.chr2_GL582966v2_alt 88062 62 + 96131 CCTGGGAGAAAGTGGTTC-GATGATCACTCAAAGGTAGGAATGAATGAGGGT-TATTTGAGGAA s panTro4.chr2B 153200869 62 + 247518478 CCTGGGAGAAAGTGGTTC-GATGATCACTCAAAGGTAGGAATGAATGAGGGT-TATTTGAGGAA i panTro4.chr2B C 0 C 0 s nomLeu3.chr20 82360295 62 - 85365473 CCTGGGAGAGAGTGGTTC-GATGATCACTCAAAGGTAGGAATGAATGAGGGT-TATTTGAGGAA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11972161 62 + 106825570 CCTGGGAGAGAGTGGTTT-GATGATCACTCAAAGGTAGGAATGAATGAGGGT-TATTCGAGGAA i rheMac3.chr12 C 0 I 7 s macFas5.chr12 37675389 62 + 132586672 CCTGGGAAAGAGTGGTTT-GATGATCACTCAAAGGTAGGAATGAATGAGGGT-TATTCGAGGAA i macFas5.chr12 C 0 I 7 s papAnu2.chr12 11332573 62 + 104110932 CCTGGGAGAGAGTGGTTT-GATGATCACTCAAAGGTAGGAATGAATGAGGGT-TTTTCGAGGAA i papAnu2.chr12 C 0 I 7 s chlSab2.chr10 34432986 62 + 128595539 CCTGGGAGAGAGTGGTTT-GATGATCACTCAAAGGTAGGAATGAATGAGGGT-CATTCGAGGAA i chlSab2.chr10 C 0 I 207 s calJac3.chr6 87916976 62 - 158406734 CTTGGGAGAGAGTGGTTC-GATGCTCACTCAAGGGGAGGAATGAATGAGCGT-TATCTGAGGAA i calJac3.chr6 C 0 C 0 s canFam3.chr19 50672435 60 + 53741614 -CTGGGGAAGAGTGGCACGGACGCTGGCTGGAAGGTGCGGATG---GCGGGCGTATTTGGGGGA i canFam3.chr19 C 0 C 0 e ponAbe2.chr2b 38407298 1699 + 135000294 I e mm10.chr2 49760717 3269 + 182113224 I a score=-470.000000 s hg38.chr2_GL582966v2_alt 88124 2 + 96131 -TG s panTro4.chr2B 153200931 2 + 247518478 -TG i panTro4.chr2B C 0 C 0 s nomLeu3.chr20 82360357 2 - 85365473 -TG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11972230 2 + 106825570 -CG i rheMac3.chr12 I 7 C 0 s macFas5.chr12 37675458 2 + 132586672 -CG i macFas5.chr12 I 7 C 0 s papAnu2.chr12 11332642 2 + 104110932 -CG i papAnu2.chr12 I 7 C 0 s calJac3.chr6 87917038 2 - 158406734 -TG i calJac3.chr6 C 0 C 0 s canFam3.chr19 50672495 2 + 53741614 TC- i canFam3.chr19 C 0 C 0 e ponAbe2.chr2b 38407298 1699 + 135000294 I e mm10.chr2 49760717 3269 + 182113224 I e chlSab2.chr10 34433048 207 + 128595539 I a score=60899.000000 s hg38.chr2_GL582966v2_alt 88126 23 + 96131 TTACCAAGGCTGATAAGGCAGTA s panTro4.chr2B 153200933 23 + 247518478 TTACCAAGGCTGATAAGGCAGTA i panTro4.chr2B C 0 C 0 s nomLeu3.chr20 82360359 23 - 85365473 TTAGCAAGGCTGATAAGGCGGTA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11972232 23 + 106825570 TTAGCAAGGCTGATAAGGCGGTA i rheMac3.chr12 C 0 I 44 s macFas5.chr12 37675460 23 + 132586672 TTAGCAAGGCTGATAAGGCGGTA i macFas5.chr12 C 0 I 4 s papAnu2.chr12 11332644 23 + 104110932 TTAGCAAGGCTGATAAGGCGGTA i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34433255 23 + 128595539 TTAGCAAGGCTGATAAGGCGGTA i chlSab2.chr10 I 207 I 25 s calJac3.chr6 87917040 23 - 158406734 TTAGCTAGGCTGATAAGGTGGTA i calJac3.chr6 C 0 C 0 s canFam3.chr19 50672497 23 + 53741614 ATAGGAGGGCTGATCGGGCCGGA i canFam3.chr19 C 0 C 0 e ponAbe2.chr2b 38407298 1699 + 135000294 I e mm10.chr2 49760717 3269 + 182113224 I a score=3396.000000 s hg38.chr2_GL582966v2_alt 88149 7 + 96131 GCTCATG s panTro4.chr2B 153200956 7 + 247518478 GCTCATG i panTro4.chr2B C 0 C 0 s nomLeu3.chr20 82360382 6 - 85365473 GCTCAT- i nomLeu3.chr20 C 0 C 0 s macFas5.chr12 37675487 7 + 132586672 GCTGATA i macFas5.chr12 I 4 I 14 s papAnu2.chr12 11332667 6 + 104110932 GCTCCT- i papAnu2.chr12 C 0 C 0 s calJac3.chr6 87917063 7 - 158406734 GCTCATG i calJac3.chr6 C 0 C 0 s canFam3.chr19 50672520 7 + 53741614 GCCCAGA i canFam3.chr19 C 0 C 0 e ponAbe2.chr2b 38407298 1699 + 135000294 I e mm10.chr2 49760717 3269 + 182113224 I e chlSab2.chr10 34433278 25 + 128595539 I e rheMac3.chr12 11972255 44 + 106825570 I a score=572138.000000 s hg38.chr2_GL582966v2_alt 88156 226 + 96131 GATCTGGGAGAACCCATCTTCATTAGAGTGGATGGGGAGGGAGTTGAGCCCAAGTAAATGAAGGTGTTGAAGctgtgggcaacttagattgtagcctagtgtgaggggccactggggctgtgggcgtggaagcagtgggagctggttcatgattagacaaggccactctgggctggaccctga---agaaggggtaggaatggg------gtaagcactgggggttgcctagggc s panTro4.chr2B 153200963 232 + 247518478 GATCTGGGAGAACCCATCTTCATTAGAGTGGATGGGGAGGGAGTTGAGCCCAAGTAAATGAAGGTGTTGAAGctgtgggcaacttagattgtagcctagtgtgaggggccactggggctgtgggcatgggagcagtgggagctggttcatgattagacaaggccactctgggctggaccctga---agaaggggtaggaatggggcaacagtaagcactgggggttgcctagggc i panTro4.chr2B C 0 C 0 s nomLeu3.chr20 82360388 232 - 85365473 GATCTGGGAGAACCCATCTTCATTAGAGTGGTTGGGGAGGGAGTTGAGCCCAAGTAAATGAAGGTGTTGAGGCTGTGGGCAAGTTAGATTGTAACCTAGTGtgaggggccactggggctgtaggcatgggagcagtgggagctggttcatgattagacaaggccactctgggctggaccctgg---agaaggggtaggaatggggcaacagtaagcactgggggttgcctagggg i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11972299 231 + 106825570 GATCTGGGAGAACCCATCTTCATTAGAGTGGATGGGGAGGGAGTTGGGCCCAAGTAAATGAAGGTGTTGAGACTGGGGGCAAGTTAGATTGTGACCTagtgcgaggggtcaccagggctgtgggcatgggagcagtgggagctggttcatgattagac-aggccactctgggctggaccctgg---agaaggggtaggaatggggcgacagtaagcactgggggttgtctagggg i rheMac3.chr12 I 44 C 0 s macFas5.chr12 37675508 231 + 132586672 GATCTGGGAGAACCCATCTTCATTAGAGTGGATGGGGAGGGAGTTGGGCCCAAGTAAATGAAGGTGTTGAGACTGGGAGCAAGTTAGATTGTGACCTAGTGCGAGGGGTCACCagggctgtgggcatgggagcagtgggagctggttcatgattagac-aggccactctgggctggaccctgg---agaaggggtaggaatggggcgacagtaagcactgggggttgtctagggg i macFas5.chr12 I 14 C 0 s papAnu2.chr12 11332673 231 + 104110932 GATCTGGGAGAACCCATCTTCATTAGAGTGGATGGGGAGGGAGTTGGGCCCAAGTAAATGAAGGTGTTGAGGCTGGGGGCAAGTTAGATTGTGACCTAGTGTGAGGGGTCACCAGGGCTGTGGGCATGGGAGCAGTGGGAGCTGGTTCATGATTAGAC-AGGCCACTCTGGGCTGGACCCTGG---AGAAGGGGTAGGAATGGGGCAACAGTAAGCACTGGGGGTTGTCTAGGGG i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34433303 231 + 128595539 GATCTGGGAGAACCCATCTTCATTAGAGTGGATGGGGAGGGAGTTGGGCCCAAGTAAATGAAGGTGTTGAGGCTGGGGGCAAGTTAGATTGTGACCTAGTGCGAGGGGTCACCagggctgtgggcatgggagcagtgggagctggttcatgattagac-aggccactctgggctggaccctgg---agaaggggtaggaatggggcaacagtaagcactggggattgtctagggg i chlSab2.chr10 I 25 C 0 s calJac3.chr6 87917070 233 - 158406734 -ACCCGGGAGAGCCCATCTTCATTAGAGTAGATGGGGAGGGAGTTGGACCCAAGTAAATGAAGGTGTTGAGGCTGTGGGCAAGTTAGATTGTAACCTAGTGTGAGGGGCCAGTGGGGCCGTGGGCATGGGAGCAGTGGGGCCTGGTTCATAATGAGACAAGGCCACACTCGGCTGGACCCTGGAGAAGAAGGGGTAGAGATGGGGCAACAATAAGAAGTGGGGGTTGCCTAGGG- i calJac3.chr6 C 0 C 0 s canFam3.chr19 50672527 182 + 53741614 GAACAGAG-------ACCTTCATCAGGGCAGTTGGGGAGGGAG-----------------------------------------GAGAGTGCAGTCTGGGCGTGGGGGGCACTGGGGGCTCCGGCCTGGGAGTGGTGGGACCTGGTTCACACTGGGAA-AGGCCACCCTGTGCTGGACCCCCA---TGGAAAGGATGGGGTGGG-TGGGAGTTGGAGCGGGGGCTCCCCTTGAGC i canFam3.chr19 C 0 C 0 e ponAbe2.chr2b 38407298 1699 + 135000294 I e mm10.chr2 49760717 3269 + 182113224 I a score=186.000000 s hg38.chr2_GL582966v2_alt 88382 3 + 96131 gtc s panTro4.chr2B 153201195 3 + 247518478 gtc i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38408997 3 + 135000294 GTC i ponAbe2.chr2b I 1699 C 0 s nomLeu3.chr20 82360620 3 - 85365473 gtc i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11972530 2 + 106825570 -gt i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37675739 2 + 132586672 -gt i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11332904 2 + 104110932 -GT i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34433534 2 + 128595539 -gt i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87917303 3 - 158406734 GTC i calJac3.chr6 C 0 C 0 s canFam3.chr19 50672709 3 + 53741614 CTC i canFam3.chr19 C 0 I 3389 e mm10.chr2 49760717 3269 + 182113224 I a score=1014169.000000 s hg38.chr2_GL582966v2_alt 88385 350 + 96131 actgtaggtg-gccatggg-ggagggtccggtaccagacccaggtggtggcagcaggggagaagtggcctgagtcagtgcctgcttagagctgattcagctgtcaggcttactgatgagg--------------------------------------------g-ttgagagcaagaagaggaggaaggaagggaatcaaggtagttcctagatttttgtgggctctagcagtta----gggaaacattggtccctttttaaccatgccagggaaaatcgggggatgagcaggttttgtgggaaagcttggtttccatcatgttgcttatgtgctgcctctcagacatccagctgagcccaccacgcaagtgggtgtgtggaacaggtggctggatccgt s panTro4.chr2B 153201198 349 + 247518478 actgtaggtg-gccatcgg-ggagggtccggtatgagacccaggtggtggcagcaggggagaagtggcctgagtcagtgcctgcttagagctgattcagctgtcaggcttactgatgagg--------------------------------------------g-ttgagagcaagaagaggaggaaggaagggaatcaaggtagttcctagatttttgtgggctctagcaatta----gggaaaca-tggtccctttttaaccatgccagggaaaatcgggggatgagcaggttttgtgggaaagcttggtttccatcgtgttgcttatgtgctgcctctcagacatccagctgagcccaccacgcaagtgggtatgtggaacaggcggctggatccgt i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38409000 352 + 135000294 ACTGTAGGTGTGCCATGGATGGAGGGTCCGGTACCAGACCCAGGTCGTTTGAAGCACGGAGAATTGGCCTGAGTCAGTGCCTGCTTCGCTTTAATTCAGCTGTCAGGCTTACTGATGAGG--------------------------------------------G-CTGAGAGCAAGAACAGGAGgaaggaagggaatcacgatagttcctagatttttgtgggccctagcaatta----gggaaacattggtccctttttaaccacgccagggaaaattgggggatgagcaggttttgtgggaaagctcggtttccatcatgttgcttatgtgctgcctctcagacatccagctgagcccaccacccaggtgggtgtgtggaacaggcggctggattcgt i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82360623 350 - 85365473 actgtaggtg-gccatggg-ggagggtccggtaccagacccaggtggtggcagcaggggagaagtggcccgagtcagtgcctgcttagagctgattcagctgtcaggctcactgatgagg--------------------------------------------a-ttgagagcaagaaaaggaggaaggaagggaatcaaggtagttcctagatttttgtgggccctagcaatga----gggaaacattggtccctttttaaccatgccagggaaaatcgggggatgagcaggttttgtgggaaagcttggtttccatcatgttgcttatgtgctgcctctcagtcatccagctgagcccaccacccaggtgggtgtgtggaacaggcggctggatccgt i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11972532 393 + 106825570 accctaggtg-gccatggg-gaggggtccggtaccagacccaggtggtggcagcaggggagaagtggctcgagtcagtgcctgcttagagctgattcagctgtcaggcttactgatgagctgtcaggcttactgatgagcaagaggacgaggaaggaagggaata-ttgagagcaagaggacgaggaaggaagggaatcaaggtagttcctagatttttgtgggccccagcaatta-----ggagacattggtccctttttaaccatgccaggggaaatcgggggatgagcaggttttgtgggaaagcttggtttccatcatgttgcttatgcgctgcctctcagacatccagctgagcccaccacccaagtgggtgtgtggaacaggtggctggatctgt i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37675741 349 + 132586672 accctaggtg-gccatggg-gaggggtccggtaccagacccaggtggtggcagcaggggagaagtggctcgagtcagtgcctgcttagagctgattcagctgtcaggcttactgatgagc--------------------------------------------g-ttgagagcaagaggacgaggaaggaagggaatcaaggtagttcctagatttttgtgggccccagcaatta-----ggagacattggtccctttttaaccatgccaggggaaatcgggggatgagcaggttttgtgggaaagcttggtttccatcatgttgcttatgcgctgcctctcagacatccagctgagcccaccacccaagtgggtgtgtggaacaggtggctggatctgt i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11332906 349 + 104110932 ACCCTAGGTG-GCCATGGG-GGAGGGTCCAGTACCAGACCCGGGTGGTGGCAGCAGGGGAGAAGTGGCTCGAGTTAGTGCCTGCTTAGAGTTGATTCAGCTGTCAGGCTTACTGATGAGC--------------------------------------------A-TTGAGAGCAAGAGGACGAGGAAGGAAGGCAATCAAGGTAGTTCCTAGATTTTTGTGGGCCCCAAAAGTTA-----GGAGACATTGGTCCCTTTTTAACCATGCCAGGGGAAATCGGGGGATGAGCAGGTTTTGTGGGAAAGCTTGGTTTCCATCATGTTGCTTATGCGCTGCCTCTCAGACATCCAGCTGAGCCCACTACCCAAGTGGGTGTGTGGAACAGGTGGCTGGATCCGT i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34433536 349 + 128595539 accctaggtg-gccatggg-ggagggtccggtaccagacccgggtggtggcagcaggggagaagtggctcgagttagtgcctgcttagagctgattcagctatcaggcttactgatgagc--------------------------------------------g-ttgagagcaagaggacgaggaaggaagggaatcaaggtagttcctagatttttgtgggccccagcaatta-----ggagacattggtccctttttaaccatgccaggggaaatcgggggttgagcaggttttgtgggaaagcttcgtttccatcatgttgcttatgtgctgcctctcagacatccagctgagcccaccacccaagtgggtgtgtggaacaggtggctggatccgt i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87917306 354 - 158406734 ACTGTAGGTG-GCCATTGG-GGAGGGTCCAGTACtggactggggtggtggcagcaggagtgaagt-gtccaagtcagtgcctgcttagagctgattcagctgtcaggcttactgatgagg--------------------------------------------gtttgagagcaagaggaggaggaaggaggggaatcaaggtagttcctagatatgggtgggctctagcagttagttagggaaactttggttcctttttaaccatgccaaggaaaatcgggggatgagcaggttttgtgggaaagcttggtttccatcgcattgcttatgcgctgcctctcagatatccagctgagcctgctacccaagtgggtgcgtggaataggtgactggatctct i calJac3.chr6 C 0 C 0 e canFam3.chr19 50672712 3389 + 53741614 I e mm10.chr2 49760717 3269 + 182113224 I a score=2848139.000000 s hg38.chr2_GL582966v2_alt 88735 887 + 96131 gggtctggagcacaggagagaggctgaggtgaggccagggctggagagttgtgacttgtagattgtgtttatggccacaggtctgaaggaggcaacctagagaaaaggtgggcacagcagagaggggagct--gaggggcgagttggacca------ggcccaggcactggaaaatgggaaggccagagaaaagaggtggcaccagcagaggggcctgaggatca-tgtgggggcacagaggtcaagtg-aagaccttgaccctagaaggaaggtggtcagctcagagcttgagtaagatgatgacagagactgggtggttgaagaaggccaggtggcagtgacc-ttagcatggactagacagactaggtgaggaaatagagccggcagctg-------------------------------aacccactttgggggttttatttgaaggagatcagagaaatggagcgatgtggtggtaaggtggggctgcgttgcttttctgttgtaagatgggagatattacagcatagttgtgtgc-gatggtgatggtatagctgagCTGGGCAGAGGAGGAAGCACAGCTGTGGGTGGGCGGTAGATG----GGGTGCATTGGGAGGCAAGATCCAGGTCACC----TTAGAGCTTGTTTTCTCGTGCAGGCAAGAAGC-CAGATGATCAGCTGAGAGAGAGGGA--GGAAGCAGGGTCTCGCTCTTGAGACCAGAGACGGTGTAAAATCAACCTCTCAGGCAGTGCTGAGT-CTTCTTTGCAGCCCCACACTTAATGTAGACACCTGATTAAACATCTGCCCAGCTCCCTCGTTTTGAGAGCCCTGGAGATCCACTTCCTTTCCAGGCAGTGCTTTGGCAAGCCA---GGGGACTTGTTCAAATGTCTCCACCAGATGGCGCCAGTAGGGCATTGCTGAAACCTTA s panTro4.chr2B 153201547 887 + 247518478 gggtctggagcacaggaaagaggcggaggtgaggccagggctggagagttgtgacttgtagattgtgtttatggccacaggtctgaaggaggcaacctagagaaaaggtgggcacggcagagaggggagct--gaggggcgagttggacca------ggcccaggcactggaaaatgggaaggccagagaaaagaggtggcaccagcagaggggcctgaggatca-tgtgggggcacagaggtcaagtg-aagaccttgaccttagaaggaaggtggtcagctcagagcttgagtaagatgatgacagagactgggtggttgaagaaggccaggtggcagtgacc-ttagcatggactagacagactaggtgaggaaatagagccggcagctg-------------------------------aacccactttgggggttttatttgaaggagatcagagaaatggagcgatgtggtggtaaggtggggctgcgttgcttttctgttgtaagatgggagatattacagcatagttgtgtgc-gatggtgatggtatagccgagCTGggcagaggaggaagcacagctgtgggtgggcggtagatg----gggtgcattgggaggcaagatccagttcact----ttagagcttgttttctcatgcaggcaagaagc-cagatgatcagctgagagagaggga--ggaagcagggtctcgctcttgagaccagagacggtgtaaaatcgacctctcaggcagtgCTGAGT-CTTCTTTGCAGCCCCACACTTAATGTAGACACCTGATTAAACATCTGCCCAGCTCCCTGGTTTTGAGAGCCCTGGAGATCCACTTCCTTTCCAGGCAGTGCTTTGGCAAGCCA---GGGGACTTGTTCAAATGTCTCCACCAGATGGCGCCAGTAGGGCATTGCTGAAACCTTA i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38409352 888 + 135000294 gggtctggagcacaggagagaggctgaggtgaggccagggctggagagttgtgacctgtagattgtgtttatggccactggtctgaaggaggcaacctagagaaaaggtgggcacagcagagaggggagct--gaggggcgagttggacca------ggtctaggcactggaaaatgggaaggtcagagaaaggaggtggcaccagcagaggggcctgaggatca-tgtgggggcaccgaggtcaagtg-aagaccttgaccctagaaggaaggtggtcagctcagagcttgagtaagatgacgacagagactgggtggttgaagaaggccagatggcggtgacc-ttagcatggactagacagagcaggtgagggagtagagctggcagctg-------------------------------aacccactttgggggttttatttgaaggagatcagagaaatggagcgatgtggggttaaggtggggctgcgttgcttttctgttgtaagatgggagatattacagcatagctgtgtgt-gatggtgatggtatagctgagCCGggcaaaggaggaagcacagctgcgggtgggcggtagatg----gggtgcattgggaggcaagatccagctcacc----ttagagcttgttttctcatgcaggcaagaagc-cagatgatcagctgagagggaggga--ggaagcagggtctcgctcttgagaccagagacggtgtaaaatcgacctctcaggcagtgCTGAGTCCTTCTTTGTAGCCCCACACTTAATGTAGACACCTGATTAAACATCTGCCTGGCTCCCTGGTTTTGAGAGCCCTGGAGATCCACTTCCTTTCCAGGCAGTGCTTTGGCAAGCCA---GGGGACTTGTTCAAATGTCTCCACCAGATGGCGCCAGTGGGGCATTGCTGAAACCTTA i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82360973 895 - 85365473 cggtctggagcacaggagagaggctgaggtgaggccagggctggagagttgtgacctgtagatagtgtgtatggccatgggtctgaaggaggcaacctagagaaaaggtggagacagcagagaggggagct--gaggggcgagttggacca------ggcccaggcactggaaaatgggaaggtcagagaaaggaggtggcaccagcagaggggcctgaggatcattgtgggggcacagaggtcaagtgaaagaccttgaccctagaaggaaggtggtcagctcagagcttgagtaagatgacgatagagactgggtggttgaagaaggccagatggcggtgacctttagcatggactagacagagcagatgaggaagtagagccggcagctg-------------------------------aatccgctttgggggttttatttgaaggagatcagagaaatggagcgatgtggggttcatgtggggctgcgttgcttttctgttgtaagatgggagatattacagcatagctgtgtgc-gatggtgatggtatagccgagCCGGGCAGAGGAGGAAGCACAGCTGCGGGTGGGCGGTAGATGGGGTGGGTGCATCGGGAGGCAAGATCCAGCTCACC----TTAGAGCTTGTTTTCTCGTGCAGGCAAGAAGC-CAGATGATCAGCTGAGAGGGAGGGA--GGAAGCAGGGTCTTGCTCTTGAGACCAGAGACGGTGTAAAACCGACCTCTCAGGCAGTGCTGAGTCCTTCTTTGCAGCCCCACACTTAATGTACACACCCGATTAAACATCTGCCCAGCTCCCTGGTTTTGAGAGCCCTGGAGATCCACTTCCTTTCCAGGCAGTACTTTGGCAAGCCA---GGGGACTTGTTCAAATGTCTCCACCAGATGGCGCCAGTGGGGCATTGCTGAAACCTTA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11972925 