##maf version=1 scoring=roast.v3.3 a score=5595.000000 s hg38.chr4_KI270790v1_alt 0 4 + 220246 GAAT s panTro4.chr4 21386400 4 + 193495092 gaat i panTro4.chr4 N 0 C 0 s ponAbe2.chr4 21563189 4 + 198332218 gaat i ponAbe2.chr4 N 0 C 0 s nomLeu3.chr20 20176242 4 - 85365473 gaat i nomLeu3.chr20 N 0 C 0 s papAnu2.chr5 16276704 4 + 178775436 GAAT i papAnu2.chr5 N 0 C 0 s canFam3.chr3 3702572 4 - 91889043 gaat i canFam3.chr3 N 0 C 0 a score=161387.000000 s hg38.chr4_KI270790v1_alt 4 109 + 220246 TCATGACATAAACTTCATGAACGGACTTAACACACAGCATGTTCTATCAAGTGTCAGCTC---TTGCTCTTTTTCTttgatctctctacttggaggcttcacaagaatatca s panTro4.chr4 21386404 109 + 193495092 tcatgacataaacttcatgaacggacttaacacacagcatgttctatcaagtgtcagctc---ttGCTCTTTTTCTttgatctctctacttggaggcttcacaagaatatca i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21563193 109 + 198332218 tcatgacataaacttcatgaacggacttaacacacagcatgttctatcaagtgtcagctc---ttGCTCTTTTTCTttgatctctctacttggaagcttcacaataatatca i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20176246 109 - 85365473 tcatgacataaacttcatgaacggacttaacacatagcaTGTCCTATCCAGTGTCAGCTG---TTGCTCTTTTTCTttgatctctctacttggaggcttcacaagaatatca i nomLeu3.chr20 C 0 C 0 s papAnu2.chr5 16276708 109 + 178775436 TCATGACATAAACTTCATGAACGGACTTAACACATCGCATGTTCTATCAAGTGTCAgctc---ttactctttttctttcagctctcTACTTGGAGGCTTCACAAGAATATCA i papAnu2.chr5 C 0 C 0 s calJac3.chr3 21111443 109 - 190850796 tcatgacataaacttcatgaatggacttaacacacaacatgttctgtgaagtgtcagctc---tTGTTcttcttctttgagctctctacttggaagtttcacaagaatataa i calJac3.chr3 N 0 C 0 s canFam3.chr3 3702576 110 - 91889043 ccgtgatataaact--gtgattagacatggagtctagtatatTCCATGCAGTGGCAGATCTTATTATTCCTTTTCTTTGATTTCTTTACTTAGAAGTACCACAAGAATCTCG i canFam3.chr3 C 0 C 0 a score=8886.000000 s hg38.chr4_KI270790v1_alt 113 4 + 220246 aaaa- s panTro4.chr4 21386513 4 + 193495092 aaaa- i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21563302 4 + 198332218 aaaa- i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20176355 4 - 85365473 aaaa- i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16641047 4 + 184069350 AAAG- i rheMac3.chr5 N 0 C 0 s macFas5.chr5 20683323 4 + 189454096 AAAg- i macFas5.chr5 N 0 C 0 s papAnu2.chr5 16276817 4 + 178775436 AAAA- i papAnu2.chr5 C 0 I 331 s chlSab2.chr27 19753290 4 - 48547382 aaAG- i chlSab2.chr27 N 0 C 0 s calJac3.chr3 21111552 4 - 190850796 aaaa- i calJac3.chr3 C 0 I 1 s canFam3.chr3 3702686 4 - 91889043 -AAAT i canFam3.chr3 C 0 C 0 a score=505019.000000 s hg38.chr4_KI270790v1_alt 117 153 + 220246 taacatatctaaaactgaattcatcctg-ttccctaggactacttgccatgccactactcccctaacttctctaactcaggaataacatca---------------------------------------tcatatcaaaaatctggttgtagggttgtcatctaattattcc----------------------tttcttgcattgcccaattg----- s panTro4.chr4 21386517 153 + 193495092 taacatatctaaaactgaattcatcctg-ttccctaggactacttgccatgccactactcccctaacttctctaactcaggaataacatca---------------------------------------tcatatcaaaaatctggttgtagggctgtcatctaattattcc----------------------tttcttgcattgcccaattg----- i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21563306 153 + 198332218 taacatatctaaaactgaattcatcctg-ttccctaggactacttgccatgccactactcccctaacttctctaactcaggaataacatca---------------------------------------tcatatcaaaaatctggttgtagggctgtcatctaattattcc----------------------tttcttgcattgcccaattg----- i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20176359 153 - 85365473 taacatatctaaaactgaattcatcctg-ttccctaggactacttgccatgcctctactcccctaacttctctaactcaggaacaacatca---------------------------------------tcatatcaaaaatctggttgtagggctgtcatctaattattcc----------------------tttcttgcattgcccaattg----- i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16641051 153 + 184069350 taacatatctaaaactgaattcatcctg-ttccctaggactacttgccatgcctctactcccctaacttctctaactcaggaataaaatca---------------------------------------tcatatcaaaaatctggctgtagggctatcatgtaattattcc----------------------tttcttgcattgcccagttg----- i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20683327 153 + 189454096 taacatatctaaaactgaattcatcctg-ttccctaggactacttgccatgcctctactcccctaacttctctaactcaggaataacatca---------------------------------------tcatatcaaaaatctggctgtagggctatcatgtaattattcc----------------------tttcttgcattgcccagttg----- i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16277152 153 + 178775436 taaCATATCTAAAACTGAATTCATCCTG-TTCCCTAGGACTACTTGCCATGCCTCTACTCCCCTAACTTCTCTAACTCAGGAATAACATCA---------------------------------------TCATATCAAAAATCTGGTTGTAGGGCTATCATCTAATTATTCC----------------------TTTCTTGCATTGCCCAGTTG----- i papAnu2.chr5 I 331 C 0 s chlSab2.chr27 19753294 153 - 48547382 TAACCTATCTAAAACTGAATTCATCCTG-TTCCCTAGGACTACTTGCCATGCCTCTACTCCCCTAACTTCTCTAACTCACGAATAACATCA---------------------------------------TCATATCAAAAGTCTGGTTGTAGGGCTATCATCTAATTATTCC----------------------TTTCTTGCATTGCCCAGTTG----- i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21111557 152 - 190850796 taccatatct-aaactgaatccatccta-ttccctagaacaatctgccatgcccctactcacctaacttctctaactcaggaatgacatca---------------------------------------tcatagccaaaatctgggtgtagggctgtcatctaattcttcc----------------------tttcctgcattgcccagttg----- i calJac3.chr3 I 1 C 0 s canFam3.chr3 3702690 217 - 91889043 GAATATGTTTAAAACTGAAATCATCCCATTTCCCCCAAACTGTTGGCCATGCCCCCA--CCTCTGTCTTCACTTACTCAGGAATGATactaccaccaccaccaccaccaccaccatcatcatcaTCTAATTCATATTAGAAACCTGAGTGTAGATAT-TCTTCTAATTCTTCCttttttttttttttttttttttttttttGCATTGCCCGATCTGTCCA i canFam3.chr3 C 0 C 0 a score=355619.000000 s hg38.chr4_KI270790v1_alt 270 97 + 220246 caagtctcagagtggctgcctcaaaaatatatcttga--ctattcattatcttcacccaaagaaccacctcctccaatttg---gactactg--------aaatgccttc s panTro4.chr4 21386670 97 + 193495092 caagtctcagagtggctgcctcaaaaatatatcttga--ctattcattatcttcacccaaagaaccacctcctccaatttg---gactactg--------aaatgccttc i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21563459 97 + 198332218 caagtctgagagtgactacctcaaaaatatatcttga--ctattcattatctttacccgaagaaccacctcctccaatttg---gactactg--------aaatgccttc i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20176512 97 - 85365473 caagtctcagaatggccacctcaaaaatatatcttga--caattcattatcttcacccaaagaaccacctcctccaatttg---gactactg--------aaatgccttc i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16641204 97 + 184069350 caagtctcagagtggctatctcaaaaatatatcttga--ctattcattatcttcaccaaaagaaccatctcctccaatctg---gactactg--------aaatgccttc i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20683480 97 + 189454096 caagtctcagagtggctatctcaaaaatatatcttga--ctattcattatcttcaccaaaagaaccatctcctccaatctg---gactactg--------aaatgccttc i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16277305 97 + 178775436 CAAGTCTCAGAGTGGCTATCTCAAAAATATATCTTGA--CTATTCATTATCTTCACCAAAAGAACCATCTCCTGCAATCTG---GACTACTG--------AAATGCCTTC i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19753447 97 - 48547382 CAAGTCTCAGAGTGGCTATCTCAAAAATATATCTTGA--TTATTcattatcttcaccaaaagaaccatctcctccaatctg---gactactg--------aaatgccttc i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21111709 97 - 190850796 caagtctcagagtgactatctcaaaaatatacctcga--ctattcattatcttcacccaaagaaccacctcctctgatctg---gactactg--------aaatgccttc i calJac3.chr3 C 0 C 0 s mm10.chr5 49106488 97 + 151834684 CAATTCTCAGTGTGTCCATCTCTAAAATATGGTTTGACTCTATTCACTATCCTAGTCCAAAAGCTTACCATGTCCTATCTGAAAGAACACGG--------GAATG----- i mm10.chr5 N 0 C 0 s canFam3.chr3 3702907 101 - 91889043 CAAGTCTGAGAATGCTTATCTCAAAACTGCATCTCAATTCTATTCACTATCTC------AGGCACCACCAGCTCTAGTCTA---GACTACTGAGTTTACAAAATGCTCTC i canFam3.chr3 C 0 I 187 a score=2303644.000000 s hg38.chr4_KI270790v1_alt 367 653 + 220246 ctaagt----------gctctctccaatttcattcttaatca-tctcttacctttctct-tcatagcagccagagtaatTTCTA--CCCATGCAATGGATGGAAGTTGTTTCAATG----ATGTGTCTTTCTCAGATGTTCCAGAACAATGTGGAAAGCATGTGTGAATTGTACAAAAGCATCCTCATCCATGGAGAGCATTGTAATA--AAA-----------------AAAAAAAAGCT-----------CCATTT-AATAGTTCTTAGAAGCA--GCTGTCTTTCAAGGCATGATAC---CAACTCTACCTCCTCTAGAGGGTGATGGGGAA-ACATA--GCAGTTTTGAGAGACAATTTAAACACTAATTACTTCAACATGTGTCTGTTATAGTTACTGCTGCATTAATAGAGGCAAATAAGTTGACAGGTGATTGTAAAATACAAGACTATTTTAATATAATATGTGTTAGGATATTTTACTTCAGTCTACACATAATCATCCCCCATGCCAATTGACTGAGGAGATTCATTTAACACTTCAGAGACTCCAGGAAAAAAAAAATTGCAGGCACCACATTTTTTAACCTCTTTATGAGAGCTTTCTAAATGAATAACATTATTGTACAAAATGTTTTAGGCAAATATGTGTAGAGCAAAATACATTTTCACCTGCCACCGTATATTCTGCAGCCTCAACtttt-ttt s panTro4.chr4 21386767 651 + 193495092 ctaagt----------gctctctccaatttcattcttaatca-tctcttacctttctct-tcatagcagccagagtaatTTCTA--CCCATGCAATGGATGGAAGTTGTTTCAATG----ATGTGTCTTTCTCAGATGTTCCAGAACAATCTGGAAAGCATGTGTGAATTGTACAAAAGCATCCTCATCCATGGAGAGCATTGTAATA--AAA-----------------AAAAAAAGGCT-----------CCATTT-AATAGTTCTTAGAAGCA--GCTGTCTTTCAAGGCACGATAC---CAACTCTACCTCCTCTAGAGGGTGATGGGGAA-ACATA--GCAGTTTTGAGAGACAATTTAAACACTAATTACTTCAACATGTGTCTGTTATAGTTACTGCTGCATTAATAGAGGCAAATAAGTTGACAGGTGATTGTAAAATACAAGACTATTTTAATATAATATGTGTTAGGATATTTTACTTCAGTCTACACATAATCATCCCCCATGCCAATTGACTGAGGAGATTCATTTAACACTTCAGAGATTCCAGGAAAAAAAA--TTGCAGGCACCACATTTTTTAACCTCTTTATGAGAGCTTTCTAAATGAATAACATTATTGTACAAAATGTTTTAGGCAAATATGTGTAGAGCAAAATACATTTTCACCTGCCACCGTATATTCTGCAGCCTCAACtttt-ttt i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21563556 650 + 198332218 ctaagc----------gctctctccaatttcattcttaatca-tctcttaactttctct-tcatagcagccagagtaatTTCTA--CCCATGCAATAGATGGAAGTTGTTTCAATG----ATGTGTCTTTCTCAGATGTTCCAGAACAATCTGGAAAGCCTGTGTGAATTGTACAAAAGCATCCTCATCCATGGAGAGCATTGTAATA--AAA-----------------AAAAAAAAGCT-----------CCATTT-AATAGTTCTTAGAAGCA--GCTGTCTTTCAAGGCACCATAC---CAACTCTACCTCCTCTAGAGGGTGATGGGGAA-ACATA--GTAGTTTTGAGAGACAATTTAAACACTAATTACTTCAGCATGTGCCTGTTATAGTTACTGCTGCATTAATAGAGGCAAATAAGTTGACAGGTGATTGTAAAATACAAGAC--TTTTAATATAATATGTGTTAGGATACTTTACTTCAGTCTACACATAATCATCCCCCATGCCAATTGACTGAGGAGATTCATTTAACACTTCAGAGACTCCAGGAAAAAAAAAATTGCAGGCACCACATTTTTTAACCTCTTTATGAGAGCTTTCTAAATGAATAACATTATTGTACAAAATGTTTTAGGCAAATATGTGTAGAGCAAAATACATTTTCACCTGCCACCATATATTCTGCAGCCTCAAC-ttt-ttt i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20176609 652 - 85365473 ctaagt----------gctctctccaatttcattcttaatca-tctcttacctttctct-tcatagcagccagagtaatTTCTA--CCCATGCAATGGATGGAAGTTGTTTCAATG----ATGTGTCTTTCTCAGATGTCCCAGAACAATCTGGAAAGCATGTGTGAATTGTACAAAAGCATCCTCATCCATGGAGAGCATTGTAATA--AAA-----------------AAAAAAAAGCT-----------CCATTT-AATTGTTCTTAGAAGCA--GCTGTCTTTCAAGGCACGATAC---CAACTCTACCTCCTCTAGAGGGTGATGGGGAA-ACATA--GTAGCTTTGAGAGACAATTTAAACACTAATTACTTCAACATGTGTCTGTTATAGTTACTGCTGCATTAATAGCGGCAAATAAGTTGACAGGTGATTGTAAAATACAAGACTATTTTAATATAATATGTGTTAGGATATTTTACTTCAGTCTACACATAATCATCCCCCATGCCAGTTGATTGAGGAGATTCATTTAACACTTCAGAGACTCCAGGAAAAAAAA-ATTGCAGGCACCACATTTTTTAACCTCTTTATGAGAGCTTTCTAAGTGAATAACATTACTGTACAAAATGTGTTAGGCAAATATGTGTAGAGCAAAATACATTTTCACCTGCCACCGTATATTCTGCAGCCTCAACtttt-ttt i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16641301 668 + 184069350 ctaagt----------gctctcttcaatttcattcttcatca-tctcttacctttctct-tcatagcagccagagtaatTTCTA--CCCATGAAATGGATGAAAGTTGTTTCAATG----ATACGTCTTTCTCAGATGTTCCAGAACAATCTGGAAAGCGTGTGTGAATTGTACAAAAGCATCCTCATCCATGGAGAGCATTGTAATA--Aaaaacaaaaca---aaac-aaaacaaaTCT-----------CCGTTT-AATAGTTCTTAGAAGCA--GCTTTCTTTCATGGCATTGTACCATCAAACCTACCTCCTCTAGAGGGTGATGGGGAA-ATACA--GTAGTTTTGAGAGACAATTTAAACACTAATTACTTCAACCTGTGTCTGTTATAGTGGCTGCTGCATTAATAGAGGCAAATAAGTTGACAGGTGATTGCAAAATACAAGACTATTTTAATATAATATGTGTTAGGATATTTTACTTCAGTCTACACATAATCATCCCCCATGCCAATTGACTAAGGAGATTCATTTAACACTTCAGAGACTCCACGAAAAAAAA-AATGCAGGCACCACATTTTTTAACGTCTTTATGAGAGCTTTCTAAATTAATAATATTATTGTACAAAATGTTCTAGGCAAATATGCATAGAGCAAAATACATTTTCACCTGCCACCATATATTCTGCAGCCTCAACtttt-ttt i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20683577 668 + 189454096 ctaagt----------gctctcttcaatttcattcttcatca-tctcttacctttctct-tcatagcagccagagtaatTTCTA--CCCATGAAATGGATGAAAGTTGTTTCAATG----ATATGTCTTTCTCAGATGTTCCAGAACAATCTGGAAAGCGTGTGTGAATTGTACAAAAGCATCCTCATCCATGGAGAGCATTGTAATA--AAAAACAAAACA---AAAC-AAAACAAATCT-----------CCGTTT-AATAGTTCTTAGAAGCA--GCTGTCTTTCATGGCATTGTACCATCAAACCTACCTCCTCTAGAGGGTGATGGGGAA-ATACA--GTAGTTTTGAGAGACAATTTAAACAGTAATTACTTCAACCTGTGTCTGTTATAGTGGCTGCTGCATTAATAGAGGCAAATAAGTTGACAGGTGATTGCAAAATACAAGACTATTTTAATATAATATGTGTTAGGATATTTTACTTCAGTCTACACATAATCATCCCCCATGCCAATTGACTAAGGAGATTCATTTAACACTTCAGAGACTCCAGGAAAAAAAA-ATTGCAGGCACCACATTTTTAAACGTCTTTATGAGAGCTTTCTAAATTAATAATATTATTGTACAAAATGTTCTAGGCAAATATGCATAGAGCAAAATACATTTTCACCTGCCACCATATATTCTGCAGCCTCAACtttt-ttt i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16277402 669 + 178775436 CTAAGT----------GCTCTCTTCAATTTCATTCTTAATCA-TCTCTTACCTTTCTCT-TCATAGCAGCCAGAGTAATTTCTA--CCCATGAAATGGATGAAAGTTGTTTCAATG----ATATGTCTTTCTCAGATGTTCCAGAACAATCTGGAAAGCGTGTGTGAACTGTACAAAAGCATCCTCATCCATGGAGAGCATTGTAata--aaaaacgaaaca---aaacaaaaaaaaacct-----------ctgttt-AATAGTTCTTAGAAGCA--GCTGTCTTTCATGGCATTGTACCATCAAACCTACCTCCTTTAGAGGGTGATGGGGAA-ATACA--GTAGTTTTGAGAGACAATTTAAACACTAATTACTTCAACCTGTGTCTGTTATAGTGGCTGCTGCATTAATAGAGGCAAATAAGTTGACAGGTGATTGCAAAATACAAgactattttaatataatatgtgTTAGGATATTTTACTTCAGTCTACACATAATCATCCCCCATGCCAATTGACTAAGGAGATTCATTTAACACTTCAgaaactccaggaaaaaaaa-attgcaggcaCCACATTTTTTAACGTCTTTATGAGACCTTTctaaattaataatattattgtACAAAATGTTCTAGGCAAATATGCATAgagcaaaatacatttttacctGCCACCATATATtctgcagcctcaactttt-ttt i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19753544 672 - 48547382 ctaagt----------gctctcttcaatatcattcttaatca-tctcttacctttctct-tcatagcagccagagtaatTTCTA--CCCATGAAATGGATGGAAGTTGTTTCAATG----ATATGTCTTTCTCAGATGTTCCAGAACAATCTGGAAAGCGTGTGTGAATTGTACAAAAGCATCCTCATCCATGGAGAGCATTGTaata--aaaaacaaaacaaacaaacaaacaaaaaacT-----------CCATTT-AATAGTTCTTAGAAGCA--GCTGTCTTTCATGGCATTGTACCATCAAACCTACCTCCCCTAGAAGGTGATGGGGAA-ATACA--GTAGTTTTGAGAGACAATTTAAACACTAATTACTTCAACCTGTGTCTGTTATAGTGGCTGCTGCATTAATAGAGGCAAATAAGTTGACAGGTGATTGCAAAATACAAGACTATTTTAATATAATATGTGTTAGGATATTTTACTTTAGTCTACACATAATCATCCCCCATGACAATTGACTGAGGAGATGCATTTAACACTTCAGAGACTCCAGGAAAAAAAA-ATTGCAGGCAGCACATTTTTTAACGTCTTTATGAGAGCTTTCTAAATTAATAACATTATTGTACAAAATGTTTTAGGCAAATATGTGTAGAGCAAAATACATTTTCATCTGCCACTGTATATTCTGCAGCCTTAACtttt-ttt i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21111806 646 - 190850796 ctaaat----------gctctttccaatctcattctttatca-tct-----ctttctct-tcacagcagccagcgtaatTTCTA--CTCATGAAATGGATGGAAGTTGTTTCA-------GTATGTGTTTCTCAGATATTCCAAAACAAGCTGGAAAGCACATGTGAATTGTAAAAAAAAATCCTCATTCATGGAGGGAATTATAATCTTAAA-----------------ACAACCCTACT-----------TTGTTA-AATAGTTCTTAGAAGTG--GATGTCTTTCATGGCACTGTACCAACATACCTACTTCCTATGGATGGTGATGGGGAA-ACATC--GCAGTTTTGAGAGACTATTTAAACACTAATTACTTCAACCTGTGTCTATCATAGTTACTGCTGCATTAACAGAGGCAAATAAGGTGACAGGTGATTGCAAAATACAAGACTATTTTAATATAATATGTATTAGGATATTTTACTTTAGTCTACACATAATCATTCCCCACACCAATTGACTAAGGAGATTAATTTAACAATTCAGAGATTCTTGGAAAAAA---ATTACAGGCACCACATTTTTTAACCTC--TATGAGAGCTTTCTAAATGAATACTATCATTGTACAAAATATTTTAGGCATGTATGCATAAAGCAAAATACAGTTTCAACTGCCACAGTATATTCTGCAGCCTCAACttttgttt i calJac3.chr3 C 0 C 0 s mm10.chr5 49106585 627 + 151834684 ------------------TCTGACACATCTCCTTCTCAACTACTGTTTTACCCTTCTCT-GTA-GGAAGCCAAACAAATGAGTA-----ATGGAGTGTACAG-AGTTGCTTCAGTG----ATCTATCATTTTCAGAGGCCCTAACAGAATCTTGAAAGATTGTATGAATTACAAAGGTAAATTTACATTC-----------TCTTATA--GAAAATA-------------GAAAAATAGCCGTAGTTGCAGGCCATTTAAATCGCTCTTGGAAGCA-TGAAGACTT--GAGACACTGTTTAAACACAT-----TCCTTTAGAGGTTAATGGTGAATATAGC--ACACTTTTGAGAGACACTATAAACACTAATTACTGCAACCTGTGTCAGTCACAGTCAC-ACTGCATTAATAGAGGT-AATGAGTTGACAGGTGGTCCCAAAATAAGAGACTCTTTTAATGTAATATGCATTAGGGTACTTCACTTCAGTCTACACCTTTGCATGTGCGAAGTTTATCAACAAAGGTAGCATGGTTAACTGCTCAGAGACTCCAGGAAAGAAATAACTATGCACACTGCAGCTTCATATCTCTGAATGAATGCTTTACAA-TGAATAATATTGTTGTATCACAT-TTTAAAATTAAT-TGCATAAAGCAAAATGCCTTTTCACCTGTCA------------TAGCATGAGCTTTG-TTT i mm10.chr5 C 0 C 0 s canFam3.chr3 3703195 647 - 91889043 ctgagtcacccaggcaccccTCTCTACTTTTATTCTTAACTA-CCTTCCACTTTTTTTTCTCACAGCAGCCAGATTAATTTCTATACTCATGAAGTGGATGGAAGTTGTTTCAATGATGTATGTGTCTTTTTCAGAGGTTCCAG-ACAATCCGGCAA--ATGTGCAAATTG--AAAATCCACACTCACTTGTGATGaatattatttaa--aaa-----------------aaaaaaGTGGC-----------CCATTTAAATACCTCTTAGAAGCCCTGCTGTCTTTCAAGACACTGTGTCAACACATCTACCTCCTCTAGGGGGTGATGGGGAA-ATGTAACACACTTTTGAGAGACATTTTAAACACTAATTACTTCAACCTGTGTCTATCATAGTTAACACTGCATTAATAGAAGTAAGTGAGTTGACAGGTGATTGCAAAATAAAAGAC--TTTTAATATAATATGCGTTA--ATATTTTACCTCAGTCTACATATTATCATGTTCCAAGCCCACTGACTAAGGAGTTGCATTTAACCCTTCCGAGAGTCCAGGAAAGAACTAATAGTAGGCACTGAATTCTCAAACCTCTTCATGAATGCTTTCTAAAGCAATAATATCATGATAC---ATTTTTTTAGCAATTATAAGTAAAGCAAGATAGATTTTCATCTGTCATGGCATGTTC-------------------- i canFam3.chr3 I 187 C 0 a score=43093.000000 s hg38.chr4_KI270790v1_alt 1020 16 + 220246 ttc-ttctagagacaga s panTro4.chr4 21387418 16 + 193495092 ttc-ttctagagacaca i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21564206 16 + 198332218 ttc-ttctagagacaga i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20177261 16 - 85365473 ttc-ttctagagacaga i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16641969 17 + 184069350 ttctttctagagacaga i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20684245 17 + 189454096 ttctttctagagacaga i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16278071 17 + 178775436 ttctttctagagacaga i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19754216 17 - 48547382 ttctttctagagacaga i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21112452 17 - 190850796 ttctttctagagacaga i calJac3.chr3 C 0 C 0 s canFam3.chr3 3703842 4 - 91889043 -------------CAGA i canFam3.chr3 C 0 C 0 e mm10.chr5 49107212 0 + 151834684 C a score=406115.000000 s hg38.chr4_KI270790v1_alt 1036 137 + 220246 gtcttgccctgtcacccaggctggtgca-----ctcatagctcactgcagcctctaactcctgggctcaagcgatcttccggcctcctgagtagctatgactaaatgtgcatgccaccacacacagcTTACAGTATATTCTT s panTro4.chr4 21387434 137 + 193495092 gtcttgccctgtcacccaggctggtgta-----ctcatagctcactgcagcctctaactcctgggctcaaatgatcttccgacctcctgagtagctatgactaaatgtgcaggccaccacacacagcTTACAGTATATTCTT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21564222 137 + 198332218 gtcttgccttgtcacccaggctggtgca-----ctcttagctcactgcagcctctaactcctgggctcaagcggtcttccagcctcctgagtagctatgactaaaggtgcctgccaccacacccagctTACAGTATATTCTT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20177277 137 - 85365473 gtcttgccctgtcacccaggctggtgca-----ctcatagctcactgcagcctctaactcctgggctcaagcgatcttccggcctcctgagtagctatgactaaaggtgcatgccaccacacccagcTTACAGTATATTCTT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16641986 142 + 184069350 gtcttgccctgtcacccaggctggtacactcacctcacagctcactgaagcctctaactcctgggctcaagcgatcttccagcctcctaagtagctatgactacaggtgcatgccaccatacccagctTACAGTATATTCTT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20684262 137 + 189454096 gtcttgccctgtcacccaggctggtgca-----ctcacagctcactgaagcctctaactcctgggctcaagcgatcttccagcctcctaagtagctatgactacaggtgcatgccaccatacccagctTACAGTATATTCTT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16278088 137 + 178775436 gtcttgccctgtcacccaggctggtgca-----ctcacagctcactgaagcctctaactcctgggctcaagcgatcttccagcctcctaactagctatgactacaggtgcatgccaccatacccagcttacAGTATATTCTT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19754233 137 - 48547382 gtcttgccctgtcatccaggctggtgcg-----ctcacagctcactgaaacttctaactcctgggctcaagcgatcttccagcctcctcagtagctatgactacaggtgcatgccaccacactcagctTACAGTATATTCTT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21112469 137 - 190850796 gtcttgttctgtctcccagcctggtgca-----atcatagctcactgcagcctccaactagtgagttcaagtgatcttctggcctcctgagtagctatgaccacaggtgcatgccaccacgcccagcTTACAGTATATTCTT i calJac3.chr3 C 0 C 0 e mm10.chr5 49107212 0 + 151834684 C e canFam3.chr3 3703846 0 - 91889043 C a score=8190.000000 s hg38.chr4_KI270790v1_alt 1173 2 + 220246 TA s panTro4.chr4 21387571 2 + 193495092 TA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21564359 2 + 198332218 TA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20177414 2 - 85365473 TA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16642128 2 + 184069350 TA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20684399 2 + 189454096 TA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16278225 2 + 178775436 TA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19754370 2 - 48547382 TA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21112606 2 - 190850796 TA i calJac3.chr3 C 0 C 0 s canFam3.chr3 3703846 2 - 91889043 TA i canFam3.chr3 C 0 C 0 e mm10.chr5 49107212 0 + 151834684 C a score=1182083.000000 s hg38.chr4_KI270790v1_alt 1175 350 + 220246 TGACTAATCCTTTCTACCCAAAGCAGTAAAAG--------AAAA-----------AAATAAGACA--A--AAAATGCAAACTGCTCCTCAAATGCTCCTACCCTTACCCCATCCATCtgtagcaaagtggctaaaatcatgagctctggagataaatcctacctctactagttactacctgtccaacc-ataggcaaaattctccattcctctaatgttaaaagcgtt-atctgtaaagtgaggatgaaaaaaaaatcacaatatgtatttcattagattattgaatggattaaataagttgatatttgtaaagtacttagaacattgcttag----cacatagt-aaaaaatatatatatttgcttatttttATTCCTG s panTro4.chr4 21387573 350 + 193495092 TGACTAATCCTTTCTACCCAAAGCAGTAAAAG--------AAAA-----------AAATAAGACA--A--AAAATGCAAACTGCTCCTCAAATGCTCCTACCCTTACCCCATCCATCtgtagcaaagtggctaaaatcatgagctctggagataaatcctacctctactagttactacctgtccaatc-acaggcaatattctccattcccctaatgttaaaagcgtt-atctgcaaagtgaggatgaaaagaaaatcataatatgtatttcattaaattattgagtggattaaataagttgatatttgtaaagtacttagaacattgcttag----cacatagt-aaaaaatatatatatttgcttatttttATTCCTG i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21564361 349 + 198332218 TGACTAATCCTTTCTACCCAAAGCAGTAAAAG--------AAAA-----------AAATAAGACA--A--AAAATGCAAACTGCTCCTAAAATGCTCCTACCCTTACCCCATCCATCtgtagcaaagtggctaaaatcatgagctctggagataaatcctacgtctgctagttactacctgtccaacc-ataggcaaaattttccattcctctaatgttaaaagcatt-gtctgtaaaatggggatgaaaag-aaatcataatatgtatttcattagatcattgagtggattaaataag-tgatatttgtaaagcacttagaacattgcttag----cacatagtaaaaaaaaatatgtattTGCTTATTTTTATTCCTG i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20177416 348 - 85365473 TGACTAATCCTTTCTACCCAAAGCAGTAAAAG--------AAAA-----------AAATAAGACA--A--AAAATGCAAACTGCTCCTCAAATGCTCCTACCCTTACCCCATCCATCtgtagcaaagtggctaaaatcatgagctctggagataaatcctacctctactagttactacctgtccaacc-ataggcaaaattctccattcctctaatgttaaaagcgtt-atctgtaaagtagggatgaaaa--aaatcgtaatatgtatttcattagattattgagcggattaaataagttgatatttgtaaagtacttagaacattgcttag----cacatact-aCAAAATATATGCATTTGCTTATTTTTATTCCTG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16642130 347 + 184069350 TGACTAATCCTTTCTACCCAAAGTAGTAAAAG--------AAAA-----------AAAAAAGACA--A--AAAATGCAAACTGCTCCTCAAATGCTCCTAAGCTTACCTCATCCATCtgtagcaaagtggctaaaatcacgagccgtggagataaatcctacctctactagttactacctgtccaacc-ataggcaaaattctccattcctctaatgttaaaagcctt-atctgtaaagtgagaatgaaaaa-aaatcataatatgtatttcattagatta---agtggattaaataagttgatatttgtaaagtacttagaacattgcttag----cacatagtaaaaaaatatatgtatttgcttatttttATTCCTG i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20684401 346 + 189454096 TGACTAATCCTTTCTACCCAAAGTAGTAAAAG---------AAA-----------AAAAAAGACA--A--AAAATGCAAACTGCTCCTCAAATGCTCCTAAGCTTACCTCATCCATCtgtagcaaagtggctaaaatcacgagccgtggagataaatcctacctctactagttactacctgtccaacc-ataggcaaaattctccattcctctaatgttaaaagcctt-atctgtaaagtgagaatgaaaaa-aaatcataatatgtatttcattagatta---agtggattaaataagttgatatttgtaaagtacttagaacattgcttag----cacatagtaaaaaaatatatgtatttgcttatttttATTCCTG i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16278227 346 + 178775436 TGACTAATCCTTTCTACCCaaagtagtaaaag---------aaa-----------aaaaaaaaga--a--aaaatgcaaactgCTCCTCAAATGCTCCTAACCTTACCTCATCTATCTGTAGCAAAGTGGCTAAAATCATGAGCCCTGGGGATAAATCCTACCTCTACTAGTTACTACCTGTCCAACC-ATAGGCAAAATTCTCCATTCCTCTAATGTTAAAagcctt-atctgtaaagtgaggatgaaaaa-aaatcataatatgtATTTCATTAGATTA---AGTGGATTAAATAAGTTGATatttgtaaagtacttagaacattgcttag----cacatagtaaaaaaatatatgtatttgcttatttttattcctg i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19754372 355 - 48547382 TGACTAATCCTTTCTACCCAAAGTAGTaaaaggaaaaaaaaaaa-----------aaaaaagaca--a--aaaaTGCAAATTGCTCCTCAAATGCTCCTAACCTTACCTCATCCATCtgtagcaaagtagctaaaatcatgaaccctggggataaatcctacctctactagttactacctgtccaacc-ataggcaaaattctccattcctctaatgttaaaagcctt-atctgtaaactgaggatgaaaaa-aaatcataatatgtatttcattagatta---agtggattaaataagttgatatttgtaaagtacttagaacattgcttag----cacatagtaaaaaaatatatgtatttgcttatttttATTCTTG i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21112608 350 - 190850796 TGACTAATTCTTTCTACCCAAAGCAGTAAAAG--------AAAA-----------TAATAAGACA--A--AAAATGCAAACTGCTCCTAAAATGCTCCTACCCTTATCCCTTCTCTCtgtagcaaagtggctaaaatcatgagctctggggataaatccttcctctactagttactacctatctgact-ataggcaaaattctcaattcctctaatgttaaaagcctt-atctgtaaagtggggatgaaaaa-aaatcataatgtatatttcatcaggttattgagtagattaaatcagttggtatttgtaaagtacttagatcgttgcttag----cacatagtaaaagaatatatgtatttgcttattTTCATTCCTG i calJac3.chr3 C 0 C 0 s mm10.chr5 49107212 328 + 151834684 TGAATTATTTATTTTATCCAAAGGAATGAAAT--------AAAAGTTAGATTAAGAAATAATACAGTG--AAAATGCAAACTAGACATCAATTCTTCTATCCCATAGCT--TCTGTCATTAGCAAAAC--TTTCAACCATGCATGTTGGAGCCAACTCCTACCTGTTTGAGCT-----CAGTTTAACC-TCAGGTA----------------TGACATTGGATATTTTGACCAATAAATTGGAGATGAA----AAACCATGATGATTGCATCATAAGGTTATTAAATGAA--AGACATTGCAATATTTATTTAACTCTTAAAACACTTTCTGA----TGCACAGTCAAAG----TTGGCACTTG--TATTTTCACTCCTC i mm10.chr5 C 0 C 0 s canFam3.chr3 3703848 333 - 91889043 TGACTGATCCTCTCTACTCAAAGCAGGAAAAC---------CAA-----------ACATAAGACA--AGGAAAATGCAAACTGGTCCCTAAGTTCTCCTACCCCTACCCCATGCATCTGTAGCAGAGGGGATAAAATA---------------aattcctacttctactagttattacctgtttaacctacaggctacaatttcaaatattctaatgtttgaggtctttatctataaagtacagatgaa----aaatcacaattcctacctcattaggttt--aaatgcattaaacaggttaatatttgcaaagcacctagaacactgcctagaacaaacatagt-aaatgATGTTTGCTTTC---TATGTTTATCCTTG i canFam3.chr3 C 0 I 70 a score=1665436.000000 s hg38.chr4_KI270790v1_alt 1525 585 + 220246 Ttgctaaggtataaatgtttgtgt-----ccctgaaattccatgtgttgaa----tactaacattcaagctgatggtgtcaggagatggggtctttaggaggtgactagataatgaagacggagccccc-ataa-ggggataagtgcccttattaaaaaaaaagggggggacactattcaccaactgcagagagctagctagccccttccaccatgttaggttacagcaagaagattggtcctcattggacatcaagtccagtttgatcttgaacttcccagcctctagaaactgtgagaagta-attttctgt--tatttataaggtaccaagcttatggtattttg---------ttaaagaatcctgaatgaactaagacaCCTATGGTCTTTATTTTTTATGTGTCAATGCCTCTGTGCTAGATGAGGTGATTAATTCTATAGGT----------------------------------tgtgtgtgt--gtgtctgtgtgtgt----TTACCACCGTCAAATGCTATATTTAGTATGAGCATGCACTGTTAACAGTGACTTGATATGATTTAGTCATAAATAATATTCCCTGGAGCCAGG-TTAAATGTAAATATGCATCAATTTTGGTAATTTGAAATGACTT s panTro4.chr4 21387923 584 + 193495092 Ttgctaaggtataaatgtttgtgt-----ccctgaaattccatgtgttgaa----tactaacattcaaggtgatggtgtcaggagatggggtctttaggaggtgactagataatgaagacagagccccctataa-ggggataagtgcccttattaaaaaaaa-gggggggacactattcaccaactgcagagagctagctagccccttccaccatgttaggttacagcaagaagattggtcctcattggacatcaagtccagtttgatcttgaacttcccagcctctagaaactgtgagaagta-attttctgt--tatttataaggtaccaagcttatggtattttg---------ttaaagaatcctgaatgaactaagacaTCTATGG-CTTTATTTTTTATGTGTCAATGCCTCTGTGCTAGATGAGGTGATTAATTCTATAGGT----------------------------------TGTGTGTGT--GTGTCTGTGTGTGT----TTACCACCGTCAAATGCTATATTTAGTATGAGCATGCACTGTTAACAGTGACTTGATATGATTTAGTCATAAATAATATTCCCTGGAGCCAGG-TTAAATGTAAATATGCATCAATTTTGGTAATTTGAAATGACTT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21564710 586 + 198332218 Ttgctaaggtataaatatttgtgt-----ccctgaaaatccatgtgttgaa----tactaacattcaagctgatggtgtcaggagatggggtctttaggaggtgactagataatgaagatggagccccctatga-ggggattagtgcccttatttaaaaaaaaaggagggacactattcaccaactacagagagctagctagccccttccaccatgttaggttacagcaagaagattggtcctcattggacatcaagtccagtttgatcttgaacttcccagcctctagaaactgtgagaagta-attttctgt--tatttataaggtaccaagcttatggtattttg---------ttaaagaatcctgaatgaactaagacaCCTATGGTCTTTATTTTTTATGTGTCAATGCCTCTGTGCTAGATGAGGTGATTAATTCTATAGGT----------------------------------TGTGTGTGT--GTGTCTGTGTGTGT----TTACCACCATCAAATGCTATATTTAGTATGAGCATGCACTGTTAACAGTGACTTGATATGATTTAGTCATAAATAATATTCCCTGGAGCCAGG-TTAAATGTAAATATGCATCAATTTTGGTAATTTTAAATGACTT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20177764 585 - 85365473 Ttgctaaggtataaatatttgtgt-----ccctgaaaatccatgtgttgaa----tactaacattcaagctgatggtgtcaggagatggggtctttaggaggtgactagataatgaagatggagccctctataa-ggggattagtgcccttattaaaaaa---gggggggacactattcaccaaccgcagagagctagctagccccttccaccatattaggctacagcaagaagactggttctcactggacatcgagtccagtttgatcttgaacttcccagcctctagaaactgtgagaagta-attttctgt--tatttataaggtaccaagcttatggtattttg---------ttaaagaatcctgaatgaactaagacaCCTATGGTCTTTATTTTTTATATGTCAATGCCTCTGTGCTAGATGAGGTGATTAATTCTATAGGT----------------------------------tgtatgtgtgggtgtctgtgtgtgt----TTACCATTGTCAAATGCTATATTTGGTATGAGCATGCACTGATAACAGTGACTTGATATGATTTAGTCATAAATAATATTCCCTGGAGCCAGG-TTAAATGTAAATATGCATCAATTTTGGTAATTTGAAATGACTT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16642477 587 + 184069350 Ttgctatggtataaatatttgtgt-----ccctgaaaatccatgtgttgaa----tactaacattcaagctgatggtgttaggagatggggtctttaggaggtggctagataatgaagacggaaccccc-atta-ggggattagtgcccttataaaaaa----gcgggggacactattcaccaactgcagagagctagctagacccttccaccatgttaggttacagcaagaagatcggtcctcattggacatcaagtccactttgatcttcaagttctcagcctctagaaactgtgagaagta-attttctgt--tatttataaggtaccaagcttatggtattttg---------ttaaagaatcctgaatgaactaagacaCCTATGGTCTTTATTTTTTATGTGTCAATGCCTCTGTGCTAGATGAGGTGATTAATTCTATAGGT--------------------------------tgtgtgtgtgt--gtgtctgtgtgtgtgtgCTTACCACTCTCAAATGCTATATTTAGTATAAGCATGCACTAATAAAAGTGACTTGATATGATTTAGTCATAAATAATATTCTCTGGAGCCAGG-TTAAATGTAAATATGCATCAATTTTGGTAATTTGAAATCACTT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20684747 587 + 189454096 Ttgctatggtataaatatttgtgt-----ccctgaaaatccatgtgttgaa----tactaacattcaagctgatggtgttaggagatggggtctttaggaggtggctagataacgaagacggaaccccc-atta-ggggattagtgcccttataaaaaa----gcgggggacactattcaccaactgcagagagctagctagacccttccaccatgttaggttacagcaagaagatcggtcctcattggacatcaagtccactttgatcttcaacttctcagcctctagaaactgtgagaagta-attttctgt--tatttataaggtaccaagcttatggtattttg---------ttaaagaatcctgaatgaactaagacaCCTATGGTCTTTATTTTTTATGTGTCAATGCCTCTGTGCTAGATGAGGTGATTAATTCTATAGGT--------------------------------tgtgtgtgtgt--gtgtctgtgtgtgtgtgCTTACCACTCTCAAATGCTATATTTAGTATAAGCATGCACTAATAAAAGTGACTTGATATGATTTAGTCATAAATAATATTCTCTGGAGCCAGG-TTAAATGTAAATATGCATCAATTTTGGTAATTTGAAATCACTT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16278573 585 + 178775436 ttgctatggtataaatatttgtgt-----ccctGAAAATCCATGTGTTGAA----TACTAACATTCAAGCTGATGGTGTCAGGAGATGGGGTCTTTCGGAGGTGGCTAGATAATGAAGACGGAACCCCC-ATAa-ggggattagtgcccttataaaaaa----ggAGGGGACACTATTCACCAACTGCAGAGAGCTAGCTAGACCCTTCCACCATGTTAGGTTACAGCAAGAAGATCGGTCCTCATTGGACATCAAGTCCACTTTGATCTtcaacttcccagcctctagaaactGTGAGAAGTA-ATTTTCTGT--TATCTATAAAGTACCAagcttatggtattttg---------ttaaagaatcctgaatgaactaagacacctatggtctttattttttatgtatcaaTGCCTCTGTGCTAGATGAGGTGATTAATTCtataggc----------------------------------tgtgtgtgt--gtgtctgtgtgtgtgtgcttaccACTGTCAAATGCTATATTTAGTATGAGCATGCACTAATAACAGTGACTTGATATGATTTAGTCATAAATAATATTCTCTGGGGCCAGG-TTAAATGTAAATATGCATCAATTTTGGCAATTTGAAATGACTT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19754727 585 - 48547382 Ttgctatggtataaatatttgtgt-----ccctgaaaatccatgtattgaa----tactaacattcaagctgatggtgtcaggagatggggtctttaggaggtggctagataatgaaggcggaaccccc-ataa-ggggattagtgcccttataaaaaa----ggaggggacactattcaccaactgcagagagctagctagacccttccaccatgttaggttacagcaagaagatcggtcctcaatggacatcaagtccactttgatcttcaacttcccagcctctagaaactgtgagaagta-attttctgt--tatttataaggtaccaagcttatggtattttg---------ttaaagaatcctgaatgaactaagacaCCTATGGTCTTTATTTTTTATGTGTCAATACCTCTGTGCTAGATGAGGTGATTCATTCTATAGGC----------------------------------tgtgtgtgt--gtgtctgtgtgtgtgtgCTTACCACTGTCAAATGCTATATTTAGTATGAGCATGCACTAATAACAGTGACTTGATATGATTTAGTCACAAATAATATTCTCTGGGGCCAGG-TTAAATGTAAATATGCATCAATTTTGGTAATTTGAAATGACTT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21112958 526 - 190850796 Ttgctatggtataaatttttgtgt-----tcctgacaatccatgtgttgaa----tattaacattaaaattgatggtgtcaggagatggggtctttaggaggtgattagaaaataaagatagagccctc-ataacaaggattagtaccct-------------gataagggcactattcattaactgcagagagctagctagccccttccaacatgttagggcacagcaagaagattggtcctcaatggacatcaagtccgctttgatcttgaacttcccagcctctagaaactgggagaagta-attttctgt--tgtttataaactacaaaacttatagtatttcg---------ttaaagaatcctgaatgaactaagacaACTATGGTCTTTATTTTTTATGTGTCAATGCCTCTGTGGTAGATGAGGTGATTAATCCTATAAGGgtgtgtggtgtgtgtgtgtgagtgtgtgtgtgtgtgtgtgtgt--gtgtgtgtgtgtgtgtgtTTACCACTGTCAAATGCT--------------------------------------------------------------------------------------GTATGCATCAATTTTGGTAATTTGAAATGACTT i calJac3.chr3 C 0 I 2 s mm10.chr5 49107540 516 + 151834684 TTGCTATAGTTTAAATATGTGTGTGTATGGCTTGAAAGC---TGTGTTACAACTTTCATAACACACAGATCCTTAGTGTGATGA----GGGCATTCTAAAAGGGACCATAGAATG---------------CTaa-------------------aaaaaa----aacaaaaaca---------aaaaaaaaaaaCCCAAAAAATCTCTATCACTA---------ACAG--AAAAAACTGACTGCCTCTACATATCAGTTCTATATTTATTTTGAATATGT-AGTTTCCAT-TACCGTGAGGAATGCATTTTGTATTCTGTTTATAGACTATTTATC-TATAGAATTTTGCTTTCTAAATTCCAGAA-CCAGAACAGACAAAAATATTTTTGCTCTTTATTTT-----TGCCAATA-TTGTCTTCTCCCTATGCATATTAAGCCTATAGGA------------------------------------------C--TTCTTTTTGTTTGT----TCACTACTGTCAAATACAGCATTAAATATGCTCATATATACATAGTTCTGTTTTGACATTATTT------AAATACTACCCATGAATGTCGGACTTAAATAAAAGCATCCATGGTCATTGTTGCTTTCAAATA---- i mm10.chr5 C 0 C 0 e canFam3.chr3 3704181 70 - 91889043 I a score=6876.000000 s hg38.chr4_KI270790v1_alt 2110 2 + 220246 AG s panTro4.chr4 21388507 2 + 193495092 AG i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21565296 2 + 198332218 AG i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20178349 2 - 85365473 AG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16643064 2 + 184069350 AG i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20685334 2 + 189454096 AG i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16279158 2 + 178775436 AG i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19755312 2 - 48547382 AG i chlSab2.chr27 C 0 C 0 s mm10.chr5 49108056 2 + 151834684 AG i mm10.chr5 C 0 C 0 e calJac3.chr3 21113484 2 - 190850796 I e canFam3.chr3 3704181 70 - 91889043 I a score=107560.000000 s hg38.chr4_KI270790v1_alt 2112 31 + 220246 TCCTCAATAATATTCACTCATCTTtttcttt s panTro4.chr4 21388509 31 + 193495092 TCCTCAATAATATTCACTCATCTTTttcttt i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21565298 31 + 198332218 TCCTCAATAATATTCATTCATCTTTttcttt i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20178351 31 - 85365473 TCCTCAATAATATTCACTCATCTTTTTCTTT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16643066 31 + 184069350 TCCTCAATAATATTCACTCATCTTTTTCTTT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20685336 31 + 189454096 TCCTCAGTAATATTCACTCATCTTTTTCTTT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16279160 31 + 178775436 TCCTCAATAATATTcactcatctttttcttt i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19755314 31 - 48547382 TCCTCAATAATATTCACTCATCTTTTTCCTT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21113486 31 - 190850796 TCCTCAGTAATATTCACTCATTTATTTCTTT i calJac3.chr3 I 2 C 0 s mm10.chr5 49108058 31 + 151834684 CCATCTAAATTATTCACTGATCTTTCTTTCC i mm10.chr5 C 0 C 0 e canFam3.chr3 3704181 70 - 91889043 I a score=9472.000000 s hg38.chr4_KI270790v1_alt 2143 12 + 220246 tctcgtttcc------------tt s panTro4.chr4 21388540 12 + 193495092 tctcttttcc------------tt i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21565329 12 + 198332218 tctcttttcc------------tt i ponAbe2.chr4 C 0 I 12 s nomLeu3.chr20 20178382 12 - 85365473 TCTCTTTTCC------------TT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16643097 12 + 184069350 TCcctttccc------------cc i rheMac3.chr5 C 0 I 8 s macFas5.chr5 20685367 12 + 189454096 TCCCTTTCCC------------cc i macFas5.chr5 C 0 I 8 s papAnu2.chr5 16279191 24 + 178775436 tcccttttccccttcctcccttcc i papAnu2.chr5 C 0 I 8 s chlSab2.chr27 19755345 12 - 48547382 TCCCTTTTCC------------cc i chlSab2.chr27 C 0 I 11501 s calJac3.chr3 21113517 2 - 190850796 CC---------------------- i calJac3.chr3 C 0 C 0 e mm10.chr5 49108089 0 + 151834684 C e canFam3.chr3 3704181 70 - 91889043 I a score=618392.000000 s hg38.chr4_KI270790v1_alt 2155 224 + 220246 ttccttctttgcttcc-----ttccttccttccgtccttcctt--tTACtttccttctttct---------ctttct-----tttctttcagacagaatcagtctctatcacccaggttggagtgcaatagtacaatcatagcccactgacacctcaaactcttgagctcaagtgatcctcctgcctcagcctcatgagcatatgggactacaggtgtgtgccaccacacctgggtaattttttt- s panTro4.chr4 21388552 224 + 193495092 ttccttctttgcttca-----ttccttccttccgtccttcctt--TTACtttccttctttct---------ctttct-----tttctttcagacaggatcagtctctatcacccaggttggagtgcaatagtacaatcatagcccactgacacctcaaactcttgagctcaagtgatcctcctgcctcagcctcatgagcatataggactacaggtgtgtgccaccacacctgggtaattttttt- i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21565353 232 + 198332218 ttccttccttccttcc-----ttctttccttccttccttcctt--tttctttccttctttctttctctttcttttct-----tttcttttagacaggatcagtctctatcacccaggttggagtacaatagtataatcatagcccagtgtcacctcaaactcttgagcttcagtgatcctcctgcctcagcctcatgagcatacggtactacaggtgtgtgccaccacacctgggtaa-tttttt- i ponAbe2.chr4 I 12 C 0 s nomLeu3.chr20 20178394 233 - 85365473 ttccttccttccttcctttctttccttccttccttccttcctt--TTACTGTCCttctttctttct-----ctttct-----tttcttttagacaggatcagtctctatcacccaggttggagtgcaatagtacaatcatagcccactgtcacctcaaactcttgagcgcaagtgaccctcctgcctcagcctcatgagcatatgggactacaggtgtgtgccactacacctgggtaattttttt- i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16643117 233 + 184069350 ttccttccttccttcc-----ttccttccttccttccttccttccctccctccCttctttcttcct-----ctttcttttcgtttcttttagacaggatcagtctctatcacccaggttggagtgcaatagtacgatcatagcccattgtcacctcaaactcttgagctcaagtgatcctcctgcct-agcctcatgagcatatgggactacaggtgtgtgccaccatacctgggtaa-tttttt- i rheMac3.chr5 I 8 C 0 s macFas5.chr5 20685387 234 + 189454096 ttccttccttccttcc-----ttccttccttccttccttccttccttccCTCCCttctttcttcct-----ctttcttttcgtttcttttagacaggatcagtctctatcacccaggttggagtgcaatagtacgatcatagcccattgtcacctcaaactcttgagctcaagtgatcctcctgcctcagcctcatgagcatatgggactacaggtgtgtgccaccatacctgggtaa-tttttt- i macFas5.chr5 I 8 C 0 s papAnu2.chr5 16279223 234 + 178775436 ttccttccttccttcc-----ttccttccttccttccttccttccctccctcccttctttcttcct-----ctttcttttcgtttcttttaGACAGGATcagtctctatcacccaggttggagtgcaatagtacGATCATAGCCCATTGTcacctcaaactcttgagctcaagtgatcctcctgcctcagcctcatgagcatatgggactacaggtgtgtgccaccatacctgggtaa-tttttt- i papAnu2.chr5 I 8 C 0 s chlSab2.chr27 19766858 229 - 48547382 ttccttccttccttcc-----ttccttccttccttccttcctttcctccctcccttcattcttcct-----Ctttct-----tttcttttagacaggatcagtctctatcacccaggttggagtgcaatagtacgatcatagcccattgtcacctcaaactcttgagctcaagtgatcctcctgcctcagcctcatgagcatataggactacaggtgtgtgccaccatacctgggtaa-tttttt- i chlSab2.chr27 I 11501 C 0 s calJac3.chr3 21113519 205 - 190850796 -----------CTACC-----TCCCTTCCTTCCTTCCTTCttt---------ccttctctctctc------ttttct-----tttcattgagacagggtcagtctctataacccaggttgcagtgcagtagtatgatcatagcctactgtcacctcaaacttttgggctcaagtgatcctcctgcctcagcctcatgagcacctgggactacaggggtgtgctaccacacctag-----ttttttt i calJac3.chr3 C 0 I 304 e mm10.chr5 49108089 0 + 151834684 C e canFam3.chr3 3704181 70 - 91889043 I a score=379712.000000 s hg38.chr4_KI270790v1_alt 2379 129 + 220246 attaatatttt-----cagacaaggtcttgctaggttgtccaggctggtctcaaactcctggactcaagcgatcctcttacctcagcctcccaaagtgctaagattaca---ggtgtgagccactgtgcctggAC-TT s panTro4.chr4 21388776 129 + 193495092 attaatatttt-----gagacaaggtcttgctatgttgtccaggctggtcttaaactcctggactcaagtgatcctcttacctcagcctcccaaagtgctaagattaca---ggtgtgagccactgtgcctggAC-TT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21565585 137 + 198332218 attaatattttgagtagagacaaggtcttgctatgttgtccagactggtctcaaactcctggactcaagcgattctcttacctcagcctcccaaagtgctaagattacaaccactgtgagccactgtgcctggGC-TT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20178627 129 - 85365473 attaatatttt-----gagacaaggtcttgctatgttgtccaggctggtctcaaactcctggactcaagcgatcctcttacctcggcctcccaaagtgctaagattaca---ggtgtgagccactgtgcctggGC-TT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16643350 129 + 184069350 atgaatatttt-----gagacaaggtcttgcagtgttgtccaggctggtctcaaactcctggactcaagcaatcctcttacctcagcctcccaaagtgctaagattaca---ggtgtgagccactgggcctggGC-TT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20685621 129 + 189454096 atgaatatttt-----gagacaaggtcttgcagtgttgtccaggctggtctcaaactcctggactcaagcaatcctcttacctcagcctcccaaagtgctaagattaca---ggtgtgagccactgggcctggGC-TT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16279457 129 + 178775436 atgaatatttt-----gagacaaggtcttgcagtgttgtccaggctggtctcaaactcctggactcaagcaatcctcttacctcagcctcccaaagtgcgaagattaca---ggtgtgagccactgggcctgggc-tt i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19767087 130 - 48547382 atgaatatttt-----gagacaaggtcttgcaatgttgtccaggctggtctcaaactcctggactcaagcaatcctcttacctcagcctcccaaagtgctaagattaca---ggtgtgagccactgtgccTAGGCTTT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21114028 134 - 190850796 attaatattttgagtagagataaggtcttgctatgtcatccaggctggtctcaaactcctggactgaagagatcctctcacttcagcctcccacagtgctaagattaca---ggtatgagcctctgtgcctggGA-TC i calJac3.chr3 I 304 C 0 e mm10.chr5 49108089 0 + 151834684 C e canFam3.chr3 3704181 70 - 91889043 I a score=31916.000000 s hg38.chr4_KI270790v1_alt 2508 10 + 220246 TTTTGCTTTT- s panTro4.chr4 21388905 10 + 193495092 TTTTGCTTTT- i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21565722 10 + 198332218 TTTTGCTTTT- i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20178756 10 - 85365473 TTTTGATTTT- i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16643479 10 + 184069350 TTTTGCTTTT- i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20685750 10 + 189454096 TTTTGCTTTT- i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16279586 10 + 178775436 ttttgctttt- i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19767217 10 - 48547382 TTTTGCTTTT- i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21114162 10 - 190850796 TTTTGTTTTT- i calJac3.chr3 C 0 C 0 s canFam3.chr3 3704251 10 - 91889043 -TTTGTCTTTC i canFam3.chr3 I 70 C 0 e mm10.chr5 49108089 0 + 151834684 C a score=2482196.000000 s hg38.chr4_KI270790v1_alt 2518 752 + 220246 TGACACCTTTACATGGAGGCTTTGAAGTACTCTTTTAATG--ATATATTGGATAATGTA--TTTCTTCCTTAAAAC--ATTAATATGGATTT---AGAATATCCAAAATGTATGATATTTCTGCCATGTTTCTTTGCCA-----ACA-T--TTTTTCCATCCTGTGAAGGGGCTCAGGTTTGGTATGAGTCTGAGCCTCTCTCCTCCTCCTTTATTTT-CTCCACTCTTGAAAGAATGGAGAGACATAGACATATCTGGGTGGT-AGTGTGGGAAGAATAAGCTGGCATGCTCTTCTCTGCTCACTCCTATTTTCACCTGCCTCACTGTGGTAGCCTTTCTTTGCTCCAGCCCTTCTTATGGATGG-TTAACAGTGTCTATCATTCTTGGGGTTAGG----------GTGTGAGCCCATTTGGCTCTC--ACACTAAACAGATGTTTTGGCTTCCATGTTTTCCCTATTATTTCCCCATGTTTGTCCAGAATCAGATAAGAATGAGGTGCTATTTATTGTGTGTCCCCTAGACATTCCCAA------AAATGTTTATGTGACTGT-------AAGCTCTTGCATCTGATTTTTCCTGAAGTGTTGTCTCATTGAGCTTCTTTCTGACTT--ATGCAATAGCCACTATGAC--TTTTTT-----TTCTTATGcttctttcaattctgtgaatatatccagttc-tttttcatttttggcttttacacctgctaatgttttgcctttttactcttcacttacttaacacttattcgttctttaggtttcattttaaatataaattcttc s panTro4.chr4 21388915 753 + 193495092 TGACACCTTTACATGGAGGCTTTGAAGTACTCTTTTAATG--ATATATTGGATAATGTA--TTTCTTCCTTAAAAC--ATTAATATGGATTT---AGAATACCCAAAATGTATGATATTTCTGCCATGTTTCTTTGCCA-----ACA-T--TTTTTCCATCCTGTGAGGGGGCTCAGGTTTGGTATGAGTCTGAGCCTCTCTCCTCCTCCTTTATTTT-CTCCACTCTTGAAAGAATGGAGAGACATAGACATATCTGGGTGGT-AGTGTGGGAAGAATAAGCTGGCATGCTCTTCTCTGCTCACTCCTATTTTCACCTGCCTCACTGTGGTAGCCTTTCTTTGCTCCAGCCCTTCTTATGGATGGGTTAACAGTGTCTATCATTCTTGGGGTTAGG----------GTGTGAGCCCATTTGGCTCTC--ACACTAAATAGATGTTTTGGCTTCCATGTTTTCCCTATAATTTCCCCATGTTTGTCCAGAATCCGATAAGAATGAGGTGCTATTTATTGTGTGTCCCCTAGACATTCCCAA------AAATGTTTATGTGACTGT-------AAGCTCTTGCATCTGATTTTTCCTGAAGTGTTGTCTCATTGAGCTTCTTTCTGACTT--ATGCAATAGCCACGATGAC--TTTTTT-----TTCTTATActtctttcaattctgtgaatatatccacttc-tttttcatttttggcttttacacctgctaatgttttgcctttttactcttcacttacttaacactttttcgttctttaggtttcattttaaatataaattcttc i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21565732 748 + 198332218 TGACACATTCACATGGAGGCTTTGAAGTACTCTTTTAATGATATATATTGGATAATGTA--TTTCTTCCTTAAAAC--GTTAACATGGATTT---ATAAGATCCAAACTGTAAAATATTTCTGCCATGTTTCTTTGCCA-----ACATT--TTTTTCCATACTGTGAGGGGACTCAGGTTTGGTTTGAGTCTGAGC--TTCTTCTCCTCCTTTATTTT-CTCCACTCTTGAAAGAATGGAGAAACATAGACATATCTGGGCGGT-AGTGTGGGAAGAATAAGCTGGTATGCTCTTCTCTGCTCACTCCTATTTTCACCTGCCTCACTGTGGTAGCCTTTCTTTGCTCCAGTCCTTCTTATGGATGGGTTAACAGCGTCTATCATTCTTGGGGTTGGG----------GTGTAAGCCCATTTGCCTCTC--ATACTAAATAGATGTTTTGGCTTCCATGTTTTTCCTATCATTTCCCCACGTTTGTCCAGAATCAGATAAGAATTAGGTGCTATTTATTGTGTGTCCCCTAGACATTCCCAA------AAATGTTTATATGACTGT-------AAGCTCT------TGATTTTTCCTGAAGTGTTGTCTCATTGAGATTCTTTCTGACTT--ATGCAATAGCCACTATGAC--TTTTTT-----TTCTTATGcttctttcaattctgtgactatatcaagctc-tttttcatttttggcttttacacctgctaatgttttgcctttttactcttcacttacttaacacttattcattctttgggtttcattttaaatataaattcttc i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20178766 742 - 85365473 TGACACCTTCACATGGAGGCTTTGAAGTACTCTTTTAATGATATATATTGGATAATGTA--TTTCTTCCTTAAAAC--ATTAACATGGATTT---AGAATATCCAAACTGTATAATATTTCTGCCATGCTTCTTTGCCA-----ACA-T--TTTTTCCATCCTGTGAGGGGGTTCAGGTTTGGTATGAGTCTGAGCCTCTCTCCTCCTCCTTTATTTT-CTCCACTTTTGAAAGAATGGAGAGACATAGACATATGTGGGTGGT-AGTGTGGGAAGAATAAG-------------CTCTGCTCACTCCTATTTTCACCTGCCTCACTGTGGTAGCCTTTCTTTGCTCCAGCCCTTCTTATGGATGGGTTAACAGGGTCTATCATTCTTGGGGTTAGG----------GTGTGAGCCCATTTGGCTGTC--ACACTAAACAGATGTTTTGGCTTCCATGTTTTCCCTATCATTTCCCCATGTTTGTCCAGAATCAGATAAGAATGAGGTGCTATTTATTGTGTGTCCCCTAGACATTCCCAA------AAATGTTTATGTGACTGT-------AAGCTCTTGCATCTGATTTTTCCTGAAGTGTTGTCTCATTGAGCTTCTTTCTGACTT--ATGCAGTAGCCACTATGAC--TTTTTT-----TTCTTATGcttctttcaattctgtgaatatatcaagttc-tttttcatttttggcttttatacctgctaatgttttgcctttttactcttcacttacttaacacttatttgttctttaggtttcattttaaatatcaattcttc i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16643489 749 + 184069350 TAACACCTTTGCATGGAGGCTTTGAAGTACTCTTTTAATGATATATATTGGATAATGTA---TTCTTCCTTAAAAC--ATTAACATTAATTT---AGAATATCCAAACTGTATAATATTTCTGCCATGTTTCTTTGCCA-----ACA-T--TTTTTCCATCCTGTGAGGGGGCTCAGGTTTGCTATAAGTCTGAGC--TTCTCCTGCTCCTTTATTTT-CTCCACTCTTGAGAGAATGGAG------AGACGTATCTGGGTGGT-AGTGTGGGAAGAATAAGCTGGCATGCTCTTCTCTGCTCACTCCTCTTTTCACCTGCCTCACTGTGGTAGCCTTTCTTTGCTCCAGCCCTTCTTATGGATGGGCTAACAGTGTCTATCATTCTTGGGGTTAGG----------GTGTGAGCCCATTTGGCTCTC--ACACTAAGCAGATGTTTTGGCTTCCATGTTTTCCCTAACATTTCCCCATGTTTGTCCAGAATCGGATAACAATGAGGTGCTATTTATTGTGTGTCCCCTAGACATTCTCCA------AAATGTTTATGTGActgt-------accctcttgcatctgatttttcctgaagtgttgtctcactgaccttctttctgactt--atgcaatagccactatgactttttttt-----ttcttatgcatctttcaattctgtgaatatatcaagttcttttttcatttttggcttttacacctgctaatgttttgcctttttactcttcacttacttaacacttactgattctttaggtttcattttaaatatcaattcttc i rheMac3.chr5 C 0 I 326 s macFas5.chr5 20685760 748 + 189454096 TAACACCTTTGCATGGAGGCTTTGAAGTACTCTTTTAATGATATATATTGGATAATGTA---TTCTTCCTTAAAAC--ATTAACATTAATTT---AGAATATCCAAACTGTATAATATTTCTGCCATGTTTCTTTGCCA-----ACA-T--TTTTTCCATCCTGTGAGGGGGCTCAGGTTTGCTATAAGTCTGAGC--TTCTCCTGCTCCTTTATTTT-CTCCACTCTTGAGAGAATGGAG------AGACGTATCTGGGTGGT-AGTGTGGGAAGAATAAGCTGGCATGCTCTTCTCTGCTCACTCCTCTTTTCACCTGCCTCACTGTGGTAGCCTTTCTTTGTTCCAGCCCTTCTTATGGATGGGCTAACAGTGTCTATCATTCTTGGGGTTAGG----------GTGTGAGCCCATTTGGCTCTC--ACACTAAGCAGATGTTTTGGCTTCCATGTTTTCCCTAACATTTCCCCATGTTTGTCCAGAATCGGATAACAATGAGGTGCTATTTATTGTGTGTCCCCTAGACATTCTCCA------AAATGTTTATGTGActgt-------accctcttgcatctgatttttcctgaagtgttgtctcactgaccttctttctgactt--atgcaatagccactatgac-ttttttt-----ttcttatgcatctttcaattctgtgaatatatcaagttcttttttcatttttggcttttacacctgctaatgttttgcctttttactcttcacttacttaacacttattgattctttaggtttcattttaaatatcaattcttc i macFas5.chr5 C 0 I 316 s papAnu2.chr5 16279596 748 + 178775436 taacaccTTTACATGGAGGCTTTGAAGTACTCTTTTAATGATATATATTGGATAATGTA---TTCTTCCTTAAAAC--ATTAACATTAATTT---AGAATATCCAAACTGTATAATATTTCTGCCATGTTTCTTTGCCA-----ACA-T--TTTTTCCATCCTGTGAGGGGGCTCAGGTTTGCTATAAGTCTGAGC--TTCTCCTGCTCCTTTATTTT-CTCCACTCTTGAGAGAATGGAG------AGACGTATCTGGGTGGT-AGTGTGGGAAGAATAAGCTGGCATGCTCTTCTCTGCCCACTCCTCTTTTCACCTGCCTCACTGTGGTAGCCTTTCTTTGCTCCAGCCCTTCTTATGGATGGGCTAACAGTGTCTATCATTCTTGGGGTTAGG----------GTGTGAGCCCATTTGGCTCTC--ACACTTAGCAGATGTTTTGGCTTCCATGTTTTCCCTAACATTTCCCCATGTTTGTCCAGAATCGGATAACAATGAGGTGCTATTTATTGTGTGTCCCCTAGACATTCTCCA------AAATGTTTATGTGACTGT-------ACCCTCTTGCATTTGATTTTTCCTGAAGTGTtgtctcactgagcttctttttGACTT--ATGCAATAGCcactatgac-ttttttt-----tttttatgcatcTTTCAATTCCGTGAATATATCaagttcttttttcatttttggcttttacacctgctaatgttttgcctttttACTCTTCACTTACTTAACACTTATTGATTCTGTAggtttcattttaaatatcaattcTTC i papAnu2.chr5 C 0 I 331 s chlSab2.chr27 19767227 748 - 48547382 TAACATCTTTACATGGAGGCTTTGAAGTACTCTTTTAATGATATATATTGGATAATGTA---TTCTTCCTTAAAAC--ATTAACATTAATTT---AGAATATCCAAACTGTATAATATTTCTGCCATGTTTCCTTGCCA-----ACA-T--TTTTTCCATCCTGTGAGGGGGCTCAGGTTTGCTGTAAGTCTGAGC--CTCTCCTGCTCCTTTATTTT-CTCCACTCTTGAGAGAATGGAG------AGACATATCTGGGTGGT-AGTGTGGGAAGAATAAGCTGGCATGCTCTTCTCTGCTCACTCCTCTTTTCACCTGCCTCACTGTGGTAGCCTTTCTTTGCTCCAGCCCTTCTTATGGATGGGCTAACAGTGTCTATCATTCTTGGGGTTAGG----------GTGTGAGCCCATTTGGCTCTC--ACACTAAGCAGATGTTTTGGCCTCCATGTTTTCCCTAACATTTCCTCATGTTTGTCCAGAATCAGATAACAATGAGGTGCTATTTATTGTGTGTCCCCTAGACATTCCCAA------AAATGTTTATGTGACTGT-------AAGCTTTTGCATCTGATTTTTCCTGAAGTGTTGTCTCACTGAGCTGCTTTCTGACTT--ATGCAATAGCCACTATGAC-TATTTTT-----TTCTTATGCAcctttcaattctgtgaatatatcaagttcttttttcatttttggcttttacacctgctaatgttttgcctttttactcttcacttacttaacacttcttgattctttaggtttcattttaaatatcaattcttc i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21114172 761 - 190850796 TGACAACTTTATATGGAGGCTTTGAGGTACTCTTTTAATTATACATACCAGATAATGTG--TTTCTTCCTTAAAAC--CTTAACATACATTT---GGAACATCCAAATTGTATAATATTTCTGTCATATTTCTTTTTCA-----ACA-T--TGTTGTCTTCCTGTGAAAGGACTGAGGTTTGGTGTGAGTGTGAGC--CTCTCCTGCTCCTTTATTTT-CTCCACCCTTGAGAGGATGGAGAGACATAGATGTATCTGGGAGGT-AGTATGGGAAGAATAAGCTGGCATGCTCTTCTCTGCTCACTCCTCTTTTCACCTGCCTCACTGAGGTAGACTTTATTTTCTCCAGCTCTTCTTATGGATGGGTTAATAGTGTCCATCATTCTTGGGATTGGACATTCTCGGTGTGTGAGCCCATTTGGCTCTC--ACACTAAATAGATGTTTTGGCATCCATGTTTTCCATGTCATTTCCCCAACTTTGTCCAGAA-CAGATAAGAATGAGGTGCAAGTTATTGTGGGTCCCCTAGCAATTCCCAG------AACTGTTCGTGTGAc----------aagctcttgcatctgatttttcctgaagcattgtctcattgagcttctttctgattt--atgcaatagccactatgaccttttttt-----tccttatgcttgttccaattctgtgactatatcaagttc-tttttcatttttggcttttacatctgctaatggtttgccattttactcttcacatacttagcacatattcattgtttgagtttcattttaaatatcaattcttc i calJac3.chr3 C 0 C 0 s mm10.chr5 49108089 671 + 151834684 TGATACCATTATATTGAGTAAACGGAG-ATCCCTTTAACAATATATAATGGAAGATGTATTTTTTTTCCTTAACACTGGTTA--------TA---ACACCATCAAGAATTGACAATAT---TGCCATGCTCTTTTGACAGTGGGACG-T--CTTCT---TCCTG-GAAATGGATCAGGTCTCATGTAGA--TGAGA-----TTATGCACTTT--TTAC-TACCATCCCAGAGACAGTAGAGACATGCCAGCATAACTCAGTGGT-GGTGTGGGAAGAACATGTTGCCTTAAATGTCTGTATTAGTTTTTATTTTGTTTTGTTTTAGTGCTTTAGCTT-------CGAAAGAGCTGCCTTAGAAAGGGGTGGTAAT---CGTAGCTCTTGTATTAGGT----------GTG---------TTGACTGTCAAATAATGAGCAAATGTTTATACTT--GTGGTTCCCCTA---------------CATCTACAATCAGGTAGGCTTGAGGTGCTTTTTGTTGGATGAGCCTCAGACACCCCGAA------ACAT-------TGACACA-------AACATCTTACATCTGATTTTTCTGTAAAC---TTCCTTCTGTGCT-CTTTATGATTTACATGTAGAATAAATTA-GAC-----------------------TCTCACCATTCTCCAAATACATTGAT----TTAATTATGTTT-GTATGTATTCTTGCTATTTCTTTTCCTTCTTGCTCTTTATATATTCTACATTTATTAACTAT----ATTTTATTTTAAGTATTACTTCATC i mm10.chr5 C 0 C 0 s canFam3.chr3 3704261 760 - 91889043 GGAAACTTTTGCATCAAGTCCCTGAAGTGCCCTTTTAATGACCTATATTGGATCATGTA--CACTTTCCTTGAAAG--CTTACAGTGGATTTACAACAACATCCCAATTGTATAATGCCCCTGTCATGTTTCTTTGCCG-----TCA-TGATATTTCCTTCCT--GGAAGGACTCGGGATTGATGGGAGCCTGGTT--CTCTCTTGCTCCTGAATTTTGTTCCACCCTCGGGAAGGTGGTG------AGATCTATGTGACTGGCGAGTGTGAGAAGAACAAGGTGGTGTGCTCTGCTGTGCTTGGTCCTCTTCTCACCTGTCCCTC------AGGCCCGCCGTGTTCTGGTACTTCTTAGGAACGGGCTGGTGAGGTCTATTACTTTTATGTTTCAG----------GCATGGGCCCATTTGGCTCTC--ACACTAAGCAGATGTTTTGGCTTCCATGTTCGTCCTAGCATTTTCTCAC-TTCATCCAGATTCAGAAAGGGATGAGGTGCTATTTACTGAGTAGCCTCTTGGAGACCCCAATCGCCCAAATGTTCACATGATTATAAAATACAACATCTTCCACTTGACTATTTCTTAAAATTTCTCTTAT---GCTATGTTCTGATAT--ATGTTACAGCCACTATGAC--TTTTTTCCTCCTTCTCTTCCATCTCTTAATTCTGTGAATGATTCAAATTA-TTTTCCATTTCTggctcttataaccgctattcctctgtcttcccattctttatagacttaacattttttcattctttaggttttattttaaatattaactcttc i canFam3.chr3 C 0 C 0 a score=1140631.000000 s hg38.chr4_KI270790v1_alt 3270 341 + 220246 agggaaaccttctaagtcagtctcgtgtt-attcccttccataccatctaatctttttcttcctatcacttattttttgaaatattttctgtctatctccattatcagattgtaagggccatgaaagcaaagagtgctgtctgtttgcttgactagtga--------------ttttttttt-tattttttgcatcatgcgtagtgccttgcacataacaggaagtcaataaatatttgttgaatccatgaatGACTTCTGTCTTAATTTACTTGAACAACCACAAATTC--AACATATACTAT-GTGCAAAGAAGTCACTTTGCTATGTTAGTTATGTGC-TCCTGCCCTCTGGAAGACT s panTro4.chr4 21389668 340 + 193495092 agggaaaccttctaagtcagtctcgtgtt-attcccttccataccatctaatctttttcttcctatcacttattttttgaaatattttctgtctatctccattatcagattgtaagggccatgaaagcaaagagtgctgtctgtttccttgactagtga--------------ttttttttt--attttttgcatcatgcatagtgccttgcacataacaggaagtcaataaatatttgttgaatccacgaatGACTTCTGTCTTAATTTACTTGAACAACCACAAATTC--AACATATACTAT-GTGCAAAGAAGTCACTTTGCTATGTTAGTTATGTGC-TCCTGCCCTCTGGAAGACT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21566480 342 + 198332218 agggaaaccttctaagtcagtctcgtgtt-attccctttcattccatctaatcgttttcttcctatcacttatttttcgaaatattttctgtctatctccattatcagattgtaagggccattaaagcaaagagtgctgtctgtttgcttgactagtga--------------tttttttttaaattttttgcatcatgcatagtgccttgcacataacaggaagtcaataaatatttgttgaatccatgaatGACTTCTGTCTTAATTTACTTGAACAACCACAAATTC--AACATATACTAT-GTGCAAAGAAGTCACTTTGCTATGTTAGTTATGTGC-TCCTGCCCTCTGGAAGACT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20179508 336 - 85365473 agggaaaccttctaagtcagtctcgtatt-attcccttccataccatctaatctttttcttcctatcacttgtttgttgaaatattttctgtctatctccattatcagactgtaagggccatgaaagcaaagagtgctgtctgttggcttgactagtga--------------tatattttt----tttttgcatcatgcataatgccttgcacataacaggaagtcaataaatatttgttgaatccatgaatGGCTTTTGTCTTA--TTACTTGAACAACCACAAATTC--AACGTATACTAT-GTGCAAAGAAATCACTTTGCTATGTTAGTTATGTGC-TCCTGCCCTCTGGAAGACT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16644564 346 + 184069350 agggaaaccttctaagtcagtctcctgtt-attcccttccataccatctaatctttttcttcctatcacttatttcttgaaatattttctgtctatctccattatcacattgtaagggccaggaaagcaaagagtgctctctgttggcttgaccagtga----------ttttttttttttt-ttttttttgcatcatgcatagtgccttgcacataacaggaagtcaataaatatttgttgaattcatgaatGACTTCTTTCTTGATTTACTTGAACAACCACAAATTC--AACATATACTATCGTGCAAATAAGTCATTTTGGTATGTTAGTTATGTGC-TCCTGCCCTCTGGAAAACT i rheMac3.chr5 I 326 C 0 s macFas5.chr5 20686824 345 + 189454096 agggaaaccttctaagtcagtctcctgtt-attcccttccataccatctaatctttttcttcctatcacttatttcttgaaatattttctgtctatctccattatcacattgtaagggccatgaaagcaaagagtgctctctgttggcttgaccagtga-----------tttttttttttt-ttttttttgcatcatgcatagtgccttgcacataacaggaagtcaataaatatttgttgaatccatgaatGACTTCTTTCTTAATTTACTTGAACAACCACAAATTC--AACATATACTATCGTGCAAATAAGTCATTTTGGTATGTTAGTTATGTGC-TCCTGCCCTCTGGAAAACT i macFas5.chr5 I 316 C 0 s papAnu2.chr5 16280675 356 + 178775436 agggaAACCTTCTAAGTCAGTCTCCTGTT-ATTCCCTTCCATACCATCTAATCTTTTTCTTCCTATCActtatttcttgaaatattttctgtctATCTCCATTATCACATTGTAAGGGCCATGAAAGCAAAGAGTGCTCTCTGTTGGCTtgaccagtgattttttttttttttttttttttt-ttttttttgcatcatgcatagtgccttgcacataacaggaagtcaataaatatttgttgaatccaTGAATGACTTCTTTCTTAATTTACTTGAACAACCACAAATTC--AACATATACTATCGTGCAAATAAGTCATTTTGCTATGTTAGTTATGTGC-TCCTGCCCTCTGGAAAACT i papAnu2.chr5 I 331 C 0 s chlSab2.chr27 19767975 345 - 48547382 agggaagaattcttagtcagtctcctgtt-attcccttccataccatctaatctttttcttcctatcacttattttttgaaatattt----tctatctccattatcacattgtaagggccatgaaagcaaagagtgctgtctgttggcttgactagaga-------tttttttttttttttt-ttttttttgcatcatgcatagtgccttgcacataacaggaagtcaataaatatttgttgaatccatgaatGACTTCTTTCTTAATTTACTTGAACAACCACAAATTC--CACATATACTATTGTGCAAATAAGTCACTTTGCTATGTTAGTTATGTGC-TCCTGCCCTCTGGAAAACT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21114933 329 - 190850796 agggaaaacttctaagtcagtcccatgtt-gttctcttccataccatcttatctttttcttcctatcatttattttttgaaacattttctgtctctctccattatcagtttgtaagagccataaaaagaagcagtgctgtctgttggctcgaccagtga--------------tttttttta-----------atcaggtacagtgccttgcacataacaggaagtcaataaatatttgttgaatccatgaatGACT--TATCTTAATCTACCTGATCAACCACAAATTC--AACATATACTAT-GTGCAAAGAAGTTACTTTGCTATTTTAGTTATATGC-TCCTGCCTTCTAGAAGACT i calJac3.chr3 C 0 C 0 s mm10.chr5 49108760 322 + 151834684 ACAGAAACTTTGTGAAT------CCTGTTAAATTTCTCCCATAGACTCTAATATTTGTCCTC---TCACTT-CCTTTCAAACTGTTTTTCAATCATGTTcctcatgagactctaagtgcagtgaaaacaattgaggttgttggctgtttttatcattgg----------------cttttta---------gcactatgcataacgtcacacatatgacaggatgtcaataagtatttgttgaatTCACCAGTGATTTTTGTGTTCAGTGAGTCAAATCATAATATATTC--AACA-GGACTAT-GTACAGATAAGACAGTTTGCTAAGTGAGTAATGAATATTTTCCCCTCTGAAAGGCt i mm10.chr5 C 0 I 295 s canFam3.chr3 3705021 315 - 91889043 agataaactttctatgtaagacccctatt-cttccctt-cacagcttctcatcttt---tttctatcacttattttttgaactatttcctgcctgcctttatcaccagattgtgagctccatgaaagttgaga-caccgttggttttcttgaccaaacc--------------agtgccttc------------------accgtgtctgacacataat--gaactcaatacatacttgttgCCTCTGTGAATGACTTCTGTTTTAACTGAACTAAACAGC----AGTTCGTATTTTATCATAT-GCACAAAGAAGGTACTTTGCTAAGTTATTTATGTGC-CTTTGCCCTTTGGAAGACT i canFam3.chr3 C 0 C 0 a score=764502.000000 s hg38.chr4_KI270790v1_alt 3611 226 + 220246 GTTTTCCAATAGAGCCAGTAGC---AGCCCAGCTTGAAGCTATCAGAAAGTC-ATCTTCTCCTTCTCCTAACTTGGGGAATTTCCATGCTTTATTTGACAAATAATAACCAGCAAAGTGCACATCAATAAAGAGCCACTTA------TTAAAAGAATGAGCAATTTAAC--------CAAAAATATCTCAAAAAGAGACTTCTATGTTAGATTTTATAACCACATGTAAATC-ACAACAGTATAT s panTro4.chr4 21390008 226 + 193495092 GTTTTCCAATAGAGCCAGTAGC---AGCCCAGCTTGAAGCTACCAGAAAGTC-ATCTTCTCCTTCTCCTAACTTGGGGAATTTCCATGCTTTATTTGACAAATAATAACCAGCAAAGTGCACATCAATAAAGAACCACTTA------TTAAAAGAATGAGCAATTTAAC--------CAAAAATATCTCAAAAAGAGACTTCTATGTTAGATTTTATAACCACATGTAAATC-ACAACAGTATAT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21566822 226 + 198332218 GTTTTCCAATAGAGCCAGTACC---AGCCCAGCTTGAAGCTATCAGAAAGTC-ATCTTCTCCTTCTCCTAACTTGGGGAATTTCCATGCTTTACTTGACAAATAATAACCAGCAAAGTGCACATCAATAAAGAACCACTTG------TTAAAAGAATGAGCAATTTAAC--------CAAAAATATCTCAAAAAGAGACTTCTATGTTAGATTTTATAACCACATGTAAATC-ACAACAGTATAT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20179844 230 - 85365473 GTTTTCCAATAGAGCCAGTAGC---AGCCCAGCTTGAAGCTATCAGAAAGTC-ATCTTCTCCATCTCCTAACTTGGGGAATTTCCATGCTTTATTTGACAAATAATAACCAGCAAAGTGCACATCAATAAAGAACCACTTA------TTA----AATGAGCAATTTAATTTTTTTGACAAAAATATGTCAAAAAGAGACTTCTATGTTAGATTTTATAACCACATGTAAATC-ACAACAGTATAT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16644910 227 + 184069350 GTTTTCCAATAGAGCCAGTAGC---AGCCCAGCTTGAAGCTATCAGAAAGTC-GTCTTCTCCTTCTCCTAACTTGGGGAATTTCCATGCTTTATTTGACAAATAATAACCAGCAAATTGCACATCAATAAAGAACCACTTA------TTAAAAGAATGAGCAATTTAACC-------CAAAAATATCTCAAAAAGAGACTTCTATGCTAGATTTTATAACCACATGTAAATC-ACAGCAGTATAT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20687169 227 + 189454096 GTTTTCCAATAGAGCCAGTAGC---AGCCCAGCTTGAAGCTATCAGAAAGTC-GTCTTCTCCTTCTCCTAACTTGGGGAATTTCCATGCTTTATTTGACAAATAATAACCAGCAAATTGCACATCAATAAAGAACCACTTA------TTAAAAGAATGAGCAATTTAACC-------CAAAAATATCTCAAAAAGAGACTTCTATGCTAGATTTTATAACCACATGTAAATC-ACAGCAGTATAT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16281031 227 + 178775436 GTTTTCCAATAGAGCCAGTAGC---AGCCCAGCTTGAAGCTATCAGAAAGTC-GTCTTCTCCTTCTCCTAACTTGGGGAATTTCCATGCtttatttgacaaataataaCCAGCAAATTGCACATCAATAAAGAACCACTTA------TTAAAAGAATGAGCAATTTAACC-------CAAAAATATCTCAAAAAGAGACTTCTATGCTAGATTTTATAACCACATGTAAATC-ACAGCAGTATAT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19768320 227 - 48547382 GTTTTCCAATACAGCCAGTAGC---AGCCCAACTTGAAGCTATCAGAAAGTC-ATCTTCTCCTTCTCCTAACTTGGGGAATGTCCATGCTTTATTTGACAAATAATAACCAGCAAAGTGCACATCAATAAAGAACCACTTA------TTAAAAGAATGAGCAATTTAACC-------CAAAAATATCTCAAAAAGAGACTTCTATGCTAGATTTTATAACCACATGTAAATC-ACAGCAGTATAT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21115262 226 - 190850796 TTTTTTCAATATAGCGAGTAGC---AGCCCAACTTGAAGCTATCATAAAGTC-ATATTTTCCTTTTCCTAGCTTGAGCAATCTCCATGCTTAATTTGGCGAATAATAACCAGCAAAGTGCCTATCAATAAACAACCACTTA------TGAAAAGAATGAGCAATTTAACT-------CAAAAATATCTC-AAAAGAGACTTCTATGCTAGATTCTATAACCACATGTAAGTC-ACAACAGTATGT i calJac3.chr3 C 0 C 0 s canFam3.chr3 3705336 232 - 91889043 GTTTTCCTATATACTCAATAGCAAGAGTCCAGCTTGAAACCATCAGAGAGCCTATCCTTTCCTTCCATTAGCTTTATAAATTCCCATGCACCCTCTGACAA--AAAAACTAGCAAAGACACTATCAAGAAATAACTATTTATTTTTTTTAAAAG---GAGCAATACAAC--------CCAAAATATCTCAAAAGGAGATTTCTATGCCAAATTTTATAGCTATGTGTAAATCTTCCATAACATAT i canFam3.chr3 C 0 C 0 e mm10.chr5 49109082 295 + 151834684 I a score=841046.000000 s hg38.chr4_KI270790v1_alt 3837 251 + 220246 -GGAAAAACACTTAGA----------TCATTATATTTCATTTATTTTGCATAGTTTATCTTTCCAACAATATGGAAAACTTCTAGGAGGCAATAGTCCTAATT-TCATCTCTGTATTTTTTAAA-TGCTTAGTATTAGTTGGACAATTTGTAGGTATTCTGTAAACACATGTTGACTTTACTGTTCAG------------------------------TACTGAA-------------AAGTAAAATAAGGATGTTCTCATTACTTATGAACTCAAATGTGAA-GAGGAGTAGAGAGGCTTACAT-TTG s panTro4.chr4 21390234 251 + 193495092 -GGAAAAACATTTAGA----------TCATTATATTTCATTTATTTTGCATAGTTTGTCTTTCCAACAATGTAGAAAACTTCTAGGAGGCAATAGTTCTAATT-TCATCTCTGTATTTTTTAAA-TGCTTAGTATTAGTTGGACAATTTGTAGGTATTCTGTAAACACATGTTGACTTTACTGTTGAG------------------------------TACTGAA-------------AAGTAAAATAAGGATGTTCTCATTACTTATGAACTCAAATGTGAA-GAGGAGTAGAGAGGCTTACAT-TTT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21567048 251 + 198332218 -GGAAAAATATTTAGA----------TCATGATATTTCATTTATTTTGCATAGTTTGTCTTTCCAACAATATGGAAAACTTCTAGGAGGCAATAGTCCTAATT-TCATCTCTGTATTCTTTAAA-TGCTTAGTATTAGTTGGACAATTTGTAGGTATTCTGTAAACACATGTTGACTTTACTGTTGAG------------------------------TACTGAA-------------AAGTAAAATAAGGATGTTCTCATTACTTATGAACTCAAATGTGAA-GACGAATAGAGAGGCTTACAT-TTT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20180074 251 - 85365473 -GGAAAAACATTTAGA----------TCATTATATTTCATTTATTTTGCATAGTTTGTCTTCCCAACAATATGGAAAACTTCTAGGAGGCAATAGTCCTAATT-TCATCTCTGTATCCTTTAAA-TGCTTAGTATTAGTTGGACAATTTGTAGGCATTCTGTAAACACGTGTTGACTTTACTGTTGAG------------------------------TACTGAA-------------AAGTAAAATAAGGATGTTCTCATTACTTATGAACTCAAATGTGAA-GAGGAATAGAGAGGCTTACAT-TTT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16645137 251 + 184069350 -GGGAAAATACTTAGA----------TCATTATATTTCATTTATTCTGCATAGTTTGTCTTTCCAACAATATGGAAAAATTCTAGGAGGCAATAGTCCTAATT-TCATCTCTGTATTCTTTAAT-TGCTTAGTATTAGTTGGGCAATTTGTAGGTATTCCATAAACACACGTTGACTTTACTGTTGAG------------------------------TACTGAA-------------AAGTAAAATAAGGATGTTCTCATTACTTATGAACTCAAATGTGAA-GAGGAGTACAGAGCCTCATAT-TTT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20687396 251 + 189454096 -GGGAAAATACTTAGA----------TCATTATATTTCATTTATTCTGCATAGTTTGTCTTTCCAACAATATGGAAAAATTCTAGGAGGCAATAGTCCTAATT-TCATCTCTGTATTCTTTAAT-TGCTTAGTATTAGTTGGACAATTTGTAGGTATTCCATAAACACACGTTGACTTTACTGTTGAG------------------------------TACTGAA-------------AAGTAAAATAAGGATGTTCTCATTACTTATGAACTCAAATGTGAA-GAGGAGTACAGAGCCTCATAT-TTT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16281258 251 + 178775436 -GGGAAAATACTTAGa----------tcattatatttcatttattctgcatAGTTTGTCTTTCCAACAATATGGAAAAATTCTAGGAGGCAATAGTCCTAATT-TCATCTCTGTATTCTTTAAA-TGCTTAGTATTAGTTGGACAATTTGTAGGTATTCCATAAACACACGTTGACTTTACTGTTGGG------------------------------TACCGAA-------------AAGTAAAATAAGGATGTTCTCATTACTTATGAACTCAAATGTGAA-GAGGAGTACAGAGCCTCATAT-TTT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19768547 251 - 48547382 -GGGAAAATACTTAGA----------TCATTATATTTCATTTATTCTGCATAGTTTGTCTTTCCAACAATATGGACAAATTCTAGGAGGCAATAGTCCTAATT-TCATCTCTGTATTCTTTAAA-TGCTTAGTATTAGTTGGACAATTTGTAGGTATTCCATAAACACACGTTGACTTTACTGTTGAG------------------------------TACTGAA-------------AAGTAAAATAAGGATGTTCTCATTACTTATGAACTCAAATGTGAA-GAGGAGTACAGAGGCTTATAT-TTT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21115488 237 - 190850796 -GAAAAAACACTTGTA----------TCATTATATTTAATTTGTTTCACATAATTTGTC------------TGGAAAAATTCTGGGAGGCACTAGTCCTAATT-TCATCTCTGTATTCTTTAAA-TGCTTAGTAT--GTTGGACACTTTGTAGCTTTTTCTTAAAAACATGCTGAATTTACTGTTGGG------------------------------TACTGAG-------------AAATGAAGTAAGGATGTTCTCATTACTTATGAACTCAGATGTGAA-GAGGCACAGAGAGGGTTATAT-TTT i calJac3.chr3 C 0 C 0 s mm10.chr5 49109377 250 + 151834684 -GAATAAACAATTGAACTTCAACAAGTCATCATGTTTAATTTGTTTTAC----CATGATTTTCTAATATCATGGGAATATTCTGAGACGCAGAAGTCCTCATTCTAATCTCTGGATTCATTAAAGTTCATATTGCTATTCTGACAGTTTGTAGTTAGTCCACAGTTACATTTCAAGTTGACTGATGGA------------------------------TACTATG-------------AAATTAACTTAGTGTTTTCT-ACTAATTAGAAACTTAAAGGTGTA----------AGAAACTCACATACTG i mm10.chr5 I 295 C 0 s canFam3.chr3 3705568 286 - 91889043 GAAAAAAACACTCATG----------CCATTATA------TGGTTTTGTGTATTCCATCTTTCCAATGATACAGAAAGATTCAGGAAGTCACAAGTTCTCACT-TAAGCTTTGGATTCTTTAAAATGCCTAGTAACA----GATAATTTACAGATGATCCATAAATACCTGATGAATTAACTGTTAAGCTTTTATATTACATATACTATTATCTTAGATACTAGATATAATATAAAGGAAGTAAATTGTGTATGTTGT-ACTATTTATACACTCAAATGTGAAAGAAGAGTAGGGAGGCTTATtt-ttt i canFam3.chr3 C 0 I 194 a score=522646.000000 s hg38.chr4_KI270790v1_alt 4088 165 + 220246 AACTTCAGGCAAAATACTCAGCCACTTTCCCAACCCCCATAAAAATATTTAAAAAATGACAGATGCCTC-ACAAAATAAGTGGTATCCTAAATAATTTACTCATTGGTATAGCGGCAGCTCATTTCCCAGAATCTGTAATGACATTTG-TTTTTTTATTTAAAGGAT s panTro4.chr4 21390485 166 + 193495092 AACTTCAGGCAAAATACTCAGCCACTTTCCCAACCCCCATAAAAATATTTTAAAAATGACAGATGCCTCCACAAAATAAGTGGTATCCTAAATAATTTACTCATTGGTATAGCGGCAGCTCATTTCCCAGAATCTGTAATGACATTTG-TTTTTTTATTTAAAGGAT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21567299 165 + 198332218 AACTTCAGGAAAAATACTCAGCCACTTTCCCAACCCCCATAAAAATATTTAAAAAATGAAAGATGCCTC-ACAAAATAAGTGGTATCCTAAATAATTTACTCATTGGTATAGTGGCAGCTCATTTCCCAGAACCTGTAATGACATTTG-TTTTTTTATTTAAAGGAT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20180325 165 - 85365473 AACTTCAGGAAAAATACTCAGCCACTTTCCCAACCCGCATAAAAATATAAAACAAATGAAAGATGCCTC-ACAAAATAAGTGGTATCCTAGATAATTTACTCATTGGTATAGTGGCAGCTCATTTCCCAGAACCTGTAATGACATTTG-TTTTCTTATTTAAAGGAT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16645388 164 + 184069350 AACTTCAGGAAAAATACTCAGCCACTTTCCCAACCCCCATAAAAATA-TAAAAAAAAGAAAGATGCCTC-ACAAAATAAGTGGGATCCTAGATAATTTACTCATTGGTATAGCACAAGCTCATCTTCCAGAACCTGTAATGACATTTG-TTTTTTTATTTAAAGGAT i rheMac3.chr5 C 0 I 310 s macFas5.chr5 20687647 164 + 189454096 AACTTCAGGAAAAATACTCAGCCACTTTCCCAACCCCCATAAAAATA-TAAAAAAAAGAAAGATGCCTC-ACAAAATAAGTGGGATCCTAGATAATTTACTCATTGGTATAGCACAAGCTCATCTTCCAGAACCTGTAATGACATTTG-TTTTTTTATTTAAAGGAT i macFas5.chr5 C 0 I 309 s papAnu2.chr5 16281509 164 + 178775436 AACTTCAGGAAAAATACTCAGCCACTTTCCCAACccccataaaaata-taaaaaaaagaaagatgcctC-ACAAAATAAGTGGGATCCTAGGTAATTTACTCATTGGTATTGCACAAGCTCATCTCCCAGACCCTGTAAtgacatttg-tttttttatttaaaggat i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19768798 166 - 48547382 AACTTCAGGAAAAATACTCAGCCACTTTCCCAACCCCCATAAAAATATTAAAAAAAAGAAAGATGCCTC-ACAAAATAAGTGGGATCCTAGATAATTTACTCATTGGTATAGCAGAAGCTCATCTCCCAGAACCTGTAATGACATTTGTTTTTTTTATTTAAAGGAT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21115725 158 - 190850796 AACCTCAGGAAAAATGCTCAACCACTTTCCCAACCC-CATAAAA----TAAAAAAATGAAAGATACCTC-ACAAAATAAGTGATATCCTAAAGAGTTGATTCACTGGTAGAGCAGCAGCTCATTTCCCA-AACCTGTAACCACATTTG--TTTTTTATTTAAAAGAT i calJac3.chr3 C 0 C 0 s mm10.chr5 49109627 148 + 151834684 AGCATCAAGAAAA-----TAATCATTTCTGAATCCCCCATAAAAATA---GAAAAGTGAAAGCTGAGGC-ACAAAGTGCTTG---TGTCAAACAAAGGAC----CGACAAAGAGACATCAGGTTTTTCAAAGCATATAAAGATATATG---CTTTGATCTGAGACAA i mm10.chr5 C 0 I 1 s canFam3.chr3 3706048 155 - 91889043 AACTCCGGGGAAAATACCCAACCACTTCCTAAATCCCCATAAACGTA---GAAAAATGAAAGACGCCTC-ACAAAATAACCAGTATCCGAGATAGTTAA-TCGCTGGTATAGAGATATCTCATTTCCCAGGA----GAGTATTATT---TTCTTTTCTTTAAGCAAT i canFam3.chr3 I 194 C 0 a score=208651.000000 s hg38.chr4_KI270790v1_alt 4253 54 + 220246 AAGAATACAGCAGTGCTCATGTTATCACTAGGGTAATAATTATTGTTGCAAAAA s panTro4.chr4 21390651 54 + 193495092 AAGAACACAGCAGTGCTCATGTTATCACTAGGGTAATAATTATTGTTGCAAAAA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21567464 54 + 198332218 AAGAATATAGCAGTGTTCATGTTATCACTAGGGTAATAATTATTGTTGCAAAAA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20180490 54 - 85365473 AAGAATACAGCAGTGTTCATGTTATCACTAGGGTAATAATTATTGTTGCAAAAA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16645862 54 + 184069350 aagaaTACAGCAGTGTTCATGTTATCACTAGGGTCATAATTACTGTTGCAAAAA i rheMac3.chr5 I 310 C 0 s macFas5.chr5 20688120 54 + 189454096 aagaaTACAGCAGTGTTCATGTTATCACTAGGGTCATAATTACTGTTGCAAAAA i macFas5.chr5 I 309 C 0 s papAnu2.chr5 16281673 54 + 178775436 aAGAATACAGCAGCGTTCATGTTATCACTGGGGTCATAATTACTGTTGCAAAAA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19768964 54 - 48547382 AAGAATACAGCAGTGTTCATGTTATCACTGGGGTCATAATTACTGTTGCAAAAA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21115883 54 - 190850796 AAGAATACAGCAGTGTTCATGTTATCACTGGGGTAATAATTATTGTTGCAAAAA i calJac3.chr3 C 0 C 0 s mm10.chr5 49109776 52 + 151834684 --GAGAACAATGGTGTTCATGTTATCACTGAAACAATAGTTTCTGATGAAAAAA i mm10.chr5 I 1 I 431 s canFam3.chr3 3706203 48 - 91889043 ATAAATATAACAG------TGTTATCTCCAGGGTAATAATTATCATTAAGAAAT i canFam3.chr3 C 0 C 0 a score=64965.000000 s hg38.chr4_KI270790v1_alt 4307 23 + 220246 GCA----GCTCCTATTCTTCTGGTTGT s panTro4.chr4 21390705 23 + 193495092 GCA----GCTCCTATTCTTGTGGTTGT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21567518 23 + 198332218 CCA----GCTCCTATTCTTGTGGTTCT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20180544 23 - 85365473 GCA----GCTCCTATTCTTGTGGTTGT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16645916 23 + 184069350 GCA----GCTCCTGTTCCTGTAGTTGT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20688174 23 + 189454096 GCA----GCTCCTGTTCCTGTAGTTGT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16281727 23 + 178775436 GCA----GCTCCTGTTCCTGTAGTTGT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19769018 23 - 48547382 GCA----GCGCCTATTCCTGTAGTTGT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21115937 24 - 190850796 GCAT---GCTCCTATTCTTTTGATTGT i calJac3.chr3 C 0 C 0 s canFam3.chr3 3706251 24 - 91889043 ---GTGTGCTCCTATGCTTGTGGTTGC i canFam3.chr3 C 0 C 0 e mm10.chr5 49109828 431 + 151834684 I a score=1417326.000000 s hg38.chr4_KI270790v1_alt 4330 427 + 220246 TTTAAATTGGGGATTCAGAGGTGTAGGAA--GAAATTATAGATTATTATTCTTTGCTTCT-TAAGTGATGCACTCTTTATATACAACTGAAATAATTAATAGAAATTCAATCTTCAAGTTATTGTGACATATTTTAGGAAATCAGCAGTAATTATTTCCTATCTAATTTTTATAATCATTAGTAATCAGG-TAAGAGTTTATCTTGTTTTGAAAATTAAATTTTATTGAGCTTATAAACTACATTACAACAAAGAAAAATAAGGCAATTTTCTTATTACTAAATCAAAA-----------------ACATTATCCAAT-------TTTTTTTAACTGGAAGT-TTTCTTCGATGAATGAATATGCAGATGG-CATATGAATGGATGCCATCATATGATGAAAGGATCCATCATGAAAGGATGGATATGTAGACAAACATATGAAT---AAGCACCtgata s panTro4.chr4 21390728 427 + 193495092 TTTAAATTGGGGATTTAGAGGTGTAGGAA--GAAATTATAGATTATTATTCTTTGCTTCT-TAAGTGATGCACTCTTTATATACAACTGAAATAATTAATAGAAATTCAATCTTCAAGTTATTGTGACATATTTTAGGAAATCAGCAGTAATTATTTCCTATCTAATTTTTATAATCATTAGTAATCAGG-TAAGAGTTTATCTTGTTTTGAAAATTAAATTTTATTAAGCTTATAAATTACATTACAGCAAAGAAAAATAAGGCAATTTTCTTATTACTAAATCAAAA-----------------ACATTATCCAAT-------TTTTTTTAACTGGAAGT-TTTCTTCGATGAATGAATATGCAGATGG-CATATGAATGGATGCCATCATATGATGAAAGGATCCATCATGAAAGGATGGATATGTAGACAAACATATGAAT---AAGCACCtgata i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21567541 427 + 198332218 TTTAAATTGGGGATTTAGAGGTGTAGGAA--GAAATTATAGATTATTATTCTTTGCTTCT-TAAGTGATGCACTCTTCATATACAACTGAAATAATTAATAGAAATTCAATCTTCAAGTTATTGTGACATATTTTAGGAAATCAGCAGTAATTATTTCCTATCTAATTTTTATAATCATTAGTAATCAGG-TAAGAGTTTATCTTGTTTTGAAAATAAAATTTTATTAAGCTTATAAATTACATTACAACAAAGAAAAATAAAGCAATTTTCTTATTACTAAATCAAAA-----------------ACATTATCCAAT-------TTTTTTTAACTGGAAGT-TTTCTTGGATTAATGAATATGCAGACGG-CATATGAATGGATGCCATCATATGATGAAAGGATCCATCATGAAAGGATGGATATGTAGACAAATATATGAAT---AAGCACCtgata i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20180567 423 - 85365473 TTTAAATTGGGGATTTAGAGGTATAGGAA--GAAATTATAGATTATTATTCTTTGCTTCT-TAAGTGATGCACTCTTTATATACAACTGAAA----TAATAGAAATTCAATCTTCAAGTTATTGTGACATATTTTAGGAAATCAGCAGTAATTATTTCCTATCTAATTTTTATAATCATTAGTAATCAGG-TAAGAGTTTATCTTGTTTTGAAAATTAAATTTTATTAAGCTTATAAATTACATTACAACAAAGAAAAATACATCAATTTTCTTATTGCTAAATCAAAA-----------------ACATTATCCAAT-------TTTTTTTAACTGGAAGT-TTTCTTGGATCAATGAATACACAGATGG-CATATGAATGGATGCCATCATATGATGAAAGGATCCATCATGAAAGGATGGATATGTAGACAAATATATGAAT---AAGCACCtgata i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16645939 398 + 184069350 TTTAAATTGGGGATTTAGAGGTGTAGGAA--GAAATTATAGATTATTATTCTTTGCTTCT-TAAGTGATGCACGCTTTATATACAACTGAAATGATTAATAGAAATTCAATCTTCAAGTTATTGTGACATATTTTAGGAAACCAGCAGTAATTATTTCCTATCTAATTTTTATAATCATTAGTAATCAGG-TAAGTGTTTATCTTGTTTTGAAAATTAAATTGTATTAAGCTTATAAATAACATTACAACAAAGAAAAATAAAGCAATTTTCTTATTACTAAATCAAAA-----------------ACATTATCTAA--------TTTTTTTAACTGGAAGT-TTTCTTTGATGAATGAATATGCAGATGG-CATACAAACA----------------------------TATGAAAGGATGGATATATAGACAAATATATGAAT---AAGCACCtgata i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20688197 398 + 189454096 TTTAAATTGGGGATTTAGAGGTGTAGGAA--GAAATTATAGATTATTATTCTTTGCTTCT-TAAGTGATGCACGCTTTATATACAACTGAAATGATTAATAGAAATTCAATCTTCAAGTTATTGTGACATATTTTAGGAAACCAGCAGTAATTATTTCCTATCTAATTTTTATAATCATTAGTAATCAGG-TAAGAGTTTATCTTGTTTTGAAAATTAAATTGTATTAAGCTTATAAATAACATTACAACAAAGAAAAATAAAGCAATTTTCTTATTACTAAATCAAAA-----------------ACATTATCTAA--------TTTTTTTAACTGGAAGT-TTTCTTTGATGAATGAATATGCAGATGG-CATACAAACA----------------------------TATGAAAGGATGGATATATAGACAAATATATGAAT---AAGCACCtgata i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16281750 398 + 178775436 TTTAAATTGGGGATTTAGAGGTGTAGGAA--GAAAttatagattattattttttgcttct-taAGTGATGCACGCTTTATATACAACTGAAATGATTAATAGAAATTCAATCTTCAAGTTATTGTGACATATTTTAGGAAACCAGCAGTAATTATTTCCTAtctaatttttataatcattAGTAATCAGG-TAAGAGTTTatcttgttttgaaaattaaattgtattaagCTTATAAATAACattacaacaaagaaaaataaagcaattttctTATTACTAAATCAAAA-----------------Acattatctaa--------tttttttaactggAAGT-TTTCTTTGATGAATGAATATGCAGATGG-CATACAAACA----------------------------TATGAAAGGATGgatatatagacaaatatatgaat---aagcacctgata i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19769041 399 - 48547382 TTTAAATTGGGGATTTAGAGGTATAGGAA--GAAATTATAGATTATTATTCTTTGCTTCT-TAAGTGATGCACGCTTTATATACAACTGAAATGATTAATAGAAATTCAGTCTTCAAGTTATTGTGACATATTTTAGGAAATCAGCAGTAATTATTTCCTATCTAATTTTTATAATCATTAGTAATCAGG-TAAGAGTTTATCTTGTTTTGAAAATTAAATTTTATTAAGCTTATAAATAACATTACAACAAAGAAAAATAAAGCAATTTTCTTATTACTAAATCAAAA-----------------ACGTTATCTAAT-------TTTTTTTAACTGGAAGT-TTTCTTTGATGAATGAATATGCAGATGG-CATATGAACA----------------------------TATGAAAGGATGGATATATAGACAAATACATGAAT---AAGCACCtgata i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21115961 394 - 190850796 ----AATTGGGGATTTTGAGGTGTAGAAA--GGAATTATAGATTATTAGTCTTTGCTTCT-TAAGTGATGCATGCTTTACATATAACTGTAATGATTAATAGAAATTCAATCTTCAAGTTATTATGACATGTTTTAGGAAATGAGCAGTAATTATTTCCTATCTAATTTTTATAATCGTTAGTAATCAGG-TAAGACTTTATCTTGTTTTGCAAATTAAATTTTATAAAGCTTATAAATTACATTACAACAAA-AAAAATTGAGCAATTTTCTTACTACTAAATCAAAA-----------------ACATTATCCAAT-------TTTTTTTTACTGGACGT-TTTCTTGAATGAATGAATATGCAGATGG-CATATGAATG----------------------------TACCTATGGATGGCTATGTAGACAAATATATAAAT---AAGCACCtaata i calJac3.chr3 C 0 C 0 s mm10.chr5 49110259 404 + 151834684 TTTAAGTAGCGGATCTGTAGGTAGAGAAACCAAGATTCTAAACTA-------------CT-TAAGTAACAGAAGTTTAA---ATAATCAAAATTATTCTTAGCAAT--AA-----AAGATACTGGGACATATTTTAGTGAATTAACAGTAGTCATATTTT-TCTAATTATTACAA----TAGTACCTAGG-TAATAA-TAATTTTG-TCAGGAAATGAAATTTTATGAAGTTTATAAACCACATTACCACAGAGAAAAGTCAACTAACTTCAATACTGTTAAATTAAGACTAGCTGAcagtccatcaccttaatcactcggccacctcatTCCAGTAGAAGA-GTTCTGGTataaatgaataaacaaatgg----atgtatg---------aaataatagaatg------tac-aaaagatgaatgtataaaagaat---tgaatTTAAAACTCATGACA i mm10.chr5 I 431 C 0 s canFam3.chr3 3706275 392 - 91889043 CCTAAATTGGAGATTTAGAAATGTAG-AA--GGAATTACAGAACATGCCTCTTTGTTTTTCTAAGTGGGGAAAACTTTATATACAATTGAATTAATTAATAGCAATTCAACCCTCAAGTTATTGTGGCATATTTTAGTAAATCAGCCATAATCATTTCCTGTCTAATCCTTACAATCAATAGTAATCAGGAAAAAAGTTGTTCTTGTTTTGAAAATTAAATTATATTAATCTTACAAATGATATTTGTACAAAGAAAAATAAAACAA-TTTCATATTACTAAAAAAAGA-----------------AAATTAGTCACTTC-----TTTTTTTTGCTGGTTATGTTTTTTCAATGGATTCCTATATGAGTAGATCCATGAATG----------------------------TATGGAAGGAAGGATACGTA-----------GAAT---AAGCATCTAATA i canFam3.chr3 C 0 I 184 a score=7416.000000 s hg38.chr4_KI270790v1_alt 4757 2 + 220246 tg s panTro4.chr4 21391155 2 + 193495092 tg i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21567968 2 + 198332218 tg i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20180990 2 - 85365473 tg i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16646337 2 + 184069350 tg i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20688595 2 + 189454096 tg i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16282148 2 + 178775436 tg i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19769440 2 - 48547382 ta i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21116355 2 - 190850796 tg i calJac3.chr3 C 0 C 0 s mm10.chr5 49110663 2 + 151834684 TG i mm10.chr5 C 0 I 3 e canFam3.chr3 3706667 184 - 91889043 I a score=927051.000000 s hg38.chr4_KI270790v1_alt 4759 340 + 220246 ttttggatctgtgtccccacccaaatcacagcttgaattgtaataatccctacatgtcatgacatggaccctgtggtaggtaactgaatcatgcaggtaggtttttccagggctgatcttgtgatagtgaataagtctcataatatctgatggtttaataaaggggagttcctctgcacatgctccctcttgcctgccgccatgtaagatgtccctttgctcttccttcatcttctaccatgattttgaggcctctccagc-----------catgtggaactgggaatccattaaacctctttc-tttataaattatgcagtctcgagtatgtcttgattagcagcatggg s panTro4.chr4 21391157 341 + 193495092 ttttggatctgtgtccccacccaaatcacaccttgaattgtaataatccctacatgtcatgacatggaccctgtggtaggtaactgaatcatgcaggtaggtttttccagggctgatcttgtgttagtgaatcagtctcataatatctgacggtttaataaagaggagttcctctgcacatgctccctcttgcctgccgccatgtaagatgtacctttgctcttccttcatcttctaccatgattttgaggcctctccagc-----------catgtggaactgtgagtctattaaacctctttcctttataaattatgcagtctcgagtatgtcttgattagcagcatggg i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21567970 341 + 198332218 tcttggatctgtgtccccacccaaatcacaccttgaattgtaataatccctacgtgtcatgacatggatcctgtggcaggtaactgaatcatgcaggtaggtttttctagggctgatcttgtgatagtgaataagtctcataatatctgatggtttaataaagaggagttcctctgcacatgctccctcttgcctgccgatatgtaagatgtccctttgctcttccttcatcttctaccatgattatgaggcctctccagc-----------catgtggaactgtgagtccattaaacctctttccttcataaattatgcagtctcgagtatgtcttgattagcagcatggg i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20180992 340 - 85365473 ttttggctctgtgtccccacccaaatcacaccttgaattgtaatattccctaggtgtcatgacatggaccctgtggaaggtaactgaatcacacaggtaggtttttctagggctgatcttgtgatagggaataagtctcataatatctgatggtttaataaagaagagttcctctgcacatgctccctcttgcctgccgccatgtaagatgtccctttgttcttccttcatc-tctaccatgactatgaggcctctctagc-----------catgtggaactgtaagtccattaaacctctttcctttataaattatgcagtctcgagtatgtcttgattagcagcatgag i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16646339 328 + 184069350 ttttggctctgtgtccccacccaaatcacaccttgaattgtaataatccctacgtgtcatggaatggaccctgtgggaggtaactgaatcatgcaggtgggtttttctagggctgatcttgtgacagtgaataagtctcatggtatctgatggtttaataaagaggagttcctctgcacatgctccctcttgcctgctgtcatgtaagacatcc-tttgc----------tcttctgccatgattgtgaggcctccacagctacatggaactcatgtagaactgtgagtccattaaacctcttttctttataaattatgcagtcttgagtatgtcttga------------- i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20688597 328 + 189454096 ttttggctctgtgtccccacccaaatcacaccttgaattgtaataatccctacgtgtcatggaatggaccctgtgggaggtaactgaatcatgcaggtgggtttttctagggctgatcttgtgacagtgaataagtctcatggtatctgatggtttaataaagaggagttcctctgcacatgctccctcttgcctgctgccatgtaagacatccgtttgctcttccttcatcttctgccatgattataaggcctctccagc-----------catgtagaactgtgagtccattaaacctcttttctttataaattatgcagtcttgagtatgtcttga------------- i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16282150 328 + 178775436 ttttggctctgtgtccccacccaaatcacaccttgaattgtaataatccctacGTGTCATGGAATGGGccctgtgggaggtaactgaatcatgcaGGTGGGTTTTTCTAGGGCTGaacttgtgatagtgaataagtctcatggtatctgatggtttaataaagaggagttcctctgcacatgctccctcttgcctgccgccatgtaagacatccctttgctcttcctttatcttctaccatgattataaggcctctccagc-----------catgtggaactgtgagtccattaaacctcttttctttataaattatgcagtcttgagtatgtcttga------------- i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19769442 328 - 48547382 gtttggttctgtgtccccacccaaatcacaccttgaattgtaataatccctacatgtcatggaatggaccctgtgggaggtaactgaatcatgcaggtaggtttttctagggctgatcttgtgatagtgagtaagtctcatggtatctgatggtttaataaagaggagttcctctgcacatgctccctcttgcctgccgccatgtaagacatccgtttgctcttcctttatcttctaccatgattatgaggcctctccggc-----------catgtggaactgtgagtccattaaacctcttttctttataaattatgcagtcttgagtatgtcttga------------- i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21116357 338 - 190850796 gcttggctctgtgt-cccactcaaatctcacattgaattgtaataatccctacatgttgtaggagggacactgtgggaggtaactgaataataggggtggttttttctcatgctgatcttgtcatagttaataagtctcatgaaatctgatggttttataaaggggagttcctctgcacatgct--ctcttgcctgtccccacatacaacacccctttgctccccctttatcttccaccatgattatgaagcctcccaagc-----------catgtggaactgtgagtccattaaatctctttcctttataaattacccagtctcgaacatgtcttgattagcagcatggg i calJac3.chr3 C 0 C 0 e mm10.chr5 49110665 3 + 151834684 I e canFam3.chr3 3706667 184 - 91889043 I a score=47066.000000 s hg38.chr4_KI270790v1_alt 5099 31 + 220246 aacagactaatataGCATTTAATAATA--TTCT s panTro4.chr4 21391498 31 + 193495092 aacagactaatataGCATTTAATAATA--TTCT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21568311 31 + 198332218 aacagactaatataGCATTTAATAATA--TTCT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20181332 31 - 85365473 aacagactaatataGCACTTAATAATA--TTCT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16646667 21 + 184069350 -------tAATAT---TCTTAATAATA--TTCT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20688925 21 + 189454096 -------tAATAT---TCTTAATAATA--TTCT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16282478 21 + 178775436 -------TAATAT---TCTTAATAATA--TTCT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19769770 21 - 48547382 -------tAATAT---TCTTAATAATA--TTCT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21116695 33 - 190850796 aacagactgatacaGCACTTAATAATATTTTCT i calJac3.chr3 C 0 C 0 s canFam3.chr3 3706851 25 - 91889043 aataaataaataaaatctttaaaaa-------- i canFam3.chr3 I 184 C 0 e mm10.chr5 49110665 3 + 151834684 I a score=2270194.000000 s hg38.chr4_KI270790v1_alt 5130 700 + 220246 CATCTGTATGTAACAAAATTGAAGTTATGCACCTTTCC--------TTGATTGATTGatatgtatatcaatctattcatatat----atag-att------tatatatatataGCTTATAACTTTAATTTGTCTTAATAATCATGTATCACCTATTGTTCTTGATATTGCACCACAAGGAACACAAGTGTGAAAAAGAATTCTATGAGATCTAGGGGTTCATATTCCAGCACAATGGAGGCCATATTTACAGAGACTAAG--------------TT--------AAACTCCATACATTTTCCACAAACAAAAT-TTAACAATTTTTAAGGAAATATTATT-------------------------------------------------AAAGAACGCTGAGAGCACTCCAGGTTGTCTATGCTTCTACTCATTGAAACAACTCACTCCTCCAGTAGCAGATGAGTTTTAATGAAATGCCTGGGCAATGTGAGGAAATGCTTTTTCCTTATCAGATATAACCCACAACAAATCACAAAAGGGTACTTTTT-AATAGTGTTTTCAGGGAACGGGTCTACCCCTACCCTTAGGCTGACAATAATGCTTTAAGCTTTTCCTACATACATCTGCACACTTAAGAGGAAAGAATTTGGCTTATAACATTTTAAAACTCATTAATTAGGATGCCACCATTACAAGGGTTATGGCATTCAGATAA-TGCCTAGGCTGCCGTTTCCATTTGAGTAAAG-------TAATGGTAGTAAGTGAACATATACTGTCCAA-----GATAATAATGAA s panTro4.chr4 21391529 703 + 193495092 CATCTGTATGTAACAAAATTGAAGTTATGCACCTTTCC--------TTGATTGATTGatatgtatatcaatctattcatatat----atag-att--gatttatatatatataGCGTATAACTTTAATTTGTCTTAATAATCATGTATCACCTATTGTTCTTGATATTGCACCACAAGGAACACAAGTATGAAAAAGAATTCTATGAGATCTAGGGGTTCATATTCTAGCACAATGGAG-CCATATTTACAGAGACTAAG--------------TT--------AAACTCCATACATTTTCCACAAACAAAAT-TTAACAATTTTTAAGGAAATATTATT-------------------------------------------------AAAGAACGCACAGAGCACTCTAGGTTGTCTATGCTTCTACTCATTGAAACAACTCACTCCTCCAGTAGCAGATGAGTTTTAATGAAATGCCTGGGCAATGTGAGGAAATGCTTTTTCCTTATCAGATATAACCCACAACAAATCACAAAAGCGTATTTTTT-AATAGTGTTTTCAGGGAACGGGTCTACCCCTACCCTTAGGCTGACAATAATGCTTTAAGCTTTTCCCACATACATCTGCACACTTAAGAGGAAAGAATTTGGCTTATAACATTTTAAACCTCATTAATTAGGATGCCACCATTACAAGGGTTATGGCATTCAGATAA-TGCCTAGGCTGCCGTTTCCATCTGAGTAAAG-------TAATGGTAGTAAGTGAACATACACTGTCCAA-----GATAATAATGAA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21568342 708 + 198332218 CATCTGTATGTAACAAAATTGAAGTTATGCACCTTTCC--------TTGATTGATTGATATGTATATCAATCTATTCATATATAGAGAGAG-ATT--GATTTATATATATAAAGCGTATAACTTTAATTTGTCTTAATAATCATGTATCACCTATTATTCTTGGTATTGCACCACAAGGAACACAAGTACGAAAAAGAATTCTATGAGATCTAGGATTTCATATTCTAGCACAATGGAGGCCGTATTTACAGAGACTAAG--------------TT--------AAACTCCATACATTTTCCACAAACAAAAT-TTAACAATTTTTAAGGAAATATTATT-------------------------------------------------AAAGAACACACAGAGCACTCCAGGTTGTCTATGCCTCTACTCATTGAAACAACTCACTTCTCCAGTAGCAGATGAGTTTTAATGAAATGCCTGGGCAATTTGAGGAAATGATTTTTCCTTATCAGATATAACCCACAACAAATCACAAAAGGGTACTTTTT-AATAGTGTTTTCAGGGAACAGGTCTACCCCTACCCTTAGGCTGACAATAATGCTTTAAGCTTTTCCTACATACATCTGCACACTTAAGAGGAAAGAATTTGGCTTATAACATTTTAAACCTCATTAATTAGGATGCCACCATTACAAGGGTTATGGCATTCAGATAA-TGCCTAGGCTGCAGTTTCCACCTGAGTAAAG-------TAATGGTAGTAAGTGAACATATACTGTCCAA-----GACAATAATGAA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20181363 706 - 85365473 CATCTGTATGTAACAAAATTGAAGTTATGCACCTTTCC--------TTGATTGATTGatatgtatatcaatttattcatatac----atat-atagagatttatatatataAAGCGTGTGACTTTAATTTGTCTTAATAATCATGTATCACCTATTATTCTTGGTATTGCACCACAAGGAACACAAGTATGAAAGAGAATTCTATGAGATCTAGGGGTTCATATTCTAGCACAATGGAGGCCCCATTTACAGAGACTAAG--------------TT--------AAACTCCATACATTTTCCACAAACAAAAT-TTAACAATTTTTAAGGAAATATTATT-------------------------------------------------AAAGAACGCACAGAGCACTCCAGGTTGTCTATGCTTCTACTCATTGAAACAACTCACTCCTCCAGTAGCAGATGAGTTTTATTGAAATGCCTGGGCAATTTGAGGAAATGCTTTTTCCTTATCAGATATAACCCACAACAAATCACAAAAGGGTACTTTTT-AATAGTGTTTTCAGGGAACAGGTCTACCGCTACCCTTAGGCTGACAATAATGCTTTAAGCTTTTCCTACATACATCTGCACACTTAAGAGAAAAGAATTTGGCTTACAACATTTTAAACTTCATTAATTAGGATGCCACCATTACAAGGGTTATGGCACTCAGATAA-TAGCTAGGCTGCAGTTTCCATCTGAGTAAAG-------TAATGGTAGTAAGTGAACATATACTGTCCAA-----GATAATAATGAA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16646688 749 + 184069350 CATCTGTATGTAACATAATTGAACTTATGCACCTTTCC------------TTGATTGATATGTATATCAATCTATTCATATAT--ATATAGTATT--GAC--ATATATATAAAGCATATAACTttaattcatcttaataatcatgtatcacctattattctaggtactgcactacaaggaacacaagtatgaaaaggaattctatgagatccaggggctcatattctagcataatggaggCCATATTTACAGAGACTAAG--------------TT--------AAACTCCATAGATTTTCCACAAACAAAGT-TTAACAATTTTTAAGGAAATACTATTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAGGATATACATAGCACTCCAGGTTGTCTATGCTTCTACCCATTGAAACAACTCACTG-TCCAGTAGCAGATGAGTTTTAATGAAATACCTGAGCAATTTGAGGAAATGCTTTTTCTTTATCGGATATAATCCACAACAAATCACAAAAGGGTACTTTTT-AATAGTGTTTTCAGGGAACAGGTCTACCCCTACCCTTAGGCTGACAATAATGCTTTAAGCTCTTCCTATATACATCTGCACACTTACGAGGAAATAATTTAGCTTATAACATTTTAAACCTCATTAATTAGGATGCCACCATTACAAGGGTGATGGCATTCATATAA-TGCCTAGGCTGCAGTTTCCATCTAAGTAAAG-------TAATGGTAGTAAGTGAACATATACTGTCCAA-----GATAATAATGAA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20688946 700 + 189454096 CATCTGTATGTAACATAATTGAACTTATGCACCTTTCC------------TTGATTGatatgtatatcaatctattcatatat--atatagtatt--gac--atatatataaagcatataACTTTAATTCATCTTAATAATCATGTATCACCTATTATTCTAGGTACTGCACTACAAGGAACACAAGTATGAAAAAGAATTCTATGAGATCCAGGGGCTCATATTCTAGCATAATGGAGGCCATATTTACAGAGACTAAG--------------TT--------AAACTCCATAGATTTTCCACAAACAAAGT-TTAACAATTTTTAAGGAAATACTATT-------------------------------------------------AAAGGATATACATAGCACTCCAGGTTGTCTATGCTTCTACCCATTGAAACAACTCACTG-TCCAGTAGCAGATGAGTTTTAATGAAATACCTGAGCAATTTGAGGAAATGCTTTTTCTTTATCAGATATAATCCACAACAAATCACAAAAGGGTACTTTTT-AATAGTGTTTTCAGGGAACAGGTCTACCCCTACCCTTAGGCTGACAATAATGCTTTAAGCTCTTCCTATATACATCTGCACACTTACGAGGAAAGAATTTAGCTTATAACATTTTAAACCTCATTAATTAGGATGCCACCATTACAAGGGTGATGGCATTCATATAA-TGCCTAGGCTGCAGTTTCCATCTAAGTAAAG-------TAATGGTAGTAAGTGAACATATACTGTCCAA-----GATAATAATGAA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16282499 703 + 178775436 CATCTGTATGTAACATAATTGAAGTTATGCACCTTTCC--------ttgattgattgatatgtatatcaatctattcatatat--atatag-att--gac--atatatataaagcatataaCTTTAATTCATCTTAATAATCATGTATCACCTATTATTCTAGGTACTGCACTACAAGGAACACAAGTATGAAAAAGAATTCTATGAGATCCAGGGGCTCATATTCTAGCATAATGGAGGCCATATTTACAGAGACTAAG--------------TT--------AAACTCCATAGATTTTCCACAAACAaagt-ttaacaatttttaaggAAATACTATT-------------------------------------------------AAAGGATATACATAGCACTCCAGGTTGTCTATGCTTCTACCCATTGAAACAACTCACTG-TCCAGTAGCAGatgaattttaatgaaatacCTGAGCAATTTGAGGAAATGCTTTTTCCTTATCAGATATAATCCACAACAAATCACAAAAGGGTACTTTTT-AATAGTGTTTTCAGGGAACAGGTCTACCCCTACCCTTAGGCTGACAATAATGCTTTAAGCTCTTCCTATATACATCTGCACACTTACGAGGAAAGAATTTAGCTTATAACATTTTAAACCTCATTAATTAGGATGCCACCATTACAAGGGTGATGGCATTCATATAA-TGCCTAGGCTGCAGTTTCCATCTAAGTAAAG-------TAATGGTAGTAAGTGAACATATACTGTCCAA-----GATAATAATGAA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19769791 708 - 48547382 CATCTGTATGTAACAAAATTGAAGTTGTGCACCTTTCC----TTGATTGATTGATTGatatgtatatcaatctattcatatat--atatag-att--gacttagatatataaagcatataACTTTAATTCATCTTAA-AATCATGTATCACCTATTATTCTAGGTATTGCACTACAAGGAACACAAGTATGAAAAAGAATTCTCTGAGATCTAGGGGCTCATATTCTAGCACAATGAAGGCCATATTTACAGAGACTAAG--------------TT--------AAATTCCATAGATTTTCCACAAACAAAGT-TTAACAATTTTTAAGGAAATACTATT-------------------------------------------------AAAGGACATACATAGCACTCCAGGTTGTCTATGCTTCTACCCATTGAAACAACTCACTG-TCTAGTAGCAGATGAGTTTTAATGAAATACCTGAGCAACTTGAGGAAATGCTTTTTCCTTATCAGATATAATCCACAACAAATCACAAAAGGGTACTTTTT-AATAGTGTTTTCAGGGAACAGGTCTACCCCTACCCTTAGGCTGACGATAATGCTTTAGGCTCTTCCTATATACATCTGCACACTTATGAGGAAAGAATTTAGCTTATAACATTTTAAACCTCATTAATTAGGATGCTACCATTACAAGGGTGATGGCATTCATATAA-TGTCTAGGCTGCAGTTTCCATCTAAGTAAAG-------TAATGGTAGTAAGTGAACATATACTGCCCAA-----GATAATAATGAA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21116728 705 - 190850796 CACTCCTATATAACAAAATTGAAGTTATGCCCCCTACCttgattgattgattgattgatATGTATAGCAATCTATTCACATAT----ATAG---T--Gat--ttatatataaaacatataattttaattCATCTTAATAATCATGTATAACCTATTATTCTAGGTATTGCACCACAAGGAACACAAGTATGAAAAAGAATTCTATGAGATCTAGGTGCTCATATTCTATCACAACGGAAGCCATATTTGCAGAGACTAAG--------------TT--------AAACTCCATAGATTTTCC----ACAAAGT-TTAACAACTTTTAAGGAAATATTATC-------------------------------------------------AAAGTATGCACAGAGCACTTCAGATTGTCTATGCTCCCACTCATTGAAACAACCCACTCCTCCAGTAGCAGATGAGTTTCAATGAAATGCCTAAGCAATTTGAGGAAATGCTTTTTCGTTATCAGATAAAAGCCACAACAAATCAGAAAAGGGTCCTTTTTAAACTGTGTTTTCAGGGAACAGGCCTGCCCCTACCCTTAGACTGACAATGATGCTTTAAGCTTTTCCTACATACATCTGCACACTTTAGAGGACAGGATTTGGCTCCTAACATTTTAAACCTCATTAATTAGAATGCCACCACTACAAGAGTTAGTGCACTGAGATCA-CGCCTAGGCTGCAGTTTCCCTCTAAGTAAAG-------TAATGGTAGTAAGGGAACAAACACTTCCCAA-----AATAGTAATGAA i calJac3.chr3 C 0 C 0 s mm10.chr5 49110668 636 + 151834684 CATCAATATGGAATAAAATTAAAGCCATATGCTTTTGC--------TTGATT--TGGATATGTA----------------------------ATT-----------------------------TAATTGATTTCAGTAGTCATGTGCCACTTATAACTCAGATCAGGGCATC-----TATGATATGTATGAACATTTTTTTTTTAATTCTCAGA--CTTGTTTTCTAAATGAATAGAGATT-TATTCACAGATTCTAGA--------------TTGGTGGCCGATATCCTATTGCTTAGCTATTTTCTAAATGTTAACAATTTTCAAAGAAACATGTTT-------------------------------------------------AAAGGATGCCCAGTGGAATCTAAACTGCAGCCTCTTTCACATTTCATACCAGTTCGCTCTTCCTTTATCAGGTAAATTTCAAGGAAATGGGCAAGTAATCTGGGGAAATGTTCTTTCCTTACTAGACCTAACACACAGCCAATCAC-AAAGTTTCCTTTCT-AA-AGTGCTTTCCAGGTATAGTGCTTCACTCTGCACTAGG-------TGGGGCTTTCAGCATTTTCCAC-TGCATCTAAACACTGAATAGAA--------GTCTTCTA----TATGAACGCCATGAATTATAATATCACTATTTGTAAGGCCAGAACATTTAGCTAACTGCTGTTGCTGCACTTTCCATCCAAGAAGAG-------TCCCGAGA-TAAGTTGCTCTCTGTTGTATTACTTTTGTTAATATTGAA i mm10.chr5 I 3 I 448 s canFam3.chr3 3706876 643 - 91889043 ----------aaaGAAAATTTAAGTTATATGCTTTTCC--------TTGATTGA-------------------------AGAC-------G-ATT----------------------------CGAGTTCATTTTTACAGTCCTGAATCATCCAATGCCCCAAACATCATGCTTCATGAGACAGAAATATGAATAAGACTTCTATGAGATCTGGGGGCTCAGATTCTAGCATACTGGAGGTCAAATTTACAAAAACTAAGCTTGCAGTCTGGTTTT--------TGACTCTGTGGATTTTCCACAAACA-----TCAACAGTTTTCA--GACATGTTACT-------------------------------------------------AAAGGATGCAAAGAGGATTCCCAGCTGCCAA-------AAACATT--AGCAACTCATGCTTCCACTATCAGATGCATTTCAGTGACATGATTGAGCAGTTTGGGGAGATATGTCTTCTTTCTGGGATATAACCCATAACAAATCACAAAGGGTT--TTTTT-AA-AGTGTTTTCAGAGGACAAGACTAACTCTGCACATAAGCTGACAATGTCACGGTAGGCTTTTCTTACACACATCAGTGTACCTAAGAGGACGGAATTGGGTCGACAGCATCTTGAGCCTCATTTAGAAGGACCTCATTCTTTCAGTGGTTGTGGTACCCTTAAAT-TGCCTAGGCTGTAGTTTCCTTCCAGGAAAAGTTGCCATTAATGGTAGTAAATGAACGTACATTTCCTGA-----GGTTGTGCTAGA i canFam3.chr3 C 0 C 0 a score=1318938.000000 s hg38.chr4_KI270790v1_alt 5830 413 + 220246 TATGATTT-GTTGGGTTGTTGATTATATTAAACATAAAT-----ACAAAACTGAATAGGACCTCCTAAGGGAGACCCTCAGTTATTCTGATATTGTTCTACTCATTCCCTTACCTTGGCTAATA--------------------------------TTTTTTTTA------------AAACAAGCAATAAGAAAAAGATGAAAGAATCAACAATTCCTACCACATTGAGACGTGGAATCCTTGGCCTATATTACTTTTACACTCATGGAAGATGTTGCAACATaatggaaggggcatggacttgggccgcaggaaggacttggttcaaattctggtcctgacatttctagtggggttgcccta----------ttttttaatcagtaaaattggactaaaacctatct--aaggattagtataaatgtgaaat---------------------aaatgatggatgtaaagagcctaccacagtagttggcatata s panTro4.chr4 21392232 413 + 193495092 TATGATTT-GTTGGGTTGTTGATTATATTAAACATAAAC-----ACAAAACTGAATAGGACCTCCTAAGGGAGACCCTCAGTTATTCTGATATTGTTCTACTCATTCCCTTACCTTGGCTAATA--------------------------------TTTTTTTTA------------AAACAAGCAATAAGAAAAAGATGAAAGAATCAACAATTCCTACCACATTGAGACGTGGAATCCTTGGCCTATATTACTTTTACACTCATGGAAGATGTTGCAAtgtgatggaaggggcatggacttgggccgcaggaaggacttggtttaaattctggtcctgacatttctagtggggttgcccta----------ttttttaatcagtaaaattggactaaaacctatct--aaggattagtataaatgtgaaat---------------------aaatgatggatgtaaagagcctaccacagtagttgacacata i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21569050 412 + 198332218 TATGATTT-GTTGGGTTGTTGATTATATTAAACATAAAT-----ACAAAAATGAATAGGACTTCCTAAGGGAGACCCTCAGTTATTCTGATATTGTTCTACTCATTCCCTTACCTTGGCTAATA---------------------------------TTTTTTTA------------AAACAAGCAATAAGAAAAAGATGAAAGAATCAACAATTCCTACCACATTGAGATGTGGAATCCTTGAGCTATATTACTTTTACACTCATGGAAGGTGTTGCAACgtaatggaaggggcatggacttgggccgcaggaagaacttggttcaaattctggtcttgacatttctagtgaggttgcccta----------ttttttaaccagtaaaattggactaaaacctatct--aaggattagtataaatgtgaaat---------------------aaatgatagatgtaaagaggctaccacagtagttggcacata i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20182069 411 - 85365473 TATGATTT-GTTGGGTCGTTGATTATATTAAACAGAAAT-----ACAAAAATTAATAGGACTTCCTAAGGGAGACCCTCAGTTATTCTGATATTGTTCTACTCATTCCCTTACCTTGGCTAATA---------------------------------TTTTTTTA------------AAACAAGCAATAAGAAAAAGATGAAAGAATCAACAATCCCTACCACATTGAGACGTGGAATCCTTGGCCTATATTACTTTTACACTCATGGAAGATGTtgcaacgtaatggaaggggcatggacttgggccacaggaagaacttgtttcaaattctggtcctgacatttctagtggggttgcccta----------ttttttaatcagtaaaattggactaaaacctatct--aaggattagtataaatgtgaaat---------------------aaatgattgatgtaaa-aacctaccacagtagttggcacata i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16647437 412 + 184069350 CATGTTTT-GTTGGGTTGTTGATTATACTAAACATAAAT-----ACAAAAATGATTAGGACTTCCTAAGGGAGTCCCTCAGTTATTCCGATATTATTCTACTCATTCCCTTACCTTGGCTAGTA---------------------------------TATTTTTA------------AAACAAGCAATAAGGAGAAGATGAAAGAATCAACAATTCGTACCACATTGAGACGTGGAATCCTTGGCCTATATTACTTTTACACTCATGGAAGAtggtgcaacataatggaaggggcatggacttgggccacaggaagaacttggttcaaattctggtcctgacatttctagtagggttgcccta----------ctttttaatcagtaaaattggactaaagcctatct--aaggattagtacaaatgtgaaat---------------------aaatgatggatgtaaagagcctaccacagtagttggcacata i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20689646 412 + 189454096 CATGTTTT-GTTGGGTTGTTGATTATACTAAACATAAAT-----ACAAAAATGATTAGGACTTCCTAAGGGAGTCCCTCAGTTATTCCGATATTATTCTACTCATTCCCTTACCTTGGCTAGTA---------------------------------TATTTTTA------------AAACAAGCAATAAGGAGAAGATGAAAGAATCAACAATTCGTACCACATTGAGACGTGGAATCCTTGGCCTATATTACTTTTACACTCATGGAagatggtgcaacataatggaaggggcatggacttgggccacaggaagaacttggttcaaattctggtcctgacatttctagtagggttgcccta----------ctttttaatcagtaaaattggactaaagcctatct--aaggattagtacaaatgtgaaat---------------------aaatgatggatgtaaagagcctaccacagtagttggcacata i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16283202 412 + 178775436 CATGTTTT-GTTGGGTTGTTGATTATActaaacataaat-----acaaaaatgattagGACTTCCTAAGGGAGTCCCTCAGTTATTCCGATATTATTCTACTCATTCCCTTACCTTGgctagta---------------------------------tattttta------------aaacaagcaatAAGAAGAAGATGAAAGAATCAACAATTCCTACCACATTGAGACGTGGAATCCTTGGCCTATATTATTTTTACACTCATGGAAGATGGTGCAACATAATGGAAGGGGCATGGACTTGGGCCACAGGAAGAACTTGGTTCAAATTCTGGTCCTGACATTTCTAGTAGGGTTGCCCTA----------CTTTTTAATCAGTAAAATTGGACTAAAGCCTATCT--AAGGATTAGTacaaatgtgaaat---------------------aaatgatGGATGTAAAGAGCCTACCACAGTagttggcacata i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19770499 412 - 48547382 CATGTTTT-GTTGGGTTGTTGATTATACTAAACATAAAT-----ACAAAAATGAATAGGACTTCCTAAGGGAGCCCCTCAGTTATTCCGATATTATTCTACTCATTCCCTTACCTTGGCTAGTA---------------------------------TATTTTTA------------AAACAAGCAATAAGAAGAAGATGAAAGAATCAACAATTCCTACCACATTGAGATGTGGAATCCTTGGCCTATATTACTTTTACACTCATGGAagatggtgcaacgtaatggaaggggcatggacttgggccataggaagaacttggtccaaattctggtcctgacatttctagtagggttgcccta----------ctttttaatcagtaaaattggactaaagactatct--aaggattagtacaaatgtgaaat---------------------aaatgatggatgtaaagagcctaccacactagttggcatata i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21117433 404 - 190850796 CATGTTTCGGTTGGATTGTTGATTATATTAAACATAAAT-----ACAAAAATGAAGAGGACTTTCTAAGAAAGCCCCTCAGTTATTCTGATATTGTTCTACTCATTCCCTTACCTTGGCTAACA---------------------------------TTTTTTTA------------AAACAAGCAATAGG---AAGACAAAAGGATCAACAATTCCTGCCACACTGAGACATGGAA----AAGTACAAAGTACTTTCCCACTca-ggaagatggtgcagtgtagtggaaggggcatggacttgggccgcagg-atcacttggttcagactctggtcctgacatttctagtagggttgcccta----------ttttttaacgggtaaaattgaactaaaacctatct--caggattagtataaatatgaaag---------------------aaatgatggaggtaaagagtctaccacagtagttggcacata i calJac3.chr3 C 0 C 0 s canFam3.chr3 3707519 487 - 91889043 CATGTTTAAGTTAGTATGTGGAACATGCaaaaaataaattaaaaaaaaaaCTGAAAAGAACTTTCTAAGAA----TCTCAGCCACTGTGATTCTCCTCTACC--TTTCCTTCCTCATCCCaatatatatatatgatattatatatttgtatattttttatttttattCAGCTTATTTAAATAAACAATGAGAGAGAGACAAAGGAGGTAATCCTTCCTATCATACTGAGCCATGAAGCCCTTGGCATATATTACACTTCAGCTCATAGAAGTTGATGCAGCATCATGATGAAGGTGCAGATTTGGGCAGCAGC-AGAACTTCATTCAAAACCTGGCCCTGAGTTTTCCAGTAGCATTACCCTATAGTGTTCTGTTTTTCAACTGGTAAGACTGAGATAAAACCAATCTCCCAGGATTACTATGAATATAAAGTATGCATGAAAGTACAAATGTAAAGTGATGGACTTAAAGAACCTACCAGACTAATTGGCACA-- i canFam3.chr3 C 0 C 0 e mm10.chr5 49111304 448 + 151834684 I a score=1343097.000000 s hg38.chr4_KI270790v1_alt 6243 363 + 220246 ataggtgttcaaaaattgtTAAATGACTCTTACATTGTAGCTGTTACAGACGTAAAATTCAATGGATAGAATAGAAACCATTTACAATGCCTTGAAAAACTC-AACTACGTCAGATTTAAA--AACTGATTTGTATAATCACGAAAAGGAAAAGTAGGACAATCACATTaaatattgtataatcagactttgcaaattcaatctgaatttctttctaattagtcaaaattagtgaggtATGGTTGTTGCATCTCTTAACTACTGTACCACAGGGTCCGGTCATCACCTGCTTCTATTTATGTTTGCTGTTCCCGTAAGGAATCCTCCTAGGTACAAGTCCCATTAATAGAAGCTGGAACATTGCCT s panTro4.chr4 21392645 363 + 193495092 ataggtgttcaaaaattgtTAAATGACTCTTACATTGTAGCTGTTACAGAGGTAAAATTCAATGGATAGAATAGAAACCATTTACAATGCCTTGAAAAACTC-AACTACGTCAGATTTAAA--AACTGATTTGTATAATCACGAAAAGGAAAAGTAGGACAATCACATTaaatattgtataatcagactttgcaaattcaatctgaatttctttctaattagtcaaaattagtgaggtATGGCTGTTGCATCTCTTAACTACTGTACCACAGGGTCCGATCATCACCTGCTTCTATTTATGTTTGCTGTTCCCGTAAGGAATCCTCCTAGGTACAAGTCCCATTAATAGAAGCTGGAACATTGCCT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21569462 363 + 198332218 ataggtgttcaaaaattgtTAAATGACTGTTACATTGTAGCTGTTACAGAGGTAAAATTCAATGGATAGAATAGAAACCATTTACAATGCCTTGAAAAACTC-AACTATGTCAGATTTAAA--AACTGATTTGTATAATCACAAAAAGGAAAAGTAGGACAATCACATTaaatattgtataatcaggctttgcaaattcaatctgaatttctttctaattagtcaaaattagtgaggtATGGTTGTTGCATCTCTTAACTACTGTACCACAGGGTCCGGTCATCACCTGCTTCTGTTTATGTTTGCTGTTCCCATAAGGAATCCTCCTAGGTACAAGTCTCATTAATAGGAGCTGGAACATTGCCT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20182480 363 - 85365473 ataggtgttcaaaaattgtTAAATGATTCTTACATTGTAGCTGTTACAGAGGTAAAATTCAATGGATAGAATAGAAACCATTTACAATGCCTTGAAAAACTC-AACCACGTCAGATTTAAA--AACTGATTTGTATAATCACAAAAAGGAAAAGTAGGACAATCACATTaaatattgtataatcagactttgcaaattcaatctgaatttctttctaattagtcaaacttagtgaggtATGGTTGTTGCATCTCTTAACTACTGTACCACAGGGTCGGGTCATCACCTGCTTCTATTTATGTTTGCTGTTCCCATAAGGAATCCTCCTAGGTACAAGTCCCATCAATAGGAGCTGGAACGTTGCCT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16647849 363 + 184069350 ataggtgttcaaaaattgtTAAATGACTCTTACATTGTATCTGTTACAGAGGTAAAATTCAATGGATAGAACAGAAGCCATTGACAATGCCTTGAAAAACTC-AACTATGTCAGATTTAAA--AACTGATTTGTATAATCACAAAAAGGAAAAGTAGGACAATCACATTACatattgtataatcagactttgcaaattcaatctgaatttctttctaattagtcaaaattagtgaggtATGGTTGTTGCATCTCTTAGCTACTGTACCACAGGGTCTGGTCATCACCTGCTTCTATTTATGTTTGCTGTTCCCGTAAGGAATCCTCTTAGGTACAAGTACCATCAATAGTAGCTGGAACATTGCCT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20690058 363 + 189454096 ataggtgttcaaaaattgtTAAATGACTCTTACATTGTATCTGTTACAGAGGTAAAATTCAATGGATAGAACAGAAGCCATTGACAATGCCTTGAAAAACTC-AACTATGTCAGATTTAAA--AACTGATTTGTATAATCACAAAAAGGAAAAGTAGGACAATCACATTACatattgtataatcagactttgcaaattcaatctgaatttctttctaattagtcaaaattagtgaggtATGGTTGTTGCATCTCTTAGCTACTGTACCACAGGGTCTGGTCATCACCTGCTTCTATTTATGTTTGCTGTTCCCGTAAGGAATCCTCTTAGGTACAAGTACCATCAATAGTAGCTGGAACATTGCCT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16283614 363 + 178775436 ataggtgttcaaaaattgttaaatgaCTCTTACATTGTATCTGTTACAGAGGTAAAATTCAATGGATAGAACAGAAGCCATTGACAATGCCTTGAAAAACTC-AACTATGTCAGATTTAAA--AACTGATTTGTATAATCACAAAAAGGAAAAGTAGGACAATCacattacatattgtataatcAGACTTTGCAAATTCAATCTGAATTTCTTTCTAATTAGTCAAAATTAGTGAGGTATGGTTGTTGCATCTCTTAGCTACTGTACCACAGGGTCCGGTCATCACCTGCTTCTATTTATGTTTGCTGTTCCCGTAAGGAATCCTCTTAGGTACAAGTACCATCAATAGTAGCTGGAACATTGcct i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19770911 363 - 48547382 ataggtgttcaaaaattgtTAAGTGACTCTTACAATGTATCTGTTACAGAGGTAAAATTCAATGGATAGAACAGAAGCCATTTACAATGCCTTGAAAAACTC-AACTATGTCAGATTTAAA--AACTGATTTGTATAATCACAATAAGGAAAAGTAGGACAATCACATTACatattgtataatcagactttgcaaattcaatctgaatttctttctaattagtcaaaattagtgaggtATGGTTGTTGCATCTCTTAGCTACTGTACCACAGGGTCCGGTCATCACCTGCTTCTATTTATGTTTGCTGTTCCCGTAAGGAATCCTCCTAGGTACAAGTACCATGAATAGGAGCTGGAACATTGCCT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21117837 355 - 190850796 ataggtgttcaaaaattgtTAAGTTACTCTTC-----TATCTGTTACAGAGGCAAATTTCAATGGATAGAATAGAAACTATTTACAATGCTTTGAAAAACTC-AACTATGTCGGATTTAAA--AACTAATTTGTATAATCACAAAGAAGAAAAGTAGAACAATCACATTaaatattgtataatcagactttgcaaattcaatctgaacttctctctaattagtcaaaatcaatgaggAATGGTTAT---ATCTCTTAACTACTGTACCACAGGGTCCGGTCATCACCTGCTTCTATTTATGTTTGCTGTTCCCGTAAGGAATCCTCCTACCTACAAGCCCCATCAATAGGAGCTGGAACATTGCCT i calJac3.chr3 C 0 C 0 s mm10.chr5 49111752 344 + 151834684 acacacacatacCACTCATTAAAATATTTCTATATAATATCAATTATAGGAACAAAATTTAATGG-----ACAAATGTCACTCATAGGTCCTTTCAAAATTCTAACCATGCCAGCTTTAAAAGAAAAAATGTATATAATCACAAAATACAAAAATAGAACAAACATGTTAAATATTATATAATCAGAGTTCTAAAATTCATTCTGCATTTTCTCTAGGATTATCTGAATCAGTGAGG------TGATGCATCTCATAACCACTACGTTCTTTGGAACAGTCACCACCTGC-----TTTATGTTTTAAGTTtcct------atcattctatgtatacatcatatcagtagttacttaaatgctgtct i mm10.chr5 I 448 I 285 s canFam3.chr3 3708006 350 - 91889043 GTAGGTGCTCA-AAATTATTGAATTGCTTCTGCGT--TATCAGTTTTAGAGGAACATTGTAA---ATAATACAGAAATCATTCATAATGCTTTGAAAATGTC-TACTGCCTAAGATTTTAA--AACCACATTGCACAGTCATCAAATGTAAAAGCAGGACATTCACATTAGGCATTATACAATCAGACTTCTCAAAGTCAATCTGCATTTCTCTCTAATTAGTTTAAATTAGAGAGG-ATA--CATTGCATCGTTTAACCCCTGTACCACAGGGTCCGGTCATTGCCTACTTCTATTTATGTTT-CTGTTCCCTACAGGTTTTGTCCTAGGAATTC-TCCCATCAAGAG--GCCAAGACATTGTCT i canFam3.chr3 C 0 C 0 a score=36086.000000 s hg38.chr4_KI270790v1_alt 6606 12 + 220246 AAATGAAAAATT s panTro4.chr4 21393008 12 + 193495092 AAATGAAAAATT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21569825 12 + 198332218 AAATGAAAAATT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20182843 12 - 85365473 AAATGAAAAATT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16648212 12 + 184069350 AAATGAAAAATT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20690421 12 + 189454096 AAATGAAAAATT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16283977 12 + 178775436 aaatgaacattt i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19771274 12 - 48547382 ACATGAAAAATT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21118192 12 - 190850796 AAATGAAAAACT i calJac3.chr3 C 0 C 0 s canFam3.chr3 3708356 12 - 91889043 AAGttaaaaaaa i canFam3.chr3 C 0 C 0 e mm10.chr5 49112096 285 + 151834684 I a score=1297605.000000 s hg38.chr4_KI270790v1_alt 6618 395 + 220246 -------TTATGTATTCCTTACTTCCTGAAGGAACTGCCACGGGGTCGGTCCTAATCAGCACTTCATTTTAATACAGTATCATCGAGTTCTAAGGATTAATTTTATAAACGATTAATGAAAGTACTTAATTGAATGTCACTCTCTGCTGCCTTCAGCTATTACAGGTTGTTGCTCTCACTGATTCCAGATCGATGCTTTTTTAAAC-----ACTCAGCTTTGCAGT-----------------------------------------------------------------------------------------------ACTTTAAACTACTTTGCAGTCTCTAAACTTCATTTAGAGACTCACCTGTGGCTCAAATAAAACAATCTGGGATTTGAgttattgttgttgttgtttttgGA--------ATGATTGTACAATGC---TTGACCAGCGACAGTTCATGTTGATTTCCTCCAACAGTTCA-TGTTTGCTTTCCTCCATAGAAACA s panTro4.chr4 21393020 382 + 193495092 -------TTATTTATTCCTTACTTCCTGAAGGAACTGCCACGGGGTCGGTCCTAATCAGCACTTCATTTTAATACAGTATCATCGAGTTCTAAGGATTAATTTTATAAACGATTAATGAAAGTACTTAATTGAATGTCACTCTCTGCTGCCTTCAGCTATTACAGGTTGTTGCTCTCACTGATTCCAGATCGATGCTTTTTTAAAC-----ACTCAGCTTTGCAGT-----------------------------------------------------------------------------------------------ACTTTAAACTAGGT-------------CTTCATTTAGAGACTCACCTGTGGCTCAAATAAAACAATCTGGGATTTGAGTTATTGTTGTTGTTGTTTTTGGA--------ATGATTGTACAATGC---TTGACCAGCGACAGTTCATGTTGATTTCCTCCAACAGTTCA-TGTTTGCTTTCCTCCATAGAAACA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21569837 382 + 198332218 -------TTATTTATTTCTTACTTCCTGAAGGAACTGCCACGGGGTCAGTCCTAATCAGCACTTCATTTTAATACATTATCATAGAGTTCTAAGGATTAATTTTATAAATGATTAATGAAAGTACTTAATTGAATGTCACTCTCTGCTGCCTCCAGCTATTACAGGTTGTTGCTCTCACTGATTCCAGATCGATGCTTTTTTAAAC-----ACTCAGCTTTGCAGT-----------------------------------------------------------------------------------------------ACTTTAAACTAGGT-------------CTTCATTTAGAGACTCACCTGTGGCTCAAATAAAACAATCTGGGTTTTGAGTTATTGTTGTTGTTGTTTTTGGG--------ATGATTGTACGATGC---TTGACCAGCGACAGTTCATGTTGATTTCCTCCAACAGTTCA-TGTTTGCTTTCCTCCATAGAAACA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20182855 382 - 85365473 -------TTATTTATTCCTTACTTCCTGAAGGAACTGCCACGGGGTCGGTCCAAATCAGCACTTCATTTTAATACATTATCATCGAGTTCTAAGGATTAATTTTATAAATGATTAATGAAAATACTTAATTGAATGTCACTCTCTGCTGCCTCCAGCTATTAAAGGCTGTTGCTCTCACTGATTCCAGATCGATGCTTTTTTAAAC-----ACTCAGCTTTGCAGT-----------------------------------------------------------------------------------------------ACTTTAAACTAGGT-------------CTTCATTTAGAGACTCACCTGTGGCTCAAATAAAACAATCTGGGTTTTGAgttattgttgttgttgtttttgGA--------ATGATTGTACAATGC---TTGACCAGCGACAGTTCATGTTGATTTCCTCCAACAGTTCA-TGTTTGCTTTCCTCCACAGAAACA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16648224 354 + 184069350 -------TTATTTATTCCTTACTTCCTGAAGGAACTGCCACGGGGTCAGTCCTAATCAGCACTTCATTTTAATACATTATCATCGAGTTCTAAGGATTAATTTTATAAATGATTAATGAAAGTACTT-----AATGTCACTCTCTGCTGCCTCCAGCTATTACAGGTTGTTGCTTTCACTGATTCCAGATCGATGCTTTTTTAAAC-----ACTCAGCTTTGCAGT-----------------------------------------------------------------------------------------------ATTTTAAACTAGGT-------------CTTCACTTAGAGACTCACCTGTGGCTCAAATAAAACAATCTGAGGTTTGAGTTATTGCTGCTGTTGTTTTTGGA--------ATGATTGTACAATGC---ATGACCAGCG-----------------------ACAATTCA-TGTTTGCTTTCCTCCATAGAAACA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20690433 359 + 189454096 -------TTATTTATTCCTTACTTCCTGAAGGAACTGCCACGGGGTCAGTCCTAATCAGCACTTCATTTTAATACATTATCATCGAGTTCTAAGGATTAATTTTATAAATGATTAATGAAAGTACTTAATTGAATGTCACTCTCTGCTGCCTCCAGCTATTACAGGTTGTTGCTTTCACTGATTCCAGATCGATGCTTTTTTAAAC-----ACTCAGCTTTGCAGT-----------------------------------------------------------------------------------------------ATTTTAAACTAGGT-------------CTTCACTTAGAGACTCACCTGTGGCTCAAATAAAACAATCTGAGGTTTGAGTTATTGCTGCTGTTGTTTTTGGA--------ATGATTGTACAATGC---GTGACCAGCG-----------------------ACAATTCA-TGTTTGCTTTCCTCCATAGAAACA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16283989 335 + 178775436 -------ttatttattccttactTCCTGAAGGAACTGCCACGGGGTCAGTCCTAATCAGCACTTCATTTTAATACATTATCATCGAGTTCTAaggattaattttataaatgattaaTGAAAGTACTTAATTGAATGTCACTCTCTGCTGCCTCCAGCTATTACAGGTTGTTGCTTTCACTGATTCCAGATCGATGCTTTTTTAAAC-----ACTCAGCTTTGCAGT-----------------------------------------------------------------------------------------------ATTTTAAACTAGGT-------------------------------------CTCAAATAAAACAATCTGAGGTTTGAGttattgctgctgttgtttttgga--------ATGATTGTACAATGC---GTGACCAGCG-----------------------ACAGTTCA-TGTTTGCTTTCctccatagaaaca i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19771286 359 - 48547382 -------TTATTTATTCCTTACTTCCTGAAGGAACTGCCACGGGGTCGGTCCTAATCAGCACTTCATTTTAATATATTATCATCGAGTTCTAAGGATTAATTTTATAAATGATTAATGAAAGTACTTAATTGAATGTCACTCTCTGCTGCCTCCAGCTATTACAGGTTGTTGCTCTCACTGATTCCAGATCGATGCTTTTTTAAAC-----ACTCAGCTTTGCAGT-----------------------------------------------------------------------------------------------ATTTTAAACTAGGT-------------CTTCACTTAGAGACTCACCTGTGGCTCAAATAAAACAATCTGAGGTTTGAGTTATTGCTGCTGTTGTTTTTGGA--------ATGATTGTACAATGC---GTGACCAGCG-----------------------ACAGTTCA-CGTTTGCTTTCCTCCATAGAAACA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21118204 355 - 190850796 -------TTATTTATTCCTTACTTCCTGAAGGAACTGCCATGGGGTCGGT-CTAATCAGCACTTCATTTTAATACATTATCATCGAGTTCTAAGGATTAATTTTATAAATGATTAATGAAAGTACTTAATTGAACGTCACTCTCTGCTGCCTCCAGCTATTACAGGTTGCTACTCTCACTGATTCTAGATCAATGTTTTTTTAAAC-----ACTCAGCTTTGCAGT-----------------------------------------------------------------------------------------------ACTTTAAACTAGGT-------------CTTCATTTAGAGACTCACCTGTATCTCAAATAAAACAATCTGGGTTTTGAGTTAT---TGTTGTTGTTTTTGGA--------ATGACTGCACAGTGC---TTGATCTGTG-----------------------ACAGTTCA-TGTTTGCTTTCCTCCAGAGAAACA i calJac3.chr3 C 0 C 0 s mm10.chr5 49112381 340 + 151834684 -------TTATGCATACTTTTATTCCTACAGAACTTGTCACAGGATCATCCCTAATCAGCACTTCATTTTAAAACATGATAATCAAGGTCTAAGGAGTAATTTTATGAATGACTAATGAAAGTACTTAATTGAATG--GCGCTCTGATGCCTCCAGTTATTACAGGTCATTGCTCTCACTGATTCAATACCAATGGCTCTTTAGATTGGAAAGTCAGCCTTACCCT-----------------------------------------------------------------------------------------------CCTGTAATACATGT-------------CTACACTTAGAAAATCATCTGTAACTCTACT-----------------------------CTGCTCTCTTGGGGAAGAAGGTATGATTTTGCAGTAG---TTGA-CAGAA-----------------------AGAGTACA-TATTTCTTTTCTTCTCTTGATATG i mm10.chr5 I 285 C 0 s canFam3.chr3 3708368 453 - 91889043 aaaaaaatta-aaaaaattaaCTTTCTGAAGAAACCGCCATGGGGTCAGCCCTAATCAGCACTTAATTTTAATACATTATCATCAAGTACT-AGGATTAATTTTGTAAATAACTAATGAAAGTATTTAATTGAATGGCACTCTCTGTTGTCCCTAGCTATTAAAGATCATCGCTTTCACTGATCCCAGATCAATGGTTCTTTGTATT----AGTCGATTCTGCATTTCTACATTTCATTAGCTTTTTTTCCTTTtctctctctttctcctctctctctctctctctctctctctctgtctctTTTTTTTCCCCCTTGCTTCGCTTTGATCCAAAT-------------CTTCCTTTTGAAACTCATCTTTGGCTC-AATGAAATAATCTG--------GTTTTCTTTGCT--TATTTTTTTA--------GCAATTATACAGCCCTTGTTGACTACTC-----------------------AAAATCCATTTTTTGGTTCCCTCCATAGGAACA i canFam3.chr3 C 0 C 0 a score=44221.000000 s hg38.chr4_KI270790v1_alt 7013 21 + 220246 GAAACTCAA--ccgggcatggtg s panTro4.chr4 21393402 21 + 193495092 GAAACTCAg--ccgggcatggtg i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21570219 21 + 198332218 GAAACTCgg--ccgggcatggtg i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20183237 21 - 85365473 GAAACTCgg--ccgggcatggtg i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16648578 22 + 184069350 GAAACTTGG-Cccaggcgtggtg i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20690792 22 + 189454096 GAAACTTGG-Cccaggcgtggtg i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16284324 21 + 178775436 gaaacttgg--ccaggcgtggtg i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19771645 21 - 48547382 GAAACTTgg--ccgggcgtggtg i chlSab2.chr27 C 0 C 0 s canFam3.chr3 3708821 23 - 91889043 AGAGCTCAATTTTGGGGATGCTG i canFam3.chr3 C 0 I 10 e mm10.chr5 49112721 0 + 151834684 C e calJac3.chr3 21118559 0 - 190850796 C a score=265028.000000 s hg38.chr4_KI270790v1_alt 7034 127 + 220246 gctcatgcctgtaatcccagcactttgggaggccgatgcgggtgtat------cacgaggtcaggagtttgagagcagcctggccaatgtggtgaaaccctgtctctaccaaaaa---tacaaaaattagctgggt s panTro4.chr4 21393423 127 + 193495092 gctcatgcctgtaatcccagcacttttggaggccgatgcaggtgtat------cacgaggtcaagagtttgagagcagcctggccaatgtggtgaaaccctgtctctactaaaaa---tacaaaaattagctgggc i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21570240 127 + 198332218 tctcatgcctgtaatcccagcactttgggaggccgatgcaggtgtat------cacgaggtgaggagtttgagagcagcctggccaatgtggtgaaaccccggctctactaaaaa---tacaaaaattagctgggc i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20183258 127 - 85365473 gctcatgcctgtaatcccagcactttgggaggccgatgcaggtgtat------cacgaggccaggagtttgagagcagcctggccaatgtggtgaaaccccgactctactaaaaa---tacaaaaattagctgggc i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16648600 107 + 184069350 gctcacgcctgtaatcccagcaccttggga--------------------------gaggtcaggagtttgagaccagcctggccaacgtggtgaaaccccatctcgtcaaaaaa---tacaaaaattatcccggt i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20690814 127 + 189454096 gctcacgcctgtaatcccagcaccttgggaggcccatgcgggtggat------cacgaggtcaggattttgagaccagcctggccaatgtggtgaaacctcgtctctaccaaaat---tacaaaaattagctgggc i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16284345 127 + 178775436 gctcacgcctgtaatcccagcactttgggaggccgatgcgggtggat------cacgaggtcaggattttgaaaccagcctggccaatgtggtgaaacctcgtctctaccaaaat---tacaaaaattagctgggc i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19771666 127 - 48547382 gctcacacctgtaatcccagcactttgggaggccgatgcaggtggat------cacgaggtcaggattttgagaccagcctggccagtgtggtgaaatcccgtctctaccaaaaa---tacaaaaattagctggtc i chlSab2.chr27 C 0 C 0 s mm10.chr5 49112721 115 + 151834684 -----AAAGTGTAATTTT-GTAGTTTGAGAAA-------AGATTTATTACCTCCATAAGCTCACAA----GACACCATCTTGACCAATATAATTAAAAGCCTGC----CtaaaaattttaataaaattaaaaGCGT i mm10.chr5 C 0 I 467 e calJac3.chr3 21118559 0 - 190850796 C e canFam3.chr3 3708844 10 - 91889043 I a score=270181.000000 s hg38.chr4_KI270790v1_alt 7161 133 + 220246 gtggtggcgggcgcctatagtcccagctactcaggaggttgagacaggacaatcacttaaacttgggaggtggaggttgcagtgagccaagaacgcgt--cactgaactccagcctgggcgacagagggagactc s panTro4.chr4 21393550 133 + 193495092 gtggtggcgggcgcctatagtcccagctactcaggaggttgagacaggacaatcgcttaaactcgggaggtggaggttgcagtgagccaagaacgcgt--cactgaactccagcctgggcgacagagggagactc i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21570367 133 + 198332218 gtggtggcgggtgcctgtagtcccagctactcaggaggttgagacagaagaatcgcttaaacctgggaggtggaggttgcagtgagccaagaacgcgt--cactgaactccagcctgggcgacagagggagactc i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20183385 133 - 85365473 gtgggggcgggcgcctgtagtcccagctactcaggaggttgagacaggagaatcgcttaaacccgggaggtggaggttacagtgagccaagaacgcgt--cactgaactccagcctgggcgacagagggagactc i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16648707 135 + 184069350 gtggtggcatgcgcttgtaatctcagctattcgggaggctaaggcaggagacttgcttaaacctgggaggtggaggttgcagtgagccgagaacgcgcgacactgcactccagtctgggcgacagagtaagactc i rheMac3.chr5 C 0 I 274 s macFas5.chr5 20690941 121 + 189454096 gtggtggcgggcgcctgtagt--------------aggttgaggcaggagacttgcttaaacctgggaggtggaggttgcagtgagccgagaacgcgcgacactgcactccagtctgggcgacagagtaagactc i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16284472 121 + 178775436 gtggtggcgggcgcctgtagt--------------aggttgaggcaggacacttgcttaaacctgggaggtggaggttgcagtgagccgagaacgcgcaacactgcactccagtctgggcgacagagtaagactc i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19771793 121 - 48547382 gtggtggcgggcgcctgtagt--------------aggttgaggcaggagacttgcttaaacctgggaggtggaggttgcagtgagctgagaatgcgggacactgcactccagtctgggcgacagagtaagactc i chlSab2.chr27 C 0 I 225 e mm10.chr5 49112836 467 + 151834684 I e calJac3.chr3 21118559 0 - 190850796 C e canFam3.chr3 3708844 10 - 91889043 I a score=1895.000000 s hg38.chr4_KI270790v1_alt 7294 9 + 220246 tgtctcata s panTro4.chr4 21393683 9 + 193495092 tgtctcaaa i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21570500 9 + 198332218 cgtctcaaa i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20183518 9 - 85365473 cgtctcaaa i nomLeu3.chr20 C 0 C 0 s macFas5.chr5 20691062 4 + 189454096 catc----- i macFas5.chr5 C 0 I 212 s papAnu2.chr5 16284593 4 + 178775436 cgtc----- i papAnu2.chr5 C 0 C 0 e mm10.chr5 49112836 467 + 151834684 I e chlSab2.chr27 19771914 225 - 48547382 I e rheMac3.chr5 16648842 274 + 184069350 I e calJac3.chr3 21118559 0 - 190850796 C e canFam3.chr3 3708844 10 - 91889043 I a score=5144.000000 s hg38.chr4_KI270790v1_alt 7303 5 + 220246 aaaaa s panTro4.chr4 21393692 5 + 193495092 agaaa i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21570509 5 + 198332218 aaaaa i ponAbe2.chr4 C 0 I 8 s nomLeu3.chr20 20183527 5 - 85365473 aaaaa i nomLeu3.chr20 C 0 C 0 s macFas5.chr5 20691278 5 + 189454096 agaaa i macFas5.chr5 I 212 C 0 s papAnu2.chr5 16284597 5 + 178775436 agaag i papAnu2.chr5 C 0 C 0 e mm10.chr5 49112836 467 + 151834684 I e chlSab2.chr27 19771914 225 - 48547382 I e rheMac3.chr5 16648842 274 + 184069350 I e calJac3.chr3 21118559 0 - 190850796 C e canFam3.chr3 3708844 10 - 91889043 I a score=2638.000000 s hg38.chr4_KI270790v1_alt 7308 7 + 220246 Caaagaa s panTro4.chr4 21393697 7 + 193495092 gaaagaa i panTro4.chr4 C 0 C 0 s macFas5.chr5 20691283 7 + 189454096 gaaagaa i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16284602 7 + 178775436 aaaggaa i papAnu2.chr5 C 0 C 0 e mm10.chr5 49112836 467 + 151834684 I e chlSab2.chr27 19771914 225 - 48547382 I e rheMac3.chr5 16648842 274 + 184069350 I e calJac3.chr3 21118559 0 - 190850796 C e canFam3.chr3 3708844 10 - 91889043 I e nomLeu3.chr20 20183532 0 - 85365473 C e ponAbe2.chr4 21570514 8 + 198332218 I a score=3895.000000 s hg38.chr4_KI270790v1_alt 7315 9 + 220246 agaaagaaa s panTro4.chr4 21393704 9 + 193495092 agaaagaaa i panTro4.chr4 C 0 I 2 s macFas5.chr5 20691290 9 + 189454096 aaagagaga i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16284609 9 + 178775436 cgaaggagc i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19772139 9 - 48547382 agaaggaag i chlSab2.chr27 I 225 C 0 e mm10.chr5 49112836 467 + 151834684 I e rheMac3.chr5 16648842 274 + 184069350 I e calJac3.chr3 21118559 0 - 190850796 C e canFam3.chr3 3708844 10 - 91889043 I e nomLeu3.chr20 20183532 0 - 85365473 C e ponAbe2.chr4 21570514 8 + 198332218 I a score=14666.000000 s hg38.chr4_KI270790v1_alt 7324 45 + 220246 gaaagaaag-aaagaaagaaag-aaagaaagaaagaaagaaagaaag s macFas5.chr5 20691299 47 + 189454096 gaaagaaagaaaagaaagaaagagaaagaaaaagagaaaaaagaaag i macFas5.chr5 C 0 I 11 s papAnu2.chr5 16284618 44 + 178775436 gaaggaagg--aaggaaggaag-gaaggaaggaaggaaggaaggaag i papAnu2.chr5 C 0 I 1 s chlSab2.chr27 19772148 45 - 48547382 gaaggaaag-agaaaaagaaag-aaagaaagaaagaaagaaagaaag i chlSab2.chr27 C 0 C 0 e mm10.chr5 49112836 467 + 151834684 I e rheMac3.chr5 16648842 274 + 184069350 I e calJac3.chr3 21118559 0 - 190850796 C e canFam3.chr3 3708844 10 - 91889043 I e nomLeu3.chr20 20183532 0 - 85365473 C e ponAbe2.chr4 21570514 8 + 198332218 I e panTro4.chr4 21393713 2 + 193495092 I a score=32736.000000 s hg38.chr4_KI270790v1_alt 7369 52 + 220246 aaagaaagaaagaaagaaagaaagaa-agaaagaaagaaag--aaaggaagaaag s rheMac3.chr5 16649116 52 + 184069350 aaagaaagaaagaaagaaagaaagaa-agaaagaaagaaag--aaagaaagaaag i rheMac3.chr5 I 274 C 0 s macFas5.chr5 20691357 55 + 189454096 aagaaaggaaagaaagaaagaaaaaagagaaagaaagaaagaaaaagaaagaaag i macFas5.chr5 I 11 C 0 s papAnu2.chr5 16284663 52 + 178775436 aaggaaggaaggaacgaaggaatgaa-ggaaggaaggaagg--aaggaaggaaag i papAnu2.chr5 I 1 M 445 s chlSab2.chr27 19772193 50 - 48547382 aaagaaagaaagaaagagagagag---agagagaaagaaag--aaagaaagaaag i chlSab2.chr27 C 0 C 0 e mm10.chr5 49112836 467 + 151834684 I e calJac3.chr3 21118559 0 - 190850796 C e canFam3.chr3 3708844 10 - 91889043 I e nomLeu3.chr20 20183532 0 - 85365473 C e ponAbe2.chr4 21570514 8 + 198332218 I e panTro4.chr4 21393713 2 + 193495092 I a score=23962.000000 s hg38.chr4_KI270790v1_alt 7421 51 + 220246 gaagaaaggaagaaaggaaggaaggaaggaaggaaggaaggaaggaaggaa s rheMac3.chr5 16649168 51 + 184069350 aaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaa i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20691412 51 + 189454096 aaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaa i macFas5.chr5 C 0 C 0 s chlSab2.chr27 19772243 51 - 48547382 aaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaagaa i chlSab2.chr27 C 0 I 20 e mm10.chr5 49112836 467 + 151834684 I e calJac3.chr3 21118559 0 - 190850796 C e canFam3.chr3 3708844 10 - 91889043 I e papAnu2.chr5 16284715 445 + 178775436 M e nomLeu3.chr20 20183532 0 - 85365473 C e ponAbe2.chr4 21570514 8 + 198332218 I e panTro4.chr4 21393713 2 + 193495092 I a score=3800.000000 s hg38.chr4_KI270790v1_alt 7472 17 + 220246 ggaaggaaggaaggaag s rheMac3.chr5 16649219 17 + 184069350 gaaagaaagaaagaaag i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20691463 17 + 189454096 gaaagaaagaaagaaag i macFas5.chr5 C 0 C 0 e mm10.chr5 49112836 467 + 151834684 I e chlSab2.chr27 19772294 20 - 48547382 I e calJac3.chr3 21118559 0 - 190850796 C e canFam3.chr3 3708844 10 - 91889043 I e papAnu2.chr5 16284715 445 + 178775436 M e nomLeu3.chr20 20183532 0 - 85365473 C e ponAbe2.chr4 21570514 8 + 198332218 I e panTro4.chr4 21393713 2 + 193495092 I a score=3138.000000 s hg38.chr4_KI270790v1_alt 7489 9 + 220246 gaaggaagg s nomLeu3.chr20 20183532 9 - 85365473 aaaaaaaaa i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16649236 9 + 184069350 aaagaaaga i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20691480 9 + 189454096 aaagaaaga i macFas5.chr5 C 0 C 0 e mm10.chr5 49112836 467 + 151834684 I e chlSab2.chr27 19772294 20 - 48547382 I e calJac3.chr3 21118559 0 - 190850796 C e canFam3.chr3 3708844 10 - 91889043 I e papAnu2.chr5 16284715 445 + 178775436 M e ponAbe2.chr4 21570514 8 + 198332218 I e panTro4.chr4 21393713 2 + 193495092 I a score=5202.000000 s hg38.chr4_KI270790v1_alt 7498 8 + 220246 aaggaagg s nomLeu3.chr20 20183541 8 - 85365473 aagaaaca i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16649245 8 + 184069350 aagaaaga i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20691489 8 + 189454096 aagaaaga i macFas5.chr5 C 0 C 0 s chlSab2.chr27 19772314 8 - 48547382 AAGAAAAA i chlSab2.chr27 I 20 C 0 e mm10.chr5 49112836 467 + 151834684 I e calJac3.chr3 21118559 0 - 190850796 C e canFam3.chr3 3708844 10 - 91889043 I e papAnu2.chr5 16284715 445 + 178775436 M e ponAbe2.chr4 21570514 8 + 198332218 I e panTro4.chr4 21393713 2 + 193495092 I a score=58718.000000 s hg38.chr4_KI270790v1_alt 7506 33 + 220246 GAAATTCAATTT-TGGGGGTTGTGGCAAACACTA s panTro4.chr4 21393715 33 + 193495092 GAAATTCAATTT-TGGGGGGTGTGGCAAACACTA i panTro4.chr4 I 2 C 0 s ponAbe2.chr4 21570522 33 + 198332218 gaaaCTCGATTT-TAGGGGATGTGGCAAACACTC i ponAbe2.chr4 I 8 C 0 s nomLeu3.chr20 20183549 34 - 85365473 gaaaCTCAATTTGGGGGGGGTGTGGCAAACGCTC i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16649253 33 + 184069350 CTCACTCAATTT-TGGGGGGCGTGGCAAACACTC i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20691497 33 + 189454096 CTCACTCAATTT-TGGGGGGCGTGGCAAACACTC i macFas5.chr5 C 0 C 0 s chlSab2.chr27 19772322 33 - 48547382 GAAACTCAATTT-TGGGGGGCGTAGCAAACACTC i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21118559 33 - 190850796 GAAGGTCAATTT-TGAGGAATGTGGTAAACACTC i calJac3.chr3 C 0 C 0 e mm10.chr5 49112836 467 + 151834684 I e canFam3.chr3 3708844 10 - 91889043 I e papAnu2.chr5 16284715 445 + 178775436 M a score=148991.000000 s hg38.chr4_KI270790v1_alt 7539 56 + 220246 CAGCTAAGCTGCAAGT----TCTTGC-ACCCTTACAAGTGGTCATGTGGCATGGCTTTCGG s panTro4.chr4 21393748 56 + 193495092 CAGCTAAGCTGCAAGT----TCTTGC-ACCCTTACAAGTGGTCATGTGGCATGGCTTTCGG i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21570555 56 + 198332218 CAGCTAAGCTGCAAGT----TCTTGC-TCCCTTACAAGTGGTCATGTGGCATGGCTTTCGG i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20183583 56 - 85365473 CAGCTAAGCTGCAAGT----TCTTGC-ACCCTTACAAGTGGTCACGTGGCATGGCTTTCGG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16649286 56 + 184069350 CAGCTAAGCTGCAAGT----TCTTGC-ACCCTTACAAGTGGTCATGTGGCATGGCTTTCGG i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20691530 56 + 189454096 CAGCTAAGCTGCAAGT----TCTTGC-ACCCTTACAAGTGGTCATGTGGCATGGCTTTCGG i macFas5.chr5 C 0 C 0 s chlSab2.chr27 19772355 56 - 48547382 CAGCTAAGCTGCAAGT----TCTTGC-ACCCTTACAAGTGGTCATGTGGCATGGCTTTCGG i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21118592 56 - 190850796 TCACTAGGCTACAAAT----TCTTGC-ACTCTTACAAGTGGTCATGTGGCACAGCTTTCAG i calJac3.chr3 C 0 C 0 s canFam3.chr3 3708854 60 - 91889043 CAGCTACACTACATGTTTGATCCAGCTGCCCCTGCAAGTGGCCACGTGACACTGCTCTGG- i canFam3.chr3 I 10 C 0 e mm10.chr5 49112836 467 + 151834684 I e papAnu2.chr5 16284715 445 + 178775436 M a score=28782.000000 s hg38.chr4_KI270790v1_alt 7595 7 + 220246 CCAATGA s panTro4.chr4 21393804 7 + 193495092 CCAATGA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21570611 7 + 198332218 CCAATGA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20183639 7 - 85365473 CCAATGA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16649342 7 + 184069350 CCAATGA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20691586 7 + 189454096 CCAATGA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16285160 7 + 178775436 CCAATGA i papAnu2.chr5 M 445 C 0 s chlSab2.chr27 19772411 7 - 48547382 CCAATGA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21118648 7 - 190850796 CCAATGA i calJac3.chr3 C 0 C 0 s canFam3.chr3 3708914 7 - 91889043 CCAGTGA i canFam3.chr3 C 0 C 0 e mm10.chr5 49112836 467 + 151834684 I a score=946245.000000 s hg38.chr4_KI270790v1_alt 7602 293 + 220246 -----AAAGCCTGCTTAGGATTTCTGCAAAAGTTTTGCTGTCCTTTTACAGGTTTTGCCCCTTCCTCCAT-ATTGCTTCTGTTCTTTCCTCCTGCCCAGAGCAT-GAAGG--AAGAT----ACAGTGCAGCAGCTATTTTTGAATTAGGAGAAT---GAAGACTAA----GGAG--------------------------ACTGGAATAGAATCA-------AGATTAATTCAGCAGttaccataataggcagcagca--------------------------------------tggatttggcccatagacattatttgctgacccctACTATAGACAAATGGATTAAGTTCAGCCCAGAATCAAG-AC-AGAATAGGAAGGG s panTro4.chr4 21393811 293 + 193495092 -----AAAGCCTGCTTAGGATTTCTGCAAAAGTTTTGCTGTCCTTTTACAGGTTTTGCCCCTTCCTCCAT-ATTGCTTCTGTTCTTTCCTCCTACACAGAGCAT-GAAGG--AAGAT----ACAGTGCAGCAGCTATTTTTGAATTAGGAGAAT---GAAGACTAA----GGAG--------------------------ACTGGAATCGAATCA-------AGATTAATTCAGCAGttaccataataggcagcagca--------------------------------------tggatttggcccatagacattatttgctgacccctACTATAGACAAATGGATTCAGTTCAGCCCAGAATCAAG-AC-AGAATAGGAACGG i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21570618 293 + 198332218 -----AAAGCCTGCTTAAGATTTCTGCAAAAGTTTTGCTGTCCTTTTACAGGTTTTGCCCCTTCCTCCAT-ATTGCTTCTGTTCTTTCCTCCTGCCCAGAGCTT-GAAGG--AAGAT----ACAGTGCAGCAGCTATTTTTGGATTAGGAGAAT---GAAGACTAA----GGAG--------------------------ACTGGAATCAAAGCA-------AGATTAATTCAGCAGttaccataataggcagcagca--------------------------------------tggatttggcccatagtcattatttgctgacccctACTATAGATAAATGGATTAAGTTCAGCCCAGAATCAAG-AC-AGAATAGGAAGGG i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20183646 293 - 85365473 -----AAAGCCTGCTTAGGATTTCTGCAAAAGTTTTGCTGTCCTTTTACAGGTTTTGCCCCTTCCTCCAT-ATTGCTTCTGTTCTTTCCTCCTGCCCAGAGCGT-GAAGG--AAAAT----ACAGTGCAGCAGCTATTTTTGGATTAGGAGAAT---GAAGACTAA----GGAG--------------------------ACTGGAATCGAATCA-------AGATTAATTCAGCAGttaccataataggcagcagca--------------------------------------tggatttggcccatagtcattatttgctgacccctACTATAGACAAATGGATTAAGTTCAGCCCAGAATCAAG-AC-AGAATAGGAAGGG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16649349 293 + 184069350 -----AAAGCCTGCCTAGAATTTCTGCAAAAGTTGTGCTGTCCTTTTACAGGTTTTGCTCCTTCCTCCAT-ATTGCTTCTGTTCATTCCTCCTGCCCAGAGCAT-GAAGG--AAGAT----ACAGAGCAGCAGCTCTTTTTGGATTAGAAGAAT---GAAGACTAA----GGAG--------------------------ACTGGAATCGAATAA-------AGATTAATTCAGCAGttaccataacaggtagcagca--------------------------------------tggatttggcccacagtcattgtttgctgacccctACTATAGACAAATGGATTAAGTTCAGCTCAGAATCAAG-AC-AGAATGGGAAGGG i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20691593 293 + 189454096 -----AAAGCCTGCCTAGAATTTCTGCAAAAGTTGTGCTGTCCTTTTACAGGTTTTGCTCCTTCCTCCAT-ATTGCTTCTGTTCTTTCCTCCTGCCCAGAGCAT-GAAGG--AAGAT----ACAGAGCAGCAGCTCTTTTTGGATTAGAAGAAT---GAAGACTAA----GGAG--------------------------ACTGGAATCGAATAA-------AGATTAATTCAGCAGttaccataacaggtagcagca--------------------------------------tggatttggcccacagtcattgtttgctgacccctACTATAGACAAATGGATTAAGTTCAGCTCAGAATCAAG-AC-AGAATGGGAAGGG i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16285167 293 + 178775436 -----AAAGCCTGCCTAGAATTTCTGCAAAAGTTGTGCTGTCCTTTTACAGGTTTTGCTGCTTCCTCCAT-ATTGCTTCTGTTCTTTCCTCCTGCCCAGAGCAT-AAAGG--AAGAT----ACAGAGCAGCAGCTCTTTTTGGATTAGAAGAAT---GAAGACTAA----GGAG--------------------------ACTGGAATCGAATAA-------AGATTAATTCAGCAGTTACCATAACAGGTAGCAGCA--------------------------------------TGGATTTGGCCCACAGTCATTGTTTGCTGACCCCTACTATAGACAAATGGATTAAGTTCAGCTCAGAATCAAG-AC-AGAATGGGGAGGG