891 + 106825570 gggtctggagcatagcagagaggctggggcgaggccagggctggagacttgtgacctgtagattgtgtttatggccacgggtctgaaggaggcaacctagagaaaaggtgggcccagcagagaggagagct--gaggggtgagttggacca------ggcccaggcactggcaaatgggaaggtcagagaaaggaggtggcaccagccgaggggcctgaggagca-tgtgggggcacagaggtcaagtg-aagaccttgaccctagaaggaaggtggtcagctccgagcttgagtaagatgacaacagagactgggtggttgaagaaggccagatggcggtgacc-ttagcatggactagagagagcagatgaggaaggagagccagcagctg-------------------------------aacccactttgggggttttatttgaaggagatcagagaaatggagcgacgtggagttaaggtggggctgtgttgcttttctgtcatgagatgggagatattatagcatagctgtgtgc-gatggtgatggtatagccgagCCGggcagaggaggaagcacagatgcgggtgggtggtagatg----gggtgcactgggaggcaagatccagctcaccttagttagaacttgttttctcgtgcaggcaagaagc-cagatgattag-tgagaaagaggga--ggaagcagggtctcgctcttgagaccagagatggtgtaaaatcgacctctcaggcagtgCTGAGTCCTTCTTTGCAGCCCCATACTTAATGCAGACACCTGATTAAACGTCTGCCCAGCTCCCTGGTTCTGAGGGCCCTGGAGATCCACTTCCTTTCCAGGCAGTGCTTTGGCAAGCCA---GGGGACTTGTTCAAATGTCTCCACCAGATGGCGCCAGTGGGGCATTGCTGAATCCTCA i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37676090 891 + 132586672 gggtctggagcatagcagagaggctggggcgaggccagggctggagacttgtgacctgtagattgtgtttatggccacgggtctgaaggaggcaacctagagaaaaggtgggcccagcagagaggagagct--gaggggtgagttggacca------ggcccaggcactggcaaatgggaaggtcagagaaaggaggtggcaccagccgaggggcctgaggagCA-TGTGGGGGCACAGAGGTCAAGTG-AAGACCTTGATCCTAGAAGGAAGGTGGTCAGCTCCGAGCTTGAGTAAGATGACAACAGAGACTGGGTGGTTGAAGAAGGCCAGATGGCGGTGACC-ttagcatggactagagagagcagatgaggaaggagagccagcagctg-------------------------------aacccactttgggggttttatttgaaggagatcagagaaatggagcgacgtggagttaaggtggggctgtgttgcttttctgtcatgagatgggagatattacagcatagctgtgtgc-gatggtgatggtatagccgagCCGGGCAGAGGAGGAAGCACAGATGCGGGTGGGTGGTAGATG----GGGTGCACTGGGAGGCAAGATCCAGCTCACCTTAGTTAGAACTTGTTTTCTCGTGCAGGCAAGAAGC-CAGATGATTAG-TGAGAAAGAGGGA--GGAAGCAGGGTCTCGCTCTTGAGACCAGAGATGGTGTAAAATCGACCTCTCAGGCAGTGCTGAGTCCTTCTTTGCAGCCCCATACTTAATGCAGACACCTGATTAAACGTCTGCCCAGCTCCCTGGTTCTGAGGGCCCTGGAGATCCACTTCCTTTCCAGGCAGTGCTTTGGCAAGCCA---GGGGACTTGTTCAAATGTCTCCACCAGATGGCGCCAGTGGGGCATTGCTGAATCCTCA i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11333255 891 + 104110932 GGGTCTGGAGCATAGCAGAGAGGCTGGGGCGAGGCCAGGGCTGGAGACTTGTGACCTGTAGATTGTGTTTATGGCCACGGGTCTGAAGGAGGCAACCTAGAGAAAAGGTGGGCCCAGCAGAGAGGAGAGCT--GAGGGGTGAGTTGGACCA------GGCCCAGGCACTGGCAAATGGGAAGGTCAGAGAAAGGAGGTGGCACCAGCCGAGGGGCCTGAGGAGCA-TGTGGGGGCACAGTAGTGAAGTG-AAGACCTTGACCCTAGAAGGAGGGTGGTCAGCTCTGAGCTTGAGTAAGATGACAACAGAGACTGGGTGGTTGAAGAAGGCCAGATGGCGGTGACC-TTAGCATGGACTAGAGAGAGCAGGTGAGGAAGGAGAGCCAGCAGCTG-------------------------------AACCCACTTTGGGGGTTTTATTTGAAGGAGATCAGAGAAATGGAGCGACGTGGGGTTAAGGTGGGGCTGCGTTGCTTTTCTGTCATGAGATGGGAGATATTACAGCATAGCTGTGTGC-GATGGTGATGGTATAGCCGAGCGGGGCAGAGGAGGAAGCACAGATGCGGGTGGGTGGTAGATG----GGGTGCACTGGGAGGCAAGATCCAGCTCACCTTAGTTAGAACTTGTTTTCTCGTGCAGGCAAGAAGC-CAGATGATTag-tgagaaagaggga--ggaagcaggGTCTCGCTCTTGAGAGCAGAGACGGTGTAAAATCGACCTCTCAGGCAGTGCTGAGTCCTTCTTTGCAGCCCCACACTTAATGCAGACACCTGATTAAACATCTGCCCAGCTCCCTGGTTCTGAGGGCCCTGGAGATCCACTTCCTTTCCAGGCAGTGCTTTGGCAAGCCA---AGGGACTTGTTCAAATGTCTCCACCAGATGGCGccagtggggcattgctgaaaccTCA i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34433885 891 + 128595539 gggtctggagcatagcagagaggctggggcgaggccagggctggagacttgtgacctgtagattgtgtttatggccacgggtctgaaggaggcaacctagagaaaaggtgggcccagcagagaggagagct--gaggggtgagttggacca------ggcccaggcactggcaaatgggaaggtcagagaaaggaggtggcaccagccgaggggcctgaggagCA-TGTGGGGGCACAGAGGTCAAGTG-AAGACCTTGACCCTAGAAGGAAGGTGGTCAGCTCCGAGCTTGAGTAAGATGACAACAGAGACTGggtggttgaagaaggccagatggcagtgacc-ttagcatggactagagagagaaggtgaggaaggagagccagcagctg-------------------------------aacccactttgggggttttatttgaaggagatcagagaaatggagcgacgtggggttaaggtggggctgcgttgcttttctgtcatgagatgggagatattacagcatagctgtgtgc-gatggtgatggtatagCCCAGCCGGGCAGAGGAGGAAGCACAGATGCAGGTGGGTGGTAGATG----GGGTGCACTGGGAGGCAAGATCCAGCTCACCTTAGTTAGAACTTGTTTTCTCGGGCAGGCAAGAAGC-CATATGATTAG-TGAGAAAGAGGGA--GGAAGCAGGGTCTCGTTCTTGAGACCAGAGATGGTGTAAAATCGACCTCTCAGGCAGTGCTGAGTCCTTCTTTGCAGCCTCACACTTAATGCAGACACCTGATTAAACGTCTGCTCAGCTCCCTGGTTCTGAGGGCCCTGGAGATCCACTTCCTTTCCAGGCAGTGCTTTGGCAAGCCA---GGGGACTTGTTCAAATGTCTCCACCAGATGGCGCCAGTGGGGCATTGCTGAAACTGCA i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87917660 879 - 158406734 gggtctggagcacaggagagaggccggaacgaggccagggctggagagttgtgacctgtagattgtgtttatggccacgggtctggaggaggcaacctagagaaaaggggggcacagcagagagtggagctggggggggcgagttggaccaggaccgggcccagacactggcaagtggaaaggtcagagaaaggaggtggcaccagcc---------gaggagta-tgtgggggcacagaggtcaagtg-aagACCTTGACCCTAGAAGGAAGGTGGTCAGCTCAGAGACTGAGTAAGATGACGACAGAGACTG---GGTTGAAGAAGGCCAGATGGCGGTGACC-TTAGCATGGACTAGAGAGAGCGGATGAGGAAGTAGAGCCCGCAGCTG-------------------------------ATCTCACTTTGCAAGTTTTATTTGAAGGAGATGAGAGGAATGGAGCCATGTGGGGTTAAGACAGGGTTGCGTTGCTTTTCTGTTGTAAGATGGGAGTTATTACAGCATAGCTGTGTGC-GATGGTGATGGTCTAGCCCAGTGGGGCAGAGGAGGAAGCACAGATGTGGGTGGGCTGTAGATG----GGGAGCTCTGGGAGACAAGATCCCGCTCACC----TTAGAGC---TTTTCTCATGCTGGCAAGAAGC-CAGGTGAACATCTGAGAGGGAGGGAGGGGAAGCAGAGGCTCAGGCTTGAGAACAGAGACGGTGTAAAATCGACCTCTCAGGCAGTGCTGAGTGCATCTTTGCGGCCCCACACTTAACACAGACACCTGATTAAACATCTGCCCAGCTCCCTGGTTCTGAGGGCCCTGGAAATCCACTTCCTTTCCAGGCAGTGCTTTGGCAAGCCA---GGGGACTTGTTCAAATATCTCCACCAGATGGCGCCAGTGGGGCATTGCTGAAAC---- i calJac3.chr6 C 0 C 0 s mm10.chr2 49763986 808 + 182113224 GAGTCTAAAGCTCAGC--AGAGTCCAGAGTCAG---AGGCCTAGAGAGTGAAGACCCACAGATTGTGTTTACAGTCTGATGTTT-------------TAGAGTCCAGG--------GTAGAGGGAAGAGTG--GAAGG------TGGACT-------GGCCTGAAAACTGACAAGT----AGGTCATGGAAAGGAGGTGGCACGAG-GGTAAGATCTGA-----A-TAAGAGGGTGTAAGGTTCCAGGG-A----------------------------------------------------GACAGAGACTGGGTAGTTGGTGAAAGCCAGATGGTGGTGAAC-TTGGGCAGCTTTAGGCAGTCTGTGTGGAGCTGGATGGCGAGTGGCTGCTGTGCTGATGATAGTGATAGTGAGGAATGAGACAGCAGCTGTGAGTTACATTTGATGGAAGCCAGAGATGTGGAG-GATGTAG-GTTGACATAGG-------TGTCTATC--TCAAAAAGCAGATGATATTGTTGC-TAGTTATCAACTGGTGGTATCCATCCAGCTAAGGT-ggcagaggtggaggtgcagatgcagcaggaaggtaggtg----gggtaggc--agaggtcaaa--ctgctcagc----actgggcctccctttttttccaagtaagaagcatagattatcagcagtgagggagggg--aga---agggctgtaggcctgagaagagagacagtgtgaaacggtcctctcaggcagcatggAGTGTTTGTCTGAGGCTCCACACTGAGTGTAGACACCCAGTTAAATATTTATCCAGCTCTCTGGTTCTGAGGGCCCTGGAGAT-AGCTCCTTTTCTTGACAATGCATTGGCAACCCAAATGTGGACTTATTCCAATATATCCACCAGATGGCGCTGTAAGGGCATTGTTGAATTCTCA i mm10.chr2 I 3269 I 165 e canFam3.chr19 50672712 3389 + 53741614 I a score=1220552.000000 s hg38.chr2_GL582966v2_alt 89622 420 + 96131 GATGTTTTCTGAA--------AGACGGAA---GGCAGAATGGTCT-TTTTTCTTGGTTTTCCTATATTTAGACCATTTTAtctcaaacttgagtagtaaatagagtattttgaaaggaatacaattctcacagatccccagagttgatttaaattattttattataatac-----aatttgcacattgtaaacagtatacattcccta--cttacagatcttatacaactgtcaagtcaaaacaaatttagaaattaaatcgaaataaaaccacaaataaaaagtccaaaccaccaa----acttca-cataatttaatgaaaga-----agggc-tttttctgaaaataaagagctaggtgcaatgcgaccccggagtgcgttgcttc--ttgtagagtttgggatgcctgttttt-tgtgtgtcgtggtgtgactcaattctTtcactcct s panTro4.chr2B 153202434 420 + 247518478 GATGTTTTCTGAA--------AGACGGAA---GGCAGAATGGTCT-TTTTTCTTGGTTTTCCTATATTTAGACCATTTTAtctcaaacttgagtagtaaatagagtactttgaaaggaatacaattctcacagatccccagagttgatttaaattattttattataatac-----aatttgcacattgtaaacggtatacattcccta--cttacagatcttatacaactgtcaagtcgaaacaaatttagaaattaaattgaaataaaaccacaaataaaaagtccaaaccaccaa----acttca-cataatttaatgaaaga-----agggc-tttttctgaaaataaagagctaggtgcaatgcgaccccggagtgcgttgcttc--ttgtagagtttgggatgcctgttttt-tgtgtgtcgtggtgtgactcaattctTtcactcct i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38410240 421 + 135000294 GATGTTTTCTGAA--------AGACTGAA---GGCAGAATGGTCT-TTTTTCTTGGTTTTCCTATATTTAGACCATTTTGTCTCAAACTTGAGTAGTAAATAGAGTACTTTGAAAGGAATACAATTCTCACAGATCCCCAGAGTTGatttaaattattttattataataC-----AATTTGCACATTGTAAACAGTATACATTCCCTA--CTTACAGATCTTATACAACTGTCACATCAAAACAAATTTAGAAATTAAATTGAAATAAAACCACAAATAAAAAGTCCAAACCACCAA----ACTTCA-CATAATTTAATGAAAGA-----AGGGCTTTTTTCTGAAAATAAAGAGCTAGGTGCAATGCGACCCCGGAGTGCGTTGCTTC--TTGTAGAGTTTGGGATGCCTGTTTTT-TGTGTGTCGTGGTGTGACTCAATTCTTtcactcct i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82361868 428 - 85365473 GCTGTTTTCTGAA--------AGACCGAAGGTGGCAGAATGGTCT-TTTTTCTTGGTTTTCCTGTATTTAGACCATTTTAtctcaaacttgagtagtaaatacagtactttgaaaggaatacaattctcacagatcccaagagttgatttaaattattttattataatacttaagtatttgcacattgtaaacagtatacatttccta--cttacagatcttatacaactgtcaagtcaaaacaaatttagaaattaaattgaaataaaaccacaaataaaaagtccaaaccaccaa----acttca-cataatttagtgaaaga-----agggc-tttttctgaaaataaagagctaggtgcaatgcgaccccggagtgcgttgcttc--ttgtagaatttgggatgcccgttttt-tgtgtgttgtggtgtgactcaattctTtcactcct i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11973816 387 + 106825570 GATGTTTTCTGAA--------AGACTGAA---GGCAGAATGGTCT-TTTTTCTTGGTTGTCGTATATTTAGACCATTTTAtctcaaacttgagtagtaaatagagtactttaaaaggaatacaattctcacagatccccagagttgatttaaattattatattataatacttaagtatttgcatattataaaca--------------------------------------------aaaacaaatttggaaattaaattgaaataaaaccacaaataaaaaatccgaaccacaaaacccacttca-cataatttaatgaaaga-----agggc-tttttctgaaaataaagagctaagtgcaatgcaaccccggagtgcgttgcttc--ttgtagagtttgggatgcctgttttt-tgtgtgtcgtggtgtgtctcaattctTtcacttct i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37676981 387 + 132586672 GACGTTTTCTGAA--------AGACTGAA---GGCAGAATGGTCT-TTTTTCTTGGTTGTCGTATATTTAGACCATTTTAtctcaaacttgagtagtaaatagagtactttaaaaggaatacaattctcacagatccccagagttgatttaaattattatattataatacttaagtatttgcatattataaaca--------------------------------------------aaaacaaatttggaaattaaattgaaataaaaccacaaataaaaaatccgaaccacaaaacccacttca-cataatttaatgaaaga-----agggc-tttttctgaaaataaagagctaagtgcaatgcaaccccggagtgcgttgcttc--ttgtagagtttgggatgcctgttttt-tgtgtgtcgtggtgtgtctcaattctttcacttct i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11334146 387 + 104110932 GATGTTTTCTGAA--------AGACTGAA---GGCAGAATGgtct-tttttcttggttttcgTATATTTAGACCATTTTATCTCAAACTTGAGTAGTAAATAGAGTACTTTAAAAGGAATACAATTCTCACAGATCCCCAGAGTTGatttaaattattgtattatAATACTTAAGTATTTGCATATTgtaaaca--------------------------------------------aaaacacatttagaaattaaattgaaataaaaccacaaataaaaagtccaaaccacaaaacCCACTTCA-CATAATTTAATGAAAGA-----AGggc-tttttctgaaaataaagagCTAAGTGCAATGCAACCCCGGAGTGCGTTGCTTC--TTGTAGAGTTTGGGATGcctgttttt-tgtgtgttgtgGTGTGTCTCAATTCTTTCAattct i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34434776 387 + 128595539 GATGTTTTCTGAA--------AGACTGAA---GGCAGAATGGTCT-TTTTTCTTGGTTTTCGTATATTTAGACCATTTTAtctcaaacttgagtagtaaatagagtactttaaaaggaatacaattctcacagatccccagagttgatttaaattattgtattataatacttaagtatttgcacattgtaaaca--------------------------------------------aaaacaaatttggcaattaaattgaaataaaaccacaaataaaaagtccgaaccacaaaacccacttca-cataatttaatgaaaga-----agggc-tttttctgaaaataaagagctaggtgcaatgcaaccccggagtgcgttgcttc--ttgtagagtttgggatgcctgttttt-tgtgtgtcatggtgtgtctcaattctttcacttct i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87918539 418 - 158406734 -ATGTCTTCTGAA--------AGACTGAA---AGCAGAATGGTC--TTTTTCTTGGTGTTCCTGTATTTATACCATTTTGTCTCAAACTTGAGTAGTAAATAGAGTACTTTTAAAGGGATAAAATTCTCACAGATCCCCAGAGtttatttaaattattttattataataCTTAAGTATTTGCACATTTTAAACATTATACATTCCCTA--CTTACAGATCTTATACAACTGTC-----AAGACAAATTCAGGAATTAAATTGAAATAAAACCACAAATAAAAAGTCCAAACCACCAA----ACTTCA-CATAATTTAATGAAAAA-----CGGGC-TTTTTCTAAAAATAAAGAGCTAGGTGAAGTGTGACTTCGGAGTTCGTTGCTTC--TTGCCGAGTTTGGGATGCCTGTTCTT-CGTGTGTTGTGGCGTGACTCAATTCTTtcactcct i calJac3.chr6 C 0 C 0 s mm10.chr2 49764959 426 + 182113224 GATATTTATCGAGCTACAGCTATATAGAG---GTGGGTGAAATCTATCTCCCATATTTCCCTTATATTTAACTTACATtttcttaaacatgactggtaaa-agaata-tttctaagaaatataattctcagaggtccccaacgttcgttgaacttattttattataatacttaaatatttataagttcaaaataatatacgttccctgttcttacatatttaacacagccataaagtcaaaacaaattttaaaatgacattaaa--------acaagtcagaaatccaaaccactta----actgtatcataatttaacaaaagatgaattgagt-tttcatcgaaaataaacagaaacgtgcagtgtgactgtg--------TGCTTCCGCTGT-GAGTCTGACGTGCCCTCGCTTGCATGTGCCTTGACTGGACCAAGGTGTCACACTCCT i mm10.chr2 I 165 I 2913 e canFam3.chr19 50672712 3389 + 53741614 I a score=2382326.000000 s hg38.chr2_GL582966v2_alt 90042 823 + 96131 gtactcccagcactctgagaggctgaggcagcaggatggcttgagctcaggagtttgagacaagcctggacaacttagcaagaccttgtctttactaaaaat-----aaaaaaattagccaggtgtggtagtgcatgcctgtagctccagtgacttggaagggtgagctgggaggatcatttcagctggagagtttgaggctgcagtgagctgtgatcatgccaccacactctagcctgggtgacagagtgagattctacctcaaaaataaataaacaaataaaaacaaaTACATGAAGATTAGCCTAGTGCCTGGCACTGAACAAGCACTCC---GTGCTCATCTGTGTTGTCCTCatcacctgatcctgtctcctcattctacatcccaaagaggcgggatgagctgtcaagatcccataactatgagtggtagatcctgggctaagagcgatgatcttctCTGcaacagttctcaaagttcttggccttaggaccttttctcctcttaaaaaggatcaatagactgggtatggtggctcacgcctataatcccagcactttgggaggccaaggcaggaggatcacttgaggccaggcgtttgaaaccagc--------cttagcgagactctgtctcaataataata----ataataaaataaaat--aaattaaaaattagctaggtatggcagcttacgcctgtagtcccaaccacttgggaggctgaggtgggaa-----attgagcccagtaatttgaggctgtggtgagccatgtttgtgtcactgcactctagtctgggtgacagaatgacaatctttctcaaaaaaa----caaacaaaaaagg s panTro4.chr2B 153202854 824 + 247518478 gtactcccagcactctgagaggctgaggcagcaggatggcttgagctcaggagtttgagacaagcctggacaacttagcaagaccttgtctttactaaaaat----aaaaaaaattagctaggtgtggtagtgcatgcctgtagctccagtgatttggaagggtgagctgggaggatcatttcagctggagagtttgaggctgcagtgagctgtgatcatgccaccacactctagcctgggtgacagagtgagatcctgcctcaaaaataaataaacaaataaaaacaaaTACATGAAGATTAGCCTAGTGCCTGGCACTGAACAAGCACTCC---GTGCTCATCTGTGTTGTCCTCatcacctgatcctgtctcctcattctacataccaaagaggcgggatgagctgtcaagatcccataactatgagtggtagatcctgggctaagagcgatgatcttctCTGcaacagttctcaaagttcttggccttaggaccttttctcctcttaaaaaggatcaatagactgggtatggtgtctcacgcctataatcccagcactttgggaggccaaggcaggaggatcacttgaggccaggagtttgaaaccagc--------cttagtgagactctgtctcaataataata----ataataaaataaaat--aaattaaaaattagctaggtatggcagtgtacgcctgtagtcccaactacttgggaggctgaggtgggaa-----attgagcccagtaatttgaggctgtggtgagccatgtttgtgtcactgcactctagtctgggtgacagaatgacaatctttctcaaaaaaa----caaacaaaaaagg i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38410661 823 + 135000294 atactcccagcactctgagaggctgaggcaggaggatggcttgagctcaggagtttgagaccagcctgggcaacttagcaagaccttgtctttactaaaaat-----aaaaaaattagccaggtgtggtagtgcatgactgtagctccagtgacttgggagggtgagctgggaggatcatttcaactggagagtttgaggctgcagtgagctgtgatcatgccaccacactctagcctgggtgacagagtgagatcctgcctcaaaaataaataaacaaataaaaacaaaTACATGAAGATTAGCCTAGTGCCTGGCACTGAACAAGCACTCT---GTGCTCATCTGTGTTGTCCTCatcacctgatcctgtctcctcattctacatcccaaagaggcgggatgagctgtcaagatcccataactgtgagtggtagatcctgggctaagagcgatgatcttctCCGcaacagttctcaaagttcttggccttaggaccttttctcctcttaaaaaggatcaatagactgggtatggtggctcacgcctataatcccagcactttgggaggccaaggcaggaggatcacttgaggccaggagtttgaaaccagc--------cttagtgagactctgtctctataataata----ataaaaaaataaaat--aaattaaagattagctaggtatagtggcgtatgcctgtagtcccaactacttgggaggctgacgtgggaa-----attgagcccagtaatttgaggctgtagtgagccatgtttgtgccactgcactccagtctgggtgacagaatgacagtctttctcaaaaaaa----caaacaaaaaagg i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82362296 808 - 85365473 gtactcccagcactctgagaggctgaggcaggatgatggcttgagctcaggagtttgagaccagcttgggcaacttagcaagaccttgtctgtactaaaaat----aaaaaaaattagccaggtgtggtagtgcatgcctgtagctccagtgacttgggaggctgagctgggaggatcatttcagctggagaatttgaggctgcagtgagctgtgatcatgccaccacactctagcctgggtgacagagcaagatcctgcctcaaaaataaataaac----aaaaacaaaTACATGAAGATTACCCTAGTGCCTGGCACTGAAC-AGCACTCC---GTGCTCATCTGTGTTGTCCTTGTCACCTGATCCTGTCTCCTCATTCTACATCCCAAAGAGGTGGGATGAGCTGTCAAGATCCCATAACTATGAGTGGTAGATCCTGGGCTAAGAGCGACGATCTTCTCTGcaacagttctcaaagttcttggccttaggatcttttctcctcttaaaaaggatcaatagactgggtatggtggctcacgcctataatcccagcactttgagaggccaaggcaggaggatcatttgaggccaggagtttgaaaccagc--------cttagtgagactctgtctctataataat----------aaaataaaat--aaaatagaaattagctaggtacggtagcgtacgcctgtagtcccaactacttgggaggctgaggtgggaa-attgattgagcccagtaatttgaggctgtggtgagccatgtctgtgccactgcactccagtctgggtgacagaatgacaatctc--------aaa----c-aacaaacaagg