i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19772418 293 - 48547382 -----AAAGCCTGCCTAGGATTTCTGCAAAAGTTGTGCTGTCCTTTTACAGGTTTTGCCGCTTCCTCCAT-GTTGCTTCTGTTCTTTCCTCCTGCCCAGAGCAT-GAAGG--AAGAT----ACAGAGCAGCAGCTCTTTTTGGATTAGAAGAAT---GAACACTAA----AGAG--------------------------ACTGGAATCGAATAA-------AGATTAATTCAGCAGTTACCATAATAGGTAGCAGCA--------------------------------------TGGATTTGGCCCATAATCATTGTTTGCTGACCCCTACTATAGATAAATGGATCAAGTTCAGCTCAGAATCAAG-AC-AGAATGGGAAGGG i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21118655 298 - 190850796 -----AAAGCCTGTCTAGGCTTTCTGCAAAAGTTGTGCAGTCTTTTTCTAAGCTTTGTCATTTCCTCCAT-ATTGCTTCGGTTTGTTCCACCTGCCCAGAGCATGGAAGG--AAGATACTGACAGTGCAGCAGGTATTTTCAGATTAGGAGAAT---GAAGACTAA----GGAG--------------------------AATGAACCAGAATAA-------AGATTAATTCAGCAGTCACCATACTAGGAAGCAACA--------------------------------------TGGATTTGGCCCACAGTCATTGTTTGCTGACCCTTATTATGGGCAAATGGGTTAAGTTCAGTTCAGAATCAAG-AC-AAAATGGAAAGAG i calJac3.chr3 C 0 C 0 s mm10.chr5 49113303 372 + 151834684 -----AAAAATTACTCAAAACAAATCAAAGAGTTATTCTGTTCATTCGTAATTGTGGCCCCTT-TTCTGT-GTTTCTTTGGATACTTTCTCCTGCTGAAAACAT-AGAAG--AAGGTTGGTATATAGC--CACTTATTTGTTGAGGTTGAGATTTCAGCAGACCAACTTTGGTGCTCAGTCATTTATATGATGCACAATTATCGGAATCAGGCCCTGTCATTAGATTAGGTTCATAATCACTGTCATTGTTTGTGCCAATTGATTTTATAGAGTCATTTGATTTGGTACTTGTCATTGGATTTAGCATATACTTGTAGTGTGCTCACATCTACTGTAGACAAAT-GATTAGGTTTGGTTTCATGTCATTCAT-GAACTAGGATAAG i mm10.chr5 I 467 C 0 s canFam3.chr3 3708921 267 - 91889043 GAAGTACAACCTGTGTAGGA-ATCCGTAAAAGTGGTGCTGTCCCATCCTAGGCTTCGCCCCTTCCTCCATAATTGCTTTTGTTCCTCCCTCTTGCCTAGACCTT-GGAAACCAGGGT----ACAGTGCACCAGCTCTCTTGGGATGTGAAGATG---GAAACC-------GAAG--------------------------CCTGGGACAGAATGA-------AGACTGGGTCAG-----------------------A---------------------------------------------ACCCTCTAGTCTTTGTTTGCTGA-GCCTACTCTAGACAAACGAGTTAGGTTCAGGTCACAATCTAT-CCTGGAATGGCAAGAG i canFam3.chr3 C 0 I 606 a score=3128892.000000 s hg38.chr4_KI270790v1_alt 7895 897 + 220246 AAATGATAATACAAA-----------------------------------------CTGTGCAACTGCAGA---------------------------------------------AGAGGAGAAA-GGGTGCAAAATACATTA---------AGAACACCTGTGTCCACAGCTCACTCAGTGACGGAACATCAAGTACCAAGGATATGTACAAGTTCCAGACAGTGGTTAAAGCACACTTCCTCAGGTTAAGATAAGTTCAGGAAGTGGAAAAGTTCACACTACAGCTGAGATAATTCAGTTTTGAGATAACA-GGATGAGTTGGAGCTGAAACTAATGGAATGTGCCATAAAATTGTATAGAAATCAATCT---T---AGT-TTTTTTT---ATCTTC---TT--TTTCTTCAAAGAGGGTTTGTTATAATAAAATATTCTCAG--ACCTCCTTCTATCCTTGTTATAC-------TTTTTAA-GACACCCTGGATGGTAGTAAATCCTTGGATTCCATTTCAGGATA-TAAGCAGAAAGA-GATGGGAAGAGACCATGAAATCTCTCAAGAGAGAATGTCAAGAGAGGCATTATCAT---CATTATGGTCTCTCTTGCATGATCTCAGGTATTATGAGATAAAATACAAGTGTACTATTGCTTTGTGAATCTGAGGCTATCTGGCCTTTCTTAACATGAAATACATCATGGCATGTCTTGAAAACTTAAGCTTTGATCATGTTCAGTGAATAGAGAGGATTGAACGTTTGATCAATCTAATGAATTGAAA--CACAGTTCGCGAGGAACTCTGAAGACTTTTCATTCTGTCATCATTCCACTATGTGGTAaataatagctagcacatattg-atcacttattaggcatcaggcactttgtagtgcgctgtatacagtctacaattgagcgcatctaatcttccaaacagcagtataaggtgtcatgaccatgctaa-cttttcagaCAG--TCTTATA-GG---GAAAGGGCAAGTTTCTTAACCTCAATT---------- s panTro4.chr4 21394104 898 + 193495092 AAATGATAATACAAA-----------------------------------------CTGTGCAACTGCAGA---------------------------------------------AGACGAGAAA-GGGTGCAAAATACATTA---------AGAACACCTGTGTCCACAGCTCACTCAGTGACGGAACATCAAGTACCAAGGATATGTACAAGTTCCAGACAGTGGTTAAAGCACACTTCCTCAGGTTAAGATAAGTTCAGGAAGTGGAAAAGTTCACACTACAGCTGAGATCATTCAGTTTTGAGATAAGA-GGATGAGTTGGAGCTGAAACTAATGGAATGTGCCATAAAATTGTATAGAAATCAATCT---T---AGTGTTTTTTT---ATCTTC---TT--TTTCTTCAAAGAGGGTTTGTTATAATAAAATATTCTCAG--ACCTCCTTCTATCCTTGTTATAC-------TTTTTAA-GACACCCTGGATGGTAGTAAATCCTTGGATTCCATTTCAGGATA-TAAGCAGAAAGA-GATGGGAAGAGACCATGAAATCTCTCAAGAGAGAATGTCAAGAGAGGCATTCTCAT---CATTATGGTCTCTCTTGCATGATCTCAGGTATTATGAGATAAAATACAAGTGTACTATTGCTTTGTGAATCTGAGGCTATCTGGCCTTTCTTAACATGAAATACATCATGGCATGTCTTGAAAACTTAAGCTTTGATCATGTTCAGTGAATAGAGAGGATTGAACGTTTGATCAGTCTAATGAATTGAAA--CACAATTCGCGAGGAGCTCTGAAGACTTTTCATTCTGTCATCATTCCACTATGTGGTAaataatagctagcacatactg-atcacttattaggcatcaggcactttgtagtgcgctgtatacagtctacaattgagctcatctaatcttccaaacagcagtataaggtgtcatgaccatgctaa-cttttcagaCAG--TCTTATA-GG---GAAAGGGCAAGTTTCTTAACCTCAATT---------- i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21570911 899 + 198332218 AAATGATAATACAAA-----------------------------------------CTGTGCAACTGCAGA---------------------------------------------GGAGGAGAAA-GGGTACAAAATACATTA---------AGAACACCTGTGTCCACAGCTCACTCAGTGATGGAACATCAAGTACCAAGGATATGTACAAGTTCCAGACAGTGGTTAAAGCACACTTCCTCAGGCTAAGATAAGTTCAGGAAGTGGAAAAGTTCACCCTACAGCTGAGATAATTCAGTTTTGAGATAAGA-GGATGAGTTGGAGCTGAAACTAATGGAATGTGCTATAAAATTGTATAGAAATCAATCT---T---AG--TTTTTTT---ATCTTC---TT--TTTCTTCAAAGAGGGTTTGTTATCATAAAATATTCTCAG--ACCTCCTTCTATGCTTGTTATAC-------TTTTTAA-GACACCTTGGATGGTAGTAAATCCTTGGATTCCATTTAAGGATA-TAAGCAGAAAGA-GTTGGGAAGAGACCGTGAAATCTCTCAAAAGAGAATGTCAAGAGAGGCATTATCATCAACATTATGGTCTCTCTTGCATGATCTCAGATATTATGAGATAAAATACAAGTGTACTATTGCTTTGTGAATCTGAAGCTATCTGGCCTTTCTTAACATGGAATACATCATGGCATGTCTTGAAAACTTAAGCTTTGATCATGTTCAGTGAACAGAGAGGATTGAACGTTTGATCAATCTAATGAGTTGAAA--CACAATTCGCAAGGAACTCTGAAGACTTTTCATTCTGTCATCATTCCACTATGTGGTAaataatagctagcacatattg-atcacttattaggcatcaggcactttgtagtgctctgtatacagtctacagttgagctcatctaatcttccaaacagcagtataaggtgtcatgaccatgctaa-tttttcagaCAG--TCTTATA-GG---GAAAGGGCAAGTTTCTTAACCTCAATT---------- i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20183939 897 - 85365473 AAATGATAATAGAAA-----------------------------------------CTGTGCAACTGCAGA---------------------------------------------GGAGGAGAAA-GGGTGCAAAATACATTA---------AGAACACCTGTGTCCACAGCTCGCTCAGTGATGGAACATCAAGTACCAAGGATATGTACAAGTTCCAGACAGTGGTTAAAGCACACTTCCTCAGGTTAAGATAAGTTCAGGAAGTAGAAAAGTTCACACTACAGCTGAGATAATTCAGTTTTGAGATAAGA-GGATGAGTTGGAGCTGAAACTAATGGAATGTGCTATAAAATTGTATAGAAATCAATCT---T---AG--TTTTTTT---ATCTTC---TT--TTTCTTCAAAGAGGGTTTGTTATAATAAAATATTCTCAG--ACCTCCTTCTATGCTTGTTATAC------TTTTTTAA-GACAGCCTGGATGGTAGTAAATCCTTGGATTCCATTTCAGGATG-TAAGCAGAAAGA-GTTGGGAAGAGACCATGAAATCTCTCAAGAGAGAATGGCAAGAGAGGCATTATCAT---CATTATGGTCTCTCTTGCATGATCTCAGGTATTATGAGATAAAATACAAGTGTACTATTGCTTTGTGAATCTGAGGCTATCTGGCCTTTCTTAACATGAAATACATCATGGCATGTCTTGAAAACTTAAGCTTTGATCATGTTCAGTGAATAGAGAGGATTGAAGGTTTTATCAATCTAATGAGTTGAAA--CACAATTCGCAAGGAACTCTGAAGACTTTTCATTCTGTCATCATTCCACTATGTGGTAaataatagctatcacatattg-atcactaattaggcatcaggcactttgtagtgcactgtatacagtctacagttgagctcatctaatcttccaaacagcagtataaggtgtcatgaccatgctaa-tttttcagaCAG--TCTTACA-GG---GAAAGGGCAAGTTTCTTAACCTCAATT---------- i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16649642 902 + 184069350 AAATGATAATACAAA-----------------------------------------CTGTGTAACTGCAGA---------------------------------------------GGAGGAGAAA-GTGTACAGAATACGTTA---------AGATCACCGGTGTCCACAGCTCACTCGGTGATGGAATATCAAGTACCAAGGATATGTACAAGTTCCAGAGAGTGGTTGAAGCTCACTTCCTCACGTTAAGGTAAGTTCAGGAACTGGAAAGGTTCACACCACAGCTGAGATAATTCAGTTTTGAGGTAAGA-GGATGAGCTGGAGCTGAAACTAATGGAATGTGCTATAAAATTGTATAGAAATCAATCT---T---GG--TTTTTTTAAAATCTTC---TT--TTTCTTCAAAGAGGGTTTGTTGTAATAAAATATTCTCAG--ACCTCCTTCTATGCTTGTTACAC-------TTTTTAA-GACACCCTGGATGGTAGTAAATCCTTGGATTCCATTTCAGGATA-TAAGCAGAAAGA-GTTGGGAAGAGACCATGAAATCTCTCAAGAGAGAATGTCAAGAGAGGCATTATCGTCAACATTATGGTCTCTCTTGCATGATTTCAGGTGTTATGAGAAAAAATACAAGTGTACTATTGCTTTGTGAATGAGAGGCCATCTGGCCTTTCTTAATATTAAATACATCATGGCATGTCTTGAAAACTTAAGCTTTGATCATGTTCAGTGAATGGAGAGGACTGAACATTTGATCAATCTAATGAGCTGAAA--CACAATTCGCAAGGAACTCTGAAGACTTTTCACTCTGTCATCATTCCACTATGTGGTAaataatagctagcacatattg-atcacttattaggcatcaggcactttgcagtgcgctgtatacagtctacagttgagctcatctaatcttccaaactgcagtataaggtgtcatgaccatgctaa-tttttcagaCAG--TCTTATA-GG---GAAAGGGCAAGTTTCTTAACCTCAATT---------- i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20691886 902 + 189454096 AAATGATAATACAAA-----------------------------------------CTGTGTAACTGCAGA---------------------------------------------GGAGGAGAAA-GTGTACAGAATACGTTA---------AGATCACCGGTGTCCACAGCTCACTCGGTGATGGAATATCAAGTACCAAGGATATGTACAAGTTCCAGAGAGTGGTTGAAGCTCACTTCCTCACGTTAAGGTAAGTTCAGGAACTGGAAAGGTTCACACCACAGCTGAGATAATTCAGTTTTGAGGTAAGA-GGATGAGCTGGAGCTGAAACTAATGGAATGTGCTATAAAATTGTATAGAAATCAATCT---T---GG--TTTTTTTAAAATCTTC---TT--TTTCTTCAAAGAGGGTTTGTTGTAATAAAATATTCTCAG--ACCTCCTTCTATGCTTGTTACAC-------TTTTTAA-GACACCCTGGATGGTAGTAAATCCTTGGATTCCATTTCAGGATA-TAAGCAGAAAGA-GTTGGGAAGAGACCATGAAATCTCTCAAGAGAGAATGTCAAGAGAGGCATTATCGTCAACATTATGGTCTCTCTTGCATGATTTCAGGTGTTATGAGAAAAAATACAAGTGTACTATTGCTTTGTGAATGAGAGGCCATCTGGCCTTTCTTAATATTAAATACATCATGGCATGTCTTGAAAACTTAAGCTTTGATCATGTTCAGTGAATGGAGAGGACTGAACATTTGATCAATCTAATGAGCTGAAA--CACAATTCGCAAGGAACTCTGAAGACTTTTCACTCTGTCATCATTCCACTATGTGGTAaataatagctagcacatattg-atcacttattaggcatcaggcactttgtagtgcgctgtatacagtctacagttgagctcatctaatcttccaaactgcagtataaggtgtcgtgaccatgctaa-tttttcagaCAG--TCTTATA-GG---GAAAGGGCAAGTTTCTTAACCTCAATT---------- i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16285460 904 + 178775436 AAATGATAATACAAA-----------------------------------------CTGTGTAActgcaga---------------------------------------------gaaggagaaa-gggtaCAGAATACGTTA---------AGATCACCGGTGTCCACAGCTCACTCGGTGATGGAATATCAAGTACCAAGGATATGTACAAGTTCCAGAGAGTGGTTGAAGCTCACTTCCTCACGTTAAGGTAAGTTCAGGAACTGGAAACGTTCACACCACAGCTGAGATAATTCAGTTTTGAGATAAGA-GAATGAGCTGGAGCTCAAACTAATGGAATGTGCTATAAAATTGTATAGAAATCaatct---t---ag--ttttttttaaatcttc---tt--tttcttcaaagagGGTTTGttgtaataaaatattctcaGGTACCTCCTTCTATGCTTGTTACAC-------TTTTTAA-GACACTCTGGATGGTAGTAAATCCTTGGATTCCATTTCAGGATA-TAAGCAGAAAGA-GTTGGGAAGAGACCATGAAATCTCTCAAGAGAGAATGTCAAGAGAGGCATTATCATCAACGTTATGGTCTCTCTTGCATGATCTCAGGtgttatgagaaaaaatataagtGCACTATTGCTTTGTGAATGAGAGGCTATCTGGCCTTTCTTAATATTAAATACATCATGGCATCTCTTGAAAACTTAAGCTTTGATCATGTTCAGTGAATGGAGAGGACTGAACATTTGATCAATCTAATGAGCTGAAA--CACAATTCGCAAGGAACTCTGAAGACTTTTCACTCTGTCATCATTCCACTATGTGGTAAATAATAGCTAGCACATATTG-ATCACTTATTAGGCATCAGGCACTTTGTAGTGCGCTGTATACAGTCTACAGTTGAGCTCATCTAATCTTCCAAACTGCAGTATAAGGTGTCATGACCATGCTAA-TTTTTCAGACAG--TCTTATA-GG---GAaagggcaagtttcttaacctcaaTT---------- i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19772711 901 - 48547382 AAATGATAATACAAA-----------------------------------------CTGTGTAACTGCAGA---------------------------------------------GGAAGAGAAA-CGGTACCTAATACGTTA---------AGATCACCTGTGTCCACAGCTCACTCGGTGATGGAACATCAAGC-CCAAGGATATGTACAAGTTCCAGACAGTAGGTGAAGCTCACTTCCTCAGGTTAAGGTAAGTTCAGGAACTGGAAAAGTTCACACCACAGCTGAGATAATTCAGTTTTGAGATAAGA-GGATGAGCTGGAGCTGAAACTAATGGAATGTGCTATAAAATTGTATAGAAATCAATCT---T---AG--TTTTTTAAAAATCTTC---TT--TTTCTTCAAAGAGGGTTTGTTGTAATAAAATATTCTCAG--TCCTCCTTCTATGCTTGTTACAC-------CTTTTAA-GACACCCTGGATGGTAGTAAATCCTTGGATTCCATTTCAGGATA-TAAGCAGAAAGA-GTTGGGAAGAGACCATGAAATCTCTCAAGAGAGAATGTCAAGAGAGGCATTATCATCAACATTATGGTCTCTCTTGCATGATCTCAGGTGTTATGAGAAAAAATACAAGTGTGCTATTGCTTTGTGAATGAGAGGCTATCTGGCCTTTCTTAATATTAAATACATCATGGCATGTCTTGAAAACTTAAGCTTTGATCATGTTCAGTGAATGGAGAGCACTGAACATTTGATCAATCTAATGAGCTGAAA--CACAATTCGCAAGGAACTCTGAAGACTTTTCACTCTGTCATCATTCCACTATGTGGTAaataatagctagcacatattg-atcacttattaggcatcaggcactttgtagtgtgctgtatacagtctacagttgagctcatctaatctcccaaactgcagtataaggtgtcatgaccatgctaa-tttttcagaCAG--TCTTATA-GG---GAAAGGGCAAGTTTCTTATCCTCATTT---------- i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21118953 868 - 190850796 AAATGATAATACCAA-----------------------------------------CTGTGCAACTGCAGA---------------------------------------------TCAGGAGAAA-GGGTCCAAAATACATTA---------AGAACACCTGTGTTCACAGCTCACTTAGTGATGGAACATCAAGTAGCAAGCATAGGTACAAGTTGCAGATAGTGATGAAAGTACACTTTCTCAGGTTAAGAAAAGTTCGGTAACTGAAAAAGTCTACACCAAGGATGAGATAATTCAGTTTTGAGATAAAA-GGATGAGTCGGAGCTGAGACTAATGGAATGTGCTATAAAATGGAATAGAAATCAATCT---T---CG--TTTTTTC---ATCTTC---TT--TGTCTCCAAAGAGGGTTTGTTATGATAAAATATTCTCAG--ATCTCCTTCTACGTTTGTTACAC-------TTTTTAA-GACACCCGAGATACTAGTAAATCCTTGGATTCAATTTCAGGATA-TAAGCAGAATGA-GTTGGGAAGGTATCATGAAATCTCTCAAGAGAGACTGTCAAGAGAGGCATTATCATCAACGTTATGGTCTCTCTTGCATGATCTAAGGTGTTAGGAGACAAAATACAAGAGTTTTATTGCTTTGTGAATCTGAGGCTATCTGGCCTTTATTAACATTAAATACATCATGGCATGTCTTGAAAACTTAAGCTTTGATCATGTTC-----ATGGAGAGGATTGAACATTTGATCAATCTAATGAGTTGAAA--CTCA-------------------------CAGTTCTGTCATCATTCCACTATGTGataattaatagcta-cacacatta-agcacatatcaggcatcaggccctgtgtagtgcactgtatacagtctacagttgagctcatctaatcctccaaactgcagtagaaggtgtcattaccatgctaa-tttttcagaCAG--TCTTATA-AG---GAAAGGGCAAGTTTCTTAACCTCAATT---------- i calJac3.chr3 C 0 C 0 s mm10.chr5 49113675 905 + 151834684 AAACAATCACATGAAACCTTCTAGGGTCTCAAGACTAGCTCGGGGCTAGAGAGAATATTTGCATGTACAGAAACTTTGGTCCAATCATCAGAAAAAGCCCCAAGCTACGAACGTGGAGATGTGAAA-TAATGCAACATCTATTA---------AGAACCTTGATGTCATCATCTCATCTAATGACATGACA---------AAGTATAGTCAGAGA---AAGACAGTGCATAAAATGTATTTCCCTAGCATAAGTTTAGTTCAAGAGGTACAAAA-TCCAAACTAGAATTGAGAGAATGCAATTTCACGATGCTG-GGATGAGTC-AAACCAAGACTAAAGCAGAGTGCTATATAATTTTATGGGAATAAATCT---TTCAGG--TCATTTT---ATCTCCTCATT--TTCCCGCAAAGAGACTTTATTACGATGAAATATTCTCAG--ACCTTTCCTCAAGCTTGTTATATATATATATTTTTAGTGCTACCTTGGGTAGTAATAAATCCTTGTATTCCTTTGTGGGGTGCTAAGTGGAAATATGTTGAGAAGA-----------------------ATTGTCAAGAGAGATATTAACATCAACATTATAGGCTCTCATGCATGATCTTGGATATTATGGGATGAAATACAACAGTAATATTGCCTCGTGAATCTTAGGATG-CTGG--TTTCTGAATACTAAATGTATCATAGCTTGTTCTGAAAACTTAAACTCTGATC-TGCTCACTGAATAG--------------TAGATGGGCCTAATCAGCTGAAA--T---------------CCTTAACTTCTTTTCATTCATTTGCCATGCTGATATATAATAATTAATAGATATGACAAATTGAAGTTCTTGCTAAGAATCAG------------------------GTCCACAATT---TGCACTTAATCCTTCCAAGTGCAGGAAAAGGTGTCATGCTCATG------TTTTAGGTGAGCATCTTGTA-GGTGATAAAGGATAATTTTTTTAACCTCCATT---------- i mm10.chr5 C 0 I 257 s canFam3.chr3 3709794 884 - 91889043 AAAAAAAAAAAAAAA-----------------------------------------CTGTGCAAACACAGT---------------------------------------------GGAGGGGAAATGAGAGCAAAAGACATTAAAGCTTCCTAGAACCACAGCATTCACAGCTCACTCAGAGATGGGACAAGGAGCAGCAAGAATTTTTATAAGTTCAGGACAGGGGTTGAAGCATGCCTCCTCAGATT------AGTTCAG-AATGGGAAAAGTCTACA-GACAGCTGAGGGAACACTGTTTTGAGAAGAGAGGGGTAAGTGAAAGCCAAGACTAATGGAATGCACTCTGTGATTTTACAGGAATCAATCTCTCT---GT--TTTTTTC---ACCTCC---CTGCTTCTCTCAAAGAAGGTTTATTACAATGAAATATTCTCAG--GTCTCCTTCCAGGCTCATTACAC-------TTTTTAA-TGTCACCTGGTCAGTAATAAATCCTGAGATTGCTTTGGCGGATGCTAAGTAGAAAGC-GATGGGAAT-----------------------GACCATCAAGAGAGGCATTACCATCAACATCGTGGTCTCTGAGGCATGATCCCAGGTGTTAGGAGACACAAGTCAAGAGGGTTACTGCTTTGTGAATCTGAGAATATCTGGTCTTACTACACATTAAATGCCTCTTGACACGTCCTGGAAACATGCACTTTGATTGTGCTCAGTGAACAGAGATGACTGAGCTTTTCTTCAGTCTAATC-GTTGCAATTCACAATGCTCAGAAAATTCAGAAGTCTTCTCTTCTAGTTATCAATCCACCATGTAATAATTAACAGTCAGGACACCCCG-ATCACTGACTAGATATCTGGCACCATGTGA----------------TACACTTGAGCTCATTTATTCCTTGCAACTCCAACATGAGGTGTCATTACCACATTCATTTTTTCAAACAGAATCTTATGTGG---CAAAGGATAAGTTCCTTGACCTCTTTAAGACTTTGTT i canFam3.chr3 I 606 C 0 a score=90123.000000 s hg38.chr4_KI270790v1_alt 8792 25 + 220246 TGTATGAAGCACTAAGATATTTCAA s panTro4.chr4 21395002 25 + 193495092 TGTATGAAGCACTAAGATATTTCAA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21571810 25 + 198332218 TGTATGAAGCACTAAGATATTTCAA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20184836 25 - 85365473 TGTATGAAGCACTAAGATATTTCAA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16650544 25 + 184069350 TGTATGAATCACTAAGATATTTCAA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20692788 25 + 189454096 TGTATGAATCACTAAGATATTTCAA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16286364 25 + 178775436 TGTATGAATCACTAAGATATTTCAA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19773612 25 - 48547382 TGTATGAATCACTAAGATATTTCAA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21119821 25 - 190850796 TGTATGACGCACTAAGATACTTCAA i calJac3.chr3 C 0 C 0 s canFam3.chr3 3710678 25 - 91889043 TGGATGAGGCACTGATATATCTCAA i canFam3.chr3 C 0 C 0 e mm10.chr5 49114580 257 + 151834684 I a score=693576.000000 s hg38.chr4_KI270790v1_alt 8817 218 + 220246 TGAATATTCCGGATCAAATGTGTTTCTCCTTATAATTTT-TGGTGG-CAAAAAAAATCTGCTGTCAAATACATAATGTACTTTTGTT--------------------------------TCCTAGGTTATACAGCTCTAGCTACAGTCTTGAGCCCTACACAACCCTGAAA-CTGGGAGTAAACAA--------ATGTCACAAACATGACTGTATTATTCTTTAAAACATTTTATTTACAATTCAGTTT---------------------------------------------------GGTG----AGTAGTTG s panTro4.chr4 21395027 218 + 193495092 TGAATATTTTGGATCCAATGTGTTTCTCCTTATAATTTT-TGGTGG-CAAAAAAAATCTGCTGTCAAATACATAATGTACTTTTGTT--------------------------------TCCTAGGTTATACAGCTCTAGCTACAGTCTTGAGCCCTAAACAACCCTGAAA-CTGGGAGTAAACAA--------ATGTCACAAACATGACTGCATTATTCTTTAAAACATTTTATTTACAATTCAGTTT---------------------------------------------------GGTG----AGTAGTTG i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21571835 217 + 198332218 TGAATATTCTGGATCCAATGTGTTTCTCCTTATACTTTT-TGGTGG--AAAAAAAATCTGCTGTCAAATACATAATGTACTTTTGTT--------------------------------TCCTAGGTTATACAGCTCTAGCTACAGTCTTAAGCCCTACACAACCCTGAAA-TTGAGAGTAAACAA--------ATGTCACAAACATGACTGTATTATTCTTTAAGACATTTTATTTACAATTCAGTTT---------------------------------------------------GGTG----AGTAGTTG i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20184861 217 - 85365473 TGAATATCCTGGATCCAATGTGTTTCTCCTTATAATTTT-TGGTGG--AAAAAAAATTTGCTGTCAAATACACAATGTACTTTTGTT--------------------------------TCCTAGGTTATACAGCTCTAGCTACAGTCTTGAGCCCTACACAACCCTGAAA-TTGAGAGTAAACAA--------ATGTCACAAACATGACGGTATTATTCTTTAAAACATTTTGTTTACAATTCAGTTT---------------------------------------------------GGTG----AGTAGTTG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16650569 231 + 184069350 TGAATATTCCGAAGCCAATGTGCTTCTCCTTATAGTTTT-TGGTG----AAAAAAATCTGCTGTCAAATACAAAATGTACTTTTGTCTCCTAGTACTTTTGTC----------------TTCTAGGTTATACAGCTGTAACTACAGTCTTGAGCCCTACACAAACCTGAAA-TTGAGAGTAAATAA--------ATGTCCCAAACATGACTGTATTTTTCTTTAAAACATTTTATTTACAATTCAGTTT---------------------------------------------------GGTG----AGTAGTTG i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20692813 231 + 189454096 TGAATATTCCGAAGCCAATGTGCTTCTCCTTATAGTTTT-TGGTG----AAAAAAATCTGCTGTCAAATACAAAATGTACTTTTGTCTCCTAGTACTTTTGTC----------------TTCTAGGTTATACAGCTGTAGCTACAGTCTTGAGCCCTACACAAACCTGAAA-TTGAGAGTAAATAA--------ATGTCCCAAACATGACTGTATTTTTCTTTAAAACATTTTATTTACAATTCAGTTT---------------------------------------------------GGTG----AGTAGTTG i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16286389 232 + 178775436 TGAATATTCCGAAGCCAATGTGCTTCTCCTTATAGTTTT-Tggtg---aaaaaaaatctgctgtCAAATACAAAATGTACTTTTATCTCCTAGTACTTTTGTC----------------TTCTAGGTTATACAGCTGTAGCTACAGTCTTGAGCCCTACACAAACCTGAAA-TTGAGAGTAAATAA--------ATGTCCCAAACAtgactgtatttttctttaaaacattttatttacaattcAGTTT---------------------------------------------------GGTG----AGTACTtg i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19773637 249 - 48547382 TGAATATTCCGAAGCCAATGTGCTTCTCCTTATAGTTTT-TGGTGG--AAAAAAAATCTGCTGTCAAATACAAAATGTACTTTTGTCTCCTAGTACTTTTGTCTCCTAGTACTTTTGTATCCTAGGTTATACAACTGTAGCTACAGTCTTGAGTCCTACACAAACCTGAAA-TTGAGAGTAAATAA--------ATGTCACAAACATGACTGTATTATTCTTTCAAACATTTTATTTACAATTCAGTTT---------------------------------------------------GGTG----AGTAGTTG i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21119846 219 - 190850796 TGAATATTTGAGAGCCAATGTGTTTCACCTTATAATTTT-TGATGGAAAAAAAAAATCTGCTGTCAAATACATAATGTGCTTTTGTC--------------------------------TCCTAGGTTATACAGCTCTAGCTACAGTCTTGAGCCCTACACAAACCTGAAA-TAGAGAGTAAAGAA--------ATGTCACAAACATGACTGTATTATTCTTTAATACATTTTATTTACAATTCAATTT---------------------------------------------------GGTG----AGTAGTTG i calJac3.chr3 C 0 C 0 s mm10.chr5 49114837 183 + 151834684 TAAATATTCTTGAGCCAGTACGTTTCTTATTTTAATTTTGCGGTGG---AAAAAAATATGCTG-CAATCA------GTGGTTTTCTT---------------------------------------------------GACTAAAGATCTGTGACCTGAATGAAGATGAAG-TTGGTAGTAATCAATAAAAAATGTGCCACAAATAGTATTGGATTAGTTTT--AAGCATT---TATGCAATGCA------------------------------------------------------------------AACTA i mm10.chr5 I 257 C 0 s canFam3.chr3 3710703 274 - 91889043 ATAATATTTTGGTGCCAGTGCTTTTCTCACTGTAATTTT--GGTAGGAAAAATAAATCTGCTGGCAAATACATAGTGTACCTTGGGC--------------------------------ACTGAGGTCATGAAGTCCTACGTAGAGCTCTGAGTCCTACACAAACCTCAAAGTAAAAAATAAATAA--------ATGTCATAAATATGATTGTATTATCCTTTAAAATATTTTATTTACAACTCAGTTTTGGTTAGTGACCATTTTTTTTTTTTTAATTTCTACTCTTCAgggatgcctgggtggcttagtggttg i canFam3.chr3 C 0 I 152 a score=1143501.000000 s hg38.chr4_KI270790v1_alt 9035 342 + 220246 TCTTTAAAGTTTTTATTCTTTAAATATTTG-CTTTTCTTTCTATTTTATAATATATC------AATAC--TTAGGAAAATACAGTCTGAATAAATGT-GTATAACTTTTCAAAATAATTTTTAAGATACCAGC-AAAAA----------------TTTGGTAAA-AATTGGGC-AAATAATTGTTGATAT---AATATATTAATGCACAAGGAAGGCAACGCATAGACCATGAGAGCTCTCAGCTCTTTGTAAATGTCTTAAAAGCTACATAGGACTCATTGTTTAAGCTAATTCTATATCATTGGATAAGGAGTTATCAAAA-------------------GCTTCCAAG----------TACCACAATAAAATAAGTA-------tattaatttatttgtttattcat s panTro4.chr4 21395245 342 + 193495092 TCTTTAAAGTTTTTATTCTTTAAATATTTG-CTTTTCTTTCTATTTTATAATATATC------AATAC--TTAGGAAAATACAGTCTGAATAAATGT-GTATAACTTTTCAAAATAATTTTTAAGATACCAGC-AAAAA----------------TTTGGTAAA-AATTGGGC-AAATAATTGTTGATAT---AATATATTAATGCACAAGGAAGGCAACGCATAGACCATGAGAGCTCTCAGCTCTTTGTAAACGTTTTAAAAGCTACATAGGACTCATTGTTCAAGCTAATTCTATATCATTGGATAAGGAGTTATCAAAA-------------------GCTTCCAAG----------TACCACaataaaataagta-------tattaatttatttgtttattcat i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21572052 337 + 198332218 TCTTTAAAG------TTATTTAAATATTTG-CTTTTCTTTCTATTTTGTAATATATC------AATAC--TTAGTAAAATACAGTCTGAATGAATGT-GTATAATCTATCACAATAATTTTTAAGATACCAGCAAAAAA----------------TTGGGTAAA-AATTGGGC-AAATACTTGTTGATAT---AATATATTAATGCATAAGGGAGGCAATGCATAGAACATGAGAGCTCTCAGCTCTTTGTAAATGTCTTAAAAGCTACATAGGACTCATTGTTTAAGCTAATACTAGATCATTGGATAGGGAGTTATCAAAA-------------------GCTTCCAAG----------TACCACaataaaataagta-------tattaatttatttgtttattcat i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20185078 337 - 85365473 TCTTTAAAGTTTTTATTCTTTAAATATTTG-CTTTTCTTTCTATTTTGTAATATATC------AATAC--TTAGGAAAATACAGTCTGAATAAATGT-GTATAACTTATCACAATAATTTTTAAGATACCAGC-AAACA----------------TTTGGTCAA-AATTGGGC-AAATAATTGTTGATAT---AATACATTAATGCATAAGGGAAGCAATGCATAGACCATGAGAGATCTCAGCTCTTTGTAAATGTCTTAAAAGCTACATAGGACTCATTGTTTAAGCTAATTCTAGATCACTGGATAAGGAGTTATCAAAA-------------------GCTCCCAAG----------TACCACAATAAAATAAGTA-------TA-----TTATTTGTTTATTCAT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16650800 337 + 184069350 TCTTTAAAGTTTTTATTATTTAAATATTTG-CTTTTCTTTCTATTTTGTCATATATC------AATAC--TTAGGAAAGTACAGTCTAAATGAATGC-ATATAACTTATCACAATAATTTTTAAGATACCAGC-AAAAA----------------TTTGGTAAA-AATTGGGC-AAATAATTGTTGATAT--------ATTAATGCACAAGGGAGGCAGTACATAGACCATGAGAGCTCTCAGTTCTTTGTAAGTGTCTTAAAAGCTACATAGGACTCATTGTTTAAGCTAATTCTAGATCATTGGATAAGGAATTATCAAAA-------------------GCTTCCAAG----------TACCACAATAAAATAAGTA-------TACTAATTTATTTGTTTATTCAT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20693044 337 + 189454096 TCTTTAAAGTTTTTATTATTTAAATATTTG-CTTTTCTTTCTATTTTGTCATATATC------AATAC--TTAGGAAAGTAGAGTCTAAATGAATGC-ATATAACTTATCACAATAATTTTTAAGATACCAGC-AAAAA----------------TTTGGTAAA-AATTGGGC-AAATAATTGTTGATAT--------ATTAATGCACAAGGGAGGCAGTACATAGACCATGAGAGCTCTCAGTTCTTTGTAAATGTCTTAAAAGCTACATAGGACTCATTGTTTAAGCTAATTCTAGATCATTGGATAAGGAGTTATCAAAA-------------------GCTTCCAAG----------TACCACAATAAAATAAGTA-------TACTAATTTATTTGTTTATTCAT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16286621 337 + 178775436 tctttaaagtttttattatttaaatatttg-cttttctttctattttgtcaTATATC------AATAC--TTAGGAAAATACAGTCTAAATGAATGT-GTATAACTtattacaataatttttaagataccACC-AAAAA----------------TTTGGTAAA-AATTGGGC-AAATAATTGTTGATGT--------ATTAATGCATAAGGGAGGCAATACATAGACCATGAGAGCTCTCAGTTCTTTGTAAATGTCTTAAAAGCTACATAGGACTCATTGTTTAAGCTAATTCTAGATCATTGGATAAAGAGTTATCAAAA-------------------GCTTCCAAG----------taccacaataaaataagta-------tattaatttatttgtttattcat i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19773886 337 - 48547382 TCTTTAAAGTTTTTATTATTTAAATATTTG-CTTTTCTTTCTATTTTGTCATATATC------AATAC--TTAGGAGAGTACAGTCTAAATGAATGC-ATATAACTTATCACAATAATCTTTAACATACCAGA-AAAAA----------------TTTGGTAAA-AATTGGGC-AAATAATTGTTGATAT--------ATTAATGCACAAGGGAGGCAGTACATAGACCATGAGAGCTCTCAGTTCTTTGTAAATGTCTTAAAAGCTACATAGGACTCATTGTTTAAGCTAATTCTAGATCATTGGATAAGGAATTATCAAAA-------------------GCTTCCAAG----------TACCACAATAAAATAAGTA-------tattaatttatttgtttattcat i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21120065 343 - 190850796 TCTTTAAAGTTTTTATTCTTTAAATATTTG-CTTTCCTTTCTATTTTCTAATATATC------AATAC--TTAGGAAAGTATAGTCTGAGTGAATACAGTATAATTTATCACAATAATTTTTAATATATCAGC-AACAA---------------TTTTGGTAAA-AACTGGGC-AAATCATTGTTGATAT---AATATATTAATGGAT-AGGGAGGTAATACACAGACCATGAGATCACTCAGCTCTTTGTAAATGTTTTAAAGGCTACATAGGACTCATTGTTTAGGCTAATTCTGGATCATTAGATAAGAAGATATCAAAA-------------------GCTTCCAAG----------TACCACAATAAAATAAGTA-------GATTAATTTATTTGTTTATTCAT i calJac3.chr3 C 0 C 0 s mm10.chr5 49115020 375 + 151834684 TCTTTAACATCTTT-TCCCTTAAATATTAA-CATTTCTCTGTATATTATGATGCATCCGCCCTAAGCG--TTTGGTAGCTACAATCTGaatatataaaatataatttatCACATTGAATTTTAAGTAAGCAGC-AATCA----------------CTTGATTAATATTTTGGT-GACAGGCTGTTAACATTAGAGCAAATTAATACACAGAGGAAG-GATTCTCCGCTTTTGTGGCCACCCATCACTTTGGATTTGTATTAAAA-CTGAATCAAACTCAGTGAATAAACTAATTCTCTACTAGTGCATAAGGAA-TATCAAAATAGGAACCTTGACTCTAGGGCTATTAGC----------ACTCAAAATAAAGTGAGTAGAGTGTCTATTTATTCAACTTtttatttgt i mm10.chr5 C 0 I 253 s canFam3.chr3 3711129 368 - 91889043 ttttaaaaaaGTCTACTTTTCAAATACTTGTCTTATCTTTATATATTATGATGTATT------GATAGGATTAGGTAA-TAGGGTATGGATAAGTATAGCATAATGTATCACAATTATATTTAAAATATTAGC-AACAAAAATATTAGCAACAACTTTAGTGAT-AATTTTGCAAAATAATTATTGGTATTATAAGAAATTAATGCATAGGGGAGGGAGTACATGGGACACGAGATCTCTCAACTC--TGTAAATGTCTTAAAAGAGTCACAGGACTCA-TGTGTGTACTAGTTCTAGATCATTAAATAAAGGGTCATCAAAA-------------------GTCTCTAAGGTAATTAAAATGTCACAATAAAATGAGCA-------GATTCATTAATTTGTTTAT---- i canFam3.chr3 I 152 C 0 a score=1162138.000000 s hg38.chr4_KI270790v1_alt 9377 336 + 220246 tcagtaaatatttattgatAATTTTTAAGGATCAGACTAAACAAGATGG--ACCAAGTCCTGGCTTTCTCAGCACTTGCACATCAACAGACAGCTGTGTCCACAATCAGTAAGTTGAGGATGGCAGGACAGATCACCAGAGCATAAGCAAAGGTATGAGCTACACTCACAGCTAAGACACTGAACTATCTGCCCTGGGTCTAAGCAAAGGCCACAGGGTTGGTTTTCCAGAAGCTCCAAGATAGGTGCATGTATATCCAGATCCAATGTTCACAGCTTGGAACTGTAATCTTTAAAAGCTA--AGTTGAGGGCTCAAGTCAAAACATTTCTC----TCC------CAATA s panTro4.chr4 21395587 336 + 193495092 tcagtaaatatttattgataatttttaaGGATCAGACTAAACAAGATGG--ACCAAGTCCTGGCTTTCTCAGCACCTGCACATCAACAGACAGCTGTGTCCACAATCAGTAAGTTGAGGATGGCAGGACAGATCACCAGAGCATAAGCAAAGGTATGAGCTACACTCACAGCTAAGACACTGAACTATCTGCCCTGGGTCTAAGCAAAGGCCACAGGGTTGGTTTTCCAGAAGCTCCAAGATAGGTGCATGTATATCCAGATCCAATGTTCACAGCTTGGAACTGTAATCTTTAAAAGCTA--AGTTGAGGGCTCAAGTCAAAACATTTCTC----TCC------CAATA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21572389 336 + 198332218 tcagtaaatatttattgataatttttaaGGATCAGACTAAACAAGATGG--ACCAAGTCCTGGCTTTCTCAGCACTTGCACATCAACAGACAGCTGTGTCCACGATCAGTAAGTTGAGGATGGCAGGACAGATCACCAGAACATAAACAAAGGTATGAGCTATACTCACAGCTAAGACACTGAGCTATCTGCCCTGGGTCTAAGCAAAGGCCACAGGGGTGGTTTTCCAGAAGCTCCAAGGTAGGTGCATGTATATCCAGATCCAATGTTCACACCTTGGAACTGTAATCTTTAAAAGCTA--AGTTGAGGGCTCAAGTCAAAACATTTCTC----TCC------CAATA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20185415 336 - 85365473 TCAGTAAATATTTATTGATAATTTTTAAGGATCAGACTAAACAAGATGG--ACCAAGTCCTGGCTTTCTCAGCACTTGCACATCAACAGACAGCTGTGTCCATGATCAGTAAGTTGAGGATGGCAGGACAGATCACCAGAGCATAAGCAAAGGTATGAGCTACACTCACAACTAAGACACTGAACTATCTGCCCTGGGTCTAAGCAAAGGCAACAGGGGTGGTTTTCCAGAAGCTCCAAGATAGGTGCATGTATATCCAGGTCCAATGTTCACAGCTTGGAACTGTAATCTTTAAAAGCCA--AGTTGAGGGCTCAAGTCAAAACATTTCTC----TCC------CAATA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16651137 336 + 184069350 TCAGTAAATATTTATTGATACTTTTTAAGGATCAGACTAAACAAGATGG--AACAAGTCCTGGTTTTCTCAGCACTTGCACATCAACAGACAGCTATGTCCATGATCAGTAAGTTGAGGATGGCAGGACAGATCACCAGAGCATAAGCAAAGGTATGAGCTACACTCACAGCTAAGACACTGAGCTATCTGCCCTGGGTCTAAGCAAAGGCCACAGCGGTGGTTTTCCAGAAGCTCCAAGGTAGGTGCATGTATATCCAGAGCCAATGTTCACAGCTTGGAACTGTAATCTTTAAAAGCTA--AGTTGAGGGCTCCAGTCAAAACATTCCTC----TCC------CAATA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20693381 336 + 189454096 TCAGTAAATATTTACTGATACTTTTTAAGGATCAGACTAAACAAGATGG--AACAAGTCCTGGTTTTCTCAGCACTTGCACATCAACAGACAGCTATGTCCATGATCAGTAAGTTGAGGATGGCAGGACAGATCACCAGAGCATAAGCAAAGGTATGAGCTACACTCACAGCTAAGACACTGAGCTATCTGCCCTGTGTCTAAGCAAAGGCCACAGCGGTGGTTTTCCAGAAGCTCCAAGGTAGGTGCATGTATATCCAGAGCCAATGTTCACAGCTTGGAACTGTAATCTTTAAAAGCTA--AGTTGAGGGCTCCAGTCAAAACATTCCTC----TCC------CAATA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16286958 336 + 178775436 tcagtaaatatttattgatacttTTTAAGGATCAGACTAAACAAGATGG--AACAAGTCCTGGCTTTCTCAGCACTTGCACATCAACAGACAGCTGTGTCCATGATCAGTAAGTTGAGGATGGCAGGACAGATCACCAGAGCATAAGCAAAGGTATGAGCTACACTCACAGCTGAGACACTGAGCTATCTGCCCTGGGGCTAAGCAAAGGCCACAGCGGTGGTTTTCCAGAAGCTCCAAGGTAGGTGCATGTATATCCAGATCCAATGTTCACAGCTTGGAACTGTAATCTTTAAAAGCTA--AGTTGAGGGCTCCAGTCAAAACATTTCTC----TCC------CAATA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19774223 336 - 48547382 tcagtaaatatttattgatACTTTTTAAGGATCAGACTAAACAAGATGG--AACAAGTCCTGGCTTTCTCAGCACTTGCACATCAACAGACAGCTGTGTCCATGATCAGTAAGTTGAGGATGGCAGGACAGATCACCAGAGCATAAGCAAAGGTATGAGCTACACTCACAGCTAAGACACTGAGCTATCTGCCCTGGGTCTAAGCAAAGGTCACAGCGGTGGTTTTCCAGAAGCTCCAAGGTAGGTGCATGTATATCTAGAGCCAATGTTCACAGCTTGGAACTGTAATCTTTAAAAGTTA--AGTTGAGGGCTGCAGTCAAAACATTTCTC----TCC------CAATA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21120408 340 - 190850796 TCAGTAAATATCTATTGATAATTTTTAAGGATAAGACTAAGCAAGATAG--ACTAAGCTCTAGCTTTCTCAGCACTTGCATATCAAAAGACAACTGTGTCCATGATCAGGAAGTTGAAGATGGCAGGACAAGTCACCAGAGCATAGGCAAAGGTATGAGCTACATTCACAGCTAAGACACTGGACTATCTGCAGTGGGTCTAAGCAAAGACCACAGGAGTGGTTTTCCAGAGGCACCAAGGTAGGAGCATGTATATCCAGATCCGATGTTCACAGCTTGGAACTGTAATCTTTCAAAGCTA--AGTTAAGGGCTCAAGTCAAAACATTTCTCTCTGTCT------CAATA i calJac3.chr3 C 0 C 0 s canFam3.chr3 3711497 338 - 91889043 TCAATAAATGTTTATTGATAATTTTTAAGAACCGTTCTAAACAAGACAGACACCAAATCT--ATTTTCTTGGTACTTGGATATCAGCA-AGAGCTGTGTCAATGTCCGGCGAGTTGAAGACAACAGTACCGGTGACCAGAA-GTAAGCAAAGCCATGAGCTACACTTACAGAGAATAAACTGGGCCATTTCAGTGGGACGTATGCAAAGACTCTGGAGATAGTTTCCTGGAGGCTGCAGTGTAGGTGC----ACAGTCAGGTCCAAAGTTTACAGGTTGGGACTGAAACCTTTGAAATCTATGATTTCAGGGCTCATGTCAAAGCACCTCAC----TCTGAGCCACAATA i canFam3.chr3 C 0 C 0 e mm10.chr5 49115395 253 + 151834684 I a score=298065.000000 s hg38.chr4_KI270790v1_alt 9713 84 + 220246 AAAATCATGACTACTTGCAGAAGGAAAAGCCTGGCTATTTGGTTTTTAGGGAGTCAGGAGCACTAACCTGCTCTTTCAGCTTGC s panTro4.chr4 21395923 84 + 193495092 AAAATCATGACTACTTGCAGAAGGAAAAGCCTGGCTATTTGGTTTTGAGGGAGTCAGGAGCACTAACCTGCTCTTTCAGCTTGC i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21572725 84 + 198332218 AAAACCATGACTACTTGCAGAAGGAAAAGCCTGGCTATTTGCTTTTGAGGGAGTCAGGAGCACTAACCTGCTCTTTCAGCTTGC i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20185751 84 - 85365473 AAAACCATGACTACTTGCAGAAGGAAAAGCCTGGCTATTTGGTTTTGAGAGAGTCAGGAGCACTAACCTGCTCTTTCAGCTTGC i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16651473 84 + 184069350 AAAACCGTGACAACTGGTAGAAGGAAAAGCCTGGCTATTTGGTTTTGAGGGAGTCAGGAGCACTAACCTGCTCTTTCAGCTTGC i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20693717 84 + 189454096 AAAACCGTGACAACTGGTAGAAGGAAAAGCCTGGCTATTTGGTTTTGAGGGAGTCAGGAGCACTAACCTGCTCTTTCAGCTTGC i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16287294 84 + 178775436 AAAACTGTGACTACTTGTAGAAGGAAAAGCTTGGCTATTTGGTTTTGAGGGAGTCAGGAGCACTAACCTGCTCTTTCAGTTTGC i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19774559 84 - 48547382 AAAACCGTGATGACTTGTAGAAGGAAAAGCCTGGCTATTTGGTTTTGAGGGAGTCAGGAGCACTAACCTGCTCTTTCAGCTTGC i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21120748 84 - 190850796 AAAACCACAACCACCTGCAGAAAGAAAAGCCTGGCTATTTGGTTTTGAGGGAGTCTGGAGCATTAACCTGCTCTTTCAGCTTGC i calJac3.chr3 C 0 C 0 s mm10.chr5 49115648 83 + 151834684 AAAAGCAGAGGCATTTAAAGAAGG-AAAGATTGGTCATTCAGGTTCAAATGAGTCAGATGAGCTAACTTCCTCTTTCTCTTTGC i mm10.chr5 I 253 I 700 s canFam3.chr3 3711835 80 - 91889043 AGAACCCTGACCAAGAGCAGAAGAAGAGGGGTGGTCATATGGTTTTGACT--GTCTTTAGCCTTAACCCTCTCTCTGAGCTT-- i canFam3.chr3 C 0 C 0 a score=292281.000000 s hg38.chr4_KI270790v1_alt 9797 100 + 220246 AAGCTTGCAATTCTAGGCTTCCAAGTGAAAACCAACCTGCTTATCTTGCCTCATCTAGAATTAGAGGG--------------GTGACAGAGGAAA-TTGGGAAGTAGTTTTGAAA s panTro4.chr4 21396007 100 + 193495092 AAGCTTGCAATTCTAGGCTTCCAAGTGAAAACCAACCTGCTTATCTTGCCTCATCTAGAATTAGAGGG--------------GTGACAGAGGAAA-CTGGGAAGTAGTTTTGAAA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21572809 98 + 198332218 AAGCTTGCAATTCTAGGCTTCC-AGTGAAAACCAACCTGCTTATCTTGCCTCATCTAGAATTAGA-GG--------------GTGACAGAGGAAATTTGGGAAGTAG-TTTGAAA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20185835 100 - 85365473 AAGCTTGCAATTCTAGGCTTCCAAGTGAAAACCAACCTGCTTATCTTGCCTCATCTAGAATTAGAGGG--------------GTGACAGAGGAAA-TTGGGAAGTAGTTTTGAAA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16651557 92 + 184069350 A--------ATTCTAGGCTTCCAAGTGAAAACCAACCTGCTTATCTTGCCTCATCTAGAATTAGAGGG--------------GTGAGAAAGGAAA-TTGGGAAGTAGTTTTGAAA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20693801 90 + 189454096 A----------TGCTGGCTTCCAAGTGAAAACCAACCTGCTTATCTTGCCTCATCTAGAATTAGAGGG--------------GTGAGAAAGGAAA-TTGGGAAGTAGTTTTGAAA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16287378 92 + 178775436 A--------ATTCTAGGCTTCCAAGTGAAAACCGACCTGCTTATCTTGCCTCATCTAGAATTAGAGGG--------------GTGAGAAAGGAAA-TTGGGAAGTAGTTTTGAAA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19774643 92 - 48547382 A--------ATTCTAGGCTTCCAAGTGAAAACCAACCTGCTTATCTTGCCTTATCTAGAATTACAGGG--------------GTGAGAAAGGAAA-TTGGGAAGTAGTTTTGAAA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21120832 106 - 190850796 A--------ATTCTAGGCTTCCAAGTAAAAACCAAGCTGCATATCTTGCCTCATCTAGCATTAGAGGGTAAAGATAGACAGAATGAGAGAAGAAA-TTGGGCAGTAGTTTTGAAA i calJac3.chr3 C 0 C 0 s canFam3.chr3 3711915 92 - 91889043 ---CTT---ATCTGAGGCTTCCAAGTGAGCATTAACCTGCTTGTCTTGCCTCACCTTGAATTATAGAG----------------AAGAGGGGAAA-CTGGAAAGTGGTTTTGAAA i canFam3.chr3 C 0 I 791 e mm10.chr5 49115731 700 + 151834684 I a score=20499.000000 s hg38.chr4_KI270790v1_alt 9897 7 + 220246 GCTGCAG s panTro4.chr4 21396107 7 + 193495092 GCTGCAG i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21572907 7 + 198332218 GCTGCAG i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20185935 7 - 85365473 GCTGCAG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16651649 7 + 184069350 GCTACAG i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20693891 7 + 189454096 GCTGCAG i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16287470 7 + 178775436 GCTGCat i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19774735 7 - 48547382 GCTGCAT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21120938 7 - 190850796 GCTGCAG i calJac3.chr3 C 0 C 0 e mm10.chr5 49115731 700 + 151834684 I e canFam3.chr3 3712007 791 - 91889043 I a score=81665.000000 s hg38.chr4_KI270790v1_alt 9904 37 + 220246 TGccttccttcctttccttctttctctctctctcttt s panTro4.chr4 21396114 33 + 193495092 TGccttccttcctttccttctttctctctctct---- i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21572914 37 + 198332218 TGCCTTCTTTCCTTTCCTtctttctctctctctcttt i ponAbe2.chr4 C 0 I 323 s nomLeu3.chr20 20185942 37 - 85365473 TGccttccttcctttccttctttctctctctctctct i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16651656 37 + 184069350 TGccttccttcctttctctctttctctttctctctct i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20693898 37 + 189454096 TGCcttccttcctttctctctttctctttctctctct i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16287477 37 + 178775436 tgctttccttcctttctctctttctctttctctctct i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19774742 37 - 48547382 TGccttccttcctttctctctttctctttctctcgct i chlSab2.chr27 C 0 C 0 e mm10.chr5 49115731 700 + 151834684 I e calJac3.chr3 21120945 0 - 190850796 C e canFam3.chr3 3712007 791 - 91889043 I a score=28735.000000 s hg38.chr4_KI270790v1_alt 9941 39 + 220246 --------------tcttccttccttccttcctccctccctcccttcccctcc s panTro4.chr4 21396147 28 + 193495092 ----------------ttccttccttccttcnnnnnnnnnncct--------- i panTro4.chr4 C 0 C 0 s nomLeu3.chr20 20185979 28 - 85365473 ----------------ttccttcctccctccctccctcccttcc--------- i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16651693 48 + 184069350 ct-----ctccttcccttctttccttccttccttccttccttccttccttcct i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20693935 45 + 189454096 c--------cttccctttccttccttccttccttccttccttccttccttcct i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16287514 53 + 178775436 ctctctccttccctccttccctccttccttccttccccccttccttccttcct i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19774779 53 - 48547382 ctctctccttccctccttccctccttccttccttccttccttccttccttcct i chlSab2.chr27 C 0 C 0 e mm10.chr5 49115731 700 + 151834684 I e calJac3.chr3 21120945 0 - 190850796 C e canFam3.chr3 3712007 791 - 91889043 I e ponAbe2.chr4 21572951 323 + 198332218 I a score=36924.000000 s hg38.chr4_KI270790v1_alt 9980 37 + 220246 -ccctccctccctccctccct-------------ccc----------------------------ttccttccttc---------------ctt s panTro4.chr4 21396175 37 + 193495092 -ccctccccccctccctccct-------------ccc----------------------------ttccttccttc---------------ctt i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21573274 40 + 198332218 -ccctccctccctccctccct-------------tcc----------------------------ttcctTCGTTC------------Cttctt i ponAbe2.chr4 I 323 C 0 s nomLeu3.chr20 20186007 17 - 85365473 --------------------t-------------tcc----------------------------ttccttcctt----------------ctt i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16651741 66 + 184069350 tccttccttccttccttccttnnnnnnnnnnnnnnct----------------------------tttcttccttccctccctctttccttcct i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20693980 53 + 189454096 tccttccttccttccttcctt-------------tct----------------------------tttcttccttccctccctctttccttcct i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16287567 81 + 178775436 tccttccttccttccttcctt-------------ccttcattccttcctcccttccttccttttcttccttccttctctccctccttccttcct i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19774832 81 - 48547382 tccttccttccttccttcctt-------------ccttccttccttccttccttccttccttttcttccttccttctctccctccttccttcct i chlSab2.chr27 C 0 C 0 e mm10.chr5 49115731 700 + 151834684 I e calJac3.chr3 21120945 0 - 190850796 C e canFam3.chr3 3712007 791 - 91889043 I a score=1280927.000000 s hg38.chr4_KI270790v1_alt 10017 444 + 220246 tttctttctttctt------gacagtctctctctgttgcccaggctggagtgcagtggcacagtcacagctcactgcaacctccacctcctgggtttaaaca----------attctcctgcctcaacctcctgagtagc-tggtattacaggtgctggccaccatgcctggctaatttttgtattttttagtagagatggggttttgccatgttggccaggctggtctggaactcctgacctcaaatgacccaaccacctgggcctcccaaagtgctgggattacaggcgtgagccaccgcacccggccTAAAGCTGCAGTTTCTTTAACTTGTTATTTACTATAATGTCAGGAAAGGGCAAGAATCTTGAATCTGAAATAATAATGATGACAATGGGGTTGAAAAAAAGT-AAAAAGTTATTGCCTGGAGGTAAGAttatt-tttttt-aacctagtatttt s panTro4.chr4 21396212 445 + 193495092 tttctttctttctt------gacagtctctctctgttgcccaggctggagtgcagtggcacaatcacagctcactgcaacctccacttcctgggtgtaaaca----------attctcctgcctcaacctcctgagtagc-tggtattacaggtgctggccaccatgcctggctaatttttgtattttttagtagagatggggttttgccatgttggccaggctggtctggaactcctgacctcaaatgacccaaccacctgggcctcccaaagtgctgggattacaggcgtgagccaccgcacccggccTAAAGCTGCAGTTTCTTTAACTTGCTATTTACTATAATGTCAGGAAAGGGCAAGAATCTTGAATCTGAAATAATAATGATGACAATGGGGTTGAAAAAAAGT-AAAAAGATATTGCCTGGAGGTAAGATTATT-TTTTTTTAACCTAGtatttt i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21573314 446 + 198332218 tttctttctttctt------gacagtctctctctgttgcccaggctggagttcagtggcacaatcatagttcactgcaacctccatctcctgggtttaaaca----------attctcctgcctcaacctcctgagtagc-tggtattacaggtgctggccaccatgcctggctaatttttgtattttttagtagagatggggttttgccatgttggccaggctggtctggaactcttgacctcaaatgacccaaccacctgggcctcccaaagtgctgggattacaggcgtgagccactgcacccagccTAAAGCTGCAGTTTCTTTAACTTGTTATTTACTATAATGTCAGGACAGGGCAAGAATCTTGAATCTGAAATAATAATGATGACAATGGGGTTGAGAAAAAGT-AAAAAGTTATTGTCTGGGGGTAACATTATTATTTTGTTAACCTAGtatttt i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20186024 444 - 85365473 tttctttctttctt------gacagtctctttctgttgcccaggctggagtgcagtggcacaatcacagctcactgcaacctccacctcctgggtttaaaca----------attctcctgcctcagcctcctgagtagc-tggtattacaggtgctggccaccgtgcctggctaatttttgtattgtttagtagaaatggggtttcgccatgttggccaggctggtctggaattcctgacctcaaatgacccaaccacctgggcctcccaaagtgctgggattacaggcatgagccaccgcacccggccTAAAGCTGCAGTTTCTTTAAGTTGTGATTTACTACAATATCAAGAAAGGGCAAGAATCTTGAATCTGAAATAATAATGATGACAATGGGGTTGA-AAAAAGT-AAAAACTTATTGTCTGGAGGTAAGATTATT-ATTTTTTAACCTAGTATTTT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16651807 436 + 184069350 tttctttctttctt------AACagtctctctctgttgcccaggctggagtgcagtggcacaatcatggctcactgcgacctctacctcccaggtttaaacg----------attctcctgcctcaacctcctgagtagc-tgggattacaggtgctggccaccatgcctggctaatttttgtattttttagtagagatggggtttcaccatgttgaccaggctggtc---------tgacctcaaatgacccacccacctgggcctcccaaagcgctgggattacaggcgtgagtcaccgcacctggccTAAAGCTGCAGTTTCTTTAACTTGTTATTTATTATAATGTCAGGAAAGGGCAAGAATCTTGAATCTGAAGTAATAATGATGACAACGGGGTTGA-AAAAAGT-AAAAAGTTATTGTCTGGAGGTAAGATTATTATTTTTTTATCCTAGtatttt i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20694033 436 + 189454096 tttctttctttctt------AACagtctctctctgttgcccaggctggagtgcagtggcacaatcatggctcactgcgacctctacctcccaggtttaaacg----------attctcctgcctcaacctcctgagtagc-tgggattacaggtgctggccaccatgcctggctaatttttgtattttttagtagagatggggtttcaccatgttgaccaggctggtc---------tgacctcaaatgacccacccacctgggcctcccaaagcgctgggattacaggcgtgagtcaccgcacctggccTAAAGCTGCAGTTTCTTTAACTTGTTATTTATTATAATGTCAGGAAAGGGCAAGAATCTTGAATCTGAAGTAATAATGATGACAACGGGGTTGA-ACAAAGT-AAAAAGTTATTGTCTGGAGGTAAGattattatttttttatcctagtatttt i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16287648 437 + 178775436 tttctttctttctt------aacagtctctctctgttgcccaggctggagtgcagtggcacaatcatggctcactgcgacctctacctcccaggtttaaacg----------attctcctgcctcaacctcctgagtagc-tgagattacaggtgctggccaccatgcctggctaatttttgtattttttagtagagatggggtttcaccatgttgaccaggctggtc---------tgacctcaaatgacccatccacctgggcctcccaaagcgctgggattacaggcgtgagtcaccgcacctggcctaaagctGCAGTTTCTTTAACTTGTTATTTATTATAATGTCAGGAAAGGGCAAGAATCTTGAATCTGAAGTAATAATGCTGACAACGGggttga-aaaaagtaaaaaagttattgTCTAGAggtaagattattatttttttatcctagtatttt i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19774913 437 - 48547382 tttctttctttctt------gacagtctctctctgttacccaggctggagtgcagtggcacaatcatggctcactgtaacctctacctcctgggtttaaaca----------attctcctgcctcaacctcctgagtagc-tgagattacaggtgctggccaccatgcctggctaatttttatattttttagtagagatggggtttcgccatgttagccaggctggtc---------tgacctcaaatgacccacccacctgggcctcccaaagtgctgggattataggcgtgagtcaccacacctggccTAAAGCTGCAGGTTCTTTAACTTGTTATTTATTATAATGTCAGGAAAGGGCAAGAATCTTGAATCTGAAGTAATAATGCTGACAACGGGGTTGA-AAAAAGTAAAAAAGTTATTGTCTGGAGGTAAAAttattatttttttatcctagtatttt i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21120945 461 - 190850796 tttctttcctatttttctgggacaatctgtctctgttgctcaggctggagtgcagtgacatgatcacggctcactgcaacatccatctcctgggtttaggcaattctcttggattctcctgcctcaaactactgagtagcttgggattacaggtgccggctaccatgcctgggtaatttttgtatt-tttagtagagacagggtttctccatgttggccaggcttgtttgaaactcctgacctcaaatgacccacctaccttggcctcccaaagtgctgggattacaggtgtgagtcactgcatccagccTAAAGCTGCAGTTTCTTTAACTTGTTATTTCCTATAATGTCAGGAAAGGGCAAGGATCTTGAATCTGAAATAATAATGATGGCAATGGGGTTTAAGAAAAGT-AAAAAGTTACTGCCTGGAGGTGAGATTATT-ATTTTTTATCATACTGTTTT i calJac3.chr3 C 0 C 0 e mm10.chr5 49115731 700 + 151834684 I e canFam3.chr3 3712007 791 - 91889043 I a score=198875.000000 s hg38.chr4_KI270790v1_alt 10461 59 + 220246 aaatatattattttattctactttaGGTGTTAAATACATGAAGTAGTTAATTGTCAGCA s panTro4.chr4 21396657 59 + 193495092 aaatatattattttattCTACTTTAGGTGTTAAATACATGAAGTAGTTAATTGTCAGCA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21573760 59 + 198332218 aaatatattattttattCTACTTTAGGTGTTAAATATATGAAGTAGTTAATTGTCAGCA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20186468 59 - 85365473 AAATATATTATTTTATTCTACTTTAGGTGTTAAATACACGTAGTAGTTAATTGTCAGCA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16652243 59 + 184069350 aaatatattattttattctattttaGGTGTTAAATACATGAAGTAGTTAATTGTCAGCA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20694469 59 + 189454096 aaatatattattttattctattttaGGTGTTAAATACATGAAGTAGTTAATTGTCAGCA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16288085 59 + 178775436 aaatatattattttattctattttaggtGTTAAATACATGAAGTAGTTAATTGTCAGCA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19775350 59 - 48547382 aaatatattattttattctattttaGGTGTTAAATACATGAAGTAGTTAATTGTCGGCA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21121406 55 - 190850796 AAATATTTTATTCTATT----TTTAGATGTTAAATTCATGAAGTAGTTAATTGTCAGCA i calJac3.chr3 C 0 C 0 s canFam3.chr3 3712798 58 - 91889043 aaataaaatattttattatatttttGGTG-GGTATGCATTAAGAAGTTAATGGTGAGCA i canFam3.chr3 I 791 C 0 e mm10.chr5 49115731 700 + 151834684 I a score=751017.000000 s hg38.chr4_KI270790v1_alt 10520 210 + 220246 ATAATATAATGTA-AAGTCAA--------AGTACAAGAAAGT---CTTATGCTTTCAAGCCTTGATGTAAAAAATAATTATATGAAGTAAGTTAGGAATGAGGTGGGTAGGAAATTGAGGGTGCCTTGCTATTTTCAGCAACTGTCAGAGTGTTCGGTGCATGATACATATTTTCTGAATATTTTCAGAAAATCATTTCTGATGTGTCAGTATACTTTGAGT s panTro4.chr4 21396716 210 + 193495092 ATAATATAATGTA-AAGTCAA--------AGTACAAGAAAGT---CTTATGCTTTCAAGCCTTGATGTAAAAAATAATTATATGAGGTAAGTTAGGAATGAGGTGGGTAGGAAATTGAGGGTGCCTTGCTATTTTCAGCAACTGTCAGAGTGTTCGGTGCATGATACATATTTTCTGAATATTTTCAGAAAATCATTTCTGATGTGTCAGTATACTTTGAGT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21573819 211 + 198332218 ATAATATAATGTACAAGTCAA--------AGTACAAGAAAGT---CTTATGCTTTCAAGCCTTGATGTAGAAAATAATTATATGAGGTAAGTTAAGAATGAGGTGGGTAGGAAATTGAGGGTGCCTTGCTATTTTCAGCAACTGTCAGAGTGTTTGGTGCATGATACATATTTTCTGAATATTTTCAGAAAATCATTTCTGATGTGTCAGTATACTTTGAGT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20186527 209 - 85365473 ATAATATAATATACAAGTCAA--------AGTACAAGAAAGT---CTTATGCTTTCAAGCCTTGATGTAGAAAACAATTCTATGAGGTAAGTTAGGAATGAGGTGGGTAGGAAATTGAGGGTGCCTTGCT-TTTTCAGC-ACTGTCAGAGTGTTTGGTGCATGATACATATTTTCTGAATATTTTCAGAAAATCATTTCTGACGTGTCAGTATACTTTGAGT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16652302 211 + 184069350 ATAATATAATGTATAAGTCAA--------ACTACAAGAAAAT---CTTATGCTTTCAAGCCTTGATGTAGAAAATAATTATATGAGGTAAGTTAGGAATGAGGTGGGTAGGAAATTGAGGGTGTCTTGCTATTTTTAGCAACTCTCAGAGTGTTTGGTACATGATACATATTTTCTGAATATTTTCAGAAAATCATTTCTAATGTGTTGGTATACTTTGAGT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20694528 211 + 189454096 ACAATATAATGTATAAGTCAA--------ACTACAAGAAAAT---CTTATGCTTTCAAGCCTTGATGTAGAAAATAATTATATGAGGTAAGTTAGGAATGAGGTGGGTAGGAAATTGAGGGTGTCTTGCTATTTTTAGCAACTCTCAGAGTGTTTGGTACATGATACATATTTTCTGAATATTTTCAGAAAATCATTTCTAATGTGTTGGTATACTTTGAGT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16288144 211 + 178775436 ATAATACAATGTACAAGTCAA--------AGTACAAGAAAAT---CTTATGCTTTCAAGCCTTGatgtagaaaataattatatgaggTAAGTTAGGAATGAGGTGGGTAGGAAATTGAGGGTGTCTTGCTATTTTCAGCAACTCTCAGAGTGTTTGGTACATGAtacatattttctgaatattttcagaaaatcatTTCTAATGTGTCGGTATACTTTGAGT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19775409 211 - 48547382 ATAATATAATGTACAAGTCAA--------AGTACAAGAAAAT---CTTATGCTTTCAAGCCTTGATGTAGAAAATAATTATATGAGGTAAGTTAGGAATGAGGTGGGTAGGAAATTGAGGGTGCCTTGCTATTTTCAGCAACTCTCAGAGTGTTTGGTACATGATACATATTTTCTGAATATTTTCAGAAAATCATTTCTAATGTTTTGGTATACTTTGAGT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21121461 197 - 190850796 ATAATATAATGTACTAGTCAC--------AGTACAAGAAAGT---CTTATTCTTTCAAGCCTTGATATAGAAAATGATTATATGAGGTAAGTTAGAAATGAGGTAT---GGAATTTGAGGGTACCTTGCTATTCTCAGCAGCTCTCAGAGTGTTTGGTACGTGATACATATTTTCC-----------GAAAATCATTTCTAATGTGTCGGTATACTTTGAGT i calJac3.chr3 C 0 C 0 s mm10.chr5 49116431 201 + 151834684 ataaaatgaaata-aaTCTAAAAACATTTAATAAAAAAAAATACCTTTATACTT-------TTGATATGGAAAACGATTCTATGAGAACAATGAAGAATGATATGGGTAAGAGATTGAATGCAAGATGACATTTTCATCAATTAATGCACTGT----TATATAAAATATATATTCTGAATATTCTCTAAATGTTATTTCTAATATGCTGGTAC--------- i mm10.chr5 I 700 C 0 s canFam3.chr3 3712856 202 - 91889043 ATAATACTACATACCAGCCAA--------AGGAGAATAAATT---CCTATTCTTTCAAACCTTGATGTGGCAGATGATTATAGAAGGTGCGTT---AATGATATGGGTAGGAAATTGAGGGTGGATTGCCATTTTCAGCCACC------ATATTTAGTGCATGGTAAATGTTTTCTGAATATTTTCAGAAATGTATTTCTAATGTGCTGTTACACATTGAGT i canFam3.chr3 C 0 I 222 a score=94031.000000 s hg38.chr4_KI270790v1_alt 10730 29 + 220246 CTTGGAACACTTAACTGCAAAACGAAGTC s panTro4.chr4 21396926 29 + 193495092 CTTGGAACACTTAACTGTAAAACGAAGTC i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21574030 29 + 198332218 CTTGGCACACTTAACTGCAAAACGAAGTC i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20186736 29 - 85365473 CTTGGCACACTTAACTGCAAAACGAAGTT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16652513 29 + 184069350 CTTGGCACACTTAACTGCAAAACAAAGTT i rheMac3.chr5 C 0 I 96 s macFas5.chr5 20694739 29 + 189454096 CTTGGCACACTTAACTGCAAAACAAAGTT i macFas5.chr5 C 0 I 30 s papAnu2.chr5 16288355 29 + 178775436 CTTGGCACACTTAACTGCAAAACAAAGTT i papAnu2.chr5 C 0 I 30 s chlSab2.chr27 19775620 29 - 48547382 CTTGGCACACTTAACTGCAAAACGAAGTT i chlSab2.chr27 C 0 I 91 s calJac3.chr3 21121658 29 - 190850796 CGTGGCACAGTTAACTGCAAAACAAAGTC i calJac3.chr3 C 0 C 0 s mm10.chr5 49116632 11 + 151834684 -----------------CAGAAAAAATT- i mm10.chr5 C 0 C 0 s canFam3.chr3 3713280 29 - 91889043 CTTGGCACATTCAACTGTGATAAGAAATC i canFam3.chr3 I 222 C 0 a score=7826.000000 s hg38.chr4_KI270790v1_alt 10759 11 + 220246 GCTG--------------------------------TGATAGA s panTro4.chr4 21396955 11 + 193495092 GCTG--------------------------------TGATAGA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21574059 11 + 198332218 GCTG--------------------------------TGATAGA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20186765 11 - 85365473 GCTG--------------------------------TGATAGA i nomLeu3.chr20 C 0 C 0 s macFas5.chr5 20694798 43 + 189454096 gctggccaccatgcctggctaatttttgtatttttttagtaga i macFas5.chr5 I 30 I 23 s papAnu2.chr5 16288414 43 + 178775436 gctggccaccatgcctggctaatttttgtatttttttagtaga i papAnu2.chr5 I 30 I 23 s chlSab2.chr27 19775740 11 - 48547382 gCTG--------------------------------TGATAGA i chlSab2.chr27 I 91 C 0 s calJac3.chr3 21121687 11 - 190850796 ACTC--------------------------------TCATAAA i calJac3.chr3 C 0 C 0 s mm10.chr5 49116643 11 + 151834684 GGTA--------------------------------TGATAAG i mm10.chr5 C 0 C 0 s canFam3.chr3 3713309 11 - 91889043 ACTA--------------------------------TGATACT i canFam3.chr3 C 0 C 0 e rheMac3.chr5 16652542 96 + 184069350 I a score=250674.000000 s hg38.chr4_KI270790v1_alt 10770 81 + 220246 GAAAAAGGA------ATATGTATATATAAATGCAGAGATATAATGAGATAGATGCACATTTACAT--------TTTGAAAATCAGGTTTTCTTCA s panTro4.chr4 21396966 81 + 193495092 GAAAAAGGA------ATATGTATATATAAATGCAGAGATATAATGAGATAGATGCACATTTACAT--------TTTGAAAATCAGGTTTTCTTCA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21574070 81 + 198332218 GAAAAAGGA------ATATGTATATATAAATGCAGAGATATAATGAGATAGATGCACATTTACAT--------TTTAAAAATCAGGTATTCTTCA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20186776 87 - 85365473 GAAAAAGGAatatatatatatatatatatatgcagagatataatgagatagatgtacatttacat--------TTTAAAAATCAGGTTTTCTTCA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16652638 81 + 184069350 GATAAAGGA------ATATGTATATATAAATGCAGAGATATAATGAGACAGATGCACATTTACAT--------TTTAAAAATTAGGTTTTCTTCG i rheMac3.chr5 I 96 C 0 s macFas5.chr5 20694864 81 + 189454096 GATAAAGGA------ATATGTATATATAAATGCAGAGATATAATGAGACAGATGCACATTTACAT--------TTTAAAAATTAGGTTTTCTTCG i macFas5.chr5 I 23 C 0 s papAnu2.chr5 16288480 81 + 178775436 GATAaagga------atatgtatatataaatgcagAGATATAATGAGACAGAtgcacatttacat--------tttaaaaattaggttttcTTTG i papAnu2.chr5 I 23 C 0 s chlSab2.chr27 19775751 80 - 48547382 -GAAAAGGA------ATATGTATATATAAATGCAGAGATATACTGAGACAGATGCACATTTACAT--------TTTAAAAATTAGGTTTTCTTTG i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21121698 78 - 190850796 GAAAAAGGA------ATATGTATATATAAATGTAGAGACATAATGAGAC---TACACATTCACAT--------TTTAAAAATCAGGTTTTCTTCA i calJac3.chr3 C 0 C 0 s mm10.chr5 49116654 66 + 151834684 ----GAAAA------ACACGAATTCAT---------GAGATAAACAGATAAATAAACAGTAAAA----------AAGAAAAGCAGCTTTTCTCCA i mm10.chr5 C 0 I 1736 s canFam3.chr3 3713320 87 - 91889043 GAAATAGGA------ATACAGGTATA-AAATACATAGATATCAAAAGATGGATGCACATTTACAGAAAAAAAAAGAAAAAATCAAGTTTCCCCA- i canFam3.chr3 C 0 C 0 a score=62838.000000 s hg38.chr4_KI270790v1_alt 10851 21 + 220246 CTGCAAAAATATGTGGGGTTC s panTro4.chr4 21397047 21 + 193495092 CTGCAAAAATATGTGGGGTTC i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21574151 21 + 198332218 CTGAAAAAATATGTGGGGTTC i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20186863 21 - 85365473 CTGCAAAAATATGCAGGGTTC i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16652719 21 + 184069350 CTGCAAAAATATATGGAGTTC i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20694945 21 + 189454096 CTGCAAAAATATATGGAGTTC i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16288561 21 + 178775436 CTGCAAAAATATATGGAGTTC i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19775831 21 - 48547382 CTGCAAAAATATGTGGAGTTC i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21121776 21 - 190850796 CTGCAAAGATATGTGGGTTTC i calJac3.chr3 C 0 C 0 s canFam3.chr3 3713407 21 - 91889043 TTGCAAAAAAAAAAAAAAGTT i canFam3.chr3 C 0 C 0 e mm10.chr5 49116720 1736 + 151834684 I a score=383959.000000 s hg38.chr4_KI270790v1_alt 10872 109 + 220246 TTCTGAGGTTAATAATTATTACATAA-GACCAATGATAAAACTGCATTTCTTTGTTATGAAGCCTAAGATATTAGGTGTGTTTTCATGCAATTGCATTTTA-AAAACAATT s panTro4.chr4 21397068 109 + 193495092 TTCTGAGGTTAATAATTATTACATAA-GACCAATGATAAAACTGCATTTCTTTGTTATGAAGCCTAAGATATTAGGTGTGTTTTCATGCAATTGCATTTTA-AAAACAATT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21574172 109 + 198332218 TTCTGAGGTTAATAATTATTACATAA-GACCAATGATAAAACCACATTTCTTTGTTATGAAGCCTAAAATATTAGGTGTGTTTTCATGCAATTGCATTTTA-AAAACAATT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20186884 109 - 85365473 TTCTGAGGTTAATAATTATTACATAA-GACCAATGATAAAACCACATTTCTTTGTTATGAAGCCTAAAATACTAGGTGTGTTTTCATGCAATTGCATTTTA-AAAACAATT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16652740 109 + 184069350 TTCTGAGGTTAATAATGATTACATAA-GACCAACGATAAAACCGCATTTCTTTGTTATGAAGCCTAAAATATTAGGTGTGTTTTCATGCAATTACATTTTT-AAAACAGTT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20694966 109 + 189454096 TTCTGAGGTTAATAATGATTACATAT-GACCAACGATAAAACCGCATTTCTTTGTTATGAAGCCTAAAATATTAGGTGTGTTTTCATGCAATTACATTTTT-AAAACAGTT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16288582 109 + 178775436 TTCTGAGGTTAATAATGATTACATAA-GACCAACGATAAAACCGCATTTCTTTGTTACGAAGCCTAAAATATTAGGTGCGTTTTCaggcaattatatttta-aaaacagtt i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19775852 109 - 48547382 TTCTGAGGTTAATAATGATTACATAA-GACCAACGATAAAACCGCATTTCTTTGTTATGAAGCCTAAAATATTAGGTGTGTTTTCATGCAATTACATTTTA-AAAACAGTT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21121797 109 - 190850796 TTTTGAGGTTAATAACTATTACATGA-CATCAATGACAAAATTGCATTTCTTTGTTAAGAAGTCTAAAATATTAAGTGTGTTTTCATGCAATTGCATTTTA-AAGACAATT i calJac3.chr3 C 0 C 0 s mm10.chr5 49118456 101 + 151834684 TTCTAAGGATAA-AATTACCACATAG-GATTAATGATGAAATTGCATTTCTTTATTATATTCTCCATA--------TGTATTTTAAAACAAATGTGTTGTACAAAACAATT i mm10.chr5 I 1736 I 92 s canFam3.chr3 3713428 104 - 91889043 -------TTTAAAGCTTATTATATAAGGACTGATGACAAAACTATATTTCTTAGCTTTGACCAGCAAAGTACAAGGTAGTTTTTAATGCAATTACACTTAAAAAAACAAAT i canFam3.chr3 C 0 C 0 a score=126774.000000 s hg38.chr4_KI270790v1_alt 10981 35 + 220246 ----CT-TGCAATCATCTTATTTTGTAGTGATGTTCATGA s panTro4.chr4 21397177 36 + 193495092 ----CTGTGCAATCATCTTATTTTGTAGCGATGTTCATAA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21574281 36 + 198332218 ----CTGTGCAATCATCTTATTTTGTAGTGATGTTCATAA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20186993 36 - 85365473 ----CTGTGCAATCATCTTATTTTGTAGTGATGTTCATAA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16652849 36 + 184069350 ----CTGTGTAATCATCTTATTTTGTAGTGATGTTCACAA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20695075 36 + 189454096 ----CTGTGTAATCATCTTATTTTGTAGTGATGTTCACAA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16288691 36 + 178775436 ----ctgtgcaatcatcttaTTTTGTAGTGATGTTCACAA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19775961 36 - 48547382 ----CTGTGTAATCATCTTATTTTGTAGTGATGTTCACAA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21121906 36 - 190850796 ----CTGTGCAATCATCTTATTTTGTAGTGATGTTCACAA i calJac3.chr3 C 0 C 0 s canFam3.chr3 3713532 40 - 91889043 CCATGTATGCAATCATCTCGTTTTGAGGTGAGATTCATAA i canFam3.chr3 C 0 C 0 e mm10.chr5 49118557 92 + 151834684 I a score=394356.000000 s hg38.chr4_KI270790v1_alt 11016 117 + 220246 ACATACTT-----AATAATAGA------------------------TACATTTT---TTATTACAACAAAATACTACTTTAATAAAAACACCAAGTTATTTCGAAATGCACAGGAAAAGT-TTCTCTCCATTGTTGTGCATGCTGAAAGA s panTro4.chr4 21397213 117 + 193495092 ACATACTT-----AATAATAGA------------------------TACATTTT---TTATTACAACAAAATACTACTTTAATAAAAACACCAAGTTATTTCGAAATGCACAGGAAAAGT-TTCTCTCCATTGTTGTGCATGCTGAAAGA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21574317 117 + 198332218 ACATACTT-----AATAATAGA------------------------TACATTTT---TTATTACAACAAAATACTACTTTAATAAAAACACCAAGTTATTTCGAAATGCACAGGAAAAGT-TTCTCTCCATTGTTGTGCATGCTGAAAGA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20187029 116 - 85365473 ACATACTT-----AATAGTAGA------------------------TACA-TTT---TTATTACAACAAAATACTACTTTAATAAAAACACCAAGTTCTTTTGAAATGCACAGGAAAAGT-TTCTCTCCACTGTTGTGCATGCTGAAGGA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16652885 116 + 184069350 ACATACTT-----AATAGTAGA------------------------TACG-TTT---TTATTACAACAAAATATTACTTTAATAAAAACACCAAGTTATTTCAAAATGCACAGGAAAAGT-TTCTCTCCATTGTTGTGCATGCTGAAAGA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20695111 116 + 189454096 ACATACTT-----AATAGTAGA------------------------TACG-TTT---TTATTACAACAAAATATTACTTTAATAAAAACACCAAGTTATTTCAAAATGCACAGGAAAAGT-TTCTCTCCATTGTTGTGCATGCTGAAAGA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16288727 116 + 178775436 ACATACTT-----AATAGTAGA------------------------TACG-TTT---TTATTACAACAAAGTGTTACTTTAATAAAAACACCAAGTTATTTCAAAATGCACAGGAAAAGT-TCCTCTCCATTGTTGTGCATGCTGAAAGA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19775997 116 - 48547382 ACATACTT-----AATAGTAGA------------------------TACG-TTT---TTATTACAACAAAATATTACTTTAATAAAAACACCAAGTTATTTCAAAATGCACAGGAAAATT-TCCTCTCCATTGTTGTGCATGCTGAAAGA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21121942 115 - 190850796 ACATACTT-----AATAGTAGA------------------------CACA-TTT---TTATTATAACAAAATAA-GCTTTAATAAAAAAACCATGTTACTTCAAAATGCACAGGAAAAGT-TTCTCTCCATTGTTGTACAGTCTGAAAGA i calJac3.chr3 C 0 C 0 s mm10.chr5 49118649 114 + 151834684 ACATACCTGTAAGAAAATTAAA------------------------TACC-TTT---TTCTTTTAAAAAAA--------AAAAAAAGACCTCTAACTGTTTCAAAGTGCTTTGGAGGAGGATTTTATTGAAGGCTGCATTTGCTGAAAGA i mm10.chr5 I 92 C 0 s canFam3.chr3 3713572 142 - 91889043 ACATTTAT-----AATGATATAATCTCCCCCCATATTTAACATTCTTACA-TTTCAATTATTATTATTAAGTATTATTTTGATAAA-ACACTGAGATATTTCGAAATGCATGGGGTGATT-TTCGCTCCCTTAGTGCGCATGCTAAAAGA i canFam3.chr3 C 0 I 164 a score=1499830.000000 s hg38.chr4_KI270790v1_alt 11133 438 + 220246 CCAC------------------------------------------------------------------------------AGTGGGAAGCACACA-GGCAGAGGGAAATCTCAGAAATATGAACTGTAACACCACACA---TAGCAGCATTCTGGTCTCACAAGTCAGTAGATACTTTCCCCACTAAAATTTTGTT-TCAATAATTAATATAAGCTTTTTTCATCTGAAGTATCTCTAAATCAGAGAAGGTTAAAATCAATCTGTATGTATGAACTTGCTGACAAGCTAGTGTAGCC---ACTTGCCTTTAGGTTTTTAT-------------TAT-TTTCCCAGTGGCTGATGGGCAGGCAGCAGTGTTAAGCCTG----CTAACTGAAACATATTCTAAATTATATGGATCTCTGGAGGGGATGCATTCTACTTAACCTTGGCGTTTGTTTTAAATTACAGGAATCTACCA-----TATTATATTATCCAAGA-TTTTTAAAAATAGC-TTTTATTCCTTTTCT-AAATTGCATCTCAAGGTTGTT s panTro4.chr4 21397330 438 + 193495092 CCAC------------------------------------------------------------------------------AGTGGGAAGCACACA-GGCAGAGGGAAATCTCAGAAATATGAACTGTAATACCACACA---TAGCAGCTTTCTGGTCTCACAAGTCAGTAGATACTTTCCCCACTAAAATTTTGTT-TCAATAATTAATATAAGCTTTTTTCATCTGAAGTAACTCTAAATCAGAGAAGGTTAAAATCAATCTGTATGTATGAACTTGCTGACAAGCTAGTGTAGCC---ACTTGCCTTTAGGTTTTTAT-------------TAT-TTTCCCAGTGGCTGATGGGCAGGCAGCAGTGTTAAGCCTG----CTGACTGAAACATATTCTAAATTATATGGATCTCTGGAGGGGATGCATTCTACTTAACCTTGGCGTTTGTTTTAAATTACAGGAATCTACCA-----TATTATATTATCCAAGA-TTTTTAAAAATAGC-TTTTATTCCTTTTCT-AAATTGCATCTCAAGGTTGTT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21574434 437 + 198332218 CCAC------------------------------------------------------------------------------AGTGGGAAGCACACA-GGCGGAGGGAAATCTCAGAAATATGAACTGTAATACCACACA---TAGCAGCATTCTGGTCTCACAAGTCAGTAGATACTTTCCCCACTAAAATTTTATT-TCAATAATTAATCTAAGCGTTTTTCGTCTGAAGTATCTCTAAATCAGAGAAGGTTAAAATCAATCTGTATGTATGAACTTGCTGACAAGCTAGTGTAGCC---ACTTGCCTTTAGGTTTTTAT-------------TAT-TTTCCCAGTGGCTGATGAGAAGGCAGCAGTGTTAAGCCTG----CTGACTGAAACATATTCTAAATTATATGGATCTCTGGAGGGGATGCATTCTACTTAA-CTTGGCATTTGTTTTAAATTACAGGAATCTACCA-----TATTATATTATCCAAGA-TTTTTAAAAACAGC-TTTTATTCCTTTTCT-AAATTGCATCTCAAGGTTGTT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20187145 439 - 85365473 CCAC------------------------------------------------------------------------------AGTGGGAAGCACACA-GGCGGAGGGAAAGCTCAGAAATCTGAACTGTAATACCACACA---TAGCAGCATTCTGCTCTCACAAGTCAGTAGATACTTTCCCTACTAAAATTTTATT-TCAATAATTAATATAAGCTTTTTTCGTCTGAAGTATCTCTAAATCAGAGAAGGTTAAAATCAATCTGTATGTATGAACTTGCTGACAAGATAGCGTAGCC---ACTTGCCTTTAGGTTTTTAT-------------TAT-TTTCCCAGTGGCCGATGGGCAGGCAGCAGTGTTAAGCCTG----CTGACTGAAACATATTCTAAATTATATGGATCTCTGGAGGGGATGCATTCTACTTAACCTTGGCATTTGTTTTAAATTACAGGAATCTACCA-----TATTATATTATCCAAGA-TTTTTAAAAATAGCTTTTTATTCCTTTTCT-AAATTGCATCTCAAGGTTGTT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16653001 441 + 184069350 CCAC------------------------------------------------------------------------------AGTGGGAAGCACACA-GGTGGGGGGAAATCTGAGAAATGTGAGCTGTAATACCACACA---CAACAGCATTCTGCTCTCACAAGTCAG----TGCTTTCCCCACCGAAATTTTATT-TCAATAATTAATATAAACTTTTTTCGTCTGAAGTGTCTCTAAATCAGAGAAGGTTAAAATCAATGTGTATGTATGAACTTGCTGACAAGCTAGTGTAGCCACTACTTGCCTTTAGGTTTTTAT-------------CAT-TTTCCCAGTGGCTGATGGGCAGGCAGCAATATTAAGCCTGCTGACTAACTGAAACATATTCTAAATTATATGGACCTCTGGAGGGGATGCATTCTACTTAACCTTGGCATTTGTTTTAAATTACAGGAATCTACCA-----TATTATATCATCCAAAA-TTTATAAAAATAGC-TTTTATTCCTTTTCT-AAATTTCATCTCAAGGTTGTT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20695227 441 + 189454096 CCAC------------------------------------------------------------------------------AGTGGGAAGCACACA-GGTGGGGGGAAATCTGAGAAATGTGAGCTGTAATACCACACA---CAACAGCATTCTGCTCTCACAAGTCAG----TGCTTTCCCCACCGAAATTTTATT-TCAATAATTAATATAAACTTTTTTCATCTGAAGTGTCTCTAAATCAGAGAAGGTTAAAATCAATGTGTATGTATGAACTTGCTGACAAGCTAGTGTAGCCACTACTTGCCTTTAGGTTTTTAT-------------CAT-TTTCCCAGTGGCTGATGGGCAGGCAGCAATATTAAGCCTGCTGACTAACTGAAACATATTCTAAATTATATGGACCTCTGGAGGGGATGCATTCTACTTAACCTTGGCATTTGTTTTAAATTACAGGAATCTACCA-----TATTATATCATCCAAAA-TTTATAAAAATAGC-TTTTATTCCTTTTCT-AAATTTCATCTCAAGGTTGTT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16288843 441 + 178775436 CCAC------------------------------------------------------------------------------AGTAGGAAGCACACA-GGCGGAGGGAAATCTGAGAAATATGAACTGTAATACCACACA---CAACAGCATTCTGCTCTCACAAGTCAG----TGCTTTCCCCAccgaaattttatt-tcaataattaataTAAGCTTTCTTCGTCTGAAGTGTCTCTAAATCAGAGAAGGTTAAAATCAATGTGTATGTATGAACTTGTTGACAAGCTAGTGTAGCCATTACTTGCCTTTAGGTTTTTAT-------------CAT-TCTCCCAGTGGCTGATGGGCAGGCAGCAATATTAAGCCTGAGGACTAACTGAAACATATTCTAAATTATATGGACCTCTGGAGGGGATGCATTCTACTTAACCTTGgcatttgttttaaattacaggAATCTACCA-----TATTATATCATCCAAGA-TTtctaaaaatagc-ttttattccttttct-aaatttcatctcgAGGTTATT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19776113 438 - 48547382 CCAC------------------------------------------------------------------------------AGTGGGAAGCACACA-GGCGGAGGGAAATCTGAGAAATATGAACTGTAATACCACACA---CAACAGCATTCTGCCCTCACAAGTCAG----TGCTTTCCCCACTGAAATATTATT-TCAATAATTAATATAAACTTTTTTTGTCTGAAGTATCTCTAAATCAGAGAAGGTTAAAATCAATGTGTATGTATGAACTTGCTGACAAGCTAGTGTAGCC---ACTTGCCTTTAGGTTTTTAT-------------CAT-TTTCCCAGTGGCTGATGGGCAGGCAGCAATTTTAAGCCTGCTGACTAACTGAAACATATTCTAAATTATATGGACCTCTGGAGGGGATGCATTCTACTTAACCTTGGCATTTGTTTTAAATTACAGGAATCTACCA-----TATTATATCATCCAAGA-TTTACAAAAATAGC-TTTTATTCCTTTTCT-AAATTTCATCTCAAGGTTGTT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21122057 444 - 190850796 CCAC------------------------------------------------------------------------------AGTGGGAAGCACATAGGGTGGAGGGAAATCTGAGAAATATGAACTGGAATACCACACA---GAGCAGCATTCTGTTCTCAGCAGTCAGTAGATACTTTCCCTACTAAAGTTTTCTT-TCAATACTTCATATAAACTTTTTTCTTTTGAAGTATCTCTAAATGAGAGAAGATTAAAATCAATCTGTGCGTATGAACTTGCTGACAAGCTAGTTTGGCC---ACTTGCCTTTGGGTTTTTAC-------------TTT-TTTCTCAGTGGCTGATGGGCCGGCAGCAATGTTAAGCCTACTGACTAACTGAAACATATTCTAAATTATATGGGTCTCTGAAGGAAATGCATTCTGCTTAACCTTGGCATTTGTTTTAAATTACAGGAATCCACCA-----TATTATATTATCCAAGATTTTTTAAAAATAGC-TTTTATTCCTTTTCT-AAGTTACATCTCAAGGTTGTC i calJac3.chr3 C 0 C 0 s mm10.chr5 49118763 391 + 151834684 GCA-----------------------------------------------------------------------------------GAAAGCACGTA-TGCAGAGGAACATCT------TATAAACAAAGATACCACAAA---TACCA------TGTGCATATCAGTCCA----TAACTTCCCTTCTGAAATGTTAAT-CCATT-------------------------------TTCTAAACC-TAGAAAGGTAAAATCTGTTTGTATACTTGAATTCTGTAACAAGCT------------GTTTGCTGTAAGATATTTTCAACT------TTATAT-TTTTCTAGTTGCTAATGGGTAATCAATGACATTACTCCTGATGATTAATTGAAAT-TCTTCTGAAATATATGGCCTTATGGATAAGAGGCTTGGTACTTAACCTTCAGCCTTGTTTTAAATCATATGGCTCCACTCAAGTTTATTGTGTTACCCAAG--TTTTAAAAACCAGC-CTTAGTTTCTTTTATAAAATTGCATTTCAGGGTTGGT i mm10.chr5 C 0 I 1 s canFam3.chr3 3713878 517 - 91889043 ccacttcattcatgctcatgtgcttgctctctccctctctccctctctttctcaaataaataaatattttttaaaaaGATGAAGTGGGAAATATGTA-TGGTGGGGGAAATATTAGAAATATAAACTG-GATATCAGATAGATGAGCAACACTTGGTTCTCACAACTCAGCATATACTTTCTCTACAAAAAAAAACTGATCAATACTTAATATAA---TTTTCTTTTTGGAAAA--TCTAAATCTGAGGAGATTAAAATCAATCTATGTGTATCAACTTGCTGATGAGCAAATTTAGCA---CTTTGCCTTTAAGGTTGTGTGTGTGTGGGGGTGTGTGTTTTCCAGTTGCTGATGTGTAATCAGC--------------TGACTAATTGAAACGTTTTCCAAATTATATGGATCTCTGGAGAAGATGCATTCTACTTAACCTTGGCATTTGTTTTAAATTACAGGAATCTACTA-----TATTATATTACCCAAGA-TTT-TAAAATCATA-TTTCATTTATTTCTG-AATTTGCATCTCAAGTTTGTT i canFam3.chr3 I 164 C 0 a score=44329.000000 s hg38.chr4_KI270790v1_alt 11571 53 + 220246 AG---ATTTCCTATTAAAAGCTAATTAATTAAAGAGAAAatacatacatatgtgtg s panTro4.chr4 21397768 53 + 193495092 AG---ATTTCCTATTAAAAGCTAATTAATTAAAGAGAAAATACATACCTGTGTGTG i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21574871 53 + 198332218 AG---ATTTCCTATTAAAAGCTAATTAATTAAAGAGAAAatacatacatatgtgtg i ponAbe2.chr4 C 0 I 374 s nomLeu3.chr20 20187584 53 - 85365473 AG---AGTTCCTATTAAAAGCTAATTAATTAAACAGAAAatacatacatatgtgtg i nomLeu3.chr20 C 0 C 0 s calJac3.chr3 21122501 46 - 190850796 AG---ATTTCCTATTAAAAGCTATTTA-------AGAAAAAatatacatatgtatg i calJac3.chr3 C 0 C 0 s mm10.chr5 49119155 42 + 151834684 AGATTATTTTCCAGTGAAAGATAATGCATTAAGAGGAGTAGA-------------- i mm10.chr5 I 1 C 0 s canFam3.chr3 3714395 43 - 91889043 AG---ATTTCTCTTTGGAAGCTAATGAACTAAAGAAAAAAAAAAAA---------- i canFam3.chr3 C 0 C 0 e chlSab2.chr27 19776551 0 - 48547382 C e macFas5.chr5 20695668 0 + 189454096 C e rheMac3.chr5 16653442 0 + 184069350 C e papAnu2.chr5 16289284 0 + 178775436 C a score=3026.000000 s hg38.chr4_KI270790v1_alt 11624 10 + 220246 agtgtgtata s panTro4.chr4 21397821 10 + 193495092 AGTGTGtata i panTro4.chr4 C 0 C 0 s nomLeu3.chr20 20187637 8 - 85365473 --tgtgtaga i nomLeu3.chr20 C 0 C 0 s calJac3.chr3 21122547 8 - 190850796 --tatatata i calJac3.chr3 C 0 I 2 e mm10.chr5 49119197 0 + 151834684 C e chlSab2.chr27 19776551 0 - 48547382 C e macFas5.chr5 20695668 0 + 189454096 C e rheMac3.chr5 16653442 0 + 184069350 C e canFam3.chr3 3714438 0 - 91889043 C e papAnu2.chr5 16289284 0 + 178775436 C e ponAbe2.chr4 21574924 374 + 198332218 I a score=12650.000000 s hg38.chr4_KI270790v1_alt 11634 17 + 220246 tatatgtatatatacat s panTro4.chr4 21397831 17 + 193495092 tatatgtatatatacat i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21575298 17 + 198332218 tatatgtatacatacat i ponAbe2.chr4 I 374 C 0 s nomLeu3.chr20 20187645 17 - 85365473 tatatgtatatatacat i nomLeu3.chr20 C 0 C 0 s calJac3.chr3 21122557 17 - 190850796 cacacatatatatatat i calJac3.chr3 I 2 I 316 e mm10.chr5 49119197 0 + 151834684 C e chlSab2.chr27 19776551 0 - 48547382 C e macFas5.chr5 20695668 0 + 189454096 C e rheMac3.chr5 16653442 0 + 184069350 C e canFam3.chr3 3714438 0 - 91889043 C e papAnu2.chr5 16289284 0 + 178775436 C a score=255532.000000 s hg38.chr4_KI270790v1_alt 11651 229 + 220246 atgtatatatata-CTCTTCTACACCTGCCAGCCAGAACCAACAATAATATTGTCCCAAGCTATATAGTACCTGCTTCCAAAGAAGTTTAAAATCCATTTTAGAGAGCCAATTATTGATGTTTAAA--GTCTGT-AAATCATGAAGGTAGCAATACTTCTAAGTATCAAAATAAAAGCTATGAA----ATGCCATATCATGAATATATGCTCTC-TCACTTAAACTG----TTAGAATTTTC s panTro4.chr4 21397848 229 + 193495092 atgtatatatata-CTCTTCTACACCTGCCAGCCAGAACCAACAATAATATTGTCCCAAGCTATATAGTACCTGCTTCCAAAGAAGTTTAAAATCCATTTTAGAGAGCCAATTATTGATGTTTAAA--GTCTGT-AAATCATGAAGGTAGCAATACTTCTAAGTATCAAAATAAAAGCTATGAA----ATGCCATATCATGAATATATGCTCTC-TCACTTAAACTG----TTAGAATTTTC i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21575315 229 + 198332218 atgtatatatata-CTCTTCTATACGTGCCAGCCAGAACCAACAATAATGTTGTTTCAAGCTATATAGTACCTGCTTCCAAAGAAGTTTAAAATCCTTTTTAGAGAACCAATTATTGATGTTTAAA--GTCTGT-AAATCATGAAGGTAGCAATACTTCTAAGTATCAAAATAAAAGCTATGAA----ATGCCATATCATGAATATATGCTCTC-TCACTTAAACTG----TTAGAATTTTC i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20187662 228 - 85365473 atgtatgtatata-CTCTTCTACACACGCCAGCCAGAACCAACAATAATATTGTTTCAAGCTATATACTACCTGCTTCCAAAGAAGTTTAAAATCCCTTTTAGAGAACCAATTATTGA-GTTTAAA--GTCTGT-AAATCATGAAGGTAGGAATACTTCTAAGTATCAAAATAAAATCTATGAA----ATGGCATATCATGAATATATGCTCTC-TCACTTAAACTG----TTAGAATTTTC i nomLeu3.chr20 C 0 C 0 s calJac3.chr3 21122890 230 - 190850796 atatatatatatatTTTTTTTACACATGCCAGCCAGAACCAAGAATA---TGGTTTCTAGCTATATAGTATCCTCTTCCAAATAAGCTTAAAATC--TCTTAGACAACCAATTATTGATGTTTAAA--GTCTGT-AAATCATGAAGGTAGCAATACTTCTAAGTATCAAAATGAAAGCTATGAAA-TGATGGCATATCATGA--ATATGCTCTC-TCGCTTAAACTGACTATTCAAAttttt i calJac3.chr3 I 316 C 0 s mm10.chr5 49119197 227 + 151834684 --------ATAGC-ATTCTCTACCAGTATCAGCCAGAAGCAATGATGATATTAATTCTAGATCAATAATGTCTTTCTCCAAAGAAGCTTAAAATCTCTTTTAGATAAATAATCATTAATTTTTAAAGTGTCTGT-AAATAAGGGAATTGACAAAACTTTCAAGTACCAAAATAGAAGCTATGAA--TAGTGTCATGTAATAA--AAATGAATCC-CCACTTAAGCTGAGTGCTAGGATTATC i mm10.chr5 C 0 I 1242 s canFam3.chr3 3714438 232 - 91889043 ----ACACACATC-CTCTTCTACACAT----GCCTGAAACAGCAATAATATTGTTTATAGCTATGTAGTATCTTCTTCCGAAGGAGTTAAAAATCCCTTTTAGGTGACC-ATTACAAATCTTTAAAGTGTCTGTAAAATCAGGGAAGTAGTAAGATACCTAAATAGCAAAATGGAAGCCACGGAAGTAGGAGCATGTTATGAATGTGGATTCCCTTCCCTTAATCCGATGGCTAGAATGCTC i canFam3.chr3 C 0 I 825 e chlSab2.chr27 19776551 0 - 48547382 C e macFas5.chr5 20695668 0 + 189454096 C e rheMac3.chr5 16653442 0 + 184069350 C e papAnu2.chr5 16289284 0 + 178775436 C a score=646.000000 s hg38.chr4_KI270790v1_alt 11880 3 + 220246 ATT s panTro4.chr4 21398077 3 + 193495092 att i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21575544 3 + 198332218 ATT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20187890 2 - 85365473 A-T i nomLeu3.chr20 C 0 C 0 s calJac3.chr3 21123120 3 - 190850796 att i calJac3.chr3 C 0 I 244 e mm10.chr5 49119424 1242 + 151834684 I e chlSab2.chr27 19776551 0 - 48547382 C e macFas5.chr5 20695668 0 + 189454096 C e rheMac3.chr5 16653442 0 + 184069350 C e canFam3.chr3 3714670 825 - 91889043 I e papAnu2.chr5 16289284 0 + 178775436 C a score=34714.000000 s hg38.chr4_KI270790v1_alt 11883 49 + 220246 TTTTAAATAAATTTTATTGTATGTATTTCAGGTATACAACACGATGCTA s panTro4.chr4 21398080 49 + 193495092 ttttaaataaattttattGTATGTATTTCAGGTATACAACACGATGCTA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21575547 49 + 198332218 TTTAAAATACATTTTCTTGTATATATTTCAGGTATACAACACGATGTTA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20187892 49 - 85365473 TTTAAAATAAATTTTATCGTATATATTTCAGGTATACAACGTGATGCTA i nomLeu3.chr20 C 0 C 0 s calJac3.chr3 21123367 46 - 190850796 tTTAAAATAAATGTTATTGTATATATTTCAGGTATATA---TAATGCTA i calJac3.chr3 I 244 C 0 e mm10.chr5 49119424 1242 + 151834684 I e chlSab2.chr27 19776551 0 - 48547382 C e macFas5.chr5 20695668 0 + 189454096 C e rheMac3.chr5 16653442 0 + 184069350 C e canFam3.chr3 3714670 825 - 91889043 I e papAnu2.chr5 16289284 0 + 178775436 C a score=1365.000000 s hg38.chr4_KI270790v1_alt 11932 1 + 220246 T s panTro4.chr4 21398129 1 + 193495092 T i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21575596 1 + 198332218 T i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20187941 1 - 85365473 T i nomLeu3.chr20 C 0 C 0 s calJac3.chr3 21123413 1 - 190850796 T i calJac3.chr3 C 0 C 0 s mm10.chr5 49120666 1 + 151834684 T i mm10.chr5 I 1242 C 0 e chlSab2.chr27 19776551 0 - 48547382 C e macFas5.chr5 20695668 0 + 189454096 C e rheMac3.chr5 16653442 0 + 184069350 C e canFam3.chr3 3714670 825 - 91889043 I e papAnu2.chr5 16289284 0 + 178775436 C a score=121167.000000 s hg38.chr4_KI270790v1_alt 11933 104 + 220246 TCCTGCTCTGTTTGCTATTCAAAATCTCCCCCTTTTGAAATAATATCACTAAAAGGACTAAAAGCAAA----TTGTTTGCTTA----ATGGGTTGACTGATTTTTAAAGACT s panTro4.chr4 21398130 104 + 193495092 TCCTGCTCTGTTTGCTATTCAAAATCTCCCTCTTTTTAAATAATATCACTAAAAGGACTAAAAGCAAA----TTGTTTGCTTA----ATGGGTTGACTGATTTTTAAAGACT i panTro4.chr4 C 0 I 1317 s ponAbe2.chr4 21575597 104 + 198332218 TCCTGCTCTGTTTGCTATTCAAAATCTCCCTCTTTTTAAAAAACATCACTAAATGGACTAAAAGCAAA----TTGTTTGCTTA----ATGGGTTGACTGATTTTTAAAGACT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20187942 103 - 85365473 TCCTGCTCTGTTTGCTATTCAAAATCTCCCTCTTTTTAAAAAA-ATCACTAAATGGACTAAAAGCAAA----TCGTTTGCTTA----ATGGGTTGACTGATTTTTAAAGACT i nomLeu3.chr20 C 0 C 0 s calJac3.chr3 21123414 108 - 190850796 TACTGCTCTGTTTGCTATTCAAAATCTCCCTCTTTTGTTAAAATATCACTAAATGTAATAAAAACAAATTGTTTGTTTGTTTA----ATGCATTGACTGATTTTTAAAGACT i calJac3.chr3 C 0 C 0 s mm10.chr5 49120667 102 + 151834684 CCCTGCCCTGTTTACTATGCAAA------TTCTTTTTTAAAGTTATGGCTTGTTAACCTAGAAGGACAACACTTGCATGCTTC----ATGGATTGACTGATTTCCAAAGGAG i mm10.chr5 C 0 I 1 s canFam3.chr3 3715495 104 - 91889043 TCCTGCCCTGTTTGCTCTTCCAAGTATTCTTCTTTTATTAAAATATTACTAATT----TGAAAACAAA----TTGCTTGCTTATTGGATGAATTGAGTAATTTTTAAAGAAT i canFam3.chr3 I 825 C 0 e chlSab2.chr27 19776551 0 - 48547382 C e macFas5.chr5 20695668 0 + 189454096 C e rheMac3.chr5 16653442 0 + 184069350 C e papAnu2.chr5 16289284 0 + 178775436 C a score=3393.000000 s hg38.chr4_KI270790v1_alt 12037 3 + 220246 -------------AAA s panTro4.chr4 21399551 3 + 193495092 -------------AAA i panTro4.chr4 I 1317 C 0 s ponAbe2.chr4 21575701 3 + 198332218 -------------AAA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20188045 3 - 85365473 -------------AAA i nomLeu3.chr20 C 0 C 0 s calJac3.chr3 21123522 3 - 190850796 -------------AAA i calJac3.chr3 C 0 C 0 s mm10.chr5 49120770 3 + 151834684 -------------AAA i mm10.chr5 I 1 C 0 s canFam3.chr3 3715599 16 - 91889043 AATAATAATAACAAAA i canFam3.chr3 C 0 C 0 e chlSab2.chr27 19776551 0 - 48547382 C e macFas5.chr5 20695668 0 + 189454096 C e rheMac3.chr5 16653442 0 + 184069350 C e papAnu2.chr5 16289284 0 + 178775436 C a score=2680112.000000 s hg38.chr4_KI270790v1_alt 12040 771 + 220246 AGAGTCAAA-TATA-GATGACACCAAAATGTGGTCCAGAACCAATAGCTTGTCTAGCCTGAAGACCGGATGAATTATTTTACCCCATTTTAGACCATTTCCATCTGTTAT-TTCCAA-CACAAATTAAATAAGTCACAAGAAGGTATCATGATCAAGGATACCTTTCTGGAGAATAG----CCATGTTGATTTTAAACTAACAGAAATTTATTTGTGGGGTAAGTATGGATACTTAATAAGG----AAAAACAG--AAAAAAACTTTTAATA-GTCCCTTATTTATTTCAGGTACTGTGTTAGCTAGGTATTTTACTTATTCCTTCTCAGCGAATACT-ATAAAACCCATTTATTAAGAAATTGAGGCT----------AGAC--------GATGTAAAAGAAAT---G-AATCTGGACCAATTCCTGCAAATCATGTTAGGAAGTTACAAGAAAGTAAAAAGATTCATAGTCAATCAAGTGCTGTGAATAGCCATTGAGCTCTGGAAAGCCATAGAAGCAGACACATTAGATACAGGATAGATGGTTCCTGTAGAAAGCTTTACAGAAACTGAAAAAGCCTAAAGCTACTTAAATGATGGTAacagtagggtagagtagtacttaaccatatgacctttgg--cta--gactactgtattt--gaattacggctctgtcacacactaaatatatgattattgataagttattcaccatctcagtgcctcagtttccttctttataaaattgcaataggacctactgtataaaacctgtgataatttggtgtc-aaatgcacataaa---aca--tagcat s panTro4.chr4 21399554 771 + 193495092 AGAGTCAAA-TATA-GATGACACCAAAATGTGGTCCAGAACCAATAGCTTGTCTAGCCTGAAGACCGGATGAATTATTTTATCCCATTTTAGACCATTTCCATCTGTTAT-TTCCAA-CACAAATTAAATAAGTCACAAGAAGGTATCATGATCAAGAATACCTTTCTGGAGAATAG----CCATGTTGATTTTAAACTAACAGAAATTTATTTGTGGGGTAAGTATGGATACTTAATAAGG----AAAAACAG--AAAAAAACTTTTAATA-GTCCCTTATTTATTTCAGGTACTGTGTTAGCTAGGTATTTTACTTATTCCTTCTCAGTGAATACT-ATAAAACCCATTTATTAAGAAATTGAGGCT----------AGAC--------GATGTAAAAGAAAT---G-AATCTGAACCAATTCCTGCAAATCATGTTAGGAAGTTACAAGAAAGTAAAAAGATTCATAGTCAATCAAGTGCTGTGAATAGCCATTGAGCTCTGGAAAGCCATAGTAGCAGACACATTAGATACAGGATAGATGGTTCCTGTAGAAAGCTTTACAGAAACTGAAAAAGCCTAAAGCTACTTAAATGATGGTAacagtagggtagagtagtacttaaccatatgacctttgg--cta--gactactgtattt--gaattacggctctgtcacccactaaatatatgattattgataagttatttaccatctcagtgcctcagtttccttgtttataaaattgcaataggacccactgtataaaacctgtgataatttggtgac-aaatgcacataaa---aca--tagcat i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21575704 771 + 198332218 AGAGTCAAA-TATA-GACGACACCAAAATGTGGTCCAGAACCAATAGCTTGTCTAGCCTGAAGACTGGATGAATTATTCTATCCCATTTTAGACCATTTCCATCTGTTAT-TTCCAA-CACAAATTAAATAAGTCACAAGAAGCTATCATGATCAAGAATACCTTTCTGGAGAATAG----CCATGTTGATTTTAAACTAACAGAAATTTATTTGTGGGTTAAATATGGATGCTTAATAAGG----AAAAACAG--AAAAAAACTTTTAATA-GTCCCTCATTTATTTCAGGTACTGTGTTAGCTAGGTATTTTACTTATTCCTTCTCAGTGAATACT-ATAAAACCCATTTACTAAGAAATTGAGGCT----------AGAC--------GATGTAAAAGAAAT---G-AATCTGGACCAATTCCTGCAAATCATGTTAGGAAGTTACAAGAAAGTAAAAAGATTCATAGTCAATCAAGTGCTGTGAATAGCCATTGAGCTCTGGAAAGCCATAGAAGCAGACACATTAGATACAGGATAGATGGTTCCTGTAGAAA-CTTTACAGAAACTGCAAAAGCCTAAAGCTCCTTAAATGATGGTAacagtagggtggagtagcacttaaccatatgacctttgg--cta--gactactgtattt--gaattacagctctgtcacacactaaatatatgattattgataagttatttaccatcttggtgcctcaggttccttgtttataaaactgaaataggacctactgtataaaacctgtgataatttggtgactaaatgcacataaa---aca--cagcat i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20188048 772 - 85365473 AGAGTCAAA-TATA-AATGACACCAAAATGTGGTCCAGAACCAATAGCTTGTCTAGCCTGAAGACTGGGTGAATTATTCTATCCCATTTTAAACCATTTCCAACTGTTAT-TTCCAA-CACAAATTAAATAAGTCACAAGAAGCTATCATGATCAAGAATACCTTTCTGGAGAATAG----CCATGTTGATTTTAAACTAACAGAAATTTATTTGTGGGTTGAATATGGATGCTTAATAAGG----AAAAACAG--AAAAAAACTTGTAATA-GTCCCTCATTTATTTCAGGTACTGTGTTAGCTAGGTATTTTACTTATTCCTTCTCAGCAAATACT-ATAAAACCCATTTACCAATAAACTGAGGCT----------AGAC--------AATATAAAAGAAAT---G-AATCTGGACCAATTCCTGCAAATCATGTTAGGAAGTTACAAGAAAGTAAAAAGATTCATAGTCAATCAAGTGCTCTGAATAGCCATTGAGCTCTGGAAAGCCATAGAAGCAGACACATTAGATACAGGATAGATGGTTCCTGTAGAAAGCTTTACAGAAACTGAAAAAGCCTAAAGATCCTTAAATGATGATGacagtagggtagagtagtacttaaccatatgacctttgg--cta--gactactgcattt--gaattacagctctgtcacacactaaatatatgattattgataagttatttaccatctcggtgcctcagtttccttgtttataaaattgcaataggacctactgtataaaacttgtgataatttggtgactaaaggcacataaa---ata--cagcat i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16653442 774 + 184069350 AGAGTCAAA-TTTA-GATGACACCAAAATGTGGTACAGAACCAATAGCTTGTGTAGCCTGAAGACTGGATGAATTATTCTATCCCATTTTAGACCATTTCCAACTGTTAT-TTCCAA-CACAAATTAAATAAGCCACATGAAGCTATCATGATCAAGAATATCTTTCTGGAAAATAG----CCATGTTGATTTTAAACTAACAGAAATTTATTTGTGGGTTATGTATGGATGTTTAATAAGG----AAAAACAG-AAAAAAAACTTTTAATATGTACCTCATTTATTTCAGGTATTGTGTTAGCTAGGTATTTTACTTATCCCTTCTCAACGAATACT-ATAAAACCCATTTACTAAGAAATTGAGGCT----------AGAT--------GATGTAAAAGAAAT---G-AACCTGGACCAATTCTTGCAAATCATGTTAGGAAGTTACAAGAAAGTAAAAAGATTCATAGTAAATCAAGTGCTGTGAATAGCCATTGAGCTTTGGAAAGCCATAGAAGCAGACACATTGGATACAGGATAGATGGTTCCTGTAGAAAGCTTTACAGAAACTGAAAAAGCCTAAAGCTCCTTAAATGATGGTAACAGTagtgtagagtagtacttaactgtatgacctttgg--cta--gactactgtattt--gaattacaactctgtcacacaccaaatatatgattcttgataagctatttaccatctctgtgcctcagtttccttgtttataaaattgcaataggacctactgtatgaaacctgtgataatttggtgactaaatgcacataaa---aca--cagcat i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20695668 774 + 189454096 AGAGTCAAA-TTTA-GATGACACCAAAATGTGGTACAGAACCAATAGCTTGTGTAGCCTGAAGACTGGATGAATTATTCTATCCCATTTTAGACCATTTCCAACTGTTAT-TTCCAA-CACAAATTAAATAAGCCACATGAAGCTATCATGATCAAGAATATCTTTCTGGAAAATAG----CCATGTTGATTTTAAACTAACAGAAATTTATTTGTGGGTTATGTATGGATGTTTAATAAGG----AAAAACAGAAAAAAAAACTTTTAATAAGTACCTCATTTATTTCAGGTATTGTGTTAGCTAGGTATTTTACTTATCCCTTCTCAACGAATACT-ATAAAACCCATTTACTAAGAAATTGAGGCT----------AGAC--------GATGTAAAAGAAAT---G-AACCTGGACCAATTCTTGCAAATCATGTTAGGAAGTTACAAGAAAGTAAAAAGATTCATAGTAAATCAAGTGCTGTGAATAGCCAATGAGCTTTGGAAAGTCATAGAAGCAGACACATTGGATACAGGATAGATGGTTCCTGTAGAAAGCTTTACAGAAACTGAAAAAGCCTAAAGCTCCTTAAATGATGGTAACAGTagtgtagagtagtacttaactgtatgacctttgg--cta--gactactgtattt--gaattacaactctgtcacacactaaatatatgattcttgataagctatttaccatctctgtgcctcagtttccttgtttataaaattgcaataggacatactgtatgaaacctgtgat-atttggtgactaaatgcacataaa---aca--cagcat i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16289284 765 + 178775436 AGAGTCAAA-TATA-GATGACACCAAAATGTGGTACAGAACCAATAGCTTGTGTAGCCTGAAGATTGGATGAATTATTCTATCCCATTTTAGACCATTTCCAACTGTTAT-TTCCAA-CACAAATTAAATAAGCCACAGGAAGCTATCATGATCAAGAATATCTTTCTGGAAAATAG----CCATGTTGATTTTAAactaacagaaatttatttgtggGTTATGTATGGATGTTTAAtaagg----aaaaacaggaaaaaaaacttttaatacgT---TCATTTATTTCAGGTATTATGTTAGCTAGGTATTTTACTTATCCTTTCTCAGCGAATACT-ATAAAACCCATTTACTAAGAAATTGAGGTT----------AGAC--------GATGTAAAAGAAAT---G-AATCTGGACCAATTCTTGCAAATCATGTTAGGaagttacaagaaaataaaaagattcctAGTAAATCAAGTGCTGTGAATAGACATTGAGCTTTGGAAAGCCATAGAAGC-------TTGGATACAGGATAGATGGTTCCTGTAGAAAGCTTTACAGAAACTGAAAAAGCCTAACGCTCCTTAAATGATGGTAACAGTAGTGTAGAGTAGTACTTAACTGTATGACCTTTGG--CTA--GACTACTGTATTT--GAATTACAACTCTGTCACACACTAAATACATGATTCTTGATAAGTTATTTaccatctctgtgcctcagtttccttgtttataAAATTGCAATAGGACCTACTGTATGAAACCTGTGATAATTTGGTGACTAAATGCACATAAA---ACA--CAGCAT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19776551 775 - 48547382 AGAGTCAAA-TATA-GATGACACCAAAATGTGGTACAGAACCAATAGCTTGTGTAGCCTGAAGATTGGATGAATTACTCTATCCCATTTTAGACCATTTCCAACTGTTAT-TTCCAA-CACAAATTAAATAAGCCACAAGAAGCTATCATGATCAAGAATATCTTTCTGGAAAATAG----CCATGTTGATTTTAAACTAACAGAAATTTATTTGTGGGTTATGTATGGATGTTTAATAAGG----AAAAACAGAAAAAAAAACTTTTAATAAGTACCTCATTTACTTCAGGTATTGTGTTAGCTAGGTATTTTACTTATCCCTTCTCAGCAAATACT-ATAAAACCCATTTACTAAGAAATTGAGGCT----------AGAC--------GATGTAAAAGAAAT---G-AATCTGGACCAATTCTTGCAAATCATGTTAGGAAGTTACAAGAAAGTAAAAAGATTCATAGTAAATCAAGTGCTGTGAATAGCCATTGAGCTTTGGAAAGCCATAGAAGCAGATACATTGGATACAGGATAGATGGTTCCTGTAGAAAGATTTACAGAAACTGAAAAAGCCTAAAGCTCCTTAAATGATGGTAACAGTagtgtagagtagtacttaactgtatgacctttgg--cta--gactactgtattt--gaattacagctctgtcacacactaaatatatgattcttgatcagttatttaccatctctgtgcctcagtttccttgtttataaaattgcaataggacctacggtataaaacctgtgataatttggtgactaaatgcacataaa---aca--cagcat i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21123525 773 - 190850796 AAATTCAAA-TT----GTGACATCAAAATGTGGTCCAGAACCAAT-GCTTGTCTAGCCTCATGACTGGATGGATTATTTGATCCCATTTTAGATCATGCCCATCTGTTAT-TTCCAAGCACAAATTAAATAAGTCACAGGAAGCTATCATGATGAAGAACACCTTTCTGGAGAACAG----CCGTGTTCATTTCAAACTTACAGAAATTTATTTGGGGGTTAAGTATGAATGGCTAATAAGG----AAAAACAG-GAAAAAAACTTTTAATAAGTACCTCATTTATTTCAGGTACTGTGTTAGCTAGGTTTTTCCCT--TTCCTTCTCAGCGAATACT-ATAAAACTCATTTA-TAAGAAACGGAGGCT----------AGAC--AAACGTAATGTAAAAGAAAT---T-AATCTGGACAAATTCCTGCAAATCATGTTAGGAAGTTACAAGAAAGTAAAAAGATTTATAGTAAATCAAGTGCTGTGAGTAGCCACTGAGCTTTAGAAAGCCATAGAAGCAGACACATAAGATACAGGATAGATGGTTCCTGTAGAAAGCTTTACAGAAAGTGAAAAAGCCTAAAGCTCCTTAAATGATGGTAGCAGTAATGTAGAGTAGGACTTAACCAAATGAtctgtgg--cta--gactactgagttt--acattacagctgggtcacacactgaatatatgattcttgataagttatttaccatctctgtgcctcagttttcttgcttataata--agaataggacctattgcacaaagcctgtgataatttagtgactgaatgcacataaa--cact--tagcat i calJac3.chr3 C 0 C 0 s mm10.chr5 49120773 754 + 151834684 AGGGTCAAAGTCTG-AATGAAGTAAAAATAAGACCCAGGACCAATTGCTCATCTATTTTGCTAACTATATT-ATTCCCCTAAGCTGTTTTAGCACATTTTTGACTG------------CAAAAGATTAATTTCCCATGGGAAGATATCATGATCAATAATGA----CTGCAGAACAA----CCACGTTGATTTCAAACATTTTGAAATATATCTAGAGCTTTTTTATGGGCA---AGTAAAGCCCAGAAAAC----TAAAAACATCTTAATAAATGCTTCATTTATTATAGGTACTGTTGCATATGGGTTTATCATTTACTACTTCTCAGTGAAAAATGATAAAAATCATTCACCAAGGAATTGAGGCT----------ATATAGAGAAAAGTCATAAAAGGGACTTAA-AATCTGGAACAGTTTCTACAAATCGTGTAAACAAGTTCCAAGAGAAGACAAACGCT-ACAGTAACGTAAGTGCTCTGA-TGTCCACTGAGAATTGG-AAGCCACAGAAGCAAATATATCAGGCCTGGTGTGGGCAATTCCTAGTGAAAATTTCATAGAAAC--GAAAATCCCAAATCTTTCCAGCTGATGAGAACAGTGTC-----ATAGTCCCTGG-GGTATGATTTtcag--gcattggcgtctgagttt--agtt-----ctctgt-acacacaaagtatgaagctgcggtcaaatagcttaccatctctctgcctcggtttcctgaactcttaaatgtaaatgataTCTCTTACATTTACTTTGT----ATTTCAAAGTTAAGTGTATATAAAAGTATA--TATCAT i mm10.chr5 C 0 C 0 s canFam3.chr3 3715615 781 - 91889043 AAAGGTAAA-TAGAGGATGACATCAAACAGTGGTCCAGGAGCAATAGCTTGTCTAGCCCACTAACCAGCTTAATGGTCCTACCTCATTTTAGACCGTTTTCATCGGTTATACTCAAA-CACAAACTGAATATCCAATGAGAAGATACCATAATCAATAATGACTTTCTGGAGAACAGAAAATCATGTTGATTTTAAATTGACTAAAATTGATTTGGGGTTTATTTAGGGATGGATAATAAGG----AGAAAGCA--GAAAAACATTTTGATACATACCTCATTTATTACAGGCG-TGGATCAGCTAGGCATTGCATCTATTC---CACAGGGAATCCT-ATAAAACTCATTTACCAAGCAACTGAAGCTGGGAATACAAAGGT--------GATGTAAAAGAAAT---GAAAGTTGGAACGAATTCTACGAAGCA--TTAGGAAATTGCAAGAAAA-AAAAAAACTTATAATAAAGCAAGTGCTCTGAGTAGCCATTGAGCTTTGGAAAGTCATGGAAGCAGATCGAGCTGACATAGGATGGATGACTCCTGCAGAAAACTTCATGGAAACTG-AAAATCCTAGAGCTATTCAAACAATGGTGACAATGgtacagaatagaagttga--gtatgaacttcgagtcta--tacggctgagtttacaaattatgtctgtgggacacaataaacacatgactctgggtaagttatttatcatctctgca-ctgagttcc----tccctaagatgggaataggacccactgcatagaatctgtgacaatttaatggctaagcatacctaaa---gcatttagcag i canFam3.chr3 C 0 C 0 a score=1037423.000000 s hg38.chr4_KI270790v1_alt 12811 350 + 220246 agcaatgtgtataaagtacacatatatcaaatgttagctctaattattTCTGTGAAGACAAATATATTGCTTGTG--GAACACATGGGGAGA-TCGATGTTGTCTTTACAGACACTGCAG-TGCACTAGAAGAGCA-TATCAGTAATATCTTGTTCTTTAaataaattactagcattcatatggtatttatcctgaacagggaatatgataaagacttttatggattttattttcatttaattttaatgggattttgatgaatgta---ctattcccattttgcaggtgaggaaataaaggtaaagtgaatcttaagaagttgcttgagtccatagctgtag---------tgatagtgcccatatt s panTro4.chr4 21400325 350 + 193495092 agtaatgtgtataaagtacacatatatcaaatgttagctctaattattTCTGTGAAGACAAATATATTGCTTGTG--GAACACATGGGGAGA-TCGATGTTGTCTTTACAGACACTGCAG-TGCACTAGAAGAGCA-TATCAGTAATATCTTGTTCCTTAaataaattactagcattcatatggtatttatcctgaacagggaatatgataaagacttttatggattttattttcatttaattttaatgggattttgatgaatgta---ctattcccattttacaggtgaggaaataaaggtaaagtgaattttaagaagttgcttgagtccatagctgtag---------tgatagtgcccatatt i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21576475 353 + 198332218 agtaatgtgtataaagtacacatatatcaaatgttagctctaattattTCTATGAAGACAAATATATTGCTTGTG--GAACACATGGGGAGA-TCGATGTTGTCTTTACAGACACTGCAG-TGCACTAGAAGAGCC-TATCAGTAACATCTTGTTCTTTAaataaattactagcattcatatggtatttatcctgaacagggaatatgataaaggcttttatggattttattttcatttaattttaatgagattttgatgaatgtactgctattcccattttgcaggtgaggacataaaggtaaagtgaattttaagaagttggttgagtccatagctgtag---------tgatagcgcccatatt i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20188820 353 - 85365473 agtaatgtgtataaagtacacatatatcaaatgttagctctaattattTCTGTGAAGACAAATATATTGCTTGTG--GAACACATGGGGAGA-TCGATGTTGTCTTTACAGACACTGCAG-TGCACTAGAAGAGCA-TATCAGTAGTATCTTGTTCTTTAaataaattactagcattcatatggtatttatcctgagcagcgactatgataaaggcttttatggattttattttcattaaattttaatgagattttgatgaatgtactgatattcccattttgcaggtgaggaaataaaggtaaagtgaattttaagaagttgcttgagtccatagctgtag---------tgatagcgtccatatt i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16654216 354 + 184069350 agtaatgtgtacacagtacacatatatcaaatgttagctctaattattTCTGTGAAGACAAATACATTGCTTGTG--GAACACCCTGGGAGA-TCAATGTTGTCCTTACAAACACTGTAG-TGCCCTAGAAGAGCATTATCAGTAATATCTTGTTATTTAaataaattactagcattcatatggtatttatcatgaacagggaatatgataaaagcttttatggattttattttcatctaattttaatgagattttgatgcatgcactgctcttcccattttgcaggtgaggaaataaaggtaaagtgaattttaagaacttgcttgagttcatagctgtag---------tgatagcacccatatt i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20696442 354 + 189454096 agtaatgtgtacacagtacacatatatcaaatgttagctctaattattTCTGTGAAGACAAATATATTGCTTGTG--GAACACCCTGGGAGA-TCGATGTTGTCCTTACAAACACTGTAG-TGCCCTAGAAGAGCATTATCAGTAATATCTTGTTATTTAaataaattactagcattcatatggtatttatcatgaacagggaatatgataaaagcttttatggattttattttcatctaattttaatgagattttgatgcatgccctgctcttcccattttgcaggtgaggaaataaaggtaaagtgaattttaagaacttgcttgagttcatagctgtag---------tgatagcgcccatatt i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16290049 354 + 178775436 AGTAATGTGTACACAGTACACATATATCAAATGTTAGCTCTAATTATTTCTGTGAAGACAAATATATTGCTTGTG--GAACACCCTGGGAGA-TCGATGTTGTCCTTAAAAACACTGTAG-TGCCCTAGAAGAGCATTATCAGTAATATCttgttctttaaataaattactagCATTCATATGGTATTTATCATGAACAGGGAATATGATAAAAGCttttatggattttattttcatctaATTTTAATGAGATTTTGATGCATGCACTGCTcttcccattttgcaggtgaggaaataAAGGTAAAGTGAATTTTAAGAACTTGCTTGAGTTCATAGCTGTAG---------TGATAGCGCCCATATT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19777326 354 - 48547382 agtaatgtgtacacagtacacatatatcaaatgttagctctaattattTCTGTGAAGACAAATATATTGCTTGTG--GAACACACTGGGAGA-TCGATGTTGTCTTTACAAACACTGTAG-TGCCCTAGAAGAGCATTATCAGTAATATCTTGTTCTTTAaataaattactggcattcatatggtatttatcatgaacagggaatatgataaaagcttttatggattttattttcatctaattttaatgagatgttgatgcatgtactgctattcccattttgcaggtgaggaaataaaggtaaagtgaattttaagaacttgcttgagttcatagctgtag---------tgatagcacccatatg i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21124298 353 - 190850796 agtaatgcatatatggtacacatatataaaatattagctctaattattTCTGTGAAGACAAATACGTTGCTTGTG--GAAAACACTGGGAGA-TCAATGATGCCTTTACCAACACTACAA-TGCACTAGAAGAGCA-TATCAGTAATATCTCGTTCTTTAAATAaattactagcagttatatgatatttatcatgaacagagaatatgataaaggcttttatgtattttattttcatttaattttaatgagagtttgatacgtgtactgctattccctttttgcagatgagaaaataaaggtaaagtgaattttaagaacttgcttgagctcataactttag---------tgatagcgccCATATT i calJac3.chr3 C 0 I 3969 s mm10.chr5 49121527 289 + 151834684 AGTACATATTGTATAGTGTGGATATTTC---TTACAATTCTCACTATTTTTGCAAAGGCACATAGGCTGGCTATGATGCAGACACTGGGAAATTCTATCTTATCTTTAGGTATAACAAAGTTTCATTAGCATATTA-AGTGAATACTATATTATTC--------AACTTCTG----TCAGATACAATTT-TTTTAAATGGTGGAAATTAACAATGC------GAA---CACTTGTATTACACCTCAACAGGATTCCAGCAC--------CTCTT--------------------------------------------ATTGGCTTCATTTCACATCCCTGGTCTTTTTCATGATGGAACCCATATT i mm10.chr5 C 0 C 0 e canFam3.chr3 3716396 0 - 91889043 C a score=782485.000000 s hg38.chr4_KI270790v1_alt 13161 254 + 220246 gaaaaccaaatcatctg--ataagtccagttcctgaccactacattatggtgcctttctAAGGGATAATGTGACACAGGTATAGAATGGTGACAATTGTAGCCATAAGTGCCCTTTCCATTTTCAGCCCTCCAGTGCTTCATGAAGTACTGTGTTCATGAGGGGCTGCTGAATGACTGCCTGTAGGACACATCTTCCCAGAG--CAC---ACACCCTGGCAGATCACAGCCCAGGAGAACCACGAGCCCATCTGAAACCTC s panTro4.chr4 21400675 254 + 193495092 gaaaaccaaatcatctg--ataagtccagttcctgaccactacattatggtgcctttctAAGAGATAATGTGACACAGGTATAGAATGGTGACAATTGTAGCCATAAGTGCCCTTTCCATTTTCAGCCCTCCAGTGCTTCATGAAGTACTGTGTTCATGAGGGGCTGCTGAATGACTGCCTGTAGGACACATCTTCCCAGAG--CAC---ACTCCCTGGCAGATCACAGCCCAGGAGAACCATGAGCCCATCTGAAACCTC i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21576828 256 + 198332218 gaaaaccaaatcatctg--ataagtccaattcctgacaactacattatggtgcctttctAAGGGATAATGTGACACAGGTATAGAATGGTGACAATTGTAGCCATAAGTGCCCTTTCCATTTTCAGCCCTCCAGTGCTTCATGAAGTACTGTGTTCATGAGAGGCTGCTGAATGACTGCCTGTAGGACACATCTTCCCAGAGCCCAC---ACTCCCTGGCAGATCACAGCCCAGGAGAACCACTAGTCCATCTGAAACCTC i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20189173 254 - 85365473 gaaaaccaaatcatctg--ataagtccaattcctgacaactacattatggtgcctttctAAGGCATAATGTGACACAGGTATAGAATGGTGACAATTGCAGCCATAATTGCCCTTTCCATTTTCAGCCCTCCAGTGCTTCATGAAGTACTGTGTTCATGAGTGGCTGCTGAATGACTGCCTGTAGGACACATCTTCCCAGAG--CAC---GCTCCCTGGCAGATCACAGCCCAGGAGAACCACGAGCCCATCTGAAACCTC i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16654570 257 + 184069350 gaaaaccaaattatctg--ataagtccaattcctgacaaccacattatggtgcctttctAAGGCATAATGTGACACAGGTATAGAATGGTGACAATTGTAGCCATAAGTGCCCTTTCCATTTTCAGCCCTGCAGTGCTTCATGAAGTACTGTGTTCATGAGAGGCTGCTGAATGACTGCGTGTAGGACACATCTTCCCAGAG--CACACTACTCCCTGGCAGAGCATATCCCAGGAGAACAATGAGCCCATCTGAAGCCTC i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20696796 257 + 189454096 gaaaaccaaattatctg--ataagtccaattcctgacaaccacattatggtgcctttctAAGGCATAATGTGACACAGGTATAGAATGGTGACAATTGTAGCCATAAGTGCCCTTTCCATTTTCAGCCCTGCAGTGCTTCATGAAGTACTGTGTTCATGAGAGGCTGCTGAATGACTGCGTGTAGGACACATCTTCCCAGAG--CACACTACTCCCTGGCAGAGCATAGCCCAGGAGAACAATGAGCCCATCTGAAACCTC i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16290403 254 + 178775436 GAAAACCAAATTATCTG--ATAAGTTCAATTCCTGACAACCACATTATGGTGCCTTTCTAAGGCATAATGTGACACAGGTATAGAATGGTGACAATTGTAGCCATAAGTGCCCTTTCCATTTTCAGCCCTCCAGTGCTTCGTGAAGTACTGTGTTCACGAGAGGCTGCTGAATGACTGTGTGTAGGACACATCTTCCCAGAG--CAC---ACTCCCTGGCAGAGCACAGCCCAGGAGAACAATGAGCCCATCTGAAACCTC i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19777680 254 - 48547382 gaaaaccaaattatctg--ataagtccaattcctgacaactacattatggtgcctttctAAGGCATAATGTGACACAGGTATAGAATGGTGACAATTGTAGCCATAAGTGCCCTTTCCATTTTCAGCCCTGCAGTGCTTCATGAAGTACTGTGTTCATGAGAGGCTGCTGAATGACTGCCTGTAGGACACATCTTCCCAGAG--CAC---ACTCCCTGGCAGAGCACAGCCCAGGAGAACAATGAGCCCATCTGAAACCTC i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21128620 248 - 190850796 gaaAACCAAATTACCCA--ATAAGTCCAATTCCTGACAACTACATTATGATGCCTTTCTAAGGGATAATGCAACAC----ATAGAATGGTGACAATTGTAGCCGTAAGTGCCCTTTCCATTTCCGGCTCTCCAGTGCTTTAGGAACTACTGTGTTCAT--GTGGCTGCTGAATGACGGCCTGTGGGACACATTTTCCCAGAG--CAC---CCTCCCTGGCAGACAACAACTCAGGAGAACCATGAGCCCATCTGAAACCTC i calJac3.chr3 I 3969 C 0 s mm10.chr5 49121816 229 + 151834684 GGAAATGAGATCATCTGCTGTAAAGCCTCTT------------ATTACAATAACTTTTAGAGGC-TAATATGAGAACTGAATA----AGCGGGAATCCTAAGAACATCTTGTC-TTCCATTGTTA--CTCAGAGCGCTTCATTAAATGCCTACCCTGACAATGATTGTTAAATGGACATCTGCAAAGTACCTCTCCCAGAAG--CAC----CAGGATAACACAGGATAACCTAGCAGTAC------CTCATCTGAAACCTC i mm10.chr5 C 0 C 0 e canFam3.chr3 3716396 0 - 91889043 C a score=1282648.000000 s hg38.chr4_KI270790v1_alt 13415 374 + 220246 AGAAATAGCCCAGTGCCTGCAGGGGATGGTGCTGCAGCTTCAGACAGGACCTCCATGAGGGGCAGA------AGTTTGGTGAAGTATCCCTGATCACAGT--CAGCTTCACATCGTAGGGCTTTGAAACATGATGCTGTCAATTCATCTTGAATTGTTCAAGGTCAA-ACTC--AGGCATTCAATGCTGTATCGttcc----------------tctcc------------actcaattccatccctttc--cattccatctcattcca-ttttttcc-attcgctccactgtattcc-----attccattccactccact---------ctactccat----tcTGCGCAAACTTATTAACTACTTACTACACTACTTAGTCTGTAAG------CAAAAAGCAGCTGCTGCTCTAAAGATGAATAaaattaggcttaaca s panTro4.chr4 21400929 381 + 193495092 AGAAATAGCCCAGTGCCTGCAGGGGATGGTGCTGCAGCTTCAGACAGCACCTCCATGAGGGGCAGA------AGTTTGGTGAGGTATCCCTGATCACAGT--CAGGTTCACATCGTAGGGCTTTGAAACATGATGCTGTCAATTCATCTTGAATTGTTCAAGGTCAA-ACTCTTAGGCATTCAATGCTATATCGTTCC----------------TCtcc------------actcaattccatccctttc--cattccatctcattcca-ttttttcc-attcgctccactgtattcc-----attccattccactccacttcac----tctactccat----tcTGCGCAAACTTATTAACTACTTACTACACTACTTAGTCTGTAAG------CAAAAAGCAGCTGCTGCTCTAAAGATGAATAAAATTAGGCTTAACA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21577084 381 + 198332218 AGAAATAGCCCAGTGCCTGCAGGGGATGGTGCTGCAGCTTCAGACAGGACCTCCATGAGGGGCAGA------AGTTTGGTGAAGTATCCCTGATCAGAGT--CAGGTTCACATCGTAGGGCTCTGAAACATGATGCTGTCAATTCATCCTGAATTGTTCAAGGTCAA-ACTCTTAGGCATTGAATGCTATATcattcc----------------tctcc------------actcaattccatccctttc--cattccatctcattcca-ttttttcc-attcgctccactgtattcc-----attccattccactccacttcac----tctactccat----tcTGCTCAAACTTATTAACTACTTATTACACTGCTTAGTCTGTAAG------TAAGAAGCAGCTGCTGCTCTAAAGATGAATAAAATTAGGCTTAACA i ponAbe2.chr4 C 0 I 12 s nomLeu3.chr20 20189427 382 - 85365473 AGAAATAGCCCAGTGCCTGCAGGGGATGGTGCTGTAGCTTCAGACAGAACCTCCATGAGGGGCAGA------AGTGTGGTGAAGTATCCCTGATCAGAGT--CAGGTTCACATCGTAGGGCTCTGAAACATGATGCTGTTAATTCATCCCGAATTGTTCAAGGTCAA-ACTCTTAGGCATTCAACGCCATATcattcc----------------tctcc------------actcaattccatccctttc--cattccatctcattccatttttttcc-attcactccactgtattcc-----attccattccactccacttcac----tctactccat----tcTGCTCAAACTTATTAACTACTTACTACACTACTTAGTCTGTAAG------TAAGAAGCAGCTGCTGCTCTAAAGATGAATAAAATTAGGCTTAACA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16654827 386 + 184069350 AGAAATAGCCCAGTGCCTGCAGGGGATGGTGCTGCAGCTTCAGACAGGACCTCCATGAGGTGCAGA------AGTTTGGTGAAGTGCCCTTGATCAGAGT--CAGGTTCACATCGTGGGGCTCTGAAACATGATGCTGTCAATTCATCCCAAATTGTTCAAGGTCAA-ACTCTCAGGCATTCATCGCTATAccattcc----------------tctcc------------actcaattccatccctttc--cattccatctcattcca-ctttttcc-attcgctccactgtattctattccattccattccattccacttcac----tctactccat----tcTGCTCAAACGTATTAACTACTTACTACACTACTTAGTCTGTAAG------TAAGAAGCAGCTGCTGATATAAAGATGAATAAAATTAGGCTTAACA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20697053 386 + 189454096 AGAAATAGCCCAGTGCCTGCAGGGGATGGTGCTGCAGCTTCAGACAGGACCTCCATGAGGCGCAGA------AGTTTGGTGAAGTGCCCCTGATCAGAGT--CAGGTTCACATCGTGGGGCTCTGAAACATGATGCTGTCAATTCATCCCGAATTGTTCAAGGTCAA-ACTCTCAGGCATTCATCGCTATAccattcc----------------tctcc------------actcaattccatccctttc--cattccatctcattcca-ctttttcc-attcgctccactgtattctattccattccattccattccacttcac----tctactccat----tcTGCTCAAACGTATTAACTACTTACTACACTACTTAGTCTGTAAG------TAAGAAGCAGCTGCTGATATAAAGATGAATAAAATTAGGCTTAACA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16290657 381 + 178775436 AGAAACAGCCCAGTGCCTGCAGGGGATGGTGCTGCAGCTTCAGACAGGACCTCCATGAGGCGCAGA------AGTTTGGTGAAGTGCCCCTGATCAGAGT--CAGGTTCACATCGTGGGGCTCTGAAACATGATGCTGTCAATTCATCCCGAATTGTTCAAGGTCAA-ACTCTCAGGCATTCATCGCTATACCATTCC----------------TCTCC------------ACTCAATTCCATCCCtttc--cattccatctcattcca-ctttttcc-attcgctccactgtattct-----attccattccattccacttcAC----TCTACTCCAT----TCTGCTCAAACATATTAACTACTTACTACACTACTTAGTCTGTAAG------TAAGAAGCAGCTGCTgctataaagatgaataaaattaggCTTAACA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19777934 381 - 48547382 AGAAATAGCCCAGTGCCTGTAGGGGATGGTGCTGCAGCTTCAGACAGTACCTCCATGAGGGGCAGA------AGTTTGGTGAAGTGCCCCTGGTCACAGT--CAGGTTCACATCGTAGGGCTCTGAAACATGATGCTGTCAATTCATCCCGAACTGTTCAAGGTCAA-ACTCTTAGGcattcattgctataccattcc----------------tctcc------------actcaattccatccctttc--cattccatctcattcca-ctttttcc-attcgctccactgtattct-----attccattccattccacttcac----tctactccat----tcTGCTCAAACATATTAACTACTTACTACACTACTTAGTCTGTAAG------TAAGAAGCAGCTGCTGCTATAAAGATGAATAAAATTAGGCTTAACA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21128868 379 - 190850796 AGAAATAGCACAGTG-GTGCAGGGGATAGTGCTGCAGCTGTAGGCAGGACCTCCAGAAGGGGCAGA------AGTTTGGTGAAGTATCCCTGATCAGAGT--CAAGTTCACATTGTATGGCTCTGAAACATGATGCTGTCAATTCATCCCAAATTGTTTAAAGTCAA-ACTCTTAGGcattcaatgctatgccattcc----------------tctcc------------actcaattccatccctttc--catttcatcccattcca--tttttcc-atttgttccactgtactcc-----acttcattccacttcacttcac----tctactccat----tcTGCTCAAACTTATTAACTACTTACTACACTATTTAGTCTGTAAG------TAAGAAGcagctgctgctataaagatgaataaaattaggtctaata i calJac3.chr3 C 0 C 0 s mm10.chr5 49122045 378 + 151834684 AGAAAT--CCCAGGCCCAGTA-AGGACAATATTTCAGCTATCTGCAGGATCTATGTAA---GCAAAGCAACTAGTAAAGTTGTGTTCTCCTTTCTATGGC------TTCACA---------TTCAAATAATGGTGTATGTAATTCATCCAGAATTGATCAAGGTCAATAGTTTTAGACACCCAGTGCTATTTTACTCC----------------CTTCCTCCTATCCATTAATTCAAACCCAGCTCGCT---CATTCCATTCCAATCAA-CCCCTTCT-ACCTAATAC----TATTCT-----CCCTTAGCTCATTCAAAAGCACGAGGTCTATTTCTGACTATTTGATTAACCTTATTACCCACCTGTGCCA--GACTAACCTCTCAG------TAATAAGCAGCTGATTCACCAAAG----CTACAGCTTTGCTTGGAA i mm10.chr5 C 0 C 0 s canFam3.chr3 3716396 409 - 91889043 agAGATGGCCCCAAGATCACCAGAAATGGTACTGCACCTGCAGGCAGGATTGCAAATGAGGGCAGA------AGTTTGGTGAAGTATCCCTGTGCAGAGTCGCGGCTTCAC-TTTCACGGCCCTGAACCATGATGCCATTGGTTCATCTGAGGTTGATCCAAGTCAAAACTCTGACACATCCAACACTATGTCAGTCCAGTTattctattcccttcccc------------attc-actccattccattccacatttcatccatttcaa-ccttttctggtccatttcattctattcttttaaattccaatccactctatacccc----tctactctat----tctgatccatctcatt-ccaGCGTATTG-ACTACTTAACCCATGTGAATCTCTAAGAAGCAActgctgctacaaaaataaataaaattagaatttac- i canFam3.chr3 C 0 C 0 a score=-1965.000000 s hg38.chr4_KI270790v1_alt 13789 2 + 220246 ca s panTro4.chr4 21401310 2 + 193495092 CA i panTro4.chr4 C 0 C 0 s rheMac3.chr5 16655213 2 + 184069350 TG i rheMac3.chr5 C 0 I 10 s macFas5.chr5 20697439 2 + 189454096 TG i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16291038 2 + 178775436 TG i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19778315 2 - 48547382 TG i chlSab2.chr27 C 0 I 10 s calJac3.chr3 21129247 1 - 190850796 c- i calJac3.chr3 C 0 C 0 s mm10.chr5 49122423 1 + 151834684 -G i mm10.chr5 C 0 I 1 e canFam3.chr3 3716805 0 - 91889043 C e nomLeu3.chr20 20189809 0 - 85365473 C e ponAbe2.chr4 21577465 12 + 198332218 I a score=-11589.000000 s hg38.chr4_KI270790v1_alt 13791 19 + 220246 ggcttaaattaggcttaaa s panTro4.chr4 21401312 19 + 193495092 GGCTTAAATTAGGCTCAAA i panTro4.chr4 C 0 C 0 s nomLeu3.chr20 20189809 12 - 85365473 --CCTAAG--GAGCTC--- i nomLeu3.chr20 C 0 C 0 s macFas5.chr5 20697441 4 + 189454096 ----TAAG----------- i macFas5.chr5 C 0 I 6 s papAnu2.chr5 16291040 4 + 178775436 ----TAAG----------- i papAnu2.chr5 C 0 I 6 s calJac3.chr3 21129248 11 - 190850796 ---ttaag--gagctc--- i calJac3.chr3 C 0 C 0 s mm10.chr5 49122425 5 + 151834684 -----------CGCTC--- i mm10.chr5 I 1 C 0 s canFam3.chr3 3716805 13 - 91889043 -tctcaag--gagctc--- i canFam3.chr3 C 0 C 0 e chlSab2.chr27 19778317 10 - 48547382 I e rheMac3.chr5 16655215 10 + 184069350 I e ponAbe2.chr4 21577465 12 + 198332218 I a score=1685462.000000 s hg38.chr4_KI270790v1_alt 13810 517 + 220246 tcaggctGACCAAGTTCCATTCAGTAGGCAAGTTTAAAGAGCCAAAATC----------------------------------------------------T-----ATAA------TTTTAATACTTTTAGCTCTAAAGCTAGAATTGGACACAGTGTTCTTCCAATGT--ATAGAAAAGTCTACTCAGAAGGCTTTATTTTTGAGGACTTGGA-----GAGAGTTAAATAAGGTATTTTCGACATATGTTTTCAATGAAGCATGAAAACTAGAAAGGTGTGTTTCACTG-GCTGAGGATACTTCC-CGGTAAGACTCAAGGTCTACCATCTCAAATTAGAGT-TCTCTC-------AAAGGTGCTAAACTCT-ACTGAT-------TTTTTTATGAATCGCATGTTTCTATA-----TTTTTTTTGCCAAACTCTCCCTTCTGT-AAAGAACCATGATTTAAGCTAGCAACGACAAATGAAGCATAGTTACCCTCATTTGATTTGC-GGCATTTCAGACTCAACTATTTTTCTGAAACATCTATTTT-ATTTCAATAGAGAC----AAGAAGCCTGCTAGTTTCCTTAATCCTGCGTTTTAAAAACATACTTCTA s panTro4.chr4 21401331 517 + 193495092 TCAGGCTGACCAAGTTCCATTCAGTAGGCAAGTTTAAAGAGCCAAAATC----------------------------------------------------T-----ATAA------TTTTAATACTTTGAGCTCTAAAGCTAGAATTGGACACAGTGTTCTTCCAATGT--ATAGAAAAGTCTACTCAGAAGGCTTTATTTTTGAGGACTTGGA-----GAGAGTTAAATAAGGTATTTTCGACATATGTTTTCAATGAAGCATGAAAACTAGAAAGGTGTGTTTCACTG-GCTGAGGATACTTCC-CGGTAAGACTCAAGGTCTACCATCTCAAATTAGAGT-TCTCTC-------AAAGGTGCTAAACTCT-ATTGAT-------TTTTTTATGAATCGCATGTTTCTATA-----TTTTTTTTGCCAAACTCTCCCTTCTGT-AAAGAACCATGATTTAAGCTAGCAACGACAAATGAAGCATAGTTACCCTCATTTGATTTGC-GGCATTTCAGACTCAACTATTTTTCTGAAACATCTATTTT-ATTTCAATAGAGAC----AAGAAGGCTGCTAGTTTCCTTAATCCTGCGTTTTAAAAACATACTTCTA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21577477 516 + 198332218 TCAGGCTGACCAAGTTTCATTCAGCAGGCAAGTTTAAAGAGCCAAAATC----------------------------------------------------T-----ATAA------TTTTAATACTCTTAGCTCTAAAACTAGAATTGGCCACAGTGTTCTTCCAGTGT--ATAGAAAAGTCTACTCAGAAGGCTTTATTTTTGAGGACTTGGT-----GAGAGTTAAATAAGTTATTTTCGACATATGTTTTCAATGAAGCATGAAAACTAGAAAGGTGTGTTTTGCTG-GCTGAGGATACTTCC-TGGTAAGACTCAAGGTCTACCATCTCAAATTAGAGT-TCTCTC-------AAAGGTGCTAAATTCT-ACTGAT-------TTTTTTATGAATCGCATATTTCTATA------TTTTTTTGCCAAACTCTCCCTTCTGT-AAAGAACCATGATTTAAGCTAGCAATGACAAACGAAGCATAGTTACTCTCATTTTATTTGC-AGCATTTCAGACTCAACTATTTTTCTGAAACATCTATTTT-ATTTCAATAGAGAC----AAGAAGCCTGCTAGTTTCCTTAATCCTGGATTTTAAAAACATACTTCTA i ponAbe2.chr4 I 12 C 0 s nomLeu3.chr20 20189821 517 - 85365473 TCAGGCTGACCAAGTTCCATTCAGTAGGCAAGTTTAAAGAGCCAAAATC----------------------------------------------------T-----ATAC------TTTTAATACTCTTAGCTCTAAAACTAGAATTGGCCACAGTGTTCTTCCAGTGT--ATAGAAAAGTCTACTCAGAAGGCTTTATTTTTGAGGACTTGGT-----GAGAGTTAAATAAGGTATTTTTGACATATGTTTTCGATGAAGCATGAAAACTAGAAAGGTGTGTTTTGGTG-GCTGAGGATACTTCC-TGGTAAGACTCAAGGTCTACCATCTCAAATTAGAGT-CCTCTC-------AAAGGTGCTAAACTCT-ATTGAT-------TTTTTTATGAATCGCATATTTCTATA-----TTTTTTTTGCCAAACTCTCCCTTCTGT-AAAGAACCATGATTTAAGCTAGCAACGACAAATGAAGCATAGTTACCCTCATTTTATTTGC-AGCATTTCAGACTCAACTATTTTTCTGAAACATCGATTTT-ATTTCAGTAGAGAC----AAGAAGGCTGCTAGTTTCCTTAATCCTGCGTTTTAAAAACACACTTCTA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16655225 556 + 184069350 TCAGGCGGACCAAGTTCCATTTAATAAACAGATTTAAAGAGTCAAAATCGAATTTAGTAATTTACAACATATCTCAACTTGAGAAATAGAATACAT-----T-----ATAA------TTTTAATACTCTTAGCTCTAAAACTAGAATTGGCCACAGTTTTCTTCCAGTGT--ATAGAAAAGTCTACTCAGAAGACTTTATTTTTGAGGACTTGGT-----GAGAGTAAAATAAGATATTTTCGAGGTATGTTTTCAATGAAGCATGAAAACTAGAAAGGTGTGTTTTGCTG-GCTGAGGATACTTCC-TGGCAAGACTCAAGGTCTACCATCTCAAATTAGAGT-TCTCTC-------TAAGGTGCTAAACTCT-ATTGGTA------TTTTTTATGAATCACATATTTCTATA-------TTTTTTGCCAAACACTCCCATCTGT-AAAGTATCATGATTTCAGCTAGCAATGACAAAAGCAGCA--------GTCATTTTATTTGC-AGCATTTTAGACTCGACTATTTTTCTGAGACATCTATTTT-ATTTCAATAGAGAC-T--GAGAAGCCTGCTGGTTGCCTTAATCCTACATTTTAAAAACATACTTCTA i rheMac3.chr5 I 10 C 0 s macFas5.chr5 20697451 556 + 189454096 TCAGGCGGACCAAGTTCCATTCAATAAACAGATTTAAAGAGTCAAAATCGAATTTAGTAATTTACAACATATCTCAACTTGAGAAATAGAATACAT-----T-----ATAA------TTTTAATACTCTTAGCTCTAAAACTAGAATTGGCCACAGTTTTCTTCCAGTGT--ATAGAAAAGTCTACTCAGAAGACTTTATTTTTGAGGACTTGGT-----GAGAGTAAAATAAGATATTTTCGAGGTGTGTTTTCAATGAAGCATGAAAACTAGAAAGGTGTGTTTTGCTG-GCTGAGGATACTTCC-TGGCAAGACTCAAGGTCTACCATCTCAAATTAGAGT-TCTCTC-------TAAGGTGCTAAACTCT-ATTGGTA------TTTTTTATGAATCACATATTTCTATA-------TTTTTTGCCAAACACTCCCATCTGT-AAAGTATCATGATTTCAGCTAGCAATGACAAAAGCAGCA--------GTCATTTTATTTGC-AGCATTTTAGACTCGACTATTTTTCTGAGACATCTATTTT-ATTTCAATAGAGAC-T--GAGAAGCCTGCTGGTTGCCTTAATCCTACATTTTAAAAACATACTTCTA i macFas5.chr5 I 6 C 0 s papAnu2.chr5 16291050 564 + 178775436 TCAGGCGGACCAAGTTCCATTCAATAAACAGATTTAAAGAGTCAAAATCGAATTTAGTAATTTACAACATATCTCAACTTGAGAAATAGAATacac-----t-----ataa------ttttaaaactcttagcTCTAAAACTAGAATTGGCCACAGTGTTCTTCCAGTGT--ATAGAAAAGTCTACTCAGAAGACTTTATTTTTGAGGACTTGGT-----GAgagtaaaataagatattttcgAGGTATGTTTTCAATGAAGCATGAAAACTAGAAAGGTGTGTTTTGCTG-GCTGAGGATACTTCC-TGGCAAGACTCAAGGTCTACCATCTCAAATTAGAGT-TCTCTC-------TAAGGTGCTAAACTCT-ATTGGTA------TTTTTTATGAATcacatatttctata-------ttttttgccAAACACTCCCATCTGT-AAAGTATCATGATTTCAGCTAGCAATGACAAAAGAAGCACAGTCACCATCATTTTATTTGC-AGCATTTTAGACTCGACTATTTTTCTGAGAcatctatttt-atttcaatagagaC-T--GAGAAGCCTGCTGGTTGCCTTAatcctacattttaaaaacatacttcta i papAnu2.chr5 I 6 C 0 s chlSab2.chr27 19778327 564 - 48547382 TTAGGCGGACCAAGTTCCATTCAATAAACAGATTTAAAGAGTCAAAATCGAATTTAGTAATTTACAACATATCTCAACTTGAGAAATAGAATACAC-----T-----ATAA------TTTTAAAACTCTTAGCTCTAAAACTAGAATTGGCCACAGTGTTCTTCCAGTGT--ATAGAAAAGTCTGCTCAGAAGACTTTATTTTTGAGGACTTGGT-----GAGAGTAAAATAAGATATTTTCGAGGTATGTTTTCAATGAAGCACGAAAACTAGAAAGGTGTGTTTTGCTG-GCTGAGGATACTTCC-TGGCAAGACTCAAGGTCTACCATCTCAAATTAGAGT-TCTCTC-------TAAGGTGCTAAACTCT-ATTGGTA------TTTTTTATGAATCGCATATTTCTATA-------TTTTTTGCCAAACACTCCCATCTGT-AAAGTATCATGATTTCAGCTAGCAATGACAAAAGAAGCACAGTCACCATCATTTTATTTGC-AGCATTTTAGACTCGACTATTTTTCTGAGACATCTATTTT-ATTTCAATAGAGAC-T--GAGAAGCCTGCTGGTTGCCTTAATCCTACATTTTAAAAACATACTTCTA i chlSab2.chr27 I 10 C 0 s calJac3.chr3 21129259 574 - 190850796 tcaggctGACCAAGTTCAATTCAGTAGACAGGTTTAAAGAGTCAAAATCTAATTTAGTAATTTACAACATATCTCAACTTGAGAAATAGAATACAT-----C-----ATAAAAACATTTTTAATACTCTTAGCACTAAAACTAGAATTGGCCACAGTGTTCTTCCAGTGG--GTAGAAAAGT---CTCAGAAGACTTTATTTTTGAGGACCTGGT-----GAGAGTAAAATAAAATATGTTCAAGGTATGTTTTCGATGAAGCATGAAAACTAGAAAAGTGGGTTTTCCTG-GCTGAAGATACTCCC-TGGAAAGACTCAAGGTCTACCATCTCAAATTAGAGT-TTTCTT-------GAAGGTGCTAAACTCT-ATTGGTA------TTTTTTATGAATCACATATTTCTACATATATTTCTTTTTGTCAAACTCTCCCTTTTGT-AAAGTACCAGGGCTTCAGCTAGCAATGACAAATGAAGCATAGCTAC-ATCATTTTATTTGC-AGAATTTTAGACTCAACTATTTTTCTGAAACATCTTTTTT-ATTTCAATAGAGACTT--GAGAAGCCTGCTAGTTTCCTTAATCCTATATTTTAAAAACATATTTCTA i calJac3.chr3 C 0 I 4544 s mm10.chr5 49122430 516 + 151834684 TTGAGCTGACCAGGTTTCATTCAACAGATAGCTTTATGGTGGGAAAAAC--TCTTAGTAATTCCCAACA------------AGGGCCAGAATGTAT-----TCAATACTAG------TTTGAGTCCTCTTAGTTCTATA-CTGTACTTGGCTACTAACTATTTCTAGCTTTAACTGACAAGT-TACCCAGAAGCCAACATTCTTTAGTAGTTGAT-----GTAGTTAAAGTAGG---TTTTCAATGTATATATCTAGTGAACCTTGACAACTAGAAAATTG-ATTAACCAT-GCAGAAGATACTGTT-CAGCAA--------ATCTAGCTCATCAAATCAGAGTGTCTCTC-CCCACAGAAAGTGCAA----------GGTA------CAGTTCCTGAA---CATTTCCTTATC-----ATTTTCTTG-CAGTCATTCCTGAAGATAAAAATGTCATGAACTCAGCTAGCCAGAACAAATATGGAATAAATAGTATGATGCCTTTGG---ATATCTAAGACTCAACTACTTCTCAAACCCGTTTTTCCT--TTTCAGTAGAGAA------------------------TTCTCTTATGTTAAAAATACATACTTCTA i mm10.chr5 C 0 C 0 s canFam3.chr3 3716818 573 - 91889043 tcaggcggatgaagCTTCATTTAAT----AGGTTTACAAAGCCAAAAACTAATTGAGTAATTCACAACATA-CCCAATTTGTGAAATGGAGTACATGAGAAA-----GTAA------TTTAAATACACACGGCTATAAAACCAGATTTGGTCACAAGGTTCTTTCTATTA--CTAGATAAATCTACTCAAAGGACTTCATTCTTGGGGACTTCATTCATGAGGAAAAAAATAAGATGTTTTCAGAGTACACTTCCAGTGAACCATGAAAACTGGAAGGGGGTATTTTGCTATGTTGGTGAAACCTCCAAAATAATATTCAGAGTC-------TCAAATCAGAGT-TCTCTTTTCTTCTGAAGGTGTGACACCATCACTGATAGATTTTTTTTTAATGGATCATGTTTTTCTATA-------ATTTTTGCCAATTCCTCCTTTCTGC-CAAGT-CCATGACCTCTGTTATTTAGGACAAATGGAGTGTAAACACCATCATTTCATTTGTAAGCATTTT--------CTACTTTTCTGAAACATCCTCTTTGGTGTTAATAGAGAT-TTCAGAAACCCCATTAGCTTTCTTAACCCTACATTTACAAACAATACTTCCA i canFam3.chr3 C 0 C 0 a score=1395075.000000 s hg38.chr4_KI270790v1_alt 14327 512 + 220246 TATGAAT----TGGAGAAATGAAATGTGCTCCATAGTTTATGTTATTCCTTACTTT-TGGAATGTATCCTAATCTCAGGATTCTTCATTACTCTGACTACATATTATATTTATTTCCATCCTAAGGTttttcaaagataggcatgtggattatctagatcaacaatccctaaa----ggg-cttttaaaatgtcaattcctgggccctactccattcctgaaaatcaaaatttt--gaagca--gaaatct--gagtctCCAAATCATCTCCCTTGGTATATCTCACCTTCTATCTCCCTTTGC-AATCAC-AAGACAGTGACCAGGTCCAGTGATGATATCATGGGCTGTCTGTCACCTGCCTGACAGTGATTCCTGGAGACTCTCACCCAAACAAACTCTCACAGAAACTAGGCAACGTAAGAGACAGGAAGGTTCAGCTGGGGAGGCTTCATTGCGTCAGGAATGCCTTATATAATTCCAGAAGGTCAACAAGAGAAAACCAGGCCAACAGAGCATAAATGTCAACA s panTro4.chr4 21401848 512 + 193495092 TATGAAT----TGGAGAAATGAAATGTGCTCCATAGTTTATGTTATTCCTTATTTT-TGGAATGTATCCTAATCTCAGGATTCTTCATTGCTCTGACTACATATTATGTTTATTTCCATCCTAAGGTttttcaaagataggcatgtggattatctagatcaacaatccctaaa----ggg-cttttaaaatgtcaattcctggaccctactccattcctgaaaatcaaaatttt--gaagca--gaaatct--gagtctCCAAATCATCTCCCTTGGTATATCTCACCTTCTATCTCCCTTTGC-AATCAC-AAGACAGTGACCAGGTCTAGTGATGATATCATGGGCTGTCTGTCACCTGCCTGACAGTGATTCCTGGAGACTCTTACCCGAACAAACTCTCACAGAAACTAGGCAACGTAAGAGAAAGGAAGGTTCAGCTGGGGAGGCTTCATTGCGTCAGGAATGCCTTATTTAATTCCAGAAGGTCAACAAGAGAAAACCAGGCCAACAGAGCATAAATGTCAACA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21577993 513 + 198332218 TATGAAT----TGGAGAAATGAAATGTGCTCCATAGTTTATGTTATTCCTTATTTT-TGGAATGTATCCTAATCTCAGGATTCTTCATTGCTCTGACTACATATTATGTTTATTTCCATCCTaatgtttttcaaagataggcttgtggattatctagatcaacaatccctaaa----ggg-cctttaaaatgtcaattcctgggccctactccattcctgaaaatcaaaatttt--gaagca--gaaaccccagagtctCCAGATTATCTCCCTCGGTATATCTCACCTTCTATCTCCCTTTGC-AATCAC-AAAGCAGTGACCAGGTCCAGTGATGATATCATGGGCTGTCTGTCACCTGCCTGACAGTGATTCCTGGAGACTCTCACCCAAACAAACTCTCACAGAAACTAGGCAACATAAGAGAAAGGAAGGTTCAGCTGGGGAGGCTTCATTGCATCAGGAATGCC-TATTTAATTCCAGAAGGTCAACAAGAGAAAACCAGGCCAACAGAGCATAAATGTCAACA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20190338 513 - 85365473 TATGAAT----TGGAGAAATGAAAGGTGCTCCATAGTTTATGCTATTCCTTATTTT-CGAAATGTATCCTAATCTCAGGATTCTTCATTGCTCTGACTACATATTATATTTA-TTCCATCCTAAGGTTTTTCAAAGATAGGCATGTGGATTATCTAGatcaacaatccctaaa----ggg-cttttaaaatgtcaattcctgggccctactccattcctgaaaatcaaaatttt--gaagca--gaaacctcagAGTCTCCAAATTATCTCCCTCGGTATATCTCACCTTCTATCTCCCTTTGC-AATCAC-AAGACAGTGACCAGGTCCAGTGCTGATATCATGGGCTGTCTGTCACCCGCCTGACAGTGATTCCTGGAGACTCTCACCCAAACAAACTCTCACAGAAACTAGGCAACGTGAGAGAAAGGAAGGTTCAGCTGGGGAGGCTTCATTGCGTCAGGAATGCCTTATTTAATTCCAGAAGGTCAACAAGAGAAAACCAGGCCAACAGAGCATAAATGTCAACA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16655781 493 + 184069350 TATGAAT----TGGAGAAATGAAATGTGCTCCATAGTTTATGTTGTTCCTTATTTT-TGGAATGTATCCTAATCTCAGGGTTCCTCATTGCTCTAACTGCATACTATGTTTATTTCCATCCTAA----------------------GGATTATCTAGAAGAGCAATTcctaaa----ggg-cttttaaaatgtcaattcctggaccctactccattcctgaAAATCAAAATTTT--GAAGCA--GAAACCTCAGAGTCTCCAAGTAATCTGCCTCAGTAAACCTCATCCTCTATCTCCCTTTAC-AATCACTGAGACAGTGACCAGGTCCAGTGATGATGTCATGGGCTCTCCATTGCCTGCCTGACAATGATTCCTGGAGACTCTCACCCAAACAAGCTCTCACAGAAACCAGACAACGTGAGAAAAAGGAAGGTTCAGCTGGGGAGGCTTTATTGGGTCAGAAATGCCTTACTTAATTCCAGAAGGTCAACAAGAGAAAGCCAGGTCAACAGAACATAAATGTCAACA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20698007 493 + 189454096 TATGAAT----TGGAGAAATGAAATGTGCTCCATAGTTTATGTTGTTCCTTATTTT-TGGAATGTATCCTAATCTCAGGGTTCCTCATTGCTCTAACTGCATACTATGTTTATTTCCATCCTAA----------------------GGATTATCTAGAAGAGCAATTCCTAAA----GGG-CTTTTAAAATGTCAATTCCTGGACCCTACTCCATTCCTGAAAATCAAAATTTT--GAAGCA--GAAACCTCAGAGTCTCCAAGTAATCTGCCTCAGTAAACCTCATCCTCTATCTCCCTTTAC-AATCACTGAGACAGTGACCAGGTCCAGTGATGATGTCATGGGCTCTCCATTGCCTGCCTGACAATGATTCCTGGAGACTCTCACCCAAACAAGCTCTCACAGAAACCAGACAACGTGAGAAAAAGGAAGGTTCAGCTGGGGAGGCTTTATTGGGTCAGAAATGCCTTACTTAATTCCAGAAGGTCAACAAGAGAAAGCCAGGTCAACAGAACATAAATGTCAACA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16291614 515 + 178775436 TATGAAT----TGGAGAAATGAAATGTGCTCCATAGTTTATGTTGTTCCTTATATT-TGGAATGTATCCTAATCTCAGGGTTCCTCATTGCTCTAACTGCATACTATGTTTATTTTCATCCTAAGGTTTATCAAAGATAGGCATATGGATTATCTAGAAGAGCCATTCCTAAA----Gcg-cttttaaaatgtcaattcctGGACCCTACTCCATTCCTGAAAATCAAAAATTT--GAAGCA--GAAACCTCAGAGTCTCCAAGTAATCTCCCTCGGTAAACCTCATCCTCTATCTCCCTTTAC-AATCACTGAGACAGTGACCAGGTCCAGTGATGATGTCATGGGCTCTCCATTGCCTGCCTGACAATGATTCCTGGAGACTCTCACCCAAACAAGCTCTCACAGAAACCAGACAATGTGAGAAAAAGGAAGGTTCATCTGGGGAGGCTTTATTGGGTCAGAAATGCCTTACTTAATTCCAGAAGGTCAACAAGAGAAAGCCAGGTCAACAGAACATAAATGTCAACA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19778891 515 - 48547382 TATGAAT----TGGAGAAATGAAATGTGCACCATAGTTTATGTTGTTCCTTATTTT-TGGAATGTATCCTTATCTCAGGGTTCCTCATTGCTCTAACTGCATACTATGTTTATTTCCATCCTAAGGTTTATCAAAGATAGGCATGTGGATTATCTAGAAGAGCAATTCCTAAA----GCG-CTTTTAAAATGTCAATTCCTGGACCCTACTCCATTCCTGAAAATCAAAATTTT--GAAGCA--GAAACCTCCGAGTCTCCAAGTAATCTCCCTCGGTAAACCTCATCCTCTATCTCCCTTTAC-AATCACTGAGACAGTGACCAGGTCCAGTGATGATGTCATGGGCTCTCCACTGCCTGCCTGACAATGATTCCTGGAGACTCTCACCCAAACAAGCTCTCACAGAAACCAGGCAACGTGAGAAAAAGGAAGGTTCATCTGGGGAGGCTTTATTGGGTCAGAAATGTCTTACTTAATTCCAGAAGGTCAACAAGAGAAAGCCAGGTCAACAGAACATAAATGTCAACA i chlSab2.chr27 C 0 C 0 s mm10.chr5 49122946 502 + 151834684 TACAAAT----TAAATAA---AAATACATTTAACATTTAATGTTGTTGTTTACCTA-GGGAATGCATTGTAGTTTCTAAGCTCTCTACTGCCATGAATACAAAGTTAATTTGCTTCTGTTTTGGAATTTTTCAAAGGCAAGTCTGTAGGATAGCTAAATCAGTAATCTCTGGAGTATGTA-TTTCCTTGGTGTAGATTCGTGACTCCTACTCTGCTTAGAAAGATAAAA-------GAGGCATTGTAACTG--AAGTCCCCAGATCACCTCTCTACAGAAGTTTT-TCCTCT---TTCCTTTCT-AGGCACTAAGGTCATAGCAAGATTCAAGAATGG-ATGATTGGCTTTC----ATCTTCCTGGCAATAAATTCTGGATACTATTACCTAAGCAAGCTCTTATATAAATAAGGTACTGGGATATCAATGAAGTTTTCTCTGGGGAAGGCTTATTGGCTTAAGAATGATTTATATAATGTCTACAGTTCAGAAAGAGAGAACTTGGCACACTGAGTTTTTATATTTACA i mm10.chr5 C 0 I 649 s canFam3.chr3 3717391 507 - 91889043 TATGAATTGACTGAAGAAACAAAACGAGCTCCAT-TTTTATGTTGTTCCTTACTTTGGGGGATGTAGTCCAATCTTGGAGTCCCTCATTGCTCTGATGACATATTATCTTTGCCTCCATTCTAGAGTTTCTCCAAGGTAGGTCTGTGTATTATCTAAATTGATaatcactggg----gtgttttttaaaatgtctattcatagatcctatctcatttctaagaacctgaatctttggagcca--gtaccctcagagtccccaaataattt--ctcagtgattctcactctgcag---cctttgcaaaccgctgCAGCAGTGATCAAATCCAGAGATAGTACCAGGAGCTTCCTTTAACCTTTCTAACAGAGATTTCTTGGCACTCTCACCTAAATAAGCCCTCAC--AAATTAGACACTGTGAGTGCAAAGAAGGCTCAGGTGTGGAAG--TCATTGATTGGTAAAAGCTTCA-TTAATTCTAAAAAGTC---AAGAAAAAACCTGGC---CAGAGCATAAATGCTAATA i canFam3.chr3 C 0 C 0 e calJac3.chr3 21129833 4544 - 190850796 I a score=24389.000000 s hg38.chr4_KI270790v1_alt 14839 11 + 220246 TTTATGGGC--CC- s panTro4.chr4 21402360 11 + 193495092 TTTATGGGC--CC- i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21578506 11 + 198332218 TTTATGGGC--CC- i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20190851 11 - 85365473 TTTATGGGC--CC- i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16656274 11 + 184069350 TCTGTGGGC--CC- i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20698500 11 + 189454096 TCTGTGGGC--CC- i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16292129 11 + 178775436 TCTGTGGGC--CC- i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19779406 11 - 48547382 TCTATGGGC--CC- i chlSab2.chr27 C 0 C 0 s canFam3.chr3 3717898 14 - 91889043 CCCATGGGCAGCCT i canFam3.chr3 C 0 C 0 e mm10.chr5 49123448 649 + 151834684 I e calJac3.chr3 21129833 4544 - 190850796 I a score=870610.000000 s hg38.chr4_KI270790v1_alt 14850 258 + 220246 AGCTGGTGTCCTGCTGAGGCTACGTATTTGAGATTTTGCAAGCCAGGCAAT----------ATTGCAAGTTA----ACATGCTGTATAGATTCTGATTCT--GCAGGAAAATTCTCCTTCAGTGTTGCATAGTTGCATTTACTAATTCTGCTTTCTTAGTATTTTGTGTATTTGTTTTACTTTGTATTTTAAGTTTCAGCTAAACAAATGACAAGTAACCAAAATACGAATGAAA-GGACTATTTCCTATGcagctactgtgt--------------------------------------------------------------------ttacatatatta s panTro4.chr4 21402371 258 + 193495092 AGCTGGTGTCCTGCTGAGGCTACGTATTTGAGATTTTGCAAGCCAGGCAAT----------ATTGCAAGTTA----ACATGCTGTATAGATTCTGATTCT--GCAGGAAAATTCTCCTTCATTGTTGCATAGTTGCATTTACTAATTCTGCTTTCTTAGTATTTGGTGTGTTTGTTTTACTTTGTATTTTAAGTTTCAGCTAAACAAATGACAAGTAACCAAAATACGAATGAAA-GGACTATTTCCTATGcagctactgtgt--------------------------------------------------------------------ttacatatatta i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21578517 258 + 198332218 AGCTGGTGCCCTGCTGAGGCTACGTATTTGAGATTTTGCAAGCCAGGCAAT----------ACTGCAAGTTA----ACATGCTGCATAGATTCTGATTCT--GCAGGAAAATTCTCCTTCAGTGTTGCATAGTTACATTTACTAATTCTGCTTTCTTAGTATTTTGTGTGTTTGTTTTACTTTGTATTTTAAGTTTCAGCTAAACAAATGACAAGTAACCAAAATACGAATGAAA-GGACTATTTCCTATGcagctactgtgt--------------------------------------------------------------------ttacatatatta i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20190862 258 - 85365473 AGCTGGTGCCCTGCTGAGGCTACATATTTGAGATTTTGCAAGCCAGGCAAT----------ATTGCAAGTGA----ACATGCTGTATAGATTCTGATTCT--GCAGGAAAATTCTCCTTCAGTATTGCATAGTTGCATTTACTAATTCTGCTTTCTTAGTATTTTGTGTGTTTGTTTTACTTTGTATTTTAACTTTCAGCTAAACAAATGACAAGTAACCAAAAAACGAATGAAA-GGACTATTTCCTATGcagctactgtgt--------------------------------------------------------------------ttacatatatta i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16656285 258 + 184069350 AGCTGGTGCCCTGCTGAGGCTACATAGTTGAGATTTTGCAAACCAGGCAAT----------ATTGCAAGTTA----ATATGCTGTATAAATTCTGATTCC--GCAGGAAAATTCTCCTTCAGTGTTGCATAGTTGCATTTACTAATTCTGCTTTCTTAGTATTTTGTGTGTTTGTTTTACTTTGTATTTTAAGTTTCAGCTAAACAAATGACAAGTAACCAAAATATGAACGAAA-Ggagtatttcctatgcacctactctat--------------------------------------------------------------------gtacatatatta i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20698511 258 + 189454096 AGCTGGTGCCCTGCTGAGGCTACATAGTTGAGATTTTGCAAGCCAGGCAAT----------ATTGCAAGTTA----ATATGCTGTATAAATTCTGATTCC--GCAGGAAAATTCTCCTTCAGTGTTGCATAGTTGCATTTACTAATTCTGCTTTCTTAGTATTTTGTGTGTTTGTTTTACTTTGTATTTTAAGTTTCAGCTAAACAAATGACAAGTAACCAAAATATGAACGAAA-GGAGTATTTCCTATGCACCTACTCTAT--------------------------------------------------------------------GTACATATATTA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16292140 326 + 178775436 AGCTGGTGCCCTGCTGAGGCGACATAGTTGAGATTTTGCAAGCCAGGCAAT----------ATTGCAAGTTA----ATATGCAGTATAAATTCCGATTCT--GCAGGAAAATTCTCCTTCAGTGTTGCATAGTTGCATTTACTAATTCTGCTTTCTTagtattttgtgtgtttgttttactttgtattttaagtTTCAGCTAAACAAATGACAAGTAACCAAAATATGAACGAAA-GGAATATTTCCTATGCACCTACTGTgcatatattacctcatttaatatggttaacatatatatattaatataatatatatattataacatatataatatatatatta i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19779417 258 - 48547382 AGCTGGTGCCCTGCTGAGGCTACATATTTGAGATTTTGCAAGCCAGGCAAT----------ATTGCAAGTTA----ATATGCTGTATAAATTCTGATTCT--GCAGGAAAATTCTCCTTCAGTGTTGCATAGTTGCATTTACTAATTCTGCTTTCTTAGTATTTTGTGTGTTTGTTTTACTTTGTATTTTAAGTTTCAGCTAAACAAATGACAAGTAAACAAAATATGAATGAAA-GGAATATTTCCTATGCACCTACTGTAT--------------------------------------------------------------------GTACATATATTA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21134377 258 - 190850796 agTTGGTTCTCTGCTGAGGCTGTGTATTTGAGATTTTGCAAGCAAGGCACT----------ATTGCAAGTTA----ACATGCTGTACAGATTCTGATTCT--GAAGGAAAATTCTCCTTCAATGTTGCAGAGTTGCATTTACTAATTCTGCTTTCTTAGTATTTTGTGTGTTTGTTTTACTTTGTACTTTAAGTTTCAGCTAAATAAATGACAAATAACCAAAATATGAATGAAA-AGAATATTTCCTATGCACCTACTGTGT--------------------------------------------------------------------TTACATATACTA i calJac3.chr3 I 4544 C 0 s canFam3.chr3 3717912 274 - 91889043 GGTGGGTGTCCTGGGGAGGCTGGGCATTTGAGATTTTGCGAGCTAGGCAATATGATATTACATTATATATCATCATACGTGTTCTGCAGATTCTGATACCAGAAAAGGAAACTGTTATTCGACACTGCATATCTGCATTTGCTAATTCTGTTTTCTTAGTATTTT-TTTGTTTGTTTTACTTTGTATCTCAAATTTGGTTTCAACAAATAACAAGTGACTAAGAGATGAAAAAAAGGGAATACACTCTATGCATCTACTATGA--------------------------------------------------------------------ttacatatatta i canFam3.chr3 C 0 C 0 e mm10.chr5 49123448 649 + 151834684 I a score=526996.000000 s hg38.chr4_KI270790v1_alt 15108 184 + 220246 cctcatttaatatggttaacacgtca-gggcacggtggctcaagcctgtaatctcagcactttgggaggccaaggcaggcagatcgcttgaggccaggacttcgagaacagtctggccaacattgcaaaaccctgtctttactaaaaatac-aaaaaata-tagctgggtgtggtggtgcgtatctg s panTro4.chr4 21402629 184 + 193495092 cctcatttaatatggttaacacgtca-gggcacggtggctcaagcctgtaatctcagcactttgggaggccaaggcaggcagatcgcttgaggccaggactttgagaccagtctggccaacattgcaaaaccctgtctttactaaaaatac-aaaaaata-tagctgggtgtggtggcgcgtatctg i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21578775 184 + 198332218 cctcatttaatatggttaacaagtca-gggcacggtggctcaagcctgtaatctcagcactttgggaggccaaggcaggcagatcgtttgaggccaggaattcgagaccagtctggccaacattgcaaaaccctgtctctactaaaaatac-aaaaaaca-tagctgggtgtggtggcgcatatctg i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20191120 185 - 85365473 cctcatttaatatggttaacatgtcaggggcatggtggctcaagcctgtaatctcagcactttgggaggccaaggtgggcagatcgcttgaggccaggacttcgagaccagtctggccaacattgcaaaaccctgtctctactaaaaatac-aaaaaata-tagctggatgtggtggcgcatatctg i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16656543 185 + 184069350 cctcatttaatatggttaacatggca-gggcatggtggctcatgcctgtaatttcagcactttgggagcccaaggtgggcagatcacttgaggccaggacttcgagaccagtctggctgacattgcaaaaccctgcctctactaaaaatacaaaaaaata-tagccgggtatggtggcgcatgtttg i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20698769 185 + 189454096 CCTCATTTAATATGGTTAACATggca-gggcatggtggctcatgcctgtaatctcagcactttgggagcccaaggtgggcagatcacttgaggccaggacttcgagaccagtctggctgacattgcaaaaccctgcctctactaaaaatacaaaaaaata-tagccgggtatggtggcgcatgtttg i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16292466 185 + 178775436 cctcatttaatatGGTTAACATGgga-gggcacggtggctcatgcctgtaatctcagcactttgggagcccaaggtgggcagatcacttgaagccaggactttgagaccagtctggccgacattgcaaaaccctgcctctactaaaaatacaaaaaaata-tagctgggtatggtggcacatgtttg i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19779675 185 - 48547382 CCTCATTTAATATGGTTAACATggcg-gggcacagtggctcatgcctgtaatctcagcactttgggagtccaaggtgggcagatcacttgaggccaggacttcgagaccagtctggccgacattgtaaaaccctgcctctactaaaaatacaaaaaaata-tagctgggtatggtggtgcatgtttg i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21134635 186 - 190850796 TCTCATTTAATATGCTTAATATggca-gagtacggtggctcaggcctataatctcggctctttgggaggacaaggcaggtagatctcttgaggcaaggacttcaagaccagcatggccaacatggcaaaaccctgtctatactaaaaatacaaaaaaacattagcagggtgtggtggtacatgtctg i calJac3.chr3 C 0 C 0 e mm10.chr5 49123448 649 + 151834684 I e canFam3.chr3 3718186 0 - 91889043 C a score=1769177.000000 s hg38.chr4_KI270790v1_alt 15292 601 + 220246 taatctcagctactcagaaggctgagaaatgagaatcgcttgaactcaggaaacaagggttgcagtgagccgagatcacgccactgcactccagcctggctgacaggatgagactctgtttcaaaaaaaaaaaaa-----------------------gtaaca------ctttg---agaataggttct---------tattatctctatatt---aaaaaataaagcaaacaaaacgaacagtggataatta--cttacccaaagttaataaatcttagcattggatcttgagccctgtttctttcaaagccaaaatctatattttattctattacactctgc---tgtttcC----AAAACAGGCCAAATA---------ATTTCTACCCCTCAAACATTTACCAGTGGCAGAAAACAACTATGAAATCACACTGAGGCCATAAAGTAATAAGAGGAAATTTCTATAAAGCCACACAACCATCTCATTTCCCTGTGGCCACACTTTACATTCATTCAATGAAGAATCAGGATCTACACTG--CACCACACATTGGGGGCTGAATAAGCACAGACATACCTGGTAATCTTTGATTT--CTCAGACTCTACAGGAGATCAAGGTTCTGGCAAATGTAGAAGTACCTCAAACCTTTCT-------------------GGTCATTTT s panTro4.chr4 21402813 605 + 193495092 taatctcagctactcagaaggctgagaaacgagaatcgcttgaactcaggaaacaagggttgcagtgagccgagatcacgccactgcactccagcctggctgacagggtgagactctgtttcaaaaaaaaaaaaa---------------------aagtaaca------ctttg---agaagaggttct---------tattatctctatatt---aaaaaataaagcaaacaaaatgaacagtggataattatccttacccaaagttaataaatctcagcattggatcttgagccctgtttctttcaaagccaaaatctatattttattctattacactctgc---tgtttcC----AAAACAGGCCAAATA---------ATTTCTACCTCTCAAACATTTACCAGTGGCAGAAAACAACTATGAAATCACACTGAGGCCATAAAGTAATAAGAGGAAATTTCTATAAAGCCACACAACCATCTCATTTCGTTGTGGCCACACTTTACATTCATTCAATGAAGAATCAGGATCTACGCTG--CACCACACATTGGGGGCTGAATAAGCACAGACATACCTGGTAATCTTTGATTT--CTCAAACTCTACAGGAGATCAAGGTTCTGGCAAATGTAGAAGTACCTCAAACCTTTCT-------------------GGTCATTTT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21578959 597 + 198332218 taatctcagctactcagaaggctgagaaactagaatcgcttaaactcaggagacgagggttgcagtgagccgagatcacgccactgcactccagcctgggtgacagggtgaga--ctgtttcaaaaacaaaaa-------------------------gtaaca------ctttg---agaagaggttct---------tattatctctatatt---aaaaaataaagcaaacaaaatgaacagtggataatta--tttacccaaagttaataaatctcagcattggatcttgagccttctttctttcaaagccaaaatctatattttattctattacactctgc---tgtttcC----AAAACAGGCCAGATA---------ATTTCTACCCCTCAAACATTTACCAGTGGCAGAAAACAACTATGAAATCACACTAAGGCCATAAAGTAATAAGAGGAAATTTCTATAAAGCCACAAAACCATCTCATTTCCTTGTGGCGACACTTTATATTCATTCAATGAAGAATCAGGATCTACACTG--CACCACACATCAGGGGCTGAATAGGCACAGACATACCTGGTAATCTTTGATTT--CTCCAACTCTACAATAGATCAAGGTTCTGGCAAATGTAGAAGTACCTCAAACATTTCT-------------------GGTCATTTT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20191305 599 - 85365473 taatctcagctactcagaaggctgagaaacgagaatcgcttgaactcaggagatgagggttgcagtgagccgagatcacgccactgcactccagcctgggtgacagggtaagactctgtttcaaaaaaaaaaa-------------------------gtaaca------ctttg---agaagaggttct---------tattatctctatatt---aaaaaataaagcaaacaaaatgaacagtggataatta--tttacccaaagttaataaatctcagcattggatcttgagccctgtttctttcaaagccaaaatctatgttttattctattacactctgc---tgtttcC----AAAACAGGCCAAATA---------ATTTCTACCCCTCAAACATTTACCAGTGGCAGAAAACAACTATGAAATCACACTGGGGCCATAAAGTAATAGGAGGAAATTTCTATAAAGCCACACAACCGTCTCATTTCCTTATGGCCACACTTTATATTCATTCAATGAAGAATCAGGATCTACACTG--CACCACACATGGGGGGCTGAATAGGCACAGACGTATCTGGTAATCTTTGATTT--CTCCAACTCTACAGTAGATCAAGGTTCTGGCAAATGTAGAAGTACCTCAAACCTTTCT-------------------GGTCATTTT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16656728 613 + 184069350 taatctcagctactcagaaggctgagaaatgagaatcacttgaactcaggagatgagggttgcagtgagccaagatcacatcactgcactccagcatgggtgacagagtgagactgtgtctcaaaaagaaaaaaa-----------aaaagaaagaaaggaaaa------ttttg---agaagaggttct---------tattatctctatatt---aaaaaataaagcaaacaaaatgaacagtggataatta--tttacccaaagttaataaatctcagcattggatattgagccctgtgtcactcaaagtaaaaatctatgttttattctataatactctgc---tgtttcC----AAAACAGGCCAAATA---------ATTTCTACCCCTCAAACATTTACTACTGGAAGAAAACAACTATGAAATCACACAGAGGCCATAAAGTAATAAGAGCAAATTTCTATAAAGCCACACAACCATCATATTTCCTTGTGGCCACACGTTATATTCATTCAATGAAGAGTCAGGATCTACACTG--CACCACTCGTCGGGGGCTGAATAGGCACAGATATACCTGGTAATCTTTGATTT--CTCAAACTCTACAGTAGATCAAGGTTCTGGCAAATGCAGAAGTAACTCAAACCTTTCC-------------------GGTCATTTT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20698954 616 + 189454096 taatctcagctactcagaaggctgagaaatgagaatcgcttgaactcaggagatgagggttgcagtgagccaagatcacatcactgcactccagcctgggtgacagagtgagactgtgtctcaaaaagaaaaaaa-----------aaaagaaagaaaGGAACA------TTTTGAGAAGAAGAGGTTCT---------TATTATCTCTATATT---AAAAAATAAAGCAAACAAAATGAACAGTGGATAATTA--TTTACCCAAAGTTAATAAATCTCAGCATTGGATATTGAGCCCTGTGTCACTCAAAGTAAAAATCTATGTTTTATTCTATAATACTCTGC---TGTTTCC----AAAACAGGCCAAATA---------ATTTCTACCCCTGAAACATTTACTACTGGAAGAAAACAACTATGAAATCACACAGAGGCCATAAAGTAATAAGAGCAAATTTCTATAAAGCCACACAACCATCATATTTCCTTGTGGCCACACGTTATATTCATTCAATGAAGAGTCAGGATCTACACTG--CACCACTCATCGGGGGCTGAATAGGCACAGATATACCTGGTAATCTTTGATTT--CTCAAACTCTACAGTAGATCAAGGTTCTGGCAAATGCAGAAGTAACTCAAACCTTTCC-------------------GGTCATTTT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16292651 627 + 178775436 taatctcagctactcagaaggctaagaaacgagacttgcttgaactcagaagacgagggttgcagtgagccgagattacatcactgcactccagcctgggtgacagagtgagactctgtctcaaaaaaaaaaaaaaaaaaaaaaacaaaaaaaagaaaggaaca------tttTGAGAAGAAGAGGTTCT---------TATTatctctatatt---aaaaaataaagcaaacaaaatgaacagtggataatta--tttacccaaagTTAATAAATCTCAGCATTGGATATTGAGCCCTGTGTCACTCAAAGTAAAAATCTATGTTTTATTCTATAACACTCTGC---TGTTTCC----AAAACGGGCCAAATA---------ATTTCTACCCCTCAAACATttactactggaagaaaacaactATGAAATCACACAGAGGCCATAAAGTAATAAGAGCAAATTTCTATAAAGCCACACAACCATCTCATTTCCTTGTGGCCACACGTTATATTCATTCAATGAAGAGTCAGGATCTACACTG--CACCACTCATCGGGGGCTGAATAGGCACAGATATACCTGGTAATCTTTGATTT--CTCAAACTCTACAGTAGATCAAGGTTCTGGCAAATGCAGAAGTAACTCAAACCTTTCC-------------------GGTCATTTT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19779860 