i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11974203 834 + 106825570 gtactcccagcactctgagaggctgaggctggaggatggcttgagctcaggagtttgagaccagcctggtcaacttagcgagaccttgtctctactaaaaat-----aaaaacattagccaggtgtggtggggcatgcctgtagctccagcgacttggaaggctgagctgggaggatcatttcagctggagagttcgaggctgcagtgagctgtgatcatgccaccacactctagcctgggtgacagagcgagatcctgcctcaaaaa-gaataaacaaat-aaaacaaaTACATGAAGATTAGCCTAGTGCCTGGCACTGAATGAGCACTCTGTGGTGCTCATCTGTGTTGTCCTCATCACCTGATCCCGTCTCCTCATGCTACATCCCAAAGAGGCGGGATGCGCTGTCAAGATCCCACACCTACGAGTGGTAGATCCTGGGCTAAGAGCAATGATCTTCCCTGcaacagttctcaaagttcttggccttaggacctttactcttcttaaaaaGGATCAATGGACTGGGTAT-gtggctcatgcctacaattccagcactttgggaggccaaggcaggaggatcacttgaggccaggagtttgaaaccagc--------cttggtgagactctgtctctacaaaaaataaataaaataaaataaaat--aaaataaaaattagctaggtatggtggcatacacctgtagtcccaactgctttggaggctgaggtgggag-attgattgagcccagtaatttggggctgtgatgagccatgtttgtgccactgcactccagtctgggtgacagaatgacaatctttctcaaaaaaa-gaaccaacaaaaaaGG i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37677368 829 + 132586672 gtactcccagcactctgagaggctgaggctggaggatggcttgagctcaggagtttgagaccagcctgggcaacttagcgagaccttgtctctactaaaaat-----aaaaacattagccaggtgtggtggtgcatgcctgtagctccagcgacttggaaggctgagctgggaggatcatttcagctggagagttcgaggctgcagtgagctgtgatcatgccaccacactctagcctgggtgacagagcgagatcctgcctcaaaaa-gaataaacaaat-aaaacaaaTACATGAAGATTAGCCTAGTGCCTGGCACTGAATGAGCACTCTGTGGTGCTCATCTGTGTTGTCCTCATCACCTGATCCCGTCTCCTCATGCTACATCCCAAAGAGGCGGGATGCGCTGTCAAGATCCCACACCTACGAGTGGTAGATCCTGGGCTAAGAGCAATGATCTTCCCTGcaacagttctcaaagttcttggccttaggacctttactcttcttaaaaaggatcaatggactgggtat-gtggctcatgcctacaattccagcactttgggaggccaaggcaggaggatcacttgaggccaggagtttgaaaccagc--------cttggtgagactctgtctctacaaaaaat-----aaataaaataaaat--aaaataaaaattagctaggtatggtggcatacgcctgtagtcccaactgctttggaggctgaggtgggag-attgattgagcccagtaatttggggctgtgatgagccatgtttgtgccactgcactccagtctgggtgacagaatgacaatctttctcaaaaaaa-gaaccaacaaaaaagg i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11334533 834 + 104110932 gtactcccagcactctgagaggctgaggctggaggatggcttgagctcaggagtttgagaccagcctgggcaacttagtgagaccttgcctctactaaaaat-----aaaaacattagccaggtgtggtggtgcatgcctatagctccagtgacttggaaggctgagctgggaggatcatttcagctggagagttcgaggctgcagtgagctgtgatcatgccaccacactctagcctgggtgacagagcaagatcctgcctcaaaaa-gaataaacaaat-aaaacaaatacatgaagATTAGCCTAGTGCCTGGCACTGAATGAGCACTCT---GTGCTCATCTGTGTTGTCCTCATCACCGGATCCCGTCTCCTCATTCTACATCCCAAAGAGGCAGGATGAGCTGTCAAGATCCCACACCTATGAGTGGTAGATCCTGGGCTAAGAGCAATTATCTTCCCTGCAACAGTTCTCAAAGTTCTTGGCCTTAGGACCTTTACTCTTCTTAAAAAGGATCAATGGACTGGgtat-gtggctcatgcctacaattccagcactttgggaggccaaggcaggaggatcacttgaggccaggagtttgaaaccagc--------cttggtgagactctgtctctacaaaaaataaataaaataaaataaaattaaaaaaaaaaattagctaggtatggtggcatacgcctgtagtcccaactgctttggaggctgaggtgggag-attgaTTGAGCCCAGTAATTTGAGGCTGTgatgagccatgtttgtgccactgcactccagtctgggtgacagaatgacaatctttctcaaaaaaatgaacCAACAAAAAAGG i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34435163 829 + 128595539 gtactcccagcactctgagaggctgaggctggaggatggcttgagctcaggagtttgagaccagcctgggcaacttagcgagaccttgtctctactaaaaat-----aaaaacattagccaggtgtggtggtgcatgcctgtagctccagtgacttggaaggctgagctgggaggatcatttcagctggagagttcgaggctgcagtgagctgtgatcatgccaccacactctagcctgggtgacagagcaagatcctgcctcaaaaatgaataaacaaataaaaacaaaTACATGAAGATTAGCCTAGTGCCTGGCACTGAAGGAGCACTCT---GTGCTCATCTGTGTTGTCCTCATCACCTGATCCCGTCTCCTCATTCTACATCCCAAAGAGGCGGGATGAGCTGTCAAGATCCCACACCTACGAGTGGTAGATCCTGGGCTAAGAGCAATGATCTTCTCTGcaacagttctcaaagttcttggccttaggacctttactcttcttaaaaaggatcaatggactgggtat-gtggctcatgcctataattccagcactttgggaggccaaggcaggaggatcacttgaggccaggagtttgaaaccagt--------cttagtgagactctgtctctacaaaaaat-----aaataaaataaaat--aaaataaaaattagctaggtatggtggcatacgcctgtagtcccaactgctttggaggctgaggtgggag-attgattgagcccagtaatttgaggctgtgatgagccatgtttgtgccactgcactccagtctgggtgacagaatgacaatctttctcaaaaaagtggaccaacaaaaaagg i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87918957 823 - 158406734 gtactcccagcactttga------gaggtgggaggatggcttgagctcaggagtttgagaccagcctgggcaacatagcaagaccttgtctctactaaaaataaaaaaaaaaaattagccaggtgtgttgttgcatgcctgtagttccagtgactttggaggctgagctgggaggatcacttcagctggggaatttgaggctacagtgagctgtgatggtgccatcacactctagcccgggtgacagagtgagatcctgcctcaaaaataaataaatgaataaaaacaaaTACATGAAGATTAGCCTAGTCCCTGGTGCCAAATAAGCACTCA---ACGCCCACCTGTGTGGTCCTCatcacctgatcctgtctcctcattctacatcccaaagaggca-gatgagctgtcgagataccacaactgtgagtggtagatcctgggctaagagccatgatcttctCTGcaacagtgctcaaagttcttgcccttaggaccctttcttctcttaaatgagatcgatggactgggcatggtggctcacacctgtaatcctagcactttgggagctcaaggcaggaggatcactcaaagccaggagtttggaaccaaagtggtcagcatagtgagactctgtctctacaaaaaaa-----aaaaaaattaa-----aaattaaaaattagttgtgtatggtggcatacacctgtagtcccaactacttgggtggctgaagtgggaggattgcttgagcccaggagtttgaggctgtggtgagtgatgtttgtgccactgcactccagtctgggtgacagaatggcaatctttctaaaaaaaa-----------aaaggg i calJac3.chr6 C 0 C 0 e canFam3.chr19 50672712 3389 + 53741614 I e mm10.chr2 49765385 2913 + 182113224 I a score=311817.000000 s hg38.chr2_GL582966v2_alt 90865 127 + 96131 atcaatgagtttatatatatatatatgggttatatttattgatatgtatcatat------tagaaattaaagcaaaatatttag-----aatactgccgggttcatttaaaaaatagtaataagcccatacatgttac s panTro4.chr2B 153203678 125 + 247518478 atcaatgagtt--tatatatatatatgggttatatttattgatatgtatcatat------tagaaattaaagcaaaatatttag-----aatactgccaggttcatttaaaaaatagtaataagcccatacatgttac i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38411484 121 + 135000294 atcaatgagtt------tatatatatgggttatatttattgatatgtatcatat------tagaaattaaagcaaaatatttag-----aatactgccaggttcatttaaaaaatagtaataagcccatacatgttac i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82363104 123 - 85365473 atcaatgagtt----tatatatatataggttatatttattgatatgtatcattt------tagaaactaaaacaaaatatttag-----aatactgccaggttcatttaaaaaatagtaataagcccatacatgttac i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11975037 108 + 106825570 ATCAATGAATt-------------------tatatatattgatatgtatcatac------tggaaattaaagcaaaaaaattag-----aatactgtcagattcatttaaaaaatagtaataagcccatacatgttac i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37678197 108 + 132586672 atcaatgaatt-------------------tatatatattgatatgtatcatac------tggaaattaaagcaaaaaaattag-----aatactgtcagattcatttaaaaaatagtaataagcccatacatgttac i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11335367 108 + 104110932 ATCAATGAATT-------------------TATACATATTGATATGTATCATAC------tggaaattaaagcaaaaaatttag-----aatactgtcagattcatttaaaaaatagtaataagcCCATGCATGTTAC i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34435992 108 + 128595539 atcaatgaatg-------------------tatatatattgatatgtatcatac------tggaaattaaagcaaaaaatttag-----aatactgtcagattcatttaaaaaatagtaataagcccatacatgttac i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87919780 122 - 158406734 atcaatgagtt----tttatatatatgggttatacttactgatatggatcatat------tagaaattaaagcaaaaaatttag-----aatactgccagattcattt-acaaatagtaataagctcatacatgttac i calJac3.chr6 C 0 C 0 s canFam3.chr19 50676101 95 + 53741614 accaaagagct----tttatattcctggg-tgtatgtcttgatatgttttatataattggtataaattgaaacaaaaattttaaatatcactactgctaa-------------------------------------- i canFam3.chr19 I 3389 C 0 e mm10.chr2 49765385 2913 + 182113224 I a score=567192.000000 s hg38.chr2_GL582966v2_alt 90992 168 + 96131 cac--aaatgtgatttgtaatgaaa-ataactattttcaaaac-aaaaaa---tagccaaatggcattgttttacatttttgcaaatctctttgatgcctggttatttaatagatggcagctggatt-cccccagctgtttctgcattctgtctgttgcggtgtgctgttttggtt s panTro4.chr2B 153203803 168 + 247518478 cac--aaatgtgatttgtaatgaaa-ataactattttcaaaac-aaaaaa---tagccaaatggcattgttttacatttttgcaaatctctttgatgcctggttatttaatagatggcagctggatt-cccccagctgtttctgcattctgtctgttgcggtgtgctgttttggtt i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38411605 168 + 135000294 cat--aaatgtgatttgtaatgaaa-acaactattttcaaaac-aaaaaa---tagccaaatggcattgttttacatttttgcaaatctctttgatgcctcgttatttaatagatggcagctggatt-ccgccagctgtttctgcattctgtctgttgcggtgtgctgttttggtt i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82363227 168 - 85365473 cat--aaatgtgatttgtaatgaaa-ataactattttcaaaac-aaaaaa---tagccaaatggtattgttttacatttttgcaaatctctttgatgcctggctgtttaatagacggcagctggatt-cccccagctgtttctgcattctgtctgttgcggtgtgctgttttggtt i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11975145 170 + 106825570 catggaaatgtgatttgtaatgaaa-ataactgttttcaaaac-aaaaaa---tagcccaatggcattgttttaca-ttttgcaaatctctttgacacctggctatctcatagatggcagctggattccccccagctgtttttgcattctgtctgttacagtgtgctgttttggtt i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37678305 170 + 132586672 catggaaatgtgatttgtaatgaaa-ataactgttttcaaaac-aaaaaa---tagcccaatggcattgttttaca-ttttgcaaatctctttgacacctggctatctcatagatggcagctggattccccccagctgtttttgcattctgtctgttacagtgtgctgttttggtt i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11335475 168 + 104110932 CAT--AAATGTGATTTGTAATGAAA-ATAActgttttcaaaac-aaaaaa---tagcccaatggcattgttttaca-ttttgcaaatctctttgaCACCTGGCTATCTAATAGATGGCAGCTGGATTCCCCCCAGCTGTTTTTGCATTCTGTCTGTTGCAGTGTGCTGTTTTGGTT i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34436100 168 + 128595539 cat--aaatgtgatttgtaatgaaa-ataactgttttcaaaac-aaaaaa---tagcccaatgacattgttttaca-ttttgcaaatctctttgacacctggctatctaatagatggcagctggattccccccagctgtttttgcattctgtctgttacagtgtgctgttttggtt i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87919902 169 - 158406734 tgt--aaatatgattcataatgaaa-ataactattttcaaaacaaaaaaa---tagccaaatggcattgttttacatttttgcaaatctctttgatgtctggctatttaatagatggcagctggact-cccccggctgcttctgcattctgtctgttgcggtgtgttgttttggtt i calJac3.chr6 C 0 C 0 s mm10.chr2 49768298 159 + 182113224 cat--aactagcatttttaaggaaa-gattcgtttttttaaaa-aaaaaccctcagctaattggcattattttacattttcgtagacctctttgtctcc------tttaatggatagcagct--acttctcgggtctgcttgtgca-----tctgtttctctgcatggccttgcct i mm10.chr2 I 2913 C 0 s canFam3.chr19 50676196 163 + 53741614 cat--aaatgccatgtttaatgaaatgcgattattttctaaga-caaaca-cttagcaaaatggcatcactttgcagtttggcaaatcggtttaatattttgct---taatgggtgac-tctggatt-ctcatacctg----tgcattctctcagctgcagtgtgttcttttattt i canFam3.chr19 C 0 I 200 a score=320704.000000 s hg38.chr2_GL582966v2_alt 91160 103 + 96131 gaagtatataaagataat--ccCCCTTTGTCACACCAGACAAGATTCTTGGC----------------------CATTGGACAGCTAAGAAAACTGTGGAAT--GGGGAAGTTGGGATCATAGTGCCCG s panTro4.chr2B 153203971 125 + 247518478 gaagtatataaagataat--ccccccttgtcacacCAGACAAGATTCTTGGCGTGAATCCAATGTGTCTTGACACATTGGACAGCTAAGAAAACTGTGGAAT--GGGGaagttgggatcatagtgcccg i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38411773 103 + 135000294 gaaatatataaagataat--ccctcctcGTCACACCAGACAAGATTCTTGGC----------------------CATTGGACAGCTAAGAAAACTGTGGAAT--GGGGaagttgggatcatagtgcccg i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82363395 103 - 85365473 gaagcgtataaagataat--ccccccttgtcacacCAGACGAGATTCTTGGC----------------------CATTGGACAGCTAAGAAAActgtggaat--ggggaagttgggatcatagtgccca i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11975315 103 + 106825570 gaagtgtataaagcgaat--ccccccttgtcacacCAGACAAGATTCTTGGC----------------------CATTGGACAGCTAAGAAAActgtggaat--ggggaagttgggatcatagtgccca i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37678475 103 + 132586672 gaagtgtataaagcgaat--ccccccttgtcacacCAGACAAGATTCTTGGC----------------------CATTGGACAGCTAAGAAAACTGTGGAAT--GGGGaagttgggatcatagtgccca i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11335643 103 + 104110932 GAAGTGTATAAAGCGAAT--CCCCCCTTGTCACACCAGACAAGATTCTTGGC----------------------CATTGGACAGCTAAGAAAACTGTGGAAT--GGGGAAGTTGGGATCATAGTGCCCC i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34436268 103 + 128595539 gaagtgtataaagcgaat--ccccccttgtcacacCAGACAAGATTCTTGGC----------------------CATTGGACAGCTAAGAAAActgtggaat--ggggaagttgggatcatagtgccca i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87920071 103 - 158406734 gaagtgtatgaagagaat--cTCCCCTTGTCATGCCAGACAAGATTCTTGGC----------------------CACTGGACGGCTAAGAAAATTGTGGCTT--GGGGAAGGTgggatcatagtgcgca i calJac3.chr6 C 0 C 0 s mm10.chr2 49768457 86 + 182113224 ggagtatatgaagacaaCAGCTACCCTTATCACTTCAGAGAAGATTCTTGGC----------------------TGTT------TCGAGAAA-----GGATTCAAGGGATACAAGGGTC---------- i mm10.chr2 C 0 C 0 e canFam3.chr19 50676359 200 + 53741614 I a score=1001958.000000 s hg38.chr2_GL582966v2_alt 91263 347 + 96131 TATCACAGGCTTG-TCTG-GGA-TTGAATGAGAGAATGTGAAAGAAGAGAGAAAAAAGTCTTAGAAGAATACCTGGCAAAAATTAGGCCCCCGTGCATGTTAGCTAATGTTAAAG----TGGTCATGGGGACAGACCTG-AAAAGACAGCTGAGGTGGGACTGCAGGGAGAGAGGACAGAAATAACTGTAGGTAGGTGCTGCTATGGCAGA-GGACTTTGAAACTGGCAATCTCAACCC-AAAGAAGGGAATTGTGGAGCACCCGGAGGCAAGAATTCCTGATTCCATCTACAGCACAGTAGGCTCCTCCACTTTAATACTCCTCAGCTTCATGGTTCTCAGAGTCATAAATTCAGA s panTro4.chr2B 153204096 331 + 247518478 tatcacaggcttg-tctg-gga-ttgaatgagagaatgtgaaagaagaaagaaaaaagtcttagaagagtacctggcaaaaattaggcccctgtgcatgttagctAGTGTTAAAG----TGGTCATAGGGACAGATCTG-AAAAGATGGCTGAGGTGGGACTGCAGGGAGAGAGGACAGAAATAACTGTAGGTAGGTGCTGCTGTGGCAGA-GGACTTTGAAACTGGCAGTTTCAACCC-AAAGAAGGGAATTGTGGAGCACCCGGAGGCAAGAATTCCTGATTCCGTCTACAGCACAGTAGGCTCCTCCACTTTAATACTCCTCAGCTTCATGG----------------TTCAGA i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38411876 347 + 135000294 tatcacaggcttg-tctg-gga-ttgaatgagagaatgtgaaagaagagagaaaaaagtcttagaagagtacctggcaaaaattaggcccccgtgcatgttagctAATGTTAAAG----TGGTCATGGGAACAGACCTGTAAAGGACAGCTGAGGTGGGACTGCAGGGAGAGAGGACAGAAATAACTGTA-GTAGGTGCTGCTGTGGCAGA-GGACTTTGAAACTGGCGATCTCAACCC-AAAGAAGGGAATTGTGGGGCACCCGGAGGCAAGAATTCCTGATTCTGTCTACAGCACAGTAGGCTCCTCCACTTTAATACTCCTCAGCTTCATGGTTCTCAGAGTCACAAATTGAGA i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82363498 332 - 85365473 tatcacaagtttg-tctg-gga-ttgaatgagagaatgtgaa-------agaaaaaagtcctagaagagtacctggcaaaaattaggcccccatgcatgttagctaatgttAAAG----TGGTCATGGGGACAGACCCA---------GCTGAGGTGGGACTGCAGGGAGAGAGGACAGAAATAACTGTAGGTGGGTGCTGCAGCGGCAGA-AGACTTTGAAACTGGCATTCTCAACCC-AAAGGGGGGAGTTGTGGAGCACCCGGAGGCAAGAATTCCTGATTCTGTCTGCAGCACAGTAGGCTCCTCCACTTTAATACTCCTCAGCTTCATGGTTCTCAGAATCATAAATTCAGA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11975418 349 + 106825570 tatcacaggcttg-tctg-gga-ttgaatgagagaatgtgaaagaagagagaaaaacttcttaggagagtacctggcaaaaattaggcccctgtgcatgttagctaatgttAAAG----TGGTCATGGGGACAGACCTGAAAAGGCCAGATGAGGTGGGACTGCAGAGAGAGAGGACAGAAATAACTGTAGGTGGATGCTGCTGAGGCAGA-GGACTTTGAAACTAGCATTCTCAACCCAAAAGGAAGGAATTGTGGAGCATCTGGAGGCAAGAATTCCTGATTCCGTCTACCGCACAGGAGGCTCCAACACTTCGATACTCCTCAGCTTCATGGTTCTCAGAGTCATAAATTCAGA i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37678578 349 + 132586672 tatcacaggcttg-tctg-gga-ttgaatgagagaatgtgaaagaagagagaaaaacttcttaggagagtacctggcaaaaattaggcccctgtgcatgttagctAATGTTAAAG----TGGTCATGGGGACAGACCTGAAAAGGCCAGATGAGGTGGGACTGCAGAGAGAGAGGACAGAAATAACTGTAGGTGGATGCTGCTGAGGCAGA-GGACTTTGAAACTAGCATTCTCAACCCAAAAGGAAGGAATTGTGGAGCATCTGGAGGCAAGAATTCCTGATTCCGTCTACCGCACAGGAGGCTCCAACACTTCGATACTCCTCAGCTTCATGGTTCTCAGAGTCATAAATTCAGA i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11335746 349 + 104110932 TATCACAGGCTTG-TCTG-GGA-TTGAATGAGAGAAtgtgaaagaagagagaaaaaagtcttAGAAGAGTACCTGGCAAAAATTAGTCCCCTGTGCATGTTAGCTAATGTTAAAG----TGGTCGTGGGGACAGACCTGAAAAGGACAGATGAGGTGGGACTGcagagagagaggacagaaatAACTGTAGGTGGATGCTGCTGAGGCAGA-GGACTTTGAAACTAGCATTCTCAACCCAAAAGGAAGGAATTGTGGAGCATCCGGAGGCCAGAATTCCTGATTCCGTCTACCGCACAGGAGGCTCCAACACTTCGATACTCCTCAGCTTCATGGTTCTCAGAGTCATAAATTCAGA