630 - 48547382 taatctcagctactcagaaggctgagaaatgagaatcgcttgaactcaggagacgagggttgcagtgagccgagatcacatcaccgcactctagcctgggtgacagagtgagactctgtctcaaaaaaaaaaaaaaaaag------aaaaaaaagaaaGGAACA------TTTTGAGAAGAAGAGGTTCTTATTATCTCTATTATCTCTATATT---AAAAAATAAAGCAAACAAAATGAACAGTGGATAATTA--TTTACCCAAAGTTAATAAATCTCAGCATTGGATCTTGAGCCCTGTGTCATTCAAAGTCAAAATCTATGTTTTATTCTATTACACTCTGC---TGTTTCC----AAAACAGGCCAAATA---------ATTTCTACCCCTCAAACATTTACCACTGGAAGAAAACAACTATGAAATCACACTGAGGCCATAAAGTAATAAGAGGAAATTTCTATAAAGCCACAAAACCATCTCATTTCCTTGCAGCCACACGTTATATTCATTCAATGAAGAGTCAGGATCTACACTG--CACCACTCATGGGGGGCTGAATAGGCACAGATATACTTGGTAATCTTTGATTT--CTCAAACTCTACATTAGATCAAGGTTCTGGCAAAGGCAGAAGTAACTCAAACCTTTCC-------------------GGTCATTTT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21134821 601 - 190850796 gaatcccagctacttggaaggttgaggcacaagaattgcttgaactcaggagatggaggttgcagtaagacaagattgcaccactgcactccagacttggtgacagagtcagactATCACACACACACAAAA--------------------------GTAACACATTTGCTTTG---AGAAGAGGTTCT---------TATTATCTCTGTATTAAAAAAAAATAAAGCAAACA-----AATAGTGGATAATTA--TTTACCCAAAGTTAATAAATCTCAGCATTGGATCTTCAGCCCTCTTTCATTCAAAGCAAAAATCTATGTTTTATTCTATTACACTCTGC---TGTTTCT----AAAACAAGCCAAATA---------ACTTCTACCCCTCAAACATTTACCACTGAAAGGAGACAACTATGAAATCACACTGAGGATGTAAAATATTAAGAGGAAATTTCTATAAAGCCACCCAATCAACTCATTTGCTTGTGTTCACACTTTATAGTCATTCAGTGAAGAATCAAGCTCTACACTG--CGCCACTCACGGGGGGCTGAATAAAAACCGACAGGATT-TTATTCTTTGATTT--CCCAAACTCTACAGGAGATCAAGGTTCTGGCAAATGCAAAAGTGACACAAACCTTTCT-------------------TGTCACTTT i calJac3.chr3 C 0 C 0 s canFam3.chr3 3718186 499 - 91889043 ttatctcatttaatctg-------------------------------------------tgcagc-----------------------------------------------------------------------------------------------atg------ctatg-------gatattgt---------ta--atccctatatt---ttaaaa-aaatcaaacaaagcttaaag-----aagtg--aatattcaaagtcaATAAATCTCAGCACTGGTTCTTGAGTCCTATTATAATCAAAGT-AAAATCAATCAATTAATCAATAAATCTGTGCATTTTTTTCCTGTTACCATGAGCAACATGATTGCTTCTATTTCTTCCCCTCGACTATCTACTCCTTAAAGAAAACAACTATGAACTTATACTGAGGTCACATCGTAAAGACAGAGAATTTCAACAAAGTCACACAACAGTCTCATTTCCTTGTGG------TGTCTATCCATTCAGTG-------AGGGTCTGCTCTGAACACAACCAGTTGAGGATGAAAATGGCACAGATATTTCAGGTAATCTTTCATTTTCTCCAAACTTTACAGCCAGTCGAGGTTCTGGCTAGTGTAAAAACTACTTAACATTTTCTTCTTTCAAATATGTATTACTATTATTTT i canFam3.chr3 C 0 I 132 e mm10.chr5 49123448 649 + 151834684 I a score=1341353.000000 s hg38.chr4_KI270790v1_alt 15893 449 + 220246 C-AAACTTAAATTCTGTATAC---AGTACA------AGCATACTGTTGAGGGTGGC-TTTAA---TGTGT-AAAACTGCTGCTTATGGATAGTGGCGATGGGTGATGTTGCCACACCTCATCACTGCATGCCATTTAATACCTTTTATCCATTAAAGTTCAGGCCACCACATCAGCACTACAATA-TTTTAAATCCTTATATCTGAAAGTACAGGAACCTCTCCACTTTTCTGTGTGTATAATGTAGCCCTTGGCACATTGCGGaaaacaaaaacaaag-aaaaaatacaaaaaaaTATCACCATCTG-TACtgggttgaatagtgttccttaaaatttcgtgtctacttggaatttgtgaatataaccttatttggaaatagagtctttgcaaatataatcaagtcaagattaagtcatactgtattagagagggccctgaacccaatctgacttgtgtccttatc s panTro4.chr4 21403418 449 + 193495092 C-AAACTTAAATTCTGTATAC---AGTACA------AGCATACTGTTGAGGGTGGC-TTTAA---TGTGT-AAAACTGCTGCTTACGGATAGTGGCGATGGGTGATGTTGCCACACCTCATCACCGCATGCCATTTAGTACCTTTTATCCATTAAAGTTCAGGCCACCACATCAGCACTACGATA-TTTTAAATCCTTATATCTGAAAGTACAGGAACCTCTCCATTTTTCTGTGTGTATAATGTAGCCCTTGGCACATTGCAGAAAACAAAAACAAAG-AAAAAATACAAAAAAAAATCACCATCTG-TACtgggttgaatagtgttccttaaaatttcgtgtctacttggaatttgtgaatataaccttatttggaaatagagtctttgcaaatataatcaagtcaagattaagtcatactgtattagagagggccctgaacccaatctgacttgtgtccttatc i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21579556 451 + 198332218 C-AAACTTAAATTCTGTATAC---AGTACA------AGCATACTGTTGAGGGTGGC-TTTAATGTTGTGT-AAAACTGCAGCTTATGGATAGTGGTGATGGATGAAGTTGCCACACCCCATCACTGCATGCCATTCAGTACCTTTTATCCATTAAAGTTCAGGCTACCACATCAGCACTAGGATA-TTTTAAATCCTTATATCTGAAAGTACAGGAATCTCTCCACTCTTCTGTGTGTGTAGTGTAGCCCTTGGCACATTGCAGAAAACAAAAACAAAG-AAAAAATAC-AAAAAATATCACCATCTG-TACtgggttgaatagtgttcctcaaaatttcgtgtctacttggaatttgtgaatataatcttatttggaaatagagtctttgcaaatataatcaagacaagattaagtcatactgtattagagagggccctgaacccaatctgacttgtgtccttatc i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20191904 452 - 85365473 CAAAACTTAAATTCTGTATAC---AGTACA------AGCATACTGTTGAGGGTGGC-TTTAATGTTGTGT-AAAACTGCAGCTTATGGATAACGGTGATGGGTGAAGTTGCCACACCTCATCACTGCATGCCATTCAGTACCTTTTATCCATTAAAGTTCAGGCTACCACATCAGCACTAGGATA-TTTTAAATCCTTATATCTGAAAGCACAGGAACCTCTCCACTTTTCTGTGTGTGTAGTGTAGCCCTTGGCACCTTGCAGaaaacaaaaacaaag-aaaaaatac-aaaaaaTATCACCATCTG-TACGgggttgaatagtattccttaaaattttgtgtctacttggaatttgtgaatataaccttatttggaaatagagtctttgcaaatataatcaagtcaagattaggtcatactgtattagagagggccctgaacccaatctgacttgtgtccttatc i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16657341 455 + 184069350 C-AAACTTAAATTCTGTACAC---AATACA------AGCATACTGTTGAGGGTGGCTTTTAATGTGATGT-AAAACTGCAGCTTATGGATAGTGATGATGGGTGATGTTGCCGCACTCCATCGCTGCATGCCATTCAGTACCTTTTATCCATTAAAGTTCAGGCTACCACATCAGCACTAGGATACTTTTAAATCCTTATATCTGAAAGTACAGAAACCTCTCCACTTTTCTGTGTGTGTAGTGTAGCCCTTGGCACATTGCAGAAAACAAAAACCAAGAAAAAAATAC-AAAAAATATCACCATCtgttagtgggttgaatagcgtcccttaaaatttcatgtctacttggaatttgtgaatataaccttagttggaaatagagtctttgcaaatataatcaagtcaagattaagtcatactgtgttagagagggccctgaagccaatttgacttgtgtccttatc i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20699570 455 + 189454096 C-AAACTTAAATTCTGTACAC---AATACA------AGCATACTGTTGAGGGTGGCTTTTAATGTGATGT-AAAACTGCAGCTTATGGATAGTGGTGATGGGTGATGTTGCCGCACTCCATCGCTGCATGCCATTCAGTACCTTTTATCCATTAAAGTTCAGGCTACCACATCAGCACTAGGATACTTTTAAATCCTTATATCTGAAAGTACAGAAACCTCTCTACTTTTCTGTGTGTGTAGTGTAGCCCTTGGCACATTGCAGAAAACAAAAACCAAGAAAAAAATAC-AAAAAATATCACCATCtgttactgggttgaatagcgtcccttaaaatttcatgtctacttggaatttgtgaatataaccttagttggaaatagagtctttgcaaatataatcaagtcaagattaagtcatactgtgttagagagggccctgaagccaatttgacttgtgtccttatc i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16293278 453 + 178775436 C-AAACTTAAATTCTGTACAC---AATACA------AGCATACTGTTGAGGGTGGCTTTTAATGTGATGT-AAAACTGCAGCttatggatagtggtgatgggtGATGTTGCCACACCCCATCAGTGCATGCCATTCAGTACCTTTTATCGATTAAAATTCAGGCTACCACATCAGCACTAGGATACTTTTAAATCCTTATATCTGAAAGTACAGAAACCTCTctacttttctgtgtgtgtagTGTAGCCCTTGGCACactgcagaaaacaaaaaccaag-aaaaaatac-aaaaaatatcacCATCTGTTACTGGGTTGAATAGCGTCCCTTAAAATTTCATGTCTACTTGGAATTTGTGAATATAACCTTagttggaaatagagtctttgcaaaTATAATCAAGTCAAGATTAAGTCATACTG-GTTAGAGAGGGCCCTGAAGCCAATTTGACTTGTGTCCTTATC i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19780490 453 - 48547382 C-AAACTTAAATTCTGTACAC---AGTACA------AGCATACTGTTGAGGGTGGCTTTTAATGTGACGT-AAAACTGTAGCTTATGGATAGTGGTCATGGGTGATGTTGCCACACCCCATTGCTGCATGCCATTCAGTACCTTTTATCCATTAAAGTTCAGGCTACCACATCAACACTAGGATACTTTTAAATCCTTATATCTGAAAGTACAGAAACCTCTCTACTTTTCTTTGTGTGTAGTGTAGCCCTTGGCACATTGCAGAAAACAAAAACCAAG-AAAAAATAC-AAAAAGTATCACCATCTG-TACtgggttgaatagcgtcccttaaaatttcatgtcgacttggaatttgtgaatataatcttatttggaaatagagtctttgcaaatataatcaagtcaagattaagtcatactgtgttagagagggccctgaagccaatttgacttgtgtccttatc i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21135422 444 - 190850796 C-AATCTTAAATTCTGTACAC---AGTATA------AGCATACTGTTGAGAGTGGCTTTTAATGTGGTGT-AAAACTGCAGTTTATGGATAGTGGTGATGGGTGATCTTGCCACACCTCATCACTGTGTGCCATTCAGTACCATTTACGCATTAAAGATGATGCTACCATGTCAGCACTAGGGTACTTTTAAACCCTAATATCTGAAAGTACAGGAAGCTCTCAACTTTTGTGTGTGTGTAGGGTAGCCCTCGGCACATTGCACAAAACAAAAACAAAC-A---------AAAAAATAACACCATCTG-CACTGGGTTGAATAGTGTTACTTAAAATTTCA-GTCTACTTGGAATTTGTgaatataaacttatctagaaatagagtctttgcagccataatcaagtcaagattaagtcatactgtattagagagagctctgaatccagcctgacttttgctcttctc i calJac3.chr3 C 0 C 0 s canFam3.chr3 3718817 312 - 91889043 C-ATACTTGTATTTTATACATCAAAGCCCATTGGACAGAACCCTGTTGAAGGTGCT-TTTAACATGTTATCAAAGCAGCAGCTTACGGGAAGTGGA-------------GCCACATCACATTGCTGCACATCATTAAGCATCGT------------------GGTAGTAAAAGGGCAGTAGGATA-TTTTAGA-CTTTATATCCTAAAGTACAGAAGCTCATCAAC--TTGTGTGTGTTTGGCACAGCTCTTGGCATACTGCAG-------AAACAGAC-A---------AACACAGATCACCACCTG-TATtgggctgaatagcgtcccctaaaa-ttcaggcctactcagaacctgtga---------------------------------------------------------------------------------------------------ccttatt i canFam3.chr3 I 132 I 92 e mm10.chr5 49123448 649 + 151834684 I a score=62159.000000 s hg38.chr4_KI270790v1_alt 16342 23 + 220246 atccttacaagaagagggaaatt s panTro4.chr4 21403867 23 + 193495092 atccttacaagaagagggaaatt i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21580007 20 + 198332218 atccttac---aagagggaaatt i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20192356 20 - 85365473 atccttac---aagaggcaaatt i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16657796 23 + 184069350 atccttacaagaagagggaaatt i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20700025 23 + 189454096 atccttacaagaagagggaaatt i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16293731 23 + 178775436 ATTCTTACAAGAAGAGGGAAATT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19780943 23 - 48547382 atccttataagaagagggaaatt i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21135866 23 - 190850796 atccttataagaagagggaaatt i calJac3.chr3 C 0 I 526 e mm10.chr5 49123448 649 + 151834684 I e canFam3.chr3 3719129 92 - 91889043 I a score=696624.000000 s hg38.chr4_KI270790v1_alt 16365 306 + 220246 gacctggcgcagtagctcacgcctgtaatccctgaactttgggaggccaaggcggccggatcacgaggtcaggagatcgagaccatcctggtcaacatgatgaaaccccatctctactaaaaatacaagaattagctgggcttggtggcacatgcctgtaatcccagctactcgggaggctgagtcagaagaatagcttgaaccagggaggcggaggttgaagtaagccgagattgcaccactgtactccagcctaggtgacagagtgagattccgtctcaaaaaaaaaaa-aaaaaaaaaaaaaaa s panTro4.chr4 21403890 303 + 193495092 gacctggcgcagtagctcacgcctgtaatccctgaactttgggaggccaaggtggccggatcacgaggtcaggagatcgagaccatcctggtcaacatgatgaaaccccatctctactaaaaatacaagaattagctgggcttggtggcacatgcctgtaatcccagctactcgggaggctgagtcagaagaatagcttgaaccagggagtcggaggttgaagtaagccgagattgcaccactgtactcccgcctaggtgacagagtgagattccgtctcaaaaaaaaaaa-aaaaaaaaaaaa--- i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21580027 300 + 198332218 gacctggcacagtagctcacgcctgtaatcccagaactttgggaggctgaggtgggcggatcacgaggtcaggagatcaagaccatcctggccaacatgatgaaaccccatctctactaaaaatacaagaattagctgggcttggtggcacatgcctgtaatcccagctactcgggaggctgaggcaggagaatagcttgaactagggagtcggaggttgaagtcagccgagattgcaccactgtaccccaccctgggtgacagagcgagattccgtctcaaaaaaagaaa-aaaaaaaaa------ i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20192376 298 - 85365473 gacctggcgcagaagctcacgcctgtaatcccagaactttgggaggccaaggtgggcggatcacaaggtcaggagatcgagaccatcctggccaacatgatgaaaccccatctctactaaaaatacaagaattagctgggcttggtggcacatgcctgtaatcccagctactcgggaggctgaggcaggagaatagcttgaaccaggaagtcggaggttgaagcgagccgagattgcaccactgtactccagcctgggcgacagagcgagattccatctcaaaaaaagaaa-aaaaaaa-------- i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16657819 304 + 184069350 gacctggcacagtagctcacgcctgtaatcccagaactttgggaggctgaggtgggcagatcatgaggtcaggagatcgagaccatcctggccaacatagtgaaaccccatctctactaaaagtacaagaattagctgggcttggtggcacatgcctgtaatcccagcatctcagggggctgaggcaggagaatagcttgaactagggagtcagaggttgcagtgagctgagattgcaccactgtattccagtctgggcaacagagtgagattccgtctcagaaaaagaaa-aaaaaaaaaaaaa-- i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20700048 300 + 189454096 gacctggcacagtagctcacgcctgtaatcccagaactttgggaggctgaggtgggcagatcatgaggtcaggagatcgagaccatcctggccaacatagtgaaaccccatctctactaaaagtacaagaattagctgggcttggtggcacatgcctgtaatcccagcatctcaggaggctgaggcaggagaatagcttgaactagggagtcagaggttgcagtgagctgagattgcaccactgtattccagtctgggcaacagagtgagattccgtctcaaaaaaag-----aaaaaaaaaaaa-- i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16293754 305 + 178775436 GAcctggtgcagtagctcacgcctgtaatcccagaactttgggaggctgagatgggcagatcatgaggtcaggagatcgagaccatcctggccaacatggtgaaaccccatctctactaaaagtacaagaattagctgggcttggtggcacatgcctgtaatcccagcatctcaggaggctgaggcaggagaatagcttgaactagggagtcagaggttgcagtgagctgagattgcaccactgtattccagtctgggcaacagagtgagattccgtctcaaaaaaagaaagaaagaaaaaaaaa-- i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19780966 304 - 48547382 gatctggcacagtagctcgcgcctgtaatcccagaactttgggaggctgaggtgggcggatcacgaggtcaggaaatcgagaccatgctggccaacatggtgaaaccccatctctcctaaaagtacaagaatttgctgggtttggtggcacatgcctgtaatcccagcatctcaggaggctgaggcaggagaatagcttgaactagggagtcagaggttgcagtgagccgagattgcagcactgtactccagtctgggcaacagagtgagattccgtctcaaacaaagaaa-aaaaaaaaaaaaa-- i chlSab2.chr27 C 0 C 0 e mm10.chr5 49123448 649 + 151834684 I e calJac3.chr3 21135889 526 - 190850796 I e canFam3.chr3 3719129 92 - 91889043 I a score=636057.000000 s hg38.chr4_KI270790v1_alt 16671 230 + 220246 aagacaagggaaatttggagatggagatacagataatgaaaagaagggcatgaacagatggaggcagaga--ttggagcgatgcatttataagcctaagaatgctaaggattaccaccaaccatcagaagctagaagagat-aagaaaggagacttctacagcatgtttagaagtagta-tgtcccaccaacaccttga-tcttagacttctagtctccagaagtgtcagatagt s panTro4.chr4 21404193 228 + 193495092 --gacaagggaaatttggagatggagatacagataatgaaaagaagggcatgaacagatggaggcagaga--ttggagcgatgcatttataagcctaagaatgctaaggattaccaccaaccatcagaagctagaagagat-aagaaaggagacttctacagcatgtttagaagtagta-tgtcccaccaacaccttga-tcttagacttctagtctccagaagtgtcagacagt i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21580327 228 + 198332218 --gacaagggaaatttggacatggagatacagataatgaaaagaagggcatgaacagatggaggaagaga--ttggagtgatgcatttataagcctaagaatgctaaggattaccaccaaccaccagaagctagaagagat-aagaaaggagtcttctacagcatgtttagaagtagta-tgtcccaccaacaccttga-tcttagacttctagtctccacaagtgtcagacagt i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20192674 228 - 85365473 --gacaagggaaatttggacatggagatacagataacgaaaagaagggcatgaacagatggaggcagaga--ttggagcgatgcatttataagcctaagaatgctaaggattaccaccaaccaccagaagctggaagagat-aagaaaggagtcttccatagcacgtttagaagtagta-tgtcccaccaacaccttga-tcttagacttctagtctccggaaatgtcagacagt i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16658123 228 + 184069350 --gacgagggaaatttggacatggagatacagataatgaaaagaaaggcatgaacagatggaggcagaga--ttggagcgatgcatttataagcctaagaatgctatggattgccaccaaccaccagaagttagaagagac-aagaaaggagccttctacagcgtgtttagaagtagta-cgtcccaccaacaccttga-tcttagatttctagtccccagaactgtcagccagt i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20700348 228 + 189454096 --gacgagggaaatttggacatggagatacagataatgaaaagaaaggcatgaacagatggaggcagaga--ttggagcgatgcatttataagcctaagaatgctatggattgccaccaaccaccagaagttagaagagac-aagaaaggagccttctacagcgtgtttagaagtagta-cgtcccaccaacaccttga-tcttagatttctagtccccagaactgtcagacagt i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16294059 228 + 178775436 --gacgagggaaatttggacatggagatacaaataatgaaaagaaaagcatgaacagatggaggcagaga--ttggagcgaTGCATTTATAAGCCTAAGAATGCTAAGGATTGCCACCAACCACCAGAAGTTAGAAGAGAC-AAGAAAGGAGCCTTCTACAGTGTGTTTAGAAGCAGTA-CGTCccaccaacaccttga-tcttagatttcTAGTCCCCAGAACTGTCAGAcagt i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19781270 229 - 48547382 --gacgagggaaatttggacatggagatacagataatgaaaagaaaggcatgaacagatggaggcagaga--ttggagcgatgcatttataagcctaagaatgctaaggattgccaccaaccaccagaagttagaagagataaagaaaggagccttctacagcgtgtttagaagtagta-cgtcccaccaacaccttga-tcttagatttctagtccccagaactgtcagacagt i chlSab2.chr27 C 0 C 0 s canFam3.chr3 3719221 229 - 91889043 aggaagagggaagttgagacactgaaatagagataaagaaaagctggccaagagaagaccaaggcaaagagtttggggtgatgcatttacaagccaaagaatgccaagattttccatcaaccaccagaagctagaagagcc------aggaatcttccacagagccttcagaggtagaagggccccacaaacaccttgatttttggatattttgtttccagaactgtaagacaat i canFam3.chr3 I 92 C 0 e mm10.chr5 49123448 649 + 151834684 I e calJac3.chr3 21135889 526 - 190850796 I a score=2136030.000000 s hg38.chr4_KI270790v1_alt 16901 656 + 220246 aaatttctattgttttaaaccacacagtttgtgatactttgttatggtcaccctaggaaactaacacaCCATCCATAAATATCCATGTACCACATGCAAGGTGCTATGCTCAGCGTTGAGAATATGGAACAATGGAGAGGTATACCTGGAATCTGGGACACGTATCAGTGTCTATAGACATAGAGGAGGAAGGTAAAAGAGTGTTCCACTTCATTTTAACTCCAGTGTGTTGCTTCTTTTCTAAGGAGCCACAGACAATGACTTCTCATCCTCCTCTTCCTCATTATTCCTTGGCTTACAAGCTAATGCATAC-ATCATGGGGTTCCCAGTATTTCCTTTTCCCCCCAATATTTTATGCCCCATGCTTGTGTTTATATTGTGATATAATAAAATGGCACGAAGTAGAAACACACCCTTCACATGGAGCACACATTACCCAGTGGTTTTATTAAGACTTGTGTTTCGGCATCTGAGCTATGTGAAATCTCACTCAAGGCTCTGTAATGCCGGTATGTTCTCTATATGAATGTGGCACGACTGAAAACATAAAACTGTTATCACAAAACTGTTACATACATTGTAAAACAA---ACAGCTCTCtgatgtggt---ttggctctgtgtccccacccaaatctcatctcaaattgtaatccctgtgt s panTro4.chr4 21404421 656 + 193495092 aaatttctgttgttttaaaccacacagtttgtgacactttgttatggccaccctaggaaactaatacaCCATCCATAAATATCCATGTACCACATGCAAGGTGCTATGCTCAGCGTTGAGAATATGGAACAATGGAGAGGTATACCTGGAATCTGGGACACGTATCAGTGTCTATAGACATAGAGGAGGAAGGTAAAAGAGTGTTCCTCTTCATTTTAACTCCAGTGTGTTGCTTCTTTTCTAAGGAGCCACAGACAATGACTTCTCATCCTCCTCTTCCTCATTATTCCTTGGCTTACAAGCTAATGCATAC-ATCATGGGGTTCCCAGTATTTCTTTTTCCCCCCAATATTTTATGCCCCATACTTGTGTTTATATTGTGATATAATAAAATGGCACGAAGTAGAAACACACCCTTCACATGGAGCACACATTACCCAGTGGTTTTATTAAGACTTGTGTTTCGGCATCTGAGCTATGTGAAATCTCACTCAAGGCTCTGTAATGCCGGTATGTTCTCTATATGAATGTGGCACGACTGAAAACATAAAACTGTTATCACAAAACTGTTACATACATTGTAAAACAA---ACAGCTCTCtgatgtggt---ttggctctgtgtccccacccaaatctcatctcaaattgtaatccccgtgt i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21580555 655 + 198332218 aaatttctattgttttaagccacacagtttgtgatactttgttatggccaccctaggaaactaatacaCCATCCATAAATATCCATGTACCACATGCAAGATGCCATGCTTAGCGTTGAGAATATGGAACAATGGAGATGTATACCTGCAATCT-GGACACATATCAGTGTCTATAGACATAGAGGAGGAAGGTAAAAGAGTGTTCCACTTCATTTTAACTCCAGTGTATTGCTTCTCTTCTAAAGAGCCACAGACAATGGCTTCTCATCCTCCTCTTCCTTGTTATTCCTTGGCTTACAAGCTAATGCATAC-ATCATGGGGTTCCCAGTATTTCCTTTTCCCCCAAATATTTTATGCCCCATACTTGTGTTTATATTGTGATATAATAAAATGGCACAAAGTAGAAACACACCCTTCACATGGAGCACACATTACCCAGTGGTTTTATTAAGACTTATGTTCTGGCATCTGAGCTATGTGAAATCTCACTCAAGGCTCTATAATGCCGGTATGTTCTCTCTATGAATGTGGCATGACTGAAAACATAAAACTGTTATCACAAAACTGTTACATACATTGTAAAACAA---ACAGCTCTCtaatgtggt---ttggctctgtgtccccacccaaatctcatctcaaattgtaatccccatgt i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20192902 655 - 85365473 aaatttctattgttttaagccacagagtttgtgatactttgttatggccaccctaggaaactaatacaCCACCCATAAATATCCATGTACCACATGCAAGTTgccatgctcagcgttgagaatatggaacaatggagaggtatgcctggtatctgggacacatatcagtgtctacagacatacaggaggaaggcaaaagagtgttccacttcatttttactccagtgtattgcttttcttctaaagagCCACAGACAATGACTTCTCATCCTCCGCTTCCTCATTATTCCTTGACTTACAAGCTAATGCATAC-ATCATGGGGTTCCCAGTATTTCC-TTTCCCCCCAATATTTTATGCCCCATATTTGTGTTTATACTGTGATATAATAAAATGGCACGAAGTAGAAACACACCCTTCGCATGGAGCACACATTACCCAGTGGTTTTATTAAGACTTGTGTTTCGGCATCTGAGCTATGTGAAATCTCACTCAAGGCTCTATGATGCCGGTATGTTCTCTATATGAATGTGGCACGACTGAAAACATAAAACTGTTATCACAAAACTGTTACATACATTGTAAAACAA---ACAGCTCTCtgatgtggt---ttggctctgtgtccccacccaaatctcatctcaaattatagtccccgtgt i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16658351 656 + 184069350 aaatttctattgttttaagccacacagtttgtgatactttgttatggccaccctaggaaactaatacaCCATCCATAAATATCCATGTACTACATGCAAGGTGCCATGCTCAGCACTGAGAATATGGAACAATGGAGATGTACACCTGGTATCTGGGACACATGTCAGTGTCTATAGACGTAGAGGAGGAAAGCAAAAAAATGTTCCACTTCATTTCAGCTCTAGTGTATTGCTTCTCTTCTAAAGAGCCACAGACAATTACTTCTCATCCTCTTCTTCCTCATTATTCCTTGGCTTACAAGTTAATGCATAC-ATCATCGGGTTCCCAGTATTTCCTTTTCTCCCCAATATTTTTCACCCCATACTTGCGTTTCTATTGTGATATAACAGAATGGCACGAAGTAGAAACATACCCTTCACGTGGAGCACATGTTACCCAGTGGTTTTATTAAGACTTGTGTTTCAGCATCTGAGCTGTGTGAAATCTCACTCAAGGCTCTATAATGCCTGTATGTTCTCTATATGAATGTGGCATGACTGAAAACATAAAACTGTTATCACAAAACTGTTACATACATTGTAAAACAA---ACAGCTCTCtgatgtggt---ttggctctgtgtccccacccaaatctcatcacaaattgtaatccccatgt i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20700576 656 + 189454096 aaatttctattgttttaagccacacagtttgtgatactttcttatggccaccctaggaaactaatacaCCATCCATAAATATCCATGTACTACATGCAAGGTGCCATGCTCAGCACTGAGAATATGGAACAATGGAGATGTACACCTGGTATCTGGGACACATGTCAGTGTCTATAGACGTAGAGGAGGAAAGCAAAAAAATGTTCCACTTCATTTCAGCTCTAGTGTATTGCTTCTCTTCTAAAGAGCCACAGACAATTACTTCTCATCCTCTTCTTCCTCATTATTCCTTGGCTTACAAGTTAATGCATAC-ATCATCGGGTTCCCAGTATTTCCTTTTCTCCCCAATATTTTTCACCCCATACTTGCGTTTCTATTGTGATATAATAGAATGGCACGAAGTAGAAACATACCCTTCACGTGGAGCACATGTTACCCAGTGGTTTTATTAAGACTTGTGTTTCAGCATCTGAGCTGTGTGAAATCTCACTCAAGGCTCTATAATGCCTGTATGTTCTCTATATGAATGTGGCATGACTGAAAACATAAAACTGTTATCACAAAACTGTTACATACATTGTAAAACAA---ACAGCTCTCtgatgtggt---ttggctctgtgtccccacccaaatctcatcgcaaattgtaatccccatgt i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16294287 652 + 178775436 aaatttctattgttttaagccacacagtttgtgatactttgttatggccaccctaggaaactaatacaccatCCATAAATATCCATGTACTACATGCAAGGTGCCATGCTCAGCACTGAGAATATGGAACAATGGAGATGTATACCTGGTATCTGGGACACATGTCAGTGTCTATAGAtgtagaggaggaaagaaaaaaagtgtttcactTCATTTTAGCTCCAGTGTATTGCTTCTCTTCTGAAGAGCC----ACCATTAGTTctcatcctcttcttcctcattaTTCCTTGGCTTATAAATTAATGCATAT-ATCATCGGGTTCCcagtatttccttttctccccaaTATTTTTCCCCCCATACTTGCGTTTCTATTGTGATATAATAAAATGGCACGAAGTAGAAACACACCCTTCACGTGGAGCACATGTTACCCAGTGGTTTTATTAAGACTTGTGTTTCAGCCTCTGAGCTGTGTGAAATCTCCCTCAAGGCTCTATAATGCCGGTGTGTTCTCTATATGAATGTGGCATGactgaaaacataaaactgtTATCACAAAACTGTTACATACATCGTAAAACAA---ACAGCtgtctgatgtggt---ttggctctgtgtccccacccaaatctcatcgcaaattgtaatccccgtgt i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19781499 654 - 48547382 aaatttctattgttttaagccacacagtttgtgatactttgttatggccaccctaggaaactaatacaCCATCCATAAATATCCATGTACTACATGCAAGGTGCCATGCTCAGCACTGAGAATATGGAACAATGGAGAGGTATACCTGGTATCTGGGACACATGTCAGTGT-TATAGATGTAGAGGAGGAAAGCAAAAAATTGTTTCACTTCATTTTAGCTCCAGTGTATTGCTTCTCTTCTGAAGAGCCACAGACAATTAGTTCTCATCCTCTTCTTCCTCATTATTCCTTGGCTTACACGTTAATGCATAT-ATCATGGGGTTCCCAGTATTTCCTTTTC-CCCCAATATTTTTCACCCCATACTTGCGTTTCTATTGTGATATAATAAAATGGCACAAAGTAGAAACACACCCTTCACGTGGAGCACACATTACTCAGTGGTTTTATTAAGACTTGTGTTTCAGCATCTGAGCTGTGTGAAATCTCACTCAAGGCTCTATAATGCCGGTATGTTCTCTATATGAATGTGGCATGACTGAAAACATAAAACTGTTATCACAAAACTGTTACATACATTGTAAAACAA---ACAGCTGTCtgatgtggt---ttggctctgtgtccccacccaaatctcatcgcaaattgtaatccccgtgt i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21136415 655 - 190850796 aaatttctgttgtttttagccacacagtttgtgataatttgttatggccaccctagaaaactattacaCCATCCATAAACATCCATCTACCACATGCAAGATGCCATGCTCAGTATTGAGAATATGAAACAATGGAGATGTATAACTGGTATCTGAGACACATATCAGTGTCTATAGACATAGAGGAGGAAGGTAAAAGAGCGTTCCACTTCATTTTAACCCCAGTGTGTTTCTTCTCTTCTAAGGAGCCACAGACAATTACTTCTCATCCTCCTTTTCCTCATTATTCCTTGGATTACAAGTTAATGTATAC-ATCATGGGGTTCCTAGTATTTCCTTTACTCCCCAGTATTTTGTGCCTCATA-TTGTGTTCAGATTGTGATATAATAAAAAGGCCCAAAGTAAAAACATACCCTTCACATTTTGCACACATTACCCAATGGTTTTATTAAGACTTGTGTTTTGGCATCTGAGCTATGTGAAATCTCACTCAAGGCTCTGTAATGCTGGTATGTTCCCTATATGAATGTGGCATGACTGAAAATGTAAAACTGTTATCATAAAACTGTTACATACAGTGTAAAACAA---ACAGCTCTCtgatatggt---ttggctctctgtcaccacccaaatctcatctcaaattgtaatctccatgt i calJac3.chr3 I 526 C 0 s canFam3.chr3 3719450 611 - 91889043 acatttctgttgtttcaagtcaccctgattgtagtactctattat-atcaccctaggaaaTGGAGACATCTTTCATAAGTA-CCACCTATGATATGCAAGGTGCCATA-TTAATGTTGAGAGT-TAGAGGAGTAGAAATATAAGCCTGGCTTCTGAGGGCCACATCAGTACCTCCAGCTGTAGAGGAGGAAGGCCCAACAATGTTCTTCTCCCTTTTAGTTCTAGCTTGTTAC-----TTCTAAAGAGCCACAAGCCATTATTCCTTTTATTCTTCTTCC---TTGCTCCTTGGCTCACAAACTATAGCTTACTACTGTGGCGTTCCTAGGATTTCCTTCTCTTTACAATATTTTATGCCTTATAGTTATGCATTCCCTGCAACAGAATAAAATGGCATGAGGTAGAAACACAAACTACATGC------------------TGGTTTTATCAAGCCTGGTGTCCCAGGACCTCAGTTATGTGCAATCTCACTCAATCTTCCATACTGCAGATGTGTGCTCTG-AAGCATGTGGCAGGACTAAGGATAAAAAACTATTATAA---------------------AAAACAAGGGGTgggcacctgagtgggccagtcggttaagcatccaactcctgatcctagctcaggtcttgatctcagggt i canFam3.chr3 C 0 I 66 e mm10.chr5 49123448 649 + 151834684 I a score=581721.000000 s hg38.chr4_KI270790v1_alt 17557 195 + 220246 gtcaagggagagacctggtgggaagtgactggatcgtaggagtggattctccatgctgttctcctgacggtgaatgacttctcacaagatctgatggcttaaaagtggcagtttcccctttgctctctctcgctcctgccgccttgtgaagcaaggacttgcttctccttctgccatgattgtaagtttcctgag s panTro4.chr4 21405077 195 + 193495092 gtcaagggagagacctggtgggaagtgactggatcgtaggagtggattctccatgctgttctcctgacggtgaatgacttctcacaagatctgatggcttaaaagtggcagtttcccctttgctctctctcgctcctgccgccttgtgaagcaagtacttgcttctccttctgccatgattgtaagtttcctgag i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21581210 195 + 198332218 gtcaagggagagacctggtgggaggtgactggatcataggagtggattccccatgctgttttcctgatggtgaatgacttctcacaagatctgatggtttaaatgtggcagtttctcctttgctctctctcgctcctgccgccttgtgaagcaagtacttgcttctccttctgccatgattgtaagtttcctgag i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20193557 195 - 85365473 gtcaagggagagacctggtgggaggtgactgaatcataggagtggattccccatgctgttctcctgatggtgagtgacttctcacgagatctgatggtttaaaagtggcagtttcccctttgctctctctctctcctgccgccttgtgaagcaagtacttgcttctccttctgccatgattgtaagtttcctgag i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16659007 195 + 184069350 gtcaagggagagacctggtgggaggtgactggatcataggcgtggatcccccacgctgttctcctgatggtgagtgacttctcacgagatctgatggtttaaaagtggcagtttcccctttgctttctctctctcctgccgccttgtgaagcaaatacttgcttatccttctgccatgattgtaagtttcctgag i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20701232 195 + 189454096 gtcaagggagagacctggtgggaggtgactggatcataggcgtggatcccccacgctgttctcctgatggtgagtgacttctcacgagatctgatggtttaaaagtggcagtttcccctttgctttctctctctcctgccgccttgtgaagcaaatacttgcttatccttctgccatgattgtaagtttcctgag i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16294939 195 + 178775436 gtcaagggagagacctagtgggaggtgactagATCATAGGCGTGgatcccccatgctgttctcctgatggtgagtgacttctcacgagatttgatggtttaaaagtggcagtttcccctttgctttctctctctcctgccaccttgtgaagcaAATacttgcttcaccttctgccatgattgtaagtttcctgag i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19782153 195 - 48547382 gtcaagggagagacctggtgggaggtgactggatcataggcgtggctccccgacgctgttctcctgatggtgagtgacttctcacgagatctgatggtttaaaagtggcagtttcccctttgctttctctctctcctgccgccttgtgaagtaaatacttgcttcgccttctgccatgattgtaagtttcctgag i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21137070 192 - 190850796 gtcaagggagagacctggtcgaaggtgactggatcataggagtgacttccccatgctgttctcctgatagtgagtgacctctcatgacatctgagtacttaaaagtgatagtttcttctctgctctctct--ttcctgccaccttgtgaagcaggtacttgcttct-cttccaccatgactgcaagtttcttgag i calJac3.chr3 C 0 I 8 e mm10.chr5 49123448 649 + 151834684 I e canFam3.chr3 3720061 66 - 91889043 I a score=62894.000000 s hg38.chr4_KI270790v1_alt 17752 25 + 220246 gcctctccagccatgcagaactgtg s panTro4.chr4 21405272 25 + 193495092 gcctctccagccatgcagaactgtg i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21581405 25 + 198332218 gcctctccagccatgcagaactgtg i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20193752 25 - 85365473 gcctctccagccgtgcagaactgtg i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16659202 25 + 184069350 gcctctccagccatgcggaactgtg i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20701427 25 + 189454096 gcctctccagccatgcggaactgtg i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16295134 25 + 178775436 gcctctccagccatgcggaactgtg i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19782348 25 - 48547382 gcctcttcagccatgtggaactgtg i chlSab2.chr27 C 0 C 0 e mm10.chr5 49123448 649 + 151834684 I e calJac3.chr3 21137262 8 - 190850796 I e canFam3.chr3 3720061 66 - 91889043 I a score=153092.000000 s hg38.chr4_KI270790v1_alt 17777 68 + 220246 agtcaattaaatctcttttatttataaattacccagtctcaggcaattctttataac-gtgtgaaaatg s panTro4.chr4 21405297 68 + 193495092 agtcaattaaatctcttttatttataaattacccagtctcaggcaattctttataac-aggtgaaaatg i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21581430 69 + 198332218 agtcaattaaatctcttttatttataaattacccagtctcaggcaattctttataacagtgtgaaaatg i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20193777 69 - 85365473 agtccattaaacctcttttatttataaattacccagcctcaggctattctttataacagtgtgaaaatg i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16659227 69 + 184069350 agtcaattaaacctcttttatttataacttatccagtctcaggcaattttttataacagtgtgaaaatg i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20701452 69 + 189454096 agtcaattaaacctcttttatttataacttatccagtctcaggcaattttttataacagtgtgaaaatg i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16295159 69 + 178775436 agtcaattaaacctcttttatttataaattatccagtctcaggcaattctttataacagtgtgaaaatg i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19782373 69 - 48547382 agtcgattaaacctcttttatttataaattatccagtctcaggtaattctttataacagtgtgaaaatg i chlSab2.chr27 C 0 C 0 s canFam3.chr3 3720127 40 - 91889043 AATCAACAAAACCCC---CACATATTAAGTACA---------------TTTTAAAACA----------- i canFam3.chr3 I 66 C 0 e mm10.chr5 49123448 649 + 151834684 I e calJac3.chr3 21137262 8 - 190850796 I a score=705520.000000 s hg38.chr4_KI270790v1_alt 17845 257 + 220246 aactaatacaCTCTCAAAATCCATCCA-------------ATGCATAAAAGCACCATTTGAACTGCCACAAATGCAATAAGGCCTCTGAAGTTTTCTAGTTCCACCCTTTCCATCACC-TCAGCTAAAGTA---TCTT---CTCCTAAACTCCAGGACCTCCTTTTGTAAGA--GTGAGAATTCCTAAATTAAAATAACCAACAGAAAGTGC-------CAAAG--Aaggaagggagaaagggagggtg---ggatg--------gaAACAAAATTGATGAGTGCAGTTGTAAGTTTCA s panTro4.chr4 21405365 257 + 193495092 aactaatacaCTCTCAAAATCCATCCA-------------ATGCATAAAAGCACCATTTGAACTGCCACAAGTGCAATAAGGCCTCTGAAGTTTTCTAGTTCCACCCTTTCCATCACC-TCAGCTAAAGTA---TCTT---CTCCTAAACTCCAGGACCTCCTTTTGTAAGA--GTGAGAATTCCTAAATTAAAATAACCAACAGAAAGTGC-------CAAAG--AAGGAAGGGAGAAAGGGAGGGTG---GGATG--------GAAACAAAATTGATGAGTGCAGTTGTAAGTTTCA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21581499 257 + 198332218 aactaatacaCTCTCAAAATCCATCCA-------------ATTCATAAAAGCACCATTTGAACTTCCGCAAATGCAATAAGGCCTCTGAAATTTTCTAGTTCCATCCTTTCCATCACC-TCAGCTAAAGTA---TCTT---CTCCTAAACTCCAGGACCTCCTTTTATAAGA--GTGAGAATTCCTAAATTAAAATAACCAACAGAAAGTGC-------AAAAG--AAGGAAGGGAGAAAGGGAGGGTG---GGATG--------GAAACAAAATTGATGAGTGCAGTTGTAAGTTTCA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20193846 260 - 85365473 gactaatacaCTCTCAAAATCCATCCA-------------GTGCATAAAAGCACCATTTGAACTGCCACAAATGCAATAAGGCCTCTGAAATTTTCTAGTTCCACCCTTTCCATCACC-TCAGCTAAAGTATCGTCTC---CTCCTAAACTGCAGGACCTCCTTTTATAAGA--GTGAGAATTCCTAAATTAAAATAACCAACAGAAAGTGC-------AAAAG--AAGGAAGGGAGAAAAGGAGGGTG---GGATG--------GAAACAAAATTGATGAGTGCAGTTGTAAGTTTCA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16659296 260 + 184069350 gactaatacaCTCTCCAAATCTATCCA-------------GTGCATAAAAGCACCATTTGAACTGCCACAAATGCAATGAGGCCTCTGAAATTTTCTAGTTCCACCCTTTCAATCACC-TCAGCTAAAGTA---TCTTCTCCTCGTAAACTCCAGGACCTCCTTTTATAAGA--GTGAGAATTCCTAAATTAAAATAACCAACAGAAAGTGC-------AAAAG--AAGGAAGGGAGAAAGGGAGGGTG---GGATG--------GAAACAAAATTGATGAGTGCAGTTGTAAGTTTCA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20701521 260 + 189454096 gactaatacaCTCTCCAAATCTATCCA-------------GTGCATAAAAGCACCATTTGAACTGCCACAAATGCAATGAGGCCTCTGAAATTTTCTAGTTCCACCCTTTCAATCACC-TCAGCTAAAGTA---TCTTCTCCTCGTAAACTCCAGGACCTCCTTTTATAAGA--GTGAGAATTCCTAAATTAAAATAACCAACAGAAAGTGC-------AAAAG--Aaggaagggagaaagggagggtg---ggatg--------gaAACAAAATTGATGAGTGCAGTTGTAAGTTTCA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16295228 257 + 178775436 gactaatacactctccAAATCTATCCA-------------GTGCATAAAAGCACCATTTGAACTGCCACAAATGCAATGAGGCCTCTGAAATTTTCTAGTTCCACCCTTTCCATCACC-TCAGCTAAAGTA---TCTT---CTCGTAAACTCCAGGACCTCCTTTTATAAGA--GTGAGAATTCCTAAATTAAAATAACCAACAGAAAGtgc-------aaaag--aaggaagggagaaagggagggtg---GGATG--------GAAACAAAATTGATGAGTGCAGTTGTAAGTTTCA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19782442 256 - 48547382 gactagtacaCTCTCCAAATCCATCCA-------------GTGCATAAAAGCACCATTTGAACTGCCACAAATGCAATAAGACCTCTGAAATTTTCTAGTTCCACCCTTTCTATCACC-TCAGCCAAAGTA---TCTTCTCCTCGTAAACTCCAGGACCTCCTTTTATAAGA--AAGAGAATTCCAAAATTAAAATAACCAACAGAAAGTAC-------AAAAG--AAGGAAGGGAGAAAGGGAGGGTG-------G--------GAAACAAAATTGATCAGTGCAGTTGTAAGTTTCA i chlSab2.chr27 C 0 C 0 s mm10.chr5 49124097 246 + 151834684 AACAAATGC-CTCTAGAAGTCCATGCAAATCATCCAATGCATGCATGAAAGGAGC-TTTGAACTGCTACAAATGCACCAAGGCCTTTCCTGTCGTCTAGTTTCTTCCTCTCATACATCATCATCAACTCTG---TCTT--TCTTGTGGAGTCTAG-----------ATAAAA--GGAGGAG-----AAATACAAAGAATGAACACAAAGTTT-------GAGGGGTAGGAAGGGGAGGAAGGGAAG---------------------AATAATTCAGAGAAGTAAATTTGTGAATGTCA i mm10.chr5 I 649 I 207 s canFam3.chr3 3720167 259 - 91889043 ----AACA-GCTGTCAAAATC-ATCTA-------------ATGCATAAAAACAGCATTTGGACTGCCACACATGTCACG-GGCCTTCTATGTTTTCCAGTTTGACCTGG----------TCACCTGAAGTG---TCATTTCCTCTCAAATTCTGGGACTACTTTTTACAGGAATATGCGGCTTCTAAAATTAAAAGAACCACCAGAAAGTGCCCCATTTAGagg--aaggaaggaaggaaggaagaatggatggaTGGGAAAAGAGAAAAAAAATTGATAATGA-----GTGAATTTCA i canFam3.chr3 C 0 C 0 e calJac3.chr3 21137262 8 - 190850796 I a score=332219.000000 s hg38.chr4_KI270790v1_alt 18102 112 + 220246 GGGATTCTTTACATTCCTAACATTGGTTTATTT----GGTATTATAAATTAAGAAAATTT-AAAAATTATCCATAATGCCCAATGACTTTGTTTACAGATTTGTATCAGATCTTACA s panTro4.chr4 21405622 112 + 193495092 GGGATTCTTTACATTCCTAACATTGGTTTATTT----GGtattataaattaagaaaattt-aaaaattatCCATAATGCCCAATGACTTTGTTTACAGATTTGTATCAGATCTTACA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21581756 112 + 198332218 GGGATTCTTTACATTCCTAACATTGGTTTATTT----GGtattataaattaaaaaaattt-aaaaattatCCATAATTCCCAATGACTTTGTTTATAGATTTGTATCACATCTTACA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20194106 112 - 85365473 GGGATTCTTTACATTCCTAACATTGGTTTATTT----GGTATTATAAATTAAGAAAATTT-AAAAATTATCCATAATGCCCAATGACTTTTTTTATAGATTTGTATCAGATCTTACA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16659556 111 + 184069350 GGGATTCTTTACATTCCTAACA-TGGTTTATTT----GGTATTATAAATTCAGAAAATCT-AAAAATTATTCATAATGCCCAATGACTTTGTTTATAGATTTGTATCAAATCTTACA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20701781 111 + 189454096 GGGATTCTTTACATTCCTAACA-TGGTTTATTT----GGTATTATAAATTCAGAAAATCT-AAAAATTATTCATAATGCCCAATGACTTTGTTTATAGATTTGTATCAAATCTTACA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16295485 110 + 178775436 GGGATTCTTTACATTCTTAACA-Tggtttattt-----gtattataaattcagaaaattt-aaaaattattcataatgcCCAATGACTTTGTTTATAGATTTGTATCAAATCTTACA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19782698 112 - 48547382 GGGATTCTTTACATTCCTAACATTGGTTTATTT----GGTATTATAAATTAAGAAAATTT-AAAAATTATTCATAATGCCCAATGACTTTGTTTATAGATTTGTATCAAATCTTACA i chlSab2.chr27 C 0 C 0 s mm10.chr5 49124550 114 + 151834684 ggcACTCCTCTAATTCTTAATA-TGATTTTTTTTTTTGGTTTTATAAATTAAGGAAAGCT--TCTATTTCTCATAATGTACAATGATCCTTTTTATATATTTTCTCTAGATCTTGCA i mm10.chr5 I 207 I 169 s canFam3.chr3 3720426 111 - 91889043 GAGATTCTTCAAATTCTCAACATTGGTTTCCTT----GGTGTTATCAATTAAGGAAATTTTTTTAATGGCACAAAATGTCCAATGACTGTGTTTATATA--TATAGCATACCTTACA i canFam3.chr3 C 0 C 0 e calJac3.chr3 21137262 8 - 190850796 I a score=291523.000000 s hg38.chr4_KI270790v1_alt 18214 114 + 220246 GGAAAT----GGATCACTGAAATAGTCATGTCCAGATTGAGCTGACATTTACTGAG-TTCCCCTTCCACTTCAAACTCAGTGTCAGATACCATTTTATATGCTGTG-TAAGAATTCTTTT s panTro4.chr4 21405734 114 + 193495092 GGAAAT----GGATCACTGAAATAGTCATGTCCAGATTGAGCTGACATTTACTGAG-TTCCCCTTCCACTTCAAACTCAGTGTCAGATACCATTTTATATGCTGTG-TAAGAATTCTTTT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21581868 115 + 198332218 GAAAAT----GGATCACTGAAATAGTCATGTCCAGATTGAGCTGACATTTACTGAGCTTCCCCTTCCACTTCAAACTCAGTGTCAGATACCATTTTATATGCTGTG-TAAGAATTCTTTT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20194218 114 - 85365473 GAAAAT----GGATCACTGAAATAGTCATGTCCAGATTGAGCTGACATTTACTGAG-CTCCCCTTCCACTTCAAACTCAGTGTCAGATACCACTTTATATGCTGTG-TAAGAATTCTTTT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16659667 118 + 184069350 GAAAATGGAAGGATCACTGAAATAGTCATGTCCAGACTGAGCTGACATTTAGTGAG-CTCTCCTTCCACTTCAAACTCAGTGTCAGATAGCATTTTATATGCTGTG-TAAGAATTCTTTC i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20701892 118 + 189454096 GAAAATGGAAGGATCACTGAAATAGTCATGTCCAGACTGAGCTGACATTTAGTGAG-CTCTCCTTCCACTTCAAACTCAGTGTCAGATAGCATTTTATATGCTGTG-TAAGAATTCTTTC i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16295595 119 + 178775436 GAAAATGGAAGGATCACTGAAATAGTCATGTCCAGACTGAGCTGACATTTAGTGAG-CTCTCCTTCCACTTCAAACTCAGTGTCAGATAGCATTTTATATGCTGTGTTAAGAATTCTTTc i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19782810 118 - 48547382 GAAAATGGAAGGATCACTGAAATAGTCATGTCCAGATTGAGCTGACATTTAGTGAG-CTCTCCTTCCAATTCAAACTCAGTGTCAGATACCATTTTATATGCTGTG-TAAGAATTCTTTC i chlSab2.chr27 C 0 C 0 s canFam3.chr3 3720537 93 - 91889043 GAAGATGAGAAGATCATTGAAATGTTGATATTCAGatcgagctaacattca-tgag-tgtctattccatttcag------------------------atgttgct-ccagaaacctttc i canFam3.chr3 C 0 I 40 e mm10.chr5 49124664 169 + 151834684 I e calJac3.chr3 21137262 8 - 190850796 I a score=282523.000000 s hg38.chr4_KI270790v1_alt 18328 119 + 220246 GTGAggccgggcacagtggctcacgtttgtaatcccagcactttgggaggcccaggcaggcggatcccgaggtcaggagtataagaccagcctggccaacacagtgaaaccccgtttct s panTro4.chr4 21405848 119 + 193495092 GTGAggccgggcacagtggctcacgtttgtaatcccagcactttgggaggcccaggcaggcggatcccgaggtcaggagtatgagaccagcctggccaaaacagtgaaaccccgtttct i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21581983 119 + 198332218 GTGAggccgggcacgatggctcacgtttgtaatcccagcactttgggaggcccaggcaggcggatcccgaggtcaggagtatgagaccagcctggccaacacagtgaaaccctgtttct i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20194332 118 - 85365473 GTGAggctgggcatgatggctcacgtttgtaatctcagcactttgggaggcccaggcaggtggatccc-aggtcaggagtatgagaccagcctggccaacacagtgaaaccctgtttct i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16659785 119 + 184069350 GTAAggccgggcacggtggttcacgtttgtaatcccagcactttgggaggcccaggcgggaggatccccaggtcaggactatgagaccagcctgaccaacacagtgaaaccctgtttct i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20702010 119 + 189454096 GTAAggccgggcacggtggttcacgtttgtaatcccagcactttgggaggcccaggcgggaggatccccaggtcaggactatgagaccagcctgaccaacacagtgaaaccctgtttct i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16295714 118 + 178775436 gtaaggccgggcacggtggttcacgtttgtaatcccagcactttgggaggcccaag-gggAGGATCCCCAGGTCAGGActatgagaccagcctgaccaacacagtgaaaccctgtttct i papAnu2.chr5 C 0 I 2457 s chlSab2.chr27 19782928 119 - 48547382 GTAAggctgggcacggtggttcacgcttgtaatcccagcactttgggaggcccaggcgggcggatccccaggtcaggactatgagaccagcctggtcaacacagtgaaaccctgtttct i chlSab2.chr27 C 0 C 0 e mm10.chr5 49124664 169 + 151834684 I e calJac3.chr3 21137262 8 - 190850796 I e canFam3.chr3 3720630 40 - 91889043 I a score=362389.000000 s hg38.chr4_KI270790v1_alt 18447 221 + 220246 actaaaagtacacaaattagctgggcatggtggcgggcacctgtaatcccagctactcggaaggctgaagcaggagaatcgcttgaaccgggaggtggcagttgcagtgagctgagattgtgccattgcactccagcttgggcaacagagctagactcct---------------------------------------tctcaaaaacaaacaaacaaacagacaaaaaaaa--------aaaaaAA-----------------GAATTATTTTGTGCTTATTT s panTro4.chr4 21405967 228 + 193495092 actaaaagtacacaaattagctgggcatggtggcgggcacctgtaatcccagctactcggaaggctgaagcaggagaatcgcttgaaccgggaggtggcagttgcagtgagctgagattgtgccattgcactccagcttgggcaacagagctagactcct---------------------------------------tctcaaaaacaaacaaacagacagacaaaaaaaa--------aaaaaaaaaAAAA----------AGAATTCTTTTGTGCTTATTT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21582102 264 + 198332218 actaaaaatacacaaattagctgagcatggtggcaggtgcctgtaatcccatctactcgggaggctgaagcaggagaatcgcttgaaccaggaggtggcatttgcagtgagctgagattgtgccattgcactccagcttgggcgacagagctagactccgtccattgcactccagcttgggcgacagagctagactccatctcaaaaacaaacaaacaaacaaacagacaaaa--------aaaaaAA---AAA----------AGAATTCCTTTGTGCTTATTT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20194450 215 - 85365473 actaaaaatacacaaattagctgggcatggtggcaggcgcctgtaatcccagctactcgggaggctgaagtaggagaatcgcttgaaccgggaggtggcagttgcagtgagctgagattgtgccattgcactccagcttgggcaacagagctagactcca---------------------------------------tctcaaaaacaaacaaacaaacaaacaaacaaaA--------A-----------------------GAATTATTTTGTGCTTATTT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16659904 244 + 184069350 actaaaaatacacaaattagctgggcatggtggtgggcacctgaaatcccagctactcaggaggctgaagcaggagaatcgcttaaattgggaggtggcggttgcagtgagctgagattgtgccatggcactccggcttgggcaacagagatagactcca---------------------------------------tctcaaaaacaaataaacagacagacaaaaaaaa-AGAGAG-AAAAAAAAGAAAAGAAAAGAGAGAGAATTCTTTTGTGCTTATTT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20702129 246 + 189454096 actaaaaatacacaaattagctgggcatggtggtgggcacctgaaatcccagctactcaggaggctgaagcaggagaatcgcttaaattgggaggtggcggttgcagtgagctgagattgtgccatggcactccggcttgggcaacagagatagactcca---------------------------------------tctcaaaaacaaataaacagacagacaaaaaaaaGAGAGagaaaaaaaaagaaaagaaaagagagagaaTTCTTTTGTGCTTATTT i macFas5.chr5 C 0 C 0 s chlSab2.chr27 19783047 242 - 48547382 actaaaaatacacaaattagttgggcatggtggtggacacctgaaatcccagctactcaggaggctgaagcaggagaatcgcttaaactgggaggtggcggttgcagtgagctgagattgtgccatggcactctggcttgggcaacagagatagactcca---------------------------------------tctcaaaaacagacagacagacagataaaaaaaa---aaaa-aagaaaaagaaaaAAGAAAAGAGAGAATTCTTTTGTGCTTATTT i chlSab2.chr27 C 0 C 0 e mm10.chr5 49124664 169 + 151834684 I e calJac3.chr3 21137262 8 - 190850796 I e canFam3.chr3 3720630 40 - 91889043 I e papAnu2.chr5 16295832 2457 + 178775436 I a score=187309.000000 s hg38.chr4_KI270790v1_alt 18668 90 + 220246 ACACAAGCTCAAATAGGAGTGAACAAAGTTTTATTAGCTTGTATGTAGTCACGCATTATTATAACCAATATTAATACTGGGTCTTAAACT s panTro4.chr4 21406195 90 + 193495092 ACACAAGCTCAAATAGGAGTGAACAAAGTTTTATTAGCTTGTATGTAGTCATGCATTGTTATAACCAATATTAATACTGGGTCTTAAACT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21582366 90 + 198332218 ACACAAGCTCAAATAGGAGTGAACAAAGTTTTATTAGCTTGTATGTAGTCATGCATTATTATAACCAATATTAATACTGGGTCTTAAACT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20194665 90 - 85365473 ACACAAGCTCAAATAGGAGTGAACAAAGTTTTATTAGCTTGTATGTAGTCATGCATTATTATAACCAATATTAATACTGGGTCTTAAACT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16660148 90 + 184069350 ACACAAGCTCAAATAGAAGTGAACAAAGTTTTCTTAGCTTGTATGTAGTCATGCATTATTATAACCAATATTAATACTGGGTCTTAAACT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20702375 90 + 189454096 ACACAAGCTCAAATAGAAGTGAACAAAGTTTTCTTAGCTTGTATGTAGTCATGCATTATTATAACCAATATTAATACTGGGTCTTAAACT i macFas5.chr5 C 0 C 0 s chlSab2.chr27 19783289 90 - 48547382 ACACAAGCTCAAATAGAAGTGAACAAAGTTTTCTTAGCTTGTATGTAGTCATGCATTAATATAACCAATATTAATACTGGGTCTTAAACT i chlSab2.chr27 C 0 C 0 s canFam3.chr3 3720670 81 - 91889043 acacaggatgaaattgaggtgtacaaagtttcagtaatttgtatagagccttacactattatgatacatagagattcaggg--------- i canFam3.chr3 I 40 C 0 e mm10.chr5 49124664 169 + 151834684 I e calJac3.chr3 21137262 8 - 190850796 I e papAnu2.chr5 16295832 2457 + 178775436 I a score=515070.000000 s hg38.chr4_KI270790v1_alt 18758 211 + 220246 TAATTAGGCCTTCAGATTTGAAAATCTCAATATTTCTTTCTACTAAACCATGTGGCCTCACCAAATATATTTCTGTATGAATCCTAGAGCACATGTTATCTTGGGAGGAGTCTGTTTTTT---GCTTTTACAAAACAGTCATATTGCCAAATATTTAAAAGAAGAAGTTCTACAATTTATAGTATACGGTCACACTGTCACCTGACAACCTTTA s panTro4.chr4 21406285 210 + 193495092 TAATTAGGCCTTCAGATTTGAAAATCTCAATGTTTCTTTCTACTAAACCATGTGGCCTCACCAAATATATTTCTGTACGAATCCTAGAGCACATGTTATCTTGGGAGGAGTCTGTTTTTT---GCTTTTACAAAACAGTCATATTGCCAAATATTTAAGAGAAGAAGTTCTACA-TTTATAGTGTACAGTCACACTGTCACCTGACAGCCTTTA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21582456 211 + 198332218 TAATTAGGCCTTCAGATTTGAAAATCTCAATGTTTCTTTCTACTAAACCATGTGGCCTCACCAAATATATTTCTGTATGAATCCTAGAGCACATGTTATCTTGGGAGGAGTCTGTTTTTT---GCTTTTACAAAACAGTCACATTGCCAAATATTTAAGAGAAGAAGTTGTACAATTTATAGTATATGGTCACACTGTCACCTGAAAACCTTTA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20194755 211 - 85365473 TAATTAGGCCTTCAGATTTGAAAATCTCAATGTTTCTTTCTACTAAACCATGTGGCCTCACCAAATATATTTCAGGACAAATCCTAGAGCACGTGTTATCTTGGGAGGAGTCCGTTTTTT---GCTTTTACAAAACAGTCATATTGCCAAATATTTAAGAGAAGAAGTTCTACAATTTATAGTGTATGGTCACACTGTCACCTGACAACATTTA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16660238 211 + 184069350 TAATTAGGCCTTCAGATTTGAAAATCTCAATGGTTCTTTCCACTAAACCATGTGGCCTCACCAAATATATTTCTGTACGAATCCTAGAGCACATGTTATCTTGGGAGGAGTCTGTTTTTT---GCTTTTACAAAACAGTCATATTGCCAAATATTTAAGAGAAGAAGTTCTACAATTTATAGTATATGGCCACACTGTCACCTGACAACCTTTA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20702465 211 + 189454096 TAATTAGGCCTTCAGATTTGAAAATCTCAATGGTTCTTTCCACTAAACCATGTGGCCTCACCAAATATATTTCTGTACGAATCCTAGAGCACATGTTATCTTGGGAGGAGTCTGTTTTTT---GCTTTTACAAAACAGTCATATTGCCAAATATTTAAGAGAAGAAGTTCTACAATTTATAGTATATGGCCACACTGTCACCTGACAACCTTTA i macFas5.chr5 C 0 C 0 s chlSab2.chr27 19783379 207 - 48547382 TAATTAGGCCTTCAGATTTGAAAATCTCAATGGTTCTTTCCACTAAACTGTGTGGCCTCACCAAATATATTTCTGTACGAATCCTAGAGCACATG---TCTTGGGAGGAGTCTG-TTTTT---GCTTTTACAAAACAGTCATATTGCCAAATATTTAAGAGAAGAAGTTCTACAATTTATAGTATACGGTCACACTGTCACCTGACAACCTTTA i chlSab2.chr27 C 0 C 0 s mm10.chr5 49124833 196 + 151834684 TAACTAGGACTTCAGACTTGAAAATCCAAAATATTCCTTCTGCTAAGCCATATGACTTCCCCAAATATATTTTTAAACACAACTCTGGGCACATGATATCACAAGAGAAATTTCTTT--------TTTTAC----TAGGCATATGACCAAATAATTAA------AAGTCCTAGAATTTATTGCCTAAAATCACAATGTAACATGACCACATTTT i mm10.chr5 I 169 C 0 s canFam3.chr3 3720751 200 - 91889043 --------ctttcagatttgaaaatccaaatg-ttatttctgccaaaccatgtggcctcCCCAAATACATTTTCACACAAATCCTAGGGCACATGTTATCACGAGAGAAATCTTTTTTTTTCCACTCTTACAGAACAGGCACATGGCCAAATAAATAA-----GAAGTCTTACAGTTTATAGTATAAAATCACACTGCCGCATGACAACCTTTA i canFam3.chr3 C 0 C 0 e calJac3.chr3 21137262 8 - 190850796 I e papAnu2.chr5 16295832 2457 + 178775436 I a score=387798.000000 s hg38.chr4_KI270790v1_alt 18969 134 + 220246 ATAAC-AAAAATAGACAACCTTACATGTACATAGATAACATTTCAGCAACAGTTTTCTAACAGTGAGCCACAGCTAAAATTGTGAGCATGGGTACTTC-AGCATGAAGGCTCAAATCAGGAGAATACGTACAAGAG s panTro4.chr4 21406495 134 + 193495092 ATAAC-AAAAATAGACAACCTTACATGTACATAGATAACATTTCAGCAACAGTTTTCTAACAGTGAGCCACAGCTAAAATTGTGAGCATGGATACTTC-AGCATGAAGGCTCAAATCAGGAGAATACGTACGAGAG i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21582667 134 + 198332218 ATAAC-AAAAACAGACAACCTTACGTGTACACAGATAACATTTCAGCAACAGTTTTCTAACAGTGAGCCACAGCTAAAATTGTGAGCATGGGTACTTC-AGCATGAAGGCTCAAATCTGGTGAATACGTACAAGAG i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20194966 134 - 85365473 ATAAC-AAAAATAGACAACCTTACATGTACATAGATAACATTTCAGCAACAGTTTTCTAACAGTGAGCCACAGCTAAAATTGCGAGCATGGGTACTTC-AGCAAGAAGGCTCAAATCAGGAGAATATGCACAAGAG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16660449 132 + 184069350 ATAAC-AAAAATAGACAACATTACATGACCATAGATAACATTTCAGCAACAGTTTTCTAGCAGTGAGCCACAGCTAAAACTGTGAGCATGGGTACTTC-AGCATGAAGGCCCAAATCAGGTGAATATGTAC--GAG i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20702676 132 + 189454096 ATAAC-AAAAATAGACAACATTACATGACCATAGATAACATTTCAGCAACAGTTTTCTAGCAGTGAGCCACAGCTAAAATTGTGAGCATGGGTACTTC-AGCATGAAGGCCCAAATCAGGTGAATATGTAC--GAG i macFas5.chr5 C 0 C 0 s chlSab2.chr27 19783586 132 - 48547382 ATAGC-AAAAATAGACAACATTACATGACCATAGATAACATTTCAGCAACAGTTTTCTAACAGTGAGCCACAGCTAAAATTGTGAGCATGGGTACTTC-AGCATGAAGGCCCAAATCAGGTGAATATGTAC--GAG i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21137270 121 - 190850796 ATAAC-AAAAATAAACAACCTTACATGTACTTAGATAGCATTTCAGCAACAGTTTTCTAACAGTGAGCCA-------------GAGCATGGGTACTTC-AGCATGAACGCTCAAATCAGGTGAGTATGCACAAGAG i calJac3.chr3 I 8 C 0 s mm10.chr5 49125029 132 + 151834684 ACGGCAAAAAATAGATGACCTTACAAGTATATGGA----ACGTTAGCAACAAATTTCCCACAATGAGCCACAGCTAAACTTGTGTGTATGGGTACTTTAAATACCAAAGCACATGTCAGGGTAGAATCTGCAGGAA i mm10.chr5 C 0 C 0 s canFam3.chr3 3720951 130 - 91889043 GTAAC-AAAAATAGACAACTTCACACATACCCAG----CAATTAAGCTGAAGTTTTCCAACAGTGAGCCACAGCTAAAGTTGTGAGTATTGGTACTTT-GACATCAAGACTCACATCAGGTGAATATGTGCAAAGG i canFam3.chr3 C 0 I 3388 e papAnu2.chr5 16295832 2457 + 178775436 I a score=27477.000000 s hg38.chr4_KI270790v1_alt 19103 8 + 220246 agaggctc s panTro4.chr4 21406629 8 + 193495092 agaggctc i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21582801 8 + 198332218 agaggctc i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20195100 8 - 85365473 agaggctc i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16660581 8 + 184069350 agaggctc i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20702808 8 + 189454096 agaggctc i macFas5.chr5 C 0 C 0 s chlSab2.chr27 19783718 8 - 48547382 agaggctc i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21137391 8 - 190850796 agagactc i calJac3.chr3 C 0 C 0 s mm10.chr5 49125161 8 + 151834684 TACAGCTC i mm10.chr5 C 0 I 3465 s canFam3.chr3 3724469 8 - 91889043 agaggctc i canFam3.chr3 I 3388 C 0 e papAnu2.chr5 16295832 2457 + 178775436 I a score=1067828.000000 s hg38.chr4_KI270790v1_alt 19111 401 + 220246 atgagaatttaaccttaccttgcatttcccctaaaaacaatggctctggattcaccaattcagtgttcaagatgactttataaaatataactaccctaaataatgatgattcactgTACTTTATCTTACTCTTAAACATGTACAAATTTTAGTAGCTTATGAAAGGATCAAGGTAACTCCTGTAG--AAAGAAAAACTAGTTTAATCTTGTTTGATCCATTATTTACCAAACGTTTTTGACTACAGATCTAACTTATAAAGAATA--CATATTATCACCTCACAGGACAGGAATG---------CATTGTTT-GGAGGCCCTGCTGTAGGTGTTCAGAGGTTTTTT-CAGTCCT-----TCTTTTGAGGCCACATGATCTATTATTTAGAGTGTTTTAAAGCATCACTCATGACCATAAAT s panTro4.chr4 21406637 402 + 193495092 atgagaatttaaccttaccttgcatttcccctaaaaacaatggctctggattcaccaattcagtgttcaaggtgactttataaaatataactaccctaaataatgatgattcactgTACTTTGTCTTACTCTTAAACATGTACAAATTTTAGTAGCTTATGAAAGGATCAAGGTAACTCCTGTAG--AAAGAAAAACTAGTTTAATCTTGTTTGATCCATTATTTACCAAACGTTTTTGACTACAGATCTAACTTATAAAGAATA--CATATTATCACCTCACAGGACAGGAATG---------CATTGTTT-GGAGGACCTGCTGTAGGTGTTCAGAGGTTTTTTTCAGTCCT-----TCTTTTGAGGCCACATGATCTATTATTTAGAGTGTTTTAAAGCATCACTCATGACCATAAGT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21582809 410 + 198332218 atgagaatttgaccttaccttgcatttcccctaaaaacaatggctctggattcaccaattcagtgttcaagatgactttataaaatataactaccctaaataatgatgattcactgTACTTTGTCTTACTCTTAAACATATACAAATTCTAGTAGCTTATGAAAGGATCAAGGTAACTCCTGTAG--AAAGAAAAACTAGTTTAATCTTGTTTGATCCATTATTTACCAAACGTTTTTGACTACAGATCTAACTTATAAAGAATA--CATATTATCACCTCACAGGACAGGAATGCTTAGTGGCCAATGTTT-GGAGGCCCTGCTGTAGGTGTTCAGATGTTTCTT-CAGTCCT-----TCTTTTGAGGCCACGTGATCTATTATTTAGAGTGTTTTAAAACATCACTCATGACCATAAAT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20195108 412 - 85365473 atgagaatttaaccttaccttgcatttcccctaaaagcaatggctctggattcaccaattcagtgttcaagatgactttataaaatataactaccctaaataatgatgattcactgCACTTTGTCTTACTCTTAAACATGTACAAATTCTAGTAGCTTATGAAAGGATCAAGGTAACTCCTGTAGAAAAAAAAAAACTAGTTGAATCTTGTTTGATCCATTATTTACCAAACGTTTTTGACTACGGATCTAACTTATAAAGAATA--CATATTATCACCTCACAGGACAGGAATGCTCAGTGGCCAATGTTT-GGAGGCCCTGCTGTAGGTGTTCAGAGGTTTCTT-CAGTCCT-----TCTTTTAAGGCCACGTGATCTATTATTTAGAGTGTTTTAAAGCATCACTCATGACCATAAAA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16660589 410 + 184069350 ataaaaatctaaccttaccttgcatttccccaaaaagcagtggctcaggattcaccaattcagtgttcaagatgattttataaaatatgaataccctaaataatgatgattcactgTATTTTGTCTTACTCTTAAACATGTACAAATTCTAGTAGCTTATGAAAGGATCAAGGTAACTCCTGTAG--AAAGAAAAACTAGTTTAATCTTCTTTGATCCATTATATACCAAACGTTTTTGACTACGGATCTAACTTATAAAGAATA--CATATTATCACTTCACAGGACAGGAATGCTCAGTGGCCAATGTTG-GGAGGCCCTGCTGTAGGTGTTCAGAGGTCTTTT-CAGTCCT-----TCTTATGAGGCCACACGATCTATTATTTAGAGAGTTTTAAAGCATCACTCATGATCGTAAAT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20702816 410 + 189454096 ataaaaatctaaccttaccttgcatttccccaaaaagcagtggctcaggattcaccaattcagtgttcaagatgattttataaaatatgaataccctaaataatgatgattcactgTATTTTGTCTTACTCTTAAACATGTACAAATTCTAGTAGCTTATGAAAGGATCAAGGTAACTCCTGTAG--AAAGAAAAACTAGTTTAATCTTCTTTGATCCATTATATACCAAACGTTTTTGACTACGGATCTAACTTATAAAGAATA--CATATTATCACTTCACAGGACAGGAATGCTCAGTGGCCAATGTTG-GGAGGCCCTGCTGTAGGTGTTCAGAGGTCTTTT-CAGTCCT-----TCTTATGAGGCCACACGATCTATTATTTAGAGAGTTTTAAAGCATCACTCATGATCGTAAAT i macFas5.chr5 C 0 C 0 s chlSab2.chr27 19783726 410 - 48547382 ataaaaatctaaccttaccttgcatttccccaaaaagcagtggctcaggattcaccaattcagtgttcaagatgattttataaaatataaataccctaaataatgacgattcactgTATTTTGTCTTACTCTTAAACATGTACAAATTCTAGTAGCTTATGAAAGGATCAAGGTAACTCCTGTAG--AAAGAAAAACTAGTTTAATCTTGTTTGATCCATTATATACCAAGCGTTTTTGACTATGGATCTAACTTATAAAGAATA--CATATTATCACTTCACAGGATAGGAATGCTCAGTGGCCAATGTTG-GGAGGCCCTGCTGTAGGTGTTCAGAGGTCTTTT-CAGTCCT-----TCTTTTGAGGCCACGTGATCTATTATTTAGAGTGTTTTAAAGCATCACTCATGACCATAAAT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21137399 396 - 190850796 ataagaatgtg-----actttgcattttccctaaaagcaatggctcaggattctccaattcagtgttcaagatgactttataaaatataactaccctaaataataatgattgactgAACTTTGTCTTACTCTTAAACATGTACAAATTCTAGTAGCTTATAAAAGGATCAAGGTAACTCCTGTAG--AAAGAAAAACAAGTTTAATATTGTTTGATCCTTTATTTACCAAATGTTTCTGACTATGGATCTAACTTATAAAGAATA--CATATTATCACCTCACAGGACATGAATGCTCAGTGGC--AGATTT-GGAGGCCCTGCTGTAGGTGTTCGGAAGTTT----TGGTCCT-----TC----GAGTCCACATAATCTATTATTTAGAGTGTTTTAGGACATCACTCGTGGCCATAAAT i calJac3.chr3 C 0 C 0 s canFam3.chr3 3724477 407 - 91889043 ataggaaccta-----accctgtatatcctctaagagcaatggctcagtattggctgatgcagcatttgccatgacttcacagaacataaccactgcaaataatgagaactgacACTACATTTCCCTACTCTTAGACATTTACAAATTTTAATAGCTTTCTTAAGGTTCAAGTTAAGTCCTGAAA--AAAGCAAAACTAGTTTAACCTTCTTTAATCCATTATTTACCAAACA----GAACTATGGATCTAACTT-TAAGGAATATGCATATTATCACCTCACAGGACAGAGAT--TCAGGGGACAATGTTTCAAAGGCTCTGCTGTAGGCATTAAGAAGGTTTTTACATTTTTGTGTATATGTTGAGGCCACTTGGCTTACCATTTAGAGGATTTTACAACATCACTCATGACCATCAAT i canFam3.chr3 C 0 C 0 e mm10.chr5 49125169 3465 + 151834684 I e papAnu2.chr5 16295832 2457 + 178775436 I a score=284503.000000 s hg38.chr4_KI270790v1_alt 19512 134 + 220246 CAAGAGATGAggcctggcacggtggctcacgcctgtaatcccagcactttgggaggccgaggtgggtggatcacctgaggtcaggggtttgagaccagcctgtccaacatggtgaaac-----------------------------------------------------------------------------------------------atcatctctactaaaa s panTro4.chr4 21407039 134 + 193495092 CAAGAGATGAggcctggcatggtggctcacgcctgtaatcccagcactttgggaggccaaggtgggtggatcacctgaggtcaggggtttgagaccagcctgtccaacatggtgaaac-----------------------------------------------------------------------------------------------gtcatctctactaaaa i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21583219 134 + 198332218 CAAGAGATGAggccaggcacggtggctcatgcctataatcccagcactttgggaggctgaggtgggtggatcccctgaggtcaggggtttgagaccagcctgtccaacatggtgaaac-----------------------------------------------------------------------------------------------gccatctctactaaaa i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20195520 134 - 85365473 CAAGAGATGAggccaggcatggtggctcacgcctataatcccagcactttgggaggctgaggtgggtggatcacttgaggtcaggggtttgagaccagcctgtccaacacggtgaaac-----------------------------------------------------------------------------------------------gtcatctttactaaaa i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16660999 134 + 184069350 CAAGAGATGAggccagccacagtggctcacgcctgtaatcccagcactttgggaggccaaggtgggtggattacctgaagtcaggggtttgagactagcttgaccaacatggtgaaac-----------------------------------------------------------------------------------------------cccgtctctactaaaa i rheMac3.chr5 C 0 I 186 s macFas5.chr5 20703226 134 + 189454096 CAAGAGATGAggccagccacagtggctcacgcctgtaatcccagcactttgggaggccaaggtgggtggatcacctgaagtcaggggtttgagaccagcctgtccaacatagtgaagt-----------------------------------------------------------------------------------------------gtcatctctactaaaa i macFas5.chr5 C 0 C 0 s chlSab2.chr27 19784136 134 - 48547382 CAAGAGATGAggccagccacggtggctcacgcctgtaatcctagcactttgggaggtcaaggagggtggatcacctgaagtcaggggtttgaaaccagcctgtccaacatggtgaagt-----------------------------------------------------------------------------------------------gtcatctctactaaaa i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21137795 229 - 190850796 CAAGAGATGAggctgggcacagtggcacatgcctgtaatcccagaactttgggaggctgaggcaggtggatcatctgaggtcaggggttcaagaccagcctggccaacatgatgaaCTTATGAGAAGGATTCTggactgtgcagtggaggggcctgaagcctaagcttcattagctccactataaatctgactctACAAATCTGACACTATTAATcatctctactaaaa i calJac3.chr3 C 0 C 0 e mm10.chr5 49125169 3465 + 151834684 I e canFam3.chr3 3724884 0 - 91889043 C e papAnu2.chr5 16295832 2457 + 178775436 I a score=252601.000000 s hg38.chr4_KI270790v1_alt 19646 194 + 220246 atacaaaaatttgccaggcatggtggcgcatgcctgtaatcccagctacttgggaggctgaggtgggagaattgcttgaatccaggagacagaggttgcagctggccgagactg-tgccattgcactccagcctgagcaaca----gagtgagactccatcacaaaa---gaaaacaaaaaaaaaaaaaaaaagagagagag s panTro4.chr4 21407173 197 + 193495092 atacaaaaatttgccaggcatggtggcgcatgcctgtaatcccagctacttgggaggctgaggtgggagaattgcttgaatccaggagacagaggttgcagttggccgagactg-cgccattgcactccagcctgagcaaca----gagtgagactccatcacaaaaagagcaaaaaaaaaaaaaaaaaaaaaaaaaGAAAG i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21583353 152 + 198332218 atacaaaaattagctgagagtggtggcgcatgcctgtaatcccagctacttgggaggctgaggtgggagaatcggttgaacccaggaggcagaggttgcagttagccgagactg-tgccattgcactccagcctgagcaaca----gagtgagactc--------------------------------------------- i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20195654 169 - 85365473 atacaaaaattagctgagagtggtggtgcatgcctgtaatcccagctacttgggaggctgaggtgggagaatcgcttgaacccaggaggcagaggttgcagttggctgagactg-cgccattgcactccagcctgagcaaca----gagtgagactctacctcaaaa----------------------------aaaaaaa i nomLeu3.chr20 C 0 C 0 s macFas5.chr5 20703360 179 + 189454096 atacaaaaattagccaggcatggtggcgcatgcctgtaatcccagctacttaggaggctgaggtgggagaatctcttgaacccaggaggcagaggttgcagttagccgagattg-caccattgtactccagcctgggcaacagcgtgagtgagactccatctcggaa----------------------aaaaaaaaaaaaa i macFas5.chr5 C 0 C 0 s chlSab2.chr27 19784270 180 - 48547382 atacaaaatttagccaggcatggtggcgcatgcctgtaatcccagctacttgggaggctgaggtgggagaatcacttgaacccaggaggcagaggttgcagttagccgagattgttaccattgtactccagcctgggcaacagagcgagtgagactccatctcaaaa----------------------aaaaaaaaaaaaa i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21138024 176 - 190850796 atacaaaaataatctgggtgtggtggcacacacctgtaaccccagctacttgggaggctgaggtgggagaatcacttgaacctgggaggcagaggttgcagtgaaccaagattg-aaccactgcactccagcctgggcaaca------gtgagactccatctcgaaa-------------------aaaaaaaGAGAGAGAG i calJac3.chr3 C 0 C 0 e mm10.chr5 49125169 3465 + 151834684 I e rheMac3.chr5 16661133 186 + 184069350 I e canFam3.chr3 3724884 0 - 91889043 C e papAnu2.chr5 16295832 2457 + 178775436 I a score=7167.000000 s hg38.chr4_KI270790v1_alt 19840 6 + 220246 agagag s panTro4.chr4 21407370 6 + 193495092 AGAGAG i panTro4.chr4 C 0 C 0 s nomLeu3.chr20 20195823 6 - 85365473 agagag i nomLeu3.chr20 C 0 C 0 s macFas5.chr5 20703539 6 + 189454096 aaaaaa i macFas5.chr5 C 0 I 2 s chlSab2.chr27 19784450 6 - 48547382 aaaaag i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21138200 6 - 190850796 AGAGAG i calJac3.chr3 C 0 C 0 s canFam3.chr3 3724884 6 - 91889043 AAAGAT i canFam3.chr3 C 0 C 0 e mm10.chr5 49125169 3465 + 151834684 I e rheMac3.chr5 16661133 186 + 184069350 I e papAnu2.chr5 16295832 2457 + 178775436 I e ponAbe2.chr4 21583505 0 + 198332218 C a score=251517.000000 s hg38.chr4_KI270790v1_alt 19846 105 + 220246 aTG-AAAAAATTACAGAGATCCTAAGACATCTCTCATCCACTTGGCTATCAATATCAACCTGAGTTGGTACTGCAGTCTGATA-AAATTCCCAACTTGTTCTTTGAT s panTro4.chr4 21407376 105 + 193495092 ATG-AAAAAATTACAGAGATCCTAAGACATCTCTCATCCACTTGGCTATCAATATCAACCTGAGTTGGTACTGCAGTCTGATA-AAATTCCCAACTTGTTCTTTGAT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21583505 93 + 198332218 -------------cAGAGATTCTAAGACATTTCTCATCCACTTGGCTATCAATATCAACCTGAGTTGGTACTGCAGTCTGATA-AAATTCCCAACTTGTTCTTTGAT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20195829 105 - 85365473 atg-aaaaaaTTACAGAGATCCTAAGACATTTTTCATCCACTTGGCTATCAATATCAACCTGAGTTAGTACTGCAGTCTGATA-AAATTCCCAACTTGTTCTTTGAT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16661319 105 + 184069350 aTG-AAAAAATTATAGAAATCCTAAGACATTTCTCATCTACTTTGCTATCAAGATCAACCTGAGTTGGTACTGCAGTCTGATA-AAATTCTCAACTTGTTATTTGAT i rheMac3.chr5 I 186 C 0 s macFas5.chr5 20703547 105 + 189454096 ATG-AAAAAATTATAGAAATCCTAAGACATTTCTCATCTACTTTGCTATCAAGATCAACCTGAGTTGGTACTGCAGTCTGATA-AAATTCTCAACTTGTTATTTGAT i macFas5.chr5 I 2 C 0 s chlSab2.chr27 19784456 104 - 48547382 atg-aaaaaaTTA-AGAGATCCTCAGACATTTCTCATCTACTTTGCTATCAAGATCAACCTGAGTTGGTACTGAAGTCTGATA-AAATTCTCAACTTGTTCTTTGAT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21138206 107 - 190850796 ATGAAAAAAACTACAGAGATTCTAAGATATTTCTAATTCACTTGGCTATCAACAGCAACCTGAGTTGGTACCGCAGTCTGATAGAAATTCCCAACTTGTTCTTTGAT i calJac3.chr3 C 0 C 0 s canFam3.chr3 3724890 104 - 91889043 ATG-AAAGGATTCCAGTCTAATTAAAGTATTTCAAATATACTTGACTATC-ATACCAACCTGACTTGGTGCCAAAATCTGATA-GCTTTTCCACCCTGTGCTCTGAT i canFam3.chr3 C 0 I 1 e mm10.chr5 49125169 3465 + 151834684 I e papAnu2.chr5 16295832 2457 + 178775436 I a score=1694.000000 s hg38.chr4_KI270790v1_alt 19951 1 + 220246 T s panTro4.chr4 21407481 1 + 193495092 T i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21583598 1 + 198332218 T i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20195934 1 - 85365473 T i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16661424 1 + 184069350 T i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20703652 1 + 189454096 T i macFas5.chr5 C 0 C 0 s chlSab2.chr27 19784560 1 - 48547382 C i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21138313 1 - 190850796 T i calJac3.chr3 C 0 C 0 e mm10.chr5 49125169 3465 + 151834684 I e canFam3.chr3 3724994 1 - 91889043 I e papAnu2.chr5 16295832 2457 + 178775436 I a score=877695.000000 s hg38.chr4_KI270790v1_alt 19952 390 + 220246 AGTAGTGCTTCAGCCTTATCCCAATTTATTGACATTCCTATGCTGATAAACCT--------ACTCTTAC---CCTTTTCCTTTCCCTGAGGGAATGTTTATTCTAGTCTTAAACTTGAGCCAGGCAGTCAGGCTCTGGGAGTGAGTGG-----AGAGTTCACTGTATAAAAGAATGTCAAAGGTAACCTTTAAGGAACGCTGTG-CCACCTCcagagtcagatttatagtgaagttaacgaagcttaggcttcagacccctccactgcacagtccagtatcctacccaataaattctagcaaaatgttcaagtcatatagtcttataagctttctatttatttctt------ttc---------------------------------------ttttcttttc-aagacagggtctcactctgtcacccacactgga--gtgcagtggcataat s panTro4.chr4 21407482 390 + 193495092 AGTAGTGCTTCAGCCTTATCCCAATTTATTGACATTCCTATGCTGATAAACCT--------ACTCTTAC---CCTTTTCCTTTCCCTGAGGGAATGTTTATTCTAGTCTTAAACTTGAGCCAGGCAGTCAGGCTCTGGGAGTGAGTGG-----AGAGTTCACTGTATAAAAGAATGTCAAAGGTAACCTTTAAGGAACGCTGTG-CCACCTCcagagtcagatttatagtgaagttaacgaagcttaggcttcaggcccctccactgcacagtccagtatcctacccaataaattctagcaaaatgttcaagtcatatagtcttataagctttctatttatttctt------ttc---------------------------------------ttttcttttc-aagacagggtctcactctgtcacccacactgga--gtgcagtggcataat i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21583599 379 + 198332218 AGTAGTGCTTCAGCCTTATCCCAATTTATTGACGTTCCTACGCTGATAAACCT--------ACTCTTAC---CCTTTTCCTTTCCCTGAGGGAATGTTTATTCTAGTCTTAAACTTGAGCCAGGCAGTCAGGCTCTGGGAGTGAGTGG-----AGAGTTCACTGTATAAAAGAACGTCAAAGGTAACCTTTAAGGAACGCTGTG-CCACCTCcagagtcagatttatagtggagctaatgaagcttaggcttcaggcccctccactgcacagtccagcatcctacccaataaattctagcaaaatgttcaagtcatatagtcatataagtttcctatttatttctt------tt---------------------------------------------------aagacagggtctcactctgtcacccacactgga--gtgcagtggcataat i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20195935 392 - 85365473 AGTAGTGCTTCAGCCTTATCCCAATTTTTTGACGTTCCTATGCTGATAAACCT--------ACTCTTAC---CCTTTTCCTTTCCCTGAGGGAATGTTTATTCTAGTCTTAAACTTGAGCCAGGCAGTCAGGCTCTAGGAATGAGTGG-----AGAGTTCACTGTATAAAAGCATGTCAAAGGTAACCTTTAAGGAATGCTGTG-CCACCTCcagagtcagatttatagtggagcaaatgaagcttaggcttcaggcccctccactgcacagtccagcatcctacccaataaattctagtaaaatgttcaagtcatatagtcatataagtttcctatttatttctt------ttc---------------------------------------ttttcttttt-aagaccgggtctcactctgtcacccacacgtgattatgcagtggcgtaat i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16661425 389 + 184069350 AGTAGTGCTTTAGCCTTATCCCAATTTATTGATGTTCCTATGTGGATAAACCT--------ACTCTTAC---CCTTTTCCTTTCCCTGAGGGAAAGTTTATTCTAGTCTTGAACTTGAGCCAGGTAGTCAGGCTTTGGGAGTGAGTGG-----AGAATTCACTGTATAAAAGAATGTCAAAGGTAACCGTTAAGGAACTCTGCA-CCACCTGcagagtcagattcacagtggagttaatgaagcttaggcttcaggcccctccactacatagtccagcatcctacccaataagttctagcaaaatgttcaaatcatacagtcatataagtttctcatttatatctt------ttc---------------------------------------ttttcttttctaag--agagtctcactctgtcgcccacactgga--gtgcagtggcataat i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20703653 389 + 189454096 AGTAGTGCTTTAGCCTTATCCCAATTTATTGATGTTCCTATGTGGATAAACCT--------ACTCTTAC---CCTTTTCCTTTCCCTGAGGGAAAGTTTATTCTAGTCTTGAACTTGAGCCAGGTAGTCAGGCTTTGGGAGTGAGTGG-----AGAATTCACTGTATAAAAGAATGTCAAAGGTAACCTTTAAGGAACTCTGCA-CCACCTGcagagtcagattcacagtggagttaatgaagcttaggcttcaggcccctccactacatagtccagcatcctacccaataagttctagcaaaatgttcaaatcatacagtcatataagtttctcatttatatctt------ttc---------------------------------------ttttcttttctaag--agagtctcactctgtcgcccacactgga--gtgcagtggcacaat i macFas5.chr5 C 0 C 0 s chlSab2.chr27 19784561 430 - 48547382 AGTAGTGCTTTAGCCTTATCCCTATTTATTGATGTTCCTATGTGGACAAACCT--------ACTCTTAC---CATTTTCCTTTCCCTGAGGGAATATTTATTCTAGTCTTGAACTTGAGCCAGGCAGTCAGGCTTTGGGAGTGAGTGG-----AGAGTTCACTGTATAAAAGAATGTCAAAGGTAACCTTTAAGGAACGCTGCA-CCACCTGcagagtcagtttcatagtggagttaatgaagcttaggcttcaggtccctccaccgcacagtccagcatcctacccaggaagttctagcaaaatattcaagtcataCAGTCATATAAGTTTCTCATTTAtttctt------ttcctttccttttctttccttttcttttcttttctttcctttttttcttttctaagacagagtctcactctgtcacccacactgga--gtgcagtggcataat i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21138314 378 - 190850796 AGTAGTGTTTTAGCCTCATCCCAACTTACTGAAGTTCCTATGCTGATAAAC-----------CTCTTAC---CCTTTTCCTTTCCCTGAAAGAGTGTTTATTCTAGTCTTGAACTTGAGCCAGGCACTCCGGTTCTGGGAATGAGGGG-----AGAGTTCACT------------GTCAAAGGTAACCTTTAAGGAATGCTGCA-CCACCTGC--agtcagatttatagtggagctaatgaaggttcggcttcagtcccctccaccgcacagtctagcaacccaacca-taagttctaggaaaaccttcaagtcatacaatcatgtaagtttcttatttctttcttcttttcttc---------------------------------------ttcttttttt-tagataggctctcactctgttgcccacactgga--gtgcagtgacataat i calJac3.chr3 C 0 C 0 s canFam3.chr3 3724995 343 - 91889043 AGTTGTGCTTTAGACTCATTCTAATGCATTGGGATTTCTCTACTGCTGAACTTTTTACCTCTTTCTTACCTACTCTTTCATTTCCCTGAGAATATATCTGTTCTATTCCCAAATATAAGCC-TCTATCCATAATCTAGGGGGTGGTGGTGGCAGGAGTTCACTGTTAAAAAAA-----GAAAGTAACATTCAACATATACTGTACCCACATATagagtcaagtttacagtggagtgaacgaa---caggcttcaggtccctccctcacatagttc---accccatcca-tgggctctagcagcatgt-----tcacacagtcatatga----------------tt------ttc---------------------------------------taatatctag-aag--------------------------------gcaagatggtttaat i canFam3.chr3 I 1 C 0 e mm10.chr5 49125169 3465 + 151834684 I e papAnu2.chr5 16295832 2457 + 178775436 I a score=274969.000000 s hg38.chr4_KI270790v1_alt 20342 122 + 220246 cac-cctcactgtagctttgacttcctgggctcaagtgatcctcctgtataagcctcctgggtagctaggaacacaggcacctgccaccaggctcagctactttt-aaaatttttttgtagaga s panTro4.chr4 21407872 122 + 193495092 cac-cctcactgtagctttgacttcctgggctcaactgatcctcctgtgtaagcctcctgggtagctaggaacacaggcacctgccaccattctcggctactttt-aaattttttttgtagaga i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21583978 123 + 198332218 cacggctcactgtagctttgacttcctgggctcaagtgatcctcctgtataagcttcctgggtagctgggaacacaggcacctgccaccatgcttggctactttt-aaaatttttttgtagaga i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20196327 123 - 85365473 cacggctcactgtagctttgacttcctgggcttaagtgatcctcctgtataagcctcctgattagctaggaacacaggcacctgccaccatgctcggctactttt-aaaacttttttgtagaga i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16661814 124 + 184069350 cacagctcactgtagctttgacttcctgggctcaagtgatcctcctgtataagcctcctgaggagctagaaacacaggcacctgccaccatgctcagctacttttaaaaatttttttgtagaga i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20704042 124 + 189454096 cacagctcactgtagctttgacttcctaggctcaagtgatcctcctgtataagcctcctgaggagctagaaacacaggcacctgccaccatgctcagctacttttaaaaatttttttgtagaga i macFas5.chr5 C 0 C 0 s chlSab2.chr27 19784991 123 - 48547382 cacagcttactgtagctttgacttcctgggctcaagtgatcctcctgtataagcctcctgaggagctagaaacacaggcacctgccaccatgctcggctactttt-aaaatttttttgtagaga i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21138692 121 - 190850796 catagctcactgtagctttgacttcctgggctcaagtgatcctcctgtatgagccatctaagtagctaggaacagacacacctgccaccatgctcagctactttt-aaaacttttt--tagaga i calJac3.chr3 C 0 C 0 e mm10.chr5 49125169 3465 + 151834684 I e canFam3.chr3 3725338 0 - 91889043 C e papAnu2.chr5 16295832 2457 + 178775436 I a score=81161.000000 s hg38.chr4_KI270790v1_alt 20464 33 + 220246 tggagtctccttatgttgctcaggctcatcttc s panTro4.chr4 21407994 33 + 193495092 tggagtctccttatgttgctcaggctgctcttg i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21584101 33 + 198332218 tggagtctccttatgttgctcaggctgctcttg i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20196450 33 - 85365473 tggagtctccttatgttgctcaggctgctcttg i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16661938 33 + 184069350 tagagtctccttatgttgctcaggctgctcttg i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20704166 33 + 189454096 tagagtctccttatgttgctcaggctgctcttg i macFas5.chr5 C 0 C 0 s chlSab2.chr27 19785114 33 - 48547382 tggagtctccttatgttgctcaggccgctcttg i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21138813 33 - 190850796 tggagtctccttatatttctcaagctgctcttg i calJac3.chr3 C 0 C 0 s canFam3.chr3 3725338 29 - 91889043 tggaattagctgacatggct----ctcctcttc i canFam3.chr3 C 0 C 0 e mm10.chr5 49125169 3465 + 151834684 I e papAnu2.chr5 16295832 2457 + 178775436 I a score=18261.000000 s hg38.chr4_KI270790v1_alt 20497 5 + 220246 aactc s panTro4.chr4 21408027 5 + 193495092 aactc i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21584134 5 + 198332218 aactc i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20196483 5 - 85365473 aactt i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16661971 5 + 184069350 aactc i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20704199 5 + 189454096 aactc i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16298289 5 + 178775436 aactc i papAnu2.chr5 I 2457 C 0 s chlSab2.chr27 19785147 5 - 48547382 aactc i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21138846 5 - 190850796 aactc i calJac3.chr3 C 0 C 0 s canFam3.chr3 3725367 5 - 91889043 cactc i canFam3.chr3 C 0 C 0 e mm10.chr5 49125169 3465 + 151834684 I a score=431389.000000 s hg38.chr4_KI270790v1_alt 20502 142 + 220246 ctgggctcaagcaatcctccaacctcagcctccaaaaatgctaggattacaggcatgagccaccaagccccgcctaattttctaatatttagaaagtaagatagtttaactataattagttaatactgctccttttctgcta s panTro4.chr4 21408032 142 + 193495092 ctgggctcaagcaatcctctgacctcagcctccaaaaatgctaggattacaggcatgagccaccaagccccgcctaattttctaatatttagaaagtaagatagtttaactataattacttaacactgctccttttctgcta i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21584139 142 + 198332218 ctgggctcaagcaatcctccaaccttaggctccaaaaatgctaggattacaggcatgagccaccaagccctgtctaattttctaatatttagaaagtaagatagtttaactataattagttaacactgctacttttctgcta i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20196488 142 - 85365473 ctgggctcaagcaattctccaacctcagcctccaaaaatgctaggattacaggcatgagccaccaagccctgcctaattttctaatatttagaaagtaagatagtttaactataattagttaacactgctccttttctgcta i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16661976 142 + 184069350 ctgggctcaagcaatcctccaacctcagcctccaaaaatgctaggattacaggcatgagccaccaagccccacctaattttctaatatttagaaagtaagatagtttaactataattagttaacacggcttcgtttctgcta i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20704204 142 + 189454096 ctgggctcaagcaatcctccaacctcagcctccaaaaatgctaggattacaggcatgagccaccaagccccacctaattttctaatatttagaaagtaagatagtttaactataattagttaacacggcttcgtttctgcta i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16298294 142 + 178775436 ctgggctcaagcaatcctccaacctcagcctccagaaatgctaggattacaggtaggagccaccaagccccacctaattttctaatatttagaaAGTAACATAGTTTAACTATAATTAGTTAACACCACTTCGTTTCTGCTA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19785152 142 - 48547382 ctgggctcaagcagtcctccaacctcagcctccaaaagtgctaggattacaggcaggagccaccaagccccgccTAAttttctaatatttagaaagtaagatagtttaactataattagttaacaccacttcgtttctgcta i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21138851 142 - 190850796 ctaggctcaagcaatcctccatcctcagcctctaaaactgctgggattacaggcacgagccaccaagcccagccaaatgttctaatatttagaaagtaagatagtttaactagaattggttaacgctgctccctttctgcta i calJac3.chr3 C 0 C 0 e mm10.chr5 49125169 3465 + 151834684 I e canFam3.chr3 3725372 0 - 91889043 C a score=1167477.000000 s hg38.chr4_KI270790v1_alt 20644 382 + 220246 caagttttctatggcacgctttctttcatatcttttagacttgaaggcaactgtggacatttttagaatgcagctaagtaagagaacatgtagttttatttatg-ggttcata---gctttttatgtacagtcaggttatggatgagtgtcctagggtaggaatggcttccacagatgtgtctaccacccaatgtgccaactcatctagtgtcataattcaaaggcgacccaaaagtgaaatgagcatcactggaagtccccaa-ctctggaagaacaggaatagtggat-ggactgctcatttcaaagtcagttaagc------ctaat-aacttagagtcaaaaatattttaaggcttcaaaaatatatttttaaagacttg-aaaaaat-aact s panTro4.chr4 21408174 381 + 193495092 caagttttctatggcacgctttctttcatatcttttagacttgaaggcaactgtgggcatttt-agaatgcagctaagtaagagaacatgtaggtttatttatg-ggttcata---gctttttatgtacagtcaggttatggatgagtgtcctagggtaggaatggcttccacagatgtgtctacaacccaatgtgccaactcatctagtgtcataattcaaaggcgacccaaaagtgaaatgagcatcactggaagtccccaa-ctctggaagaacaggaatagtggat-ggactgctcatttcaaagtcagttaagc------ctaat-aacttagagtcaaaaatattttaagtcttcaaaaatatatttttaaagacttg-aaaaaat-aacg i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21584281 383 + 198332218 caagttttctacggcgcactttctttcatatcttttagacttgaaggcaactgtgggcatttttagaatgcagctaagtaagaaaaagtgttggttta-ttatg-gtttcata---gctttttatgtataatcaggttatggatgagtgtccta-ggtaggaatggcttccacaaatgtgtctactgccc-atgtgccaactcatctagtgtcataattcaaggtgACCCCAAAAGTGAAATGAGCATCACTGGAAGTCCCCAACCTCTGGAAGAACAGGAATAGTGGATGGGACTGCTCATCTCAAAGTCAGTTAAGC------CTAGTAAACTTAGAGTCAAAATATATTAAAGGCTTCAAAAAATATTTTTTAAAGACTTG-AAAAAATAAACT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20196630 381 - 85365473 caagttttctatggcatactttctttcatatcttttagacttgagggcaactgtgggcatttttagaatgcagctaagtaagagaacgtgtgggtttatttatg-ggttcata---ga-ttttatgcacaatcaggttatggatgagtgtcctagggtaggaatggcttccacaaatgtgtctaccacccaatgtgccaactcatctagcgtcataattcaaaggcgacccaaaagtgaaatgagtatcactggaagtccccaa-ctctggaagaataggaatagtggat-ggactgctcatttcaaagtcagttaagc------ctaga-aacttagagtcaaaaatattttaagccttcaaaaatatatttttaaagacttg-aaaaaat-aact i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16662118 382 + 184069350 caagttttctatggcacactttctttcttatcttttagacttgagggcaactgtgggcatttttagaatgtagctaagtaagagaaagggtaggtttatttata-ggtccata---gctttttatgtacaatcaggttatggacgagtgtcctacggtaggaatggcttccacaaatgtgtctaccacccaatgtgccaactcatctggcagcataattcaaaggtgacccaaaagtgaaatgagtatcactggaagtccccaa-ctctgggagaatatggatagtggat-ggactgctcatttcaaagtcagttaagc------ctagt-aacttggagtcaaaaatattttaagacttcaaaaatatatttttaaagacttg-aaaaaat-aact i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20704346 382 + 189454096 caagttttctatggcacactttctttcttatcttttagacttgagggcaactgtgggcatttttagaatgtagctaagtaagagaaagggtaggtttatttata-ggtccata---gctttttatgtacaatcaggttatggacgagtgtcctacggtaggaatggcttccacaaatgtgtctaccacccaatgtgccaactcatctggcagcataattcaaaggtgacccaaaagtgaaatgagtatcactggaagtccccaa-ctctgggagaatatggatagtggat-ggactgctcatttcaaagtcagttaagc------ctagt-aacttggagtcaaaaatattttaagacttcaaaaatatatttttaaagacttg-aaaaaat-aact i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16298436 382 + 178775436 CAAGTTTTCTATGGCAcactttctttcttatcttttagaCTTGAGGGCAACTGTGGGCATTTTTAGAATGTAGCTAAGTAAGAGAAAGGGTAGGTTTATTTATA-GGTCCATA---GCTTTTTATGTACAATCAGGTTATGGACGAGTGTCCTACGGTAGGAATGGCTTCCACAAATGTGTCTACCACCCAATGTGCCAACTCATCTGGCAGCATAATTCAAAGATGACCCAAAAGTGAAATGAGTATCACTGGAAGTCCCCAA-CTCTGGGAGAATATGGATAGTGGAT-GGACTGCTCATTTCAAAGTCAGTTAAGC------CTAGT-AACTtggagtaaaaaatattttaagacttcaaaaatatatttttaaagacttg-aaaaagt-aact i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19785294 382 - 48547382 caagttttctatggcacactttctttcttatcttttagacttgagggcaactgtgggcatttttagaatgtaactaagtaagacaaagggtaggtttatttata-ggtccata---gctttttatgtacaatcaggttatgggcgagtatcctacggtaggaatggcttccacaaatgtgtctaccagccaatgtgccaactcatctggcagcataattaaaagatgACCCAACAGTGAAATGAGTATCCCTGGAAGTCCCCAA-CTCTGGGAGAATATGCATAGTGgat-ggactgcacatttcaaagtcagttaagc------ctagt-aacttggagtcaaaaatattttaagacttcaaaaatatatttttaaagacttg-aaaaaat-aact i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21138993 336 - 190850796 caagtttcccatggcatactttctttaaggtcatttagacttgagggcaactgtgggaatttttagaatgcaactaagt----------gtaggtttgtttatg-ggttcata---gcaatttatgtacaatcaggttatggataaatgtcctagggtcagaatgacttccacaaatgtgtctatcatccaatgtaccaactcacctgacatcctaattcaagggtgACCCAAAAGTGGAATGAATATCATTG----------A--------AGAATATGGATAGTGgat-ggactgatcatttcaaagtcagttaagt------tttac-aacttggagtc--------------------aaaatatatttttaaagacttgaaaaaaat-gact i calJac3.chr3 C 0 C 0 s canFam3.chr3 3725372 385 - 91889043 caacttctgtatggcacactttctcctatggctctcagacttgggggcaaccatgatcatttttagaatccagttagg-----gaaagcttaggtttatttctgtgactcatgatcactttttatgtgtaatcaagtctcagatgacaatcctagtgtagaaatggcttcctcaaagttgactgccccccaatgtgtgaactcacctggtgccttgatataaaggtgacccaaaggtgatatgaacttctctggcagtccctaa-ccctggaagtatatggatactgTat-ggact-ctcattacaaagctgttcagacttgcaacttac-aacttggggccaaagatattttatg-catcaaaaatatatttctgaagattta-caagaaa-aact i canFam3.chr3 C 0 I 172 e mm10.chr5 49125169 3465 + 151834684 I a score=4932.000000 s hg38.chr4_KI270790v1_alt 21026 6 + 220246 -------------caaata------------------------------------- s panTro4.chr4 21408555 6 + 193495092 -------------caaata------------------------------------- i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21584664 6 + 198332218 -------------CAAATA------------------------------------- i ponAbe2.chr4 C 0 I 374 s nomLeu3.chr20 20197011 6 - 85365473 -------------caaata------------------------------------- i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16662500 6 + 184069350 -------------caaata------------------------------------- i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20704728 6 + 189454096 -------------caaata------------------------------------- i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16298818 6 + 178775436 -------------caaata------------------------------------- i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19785676 6 - 48547382 -------------caaata------------------------------------- i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21139329 6 - 190850796 -------------caaata------------------------------------- i calJac3.chr3 C 0 C 0 s canFam3.chr3 3725929 56 - 91889043 caaaggcacacgccaaaccactgtgccacccagggatccctacaagaaaaatttta i canFam3.chr3 I 172 C 0 e mm10.chr5 49125169 3465 + 151834684 I a score=663940.000000 s hg38.chr4_KI270790v1_alt 21032 212 + 220246 aaatcgagcttgaaaa-----tattcaaaagcttgagaaagctcaaatatatcattttaattacaatttataaacatgttttaaa--atttcaataaaatagcgaaaaatataaagctcttgattaggacgt-tatgaaattacctttattga-tatttataaagcaagttattaaagaagtgtggtagaatttagattaaagtaataatacaatgtaaaa s panTro4.chr4 21408561 213 + 193495092 aaatcgagcttgaaaa-----tattcaaaagcttgagaaagctcaaatatatcattttaattacaatttataaacatgttgtaaa-catttcaataaaatagtgaaaaatataaagctcttgattaggacgt-tatgaaattacctttattga-tatttataaagcaagttattaaagaagtgtggtagaatttagattaaagtaataatacaatgtaaaa i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21585044 214 + 198332218 aaatcgagcttgaaaa-tatttattcaaaagcttgagaaagctcaaatatatcattttaattacaatttataaacatgttgtaaaacatttcaataaaatagcgaagaatataaagctcttgattaggatgt-tatgaaattacctttattgattatttataaaacaagttgttaaagaagtatgttagaat-----ttaaagtaataatataacgtaaaa i ponAbe2.chr4 I 374 C 0 s nomLeu3.chr20 20197017 213 - 85365473 aaaacgagcttgcaaaatatttattcaaaagcttgagaaagctcaaatatatcatcttaattacaatttataaacatgttgtaaaacatttcaataaaatagcaaagaatataaagctcttgattaggatgt-tatgaaa-tacctttattga-tatttataaaacaagttattaaagaagtgtggtagaat-----ttaaagtaataatacaatgtaaaa i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16662506 214 + 184069350 aaaacgagcttgcaaaatatttattcaaaagcttgagaaagctcaaatacatcattttaattacaatttgtaaacatattgtaaaacatttcaataaaattgcaaagaatataaagctcttgattgggatat-tatgaaattacctttattga-catttataaaacaagttattgaagaagtgtagtagaat-----ttaaagtaataatacaatgtaaaa i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20704734 214 + 189454096 aaaacgagcttgcaaaatatttattcaaaagcttgagaaagctcaaatacatcattttaattacaatttgtaaacatattgtaaaacatttcaataaaattgcaaagaatataaagctcttgattaggatat-tatgaaattacctttattga-catttataaaacaagttattgaagaagtgtagtagaat-----ttaaagtaataatacaatgtaaaa i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16298824 216 + 178775436 aaatCGagtttgcaaaatatttattcaaaagctTGAGAAAGCtcaaatacatcattttaattaCAATTTGTAAACATGTTGtaaaacatttcaataaaattgCAAAGAATATAAAGCTCTTGATTAGGATAT-TATGAAATTatctttattga-tatttataaaacaagttatt---aAAGTGTGGTAGAATTTAGATTAAAGTAATAATACAATGTAAAA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19785682 219 - 48547382 aaaacaagcttgcaaaatatttattcaaaagcttgagaaagctcaaatgcatcattttaattacaatttgtaaacatgttgtaaaacatttcaataaaattgcaaagcatataaagctcttgattaggatat-tatgaaattacctttattga-tatttataaaacaagttcttaaagaagcatggtagaatttagattaaagtaataatacaatgtaaaa i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21139335 216 - 190850796 aaaacaagcttgcaaaatatttattcaaaagcttgagaaagctcaaatatatcattttacttataatttgttaacatgttgtaaaacatttcaataaaatagcaaagaatgtaaagctcttgattaggatgt-tatgaaattacctttattga-catt--ttaagcaagttattaaag-agtaccatagaatttaggctaaaataataatataatgtaaaa i calJac3.chr3 C 0 C 0 s canFam3.chr3 3725985 209 - 91889043 aaaacaggcttataaag----cattcaaaagcttgagaaagtccaaa-atgccattttaattgcaatttgaaaacatgtagca---cattccaataaaacagcaagaaat-tatagatcttgattatgatgtatatgaaataatttttgttgt-catctatagaatgaaaaattaaagaaatagaataaaatttagattaaa--aacaatactatatgagg i canFam3.chr3 C 0 I 255 e mm10.chr5 49125169 3465 + 151834684 I a score=188594.000000 s hg38.chr4_KI270790v1_alt 21244 109 + 220246 caaaagtgatcaaaat-aaaaagtgaaattgtgaacttacgaattacgttgcatgaagaagaaagttgtaatagcatc-----------aaatatatataaaaatatatatataaatatat s panTro4.chr4 21408774 109 + 193495092 caaaagtgatcaaaat-aaaaagtgaaattgtgaacttacgaattacgttgcatgaagaagaaagttgtaatagcatc-----------aaatatatacaaaaatatatatataaatatat i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21585258 109 + 198332218 caaaagtgatcaaaat-aaaaagtgaaattgtcaacttacaaattacgttgcatgaagaagaaagttgtaatagcatc-----------aaatatatatataaatatatatataaatatat i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20197230 120 - 85365473 caaaagtgattaaaat-aaaaagtgaaattgtcaacttacaaattacgttgcatgaagaagaaagttgtaatagcatcaaatacatataaaatatatatataaatatatatataaatatat i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16662720 68 + 184069350 caaaagtgatcaaaat-aaaaagtgaaattgtcaccttacaaattatgttgcatgaagaagaaagtt---------tc------------------------------------------- i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20704948 68 + 189454096 caaaagtgatcaaaat-aaaaagtgaaattgtcaccttacaaattatgttgcatgaagaagaaagtt---------tc------------------------------------------- i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16299040 67 + 178775436 CAAAAGtgatcaaaat-aaaaagtgaaattgtCAACTTACAAA-CATGTTGCATGAAGAAGAAAGTT---------TC------------------------------------------- i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19785901 68 - 48547382 caaaagtgatcaaaat-aaaaagtgaaattgtcatcttacaaattatgttgcatgaagaagaaagtt---------tc------------------------------------------- i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21139551 110 - 190850796 caaaagtgatcaaaataaaaaagtgaaactgtcaacttacaaattatgttacaccaagaagaaagttgtaatagcaat-----------atatatatatatatatatatatatatatatat i calJac3.chr3 C 0 I 516 e mm10.chr5 49125169 3465 + 151834684 I e canFam3.chr3 3726194 255 - 91889043 I a score=170556.000000 s hg38.chr4_KI270790v1_alt 21353 78 + 220246 ggaacacaccaaaagaaacaatcattagtacaagagagagaaatttttacaagaagtaatgaagaagctcttggattc s panTro4.chr4 21408883 78 + 193495092 ggaacacaccaaaagaaacaatcattagtacaagagagagaaatttttacaagaagtaatgaagaagctcttggattc i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21585367 78 + 198332218 ggaatacaccaaaagaaacaatcattagtacaagagagagaaatttttacaagaagtaatgaagaagctcttggattc i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20197350 76 - 85365473 ggaacacaccagaagaaacaatcattagtaca--agagagaaatttttacaagaagtaatgaagacactcttggattc i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16662788 71 + 184069350 -----acaccagaagaaacaatcattagtaca--agagagaaatttttaagagaagtaatgaagaagctcttggattc i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20705016 71 + 189454096 -----acaccagaagaaacaatcattagtaca--agagagaaatttttacgagaagtaatgaagaagctcttggattc i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16299107 73 + 178775436 -----ACACCAGAAGAAACAATCATtagtacaagagagagaaatttttacGAGAAGTAATGAAGAAGCTCTTGGATTC i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19785969 71 - 48547382 -----acaccagaagaaacaatcattagtaca--agagagaaattttaatgagaagtaatgaagaagctcttggattc i chlSab2.chr27 C 0 C 0 e mm10.chr5 49125169 3465 + 151834684 I e calJac3.chr3 21139661 516 - 190850796 I e canFam3.chr3 3726194 255 - 91889043 I a score=795404.000000 s hg38.chr4_KI270790v1_alt 21431 280 + 220246 agaatagtgaatctaagtaacaaagaggaataaataatgaatcaaataattacattaaaaattaatttcatgttgaaatgaaacaaagtactaacatttattaaaataac---aaaatgcaatacaccaccaaaatgagactatcagaagtaaactgt-tcaatgaatactgtcaattcaatgatgattttaaattaatgtacaacaaagcttaaaatgtcatgaaatattacaacttacgttactaaaggaaatcaatagacattcccaaatttgacaacaat s panTro4.chr4 21408961 280 + 193495092 agaatagtgaatctaagtaacaaagaggaataaataatgaatcaaataattacattaaaaattaatttcatgttgaaatgaaacaaattactaacattaattaaaataac---aaaatgcaatacaccaccaaaatgagactatcagaagtaaactgt-tcaatgaatactgtcaattcaatgatgattttaaattaatgtacaacaaagcttaaaatatcatgaaatattacaacttactttactaaaggaaatcaatagacattcccaaatttgacaacaat i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21585445 279 + 198332218 agaatagtgaatctaagtaatgaagaggaatatataatgaatcaaataattacataaaaaattaatttcatgttgaaatgaaacaaattactaacatttattaaaataacat-aaaatgcaatacaccaccaaaatgagactatcagaagtaaactgt-tcaatgaatactgtcaattcaatgatgattttaaattaatgtacaacaaagcttaaaatatcatcaaatattataacttacgttactaaaggaaatcaatagacattcccaaatttg---acaat i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20197426 282 - 85365473 agaatagtgaatctaagtaatgaagaggaataaataatgaatcaaatatttacataaaaaattaatttaatgtttaaatgaaacaaattactaacatttattaaaataacat-aaaatgctataaaccaccaaaatgagactatcagaagtaaactgt-ttaatgaatactgtcaattcaatgatgacttaaaattaatgtacaacaaagcttaaaatatcatgaaatattacaacttacgttactataggaaatcaatagacattcccaaatttgacaacaat i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16662859 280 + 184069350 agaatagagaatctaagtaatgtagagtaataaataatgaatcaaataattacataaaaaattaatttcatgttgaaatgaaataaattactaacattgattaaaataacataaaaatgcaatacaccaccaaaatgagactatcggaagtatactgt-ttaatgaatattgtcaattca---atgatttaaaattaatgtacaacaaagcttaaaatatcatgaaatactacaaattacattactgaaagaaatcaatagacattcccaaatttgacaacaat i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20705087 280 + 189454096 agaatagagaatctaagtaatgtagagtaataaataatgaatcaaataattacataaaaaattaatttcatgttgaaatgaaataaattactaacattgattacaataacataaaaatgcaatacaccaccaaaatgagactatcggaagtatactgt-ttaatgaatattgtcaattca---atgatttaaaattaatgtacaacaaagcttaaaatatcatgaaatattacaaattacattactgaaagaaatcgatagacattcccaaatttgacaacaat i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16299180 283 + 178775436 AGAGTAGAGAATCTAAGTAATGTAGAGtaataaataatgaatcaaataattacataaaaaattaatttcatgttgaaatgaaataaattactaACATTGAttacaataacataaaaatgcaatACACCACCAAAATGAGACTATTGGAAGTATACTGT-TTAATGAATATTGTCAATTCAATGATGATTTCAAATTAATGTacaacaaaacttaaaatatcaTGAAATATTACAAATTACATTACTGAAGGAAATCAATAGACATTCCCAAATTTGACAACAAt i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19786040 282 - 48547382 agaatagagaatctaagtaatatagagtaataaataatgaatcaaataattacat-aaaagttaatttcatgttgaaatgaaataaattactaacattgattacaataacataaaaatgcaatacaccaccaaaatgagactatcggaagtatactgc-ttaatgaatactgtcaattcaatgatgatttaaaattaatgtacaacaaagcttaaaatatcatgaaatattacaaattatattactgaaggaaatcaatagacattcccaaatttggcaacaat i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21140177 281 - 190850796 aaaaaagtgaatctaagtaatgaagaggaataaataatgaatcaaataattacattaaaaattaatttcatattaaaatgaaacaaattactaacattgattaaaataacataaaaacacagtacactaccaaaatgagattatcagcagtagacggtattaatgaatactgttaattcaatgatgacttaaaattaatgtacaacaaagcttaaaatatcatgaaatattacaacttatgttactaaagtaaatcaatagacgttcccaaatttc---acaat i calJac3.chr3 I 516 C 0 e mm10.chr5 49125169 3465 + 151834684 I e canFam3.chr3 3726194 255 - 91889043 I a score=1607321.000000 s hg38.chr4_KI270790v1_alt 21711 519 + 220246 cctaaaaatgtatataatattacaaataatgaattatgaagtaaaataaagctttcctattgacaataaaaaataaatgtttatcaactctgtgataagcctgaattatttttctatcttctatactaaaagtagtgcaaaatcattcaactttatgcaagcaagaaccaggaaaactatcacacagatctataaggcagctattttattttagaatgttactcttttaa-ttttttcatatgtatatcatttgtcagttttctaaaaactgtaatttcaaaattgatcattcctaatcctaact-----------attcatt-----ttt-acacttagttttatattttaagcatgta-t-ttttttttcataagagaatcctaaaactgtgtaatctctggaccccatgaaacctaaatttgctc---TACAATAGAGGTATTAGATGATGT--AAGTAAACTTCAAAGCCAATTCAA--AAACAGGGACCTAATACTGTTTATGTTGTTTGCTTTGTTGTAGCTAATATGTCAGCtgtgaaa s panTro4.chr4 21409241 520 + 193495092 cctaaaaatgtatataatattacaaacaatgaattatgaagtaaaataaagctttcctattgacaataaaaaataaatgtttatcaactctgtgataagcctgaattatttttctatcttctctactaaaagtagtgcaaaatcattcaacattatgcaagcaagaaccaggaaaactatcacacagatctataaggcacttattttattttagaatgttactcttttaa-ttttttcatatgtatatcatttgtcagttttctaaaaactgttatttcaaaattgatcattcctaatcctaact-----------attcatt-----ttt-acacttagttttatattttaagcatgta-tcttttttttcataagagaatcctaaaactgtgtaatctctggatcccatgaaacctaaatttgctc---TACAATAGAGGTATTAAATGATGT--AAGTAAACTTCAAAGCCAATTCAA--AAACAGGGACCTAATACTGTTTATGTTGTTTGCTTTGTTGTAGCTAATGTGTCAGCtgtgaaa i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21585724 520 + 198332218 cctaaaaatgtatataatattacaaataatgaattatgaagtaaaataaaactttcctattgacaataaaaaataaatgtttatcaactctgtgataagcctgaattatttttttatcttctctactaaaagtagtgcaaaatcattcaacattatgcaagcaagaaccaggaaaactatcacacagatctataaggcagttattttattttataatgttactcttttaa-ttttttcatatgtatatcatttgtcagttttctaaaagttgtaagttcaaaattgatcattcctaatcctaact-----------attcatt-----ttt-acacttagttttatagtttcagcatgta-ttttttttttcataagagggtcctaaaactgtgtaatctctggatcccataaaacctaaatctgctc---TACAATAGAGGTATTAAATGATAT--AAGTAAACTTCAAAGCCAATTCAA--AAACAGGGACCTAATACTGTTTATGTTGTTTGCTTTGTTGTAGCTAATGTGTCAGCtgtgaaa i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20197708 515 - 85365473 cctaaaaatgtatataatattacaaat----aattatgaagtaaaataaaactttcctatttacaataaaaaataaatgtttatcaactctgttataagcctgaattatttttctatcttctctactaaaagtagtgcaaaattattcaacattatgcaagcaagaaccaggaaaactatcacacagatctataaggcagttattttattttagaatgttactcttttaa-ttttttcatatgtacatcatttgtcagttttctaaaaattgtaatttcaaaattgataattcctaatcctaact-----------cttcatt-----ttc-acacttagttttatattttaagcatgtt-t-ttttttttcataagagagtcctaaaactgtgtaatctctggatcccataaaacctaaatccgctc---TACAATAGAGGTATTAAATGATGT--AAGTAAACTTCAAAGCCAATTCAA--AAACAGAGACCTAGTACTGCTTATGTTGTTTGCTTTGTTGTAGCTAACGTGTCAGCtgtgaaa i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16663139 518 + 184069350 cctaaaaatttatatcatattataaataatgaattatgaagtaaaataaaactttccaatttacaataaaaaataaatgtttatcaactctgttataagcctgaattatttttctatcctctctactaaaagcagtgcaaaatcattcaacattatgcaagcaagaaccaggaaaaatatcacacagatccataaggcagttattttactttagaacgttagtcttttaa-ttttttcatatgtatatcatttgtcagttttctaaaaattgtaatttcaaaattgataacttcaaatcctaact-----------gttcatt-----tct-acacttagttttatattttaaggatgcatt-ttttttttcataagagagtcctaaaac--tgtaaactctggatcccataaaacctaaatctgctc---TACAATAGAGGTATTAAATGATGT--AAGTAAACTTCAAAGTCAGTTCAA--AAACAGGGACCTAATACCCTTTATGTTGTTTGCTTTGTTGCAGCTAATGTGTCACCtgtgaaa i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20705367 518 + 189454096 cctaaaaatttatatcatattataaataatgaattatgaagtaaaataaaactttccaatttacaataaaaaataaatgtttatcaactctgttataagcctgaattatttttctatcctctctactaaaagcagtgcaaaatcattcaacattatgcaagcaagaaccaggaaaaatatcacacagatccataaggcagttattttactttagaacgttagtcttttaa-ttttttcatatgtatatcatttgtcagttttctaaaaattgtaatttcaaaattgataacttcaaatcctaact-----------gttcatt-----tct-acacttagttttatattttaaggatgcatt-ttttttttcataagagagtcctaaaac--tgtaatctctggatcccataaaacctaaatctgctc---TACAATAGAGGTATTAAATGATGT--AAGTAAACTTCAAAGTCAGTTCAA--AAACAGGGACCTAATACCCTTTATGTTGTTTGCTTTGTTGCAGCTAATGTGTCACCtgtgaaa i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16299463 505 + 178775436 cctaaaaatttat---atattataaataacgaattatgaagtaaaataaaactttcctatttacaataaaaaataaatgtttatcaactCTGTTATAagcctgaattatttt---------tctactaAAAGCAGTGCAAAGTCATTCAACATTGTGCAAGCAAGAACCAGGAAAAATATCACACAGATCCATAAGGCAGTTATATTACTTTAGAACgttagtcttttaa-ttttttcatatgtatatcaTTTGTCAGTTTTCTAAAAATTGTAATTTCAAAATTGATAACTTCAAATCCTAACT-----------GTTCATT-----TCT-Acacttagttttatattttaaggatgca-t-ttttttttcataagagaGTCCTAAAAC--TGTAATCTCTGGATCCCATAAAACCTAAATCTGCTC---TACAATAGAGGTATTAAATGATGT--AAGTAAACTTCAAAGTCAGTTCAA--AAACAGGGACCTAATACCCTTTATGTTGTTTGCTTTGTTGCAGCTAATGTGTCACCTGTGAAA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19786322 517 - 48547382 cctaaaaatttatataatattataaataatgaattatgaagtaaaataaaactttcctatgtacaataaaaaataaatgtttatcaactctgttataagcctgaattatttttctatcctctctactaaaagcagtgcaaaatcgttcaacattatgcaagcaagaaccaggaaaaatatcacacagatccataaggcagttattttactttagaacgttagtcttttaa-ttttttcgtatgtatatcatttgtcagttttctaaaaattgtaatttcaaaattgataacttcaaatcctaact-----------gttcatt-----tct-acacttagttttacattttaaggatgca-t-ttttttttcgtaagagagtcctaaaac--tgtaatctctggatcccatgaaacctaaatctgctc---TACAATAGAGGTATTAAATGATGT--AAGTAAACTTCAAAGTCAGTTCAA--AAACAGGGGCCTAATACCCTTTATGTTGTTTGCTTTGTTGCAGCTAATGTGTCACCtgtgaaa i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21140458 512 - 190850796 tctaaaaatttat---atattacaaaatatgaattatgaagcaaaataaaactttcctaattacaat-aaaaataaatgtttatcaactctgttataagcctgaattatttttctatcctctctactaaaaatattgcaaaatcattcaacattatgcaagcaagaactaggaaaaatatcatacagattcataagacagttattttattttggaatgtaa--cttttaa-ttttttcatatgtatataatttgtcagctttctacaaagtataatttcaaaattgataatttctaatcctacct-----------attcatt-----tttaacccttagttttctattttaagcatgta---ttccttttcataagagagtcttaaaactgtgtaatctctggatcccataaaacctaaatccgctc---TACAACAGAGGTATTAAGTG---T--AAGTAAACTTCAAAGCCAATTCAAGGAAACAGGGACCTGATACAGTTTATGTAGTTTGCTTTGTTGTAGCTCATGTGTCAGCtgtgaaa i calJac3.chr3 C 0 C 0 s canFam3.chr3 3726449 490 - 91889043 -cctaaaactaatacaacattat---tggccaattatatctcaaaaaaaaa-----------aaAATAAATAGTAAAGGTaaaataacac-------------------------------attacaaaatatattgcaaaattatcaaacagtatgcaagcaagaattaagaaaagtattatgcagatgaataaagcagaaaatata-ttcaaatttttattattttagtttttttcatatttatgtaatttgtcagctttctaaaact--tagttttgaaatttataattgcttatcctaaataaatttaggaaatttattttcacttt-acacttacttttatattttactcacatc-a-tctttctcttaaagggagtcctaaaac--tataggctcccgatcccacaaaatctaaatttgttcctgTTCAAGGGTAAGATTAAGTGATTTAAAAGTAAACTCCAAGGCCAGGCTAA--CCATAGTGATCTAGCAAAGTCGATGTAATTTGATTTGTCAGAGTTAATGTATCAGCTCTAAAA i canFam3.chr3 I 255 I 213 e mm10.chr5 49125169 3465 + 151834684 I a score=705681.000000 s hg38.chr4_KI270790v1_alt 22230 235 + 220246 ataagtaattcaaaatttaagct------gctggaactttaaaatattttgagcttaaagggaatgtgaactaaatctcataagcagacagttgtaaagtcagcaggtgtaacctttgtttctccgattacagattagccttttccttacctacattgtcttgtaaaatgttgcaaatgactaaagggtgccagggaagaagacctttttccttttaagtgttgattttcattatagatta s panTro4.chr4 21409761 235 + 193495092 ataactaattcaaaatttaagct------gctggaactttaaaatattttgagcttaaagggaatgtgaactaaatctcataagcagacagttgtaaagtcagcaggtgtaacctttgtttctccgattacagattagccttttccttacctacattgtcttgtaaaatgttgcaaatgactaaagggtgccagggaagaagacctctttccttttaagtgttgattttcattatagatta i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21586244 235 + 198332218 ataagtaattcaaaatttgagct------gctggaactttaaaatattttgagcttaaagggaatgtgaactaaatctcataagcagacagttgtaaattcagcaggtgtaacctttgtttctctgattatagattagccttttccttacctacaatgttttgtaaaatgttgcaaatgactaaagggtgccagggaagaagatctcttttcttttaagtgttgattttcattatagatta i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20198223 235 - 85365473 ataagtaattcaaaatttaagct------gctggaactttaaaatattttgagcttaaagggaatgtgaactaaatctcataagcagacagttgtaaagtcggcaggggaaacctttgtttctctgattatagattagccttttccttacctacattgttttgtaaaatgttgcaaatgactaaagagtgccagggaagaagacctctttccttttaagtgttgattttcattatagattg i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16663657 235 + 184069350 ataagtaattcacaattgaagct------gctggaactttaaagtattttgagcctaaagggaatgtgaactaaatctcataagcagacagttgtaaagtcagcaggtgtaacctttgtttctctgactacagattagccttttccttacctacactgttttgtaaaatgttgcaaatgactaaagggcgccagggaagaagacctctttcctttaaagtgttcattttcattatatatca i rheMac3.chr5 C 0 I 19 s macFas5.chr5 20705885 235 + 189454096 ataagtaattcacaattgaagct------gctggaactttaaagtattttgagcctaaagggaatgtgaactaaatctcataagcagacagttgtaaagtcagcaggtgtaacctttgtttctctgactacagattagccttttccttacctaaactgttttgtaaaatgttgcaaatgactaaagggtgccagggaagaagacctctgtcctttaaagtgttcattttcattatatatca i macFas5.chr5 C 0 I 19 s papAnu2.chr5 16299968 235 + 178775436 ATAAGTAATTCACAATTGAAGCT------GCtggaactttaaagtattttgagCCTAAAGGGAATGTGAACTAAATCTCATAAGCAGACATTTGTAAAGTCAGCAGGTGTAACCTTTGTTTCTCTGACTACAGATTAGCCTTTTCCTTACCTACactgttttgtaaaatgttgcAAATGACTAAAGGGTGCCAGGGAAGAAGACCTCTTTCCTTTAAAGTgttcattttcattatatatca i papAnu2.chr5 C 0 I 19 s chlSab2.chr27 19786839 235 - 48547382 ataagtaattcacaattgaagct------gctggaactttaaagtattttgagcctaaagggaatgtgaactaaatctcataagcagacagttgtaaagtcagcaggtgtaacctttgtttctctgactacagattagccttttccttacctacattgttttgtaaaatgttgcaaatgactaaagcgtgccagggaagaagacctctttccttttaagtgttcgttttcattatatatca i chlSab2.chr27 C 0 I 22 s calJac3.chr3 21140970 241 - 190850796 ataagtaattcaaaatttaagcgctttaaactggcgctttaaaatattttgagcctgaagggaatgcgaactaagtcacataagcagatggctgtaaagtcagtaagtgtatcctttgtttctctgattatatattagccttttccttacctacattgttttataaaatgttgcaaatgactaaagggtaccagggaagatgacctctttccttttaagtgttgattttcattatagatta i calJac3.chr3 C 0 C 0 e mm10.chr5 49125169 3465 + 151834684 I e canFam3.chr3 3726939 213 - 91889043 I a score=6908.000000 s hg38.chr4_KI270790v1_alt 22465 4 + 220246 cctt s panTro4.chr4 21409996 4 + 193495092 cctt i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21586479 4 + 198332218 cctt i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20198458 4 - 85365473 cctt i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16663911 4 + 184069350 catt i rheMac3.chr5 I 19 C 0 s macFas5.chr5 20706139 4 + 189454096 catt i macFas5.chr5 I 19 C 0 s papAnu2.chr5 16300222 4 + 178775436 catt i papAnu2.chr5 I 19 C 0 s calJac3.chr3 21141211 4 - 190850796 cttt i calJac3.chr3 C 0 I 778 e mm10.chr5 49125169 3465 + 151834684 I e chlSab2.chr27 19787074 22 - 48547382 I e canFam3.chr3 3726939 213 - 91889043 I a score=8148.000000 s hg38.chr4_KI270790v1_alt 22469 3 + 220246 cca s panTro4.chr4 21410000 3 + 193495092 cca i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21586483 3 + 198332218 cca i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20198462 3 - 85365473 cca i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16663915 3 + 184069350 cca i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20706143 3 + 189454096 cca i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16300226 3 + 178775436 cca i papAnu2.chr5 C 0 C 0 s calJac3.chr3 21141993 3 - 190850796 cca i calJac3.chr3 I 778 C 0 e mm10.chr5 49125169 3465 + 151834684 I e chlSab2.chr27 19787074 22 - 48547382 I e canFam3.chr3 3726939 213 - 91889043 I a score=2799036.000000 s hg38.chr4_KI270790v1_alt 22472 986 + 220246 tctttcttctctcacacatacttcatgactaccgcattgtctacgatggaatgttaaatatactcttaaattggaaaggaaataaaaataacctttatggataagaaaacgaaccataatttattaaattgttgtgactcctaaactagccttgtacaaaaaatgttataatactgttaaattgatttattttctgcctatataagcaagac----cttaacttttaacatctgagtactgatcccatttctctggagttcatattttccggatggtctttcccagctttttgcatgaataaactcttcaaacctggattctggtcctttcaattatttcaggctgacaTAGCATTGAAAAATAGAGTACCACTGACCTAGAGTCAGCCTATGAGAAATtctctctctgtctctttctctctctctctctctctctc------------------------acacacacacacaaacacatacaTAAAAAATTTAAGACATtgtattaactttatagctccacataacaaattaccaaaaattgagtagtttaaaataagtatctatttattatctcacagttctgtaggttggacgtctggacacacttgactgggttctctgctgagaatctcacaggctgaaatccaagtatagctggctgggctcttatctggaagttccaaggactaatccactttcatgctcattctggttgttggcagaagccaattccttgacattgtaggtctgaggtcacaattgcattgctagctgtcaaaccgggtgctgctctctgcaaccagaggctgccctgcattccttctcacacagagcctccatcttcaaaccttcaagtgcatcaagtccttTGCAAaacccttagttctgggaattgcccacccttttcctggaaaactcatgaataattcacctcttgtttaatgtgtaatcaagaatcataaaaatgggcaaccagcagctgttggggctgttctgcccatggagtagcca s panTro4.chr4 21410003 1008 + 193495092 tctttcttctctcacacatacttcatgactaccgcattgtctaagatggaatgttaaatatactcttaaattggaaaggaaataaaaataacctttatggataagaaaacgaaccataatttattaaattgttgtgactcctaaaccagccttgtacaaaaaatgttataatactgttaaattgatttgttttctgcctatataagcaagac----cttaacttttaacatctgagtactgatcccatttctctggagttcatattttccggatggtctttcccagctttttgcatgaataaactcttcaaacctggattctggtcctttcaattatttcaggttgacaTAGCATTGAAAAATAGAGTACCACTGACCTGGAGTCAGCCTATGAGAAATtctctctctgtctctttctctctctctctctctctctctctctctctctctcacacacacacacacacacacacaaacacatacaTAAAAAATCTAAGACATtgtattaactttatagctccacataacaaattaccaaaaattgagtagtttaaaataagtatctatttattatctca--gttctgtaggttggacgtctggacacacttgactgggttctctgctgagaatctcacaggctgaaatccaagtatagctggctgggctcttatctggaagttccaaggactaatccactttcatgctcattctggttgttggcagaagccaattccttgccattgtaggtctgaggtcacaattgcattgctagctgtcaaaccgggtgctgctctctgcaaccagaggctgccctgcattccttcccacacagagcctccatcttcaaaccttcaagtgcatcaagtccttTGCAAaacccttagttctgggaattgcccacccctttcctggaaaactcatgaataattcacctcttgtttaatgtgtaatcaagaaccataaaaatgggcaaccagcagctgttggggctgttctgcccatggagtagcca i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21586486 977 + 198332218 tctttcttctctcacatatacttcatgactattgcattgtctcatatggaatgttaaatatactcttaaattggaaaggaaataaaaataacccttatggataagaaaaggaaccataatttattaaattgttgtgactcctaaactagccttgtataaaaaatgttataatactattaaattgatctgttttctgcctatataagcaagac----cttaacttttaacatctgagtacggatcccacttctctggagtccatattttccggatggtctttcccagctttttgcttgaataaactcttcaaaactggattctgatcctttcaattatttcaggttgacaTAGCATTGAAAAATAGAGTACCA-TAACCTAGAGTCAGCCTATGAGAAATtctctctc--tctctttctctctctctctctctcac--------------------------acacacacacacaaacacatacaTAAAAAATTTAAGACACtgtattaattttatagctccacataacaaattaccaaaaattgagtagtttgaaataag----tatttattatctcacagttctgtaggttggacgtctggacacacttgactgggttctctgctgagaatctcacaggctgaaatccaattatacctggctgggctcttatctggaagttccaaggactaatccactttcatgctcattctggttgttggcagaagccaattccttgccattgtaggtctgaggtcacaattgcattgctagctgtcaaactgggtgctgctctctgcaaccagaggctgccctgcattccttctcacacagaccctccatcttcaaaccttcaagtgcatcaagtccttTGCAAaacccttagttctgggaattgcccacccctttcctggaaaactcatgaataattcacctcttgtttaatgtgtaatcaagagccataaaaatgggcaaccagcagctgttggggctgttctgcccatggagtagcca i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20198465 964 - 85365473 tctttcttctctcacacatacttcatgactatcgcattgtctcatatggaatcttaaagatactcttaaattggaaaggaaataaaaataacctttatggataaggaaaggaaccataatttattaaattgttgtgactcctaaactagctttgtacaaaaaatgttatactactattaaattgatttgctttctgcctatataagcaagaccttacttaacttgtaacatctgagtactgatcccacttctctggagtccatattttccggatggtctttcccagctttttgcttgaataaacccttcaaaactggattctgatcctttcgattatttcaggttgacGTAGCATTGAAAAATAGAGTACCA-TGACCTAGAGTCAGCCTATGAGAAATTCTCTCTC------------------Tcacacacac--------------------------acaaacacacataaacacatacaTAACAAATTTAAGACACtgtattaattttata-ctccacataacaaattaccaaaaattgagtagtttaaaataag----tatttattatctcacagttctgtaggttggacgtctggacacacttgactgggttctctgctgagaatctcacaggctgaaatccaagtatagctggctgggctcttatctggaagttccaaggactgatccactttcatgctcattctggttgttggcagaagccaattccttgtcattgtaggtctgaggtcacaattgcattgctagctgtcaaactggatgctgctctctgcaaccagagcctgccctgcattccttctcacacagatcctccatcttcaaaccttcaagtacatcaagtccttTGCAAaacccttagttctgggaactgcccacccctttcctggaaaactcatgaataattcacctcttgtttaatgtgtaatcaagaaccataaaaacgggcaatcagcagccgttggggctgttctgaccatggagtagcca i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16663918 952 + 184069350 tctttcttttctcacacatacttcatcactctcacattgtctaagacggaatgttaaatatactcttaaattggaaaggaaataaaataaaccggtatggataagaaaacgaaccataatttattaaattgttgtgactccc-----agccttg---------------aatactattaaatttatttgttttctgcctctataagcaagat----cttaacttttaacatctgagtactgatcccatttctctggagtccatattttctggatggtctttcccagctttttgcttgaataaactcttcaaaactggattctgatcctttcgattatttcaggttgacaTAGGTTTGAAAAATGGAGTAACACTGACCTAGAGTCAGCCTATGAGAAAT------------tctctctctctctctctctctctc--------------------------ACACACACACACAAACACATACATAAAAAATTTAAGACATtgtatttattttatagctccacataacaaattaccaaaaattgaggagtttaaaataagtatctatttattatctcacagttctgtaggttggacgtctggacacacttgactgggttctctgctgagaatctcacaggctgaaattcaagtatagctgggtgggctcttatctggaagttccaaggacgaatccactttcatgctcattctggttgttagcagaagccaattccttgccattgtaggtctgaggtcacaattgcattgctggctgtcaaactgggtgccgctctctgcagccagaggctgccctgcattccttctcacacagaccctccatctccaaaccttcaagtgcatcaagtccttTGCAAaacccttagttctgggacttgcccacccctttcctggaaaactcatgaataattcaccccttgtttaatgtgtaatcaagaaccataaaaacaggcaaccagcagctattggggctgctctgcccatggagtagcca i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20706146 964 + 189454096 tctttcttttctcacacatacttcatcactctcacattgtctaagacggaatgttaaatatactcttaaattggaaaggaaataaaataaaccggtatggataagaaaacgaaccataatttattaaattgttgtgactcct-----agccttg---------------aatactattaaatttatttgttttctgcctctataagcaagat----cttaacttttaacatctgagtactgatcccatttctctggagtccatattttctggatggtctttcccagctttttgcttgaataaactcttcaaaactggattctgatcctttcgattatttcaggttgacaTAGGTTTGAAAAATGGAGTAACACTGACCTAGAGTCAGCCTATGAGAAATtctctctctctctctctctctctctctctctctctc--------------------------acacacacacacaaacacatacaTAAAAAATTTAAGACATtgtatttattttatagctccacataacaaattaccaaaaattgaggagtttaaaataagtatctatttattatctcacagttctgtaggttggacgtctggacacacttgactgggttctctgctgagaatctcacaggctgaaattcaagtgtagctgggtgggctcttatctggaagttccaaggacgaatccactttcatgctcattctggttgttagcagaagccaattccttgccattgtaggtctgaggtcacaattgcattgctggctgtcaaactgggtgccgctctctgcagccagaggctgccctgcattccttctcacacagaccctccatctccaaaccttcaagtgcatcaagtccttTGCAAaacccttagttctgggacttgcccacccctttcctggaaaactcatgaataattcacctcttgtttaatgtgtaatcaagaaccataaaaacagacaaccagcagctattggggctgctctgcccatggagtagcca i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16300229 960 + 178775436 tctttcttttctcacACATACTTCATCACTCTCACATTGTCTAAGACGGAATGTTAAATATACtcttaaattggaaaggaaataaaataaaccgGTATGGATAAGAAAACGAAccataatttattaaattgttGTGACTCCT-----AGCCTTG---------------AATactattaaatttatttgttttctgcctctATAAGCAAGAC----CTTAACTTTTAACATCTGAGTACTGATCCCATTTCTCTGGAGTCCATATTTTCCAGATGGTCTTTCCCAGCTTTTTGCTTGAATAAACTCTTCAAAACTGGATTCTGATCCTTTGGATTATTTCAGGTTGACATAGGTTTGAAAAATGGAGTAACACTGACCTAGAGTCAGCCTATgagaaat------------tctctctctctcacacacacacac------------------acacacatacacacacacacaaacacatacataaaaaatttaagacattgtatttattttatagctccacataacaaattaccaaaaattgAGGAGTTTAAAATAAGTatctatttattatctcacagttctgtaggttggACGTCTGGACACACTTGACTGGGTTCTCTGCTGAGAATCTCACAGGCTGAAATTCAAGTATAGCTGGGTGGGCTCTTATCTGGAAGTTCCAAGGATGAATCCACTTTCATGCTCATTCTGGTTGTTAGCAGAAGCCAATTCCTTGCCATTGTAGGTCTGAGGTCACAATTGCATTGCTGGCTGTCAAACTGGGTGCCGCTCTCTGCAGCCAGAGGCTGCCCTGCATTCCTTCTCACACAGACCCTCCATCTCCAAACCTTCAAGTGCATCAAGTCCTTTGCAAAACCCTTAGTTCTGGGacttgcccacccctttcctggaaaactcatgaataattcaCCTCTTGTTTAATGTGTAATCAAGAACCATAAAAACAGGCAACCAGCAGCTACTGGGGCTGCTCTGCccatggagtagcca i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19787096 969 - 48547382 tctgtcttttctcacacatacttcatcactctcacattgtctaagacggaatgttaaatatactcttaaattggaaacgaaataaaataaaccggtatggataagaaaacgaaccataatttattaaattgttgtgactcct-----agccttg---------------aatactattaaatttatttgttttctgcctctataagcaagac----cttaacttttaacatctgagtactgatcccatttctctggagtccatattttccacatggtctttcccagctttttgcttgaataaactcttcaaaactggattctgatcctttcgattatttcaggttgacaTAGGTTTGAAAAATGGAGTAACACTGACCTAGAGTCAGCCTATGAGAAATtctctctctctctctctctctctctctctctctctc--------------acacacacacacacacacacacacaaacacatacaTAAAAAATTTAAGACACtgtatttattttatagttccacataacaaattaccaaaaattgaggagtttaaaataagtatctatttattatctcacagttctgtaggttggacgtctggacacacttgactgggttccctgctgagaatctcacaggctgaaatccaagtatagctgggtgggctcttatctggaagttccaaggacgaatccactttcatgctcattctggttgttagcagaagccaattccttgccattgtaggtctg-------aattgcattgctggctgtcaaaccgggtgctgctctctgcagccagaggctgccctgcattccttctcacacagaccctccatctccaaaccttcaagtgcatcaagtccttTGCAAaacccttagttctggttcttgcccacccctttcctggaaaactcatgaataattcacctcttgtttaatgtgtaatcaagaaccataaaaacaggcaaccagcagccattggggctgctctgcccatggagtagcca i chlSab2.chr27 I 22 I 599 s calJac3.chr3 21141996 963 - 190850796 tctttcttttctcacacatacttcatgactatcacattgtctaagatggaatgttaaatatactcttaaattagaaaggaaataaa---aacctgtatggataagaacacaaaccataatttattaagtttttgtgactcctaaaccagccttgtacaaaaaatgttataatactattaaatttatttgttttctgcctatataagcacgac----cttaacttttaacatctaagtactgaccccatttctctggagtccatattttccggatggtctttctcagttttttgcttcagtaacctcttcaaaactggattctgatcctttcagttatttcaggttgacaCAGCTTTGAAAAATAGAGTACCACTGACCTAGAGTCAACCTTTGAGAAATtctctctctctctctctctctctctctccccctctc--------------------------tctcACACATAC--------ACTTTAAAAGCTTAAGACATtgtatttattttatagctccacatcacaaattaccaaaaatttagtagtttaaatgaag----tatctattatctca--gttctgtaggttggacatctggacatacttgactggcttctctgctgagaatctcacagactgaaatccaagtgtagctggctgggctcttatctggaagttccaaggactaatccactttcatgctcattctggttgctgacagaagccaattccttgccattgtaggtctgagttcccaattggatttctggctgtcaagccaggtactgctctctccaaccagaggcttccctgcattccttctcac-tgaaccctccatcttcaaaccttcaagtgcatcaagtccttTGCAAAA-TTtcagttctgggaattgcccacccttttcct-aaaaactcatgaataattcatatcttgttt-ctgtgtaataaagaaccataaaaataggcaacaagcatcccttgaggctactctgcccatggagtatcca i calJac3.chr3 C 0 C 0 e mm10.chr5 49125169 3465 + 151834684 I e canFam3.chr3 3726939 213 - 91889043 I a score=13737.000000 s hg38.chr4_KI270790v1_alt 23458 6 + 220246 ttcttt s panTro4.chr4 21411011 6 + 193495092 ttcttt i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21587463 6 + 198332218 ttcttt i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20199429 6 - 85365473 ttcttt i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16664870 6 + 184069350 ttcttc i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20707110 6 + 189454096 ttcttc i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16301189 6 + 178775436 ttcttc i papAnu2.chr5 C 0 C 0 s calJac3.chr3 21142959 6 - 190850796 ttcttt i calJac3.chr3 C 0 C 0 e mm10.chr5 49125169 3465 + 151834684 I e chlSab2.chr27 19788065 599 - 48547382 I e canFam3.chr3 3726939 213 - 91889043 I a score=1617876.000000 s hg38.chr4_KI270790v1_alt 23464 542 + 220246 tattcctttactttcataataaacttgcttCAAATCTTTCTGGCTTGTTCTTCTGCCACTGGTTGGAGAAAGCTTTATACTTTTAAGTtgtcggaggcatttgaactagaacgactccatcttgaataggggctgggtaaaataaggctgagatctgctgggctgcattcccaggaggttaggcattctaagtcacaggatgaaataggaggtcagcacaagatatacatcaaaacccaccaaaagcaagatagcaaggagagtgacctctggtcgtcctcactgctcattatacgctaattataatgg--attagcatgttaaaagacactcccatgacagtttacaaatgtcatgacaatgtcaggaagttaccctacatggtctaaaaaggggaggaacactcagttctgggaattaaccacccctttcctggaaaactcattaataatccaccccttggataacatgtaatcaagaaccataaaaaagggcaatcagcagccctcggggctgctctgcccatggagtagccattctttta----- s panTro4.chr4 21411017 542 + 193495092 tattcctttactttcataataaacttgcttCAAATCTTTCTGGCTTGTTCTTCTGCCACTGGTTGGAGAAAGCTTTATACTTTCAAGTtgtcggaggcgtttgaactagaacgactccatcttgaataggggctgggtaaaataaggctgagatctgctgggctgcattcccaggaggttaggcattctaagtcacaggatgaaataggaggtcagcacaagatatacatcaaaacccaccaaaagcaagatggcaaggagagtgacctctggtcatcctcactgctcattatacgctaattataatgc--attagcatgttaaaagacactcccatgacagtttacaaatgtcatgacgatgtcaggaagttaccctacatggtctaaaaaggggaggaacactcagttctgggaattaaccacccctttcctggaaaactcattaataatccaccccttggataacatgtaatcaagaaccataaaaaagggcaatcagcagccctcggggctgctctgcccatggagtagccattctttta----- i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21587469 540 + 198332218 tattcctttgctttcataataaacttgcttcaaatctttctggcttgttcttctgccactgattggagaaagctttatactttcaagTtgtcggaggcgtttgaactagaacgactccatcttgaataggggctgggtaaaataaggctgagatctgctgggctgcattcccaggaggttaggcattctatgtcacaggatgaaataggaggtcagcacaagatatagatcaaaacccaccaaaagcaagatggcaaggagagtgacctctagtcgtcctcactgctgattataagctaattataatgc--attagcatgttaaa--acactcccatgacagtttacaaatgtcatgacaatgtcaggaagttaccctacgtggtctaaaaaggggaggaacactcagttctgggaattaaccacccctttcctggaaaactcattaataatccaccccttggataacatgtaatcaagaaccataaaaaagggcaatcagcagccctcagggctgctctgcccatggagtagccattctttta----- i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20199435 542 - 85365473 tattcctttactttcataataaacatgcttCAAATCTTTCTGGCCTGTTCTTCTGCCACTGGTTGGAGAAAGCTTTATACTTTCAAGTtgttggaggcgtttgaactagagcgactccatcttgaataggggctgggtaaaataaggctgagatctgctgggctgcattccgaggaggttaggcattttaagtcacaggatgaaataggaggccagcgcaagatatagatcaaaacccacgaaaagcaagatggcaaggagagtgacctctggtcatcctcactgctcattacatgctaattataatgc--attagcatgttaaaagacactcccatgacagtttacaaatgtcatgacaatgtcaggaagttaccctatatggtctaaaaaggagaggaacactcagttctgagaattaaccacccctttcctggaaaactcattaataatccaccccttggataacgtgtaatcaagaaccataaaaaagggcaatcagcagcccttggggctgctctgcccatggagtagccattctttta----- i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16664876 537 + 184069350 tattcctttactttcttaataaacttgcttCAAATCTTTCTGGCCTGTTCTTCTGCCACTGGTTGGGGAAAGCTTTATACTTTCAAG--gtcggaggcgtttgaactagagcaactccatcttgaataggggctgggtaaaataaggctgagacctgctgggctgcattcccaggaggttagacattctaagtcacaggatgaaatagggggagagcacaagatatagatcaaaacccactaaaaccaagatggcaag--gagtgacctctggtcgtcctcactgctcattatacgtgaattataatgc--attagcatgttaaaagacactcccatgacaatttacaaatgtcatgacaatgtcaggaagttaccctatatggtctaaaaaggggaggaacactcagttctgggaatcaaccacccctttcctggaaaactcattaataatccaccccttggataacgtgcaatcaagaaccataaaaaagggcaatcagcagcccttggggctgctctgcccat-gagtagccattctttta----- i rheMac3.chr5 C 0 I 345 s macFas5.chr5 20707116 537 + 189454096 tattcctttactttcttaataaacttgcttcaaatctttctggcctgttcttCTGCCACTGGTTGGGGAAAGCTTTATACTTTCAAG--gtcagaggcgtttgaactagagcaactccatcttgaataggagctgggtaaaataaggctgagacctgctgggctgcattcccaggaggttagacattctaagtcacaggatgaaatagggggagagcacaagatatagatcaaaacccactaaaaccaagatggcaag--gagtgacctctggtcatcctcactgatcattatacgtgaattataatgc--attagcatgttaaaagacactcccatgacaatttacaaatgtcatgacaatgtcaggaagttaccctatatggtctaaaaaggggaggaacactcagttctgggaatcaaccacccctttcctggaaaactcattaataatccaccccttggataacgtgtaatcaagaaccataaaaaagggcaatcagcagcccttggggctgctctgcccat-gagtagccattctttta----- i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16301195 539 + 178775436 tattcctttactttcttaataaacttgcttcaAATCTTTCTGGCCTGTTCTTCTGCCACTGGTTGGGGAAAGCTTTATACTTTCAag--gtcagaggcatttgaactagagcaactccatcttgaataggggctgggtaaaataaggctgagacctgctgggctgcattcccaggaggttagacattctaagtcacaggatgaaataGGGGGAGAGCACAAGATATAGATCAAAACCCactaaaaccaagatggcaaggagagtgacctctggtcatcctcactgctcattatacatgaattataatac--attagcatgTTAAAAGACACTCCCATGACAATTTACAAATGTCAtgacaatgtcaggaagttaccctatatggtctaaaaaggggaggaacacTCAGTTCTGGGAATCAACcatccctttcctggaaaactcattaATAATCCACCTCTTGGATAACGTGTAATCAAGAACCATAAAAAAGGGCAatcagcagcccttggggctgctctgcccat-gagtagccattctttta----- i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19788664 538 - 48547382 tattcCTTTACTTTCTTAATAAACTTGCTTCAAATCTTTCTGGCCTG---TTCTGCCACTGGTTGGGGAAAGCTTTATACTTTCAAGGtgtcggaggcgtttgaactagagcaactccatcttgaataggggctgggtaaaataaggctgagacctgctgggctgcattcccaggaggttagacattctaagtcacaggatgaaacagggggagagcacaagatatagatcaaaacctactaaaaccaagatggcaaggagagtgacctctggtcgtcctcactgctcattatatgtgaattataatgc--attagcatgttaaaagacagtcccatgacaatttacaaatgtcatgacaatgtcaggaagttaccctatatggtctaaaaaggggaagaacactcagttttgagaattaaccacccctttcgtggaaaactcattaataatctaccccttggataacgtgtaatcaagaaccataaaaaagggtaatcggcagcccttggggctgctctgcccat-gagtagccattctttta----- i chlSab2.chr27 I 599 C 0 s calJac3.chr3 21142965 548 - 190850796 cgttcctttgctttcttaataaacttgcttcaaatctttctggcctgttcttCTGCCACTTGTTGGAGAAAGTTTGACACTTTCAAAAtgtcagaggcatttgaactagagcgacttcatcttgaataggggctgggtaaaataaaactgagacctgatgggctgcattcccaggaggttaggctttgtaagtcacaggataaagtaggaggtcatcacaagatatagatcaaaactcaccaatatcaagatggcaaggaaagtgacctctggtcatcctcgctgctcattatatactaattattatagtaattagcatgtaaaaacacattcccatgacagtttacaaatgttataacaatgtcaggaagttaccctatatggtctaaaaaggagaggaaccctcagttctgggaatagcccacccctttccaggaaaacttataaataatccacttcttggataatgtgtaatcaagaacaacaaaaaagggcaagtagcag-ccttggggctgctctgtccattgagtagccattccattatctta i calJac3.chr3 C 0 C 0 e mm10.chr5 49125169 3465 + 151834684 I e canFam3.chr3 3726939 213 - 91889043 I a score=37425.000000 s hg38.chr4_KI270790v1_alt 24006 15 + 220246 ttcctttactttctt s panTro4.chr4 21411559 15 + 193495092 ttcctttactttctt i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21588009 15 + 198332218 ttcctttactttctt i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20199977 15 - 85365473 ttcctttactttctt i nomLeu3.chr20 C 0 C 0 s macFas5.chr5 20707653 15 + 189454096 ttccttcactttctt i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16301734 15 + 178775436 ttccttcactttctt i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19789202 15 - 48547382 ttccttcactttctt i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21143513 15 - 190850796 ttcctttactttctt i calJac3.chr3 C 0 I 5 e mm10.chr5 49125169 3465 + 151834684 I e rheMac3.chr5 16665413 345 + 184069350 I e canFam3.chr3 3726939 213 - 91889043 I a score=976312.000000 s hg38.chr4_KI270790v1_alt 24021 564 + 220246 ttttt-attattattacactttaagttctgggttacatgtgcagaacgtgcagttttattacatggctatacacgtgccatggtggtttgctgcacccatcaacctgtcacctacattaggtatttgtcctaatgctctccctcccctagcccccaaacccacgacaggccc-ggtgagagatattcccctccctgtgtccatgtgttctcattgttcaactcccacttatgagggagaacacgtagtgtttggttttctgttcctgtgttagtttgctgagaatgatggtttccagcttcatccatatccctgcaaaggacatgaactcatc-cttttttatggctgcatagtattccatggtgtatatgtgcc-cattttctttattcagtctatcactgatggacatttgggttggttccaagtctttgctattgtgaatagtgctgcaataaacat-acgtgtgcgtgtgtctttatggtagaatgatttataatctctaaggtatatacccagtaatgggattgctgggt-caaatggtatttctagttctagatccttcaggaa s panTro4.chr4 21411574 566 + 193495092 ttttttattattattacactttaagttctgggttacatgtgcagaacgtgcagttttattacatggctatacacgtgccatggtggtttgctgcatccgtcaacctgtcacctacattaggtatttgtcctaatgctctccctcccctagcccccaaacccacgacaggccccggtgtgtgatattcccctccctgtgtccctgtgttctcattgttcaactcccacttatgagggagaacacgtagtgtttggttttctgttcctgtgttagtttgctgagaatgatggtttccagcttcatccatatccctgcaaaggacatgaactcatc-cttttttatggctgcatagtattccatggtgtatatgtgcc-cattttctttattcagtctatcactgatggacatttgggttggttccaagtctttgctattgtgaatagtgccgcaataaacat-acgtgtgcgtgtgtctgtatggtagaatgatttataatctctaaggtatatacccagtaatgggattgctgggt-caaatggtatttctagttctagatccttcaggaa i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21588024 565 + 198332218 ttttt-attattattacactttaagttctgggttacatgtgcagaacgtgcagttttattacatggctatacacgtgccatggtggtttgctgcacccatcaacctgtcacctacattaggtatttgtcctaatgctatccctcccctagcccccaatcccacgacaggccccggtgtgtgatgttcccctccctgtgtccatgtgttctcattgttcaactcccacttatgaaggagaacatgtagcatttggttttctgttcctgtgttagtttgctgagaatgatggtttccagcttcatccatatccctgcaaaggacatgaactcatc-cttttttaaagctgcacagtatcctatggtgtatatgtgcc-cattttctttattcagtctatcactgatggacatttgggttggttccaagtctttgctattgtgaatagtgccgcaataaacat-acgtgtgcatgtgtctttatggtagaatgatttataatctctaatgtatatacccagtaatgggattgctgggt-caaatggtatttctagttctagatccttgaggaa i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20199992 565 - 85365473 ttttt-attattattacactttaagttctgggttacatatacagaacgtgcagttttattacatggccatacacgtgccatggtggtttgctgcactcatcaacctgtcacctacatta-gtatttgtcctaatgctatccctccactagcccccaaccccacgacaggccccggtgtgtgatgttcccctccctgtgtccatgtgttctcattgttcaactcccacttatgagggagaacacgtagtgtttggttttctgttcctgtgttagtttgctgagaatgatggcttccagcttcatccatatccctgcaaaggacatgaactcatc-cttttttatggctgcatagtgttccatggtgtatatgtgcc-cattttctttattcagtgtagcattgatggacatttgggttggttccaagtctttgctattgtgaatagtgccacaataaacataacgtgtgcgtgtgtctttatggtagaatgatttataatatttaaggtatgtacccagtaatgggattgctgagt-caaatggtatttctagttctagatccttgaggaa i nomLeu3.chr20 C 0 C 0 s macFas5.chr5 20707668 552 + 189454096 ttttt-attattat---actttaagttctggggtacatgtgcagaacgtgcagttttgttacatgggtatacatgtgccatggt-gtttgttgcacccatcaacccatcacctacattaggtatttgtcctaatgctctccctcccctaacccccaacccc-cgacaggccccagtgtgtgatgttcccctccctgtgtccatgtgttctcattgttcaactcccacttataagtgagaacatgcggtgtttggttttctgttcctgtgttagtttgctgagaataatggtttccaacttcacccatgtccctgcaaaggacatgaactcatcttttttttatggctgcatagcattccatggtgtatatgtgccacattttctttattcagtctatcattgatggacatttgggttggttccaagtctttgctattgtgaatagtgccacaataaacat-acgtgtgcatgtgtcttt--------atgatttataatctctaaggta--tacccagtaatgggattgctgggt-caaatggtagttctagttgtagatccctgaggaa i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16301749 561 + 178775436 ttttt-attattat---actttaagttctggggtacatgtgcagaacgtgcagtttcgttacatgggtatacatgtgccatggtggtttgctgcacccatcaacccgtcacctacattaggtatttgtcctaatgctctccctcccctaacccccaacccc-cgacaggccccagtgtgtgatgttcccctccctgtgtccatgtgctctcactgttcaactcccacttataagtgagaacatgcggtgtttggttttctgttcctgtgttagtttgctgagaatgacggtttccaacttcacccatgtccctgcaaaggacaagaactcatc-cttttttatggctgcatagcattccatggtgtatatgtgctacattttctttattcagtctatcattgatggacatttgggttggttccaagtctttgctattgtgaatagtgccacaataaacat-acgtgtgcatgtgtctttatggtagaatgatttataatctctaaggta--tacccactaatgggattgcttggtccaaatggtatttctagttctagatccttgaggaa i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19789217 560 - 48547382 ttttt-attattat---actttaagttctggggtacatgtgtagaatgtgcagtttcgttacatgggtatacatgtgccatggtggtttgctgcacccatcaacccgtcacctacattaggtatttgtcctaatgctctccctcccctaacccccaacccc-caacaggccccagtgtgtgatgttcccctccctgtgtcaatgtgttcccattgttcaactcccacttataagtgagaacatgcggtgtttggttttctgttcctgtgttagtttgctgagaatgatggttttcaacttcacctatgtccctgcaaaggacatgaactcatc-cttttttatggctgcatagcattccatggtgtgtatgtgctacattttctttattcagtctatcattgatggacatttgggttggttccaagtctttgctattgtgaatagtgccacaataaacat-acgtgtgcatgtgtctttatggtagaatgatttataatctctaaggta--tacccagtaatgggattgcttggt-caaatggtatttctagttctagatcctcgaggaa i chlSab2.chr27 C 0 C 0 e mm10.chr5 49125169 3465 + 151834684 I e rheMac3.chr5 16665413 345 + 184069350 I e calJac3.chr3 21143528 5 - 190850796 I e canFam3.chr3 3726939 213 - 91889043 I a score=120831.000000 s hg38.chr4_KI270790v1_alt 24585 50 + 220246 ttgccacactgtcttccacaatggttgaactaatgtacactcccaccaac s panTro4.chr4 21412140 50 + 193495092 ttgccacactgtcttccacaatggttgaactaatgtacactcccaccaac i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21588589 50 + 198332218 ttgccacaccgtcttccacaatggttgaactaatgtacactcccaccaac i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20200557 50 - 85365473 ttgccacactgtcttccacaatggttgaactaatgtacactcccaccaac i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16665758 50 + 184069350 ttgtcacactgtcttccacaatggttgaactcatttacactcccaccaac i rheMac3.chr5 I 345 C 0 s macFas5.chr5 20708220 50 + 189454096 ttgtcacactgtcttccacaacggttgaactcatttacactcccaccaac i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16302310 50 + 178775436 ttgtcacaccgtcttccacaatggttgaactcatttacacccccaccaac i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19789777 50 - 48547382 ttgtcacaccgtcttccacaatggttgaactcatttacactcccaccaac i chlSab2.chr27 C 0 C 0 e mm10.chr5 49125169 3465 + 151834684 I e calJac3.chr3 21143528 5 - 190850796 I e canFam3.chr3 3726939 213 - 91889043 I a score=360135.000000 s hg38.chr4_KI270790v1_alt 24635 121 + 220246 acttgctttcactttactctatggacttgccttgaattctttcttatgcgagacctaagaaccctttattggggttttgatcaggatctcttcttggATAATAAAGGAATTATAGGACTAG s panTro4.chr4 21412190 121 + 193495092 acttgctttcactttactctatggacttgccttgaattctttcttatgtgagacctaagaaccctttattggggttttgatcaggatctcttcttggATAATAAAGGAATTATAGGACTAG i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21588639 121 + 198332218 acttgctttcactttactctatggacttgccttgaattctttcttatgtgagacctaagaaccctctattggggttttcatcaggatctctttttggATAATAAAGGAATCATAGGACTAG i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20200607 121 - 85365473 acttgctttcactttactctatggacttgccttgaattctttcttatgtgagacctaagaaccctctgttggggttttgatcaggatctctttttggATAGTAAAGTAATCATAGGACTAG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16665808 121 + 184069350 acttgctttcactttactttatggatttgccttgaattatttcttatgtgagacctaagaaccctctattggagttttgatcaggatctcttttcagATAATAAAGGAATCATAGGACTAG i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20708270 121 + 189454096 acttgctttcactttactttatggatttgccttgaattatttcttatgtgagacctaagaaccctctattggagttttgatcaggatctcttttcagATAATAAAGGAATCATAGGACTAG i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16302360 121 + 178775436 acttgctttcactttactttaTGGATTTGCCTTGAATTATTTCTTATGTGAGATCTAAGAACCCTCTATTGGGGTTTTGATCAGGATCTCTTTTCAGATAATAAAGGAATCATAGGACTAG i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19789827 121 - 48547382 acttgctttcactttactttatggatttgccttgaattctttcttaggtgagatctaagaaccctctattggggttttgatcaggatctcttttcagATAATAAAGGAATCATAGGACTAG i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21143533 116 - 190850796 acttgttttcactt-----tatggacatgccttgaattctttcttgtgtgagatctaagaactctctgttggggtttgaatcaggacctcttttccgataacaAAGGAATCATAGGACTAG i calJac3.chr3 I 5 C 0 e mm10.chr5 49125169 3465 + 151834684 I e canFam3.chr3 3726939 213 - 91889043 I a score=249165.000000 s hg38.chr4_KI270790v1_alt 24756 84 + 220246 ATTTAAtcacaagattagattagacccactcacataattttgctatttgaaggtcaatcattggggac-------ctataatcatagcaat s panTro4.chr4 21412311 84 + 193495092 ATTTAAtcacaagattagattagacccactcacataattttgctatttgaaggtcaatcattggggac-------ctataatcatagcaat i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21588760 84 + 198332218 ATTTAAtcacaagattagattagacccactcacataattttgctatttgaaggtcaatcattggggac-------ctataatcacagcaat i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20200728 84 - 85365473 ATTTAAtcacaagattagattagacccactcacataattttgctgtttgaaggtcaatcattggggac-------ctataatcacagcaat i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16665929 82 + 184069350 ATTTAATCACAAGATTAGATTAGACCAACTCACATAATTTTGCTATTTGAAGGTCAATCATT--AGac-------ctagaatcacagcaat i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20708391 82 + 189454096 ATTTAATCACAAGATTAGATTAGACCCACTCACATAATTTTGCTATTTGAAGGTCAATCATT--AGac-------ctagaatcacagcaat i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16302481 82 + 178775436 ATTTAATCACAAGATTAGATTAGACCCACTCACATAATTTTGCTATTTGAAGGTCAATCATT--AGAC-------CTAGAATCACAGCAAT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19789948 82 - 48547382 ATTTAATCACAAGATTAGATTAGACCCACCCACATAATTTTGCTATTTGAAGGTCAATCATT--AGac-------ctaaaatcacagcaat i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21143649 81 - 190850796 ATTTAAtcacaagattagattagacccac-caggtaattttgctactttaaggtcagccatt--ggac-------ctataatcacagcaat i calJac3.chr3 C 0 C 0 s mm10.chr5 49128634 85 + 151834684 ACTGACTCATAGGATTGTATCAGACCAGTCCAAGTTAT----CTACCTCATTGTCTGCTGTG--ACACAAGTGTAATACAATTATAAAGAT i mm10.chr5 I 3465 C 0 e canFam3.chr3 3726939 213 - 91889043 I a score=846599.000000 s hg38.chr4_KI270790v1_alt 24840 252 + 220246 gacatttcaccatattcttaggttct-acccacaatt-----------attttgcaagggtgaggggttattgggggccattcttagaattctTAGAATTCTCACAGACTTTCTATCAGGATTACAAGAT--TTATATTGA--ATGGGTAGTCTAAACTAAGGAAAAGCAAAAAGTTGAC-TCTTCACAGGGAGTT-TGAGCCCTAGTTCATATAAAGCAAAGAAAATAAA--TCAGAGATAGCAAG-AGACCAAGACAGATAGATGTAATTC- s panTro4.chr4 21412395 252 + 193495092 gacatttcaccatattcttaggttct-acccacactt-----------attttgcaagggtgaggggttattgggggccattcttagaattctTAGAATTCTCACAGACTTTCTATCAGGATTACAAGAT--TTATATTGA--ATGGGTAGTCTAAACTAAGGAAAAGCAAAAAGTTGAC-TCTTCACAGGGAGTT-TGAGCCCTAGTTCATATAAAGCAGAGAAAATAAA--TCAGAGATAGCAAG-AGACCAAGACAGATAGATGTAATTC- i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21588844 249 + 198332218 gacatttcaccatattcttaggttct-acccacactt-----------attttgcaagggtgaggggttactgggggccattcttagaattct---gcctaccacaGACTTTCTATTAGGATTACAAGAT--TTATATTGA--ATGGGTAGTCTAAACTAAGGAAAGGCAAAAAGTTGAC-TCTTTACAGGGGGTT-TGAGCCCTAGTTCATATAAAGCAGAGAAAACAAA--TCAGAGATAGCAAG-AGACCAAGACAGATAGATGTAATTT- i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20200812 249 - 85365473 gacatttcaccatattcttaggttct-acccacactt-----------attttgcaagggtgaggggttactgggggccattcttagaattct---gcctaccacaGACTTTCTATTAGGATTACAAGAT--TTATATTGA--ATGGGTAGTCTAAACTAAGGAAAAGCAAAAAGTCGAC-TCTTCACAGGGGGTT-TGAGCCCTAGTTCATACAAAGCAGAGAAAATAAA--TCAGAGATAGCAAG-AGACCAAAACAGATAGATGTAATTT- i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16666011 249 + 184069350 gacatttcaccatattcttaggttct-acccacactt-----------attttgcaagggtgaggggttattgggggccactctcagaattct---gcctatcacaGACTTTCTATTAGGATTGCAAGAT--TTATATTGA--ATGGGTAGTCTAAACTAAGGAAAAGCAAAAAGTTGAC-TCTCCACAGGTGGTT-TGAGCCCTAGTTCATATGAAGCAGAGAAAATAAA--TCAGAGATAGCAGG-AGACCAAGACAGATAGATGTAATCC- i rheMac3.chr5 C 0 I 9 s macFas5.chr5 20708473 249 + 189454096 gacatttcaccatattcttaggttct-acccacactt-----------attttgcaagggtgaggggttattgggggccactctcagaattct---gcctatcacaGACTTTCTATTAGGATTGCAAGAT--TTATATTGA--ATGGGTAGTCTAAACTAAGGAAAAGCAAAAAGTTGAC-TCTCCACAGGGGGTT-TGAGCCCTAGTTCATATGAAGCAGAGAAAATAAA--TCAGAGATAGCAAG-AGACCAAGACAGATAGATGTAATCC- i macFas5.chr5 C 0 I 9 s papAnu2.chr5 16302563 249 + 178775436 GACATTTCACCATATTCTTAGGTTCT-ACCCATACTT-----------ATTTTGCAAGGGTGAGGGGTTATTGGGGGCCactcttagaattct---gcctaccacagacTTTCTATTAGGATTGCAAGAT--TTATATTGA--ATGAGTAGTCTAAACTAAGGAAAAACAACAAGTTGAC-TCTCCACAGGGGGTT-TGAGCCCTAGTTCATatgaagcagagaaaataaa--tcagagataGCAAG-AGACCAAGACAGATAGATGTAATCC- i papAnu2.chr5 C 0 I 9 s chlSab2.chr27 19790030 249 - 48547382 gacatttcaccatattcttaggttct-acccacactt-----------attttgcaagggtgaggggttattgggggccactcttagaattct---gcctaccacaGACTTTCTATTAGGATTGCAAGAT--TTATATTGA--ACGGGTAGTCTAAACTAAGGAAAAGCAAAAAGTTGAC-TCTTCACAGGTGGTT-TGAGCCCTAGTTCATATAAAGCAGAGAAAATAAA--TCAGAGATAGCAAG-AGACAAAGACAGATAGATGTAATTC- i chlSab2.chr27 C 0 I 9 s calJac3.chr3 21143730 248 - 190850796 gatatttcaccatattcttaggtttt-acccacactt-----------attttgcaagggtaaggggttatt-ggggccattcttagaattct---gcctaccacaGACTTTCTATTGGGATTATAAGAT--TTCCATTCA--CTGGGTAGTCTAAACTAAGGAAAAGTAAAAAGTTGAG-TCTTCACAGGGGGGT-TAAACCCTGGTTCATATAAAGCAGAGGAAATAAG--TCAGAGCTAGCGAG-ACACCAAGACAGATAGATGTAATTC- i calJac3.chr3 C 0 I 308 s mm10.chr5 49128719 237 + 151834684 GATACACCACAAT-TTGGAGAGTTGT-GCTTACACTT-----------ATCATGAAAGCATGATAGGAT-TTGGGGGTTTATTGCATAAATCT---TCCCAGGACAAACATTTCACTAGAGCTATATGGTTATTATGTTAA--GTGGAGAGGCTATATAAAGGGAAATACAAA----------TTCACAGGTGGTTGTGAACTCTAGCTCACTTGAAACCAAAGAAATAAA--CTAG-GAAAGCAAGCAAGCAAAGCCAGATGGA-GCAG---- i mm10.chr5 C 0 C 0 s canFam3.chr3 3727152 263 - 91889043 gatatctcatcatatttaaagattctaactctcactcaaagggggcggattatacaaggataatgggccactgggagccagtcttaagattgt---gtctgcca-AGACATCCTATTGGGGCTACATGAA--TT-CATTGAGCATGTCTGGCCTCTGTCAAGGGGAAGC--AAAGTTGACTTTTTCACTGGGAGCT-TGAACCCTGGCATATAAAAAGCTAAAGAAATAAAAGTTTGAGAGATCAAG-AGACAAAGAGAAAACTCGGTAGTGTG i canFam3.chr3 I 213 C 0 a score=2062234.000000 s hg38.chr4_KI270790v1_alt 25092 543 + 220246 GAAGAGA----GAGAAACAGAA---ACTAAC--TTGCCATGAACCGAAAGA--TTGTATATTCTTTTTCCTCTCTGATTCACTAATGTATGCTTTCTAGGAGAAGACATAACA----TATTCTAAAATGTTTGTTTTTCTTAAAAGGTATTTGCATTTCCTAATTGGCATATTATTTCATAATTATACTC--ATACTAAATCTGAATGTTTGAGCCATTCTTA---TGTCTTCCTTCCATGATAAGTTGTTTATGTTGTGGAATGTCTGAGTCTATAATTAAATTATTGTCTCTAACAAGTTAACCATATCCATGCATACATTAACATATCATTAT-AATGT--GGGAAAACATAGATGTGTACCATAGAACATCAAGCTGAATGGGGCTCTGCAGATCTGGGTTGACGTTTCTGGTAACTGGTCTCCATTCTGGAGGTTTCAAGG---GGCAGAACTAAAAACTCCAGAAGAAAGAGAAAATTTATTCTTATCTGAAATAAAGAGAAGGTATGATAATAGGAAATGTTATTTTACAAATATCTACTCCAATTTCTCTTCCTTTCTACC s panTro4.chr4 21412647 543 + 193495092 GAAGAGA----GAGAAACAGAA---ACTAAC--TTGCCATGAACCCAAAGA--TTGTATATTCTTTTTCCTCTCTGATTCACTAATGTATGCTTTCTAGGAGAAGACATAACA----TATTCTAAAATGTTTGTTTTTCTTAAAAGGTATTTGCATTTCCTAATTGGCATATTATTTCATAATTATACTC--ATACTAAATCTGAATGTTTGAGCCATTCTTA---TGTCTTCCTTCCATGATAAGTTGTTTATGTTGTGGAATGTCTGAGTCTATAATTAAATTATTGTCTCTAACAAGTTAACCATATCCATGCATACATTAACATATCATTAT-AATGT--GGGAAAACATAGATGTGTACCATAGAACATCAAGCTGAATGGGGCTCTGCAGATCTGGGTTGGCGTTTCTGGTAACTGGTCTCCATTCTGGAGGTTGCAAGG---GGCAGAACTAAAAACTCCAGAAGAAAGAGAAAATTTATTCTTATCTGAAATAAAGAGAAGGTATGATAATAGGAAATGTTATTTTACAAATATCTACTCCAATTTCTCTTCCTTTCTACC i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21589093 542 + 198332218 GAAGAGA----GAGAAACAGAA---ACTAAC--TTGCCATGAACCCAAAGA--TTGTATATTCTTTTTCCTCTCTGATTCACTAATGTTTGCTTTCTAGGAGAAGACATAACA----TATTCTAAAATGTTTGTTTTTCTTAAAAGGTATTTGCA-TTCCTAATTGGCATATTATTTCATAATTATACTT--ATACCAAATCTGAATGTTTGAGCCATTCTTA---TGTCTTCCTTCCATGATAAGTTGTTTATGTTGTGGAATGTCTGAGTCTATAATTAAATTATTGTCTCTAACAAGTTAACCATATCCATGCATATATTAACATATCATTAT-AATGT--GGGAAAACATAGATGTGTACCATAGAACATCAAGCTGAATGGGGCTCTGCAGATCTGGGTTGGCATTTCTGGTAACTGGTCTCCATTCTGGAGGTTGCAAGG---GGCAGAACTAAAAACTCCAGAAGAAAGAGAAAATTTATTCTTATCTGAAATAAAGAGAAGGTATGATAATAGGAAATGTTATTTTACAAATATCTACTCCAATTTCTCTTCCTTTCTACC i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20201061 533 - 85365473 GA----A----GAGAAACAGAA---ACTAAC--TTGCCACGAACCCAAAGA--TTGTATATCCTTTTTCCTCTCTGAGTCACTAATGTATGCCTTCTAGGAGAAGACATAACA----TATTCTAAAATGTTTGTTTTTCTTAAAAGGTATTTGCATTTCCTAATTGGCATATTATTTCATAATTATATT--------AAATCTGAATGTTTGAGCCATTCTTA---TGTCTTCCTTCCATGATAAGTTGTTTATGTTGTGGAATGTCTGAGTCTATAATTAAATTATTGTCTCTAACAAGTTAACCATATCCATGCATACATTAACATATCATTAT-AATGT--GGGAAAACATAGATGTGTACCATAGAACATCAAGCTGAATGGGGCTCTGCAGATCTGGGTTGGCATTTCTGGTAACTGGTCTCCATTCTGGAGGTGGCAAGG---GGCAGAACTAAAAACTCCAGAAGAAAGAGAAAATTTATTCTTATCTGAAATAAAGAGAAGGTATGATAATAGGAAATGTTATTTTGCAAATATCTACTCTAATTTCTCTTCCTTTCTACC i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16666269 543 + 184069350 GAAGAGA----GAGAAACAGAA---ACTAAC--TTGTCACGAATCCAAAGA--GTGTATATTCTTTTTCCTCTCTGATTCATTAATGTATGCTTTCTAGGAGAAGACGTAACA----TATTCTAAAATGTTTGTTTTTCTTAAAAGGCATTTGTGTTTTCTAATTGGCATATTATTTCATAATTATACTC--ATATTAAATCTGAATGTTTGAGCCATTCTTA---CGTCTTCCTTCCATGATAAGTTGTTTATGTTGTGGAATGTCTGAGTCTATAATTACATTATTGTCTCTAACAAGTTAACCATATCCATGCATACATTAACATATCATTAT-AATGT--GGGAAAACATAGATGTATGCCATAGAACATCAAGCTGAATGGGGCTCTGCAGATTTGGGTTGGCGTTTCTGGTAACTGGTCTCCATTCTGGAGGTGGCAAGG---GGCAGAACTAAAAACTCCAGAAGAAAGAAAAAATGTATTCTTATCTGAAATAAAGAGAAGGTATGATAATAGGAAATGTTATTTAGCAAATATCTACTCCAATTTCTCTTCCTTTCTACC i rheMac3.chr5 I 9 C 0 s macFas5.chr5 20708731 543 + 189454096 GAAGAGA----GAGAAACAGAA---ACTAAC--TTGTCACGAATCCAAAGA--GTGTATATTCTTTTTCCTCTCTGATTCATTAATGTATGCTTTCTAGGAGAAGACGTAACA----TATTCTAAAATGTTTGTTTTTCTTAAAAGGCATTTGTGTTTTCTAATTGGCATATTATTTCATAATTATACTC--ATATTAAATCTGAATGTTTGAGCCATTCTTA---CGTCTTCCTTCCATGATAAGTTGTTTATGTTGTGGAATGTCTGAGTCTATAATTACATTATTGTCTCTAACAAGTTAACCATATCCATGCATACATTAACATATCATTAT-AATGT--GGGAAAACATAGATGTATGCCATAGAACATCAAGCTGAATGGGGCTCTGCAGATTTGGGTTGGCGTTTCTGGTAACTGGTCTCCATTCTGGAGGTGGCAAGG---GGCAGAACTAAAAACTCCAGAAGAAAGAAAAAATGTATTCTTATCTGAAATAAAGAGAAGGTATGATAATAGGAAATGTTATTTAGCAAATATCTACTCCAATTTCTCTTCCTTTCTACC i macFas5.chr5 I 9 C 0 s papAnu2.chr5 16302821 542 + 178775436 ga----a----gagaaacagaa---actaac--TTGTCACGAATCCAAAGA--GTGtatattctttttcctctctgattCATTAATGTGTGCTTTCTAGGAGAAGACGTAACA----TAttctaaaatgtttgtttttcttaaaaggcATTTGTGTTTTCTAATTGGCATATTATTTCATAATTGTACTC--ATATTAAATCTGAATGTTTGAGCCATTCTTACGTCGTCTTCCTTCCATGATAAGTTGTTTATGTTGTGGAATGTCTGAGTCTATAATTACATTATTGTCTCTAACAAGTTAACCATATCCATGAATACATTAACATAACATTAT-AATGT--GGGAAAACATAGATATATGCCATAGAACATCAAGCTGAATGGGGCTCTGCAGATTTGGGTTGGCGTTTCTGGTAACTGGTCTCCATTCTGGAGGTGGCAAGG---GGCAGAACTAAAAActccagaagaaagagaaaatgtattcttATCTGAAATAAAGAGAAGGTATGATAATAGGAAATGTTATTTAGCAAATATCTACTccaatttctcttcctttctacc i papAnu2.chr5 I 9 C 0 s chlSab2.chr27 19790288 543 - 48547382 GAAGAGA----GAGAAACAGAA---ACTAAC--TTGTCACGAATCCAAAGA--GTGTATATTCTTTTTCCTCTCTGATTCATTAATGTATGCTTTCTAGGAGAAGACGTAACA----TATTCTAAAATGTTTGTTTTTCTTAAAAGGCATTTGTGTTTTCTAATTGGCATATTATTTCATAATTATACTC--ATATTAAATCTGAATGTTTGAGCCATTCTTA---CATCTTCCTTCCATGATAAGTTGTTTATGTTGTGGAATATCTGAGTCTATAATTACATTATTGTCTCTAACAAGTTAACCATATCCATGCATACATTAACATATCATTAT-AATGT--GGGAAAACATAGATGTATGCCATAGAACATCAAGCTGAATGGGGCTCTGCAGATTTGGGTTGGCGTTTCTGGTAACTGGTCTCCATTCTGGAGGTGGCAAGG---GGCAGAACTAAAAACTCCAGAAGAAACAGAAAATGTATTCTTATCTGAAATAAAGAGAAGGTATGATAATAGGAAATGTTATTTAGCAAATATCTACTCCAATTTCTCTTCCTTTCTACC i chlSab2.chr27 I 9 C 0 s calJac3.chr3 21144286 544 - 190850796 GAATAGAAATGGAGAAACAGAA---ACTAAC--TTGCCATGATCCCAAAGA--TCGTGTGT--TTTTTCCTCTCTGATTCACTAATGTATGCTTTCTAGGAAAAGACATAACA----TATTCTAAAATGTTTGTTTTTCTTAAAAGTTATTTGCATTTCCTAATTGGTATATTATTTTATAATTATACTC--ATATTAAATCTGAAGGTTTGAGCCATTCTTA---TGTCTTCCTTCGGTAATAAGTTGTTTATGCTGTGGAATGTCTGAGTCTATAATTAAATTATTGTCTTTAACAAGTTAACCATA-CCATGCATACATTAACATATCATTAT-AGTGT--GGGAAAACATAGATGTGTGCCATAGAATGTCAAGCTGAATGAGGCTCTGCAGATCTGAGTTGGCATTTCTGGTAACTGATCTTCATTCCAGAGGTAGCAAGG---GGCAGAACTAAAAACTTCAGGAGAAAGAGAAAACTTATTCTTATCTGAAATAAAGAGAAGGTACGATAATAGGAAATGTTACTTAGCAGATATCTACTCCAATTCCTCTTCCTTTCTAGC i calJac3.chr3 I 308 C 0 s mm10.chr5 49128956 521 + 151834684 GAAGA-A----GAGAAACAAAACAGATTAGCCATCACCGTGGAGACAAGGA------ATATTCTTTTCATGTTCTGATTTTCAAGTGTCTCCTTTATGGCAGAGAATATAAAACAAGTATTTT---ATATTTGTTTTTCTT--AAGTTAATTGCTTGTCTTTATT----TATTATTTCATAATTATAGTCTGGTTTCAAATCTGAACATTTGAGTCATTCTTA-----TCTTCCTACCTTGTTAACTTGTTTATGCTGTGAAACTTCCGAGTCTATAATTAAATAATTGTCTCAAACAAATTTACCATAGCCATGCATACATTAGCATTTCGTTAT-AACAGTAGAAAAAACATAAATGTATACTATAGGATGTCAAGGTGAATGAGA-TCAATGAATCTAGGTTCCTGCATCTAGTATCTGGCATGGATCTTATAAATAAAAAGAAATGATAGAA-TGATAATTCCAGA--------------TACTCTCACCTAAAATTATGGCAACGTATGATGGCTGGAAA--CTATTTAGCAAATACTTATGACA----CTCCTCCATTTTATC i mm10.chr5 C 0 I 2440 s canFam3.chr3 3727415 534 - 91889043 ----------GGAGAGAGAGAA---ACAGAC--TTGTCGTGACCTGCAGTACTGTGTATATTATTTTTCCTCTCTGGTTTGTTAACTATTATTCTCTAG---AAGACATGAAA----CATTCTAAAATGCCTGTTTTTCTGAAAAGTCATTTGCATCTCCTAATTGGTATGTCATTTCATAATTACACTCTGGTACCAAATCTGAAGTTTTCAGCCATTCTTA---TGACTTCCTTCCCCGTTAAGTTGTTTATGCTGTGGAATGTCTGAGTCTATAATTAAATTATTGTCTCCAACAAATTAACCACATCCGTGCATACATTAGCATATCATTATAAATGT--GGAAAAACATAGATGTGTGCTATAGAATGTCAAGCTGAGTGATGCAGCACAGATCTGGGCTTGCTTTTCTGAGAAGTAGCCTCAATGTTGATGCTGGGAAGA---GGTAGAGGAAATAACCCCAG--GAAGGAGAAAATGCACCATTACCTGAAATAAGAAAAGGA---GATGATTGGAAACAGTTTTGAACAAATATTTACTCAAAACCCCCTTGTTCCTCATT i canFam3.chr3 C 0 C 0 a score=165516.000000 s hg38.chr4_KI270790v1_alt 25635 57 + 220246 ACGGAAAAAAATATTTCCTCATCACATTCATATTG--------------------------------------------------CTG-------------------------GGTTTGGCTTGGCTCTTGT s panTro4.chr4 21413190 57 + 193495092 ACGGAAAAAAATATTTCCTCATCACATTCATATTG--------------------------------------------------CTG-------------------------GGTTTGGCTTGGCTCTTGT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21589635 57 + 198332218 ACAGAAAAATATATTTCCTCATCACATTCATATTG--------------------------------------------------TTG-------------------------GGTTTGGCTTGGCTCTTGT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20201594 57 - 85365473 ACGGGAAAATACATTTCCTTATCACATTCATATTG--------------------------------------------------CTG-------------------------GGTTTGGCTTGGCTCTTGT i nomLeu3.chr20 C 0 M 128 s rheMac3.chr5 16666812 57 + 184069350 ACGGAAAAATATATTTCCTCATCCCATTGATATTG--------------------------------------------------CTG-------------------------GGTTTGGCTTGTCTCTTGT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20709274 57 + 189454096 ACGGAAAAATATATTTCCTCATCCCATTGATATTG--------------------------------------------------CTG-------------------------GGTTTGGCTTGTCTCTTGT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16303363 57 + 178775436 acggaaaaatatatttcctcatCCCATTGATATTG--------------------------------------------------CTG-------------------------GGTTTGGCTTGTCTCTTGT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19790831 57 - 48547382 ACGGAAAAATATATTTCCTCATCCCATTGATATTG--------------------------------------------------CTG-------------------------GGTTTGGCTTGTCTCTTGT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21144830 57 - 190850796 ACGGAAAAATATATTTCCTCATCCCACTGATACTG--------------------------------------------------CTG-------------------------AGTTTGGATTGGCTCTTGT i calJac3.chr3 C 0 C 0 s canFam3.chr3 3727949 131 - 91889043 ATGGGAAAATAT-TATCCTCAGTCcatggacattggatttggtcatgtgtcttgctttggccaacagaacgttagtgaatatgatctgaaaagagccttaaATGTATTTGTGAAGTTTGAGTTGGCTCTCGT i canFam3.chr3 C 0 C 0 e mm10.chr5 49129477 2440 + 151834684 I a score=332210.000000 s hg38.chr4_KI270790v1_alt 25692 131 + 220246 GCTGTGG-TGATCCACTGTGATCAAACCATGCCCCTG-AGACTGGGCACTAGGACAAATGAATGTGGAGTAGAAATGCCAAAATCTGCTGTTCAACTgagtctcccagcagaacccagtctagatcagctgaa s panTro4.chr4 21413247 131 + 193495092 GCTGTGG-TGATCCACTGTGATTAAACCATGCCCCTG-AGACTGGGCACTAGGACAAATGAATGTGGAGTAGAAATGCCAAAATCTGCTGTTCAACTgagtctcccagcagaacccagtctagatcagctgaa i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21589692 131 + 198332218 GCTGTGG-TGATTCACTGTGATCAAACCATGCCCCTG-AGACTGGGCACTAGGACAAATAAATGTGGAGTAGAAATGCCAAAATCTGCTGTTCAACTgagtctcccagcagaacccagtctagatcagctgaa i ponAbe2.chr4 C 0 C 0 s rheMac3.chr5 16666869 130 + 184069350 GCTGTGG-TGATCCACTGTGATCAAACCATGCCCCTG-AGACTGGGCACTAGGACAAATAAATGTGGAACAGAAATGCCAAAATCTGCTGTTCAACTGAGTCTCccagcagaa-ccagtctagatcagcagaa i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20709331 130 + 189454096 GCTGTGG-TGATCCACTGTGATCAAACCATGCCCCTG-AGACTGGGCACTAGGACAAATAAATGTGGAACAGAAATGCCAAAATCTGCTGTTCAACTGAGTCTCCCAGCAGAA-CCAGTCTAGATCAGCAGAA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16303420 130 + 178775436 GCTGTGG-TGATCCACTGTGATCAACCCATGCCCCTG-AGACTGGGCACTAGGACAAATAAATGTGGAGCAGAAATGCTAAAATCTGCTGTTCAACTGAGTCTCCCAGCAGAA-CCAGTCTAGATCAGCAGAA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19790888 130 - 48547382 GCTGTGG-TGATCCTCTGTGATCAAACCATGCCCCTG-AGACCGGGCACTAGGACAAATAAATGTGGAGCAGAAATGCCAAAATCTGCTGTTCAACTGAGTCTCccagcagaa-ccagtctagatcagcagaa i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21144887 130 - 190850796 GCTGTGG-TGATCCACTATAATCAAACCATGTCCCTA-AGACTGGGCACTAGGACAAATACATGTGGAGTCG-ACTGCCAAAACCTGCTGTTCAACTGAGTCTTCCAGAAGAACCCAGTCTAGACCAGTTGAA i calJac3.chr3 C 0 C 0 s canFam3.chr3 3728080 118 - 91889043 GCTCTAGCTTATCCACGGTGATAAAACCAAGCTCCTTCAAACTGCACGCTCGGACACATGTGTATGGAGAACGGACA---------------CACCTGAGCCTCCCGTCTCAACCTGGTCTAGGTGAGCTGAA i canFam3.chr3 C 0 C 0 e mm10.chr5 49129477 2440 + 151834684 I e nomLeu3.chr20 20201651 128 - 85365473 M a score=456442.000000 s hg38.chr4_KI270790v1_alt 25823 134 + 220246 -ccaagtcacatacagacctgtgaatctgaagataaatacttggaattgcaagcccactgtgttttgggacagtttgttacacagcattgatgcagccatagctgactaatacaACAA----AGAAAAGAAGGAAAAA-A s panTro4.chr4 21413378 134 + 193495092 -ccaagtcacatacagacctgtgaatctgaagataaatacttgcaattgcaagcccactgtattttgggacagtttgttacacagcattgatgcagccatagctgactaatacaACAA----AGAAATGAAGGAAAAA-A i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21589823 134 + 198332218 -ccaagtcacatacagacctgtgaatctgaagataaatacttgcaattgcaagcccactgtgttttgggacagtttgttacacagcattgatgcagccatagctgactaatacaACAA----AGAAAAGAAGGAAAAA-A i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20201779 135 - 85365473 -CCAAGTCACGTACAGACCTGTGAATCTGAAGATAAGTACTCGCAATTGCAAGCccactgtgttttgggacagtttgttacacagcattgatgcagccatagctgactaatacaACAA----AGAAAAGAAGGAAAAACA i nomLeu3.chr20 M 128 C 0 s rheMac3.chr5 16666999 138 + 184069350 -ccaagtcacatacagacctgtgaatctgaagataaatacttgcaattgcaaacccactatgttatgagatagtttgttacacagcattgatgcagccatagctgactaatacaACAACAACAAAAAAGAATGAAAAA-A i rheMac3.chr5 C 0 I 1 s macFas5.chr5 20709461 138 + 189454096 -CCAAGTCACATACAGACCTGTGAATCTGAAGATAAATACTTGCAATTGCAAACCCACTGTGTTATGAGATAGTTTGTTACACAGCATTGATGCAGCCATAGCTGACTAATACAACAACAACAAAAAAGAATGAAAAA-A i macFas5.chr5 C 0 I 1 s papAnu2.chr5 16303550 137 + 178775436 -CCAAGTCACATACAGACCTGTGAATCTGAAGATAAATACTTGCAATTGCAAACCCACTGTGTTATGAgatagtttgttacacagcattgaTGCATCCATAGCTGACtaatataacaacaa-aaaaaagaatgaaaaa-a i papAnu2.chr5 C 0 I 1 s chlSab2.chr27 19791018 130 - 48547382 -ccaagtcacatacagacctgtgaatctgaagataaatacttgcaattgcaagcccactgtgttttgagatagtttgttacacagcattgatgcagtcatagctgactaataca--------AAAAAAGAAAGAAAAA-A i chlSab2.chr27 C 0 I 1 s calJac3.chr3 21145017 134 - 190850796 -CCAAGTCACATACAGACCTGTGAGTCTGAAGACAAATACGTGCGATTGCAAACCCACTGTGTTTTGGGATAGTGTGTTATACAGCCTTGATGCAGCCATAGCTGACTAATAGAACAA----AGAAAAGAAGGAAAAA-A i calJac3.chr3 C 0 I 1 s canFam3.chr3 3728198 133 - 91889043 CTCCAGTCACCTGCAGACCTCTGAATTGGAGGATAAATATTTACTGTTGCAAGCCCACCCAGTT-TGGGATAGTTTGTTACACAACATCATTGCAACC-TAGTTGACTAATACAAAAG----AGAAAGGAAGGGAAAA-A i canFam3.chr3 C 0 I 102 e mm10.chr5 49129477 2440 + 151834684 I a score=453415.000000 s hg38.chr4_KI270790v1_alt 25957 157 + 220246 TCTTCAGATACAG----------------------------------------------------------AATTATGTT----------------------------------------------TAAATTTAATTAAACtaaatatatacatatttatgtctgtacatttatagattatatct--atatatatGACACATG--------------------------------------CACTTTTTAAAAATAGCTCC--TTTG-GCAGAGTTTTGTGTTAATATTTTCATTAAAAGAGGC s panTro4.chr4 21413512 157 + 193495092 TCTTGAGATACAG----------------------------------------------------------AATTATGTT----------------------------------------------TAAATTTAATTAAACtaaatatatacatatttatgtctgtacatttatagattatatct--gtatatatGACACATG--------------------------------------CACTTTTTAAAAATAGCTCC--TTTG-GCAGAGTTTTGTGTTAATATTTTCATTAAAAGAGGC i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21589957 157 + 198332218 TCTTGAGATACAG----------------------------------------------------------AATTATGTT----------------------------------------------TAAATTTAATTAAACtaaatatatacatatttatgtctgtacatttatagattatatct--atatatatGACACACG--------------------------------------CACTTTTTAAAAATAGCTCC--TTTG-GCAGAGTTTTGTGTTAATATTTTCATTAAAAGAGGC i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20201914 157 - 85365473 TCTTGAGATACAG----------------------------------------------------------AAttatgtt----------------------------------------------taaatttaattaaactaaatatatacatatttatgtctgtacatttatagattatatct--atatttatGACACATG--------------------------------------CCCATTTTAAAAATAGCTCA--TTTG-GCAGAGTTTTGTGCTAATATTTTCATTAAAAGAGGC i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16667138 157 + 184069350 TCTTGAGATACAA----------------------------------------------------------AATTATGTT----------------------------------------------TAAACTTAAATAAGCTAAATATGTACATATTTATGTCTGTACATTTAAAGATTATACCT--ATACATGTGACACATG--------------------------------------CACATTTTAAAAATAACTCC--TTTG-GCAGAGTTTTTTGTTAATATTTTCATTAAAAGAGGC i rheMac3.chr5 I 1 C 0 s macFas5.chr5 20709600 157 + 189454096 TCTTGAGATACAA----------------------------------------------------------AATTATGTT----------------------------------------------TAAACTTAAATAAGCtaaatatatacatatttatgtctgtacatttaaagattatacct--atatatGTGACACATG--------------------------------------CACATTTTAAAAATAACTCC--TTTG-GCAGAGTTTTTTGTTAATATTTTCATTAAAAGAGGC i macFas5.chr5 I 1 C 0 s papAnu2.chr5 16303688 157 + 178775436 tctTGAGATACAA----------------------------------------------------------AATTATGTT----------------------------------------------TAAACTTAAATAagctaaatatatacatatttatgtctGTACATTTAAAGATTATACCT--ATATATGTGAcacatg--------------------------------------cacattttaaaaataactcc--ttTG-GCAGagttttttgttaatattttcattaaaagagGC i papAnu2.chr5 I 1 C 0 s chlSab2.chr27 19791149 157 - 48547382 TCTTGAGATACAA----------------------------------------------------------AATTATGTT----------------------------------------------TAAACTTAAATAAGCtaaatatatacatatttatgtctgtacatttatagattatacct--ttatatatGACACATG--------------------------------------CACATTTTAAAAATAGCTCC--TTTG-GCAGAGTTTTTTGTTAATATTTTCATAAAAAGAGGC i chlSab2.chr27 I 1 C 0 s calJac3.chr3 21145152 156 - 190850796 TCTTGAGATACAG----------------------------------------------------------AATTATGTT----------------------------------------------TAAATTTAATTAACCTAAatatatacatatttatatctgtatatttatagattatatct--atatatatGACTCATG--------------------------------------CACTTGGTAAAAATAGCTC---TTTG-ACAGAATTTCATGTTAATATTTGCATTAAAGGAGGC i calJac3.chr3 I 1 C 0 s canFam3.chr3 3728433 303 - 91889043 tcttcagatccagccccacattgggctccctgctcagcggggagtctgcttctccctctgctgctctccctgcttatgcttgctctctctcccaagtaaataacaaataaaatatttaaaaaaTGATAAATCAAGTTAAGCTTAATATATGGATACTTCTAGC-ACATACTTACACATTATGCCTACATATACATAGCATATGTGTGTGTGTGTGTGTGTAGTGTTTCCTTAACAGTATATCACACTTATAAAAGTGCTCCGTTTTGTAGAGAGGTTCCTCCTAAAATTTATATGTAGAGAGGT i canFam3.chr3 I 102 C 0 e mm10.chr5 49129477 2440 + 151834684 I a score=629175.000000 s hg38.chr4_KI270790v1_alt 26114 183 + 220246 TCTTATATGATAATATTGCTCACAATGAAATGTAACAACTGTGTAGCTGGAAGCATTATCTCTCC------------------------------------------------TCTTTGGGCAACAGTC---CCTGTAGTCTCTTGGTTATTCAGAATTTTAAAGGGACCATATTA-CCCTATAAACTTAAGCATATGCACAAAACTGCTTTTGGGGAAGGCTACGA-TTTCTAAA s panTro4.chr4 21413669 183 + 193495092 TCTTATATGATAATATTGCTCACAATGAAATGTAACAACTGTGTAGCTGGAAGCATTATTTCTCC------------------------------------------------TCTTTGGGCAACAGTC---CCTGTAGTCTCTTGGTTATTCAGAATTTTAAAGGGACCATATTA-CCCTATAAACTTAAGCATATGCACAAAACTGCTTTTGGGGAAGGCTATGA-TTTCTAAA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21590114 183 + 198332218 TCTTATATGATAATATTGCTCACAATGAAATGTAACAACTGTGTAGCTGGAAGCATTATTTCTCC------------------------------------------------TCTTTGGGCAACAGTC---CCTGTAGTCTCTTGGTTATTCAGAATTTTAAAGTGACCATATTA-CCCTATAAACTTAAGCATATGCACAAAACTGCTTTTGGGGAAGGCTATGA-TTTCTAAA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20202071 183 - 85365473 TCTTATGTGATAATATTGCTCATTATGAAATGTAACAAATGTGTAGCTGGAAGCATTATTTCTCC------------------------------------------------TCTTTGGGCAATAGTC---CCTGTAGTCTTTTGCTTATTCAGAATTTTAAAAGGACCATATTA-CCCTATAAACTTCAGCACATGCACAAAACTGCTTTTGGGGAAGCCTATGA-TTTCTAAA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16667295 180 + 184069350 TCTTATGTGATAATATTGCTCACAATGAAATGTAACGAC--TGTAGCTGGAAGCATTATTTCTCC------------------------------------------------TCTTTGGGTAACAGTC---CCTGTAGTCTCTTGGTTATTCAGAATTTTAAAGGGATCATATTA-CCCTA-AAACTTAAGCATATGCACAAAACTGCTTTTGGGGATGGTTATGA-TTTCTAAA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20709757 180 + 189454096 TCTTATGTGATAATATTGCTCACAATGAAATGTAACGAC--TGTAGCTGGAAGCATTATTTCTCC------------------------------------------------TCTTTGGGTAACAGTC---CCTGTAGTCTCTTGGTTATTCAGAATTTTAAAGGGATCATATTA-CCCTA-AAACTTAAGCATATGCACAAAACTGCTTTTGGGGATGGTTATGA-TTTCTAAA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16303845 180 + 178775436 TCTTATGTGATAATATTGCTCACAATGAAATGTAACAAC--TGTAGCTGGAAGCATTATTTCTCC------------------------------------------------TCTTTGGGCAACAGTC---CCTGTAGTCTTTTGgttattcagaattttaaaggGATCGTATTA-CCCTA-AAACTGAAGCATATGCACAGAACTGCTTTTGGGGATGGTTATGA-TTTCTAAA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19791306 181 - 48547382 TCTTATGTGATAATATTGCTCACAATGAAATGTAACAAC--TGTAGCTGGAAGCATTATTTCTCC------------------------------------------------TCTTTGGGCAACAGTC---CCTGTAGTCTCTTGGTTATTCAGAATTTTAAAGGGATCGTATTA-CCCTATAAACTTAAGCATATGCACAAAACTGCTTTTGGGGAAGGTTATAA-TTTCTAAA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21145308 183 - 190850796 TCTCGGATGATAATATTGCCCAGAGTGCAATCTAACAACAGTGTAGCTGGAAGTGTTATCTCTCC------------------------------------------------TCTTCGGGCTACAGTT---CCTGTAGTCTACCGGTTTTTCAGAATTTTAAAGGGATCATATAA-CTCTGTAAACTTAAGCATATGCCCAAAACTGCTTTTGGAGAAGGCTATGA-TTTCTAAA i calJac3.chr3 C 0 C 0 s mm10.chr5 49131917 235 + 151834684 TCTAATTTGGTGAATTTGTTTGCAACAAAATACCATAGCAATACAGCTGGAAGCATTATTTATTCAACTGAGCTACTACTAGGTACTATATGTCCTCAGTTatcgcttctcggccttttggctaagatcaagtgtatatgtcctcagttATTTAGACTATTAAAGGTCTCATATGATTTTTATGAACTGCAGCATATGCAAGGAAATACATCATGGGAAGGTTGTAA-ACTTGAAA i mm10.chr5 I 2440 I 1793 s canFam3.chr3 3728736 173 - 91889043 CCTTATATGACACTATTGCTCACAATGAAATGTAAC-ACAGTGCAGCTGGAAATGTTAGTTCTCC------------------------------------------------CTATTGG------------GCTATATACTCCTGGTTATTCACAATTTTAAAGGGATCTTATAA-CTCTATAAACAGAGGCATATACAGAAAACTGCTTTTTGA-AAGGCTATAACCTTCTACA i canFam3.chr3 C 0 C 0 a score=45442.000000 s hg38.chr4_KI270790v1_alt 26297 12 + 220246 CAATCTCAGATA s panTro4.chr4 21413852 12 + 193495092 CAATCTCAGATA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21590297 12 + 198332218 CAATCTCAGATA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20202254 12 - 85365473 CAATCTCAGGTA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16667475 12 + 184069350 CAATCTCAGATA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20709937 12 + 189454096 CAATCTCAGATA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16304025 12 + 178775436 CAATCTCAGATA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19791487 12 - 48547382 CAATCTCAGATA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21145491 12 - 190850796 CAATCCCAGATA i calJac3.chr3 C 0 C 0 s canFam3.chr3 3728909 12 - 91889043 TGATCTCAGGTA i canFam3.chr3 C 0 C 0 e mm10.chr5 49132152 1793 + 151834684 I a score=1665219.000000 s hg38.chr4_KI270790v1_alt 26309 597 + 220246 CATAaggccgaatgtctgttatctgaaacgcttgagactacaagtgttttagatttcaga-----ttttttttggattttggaatatttgcatacgtatttgcagatagaagctattttatagcttggggatgagttccaagcctaaatctaaaatttgtttatgtttcatatataccttatacgtatagcctgaaggtgactttataaaatattttaataattttgcgcctgaaacaaagtttgtgtacactgaaccatcagaaagcaaaggtgtcccaatctcaaccacccatgtggacaatctgtggttgtttggcatcattatcattcctgactctgaatttatatgctattaataagcatttattttcttacatttattcacacataagtacttaacagtaaaatatatggcatattgttaatgcagtgaaaacataatatgttcagggtaaccaaggagcacagcagtgtcaccagaatacc--tgttatctgtttaaaaacaccagcaatcaaaaatggcaagtcttcaCTTATtcaaaaatgtttatattctgc--------agcatttcggatcttaagttttcagattatggatattcaact s panTro4.chr4 21413864 597 + 193495092 CATAaggccgaatatctgttatctgaaacgcttgagactacaagtgttttagatttcaga-----ttttttttggattttggaatatttgcatacgtatttgcagatagaagctattttatagcttggggatgagttccaagcctaaatctaaaatttgtttatgtttcatatataccttatacgtatagcctgaaggtgactttataaaatattttaataattttgtgcctgaaacaaagtttgtgtacactgaaccctcggaaagcaaaggtgtcccaatctcaaccacccatgtggacaatctgtggttgtttggcatcattatcattcctgactctgaacttacatgctattaataagcatttattttcttacatttattcacacataagtacttaacagtaaaatatatggcatcttgttaatgcagtgaaaatataatgtgttcagggtaaccaagcagcacagcagtgtcaccacaatacc--tgttatctgtttaaaaacaccagcaataaacaatggcaggtcttcaCTTATtcaaaaatgtttatattttgc--------agcatttcggatcgtgagttttcagattatggatattcaact i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21590309 597 + 198332218 CACAaggccgaatatctgttatctgtaacgcttgagactacatatgttttagatttcaga-----ttttttttggattttggaatgtttgcatatgtatttgcagatagaagctattttatagcttggggatgagttccaagcctaaatctaaaatttgtttatgtttcatatataccttatatgtatagcctgaaggtgactttataaaatattttaataattttgtgcctgaaacatagtttgtgtacactgagccatcagaaagcaaaggtgtcccgatctcaaccacccatgtggacagtccgtggttgtctggcatcatcatcattcctgactctgaatttatatgctattaataagcattcattttcttacatttattcacacataagtacttaacagtaaaatatatggcatattgctaatgcagtgaaaatataatgtgtccggggtaaccaagcagtacggcagtgtcaccagaatacc--tgttatctgtttaaaaacaccagcaataaacaatgacagctcttcaCTTATtcaaaaatgtttatattttgc--------agcattttggatcttgagttttcagattatggatagtcaact i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20202266 596 - 85365473 CATAaggctgaatatctgttatctgaaacgcttgagactacaagtgttttagatttcagg------tttttttggattttggaatatttgcatgtgtatttgcagatagaagctattttatagcttggggatgagttccaagcctaaacctaaaattcgtttatgtttcatatataacttatacgtataacctgaaggtgattttataaaatattttaataattttgtgcctgaaacaaagtttgtgtacactgaaccatcagaaagcaaaggcatcccaatctcaaccacccatgtggacaatccgcggttgtttggcatcattatcattcctgactctgaatttatatcctattaataagcactcattttcttacatttattcacacataagtacttaacagtaaaatatatggcatattgttaatgcagtgaaaatataatgtgttcagggtaaccaagcagcacagcactgtcaccagaatatc--tgttatctgtttaaaaacaccggcagtaaacaatggcaggtcttcaCCTATtcaaaactgtttatattttgc--------agcattttggatcttgagttttcagattatggatattcaact i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16667487 577 + 184069350 CATAaagctgaatatctgttatctgaaatgcttgagaccacaagtgtttcatatttcaggtttttttttttttggattttggaatatttgcatatgcatttgcagatacaagctattttctagcttggggatgagttccaagcctaagcctaaaattcgtt--tgtttcatatacaccttatatgtatagcgtgaaggtgattttataaaatat-------------------aaacaaagtttgtatacactgaaccatcagaaagcaaaggtgtcccgatctcaa----ccatgtggacaatccgtggttgtttggcatcatcatcattcctgactctgaatttatatgctatgaataagcactcattttcttacatttattcacacataagtacttaacagcaaaatatatagcatattgttaatgcagtgaaaatataatgtgttcaaggtaaccaagcagcatagcagtgtcaccggaatact--tgttatctgtttaaaaacaccagcaataaacaatggcaggtcttcagtTATATTTATATGTTTATattttgc--------agcatttcagatctcgagttttcagattagggatattcaact i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20709949 573 + 189454096 CATAaagctgaatatctgttatctgaaatgcttgagaccacaagtgtttcatatttcagg----gttttttttggattttggaatatttgcatatgcatttgcagatacaagctattttctagcttggggatgagttccaagcctaagcctaaaattcgtt--tgtttcatatacaccttatatgtatagcgtgaaggtgattttataaaatat-------------------aaacaaagtttgtatacactgaaccatcagaaagcaaaggtgtcccgatctcaa----ccatgtggacaatccgtggttgtttggcatcatcatcattcctgactctgaatttatatgctatgaataagcactcattttcttacatttattcacacataagtacttaacagcaaaatatatagcatattgttaatgcagtgaaaatataatgtgttcaaggtaaccaagcagcatagcagtgtcaccggaatact--tgttatctgtttaaaaacaccagcaataaacaatggcaggtcttcagtTATATTTATATGTTTATattttgc--------agcatttcagatctcgagttttcagattagggatattcaact i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16304037 572 + 178775436 CATAAAGCTGAATATCtgttatctgaaatgcttgagaccaCAAGTGTttcatatttcag-----tttttttttggattttggaatatttgcatatgcatttGCAGATACAAGCTATTTTATAGCTTGGGGATGAGTTCCAAGCCTAAGCCTAAAATTCgtt--tgtttcatatacaccttatatgTATAGCGTGAAggtgattttataaaatat-------------------aaacaaagtttgTATAcactgaaccatcagaaagcaaaggtgtcccGATCTCAA----CCATGTGGACAATCCGTGGTTGTTTGGCATCATCatcattcctgactctgaatttatatgctaTGAATAAGCActcattttcttacatttattcacACATAAGTACTTAACAGCAAAATATATGGCATATTGTTAATGCAGTGAAAATATAATGTGTTCAAGGTGACCAGGCAGCATAGCAGTGTCACCGGAATACT--TGTTATCTGTTTAAAAACACCAGCAATAAACAATGGCAGGTCTTCActtattcaaaaatgtttatattttgc--------agCATTTCAGATCTCGagttttcagattagggatattCAACT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19791499 594 - 48547382 CATAaagctgaatatctgttatctgaaatgcttgagaccacaagtgttttatatttcaga------tttttttggattttggaatatttgcatatgcatttgcagatacaagctattttatagcttagggatgagttccaagcctaaacctaaaattcatt--tgtttcatatacaccttacatgtatagcgtgaaggtgattttatacaatattttaataattttatgcgtgaaacaaagtttgtgtacactgaaccatcagaaagcaaaggtgtcccgagctcaaccacccatgtggacaatccgtggttgtttggcatcatcatcattcctgactctgaatttatatgctatgaataagcactcattttcttacatttattcacacataagtacttaacagcaaaatatatggcatattgttaatgcagtgaaaatataatgtgttcaaggtaaccaagcagcacagcagtgtcaccagaatact--tgttatctgtttaaaaacaccagcaataaacaatggcaggtcttcaCTTATtcaaaaatgtttatattttgc--------agcatttcaaatcttgagttttcagattagggatattcaact i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21145503 603 - 190850796 TACATAgttgaatatccatgatctgaaatgcttgggatcacatgtgttttagatttcaga------tttgtttggattttgaaatatttgcatatgcatttgcagatacaagctattttatagcttggagatgagttccatgtctgaacctaaaatttgtt--tgtttcatatatacctagtacatatagtctgaaggtgactttataaaatattttgataattttgtgcgtgaaacaaagtttgtgtacactgaaccatcagaaagcaaaggtgtcccaatctcagccacccacgttgacaatc-gtggttgtttggtataatcattattactgactctaaatttatatgctattaataagcactcattttctcacacttattcacaaataagtatttaacagtaaaatcaatggcatactgttagtgcagtgaaaaaataatgtgttcagggtaaccaagcagcacagcaatgtcatcacaatacctgtgttatctgtttgaaaacaccagcaataaacaatggcaggtctccatttattcaaaaatgtttatattttgaataaatggagcatttcagatcgtgcattttcagattagggatattcaact i calJac3.chr3 C 0 C 0 e mm10.chr5 49132152 1793 + 151834684 I e canFam3.chr3 3728921 0 - 91889043 C a score=1628925.000000 s hg38.chr4_KI270790v1_alt 26906 528 + 220246 tgTAGTACATTTAATTTTGTGATTTCTTTT-------GTT----------AAATAAAAAG-AAAAATCCTTGCAGATTATATGAAGGTCAGAACTGTCTCTTTGCATCAATAAAACATCAAAAGAAA-------------------------------AAGAGGACCACTGGGATGGGAAGAACACTTCCAATGCACTACTGAAAACAATGTAAATGGTTGGGAAAGTTGGCCACAAAGTCTTCTATTTCAATAG---------------------TTGTAATAACACATCACTGTTGCATAT-AAAATGTATCTGCAAATATGTCTATAATGACTGCTGATCATAAGATTTCTTGTTCTA-TTCACTCTGAAGTCT---AAAAAAAAA-A--AGCAAACTATCTACATAATCCAATTGAATACTCATT-ACATAAAGTGCTAATAATGTATACCTTCTCATATA---------CAAAAAAAAAA-----TGGATGGTTTAAAATTGCTTAGATCACAAGAGCCAATTACTTGGGCAGAATGGGGAAGGTGATATGAATGCATAAATCTTACATATATGCCTTACCATGGAGGGATAGCTTATATGCATGTGGTTGAAATG s panTro4.chr4 21414461 529 + 193495092 tgTAGTACATTTAATTTTGTGATTTCTTTT-------GTT----------AAATAAAAAG-AAAAATCCTTGCAGATTATATGAAGGTCACAACTGTCTCTTTGCATCAATAAAACATCAAAAGAAA-------------------------------AAGAGGACCACTGGGATGGGAAGAACACTTCCAATGCACTACTGAAAACAATGTAAATGGTTGGGAAAGTTGGCCACAAAGTCTTCTATTTCAATAG---------------------TTGTAATAACACATCACTGTTGCATAT-AAAATGTATCTGCAAATACGTCTATAATGACTGCTGATCATAAGATTTCTTGTTCTA-TTCACTCTGAAGTCT---AAAAAAAAA-----GCAAACTATCTACATAATCCAATTGAATACTCATTTACGTAAAGTGCTAATAATGTATACCTTCTCATATA---------CAAAAAAAAAA---AATGGATGGTTTAAAATTGCTTAGATCACAAGAGCCAATTACTTGGGCAGAATGGGGAAGGTGATATGAATGCATAAACCTTACATATATGCCTTACCATGGAGGGATAGCTTATATGCATGTGGTTGAAATG i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21590906 531 + 198332218 tgTAGTACATTTAATTTTGTGATTTCTTTG-------GTT----------AAATAAAAAGAAAAAATCTTTGCAGATTTTATGAAGGTCACAACTGTCTCTTTGCATCAATAAAACCTCAAAAGAAA-------------------------------AAGAGGACCACTAGGATGGGAAGAACACTTCCAATGCACTACTGAAAACAATGTAAATGGTTGGGAAAGTTGGCCACAAAGTCTTCTATTTCAATA------------------------GTAATAACTCATCACTGTTGCACAT-AAAATGTATCTGCAAATACGTCTATAATGACTGCTAATCATAAGATTTCTTGTTCTA-TTCACTCTGAAGTCT---AAAAAAAAAGA--AGCAAACTATCTACATAATCCAATTGAATACTCATT-ATGTAAAGTGCTAATAATGTATACCCTCTCATATA---------CAAAAAAAAAAAA-AATGGATGGTTTAAAATTGCTTAGATCACAAGAGCCAATTACTTGGGCAGAATGGGGAAGGTGATATGAATGCATAAATCTTACATATATGCCTTACCATGGAGGGATAGCTTATATGCATGTGTTTGAAATG i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20202862 529 - 85365473 tgTAGTATATTTAATTTTGTGATTTCTTTT-------GTT----------AAATAAAAAG-AAAAATCCTTGCAGATTATATGAAGGTCACAACTGTCTCTTTGCCTCAATAAAACCTCAAAAAAAA-------------------------------AAGAGGACCACTGGGATGGGAAGAACACTTCCAATGCACTACTGAAAACAATGTAAATGGTTGGGAAAGTTGGCCACAGAGTCTTCTATCTCAAAAG---------------------TTGTAATAACGCATCACTGTTGCATAT-AAAATGTATCTGCAAATACATCTATAATGACTGCTGATCATAAGATTTTTTGTTCTA-TTCACTCTGAAGCCT---AAAAAAAAAGA--AGCAAACTATCTACATAATCCAACTGAATACTCATT-ATGTAAAGTGCTAATAATGTATACCCTCTCATATA---------CAAAAAAAAAA-----TGGATGGTTTAAAATTGCTTAGATCACAAGAGCCAACTACTTGGGCAGAATGGGAAAGGTGATGTGAATGCATAAATCTTACATATATGCCTTACCATGGAGGGATAGCTTATATGTATGTGGTTGAAATG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16668064 538 + 184069350 tgCAGTACATTTAATTTTGTGATTTTTTTT--TTGTTGTT----------AAATAAAAAG-AAAAATCCTTGCAGATTATATGAAGGTCACAACTGTCTCTTTGCATCAATAAAACATCAAAAGAAA-------------------------------AAGAGGACCACTGGGATGGGAAGAACACTTCCAATGCACTACTGAAATCAACGTAAATGGCTGGGAAAGTGGGCCACAAAGTCTTCTATTTCAATGG---------------------TTGTAATAACACATCACTGTTGCATAT-AAAATGTATCTGCAAATAAGTCTATAATGACTGCTGATCATAAGATTTCTTGTTCTA-TTCACTCTGAAGTCTAAAAAAAAAAAAGA--AGCAAACTATCTACATAATCCAATCGAATACTCATT-ATGTAAAGTGCTGATAATGTATACCCTCTCATATA---------CAAAAAAAAAAAA----GGATTGTTTAAAATTGCTTAGCTCACAAGAGCCAATTACTTGGGCAGAATGGGGAAGGTGGTATGAATGTATAAATCTTACATATATGCTTTACCATGGAGGGATAGCTTATATGCATGTGGTTGAAATT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20710522 543 + 189454096 tgCAGTACATTTAATTTTGTGATTTTTTTTTGTTGTTGTT----------AAATAAAAAG-AAAAATCCTTGCAGGTTATATGAAGGTCACAACTGTCTCTTTGCATCAATAAAACATCAAAAGAAA-------------------------------AAGAGGACCACTGGGATGGGAAGAACACTTCCAATGCACTACTGAAATCAACGTAAATGGCTGGGAAAGTGGGCCACAAAGTCTTCTATTTCAATGG---------------------TTGTAATAACACATCACTGTTGCATAT-AAAATGTATCTGCAAATAAGTCTATAATGACTGCTGATCATAAGATTTCTTGTTCTA-TTCACTCTGAAGTCTAAAAAAAAAAAAGA--AGCAAACTATCTACATAATCCAATCGAATACTCATT-ATGTAAAGTGCTGATAATGTATACCCTCTCATATA---------CAAAAAAAAAAAA-AATGGATTGTTTAAAATTGCTTAGCTCACAAGAGCCAATTACTTGGGCAGAATGGGGAAGGTGGTATGAATGTATAAATCTTACATATATGCTTTACCATGGAGGGATAGCTTATATGCATGTGGTTGAAATT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16304609 541 + 178775436 TGCAGTACatttaattttgtgatttttttt--ttgttgtt----------aaataaaaag-aaaaatccttgcAGATTATATGAAGGTCACAACTGTCTCTTTGCATCaataaaacatcaaaagaaa-------------------------------aagaggaccACTAGGATGGGAAGAACACTTCCAATGCACTACTGAAATCAACGTAAATGGCTGGGAAAGTGGGCCACAAAGTCTTCTATTTCAATGG---------------------TTGTAATAACACATCACTGTTGCATAT-AAAATGTATCTGCAAATAAGTCTATAATGACTGCTGATCATAAGATTTCTTGTTCTA-TTCACTCtgaagtctaaaaaaaaaaaaga--atcaaactatCTACATAATCCAATCGAATACTCATT-ATGTAAAGTGCTAATAATGTATACCCtctcatata---------caaaaaaaaaaaa-aatggattgttTAAAATTGCTTAGCTCACAAGAGCCAATTACTTGGGCAGAATGGGGAACATGGTATGAATGTATAAATCTTACATATATGCTTTACCATGGAGGGATAGCTTATATGCATGTGGTTGAAATT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19792093 558 - 48547382 tgCAGTACATTTAATTTTGTGATTTTTT----TTGTTGTT----------AAATAAAAAG-AAAAATCCTTGTAGATTATATGAAGGTCACAGCTGTCTCTTTGCATCAATAAAGCATCAAAAGAAA-------------------------------AAGAGGACCACTGGGATGGGAAGAACACTTCCAATGCACTACTGAAATCAATGTAAATGGTTGGGAAAGTGGGCCACAAAGTCTTCTATTTCAATGGATAACTTTGTGTTATTGTCTATTTCAATAACACATCACTGTTGCATAT-AAAATATATCTGCAAATAAGTCTATAATGACTGCTGATCATAAGATTTCTTGTTCTA-TTCACTCTGAAGTCT---AAAAAAAAAGA--AGCAAACTATCTACATAGTCCAACTGAATACTCATT-ACGTAGAGTGCTAATAATGTATACCCTCTCATATA---------CAAAAAAAAAAAAAAATGGATTGTTTAAAATTGCTTAGTTCACAAGAGCCAATGACTTGGGCAGAATGGGGAAGGTGGTATGAATGTATAAATCTTACATACATGCTTTACCATGGAGGGATAGCTTATATGCATGTGGTTGAAATT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21146106 529 - 190850796 tgTTGTACATTTAATTTTGTAATATTTTTT-------CTT----------AAAC-AAGAG-AAAAATATTTGCAGATTACATCAGGGTCACAACTGCCTCTTTGCATCAATGAAACATC-AAAGGAA-------------------------------AAGAGGACTACTGGGATGGGAAGAACATTTCCAGTGCCCCACTGAAACAAATGTAAATGGTTGGGAAAGTTGGCCACAAAGTCTTCTACTTCAGTGG---------------------CTGTAATAACACATCAATGCTGCATATAAAAATGTATATGCAAAGACATCTACAATGACTGCTGACCAACAGATTTCTTGTTTTA-TTCACTCTAAAGTC----ACAAAAGGAGA--AGC-AACTATCTACATAATCCAATTGAATACTCATT-ACTTGAAGTGCTAATCACGTATACCCTCTCACATA---------CACACACACAAA--AATGGATGGTTTAAAACTGCTTAGATCACAATAGCCAATTACTTAGGCAGAATGGGGAAGGTGGTATGAGTTCAAAAATCTTACATATATGCCTTACCATGGCAGGATAGCGTATATGCATGTGGTTGAAACT i calJac3.chr3 C 0 I 367 s canFam3.chr3 3728921 488 - 91889043 TATATTACATCTAATTTTGTGAGATTTTAT-------GTTTCACTTTTACAAAT-AAGAG-AAAAACATTTGCAGATTACATCAAGGTCACCACTGTCCCTCTGCATCAATACAGCATCAAAGCAAAACAAACAAACAAACAAATAATAGATTTTTTTAAAAGGAATACTGGAGTAGGGAAAACACTTTAAAAACATTATTGAAATAAATTTCAATGGTTGGGAA------------AGCCTTTAATTTCAGCAG---------------------TAGTAAAAGCACATGACT--------C---------------------TCTATGAAGACTTCTGACCCTAAGATTTCTTTTTCTACTTCAATATGAAATC----AAAAACAATGAATAGC-AACACTCTACATAATCCAAGTGAATAACCAGT-ATGCAAAGTGCTAAAAATGCATGCCTTCTTACAAACTTCTGTGTCAAAAAAAAAA---TCTGGATCATTTGAAATTGCTCAGATCATAACAACCAATCTCTGGGGAAGAAT--GACAGGTATTGACAATGTGTAGAT-------------------------------------------------AAA-- i canFam3.chr3 C 0 C 0 e mm10.chr5 49132152 1793 + 151834684 I a score=114793.000000 s hg38.chr4_KI270790v1_alt 27434 38 + 220246 AGGAAACCCTCTCTCACCTATAAATTATAATTTAAGCA s panTro4.chr4 21414990 38 + 193495092 AGGAAACCCTCTCTCACCTATAAATTATCATTTAAGCA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21591437 38 + 198332218 AGGAAAACCTCTCTCACTTATAAATTATCATTTAAGCA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20203391 38 - 85365473 AGGAAACCCTCTCTCACTTATAAATTATCATTTAAGCA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16668602 38 + 184069350 AGGAAGCCCTCTCTCACTTATAAAATATCATTTAAGCA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20711065 38 + 189454096 AGGAAGCCCTCTCTCACTTATAAAATATCATTTAAGCA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16305150 38 + 178775436 AGGAAACCCTCTCTCActtataaaatatcatttaagca i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19792651 38 - 48547382 AGGAAACCCTCTCTCACTTACAAAATATCATTTAGGCA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21147002 38 - 190850796 aggaaATCCTCTCTCACTTATAAATTAGCATTTAAGTA i calJac3.chr3 I 367 C 0 s canFam3.chr3 3729409 24 - 91889043 -----------TCTCACGTACAGACTTTGA---AAGCA i canFam3.chr3 C 0 C 0 e mm10.chr5 49132152 1793 + 151834684 I a score=309926.000000 s hg38.chr4_KI270790v1_alt 27472 112 + 220246 TTCTG--------TAAAAATTTAAATTCATACTTAAGATTCAAATT---ATTTTTTCCATACAGAGcagggtttctcaattgccacactactgatatttgggactgggtaattcttcactgtg s panTro4.chr4 21415028 112 + 193495092 TTCTG--------TAAAAATTTAAATTCATACTTCAGATTCAAATT---ATTTTTTCCATACAGAGcagggtttctcaatcgccacactactgatatttaggactgggtaattcttcactgtg i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21591475 112 + 198332218 TTCTG--------TAAAAATTTAAATTCATACTTAAGATTCAAATT---ACTTTTTCCATACAGAGcagggtttctcaatcgccacactactgatatttgggactaggtaattcttcgctgtg i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20203429 112 - 85365473 TTCTG--------TAAAAATTTAAATTCATACTTAAGATTCAAATT---ATTTTTTCCATACAGAGcagggtttctcaattgccacactactgatatttgggactgggtaattcttcactgtg i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16668640 115 + 184069350 TCCTT--------AAAAAATTTAAATTCACACTTAAGATTCAAATTATCATTTTTTCCATTTGGAGcagggtttctcaatcaccacactactggcatttggggctgggtaattcttcactgtg i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20711103 115 + 189454096 TCCTT--------AAAAAATTTAAATTCACACTTAAGATTCAAATTATCATTTTTTCCATTCGGAGcagggtttctcaatcaccacactactggcatttggggctgggtaattcttcactgtg i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16305188 115 + 178775436 tcctt--------aaaaaatttaaattcacacTTAAGattcaaattatcattttttccattcagagcagggtttctcaatcACCACACTACTGGTATTTGGGGCTGGGTAATTCTTCACTGTG i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19792689 115 - 48547382 TCCTT--------AAAAAATTTAAATTCACACTTAAGATTCAAAGTATCATTTTTTCCATTCAGAGcagggtttctcaatcaccacactactggcatttggggctgggtaattcttcactgtg i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21147040 123 - 190850796 TCTCTATTTTTAAAAAATATGTAAATTTACACTTAAGATTCAAATTTTCATTTTTTCCATACAGAGcagggtttctcaagctccacaatattgatatttggggttgaacaattcttcgctgtg i calJac3.chr3 C 0 C 0 e mm10.chr5 49132152 1793 + 151834684 I e canFam3.chr3 3729433 0 - 91889043 C a score=1003431.000000 s hg38.chr4_KI270790v1_alt 27584 319 + 220246 gggaatgacatactcatgataagatgcttagaagaatctctggcctccacctactagatgctagaagcagtcccctagtctggagttgggactatcaaaaa----tggagaccaggccaaatgtcccctggggccaaaagcactcctagttgagaagcaatgGTCTCTAGAAATACCATGCAGTACATTCCTTCTTCC--AATAATAGATGCTAATCACAAGCACACAAGatagccacaattatatgatgtttactacttgccagacacatagtagctcattttaattttcacaaaagtcaaatgacctatataccataactacc s panTro4.chr4 21415140 319 + 193495092 gggaatgacatactcatgataagatgcttagaaggatctctggcctccacctactagatgctagaagcagtcccctagtctggagttgggactatcaaaaa----tggagaccaggccaaatgtcccctggggccaaaagcactcctagttgagaagcaatgGTCTCTAGAAATACCATGCAGTACATTCTTTCTTCC--AATAATAGATGCTAATCACAAGCACACAAGatagccacaattatatgatgtttactacttgccagatacatagtagctcattttaattttcacaaaagtcaaatgacctatataccgtaactacc i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21591587 319 + 198332218 gggaatgacatactcatgataagttgcttagaagaatctctggcctccacctactagatgctagaagcagtcccctagtctggagttgggactatcaaaaa----tggagaccaggccaaatgtcccctgggggcaaaagcactcctagttgagaaccaatgGTCTCTAGAAATACCATGCAATACATTCTTTCTTCC--AATAATAGATGCTAATCACAAGCACACAAGatagccacaattatatgatgtttactacttgccagatacatagtagctcattttaattctcacaaaagtcaaatgacctatataccataactacc i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20203541 319 - 85365473 gggaatgacatactcatgataagatgctcagaagaatctctggcctccacctactagatgctagaagcagtcccctagtctagagttgggactatcaaaaa----tggagaccaggccaaatgtcccctgggggcaaaagcactcctcgttgagaaccaatgGTCTCCAGAAATACCATGCAGTACATTCTTTCTTCC--AATAATAGATGCTAATCACAAGCACACAAGatagccacaattatatgatgtttactacttgccagatacgtagtagctcattttaattctcacaaaagtcaaatgacctatataccataactacc i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16668755 301 + 184069350 gggaatgac----------------------aagaatctctggcctccaactactagatgctagaagaagtccccccgtctggagttgggactatcaaaaatgtctggagacacggccaaatgtcccctgggggcaaaaacattcctagttgagaaccaatgATCTCTAGAAATATCATGCAGTACATTCTTTCTTCC--AATAATAGATGCTAATCACAAGCACATAAGatagccacaattatatgatgtttactacttgccagatacatagtagctcattttaattctcacaaaagtcaaatgacctatataccataactacc i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20711218 301 + 189454096 gggaatgac----------------------aagaatctctggcctccaactactagatgctagaagaagtccccccgtctggagttgggactatcaaaaatgtctggagacacggccaaatgtcccctgggggcaaaaacattcctagttgagaaccaatgATCTCTAGAAATATCATGCAGTACATTCTTTCTTCC--AATAATAGATGCTAATCACAAGCACATAAGATAGCCACAATTATATGATGTTTACTACTTGCCAGatacatagtagctcattttaattctcacaaaagtcaaatgacctatataccataactacc i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16305303 301 + 178775436 GGGAATGAC----------------------AAGAATCTTTGGCCTCCAACTACTAGATGCTAGAAGAAGTCCCCCCGTCTGGAGTTGGGACTATCAAAAATGtctggagacacagccaaatgtcccctgggggcaaAAACATTCCTAGTTGAGAACCAACGATCTCTAGAAATATCAGGCAGTACATTCTTTCTTCC--AATAATAGATGCTAATCACAAGCACATAAGATAGCCACAATTATATGATGTTTACTACTTGCCAGATACATAGTAGCtcattttaattctcacaaaagtCAAATGACGTATATACCATAACTACC i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19792804 324 - 48547382 gggaatgacatactcatgataagatgcttagaagaatctctggccttcaactactagatgctagaagaagtccccccatctggagttgggactatcaaaaatgtctggagacacggccaaatgtcccctgggggc-aaaccactcctagttgagaaccagtgATCTCTAGAAATATCATGCAGTACATTCTTTCTTCCAAAATAATAGATGCTAATCACAAGCACACAAGATAGTCACAATTATATGATGTTTACCACTTGCCAGatacatagtagctcattttaattctcacaaaagtcaaatgacctatataccataactacc i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21147163 321 - 190850796 gggaatgacatattcataataagatgcttagcagaatctctggcctctgcctactagatactagaagcagtcccccagcctggagttgggacgattaaaaatgtctggaaacaaggccaaatgtcccctgggtgcaaaagcactcctagctgagaaccagtgATCTCTAGAGATACCATGTAGTACATTCTTTCTTCC--AATAATAGACGCTAATCACAAGCACATAAAATACCTACCATTATATGATGTTTACTACTTGCCAGATACAGAGTAGCTTATTTTAATTCTCACAAAAGTCAAATGACATATATAC--TAACAACC i calJac3.chr3 C 0 C 0 s canFam3.chr3 3729433 292 - 91889043 GGGAGAG-----CTcattataagacgtccagcaacgtttctggcttctgcctattagatgttagag--catcttctgaccttgagctgtgacaatcagaaacattt----------ccaaatatcccctggggt--aagccgcccccagttgaaaaccaACGATCTGCAGAAATACAAGGCAAACCTCCCTTTCTTCT--AACACTAGATGCTAATAACAAGCATA-AAAATAGCCACGAGAATATGATGTTTACTATTTGTCAGACAGAGAGta-ctcctctt----------aaagccaaatgccttatgtattattattacc i canFam3.chr3 C 0 C 0 e mm10.chr5 49132152 1793 + 151834684 I a score=116092.000000 s hg38.chr4_KI270790v1_alt 27903 40 + 220246 tgatacaatttggatgcttgtcccctccaaatctcatgtt s panTro4.chr4 21415459 40 + 193495092 tgatacaatttggatgcttgtcccctccaaatctcatgtt i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21591906 40 + 198332218 tgatacaatttggatgcttgtcccctccaaatctcatgtt i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20203860 40 - 85365473 tgatacaatttggatgcttgtcccctccaaatctcatgtt i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16669056 40 + 184069350 taacataatgtggatgtttgtcccctccaaatctcatgtt i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20711519 40 + 189454096 taacataatgtggatgtttgtcccctccaaatctcatgtt i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16305604 40 + 178775436 TGACATAAtgtggatgtttgtcccctccaaatctcatgtt i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19793128 40 - 48547382 tgatataatgtggatgtttgtcccctccaaatctcatgtt i chlSab2.chr27 C 0 I 348 s calJac3.chr3 21147484 40 - 190850796 taatataatttggatgtttgtctcctccaacaatcatgtt i calJac3.chr3 C 0 C 0 e mm10.chr5 49132152 1793 + 151834684 I e canFam3.chr3 3729725 0 - 91889043 C a score=1095059.000000 s hg38.chr4_KI270790v1_alt 27943 370 + 220246 gaaatgtgatccccc--------atggtgaatgtggggcctggtgggaggggttttggtcatggggtggatccctcacgaatggctcaataacct-ccccatagtaatgagtgaattctcactctattacttactgtgacatctggttgtttaaaagagcctgacatttctcttgctccctctctcatcatatgacatgcctgctccccctttgctttaaataaaagcttccttaggcctcactagaagcc-aagcagatgctggtaccatgtctcccatacagcctgcagaactgtgacccaactaaacatttttattttttaaaataaattacccagccccagcaattcctttataacaatccaaaatgggctaatac s panTro4.chr4 21415499 370 + 193495092 gaaatgtgatccccc--------atggtgaacgtggggcctggtgggaggggttttggtcatggggtggatccctcatgaatggctcaataacct-ccccatagtaatgagtgaattctcattctattacttactgtgacatctggttgtttaaaagagcctgacgtttctcttgctccctctctcatcatatgacatgcctgctccccctttgctttaaacaaaagcttccttaggcctcactagaagcc-aagcagatgctggtaccatgtctcccatacagcctgcagaactgtgacccaactaaacatttttatttttaaaaataaattacccagccccagcaattcctttataacaatccaaaatgggctaatac i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21591946 368 + 198332218 gaaatgtgatccccc--------atggtgaaggtggggcctggtgggaggggttttggtcatggggtggatccctcatgaatagctcaataacct-ccccatagtaatgagtgaattctcactctattacttactgtgacatctggttgtataaaagagcctaacatttctcttgctccctctc---tcatatgacatgcctgctccccctttgctttaaataaaagcttccttaggcctcactagaagccaaagcagatgctggtaccatgtctctcatacagcctgcagaactgtgacccaactaaacgttttttttttttcaaataaattacccagccccagcaattcctttacaacaatccaaaatgggctaatac i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20203900 371 - 85365473 gaaatgtgatccccc--------atggtgaaggtggggcctggtgggaggggttttggtcatggggtggatccctcatgagtcgctcaataacctcccccatagtaatgagtgaattctcactctgttacttactgtgacatctggttgtttaaaagagcccgacatttctcttgctccctctctcatcatatgacatgcctgctccccctttgctttaaataaaagcttccttaagcctcactagaagcc-aagcagatgctggcaccatgtctcctatacagcctgcagaactgtgacccaactaaacgtttttattttttaaaataaattacccagccccagcaattcctttataacaatccaaaatgggctaatac i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16669096 370 + 184069350 gaaatatgatccccc--------atggtgatggtggggcctggtgggaggggtttttgtcatggggtggatccttcatgaatggttcaatatcct-ccccagagtaatgagtgaattctcactgtattacttactgtgacatctggttgtttaaaagagcccgacagttctcttgctccctgtctcatcatatgacatgcctgctcccccttttctttaaataaaagcttccttaggcctcactagaagcc-aagcagatgctggtaccatgtctcctacacagcctacagaactgtgacccaactaaatgtttttaatttttaaagtaaattacccagcctcagcaattcctttataacaatccaaaatgggctaatac i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20711559 370 + 189454096 gaaatatgatccccc--------atggtgatggtggggcctggtgggaggggtttttgtcatggggtggatccttcatgaatggttcaatatcct-ccccagagtaatgagtgaattctcactgtattacttactgtgacatctggttgtttaaaagagcccgacagttctcttgctccctgtctcatcatatgacatgcctgctcccccttttctttaaataaaagcttccttaggcctcactagaagcc-aagcagatgctggtaccatgtctcctacacagcctgcagaactgtgacccaactaaatgtttttaatttttaaagtaaattacccagcctcagcaattcctttataacaatccaaaatgggctaatac i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16305644 370 + 178775436 gaaatatgatcccCC--------ATGGTGATggtgggggctggtgggaggggtTTTGGTCatggggtggatccttcatgaatggctcaATGTCCT-CCCCATAGTAATGAGTGAATTCCCACTGTATTACTTACTGtgacatctggttgtttaacAGAGCCAGACATTTCTCCTGCTCCCTCTCTCATCAtatgacatgcctgctcccccttttctttaaataaaagcttCCTTAGGCCTcactagaagcc-aagcagatgctggtaccatgTCTCCTacacagcttgcagaactgtgacccaacaaaatgtttttatttttttaagtaaattacccagcctcagcaATTCCTTTATAACAATCcaaaatgggctaatac i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19793516 370 - 48547382 gaaatatgatccccc--------atggtgatggtggggcctggtgcgaggggttttggtcatagggtggatccttcatgaatggctcaatgtcct-ccccatagtaatgagtgaattctcactgtattacttactgtgacatctggttgtttaaaagagtccgacatttctcttgctccctctctcatcatatgacatgcctgctcccccttttctttaaataaaagcttctttaggcctcactggaagcc-aagcagatgctggtaccctgtctcctacacagcctgcagaactgtgacccaactaaacgtttttaattttttaagtaaattacccagcctcagcaattcctttctaacaatccaaaatgggctaatac i chlSab2.chr27 I 348 C 0 s calJac3.chr3 21147524 376 - 190850796 gaaatgtgaacccccccgccccaatattgaaagtggagcctggtgggaggggttttggtcatagggtggattccttatggatgactcagtaccct-ccccatggtaattagtgaattctcactgtattacttacagtgacatctggttgtttaaaagagcccagcatttctcttgctccctctctcatcatatgacatgtctgctccccctctgctataaataaaagcttcctaaagcctcattagaagcc-aagcagatgctggtaccatgtctcctttatagcctgcagaaccatgagcctactaaaccttttaattttttaaaataaattacccagcttcagcaattcctttctagcaatgcaaaatgggctaat-- i calJac3.chr3 C 0 C 0 e mm10.chr5 49132152 1793 + 151834684 I e canFam3.chr3 3729725 0 - 91889043 C a score=19256.000000 s hg38.chr4_KI270790v1_alt 28313 6 + 220246 actact s panTro4.chr4 21415869 6 + 193495092 actact i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21592314 6 + 198332218 actact i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20204271 6 - 85365473 actact i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16669466 6 + 184069350 actact i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20711929 6 + 189454096 actact i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16306014 6 + 178775436 actaCT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19793886 6 - 48547382 actact i chlSab2.chr27 C 0 C 0 s mm10.chr5 49133945 6 + 151834684 ATTACT i mm10.chr5 I 1793 C 0 e calJac3.chr3 21147900 0 - 190850796 C e canFam3.chr3 3729725 0 - 91889043 C a score=3682947.000000 s hg38.chr4_KI270790v1_alt 28319 1087 + 220246 tctatgttactaatgatgagactgagtcatagaga-------agtgacttgttcagacagtaaagggagcctggatttg-aaaaagggcagtggggcATAGAAGGATA----AAGTCCTAAATGAGATTAACTTTGGGACAATTGGATTCCAGAGAGAC--TG--GATACATGGGTAGTATATCCTATAGAACCCT-C--TGctcacatgttaaatctgggagctgagctagat---ttcagaagtcccttccactactaacaatctgtaagtctgtaaATTGTAGACAAATCTATTTGGTTAGATTTATTCCAATAAAAGCAAGCTGACCACATGTCAGATAAGGTCCAGCTAC---AGCATAATGG--CATGATGGCAGCCTTCCATCTTCACTGATTTAAATTCGTGCTGTTTTAGTGCATATAACCCCCTTAGATTTGTCTGCTATGAGAAAATTCTGCAAGGAAGAGAAGG-CTGCTTACAAAACAGTCTTT-CAAATTTCTCCATGGATCTCATTGGCAGGT---------CTTCAAGGTCAGGACCAATCACAGACATGGCTGGA--GAATGCCCATAAACTCTTCCTCCTCTAATAGCCAATGGG-------------------------AGAAAGGGATTAACTGCTGGTCAGATGACTGTGACTATTAACATTGGAAGC---AATTCTGTGCTTGAAAACTTGATCAGTCAAAGAGGGTAAACTACATTAATAATGGGCACTGGAAGGAGGGAGCTCTTT---TTCACCGA-------------AGT-------------CCCCATGGTCACAACAAA-TTAGATTAG---AGTGCCTGAGA-----------------------ATATGCTAA-----------------ATTC------------------------------------------------ATAGCCTCATCGAAAATTTCTCTTTAGTACTTTATCTGTCGCTAGTCTCTCTTCTCTTGCAATGGGTCATTTCAGCTGCTGCTA--AAACCAGCTTTCTATTACAGTTTCTCCTCATGTCATACAATTCCTTAAAGGCTGAT-AGCATCATCGGTCCCTGAT----------TCTTGTCCATTTAACCTCCCTAC--------------CCATAGAT------ACAATCCAAGACTGGTACTC--ATAAAT---TCCAAAGGAAAAATAAAGCTGCATATTGCTACCTCT-ATGACAGGTTA-CTTTTGGGGAATAGAAGATTCCAGGACAGCTATTTCCTGTGTTTATTGATTATGAATCTT s panTro4.chr4 21415875 1091 + 193495092 tctatgttactaatgatgagactgagtcatagaga-------agtgacttgttcagacagtaaagacagcctggatttg-aaaaagggcagtggggcATAGAAGGACA----AAGTCCTAAATGAGATTAACTTTGGGACAACTGGATTCCAGAGAGAC--TG--GATACATGGGTAGTATATCCTATAGAACCCT-C--TGctcacatgttaaatatgggagctgagttagatgacttcagaagtcccttccactactaacaatctgtaagtctgtaaATTGTAGACAAATCTATTTGGTTAGATTTATTCCAATAAAAGCAAGCTGACCACATGTCAGATAAGGTCCAGCTAC---AGCATAATGG--CATGATGGCAGCCTTCCATCTTCACTGATTTAAATTCGTGCTGTTTTAGTGCATATATCCCCCTTAGATCTGTCTGCTATGAGAAAATTCTGCAAGGAAGAGAAGG-CTGCTTACAAAACAGTCTTT-CAAATTTCTCCATGGATCTCATTGCCAGGT---------CTTCAAGGTCAGGACCAATCACAGACATGGCTGGA--GAATGCCCATAAACTCTTCCTCCTCTAATAGCCAGTGGG-------------------------AGAAAGGGATTAACTGCTGGTCAGATGACTGTGGCTATTAACACTGGAAGC---AATTCTGTGCTTGAAAACTTGATCAGTCAAAGAGGGTAAACTAAATTAATAATGGGCACTGGAAGGAGGGAGCTCTTT---TTCACCTA-------------AGT-------------CCCCATGGTCACAACAAA-GTAGA--------GTGCCTGAGA-----------------------ATATGCTAA-----------------ATTCCATTCC------------------------------------------ATAGCCTCATCGAAAATTTCTCTTTAGTACTTTATCTGTCGCTAGTCTCTCTTCTCTTGCAATGGGTCATTTCAGCTGCTGCTA--AAACCAGCTTTCTATTACAGTTTCTCCTCATGTCATACAATTCCTTAAAGGCTGAT-AGCATCATCGGTCCCTGAT----------TCTTGTCCATTTTACCTCCCTAC--------------CCACAGAT------ACAATCCAAGACTTGTACTC--ATAAAT---TCCAAAGGAAAAATAAAGCTGCGTATTGCTACCTCT-ATGATAGGTTA-CTTTTGGGGAATAGAAGATTCCAGGACAGCTATTTCCTGTGTTTATTGATTATGAATCTT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21592320 1110 + 198332218 tctatgttactaatgatgagactgagtcataaaga-------ggtgacttgttcagacagtaaagagagcctggatttg-aaaaagggcagtggggcATAGAAGGATA----AAGTCCTAAATGAGATTAACTTTGGGACAATTGGATTCCAGAGAGAC--TG--G-TACATGGGTAGTATATCCTATAGAACCCT-C--TGctcacatgttaaatctgggagctgagctagatgacttcagaagtcccttccacaactaacaatctgtaagtctgtaaATTGTAGACAAATCTATTTGGTTAGATTTATTCCAATAAAGGCAAGCTGACCACATGTCAGATAAGGTCCAGCTAC---AGCATAATGG--CATGATGGCAGCCATCCATCTTCACTGATTTAAATTCGTGCTGTTTTAGTGCATATATCCCCCTTAGATCTGTCTGCTATGAGAAAATTCTGCAAGGAAGAGAAGG-CTGCTTACAAAACAGTCTTT-CAAATTTCTCCATGGATCTCATTGCCAGGT---------CTTCAAGGTCAGGACCAATCACAGACATGGCTGGA--GAATGCCCATAAACTCTTCCTCCTCTAATAGCCAGTGAG-------------------------AGAAAGGGATTAACTTCTGGTCAGATGACTGTGACTATTAACATTGGAAGC---AATTCTGTGCTTGAAAACTTGATCAGTCAAAGAGGGTAAACTAAATTAATAACGAGCACTGGAAGGAGGGAGCTCTTT---TTCACCTA-------------AGT-------------CCCCATGGTCACAACAAA-TTAGATTAG---AGTGCCTGAGA-----------------------ATATGCTAA-----------------ATTCCTTTCC------------------------------------------ATAGCCTCATTGAAAATTTCTCTTTAGTACTTTATCTGTCTCTAGTCTTTCTTCTCTTGCAATGGGTCATTTCAGCTGCTGCTA--AAACCAGCTTTCTATTACAGTTTCTCCTCATGTCATACAATTCCTTAAAGGCTGAT-AGCATCATCTGTCCCTGAT----------TCTTGTCCATTTAACCTCCCTACAATCTTAGATACAACCTTAGAT------ACAATCCAAGACTTGTACTC--ATAAAT---TTTAAAGGAAAAATAAAGCTGCATATTGCTACCTCTAATGGTAGGTTA-CTTTTGGGGAATAGAAGATTCCAGGACAGCTACTTCCTGTGTTTATTGATTATGAATCTT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20204277 1095 - 85365473 tctatgttaccaatgatgagactgagtcataggga-------agtgacttgttcagacagtaaagaaagcctggatttg-aaaaagggcagtggggcATAGAAGGATA----AAGTCCTAAATGAGATTAACTTTGGGACAATTGGATTCCAGAGAGAC--TG--GATACATGGGTAGTATATCCTATAGAACCCT-C--TGctcacatgttaaatctgggagctgagctagttgacttcagaagtcccttccactactaacaatctgtaagtctgtaaATTGTAGGCAAATCTATTTGGTTAGATTTATTCCAATAAAGGCAAGCTGACCACATGTCAGGTAAGGTCCAGCTAC---AGCATAATGG--CATGATGGCAGCCACCCATCTTCACTGATTTAAATTCGTGCTGTTTTAGTACATATATCCCCCTTC-ATCTGTCTGCTATGAGAAAATTCTGCAAGGAAGAGAAGG-CTGCTTACGAAACAGTCTTT-CAAATTTCTCCATGGATCTCATTGCCAGGT---------CTTCAAGGTCAGGACCAATCACAGACATGGCTGGA--GAATGCCCATAAACTCTTCCTCCTCTAATAGCCAATGGG-------------------------AGAAAGGGATTAACTGCTGGTCAGATGACTGTGACTATTAACATTAGAAGC---AATTCTGTGCTTGAAAACTTGATCAGTCAAAGAGGGTAAACTAAATTAATAATGAGCACTGGAAGGAGGGAGCTCTTT---TTCACCTA-------------AGT-------------CCCCGTGGTCACAACAAA-TTAGATTAG---AGTGCCTGAGA-----------------------ATATGCTAA-----------------ATTCCATTCC------------------------------------------ATAGCCTCATTGAAAATTTCTCTTTAGTACTTTATCTGTCTCTAGTCTCTCTCCTCTTGCAATGGGTCATTTCAGCTGCTGCTA--AAACCAGCTTTCTATTATAGTTCCTCCTCATGTCATACAATTCCTTAAAGGCTGAT-AGCATCATCTGTCCCTGAT----------TCTGGTCCATTTAACCTCCCTAC--------------CCATAGAT------ACAATCCAAGACTTGTACTC--ATAAAT---TCCAAAGGAAAAATAAAGCTGTATATTGCTACCTCT-ATGGTAGGTTA-CTTTTGGGGAATAGAAGATTCCAGGACAGCTACTTCCTGTGTTTATTGATTATGAATCTT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16669472 1096 + 184069350 tctatatcactaatgatgaggttgagtcatagaga-------agtgacttgttcggacagtaaagagagcctgggtttgaaaaaagggcagtggggcctagaAGGATA----AAGTCCTAAATGAGATTAACTTTGGGACAACTGGATTCCAGAGAGAC--TG--GATACATGGGTAGTATATCCTATAGAAcact-c--tgctcacacgttaaatctgggagttgagctagatgacttcagaggttccttccagtactaacaatctgtaagtctctaaATTGCAGGCAAATCTATTTGGCTAGATTTCTTCCAATAAAGGCAAGGTGACCACATGACAGATAAGGTCCAGCTAC---AGCATAATGG--CATGATGGCAGCCATCCATCTTCACTGATTTATATTCGTGCTGTTTTTGTGCATATATCCCCCTTAGATCTGTCTGCTATGAGAAAATTCTGCGAGGAAGAGAAGG-CTGCTTACAAAACAGTCTTT-CACATTTCTCCATGGATCTCCTTGCAAGGT---------CTTCAAGGTCATGACCAATCACAGACATGGCTGGA--GAATGCCCATAAATTCTCCCTCCTCTAATAGCCAATGGA-------------------------AGAAAAGGATTAACTGCTGATCAGATGACTGTGACTATTAACATTGGAAGC---AATTCTGTGCTTGAAAACTTGATCAGTCAAAGAGGGTAAACTAAATTAATAATGAGCATGGGAAGGAGTGAGTTCTTT---TTCACCTA-------------AGT-------------CCCCATGGTCACACCAAA-TTAGATTAG---AGTGCCTGAGA-----------------------ATATGCTAA-----------------ATTCCAGTCC------------------------------------------ATAGCCTCATTGAAAATTTCTGTTAAGTACTTTATCTGTCTGTAGTCTCTCTCCTCTTGCAATGGGTCATTTCGGCTGCTGCTT--AAATTAGCTTTCTGTTACAGTTCCTCCTCATGTCATATAATTCCTTAAAGCCTGAT-AGCATCATCTGTCCCTGAT----------TCTTGCCCATTTAACC-CCCTAT--------------GCATAGAT------ACAATCCAAGACTTGTACTC--ATAAAT---CCCAAAGTAAAAATAAAGCTGTATATTGCTACCTCT-ATGGTAGGTTA-CTTCTGCGGAATAGAAGATTTCAGGACAGCTACTTCCTGTGTTTATTGATTATGAATCTT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20711935 1096 + 189454096 tctatatcactaatgatgaggttgagtcatagaga-------agtgacttgttcggacagtaaagagagcctgggtttgaaaaaagggcagtggggcctagaAGGATA----AAGTCCTAAATGAGATTAACTTTGGGACAACTGGATTCCAGAGAGAC--TG--GATACATGGGTAGTATATCCTATAGAACACT-C--TGCTCACACGTTAAATCTgggagttgagctagatgacttcagaggttccttccagtactaacaatctgtaagtctctaaaTTGCAGGCAAATCTATTTGGCTAGATTTCTTCCAATAAAGGCAAGCTGACCACATGACAGATAAGGTCCAGCTAC---AGCATAATGG--CATGATGGCAGCCATCCATCTTCACTGATTTATATTCGTGCTGTTTTTGTGCATATATCCCCCTTAGATCTGTCTGCTATGAGAAAATTCTACGAGGAAGAGAAGG-CTGCTTACAAAACAGTCTTT-CACATTTCTCCATGGATCTCCTTGCAAGGT---------CTTCAAGGTCATGACCAATCACAGACATGGCTGGA--GAATGCCCATAAATTCTCCCTCCTCTAATAGCCAATGGA-------------------------AGAAAAGGATTAACTGCTGATCAGATGACTGTGACTATTAACATTGGAAGC---AATTCTGTGCTTGAAAACTTGATCAGTCAAAGAGGGTAAACTAAATTAATAATGAGCATGGGAAGGAGTGAGTTCTTT---TTCACCTA-------------AGT-------------CCCCATGGTCACACCAAA-TTAGATTAG---AGTGCCTGAGA-----------------------ATATGCTAA-----------------ATTCCAGTCC------------------------------------------ATAGCCTCATTGAAAATTTCTGTTAAGTACTTTATCTGTCTGTAGTCTCTCTCCTCTTGCAATGGGTCATTTCGGCTGCTGCTT--AAATCAGCTTTCTGTTACAGTTCCTCCTCATGTCATATAATTCCTTAAAGCCTGAT-AGCATCATCTGTCCCTGAT----------TCTTGCCCATTTAACC-CCCTAT--------------GCATAGAT------ACAATCCAAGACTTGTACTC--ATAAAT---CCCAAAGTAAAAATAAAGCTGTATATTGCTACCTCT-ATGGTAGGTTA-CTTCTGCGGAATAGAAGATTTCAGGACAGCTACTTCCTGTGTTTATTGATTATGAATCTT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16306020 1117 + 178775436 TCTATGTCACTAATGATGAGGTTGAGTCATAGAGA-------AGTGACTTGTTCAGACAGTAAAGAGAGCCTGGATTTGAAAAAAGGGCAGTGGGGCCTAGAAGGATA----AAGTCCTAAATGAGATTAACTTTGGGACAAGTGGATTCCAGAGAGAC--TG--GATACATGGGTAGTATATCCTATAGAATCCT-C--TGCTCACACGTTAAATCTGGGAGTTGAGCTAGATGACTTCAGAGGTTCCTTCCACTACTAACAATCTGTAAGTCTCCAAATTGCAGGCAAATCTATTTGGCTAGATTTATTCCAATAAAGGCAAGCTGACCACATGACAGATAAGGTCCAGCTAC---AGCATAATGG--CATGATGGCAGCCATCCATCTTCACTGATTTAAATTCGTGCTGTTTTAGTGCAGATATCCCCCTTAGATCTGTCTGCTATGAGAAAATTCTGCGAGGAAGAGAAAG-CTGCTTACAAAACAGTCTTT-CAAATTTCTCCATGGATCTCATTGCAAGGT---------CTTCAAGGTCATGACCAATCACAGACATGGCTGGA--GAATGCCCACAAATTCTCCCTCCTCTAATAGCCAATGGAAGAAAAGGATTAACTGCTGATCAAGAGAAAAGGATTAACTGCTGATCAGATGACTGTGACTATTAACATTGGAAGC---AATTCTGTGCTTGAAAACTTGA----TCAAAGAGGGTAAACTAAATTAATAATGAGCATGGGAAGGAGTGAGTTCTTT---TTCACCTA-------------AGT-------------CCCCATAGTCACACCAAA-TTAGATTAG---AGTGTCTGAGA-----------------------ATATGCTAA-----------------ATTCCAGTCC------------------------------------------ATAGCCTCATTGAAAATTTCTGTTTAGTACTTTATCTGTCTCTAGTCTCTCTCCTCTTGCAATGGGTCATTTCGGCTGCTGCTA--AAATCAGCTTTCTGTTACATTTCCTCCTCATGCCATACAATTCCTTAAAGCCTGAT-AGCATCATCTGTCCCTGAT----------TCTTGCCCATTTAACC-CCCTAG--------------GCATAGAT------ACAATCCAAGACTTGTACTC--ATAGat---cccaaaggaaaaataaagctgtATATTGCTACCTCT-ATGGTAGGTTA-CTTCTGGGGAATAGAAGATTTCAGGACAGCTACTTCCTGTGTTTATTGATTATGAATCTT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19793892 1121 - 48547382 tgtatgtcactaatgatgaggttgagtcatagaaa-------agtgacttgttcagacagtaaagagagcctggatttgaaaaaagggcagtggggcctagaAGGATA----AAGTCCTAAACGAGATTAACTTTGGGACAACTGGATTCCAGAGAGAC--TG--GATACATGGGTAGTATATCCTATAGAACCCT-C--TGctcacacgttaaatctgggagttgagctagatgacttcagaggttccttccactactaacaatctgtaagtctctaaATTGCAGGCAAATCTATTTGGCTAGATTTATTCCAATAAAGGCAAGCTGACCACATGACAGATAAGGTCCAGCTAC---AGCATAACGG--CATGATGGCAGCCATCCATCTTCACTGATTTAAATTCGTGCTGTTTTAGTGCATATATTCCCCTTAGATCTGTCTGCTATGAGAAAATTCTGCGAGGAAGAGAAGG-CTGCTTACAAAACAGTCTTT-CAAATTTCTCCATGGATCTCATTGCAAGGT---------CTTCAAGGTCATGGCCAATCACAGACACAGCTGGA--GAATGCCCACAAATTCTCCCTCCTCTAATAGCCAATGGGAGAAAAGGATTAACTGCTGATCAAGAGAAAAGGATTAACTGCTGATCAGATGACTGTGACTATTAACATTGGAAGC---AATTCTGTGCTTGAAAACTTGATCAGTCAAAGAGGGTAAACTAAATTAATAATGAGCACGGGAAGGAGTGAGTTCTTT---TTCACCTA-------------AGT-------------CCCCATAGTCACACCAAA-TTAGATTAG---AGTGTCTGAGA-----------------------ATATGCTAA-----------------ATTCCAGTCC------------------------------------------ATAGCCTCATTGAAAATTTCTGTTTAGTACTTTATCTGTCTCTAGTCTCTCTCCTCTTGCAATGGGTCATTTCGGCTCCTGCTA--AAATCGACTTTCTGTTACAGTTCCTCCTCATGTCATACAATTCCTTAAAGCCTGAT-AACATCATCTTTCCCTGAT----------TCTTGCCCATTTAACC-CCCTAT--------------GCATAGAT------ACAATCCAAGACTTGTACTC--ATAGAT---CCCAAAGGAAAAAAAAAGCTGTATATTGCTACCTCT-ATGGTAGGTTA-CTTCTGGGGAATAGAAGATTTCAGGACAGCTACTTCCTGTGTTTATTGATTATGAATCTT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21147900 1094 - 190850796 ------------------aAATTGAGTCACAGAGA-------AGTGACTTGTTCAGATACTAAGG--AGCCTGGATTTGAAAAAAGGGCAGTGGGGCTTATAAGGAAA----AAGTCCTAAATGTGATTAACTTTGGGACATTTGGATTCCAGAGAGAC--TG--GATCTATGGGTAGCATATCCTACAGAATCCT-C--TGCTCACGTGTTAAATCtgggagctcaactacatgacttcaggggtcctttccacaactaacaatctgtaagtctCTAAATTATAGACAAATGTATTTGGCTAGATTTATTCCAATAAAGGCAAGGTGACCACATGTCAGATAAGGTCCAGCTAT---AGCCATCTAGCTCATAATGGTAGCCATCCATCTTCACTGATTTAAATTCATGCTACTTTAAGGCCTATAACCCCCTCCGATCTGTCTGCTATGAGAAAATTCTGCAAGGAAGAGAAGG-CTGCTTACAAAACAGCCTTT-CAGATTTCTCCATGGATCTCATTGCAAGGT---------CTTCAAGGTCATGGCCAATCACAAACATGGCTGGA--GAATGCCCATAAATTCTCCCTCCTCCAATGGCCAATAGG-------------------------AGAAAGGGATTAACTGCTGGTCAGATGATTATGACTATTAACATTGAAAGT---AATTCTGTGCTTGAAAACTTGATCAGTCAAAGAGGGTAAACTAAATTAATAATGAGCACTGGAAGGAGG--GTTTTTT---TTCACCTAAGACAACTATTTTAGT-------------CCCCATGGTCACAACAAATTTAAATTAG---AGTACCGGAGA-----------------------ACACGCCAA-----------------ATTCCATTCC------------------------------------------ATAGCCTCACTGAAAATTTCTCTTTATTACTTTATCTGTCTCTAGTCTCTCTCCTCCTTCAATGGATTATTTCAGCTCCTGCTA--AAACCAGAGTTCTGTTAAAGTTCCTCCTTATGTCATACAATTCCTTAAAGCCTGAT-ACCATCATCTGTCCCTGAT----------TCTTATTCATTTAACCGCCCTAT--------------CCATAGAC------ACAATCCAAGACTTGTACTC--ATAAATTCCCCCAAAATAAAAATAAAGTTGTATATTGCTATCTAT-ATGGCAGGTTA-CTTTTGGGGAACAGAAGATGTGAGGACAGCTACTTCCTGTGTTTATTGATTATGAATTTT i calJac3.chr3 C 0 C 0 s mm10.chr5 49133951 1109 + 151834684 TTTGTACTGGTGATGATGAAAATGAATCAAAGAAA---------------GTTAAGTCAG-------AGCCCAGATTTGAATAAA-------------CAGAAACAGA----TACTTCTAG--GACATGGGTTTGCAATCACCAGGACTGCAGACTGAC--TTTCAAAACCTGGACAGTGTATCTTATGGCATTTTCC--TGCTCACTAGCTAAA-CAGAGATCTATATTCAATGACCTCAGAGGTCTCGTCCA-----------TTGTGGGTCTCTAAATTTTAGATGAATCAATTTGGTCAGATTTGTTTCCATAAAGGCAAGATCAGTATATATTAGATATTGTACAGCTGTAGAAGCCTAGTTG--C-TAATGTCAGCCATCCATCTTTACTGATTGAAATTCATGCTG-TTTAATTCCTGTGA-CCTCTTGGAACTCTCTTCAAGGACAACATTTGACAGGGAAGACAAAGTCTGCTTCCAATACATTCCTTGCAAATGTCTCCATGT-TCTTACTGCAAAGTTTTCAATGCCTTCAAGGTTATATAGGATCACAGGCATTTTCAAA--GAATATGCAT-AACTCTGCATTTCTTACCAG------------------------------------------TTGACTTTTGGACAGGTG--TGCAAATATTAACATTGAATATCTGGACATGGTGTTGGAAAATAT----ACCTTCAGATTACATGGTATATTAATGAACAACTCTTGATGGGAACAGTTCCCTAGCCTGACGTG-------------ACTAAA-------GAGCCCCATGCTTATGGAAAA-TCAAATTAT---AGTGCATGAAGGCTAGGGCTTTGATTCAGTCACCATGTGCAAAACAATGGCAGAGCCTTGACTTCAGTACATGAGGCAGAGCAATGCAATAGATGTGGCAAACTAAGTTTTTATATCCTCATTGAAAATACATCTACAATA--------GTTTTTGTTCTCTACCCTACCTATGTAAATCTACTCAGGTGCTGCTGCTAAGGCAACCTTCTCTTCTGGTTACTGATTTTCTCACACATTAGCTTAAAACCCATTCACCATCATGAGTACATGAG----------TGTCTAATATAGGACTGTTTTAT--------------GTCTAGATCATGACATGATCTAGGATTTGTCCTCTTATAAAT---CTACAAGTAA----------GTATATTGTTTCATGC-ATGGTGG----------------TAACAGTTTCTTGGAGAATAAACTTCTACATTTGCTAATTAT------- i mm10.chr5 C 0 C 0 s canFam3.chr3 3729725 1107 - 91889043 tctatattatggatga-gaaactaaagcatagagagaagctaattgacgtgcttggatag-------------------aaagctgagcagtggGACTCATGGGGCAAAAGTAAGTCCCACATGAAACGGGCTTCAGGACATCAGGATTccagctggaccttg--gacacatgggcagtac-cccttcggagctct-ctttgctcacctgctaaccccaggagctgagctagatgacctcagaggacccttccactgctagcaatctgtgaGCCCCTAAATTATAGTTACAGCTATTCTGCTGCATTTATTTCAATCAAGGCAAGCTGACCACACATCAGACAATGTCCGACTAC---AGCAGCCCAGTTCCTAATGGCAGCCATCCATCTTCCCTGCTTTAAATTCTTGGTGTTTTAGTGCATATAT-CCCCTGAAACCCGTCTGCTATGAGAAAATTCTGCAGGCAAGAG-AGG-CTGCTTGTGCAACAGTCTTG-CCAATTTCTCCATGGATCTCCTCTCAAGGT---------TTTCAAGGTCACGGCTAATCACAGACAAGGTTGCAGTGAGTGCTCATAAGTTTCCTCTTCCTGCATAACCAGTGGG-------------------------AGAAAGGAATTACCTGTTGACCAGATGACCATGAAGATTAACATCTGAAGT---AA----GTACCAGAAAACTTGA----TCAAACAGCGCTAATCACATTAATAATGAGCACCGGAAGAAGGAGCCAGTTT--CCTCGCCTA-------------AATTGACTACTGGACCCCCCATGCTCACAACAAA-TTAGATTATTACAGTGCGTAAGG-----------------------CCATGCTAA-----------------CTTCCACCCC------------------------------------------AAAACCTCACCAAATACTTCTCTTCACTAGTTT----CTTGCTACCCTCTGTCCCCCCTCAAGGAATCATTGCAGCTGCAGCTC--CAACCAGCTTTGTGTTATCATTACAGCTCACATCGTATAGTTCCTTAAAGTGCATC-ACCA-CATCCATCCCTGTTGTGTCAAAGCTTTTGACCATACAACCTCCCTAC--------------CCATCGAC------ATGATCCCAGACATGGATTGTTACAAAT---CCCAGTGGAAAAAGAAAGGACTCTGTGATGACCTAC-AGGATAAACTCTCTTTTGCATAATAGGATATTCCAGGAGA---ATGTCCTGCATTTATTGAAAATGACtttt i canFam3.chr3 C 0 I 140 a score=4241256.000000 s hg38.chr4_KI270790v1_alt 29406 1266 + 220246 GAAGA-----------------------------------------------------AAGAAATTTTGTGTGAGCATAACATATACATAAATTTTAAAATTTCAAAAAAAC---------CACAGTTCTCAATCTTTTGAATCTGCCAAAGCCAGCATGACA------CAGTGCCATGCCTAATTTCAGAGAGTACCTCCTCTCTCCCCTTCCGTAGTCAGTTGTATTATCATCCTTTAAAACGCTTTAGAGGGTCACTTACGGTCACTCATGGCATATTCAGATAG-----TTTGTAATCCAATTACATTCTTGAA-----------------------------------------------------GATTTAAA-------GAAC-CAGA----AACAAACAAAAA-----------------CATGCAAACATGA--GCTACAGTTTTT--------------ATTG----TATGTGTCTATATATA---------AGAGAGAAAAATG--------GAGATAGACGTA-GA-----------------------------------TATATGTGAATAAATTGCTGCATATAAAAA------CATTAG---TTAATATAAAAAACAG-AAAATAAATATCTTTTTACTTCTTTATTTTAAATGCTAAAAACTTCCT-----TATAAGGGCATCATTATATTTGGAAAACATATAAACCCATTTAGATTATTCAAAAGGAATACAGTGATACAAA---TAAT-AAAACTGACAAGATATCTAATTGGAATTCTTTTGGTTCTTTCAGTTTACAGTGATAAATTTTACCACACTGAATAACTGTAATTTCTACCTGTGCCAAATCTATAGCCAGTCTCATATCTTCTTGCCACTACAATACTAGAAACTTTCCCTGATGAATTATTAAATGATCTTTGAAGTT-GCTACAGTTCATAGAAATGTGACAGTCCAATGTGTCTTAGTGCTGTGAACTGTTACCAAAAAGACTAAACATCCTTGACAGCCTGATAAAAAATTAATTATTCTCCTTCCAATGGAAAGAATGCAACTCTGCCAAAACCTGTTAAATGTGGAGCTTTTAGAGTTCTCAATTTCTTCTCTCTTGGAGAGG------GCACATTATAA-TTTTTCA----------------------------------------------------------TGAGGATTAAATAGCACATGTGAAATATCTAACCTTGCCTAGTATCCACTGGATCTTTAGACCTTAGTTCCTTTTCCT-ACCTTAGAATTTTTGTTCCCCTAACCGCACTATACTAAATGCCAATGCATATT---AGAATAGAGGTGGCAGT---GCAAAATAGAAGAATAAAAGAAATATTGTATTATTGCGAGAAAGGATACCAGTGAAGAGATGTTTACTTCAGATACAG-TAAAATATTCAAATACTCCAAgcaagtt-tttccccag-tgagcctctgtttctgcctatgtagacatcattcga-cctgtccagttatatcta-------ggttattgtgaagattgaaaaaacaagggagagctttttt-----t s panTro4.chr4 21416966 1270 + 193495092 GAAGA-----------------------------------------------------AAGAAATTTTGTGTGAGCATAACATATACATAAATTTTAAAATTTCAAAAAAAC---------CACAGTTCTCAATCTTTTGAATCTGCCAAAGCCAGCATGATG------CAGTGCCATGCCTAATTTCAGAGAGGACCTCCTCTCTCCCCTTCCGCAGTCAGTTGTATTATCATCCTTTAAAACGCTTTAGAGGGTCACTTACGGTCACTCATGGCATATTCAGGTAG-----TTTGTAATCCAATTACATTCTTGAA-----------------------------------------------------GATTTAAA-------GAAC-CAGA----AACAAACAAAAA-----------------CATGCAAACATGA--GCTACAGTTTTT--------------ATTG----TATGCGTCTATATATA---------AGAGAGAAAAATG--------GAGATAGACGTA-GA-----------------------------------TGTATGTGAATAAATTGCTGCATATAAAAA------CATTAG---TTAATATAAAAAACAG-AAAATAAATATCTTTTTACTTCTTTATTTTAAATGCTAAAAACTTCCT-----TATAAGGGTGTCATTATATTTGGAAAACATATAAACCCATTTAGATTATTCAAAAGGAATACAATGATACAAA---TAAT-AAAGCTGACAAGATATCTCATTGGAATTCTTTTGGTTCTTTCAGTTTACTGTGATAAATTTTACCACACTGAATAATTGTAATTTCTACCTGTGCCAAATCTATAGCCAGTCTCATATCTTCTTGCCACTACAATACTAGAAACTTTCCCTGATGAATTATTAAATGATCTTTGAAGTT-GCTACAGTTCATAGAAATGTGACAGTCCAATGTGTCTTAGTGCTGTGAACTGTTACCAAAAAGACTAAACATCCTTGACAGCCTGATAAAAAATTAATTATTCTCCTTCCAATGGAAAGAATGCAACTCTGCCAAAACCTGTTAAATGTGGAGCTTTTAGAGTTCTCAATTTCTTCTCTCTTGGAGAGG------GCACACTAGAA-TTTTTCA----------------------------------------------------------TGAGGATTAAATAGCACATGTGAAATATCTAACCTTGCCTAGTATCCACTGGATCTTTAGACCTTAGTTCCTTTTCCT-ACCTTAGAATTTTTGTTCCCCTAACCCCACTATACTAAATGCCAATGCATATT---AGAATAGAGGTGGCAGT---GCAAAATAGAAGAATAAAAGAAATATTGTATTATTGCGAGAAAGGATACCAGTGAAGAGATGTTTACTTCAGATACAG-TAAAATACTCAAATACTCCAAGCAAGTT-TTTCCCCAG-TGAGCCTCTGTTTCTGCCTATGTAGACATCATTCGA-CCTGTCCAGTTATATCTA-------TGTTATTGTGAAGATTGAAAAAACAAGGGAGAGCTTTTTT-ATTaa i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21593430 1268 + 198332218 GAAGA-----------------------------------------------------AAGAAATTTTGTGGGAGTATAACATATACATAAATTTTAAAATTTCAAAAAACC---------CACAGTTCTCAATCTTTTGAATCTGCCAAAGCCAGCATGACA------TCGTGCCATGCCTAATTTCAGAGAGTACCTTCTCTCTCCCCTTCCGTACTCAGTTGTATTATCATACTTTAAAATGCTTTAGA-GGTCACTTATGGTCACTCACGGCATATTCAGATAG-----TTCGTAATCCAATTACATTCTCGAA-----------------------------------------------------GATTTAAA-------GAAC-CAGA----AACAAACAAAAAT----------------CATGCAAACATGA--GCTACAGTTTTT--------------ATTG----TATGTGTCTATATATA-----------AGAGAAAAATG--------GAGATAGATGTA-GA-----------------------------------TATATGTGAATAAATTGCTGCATGTAAAAA------CATTAG---TTAATACACAAAACAA-AAAATAAATACCTTTTTACTTCTTTATTTTAAATGCTAAAAACTTTCT-----TATAAGGGTGTGATTATATTTGGAAAACATACAAACCCATTTAGATTATTCAAAAGGAATACAATGATACAAA---TAAT-AAAGCTGACAAGATATCTAATTGGAATTCTTTTGGTTCTTTCAGTTTACAATGATAAATTTTACCACACTGAATAATTGTAATTTCTACCTGTGCCAAATCTATAGCCAGTCTCATATCTTCTTGCCACTACAATACTAGAAACTTTCCCTGACGAATTATTAAATGATCTTTGAAGTT-GCTACAGTTCATAGAAATGTGACAGTCCAATGTGTCTTAGTGCTGTGAACCGTTACCAAAAAGACTAAATATCCTTGACAGCCTGATAAAAAATTAATTATTCTCCTTCCAATGGAACGAATGCAACTCTGCCAAAACCTGTTAAATGTGGAGCTTTTAGAGTTCTCAATTTCTTCTCTCTTGGAGAGG------GCACACTAGAA-TTTTTCA----------------------------------------------------------TGAGGATTAAATAGCATATGTGAAATATCTAACCTTGTCTAGTATCCACTGGATCTTTAGACCTTAGTTCCTTTTCCT-ATCTTAGAATTTTTGTCCCCCTAACCCCACTATACTAAATGCCAATGCATATT---AGAACAGAGATGGCAGC---ACAAAATAGAAGAATAGAAGAAATATTGGATTATTGTGAGAAAGGATACCAGTGAAGAGATATTTACTTCAGATACAG-TAAAATACTCAAATACTCCAAGCAAGTT-TTTCCTCAG-TGAGCCTCTGTTTCTGCCTATGTAGACATCATTCAA-CCCCTCCAGTTATATCTA-------GGTTATTGTGAAGATTGAAAAAACAGGGGAGAGCTTTTTT-TTTAA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20205372 1270 - 85365473 CAAGA-----------------------------------------------------AAGAAATTTTGTGTGAGCATAACATATACATAAACTTTAAAATTTGAAAAAAAC---------CACAGTTCTCAATCTTCTGAATCTGCCAAAGCCAGCATGACACAGTGCCAGTGCCATGCCTAATTTCAGAGAGTACCTCCTCTCTCCCCTTCCGTATTCAGTTGTATTATCATACTTTAAAATGCTTTAGAGGGTCACTTATGGTCACTCACGGAATATTCAGATAG-----TTTGTTATCCAATTACATTCTTGAA-----------------------------------------------------GATTTAAA-------GAAC-CAGA----AACAAACAAAAAT----------------CATGCAAACATGA--GCTACAGTTTTT--------------ATTG----TATGTGTCTGTATATA---------AGAGAGAAAAATG--------GAGATAGACGTA-GA-----------------------------------TATATGTGAATAAATTGCTGCATGTAAAAA------CATTAG---TTAATATACAAAAC---AAAATAAATACCTTTTTACTTCTTTATTTTAAATGCTAAAAACTTTCT-----TATAAGGGCGTGATTATTTTTGGAAAATATATAAACACATTTAGATTATTCAAAAGGAATACAATGATACAAA---TAAT-AAAGCTGACAAGATATCTAATTGGAATTCTTTTGGTTCTTTCAGTTTACAATGATAAATTTAACCACACTGAATAATTTTAATTTCTACCTGTGCCAAATCTATAGCCAGTCTCATATCATCTTGCCACTACAATACTAGAAA-TTTCCCTGACGAATTATTAAATGATCTTTGAAGTT-GCTACAGTTCATAGAAATGTGACAGTCCAATGTGTCTTAGTGCTGTGAACTGTTACCAAAAAGACTAAACATCCTTGACAGCCTGATAAAAAATTAATTATTCTCCTTCCAATGGAAAGAATGCAACTCTGCCAAAACCTATTAAATGTGGAGCTTTTAGGGTTCTCAATTTCTTCTCTCTTGGAGAGG------ACACACTAGAA-TTTTTCA----------------------------------------------------------TGAGGATTAAATAGCACATGTGAAATATCTAATCTTGCCTAGTATCCACTGGATCTTTAGACCTTAGTTCCTTTTCCT-ACCTTAGAATTTTTGTTCCCCTAACCCCACTATACTAAATGCCAATGCATATT---AGAACAGAGGCGGCAGT---ACAAAATAGAAGAATAAAAGAAATATTGTATTATTGTGAGAAAGGATACCAGTGGAGAGATATTTACTTCAGATACAG-TAAAATACTCAAATACTCCAAGCAAGTT-TTTCCTCAG-TGAGCCTCTGTTTCTGCCTATGTAGACATCATTCAA-CCTGTCCAGTGATATCTA-------CGTTATTGTGAAGATTGAAAAAACAGGGGAGAGCTTTTTT-----T i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16670568 1270 + 184069350 GAAGG-----------------------------------------------------AAGAAATTTTGTGTGAGCATACCATATACataaattttaaaatttcaaaaaaaaaaaaaaaCCCACAGTTCTCAGTCTTTTGAATCTGCCAAAGCCAGCATGACA------CAGTGCCATGCCTAATTTCAGAGAGTACCTCCTCTCTCCCCTTTCATACTCAGATGTATTATCATACTTTAAAATGCTTTAGCGGGTCACTTACGGTCACTCACAGCATATTCAGATAG-----TTTGTAATCCAATTACATTCTTGAA-----------------------------------------------------GATTTAAA-------GAAG-CAG--------AAACAAAAAT----------------CATGCAAACATGA--GCCACAGTTTTT--------------ATTG----TATGTGTATATATATA---------AGAGAGAAAGATG--------GAGACAGACCTA-GA-----------------------------------TATATGTGAATAAATTGCTGCATGTAAAAA------CATTAG---TTAATATACAAAACAG-AAAATTAATACATTTTTACTTTTTTATTTTAAATGCTAAAAACTTTCT-----TATAAGGGCATGATTATATTTGGAAAACATATAAACCCATTTAGATTATTCAAGATGAATACAATGATACAAA---TAAT-AAAGCTGACAAGATATCTAATTGGAATTC-CTTAGTTCTTTCAGTTTACAATGATAAATTTTACCACACTGAATAATTGTAATTTCTACCTGTGCCGAATCTATAGCCAGTCTCATATCTTCTTGCCACTACAATACTAGAAACTTTCCCTGATGAATTATTAAATGATATTTGAAGTT-GCTACAGTTCATAGAAATGTGACACTTCAATGTGAATTAGTGCTGTGAACTATTACC-AAAAGACTAAACATCCTTGACAGCCTGATAAAAAATTAATTATTCTCCTTCCAATGGAAAGAATGCAACTCTGCCAAAACCTGTTAAACGTGGAGATTTTAGAGTTCTCAATTTATTCT-------------------------------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT--------------------------TCTAAGCTTGCCTAGTATCCACTAGATCTTTAGACCTTAGTTCCTTTTCCT-ACCTTAGAAATTTTGTTCCCCTAACCCCACTATACTAAATGCCAATGCATATT---AGAACAGAGGTGGCAGT---GCAAAATAGAAGAATAAAATAAATATTGGATTATTATGAGAAAGGATACCAGCGAAAAGATGTTTACTTCAGATACAG-TAAAATACTCAAATACTCCAAGCAAGTT-TTTCCTCAG-TGAGCCTCTGTTTCTGCCTATGTAGACGTCATTCGA-CCTGTCCAGTTATATCTA-------GGTTATTGTGAAGATTGAAAAGACAGGGGAGAGCTTTT-------T i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20713031 1267 + 189454096 GAAGG-----------------------------------------------------AAGAAATTTTGTGTGAGCATACCATATACATAAATTTTAAAATTTCAAAAAAAAAAAAAAA--CACAGTTCTCAGTCTTTTGAATCTGCCAAAGCCAGCATGACA------CAGTGCCATGCCTAATTTCAGAGAGTACCTCCTCTCTCCCCTTTCATACTCAGATGTATTATCATACTTTAAAATGCTTTAGCGGGTCACTTATGGTCACTCACGGCATATTCAGATAG-----TTTGTAATCCAATTACATTCTTGAA-----------------------------------------------------GATTTAAA-------GAAG-CAG--------AAACAAAAAT----------------CATGCAAACATGA--GCCACAGTTTTT--------------ATTG----TATGTGTATATATATA---------AGAGAGAAAGATG--------GAGACAGACCTA-GA-----------------------------------TATATGTGAATAAATTGCTGCATGTAAAAA------CATTAG---TTAATATACAAAACAG-AAAATTAATACATTTTTACTTTTTTATTTTAAATGCTAAAAACTTTCT-----TATAAGGGCATGATTATATTTGGAAAACATATAAACCCATTTAGATTATTCAAGATGAATACAATGATACAAA---TAAT-AAAGCTGACAAGATATCTAATTGGAATTC-TTTAGTTCTTTCAGTTTACAATGATAAATTTTACCACACTGAATAATTGTAATTTCTACCTGTGCCGAATCTATAGCCAGTCTCATATCTTCTTGCCACTACAATACTAGAAACTTTCCCTGATGAATTATTAAATGATCTTTGAAGTT-GCTACAGTTCATAGAAATGTGACACTTCAATGTGAATTAGTGCTGTGAACTATTACC-AAAAGACTAAACATCCTTGACAGCCTGATAAAAAATTAATTATTCTCCTTCCAATGGAAAGAACGCAACTCTGCCAAAACCTGTTAAACGTGGAGATTTTAGAGTTCTCAATTTATTCTCTCTTGGAGAGA------GCACACTAGAA-TTTTTCA----------------------------------------------------------TGAGGATTAAATAGCACATGTGAAATATCTAAGCTTGCCTAGTATCCACTAGATCTTTAGACCTTAGTTCCTTTTCCT-ACCTTAGAAATTTTGTTCTCCTAACCCCACTATACTAAATGCCAATGCATATT---AGAACAGAGGTGGCAGT---GCAAAATAGAAGAATAAAAGAAATACTGGATTATTATGAGAAAGGATACCAGCGAAAAGATGTTTACTTCAGATACAG-TAAAATACTCAAATACTCCAAGCAAGTT-TTTCCTCAG-TGAGCCTCTGTTTCTGCCTATGTAGACATCATTCGA-CCTGTCCAGTTATATCTA-------GGTTATTGTGAAGATTGAAAAGACAGGGGAGAGCTTTT------AA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16307137 1262 + 178775436 GAAGG-----------------------------------------------------AAGAAATTTTGTGTGAGCATACcatatacataaattttaaaatttcaaaaaagc---------cACAGTTCTCAGTCTTTTGAATCTGCCAAAGCCAGCATGACA------CAGTGCCATGCCTAATTTCAGAGAGTaccttctctctcccctttcaTACTCAGATgtattatcatactttaaaatGCTTTGGAGGGTCACTTATCGTCACTCACGGCATATTCAGATAG-----TTTGTAATCCAATTACATTCTTGAA-----------------------------------------------------GATTTAAA-------GAAC-CAG--------AAACAAAAAT----------------CATGCAAACATGA--GCCACAGTtttt--------------attg----tatgtgtatatatata---------agagagaaagatg--------gagacaGACGTA-GA-----------------------------------TATATGTGAATAAATTGCTGCATGTAAAAA------CATTAG---TTAatatacaaaacag-aaaattaatacatttttacttttttgttttaaatgctaaAAACTTTCT-----TATAAGGGCATGattatatttggaaaacatataaATCCATTTAGATTATTCAAGAGGAATACAATGATACAAA---TAAT-AAAGCTGACAAGATATCTAATTGGAATTC-TTTGGTTCTTTCAGTTTACAATGATAAATTTTACCACATTGAATAATTGTAATTTCTACCTGTGCTGAATCTATAGCCAGTCTCATATCTTCTTGCCACTACAATACTAGAAACTTTCCCTGATGAATTATTAAGTGATCTTTGAAGTT-GCTACAGTTCATAGAAATGTGACAGTCCAATGTGAATTAGTGCTGTGAACTGTTATC-AAAAGACTAAACATCCTTGACAGCctgataaaaaattaattattctcCTTCCAATGGAAAGAATGCAACTCTGCCAAAACCTGTTAAACGTGGAGATTTTAGAGTTCTCAATTTATTCTCTCTTGGAGAGG------GCACACTAGAA-Tttttca----------------------------------------------------------tgaggattaaatagCACATATGAAATATCTAAGCTTGCCTAGTATCCACTAGATCTTTAGACCTTAGTTCCTTTTCCT-GCCATAGAAATTTTGTTCCCCTAACCCCACTATACTAAATGCCAATGCATATT---AGAACAGAGGTGGCAGT---gcaaaatagaagaataaaagaaatattggaTTATTATGAGAAAGGATACCAGGGAAAAGATATTTACTTCAGATACAG-TAAAATACTCAAATACTCCAAGCAAGTT-TTTCCTCAG-TGAGTCTCTGTTTCTGCCTATGTAGACATCATTCGA-CCTGTCCAGTTATATCTA-------GGTTATTGTGAAGATTGAAAAGACGGGGgagagctttttt----tt i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19795013 1263 - 48547382 GAAGG-----------------------------------------------------AAGAAATTTTGTGTGAGCATACCATATACATAAATTTTAAAATTTCAAAAAAAC---------CACAGTTCTCAGTCTTTTGAATCTGCCAAAGCCAGCATGACA------CAGTGCCATGCCTAATTTCAGAGAGTACCTTCTCTCTCCCCTTTCATACTCAGATGTATTATCACACTTTAAAATGCTTTAGAGGGTCACTTATGGTCACTCACGGCATATTCAGATAG-----TTTGTAATCCAATTACATTCTTGAA-----------------------------------------------------GATTTAAA-------GAAC-CAG--------AAACAAAAAT----------------CATGTAAACATGA--GCCACAGTTTTT--------------ATTGTGtatatatatatatatata---------AGAGAGAAAGACG--------GAGATAGACGTA-GA-----------------------------------TATATGTGAATAAATTGCTGCATGTAAAAA------CATTAG---TTAATATACAAAACAG-AAAATTAATACATTTTTACTTTTTTATTTTAAATGCTAAAAACTTTCT-----TATAAGGGCATGATTATATTTGGAAAACATATAAACCCATTTAGATTATTCAAGATGAATACAATGATACAAA---TAAT-AAAGCTGACAAGATATCTAATTGGAATTC-TTTGGTTCTTTCAGTTTACAATGATAAATTTTACCACACAGAATAATTGTAATTTCTACCTGTGCCGAATCTATAGCCAGTCTCATATCTTCTTGCCACTACAATACTAGAAACTTTCCCTGATGAATTATTAAATGATCTTTGAAGTT-GCTACAGTTCATAGAAATGTGACACTCCAATGTGAATTAGTGCTGTGAACTGTTACC-AAAAGACTAAACATCCTTGACAGCCTGATAAAAAATTAATTATTCTCCTTCCAATGGAAAGAATGCAACTCTGCCAAAACCTGTTAAATGTGGAGATTTTAGAGTTCTCAATTTATTCTCTCTTGGAGAGG------GCACACTAGAA-TTTTTCA----------------------------------------------------------TGAGGATTAAATAGCACATGTGAAATATCTAAGCTTGCCTAGTATCCACTAGATCTTTAGACCTTAGTTCCTTTTCCT-ACCTTAGAAATTTTGTTCCCCTAACCCCACTATACTAAATGCCAATGCATATT---AGAACAGAGGTGGCAGT---GTAAAATAGAAGAATAAAAGAAATATTGGATTATTATGAGAAAGGATACCAGGGAAGAGATGTTTACTTCAGATACAG-TAAAATACTCAAATACTCCAAGCAAGTT-TTTCCTCAG-TGAGCCTCTGTTTCTGCCTATGTAGACATCATTCAA-CCTGTCCAGTTATATCTA-------GGTTATTGTGAAGAATGAAAAGACAGGGGAGAGCTTTT-------C i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21148994 1277 - 190850796 GAAGG-----------------------------------------------------AAGAAATTTTACATGAATATACCATATACATAAATTTTTAAATTTCAAAAAA-C---------CACGATTCTCAATCTTTTGAATCTGCCAAAGCCAGCACAACA------TAGTGCCATGCCTAATTTCAGAGAGTACCTCCTGTCTCCCCTTCCATACTCAGATGTATTATCACACTTTAAAATGCATTAGAGGGTCACTTACAGTCACTCACAGCATATTCAAAGAG-----TTTGTAATCCAATTACATTCTTGAA-----------------------------------------------------GATTAAAA-------AAAGACAAA----AACGAACAAAAAT----------------AATGCAAACATGA--GCCACAGTTTTT--------------ATTG----TATGTGTGTGTGTGCGTGTATACATATATAGAAAGATG--------GAGATAGATGTA-GA-----------------------------------TATATGTGAATAAATTGCTTCATGTTAAAA------CAATAGTAATTAATATACAAAACAT-AAAATAAATACATTTTTACTTCTTCATTTTAAATGCTAAAAGCTTTCT-----TATAAGGGCATAATTATATTTGGAAAATATATAAACATATTTAGATTATTCAAGAGGAATACAATGATACCCT---TAAT-AAAGCTGACAAGATATCTAATTGGAACTC-TTTGGTTCTTTCAGTTTACAATGATAAATTTTACCATACTGGATAAC-GTAATTTCTACCTGTACCAAATCTATAGCCAGTCTCATATCTTCTTGCCATTATAATACTAGGAACTTTCCTTGCTTAATTATTAAACGATCTTTGAAGTT-GCTATAGTTCATAGAAATGTGACCGTCCAATGCATCTTAGTGCTGTGAACTGTTAGC-GAAAGACTAAACATCTTTGACAGCCTGATAAAAAATTAATTATTCTCCTTTCAATGGAAAGAATGCAACTCTGTCCAAACCTGGTAAATGTGGAGCTTTTAGAGTTCTCAATTTCTTCTCTCTTGGAGAAG------GCACACTAGAA-TTTTTCA----------------------------------------------------------TGAGGATTAAATACCATGTGCAAAATATCTAACCTTGTGTAGCACCCACTGGATCTTTAGAA--TAGTTCCTTTTCCT-ACCTTAGAATTTTTGTTCCCCCAACCCCACCATACTAAATGCCAACGCATCTT---AGAACAGAGGTAGCAGT---GCAAAATGGAAGAATGAAAGAAATG-TGGACTATTGTGAGAAAGGATACCAGTGAAGAGATATTtacttcagatacag-tgaaatactgaaatactccaagcaag-t-tttcctcag-tgagcccctgtttctgcctttgtagatgtcattcAT-ACT-TCCAGTTATATCTATTCTTTGGGTTATTGTGAAGATTGCAAAGACAGAGGAGAGCTTTTTT------ i calJac3.chr3 C 0 C 0 s mm10.chr5 49135060 1244 + 151834684 -------------------------------------------------------------------------------------------------------------------------AACTTTTCCCAACC---AGAAACTGC---------------A------CAGTGCTGGGTCTAGTCTCAAA----CTCTCCTGTTCTTGCTTCCACACCCAAATGCTTCACCAAGTGTGAGTATGCCACAAAGGATCACTTGTGCTCACATCCTATATAATCAGATGGGTGTTTTGGTATTCTAAATAAATCTTTGAAgtgagatggctccggtggtgaatgtgctaggcatggagtctgagttatcacctgattttaatccccccaaaa-cacatgatagtagagaagaattggctccctgtcttcccatatccacatgcatgGTATAGTGGCTCCACCAACAAACAAAATA----AAGGTGtatttttaaa---------atataaaaaaata--------atGAGGGAAAGA-AACAACCATCATTCAAAGAGGTGCCATGGTTTCCGTTTGTACATGCACACATTGCTTTCCATTCAAATGTGGTCATTAC---TTGACACACAAATCTA-AAGTTT----CATTTTCACTAC---ATTTTGTACTCCCAGCCTTTGTTTTGCATACACAGGCATGATTAGATGCGCAAAACATTAAAATACACTTAGATTATCTAAAAGGAGTACAATACTGTGAGGACTAATGAAAGCTGA--------------GGAAAAC--------------------------------------------TAACTGTAATTTCTGCCTATGCCCGATGCACTGTCAGGACCAC-TCTTCTTGTCATTGTGTTCAGAGGAACTTTCCATACTGAATTATTAAATGGTCTCTGAAGCTGGCTCCAGTTCATAGGACTTTGACAGTCTGATGGGTCTCAGTGCTATGAACCGTTACT-CAGAGACTAAACATCCTTGACAGCCTGATAAAAAATTAATTACTCTCCTTCCAATGGCAAGGGTGAACCCCTGCCCGAGTCTGTTAAACGCAGAGCTTTATGAGTTCTCAATTTCATCTCTCTTACAAAGG------GCACTGTAGAAGTTTTTCA----------------------------------------------------------TGAGGATTAAATAGCATATACAAGATCTCGAAATGTTCCTGGCAAACA------CTTTATACTTCAGTTCCTGTCACT-GGCTTA-ATATTTTGTTTCCTTTCCCTC------CTAAATATCAGTTCATCTTTAAACAACAGAAGTTATCAC---ACAAAATGGAGAGATGTTGGTATGCTAGGATGCTGGGCAATGAGAACACCATTTATGCCGTATTT-----GGATCCGA-TATGACAGTTAAGT------------TC-CTTCCCCAGCTAAAGTTTTGTTTTCTCAGACATTAAAGTGAATTAA-TCT---TAGGGAGATCT--------GCCTACCATCAAAAT---AAAAGGAAGAAAATGTGTTTTTAATCAT i mm10.chr5 C 0 C 0 s canFam3.chr3 3730972 1338 - 91889043 gaaggcagacgcttaacccactgagccacccaggtgcctcTGACTCTGACTTTTGACAGAGATATTTTGCAAAAGTATGCTCTAAATATAAATTTTTAAACTTTGCAAAAAAGAAAA----TAGAGTTCTCAATATTT--------CTGAGACAGAAACTCCA------CACTGCTATATCCCGTCCCAAAGACTCCCTCCTCTGTTC-CTTCCATACCCAGGTGCATTACCACACATTAAAATGCTTTAGAGGGTCACTTATGGTCACTTACTGCATCTTCAGATAG----TTTTATAACCCAAATACACTCTTGAA-----------------------------------------------------GATTTAAA-------AAAC-TGGAAACAAAGAAACAAAAAC----------------CTGGAAAATGTTA--ACCATGGTTTTT--------------ACTa----cacacacacacacaca---------cacacacacGATGTATCATATGCAAGCTATGTATGA-----------------------------------TATCTGTGAATA-ATTGCTGCATGTAAAAACGTATCCTTTAA---TCGATATGCAAAATGGAAAAATACATGCTTTTACACTTC-----TTCAAACTCTGAAACACTTTT-----TATAAGGGCATGATTATATTTGGAAAATGTATCAACACACTTAGGTTATTCAAGAGGAATGCAATGAGGCAGA---TAAT-AAAGTTGAC-AGATGCCTAACTGAAACTC-TTTGGTTCCTCCAGCTTTTAACAATAAATTTTCTCTTGGTGAATAACTGTGATTTCTACCTGTATCCAATCCATAGCCAGTCTCACATCTCCTTGTCATTAATATACTAGGAACTGTCCCTGCTGAATTATTCAATGATCTTTGGAGTTGGCGACAGTTTATAGAAACGTGACAGTCCTGTGCGTCTTAGTGCTGTGAACTGTTACC-GAAAGACTAAACACCCTTGACAGGCTGATAAAAAATTAATTATTATTCTTTCAATGGAAAGGATACAACTCTGCCAAAAGCTGTTAAGTGTGGAGATTTTAGAGTTCTCCATT---TCTCTCTTGCAGAGGACACACACACACTAGGA-TTTTTCA----------------------------------------------------------TGGGGATTAAATAGCATGTACAAAGTATCAGGCCTTGCCT-GCACACACCGGGTCTTTATACCCTCATTCCTCTCACTGGCCCTAGAATTTTTGTCTTCTTTCCTCC------CTGCATGTGAATTCATCTTTAAGGAACAGAGGCAACAACTGAGCAAATTGGAAGACTGCAAGAAGTGCTAGA---TTGTgagaaaagatagcagttaggagatcccgattttagatacagttaaaatactcagataccctaggcaagttctttcctcagccaagcctc--cctcctcatttgtaaaagtggcttaagcccatccagctctatctgtccgctgggtcactgtgcagattgaaAAGGACAGGGACAACTTCTTT-----T i canFam3.chr3 I 140 I 17 a score=5830.000000 s hg38.chr4_KI270790v1_alt 30672 41 + 220246 aaaaaaaaaaaaaacaaaaaacaacaacaa-aaaaaaaCCTT s panTro4.chr4 21418236 42 + 193495092 aaaaaaaaaaaaaaaaaaaaaaaacaacaacaaaaaaaCCTT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21594698 23 + 198332218 AAAAAAA------------------AACAA-AACAAAACCTA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20206642 30 - 85365473 aaaaaaaaaaaaaa-----------atgaa-aacaaaaCCTA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16671838 18 + 184069350 TTAAAAA------------------------AAAAAAACTTA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20714298 18 + 189454096 AAAAAAA------------------------AAAAAAACGTA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16308399 18 + 178775436 aaaaaaa------------------------aaaaaaactta i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19796276 15 - 48547382 TTAAAAA------------------------AAAAA---CTA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21150271 11 - 190850796 -------------------------------AAAAAAATCTA i calJac3.chr3 C 0 C 0 s mm10.chr5 49136304 23 + 151834684 TTAAACT------------------AACAG-ATATGAAATTA i mm10.chr5 C 0 C 0 e canFam3.chr3 3732310 17 - 91889043 I a score=841457.000000 s hg38.chr4_KI270790v1_alt 30713 273 + 220246 TGTGTTACAATATATAGATCTTAT--TTTCAACAGCGATTAGGTAATGGAATTAGTGCAGTA-AAGTTTTATTAA-----------------------------------------------------------------------------------------TGAATGCTGTAATTAGAAAATGTTAATTCAATATTTGCTTCCCCAGGTTACATTCATTTG--G---AAAAAAATGCATTAATCTTACCATTTAGTGATAACTC--TTTCAGTTCAACCTACAGACACAAGATCTTGAAATGAAACTGTTGATTAATTTATTTACTCAGTAAAGATGCTACT--GGATACAATAGAAATACAAGTCATAAA s panTro4.chr4 21418278 273 + 193495092 TGTGTTACAATATATAGATCTTAT--TTTCAACAGTGATTAGGTAATGGAATTAGTGTAGTA-AAGTTTTATTAA-----------------------------------------------------------------------------------------TGAATGCTGTAATTAGAAAATGTTAATTCAATATTTGCTTCCCCAGGTTACATTCATTTG--G---AAAAAAATGCATTAATCTTACCATTTAGTGATAACTC--TTTCAGTTCGACCTACAGACACAAGATCTTGAAATGAAACTGTTGATTAATTTATTTACTCAGTAAAGATGCTACT--GGATACAATAGAAATACAAGTCATAAA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21594721 274 + 198332218 TGTGTTACAATATATAGATCTTAT--TTTCAACAGCGATTAGGTAATGGAATTAGTATAGTA-AAGTTTTATTAA-----------------------------------------------------------------------------------------TGAATGCTGTAATTAGAAAAGGTTAATTCAATATTTGCTCCCCCAGGTTACATTCATTTG--G--AAAAAAAATGCACTAATCTTGCCATTTAGTGATAACTC--CTTCAGTTCGACCTACAGACACAAGATCTTGAAATAAAACTGTTGATTAATTTATTTACTCAGTAAAGATGCTACT--GGATACAATAGAAATACAAGTCATAAA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20206672 275 - 85365473 TGTGTTACAATATATAGATCTTAT--TTTCAACAGCGATTAGGTAATGGAATTAGTGTAGTA-AAGTTTTATTAA-----------------------------------------------------------------------------------------TGAATGCTGTAATTAGAAAAGGTTAATTCAATATTTGCTTCCCCAGGTTACATTCATTTG--AA-AAAAAAAATGCACTAATCTTACCATTTAGTGGTAACTC--CTTCAGTTCGACCTACAGACACAAGATCTTGAAATGAAACTGTTGATTAATTTATTTACTCAGTAAAGATGCTACT--GGATACAATAGAAGTACAAGTCATTAA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16671856 364 + 184069350 TGTGGTACAATATATAGATCTTAT--TTTCAACAGCAATTAGGTAATGGAATTAGTGTAGTAGAAATTTTATTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGCTGTAATTAGAAAAGGTTAATTCAGTATTTGCTTCCTCAGGTTACATTCATTTG--A--AAAAAAAATGCACTAATCTTACTATTGAGTGATAACTC--CTTCAGTTCGACCTGCAGACACAAGATCTTGAAATGAAACTGTTGATTAATTTATTTACTCAGTAAAGATGCTACT--GGATATAACAGAAATGCCAGTCATAAA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20714316 273 + 189454096 TGTGGTACAATATATAGATCTTAT--TTTCAACAGCAATTAGGTAATGGAATTAGTGTAGTA-AAGTTTTATTAA-----------------------------------------------------------------------------------------TGAATGCTGTAATTAGAAAAGGTTAATTCAGTATTTGCTTCCTCAGGTTACATTCATTTG-----AAAAAAAATGCACTAATCTTACTATTGAGTGATAACTC--CTTCAGTTCGACCTGCAGACACAAGATCTTGAAATGAAACTGTTGATTAATTTATTTACTCAGTAAAGATGCTACT--GGATATAACAGAAATGCCAGTCATAAA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16308417 274 + 178775436 tgtggTACAATATATAGATCTTAT--TTTCAACAGCAATTAGGTAATGGAATTAGTGTAGTA-AAGTTTTATTAA-----------------------------------------------------------------------------------------TGAATGCTGTAATTAGAAAAGGTTAATTCAGTATTTGCTTCCTCAGGTtacattcatttg--a--aaaaaaaatgcactaatCTTACTATTGAGTGATAACTC--CTTCAGTTCGACCTGCAGACACAAGATCTTGAAATGAAACTGttgattaatttatttactcAGTAAAGATGCTACT--GGATATAACAGAAATGCCAGTCATAAA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19796291 276 - 48547382 TGTGGTACAATATATAGATCTTAT--TTTCAACAGCAATCAGGTAATGGAATTAGTGTAATA-AAGTTTTATTAA-----------------------------------------------------------------------------------------TGAATACTGTAATTAGAAAAGTTTAATTCAATATTTGCTTCCTCAGGTTACATTCATTTGAAA--AAAAAAAAAGCACCAATCTTACTATTGAGTGATAACTC--CTTCAGTTCGACCTGCAGACACAAGATCTTGAAATGAAACTGTTGATTAACTTATTTACTCAGTAAAGATGCTACT--GGATATAATAGAAATGCAAGTCATAAA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21150282 269 - 190850796 CGTGTTACAATATATAGATCTTAT--TTTCAACAGGGATTAGGTAATGGAATTAGTGTAGTA-CAGTTCTATTAA-----------------------------------------------------------------------------------------CAGATGCTGTAATTAGAAAAGGTCAATTCAATATTTGCTTCCCCAGGTTATATTCACTAG--A---AAAAAAATCCACTAATTTAACCATTTAGTAATAACTC--CCTCAGTTCGACCCACAGACACACTATCTTGAAATGAAACTGTTGAT----TTATTTATTCAGTAAAGATGCTATT--GGATACAATAGAAATACAAGTCATAAG i calJac3.chr3 C 0 C 0 s mm10.chr5 49136327 225 + 151834684 TGTGTTA--------AGCTTTCAT--TTACAATGTTGATGAGGAA-------------AACC-CAGTTCAATATG-----------------------------------------------------------------------------------------TGATTGCT--------------TAAAATCCACTCTCATTTCTGAAAGCAGCAGATCTCTG--A---AAAGAAGTGAGGTAAGTCAACC------CAAAAACTCAAACCCA---CAACTCACAAACACATGATC-AGGAGTAAAACTGTTTAC----TTACTAATTCAG-AAAAATGCAGGT--GAACTCACTAGAAAACCAAGCAATAAA i mm10.chr5 C 0 I 229 s canFam3.chr3 3732327 261 - 91889043 TATGTTATAAAATTTGAGTCTTCTTATATTTACAGCTAGTAGGTA-TGGAACTGATGTA----AAATGATATTAA-----------------------------------------------------------------------------------------TGAATTGTGTGATTAGGAAAGGTC------GTGACTGGTTCCCCAAATTCCATTTATCTG--GAGAGAAACAAGCCTCTAGCTTCACCATTTAGTGATAACGC--CTTCA-----CACCACACACGTAAGGTCCTGGAGTACAAGTATTGAT----TGATTAATCCAGAAAGGATGTTACTAGAGATGTAACAGAAATACAGGTCAAAGA i canFam3.chr3 I 17 I 1 a score=160267.000000 s hg38.chr4_KI270790v1_alt 30986 49 + 220246 TGTTTTGCAA-ACAATGATAGTAATGAAAGATATTAGTCTTTTTCCTTAG s panTro4.chr4 21418551 49 + 193495092 TGTTTTGCAA-ACAATGATAGTAATGAAAGATATTAGTCTTTTTCCTTAG i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21594995 49 + 198332218 TGTTTTGCAA-ACAATGATAATAATGAAAGATATTAGTCTTTTTCCTTAG i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20206947 49 - 85365473 TGTTTTGCAA-ACAATGATAATAATGAAAGATATTAGTCTTTTTCCTTAG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16672220 49 + 184069350 TGTTTTGCAA-AAAACGATAATAATGAAAGATACTAGTCTTTTTCCTTTG i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20714589 49 + 189454096 TGTTTTGCAA-AAAACGATAATAATGAAAGATACTAGTCTTTTTCCTTTG i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16308691 49 + 178775436 TGTTTTGCAA-AAAACGATAATAATGAAAGATACTAgtctttttcctttg i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19796567 49 - 48547382 TGTTTTGCAA-ACAATGATAATAATGACAGATATTAGTCTTTTTCCTTTG i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21150551 49 - 190850796 CTATTTGCAA-AACATGATAATAATGAAAGATATTAGTCTTTTTCCTTTG i calJac3.chr3 C 0 C 0 s canFam3.chr3 3732589 50 - 91889043 TGAATTGCAAGAAAATAATACTGATGACGGACATTCATCTTTTTCCTTTA i canFam3.chr3 I 1 C 0 e mm10.chr5 49136552 229 + 151834684 I a score=1984507.000000 s hg38.chr4_KI270790v1_alt 31035 526 + 220246 AAATTAACTTAGTGGATTGAGACAGTTTACCAGTCTTGCCTTACAAGAACTATTTTAAGCACCT-AAAAAGTAATCATCCCAAGAGAAAATAT---AGAGTGCAAAGAGCACTTTGCTATTTCCTCCTGTTATTACAAAGCATAATAAATCCCTA-CTCTGGACTATTTCTTGCCTGTATCCTGATT----AGATATACCCATAAAGTTTGA-AAATGTCTGCAACTGAGAATACTTTTATTTATAAAGCGGGATAGAGGTTGAGGAGGATGTAGAGAACAGATTGTTATCTGTACTTGTCACAGCAAAGCATA-TTTTTTT-----AATACTTAGTTTTTTAGGCTTCTGTTGGCAGATTGACCTTTCTTGAGAGTAGCTTATC-TTGCTGTAGAGCAATATTCCCAGACCTCCTGGGGTTCACAAAGTTAAGAAGAAGGAGCATCAGGAAATAAAGAAGACAAGAAAGCAAAACAGAAAAGT---AAAATAAAATTTCTGCTGAGTTAAA-GTA---------GGG----TGTAAAAGAGCCATGGAAATTCCAAAGG s panTro4.chr4 21418600 524 + 193495092 AAATTAACTTAGTGGATTGAGACAGTTTACCAGTCTTGCCTTACAAGAACTATTTTAAGCACCT-AAAAAGTAATCATCCCAAGAGAAAGTAC---AGAGTGCAAAGAGCACTTTGCTATTTCCTCCTGTTATTACAAAGCATAATAAATCCCTA-CTCTGGACTATTTCTTGCCTGTATCCTGATT------ATATACCCATAAAGTTTGA-AAATGTCTGCAACTGAGAATACTTTTATTTATAAAGCGGGATAGAGGTTGAGGAGGATGTAGAGAACAGATTGTTATCTGTACTTGTCACAGCAAAGCATA-TTTTTTT-----AATACTTAGTTTTTTAGGCTTCTGTTCGCAGATTGACCTTTCTTGAGAGTAGCTTATC-TTGCTGTAGAGCAATATTCCCAGACCTCCTGGGGTTCACAAAGTTAAGAAGAAGGAGCATCAGGAAATAAAGAAGACAAGAAAGCAAAACAGAAAAGT---AAAATAAAATTTCTGCTGAGTTAAA-GTA---------GGG----TGTAAAAGAGCCATGGAAATTCCAAAGG i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21595044 526 + 198332218 AAATTAACTTAGTGGATTGAGACAGTTTACCAATCTTGCCTTACAAGAACTATTTTAAGCACCT-AAAAAGTAATCATCCCAAGACAAAATAA---AGAGTGCAGAGAGCACTTTGCTATTTCCTCCTGTTATTACAAAGCATAATAAATCCCTA-CTATGGACTATTTCTTGCCTGTATCCCGATT----AGATATACCCATGAAGTTTGA-AAATGTCTGCAACTGAGAATACTTTTATTTATAAAGCGGGATAGAGGTTGAGGAGGATGTAGAGAACAGATTGTTATCTGTACTTGCCACAGCAAAGCATA-TTTTTTT-----AATACTTAGTTTTTTAGGCTTCTTTTGGCAGATTGACCTTTCTTGAGAGTAGCTTATC-TTGCTGTAGAGCAATATTCCCAGACCTCCTGGGGTTCACAAAGTTAAGAAGAAGGAGCGTCAGGAAATAAAGAAGAAAAGAAAGCAAAACAGAAAAGT---AAAATAAAATTTCTGCTGAGTTAAA-GTA---------GGG----TGTAAAAGAGCCATGGAAATTCCAAAGG i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20206996 530 - 85365473 AAATTAACTTAGTGGTTTGAGACAGTTTACCAATCTTGCCTTACAAGAAATATTTTAAGCACCT-AAAAAGTAATGATCCCAAGACAAAATAA---AGAGTGCAGAGAGCACTTTGCTATTTCCTCCTGTTATTACAAAGCATAATAAATCCCTA-ATCTGGACTATTTTTTGCCTGTATCCTGATTAGATAGATATACCCAGGAAGTTTGA-AAATGTCTGCAACTGAGAATACTTTTATTTATAAAGCGGGATGGAGGTTGAGGAGGATGTAGAGAACAGATTGTTATCTGTACTTGCCACAGCAAAGCATA-TTTTTTT-----AATACTTAGTTTTTTAGGCTTCTGTTGGCAGATTGACCTTTCTTGAGAGTAGCTTATC-TTGCTGTAGAGCAATATTCCCAGACCTCCTGGGGTTCACAAAGTTAAGAAGAAGGAGCGTCAGGAAATAACGAAGACAAGAAAGCAAAACAGAAAAGT---AAAATAAAATTTCTGCTGAGTTAAA-GTA---------GGG----TGTAAAAGAGCCATGGAAATTCCAAAGG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16672269 528 + 184069350 AAATTAACTTAGTGGATTGAGACAGTTTACCAATCTTGCCTTACAAGAACTATTTTAAGCACCT-AAAAAGTAATCATCCCAAGACAAAATAA-TCAGAGTGCAGAGAGCACTTTGCTATTTCTTCCTGTTATTACAAAGCATAATAAATCCCTA-CAATGGACTATTTATTGCCTGTATCCTGATT----AGATATACCCATGAAGTTTGA-AAATGTCTGCAACTGAGAATACTTTTATTTATAAAGTGGGATAGAGGTTGAGGAGGATGTAGAGAACAGATTGCTATCTGTACTTGCCACAGCAAAGCATA-TTTTTTT-----AATACTTAGTTTTTTAGGCTTCTGTTGGCAGATTGACCTTTCTTGAGAGTAGCTTATC-TTGCTGTAGAGCAATATTCCCAGACCTCCTGGGGTTCACAAAGCTAAGAAGAAGGAGCATCAGGAAATAAAGAAGACAAGAAAGCAAAACAGAAAAGT---AAAATAAAATTTCCGCTGAGTTAAA-GTA---------GGG----TGTAAAAGAGCCATGGAAATTCCAAAGG i rheMac3.chr5 C 0 I 1 s macFas5.chr5 20714638 528 + 189454096 AAATTAACTTAGTGGATTGAGACAGTTTACCAATCTTGCCTTACAAGAACTATTTTAAGCACCT-AAAAAGTAATCATCCCAAGACAAAATAA-TCAGAGTGCAGAGAGCACTTTGCTATTTCTTCCTGTTATTACAAAGCATAACAAATCCCTA-CGACGGACTATTTATTGCCTGTATCCTGATT----AGATATACCCATGAAGTTTGA-AAATGTCTGCAACTGAGAATACTTTTATTTATAAAGTGGGATAGAGGTTGAGGAGGATGTAGAGAACAGATTGCTATCTGTACTTGCCACAGCAAAGCATA-TTTTTTT-----AATACTTAGTTTTTTAGGCTTCTGTTGGCAGATTGACCTTTCTTGAGAGTAGCTTATC-TTGCTGTAGAGCAATATTCCCAGACCTCCTGGGGTTCACAAAGCTAAGAAGAAGGAGCATCAGGAAATAAAGAAGACAAGAAAGCAAAACAGAAAAGT---AAAATAAAATTTCCGCTGAGTTAAA-GTA---------GGG----TGTAAAAGAGCCATGGAAATTCCAAAGG i macFas5.chr5 C 0 I 1 s papAnu2.chr5 16308740 528 + 178775436 aaattaacTTAGTGGATTGAGACAGTTTACCAATCTTGCCTTACAAGAACTATTTTAAGCACCT-AAAAAGTAATCATCCCAAGACAAAATAA-TCAGAGTGCAGACAGCACTTTGCTATTTCTTCCTGTTATTACAAAGCATAATAAATCCCTA-CAATGGACTATTTATTGCCTGTATCCTGATT----AGATATACCCATGAAGTTTGA-AAATGTCTGCAACTGagaatacttttatttataaagtgGGATAGAGGTTGAGGAGGATGTAGAGAACAGATTGCTATCTGTACTTGCCACAGCAAAgcata-ttttttt-----aatacttagtTTTTTAGGCTTCTGTTGGCAGATTGACCTTTCTTGAGAGTAGCTTATC-TTGCTGTAGAGCAATATTCCCAGACCTCCTGGGGTTCACAAAGCTAACAAGAAGGAGCATCAGgaaataaagaagacaagaaagcaaaacagaaaagt---aaaataaaatttccgCTGAGTTAAA-GTA---------GGG----TGTAAAAGAGCCATGGAAATTCCAAAGG i papAnu2.chr5 C 0 I 1 s chlSab2.chr27 19796616 528 - 48547382 AAATTAACTTAGTGGATTGAGACAGTTTACCAATCTTGCCTTACAAGAACTATTTTAAGCACCT-AAAAAGTAATCATCCCAAGACAAAATAA-TCAGAGTGCAGAGAGCACTTTGCTATTTCTTCCTGTTATTACAAAGCATAATAAATCCCTA-CAATGGACTATTTATTGCCTGTATCCTGATT----AGATATATCCATGAAGTTTGA-AAATGTCTGCAACTGAGAATACTTTTATTTATAAAGT-GGATAGAGGTTGAGGAGGATGTAGAGAACAGATTGCTATCTGTACTTGCTACAGCAAAGCATATTTTTTTT-----AATACTTAGTTTTTTAGGCTTCTGTTGGCAGATTGACCTTTCTTGAGAGTAGCTTATC-TTGCTGTAGAGCAATATTCCCAGACCTCCTGGGGTTCACAAAGCTAAGAAGAAGGAGCATCAGGAAATAAAGAAGACAAGAAAGCAAAACAGAAAAGT---AAAATAAAATGTCCGCTGAGTTAAA-GTA---------GGG----TGTAAAAGAGCCATGGAAATTCCAAAGG i chlSab2.chr27 C 0 I 1177 s calJac3.chr3 21150600 529 - 190850796 AAAGTAACTTAGTGGATTGAGAGAGTTTACCAATTTTGCCTTACAAGAACTGTTTTAAACATCT-AAAAATTAATCATCCCAAGACAGAATAAAAAAGAATGCAGACAGCACTTTGCTATTTCCTCCTGTTATTACAAATCATAATAAATCCCTA-TTATGGACTATTTCTTGTCTGTATCCTGATT----AGATATATCCATGAAGTTTGA-AAATGTCTGGAACTGAGAATACTTTTATTTATAAAGTGGGATAGAGGTTGAGGAGGATGTAGAGAACAGATTGTTATCTGTACTTGCCACAGCAAAGCATA-TTTTTTT-----AATACTTAGTTTTTTAGGCTTCTGTTGGCAGACTGACCTTTCTTGAGAGTAGCTTATC-TTGCTGTAGAGCAATATTGCCAGACCTCCTGGGGTTCACAAAGCTAAGAGGAAGGAGCATCAGGAAATAAAGAAGATGAGGGAGCAAAACAGAAAAGT---AAAATAAAATTTCTGCTGAGTTAAA-GTA---------GGG----TGTAAAAGAGCCATGGAAATTCCAAAGG i calJac3.chr3 C 0 C 0 s mm10.chr5 49136781 532 + 151834684 AAACTAACTTTGTAGATTGAGGTATTTTATCTATCATGTACAAGGAAAACAGTTTTCAAAATAT-AAAACTTAATTTTCTGGAGGCAGACTAA-AGAGAATTCTGAGAGTACATTGCTTTTCCCTCCTTTCATTCAAAAGCACAATAAATCCCCAGCTATGTGGTGTT--TTACCCACATCATCATC----AAACATAATTATGTCTTTAAACAAATCTCCAGTATTAAGAATACCCTTACTTTTAAAGAAAAATTCTGG--AGGGATGTTATGGAAGTCA-ATTGTTATCCATACTTGTCACAG---AATATG-ACTTTTTAAAAAAATATTTGCTTTTTCTATTTTGTCTTGGCAGGTTGACCTT--TTGTTAGTCATTTATC-TTACAGTATTGCACTATTCATAGGCAGCCTAGGCATCTCAAAGCTGTGA-----GAGAATCAGAAACGAAGAGAGAAAGAGGGACAAGGAATAAAAGCCTACAGGTATAATTCTTTTTTCCCCAAA-GTAACATCAAGGAGG----AATCAAAGGACAACAGAAATGCCAAAGG i mm10.chr5 I 229 C 0 s canFam3.chr3 3732639 502 - 91889043 AAATCAACCCAGTGGGTTGAGGGAGTTTCCCGATTTTGCATTAGAGGAAGAATGTTCAGCATCTAAAAAAGGAATAATCCCAAGACACAATAA-ACAGTGTATAGAGAACACTTGGCTCTTTTCTCCTGTTATTACAAAG------AAATCCCTACCTATGGAATATTTCTTGTGCATACCCTAACA----GGATATAACCACGGAGTCTGA-AAGTCTCTAGAACTGAAAATACTTTTATTTTCAAAGA-TGACAGAGGTTGGGGAGGA-----AGGACAGAGTGTTATCTGTACTCGCCACGGCAAAGCAGA-CTTTTTT-----AATGCCTAG-TTTTCAGGCTTCTCTTGGCGGACTGACCTTTCCTTAGGGTGGCTTATCTTTTCTGTGGAGCTCCATTCTCAGGCCTCCTGAGGTTCCCAAAGCTAGGAAG--------TCAGGAAATAAAGGGGACGTGGGGCC----------------AAAATAAAGTTTCAGCTGAGGTAGATGTA---------GAGTAAATGTAGAAAAAACATCCAAACTCTGAAGA i canFam3.chr3 C 0 C 0 a score=980570.000000 s hg38.chr4_KI270790v1_alt 31561 296 + 220246 TTGTTTTAGAACCTCCTATTT-CACATCCTACTCAGCTGTCC--AGAAG--AGAAAGCAGCAAAAACACTC-AGACTCTTGGGGAAACAAGCATTAGGTGGTGGCCAGTGGGGGTTGAGGGGGGAGTCTCTCTTAAAAGGGTGAAGAAAGCACAGATGAAAAGGG------------CCAGGCAATGCAGACTAGTTGTAAAAGCCTAGAAAATAACATCTGAAAGCTTAAAGGGGGGGGTCATAAAAGAGT-----TGGAATAACAAGTTGTGAGCACAGATCAGTGT-AGTCTGAGAGTTGTTTATTGCAGAAAGATC s panTro4.chr4 21419124 295 + 193495092 TTGTTTTAGAACCTCCTATTT-CACATCCTACTCAGCTGTCC--AGAAG--AGAAAGCAGCAAAAACACTC-AGACTCTTGGGGAAACAAGCATTAGGTGGTGGCCAGTCGGGGTTGAGGGGGCAGTCTCTCTTAAAAGGGTGAAGAAAGCACAGATGAAAAGGG------------CCAGGCAATGCAGCCTAGTTGTAAAAGCCTAGAAAATAACATCTGAAAGCTTAAAGTGGGGGG-CATAAAAGAGT-----TGGAATAACAAGTTGTGAGCACAGATCAGTGT-AGTCTGAGAGTTGTTTATTGCAGAAAGATC i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21595570 293 + 198332218 TTGTTTTAGAACCTCCTATTT-CACATCCTACTCAGCTGTCC--AGAAA--AGAAAGCAGCAAAAACACTC-ATACTCTTGGGGAAACAAGCATTAGGTGGTGGCCAATGGGGGTTGAGGGGTGAGTCTCTCTTAAAAGGGTGAAGAAAGCACAGATGAAAAGGG------------CCAGTCAATGCAGCCTAGTTGTAAAAGCCTAGAAAATAACATCTGAAAGCTTAATGTGGGG---CATAAAAGAGT-----TGGAATAACACGTTGTGAGCACAGATCAGTGT-AGTCTGAGAGTTGTTTATTGCAGAAAGATC i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20207526 289 - 85365473 TTGTTTTAGAACCTCCTATTT----ATCCTACTCAGCTGTCC--AGAAA--AGAAAGCAGC-AAAACACTC-AAACTCTTGGGGAAACAAGCATTAGGTGGTGGCCAATGGGGGTTGAGGGGGGAGTCTCTCTTAAAAGCGTGAAGAAAGCACAGATGAAAAGGG------------CCAGTCAATGCAGCCTAGTTGTAAAAGCCTAGAAAATAACATCTGAAAGCTTAAAGTGGGG---CATAAAAGAGT-----TGGAATAACACGTTGTGAGCACAGATCAGTGT-AGTCTGAGAGTTGTTTATTGCAGAGAGATC i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16672798 292 + 184069350 TTGTTTTAGAACCTCCTACTT-CACATCCTCCTCAGCTGTCC--AGAAA--AGAAAGCAGC-AAAACACTCAAGACTCCTGGGGAAACAAGCACTAGGTGCTGGCCAATGGGGGTTGAGAGAGGAGTCTCTCTTAAAAAGGTGAAGAAAGCACAAATGAGAAGGG-------------CAGTCAATGCAGCCTAGTTGTAAAAGCCTAGAAAATAACATCTGAAAGCTTAAAGTGGGG---CATAAAAGAGT-----TGGAATAACACGTTGTGAGCACAGATCAGTGT-AGTCTGAGAGTTGTTTATTGCAGAAAGATC i rheMac3.chr5 I 1 C 0 s macFas5.chr5 20715167 291 + 189454096 TTGTTTTAGAACCTCCTACTT-CACATCCTCCTCAGCTGTCC--AGAAA--AGAAAGCAGC-AAAACCCTC-AGACTCCTGGGGAAACAAGCACTAGGTGCTGGCCAATGGGGGTTGAGAGAGGAGTCTCTCTTAAAAAGGTGAAGAAAGCACAAATGAGAAGGG-------------CAGTCAATGCAGCCTAGTTGTAAAAGCCTAGAAAATAACATCTGAAAGCTTAAAGTGGGG---CATAAAAGAGT-----TGGAATAACACGTTGTGAGCACAGATCAGTGT-AGTCTGAGAGTTGTTTATTGCAGAAAGATC i macFas5.chr5 I 1 C 0 s papAnu2.chr5 16309269 291 + 178775436 TTGTTTTAGAACCTCCTACTT-CACATCCTCCTCAGCTGTCC--AGAAA--AGAAAGCAGC-AAAACACTC-AGACTCCTGGGGAAACAAGCACTAGGTGCTGGCCAATGGGGGTTGAGAGAGGAGTCTCTCTTAAAAGGGTGAAGAAAGCACAAATGAGAAGGG-------------CAGTCAATGCAGCCTAGTTGTAAAAGCCTAGAAAATAACATCTGAAAGCTTAAAGTGGGG---CATAAAAGAGT-----TGGAATAACACGTTGTGAGCACAGATCAGTGT-AGTCTGAGAGTTGTTTATTGCAGAAAGATC i papAnu2.chr5 I 1 C 0 s chlSab2.chr27 19798321 291 - 48547382 TTGTTTTAGAACCTCCTACTT-CACATCCTCCTCAGCTGTCC--AGAAA--AGAAAGCAGC-AAAACACTC-AGACTCCTGGGGAAACAAGCATTAGGTGCTGGCCAATGGGGGTTGAGAGAGGAGTCTCTCTTAAAAGGGTGAAGAAAGCACAGATGAGAAGGG-------------CAGTCAATGCAGCCTAGTTGTAAAAGCCTAGAAAATAACATCTGAAAGCTTAAAGTGGGG---CATAAAAGAGT-----TGGAATAACACGTTGTGAGCACAGATCAGTGT-AGTCTGAGAGTTGTTTATTGCAGAAAGATC i chlSab2.chr27 I 1177 C 0 s calJac3.chr3 21151129 287 - 190850796 TTGTTTTAGAACCTCCTACTT-CACATCCTACTCAGCTGTCA--AGAAA--AGAAAGCAGC-AAAAAACTC-AGACTCTTGGGGAAACAAGCATGAGGTGGTGGCCA-TGGGGGTTGAGGGGGGAATCTCCCTTAAAAGGGTGAAGAAAGCACCAATGAAAAGGG------------CTAGTCAATGCAGCACAGTTGTAAACGCCTAGAAAATAACATCTGAAAGCTTAAAGTGGGG---CAT--AAGAGT-----TGGAATAACATGTTGTGAGCACAGATCAGTGT-AGTCT--GAGTTGTTTATGGCAGAAAGatc i calJac3.chr3 C 0 I 55 s mm10.chr5 49137313 269 + 151834684 GAATTTTATAAGTTCTTTCATACACACTTTACTCTGCTGCCT--GGAAAAGAGAAAGAAGG-AAGTCACTA-AGCCTCTTGGG-----AGGCAC-----------------------AGAATGGAATCT---TTGAAAGGGTGAAGTTGGCA-AGATCAAATGTGATGCTGTTCCTACCAGTTTATGTTGTGTGCCTGTGGAATTCCAGACAAAAAGAGTTGAAAGGTCTGCTTGGGT---CA-AGAGAAGT-----TGGAATCACCCACCTTGAACACA----AGTGTGAGTCT--GAACTGTCTTACTTATGGAGCCC i mm10.chr5 C 0 I 2 s canFam3.chr3 3733141 289 - 91889043 TGGCTTTGCAACTTTTTGGTC-CACATCCTACTCAGCCGTCCCAAGAAG--AGAAAGCAGC-AAGAAGCGT-AGGCTCCTCGAG-AACAAACACAAGGTGGTGACCGGTGGGA----AAAATCCCACCTTTCTGATGAGGGCTGAGAGAGGACTGCTGAGAAGGC-------------CAGTGAGTGCAGCATGGCTGCAGAAGTCTGGGAAACCACATCCGAAAGCAGCAAATGGGG---CATAAAAGAGTGGTGGTGAACTCACATG----GGGCACAGGTGTGCAC-CGTCTGAAAGCTCTCCGCGGTGGAAAGAGC i canFam3.chr3 C 0 C 0 a score=1481376.000000 s hg38.chr4_KI270790v1_alt 31857 582 + 220246 AGAAACGTTCAA-GTGAACCATAGCAAACTT----CAAACTGCCATTCACTTCTCTCACTAGGTTTGTGTTAATCTCCGT-------TCCGTAAATTGAAATCAATGACAGCAGCCTGGCAGAGGCGTTGAGAGAATTGAATGTGATAATATGTATAAAAATACCGGCTGTAA-TAATTGCATATCTTACACTCCCGATGGAGGTCCACTTCTTTTTTCTACTACTAATGCCAATGCTAGA-GGCATAGATAAATAAGAAGCATGGAGACTGAGATGGGCCTCACCTGTCTGGAAGCCTTTTAAG--------------------------ACGCACTTTTCTGGAAGCCTTTTAAAATGCACTTGTCCTACCTGAGAT---TCTCCATTCTGCTTGGTGAGGCACCCTG---ATGAGGCATTTCACATGTGATCACAGGAGATGTCACCAGGATTATTCTGAGTTTTAATTTAGTCGGTTGT-AAATGGGGTCATGATAATTCATCATCTTATGTGGTTGTTAGCATAGTTAAAGGATAAAATGAAA-CAAAGTTCTTTGTGTGTAAATATTAGCTATTGTTATTATTACCCC--------CATTGTTAGCATAAATCAAGAGAgt------gtctgttctcc- s panTro4.chr4 21419419 582 + 193495092 AGAAACGTTCAA-GTGAACCATAGCAAACTT-----AAACTGCCATTCACTTCTCTCACTAGGTTTGTGTTAATCTCTGT-------tccgtaaattgaaatcaatgacagcagcctggcagaggcgttgagagaattgaatgcgataatatgtataaaAATACCGGCTGTAA-TAATTGCATATCTTACACTCCCGATGGAGGTCCACTTCTTTTTTCTACTACTAATGCCAATGCTAGA-GGCATAGATAAATAAGAAGCATGGAGACTGAGATGGGCCTCACCTGTCTGGAAGCCTTTTAAG--------------------------ACGCACTTTTCTGGAAGCCTTTTAAAATGCACTTGTCCTACCTGAGAT---TCTCCATTCTGCTTGGTGAGGCATCCTG---ATGAGGCATTTCACATGTGATCACAGGAGATGTCACCAGGATTATTCTGAGTTTTAATTTAGTCCGTTGT-AAATGGGGTCATGATAACTCATCATCTTATGTGGTTGTTAGCATAGTTAAAGGATAAAATGAAAGCAAATTTCTTTGTGTGTAAATATTAGCTATTGTTATTATTACCCC--------CATTGTTAGCATAAAGCAAGAGAgt------gtctgttctcc- i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21595863 609 + 198332218 AGAAACATTCAA-GTGAACCATAGCAAACTT----CAAACTGCCAttcacctctctcactaggtttgtgttaatctccat-------tccgtaaattgaaatcaatgacagcagcctggcagaggcgttgagagaattgaatgcgataatatgtataaaaatacctgctgtaa-TATTTGCATATCTTACACTCCCGATGGAGGTCCACTTCTTTTTTCTACTACCAATGCCAATGCTAGA-GGCATAGATAAATGAGAAGCATAGAGACTGAGATGGGCCTCAACTGTCTGGAAGCCTTTTAAGATGCACTTTTCTGGAAGCCTTTTAAAATGCACTTTTCTGGAAGCCTTTTAAAATGCACTTGTCCTATCTGAGAT---TCTCCATTCTGCTTGGTGAGGCACCCTG---ATGAGGCATTTCACAtgtgatcacaggagatgtcaccaagattattctgagttttaatttaatccgttgt-aaatggggtcatgataattcatcatcttatgtggttgttaggagagttaaaggataaaatgaaagcaaaTTTCTTTGTGTGTAAATATTAGCTATTGTTATTATTACCCC--------CATTGTTAGCATAAAGCAAGAGAgt------gtctgttctcc- i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20207815 557 - 85365473 AGAAACGTTCAA-GTGAACCATAGCAAACTT----CAAATTGCCATTCACCTTTctcactgggtttgtgttaatctccat-------tctgtaaattgaaatcaatgacagcagcctggcagaggggttgggagaattgaatgcaataatatgtataaaaatacctgctgtaa-TATTTGCATATCTTACACTCCCGACGGAAGTCCACTTCTTTTTTCTACTACTAAAGCCAACGCTAGA-GGCATAGGTAAATAAAGAGCATGGAGACTGAGATGGGCCTCACCTGTCTGGAAGCCTTTTAAA----------------------------------------------------ATGCACTTGTCCTACCTGAGAT---TCTCCATTCTGCTTGGTGAGGCACCCTG---ATGAGGCATTTCACACGTGATCACAGGAGATGTCACCAAGATTATtctgagttttaatttagtccgttgt-aaatggggtcatgataattcatcatcttatgtggttgttaggacagttaaaggataaaatgaaagcaaaTTTCTTTGTGTGTAAATATTAGCTATTGTTATTATTACCCC--------CATTGTTAGCATAAGGCAAGAGAgt------gtctgttctcc- i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16673090 582 + 184069350 AGAAATGTTCAA-GTGAACCATAGCAAACTT----CCAATTGCCATTCACCTCTCTCACTAGGTTTGTGTTAATCTCCAT-------TCCGTAAATTGAAATCGATGACAGTAGCCTGCCAGAGACGTTGAGAGAATTGAATGCAATAACATGTATAAAAATACCTGCTGTAA-TATTTGCATGTCTTACACTCCCGATGGAGGTCTACTTCTTTTTTCTACTACTAATGCCAATGCTAGA-GGCATAGTCAAATAAGGAGCATGGAGACTGAGATGGGCA-CACCTGTTTGGAAGCCTTCTAAG--------------------------ATGCATTTGTCTGGAAGCCTTTTAAAATGCACTTGTCCTACCTGAGAT---TCTCCATTCTGCTTGGTGAGGCACCTTG---ATGAGGCATTTCACATGTGATCACATGAAATGTCACCAAGATTTTTCTGAGTTTTAATTTAGTGCGTTGT-AAATGAGGTAATGATAATTCATCATCTTATGTGGTTGTTAGGATAGTTAAAGGACAAAATGAAAGCAAATTTCTTTGTGCGTAAATATTAGTTATTGTTATTATTATCCC--------CATTGTTAGCATAAAGCAAGAAAgt------gtctgttctcc- i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20715458 582 + 189454096 AGAAATGTTCAA-GTGAACCATAGCAAACTT----CCAATTGCCATTCACCTCTCTCACTAGGTTTGTGTTAATCTCCAT-------TCCGTAAATTGAAATCGATGACAGTAGCCTGCCAGAGACGTTGAGAGAATTGAATGCAATAACATGTATAAAAATACCTGCTGTAA-TATTTGCATGTCTTACACTCCCGATGGAGGTCTACTTCTTTTTTCTACTACTAATGCCAATGCTAGA-GGCATAGTCAAATAAGGAGCATGGAGACTGAGATGGGCA-CACCTGTTTGGAAGCCTTTTAAG--------------------------ATGCATTTGTCTGGAAGCCTTTTAAAATGCACTTGTCCTACCTGAGAT---TCTCCATTCTGCTTGGTGAGGCACCTTG---ATGAGGCATTTCACATGTGATCACATGAAATGTCACCAAGATTTTTCTGAGTTTTAATTTAGTGCGTTGT-AAATGAGGTCATGATAATTCATCATCTTATGTGGTTGTTAGGATAGTTAAAGGACAAAATGAAAGCAAATTTCTTTGTGCGTAAATATTAGTTATTGTTATTATTATCCC--------CATTGTTAGCATAAAGCAAGAAAgt------gtctgttctcc- i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16309560 582 + 178775436 AGAAATTTTCAA-GTGAACCATAGCAAACTT----CCAATTGCCATTCACCTCTCTCACTAGGTTTGTGTTAATCTCCAT-------TCCGTAAATTGAAATCAATGACAGTAGCCTGCCAGAGACGTTGAGAGAATTGAATGcaataatatgtataaaaatacctGCTGTAATTATTTGCATGTCTTACACTCCCGATGGAGGTCTACTTCTTTTTTCTACTACTAATGCCAATGCTAGA-GGCATAGTCAAATAAGGAGCATGGAGACTGAGATGGGCC-CACCTGTTTGGAAGCCTTTTAAG--------------------------ATGCATTTGTCCGG-agccttttaaaatgtacttgtCCTACCTGAGAT---TCTCCATTCTGCTTGGTGAGGCACCTTG---ATGAGGCATTTCACATGTGATCACATGAACTGTCACCAagatttttctgagttttaatttAGTGCATTGT-AAATGAGGTCATGATAGTTCATCATCTTATGTGGTTGTTAGGATAGTTAAAggacaaaatgaaagcaaatttcTTTGTGTGtaaatattagttattgttattattatccc--------cattgttAGCATAAAGCAAGAGAGT------GTCTGTTCTCc- i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19798612 582 - 48547382 AGAAATGATCAA-GTGAACCATAGCAAACTT----CCAATTGCCAttcacctctctcactaggtttgtgttaatctccat-------tctgtaaattgaaatcaatgacagcagcctgccagagacgttgagagaattgaatgcaataatatgtataaaAATACCTGCTGTAA-TATTTGCATGTCTTACACTCCCGATGGAAGTCCACTTCTTTTTTCTACTACTAATGCCAATGCTAGA-GGCATAGTCAAATAAGGAGCATGGAGACTGAGATGGGCC-CACCTGTTTGGAAGCCTTTTAAG--------------------------ATGCATTTGTCTGGAAGCCTTTTAAAATGCACTTGTCCTACCTGAGAT---TCTCCATTCTGTTTGGTAAGGCACCTTG---ATGAGGCATTTCACATGTGATCACATGAGATgtcaccaagatttttctgagttttaatttagtgcattgt-aaatgaggtcatgataattcatcatcttatgtggttgttaggatagttaaaggacaaaatgtaagcaaaTTTCTTTGTGCGTAAAtattagttattgttattattatccc--------cattgttaGCATAAAGCAAAAGAGT------GTCTGTTCTCC- i chlSab2.chr27 C 0 C 0 s mm10.chr5 49137584 495 + 151834684 AGGAACATTCAGTATCAGCCATAACAGACTTTGGACAGACTGTCAAGCATCTTTCACAAT---TTTGTGGT----TTCAT-------GGTGAGAACGATATCCAACAGTAACAGCCTCT----AGTTTCCAGAGAAATGAATGAGGAAGTAGGTATGGAAGTCCCCATT-TGA-TGTTTTTGT--------------ATGAATCCTTTTCTCTTTTTCCTGCTGCTAATACCAATGCTAAACTTCACCTGTACCTAAGGCATACACAG-----TACAGGCT-------------GGCCTTCAAAA-----------------------------------TCTGG-AGCCTTCAAAGATGTGCAGGCTTCTCCTCAGGTGGATCTCCATTCTGAGTCCTGTGGCATCTTA---GT--GGCA------AAACAATCTCAGGA---------------------------AACTGAATGGGTTGT-AAACGAAATTATAGATATTCAGCATCCCATGTGTTTGGTAGAATTATTAATGGAGAAAATGAAA--AAGTGAAGTGGTGTGTCAGGGTTTGCTTTCATTATTAATATACTAATAATAGCTTTGGATACAAGGACCAGGAA--------------------- i mm10.chr5 I 2 C 0 s canFam3.chr3 3733430 542 - 91889043 GGGGACTTTCGG-GTCAGCCACAGCAGGCTT----CACAAGGCC---TCCCTCTCTCTTCAGCTCTGGGCTAATATTCGTCTCCACGTCTGTAAACTGAGGCCAACAATGACAGCCTCCCACAAGTGCCAAGAGGCCCGACTGAGATGATGTGGGCAGAAATACCGACGGCAG-GATTTGTGTATGTCACGCTCCCAGGGGAGGTTTG-TTCTGTTCTCTGCTACTCATGCCGATGCTAGAAAACACAGGGCGATGGGGGGTGCAGAGTCGGAGCGGGGCCACACCCGTCGAGAGGACTTCAGAG--------------------------ATG------------------------------------------------TCCCCCCTTGACTTGCTGAGGAGTCTTAGCTACGAAGC--------TGTGATCTCAGGGCATGTGGTTGAGATTTCTCTGAGCTTGGATGTGGTTACTTGTGAAGTGAGGTGGTGACAATTCATTATC--ATGTGATTGTTGGGGACACTGAAGGAGAAAACCAAAGCAAATGGCTTGGAATGTTAATATTTACCCTT-TTATTATCACCAT--------CATCCTTCATACAGGCTGAGAGAGTCAAGAGCTCTATCTTCTC i canFam3.chr3 C 0 C 0 e calJac3.chr3 21151416 55 - 190850796 I a score=1028294.000000 s hg38.chr4_KI270790v1_alt 32439 317 + 220246 acctttcccttctttaatggagacactggtcactagatttagga----cttaccccaa------aatgattttgtcctgaaatccttaccttaattatacctaaaaagttcatttttccaaa-----tcaccttcacaggttttctcaggcttaagagagtgacatatctttcagtggggaaggggcacaattcaacccaCTATggggagttagaagttaagcatgtaaatggacatacattattatgta-atgccaagtagtgataaatgctctaaag--taaaaataaagccatataaggggataag-ggtgagtggaggatgctctttggaga s panTro4.chr4 21420001 317 + 193495092 acctttcccttctttaatggagacactggtcactagatttagga----cttaccccaa------aatgattttgtcctgaaatccttaccttaattatacctaaaaagttcatttttccaaa-----tcaccttcacaggttttctcaggcttaagagagtgacatatctttcggtggggaaggggcacaattcaacccaCTATggggagttagaagttaagcatgtaaatggacatacattattatgta-atgccaagtagtgataaatgctctaaag--taaaaataaagccatataaggggataag-ggtgagtggaggatgctctttggaga i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21596472 317 + 198332218 acctttcccttctttaatgaagacactggtcactagatttagga----cttaccccaa------aatgattttgtcctgaaatccttaccttaattatacctaaaaagttcatttttccaaa-----tcacattcataggttttctcaggcttaagagattgacatatcttttggtggggaaggggcaaaattcaatctaCTATggggagttagaagttaagcatgtaaatggacatacattattatgta-atgccaagtagtgacaaatgctctaaag--taaaaataaagtcatgtaaggggataag-ggtgagtggaggatgctctttggaga i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20208372 317 - 85365473 acctttcccttctttaatgaagacactggtcactggatttagga----cttaccccaa------aatgattttgtcctgagatctttaccttaattatacctaaaaagttcatttttccaaa-----tcacattcacaggttttctcaggcttaagagattgacatatcttttggtggggaaggggcacaattcaacccaCCATggggagttagaagttaagcatgtaaatggacatacattattatgta-atgccaagtagtgataaatgctctaatg--taaaaataaagccatataaggggataag-ggtgagtggaggatgctctttggaga i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16673672 317 + 184069350 accttttccttctttaatgaagacactggtcactggatttagga----cttaccccaa------agtgattttgtcctgagatccttaccttaattatacctaaaaagttcatttttccaaa-----tcaca-tcacaggttttctcaggcttaagagattggcatatgttttggtggggaggggacacaattcaaaccaCtgtggggagttagaagttgagcatgtaaatggatatacattattatgta-atgccaagcagtgataaaagctctaaag-aaaaaaatgaagccatataaggggataag-gatgagtgaaggatgatctctggaga i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20716040 317 + 189454096 accttttccttctttaatgaagacactggtcactggatttagga----cttaccccaa------agtgattttgtcctgagatccttaccttaattatacctaaaaagttcatttttccaaa-----tcaca-tcacaggttttctcagtcttaagagattggcatatcttttggtggggaggggacacaattcaaaccaCtgtggggagttagaagttgagcatgtaaatggatatacattattatgta-atgccaagcagtgataaaagctctaaag-aaaaaaatgaagccatataaggggataag-gatgagtgaaggatgatctctggaga i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16310142 317 + 178775436 accttttccttctttaatgAAGACACTGGTCACTGGATTTAGGA----CTTACCCCTA------AATGATTTTGTCCTGAGATCCTTACCTTAATTATAcctaaaaagtttatttttccaaa-----tcacA-TCACAGGTTTTCTGAGACGTAAGAGATTGACATATCttttggtggggagggggcacAACTCAAACCACTGTGGGGAGTTAGAAGTTGAGCATGGAAATGGATATACATTATTATGTA-ACACCAAGCAGTGATAAatgctctaaag-aaaaaaatgaagccatATAAGGGGATAAG-GATGAGTGAAGGATGCTCTCTGCAGA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19799194 317 - 48547382 ACCTTTCCCTTCTTTAATGAAGACATTGGTCACTGGATTTAGGA----CTTACCCCTA------AATGATTTTGTCCTGAGATCCTTACCTTAATTATACCTAAAAAGTTTATTTTTCCAAA-----TCACA-TCACAGGTTTTCTCAGGCTTAAGAGATTGACATATCTTTTGGTGGGGAGGGGGCAAAATTCAAACCACTATGGGGAGTTAGAAGTTGAGCATGGAAATGGATATACATTATtatgta-atgccaagcagtgataaatgctctaaag-aaaaaaatgaagccatataaggggataag-gatgagtgaaggatgctctctgcaga i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21151471 319 - 190850796 acctttctcctttttaatgaagacacttgccactggatttagga----cttaccccag------aatgattttgtcctgagatccttaccttaaatgtgtctaaaaagcccatttttctaaa-----tcacattcataggtttcctcaggtttgagagattgacatatattttggtggagaagggatacaattcaacccaCTATggtgagttagaagctaagcatgtaaatgaacatacattattatgta-atgccaagtagtgataaatactctaaagaaaaaaaattaagccatctcagtgggtaag-gataagtagaggtcgctctttggaga i calJac3.chr3 I 55 C 0 s mm10.chr5 49138079 275 + 151834684 -----------CTCTTATAAAGACAATTATCATTGGATTCAGTA----GCTATTCTAAGTTCGTGCTGATTTTATCCTAATATTCTTATATTTGCTTTTCCCAAATAAT------------A-----TCAAATTCGCAGGTTT-CTCAGAATTA-------GGTTTAACTC----TGTGGGAGGGGTGAAGGACAATCCTCT------AATTAGAAATTAAAAAC--AAAAGAATG-----TATTCTGTATATGCC-AGTTGAGATAAGCATTTTGAAG--AGCAATAGCAGTCATGTGATGGGATCAG-GAAGAATGGAGAttgcttgtgggaaa i mm10.chr5 C 0 I 510 s canFam3.chr3 3733972 288 - 91889043 CCTTttttcttcttttataaacacgc--atccatggatttggggccccctgactccca------cgtgatttcatcccaat-tcctaacctgcattacatctgcgaagaccctttttccaaacgaggtcatattaataggttc-cccag--ttgggaaaagtacatatcttc------agggggatcacaattcaatccactacaGGAAGTTTGATACTGAGCATATAAATTGCCG-----TATtacaga-atgtcaagtggtgatgagtgctctgaag------------------------ggtaagctgtaagtgggggatgctctctggaga i canFam3.chr3 C 0 C 0 a score=33994.000000 s hg38.chr4_KI270790v1_alt 32756 11 + 220246 cagcagtcagt s panTro4.chr4 21420318 11 + 193495092 cagcagtcagt i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21596789 11 + 198332218 cagcagtcagt i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20208689 11 - 85365473 cagcagtcagt i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16673989 11 + 184069350 cagcagtcagt i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20716357 11 + 189454096 cagcagtcagt i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16310459 11 + 178775436 CAGCAGTCAGT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19799511 11 - 48547382 cagtagtcagt i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21151790 11 - 190850796 cagcagtcagt i calJac3.chr3 C 0 C 0 s canFam3.chr3 3734260 11 - 91889043 ggatgctctct i canFam3.chr3 C 0 I 6 e mm10.chr5 49138354 510 + 151834684 I a score=727186.000000 s hg38.chr4_KI270790v1_alt 32767 199 + 220246 aaaggcctcctgaagaggtgacatctgagctaagatgtgact--------gagagagtgagacatgca-atatgggggacatgtgttagaggcagaaggagcagcaaatgcagagagctgagccaggaaagtcaagaaaaatcagagtggctggtggcacagcaagtgagcaggccagcagcagggaaagaga----gcagggggctgtgct s panTro4.chr4 21420329 199 + 193495092 aaaggcctcctgaagaggtgacatctgagctaagatgtgact--------gagagagtgagacatgca-atatgggggacatgtgttagaagcagaaggagcagcaaatgcaaagagctgagccaggaaagtcaagaaaaatcagagtggctggtggcacagcaagtgagcaggccagcagcagggaaagaga----gcagggggctgtgct i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21596800 199 + 198332218 agaggcctcctgaagaggtgacatctgagctaagatgtgact--------gagagagtgagacatgca-atatgggggacatgtgttagaggcagaaggagcagcaaatgcagagagctgagccaggaaagtcaagaaaaatcagagtggctggtggcacagcaagtgagcaggccagcagcagggaaagaga----gcagggggctgtgct i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20208700 197 - 85365473 aaaggcctcctgaagaggtgacatctgagctaagatgtgact--------gagagagtgagacatgaa-atatgtgggacatgtgttaggggcagaaggagcagcaaatgcagagagctgagccaggaaagtcaagaaaaatcagagtggctggtggcacagcaagtgagcaggccagcagcagggaa--aga----gcagggggCTGTGCT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16674000 199 + 184069350 aaaggcctcctgaagaggtgacatctgagctaagatgtgact--------gagagagtgagacatgca-atatgggggacatgtgttagaggcagaaggagcagcaaatgcagagagctgagccaggaaagccaagaaaaatcagagtggctggtggcacagcaagtgagcaggccagcagcagggaaagaga----gcagggggctgtgct i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20716368 199 + 189454096 aaaggcctcctgaagaggtgacatctgagctaagatgtgact--------gagagagtgagacatgca-atatgggggacatgtgttagaggcagaaggagcagcaaatgcagagagctgagccaggaaagccaagaaaaatcagagtggctggtggcacagcaagtgagcaggccagcagcagggaaagaga----gcagggggCTGTGCT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16310470 199 + 178775436 AAAGGCCTCCTGAAGAGGTGACATCTGAGCTAAGATGTGACT--------GAGAGAGTGAGACATGCA-ATATGGGGGACATGTGTTAGAGGCAGAAGGAGCAGCAAATGCAGACAGCTGAGCCAGGAAAGCCAAGAAAAATCAGAGTGGCTGGTGGCACAGCAAGTGAGCAGGGGAGCAGCAGGGAAAGAGA----GCAGGGGGCTGTGCT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19799522 199 - 48547382 taaggcctcctgaagaggtgacatctgagctaagatgtgact--------gagagagtgagacatgca-atatgggggacatgtgttagaggcagaaggagcagcaaatgcagacagctgagccagggaagccaagaaaaatcagagtggttggtggcacagcaagtgagtaggcgagcagcagggaaagaga----gcagggggCTGTGCT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21151801 197 - 190850796 agaggcctcccgaagagctgatatctgagctaagatgtgact--------gagaaagtgagacatgca-at-tgggggacatgtgttagaggcagaaggagcagcaaatgcaaagagctgagccagaaaagtcaagaaaaatcagagcggct-gtggcacagcaagtgagcaggcctgcagcagggaaaggga----gcagggggatgtgct i calJac3.chr3 C 0 C 0 s mm10.chr5 49138864 193 + 151834684 AAAGACCTCCTACTGAGGTAACCTTTAAACAAAGGAAAGAATGATACCAGGAAAGATGGTGATATGCAGAGACAGAGGATATACATGCCAGTCAGGAAAATCACCAAAGGCAAA-ATTAGAAACAGGAGAGT---GAACAAACAGGGTGGCTACAGGCACA-----TGAGAAGAC---CAGGAAGGAAAGAAA----GAGAAGAAAAAC--- i mm10.chr5 I 510 C 0 s canFam3.chr3 3734277 204 - 91889043 aaaggtctcctga--gggtggcagctgagccaaaagctgaatgatgctg-gagacagtaaggcatgcaaatcaatgggacatatgttctagggggagggagcagcaaatgcaaagacctgagactggaagatcca----agtcggggtggctggaagcacagc-agagagcagtgcagtaacaggggaagagatgggggggggggttgtGat i canFam3.chr3 I 6 I 343 a score=3276.000000 s hg38.chr4_KI270790v1_alt 32966 1 + 220246 t s panTro4.chr4 21420528 1 + 193495092 t i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21596999 1 + 198332218 t i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20208897 1 - 85365473 T i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16674199 1 + 184069350 t i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20716567 1 + 189454096 T i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16310669 1 + 178775436 T i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19799721 1 - 48547382 T i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21151998 1 - 190850796 t i calJac3.chr3 C 0 C 0 e mm10.chr5 49139057 0 + 151834684 C e canFam3.chr3 3734481 343 - 91889043 I a score=1501569.000000 s hg38.chr4_KI270790v1_alt 32967 387 + 220246 gtcacaa-gaggatt-ttgcattttattctaggtttgatggggagccaagactgggctaagaacagcagagtcatatTCAATTTC---------------TAAGGCAGACATTCTATTTTAAACCAAACTCCAGACGTGGAGCTAAAGATTTAAGTGGTATTATAATATCCTCGAATAATT-GCTCTGATAATGAG--AAAACACCAAGAGCAATTCTTTGCCAATATTAGAACTAAATTCAGTTTGTCCTACCATGTCTTTTCATTATCTTGTGCTTCACTGAACATGTCACGAGtttgcagaaacaattccttctgcctgcatgcccttccccagtgtgccccctcactctgctgtggcttgtccctggtttgtgtcacgtcccccagataaggtcactcacact s panTro4.chr4 21420529 387 + 193495092 gtcacaa-gaggatt-ttgcattttattctaggtttgatggggagccaagactgggctaagaacagcagagtcatatTCAATTTC---------------TAAGGCAGACATTCTATTTTAAACCAAACTCCAGACGTGGAGCTAAAGATTTAAGTGGTATTATAATATCCTCGAATAATT-GCTCTGATAATGAG--AAAACACCAAGAGCAATTCTTTGCCAATATTAGAACTAAATTCAGTTTGTCCTACCATGTCTTTTCATTATCTTGTGCTTCACTGAACATGTCACGAGtttgcagaaccaattccttctgcctgcatgcccttccccagtgtgccctctcactctgctgtggcttgtccctggtttgtgtcacgtcccccagataaggtcactcaccct i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21597000 387 + 198332218 gtcacaa-gaggatt-ttgcattttattctaggtttgatggggagccaagactgggctaagaacagcagagtcatatTCAATTTT---------------TAAGGCAGACATTCTATTTTAAACCAAACTCCAGACGTGGAGCTAAAGATTTAAGTGGTATTATAATATCCTCGAATAATT-GCTCTGATAATGAG--AAAACTCCAAGAGCAATTCTTTGCCAATATTAGAACTAAATTCAGTTTGTCCTACCATGTCTTTTCATCATCTTGTGCTTCACTGAAAATGTCATGAGtttgcagaaacgattccttccgcctgcatgcccttccccagtgtgtcccctcactctgctgtggcttgtccctggtttgtgtcacgtcccccagataaggtcactcaccct i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20208898 386 - 85365473 GTCACAA-GAGGATT-TTGCATTTTATTCTAGGTTTGATGGGGAGCCAAGACTGGGCTAAGAACAGCAGAGTCATATTCAATTTT---------------TAAGGCAGACATTCTATTTTAAACCGAACTCCAGACGTGGAGCTAAAGATTTAAGTGGTATTATAATATCCTCGAATAATT-GCTCTGATAATGAG--AAAACACCAAGAGCAATTCTTTGCCAATATTAGAACTAAATTCAGTTTGTGCTACCATGTCTTTTCATCATCTTGTGCTTCACTGAACATGTCACGAGtttgcagaaatgattccttctgcctgcatgcccttccccagtgtgccccctcgctctgctgtggcttgttcctggtttgtgtcacct-ccccagataaggtcgctcaccct i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16674200 383 + 184069350 gtcacaa-gaggatt-ttgcattttattctaggtttgatggggagccaagactgggctaagaacagcagagtcatatTCAATTTT---------------TAAGGCAGACATTCTATTTTAAACCAAACTCCAGACGTGGACCTAAAGATTTAAGTGCTATTATAATATCCTCGAATAATT-GCTCTGACAATGAGACAAAACACCAAGAGCAATTCTTTGCCAATATTAGAACTAAATTCAGTTTGTCCTACCATG-----TCATCATCTTGTACTTCACCGAACATGTCATGAGtttgcagaaacgattccttctgcctgcatgcccttccccagtgtgccccctcgctccgctgtggcttgtccctggtttgtgtcacct-ccccagataaggtcattcatcct i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20716568 383 + 189454096 GTCACAA-GAGGATT-TTGCATTTTATTCTAGGTTTGATGGGGAGCCAAGACTGGGCTAAGAACAGCAGAGTCATATTCAATTTT---------------TAAGGCAGACATTCTATTTTAAACCAAACTCCAGACGTGGACCTAAAGATTTAAGTGCTATTATAATATCCTCGAATAATT-GCTCTGACAATGAGACAAAACACCAAGAGCAATTCTTTGCCAATATTAGAACTAAATTCAGTTTGTCCTACCATG-----TCATCATCTTGTACTTCACCGAACATGTCATGAGtttgcagaaacgattccttctgcctgcatgcccttccccagtgtgccccctcgctccgctgtggcttgtccctggtttgtgtcacct-ccccagataaggtcattcatcct i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16310670 383 + 178775436 GTCACAA-GAggatt-ttgcattttattctagGTTTGATGGGGAGCCAAGACTGGGCTAAGAACAGCAGAGTCATATTCAATTTT---------------TAAGGCAGACATTCTATTTTAAACCAAACTCCAGACGTGGACCTAAAGATTTAAGTGCTATTATAATATCCTCGAATAATT-GCTCTGACAATGAGACAAAACACCAAGAGGAATTCTTTGCCAATATTAGAACTAAATTCAGTTTGTCCTACCATG-----TCATCATCTTGTGCTTCACCGAACATGTCATGAGTTTGCAGAAACGATTCCTTCTGCCTGCATGCCCTTCCCCAGTGTGCCCCCTCGCTCTGCTGTGGCTTGTCCCTGGTTTGTGTCACCT-CCCCAGATAAGGTCATTCATCCT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19799722 383 - 48547382 GTCACAA-GAGGATT-TTGCATTTTATTCTAGGTTTGATGGGGAGCCAAGACTGGGCTAAGAACAGCAGAGTCATATTCAATTTT---------------TAAGGCAGACGTTCTATTTTAAACCAAATTCCAGACGTGGACCTAAAGATTTAAGTGCTGTTATAATATCCTCGAGTAATT-GCTCTGACAATGAGACAAAACACCAAGAGCAATTCTTTGCCAATATTAGAACTAAATTCCGTTTGTCCTACCATG-----TCATCATCTTGTGCTTCACTGAACATGTCATGAGtttgcagaaacgattccttctgcctgcatgcccttccccagtgtgccccctcgctctgctgtggcttgtccctgctttgtgtcacct-ccccagataaggtcattcatcct i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21151999 388 - 190850796 gtcatga-gaggatt-ttgcattttattctaggtttgatggggagccaagactggactaagaacagcagagtcatatTCAATTTT---------------TAAGGCAGACACTCTATTTTAAACCAAACTCCAGACGTGGACCTAAAGATATAAGTGCTATTACAACATCCTCAAATAATT-GCTCTAATAATGAGACAAAACACCAAGAGCAATTCTTTGGCAATTTTAGAACTAAATTCAGTTTGTCCTACCATATCTTTACATCATCTTGTGCTTCACTGAACATGTCATGAGTCCGCAGAAATGAttccttctgcctgcatgcccttcgccagcgtgcctccttgctctgctgtggcttgtccctggtttgtgtcgcct-ccccagataaggtcactcaccct i calJac3.chr3 C 0 C 0 s mm10.chr5 49139057 394 + 151834684 -TAACAG-GGTTATTCTTGCATTTAATTCTACAGTTAATGGCTAGCCAGGGCT-GCCCAAGAGGAGGAGAGCAATATTCAACTTTAGGCATACTAAACCCTAAGGAAGACATTCCTACTGAAACAAAACCCCAGAC--------AAGAATTTGAATGTTGGTATATTATCTTCAAGTAATTCGTTCTAATAATGAGATAAAATTTCAAGCACAAATCTTTGCCAGTCTTA-AATTGAATTTGGTGTAACCTACCATTCTTTGTCATTATCTTATGCTTCACTGGACATGCCAAGAAAGTACTATAAAGATTCCTTCTGCATGCATGCCCTTCTCTACTCTGACTTCCTTCTCAGCTGTGAATTATCTCTGGCTTGTGCTACCT-CCCTGGGCAAGGTCACTCACCCT i mm10.chr5 C 0 I 88 s canFam3.chr3 3734824 374 - 91889043 gtcacagcgaggatt-atgtatttgattcccagttagatggggagccaaggcaaagctgagagcagcggtgtcacCTTC-GTCTT---------------GAGGGCAGACATTCTATTTCGAACCAAACCCCAGACACAGGCCTACACATTTAA-----AATATTACATCCTCAAATAATTAGTTCTAATCATGAGGGCAAGCTCCGAGGGCAACTCTTTGCCAATATTAAAACTAAACTCCACTTTCCCTACCATTTCTTTTCAACAGCTTTTGCTTCACTGGACATGTcatgcgtttgcataaatgattccttctgcctgcgtgcccttcccca-tattcctcctcccactg---------gtcccctggttgtctcaact-ccccagagaagcccgctcaccct i canFam3.chr3 I 343 C 0 a score=151622.000000 s hg38.chr4_KI270790v1_alt 33354 44 + 220246 tcctccatgctccaaggcgcttattgccctgggtgcctactttc s panTro4.chr4 21420916 44 + 193495092 tcctccatgctccaaggtgcttattgccctgggtgtctactttc i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21597387 44 + 198332218 tcctccatgctccaaggtgcttattgccctgggtgcctactttc i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20209284 44 - 85365473 tcctccatgctccaaggcgcttattgccctgggtgcctactttc i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16674583 44 + 184069350 tcctccatgctccaaggtgctttttgccctaggtgcctactttc i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20716951 44 + 189454096 tcctccatgctccaaggtgctttttgccctaggtgcctactttc i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16311053 44 + 178775436 TCCTCCATGCTCCAAGGTGCTTTTTGCCCTAGGTGCCTACTTTC i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19800105 44 - 48547382 tcctccatgctccaaggtgctttttgccctaggtgcctactttc i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21152387 44 - 190850796 tcctccctgctccaaggcacttattgccctgggtgcctattttc i calJac3.chr3 C 0 C 0 s canFam3.chr3 3735198 40 - 91889043 tcctccatgctccagggcacctattcccccgagcatttcc---- i canFam3.chr3 C 0 C 0 e mm10.chr5 49139451 88 + 151834684 I a score=595249.000000 s hg38.chr4_KI270790v1_alt 33398 