i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34436371 349 + 128595539 tatcacaggcttg-tctg-gga-ttgaatgagagaatgtgaaagaagagagaaaaacgtcttagaagagtacctggcaaaaattaggcccccatgcatgttagctaatgttAAAG----TGGTCATGGGGACAGACCTGAAAAGGACAGATGAGGTGGGACTGCAGAGAGAGAGGACAGAAATAACTGTAGGTGGATGCTGCTGAGGCAGA-GGACTTTGAAACTAGCATTCTCAACCCAAAAGGAAGGAATTGTAGAGCATCCGGAGGCAAGAATTCCTGATTCCGTCTACAGCACAGGAGGCTCCAACACTTCGATACTCCTCAGCTTCGTGGTTCTCAGAGTCATCAATTCAGA i chlSab2.chr10 C 0 I 221 s calJac3.chr6 87920174 351 - 158406734 catcacaggcttc-tctg-gga-ttgaatgagagaatgtgaaagtagagagaaaaaagtcttagaagagtacctggc-aaaattaggtccccatgcatgttagctactgttaAAGTGGTTGGTCATGGGGACAGACCTGACGAGGACAGAGGAGGTGGGACTGCAGGGAGAGAGGATAGAAATAACTGTAGGTGGGTACTGCTGAGGCAGAGGGACTTTGAAACTCGCATTCCCAATGC-AAAGGGAGGAATTGGGGATCGCCTGGAGGCAAGAATTCCTGATTCTGTC-ACAGCAGCGTAGCCTCCTCCGCTTTAATACTCCTCAGCTTCACGGTTCTCAGAGTCAGAAGCTCACA i calJac3.chr6 C 0 C 0 s mm10.chr2 49768543 275 + 182113224 ---------CTTA-TGTA-GGAGTCTGACAGGACAATATGGAAGGCATTAAAGGAAA--CCCAGACAAGAACTTAGCCAAACTTGACCTTTAGAGTA------CTAATCTTATAG----CTGTTGTGAGGTCA-------AAAGGAAAGT---AGTGTGTCTGTAGGGA-CCAGGACAGAGGGACCTG-AGGTGGGCACTGCT------GG-TGGCCTGGAGACTACCACCCAGAACTC-AGAAGGCGACGCGGTGGCAC---------CAGGAAGACCT-----------------------------TGCTTCAGTAGT-CTGGGTTATGCACTTCTCCTGGTCAAAAATGCGGA i mm10.chr2 C 0 C 0 s canFam3.chr19 50676559 239 + 53741614 TGtcacaggcttgctctgagga-ttgaatgagag-atgtgaaag--GAGAGTGGAAGGTCCTAGGAGAGCGTGTGGCCGTAATCAGGGTCGCACAAGCATTAGCCGATGTTACGG----TGGTTGTGGGGACAGGCCTAAAACGCATAGGCAAAGCGGGGCC-CAGGGCAGGTGGACA-----------------------CTGTGGCACG-GGACTCGGAAACCAGCATTATGAGTTC-AAAGGAAGCGATCATG----ACCTGGA-------------------------AGGGCAGTGG------------------------------------------------------- i canFam3.chr19 I 200 C 0 a score=1779247.000000 s hg38.chr2_GL582966v2_alt 91610 464 + 96131 GCAACTAAAATTGTTCCTCCACAGCAGATTGTACCAAAGCTCCAATGAGATAAATCCACTTCTATTCAGCAGTGATAAGTAGAGTACAATTGGTAATTCTTATAATGTGGGGATTGAATTATAAAAAGGCAAAAGAAAAACTAAAACTATGTACTGTTTGGATTAAGCTTAAATCCAC-TGCAAGCAATTGCAAAAGCCCAAGTTGGGTGTGAAAACGGTCTCTAAATACTTCTTGCAAAACCCT----TGTATAATTAACTTCCTTCATTAGCT--TTCCCCACCCCTTCTAAAGAAAGGTGATTTTATTTCCTCCTAAATCTGGTCACACGTTGCCACTTTGAATTACCATCTCCAGTTTGGCAGAGTGCCAG--GGGAAGTcctagagcaggtcagttggtccagtcccctgcctctaagtgagtgagtggctaCTTGGA----------AGAGAG-----TCAACAGGACTGGGTTTT--------AAAGAT s panTro4.chr2B 153204427 464 + 247518478 GCAACTAAAATTGTTCCTCCACAGCAGATTGTACCAAAGCTCCAATGAGATAAATCCACTTCTATTCAGCAGTGATAAGTAGAGTACAATTGGTAATTCTTATAATGTGGGGATTGAATTATAAAAAGGCAAAAGAAAAACTAAAACTATGTACTGTTTGGATTAAGCTTAAATCCAC-TGCAAGCAATTTCAAAAGCCCAAGTTGGGTGTGAAAACGGTCTCTAAATACTTCTTGCAAAACCCT----TGTATAATTAACTTCCTTCATTAGCT--TTCCCCACCCCTTCTAAAGAAAGGTGATTTTATTTCCTCCTAAATCTGGTCACACGTTGCCACTTTGAATTACCATCTCCAGTTTGGCagagcgccag--gggaagtcctagagcaggtcagttggtccagtccccttcctctaagtgagtgagtggctaCTTGGA----------AGAGAG-----TCAACAGGACTGGGTTTT--------AAAGAT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38412223 464 + 135000294 GCAACTAAAATTGTTCCTCCACAGCAGATTGTACCAAAGCTCCAATGAGATAAATCTACTTCTATTCAGCAGTGATAAGTAGAGTACAATTGGTAATTCTTATAATGTGGGGATCGAATTATAAAAAGGCAAAAGAAAAACTAAAACTATGTACTGTTTGGATTAAGCTTAAATCCAC-TGCAAGCAATTGCAAAAGCCCAAGTTGGGGGTGAAAACGGTCTCTAAATACTTCTTGCAAAACCCT----TGTATAATTAACTTCCTTCATTAGCT--TTCCCCACCCCTTCTAAAGAAAGGTGATTTTATTTCCTCCTAAATCTGGTCACACATTGCCACTTTGAATTACCATCTCCAGTTTGGCAGAGTGCCAG--GGGAAGTCCTAGAGCAGGTCAGTTGGTCCAGTCCCCTGCCTCTAAGTGAGTGAGTGGCTACTTGGA----------AGAGAG-----TCAACAGGACTGGGTTTT--------AAAGAT i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82363830 464 - 85365473 GCAACTAAAATTGTTCCTCCACAGCAGATTGTACCAAAACTCCAATGAGATAAATCCACTTCTATTGAGCAGTGATAAGTAGAGTACAATCGGTAATTCTTATAGTGTGGGGATTGAATTATAAAAATGCAAAAGAAAAACTAAAACTATGTACTGTTTGGATTAAGCTTAAATCCAC-TGCAAGCAATTGCAAAAGCCCAAGTTGGGGGTGAAAACGGTCTCTAAATACTTCTTGCAAAACCCT----TGTATAATTAACTTCCTACATTAGCC--TTCCCCACCCCTTCTAAAGAAAGGTGATTTTATTTCCTCCTAAGTCTGGTCACACGCTGCCACTTTGAATTGCCATCTCCAGTTTGGCagagcgccag--gggaagtcctagagcaggtcagttggtccagtcccctgcctctaagtgagtgagtggctaCTTGGA----------AGAGAG-----TCAACAGGACTGGGTTTT--------AAAGAT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11975767 466 + 106825570 GCAACTAAAATTATTCCTCCATAGCAGATTGTACCAACGCTCCAATGAGATAAATCCACTTCTATTCAGCAGTGATAAGTAGAGTAAAATTGGTAATTCTTATAATGTGGGGATTGAATTATAAAAAGGCAAAAGAAAAACTAAAATTATGTACTGTTTGGATTAAGCTTAAATCCAC-TGCAAGCAATTGCAAAAGCCCAAGTTGGGGGTGAAAACGGTCTCTAAATACTTCTTGCAAAACCCT----TTTGTAATTAACTTCCTTCATTAGCC--TTCCCCACCCCTTCTAAAGAAAGGTGATTTTATTTCCTCCTAAATCTGGTCACACGTTGCCCCTTTGAATTACCATCTCCAGTTTGGCAGAGCGCCAGTTTGGCAGTcctagagcaggtcagttggtccagtcccctgcctctaagtgagtgactggctaCTTGGA----------AGAGAG-----TCAACAGGACTGGGTTTT--------AAAGAT i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37678927 466 + 132586672 GCAACTAAAATTATTCCTCCATAGCAGATTGTACCAATGCTCCAATGAGATAAATCCACTTCTATTCAGCAGTGATAAGTAGAGTAAAATTGGTAATTCTTATAATGTGGGGATTGAATTATAAAAAGGCAAAAGAAAAACTAAAATTATGTACTGTTTGGATTAAGCTTAAATCCAC-TGCAAGCAATTGCAAAAGCCCAAGTTGGGGGTGAAAACGGTCTCTAAATACTTCTTGCAAAACCCT----TTTGTAATTAACTTCCTTCATTAGCC--TTCCCCACCCCTTCTAAAGAAAGGTGATTTTATTTCCTCCTAAATCTGGTCACACGTTGCCCCTTTGAATTACCATCTCCAGTTTGGCAGAGCGCCAGTTTGGCAGTcctagagcaggtcagttggtccagtcccctgcctctaagtgagtgactggctaCTTGGA----------AGAGAG-----TCAACAGGACTGGGTTTT--------AAAGAT i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11336095 466 + 104110932 GCAACTAAAATTGTTCCTCCATAGCAGATTGTACCAACGCTCCAATGAGAGAAATCCACTTCTATTCAGCAGTGATAAGTAGAGTAAAATTGGTAATTCTTATAATGTGGGGATTGAAttataaaaaggcaaaagaaaaactgaaattatgtACTGTTTGGATTAAGCTTAAATCCAC-TGCAAGCAATTGCAAAAGCCCAAGTTGGGGGTGAAAACGGTCTCTAAATACTTCTTGCAAAACCCT----TGTGTAATTAACTTCCTTCATTAGCC--TTCCCCACCCCTTCTAAAGAAAGGTGATTTTATTTCCTCCTAAATCTGGTCACACGTTGCCCCTTTGAATTACCATCTCCAGTTTGGCAGAGCGCCAGTTTGGCACTCCTAGAGCAGGTCGGTTGGTCCAGTCCCCTGCCTCTAAGTGAGTGACTAGCTACTTGGA----------AGACAG-----TCAACAGGACTGGGTTTT--------AAAGAT i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34436941 466 + 128595539 GCAACTAAAATTGTTCCTCCATAGCAGATTGTACCAACGCTCCAATGAGATAAATCCACTTCTATTCAGCAGTGATAAGTAGAGTACAATTGGTAATTCTTATAATGTGGGGATTGAATTATAAAAAGGCAAAAGAAAAACTAAAATTATGTACTGTTTGGATTAAGCTTAAATCCAC-TGCAAGCAATTGCAAAAGCCCAAGTTGGGGGTGAAAACGGTCTCCAAATACTTCTTGCAAAACCCT----TGTGTAATTAACTTCCTTCATTAGCC--TTCCCCACCCCTTCTGAAGAAAGGTGATTTTATTTCCTCCTAAATCTGGTCACACGTTGCCCCTTTGAATTACCATCTCCAGTTTGGCAGAGCGCCAGTTTGGCAGTcctagagcaggtcggttggtccagtcccctgcctctaagtgagtgactggctaCTTGGA----------AGAGAG-----TCAACAGGACTGGGTTTT--------AAAGAT i chlSab2.chr10 I 221 C 0 s calJac3.chr6 87920525 473 - 158406734 GCAATTAAAATGGTTCCTCCACAGCA-AGTGTACCAAAGCTCCAATGAGATAAATCCACTTCTATTCAGCAGTGATAAGTAAAGTACAACTGGTAGTTCTTATAGTGTGGGGATTGAATTATAAAAAGGCAAAAGAAAAGATAAAACTATGGACTGTTTGGATTAAGCTTAAATCCAC-TGCAAGCAATTGCAAAAGCCAACATTGGGGGTGAAAAGAGTCTCTAAATACGTCTTGCAAAACGCT----TGTGTAATTAACTTCTTTCTTCAGCC--TTCCCCACCCTTTCTAAAGAAAGGTGATTTTATTTCCTCCTATATCTGGTCACACGTTGCCACTTTGAATTACCATCTCCAGTTTGGCACAGCGCCAG--GGACAGTCCTGTAGCGggtcagttggtccagtcccctgcctctcagtgagtgagtgactgctcggaaccctcaaagagagaG-----TCAACAGGACTGGGTTTT--------AAAGAT i calJac3.chr6 C 0 C 0 s mm10.chr2 49768818 400 + 182113224 ---------ACGGTTCCTCCGTGGCAGATTGTATC---------------------------------GCCACGATAAGCAAAG-GCAACTGGTAATTCTTATAA-ATGGGGATTGAACTGTAGAAAGGCGCAGGGAAAGATAAAACTATGTACTGTTTGGATTAAGCTTAAATCTAC-TGCAAGCAGTTTCAAAAGCCAAAGTTGAGGGT-----TGGAGTCCAAATATGTCTTGCAAAACCCTTCTGTGTATAATTAGCTTCTTTCTTCAGCC--TTCTCCACCCCTTCTAGAGCAAGGTGATTTTATTTCCTTCTAAATCTGGCCACAGGTCCCCACTCTGAATTGCTGGCCTCAGGTTGGCTGAGCCTCGG---GTCAGTGCACTGCCTGGTCTCTTGACCTGGTCCCTTGCTACT-------------GCTGGGTGAG----------AGAGCGTCTCTTCTACAGGCCTGGG------------------ i mm10.chr2 C 0 C 0 s canFam3.chr19 50676798 441 + 53741614 ----------------------------TTGCACCAACGCGCC--TGAGGTAGATTCGCTTCTCTTCAGCAGTGATACGTAAGGAGCAACAGGCAATTCCTACAACGTGGGCATTGAATCGTAGGAAGGCAAAAGAAAAGATAAAAC--TGAACTGTTTGGATTAAGCATAAATCCACTTGCAGGCAATTACAAAATCCGAAGTTGGGGGGGAACA---TCTCTAAATA---CTTGCAAGTCTCT----TGGATAATTAGCCTCTTTATTCAGCTAATTTCTCACTCCTTATAAAGAAAGGCGATTTTATTCCCTTCTGAGTCTGGTCACACGTTGTCACTCTGGAGTGCCATCTCCAGTTTGGCAGAGGCCCAG--GGACAGCCTCCTAGCAGGTCACTCAGGCCACGACCGTGCTTTTAGGTGCGTAA----CGACTCTGAGCCATCTA--AGGTCA-----TCAACAGAACTGGGCTTTCttttttaaaagat i canFam3.chr19 C 0 I 162 a score=433451.000000 s hg38.chr2_GL582966v2_alt 92074 168 + 96131 TCTCCAGACT--------------CCTCAGTCT--------------------CTCTGGGATTAGAACAGA--CAGAAATGCTTTATCTCAGGGCAAAACCATTTACCTTTAAAATTTATATCTATTTTCTCCCATGAATTTATCTAAGGATATGAAGATCCAGATAGTGGGAAGGATGGATGAGAGCATCCTGCTGGAATCCA s panTro4.chr2B 153204891 168 + 247518478 TCTCCAGACT--------------CCTCAGTCT--------------------CTCTGGGATTAGAACAGA--CAGAAATGCTTTATCTCAGGGCAAAACCATTTACCTTTAAAATTTATATCTATTTTCTCCCATGAATTTATCTAAGGATATGAAGATCCAGATAGTGGGAAGGATGGATGAGAGCATCCTGCTGGAATCCA i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38412687 168 + 135000294 TCTCCAGACT--------------CCTCAGTCT--------------------CTCTGGGATTAGAACAGA--CAGAAATGCTTTATCTCAGGGCAAAACCATTTACCTTTAAAATTTATATCTATTTTCTCCCATGAATTTATCTAAGGATACGAAGATCCAGATAGTGGGAAGGATAGATGGGAGCATCCTACTGGAATCCG i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82364294 168 - 85365473 TCTCCAGACT--------------CCTCAGTCT--------------------CTCTGGGATTAGAACAAA--CAGAAATGCTTTATCTCAGGGCAAAACCATTTACCTTTAAAATTTGTATCTATTTTCTCCCATGAATTTATCTAAGGATATGAAGATCCAAATAGTGGGAAGGATGGATGAGAGCATCCTACTGGAATCCA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11976233 157 + 106825570 TCTCCAGATT--------------CCCCAGTCT--------------------CTCTGGGATTAGAACAGT--CAGAAATGCTGTATCT-----------CATTTACCTTTGAAATTTATATCTATTTTCTCCCATGAATTTATCTAAGGAGATGAAGATCCCGATAGTGGGAAGGATGGATGGGAGCATCCTACTGGAATCCT i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37679393 157 + 132586672 TCTCCAGATT--------------CCCCAGTCT--------------------CTCTGGGATTAGAACAGT--CAGAAATGCTGTATTT-----------CATTTACCTTTGAAATTTATATCTATTTTCTCCCATGAATTTATCTAAGGAGATGAAGATCCCGATAGTGGGAAGGATGGATGGGAGCATCCTACTGGAATCCT i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11336561 157 + 104110932 TCTCCAGACT--------------CCCCAGTCT--------------------CTCTGGGATTAGAACAGT--CAGAAATGCTGTATCT-----------CATTTACCTTTGAAATTTATATCTATTTTCTCCCATGAATTTATCTAAGGAGATGAAGATCCCGATAGTGGGAAGGATGGATGGGAGCATCCTACTGGAATCCT i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34437407 157 + 128595539 TCTCCAGACT--------------CCCCAGTTT--------------------CGCTGGGATTAGAACAGT--CAGAAATGCTGTATCT-----------CATTTACCTTTGAAATTTATATCTATTTTCTCCCATGAATTTATCTAAGGAGATGAAGATCCCGATAGTGGGAAGGATGGATGGGAGCATCCTACTGGAATCCT i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87920998 167 - 158406734 TCTGCAGACT--------------CCCCAGTA---------------------CTCTGGGATTAGAGCAGT--TGGAAATGCTTTATCTCAGGGCTGAACCATTTACCTTTAAAATGTATGTCTGTTTTCTCCCATAAATTTATCTAAGGTGATGAAGATCCAGATAGTGGGTAGGATTGATGGGAACATCCTACTGGAATTCA i calJac3.chr6 C 0 C 0 s mm10.chr2 49769218 56 + 182113224 -------------------------------------------------------CAAGGAGCATAACAGAAGCAGATCTGCTTT------------------------------------TCCATTC---------------------------------------------------------AGCAGCCTGTCACAGTCCA i mm10.chr2 C 0 C 0 s canFam3.chr19 50677401 186 + 53741614 tcccCAGACCTGGGTTTTCAATGGTCTCAGGCTTTGCCAGCTCCCGGGGTTGGCTCTGCGCTCAGAACCCT--CAGAGGCGGTTTCTCC-AGGAGTAACGCGTTGACC-----------TATCCGTTCTCCCTCCTGAATTTATC-GAGGAGATGCGCTTTCACCCAGCTGG-GGGGCGGACGGG-GCCTCCCGGTTGGCTCC- i canFam3.chr19 I 162 C 0 a score=449404.000000 s hg38.chr2_GL582966v2_alt 92242 132 + 96131 TGTTTCTTGGGCCTGCTGGAAAGACTTCTCAGCAGACAGGCCTGTAGAGATCCTTAACTGGGGATGAAGAGGAACGCTGCATCCTAGTAAAGAAAGGACCCTTCATTGGCAGAGTTCCTGTGCTTTTCC--------------------------TCT s panTro4.chr2B 153205059 132 + 247518478 TGTTTCTTGGGCCTGCTGGAAAGACTTCTCAGCAGACAGGCCTGTAGAGATCCTTAACTGGGGATGAAGAGGAACGCTGCATCCTAGTAAAGAAATGACCCTTTATTGGCAGAGTTCCTGTGCTTTTCC--------------------------TCT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38412855 132 + 135000294 TGTTTCTTGGGCCTGCTGAAAAGACTTCTCAGCAGACAGGCCTGTAGAGATCCTTAACTGGGGATGAAGAGGAATGCTGCATCCTAGTAAAGAAAGGACCGTTTATTGGCAGAGTTCCTGTGCTTTTCC--------------------------TCT i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82364462 132 - 85365473 TGTTTCTTGGGCCTGCTGGAAAGACTTCTCAGCAGACAGGCCTGTAGAGATCCTTAACTGGGGATGAAGAGGAACACTGCATCCTAGTAAAGAAAGGACCCTTTATTGGCAGAGTTCTTGTGCTTTTCC--------------------------TCT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11976390 158 + 106825570 TGTTTCTTGGGCCTGCTGGAAAGACTTCTCAGCAGACAGGCCTGTAGAGATCCTTAACTGGGGATGAAGAGGAACGCTGCATCCTAGTAAAGAAAGGACCCTTTATTGGCAGAGTTCCTGTGCTTTTCCCTTCAGCAACCTGTCACAATCTCAGTTCT i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37679550 158 + 132586672 TGTTTCTTGGGCCTGCTGGAAAGACTTCTCAGCAGACAGGCCTGTAGAGATCCTTAACTGGGGATGAAGAGGAACGCTGCATCCTAGTAAAGAAAGGACCCTTTATTGGCAGAGTTCCTGTGCTTTTCCCTTCAGCAACCTGTCACAATCTCAGTTCT i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11336718 158 + 104110932 TGTTTCTTGGGCCTGCTGGAAAGACTTCTCAGCAGACAGGCCTGTAGAGATCCTTAACTGGGGATGAAGAGGAACGCTGCATCCTAGTAAAGAAAGGACCCTTTATTGGCAGAGTTCCTGTGCTTTTCCCTTCAGCAACCTGTCACAATCTCAGTTCT i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34437564 158 + 128595539 TGTTTCTTGGGCCTGCTGGAAAGACTTCTCAGCAGACAGGCCTGTAGAGATCCTTAACTGGGGATGAAGAGGAACGCTGCATCCTAGTAAAGAAAGGACCCTTTATTGGCAGAGTTCCTGTGCTTTTCCCTTCAGCAACCTGTCACAATCTCAGTTCT i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87921165 158 - 158406734 TGTTTCTTGGGCCTGCTGGAAAGACTTCTCAGCAGACAGGCTTATAGAGATCCTTAACTGGGGGTGAAGAGGAACGCCGCATTGTAGTAAAGAAAGGAACCTTTACTGGCAGAGTTCCTGTGCTTTTCCTTTCAGCAACCTGTCATAATCTCAGTTCT i calJac3.chr6 C 0 C 0 s canFam3.chr19 50677587 116 + 53741614 --TTCCTTAGGCCTGCTGGAGGGACTGCGCTG-GCACAGGGCTGTAGAGATCTGT-GCTCACGACGAAGA-----ACCGCCTCCT--TAGAACAAAGGGCCCGTGTTGGTGGCCTCCTTGCGTCCTC------------------------------- i canFam3.chr19 C 0 C 0 e mm10.chr2 49769274 0 + 182113224 C a score=465494.000000 s hg38.chr2_GL582966v2_alt 92374 131 + 96131 CCTTTCTCACTCTCCTTGAGGTGACTAAACTAAGCAGGTGGGGCCTCCTTTGTGGCCCCGTGTTTCTTCCAAACTATGAGCCAAAACCTGCTGAATCTTGCCCAGCGGGGATCGGGGGC------TTTGACTGAGAG s panTro4.chr2B 153205191 131 + 247518478 CCTCTCTCACTCTCCTTGAGGTGACTAAACTAAGCAGGTGGGGCCTCCTTTGTGGCCCCGTGTTTCTTCCAAACTATGAGCCAAAACCTGCTGAATCTTGCCCAGCGGGGATCGGGGGC------TTTGACTGAGAG i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38412987 131 + 135000294 CCTCTTTCACGCTCCTTGAGGTGACTAAAATAAGCAGGTGGGGCCTCCTTTGTGGCCCCATGTTTCTTCCAAACTATGAGCCAAAACCTGCTGAATCTTGCCCAGCGGGCATCGGGGGC------TTAGACTGAAAG i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82364594 131 - 85365473 CCTCTCTCACGCTCCTTGAGGTGACTAAACTAAGCAGGTGGGGCCTCCTTTGTGGCCCCGTGTTTCTTCCAAACTATGAGCCAAAACCTGCTGAATCTTGCCCAGCGGGGATCGGGGGC------TTTGACTGAAAG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11976548 131 + 106825570 CCTCCCTCACGCTCCTTGAGGTGACTAAACTAAGCAGGTAGGGCCTCCTTTGTGGCCCCGCATTTCTTCCAAACTATCAGCCAAAACCTGCTGAATCTTGCCCAGCGGGGATCGGGGGT------TTTGACTGAAGG i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37679708 131 + 132586672 CCTCCCTCACGCTCCTTGAGGTGACTAAACTAAGCAGGTAGGGCCTCCTTTGTGGCCCCGCATTTCTTCCAAACTATCAGCCAAAACCTGCTGAATCTTGCCCAGCGGGGATCGGGGGT------TTTGACTGAAGG i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11336876 131 + 104110932 CCTCCCTCACGCTCCTTGAGGTGACTAAACTAAGCAGGTAGGGCCTCCTTTGTGGCCCCGCATTTCTTCCAAACTATCAGCCCAAACCTGCTGAATCTTGCCCAGCGGGGATCGGGGGT------TTTGACTGAAGG i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34437722 131 + 128595539 CCTCCCTCACGCTCCTTGAGGTGACTAAACTAAGCAGGTAGGGCCTCCTTTGTGGCCCCGCATTTCTTCCAAACTATCAGCCAAAACCTGCTGAATCTTGCCCAGCGGGGATCGGGGGT------TTTGACTGAAGG i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87921323 131 - 158406734 