172 + 220246 -tcctatcattacca----tctgtttacaagccttcctccttttc--------tga-ctgtac----agttctttatggtcacatgtaaatcttattaatctt-----catattaccagaaactag-------cacactgcacactaggtactgaataaa----tgttaaatgaatgagtgaatCTTGGTCCTATTCAATTTTATT s panTro4.chr4 21420960 172 + 193495092 -tcctatcattacca----tctgtttacaagccttcctccttttc--------tga-ctgtac----agttctttatggtcacatgtaaatcttattaatctt-----catattaccagaaactag-------cacactgcacactaggtactgaataaa----tgttaaatgaatgagtgaatCTTGGTCCTATTCAATTTTATT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21597431 176 + 198332218 -tcgtatcattacca----tctgtctacaagccttcctccttttc--------tga-ctgtac----agttctttatggtcacatgtaaatcttattaatctt-----catattaccagaaactag-------cacactgcacactaggtactgaataaatgtttgttaaatgaatgagtGAATCTTGGTCCTATTCAATTTTATT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20209328 176 - 85365473 -tcgtatcattacca----tctgtttacaagccttcctccttttc--------tga-ctgtac----agttctttatggtcacatgtaaatcttattaatctt-----catattaccagaaactag-------cacactgcacactaggtgctgaataaatgtttgttaaatgaatgagtGAATCTTGGTCCTATTCAATTTTATT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16674627 176 + 184069350 -tcatatcattacca----tctgtttacaagcctttccccttttc--------tga-ctgtac----agttctttatgatcacatgtaaatcttattaatctt-----catattcccagacactag-------cacactgcacactaggtgctgaataaacgtttgttaaataaatgagtGAATCTTGGTCCTATTCAATTTGATT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20716995 176 + 189454096 -tcatatcattacca----tctgtttacaagcctttccccttttc--------tga-ctgtac----agttctttatgatcacatgtaaatcttattaatctt-----catattcccagacactag-------cacactgcacactaggtgctgaataaatgtttgttaaataaatgagtGAATCTTGGTCCTATTCAATTTGATT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16311097 176 + 178775436 -TCATATCATTACCA----TCTGTTTACAagcctttctccttttc--------tga-ctGTAC----AGTTCTTTATGATCACATGTAAATCTTATTAATCTT-----CATATTCCCAGAAACTAG-------CACACTGCACACtaggtgctgaataaatgtttgttaaatgaatgagtgaatcttGGTCCTATTCAATTTGATT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19800149 176 - 48547382 -tcatatcattacca----tctgtttacaagcctttctccttttc--------tga-ctgtac----agttctttatgatcacatgtaaatcttattaatctt-----catattcccagaaactag-------cacactgcacactaggtgctgaataaatgtttgttaaatgaatgagtGAATCTTGGTCCTATTCAATTTGATT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21152431 174 - 190850796 -ttatgtcattacca----tctgtttgcaagccctccttcctctc--------tgg-ccgtac----agttctttacggtcacatgtaagtgttattaatctt-----cgtact-ccaga-atgaa-------cgcactgcacactaggtgctgaataaatgtgcattaaatgaataagtGAATATTGGTCTTATTCACTTTGATT i calJac3.chr3 C 0 C 0 s mm10.chr5 49139539 195 + 151834684 -tcccaccctcatcaagttcctccctccatccccacccccttcccctctgagaTGA-CTGTATAGTAAGTATATTATGGTCATGTCT-----TTTCCAAGCATGCCACTGTAGTGTCATAGACTAGCCATAGACAAACTATATCCTAGGCATGG----GAGGCTGCTCAAATGAGTGAGTGAATCACAGTCTTAGTCAACTTTGTT i mm10.chr5 I 88 I 716 s canFam3.chr3 3735238 177 - 91889043 ctcactggacttctg-----ctgtttacaagcctgcttccccgac--------aggcctgcag----gactctttatggccacatctacgcctttttcagctt-----ggtagtcctggaaactgg-------cacaatccacagtaggtgccgaatacatgtttgctaaatgtgtaaatgaatCTTGGTCTTATTCAATTTGATT i canFam3.chr3 C 0 C 0 a score=172456.000000 s hg38.chr4_KI270790v1_alt 33570 47 + 220246 TTGCCTGGGTTTATATATTCTCCATCCCACTATTTAAATAAACATAG s panTro4.chr4 21421132 47 + 193495092 TTGCCTGGGTTTATATATTCTCCATCCCACTATTTAAATAAACATAG i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21597607 47 + 198332218 TTGCCTGAGTTTATATATTCTCCATCCCACTATTTAAATAAACATAG i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20209504 47 - 85365473 TTGCCTGGGTTTATATATTCTCCATCCCACTATTTAAATAAACACAG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16674803 47 + 184069350 TTGCCTAGGTTTATCTATTCTCCATCCCACTATTTTAATAAACATAG i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20717171 47 + 189454096 TTGCCTAGGTTTATCTATTCTCCATCCCACTATTTTAATAAACATAG i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16311273 47 + 178775436 TTGCCTAGGTTTATCTATTCTCCATCCCACTATTTAAATAAAcatag i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19800325 47 - 48547382 TTGCCTAGGTTTATCTATTCTCCATCCTACTATTTAAATAAACATAG i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21152605 47 - 190850796 TTGCCTGGGTTTATATATTCTCCATCCCATTATTTAAATAAACATAG i calJac3.chr3 C 0 C 0 s canFam3.chr3 3735415 45 - 91889043 TTGCCTTGGTTTATTTAT--TCCATCCCACTATTTAATTAAACATAG i canFam3.chr3 C 0 I 1274 e mm10.chr5 49139734 716 + 151834684 I a score=119068.000000 s hg38.chr4_KI270790v1_alt 33617 41 + 220246 AC-TTTTTTCTTCTGTTATTTAATGAATAGCCTATAGAAAGG s panTro4.chr4 21421179 41 + 193495092 AC-TTTTTTCTTCTGTTATTTAATGAATAGCCTATAGAAAGG i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21597654 41 + 198332218 AC-TTTTTTCTTCTGTTATTTAATGAATAGCCTATAGAAAGG i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20209551 41 - 85365473 AC-TTTTTTCTTCTGTTATTTAATGAATAACCTATAGAAGGG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16674850 42 + 184069350 ACTTTTTTTCTTCTGTTATTTAATGAATGGCCTATAGAAGGG i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20717218 42 + 189454096 ACTTTTTTTCTTCTGTTATTTAATGAATGGCCTATAGAAGGG i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16311320 42 + 178775436 actttttttcttctgttatttaatGAATGGCCTATAGAAGGG i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19800372 42 - 48547382 ACTTTTTTTCTTCTGTTATTTAATGAATGGCCTATAGAAGGG i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21152652 41 - 190850796 GC-TTTTTTCTTCTGTTATTTAATGAATGGACCATTGAATGG i calJac3.chr3 C 0 C 0 s canFam3.chr3 3736734 31 - 91889043 ----actcTATTCTTTTATTTAATGCAT---TTGTAGA---- i canFam3.chr3 I 1274 C 0 e mm10.chr5 49139734 716 + 151834684 I a score=4030876.000000 s hg38.chr4_KI270790v1_alt 33658 1137 + 220246 CATTACATTAGCATCAGGACACAATGACCATCTAAACA--------------TTTTTTAACAGTTCAC-----TAGAACTGTACACAGTTATTAGCCTGTT---CTTTGCTTGCAAATGCCTCAAGAAGCGAAATAGTGGT-ACGTCCTTT----------CCCCTGTGTTAAATTTGAGATCACAGAGGCAGGGCAAGCTGCATTAACCTGTCTGAGGTCACCCTCCAAGTCACTGCAATGGAGAAGCCAAATCATCAATGCAGAGAGCTGCTTTCTTCCGTAACTGTGATGTACTGAGTTCACTGAGCCATGCTGTATTTGTCATGCACATGAGTTCTG--AAAATCAATAAAATCTGTGAACCATCCCAC----------------AAAAATA-------AAATGCAGTGAAAAGAGTCTGCTTTGCTCCCTTCAATTACTCCAGCATGAATGGACCCAACAGCTGTGGTC-TTCAGTGGGACTTCCAGGGCAATAAAGTTTTTAGAAATATTGATT----TTCTTGATTTATCAAATTTTCTTGTTTGAGCTTTGCCTAATAAAACAT-CAAAGTTGAGCATGTGAAGCTGCATT-AAAGCATGATCTTCCTGGCAAGAAGAATATGGAATAAAATTGGTTGCATCTTTGGATATGAAATAG----------AAAAAAAATACCTGAATCATTTTCAACAAAACATATGCTCAAATACTGGTGGAGATAAAAACCAGTTCAGGTAGATTTCTTTGTCATGCTTGAAAAATACTTTTCTTCAAATACATATTAAATATATT--ACTATCTAGAGCATCTAAAGTGAGAGTCTCTTGTCACACATCTAGACAAAATTAGGATTCCTGTGACTCATGTCCCCAGTCATTCTACATTGGTTGTCAGAGTTCATATCTCAACTCCAGATTCAGGTCCAGTTTGCTGGTCCATCAGAGGCTGGA--AGCATGCTGTGCCAGCTGTGTCTGTAGACACAGCTGTGCGCTGTGAAAA-ATGCACACTCGGTTAACCCTGGAATGATTTTAGATCCTAAATATTGCAAAGGAAAGAGTATCTTTTGG-TTTTTTGTGCCTCAATATCCTATTGACATGAATGAATTTTGCTTGATAAATTTGTAAAGCCAACAGCCTTTCG---ACAAAAGGGGTGAGAAACATATGTGTGTTTTGTAATTGAGTAAAAATGGATTTTGAGAATAC s panTro4.chr4 21421220 1136 + 193495092 CATTACATTAGCATCAGGACACAATGACCATCTAAACA--------------TTTTTTAACAGTTCAC-----TAGAACTGTACACAGTTATTAGCCTGTT---CTTTGCTTGCAAATGCCTCAAGAAGCGAAATAGTGGT-ACATCCTTT----------CCCCTGTGTTAAATTTGGGATCACAGAGGCAGGGCAAGCTGCATTAACCTGTCTGAGGTCACCCTCCAAGTCACTGCAATGGAGAAGCCAAATCATCAATGCAGAGAGCTGCTTTCTTCCGTAACTGTGATGTACTGAGTTCATTGAGCCATGCTGTATTTGTCATGCACATGAGTTCTG--AAAATCAATAAAATCTGTGAACCATCCCAC----------------AAAAATA-------AAATGCAGTGAAAAGAGTCTGCTTTGCTCCCTTCAATTACTCCAGCATGAATGGACCCAACAGCTGTGGTC-TTCAGTGGGACTTCCAGGGCAATAAGGTTTTTAGAAATATTGATT----TTCTTGATTTATCAAATTTTCTTGTTTGAGCTTTGCCTAATAAAACGT-CAAAGTTGAGCATGTGAAGCTGCGTT-AAAGCATGATCTTCCTGGCAAGAAGAATATGGAATAAAATTGGATGCATCTTTGGATATGAAATAG-----------AAAAAAATACCTGAATCATTTTCAACAAAACATATGCTCAAATATTGGTGGAGATAAAAACCAGTTCAGGTAGATTTCTTTGTCATGCTTGAAAAATACTTTTCTTCAAATACATATTAAATATATT--ACTATCTAGAGCATCTAAAGTGAGAGTCTCTTGTCACACATCTAGACAAAATTAGGATTCCTGTGACTCATGTCCCCACTCTTTCTACATTGGTTGTCAGAGTTCATATCTCAACTCCAGATTCAGGTCCAGTTTGCTGGTCCATCAGAGGCTGGA--AGCATGCTGTGCCAGGTGTGTCTGTAGACACAGCTGTGCGCTGTGAAAA-ATGCATGCTCAGTTAACCCTGGAATGATTTTAGATCCTAAATATTGCAAAGGAAAGAGCATCTTTTGG-TTTTTTGTGCCTCAGTATCCTATTGACATGAATGAATTTTGCTTGATAAATTTGTAAAGCCAACAGCCTTTCA---ACAAAAGGGGTGAGAAACATATGTGTGTTTTGTAATTGAGTAAAAATGGATTTTGAGAATAC i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21597695 1135 + 198332218 CATTACATTAGCATCAGGATACAATTACCATCTAATCA--------------TTTTTTAACAGTTCAC-----TAGAACTGTACACAGTTATTAGCCTGTT---CGTTGCTTGCAAATGCCTCAAGGAGCGAAATAGTGGT-ACGTGCTTT----------CCCCTGTGTTAAATTTGGGATCACAGAGGCAGGGCAAGCTGCATTAACCTGTCTGAGGTCACTCTCCAAGTCATCGCAATGGAGAAGCCAAATCATCAATGCAGAGAGCTGC-TTCTTCCATAACTGTGATGTACTGAGTTCATTGAGCCATGCTGTATTTGTCATGCACATGAGTTCTG--AAAATCAATAAAATCTGTGAACCATCCCAC----------------AAAAATA-------AAATTCAGTGAAAAGAGTCTGCTTTTCTCCCTTCAATTACTCCAGCATGAATGGACCCAACAGCTGTGGTC-TTCAGTGGGACTTCCAGGGCAATAAGGTTTTTAGAAATATTGATT----TTCTTGATTTATTAAATTTTCTTGTTTGAGCTTTGCCTACTTAAATGT-CAAAGTTGAGCATGTGAAGCTGTGTT-AAAGCATGATCTTCCTGGCAATAAGAATATGGAATAAAACTGGATGCATCTTTGGATATGAAATAG----------AAAAAAAATACCTGAATCATTTTCAACAAAATATATGCTCAAATACTGGTGGAGATAAAAACCAGTTCAGGTAGATTTCTTTGTCATGCTTGAAAAATACTTTTCTTCAAATACATATTAAATATATT--ACTACCTAGAACATCTAAAGTGAGACTCTCTTGTCACACATCTAGACTAAATTAGGATCCCTGTGACTCATGTCCCCAGTCATTCTACA-TGGTTGTCAGAGTTCATATCTCAACTCCAGATTCAGGTCCAGTTTGCTGGTCCATCAGAGGCTGGA--AGCATGCTGTGCCAGGTGTGTGTGAAGACACAGCTGTGTGCTGTGAAAA-ATGCACGCTCAGTTAACCCTGGAATGATTTTAGATCCTAAATATTGCAAAGGAAAGAGTATCTTTTGG-TTTTTTGTGCCTCAGTATCCTATTGACATAAATGAATTTTGCTTGATAAATTTGTAAAGCCAACAGCCTTTCG---ACAAAAGGGGTGAGAAACATATGTGTATTTTGTAATTGAGTAAAAATGGATTTTGAGAGTAC i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20209592 1137 - 85365473 CATTACATTAGCATCAGGACACAATGACCATCTAATCA--------------TTTTTTAACAGTTCAC-----TAGAACTGTACACAGTTATCAGCCTGTTCTCCTTTGTTTGCAAATGCCTCAAGAAGCCAAATAGTGGT-AGGTACTTT----------CCCCTGTGTTAAATTTGGGATCACAGAGGCAAGGCAAGCTGCATTAACCTGTCTGAGGTCACCCTCCAAGTCACTGCAATGGAGAAGCCAAATCATCAATGCAGAGAGCTGCTTTCTTCCATAACTGTGATGTACTGAGTTCATTGAGCCATGCTGTATTTGTCATGCACATGAGTTCTG--AAAATCAATAAAATCTGTGAACCATCCCAC----------------AGAAATA-------AAATGCAGTGAAAAGGGTCTGCTTTGCTCCCTTCAATTACTCCAGCATGAATGGACCCAACAGCTGTGGTCTTTCAGTGGGACTTCCAGGGCAATGAGGTTTTTAGAAATACTGATT----TTCTTGATTTATCAAATTTTCTTGTTTGAGCTTTGCCTAATTAAATGT-CAAAGTTGAGCATGTGAAGCTGCGTT-AAAGCATGATCTTCCTGGCAATAAGAATATGGAACAAAATTGGATGCATCTTTGGATATGAAATAT-----------AAAAAAATACCTGAATCATTTTCAACAAAATATACGCTCAAATATTGATGGAGATAAAAACCAGTTCAGGTAGATTTCTTTGTCATGCTTGAAAAATACTTTTCTTCAAATACATATTAAATATATT--ACTATCTAGAGCATCTAAAGCGAGAGTGTTT--TCACACATCTAAACAAAATTAGGATCCCTGTGACTCATGGCCCCAGTCATTCTACA-TGGTTGTCAGAGTTCATATCTCAACTCCAGATTCAGGTCCAGTTTGCTGGTCCATCAGAGGCTGGA--AGCATGCTGTGCCAGGTGTGTCTGTAGCCACAGCTGTGTGCTGTGAAAA-ATGCATGCTCAGTCAACCCTGGAATGATTTTAGATCCTAAATACTGCAAAGGAAAGAGTATCTTTTGGTTTTTTTGTGCCTCAGTATCCTATTGACATAAATGAATTTTGA-CGATAAATTTGTAAAGCCAACAGCCTTTCA---ACAAAAGGGGCGAGAAACATATGTGTATTTTGTAATTGAGTAAAAATGGATTTTGAGGATAC i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16674892 1142 + 184069350 CATTACATTAGCATCAGGACACAATGACCATCTAAACA--------------TTTTTTAACAGTTCAC-----TAGAAGTGTACACAGTTATTAGCCTGTTCTCCATTGCTTGCAAATGCCTCAAGAAGCCAGATAGTGGT-AGGCGCTTT----------CCTCTGTGTTAAATCTGGTATCACAGAGGCAGGGCAAGCGGCATTAACCTGTCTGAGGTCACCCTCCAAGTCAGTGCAATAGAGGAGCCAAATCATCAATGCAGAGGGCTGCTTTCTTCCATAACTGTGATGTACTGAGTTCATTGAGCCATGCTGTATTTGTCATGCACATGAGTTCTG--AAAATCAATAAAATCTGTGAACCATACCAC----------------AAAAATA-------AAATGCAGTGAAAAGAGTCTGCTTTGCTCCCTTCAATTACTCCAGCATGAATGGACCCAACAGCTGTGGTC-TTCAGTGGTACTTCCAGGACAATGAGGTTTTTGGATATATTGATT----TTCTTGATTTATCAAATGTTCTTGTTTGAACTTTGCCTAATTAAACGA-CTAAGTTGAGCATGCGAAGCTGCGTG-AAAGCATGATCTTCCTGGCAATAAGAATACGGAATAAAGTTGGATGCATCTTTGGATATGAAATAG------AAAAAAAAAAGATACCTGAATCATTTTCAACAAAATATATGCTCAAATATTGGTGGAGATAAAAACCAGTTCAGGTAGATTTCTTTGTCATGGTTGAAAAATACTTTTCTTCAAATACATATTAAATATATT--ATTATCTAGAGCATCTAAACTGAGAGTCTTTTGTCACATATCTAGGCAAAATTAGGATCCCTGTGACTCATGTCCCCAGTCATTCTACA-TGGTTGTCAGAGTTCATATCTCAACTCCAGATTCAGGTCCAGTTTGCTGGTCCATCAGAGGCTGGA--AGCACGCTGTGCCAGGTGTGTCTGTAGACACAGCTGTGTGCTGTAAAAA-ATGCATGCTCAGTTAACCTTGGAATGATTTTAGATCCTAAATATTGCAAAGGATAGAGTATCTTTTG--CTTTTTGTGCCTGAGTATCCTATTGACAAAAACGAATGTTGCTTGATAAATTTGTAAAGCTAACAGACTTTGG---ACAAAAGGGGTGAGAAACATGTGTGTATTTTGTAATTGAGTAAAAGTGGATTTTGAGAATAC i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20717260 1142 + 189454096 CATTACATTAGCATCAGGACACAATGACCATCTAAACA--------------TTTTTTAACAGTTCAC-----TAGAAGTGTACACAGTTATTAGCCTGTTCTCCATTGCTTGCAAATGCCTCAAGAAGCCAAATAGTGGT-AGGCGCTTT----------CCTCTGTGTTAAATCTGGGATCACAGAGGCAGGGCAAGCGGCATTAACCTGTCTGAGGTCACCCTCCAAGTCAGTGCAATAGAGGAGCCAAATCATCAATGCAGAGGGCTGCTTTCTTCCATAACTGTGATGTACTGAGTTCATTGAGCCATGCTGTATTTGTCATGCACATGAGTTCTG--AAAATCAATAAAATCTGTGAACCATACCAC----------------AAAAATA-------AAATGCAGTGAAAAGAGTCTGCTTTGCTCCCTTCAATTACTCCAGCATGAATGGACCCAACAGCTGTGGTC-TTCAGTGGTACTTCCAGGACAATGAGGTTTTTGGATATATTGATT----TTCTTGATTTATCAAATGTTCTTGTTTGAACTTTGCCTAATTAAATGA-CTAAGTTGAGCATGAGAAGCTGCGTG-AAAGCATGATCTTCCTGGCAATAAGAATACGGAATAAAGTTGGATGCATCTTTGGATATGAAATAG------AAAAAAAAAAGATACCTGAATCATTTTCAACAAAATATACGCTCAAATATTGGTGGAGATAAAAACCAGTTCAGGTAGATTTCTTTGTCATGGTTGAAAAATACTTTTCTTCAAATACATATTAAATATATT--ATTATCTAGAGCATCTAAACTGAGAGTCTTTTGTCACATATCTAGGCAAAATTAGGATCCCTGTGACTCATGTCCCCAGTCATTCTACA-TGGTTGTCAGAGTTCATATCTCAACTCCAGATTCAGGTCCAGTTTGCTGGTCCATCAGAGGCTGGA--AGCACGCTGTGCCAGGTGTGTCTGTAGACACAGCTGTGTGCTGTAAAAA-ATGCATGTTCAGTTAACCTTGGAATGATTTTAGATCCTAAATATTGCAAAGGATAGAGTATCTTTTG--CTTTTTGTGCCTGAGTATCCTATTGACAAAAATGAATGTTGCTTGATAAATTTGTAAAGCTAACAGACTTTGG---ACAAAAGGGGTGAGAAACATGTGTGTATTTTGTAATTGAGTAAAAGTGGATTTTGAGAATAC i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16311362 1141 + 178775436 CATTACATTAGCATCAGGACACAATGACcatctaaaca--------------ttttttaacagtTCAC-----TAGAAGTGTACATAGTTATTAGCCTGTTCTCCTTTGCTTGCAAATGCCCCAAGAAGCCAAATAGTGGT-AGGTGCTTT----------CCTCTGTGTTAAATCTGGGATCACAGAGGCAGGGCAAGCTGCATTAACCTGTCTGAGGTCACCCTCCAAGTCAGTGCAATGGAGGAGCCAAATCATCAATGCAGAGGGCTGCTTTCTTCCATAACTGTGATGTACTGAGTTCATTGAGCCATGCTGTATTTGTCATGCACATGAGTTCTG--AAAATC---AAAATCTGTGAACcatgccac----------------aaaaata-------aaatgcagtgaaAAGAGTCTGCTTTGCTCCCTTCAATTACTCCAGCATGAATGGACCCAACAGCTGTGGTC-TTCAGTGGTACTTCCAGGGCAATTCGATTTTTGGAAATATTGATT----TTCTTGATTTATCAAATGTTCTTGTTTGAACTTTGCCTAATTAAACGT-CAAAGTTGAGCATGCGAAGCTGCGTT-AAAGCATGATCTTCCTGGCAGTAAGAATACGGAATAAAGTTGGATGCATCTTTggatatgaaatag----aaaaaaaaaaaagatacctgaatcattttcaacaaaatatacGCTCAAATATTGGTGGAGATAAAAGCCAGTTCAGGTAGATTTCTTTGTCATGcttgaaaaatacttttcttcaaatacatattaaatatatt--attatctaGAGCATCTAAACTGAGAGTCTTTTGTCACATATCTAGGCAAAATTAGGATCCCTGTGACTCATTTCCCCAGTCATTCTACA-TGGTTGTCAGAGTTCATATCTCAACTCCAGATTCAGGTCCAGTTTGCTGGTCCATCAGAGGCTGGA--AGCACGCTGTGCCAGGTGTGTCTGTAGACACAGCTGTGTGCTGTAAAAA-ATGCATGCTCAGTTAACCTTGGAATGATTTTAGATCCTAAATATTGCAAAGGATAGAGTATCTTTTG--CTTTTTGTGCTTGAGTATCCTATTGACAAAAATGAATGTTGCTTGATAAATTTGTAAAGCTAACAGACTTTGG---ACAAAAGGGGTGAGAAACATGTGTGTATTTTGTAATTGAGTAAAAGTGGATTTTGAGAATAC i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19800414 1146 - 48547382 CATTACATTAGCATCAGGACACAATGACCATCTAAACA--------------TTTTTTAACAGTTCAC-----TAGAAGTGTACACAGTTATTAGCCTGTTGTCCACTGCTTGCAAATGCCTCAAGAAGCCAAATAGTGGT-AGGCGCTTT----------CCTCTGTGTTAAATCTGGGATCACAGAGGCAGGGCAAGCTGCATTAACCTGTCTGAGGTCACCCTCCAAGTCAGTGCAATGGAGGAGCCAAATCATCAATGCAGAGGGCTGCTTTCTTCCATAACTGTGATGTACTGAGTTCATTGAGCCATGCCGTATTTGTCATGCACATGAGTTCTG--AAAATCAATAAAATCTGTGAACCATACCAC----------------AACAATA-------AAATGCAGTGAAAAGAGTCTGCTTTGCTCCCTTCAATTACTCCAGCATGAATGGACCCAACAGCTGTGGTC-TTCAGTGGTACTTCCAGGGCAATGAGGTTTTTGGAAATACTGATT----TTCTTGATTTATCAAATGTTCTTGTTTGAACTTTGCCTAATTAAACGT-CAAAGTTGAGCATGCGAAGCTGCATT-AAAGCATGATCTTCCTGGCAATAAGAATACGGAATAAAGTTGGATGCATCTTTGGATATGaaatagaaaaaaaaaaaaaaaaGATACCTGAATCATTTTCAACAAAATATACGCTCAAATATTGGTGTAGATAAAAGCCAGTTCAGGTAGATTTCTTTGTCATGCTTGAAAAATACTTTTCTTCAAATACATATTAAATATATT--ATTATCTAGAGCATCTAAACTGAGAGTCTTTTGTCACATATCTAGGCAAAATTAGGATCCCTGTGACTCATGTCCCCAGTCATTCTACA-TGGTTGTCAGAGTTCATATCTCAACTCCAGATTCAGGTCCAGTTTGCTGGTCCATCAGAGGCTGGA--AGCACGCTGTGCCAGGTGTGTCTGTAGACACAGCTGTGTGCTGTAAAAA-ATGCATGCTCAGTTAACCTTGGAATGATTTTAGATCCTAAATATTGCAAAGGATAGAGTATCTTTTG--CTTTTTGTGCTTGAGTATCCTATTGACAAAAATGAATGTTGCTTGATAAATTTGTAAAGCTAACAGACTTTGG---ACAAAAGGGGTGAGAAAC--GTGTGTATTTTGTAATTGAGCAAAAGTGGATTTTGAGAATAC i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21152693 1135 - 190850796 CATTACATTTGCATCAGGACACAAGGACCATCTAAACA--------------ATTTTTAACAGTTCGC-----TAGCAGGGCACACGG-TATTAGTCTGTTGTTCTTTGTTTGCAAATGCCTCAGGAAGCTAAAGAGTGGTAAGGTGTTTT----------CCCCTGGGTTAAATTTGGGATCACAGAGGCAGAGCAAGCTGCATCAATCTGTCTGAGGCCACCCTCCAAGTCAATGCAATGGAGCAGCCAAATCGTCAATGCAGGGAGCTGCTTTCTTCCCTATCTGTGATGTACTGAGTTCATTGAGCCATACTGTATTTGTCATGCACATGAGTTCTG--AAAAGCAATAAAATCTGTGAACCATATCAC----------------AAAAATA-------AAATGCAGTAAAAAGAGTTTGCTTTGCTCCCTTCGATTACTCCAGCATGAATGGACCCAACAGCTGTGGTC-TTCAGTGATACTTCCAGGGCAACGAGGTTTTTGGAAATATCGATT----TTCTTGATTTATCTAATTTTCTTGTTTGAGCTTTGCCTAATTAAACCT-CAAAGTTGAGCATGTGAAGCTGAGTG-AAAGCATGATCTTCCTGGCAATAAGAACATGAAATAAAATTGGATGCATCCTAGGATATGAAA-------------AAAAAAGATACCTGAATCATTTTCTATAAAGTATATGCTCAAATATTGGTGAAGATAAAAATGATTTCAGGTAGATTTCTTTGTCGTGCATGAAAAACACTTTTCTTCAAATACATATTAAGTGTATC--ATTATCTAGAGCAACTGAACTGAGCGTCCTCTGTTGCACATCTAGACAAAATTAGGATCCCTGTGACTCATGTTCTCAGTCATTCTACA-TGGTTGTCAGAGTTCATATCTCAACTCCAGATTCAAGTCCAGTTTGCTGGTCCATCAGAGGCTGGA--AGCACACTGTGCCAGGTGTGTGTGTAGACACAGCTGTGTGCTGTCAAAATATGCATGCTCAGTTAACCCTCGAATGATTTTAGAGCCTAGGTATTGCAAATGAAAGAGTATCTTTTGG-TTTGTTGTGCCTCGGTATCCTATTGACATAAATGAATTTTGCTTGATAAATTTGTAAAGCTAACAGACTTTTG---ACAAAAAGGGTGAGAAAC--ATGTGAATTTCATAATTGAGTAAAAATGGATTTTAAGAATAC i calJac3.chr3 C 0 C 0 s mm10.chr5 49140450 1120 + 151834684 CATAAACTTACCATTAGGACACATCATCTACTTAAATA--------------TTTTGTAACAGTTTTTAGATATAGAATCTTAGACAAAAATTGTCTTTTCCTTCTTGGTTTAC-CATGCTTCAA------------TTGT-AGGTGACTTTTAGGCATTGTTACTTTGTTACATCTGAAACTAGCAGGACAGAGGAATCTGAACTGACCTCTTAAAAGCAATGTCCCCAAGTAGTGCAACAGTGTAACTAAATCTACTGTGCAGAGAGTAGATTACTCCTACTCCTGGATTGTACTGACTTTATAAAGCTGTGTAATACCTGTCATGCTCATGAGTTCTG-AAAAATCAATTAACCCTGTTGATCATGTCACTAAACCGAATGAAGGTACAAAGA-------ATAAACAATGAAAA---TCTCCCTTATAACCCTTACTTATTTCACCATCAAGGGG-CCAATAGGTGTTATT-GTT-GTGATACTTTCAGTGCAATGGAGTCTTTGGAATAAGTTCTTTTAATTCTTGACCCATCAATCATTTCTGTTTGGACACT-TTTAAATGTAAAT-CCCAGTTGAGTAATTGAAGCTGTGTTAAAAGCATGATAATTCTGTCAATAAAAA-------------------CATCATTGAAGTAGAAATGG-----------GAAAAGTTACCTCACCCATCTTAAACCATGTATACTGTCATGTATATGTAGGTATAGAAAC-ATTTAAGATAAATTTTACTGTCACAGTTG-AAAATATTTTCCTTCAAATAAATTCTGCATGCATC--TTTCTCTAGAACTGCTAAACAG-----CCCTTGTAATATATCATGATGTGAATAGATTCAATTTGACCAGAAATTCCATTTACTTCCTA-TGGTTGTCAGAGTTCATATCTCAATTCCATATCTAGGTCCAGTTAAC----CCTCTATAGATTATATTAGCAAG-TGCACCAGGTGTGTC-ATAGACACAGCTGAGTGCCATTAAAA-ATGTGTATTCAATTAATCCTGGAAGGATTTTAG----CAATCAGTGTAAAAGGAAAAATATCCTTTGC-CTTGGTCTGTCTTGATATACTACTGA----AGTGAATTTTGTTGGGTAAATAAATAATGATACTAGGCTTTTATGTGTTTAAGGGG-AAGAACCTCATATAGTCCTTATTATTGAGAGAAAATGACATGTGAGAGTAC i mm10.chr5 I 716 I 472 s canFam3.chr3 3736765 1098 - 91889043 CGT----TTTGTACCAAAATACA------ATCTGAATGTTTGTTTTTTTTTTTTTTCTAACATTTCAC-----CAGAATTGCTCTCAGATATTGGCCTATTATCCTTGGCTTGCAAATGCCTCAAGAAGCAGA----TGCT-TGGTGTTTT----------GCA-TACATT--ATCTGAGATAAGGGAGGCAGAGTGAGAGGCATTAACCCACCCGAGGCCATGTACCAAATCACTGCCACAGAAGAGCCAAATCTATGATCCGAGGAGCTGCTTTCTTCCATGTC-----TGTACTGAGTTCACTGAGCTGTCC----TCTGTCATG--CATGAGTTCTGAAAAAATCGCTAAAATCTCTGAAGCATACCTC----------------ACAAGCATACACATAGAGGCAGGGAAAAGTGTCTGCT-----CCCTTCAATTACTCTGGCATGAATGGACCTAACAGCTATGGCC-TCCAGTGAGATTTCTATGGCAATGGGATCTTTGGAAACATTCAAT----TTTTTGATGTATCTAATGCTCCTAATTGGACTCTCTCTAATGGAAGCTGCAAAGTTGAATTTGCACAGTCGTAGT-AAAGCATGATAGTCACGGGAATAAGAACACAGAACCAAGGCAGGTGCAGCCCACAACAGGAAAAGT----------------------TGAACCAT-TCAGACAACATATATTTTCAAATATGGGTAGGCATAAGAAATACATCAG---GACTTCTCTGCTATGTGTGGTAAATG-TTTTCTTTTAATAAATATTGAATGTATCCAGTTAGCATGAGTATCTAAACAGAGAGGTTTCCATTATATATTTAGACAAAAATAGGATCACTGTGACCAATGTTCCGTGTTATTCT-CA-CAGTTGTCAGAGTTCATATCTCAATTCCAGATCCAGATCCAGTTAACTGGTCCATCAGAG-CTGGA--AGGGCAATGGGCCAGGTGTGTCTGTGGACACAGCTGTATGCTGCAAAAAAATGCATGCCTAGCTAACCCTGAAATGATTTCAGATCCCAAATATCACAAGGAAATGACTATCTTTTTGATTTGTTGTTTCTCAATACACGATGGAGGTAAATAAATTTTGCTTGGCAAATCTGTAAAGCCAACATATTTTTT-------AAAGGATGAGAAACACACATGTAC-------------AAGAATAGATTTGGAGAACAC i canFam3.chr3 C 0 C 0 a score=1536234.000000 s hg38.chr4_KI270790v1_alt 34795 482 + 220246 TATGGAATATTCATAGATTATTGGCTTTCGAGTTGGAAGAGCAATTTAGGGATAATTATAACAATCAT--GATAATTGGTGACCATTT-----TTAAATATGGTTCTGCCATTGTATGATGTGTTTTATcaacaaatatattaggtacatgattcagttaacactacatccaatttaaagaagaggacaatccattctagaggagttaaatgacttg-ccccattcccacagttGATTACTTTTCAGAGATGAACAACAAAGTCAATGCTTCTATCTTCTTGGTTTACAAAGGAATT---GCAAACCAAATTTATGAGAGTGATTAGCCTTCTCAAGGATGACATGGGACTTTGTCTTTTAACCAGATGATTGCAGAAGTGATTGGCCATTATTGCTTCCTCAAACTTCTAGTTACCTTGAAATAACTCTATAGGACAATTTATTGCTAAGAATCTTCTATGGAATACTACTTCAAAAATACATCAGAggcca s panTro4.chr4 21422356 482 + 193495092 TATGAAATATTCATAGATTATTGGCTTTCGAGTTGGAAGAGCAATTTAGGGATAATTATAATAATCAT--GATAATTGGTGACCATTT-----TTAAATATGGTTCTGCCATTGTATGATGTGTTTTATcaacaaatatattaggtacatgattcagttaacactacatccaatttaaagaagaggacaatccattctagaggagttaaatgacttg-ccccattcccacagttGATTACTTTTCAGAGATGAACAACAAAGTCAATGCTTCTGTCTTCTTGGTTTACAAAGGAATT---GCAAACCAAATTTATGAGAGTGATCAGCCTTCTCAAGGATGGCATGGGACTTTGTCTTTTAACCAGATGATTGCAGAAGTGATTGGCCATTATTGCTTCCTCAAACTTCTAGTTACCTTGAAATAACTCTATAGGACAATTTATTGCTAAGAATCTTCTATGGAATACTACTTCAAAAATACATCAGAggcca i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21598830 482 + 198332218 TATGGAATATTCATAGATTATTGGCTTTTGAGTTGGAAGAGCAATTTGGGGATAATTATAATAATGAC--GATAATTAGTGACCATTT-----TTAAATATGGTTCTGTCATTGTATGATGTGTTTTATcaacaaatatattaggtacatgattcagttatcactacatccaatttaaagaagaggacaatccattctagaggagttaaatgacttg-ccccattcccacagttGATTACTTTTCAGAGATGAACAACAAAGTCAATGCTTCTGTCTTCTTGGTTTACAAAGGAATT---GCAAACCAAATTTATGAGAGTGATTAGCCTTCTCAAGGATGAGATGGGACTTTGTCTTTTAACCAGATGATTGCAGAAGTGATTGGCCATTATTGCTTCCTCAAACTTCCAGTTACCTTGAAATAACTCTATAGGACAATTTATTGCTAAGAATCTTCTATGGAATACTACTTCAAAAATACATCAGAggcca i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20210729 481 - 85365473 TATGGAATATTCATAGATCATTGGTTTTCGAGTTGGAAGAGCAATTTAGGGAAAATTACAATAATGAT--GATAATTGGTGATCATTT-----TTAAATATGGTTCTGTCATTGTATGATGTGTTTTATcaacaaatatattaggtacatgattcagttatcactacatctaatttaaagaagaggacaatccattctagaggagttaaatgacttg-ccccattcccacagttGATTACTTTTCAGAGATGAACAACAAAGTCAATGCTTCTGTCTTCTTGG-TTACAAAGGAATT---GCAAACCATATTTATGAGAGTGATTAGCCTTCTCAAGGATGACATGGGACTTTGTCTTTTAACCAGATGATTGCAGAAGTGATTGGCCATTATTGCTTCCTCAAACTTCCAGTTACCTTGAAATAACTCTATAGGACAATTTATTGCTAAGAATCTTCTATGGAATACTACCTCAAAAATACATCAGAggcca i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16676034 478 + 184069350 TATGGACTATTCATAGATTATTGGCTTTCAAGTTGGAAGAGTAGTTTAGGGATAATTACAATAATGAT--GATGA----TGACAATGT-----TTAAATATGGTTCTTTCATTGCATGATGTGTTTTATcaacaaatatatcaggtacatgattcagttatcactacatccaatttagagatgaggacaatccattctagaggagttaaatgacttgcccccatttccacagttgattacatttcaaagatgaaccataaagtcaatgcttctgtcttctcagCTTACAAAGGAATT---GCAAAACAAACTTATGAGAGTGATTAGCCTTCTTGAAGACGAGATGGGACTTTTTATTTTAACCAGATGATTGCAGAAGTGATTGGCCATTATTGCTTCTTCAGACTTCCAGTTATCTTGAAATAACTCTATC-GACAGTTTATTGCTAAGAGTCTTCTATGGAACACTACTTCAAAAATACATCAGAgacca i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20718402 478 + 189454096 TATGGACTATTCATAGATTATTGGCTTTCAAGTTAGAAGAGTAGTTTAGGGATAATTACAATAATGAT--GATGA----TGACAATGT-----TTAAATATGGTTCTTTCATTGCATGATGTGTTTTATcaacaaatatatcaggtacatgattcagttatcactacatccaatttagagatgaggacaatccattctagaggagttaaatgacttgcccccatttccacagttgattacatttcaaagatgaaccataaagtcaatgcttctgtcttctcagCTTACAAAGGAATT---GCAAAACAAACTTATGAGAGTGATTAGCCTTCTCGAAGATGAGATGGGACTTTTTATTTTAACCAGATGATTGCAGAAGTGATTGGCCATTATTGCTTCTTCAGACTTTCAGTTATCTTGAAATAACTCTATC-GACAGTTTATTGCTAAGAGTCTTCTATGGAACACTACTTCAAAAATACATCAGAgacca i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16312503 478 + 178775436 TATGGACTATTCATAGATTATTAGCTTTCAAGTTGGAAGAGTAGTTTAGGGATATatacaataatgat--gatga----tgacaatgt-----tTAAATATGGTTCTTTCATTGCATGATGTGTTTTATCAACAAATATATCAGGTACATGATTCAGTTATCACTACATTCAATTTAGAGATGAGGACAATCCATTCTAGAggagttaaatgacttgcccccATTTCCACAgttgattacatttcaaagatgAACCATAAAGTCAATGCTTCTGTCTTCTCAGCTTACAAAGGAATT---GCAAACCAAACTTATGAGAGTGATTAGCCTTCTTGAAGATGAGATGggactttttattttaaccagATGATTGCAGAAGTGATTGGCCATTATTGCTTCTTCAAACTTCCAGTTATCTTGAAATAACTCTATC-GACAGTTTATTGCTAAGAGTCTTCTATGGAACACTACTTCAAAAATACATCAGagacca i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19801560 475 - 48547382 TGTGGACTATTCATAGATTATTGGCTTTCAAGTTGGAAGAGTAGTTTAGGGATAATTACAATA---AT--GATGA----TGACAATTT-----TTAAATATGGTTCTTTCATTGCAGGATGTGCTTTATcaacaaatatatcaggtacatgattcagttatcactacatccaatttagagatgaggacaatccattctagaggagttaaatgacttgcccccatttccacagttgattacatgtcaaagatgaaccataaagtcaatgcttccatcttctcagCTTACAAAGGAATT---GCAAACCAAACTTATGAGAGTGATTAGCCTTCTTGAAGATGAGATGGGACTTTTTCTTTTAACCAGATGATTGCAGAAGTGATTGGCCATTATTGCTTCTTCAAACTTCCAGTTATCTTGAAATAACTCTATC-GACAATTTATTGCTAAGAGTCTTCTATGGAACACTACTTCAaaaatacatcagagacca i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21153828 467 - 190850796 TATGGAATATTCATAGATTATTGGTTTTTAAGTTGGAAGGACAATTTAGAGATAATTACAATAATAAT----TGA----TAATCATTT-----TTAAATATAGTTCTTTCATTGTATGATGTGTTTTATTAATAAAT-----aggtacatggttcagttatcactacattcaatttagagattaggacaacccattctagaggagttaaatgacttgcccccattcccacagttgattacatttcagagatgaaccacaaagtcagtgcttctgtttccTTGGTTTACAAAGGAATC-------ACCAAACTTATGAGAGTGATTAGCCTTCTCGAGGATGAGGT-GCACTTTTTCTTTTAACCAGATGATTGCAGAAGTGATTGGCCATTATTGCTTCCTCAAATTTCCAGTTACCTTGAAATAATTCTATAGGACAGTTTATTGCAAAGAGTTTTCTATGGAATACTAATTCAAAAATACATCAGAAgcca i calJac3.chr3 C 0 C 0 s canFam3.chr3 3737863 479 - 91889043 TGTGGAC-GCTCATAGATTATTGGCTTTCAGGTTGG-AGAGCCTTAGAAAAATAATTACAATGATGCTGAGATGACTG-CAATTATTTTTTGCTTAGTTTTTTTTTTTTCATTTTATAAAGTGTTTTATcaacaaatatgttaattatatgttgcggctattactatatccactttagagattgggacaatccagttgagaggagttaaatgacttgccctggttcccacaattta-tatgtatcagagatgggacacggactcaagtcttttgtctccT-GGTTGACATGGGAATAAAGGCAAACC----TCCTGAGATTGGCTAGCTTTCTCATGGAAGAGATGGCGTGTTTTATTTCTCCCA---GATTTCAGGAATGGTT-GCCATTTCTGCTTTCTCAAACTGCCAGTCACCTTGAAATAACTCTATTTGGCATTTTA-TGCCaagggtcttccatgggacactaattctacagtatgtcagtagaca i canFam3.chr3 C 0 C 0 e mm10.chr5 49141570 472 + 151834684 I a score=318941.000000 s hg38.chr4_KI270790v1_alt 35277 110 + 220246 ggcattgtggctcatgcctgaaatcccagcactttgggaagctgaggcaggcagatcacctgaggtcaggagttccagacctgcctggccaacatggtgaaaccc---catct s panTro4.chr4 21422838 110 + 193495092 ggcattgtggctcacgcctgacatcccagcactttgggaagctgaggcgggcagatcacctgaggtcaggagttccagacccgcctggccaacatggtgaaaccc---catct i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21599312 110 + 198332218 ggcattgtggctcacgcctgaaatcccagcactttgggaagccgaggtgggcagatcacctgaggtcaggagttccagagccaccaggccaacatggtgaaaccc---catct i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20211210 113 - 85365473 ggcattgtggctcacgcctgaaatcccagcactttgggaagccaaggcgggcagatcacctgaggtcaggagttccagacccgcctggccaacatggtgaaaccccatcatct i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16676512 110 + 184069350 ggcactgtggttcacgcctgaaatcccagcactttgggaggccgaggcgggtggatcacctaaggtcaggagttcgcgaccagcctggccaacatggtgaaaccc---catct i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20718880 110 + 189454096 ggcactgtggttcacgcctgaaatcccagcactttgggaggccgaggcaggtggatcacctaaggtcaggagttcgcgaccagcctggccaacatggtgaaaccc---catct i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16312981 110 + 178775436 ggcactgtggttcacgcctgaaatcccagcactttgggaggccgaggcaggtggatcacctgaggtcaggagttcgcgaccagcctggccaacatggtgaaaccc---catct i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19802035 110 - 48547382 ggcactgtggttcacacctgaaatcccagcactttgggaggccgaggcgggtggatcacttgaggtcaggagttcgcaaccagcctggccaacatggtgaaaccc---catct i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21154295 109 - 190850796 ggcacggtggctcatgcctgtaatcccagcacttttgga-gccgaggtgggcagatcacctaagatcaggagttcaagaccagcctgaccaacatggtgaaaccc---tatct i calJac3.chr3 C 0 C 0 e mm10.chr5 49141570 472 + 151834684 I e canFam3.chr3 3738342 0 - 91889043 C a score=387831.000000 s hg38.chr4_KI270790v1_alt 35387 153 + 220246 ttactaaaaattct----aaaattagccaagcatagtggcaggtgcctgtaatcccagctactcaggaggctgaggcaggaaaatcacttgaacccgggagatagaggctgtagtgagctgagattacgccactgcactccagcctgatcaacaaag s panTro4.chr4 21422948 153 + 193495092 ttactaaaaattct----aaaattagccaagcatagtggcaggtgcctgtaatcccagctactcaggaggctgaggcaggaaaatcacttgaaccggggagatagaggctgtagtgagctgagattacgccactgcactccagcctgatcaacaaag i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21599422 153 + 198332218 ctactaaaaatact----aaaattagccaagcatagtggcaggtgcctgtaatcccaggtactcgggaggctgaggcaggaaaatcacttgaaccctggagatagaggctgtagtgagctgagattgcgccactgcactccagcctggtcaacaaag i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20211323 152 - 85365473 ctactaaaaatact----aaaatcagccaagcatagtggcaggt-cctgtaatcccagctactcgggaggatgaggcaggaaaatcacttgaacccaggagatagaggctgtagtgagctgagattgcaccactgcactccagcctggtcaacaaag i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16676622 152 + 184069350 ctaataagaatact----aaaattagctggatgtagt-tgaggtgcgtgtaatctcagctactcaggaggctgaggcaggagaatcacttgaaccccagaggtggaggctgcagtgagctgagatcatgccactgcactccagcctgggcaacaggg i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20718990 152 + 189454096 ctaataagaatact----aaaattagctggatgtagt-gcaggtgcgtgtaatctcagctactcaggaggctgaggcaggagaatcacttgaaccccggaggtggaggctgcagtgagctgagatcatgccactgcactccagcctgggcaacaggg i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16313091 152 + 178775436 ctaataagaatact----aaaattagccggatgtagt-GCAGgtgcgtgtaatctcagctactcaggaggctgaggcaggagaatcacttgaaccccggaggtagaggctgcagtgagctgagatcatgccactgcactccagcctgggcaacaggg i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19802145 152 - 48547382 ctaataagaatact----aaaattagccggatgtagt-gcaggtgcgtgtaatctcagctactcaggaggctgaggcaggagaatcacttgaaccccggaggtggaggctgcagtgagctgagatcatgccactgcactccagcctgggcaacaggg i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21154404 147 - 190850796 ctaccaacaacaca----aaaattaatcaggcatagtggcatgtgcctataatcccagctactcaggaggctgaggcagtagaatcacttgaacctaggagatggaggcttcagtgagctgagattg------tgcactccagcctgggtaacagag i calJac3.chr3 C 0 C 0 s canFam3.chr3 3738342 58 - 91889043 ctactcaaaacaatattaaaaacttgtcaaggacaat----------tctggtttcagctac-----------------------------------------------------------------------------------------acaaag i canFam3.chr3 C 0 C 0 e mm10.chr5 49141570 472 + 151834684 I a score=252874.000000 s hg38.chr4_KI270790v1_alt 35540 112 + 220246 caagactccatctcagaa---------------------a----------aaaaaaaaaa-------aaaaaaaaCCAGAAAACAAAAATGCATCAGTAGACGTTACTTAAAGCTATATAAAAATGTTGTTAAAgaaaatgctgagttaa s panTro4.chr4 21423101 117 + 193495092 caagactccatctcaaaa---------------------a-----aaaataaaaaataaa-------aaaaaaaaaCAGAAAACAAAAATGCATCAGTAGACGTTACTTAAAGCTATATAAAAATGTTGTTAAAgaaaatgctgagttaa i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21599575 122 + 198332218 taagactccatctcaaaa---------------------aaaacaaaacaaaacaaaaca-------aaacaaaaacagaaaacaaaaaTGCATCAGTAGACATTACTTAAAACTATATAAAAATGTTGTTAAAgaaaatgctcagttaa i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20211475 116 - 85365473 caagactccatctcaaaa---------------------a------aaaaaaaaaaaaaa-------acagaaaaCAAAAATGCAAAAATGCATCAGTAGACATTACTTAAAACTATATAAAAATGTTGTTACAgaaaatgctgagttca i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16676774 145 + 184069350 caagactccatcaaaaaacaaaaaacaaaaaaca-----aaaacaaaACAAAACAAAAAAACACACACAAAAAAAACGAAAAACAAAAATGCATCAGTAGACATTACTTAAAACTATATAAAAATGTTGTTAAAGAAAATGCTGAGCTAA i rheMac3.chr5 C 0 I 34 s macFas5.chr5 20719142 141 + 189454096 caagactccatcaaaaaacaaaaaacaaaaaaca-----aaaacaaagcaaaacaaaaaa----acacaaaaaaaacgaaaaacaaaaaTGCATCAGTAGACATTACTTAAAACTATATAAAAATGTTGTTAAAGAAAATGCTGAGCTAA i macFas5.chr5 C 0 I 16 s papAnu2.chr5 16313243 150 + 178775436 caagactccatcaaaaaataaaaaacaaaaaacaaaaccaaaacaaaacaaaacaaaaaaacacacacaaaaaaaacgaaaaacaaaaatgcatcaGTAGACATTacttaaaactatataaaaatgttGTTAAAGAAAATGCTGAGCTAA i papAnu2.chr5 C 0 I 16 s chlSab2.chr27 19802297 141 - 48547382 cgagactccatcaaaaaacaaaaaacaaaaaaca-----aaaacaaaacaaaacaaaaca----aaaacaaaaaaatgaaaaacaaaaaTGCATCAGTAGACATTACTTAAAACTATATAAAACTGTTGTTAAAGAAAATGCTGAGCTAA i chlSab2.chr27 C 0 I 34 s calJac3.chr3 21154551 98 - 190850796 tgagactgtctcaTAACA---------------------A---CCCAACAAAACACCAAA-------------------------AAAAACCATCAGTAAATATTACTTAAAACTACATAAGAA---TGTTAAAgaaaatgctgagctaa i calJac3.chr3 C 0 C 0 e mm10.chr5 49141570 472 + 151834684 I e canFam3.chr3 3738400 0 - 91889043 C a score=9432.000000 s hg38.chr4_KI270790v1_alt 35652 6 + 220246 actaaa s panTro4.chr4 21423218 6 + 193495092 actaaa i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21599697 6 + 198332218 attaaa i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20211591 6 - 85365473 actaaa i nomLeu3.chr20 C 0 C 0 s macFas5.chr5 20719299 6 + 189454096 GCTAAA i macFas5.chr5 I 16 C 0 s papAnu2.chr5 16313409 6 + 178775436 GCTAAa i papAnu2.chr5 I 16 C 0 s calJac3.chr3 21154649 6 - 190850796 gctaaa i calJac3.chr3 C 0 C 0 e mm10.chr5 49141570 472 + 151834684 I e chlSab2.chr27 19802438 34 - 48547382 I e rheMac3.chr5 16676919 34 + 184069350 I e canFam3.chr3 3738400 0 - 91889043 C a score=-533.000000 s hg38.chr4_KI270790v1_alt 35658 1 + 220246 c s panTro4.chr4 21423224 1 + 193495092 c i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21599703 1 + 198332218 t i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20211597 1 - 85365473 c i nomLeu3.chr20 C 0 C 0 s macFas5.chr5 20719305 1 + 189454096 G i macFas5.chr5 C 0 I 11 s papAnu2.chr5 16313415 1 + 178775436 g i papAnu2.chr5 C 0 I 11 s calJac3.chr3 21154655 1 - 190850796 c i calJac3.chr3 C 0 C 0 s canFam3.chr3 3738400 1 - 91889043 c i canFam3.chr3 C 0 C 0 e mm10.chr5 49141570 472 + 151834684 I e chlSab2.chr27 19802438 34 - 48547382 I e rheMac3.chr5 16676919 34 + 184069350 I a score=69310.000000 s hg38.chr4_KI270790v1_alt 35659 19 + 220246 atattactttactgtagga s panTro4.chr4 21423225 19 + 193495092 atattactttactgtagga i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21599704 19 + 198332218 atattactttactgcagga i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20211598 19 - 85365473 atattactttactgcagga i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16676953 19 + 184069350 ATATTActttactgcagga i rheMac3.chr5 I 34 C 0 s macFas5.chr5 20719317 19 + 189454096 ATATTActttactgcagga i macFas5.chr5 I 11 C 0 s papAnu2.chr5 16313427 19 + 178775436 atattaCTTTACTGCAGGA i papAnu2.chr5 I 11 C 0 s chlSab2.chr27 19802472 19 - 48547382 ATATTActttactgcagga i chlSab2.chr27 I 34 C 0 s calJac3.chr3 21154656 19 - 190850796 atattactttactgcagga i calJac3.chr3 C 0 C 0 s canFam3.chr3 3738401 19 - 91889043 atatttctttcctacagcc i canFam3.chr3 C 0 C 0 e mm10.chr5 49141570 472 + 151834684 I a score=261686.000000 s hg38.chr4_KI270790v1_alt 35678 80 + 220246 cttatcactaccatgtttaatataaatatatgcattgca-----------------tatcttccagta--gtgggtaccatgtggagcacttactaaat s panTro4.chr4 21423244 80 + 193495092 cttatcactaccacctttaatataaatatatgcattgca-----------------taatttccagta--gtgggtaccgtgtggagcacttactaaat i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21599723 80 + 198332218 cttatcactaccacctttaatataaaaatatgcattgca-----------------tatcttccagta--gtgggtaccatgtggagcacttactaaat i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20211617 80 - 85365473 cttatcactaccacctttaatagaaatatatgcattgca-----------------tatcttccagta--gtgggtaccctgtggagcactgacaaaat i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16676972 80 + 184069350 ctcatcactaccacctttaatataaatatgtgcattgca-----------------tatcttccagta--gtgggtagagtgtggagcacttactaaat i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20719336 80 + 189454096 ctcatcactaccacctttaatataaatatgtgcattgca-----------------tatcttccagta--gtgggtagagtgtggagcacttactaaaT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16313446 80 + 178775436 CTCATCACTACCACCTTTAATATAAATATGTGCATTGTA-----------------TATCTTCCAGTA--GTGGGTAGAGTGTGGAGCAATTACTAAAT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19802491 80 - 48547382 ctcatcactaccacctttaatataaatatgtgcattgca-----------------tatcttccagta--gtgggtagagtgtggagcacttactaaaT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21154675 97 - 190850796 cttatcactaccacctttaatataaatatgtacattgcatatcttctagtagtgggtatCTTCTAGTA--GTGGGTAGAGTGTAGAGAACTTACTAAAT i calJac3.chr3 C 0 I 306 s mm10.chr5 49142042 68 + 151834684 CTTATTGCCAC----TTTAATATAAATTCATATATGGTA-----------------CATGTTAAATAAATATGTATATAATATGG----------AAAT i mm10.chr5 I 472 C 0 s canFam3.chr3 3738420 77 - 91889043 ---cttaccaccactttgaagataaatgtgttcattgtg-----------------tatcttctatta--gtggctccattacacagcgcttcctaaat i canFam3.chr3 C 0 C 0 a score=1121307.000000 s hg38.chr4_KI270790v1_alt 35758 344 + 220246 gtgtttcgtcatgtgactgtttt---------------atcTGTTTTCTCTTAAATAAATATT---GAGTGCTTTG-CAACACAAAGTTTAGTGCTCTACGGAGATGAACTTTCCTAGAGTTAATATTCATCGC--------------------TAGTAGACTATACTGTGACAAAAATAATGTAATTACTTTGACTATTTTCCACCGTGGATATTACCGGAATCACATTATTTCACAGTCATTATTAAAATGGCCAgaaagattagaaaagtaaaatacaatattgg-aa-aaaaatag--aaaactgaaaattgCCACCATATCTACTTAGTCTTTGACATGGCTATGTAAAAAACATTGGTCCTGTATA----------------------------TGGATGAACCTCATG s panTro4.chr4 21423324 344 + 193495092 gtgtttcatcatgtgactgtttt---------------atcTGTTTTCTCCTAAATAAATATT---GAGTGCTTTG-CAACACAAAGTTTAGTGCTCTATGGAGATGAACTTCCCTAGAGTTAATATTCATCGC--------------------TAATAGACTACACTGTGACAAAAATAATGTAGTTACTTTGACTATTTTCCACCGTGGATATTACCAGAATCACATTATTTCACAGTCATTATTAAAATGGCCAGAAAGATTAGAAAAGTAAAATACAATATTGG-AA-AAAAATAG--AAAACTGAAAATTGCCACCATATCTACTTAGTCTTTGACATGGCTATGTAAAAAACATTGGTCCTGTATA----------------------------TGGATGAACCTCATG i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21599803 344 + 198332218 gtgtttcatcatgtgactGTTTT---------------ATCAGTTTTCTCCTAAATAAATATT---GAGAGCTTTG-CAACACAAAGTTTAGTGCTCTATGGAGATGAACTTTCCTAGAGCTAATATTCATCAC--------------------TAGTAGATTATACTGTGACAAAAATAATGTAATTACTTTGACTATTTTCCACCATGGATATTACCAGAATCACATTATTTCACAGTCATTATTAAAATGGTCAGAAAGATTAGAAGAGTAAAATACACTATGGG-AA-AAAAATAG--AAAACTGAAAATTGCCACCATATCTACTTAGTCTTTGACAGGGCTATGTAAAAAATATTGGTCCTGTATA----------------------------TGGATGAACCTCATG i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20211697 345 - 85365473 gtgtttcatcatgtgactgtttt---------------atcaGTTTTCTCCTAAATAAATATT---GAGTGCTTTG-CAACAGAAAGTTTAGTGCTCTATGGAGATGAACTTTCCTAGAGTTAATATTCATCAC--------------------TAGTAGATTATACTATGACAAAAATAATGTAATTATTTTGACTATTTTCCACCATGGATATTACCGGAATCATATTGTTTCACAGACATTATTAAAATGGCCAGAAAGATTAGAAGAGTAAAATACAATATTGGAAA-AAAAATAG--AAAACTGAAAACTGCCACCATATCTACTTAGTCTTTGACATGGCTATGTAAAAAATATTGGTCCTGTATA----------------------------TAGATGAACCTCATG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16677052 348 + 184069350 gtgtgtcatcgtgtgaccgtttt--------------CATCATTTTCCTCCTAAATAATTGCT-AGGAATACTTTG-CAACAGAAAGTTTAGTGCTCTATGGAGATGGACTTTCCTACAGTTAATATTCATCAC--------------------TAGTAGATTATGCTGTGACAAAAATAATGTAATTACGTTGACTATTTTCCACCATGGATATTACCAGAATCACATTATTTCACACTCCTTATTTAAATGTCCAGAAAGATTAGAATAGTAAAATACAGTATTGGAAA-AAAACTAG--AAAACTGAAAATTGCCATCGTATCTACTTAGTCTTTGACATGGCTATGTAAAAAATACTTGTCCTGTTTA----------------------------TAGATGAGCCTCATG i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20719416 348 + 189454096 GTGTGTCATCGTGTGACTGTTTT--------------CATCATTTTCCTCCTAAATAATTGCT-AGGAATACTTTG-CAACAGAAAGTTTAGTGCTCTATGGAGATGGACTTTCCTACAGTTAATATTCATCAC--------------------TAGTAGATTATGCCGTGACAAAAATAATGTAATTACGTTGACTATTTTCCACCATGGATATTACCAGAATCACATTATTTCACACTCATTATTTAAATGTCCAGAAAGATTAGAATAGTAAAATACAGTATTGGAAA-AAAACTAG--AAAACTGAAAATTGCCATCGTATCTACTTAGTCTTTGACATGGCTATGTAAAAAATACTTGTCCTGTTTA----------------------------TAGATGAGCCTCATG i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16313526 348 + 178775436 GTGTGTCATCGTGTGACTGTTTT--------------CATCATTTTCCTCCTAAATAATTGCT-AGGAATACTTTG-CAACAGAAAGTTTAGTGCTCTGTGGAGATGGACTTTCCTACAGTTAATATTCATCAC--------------------TAGTAGATTATGCTGtgacaaaaataatgtaattactTTGACTATTTTCCACCATGGATATTACCAGAATCACATTATTTCACACTCATTATTTAAATGTCCAGAAAGATTAGAATAGTAAAATACagtattggaaa-aaaaatag--aaaacttaaaattgcCATCGTATCTACTTAGTCTTTGACTTGGCTATGTAAAAAATACTTGTCCTGTTTA----------------------------TAGATGAGCCTCATG i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19802571 348 - 48547382 GTGTGTCATCGTGTGACTGTTTT--------------CATCATTTTCCTCCTAAATAATTGCT-AGGAATACTTTG-CAACAGAAAGTTTAGTGCTCTATGGAAATGGACTTTCCTACAGTTAATATTCATCAC--------------------TAGTAGATTATGCTGTGACAAAAATAATGTAATTACTTTGACTATTTTCCACCATGGATATTACCAGAATCACATTATTTCGCACTCATTATTTAAATGTCCAGAAAGATTAGAAGAGTAAAATACAGTACTAGAAA-AAAAACAG--AAAACTGAAAATTGCCATCATCTCTACTTAGTCTTTGACATGGCTATGTAAAAAATATTGGTCCTGTTTA----------------------------TAGATGAGCCTCATG i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21155078 345 - 190850796 GTGTTTCGTCATGTGACTGCTTT--------------TATCTTTTTCCTCCTAAATCAATATT-AGGAATGCTTTG-CAACAGAAAGTTTAGTGCTCTATGGAGAAGGACCTTCCTAGAGTTAATATTCATCAT--------------------TAGTAGATTATACTGTGACAAAAATAATG----TACTTTGACTATTTTCCACCGTGAATATTACCGGAATCACATTGTTTTACACTTACTGTTAAAATGGCCAGAAAGATTAGAGGAGCAAAATACAATATTGGAAACAAAAATAG--AAAACTGAAAATTGCCACTCTATCTACTTAGCCTTTGATATGGCTATGTAAAAAATATTTGTCCTGTATG----------------------------TGAATGAAACTTATG i calJac3.chr3 I 306 C 0 s mm10.chr5 49142110 336 + 151834684 ATACTTGGTAGCTAGAATTTTTAAAACATATTTCACATATCCCATTTTCTTCACATAATCACTTTGGAGTATTTTC-TGATAAATGATTTCAAATTCTATGTAGATAAACTTTGCTAGATTCTGTATCGACCCT--------------------CAGCAACTGGTACTGTGCTATCACTGATGTAATAATCTTGCCTGAATCATATCAT-----------GATTCATATTATTTTATACTCTCTATAAGCATGTCAAGAGAAATAAGAAAAATGAAAGGCAGTACTGGAAA-AAA-------------TAAAGTTTCCCTTTTGTAGACTTGGTCTTCAGTATAGCTGTGGGAAAA-----TGCTCTGTACA----------------------------AAGTTGAACTTCATG i mm10.chr5 C 0 C 0 s canFam3.chr3 3738497 370 - 91889043 atgtttgaccacatgactctttt--------------tATTGTTTTTACCCTAGATGAATGTTTAGGAATGCTTTGCCGATGGAAATTTCAGTGATCTATAGTAATAAACCTTCCCAGATTTAATATACATGACAGGAAATGTACACAAATGTACAGCAAATTATACTGTGACAACGCCAATGTAATTACCTCGGCTAGTTT-CACCATGGATATTACCAGAATCACGTTATTTCACACTCATTG---AGATGGCAAGAAAGATCAGGAGAGTAAAATGCAATACTGGGGA-AAAAACAAATAAAATTGAAA---------------------TCTTTAATATGGTTGTAGAAAAA-----TGTCCTGTATAGGAGGTgcctggctggctcagttggtagaggatgagactcttg i canFam3.chr3 C 0 I 103 a score=1297960.000000 s hg38.chr4_KI270790v1_alt 36102 383 + 220246 ACTTCTGTAATATTTTAGTGGTGATTTTATG-AAAACATTGTCCTTTTCTAAA---GTCCCTGAA-AATCA--GTTTTGTATCTTCAAATTAGAAAGCTGGAGAGAGC-AATGCGTCATGGGGTTATGGAAGAGAGAGTAGGAATCTGGTCCCAAGTGAATTCAAATACACCACTTGGGTCCCATTCAT-CTACTCTC-TGGCCCATGG---TACCAACCTGGTCCTTCC---ATGAAGGTGCCTTTTGGAGACAGCAGAATATCCTAGGCAT-TTGCTTCAATTTTCCAATTTTAGACCCAAAGTCAAATGTTTCCCAAATGATTTAAATTGATACACATAG-GCCACTGGCACTGGGATTTCCATTTCCTTCCTGGGCTTTGTAACTATAGAAAAACAA s panTro4.chr4 21423668 382 + 193495092 ACTTCTGTAATATTTTAGTGGTGATTTTATG-AAAACATTGTCCTTTTCTAAA---GTCCCTGAT-AATCA--GTTTTGTATCTTCAAATTAGAAAGCTGGAGAGAGC-AATGCGTCATGGGGTTATGGAATAGAGAGTAGGAAACTGGTCCCAAGTGAATTCAAATACACCACTTGGGTCCCATTCAT-CTACTCTC-TGGCCCATGG---TACC-ACCTGGTCCTTCC---ATGAAGGTGCCCTTTGGAGACAGCAGAATATCCTAGGCAT-TTGCTTCAATTTTCCAATTTTAGACCCAAAGTCAAATGTTTCCCAAATGATTTAAATTGATACACATAG-GCCACTGGCACTGGGATTTCCATTTCCTTCCTGGGCTTTGTAGCTATAGAAAAACAA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21600147 379 + 198332218 ACTTCTATAATATTTAAGTGGTGATTTTATG-AAAACATTGTCCTTTTCTAAG---GTCCCTGAT-AATCAATGTTTTGTATCTTCAAATTAGAAAGCTAGAGAGAGCAAATGCGTCATGGGGTTATGGAATGGAGAGTAGGAAACTGGTCCCAAGTGAATTCAAATACACCACTTGGGTCCCATTCAT-CTACTCTC-TGGCCCATGG---TACC-ATCTGGTCCTTCC---ATGAAGGTGCCCTTTGGAGACAGCAGAATATCCTAGGCAT-TTGCTTCAATTTTCCAATTTTAGACCCAAAGTCAAATGTTTCCCAAATGATTTAAATTGACACACGTAG-GC------CACTGGGATTTCCATTTCCTTCCTGGGCTTTGTAACTATAGAAAAACAA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20212042 378 - 85365473 ACTTCTGTAATATTTTAGTGGTGATTTTCTG-AAAACATTGTCCTTTTCTAAG---GTCCCTGAT-AATCAGTGTTTTGTATCTTCAAATTAGAAAGCTGGAGAGAGC-AATGCGTCATGGGGTTATGGAATGGAGAGTAGGAAACTAGTCCCAAGTGAATTCGAATACACCACTTGGATCCCATTCAT-CTACTCTC-TGGCCCATGG---TACC-ACTTGGTCCTTCC---ATGAAGGTGCCCTTTGGAGACAGCAGAATATCCTAGGCAT-TTGCTTCAATTTTCCAATTTTAGAACCAAAGTCAAATGTTTCCCAAATGACTTAAATTGACACCTGTAG-GC------CACTGGGACTTCCATTTCCTTCCTGGGCTTTGTAACTATAGAAAAACAA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16677400 378 + 184069350 ACTTCCGTAATATTTTAGTGGTGATCTTATG-AAAACATTGTCCTTTTCTAAG---ATCCCTGAT-AATCAATGTTTTGTATCTTCAAATTAGAAAGCTGGAGAGAGC-AATGCATCATGGGGTTATGGAATAGATAGTAGGAAACTGGTCCCAAGTGAATTCAAATACACCACTTGGGTCCTATTCAT-CTACTCTC-TGGCCCATGG---TACT-GCCTGGTACTTCT---GTGAAGGTGCCCTTTGAAGACAGCAGAATATCCTAGGCAT-TTCCTTCAATTTTCCAATTTTAGATCCAAAGTCAAATGTTTCCCAAATGATTTAAATTGACACACGTAG-GC------CACTGGGATTTCCATTTCCTTCCTGGTCTTTGTAACTATAGAAAAACAA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20719764 378 + 189454096 ACTTCCGTAATATTTTAGTGGTGATCTTATG-AAAACATTGTCCTTTTCTAAG---ATCCCTGAT-AATCAATGTTTTGTATCTTCAAATTAGAAAGCTGGAGAGAGC-AATGCATCATGGGGTTATGGAATAGATAGTAGGAAACTGGTCCCAAGTGAATTCAAATACACCACTTGGGTCCTATTCAT-CTACTCTC-TGGCCCATGG---TACT-GCCTGGTACTTCT---GTGAAGGTGCCCTTTGAAGACAGCAGAATATCCTAGGCAT-TTCCTTCAATTTTCCAATTTTAGATCCAAAGTCAAATGTTTCCCAAATGATTTAAATTGACACACGTAG-GC------CACTGGGATTTCCATTTCCTTCCTGGTCTTTGTAACTATAGAAAAACAA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16313874 378 + 178775436 ACTTCTGTAATATTTTAGTGGTGATCTTATG-AAAACATTGTCCTTTTCTAAG---ATCCCTGAT-AATCAATGTTTTGTATCTTCAAATTAGAAAGCTGGAGAGAGC-CATGCATCATGGGGTTATGGAATGGACAGAAGGAAACTGGTCCCAAGTGAATTCAAATACACCACTTGGGTCCTATTCAT-CTACTCTC-TGGCCCATGG---TACT-GCCTGGTACTTCT---GTGAAGGTGCCCTTTGAAGACAGCAGAATATCCTAGGCAT-TTCCTTCAATTTTCCAATTTTAGATCCAAAGTCAAATGTTTCCCAAATGATTTAAATTGACACACGTAG-GC------CACTGGGATTTCCATTTCCTTCCTGGTCTTTGTAACTATAGAAAAACAA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19802919 380 - 48547382 ACTTCCGTAATATTTTAGTGGTGATCTTATG-AAAACATTGTCCTTTTCTAAG---ATCTCTGAT-AATCAATGTTTTGTATCTTCAAATTAGAAAGCTGGAGAGAGC-AATGCATCATGGGGTTATGGAATGGATAGTAGGAAACTGGTCCCAAGTGAATTCAAATACACCACTTGGGTCCTATTCAT-CTACTCTC-TGGTCCATGGTACTACT-GCCTGGTACTTTT----TGAAGGTGCCCTTTGAAGACAGCAGAATATCCTAGGCAT-TTCCTTCAATTTTCCAATTTTAGATCCGAAGTCAAATGTTTCCCAAATGATTTAAATTGACACACGTAG-GC------CACTGGGATTTCCATTTCCTTCCTGGTCTTTGTAACTATAGAAAAACAA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21155423 378 - 190850796 ACTTCTGTAATGTTTTGGTGGTGATTTTATG-AAAACATGGTCCTTTCCTAAG---ATCCCTGAT-AATCAGTGTTTCATATCTTCAAATTAGAAAGCTGAAGAAAAC-ATCGGGTCATGGGGTTATGGAATGGAGAGCAGGATACTGGTCCCAGGTGAATTCAAACACAGCACTCGGGTCCCATTAGT-CTATTCTC-TGGCCCATAG---TACC-ACTTGGTACTTCT---GTGAAGGTGCCTTTCGGAGACGGCAGAACATCCCAGGCAT-TTCCTTCAGTTTTATAATTTTAGATCCAAAGTCGAATGTTTCCCAAATGACTTAAATTGATACACATAG-GA------CACTGGGATTTTCATTTCCTTCCGGGGCTTTGTAACTACAGAAAAACAA i calJac3.chr3 C 0 C 0 s mm10.chr5 49142446 334 + 151834684 ACTACAGTGACATTTCAGTGATGGTTTCATGAAAAAAAATATGTTCTACTAGG---CTTACTGAAGAGTCGGTATTTTATGC------ATTAGTA--------------TATGAAT------ATTAAAGAATAGAGAAGAGAGGATTTGTGTCTTGTATACTC-AGTGCTTCATTTGGGTTCTGTTTGC-ATACACACGTCTCCCCTCC---CAGC-ATTGAGTCTCACTAGGATGAGAACATCCTCTGTAGGGAGAATAGTATTTTA------TTTCATCTACTCTCC-------------------AATGTTTCTGGAAAGATTTATATTGACAGGCATAGTAC------CTTTCAGATTTCAGTTTACTTTCTTCATTTTA-AACaatacatacacaa i mm10.chr5 C 0 I 292 s canFam3.chr3 3738970 378 - 91889043 ACTCCAGTAATATATCAATAATGATTTTATA-AAA--ATTTTCCTCTTTCAAGTTAATCAATGAT-AATCAATGGTCTGCCTCTTGAAATCAGAAAACTAGAGACAAC-AATGCACCCTGATGCCATGGGATGGAGAGTAGAAAACTGTTTCCAAGTGGACTCAAACCCACCACTCAGGTCCCAGTAGCACTACTCCC-TGGCTGACTG---CACT-ACTTGG-CTTGCT---CTGAGGACACCCTT--GAGATGGTGGACCATCCTACACATCTTCCTTCTAGTTTCCAATTTTGAATCCAAAGTCAAATGTCTCTCGAGTGACTTAAATTGACACTTTCAG-GA------CATGGCAAGTTTAGTTTCCTTTCTGGGTTTTTTAACTATAGAAGAACAA i canFam3.chr3 I 103 C 0 a score=63766.000000 s hg38.chr4_KI270790v1_alt 36485 20 + 220246 CTTACGAAGGAAGATGTGGG----- s panTro4.chr4 21424050 20 + 193495092 CTTACGAAGGAAGATGTGGG----- i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21600526 20 + 198332218 CTTACGAAGGAAGATGTGGG----- i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20212420 20 - 85365473 GTTACGAAGGAAGATGTGGG----- i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16677778 20 + 184069350 CTTACGAAGGAAGATGTGGG----- i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20720142 20 + 189454096 CTTACGAAGGAAGATGTGGG----- i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16314252 20 + 178775436 CTTACGAAGGAAGATGTGGG----- i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19803299 20 - 48547382 CTTACGAAGGAAGATGTGGG----- i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21155801 20 - 190850796 CTTACAAAGGAAGATGTGGG----- i calJac3.chr3 C 0 C 0 s canFam3.chr3 3739348 25 - 91889043 GTTAGAGAGGTGGACAAGGAGGGGG i canFam3.chr3 C 0 I 606 e mm10.chr5 49142780 292 + 151834684 I a score=976808.000000 s hg38.chr4_KI270790v1_alt 36505 294 + 220246 GATTCTTCTACCACAGGTAGTCAGGTAGACCTGTCCCCAGAGATGAAGAAATGTACATGGGATATACGAATGAAGGGTGATGGGAAGGGAAATTGAGGTTAATGCTGAGGTTTCTGGCTGAGAGTCTGAATACAGTCTACTGTGA-GCAAAAGTGGTTATGGTGC--TTTTTGATTTTTAAAAGTTAGCT-GAGAGGTGTGCCGTGGCCAGCAGTGTTGGTAGCCAGAAA------CTTCCCGTAAACCAGAGAGCACACTGCATCCAAGGGCTGTGCTACAAATCAGCTTTGGTATGAATTTA s panTro4.chr4 21424070 293 + 193495092 GATTCTTCTACCACAGGTAGTCAGGTAGACCTGTCCCCAGAGATGAAGAAATGTACATGGGATATACGAATGAAGGGTGATGGGAAGGGAAATTGAGGTTAATGCTGAGGTTTCTGGCTGAGAGTCTGAATACAGTTTACTGTGA-GCAAAAGTGGTTATGGTG---TTTTTGATTTTTAAAAGTTAGCT-GAGAGGTGTGCTGTGGCCAGCAGTGTTGGTAGCCAGAAA------CTTCCCATAAACCAGAGAGCACACTGCATCCAAGGGCTGTGCTACAAATCAGGTTTGGTATGAATTTA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21600546 294 + 198332218 GATTCTTCTACCACAGGTAGTCAGGTAGACCTGTCCCCAGAGATGAAAAAATGCACATGGGATTTATGAATGAAGGGTGATGGGAAGGGAAATTGAGGTTAATGCTGAGGTTTCTGGCTGAGAGTCTGAATACAGTTTACTGTGA-GCGAAAGTGGTTATGGTGC--TTTTTGATTTTCAAAAGTTAACT-GAGAGGTATGCTGTGGCCAGCAGTGTTGGTAGCCAGAAA------CTTCCCATAAACCAGAGAGCACACTGCATCCAAGGGCTGTGCTAGAAATCAGCTTTGGTATGAATTTA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20212440 294 - 85365473 GATTCTTCTACCACAGGTAGTCAGGTAGACCTGTCCCCAGAGATGAAAAAATGCACATGGGATATACGAATGAAGGGTGATGGGAAGGGAAATTGAGGTTAACGCTGAGGTTTCTGGCTGAGAGTCTGAATACAGTTTACTGTGA-GTGAAAGTGATTACGGTGC--TTTTTGATTTTTAAAAGTTAGCT-GAGAGGTGTGCTGTGGCCAGCAGTGTTAGTAGCCAGAAA------CTTCCCATAAACCAGAGAGCACACTGCATCCAAGGGCTGTGCTACAAATCAGCTTTGGTATGAATTTA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16677798 293 + 184069350 GATTCTTCTACCACAGGTAGTCAGGTAGACTTGT-CCCAGAGACGAAAAAATGCACGTGGGATATATGAATGAAGGGCAATGAGAAGGGAAATTGAAGTTAATGCTGAGGTTTCTGGCTGAGAGTCTGAATACAATTTACTGTGA-GCGAAAGTGGTTATGGTGC--TTTTTGATTTTTAAAAGTTAGCT-GAGAGGTGTGCTGTGGCCAGCAGTATTGGTAGCCAGAAA------CTTCCCATAAACCAGAGAGGACACTGCATCCAAGGGCTGTGTTACAGATCAGCTTTAGTATGAATTTA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20720162 293 + 189454096 GATTCTTCTACCACAGGTAGTCAGGTAGACTTGT-CCCAGAGACAAAAAAATGCACGTGGGATATATGAATGAAGGGCGATGAGAAGGGAAATTGAAGTTAATGCTGAGGTTTCTGGCTGAGAGTCTGAATACAATTTACTGTGA-GCGAAAGTGGTTATGGTGC--TTTTTGATTTTTAAAAGTTAGCT-GAGAGGTGTGCTGTGGCCAGCAGTATTGGTAGCCAGAAA------CTTCCCATAAACCAGAGAGGACACTGCATCCAAGGGCTGTGTTACAGATCAGCTTTAGTATGAATTTA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16314272 291 + 178775436 GATTCTTCTACCACAGGTAGTCAGGTAGACTTGT-CCCAGAGATGAAAAAATGCACGTGGGATATATGAATGAAGGGCGATGAGAAGGGAAATTGAAGTTAATGCTGAGGTTTCTGGCT--GAGTCTGAATACAATTTACTGTGA-GCGAAAGTGGTTATGgtgc--tttttgatttttaaaagttagct-gagAGGTGTGCTGTGGCCAGCAGTATTGGTAGCCAGAAA------CTTCCCATAAACCAGAGAGGACACTGCATCCAAGGGCTGTGTTACAGATCAGCTTTAGTATGAATTTA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19803319 293 - 48547382 GATTCTTCTACCACAGGTAGTCAGGTAGACTTGT-CCCAGAGACGAAAAAATGCACATGGGATATATGAATGAAGGGCGATGGGAAGGGAAATTGAAGTTAATGCTGAGGTTTCTGGCTGAGAGTCTGAATACAATTTACTGTGA-GCGAAAGTGGTGATGGTGC--TTTTTGATTTTTAAAAGTTAGCT-GAGAGGTGTGCTGTGGCCAGCAGTATTGGTAGCCAGAAA------CTTCCCGTAAACCAGAGAGGACACTGCATCCAAGGGCTGTGTTACAGATCAGCTTTAGTATGAATTTA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21155821 302 - 190850796 GATTCTTATACCACAGGGGGTCAGGTGGACCTGTCCCCAGAGATGAAAAGGTACACATGGGTTATATGAATGAAGGGTGATGAGAAGGGAAATTGAGATTAATGCTGAGGTTTCTGACTGAGAGTCTAAATACAATTTACTGTGA-GTGAAAGTGATTATGGTGCTTTTTTTGATTTTTAAAAGTTAACT-GAGAGGTGTGCTGTGGCCAGCTGTGTTTGTAGCCAGAAACTTTCCCTTCCCATAAACCAGAGAGCATACTGCATCCAAGAACTGTGACACAAATCAGCTTTGGTATGAATTTA i calJac3.chr3 C 0 C 0 s canFam3.chr3 3739979 284 - 91889043 GATTCTTCTACCACCTGCGGTCAGATGGAGGGGG--GCAGCAATGGAGAGGCGGACACGGGAGTCTGGGATGGGGGAAGGAGGACAGTGCTGCTGCTGGAGATGCTGATGTTCCTGAGTGAGAGTCTGACCAGAAGCTACTATGACGGGAAACTGGTTCAGATGC--CCTCTGATTTT-AAAAGGTAGCTAGAGAGGTGTGTTGTGGCCAGCAGCATCTGGGGCCAGGAA------CTTCCCATAAACCAGAGTG--TCCTGCATCCAAGGGCAATGCTACAAATCAGCCTTCCCTT------- i canFam3.chr3 I 606 C 0 e mm10.chr5 49142780 292 + 151834684 I a score=132767.000000 s hg38.chr4_KI270790v1_alt 36799 34 + 220246 GGACATTTGCAAGTATTATGCCTGTTACCTTAAA s panTro4.chr4 21424363 34 + 193495092 GGACATTTGCAAGTATTATGCCTGTTACCTTAAA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21600840 34 + 198332218 GGACATTTGCAAGTATTATGCCTGTTACCTTAAA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20212734 34 - 85365473 GGACATTTGCAAGTATTATGCCTGTTATCTTAAA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16678091 34 + 184069350 AGACATTTCCAAGTATTATGCCTGTTACCTTAAA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20720455 34 + 189454096 AGACATTTCCAAGTATTATGCCTGTTACCTTAAA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16314563 34 + 178775436 AGACGTTTGCAAGTATTATGCCTGTTACCTTAAA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19803612 34 - 48547382 AGACATTTGTAAGTATTATGCCTGTTACCTTAAA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21156123 27 - 190850796 GGACAT-------TATTCTGTCTGTTACCTTAAA i calJac3.chr3 C 0 C 0 s mm10.chr5 49143072 34 + 151834684 GGACATTTAAAAACATTGTACCTGCTACCTGAAA i mm10.chr5 I 292 C 0 s canFam3.chr3 3740263 34 - 91889043 GGACATTTGCAGGCATTATGCTTGTTACCTTACA i canFam3.chr3 C 0 I 96 a score=8595.000000 s hg38.chr4_KI270790v1_alt 36833 2 + 220246 TG s panTro4.chr4 21424397 2 + 193495092 TG i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21600874 2 + 198332218 TG i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20212768 2 - 85365473 TG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16678125 2 + 184069350 TG i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20720489 2 + 189454096 TG i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16314597 2 + 178775436 TG i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19803646 2 - 48547382 TG i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21156150 2 - 190850796 TG i calJac3.chr3 C 0 C 0 s mm10.chr5 49143106 2 + 151834684 TG i mm10.chr5 C 0 I 12 e canFam3.chr3 3740297 96 - 91889043 I a score=826706.000000 s hg38.chr4_KI270790v1_alt 36835 282 + 220246 GGATTTAGgacctggtgcagtggctcacgcctgtaatcccagcactttgggaggccaaggtaggtggatcacttgaggccaggagttcgagaccagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaatcagccaggtgtggtggcgtatgcctataatcccagctactcaggaggcttaggcaggataattgcttgaacctgggaggcagaggttacagtgagctgagctcacgccactacacttcagcctgggcggcagagtgagat s panTro4.chr4 21424399 282 + 193495092 GGATTTAGgacctggtgcagtggctcatgcctgtaatcccagcactttgggaggccaaggcaggtggatcacttgaggccaggagttcgagaccagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaatcagccgggtgtggtggcgtatgcctataatcccagctactcaggaggcttacgcaggataattgcttgaacctgggaggcagaggttacagtgagctgagctcacgccactgcacttcagcctgggcggcagagtgagat i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21600876 282 + 198332218 GGATTTAGgacctggcgcggtggttcatgcctgtaatcccagaactttgggaggccaaggcaggcagatcacttgaggctaggagttcgagatcagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaattagccgggtgtggtggcgtatgcctataatcccagctactcaggaggctgaggcaggataattgcttgaacctgggaggcagaggttgcagcgagctgagctcgcgccactgcacttcagcctgggcggcagagtgagat i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20212770 282 - 85365473 GGATTTAGgacctggcgtggtggctcacgcctgtaatcccagcactttgggaggccaaggcaggcggatcacttgaggccaggagttcgagaccagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaattagccgggtgtggtagcgtacgcctataattctagctactcaggaggctaaggcaggataattgcttgaacctgggaggcagaggttgcagcgagctgagctcgtgccactgcacttcagcctgggcggcagagtgagat i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16678127 282 + 184069350 TCATTCGGggcctggcgcagtggctcacgcctgtaatcccagcactttgggcggccaaggcaagtggatcacttgaggccaggagttcgagaccagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaattagctgggtgtggtggtgcgcgcctgtaatcccagctactcaggaggccgaggcaggacaattgcttgaaccagggaggccgaggttgcagcgagctgagctcacacccctgcacttcagcctgggtggcagaaaaatat i rheMac3.chr5 C 0 I 92 s macFas5.chr5 20720491 282 + 189454096 TGATTCGGggcctggcgcagtggctcacgcctgtaatcccagcactttgggcggccaaggcaagtggatcacttgaggccaggagttcgagaccagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaattagctgggtgtggtggtgcgcgcctgtaatcccagctactcaggaggccgaggcaggacaattgcttgaaccagggaggccgaggttgcagcgagctgagctcacacccctgcacttcagcctgggtggcagagtgagat i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16314599 282 + 178775436 TGATTcggggcctggcgcagtggctcacgcctgtaatcccagcactttgggcggccaaggcaagtggatcacttgaggccaggagttcgagaccagcctggccaacatggtgaaaccctgtctttactaaaaatacaaaaattagccgggtgtggtggtgcgtgcctgtaatcccagctactcaggaggccgaggcaggacaattgcttgaacaagggaggccgaggttgcagcgagctgagctcacacccctgcacttcagcctgggtggcagagtgagat i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19803648 282 - 48547382 TGATTCGGggcctggcgcagtggttcacgcttgcaatcccagcactttgggaggccaaagcaggtggatcacttgaggccaggagttcaagaccagcctggccaacatggtgaaaccccgtttctattaaaaatacaaaaattagccgggtgtggtggtgcgcgcctgtaatcccagctactcagggggccgaggcaggacaattgcttgaaccagggaggccgaggttgcagtgagctgagctcacacccctgcacttcagcctgggtggcagagtgagat i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21156152 280 - 190850796 GGATTCAGggcctggcactatggctca-acctgtaatcccagcactttggagggctaaggcaggcagatcacttgaggccaggagttcgagaacagcctgaccaacatggtgaaaccctgactctactaaaaatacaaaaattagccaagtgtggtggcacatgcctgtaatcctagctactcaggaggctgaggcaaaagaattgctggaacctgagaggcagaggttgcagtgagctgagag-attccactgcactccaacctgggtgacagagtaagat i calJac3.chr3 C 0 C 0 e mm10.chr5 49143108 12 + 151834684 I e canFam3.chr3 3740297 96 - 91889043 I a score=26663.000000 s hg38.chr4_KI270790v1_alt 37117 30 + 220246 tctgtctcaaaaat------------aaataaataaataaat s panTro4.chr4 21424681 30 + 193495092 tctgtctcaaaaat------------aaataaataaataaat i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21601158 26 + 198332218 tctgtctcaa----------------aaataaataaataaat i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20213052 26 - 85365473 tctgtctcaa----------------aaataaataaataaaT i nomLeu3.chr20 C 0 C 0 s macFas5.chr5 20720773 42 + 189454096 tatgtctAAAatatatatatatatatatatatatatatatat i macFas5.chr5 C 0 I 56 s papAnu2.chr5 16314881 27 + 178775436 tatgtctcaaa---------------aaaaaaatatatatat i papAnu2.chr5 C 0 I 56 s chlSab2.chr27 19803930 26 - 48547382 tatgtctcaa----------------aaaaatatatatatat i chlSab2.chr27 C 0 I 18 s calJac3.chr3 21156432 19 - 190850796 tctgtcataaa---------------aaataaat-------- i calJac3.chr3 C 0 C 0 e mm10.chr5 49143108 12 + 151834684 I e rheMac3.chr5 16678409 92 + 184069350 I e canFam3.chr3 3740297 96 - 91889043 I a score=94602.000000 s hg38.chr4_KI270790v1_alt 37147 38 + 220246 atataaataaaACAAAATAAATGAGATTCAGTCTGTGC s panTro4.chr4 21424711 38 + 193495092 atataaataaaACAAAATAAATGAGATTCAGTCTGTGC i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21601184 38 + 198332218 atataaataaaACAAAATAAATGAGATTCAGTCTGTGC i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20213078 38 - 85365473 ATATAAATAAAACAAAATAAATGAGATTCAGTCTGTGC i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16678501 37 + 184069350 atatatataaaacaaaataaatGGGATTAAGTCTGCG- i rheMac3.chr5 I 92 C 0 s macFas5.chr5 20720871 37 + 189454096 ATATATATAAAACAAAATAAATGGGATTAAGTCTGCG- i macFas5.chr5 I 56 C 0 s papAnu2.chr5 16314964 37 + 178775436 atatatataaaacaaaataaatgggaTTAAGTCTGCA- i papAnu2.chr5 I 56 C 0 s chlSab2.chr27 19803974 37 - 48547382 acacatataAAACAAAATAAATGGGATTAAGTCTGTG- i chlSab2.chr27 I 18 C 0 s calJac3.chr3 21156451 37 - 190850796 atacaaagaaaacaaaaTAAATAGGATTCAGTCTGTC- i calJac3.chr3 C 0 C 0 e mm10.chr5 49143108 12 + 151834684 I e canFam3.chr3 3740297 96 - 91889043 I a score=59719.000000 s hg38.chr4_KI270790v1_alt 37185 18 + 220246 TTTTTCAGGATTTAAATT s panTro4.chr4 21424749 18 + 193495092 TTTTTCAGGATTTAAATT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21601222 18 + 198332218 TTTTTCACGATTTAAATT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20213116 18 - 85365473 TTTTTCAGGATTTAAATT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16678538 18 + 184069350 TTTTTCAGGATTTAAATT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20720908 18 + 189454096 TTTTTTAGGATTTAAATT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16315001 18 + 178775436 TTTTTCAGGATTTAAATT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19804011 18 - 48547382 CTTTTCAGGATTTAAATT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21156488 18 - 190850796 TTTCTCAGGATTTGAATT i calJac3.chr3 C 0 C 0 s mm10.chr5 49143120 18 + 151834684 TTTCTCAGAAACACAATT i mm10.chr5 I 12 C 0 e canFam3.chr3 3740297 96 - 91889043 I a score=3992448.000000 s hg38.chr4_KI270790v1_alt 37203 1211 + 220246 TGCCAAAAGAAATTGAAATTATACAT---------TGCTAGTCTCATTAGAGAGTTCTGTCATATTAGGTGACACTAA----CAAGAAAAAAAATCCATGTCCAAAGGC----TAAGGCTATCAGGAGCATCTAGTTA----CAATGATC---------AAAGTGATGATTAAAGAAAAATAACTATTTCTTGCCTGTTTAAAGCCATGCCATTACAACAGACTAATTGAAATG-TGAAGCAAAGATTATGTAGATTTTGC-TTGCTGGATGTTGTAATGTTAAGACTTTATTGATCAAAAAGAGGCAAGTAGCTTTTGAACTGTATTAGCAGTTCTTCTACTGGTTGGAAATTTATTTTCTGATAGTGTAAGTTACCAGAGCTTCATCATGCTGTGAAGTGTATTTCA---AGTCAAAAAAATTAAATTGAACCC-ATAATGCATAAGGGTCTT----TGTGCCTTGTAACCTagtgaataagaa-cataggct-ttggaatcagaaccaccttaatttacatataaacttagccat-tgttttgaa------------------------------------------------------aaagac----------------aatca-------------------------------agttttctaagcct------------------------------------------------cag-ttttttcaactgt-aaaagtgggatattaacagccac-ctgaataagtc--tatttatgaccaaatggaatgaataccaggccctagaccagtaagtaccacataatcatcagcaaataaatTGGGG-AA--ATAATTATAATAATAATTATCACCTC--TCtgtcgg---gctagagtggaa-------cttgaggttcatttaatccaa---gtctt--acaatttgaatgaggacactgag-tcacaaag-tggAAACAGTTTCAAAGTGCTttta----ttcattcgatgatatattgta-gaccccccatttgtcaagctctgtggtaggtactggCAAATGAAAGTATAAGCATTCACCATAT-ATGCATTCAC-----CATGTATGTATTCATACC-CAGACCCAT---TCA-AGGACTAATTGA----TGGCATCT-----GTCCCTTAAGGAGTTCGGAGTATACA------GAAGGACACACATGGTGAATTTTgtgctataacagagggctcaacaggttgc-----tgatggaagaacagaagacaccatgactctgccaggaaagccacttcagagaaaaggtggtaacttatggggtcttgaaggaag-aAAATGATTAATGT-CAACCATACAGA-CCTTCTAGACTATGCAGAGAAAGTATCAA-ccatattttactaatgagaaaaccaagaatttgaaaaa-----------atgtat---tattagtcgatggttccat s panTro4.chr4 21424767 1208 + 193495092 TGCCAAAAGAAATAGAAATTATACAT---------TGCTAGTCTCATTAGAGAGTTCTGTCATATTAGGTGACACTAA----CAAGAAAAAAAATCCATGTCCAAAGGC----TAAGGCTATCAGGAGCATCTAGTTA----CAATGATC---------AAAGTGATGATTAAAGAAAAATAGCTATTTCTTGCCTGTTTAAAGCCATGCCATTACAACAGACTAATTGAAATG-TGAAGCAAAGATTATGTAGATTTTGC-TTGCTGGATGTTGTAATGTTAAGACTTTATTGATCAAAAAGAGGCAAGTAGCTTTTGAATGGTATTAGCAGTTCTTCTACTGGTTGGAAATTTATTTTCTGATAGTGTAACTTACCAGAGCTTCATCATGCTGTGAAGTGTATTTCA---AGTCAAAAAAATTAAATTGAACCT-GTAATGCATAAGGATCTT----TGTGCCTTGTAACCTagtgaataagaa-cataggct-ttggaatcagaagaaccttaatttacatataaac--agccat-tgttttgaa------------------------------------------------------aaagac----------------aatca-------------------------------agttttctaagcct------------------------------------------------cag-ttttttcaactgt-aaaagtgggatattaacagccac-ctgaataagtc--tatttatgaccaaatggaatgaataccaggccctagaccagtaagtaccacataatcatcagcaaataaatTGGGG-aa--ataattataataataattatCACCTC--TCtgtcag---gctagagtggaa-------cttgaggttcatttaatccaa---gtctt--acaatttgaatgaggacactgag-tcacaaag-tggAAACAGTTTCAAAGTGCTttta----ttcattcgatgatatattgta-gaccccccatttgtcaagctctgtggtaggcactggCAAATGAAAGTATAAGCATTCACCATAT-ATGCATTCAC-----CATGTATGTATTCATACC-CAGACCCAT---TCA-AGGACTAATTGA----TGGCATCT-----GTCCCTTAAGGAGTTCGGAGTATACA------GAAGGACACACATGGTGAATTTTgtgctataacagagggctcaacaggttgc-----taatggaagaacagaaaacaccatgactctgccaggaaagccacttcagagaaaaggtggtaacttatggggtcttgaaggaag--aAACGATTAATGT-CAACCATACAGA-CCTTCTAGAGTATGCAGAGAAGGTATCAA-ccatattttactaatgagaaaaccaagaatttgaaaaa-----------atgtat---tattagtcgatggttccat i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21601240 1204 + 198332218 TGCCAAAAGAAATTGAAATTATACAT---------TGCTAGTCTCATTAGAGAGTTCTGTCTTATTAGGTGACACTAA----TAAGAAAAAAAATCCATGTCCAAAAGC----TAAGGCTATCAGGAGCATCTAGTTA----CAATGATC---------AAAGTGATGATTAAAGAAAAATAACTATTTCTTGCCTGTTCAAAGCCACGCCATTACAACAGACTAATTGAAATG-TGAAGCAAAGATTATGTAGATTTTGC-TTGCTGGATGTTGTAACATTAAGACTTTATTGATCAAAAAGAGGCAAGTAGCTTTTGAATGGTATTAGCAGTTCTTCTACTGGTTGGAAATTTATTTTCTGATAGTGTAACTTACCAGAGCTTCATCATGGTGTGAAGTGTATTTCA---AGTCAAAAAAATTAGATTGAATCC-GTAATGCACAAGGATCTT----TGTGCCTTgtaacctagtgaataagaa-cataggct-ttggaatcagaagaacctcaatttacatataaacttagccat-tgttttgaa------------------------------------------------------aaagac----------------aatca-------------------------------agttttctaagcct------------------------------------------------cag-ttttttcaactgt-aaaagtgggatattaacagccac-ctgaataagtc--tatttatgaccaaatggaatgaataccaggccctagaccaataagtaccacataatcatcagcaaataaatTGGGa-aa--ataattataataataattatCACCCC--TCtgtcag---gctagagtggaa-------cttgaggttcatttaatccaa---gtctt--acaatctgaatgaggacactgag-tcacaaag-tggAAACAGTTTCAAAGTGCTTtta----ttcattcgatgatatattgta-gaccccccatttgtcaagctctgtggtaggcactggcaaatgaaagtataagcaTTCACCATAT-ATGCATTCAC-----CATGTATGTATTCATACC-CAGAACCAT---TCA-AGGACTAATTGA----TGGCAACT-----GTCCCTTAA--------GAGTATACA------GAAGGATACACATTGTGAATTTTgtgctataatggagggctccacaggttgc-----tgatggaaaaacagaagacaccatgactctgccaggaaagctacttcaaagaaaaggtggtaacttgtggggtcttgaaggaag-aaaaggaTTAATGT-CAACCATACAGA-CCTTCTAGAGTAtgcagagaaagtatcaacccatattttactaatgagaaaaccaagaattagaaaaa-----------atgtat---tattagtcaatggttccat i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20213134 1182 - 85365473 TGCCAAAAGAAATTGAAATTATACAT---------TGCTAGTCTCATTAGAGTGTTCTGTCATATTAGGTGACACTAA----CAAGAAAAACAATCCATGTCCAAAGGC----TAAGGCTATCAGAAGCATCTAGTTA----CAATGATC---------AAAGTGATGATTAAAGAAAAATAACTATTTCGTTCCTGTTTAAAGCCATGCCATTACAACAGACTAATTGAAATG-TGAAGCAAAGATTATGTAGATTTTGC-TTGCTGGATGTTGTAATGTTAAGACTTTATTGATCAAAAAGAGGCAAGTAGCTTTTGCATGGTATTAGCAGTTCTTCTACTAGTTGGAAATTTATTTTCTGATAGTGTAACTTACCAGAGCTTCATCATGCTGTGAAGTGTATTTCA---AGTCAAAAAAATTACATTGAACTTGGTAATGCACAAGGATCTT----TGTG-CGTGTAACCTAGTGAATAAGGATCATAGGCTGGGGGAGTCAGAAGAACGTTAATTTACATATAAACTTAGCCAT-TGTTTTGAA------------------------------------------------------AAAGAC----------------GATCA----------------------------------------------------------------------------------------------ag-tttcttcaactat-aaaagtgggatattaacagccac-ctGAATAAGTC--TATTTATGGCCAAATGGAAGGAATACCAGGCCCTAGACCAGTAAGTACCACATAATCATCAGCAAATAAATTGGGA-AA--ATAATTATAATAATAATTATCACCTC--TCtgttag---gctagagtggaa-------cttgaggttcatttaatccaa---gtctt--acaatttgaatgaggacactgag-tcacaaag-tggAAACAGTTTCAAAGTGCTttta----ttcattcgatgatatattgta-gaccccccatttgtcaagctctgtggtaggcactggCAAATGAAAGTATAA----------------GCATTCAC-----CAGGTATGTATTCATACC-CAGACCCAT---TCA-AGGAATAATTGA----TGGCATCT-----GTCCCTTAAGGAGTTCGGAGTATACA------AAAGGACACACATGGTGAATTTTgtgctatcacacagggctcaacaggttgc-----tgatggaagaacagaagacaccatgactctgccaggaaagccacttcagagaaaaggtggtaacttatggggt-ttgaaggaag-aaaaggaTTAATGT-CAACCATACAGA-CCTTCTAGAGTATGCAGAGAAAGTATCAA-ccatattttactaatgagaaaaccaagaatttgaaaaa-----------atgtat---tattagttgatggttccat i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16678556 1214 + 184069350 TGCCATAAGAAATTGAAATTATACAT---------TGCTAATCTCATTAGAGAGTTCTGTCATATTAGGTGACACTAA----CAAGAAAAAAAATCCATGTCCAAAGGC----TAAAGCTATCAGGAGCATCTAGTTA----CAATGATC---------AAAGTGGTGATTAAAGAAAAATAACTATTTCTTGCCTGTTTAAAGCCATGCCATTACAACAGACTAATTGAAATG-TGAAGCAAAGATTATGTAGATTTTGC-TTGCTGGATGTTGTAATGTTAAGACTTTATTGATCAAAAAGAGGCAAGTAGTTTGTGAATAGTATTAGCAGTTCTTCTACTAGTTGGCAATTTATTTTCTGATACTGTGACTTACCGGAGCTTCACCATGCTGTAAAGTATATTTCA---AGTCAAAAAAATTAAATTGAACCC-ACAATGCATAAGGGTCTT----TGTGCCTTTTAACCTagtgaataagaa-cataggct-ttggaatcaggagaaccttaatttacatataaacttaaccat-tgttttgaa------------------------------------------------------aaagac----------------aatca-------------------------------aattttctaagcct------------------------------------------------cag-ttttttcaactgt-aaaagtgggatattaacagccac-ctgaataagtc---gtttatgaccaaatggaatgaataccaggccatagaccagtaagtaccacataatcatcagcaaataaatggGGA-AA--ATAATTATAATAATAATCATCACCTC--TTtatcag---gctagaatggaa-------cttgaggttcatttaatccaa---gtctt--acaatttgaatgaggacactgag-tctcaaag-tggAAACAGTTTCAAAGTGCTTTTA----TTCATTTGATGATATGTTGTA-GACCCCCCATTTGT-AAGCTCTGTGGTAGGCACTGGCAAATGAAAGTATAAGTATTCACCATAT-ATGCATTCAC-----CATGTATGTATTCATACC-CAGACCCAT---TCA-AGGAATAATTGA----TGGCATCCCTTAAGTCCCTTAAGGAATTCAGAGTATACA------GAAGGACACACATGGTGAATTTTgtgctataatggagggctcaacaggttgc-----tgatggaagaacagaag--accatgactctgccaggaaagccacttcagagaaaaggtggtaactcatggggtcttgaaggaagaaaaaggatcaATGT-CAACCATATATACCCTTCTAGAGTATGCAGAGAAAGTATCAA-ccatattttactaatgagaaaaccaagaatttgaaaaa-----------atgtat---tatgagtcgatggttccat i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20720926 1214 + 189454096 TGCCATAAGAAATTGAAATTATACAT---------TGCTAGTCTCATTAGAGAGTTCTGTCATATTAGGTGACACTAA----CAAGAAAAAAAATCCATGTCCAAAGGC----TAAAGCTATCAGGAGCATCTAGTTA----CAATGATC---------AAAGTGGTGATTAAAGAAAAATAACTATTTCTTGCCTGTTTAAAGCCATGCCATTACAACAGACTAATTGAAATG-TGAAGCAAAGATTATGTAGATTTTGC-TTGCTGGATGTTGTAATGTTAAGACTTTATTGATCAAAAAGAGGCAAGTAGTTTGTGAATAGTATTAGCAGTTCTTCTACTGGTTGGCAATTTATTTTCTGATACTGTGACTTACCGGAGCTTCATCATGCTGTAAAGTGTATTTCA---AGTCAAAAAAATTAAATTGAACCC-ACAATGCATAAGGGTCTT----TGTGCCTTTTAACCTagtgaataagaa-cataggct-ttggaatcaggagaaccttaatttacatataaacttaaccat-tgttttgaa------------------------------------------------------aaagac----------------aatca-------------------------------aattttctaagcct------------------------------------------------cag-ttttttcaactgt-aaaagtgggatattaacagccac-ctgaataagtc---gtttatgaccaaatggaatgaataccaggccatagaccagtaagtaccacataatcatcagcaaataaatggGGA-AA--ATAATTATAATAATAATCATCACCTC--TTtatcag---gctagaatggaa-------cttgaggttcatttaatccaa---gtctt--acaatttgaatgaggacactgag-tcacaaag-tggAAACAGTTTCAAAGTGCTTTTA----TTCATTTGATGATATGTTGTA-GACCCCCCATTTGT-AAGCTCTGTGGTAGGCACTGGCAAATGAAAGTATAAGTATTCACCATAT-ATGCATTCAC-----CATGTATGTATTCATACC-CAGACCCAT---TCA-AGGAATAATTGA----TGGCATCCCTTAAGTCCCTTAAGGAATTCAGAGTATACA------GAAGGACACACATGGTGAATTTTgtgctataatggagggctcaacaggttgc-----tgatggaagaacagaag--accatgactctgccaggaaagccacttcagagaaaaggtggtaactcatggggtcttgaaggaagaaaaaggatcaATGT-CAACCATATATACCCTTCTAGAGTATGCAGAGAAAGTATCAA-ccatattttactaatgagaagaccaagaatttgaaaaa-----------atgtat---tatgagtcgatggttccat i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16315019 1214 + 178775436 TGCCATaagaaattgaaatcatacat---------TGCTAGTCTCATTAGAGAGTTCTGTCATATTAGGTGACactaa----caagaaaaaaagtccatGTCCAAAGGC----TAAAGCTATCAGGAGCATCTAGTTA----CAATGATC---------AAAGTggtgattaaagaaaaataactatttcttgCCTGTTTAAAGCCATGCCATTACAACAGACTAATTGAAATG-TGAAGCAAAGATTATGTAGATTTTGC-TTGCTGGATGTTGTAATGTTAAGACTTTATTGATCAAAAAGAGGCAAGTAGTTTGTGAATAGTATTAGCAGTTCTTCTACTGGTTGGCAATTTATTTTCTGATACTGTGACTTACCGGAGCTTCATCATGCTGTAAAGTGTATTTca---agtcaaaaaaattaaattgaaccC-ACAATGCATAAGGGTCTT----TGTGCCTTTTCACCTAGTGAATAAGAA-Cataggct-ttggaatcaggaGAACCTTAATTTACATATAAACTTAACCAT-TGTTTTGAA------------------------------------------------------AAAGAC----------------AATCA-------------------------------aattttctaagcct------------------------------------------------cag-ttttttcaactGT-AAAAGTGGGATATTAACAGCCAC-CTGAATAAGTC--TGTTTATGACCAAATGGAATGAACACCAGGCCATAGACCAATAAGTACCACATAATCATTAGCaaataaatgggga-aa--ataattataataataatcatcaccTC--TTTATCAG---GCTAGAATGGAA-------CTTGAGGTTGATTTAATCCAA---GTCTT--ACAATTTGAATGAGGACACTGAG-TCACAAAG-TGGAAACAGTTTCAAAGTGCTTTTA----TTCATTTGATGATATGTTGTA-GACCCCCCATTTGT-AAGCTCTGTGGTAGGCACTGGCAAATGAAAGTATAAGTATTCACCATGT-ATGCATTCAC-----CATGTATGTATTCATACC-CAGACCCAT---TCA-AGGAATAATTGA----TGGCATCCCTTAAGTCCCTTAAGGAATTCAGAGTATACA------GAAGGACACACATGGTGAATTTTGTGCTATAATGGAGGGCTCAACAGGTTGC-----TGATGGAAGAACAGAAG--ACCATGACTCTGCCAGGAAAGCCACTTCAGAGAAAAGGTGGTAACTCATGGGGTcctgaaggaag-aaaaggatCAATGT-CAACCATACATACCCTTCTAGAGTATGCAGAGAAAGTATCAA-CCATATTTTACtaatgagaaaaccaagaatttgaaaaa-----------atgtat---tatgAGTCGATGATTCCAT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19804029 1214 - 48547382 TGCCATAAGAAATTGAAATTATACAT---------TGCTAGTCTCATTAAAGAGTTCTGTCATATTAGGTGACACTAA----CAAGAAAAAAAATCCATGTCCAAAGGC----TAAAGCTATCAGGAGCATCTAGTTA----CAATGATC---------AAAGTGGTGATTAAAGAAAAATAACTATTTCTTGCCTGTTTAAAGCCATGCCATTACAACAGACTAATTGAAATG-TGAAGCAAAGATTATGTAGCTTTTGC-TTGCTGGATGTTGTAACGTTAAGACTTTATTGATCAAAAAGAGGCAAGTAGTTTGTGAATGGTATTAGCAGTTCTTCTACTGGTTGGCAATTTATTTTCTGATACTGTGACTTACCAGAGCTTCATCATGCTGTAAAGTGTATTTCA---AGTCAAAAAAATTAAATTGAACCC-ATAATGCATAAGGGTCTT----TGTGCCTTTTAACCTAGAGAATaagaa-cataggct-ttggaatcaggagaaccttaatttacatataaacttaaccat-tgttttgaa------------------------------------------------------aaagac----------------aatca-------------------------------agttttctaagcct------------------------------------------------cag-ttttttcaactgt-aaaagtgggatattaacagccac-ctgaataagtc--tgtttatgaccaaatggaatgaataccaggccatagaccagtaagtaccacataatcatcagcaaataaatggGGA-AA--ATAATTATAATAATCATCATCACCTC--TTtatcag---gctagaatggaa-------cttgaggttcatttaatccaa---gtctt--acaatttgaatgaggacactgag-tcacaaag-tggAAACAGTTTCAAAGTGCTTTTA----TTCATTTGATGATATGTTGTA-GACCCCCCATTTGT-AAGCTCTGTGGTAGGCACTGGCAAATGAAAGTATAAGTATTCACCATAT-ATGCATTCAC-----CATGTATGTATTCATACC-CAGACCCAT---TCA-AGGAATAATTGA----TGGCATCCCTTAAGTCCCTTAAAGAATTCAGAGTATACA------GAAGGACACACATGGTGAATTTTgtgctataatggagggctcaacaggttgc-----tgatggaagaacagaag--accatgactctgccaggaaagccacttcagagaaaaggtggtaactcatggggtcttgaaggaag-aaaaggaTCAATGT-CAACCATACATACCCTTCCAGAGTATGCAGAGAAAGTATCAA-ccatattttactaatgagaaaaccacgaatttgaaaaa-----------atgtat---tatgggtcgatggttccat i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21156506 1219 - 190850796 TGCCAAA--AAACTAAAATTATACAT---------TGCTAGTCTAATCAGAGAGTTCTGTCATATTAGGTGACATTAAAGAGCAAAAAAAAAAATCCATGTCCAAAGGC----TAAGGCTATTAGGAGTATCTAGTTA----CGACAATC---------AAAGTGATGATTAAAGAAAAATAACTATTTCTTGCCTGTTTAAAGCCATGCCATTACAACAGACTAATTGAAATG-TGAAGCAAAGATTATGTAGATTTTGCTTTGCTGGATGTTGTAATGTTAAGACTTTGGTGATCAAAAAGAGTCAAGTAGCTTATGAATGGTATTAGCAGTTCTTCCATTGGTTGGCAACTTATTTTCTGATAGTATGACTTACCAGAGTTTCATCATGCTGTGAAATGTGTTTCA---AGTCAAAAAAATTAAACTGAACCC-ACACTGTATAAGTGTCTT----TGTacgatttaatgtagtgaataggaa-cataggct-ttggaatcagaagaaccttaatttacgtataatcttagccat-tgttttaaa------------------------------------------------------gaagac----------------aatca-------------------------------agttttctaagcct------------------------------------------------ctgtttttttcaactgt-aaaagtgggatattagcagccac-ctgaataaaccaccatatatgaccaaatggaatgaataccaggccacagaccagtaagcagcacataatcatcagcaaataaatgGGGA-Ga--ataattaaaataataattatCACCTC--TCTTAAAG---gctagaatggaa-------cttgaggttcattcaatccaa---atctt--acaatttgaatgaggacactgag-tcacaaag-tggAAACAGTTTCAAAGTGCTTTTA----TCCATTTGATGATATATTGTA-GACCCCCCATTTGTCAAGCTCTGTGGTAGGTACTGGCAAATGAAAGTATAACCATTCACCATGTAATGCATTCGC-----CATGTAAGGATTCATGCC-CAGACTCAT---TCA-AGGAATAATTGA----TCGGATCT-----GTCTCTTGAGGAGTTCAGAGTATATA------AAAGGACACACTTGGTGAATTTCAtgctatgatggagggcttaacaggttgt-----tgatggaagaacagaagacaccatgactttggccggaaagtcacttcagagaagaggtagtaacttatggggtcctgaaggaag-aaaaagaTTAATGT-CAACCATACataaccttacagagtatgcagagaaagtatcaa-ccatattttgctaatgagaataccaagaatttgaaaaa-----------atgtct---tattagttgatggtcccat i calJac3.chr3 C 0 C 0 s mm10.chr5 49143138 1287 + 151834684 TTC----------TCAAATAATACCTGCAATGCCATACTACATTCATTAAAGGATCTTGCCTAATCAGCTGACATTAG----TATGGAGGAATAACT-------AGGGA----TGATGTTTT--GGAACACCAGACTG----TGAAGATTTCTCAATCAAACGTGGTGCAATAAAGAAAACCATTATCTCCTGCCTGATTACAGACATTCTATTATAAAAAATTAATTGGGACG-CAAAGCAAAGACTATATGGAGTCCAA-----------------------------GGTGATCAAAGAGCAGCATGAAGGTTGTGT----TATTAACACCTCTTCT-----TTGGAAACTTAATCTCTAATA-----ACTTTGTAAACTCTATTCTTTTCATTAATCTCACT--G---GATCACTAAAATTAGATGAAACAT-TCAGTGAATAAACACTTTAATCTACATCTTTTTAGCTTCTTTGTATGAT-CATAGGCT--TGGAGTCAGGAG-GTCACAGTATACATTAGAACTTAATCAT-CTATTTTAATAGAATTTGATccagtagaatgatacagcagtgtaaaatgcgtatagatagcctaaagattgaatttaatcccagaaatcatatcgtggaaggaaagaactgatatccacaagattttctctgactgccatatatgcTACCTATGCACATGTTGATGTATGTACCTTCATTGTCCCT-TTTTATCAACTGT-AAAACTGGGGTATTAACATCTCA-GTAAATACATC--TATTTGTGACAATATGGATAGAATGCAAGACTCTAGGTAAGACTACAGCTCATAACTATTA-CTAATAAATGATAA-AATTATGAACACAGCAATTACTTATATTTTGATTTATAAT---GTTAGAGTGGAACTAAAGCCTAGAGGTTTAAAAAAGTCAAATTGTATC--ACATTGATAGTGAGAAGTCCAAGTTTGCTGAA-CCTGGGCAACTGCAAGTAACTTTTAG---TTCATTTCTTG---TGTCTGA-GTCT--------------CTTTGTAGTAGGCAGTGATAACTG----------CCTTCTCCATGA-ATACACGGACAGATGCATGGATACTTTTATACTACAGAGTTATCAGTCAGAATACTAAAAGAAAGTTCGCATCT-----GATCCTTGAGGAGTTCAGAGAAT-------------------CATAAT--------TGCTATAA-GAAGGGCCCAAGAGAATGCCTTCTTAGTGGAGGAGATTAGG----CAAGGCTCT-CTGGGAGTGTCACCTCACCAAAATGTGGATATAACAAGAAAT---GAAGAAAG-AAAAGGGGTAATGC-TAGACATAGTTA------TAAAATGAACAGA----ATAATAA-TCTTATTCTTCTAATGAGAA-ACCACAAACATGATGaa-----------atctctctgtgtctgtctctgtttctct i mm10.chr5 C 0 I 26 s canFam3.chr3 3740393 1161 - 91889043 --------------------------------------------------------------------------------TGTCAAAAGAAATATCTAGGTACAAAGGCATCACAAAGACATCAATGCCATTTACTTAGATGCCACATTC--------AAAAGCAGTGAGT-AGGGAAAACAATGATCTCTTGCCTGTTTAGAGCCACACTTTTATAATAAAGTAATTGGAATGAAGAAGCAAAGATTATGTAGATCGTGC-T---TTGGTGTTATGATGTTAAAACGGTGATGATCAAAAATAAGTAAGCAGTTTGTCGGCGGTATAAGCAGTGCTT--ACT--TTGGCCATTTATTCTTTGATGATGTGACTTCCTAAGCCCTTGTCATTCTATGTAATGTATTTCATTGAGGCAATAAAATCACTTTG----C-ACCATGCATATGAATCTTTCTCTCCACCGTTTCACCTACtggatgagaa-catgggct--tggaatcaaggggtccttaattcacacataagctctaccatctgccctgaa------------------------------------------------------caagac----------------agtca-------------------------------agttttctaaactt------------------------------------------------ctg-ttttctcatctggaaaaagaggggtaataaaaggtacaataaacaggtc--tatttatggctgaatggaatgactataaagctttagaacacaatgtggtacagaatcatcagcaaataaatgatGAGAA--ATAGTTATAATAAT-ATCATCACCTA--CTTTTAAGagtgctagaagggaa-------ctcagagttcattcaatccag---atttttcacaatttgcatgagaacactgaA-TTGCTTAGTTCTAAACAGTTTCAAAGCACTTTAAAAACTGACTTCAACCATATTTTGTAGGACCCACCATTTGTCAAGCTCAGTGGTAGGCAGTGGCAACTTGAAGTATATACATTCCGCATGA-ATGCATGTAC-------ACTACAGACTCATACC-CAGATTTGT---CTG-AGAACTAA--------TGACAGAT-----GTCCCTT---GAGTGCAGAGGGTACAATAGAGGAAGGACCCAAGTGATGCATCATGGAATGTAACGGAGGTCTCGGCAG--TGT-----TGATGGGAGAACAGAAGAAACAATGACTCTGCCATGAAAGCCACTTCACAGAAAAGGTGGTGACTTTTGGGGT-TTTAAGGAGG-AGAAGGAGCAATGTGGGaccatat----ccttgcaagataagcaga----gtattga-ctccattttattcatgagaaaaccaagaacttggaaaaaaaatatatatatatac---caattgtccaaggtcccat i canFam3.chr3 I 96 I 2 a score=145259.000000 s hg38.chr4_KI270790v1_alt 38414 43 + 220246 gatattttaggggcagaaatggaactaaaactcagggctTATC s panTro4.chr4 21425975 43 + 193495092 gatattttaggggcagaaatggaactaaaactcagggctTATC i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21602444 43 + 198332218 gatattttaggggcagaaatggaactaaaactcagggctTATC i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20214316 43 - 85365473 gatattttaggggcagaaatggaactaaaactcagggcttatc i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16679770 43 + 184069350 aacattttaggggcagaaatggaactaaaactcagggcttgcc i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20722140 43 + 189454096 gacattttaggggcagaaatggaactaaaactcagggcttgcc i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16316233 43 + 178775436 GACATTTTAGGGGCAGAAATGGAACTAAAACTCAGGGCTTGCC i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19805243 43 - 48547382 gacattttaggggcagaaatggaactaaaactcagggcttgcc i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21157725 43 - 190850796 gacattttaggggcagaaatggaaataaaactcagggcttaag i calJac3.chr3 C 0 C 0 s canFam3.chr3 3741556 43 - 91889043 gagatcaggggggcaaagttgggaataaaactctgttcctacg i canFam3.chr3 I 2 C 0 e mm10.chr5 49144425 26 + 151834684 I a score=71393.000000 s hg38.chr4_KI270790v1_alt 38457 22 + 220246 ATCTGTATCTCTTACTACTTCT s panTro4.chr4 21426018 22 + 193495092 ATCTGTATCTCTTACTACTTCT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21602487 22 + 198332218 ATCTGTATCTCTTACTACTTCT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20214359 22 - 85365473 atctgtatctcttactactttt i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16679813 22 + 184069350 atccatatctcttactacctct i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20722183 22 + 189454096 atccatatctcttactacctct i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16316276 22 + 178775436 ATCCATCTCTGTTACTACCTCT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19805286 22 - 48547382 atccatgtctcttactacctct i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21157768 22 - 190850796 atctatatctcttgctacttcc i calJac3.chr3 C 0 C 0 s mm10.chr5 49144451 22 + 151834684 ctctctgtctctctctgtctct i mm10.chr5 I 26 C 0 s canFam3.chr3 3741599 22 - 91889043 actcATTTCTACCAATACATCT i canFam3.chr3 C 0 I 365 a score=2811313.000000 s hg38.chr4_KI270790v1_alt 38479 729 + 220246 A---TTCTTTCTCCCATTCTCT-------------------------------------------------CACATGAATAATATCTAAGTTTGCAGAAAGAAATT-AGTTCAGCAGTTTAATTACACTGTGGATAAC-TT-----------TTAATTTATTCATTTCTCAT---------GGAATTATTTCCTCTTGCTTGATTTATGCCCTTACTTGATCTATTTCATTTTACTTTGATTTTCCCCTTTGTAATCAGATGATGCATCTTTGATAATATTTCATTCTCT--TTCTGTATATAGC-CATTTGTTTTTCTCCCCCT---GGAGAACTAATTCATATATATTCTAAAAATAAGCAAATAGTGTAAATGCAAATGGGCTTCAAATGATACTTTACAAGCGCCTAAATTGAACTTTGTTTCAC---TTG-TATCCTGATGCAAAATGTTCCTAACTTTAAGATCATCTCCCATAGGGCCATTCCAATTGTAAAATGAACTCTGCATCTGATTTTCAGATTATTGGATCTACATATTTACCATAACTCTGATTAAAGGCCTTTGAAGCAAATGGACCATAGCT-GTTTTTGCAATTGAGCCTTATTAAAATTTAAAGTGTATCCGTAAACATGTAAGTGCCTATTATAGATCAAAGTTCAGAAAATTAAATATTCACAAATACAGCTCATTTTACAAAAACTACAGACTTGAAATTA-TCTAAGCCAAATAATCTTAGCACTTACCA-CAAAATAGCCTTAGTTATTTCAGCAGCA---AGATTTTATTTATGTTAAGCAAC--TTTTTGTGACTT s panTro4.chr4 21426040 731 + 193495092 A---TTCTTTCTCCCATTCTTT-------------------------------------------------CACACGAATAATATCTAAGTTTGCAGAAAGAAATT-AGTTCAGCAGTTTAATTACACTGTGGATAAC-TT-----------TTAATTTATTCATTTCTCAT---------GGAATTATTTCCTCTTGCTTGATTTATGCCCTTACTTGATCTATTTCATTTTACTTTGATTTTCCCCTTTGTAATCAGATGATGCATCTTTGATAATATTTCATTCTCT--TTCTGTATATAGC-CATTTGTTTTTCTCCCCCT---GGAGAACTAATTCATATATATTCTAAAAATAAGCAAATAGTGTAAACGCAAATGGGCTTCAAATGATACTTTACAAGCGCCTGAAGTGAACTTTGTTTCAC---TTG-TATCCTGATGCAAAATGTTCCTAACTTTAAGATCATGTCCCATAGGGCCATTCCAATTGTAAAATGAACTCTGCATCTGATTTTCAGGTTATTGGATCTACATATTTACCATAACTCTGATTAAAGGCCTTTGCAGCAAATGGACCATAGCT-GTTTTTGCAATTGAGCCTTATTAAAATTTAAAGTGTATCCATAAACATGTAAGTGCCTATTATAGATCAAAGTTCAGAAAATTAAATATTCACAAATACAGCTCATTTTACAAAAACTACAGACTTGAAATTA-TCTAAGCCAAATAATCTTAGCACTTACCA-CAAAATAGCCTTAGTTATTTCAGCAGCA---AGATTTTATTTATGTTAAGCAACTTTTTTTGTGACTT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21602509 727 + 198332218 A---TTCTTTCTCCCATTCTCT-------------------------------------------------CACACGAATAATATCTAAGTTTACAGAAAGAAATT-AGTTCAGCAGTTTAATTACACTGTGGATAAC-TT-----------TTAATTTATTCACTTCTCAT---------GGAATTATTTCCTCTTGCTTGATTTATGCC----CTTGATCTATTTCATTTTACTTTGATTTTCCCCTTTGTAATCAGATGATGCATCTTTGATAATATTTCATCCTCT--TTCTGTATATAGC-CATTTGTTTTTCTCCCCCT---GGATAACTAATTCATATATATTCTAAAAATAAACAAATAATGTAAATGCAAATGGGCTTCAAATGGTACTTTACAAGCGCCTAAATTGAACTTTGTTTCAC---TTG-TATCCTGATGCAAAATGTTCCTGACCTTAAGATCACGTCCCATAGGGCCATTCCAATTGTAAAATGAACTCTGCATCTGATTTTCAGGTTATTGGATCTACATGTTTACCATAACTCTGATTAAAGGCCTTTGCAGCAAATGGACTATAGCT-GTTTTTGCAATTGAGCCTTATTAAAATGTAAAGTGTATCCATAAACATGTAAGTACCTATTATAGATCAAAGTTCAGAAAATTAAATATTCACAAATACAGCTCATTTTACAAAAACTACAGACTTGAAATTA-TCTAAGCCAAATAATCTTAGCACTTACCA-CCAAATAACCTTAGTTATTTCTGCAGCA---AGATTTTATTTATGTTAAGCAACTTTTTTTGTGACTT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20214381 730 - 85365473 a---ctctttctcccattctcc-------------------------------------------------caCACGAATAATATCTAAGTTTGCAGAAAGAAAGT-AGTTCAACAGTTTAATTACACTGTGGATAAC-TT-----------TTAATTTATTCATTTCTCAT---------GGAATTATTTCCTCTTGCTTGATTTATGCCCTTACTTGATCTATTTCACTTTACTTTGATTTTCCCCTTTGTAATCAGATAATGCATCTTTGATAATATTTCATTCTCT--TTCTGTGTATAGC-CATTTGTTTTTCTCCCCGT---GGAGAACTAATTCATATATATTCTAAAAATAAGCAAATAATATAAATGCAAATGGGCTTCAAATGATAATTTACAAGCACCTAAATTGAACTTTGTTTCAC---TTG-TATCCTGACGCAAAATGTTCCTGACCTTAAGATCATGTCCCACAGGGCCATTCCAATTGTAAAATGAACTCTGCATCTGATTTTCAGGTTATTGGATCTACATGTTTACCATAACTCTGATTAAAGGCCTTTGTAGCAAATGGACCATAGCT-GTTTTTGCAATTGAGCCTTATTAAAATTTAAAGTGTATCCATAAACATGTAAGTGCTTATTATAGATCAAAGTTCAGAAAATTAAATATTCACAAATACAGCTCATTTTAC-AAAACTACAGACTCGAAATTA-TCTAAGCCAAATAATCTCAGCACTTAACA-CCAAATAGCCTTAGTTATTTCTGCAGCA---AGATTTTACTTATGTTAAGCAACTTTTTTTGTGACTT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16679835 736 + 184069350 a---ctcTTTCTCCCATTCTCC-------------------------------------------------CACACAAATAATATCTACGTTTGCAGAAAGAAGTT-AGTTCAGCAGTTTAATTACACTGTGGATAAC-TT-----------TTAATTTATTCATTTCTCAT---------GAAATTATTTCCTCTTGCTTGATTTATGCCCTTGCTTGATCTATTTCATTTTACTTTGATTTTCTCCTTTGTAATCAGATGATACATCTTTGATAATATTTCATTCTCT--TTCTGCATATAGC-CATTTGTTTTTCTCCCCCCC-TGGAGAACTAATTCATATATATTCTAAAAATAAGCAAATAATGTAAATGCAAATGGGCTTCAAATGATACTTTACCAGCACCTAAATTGAACTTGGTTTCACTTTTTG-TATCCTGATGCAAAATGTTCCTGACCTTAAGAACATGTCCCATAGGGCCATTCCAATTGTAAAATGAACTCTGCATCTGATTTTCAGGTTATTGGATCTACATGTTTACCATAACTCTGATTAAAGGCTTTTGCAGCAAATGGACCATAGCT-GTTTTTGCAATTGAGCCTTATTAAAATTTAAAGTGTATCCATAAACATGTAAATGCCTATTATAGATCAAAGTTCACAAAATTAAATATTCACAAATACAGCTCATTTTAC-AAAACGACAGACTTGAAATTA-TCTAAGCCAAATAACCTTAGCACTTACCACCCAAATAACCTTAGTTATTTCTGCAGCAAGTAGATTTTGTTTATGTTAAACAACTTTTT---TGACTT i rheMac3.chr5 C 0 I 457 s macFas5.chr5 20722205 736 + 189454096 a---ctcTTTCTCCCATTCTCC-------------------------------------------------CACACAAATAATATCTACGTTTGCAGAAAGAAGTT-AGTTCAGCAGTTTAATTACACTGTGGATAAC-TT-----------TTAATTTATTCATTTCTCAT---------GAAATTATTTCCTCTTGCTTGATTTATGCCCTTGCTTGATCTATTTCATTTTACTTTGATTTTCTCCTTTGTAATCAGATGATACATCTTTGATAATATTTCATTCTCT--TTCTGCATATAGC-CATTTGTTTTTCTCCCCCCC-TGGAGAACTAATTCATATATATTCTAAAAATAAGCAAATAATGTAAATGCAAATGGGCTTCAAATGATACTTTACCAGCACCTAAATTGAACTTGGTTTCACTTTTTG-TATCCTGATGCAAAATGTTCCTGACCTTAAGAACATGTCTCATAGGGCCATTCCAATTGTAAAATGAACTCTGCATCTGATTTTCAGGTTATTGGATCTACATGTTTACCATAACTCTGATTAAAGGCTTTTGCAGCAAATGGACCATAGCT-GTTTTTGCAATTGAGCCTTATTAAAATTTAAAGTGTATCCATAAACATGTAAATGCCTATTATAGATCAAAGTTCACAAAATTAAATATTCACAAATACAGCTCATTTTAC-AAAACTACAGACTTGAAATTA-TCTAAGCCAAATAACCTTAGCACTTACCACCCAAATAACCTTAGTTATTTCTGCAGCAAGTAGATTTTGTTTATGTTAAACAACTTTTT---TGACTT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16316298 736 + 178775436 A---CTCTTTCTCCCATTCTCC-------------------------------------------------CACACAAATAATATCTACGTTTGCAGAAAGAAGTT-AGTTCAGCAGTTTAATTATACTGTGGataac-tt-----------ttaatttattcatttctcat---------gAAATTATTTCCTCCTGCTTGATTTATGCCCTTGCTTGatctatttcattttactttgattttctcctttgtaatcAGATGATACATCTTTGGtaatatttcattctct--ttctgcATATAGC-CATTTGTTTTTCTccccccc--GGAGAACTAATTcatatatattctaaaaataagcaaataatgtaAATGCAAATGGGCTTCAAATGATACTTTACCAGCACCTAAATTGAACTTGGTTTCACTTTTTG-TATCCTGATGCAAAATGTTCCTGACCTTAAGAACATGTCCCATAGGGCCATTCCAATTGTAAAATGAACTCTGAATCTGATTTTCAGGTTATTGGATCTACATGTTTACCATAACTCTGATTAAAGGCTTTTGCAGCAAATGGACCATAGCT-GTTTTTGCAATTGAGccttattaaaatttaaagtgtATCCATAAACATGTAAGTGCCTATTATAGATCAAAgttcacaaaattaaatattcacaAATACAGCTCATTTTAC-AAAACGACAGACTTGAAATTA-TCTAAGCCAAATAACCTTAGCACTTACCA-CCAAATAACCTTAGTTATTTCTGCAGCAAGtagattttatttatgttaaacaACTTTTT-TGTGACTT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19805308 736 - 48547382 a---ctcTTTCTCCCATTCTCC-------------------------------------------------TACACGAATAATATCTACGTTTGCAGAAAGAAGTT-AGTTCAGCAGTTTAATTACACTGTGGATAAC-TT-----------TTAATTTATTCATTTCTCAT---------GAAATTATTTCCTCTTGCTTGATTTACGCCCTTGCTTGATCTATTTCATTTTACTTTGATTTTCTCCTTTGTAATCAGATGATACATCTTTGATAATATTTCATTCTCT--TTCTGCATATAAC-CATTTGTTTTTCTCCCCCCT--GGAGAACGAATTCATATATATTCTAAAAATAAGCAAATAATGTAAATGCAAATGGGCTTCAAATGATACTTTACCAGCACCTAAATTGAACTTGGTTTCACTTTTTG-TATCCTGATGCAAAATGTTCCTGACCTTAAGATCATGTCCCACAGGGTCATTCCAATTGTAAAATGAACTCTGCAACTGATTTTCAGGTTATTGGATCTACATGTTTACCATAACTCTGATTAAAGGCTTTTGCAGCAAATGGACCATAGCT-GTTTTTGCAATTGAGCCTTATTAAAATTTAAAGTGTATCCATAAACATGTAAGTGCCTATTATAGATCAAAGTTCACAAAATTAAATATTCACAAATACAGCTCATTTTAC-AAAACTACAGACTTGAAATTA-TCTAAGCCAAATAACCTTAGCACTTACCA-CCAAATAACCTTAGTTATTTCTGCAGCAAGTAGATTTTATTTATGTTAAACAACTTTTT-TGTGACTT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21157790 731 - 190850796 a---ctCTTTCTTCCATTCTCC-------------------------------------------------CACACAAATAATATCTAAGTTTGCAGAAAGAAAAT-AGTTCAGCAGTTTAATTACACTGTGGATAAC-TT-----------TTAATTTATTCATTTCTCAT---------GGAATTATCTCCTCTTGCTCGATTTATGCCCTTACCTGATCTATTTCATTTTCCTTCTACTTTCTCCTTTGTAATCAGATGATGTGTCTTTGACAATATTTCATTCTCT--TTCTGTATATAGC-CATTTGTTTTTCTCCCCT----GGAGAACTAATTCATATATATTCTAAATATAAGCAAATAATGTAAATGCAAATGGGCTTCAAATGATACTTTACCAGCACCTAAATTGAACTC-ATTTCACTTGTTG-TATCCTGATGCAAAATGTTCTTGACCTTAAGATCATATTCCACAGGGCCATTCCAATTGTAAAATGAACTCTGCATCTGATTTTCAGGTTATTGGATCTACATGTTTACCATAACTCTGATTAAAGGCCTTTGCAGCAAATGGACCATAGCT-GTTTTTGCAATTGAGCCTTATTAAAATTTAAAGTGTATCCATAAACATGTAAGTGCCTATTATAGATCAAAGTTCAGAAAATTAAATATTCACAAATGCAGCTCGTTTTAC-AAAAC--CAGACTCAAAATTA-TCTAAGCCAAATAACCTTAGCACTTACCA-CCAAATAACCTTAGTTATTTCTGCAGCAAGTAGATTTTATTTATGTTAAGTGATTTCTT-TGTAACTT i calJac3.chr3 C 0 C 0 s mm10.chr5 49144473 775 + 151834684 ctgtctctctctctctttctctctgtGTGTACTCCATTATTAATTTATGACATTAAGGAGTTCCCATTCCACATACAAACAACATCTAAGTTTGCAGAAACAGCTTAAGCTCCACAATTCAGTCCCA-TGTGGAAGCCATT-----------TTAATTCTTTTCACTTTTAT---------AGAATTCTCTCCTCTCATTTAATCTATGCCATTCTTGTGTCTATTTCATGTTA-TTTGACTTTC-CTTCCCTAATCAGATTATGT-TCTTTGGGACTATTTCCCTGTGTTATTTTACATATAAC-AATTTACCATTCTTCTCTAGGGGGAAGATTGATGCTTGT---TTCCATAAATCAGCAAATACTGTAAGTGAAAATAGGATTCCCAGAATATCTTCATAGATACTAAGTTGAACTTTGTCTCAT---TTGATACTCTGATATGCACTG-CCCTGACCTCGAG--------CCATTGGGTCATCCCATTTACAAAATGCACTCTGCATCTGATTTTGAGATTACTTCATGTGCACCTTTACCATAGCGTCTATGAAAGGACCTTAGATGAAATGAACCAAGTATGGCTTTTGCAACTGAACCTTATTAAATTTTAAAGTATATCCATAAGTATATAAGTTCCTATTATGGATCAACGCTCAGAAAA-TAAATATTCACAAATACAGCTCATTTTAC-AGAACCACGGATTCAGAGTTA-TCTAAGCAAAACAAGCTTAGCACTTACTA-CCACTTAAGTTTAATTATTTCTAAATTGAGAAGGCTGTAGTAATACTAAAAAAACACTTCTGT--TTT i mm10.chr5 C 0 C 0 s canFam3.chr3 3741986 755 - 91889043 A---CTCTTTCTTCCATTGTCC-------------------------------------------------CAAACATGTAATATCTAAGTTTGCAAAAAGAAATA-A--CCACCAGTTTACCTTCACAGGGGActtt-tttttttttttacttagtttcttcatttctttttttttttccagattttttccctcttatttgatttatgcctttacttg-tagatttaattttattttgacttttCCCTTCTTAATTGGGTGATGCTCCTTTGAGAATATTTAATTCTAT--CTTTGTACATAGTAAATTTGGCCCCCTCACTCCC--GGAGAACTAGTTTATGTATATTCTAAAAATAAGCAAATAATGTCAATGCAAATGGGCTTCCAATGATACTTCACAGGGGTCTCAATTGACCTTTTCTTCTCTCAGTG-TTATGCAATGCACAATG-TCCTGACCTCAAGGTCATGCTCCATTGGGTTATTCTAATTGTAAAATGAACTCTGCATCTAATTTCCAGATTATTGGATCTCCATGTTTATCATAACTCTGATTAAAGGCCCTTGCAGCAAATGGACCATTGCT-GTTTTTGCAATTGAACCTTATTAAAATTTAAAGTGTATCCATAAATACATAAGTGCTTATTATAGATCAAAGTTCTGAAAATTAAATATTCACAAATACAGCTCATTTTAC-AAAATCAGAGACTCAAAATTACTGAAAGCCAGATAATCTTAACACCCGGTA-CCAAATAACCTTAGTTATTTCTGCAGTGACTGTACTGTGTTTATGTGAAACAGCTGCTTTTGCAGCTT i canFam3.chr3 I 365 C 0 a score=918733.000000 s hg38.chr4_KI270790v1_alt 39208 265 + 220246 GAGCAAAGGTTTTATTTTA------------CCTGGA--AAACT--CAGCATAT-ATAGCTCTTACTCATGGAACACTGTTGTAATATTAAGATATAAA-AATGATAAAGTACCACCTCACATTATATCATTT-AATGCATCAGCAATGAAACCATTTGGGGTTTATTTATTTTGC----TGATTGACTTGATTCCCTTCCTTTGGAGAGGTTAATAAAGTTGGGCATA-----TTTCATGATTATTCAAATAAGATAGCAAACTTTAATTTC--TGTAACCCTCTAGGAGGGTT s panTro4.chr4 21426771 251 + 193495092 GAGCAAAGGTTTTATTTTA------------CCTGGA--AAACT--CAGCAAAT-ATAGCTCTTACTCATGGGACACTGTTGTAATATTAAGATATAAA-AATGATAAAGTACCACCTCACATTATATCATTT-AATGCATCAGCAATGCAACCATTTGGGGTTTATTTATTTTGC----TGATTGACTTGATTCCCATCCTTTGGAGAGGTTAATAAAGTTGGGCATA-----TTTCATGATTATTCAAATAAGATAGCAAACTTTAATTTC--TGTAAC-------------- i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21603236 265 + 198332218 AAGCAAAGGTTTTATTTTA------------CCTGGA--AAACT--CAGCAAAT-ATAGCTCTTACTCAAGGAACACTGTGGTAATATTAAGATATAAA-AATGATAAAGTACCACCTAACATTATATCATTT-AATGCATCAGCAATGAAACCATTTGGGGTTTATTTATTTTGC----TGATTGACTTGATTCCCATCCTTTTGAGAGGTTAATAAAGTTGGGCATA-----TTTCACGATTATTCAAATAAGACAGCAAACTTTAATTTC--TGTAACGATCTAGGAGGGTT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20215111 266 - 85365473 GAGCAAAGGTTTTATTTTA------------CCTGGA--AAACT--CAGCAAAT-ATAGCTCTTACTCAAGGAACACCGTTGTAATATTAAGCTATAAA-AATGATAAAGTACCACCTAACATTATATCATTT-AATGCATCAGCAATGAAACC-TTTGGGGTTTATTTATTTTGC----TGATTGACTTGATTCCCATCCCTTGGAGAGGTTAATAAAGTTGGGCATA-----TTTCATGATTATTCAAATAAGATAGCAAACTTTAATTTCTGTGTAATCCTCTAGGAGGGTT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16681028 269 + 184069350 GAGCAAAGGTTTTATTTTA------------CCTGGA--AAACT--CAGCAAAT-ATAGCTCTTACTCATGGAACACAGTTGAAATACTAAGATATAAA-AATGATAAAGTACCACCTAACATTATATTATTT-AATGCATCAGCAATGAAACCATTTGAGAATTATTTATTTTGCTGATTGATTGACTTGATTCCCATCCTTTCGAGAGGTTAATAAAGTTGGGCATA-----TTTCATGATTATTCAAATAAGATAGCAAACTTTAATTTC--TGTAACCCTCTAGGAGGGTT i rheMac3.chr5 I 457 C 0 s macFas5.chr5 20722941 269 + 189454096 GAGCAAAGGTTTTATTTTA------------CCTGGA--AAACT--CAGCAAAT-ATAGCTCTTACTCATGGAACACAGTTGAAATACTAAGATATAAA-AATGATAAAGTACCACCTAACATTATATTATTT-AATGCATCAGCAATGAAACCATTTGAGAATTATTTATTTTGCTGATTGATTGACTTGATTCCCATCCTTTCGAGAGGTTAATAAAGTTGGGCATA-----TTTCATGATTATTCAAATAAGATAGCAAACTTTAATTTC--TGTAACCCTCTAGGAGGGTT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16317034 269 + 178775436 GAGCAAAGGTTTTATTGTA------------CCTGGA--AAACT--CAGCAAAT-ATAGCTCTTACTCATGGAACACAGTTGAAATACTAAGATGTAAA-AATGATAAAGTACCACctaacattatattattt-aatgcaTCAGCAATGAAACGATttgagaattatttattttgctgattGATTGACTTGATTCCCATCCTTTCGAGAGGTTAATAAAGTTGGGCATA-----TTTCATGATTATTCAAATAAGATAGCAAACTTTAATTTC--TGTAACCCTCTAGGAGGGTT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19806044 265 - 48547382 GAGCAAAGGTTTTATTTTA------------CCTGGA--AAACT--CAGCAAAT-ATAGCTCTTACTCATGGAACACAGTTGAAATACTAAGATATAAA-AATGATAAAGTACCACCTAACATTATATTATTT-AATGCATCAGCAATGAAACCAGTTGAGATTTATTTATTTTGC----TGATTGACTTGATTCTCATCCTTTCGAGAGGTTAATAAAGTTGGGCATA-----TTTCATGATTATTCAAATAAGATAGCAAACTTTAATTTC--TGTAACCCTCTAGGAGGGTT i chlSab2.chr27 C 0 I 30 s calJac3.chr3 21158521 266 - 190850796 GAGCAAAGGTGTTATTTTA------------CCTGGA--AAACT--CAGCAAATAATAGGTCTTATTCATGGAACACTGTTGTAATATTAATATCTAAA-AATGATAAAGTACCACCTAACACTATATTATTC-AATGCAGCAGCAATTACACCATTTGGGGTTTATTTATTTCAC----TGATTGACTTGATTCTCATCCTTTGGAGATGTTAATAAAGTTGGGCATA-----TTTCATGATTATTCAAATAATATAGCAAAATTGAGTTTC--TGGAACTCTCTAGGAGGGTT i calJac3.chr3 C 0 C 0 s mm10.chr5 49145248 265 + 151834684 --------GTTTTGTTTTAACATCAGAAAATCCTGGAGGAGACTGACAGCAAAC-ACAGCTCTTATTCACAGTACAACACTGTAGTGTTAATATCTGTA-GCAACTTAA--ACCATGATAAGTTAGGGTATTT-AATGTACAAGCAA-GAATATGTGTCAAGTCATCCTATTTCAG----TGACTTGGTTTATGCTCATCAC----ATAGGTTAATAAAATCATACAGA-----ATCC-TGATTATTCAAAGACAGCAACAAGCTTTAATTTC--TGTACCTCTTCAAGAAGATT i mm10.chr5 C 0 I 4 s canFam3.chr3 3742741 272 - 91889043 GAGGAGACATTTTCTTTTA------------TTTGGG--GAACT--CACAAAAT-ATAGCTCTCATTCATGGGATGCTGTGGTGACGTTAATGTCTAAACAACAGTAAAGTCCCACCTAATATTATTTTTTTTGAATGGATCAGCAAGGATACCATTTGGGTTTTATTTACTTCAC----TGATGAGCTTGATTCTCAGCGTGTGACAAGGTGAATCAATTTGGGCACATTTGTTTTTATGATTATTCACAGAGTATAGCAATCTTTGATTCC--TGTAATCTTCTATAAAGTTT i canFam3.chr3 C 0 C 0 a score=11459.000000 s hg38.chr4_KI270790v1_alt 39473 6 + 220246 CAGCCA s panTro4.chr4 21427022 6 + 193495092 CAGCCC i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21603501 6 + 198332218 CAGCCA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20215377 6 - 85365473 CAGCCA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16681297 6 + 184069350 CAGCCA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20723210 6 + 189454096 CAGCCA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16317303 6 + 178775436 CAGCCA i papAnu2.chr5 C 0 C 0 s calJac3.chr3 21158787 6 - 190850796 CAGCTA i calJac3.chr3 C 0 C 0 s mm10.chr5 49145517 2 + 151834684 TA---- i mm10.chr5 I 4 I 1 s canFam3.chr3 3743013 6 - 91889043 CAGGCG i canFam3.chr3 C 0 C 0 e chlSab2.chr27 19806309 30 - 48547382 I a score=3015137.000000 s hg38.chr4_KI270790v1_alt 39479 855 + 220246 ACAAGTACAATACTGTGTGCTGTTTTAGGATGTTTAGATTGGTGCCTCCACAAATGAAAAATGAGGCCTTGTATTTGTTGATAGCAAGTAGATTG----TACTGCAGAATTAAAA-GGAAAGAAATCAATGCTGCCAAAATAAAACA----ATACAATTAGAACCACATTTTGACTTGTCTCAGAAACA---TTTTTTGGTATTAAAGTTATTGGGCTATTAAATTGCGTGGGGAAAAATAATAGAGCTCATTACATGGAGTGTTCTGCTTTGCCACAGCTGGAGTCTGGATTGCACACTTTAATATTACTTACATGTACTGGAGC-AAGCTGAAGAAATACAGATTAT---TAAG-AAATAACCTTTTCCATTAGGGGAGCTTCAAAGTCCTCAGGACCTTTTGGGGGTATTAGTGGGAATATAAAGAAGAATGAAGTATCTTTTTGCCACGCATTTTCCAATGTGAACAATAAAATCTATTAAAAAGTTTGTTTCTGTTTCAATATATTTCCCTGATA------GAAAGAAAAGAAAGAGGGAGTTTAAGGGAGAACCGATTAAAGACTAAAAATAGAAGGGATGGAACTACAATTTCC-------TTAGATAGCAT------TGAGAC-----------AGACAACTCTGTTTGATCAT-T---TAAGGCCAAAGATTAAAT-GGTAACT-CAGA-AATTTTTA-ATTATT------TC----CCTCAACAATAATTTCAGAAACAACTCATAGGACTTG-TCTTTTTACT-------TGTGGCCATTTAAATGATGGTGGGCAGCAGCAGTTCTATTGTTTTTCCTTATTTTGGGGAGTGGACCGGTTTTATGCATACT--GTCT-TCCACTAAAAAAA---TCAGACAAAAAA-G--TTAAAAAAAGCT---GTTAAGGCAATTAAATTACTTAC s panTro4.chr4 21427028 854 + 193495092 ACAAGTACAATACTGTGTGCTGTTTTAGGATGTTTAGATTGGTGCCTCCACAAATGAAAAATGAGGCCTTGTATTTGTTGATAGAAAGTAGATTA----TACTGCAGAATTAAAA-GGAAAGAAATCAGTGCTGCCAAAATAAAACA----ATACAATTAGAACCACATTTTGACTTGTCTCAGAAACA---TTTTTTGGTATTAAAGTTATTGGGCTATTAAATTGCGTGGGGAAAAATAATAGAGCTCATTACATGGAGTGTTCTGCTTTGCCACAGCTGGAGTCTGGATTGCACACTTTAATATTAGTTACATGTACTGGAGC-AAGCTGAAGAAATACAGATTAT---TAAG-AAATAACCTTTCCCATTAGGGGAGCTTCAATGTCCTCAGGAACTTTTGGGGGTATTCGTGGGAATATAAAGAAGAATGAAGTATCTTTTTGCCACGCATTTTCTAATGTGAACAATAAAATCTATTAAAAAGTTTGTTTCTGTTCCAATATCTTTCCCTGATA------GAAAGAAAAGAAAGAGGGAGTTTAAGGGAGAACCGATTAAAGACTAAAAATAGAAGGGATGGAACTACAATTTCC-------TTAGATAGCAT------TGAGAC-----------AGACAACTCTGTTTGATCAC-T---TAAGGCCAAAGATTAAAT-GGTAACT-CAGA-AATTTTTA-ATTATT------TC----CCTCAACAATAATTTCAGAAACAACTCATAGGACTTG-TCTTTTTACT-------TGTGGCCATTTAAATGATGGTGGACAGCAACAGTTCTGTTGGTTTTCCTCATTTTGGAAAGTGGACTGGTTTTATGCATACT--GTCT-TCCACTAAAAAAA---TCAGAC-AAAAA-G--TTTAAAAAAGCT---GTTAAGGCAACTAAATTACTTAC i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21603507 856 + 198332218 ACAAGTACAATACTGTGTGCTGTTTTAGGATGTTTAGATTGTTGCCTCCACAAATGAACAATGAGGCCTTGTATTTGTTGATAGCAAGTAGATTG----TACTGCAGAATTAAAA-GGAAAGAAATCAATGCTGCCAAAATAAAACA----ATACAATTAGAACCACATTTTGACTTGTCTCAGAAACA---TTTTTTGGTATTAAAGTTATTGGGCTATTAAATTGCATGGGGAAAAATAATAGAGCTCATTACATGGAGTGTTCTGCTTTGCCACAGCTGGAGTCTGGATTGCACACTTTAATATTAGTTACATGTACTGGAGC-AAGTTGAGGAAATACAGATTAT---TAAG-AAACAACCTTTCCCATTAGGGGAGCTTCAATGTCCTCAGGACCTTTTGGGGGTATTAGTGGGAATATAAAGAAGAATGAAGTATCTTTTTGCCACACATTTTCC-ATATGAACAATAAAATCTATTAAAAAGCTTGTTTCTGTTTCAATATCTTTCCCTGATA------GAAAGAAAAGAAAGAGGGAGTTTAAGGGAGAACTGATTAAAGACTGAAAATAGAAGGGATGGAACTACAATTTCC-------TTAGATAGCAT------TGAGAC-----------AGACAACTCTGTCTGATCGT-TTGATAAGGCCAAAGATTAAAT-GGTAACT-CAGA-AATTTTTA-ATTA-T------TC----CCTCAACAATAATTTCAGGAACAACTCATAGGACTTG-TCTTTTTACT-------TGTGGCCATTTAAATGATGGTGGACAGCAACAGTTCTATTGGTTTTCCTCATTTTGGGGAGTGGACCGGTTTTATGCATACT--GTCT-TCCACTAAAAAAA---TCAGACAAAAAA-G--TTAAAAAAAGCT---GTTAAGGCAATTAAATTACTTAC i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20215383 856 - 85365473 ACAAGTACAATACTGTGTGCTGTTTTAGGATGTTTAGATTGGTGCCTCCACAAATGAACAATGAGGCCTTGTATTTGTTGATAGCAAGTAGATTG----TACTGCAGAATTAAAA-GGAAAGAAATCAATGCTGCCAAAATAAAACA----ATACAATTAGAACCACATTTTGACTTGTCTCAGAAACA---TTTCTTGGTATTAAAGTTATTGGGCTATTAAATTGCATGGGGAAAAATAATAGAGCTCATTACATGGAGTGTTCTGCTTTGCCACAGCTGGAGTCTGGATTGCACACTTTAATATTAGTTACATGCATTGGAGC-AAGTTGAGGAAATACAGATTAT---TAAG-AAATAACCTTTCCCATTAGGGGAGCTTCAATGTCCTCAGGACCTTTTGGGGGTATTAGTGGGAATATAAAGAAGAATGAAGTATCTTTTTGCCACGCATTTTCCAATGTGAACAATGAAATCTATTCAAAAGTTTGTTTCTGTTTCAATATCTTTCCCTGATA------GAAAGAAAAGAAAGAGGGAGTTTAAGGGAGAACCCATTAAAGACTAAAAATAGAAGGGATGGAACTGCAATTTCC-------TTAGATAGCAT------TGAGAC-----------AGACAACTCTGTTTGATCAT-TTGATAAGGCCAAAGATAAAAT-GGTAACT-CTGA-GATTTTTA-ATTA-T------TC----CCTCAACAATAATTTCAGAAACAACTCATAGGACTTG-TCTTTTTACT-------TTTGGCCATTTAAATGATGGTGGACAGCAGCAGTTCTATTGGTTTTCCTCATTTTGGGGAGTGGACCAGTTTTATGCACACT--GTCT-TCCACTAAAAAAA---TCAGACAAAAAA-G--TTTAAAAAAGCTAACGTTAAGGCAATTAAA----TTAC i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16681303 858 + 184069350 ACAAGTACAATACTGTGTGCTGTTTTAGGATGTTCAGATTGGTGCCTCCACAAATGAACAAAGAGGCCTTATATTTGTTGATAGCAAGTAGATTG----TACTGCAGAATTGAAG-GGAAAGAAATCGACGCTGCCAAAAGGAAACA----ATACAATTAGAACCACATTTTGACTTGTCTCAAAAACA---TTTTTTGGTATTAAAGTTACTGGGCTATTAAATTGCATGGGGAAAAATAATAGAGCTCATTATAAGGAGTGTCCTGCTTTGCCACAGCTGGAGTCTGGATTGCACACT----TATTAGTTACATGCACTGGAGC-AAGTTGAGGAAATACAGATTAT---AAAGAAAATAACCTTTCCCATTAGAGGAACTTCAATGTCCTCAGAACCTTTTGGGGGTATTAGTTGGTATATAAAGAAGAATGAAGTATCTTTTTGCCAGCCATTTTCCAATGTGAACAATAAAATCTATTAAAAAGTTTGTTTCTGTTTCAATATCATTCCCTGATA------GAAAGAAAAGAAAGAGGGAGTTTAAGGGAGAACCCATTAAAGACTAAAAATAGAAGGGATAAAACTACAATTTCC-------TTAGATAGCAC------TGAGAC-----------AGAAAACTCTGTTTGATCAT-TTGATAAGGTCAAAGATTAAAT-GGTAACT-CAGA-AATTTTTA-ACTATT------TC----CCTCAACAATAATTTCAGAAACAACTCATAGGACTTG-TCTTTTTACT-------TTTGGCCATTTAAATGATGGTGGACAGCAACAGTTCTGTTGGTTTTCACCATTTTGGGGAGTGGACCGGTTTTATGCATACT--GTCT-TCCACTAAAAAAA---TCAGACAAAAAA-G--TTTTTAAAAGCTATTGTTAAGGCAATTAAATTACTTAC i rheMac3.chr5 C 0 I 405 s macFas5.chr5 20723216 858 + 189454096 ACAAGTACAATACTGTGTGCTGTTTTAGGATGTTCAGATTGGTGCCTCCACAAATGAACAAAGAGGCCTTATATTTGTTGATAGCAAGTAGATTG----TACTGCAGAATTGAAG-GGAAAGAAATCGACGCTGCCAAAAGGAAACA----ATACAATTAGAACCACATTTTGACTTGTCTCAAAAACA---TTTTTTGGTATTAAAGTTACTGGGCTATTAAATTGCATGGGGAAAAATAATAGAGCTCATTATAAGGAGTGTCCTGCTTTGCCACAGCTGGAGTCTGGATTGCACACT----TATTAGTTACATGCACTGGAGC-AAGTTGAGGAAATACAGATTAT---AAAGAAAATAACCTTTCCCATTAGGGGAACTTCAATGTCCTCAGAACCTTTTGGGGGTATTAGTTGGTATATAAAGAAGAATGAAGTATCTTTTAGCCAGCCATTTTCCAATGTGAACAATAAAATCTATTAAAAAGTTTGTTTCTGTTTCAATATCATTCCCTGATA------GAAAGAAAAGAAAGAGGGAGTTTAAGGGAGAACCCATTAAAGACTAAAAATAGAAGGGATAAAACTACAATTTCC-------TTAGATAGCAC------TGAGAC-----------AGAAAACTCTGTTTGATCAT-TTGATAAGGTCAAAGATTAAAG-GGTAACT-CAGA-AATTTTTA-ACTATT------TC----CCTCAACAATAATTTCAGAAACAACTCATAGGACTTG-TGTTTTTACT-------TTTGGCCATTTAAATGATGGTGGACAGCAACAGTTCTGTTGGTTTTCACCATTTTGGGGAGTGGACCGGTTTTATGCATACT--GTCT-TCCACTAAAAAAA---TCAGACAAAAAA-G--TTTTTAAAAGCTATTGTTAAGGCAATTAAATTACTTAC i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16317309 858 + 178775436 ACAAGTACAATACTGTGTGCTGTTTTAGGATGTTCAAATTGGTGCCTCCACAAATGAACAAAGAAGCCTTATATTTGTTGATAGCAAGTAGATTG----TACTGCAGAATTGAAG-GGAAAGAAATCGGCGCtgccaaaagaaaaca----atacaattaGAACCACATTTTGACTTGTCTCAAAAACA---TCTTTTGGTATTAAAGTTACTGGGCTATTAAATTGCATGGGGAAAAATAATAGAGCTCATTATAAGGAGTGTCCTGCTTTGCCACAGCTGGAGTCTGGATTGCACACT----TATTAGTTAGATGCACTGGAGC-AAGTTGAGGAAATAcagattat---aaagaaaataaccGTTCCCGTTAGGGGAACTTCAATGTCCTCAGAACCTTTTGGGGGTATTAGTTGGtatataaagaagaatgaagtgTCTTTTTGCCAGCCATTTTCCAATGTGAacaataaaatctatttaaaagtttgtttctGTTTCAATATCATTCCctgata------gaaagaaaagaaagagggagttTAAGGGAGAACCCATTAAAGACTAAAAATAGAAGGGATAAAACTACAATTTCC-------TTAGATAGCAC------TGAGAC-----------AGAAAACTCTGTTTGATCAT-TTGATAAGGTCAAAGATTAAAT-GGTAACT-CAGA-AATTTTTA-ACTATT------TC----CCTCAACAATAATTTCAGAAACAACTCATAGgacttg-tctttttact-------tttggCCATTTAAATGATGGTGGACAGCTACAGTTCTGTTGGTTTTCCTCATTTTGGGGAGTGGACCGGTTTTATGCATATT--GTCT-TCCAgtaaaaaaa---tcagacaaaaaa-g--ttttgaaaagctAATGTTAAGGCAATTAAATTACttac i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19806339 865 - 48547382 ACAAGTACAACACTGTGTGCTGTTTTAGGATGTTCAGATTGGTGCCTCCACAAATGAACAATGAGGCCTTGTATTTGTTGATAGCAAGTAGATTG----TACTGCAGAATTGAAA-GGAAAGAAATCGATGCTGCCAAAAGAAAACA----ATACAATTAGAACCACATTTTGACTTGTCTCAAAAACA---TTTTTTGGTATTAAAGTTACTGGGCTATTAAATTGCATGGGGAAAAATAATAGAGCCCATTACAAGGAGTGTTCTGCTTTGCCACAGCTGGAGTCTGGATTGCACACT----TATTGGTTACATGCACTGGAGC-AAGTTGAGGAAATACAGATTAT---AAAGAAAATCACCTTTCCCATTAGGGGAACTTCAATGTCCTCAGAACCTTTTGGGGGTATTAGTTGGTATATAAAGAAGAATGAAGTATCTTTTTGCCAGCCATTTTCCAATGTGAGCAATAAAATCTATTAAAAAGTTTGTTTCTGTTTCAATATCATTCCCTGTTA------GAAAGAAAAGAAAGAGGGAGTTTAAAGGAGAACCCATTAAAGACTAAAAATAGAAGGGATAAAACTCTAATTTGCTTAGATATTAGATAGCAC------TGAGAC-----------AGAAAACTCTGTTTGATCAT-TTGATAAGGTCAAAGATTAAAT-GATAACT-CAGA-AATTTTTA-ATTATT------TC----CCTCAACAATAATTTCAGAAACAACTCATAGGACTTG-TCTTTTTACT-------TTTGGCCATTTAAATGATGGTGGACAGCTACAGTTCTGTTGGTTTTCCTCATTTTGGGGAGTGAACTGGTTTTATGCATATT--GTCT-TCCACTAAAAAAA---TCAGACAAAAAA-G--TTTTAAAAAGCTAATGTTAAGGCAATTAAATTACTTAC i chlSab2.chr27 I 30 I 460 s calJac3.chr3 21158793 858 - 190850796 ACAAGTACAATACTTTGTGCTGTTTTAGGATGTTAAGATTGGTGCCTCCACAAATGAACAATGAGGCCTTGTATTTGTCGATAGCAAGCAGATTA----TACTACAGAGTTAAAAGGGAAAGGAATCAATGCTGCCAAAAGAAAACA----ATACAATTAGAACCACATTTTGATTTGTCTCAGAAACATTTTTTTTTGGCATTAAAGTTACTGGGCTATTAAATTGCATGGGGAAAAATAACAGAGCTCATTACATGGAGTGTTCTACTTTGCCACAGCTGGAGTCTGGATTGCCCA------GATTAGTTACATGCACTGGAGC-AAGTTGAGGAAATACAGATTAT---TAAGAAAATAACCTTTCCCGTTAGGGGAGCTTCAATGTCCTCAGGACCTTCTGGGGATACTAGCGGCTGTATAAAGAAGAGTGAAATACCTTTTTGTTACCTATTGTCCAATGTGAACAATCAAATCTATAAAAAAGTTTGTTTTGGTTTCAATATCTTTCCCTGGTA------GAAA-AAAAAAGAAAGTGAGTTTAACGGAGAAGCCA-TAAAGACTAAGAATGGAAGGAACAGAACTACAATTTTC-------TTAGATAGCAC------TAAGAC-----------AGA-AAGTCTGTTAGATCAT-TTGGTTAGGACAAAGATGAAAT-GAAAACT-CGGA-ATTTTAAA-ACTATT------CC----CCTCAACAGTGATTTCAGAAACAACTCACAGGACTTG-TCTTTTTACT-------TTTGGCCG-TTAAACGATGGTGGACAGCAACAATTCTATTGGTTTTCCTCGTCTTGAGGAGTGGGCCAGATTAATGCATACT--GTCT-TCTGCTCAAAAAA---TCAAACCAAGAA-GTTTTTTAAAAAGCTAATGTTAGAGCAATTAAATTACTTAC i calJac3.chr3 C 0 C 0 s mm10.chr5 49145520 842 + 151834684 TAAAATATAATTCTGCTCACTGTGGTGGAGTAGTTACATAG----------------------------------TATGGATCAGAA-TACATCA----TATTACAGGATTAATG-GGA---GGATAAATGCTGGGAAAACAAGG-A----ATACAATTAAAATCACATTTTGATTTGTCTTATAAACA---TTTTTT---ATTAAAGTTAGTGGGCCTTTAAATTGAGCAAGGAAAAATAATAGAATTCATTACATGGAGTGTTCTACTTTGCCACAGCTGGAGCCTGCACTGAACACT----TATTAGGTAGAAGCACTGGAGCAAAGTTGAAAAAGTACATATTATTAGTAAGGAAATCACTTTTCCCATTAGGGGATCTTCAATATCCTTGGGAGGTATACGGGTTATCAGTGAG--CATAAAGAATAGTGAGTTGTCTCTGTGCTGTTCTTTATCAATCATGGGCAGTAAGCTCTA-GAAAAAACTAGTTTC-ATTTCAGCATGCTTCCCTGATATGAAGGGGAAAAGGAAAAATGGGGAAATGAATGGATAATTCATTAACATCTAAATATAGAAGGAAGGGATCCACAGTTTCC-------TGAGGTA-TAT------TGAGACCCCCCCCCCAAAAAAAAATCTGTTTAATTTCATTGCTAAGGCCAAAGATTAAATAGGTATTC-CAGACAATTCCTATGCTTCT------TCCATGCCGCAAAAATTATTATAGTCATAGCTCATAGCCTCTGATTTTTGGAAT-------GTTGTTCATTTAGACAATTATCAGAGACATCTGTT-TATAGTATATGTATATTTTGGGAAATGGGTCAATTTGATGAACACTCAACCT-AATACTGAAAAGAAGGTAAGAACTGAAA-A--GTTAAAGAATCAAATGTCAAT---ATTTTATTATTTAC i mm10.chr5 I 1 I 1 s canFam3.chr3 3743019 860 - 91889043 ACAGGTACAAAACTACATGGGGCACTGGAATGTGTAGATTAATGCCT-CACCAATGAAGGACGAGGACTTGTTCTTATTGATATTAAATAGATTATACTTACTACACAATTAAGA-GGGGGGGGATCAATGCTGGAAAAAGAGAACAAGTGATACAATTAGAATGACATTTTGATTTGTCTTAGATTTT--TTTTTTTTGTATTGAAGTTACTGGTCTATTAAATTGCATGGGGGGAAATAATAGAACTCATTACATGGAGTAATC----------CAGCTAGAGCCTGGATTGCACACT-TATTATAAGTTACATGCACTGGAGT-AAGTTGAGGAACTAGAGATTAG---TAAGGAAATAACTTTTCCCATTAGAGGAGCTCCAATATCCTCAGGGCCTTTTAGAAG-ATTGGTGGAAACATAAAAAGGAGCAGAGTATCT----GCCACCCATCACCCACCGTGGACAATAGGCACTA-GGAAATGATGGCTTCTGTGTTAGCATCCTTCCATAATA------GGAAGGACAGAAAGAGGGGATTATGGGGAGAATCTGT--GAGACTGGAAACAGAGGAGATGGAACTACGATCTTC-------TCAGACACCACAAATGATGGGA------------AGGAAAGTCCGT----TCAT-TTCCTGACACCAAACATGAAAA-GAAACTTCCAGG-ATTTGTTT-ACTGTTCTTCTGTC----CTTCAAAAGTAATTTCAGAAAGAACTAATAAAACTTG-TCTTTTTTTTTTTCCAGTTTGATCATTTAAACT--------CGACAATGGTTCCACTGGTCTTCCTTGTTTGGGGGAATGAGCCAGTTTGAGGCACACT--ATGTATCCGTCAGAAAAA---TCAGACCAAAAGCA--TTTTAAAAAGCAAATGTTAAGGCAATTATATTATTTAC i canFam3.chr3 C 0 C 0 a score=926.000000 s hg38.chr4_KI270790v1_alt 40334 1 + 220246 C s panTro4.chr4 21427882 1 + 193495092 C i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21604363 1 + 198332218 C i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20216239 1 - 85365473 C i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16682566 1 + 184069350 C i rheMac3.chr5 I 405 C 0 s macFas5.chr5 20724074 1 + 189454096 t i macFas5.chr5 C 0 I 455 s papAnu2.chr5 16318167 1 + 178775436 t i papAnu2.chr5 C 0 I 455 s calJac3.chr3 21159651 1 - 190850796 T i calJac3.chr3 C 0 C 0 s canFam3.chr3 3743879 1 - 91889043 T i canFam3.chr3 C 0 C 0 e mm10.chr5 49146362 1 + 151834684 I e chlSab2.chr27 19807204 460 - 48547382 I a score=28373.000000 s hg38.chr4_KI270790v1_alt 40335 9 + 220246 ATCTTTACT s panTro4.chr4 21427883 9 + 193495092 ATCATTACT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21604364 9 + 198332218 ATCATTACT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20216240 9 - 85365473 ATCATTACT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16682567 9 + 184069350 ATCATTACT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20724530 9 + 189454096 ATCATTACT i macFas5.chr5 I 455 C 0 s papAnu2.chr5 16318623 9 + 178775436 ATCATTACT i papAnu2.chr5 I 455 C 0 s calJac3.chr3 21159652 9 - 190850796 ATCATTGCT i calJac3.chr3 C 0 C 0 s mm10.chr5 49146363 9 + 151834684 GTCATAATT i mm10.chr5 I 1 C 0 s canFam3.chr3 3743880 9 - 91889043 ATCATCACC i canFam3.chr3 C 0 C 0 e chlSab2.chr27 19807204 460 - 48547382 I a score=1744149.000000 s hg38.chr4_KI270790v1_alt 40344 560 + 220246 AAGGAAAG----AATGATAGATG-CATGGTAATTGAG-GATTTACCTAGTTGCTAGGGATGGCAGTAAGAGTTTCACATA--CATTACATC------------CTTTAATCGTTCATA---------------------------------------AATCACTTA-TTTTTTGGATAAC----------------------------AGAACCTATCCTTGCTTTTTGGAAAATCACATTGCCTTCCACATTGTTCATTTATGAGAAGgaccc-tgtgccctggct---caaaaggtaaacgtatgacccagatctggttaatgaaaacactgtggcaata---aggacagacaa--ttaggatgtgattatagcttggtcagggt-atagaattctgggacttttcctgaaactatCCAATTTTGA---------------GAAAAATCCTCTGGTCATCTACTGTGGATCTACAAGTAGCAAAA----TCTTTCTCTTCCTTTCTGTCT--------------CTCCA-TTTGCCTTCTTCTGCCCTTTTTA-----------GACATTCTAGTAACTAGC----------------TCACTCACCATGAAAACAACTATGAAAGA-----------------GTCATTTTT-GAATACAAAACAAATAAACCAAAGGTTTA----AT-----TT----AAAAAAAAAATTGCTGAACCCTGGGATACATAAGACTGCCAAAATACT s panTro4.chr4 21427892 559 + 193495092 AAGGAAAG----AATGATAGATG-CATGGTAATTGAG-GATTTA-CTAGTTGCTAGGGATGGCAGTAAGAGTTTCACATA--CATTACATC------------CTTTAATCGTTCATA---------------------------------------AATCACTTA-ttttttggataac----------------------------agaacctatccttgctttttggaaaatcacattgccttccacgttgttcatttatgagaaggaccc-tgtgccctggct---caaaaggtaaacgtatgacccagatctggttaatgagaacactgtggcaata---aggacagacaa--ttaggatgtgattatagcttggtcagggt-atagaattctgggacttttcctgaaactatCCAATTTTGA---------------GAAAAATCCTCTGGTCATCTACTGTGGATCTACAAGTAGCAAAA----TCTTTCTCTTCCTTTCTGTCT--------------CTCCA-GTTGCCTTCTTCTGCCCTTTTTA-----------GACATTCTAGTAACTAGC----------------TCACTCACCATGAAAACAACTATGAAAGA-----------------GTCATTTTT-GAATGCAAAACAAATAAACCAAAGGTTTA----AT-----TA----AAAAAAAAAATTGCTGAACCCTGGGATACATAAGACTGCCAAAATACT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21604373 563 + 198332218 AAGGAAAG----AATGATAGATG-CATGGTAATTGAG-GATTTA-CTAGTTGCTAGGGATGGCAGTAAGAGTTTCACATA--CATTACATC------------CCTTAATCATTCATA---------------------------------------AATCACTTAtttttttggataac----------------------------agaacctaaccttgatttttagaaaatcacattgccttccacattgttcatttatgagaaggaccc-tgtgccctggct---caaaaggtaaacatatgacccagatctggttaataaaaacactgtggcaata---aggacagacaa--ttaggatgtgattatagcttggtcagggt-atagaattctggaacttttcctgaaaatatCCAATTTTGA---------------GAAAAATTGTCTGGTCATCTACTGTGGATCTACAAGCAGCAAAA----TCTTTCTCTTCCTTTCTCTCT--------------CTCCA-TTTGCCTTCTTCTGCCCTTTTTA-----------GACATTCTAGTAACTGGC----------------TCGCTCACCATGAAAACAGCTATAAAAGA-----------------GTCTTTTTT-GAATGCAAAACAAATAAACCAAAGGtttaatatat-----tt----ttttaaaaaattGCTGAA-CCTGGGATACATAAGACTGCCAAAATACT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20216249 559 - 85365473 AAGGAAAG----AATGATAGATG-CATGGTAATTCAG-GATTTA-CTAGTTGCTAGGGATGGTAGTAAGTGTTTCACATA--CATTACATC------------CTTTAATCGTTCATA---------------------------------------AATCACTTA-TTTTTTGGATAAC----------------------------AGAACCTATCCTTGCTTTTTGGAAAATCACATTGCCTTCCACATTGTTCATTTATGAGAAGGACTC-TGTGCCCTGGCT---CAAAAGGTAAACATATGACCCAGATCTGGTTAATGAAAACACTGTGGCAATA---AGGACAGACAA--TTAGGATGGGATTATAGCTTGGTCAGGGT-ATAGAATTCTGGGACTTTTCCTGAAACGATCCAATTTTGA---------------GAAAAATCCTCTGGTCATCTACTATGGATCTACAAGTAGCAAAA----TCTTTCTCTTCCTTTCTCTCT--------------CTCCATTTTGCCTTCTTCTGCCCTTTTTA-----------GACATTCTAGTAACTAGC----------------TCACTCACCATGAAAACAACTAT--AAGA-----------------GTCATTTTT-GAATGCAAAACAAATAAACCAAAGGTTTA----ATA----TT----TTTTAAAAAATTGCTGAACCCTGGGATTCATAAGACTGCCAAAATACT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16682576 560 + 184069350 AAGGAAAG----AATGATAGGTG-CATGGTAATTGAG-GATTTA-CTAGTTGCTAGGGATGGCAGTAAGTGTTTCACATA--CATTACATC------------CTTTAATCTTTCATA---------------------------------------AGTCACTTA-ttttttggataac----------------------------agaacctatgcttgctttttggaaaatcacattgccttctacattgtttatttatgagaaggaccc-tgtgccctggct---caaaaggtaaacatatgacccagatctggttaatgaaaacactGCGGCAATA---AGGACAGACAA--TTAGGATGTGATTATAGCTTGGTCAGGGT-ATAGAATTATGCGACTTTTCCTGAAAGTATCCAATTTTGA---------------GAAAAATCCTCTGGTCATCTACTGTGGATCTACAAGTAGCAAAA----TCTTTCTCTTCCTTTCTCTCT--------------CTCCA-TTTGCCTTCTTCTTCCCTTTTTA-----------GACATTCTAGTAACTAGC----------------TCATTCACCATGAAAATAACTAT-AAAGA-----------------GTCATTTTT-G-ATGCAAAACAAATGAACCAAAGGTTTA----ATA--TTTT----CTTTAAAAAAATGCTGAACCCTGGGACACATAAGACTGCCAAAATACT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20724539 560 + 189454096 AAGGAAAG----AATGATAGGTG-CATGGTAattgag-gattta-ctagttgctagggatggcagtaagtgtttcacata--cattacatc------------ctttaatctttcata---------------------------------------aGTCACTTA-TTTTTTGGATAAC----------------------------AGAACCTATGCTTGCTTTTTGGAAAATCACATTGCCTTCTACATTGTTTATTTATGAGAAGGACCC-TGTGCCCTGGCT---CAAAAGGTAAACATATGACCCAGATCTGGTTAATGAAAACACTGCGGCAATA---AGGACAGACAA--TTAGGATGTGATTATAGCTTGGTCAGGGT-ATAGAATTATGCGACTTTTCCTGAAATTATCCAATTTTGA---------------GAAAAATCCTCTGGTCATCTACCGTGGATCTACAAGTAGCAAAA----tctttctcttcctttctctct--------------ctcca-tttgccttcttcttccCTGTTTA-----------GACATTCTAGTAACTAGC----------------TCATTCACCATGAAAATAACTAT-AAAGA-----------------GTCATTTTT-G-ATGCAAAACAAATGAACCAAAGGTTTA----ATA--TTTT----CTTTAAAAAAATGCTGAACCCTGGGACACAAAAGACTGCCAAAATACT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16318632 559 + 178775436 AAGGAAAG----AATGATAGGTG-CATGGTAATTGAG-GA-TTA-CTAGTTGCTAGGGATGGCAGTAAGTGTTTCACATA--CATTACATC------------CTTTAATCTTTCATA---------------------------------------AGTCACTTA-TTTTTTGGATAAC----------------------------AGAACCTATGCTTGCTTTTTGGAAAATCGCATTGCCTTCTACATTGTTTATTTATGAGAAGGACCC-TGTGCCCTGGCT---CAAAAGGTAAACATATGACCCAGATCTGGTTAATGAAAACACTGCGGCAATA---AGGACGGACAA--TTAGGATGTGATTATAGCTTGGTCAGGGT-ATAGAATTATGCGACTTTTCCTGAAAGTATCCAATTTTGA---------------GAAAAATCCTCTGGTCATCTACTGTGGATCTACAAGTAGCaaaa----tctttctcttcctttctctct--------------ctcca-tttcccttcttcttcccttttta-----------gACATTCTAGTAACTAGC----------------TCGTTCACCATGAAAACAACTAT-AAAGA-----------------GTCATTTTT-G-ATGCAAAACAAATGAACcaaaggttta----att--tttt----ttttttttaaatgctgaaccCTGGGACACATAAGACTGCcaaaatact i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19807664 561 - 48547382 AAGGAAAG----AATGATAGGTG-CATGGTAattgag-gattta-ctagttgctagggatggcagtaagtgtttcacata--tattacatc------------ctttaatcttcCATA---------------------------------------AGTCACTTA-TTTTTCGGATAAC----------------------------AGAACCTATCCTTGCTTTTTGGAAAATCGCATTGCCTTCTACATTGTTCATTTATGAGAAGGACCC-TGTGCCCTGGCT---CAAAAGGTAAACATATGACCCAGATCTGGTTAATGAAAACACTGCGGCAATA---AGGACGGACAA--TTAGGATATGATTATAGCTTGGTCAGGGT-ATACAATTCTGCAACTTTTCCTGAAAGTATCCAATTTTGA---------------GAAAAATTCTTTGGTCATCTACTGTGGATCTACAAGTAGCAAAA----TCTTTCTCTTCCTTTCTCTCT--------------CTCCA-TTCGCCGCCTTCTTCTCTTTTTA-----------GACATTCTAGTAACTAGC----------------TCATTCACCATGAAAACAACTAT-AAAGA-----------------GTCATTTTT-GAATGCAAAACAAATGAACCAAAGGTTTA----ATA--TTTT----TTTTAAAAAATTGCTGAACCCTGGGATACATAAGACTGCCAAAATACT i chlSab2.chr27 I 460 C 0 s calJac3.chr3 21159661 559 - 190850796 AAGGAAAG----AATGATAGGTG-CATGGTAATTGAG-GATTTA--TAGTGGCTAGGAATGGCAGCAAGTGTTTCACATA--CATTACATC------------CTTCAATCTTTCATA---------------------------------------AAtcaccta-ttttttggataac----------------------------agaacctattcttgctttgtggaaaatcacattgccttccacattgttcatttataataaggaccc-tgtgctctggct---caaaaggtaaacatatgacccagatctagttaatgaaaacgctgtggcaata---aggatggataa--ttaggatgtgattccagcttgaccaggat-gtagaattcagggacatttcctgaaactatGTCATTTTGA---------------GAAAACTACTCTGGTCATCTACTGTGGATCTATGATTAGCAAAA----TCTTTCTTTTCCATTCTCTCT--------------CTCCG-TATGCCTCCTTCTGCCCTTTTTA-----------GACATTCTAGTAACTAGC----------------TCATTAGCCAAGAAAA-AACTATAAAAGA-----------------GTCATTTTT-GAATGCAAAACAAATAAACCACAGGttta----atatatttt----ttttaaaaa---GCTGAATTCTGGGATACATAAAACTGCCAAAATACT i calJac3.chr3 C 0 C 0 s mm10.chr5 49146372 609 + 151834684 AAAGATAA----AA-GCTAGCCATCAT--TAGTTGAG-TCCGTG-CTATTTCCTAGAAATGATGTGACATTGCTCATATATTTGTCACATCTTCAACATTTAATTTTGGCTTTCTTTA---------------------------------------GGTCATTTG------AGGAGAAG----------------------------AG---------TTGCTGATGGGAATGCTGCAATGCCTTC-ATATCATTTACTTATGAGAAAAAAAT-TCTGC---------------GATAATTACA-ACTCTGGGACTGTTTAATTAAATTTCTATTACAA----------AGACTAGGTCTGGGTAGGACTA-AGCCTGACAGTTGTCACAGAACACTGAATTTCTTCCTGTAATT-----ATTTTGAAAACAAATAAACAATGAACAAACATCTGGTCTTCAATTCTAAGACTATCAAAAGCAAAACATCCCCCTCTCTTCCTTTCTCCATGAATGTCCTTACTGCTTTA-TTTTCATTCTAGCCACCTTTTTatcatcaccatcaccatcatcatcaccatcaccatcatcatcatcatcatcaacaacaacaacaacaac-aacaacagcaacaataacCACCACCATTTTT---ATGCAAAAGAAAGAAAATGAAGGTTTG----CTA--TCTTAACATTTCTACAAGTTAATAACTTCTGGGACACACAAGAATGCA-----GTC i mm10.chr5 C 0 C 0 s canFam3.chr3 3743889 615 - 91889043 -AGGAAAATTATTataataggggtcat--taattgagcaatcta-ctatccattaagagtggta-tgagtattacacatg--cactacatc------------atttaatcctTTGTGTCAGCCTGCCTCGAATtttatttatttatttacttacttatttattta-tttatttacttacttacttacttatttacttactttgatttaGAACCCATCCTGACTTTTGGGAATACCACACTG----------------TTTATGAAGAAGAcccatccctcttggctgggcagggggagaacatatgacccatggatgtttaatgagaactctgtgacaatgattagtttaga-aa--tgagtgtgtggtgacagcctggccagtgtgatagaatcctgggacttctc---aaattattgAACGGCAT---------------GAACAATCCTCTGGTCATA---TGTGGGTCTATGACCAGTAAG-----TCTTTCCCTTCCTTTCTCTCT--------------CCC---TTTATCCCTTTTTGTCCCTCTTG-----------GTCATACCAGCAGCTGGG----------------TTATTCACTATGACAACAACTACAGGTGT-----------------GTCATTTTTTGTAGACAAATGAAATACATCAAAGCTTTA----ATCTACTTA----TTTTGAAAAGGTGCTGA-CTCTGGGATACCTAAGCCTGAAGAAGTACT i canFam3.chr3 C 0 I 191 a score=863719.000000 s hg38.chr4_KI270790v1_alt 40904 218 + 220246 TATT-AAAACATATAAGCAATTCTAAAGGAGTCAGAATGAATGCTTAGAGT-TTAAGTGACTATCATCAACATTTAATTTACCGAGGTGGATGTGCCATTGACCACTGATATTAAAGAGCCATTACCAAGAATGCACATATGAGCACATTACATCTAAATGG---------TCCCTTCACCTCTTTCTGGATAGCTTGTGGGAA---------TCACTTTTAA---------CTA------TGCTAATTGTTT s panTro4.chr4 21428451 218 + 193495092 TATT-AAAACATATAAGCAATTCTAAAGGAGTCAGAATGAATGCTTAGAGT-TTAAGTGACTATCATCAACATTTAATTTACCGAGGTGGATGTGCCATTGACCGCTGATATTAAAGAGCCATTACCAAGAATGCACATATGAGCACATTACATCTAAATGG---------TCCCTTCACCTCTTTTTGGATAGCTTGTGGGAA---------TCACTTTTAA---------CTA------TGCTAATTGTTT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21604936 218 + 198332218 TATT-AAAACATACAAGCAATTCTAAAGGAGTCAGAATGAATGCTTAGAGT-TTAAGTGACTATCATTAACATTTAATTTACCCAGGTGGATGTGCCATTCACCACTGATATTAAAGAGCCATTACCAAGAATGCACATACGAGCACATTACATCTAAATGG---------TCCCTTCACCTCTTTTTGGATAGCTTGTGGGAA---------TCACTTTTAA---------CTA------TGCTAATTGTTT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20216808 218 - 85365473 TATT-AAAACATATAAGCAATTCTAAAGGAGTCAGAATGAATGCTTAGAGT-TTAAGTGACTATCACTAACATTTAATTTACCAAGGTGGATGTGCCATTCACCACTGATATTAAAGAACCATTACCAAGAATGCACATATCAGCACATTATATCTAAATGG---------TCCCTTCTCCTCTTTTTGGATAGCTTGTGGGAA---------TCACTTCTAA---------CTA------TGCTAATTGTTT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16683136 218 + 184069350 TATT-AAAACATATAAGCAATTCTAAAGGAGTCAGAATGAATGTTTAGAGT-TTAAGTGACTATTATTAACATTTAATTTACCGAGGTGGATGTGCCATTCACCACTGATATTAAAGAGCCATTACCAAGAATGCACATATGAGCACATTATATCTAAATGG---------CCCCTTCACCTCTTTTTGGATAGCTTGTGGGAA---------TCACTTTTAA---------CTA------TGCTAATTGTTT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20725099 218 + 189454096 TATT-AAAACATATAAGCAATTCTAAAGGAGTCAGAATGAATGTTTAGAGT-TTAAGTGACTATTATTAACATTTAATTTACCGAGGTGGATGTGCCATTCACCACTGATATTAAAGAGCCATTACCAAGAATGCACATATGAGCACATTATATCTAAATGG---------CCCCTTCACCTCTTTTTGGATAGCTTGTGGGAA---------TCACTTTTAA---------CTA------TGCTAATTGTTT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16319191 218 + 178775436 tatt-aaaacaTATAAGCAATTCTAAAGGAGTCAGAATGAATGTTTAGAGT-TTAAGTGACTatcattaacatttaatttacCGAGGTGGATGTGCCATTCACCACTGACATTAAAGAGCCATTACCAAGAATGCACATATGAGCACATTATATCTAAATGG---------CCCCTTCACCTCTTTTTGGATAGCTTGTGGGAA---------TCACTTTTAA---------CTA------TGCTAATTGTTT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19808225 218 - 48547382 TATT-AAAACATATAAGCAATTCTAAAGGAGTCAGAATGAATGCTTAGAGT-GTAAGTGACTATCATTAACATTTAATTTACCGAGGTGGATGTGCCATTCACCACTGATATTAAAGAGCTATTACCAAGAATGCACATATAAGCACATTACATCTAAATGG---------CCCCTTCACCTCTTTTTGGATAGCTTGTGGGAA---------TCACTTTTAA---------CTA------TGCTAATTGTTT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21160220 215 - 190850796 TATTAAAAACATATAAGCAATTCTAAAGGAGTCAGAATGAA---TTAGAAT-TTAAGTGACTATCATTAACATTTAATTTACCAAGGTGGATGTGCCATTCACCACTGATATTAAAGAGCCATTACCAAGAATGTTTATATGAGCACATTACTTCTAAATGG---------CCCCTTCA-CTTTTTATGGATAGCTTGTGGGAA---------TCACTTTTAA---------CTA------TGCTAATTGTTT i calJac3.chr3 C 0 C 0 s mm10.chr5 49146981 241 + 151834684 TGTT-GAAGTTCATAAGCAATTCTAAACTACTTAGAATGAATGATTGCTTTGTTAAGTAGTTATCATTAACATTTAATTTATAGAAGTTGATAGGGTACTCAAC-CTGATATTAAAGACCCATT---AGGAATTCACACATGTGC-CCTAAAGCCTAAACAGATTCTCAACACCCCTCCTTTTTTACTGAAGGGTGTATATGGACTGTTTCTttcttttttaaattaattggtta------ttttatttattt i mm10.chr5 C 0 I 251 s canFam3.chr3 3744695 224 - 91889043 TATT-AAAGCATATAAGCAATTATAGAATAGTCAGAAAGAATGATTAGAGT-TTAAGTGGCTATTATTAACATTTAATTTACAGAGGTGGATAAGCCATTCACCACTGATATTAAAGAGCCATTACTAAGAATAAACATATGTGCACATTATATCTAAATGG---------CTCCTCTATCTCGCTTTGGAGAGCTTCTAGAAA---------CCACTTCTAC---------CTAAGAGAGTGTTAATTGTTT i canFam3.chr3 I 191 C 0 a score=5497916.000000 s hg38.chr4_KI270790v1_alt 41122 1594 + 220246 ATGCCGAGTAA-------------------ACATTCATGCTTAAATGCCTCCAACAAAATAACATGTAACATTTGGGAATTTCGTGGTAACTTGATGACTTTTATTAT-----------CAGAACCAAATAAAGAACA---CATGTTTATTGCATATTAAATAGAAATGAGGAAAA-TTTCTTAA----CCAAAACAAAAAC----------TTTTTTTAAA-A-------ACTGTAGTAAACTGCATATTTTCTAGAAGGCC----AACAACAAAAGCAAACCTCTCTTTAATAAGTATTTTATGTTATAAAATTGGAAA--------------------------------------------ATTTGTCCACACGCAGGGATTTAAAATTGAGTTATCAAATTCCAGATTTTAAACTAAATATGAAAAAGTGTTGTGACCTAAAAATTATTTCAAGCTTAAGATACCAAAGTGAACAAAAATACTTTCACATTTATATTCCACCTCTCAACACTCGCGTAAATACACAGAACCCAAAATATCTTTTGCAATTATCTTAATTACTGTTACCTTTGATTTATCTTACAAGGGTAATGCATTTAAAATTGTAATTTCTCATTAATGTCAGTTAGGTTTTAAAGGATTTT-AAAAACATTACTTCTCTGTTGGTTGGTCTGATGTTTTAAATATG-TTTGATTCAAATAAT-------ACAGATGTT---ATAAC-----TA------------AAGGATCAGTTTCCATAGGGCCA-------------------------------------------------------------TAATTTTGCAATGCTAATAACTACTAGATTTTTTT---TAAAGATAGGTAT---TTCCCACAAGCACATT--TGTATATATTGGCAGAAGGAATGGATATGTTAAAAAATGATTCAAA-CACAAATGGTTTCCTTCAACTTAATGTTTTAAACTTTCTGTGTGTTTGAAGCATTTCTCC-------AAAAACATGATGAtggaacatgcattggaagaagaatcagaaaagtcaaattttt-acataaagtctgttaactcctttgctgtgtgaatattgacacattgcttaacattgcttaatctttctgtgtgttactatattcaaattgggaattgcattacttgcattacatatctttccacaatttatatgaaaatcaaatgggataacagatatgataggcaacgaaaattccaaaatgctaaattaatga---atgggt-GCTCTGTTCATCACTTACCAATCTAATATTTAATGAGCTACTACTCAATATAT--AGATA-----ATTTAGAAAAAGTACTCAAATATGACAGTAGGAGAGACACATAAAATATGTTAAGTCCTATAAGAAAGGTTTAGTTCAAATGCTAAGAGAATTCAGA-GACAGGGAAAGATAATTTTGACTGAGAGAGAGGACTAGG-AGGGAAAGTAGAAGTGACGCTATTTGAACTGGGTCTTGGGAAACACTAGGACCTGGATCTCAGATGA-GAAAACATGTTTTAAGTAGGGGAGGAGATAATGGATTTGAAGGTTTAGGGTTATCTATTGCCTGTTTTGAGTGCATGATATAATGCATTTCACTTCTTCAGTTAACTAAAAGAATCACGTAAATTGTTT-----------------AAAAGGAGTAGAAGATCTTGAATAATCATATACCTTTTTACTAAGCAATTAATATATCTAAGACAT---TGTTTTTATCTACTATCTCAGTGTTGTGATATGAGTATTATTGCTATTA-----TATCCATTGATAGATTAGAA s panTro4.chr4 21428669 1594 + 193495092 ATTCCCAGTAA-------------------ACATTCATGCTCAAATGCCTCCAACAAAATAACATCTAATATTTGGGAATTTTGTGGTAACTTGATGACTTTTATTAT-----------CAGAACCAAATAAAGAACA---CATGTTTATTGCATATTAAATAGAAATGAGAAAAA-TTTCTTAA----CCAAAACAAAAAC----------TTTTTAAAAA-A-------ACTGTAGTAAACTGCATATTTTCTAGAAGGCC----AACAACAAAAGCAAACCTCCCTTTAATAAGTATTTTATGTTATAAAATTGGAAA--------------------------------------------ATTTGTCCACACGCAGGGATTTAAAATTGAGTTATCAAATTCCAGATTTTAAACTAAATATGAAAAAGTGTTGTGACCTAAAAATTATTTCAAGCTTAAGATACCAAAGTGAACAAAAATACTTTCACATTTATATTCCACCTCTCAACACTCGCGCAAATACACAGAACCCAAAATATCTTTTGCAATTATCTTAATTACTGTTACCTTTGATTTATCTTACAAGGGTAATGCATTTAAAATTGTAATTTCTTATTAATGTCAGTTAGGTTTTAAAGGATTTT-AAAAACATTACTTCTCTGTTGGTTGGTCTGATGTTTTAAATATG-TTTGATTCAAATAAT-------AGAGATGTT---ATAAC-----TA------------AAGGATCAGTTTCCATAGGGCCA-------------------------------------------------------------TAATTTTGCAATGCTAATAACTACTAGATTTTTTT---TAAAGATAGGTAT---TTCCCACAAGCACATT--TGTATATATTGGCAGAAGGAATGGATATGTTAAAAAATGATTCAAA-CACAAATGGTTTCCTTCAACTTAATGTTTTAAACTTTCTGTGTGTTTGAAGCATTTCTCC-------AAAAACATGATGAtggaacatgcattggaagaagaatcagaaaagtcaaattttt-atataaagtctgttaacttctttgctgtgtgaatattgacacattgcttaacattgcttaatctttctgtgtgttactatattcaaattgggaattgcattacttgcattatgtatctttccacaatttatatgaaaaccaaatgggataacagatacgataggcaatgaaaattccaaaatgctaaattaatga---atgggt-GCTCTGTTCATCACTTACCAATCTAATATTTAATGAGTTACTACTCAATATAT--AGATA-----ATTTAGAAAAAGTACTCAAATATGACAGCAGGAGAGATACATAAAATATGTTAAGTCCTATAAGAAAGATTTAGTTCAAATGCTAATAGAATTCAGA-GACAGGGAAAGATAATTTTGACTGAGAGAGAGGACTAGG-AGGGAAAGTAGAAGTGATGCTATTTGAACTGGGTCTTGGGAAACACTAGGACCTGGATCTCAGATGA-GAAAACATGTTTTAAGTAGGGGAGGAGGTCATGGATTTGAAGGTTTAGGGTTATCTATTGCCTGTTTTGAGTCCATGATATAATGCATTTCACTTCTTCAGTTAACTAAAAGAATCACGTAAATTGTTT-----------------AAAAGGAGTAGAAGATCTTGAATAATCATATACCTTTTTACTAAGCAATTAATATATCTAAGACAT---TGTTTTTATCTACTATCTCAGTGTTGTGATATGAGTATTATTGCTATTA-----TATCCATTGATAGATTAGAA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21605154 1608 + 198332218 ATTCCCAGTAA-------------------ACATTCATGCTTAAATGCCTCCAACAAAATAACATGTAATATTTGGGAATTTTGTGGTAACTTGATGACTTTTATTATCAGAACCATACCAGAACCAAATAAAGA--A---CATGTTT-TTGCGTGTTAAATAGAAATGAGAAAAGTTTTCTTAA----CCAAAACAAAAAC----------ATTTTTTAAA-A-------AATGTAGTAAACTGCATATTTTCT---AGGTC----AACAACAAAAGCAAACCTCTCTTTAATAAGTATTTTATGTTGTAAAATTGGAAA--------------------------------------------ATTTGTCCACATACAGGGATTTAAAATTGAATTATCAAATTTCAGATTTTAAACTAAATATGAAAAAGTGTTGTGATCTAAAAATTATTTCAAGCTTAAGATACCAAAGTGAACAAAAATACTTTCACATTTATATTCCACCTCTCAACACTCACGCAAATACACAGAACCCAAAATATCTTTTGCAATTATCTTAATTACTGTTACCTTTGATTTATCTTACAAGGGTAATGCATTTAAAATTATAATTTCTCATTAATGCCAGTTAGGTTTTACAGGATTTT-AAAAACATTACTTCTTTGTTGGTTGGTCTGATGTTTTAAATATG-TTTGATTCAAAGAAT-------AGAGATGTT---ATAAC-----TA------------AAGGATCAGTTTCCATAGGGCCA-------------------------------------------------------------TAATTTTGCAATGCTAATAACTACTAGATTTTTTT---TAAAGATAGGTAT---TTCCCACAAGCATATT--TGTATATATTGGCAGAAGGAATGGATATGTTAAAAAGTGATTCAAA-CACAAATGGTTTCCTTCAACTTAATGTTTTAAACTTTCTGTGTGTTTGAAGCATTTCTCC-------AAAAACATGATGAtggaagatgcattggaagaagaatctgaaaagtcaaattttt-atataatgtctg-taactcctctgctgtgtgaatattgacacattgcttaacattgcttaatctttctgtgtattactatattcaaattgggaattgcattacttgtattacatatctttccacaatttatatgaaaaccaaatgggataatagatatgataggcaatgaaaattccaaaatgctaaattaatga---atgggt-GCTCTGTTTATCACTTACCAATCTAATATTTAATGAGCTACTACTCAATATAT--AGATA-----ATTTAGAAAAAGTACTCAAATATGACAGTAGGAGGGATACATAAAATATGTTAAGTCCTATAAGAAAGGTTTAGCTCAAATGCTAAGAGAATTCAGA-GACAGGGAAAGATAATTTTGACTGAGAGAGAGGACTAGG-AGGGAAAGCAGAAGTGACGCTATTTGAACTGGGTCTTGGGAAATACTAGTACCTGGACCTCAGATGA-GAAAACATGTTTTAAGTAGGGGAGGAGGTCATGGATTTGAAGGTTTAGGGTTATCTATTGCCTGTTTTGAGTCCATGATATAATGCATTTCACTTCTTCAGTTAACTAAAAGAATCACCTAAATTGTTTAAA--------AGGAGAAAAAGGAGTAGAAGACCTAGAATAATCATATAACTTTTTACTAAGCAATTAATATATCTAAGACAT---TGTTTTTATGTATTATCTCAGTGTTGTGATATGAGTATTATTGCTATTA-----TATCCATTGATAGATTAGAA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20217026 1608 - 85365473 ATTCCCAGTAA-------------------ACATTCATGCTTAAATGCCTCCAACAAAATAACATGTAATATTTGGGAATTTCGTGGTAAATTGATGACTTTTATTATCAGAACCATACCAGAACCAAATAAAGAACA---CATGTTTATTGCATATTAAATAGAAATGAGAAAACTTTTCTTAA----CCAAAACAAAAAC----------TTTTTTTGAA-A-------AATGTAGTAAACTGCATATTTTCTAGAAGTCC----AACAAGAAAAGGAAACCTCTCTTTAAAAAGTATTTTATGTTGTAAAATTGGAAA--------------------------------------------ATTTGTCCACAT--AGAGatttaaaattgaattatcaaatttcagattttaaaCTAAGTATGAAAAAGTGTTGTGATCTAAAAATTATTTCAAGCTTAAGATACCAAAGTGAATAAAAATACTTTCACATTTATATTCCACCTCTCAACACTCTCACAAATACACAGAACCCAAAATATCTTTTGCAATTATCTTAATTACTGTTACCTTTGATTTATCTTACAAGGGTAATGCATTTAAAATTGTAATTTCTCATTAATGTCAGTTAGGTTTTACAGGATTTT-AAAAACATTACTTCTTTGTTGGTTGGTCTGATGTTTTAAATATG-TTTGATTCAAAGAAT-------AGAGATGTT---ATAAC-----TA------------AAGGATCAGTTTCCATAGGGCCA-------------------------------------------------------------TAATTTTGCAATGCTAATAACTACCAGATTTTTTC---TAAAGATAGATAT---TTCCCACAAGCACATT--TGTATATATTGGCAGAAGGAATAGATATGTTAAAAAATGATTCAAA-CACAAATGGTTTCCTTCAACTTAATGTTTTAAACTTTCTGTGTGTTTGAAGCATTTCTCC-------AAAAACATGATGAtggaacatgcattggaagaagaatcagaaaagtcaaattttt-atataaggtctg-taactcctttgctgtgtgaatattgacacattgcttaatattgcttaatctttctgtgagttattatattcaaattgggaattgcattacttgcattacatatctttccatgatttatatgaaaaccaaatgggataatagatatgataggcaatgaaaattccaaaatgctaaattaataa---atgggt-GCTCTGTTCATCACTTACCAGTCTACTATTTAATGAGCTACTACTCAATAT------ATA-----ATTTAGAAAAAGTACTCAAATATGACAGTAGGAGAGATACATAAAATATGGTAAGTACTATAAGAAAGGTTTAGTTCAAATGCTAAGAGAATTCAGA-TAGAGGGAAAGATAATTTTGACTGAGAGAGAGGACTAGG-AGGGAAAGTAGAAGTGACGCTATTTGAACTGGGTCTTGGGAAATACTAGGACCTGGATCTCAGATGA-GAAAGCATGTTTTAAGCAGGGGAGGAGGTCATGGATTTGAAGGTTTAGGGTTATATATTGCCTGTTTTGAGTCCATGATATAATGCATTTCGCTTCTTTAGTTAACTAAAAGAATCACCTAAATTGTTTAAA--------AGGAGAAAAAGGAATAGAAGATCTAGAATAATCATATACCTTTTTACTAAGCAATTAATATATCTAAGACAT---TGTTTTTATCTATTATCTCAGTGTTGTGATATGAGCATTATTGCTATTA-----AATCCATTGATAGATTAGAA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16683354 1601 + 184069350 TTTCCCAGTAA-------------------ACATTCATGCTTAAATGCCTCCAACAAAATAACATGTAATATTTGGGAATTTCGTGATAACTTGATGACTTTTATTATCAGAACCATATCAGAACCAAATAAAGAACA---CATGTTTATTGCATATTAAATAGAAATGATAAAACTTTTCTTAA----CCAAAACAAAAAC----------TTTTTTTTAA-A---------TGCAGTAAACTGCATATTTTCTAGAAGGCC----AACAACAAAAACAAACCTCTCTTTAGTAAGTATTTTATGGTGCAAAATTGGAGA--------------------------------------------ATTTGTCCACATACAGGGATTTAAAATGGAATTATCAAATTTCAGATTTTAAACTAAGTATGAAAAAGTGTTGTGATCTAAAAATTATTTCAGGCTTAAGATACCAAAGTGAACAAAAACACCTTCACATTTATATTCCACCTCTCAACACTCGCACAAATACACAGAACCCAAAATATCTTTTGCAATTATCTTAATTACTGCTACCTTTGATTTATCTTACAAGGGTAATGCATTTAAAATTGTAATTTCTCATTAATGTCAGTTAGGTTTTACAGGATTTT-AAAAACATTACTTCTTTGTTGGTTGGTCTGATGTTTTAAATATG-TTTGATTCAAATAAT---------AGATGT---------------------------------------------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--------------------------------TTT---TAAAGATAGGTAT---TTCCCACAAGCATATT--TGTATATATTGGCAGAAGGAATGGATATGTTAAAAAATGATTCAAA-CACAAATGGTTTCCTTCAACTTAATGTATTAAACTT--TGTGTGTTTGAAGCATTTCTCT-------GAAAACATGATGAtggaacacgcactggaagaagaatctgaaaagtcaaattttt-atataatgtctg-taattcctttgctgtgtgaatattgacacattgcttaacattgcttaatctttctgtatgttactatattcaaattgggaattgcattacttgctttacatatccttccgcaatttatatgaaaaccaaatgggataacagatatgataggcaatgaaaattccaaaatgctaaattaataa---atgagt-GCTCTGTTTATCACTTACCAATCTAATATTTAATAAGCTACTACTCCATATGC--AGATA-----ATTTAGAAAAAGTACTCAAATGTGACAGTAGGAGAGATACATAAAATACGTTAAGTCCTATAAGAAAGGTTTAGTGCAAATGCTAAGAGAATTCAG---ACAGGGAAAGATAATTTTGACTGAGAGAGAGGACTAGG-AGGGAAAGTAGAAGTGATGCTATTTGAACTGGGTCTTGGGAAATACTAAGACCTGGATCTCAGATGA-GAAAACATGTATTAAGTAGGGGAGGAGGTCATGGATTTGAAGGTTAAGGGTTATCTATTGCCTGTTTTGAGTCCATGATATAATCCATTTCA---CTTTAGTTAACTAAAAGGATTACCTAAATTGTTTAAA--------AGGAGAAAAAGGAGTAGTAGATCTAGAATAATCATATACCTTTCTACCAAGCAATTAATATATCTAAGACAT---TGTTTTTATTTATTATATCAGTATTATGATATGAGCATTATTGCTATTA-----TATCCACTGATAAATTAGAA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20725317 1595 + 189454096 TTTCCCAGTAA-------------------ACATTCATGCTTAAATGCCTCCAACAAAATAACATGTAATATTTGGGAATTTCGTGATAACTTGATGACTTTTATTATCAGAACCATATCAGAACCAAATAAAGAACA---CATGTTTATTGCATATTAAATAGAAACGATAAAACTTTTCTTAA----CCAAAACAAAAAC----------TTTTTTTTAA-A---------TGCAGTAAACTGCATATTTTCTAGAAGGCC----AACAACAAAAACAAACCTCTCTTTAGTAAGTATTTTATGGTGCAAAATTGGAGA--------------------------------------------ATTTGTCCACATACAGGGATTTAAAATGGAATTATCAAATTTCAGATTTTAAACTAAGTATGAAAAAGTGTTGTGATCTAAAAATTATTTCAGGCTTAAGATACCAAAGTGAACAAAAACACCTTCACATTTATATTCCACCTCTCAACACTCGCACAAATACACAGAACCCAAAATATCTTTTGCAATTATCTTAATTACTGCTACCTTTGATTTATCTTACAAGGGTAATGCATTTAAAATTGTAATTTCTCATTAATGTCAGTTAGG-TTTACAGGATTTT-AAAAACATTACTTCTTTGTTGGTTGGTCTGATGTTTTAAATATG-TTTGATTCAAATAAT---------AGATGTTATAATAAC-----TA------------AAGGATCAGTT----------CA-------------------------------------------------------------TAATTTTGCAATGCTAATAACTACTAGATTTTTTT---TAAAGATAGGTAT---TTCCCACAAGCATATT--TGTATATATTGGCAGAAGGAATGGATATGTTAAAAAATGATTCAAA-CACAAATGGTTTCCTTCAACTTAATGTATTAAACTT--TGTGTGTTTGAAGCATTTCTCT-------GAAAACATGATGAtggaacacgcactggaagaagaatctgaaaagtcaaattttt-atataaggtctg-taattcctttgctgtgtgaatattgacacattgcttaacattgcttaatctttctgtatgttactatattcaaattgggaattgcattacttgctttacatatccttccgcaatttatatgaaaaccaaatgggataacagatatgataggcaatgaaaattccaaaatgctaaattaataa---atgagt-GCTCTGTTTATCACTTACCAATCTAATATTTAATAAGCTACTACTCCATATGC--AGATA-----ATTTAGAAAAAGTACTCAAATGTGACAGTAGGAGAGATACATAAAATACGTTAAGTCCTATAAGAAAGGTTTAGTGCAAATGCTAAGAGAATTCAG---ACAGGGAAAGATAATTTTGACTGAGAGAGAGGACTAGG-AGGGAAAGTAGAAGTGATGCTATTTGAACTGGGTCTTGGGAAATACTAAGACCTGGATCTCAGATGA-GAAAACATGTATTAAGTAGGGGAGGAGGTCATGGATTTGAAGGTTAAGGGTTATCTATTGCCTGTTTTGAGTCCATGATATAATCCATTTCA---CTTTAGTTAACTAAAAGGATTACCTAAATTGTTTAAA--------AGGAGAAAAAGGAGTAGTAGATCTAGAATAATCATATACCTTTCTACCAAGCAATTAATATATCTAAGACat---tgtttttatttattatatcagtattatgatatgagcattattgctatta-----tATCCACTGATAAATTAGAA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16319409 1600 + 178775436 TTTCCCAGTAA-------------------ACATTCATGCTTAAATGCCTCCAACAAAATAACATGTAATATTTGGGAATTTCGTGATAACTTGATGACTTTTATTATCAGAACCATATCAGAACCAAATAAAGAACA---C--GTTTATTGCATattaaatagaaatgataaaacttttcttaa----ccaaaacaaaaactt--------ttttttttaa-a---------tgcagtaaaCTGCATATTTTCTAGAAggcc----aacaacaaaaacaaacctctCTTT----AGTATTTTACGGTGCAAAATTGGAGA--------------------------------------------ATTTGTCCACATACAGGGATTTAAAATGGAATTatcaaatttcagattttaaactAAGTATGAAAAAGTGTTGTgatctaaaaattatttcaggcTTAAGATACCAAAGTGAACAAAAACACCTTCACATTTATATTCCACCTCTCAACACTCGCGCAAATACACAGAACCCAAAATATCTTTTGCAATTATCTTAATTACTGCTACCTTTGATTTATCTTACAAGGGTAAtgcatttaaaattgtaatttctcATTAATGTCAGTTAGGGTttacaggatttt-aaaaacattacttcTTTGTTGGTTGGTCtgatgttttaaatatg-tttgattCAAATAAT---------AGATGTTATAATAAC-----TA------------AAGGATCAGTTTCCATAGGGCCA-------------------------------------------------------------TAATTTTGCAATGCTAATAActactagattttttt---taaagataggtaT---TTCCCACAagcatatt--tgtatatattggCAGAAGGAATGGATATGTTAAAAAATGATTCAAA-CACAAATGGTTTCCTTCAACTTAATGTATTAAACTT----TGTGTTTGAAGCATTTCTCT-------GAAAACATGATGATGGAACATGCACTGGAAGAAGAATCTGAAAAGtcaaattttt-atataaggtcTG-TAATTCCTTTGCTGTGTGAATATTGACACACTGCTTAACATTGCTTAATCTTTCTGTGTGTTACTATATTCAAATTGGGAATTGCATTACTTGCTTTACATATCCTTCCGCAATTTATATGAAAACCAAATGGGATAACAGATATGATAGGCAATGAAAATTCCAAAAtgctaaattaataa---atgagt-gcTCTGTTTATCACTTACCAATCTAATATTTAATGAGCTACTACTCTATATGC--AGATA-----ATTTAGAAAAAGTACTCAAATGTGACAGTAGGAGAGATACATAAAATACGTTAAGTCCTATAAGAAAGGTTTAGTtcaaatgctaagagaattcaG---ACAGGGAAAGATAATTTTGACTGAGAGAGAGGACTAGG-AGGGAAAGTAGAAGTGATGCTATTTGAACTGGGTCTTGGGAAATACTAAGACCTGGATCTCAGATGA-GAAAACATGTATTAAGTAGGGGAGGAGGTCATGGATTTGAAGGTTAAGGGTTATCTATTGCCTGTTTTGAGTCCATGATATAATCCATTTCA---CTTTAGTTAACTAAAAGGATCACCTAAATtgtttaaa--------aggagaaaaaggaggagaagatCTAGAATAATCATATACCTTTCTACCAAGCAATTAATATATCTAagacat---tgtttttatttattacctCAGTGTTATGATATGAGTATTATTGCTATTA-----TATCCACTGATAgattagaa i papAnu2.chr5 C 0 I 2021 s chlSab2.chr27 19808443 1607 - 48547382 TTTCCCAGTAA-------------------ACATTCATGCTTAAATGCCTCCAACAAAATAACATGTAATATTTGAGAATTTCATGATAACTTGATGACTTTTATTACCAGAACCATATCAGAACCAAATAAAGAACA---CATGTTTATTGCATATTAAATAGAAATGGTAAAACTTTTCTTAA----CCAAAACAAAAAC----------TTTTTTAAAACA---------TGCAGTAAACTGCATATTTTCTAGAAGGCC----AACAACAAAAACAAACCTCTCTTTAATAAGTATTTTATGGTGCAAAATTGGAGA--------------------------------------------ATTTGTCCACATACAGGGATTTAAAATTGAACTATCACATTTCAGATTTTAAACTAAGTATGAAAAAGTGTTGTGATCTAAAAATTATTTCAGGCTTAAGATACCAAAGTGAGCAAAAATACCTTCACATTTATATTCCACCTCTCAACACTCGCGCAAATACACAGAACCCAAAATATCTTTTGCAATTATCTTAATTACTGCTACCTTTGATTTATCTTACAAGGGTAATGCATTTAAAATTGTAATTTCTCATTAATGTCAGTTAGGTTTTACAGGATTTT-AAAAACATTATTTCTTTGTTGGTTGGTCTGATGTTTTAAATATG-TTTGATTCAAATAAT-------AGAGATGTTATAATAAC-----TA------------AAGGATCAGTTTCCATAGGGCCA-------------------------------------------------------------TAATTTTGCAATGCTAATAACTACTAGATTTTTTT---TAAAGATAGGTAT---TTCCCACAAGCATATT--TGTATATATTGGCAGAAGGAATGGATATGTTGAAAAATGATTCAAA-CACAAATGGTTTCCTTCAACTTAATGTATTAAACTT--TGTGTGTTTGAAGCATTTCTCC--------AAAACATGATGATGGAACATGCATTGGAAGAAGAATCTAAAAAGTCAAATTTTT-ATATAAgttctg-taactcctttgctgtgtgaatattgacacattgcttaacattgcttaatctttctgtgtgttactatattcaaattgggaattgcattacttgctttacatatctttccacaatttatatgaaaaccaaatgggataacagatacgataggcaatgaaaattccaaaatgctaAATTAATAA---ATAAGT-GCTCTGTTTATCACTTACCAATCTAATATTTAATGAGCTACTACTCCATATGC--AGATA-----ATTTAGAAAAAGTACTCAAATGTGACAGTAGGAGAGATACATAAAATACGCTAAGTCCTATAAGAAAGGTTTAGTTCAAATGCTAAGAGAATTCAG---ACAGGGAAAGATAATTTTGACGGAGAGAGAGGACTAGG-AGGGAAAGTAGAAGTGATGCTATTTGAACTGGGTCTTGGGAAATACTAGGACCTGGATCTCAGATGA-GAAAACATGTATTAAGTAGGGGAGGAGGTCATGGATTTGAAGGTTAAGGGTTATCTATTGCCTGTTTTGAGTCCATGATATAATCCATTTCA---CTTTAGTTAACTAAAA-GATCACCTAAATTGTTTCAA--------AGGAGAAAAAGGAGTAGTAGATCTAGAATAACCATATACCTTTCTACCAAGCAATTAATATATCTAAGACAT---TGTTTTTATTTATTATATCGGTATTATGATATGAGCATTATTGCTATTA-----TATCCACTGATAGATTAGAA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21160435 1610 - 190850796 ATCTCCAGTAA-------------------ACATTCACGCTTAAATTTCTCCAAAAAAATA--ATGTAATATTTTGGAATTTCGAGATAACTTGATGACTTTTATTATCAGAA-CATATCAGAATGAAATAAAGAACA---C--GTTTATT-CATAT----TAGAAATGAGAAAATTTTTCTTAA----TCAAAACAAAGAT----------TTTTTTTTAA-A---------TGTAGTAAGTTGCCTATTTTCTAGAAGGTC----AACAACAAAAACAAACCTCTCTTTAATTAGTATTTTATGTTGCAAAATTCGAGA--------------------------------------------ATTTGTGTGCATACAAGGATTTAAAACTGAATCATCAAATTTCAGATTTT-AACTGAGTATGAAAAAATG-TATGATC-AAAAATTATTTTAAGTTTAAGATACCAAAGTGAACAAAAATACTTTCACATTTATATTCCACCTCTCAACACTTGCGCAAATACACAGAACTCAAAATATCTTTTGCAATTATCCTAATTACTGTTACCTTTGATTTATCTTACAAGGGTAATGCATTTAAAATTGTAATTTCTCATTAATGTCAGTTAGGTTTCACAGGATTTT-AAAAACATTACTTCTTTGTTGGTTGGTCTGATGTTTTAAATATG-TTTGATTCAAAGAATAGAGAATAGAGATGTTATAATAACTAGTTTA------------AAGGATCAGTTTCTATAGGGCCA-------------------------------------------------------------TAATTTTGCAATGCTAATAACTACTAGATGT-TTT---TAAAGATAGCTAT---TTCCCACAAGCGTATT--TGTATATATTGGCAGAAGGAATGGCTACATTAAAAAGTGATTCAAA-CACAAATGGTTTTCTTTAATTTAATGTTTTAAACTTTCTGTGTGTTTGAAGCATTTCTCC-------AAAAACAtgatggtggaacatgcattggaaaaagaatctgagaagtcaaatttttgatacaaggtcta-taactcctttgctgtgttaattttgacacattgcttaacattgcttaatctttctgt--gttactatatccaaattaggaattgcattacttgaatcacatatctttctacaatttatacgagaaccaaatgggataacagatatgataggcaatgaaaattccaaaaggctaaattaataa---ataggtGGCTCTGTTCATCATTTATCAATCTAATGTTTAATGAGCTACTACTCAATATCT--AGATA-----ATTTAGAAAACTTACCCAGATATGACAGTAGCAGAGATACATAAAATATGTTAAGTCCTATAAGAAAGGTGTAGTTAAAATGCTAAGAGAAATCAG---AGATGCATAGATAATTTTGACTGAGAGAGCGGAATAGG-AGAAAGAGTAGAAGTGATTCTATTTGAACTGAGTCTTAAGAAATACTAGGACCTGGATTTCAGATGA-GAAAACATGTTTTAAGTAGAAGAGGAAGGCATGGATTTGAGGGTTTAGGATTATCTATTGCCTGTTTTGACCCCATGATATGATATATTTTGCTTCTTTAGTTAACTAAAAGGTTCACCTAAATTGTTTAAAAGAAG---AGGAGAAAAAGGAGTAGAAGATGTATAATAATCATATGCCTTTTTACTAAGCAATT-ATATAT----GATAT---TATTTTTATCTATTACCTCAGTGTTGTGATATGAGTATTTTTGCTATTA-----TAT-CATTGATAGATTAGAA i calJac3.chr3 C 0 C 0 s mm10.chr5 49147473 1609 + 151834684 TTCCTCACTAACTGTGTTGATTCTTTTCCTGCAAACCTGCTTAGCTGTTTCCAATAAAATGGCATGTAGTGTTTGGGAATTTCATAATAGTTTAATGGCTTTAAACATCAGGACTACTTCATAATCAGATCAAAATAATAGCATATTTATTGTGTATCAAACCAAAATGGGCACA---TACTCAAATCCACATATTAAGAAGGTTTTATTTATTTTTTCAAA-ATAA----GACATAGCAATAGGAATA------AGAAACCCCTTTAAAAATAAA---GAAACCCTTTTTAATGAATATTTCAAGTCACAAAATGGGGAATCatgtatatgtatatatatatatatatatatatatatatatatatatatatatatatataAAGATAAGATTGCATCCACAAGTTTTATATTTT-AACACAGCATGAAAAA-TATTATGGTCTAAAATTGATTTCTAGCTCAATATATCAAAGTGAATAAAAATACTTTCACATTTATATTCTACCTCTCAACAA--GCGCAAATACACAGAACCCAAAATATCTTCTGCAATTATCTTAATTACTGTTACCTTTGATTTATCTTACAAGGGTAACGCATTTGAAATTATAATTTCTCATTACCATCAGTGAGATTTCACTGGATTTTCCAAAACATTGCCTCATTTTTGGTGGGTCAGATATTTTAAATGCATTTTGAGTCAGGAAAT-------AGAAATGTCTTAATGCC-----TAGATTTCATCT-CAAAGCTCAGTTTCTAGAGGGCTA-------------------------------------------------------------TGCTCTTGCAGTGGCAGGAAATATTAAAATCTCCCAGGGAAAGATATATCT---TTCAAACAAACATATT--TGAATGTATTAGTAGACAAAACTGCTGTGTTAAAAATGGATCTAAATCTAAAATTGCTTTTCTCAGTTGAATGCCTGTAACTTTTTCTATGAATAATGCTACTAGCC-----------------TACTAAAATATGCTGTGCAAGGAGAATGTGGAAAACAAAATTTTA-ACAT----CCTA-------CCTTTCTGGGTGAATTT--------TTTTTCATAGTGATTAACCTTAATGT--GTTGCCATTAACTAATTGTACAGaatattattttcattacagacctccccaggattgctatgagaaccaaatggg-taagaaatgtgaaatgtaatgaacactatgaagtA-TAAATTACTAAATGATGGGTGGCCCTGCCCATTTCCCACACATCAAGT-TATAAT-------TAATCAAAATAT--AAATAGAGTGAATAAGGAAAAGTACTAAAATTTGACACTACGAAAGATGAATGAAG------ATGTGTAACAAGACAGGGTTAATTCAAGTACTGTGAGAATTCAAAGGAAACGGAATAATTATTTTAATCAAGACAGTGGGATAGGTAGAGAAGGCAAATGAGATGCTGT-----------------GAAGGCTGGTGGCTGAACCTCAAGTTATAAAAAGGGGAGACAGGTATGGGAGGTTCTCCTAGATTTGAAGAGCACAGATTATCTACTGCTTGTTTTGATTATCTGGCATA---CATTTCA---CTTCAAT----------------------------AA--------------AAAGGAAAAACTAGAT----AATTATTGTATAC--TTTTAGCAATCTGTTTCTAGCTTCAAGACA----TGTTCTTATTGATCACCTTAGTCTTGAGAT---AGCAATATTGCCTTTATTTTTTATCAAAAGACTCATTAGAC i mm10.chr5 I 251 I 1 s canFam3.chr3 3744919 1579 - 91889043 ACCTCCAATAA-------------------TCACTCGTGCTGAAATGCTTCCAATCAAATGACCTGTTATATTTTGGGATTGAGTAATGTCTTGATGGCTTTTAATAT-----------TAGAAGCAAATAGTAAATC---ACTGTTTA-CGTGTATCAAGAAGAAAAAGAGAAAATTGTCCTAA----CTGATACAAAAGG----------AAAGTAAAAG-AAAAAAATAATGTAGCAAACTTTATATTTTATATAAGACC----ACCACCA---CCGAACCTCTGTGTAATCAGTATTTT--GTTTTAAAATTTGAGG--------------------------------------------ATATGT--------GGAGAGATAAGACTGCATCAAAATTTTTCAGATTTT-GACTTACTATGAGAAAACCTTTTGGTCCTAAAATTATTTCAAGCTCAAGACACCAAAGTGAACAAAAATACTTTCACATTTATATTCCACCTCTCAACACTTGAGCAAATACACAGAACCCAAAATATCTTTTGCAATTATCTTAATTACTGTTACCTTTGATTTATCTTACAAGGGTAATGCATTTGAAATTGTAATTTCTCATTAATGTCAGCTAGGTTTTACTGGATTTT-AAAAACATTACTTCTGTCTTGGTTGGTCTGATATTTTAAATATG-TGTGATTCAATGAAT------AAGAGATGCTAAAATAAC-----CAGTTTTCACCTGAAAGGAT--GTTTCTGTAGGGCCA-------------------------------------------------------------AGATTTTGCAATGTTAATAATTATTAAATTA-CAT---TAAAGATAAATGTATCTTCCCACAAGGGCATTAGTATATATATTGGTAGCA-TAATCAATATGCTAAACATTGATCTGAA-CTCAAGGTGACTTCTT------AATGTTTTGTACTTTCTGTGTGTTTGAAATATTTCTTCAGATGGGAAAAACAAGATGAtgggatgtgcactagaaaatgaaactggaaaatctagttttt-atttaaagtcta-taactccactgctgtgtgaattttggcatattgcttacca----------tctctggttcttactatctccaaattgaaaacgcttttgttttcattacagatatccctataa----tatgagaactgaatggaataataaatatgaaaggcagtaaaaattacaagatgctaaattaatgG---GTA----GCCCTCTCCATCACTCAGTAATTGAATATTTAATGAGAAACTACTAAATATACAGAGACA-----ATTCAAAAAACATACTCAAATTT-ACAATGGGAGAGGTACCTAAAATATGCCAACTGCTATAAGAACAGTTTAGTTCAAATGTTATCGGAGTTTGGAGGAAGGAAAAAAATGGGTTTGAATAAGAAAGA-GATAAGA-AGAGAA---CAAAGTAAAACAGCTTGAAATG-GTCTTGAAAAATACTAGGACCTGGACTTCAGATGA-GAAGGCATATGGCAGGTAGAGGAGGAGGTTATGGGTTTGCAGAGATAGGAAGATC----------------------ACACA-TGTATTTCATGTCTTCAGAGGACTGAGAGAATCACCTAAACCTTTTGAAAGAAGAGAAGAAGGAGGAGGAAGAAAAGAAATAGGATGATAAACTATCCTT-TACTAAACAATTAATACCCATAAGACATTAGTGTTTTTATCTAGTATCTCAACTTGATGATATAAGTAATATTTTCATTA-----TATTTATCTATGGATTAAA- i canFam3.chr3 C 0 C 0 a score=366684.000000 s hg38.chr4_KI270790v1_alt 42716 111 + 220246 AATTGAAATTACAACAAAAATTACTTGA-CTCCAAAACCAC----------------GGATCTCCCC---------TACATCC----------------------TGCTCTATTATTCTCTTGTA---------------------------------A-AATAGATTGTGGTTCTTTTTATTTCTGTAACTT s panTro4.chr4 21430263 111 + 193495092 AATTGAAATTACAACAAAAATTACTTGA-CTCCAAAACCAC----------------GGATCTCCCC---------TACATCC----------------------TGCTGTATTATTCTCTTGTA---------------------------------A-AATAGATTGTGGTTCTTTTTATTTCTGTAACTT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21606762 111 + 198332218 AATTGAAATTACAACAAAAATTACTTGA-CTCCAAAACCAC----------------GGCTCTCCCC---------TACATCC----------------------TGCTCTATTATTCTCTTGTA---------------------------------A-AATAGATTGTGGTTCTTTTTATTTCAGTAACTT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20218634 111 - 85365473 AATTGAAATTACAACAAAAATTACTTGA-CTCCAAAACCAC----------------GGCTCTCCTC---------TACATCC----------------------TGCTCTATTATTCTCTTGTA---------------------------------A-AATAGATTGTGGTTCTTTTTATTTCTGTAACTT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16684955 111 + 184069350 AATTGAAATTACAACAAAAATTACTTGA-CTCCAAAACCAT----------------GGCTCTCCCC---------TACATCC----------------------TGCTGTATTTTTCTCTTGTA---------------------------------A-AGTAGATTATGGTTCTTTTTATTTCTGTAACTT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20726912 111 + 189454096 AATTGAAATTACAACAAAAATTACTTGA-CTCCAAAACCAT----------------GGCTCTCCCC---------TACATCC----------------------TGCTGTATTTTTCTCTTGTA---------------------------------A-AGTAGATTATGGTTCTTTTTATTTCTGTAACTT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16323030 111 + 178775436 AATTGAAATTACAACAAAAATTACTTAT-CTCCAAAACCAT----------------GGCTCTCCCC---------TACATCC----------------------TGCTCTATTATTCTCTTGTA---------------------------------A-AGTAGATTatggttctttttatttctgtaactt i papAnu2.chr5 I 2021 C 0 s chlSab2.chr27 19810050 110 - 48547382 AATTGAAACTACAACAAAAATTACTTGA-CTCCAAAACCAT----------------AGCTCT-CCC---------TACATCC----------------------TGCTCTATTATTCTCTTGTA---------------------------------A-AGTAGATTATGGTTCTTTTTATTTCTGTAACTT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21162045 111 - 190850796 AATTGAAATTACAACAAAAATTACTTAA-CTCCAAAACCAG----------------AACTCTCCCC---------TACATCC----------------------TGCTTTATTATTCTCTTTTA---------------------------------A-AATAGATGGTGGTTCTTTTTATTTTTATAACTT i calJac3.chr3 C 0 C 0 s mm10.chr5 49149083 142 + 151834684 AATTAAGCATAC--CAAAAATTGCCGGATTTCCAAAGTCAT----------------GATTTTCACCTTATTGTATTACATTCCAATTCTTCTACAGATGATGGTTGTTCTAATGTATTTTTGTC---------------------------------ATTGTTGGTGGTGGTTATTCTAATTTCAGTGACTT i mm10.chr5 I 1 I 565 s canFam3.chr3 3746498 155 - 91889043 AACTGAAAATATACCAAGAATTACCTGG-ATCTAAGGTCACTTAGATCTACTCTAAGTGACCTCTAC---------TATACCT----------------------TACCTCATTATACTCTTTTACAAGTAGATTGTGGCTCATTATACTCTTTTTACA-AGTAGATTGTGGCTCGTTTTATTTTCAT----- i canFam3.chr3 C 0 C 0 a score=1341462.000000 s hg38.chr4_KI270790v1_alt 42827 429 + 220246 AAAACA-TTTTTCCATTGATGTC--ATTCTTTCAACTACACGTTGAGTGCAAAGATGAGGTGCTTGCTCTCAAATGGGAAGTAGGAAGTTGAACAGAGTTGTCCTTCTTCCATGGATTTAATGAGGAATTAAGATTCAGAAATGAGCTCTCATGTGCACCTATCCAG-CCCTCCAACACCCACTCCTCAATGGACTAAATATTTAACCTAGGTGGAAAAGAACTCACACATTGGAGGAGGACTAACATGTGACTTCCTTTGCACATGACCC-AGGATCATAAG----TGGGGGACCTTCTATTTGCTCTTTACATTCAGTCTTCTGCTCATTGTCACATATGCCCATGATCTTAAAA----------------------GCAAGCC----------------------ACTAGAGTGTGTTTC-TAAGAGCAT-AGCTATAATTCAGATAAATGTGGAGAAAATTTGTAATTCCGtgtcttagt s panTro4.chr4 21430374 430 + 193495092 AAAACA-TTTTTCCATTGATGTC--ATTCTTTCAACTACACGTTGAGTGCAAAGATGAGGTGCTTGCTCTCAAATGGGAAGTAGGAAGTTGAACAGAGTTGTCCTTCTTCCATGGATTTAATGAGGAATTAGGATTCAGAAATGAGCTCTCATGTGCACCTATCCAG-CCCTCCAACACCCACTCCTCAATGGACTAAATATTTAACCTAGGTGGAAAAGAACTCACACGTTGGAGGAGGACTGACATGTGACTTCCTTTGCACATGACCC-AGGATCATAAG----TGGGGGACCTTCTATTTGCTCTTTACATTCAGTCTTCTGCTCATTCTCACATATGCCCATGATTTTAAAA----------------------GCAAGCC----------------------ACTAGAGTGTGTTTC-TAAGAGCATAAGCTATAATTCAGATAAGTGTGGAGAAAATTTGTAATTCCGtgtcttagt i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21606873 430 + 198332218 AAAATG-CTTTTCCGTTGATGTC--ATTCCTGCAGCTACACGTTGAGTGCAAAGACAAGGTTCTTGCTCTCAAATGGGAAGTAGTAAGTTGAACAGAGTTGTCCTTCTTCCATGGATTTAATAAGGAATTAGGATTCAGAAATGAGCTCTCATGTGCACCTATCCAG-CCCTCCAACACCCACTCCTCAATGGACTAAATATTTAACTTAGGTGGAAAAGAACTCACACGTTGGAGGAGGACTAACATGTGACTTCCTTTGCACATGCCTC-AGGATCATAAG----TGGGGGGCCTTCTATTTGCTCTTTACATTCAGTCTTCTGCTCATTCTCACATATGCCCATGATTTTAAAA----------------------GCAAGCC----------------------ACTAGAGTGTGTTTC-Taagagcataagctataattcagataaatgtggagaaaatttgtaattctgtgtcttagt i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20218745 429 - 85365473 AAAACA-TTTTTCCATTGATGTC--ATTCTTGCAACCACACGTTGAGTACAAAGATGAGGTGCTTGCTCTGAAATGGGAAGAAGGAAGATGAACAGAGTTGTCCTTCTTCCATGGATTTAATGAGGAATTAGGATTCAGAAATGAGCTCTCATGTGCACCTATCCAG-CCCTCCAACACCCACTCCTCAATGGACTAAATATTTAACTTAGGTGGAAAAGAACTCGCATGTTGGAGGAGGACTAACATGTGACTTCCTTTGCACATGCCCC-AGGATCATAAG----TGGGGGGCCTTCTATTTGTCCTTTACATTCAGTCTCCTGCTTATTCTCACATATGCCCATGATTTTAAAA----------------------GCAAGTC----------------------ACTAAAGTGTGTTTC-Taagagcataagctataattcagataaacgt-gaggaaatttgtaattctgcatcttagt i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16685066 433 + 184069350 AAAACA-TTTTTCCATTGATGTCTTATTCTTGCAACTACACATTAAGTGCAAAGATGAGGTGCTTGCTCTTAAATGGGAAGTAGGAAGTTGAACAGAGTTGCCCTTCTTTCATGGATTTAATGAGGAATTAGGATTCAGAAAAGAGCTCTCATGTGCACCTATCCAG-CCCTCCAACACCCACTCCTCAGTGGACTAAATATTTAACTTAGGTGGAAAAGAACTCACACGTTGGAGGAGGACTAACATGTGACTTCCTCTGCACATGCCCC-AGGATCGTAAG----TGGGGGGCCTTCCATTTGTTCTTTACATTCAATCTTCTGCTCATTCTCACATATGCCCATGGCTTTAATA----------------------GCAAGCC----------------------ACTAGAGCGTATTTCTTAAGAGCATATGCTGTAATTCAGATAAATGTAGAGAAAATGTGTAATTCTGtgtcttagt i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20727023 433 + 189454096 AAAACA-TTTTTCCATTGATGTCTTATTCTTGCAACTACACATTAAGTGCAAAGATGAGGTGCTTGCTCTTAAATGGGAAGTAGGAAGTTGAACAGAGTTGCCCTTCTTTCACGGATTTAATGAGGAATTAGGATTCAGAAAAGAGCTCTCATGTGCACCTATCCAG-CCCTCCAACACCCACTCCTCAGTGGACTAAATATTTAACTTAGGTGGAAAAGAACTCACACGTTGGAGGAGGACTAACATGTGACTTCCTCTGCACATGCTCC-AGGATCGTAAG----TGGGGGGCCTTCCATTTGTTCTTTACATTCAATCTTCTGCTCATTCTCACATATGCCCATGGCTTTAATA----------------------GCAAGCC----------------------ACTAGAGCGTATTTCTTAAGAGCATATGCTATAATTCAGATAAATGTAGAGAAAATGTATAATTCTGtgtcttagt i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16323141 434 + 178775436 aaaacattttttccattgATGTCTTATTCTTGCAACTACACATTAAGTGCAAAGATGAGGTGCTTGCTCTTAAATGGGAAGTAGGAAGTTGAACAGCGTTGTCCTTCTTTGATGGATTTAATGAGGAATTAGGATTCAGAAATGAGCTCTCATGTGCACCTATCCAG-CCCTCCAACACCCACTCCTCAGTGGACTAAATATTTAACTTAGGTGGAAAAGAACTCACACGTCGGAGGAGGACTAACACGTGACTTCCTTTGCACACGCCCC-AGGATCGTAAG----TGGGGGGCCTTCTATTTGTTCTTTACATTCAATCTTCTGCTCATTCTCACATATGCCCATGGCTTTAATA----------------------GCAAGCC----------------------ACTAGAGCGTATTTCTTAAGAGCATATGCTATAATTCAGATAAATGTAGAGAAAATGTGTAAttctgtgtcttagt i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19810160 433 - 48547382 AAAACA-TTTTTCCATTGATGTCTTATTCTTGCAACTACACATTAAGTGCAAAGATGAGGTGCTTGCTCTTAAAAGGTAAGTAGGAAGTTGAACAGAGTTGTCCTTCTTTCACGGATTTAATGAGGCATTAGGATTCAGAAATGAGCTCTCATGTGCACCTATCCAG-CCCTCCAACACCCACTCCTCAGTGGACTAAATATTTAACTTAGGTGGAAAAGAACTCATACGTTGGAGGAGGACTAACATGTGACTTCCTTTGCACATGCCCC-AGGATCGTAAG----TGGGGGACCTTCCATTTGTTCTTTACATTCAATCTTCTGCTCATTCTCACATATGCCCATGATTTTAAAA----------------------GCAAGCC----------------------ACTAGAGCGTATTTCTTaagagcatatgctataattcagaaaaatgtagcgaaaatttgtaattctgtgtcttagt i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21162156 480 - 190850796 AGAACA-TGTTTCCATTGGTGTCTTATTCTTGCAACTGCATGATGAGTACAAAGATGAGGTGCTTGCTCTCAAATGGAAAGTGGGAAGTTGAACAGAGTTGCCCTTCTTCCATGGATTTAATGAGGAATTAGGACTCAGAAATGAGCTCTCATGTGCACTTATCCAACCCCCCCAATGCCCACTCCTCAGTGGATGAAATATTTCACTTAGGTAGAAAAAAACTCACATATTGGAGAAGGCCTAACATGTGACTTCCCTTACACATGCCAC-AGGGTCATAAGT-TTTGGGATGCCTTCCATTTGCTCTATACATTCAGTCTTC-GCTCATTCTCACATATGCCCATGATTTTAAAAATCTTTTCCATTCTCTCTCTCCGTATGCCTCCTTCTGCCCTTTTTAGACATTCTAGAGTATATTTCTTAATAGCATAAGCTATAATTCAGATAAATGTGGAGGATATTAGTAATTCCCtgtcttagt i calJac3.chr3 C 0 C 0 s canFam3.chr3 3746653 394 - 91889043 AGAGCATTTTTTACATCGTTGTT----CTGTGTGGTTGACTGATGACTGTGGAGA---------TATCCTCAAATGAAAAGTAGCAAGCTGACCAGAGGGGTCTTTCTGTAGCAGATTCAGTCATGAATCAGGGTTTGGAAATGAGCACTCACATGCACCCACTCGG-CCCTCAAACATCCATTCCTCAAAAGACTGAATGGTT-ATATAGATGGAAAAGCCCTCATGTCTTGGAGAAGGATGAGTACATGACTCCTCTTCCAAATGCCCCTAGAGTCGTAGGTATTTGGAAAGCT------------------------------CTCATTCTCA-ACCTGCCCATAGTTTTATAA----------------------GTGAGCC----------------------ACCAGAATATATTAGTGAGGAGCATACGTTATAATTCAGACAAATGTAAGAAAAAGTCATGATTCTAGTTATTAGT i canFam3.chr3 C 0 I 37 e mm10.chr5 49149225 565 + 151834684 I a score=2490609.000000 s hg38.chr4_KI270790v1_alt 43256 848 + 220246 ctgtttagtgttactatgaagagatacctgaggctgggtaatgtataaagaaaagttaatttggctcaccctcccacaggctgtaaaagaagcacagcaccagcatctgcttatggtgagggcttcaggatgcttccactcatggtggaagggaaaaaggagctagtgtgtgcagaggtgacgcagtgagagaggaagcaagagagagagtggagatgccaggttctgttttaacaaatagctcttaagggaactagcaga-gggagaactccctcattgccacaaggacaacaccaagcttttcaggagggatctaacccccttgagtcaaacatctcccccaattaggccacacttctaacagtgaggatcaaatttcaacatgaggtttgggttgggggttaatatgcaaaccatagcTTTCCCTTACTAGCAGAGTGACCCAAGGCAAGTTGCATACAATGGAGATAAAAATCCtgtgttaatcagcttgggctaccataacaaaataccatagacctgttggatcaaacagcagacattggtttctcacagtttcagaggctgagtagtctaagaccaaggggctggctaatgccattctgcgtcagggccctcttcctggcttgcagatggccgctttcttattatatcttcacatggtagagaaaaagtgatctctggtctcccttcttttactttcgaaagtgctaatctcatcatgggagccctaccttcatgatttcacccaaatctaattacctccaaggagccccacctgtaaaaatgatcacattgggtgttaaggcttcaacatacaaattttgagacacaattcagtccatggc s panTro4.chr4 21430804 848 + 193495092 ctgtttagtgttactatgaagagatacctgaggctgggtaatgtataaagaaaagtttatttggctcaccctcccacaggctgtacaagaagcacagcaccagcatctgcttatggtgagggcttcaggatgcttccactcatggtggaagggaaaaaggagctagtgtgtgcagaggtgacgcagtgagagaggaagcaagagagagagtggagatgccaggttctgttttaacaaacagctcttaagggaactagtaga-gggagaactccctcattaccacaaggacaacaccaagcttttcaggagggatctaacccccttgagtcaaacatctcccccaagtaggccacacttctaacagtgaggatcaaatttcaacatgaggtttgggttgggggctaatatgcaaaccatagcTTTCCCTTACTAGCAGAGTGACCCAAGGCAAGTTGCATACAATGGAGATAAAAATCCtgtgttaatcagcttgggctaccataacaaaacaccatagacctgttggatcaaacagcagacattggtttctcacagtttcagaggctgagtagtctaagatcaaggggctggctaatgccattctgcatgagggccctcttcctggcttgcagatggccgccttcttattatatcttcacatggtagagaaaaagtgatctctggtctcccttcttttactttcgaaagtgctaatctcatcatgggagccctaccttcatgatttcacccaaatctaattacctccaaggagccccacctgtaaaaatgatcacattgggggttaaggcttcaacatacaaattttgagacacaattcagtccatggc i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21607303 848 + 198332218 ctgtttagtgttactatgaagagatacctgaggctgggtaatttataaaggaaagtttatttggctcaccctcccacaggctgtacaagaagcacagcaccagcatctgctgatggtgagggctttaggatgcttccactcatggtgaaagggaaaaaggagctagtgtgtgcagaggtgacacagcgagagacgaagcaagagagagagtggagatgccaggttctgttttaacaaacagctcttacgggaactagtaga-gggagaactccctcattaccacaagggcaacaccaagcctttcaggagggatctaacccccttgagtcaaacatctcccccaattaggccatacttccaacagtgaggatcaaatttcaacatgaggtttgggttgggggctaatatgcaaaccatagctttcctttactagcggtgtgacctaaggcaagttgcataCAATGGAGATAAAAATCCtgtgttaatcagcttgggttaccataacaaaacaccatagaccagttggatcaaacagcagacattggtttctcacagtttcagaggctgagtagtctaagatcaaggggctggccaatgccattctgcctgagggccctcttcctggcttgcagatggccgccttcttattatatcttcacatggtagagaaaaagtgatctctggtctccgttcttttactttcaaaagtgctaatctcatcacaggagccccaccttcatgatttcacctaaatctaattacctccaaggagccccacctgtaaaaatgatcacactgggggttaaggcttcaacatacaaattttgagacacaattcagtccatggc i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20219174 847 - 85365473 ctgtttagtgttactatgaagagacacctgaggctgggtaatttataaagaaaagtttatttggttcaccctcccacaggctgtacaagaagcacagcaccagaatctgcttatggtgagggcttcaggatgcttccactcatggtggaaggggaaaaggagctagtgtgtgcagaggtgatacagtgagagaggaggcaagagagagagtggagatgccaggttctgttttaacaaacagctcttaggggaactagtaga-gggggaacaccctcattaccacaaggacaacactaagcctttcaggagggatctaacccccttaagtcaaacatctcccccaattaggacatacctctaacagtgaggatcaaatttcaacatgaggtttgggttgggggctaatatgcaaaccatagttttcccttactagcggtgtgacctaaggcaagttgcataCAATGGAGATAAAAATCCtgtgttaatcagcttgggttaccataacaaaacaccatagaccggttccatcaaacagcagacattggtttctcacagtttcagaggctgagtagtctaagatcaaggggctggccaacaccattctgtgtgagggctctcttcctggcttgcagatggccgccgccttcttatatcttcacagggtagagaaaaagtgatctctgttctcctttcctttactttcaagagtgatagtctcatcatgggagccccaccttcatgatttcacct-aatctaattacctccaaggagccccacctgtaaaaatgatcactttgggggttaaggcttcaacacagaaattttaagacacaattcagtccatggc i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16685499 847 + 184069350 ctgtttagtgttactatgaagggatacctgaggctgggttatttataaggaaaagtttatttggctcaccctcctacaggctgtacgagaagcacagcaccagcatctgcttatggcgagggcttcaggatgcttctgattatggtggaaggcgaaaaggagctagtgtgtgcagaggtgacacagtgagagaggaagcaagagacagagtggagatgccaggttctgttttaacaaacagctcttatgggaactagtaga-gggagaactccctcattaccacagggacaacgccaagcctttcaggagggatctaacccccttgagtcaaacacctcccccaattaggtcacacctctaacagtgaggatcaaatttcagcatgaggtttgggttgggggctaatatgcaaaccatagcTTTCCCTTACTAGTGGTATGATCAAAGGCAAGTCGCATACAATGGAGATTAAAATCCtgtgttaatcagcttgggctaccataac-aaacaccatagactgattggatcaaacagcagacattggtttctcacagtttcagaggctgagcagtctaagatcaaggagctggctaaagccattctgcatgagggccctcttcctggcttgtagatggctgccttcttactatatcttcacatggtagagaaaaagtgatctctggtctcccttcctttacttttaagagtgctagtctcatcatgggagccccaccttcatgatttcacctaaatataattacctccaagaagccccacctgtaaaaatgatcacatcggtggttaaggcttcaacataaaaattttgagacacaattcagtccatggc i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20727456 847 + 189454096 ctgtttagtgttactatgaagggatacctgaggctgggttatttataaagaaaagtttatttggctcaccctcctacaggctgtacgagaagcacagcaccagcatctgcttatggcgagggcttcaggatgcttctgcttatggtggaaggcgaaaaggagctagtgtgtgcagaggtgacacagtgagagaggaagcaagagacagagtggagatgccaggttctgttttaacaaacagctcttatgggaactagtaga-gggagaactccctcattaccacagggacaacgccaagcctttcaggagggatctaacccccttgagtcaaacacctcccccacttaggtcacacctctaacagtgaggatcaaatttcagcatgaggtttgggttgggggctaatatgcaaaccatagcTTTCCCTTACTAGTGGTATGATCAAAGGCAAGTCGCATACAATGGAGATTAAAATCCtgtgttaatcagcttgggctaccataac-aaacaccatagactgattggatcaaacagcagacattggtttctcacagtttcagaggctgagcagtctaagatcaaggagctggctaaagccattctgcatgagggccctcttcctggcttgtagatggctgccttcttactatatcttcacatggtagagaaaaagtgatctctggtctcccttcctttacttttaagagtgctagtctcatcatgggagccccaccttcatgatttcacctaaatataattacctccaagaagccccacctgtaaaaatgatcacatcggtggttaaggcttcaacataaaaattttgagacacaattcagtccatggc i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16323575 849 + 178775436 ctgtttagtGTTACTATGAAGggatacctgaggctgggtaatttataaagaaaagtttatttggctcacccTCCTACAGGCTGTACGAGAAGCacagcaccagcatctgcttaCGGCAAGGGCTTCAGGATGCTTCCGTTTATGGTGGAAGGCGAAAAGGAACTAGTGTGTGCAGAGGCGACACAGTGAGACAGGAAGCAAGAGACAGAGTGGAGATGCCAGGTTCTATTTTAACAAACAGCTCTTATGGGAATCAGTAGAGGGGAGAACTCCCTTATTACCACAAGGACAATGCCAAGCCTTTCAGGAGGGATCTAACCTCCTTGAATCAAACACCTCCCCCAATTAGGCCACAGCTCTAACGgtgaggatcaaatttcaacacgaGGTTTGGGTTGGGGACTAATATGCAAACCATAGCTTTCCCTTACTAGTGGTATGACCGAAGGCAAGTCACATACAATGGAGATAAAAATCCTGTGTTAATCAGcttgggctaccataacaaaacaccatagactgATTGGATTAAACAGCAGACATTGGTTTCTCACAGTTTCAGAGGCTgagcagtctgagatcaaggaGCTGGCTAATGCCATTCTGcatgagggccctcttcctggcttgcagatggctgccttcttacTATATCTTCACATGGTAGAGAAAAAGCGATCTCTGGTCTCCCTTCCTTTACTTTCAAGAGTGTTAGTCTCATCGTGGGAGCTTCACCTTCATGATTTCACCTAAATATAATTACCTCCAAGAAGCCCCACCTGCAAAAATgatcacattgggggttaaggcttcaacatataaattctgagacacaattcagtccatgaC i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19810593 848 - 48547382 ctgtttagtgttactatgaagggatacctgaggctggataatttataaagaaaagtttatttggttcaccctcccacaagctgtacaagaagcacagcaccagcatctgcttatggcgagggcttcaggatgcttccgtttatggtggaaggggaaaaggagctagtgtgtgcagaggtgacacagtgagacaggaagcaagagacaaagtggagatgccaggttctgttttaacaaacagctcttatgggaatcagtaga-gggagaactccctcattaccacaagaacaatgccaagcctttcaggagggatctaacccccttgagtcaaacacctcccccaattaggccacagctctaacagtgaggatcaaatttcaacatgaggtttgggttggggactaatatgcaaaccatagccttcccttactagtggtatgaccgaaggcaagtcacataCAATGGAGATAAAAATCTtgtgttaatcagcttgggctaccataacaaaacaacatagactgattggattaaacagtagacattggtttctcacagtttcagaggctgagcagtctaagatcaaggagctggctactgccattctgcatgagggccctcttcctggcttgcagatggctgccttcttactatatcttcacatggtagagaaaaagcaatctctggtctcccttcctttacttttaagagtgttagtctcattgtgggagcttcaccttcatgatttcacctaaatataattacctccaagaagccccacctgcaaaaatgatcactttgggggttaaggcttcaacatataaattctgagacacaattcagtccatgac i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21162636 841 - 190850796 ctgttcaacattactatgaat---tacctgaggctgagcaatttatagagaaaagtttatttggcccacccttacagaggctgtacaagaagcacagcactagcatctgcttatggtgatggcttcaggatgcttccactcatgctggaaggggaaaaggtactagt-tgtgcagagatgatacagtgagagaagcagcaagagagaaagtggaaacgccaggttctgttttaacaaacag-gctttcgggaactcataga-gggagaaatcccttattaccacggagatagcacaaagcctttcagaagggatctaaccgccttgagtcaaacacctccacca-ttaggcaatacctctaacactgaggatcagatttcaacatgaggtttggcttggctgctaatatgcaaaccatagcTTTCTcttaccagctatgttacctaaggcaagttgcataCAGTGGAGCTAAAAATCCtgtgttaatcagcttgggctaccataatagaacaccatagactggttggctcaaacagctgacattggtttcctacagttccagagcccaagtagtctaagatcaaggggctggccaatgccattctgtgttaggaccctcttcctgacttgcagaaggctaccttcttactatatttttacatagtagagaaaaagtaatctctggtttcccttcctttactttcaagagtgctaatcttgtcatgggaaccccatcttcatgattttacctaaatctaattacctcccaggagcaccacctctaaaaatgatcacattgg-agttaaggcttcaacataaaaaatgtgagacacaattcagtccatggc i calJac3.chr3 C 0 C 0 e mm10.chr5 49149225 565 + 151834684 I e canFam3.chr3 3747047 37 - 91889043 I a score=1532506.000000 s hg38.chr4_KI270790v1_alt 44104 450 + 220246 aAATACCGTAGGGTAGTTTCAAACTTTCATAAACATAAATATGTGAACTATTTAGCCTCAAACCTGGCATATAGGTACATTGAAATGGCAACTATTTGTGTCATACGGCTATTCATGTTTTACATCCACAT-AGTACCATCTCCTACAACATTCACCTAAAGCAACTGATTGG-----CAATGACATTCATTACAGATTTATAGCTattcaataatcatttacagaata--ctctgtgt-ctggcactgtgttgggtg-aggagaggagaaagtatataaaaagttgagtaatttaaagctcttatttttgaaaaactcatagaaaaatgaggagtgcagagagctctaaagagattgctgaaatataaaatgggattagaccatggggaaaactggtgactga-ttctgccagaccaaa------------tcaaagaaagctttaaagagaagtgatgtttcaagcagctc s panTro4.chr4 21431652 462 + 193495092 aAATACTGTAGGGTAGTTTCAAACTTTCATAAACATAAATATGTGAACTATTTAGCCTCAAACCTGGCATATAGGTACATTGGAATGGCAACTATTTGTGTCATATGGCTATTCATGTTTTACATCCACAT-AGTACCATCTCCTACAACATTCACCTAAAGCAATTGATTGG-----CAATGACATTCATTACAGATTTATAGCTattcaataatcatttacagaata--ctctgtgt-ctggcactgtgttgggtg-aggagaggagaaagtatataaaaagttgagtaatttaaagctcttatttttgaaaaactcatagaaaaatgaggagtacagagagctctaaagagattgctgaaatataaaatgggattagaccatggggaaaactggtgactga-ttctgccagaccaaatcaaagctttggtcaaagaaagctttaaagagaagtgatgtttcaagcagctc i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21608151 450 + 198332218 aAATACTGTAGGGTAGTTTCAAACTTTCATAAACATAAATATGTGAACTATTTAGCCTCAAACCTGGCATACAGGTACACTGAAATGGCAACTATTTGTGTCACATGGCTATTCATGTTTTACATCCACAT-GGTACCATCTCCTACAACATTCACCTAAAGCAACTGATTGG-----CAATGCCATTCATTACAGATTTATAGCTattcagtaatcatttacagaata--ctctgtgt-ctggcactgtgttgggtg-aggagaggagaaagtatataaaaagttgagtaatttaaaactcttatttttgaaaagctcatagaaaaatgaggagtacagagagctctaaagagattgctgaaatataaaatgggattagaccatggggaaaactggtgactga-ttctgccagaccaaa------------tcaaagaaagctttaaagagaagtgatgtttcaagcagctc i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20220021 450 - 85365473 aAATACTGTAGGGTAGTTTCAAACTTTCATAAATATAAATATGTGAACTATTTAGCCTCAAACCTGACATATAGGTACACTGAAATGGCAACTATTTGTGTCATATGGCTATTCATGTTTTACATCCACAT-AGTGCCATCTCCTACAACATTCACCTAACGCAACTGATTGG-----CAATGACATTCATTTCAGATTTATAGCTattccataatcatttacagaata--ccctgtgt-ctggcactgtgttgggtg-aagagaggagaaagtatataaaaagttgagtaatttaaagctcttatttttgaaaagctcatagaaaaatgaggagtacagagagctctaaagagattgctgaaatataaaatcggattagaccatggggaaaactggtgactga-ttttgccagaccaaa------------tcaaagaaagctttaaagagaagtgatgtttcaagcagctc i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16686346 450 + 184069350 aAATACTGTAGGTTAGTTTCAAACTTTCATAAATATAAATATGTGAACTATTTAGCCTCAAACCTGGCATATAGGTACACTGAAATGGCAACTATTTGTGTCATATGGATATTCATGTTTTACATACACAT-TGTGCCAT-TCCTACAACATTCATCTAAAGCAACTGATTGG-----CAATGACATTCATTACAGATTTATAGCTattcaataatcatttacagaata--ctctgtgt-ctggcacggtgttgggtgcaggagaggagaaagtatataaaaagttgagaaatttaaagctcttatttttgaaaagctcatagaagaatgaggagtagagagagctctgaagagattactgaaatataaaatgggattagaccatggggaaaactggtgactga-ttctgctggagcaaa------------tcaaagaaagccttaaagagaagtgatgctttaagcagctc i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20728303 450 + 189454096 aAATACTGTAGGTTAGTTTCAAACTTTCGTAAATATAAATATGTGAACTATTTAGCCTCAAACCTGGCATATAGGTACACTGAAATGGCAACTATTTGTGTCATATGGATATTCATGTTTTACATACACAT-TGTACCAT-TCCTACAACATTCATCTAAAGCAACTGATTGG-----CAATGACATTCATTACAGATTTATAGCTattcaataatcatttacagaata--ctctgtgt-ctggcacggtgttgggtgcaggagaggagaaagtatataaaaagttgagaaatttaaagctcttatttttgaaaagctcatagaagaatgaggagtagagagagctctaaagagattactgaaatataaaatgggattagaccatggggaaaactggtgactga-ttctgctggagcaaa------------tcaaagaaagccttaaagagaagtgatgctttaagcagctc i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16324424 451 + 178775436 AAATACTGTAGGGTAGTTTCAAactttcataaatataaatatgtgaacTATTTAGCCTCAAACCTGGCATATAGGTACACTGAAATGTCAACTATTTGTGTCATATGGATATTCATGTTTTACATCCACAT-TGTACCATCTCCTACAACATTCATCTAAAGCAACTGATTGG-----CAACGACATTCATTACAGATTTACAGCTATTCAATAATCATTTACAGAATA--CTCTGTGT-CTGGCACGGTGTTGGGTGCAGGAGAGGAGAAAGTATATAAAAAGTTGAGAAATTTAAAGctcttatttttgaaaagctCATAGAAGAATGAGGAGTAGAGAGAGCTCTAAAGAAattactgaaatataaaatggGATTAGACCATGGGGAAAACTGGTGACTGA-TTCTGCTGGAGCAAA------------TCAAAGAAAGCCTTAAAGAGAATTGATGCTTTAAGCAGCTC i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19811441 448 - 48547382 aAATACTGTAGGGTAGTTTCAAACTTTCATAATTATAAATATATGAACTATTTAGCCTCAAACCTGGCATATAAGTACACGGAAATGGCAACTATTTTTGTCATATGGCTATTCATGTTTTATATCCACAT-AGTACCATCTCCTACAACCTTCACCTAAAGCAACTGATTGG-----CAATGACATTCATTACAGATTTACAGCTattcaacaatcatttacagaata--ctctgtgt-ctggcatggtgttgggtgcaggagaggagaaagtatataaaaagttgagaaatttaaagctcttatttttgaaaagctcatagaagaat---gagtagagagagctctaaagagattactgaaatataaaatgggattaggccatggggaaaactggtgactga-ttctgctggagcaaa------------tcaaagaaagccttaaagagaagtgatgctttaagcagctc i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21163477 453 - 190850796 aAATACTGTAGGGTAGTTTCAAACTTTCATAAATATAAATATGTGAACTATTTAGTCTCGAACCTGGCATATAGGTACACTGAAATGGCAACTATTTGTGTCATATGGCTATTCATGTTTTATAACCACAT-AGTACCATCTCCTACAACATTCACCTAAAGCAATTGATTGG-----CAATGGCATTCATTACTGTttcataactattcaataatcatttacagaatagtctgtgtgt-ctggtactgtgttgggtgctggagaggagaaagtatataacaagttaagtaatttaaagttcttatccttgaaatgctcatagtaaaataaggagtagacagaactctaaggagattactgacatatataatgggattagaccatggggaaaactggtgactaa-ttctgccagagaaaa------------tcaaagacagctttaaagagaagtgatgtttcaagcagctc i calJac3.chr3 C 0 C 0 s canFam3.chr3 3747084 456 - 91889043 AAGTGCCATAGAATCACTTGAAGCTTTCATAAATACGAATTTGTGTGCTGCTTAGCCTTAAGCCTGGTTTACAAGTACTCCAAAGTGGCAACTGTTTGTGTTATATGGCTCTTCGTGTTTTATATCCCCATCAGTACCATCTCCTACAATGTACACCTAAAGCAACGGATTCGTGTATCGATGACATCCACTGTAGTTTCAAAGATattcaatagtcatttacagagaa--ccctatgtgttagcgctgtattgggtactagagaggagaaagactatgaagagatgagtaaaataaagtctctacccttgagaagctcatgggatggtgaggagtagaaagaactctaaggaaatcgctgggatggaaaatgggagaaggacctggaggaaac--atgtctaatttctgtttgagaaaa------------t-aataaaagtatcaacgaggagtgacatatcaggtgaCTC i canFam3.chr3 I 37 I 216 e mm10.chr5 49149225 565 + 151834684 I a score=447412.000000 s hg38.chr4_KI270790v1_alt 44554 157 + 220246 tgga--------tatccaagtagaatttatctgccagatagcacaaaaaaagaaggatgctctaagtagaaacaatagtatctgataagcagggaagcatgagcaagcaaagaactgtagggaaact-aatgGGAGACAGGAATTGTTGGAGCAACAGTCACATAC s panTro4.chr4 21432114 157 + 193495092 tgga--------tatccaagtagaatttatctgccagatagcacaaaaaaagaaggatgctctaagtagaaacaatagtatctgataagcagggaagcatgagcaagcaaagaactgtagggaaact-aatgGGAGACAGGAATTGTTGGAGCAACAGTCACATAC i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21608601 157 + 198332218 tgga--------tatctaagtagaatttatctgccagatagcacaaaaaaagaaggatgccctaagtagaaacaatagtatctgaaaagcagggaagcatgagcaagcaaagaactgtagggaaact-aatgAGAGACAGGAATTTTTGGAGCAACAGTCACATAC i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20220471 157 - 85365473 tgga--------tatccaagtagaatttatctgccagatagcacaaaaaaagaaggatgctctaagtagaaacaatagtatctgataagcagggaagcatgagcaagcaaagaactgtagggaaact-aatgAGAGACAGGAATTGTTGGAGCAACAGTTACATAC i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16686796 165 + 184069350 tggatatccaagtatccaagtagaatttatctgccagacagcacaaaaaaagaaggatgctctaagtagaaagaatagtatctgataagcagagaagcatgcgcaaacaaagaactgcagggaaact-aatgACAGACAGGAATTGTTGGAGCAACAGTCACATAT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20728753 165 + 189454096 tggatatccaagtatccaagtagaatttatctgccagacagcacaaaaaaagaaggatgctctaggtagaaagaatagaatctgataagcagagaagcatgcgcaaacaaagaactgcagggaaact-aatgACAGACAGGAATTGTTGGAGCAACAGTCACATAT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16324875 157 + 178775436 TGGA--------TATCCAAGTAGAATTTATCTGCCAGACAGCACaaaaaaaGAAGGATGCTCTAAGTAGAAAGAATAGTATCTGATAAGCAGAGAAGTGTGCGCAAACAAAGAACTGCAGGGAAACT-AATGACAGACAGGAATTGTTGGAGCAACAGTCACATAT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19811889 157 - 48547382 tgga--------tatccaagtagaatttatctgccagacagcacaaaaaaagaaggatgctctaagtagaaagaatagtaTCTAATAAGCAGAGAAGCATGTGCAAACAGAGAACTGTAGGGAAACT-AATGAGAGACACGAATTGTTGGCGCAACAGTCACATAT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21163930 151 - 190850796 tgga--------tatccaagtagaatttttctgccagatagcac-aaaaaagaggaatgctctaggtagaaataatcgtttctgatgagcagggaagcatg----agcaaagaactgtgAAGAAACTAAATAAGAGGCA--AATTGTTGGAGTAACAGTCACATAT i calJac3.chr3 C 0 C 0 e mm10.chr5 49149225 565 + 151834684 I e canFam3.chr3 3747540 216 - 91889043 I a score=623006.000000 s hg38.chr4_KI270790v1_alt 44711 209 + 220246 AGGAACAGGTAAAGAAACACAGTCAATGTCA---CTGAGAACTGGATTGT-GAGATCCCTCTGATTCCACAATCAAGAGACAGGGCGGAGCCGAAAGTATTTTTAATTTAATGTTGGCAATAGTGTGAAGAATGAGTTGGTCTGGGATGAGACAGGTGGCAA-GAGGCCAGTCAGGACACCAGTGTCACAGTCTCTAGACAACAG-GTGAATAGA s panTro4.chr4 21432271 209 + 193495092 AGGAACAGGTAAAGAAACACAGTCAATGTCA---CTGAGATCTGGATTGT-GAGATCCCTCTGATTCCACAATCAAGAGACAGGGCGGAGCCGAAAGTATTTTTAATTTAATGTTGGCAATAGTGTGAAGAATGAGTTGGTCTGGGATGAGACAGGTGGCAA-GAAGCCAGTCAGGACACCAGTGTCACAGTCTCTAGACAACAG-GTGAATAGA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21608758 183 + 198332218 AGGAACAGGTAAAGAAACACAGTCAATGTCA---CTGAGATCTGGATTGT-GAGATCCCTCTGATTCCACAATCAAGAGACAGGGGGGAGCCGAAAGTATTTTTAATTTAATGTTGGCAATAGTGTGAAGAATGAGTTGGTCTGGGACGAGACAGGTGGCAAGGAGGCCAGTCAGGACACCAG----------------------------TAGA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20220628 210 - 85365473 AGGAACAGGTAAAGAAACACAGTCAATGTCA---CTGAGATCTGGATTGT-GAGATCCCTCTGATTCCACAATCAAGAGACAGGGCAGAGCCGAAAGTATTTTTAATTTAATGTTGGCAATAGTGTGAAGAATGAGTTGGTCTGGGACGAGATAGGTGGCAAGGAGGCCAGGCAGGACACCAGTGTCACAGTCTCTAGAAAACAG-GTGAATAGA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16686961 206 + 184069350 AGGAACAGGTAAAGAAACA----CAGTGTCA---CTGAGATCTGGATTGT-GAGATCCCTCTGATTCCACAATCAAGAGACAGGGCGGAGCCAAAAGTATTTTTAATTTAATGTTGGCAATGGTATAAAGAATGAGTTGGTCTGGGACGAGACGAGTGGTAAGGAGGCCAGTGAGGACACCAGTGTCACAGTCTCTAGACAACAG-GTGAATAGA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20728918 206 + 189454096 AGGAACAGGTAAAGAAACA----CAGTGTCG---CTGAGATCTGGATTGT-GAGATCCCTCTGATTCCACAATCAAGAGACAGGGCGGAGCCAAAAGTATTTTTAATTTAATGTTGGCAATGGTATAAAGAATGAGTTGGTCTGGGACGAGACGAGTGGTAAGGAGGCCAGTGAGGACACCAGTGTCACAGTCTCTAGACAACAG-GTGAATAGA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16325032 206 + 178775436 AGGAACAGGTAAAGAAACA----CAGTGTCA---CTGAGATCTGGATTGT-GAGATCCCTCTGATACCACAATCAAGAGACAGGGCGGAgccaaaagtatttttaatttaatgttggCAATGGTATAAAGAATGAGTTGGTCTGGGACGAGAGGAGTGGTAAGGAGGCCAGTGAGGACACCAGTGTCACAGTCTCTAGACAACAG-GTGAATAGa i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19812046 210 - 48547382 AGGAACAGGTAAAGAAACACAGTCAGTGTCA---CTGAGATCTGGATTGT-GAGATCCCTCTGATTCCACAATCAAGAGACAGGGCGGAGCCAAAAGTATTTTTAATTTAATGTTGGCAATGGTATAAAGAATGAGTTGGTCTGGGACGAGATGGGTGGTAAGGAGGCCAGTGAGGACACCAGTGTCACAGTCTCTAGAGAGCAG-GAGAATAGA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21164081 210 - 190850796 AGGAACAGGAAAAGAAATGCAGTGAATGTCA---CTGAGATCTGGATTGT-AAGATCCCTCTGATTCCACAATCAAGAGACAGGGAGGAGCCAAAAGTATTTTTAATTTGATGTTGTCAATACTGTGAAGAATGAGTTGGTCTGGGCAGTGACGGATGGCAAGGAGGCCAGTCAAGACACCAGTGTCACAGTCTCTAGAAAATAG-GTGAACAGA i calJac3.chr3 C 0 C 0 s canFam3.chr3 3747756 211 - 91889043 aaaaAAAGAGAAGGAAATGAGAGGATAGTTATACTTGAGCTCCAGATCATAAAGAGGCCAATTGTGCCACAATAAACAT-TAGAAAAAACCAAAAACTATTTATAAGTGAATGTTGGCCACAGTGTGAAGTCTGGGTCAGTCTGGGGAGAGACTGGCATCAAGGGGACGAGTTAG---ACAAAAATGATGGATTCAAGACCGTAGTGGAAATAAA i canFam3.chr3 I 216 I 506 e mm10.chr5 49149225 565 + 151834684 I a score=1299634.000000 s hg38.chr4_KI270790v1_alt 44920 443 + 220246 CCTATtgatatggtttggatttgtatccctacccaaatctcatgtcaaattgtaattcccagtgttggaagaggggcctattgggaagtgattagatcatgggagtgggcttcccccttgctattcttgtg-cggtgagtgagttctcaggagatctggttgtttaaaagtttatagcacctcccccttcgctctcttcctcctgctccacccatgtaagacatgtctgcttccccattcgccatccaccatgattgtaagtttcctgagtcctccccagccaagcttcctgtacagtttatggaactgtcagccaattaaaccttctttcttt--ataaattacccagtatcagatagttcttcatatcaatgtgagaacagactaatacaCTTATACAAGGCAGTAGAGGTAGAAAGGAAGAGACAATACTTAGAGACATTTGG s panTro4.chr4 21432480 443 + 193495092 CCTATtgatatggtttggatttgtatccctacccaaatctcatgtcaaattgtaattcccagtgttggaagaggggcctattgggaagtgattagatcatggaagtgggcttcccccttgctattcttgtg-tggtgagtgagttctcaggagatctggttgtttaaaagtttatagcacctcccccttcactctcttcctcctgctccatccatgtaagacatgtctgcttccccattcgccgtccaccatgattgtaagtttcctgaggcctccccagccaagcttcctgtacagcttatggaactgtcagccaattaaaccttctttcttt--ataaattacccagtatcacatagttcttcatatcaatgtgagaacagactaatacaCTTATACAAGGCAGTGGAGGTAGAAAGGAAGAGACAATACTTAGAGACATTTGG i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21608941 443 + 198332218 CCTATtgatatggtttggatttgtatccctatccaaatctcatgtcaaattataatgcccagtgttggaggaggggcccattgggaagtgattagatgatgggagtgggcttcccccttgctgttcttgtg-tggtgagtgagttctcaggagatctggttgtttaaaagtttatagcacctcccccttcgctctcttcctcctgctccacccacgtaagacatgtctgcttccccattcgccatccaccataattgtaagtttcctgaggcctccccagccatgcttcctgtacagcttatggaactgtcagccaattaaacctttttttttt--ataaattacccagtatcagatagttcttcatagcaatgtgagaacagactaatacaCTTATACAAGACAGTGGAGGTAGAAAGGAAGAGACAATACTTAGAGACATTTGG i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20220838 443 - 85365473 CCTATtgatatggtttggatttgtatccctatccaaatctcatgtcaaattgtaattcccagtgttggaagaggggtctattgggaagtgattagatcatgggagtgggcttccctcttgctgttcttgtg-tggcgagtgagttctcaggagatctggttgtttaaaagtttatagcacctcccccttcgctctcttcctcctgctccacccatgtaagacatgtctgcttccccattcaccgtccaccatgatggtaagtttcctgaggcctccccagccatgcttcctgtacagcttatggaactgtgagccaatgaaacctttttacttt--ataaattacccagcatccgatagttcttcatagcaatgtgagaacagactaatacaCTTATACAAGGCAGTGGAGGTAGAAAGGAAGAGACAATACTTAGAGAAATTTGG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16687167 443 + 184069350 CCTATtgatatggtttggatttggatccctatccaaatctcatgtcaaactgtaattctcagtgttggaggaggggcctattgggaggtgattagatcatggcagtgggcttcccccgtgctgttcttgcg-tggtgagtgagttctcaggagatttggttgtttaaaagtttatagcacctcccgcttcactctcttcctcctgttccgcccgtgtaagacatgtctgcttccccattcaacacccaccatgattgcaagtttcctgaggcctccctagccctgcttcctgtacagcttatagaactgtgaaccaattaaactttttttcttt--ataaattacccagtatcaggtagttcttcatagcaatgtgagaacagactaatacaCTTATACAAGGCAGTGGAGATAGAAAGGAAGAGACAATACTTAGAGACATTTGG i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20729124 443 + 189454096 CCTATtgatatggtttggatttggatccctatccaaatctcatgtcaaactgtaattctcagtgttggaggaggggcctattgggaagtgattagatcatggcagtgggcttcccccatgctgttcttgcg-tggtgagtgagttctcaggagatttggttgtttaaaagtttatagcacctcccgcttcactctcttcctcctgttccgcccgtgtaagacatgtctgcttccccattcaacacccaccatgattgcaagtttcctgaggcctccctagccctgcttcctgtacagcttatagaactgtgaaccaattaaactttttttcttt--ataaattacccagtatcaggtagttcttcatagcaatgtgagaacagactaatacaCTTATACAAGGCAGTGGAGATAGAAAGGAAGAGACAATACTTAGAGACATTTGG i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16325238 443 + 178775436 cctattgatatggtttggatttggatccctatccaaatctcatgtcaaattgtaattctcagtgttggaggaggggcctattgggaggtgattagatcatggcaGTGGgcttctcccatgctgttcttgca-tggtgagtgagttctcaggagatctggttgtttaaaagtttataGCACCTCCcgcttcactctcttcctcctgctccacccGTGTAAGACATGTCTGCTTCCCCATTCAAcatccaccatgattgcaagtttcctgaggcctccctagccctgcttcctgtacagcttatagaactgtgaaccaattaaactttttttcttt--ataaattacccagtatcaggtagttcttcatagcaatgtgagaacagactaatacacttatACAAGGCAGTGGAGATAGAAAGGAAGAGACAATACTTAGAGACATTTGG i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19812256 437 - 48547382 CCTATtgacatggtttgtatttggatccctatccaaatctcatgtcaaattgtaattctcagtgttggaggaggggcctattgggaggtgattagatcatggcagtgggcttcccccgtgctgttcttgtg-tggtgagtgagttctcaggagatctggttgtttaaaagtttatagcacctcccgcttcactctcttcctcctgctccacccgtgtaagacatgtctgcttccccattcgacatccaccatgattgtaagtttcctgaggcctccctagccttgcttcctgtacagcttatggaactgtgaaccaattaaactttttttcttt--ataaattacccagtatcagatagttcttcatagcaatgtgagaatagactaa------tataCAAGGCAGTGGAGATAGAAAGAAAGAGACAATACTTAGAGACATTTGG i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21164291 443 - 190850796 CTTACtggtatggtttcgatttgtacacctacccaaaccttacgtcaaattgtaattcccagtgttggaggagggacctgttgggaggtgattggatcgtgggggtaagctttgcccttgctattcttgtgatggtgagtgagttctcaggatatctggttgttt-aaagtgtatagaacctttctcttcactctcttcctcttgctccacccatataagttgtacctgcttcccc-tttgccctccaccatgattgtaagcttgctgaggcctccccagccatgcttcctgtacagcccatggaactgtgagccaattaaccccttttttttttaacaaattacgcagtatcaggtagttttttatagcaatgtgagaaccgactaatataCTTATAGAAGGT-GTGGTGGTAGAAAGGAAGAGACAAGACTCAGAGACATTTGG i calJac3.chr3 C 0 C 0 e mm10.chr5 49149225 565 + 151834684 I e canFam3.chr3 3747967 506 - 91889043 I a score=3585325.000000 s hg38.chr4_KI270790v1_alt 45363 1144 + 220246 GAGTAAGAAGACTTAGAGCTTCCATTTCA-GGTGGATTGAGAGATTTA---CTCCTGATGAGAGGTCAAAGGATTCCTATTGAACCAGACATCAGTTGCTGGGGAACAGTCA---TATGTGACTGCAACATCAAGGAACCCACAAATGCAGCCTCGCACACATACAGGACATAAAGCCAAACTGCAAAAGGTAACACATCAAAATACCT-CTATATTGTGTAATGCCAGATTTGTGTAAATCAGAAAAGAACTGCCAGGCTCACCAACAACCTC--------ATTTATATTACGGTAACTATCAATACCGAAAACTGTTATTTCCTATTATATTTTTAAAAAGTCAAATTAATAAACTTCAATTATGAACAACCAGCATTT-ATTA---------------------------------------------ATTATCTCCTATAATCACTATGACAAAGATAGTTAATTCCCTGCCCGGTATATATGCTTGCTTCTACTTTAAGAACAAATCCACAATTTTATTAAGATTAGCAA-GTACCCAATTTAataaatatatatgtgtagatctatatattatatagatatgtgtacatttgtgtatatatacacatacctata------------tTTTTTCCTTCTCTCATGAAGCTAGGGGTGGCCAATGAGATATGAATGGAAGCCACTGGCTGATGTATCTGAGGACCTCTTTATAGGGGTCTAGACTTATATGGAAGGGGGCCCATTGTCCTCCCTGCCACCCCCTCTTTCTTGCT-TCTTGGA-TGAATTTGTAAAGGCCAGAACTCATGAATAGACACAAGCACCAATCTTAGTAGAATAAAACAAAACAAA-----------------------------------ACAAAAAACCTTAGTATACATAAT--AAAAATTTAACACTAAGTTGTATCAGCTAACACTATTTGGATTTTCTGATGTGTACAATGCAACCTAATTAACATGTCATATAGCCAGCATCATGCTTAGAGCCAGGGAAAGCAAAGATAACTAAAATACATAAACCATCTGAAATACCACAGGATAGGGAATATAACTTT-AAAAACAATA-CCTTTCCATTCC-CCACCCAAATAGTCTAATATAAACTGAAAACTGGATGAGGATGGAAGTTA-CTTTGTAGTCACGACAATATTGAGTATCCT-GAGGAATCAGTTCTCTATCA-AGTAGCGTGAGTGATAACTCATACCTCATCTCAAAGCTTAACATTTTT s panTro4.chr4 21432923 1144 + 193495092 GAGTAAGAAGACTTAGAGCTTCCATTTTA-GGTGGATTGAGAGGTTTA---CTCCTGATGAGAGGTCAAAGGATTCCTATTGAACCAGATATCAGTTGCTGGGGAACAGTCA---TTTGTGACTGCAACATCAAGGAACCCACAAATGCAGCCTCGCACACATACAGGACATAAAGCCAAACTGCAAAAGGTAACACATCAAAATACCT-CTATATTGTGTAATGCCAGATTTGTGTAAATCAGAAAAGAACTGCCAGGCTCACCAACAACCTC--------ATTTATATCACGGTAACTATCAATACCGAAAACTGTTATTTCCTATTATATTTTTAAAAAGTCAAATTAATAAACTTCAATTATGAACAACCAGCATTT-ATTA---------------------------------------------ATTATCTCCTATAGTCACTATGACAAAGATAGTTAATTCCCTGCCCAGTATATATGCTTGCTTCTACTTTAAGAACAAAACCACAATTTTATTAAGATTAGCAA-GTACCCAATTTAATGAatatatatgtgtagatctatatattatatagatatgtgtacatttgtgtatacatacacatacctata------------tTTTTTCCTTCTCTCATGAAGCTAGGGGTGGCCAATGAGATATGAATGGAAACCACTGGCTGATGTATCTGAGGACCTCTTTATAGGGGTCTAGACTTATGTGGAAGGCGGCCCGTTGTCCTCCCTGCCACCCCCTCTTTCTTGCG-TCTTGGA-TGAATTTGTAAAGGCCAGAGCTCATGAATAGACACAAGCACCAATCTTAGTAGAATAAAACAAAACGAA-----------------------------------ACAAAAAACCTTAGTATACATAAT--AAAAATTTAACACTAAGTTGTGTCAGCTAACACTATTTGGATTTTCTGATGTGTACAATGCAACCTAATTAACATGTCATATAGCCAGCATCATGCTTAGAGCTAGGGAAAGCAAAGATAACTAAAATACATAAACCATCTGAAATACCACAGGATAGGGAATATAACTTT-AAAAACAATA-CCTTTCCATTCC-CCACCCAAATAGTCTAATATAAACTGAAAACTGGATGAGGATGGAAGTTA-CTTTGTAGTCACGACAATATTGAGTATCCT-GAAGAATCAGTTCTCTATCA-AGTAGCGTGAGTGATAACTCATACCTCATCTCAAAGCTTAACATTTTT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21609384 1142 + 198332218 GATTGAGAAGACTTAGAGCTTCCATTTTA-GGTGGATTAAGAGATTTA---CTCCTGATGAGAGGTCAAAGGATTCCTACTGAACCAGATATCAGTTGCTGGGGAACAGTCA---TATGTGACTGCAACATCAAGGAACCCACATATGCAGCCTCGCACACATACAGGACATAAAGCCAAACTGCAAAAGATAACACATCAAAATATCT-CTATATTTTGTAATGCCAGATTTGTGTAAATCAGAAAAGAACTGCCAGGCTCACCAACAACCTC--------ATTAATATCACGATAACTATCAATATGGAAAACTGTTATTTCCTATTATATTTTTAAAAAGTCAAATTAATAAACTTTAATTATGAACAACCAGCATTT-ATTA---------------------------------------------ATTATCTCCTATAATCACTATGACAGAGACAGTTAATTCCCTGCCCAGTATATATTCTTGCTTCTACTTTAAGAACAAAACCACAATTTTATTAAGATTAGCAA-GTACCCAATTTAATGAatatatatgtgtagatctacatattatatagatacgtgtacatttgtgtatatgtacacatagctata------------tTTTTTCCTTCTCTCATGAAGCTAGGGGTGGCCAATGAGATATGAATGGAAACCACTGGCTGATGTATCTGATGACCTCTTTATAGGGGTCTAGACTTATGTGGAAGGGGGCCCATTGTCCTCCCTGCCACCCACTCTTTCTTGCT-TCTTGGA-TGAATTTGTAAAGGCCAGAACTCATGAATAGACATAAGCACCAATCTTAGTAGAATAAAACAAAATGAA-----------------------------------ACAAAAAACCTAACTATACATAAT--AAAAATTTAACGCTAAGTTGTATCAGCTAATATTATTTGGATTTTCTGATGTGTACAATGCAACCTAATTAACATGTCGTATAGCCAGCATCATGCTTAGAGCTAGGGAAAGCAAAGATAACTAAAATACATAAACGATCTGAAATACCACAGGATAGGGAATATAACTTT-AAAAACAATA-CTTTTCCATTCC-C--CCCAAATAGTCTAATATAAACTGAAAACTGGATGAGGATGGAAGTTA-CTTTGTAGTCAGGACAATATTGAGTATCCT-GAGGAATCAGTTCTCTATCA-AGTAACATGAGTGATAACTCATACCTCATCTCAAAGCTTGATATTTTT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20221281 1143 - 85365473 GAGTAAGAAGACTTAGAGCTTCCATTTTA-GGTGGATTAAGAGATTTA---CTCCTGATGAGAGGTCAAAGGATTCCTATTGAAACAGATATCAGTTGCTGGGGAACAGTCA---TATGTGATTGCAACATCAAGGAACCCACAAATGCAGCCTTGCACACATACGGGACATAAAGCCAAACTTCAAAAAATAACACATCAAAATATCT-CTACACTGTGTAATGCCAGATTTGTGTAAATCAGAAAAGAACTGCCAGGCTCACCAACAACCTC--------ATTAATATCACAATAACGATCAATACAGAAAACTGTTATTTCCTATTATATTTTTAAAAAGTCAAATTAATAAACTTCAATTATGAATAACCAGCATTT-ATTA---------------------------------------------ATTATCTCCTATAATCACTATGACAGAGATAGTTAATTCCCTGCCCAGTATATATTCTTGCTTCTACTTTAAGAACAAAACCATAATTTTATTAAGATTAGCAA-GTACCCAATTTAATGAatatatatgtgtagatctatatattatatagatatgtgtacatttgtgtatatatacacatatgtata------------tTTTTTCCTTCTTTCGTGAAGCTAGGGGTTGCCAATGAGATATGAATGGAAAGCACTGGCTGATATACCTGAGGACCACTTTTTAGGGGTCTAGACTTATGTGCAAGGGGGCCCATTGTCCTCCCTGCCTCCACCTCTTTCTTGCT-TCTTGGA-TGAATTTGTAAAGGCCAGAACTCATGAATAGACATAAGCACCAATCTTAGTAGAATAAAATAAAACGAA-----------------------------------ACAAAAAATCTTAGTTTACATAAT--AAAAATTTAACACTAAGTTGTATCAGCTAATATTATTTGGATTTTCTGATGTGTACAATGCAACCTAATTAACATGTCGTATAGCCAGCATTATGCTAAGAGCTAGGGAAAGCAAAGATAATTAAAATACATAAACGATCTGAAATACCACAGGATAGGGAATATAACTTT-AAAAACAATA-CTTTTCCATTCT-CC-CCCAAATAGTCTAATATAAACTGAAAACTGGATGAGGATGGAAGTTA-CTTTGTAGTCAGGACAATATTGAGTATCCT-GAGGAATCAGTTCTCTATCA-AGAAACCTGAGTGATAACTCATACCTCATCTCAAAGCTTGATATTTTT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16687610 1195 + 184069350 GAATAAGAAGATTTACAGCTTCCATTTTA-GGTGGATTAAGAGATTTA---CTTCTGATGAGAGGTCAAAGGTTTCCTACTGAAACAGATATCAGTTACTGGGGAGCAGTCA---TATGTGACTGCAACATCAAGGAACCCACAAATGCAGCCTCGCAAACATACAGGACATAAAGCCAAACTGCAAAAGATAACACATCAAAATATCT-CTATATTGTGTAATGCCAGATTTGTGTAAATCAGAAAAGAACTACCAGACTCACCAACAACCTC--------ATTAATATCACAATAACTATCAATACAGAAAACTGTTAATTCCTATTATA-TTTTAAAAAGTCAAATTAAGAAACTTCAATTATGAACAACGAGCATTT-ATTAATTGTCTCCTATAATCACTGCTTCAATTATGAACAACGAGCATTTATTGTCTCCTATAATCACTATGACAGAGATAGTTAATTCGCTGCCCAGTATATATTCTTGCTTCTACTTTAAGAACAAAACCACAATTTTATTAAGATTAGCAAGGTACCCAATTTAATGAATATATATGTGTAGATCTAT-TGTtatatagatatatgtacatttgtgtatatatacacatatatatacatacgtatGTGTTTTTTCCTTCTCTCATGAAGCTAGGGGTGGCTAATGAGATATGAATGGAAACCACTGGCTGAGATACCTGAGGACTTCTTTATAGGGGTCTAGACTGATGTGTAAGGAGG-CCATTATCCTCCCTGCCA-CACCTCTTTCTTGCT-TCTTGGA-TGAATTTGTAAAGGCCAGACCTCATGAATAGACATAAGCACCAATCTTAGTAGAATAAAACAAAATAAA-----------------------------------ACAAAAAACCTTAGTATACATAAT--AAAAGTTTAACACTACTTTGTATCAGCTAATATTATTTGGATTTTCTGATGTGTACAATGCAACCTAATTAATATGGCGTATAGCCAGTATTATGCTTAGAGCTAGGGAAAGCAAAGATAACTAAAATACATAAACAATCTGAAATACCACAGGATAGGGAATATAACTTT-AAAAACAATA-CTTTTCCATTCC-C--CCCAAATAGTCTAATATAAACTGAAAATTGGATGAGGATGGAAGTTA-CTTTGTAGTCAGGACAATATTGAGTATCTT-AAGAAATCAGTTCTCTGTCA-AGTAACGTGAGTGATAACTCATACCTCAACTC-AAGCTTGATATTTTT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20729567 1150 + 189454096 GAATAAGAAGATTTACAGCTTCCATTTTA-GGTGGATTAAGAGATTTA---CTTCAGATGAGAGGTCAAAGGTTTCCTATTGAAACAGATATCAGTTACTGGGGAGCAGTCA---TATGTGACTGCAACATCAAGGAACCCACAAATGCAGCCTCGCAAACATACAGGACATAAAGCCAAACTGCAAAAGATAACACATCAAAATATCT-CTATATTGTGTAATGCCAGATTTGTGTAAATCAGAAAAGAACTACCAGACTCACCAACAACCTC--------ATTAATATCACAATAACTATCAATACAGAAAACTGTTAATTCCTATTATA-TTTTAAAAAGTCAAATTAAGAAACTTCAATTATGAACAATGAGCATTT-ATTA---------------------------------------------ATTGTCTCCTATAATCACTATGACAGAGATAGTTAATTCGCTGCCCAGTATATATTCTTGCTTCTACTTTAAGAACAAAACCACAATTTTATTAAGATTAGCAAGGTACCCAATTTAATGAatatatatgtgtagatctat-tgttatatagatatatgtacatttgtgtatatatacacatatatatacataCGTATGTGTTTTTTCCTTCTCTCATGAAGCTAGGGGTGGCTAATGAGATATGAATGGAAACCACTGGCTGAGATACCTGAGGACTTCTTTATAGGGGTCTAGACTGATGTGTAAGGAGG-CCATTATCCTCCCTGCCA-CACCTCTTTCTTGCT-TCTTGGA-TGAATTTGTAAAGGCCAGACCTCATGAATAGACATAAGCACCAATCTTAGTAGAATAAAACAAAATAAA-----------------------------------ACAAAAAACCTTAGTATACATAAT--AAAAGTTTAACACTACTTTGTATCAGCTAATATTATTTGGATTTTCTGATGTGTACAATGCAACCTAATTAATATGGCGTATAGCCAGTATTATGCTTAGAGCTAGGGAAAGCAAAGATAACTAAAATACATAAACAATCTGAAATACCACAGGATAGGGAATATAACTTT-AAAAACAATA-CTTTTCCATTCC-C--CCCAAATAGTCTAATATAAACTGAAAATTGGATGAGGATGGAAGTTA-CTTTGTAGTCAGGACAATATTGAGTATCTT-AAGAAATCAGTTCTCTGTCA-AGTAACGTGAGTGATAACTCATACCTCAACTC-AAGCTTGATATTTTT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16325681 1146 + 178775436 GAGTAAGAAGATTTACAGCTTCCATTTTA-GGTGGATTAAGAGATTTA---CTTCTGATGAGAGGTCAAAGGTTTCCTATTGAAACAGATATCAGTTACTGGGGAGCAGTCA---TATGTGACTGCAACATCAAGGAACCCACAAATGCAGCCTCACAAACATACAGGACATAAAGCCAAACTGCAAAAGATAACACATCAAAATATCT-CTATATTGTGTAATGCCAGATTTGTGTAAATCAGAAAAGAACTACCAGACTCACCAACAACCTC--------ATTAATATCACAATAACTATCAATACAGAAAACTGTTAAttcctattata-ttttaaaaagtcaaattaacAAACTTCAATTATGAACAACCAGCATTT--------------------------------------------------ATTGTCTCCTATACTCACTATGACAGAGATAGTTAATTCGCTGCCCAGTATATATTCTTGCTtctactttaaaaacaaagcCACAATTTTATTAAGATTAGCAAGGTACCCaatttaatgaatatatatgtgtagatctat-tgttatatagatatatgtacatttgtgtatatatacacatatatatacatacgtatgtgttttttccttctctcatgAAGCTAGGGGTGGCTAATGAGATATGAATGGAAACCACTGGCTGAGAGACCTGAGGACTTCTTTATAGGGGTCTAGACTGATGTGTAAGGGGG-CCATTATCCTCCCTGCCA-CACCTCTTTCTTGCT-TCTTGGA-TGAATTTGTAAAGGCCAGACCTCATGAATAGACATAAGCACCAATCTtagtagaataaaacaaaataaa-----------------------------------acaaaaaaccgtagtatacataat--aaaaatttaacactAATTTGTATCAGCTAatattatttggattttctgATGTGTACAATGCAACCTAATTAATATGGCGTATAGCCAGTATTATGCTTAGAGCTAGGGAAAGCAAAGATaactaaaatacataaacaatCTGAAATACCACAGGATAGggaatataacttt-aaaaacatta-ccTTTCCATccc-c--cccAAATAGTCTAATATAAACTGAAAATTGAATGAGGATGGAAGTTA-CTTTGTAGTCAGGTCAATATTGAGTATCTT-GAGGAATCAGTTCTCTGTCA-AGTAACGTGAGTGATAATTCATACCTCAACTC-AAGCTTGATATTTTT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19812693 1151 - 48547382 GAGTAAGAAGATTTAGAGTTTCCATTTTA-GGTGGATTAAGAGATTTA---CTTCTGATGAGAGGTCAAAGGTTTCCTACTGAGACAGATATCAGTTACTGGGGAGCAGTCA---TATGTGACTGCAACATCAAGGAACCCACAAATGTAGCCTCGCAAACATACAGGACATAAAGCCAAACTGCAAAAGATAACACATCAAAATATCT-CTATATTGTGTAATACCAGATTTGTGTAAATTAGAAGAGAACTACTAGGCTCACCAACAACCTC--------ATTAATATCACAATAACTATCAACACAGAAAACTGTTATTTCCTATTATA-TTTTAAAGAGTCAAATTAACAAAATTCAATTACAAAGAACCAGCATTT-ATTA---------------------------------------------ATTGTCTCCTATAATCACTATGACAGAGATAGTTAATTCGCTGCCCAGTATATATTCTTGCTTTTACTTTAAAAACAAAGCCACAATTTTATTAAGATTAGCAAGGTACCCAATTTAAAGAatatatatgtgtagatctat-tgttgtatagatatatgtacatttgtgtatatatacacacatatatacatacatatGTGTTTTTTCCTTCTCTCATGAAGCTAGGGGTGGCTAATGAGATATGAATGGAAACCACTGGCTGAGACACCTGAGGACTTCTTTATAGGGGTCTAGACTGATGTGTAAGGGGG-CCATTATCCTCCCTGCCA-CTCCTCTTTCTTGCT-TCTTGGA-TGAATTTGTAAAGGCCAGACCTCATGAATAGACATAAGCACCAATCTTAGTAGAATAAAACAAAATAAA-----------------------------------ACAAAAAACCTTAGTATACATAAT--AAAAGTTTAACACTAATTTGTATCAGCTAATATTATTTGGATTTTCTGATGTGTACAATGCAACCTAATTAATATGGTGTATAGCCAGTATTATGCTTAGAGCTAGGGAAAGCAAAGGTAACTAAAATACATAAACAATCTGAAATACCACAGGATAGGGAATATAACTTT-AAAAACAATA-CTTTTCCATCCCTC--CCCAAATAGTCTAATATAAACTGAAAATTGAATGAGAATGGAAGTTA-CTTTGTAGTCAGGACAATATTGAGTATCTT-GAGGAATCAGTTCTCTGTCA-AGTAACGTGAGTGATAACTCATACCTCAACTC-AAGCTTGATATTTTT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21164734 1101 - 190850796 GAGTAAGAAGACTTAGAGCTTCCATTTCA-GGTGGATTAAGAGACTTA---CTCCTGATGAGAGGTTAAAGGAT--------------------GTTG------------CA---TACATGACTGCAACATCAAGGAACCCACAAATGCAGCCTTGCAGACATACAGGACATAAAGCCAAACTGCAAAAGATTACACTTCGAAATATCTCCTACATTGTATAATGCCAGATTTGTGCAAATCAATAAAGAACTGCCAGGCTCACCGATAACCTC--------ATTAATATAACAATAACTATCAATACAGAAAACCATTATTTTCTACTATA-ATTTTTAAAGTCAAATTAATAAACTTCAATTATTAACAACCAGCATTTTATTC---------------------------------------------ATTATCTCCTATAATCACTAGGACAGAAATAGTTAATTTCCCACCCAGTACATATTCTTGCTTCCACTTTAAGAACAAAACCCTAATTTTATTAAGAGTAGCAAGGTACCCAATTTAATGAatatatatgtgtatatctacatattatatag------gtacatatatatatatacacatgcatatgta------------tTTTTTCCTTCTCTTATGAAGCTAGGGGCGGCCAATGAGATTTGAATGGAAACCACTGGTTGAGATATCTGAGGACCTCTTTATAGGGGTCTAGACTTATGTGGAAGGGGGTCCATTGTCGGCCCTGCCA----CCAATTTTTGCT-TCTTGGA-TAAATTTGTTAATTGCAGACCTCATGAATAGACATAAA-ACCCATCTTAGTAGAATCAAACAAAATGAA-----------------------------------ACAAAAAACCTTAGTATACATAAT--AAAAGTTTAACACTAATTTGTATCAGATAATACTATTTGGATTTTCTGATGTGTATCACGCAACCTACTCAATATGTCATATAGCCAGCATTATGCTTAGAGCTAGGGAAAGCAAAGGTATCTAAAATACATAAACAATCTGAAGTAACACAGAATAGGGAATATAACTTT-AAAAATAATA-CTTTTCCATTCC-T--CCCAAATAGTCTAATATAAATTGAAAAATGGATGAGGAAGGAAGTTC-CTTTGTAGTCAGGACAATATTGAGTATCCTAAAGGAATGAGTGCTCTGTCA-A-TAACGTGAAAGACAATTCATACCTCATCTTAAAGCTTGATATTTTT i calJac3.chr3 C 0 I 335 s canFam3.chr3 3748473 1082 - 91889043 GGATAAGTCAAC-TAAAGCCTCCATCTGAGGGTGGATTAAGACATTTAGGTCTGCTGAAAAAAACAGAAAGG-------------CAGACATTGGCTGCTAAGGTAGAGTCAGACTTTCTGACTAGGAGATCAGAGAGCCCACAAATACATCCTCACAGACATATGGGACCTGGAGACAAATTGC-AAAGATAATGCATCAAATTATCT-CCACACTGT-TAATGTCACATTTGTGCAAGTCAATAAGGAACTGCCAGACTCACCAACCACCTCCCCGATGACTTAATACTATGATGACTGTCAGTACAGGAAGCTGGCATTCCCTATTATAACTTGTAAAAGTCATATTTACAGAATCCAATTATGGACAATAAACATTT-ATTA---------------------------------------------ATTATCTCTTATAATCACTGTGACAGAAAGAGCTAATTACCAATCCAGTATCTATTCTTGCTTCTACTTTAAGAACAGAACCCTGA-TTTATTAAGACCAGCAA-GATGCCAATTT-------------------------------------------------------------------------------------TTTTTCCATTCTCTAATGAAACTAGGAATGGCCAATGAGATCTAAAAGGAAGCCATTGAGTGGGGCATCTGGGGA-----------AACGCTAGACTTACGTGGAAAAGAAGCCTTTTTGCCCTCCCCCA-TTCCTCTTTCCTGCTAACTTAGACTCTCTCTGTAATGGCCAAAGCTCAAGAATGGAAATATACACAAACCCTTGCAGAACAAAGAGAAAGAAGGAGCTCAGGTCCTCCAAAGCAGCCGGCCTCAGCCTACTACTGACCTTAGTAC-CATGATACAAAGATAGAACCCTAATTCGTATAAACTCATGCTATTTGGAGTTTCTGATGGGTGCAAACAAACATCATTAAAACGTAGTAAAGCCAGCCATATGCTTAGAGCGAGGGGAAGCAAAGATAAGTAAAAGTTATAAATGGCATCAGAGATTATAGGAGAGAGGATACAATTCTAAAAAACAGTATTTTTTTTCTTTC-C--CCCAAGTAGTCTAACAT-AACTGAAAAATGGATGAGGAAATAAGTTATCTTTGTAGTCCCAACAACGCTAAGTGTCAT-CAGGAGTGAGCACTCGAGCACAGAAACACAGG----GTCTCACA----------AAGCCCTACATTTTT i canFam3.chr3 I 506 C 0 e mm10.chr5 49149225 565 + 151834684 I a score=315262.000000 s hg38.chr4_KI270790v1_alt 46507 99 + 220246 CTAGGTACCAGTGGGGCAGAAACACATGATTCCTAGTCCCAAACAGTTCACAACGCAGAAGGGGAGCCAGAACAG--------------TACTTGATAATAAGTAGCATATAT s panTro4.chr4 21434067 99 + 193495092 CTAGGTACCAGTGGGGCAGAAACACATGATTCCTAGTCCCAAACAGTTTACAATGCAGAAGGGGAGCCAGAACAG--------------TACTTGATAATAAATAGCATATAT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21610526 99 + 198332218 CTAGATACCTGTGGGGCAGAAACACATGATTCCTAGTCCCAAACAGTTTACAATGCAGAAGGGAAGCCAGAACAG--------------TACTTGATAATAAATAGCATATAT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20222424 99 - 85365473 CTAGGTACCAGTGGGGCAGAAACACATGATTCCTAGTCCCAAACAGTTTACAATGCAGAAGGGGAGCCAGAACAG--------------TACTTGATAATAAATAGCATATAT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16688805 94 + 184069350 CTAGGTACCAGTGGGGCAGAAATACATGATTCCTAGTCC----CAGTTTACAGTGCA-TAGGGGAGCCAGAAAAA--------------TACTTGATAATAAATAGCATACAT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20730717 95 + 189454096 CTAGGTACCAGTGGGGCAGAAATACATGATTCCTAGTCC----CAGTTTACAGTGCAGTAGGGGAGCCAGAAAAA--------------TACTTGATAATAAATAGCATACAT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16326827 99 + 178775436 CTAGGTACTAGTGGGGCAGAAATACATGATTCCTAGTCCCAAACAGTTTACAATGCAGTAGGGGAGCCAGaaaaa--------------tacttgataataaatagCATACAT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19813844 99 - 48547382 CTAGGTACCAGTGGGGCAGAAATACATGATTCCTAGTCCCAAACAGTTTACAATGCAGTAGGGGAGCCAGAAAAA--------------TACTTGATAATAAATAGCATACAT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21166170 112 - 190850796 CTAGGTACCAGTGGGGCAG-AACACACGATCCCTAGTCTCAGACAGTTTCCAATGCAGAAGAGGAGCCAGAACAGTACTTGATAATAAATACTTGATAATAAATAGCATATAT i calJac3.chr3 I 335 I 115 s canFam3.chr3 3749555 98 - 91889043 CTAGGTTCCAGTGGGGAAGAAACACAGGATCCTCACTCCCAAATAGTTTATAAACGAGAAGGGGGGACAGACTGG--------------GACTTAGCAACAAATAGCATGTA- i canFam3.chr3 C 0 C 0 e mm10.chr5 49149225 565 + 151834684 I a score=902681.000000 s hg38.chr4_KI270790v1_alt 46606 343 + 220246 TTATGGCCATAGTCAGCGCTGCTATGTAGTTTTTAATTCAACAAATATTC-CCCATGATAACTTGCCCTGAGGGAGAGAGTCATGAGTGTGCAACAATATTGCCCTGTTTTCAAAACTAGGTTTTGAGGGGGAGGATAAATAGAATTCAAATCGTATTATAATATGGTAGACTTGTGTGAACTTA----------------------ATAAGTGACAATCCTGGTGGA-------------ccccaaattcatgtgttgagtttctaatccctac-cacctcagaatgtcaccttatttgaaaataagatcattgcaaaagcaatttctagttatgatgaggt---------catagtggagta---aagtgggcccctaaaccaatatgac s panTro4.chr4 21434166 343 + 193495092 TTATGGCCATAGTCAGTGCTGCTATGTAGTTTTTAATTCAACAAATATTC-CCCATGATAACTTGCCCTGAGGGAGAGAGTCATGAGTGTGCAACAATATTGCCCTCTTTTCAAAACTAGGTTTTGAGGGGGAGGATAAATAGAATTCAAATCGTATTATAATATGGTAGACTTGTGTGAACTTA----------------------ATAAGTGACAATCCTGGTGGA-------------ccccaaattcatgtgttgagtttctaacccctac-cacctcagaatgtcaccttatttgaaaataagatcattgcaaaagcaatttctagttatgatgaggt---------cacagtggagta---aagtgggcccctaaactaatacgac i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21610625 341 + 198332218 TTGTAGCCACAGTCAGTGCTGCTATGCAGTTTTTAATTCAACAAATATTC-CCCATGATAACTTGCCCTGAGG--GAGAGTCATGAGTGTGCAACAATATTGCCTTCTTTTCAAAACTAGGTTTTGAGGGGGAGGATAAATAGAATACAAATCGTATTATAATATGGTAGACTTGTGTGAACTTA----------------------ATAAGTGACAATCCTGGTGGA-------------ccccaaattcatgtgttgagtttctaacccctac-cacctcagaatgtcaccttatttgaaaataaggtcattgcaaaagcaatttccagttaagatgaggt---------catagtggagta---aagtgggcccctaaaccaatatgac i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20222523 343 - 85365473 TTATAGTCTTACTCAGCACTGCTATGCAGTTTTTAATTCAACAAATATTC-CCCATGATAACTTGCCCTGAGGGAGAGAGTCATGAGTGTGCAACAATATTGCCCTCTTTTCAAAACTAGGTTTTGAGGGGGAGGATAAATAGAATTCAAATCGTATTATAATATGGTAGACTTGTGTGAACTTA----------------------ATAAGTGACAATCCTGGTGGA-------------ccccaaattcatgtgttgagtttctaacccctac-cacctcagaatgtcaccttatttgaaaataaggtcattgcaaaagcaatttctagttaagatgaggt---------catagtggagta---aagtgggcccctaaaccaatatgac i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16688899 343 + 184069350 TTATAGCCATAGTCAGTGCTGCTATGCAGTTTTTAATTCAACAAATATTC-CCCATGATAACTTGCCCTGAGGGAGAGAGTCATGAGTGTGCAACAATATTGCCCTCTTTTCAAAACTAGGTTTTGAGGGGGAGGAGAAATAGAATTCAAATTGTATTATAATATGATAGACTTGTGTGAACTTA----------------------ATAAGGGACAATCTTGGTGGA-------------ctccaaattcatgtgttgagtttccaacccctac-cacctcagaatgtcaccttgtttgaaaataaggtcattgcaaatgcaatttctagttaagatgaggt---------catagtggagca---aagtgggcccgtaaaccaatctgac i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20730812 343 + 189454096 TTATAGCCATAGTCAGTGCTGCTATGCAGTTTTTAATTCAACAAATATTC-CCCATGATAACTTGCCCTGAGGGAGAGAGTCATGAGTGTGCAACAATATTGCCCTCTTTTCAAAACTAGGTTTTGAGGGGGAGGAGAAATAGAATTCAAATTGTATTATAATATGATAGACTTGTGTGAACTTA----------------------ATAAGGGACAATCTTGGTGGA-------------ctccaaattcatgtgttgagtttctaacccctac-cacctcagaatgtcaccttatttgaaaataaggtcattgcaaatgcaatttctagttaagatgaggt---------catagtggagca---aagtgggcccgtaaaccaatctgac i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16326926 343 + 178775436 TTATAGCCACAGTCAGTGCTGCTATGCAgtttttaattcaacaaatattc-ccCATGATAACTTGCCCTGAGGGAGAGAGTCATGAGTGTGCAACAATATTGCCCTCTTTTCGAAACTAGGTTTTGAGGGGGAGAAGAAATAGAATTCAAATTGTATTATAATATGATAGACTTGTGTGAACTTA----------------------ATAAGGGACAATCTTGGTGGA-------------CCCCAAATTCATGTGTGGAGTTTCTAACCCCTAC-CACCTCAGAATGtcaccttatttgaaaataaggcCATTGCAAATGCAATTtctagttaagatgaggt---------catagtgGAGTA---AAGTGGGCCCCTAaaccaatatgac i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19813943 343 - 48547382 TTATAGCCATAGTCAGTGCTGCTATGCAGTTTTTAATTCAACAAATATTC-CCCATGATAACTTGCCCTGAGGGAGAGAGTCATGAGTGTGCAACAATATTGCCCTCTTTTCAAAACTAGGTTTTGAGGGGGAGGAGAAATAGAATTCAAATTGTATTATAATATGATAGACTTGTGTGAACTTA----------------------ATAAGGGACAATCTTGGTGGA-------------ccccaaattcatgtgtggagtttctaacccctac-cacctcagaatgtcaccttatttgaaaataaggtcattgcaaatgcaatttccagttaagatgaggt---------catagtggagta---aagtgggcccctaaaccaatatgat i chlSab2.chr27 C 0 C 0 s canFam3.chr3 3749653 375 - 91889043 TTACAGCCCTCACACGTGCCACCATGCAGCTTTCCAGTCAACAAATCTTCTCCCTTGATGAGGTGCCCTGAGG-ACAGAGATACCAGTGAGAAATGATAGTACAATACCTGCAAACCTAGGTTCCGAGGGAGA----AGATCTAATACAA---GTGTTGGGATAGAGCCGCCTCACGTGAATTTAAGAGCCACCATTTCAACTTTTCACAAGTGAC-TTCATGGtgggtggagatgtttcccctaaaactcatatgttgacttcctaggccctccgcagctcagagcatgaccttactgaaaagcagggtcattgcagagatgatg---agttaggctgacgtgcatgtagctctacgggagcaggtatgtgg-----taacccaataggac i canFam3.chr3 C 0 C 0 e mm10.chr5 49149225 565 + 151834684 I e calJac3.chr3 21166282 115 - 190850796 I a score=216642.000000 s hg38.chr4_KI270790v1_alt 46949 72 + 220246 tgatgtccttatgaaaaggagatatttggacatag---acat---atacacagggacaaggctgtgtgaacctgatgg s panTro4.chr4 21434509 72 + 193495092 tgatgtccttatgaaaaggagatatttggacataa---acat---atacacagggacaaggctgtgtgaacctgatgg i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21610966 74 + 198332218 tgatgtccttatgaaaaggagatatttggacacag---acat-acacacacagggacaaggctgtgtgaacctgatgg i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20222866 72 - 85365473 cgatgtccttatgaaaaggagatatttggacatag---acat---atacacagcgacaaggctgtgtgaacctgatgg i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16689242 72 + 184069350 tgatgtccttatgaaaaggaaatatttggacatag---acat---atacatagggacaaggctgtgtgaacctgatgg i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20731155 72 + 189454096 tgatgtccttatgaaaaggaaatatttggacatag---acat---atacatagggacaaggctgtgtgaacctgatgg i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16327269 72 + 178775436 tgatgtctttaggaaaaggaaatatttggaCATAG---ACAT---ATACATAGGGACAAGGCTGTGTGAACCTGATGG i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19814286 68 - 48547382 tgatgtctttatgaaaaggaaatatttggacat-------at---atacatagggacaaggctgtgtgaacctgatgg i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21166397 72 - 190850796 tgacatctttatgaaaaggaggtacttggacacag---acat---atacacagggacaaggctgtgtgatcctgaggg i calJac3.chr3 I 115 C 0 s canFam3.chr3 3750028 69 - 91889043 tggcgccctcagggaaggga---------acatggggtacattgcacacacagggagaccatcatggggacacgaagg i canFam3.chr3 C 0 I 27 e mm10.chr5 49149225 565 + 151834684 I a score=1656356.000000 s hg38.chr4_KI270790v1_alt 47021 562 + 220246 ttgatattgagtgtcaacttgattgaattgaaggatgcacagtattgttcctgtgtgtatctgtaagggtgttgccagaggagattcacatttgagtcagtgggctgggagatgcagacccaccctcaatctgggtgggcaccatctaatcagctgccagcataaaagcaggcatggaaagagcagacttgctgagtcttccagccaccatctttctcctgtgctggatgcttcctaagttcaaacatcagactctaagttcttcagctgttggactcttggacttaccccagtgctttg---------------------------cc-aggggctctctgtggcctttggccacagactgaagactgcactatgggcttcccaacttttgagttgttgggattcggactggcttcctggctcctcagcttgcagacagccttttgtggcacttcaccttgtgactgtgtgagtcaatt---ctaataaaatcctcttcatatattcatctatcctgttagttgtgtccctttagagaacactgactaatacagtgaagatgaaggaaaaactctgggtaatgcttcttctt s panTro4.chr4 21434581 561 + 193495092 ttgatat----tgtcaacttgattgaattgaaggatgcacagtattgttcctgtatgtatctgtaagggtgctgccagaggagattcacatttgagtcagtgggctgggagatgcagacccaccctcaatctgggtgggcaccatctaatcagctgccagcataaaagcaggcatggaaagagcagacttgctgagtcttccagccaccatctttctcctgtgctggtggcttcctaacttcaaacatcagactctaagttcttcagctgttggactcttggacttaccccagtgctttg---------------------------cc-aggggctctctgtggcctttggccacagactgaacactgcactatcgacttcccaacttttgagttgttgggattcggactggcttcctggctcctcagcttgcagacagccttttgtgggacttcaccttgtgactgtgtgagtcaattctcctaataaaatcctcttcatatattcatctatcctgttagttgtgtccctttagagaacactgactaatacagtgaagatgaaggaaaaactctgggtaatgcttcttctt i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21611040 592 + 198332218 ttgatattgagtgtcaacttgattggattgaaggatgcaaagtattgttcctgcgtgtatctgtaagggtgttgccagaggagattcacatttgagtcagtgggctgggagatgcagacccaccctcaatctgggtgggcaccatctaatcagctgccagcataaaagcaggcatggaaagagcagacttgctgagtcttccagccaccatctttctcctgtgctggatgctccctgacttcaaacatcagactctaagttcttcagctgttggactcttggacttaccccactgctttgccaggggtaaagtgctttgccagagatcc-aggggctctctgtggcctttggccacagactgaaggctgcactatcggcttcccaacttttgagttgttgggattcggactggcttcctggctcctcagcttgcagacagccttttgtgggtcttcaccttgtgactgtgtgagtcaattttcctaataaaatcctcttcatatattcatctatcctgttagttgtgtccttttagagaacactgactaatacagtgaagatgaaggaaaaactctgggtaatgcttcttctt i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20222938 561 - 85365473 ttgatattgagtgtcaacttgattggattgaaggatgcaaagtattgttcctgtgtgtgtctgtaagggtgttgccagaggagattcacatttgagtcagtgggctgggagatgcagacccaccctcaatctgggtgggcaccatctaatcagctgccagcataaaagcaggcatggaaagaacagacttgctgagtcttccagccaccatctttctcctgtgctggatgcttcctgccttcaaacatcagactttaagctcttcagctgttgaactcttggacttaccccagtgctttg---------------------------cc-aggggctctctgtggcctttggccacaggctgaaagctgcactatcggcttcccaacttttgaggtgttgggattcggactggcttcctgtctcctcagcttgcagacagccttttgtgggatttcaccttgtgactgtgtgagtcaattctgctaataaaatcctcttcctatgttcctctatcct----gtcgtgtccctttagaaaacactgactaatataatgaagatgaaggaaaaactcggggtaatgcttcttctt i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16689314 563 + 184069350 ttgataccgagtgtcaacttgattggattgaaggatgcaaagtattgttcctgtgtgtgtctgtaagggtgttgccagaggagattcacatttgagtcagtgggctgggagatgcagactcaccctcagtccgggtgggcaccatctaatcagctgccagcataaaagcaggcatggaaagagtagacttgctgagtcttccggccaccatctctctccagtgctggaggcttcctgccttcaaacatcagactctatgttcttcagctgttggactcttggacttaccccggggctttg---------------------------cc-agggactctc--gggcctttggccacagactgaaggcttcattatcagcttccctacttttgaggtgttgggattcggactggcttcctggctcctcagcttgcagacggccttttgtgggacttcaccttgtgactgtgtgagtcaattctcctaataaaatcctcttcatatattcatctatcctattagttgtgtccctttagagaacgctgactaatacagcgaagatgaagcaaaaactctgggtaatgcttcttctt i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20731227 563 + 189454096 atgataccgagtgtcaacttgattggattgaaggatgcaaagtattgttcctgtgtgtgtctgtaagggtgttgccagaggagattcacatttgagtcagtgggctgggagatgcagactcaccctcagtccgggtgggcaccatctaatcagctgccagcataaaagcaggcatggaaagagtagacttgctgagtcttccggccaccatctctctccagtgctggaggcttcctgccttcaaacatcagactctatgttcttcagctgttggactcttggacttaccccagggctttg---------------------------cc-agggactctc--gggcctttggccacagactgaaggcttcattatcagcttccctacttttgaggtgttgggattcggactggcttcctggctcctcagcttgcagacggccttttgtgggacttcaccttgtgactgtgtgagtcaattctcctaataaaatcctcttcatatattcatctatcctattagttgtgtccctttagagaacgctgactaatacagcgaagatgaagcaaaaactctgggtaatgcttcttctt i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16327341 557 + 178775436 TTGATACCGAGTGTccatttgattggattgaaggatgcaaagtattgttcttgtgtgtgtctgtaagggtgttgccagaagagattcacatttgagtcagtgggctgggagatGCAGActcaccctcagtctgggtgggcaccatctaatcagctgccagcataaAAGCAGGCATGGAAAGagtagacttgctgagtcttctggccacCATCTCTCTCCAGTGCTGGAGGCTTCCTGCCTTCAAACATCAGACTCTACATTCTTCAGCtgttggactcttggacttactcCAGGGCTTTG---------------------------CC-AGGGACtctc--gggcctttggccacagactgaaggctgcattatcggcttccctacttttgaggtgtTGGGATtcggactggcttcctggctcctcagcttgcagacagccttttgtgggacttcacctggtgactgtgtgagtcaattctcctaataaaacCCTCTTCAT------ACCGATCCTATTAGTTGTGTCCCTTTAGAGAACGCTGACTAATACAGTGAAGATGAAGCAAAAACTCTGGGTAATGCTTCTTCTT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19814354 562 - 48547382 ttgataccgagtgtccacttgattggattgaaggatg-aaagtattgttcctgtgtgtgtctgtaagggtgttgccagaggagattcacatttgagtcagtgggctgggagatgcagactcaccctcagtctggatgggcaccatctaatcagctgccagcataaaagcaggcatggaaagagtagacttgctgagtcttccggccaccatctctctccagtgctggaggcttcctgccttcaaacatcagactctatgttcttcagctgttggactcttggacttaccccagggctttg---------------------------cc-agggactctc--gggcctttggtcacagactgaaggcttcattatcggcttccctacttctgaggtgttgggattcggactggcttcccggctcctcagcttgcagacagccttttgtgggacttcaccttgtgactgtgtgagtcaattctcctaataaaaccctcttcatatattcatctatcctattagttgtgtccctttagagaacactgactaatacagcgaagatgaagcaaaaactctaggtaatgcttcttctt i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21166469 546 - 190850796 ttgatagtgagtgtcgacttgattggatagaagaatgcaaagtattg------------------agggtgttaccagtggagattcacatttgagtcagtggactgggagatgcagacccactctcaatctgagtgggcaccatctaatcagctgccaggatgaaagcaggcatgggaaaaacagacttgctgagtcttccggccaccatctttctcccatgctggatgcttcttgccctcaaacatcagacttcaagttattcagctgttggacttttggacttgtcccagtgctttg---------------------------ctggggggctctt--gggcctttggtcacagactgaaggctgcattatccacttccctacttttgaagtgttgggatttggactggctccctggctcctcagcttgcaggtggcctcttgtgggacttcaccttgtgactgtgtgagtcaattctcctaataaactcctcttcaaatattcatctatcctgctagttctgtccctttagagaactctgactaatacagtgaagatgaagaaaaagctctgggtgatgcttattctt i calJac3.chr3 C 0 C 0 e mm10.chr5 49149225 565 + 151834684 I e canFam3.chr3 3750097 27 - 91889043 I a score=801844.000000 s hg38.chr4_KI270790v1_alt 47583 285 + 220246 catggcaaggaatgtcaaaaatggtcaataaaccaccagatactagggaagaggcatgggtaagat-cactctcaccgcattcagagcgaatcaaccctgctgatgccttg---atctcagattttgagcctccaaacctgtgagacaatatattcctattgtttaagccacccactcaattagcaatactttgttcaggctgctctaacaaactaagacaAGCTTTAATGGAGTCT------ACAAGTTT-GTTGAGACATGTTTAAGTCCCATGCACTAGGACACTGATATTCT s panTro4.chr4 21435142 285 + 193495092 catggcaaggaatgtcaaaaatgatcaataaaccaccagatactagggaagaggcatgggtaagat-cactctcaccgcattcagagtgaatcaaccctgctgatgccttg---atctcagattttgagcctccaaacctgtgagacaatatattcctattgtttaagccacccactcaattagcaatactttgttcaggctgctctaacaaactaagacaAGCTTTAATGGAGTCT------ATAAGTTT-GTTGAGACATTTTTAAGTCCCATGCACTAAGACACTGATATTCT i panTro4.chr4 C 0 I 691 s ponAbe2.chr4 21611632 286 + 198332218 catggtaaggaatgtcaaaaatggtcaataaaccaccagacactagggaagaggcatgggtaagatccactctcaccgcattcagagcgaatcaaccctgctaatgccttg---atctcagactttgagcctccaaacctgtgagacaatatattcctattgtttaagccacccacacagttggcgatactttgttttggccgttctaacaaactaagacaAGCTTTAATGGAGTCT------ATAAGTTT-GTCAAGACATTTTTAAGTCCCATGCACTAGGACACTGATATTCT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20223499 286 - 85365473 catggcaaggaatgtcaaaaatggtcaataaaccaccagatactagggaaggggcatgggtaagatccactatcaccgcattcagagcaaatcaacccggctgatgccttg---atctcagacttcgagcctccaaacctgtgagacaatatattcctattgtttaagccacccacccagttggcgatactttggtttggctgctctaacaaactaagacaAGCTTTAATGGAGTCT------ATAAGTTT-GTTGAGACATTTTTAAGTCCCATGCACTAGGACACAGATATTCT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16689877 285 + 184069350 catgacaaggaatggcaaaaatggtcaataaaccaccagttactagggaagaagcatggggaagatccactctcaccacattcagagagaatcaaccctgctgacgccttg---atctcggactttgaaccttcaaacctgtgagacaatatattcctattgtttaagccacccacacagttggtgatactttgctttggcagctctta-aaactaagacaAGCTTTAATGGAGTCT------GTAAGTTT-GCCGAGACATTTTTAAGTCCCATGCACTAGGAGACTGCTATTCT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20731790 285 + 189454096 catgacaaggaatgtcaaaaatggtcaataaaccaccagttactagggaagaagcatggggaagatccactctcaccacattcagagagaatcaaccctgctgacgccttg---atctcggactttgaaccttcaaacctgtgagacaatatattcctattgtttaagccacccacacagttggtgatactttgctttggcagctctta-aaactaagacaAGCTTTAATGGAGTCT------GTAAGTTT-GCCGAGACATTTTTAAGTCCCATGCACTAGGAGACTGCTATTCT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16327898 285 + 178775436 CATGACAAGGAATGTCAAAAATGGTCAATAAACCACCAGTTACTAGGGAAGAAGTATGGGGAAGATCGACTCTCACCACATTCAGAGAGAATCAACCCTGCTGacgccttg---atctcagactttgAACCTCCAAACCTGTGAGACAATATATtcctattgtttaagccacccacaTAGTTGGTGATACTTTGCTTTGGCAGCTCTTA-AAACTAAGAGAAGCTTTAATGGAGTCT------GTAAGTTT-GCTGAGACATTTTTAAGTCCCATGCACTAGGAGACTGGTATTCT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19814916 285 - 48547382 catgacaaggaatgtcaaaaatggtcaataaaccaccagttactagggaagaagcatggggaagatccactctcaccacattcagagagaatcaaccctgctgacgccttg---atctcggactttgaaccttcaaacctgtgagacaatatattcctattgtttaagccacccacacagttggtgatactttgctttggcaactctta-aaactaagacaAGCTTTAATGGAGTCT------GTAAGTTT-GCCGAGACATTTTTAAGTCCCATGCACTAGGAGACTGGTATTCT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21167015 236 - 190850796 catgccaagaaatgtcaaaaatggtcaataagccaccagataccagggaagatggacagggaagatccactct-----------------------------------------------------gagcccccaaacctgtgagataatacattcctattgtttaagccacccacctagtttgtggtactttgttttggcagctctagcaaactaaGGCAAACTTTAATGGAGTCT------ATAAGTTT-GCTGAGACATTTTTAAATCTCATGACCTAGAAGACTGGTATCCT i calJac3.chr3 C 0 C 0 s canFam3.chr3 3750124 248 - 91889043 caagctaagatacgtcacagatggcaagccaaccac---------------------ggagctgattc-ttcccacagccctcgctaagaccaaa--ctgccgacgccttgataatctcagacttccaaccccccaaactgtgagatactacatttctgttgcttaagacacgcat----tttgtgggattctgttatgggggc------agaggaatggaAGCTTCCGTGGAATCCAGGCCAACATGTTTCGCAGCGACGTGCTT---TCCC-----------CGCTGACGTTCT i canFam3.chr3 I 27 C 0 e mm10.chr5 49149225 565 + 151834684 I a score=279490.000000 s hg38.chr4_KI270790v1_alt 47868 116 + 220246 aaaaaaaaaaaaaaaaaaaaaaaaaaGC-TTGATTGACAAGTAAACCCAGATTTTGTTGAATATTTCAACATAATAACACTTGAAAGAAAATAATAGAAAAACTTTGCTTCTTGAGG s panTro4.chr4 21436118 116 + 193495092 aaaaaaaaaaaaaaaaaaaaaaaaaaaC-TTGATTGACAAGTAAACCCAGATTTTGTTGAATATTTCAACATAATAACATTTGAAAGAAAATAATAGAAAAGCTTTGCTTCTTGAGG i panTro4.chr4 I 691 C 0 s ponAbe2.chr4 21611918 97 + 198332218 -------------------AAAAAAAAC-TTGATTAACAAGTAAGCCCAGATTTTGTTGAATATTTCAACATAATAACACTTGAAAGAACACAAGAGAAAAACTTTGCTTCTTGAGG i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20223785 100 - 85365473 ----------------AAAAAAAAAAAC-TTGATTAACAAGTAAGCCCAGATTTTATTGAATATTTCAACATAATTACACTTGAAAGAAAATAAGAGAAAATCTTTGCTTCTTGAGG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16690162 98 + 184069350 ------------------AAAAACAAAC-TTGATTAACAAGTAAGTCCAGATTTTGTTGAATATTTCAACATAATGACACTTGAAAGAAAACAAGAGAAAAACTTTGCTTCTTGAAG i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20732075 98 + 189454096 ------------------AAAAACAAAC-TTGATTAACAAGTAAGTCCAGATTTTGTTGAATATTTCAACATAATGACACTTGAAAGAAAACAAGAGAAAAACTTTGCTTCTTGAAG i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16328183 91 + 178775436 ------------------AAAAACAAAC-TTGATTAACAAGTA-------ATTTTGTTGAATGTTTCAACATAATGACActtgaaagaaaacaagagaaaaactttGCTTCTTGAAG i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19815201 98 - 48547382 ------------------AAAAACAAAC-TTGATTAACAAGTAAGTCCAGATTTTGTTGAATATTTCAACATAATGACACTTGAAAGAAAACAAGAGAAAAACTTTGCTTCTTGAAG i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21167251 95 - 190850796 ---------------------AAGAAAC-GTGATGAACAAGTAAGCCCAACTTTTGTTGAATATTTAAACATAATGACACTTGAAAGAAAACAAGAGAAAAACTTTGTTTCTTGAGG i calJac3.chr3 C 0 C 0 s canFam3.chr3 3750372 89 - 91889043 -----------------------CAACCATTTGCTAGTGAGTAAGCTCAGGTGTTTC----TATCTCAACACAATGACACTTGAGAGGGAA-AGACGGGGGACTTTGCGGTTTGAAA i canFam3.chr3 C 0 I 210 e mm10.chr5 49149225 565 + 151834684 I a score=1995750.000000 s hg38.chr4_KI270790v1_alt 47984 664 + 220246 AGGAAACAGCCCTGTTCTAAAACTGCTTACCATGAGTGCTAGTGAAAGAATTATAAAGAAAGTACAGAACTTTAGTAATTTGATAGTAGAATATTATGAATTTGAGGATTCATGACATTCTTGGGATACATTTTAGAAAAACTGAGAAAGG---------------------GCTTCCTCACATAGCAAAGGAGGTAAAATTCAA-AAATGATATAAAAATAAGCACTATGAGAGGATAAAAGAG-AAAAA---GAATACATTGTGGGATCAG-AAAAGGAGGTGGCATTTGAGAAGAAACTTGAAGGATGTTCTATTAATCAGAGT-------------------------CTggtgttttagac--aaagtctatttaatactgaccattggttact----------------------------------------------------------cgggtgatta------------------------------------------------------------------------------aa-gactgaag---------------------------------------------------cttctgggg----------------------------------------atgttgatgtaa--cccagagctcaacagctttaggaagttgctaccattcttcaggccagcagg-ggagaaaaaaag--aaagAATGAACGAATCTGAAAGG---AGAAGCTCCCTGCAGTTGGTAGTTGGACCTCTTAGGGA--AAAAAAGCCATTGTTTCACACATACTAGACCACTGAGGGGGCCTGGCTGTTTTTTT-----ACACATCTCAGAGGGGCTCTGCTGTGTGTTGGGAGAATGGGGGTG-GGCTATGTGGTACTCCCCCCA-CTCAGGTAAAGTGACATCAGGGCTAGAAGTGT s panTro4.chr4 21436234 664 + 193495092 AGGAAAGAGCCCTGTTCTAAAACTGCTTACCATGAGTGCTAGTGAAAGAATTATAAAGAAAGTACAGAACTTTAGTAATTTGATAGTAGAATATTATGAATTTGAGGATTCATGACATTCTTGGGATACATTTTAGAAAAACTGAGAAAGG---------------------GCTTCCTCACATAGCAAAGGAGGTAAAATTCAA-AAATGATATAAAAATAAGCACTATGAGAGGATAAAAGAG-AAAAA---GAATACATTGTGGGATCAG-AAAAGGAGGTGTCATTTGAGAAGAAACTTGAAGGATGTTCTATTAATCAGAGT-------------------------CTggtgttttagac--aaagtctatttaatactgaccattggttact----------------------------------------------------------cgggtgatta------------------------------------------------------------------------------aa-gactgaag---------------------------------------------------cttctgggg----------------------------------------atgttgatgtaa--cccagagctcaacagctttaggaagttgctaccattcttcaggccagcagg-ggagaaaaaaag--aaagAATGAACGAATCTGAAAGG---AGAAGCTCCCTGCAGTTGGTAGTTGGACCTCTTAGGGA--AAAAAAGCCATTGTTTCACACATACTAGACCACTGAGGGGGCCTGGCTGTTTTTTT-----AGACATCTCAGAGGGGCTCTGCTGTGTGTTGGGAGAATGGGGGTG-GGCTATGTGGTACTCCTCCCA-CTCAGGTAAAGTGACATCAGGGCTAGAAGTGT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21612015 668 + 198332218 AGGAAACAGCCCTGTTCTAAAACTGCTTACCATGAGTGCTAGTGAAAGAATTACAAAGAAAGTACAGAAGTTTGGTAATTTGATAGTAGAATATTATGAATTTGAGGATTCATGACATTCTTGGGATACATTTTAGAAAAACTGAGAAAGG---------------------GCTTCTTCACATAGCAAAGGAGGTAAAATTCAA-AAATGATATAAAAATAAGCACTATGAGAGGATAAAAGAGAAAAAA---GAATACATTGTGGGATCAG-AAAAGGAGGTGGCATTTGAGAAGAAACTTGAAGGACGTTCTATTAATCAGAGT-------------------------CTGGAGtttcagac--aaagtccatttaatactgagcattggttact----------------------------------------------------------tgggtgatta------------------------------------------------------------------------------aa-gactgaag---------------------------------------------------cttctgggg----------------------------------------atgttgatgtaa--cccagagctcaacagctttaggaagttgctaccattcttcaggccagcagg-ggagaaaaaaag--aaagAATGAACAAATCTGGAAGGAGAAGAAGCTCCCTGCAGTTGGTACTTGGACCTTTTAGGGA--AAAAAAGCCATTGTTTCACACATATTAGACCACTGAGGGGTCCTGGTTGTTTTTTC-----AGACATCTCAGAGGGGCTCTGCTGTGTGTTGGGAGAATGGGGGTG-GGCTACGTAGTACTCCTCCCA-CTCAGGTGAAGTGACATCAGGGCTAGAAGTGT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20223885 671 - 85365473 AGGAAACAGCCCTGTTCTAAAACTGCTTACCATGAGTGCTAGTGAAAGAATTATAAAGAAAGTACAGAAGTTTAGTAATTTGATAGTAGAATATTGTGAATTTGAGGATTCATGA-ATTCTTGGGATACATTTTAGAAAAACTGAGAAAGG---------------------GCTTCTTCACATAGCCAAGGAGGTAAAATTCAA-AAATGATATAAAAATAAGCACTATGAGAGGATAAAAGAG-AAAAG---GAATACATTCTGGGATCAG-AAAAGGAGGTGGCATTTGAGAAGAAACTTAAAGGATGTTCTGTTAATCAGAGT-------------------------CTggtgtttcagac--aaagtccatttaatactgagcgttggctact----------------------------------------------------------cgggtgatta------------------------------------------------------------------------------aa-gactgaag---------------------------------------------------cttctgggg----------------------------------------atgttgatgcaa--cccagagctcaacagctttaggaagttgctaccattcttcaggccagcagg-ggagaaaaaaag--aaagAATGAATGAATCTGAAAGGAGAAGAAGCTCCCTGCAGTTGGTACTTGGACCTCTTAGGGA--AAAAAAGTTATTGTTTCCCACATACTGGACCACCGAGAGGGCCTGGTTTTTTTTTTTTTTCAGACATCTCAGAGGGGCTCTGCTGTGTGTTGGGAGAATGGGGGTG-GGCTATGTGGTACTCCTCCCA-CTCAGGTGAAGTGACATCAGGGCTAGAAGTAT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16690260 665 + 184069350 AGGAAACAGCCCTGTTCAAAAACTGCTTACCATGAGTGCTAGTGAAATAATTATAAAGAAAGTACAGAAATTTAGTAATTTGATAGTAGAATATTGGGAATTTGAGGATTCATGACATTCTTGGGATATATTTTAGAAAAACTGAGAAAGG---------------------GCTTCTGCACATAGCAAATGAGGTAAAATTCAA-AAATTATATAAAAATAAGCACTATGAGAGGATAAAAGAT-AAAAA---GAATACCTAGTGGGATCAGAAAAAGGAGGTGGCATTTGAGAAGAAACTTGAAGGATGTTCTATTAGCCAGAGT-------------------------CTggtgtttcagac--aaagtccatttaatactgagcattggttact----------------------------------------------------------cgagtgatta------------------------------------------------------------------------------aa-ggctgaag---------------------------------------------------cttctaagg----------------------------------------atgttgatgtaa--cccagaactcaacagctttaggaggttgctgccattcttcaggctagccag-ggagaaaAAAGG-------ATGAAAGAATCTGAAAGGAGATGAAGCTCCCCGCAGTTGGTACTTGGACCTCTTAGGGAATAAAAAAGCCATTGTTTCACACATACTAGACCACTGAGGGGTTCTGGCTGTTTTTTC-----AGACATCTCAGAGGGGCTCTGTTGTGTGTTGGGAGAATGGGGGTG-GGCTATGTGGTACTCTTCCCA-CTCAGGTGAAGTGACATCAGGGCTAGAAGTGT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20732173 665 + 189454096 AGGAAACAGCCCTGTTCAAAAACTGCTTACCATGAGTGCTAGTGAAATAATTATAAAGAAAGTACAGAAATTTAGTAATTTGATAGTAGAATATTGTGAATTTGAGGATTCATGACATTCTTGGGATATATTTTAGAAAAACTGAGAAAGG---------------------GCTTCTGCACATAGCAAACGAGGTAAAATTCAA-AAATTATATAAAAATAAGCACTATGAGAGGATAAAAGAT-AAAAA---GAATACCTAGTGGGATCAGAAAAAGGAGGTGGCATTTGAGAAGAAACTTGAAGGACGTTCTATTAACCAGAGT-------------------------CTggtgtttcagac--aaagtccatttaatactgagcattggttact----------------------------------------------------------cgagtgatta------------------------------------------------------------------------------aa-gactgaag---------------------------------------------------cttctaagg----------------------------------------atgttgatgtaa--cccagaactcaacagctttaggaggttgctgccattcttcaggctagccag-ggagaaaAAAGG-------ATGAAAGAATCTGAAAGGAGATGAAGCTCCCCGCAGTTGGTACTTGGACCTCTTAGGGAATAAAAAAGCCATTGTTTCACACATACTAGACCACTGAGGGGTTCTGGCTGTTTTTTC-----AGACATCTCAGAGGGGCTCTGTTGTGTGTTGGGAGAATGGGGGTG-GGCTATGTGGTACTCTTCCCA-CTCAGGTGAAGTGACATCAGGGCTAGAAGTGT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16328274 669 + 178775436 AGGAAATAGCCCTGTTCAAAAACTGCTTACCATGAGTGCtagtgaaataattataaagaaagtACAGAAGTTTAGTAATTTGATAGTAGAATATTGTGAATTTGAGGATTCATGACATTCTTgggatatattttagaaaaactgagaaagg---------------------gcTTCTGCACATAGCaaaagaggtaaaattcaa-aaattatataaaaataagcactatgagaggataaaagat-aaaaa---gaataccTGGTGAGATCAGAAaaaggaggtggcatttgagaaGAAACTTGAAGGATGTTCTATTAATCAGAGT-------------------------CTGGTGTTTCAGAC--AAAGTCCATTTAATACTGAGCATTGGTTACT----------------------------------------------------------CGAGTGATTA------------------------------------------------------------------------------AA-GACTGAAG---------------------------------------------------CTTCTAAGA----------------------------------------ATGTTGATGTAA--CCCAGAACTCAACAGCTTTAGGAGGTTGCTGCCATTCTTCAGGCTAGccag-ggagaaaaaagg---aagaatgaaagaatCTGAAAGGAGATGAAGCTCCCCGCAGTTGGTACTTGGACCTCTTAGGGAATAAAAAAGCCATTGTTTCACACATACTAGACCACTGAGGGGTTCTGGCTGTTTTTTC-----AGACATCTCAGAGGGGCTCTGTTGTGTGTTGGGAGAATGGGGGTG-GGCTATGTGGTACTCTTCCCA-CTCAGGTGAAGTGACATCAGGGCTAGAAGTGT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19815299 669 - 48547382 AGGAAACAGCCCTGTTCAAAAACTGCTTACCATGAGTGCTAGTGAAATAATTATAAAGAAAGTACAGAAGTTTAGTAATTTGATAGTAGAATATTGTGAATTTGAGGATTCATGACATTCTTGGGATATATTTTAGAAAAACTGAGAAAGG---------------------GCTTCTGCACATAGCAAAGGAGGTAAAATTCAA-AAATTATATAAAAATAAGCACTATGAGAGGATAAAAGAT-AAAAA---GAATACCTGGTGGGATCAGAAAAAGGAGGTGGCATTTGAGAAGAAACTTGAAGGATGTTCTATTAATCAGAGT-------------------------CTggtgtttcagac--aaagtccatttaatactgagcattggttact----------------------------------------------------------cgagtgatta------------------------------------------------------------------------------aa-gactgaag---------------------------------------------------cttctaagg----------------------------------------atgttgatgtaa--cccagaactcaacagctttaggaggttgctgccattcttcaggctagccag-ggagaaaaaagg---aagAATGAAAGAATCTGAAAGGAGATGAAGCTCGCCGCAGTTGGTACTTGGACCTCTTAGGGAATAAAAAAGCAATTGTTTCACACATACTAGACCACTGAGGGGTTCTGGCTGTTTTTTC-----AGCCATCTCAGAGGGGCTCTGTTGTGTGTTGGGAGAATGGGGGTG-GGCTATGTGGTACTCTTCCCA-CTCAGGTGAAGTGACATCAGGGCTAGAAGTGT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21167346 654 - 190850796 AGGAAACAACCCTGTTCGAAAATTGCTT-CCATAAGTGCTAGTGAAAGAATTATAAAGAAAGTACATAAGTTTAGTAATTTGACAGTAGAGTATTGTGGATTTGAGGATTCATGACATTCTTGGGATATATTTTAGAAAAACTGAGAAAGG---------------------GCTTCTGCACATAGCAAAAGAGGTAAAATTCAA-ATATGATGTAAAAATAAGCATTATGAGAGGATAAAAAAG-AATACATTGTATACATTGTGGAATTGG-AAAAGGAGGTGGCAGTTGAGAAGAAACTTGAAGGAT-CTCTATTAATCAGAGT-------------------------CTAGTGTTTCAGAC--AATGTCCATCTAATAATGAGCACTGGTTACT----------------------------------------------------------TGGGTTATTA------------------------------------------------------------------------------AAGGACTGCAG---------------------------------------------------CTTCTGGGA----------------------------------------ATG------------------CTCAACTGATTTAGGAAGTTGCTACCATTCTTCAGACTAGGAGGAGGAAAAGAAATG--AGAGGAAGAAAGAAGCTGAAAGGAGAAGAAGCTCTCTGCAGTTGGTGCTCGGACCTCTTAGGAG--AAAGAAGCCATTGTTTCGCACATACTAAACCACTGAGGGGGCCTGGCTATTTTCTC-----AGACATTCCAGCGGGGCCCTGCTGGGTGTTGGGAGGATAGGGGTG-GACTATATTGTTCTCCTCCCA-CTCAGGTGAAGTGCCATCAGGGCTGGAAATGT i calJac3.chr3 C 0 C 0 s canFam3.chr3 3750671 935 - 91889043 aGGAAACAACCCTCTTCAAAACTTGATAACAATGAGTGCCAGTGCAGGAGCTGAACAGAATGTATGAAAGTCTAAAACACTG-TGGTAATATTGTATGAGTTTGGGGGTTCAAGAAGGTCTTAGGATACATTTTC-AAAGACTAAGAAAGGTTTGtttgttttgttttgtttttttttgtACAAAGTAAAGGAGATGCCATTCAGTAAATGATGTAAAAATAAGTACTGGGAGGGGTTAAAGGTG-GGAAA---GTATCTGCTGTGGGGTCAG-GAAAGGAGGTGGCGTTTGAGAACAGCTCAGAAAAATGCTCCACCAGTCAGGGTTCAGGCAGGAAAACAGAAGCCCTGCCTGGTGCCTCTGACGGGGGGGAGATGTGATCTTTGGCATCGGTTCCTCCGGGGCGAGAGCTGAGACGACATGANNNNNNNNNNCCGGGGCCTGCCGTGCCCTGGCCGGGAAAGTATCTGCTGTGGGTTCAGGAAAGGAGGTGGCGTTTGAGAACAGCTCAGAAAAATGCTCCACCAGTCAGGGTTCAGGCAGGAA-AACAGAAGCCCTGCCTGGTGCCTCTGACGGGGGGGGAGATGTGATCTTTGGCATCGGTTCCTCCGGGGCTGAGAGCTGAAGACGACCATGAGGTCCTTCCTCTACACCATGCTGATATAATCCCCAGGCCAGAAGCACTTTAGGGAGCACTTCCCATCCCCTAGGCAGAAAAG-GGAGAGGGAGAAACAGAGAATTCAGATGTCAGGCAGG-------GCTCCCTGTGACGGGGGGTCAGATGTCCTATGGA----GGGGGCCAGGGCACGGCAGGCCCCGGGCCACAGAGGGG-CCTGGCC-TTTCCTC-----AGACCACCCACAGGGACATGGCTGGG-GCTGCAAGGACTGGGCCGTGGCTGCCCAACACTCTTCCCACCTCGGGTGCAACAAAGCTGGGGCAGAAAGTTT i canFam3.chr3 I 210 I 193 e mm10.chr5 49149225 565 + 151834684 I a score=934969.000000 s hg38.chr4_KI270790v1_alt 48648 273 + 220246 CAAGGAAGTTGGAGGCTGAAGCCATCGTTGTCTGCCTCAAATGGAGAGGGAGACCCAACCTGGAAGTCAGAAAAGAATCC-TTCTTCCAA---------CTTCCACCTCCTGTCCACATTTCCTACTGGCAAAATCTACCCAGAGA-TGGCTGAAAATGGGAGTCTGGAAAATGTAATTTTTGGAACCTTAATCCTAACTTCTCAGAAAAGAGT--------AGGTGGTG--------------GATAGCGGTAGGA-------CTTGGAACTAATAGCCAACAGGTAAAAGAGGCAGAGATGTAGAGGTTTT s panTro4.chr4 21436898 273 + 193495092 CAAGGAAGTTGGAGGCTGAAGCCATCGTTATCTGCCTCGAATGGAGAGGGAGACCCAACCTGGAAGTCAGAAAAGAATCC-TTCTTCCAA---------CTTCCACCTCCTGTCCACATTTCCTACTGGCAAAATCTACCCAGAGA-TGGCTGAAAATGGGAGTCTGGAAAATGTAATTTTTGGAACCTTAATCCTAACTTCTCAGAAAAGAGT--------AGGTGGTG--------------GATAGCGGTAGGA-------CTTGGAACTAATAGCCAACAGGTAAAACAGGCAGAGATGTAGAGGTTTT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21612683 273 + 198332218 CAAGGAAGTTGGAGGCTGAAGCCATAGTTGTCTGCCTCAAATGGAGAGGGAGACCCAACCTGGAAGTCAGAAAAGAATCC-TTCTTCCAA---------CTTCCACCTCCTGTCCACATTTCCTACTGGCAAAATCTACCCAGAGA-TGGCTGAAAATGGGAGTCTGGAAAATGTAATTTTTGGAACCTTAATCCTAACTTCTCAGAAAAGAGT--------AGGTGGTG--------------GGTAGCGGTAGGA-------CTTGGAACTAATAGCCAACAGGTAAAAGAGGCAGAGATGTAGAGGTTTT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20224556 273 - 85365473 CAAGGAAGTTGGAGGCTGAAGCCATAGTTGTCTGCCTCAAATGGAGGGGGATACCCAACCTGGAAGTCAGAAAAGAATCC-TTCTTCCAA---------CTTCCACCTCCTGTCCACATTTCCTACTGGCAAAATCTACCCAGAGA-TGGCTGAAAATGGGAGTCTGGAAAATGTAATTTTTGGAACCTTAATCCTAACTTCTCGGAAAAGAGT--------AGGTGGTG--------------GGTAGTGGTAGGA-------CTTGGAACTAATAGCCAACAGGTAAAAGAGGCAGAGATGTAGAGGTTTT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16690925 273 + 184069350 CAAGGAAGCTGGAGGCTGAAGCCATAGTTCTCTGCCTCAAATGGAGAAGGAGACCCAACCTGGAAGTCAGAAAAGAATcc-ttcttccaa---------cttccacctcctgtccacatttcctactggcaaaatctacccagaga-tggctgaaaatgagagtctggaaaatgtaatttttggaaccttaatgctaacttctcagaaaagagt--------aggtggta--------------ggtaggggtagga-------ctcggaactaatagctaacaggtagaagaggcaGAGATGTAGAGGTTTT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20732838 273 + 189454096 CAAGGAAGCTGGAGGCTGAAGCCATAGTTCTCTGCCTCAAATGGAGAAGGAGACCCAACCTGGAAGTCAGAAAAGAATCC-TTCTTCCAA---------CTTCCACCTCCTGTCCACATTTCCTACTGGCAAAATCTACCCAGAGA-TGGCTGAAAATGAGAGTCTGGAAAATGTAATTTTTGGAACCTTAATGCTAACTTCTCAGAAAAGAGT--------AGGTGGTA--------------GGTAGGGGTAGGA-------CTCGGAACTAATAGCTAACAGGTAGAAGAGGCAGAGATGTAGAGGTTTT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16328943 273 + 178775436 CAAGGAAGCTGGAGGCTGAAGCCATAGTTCTCTGCCTCAAATGGAGAAGGAGACCCAACCTGGAAGTCAGAAAAGAATCC-TTCTtccaa---------cttccacctcctgtcCACATTTCCTACTGGCAAAATCTACCCAGAGA-TGGCTGAAAATGAGAGTctggaaaatgtaatttttggAACCTTAATGCTAACTTCTCAGAAAAGAGT--------AGGTGGTA--------------GGTAGGGGTAGGA-------CTCGGAACTAATAGCTAACAGGTAGAAGAGGCAGAGATGTAGAGGTTTT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19815968 273 - 48547382 CAAGGAAGCTGGAGGCTGAAACCATAGTTCTCTGCCTCAAATGGAGAAGGAGACCCAACCTGGAAGTCAGAAAAGAATCC-TTCTTTCAA---------CTTACACCTCCTGTCCACATTTCCTACTGGCAAAATCTACCCAGAGA-TGGCTGAAAATGAGAGTCTGGAAAATGTAATTTTTGGAACCTTAATGCTAACTTCTCAGAAAAGAGT--------AGGTGGTA--------------GGTAGGGGTAGGA-------CTCGGAACTAATAGCTAACAGGTAGAAGAGGCAGAGATGTAGAGGTTTT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21168000 281 - 190850796 CAAGGAAGCTGGAGGCTGAAGCCATAATTATCTGCCTCAAATGGAGAAGGAGATCTAACCTGGAAGCCACAAAAGAATCC-TTCTCCCAA---------CTTCTACCTCCTGTCCACATTTCCTACTGGCAAAATCTACTTGGAGATTGGCTGAAAATGGAAGTCTAGAAAATGTAATTTTTGGAACCTTAATCCTAGCTTCTCAGAAAAGAGTAGATAAGGAGGTGGTG--------------GGTAGGGGTAAGA-------CTTGGAACTAACAGTCAACAGGTAAAAAAGG-AGAGATGTAGAGGTTTA i calJac3.chr3 C 0 C 0 s canFam3.chr3 3751799 292 - 91889043 CACAGAAATTGGGGACTAAAGCCAACGTTTCCCACCTCTTATGGAGAACGAGATCCAACCTGGAGGCCAGAGAAAAGTCCAGTCTCCCCATCTGTGTCTTTCTCATCCCTCATCAGTGTTCCCCAGTGGTAAACC------------TGGCTGGCAATG-GATTCTGGGAAATGTGGTTTGGGGAGTCTCAATTTCAGCTTCTTAGGAGAAAAT--------AGATAACGTGTGTGTGTTATGTGGCAGAGGCAGGAGGTGATGCTTGGACCTAAGAGCCTACAGGTAAAACAGGAAGGGATGCAAAGGTTTT i canFam3.chr3 I 193 I 493 e mm10.chr5 49149225 565 + 151834684 I a score=1387659.000000 s hg38.chr4_KI270790v1_alt 48921 426 + 220246 AATGTAAAGAAACAGGGTGAAAAGGAGGTATTTCCCGTTTCCTGAAGGCCCTGAGCATTGGTAAAGAGTCTGGAATGGAAAAGGACAGTTTGGTCAATAATGGTGATTCCCTGATGTA-GGTCAGAAATGGGTCTAGGTGATAGAAATGTTAACGTGAACAAAATATACAATAGCTGTTTGTAGACTATTTAATTTAACCTTAGCATCAAGCATGTAATATAGGAAGAAGTAGAAAATAAGTCTAAAAAGGGAGGACAGGAGCCTAGAACTGCATTCTGGATAACTTGTGGCATCCATATGGGAGAAGGATATATAACTCAATAAATCATGTTTAATA-TCAGTGGCTTTTGAAAATGAGTCTG-AAGCATGTCAATGGATTAGGAACATTAATTCAGAGGGTTTATAGAATAGATTCACTTTTCCTAA s panTro4.chr4 21437171 426 + 193495092 AATGTAAAGAAACAGGGTGAAAAGGAGGTATTTCCCATTTCCTGAAGGCCCTGAGCATCGGTAAAGAGTCTGGAATGGAAAAGGACAGTTTGGTCAATAATGGTGATTCCCTGATGTA-GGTCAGAAATGGGTCTAGGTGATAGAAATGTTAACGTGAACAAAATATACAATAGCTGTTTGTAGACTATTTAATTTAACCTTAGCATCAAGCATGTAATATAGAAAGAAGTAGAAAATAAGTCTAAAAAGGGAGGACAGGAGCCTAGAACTGCATTCTGGATAACTTGTGGCATCCATATGGGAGAAGGACATATAACTCAATAAATCATGTTTAATA-TCAGTGGCTTTTGAAAATGAGTCTG-AAGCATGTCAATGGATTAGGAACATTAATTCAGAGGGTTTATAGAATAGATTCACTTTTCCTAA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21612956 426 + 198332218 AATGTAAAGAAACAGGGTGAAAAGGAGGTATTTCCAGTCTCCTGAAGGCCCTGAGCGTTGGCAAAGAGTCTGGAATGGAAAAGGACAGGTTGGTCAATAATGGTGATTCCCTGATGTA-GGTCAGAAATGGGTCTAGGTGATAGAACTGTTAATGTGAACAAAATATACAATAGCTGTTTGTAGACTATTTAATTTAACCTTAGCATCAAGCATGTAATATCGGAAGAAGTAGAAAATAAGTCTAAAAAGGGAGGACAGGAGCCTAGAACTGCATTCTGGATAACTTGTGGCATCCATATGGGAGAAGGACATATAACTCAACAAATCATGTTTAATA-TCAGTGGCTTTTGAAAATGAGTCTG-AAGGATGTCAATGGATTAGGAACATTAATTCAGAGGGTTTATAGAATAGATTCACTTTTCCTAA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20224829 426 - 85365473 AATGTAAAGAAACAGGGTGAAAAGGGGGTACTTCCAGTCTCCTGAAGGCCCTGAGCATTGGCAAAGAGTCTGGAATGGAAAAGGACAGGTTGGTCAATAATGGTGATTCCCTGATGTA-GGTCAGAAATGGGTCTAGGTGATAGAAATGTTAACGTGAACAAAATATACAATAGCTGTTTGTAGACTATTTAATTTAACCTGAGCATCAAGCATGTAATATAGGAAGAAGTAGAAAATAAGTATAAAAAGGGAGGACAGGAGCCTAGAACTGCATTCCGGATAACTTGTGACATCCATATGGGAGAAAGACATATAACTCAATAAATCATGTTTAATA-TCAGTGGCTTTTGAAAATGAGTCTG-AAGCATGTCAGTTGATTAGGAACATTAATTCAGAGGGTTTATAGAATAGATTCACTTTTCCTAT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16691198 422 + 184069350 AACGTAAAGAAACAGGGTGAAAAGGATGTACTTCCAGTCTCTTGAAGGCCCTGAGCATCAGCAAAGAGTCTGGAATGGAGAAGAACAGGTTGGTCAATAACGGTGATTCCCTGATGTA-GGTCAGAAATGGGTCTAGATGATAGAAATGTTAACATGAACAAAATAGACAATAGC----TGTAGACTATTTAATTTAACCTGAGCATCAAGCATGTAACATAGGAAGAAGTAGAAAATAAGTCTAAAAAGGGAGGACAGGAGCCTAGAACTGCATTCTGGATAACTTGTGGCATCCATATGGGAGAAGGACATATAACTCAATAAATCATGTTTAATA-TCAGTGGCTTTTGAAAATGAGTCTG-AAGCATGTCAGTGGATTAGGAACATTCATTCAGAGGGCTTATAGAATAGATTTACCTTTCCTAA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20733111 422 + 189454096 AACGTAAAGAAACAGGGTGAAAAGGAGGTACTTCCAGTCTCTTGAAGGCCCTGAGCATCAGCAAAGAGTCTGGAATGGAGAAGAACAGGTTGGTCAATAACGGTGATTCCCTGATGTA-GGTCAGAAATGGGTCTAGATGATAGAAATGTTAACATGAACAAAATAGACAATAGC----TGTAGACTATTTAATTTAACCTGAGCATCAAGCATGTAACATAGGAAGAAGTAGAAAATAAGTCTAAAAAGGGAGGACAGGAGCCTAGAACTGCATTCTGGATAACTTGTGGCATCCATATGGGAGAAGGACATATAACTCAATAAATCATGTTTAATA-TCAGTGGCTTTTGAAAATGAGTCTG-AAGCATGTCAGTGGATTAGGAACATTCATTCAGAGGGCTTATAGAATAGATTTACCTTTCCTAA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16329216 422 + 178775436 AACGTAAAGAAACAGGGTGAAAAGGAGGTACTTCCAGTCTCTTGAAGGCCCTGAGCATCAGCAAAGAGTCTGGAATGGAGAAGAACAGGTTGGTCAATAATGGTGATTCCCTGATGTA-GGTCAGAAATGGGTCTAGATGATAGAAATGTTAacatgaacaaaatagacaataGC----TGTAGACTATTTAATTTAACCTGAGCATCAAGCATGTAACAtaggaagaagtagaaaataagtCTAAAAAGGGAGGACAGGAGCCTAGAACTGCATTCTGGATAACTTGTGGCATCCATATGGGAGAAGGACATATAACTCAATAAATCATGTTTAATA-TCAGTGGCTTTTGAAAATGAGTCTG-AAGCATGTCAGTGGATTAGGAACATTCATTCAGAGGGCTTATAGAATAGATTCACCTTTCCTAA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19816241 422 - 48547382 AACGTAAAGAAACAGGGTGAAAAGGAGGTACTTCCAGTCTCTTGAAGGCCCTGAGCATCAGCAAAGAGTCTGGAATGGAGAAGAACAGGTTGGTCAATAATGGTGATTCCCTGATGTA-GGTCAGAAATGGGTCTAGATGATAGAAATGTTAACATGAACAAAATAGACAATAGC----TGTAGACTATTTAATTTAACCTGAGCATCAAGCATGTAACATAGGAAAAAGTAGAAAATAAGTCTAAAAAGGGAGGACAGGAGCCTAGAACTGCATTCTGGATAACTTGTGGCATACATATGGGAGAAGGACATATAACTCAATAAATCATGTTTAATA-TCAGTGGCTTTTGAAAATGAGTCTG-AAGCATGTCAGTGGATTAGGAACATTCATTCAGAGGGCTTATAGAATAGATTCACCTTTCCTAA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21168281 387 - 190850796 AATGTAAAGCAACAGGGTG-AAAGAAGGTAATTCCAGTCTCCTGAAGG-CCTGAGCATCAGCAAAGAGTCTGGAATGGGCAAGGACAGGTTGGCCAATGGTGGCGATTCCCTGATGTG-GGTCAGAAATGGGTCTAGGTGATAGAAATATTAAAGTGAATGAAATAGGCAATAGCTGTTTGTAGACTATTTAATTTAACCTGAGCATCAAACTTGTAAAA--GGAAAAAGTAGTGAATAAGTCTAAAAAGGAAGGACAGGAGCCTAGAACTGCATTCTGGATCACTTGTGGCATCCATGTGGGAG---GACATGTAACTC------CCATGGTTAATA-TCCGAGGCTTTTGAAAAT---------------------------GAATATTAATTCAGAAGGCTTATAGAATAGATTCACTTTTGCTGA i calJac3.chr3 C 0 C 0 s canFam3.chr3 3752584 419 - 91889043 aaTAAAAATAAATAGGGTAGAAAGT-GGTATTTAGAGTCTCCTGAAGCACCCGGATACAGGCAAGGTGTCCGGAATGAACA--GAAAGGTCAGTCGAACATGCAGAGTCCCTGATGCGTTGCCAGGAA-GGATCCAGGTGCTGGAGATGTGAGGGTGGGCAAAGGAGGCAGCGGTGGTTAGTGCATTATGTAATTTAACTTGAGCATCAAATGTATATTAGGGAAATAAGTAGGAAATAAGACTAAAACGGGAGGAGGAAAGCCTAGAACTGTATTCTGGATAGCCCAGGACACCACCAAGGGGGAAATGCATACAATTCAATAAACCATGGCTAATCTTCAGTGGTTGGTGAAAGTGGACCTGCACGTCTGTCAGTGGGTTAGCAGCATTAATTCAGAG------TAAAACAGATTTACTTTTCCTAA i canFam3.chr3 I 493 C 0 e mm10.chr5 49149225 565 + 151834684 I a score=6093208.000000 s hg38.chr4_KI270790v1_alt 49347 1735 + 220246 TAGTCAAAGTTattattttatcattttcatcattatcattgtcatcattatca-taattacaatg-----tttatccagtactcaatatatagcagaaattgagcacttt-cctatatcacatcgaaccctccaaacaacactatacagcagctgttattttccctattttatatgggaagtaactgaagatcaaatagagtacatcttttggtcaaagtcatattggttcgaagtggttgaacctggattcaaactcaagtctgaccctagatttctttctcttaagcattacatgctTCTCCGTTTGAGAAAAGGACATCTAGACTCACATCTCCTTTCAAAATATTGTCATCCATGAGGTCACCTCAAGACTCAAGTGCCACCTGGCAGCTTGAGCCATTTCTC-TAAGTTCTTCGTTCAGTTCATTTATAATCCCCTCTGAGTG-----TTACTTCTCCGCCTTCTCACTTCTTTAG-GTTTGTCACAGTCCTCTGAGATGACAGGCTGAGCAATGGTGATGAGAATTATGGTAATATAAATTCCATAAACAGAAGAGTCTACCAGGAGTGGACACAAAGAAGTTCACAGAGGGCGCATCTGGGTGAGAACAGCCCCAGCTGTTATAGCATAT-GTGCAAAATAATGATGTGCCTGCACATCCATGCAGACCTGATCCTAGCTGTTTATAAGAAAGGATAGTTAAATGCAGAAATGCAAATCTGTAGGCTGGAGTTGCTCTGTTTCCTAAGTCTTAAGAGTTTGGCTCCTTA-TCTTACACACAAAAATGCAATAGACAA-AACCTCCACATAAATAAGCAGCAGGTGAACTAGCATTTTCTTGCCAAGGTATTATGCAAGTGTTAA-CTGAGCTGATCAGCAGAAGCACATATCCATCAGTTTCACTGC--AGAAAGCAGGAAGAGGAAGGTGAAGATGAGCAGGC-AAGTTAAATGAAAACTCATCTGGCTTGCAGAAGAGACACTTATTGCTCAGAGGAGGAAGGTGCCCAGGGGT-CATGAGATGTGACAGTACTAACAGAAAATCCTGAGCTTGCAAACTCTGATAAATGTTTAAGATTTAAT-GGGGAGTGTCCACACAAATGCAAAATGATTTAGAAAAAGGTAAATGATCAT-AACAATGTTAATAACATCtatcaagcactttgctgagtattttgcttacattaataccccattatctaatcaaactcataggatatgtatggcacactatttcattga---agaaacagattcttagagatgtaaagtaactttccaaaagtATAGGTATTTTAGATATA--------TATATTATAGACCTAGCAAATAAGATGCAAAAAtagaatttaaacttagaactgcctaacttagaaattaCTATAACCAAAT-GCT--CTACTTCACATCCTGATTGCTGGGGATT---C--CATTTGAAATAGCCAGATCATATATAAGTAC----ATATCTGTACACAGAAGTA----CATCTATTTCTAAAAGAGACTGC----------------------TACTTGTCAAATA----------------------------------------------GTCAGGCAAGTATGTG---TTTTGGCTCTGTGATGTGATAGGACCAGTTTTGAATCTCCTATTTTAACAAAATGTGTTGCTTA----TTTTTGTTATTTTACAT---------------------------CATGGAAACTTA-GTTTGTTCAGCCTGAAGAGTTTATG-----------ATGGCCTCCTGTATTCTTCCTGTAACGTGTTCAAATTCTAGGGTAAAATAAATTTAAAACACAAACCCAGGATGTGTCCTTTTAAGCTCTTATAAAGGATATCATGTAGATAA s panTro4.chr4 21437597 1735 + 193495092 TAGTCAAAGttattattttatcattttcatcattatcattgtcatcattatCa-taattacaatg-----tttatccagtactcaatatatagcagaaattgagcacttt-cctatatcacatcgaaccctccaaacaacactatacagcagctgttattttccctattttatatgggaagtaaatgaagatcaaatagagtacatcttttggtcaaagtcatattggtttgaagtggttgaacctggattcaaactcaagtctgaccctagatttctttctcttaagcattacatgctTCTCCGTTTGAGAAAAGGACATCTAGACTCACATCTCCTTTCAAAATATTGTCATCCACGAGGTCACCTCAAGACTCAAGTGCCACCTGGCAGCTTGAGCCATTTCTC-TAAGTTCTTCGTTCAGTTCATTTATAATCCCCTCTGAGTG-----TTACTTCTCCTCCTTCTCACTTCTTTAG-GTTTGTCACAGTCCTCTGAGATGACAGGCTGAGCAATGGTGATGAGAATTATGGTAATATAAATTCCATAAACAGAAGAGTCTGCCAGGAGTGGACACAAAGAAGTTCACAGAGGGCGCATCTGGGTGAGAACAGCCCCAGCTGTTACAGCATAT-GTGCAAAATAATGATGTGCCTGCACATCCATGCAGACCTGATCCTAGCTGTTTATAAGAAAGGATAGTTAAATGCAGAAATGCAAATCTGTAGGCTGGAGTTGCTCTGTTTCCTAAGTCTTAAGAGTTTGGCTCCTTA-TCTTACACACAAAAATGTAATAGACAA-AACCTCCACATAAATAAGCAGCAGGTGAACTAGCATTTTCTTGCCAAGGTATTATGCAAGTGTTAA-CTGAGCTGATCAGCAGAAGCACATATCCATCAGTTTCACTGC--AGAAAGCAGGAAGAGGAAGGTGAAGATGAGCAGGC-AAGTTAAATGAAAACTCATCTGGCTTGCAGAAGAGACACTTATTGCTCAGAGGAGGAAGGTGCCCAGGGGT-CATGAGATGTGACAGTACTAACAGAAAATCCAGAGCTTGCAAACTCTGATAAATGTTTAAGATTTAAT-GGGGAGTGTCCACACAAATGCAAAATGATTTAGAAAAAGGTAAATGATCAT-AACAATGTTAATAACATCtatcaagcactttgctgagtattttgcttacattaataccccattatctaatcaaactcataggatatgtatggcacactatttcattga---agaaacagattcttagagatgtaaagtaactttccaaaagtataggtattttagatata--------tatattatagacctagcaaataagatgcaaaactagaatttaaacttagaactgcctaaGTTAGAAATTACTATAACCAAAT-GCT--CTACTTCACATCCTGATTGCTGGGGATT---C--CATTTGAAATAGCCAGATCATATATAAGTAC----GTATCTGTACACAGAAGTA----CATCTATTTCTAAAAGAGACTGC----------------------TACTTGTCAAATA----------------------------------------------GTCAGGCAAGTATGTG---TTTTGGCTCTGTGATGTGATAGGACCAGTTTTGAATCTCCTATTTTAACAAAATGTGTTGCTTA----TTTTTGTTATTTTACAT---------------------------CATGGAAACTTA-GTTTGTTCAGCCTGAAGAGTTTATG-----------ATGGCCTCCTGTATTCTTCCTGTAATGTGTTCAAATTCTAGGGTAAAATAAATTTAAAACACAAACCCCGGATGTGTCCTTTTAAGCTCTTATAGAGGATATCATGTAGATAA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21613382 1735 + 198332218 TAGTCAAAGTTATTATTTTATCATTTTCATCATTATCATTGTCATCACTATCa-taattacaatg-----tttatccagtactcaatatatagcagaaattgagcacttt-cctatagcacatcgaaccctccaaacaacactatacagcagctgttattttccctgttttatatgggaagtaaatgaagatcaaatagaatacattttttggtcaaagtcatattggttctaagtggttgaacctggattcaaactcaagtctgaccctagatttctttctcttaagcattacatgctTCTACGTTCGAGAAAAGGACATCTAGACTCACACCTCCTTTCAAAATATTGTCATCCACAAGGTCACCTCAAGACTCAAGTGCCACCTGGCAGCTTGAGGCATTTCTCTTAAGTTCTTCATTCAGTTCATTTATAATCCCCTCTGAGTA-----TTACTTCTCCTCCTTCTCACTTCTTTAG-GTTTGTCACAGTCCTCTGAGATGACAGGCTGAGCAATGGTGATGAGAATTATGGTAATATAAATTCCATAAACAGAAGAGTCTGCCAGGAGTGGACACAAAGAGGTTCACAGAGGGCGCATCTGGGTGAGAGCAGCCCCAGCTGTTATAGCATAT-GTGCAAAATACTGATGTGCCTGCACATCCATGCAGACCTGATCCTAGCTGTTTATAAGAAAGGATAGTTAAATGCAGAAATGCAAATCTGTAGGCTGGA-TTGCTCTGTTTCCTAAGTCTTAAGAGTTTGGCTCTTTA-TCTTACACACATAAATGCAGTAGACAA-AACCTCCACATAAATAAGCAGCAGGTGCACTAGCATTTTCTTGCCAAGGTATTATGCAAGTGTTAA-CCGAGCTGATCAGCAGAAGCACACATCCATCAGTTTCACTGC--AGAAAGCAGGAAGAGGAAGGTGAAGATGAGCAGGC-AGGTTAAACAAAAACTCATCTGGCTTGCAGAAGAGACACTTATTGCTCAGAGGAGGAAAGTGCCCAGGGGT-CATGAGATGTGACAGTACTAACAGAAAATCCAGAGATTGCAAACTCTGATAAATGTTTAAGATTTAAT-GGGGAGTGTCCACACAAATGCAAAATGATTTAGAAAAAGGTAAATGATCAT-AACAATGTTAATAACATCtatcaagcactttgttgagtattttgcttacattaataccccattatctaatcaatctcataggatatgtatggcacactatttcattga---agaaacagattcttagagatgtaaagcaactttccaaaagtATAGGTATTTTAGATGTA--------GATATTACAGACCTAGCAAATAAGATGCAAAAATAGAATTTAAACTTAGAACTGCCTAAGTTAGTAATTACTATAACCAAAT-GCT--CTACTTCACATCCTGATTGCTGGGGATT---C--CATTTGAAATAGCCAGATCATATATAAGTGT----GTATCTGTAAACAGAAGTA----CATCTATTTCTAAAAGAGACTGC----------------------TACTTGTCAAATA----------------------------------------------TTCAGGCAAGTATGTG---TTTTGGCTCTGTGATGTGATAGGACCAGTTTTGAATCTCCTATTTTAACAAAATGTACTGCTTA----TTTTTGCTATTTTACAT---------------------------CATGGAAACTTA-GTTTGTTCAGCCTGAAGAGTTTATG-----------ATGGCCTCCTGTATTCTTCCTGTAATGTGTTCAAATTCTAGGGTAAAATAAATTTAAAACACAAACCCAGGATGTGTCCTTTTAAGCTCTTCTATAGGATATCATGTAGATAA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20225255 1736 - 85365473 TAGTCAAAGttatcattttatcattttcatcattatcattgtcatcattatCa-taattataatg-----tttatccagtactcaatatatagcagaaattgagcacttt-cctatatcacattgaaccctccaaacaacactatactgcagctgttattttccctattttatatgggaagtaaatgaagatcaaagagaatacatttcttggtcaaagtcatattggttctaagtggttgaaactggattcaaactctagtctgaccctagatttctttctcttaagcattacatgctTCTCCGTTTGAGAAAAGGACATCTAGACTCACACCTCCTTTCAAAATATTGTCATCCATGAGGTCACCTCAAGACTCAAGTACCACCTGGCAGCTTGAGCCATCTCTC-TAAGTTCTTAGTTCAGTTCATTTATAATCCCCTCTGAGTA-----TTACTTCTCCTCCTTGTCACTTCTTTAACGTTTGTCACAGTCCTCTGAGATGACAGGCTGAGCAATGGTGATGAGAATTATGGTAACATAAATTCCATAAACAGAAGAGGCTGCCAGGAGTGGACACAAAGAAGTTCACAGAGGGCACATCTGGGTGAGAACAGCCCCAGCTGTTATAGCATAT-GTGCAAAATACTGATGTGCCTGCACATCCATGCAGACCTGATCCTAGCTGTTTATAGGAAAGGATAGTTAAATGCAGAAATATAAATCTGTAGGCTGGAGTTGCTCTGTTTCCTAAGTCTTAAGAGTTTGGCTCTTTA-TCTTACACACATAAATGCAGTAGACAA-AACCTCCACATAAATAAGAAGCAGGTGCACTAGCATTTTCTTGTCAAGGTATTATGTAAGTGTTAA-CCAAGCTGATCAGCAGGAGCACACATCCATCAGTTTCACTGC--AGAAAGCAGGAAGAGGAAGGTGAAGATGAGTAGGC-AGGTTAAATGAAAACTCACCTGGCTTGCAGAAGAGATACTTATTGCTCAGAGGAGGAAGGTGCCCGGGGGT-CATGAGATGTGACAATACTAACAGAAAATCCAGAGCTTGCAAACCCAGATAAATGTTTAAGATTTAAT-CGGGAGTGTCTACACAAATTCCAGATGATTTAGAAAAAGGTAAATGATCAT-AACAATGTTAAtaatatctatcaagcattttgctgagtattttgcttagattaataccccattatctaatcaaactcataggatatgtatggcgcactatttcattga---agaaacagattcttagagatgtaaagtaactttccaaaagtATAGATATTTTAGATATA--------GATATTATAGACCTAGCAAATAAGATGCAAAAATAGAATTTAAACTTAGAACTGCCTAAGTTAGTAATTACTATAACCAAAT-GCT--CTACTTCACATCCTGATTGCTGGGGATT---C--CATTTGAAATAGCCAGATCATATATAAGTGT----GTGTCTGTACACAGAAGTA----GATCTATTTCTAAAAGAGACTGC----------------------TACTTGTCAAATA----------------------------------------------TTCAGGCAAGTATGTG---TTTTGGCTCTGTGATGTGATAAGACCAGTTTTGAATCTCCTATTTTAACAAAATGTGCTGCTTA----TTTTTGTTATTTTACAT---------------------------CATGGAAACTTA-GTTTGTTCAGCCTGAAGAGTTTATG-----------ATGGCCTTCTATATTCTTCCTGTAATGTGTTCAAATTCTAGGGTAAAATAAATTTAAAACACAAACCCAGGATGTGTCCTTTTAAGCTCTTATAGAGGATATCATGTAGATAA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16691620 1726 + 184069350 TAGTCAAAGttattattttatcattttcatcattatcattgtcattattatca-taattatATGG-----tttatccagtactcaatatatagcagaaattgaggacttt-cctatatcacattgaaccctcaaaacaacactatacagcagctgttattttacctgttttatatgggaagtaaatgaagatcaaagagaatacattttctggtcaaagtcatattggttctaagtggttgaacctggattcaagctcaagtctgaccccagatttctttctcttaaGAATTACACGCTTCTACATTTGAGAAAAGGACATCTAGATTCACACAACCTTTCAAAATATTGTCATCCACAAGGTCACCTCAAGACTCAAGTACCACCTGGCAGCTTGAGCCATCTCTC-TAAGTTCTTAGTTCAGTTCATTTATAATCCCCTCTGAGTA-----TTAGTTCTCCTCCTTCTCACTTCTTTAG-GTTTGTCACAGTCCTCTGAGACGACAGGCTGAGCAATGGTGATGAGAATTATGGTAATATAAATTCCACAAACAGAAGACGCTGCCAGGAGTGGACACAAAGAGGTTCACAGAGGGCACATCTGGGTGAGAGCAGTCCCAGCTGTTATAGCATAT-GTGCAAAATACTGATGGGCCTGCACATCCATGCAGACCTGATCCTAGCTGTTTATAAGAAAGGATAGTTAAACTCAGAAATGCAAATCTGTAGGCTGGAGTTGCTCTGTTTCCTAAGTCTTAAGAGTTTGGCTCTTTA-TCTTACACACATAAATGCAGTAGACAA-AACCTCCCCATAAATAAGCAGCAGGTGCACTAGTATTTTCTTGCCAAGGTATTATGCAAGTGTTAA-CCGAGCTGATCAGCAGAAGCACACATCCATCAGTTTCACTGC--AGAAAGCAGGAGGAAGAGGGTGAAGATGAGCAGGC-GGGTTAAATGAAAACTCATCTGGCTTGCAGAAGAGACACTTACTGCTCAGAGGAGGAAGGCGCCCAGGGGT-CATGAGATGTTATAGCACTAACAGAAAATTCAGAGTTTGC-AACTCTGATAAATATTTAAGATTTAAT-GGGGAGTGTCCACACAAATGCAAAATG----AGAAAAAGGTAAGCGATCAT-AACAATGTTAATAACAtgtatcaagcactttgctgagtattttgcttacattaataccccattatcaaaacaaactcataggatatgcatggtgcgctattgcattga---acaaacagattcttagagatgtaaagtaactttccaaaagtATAGATATTTTAGATATA--------GACATTATAGACCTAGCAAATAAGATGCAGAAATAGAATTTAAACTTAGAACTGCC----TTAGTAATTACTACAACCAAAT-GTT--CTACTTTACATCCTGATTGCTGGAGACT---C--CATTCGAAATAGCCAGATCATATATAAGTAC----GTATCTGTACACAGAAGTA----CATCTATTTCTAAAAGAGACTGC----------------------TACTTGTCAAATA----------------------------------------------TTCAGGCAAGTATGTG---TTTTGGCTGTGTGATGTGATAAGACCAGTTTTGAATCTCATATTTTAACAAAATGTGCTGCTTA----TTTTTGTTATTTTGCAT---------------------------CAAGGAAACTTA-GTTTGTTCAGCCTGAAGAGTTTATG-----------ATGGCCTCCTGTATTCTTCTTGTAATGTGTTCAAACTCTAGGGTAAAATCAATTAAAAACACAAACCCAGGATGTGCCCTTTTAAGCTTTCATATAGAATACCATGTAGATAA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20733533 1726 + 189454096 TAGTCAAAGttattattttatcattttcatcattatcattgtcattattatca-taattatATGG-----tttatccagtactcaatatatagcagaaattgaggacttt-cctatatcacattgaaccctcaaaacaacactatacagcagctgttattttacctgttttatatgggaagtaaatgaagatcaaagagaatacattttctggtcaaagtcatattggttctaagtggttgaacctggattcaagctcaagtctgaccccagatttctttctcttaaGAATTACACGCTTCTACATTTGAGAAAAGGACATCTAGATTCACACAACCTTTCAAAATATTGTCATCCACAAGGTCACCTCAAGACTCAAGTACCACCTGGCAGCTTGAGCCATCTCTC-TAAGTTCTTAGTTCAGTTCATTTATAATCCCCTCTGAGTA-----TTAGTTCTCCTCCTTCTCACTTCTTTAG-GTTTGTCACAGTCCTCTGAGACGACAGGCTGAGCAATGGTGATGAGAATTATGGTAATATAAATTCCACAAACAGAAGAGGCTGCCAGGAGTGGACACAAAGAGGTTCACAGAGGGCACATCTGGGTGAGAGCAGTTCCAGCTGTTATAGCATAT-GTGCAAAATACTGATGGGCCTGCACATCCATGCAGACCTGATCCTAGCTGTTTATAAGAAAGGATAGTTAAACTCAGAAATGCAAATCTGTAGGCTGGAGTTGCTCTGTTTCCTAAGTCTTAAGAGTTTGGCTCTTTA-TCTTACACACATAAATGCAGTAGACAA-AACCTCCCCATAAATAAGCAGCAGGTGCACTAGTATTTTCTTGCCAAGGTATTATGCAAGTGTTAA-CCGAGCTGATCAGCAGAAGCACACATCCATCAGTTTCACTGC--AGAAAGCAGGAGGAAGAGGGTGAAGATGAGCAGGC-GGGTTAAATGAAAACTCATCTGGCTTGCAGAAGAGACACTTATTGCTCAGAGGAGGAAGGCGCCCAGGGGT-CATGAGATGTTATAGCACTAACAGAAAATTCAGAGTTTGC-AACTCTGATAAATGTTTAAGATTTAAT-GGGGAGTGTCCACACAAATGCAAAATG----AGAAAAAGGTAAGCGATCAT-AACAATGTTAATAACATGTATCAAGCACTTTGCTGAGTATTTTGCTTACATTAATACCCCATTATCAAAACAAACTCATAGGATATGCATGGTGCGCTATTGCATTGA---ACAAACAGATTCTTAGAGATGTAAAGTAACTTTCCAAAAGTATAGATATTTTAGATATA--------GACATTATAGACCTAGCAAATAAGATGCAGAAATAGAATTTAAACTTAGAACTGCC----TTAGTAATTACTACAACCAAAT-GTT--CTACTTTACATCCTGATTGCTGGAGACT---C--CATTCGAAATAGCCAGATCATATATAAGTAC----GTATCTGTACACAGAAGTA----CATCTATTTCTAAAAGAGACTGC----------------------TACTTGTCAAATA----------------------------------------------TTCAGGCAAGTATGTG---TTTTGGCTGTGTGATGTGATAAGACCAGTTTTGAATTTCATATTTTAACAAAATGTGCTGCTTA----TTTTTGTTATTTTGCAT---------------------------CAAGGAAACTTA-GTTTGTTCAGCCTGAAGAGTTTATG-----------ATGGCCTCCTGTATTCTTCTTGTAATGTGTTCAAACTCTAGGGTAAAATCAATTAAAAACACAAACCCAGGATGTGCCCTTTTAAGCTTTCATATAGAATACCATGTAGATAA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16329638 1723 + 178775436 TAGtcaaagttattattttatcattttcatcattatcattgtcatcattatca-taattatatgg-----tttatcCAGTACTCAATATATAGCAGAAATTGAGGACTTT-CCTATATCACATTGAACCCTCAAAACAACACGATACAGCAGCTGTTATTTTACCTGTTTTATATGGGAAGTAAATGAAGATcaaagagaatacattttttgGTCAAAGTCATATTGGTTCTAAGTGGTTGAACCTGGATTCAAGCTCAAGCCTGACCCcagatttctttctcttaagAATTACACGCTTCTACATTTGAGAAAAGGACATCTAGATTCACACCATCTTTCAAAATATTGTCATCCACAAGGTCACCTCAAGACTCAAGTTCCACCTGGCAGCTTGAGCCATCTCTC-TAAGTTCTTAGTTCAGTTCGTTTATAATCCCCTCTGAGTA-----TTAGTTCTCCTCCTTCTCACTTCTTTAG-GTTTGTCACAGTCCTCTGAGATGACAGGCTGAGCAATGGTGATGAGAATTATGGTAATATAAATTCCACAAACAGAAGAGGCTGCCAGGAGTGGACACAAAGAGGTTCACAGAGGGCACATCTGGGTGAGAGCAGTCCCAGCTGTTATAGCATAT-GTGCAAAATACTGATGTGCCTGCACATCCATGCAGACCTGATCCTAGCTGTTTATAAGAAAGGATAGTTAAACTCAGAAATGCAAATCTGTAGGCTGGAGTTGCTCTGTTTCCTAAGTCTTAAGAATTTGGCTCTTTA-TCTTACACACATAAATGCAGTAGACAA-AACCTCCCCATAAATAAGCAGCAGGTGCATTAGCATTTTCTTACCAAGGTATTATGCAAGTGTTAA-CCGAGCTGATCAGCAGAAACACACATTCATCAGTTTCACTGc--agaaagcaggaggaagagggtgaAGATGAGCAGGC-GGGTTAAATGAAAACTCATCTGGCTCGCAGAAGAGACACTTATTGCTCAGAGGAGGAAGGCGCCCAGGGGT-CATGAGATGTTATAGCACTAACAGAAAATCCAGAGTTTGC-AACTCCGATAAATGTTTAAGATTTAAT-GGGGAGTGTCCACACaaatgcaaaatg----agaaaaaggtaAGTGATCAT-AACAATGTTAATAGCATGTATCAAGCACTTTGCTGAGTATTTTGCTTACATTAATACCCCATTATCAAATCAAACTCATAGGATATGCATGGTGCGCTATTGCATTGA---ACAAACAGATTCTTAGAGATGTAAAGTAACTTTCCAAAAGTATAGATATTTTAGATATA--------GACATTATAGACCTAGCAAATAAGAtgcagaaatataatttaaacttAGAACTGCC----TTAGTAATTACTATAACCAAAT-GTT--CTACTTCACATCCTGATTGTTGGAGACT---C--AACTCGAAATAGCCAGATCATATATAAGTAC----GTATCTGTACAGAGAAGTA----TATCTATTTCTAAAAGAGACTGC----------------------TACTTGTCAAATA----------------------------------------------TTCAGGCAAGTATGTG---TTTTGGCTGTGTGATGTGATAAGACCAGTTTTGAATCtcatattttaacaaaatgtgctgctta----tttttgttattttgcat---------------------------CAAGGAAACTTA-GTTTGTTCAGCCTGAAGAGTTTATG-----------ATGGCCTCCTGTA---TTCTTGTAATGTGTTCAAACTCTAGGgtaaaatcaattaaaaacacaaacccAGGATGTGTCCTTTTAAGCTTTCATATAGAATACCATGTAGATAA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19816663 1722 - 48547382 TAGTCAAAGttattattttatcattttcatcattatcattgtcatcattatca-taattatATGG-----tttatccagtactcaatatatagcagaaattgaggacttt-cctataccacattgaaccctccaaacaacactatacagcagctgttattttacctgttttatatgggaagtaaatgaagatcaaagagaatacattttttggtcaaagtcatattggttctaagtggttgaacctggattcaagctcaagtctgaccccagatttctttctcttaaGAATTACACGCTTCTACATTTGAGAAAAGGACATCAAGATTCACACAACCTTTCAAAATATTGTCATCCACAAGGTCACCTCAAGACTCAAGTACCACCTGGCAGCTTGAGCCATCTCTC-TAAGTTCTTAGTTCAGTTCGTTTATAATCCCCTCTGAGTA-----TTAGTTCTCCTCCTTCTCACTTCTTTAG-GTTTGTCACAGTCCTCTGAGATGACAGGCTGAGCAATGGTGATGAGAATTATGGTAATATAAATTCCACAAACAGAAGAGGCTGCCAGGAGTGGACACAAAGAGGTTCACAGAGGGCACATCTGGGTGAGAGCAGTCCCAGCTGTTATAGCATAT-GTGCAAAATACTGATATGCCTGCACATCCATGCAGACCTGATCCTAGCTGTTTATAAGAAAGGATAGTTAAACTCAGAAATGCAAATCTGTAGGCTGGAGTTGCTCTGTTTCCTAAGTCTTAAGAGTTTGGCTCTTTA-TCTTACACACATAAATGCAGTAGACAA-AACCTCCCCATAAATAAGCAGCAGGTGCACTAGTATTTTCTTGCCAAGGTATTATGCAAGTGTTAA-CCGAGCTGATCAGCAGAAGCACACATCCATCAGTTTTACTGC--AGAAAGCAGGAGGAAGAGGGTGAAGATGAGCAGGC-GGGTTAAATGAAAACTCATCTGGCTTGCAGAAGAGACACTTATTGCTCAGAGGAGGAAGGCGCCCAGGGGT-CATGAGATGTTATAGCACTAACAGAAAATCTAGAGTTTGC-AACTCTGATAAATGTTTAAGATTTAAT-GGGGAGTGTCCACACAAATGCAAAATG----AGAAAAAGGTAAGCGATCAT-AACAATGTTAATAACATGTATCAAGCACTTTGCTGAGTATTTTGCTTACATTAATACCCCATTATCAAATCAAACTCATAGGATATGCATGGTGTGCTATTGCATTT-------AACAGATTCTTAGAGATGTAAAGTAATTTTCCAAAAGTATAGATATTTTAGATATA--------GACATTATAGACCTAGCAAATAAGATGCAGAAATAGAATTTAAACTTAGAATTGCC----TTAGTAATTACTACAACCAAAT-GTT--CTACTTTACATCCTGATTGCTGGAGACT---C--CATTCGAAATAGCCAGATCATATATAAGTAC----GTATCTGTACACAGAAGTA----CATCTATTTCTAAAAGAGACTGC----------------------TACTTGTCAAATA----------------------------------------------TTCAGGCAAGTATGTG---TTTTGGCTGTGCCATGTGATAAGACCAGTTTTGAATCTCATATTTTAACAAAATGTGCTGCTTA----TTTTTGTTATTTTGCAT---------------------------CAAGGAAATTTA-GTTTGTTCAGCCTGAAGAGTTTATG-----------ATGGCCTCCTGTATTCTTCTTGTCATGTGTTCAAACTCTAGGGTAAAATCAATTAAAAACACAAACCCAGGATGTGCCCTTTTAAGCATTCATAAAGAATACCATGTAGATAA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21168668 1679 - 190850796 TAGTCAAAGTTATTATTTTATCATT------------ATTGTCATCATTATCA-CAATTGTATTa-----tttatccagtactcaatatatagcagaaattgaacacttt-cctatatcacattgaaccctgcaaccaacactatgaagcagccgttattttccctactttgcatgggaagtaaatgaagatcaaaatgaatacattttttggtcaaggtcatatgttttgtaagtggttgaacctggatttaaactcaagtctgactccagatttct-----ttaagcattacatgctTCTACATTTAAGAAAGGGACATCCAGACTCACACGTCTTTTTAAAATACTGTCATCCACAAGGTCACCTCAAGACTCAAGTACCACCTGGCAGCTTGAGCCATCTCTC-TAAGTTCTTAGTTCAGTTCATTTATAATCCCCTCTGAGTA-----TTACTTCTCCTCCTCCTCACTTCTTCAG-GTTTGTCACAGTCCTCTGAGATGACAGGCTGAGAGATGGTGATGAGAATCGTGGTAATATAAATTCCATAAACAGAAGAGGTTGCCAGGAGTGGACACAAAGAGGTTCACAGAGGGCACATCTGGGTGACAGCAGCTCCAGCTGTTGTAGCATAT-GTGCAAAATACTGGTGTGCCTGCACACCCATGCAGACCTGATCCTAGCTGTTTATAAGAAAGGA---TTAAACTTGGGAATGCAAATTTGTAGGCTGGAGTTGCTCTGTT-------TCTTAAGAGTTCAGCTCTTTA-TCTTACACACATAAATGCAGTAGACAA-AACCTCCACATAAATAAGCAGCAGGTGTACTAGTATTTTCTTGCCAACATATTATGCAAGTGTTAAGCTGAGCTGATCAGCAGAAGCACATATCCATCAGTTTCACTGC--AGAAAGCAGGAGGAGGAAGGTGAAGATAAGCAGGT-GGGTTAAATGAAAACTCATCTGGCTTGCAGAAGAGATACTTACTGCTCAGAGTGGGAAGGTGCCCAGGGGC-CATGAGATGTGACAGCACCAACAGAAAATCCAGAGCTTGAAAACTCTGATGAATGTTTAGGATTTAATGGGGGAATATCCACATAAATGC-AAATGATTTAGAAAAAGGTAAGTGATTAT-AACAATGTCAACAACATCTATCTAACACTCTGATGAGTATTTTGCTTACATTAATACCCTATTATCTAATCAAACTCACAGGATATGTGTGGTGCActatttcattga---agaaacagagtcttagagatgtaaaggaactttccaaaagtATAGATATTTGAGATATAGATG----GATATTATAGAACTAGCAAATAAGATGCAGAAATAGAATTTGAACTTGGAATTGCCTAAGTTAGTAATTACTATAAACAAAC-GCT--CTATTTCACATCCTAATTGTTGGGGATT---C--CATTTGAAATAGCCAGATCATGTACAAGCAT----GTATCTGTACACTGAAGTA----CATCTATTTCTAAAGGGGATTAC----------------------TACTTGTCAAATA----------------------------------------------TTCAGGCAAGTATGTG---TGTTGGCTGTGTGATGTGA------CAGTTTTGAATCTCCTATTTTAACAAAATG------------------------ATACAT---------------------------CAGGAAAAC-----TTTGTTCAGTCTGAAGAGCTTATG-----------ATGGTCTCCTGTATTTATCCTGTAATGTGTTCAAACTCTAGGGTAAAATACATTTAAAACACAAACCTGGGATTTGTCCTTTTAAACTATTATATAGGACATCATG----TAA i calJac3.chr3 C 0 C 0 s mm10.chr5 49149790 1755 + 151834684 TAAGCAAAATAATTGCTTGAACATCATCACAACCACCATCAACATCCTTATCAGTACTAACATTGGACTCTTTTATAAGCATTCCATATATGGCAGGAATCCAGTACGTT-ATTCTATCATGACAAACCCCACAAT-----CTCTGCATTGGATCTTTGCATCCTTGTTTTG----------------ACAACAGAGATGTTAAATTCTTGGATGGTGGCCATATTGGTTAGGCATATCACAGTGTATATTCAA----------------AAATTTCTTTTGTTTAATTACCATATTTTTTC---TCTGAGAATATT-CATCTATA-TCACATATTTTTTCAAGATAT--TTAT---TAAAGTCACTTCAAGCCTCAAGTTCCACTTGACAGCTTACATTATCTGTC-TAAATTCTTGGCTTGGATTATTTATAATCCCCTCCGTGTGATCTCTTTATTCTTCTCTTTCTCA---TTTTAT-ATTTGTGGCAGGGCTTAGAGGTGAGAAACTTAATGCTGGTGATGAGAAAT-TGAAAGTACATAGCTTCTAACCAGGAGGAGATGCTGGAAATGGACAAAAAGAA-TTCTCAGAGGATTCATCAGCATGAGAACAGACCCATCTGTAGTATTATAGAGTTAAAAATAAC-CTGTACCCAAGCAGTCACCGAGACCTGGTTGTAGTTGCTAAGAA-AATGGATCATTTACCTCAGAATTATAAACATAAAGGCTGTAACTGCTCATCTTCATAAGTGTTACTA-TTTGGCTCTTCACTCTTACATACAT-AACACAGTAGACAATAATGTGTATTTAAATGAGCAGCAGATGCATTCATATTCTCTTGCCAAGAAGTCATGCCAGTGTTAAGCTGAAGTGATGAGCCAAAGCTCACATCTGTGGGTTTCACTGCTAAGTGTGAAGGAGGAAGGGAGTG-----GAACAGACAAGGTCAAATAAAAGCCCATCTGCCTTGCCAAAGGGCCTGTTATTGCCTAGGGTTGGAAAGTGTTTAGGGGCATATGAGACATAATTACACAGAAAGAAAATTCAGAGTTTTG-AATTCTGCT--ATGTTTCACACTTGAT-GGAGAATATTCATATGGATATTAACTGATTTA-AAAAGTCTAAGCAATTGTAAAAAATGTTAATAGC---CACCCAGGAGTC--CCAAAGGCTTTGATTGTACCTGTTAGGCATTATCTCATCAAATACAAAGAACA-------------ATTTTGGTGG---AAAAACAG---------------AAATTGGTTCACAAACACATAACTTTTGTACAAATA-------------TATTGTTATATGAAATATAAAATAGAAAAGGGATCTAAATCTAGAATTGCCTA--TTACTAAT--ATATAAAATACT-GTTAAATATATGGCATCTTAATATCTCGATATT---TTATATCTGAAAAAGTCACATCTCATGAAAGGACTCCAATACATATATTTCTGAGGA----AACCTGATACTAAAGAAAAGCTCTGGAAAATGTAAATGAAGAAAATACCTAATaaataaaaaaagaaaaaaaaagaatatcagaaaaaaaaaaagaaagaaaaGCTCTGGAAAATACATGGATTTTTGTCTATGTAACATGACATGACCAGTTTAGTACTT--TTATTTACCAAGATTTGATGCCTA----TTTTAGTTAAATtatatatatatatatatatatatatatatatatatatatatatatatataCTTGGTATAAAATGTTTATA-----TTCACCATGCCCTATTATATCCATCCTGAAATGCATCCACAGTCTAGAGGAAAA-ATCTCATACACATAAACTCATAGCATAGCATTTCAGAGTTTCAGATAGAAT---GTATAGATAA i mm10.chr5 I 565 I 2500 s canFam3.chr3 3753003 1711 - 91889043 GAGTCAAATATATTATTACATCAT------------------CATCATCATCG-CTgctgtatta-----------------------tgtgccaggaattgagcactttccctacatcacatcattccctcccgataccgct-tagcgtaggtttcatgactcctattttatatagaaaggaagtgaagatgagagaacataaattatttggtcaaaggcatgctgattataggtggctgagcctggattccaacccaagtctgaccccaaatccctttccctaaagcactccactccattgTGTCTCAGAAA--GTCATCCAGACTCCCACATTCTTTCCAAATATCTTAGCCAGCAAGGTCACTCCAAGACTCAAGTACTGCCTGGCAGCTGGAGCCAGCCCTC-CACACGCTCAGCTCAGCTCATTGATAATCCCCTCCAAGTA-----TCACCTCTCTCTCTTCTCACTTTTTCAG---TTGTTCCAGTCCCCGGCGATGACAGG-TGAATGATGGGGATGGGGA-TGGGGTAATATAAAGCTCGCAAACAGGAGAGGGCACCAGCAGTGGGCAAGGAGAGGTTCACGGAGGATGCATCTGGGAGAGAGCAGCCCCAGCTGTTTGAACATAT-GTGCAAATTACCCGTGTGCCCGCACACCCATGCCGACCTGATCACAGTTGTTCAGAGGAAAGCACGATTAAGCTCAGAAATGCAAACATACGGGCTATCGTTGCTCT-TTTCCCAAGCCTTAATGGCTTGGCTCTTTA-TCCTACACATATCAACACAGTAGACAA-AGCCTCCAAATAAATAAGCAGCAGGTGCACTGGTATTCTCTTGCCAAGATATTATGCAAGCGTTAA--------ATCCAGCAGGAGCACACATCCGTCGGTTTCACTGC--AGAACGTGGGAGGAGGAAGGTAAGGTTGAGCAGGC-GGGTTAAATTAAAACTCATCTGGCTTTCAGAAGGGCCACCTATTGCCCAGAGTTGGAAGGTGCCCAGGGGCATAAGAGATGTAATTGCCCTGAAAGGAAATCCAGAGGTGGTGAACTCCGGGAA--GTTTAAGATGAAGT-GGGCAGTGCCCAGGCACATGCAGAATGATTTAGCAAAAGAGGAGCAATTGT-GATCATCTTCATAACTTCCgtccagcactgtgctgagtgccttgcttatatgaacacctgattatcacatcaaacttatagcatatgtaaggtgcacaattttactgatacggaaactgaatcttagagatataaggtaactttcctaaA----AGATGTTTTAGATACATATGGACAGATAGCACATATAAGGAAAACTAGATGCAGAAAAAGAATTGAATCTAA-----ACCTAAGTTAGAAATTCCTATAACAAAGCAGCC--ATATCTCACGTCTTGATTGTTAGAGATTTTCC--CACTAGAAATGGCTAGATTCCTTATAAACAC----ACACTTATGCCCTTAACCACCTCCATCTATTTCTAAAAGAGCCTGA----------------------TATTTGTCAAAAAAA--------------------------------------------ATCCAGCAAATATGCG---CGTAGGTGGTGC-ATATGCTATAACCA-CTTTGAGATTCTTATTTTAACAAAATCTGCTGCTTCTTCTTTTTTCTTTTTTTAGAT------------------------ACATAGCAAACCTCG-ATTTGTTCTGACTGAAGAGTTTAAAGTACATTTACTATGGCTTCTTTT-TTTACTTTGTAATGTAATCAAACTGTAGGGCGAAAGAAGTTTAAAGCACACACTCAGGGCACGCCGTTTTGAAAGTGTGCATGGGATATCATGTAGGTAA i canFam3.chr3 C 0 C 0 a score=837735.000000 s hg38.chr4_KI270790v1_alt 51082 288 + 220246 GCCAATAAAAACCACAAAACTCCCAATTTGGTCAAAAGGGACCTTACTGTATTAATATATGCATCCTAATTCATGCAGTCACTTAATTTCTCAtcatcttccttctaaacaccattccatgcacattttatatagcaacattgctgaaaaaaa-tgcatggatc--cacaaagatctctcatctttttttttttttttt-------gagacttgctttgccacccaggctggagtgctatggcatgacctcagctcactgcaacctctgcctcctgagttcaagtgattcttgtgcct s panTro4.chr4 21439332 296 + 193495092 GCCAATAAAAACCACAAAACTCCCAATTTGGTCAAAAGGGACCTTACTGTATTAATATATGCATCCTAATTCATGCAGTCACTTAATTTCTCATCATCTTCCTTCTAAACACCATTCCATGCACATTTTATATAGCAACATTGCTGAAAAAAAATGCATGGATC--CACAAAGATCTCTCATCtttttttttttttttttttttttgagactcgctttgccacccaggctggagtgctatggaatgacctcagctcactgcaacctctgcctcctgagttcaagtgattcttgtgcct i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21615117 290 + 198332218 GCCAATAAAAACCACAAAACTCCCAATTTGGTCAAAAGGGACCTTACGGTATTAATATATGCATCCTAATTCATGCATTCACTTAATTTCTCATCATCTTCCTTCTAAACATCATTCCATGCACATTTTATATAGCAACATTGATGGAAAAAAATGCATGGATC--CACAAAGATCTCTCATCtttttttttttttttt------tgagactcgctttgtcacccaggctggagtgccgtggcatgaactcagctcactgcaacctctgcctcctgagttcaagtgattcttgtgcct i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20226991 288 - 85365473 GCCAATAAAAACCACAAAACTCCCAATTTGGTCAAAAGGGACCTTACTGTATTAATATATGCATCCTAATTAATgcatttacttaatttctcatcatcttccttctaaacaccattccatgcacattttatatagcaacattgctgaaaaaaa-tgcatggatc--cacaaagatctctcatctttttttttttttttt-------gagactcgctttgtcacccaggctggagtgctgtggtatgacctcagctcactgcaacctctgcctcctgagttcaagtgattcgtgtgcct i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16693346 275 + 184069350 