CCTCTCTCATGCTCCTTGAGGTGACTAAACTAAGCAGGTGGGGCCTCCTTTGTAGCCCTGTGTTTCTTCCAAACTATGAGCCAAAACCTGCTGCATCTTGCCCAGTGGGGATTGGGGGC------TTTGGCTGAAAG i calJac3.chr6 C 0 C 0 s mm10.chr2 49769274 125 + 182113224 CCTTTCTCACTGCCCCTGAAGTGAATAAAGTAA---------GCTTCCATTGTGGCCCC-CGTTTCTTTCAAGCTGTCAGCCCAAACGTGCTGGAACTTGTACTGGGGGG--CGGGGGTGCAGTGTGGGACTTGAAT i mm10.chr2 C 0 C 0 s canFam3.chr19 50677703 112 + 53741614 -----------CTGCTGGAGGCGAC-----TAAGCAGGCGGGGTCTGCTCGGTGGCTTCCTCCTCCTTCCCTGCGGTTC-CCGGGACGGGCCGCATCTTGCACGTGGACGGCCGGGGGA------T--GGCTGGGGG i canFam3.chr19 C 0 I 653 a score=491046.000000 s hg38.chr2_GL582966v2_alt 92505 148 + 96131 GC---CTTCCAGGGGGAAATTGTGTCACTTTATGGTCTGCTGGAGTTATTGAGGCCGCCC-----CATTGCATT--TGTGTCTAGTGCTTGCTGTGTCAACACGGTTTGGCTGCAAACATTGCGTCAGGCCATAATCCCACAATCCAAGGTATGT-GCT s panTro4.chr2B 153205322 153 + 247518478 GC---CTTCCAGGGGGAAATTGTGTCACTTTATGGTCTGCTGGAGTTACTGAGGCCGCCCCATTGCATTGCATT--TGTGTCTAGTGCTTGCTGTGTCAACACGGTTTGGCTGCAAACATTGCGTCAGGCCATAATCCCACAATCCAAGGTATGT-GCT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38413118 137 + 135000294 GT---CTTCCAGGGGGAAATCAT-----------GTCTGCTGGAGTTACTGAGGCCGCCC-----CATTGCATT--TGTGTCTAGTGCTTGCTGTGTCAACACGGTTTGGCTGCAAACATTGCATCAGGCCATAATCCCACAATGCAAGGTATGT-GCC i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82364725 146 - 85365473 G----CTTCCA-GGGGAAATCGTGTCACTTCATGGTCTGCTGGAGTTACTGAGGCCGCCC-----CATTGCATT--TGTGTCTAGTGCCTGCTGTGTCAACACGGTTTGGCTGCAAACATTGCGTCAGGCCATAAGCCCACAATCCAAGGTATGT-GCC i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11976679 148 + 106825570 GC---CTTCCAGGGGGAAATCATGTCACTTCATGGTCTGCTGGAGTTACTGAGGCCGCCC-----CATTGCATT--TGTGTCTAGTGCTTGCTGTGTCAACACAGTTTGGCTGCAAACATTGCGTCAGGTCATAATCCCACAATCCAAGGTATGT-GCC i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37679839 148 + 132586672 GC---CTTCCAGGGGGAAATCATGTCACTTCATGGTCTGCTGGAGTTACTGAGGCCGCCC-----CATTGCATT--TGTGTCTAGTGCTTGCTGTGTCAACACAGTTTGGCTGCAAACATTGCGTCAGGTCATAATCCCACAATCCAAGGTATGT-GCC i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11337007 148 + 104110932 GC---CTTCCAGGGGGAAATCATGTCACTTCATGGTCTGCTGGAGTTACTGAGGCCGCCC-----CATTGCATT--TGTGTCTAGTGCTTGCTGTGTCAACACAGTTTGGCTGCAAACATTGCGTCAGGTCATAATCCCACAATCCAAGGTATGT-GCC i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34437853 148 + 128595539 GC---CTTCCAGGGGGAAATCATGTCACTTCATGGTCTGCTGGAGTTACTGAGGCCGCCC-----CATTGCATT--TGTGTCTAGTGCTTGCTGTGTCAACACAGTTTGGCTGCAAACATTGCGTCAGGTCATAATCCCACAATCCAAGGTATGT-GCC i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87921454 149 - 158406734 GC---CTTCCA-GGGGAAATGGGGTCACTTCATGGTCTGCTGATGTTACGGAGGCCACCC-----TGTTGCATTTGTGTGTCTAGTGCTTGCTGTGTCAACACAGTTTGGCTGCAAACATTGCGTCAGGCCATAATCCCACAATCCAAGGTATGT-GCC i calJac3.chr6 C 0 C 0 s mm10.chr2 49769399 152 + 182113224 ACCATCTTTCTAGTGGAAATCTCCTCCCTTCATGGTCTGCTGGAGTTCTTGAGGCTGGGC-----CACAGCATTTGTGTGCTGAATGCTTCCTGTGTCAACATGGGTTGGCTGCTGTCATTGCTGTAGGCCATAGTCTCCAGGT--AAGGTCTGCAGCC i mm10.chr2 C 0 C 0 e canFam3.chr19 50677815 653 + 53741614 I a score=834969.000000 s hg38.chr2_GL582966v2_alt 92653 254 + 96131 GGCACCTCTCTGCCTCCAGGCACGCAGAACGGCCATCTCATCCGACCAAGGGGATCTTATCTGACCAGGGGGATAGCGTGCGTGGAGAAATGAACCTGTGAGAAAGTG-----AAATGGCAGTTTCAGTGGTGGCATTCAGGCAGGCACTCCT-------ATTG-GTTTTCAGCTCAGAATGCA--TTTTAAATAACAACTATGACCATGCTTTTAGGTTTTTCACTTCTAATTCTGGCAATAAGCCCAAAATTTCACCAGAAAGGCCA----------- s panTro4.chr2B 153205475 254 + 247518478 GGCACCTCTCTTCCTCCAGGCATGCAGGACGGCCATCTCATCCGACCAAGGGGATCTTATCTGACCAGGGGGATAGCGTGCGTGGAGAAACGAACCTGTGAGAAAGTG-----AAATGGCAGTTTCAGTGGTGGCATTCAGGCAGGCACTCCT-------ATTG-GTTTTCAGCTCAAAATGCA--TTTTAAATAACAACTATGACCGTGCTTTTAGGTTTTTCACTTCTAATACTGACAATAAGCCCAAAATTTCACCAGAAAGGCCA----------- i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38413255 255 + 135000294 GGCACCTCTCTGCCTCCAGGCACGCAGGACGGCCATCTCAACCGACCAAGGGGATCTTATCTGACCAGGGGGATAGCATGCGTGGAGAAACGAACCTGTGAGAAAGTG-----AAATGGCAATTTCAGTGGTGGCATTCAGGCA-GCACTCCT-------ATTG-GTTTTCAGCTCAAAATGGATTTTTTAAATAACAACTATGACCATGCTTTTAGGTTTTTCACTTCTAATACTGACAATAAGCCCAAAATTTCACCAGAAAGGCCA----------- i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82364871 251 - 85365473 GGCACCTCTCTGCCTCCAGGCAC-CAGGACGGCCATCTCATCCAACCAAGGGGATCTCATCTGACC-GGGGGAGAGCGTGCGTGGAGAAACGAACCTGTGAGAAAGTG-----AAATGGCAGTTTCAGTGGTGGCATTCAGGCA-GCACTCCT-------GTTG-GTTTTCAGCTCAAAGTGGA--TTTTAAATAACAACTATGACCATGCTTTTAGGTTTTTCACTTCTAATACTGACAATAAGCCCAAAATTTCACCATAAAGGCCA----------- i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11976827 252 + 106825570 GGCACCTCCCTGCCTCCAGGCACGCAGGACAGCCATCTCATCCGAGCAAGGGGATCTCATCTGACCAGGGCGATGGCGTGCATGGAGAAACG-ACCTGGGAGAAAGTG-----AAATGGCAATTTCAGTGGTGGCATTCAGGCA-GCACTCCT-------ATTG-GTTTTCAGCTCAAAATGGA--TTTTAAATAACAACTATGACCGTGCTTTTAGGTTTTTCACTTCTAATACTGACAATAAGCCCAAAATTTCACCAGAAAGGCCA----------- i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37679987 252 + 132586672 GGCACCTCCCTGCCTCCAGGCACGCAGGACGGCCATCTCATCCGAGCAAGGGGATCTCATCTGACCAGGGCGATGGCGTGCATGGAGAAACG-ACCTGGGAGAAAGTG-----AAATGGCAATTTCAGTGGTGGCATTCAGGCA-GCACTCCT-------ATTG-GTTTTCAGCTCAAAATGGA--TTTTAAATAACAACTATGACCGTGCTTTTAGGTTTTTCACTTCTAATACTGACAATAAGCCCAAAATTTCACCAGAAAGGCCA----------- i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11337155 253 + 104110932 GGcacctccctgcctccaggcACGCAGGACGGCCATCTCATCCCAGCAAGGGGATCTCATCTGACCAGGGCGATGGCGTGCGTGGAGAAACG-ACCTGGGAGAAAGTG-----AAATGGCAATTTCAGTGGTGGCATTCAGGCA-GCACTCCT-------ATTGAGTTTTCAGCtcaaaatgga--ttttaaataaCAACTATGACCGTGCTTTTAGGTTTTTCATGTCTAATACTGACAATAAGCCCAAAATTTCACCAGAAAGGCCA----------- i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34438001 252 + 128595539 GGCACCTCCCTGCCTCCAGGCACGCAGGACGGCCATCTCATCCGAGCAAGGGGATCTCATCTGACCAGGGCGACGGCATGCGTGGAGAAACG-ACCTGGGAGAAAGTG-----AAATGGCAATTTCAGTGGTGGCATTCAGGCA-GCACTCCT-------ATTG-GTTTTCAGCTCAAAATGGA--TTTTAAATAACAACTATGACCGTGCTTTTAGGTTTTTCACTCCTAATACTGACAATAAGCCCAAAATTTCACCAGAAAGGCCA----------- i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87921603 252 - 158406734 GGCACCTCCCTGCCTCTGGGCACGCTGGACGGCCATCTAATCCGAGCAGGGGGATCTCATCTGACCAGGGGAATAGTGTGCTTGGAGAAATGAACCTGTGAGAGAGTG-----AAATGGCGATGTCAATGGTGGCTTTCAGGCA-GCACTCC--------AACG-GTTTTCAGCTCAAAATGGA--TATTCAATAACAACTGTGACCATGCTTTTAGGTTTTTCACTTCTAATATTGACAAAAAGCCCAAAATTTCACTAGAAAGGCCA----------- i calJac3.chr6 C 0 C 0 s mm10.chr2 49769551 204 + 182113224 AGCACCTCCCTGCCTGCAGGTACACAGGAAGACCA------------------ATCCCTTCTGCCCAGTGGGATGGTGCGTTTGAAGGAACAAACCCTC----AGGTG-----AAGTAG-GATCTCGGTGCTGCTCTCCAAA-A-GCCTTCCT--------TTG-GTTTTCAGCTCACAGTAGA--TTGTAAATGACTGC-ATCATTCTGCACTCAG---------------------CAGGAAGGACAAACTCTCA--AGAAAGGTCA----------- i mm10.chr2 C 0 I 161 s canFam3.chr19 50678468 269 + 53741614 GGCACCTCCCCGGCTGCGGGCACCC----CGAGGACCTCCTCCGAACCGGTGACCCGCAGCTGATC-CTGAGGCCGCGGGCTTGG-GAGAGGAAGCTGGGGGGGGGGGGGCGCGAATGGGGATCCGAACGGTGGTGTTTGGAAA-GCATCCCCCCGGCTGACTG-GGTTTCAGCTCAAAATGAA---TTTAGAGGACCACTAGGAGCAGGCTCTGAGAGCTTTCATTTCTTGTCCTAATCATAAGCACAGGATCTCACCAGAAAGGCTGCACATGAAACC i canFam3.chr19 I 653 C 0 a score=51885.000000 s hg38.chr2_GL582966v2_alt 92907 13 + 96131 TGTTCTTCCCAAA s panTro4.chr2B 153205729 13 + 247518478 TGTTCTTCCCAAA i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38413510 13 + 135000294 TGTTCTTCCCAAA i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82365122 13 - 85365473 TGTTCTTCCCAAA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11977079 13 + 106825570 TGTTCTTCCCAAA i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37680239 13 + 132586672 TGTTCTTCCCAAA i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11337408 13 + 104110932 TGTTCTTCCCAAA i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34438253 13 + 128595539 TGTTCTTCCCAAA i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87921855 13 - 158406734 TATTCTTCCCAAA i calJac3.chr6 C 0 C 0 s canFam3.chr19 50678737 13 + 53741614 TGCTCTTCCCAGA i canFam3.chr19 C 0 I 408 e mm10.chr2 49769755 161 + 182113224 I a score=24752.000000 s hg38.chr2_GL582966v2_alt 92920 9 + 96131 GACA--TCTTA s panTro4.chr2B 153205742 9 + 247518478 GACA--TCTTA i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38413523 9 + 135000294 GACA--TCTTA i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82365135 9 - 85365473 GGCA--TCTTA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11977092 9 + 106825570 GACA--TCTTA i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37680252 9 + 132586672 GACA--TCTTA i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11337421 9 + 104110932 GACA--TCTTA i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34438266 9 + 128595539 GACA--TCTTA i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87921868 11 - 158406734 GATACCTCTTA i calJac3.chr6 C 0 C 0 e canFam3.chr19 50678750 408 + 53741614 I e mm10.chr2 49769755 161 + 182113224 I a score=398147.000000 s hg38.chr2_GL582966v2_alt 92929 120 + 96131 CTCTCTGTGACTTCTAAAAATGACAGAAATATC-ACCCTCTAGGGTTGTTTAAGCCCTTCTTAGTTGTGTAGCTTTGCCACTGTGGGTGATTA-------------------------TACCAAATGAGTTCTGTGAATATTTTTT s panTro4.chr2B 153205751 120 + 247518478 CTCTCTGTGACTTCTAAAAATGACAGAAATATC-ACCCTCTAGGGTTGTTTAAGCCCTTCTTAGTTGTGTAGCTTTGCCACTGTGGGTGATTA-------------------------TACCAAATGAGTTCTGTGAATATTTTTT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38413532 120 + 135000294 CTCTCTGTGACTTCTAAAAATCACAGAAATATC-ACCCTCTAGGGTTGTTTAAGCCCTTCTTAGTTGTGTAGCTTTGCCACTGTAGGTGATTA-------------------------TACCAAATGAGTTCTGTGAATATTTTTT i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82365144 120 - 85365473 CTCTGTGTGACTTCTAAAAATGACAGGAATATC-ACCCTCTAGGGTTGTTTAAGCCCTTCTTAGTTGTGTAGCTTTGCCACTGTGGATGATTA-------------------------TACCAAATGAGTTCTGTGAATATTTTTT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11977101 120 + 106825570 CTCTCTGTGACTTCTAAAAATGACAGGAATATC-ACCCTCTAGGGTTGTTTAAGCCCTTCTTAGTTTTGTAGCTTTGCCGTTGTGGGAGATTA-------------------------TACCAAATGAGTTCTCTGAATATTTTTT i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37680261 120 + 132586672 CTCTCTGTGACTTCTAAAAATGACAGGAATATC-ACCCTCTAGGGTTGTTTAAGCCCTTCTTAGTTTTGTAGCTTTGCCGTTGTGGGAGATTA-------------------------TACCAAATGAGTTCTCTGAATATTTTTT i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11337430 120 + 104110932 CTCTCTGTGACTTCTAAAAATGACAGGAATATC-ACCCTCTAGGGTTGTTTAAGCCCTTCTTAGTTTTGTAACTTTGCCGTTGTGGGAGATTA-------------------------TACCAAATGAgttctctgaatatttttt i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34438275 120 + 128595539 CTCTCTGTGACTTCTAAAAATGACAGGAATATC-ACCCTCTAGGGTTGTTTAAGCCCTTCTTAGTTTTGTAGCTTTGCCGTTGTGGGAGATTA-------------------------TACCAAATGAGTTCTCTGAATATTTTTT i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87921879 119 - 158406734 CTCTCTGTGACTTCTAAAAATGACAAGAATATC-ACCGTCTAGGGTTGTTTAAGCCCTTCTTAGTTGAGTAGCTTTGCCATTGTGGGAGA-TA-------------------------CACCAAATGAGTTCTCTGAATAttcttt i calJac3.chr6 C 0 C 0 s canFam3.chr19 50679158 146 + 53741614 CTCCCTTTGACCTCTAAAACTGGCATGAATATTAACCATATAATGTGACTGAAGCCATTTTTAATCGAGCAGCTTCATACCTGTGAACACTTACGGCCTTGGAGCGAGAGATGGTAACTACCAAGTGAGCTGTCGGGGTATTTGTT i canFam3.chr19 I 408 I 6 e mm10.chr2 49769755 161 + 182113224 I a score=439454.000000 s hg38.chr2_GL582966v2_alt 93049 162 + 96131 CTTGTCAGTGAAGAGGTGGttttgtttttg-tttttg------tttttttgagactgagtctcactctgtcacccaggctggagtgcagcagcatgatctcggctcactgcaacctctgcttcccaggttcaagcgattctcctgtttcagcctcccaagtagctggga s panTro4.chr2B 153205871 162 + 247518478 CTTGTCAGTGAAGAGGTGGttttgtttttg-tttttg------tttttttgagactgagtctcactctgtcacccaggctggagtgcagcggcatgatctcggctcactgcaacctctgcttcccaggttcaagcgattctcctgtttcagcctcccaagtagctggga i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38413652 150 + 135000294 CTTGTCAGTGAAGAGGTGtttttgtttttg-------------------tgagactgagtctcactctgtcacccaggctggagtgcagtggcatgatcttggctcaccgcaacctctgcttcccatgttcaagcgattctcctgtctcagcctcccaagtagctggga i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82365264 161 - 85365473 CTTGTCAGTAAAGAAGTGGttttg-ttttg-tttttg------tttttttgagactgagtctcactctgtcacccaggctggagtgcagtggcatgatctcggctcactgcaacctctgcttcccaggttcaagcaattctcctgtctcagcctcccaagtagctggga i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11977221 168 + 106825570 CTTGTCAGTGAAGAGGTGGttttgtttttg-tttttgttttcatttttttgagactgagtctcactctgttgcccagactggagtgcagtggcatgatctcggctcactgcaacctctgcctctgaggttcaaatgattctcctgcctcagcctcccaagtagctggga i rheMac3.chr12 C 0 M 214 s macFas5.chr12 37680381 168 + 132586672 CTTGTCAGTGAAGAGGTGGttttgtttttg-tttttgttttcatttttttgagactgagtctcactctgttgcccagactggagtgcagtggcatgatctcggctcactgcaacctctgcctctgaggttcaaatgattctcctgcctcagcctcccaagtagctggga i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11337550 168 + 104110932 cttgtcagtgaagaggtggttttgtttttgctttttgttttcatttttttgagactgagtctcactctgttgcccagactggagtgcagtggcatgatctcggctcactgcaacctctgcctctgaggttc-aatgattctcctgcctcagcctcccaagtagctggga i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34438395 168 + 128595539 CTTGTCAGTGAAGAGGTGGttttgtttttg-tttttgttttcatttttttgagactgagtctcactctgttgcccagactggagtgcagtggcatgatctcggctcactgcaacctctgcctctgaggttcaaatgattctcctgcctcagcctcccaagtagctggga i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87921998 138 - 158406734 ct-----------------------ttttc-ttttt-------ttttattgagactgagtctcactctgtcactcaggttggagtgcagtggcttgatcttggctcacttcagcctctgcctcccaggttcaagtgattcttctgcctcagtgtcccgagtagttgaga i calJac3.chr6 C 0 C 0 e canFam3.chr19 50679304 6 + 53741614 I e mm10.chr2 49769755 161 + 182113224 I a score=340695.000000 s hg38.chr2_GL582966v2_alt 93211 151 + 96131 ctacacatacaagccaccatgccgggctaatttttgtatttttagtagagatggggtttcaccatgttggctgggctggtttcaaactcctgacctcgagtgatccacccgcgttggcctcccaaaccaaagtgctgggattataggcatc s panTro4.chr2B 153206033 151 + 247518478 ctacacatacatgccaccatgccaggctaatttttgtatttttagtagagatggggtttcaccatgttggctgggctggtttcaaactcctgacctcgagtgatccacccgcgttggcctcccaaaccaaagtgctgggattataggcatc i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38413802 151 + 135000294 ctacacgtacatgccaccatgccgggctaatttttgtatttttagtagagatggggtttcaccatgttggctgggctggttccaaactcctgacctcaagtgattcacccgccttggcctcccaaaccaaagtgctgggattataggcatc i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82365425 150 - 85365473 ctacacatacatgccaccatgccgggctaatttttgtatttttagtagagatggggtttcatcatgttggctgggctggtttcaaactcctgacctcaagtgatccacccaccttggcttcccaaacc-aagtgctgggattataggcatc i nomLeu3.chr20 C 0 C 0 s macFas5.chr12 37680549 151 + 132586672 ctacatgtacatgccaccatgccgcactaatttttgtatttttagtagagttggggtttcaccgtgttggctgggctggttttgaactcctgacttcaagtgatccacgtgctgtggcctcccaaaccaaagtgctgggattataggcatg i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11337718 151 + 104110932 ctacatgtacatgccaccatgccgcactaatttttgtatttttagtagagttggggtttcaccgtgttggctgggctggttttgaactcctgacttcaagtgatccacgtgctgtggcctcccaaaccaaagtgctgggattataggcatg i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34438563 151 + 128595539 ctacatgtacatgccaccatgccacactaatttttgtatttttagtagagttggggtttcactgtgttggctgggctggttttgaactcctgacttcaagtgatccacgtgctgtggcctcccaaaccaaagtgctgggattataggcatg i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87922136 151 - 158406734 ctacaggcacatgccaccatgcttggctaatttttgtatttttagtagagttggggtttcaccatgttggccaggctggtctccaattcttgacctcaagtgatccacctgctttggcctcccaaaccaaagtggtgggattacaagcatg i calJac3.chr6 C 0 C 0 e canFam3.chr19 50679304 6 + 53741614 I e mm10.chr2 49769755 161 + 182113224 I e rheMac3.chr12 11977389 214 + 106825570 M a score=52606.000000 s hg38.chr2_GL582966v2_alt 93362 17 + 96131 agccactgcacttggcc s panTro4.chr2B 153206184 17 + 247518478 agccactgcacttggcc i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38413953 17 + 135000294 agccactgcacttggcc i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82365575 17 - 85365473 agccactgcacttggcc i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11977606 17 + 106825570 AGCCACTGCACTTGACC i rheMac3.chr12 M 214 C 0 s macFas5.chr12 37680700 17 + 132586672 agccactgcacttgacc i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11337869 17 + 104110932 agccactgcacttgacc i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34438714 17 + 128595539 agccactgcacttgacc i chlSab2.chr10 C 0 I 111 s calJac3.chr6 87922287 17 - 158406734 agccactgtgcccggcc i calJac3.chr6 C 0 C 0 e canFam3.chr19 50679304 6 + 53741614 I e mm10.chr2 49769755 161 + 182113224 I a score=3276.000000 s hg38.chr2_GL582966v2_alt 93379 1 + 96131 A s panTro4.chr2B 153206201 1 + 247518478 A i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38413970 1 + 135000294 A i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82365592 1 - 85365473 A i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11977623 1 + 106825570 A i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37680717 1 + 132586672 A i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11337886 1 + 104110932 a i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34438842 1 + 128595539 A i chlSab2.chr10 I 111 C 0 s calJac3.chr6 87922304 1 - 158406734 A i calJac3.chr6 C 0 C 0 e canFam3.chr19 50679304 6 + 53741614 I e mm10.chr2 49769755 161 + 182113224 I a score=60276.000000 s hg38.chr2_GL582966v2_alt 93380 18 + 96131 AGAGGTGG-TATTTTTAAA s panTro4.chr2B 153206202 18 + 247518478 AGAGGTGG-TATTTTTAAA i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38413971 18 + 135000294 AGAGGTGG-TATTTTTAAA i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82365593 18 - 85365473 AGAGGTGG-TATTTTTTAA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11977624 18 + 106825570 AGAGGTGG-TATTTTTAAA i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37680718 18 + 132586672 AGAGGTGG-TATTTTTAAA i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11337887 18 + 104110932 aggggtgg-tatttttaaa i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34438843 18 + 128595539 AGAGGTGG-TATTTTTAAA i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87922305 18 - 158406734 AGAGGTGA-TCTTTTTAAA i calJac3.chr6 C 0 C 0 s mm10.chr2 49769916 19 + 182113224 AGAAATGGCTGTTCTTAGA i mm10.chr2 I 161 C 0 e canFam3.chr19 50679304 6 + 53741614 I a score=2265613.000000 s hg38.chr2_GL582966v2_alt 93398 729 + 96131 ---AAGAATGTGTtgttctg---tttttttttttctattcagtttctgttccgtatttcttctCCCTTTTTCACCCACTTTGC-TTGTATCTGCTTTAATAACCCCTTTCTAGACTGAGAATTTTTCTATTTATATGTAACTTACATCCTGCTGATTTATGCAAAATATGTGAGGTTGCTTACAATATTATAACATATAAATCAGAAGAGTGAAG--AAAAAAA-------AGAGCATGGTAGCGGGAATC----TGAGATA-T-TACCACAGTTGAGCACCAAATGTTGATATAAGCCTTCTAGAGGCAAAACAGAAAGCATAATGCATAATGTGTCAGGTTACAGAGGGC---------------ttttttttttttt----------------------------------------------------------ttttttAATCAAAAGAGAAGTTGGGCTTTTCTTAGTGGCTGTTGTA-TTTCCAGTACCAGGTAATT-CCATGTATTTCTTAAGGATAAGGCTCTACCTCCCTC--TTGTCATCCCTGTCCCCATCCCCTAGAGTACCATGAGCTCTGCACAAAACCTATAGTA-AGATCTCAGA---GCTAGGGCCTCCAGCCGGTGACAGGAAACAGAGCCTTTCAGTGTCTT-CTGAAAGTTGAGCTTACTGATGTTGGGTGCAGGCTGACAGAGG--------CCATTCAGG-------------------CTGGTCT--AGACGTTCATCCTGGAGATGCGCCCAGCACCA----GCCGAACTTCTGGTGGGAAGTGGAATGAAATGGACAGGGGTGGTCTTTTGGAGAATCTT-ATTATCCGATGGAGACGAAG s panTro4.chr2B 153206220 730 + 247518478 ---AAGAATGTGTTGTTCTGTTTTTTTTTTTTTTCTATTCAGTTTCTGTTCCGTATTTCTTCTCCCTTTTTCACCCACTTTGC-TTTTATCTGCTTTTATAACCCCTTTCTAGACTGAGAATTTTTCTATTTATATGTAACATACATCCTGCTGATTTATGCAAAATATGTGAGGTTGCTTACAATATTATAACATATAAATCAGAAGAGTGAAG--AAAAAAA-------AGAGCATGGTAGCGGGAATC----TGAGATA-T-TACCACAGTTGAGCACCAAATGTTGATATAAGCCTTCTAGAGGCAAAACAGAAAGCATAATGCATAATGTGTCAGGTTACAGAGGGC-----------------TTTTTTTTTTT----------------------------------------------------------TTTTTAAATCAAAAGAGAAGCTGGGCTTTTCTTAGTGGCTGTTGTA-TTTCCAGTACCAGGTAATT-CCATGTATTTCTTAAGGATAAGTCTCTACCTCCCTC--TTGTCATCCCTGTCCCCATCCCCTAGAGTACCATGAGCTCTGCACAAAACCTATAGTA-AGATCTCAGA---GCTAGGGCCTCCAGCCGGTGACAGGAAGCAGAGCCTTTCAGTGTCTT-CTGAAAGTTGAGTTTACTGATGTTGGGTGCAGGCTGACAGAGG--------CCACTCAGG-------------------CTGGTCT--AGACGTTCATCCTGGAGATGCGCCCAGCACCA----GCCGAACCTCTGGTGGGAAATGGAATGAAATGGACAGGGGTGGTCTTTTGGAGAATCTT-ATTATCCAATGGAGACGAAG i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38413989 735 + 135000294 ---AATATTG---TGTTCTGTTTTTTTTTTTTTTCTACTCAGTTTCTGTTCTTTATTTCTTCTCCCTTTTTCACCCACTTTGC-TTTTATCTGCTTTTATAACCCCTTTCTAGACTGAGAATTTTTCTATTTATATGTAACTTACATCCTGCTGATTTATACAAAATATGTGAGGTTGCTTACAATATTATAACATATAAATCAGGAGAGTGAAG-AAAAAAAA-------AGAGCATGGTAGCGGGAATC----TGAGATA-T-TACCACAGTTGAGCACCAAATGTTGATATAAGCCTTCTAGAGGCAAAACAGAAAGCATAATGCATAATGTGTCAGGTTACAGAGGGC----Gt--------tttttttttttttt----------------------------------------------------------tttttAAATCAAAAGAGAAGTTGGGCTTTTCTTAGTGGCTGTCGTA-TTTCCAGTACCAGGTAATT-CCATGTATTTCTTAAGGATGAGGCTCTACCTCCCTCTTTTGTCATCCCTGTCCCCATCCCCTAGACTACCATGAGCTCTGCACAAAACCCATAGCA-AGATCTCAGA---GCTAGGGCCTCCAGCTGGTGACAGGAAGCAGAGCCTTTCAGTGTCTT-CTGAAAGTTGAGCTTACTGGTGTTGGGTACAGGCTGACAGAGG--------CCACTCAGG-------------------CTGGTCT--AGACGTTCATCCTGGAGATGCACCTAGCACCA----GCCGAACCTCTGGTGGGAAGTGGAATGAAATGGAAGGGGGTAGTCTTTTGGAGAATCTT-ATTATCCGACAGAAACGAAG i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82365611 740 - 85365473 ---AAGAGTGTGTTGTTCTG--TTTTTTTTTCTCCTACTCAGTTTCCGTTCTGTATTTCTTCTCCCTTTTTCACCCACTTTGC-TTTTATCTACTTTTATAACCCCTTTCTAGACTGAGAATTTTTCTATTTATATGTAACTTACATTCTGCCGATTTATACAAAATATGTAAGGTTGCTTACAATATTATAACATATAAATCAGGAGAGTGAAG-AAAAAAAA-------GGAGCATGGTAGCAGGAATC----TGAGATA-T-TACCACAGTTGAGCACCAAATGTTGATATAAGCCTTCTGGAGGCAAAACAGAAAGCATAATGCGTAATGTGTCAGGTTATAGAGGGCtttttt--------tttttttttttttt----------------------------------------------------------tttttAAATCAAAAGAGAAGGTGGGCTTTTCTTAGTGGCTGTCTTA-TTTCCAGTACCAGGTAATT-CCATGTATTTCTTAAGGATCAGGCTCTACCTCCCTCTTTTGTCATCCCCGTCCCCATCCCCTAGAGTACCAAGAGCTGTGCACAAAACCCATAGCA-AGATCTCAGA---GCTAGGGCCTCCAGCTGGTGACAGGAAGCAGAGCCTTTCAGTGTCTT-CTGAAAGTTGAGCTTACTGGTGTTGGGTATAGGCTGACAGAGG--------CCACTCAGG-------------------CTGGTCT--AGACGTTCATCCTGCAGATGCACCCAGCACCA----GCCAAACCTCTGGTGGGAAGTGGAGTGAAATGGAAGGGGGTGGTCTTTTGGAGAATCTT-ATTATCTGATGGAGACGAAG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11977642 722 + 106825570 ---AAGAATG---TGTGTGG---TTTTTTTTTTTCTACTCAGTTTCTGTTCTGTATTTCGTCTCCCTTTTT--CTCGCTTTGCTTTTTTTCTACTTTTATAACCCCTTTCTAGACAGAGAATTTTTCTATTTATATGTAACTTACATCCTGTTGGTTTATACAAAATATGTGAGGTTGTTTACAATATTATAACATATAAATCAGGAGAGTGAAGAAAAAAAAA-------AGAGCATGGTAGCGGGAATC----TGAGATA-T-TACCACAGTTGGGTACCAAATGTTGATATAAGCCTTCTAGAGGCAAAACAGAAAGC----------ATGTGTCAGGTTACGGAGGGC----TT--------TTTCTTTCTTTTTT----------------------------------------------------------TTTTTTAATCAAAAGAGAATTTGGGCTTTTCTTAGTGGCAGTTGTA-TTTCCAGTACCAGGTAATT-CCATGTTTTTCTCAAGGATAAGGCTCTACCTCCCTCTTTTGTCATCCCTGTCCCCATCCCCTAGAGTACCATAAGCTCTGCACAAAACCCATAGCA-GGGTCTCAGA---GCTAGGGCCTCCAGCTGGTGACAGGAAGCAGAGCCTTTCAGTGTCTT-CTGAAAGTTGAGCTTACTGGTGTTGGGTACAGGCTGACAGAGG--------CCACTCAGG-------------------CTGGTCT--AGACGTTCATCCTGGAGATGTGCCCAGCACCA----GCCGAACCTCTGGTGGGAAGTGGAATAAAATGGAAGGGGGTGGTCTTTTGGAGAATCTT-ATTATCCGATGGAGACGAAG i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37680736 721 + 132586672 ---AAGAATG---TGTGTGG---TTTTTTTTTTTCTACTCAGTTTCTGTTCTGTATTTCGTCTCCCTTTTT--CTCGCTTTGCTTTTTTTCTACTTTTATAACCCCTTTCTAGACAGAGAATTTTTCTATTTATATGTAACTTACATCCTGTTGGTTTATACAAAATATGTGAGGTTGTTTACAATATTATAACATATAAATCAGGAGAGTGAAGAAAAAAAAA-------AGAGCATGGTAGCGGGAATC----TGAGATA-T-TACCACCGTTGGGTACCAAATGTTGATATAAGCCTTCTAGAGGCAAAACAGAAAGC----------ATGTGTCAGGTTACGGAGGGC----TT--------TTTCTTTC-TTTTT----------------------------------------------------------TTTTTTAATCAAAAGAGAATTTGGGCTTTTCTTAGTGGCAGTTGTA-TTTCCAGTACCAGGTAATT-CCATGTTTTTCTCAAGGATAAGGCTCTATCTCCCTCTTTTGTCATCCCTGTCCCCATCCCCTAGAGTACCATAAGCTCTGCACAAAACCCATAGCA-GGGTCTCAGA---GCTAGCGCCTCCAGCTGGTGACAGGAAGCAGAGCCTTTCAGTGTCTT-CTGAAAGTTGAGCTTACTGGTGTTGGGTACAGGCTGACAGAGG--------CCACTCAGG-------------------CTGGTCT--AGACGTTCATCCTGGAGATGTGCCCAGCACCA----GCCGAACCTCTGGTGGGAAGTGGAATAAAATGGAAGGGGGTGGTCTTTTGGAGAATCTT-ATTATCCGATGGAGACGAAG i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11337905 729 + 104110932 ---aagaatg---tgtgtgg----tttttttgttctactcagtttctgttctgtatttcgtctcccttttt--ctcactttgctttttttctacttttataacCCCTTTCTAGACAgagaatttttctatttatatgtaaCTTACATCCTGTTGGTTTATACAAAATATGTGAGGTTGTTTACAATATTATAACATATAAATCAGgagagtgaaggaaaaaaaa-------agagcatggtaGCGGGAATC----TGAGATA-T-TACCACAGTTGGGTACCAAATGTTGATATAAGCCTTCTAGAGGCAAAACAGAAAGC----------ATGTGTCAGGTTACAGAGggc----tttatctttctttctttctttctt----------------------------------------------------------tcttttaatcaaaAGAGAATTTGGGCTTTTCTTAGTGGCGGTTGTA-TTTCCAGTACCAGGTAATT-CCATGTTTTTCTCAAGGATAAGGCTCTACCTCCCTCTTTTGTCATCCCTGTCCCCATCCCCTAGAGTACCATGAGCTCTGCACAAAACCCATAGCA-GGGTCTCAGA---GCTAGCGCCTCCAGCTGGTGACAGGAAGCAGAGCCTTTCAGTGTCTT-CTGAAAGTTGAGCTTACTGGTGTTGGGTACAGGCTGACAGAGG--------Ccactcagg-------------------ctggtct--agacGTTCATCCTGGAGATGTGCCCAGCACCA----GCCGAACCTCTGGTGGGAAGTGGAATAAAATAGAAGGGGGTGGTCTTTTGGAGAATCTT-ATTATCCGATGGAGACGAAG i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34438861 787 + 128595539 ---AAGAATG---TGTGTGG----TTTTTTTTTTCTACTCAGTTTCTGTTCTGTATTTCGTCTCCCTTTTT--CTCGCTTTGCTTTTTTTCTACTTTTATAACCCCTTTCTAGACAGAGAATTTTTCTATTTATATGTAACTTACATCCTGTTGGTTTATACAAAATATGTGAGGTTGTTTACAATATTATAACATATAAATCAGGAGAGTGAAG-AAAAAAAA-------AGAGCATGGTAGCGGGAATC----TGAGATA-T-TACCACAGTTGGGTACCAAATGTTGATATAAGCCTTCTAGAGGCAAAACACAAAGC----------GTGTGTCAGGTTACGGAGGGC----tctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttTTTAATCAAAAGAGAATTTGGGCTTTTCTTAGTGGCGGTTGTATTTTCCAGTACCAGATAATT-CCATGTTTTTCTCAAGGATAAGGCTCTACCTCCCTCTTTTGTCATCCCTGTCCCCATCCCCTAGAGTACCATGAGCTCTGCACAAAACCCATAGCA-AGGTCTCAGA---GCTAGGGCCTCCAGCTGGTGACAGAAAGCAGAGCCTTTCAGTGTCTT-CTGAAAGTTGAGCTTACTGGTGTTGGGTACAGGCTGACAGAGG--------CCACTCAGA-------------------CTGGTCT--AGACGTTCATCCTGGAGATGTGCCCAGCACCA----GCCGAACCTCTGGTGGGAAGTGGAATAAAATGGAAGGCGGTGGTCTTTTGGAGAATCTT-ATTATCCGATGGAGACGAAG i chlSab2.chr10 C 0 I 199 s calJac3.chr6 87922323 722 - 158406734 ---AAGAATT-GTTGTTATG--TTTTTTTATTTTCTACTCAGTTTCTGTTCTGTATTTCTTCTCCTTTTTC-ACCTACTTTGC-TTTTATCTACTTTTATAACCCCTTTGTAGACTGCGAATTTTTTCATTTATAAGTAACTTTCATCCTGCTGATTGATACAAAATATGTGAGGTCGCTTACAATATTATAGCATATAAATCAGGAGAGTGAAG-GAGAAAAA-------AGAGCTTGGTAGCAGGAATC----TGAGACATT-TACCACAGTTGAGCACCAAATTTTGATATAAGCCTTCTAGAAGCAAAACAGAAAGCATA-------ATGTGTCAGGTTATGGAAGCT------------------TGTTTTTTTT----------------------------------------------------------TTTTAAAATCAAAAAAGAAGTTGGGCTTTTCTTAGTGGCTGTCATA-TTTCCAGTACTAGGTAATT-CCTTGTATTTTTCAAGAATGAGGTTCTGCCTCCCTCTTTTGTCATCCCTGTCCCCATCCCCTAGAATACAAGGAGCTCTGTGCAAAACCCATAGCA-AGATCTCAGA---GCTAGGGCCTCAAGCTGGTGACGGGAAGCAGAGCCTTTCAGTGTCTT-CTGAAAGCTTAGCTTACTGCCATTGGGTACAGGCTGACAGAGG--------CCACTCAGG-------------------CTGGTCT--AGATGTTCATCCTGGAGATGTGCCCAGCACCA----GCCGAACCTCTGGTGAGAAGTGGAATGAAATGGAAGGGGGTGCTTTTTTGGAGAATCTC-ATTATTCCTTGGAGATGGAG i calJac3.chr6 C 0 C 0 s mm10.chr2 49769935 637 + 182113224 ---AAGCACGAACTGTCCCC----------TCACCTGCCAGGTTTCTCTTCTG--TTCCATGCTCCTCTTT-----------C-CTTTTTCTG----------------------------------TATTCATGCATAATTTATGTTGTGTTTATTTACACAAAATATGTAGTGCTGCTTCCACTAT-------TCTGAATGAGGAGGCTGTAG-AGAAACAACTTGGAGACAGTACTGTGGCAGGGCTG----TGAGGCC-T-CAC----------------AGGTGGACAGAGG----CTGGAGGC-AAACAGGAAGTACA-------GTGTGTCAGGTTATGGAG-----------------------------TC----------------------------------------------------------TTGTTCAAACTCGGGAGCAGATGAGTTTTACTTTGGCTCCATCATA-TTTCCTGT--TGTGCCACT-TCCTTTAGCTTCCTAGGACAAGGCTGTGCCTGCCCATTGGG---TTCCTTCCTTCAG-CCCGAGGGTTCCAGGACCTCTGCCAGAAACCCACAGGGCAGATTACAGATGGGTCAGGGCCCCATGATGCTGCCAGG-GGTTGACTCTTTTGCTATGT---TGAGTGTCAAGCTTACAAGAGTT-AGTGGAAGATGACTCAGGGCTGGTTTCTAGTCAGG-------------------AGAGGTCGAAGACTCCCACCCTGGGGACCTGCCCAAGGTCAGATGGACAGACCTCTACTGA------GAGTAAACTGGAAGCGGGTGCTGTACTG--AAATCTTCATGACACCATTGGTGTGGAA i mm10.chr2 C 0 C 0 s canFam3.chr19 50679310 721 + 53741614 AGGGAGGAGG---TGTATTG---CCTCTTTCTTCCTACACAGTTTCGGTTCTTCTTTTCCTCTTCTCCCCCCACCCACTTTGC-TCTTACCTACTTTTCTAAACCCTTTCTACACCCTGAATTTTTCTATTTATCTATAATGTACATCCTTCT-ATTTATCTAAAATACGTGAGGCTGCTTACGATACTATAACACAGGGATCGGGAGAGAGAAG-AGAAAAACCTTGAGGGGAGCATCGGAGCGGGAATCAGGTGGGGGTG-TCTGCCACAGCTGAGCCCTGAACGGGGATCTGGG------------ATGACGGCACG-----------GTGCGTCAGGTCGTGCAGCTC---------------------------C----------------------------------------------------------TTTTAAAATCCGACGGGCACTTGGGTTTCTCTTAGCGTGTGTCGTA-TTTCC-GTGCCGGGCATTTGCCACGT--TCCCCGAGGATGGGGCTCTACATCCTGCTGTTgcccccgccgcgccccaccc-----gcccggcgggcTCTGCACCGAACCTGTAGGA-AGACCACAGACTGGCCAGGGCTTCCCGCTGGTGG-GGGAAGCTGGACCTTTCGGTTCCTTCCTGAGAGGGGCTGTTCCTGGAGTTGGTCCGAAGGCGACAGAGG--------CCACTCGGGGCTGACCTCTGAGCCAGGACTCGCCC--AGACTTCTGTCCTGGAGACCTGAGCATGACGG----AATGGAGCTCCGGTGGGAAGCGGAGTGAAGCCAAAGGGATTG--CCCTCGAGTAACTTC-ATCTGCCCAAGGAGGTGCAA i canFam3.chr19 I 6 C 0 a score=1337898.000000 s hg38.chr2_GL582966v2_alt 94127 426 + 96131 CATACCTTTGGGAACTGGGAACCTCTTTCTACAGAGAGTCTGGGTTAGGGGCCTTGTTGCACCTGCTTGCTATCCTAAGTGCAGGCAAATGAGAAATGTTTTAATTTCCCCCTAGGAATGAGAAAATGCATTATGTTACTCTGAATATCCATAGCCTCAACAGATACCGACTTATGGAAGAGAATGTTGAGACT--GTCAGGACTAAATACTTAAAGCAAAATCAGGAAATCGGAGGTtgtgctgttcatg-----tgccactatccacatgtgtcttttgagctctcaaaatgtggctaagtccaaattgagatgggctgaaagtgtaaaatatacaccagattgcaaacac-tattgtgtg-aaaaaaaaa------atct--cagtagtaatattgtaatgtaaacgatctcaacatgtaataccagttacatgttgaa---a s panTro4.chr2B 153206950 425 + 247518478 CATACCTTTGGGAACTGGGAACCTCTTTCTACAGAGAGTCTGGGTTAGGGGCCCTGTTGCACCTGCTTGCTATCCTAAGTGCAGGCAAATGAGAAATGTTTTAATTTCCCCCTAGGAATGAGAAAATGCATTATGTTACTCTGAATATCCATAGCCTCAACAGATACCGACTTATGGAATAGAATGTTGAGACT--GTCAGGACTAAATACTTAAAGCAAAATCAGGAAATAGGAGGTtgtgctgttcatg-----tgccactatccacatgtgtcttttgagctctcaaaatgtggctaagtccaaattgagatgggctgaaagtgtaaaatatacaccagattgcaaacac-tattgtgtg--aaaaaaaa------atct--cagtagtaatattgtaatgtaaacaatctcaacatgtaataccagttacatgttgaa---a i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38414724 426 + 135000294 CATACCTTTGGGAACTGGGAACCTCTTTCTACAGAGAGCCTGGGTTAGGGGCCCTGTTGCACCTGCTTGCTATCCTAAGTGCAGGCAAATGAGAAATGTTTTAATTCCCCCCTAGGAATGAGAAAATGCATTATGTTACTTTGAATATCCATAGCCTCAACAGATACTGTCTTATGGAAGAGAATGTTGAGACT--GTCAAGACTAAATACTTAAAGCAAAATGAGGAAATAGGAGGTtgtgctgttcatg-----tgccactatccacatgtgtcttttgagctttcaaaatgtggctaagtccaaattgagatgggctgaaagtgtaaaatatacaccagattgcaaacac-tattgtgtg-aaaaaaaaa------atct--cagtagtaatattgtaatgtaaacgatctcaacatgtaataccagttacatgttgaa---a i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82366351 427 - 85365473 CATATCTTTGGGAACTGGGAACCTCTTTCTACAGAGAGCCTGGGTTAGGGGCCCCATTGCACCTGCTTGCTATCCTAAGTGCAGGCAAATGAGAAATGTTTTAATTTCCCCCTAGGAATGAGAAAATGCATTATGTTACTCTGAATATCCATAGCCTCAACAGATACCGACTTATGGAAGAGAATGTTGAGACT--GTTAGGACTAAATACTTAAAGCAAGATCAGGAAATAGGAGGTtgtgctgttcacg-----tgccactatccacatgtgtcttttgagatctcaaaatatggctaagtccaaattgagatgggctgaaagtgtaaaatatacaccagattgcaaacac-tattgtgtaaaaaaaaaaa------atct--cagtagtaatattgtaatgtaaacgctctcaacatgtaataccagttacatgttgaa---a i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11978364 426 + 106825570 CATATCTTTGGGAACTGGGAACCTCTTTCTACAGAGAGCCTGGGTTA-GGGCCCTGTTGCACCTGCTTGCTATCCTAAGTGCAGGCAAATGAGAAATGTTTTAATTCCCCCTTAGGAATGAGAAAATACATTATGTTACTTTGAATATCCATAGCCTCAACAGATACTAATTTATGGAAGAGAACGTTGAGACT--GTCAGGACTAAATACTTAAAGCAAAATCAGGAAATAGGAGGTTGTGCTGTT-ATG-----Tgctgctatccaca--tgtcttttgagctctcaaaatgtggctaagtccaaattgagatgggctgaaagtgtaaaatatacaccagattgcaaacac-tattgtgtggaaaaaaaaa------atct--cagtagtaatattgtaatgtaaacgatctcaatatgtattaccaattacatgttgaaatga