GCCAATAAAAACCACAAAACTCCCAATGGGGTCAAAAGGGACTTTACTGTATTAGTATATGCATCCTAATTCGTGCATTCACTTAGTTTCTCATCATCTTCCTTCTAAACACCATTCCATGCACATTTTATATAGCAACATTGCTGAAAAA---TGCATGGATC--CACACAGATCTCTCATCttttt------------------gagacttgctttgtcacccaggctggagtgctgtggcatgacctcagctcactgcaacctctgcctcctgatttcaagtgattgttgtgtct i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20735259 275 + 189454096 GCCAATAAAAACCACAAAACTCCCAATGGGGTCAAAAGGGACTTTACTGTATTAGTATATGCATCCTAATTCGTGCATTCACTTAGTTTCTCATCATCTTCCTTCTAAACACCATTCCATGCACATTTTATATAGCAACATTGCTGAAAAA---TGCATGGATC--CACACAGATCTCTCATCttttt------------------gagacttgctttgtcacccaggctggagtgctgtggcatgacctcagctcactgcaacctctgcctcctgatttcaagtgattgttgtgtct i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16331361 275 + 178775436 GCcaataaaaaccacaaaactcCCAATGGGGTCAAAAAGGACTTTACTGTATTAATTTTTGCATCCTATTTCGTGCATTCACTTAGTTTCTCATCATCTTCCTTGTAAACACCATTCCATGCACATTTTATATAGCAACATTGCTGAAAAA---TGCATGGATC--CACACAGATTTCTCATCttttt------------------gagacttgctttgtcacccaggctggagtgctgtggcatgacctcagctcactgcaacctctgcctcctgatttcaagtgattgttgtgcct i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19818385 275 - 48547382 GCCAATAAAAACTACAAAACTCCTAATGGGGTCAAAAGGGACTTTACTGTATTAATATATGCATCCTAATTCGTGCATTCACTTAGTTTCTCACCATCTTCCTTCTAAACACCGTTCCATGCACATTTTATATAGCAACATTGCTGAAAAA---TGCATGGATC--CACACAGATCTCTCATCTTTTT------------------gagacttgctttgtcacccaggctggagtgctgtggcatgacctcagctcactgcaacctctgcctcctgatttcaagtgattgttgtgtct i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21170347 287 - 190850796 GCCAATAAAAACCATAAAACTCCCAATCTGGTCAAAATGGACCTTACTGGATTAATGTATGCAT-CTAATTCATGGATTCACTTAATTTCTTATCATCTTCCTTCTAAACGCCACTCCATGTACATTTTATATAACAACGTTGCTGAAAAA---TGCATGGATCCACACACAGATCTAGCATCCttttttttttttttt-------gagacttgctttgtcacccaggctggagtgcagtgacatgatctctgctcactgaaacctccacctcctgagttcaagagattcttgtgcct i calJac3.chr3 C 0 C 0 s canFam3.chr3 3754714 171 - 91889043 ACCAATAAAACC-------------ATTCTGTCAAAATGAGTCCTACTGTCTCAATGTGTGCATCCTGATTCCGACCATCACTTCATTTCTTATCTTCTTCCTTTTAACC-----CCTGGGCCTATTTTATATAATAACAGTTTGGAAAGC---CGTATGGGTC--CCCTGGGATCTCTCATCCTTCT--------------------------------------------------------------------------------------------------------GTGCCT i canFam3.chr3 C 0 C 0 e mm10.chr5 49151545 2500 + 151834684 I a score=604852.000000 s hg38.chr4_KI270790v1_alt 51370 205 + 220246 cagctcccccaagtatctgggattacaggcatgtgccaccacacccagctaatttttgtatttttagtgaagatggggtttctccatgttggccagactgctctttaactcctgacctcaggtgatccactggcctctggctcccaaagtgctgggattataggcgtgagccattccacctggtctcatccttcttttcttgcct s panTro4.chr4 21439628 205 + 193495092 cagctcccccaagtatctgggattacaggcatgtgccaccacacccagctaatttttgtatttttagtgaagatggggtttctccatgttggccagactgctctttaactcctgacctcaggtgatccaccggcctctggctcccaaagtgctgggattataggcatgagccattccacctggtcTCATCCTTCTTTTCTTGCCT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21615407 205 + 198332218 cagctcccccaagtatctgggattacaggcatgtgtcaccacacccagctaatttttgtatttttagtgaagatggggtttctccatgttggccagactgctctttaactcctgacctcaggtgatctacctgcctctggctctcaaagtgctggaattacaggcgtgagccattccacctggtcTCATCCTTCTTTTCTTGCCT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20227279 205 - 85365473 cagctcccccaagtatctgggattacaggcatgtgccaccacacccagctaatttttgtatttttagtgaagatggggtttctccatgttggccagactgctctttaactcctgacctcaggtgatccacctgcctctggctcccaaattgctgggattacaggcgtgagccattccacctggtctcatccttcttttcttgcct i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16693621 204 + 184069350 cagctcccccaagtagctgggattacaggcatgtgccaccacacccagctaatttttgtatttttagtgaagacagggtttctccatattggccaggctgctctttaactcctgacctcaggtgatccacctgcctctggctcccaaagtgctgggattacagatgttagccgctgcacccggtcTCATCCTTCTTTTCTTGCC- i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20735534 204 + 189454096 cagctcccccaagtagctgggattacaggcatgtgccaccacacccagctaatttttgtatttttagtgaagacagggtttctccatattggccaggctgctctttaactcctgacctcaggtgatccacctgcctctggctcccaaagtgctgggattacagatgttagccactgcacccggtcTCATCCTTCTTTTCTTGCC- i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16331636 204 + 178775436 cagctcccccaagtagctgggattacaggcatgtgccaccacacccagctaatttttgtatttttagtgaagacagggtttctccatgttggccaggctgctctttaactcctgacctcaggtgatccacctgcctctggctcccaaagtgctgggattacagatgttagccactgcacctggtctcatCCTTCTTATCTTGCC- i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19818660 204 - 48547382 cagctcccccaagtagctgggattacaggcatgtgccaccacacccagctaatttttgtatttttagtgaagacagggtttctccatgttggtcaggctgctctttaactcctgacctcaggtgatccacctgcctctggctcccaaagtgctgggattacagatgttagccactgcacccggtcTCATCCTTCTTTTCTTGCC- i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21170634 202 - 190850796 cagctccctcaagtagctgacattacaggcttacgccaccacaccctgctaatttttgtatttttagtacagatggactttcacgatgt---ccaggctgctcttgaactcctgacctcaggtaatccgccctcctcagcctcccaaagtgctgggattacagctgtgagccaccatgcctggtcTCATCCTTCTTTCCTTGTCT i calJac3.chr3 C 0 C 0 e mm10.chr5 49151545 2500 + 151834684 I e canFam3.chr3 3754885 0 - 91889043 C a score=631394.000000 s hg38.chr4_KI270790v1_alt 51575 204 + 220246 ttgtggattctgttctctcatgatcttttccctatctcttagttgtactacaagattcagtt---tggtcttcatcttttcagcaaactttccttgacTTA-------GGTATTAGTGTCCATCTCAGCTATT-CAGAATCATCCCAGGCATGTTATTATTATCACCACTGTTTAGTGGTAAACAGTGGGAATGGTCATAGCATTAGCGGTAGTA s panTro4.chr4 21439833 204 + 193495092 TTGTGGATTCTGTTCTCTCATGATCTTTTCCCTATCTCTTAGTTGTACTACAAGATTCAGTT---TGGTCTTCATCTTTTCAGCAAACTTTCCTTGACTTA-------GGTATTAGTGTCCATCTCAGCTATT-CAGAAGCATCCCAGGCATGTTATTATTAACACCACTGTTTAGCGGTAAACagtgggaatggtcatagcattagcggtagta i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21615612 204 + 198332218 TTGCGGATTCTGTTCTCTCATGATCTTTTCCCTTTGTCTTAGTTGCACTACAAGATTCAGTT---TGGTCTTCATCTTTTCAGCAAACTTTCCTTGACTTA-------GGTATTAGTGTCCATCTCAGCTATT-CAGAAGCATCCCAGGCATGTTATTATTATGACCACTGTTTAGCGGTAAACTgtaggaatggtcatagcgttagcagtagta i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20227484 204 - 85365473 ttgcggattctgttctctcatgatcttttccctgcctcttagttgtactacaagattcagtt---tggtcttcatcttttcagcaaactttccttgacTTA-------GGTATTAGTGTCCATCTCAGCTATT-CAGAAGCATCCCAGGCATGTTATTATTATCACCACTGTTTAGCGGTAAACAGTAGGAATGGTCATAGTGTTAGCAGTAATA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16693825 203 + 184069350 TTGTGGATTCTGTTCTCTTATGATA-TTTCCCTATCTCCTAGTTGTACTGCAAGATTCAGTT---TGGTCTTCATCTCTTCAGCAAACTTACCTTGTCTCA-------GGTATTAGTGTCCATTTCAGCTATT-CAGAAGCATCCCGGGCATGTTACTATTATCACTACTGTTTAGCAGTGAACAGTAGGAATGGTCATAGTGTTAGCAGCAATA i rheMac3.chr5 C 0 I 342 s macFas5.chr5 20735738 203 + 189454096 TTGTGGATTCTGTTCTCTTATGATA-TTTCCCTATCTCCTAGTTGTACTGCAAGATTCAGTT---TGGTCTTCATCTCTTCAGCAAACTTACCTTGTCTCA-------GGTATTAGTGTCCATTTCAGCTATT-CAGAAGCATCCCGGGCATGTTACTATTATCACTACTGTTTAGCAGTGAACAGTAGGAATGGTCATAGTGTTAGCAGCAATA i macFas5.chr5 C 0 I 9 s papAnu2.chr5 16331840 203 + 178775436 TTGTGGATTCTGTTCTCTTATGATA-TTTCCCTATCTCCTAGTTGTACTGCAAGATTCAGTT---TGGTCTTCATCTTTTCATCAAACTTACCTTGTCTTA-------GGTATTAGTGTCCATTTCAGCTATT-CAGAAGCATCCCAGGCATGTTACTATTATCACTACTGTTTAGCGGTGAACAGTAGGAATGGTCATAATGTTAGCAGCAATA i papAnu2.chr5 C 0 I 9 s chlSab2.chr27 19818864 206 - 48547382 TTGTGGATTCTGTTCTCTTATGATA-TTTCCCTATCTCCTAGTTGTACTGCAAGATTCAGTTTGGTGGTCTTCATCTTTTCAGCAAACTTACCTTATCTTA-------GGTATTAGTGTCCATTTCAGCTATT-CAGAAGCATCCCGGGCATGTTACTATTATCACTACTGTTTAGCGGTGAACAGTAGGAATGGTCATAGTGTTAGCAGCAGTA i chlSab2.chr27 C 0 I 23 s calJac3.chr3 21170836 203 - 190850796 TTGCACTTTCTGTTATCTCATGATCTTTTCCCTATCTCCTAATTGGACTGC-AGATTCAGTT---TGGTCTTCATCTTTTCGGCAAACTTTCCTTGGTTTA-------AATATTAGTGTCCATCTCAGCGATTCCAAGGGCATCACGGGCAGGTTATTATTATCGCCACTGCTTAGTGGTG-ACAGAAGGGATGGTCATAGTGTTAGCAGTAGTA i calJac3.chr3 C 0 C 0 s canFam3.chr3 3754885 210 - 91889043 TTGTGTATTCCATTCTCTTATTACTTTTTCCCTACTTCCTTGTTGGACTCC-ACATTCAGTT---TGATCCTCATCTCTTCAGCAAACCTTCTCTGCCTTCTCCAATTGGGTTAGGCATCCATTTCCGATGTCCCAAGAGCATCCCGGACAAGTTAGTATTTCCAGGACTGCATAGCTGTA-ACAATAATGGTGGTGGTACTAGGAACAGCAGGA i canFam3.chr3 C 0 C 0 e mm10.chr5 49151545 2500 + 151834684 I a score=10163.000000 s hg38.chr4_KI270790v1_alt 51779 10 + 220246 GCATTAGTAG s panTro4.chr4 21440037 10 + 193495092 gcattagtag i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21615816 10 + 198332218 gcattagtag i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20227688 8 - 85365473 GAATTAGT-- i nomLeu3.chr20 C 0 C 0 s macFas5.chr5 20735950 10 + 189454096 GCAGTGGAAG i macFas5.chr5 I 9 I 4 s papAnu2.chr5 16332052 10 + 178775436 GCAGTGGAAG i papAnu2.chr5 I 9 I 4 s calJac3.chr3 21171039 10 - 190850796 GCATTACCAG i calJac3.chr3 C 0 C 0 s canFam3.chr3 3755095 10 - 91889043 GCGTTAATAG i canFam3.chr3 C 0 C 0 e mm10.chr5 49151545 2500 + 151834684 I e chlSab2.chr27 19819070 23 - 48547382 I e rheMac3.chr5 16694028 342 + 184069350 I a score=-2150.000000 s hg38.chr4_KI270790v1_alt 51789 7 + 220246 ---CAGCAAC s panTro4.chr4 21440047 7 + 193495092 ---cagcaac i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21615826 7 + 198332218 ---cagcaac i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20227696 6 - 85365473 ----AGCAAC i nomLeu3.chr20 C 0 C 0 s macFas5.chr5 20735964 4 + 189454096 ---CAGC--- i macFas5.chr5 I 4 C 0 s papAnu2.chr5 16332066 4 + 178775436 ---CAGC--- i papAnu2.chr5 I 4 C 0 s chlSab2.chr27 19819093 4 - 48547382 ---CAGC--- i chlSab2.chr27 I 23 C 0 s calJac3.chr3 21171049 7 - 190850796 ---CAGCAGG i calJac3.chr3 C 0 C 0 s canFam3.chr3 3755105 7 - 91889043 TGAAACC--- i canFam3.chr3 C 0 C 0 e mm10.chr5 49151545 2500 + 151834684 I e rheMac3.chr5 16694028 342 + 184069350 I a score=1726046.000000 s hg38.chr4_KI270790v1_alt 51796 540 + 220246 AATAATGGA-----------AGAGGTAGTGATACTCATACTTGACCttag----tgagtatctccaatatgtcaggcacagtaccaggaactttaaatgtatgaactctaatccactaaaactacatgaatcagcatgaatttattatccccactttat-gactgagggaaactgagT----------TTCTCTTTTATCAGTGGCTGTTTCTCC----------CTAATTTTCTGTTTTCATGCTCCCCATTTTTCTCTCTTAAGCACCTTAGATAT-------TTCTTTATTTATCTTGTATTTGT----------------------------------------GTtctattgtttctcagatttctaaatcattgatttctagttttacccttattaattctgttctc----gtt-ccttggga-tttattttt-----tttcttttctaacagtttgaacctaattgcttaattcacttaaattttcccattttattaattcatctatgtaaggccagtaattttcctctgagcaataccttagctgtgttcTCTAGTACCTAAATTTATATTTTATCTATTCTGAGACACAACTTTTTAAGGTCATTTCAACTTATGACA-----------------------------------------------------------------------TATTTTA s panTro4.chr4 21440054 529 + 193495092 aataatgga-----------agaggtagtgataCTCATACTTGACCttag----tgagtatctccaatatgtcagg------------aactttaaatgtatgaactctaatccactaaaactacatgaatcagcatgaatttattatccccactttat-gactgagggaaactgagt----------ttcTCTTTTATCAGTGGCTGTTTCTCC----------CTAATTTTCTGTTTTCATGCTCCCCATTTTTCTCTCTTAAGCACCTTAGATAT-------TTCTTTCTTTATCTTGTATTTGT----------------------------------------ATtctattgtttctcagatttctaaatcattgattactagttttacccttattaattctgttctc----ctttccttggga-tttattttt-----tttcttttctaacaatttgaacctaattgcttaattcacttaaattttcccattttattaattcatctatgtaaggccagtaattttcctctgagcaataccttagctgtgttcTCTAGTACCTAAATTTATATTTTATCTATTCTGAGACACAACTTTTTAAGGTCATTTCAACTTATGACA-----------------------------------------------------------------------TATTTTA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21615833 542 + 198332218 aataatgga-----------agaggtagtgataCTCATACTTGACCttag----tgagtatctccaatatgtcaggcacggtaccgggaactttaaatgtatgaactctaatccactaaaactacatgaatcagcatgaatttattatccccactttat-gactgagggaaactgagT----------TTCTCTTTTATCAGCGGCTGTTTCTCC----------CCAATTTTCTGTTTTCATGCTCCCCATTTTTCTCTCTTAAGCACCTTAGATAT-------TTCTTTATTTATCTTGTATTTGT----------------------------------------GTtctattgtttctcagatttctaaatcattgatttcgagttttacccttattaattctgttctc----ctttccttgggattttattttt-----tttcttttctaacagtttgaacataattgctcaattcacttaaattttcccattttattaattcatctatgtaaggccagtaattttcctctgagcaataccttagctgtgttcTCTAGTACCTAAATTTATATTTTATCTATTCTGAGACACGACTTTTTAAGGTCATTTCAACTTATAACA-----------------------------------------------------------------------TATTTTA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20227702 536 - 85365473 AATAATGGA-----------AGAGGTAGTGATACTCATATTTGACCttag----tgagtatctccaatatgtcaggcacagtaccgggaactttaaatgtatgaactctaatccactaaaactacatgaattagcatgaatttattatccccattttat-gactgagggaaactgagt----------ttcTCTTTTATTAGCAGCTGTTTCTCC----------CTAATTTTCTGTCTTCATGCTCCCCATTTTTCTCTCTTAAGCACCTTAGATAT-------TTCTTTATTTATCTTGTATTTGT----------------------------------------GTtctattgtttctcagatttctaaatcattgatttctagttttaccgtt----attcttttctc----ctttccttggga-tttattttt-----cttcttttctgacagtttgaacctaattgcttaattcacttaaattttcccattttagtaattcatctatgtaaggccagtaattttcctctgagcaataccttagctgtgttcTCTAGCACCTAAATTTATATTTTATCTATTCTGAGACACAACTTTTTTAGGTCATTTCAACTTATGACA-----------------------------------------------------------------------TA-TTTA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16694370 540 + 184069350 AATAATGGA-----------AGAGGTAGTGACACTCATACTTGACCttag----tgagtatctccaatatgtcaggcacagtactggaagctttaaatgtatgaactctaatccactaaaactacatgaattagcatgaatttattatccccactttat-gactgagggaaactgagT----------TTCTCTTTTATCAGTGGCTGTTTCTCC----------CTAATTTTCTGTTTTCATGCTCCCCATTTTTCTCCCTTAAGCACCTTAGATAT-------TTCTTTATTTTTCTTGTATTTAT----------------------------------------GTtctattgtttctcagatttctaaatcatttatttctagttttatccttgttaaatctgttctc----ctttccttggga-tttattttt------ttcttttctaacagtttgaacctagttgcttaattcacttaaattttcccattttattaattcatctatataaggccagtaattttcctctgagcaataccttagctgtgttcTCTAGTACCTAAATTTATATTTTATCTATTCTGAAACACAACTTTTTTAGGTCATTTCAACTTATGACA-----------------------------------------------------------------------TATTTTA i rheMac3.chr5 I 342 C 0 s macFas5.chr5 20735968 540 + 189454096 AATAATGGA-----------AGAGGTAGTGACACTCATACTTGACCttag----tgagtatctccaatatgtcaggcacagtactggaagctttaaatgtatgaactctaatccactaaaactacatgaattagcatgaatttattatccccactttat-gactgagggaaactgagT----------TTCTCTTTTATCAGTGGCTGTTTCTCC----------CTAATTTTCTGTTTTCATGCTCCCCATTTTTCTCCCTTAAGCACCTTAGATAT-------TTCTTTATTTTTCTTGTATTTAT----------------------------------------GTtctattgtttctcagatttctaaatcattgatttctagttttacccttattaaatctgttctc----ctttccttggga-tttattttt------ttcttttctaacagtttgaacctagttgcttaattcacttaaattttcccattttattaattcatctatataaggccagtaattttcctctgagcaataccttagctgtgttcTCTAGTACCTAAATTTATATTTTATCTATTCTGAAACACAACTTTTTTAGGTCATTTCAACTTATGACA-----------------------------------------------------------------------TATTTTA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16332070 540 + 178775436 AATAATGGA-----------AGAGGTAGTGACACTCATACTTGACCTTAG----TGAGTATCTCCAATATGTCAGGCACAGTACTGGAAGCTTTAAATGTATGAACTCTAATCCACTAAAACTACATGAATTAGCATGAatttattatccccactttat-gaCTGAGGGAAACTGAGT----------TTCTCTTTTATCAGTGGCTGTTTTTcc----------ctaattttctgttttcatgctcCCCATTTTTCTCCCTTAAGCACcttagatat-------ttctttatttttcttgtatttat----------------------------------------gtTCTATTGTTTCTCAGATTTCTAAatcattgatttctagttttaccCTTATTAAATCTGCTCTC----CTTTCcttggga-tttattttt------ttcttttctaacagttTGAACCTAGTTGCTTAATTCACttaaattttcccattttattaattcatctaTATAAGGCCAGTAATTTTCCTCCGAGAAATACCTTAGCTGTGTTCTCTAGtacctaaatttatattttatctattctGAAACACAACTTTTTTAGGTCATTTCAACTTATGACA-----------------------------------------------------------------------TATTTTA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19819097 540 - 48547382 AATAATGGA-----------AGAGGTAGTGACACTCACACTTGACCttag----tgagtatctccaatatgtcaggcacagtactggaagctttaaatgtatgaactctaatgcactaaaactacataaattagcatgaatttattatccccactttat-gactgagggaaactgagT----------TTCTCTTTTATCAGTGGCTGTTTCTCC----------CTAATTTTCTGTTTTCATGCTCCCCATTTTTCTCCCTTAAGCACTTTAGATAT-------TTCtttgtttttcttgtatttat----------------------------------------gttctattgtttctcagatttctaaatcattgatttctagttttacccttattaaatctgttctc----ctttccttggga-tttggtttt------ttcttttctaacagtttgaacctagttgcttaattcacttaaattttcccattttattaattcatctatataaggccagtaattttcctctgagcaataccttagctgtgttcTCTAGTACCTAAATTTATATTTTATCTATTCTGAGACACAACTTTTTTAGGTCATTTCAACTTATGACA-----------------------------------------------------------------------TATTTTA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21171056 546 - 190850796 AATAGTGGA-----------AGAGGTCGTGATACTCATACTCGACCttgc----tgagtatctccagtatgccaggtacagcactgggagctttaattatgtgaactctaatccactaaaactacataaattagcatgaatttattatcctcac-ttac-aactgaggaaaactgagTTTCTCTTAGCTTCTCTTCTATCAGTGGCTGTTTCTCCCATAACATTTCTCATTTTCTGTCTTCATGCT-CCCATTTTTCTTCCTTAAACACCTTAGAAAT-------TTCTTTATCTTTT-----ATTAT----------------------------------------GTtctatcatttttcagttttctaaatcactgatttctagttttcccattattaattctgttc-------tttccgtgtga-tttattctt---------tcttctaacagtttgaacctagttgcttaattcatttaaattttcccattttattaattcatccatgtaaggctattaattttcctctgagcaataccttagctgtgtcTTCTAGTACATAAATTTGTATTTTATCTATTCTGAGACACAA-TTTTTTAGGTCATTTCAACTTATGACA-----------------------------------------------------------------------CATTTTA i calJac3.chr3 C 0 C 0 s canFam3.chr3 3755112 691 - 91889043 AGCACTGAACTCACACCACCAGCAGCAATGGCAATTG---------TTGGGAGttgaatgccttctgcgtgccaggcacaggaccaggagccttaaccatattagctctaatccatttaagtcctatgcattggcatgaattaattatccccacttcacaaattgagggaaACCTAATtccttttcatttcccctttatcagtagctatctctcccttatcacttctgattttccaccttcatgctgccctctacact-tcttaggtaatttaactatatattcatattttatattttttatatttatctatattttcccccaaagaattggtttttggtacttgtcagttctactacttttctgatttctaaatcattgatttatgttttttcttctattaaattgcatcccacttctttccttagtt-tttttttttcttttttttttttgtaacagattgagtttagaggcttaattcatttgattttttgcatgttattaatgtgaatacttaagcctcataacttccct-ggagcagtgcc-taactggatcccataCTATCTAAATCTGTATTTCATCAATTCTGAGACAC-ATTCTTTTAGGTTATTTCAACTTGTAACACTTCTTTGAAGATTTCACTTAAAtatttatttgtgtgtttgtttgtttatttatttatttatttatttatttatttta i canFam3.chr3 C 0 I 192 e mm10.chr5 49151545 2500 + 151834684 I a score=2250445.000000 s hg38.chr4_KI270790v1_alt 52336 727 + 220246 GAATTAAGAGATATCTTCATCTAGGGGTGAATGATATGCA--TGTTAGTACACTACGCTCCATTTTGATCAATT----------TCCAATGATTATCAGCCAGGTTACAGTCCTGACATAGCTGATAACTAATGTTGGAAACTGGATAGACT--GGGACATTGTTCCTGTTGGC---------------TTATGTGCCTTATTGATGCTG-AAAAGCTAAGTTTAGTTACTGTTTCAAATACCTTTATTttgttgatctaaaatattctatgaacactttcca--------------------agaagat-------------ctacctttaaaaatttcaaaatgggtgtcaacggcttggaag-agaatttgggagataatagtggagcactctcccaactcaggctgcaatactaatgcacttagtgtcacagtaggaGaaaaattc-taacgactgtaacagagttgagtcatggtttatgggcagaaattttcttgttaatgaacacaagagaaccatgcatcttacaaatggtggtgtcttagattaataaaaAAATTAATATTTGTTTTCTGTAAGTTTATCGTGTACCTGAAATTTACAAtttcattttcattttcattttgacctatgggcctttgagca--ag-----ttttcaaaatctccaggtgaaactggcgtttttcttttcag-tttgtttttaatttccagctttcttgtatagagatcaaagagagtgt--tcta---tatttatatatttaaataatttattgaggtttttgtg---------------gccttaatatat s panTro4.chr4 21440583 727 + 193495092 GAATTAAGAGATATCTTCATCTAGGGGTGAATGATATGCA--TGTTAGTACACTACGCTCCATTTTGATCAATT----------TCCAATGATTATCGGCCAGGTTACAGTCCTGACATAGCTGATAACTAATGTTGGAAACTGGATAGACT--GGGACATTTTTCCTGTTGGC---------------TTATGTGCCTTATTGATGCTG-AAAAGCTAAGTTTAGTTACTGTTTCAAATACCTTTATTttgttgatctaaaatattctatggacactttcca--------------------agaagat-------------ctacctttaaaaatttcaaaatgggtgtcaacggcttggaag-agaattcgggagataatagtggagcgctctcccaactcaggctgcaatactaatgcacttagtgtcacagtaggaGaaaaattc-taacaactgtaacagagttgagtcatggtttatgggcagaaattttcttgttaatgaacacaggagaaccatgcatcttacaaacggtggcgtcttagattaataaaaAAATTAATATTTGTTTTCTGTAAGTTTATCGTGTACCTGAAATTTACAAtttcattttcattttcattttgacctatgggcctttgagca--ag-----ttttcaaaatctccaggtgaaactggcgtttttcttttcag-tttgtttttaatttccagctttcttgtatagagatcaaagagagtgt--tcta---tatttatatatttaaataatttattgaggtttttgtg---------------gccttaatatat i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21616375 724 + 198332218 GAATTAAGAGATACCTTCATCTAGGGGTGAATGATATGCA--TGTTAGTACACTAAGCTCCATTTTGACCAATT----------TCCAATGATTATCAGCCAGGTTACAGTCCTGACATAGCTGATAACTAATGTTGGAAACTGGATAGACT--AGGACATTGTTCCTGTTGGC---------------TTATGTGCCTTATTGATGCTG-AAGAGCTAAGTTTAGTTA--GTTTCAAATACCTTTATTttgttgatctaaaatattctatgaacactttcca--------------------agaagat-------------ctacctttaaaactttcaaaatgggtgtcaacggcttggaag-aaaattcgggagataatagtggagcactctcccaagtcaggctgcattactaatgcacttagtgtcgcagtaggaGaaaaattc-taacgactgtaacagagttgagtcatggtttacgggcagaaattttcttcttaatgaacataggagaaccatgcatcttacaaatggtggtgtcttagattaat-aaaaAATTAATATTTGTTTTCTGTAAGTTTATCGTGTACCTGAAATTTACAAtttcattttcatttccattttgacctatgggcctttgagaa--ag-----tttttgaaatctccaggtgaaactggcctttttcttttcag-tttgtttttaatttccagctttcttgtatagagatcaaagagagtgt--tcta---tatttatatatttaaataatttattgaagtttttgtg---------------gccttaatatat i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20228238 725 - 85365473 AAATTAAGAGATACCTTCACCTAGGGGTGAATGATATGCA--TGTTAGTACACTAAGCTCCATTTTGATCAATt----------tccaatgattatcagccaggttacagtcctgacatagctgataactaatgttggaaactggatagact--gggacgttgttcctgttggc---------------ttatgtgcattattgatgctg-aagagctaagtttagttactgtttcaaatacctttaTTttattgatctaaaatattctacgaacactttcca--------------------agaagat-------------ctacctttaaaactttcaaaatgagtgtcaacggcttggaag-aaaatttgggagctaatagtggagcactctcccaagtcaggctgcattactaatgcacttagtgtcacagtaggagaaaaattc-taacgactgtaacagagttgagtcatggtttatgggcagaaattttcttcttaatgaacacaggagaaccatgaatcttacaaatggtggtgtcttagattaat-aaaaAATTCATATTTGTTTTCTGTAAGTTTATCGTGTATCTGAAATTTACAAtttcattttcatttccattttgacctatgggcctttgagaa--ag-----ttttcgaaatctccaggtgaaactatcctttttcttttcag-ttggtttttaatttccagctttcttgtatagagatcaaagagagtgt--tctg---tatttatatatttaaataatttattgaggtttttgtg---------------g-cttaatatat i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16694910 736 + 184069350 GAATTAAGATATACCTTCGTCTAGGGGTGAATGATATGCA--TGTTAGTCGACTAAGCTCCATTTTGATCAATT----------CCcaatgattatcagtcaggttacagtcccgacatagctgataactaatgttggaaactggatagact--gggacattgttcctgttggcatcatttcagttgagttatgcacatgattgatgctg-aagagc-----ttagttactatttcaaatacctttaTTTTGTTGATCTAAAATATTCTGTGAGCATTTTCCANNNNNNNNNNNNNNNNNNNN------------------------------aactttcaaaatgggtgtcaatggcttggaag-aaaattctggagataacagtggagcactctcccaagtaaggctgcattactaatgcact---tgtcacagtaggaGaaaaattc-taaggactataacagagttgagtcatggtttatgggcagaaattttcttcttaatgaacacaggagaaccatgcatcttacaaatgttggtgtcttacattaat--aaaaATTGATATTTATTTTCTGTAAGTTTATCATGTACCTGAAATTTACAATTTCATTTTCATTTCCATTTTGACCTATGGGCCTTTGAGAA--AG-----TTTTTTAAATCTCCAGGTGAAACTGGCCTTTTACTTTTCAGTTTTGTTTTTAATTTCCAGGTTTCATGGATAGAGATCAAAGAGAGTAT--TCta---tatttatatatttaaataatttattGAAGTTTTTGTG---------------ACCTTAATATAT i rheMac3.chr5 C 0 M 188 s macFas5.chr5 20736508 733 + 189454096 GAATTAAGATATACCTTCGTCTAGGGGTGAATGATATGCA--TGTTAGTCGACTAAGCTCCATTTTGATCAATT----------CCcaatgattatcagtcaggttacagtcccgacatagctgataactaatgttggaaactggatagact--gggacattgttcctgttggcatcatttcagttgagttatgcacatgattgatgctg-aagagc-----ttagttactatttcaaatacctttaTTttgttgatctaaaatattctgtgagcattttcca--------------------agaagat-------------ctaccattaaaactttcaaaatgggtgtcaatggcttggaag-aaaattctggagataacagtggagcactctcccaagtaaggctgcattactaatgcact---tgtcacagtaggaGaaaaattc-taaggactgtaacagagttgagtcatggtttatgggcagaaattttcttcttaatgaacacaggagaaccatgcatcttacaaatgttggtgtcttacattaat--aaaaATTGATATTTATTTTCTGTAAGTttatcatgtacctgaaatttacaatttcattttcatttccattttgacctatgggcctttgagaa--ag-----ttttttaaatctccaggtgaaactggccttttacttttcagttttgtttttaatttccaggtttcatggatagagatcaaagagagtat--tcta---tatttatatatttaaataatttattgaagtttttgtg---------------accttaatatat i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16332610 732 + 178775436 GAATTAAGATATACCTTCGTCTAGGGGTGAATGATATGCA--TGTTAGTCGACTAAGCTCCATTTTGATCAATT----------CCCAATGATTATCAGTCAGGTTACAGTCCCGACATAGCTGATAACTAATGTTGGAAACTGGATAGACT--GGGACATTGTTCCTGTTGGCATCATTTCAGTTGAGTTATGCACATGATTGATGCTG-AAGAGC-----TTAGTTACTATTTCAAATacctttattttgttgatctaAAATATTCTGTGAGCATTTTCCA--------------------AGAAGAT-------------CTACCATTAAAACTTTCAAAATGGGTGTCAATGGCTTGGAAG-AAAATTCTGGAGATAACAGTGGAGCACTCTCCCAAGTAAGGCTGCATTACTAATGCACT---TGTCACAGTAGGAGAAAAATTC-TAAGGACTGTAACAGAGTTGAGTCATGATTTATGGGcagaaattttcttcttaatgaaCACAGGAGAACCATGCATCTTACAAATGTTGGTGTcttacattaat--aaaaattgataatt-ttttttgtaagtttatcATGTACCTGAAAtttacaatttcattttcatttccattttgacCTATGGGCCTTTGAGAA--AG-----ttttttaaatctccaggtgaaactggccttttacttttcagttttgtttttaatttccaggtttCATGGATAGAGATCAAAGAGAgtat--tcta---tatttatatatttaaataatttattgaagtTTTTGTG---------------ACCTTAATATAT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19819637 712 - 48547382 GAATTAAGATATACCTTCGTCTAGGGGTGAATGATATGCA--TGTTAGTCGACTAAACTCCATTTTGATCAATT----------CCcaatgattatcagtcaggttacagtcccgacatagctgataactaatgttggaaactggatggact--gggacatggttcctgttggcatcatttcagttgagttatgcacatgattgatgctg-aagagc-----ttagttactgtttcaaatacctttaTTttgttgatctaaaatattctgtgagcattttcca--------------------agaagat-------------ctaccattaaaactttcaaaacgggtgtcaatggcttggaagaaaaattctggagataacagcggagccccctcccaagtaaggctgcattactaatgcact---tgtcacagtaggagaaaaattc-taaggactgtaacagagttgagtcatggtttacgggcagaaattttcttcttaatgaacacaggagaaccatgcatcttacaaatgttggtgtcttaCACTAAT--AAAAATTGATATTTACTTTCTGTAAGTTTACCATGTACCTGAAATTTACAATTTCATTTTCATTTCCATTTTGACCTATAGGCCTTTGAGAA--AG-----TTTTTTTAATCTCCAGGTGAAACTGGCCttttacttttcagttttgtttttaatttccaggtttcaTGGATAGAGATCAAAGAGAGTAT--TCTA---TATTTATATATTTAAATAATTTATTGA------------------------------------- i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21171602 746 - 190850796 GAATTAAGAGATATCTTCATCTAGGGGTGAATGGTATACA--TGCTAGTACACTAAGCTCCATTATGATCCATGGAGCTGATAATCcaatgattatcagcaaggttacagtcccaacacagctgataactaatgctgggaactgtatagact--gggacactgctcctgttggcattatttcagttgagttatgtgcattattgatgctg-aagaactaagttcagttactgtttcaaaaacctttaTTTTGTTGATCTAATATGATCTATGAACACTTTCca--------------------agaagat-------------ctaccattaaaactttcaaaatgtgtgtcaatggcttgcaag-aaaattctggagataatagtggagcactttcccaagtaaggctgtgttactaatgcacttaatgtcatagtaggaGaaacattc-taaagactataacagagttgagtcatggttaattggcagaaattttcttcttaatgaacacaggagacc-----atcttacaaatggtggtgtcttgggttaataaaaACAAAAATATTTGttt----caagtttatcacatacttgaaatttacaatttcattttcatttccattttgacctatgggtgtttgagaaagag-----tgttttaaatcttcaggtgaaattggctttttacttttcagttttgtttgcaatttccagctttcttgtatagggatcaaagagagtat--tcta---tgtttatatatttaaataatatattgaggtttttgtg---------------gcttcaatatat i calJac3.chr3 C 0 C 0 s canFam3.chr3 3755995 758 - 91889043 GAATCAAAAGATGCCTTCATCAAAGGGTGAAC-ATACGCATCTATGAATATGCTAAGCTCCATTTTGATCAGAT----------CCCAGTGGTTATCGGCCAGGCTAGAGTCCCGACCTAGCTA-----CCCTGTAGAGGCCTGCACAGACTCAGGTGTGTTGTTCCTCCTGGTAACCCTCCAGTTGAGTTACATGCACTAGTGATATGGTAAGAGC-------------TGTTTCGAATACTTTCATTTTGTCAATCAAAAATATTGTATAAACAATTT-TA--------------------AGACAATcatgaaagcactactatcatcaacactttccaaatgggtgtcagtgacttgaaag-aaaattctagagataacagtggaccactgcctgaagtaatgccccatctctaatgcacacagtggcacaggagaagaAAAACTCAAAAGGAATAAAACAGAGTGGAGGCATAGCTTACTGGCAGAAACCTTCCTCTTAAGGAACATAAACTAACCCCGTGTCCCACAA---CTGATGTTCTATATTTG---ATGAGGTTACATTTGTGC-CTTTAAAACTATGACTTGCTAGGAATTTACAATATTGTTTTCATTTCCA-TTTGATCTGTGTGCCTTTGAGAA--GGGATTTTTTTTTTAATCTCCAGGTTATACTGGCTTTTTGCTTTTCAGCTTTGCTTTTAATTTGATGCTTCATTGTATGGAGACCAGA-AGACTATTGTCTACattatttatatatttaaataaCCTACTTGAAGTTGTGTGTTTGTCTCTCTGTCTGTCTCTAAAAAT i canFam3.chr3 I 192 C 0 e mm10.chr5 49151545 2500 + 151834684 I a score=183147.000000 s hg38.chr4_KI270790v1_alt 53063 73 + 220246 ggcaggtttaatcaatgtttccaagctatttgaatagaaAA---AGATTCCCCTCTTTTGAAGAAACGGAGTCCTT s panTro4.chr4 21441310 73 + 193495092 ggcaggtttaatcaatgtttccaagctatttgaatagaaAA---AGATTCCCCTCTCTTGAAGAAACGGAGTCCTT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21617099 71 + 198332218 ggcaggttttatcaatatttccaagccatttgaatagaaAA---AGATTCCCCTCTTTTGAAGAGAC--AGTCCTT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20228963 73 - 85365473 ggcaggttttatcaatgtttccaagctatttgaatagaaAA---AGTTTCCCCTCTTTTGAAGAAACGGAGTCCTT i nomLeu3.chr20 C 0 C 0 s macFas5.chr5 20737241 73 + 189454096 ggcaggttttatcaatgtttccaagctatttgaatagaaAA---AGATTCCCCTCTTTTGAAGAAATGGAGTCCTT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16333342 73 + 178775436 GGCAGGTTTTATCAATGTTTCCAAGCTATTTGAATAGAAAA---AGATTCCTCTCTTTTGAAGAAATGGAGTCCTT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19820349 70 - 48547382 ---AGGTTTTATCAGTGTTTCCAAGCTATTTGAATAGAAAA---AGATTCCCCTCTTTTGAAGAAATGGAGTCCTT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21172348 73 - 190850796 ggcaggttttgtcaatgtttccaggctatttgaatagaaat---ggtttcccctcttttgaagaaacagAGTCCTT i calJac3.chr3 C 0 C 0 s canFam3.chr3 3756753 75 - 91889043 AACTAGTCTTGTCAAGTTTACATGGACATTTGAA-AGAAAAGGTGGTTTCTTATCTTTAGAGGGAACAGAATCCTT i canFam3.chr3 C 0 C 0 e mm10.chr5 49151545 2500 + 151834684 I e rheMac3.chr5 16695646 188 + 184069350 M a score=294335.000000 s hg38.chr4_KI270790v1_alt 53136 122 + 220246 ATATACTTACAGGAGAT--GTTCGGCAGCCTTTTATTTAAATGGGGTGATAAATAAAATAAAATTCTAAAATCATTGCAGAAGGTGAAAAATT----AAAGAAGG-ATCCAGATTTGAAGGAGACTATA- s panTro4.chr4 21441383 122 + 193495092 ATATACTTATAGGAGAT--GTTCGGCAGCCTCTTATTTAAATGGGGTGATAAATAAAATAAAATTCTAAAATTGTTGCAGAAGGTGAAAAATT----AAAGAAGG-ATCCAGATTTGAAGGAGACTATA- i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21617170 113 + 198332218 ATATACTTATAGGAGAT--GTTTAGTAGCCTTTTATTTAAATGGGGTG---------ATAAAATTCTAAAATCGTTGCAGAAGGTGAAAAATT----AAAGAAGG-ATCCAGATTTGAAGGAGACTATA- i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20229036 122 - 85365473 ATGTACTTATAGAAGAT--GTTTGGTAGCCTTTTATTTAAATGGGGCGATAAATAAAATAAAATTCTAAAATCGTTGCAGAAGGTGAAAAATT----AAAGAAGG-ATCCAGATTTGAAGGAGACTATC- i nomLeu3.chr20 C 0 C 0 s macFas5.chr5 20737314 121 + 189454096 ATATACTTATTGGAGAT--GTTTGGTAGCCTTTTATTTAAATGGGGCTATAAATAAAATAAAATTCTATAATCCTTGCAGAAGGTGAAAAACT----AAAG-AGG-ATCCAGATTTGAAGGAGACTACG- i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16333415 122 + 178775436 ATATACTTATAGGAGAT--GTTTGGTAGCCTTTTATTTAAATGgggctataaataaaataaaattctataatCCTTGCAGAAGGTGAACAATT----AAAGAAGG-ATCCAGATTTGAAGGAGACTATG- i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19820419 112 - 48547382 ATATACTTATAGGAGAT--GTTTGATAGCCTTTTATTTAAATGGGGCTATAAATAAAATAAAATTTTATAATCCTTGCAGAAGGTGAA--------------AGG-ATCCAGATTTGAAGGAGACTATG- i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21172421 118 - 190850796 ACGTACTTATAGGAGAT--GTTTGGTAGCCT----TTTAAGTGGGGCTATAAATAAAATAAAATTCTATAATCCTTGCAGAAGGTGAAAAATT----CAAGAAGA-AACCAGATTTGAAGGAGACCATA- i calJac3.chr3 C 0 C 0 s mm10.chr5 49154045 121 + 151834684 --ATAAGTTTAGGAGATAAGATCGAGAGACTTTTGCTTAATTTGAGCCATAAATAAAATAAAAATCTGCAAATCTAGTAAGATTCTAAAATAT----GAGGAAGGTATTTAAAGTT-CAGAAGACATT-- i mm10.chr5 I 2500 C 0 s canFam3.chr3 3756828 118 - 91889043 ATATACTTTTAGGAGAC--CCTTGGTAAGCC----TTTAAGTGGGACAGCAA-----ATAAAATTCTATGATCCTAGTAGAAGGTAAACAATTAGAGAAAGAGGA-AACAAGATTTGAAGGAGACTGATT i canFam3.chr3 C 0 C 0 e rheMac3.chr5 16695646 188 + 184069350 M a score=132991.000000 s hg38.chr4_KI270790v1_alt 53258 42 + 220246 GTCTTTAGTAGTCAATAGTGAACCCTCAAATTGAGAGTGTAA s panTro4.chr4 21441505 42 + 193495092 GTCTTTAGTAGTCAATAGTGAACCCTCAAATTGAGAGTGTAA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21617283 42 + 198332218 GTCTTTAGTAGTCAATAGTGAACCCTCAAATTGAGAGTGTAA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20229158 41 - 85365473 GTCTTTAATAGTCAATAGTGAA-CCTCAAATTGAGAGTGTAA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16695837 42 + 184069350 GTCTTTAGTCGTCAACAGTGAACCCTCAAATTGAGAGTGTAA i rheMac3.chr5 M 188 C 0 s macFas5.chr5 20737435 42 + 189454096 GTCTTTAGTCGTCAACAGTGAACCCTCAAATTGAGAGTGTAA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16333537 42 + 178775436 GTCTTTAGTAGTCAACAGTGAACCCTCAGATTGAGAGTGTAA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19820531 42 - 48547382 GTCTTTAGTAGTCAACAGTGAGCCCTCAAATTGAGAGTGTAA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21172539 30 - 190850796 ----------GTCAGCAGTGTG-CCTCAAA-TGAGAGTGTAA i calJac3.chr3 C 0 C 0 s mm10.chr5 49154166 42 + 151834684 ATTTTGGGCAGTTAAAGGTAAACTTTCAATATAAGACTCTAA i mm10.chr5 C 0 I 1457 s canFam3.chr3 3756946 42 - 91889043 GTCTTTAGTTGTCGAAAATGAATGTTCAAAGCAGGAGCCTGA i canFam3.chr3 C 0 C 0 a score=3369483.000000 s hg38.chr4_KI270790v1_alt 53300 1043 + 220246 GGCAGAGTGTACACTTGAAGAGCTGGATAATATGAACCAAGACTAACAGAAGCTAAAACTAGATTTCAGAGTGAAATCAGAAAGAAAGTATCTTGACAACAAAATAATGTCTT-ATGCCTAGTCTCTCTACTACTCTTGTTCTCAAGTTTGCCTTATTTCAACATTCCCAGTATTTCTGTCTTTAATTTTTACCATTTTTGAGAATCTGAGAACTATCTGTACTAT------TATTATCCTGACAACTTTCTCCAAATCTATTTTATACCAATTCACTCTCACTTGTTATGTAGCTTTGCATTTAGTAAAAATATCCATGAACTAATGGAATTATGTAATGTGTA----TGTCATTATATATGACTGTTTTTA-AAAGTTTGTCAACATATTTTCTAGAAGAATCTCACTGATCCTTTGTAC--------------AATACTGCATAACTTGTAAACA-CTTATGCTGACTCCAGCCTCTGTGGGAGAGGAGGTGATCTTGCCCTCAAACTGACTTCAGGGAGGTCAGTCACAAAGGTGACAGCTGGGTAGCCATGGAGTTTAAACTAAGAGTCACTTGAAATAAGTAGAAGTAAGTACATCAGAGGCTAGA--CAGAACAC---TTGAATCAAGAGTCCAAGATGATTTGGAGGTTTTGAGATAGGAAAGTTTAGGGC--ACATCAC---TTTGATTTTGAATTGAGTTCAATAGTTCCTACATTAGGGGTTGGATTTTCAGGAA-CATAAGAAGGAAAATGTTTCTGCCTATTATTTCTTATACCTAAGGAACAACTGGGCTATTG-AATGAGAATAATGTCCAATACCTTACTGCTGATACTTCCTATTTttctccttctccttatcttttcctttcccctccccttcttcctcttttctcttcctcctcttccttttctttctTTAGCTAACTTCTTAGTAGTTATTTAGATACA-----CGTTTTCTGTTATCTGCATAATTTGTCATCTTCACAAGATTCTACATTCA-----TCTCTGAATTTATTGTACTATACTGAGACTCATTCTCAAATATTTAAATCACATTTTATATTGCAATCTTCGT s panTro4.chr4 21441547 1045 + 193495092 GGCAGAGTGTACACTTGAAGAGCTGGATAATATGAACCAAGACTAACAGAAGCTAAAACTAGATTTCAGAGTGAAATCAGAAAGAAAGTATCTTGACAACAAAATAATGTCTT-ATGCCTAGTCTCTCTACTACTCTTGTTCTCAAGTTTGCCTTATTTCAACATTCCCAGTATTTCTGTCTTTAATTTTTACCATTTTTGAGAATCTGAGAACTATCTGTACTAT------TATTATCCTGACAACTTTCTCCAAATCTATTTTATACCAATTCACTCTCACTCATTATGTAGCTTTGCATTTAGTAAAAATATCCATGAACTAATGGAATTATGTAATGTGTA----TGTCATTATATATGACTGTTTTTA-AAAGTTTGTCAACATATTTTCTAGAAGAATCTCACTGATCCTTTGTAC--------------AATACTGCATAACTAGTAAACA-CTTATGCTGACTCCAGCCTCTGTGGGAGAGGAGGTGATCTTGCCCTCAAACTGACTTCAGGGAGGTCAGTCACAAAGGTGACAGCTGGGTAGCCATGGAGTTTAAACTAAGAGTCACTTGAAATAAGTAGAAGTAAGTACATCAGAGGCTAGAGACAGAACAC---TTGAATCAAGAGTCCAAGATGATTTGGAGGTTTTGAGATAGGAAAGTTTGGGGC--AAATCAC---TTTGATTTTGAATTGAGTTCGATAGTTCCTACATTAGGGGTTGGATTTTCAGGAA-CATAAGAAGGAAAATGTTTCTGCCTATTATTTCTTATACCTAAGGAACAACTGGGCTATTG-AATGAGAATAATGTCCAATACCTTGCTGCTGATACTTCCTATTTttctccttctccttatcttttcctttcccctccccatcttcctcttttctcttcctcctcttccttttctttctTTAGCTAACTTCTTAGTAGTTATTTAGATACA-----CGTTTTCTGTTATCTGCATAATTTGTCATCTTCACAAGATTCTACATTCA-----TCTCTGAATTTATTGTACTATACTGAGACTCATTCTCAAATATTTAAATCACATTTTATATTGCAATCTTTGT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21617325 1046 + 198332218 GGCAGAATGTACACTTCAAGAGCTGGATAATATGAACCAAGACTAACAGAAGCTAAAACTAGATTTCAGAGTGAAATCAGAAAGAAAGTATCTTTACAACAAAATAATGTCTTAATGCCTAGTCTCCCTACTACTCTTATTCTCAAGTTTGCCTTATTTCAGCATTCCCAGTATTTCTGTCTTTGATTTTTACCATTTCTGAGAATCTGAGAACTATCTGTACTAT------TATTAACCTGACAACTTTCTCCAAATCTGTTTTATACCAATTCACTCTCACTCGTTATGTAGCTTTGCATTTAGTAAAAATATCCATGAACTAATGGAATTATGTAACATGTA----TGTCATTATATATGACTGTTTTTA-AAAGTTTGTCAACATATTTTCTAGAAGAATCTCACTGATCCTTTGTAC--------------AATACTGCATAACTAGTAAACA-TTTATGCTGACTCCAGCCTCTGTGAGAGACGAGGTGATGTTGCCCTCAAACTGACTGCAGGGAGGTCAGTCACAAAGGTGACAGCTGGGTAGCCATGGAGCTTAAACTAAGAGTCACTTGAAATAAGTAGAAGTAAGTACATCAGAGGCTAGAGACGGAACAT---TTGAATCAAGAGTCCAAGATGATTTGGAGGTTTTGAGATAGGAAAGTTTAGGGC--AAATCAC---TTTGATTTTGAATTGAGTTCGATAGTTCCTACATTAGGGGTTGGATTTTCAGGAA-CATAAGAAGGAAAATGTTTCTGCCTATTATTTCTTATACCTAAGGAACAAGTGGGCTATTG-AATGAGAATAATGTCCAATACCTTGCTGCTGATACTTCCTATTTttctccttctccttatcttttcctttcccctccccatcttcctcttttctcttcctcctcttctttttctttctTTAGCTAACTTCTTAGTAGTTATTTAGATACA-----CGTTTTCTGTTATCTGCATAATTTGTCATCTTCACAAGGGTCTACATTCA-----TCTCTGAATTTATTGTACTCTACTGAGACTCAGTCTCAAATATTTAAATCACATTTTATATTGCAATCTTCGT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20229199 1039 - 85365473 GGCAGAATGTACACTTGAAGAGCTGGATAATATGAACCAAGACTAACAGAAGCTAAAACTAGATTTCAGAGTGAAATCAGAAAGA----ATCTTTACAACAAAATAATGTCTT-ACGCCTAGTCTCTCTACTACTCTTATTCTCAAGCTTGCCTTATTTCAGCATTCCCAGTATTTCTGTCTTTAATTTTTACCATTTCTGAGAATCTAGGAACTATCTGTACTAT------TATTAACCTGACAACTTTCTCCAAATCTATTTTACACCAATTCACTCTCACTTGTTATGTAGCTTTGCATTTAGTAAAAATATCCATGAACTAATGGAATGATGTAATGTGTA----TGTCATTATATATGACTGTTTTTA-AAAGTTTGTCAACATATTTTCTAGAAGAGTCTCACTGATCCTTTGTAC--------------AATACTGTATAACTAGTAAACA-TTTATGCTGACTCCAGCCTCTGTGGGAGAGGAGGTGATGTTGCCCTCAAACTGACTGCAGGGAGGTCAGTCACAAAGGTGACAGCTGGGTAGCCATGGAGCTTAAACTAAGAGTCACTTGAAATAAGTAGAAGTAAGTACATCAGAGGCTAGAGACAGAACAC---TTGAATCAAGAGTCCAAGATGATTTGAAGGTTTTGAGATAAGAAAGTTCAGGGC--AAATCAC---TTTGATTTTGAATTGAGTTCCATAGTTCCTACATTAGGGGTTGGATTTTCAGGAA-CACAAGAAGGAAAATGTTTCTGCCTCTTATTTCTTATACCTAAGGAACAAGTGGGCTATTG-AATGAGAATAATGTCCAATACCTTGCTGTTGATActtcctatttttctcattctccttatcttttcctttcccctccccatcttcctcttttctcttcctcctcttctttttctttcttTAGCTAACTTCTTAGTAGTTATTTAGATACA-----TGTTTTC--TTATCTGCATAATTTATCATCTTCACAAGGGTCTACATTCA-----TCTCTGAATTTATTGTACTATACTGAGACTCATTCTCCAATATTTAAATCACATTTTATATTGCAACCTTCGT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16695879 1047 + 184069350 GGCAGAATGTATATTGGAAGATCCGGATAATAGGAACCAAGACTAACTGAAGCTAAAACTAGATTTCCGAGTGAAATCAGAAAGA----ATCTTTACAAC-AACTTATGTCTT-ACACCTAGCCTCTCTACTACTCTTATTCTCAAGTTTGCCTTATTTCAGCATTCCCAGTATTTCTGTCTTAAATTTTTACCATTTCTGAGAATCTGAGAATTATCTGTACTATTATTAATATTAATCTGACAAGTTTCTCCAAATCTATTTTATACCAATTCACTCTCACTCATTATGTAGTTTTGCATTTACTAAAAATATCCATGAACTAATGGAATTATGTAATGTGTA----TGTCATTATATATGACTGTTTTTA-AAAGTTTGTCAACATATTTTCTAGAATAATCTCACTGATCCTTTGTAC--------------AATACTGCATAACCCGTAAACA-TTTATGCTGACTCCAGCCTCTGTGGGAGAGCAGGTGATGTTGCCTTCAAAGTGACTGCAGGGAGGTCAGTCACAAAGGTGACAGCTGGGTAGCCATGGAGCTTAAACTAAGAGTCACTCGAAATAAGTAGAAGTAAGTACACGAGAGGCTAGAGACAGAACAC---TTGAATCAAGAGTCCAAGATGATTTGGAGGTTTTGAGATAGGAAAGTTTAGGGC--AAATCAC---TTCGATTTTGAATTGAGCTTGATAGTTCCTACAGTAGGGGTTGGATTTTCAGGAA-CATAAGAAGGAAAATGTTTCTGCCTATTATTTCTTATACCTAAGGAACAACTGGGCTATTG-AATGAGAATAATGTCTAATACCTTGCTGCTGATACTTTCTATTTttctcattctccttatcttttcatttctcctcctcatcttcctcttttctcctcctcctcttctttttctttctGTAGCTAACTTCTTAGTAG----TTAAATACA-----CGTTTTCTACTATCTGCATAATTTGTCATCTTCACAAGGGTCTACATTCAAACCATCTCTGAATTTATTATACTATACTGAGACTCATTCTCTAATATTTAAATCACATTTTATATCGCAATCTTCGT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20737477 1047 + 189454096 GGCAGAATGTATATTGGAAGATCCGGATAATAGGAACCAAGACTAACTGAAGCTAAAACTAGATTTCCGAGTGAAATCAGAAAGA----ATCTTTACAAC-AACTTATGTCTT-ACACCTAGCCTCTCTACTACTCTTATTCTCAAGTTTGCCTTATTTCAGCATTCCCAGTATTTCTGTCTTAAATTTTTACCATTTCTGAGAATCTGAGAATTATCTGTACTATTATTAATATTAATCTGACAAGTTTCTCCAAATCTATTTTATACCAATTCACTCTCACTCATTATGTAGTTTTGCATTTACTAAAAATATCCATGAACTAATGGAATTATGTAATGTGTA----TGTCATTATATATGACTGTTTTTA-AAAGTTTGTCAACATATTTTCTAGAATAATCTCACTGATCCTTTGTAC--------------AATACTGCATAACCCATAAACA-TTTATGCTGACTCCAGCCTCTGTGGGAGAGCAGGTGATGTTGCCTTCAAAGTGACTGCAGGGAGGTCAGTCACAAAGGTGACAGCTGGGTAGCCATGGAGCTTAAACTAAGAGTCACTCGAAATAAGTAGAAGTAAGTACATGAGAGGCTAGAGACAGAACAC---TTGAATCAAGAGTCCAAGATGATTTGGAGGTTTTGAGATAGGAAAGTTTAGGGC--AAATCAC---TTCGATTTTGAATTGAGCTTGATAGTTCCTACAGTAGGGGTTGGATTTTCAGGAA-CATAAGAAGGAAAATGTTTCTGCCTATTATTTCTTATACCTAAGGAACAACTGGGCTATTG-AATGAGAATAATGTCTAATACCTTGCTGCTGATACTTTCTAtttttctcattctccttatcttttcatttctcctcctcatcttcctcttttctcctcctcctcttctttttcttTCTGTAGCTAACTTCTTAGTAG----TTAAATACA-----CGTTTTCTACTATCTGCATAATTTGTCATCTTCACAAGGGTCTACATTCAAACCATCTCTGAATTTATTATACTATACTGAGACTCATTCTCTAATATTTAAATCACATTTTATATCGCAATCTTCGT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16333579 1038 + 178775436 GGCAAAATGTATACTGGAAGAGCGGAATAATAGGAACCAAGACTAACTGAAGCTAAAACTAGATTTCGGAGTGAAATCAGAAAGA----ATCTTTACAAC-AACTTATGTCTT-ACACCTAGCCTCTCTACTACTCTTATTCTCAAGTTTGCCTTATTTCAACATTCCcagtatttctgtctttaatttttaccATTTCTGAGAATCTGAGAATTATCTGTGCTAT------TATTAATCTGACAACTTTCTCCAAATCTATTTTATACCAATTCACTCTCACTCATTATGTAGCTTTGCATTTAGTAAAAATATCCATGAACTAATGGAATTATGTAATGTGTA----TGTCATTATATAtgactgttttta-aaagtttgtcaACATATTTTCTAGAATAATCTCACTGATCCTTTGTAC--------------AATACTGCATAACTCGTAAACA-TTTATGCGGACTCCAGCCTCTGTGGGAGAGGAGGTGATGTTGCCTTCAAACTGACTGCAGGGAGGTCAGTCACAAAGGTGACAGCTGGGTAGCCATGGAGCTTAAACTAAGAGTCACTCGAAATAAGTAGAAGTAAGTACATGAGAGGCTAGAGACAGAACAC---TTGAATCAAGAGTCCAAGATGATTCGGAGGTTTTGAGATAGGAAAGTTTAGGGC--AAATCAC---TTTGATTTTGAATTGAGTTTGATAGTTCCTACAGTAGGGGTTGGATTTTCAGGAA-CATAAGAAGGAAAATGTTTCTGCCTATTAT---TTATACCTAAGGAACAATTGGGCTATTG-AATGAGAACAATGTCTAATACCTTGCTGCTgatactttctatttttctctttctccttatcttttcatttcccttccccatcctcctcttttctcttcctccccttctttttctttctgtagctAACTTCTTAGTAG----TTAAATACA-----CGTTTTCTACTGTCTGCATAATTTGTCATCCTCACAAGGGTCTACATTCAAACCGTCTCTGAATTTATTATACTATACTGAGACtcattctcaaatatttaaatcacattttatatTGCAATCTTCAT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19820573 1039 - 48547382 GGCAGAATGTATACTGGAAGAGCCGAATAATAGGAACCAAGACTAACTGAAGCTAAAACTAGATTTTGGAGTGAAATCAGAAAGA----ATCTTTACAAC-AACTTATGTCTT-ACACCTAGCCTCTCCACTACTCTTATTCTCAAGTTTGCCTTATTTCAACATTCCCAGTATTTCTGTCTTTAATTTTTACCATTTCTGAGAATCTGAGAATTATGTGTACTAT------TATTAATCTGACAACTTTCTCCAAATCTATTTTATACCAATTCACTCTCACTCATTATGTAGCTTTGCATTTAGTAAAAATATCCATGAACTAATGGAATTATGTAATGTGTA----TGTCATTATATATGACTGTTTTTA-AAAGTTT-TCAACATATTTTCTAGAATAATCTCACTGATCCTTTCTAC--------------AATACTGCATAACTCGTAAACA-TTTATGCTGACTCCAGCCTCTGTGGGAGAGGTGGTGATGTTGCCTTCAAACTGACTGCAGGGAGGTCAGTCACAAAGGTGACAGCTGGGTAGCCATGGAGCTTAAACTAAGAGTCACTTGAAATAAGTAGAAGTAAGTACATGAGAGGCTAGAGACAGAACAC---TTGAATCAAGAGTCCAAGATGATTTGGAGGTTTTGAGATAGGAAAGTTTAGGGC--AAATCAC---TTTGATTTTGAATTGAGTTTGATAGTTCCTACAGTAGGGGTTGGATTTTCAGGAA-CATAAGAAGGAAAATGTTTCTGCCTATTATTTCTTATACCTAAGGAACAATTGGGCTATTG-AATGAGAATAATGTCTAATACTTTGCTGCTGATActttcta-ttttctctttctccttatcttttcatttcccttccccgtcctcctcttttctcttcctccccttctttttctttctGTAGCTAACTTCTTAGTAG----TTAAATACA-----CATTTTCTACTATCTGCATAATTTGTCATCCTCACAAGGGTCTACATTCAAACCATCTCTGAATTTATTATACTATACTGAGACTCATTCTCAAATATTTAAATCACATTTTATATTGCAATCTTCAT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21172569 1037 - 190850796 GGCAGAATGTGCACTTGAAGAGCCAAACAATATAATCCAAAACTAACAGAAGCTAAAATTAGATTTCAGAGTAAAATCAGAAAGA----ATCTTTACAACAAAATAACAACTT-ATGCCTAGTCTCTCAACTACTCTTCTTCTCATATTTGCCTTATGTTTGCATTCCCAGTATTTCTATCTTTAATGTTCACCATTTCTGAGACTCTGAGAATTGACTCTACCAT------TATTAACCTGATAACTTTCTTCCAAACTATTTTATACCAATTCACTCTCACTCATTATGTAGCTTCACATTTAGTAAATATATCCATGAACTAATGCAATTATGTAACGTGTA----TGTCATTATATACAACTGTTTTTA-AAAGTCTGTCAACATATTTCCTAGAATAATCTCACTGATTATTTGTAC--------------AATACT-CATAACTAGTAAACA-TTTATGCTGACTCCAGCCTCTGTGGTAGTGGAGCTGATGTTGCCCTCAGAGTAACTGCAGGGAGGTCACTCACAGAGGTGAAAGCTGGGCAGCCATGGAGCTTAAACTAAGAGTCACTCAAAATATGTAGAAGAAAGTACATGAGAAGCTAGAGACAGAACGC---TTGAATCAAGAGTCCAAGATGATTTGGAGGTTGTGAGATAGGAAACTTTAGGGC--AAATCAC---TTCAGTTTTGAATTGAGTTTGGTAGTTCCTACATTAGGGGTTGGATTTTCAAGAA-CGT---AAGGACAATGTTTCTGCCTACTATTTCTTATACCCAAAAAACAACTGGGCTATTGAAAAGAGAATAAGGTCCAATACCTTGCTGTTGATATGtcctatctttttc---ctccttatccttttctttcccctccccatctttctcttttctcttcct---cttttttttctttcTGCAACTAACTTCTTAGCAGTTATTTAGATGTA-----AGTTTTCTATTATCTACATAATTTGTCATCTTCACAAGGGACTACATTCAAACTATCTTTGAATTTATAGTATTATACTGCTACTCATTATCAAATATTTAAATCGCATTTTACATTGCAATCTTCAT i calJac3.chr3 C 0 C 0 s canFam3.chr3 3756988 982 - 91889043 GACAGAATGTCAGCTGGAGGAACTGAATAAAATAAGTTGAGACTAACAGAAGGTAAGACTGGGCTTGAGGCTGGAATCCAAAAGA-AGTGTCTCTAAAAGAGAATAAAGCCT--ACGTCCGGTCATTCTACT-CTCCTCTTTCTGCATCTGCCTTACTTCACTATTTCCAATATTTCTA-CTTAGATTTTTATCATTTATGAGAATCTGAGAATTATCTCTACTGT------TACTCACCTAACAACTTT----AAGTCTGTTTCATATCAATTCACCTT------TGAAACAGCATTGTTTTAAGTAACAATATTCATGAACTGACGGAATGACATGATGTATATACCTGCTGTTAAATATGACTGTTTAAATAAAGCTCGTCTATGTATCTGCTAAAATAATCTTAC----CCCTTGTACATAAGACTTTGATAAACCCTGCATAATCAATAAGTGCTTTATACTTATTCTGGGACTTGTGGGAG---AGCTGGTATTGCCCGCAAGCTAACTGCAGGGAGGTGAGTCATGGAGGTGA----TTGACAGCCCAGGGGCTTGAAATATGAGCCACCTGAAATAAATAGAAATACGTAGATGAGAAGCTAGGGATCTAACACTTGTTGAATGGAGAGTCCAAACTGATTTGGAAGTCTTGAGATAGACAAGTTTAGGGCAGAAATCACTTATTCTGTTCTGAATTAAAGTCAACACTTTCTATATCAGAGGTCAGATGCTCAAGCATCTTAAGGAAGAAAATATTTCTCATTATTATTTCTTTTA-CTGAGGAACAATCTGGCTATTG-GAAGGGAATAATGTCCAACAATTTGC---------------------------------------------------------------TTTCT----------TTTGTTTTTTTCCCATAGCTTATTTCTTAGCAGTTATTCAGGCATAAGTTGAGTTTCCTATTATGTACACAATTTGTCATCTCCACAGGGGACTAGAGTCACACAGTCTCTAGACTCATTGTCCTATACTGATA---ACTCTCAAATATTTAAAGCACATTTTAttttttaatgttttt i canFam3.chr3 C 0 I 125 e mm10.chr5 49154208 1457 + 151834684 I a score=431409.000000 s hg38.chr4_KI270790v1_alt 54343 138 + 220246 GTGATAGTTTATAACAAACCAAATTTATTTCAATAGTTAATTATGGAATAGGTAGACAGATGCTGCTTTGATAGTATGAAAAGTATCACAAATTATATTAT---------------TTCAAAAGAAAATTATAATTAAATGTCAGCTTCCAAC s panTro4.chr4 21442592 138 + 193495092 GTGATAGTTTATAACAAACCAAATTTATTTCAATAGTTAATTATGGAATAGGTAGATAGATGCTGCTTTGATAGTATGAAAAGTATCACaaattatattat---------------ttcaaaagaaaattataattaaatGTCAGCTTCCAAC i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21618371 138 + 198332218 GTGATAGTTTATAACAAGCCATATTTATTTCAATAGTTAATTATGGAATAGGTAGATAGATGCTGCTTTGATAGTATGAAAAGTATCACaaattatattat---------------ttcaaaagaaaattataattaaatGCCAGCTTCCAAC i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20230238 138 - 85365473 GTGATAGTTTATAACAAGCCGAATTTATTTCAATAGTTAATTATGGAATAGTTAGATAGCTGCTGCTTTGATAGTATGAAAAGTATCACGAATTATATTAT---------------TTCAAAAGAAAATTATAATTAAATGCCAGCTTCCAAC i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16696926 133 + 184069350 GTGATAGTTTATAACAACCCAAATTTATTTCAATAGTTACTTATGGAATAGGTAGATAGATGCTGCTTTCATAGTATGAAAAGTATCACAA-----ATTAT---------------TTCAAAAGAAAATTATAATTAAATGCCAGCCTCCAAC i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20738524 133 + 189454096 GTGATAGTTTATAACAACCCAAATTTATTTCAATAGTTACTTATGGAATAGGTAGATAGATGCTGCTTTCATAGTATGAAAAGTATCACAA-----ATTAT---------------TTCAAAAGAAAATTATAATTAAATGCCAGCTTCCAAC i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16334617 133 + 178775436 GTGATAGTTTATAACAATCcaaatttatttcaatagttaATTATGGAATAGGTAGATAGATGCTGCTTTGATAGTATGAAAAGTatcacaa-----attat---------------ttcaaaagaaaattataattaaatgccAGCTTCCAAC i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19821612 133 - 48547382 GTGATAGTTTATAACAATCCAAATTTATGTCAATAGTTAATTATGGAATAGGTAGATAGATGCTGCTTTGATAGTATGAAAAGTATCACAA-----ATTAT---------------TTCAAAAGAAAATTATAATTAAATGCCAGCTTCCAAC i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21173606 130 - 190850796 CTGATAGCTTATAACAAGCCAAATTTATTTCAA----TAATTATGAAATAGGT----AGCTGCTGCTCTGATAGTATGAAAAGTATCACAAATTGTATTAT---------------TTCAAAAGAAAATTATAATTAAATCCCAGTTTCCAGC i calJac3.chr3 C 0 C 0 s canFam3.chr3 3758095 147 - 91889043 GTGTCAGTTTGTAGCAAGCCACATTTATTTCATTTGTTAAATACAGAATAGGT----ACCTGTGGCTTTGCTGGTGAGAAAGATACCATAAACTATATGATTAGAAAAAATACCCGTCCAAAAAAGAA--AAAAATAAACCCTAGTTTCCAAC i canFam3.chr3 I 125 I 4174 e mm10.chr5 49154208 1457 + 151834684 I a score=688250.000000 s hg38.chr4_KI270790v1_alt 54481 233 + 220246 AGTCACATACAAAT---CTGCATATGATCTGCCAATGCAGACAACCCTTAGAATGGTCTTGAAAATCCCATATTAAAgatgatagagtcatcagatggaaggagcttggtcccctaagtcatcacttggaagagagccattcatttgcgtatacttcttagggctcacaggtgagcaagaaaataaactatttggttaaacaactgaaaattttttt-agtttgttgctcacaggag s panTro4.chr4 21442730 233 + 193495092 AGTCACATACAAAT---CTGCATATGATCTGCCAATGCAGACAACCCTTAGAATGGTCTTGAAAATCCCATATTAAAgatgatagagtcatcagatggaaggagcttggtcccctaagtcatcacttggaagagagccattcatttgcgtatacttcttagggctcacaggtgagcaagaaaataaactatttggttaaacaactgaaaaatttttt-agtttgttgctcacaggag i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21618509 233 + 198332218 AGTCACATACAAAT---CTGCATATGATCTGCCAATGCAGACAACCCTTAGAATGGTCTTGAAAATCCCATACTAAAgatgatagagccaacagatggaaggagcttgggcctctaagtcatcacttggaagagagccattcatttgcatatacttcttagggctcacaggtgagcaagaaaataaactatttggttaaacaactgaaatttttttt-agtttgttgctcacaggag i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20230376 233 - 85365473 AGTCACATACAAAT---CTGCATATGATCTGCCAATGCAGACAACCCTTAGAATGGTCTTGAAAATCCCATATTAAAgatgatagagccataagatggaaggagcttgggcccctaagtcatcacttggaagagagccattcatttgcgtatacttcttagggctcacaggtgagcaagaaaataaactatttggttaaacaactgaaatatttttt-agtttgttgcttacaagag i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16697059 233 + 184069350 AGGCACCTACAAAT---CTGCATATGACCTGCCAATGCAGACAACCCTTAGAATGGTCTTGAAAATCCCATATTAAAgatgatagagtcataagatggaaggagcttgggcccctaagtcaccacttggaggagagccattcatttgcatatacttcttagggctcacaggggagccagaaaataaactatttggttaaacaactgatttttttttt-agtttgttgctcacaggag i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20738657 233 + 189454096 AGGCACCTACAAAT---CTGCATATGACCTGCCAATGCAGACAACCCTTAGAATGGTCTTGAAAATCCCATATTAAAgatgatagagtcataagatggaaggagcttgggcccctaagtcaccacttggaggagagccattcatttgcatatacttcttagggctcacaggggagccagaaaataaactatttggttaaacaactgaattttttttt-agtttgttgctcacaggag i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16334750 233 + 178775436 AGGCACATACAAAT---CTGCATATGATCTGCCAATGCAGACAACCCTTAGAATGGTCTTGAAAATCCCATATTAAAGATGATAGAGCCAT-AGATGGAAGGAGCTTGGGCCCCTAAGTCACCACGTGGAGGAGAGCCATTCATTTGCGTATACTTCTTAGGGCTCACAGGGGAGCCAGAAAATAAACTATTTGGTTaaacaactgaatttttttttcagtttgttgctCACAGGAG i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19821745 232 - 48547382 AGGCACATACAAAT---CTGCATATGATCTGCCAATGCAGACAACCCTTAGAATGGTCTTGAAAATCCCATATTAAAgatgatagagccat-agatggaaggagcttgtacccctaagtcaccacttggaggagagccattcatttgcatatacttcttagggctcacaggggagccagaaaataaactatttggttaaacaactgaaatgtttttt-agtttgttgctcacaggag i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21173736 235 - 190850796 AGTCACATATAAATCTCCTGTGTATGACCTGCCAATGCAGACAACCCTTACAATGGTCTTGAAAATCATGTATTAAAgatgacagttccgcaagatggaaagagtgtaggcccctaagtcaccacttggaggagagccattcatttgggtgtacttcttagggctcacagttgagcaggaaaataaactattttgttaaacaactgagttgttttt--agtttgttgctcatagaag i calJac3.chr3 C 0 C 0 e mm10.chr5 49154208 1457 + 151834684 I e canFam3.chr3 3758242 4174 - 91889043 I a score=1187146.000000 s hg38.chr4_KI270790v1_alt 54714 344 + 220246 ttggcctaTTGTGTGAGGCTTAGCAAATATCGGTAGAATGACAGACTGAGTCAATAAGT----AAATGCTGCTAC---TCAACATTTGTTTCTGCCCATAGAAGCC--TAAATTTTTTAGTGGTTTGTTTCTTGTCTCCAACTTAAAAACCCTGACATTGGAGATTCTAAGAAATCAACTGATTTAAGACTGCTTCACATAAAGCATCTTTTATGGGGTGAAAA-CCAAGAAGCATAAAAGCC-----CACTGCTCTGCTA--TATGACAGTTCCCGTAGGTATAACATAAACCAAGGTCACGTCGGCACTAAGCCAGAGCACAG-TATTTTGCATTTTCTGCTAATGCCGAAAAACACATT s panTro4.chr4 21442963 344 + 193495092 ttggcctaTTGTGTGAGGCTTAGCAAATATCGGTAGAATGACAGACTGAGTCAATAAGT----AAATGCTGCTAC---TCAACATTTGTTTCTGCCCATAGAAGCC--TAAATTTTTTAGTGGTTTGTTTCTTGTCTCCAACTTAAAAACCCTGACATTGGAGATTCTAAGAAATCAACTGATTTAAGACTGCTTCATATAAAGCATCTTTTATGGGGTGAAAA-CCAAGAAGCATAAAAGCC-----CACTGCTCTGCTG--TATGACAGTTCCCGTAGGTATAACATAAACCAAGGTCACGTCGGCACTAAGCCAGAGCACAG-TATTTTGCATTTTCTGCTAATGCCGAAAAACACATT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21618742 344 + 198332218 ttgacctaTTGTGTGAGGCTTAGCAAATATCGGTAGAACGACAGACTGAGTCAATAAGT----AAATGCTACTAC---TCAACATTTGTTTCTGCCCATAGAAGCG--TAAATTTTTTAGTGGTTTGTTTCTTGTCTCCAACTTAAAAACCCTGACATTGGAGATTCTAAGAAATCAACTGATTTAAGACTGCTTCATATAAAGCATCTTTTATGGGGTGAAAA-CCAAGAAGCATAAAAGCC-----CACTGCTCTGCTG--TATGCCAGTTCCCGTAGATATAACATAAACCAAGGTCACATCAGCACTAAGCCAGAGCACAG-TATTTTGCATTTTCTGCTAATGCCGAAAAATACATT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20230609 344 - 85365473 ttggcctaTTGTGTGAGGCTTAGCAAGTATCGGCAGAATGACAGACTGAGTCAGTGAGT----AAATGCTACTAC---TCAACATTTGTTTCTGCCCATAGAAGAC--TAAATTTTTTAGTGGTTTGTTTCTTGTCTCCAACTTAAAAAGCCTGACATTGGAGATTCTAAGAAATCAACTGATTTAAGACTGCTTCATATAAAGCATCTTTTATGGGGTGAAAA-CCAAGAAGCATAAAAGCC-----CACTGCTCTGCTG--TATGACAGTTCCCGTAGGTATAACATAAACCAAGGTCACGTCGGCACTAAGCCAGAGCACAG-TATTTTGCATTTTCTGCTAATGCTGAAAAACACATT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16697292 344 + 184069350 ttggcctatcGCGTGAGGCTTAGCAAATATGGGTAGAATGACAGACTGAGTCAATAAGT----AAATGCTACTAC---TCAACATTGGTTTCTGCCCATAGAAGCC--TAAATTTTTTAGTGGTTTGTTTCTTGTCTCCAACTTAAAAAGCCTGACATTGGAGATTTTAAGAAATCAACTGATTTAAGACTGCTTCACATAAAGCATCTTTTATGGGGTGAAAA-CCAAGAAGCATACAAACC-----CTCTGCTCTGCTG--TATGACGGTTCCCGTAGGTATATCACAAGCCAAGGTCACATCAGCACTAAGCCAGAGCACAG-TATTTTGCATTTTCTGCTAATGCAGAAAAACACATT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20738890 344 + 189454096 ttggcctatcGCGTGAGGCTTAGCAAATATGGGTAGAATGACAGACTGAGTCAATAAGT----AAATGCTACTAC---TCAACATTGGTTTCTGCCCATAGAAGCC--TAAATTTTTTAGTGGTTTGTTTCTTGTCTCCAACTTAAAAAGCCTGACATTGGAGATTTTAAGAAATCAACTGATTTAAGACTGCTTCACATAAAGCATCTTTTATGGGGTGAAAA-CCAAGAAGCATACAAACC-----CTCTGCTCTGCTG--TATGACGGTTCCCGTAGGTATATCACAAGCCAAGGTCACATCAGCACTAAGCCAGAGCACAG-TATTTTGCATTTTCTGCTAATGCAGAAAAACACATT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16334983 344 + 178775436 TTGGCCTATCGCGTGAGGCTTAGCAAATATTGGTAGAATGACAGACTGAGTCAATAAGT----AAATGCTACTAC---TCAAGATTTGTTTCTGCCCATAGAAGCC--TAAATTTTTTAGTGGTTTGTTTCTTGTCTCCAACTTAAAAAGCCTGACATTGGAGATTTTAAGAAATCAACTGATTTAAGACTGCTTCACATAAAGCATCTTTTATGGGGTGAAAA-CCAAGAAGCATAAAAACC-----CTCTGCTCTGCTG--TATGATGGTTCCCGTAGGTATATCACAAGCCAAGGTCACACCAGCACTAAGCCAGAGCAcag-tattttgcattttctgctaatgcagaaaaacacatt i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19821977 344 - 48547382 ttggcctatcGCATGAGGCTTAGCAAATATTGGTAGAATGACAGACTGAGTCAATAAGT----AAATGCTACTAC---TCAACATTGGTTTCTGCCCATAGAAGCC--TAAATTTTTTAGTGGTTTGTTTCTTGTCTCCAACTTAAAAAGCCTGACATTGGAGATTTTAAGAAATCAACTGATTTAAGACTGCTTCACATAAAGCATCTTTTATGGGGTGAAAA-CCAAGAAGCATACAAACC-----CTCTGCTCTGCTG--TATGACGGTTCCCGTAGGTATATCACAAGCCAAGGTCACACCAGCACTAAGCCAGAGCACAG-TATTTTGCATTTTCTGCTAATGCAGAAAAACACATT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21173971 338 - 190850796 ctggcctaTTGTGTTAGACTTAACAAATATCAGTAGAGTGACAGAATGAGTCAATAAATAAAGAAATGCTACTAC---TCAACATTTGTTTCTGCTCAGAGAAGCC--TACATTTTTTAGTGGTTTGTTTTTTGTCTCCAACTTAAAAAGCCTGACTTTGGAGATTGTAAGAGATCAACTGATTTAAGACTGCTTCATATAAAGTATCTTTTATGGGGTGAAAA-CCAAGAAGCATAAAAACC-----TACTGCTCTGCTG--TATGACAGTTCCCATAGGTATACCATAAGTCAAGATCACAGCAGCACTAAACCAGACCA-----------CATTTTCTGATAATGCAGAAAAATACACT i calJac3.chr3 C 0 C 0 s canFam3.chr3 3762416 350 - 91889043 TTTgcacattgta-ggtgctcaataattatatgtagaatgac----tgagtCAATAAAT----AAATGCTACTACTCATCAACATTTGCTTCTGCTCCTTCAAGCCTATATATTTTTTAGTGTTTTTTTCCT--TCACTAACTTAACAGTCCT-ACATCGAAGATTCTAAGGGATCAACTGATTTAATGCTGTTCCATATAAAGTATGTTTTATGAGGTGAAAGCCCAAGAAGCATGAAAACCCAGTGCATTGCTTTGCTGCTTATGATGGCTTCCCCAGGCATACCATAAGACAAGGTCACATCAGCACTAAGCCAGAACACAGTTGTCTTGTATCTTCTGATAGTATAGAAAAACCCACT i canFam3.chr3 I 4174 T 2432 e mm10.chr5 49154208 1457 + 151834684 I a score=54054.000000 s hg38.chr4_KI270790v1_alt 55058 15 + 220246 TAAATATCCTGTTAC s panTro4.chr4 21443307 15 + 193495092 TAAATATCCTGTTAC i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21619086 15 + 198332218 TAAATATCCTGTTAC i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20230953 15 - 85365473 TAAATATCCAGTTAC i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16697636 15 + 184069350 TAAATATCCTGTTAC i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20739234 15 + 189454096 TAAATATCCTGTTAC i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16335327 15 + 178775436 taaatatcctgttac i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19822321 15 - 48547382 TAAATATCCTGTTAC i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21174309 15 - 190850796 TAAATATCCTGTTAC i calJac3.chr3 C 0 C 0 s canFam3.chr3 3760334 15 - 91889043 TGAATGTCCTTTGGC i canFam3.chr3 T 2432 C 0 e mm10.chr5 49154208 1457 + 151834684 I a score=3197179.000000 s hg38.chr4_KI270790v1_alt 55073 897 + 220246 TGAAAAAAAA-TCTAAATT-----TTCTTTGAAAA-------TTTTGGATACCAAAGTAGAAACATTAG----ACCTCGCTTGCATACTGACT---AAAAATCAATGCCCTAAAATTGCTGAGTGCACTCAGAATTATTTGATATGCTGTCCAAACTTGTTTATGAAAATATATTTTGGATGTGAGGTATAAGTCCCCGATTACTCATTTATC-CAAATTGCTAAATGTTTAGAAGACTTCAAAG---------TA----ATTTA--AATTA-----TTCCTTTTATTGATTTATTACTTTCTTTAATATTCATAATAACTTTTGCTCTTAACCCTGACCTCATAACATTTGAAGTGCTATGATAATAATTATCTTATATTAATATGCTAATTTCTTCAAACAGTACATTCAACTGAAACTTCTTAAGGTTTTAACCACTGTAGACTTAATTAGGTTAATTAAAATACTATTCTATTTTATTTTTACTTTGTGATTGCTCCATTATCATATAATGACACTCATAATAGTAATAGAATTTATTATTTATTGAGCATATCTTTTCTTCCTAAAACATTAGTTTTATGATTAACTTCAT--AAAAAAATTAAATAGGTGCATACCCTGTGTGGTTTTACCTATT--CTTTTTTA--GTTTAATAAATACCACCC--CATAAATGAATACCAACTTA-TCTTC-CAGTCATATATAGTATTAAAC-CTACCAAATCTATTTAGCTAAGA-GAAATTTACT---TGGGCTTGA-ATATGCTATCCTGGATGCTACACTGTGACTTCAGCCTAAGGAGTTTCCCCTGTCTGAAAAACCCTTGACTCTA--AC-TGGACAGCAATAGTAAT--CTCT-----GTGCCAATTTCTAAAGAGGCTGCAGATTGCAAGACACCTCATGATC-TGGCCTTGCACAACTCTTCTGCCCTCTATTACTTTTAGAACTG s panTro4.chr4 21443322 893 + 193495092 TGAAAAAAAA-TCTAAATT-----TTCTTTGAAAA-------TTTTGGATACCAAAGTAGAAACATTAG----ACCTCGCTTGCATACTGACT---AAAAATCAATGCCCTAAAATTGCTGAGTGCACTCAGAATTATTTGATATGCTGTCCAAACTTGTTTATGAAAATATATTTTGGATGTGAGGTATAAGTCCCCGATTACTCATTTATC-CAAATTGCTAAATGTTTAGAAGACTTCAAAG---------TA----ATTTA--AATTA-----TTCCTTTTATTGATTTATTACTTT----AATATTCATAATAACTTTTTCTCTTAACCCTGACCTCATAACATTTGAAGTGCTATGATAATAATTATCTTATATTAATATGCTAATTTCTTCAAACAGTACATTCAACTGAAACTTCTTAAGGTTTTAACCACTGTAGACTTAATTAGGTTAATTAAAATACTATTCTATTTTATTTTTACTTTGTGATTGCTCCATTATCATATAATGACACTCATAATAGTAATAGAATTTATTATTTATTGAGCATACCTTTTCTTCCTAAAACATTAGTTTTATGATTAACTTCAT--AAAAAAATTAAATAGGTGCATACCCTGTGTGGTTTTACCTATT--CTTTTTTA--GTTTAATAAATACCACCC--CATAAATGAATACCAACTTA-TCTTC-CAGTCATATATAGCATTAAAC-CTACCAAATCTATTTAGCTAAGA-GAAATTTACT---TGGGCTTGA-ATATGCTATCCTGGATGCTACACTGTGACTTCAGCCTAAGGAGTTTCCCCTGTCTGAAAAACCCTTGACTCTA--AC-TGGACAGGAATAGTAAT--CTCT-----GTGCCAATTTCTAAAGAGGCTGCAGATTGCAAGACACCTCATGATC-TGGCCTTGCACAACTCTTCTGCCCTCTATTACTTTTAGAACTG i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21619101 889 + 198332218 CGAAAAAAAA-TCTGAATT-----TTCTTTGAAAA-------TTTTGGATACCAAAGTAGAAACATTAG----ACCTCGCTTGCATACTGACT---AAAAATCAATGTCCTAAAATTGCTGAGTGCACTCAGAATTATTTGATATGCTGTCCAAACTTGTTTATGAAAATATATTTTGGATGTGAGGTATAAGTCCCTGATTACTCATTTATC-CAAATTGCTAAATGTTTA-AAGACTTCAAAG---------TA----ATTTA--AATTA-----TTCATTTTATTGATTTATTACTTTCTTTAATATTCATAATAGCTTTTTCTCTTAACTCTGATCTCACAATATTTGAAGTGCTATGATAATAATTATC--ATATTAATATGCTAATTTCTTCAAAGAGTATATTCAACTGAAACTTCTTAAGGTTTTAACCACTGTAGACTTAATTAGGTTAATTAAAATACTATTCTATTTTATTTTTACTTTGTGATTGCTCCATTATCATATAATGACACTC-----AGtaatataatttattatttattGAGCATACCTTTTTTTCCTGAAACATTAGTTTTATGATTAACTTCAT--AAAAAAATTAAATAGGTGCATACCCTGTATGGTTTTACCTACT---TTTTTTA--GTTTAATAAATACCACCC--CATACATGAATACCAACTTA-TCTTC-CAGTCATATATAGTATTAAACACTACCAAATCTATTTAGCTAAGA-GAAATTTACT---TGGGCTTGA-ATATGCCATCCTGGATGCTACACTGTGACTTCAGCCTAAGGAGTTTCCCCTATCTGAAAAACCCTTGACCCTA--AC-TGGACAGCAATAGTAAT--CTCT-----GTGTCAATTTCTAAAGAGGTTGCAGATTGCCAGACCCTTCATGATC-TGGCCTTGCACAACTCTTCTGCCCTCTATTACTTTTAGAACTG i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20230968 887 - 85365473 TGAAAAAAAA-TCTAAATT-----TTCTTTGAAAA-------TTTTGGATACCAAAGTAGAAACACTAG----ACCTCGCTTGCATACTGACT---AAAAATCAATGTCCTAAAATTGCTGAGTGCACTCAGAATTATTTGATATGCTGTCCAAACTTGTTTATGAAAATATATTTTGGATGTGAGGTATAAGTCCCCAATTACTCATTTATC-CAAATTGCTAAATGTTTA-AAGACTTCGAAG---------TA----attta--aatta-----ttcattttattgatttattactttctttaatattcatAA---CTTTTTCTCTTAACCCTGATCTCATAACATTTGAAGTGCTATGATAATAATT-----ATATTAATATGCTAATTTCTTCAAAGAGTATATTCAACTGAAAC-TCTTAAGGTTTTAACCACTGTAGACTTAATTAGGTTAATTAAAATATGATTCTATTTTATTTTTACTTTGTGATTGCTCCATTATCATATAATGACACTCATAATAGTAATAGAATTTATTATTTATTGAGCATACCCTTTTTTTCTAAAACATTAGCTTTATGATTAACTTCAT--AAAAAAATTAAATAGGTGCATACCCTGTGTGGTTTTACCTATT---TTTTTTA--GTTTAATAAATACCACCC--CATAAATGAATACCAACTTA-TCTTC-CAGTCATATATAGTATTAAACACTACCAAATCTATTTAGCTAAGA-GAAATTTACT---TGGGCTTGA-ATATGCTATCCTGGATGCTACACTGTGACTTCAGCCTGAGGAGTTTCCCCTATCTGAAAAACCCTTGACTCTA--AC-TGGACAGCAATAGTAAT--CTCT-----GTGTCAATTTCTAAAGAGGATGCAGATTGCCAGACCCCTCATGATC-TGGCcttgcacaactcttctgccctctattacttttagaactg i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16697651 893 + 184069350 TGGAAAAAAA-TCTAAATT-----TTCTTTGAAAA-------TTTTGGATACCAAAGTAGAAACATTAG----ACCTAGCTTGCATACTGACT---AAAAATCGATGTCCTAAAATTGCTGAGTGCACTC--AATTATTTGATATGCTGTCCAAACTTGTTTATGAAAATATATTTTGGATGTGAGGTATAAGTCCTCAATTACTCATTTATC-CAAATTGCTAAATGTTTAGAAGACTTCAAAA---------TA----ATTTA--AATTA-----TTCATTTTACTGATTTATTACTTTCTTTAATTTTCATAATAACTTTTTCTCTTAAGCCTGAACTCATAACTTGTGAAGTGCTACGATAATAATTATCTTATGTTAATATGCTAATTTCTTC--AGAGTATATTCAACTGAAAC-TCTTAAGGTTTTAACCACTGTAGACTTAATTAGGTTAATTAAAATACTATTCTATTTTATTTTTACTTTGTGATTCCTCCATTATCATAAAATGACACTCATAATAGCAATAGAATCTATTATTTATTGAGCATACCTTTTTTT-CTAAGACTTTAATTTTATGATTAACTTCAT-----AAAGTTAAATAGGTGCATACCCTGTGTGGTTTTACATATT--TTTTTTTGTTGTTTAATAAATACCATCC--CATAAATGAATACCAACTTA-TCATC-CAGTCATACGTAGTATTAAACAGTACCAAATCTATTTAGCTAAGA-GAAATTTACT---TGGGCTTGA-ATATGCTATCCTGGATGCTACACTGTGACTTCAGCCTAAGAAGTTTCCCCTGTCTGAAAAACCCTTGACTCTA--AC-TGGACAACAGTAGTAATACCTCT-----ATGCCAAATTCTAAAGAGGTTCCAGATTGCAAGACCCCTCATGATC-TGGCCTTGCACAATTTTTCTGCCCTCTATTACTTTTAGAactg i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20739249 897 + 189454096 TGGAAAAAAA-TCTAAATT-----TTCTTTGAAAA-------TTTTGGATACCAAAGTAGAAACATTAG----ACCTAGCTTGCATACTGACT---AAAAATCGATGTCCTAAAATTGCTGAGTGCACTCAGAATTATTTGATATGCTGTCCAAACTTGTTTATGAAAATATATTTTGGATGTGAGGTATAAGTCCTCAATTACTCATTTATC-CAAATTGCTAAATGTTTAGAAGACTTCAAAA---------TA----ATTTA--AATTA-----TTCATTTTACTGATTTATTACTTTCTTTAATTTTCATAATAACTTTTTCTCTTAAGCCTGAACTCATAACTTGTGAAGTGCTACGATAATAATTATCTTATGTTAATATGCTAATTTCTTC--AGAGTATATTCAACTGAAAC-TCTTAAGGTTTTAACCACTGTAGACTTAATTAGGTTAATTAAAATACTATTCTATTTTATTTTTACTTTGTGATTCCTCCATTATCATAAAATGACACTCATAATAGCAATAGAATCTATTATTTATTGAGCATACCTTTTTTT-CTAAGACTTTAATTTTATGATTAACTTCAT--AAAAAAGTTAAATAGGTGCATACCCTGTGTGGTTTTACATA-T--TTTTTTTGTTGTTTAATAAATACCACCC--CATAAATGAATACCAACTTA-TCATC-CAGTCATACGTAGTATTAAACAGTACCAAATCTATTTAGCTAAGA-GAAATTTACT---TGGGCTTGA-ATACGCTATCCTGGATGCTACACTGTGACTTCAGCCTAAGAAGTTTCCCCTGTCTGAAAAACCCTTGACTCTA--AC-TGGACAACAGTAGTAATACCTCT-----ATGCCAAATTCTAAAGAGGTTCCAGATTGCAAGACTCCTCATGATC-TGGCCTTGCACAATTTTTCTGCCCTCTATTACTTTTAGAactg i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16335342 898 + 178775436 tggaaaaaaa-tctaaatt-----ttctttgaaaa-------ttttggATACCAAAGTAGAAACATTAG----ACCTAGCTTACATACTGACT---AAAAATCGATGCCCTCAAATTGCTGAGTGCACTCAGAATTATTAGATATGCTGtccaaacttgttttttaaaatatattttggatgtgAGGTATAAGTCCTCAATTACTCATTTATC-CAAATTGCTAAATGTTTAGAagacttcaaaa---------ta----attta--aatta-----ttcattttattgatttattactttctttaatattcataataactttttcTCTTAAGCCTGAACTCATAACATGTGAAGTGCTACGATAATAATTATCTTATGTTAATATGCTAATTTCTTCAAAGAGTATATTCAACTGAATC-TCTTAAGGTTTTAACCACTGTAGACTTAATTAGGTTAATTAAAatactattctattttatttttactttgtgctTGCTCCATTATCATATAATGACACTCATAATAGTAATAGAatctattatttattgagcataccttttttt-CTAAGACTTTAATTTTATGATTAACTtcat--aaaaaagttaaataggTGCATACCCTGTgtggttttacatatt--ttttcttg--gttTAATAAATACCACCC--CATAAATGAATACCAACTTA-TCATC-CAGTCATACGTAGTATTAAACAGTACCAAATCTATTTAGCTAAGA-GAAATTTACT---TGGGCTTGA-ATACGCTATCCTGGATGCTACACTGTGACTTCAGCCTAAGAAGTTTCCCCTGTCTGAAAAACCCTTGACTCTA--AC-TGGACAGCAATAGTAATACCTCT-----GTGCCAATTTCTAAAGAGGTTCCAGATTGCAAGACCCCTCATGATC-TGGCCTTGCACAATTCTTCTGCCCTCTATTACTTTTAGAACTG i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19822336 896 - 48547382 TGGAAAAAAA-TCTAAATT-----TTCTTTGAAAA-------TTTTGGATACCAAAGTAGAAACATTAG----ACCTAGCTTGCATACTGACT---AAAAATCGATATCCTAAAATTGCTGAGTGCACTCAGAATTATTTGATATGCTGTCCAAACTTGTTTATGAAAATATATTTTGGATGTGAGGTATAAGTCCCCAATTACTCATTTATC-CAAATTGCTAAATGTTTAGAAGACTTCAAAA---------TA----attta--aatta-----ttcattttattgatttattactttctttaatattc---atAACTTTTTCTCTTAAGCCTGAACTCATAACATTTGAAGTGCTACGATAATAATTATCTTATGTTAATATGCTAATTTCTTCAAAGAGTATATTCAACTGAAAC-TCTTAAGGTTTTAACCACTGTAGACTTAATTAGGTTAATTAAAATACTATTCTATTTTATTTTTACTTTGTGATTGCTCCATTATCATATAATGACACTCATAATAGTAATAGAATTTATTATTTATTGAGCATACCTTTTTTT-CTAAGACTTTAGTTCTATGATTAACTTCAT-AAAAAAAATTAAATAGGTGCATACCCTGTGTGGTTTTACATATT--TTTTTTTG--GTTTAATAAATACCACCC--CATAAATGAATACCACCTTA-TCATC-CAGTCATACATAGTATTAAACAGTACCAAATCTATTTAGCTAAGA-GAAATTTACT---TGGGCTTGA-ATATGCTATCCTGGATGCTACACTGTGACTTCAGCCTAAGAAGTTTCCCCTGTCTGAAAAACCCTTGACTCTA--AC-TGGACAGCAATAGTAATACCTCT-----GTGCCAATTTCTAAAGAGGTTCCAGATTGCAAGACCcctcatgatc-tggccttgcacaattcttctgccctctattacttttagaactg i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21174324 899 - 190850796 TGAAGAAAAACCCTAAATT-----TTCTTTGAAAT-------TTTTGAATATCAAAATAGAAACAGTAG----ACCTAGCTTGCATACTGACT---AAAAATCAATGTCCTAAAATTGCTGAGTGCACTCAGAATTATTTGATATGCTGTCCAAACTTGTTTCTGAAAATATATTTCAGATGTGAGGTATAAGTCCCCAATTACTAATTTATC-CAAATTGCTAAATGTTTAGAAGACTTCAAAG---------taatttattta--aattaaaattttcattttattGAATGATTACTTTCTTTAATATTCATAA---CTTTTTATCTTAATTCTGAACTCATAACATTTGAAGTGCTATGATAATAATTATCTTACATTAACATGCTAATTTCTTCAAAGATTATATTCAACTGAAAC-ACTTAAGGTTTTAACCACTGTAGACTTAATTAGGTTAATTAAAATACGATTATA-TTTATTTTTACTTTATGAATGCTCCATTATCATATAATGACATTTATAATAGGAATAGAATTTATTACTTATTGAGCATACTTTTTTT--CTAAAACATTAATTTTATGATTAACTTCAT---AAAAAATTCATTAGGTGCATACCATGTGTGGTTTTACCTATATATTTTTTTA--GTTTAATAAATACCACCA--CATAAGCAAATACCAACTTA-TCTTC-CAGTCATAAGTAGTATTAAACACTGCTGAATCTATT----TAAGA-GAAATTTACT---TGTGCTCGA-ATGTGCTATGCTGGATGCGACACTGTGACTTCAGCCCAAGGAGTTTTCTCTGTCTGAAAAACACTTGACTTTA--AC-TGGACAGCAATAGTAATCTCTCT-----G-GTCAATTTCTAAGGAGGCTGCAGATTTCAAGACCCTTTGTGATA-TGACctttcacaactcttctgccctctattacttttagaactg i calJac3.chr3 C 0 C 0 s mm10.chr5 49155665 897 + 151834684 TAAAAATAAA-TTTATCTTAGTACTTTTTTAAAAAAAGAAACATTTGAAATGCAAAG-AGTAGTCCTAGGTATACATGACTTGTACACTGACTCCAAAAAACTTAAATGCTAACATAGCTTAATACACTCAGACATAATTTTAATTCTGCCCAAATCAATTCCTGAAAATCTATTCCAGAGATGACTTTTATGTATCGGGAAAGGAATTTATCAAAAAATGTAAAATAGT---AAGTTTTAAAAG---------TT----ATTTGTTTATTT-----TTCATTTTCTTGAATTCCTATTTGCTTTAATA-ACATA------TTTTCTCTAAACACTGAACTCA-----TTTGAGACACTATGATTATAATTATTTCACATTAATATGCTAATATCTTTAAAAAATATACCCAATTGAAAT-ACATAAGGCTTGAACCACTATAGACTTAATTAAGTTAATTAAAGTACGATTTCATTTTATTTTTACTATACAATTGCTCCATTATCATTTAATGGTTTTCATAATAAT-TTACAATATATGATCTGTTGAGTA---CTTCTGTT-CTAAAACATTAGTTTTATTGTTCAGTTCAT-TAAAAATATCAGTCAGCTGCACTCCTACTGAGGATTGGCCTGTT--TTTCTTTA--GTTGTGTGAAATCTACTC--TATGAACTACAACCAAATTA-TCATTGCAGTCATATAAAATGTTACGA---ACTAATTCCACT-AGCTGATATGGAGTTTGCTGACTTGCCTTGA-ATGTACTGTA-TGGATGTGATACTGAGATATCATTCAAGCAATTGAAAGCGATTTGAAGAGCATTCGG-TCTAGTAG-AGGACTGCAGTGTAAAC--CT---------GTAAACTGCTGAAGAATATAAAAACTGCATGACCACATATGACCTTGGCCTTGCTCATTGCTTCAGTCTGCCTTTATGTTAAAAGTTT i mm10.chr5 I 1457 C 0 s canFam3.chr3 3760349 904 - 91889043 -TGAAAATAA-TTTAAA-------ATCCTTGAAAA-------ATTTGGATATC-AAGTAGAAACATTAG----AACTGGCTTGCATACTGACT---CAAAACCAAAGT-CTAAAATTACTTAATGCACTCAAAATTATTTGAAAACCTGCCCAAAGCTGTTTCTGGAAATATATTTCAGAAGTGAATTATAAGTCTCTGATGAGTAATTTATC-AAAATTTTGAAAATTTTGGAAGACTTCAAAGTTATTTCTCTA----ATTTT--GATTA-----TTCATTTTATCAAATTACTACTTTCTTTAATA------ATACATTTTTCTCTAACCCTTGAATTTATGACATTTGAAGTACTATGATTATAATTATCTCATATTAATATGTTAATTTCTTCAGAAATTATACTCGATTGAAACACTTTAAGGTTTTAACCACTGTAGACTTAATTAGGTTAATTAATATACTATTGTGTTATATTTTTACTTTATGATTATCCCATTATCAT-TAATGATTTTGATAATAGCAATAGAATTTATTATTTATGAAGCATACTTTTTATG-CTAAAACATTAGTTTTATGGTTACCTTCATTATAAAAAATCAATCAGATACATATCCAGTGAGGTTTTGCCTATTTTTTTCTTTA--GTTTAATAAATTCTACTCTACACAAACTAATGTCAATCTATTCTTC-TATTGATAACCTGCATTATACACTGACAAATCTCTTTAGCTGAAA-GGAGTTTACT---TGTGCTTTATATATTCTTTGCTGGATGCTATCCTATGACCTTAGTC-AAGCAGTTTGGCGTGTCTGAAAAACCCTGGATTCTA--ACAAGGAAAGTAACAGCAAT--CTGTCTCAAATGTCAATTTCTAAAGA--CTGCAGATTTCAAGATCCTTCATGATC-TGGTCTGGCTTAACTCGTCTGCCC-CTATTACTTTTAGAGTTG i canFam3.chr3 C 0 C 0 a score=45833.000000 s hg38.chr4_KI270790v1_alt 55970 17 + 220246 CAATTCCAgctgcgcac s panTro4.chr4 21444215 17 + 193495092 CAATTCCAgctgcgcac i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21619990 17 + 198332218 CAATTCCagctgggcac i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20231855 17 - 85365473 caattccagctgggcac i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16698544 17 + 184069350 caattccagctgggtgc i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20740146 17 + 189454096 caattccagctgggtgc i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16336240 17 + 178775436 CAATtccagctgggtgc i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19823232 17 - 48547382 caattccagctgggtgc i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21175223 17 - 190850796 caattctggccgggtgt i calJac3.chr3 C 0 C 0 s mm10.chr5 49156562 17 + 151834684 TGATGTAAGGGATGCAC i mm10.chr5 C 0 I 839 e canFam3.chr3 3761253 0 - 91889043 C a score=840695.000000 s hg38.chr4_KI270790v1_alt 55987 310 + 220246 tgtggctcacccctgtaatcccagcacttttggaggctgaggtgggcagaccacctgaggtcaggtgttcgagaccagcctggccaatatagcaaaactctctctctactaaaagtaca-aaaaattaggcaggcattgtggcaggcacctgtaatcccagctacttgggaggctgaggtaggagaatcgcttgaacccaggaggcggaggttacagtgagccgagatcgcgccattgcattccagccggaataacaagagcgaaactccatct------------------taaaaacaaacaaacaaacaaacaaacaaaaaactgc s panTro4.chr4 21444232 302 + 193495092 tgtggctcacccctgtaatcccagcacttttggaggctgaggtgggcagaccacctgaggtcaggtgttcgagaccagcctggcgaatatagcaaaactctgtctctactaaaagtaca-aaaaattgggcaggcattgtggcaggcacctgtaatcccagctacttgggaggctgaggtaggagaatcgcttgaacccaggaggcggaggttacagtgagccgagatcgcgccatcgcattccagccggaataacaagagcgaaactccatct------------------taaaaacaaacaaacaaacaaa--------aaaCtgc i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21620007 306 + 198332218 tgtggctcacccctgtaatcccagcactttcggaggctgaggtgggcagaccacctgaggtcaggcgtttgagaccagcctggccaatatagcaaaacgctgtctctactaaaagtaca-aaaaattaggcaggcattgtggcaggcacctgtaatcccagctacttgggaggctgaggtaggaaaatcgcttgaacccgggaggtggaggctgcagtgagccgagattgcgccattgcattccagccggaagaacaagagcaaaactccatct------------------caaaaacaaacaaacaaataaa----caaaAAACtgc i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20231872 306 - 85365473 tgtggctcacccctgtaatcccagcactttcggaggctgaggtgggcagacaacgtgaggtcaggtgtttgagaccagcctggccaatatagcaaaactctgtctctactaaaagtaca-aaaaattaggcaggcattgtggcaggcacctgtagtcccagctacttgggaggctgaggtaggagaatcacttgaacccgggaggcagaggttgcagtgagctgagatcacgccattgcattccagccggaagaacaagagcaaaactccacct------------------caaaaacaaacaaacaaacaaa----caaaaaactgc i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16698561 300 + 184069350 tgtggctcacccctgtaatcccagcacttttggaggctgaggtgggcagaccacctgaggtcaggtgttcaagaccagcctggccaatacagcaaaactctgtctctacaaaaaataca-aaaaattaagcaggcattgtggcaggcacctgtaaccccagctacttgggaggctgaggcaggagaattgcttgaacccgggatgcagaggttgcagtgagccgagatcgcaccattgcattccagccagaagaataagagcaaaactccatct------------------caaaaacaaacaaacgaacaaa----------actgc i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20740163 300 + 189454096 tgtggctcacccctgtaatcccagcacttttggaggctgaggtgggcagaccacctgaggtcaggtgttcaagaccagcctggccaatacagcaaaactctgtctctacaaaaaataca-aaaaattaagcaggcattgtggcaggcacctgtaaccccagctacttgggaggctgaggcaggagaattgcttgaacccgggatgcagaggttgcagtgagccgagatcgcaccattgcattccagccagaagaataagagcaaaactccatct------------------caaaaacaaacaaacgaacaaa----------actgc i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16336257 301 + 178775436 tgtggctcacccctgtaatcccagcacttttggaggctgaggtgggcagaccacctaaggtcaggtgttcaagaccagcctggccaatacggcaaaactctgtctctactaaaaatacacaaaaaatagacaggcattgtggcaggcacctgtaaccctagctacttgggaggctgaggcaggagaatcacttgaacccaggatgtggaggttgcagtgagcggagattgcaccattgcattccagctggaagaataagagcaaaactccatct------------------caaaaacaaacaaacgaacaaa----------actGC i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19823249 318 - 48547382 tgtggctcacccctgtaatcccagcacttttggaggctgaggtgggcagaccacctgaggtcaggtgttcaagaccagcctggccaatacagcaaaactctgtctctacaaaaaataca-aaaaattaagcaggcattgtggcaggcacctgtaaccccagctacttgggaggctgaggcaggagaatcgcttgaacccgggatgtggaggttgcagtgagccgagatcgcaccattgcattccagctggaagaataagagcaaaactccatctcaaaaacaaacaaacgaacaaaaacaaacaaacgaacaaa----------actgc i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21175240 284 - 190850796 ggtggctcacacctgtaaccctagcactttgggaggccaagccaggtggcctacatgaggtcagaagac--agaccagcctggccaacatggtaaaaccatgtcgctactaaaaatata-aaaaattagccaggcatggtggcaggtgtctgtaattccagc-acttgggaggctgaggcaggagaatcacttgaacccaggaggcataggttgcggtgagccaagttcacaccattgcattaaa----gagcaacaagagcaaaactccatct------------------aaaaaaaaaa---------aga----------actgc i calJac3.chr3 C 0 C 0 e mm10.chr5 49156579 839 + 151834684 I e canFam3.chr3 3761253 0 - 91889043 C a score=447909.000000 s hg38.chr4_KI270790v1_alt 56297 127 + 220246 aattccataaatgcagtatattctttggtgcctctatgccgttgcacactctgcttcctctgctgcagctggcattctttgccttgaccacctagttagctccttcctctatttggaaattctgtcc s panTro4.chr4 21444534 127 + 193495092 aattccataaatgcagtatattctttggtgcctctatgccgttgcatactctgcttcctctgctgcagctggcattctttgccttgaccacctagttagctccttcctctatttggaaattctgtcc i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21620313 127 + 198332218 aattccataaacgcagtatattctttggtgcctctatgccgttgcacacactgcttcctccgctgcagctggcattctttgccttgaccacctaattagctccttcctctattcggaaattctgtct i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20232178 127 - 85365473 aattccataaatgcagtatattctttggtgcctctatgccgttgcacacactgtttcctctgctgcagctggcattccttgccttgaccacctagttagctccttcctctatttggaaattctgtcc i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16698861 127 + 184069350 aattccataaatgcaggatattctttggtacctctgtgccgttgcacacactgcttcctctgctgcagctggcattctttgccttgaccaccttgttagctctttcctctatttggaaattctgtcc i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20740463 127 + 189454096 aattccataaatgcaggatattctttggtacctctgtgccgttgcacacactgcttcctctgctgcagctggcattctttgccttgaccaccttgttagctccttcctctatttggaaattctgtcc i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16336558 127 + 178775436 AATTCCATAAATGCAGTATATTCTTTGGTACCTCTGTGCCATTGCACACACTGCTTCCTCTGCTGCAGCTGGCATTCTTTGCCTTGACCACCTCGTTAGCTCCTTCCTCTATTTGGAAATTCTGTCC i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19823567 127 - 48547382 aattccataaatgcagtatattctttggtgcctctgtgccgttgcacacactgcttcctttgctgcagctggcattctttgccttgaccaccttgttagctcctTCCTCTATTTGGAAATTCTGtcc i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21175524 127 - 190850796 aattccataaattcagtctattctttggtgcctctatgctgctgcacacactgcttcctctgaggcggctggcattctttgccttgatcacccagttagctcctccctctatttgaaaattctgtcc i calJac3.chr3 C 0 C 0 s canFam3.chr3 3761253 125 - 91889043 AATTGCATAAATACACTCTATTCTCTGGTGTCTCTATCCTTTCGCATGTACTCCTTCCTCTGCCATAGTTGTCATTCTTAAACTCGACCATCCATTTAGCTCCTTTCCATATCTGGAGAT--TGTTC i canFam3.chr3 C 0 C 0 e mm10.chr5 49156579 839 + 151834684 I a score=536135.000000 s hg38.chr4_KI270790v1_alt 56424 214 + 220246 agaagatacctT---------------TC--------ATTCCTGGTGTCATCATTTGGTATTTTCTCTTTTGCTTGTCTCTGC----TTCTG-----TCATCATGTGCTACATCCTGCTCTccatcatttactagtattcattttatgccagccactttactatt--cttacatatattctggagaattgttttagaaaact--cacaagtttaacattgttatccacattttagaagcaagaaaaacta s panTro4.chr4 21444661 214 + 193495092 agaagatacctT---------------TC--------ATTCCTGGTGTCATCATTTGGTATTTTCTCTTTTGCTTGTCTCTGC----TTCTG-----TCATCATGTGCTACATCCTGCTCTccatcatttactagtgttcattttatgccagccactttactatt--cttacatatattctggagaattgttttagaaaact--cacaagtttaacattgttatccacattttagaagcaagaaaaacta i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21620440 213 + 198332218 agaagatacctT---------------TC--------ATTGCTGGTGTCATCATTTGGTATTTTCTCTTTTGCTTGTCTCTGC----TTCTG-----TCATCATGTGCTACATCCTGTTCTCCATCACTTACTAGTGTTCATTTTATGCCAGCCACTTTACTATC--CTTACATATATTCTGGAGAATTGTTTTAGAACCCT--CACAAGTTTAAC-TTGTTATCCACATTTTAGAAGCAAGAAAAACTA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20232305 214 - 85365473 agaagatacctT---------------TC--------ATTCCTGGTGTCATCATTTGGTATTTTCTCTTTTGCTTGTCTCTGC----TTCTG-----TCATCATGTGCTACATCCTGTTCTccatcatttactagtgttcatgttatgccagccactttactatc--cttacatatattctggagaattgttttagaaaact--caccagtttaacattgttatccacattttagaagcaagaaaaACTA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16698988 214 + 184069350 agaagatacctt---------------tc--------agTCCTGGTGTCATCATTTGGTATTTTCTCTTTTGCTTGTCTCTGC----TTCTG-----TCATCATGTGCTACATCCTGTTTTccatcatttactagtgttcatttaatgccagccactttactatc--cttacatatattcttgagaattgttttagaaaact--caccagtttaacattgttatccacattttagaagcaagaaaaactg i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20740590 214 + 189454096 agaagatacctt---------------tc--------agTCCTGGTGTCATCATTTGGTATTTTCTCTTTTGCTTGTCTCTGC----TTCTG-----TCATCATGTGCTACATCCTGTTTTCCATCATTTACTAGTGTTCATTTAATGCCAGCCACTTTACTATC--CTTACATATATTCTTGAGAATTGTTTTAGAAAACT--CACAAGTTTAACATTGTTATCCACATTTTAGAAGCAAGAAAAACTG i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16336685 214 + 178775436 AGAAGATACCTT---------------TC--------AGTCCTGGTGTCATCATTtggtattttctcttttgcttgtCTCTGC----TTCTG-----TCATCATGTGCTACATCCTGTTCTCCATCATTTACTAGTGTTCATTTAATGCCAGCCACTTTACTATC--CTTACATATATTCTTGAGAATTGTTTTAGAAAACT--CACAAGTTTAACATTGTTATCCACATTTTAGAAGCAAGAAAAACTA i papAnu2.chr5 C 0 C 0 s calJac3.chr3 21175651 234 - 190850796 agaagatacctttcaggcaagcattTATC--------ATTCCTGGTGTCGTTATTCGGTATTTCCTCTTTTGCTTGTCTCTGCTATATCCTGTTGAATCACTGTGTGCTATATTCTGTTGTccaccatttactagtgttcattcaatgccagccactttactatt--cttac----attcttgagaattgttttagaaaact--cacaagtttaacattgttatccacattgtacaagcaagaaaaacta i calJac3.chr3 C 0 C 0 s canFam3.chr3 3761378 207 - 91889043 AGAAGATACTTT---------------CCATAGAAGAATTTCTCAT-TCTTTTCTTGGTACCATTCTTTTTGACTCTACTTGC----TTCCA-----AAATCATACGCTGCATATTGTATATCACCGTT-----------------TGCCAAACACTAAACCAGAGGCTTATGTATATTCATGAGAATTCTTCCTGAAAACTTCTACAAATTTAACATTGTTA-ACATATTTTAGAGGCAGAAAAAAAAA i canFam3.chr3 C 0 C 0 e mm10.chr5 49156579 839 + 151834684 I e chlSab2.chr27 19823694 0 - 48547382 C a score=184573.000000 s hg38.chr4_KI270790v1_alt 56638 104 + 220246 ------aactatttgttcactctggctaatgtgtagattattaagagttcaggccgggcgcggtggctcacgcctgtaatcccagcagtttgggagaacgaggtgggtgg s panTro4.chr4 21444875 104 + 193495092 ------aactatttgttcactctggctaatgtgtagattattaagagttcaggccgggcgcggtggctcacgcctgtaatcccagcagtttgggagaacgaggtgggtgg i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21620653 104 + 198332218 ------AACTATTTGTTCACTCTGGCTAATGTGTAGATTATTAAGAGTTCAggccaggtgcggtggcttacgcctgtaatcccagcactttgggagaacgaggtgggtgg i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20232519 104 - 85365473 ------TACTATTTGTTCACTCTGGCTAATGTGTAGATTATTAAGAGTTCAggccgggcacggtggctcacgcctgtgatcccagcagtttgggagaacgaggtgggtgg i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16699202 104 + 184069350 ------aactatttgttcactctggctaatgtgcagattattaagagttcaggtcaggcgcggtggctcacgcctgtaatcccagcactttgggagaacgaggtgggtgg i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20740804 104 + 189454096 ------AACTATTTGTTCACTCTGGCTAATGTGCAGATTATTAAGAGTTCAggtcaggcgcggtggctcacgcctgtaatcccagcactttgggagaacgaggtgggtgg i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16336899 104 + 178775436 ------AACTATTTGTTCACTCTGGCTAATGTGTAGATTATTAAGAGTtcaggtcaggcgcggtggttcacgcctgtaatcccagcaccttgggagaaccaggtgggtgg i papAnu2.chr5 C 0 C 0 s canFam3.chr3 3761585 36 - 91889043 AAGTTAACCTATTTGTTCATACTAGTTGATGGATGG-------------------------------------------------------------------------- i canFam3.chr3 C 0 C 0 e mm10.chr5 49156579 839 + 151834684 I e chlSab2.chr27 19823694 0 - 48547382 C e calJac3.chr3 21175885 0 - 190850796 C a score=190576.000000 s hg38.chr4_KI270790v1_alt 56742 108 + 220246 atcacgaagtcaggcattcaag-------accagccttgccaacatggtgaaaccctgtctctactaaagatacaaaaattagccgggcgtggtagcgggcacctgtaatcccag s panTro4.chr4 21444979 108 + 193495092 atcacgaagtcaggcattcaag-------accagccttgccaacatggtgaaaccctgtctctactaaagatacaaaaattagccgggcgtggtagcgggcacctgtaatctcag i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21620757 115 + 198332218 atcacgaggtcaggcattcaagaccagccaccagccttgccaagatggtgaaaccccgtctctactaaagatacaaaaattagccgggtgtggtagcgggcacctgtaatcccag i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20232623 108 - 85365473 atcacgaggtcaggcattcaag-------accagccttgccaagatggtgaaaccccgtctctactaaagatacaaaaattagccgggcgtggtagtgggcacctgtaataccag i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16699306 107 + 184069350 atcacgaggtcaggcattcaag-------accagccttgcaaagatggtgaaaccaggtctctactaaagatacaaaaattagccgg-tgtggtagcgggcacctgtaatcccag i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20740908 108 + 189454096 atcacgaggtcaggcattcaag-------accagccttgcaaagatggtgaaaccaggtctctactaaagatacaaaaattagccggttgtggtagcgggcacctgtaatcccag i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16337003 108 + 178775436 atcacgaggtcaggcattcaag-------accagccttgcaaagatggtgaaaccaggtctctactaaagatacaaaaattagctgggcatggtagtgggcacctgtaatcccag i papAnu2.chr5 C 0 C 0 e mm10.chr5 49156579 839 + 151834684 I e chlSab2.chr27 19823694 0 - 48547382 C e calJac3.chr3 21175885 0 - 190850796 C e canFam3.chr3 3761621 0 - 91889043 C a score=17402.000000 s hg38.chr4_KI270790v1_alt 56850 9 + 220246 ctacttagg s panTro4.chr4 21445087 9 + 193495092 ctacttagg i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21620872 9 + 198332218 ctacttagg i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20232731 9 - 85365473 ctacttagg i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16699413 9 + 184069350 ctaattggg i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20741016 9 + 189454096 ctaattggg i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16337111 9 + 178775436 ctaattggg i papAnu2.chr5 C 0 C 0 s canFam3.chr3 3761621 9 - 91889043 CTTCTTAGG i canFam3.chr3 C 0 C 0 e mm10.chr5 49156579 839 + 151834684 I e chlSab2.chr27 19823694 0 - 48547382 C e calJac3.chr3 21175885 0 - 190850796 C a score=210421.000000 s hg38.chr4_KI270790v1_alt 56859 132 + 220246 aggctgaggcagagaattgcctgaacccgggaggc---ggacgttgcagtgagccgagattgcgccactgcactccaacctgggtgacagagcgagactccgtctcaaaaa----aaaaaaaaaaaaaaaaaaaaaaga s panTro4.chr4 21445096 126 + 193495092 aggctgaggcagagaattgcctgaacccgggaggc---agacgttgcagtgagccgagattgcgccactgcactccaacctgggtgacagagcgagactccgtctcaaaaa----aaaaaaaaaaaaaaaa------ga i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21620881 135 + 198332218 aggctgaggcagagaattgcttgaacctgggacattaatgaggttgcagtgagccgagattgcgccactgcactccaacctgggtgacagagagagactccgtctcaaaaa----aaaaaaaaaaaaaaaaaaaaaaGG i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20232740 125 - 85365473 aggctgaggcagagaattgtttgaacctgggaggc---ggaggttgcagtgagccgagattgcaccactgcactccaacctgggtgacagagcgagactccgtctcaaaaa----aaaaaaaaaaaaaaa-------GA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16699422 133 + 184069350 aggctgaggcagagaattgcttgaacccgggaggc---cgaggttgcagtgatctgagactgcaccactgcactccagcctgggtgacagagtgagactccgtctcaaaagaaaaaaaaaaaaaaaaaaaaaaa---ga i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20741025 128 + 189454096 aggctgaggcagagaattgcttgaacccgggaggc---cgaggttgcagtgaactgagactgcaccactgcactccagcctgggtgacagagtgagactccgtctcaaaag-----aaaaaaaaaaaaaaaaaa---GA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16337120 129 + 178775436 aggctgaggcagagaattgcttgaacccgggaggc---tgaggttgcagtgagctgagattgtaccactgcactccagcctgggtgacagagcgagactccatcttaaagg----aaaaaaaaaaaaaaaaaaa---ga i papAnu2.chr5 C 0 C 0 e mm10.chr5 49156579 839 + 151834684 I e chlSab2.chr27 19823694 0 - 48547382 C e calJac3.chr3 21175885 0 - 190850796 C e canFam3.chr3 3761630 0 - 91889043 C a score=10696.000000 s hg38.chr4_KI270790v1_alt 56991 4 + 220246 gttc s panTro4.chr4 21445222 4 + 193495092 gttc i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21621016 4 + 198332218 GTTC i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20232865 4 - 85365473 GTTC i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16699555 4 + 184069350 gttc i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20741153 4 + 189454096 GTTC i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16337249 4 + 178775436 gttc i papAnu2.chr5 C 0 C 0 s canFam3.chr3 3761630 4 - 91889043 GTTC i canFam3.chr3 C 0 C 0 e mm10.chr5 49156579 839 + 151834684 I e chlSab2.chr27 19823694 0 - 48547382 C e calJac3.chr3 21175885 0 - 190850796 C a score=558859.000000 s hg38.chr4_KI270790v1_alt 56995 226 + 220246 atgctagctaaatgtgaat-----ttctcctgaattctacctaaggtctgtctgcttctaaagcccagtttttA-TATGCTCAGGTAA--------------------ATATTTGCTTGTTTCCAG--ACATATGACAAAACATGGGCATTAACAAAGGAGAAAAAGAAAAACGGA--GCAggagaga--gaaaataagagagactaagtaagaaatt-ttaaataatttaaatatggc----------atccacccttctactcagtg s panTro4.chr4 21445226 228 + 193495092 atgctagctaaatgtgaat-----ttctcctgaattctacctaaggtctgtctgcttctaaagcccagtttttA-TATGCTCAGGTAA--------------------ACATTTGCTTGTTTCCAG--ACATATGACAAAACATGGGCATTAACAAAGGAGAAGAAGAAAAACGGA--GCAggagagacagaaaataagagagactaagtaagaaatt-ttaaataatttaaatatggt----------atccacccttctactcagtg i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21621020 226 + 198332218 ATGCTAGCTAAACATGAAT-----TTCTTCTGAATTCTACCTAAGGTCTGTCTGCTTCTAAGGCCCAATTTTTA-TACGCTCAGGTGA--------------------ATATTTGCTTGTTTCCAGATATATATGACAAAGCATGGGCATTAACAAAGGAGAAGAAGAAAAAGGGA--GCAGGAGAGACAGAAAATA--AGAGACTAAGTAAGaaatt-ttaaataatttaaatatGGC----------ATC--CCCTTCTACTCAGTG i ponAbe2.chr4 C 0 I 316 s nomLeu3.chr20 20232869 230 - 85365473 ATACTAGCTAAACATGAAT-----TTCTCCTGAATTCTACCTAAGGTCTGTCTGCTTCTAAAGCCCAGTTTTTA-TATGCTCAGGTAA--------------------ATATTTGCTTGTTTCCAGACATATATGACAAAGCATGGGCATTAACAAAGGAGAAGAAGAAAAAGGGA--GCAggagagacagaaaataagagaaactaagtaagaaatt-ttaaataatttatatacggc----------atccacccttctactcagtg i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16699559 232 + 184069350 atgctagctaaacatgaat-----ctctcctgaattctacctaaggtctgtctgcttctaaagcccagtttttA-CATGCTCAGGTAA--------------------ATATTTGCTCGTGTCCAGACATTTATGATAAAGCATGGGCATTAACAAAGGAGAAGAAGAAAAAGGGAGCGCAGGAGAGAcagaaagtaagagagactaagtaagaaatg-ttaaataatttaaatatggc----------atccacccttctactcagtg i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20741157 232 + 189454096 ATGCTAGCTAAACATGAAT-----CTCTCCTGAATTCTACCTAAGGTCTGTCTGCTTCTAAAGCCCAGTTTTTA-CATGCTCAGGTAA--------------------ATATTTGCTCGTGTCCAGACATTTATGATAAAGCATGGGCATTAACAAAGGAGAAGAAGAAAAAGGGAGAGCAGGAGAGAcagaaagtaagagagactaagtaagaaatg-ttaaataatttaaatatggc----------atccacccttctactcagtg i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16337253 237 + 178775436 atgcTAGCTAAACATGAATCTTTCCTCTCCTGAATTCTGCCTAAGGTCTGTCTGCTTCTAAAGCCCAGTTTTTA-CATGCCCAGGTAA--------------------ATATTTGCTCGTGTCCAGACATTTATGATAAAGCATGGGCATTaacaaaggagaagaagaaaaagggagagcaggagagacagaaagtaagagagactaagtaagaaatt-ttaaataatttaaatatggc----------ATCCACCCTTCTACTCAGTG i papAnu2.chr5 C 0 C 0 s calJac3.chr3 21175885 231 - 190850796 atgctAGCTAAACATTAAT-----TTCTCCTGAATTCTACCTAAGGTCTATCTGGTTCTAAAGTCTAGTTTTTA-TATGTTCAAGTAA--------------------ATATTTGCTTGTTTCCAGATACATATGACAAAGCATGGGTGTTAACAagggagaagaagaaaaaggga--gagggagagacagaaaataagagagaCTAAGTAAAAAATTATGAAATAATTTCAATATGAC----------Acccacccttctactcagtg i calJac3.chr3 C 0 C 0 s canFam3.chr3 3761634 243 - 91889043 ATGTTACTTAAACATGAGT-----ACCT-CTAGATTCTATCCAAGGTC-GTCTGCTTCTAAAGCCCAGAATCTATTATATTTAGGTAAACAAACATGTAAACAAACATATATTTGTTTGATTCCAT--GTATGTAACTGAGAGAGGG----AATAAAGGAGGAAGAAAGAAAAgaa--gagggagagacagaaaat--gagtgattgag-aagaaggg--------atttaaatatggcagattctttaatacaccattctactcaaat i canFam3.chr3 C 0 C 0 e mm10.chr5 49156579 839 + 151834684 I e chlSab2.chr27 19823694 0 - 48547382 C a score=35344.000000 s hg38.chr4_KI270790v1_alt 57221 22 + 220246 gatgaatgaccaagac--tgcatt s panTro4.chr4 21445454 22 + 193495092 gatgaatgaccaagac--tgcatt i panTro4.chr4 C 0 C 0 s nomLeu3.chr20 20233099 24 - 85365473 gatgaataaccaagactgtgcatt i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16699791 24 + 184069350 gataaatgaccaagactgctcatt i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20741389 24 + 189454096 gataaatgaccaagactgctcatt i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16337490 24 + 178775436 GATAAATGACCAAGATTGCTCATT i papAnu2.chr5 C 0 C 0 s calJac3.chr3 21176116 24 - 190850796 ggtgaatgaccaagactgagcatt i calJac3.chr3 C 0 I 310 s canFam3.chr3 3761877 22 - 91889043 ggtgaatgaccaagaatgagtc-- i canFam3.chr3 C 0 C 0 e mm10.chr5 49156579 839 + 151834684 I e chlSab2.chr27 19823694 0 - 48547382 C e ponAbe2.chr4 21621246 316 + 198332218 I a score=168661.000000 s hg38.chr4_KI270790v1_alt 57243 86 + 220246 --------agaataaagcaaat---ctgctcatccgtgccatctcaacccctgggacctcatagaatgtgagtttcttccagttc-gagtataatgct s panTro4.chr4 21445476 86 + 193495092 --------agaataaagcaaat---ctgctcatccgtgccatctcaacccctgggacctcatagaatgtgagtttcttccagttc-gagcataatgct i panTro4.chr4 C 0 C 0 s nomLeu3.chr20 20233123 86 - 85365473 --------agaataaagcagat---ctgctcatccgtgccatctcaacccctgggatctcatagaatgtgagtttcttccagttc-gagtatactgct i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16699815 86 + 184069350 --------agaataaagcaaat---ctgctcatccgtgccatctcaactcccaggacctcatagaatgtgagtttcttctagttc-aagtataatgct i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20741413 86 + 189454096 --------agaataaagcaaat---ctgctcatccgtgccatctcaactcccaggacctcatagaatgtgagtttcttctagttc-aagtataatgct i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16337514 86 + 178775436 --------AGAATAAAGCAAAT---CTGCTTATCCGTGCCATCTCAACCCCAGGAACCTCATAGAATGTGAGTTTCCTGTAGTTC-AAGTATAATGCT i papAnu2.chr5 C 0 C 0 s calJac3.chr3 21176450 81 - 190850796 --------agaacaaagcaaat---ctgctcatccatgc-----caacccctgggacctcctaggatgtgagttttttccagttt-gagtataattct i calJac3.chr3 I 310 C 0 s canFam3.chr3 3761899 98 - 91889043 agcctgagagaagaatgtaattctgctgctcacctgtgtcatctcaatttctggaatctcacagaatatgagcatcttcttgtcctgagtataattct i canFam3.chr3 C 0 C 0 e mm10.chr5 49156579 839 + 151834684 I e chlSab2.chr27 19823694 0 - 48547382 C e ponAbe2.chr4 21621246 316 + 198332218 I a score=33260.000000 s hg38.chr4_KI270790v1_alt 57329 11 + 220246 agtatttaatc s panTro4.chr4 21445562 11 + 193495092 agtatttaatc i panTro4.chr4 C 0 C 0 s nomLeu3.chr20 20233209 11 - 85365473 agtatttaatc i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16699901 11 + 184069350 agtatttaatc i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20741499 11 + 189454096 agtatttaatc i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16337600 11 + 178775436 AGTATTTAATC i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19823694 11 - 48547382 agtatttaatc i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21176531 11 - 190850796 agtatttaatc i calJac3.chr3 C 0 C 0 s canFam3.chr3 3761997 11 - 91889043 attttttaatc i canFam3.chr3 C 0 C 0 e mm10.chr5 49156579 839 + 151834684 I e ponAbe2.chr4 21621246 316 + 198332218 I a score=445728.000000 s hg38.chr4_KI270790v1_alt 57340 137 + 220246 acatg----tgtttcttctacctcttggcaactgagggcaagcaaatgacttcgtct-------------------tgtactcagttaaagaaacagtgaccttttctgagcatgaaggtcatacatcccacactggactaactcaggggcagtccttct s panTro4.chr4 21445573 137 + 193495092 acatg----tgtttcttctacctcttggcaactgagggcaagcaaatgacttcgtct-------------------tgtactcagttaaagaaacagtgaccttttctgagcatgaaggtcatacatcccacactggactaactcaggggcagtccttct i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21621562 137 + 198332218 ACatg----tgtttcttctacctcttggcaactgagggcaagcaaatgacttcatct-------------------tgtgctcagttaaagaaacagtgaccttttctgagcatgaaggtcatatatcccacactggactaactcaggggcattccttct i ponAbe2.chr4 I 316 C 0 s nomLeu3.chr20 20233220 121 - 85365473 acatg----tgtttcttctacctcttggcaactgagggcaagcaaatgacttcatct-------------------tgtactcaGTTAAA----------------CTGAGCATGAATGTCATACATCCCACACTGGACTAACTCAGGGGCAGTCCTTCT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16699912 137 + 184069350 acatg----tgtttcttctatctcttggcaactgagggcaagcaaatgacttcatct-------------------tgtactcagttaaagaaacagtgaccttttctgagcatgaaggTCATATATCCCACACTCGACTAACGCAGGGGCAGTCCTTCT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20741510 137 + 189454096 acatg----tgtttcttctatctcttggcaactgagggcaagcaaatgacttcatct-------------------tgtactcagttaaagaaacagtgaccttttctgagcatgaaggTCATATATCCCACACTCGACTAACGCAGGGGCAGTCCTTCT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16337611 137 + 178775436 ACATG----TGTTTCTTCTACCTCTTGGCAACTGAGGGCAAGCAAACGACTTCATCT-------------------TGTACTCAGTTAAAGAAACAGTGACCTTTTCTGAGCATGAAGGTCATACATCCCACACCGGACTAACTCAAGGGCAGTCCTTCT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19823705 137 - 48547382 acatg----tgtttcttctacctcttggcaactgagggcaagcaaacgacttcatct-------------------tatactcagttaaagaaacactgaccttttctgagcatgaaggtcatacatcccacaccggactaactcaggggcagtccttct i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21176542 156 - 190850796 ccatg----tgtttattccacctcttggcaactgagggcaagggaatgacttcaccttactcaggcgaagtcattctgtactcagttaaagaaacagtgatctttcctgagcatgaaggtcatacgccccacgccagactgactcagaggcagtctctct i calJac3.chr3 C 0 C 0 s canFam3.chr3 3762008 139 - 91889043 --atgtccatttttttcccacctcttggcagccatggacaagacaatgacttcatct-------------------catattctaccaaagaaatggtgaactttttccaatgtggagATGATACACGCCAAGCTGGGGTAATTCAAACGTGGTCCCTCT i canFam3.chr3 C 0 C 0 e mm10.chr5 49156579 839 + 151834684 I a score=130743.000000 s hg38.chr4_KI270790v1_alt 57477 44 + 220246 --ctgtgatattgcaccttctt-aaagTA-------------------------------------------------------------------CATTTGTCTT--GCATACGG s panTro4.chr4 21445710 44 + 193495092 --ttgtgatattgcaccttctt-aaagTA-------------------------------------------------------------------CATTTGTCTT--GCATATGG i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21621699 44 + 198332218 --ctgtgatattgcaccttctt-aaagTA-------------------------------------------------------------------CATTTGTCTT--GCATACGG i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20233341 44 - 85365473 --CTGTGATATTGCACCTTCTT-AAAGTA-------------------------------------------------------------------CATTTGTCTT--GCATACGG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16700049 44 + 184069350 --CTGTGATATTGCACCTTCTT-AAACTG-------------------------------------------------------------------CATTTGTCTT--GCACACAG i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20741647 44 + 189454096 --CTGTGATATTGCACCTTCTT-AAACTG-------------------------------------------------------------------CATTTGTCTT--GCACACAG i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16337748 45 + 178775436 --CTGTGATATTGCACCTTCTTAAAACTA-------------------------------------------------------------------CATTTGTCTT--GCACACAG i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19823842 44 - 48547382 --ctgtgatattgcaccttctt-aaACTA-------------------------------------------------------------------CATTTGTCTT--GCACACAG i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21176698 44 - 190850796 --ctgtgatatcgcacctttgt-aaagTA-------------------------------------------------------------------AGTTTGTCTT--GCACATGG i calJac3.chr3 C 0 C 0 s mm10.chr5 49157418 41 + 151834684 --CTGCAATATCATATACTCTT-AAAGTA-------------------------------------------------------------------TATTTGTCTT-----TAGTG i mm10.chr5 I 839 C 0 s canFam3.chr3 3762147 115 - 91889043 CTCTTTAATGTCATAACTTCTT-AAAGTATCCTTATGTTCTGACTTAAGAATTCTACTCTTGgggatccctgggtggctcagcggtttaacgcctgcctttgcctttggcacaggg i canFam3.chr3 C 0 I 129 a score=6110741.000000 s hg38.chr4_KI270790v1_alt 57521 1780 + 220246 ATTTTAGAGA-------CCAATTGTTTTGCATGCTGCAGGTGCTTAACAAATATCAGTAGAATGACAGACTCGGTCAATAAATAAA--CGCTACTAC---TCAACATTTGTTTCTGCTCATAGAAGCCTAAA-TTTTTTTCGTGGTTTGTTTCTTGTCTCCAACTTAAAG-AAACTGACATTGGAGATTCTAAGAGATCAACTGATTTAAGACTGCTTCATATAAAGTATCT---TTTATGCGGTGAAAA-CCAAGAAGCATAAAAACCCACTGCTCTGCTGTATGAC-------AGTTCCCGTAGGTATAACATAAACCAAGGTCACATCAGCACTAAGCCAGAGCACAG-TATTTTGCATTTTCTGATAATGCAGAAAAACACACTTAAAGCCACAGTACTGTTTGAATAGAACACAAGTACAAGATGAGCCTACGAGTTCATCCAAAATAAATAAAACTACTGT-GGGGAAAAGTTGATTTATTAAATTTCTTTCATCCCAGAAGAATATATTAAGAATATTATTTATATCCTTTGCATATCTTCCTTCTAATTAGATTCCCTTGTGCCATGTTAAAAATTGATTTAATCTTATTTATTTATATCTTATTTGTAAACTGCTTGCTATGTAATCTATTAATTGCTGTTTCAATTAAATTCTATATATCCATTCATGCATTTGTTTATCCTCCCATGGATTGTTT--CTCATCATAACTCTACATTCAGAATTCTGGAGGCATTTACCCACTGGGAGCAACTACCCTCAAACACCTTGCTTTTTATTGCTGAAAACCCTTGTACTCTACTGAGAATAAA--CTACTGATACTCTCCATGTTCTCAGAGTAAATGGATAATTCAGTACA-GTTGAACACAATGTAATTCTAGGTTTTATTCTCCATAAATTGCCTTTTAGCATAGAGATAAAAACGTTATTTAACTAAATGTTTCCCTT-TATC-CTGACTCATGTAGCAGAACAAGAATATATAACACAGTAAAAATTCCTTTTGAAGAGTAGTTTTTTAGCTGATTTGGATGCTTTCCAATAAA---CTCAGTTTTTCAC---A--GAACGCTTAGGTAAGTAGGGAGATTCATTGAACATTACAACGAGAATTATCAATGGACCTTAACTACAGCTAAATATATAATTTCCAGTTGTAATA-TAGGTGTCCAAATATGTGTTGAAATAAAACATATTTACTTGTGTAGTTAAGGGGTAATGTCTATATACCACTGAATTTTACTAGCCATATCTATGAATTT-----TATCTAGAATACTTAAACAGTATCAGGGTTCTCAGTGTATGCGTTCTC-ATGTTT--GGAAAGAATAAGGAATGAATCtttactgagccatgaccttgagccagagactcttttaggccttatctatctcctttgatactaatactatcac--------------------------------g-tttgagtattattgac----ctatgttccaca--------------------------------------------------------------------------------taaagacacctcatctgggaacatttaaacac---------------aaggttacaatgttaataggtgacag-aaactac--atttagctctggatatgtcttgtttt-aaaaccagccttctttGTATACGAAAGTTTTGCTCAAGATATTTAAAAGAAAATTGTATTTTACAAAATGAAGAATC---CCTTGATGGGATTGCTT-AATATCAGCTAG---ATAAAATATTTTTA-AAAGTATACTACCGAATATTGTTGCATCAAAACTGTATTTGCCCAAGGGTGGCATGGAGAAAACACTCTCCTTTATGTGATTATCCAAAAATTTTCATACAAAGTAAACAAATGTTTAAAA-TGATCATTCTCAGCATTCTCCCAAATATTT------------TTACATTTG s panTro4.chr4 21445754 1780 + 193495092 ATTTTAGAGA-------CCGATTGTTTTGCATGCTGCAGGTGCTTAACAAATATCAGTAGAATGACAGACTCAGTCAATAAATAAA--CGCTACTAC---TCAACATTTGTTTCTGCTCATAGAAGCCTAAA-TTTTTTTCGTGGTTTGTTTCTTGTCTCCAACTTAAAG-AGCCTGACATTGGAGATTCTAAGAGATCAACTGATTTAAGACTGCTTCATATAAAGTATCT---TTTATGCGGTGAAAA-CCAAGAAGCATAAAAACCCACTGCTCTGCTGTATGAC-------AGTTCCTGTAGGTATAACATAAACCAAGGTCACATCAGCACTAAGCCAGAGCACAG-TATTTTGCATTTTCTGATAATGCAGAAAAACACACTTAGAGCCATAGTACTGTTTGAATAGAACACAAGTACAAGATGAGCCTACGAGTTCATCCAAAATAAATAAAACTACTGT-GGGGAAAAGTTGATTTATTAAATTTCTTTCATCCCAGAAGAATATATTAAGAATATTATTTATATCCTTTGCATATCTTCCTTCTAATTAGATTCCCTTGTGCCATGTTAAAAATTGATTTAATCTTATTTATTTATATCTTATTTGTAAACTGCTTGCTATGTAATCTATTAATTGCTGTTTCAATTAAATTCTATATATCCATTCATGCATTTGTTTATCCTCCCATGGATTGTTT--CTCATCATAACTCTACATTCAGAATTCTGGAGGCATTTACCCACTGGGATCAACTACCCTCAAACACCTTGCTTTTTATTGCTGAAAACCCTTGTACTCTACTGAGAATAAA--CTACTGATACTCTCCATGTTCTCAGAGTAAATGGATAATTCAGTACA-GTTGAACACAATGTAATTCTAGGTTTTATTCTCCATAAATTGCCTTTTAGCATAGAGATAAAAACTTTATTTAACTAAATGGTTCCCTT-TATC-CTGACTCATGTAGCAGAACAAGAATATATAACACAGTAAAAATTCCTTTTGAAGAGTAGTTTTTTAGCTGATTTGGACGCTTTCCAATAAA---CTCAGTTTTTGAC---A--GAACGCTTAGGTAAGTAGGGAGATTCATTGAACATTACAACGAGAATTATCAATGGACCTTAACTACAGCTAAATATATAATTTCCAGTTGTAATA-TAGGTGCCCAAACATATGTTGAAATAAAACATATTTGCTTGTGTAGTTAAGGGGTAATGTCTATATACCATTGAATTTTACTAGCCATATCTATGAATTT-----TATCTAGAATACTTAAACAGTATCAGGGTTCTCAGTGTATGCGTTCTC-ATGTTT--GGAAAGAATAAGGAATGAATCtttgctgagccatgaccttgagccagagactcttttaggccttatttatctcctttgatactaacactatcac--------------------------------g-tttgagtattattgac----ctatgttccaca--------------------------------------------------------------------------------taaagacacctcatctgggaacatttaaacac---------------aaggttacaatgttaataggtgacag-aaactac--atttagctctggatatgtcttgtttt-aaaaccagccttctttGTATACGAAAGTTTTGCTCAAGATATTTAAAAGAAAATTGTATTTTACAAAATGAAGAATC---CCTTGATGGGATTGCTT-AATATCAGCTAG---ATAAAATATTTTTA-AAAGTATACTACCGAATATTGTTGCATCAAAACTGTATTTGCCCAAGGGTGGCATGGAGAAAACACTCTCCTTTATGTGATTATCCAAAAATTTTCATACAAAGTAAACAAATGTTTAAAA-TGATCATTCTCAGCATTCTCCCAAATATTT------------TTACATTTG i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21621743 1773 + 198332218 ACTTTAGAGA-------CTGATTGTTTTGCATGCTGCAGGTGCTTAACAAATATCAATAGAATGACAGACTGAGTCAATAAATAAA--CGCTACTAC---TCAACATTTGTTTCTGCTCATAGAAGCCTAAA-TTTTTTTCGTGGTTTGTTTCTTGTCTCCAACTTAAAG-AGCCTGACATTGGAGATTCTAAGAGATCAACTGATTTAAGACTGCTTCATATAAAGTATCT---TTTATGCGGTGAAAA-CCAAGAAGCATAAAAATCCACTGCTCTGCTGTATGAC-------AGTTCCCGTAGGTATAACATAAACTAAGGTCACATCAGCACTAAGCCAGAGCACAG-TATTTTGCATTTTCTGATAATGCAGAAAGACACACTTAAAGCCACAGTACTGTTTGAATAGAACGCAAGTACAAGATGAGCCTACAAGTTCATCCAAAATAAATAAA---ACTGT-GGGGAAAAGTTGATTTATTAAATTTCTTTCATCCCAGAAGAATACATTAAGAATATTATTTATATCCTTTGCACGTCTTCCTTCTAATTAGATTCCCTTGTGCCATGttaaaaattgatttaatcttatttatttatattttatttGTAAACTGCTTGCTATGTAATCTATTAATT--TGTTTCAATTAAATTCTATATATCCATTCATGCATTTGTTTATCCTCCCATGGATTGTTT--CTTATCATAACTCTACATTCAGAATTCTGGAGGCATTTACCCACTGGGATTAACTACCCTCAAACACCTTGCTTTTTATTGCTGAAAACCCTTGTACTCTACTGAGAATAAA--CTGTTAATACTCTCCATGTTCTCAGAGTAAATGGATAATTCAGTACA-GTTGAACACAATGTAATTCTAGG-TTTATTCTCCATAAATTGCCTTTTAGCATAGAGATAAAAACTTTATTTAACTAAATGTTTCCCTT-TATC-CTGACTCATGTAGCAGAACAAGAATATATAACACAGTAAAAATTCCTTTTGAAGAGTAGTTTTTTAGCTGATTTGGACGCTTTCCAATAAA---CTCAGTTTTTGAC---A--GAACGCTTAGGTAAGTAGGGAGATCCATTGTACATTACAACGAGAATTATCAATGGACCTTAACTACAGCTAAATATATCATTTCCAGTTGTAATA-TAGGTGCCCAAATACATGTTGTAATAAAACATATTTACTTGTGTAGTTAAGGAGTAATGTCTATATGCCACTGAATTTTACTAGCAATATCTGTGAATTT-----TATCTAGAATACTTAAACAGTATTGGGGTTCTCAGTGTATGCATTCTC-ATGTTT--GGAAAGAATAAGGAATGAATCtttactgagccatgaccttgagccggagactcttttaggccttatttatctcctttgataccaacactatcac--------------------------------g-tttgagtattattgac----ctatgttccaca--------------------------------------------------------------------------------taaagacacctcatctgggaacatttaaacac---------------aaggttacaatgttaataggtgacag-aaactac--atttagctctggatatgtcttgtttt-aaaaccagccttctttGTATACGAATGTTTTGCTCAAGATATTTAAAAGAAAATTGTATTTTACGAAATGAAGAATC---CCTTGATGGGATTGCTT-AATATCAGCTAG---ATAAAATATTTTTA-AAAGTATACTACAGAATATTGTTGCATCAAAACTATATTTGCCCCAGGGTGGCATGGAGAAAACACTCTCCTTTATGTGATTATCC-AAAATTTTCATACAAAGTAAACAAATGTTTAAAA-TGATCATTCTCAGCATTCTCCCAAATATTT------------TTACATTTG i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20233385 1780 - 85365473 ACTTTAGAGA-------CCGATTGTTTTGCATGCTGCAGGTGCTTAACAAATATCAGTAGAATGACAGACTGAGTCAGTAAAAAAA--CGCTACTAC---TCAACATTTGTTTCTGCTCATAGAAGCCTAAA-TTTTTTTCGTGGTTTGTTTCTTGTCTCCAACTTAAAG-AGCCTGACATTGGAGATTCTAAGAGATCAACCGATTTAAGACTGCTTCATGTAAAGTATCT---TTTATGCGGTGAAAA-CCAAGAAGCATAAAAACCCACTGCTCTGCTGTATGAC-------AGTTCCTGTAGGTATAACATAAACCAAGGTCACGTCAGCACTAAGCCAGAGCACAA-TATTTTGCATTTTCTGATAATGCAGAAAAACACACTTAAAGCCACAGTACTGTTTGAATAGAACGTAAGTACAAGATGAGCCTACGAGTTCATCCAAAATAAATAAAACTACTGT-GGGGAAAAGTTGATTTATTAAATTTCTTTCATCCCAGAAGAATATATTAAGAATATTATTTATATCCTTTGCATGTCTTCCTTCTAATTAGATTCCCTTGTGCCATGTTAAAAATTGATTTAATCTTATTTATGTATATCTTATTTGTAAACTGCTTGCTACGCAATCTATTAATTTCTGTTTCAATTAAATTCTATATATCCATTCATGCATTTGTTTATCCTCCCATGGATTGTTT--CTCATCATAACTCTACATTCAGAATTCTGGAGGCATTTACCCACTGGGATCAACTACCCTCAAACACCTTGCTTTTTATTGCTGAAAACCCTTGTACTCTACTGAGAATAAA--CTACTGATACTCTCCATGTTCTCAGAGTAAATGGATAATTCAGTACA-GTTGAACACAATGTAATTCTAGGTTTTATTCTCCATAAATTGCCTTTTAGCATAGAGATAAAAACTTTATTTAACTAAATGTTTCCCTT-TATC-CTGACTCATGTAGCAGAACAAGAATATATA--ACAGTAAAAATTCCTTTTGAAGAGTAGTTTTTTAGCTGATTTGGACGCTTTTCAATAAA---CTCAGTTTTTGAC---A--GAACACTTAGGTAAGTAGGGAGATTCATTGAACATTACAATGAGAATTATCAATGGACCTTAACTACAGCTAAATATATCATTTCCAGTTGTAATA-TAGGTGCTCAAATATATGTTGTAATAAAACATATTTACTTGTGTAGTTAAGGGGTAATGTCTATATACCACTGAATTTTACTAGTAATATCTATGAATTT-----TATCTAGAATACTTAAACAGTATCAGGGTTCTCAATGTATGCGTTCTC-ATGTTT--GGAAAGAATAAGGAATGAATCTTTACTGAGCCATGATCTTGAGCCAGAGACTCTTTAAGGCCTTATTTATCTCCTTTGATACCAACACTATCAT--------------------------------G-TTTGAGTATTATTGAC----CTATGTTCCACA--------------------------------------------------------------------------------TAAAGACACCTCGTCTTGGAACATTTAAACAC---------------AAGGTTACAATGTTAATAGGTGACAGAAAACTAC--ATTTAGCTCTGGGTATGTCTTGTTTT-AAAACCAGCCTTCTTTGTATACAAAAGTTTTGCTCAAGATATTTAAAAGAAAATTGTATTTTACGAAATGAAGAATC---CCTTGATGGGATTGCTTAAATATCAGCTAG---ATAAAATGTTTTTA-AAATTATAATACTGAATATTGTTGCATCAAAATTATATTTGCCCAAGGGTGGCATGGAGAAAACACTCTCCTTTATGTGATTATCCAAAAATTTTCATACAAAGTAAACAAATGTTTAAAA-TGATCATTCTCAGCATTCTCCCAAATATTT------------TTACATTTG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16700093 1864 + 184069350 ACTTTAGAGA-------CCAACTGTTTTGCATGCTGCAGGTGCTTAACAAATATCAGTAGAATGACAGACTGAGTCAATAAATAAA--CGCTACTAC---TCAACATTTGTTTCTGCTCATAGAAGCCTACA-TTTTTTAAGTGGTTTGTTTCGTGTCTCCTACTTAGAATCTCCTGACATTAGAGATTCTAAGAGATCAAATGATTTAAGACTGCTTCATATAAAGTATCT---TTTATGGGGTGAAAA-CCAAGAAGCATAAAAACCCACAGCTCTTCTGTGTGAC-----ACAGTTCCCATAGGTATAACATAAACCAAGGTCACGCCAGCACTAAGCCAGAGCACAG-TATTTTGCATTTTCTGATAATACAGAAAAACACACTTAAAGCCACAGTACTGTTTGAATAGAACACAAGTACAAGATGTGCCTACGAGTTCATCCAAAGGAAATAAAACTACTGT-GGGGAAAAGTCAATTTATTAAATTTCTTTCATCCCAGAAGTATATATTAAGAATATTATTTATATCCTTTGCATGTCTTCCTTCTAATCAGATTCCCTTGTGCCACATTAAAAAATGATTTAATCTTATT----TATATCTTATTTGTAAACTGCTTGCTATGCAATCTATTAATTTCTGTTTCAATTAAATTCTATATATTCATTCATGCATTTGTTTATCCTCTCATGGATTGTTT--TTCATCATAACTCTACATTCAGAACTCTGGAGGCATTTACCCACTGGGATCAACTACCCTCAAACACGTTGCTTTTTGTTGCTGAAAACCCTTGTACTCTACTGAGAATAAACTCTATTGACACTCTCTGTATTCTCCGAGTCAATGGATAATTCAGTACA-GTTGAATACAATATCATTCTAGGTTTTATTCTCCAAAAATTGCCTTTTAGCATAGAGATAAAATCTTTATTTAGTTTAATGTTTCCCTC-TATC-CTGCCTCATGTAGCAGAACAAGAATACATAACACCGTAAAAATTCCTTTTGAAAAGTAGTTTTTTAGCTCATTTGGATGTTTTCCAATAAA---CTCAGTTTTTGAC---A--GAACGCTTAGGTAAGTAGAGAAATTCATTGAAGATTACAACAAGAACTATCAATGGACCTTAACTACAACTAAATATATTACTTCCAGTTGTAATA-TAGGTGCCCAAATATATGTTGTAGTAAAACATATTTACTTGTGTAGTTAAGGGGTAATGTCTATATACCAGTGAATTTTACAAGCAGTATCTGTGAATTT-----TATCTAGAATACTTAAACAGTATTGGGGTTCTCAATATATGAGTTCTC-ATGTGT--GGAAAGAATAAGGAATGAATCTTTACTGAGCCATGACCTTGAGCCAGAGACTCTTTTAGTTCTTATTTATCTCCCTTGATACCAACACTATCAC--------------------------------G-TTTGAGTATTATTGAC----CTATGTTCCACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAGACACCTCATCTGGGAAAGTTTAAACAc---------------aaggttacaatgttaataggtgacag-aaactac--atttagtcctgggtatgtcttgtttt-aaaaccagccttctttGTATAAGAAAGTTTTGCTTGAGATATTTAAAAGAAAATTGTATTTTATGGAATGAAGAATC---CCTTGATGGGATTGCTT-AATATCAGCTAGAAAAAAAAACATTTTTA-AAAGCATACTACTGAATAGTGTTGCATCAAAACTATATTTGCCCAAGCGCAGCATGGAGAAAACACTCTCCTTTATGTGATAATCCAAAAATTTTCATACGAAGTAAACGAATGTTTAAAA-TGATCATTCTCAGCATTTTCTCAAATATTT------------TTACATTTG i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20741691 1783 + 189454096 ACTTTAGAGA-------CCAACTGTTTTGCATGCTGCAGGTGCTTAACAAATATCAGTAGAATGACAGACTGAGTCAATAAATAAA--CGTTACTAC---TCAACATTTGTTTCTGCTCATAGAAGCCTACA-TTTTTTAAGTGGTTTGTTTCGTGTCTCCTACTTAGAATCTCCTGACATTAGAGATTCTAAGAGATCAAATGATTTAAGACTGCTTCATATAAAGTATCT---TTTATGGGGTGAAAA-CCAAGAAGCATAAAAACCCACAGCTCTTCTGTGTGAC-----ATAGTTCCCATAGGTATAACATAAACCAAGGTCACACCAGCACTAAGCCAGAGCACAG-TATTTTGCATTTTCTGATAATACAGAAAAACACACTTAAAGCCACAGTACTGTTTGAATAGAACACAAGTACAAGATGTGCCTACGAGTTCATCCAAAGGAAATAAAACTACTGT-GGGG-AAAGTCAATTTATTAAATTTCTTTCATCCCAGAAGTATATATTAAGAATATTATTTATATCCTTTGCATGTCTTCCTTCTAATCAGATTCCCTTGTGCCACATTAAAAAATGATTTAATCTTATT----TATATCTTATTTGTAAACTGCTTGCTATGCAATCTATTAATTTCTGTTTCAATTAAATTCTATATATTCATTCATGCATTTGTTTATCCTCTCATGGATTGTTT--TTCATCATAACTCTACATTCAGAACTCTGGAGGCATTTACCCACTGGGATCAACTACCCTCAAACACGTTGCTTTTTGTTGCTGAAAACCCTTGTACTCTACTGAGAATAAACTCTATTGACACTCTCTGTATTCTCCGAGTCAATGGATAATTCAGTACA-GTTGAATACAATATCATTCTAGGTTTTATTCTCCATAAATTGCCTTTTAGCATAGAGATAAAATCTTTATTTAGTTTAATGTTTCCCTC-TATC-CTGCCTCATGTAGCAGAACAAGAATATATAACACCGTAAAAATTCCTTTTGAAAAGTAGTTTTTTAGCTCATTTGGATGTTTTCCAATAAA---CTCAGTTTTTGAC---A--GAACGCTTAGGTAAGTAGAGAAATTCATTGAAGATTACAACAAGAACTATCAATGGACCTTAACTACAACTAAATATATTACTTCCAGTTGTAATA-TAGGTGCCCAAATATATGTTGTAGTAAAACATATTTACTTGTGTAGTTAAGGGATAATGTCTATATACCAGTGAATTTTACAAGCAGTATCTGTGAATTT-----TATCTAGAATACTTAAACAGTATTGGGGTTCTCAATATATGAGTTCTC-ATGTGT--GGAAAGAATAAGGAATGAATCtttactgagccatgaccttgagccagagactcttttagttcttatttatctcccttgataccaacactatcac--------------------------------g-tttgagtattattgac----ctatgttccaca--------------------------------------------------------------------------------taaagacacctcatctgggaaagtttaaacac---------------aaggttacaatgttaataggtgacag-aaactac--atttagtcctgggtatgtcttgtttt-aaaaccagccttctttGTATAAGAAAGTTTTGCTTGAGATATTTAAAAGAAAATTGTATTTTATGGAATGAAGAATC---CCTTGATGGGATTGCTT-AATATCAGCTAGAAAAAAAAACATTTTTA-AAAGCATACTACTGAATAGTGTTGCATCAAAACTATATTTGCCCAAGCGCGGCATGGAGAAAACACTCTCCTTCATGTGATAATCCAAAAATTTTCATACGAAGTAAATGAATGTTTAAAA-TGATCATTCTCAGCATTTTCTCAAATATTT------------TTACATTTG i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16337793 1783 + 178775436 ACTTTAGAAA-------CCAACTGTTTTGCATGCTGCAGGTGCTTAACAAATATCAGTAGAATGACAGACTGAGTCAATAAATAAA--CGCTACTAC---TCAACATTTGTTTCTGCTCATAGAagcctaaattttttttagtgGTTTGTTTCGTGTCTCCTACTTAGAATCTCCTGACATTAGAGATTCTAAGAGATCAAATTATTTAAGACTGCTTCATATAAAGTATCT---TTTATGGGGTGAAAA-TCAAGAAGCATAAAAACCCACTGCTCTTCTGTGTGAC-----ACAGTTCCCATAGGTATAACATAAACCAAGGTCACACCAGCACTAAGCCAGAGCAcag-tattttgcattttctgataATACAGAAAAACATACTTAAAGCCACAGTACTGTTTGAATAGAACACAAGTACAAGATGTGCCTATGAGttcatccaaaggaaataaaactacTGT-GGGGAAAAGTCgatttattaaatttctttcatcCCAGAAGtatatattaagaatattatttATATCCTTTGCATGTCTTCCTTCTAATCAGATTCCCTTGtgccacattaaaaaatgatttaatctTATT----TATACCTTATTTGTAAACTGCTTGCTATGCAATCTATTAATTTCTGTTTCAATTAAATTCTATATATCCATTCATGCATTTGTTTATCCTCTCATGGATTGTTT--TTCATCATAACTCTACATTCAGAATTCCGGAGGCATTTACCCACTGGGATCAACTACCCTCAAACACGTTGCTTTTTGTTGCTGAAAACCCTTGTACTCTACTGAGAATAAACTCTATTGACACTTTCTGTATTCTCAGAGTCAATGGATAATTCAGTACA-GTTGAATACAATGTCATTCTAGGTTTTATTCTCCATAAATTGCCTTTTAGCATAGAGATAAAATCTTTATTTAGTTTAATGTTTCCCTC-TATC-CTGCCTCATGTAGCAGAACAAGAATATATAACACAGTAAAAATTCCTTTTGAAAAGTAGTTTTTTAGCTCATTTGGATGTTTTCCAATAAA---CTCAGTTTTTGAC---A--GAACGCTTAGGTAAGTAGAGAAATTCATTGAAGATTACAACAAGAACTATCAATGGATCTTAACTACAACTAAATATATCACTTCCAGTTGTAATA-TAGGTGCCCAAATATACGTTGTAGTAAAACATATTTACTTGTGTAGTTAAGGGGTAATGTCTATATACCAGTGAATTTTACGAGCAATATCTGTGAATTT-----TATCTAGAATACTTAAACAGTATTGGGGTTCTCAATATATGAGTTCTC-ATGTGT--GGAAAGAATAAGGAATGAATCTTTACTGAGCCATGACCTTGAGCCAGAGACTCTTTTAGTTCTTATTTATCTCCCTTGATACCAACACTATCAC--------------------------------G-TTTGAGTATTATTGAC----CTATGTTCCACA--------------------------------------------------------------------------------TAAAGACACCTCATCTGGGAAAGTTTAAACAC---------------AAGGTTACAATGTTAATAGGTGACAG-AAACTAC--ATTTAGTCCTGGGTATGTCTTGTTTT-AAAACCAGCCTTCTTTGTATAAGAAAGTTTTGCTtgagatatttaaaagaaaattgtattttacgGAATGAAGAATC---CCTTGATGGGATTGCTT-AATATCagctag--aaaaaaacattttta-aaagcatactaCTGAATAGTGTTGCATCAAAACTATATTTGCCCAAGCGTGGCATGGAGAAAACACTCTCCTTTATGTGATAATCCAAAAATTTTCATACGAagtaaacaaatgtttaaaa-tgatcattctcagcattttctcaaatattt------------ttacatttg i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19823886 1808 - 48547382 ACTTTAGAGA-------CCAACTGTTTTGCATGCTGCAGGTGCTTAACAAATATCAGTAGAATGACAGACTGAGTCAATAAACGCA--CGCTACTAC---TCAACATTTGTTTCTGCTCATAGAAGCCTAAA-TTTTTTTAGTGGTTTGTTTCGTGTCTCCTACTTAAAA-AGCCTGACATTAGAGATTCTAAGAGATCAAATGATTTAAGACTGCTTCATATAAAGTATCT---TTTATGGGGTGAAAA-CCAAGAAGCCTAAAAACCCACTGCTCTTCTGTGTGAC-----ACAGTTCCCATAGGTATAACATAAACCAAGGTCACACCAGCATTAAGCCAGAGCACAG-TATTTTGCATTTTCTGATAATGCAGAAAAACACACTTAAAGCCACAGTACTGTTTGAATAGAACACAAGTACAAGATGTGCCTACGAGTTCATCCAAAGGAAATAAAACTACTGT-GGGGAAAAGTCGATTTATTAAATTTCTTTCATCCCAGAAGTATATATTAAGAATATTATTTATATCCTTTGCATGTCTTCCTTCTAATCAGATTCCCTTGTGCCACATTAAAAAATGATTTAATCTTATT----TATATCTTATTTGTAAACTGCTTGCTATGCAATCTATTAATTTCTGTCTCAATTAAATTCTATATATCCATTCATGCATTTGTTTATCCTCTCATGGATTGTTT--TTCATCATAACTCTACATTCAGAACTCTGGAGGCATTTACCCACTGGGATCAACTACCCTCAAACACGTTGCTTTTTGTTGCTGAAAACCCTTGTACTCTACTGAGAATAAACTCTGTTGACACTCTCTGTATTCTCCGAGTCAATGGATAATTCAGTACA-GTTGAATACAATGTCATTCTAGGTTTTATTCTCCATAAATTGCCTTTTAGCATAGAGATAAAATCTTTATTTAGTTTAATGTTTCCCTC-TATC-CTGCCTCATGTAGCAGAACAAGAATATATAACACAGTAAAAATTCCTTTTGAAAAGTAGTTTTTTAGCTCATTTGGATGTTTTCCAATAAA---CTCAGTTTTTGAC---A--GAACACTTAGGTAAGTAGAGAAATTCATTGAAGATTACAACAAGAACTATCAATGGACCTTAACTACAACTAAATATATCACTTCCAGTTGTAATA-TAGGTGCCCAAATATATGTTGTAGTAAAGCATATTTACTTGTGTAGTTAAGGGGTAATGTCTATATACCAGTGAATTTTACAAGCAATATCTGTGAATTT-----TATCTAGAATACTTAAACAGT-TTGGGGTTCTCAATATATGAGTTCTC-ATGTGT--GGAAAGAATAAGGAATGAATCTTTACTGAGCCATGACCTTGAGCCAGAGACTCTTTTAGTTCTTATTTATCTCCCTTGATACCAACACTATCACATTTTGAGTATTATTAACCTATATTGACCTATG-TTTGAGTATTATTGAC----CTATG----AGG--------------------------------------------------------------------------------TAAAGACACCTCATCTGGGAAAGTTTAAACAC---------------AAGGTTACAATGTTAATAGGTAACAG-AAACTAC--ATTTAGTCCTGGGTATGTCTTGTTTT-AAAACCAGCCTTCTTTGTATAAGAAAGTTTTGCTTGAGATATTTAAAAGAAAATTGTATTTTACGGAATGAAGAATC---CCTTGATGGGATTGCTT-AATATCAGCTAG--AAAAAAACATTTTTA-AAAGCATACTACTGAATAGTGTTGCATCAAAACTATATTTGCCCAAGTGCGGCATGGAGAAAACACTCTCCTTTATGTGATAATCCAAAAATTTTCATACGAAGTAAACAAATGTTTAAAA-TGATCATTCTCAGCATTTTCTCAAATATTT------------TTACATTTG i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21176742 1764 - 190850796 ACTTTAGAGA-------CCTACTCTTCTGCATGTTGCAGGTGTTTAACAGATATGAGTAGAACGACAGACTGAGTCAATAAAAAGA--CGCTACTAC---TCAACATTTGTTTCTGCTCATAGAAGCCTAAA-TTTTTT-AGTGGTGTGTATTTTGTCTGCAGCTTAAAG-AACCTGGCATTTGAGATTCTAAGAGATCAACTGATTTAAGACTGCTTTATATAAAGTATCT---TGTATGGGGTGAAAA-CCAAAAAGCATAAAAACCCGCTGCTCTGCTGTATGAC-------AGTTCCCATAGATATACCATATGCCAAAGTCACATCAGCACTAAGCCAGACCACAG-ACCATTGCATTTTCTGATAATGCAGAAAAATATGCTTAAAGCCACATTGCTGTTTGACTAGAACACAAGTAGAAGATGAGCCTACAAGTGAATCCAAAAGAAATAAAACTACTGTAGGGGAAAAATCAATTCATTAAATTTCTTTCATCACAGAAGAATATATTAACAATATTATTTATATCCTTTGCATGTCTTGCTTCTAATCAGATTGCCTTGTGCCATGATAAAAATTGATTTAATCTTACC----TATATCTTATTTGTACACTGCTTTTAATGTAACCTATTAATTTCTGTTTCAATTAAATTCTGTATATCCATTCACGCATTTGTTTATCCTCCCATGGATTGGTT--TACATCCTAACTCTACATTCAGAATTATTGAGGCCTTTACCCACCAGGATCAACTACCCTTAAACACCTTGTTTTTCATTCCTGAAAACCCTTGTACTCTACTGAGAATAAACTCGACTGATACTCTTTATATTCTCAGAGTCAATGCATAACTGAATATA-GCTGAATACAGTGTGATTCTAGGTTTTATTCTCCATAAATTGCCTTTTAGCATAGTGATAAAAACATTATTTAACCAAATGTTCTCCTT-TAAC-CTGACTCACGTAGCAGAACAGGAATATACAACACAGTAAAAGTT-CTTTTGAAATGTAATTTTTTAGCAAATT------CTTTT----------GTCAGTTTATGATGAAA--GAACTC-----TAAGTGGAGAGATTCATTGAACATTACAACAAAAATTATCAATGGACCTTAACTACAACTAAATACATTACTTCCA-TTGTAATA-TAAGTTCCCAAATATATGTTATAATAAAACATATTTACTTGTGTAGTTAAGAGGTAATGTCTGCATACCACTGACTTTTACTAGCAATATCTATGAATTT-----TATTTAAAATACTTAAACAGTATAGGGGTTCTTAATGTATGAGTTCAC-GTGATT--GGAAAGAATGAGGAACGAATCtttattgagccatgatcttgagccagagactcttttaggccttatttatctccc-tgataccaacactctcat--------------------------------gttttgagtatcactgac----ctatgttccaca--------------------------------------------------------------------------------taaagacacctcatctaggaaagtttaaacac---------------aaggtcacaatgttaataggtgactg-aaactac--atttagctctggatatgtcttgtttt-aaaatcagccttctttGTATAAGAAAATTTTGTTTAAGATATTTAAAAGAAAATTGTATTTTATAAAGTAAAGAATC---CCTTGATGGAATTGCTT-AGTATCAGCTAG--AAAAAAATATTTTTGTAAAGTACACTACTGAATATTGTTGCATCAAAAGTACATTTATCCAAAGATGACATGGAGTAAACACTCTCCTTTATGTGATTATGCAAAATGCTTCATACAAAGGAAATAAATGTTTAAAAGTAATCATTCTCAGCATTCTCCAAAACACTT------------TTAAATTTG i calJac3.chr3 C 0 C 0 s mm10.chr5 49157459 1582 + 151834684 ACTTTTTAAT-------ACAACTCATTTG---------GAGACTTAACCAATGTCTATAGATAGAAATGTTGAACTCAAACATAAATCTATTTCTAA---GCACCATTTGTTTCTGCTTATAAAATTGTTAT-TTATTTATTTAGTGTACTT------TTCAACTTACAT-AGTTCTATATCT-AGATTATTTGAAATAAACTATTCTAAATCTGGATCATACTAAATACTCAAATAAATATTCAAAAAG-CCAGGGAGCAT-AAAGCCCACTGCTCTACTTTTTAGCTTGAGATAGCCTCAATAAGCAGACCCTAAGCAAAAGCCACAGCGAGA-TAAGCTAAAACACAG-GGGTCTGCGTTTCTTTATAATGTAGAAAACTACAGTTAGTGACACAGT--------------------------------------------------------------------GA-----------------CAATTTC------------AATACATATTAA-----------AGTTCCATTGTATATCTTGATCCCAATCAGGTTTCCTGGTGTCATAAGGAGCATTGCTTTATTCCAATTTATCTATACCTTATTTGTAAACTGCCAATTATGCAGC---TTAATTTCTGTCTCAATTAGGTTACATATAGTAGTCTTGGTACTTTATGATCCT------AGATGTTTAGAAAACAACGATTCCATATTCATAATGCATGAGATAGTTGTAAGCTAATATAAACCACCTTCAATCACTTTGATTTTTATGTTAGAAACCTGCTGTATTATGCAGAAGGCAAAATCTGTTGAAACTCTGCA---TTTCATTATTTGTGGATAATTCAATACATGTAGAATACAATGACAATCTGGTTGCTATTCACCACAAGCCATTTTTCAGCTTATAAATGAAATCTTAATTTTACAAAATGTTTCCATC-TACCTTTGACTCATGTAGCAGGACAAGAATATGAAACACAAGAAAAATTACTTTTGAAAAGAAATGTTATAGCTACTTTGGCTTCTATCCAACAAAG--GTCCATTTCTGAC---ATGGGTGGTTTTGAGAACTA-------TTATTGTGCTTTGCAACAGTGATGGTCAACTGAAGCCTTTGACAAATAAATGCATTATTTCCAACATCAATAGTCAGCATCTAAGTCT-------------ACATTTTTCCCTGTA-----AATGGAACTAGATTATGCATCACTGACTTTTATCTGCAATAGCCATGGATTGCTGGATGCTTA----ACTTACAAAGAGCAGGAGAATTCAACATATGAGTTCAA-ATAAATAAAGGAGGAAATAGTAACAAATTGTT-TTTAGTGATGACCTTGA--TATGGGTTATTTTAGGACATATTTATTTCTCTTCGTATCCACAGTAATGC--------------------------------T-TTTAAATATTTGTGACTTATCTATCTTGTACA--------------------------------------------------------------------------------TAAAGACAGTTCTACTAAGATAGTGTGAACAC---------------C--------------------------TAGCCAA--GTGTAG---------TGTCTTTTTCTAAAAACCAGCTTTGGTTATGTAAGGAA-CATTAATCAAGATAT--------------------------TGAATAATT---C--TAATGAGGCT-----AATAACTCCTTA---AGA-------TTTA-AAG--AAACCATTTAGTATCACTGTATTCAGAATATATCTGACTTTGTTTGGCATTGAATCAACACACCCTTCTATCTAACTCTTTTAGATACTTTATGAAAATTAAATACTTGTTCCAAAGCAACCATTCTTCACATTTTCCCAAACTTCTCACTGAAAGGTGCTACATTTG i mm10.chr5 C 0 I 278 s canFam3.chr3 3762391 1773 - 91889043 atcttaaaaaaaagaaTTCTACTCTTTTgcacattgtaggtgctcaataattatatgtagaatga----ctgagtCAATAAATAAA--TGCTACTACTCATCAACATTTGCTTCTGCTCCTTCAAGCCTATA-TATTTTTTAGTGTTTTTTTCCT-TCACTAACTTAACA-GTCCT-ACATCGAAGATTCTAAGGGATCAACTGATTTAATGCTGTTCCATATAAAGTATGT---TTTATGAGGTGAAAGCCCAAGAAGCATGAAAACCCAGTGCATTGCTTTGCTGCTTATGATGGCTTCCCCAGGCATACCATAAGACAAGGTCACATCAGCACTAAGCCAGAACACAGTTGTCTTGTATCTTCTGATAGTATAGAAAAACCCACTTAAAGCCACAGTGCTGTCTGAGCATAACACAAGTATAAGATGAGCCTGCAAAAGTGTCTAAAAGAAAGAAAACTACTTT-GGAGAAAAGTTGACACATTAAATTTATTTCATGC---AAGAATACATTAAGAATATAATTTGCATCCTATGCATGTCTTGCTCCTATTCAGATTCTTTCAAGCCATGttaaatattaatttaatcttatttatttatatCTTATTTGTAAATAGTTTGCTATGCAACCTATTAATG--TACTTTAATTGAATTACATATATTCACTTATGTATTTGTTTATCTTCCCATGGATAAATT--TTTAGCACTGTTCCACATTTAGAATTCTGGATGCAGTGACCCCCTAGGATCAACTCTCCTCAACAACCCTGCTTTTCATTACTGAAAACTCTTACCCTATATTGAGGGCAAACCCAACTGACACTCTCCATATCCTCAAAGTCAATGGATAACTCAGTACATGTTGAACAAAATGACATGCTAGTTATTATT-TCTATACACTGGCCTTCAGCATGGAGATAAAAATGTGATTGAACTAAATGTTTCCATCTTACC-CTGACTCATATAGCAGGACAAGAATATATAACATAATAAGAATTACTTTTGAAAAATAATTTCTTAGCTAACATGGACCTTCTCCAATAGAGCTCACAGTTTCTGATGCAG--GAACTCTTAAATAAGTT--GAGGTCCATTACGTTTTACAA---GAATCATCGACCAACCCCAACTACAACTAAATGTGTCGTTTCCAATTATAATAATAATAGCCCGAATCTATGCTATAATAAAATATCTTTATTTGTATGGTAAAGTGACAATATCTATTTACCACAGAATTC---------------------------TATCTAGGTAACTTTACTTGTATAGGAATTCTAAATATATGAGTTCCCAATGGTT--GCAAAGAAAAAGGAATGAATCtttattgaggcttgaccttgagccaggaactcttttagtctttatttatctcacttagtatccacagtactcc--------------------------------c-tttgagtattattgcc----ctctgttgctca--------------------------------------------------------------------------------taaagaaacttcagtgcagaaagcttaaacacctcattcaaggttataacattataacattaacaggtgacag-aaacaacagatatgtctctagatatgtcttattgt-aaaactaaccttccttgcacGAGAAGGTTCTGATTAAGATTTCT--TTTTAAATACCTTCCTATAGAATGAAGAATTACACTTTGATGAGATT-----AATACTATCAGG-----AAATTATTTTTA-AAGGTAAACTAATAAATACTATTGAATAAAAACTATATTTTTCCTAGGTTGCCATGGGATAGATATTCTCTTCTATGCAATTGTGCAAAGTGTTTTCTGCGAAGTAATCAAACACTTAAAC----TTTTCCCCAACTTGTCCTC--------------------TCACAATCG i canFam3.chr3 I 129 C 0 a score=84244.000000 s hg38.chr4_KI270790v1_alt 59301 28 + 220246 CCATGCATACCATGCACACATTTAACAC s panTro4.chr4 21447534 28 + 193495092 CCATGCATACCATGCACACATTTAACGC i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21623516 27 + 198332218 CCATGCAT-CCATGCACACATTTAAAGC i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20235165 28 - 85365473 CCATGCATACCACGCACACATTTAAAGC i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16701957 28 + 184069350 CCATGCATACCATGCACACATTTAAAGC i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20743474 28 + 189454096 CCATGCATACCATGCACACATTTAAAGC i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16339576 28 + 178775436 ccATGCATACCATGCACACATTTAAAGC i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19825694 28 - 48547382 CCATGCCTACCATGTACACATTTAAAGC i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21178506 28 - 190850796 CCATGCATACCATGAGTACATTTAAATT i calJac3.chr3 C 0 C 0 s canFam3.chr3 3764164 19 - 91889043 ---------CCAAATACACATTTAAAGA i canFam3.chr3 C 0 C 0 e mm10.chr5 49159041 278 + 151834684 I a score=190824.000000 s hg38.chr4_KI270790v1_alt 59329 56 + 220246 ACACCATTACATCAAAGATGGTAAATGCCCAATCTTACTTCCCTCTCCTCTAG-AAA s panTro4.chr4 21447562 56 + 193495092 ACACCATTACATCAAAGATGGTAAATGCCCAATCTTACTTCCCTCTCCTCTAG-AAA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21623543 56 + 198332218 ACACCATTATATCAAAGATGGTAAATGCCCAATCTTATTTCCCTCTCCTCTAG-AAA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20235193 56 - 85365473 ACACCATTATGTCAAAGATGGTAAATACCCAATCTTACTTCCCTGTCCTCTAG-AAA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16701985 57 + 184069350 ACTCTATTACATCAAAGATGGTAAATTCCCAAGCTTACTTCCCTCTCCTCTAGAAAA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20743502 57 + 189454096 ACACTATTACATCAAAGATGGTAAATTCCCAAGCTTACTTCCCTCTCCTCTAGAAAA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16339604 57 + 178775436 ACATTATTACATCAAAGATGGTAAATTCCCAAGCTTACTTCCCTCTCCTCTAGAAAA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19825722 57 - 48547382 ACACTATTACATCAAAGATGGTAAATTCCCAAGCTTACTTCCCTCTCCTCTAGAAAA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21178534 56 - 190850796 ACACCAGTACATCAAAGATGGCAAACTCCCAAGCTTACATCTCTGTCCTCTAG-AAA i calJac3.chr3 C 0 C 0 s mm10.chr5 49159319 51 + 151834684 aTACTGTTACAT-AAAGACGGCAGTATTTCAACTT----TCCCTTTCCTCTAG-AAA i mm10.chr5 I 278 I 56 s canFam3.chr3 3764183 56 - 91889043 ACAGTCTTACGTTAAGGCTTGTGAACTCCCAACCTGTTTTTCTTTTCCTCTAG-AAA i canFam3.chr3 C 0 C 0 a score=77967.000000 s hg38.chr4_KI270790v1_alt 59385 27 + 220246 ATCATCTAGG-CATTTAGTCAACAAGTA s panTro4.chr4 21447618 27 + 193495092 ATCATCTAGG-CATTTAGTCAACAAGTA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21623599 25 + 198332218 ATCATCTAGG-CATTTA--TAACAAGTA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20235249 27 - 85365473 ATCATCTAGG-CATTTAGTAAACAAGTA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16702042 27 + 184069350 ATCATCTAGG-CGTTTAGTCAACAAGTA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20743559 27 + 189454096 ATCATCTAGG-CGTTTAGTCAACAAGTA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16339661 27 + 178775436 ATCATCTAGG-TGTTTAGTCAACAAGTA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19825779 27 - 48547382 ATCATCTAGG-CGTTTAGTCAACAAGTA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21178590 26 - 190850796 ATCATGTAGG-CATTTT-TCAACAAGTA i calJac3.chr3 C 0 C 0 s canFam3.chr3 3764239 28 - 91889043 ATCAACTCGACCACAGTGTCAACAAGTA i canFam3.chr3 C 0 C 0 e mm10.chr5 49159370 56 + 151834684 I a score=1275971.000000 s hg38.chr4_KI270790v1_alt 59412 318 + 220246 CCTTATACAATGTCAAGGGGAGCCATTAAA---AACATGGTATACAGAAATTGGATTTCCTTTCCTGAGTATTGCAACGAAGAATGGAAGAGAAAAGCCAGGCTGCTAGCATTTCTCCTTTTGTAAGGATGTGTCAGCCTATTCAGAGAACAAATGACCCAAGTCAATGAGTGTGCTGAGAGCTTATCCAGGAGAGCTGACACTCAACTTAAGCTAAACTTATAAACTGTAGTGCATGTTCAATTTATTTTATCTTCTGCATTTCACTCTGTCACTCCACTTGGTGACATTAAGTATAGCCTTGCAAAGGAAATAGTATCT s panTro4.chr4 21447645 318 + 193495092 CCTTATACAGTGTCAAGGGGAGCCATTAAA---AACATGGTATACAGAAACTGGATTTCCTTTCCTGAGTATTGCAACGAAGAATGGAAAAGAAAAGCCAGGCTGCTAGCATTTCTCCTTTTGTAAGGATATGTCAGCCTATTCAGAGAACAAATGACCCAAGTCAATGAGTGTGCTGAGAGCTTATCCAGGAGAGCTGACACTCAACTTAAGCTAAACTTATAAACTGCAGTGCATGTTCAATTTATTTTATCTTCTGCATTTCACTCTGTCACTCCACTTGATGACATTAAGTATAGCCTTGCAAAGGAAATAGTATCT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21623624 318 + 198332218 CCTTACACAGTGTCAAGGGGAGCCATTAAA---AACATGGTATACAGAAATTGGATTTCCTTTCCTGAGTATTGCAATGAAGAATGGAAGAGAAAAGCCAGGCTGCTAGCATTTCTCCTTTTGTAAGGATATGTCAGCCCATTCAGAGAACAAATGACCCAAGTCAATGAGTGTGCTGAGAGCTTATCCAGGAGAGCTGACACTCAACTTGAGCTAAACTTATAAACTGTAGTGCATGTTCAATTTATTTTATCTTCTGCATTTCACTCTGTCACTCCACATGATGACATTAAGTACAGCCTTGCAAAGGAAATAGTATCT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20235276 318 - 85365473 CCTTATACAGTGTCAAGGGGAGCCATTAAA---AACATGGTATACAGAAATTGGATTTCCCTTCCCGAATATTGCAATGAAGAATGGAAGAGAAAAGCCAGGCTTCTAGCATTTCTCCTTTTGTAAGGATATGTCAGCCCATTCAGAGAACAAAAGACCCAAGTCAATGAGTGTGCTGAGAGCTTATCCAGGAGAGCTGACACTCAACTTGAGCTAAACTTATAAACTATAGTGCATGTTCAATTTATTTTATCTTCTGCATTTCACTCTGTCACTCCACATGATGACATTAAGTATAGCCTTGCAAAGGAAGTAGTATCT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16702069 318 + 184069350 CCTTATATAGTGTGAAGGGGAGCCATTAAA---AACATGGTATACAGAAATTGGATTTCCTTTCCTGAGCATTGCAACGAAGAATGGAAGAGAAAAGGCAGGCTGCTAGCTTTTCTCCTTTTGTAAGGGTATGTCAGCCCATTCAGAGAACAAATGAGCCAATTCAATGAGTATGCTGAGAGCTTATCCACAAGAGCTGACAGTCAACTTGAGCTAAACTTATAAACTGTAGTGCATGTTCAATTTATTTTATCTTCTGCATTTCACTCTGTCACCCTGCACGATGACATTAAGTATAGCCTTGCAAAGGAAATAGTATCT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20743586 318 + 189454096 CCTTATACAGTGTGAAGGGGGGCCATTAAA---AACATGGTATACAGAAATTGGATTTCCTTTCCTGAGCATTGCAACGAAGAATGGAAGAGAAAAGGCAGGCTGCTAGCTTTTCTCCTTTTGTAAGGATATGTCAGCCCATTCAGAGAACAAATGAGCCAATTCAATGAGTATGCTGAGAGCTTATCCACAAGAGCTGACAGTCAACTTGAGCTAAACTTATAAACTGTAGTGCATGTTCAATTTATTTTATCTTCTGCATTTCACTCTGTCACCCCGCACGATGACATTAAGTATAGCCTTGCAAAGAAAATAGTATCT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16339688 318 + 178775436 CCTTATACAGTGTGAAGGGGAGCCATTAAA---AACATGGTATACAGAAATTGGATTTCCTTTCCTGAGCATTACGACGAAGAATGGAAGAGAAAAGGCAGGCTGCTAGCTTTTCTCCTTTTGTAAGGATATGTCAGCCCATTCAGAGAACAAATGAGCCAATTCAATGAGTATGCTGAGAGCTTATCCACAAGAGCTGACACTCAACTTGAGCTAAACTTATAAACTGTAGTGtatgttcaatttattttatcttctgcatttcactctgtcaccccgcaCGATGACATTAAGTATAGCCTTGCAAAGGAAATTGTATCT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19825806 318 - 48547382 CCTTATACGGTGTGAAGGGGAGCCATTAAA---AACATGGTATACAGAAATTGGATTTCCTTTCCTGAGCATTGCAACGAAGAATGGAAGAGAAAAGGCAGGCTGCTAGCTTTTCTCCTTTTGTAAGGATATGTCAGCCCATTCAGAGAACAAATGAGCCAATTCAATGAGTATGCTGAGAGCTTATCCACAAGAGCTGACACTCAACTTGAGCTAAACTTATAAACTGTAGTGCATGTTCAATTTATTTTATCTTCTGCATTTCACTCTGTCACCCCGAACGATGACATTAAGTATAGCCTTGCAAAGGAAATAGTATCT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21178616 307 - 190850796 TCTTATGCAGTGTCAAGGGGAGCCATTAAA---AATGTAGCATACAGAAATTGGATTTCCTTTCCTGAGCACTGCAATGTAGAATGGAAGAGAGAAGTCAGGCTGCTAGCATTTCTGCTTTTGTAAGGACATGTCAGCCCATTCAGAGAACAAATAATCCAATTCAATGAGTGTGCTGAGAACTTATCAATGAGAGCTGACACTCAACTTCAGCTAAACTTATAAACTGCAGTGCATGTTCAATTTATTTGATCGTCTGCATTTCACCCCA-----------GATGGCATTAAGTATAGCCTTCCAAAGGAAATAGCATCT i calJac3.chr3 C 0 I 3 s mm10.chr5 49159426 319 + 151834684 CCCTACATGTGGTCAGGAAGAGCTGTCAAGTTTTATCTGGGATACAAGAATTGAATTTTCTTTCCTCAACTTCACAATGAAGAACAGAAGGGAAAAGGCATGTTGATAAC--TCCTGCTTTTGTAAGGATATGTCAGCTTGTTCAGAGAACAAATGACCCAGTGGAATGAGTGTGTGGAGAGTTTATCTGGGAGGGTTGACACGCAGCTTGAGCTAAATTTATAAACTGTAATGTATGTTCAGTTTATTTTACCTTCTGCATTTCTCTCTGTCATCCTGAACATTGACATTAAATATAGGCCTGCTGAGTAAATAATATCC i mm10.chr5 I 56 C 0 s canFam3.chr3 3764267 315 - 91889043 CCTTATA--GTGTCAGGAGAGGCCATGGGA---GA-GGGTTATGAAAAAACTGGATTTCTTTTCTTGAGCATCACAGTGAAGAATGAGAGAGAAGAGGCAAACCGGTATCATCTGTGCTTTAATAAGGACATGTCAGTCCGTTCAGGGAGCAAAGGACCAGGTTCAATGAGTGCACTGAGAGCTTATCCATGAGAAATGACACTCAACCTGGGCTAAATTTATCAACTCTAGTGCACATTCAACTTATGTCATCTTCTGCATTTCACCCTGTCACCCTGCACGATGGCATTAAGTACAAACCTGCAGTGAAAATAATATCT i canFam3.chr3 C 0 C 0 a score=13914.000000 s hg38.chr4_KI270790v1_alt 59730 5 + 220246 ATTTC s panTro4.chr4 21447963 5 + 193495092 ATTTC i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21623942 5 + 198332218 ATTTC i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20235594 5 - 85365473 ATTTC i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16702387 5 + 184069350 ATTTC i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20743904 5 + 189454096 ATTTC i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16340006 5 + 178775436 ATTTC i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19826124 5 - 48547382 ATTTC i chlSab2.chr27 C 0 C 0 s mm10.chr5 49159745 4 + 151834684 ATTC- i mm10.chr5 C 0 C 0 s canFam3.chr3 3764582 5 - 91889043 GTTTC i canFam3.chr3 C 0 C 0 e calJac3.chr3 21178923 3 - 190850796 I a score=72724.000000 s hg38.chr4_KI270790v1_alt 59735 34 + 220246 TGAAAGGTTTAGGTGAAACATCATTATATTTCCA s panTro4.chr4 21447968 34 + 193495092 TGAAAGGGTTAGGTGAAACATCATTATATTTCCA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21623947 25 + 198332218 TGAAAGGTTTAGGTGAAACATCATT--------- i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20235599 25 - 85365473 TGAAAGGTTTAGGTGAAACATCATT--------- i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16702392 25 + 184069350 TGAAAGGTTTAGGTGAAACATCATT--------- i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20743909 25 + 189454096 TGAAAGGTTTAGGTGAAACATCATT--------- i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16340011 25 + 178775436 TGAAAGGTTTAGGTGAAGCATCATT--------- i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19826129 25 - 48547382 TGAAAGGTTTAGATGAAACATCATT--------- i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21178926 34 - 190850796 TGAAAGGTTTAGGTGAAACATCATTATATTTCCA i calJac3.chr3 I 3 T 37 s mm10.chr5 49159749 18 + 151834684 AAAAATGTTTATGCAAAA---------------- i mm10.chr5 C 0 C 0 s canFam3.chr3 3764587 21 - 91889043 TGAAATGTTTTTGTGAAATTC------------- i canFam3.chr3 C 0 C 0 a score=91.000000 s hg38.chr4_KI270790v1_alt 59769 1 + 220246 T s panTro4.chr4 21448002 1 + 193495092 T i panTro4.chr4 C 0 C 0 e mm10.chr5 49159767 0 + 151834684 C e chlSab2.chr27 19826154 0 - 48547382 C e macFas5.chr5 20743934 0 + 189454096 C e rheMac3.chr5 16702417 0 + 184069350 C e calJac3.chr3 21178960 37 - 190850796 T e canFam3.chr3 3764608 0 - 91889043 C e papAnu2.chr5 16340036 0 + 178775436 C e nomLeu3.chr20 20235624 0 - 85365473 C e ponAbe2.chr4 21623972 0 + 