i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37681457 426 + 132586672 CATACCTTTGGGAACTGGGAACCTCTTTCTACAGAGAGCCTGGGTTA-GGGCCCTGTTGCACCTGCTTGCTATCCTAAGTGCAGGCAAATGAGAAATGTTTTAATTCCCCCTTAGGAATGAGAAAATACATTATGTTACTTTGAATATCCATAGCCTCAACAGATACTAATTTATGGAAGAGAACGTTGAGACT--GTCAGGACTAAATACTTAAAGCAAAATCAGGAAATAGGAGGTTGTGCTGTT-ATG-----Tgctgctatccaca--tgtcttttgagctctcaaaatgtggctaagtccaaattgagatgggctgaaagtgtaaaatatacaccagattgcaaacac-tattgtgtggaaaaaaaaa------atct--cagtagtaatattgtaatgtaaacgatctcaatatgtattaccaattacatgttgaaatga i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11338634 429 + 104110932 CATACCTTTGGGAACTGGGAACCTCTTTCTACAGAGAGCCTGGGTTA-GGGCCCTGTTGCACCTGCTTGCTATCCTAAGTGCAGGCAAATGAGAAATGTTTTAATTCCCCCTTaggaatgagaaaatacattatgTTACTTTGAATATCCATAGCCTCAACAGATACTAATTTATGGAAGAGAACGTTGAGACT--GTCAGGACTAAATACTTAAAGCAAAATCAGGAAATAGGAGGTTGTGCTGTTCATG-----TGCTGCTATCCACATGTGTCTTTTGAGCTCTCAAAATATGGCTAAGTCCAAATTGAGATGGGCTGAAAGTGTAAAATATACACCAGATTGCAAACAC-Tattgtgtggaaaaaaaaa------atct--cagtagtAATATTGTAATGTAAACCATCTCAATATGTAATAccaattacatgttgaaatga i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34439847 429 + 128595539 CATACCTTTGGGAACTGGGAACCTCTTTCTACAGAGAGCCTGGGTTA-GGGCCCTGTTGCACCTGCTTGCTATCCTAAGTGCAGGCAAATGAGAAATGTTTTAATTCCCCCTTAGGAATGAGAAAATACATTATGTTACTTTGAATATCCATAGCCTCAACAAATACTAATTTATGGAAGAGAACGTTGAGACT--GTCAGGACTAAATACTTAAAGCAAAATCAGGAAATAGGAGGTtgtgctgttcatg-----tgctgctatccacatgtgtcttttgagctctcaaaatatagctaagtccaaattgagatgggctgaaagtgtaaaatatacaccagattgcaaacac-tattgtgtgggaaaaaaaa------atct--cagtagtaatattgtaatgtaaacgatctcaatatgtaataccaattacatgttgaaatga i chlSab2.chr10 I 199 C 0 s calJac3.chr6 87923045 409 - 158406734 CATACCTTTTGGAACTGGGAACCTCTTTCTACAGAGAGCCTGGGTTAGGGGCCCTGTTGCACCTGCTTGCTATCCTAAGTGCAGGAAAATGAGAAATGTTTTAATTCCCCCTTAGGAATGAGAAAATGCATTACATTACTGTGAATATATATAGCCTCAACAGATAC----TTATGGAAGAGA----------T--GTTGAGACTAAATACTTAAA-----ATCAGGAAGTAGGAGGctgtgctgttcaca-----tgctactagccacatgtgccttttgagctctcaaaatgtggctaagtccaaattgagatgtgctgaaagtggaaaatatgcaccagattgcaaacac-tattgtgtg--agaaaaag------atct--cagtagtaatattgtaatgtaaacgatctcaacatataataccaattacatgttgaaatga i calJac3.chr6 C 0 C 0 s mm10.chr2 49770572 375 + 182113224 CACACTTTC--AAATCAGT--TCTCTCTTTGTAGAATGCCTGGGTCA-GGACCATGCCTGACCTGCCTGGTGATGTGTGTCCTGGTTAATGAGTGATG-TCTGATTGTCCCCTGGGAC--AGGAAGTGCTTTGTGCTATTCCGATGGCACACAGATGCAGAATGTACTGACTTTTGGAAGAGACTACCGTGACTGGGTCAGGACAAAATACTTAGA-----TGCAGGATGGAGGAAGCTCTGTTATCCAT------------------CATGT---------------------TAGCCGAGTCTCAACTGAGAAGCAGTGAGGGCGAGCAGGAGACATCAGGCTGAGCACACGCACGGTGGAGTATGTGCCA------GTCCCGCAGTGGCAACACTGT--TGTGAAGAATAGCAGCATTCG--------tacatattgaag--- i mm10.chr2 C 0 I 76 s canFam3.chr19 50680031 347 + 53741614 -----CTTCGGG-------------------------TCCGGGGTGAGGGACCGTGTCTGACGTGCCT-CAATCCCTGGCACGTGCAAGTG--------CCCGAGTACCCCTCGGGAGTGAGGAA---------------------ACCAGCAGCGTCCATAGGCGCGGCCTTCTGGAGGAGACT--------C--GCCAGG--------------GCGACGGCAGCAAGC-GGAGGccgcaccgtctaggacgccagccactcgccgcgtgtggccgcggagccctaggaaggcggcccagtccaagtggagctgtgccgaaggtata-agtgtgca-cacatggccagcac------tgtggaaaaaagactaaggtgcct--gcacagcgctgctgtaatgaagact-tctcagtatggaatatggatcgcatgttgaaa--- i canFam3.chr19 C 0 C 0 a score=251737.000000 s hg38.chr2_GL582966v2_alt 94553 72 + 96131 ---tactat----------ttaggctatataaaatatattacaattaatcttacctatttcttttcactttttaatgtagccact s panTro4.chr2B 153207375 72 + 247518478 ---tactat----------ttaggctatataaaatatattacaattaatcttacctatttcttttcactttttaatgtagccact i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38415150 72 + 135000294 ---tactat----------ttaggctatataaaatatattacaattaatcttacctatttcttttcactttttaatgtagccact i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82366778 72 - 85365473 ---tactat----------ttaggctatataaaatacattacaattaatcttacctatttcttttcattttttaacgtagccact i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11978790 82 + 106825570 ---tactattttgaatatattaggctatataaaatatattacaattaatcttacctatgtcttttcactttttaatgtagccact i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37681883 82 + 132586672 ---tactattttgaatatattaggctatataaaatatattacaattaatcttacctatgtcttttcactttttaatgtagccact i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11339063 82 + 104110932 ---tactattttgaatatattaggctatataaaatatattacaattaatCTTACctatgtcttttcactttttaatgtagccact i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34440276 82 + 128595539 ---tactattttgaatatattaggctatataaaatatattacaattaatcttacctatgtcttttcactttttaatgtagccact i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87923454 82 - 158406734 ---tagtattttgaatatattaggctatataaaatatattacaattaatcttacctatttcttcttactttttaatgtagccact i calJac3.chr6 C 0 C 0 s canFam3.chr19 50680378 83 + 53741614 tgacagtatattgaatttattgggttaaataaaatatattat--taaaattaacttgcttcttcccactttgtaacgtgaccact i canFam3.chr19 C 0 C 0 e mm10.chr2 49770947 76 + 182113224 I a score=108632.000000 s hg38.chr2_GL582966v2_alt 94625 38 + 96131 agagaatttaaaattaaatatgtggcttggccgggcac s panTro4.chr2B 153207447 38 + 247518478 agacaatttaaaattaaatatgtggcttggccgggcac i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38415222 38 + 135000294 agaaaatttaaaattaaatatgtggcttggctgggcac i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82366850 38 - 85365473 aggaaatttaaaattaaataggtggcttggccgggcat i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11978872 38 + 106825570 agaaaatttaaaattaaatatgtggcttggccaggcac i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37681965 38 + 132586672 agaaaatttaaaattaaatatgtggcttggccaggcac i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11339145 38 + 104110932 agaaaatttaaaattaaatatgtggcttggccaggcac i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34440358 38 + 128595539 agaaaatttaaaattaaatatgtggcttggccaggcat i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87923536 37 - 158406734 agaaaatttgaaattaaatatgtggctAGACC-Tgcat i calJac3.chr6 C 0 C 0 e canFam3.chr19 50680461 0 + 53741614 C e mm10.chr2 49770947 76 + 182113224 I a score=18756.000000 s hg38.chr2_GL582966v2_alt 94663 13 + 96131 ggtggcttatacc s panTro4.chr2B 153207485 13 + 247518478 ggtggcttacacc i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38415260 13 + 135000294 agtggcttacacc i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82366888 13 - 85365473 ggtggcttacaca i nomLeu3.chr20 C 0 C 0 s papAnu2.chr12 11339183 13 + 104110932 ggtggcgcatgcc i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34440396 13 + 128595539 ggtggcgcacacc i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87923573 13 - 158406734 ggtggctcacacc i calJac3.chr6 C 0 C 0 e canFam3.chr19 50680461 0 + 53741614 C e macFas5.chr12 37682003 0 + 132586672 C e mm10.chr2 49770947 76 + 182113224 I e rheMac3.chr12 11978910 0 + 106825570 C a score=84256.000000 s hg38.chr2_GL582966v2_alt 94676 96 + 96131 tgtaatcccagcactttgggaggccgaggtgggtggatcacctgaggtcaggaatttgagaccagcctggacaacatggtgaaacaccgtctctac s panTro4.chr2B 153207498 96 + 247518478 tgtaatcccagcactttgggaggccgaggtgggtggatcacctgaggtcaggaatttgagaccagcctggacaacatggtgaaacaccgtctctac i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38415273 96 + 135000294 tgtaatcccagcactttgggaggccgaggtgggtggatcacctgaggtcaggagtttgagaccagcctggacaacatggtgaaacaccgtctctac i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82366901 96 - 85365473 tgtaatcccagcactttgggaggccgaggtgggtggatcacgtgaggtcaggagttcgagaccagcctggacaacatggtgaaacagcgtctctac i nomLeu3.chr20 C 0 C 0 s calJac3.chr6 87923586 96 - 158406734 tgtaatcccagcactttgggaggctgaggtgggcggatcacctgaggtcaggagttcgagaccagcctggccaacatgggaaaactctgtctctac i calJac3.chr6 C 0 C 0 e canFam3.chr19 50680461 0 + 53741614 C e macFas5.chr12 37682003 0 + 132586672 C e mm10.chr2 49770947 76 + 182113224 I e chlSab2.chr10 34440409 0 + 128595539 C e papAnu2.chr12 11339196 0 + 104110932 C e rheMac3.chr12 11978910 0 + 106825570 C a score=9555.000000 s hg38.chr2_GL582966v2_alt 94772 7 + 96131 taaaaat s panTro4.chr2B 153207594 7 + 247518478 taaaaat i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38415369 7 + 135000294 taaaaat i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82366997 7 - 85365473 taaaaat i nomLeu3.chr20 C 0 C 0 s calJac3.chr6 87923682 7 - 158406734 taaaaat i calJac3.chr6 C 0 C 0 s canFam3.chr19 50680461 7 + 53741614 taaaaat i canFam3.chr19 C 0 C 0 e macFas5.chr12 37682003 0 + 132586672 C e mm10.chr2 49770947 76 + 182113224 I e chlSab2.chr10 34440409 0 + 128595539 C e papAnu2.chr12 11339196 0 + 104110932 C e rheMac3.chr12 11978910 0 + 106825570 C a score=15227.000000 s hg38.chr2_GL582966v2_alt 94779 19 + 96131 acaaaaattagccgggtgt s panTro4.chr2B 153207601 19 + 247518478 acaaaaattagccgggtgt i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38415376 19 + 135000294 acaaaaattagctgggtgt i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82367004 19 - 85365473 acaaaaattagccgggcgt i nomLeu3.chr20 C 0 C 0 s calJac3.chr6 87923689 19 - 158406734 gcaaaaattagtcgggcat i calJac3.chr6 C 0 C 0 e canFam3.chr19 50680468 0 + 53741614 C e macFas5.chr12 37682003 0 + 132586672 C e mm10.chr2 49770947 76 + 182113224 I e chlSab2.chr10 34440409 0 + 128595539 C e papAnu2.chr12 11339196 0 + 104110932 C e rheMac3.chr12 11978910 0 + 106825570 C a score=21440.000000 s hg38.chr2_GL582966v2_alt 94798 13 + 96131 ggtggcaaaccct s panTro4.chr2B 153207620 13 + 247518478 ggtggcaaaccct i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38415395 13 + 135000294 ggtggcacaccct i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82367023 13 - 85365473 ggtggcacaccct i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11978910 13 + 106825570 ggtggcacacccc i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37682003 13 + 132586672 ggtggcacacccc i macFas5.chr12 C 0 C 0 s calJac3.chr6 87923708 13 - 158406734 gatggcacgcccc i calJac3.chr6 C 0 C 0 e canFam3.chr19 50680468 0 + 53741614 C e mm10.chr2 49770947 76 + 182113224 I e chlSab2.chr10 34440409 0 + 128595539 C e papAnu2.chr12 11339196 0 + 104110932 C a score=378635.000000 s hg38.chr2_GL582966v2_alt 94811 122 + 96131 tgtaatcccagctacttgggaggctaaggcagaagaatcacttgaacccgagaggcagaggttgcagtgagtcgatatcgcg-ccactgcaccccagcctgggtgacaagagtgaaactccat s panTro4.chr2B 153207633 122 + 247518478 tgtaatcccagctacttgggaggctaaggcagaagaatcacttgaacccgagaggcagaggttgcagtgagctgatattgcg-ccactgcaccccagcctgggtgacaagagtgaaactccat i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38415408 122 + 135000294 tgtaatcccagctatttgggaagctaaggcagaagaatcacttgaacccgagaggcagaggttgcagtgagctgatatcgcg-ccattgcgctccagcctgggtgacaagagtgaaactccat i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82367036 122 - 85365473 tgtaatcccagctacttgggaggctaaggcagaagaatcacttgaatccgagaggcagaggttgcagtgagccgatattgcg-ccactgcacaccagcctgggtgacaagagtgaaactccat i nomLeu3.chr20 C 0 C 0 s rheMac3.chr12 11978923 122 + 106825570 tgtaatcccagctacttgggaggctaaggcagaagaatcacttgaacccgagaggcagaggttgcagtgagccaatattgcg-ccaccgcactccagcctgggtgacaagagtgaaactccgt i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37682016 122 + 132586672 tgtaatcccagctacttgggaggctaaggcagaagaatcacttgaacccgagaggcagaggttgcagtgagccaatattgcg-ccaccgcactccagcctgggtgacaagagtgaaactccgt i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11339196 122 + 104110932 tgtaatcccagctacttgggaggttaaggcagaagaatcacttgaacccgagaggcagaggttgcagtgagccaatattgcg-ccaccgcactccagcctgggtgacaagagtgaaactccgt i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34440409 122 + 128595539 tgtaatcccagctacttgggaggttaaggcagaagaatcacttgaacccgagaggcagaggttgcagtgagccaatattgtg-ccaccgcactccagcctgggtgacaagagtgaaactccgt i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87923721 123 - 158406734 tgtaatcccagctacttgggaggctgaggcagaagaattgcttgaacctgagaggcagaggttgcagtgagctgagattgtacccactgcattccagcctgggcaacaagagcaaaactctct i calJac3.chr6 C 0 C 0 e canFam3.chr19 50680468 0 + 53741614 C e mm10.chr2 49770947 76 + 182113224 I a score=3965642.000000 s hg38.chr2_GL582966v2_alt 94933 1021 + 96131 ctcaa----------------aaac--aaacaaac-------aaaaaatatgtggcttgtgttatatttgtatctgacagctctg----------------GTCTAAACAT--CTAGAATTA--------AACAAA--ACTTTTTTGAGGAGTAAATTTCTACTGTGTTTTCTAATTCCTATGTTCTCTCTTTGGTTCTCTTTCAACAGATATGA--CTCCACGTAGCATGTCAAGGACTACATTAATCACCAATTCCTTTATTTTT-CCCCCCC----TACAGTTTCCA-----TTTTTTTTTTATACTTGCTTACTCCAGCCATCTGCAGTACACCAGTTTCAGGTCTTTTGAGCTGTGTAGAGTTTCTGTGTGTACAGATGTGTGCTCGGACTTTTCTCTTTTTGAGAAATCTGAAGGAGATGGTTGCAGAAG--ATCCACTTACTACTGAGAACCATTACCACCGACTCGGCCTCCGGGGTGTTGGGTGGTTTCTGGGTGGTTCCTGGAGCCTCCT--CTGGGCAGTGCACTGTCCCAT-----CTGTACGCCCTAATGTGCCATTCCCTAGAGGGGAACAACCAAGTGCCGTGGAGGCAGATGATCATGGTCTGCCTCAACTGTCTGGTTTCCTGTAAAATAA--------------------------ACACATTGTTTTATA-TTTTTAGGGAAC----AAAAAGTGCTGCTATAGGG-TTCAAAGTTTTCCTTCTGAACACTTTTCCGAAACAAA---------------TTACCCCAAAGACACATTTTGAATATCCTGGTCACATCTTTGGATCTGTAAAATATACCTTTTAGT-ATGGCACCTGTTAAAATGCAAAGCAAATTTCTTTGGGGCAGAAAAACAATCTGACAGTAGCAGTGTAGAATTTGTTCATTCAAATACATCTGTGTAAATGCAAAAAGTCATAAAATTCACCTCCGAGCTGCTTGCTTTTGAACCTGCAGCAACTAGTCTTAGCCGGCCCG---GTTTGAA----CATCGTTCTTTCAGAAGTGCTGAAAATGCTGCAAAGTTGGATAAGTGGAAATGTGGCTGCC-CCTCTCCTCACTACTTCCTCTCTGATCGTTCTGAAGCTTGCATTGGGAATGGCTGCTTTC s panTro4.chr2B 153207755 1019 + 247518478 ctcaa----------------aaac--aaacaaac-------aaaaaatatgtggcttgtgttatatttgtatctgacagctctg----------------GTCTAAACAT--CTAGAATTA--------AACAAA--ACTTTTTTGAGGAGTAAATTTCTACTGTGTTTTCTAATTCCTATGTTCTCTCTTTGGTTCTCTTTCAACAGATATGA--CTCCACGTAGCATGTCAAGGACTACATTAATCACCAATTCCTTTATTTTT-CCCCCCC----TACAGTTTCCA-------TTTTTTTTATACTTGCTTACTCCAGCCATCTGCAGTACACCAGTTTCAGGTCTTTTGAGCTGTGTAAAGTTTCTGTGTGTACAGATGTGTGCTCGGACTTTTCTCTTTTTGAGAAATCTGAAGGAGATGGTTGCAGAAG--ATCCACTTACTACTCAGAACCATTACCACCAACTCGGCCTCCGGGGTGTTGGGTGGTTTCTGGGTGGTTCCTGGAGCCTCCT--CTGGGCAGTGCACTGTCCCAT-----CTGTACGCCCTAATGTGCCATTCCCTAGAGGGGAACAACCAAGTGCCGTGGAGGCAGATGATCATGCTCTGCCTCAACTGTCTGGTTTCCTGTAAAATAA--------------------------ACACATTGTTTTATA-TTTTTAGGGAAC----AAAAAGTGCTGCTATAGGG-TTCAAAGTTTTCATTCTGAACACTTTTCCGAAACAAA---------------TTACCCCAAAGACACATTTTGAATATCCTGGTCACATCTTTGGATCTGTAAAATATACCTTTTAGT-ATGGCACCTGTTAAAATGCAAAGCAAATTTCTTTGGGGCAGAAAAACAATCTGACAGTAGCAGTGTAGAATTTGTTCATTCAAATACATCTGTGTAAATGCAAAAAGTCATAAAATTCACCTCCGAGCTGCTTGCTTTTGAACCTGCAGCAACTAGTCTTAGCCGGCCCG---GTTTGAA----CATCGTTCTTTCAGAAGTGCTGAAAATGCTGCAAAGTTGGATAAGTGGAAATGTGGCTGCC-CCTCTCCTCACTACTTCCTCTCTGATCGTTCTGGAGCTTGCATTGGGAATGTCTGCTTTC i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38415530 1027 + 135000294 ctcaa----------------aaac--aaacaaac-------aaaaaatatgtggctcgtattatatttgtatccgacagctctg----------------GTCTAAACAT--CTAGAATTA--------AACAAA--ACTTTTTTGAGGAGTAAATTTCTACTGTGTTTTCTAATTCCTGTGTTCTCTCTTTGGTTCTCTTTCAACAGATATGA--CTCCATGTAGCATGTCAAGGACTACATTAATCACCAATTCCTTTATTTTTGTCCCCCC----TACAGTTTCCTTTTTTTTTTTTTTTTATACTTGCTTACTCCAGCCATCTGCAGTACACCAGTTTCAGGTCTTTTGAGCTGTGTAGAGTTTCTGTGTGTACAGATGTGTGCTCGGACTTTTCTCTTTTTGAGAAATCTGAAGGAGATGGTTGCAGAAG--ATCCACTTACTACTCAGAACCATTACCACCGACTCGGCCTCCGGGGTGTTGGGTGGTTTCTGGGTGGTTCCTGGAGCCTCCT--CTGGGCAGTGCACTGTCCCAT-----CTGTACGCCCTAATGTGCCATTCCCTAGAGGGGAACAACCAAGTGCCGTGGAGGCAGATGATCATGCTCTGCCTCAACTGTCTGGTTTCCTGTAAAATAA--------------------------ACACATTGTTTTATA-TTTTTAGGGAAC----AAAAAGTGCTGCTATAGGG-TTCAAAGTTTTCATTCTGAACACTTTTCCGAAACAAA---------------TTACCCCAAAGACACATTTTGAATATCCTGGTCACATCTTTGGATCTGTAAAATATACCTTTTAGT-ATGGCACCTGTTAAAATGCAAAGCAAATTTCTTTGGGGCAGAAAAACAATCTGACAGTAGCAGTGTAGAATTTGTTCATTCAAGTACATCTGTGTAAATGCAAAAAGTCATAAAATTCACCTCCGAGCTGCTTGCTTTTGAACCTGCAGCAACTAGTCTTAGCCGGCCCG---GTTTGAA----CGTCATTCTTTCAGAAGTGCTGAAAATGCTGCGAAGTTGGATAAGTGGAAATGTGGCTGCC-CCTCTCCTCACTACTTCCTCTCTGATCGTTCTGGAGCTTGCATTGGGAATGGCTGCTTTC i ponAbe2.chr2b C 0 C 0 s nomLeu3.chr20 82367158 1031 - 85365473 ctcaaaaacaaacaaacaaacaaac--aaacaaac-------aaaaaatatgtggcttatgttatatttgtatctgacagctctg----------------GTCTAAACAT--CTAGAATTA--------AACAAA--ACTTTTTTGAGAAGTAAATTTCTACTGTGTTTTCTAATTCCTGTGTTCTCTCTTTGGTTCTCTTTCAACAGATATGA--CCCCACGTAGCATGTCAAGGACTACATTAATCACCAATTCCTTTATTT---TCCCCCC----TACAGTTTCCA------TTTTTTTTTATACTTGCTTATTCCAGCCATCTGCAGTATACCAGTTTCAGGTCTTTTGAGCTGTGTAGAGTTTCTGTGTGTACAGATGTGTGCTCGGACTTTTCTCTTTTTGAGAAATCTGAAGGAGATGGTTGCAGAAG--ATCCACTTACTACTCAGAACCATTACCGCTGCCTCGGCCTCCGGGGTGTTGGCTGGTTTCTGGGTGGTTCCTGGAGCCTCCT--CTGGGCAGTGCACTGTCCCAT-----CTGTACGCCCTAATGTGCCATTCCCTAGAGGGGAACAACCAAGTGCCGTGGAGGCAGATGATCATGCTCTGCCTCAACTGTCTGGTTTCCTGTAAAATAA--------------------------ACAC---GTTTTATA-TTTTTAGGGAAC----AAAAAGTGCTGCTATAGGG-TTCAAAGTTTTCATTCTGAACACTTTTCCGAAACAAA---------------TTACCCCAAAGACACATTTTGAATATCCTGGTCACATTTTTGGATCTGTAAAATATACCTTTTAGT-ATGGCACCTGTTAAAATGCAAAGCAAATTTCTTTGGGGCAGAAAAACAATCTGACAGTAGCAGTGTAGAATTTGTTCATTCAGATACATCTGTGTAAATGCAAAACGTCATAAAATTCACCTCCGAGCTGCTTGCTTTTGAACCTGCAGCAACTAGTCTTAGCCGGCCCG---GTTTGAA----CGTCATTCTTTCAGAAGTGCTGAAAATGCTGCAAAGTTGGATAAGTGGAAATGTGGCTGCC-CCTCTCCTCACTACTTCCTCTCTGATCGTTCTGGAGCTTGCATTGGGAATGGCTGCTTTC i nomLeu3.chr20 C 0 N 0 s rheMac3.chr12 11979045 1021 + 106825570 ctcac----------------aaac--aaacaaac-------agaaaatatgtgacttatgttatatttgtatctgacagctctg----------------GTCTAAACAT--CTAGAATTA--------AACAAA--ACTTTTTTGAGAAGTAAATTTCTACTGTGTTCTCTAATTCCTATGTTTTCTCTTTGGTTCTCTTTCAACAGATATGA--CTCCACATAGCATGTCAAGGACTACATTAATCACCAATTCCTTTATTTTTTTCCCCCC----TACAGTTTCCA---TTTTTTTTTTTTATACTTGCTTACTCCAGCCATCTGCAGTATACCAGTTTCAGGTCTTTTGAGCTGTGTAGAGTTTCTGTGTGTACAGATGTGTGCTCGGACTTTTCTCTTTTTGAGAAATCTGAAGGAGATGGTTGCAGAAG--ATCCACTTACTACTCAGAACCATTGCCGCTGACTCGGCCTCCGGGGTGTTGGGTGGTTTCTGGGTGGTTCCTGGAGCCTCCT--CTGGGCAGTGCACTGTCCCAT-----CTGTACGCCCTAATGTGCCATTCCCTGGAGGGGAACAACCAAGTACCGTGGAGGTGGGAGACCATGCTCTGCCTCAACTGTCTGGTTTCCTGTAAAATAA--------------------------ACACATTATTTTATA-TTTTTAGGGAAC----AAAAAGTGCTGCTCTAGGG-TTCAAAGTTTTCATTCTGAACACTTTTCCGAAACAAA---------------TTACCCCGAAGACACATTTTGAATATCCTGGTCACATCTTTGGATCTGTAAAATATACCTTTTAGTAATGGCACCTGTTAAAATGCAAAGCAAATTTCTTTGGGGCAGAAAAACAATCTGACAGTAGCAGTGTAGAAATTGTTCATTCAGATACATCTGTGTCAATGCAAAAAGTCATAAAATTCACCTCCGAGCTGCTTGCTTTTCAACCTGCAGCAACTAGTCTCGGCTGG-CCG---GTTTGAA----CGTCATTCTTTCAGAAGTGCTGAAAATGCTGCAAAGTTT--TAAGTGGAAATGTGGCTGCC-CCTCTCCTCACTTCTTCCTCCCTGATCGTTCTGGAGCTGGCATTGGGAACGGCTG-TTTC i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37682138 1023 + 132586672 ctcac----------------aaac--aaacaaac-------agaaaatatgtgacttatgttatatttgtatctgacagctctg----------------GTCTAAACAT--CTAGAATTA--------AACAAA--ACTTTTTTGAGAAGTAAATTTCTACTGTGTTCTCTAATTCCTATGTTTTCTCTTTGGTTCTCTTTCAACAGATATGA--CTCCACATAGCATGTCAAGGACTACATTAATCACCAATTCCTTTATTTTTTTCCCCCC----TACAGTTTCCA--TTTTTTTTTTTTTATACTTGCTTACTCCAGCCATCTGCAGTATACCAGTTTCAGGTCTTTTGAGCTGTGTAGAGTTTCTGTGTGTACAGATGTGTGCTCGGACTTTTCTCTTTTTGAGAAATCTGAAGGAGATGGTTGCAGAAG--ATCCACTTACTACTCAGAACCATTGCCGCTGACTCGGCCTCCGGGGTGTTGGGTGGTTTCTGGGTGGTTCCTGGAGCCTCCT--CTGGGCAGTGCACTGTCCCAT-----CTGTACGCCCTAATGTGCCATTCCCTGGAGGGGAACAACCAAGTACCGTGGAGGTGGGAGACCATGCTCTGCCTCAACTGTCTGGTTTCCTGTAAAATAA--------------------------ACACATTATTTTATA-TTTTTAGGGAAC----AAAAAGTGCTGCTCTAGGG-TTCAAAGTTTTCATTCTGAACACTTTTCCGAAACAAA---------------TTACCCCGAAGACACATTTTGAATATCCTGGTCACATCTTTGGATCTGTAAAATATACCTTTTAGTAATGGCACCTGTTAAAATGCAAAGCAAATTTCTTTGGGGCAGAAAAACAATCTGACAGTAGCAGTGTAGAAATTGTTCATTCAGATACATCTGTGTCAATGCAAAAAGTCATAAAATTCACCTCCGAGCTGCTTGCTTTTCAACCTGCAGCAACTAGTCTCGGCTGG-CCG---GTTTGAA----CGTCATTCTTTCAGAAGTGCTGAAAATGCTGCAAAGTTT--TAAGTGGAAATGTGGCTGCC-CCTCTCCTCACTTCTTCCTCCCTGATCGTTCTGGAGCTGGCATTGGGAACGGCTGCTTTC i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11339318 1023 + 104110932 ctcac----------------aaacaaaaacaaac-------agaaaatatgtgACTTATGTTATATTTGTATCTGACAGCTCTG----------------GTCTAAACAT--CTAGAATTA--------AACAAA--ACTTttttgagaagtaaatttctacTGTGTTCTCTAATTCCTATGTTTTCTCTTTGGTTCTCTTTCAACAGATATGA--CTCCACATAGCATGTCAAGGACTACATTAATCAccaattcctttatttttttcccccc----tacagtttcca----tttttttttttatacttgcTTACTCCAGCCATCTGCAGTATACCAGTTTCAGGTCTTTTGAGCTGTGTAGAGTTTCTGTGTGTACAGATGTGTGCTCggacttttctctttttgagaaatCTGAAGGAGATGGTTGCAGAAG--ATCCACTTACTACTCAGAACCATTGCCGCTGACTCAGCCTCCGGGGTGTTGGGTGGTTTCTGGGTGGTTCCTGGAGCCTCCT--CTGGGCAGTGCACTGTCCCAT-----CTGTACTCCCTAATGTGCCATTCCCTGGAGGGGAACAACCAAGTACCGTGGAGGCGGGAGACCATGCTCTGCCTCAACTGTCTGGTTTCctgtaaaataa--------------------------acacattattttata-tttttagggaaC----AAAAAGTGCTGCTCTTGGG-TTCCAAGTTTTCATTCTGAACACTTTTCCGAAACAAA---------------TTACCCCGAAGACACATTTTGAATATCCTGGTCACATCTTTGGATCTGTAAAATATACCTTTTAGTAATGGCACCTGTTAAAATGCAAAGCAAATTTCTTTGGGGCAGAAAAACAATCTGACAGTAGCAGTGTAGAAATTGTTCATTCAGATACATCTGTGTCAATGCAAAAAGTCATAAAATTCACCTCCGAGCTGCTTGCTTTTCAACCTGCAGCAACTAGTCTCGGCTGG-CCG---GTTTGAA----CGTCATTCTTTCAGAAGTGCTGAAAATGCTGCAAAGTTT--TAAGTGGAAATGTGGCTGCC-CCTCTCCTCACTTCTTCCTCCCTGATCGTTCTGGAGCTGGCATTGGGAACGGCTGCTTTC i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34440531 1020 + 128595539 ctcac----------------aaac--aaacaaac-------agaaaaTATGTGACTTATGTTATATTTGTTGCTGACAGCTCTG----------------GTCTAAACAT--CTAGAATTA--------AACAAA--ACTTTTTTGAGAAGTAAATTTCTACTGTGTTCTCTAATTCCTATGTTTTCTCTTTGGTTCTCTTTCAACAGATATGA--CTCCACATAGCATGTCAAGGACTACATTAATCACCAATTCCTTTATTTTTTTCCCCCC----TACAGTTTCCA-----TTTTTTTTTTATACTTGCTTACTCCAGCCATCTGCAGTACACCAGTTTCAGGTCTTTTGAGCTGTGTAGAGTTTCTGTGTGTACAGATGTGTGCTCGGACTTTTCTCTTTTTGAGAAATCTGAAGGAGATGGTTGCAGAAG--ATCCACTTACTACTCAGAACCATTGCTGCTGACTCGGCCTCCGGGGTGTTGGGTGGTTTCTGGGTGGTTCCTGGAGCCTCCT--CTGGGCAGTGCACTGTCCCAT-----CTGTACACCCTAATGTGCCATTCCCTGGAGGGGAACAACCAAGTACCGTAGAGGCGGGAGACCATGCTCTGCCTCAACTGTCTGGTTTCCTGTAAAATAA--------------------------ACACATTATTTTATA-TTTTTAGGGAAC----AAAAAGTGCTGCTCTAGGG-TTCAAAGTTTTCATTCTGAACACTTTTCCGAAACAAA---------------TTACCCCGAAGACACATTTTGAATATCCTGGTCACATCTTTGGATCTGTAAAATATACCTTTTAGTAATGGCACCTGTTAAAATGCAAAGCAAATTTCTTTGGGGCAGAAAAACAATCTGACAGTAGCAGTGTAGAAATTGTTCATTCAGATACATCTGTGTCAATGCAAAAAGTAATAAAATTCACCTCCGAGCTGCTTGCTTTTCAACCTGCAGCAACTAGTCTCGGCTGG-CCG---GTTTGAA----CGTCATTCTTTCAGAAGTGCTGAAAACGCTGCAAAGTTT--TAAGTGGAAATATGGCTGCC-CCTCTCCTCACTTCTTCCTCCCTGATCGTTCTGGAGCTGGCATTGGGAACGGCTGCTTTC i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87923844 1021 - 158406734 ctcaa----------------aaac--aaacaaataaaaacaaaaaaaTATGTGGCTCATGTTATATTTGTATCCAAAAGCTCTG----------------GCCTAAACAT--CTAGAATTA--------AAT------TTTTTTTGATGAGTAAATTTCTACTGTGTTCTCTAATTCCTATGTTCTCTCTTTGGTTCTCTTTCAACAGATACGA--CTCCATGTAGCATGTCAAGGACTACATTAATCACCAATTCCTTTATTTTTTTCCCTCT----TACAGTTTCCA-------TTTTTTTTATACTTGCTTACCCCAGCCATCTGCAGTACACCAGTTTCAGGTC-TTTGAGCTGTGTAGAGTTTCTGTGTGTACAGATGTTTGCTCAGACTTTTCTCTTTCTGAGAAATCTGAAGGAGATGGTTGCAGAAG--ATCCATTTACTACGCAGAACCATTACCGCTGACTCGGCCTCCAGGGCGTTGGGTGGTTTCTGGGTGGTACCTGGAGCCTCCT--CTGGGCAGTGCACTGTCCCAT-----CTGTACGCCCTAATGTGCCATTCCCTGGAGGGGAACAACCAAGTGCCGTGGAGGCAGGTGATCGTGCTCTGCCTCAACTGTCTGGTTTCCTGTAAAATAA--------------------------ACACATTACTTTATA-TTTTTAAGGAAC----AAAAAGTGCTGCTATAGGG-TTCAAAGTTTTCATTCTGAACACTTTTCCGAAACAAA---------------TTACCCCAAAGACACATTTTGAATATCCTGATCACATCTTTGGATCTGTAAAATATACCTTTTAGT-ATGGCACCTGTTAAAATGCAAAGCAAATTTCTTTGGGGCAGAAAAACAATCTGACAGTGGCAATATAGAATTTGTTCATTCACATACATCTATGTAAATGCAAAGAGTCATAAAATTCACGTCCGAGCTGCTTGCTTTTGAACCTGCAGCAACGAGTCTTGACCTGCTTG---GTTTGAA----CATCATTCTTTCAGAAGTGCTGAAAATGCTGCAGAGTTGGATAAGTGCAAATGTGACTGCC-CC-CTCCTCACTTCTTCCTCCCTGATCCTTCTGGAGCTTGCATTGGAAATGGCCTCTTTC i calJac3.chr6 C 0 C 0 s mm10.chr2 49771023 977 + 182113224 ttctg----------------aaag--aa-------------ataaaataagaggctcgagttgtacttgtattggacagctctA----------------CTCAAAATGT--CTAGACTGA--------AACAGA-----CGTCTGAGGAGTGAATCTGC----TGACCACTAATGCCTGTGTTCTCTCTTTCATT---TCTCAACAGATATGA--CTCCACGTAGCATGAAAAGGACTGTAGTAGTCACCAGTTCCTTTCTGTCC-CCTCCTA----TACAGTTTCCG------TTTCTTTTTACACTTGCTTGC-CCAGCCGTCTGTAGTACACCAGATTCAGGTG-TTTGCGCTGTGTAGAATT--TGTGTGCACAGATACGTGCTTGGATCCTTCTC---CTAAGAAGTTGGAAGGAGGGGGTTACGCAAT--ACCCACTTCCTGCTCAGA--CCTCGCCACT-TCTCAGCCTCCGGGGT-------------TGTGTGGTCTCTGGAGGCCCCT------GCAGTGCACTGGCCCCTTGGAATGGAACGCCCTGCTGTGCCAT--CCTAGAGGG--ACAATCAAGTGCAGTGGAACCAG-TGACCACGCTCTGCCTCGACT-TCTGGTTTCCTGTAAAATAA--------------------------ACACATTACTTTATA-TTTTTAGGGAACAAAAAAAAAGTGCTGCTATAGGG-TTCAAAATTTTCATTCTGAACACTTTTCCAAAACCA------------------ACCCCAGAGA-GCATTTTAAATATCCTGGTCATATCTTTGGATCTGTAAAATAGACCTTTTAGT-ATGGCACCTGTTAAAATGCAAAGCAGATTCCTTCAAGGCAGAAAAACAGTTTGACAATAGCAGTGTAGAATTTGCTCATTCAGACACATCTATGAAAATGCGAAGAGTCACAGAATTCACCTCCAAGCTGCTCGCTGGTGAACCTGCAGTGACTAGTCCTGGCCAGCCCAGTTGTTTGAA----CATCATTCCTATACAAGAGTTGAAAATGCTGCAGAATTGGGTGAGTGGAGATGGGGCTGCCTCCCCTCCTCACAGCTTCCTCC--GGATGCCCTGGAAGCTGCCTTGGGCTCGCCTCTTTT- i mm10.chr2 I 76 C 0 s canFam3.chr19 50680468 999 + 53741614 ctaaa----------------aaaa--aaaaaaaa-------atgaaatgtgtggctcacgtggtatttctgttgggcagctctgATATCCCAGCATATTTATCTAAATATTACTCCAGTTATTCCACATATCAAAACACCTCCCCGAGGAGTGAATTTCCACCGTGGGCTCTAACTCCTGTGTTCTCTC------------TCCACAGGTATGGCTCTCCACGTAGCATGTCAAGGACTACATTAATCACCAATTCCTTTATTTTTTTTCCCCTCCTACACAGTTTCCA------TTTTCTTTTACACTTGCTTAC-CCAGCCATCTGCAGTACACCAGTTTCAGATA-TTTGAGCTGTGTAGAATCTGTGTGTGTACAGACGTGTGCTTGGACTTTCTTCCTCCTGAGAAATCTGACGCGGACGATTACGGAAGGAACCCGCTTACTCCTGGGAGCCAGCACCAGGGACTCGGCC--------GTTGGGTGGTCTCTGGGCGGTCCCTGGAGCCTCCTTTCTGGGTGGTGTGCTGTCCCGG-----CCA-ACGCCC------------------------ACCCTCGGGTGCCGCGGAGACGGGGGATCATGCTCTGCTGCAACTGTCTGGTTTCCTGTaaaaaaaaaaaaaaaaaaaaagcaaaaaaCAACACATGTTACTTTATATTTTTTAGGGAAC----AAAAA-TGCTGCTATAAGGTTTCAAAATTTTCATTCTGAACACTTTTCCGGaaaaaaaaaaaaaaaaaaaaCCAACCCCAAAGAAGCATTTCGAATACCCCGGTCACATCTTTGGATCTGTAAAATCCACCCTGTAGT-AGGGCACCTGTTAA-----------------------------------TCTGACAGTAGCAATGTAGAGTTTGTCCGTTC-GACCCATC-ACGTAGATGCAAAGAGTCATCAGTT----CGCCGAGCTGCTTGCTCCTGAACTTG--GCGCCCGCGCCCCGCCAGCCCC---GTGTGAACATCCGTCGTCCTTTCCGAAGTGTAGACCAC-CTGCCAAGCTGGATGAGTGG--CCGGGGGCGGC-CCCCTGCGC----CCCCCTCCCTGGCCCTGC----GCTTGCCCTGGGG--GGCCTCC--- i canFam3.chr19 C 0 C 0 a score=266965.000000 s hg38.chr2_GL582966v2_alt 95954 87 + 96131 TCT----A----ACCATTTTCAGCTTGAGTGGGTATTGCTGAAGAAATCCAACATCATTCCAGCAGTTGAAAAAGGAAGCCTT------CGGGAGAAAGTG s panTro4.chr2B 153208774 87 + 247518478 TCT----A----ACCATTTTCAGCTTGAGTGGGTATTGCTGAAGAAATCCAACATCATTCCAGCAGTTGAAAAAGGAAGCCTT------CGGGAGAAAGTG i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38416557 87 + 135000294 TCT----A----ACCATTTTCAGCTTGAGTGGGTATTGCTGAAGAAATCCAACATCATTCCATCAGTTGAAAAAGGAAGCCTT------GGGGAGAAAGTA i ponAbe2.chr2b C 0 C 0 s rheMac3.chr12 11980066 87 + 106825570 TCT----A----ACCGTTTTCAGCTTGAGTGGGTATTGCTGAAGAAATCCAGCATCATTCCAGCAGTTGAAAAAGGAAGCCTT------GGGGAGAAAGTA i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37683161 87 + 132586672 TCT----A----ACCGTTTTCAGCTTGAGTGGGTATTGCTGAAGAAATCCAGCATCATTCCAGCAGTTGAAAAAGGAAGCCTT------GGGGAGAAAGTA i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11340341 87 + 104110932 TCT----A----ACCATTTTCAGCTTGAGTGGGTATTGCTGAAGAAATCCAGCATCATTCCAGCAGTTGAAAAAGGAAGCCTT------GGGGAGAAAGTA i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34441551 87 + 128595539 TCT----A----ACCATTTTCAGCTTGAGTGGGTATTGCTGAAGAAATCCAGCATCATTCCAGCAGTTGAAAAAGGAAGCCTT------GGGGAGAAAGTA i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87924865 87 - 158406734 TCT----A----ACCATTTTCAGTTTGAGGGGGCATTGCTGAAGAAATCCAGCATCATTCCAGCAGTTGAAAAAGGAAGCCTT------GGGGAGAAAATA i calJac3.chr6 C 0 C 0 s mm10.chr2 49772000 91 + 182113224 TCTAGCAA----ACCATCGCGTGCTGGAGGAGATATTCCTAAAGAGATCCAGCGTCAGTACAGTAGTTGGAAAAGAATTCCCT------CAGGGGAAAGTC i mm10.chr2 C 0 C 0 s canFam3.chr19 50681467 94 + 53741614 TGT----AGGGCACCATCTGCAGCCTTGAGGGGTGCTGC-GGTGAAGTCCAGGATCCCTCCAGCAGTTGGAAAAGGAAGCCCTGGGCCGGGGGAGGGAG-- i canFam3.chr19 C 0 I 13 a score=38883.000000 s hg38.chr2_GL582966v2_alt 96041 18 + 96131 CTTGTCAAAATTTTGTTC s panTro4.chr2B 153208861 18 + 247518478 CTTGTCAAAATTTTGTTC i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38416644 18 + 135000294 CTTGACAAAATTTTGTTC i ponAbe2.chr2b C 0 C 0 s rheMac3.chr12 11980153 18 + 106825570 CTTGACACAATTTTGTTC i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37683248 18 + 132586672 CTTGACACAATTTTGTTC i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11340428 18 + 104110932 CTTGACACaattttgttc i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34441638 18 + 128595539 CTTGACACAATTTTGTTC i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87924952 18 - 158406734 CTTGAGAAGATTTTGTTC i calJac3.chr6 C 0 C 0 s mm10.chr2 49772091 17 + 182113224 ATTGGTGAGA-TTTATGC i mm10.chr2 C 0 C 0 e canFam3.chr19 50681561 13 + 53741614 I a score=167044.000000 s hg38.chr2_GL582966v2_alt 96059 68 + 96131 TTTGTGCTTGTGTATGAGTAAGTTGCCATGAATAAGTTATTATTTTAACCCATAATTGGCGACTGTTT s panTro4.chr2B 153208879 68 + 247518478 TTTGTGCTTGTGTATGAGTAAGTTGCCATGAATAAGTTATTATTTTAACCCATAATTGGCGACTGTTT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38416662 68 + 135000294 TTTGTGCTTGTGTATGAATAAGTTGCCATGAGTAAGTTATTATTTTAACCCATAATTGCTGACTGTTT i ponAbe2.chr2b C 0 C 0 s rheMac3.chr12 11980171 68 + 106825570 TTTGTGCTTGTATATGAATAAGTTGCCATGAATAAGTTATTATTTCAACCCATCATTGCCGACTGTTT i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37683266 68 + 132586672 TTTGTGCTTGTATATGAATAAGTTGCCATGAATAAGTTATTATTTCAACCCATCATTGCCGACTGTTT i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11340446 68 + 104110932 tttgtgcttgTATATGAGTAAGTTGCCATGAATAAGTTATTATTTCAACCCATCATTGCCGACTGTTT i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34441656 68 + 128595539 TTTGTGCTTGTGTATGAATAAGTTGTCATGAATAAGTTATTATTTCAACCCATCATTGCCAACTGTTT i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87924970 54 - 158406734 TTTGTGCTTGT--------------CTATGAATAAGTTATTATTTTAACCCATCATTGCAGACTGTTT i calJac3.chr6 C 0 C 0 s mm10.chr2 49772108 40 + 182113224 CTTGTCT----------------------------GTTTTTATTGTAACCTATCATTGCAAACTGCTG i mm10.chr2 C 0 C 0 s canFam3.chr19 50681574 47 + 53741614 TTTGTGC------------------CTATGAGTAAG---TTGTTTTAACCCTTCGTTGCTGAATGTTT i canFam3.chr19 I 13 N 0 a score=6552.000000 s hg38.chr2_GL582966v2_alt 96127 2 + 96131 AT s panTro4.chr2B 153208947 2 + 247518478 AT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 38416730 2 + 135000294 AT i ponAbe2.chr2b C 0 C 0 s rheMac3.chr12 11980239 2 + 106825570 AT i rheMac3.chr12 C 0 C 0 s macFas5.chr12 37683334 2 + 132586672 AT i macFas5.chr12 C 0 C 0 s papAnu2.chr12 11340514 2 + 104110932 AT i papAnu2.chr12 C 0 C 0 s chlSab2.chr10 34441724 2 + 128595539 AT i chlSab2.chr10 C 0 C 0 s calJac3.chr6 87925024 2 - 158406734 AT i calJac3.chr6 C 0 N 0 s mm10.chr2 49772148 2 + 182113224 AT i mm10.chr2 C 0 N 0 a score=3822.000000 s hg38.chr2_GL582966v2_alt 96129 2 + 96131 AT s panTro4.chr2B 153208949 2 + 247518478 AT i panTro4.chr2B C 0 N 0 s ponAbe2.chr2b 38416732 2 + 135000294 AT i ponAbe2.chr2b C 0 N 0 s rheMac3.chr12 11980241 2 + 106825570 AT i rheMac3.chr12 C 0 N 0 s macFas5.chr12 37683336 2 + 132586672 AT i macFas5.chr12 C 0 N 0 s papAnu2.chr12 11340516 2 + 104110932 AT i papAnu2.chr12 C 0 N 0 s chlSab2.chr10 34441726 2 + 128595539 AT i chlSab2.chr10 C 0 N 0