198332218 C a score=869756.000000 s hg38.chr4_KI270790v1_alt 59770 268 + 220246 TTCTGAAAGGTTTAGGTGAAACATCATTATATTTCCAAACAAAATGAAAACAAGCACCTTGGTAGAGGAACGGCATAAAAACAAACAAGCAGGAGG-----TCTGTTAT--TTTCAAGGGAATTGACAACTTGAGAAATTCACAGTTCTACATTTAAAATGTCTTTCTTTTTAGGAAAATTCCATGGCC---TCTTC---TGAAACATCTGGAAAAGACTATAGACATGTTCTTTGGATGCAAGTTATGGATCCAT-ACAAAACGTATTGATCCTTATATAA s panTro4.chr4 21448003 265 + 193495092 TTCTGAAAGGTTTAGGTGAAACATC---ATATTTCCAAACAAAATGAAAACAAGCACCTTGGTAGAGGAACGGCATAAAAACAAACAAGCAGGAGG-----TCTGTTAT--TTTCAAGGGAATTGACAACTTGAGAAATTCACAGTTCTACATTTAAAATGTCTTCCTTTTTAGGAAAATTCCATGGCC---TCTTC---TGAAACATCTGGAAAAGACTATAGACATGTTCTTTGGATGCAAGTTATGGATCCAT-ACAAAACGTATTGATCCTTATATAA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21623972 240 + 198332218 ----------------------------ATATTTCCAAACAAAATGAAAACAAGCACCTTGGTAGAGGAACGGCATAAAAACAGACCAGCAGGAGG-----TCTGTTAT--TTTCAAGGGAATTGACAACTTGAGAAATTCACAGTTCTACATTTAAAATGTCTTTCTTTTTAGGAAAATTCCATGGCC---TCTTC---TGAAACATCTGGAAAAGACTGTAGACATGTTCTTTGGATGCAAGTTATGGATCCAT-ACAAAACGTATTGATCCTTATATAA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20235624 242 - 85365473 ----------------------------ATATTTCCAAACAAAATGAAAACAAGCACCTTGGTAGAGGAACAGCATAAAAACAGACCAGCAGGAGG-----TCTGTTATAAATTCAAGGGAATTGACAAGTTGAGAAATTCACAGTTCTACATTTAAAATGTCTTTCTTTTTAGGAAAATTCCATGGCC---TCTTC---TGAAACATCTGGAAAAGACTATAGACATGTTCTTTGGATGTAAGTTACAGATCCAT-ACAAAATGTATTGATCCTTATATAA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16702417 240 + 184069350 ----------------------------ATATTTCCAAACAAAATGAAAACAAGCACCTTGGTAGAGGAACAGCATAAAAACAGACCAGCAGGAGG-----TCTGTTAT--TTTCAAGGGAATTGACAACTTGAGAAATTCACAGTTCTACGTTTAAAATGTCTTTCTTCCTAGGAAAATTCCATGGCC---TCTTC---TGAAACATCTGGAAAAGACTATAGACATGTTGTTTGGATGCAAGTTACAGACCCAT-ACAAAATGTATTGATACTTGTATAA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20743934 240 + 189454096 ----------------------------ATATTTCCAAACAAAATGAAAACAAGCACCTTGGTAGAGGAACAGCATAAAAACAGACCAGCAGGAGG-----TCTGTTAT--TTTCAAGGGAATTGACAACTTGAGAAATTCACAGTTCTACGTTTAAAATGTCTTTCTTCCTAGGAAAATTCCATGGCC---TCTTC---TGAAACATCTGGAAAAGACTATAGACATGTTGTTTGGATGCAAGTTACAGATCCAT-ACAAAATGTATTGATACTTGTATAA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16340036 240 + 178775436 ----------------------------ATATTtccaaacaaaagtaaaacaagcACCTTGGTAGAGgaacagcataaaaacagaccaGCAGGAGG-----TCTGTTAT--TTTCAAGGGAATTGACAACTTGAGAAATTCACAGTTCTAcgtttaaaatgtctttcttccTAGGAAAATTCCAAGGCC---TCTTC---TGAAACATCTGGAAAAGACTATAGACATGTTGTTTGGATGCAAGTTACAGATCCCT-ACAAAATGTATTGATACTTGtataa i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19826154 240 - 48547382 ----------------------------ATATTTCCAAACAAAATGAAAACAAGCACCTTGGTAGAGGAACAGCATAAAAACAGACCAGCAGGAGG-----TCTGTTAT--TTTCAAGGGAATTGACAACTTGAGAAATTCACAGTTCTATGTTTAAAATGTCTTTCTTCCTAGGAAAATTCCATGGCC---TCTTC---TGAAACATCTGGAAAAGACTATAGACATGTTGTGTGGATGCAAGTTACAGATCCAT-ACAAAATGTATTGATACTTGTATAA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21178923 264 - 190850796 TTCTGAAAGGTTTAGGTGAAACATCATTATATTTCCAAACAAAACAAAAACAACCACCTTGGTAGAGGAACAGCATAAAAACAGAGCAGCAGGAGG-----TTTGTTAT--TTTCAAGGGAATTGACAGCCTGAG-AATTCACAGCTCTACATTTAAAATGTCTTTCT---TAGGAAAATTCCATGGCC---TCTTC---TAAAACATCTGGAAAGGACTGTAGACACAGTTGTTGGATGCAGTTTGCTGATCCAT-ACAAAATGTATTGATCCTTGTACAC i calJac3.chr3 T 37 C 0 s mm10.chr5 49159767 236 + 151834684 --------------------------------TGCTTACCCAAATGAAAGTAAGCCCATTAGTAGGAAACCAGCACAATAGCATACCTTCGGGGGA-----CCCACTAA--TTTCAA-AAAATTAACAACTTGAGTAACTCACAATTCTACATTCAAAATGTCTTT-TTGTTATAACAACTCCATAGGCTTTTCTTC---TAAGAAGTTTGAAAGAGGCTGTAGTTAT-TCCCTTAGTTTCAAATTACTGGTCTCT-AACAAATTTACTGATCATTGTTCAA i mm10.chr5 C 0 I 3158 s canFam3.chr3 3764608 243 - 91889043 ------------------------CATTACATTCCTAAAC-AAATGAAAACAAGCACCTTGGT-GAGGAAAGGCCTAATAATAGACGTGCAGGAAGTTTACTTTGTTAT--TTTCAAGGGAAGTGATGACTTGAGTAATTCACAATTCTAAATTCAAACTGTCTTTCTTGTTAGAAAAATTCCATGGCC---CCCTCTGTTGAGAAATCCAGAAGAGAGTGTAAATGT-CCCTTTGGA-------CATTAATACATAACAAAATGTGCTAACCTTTGCACCA i canFam3.chr3 C 0 C 0 a score=1383867.000000 s hg38.chr4_KI270790v1_alt 60038 434 + 220246 -TAAAACCCACAATATTCGGGGGGAGGTAAAGAAGATAGGAAGGTAACGGATGAGAGTTT-GGCTACagtcatgcaaatctgggttttaattctgactttgccagtctcaagtctctgtagaatcgggaaaagtattttcaaagcctctgctccttcatctgtaaaatgaagataataaatagtacctattgtatctgcacagttattaaagggcttaaatcatagaatatacccaaaatgaagttttgcataatgcattctcaaagacattgttcagtacattttgactagcattattattTATATTATCACAGCTTGGTTCAGTCCCTCATCACTTCTCACTTGAAGAACTGCCTCCTTCAGTCAGTTCATACTAAACATTTGATCAAACTCATGTGATCCTGTCACTGTCTTAATTATTAACCTCTTACAAAT s panTro4.chr4 21448268 434 + 193495092 -TAAAACCCACAATATTCGGGGGGAGGTAAAGAAGATAGGAAGGTAACGGATGAGAGTTT-GGCTACagtcatgcaaatctgggttttaattctgactttgccagtctcaagtctctgtagaatcgggaaaagtattttcaaagcctctgctccttcatctgtaaaatgaagataataaatagtacctattgtatctgcacagttattaaaggtcttaaatcatagaatatacccaaaatgaagttttgcataatgcattctcaaagacattgttcagtacattttgactagcattattattTATATTATCACAGCTTGGTTCAGTCCCTCATCACTTCTCACTTGAAGAACTGCCTCCTTCAGTCAGTTCATACTAAACATTTGGTCAAACTCATGTGATCCTGTCATTGTCTTAATTATTAACCTCTTACAAAT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21624212 435 + 198332218 -TAAAACCCACAATATTCGGGGGGAGGTAAAGAAGATAGGAAGgtaatggaagagagtttgggctacagtcatgcaaatctgggttttaattctgactttgctagtctcaagtctctgcagaactgggaaaagtattttcaaagcctctgctccttcatctgtaaaatgaagataataaatagtatctattgtatctgcatagttattaaagggcttaaacgatagaatatacccaaaatgaagttttgcataatgcattctcaaagacattgttcagtacattttgactagcattattattTATATTATCACAGCTTGGTTCAGTCCCTCATCACTTCTCACTTGGAGAACTGCCTCCTTCAGTCTGTTCATACTAAACATTTGGTCAAATTTATGTGATCCTGTCATTGTCTTAATTATTAACCTCTTACAAAT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20235866 435 - 85365473 -TAAAACCCACAATATCTGGGGGGAGGTAAAGAAGATAGGAAGgtaatggatgagagtttgggctacagtcatgcaaatctgggttttaattctgactttgccagtctcaagtctctgtagaattgggaaaagtattttcaaagcctctgctccttcacctgtaaaatgaagataataaatagtacctattgtatctgcatagtttttaaagggcttaaatgatagaatatacccaaaatgaagttttgcataatgcattctcaaagacattgttcagtacattttgactagcattattattTATATTATCACAGCTTGGTTCAGTCCCTCATCATTTATCACTTGGAGAACTGCCTCCTTCAGTCCGTTCATACTAAACATTTGGTCAAACTTATGTGATCCTGTCATTGTCTTAATTATTAACCTCTTACAAAT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16702657 406 + 184069350 -TAAAAACCACAATATTTTGGGGGAGGTAAAGAAGATAGGAAGgtaatggatgagagtttgggctacagtcatgcaatttggggttcgaattcggactttgccagtctcaagtctctgtagaattgggaaaagtattttcaaagcctctgcttc-----------------------------tacctattatatctgcgtagttattaaagggcttaaatgatagaatatacccaaaatgaagttttgcataatgcattctcaaagacattgttcagtacattttgactagcattattattCATattatcacagcttggttcagtccctcatcatttctcacttggagaactgcCTCCTTCAGTCTGTTCATCCTAAACATTTGGTCAAACTTATGTGATCCTGTCATTGTCTTAATTATTAACCTCTTACAAAT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20744174 406 + 189454096 -TAAAAACCACAATATTTTGGGGGAGGTAAAGAAGATAGGAAGgtaatggatgagagtttgggctacagtcatgcaatttggggttcgaattcggactttgccagtctcaagtctctgtagaattgggaaaagtattttcaaagcctctgcttc-----------------------------tacctattatatctgcgtagttattaaagggcttaaatgatagaatatacccaaaatgaagttttgcataatgcattctcaaagacattgttcagtacattttgactagcattattattCATattatcacagcttggttcagtccctcatcatttctcacttggagaactgcCTCCTTCAGTCTGTTCATCCTAAACATTTGGTCAAACTTATGTGATCCTGTCATTGTCTTAATTATTAACCTCTTACAAAT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16340276 406 + 178775436 -taaaaaccacaatatTTTGGGGGAGGTAAAGAAGATAGGAAGGTAATGGATGAGAGTTTGGGCTACAGTCATGCAATTTGGGGTTCGAATTTGGACTTTGCCAGTCTCAAGTCTCTGTAGAATTGGGAAAAGTATTTTCAAAGCCTCTGCTTC-----------------------------TACCTATTATATCTGCGTAGTTATTAAAGGGCTTAAATGATAGAATATACCCAAAATGAAGTTTTGCATAATGCATTCTCAAAGACATTGTTCAGTACATTTTGACTAgcattattattcatattatcaCAGCTTGGTTCAGTCCCTCATCATTTCTCACTTGGAGAACTGCCTCCTTCAGTCTGTTCATCCTAAACATTTGGTCAAACTTATGTGATCCTGTCATTGTCTTAATTATTAACCTCTTACAAAT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19826394 406 - 48547382 -TAAAAACCACAATATTTTGGGGGAGGTAAAGAAGATAGGAAGGTAATGGATGAGAATTTGGGCTACAGTCATGCAATTTGGGGTTCGAATTCGGACTTTGCCAGTCTCAAGTCTCTGTAGAATTCGGAAAAGTATTTTCAAAGCCTCTGCTTC-----------------------------TACCTATTACATCTGCGTAGTTATTAAAGGGCTTAAATGATAGAATATACCCAAAATGAAGTTTTGCATAACGCATTCTCAAAGACATTGTTCAGTACATTTTGACTAGCATTATTATTCATattatcacagcttggttcagtccctcatcatttctcacttggagaactgcCTCCTTCAGTCTGTTCATCCTAAACATTTGGTCAAACTTATGTGATCCTGTCATTGTCTTAATTATTAATCTCTTACAAAT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21179187 433 - 190850796 -TAAAAACCACAATAATCTGGGGGTGGTAAAGAAGATAGGAAGGTAATGAATGAgactttgggctacagtcatgcaaatctgggtttgaattttgattttgccagtctcaag-ctatgtagaattgggaaaaatattttcaaagcctcagctccttcatctgtaaaatgaagataatgcatagtacctattatatctgtgtagttattaaagggcttaaatgatagaatgtactc-aaatgaagatttgcataatgcGTTCTCAAAAACGTTGTTCAGTACATTTTGACTAGCATTAATATTTATATTATCACAGTTCAGTTCAGTCCCTCATCATTTCTCACTTGGATAACTGCCTCCTTCAGTCTGTTCATCCTAAAAACTTGGTCAAACTTGTGTGATCCTGTCATTGTCTTAATTGTTAACCTCTTAGAAAT i calJac3.chr3 C 0 C 0 s canFam3.chr3 3764851 421 - 91889043 TCAGAGACAGCCGAATTTT--GAGATGGAAAGGAGACAGGAAtggaatggatgagagtttgggct--ggtaatgaaagtctaggttcaacttctggccttgccagttacaag-ccatgtgaatgtgggggaagtattttcaaggcttcagcttttacagttgtgaaacaaggataatagataatacctattacatgcaatcagttgttaaagggcttaaatgataggatgcactcaaagcCATGGTTTCCATGCAGCCTTTAAAATGGAATTGTTCAGTATATGTAGACTTTCATTATTCTTCCTATT------GTTTGGCTCAGACCTGCATC--CTCTCTCTTGGAGAACTGGCTCCTTCAGTTTGTCCATC--AAACACTTGACTAAACTTTTGTTTTCATGTCTTTCTCCTGTTCATTCACCTCTTACAATT i canFam3.chr3 C 0 I 228 e mm10.chr5 49160003 3158 + 151834684 I a score=353260.000000 s hg38.chr4_KI270790v1_alt 60472 105 + 220246 ACCCCCTATTTATACAGaatgtttttcaaactccaggtcatgatccattaatgggtcatgaacccaatttaatgatgagtcgagaccaaactt-aaaagaagaaag s panTro4.chr4 21448702 105 + 193495092 ACCCCCTATTTATACAGaatgtttttcaaactccaggtcatgatccattaatgggtcatgaacccaatttaatgatgagtcgagaccaaactt-aaaagaagaaag i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21624647 105 + 198332218 ACCCACTATTTAAACAGaatgtttttcaaacaccaggtcatgatccattaatgggtcatgaacccaatttaatgatgagtcgagaccaaactt-aaaagaagaaag i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20236301 105 - 85365473 ACCCACTATTTATACAGaatgtttttcaaactccaggtcatgatccattaatgggtcatgaacccaatttaatgatgagtcgagacagaactt-aaaagaagaaag i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16703063 99 + 184069350 ACCGACTATTTATACAGaatgtttttcaaactccaggtcatgatccattaatgggtcatgaacccaattta---atgagttgggaccaAACTT----AGAAGAAAG i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20744580 102 + 189454096 ACCAACTATTTATACAGaatgtttttcaaactccaggtcatgatccattaatgggtcatgaacccaattta---atgagttgggaccaaactt-aaaagaagaaag i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16340682 102 + 178775436 ACCGACTATTTATACAGAATGTTTTTCAAACTCCAGGTCATGATCCATTAATGGGTCATGAACCCAATTTA---ATGAGTTGGGACCAaactt-aaaagaagaaag i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19826800 102 - 48547382 ACCGAGTATTTATACAGaatgtttttcaaactccaggtcatgatccattaatgggtcatgaacccaattta---atgagttgggaccaaactt-aaaagaagaaag i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21179620 105 - 190850796 ACCCACTATTTATACAGGAtgtttttcaaactccaggtcataacccattaatgggtcataaatccaattgaatggtgattcaggaccaaactt-aaaagaagaaag i calJac3.chr3 C 0 C 0 s canFam3.chr3 3765500 106 - 91889043 ATCTACTATTTACAAATagtgtttttcacattctaggtcatgatccattaatgggttgagaagccaatttaatgATGAGTAAGGATGAGACTTTAAAAGAAGAgag i canFam3.chr3 I 228 I 187 e mm10.chr5 49160003 3158 + 151834684 I a score=89813.000000 s hg38.chr4_KI270790v1_alt 60577 32 + 220246 aataaaatggcatgactacatagggcatagaa s panTro4.chr4 21448807 32 + 193495092 aataaaacggcatgactacatagggcatagaa i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21624752 32 + 198332218 aataaaatggcatgactacatagggcatagaa i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20236406 32 - 85365473 aataaaatggCACGACTACGTAGGGCATAGAA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16703162 32 + 184069350 AATAAAATGTCATGACTGCATAGGTCATAGAA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20744682 32 + 189454096 aataaaatgtcatgactgcataggtcatagaa i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16340784 32 + 178775436 aataaaatgtcatGACTGCATAGGTCATAGGA i papAnu2.chr5 C 0 M 50 s chlSab2.chr27 19826902 32 - 48547382 aataaaatGTCATGACTGCATAGGTCATAGAA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21179725 32 - 190850796 aataaaagagcatGACTATATAGGGCATAGAA i calJac3.chr3 C 0 C 0 e mm10.chr5 49160003 3158 + 151834684 I e canFam3.chr3 3765606 187 - 91889043 I a score=62727.000000 s hg38.chr4_KI270790v1_alt 60609 56 + 220246 agatagaatagactacataaggcatagaa--gaatagaa-----tagaa-tagaatagaataga s panTro4.chr4 21448839 49 + 193495092 agatagaatagactacatagggcatagaa--gaatagaa-----tagaa-tagaata------- i panTro4.chr4 C 0 C 0 s nomLeu3.chr20 20236438 57 - 85365473 AGATAGAATAGACTACATAGGGCATAGAA--GAATACAA-----CAGAATTGGaatggaatgga i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16703194 61 + 184069350 GGATAGAATAGACTACATAGGGCATACAa--gaacagaatagagtagag-tagagtagagtaga i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20744714 56 + 189454096 ggatagaatagactacatagggcatacaa--gaacagaa-----tagag-tagagtagagtaga i macFas5.chr5 C 0 C 0 s chlSab2.chr27 19826934 56 - 48547382 GGATAGAATAGACTACATAGGGCATAGAA--GAACAGAG-----tagag-tagagtagagtaga i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21179757 47 - 190850796 Aaatggaatgga-----------atggaatggaatggaa-----tggaa-tggaatggaatgga i calJac3.chr3 C 0 C 0 e mm10.chr5 49160003 3158 + 151834684 I e canFam3.chr3 3765606 187 - 91889043 I e papAnu2.chr5 16340816 50 + 178775436 M e ponAbe2.chr4 21624784 0 + 198332218 C a score=11379.000000 s hg38.chr4_KI270790v1_alt 60665 58 + 220246 --------------------atag-aatagaatagaatggaatggaatggaatggaatggaatggaatggaatggaatg s nomLeu3.chr20 20236495 10 - 85365473 --------------------atgg-aataga------------------------------------------------ i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16703255 38 + 184069350 --------------------gtag-agtagagtagaatagaatagaatagaatagaata-------------------- i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20744770 38 + 189454096 --------------------gtag-agtagagtagaatagaatagaatagaatagaata-------------------- i macFas5.chr5 C 0 C 0 s chlSab2.chr27 19826990 28 - 48547382 --------------------gtag-agtagag----------tagagtagagtagaata-------------------- i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21179804 38 - 190850796 --------------------atgg-aatggaatggaatggaatagaatagaatagaata-------------------- i calJac3.chr3 C 0 C 0 s canFam3.chr3 3765793 58 - 91889043 atgaaactaaaaaaaaAAAAATAATAATATGATAAAATAAGAAAGAATGGAATGGGAT--------------------- i canFam3.chr3 I 187 C 0 e mm10.chr5 49160003 3158 + 151834684 I e papAnu2.chr5 16340816 50 + 178775436 M e ponAbe2.chr4 21624784 0 + 198332218 C e panTro4.chr4 21448888 0 + 193495092 C a score=170807.000000 s hg38.chr4_KI270790v1_alt 60723 86 + 220246 gaatggaatggaatggaatggaatggaatggaatggaatgggatgggatattgtcagagaatatgacacatagcaaaggtaaaaca s panTro4.chr4 21448888 71 + 193495092 ---------------gaatggaatggaatggaatggaatggaatgggatattgtcagagaatatgacacatagcaaaggtaaaaca i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21624784 86 + 198332218 gaatagaatagaatggaatggaatggaatggaatggaatagaatgagatattgtcagagaatatgacacatagcaaaggtaaaact i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20236505 44 - 85365473 ------------------------------------------aagagatattgtcagagaatatgacacatagcaaagataaaact i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16703293 86 + 184069350 gaatagaatagaatagaatagaatagaatagaatagaatagaatGAGATATTGTCAGAGAATATGACACACAGCAAAGGTAAAACT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20744808 86 + 189454096 gaatagaatagaatagaatagaatagaatagaatagaatagaatgagatattgtcagagaatatgacacacagcaaaggtaaaact i macFas5.chr5 C 0 C 0 s chlSab2.chr27 19827018 86 - 48547382 gaatagaatagaatagaatagaatagaatagaatagaatagaatgagatattgtcagagaatatgacacacagcaaaggtaaaact i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21179842 86 - 190850796 gaatagaatagaatagaatagaatagaatagaatagaatagaatgAGACATTGTCAGAGAACATGACACATAGCAAATGTAAAACT i calJac3.chr3 C 0 C 0 s canFam3.chr3 3765851 72 - 91889043 --------TAGAAT----TAGAATGGAA-GGACTggaatag-accagacactatcagagcacatcatgcatagtaggggtaaagat i canFam3.chr3 C 0 C 0 e mm10.chr5 49160003 3158 + 151834684 I e papAnu2.chr5 16340816 50 + 178775436 M a score=1463719.000000 s hg38.chr4_KI270790v1_alt 60809 454 + 220246 tatttttgaaatcatttattacaattagtatgtaca----------------tgtgtgtgtgctggactgtaatgt-aaaatatatgttcttactTACTAGGTAATATTCAAAGTCATCTGACAAGCATTGGGCAGGATGATGTCC-AACATTAATGCTCTGCTACTCATCTAGCCACTGACCCTGGTCACTCAATATTCAAGACCTAATGAATGGAAAGTGGAAG----ATGCATTTTGCCTTCCTTTTGCTTTTGAGATGAGGTAAGTGGTTTAGTATGATGGAAAGTGGAGTACAATAGGACTTTGATTTTATGAGTTGGTAATTTTTTTAACCTAATTTTCTGATTCAATAATAGAAATAAATATACTTTAGACTTTAAATGCTAATAATACCCCATCATTGCCCTTCCTATTCTATCTTCAGAAA----AAGTGAATATAATCATTACTGAAAGTATTATGCACAAAAAATAGGA s panTro4.chr4 21448959 449 + 193495092 tatttttgaaatcatttattacaattagtatgtac------------------gtgtgtgtgctggactgtaatgt-aaaatatatgttcttactTACTAGGTAATATTCAAAGTCATCTGACAAGCATTGGGCAGGATGATGTCC-AACATTAATGCTCTGCTACTCATCTAGCCACTGACCCTGGTCACTCAATATTCAAGACCTAATGAATGGAAAGTGGAAG----ATGCATTTTGCCTTCCTTTTGCTTTTGAGGTGAGGTAAGTGGTTTAGTATGATGGAAAGTGGAGTACAATAGGACTTTGATTTTATGAGTTGGTAATTTTTTTAACCTAATTTTCTGATTCAATAATAGAAATAAATATACTTTAGACTTTAAATGC---TAATACCCCATCATTGACCTTCCTATTCTATCTTCAGAAA----AAGTGAATATAATCATTACTGAAAGTATTATGCACAAAAAATAGGA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21624870 452 + 198332218 tatttttgaaatcatttattacaattagtatgtac------------------gtgtgtgtgctggactgtaatgt-aaaatatatgttcttactTACTAGGTAATATTCAAAGTCATCTGACAAGCATTGGACAGGATGATGTCC-AACATTAACGCTCTGCTACTCATCTAGCCACTGACCCTGGTCACTCAATGTTCAAGACCTAATGAATGGAAAGTGGAAG----ATGCATTTTGCTTTCCTTTTACTTTTGAGTTGAGGTAAGTAGTTCAGTATGATGGAAAGTGGAGTACAATAGGATTTTGATTTTATGAGTTGGTAATTTTTTTAACCTAATTTTCTGATTCAATAATAGAAATAAATATACTTTAGACTTTAAATGCTAATAATACCCCATCATTGCCCTTCTTATTCTATCTTCAGAAA----AAGTGAATATAATCATTATTGAAAGTATTATGCCCAAAAAATAGGA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20236549 454 - 85365473 tatttttgaaatcatttattacaattagtatgtaca----------------tgtgtgtgtgctggactgtaatgt-aaaatatatgttcttactTACTAGGTAATATTCAAAGTCATCTGACAAGCATTGGGCAGGATGATGTCC-AACATTAATGCTCTGCTACTCATCTAGCCACTGACCCTGGTCACTCAATGTTCAAGACCTAATGAATGGAAAGTGGAAG----ATGCATTTTGCCTTCCTTTTGCTTTTGAGGTGAGGTAAGTGGCTTAGTATGATGGAAAGTGGAGTACAATAGGATTCTGATTTTATAAGTTGGTAATTTTTTTAACCTAATTTTCTGATTCAATAATAGAAATAAATATATTTTAGACTTGAAATGCTAATAATACCGCATCATTGCCCTTCTTATTCTATCTTCAGAAA----AAGTGAATATAATCATTACTGAAAGTATTATGCACGAAAAATAGGA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16703379 458 + 184069350 TATTTTTGAAACAATTTATTACAATTAGTATGTAT------------------GTGTGTGTGCTGGACTGTAATGTAAAAAAATATGTTCTTACTTACTAGGTAATATTCAAAGTCATCTGACAAGCATTGGGCAGGGTGATGTCCAAACATTAATGCTCTGCTACTCATCTAGACACTGACCCTGGTCACTCAATGTTCAAAACCTAATGAATGGAAAGTGGAAG----ATGCATTTTGCCTTCCTTTTGCTTTTGAGGTGAGGTAAGTGGTTTATTATGATGGAAAGTGGAGTACAATAGGACTCTGATTTTATGAGTTGGTAATTTTTTTAACCTAATTTTCTGATTCAATAATAGAAGTAAATATACTATAGTCTTTAAATGCTAATAATGCCCCATCATTGCCCTTCTTATTCTATCCTCAGAAAAAGTAAGTGAATATAATCATTACTGAATGTATTATACATGAAAAATAGGA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20744894 457 + 189454096 tatttttgaaacaatttattacaattagtatgtat------------------gtgtgtgtgctggactgtaatgt-aaaaaatatgttcttactTACTAGGTAATATTCAAAGTCATCTGACAAGCATTGGGCAGGGTGATGTCCAAACATTAATGCTCTGCTACTCATCTAGACACTGACCCTGGTCACTCAATGTTCAAAACCTAATGAATGGAAAGTGGAAG----ATGCATTTTGCCTTCCTTTTGCTTTTGAGGTGAGGTAAGTGGTTTATTATGATGGAAAGTGGAGTACAATAGGACTCTGATTTTATGAGTTGGTAATTTTTTTAACCTAATTTTCTGATTCAATAATAGAAGTAAATATACTATAGTCTTTAAATGCTAATAATGCCCCATCATTGCCCTTCTTATTCTATCCTCAGAAAAAGTAAGTGAATATAATCATTACTGAATGTATTATACATGAAAAATAGGA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16340868 453 + 178775436 TATTTTTGGAACAATTTATTACAAttagtatgtat------------------gtgtgtgtgctggacTGTAATGT-AAAAAATATGTTCTTACTAACCAGGTAATATTCAAAGTCATCTGACAAGCATTGGGCAGGGTGATGTCCAAACATTAATGCTCTGCTACTCATCTAGACACTGACCCTGGTCACTCAATGTTCAAGACCTAATGAATGGAAAGTGGAAG----ATGCATTTTgccttccttttgcttttgagGTGAGGTAAGTGGTTTATTATGATGGAAAGTGGAGTACAATAGGACTCTGATTTTATtagttggtaatttttttaacctaattttCTGATTCAATAATAGAAGTAAATATACTATAGTCTTTAAATGCTAATAATGCCCTATCATTGCCCTTCTTATTCTATCCTCAGAAA----AAGTGAATATAATCATTACTGAATGTATTATGCATGAAAAATAGGA i papAnu2.chr5 M 50 C 0 s chlSab2.chr27 19827104 453 - 48547382 tatttttgaaacaatttattacaattagtatgtac------------------gtgtgtgtgctggactgtaatgt-aaaaaatatgttcttactTACTAGGTAATATTCAAAGTCATCTGACAAGCATTGGGCAGGGTGATGTCCAAACATTAATGCTCTGCTGCTCATCTAGACACTGACCCTGGTCACTCAATGTTCAAGACCTAATGAATGGAAAGTGGAAG----ATGCATTTTGCCTTCCTTTTGCTTTTGAGGTGAGGTAAGTGGTTTATTATGATGGAAAGTGGAGTACAATAGGACTCTGATTTTACGAGTTGGTAATTTTTTTAACCTAATTTTCTGATTCAATAATAGAAGTAAATATACTATAGTCTTTAAATGCTAATAATGCCCCATCATTGCCCTTCTTATTCTATCCTCAGAAA----AAGTGAATATAATCATTACTGAACGTATTATGCATGAAAAATAGGA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21179928 397 - 190850796 TATTTTTGATTTCATTTATTACAATTAGTATGTAC------------------ATGTGTGTGCTGGACTGTAATAT-AAAATATATGTTGTTACTTACTAGGTAATATTCAAAGTCATCTGACAAGCACTGGGCAGAATGATGTCTAAACATTAATGCTCTGCTACTTATCCAGCCACTGACCCTGGTCACTCAATGTTCAAGATCTAATAAATGGAAAGTGGAAGGAACACGCATTTTGCCTTCC-TTTGCTTTTGAGGTGAGGTAAGTGGTTTAGTATGATGGAAAGTGGAGTACAATAGGACTC-----------------------------------------------------------TATACTTTAGACTTCAAATTCTAATAATACCGTATCATTGCCCTTCCTATTCTAGCCTCAGAAA----AGGTGAATGTAATCATTACTGAATGCATTATGCACCAAAAATAGGA i calJac3.chr3 C 0 C 0 s canFam3.chr3 3765923 456 - 91889043 tattgttgaaacctcttgctacagttaGTGAGTACACgtatgtgtgtgtgtgtgtgtgtatgCTGACTTTTAATGT-AAAATACATTTTCTTATTAA-----------TCAAAAACATCTGAGAAGCACTGGACAGGATGATACCCAAATTTTAAAGCTTTACTATCCATATGGCAATCAGTCTTGGCTACTCTAGGCTCACGACCCACCGAATAGGAAGTGAACA--TCACACATTTTGTCTCCC----ACTTTTGAAGTGCGATAAGCAGTTTAGTATGATAGGAACTAGAGTATAATAAGACTATGATTGGATACGTTAGTGATTTTATTTCCTAAATTTACTGGCTCATTAATGGAAATGTATATAATTTAGAGTTCAAATGTTAACCGTACCATATCATGGCTCTTCCCACTCGAGTCCCACAGA----AAAGGAATATAATCATTGCTGAATATATTATGTGCCAAGAATAG-- i canFam3.chr3 C 0 C 0 e mm10.chr5 49160003 3158 + 151834684 I a score=404899.000000 s hg38.chr4_KI270790v1_alt 61263 110 + 220246 TCAGAAATACAAGTTTAAAAATTTCTGTGACCTGAGATTTTTGTGTACATATTAGAATAGTAT-TTTTCCATTTATTGAGTTAAAATGTTTCTTTAT-GCAAATACCTTTTC s panTro4.chr4 21449408 110 + 193495092 TCAGAAACACAAGTTTAAAAATTTCTGTGACCTGAGATTTTTGTGTACATATTAGAATAGTAT-TTTTCCATTTATTGAGTTAAAATGTTTCTTTAT-GCAAATGCCTTTTC i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21625322 110 + 198332218 TCAGAAATACAAGTTTAAAAATTTCTATGACCTGAGATTTTTGTGTACATATTAGAATAATAT-TTTTCCATTTATTGAGTCAAAATGTTTCTTTAT-GCAAATGCCTTTTC i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20237003 111 - 85365473 TCAGAAATACAAGTTTAAAAATTTCTGTGACCTGAGATTTTTGTGTACATATTGGAATAAAATGTTTTCCATTTATTGAGTTAAAATGTTTCTTTAT-GCAAATGCCTTTTC i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16703837 111 + 184069350 TCAGAAATACAAGTTTAAAAATTTCTGTGATCTGAGATTTTTGTGTACATATTAGAATAATATTTTTTCCATTTATTGAGTTAAAATGTTTCTCTAC-ACAAATGTCTTTTC i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20745351 111 + 189454096 TCAGAAATACAAGTTTAAAAATTTCTGTGATCTGAGATTTTTGTGTACATATTAGAATAATATTTTTTCCATTTATTGAGTTAAAATGTTTCTCTAC-ACAAATGTCTTTTC i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16341321 111 + 178775436 TCAgaaatacaagtttaaaaattTCTGTGATCTGAGATTTTTGTGTACatattagaataatattttttccatttattgagtTAAAATGTTTCTCTAC-Acaaatgtcttttc i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19827557 111 - 48547382 TCGGAAATACAAGTTTAAAAATTTCTGTGATCTGAGATTTTTGTGTACATATTAGAATAATATTTTTTCCATTTATTGAGTTAAAATGTTTCTCTAC-ACAAATGTCTTTTC i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21180325 111 - 190850796 TCAGAAATAAAAGTTTAAAAATTTCTGTGACCTGGGATTTTTGTGTATATATTAGAAAAATATTTTTTCCATTTATTGATTTAAAATGTTTCTCTAC-ACATATGCCTTTTC i calJac3.chr3 C 0 C 0 s mm10.chr5 49163161 105 + 151834684 TCAGAAATAAATATTTAAAA--TTATGTG-CCTAAAACTTTTGAGTAAATATT---ACAATGT-TTTTTCTTTTATTAGATGAAAATATTTCTCTACAACAAACACATTTTT i mm10.chr5 I 3158 C 0 s canFam3.chr3 3766379 108 - 91889043 -CCCACAAAGCAGTTTAAAAATTTCAGTGACCTGGAATTTCTTTGTA-ATTTTAGAATAATGA-TTTTACATTTGTTAGATGAAAATATTTATATAC-AGAGATGCAttttc i canFam3.chr3 C 0 I 230 a score=1650286.000000 s hg38.chr4_KI270790v1_alt 61373 460 + 220246 AAACAAAGACATTTCCAACACAAATCCATGAATCCAACTTATAAATAAACTATGAACACTGGACACAATGCATGCAAACAGGACATCTGGAATGAAAATGC-ACCCTCCTGAGATAACTAGGAAGCCTCCATTTTACATTTAGCTAGTCACTCAAGCATGAA-G----TAGTCTTTTGGGAAGAATGAGAAGAAAGAGGATCAAATATGTTAAAAC-TAATGTGTGCACCCATCCT-AGATCATAGCATTT-TTAGTTTCAAAGATTCTCATTGC--CTTTCTC-------------------------------------------ACACTAG------------------CAATGCTCATAA---ATCGGGC----------------CTTTAACTAAAAATCCACAACTGCCCTAATTCTAAGTGGTAAGAGAGAACTCAAATGCAAA-ATCAGACTCATGTCCATGCTTATAATGTTTCCATTTCCCCTTTGAAG------------------AAAACCGCCCTC----------AGTAAAACCAAAAGTGAATTTTAGTGCAT-ATCCATCATCTT s panTro4.chr4 21449518 460 + 193495092 AAACAAAGACATTTCCAACACAAATCCATGAATCCAACTTATAAATAAACTATGAACACTGGACACAATGCATGCAAACAGGACATCTGGAATGAAAATGC-ACCCTCCTGAGATAACTAGGAAGTCTCCATTTTACATTTAGCTAGTCACTCAAGCATGAA-G----TAGTCTTTTGGGAAGAATGAGAAGAAAGAGGATCAAATATGTTAAAAC-TAATGTGTGCACCCATCCT-AGATCATAGCATTT-TTAGTTTCAAAGATTCTCATTGC--CTTTCTC-------------------------------------------ACACTAG------------------CAATGCTCATAA---ATCGGGC----------------CTTTAACTAAAAATCCACAACTGCCCTAATTCTAAGTGGTAAGAGAGAACTCAAATGCAAA-ATCAGACTCATGTCCATGCTTATAATGTTTCCATTTCCCCTTTGAAG------------------AAAACCGCCCTC----------AGTAAAACCAAAAGTGAATTTTAGTGCAT-ATCCATCATCTT i panTro4.chr4 C 0 I 264 s ponAbe2.chr4 21625432 443 + 198332218 AAACAAAGATATTTCCAACACAAATCCATGAATCCAACTTATAAATAAACTATGAACACTGGATACAATGCATGCAAACAGGACATCTGGAATGAAAATGC-ACCCTCCTGAGATAACTGGGAAGTCTCCA----------AGCTAGTCACTCAAGCATGAA-G----TAGTCTTTCGG---------GAAGAAAGAGGATCAAATATGTTAAAAC-TAATGTGTGCACCCATCCT-AGATCATAGCATTT-TTAGTTTCAAAGATTCTCATTGC--CTTTCTC-------------------------------------------ACACTAG------------------CAATGCTCATAA---ATCGGGC----------------CTTTAACTAAAAATCCACAACTGCCCTAATTCTAAGTGGTAAGAGAGAATTCAAATGCAAA-ATCAGACTCATGTCCATGCTTATAATGTTTCCATTTCCCCTTTTAAG----------------A-AAAACCTCCCTC----------AGTAAAACCAAAAGTGAATTGGGGTGCATAAAACATCATCTT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20237114 477 - 85365473 AAACAAAGACATTTCCAACACAAATCCATGAATCCAACTTACAAATACACTATGAACACTGGAAACAATGCATGCAAACAGGACATCTGGAATGAAAATGC-ACTCTCCTGAGATAACTGGGAGGTCTCCATTTTACATTTAGCTAGTCAATCAAGCATGAA-G----TAGTCTTTTGGGAAGAATGAGAAGAAAGAGGATCAAATATGTTAAAAC-TAATGTGTGCACCCATCCT-AGATCATAGCATTT-TTAGTTTCAAAGATTCTCATTGC--CTTTCTC-------------------------------------------ACACTAG------------------CAATGCTCATAA---ATCAGGC----------------CTTTAACTAAAAATCCACAACTTCCCTAATTCTAAGTGGTAAGAGAGAACTCAGATGCAAA-ATCAGACTCATGTCCATGCTTATAATGTTTCCATTTCCCCTTTGAAGATATTCTCCTTTGAAGA-AAAATTGCCTTC----------AGTAAAACCAAAAGTGAATTTTAATGCAT-ATCCATCATCTT i nomLeu3.chr20 C 0 I 1 s rheMac3.chr5 16703948 477 + 184069350 AAATAAAGACATTTCCAACACAAATCCATACATCCAACTTATAAATA-ACTATGAACACTGGATACAATGCATGCAAACAGGACATCTGGGATGAAAATGCAACCCTCCTGAGATAATTGGGAAGTCTCCATTTTACATTTAGCTAGTCATTCAAGCATGAA-G----TAGTCTTTTGGGAAGAATGAGAAAAAAGAGGATTAAATATGTTAAAAC-TAATGTGTGCACCCATCAT-AGATCATAGCATTT-TTAGTTTCAAAGATTCTCATTGT--CTTTCTC-------------------------------------------ACACTAG------------------CAAGGCTCATAA---ATCGGGC----------------CTTTAACTAAAAATCCGCAACTGCCCTAATTCTAAGTGGTAAGAGAGCACCCAAATGCAAA-ATCAGACTCATGTCCATGCTTATAATGTTTCTGTTTCCCCTTTGAAGATATTCTCCTTTGAAGA-AAAACTGCCCTC----------AGTAAAACCAAAAGTGAATTTTAATGCAT-ATCCATCATCTT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20745462 477 + 189454096 AAATAAAGACATTTCCAACACAAATCCATACATCCAACTTATAAATA-ACTATGAACACTGGATACAATGCATGCAAACAGGACATCTGGGATGAAAATGCAACCCTCCTGAGATAATTGGGAAGTCTCCATTTTACATTTAGCTAGTCATTCAAGCATGAA-G----TAGTCTTTTGGGAAGAATGAGAAAAAAGAGGATTAAATATGTTAAAAC-TAATGTGTGCACCCATCAT-AGATCATAGCATTT-TTAGTTTCAAAGATTCTCATTGT--CTTTCTC-------------------------------------------ACACTAG------------------CAAGGCTCATAA---ATCGGGC----------------CTTTAACTAAAAATCCGCAACTGCCCTAATTCTAAGTGGTAACAGAGCACCCAAATGCAAA-ATCAGACTCATGTCCATGCTTATAATGTTTCTGTTTCCCCTTTGAAGATATTCTCCTTTGAAGA-AAAACTGCCCTC----------AGTAAAACCAAAACTGAATTTTAATGCAT-ATCCATCATCTT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16341432 477 + 178775436 aaataaagacatttccaaCACAAATCCATACATCCAACTTATAAATA-ACTATGAACACTGGATACAATGCATGCAAACAGGACATCTGGGATGAAAATGCAACCCTCCTGAGATAATTGGGAAGTCTCCATTTTACATTTAGCTAGTCACTCAAGCATGAA-G----TAGTCTTTtgggaagaatgagaaaaaagaggattaaatatgttaaaac-taATGTGTGCACCCATCAT-AGATCATAGCATTT-TTAGTTTCAAAGATTCTCATTGT--CTTTCTC-------------------------------------------ACACTAG------------------CAAGGCTCATAA---ATCGGGC----------------CTTTAACTAAAAATCCGCAACTGCCCTAATTCTAAGTGGTAAGAGAGCACCCAAATGCAAA-ATCAGACTCATGTCCACGCTTATAATGTTTCTGTTTCCCCTTTGAAGATATTCTCCTTTGAAGA-AAAACTGCCCTC----------AGTAAAACCAAAAGTGAATTTTAATgcat-atccatcatctt i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19827668 477 - 48547382 AAATAAAGACATTTCCAACACAAATCCATACATCCAACTTATAAATA-ACTATGAACACTGGATACAATGCATGCAAACAGGACATCTGGGATGAAAATGCAACCCTCCTGAGATAATTGGGAAGTCTCCATTTTACATTTAGCTAGTCACTCAAGCATGAA-G----TAGTCTTTTGGGAAGAATGATAAAAAAGAGGATTAAATATGTTAAAAC-TAATGTGTGCACCCATCAT-AGATCATAGCATTT-TTAGTTTCAAAGATTCTCATTGT--CTTTCTC-------------------------------------------ACACTAG------------------CAATGCTCATAA---ATGGGGC----------------CTTTAACTAAAAATCCGCAACTGCCCTAATTCTAAGTGGTAAGAGAGCACACAAATGCAAA-ATCAGACTCATGTCCATGCTTATAATGTTTCCGTTTCCCCTTTGAAGATATTCTCCTTTGAAGA-AAAACTGCCCTC----------AGTAAAACCAAAAGTGAATTTTAATGCAT-ATCCATCATCTT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21180436 478 - 190850796 AAACAAAGACATTTCCAACACAAATCCATGCATCCAAGTTACAAATTAAATGTGAACACTGGATACAACCCATGCAAAGAGGACATCTGGAATGAAAATGCAACCCTCTTGAGATAACTTGGAAGTCTCCCTTTTACATTTAGCTAGTCACTCAAGCATGAA-G----TAGTCTTTTGGGAAGCAGGAG-AGAAAGAGGATTGAATATGTTCAAAC-TAATGTGTGCACCCATCCC-AGATCATAGCATTT-TTAGTTTCAAAAATTCTCATTGC--CTTTCTC-------------------------------------------ACACTAG------------------CAATGCTCCTAA---ATTGGGC----------------CTTTAACGAAAAATCTGCAACTGCCCTAATTCTAAGTAGTAAGAGAGAACCCAAATGCAAATTTCAGAGTCACATACATGGTTATGGTGTTTTCGTTTCCCCTTCGAAGATATTCTCCTTTGAAGA-AAAATGGCCTTC----------AGTAAAACCAAAAGTGAGTTTTAATGCAT-ATCCATTGTCTT i calJac3.chr3 C 0 C 0 s mm10.chr5 49163266 507 + 151834684 CAAAGGAAGCACATTGAATACAAATCCATGCATATGCCTTATAAATAAAGCATGAACACT-----CAGTATATATAAACAAAAT-TCTGGTATGAAACTAT-AACTCCCCAAGATACCTAAGAGAT-TCCACTTTACATTTTGGTATTC-TTAAAAAATAAGTG----TATTCTTTGAGGAAGTGTGAGAAAGAAGAGTACCAGATATGCTAAAACTTGACTTTTATTTTCCCCAGAAAAAAAGAACACTT-TT-GTTTTGAAGATTTTTCTGACTTCTTTATA-------------------------------------------ACATCAGAGGAATTATGGTAGCTTTCAGGATTCTTAGTGTACTAGGCACACTATTGAAGTAATTTCTTATTCAAAATCTGTACCTGCCATGAT----AATCACTTGGGAGAAGTCACATACAGA-CTCAGACTCAAGAATACAACTGTGGAATTTTCTATTCTCTTCTGAAGCTACACCCCTTTGAAAAGAAAACTCTCTAT----------AGACAAGACAAAATTGAATTTTAATGCAC-TTTGATCATCCT i mm10.chr5 C 0 C 0 s canFam3.chr3 3766717 526 - 91889043 AAAGGAAAACATTTCCAATACAAATCAATT--TCCACCTTGTAAATAAACCATGAACACATCATACAAAGAATGTAAACAGGGCATCTGGTATAAAAATATAACCCCCCTAAGATAACCAAGAAGTCTCCATTGTACATTTAGATAGTCATTCGAGCATGAG-GAGAATAGTCTTTGGGGAAGGATGAGAAGAAAGAGGATCAAATATATTAAAAT-TAATGTGCATATCCCTCCCCAGACCACAGTATTTCTTAGCTTCAAACATCCTCATTGT--CTGTCTTTATAATTTCAGAGAAATCAGGGTAACGTTGAGGAATATTCATAATACTAG------------------GAATTATCTCAA---ATCGGTA----------------TTTTAACTAAAAATCTGTAACTGCCATAAC------CAGCAAGAGAGACCTCAACTGCAAA-ATGAGGCTCGTGTACATGCTTGAGGTCTTT---TTTCCCCTTTGAAGATATTCCCCTTTGAGGA-CAGCATGCCCTCCGaaaaaaaaaaaaaaaaaaaaaGTGAATTTTAGTGCAT-ATCCATCATCTT i canFam3.chr3 I 230 C 0 a score=238568.000000 s hg38.chr4_KI270790v1_alt 61833 63 + 220246 AAAAAATGGATTTTACAAATTAAGCATTATGAACAATTTGTAA----GTGCATTCTAATACTGTAC-A s panTro4.chr4 21450242 63 + 193495092 AAAAAATGGATTTTACAAATTAAGCATTATGAACAATTTGTAA----GTGCATTCTAATACTGTAC-A i panTro4.chr4 I 264 C 0 s ponAbe2.chr4 21625875 63 + 198332218 AAAAAATGGATTTTACAAATTAAGCATTACGAACAATTTGTAA----GTGCATTCTAATACTGTAC-A i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20237592 63 - 85365473 AAAAAATGGATTTTACAAATTAAGCATTATGAACAATTTGTAA----GTGCATTCTAATACTGTAC-A i nomLeu3.chr20 I 1 C 0 s rheMac3.chr5 16704425 63 + 184069350 AAAAAATGGATTTTACAAATTAAGCATTATGAACAATTTGTAA----GTGCATTTTAATACTGTAT-A i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20745939 63 + 189454096 AAAAAATGGATTTTACAAATTAAGCATTATGAACAATTTGTAA----GTGCATTTTAATACTGTAT-A i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16341909 63 + 178775436 aaaAAATGGATTTTACAAATTAAGCATTATGAACAATTTGTAA----GTGCATTTTAATACTGTAT-A i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19828145 63 - 48547382 AAAAAATGGATTTTACAAATTAAGCATTATGAACAATTTGTAA----GTGCATTTTAATACTGTAT-A i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21180914 63 - 190850796 TAAAAATGGGTTTTATAAATTAAGTTTTGTGAACAATTTGTAA----GTGCATTCTAATACCGTAT-A i calJac3.chr3 C 0 C 0 s mm10.chr5 49163773 64 + 151834684 TGAAATTAGAATTTACAAATCAACCCCTGTGAACAATTCATAA----GGATATTATTAGACTGCACAA i mm10.chr5 C 0 C 0 s canFam3.chr3 3767243 66 - 91889043 TAAAAGCCGAGTTTACAAA-CAGGCACTGTGAACAATTTATGAGCATGTTCATTACAAGACTGTAT-A i canFam3.chr3 C 0 I 247 a score=3413387.000000 s hg38.chr4_KI270790v1_alt 61896 955 + 220246 CAGAGTTGAGAGCCAAGGATTTTAGCATCTGATAAAtctaaagttaa-at-atctgagttcaa-g-gccaactcaactatt-ttctagctttgtggatttgggaagttatttaggcttgctgtgcttcaggatcctcatgggcaaaattaagattaaaatatctacttt----ataaggta--gaag---tgatacttaaataaggcaatatatatatgaaacagttactccaggatctgacatataataagtgctcaataaatggtagctattaAG--GTTGAGAATAGTCATAAAGAAGTCCTAGGAACTAGCTAAATAGTAAAATACCAGGATTATATACTTTGCCTTTCACAAAATAAGTGCTATTAGGGAAAATGTTTTAACATCAGCattt-aaaactataat-----a------ttttaatgcaattccaatataaatttatgtttaaagggtaaatttTCATGGTTGAAATACCGAACAAAGCCCATTAT-AAAAATGTTTTA--TTTCACCCATTTCTTCTGAGTTCCAAGCA-GGGAAGATA-AAGAAAGAAACCAAATGAGTAGATGATTTTACATGATAAACTCGAGAAAAATCAAGATGGTGCTTCAGTGACACACAGAAGTTTCTTACACATAGTGAT-AGTCAAAACTAGTTTACTGAATTAGAACATCATGTAAATATTTCATTATAAGA-TTTTTTGTGTGTGGTAAAATTTCTGTTCTTTTCTTGCATATgttatttatgaacataaaacatgcctcactcatccccat-------gagtctccacaatgcctggcagatagcaggcactca-atgaacttaatttga---ataaTAACATAAGATTTATAT-TACAAGTAAACAAGGATTTACTGCTCAGCAATCTGCATAGCCCATGGTTAGCTACAACCAAACCTTTGAGGTAGCCTGCCTTTACATGAGCAGTTGGAA---AAATCAT-TACCCTCATTT-TAATTTTCCTTCTC- s panTro4.chr4 21450305 955 + 193495092 CAGAGTTGAGAGCCAAGGATTTTAGCATCTGATAAAtctaaagttaa-at-atctgagttcaa-g-gccaactcaactatt-ttctagctttgtggatttgggaagttatttaggcttgctgtgcttcaggatcctcatgggcaaaattaagattaaaatatctacttt----ataaggta--gaag---tgatacttaaataaggcaatatatatatgaaacagttactccaggatctgacatataataagtgctcaataaatggtagctattaAG--GTTGAGAATAGTCATAAAGAAGTCCTAGGAACTAGCTAAATAGTAAAATACCAGGATTATATACTCTGCCCTTCACAAAATAAGTGCTATTAGGGAAAATGTTTTAACATCAGCATTT-AAAACTATAAT-----A------TTTTAATGCAATTCCAATATAAATTTATGTTTAAAGGGTAAATTTTCATGGTTGAAATACTGAACAAAGCCCATTAT-AAAAATGTTTTA--TTTCACCGATTTCTTCTGAGTTCCAAGCA-GGGAAGATA-AAGAAAGAAACCAAATGAGTAGATGATTTTACATGATAAACTCGAGAAAAATCAAGATGGTGCTTCAGTGACACACAGAAGTTTCTTACACATAGTGAT-AGTCAAAACTAGTTTACTGAATTAGAACATCATGTAAATATTTCATTATAAGA-TTTTTTGTGTGTGGTAAAATTTCTGTTCTTTTCTTGCATATgttatttatgaacataaaacatgcctcactcatcctcat-------gagtctccacaatgcctggcagatagcaggcactca-atgaacttaatttga---ataaTAACATAAGATTTATAT-TACAAATAAACAAGGATTTACTGCTCAGCAATCTGCATAGCCCATGGTTAGCTACAACCAAACCTTTGAGGTAGCCTGCCTTTACATGAGCAGTTGGAA---AAACCAT-TACCCTCATTT-TAATTTTCCTTCTC- i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21625938 955 + 198332218 CAGAGTTGAGAGCCAAGGATTTTATCATCTGATAAATCTAAATTTAA-AT-atctgagttcaa-g-gcctactcaactatt-ttctagctttgtgaatttgggaagttatttaggcttgctgtgcttcaggatcctcatgggcaaaattaagattaaaatatctacttt----ataaggta--gaag---tgacacttaaataaggcaatatatatatgaaacagttactccaggatctgacatataataagtgctcaataaatggtagctATTAAG--GTTGAGAATAGTCATAAAGAAGTCCTAGGAACTAGCTAAATAGTAAAATACCGGTATTATATACTCTGCCTTTCATAAAATAAGTGCTATTAGGGAAAATGTTTTAACATCAGCATTT-AAAACTATAAT-----A------TCTTAATGCAATTCCAATATAAATTTATGTTTAAAGGGTAAATTTTCAAGGTTGAAATACTGAACAAAGCCCATTAT-AAAAATGTTTTA--TTTCACCCATTTCTTCTGAGTTCCAAGCA-GGGAAGATA-AAGAAAGAAACCAAATGAATGGATGATTTTACATGATAAACTCGAGAAAAATCAAGATGGTGCTTCAGTGACACACAGAAGTTTCTTACACGTAGTGAT-AGTCAAAACTAGTTTACTGAATTAGAACATCATGTAAATATTTCATTGTAAGA-TTTTTTGTGTGTGGTAAAATTTCTGTTCTTTTCTTGCATATgttatttatgaacataaaacatgcctcactcatcctcat-------gagtctccacaatgcctggcagatagcaggcactca-atgaaCTTAATCTGA---ATAATAACATAAGATTTATAT-TACAAGTAAACAAGGATTTACTGCTCAGCAATCTGCATAGCCCATGGTTAGCTACAACCAAACCTTTGAGGTAGCCTGCCTTTACATGGGCAGTTGGAA---AAATCTT-TATCCTCATTT-TAATTTTCCTTCTC- i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20237655 955 - 85365473 CAGAGTTGAGAGCCAAGGAGTTTAGCATCTGATAAAtctgaagttaa-at-atctgagttcaa-g-gcc-actcaactatt-ttccagctttgtgaatttgggaagttatttaggcttgctgtgcttcaggatcctcatgggcaaaattaagattaaaatatctacttt----ataaggta--gaag---tgatatttaaataaggcaatatatatatgaaacagttactccaggatctgacatataataagtgctcaataaatggtagctattaAG--GTTGAGAATAGTCATAAAGAGGTCCTAGGAACTAGCTAAATAGTAAAATGCCAGGAGTATATACTCTGCCTTTCACAAAATAAGTGCTATTAGGGAAAATATTTTAACATCAGCattt-aaaactataat-----a------ttttaatgcaattccaatataaatttatgtttaaagggtaaatttTCATGGTTGAAATATTGAACAAAGCCCATTAT-AAAAATGTTTTA--TTTCACCCATTTCTTCTGAGTTCCAAGCA-CAGAAGATA-AAGAAAGAAACCAAATGAGTAGATGATTTTACATGATAAATTCGAGAAAAATCAAGATGGTGCTTCAGTGACACACAGAAGTTTCTTACACATAGTGAT-AGTTAAAACTAGTTTACTGAATTAGAACATCATGTAAATATTTCATTATAAGATTTTTTTGTGCATGGTAAAACTTCTGTTCTTTTCTTGCATATgttatttatgaacataaaacatgcctcactcatcctcat-------gagtctccacaatgcctggcagacagcaggcactca-atgaacttaatttga---ataaTAACATAAGATTTATAT-TACAAGTAAATAAGGATTTACTGCTCAGCAATCTGCATAGCCCATGGTTAGCTACAACCAAACCTTTGAGGTAGCCTGCCTTTACATGAGCAGTTGGAA---AAACCAC-TACCCTCATTT-TAATTTTCCTTCTC- i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16704488 959 + 184069350 CAGAGTTGAGAGCCAAGGATTTTAGCATCTGATAAATCTAAAGTTAA-AT-atctgagttcaa-a-gccaactcaactatt-ttctagctttgtgaatttgggaagttatttaggcttgctgtgcttcaggatcctcatgggcaaaattaagattaaaatatctacttt----ataaggta--gaag---tgatgcttaaataaagcaatatatatatgaaacagttactccaggatctgacatacaggaagtgctcaataaatggtagcCATTAAG--GTTGAGAATAGTCATAAAGAAGTCCTAGGAACTAGCTAAATAGTAAAATACCAGGATTATATACTCTGCCTTTCACAAAGTAAGTGCTATTAGGGAAAGTGTTTTAACATCAGCATTT-AAAACTATAAT-----A------TTTTAATGCAATTCCAATATAAATTTATGTTTAAAGGGTAAATTTTCATGGTTGCAATATTGAACAAAACCCATTAT-AAAAATGTTTTA--TTTTACCCATTTCTTCCGAGTTCCAAGCA-GGGAAGATATAAGAAAGAAATCAAATGGGTAGATTATTTTACATGATAAACTCAGGAAAAATCAAGATTATGCTTCAGTGACACACAGAAGTTTCCTACACATAGTGAT-AGCCAAAACTAGTTTACTGAATTAGAACCTCGTGTAAATATTTCATTATAAGA-TTATTTTTGTGTGGTAAAATTTCTGTTCTTTTCTTGCATGTGTTATTTATGAATATAAAAcatgcctcactcattctcat-------gagtctctacaatgcctggcagataacaggcactca-gtgaacttaaattgaatgaTAATAACATAAGATTTATGT-TACAAGTAAACAAGGATTTACTGCTCAGCAATCTGCATAGCCCATGGTTAGCTACAAGCAAACCTTTGAGGTGGCCTGCCTTTATATGAGCAGTTGGAA---AAATCAT-TACCCTCATTT-TAATTTTCCTTCTC- i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20746002 959 + 189454096 CAGAGTTGAGAGCCAAGGATTTTAGCATCTGATAAATCTAAAGTTAA-AT-atctgagttcaa-a-gccaactcaactatt-ttctagctttgtgaatttgggaagttatttaggcttgctgtgcttcaggatcctcatgggcaaaattaagattaaaatatctacttt----ataaggta--gaag---tgatgcttaaataaagcaatatatatatgaaacagttactccaggatctgacatacagtaagtgctcaataaatggtagcCATTAAG--GTTGAGAATAGTCATAAAGAAGTCCTAGGAACTAGCTAAATAGTAAAATACCAGGATTATATACTCTGCCTTTCACAAAGTAAGTGCTATTAGGGAAAGTGTTTTAACATCAGCattt-aaaactataat-----a------ttttaatgcaattccaatataaatttatgtttaaagggtaaatttTCATGGTTGCAATATTGAACAAAACCCATTAT-AAAAATGTTTTA--TTTCACCCATTTCTTCCGAGTTCCAAGCA-GGGAAGATATAAGAAAGAAATCAAATGGGTAGATTATTTTACATGATAAACTCAGGAAAAATCAAGATTATGCTTCAGTGACACACAGAAGTTTCCTACACATAGTGAT-AGTCAAAACTAGTTTACTGAATTAGAACCTCGTGTAAATATTTCATTATAAGA-TTATTTTTGTGTGGTAAAATTTCTGTTCTTTTCTTGCATGTGTTATTTATGAATATAAAAcatgcctcactcattctcat-------gagtctctacaatgcctggcagataacaggcactca-gtgaacttaaattgaatgaTAATAACATAAGATTTATGT-TACAAGTAAACAAGGATTTACTGCTCAGCAATCTGCATAGCCCATGGTTAGCTACAAGCAAACCTTTGAGGTGGCCTGCCTTTATATGAGCAGTTGGAA---AAATCAT-TACCCTCATTT-TAATTTTCCTTCTC- i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16341972 959 + 178775436 CAGAGTTGAGAGCCACGGATTTTAGCATCTGATAAATCTAAAGTTAA-AT-ATCTGAGTTCAA-A-GCCAACTCAACTATT-TTCTAGCTTTGTGAATTTGGGAAGTTATTTAGGCTTGCTGTGCTTCAGGATCCTCATGGGCAAAATTAAGACTAAAATATCTACTTT----ATAAGGTA--GAAG---TGATGCTTAaataaagcaatatatatatgaaacagtTATTCCAGGATCTgacatacagtaagtgctcaataaatggtagccatTAAG--GTTGAGAATAGTCATAAAGAAGTCCTAGGAACTAGCTAAATAGTAAAATACCAGGATTATATACTCTGCCTTTCACAAAGTAAGTGCTATTAGGGAAAGTGTTTTAACATCAgcattt-aaaactataat-----a------ttttaatgcaattccaatataaatttatgtttaaaggGTAAATTTTCATGGTTGCAATATTGAACAAAAcccattat-aaaaatgtttta--tttcacccATTTCTTCCGAGTTCCAAGCA-GGGAAGatataagaaagaaatcaaatgggTAGATTATTTTACATGATAAACTCAGGAAAAATCAAGATTATGCTTCAGTGACACACAGAAGTTTCCTACACATAGTGAT-AGTCAAAACTAGTTTACTGAATTAGAACCTcatgtaaatatttcattataaga-TTATTTTTGTGTggtaaaatttctgttcttttcttgcATGTgttatttatgaatataaaacatGCCTCACTCATTCTCAT-------GAGTCTCTACAATGCCTGGCAGATAACAGGCACTCA-GTGAACTTAAATTGAATGATAATAACATAAGATTTATGT-TACAAGTAAACAAGGATTTACTGCTCAGCAATCTGCATAGCCCATGGTTAGCTACAAGCAAACCTTTGAGGTGGCCTGCCTTTATATGAGCAGTTGGAA---AAATCAT-TACcctcattt-taattttccttctc- i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19828208 959 - 48547382 CAGAGTTGAGAGCCAAGGATTTTAGCATCTGATAAATCTAAAGTTAA-AT-atctgagttcaa-a-gccaactcaactatt-ttctagctttgtgaatttgggaagttatttaggcttgctgtgcttcaggatcctcatgggcaaaattaagattaaaatatctacttt----ataaggta--aaag---tgatgcttaaataaagcaatatatatatgaaacagttactccaggatctgacatacagtaagtgctcaataaatggtagcCATTAAG--GTTGAGAATAGTCATAAAGAAGTCCTAGGAACTAGCTAAATAGTAAAATACCAGGATTATATACTCTGCCTTTCACAAAGTAAGTGCTATTAGGGAAAGTGTTTTAACATCAGCattt-aaaactataat-----a------ttttaatgcaattccaatataaatttatgtttaaagggtaaatttTCATGGTTGCAATATTGAACAAAACCCATTAT-AAAAATGTTTTA--TTTCACCCATTTCTTCTGAGTTCCAAGCA-GGGAAGGTACAAGAAAGAAATCAAATGGGTAGATTATTTTACATGATAAACTCAGGAAAAATCAAGATTATGCTTCAGTGACACACAGAAGTTTCCTACACATAGTGAT-AGTCAAAACTAGTTTACTGAATTAGAACCTCGTGTAAATATTTCATTATAAGA-TTATTTTTGTGTGGTAAAATTTCTGTTCTTTTCTTGCACGTGTTATTTATGAATATAAAAcatgcctcactcattctcat-------gagtctctacaatgcctggcagataacaggcactca-gtgaacttaaattgaatgaTAATAACATAAGATTTATGT-TACAAGTAAACAAGGATTTACTGCTCAGCAATCTGCATAGCCCATGGTTAGCTACAAGCAAACCTTTGAGGTGGCCTGCCTTTATATGAGCAGTTGGAA---AAATCAT-TACCCTTATTT-TAATTTTCTTTCTC- i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21180977 954 - 190850796 CAGCATTaagaggcaaggattttagcatctgacaaatctaaagttaa-at-atctgagttcaa-a-tgccaacaaactatt-ttctagctttgtgaatttggaaagttatttagacttgctgtgcttcaggatcctcatgggaaaaattcaggttaaaatatcttcttt----ataaggtg--aaag---tgatgcttaaataaggcaatatatatagaaaacagttactccaagatctgacatataataagtgctcaataaatggtagctattaAG--GTTGAGAATAGTCATAAACAAGTCCTGGGAACTAGCTAAATAATAAAATACCAGGATTATATACTCTGCCTTTCTCAAAAGAAGTGCTGCTAGGGAAAACATTTTAACATCAGCATTT-AAAACTACAATA----A------TTATAAAGCAATTCCAATATATATTTGTGTTTAAAGGGTAAATTTTCATGGTTGAAATACTGAACAAAACCCATTAT-AAAATTGTTTTA--TTTCATCCCTTTCTTCTGAGTTCCAAGCA-GGGAAAACACAAGGAAAA----AAATGAGTAGATGATTTTACACAATAAACTCAAGAAAAATCAAGATTGTGCTTCAGTGAGACGCAGAAGTTGCTTACTCGTAATGAT-AGTCACAACTAGTTTACTGAATAAGAACTTCGTGTAAATATTTCCTCATAAGA-TTGCTTTTGTGTGGTAAAATTGCTGTTCTTTTCTTTTATA---TATTTATAATCATAAAACATGCCTCACTCATACTCAT-------GAGTCTCTacaatgcctggcagatagtgagcactca-atgaaCTCAAATGGAATGATAATAATGTAAGGTTTATACATACACGTAAACAAGGATTTACTGCTCAGCAATCTGCATAGCCCATAGTTAGCTATAAGCAGACCTTTGAGGTAGACTGCCTTTACATGAGCAGTTGGAA---AAGTCAT-TACTCTCATTT-TTATTTTCCTTCTC- i calJac3.chr3 C 0 C 0 s mm10.chr5 49163837 816 + 151834684 TGGAGTTAAGAGCCAAGAACTTTAGTATCTGGCAactctggagttga-ataatctgtgttcagtc-atcatctcaaatattacttgagctttgtggcttttaaatttttcttaggctttctgtgtctccccattttcacaggacattttaggataacattatcta-ttc----atagggtA--GAAATGTTGATGCTTACAAAAGGCAGTATGTA----AGAAACCTATCCAAAAATCTGA-ATGTAGTTGGTTCTCAAAGAATAATAGCCATTAAGGAGACGACACCTGTCATATATAAACCCTAGGAAGTAGCTACCTAGTTTAATGCCACAATGATACACCTTTCCATGCCCAAATTAGATGATA--AGTAAAA---TTTTCACACCAACACTTAAAAACTATGGT-----GTAGGATTTATAATGTAATTCCAGGATGCATTTATGTTTCAAGGGCAAATCAT---------------GAACTAAGTCCACTAT-AAAAACATTTCA--TTTCATA---TGATTTTGAGTTCCAAGCA-GAGAAGAATTAAGAAGGAAG--AAATAAGTAAAAAGT--------ATGAGTTCCAAAGAGAAGGGAAT---------GTGACA----------------ACATGTTGTTCAGATAAGACTCTCTCAGTACACAG-----TGATGTAAGTAT---GATATCAGA-CTTATTTTTT----CActctctcttttcctaccttccacctcttttttct----------------------atcctc---------tggtcaccactatattttcatgttgtcatcaacttgtacgtgctcaatttg-------------taagattcctct-cccatgtgaa-----attgtctgct--------------------------------------------gattgtctttctgcatctgtgttatttaag---aattcacatacccttatgtatcatttttgttgtc- i mm10.chr5 C 0 I 229 s canFam3.chr3 3767556 946 - 91889043 CGGATTTAAGGGCCAAGGATTTGAGAATTTGGTAAATCTAACATTAGTAA-GActgagttcaa-atagcaactcaattagt-tttcagctttgtgactttgggaaattacttaggctttctgtgcctcggtgtcctcacatgtcaaattaggatgacagtatttactttatagataaagtaaggaag---tggtgcttaaataagactaaatgtatat--aagggttgtgtcaggacctgacgtataataagtgctcaataaccggtagctattaAG--TGTGAGAATAGTCATAAATGAATCCTAGGAAATAGCTCCTAGGTACAATGCCAGGATTATATACTTGGCCTTTCACAGAATAACTTATATTTGGGAAAACATTTTAACATTAGCATTG-AAAATTATGATGCATTA------TTTTAATGCAATTGTAATATAGATTTATGTTGGAAGGCTAAATGTTCATGATTGAAACACTGAACAAAGCCCATTACAAAAAATGCTTTCATTTTTACCCATTCCTTCTGAGTTCTGGGCAGGGGGAGAAATGAAGAAGAACCAGAATGAATAGATGAATTGACTTCATGGACTTGAGAGAAACTGAGATGATGCTCTCAAAGCACAGAGGAGTCCTCTACATGGAG-----AATCAACATTAGTTCACTGAATGAAGACTCCATATAAATATTTCATTGTAAGA-TTATTTTTGTGGCGTTAAATTTCTATTCCTTTCTTGCATTAATTCATTTCAAAC-CAAAATATGTCTCACTCATCCTCATATCACCAGGGTCCCAACAATGCCTGGCAGGTAACTGGCACTCA-TTGGACTTATAAGGAATGATATTGATATACGATATATACAAACACGTAAACAAGGGTTTGCTGCTCAGCAATCTGCCTCGCCCTTGGTGAG-----------------------------------TGGGCAGCTGGAGGGTAAATCAC-TGCTCTCGTTT-CTATTTTCTTTTCCC i canFam3.chr3 I 247 C 0 a score=902648.000000 s hg38.chr4_KI270790v1_alt 62851 282 + 220246 CCATTAACGCTTATACTTCAGTGAGAATAAAGTTAAATGAGTGTCTTTTTCTTCCTAGGTTGCTTACATTTTTAAACATAAATCTCAGACCTAAAAGTTTTGTTTCCCTTTTGAAA-ACAAAATTAATTTAGAAAAATG--TAATCAGGTTTTAATTT---TTT-AATTCATAAAGGGCAACTAATTTCTCAACCTAAATTATAGTACAAATTTA-CCAAAATTATTTTAGTCATAAAGAATCTGCATACCATAACAG-AATCATTCTTCAA-AAACTTAAAGCCAAATCTA s panTro4.chr4 21451260 283 + 193495092 CCATTAACGCTTATACTTCAGTGAGAATAAAGTTAAATGAGTGTCTTTTTCTTCCTAGGTTGCTTACATTTTTAAGCATAAATCTCAGACCTAAAAGTTTTGTTTCCCTTTTGAAA-ACAAAATTAATTTGGAAAAATG--TAATCAGGTTTTAATTT---TTTTAATTCATAAAGGGCAACTAATTTCTCAACCTAAATTATAGCACAAATTTA-CCAAAATTATTTCAGCCATAAAGAATTTGCATACCATAACAG-AATCATTCTTCGA-AAACTTAAAGCCAAATCTA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21626893 282 + 198332218 CCATTAACGCTTATACTTCAGTGAGAATAAAGTTAAATGAGTGTCTTTTTCTTCCTAGGTTGCTTACATTTTTAAGCATAAATCTCAGACCTAAAAGTTTTGCTTCCCTTTTGAAA-ACAAAATTAATTTAGAAAAACG--TAATCAGGTTTTAATTT---TTT-AATTCATAAAGGGCAACTAATTTCTCAACCTAAATTATAGCACAAATTTA-CCAAAATTATTTTAGTCACAAAGAATTTGCATACCATAACAG-AGTCATTCTTCAA-AAACTTAAAGCCAAATCTA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20238610 282 - 85365473 CCATTAACGATTATACCTCAGTGAGAATAAAGTTAAATGAGTGTGTTTTTCTTCCTAGGTTGCTTACATTTTTAAGCATAAATCTCAGACCTAAAAGTTTTGTTTCCCTTTTGAAA-ATAAAATTAATTTTGAAAGATG--TAATGAGGTTTTAATTT---TGT-AATGCATAAAGGGCAACTAATTTCTCAACCTAAATTATAGTACAAATTTA-CCAAAATTATTTTAGTCATAAAGAATTTGCATACCATAACAG-AATCATTCTTCAA-AAACTTAAAGCCAAATCTA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16705447 281 + 184069350 CCATTATCACTTATACTTCAGTGAGAATAAAGTTAAATAAA-GTCTTTTTCTTCCTAGGTTGCACACATTTTTAAGCATAAATCTCAGACCTAAAAGTTTTGTTTCCCCTTTGAAA-ACAAAATTAATTTTGAAAGATGTATAATCAGGTTTTAATTT---TTT-AATTCATAAAGGGCAACTCATTTCTCAACCTAAATTATAGCACAAATTTA-CCAAAATTATTT--GTCATAAAGAATTTGCATACCATAACAG-AATCATTCTTTAA-AAACTTAAAGCCAAATCTA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20746961 281 + 189454096 CCATTATCACTTATACTTCAGTGAGAATAAAGTTAAATAAA-GTCTTTTTCTTCCTAGGTTGCACACATTTTTAAGCATAAATCTCAGACCTAAAAGTTTTGTTTCCCCTTTGAAA-ACAAAATTAATTTTGAAAGATGTATAATCAGGTTTTAATTT---TTT-AATTCATAAAGGGCAACTCATTTCTCAACCTAAATTATAGCACAAATTTA-CCAAAATTATTT--GTCATAAAGAATTTGAATACCATAACAG-AATCATTCTTTAA-AAACTTAAAGCCAAATCTA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16342931 281 + 178775436 cCATTATCACTTATACTTCAGTGAGAATAAAGTTAAATAAA-GTCTTTTTCTTCCTAGGTTGCACACATTTTTAAGCATACATCTCAGACCTAAAAGTTTTGTTTCccctttgaaa-acaaaattaattttgaaagatgTATAATCaggttttaatct---ttt-aattcaTAAAGGGCAACTCATTTCTCAACCTAAATTATAGCACAAATTTA-CCAAAATTATTT--GTCATAAAGAATTTGCATACCATAACAG-AATCattctttaa-aaacttaaagccaaatcta i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19829167 281 - 48547382 CCATTATCACTTATACTTCAGTGAGAATAAAGTTAAATAAA-GTCTTTTTCTTCCTAGGTTGGACACATTTTTAAGCATAAATCTCAGACCTAAAAGTTTTGTTTCCCCTTTGAAA-ACAAAATTAATTTTGAAAGATGTATAATCAGGTTTTAATTT---TTT-AATTCATAAAGGGCAACTCACTTCTCAACCTAAATTATAGCACAAATTTA-CCAAAATTATTT--GTCATAAAGAATTTGCATACCATAACAG-AATCATTCTTCAA-AAACTTAAAGCCAAATCTA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21181931 281 - 190850796 CCATTAACACTTATATGTCAGTGAGAATAAAGTTAAATGAGTGCTTTTTTCTTCCTAGGTTGCTTACATTTTTAAGCATAAATCTTAGACCTAAGAATTTTGTTTCCCttttaaaa-ataaaattaattttGAAAGATG--TGATAAGGTTTTAACTT---TTT-AATTCATAAGGGGCCACTTA--TGTCAACCTAAATTATAGCACAAATTTA-CCCAAATTATTCTAGTCATAAAGAATGTACATATCATAACAG-AATTGCTCTTCAAGAAACGTAAAGCCAAATCTA i calJac3.chr3 C 0 C 0 s canFam3.chr3 3768502 273 - 91889043 TCATTATCAGTTATATGTTAGTGAAAATAAAGTTAAATGAGTGTCTTTTTCCTCCTAAGGTGTT--------------TAGATCTTGGGCAAAAAATGTCTGTTTCTCTTTTAAAACACAAAACCAACTTTGAAAGATG--TGATCAAGCATGAAATTCTGTTT-AATTCATAGAGGGCTGCT--TCTGGCCACCTGAATTATACTATGTATTTACCCCAAATCATTTTAGTCATCAACAATTTACCTCCCATGACAGAAATCTGCCTTCAAGAAGCTTAAAACCCAAATCA i canFam3.chr3 C 0 C 0 e mm10.chr5 49164653 229 + 151834684 I a score=1740961.000000 s hg38.chr4_KI270790v1_alt 63133 546 + 220246 AT--ACACACACATTAAGATTTTAGGAAACTGACAAGCCAGAATATAATTAAGTGAAAATTTAGAGAGTATAGACAGCAAATTGGCCAAATTAATTTAAAAAAGGA-AATTAATTGAGc-----acctacaattattactaatcctc-aaaataaccaatt--agctggcattattccccctttagagagagcaaggctcagactcagaga--catgtggctcaagaccatgcaaccagtgaggga-aaattctaaattcaatcctat------gtctgtcaac--c-ttcaaagcttgatttctttccactacactttagtgcTGGAATAAAAACTTGGAA----GGAACACACT------------------------------------CACACAAAGAAAGATTGATAGTGATGAGAGGGAGAAAAGTGCGAATTTGAAGG--AAGATGAAGTAACTTCTTGAAA--ACGTTTGAGCT--TTGTAGAGGAGCAATATACGTAATCCTCTCCAAGCAAGCGTAAC-CATTTCTTATGAATGGCTGAGTTTTATTTTATTTCATTTTTGTAGG---------------------------------------------------AAAAAAACTGAGGTGGAGAA-AGCAAGTGGCCCAA-GGCAAAA s panTro4.chr4 21451543 546 + 193495092 AT--ACACACACATTAAGATTTTAGGAAACTGACAAGCCAGAATATAATTAAGTGAAAATTTAGATAGTATAGACAGCAAATTGGCCAAATTAATTTAAAATAGGA-AATTAATTGAGc-----acctacaattattactaatcctc-aaaataaccaatt--agctggcattattccccctttagagagagcaagtctcagactcagaga--catgtggctcaagaccatgcaaccagtgaggga-aaattctaaattcaatcctat------gtctgtcagc--c-ttcaaagcttgatttctttccactacactttagtgcTGGAATAAAAACTTGGAA----GGAACACACT------------------------------------CACACAAACAAAGATTGATAGTGATGAGAGGGAGAAAAGTGCGAATTTGAAGG--AAGATGAAGTAACTTCTTGAAA--ACGTTTGAGCT--TTGTAGAGGAGCAATATATGTAATCCTCTCCAAGCAAGCCTAAC-CATTTCTTATGAATGGCTGAGTTTTATTTTATTTCACTTTTGTAGG---------------------------------------------------AAAAAAACTGAGGTGGAGAA-AGCAAGTGGCCCAA-GGCAAAA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21627175 546 + 198332218 AT--ACACACACATTAAGATTTTAGGAAACTGACAAGCCAGAATATAATTAAGTGAAAATTTAGATAGTATAGACAGCAAACTGGCCAAATTAATTTAAAATAGGA-AATTAATTGAGc-----acctacaattattactaatcctc-aaaataaccaatt--agctggcattattccccctttagagagagcaaggctcagactcagaga--catgtggctcaagaccatgcaaccagtgaggga-aaattctaaattcaatcctat------gtcagtaagc--c-ttcaaagcttgatttctttccactacactttagtgcTGGAATAAAAACTTGGAA----GGAACACACT------------------------------------CACACAAAGAAAGACTGATAGTGATGAGAGGGAGAAAAGTGCGAATTTGAAGG--AAGATGAAGTAACTTCTTGAAA--ACGTTTGAGCT--TTGTAGAGAAGCAATATACGTAACCCTCTCCAAGCAAGCCTAAC-CATTTCTTATGAATGACTGAGTTTTATTTTATTTCATTTTTGTAGG---------------------------------------------------AAAAAAACTGAGATGGAGAA-AGCAAGTGGCCCAA-GGCAAAA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20238892 546 - 85365473 AT--ACACACACATTAAGATTTTAGGAAACTGACAAGCCAGAATATAATTAAGTGAAAATTTAGATAGTATAGACAGCAATTTGGCCAAATTAATTTAAAATAGGA-AATTAATTGAGc-----acctacaattattactaatcctc-aaaataaccaatt--agctggcattattccccctttagagagagcaaggctcagactcagaga--catgtggctcaagaccatgcacccagtgaggga-taattctaaattcaatcctat------gtctgccagc--ctttcaaagcttgatttc-ttccactacactttagtgcTGGAATAAAAACTTGGAA----GGAACACACT------------------------------------CACACAAAGAAAGATTGATAGTGATGAGAGGGAGAAAAGTGCGAATTTGAAGG--AAGATGAAGTAACTTCTTGAAA--ATGTTTGAGCT--TTGTAGAGGAGGAATATACGTAACCCTCTCCAAGCAAGCCTAAC-CATTTCTTAGGAATGGCTGAGTTTCATTTTATTTCATTTTTGTAGA---------------------------------------------------AAAAAAACTGAAGTGGAGAA-AGCAAGTGGCCCAA-GGCAAAA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16705728 542 + 184069350 ATACACACACACATTGAGATTTTAGGAAACTGACAAACCAGAATATAATTAGATGACAATTTAGACAGTATAGATAGCAAATTGACCAAGTTAATTTAAA--AATA-CATTtattgagc-----acctacaattattactaatcctc-aaaataacaaatt--agctagcattatttcccctttagagagagcaaggctcagacccagaga--catgtggctcaagaccacacaatcagtgaggga-aaattctaaattcaaccctat------gtctgtcagc--c-ttcaaagcttgatttctttccactacaccTTAGTGCTGGAATAAAAACTTAGAA----GGAATA----------------------------------------CACGCAAAGAAAGAT------TGATGAGAGGGAGACAAATACAAATTTGAAGG--AAGATGAGGTAACTTCTTGAAA--AGGTTTGAGCT--TTGTAGAGGAGCAATATACATAACCCTCTCCAAGCAAGCCTGAC-CATTTCTTATGAATGGCTGAGTTTTATTTTATTTCATTTTTGTAGGGG---------------------------------------------AAAAAAAAAAACTGAAGTGGAGAA-GGCAAGTGGCCCAA-CGCAAAA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20747242 542 + 189454096 ATACACACACACATTGAGATTTTAGGAAACTGACAAACCAGAATATAATTAGGTGACAATTTAGACAGTATAGACAGCAAATTGACCAAGTTAATTTAAA--AATA-CATTTATTGAGc-----acctacaattattactaatcctc-aaaataacaaatt--agctagcattatttcccctttagagagagcaaggctcagacccagaga--catgtggctcaagaccacacaatcagtgaggga-aaattctaaattcaaccctat------gtctgtcagc--c-ttcaaagcttgatttctttccactacaccttagtgcTGGAATAAAAACTTAGAA----GGAATA----------------------------------------CACGCAAAGAAAGAT------TGATGCGAGGGAGACAAGTACAAATTTGAAGG--AAGATGAGGTAACTTCTTGAAA--AGGTTTGAGCT--TTGTAGAGGAGCAATATACATAACCCTCTCCAAGCAAGCCTGAC-CATTTCTTATGAATGGCTGAGTTTTATTTTATTTCATTTTTGTAGGGG---------------------------------------------AAAAAAAAAAACTGAAGTGGAGAA-GGCAAGTGGCCCAA-CGCAAAA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16343212 546 + 178775436 atacacacacacattgagaTTTTAGGAAACTGACAAACCAGAATATAATTAGGTGACAATTTAGACAGTATAGATAGCAAATTGaccaacttaatttaaa--aata-catttattgagc-----acctacaattATTACTAATCCTC-AAAATAACAAATT--AGCTGGCATTATTTCCCCTTTAGAGAGAGCAAGGCTCAGACCCAGAGA--CATGTGGCTCAAGACCACACAAGCAGTGAGGGA-AAATTCTAAATTCAACCCTAT------GTCTGTCAGC--C-TTCAAAGCTTGATTTCTTTCCACTACACCTTAGTGCTGGAATAAAAACTTAGAA----GGAATA----------------------------------------CACACAAAGAAAGAT------TGATGAGAGGGAGACAAGTACAAATTTGAAGG--AAGATGAGGTAACTTCTTGAAA--AGGTTTGAGCT--TTGTAGAGGAGCAATATACGTAACCCTCTCCAAGCAAGCCTGAC-CATTTGTTATGAATagctgagttttattttatttcatttttgtagggg-----------------------------------------aaaaaaaaaaaaaaactgaagtggAGAA-GGCAAGTGGCCCAA-CGCAAAA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19829448 546 - 48547382 ATACACACACACATTAAGATTTTAGGAAACTGACAAACCAGAATATAATTAGGTGACAATTTAGACAGTATAGATAGCAAATTGACCAAGTTAATTTAAA--AATA-CATTTATTGAGC-----ACCGACAATTATTACtaatcctc-aaaataacaaatt--agctggcattatttcccctttagagagagcaaggctcagacccagaga--cacgtggctcaagaccacacaatcagtgaggga-aaattctaaattcaaccctat------gtctgtcagc--c-ttcaaagcttgatttctttccactacaccTTAGTGCTGGAATAAAAACTTAGAA----GGAATA----------------------------------------CACGCAAAGAAAGAT------TGATGAGAGGGAGACAAGTACAAATTTGAAGG--AAGATGAGGTAACTTCTTGAAA--AGGTTTGAGCT--TTGTAGAGGAGCAATATACATAACCCTCTCCAAGCAAGCCTGAC-CATTTCTTATGAATGGCTAAGTTTTATTTTATTTTATTTTTGTAGAGG-----------------------------------------GGAAAAAAAAAAAAACTGAAGTGGAGAA-GGCAAGTGGCCCAA-CGCAAAA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21182212 554 - 190850796 ATACATATACATATTAAGGTTTTTGGACACTGACAAGCCAGAATATAATTAAGTGACAATTTAGATAGTATAGATAGCAAATTGGCCAAATTAATTTAAA--AATACCATTTATTGAGC-----ACCCACAGTTATTACtaatcctc-aaaataaccaagt--agctggcattatcatcgctttagagagaacgagacttagattcagaga-ccatgtgactcaagtccacacaaccagtgaggga-aaattctaaattcaatcctat------gtctgttagc--c-ttcaaagtttgatttctttccaccacacTTTGG-GCTGGAATAAACACTTGGAA----GGAACACACC------------------------------------CACACAAAGAAAGATTGATAGCGATGAGAGGGAGAAAAGTGCAAATTTGAAGT--AAGATGAAATAACTTCTTGAAA--AGGTTTGAGCT--TTATAGAGAAGCAATATAAATAATCCTCTCCAAGCAAGCCTAAC-CATTTCTTATGAATGGCTGAGTTTTATTTTATTTCATTTTTGTAGA--------------------------------------------AAAAAAAAAAAAAACTG-GGTGGAGAA-GGCAAGTGGCCCAAGGGCAAAA i calJac3.chr3 C 0 C 0 s mm10.chr5 49164882 543 + 151834684 --gtatatatatatatatatatatataAATTTAAAAG-TAGAATGTGATTAGG---CACATTAGACTATATAAGTAGGCAACTGGCAAAATTCATAAATG--ATAA-CACTTATTAGAA-----TCCT--TGCCATTAGTCATCCTCAAAAATAATTAATTACAGGTGACTTTACTGAACACAGTTATACATTGAAGCTAAGACTGAGAAATTCACTTGACTTTAGA-------------AATAGA-AACCTTAGATTTAAAACCTAGAAAAAAATTGGTCAGTAGC-TTTGGAAATTGATTCCTTCCCATTACACATTACTGCTGGGAGAAAAACTTGGAAATGTGAAATA-TTT------------------------------------AACAGGAAGAAGGTT-GACACT-----GAGAGAGGTTAGTACAGA-TTGAAGGAAAAAATGGAGAGA-----TGAAATGAGTTTTGAGCTACTCATGGAG-ATCAAGGTAAG--ATCCCTTCCATACATATCTGTCTCATCTCTTTGACTTTATTGAGTTTTATTTTATTGCA-GTTTGGAGGAA-----------------------------------------TCTAGTGAAGACAACCTGAAGAAAAAAGTAGCAGTTGGACAAA-AACAAAA i mm10.chr5 I 229 I 529 s canFam3.chr3 3768775 619 - 91889043 ATATATACACACTATGAGAATTTAGTAAAATGACTAGGCAAAGTATAATTAAGTGA-AATTTGGATAATTTAGGCAGCAAATTCCCTGGATTAATAATAA--ATAC-CATATATTGACCTAAAAACCTACCATTATTATTGATTTTC-AAAACAACCAATT--AGCAGACCTT---CACCCAATAGAGAAA------TTTGGAGTCTgtgc----tctgccccaagg-cacgtaaccagggaggggcaaatgctagattggatcctac------atctgccagc--c-ttcaaagcttgatttctttctactacactttgctTCTGGAATTATGAGTGggaa----gaaacaaactgaagaaggagaaggaaggaagaagaaaaaagaaaagaaagaaaATAAATATTGTTACTGATGAGAGAGAAATAGG----AATTTGA-----AAGATAAAAGAATGAATTGAAG--GGGTGTGAACT--TTGTAGAAGAGCAAGATACATTGCCCTCTCCACACAAGCCTGAC-CATCTCCTATGA-TTACTGAGCttcattttatttcttttttttaattttttaattttttaatttttattttttcattttatttcattttTAAAGAGACAACAAACCAGGCTGGAGAA-GGCAAGTGGCCCAAGGGTAGAA i canFam3.chr3 C 0 C 0 a score=661217.000000 s hg38.chr4_KI270790v1_alt 63679 201 + 220246 ATAGCAGTTGAACAAAAAGCTTAACATAGTGAATACTTACACTTAGCACAGGATTTGCCAAATATAGT------TGTTTCATAAACATTTTTGGAACATATAACagtaatcat-taataagtatagaatgttcagtgaccccagtgctggggtaagcatttggcatg---taactgactt--ttctcatgacagtgctatgaggtgggtgttg s panTro4.chr4 21452089 201 + 193495092 ATAGCAGTTGAACAAAAAGCTTAACATAGTGAATACTTACACTTAGCACAGGATTTGCCAAATATAGT------TGTTTCATCAACATTTTTGGAACATATAACagtaatcat-taataagtattgaatgttcagtgacccgggtgctggggtaagcatttggcatg---taactgacat--ttctcatgacagtgctatgaggtgggtgttg i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21627721 201 + 198332218 ATAGCAGTTGAACAAAAAGCTTAACATAGTGAATACGTAcacttagcacaggatttggcaaatatagt------tgtttcataaacatttttggaatatataaCagtaatcat-taataagtattcaatgttcagtgaccccggtgctggggtaagcattcggcatg---taactgacat--ttctcatgacagtgctatgaggtgggtgttg i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20239438 201 - 85365473 ATAGCAGTTGAACAAAAAGCTTAACATAGTGAATACTTAcacttagcacaggatttggcaaatatagt------tgtttcataaacatttttggaatatataaCagtaatcat-taataagtattgaatgttcagtgaccccggtgctggggtaagcattcggcatg---taactgacat--ttctcattacagtgctacgaggtgggtgttg i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16706270 201 + 184069350 ATAGCAGTTGAACAAAAAGCTTAACATAGTGAATACTTAcacttagcacaggatttggcaaatatagt------tgtttcataaacatttttggaatacataaCagtaatcat-taataagtattgaatgttcagtgaccccggttctggggtaagcattctgcatg---taactgacat--ttctcatgacagtgctatgaggtgggtgttg i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20747784 201 + 189454096 ATAGCAGTTGAACAAAAAGCTTAACATAGTGAATACTTACACTTAGCACAGGATTTGGCAAATATAGT------TGTTTCATAAACATTTTTGGAATACATAACagtaatcat-taataagtattgaatgttcagtgaccccggttctggggtaagcattctgcatg---taactgacat--ttctcatgacagtgctatgaggtgggtgttg i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16343758 201 + 178775436 ATAGCAGTTGAACAAAAAGCTTAACATAGTGAATACTTACACTTAGCACAGGATTTGGCAAATATAGt------tgtttcataaacatttttggaATACATAACAGTAATCAT-TAATAAGTATTGAATGTTCAGTGATCCCGGTTCTGGGGTAAGCATTCTGCATG---TAACTGACAT--TTCTCATGACAGTGCTATGAGGTGGGTGTTG i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19829994 199 - 48547382 ATAGCAGTTGAACAAAAAGCTTAACATAGTGAATACTTACACTTAGCACAGGATTTGGCAAATATAGT------TGTTTCATAAACATTTTTGGA--ACATAACagtaatcat-taataagtattgaatgttcagtgaccccggttctggggtaagcattctgcctg---taactgacat--ttctcatgacagtgctatgaggtgggtgttg i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21182766 210 - 190850796 ATAGCAGCTGAATAAAATGCTTAACATTGTGAATACTTACACTTAGCACAGGATTCGACAAATATAGTTTGGAATACATAACAGTAATTTTTGGCATACAGAACAGCaattgc-taataagtactgaatgttcggtgtccctggtgctgaggcaagcattttgcatgtattaactgactt--ttctcttgacaatgctacaagttgggtgatg i calJac3.chr3 C 0 C 0 s canFam3.chr3 3769394 199 - 91889043 ATAGCCATTGAACAAAA-GCCTAACATAGTAAATCCTTACATTGagcacagaacttggcaaatataaa------tgcttaataaatattcctggaatATacaacagcaagtatgcactgagcccttactatgtaccaccactggc-------taagctttctgccagtattaactgacatgctcctcatgacaatgctgcaaggtgggtgcta i canFam3.chr3 C 0 C 0 e mm10.chr5 49165425 529 + 151834684 I a score=2811929.000000 s hg38.chr4_KI270790v1_alt 63880 814 + 220246 ttctcatctccatcctctgc-----atgaggatactgacattcagagagcttatgctgcatgcccacttcccaagtcg-gtagagacctggcctggtccaggaactct-gcttcagatccccagatcctacttactatgcttcactgAATGAATAGAATAATCAGGACATTCTTATCTCAATCCAATTACTTATAAATCAAATTTTTGCTGC-AAAGTTTATCATCAAGACTTAAATTACTTTTATAAAATAAAATAAATACTACTTACACaactgaaatgaagtgaaaacaaaggaaagaaatTGCCATATATTTCACTGTGTCATGAGAATGAGAGTCATTGATCTTGGCAGATCTGAAGCATCCTCTCTGCTCTTTAAATGCCAAACTGATAGATTGTCAGG--ACAAGTGAAAA--ATATGCCTGAAAACTCATCAATACCCATATATTATAGGAAGCATTGCCCGCAAAAACAATTATGCTTGAATATGTGATAGAA-GTCTTAGTGTATAAAATCCATTATGGCAGAAATTAGAAATGAGAGGAAATTCCAAGAAGCTTAATTTATTGATTATTATTTTCATGAAGTGAGGGTGTTGGAGGG-AAAACAAAACCT-TGAGATAATGGAACAGAGAAGTATAATTAAGAAATATGTATGATGTTTATCAGTTTTAAAGACTACAATGGATCATGATTATAATTAAGTTGAACAACTACCAAAGAATACTCATTGATAAAATTAATACTTGCCTAAAAAGAGAGTCTCTATCC-T-TTGGTGAAGAAGAGAAACTGATTTT-----TATGaacaataatgatactgtttaag s panTro4.chr4 21452290 814 + 193495092 ttctcatctccatcctctgc-----atgaggatactgacattcagagagcttacgctgcatgcccacttcccaagtcg-gtagagacctggcctcgtccaggaactct-gcttcagatccccagaccctagttactatgcttcactgAATGAATAGAATAATCAGGACATTCTTATCTCAATCCAATTACTTATAAATCAAATTTTTGCTGC-AAAGTTTATCATCAAGACttaaattacttttataaaataaaataaataCTACTTACACAACTGAAATGAAGTGAAAACAAAGGAAAGAAATTGCCATATATTTCACTGTGTCATGAGAATGAGAGTCATTGATCTTGGCAGATCTGAAGCATCCTCTCTGCTCTTTAAATGCCAAACTGACAGATTGTCAGA--ACAAGTGAAAA--ATATGCCTGAAAACTCATCAATACCCATATATTACAGGAAACATTGCCCGCAAAAACAATTATGCTTGAATATGTGATAGAA-GTCTTAGTGTATAAAATCCATTATGGCAGAAATTAGAAATGAGAGGAAATTCCAAGAAGCTTAATTTATTGATTATTATTTTCATGAAGTGAGGGTGTTGGAGGG-AAAACAAAACCT-TGAGATAATGGAAAAGAGAAGTATAATTAAGAAATATGTATGATGTTTATCAGTTTTAAAGACTACAATGGATCATGATTATAATTAAGTTGAACAACTACCAAAGAATACTCATTGATAAAATTAATACTTGCCTAAAAAGAGAGTCTCTATCC-T-TTGGTGAAGAAGAGAAACTGATTTT-----TATGaacaataatgatactgtttaag i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21627922 815 + 198332218 ttctcatctccatcctttgc-----gtgaggatactgacattcagagagcttatgctgcatgcccacttcccaagtcg-gtagagacctggcctggtccaggaactct-gcttcagatccccagatcctacttactatgcttcactgAATGAATAGAATAATCAGGACATTCTTAGCTCAATCCAATTACTTATAAATCAAATTTTTGCTGTAAAAGTTTATCATCAAGACTTAAATTGCttttataaaataaaataaataCCACTTACACAACTGAAATGAAGTGAAAACAAAGGAAAGAAATTGCCATATATTTCACTGTGTCATGAGAATAAGAGTCACTGATCTTGGCAGATCTGAAGCATCCTCTCTGCTCTTTAAATGCCAAACTGATAGATTGTCAGG--ACAAGTGAAAA--ATATGCCTGAAAACTCATTAATACCCATATATTACCGGAAGCATTGCCCGCAAAAACAATTATGCTTGAATATGTGATAGAA-GTCTTAGTGTATAAAATCCATTAAGGCAGAAATTAGAAACGAGAGGAACTTCCAAGAAGCTTAATTTATTGATTATTATTTTCATGAAATGAGGGTGCTGGAGGG-AAAACAAAACAT-TGAAATAATGGAACAGAGAAGTATAATTAAGCAATATGTATGATGTTTATCAGTTTGAAAGACTACAATGGATCATGATTATAATTAAGTTGAACAACTACCAAAGAATGCTCATTGATAAAATTAATACTTGCCTAAAAAGAGAGTCTCTATCC-T-TTGGTGAAGAAGAGAAACTGATTTT-----GATGAACAATAATGACACTGTTAAAG i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20239639 815 - 85365473 ttctcatctccatcctctgc-----atgaggatactgacgttcagagagcttatgctgcatgcccacttcccaagtcg-gtagacacctggcctggtccaggaactct-gtttcagatccccagatcctacttactatgcttcactgAATGAATAGAATAATCAGGACATTCTTATCTCAATCCAATTACTTATAAATCAAATTTTTGCTGTAAAAGTTTATCATGAAGACTTAAATTGCTTTTGTAAAATAAAATAAATAGCACTTACACAACTGAAATGAAGTGAAAACAAAGGAAAGAAATTGCCTTATATTTCACCGTGTCATGAGAATGAGAGTCATTGATCTTGGCAGATCCGAAGCATCCTCTCTGCTCTTTAAATGCCAAACTGATAGATTGTCAGG--ACAAGTGAAAA--ATATGCCTGAAAACTCATCAATACCCATATATTACAGGAAGCATTGCCCACAAAAACAATTATGCTTGAATACGTGATAAAA-GTCTTCGTGTATAAAATCCATTATGGCAGAAATTAGAAATGAGAGGAACTTCCAAGAAGCTTAATTTATTGATTATTATTTTCATGAAGTGAGGGTGTTGGAGGG-AAAACAAAACGT-TGAGATAATGGAACAGAGAAGCATAATTAAGAAATATGTATGATGTTTATCAGTTTGAGAGACTACAATCGATCATGATTATAATTAAGTTGAACAACTACCAATGAATACTCATTGATAAAATTAATACTTGCCTAAAAAGAGAGTCTCTATCC-T-TTGGCGAAGAAGGTAAACTGATTTT-----TATGAACAATAATGACATTGTTTAAG i nomLeu3.chr20 C 0 I 306 s rheMac3.chr5 16706471 815 + 184069350 gtctcatctccatcctctgc-----atgaggctactgacattcagacagtttatgcggcatgcccacatcccaagtcg-gtaccga-ctcacctggtccagaaactttggcttcagatccccagatcctacttactatgcttcactTAATGAATAAAATAATCAGGACATTCTTATCTCAATCCAATTACTTATAAATCAAATTTTTGCTGTAAAAGTTTATCATCAAGACTTAAATGGCTTTTATAAAACAAAATAAATACCAGTTACACAACTGAAATGAAGTGAAAACAAAGGAAAGGAATTGCCATATATTTCACTGTGTCATGAGAATGAGAGTCATTGATCTTGGCAGATCTGAAGCATCCTCTCTGCTCTTTAAATGCCAAACTGATAGATTGTCAGG--ACAAGTGAAAAATATATGCCTGACAGCTCATCAATACACATATATTACAGGAAGCATTGCCCGCAAAAACAATTATGCTTGAATATGTGATAAAA-GTCTTAGTGTATAAAATCCATTATGGCAGAAATTAGAGATGAGAGAAACTTCCAAGAAGCTTAATTTATTGATTATTATTTTCATGAAATGAGGGTGTTGGAGGG-AAAAAAAACC---TGAGATAATGGAACAGAGAAGCATAATTAAGGTATGTGTATGATGTTTATCAGTTTGAAAGACTACAATGAATCATGATTATAATTAAGTTGAACAACTACCAATGAACACTCATTGATAAAATTAATACTTGCCTAAAAAGAGAGTCTCTATCC-T-TTGGTGAAGAAGAGAAGCTGATTTT-----TATGAACAATAATGACACTGTTTAAA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20747985 816 + 189454096 gtctcatctccatcctctgc-----atgaggctactgacattcagacagcttatgcggcatgcccacatcccaagtcg-gtaccga-ctcacctggtccagaaactttggcttcagatccccagatcctacttactatgcttcactTAATGAATAAAATAATCAGGACATTCTTATCTCAATCCAATTACTTATAAATCAAATTTTTGCTGTAAAAGTTTATCATCAAGACTTAAATGGCTTTTATAAAACAAAATAAATACCAGTTACACaactgaaatgaagtgaaaacaaaggaaaggaattgCCACATATTTCCCTGTGTCATGAGAATGAGAGTCATTGATCTTGGCAGATCTGAAGCATCCTCTCTGCTCTTTAAATGCCAAACTGATAGATTGTCAGG--ACAAGTGAAAAATATATGCCTGACAGCTCATCAATACACATATATTACAGGAAGCATTGCCCGCAAAAACAATTATGCTTGAATATGTGATAAAG-GTCTTAGTGTATAAAATCCATTATGGCAGAAATTAGAGATGAGAGAAACTTCCAAGAAGCTTAATTTATTGATTATTATTTTCATGAAATGAGGGTGTTGGAGGGAAAAAAAAACC---TGAGATAATGGAACAGAGAAGCATAATTAAGGTATGTGTATGATGTTTATCAGTTTGAAAGACTACAATGAATCATGATTATAATTAAGTTGAACAACTACCAATGAACACTCATTGATAAAATTAATACTTGCCTAAAAAGAGAGTCTCTATCC-T-TTGGTGAAGAAGAGAAGCTGATTTT-----TATGAACAATAATGACACTGTTTAAA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16343959 810 + 178775436 GTCTCATCTCCATCCTCTGC-----ATGAGGATACTGACATTCAGACAGCTTATGCGGCATGCCCACATCCCAAGTCG-GTACCGA-CTCACCTGGTCCAGAAACTTTGGCTTCAGATCCCCAGATCCTACTTACTATGCTTcacttaatgaataaaataatcagGACATTCTTATCTCAATCCAATTACTTATAAATCAAATTTTTGCTCTAAAAGTTTATCATCAAGACTTAAATggcttttataaaacaaaataaataccagTTACACAACTGAAATGAAgtgaaaacaaaggaaaggaattGCCATATATTTCACTGTGTCATGAGAATGAGAGTCATTGATCTTGGCAGATCTGAAGCATCCTCTCTGCTCTTTAAATGCCAAACTGATAGATTGTCAGG--ACAAGTGAAAA--ATATGCCTGACAGCTCAtcaatacacatatattataggAAGCATTG-CCGC-AAAACAA-TATGCTTGAATATGTGATAAAA-GTCTTAGTGTATAAAATCCATTATGGCAGAAATTAGAGATGAGAGAAACTTCCAAGAAGCTtaatttattgattattattttcatgaaatgagggtgttggaggg-aaaaaaaacc---tAAGATAATGGAACAGAGAAGCATAATTAAGGTATGTGTATGATGTTTATCAGTTTGAAAGACTACAATGAATCATGATTATAATTAAGTTGAACAACTACCAATGAACACTCATTGATAAAATTAATACTTGCCTAAAAAGAGAGTCTCTATCC-T-TAGGTGAAGAAGAGAAGCTGATTTT-----TATGAACAATAATGACACTGTTTAAG i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19830193 813 - 48547382 gtctcatctccatcctctgc-----atgaggatactgacattcagacagcttatgcggcatgcccacatcccaagtcg-ataccga-ctcacctggtccagaaactttggcttcagatcccctgatcctacttactatgcttcactTAATGAATAAAATAATCAGGACATTCTTATCTCAATCCAATTACTTATAAATCAAATTTTTGCTGTAAAAGTTTATCATCAAGACTTAAATGGCTTTTATAAAACAAAATAAATACCAGTTACACAACTCAAATGAAGTGAAAACAAAGGAAAGGAATTGCCATATATTTCACTGTGTCATGAGAATGAGAGTCATTGATCTTGGCAGATCTGAAGCATCCTCTCTGCTCTTTAAATGCCAAACTGATAGATTGTCAGG--ACAAGTGAAAA--ATATGCCTGACAGCTCATCAATACACATATATCACAGGAAGCATTGCCCGCAAAAACAATTATGCTTGAATATGTGATAAAA-GTCTTAGTGTATAAAATCCATTATGGCAGAAATTAGAGATGAGAGAAACTTCCAAGAAGCTTAATTTATTGATTATTATTTTCATGAAATGAGGGTGTTGGAGGG-AAAAAAAAAC---TGAGATAATGGAACAGAGAAGCATAATTAAGGTATGTGTATGATGTTTATCAGTTTGAAAGACTACAAAGGATCATGATTATAATTAAGTTGAACAACTACCAATGAACACTCGTTGATAAAATTAATACTTGCCTAAAAAGAGAGTCTCTATCC-T-TTGGTGAAGAAGAGAAGCTGATTTT-----TATGAACAATAATGACACTGTTTAAG i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21182976 811 - 190850796 ttctcatttccatcctctgc-----atgaagatactgacattcagagatcttatgctgcatgcacacgtcccaagtcg-gtacagacatggcctggtccaggaactctgacttcagacccccagatcctacttactatgcttcactgAATGAATAGAATA---AGGACTTTCTTATCTCAATCCAGTTCGTTATAAAACAAATTTTTGCTGTAAAGGTTTATCATCAAGAATAAAATCGCttttataaaataaaataaataCCACTTACACAAATGAAATGGAGTGAAAACAAAGGAAAGAAATTGCAATATACTTCGCTGTGTCATGAGAACAA-AGTCATTGATCCTGGCAGATCTGAAGCATCCTCTGTGCTCTTCAAATGCCAATCTGATAAATTGTCAGG--ACAAGTGAAAT--ATATGCCTGAAAACTCATCAATATACATATATTATAGTAAGCAGCACCTGAAAAAACAATTATGCTTGAGTATGTGATAAAA-GTATTAGTGTATAAAATCCATTACAGCAGAAATTAGAAATGAGAGGAACTTCCAAGAAGGTTAATTTATTGATTATTATTTTCATGAAATGAGGGTGTTGGAGGG-AAAACAAAACTT-TGAGATAACAGAACAGAGAAGCATAATTAAGAAATATGTGTGATGTTTATCAGTTTGAAAGACTACAATGGACCATGATTATAATTAAGTTAAAGAACTACCAGTGAATACTCATTGATAAAATGAATACTTGCCCAAAAAGAGAGTTTCTAGCCTT-TTGGTGAAGAAGAGAAACTGATTTT------ATGAACAATAATGACACTGTTTAA- i calJac3.chr3 C 0 C 0 s mm10.chr5 49165954 686 + 151834684 TTCTTATCTCCGACTTTCAT-----GTAAGGTATCTAGCATTCAG--CATTGCTGTGGCTTCCCCACATCTGAAGATGCAGGGAGA-CTGGTATGAACTATGCCCTCTGTCTTCAGATTCCCAGATCCTATATCATATGCTTCACTGA---AATTGAATCATTAGATGGTTCTCAGATTATTTCAAGTACTTATA----AAAATTTTGCCTTAAATGTTTATTGACAAAACATAAGTTACT------ATGTAAAATTAATACCGTCAACA--------------------------------------------------------------------TTGTTGATCATGGAAGATCTAAAACATGCCCTCAATTTGTTGAATG-CATTCCAACATATTGTCAGA--AAAACTAGGAA--ATAT--------ACTTATTAGAACAC----ATTACAGGAAAAATTA-----AAAAGCAATTTTAATCAAAAATGTAATATGA---------CTATAAAGACCATTTTGCCAAAAAT---------GAGAAAATTTAAAGAAATTTGGTTC----ATTATCATTTTCTTGAAATTGAGTCATTAGGCAT-ACATAACAGCCTCCGAGAAAAGAGAACAGAAATGAGTAGATAATGGA-AAGGGTAACTTCAATTGGCTTCAAAGAGGGTGATGTACTGTGAATACGAGTAAGTGAAATAGTTAT--ATGAAA------TATAAAAATTGGTCTTCACCTAAAAATATAAGCATTAGCC-TATCACTGATAATGAGAAGGTGATTCT-----CATG-ATAATGATGGCATTAAATAAA i mm10.chr5 I 529 C 0 s canFam3.chr3 3769593 772 - 91889043 tacttatctccattttccatgaaaaatgaggaaactgatgttcagaaagcatatgctacattctcatgtcccaaatca-atggaga----acttgacccaggaactcaagcttcacactccCAGTCAGTACCC---------------------------ATCAGAACTTTCTTAGCTTATTCCAATTATTCATAAA--AAAATTGT-CTTTAAAAATGTATTGCTAA-ACATGCATCGCTTT----------------TACCACTTATACAACTGAAAAGAGGTAGAAACAAAGGGAAAGAAATCCAACATATTTCATTGTATCATGAGAGCAATAATCACTGATCCTGGCAGATCTGAAGCTTCCTCTTTGCTCTTTAAAGAGCACGCAGTGGAGATGTCAGGGAAAAAATGGAAA--ATATGCTTGAAAATTCATCAGTTCACATATATTCCAGGAAGCATTTGCCATAAAAACAACTGTGCTTGAATATATAGTAAAAAATATTAGTGTATAAAGTCCATTATTCCAGAAATC----ATAAAAGGAATTTCCAAGAAGCTTAATTTATTGACTGTTATTTTTATGAAATGAGGGTGTTGAAAGG-AAAGCAAACCTT-TGAGATAATGGAATAGAGACATATAAAAAAGAAATACCGGTAATGAATGTCAGTTTGAAACACTGCAATGGACCATGATGATGATTAAAACGAATCATTGCCAATGAATACTCACTGATGGAATGAGCATTTAAGT--TAAGAGGGTCTCCAGCC-T-TTGTTGAAGAAGAAAAACTGCTTTTTAATTTATGAATAATAATATCATTGATTAAA i canFam3.chr3 C 0 C 0 a score=537759.000000 s hg38.chr4_KI270790v1_alt 64694 186 + 220246 gataatgcatatgtgtgacactatactaagcac------tcacccacactgtgtgatttaattttctcagcaaTTAATTAAGAACCAGCAATGAATTAAGAACTCCATTACATAAATGTT---GGGAC-AAAA-AA-GGCAAAA--------TAAAAAACTTGACCtattctagtatcatcctgtagttttcatttatagcacatt s panTro4.chr4 21453104 185 + 193495092 gataatgcatatgtgtgacactatactaagcac------tcactcacactgtgtgatttaattttctcagcaaTTAATTAAGAACCAGCAATGAGTTAAGAACTCCATTACATAAATGTT---GGGAC-AAAA-AA-GGCAAAA--------TAAAAA-CTTGACCtattctagtatcatcctgtagttttcatttatagcacatt i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21628737 186 + 198332218 GATAATGCATATGTGTGACACTATACTAAGCAC------TCACCCACGCTGTGTTATTTAATTTTCTCAGCAATGAGTTAAGAACCAGCAATGAGTTAAGAACTCCATTACATAAATGTT---GGGAC-AAAA-AA-GGCAAAA--------TAAAAAACTTGACCtattccagtaccatcctgtagttttcatttatagcacatt i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20240760 149 - 85365473 GATAATGCATATGTGTGACACTATACTAAGCAC------TCACC--------------------TCT------------------CAGCAATGAGTTAAGAACTCCATTACATACATGTT---GGGACAAAAA-AA-GGCAAAA--------TTAAAAACTTGACCTATTCtagtaccatgctgtagttttcatttatagcatatt i nomLeu3.chr20 I 306 C 0 s rheMac3.chr5 16707286 186 + 184069350 GATAATGCAtatgtgtgacactatgctaagcac------tcacccatgccatgttatttaattttctcagcaatgagttaagaaccagcaatgagttaataactccattacataaatgat---gggac-aaaa-aa-ggcaaaa--------tttaaaacttgaccTATTCTAGtatcatcctgtagttttcatttatagcacatt i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20748801 186 + 189454096 GATAATGCAtatgtgtgacactatgctaagcac------tcacccatgccatgttatttaattttctcagcaaTGAGTTAAGAACCAGCAATGAGTTAATAACTCCATTACATAAATGAT---GGGAC-AAAA-AA-GGCAAAA--------TTTAAAACTTGAcctattccagtatcatcctgtagttttcatttatagcacatt i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16344769 186 + 178775436 GATAATGCATATGTGTGACACTATGCTAAGCAC------TCACCCATgccatgttatttaattttctcagcaatgAGTCAAGAACCAGCAATGAGTTAATAACTCCATTACATAAATGAT---GGgac-aaaa-aa-ggcaaaa--------ttaaaaacttgaccTATTCTAGTATCATCCTGTAGTTTTCATTTATAGCACATT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19831006 186 - 48547382 GATAATGCAtatgtgtgacactatgctaagcac------tcacccatgccatgttatttaattttctcagcaaTGAGTTAAGAACCAGCAATGAGTTAATAACTCCACTACACAAATGAT---GGGAC-AAAA-AA-GGCAAAA--------TTAAAAACTTGACCTATTCTAGtatcatcctgtagttttcatttatagcacatt i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21183787 182 - 190850796 -----TGCATGTGTGTGACACTGTACTAGGCAT------TCACCCACACCGTGTTATCTAATTTTCTCAGCAATGAATTAGGAAGCAGCAATGAGTTAAGAACTGCATTATATAAATGAT---GGGAC-AAAA-AAGGGCATGA--------TTAAAAACTGGATctattctactaccatgctgtagttttcatttatagcacatt i calJac3.chr3 C 0 C 0 s mm10.chr5 49166640 150 + 151834684 GATAATACACACACATGATGGT---CTAAGCATATTCCACCATTCACAAAGTGTACTT---------------------------CAGCATTGAGTT----------TTATACAAGTTCCTTAAGGAC-AAAATGA-TGCAAAACTGAACATTTAAGAACTTGATCTATGCTTTTACA-------AATGCTTATTTGta------- i mm10.chr5 C 0 C 0 s canFam3.chr3 3770365 164 - 91889043 GATAATATACATTTTTGACATGGTATTAAGCAT------TCACCCACATGTTGTCAGTTAATTTTCTTAGCCATGAGGCAAGTAC-----------TAAAGTATCCTGTGTATAAAT--C---AAGAT-GAAG-AA-------A--------CTGAGCACTGGATTTATTCTAGAAAAATCCTGTAGTTTTCA---ATAGTTTATC i canFam3.chr3 C 0 C 0 a score=5386590.000000 s hg38.chr4_KI270790v1_alt 64880 1659 + 220246 tccaattgttaattatacacttaattatatatttatttaagtgtgtattcatttttaaattatatg-ttccataagaagagggatcgtagatttaatttatctctaca------tatcca----------------gagtctggctcattgtaggtgctcagaatatatgtgttgaataaaCTTATGAATAAAAGAGATGATGTCAGAGTTCCAGCATCTAAATGCAAAGACATTCCATACACTTGCCTCCCCCAGTGTCTCCCTTTGGGTGAATGTGGAGGGGATGGGTGTTAGGCGTGTGGGAGCAGCAGTGAGATCCCAGAACAGTTAAGGGGAGA-TTTTTTTAAAAATCAAAGGAAG--GTGTGACAGGAACTGAATTAAAAGATTCCAAAAAGAAAAGCTCCAAGATTTAAGATCTTCCCTTTGATACTAATCAATTTATTGAAGACTCTTGACAAAGAACAAGAG-AAAGAGCAAACAAAACTGATAGGATGGAGCCTGATGCATTAGTCACTTGTCAAAATTTGTTGGTAACTGAAGAGAAAGTATGTTTAGCTTCCAAGTCCATTTATAAAAATATGGTTCTCCTGATACTAAAATAACCCCTGGATTCTTCCATAGTAAGGGAAAGGAAAAAATGTAATCATCACTTATGTGTGTGCTATTCTGAACTCAGGCTATTTTTTAATTGGAATAAGGTATCAAGTCTCAGCCTTATCATTTTAAAGTAGTAGTTCCCACAAGGTATGATTAGGACCATTATTTATAACAAAAAGCAAAAGCTGTAGTCTTATTCTCGCTAGCCAGGAGTGAAATGGTGTTCACTTATCAACAAAACTATCTTTGTTCTCAAGAAGGTTGAAGTTATTACCCACCAAGGACT--GCTTTGCATCTACTTTGAGGAATTAAGACATCAACAC-CAACTAGAGATGGCACACCA----TTGTTGTTTGTGTATATGCTATGTAGATGGTTAGATTTTACATCAAGCCCTGGATTTATTAtctgagggcagatgtgtttaaaatcccgcactattgggtataagtaactttgtggatgccacacagccactctagctatccattttctca-tgtcagagacagaatgataattcctgacctatctcctgaagctactgg-----aaaaatcacaaatgaggtaagggatataaaaacaccacataaaccataaagtgcACTTTTCATTTTAACA-TAACCCATCACTCTTTCTTTACATCACTCCATTTAATTTCTGCATTCAGGTGTCAATTTTCAAAATAGAAAGACAGTCTTATCTT--CAGTTGTGTTGGCAGATCCAGCTGAGTAAATGAAGAGTTAGAGCTTGGGAAATGTGCTCTTCCCTGCA------------aacaaca---------acaacaacaaaaa-ccacaacaGTAATAATGGCTAACATGTATTAAGTGCTTATTCTATCCCAGACGATTTTCTAACTCACTGCAGCTGACCTGCAGTAGGACAACTCCATTCTGATATTGGGTCAGGTCATGGGTGAACTAGCATAGGAATGACCAAGAGAACCATTGTGTTTGCCATGTTCATAGTA-TAAGAAACTGGTTCTTCAGCCTT------CACTAGTTGGAGAAAGGGTacagaaatattgtcagagtgggaggaaatcttagcaaacagttaacacacatcttgcccaaagagatgcatatgaatacata s panTro4.chr4 21453289 1668 + 193495092 tccaattgttaattatacacttaattatatatttatttaagtgtgcattcatttttaaattatatg-ttctataagaagagggatcgtaaatttaatttatctctaca------tatcca----------------gagtctggctcattgtaggtgctcagaatatatgtgttgaataaaCTTATGAATAAAAGAGATGATGTCAGAGTTCCAGCATCTAAATGCAAAGACATTCCATACACTTGCCTCCCCCAGTGTCTCCCTTTGGGTGAATGTGGAGGGGATGGGTGTTAGGCGTGTGGGAGCAGCAGTGAGATCCCAGAACAGTTAAGGGGAGA-TTTTTTAAAAAATCAAAGGAAG--GTGTGACAGGAACTGAATTAACAGATTCCAAAAAGAAAAGTTCTGAGATTTAAGATCTTCCCTTTGATACTAATCAATTTATTGAAGACTCTTGACAAAGAACAAGAG-AAAGAGCAAACAAAACTGATAGGATGGAGCCTGATGCATTAGTCACTTGTCAAAATTTGTTGGTAACTGAAGAGAAAGTATGTTTAGCTTCCAAGTCCATTTATAAAAATATGGTTCTCCTGATACTAAAATAACCCCTGGATTCTTCCATAATAAGGGAAAGGAAAAAATGTAATCATCACTTATGTGTGTGCTATTCTGAACTCAGGCTATTTTTTAATTGGAATAAGGTATCAAGTCTCAGCCTTATTATTTTAAAGTAGTAGTTCCCACAAGGTATGATTAGGACCATTATTTATAACAAAAAGCAAAAGCCGTAGTCTTATTCTCGCTAGCCAGGAGTGAAATGGTGTTCACTTATCAACAAAACTATCTTTGTTCTCAAGAAGGTTGAAGTTATTACCCACCAAGGACT--GCTTTGCATCTACTTTGAGGAATTAAGACATCTACAC-CAACTAGAGATGGCACACCA----TTGTTGTTTGTGTATATGCTATGTAGATGGTTAGATTTTAGATCAAGCCCTGGATTTATTATCTAAGGGCAGATGTGCTTAAAATCCCACACTATTGGGTATAAgtaactttgtggatgccacacagccactctagctatcaattttctca-tgtcagagacagaatgataattcctgacctatctcctgaagctactgg-----aaaaatcacaaatgaggtaagggatataaaaacaccacataaaccataaagtgcACTTTTCATTTTAACA-TAACCCATCACTCTTTCTTCACATCACTCCATTTAATTTCTGCATTCAGGTGTCAATTTTCAGAATAGAAAGACAGTCTTATCCT--CAGTTGTGTTGGCAGATCCAGCTCAGTAAATGAAGAGTTGGAGCTTGGGAAATGTGCTCTTCCCTGCA------------aacaacaacaacaacgacaacaacaaaaa-ccacaacaGTaataatggctaacatgtattaagtgcttattctatgccagacgattttctaaCTCACTGCAGCTGACCTGCAGTAGGACAACTCCATTCTGATATTGGGTCAGGTCATGGGTGAACTAGCATAGGAATGACCAAGAGAACCATTGTGTTTACCATGTTCATAGTA-TAAGAAACTGGTTCTTCAGCCTT------CACTAGTTGGAGAAAGGGTacagaaatattgtcagagtgggaggaaatcttagcaaacagttaacacacatcttgcccaaagagatgcatatgaatacata i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21628923 1648 + 198332218 tccaattgttaattatacacttaattatatatctatttaagtgtgtattcatttttaaattatatg-ttccatgagaagagggatcgtagatttaatttatctctaca------tatcca----------------gagtctggctcattgtaggtgctcaga--atatgtgttgaataaaCTTATGAATAAAAGA---GATGTCGGAGTTCCAGCATCTAAATGCAAAGACATTCCATCCATTTGCCTCCCCCAGTGTCTCCCTTTGGGTGAATGTGGAGGGGATGGGTGTTAGGCATGTGGGAGCAGCAGTGAGATCCCAGAACAGTTAAGGGGAGA-TTTTTTAAAAAATCAAAGGAAG--GTGTGACAGGAACTGAATTAACCGATTCCAAAAAGAAAAGTTCCAAGATTTAAGATCTTCCCTTTGATACTAATCAATTTATTGAAGACTCTTGACAAAGAACAAGAG-AAAGAGCAAACAAAACTGATAGGACAGAGCCTGATGCATTAGTCACTTGTCAAAATTTGTTGGTAAGTGAAGAGAAAGTATGTTTAGCTTCCAAGTCCATTTATAAAAATATGGTTCTCCTGATACTAAAATAATCCCTGGATTCTTCCATAATAAGGGAAAGGAAAAAATGTAATCATCACTTATGTGTGTGCTATTCTGAACTCAGGCTATTTTTTAATTGGAATAAAGTATCAAGTCTCAGCCTCATTATTTTAAAGTAGTAGTTCCCACAAGGTATGATTAGGACCATAATTTATAACAAAAGGCAAAAGCTGTAGTCTTATTCTCGCTAGCCAGGAGTGAAATGGTGTTCACTTATCAACAAAACTATCTTTATTCTCAAGAAGGCTGAAGTTATTATCCACCAAGGACT--GCTTTGCATCTACTTTGAGGAATTAAGACATCTACAC-CAACTAGAGATGGCACACCA----TTGTTGTTTGTGTATATGCTATGTAGATGGTTAGATTTTATATCAAGACCTGGATTTATCATCTAAGggcagatgtgcttaaaatcctgcactattgggtataagtaactttgtggatgccacacagtcactccagctatcagttttctca-tgtcagagacagaatgataattcctgacctatctcctgaagctactgg-----aaaaatcacaaatgaggtaagggatataaaaacaccacataaaccataaagtgcACTTTTCATTTTAACA-TAACCCATCACTCTTTCTTTACATCATTCCATCTAATTTCTGCATTCAGGTGTCAATTTTGAGGATAGAAAGACAGTCTTATCCT--CAGTTGTGCTGGCAGATCCAGCTGAGTAAATGAAGAGTTAGAGCTTGGGAAATGTGCTCTTCCCTGCA------------aacaaca---------acaacaaca-------acaacaGTaataatggctaacatgtattaagtgcttattctatgccagacaattttgtaaCTCACTGCAGCTGACCTGCAGCAGGACAACTCCATTCTGATATTGGGTCAGGTCATGGGTGAACTAGCGTAGGAGTGACCAAGAGAACCATTGTGTTTGCCATGTTCATAGTA-TAAGAAACTGGTTCTTCAGCCTT------CACTAGTTGGAGAAAGGGTATAGAAATATTGtcagagtgggaggaaatcttagcaaacagttaacacacatcttgcccaaagagatgcatatgaatacata i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20240909 1669 - 85365473 tccagttgttaattatacacttaatgatatacttacttaagtgtgcattcatttttaaattatatg-ttccatgagaagagggatcgtagatttaatttatctctaca------tatcta----------------gtgtctgcctcattgtaggtgctcagaatatatgtgttgaataaaCTTATGAATAAAAGAGATGATCTCGGAGTTCCAGCATCTAAATGCAAAGACCTTCCATACACTTGCCTCCCCCAGTGTCTTCCTTTGGGTGAATGTGGAGGGGACGGGTGTTAGGCGTGTGGGAGCAGCAGTGAGATCCCGGAACAGTTAAGGGGAGA-TTTTTTTAAAAATCAAAGGAAG--GTGTGATGGGAACTGAATTAACAGATTCCAAAAAGAAAAGTTCCAAGATTTAAGATCTCCCCTTTGATACTAATCAATGTATTGAAGACTCTTGACAAAGAACAAGAG-AAAGAGCAAAGAAAACTGATAGGATGGAGCCTGATGCATTAGTCACTTGTCAAAATTTGTTGGTAAGTGAAGAGAAAGTATGTTTAGCTTCCAAGTCCACTTATAAAAATATAGTTCTCCTGATACTAAAATAACCCCTGGATTCTTCCATAATAAGGGAAAGGAAAAAATGTAATCATCACTTATGTGTGTGCTATTCTGAACTCAGGCTATTTTTTAATTGGAATAAGATATCAAGTCTCAGCCTCATTATTTTAAAGTAGTAGTTCCCACAAGGTATGATTAGGACCATTATTTATAACAAAAAGCAAAAGCTGTAGTCTTATTCTCGCTAGCCAGGAGTGAAATGGTGTTCACTTATCAACAAAACTATCTTTGTTCTCAAGAAGGTTGAAGTTATTACCCACCAAGGACT--GTTTTACATCTACTTTGAGGAATTAAGACATCTACAC-CAACTAGAGATGGCACACCA----TTGTTGTTTGTGTATATGCTATGTAGATGGTTAGATTTTAGATCAagccctggatttatcatctaagggcagatgtgcttaaaatcctgcactattgggtataagtaactttgtggatgccacacaaccactccagctatcagttttctca-tgtcagagacggaatgataattcctgacctatctcatgaagctactgg-----aaaaatcacaaatgaagtaagggatataaaaacaccacacaaaccataaagggcACTTTTCATTTTAACA-TAACCCATCACTCTTTCTTTACATCATTCCACTTAATTTCTGCATTCAGGTGTCAATTTTGAGGATGGAAAGACAGTCTTATCCT--CAATTGTGTTGGCAGATCCAGCTGAGTAAATGAAGAGTTAGAGCTTGGGAAATGTGCTCTTCCCTGCA------------aacaacaacaacaacaacaacaacaaAAACCCACAACAGTAATAATGGCTaacatgtattaagtgcttattctatgccagacaattttctaACTCACTGCAGCTGACCTGCAGTAGGACAACTCCATTCTGATATTGGATCAGGTCATGGGTGAACTAGCATAGGAATGACCAAGAGAACCATTGTGTTTGCCATGTTCGTAGTA-TAAGAAACTGGTTCTTCAGCCTT------CACTAGTTGGAGAAAGGGTATAGAAATATTGtcagagtgggaggaaatcttagcaaacaattaacacacatcttgcccaaagagatgcatatgaatacata i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16707472 1674 + 184069350 tccaattgttaattatacatttaattatatacttatttaagtgtgtattcatttttaaattatatg-ttccatgagaagagggattgtagatttaatttatctctacg------catcca----------------gtgtctggctcattgtaggtgctcagaatatatgtgttgactaaaCTTATGAATAAAAGAGATGATGTCAGATTTCCAGCATCAAAATGCAAAGACATTCCACACTCTTGCCTCCCCCAGTATCTCCCTTTGGGTGAATGTGGAGGGGATGGGTGTTAGGCATGTGGGAGCAGCAGTGAGATCCCAGAACTGTTAAGGGGAGATTTTTTTTTTAAATCAAAGGAAG--GTGTGACAGGAACTGAATAAACAGATTCCAAAAAGAAAAGTTTTAAGATTTAAGATCTCCTCTTTGATACTAATCAATTTATTGAAGATTCTTGACAAAGAATAAGAGAAAAGAGCAAACAAAACTGATAGGACGGAGCCTGATACATTAGTCACTTGTCAAAATTTGTTGATAACTGAAGAGAGAGTATGTTTAGCTTCCAAGTCCATTTATAAAAATATGGTCCTCCTGATACTAAAATAACCCCTGGATTCTTCCATAATAAGGGAAAGGAAAAAATGTAATCATCACTTATGTGTGTGCTATTCTGAACTCAGGCTATTTTTTAATTGGAATAAGGTATCAAGTCTCAGCCTCATTATTTTAAAGTAGTAGTTCCCACAAGGTATGATTAGGACCATTATTTATAACAAAAAGCAAAAGCTGTAGTCTTATTCTCACTAGCCAGGAGTGAAATGGTGGTCACTTATCAACAAAACTATCTTTGTTCTCAAGAAGGTTGAACTTGTTACCCACGAAGGACTGCGCTTTGTATCGACTTTGAGGAATTAAGACATCTACAC-CAACGAGAGACAACACACCA----CTGTTGCTTGTGTATATGCTATGTAGATGGTTAGATTTTAGATCAagccctggatttatcatctaagggcagatggacttaaaatcctgcactattaggtataagtaacatggtggatgccacacaaccactccagctatcagttttctca-tgtcagagacagaatggtaattcctgacctatctcatgaagctactgg-----aaaaatcacaaatgaggtaagggatataaaaacaccacataaaccacaaagtgcACTTTTCATTTTAATA-TAACCAATCACTCTTTCTTTACATCATTCCATTTAATTTCTGCATTCAGGTGTCAATTTTGAGGATAGAA----AGTCTTATCCT--CAGTCGTGTTGGCAGATCCAGCTAAGTAAATGAAGAGTTAGAACTTGGGAAATGTGCTCTTCCCTGCA---aacaacaacaacaacaacaaca---acaacaacaaaaa-ccacaacaGTaataatggctaacatgtattaagtgtttattctaagccagacaattttctaaCTCACTGCAGCTGACCTGCAGTAGGACAACTCCATTCTGATGTTGGACCAGGTCATGGGTGAACTAGCATAGGAATGACCAAGAGAACCATTGTGTCTGCCATGTTCATAGTA-TGAGAAACTGGTTCTTCAGCCTT------CACTAGTTGGAGAAAGGCTATAGAAATATTGtcagagtgggaggaaatcttagcaaacagttaatacacatcttgcccaaagagatgcatatgaatacata i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20748987 1664 + 189454096 tccaattgttaattatacatttaattatgtacttatttaagtgtgtattcatttttaaattatatg-ttccatgagaagagggattgtagatttaatttatctctacg------catcca----------------gtgtctggctcattgtaggtgctcagaatatatgtgttgactaaaCTTATGAATAAAAGAGATGATGTCAGATTTCCAGCATCAAAATGCAAAGACATTCCACACTCTTGCCTCCCCCAGTATCTCCCTTTGGGTGAATGTGGAGGGGATGGGTGTTAGGCATGTGGGAGCAGCAGTGAGATCCCAGAACTGTTAAGGGGAGA-TTTTTTTTTAAATCAAAGGAAG--GTGTGACAGGAACTGAATAAACAGATTCCAAAAAGAAAAGTTTTAAGATTTAAGATCTCCTCTTTGATACTAATCAATTTATTGAAGATTCTTGACAAAGAATAAGAGAAAAGAGCAAACAAAACTGATAGGATGGAGCCTGATACATTAGTCACTTGTCAAAATTTGTTGATAACTGAAGAGAGAGTATGTTTAGCTTCCAAGTCCATTTATAAAAATATGGTCCTCCTGATACTAAAATAACCCCTGGATTCTTCCATAATAAGGGAAAGGAAAAAATGTAATCATCACTTATGTGTGTGCTATTCTGAACTCAGGCTATTTTTTAATTGGAATAAGGTATCAAGTCTCAGCCTCATTATTTTAAAGTAGTAGTTCCCACAAGGTATGATTAGGACCATTATTTATAACAAAAAGCAAAAGCTGTAGTCTTATTCTCACTAGCCAGGAGTGAAATGGTGGTCACTTATCAACAAAACTATCTTTGTTCTCAAGAAGGTTGAACTTGTTACCCACGAAGGACTGCGCTTTGTATCGACTTTGAGGAATTAAGACATCTACAC-CAACGAGAGACAACACACCA----CTGTTGCTTGTGTATATGCTATGTAGATGGTTAGATTTTAGATCAagccctggatttatcatctaagggcagatggacttaaaatcctgcactattaggtataagtaacatggtggatgccacacaaccactccagctatcagttttctca-tgtcagagacagaatgataattcctgacctatctcatgaagctactgg-----aaaaatcacaaatgaggtaagggatataaaaacaccacataaaccacaaagtgcACTTTTCATTTTAATA-TAACCAATCACTCTTTCTTTACATCATTCCATTTAATTTCTGCATTCAGGTGTCAATTTTGAGGATAGAA----AGTCTTATCCT--CAGTCGTGTTGGCAGATCCAGCTAAGTAAATGAAGAGTTAGAACTTGGGAAATGTGCTCTTCCCTGCA------------aacaacaacaaca---acaacaacaaaaa-ccacaacaGTaataatggctaacatgtattaagtgtttattctaagccagacaattttctaaCTCACTGCAGCTGACCTGCAGTAGGACAACTCCATTCTGATGTTGGACCAGGTCATGGGTGAACTAGCATAGGAATGACCAAGAGAACCATTGTGTCTGCCATGTTCATAGTA-TGAGAAACTGGTTCTTCAGCCTT------CACTAGTTGGAGAAAGGCTATAGAAATATTGtcagagtgggaggaaatcttagcaaacagttaatacacatcttgcccaaagagatgcatatgaatacata i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16344955 1679 + 178775436 TCCAATtgttaattatacatttaattatatacttatttaagtgtgtattcatttttaaattatatg-ttccATGAGAAGAGGGATTGTAGATTTAATTTATCTCTACG------CATCCA----------------GTGTCTGGCTCATTGTAGGTGCTCAGAATATATGTGTTGACTAAACTTATGAATAAAAGAGATGATGTCAGATTTCCAGCATCAAAATGCAAAGACATTCCACACTCTTGCCTCCCCCAGTATCTCCCTTTGGGCGAATGTGGAGGGGATGGGTGTTAGGCATGTGGGAGCAGCAGTGAGATCCCAGAACTGTTAaggggaga--tttttttaaaatcaaaggaaG--GTGTGACAGGAACTGAATAAACAGattccaaaaagaaaagttttaagatTTAAGATCTCCTCTTTGATACTAATCAATTTATTGAAGATTCTTgacaaagaataagagaaaagagcaaacaaaactGATAGGACGGAGCCTGATACATTAGTCACTTGTCAAAATCTGTTGATAACTGAAGAGAGAGTATGTTTAGCTTCCAAgtccatttataaaaatatggttCTCCTGATACTAAAATAACCCCTGGATTCTTCCATagtaagggaaaggaaaaaatgtaatcatCACTTATGTGTGTGCTATTCTGAACTCAggctattttttaattggaataAGGTATCAAGTCTCAGcctcattattttaaagtagtaGTTCCCACAAGGTATGATTAGGACCATTATttataacaaaaagcaaaagctgTAGTCTTATTCTCACTAGCCAGGAGTGAAATGGTGTTCACTTATCAACAAAACTATCTTTGTTCTCAAGAAGGTTGAACTTGTTACCCACCAAGGACTGCGCTTTGTATCGACTTTGAGGAATTAAGACATCTACAC-CAACCAGAGACAACACACCA----CTGTTGCTTGTGTATATGCTATGTAGATGGTTAGATTTTAGATCAAGCCCTGGATTTATCATCTAAGGGCAGATGGACTTAAAATCCTGCACTATTAGGTACAAGTAACATGGTGGATGCCACACAACCACTCCAGCTATCAGTTTTCTCA-TGTCAGAGACAGAATGATAATTCCTGACCTATCTCATGAAGCTACTGG-----AAAAATCACAAATGAGGTAAGGGATATAAAAACACCACATAAACCACAAAGTgcacttttcattttaata-taaccAATCACTCTTTCTTTACATCATTCCATTTAATTTCTGCATTCAGGTGTCAATTTTGAGGATAGAAAGACAGTCTTATCCT--CAGTCGTGTTGGCAGATCCAGCTAAGTAAATGAAGAGTTAGAGCTTGGGAAATATGCTCTTCcctgcaaacaacaacaacaacaacaacaaca---acaacaacaaaaa-ccacaacaGTAATAATGGCTAACATGTATTAAGTGTTTATTCTAAGCCAGACAATTTTCTAACTCACTGCAGCTGACCTGCAGTAGGACAACTCCATTCTGATGTTGGACCAGGTCATGGGTGAACTAGCATAGGAATGACCAAGAGAACCATTGTGTTTGCCGTGTTCATAGTA-TGAGAAACTGGTTCTTCAGCCTT------CACTAGTTCGAGAAAGGCTATAGAAATATTGTCAGAGTGGGAGGAAATGTTAGCAAACAGTTAACACACATCTTGCCCAAAGAGATGCATATGAATACATA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19831192 1668 - 48547382 tccaattgttaattatacatttaattatatacttatttaagtgtgtattcatttttaaattatatg-ttccatgagaagagggattgtagatttaatttatctctacg------catcca----------------gtgtctggctcattgtaggtgctcagaatatatgtgttgactaaaCTTATGAATAAAAGAGATGATGTCGGATTTCCAGCATCAAAATGCAAAGACATTCCACACTCTTGCCTCCCCCAGTATCTCCCTTTGGGTGAACGTGGAGGGGATGGGTATTAGGCGTGTGGGAGCAGCAGTGAGATCCCAGAACTGTTAAGGGGAGA-TTTTTTTAAAAATCAAAGGAAG--GTGTGACAGGAACTGAATAAACAGATTCCAAAAAGAAAAGTTTTAAGATTTAAGATACCCTCTTTGATACTAATCAATTTATTGAAGATTCTTGACAAAGAATAAGAGAAAAGAGCAAACAAAACTGATAGGACGGAGCCTGATGCATTAGTCACTTGTCAAAACTTGTTGATAACTGAAGAGAGAGTATGTTTAGCTTCCAAGTCCATTTATAAAAATATGGTACTCCTGATACTAAAATAACCCCTGGATTCTTCCATAATAAGGGAAAGGAAAAAATGTAATCATCACTTATGTGTGTGCTATTCTGAACTCAGGCTATTTTTTAATTGGAATAAGGTATCAAGTCTCAGCCTCATTATTTTAAAGTAGTAGTTCCCACAAGGTATGATTAGGACCATTATTTATAACAAAAAGCAAAAGCTGTAGTCTTATTCTCACTAGCCAGGAGTGAAATGGTATTCACTTATCAACAAAACTATCTTTGTTCTCAAGACGGTTGAACTTGTTACCCACCAAGGACTGCGCTTTGTATCGACTTTGAGGAATTAAGACATCTACAC-CAACCAGAGACAACACACCA----CTGTTGCTTGTGTATATGCTATGTAGATGGCTAGATTTTAGATCAAGCCCTGGATTTATCATCTAAGggcagatggacttaaaatcctgcattattgggtataagtaacacggtggatgccacacaaccactccagctatcagttttctca-tgtcagagacagaatgataattcctgacctatctcatgaagctactgg-----aaaaatcacaaatgaggtaagggatataaaaacaccacataaaccacaaagtgcACTTTTCATTTTAATA-TAACCAATCACTCTTTCTTTATATCATTCCATTTAATTTCTGCATTCAGGTGTCAATTTTGAGGATAGAAAGACAGTCTTATCCT--CAGTCGTGTTGGCAGATCCAGCTAAGTAAATGAAGAGTTGGAGCTTGGGAAATGTGCTCTTCCCTGCA------------aacaacaacaaca---acaacaacaaaaa-ccacaacaGTAATAAAGGCTACCATGTATTAAGTATTTATTCTAAGCCAGACAATTTTCTAACTCACTGCAGCTGACCTGCAGTAGGACAACTCCATTCTGATGTTGGACCACGTCATGGGTGAACTAGCATAGGAATGACCAAGAGAACCATTGTGTTTGCCATGTTCATAGTA-TGAGAAACTGGTTCTTCAGCCTT------CACGAGTCGGAGAAAGGCTATAGAAATATTGtcagagtgggaggaaatcttagcaaacagttaacacacatcttgcccaaagagatgcatatgaatacatc i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21183969 1640 - 190850796 tccaattgttaattatacacttaattatatatttatttattcgtttattcatttttaaatgatatg-ttccacgagaagagggatcatggattttatttatgtctaca------tatcca----------------ctgtgtgactcattgcaggtgctcagaatatatgtgttggctaaaCTTATGAATAAAAGAGAGGATGTTGGAGTTCCAGAATCTAAACACATAACCATTCCACAATCTTGCCTCCCCCAGTGTCTCCCTCTGGGTGAATGTGGAGGGGATGAGTGTTAGGCATGTAGGAGTAGCAGTGAGATCCTAGAACTTATAAGGGGAGA--TTTTTAAAAAATCAAAGGAAG--GTATGACAGGAACTGAATTAACAGATTCCAAAGAGGAAAGCTTTAAGATTTAAGATCTGCCATTTGATACCAAGCAACTTATTGAAGACCTTGGACAAAGAATAAGAG-AAAGAGCAAACAAAACTAATAGGACAGAGCCTAATGTATTAGTCACTTATCAAAATTTGTTGATAACTGAAGAGAAAGTATATTTAGCTTCCAAGTCCATTTATGAAAATATGGTTCTCCTGATATTAAAATAACCCCTGGATTCTTCTATAATAAGGGAAAGAAAAAAATGTAATCAGCATTTATGTGTGTGCTATTCAGAACTCAGGCTATTTTTTAATTGGAGTAAGATATCAAGTCTCAGCCTCATTATTTTAAAGTAGTAGTTCCCACAAGGTATGATTAGCACCATTATTTATAACAAAAAGCAAAAGCTGTAGACTTATTCTCACTATCCAGGAGTCAAATGGTGTTCACTTATCAACAAAACTATCTTTGTTCTCAAGAAGGTTGAAGTTATTACCCACCAAGGACC--GCTTTGCATCTACTTTGAGGAATTAAGACATCTACAC-CAACTAGAGATGACAC-CAT----TTCTTGCTTATGTATATGCTATGTAGATGGTTAGATTTtagaataagccctgggtttatcatctaagggcagatgagcttaaaatcctgcactgttgggtgtaagtaactttgtggatgccacacaaccattccaactatcagttttct--------gagacagaatgataattcctgacttctctcatgaatctactat-----aaaaataacaaataagataagggata-------actacataaaccataaagtacACTTTTCATTTTAACA-TAACCAGTCACTCTTTCTTTACATTATTCCATTTGGTTTCTGCGTTCAGGTGTCAATTTTGAGGATAGAAAGACAGTTTCATCCT--CAATTGTGTTGGCAGATCCAGCTGAGTAAATGAAGAGGTAGAGCTTGGAAAATGTGCTCTTCCCTGCA------------AATA------------ACAACAACAAAAA-CCACGACAGTaataatggctaacatgtattgagtgcttattctatgccagacaattttctaaCTCACTGCAGCTAACCTGTATCAGGACAACCCCATTCTGATGTTGGGCCAGGCCATGGATGAACTAGCATAGGAATGATCAAGAGCACCATTGTGTTTGCCATGTTTACAGTA-TGAGAAACCGGGTCTTCAGCCTT------CACTAGTTGAAGAAAGGGTATAGAAATATTGtcagagtgggaggaaatcttggaaaacagttaacatacatcttgcccaaagagatgcatatgaatacata i calJac3.chr3 C 0 C 0 s mm10.chr5 49166790 1571 + 151834684 ---------taattattgatttaaataataatttaCTT-------------TGATTATATCACATGCTCCCCCCAAAAGCAAAATCATGCATTTTACTTATCTCAATAAAATGGTATACAATTTTCATTATAAAAGGTATCCATTTCATTGTCAGTGTGAAAA--AAATGTGTTGACTAAACTTTTG-ATAGAAGAGATATAGTCAAACTTTTAGACTGACCATGCCTAGA-ATTCCAAAAGGTTGCTTTACTCAATGCTTCACAGTGAGTGACCATAAAGTATGTGGATATAAGGAGTATAGCCAAGGCATTGGGATGGTAGAACTGGCATGGAGGGA----TAAGATACATCAGAGGGAATTGTGTGACAAGAACTCAATTGAATCACACCAAACAGAAAAGTTCC-------AAAATCATCCTTTGGAAACAAGCCCCTGTA--------CCTTGATGCAAAATTCAAAGACAGAG-AAACCCAGCTGATTAGATAGAGTCTAATGCATT----ACTTAGAAGAATTTGTCAATAATTAATGAGAAAGTATATTTACTTTCTAAGTCCATTTGTAAAACTATGTCTCCCCTGTTACTAAAATAATCCCAGGA-TCTTCCTTAAT-----ACAGACATAATTGCAACTATTATTTATGTGTATGTTATTTAAAATTAAGGCTACTTTTTAATTGGAATAAACCACCAAATCCCTGCATCATTATTTAAGAGAAGTAGTTCCCACAAGATGTGTTGAATATCAT-ATGGTTAACA-----CTACAAATATAGTC---TTCTCACTAGCCAGTAGACAAATGGTTTTCTGTTATCAACAAAACTTTCATTGTTCTCAGGAAGTTTGAAATTATTACCCACCAGGGACC--ACTTTGTATCTGCTTTGAGG-CTGGAGGCAGTGACACTCCACTAAGGTTGATAGATTAGAATTTTTAAATTATTTCTGTATGATGAAGAC--TTAAATTTTAAAT-AAATTGTGGATTTCTGATCTAAGGA-AGGCATGCTTAAGACCTGGCTCTAATGATCATAA-TGGCCTTGTGACTGTC-----------------------TACCTCATTGTC----ACAGACTAACATTCTCTGGCCTGTC--------CTACTGTCCACCAAAGAACACACATGACTCAACATATTTAGAAACACTACATAAACTGTAAACTACACTTCTTATTTTAATACTAATCTATCATTCTCTCTTTTTATCACTCCATCTCACACCTTCATTCCCGTGTCACTTTTAAAGCTAAAACAACATTGGCATTTTTCCAAGGCTGTTCAGTAATCAAACTGAGAAACTGAAAAGTTAAAAGTTGGGAAATG-----------ACA------------AA--------------AGACCAACCA----CCACATCACTGATAATAG-TAATAAGTCCCCAGTGGTAATTGTATAGCAGAT-ATCCTTTAGACCACTGTAAATAATGTCCACTAAAATGATCCCATCCTGATATTGCTCCAGATCTTGTATCAATTAGTTAACAAATGATGGAGACTGCCTTTGTGATTGGAATGCCCATATCAGTGAAAAACTGGATCCTCAGTCCTAACCACCACTACCTGAAGCAAAAATATAGACTAAGTGTGAGGGTAAGAGAGAATCAGGGCAAATAGTTAACAGATATAACAGCTAGAGG---------GAATTCATC i mm10.chr5 C 0 C 0 e canFam3.chr3 3770529 0 - 91889043 C a score=848994.000000 s hg38.chr4_KI270790v1_alt 66539 248 + 220246 tagccctgttaaatgcttacataac---caatgtttatttgagcacctccatgtataaaga--acttaatacttcatgaatcagttgcattccattt---ttgtatgtttaactaataaaatgttccctttctttggtattgtcttaaaat-------------ctagcttcctgttgcttccatctattgattttagttatcccctttgaagtcaaatagtaaaactaaaataattattccatgtgagagcccttaaatatttaaaga s panTro4.chr4 21454957 248 + 193495092 tagccctgttaaatgcttacataac---caatgtttatttgagcacctccatgtataaaga--acttaatacttcatgaatcagttgcattccattt---ttgtatgtttgactaataaaatgttccctttctttggtattgtcttaaaat-------------ctagcttcctgttgcttccatctattgattttagttatcccctttgaagtcaaatagtaaaactcaaataattattccatgtgagagcccttaaatatttaaaga i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21630571 248 + 198332218 tagccctgttaaatgcttacataac---caatgtttatttgagcagctccatgtataaaga--acttaatacttcgtgaatcagttgcattccattt---ttgtatgcttgactaagaaaatgttccctttctttggtattgtcttaaaat-------------ctagcttcctgttgcttccatctattgattttagttatcccctttgaagtcaaattgtaaaattcaaataattattccatgtgacagcccttaaatatttaaaga i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20242578 247 - 85365473 tagctctgtt-aatgcttacataac---caatgtttatgtcagaacctccatgtataaaga--acttaatacttcatgaatcagttgcattccattt---ttgtatgtttgactaataaaatgttctctttctttggtattgtcttaaaac-------------ctagcttgctgttgcttccctctattgattttagttatcctctttgaagtcaaattgtaaaattcaaataactattccatgtgacagcccttaaatatttaaaga i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16709146 248 + 184069350 tagccctgtgaaatgcttacataac---caatgtttatttgagcacctccatgtatgaaga--acttaatactttgtgaatcagtcacattacattt---ttatatgtttgactaataaaatgttttctttctttggtattgtcttaaaat-------------caagcttcgtgttgcttccatctattgattttagttatcccctttgaagttaaattgtaaaattcaaataactattccatgcaacagcccttaaatatttaaaga i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20750651 248 + 189454096 tagccctgtgaaatgcttacataac---caatgtttatttgagcacctccatgtatgaaga--acttaatactttgtgaatcagtcacattacattt---ttatatgtttgactaataaaatgttttctttctttggtattgtcttaaaat-------------caagcttcgtgttgcttccatctattgattttagttatcccctttgaagttaaatagtaaaattcaaataactattccatgcaacagcccttaaatatttaaaga i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16346634 248 + 178775436 TAGCCCTGTGAAATGCTTACATAAC---CAATGTTTATTTGAGCACTTCCATGTATGAAGA--ACTTAATACTTTGTGAATCAGTcacattacattt---ttatatgtttgactaataaaatgttttctttctttggtatTGTCTTAAAAT-------------CAAGCTTCGTGTTGCTTCCATCTATTGATTTTAGTTATCCCCTTTGAAGTTAAATTGTAAAATTCAAATAACTATTCCATGCAACAGcccttaaatatttaaaga i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19832860 248 - 48547382 tagccccgtgaaatgcttacataac---caatgtttatttgagcacctccatgtatgaaga--acttaatactttgtgaatcagtcacattacattt---ttatatgtttgactaataaaatgttttctttctttggtattgtcctaaaat-------------caagcttcatgttgcttccatctattgatttgagttatcccctttgaagttaaattgtaacattcaaataactattccatgcaacagcccttaaatatttaaaga i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21185609 247 - 190850796 tagccctgttagaggtttacataac---gactgtttatttgagcaccttttcttatgaaga--acggaatatttcaggaatcagctgcatccta-tt---ttgtaagtttgactaataaaatgttctctttctttggtgttgtcttaaaat-------------ctagcttcctgctgcttctctctattgattttaattatcccatttgaagtcaaattgtaaaattcaaataactatttcatgtgacagttcttaaatatttaaaaa i calJac3.chr3 C 0 C 0 s mm10.chr5 49168361 249 + 151834684 CAACC----TAAGCGTTTATGTAACAAGCAACAT-------AACACAGCAATGTATGACAA--AATTATTAATTTGTCAATATGTTACATTGAA-TC---TTGTCCTTGGGATGAACAAAATGTT--CTTTCTCCAGCAGT-CATTAAAGTTGGTGAAGATTGACTAGCTTGCTACTGCTTTTATTTGTAGATTTTAGCTTTTCTTTTGTAAGATAAACTGCAAAAGTCTAAGAACTATTTCCTGCCATACTATTTAAACATTTaaaga i mm10.chr5 C 0 I 1547 s canFam3.chr3 3770529 241 - 91889043 TAACCCAATTAAATGTTTGCATaac---c----tgtatttgaacacatccacataggggtgttaccacttactttgtggatttggtacatctcattttccttctgtgtttgactaccaagataccatattt-----gtattctcttgaaat-------------ctagcttcctgttgcttctatccattgatcttagttgtaccttttgaggtctaattgtagaagtca---gactattccttgtgacagcccttaaatatttaaaaa i canFam3.chr3 C 0 C 0 a score=3264365.000000 s hg38.chr4_KI270790v1_alt 66787 1033 + 220246 catatgtcatatcttggcta-----------------------------------------------------------------------------------agagtta-t----------------------------------------------------------------------------------ttcctcATTAAAACAA---------AAT----------------AACTACCAACATTATTTTTCTTTTAAGATATAAAA---TAAAATAAATC-TATGTAGATAGTGGTCAGATTCTGCCAATGAAATCATAATGATCTACTTTTCATGTATTTAACTTTGAGAAAACCTGG-----------------------------------------------------------CTATGGGTGCTAGGCAATTACCAAATCAAAGGTTGTTATGGTGAG-GAAAGTCTGAATAAATGTTTAAATCCCAATAACTTATCCCTGATCTTCCCTCCTCCCCTCAAGATGGCAA-CCTTAAACCAAAGGAGAAAATGCAAAGATTTTGATGCTAATTAGGTATGTGAGGTT--TACCTCCTC---CTTCTCCGA-----------TGGCTTGTAAGGCCATTCCAGATACATCAGGATTGTAACCCTAAGTGTCCCATGCCCCACATCAGGAAATGAATTACCTATATTTCAGATA-CATATGCAGGATACTT-CTACTTTCTATATCTTTACTTATAGGGAGCTGTGATCCCAAACCCTACTAAAAGCATCCCAGACCACAGCAGAGGTACTCTAAAAAAAATTAGCTGGTAATGGAAGGAACAATAACAATACATTATACCCTAACTGTAATTGAAATCTACTCTGTCTCTAGAGAATACTGTCAGATACCTAGCCAAGAATGGGATTTT-ATTTTCTAATTGTGTAAATGTTCCTATTTT---TTTGTATATCATAGTATTTGTAATTAGTAATAAGTCACTACGACATAAGGATTCTGCAACCATCACTTGGATTATTCCTCAATATTTAAATTCAGAGACACAGCAGGCCTGGTAGAACTAATC--------ATCTTttcatccattcagaagcagatgagtatctcctactctgagcctggtgccatggtgagcactgggaatagagATAAAAGAAAGTCAAATCATATGGAAATGGAA------------------ATAATGCAATAGTGAGAGACGAAAAGAAGAAACCAGATTACTATAAAATAGTCTAAGTAATCAGTTAGGATATCCTGGACTCAGTGCTGTAGGGGCACAAAAATGGA s panTro4.chr4 21455205 1033 + 193495092 catatatcatatcttggcta-----------------------------------------------------------------------------------agagtta-t----------------------------------------------------------------------------------ttcctcATTAAAACAA---------AAT----------------AACTACCAACattatttttcttttaagatataaaa---taaaataaatC-TATGTAGATAGTGGTCAGATTCTGCCAATGAAATCATAATGATCTACTTTTCATGTATTTAACTTTGAGAAAACCTGG-----------------------------------------------------------CTATGGGTGCTAGGCAATTACCAAATCAAAGGTTGTTATGGTGAG-GAAAGTCTGAATAAATGTTTAAATCCCAATAACTTATCCCTGATCTTCCCTCCTCCCCTCAAGATGGCAA-CCTTAAACCAAAGGAGAAAATGGAAAGATTTTGATGCTAATTAGGTATGTGAGGTT--TGCCTCCTC---CTTCTCTGA-----------TGGTTTGTAAGGCCATTCCAGATACATCAGGATTGTAACCCTAAGTGTCCCACGTCCTACATCAGGAAATGAATTACCTATATTTCAGATA-CATGTGCAGGATACTT-CTACTTTCTATATCTTTACTTATAGGGAGCTGTGATCCCAAACCCTACTAAAGGCATCCCAGACCACAGCAGAGGTACTCTAAAAAAAATTAGCTGGTAATGAAAGGAACAATAACAATACATTACACCCTAACTGTAATTGAAATCTACTCTGTCTCTAGAGAATATTGTCAGATACCTAGCCAAGAATGGGATTTT-ATTTTCTAATTGTGTAAATGTTCCTATTTT---TTTGTATATCATAGTATTTGTAATTAGTAATAAGTCACTACGACATAAGGATTCTGCAACCATCACTTGGATTATTCCTCAATATTTAAATTCAGAGACACAGCAGGCCTGGTAGAACTAATC--------ATCTTTTCATCCATTCAGAAGCAGATGAGTATCTCCTACTCTGAGCCTGGTGCCATGGTGAGCACTGGGAATAGAGATAAAAGAAAGTCAAATCATACGGAAATGGAA------------------ATAATGCAATAGTGAGAGACGAAAAGAAGAAACCAGATTACTATAAAATAGTCTAAGTAATCAGTTAGGATATCCTGGACTCAGTGCTGTAGGGGCACAAAAATGGA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21630819 1028 + 198332218 catatatcatatcttggcta-----------------------------------------------------------------------------------agagtta-t----------------------------------------------------------------------------------ttcctcATTAAAACAA---------AAT----------------AACTACCAACATTATTTTTCTTTTAAGAT-----A---TAAAAGAAATC-TATGTAGATAGTGGTCAGATTCTGCCAATGAAATCATAATGATCTACTGTTCATCTATTTAACTTTGGGAAAACCTGG-----------------------------------------------------------CTATAGGTGCTAGGCAATTACCAAATCAAAGGTTGTTATGGTGAG-GAAAGTCTGAACAAATGTTTAAATCCCAATAACTTATCCCTGATCGTCCCTCCTCCCCTCAAGATGGCAA-CCTTAAACCAAAGGAGAAAATGGAAAGATTTTGATGCTAATTAGGTATGTGAGGTT--TGCCTCCTC---CTTCTCT-A-----------TGGTTTGTAAGGCCATTCCAGATACATCAGGATTGTAATCCTAAGTGTCCTACACCCTACATCAGGAAATGAATTACCTATATTTCAGATATCATATGCAGGATACTT-CTACTTTCTATATCTTTACTTATAGGGAGCTGTGATCCCAAACCCTACTAAAGGCATCCCAGACCATAGCAGAGGTACTCTAAAAGCAATTAGCTGGTAATGAAAGGAACAATAACAATACATTATACACTAATTGTAATTGAAATCTACTCCGTCTCTAGAGAATATTGTCAGATACGTAGCCAAGAATGGGATTTT-ATTTTCTAATTGTGTAAATGTTCATATTTT---TTTGTATATCATAGTATTTGTAATTAGTAATAAGTCACTATGACATAAGGATTCTGCAACCATCACTTGGATTATTCCTCAATATTTAAATTCAGAGACACAGCAGGCCTGGTAGAACTAATC--------ATCTTCTCATCCATTCAGAAGCAGATGAGTATCTCCTACTCTGAGCCTGGTGCCATGGTGAGCACTGGGAATAGAGATAAAAGAAAGTCAAATCATATGGAAATGGAA------------------ATAACGCAATAGTGAGAGATGAAAAGAAGAAACCATATTACTATAAAATAGTCTAAGTAATCAGTTAGAATATCCTGGACTCAGTGCTGTAGGGGCACAAAGATGGA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20242825 1032 - 85365473 catatatcatatcttggcta-----------------------------------------------------------------------------------agagtta-t----------------------------------------------------------------------------------ttcctcATTAAAACAA---------AAT----------------AACTACCAACATTATTTTTCTTTAAAGATATAAAA---TAAAATAAATC-TAGGTAGATAGTGGTCAGATTCTGCCAATGAAATCATAATGATCTACTGTTCATCTATTCAACTTTGAGAAAACCTGG-----------------------------------------------------------CTATGGGTGCTAGGCAATTACCAAATCAAAGGTTGTTATGGTAAG-GAAAGTCTGAACAAATGTTTAAATCCCAATAACTTATCCCTGATCTTCCCTCCTCCCCTCAAGATGGCAA-CCTTAAACCAAAGGAGAAAATTGAAAGATTTTGATGCTAGTTAGGTATGTGAGGTT--TGCCTCCTC---CTTCTCTGA-----------TGGTTTGTAAGGCCATTCCAGATACATCAGGATTGTAACCCTAAGTGCCCCACGCCCTACATCAGGAAATGAATTACCTATATTTCAGATATCATATGCAGGATACTT-CTACTTT-TATATCTTTACTTATAGGGAGCTGTGATCCCAAACCCTACTAAAGGCATCCCAGACCATAGCAGAGGTATTCTAAAAGCAATTAGCTGGTAATGAAAGGAACAATAACAATACATTATACACTAATTGTAATTGAAATCTACTCTGTCTCTAGAGAATATTGTCAGATACCTAGCCAAGAATGGGATTTT-ATTTTCTAATTGTGTAAATGTTCATA-TTT---TTTGTATATCATAGTATTTGTAATTAGTAATAAGTCACTATGACATAAGGATTCTGCAACCATCGCTTGGATTATTCCTCAATATTTAAATTCAGAGACACAGCAGGCCTGGTAGAACTAATC--------ACCTTTTCATCCATTCAGAAGCAGATGAGCATCTCCTACTCTGAGCCTGGTGCCATGGTGAGCACTGGGAATAGAGATAAAAGAAAGTCAAATCATATGGAAACGGAA------------------ATAATGCAAtagtgagagatgaaaagaagaaaccagattactataaaatagtctaagtaatcagttagaatatcctggactcagtgctgtaggggcacaaagacgga i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16709394 1061 + 184069350 catacaccatatcttggata-----------------------------------------------------------------------------------agagtta-t----------------------------------------------------------------------------------ttcctcgttaaaACAA---------AAT----------------AACTACCAACATTATTTTTCTTTTAAGATATAACA---TAAAATAATTC-TTTGTAGATAGTGGTCAGATTCTGCCAATGAAATCATAGTGATCTACTATTCATCTATTTAACTTTGAGAAAACCTGG-----------------------------------------------------------CTATGGGTGCTAGGCAATTACCAAATCAAAGATTGTTATGGTGAG-GAAAGTCTGAACAAATGTTTAAATCCCAATAATATATCCCTGATCTTCCCTGCTCCCCTCAAGATAGCAA-CCTTAAACCAAAGAAGAAAATGGAAAGATTTTGAAGCTAATTAGGTATGTGAGGTT--TGCCTCTTC------CTCTGT-----------TGGTTTGTAAGCCCATTCCAGATACGTCAGGATCGTAATCCTAAGTGTCCCACGCCCTACATCAGGAAATGAATTACCTATATTTCAGATATCATATGCAAGATACTTACTACTGTCTATATCTTTACTTACAGGGAGCTGTGATCCCAAACTCAACTAAAGGCATCCCAGACCATAGTAGAGGTACTCTAAAAGCAATTAGCTGGTAATGAAAGGAACAATAACAATACATTATACACTAATTGCAATTGAAATCTACCCTGTCTCTAGGGAATATTGTCAGATACCTAGCCAAGAATGGGTTTTTCATTTTCTGATTGTGTAAATGTTCCTATTTT-TGTTTCTATATCATAGTATTTGTAATTAGCAATAAATCACTGTGACATAAGAATTCTGTAACCATCACTTGGAATATTCCTCAATATTTAAATTCAGAGACACAGCAGGCCTGGTAGAACTAATCATCTCTGAATCTTttcatccattcagaagcagatgagtatctcctactctgagcctggtgccatggtgagcactgggaatagagATAAAAGAAAGTCCAATCATATGGAAATGGAAATAATGCAATAGCAAGAGATAATGCAAtagtgagagacgaaaagaagaaaccagatgactataaaataggctaagtgatcagttagaatggactggactcagtgctataggggcacaaagatggA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20750899 1061 + 189454096 catacaccatatcttggata-----------------------------------------------------------------------------------agagtta-t----------------------------------------------------------------------------------ttcctcgttaaaACAA---------AAT----------------AACTACCAACATTATTTTTCTTTTAAGATATAACA---TAAAATAATTC-TTTGTAGATAGTGGTCAGATTCTGCCAATGAAATCATAGTGATCTACTATTCATCTATTTAACTTTGAGAAAACCTGG-----------------------------------------------------------CTATGGGTGCTAGGCAATTACCAAATCAAAGATTGTTATGGTGAG-GAAAGTCTGAACAAATGTTTAAATCCCAATAACATATCCCTGATCTTCCCTGCTCCCCTCAAGATAGCAA-CCTTAAACCAAAGAAGAAAATGGAAAGATTTTGAAGCTAATTAGGTATGTGAGGTT--TGCCTCTTC------CTCTGT-----------TGGTTTGTAAGGCCATTCCAGATACGTCAGGATCGTAATCCTAAGTGTCCCACGCCCTACATCAGGAAATGAATTACCTATATTTCAGATATCATATGCAAGATACTTACTACTGTCTATATCTTTACTTACAGGGAGCTGTGATCCCAAACTCAACTAAAGGCATCCCAGACCATAGTAGAGGTACTCTAAAAGCAATTAGCTGGTAATGAAAGGAACAATAACAATACATTATACACTAATTGCAATTGAAATCTACCCTGTCTCTAGGGAATATTGTCAGATACCTAGCCAAGAATGGGTTTTTCATTTTCTGATTGTGTAAATGTTCCTATTTT-TGTTTCTATATCATAGTATTTGTAATTAGCAATAAATCACTGTGACATAAGAATTCTGTAACCATCACTTGGAATATTCCTCAATATTTAAATTCAGAGACACAGCAGGCCTGGTAGAACTAATCATCTCTGAATCTTttcatccattcagaagcagatgagtatctcctactctgagcctggtgccatggtgagcactgggaatagagATAAAAGAAAGTCCAATCATATGGAAATGGAAATAATGCAATAGCAAGAGATAATGCAATAGTGAGAGACGAAAAGAAGAAACCAGATGACTATAAAATAGGCTAAGTGATCAGTTAGAATGGACTGGACTCAGTGCTATAGGGGCACAAAGATGGA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16346882 1034 + 178775436 catacaCCATATCTTGGATA-----------------------------------------------------------------------------------AGAGTTA-T----------------------------------------------------------------------------------TTCCTCgttaaaacaa---------aat----------------aactaccaacattatttttcttttaagatataaca---taaaataattc-tttgtagATAGTGGTCAGATTCTGCCAATGAAATCATAGTGATCCACTATTCATCCATTTAACTTTGAGAAAACCTGG-----------------------------------------------------------CTATGGGTGCTAGGCAATTACCAAATCAAAGATTGTTATGGTGAG-GAAAGTCTGAACAAATGTTTAAATCCCAATAACATATCCCTGATCTTCCCTGCTCCCCTCAAGATAGCAA-CCTTaaaccaaagaagaaaatggaaagattttgAAGCTAATTAGGTATGTGAGGTT--TGCCTCTTC------CTCTGT-----------TGGTTTGTAAGGCA--TTCAGATACGTCAGGATCGTAAT-CTAAGTGT-CCACGCCCTACATCAGG-AATGAATTACCTATATTTCAGATATCATATGCAAAATACTTACTACTGTCTATATCTTTACTTA--------------CCCAAACTCAACTAAAGGCATCCCAGACCATAGTAGAGGTACTCTAAAAGCAATTAGTTGGTAATGAAAGGAACAATAACAATACATTATACACTAATTGCAGTTGAAATCTACCCTGTCTCTAGAGAATATTGTCAGATACCTAGCCAAGAATgggtttttcattttctgattgtGTAAATGttcctatttt-tgtttctatatcaTAGTATTTGTAATTAGCAATAAATCACTGTGACATAATAATTCTGTAACCATCACTTGGAATATTCCTCAATATTTAAATTCAGAGACACAGCAGGCCTGGTAGAACTAATC--------ATCTTTTCATCCATTCAGAAGCAGATGAGTATCTCCTACTCTGAGCCTGGTGCCATGGTGAGCACTGGGAATAGAGATAAAAGAAAGTCCAATCatatagaaatggaaataatgcAATAGCAAGAGATAATGCAATAGTAAGAGACGAAAAGAAGAAACCAGATGACTATAAAATAGGCTAAGTGATCAGTTAGAATATCCTGGACTTAGTGCTATAGGGGCACAAAGATGga i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19833108 1052 - 48547382 catacatcatatcttggata-----------------------------------------------------------------------------------agagtta-t----------------------------------------------------------------------------------ttcctcATTAAAACGA---------AAT----------------AACTACCAACATTATTTTTCTTTTAAGATACAACA---TAAAATAATTC-TTTGTAGATAGTGGTCAGATTCTGCCAATGAAATCATAGTGATCTACTATTCATCTATTTAACTTTGAGAAAACCTGG-----------------------------------------------------------CTATGGGTGCTAGGCGATTACCAAATCAAAGACTGTTATGGTGAG-GAAAGTCTGAACAAACGTTTAAATCCCAATAACATATCCCTGATCTTCCCTGCTCCCCTCAAGATAGCAA-CCTTAAACCAAAGAAGAAAATGGAAAGATTTTGAAGCTAATTAGGTATGTGAGGTT--TGCCTCTTC------CTCTGT-----------TGGTCTGTAAGGCCATTCCAGATACGTCAGAATCGTAATCCTAAGTGTCCCACGCCCTACATCAGGAAATGAATTACCTATATTTCAGATATCATATGCAAGATACTT-CTACTGTCTATATCTTTACTTACAGGGAGCTGTGATCCCAAACTCAACTAAAGGCATCCCAGACCATAGCAGAGGTACTCTAAAAGCAATTAGCTGGTAATGAAAGGAACAATAATAATACATTATACACTAATTGCAATTGAAATCTACCCTGTCTCTAGAGAATATTGTCAGATACCTAGCCAAGAATGGGTTtttcattttctgattgtgtaaatgttcctatttt-tgtttctgtatcATAGTATTTGTAATTAGCAATAAATCACTGTGACATAAGAATTCGGTAACCATCACTTGGAATATTCCTCAATATTTAAATTCAGAGACACAGCAGGCCTGGCACAACTAATC--------ATCTTttcatccattcagaagcagatgagtatctcctactctgagcctggtgccatggtgagcactgggaatagagATAAAAGAAAGTCCAATCATACGGAAATGGAAATAATGCAATAGCAAGAGATAATGCAATAGTGAGAGATGAAAAGAAGAAACCAGATGACTATAAAATAGGCTAAGTGATCAGTTAGAATATCCTGGACTCAGTGCTGTAGGGGCACAAAGATGGA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21185856 1032 - 190850796 cacatatcatatcttggcta-----------------------------------------------------------------------------------agagttatt----------------------------------------------------------------------------------ttcctcaTTAAAA-AA---------AAT----------------AACCACCAACACTATCTTTCTTTTAAGATATAAAA---TAAAATAAATCTTATGTAGATAGTGATCAGACTCTACCAATGAAATCATAATGATCTACTGCTCATCTATTTAACTTTGAGAAAACCTGG-----------------------------------------------------------CTATGGATGCTAGGTAATTACCACAACAAAGGTTTTTATGGCGAA-GAAAGTCTGAATGTATGTTTAAATCCCAATAACTTATCCCTAATCTTTCCTCTTCCTCTCAAGAAGGCAACCCTTAAACTAAAGGAGAAAAGGGATGGATTTTGATGTTAATTAGGTATGTGAGGTT--TGCCTCCTCCTCCTCCTCTGA-----------TGGTCTGTATGGCCATCCCAGATACAGCAGGATTGTACCCCTAAGTGTCCCAAGCCCTACATCAGGAAATGAATTACCTATATTCCAGATATCATATGCAGGATGCTT-CTACTTTCTATATCTTTACTTACAGGGAGCTGTGATCCCAAACCCACCGAAAGGCCTCCCAGA-------AATGGTACTCTAAAAGCAATTAGCTGGTAATGAAAGAAACAGTAACAATACATTATATACTAATTGTAATTGAAATATACTCTGTCTCTAGAGAATATTTTCAGATACCTAGCCAAGAATGTGTTTTTCTTTTCCTGATCGTGTAAATG---CTATTTC-TGTTTGTATATAATAGTATTTGTGATTAGTAATAAATCACGGTGACATAAGAATTCTGCAACCGTCACTTGGAATACTCCTAAATATTTAAATTCAGAGACATAGCAGGCTTGGTGGAACTAATC--------CTTTTttcattcattcagaagctgatgagcatctcctactctgagcctggtgccatggtgagcactggaaacagagATAAAAGAAAGTGCAGTCGTATGGAAATGGAA------------------ATAATGCAATAGTGAGAGATGAAAAGAAGGAATCAAGTTACTATAAAATAGGCTAAGTGATCCGTTAGAATATCCTTGACTCAGTGCTATAGGGGCACAAAGATGGA i calJac3.chr3 C 0 C 0 s canFam3.chr3 3770770 1180 - 91889043 tatccaccatatgttagctaaCTAGCTAACCACCAAAATggggctcctgggtgctcagctagttgggcatctgactcttgattccagctcaggtcatggtcttagggtca-tgggattgagctccacgtctggctccatgctgtgtgtgcagcctgcttgggattttctttctctctgcctctgaccctccctcttccttctaaaaacaataaatatataataaagtaaaacaaCCAAAACTATCAACATTATTCCTCTTTTCAGATATAAAAAAGTAAAATAAATTTTATGTAGATAATTTCTATTCCCTGCCAATGAAATTGGAATGATTTA-TGAGCATCTATTTAATTTTAAGAGAAACTGGAACCCTTTCTATATATTGAGCTTCCAAGTAGCTGTACTTGACCCTACGTATCTACCATATTGTGGGTGGCAGGCAATTGCTCCATCAAAGACTGGTATGGTGAGAGAAAATCTTAA-AAACATTTTATTCTCAATAACTTGTTCCTGAGGTACCCTCCTCTCCTCATCAAAGCAACCCTCAAACCAAAGAGGAAAGAGGAAGGATTCTGAAGCTGGTTAGGCACTGGAACTTTATACTTATTT---CTTCTCTGAGATTCCAACTGTGGTATATAAGACCATCCCAGATAGGGAAAGATTAAAACCCTAAGTATCCAGAGTCCTACATGAGACACTCAATTGCCTAGCTTTCAAATATCATAAGCAGGATACCA-------TCTACCCTTTTATGTGCAGACAGCTGTGATCCTAATCCCAACCAAAGGGGCCCCCTACCTTAGCAAAGGTACTCTAAAA-CATGTAACTAGTAATGAGAGAAATAATAAAAATACATTATACAATAACTGTGGCTGAAACATAC-CTATCTCTAGGAAATATTGTTGGATACCTAGCCAAGAATGAGGTTTT---TTTC---TTATGTGAATATTCCTACTTTGTGTTGGTATATTAGAGTATTTGTAATTAGTAATATATC-CTATAA-ACCAGGATTCTGCAGCCATTATTTGGAATATTCCCCAACATTTATATCCGGAAGCATGACAGACTTAGTAGGAGTAATC--------ACTTCCtcatccatttaaaagctgttgagcatctcctattatgagcctggtgctaggataggcactgggcatagaaatgaaagatagt----------------------------------------------------------------------------------------------------------------------------ctctaatagcacaa--atgga i canFam3.chr3 C 0 C 0 e mm10.chr5 49168610 1547 + 151834684 I a score=11227.000000 s hg38.chr4_KI270790v1_alt 67820 5 + 220246 GGTGT s panTro4.chr4 21456238 5 + 193495092 GGTGT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21631847 5 + 198332218 GGtat i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20243857 5 - 85365473 ggtgt i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16710455 5 + 184069350 GGTGt i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20751960 5 + 189454096 GGTGt i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16347916 5 + 178775436 ggtgt i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19834160 5 - 48547382 GGTGt i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21186888 3 - 190850796 GGT-- i calJac3.chr3 C 0 C 0 e mm10.chr5 49168610 1547 + 151834684 I e canFam3.chr3 3771950 0 - 91889043 C a score=1913.000000 s hg38.chr4_KI270790v1_alt 67825 9 + 220246 GTATATATA s panTro4.chr4 21456243 7 + 193495092 G--TATATa i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21631852 9 + 198332218 atatatata i ponAbe2.chr4 C 0 C 0 s rheMac3.chr5 16710460 7 + 184069350 --atatata i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20751965 3 + 189454096 --ata---- i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16347921 3 + 178775436 --ata---- i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19834165 7 - 48547382 --atatata i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21186891 9 - 190850796 Gtacatata i calJac3.chr3 C 0 C 0 e mm10.chr5 49168610 1547 + 151834684 I e canFam3.chr3 3771950 0 - 91889043 C e nomLeu3.chr20 20243862 0 - 85365473 C a score=1671.000000 s hg38.chr4_KI270790v1_alt 67834 6 + 220246 TATATA-- s panTro4.chr4 21456250 6 + 193495092 tatata-- i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21631861 6 + 198332218 tgtata-- i ponAbe2.chr4 C 0 C 0 s rheMac3.chr5 16710467 8 + 184069350 catatata i rheMac3.chr5 C 0 I 40 s chlSab2.chr27 19834172 8 - 48547382 catatata i chlSab2.chr27 C 0 I 52 e mm10.chr5 49168610 1547 + 151834684 I e macFas5.chr5 20751968 0 + 189454096 C e calJac3.chr3 21186900 0 - 190850796 C e canFam3.chr3 3771950 0 - 91889043 C e papAnu2.chr5 16347924 0 + 178775436 C e nomLeu3.chr20 20243862 0 - 85365473 C a score=910.000000 s hg38.chr4_KI270790v1_alt 67840 1 + 220246 T s panTro4.chr4 21456256 1 + 193495092 t i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21631867 1 + 198332218 t i ponAbe2.chr4 C 0 I 19 s macFas5.chr5 20751968 1 + 189454096 t i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16347924 1 + 178775436 t i papAnu2.chr5 C 0 C 0 e mm10.chr5 49168610 1547 + 151834684 I e chlSab2.chr27 19834180 52 - 48547382 I e rheMac3.chr5 16710475 40 + 184069350 I e calJac3.chr3 21186900 0 - 190850796 C e canFam3.chr3 3771950 0 - 91889043 C e nomLeu3.chr20 20243862 0 - 85365473 C a score=21190.000000 s hg38.chr4_KI270790v1_alt 67841 51 + 220246 GTACATATATACGTACACATGTATCtatacatatacatatatacgtacaca s panTro4.chr4 21456257 51 + 193495092 gtacctatatatgtacacatgtatctatacatatacatatacacatatatc i panTro4.chr4 C 0 I 220 s macFas5.chr5 20751969 51 + 189454096 atacatatatacacacacatatatctgtatatatacatatatatgtaAACA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16347925 51 + 178775436 atacatatatacacacacatatatctgtatatatacatatatatgtaaaca i papAnu2.chr5 C 0 C 0 e mm10.chr5 49168610 1547 + 151834684 I e chlSab2.chr27 19834180 52 - 48547382 I e rheMac3.chr5 16710475 40 + 184069350 I e calJac3.chr3 21186900 0 - 190850796 C e canFam3.chr3 3771950 0 - 91889043 C e nomLeu3.chr20 20243862 0 - 85365473 C e ponAbe2.chr4 21631868 19 + 198332218 I a score=546.000000 s hg38.chr4_KI270790v1_alt 67892 1 + 220246 t s panTro4.chr4 21456528 1 + 193495092 t i panTro4.chr4 I 220 C 0 s macFas5.chr5 20752020 1 + 189454096 t i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16347976 1 + 178775436 t i papAnu2.chr5 C 0 C 0 e mm10.chr5 49168610 1547 + 151834684 I e chlSab2.chr27 19834180 52 - 48547382 I e rheMac3.chr5 16710475 40 + 184069350 I e calJac3.chr3 21186900 0 - 190850796 C e canFam3.chr3 3771950 0 - 91889043 C e nomLeu3.chr20 20243862 0 - 85365473 C e ponAbe2.chr4 21631868 19 + 198332218 I a score=3517.000000 s hg38.chr4_KI270790v1_alt 67893 61 + 220246 gtatctatacatatacatatatgtatctatacatatacatatatgtatctatacatataca s panTro4.chr4 21456529 61 + 193495092 gtatctatacatatacatatacacatatatgtatctatacatatacatatacacatatatg i panTro4.chr4 C 0 C 0 e mm10.chr5 49168610 1547 + 151834684 I e chlSab2.chr27 19834180 52 - 48547382 I e macFas5.chr5 20752021 0 + 189454096 C e rheMac3.chr5 16710475 40 + 184069350 I e calJac3.chr3 21186900 0 - 190850796 C e canFam3.chr3 3771950 0 - 91889043 C e papAnu2.chr5 16347977 0 + 178775436 C e nomLeu3.chr20 20243862 0 - 85365473 C e ponAbe2.chr4 21631868 19 + 198332218 I a score=3599.000000 s hg38.chr4_KI270790v1_alt 67954 42 + 220246 tataTGTATCTATACATATATGTATAGATACATATATATGTG s panTro4.chr4 21456590 42 + 193495092 tatctatacatatacatatatgtacatatacatataTATGTG i panTro4.chr4 C 0 C 0 s canFam3.chr3 3771950 37 - 91889043 tagatg-atagatagatagatagatagatagatagata---- i canFam3.chr3 C 0 C 0 e mm10.chr5 49168610 1547 + 151834684 I e chlSab2.chr27 19834180 52 - 48547382 I e macFas5.chr5 20752021 0 + 189454096 C e rheMac3.chr5 16710475 40 + 184069350 I e calJac3.chr3 21186900 0 - 190850796 C e papAnu2.chr5 16347977 0 + 178775436 C e nomLeu3.chr20 20243862 0 - 85365473 C e ponAbe2.chr4 21631868 19 + 198332218 I a score=28136.000000 s hg38.chr4_KI270790v1_alt 67996 65 + 220246 TATATATACATATATACATGTACATATACACATGTATATATATACATGTGTATGTATATATGTAC s panTro4.chr4 21456632 63 + 193495092 TATCTatacatatatacatgtacatatacacatgtatatata--catatgtacgtatatatgtac i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21631887 65 + 198332218 tatatgtacatatatacatatacatatatgtacatatatacatatacgtatatgtatatatgtac i ponAbe2.chr4 I 19 C 0 s calJac3.chr3 21186900 65 - 190850796 catatatacacacatgtgtgtacatatgtacatacatacacatatgtatgtatgtacatatgaac i calJac3.chr3 C 0 C 0 s canFam3.chr3 3771987 60 - 91889043 gatagatagaggcataggtgtggatatggagatagatatagATACATAGATA-----ATATATAC i canFam3.chr3 C 0 C 0 e mm10.chr5 49168610 1547 + 151834684 I e chlSab2.chr27 19834180 52 - 48547382 I e macFas5.chr5 20752021 0 + 189454096 C e rheMac3.chr5 16710475 40 + 184069350 I e papAnu2.chr5 16347977 0 + 178775436 C e nomLeu3.chr20 20243862 0 - 85365473 C a score=7713.000000 s hg38.chr4_KI270790v1_alt 68061 19 + 220246 ATAT--------ATATATACATGTTCA s panTro4.chr4 21456695 19 + 193495092 acat--------atatatacatGTTCA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21631952 27 + 198332218 atatatatgtacatatatacatGTTCA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20243862 19 - 85365473 atgt--------atatatacatgttca i nomLeu3.chr20 C 0 C 0 s calJac3.chr3 21186965 17 - 190850796 --at--------atatatacatGTTCA i calJac3.chr3 C 0 C 0 s canFam3.chr3 3772047 9 - 91889043 -------------TGCACTCCT----- i canFam3.chr3 C 0 C 0 e mm10.chr5 49168610 1547 + 151834684 I e chlSab2.chr27 19834180 52 - 48547382 I e macFas5.chr5 20752021 0 + 189454096 C e rheMac3.chr5 16710475 40 + 184069350 I e papAnu2.chr5 16347977 0 + 178775436 C a score=38062.000000 s hg38.chr4_KI270790v1_alt 68080 30 + 220246 GGGTTGGAGAAAAggatagta--aggcaaggg s panTro4.chr4 21456714 30 + 193495092 GGGTTGGAGAAAAGGATAGTA--AGGCAAGGG i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21631979 30 + 198332218 GGGTCGGAGAAAAggatagta--aggcaaggg i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20243881 30 - 85365473 gggttggagaaaaggatagta--aggcaaggg i nomLeu3.chr20 C 0 C 0 s calJac3.chr3 21186982 30 - 190850796 GGATCAGAGAAAAGGATAGTA--AGGCAAGAG i calJac3.chr3 C 0 C 0 s mm10.chr5 49170157 32 + 151834684 ggggtcgggaagAATATAGCAGGAGGGAATGG i mm10.chr5 I 1547 C 0 s canFam3.chr3 3772056 30 - 91889043 GGTTGGGAGGAAAGGGCAGTT--AGGCAAGGA i canFam3.chr3 C 0 C 0 e chlSab2.chr27 19834180 52 - 48547382 I e macFas5.chr5 20752021 0 + 189454096 C e rheMac3.chr5 16710475 40 + 184069350 I e papAnu2.chr5 16347977 0 + 178775436 C a score=3276.000000 s hg38.chr4_KI270790v1_alt 68110 1 + 220246 t s panTro4.chr4 21456744 1 + 193495092 T i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21632009 1 + 198332218 t i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20243911 1 - 85365473 t i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16710515 1 + 184069350 t i rheMac3.chr5 I 40 C 0 s chlSab2.chr27 19834232 1 - 48547382 T i chlSab2.chr27 I 52 C 0 s calJac3.chr3 21187012 1 - 190850796 T i calJac3.chr3 C 0 C 0 s mm10.chr5 49170189 1 + 151834684 T i mm10.chr5 C 0 C 0 s canFam3.chr3 3772086 1 - 91889043 T i canFam3.chr3 C 0 C 0 e macFas5.chr5 20752021 0 + 189454096 C e papAnu2.chr5 16347977 0 + 178775436 C a score=651600.000000 s hg38.chr4_KI270790v1_alt 68111 181 + 220246 tctagagaaggtaatagctaagctgagccttaaaggGCAAAAAAAGCATATGAGGCATAGTCTAGACCACAATCTAACTGGGGAAGCAAGAAATAAAATATTAATGCAAAAGGGTTGAATTGGATAAGCA------GAC--TAAATACCGTAAGCAAGGAAAATAAGAAACAAGAAGCTACATTTAAGA s panTro4.chr4 21456745 172 + 193495092 TCTAGAGAAGGTAAT---------GAGCCTTAAAGGGCAAAAAAAGCATATGAGGCATAGTCTAGACCACAATCTAACTGGGGAAGCAAGAAATAAAATATTAATGCAAAAGGGTTGAATTGGATAAGCA------GAC--TAAATACTGTAAGCAAGGAAAATAAGAAACAAGAAGCTACATTTAAGA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21632010 181 + 198332218 tctagagaaggtaatagctaagctgagccttaagggGCAAAAAAAGCATATGAGGCATAGTCTAGACCACAATCTAACTGGGGAAGCAAGAAATAAAATATTAATGCAAAAGGGTTGAATTGGATAAGCA------GAC--TAAATACTGTAAGCAAGGAAGATAAGAAACAAGAAGCTACATTTCAGA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20243912 180 - 85365473 tctagagaaggtaatagctaagctgagtcttaaaggaC-AAAAAAGCATATGAGGCATAGTGCAGACCACAATCTAACTAGGGAAGCAAGAAATAAAATATTAATACAAAAGGGTTGAATTGGGTAAGCA------GAC--TAAATACTGTAAGCAAGGAAGATAAGAAACAAGAAGCTACATTTAAGG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16710516 181 + 184069350 tctagagaaggtaatagctaagctgaatcttaaaggGCAAAAAAGGCATATGAGGCATAGTCTAGACCACACTCTAACTGGGGAGGCAAGAGATAAAATATTAATGCAAAAGGGTCGAATTGGATAAGCA------GAC--TAAATACTGTAAGCGAGGTAGATAAGAAACAAGAAGCTACATTTAAGA i rheMac3.chr5 C 0 I 310 s macFas5.chr5 20752021 181 + 189454096 tctagagaaggtaatagctaagctgagtcttaaaggGCAAAAAAGGCATATGAGGCATAGTCTAGACCACACTCTAACTGGGGAGGCAAGAGATAAAATATTAATGCAAAAGGGTCAAATTGGATAAGCA------GAC--TAAATATTGTAAGCGAGGTAGATAAGAAACAAGAAGCTACATTTAAGA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16347977 181 + 178775436 tctAGAGAAGGTAATAGCTAAGCTGAGTCTTAAAGGGCAAAAAAGACATATGAGGCATAGTCTAGACCACACTCTAACTGGGGAAGCAAGagataaaatattaatgcaaaagGGTCGAATTGGATAAGCA------GAC--TAAATACTGTAAGCGAGGTAGATAAGAAACAAGAAGCTACATTTAAGA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19834233 181 - 48547382 TCTAGAGAAGGTAATAGCTAAGCTGAATCTTAAAGGGCAAAAAAGGCATATGAGGCATAGTCTAGACCACACTCTAACTGGGGAAGCAAGAGATAAAATATTAATGCAAAAGGGTTGAATTGGATAAGCA------GCC--TAAATACTGTAAGCGAGGTAGATAAGAAACAAGAAGCTACATTTAAGA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21187013 180 - 190850796 TCTAGAGAAGGTAATAGCGAAGCTGAGTCTTAA-GGATAAAAAATACATATAAGGCATAGTCTAGACAAAAATCTAACTGGGGAAGCAGTAAATAAAATATTAATGAAAAATGTTTGAATTGGATAACCA------GAC--TAAATATTATAAGAAAGGAAAATAAGAAACAAGAAGCTACATTTACAA i calJac3.chr3 C 0 C 0 s mm10.chr5 49170190 149 + 151834684 TCCAGAGAAGGTAACAGCTGAAGAGA----------------------------GCTTAGTCTAGAC----AGCTTATTATGGGTAAAATAATTACAATATTAATGATGTAGAGTTGGACTGGAGAAGTGAGTGGTAAA--TAAATACCATAAGCAATGGAGATAAGA------AAATTATATGAAAGA i mm10.chr5 C 0 C 0 s canFam3.chr3 3772087 182 - 91889043 TTCAAAGAAGACAATAGCTGGGCTGAGTCTTAAAAGGACAAAAAAACATATGAGGCATAGTCTAGACCACAGTCTAATTGAGGAAACAAGAAATAAAATATTAATG-AAGAGGGTTGAGTTGCCTAAGCA------GATTGTAAATACTGTAAGCAAGGGAGATGAGTAACAAGAGTCTACATGTCAAA i canFam3.chr3 C 0 C 0 a score=174778.000000 s hg38.chr4_KI270790v1_alt 68292 45 + 220246 AGCAGCTGC-TTCTCTGTATTTCGAACTATGTATGAGGTTTAAATA s panTro4.chr4 21456917 45 + 193495092 AGCAGCTGC-TTCTCTGTATTTTGAACTATGTATGAGGTTTAAATA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21632191 45 + 198332218 AGCAGCTGC-TTCTCTGTATTTCGAACTATGTATGAGGTTTAAATA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20244092 45 - 85365473 AGCAGCTGC-TTCTCTGTATTTCGAACTATGTATGAGGTTTAAATA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16711007 45 + 184069350 AGCAGCTGC-TTCTCTGTATTTCAAACTACGTATGAGGTTTAAACA i rheMac3.chr5 I 310 C 0 s macFas5.chr5 20752202 45 + 189454096 AGCAGCTGC-TTCTCTGTATTTCAAACTATGTATGAGGTTTAAACA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16348158 45 + 178775436 AGCAGCTGC-TTCTCTGTATTTCAAACTATGTATGAAGTTTAAACA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19834414 45 - 48547382 AGCAGCTGC-TTCTCTGTATTTCAAACTATGTATGAGGTTTAAACA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21187193 45 - 190850796 AGCAGCTGT-TTCTCTGTATTTTGAACTATGAATGAGGTTTGAATA i calJac3.chr3 C 0 C 0 s mm10.chr5 49170339 46 + 151834684 TGGAACTGTATTATCTGTGCTCTAAACAACATGAGAGGTTTGAACA i mm10.chr5 C 0 I 528 s canFam3.chr3 3772269 45 - 91889043 GGAAGCCAT-TTATCTGGGTTTCGAACTAAGTATGGGGTTTGAATA i canFam3.chr3 C 0 C 0 a score=129984.000000 s hg38.chr4_KI270790v1_alt 68337 37 + 220246 GTCAAAGGACAGAAGGCAAATTATGCTTCCTTTAATT s panTro4.chr4 21456962 37 + 193495092 GTCAAAGGACAGAAGGCAAATTATGCTTCCTTTAATT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21632236 37 + 198332218 GTCAAAGGACAGAAGGCAAATTATGCTTCCTTTAATT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20244137 36 - 85365473 GTCAAA-GACAGAAGGCAAATTATACTTCCTTTAATT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16711052 37 + 184069350 GCCAAAGGACAGAAGGCAAATTATGCTTCCTTTAATT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20752247 37 + 189454096 GCCAAAGGACAGAAGGCAAATTATGCTTCCTTTAATT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16348203 37 + 178775436 GCCAAAGGACAGAAGGCAAATTATGCTTCCTTTAATT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19834459 37 - 48547382 GCCAAAGGACAGAAGGCAAATTATGTTTCCTTTAATT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21187238 36 - 190850796 GTC-AAGGGCAGAAGGCAAATTATGCTTCCTTTAATT i calJac3.chr3 C 0 C 0 s canFam3.chr3 3772314 36 - 91889043 GTCAGAGGACAG-AGGCAAATCATGCTCCCTTAGATT i canFam3.chr3 C 0 C 0 e mm10.chr5 49170385 528 + 151834684 I a score=1487362.000000 s hg38.chr4_KI270790v1_alt 68374 462 + 220246 CTCTCTTATAGTCCCCAATTTTATTCCTTCATGACACTCTTCACAAGTGAGTAATAACTTATTAAAAA---ctgt-ccccccttctaag---ctgtaaattgca-gaggatagggaccaagtatgtttt---------tttctccattgcattgttgccattaattgagt-agttcttaccaccaagcacctgtttagttaatatttgttaaatagttgaaGAATTAGATTAATGAATTGAATTTCATAAGATGCTAGAAAA-GT---AAGATGTTTTATAAGATATTCATGGTTTGGTTTAGTGATGATGCCATGTAAATTAAAAATAAAATTTGGAAGGAGCAACTAGAATTAAGGAAGGGCA--------AATCAGAGGGTAGGAAAAGATTACTATTAGCATTTCCAGCAAAATTTAGAGCTTGTATTGTCTTGATGTTTTAGTATAAAAGTGGTATTATGAAAAAAGTATATTAAAGGATTAACTGG s panTro4.chr4 21456999 462 + 193495092 CTCTCTTATAGTCCCCAATTTTATTCCTTCATGACACTCTTCACAAGTGAGTAATAACTTATTAAAAA---ctgt-ccccccttctaag---ctgtaaattaca-gaggataggcaccaagtatgtttt---------tttctccattgcattgctgccattaattgagt-agttcttaccaccaagcacctgtttagttaatatttgttaaatagttgaaGAATTAGATTAATGTATTGAATTTCATAAGATGCTAGAAAA-GT---AAGATGTTTTATAAGATATTCATGGTTTGGTTTAGTGATGATGCCATGTAAATTAAAAATAAAATTTGGAAGGAGCAACTAGAATTAAGGAAGGGCA--------AATCAGAGGGTAGGAAAAGATTACTATTAGCATTTCCAGCAAAATTCAGAGCTTGTATTGTCTTGATGTTTTAGTATAAAAGTGGTATTATGAAAAAGGTATATTAAAGGATTAACTGG i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21632273 463 + 198332218 CTCTCTTATACTCCCAAATTGTATTCCTTCATGACACTCTTCACAAGTGAGTAATAACTTATTAAAAA---ctgtcccccccttctaag---ctgtaaattaca-gaggatagggaccaagtatgtttt---------tttctccattgcattgctgccattaattgcat-agttcttaccaccaagcacctgtttagttaatatttgttaaatAGTCGAAGAATTAGATTAATGAATTGAATTTCATAAGATGCTAGAAAA-GT---AAGATGTTTTATAATATATTCATGGTTTGGTTTAGTGATGATGACATGTAAATTAAAAATAAAATTTGGAAGGAGCAACTAGAATTAAGGAAGGGCA--------AATCAGAGGGTAGGAAAAGATTACTATTAGCATTTCCAGCAAAATTTAGAGCTTGTATTGTCTTGATGTTTTAGTGTAAAAGTGGTATTATGAAAAAGGTATATTAAAGGATTAACTGG i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20244173 469 - 85365473 CTCCCTTATAGTCCCCAATTTTATTCCTTCATGACACTCTTCACAAGTGAGTAATAACTTATTAAAAA---ctgt-cccgccttctaaa---ctgtaaattaca-gaggatggggaccaagtatg-ttt---------tttctccattgcattgctgccattaattgcgt-agttcttaccaccaagcacctgtttagttaatatttgttaaatagttgaaGAATTAGATTAATGAATTGAATTTCATAAGATGCTAGAAAA-GT---AAGATGTTTTATAATATATTCATGGTTTGGTTTAGTGATGATGCCATGTAAATTAAAAATAAAATTTGGAAGGAGCAACTAGAATTAAGGAAGGGCAAATCAGAGAATCAGAGGATAGGAAAAGATTACTATTAGCATTTCCAGCAAAATTTAGAGCTTGTATTGTCTTGATGTTTTAGTATAAAAGTGGTATTATGAAAAAGGTATATTAAAGGATTAACTGG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16711089 462 + 184069350 CTCTCTTATAGTCCCCAATTTTATTCCTTCATGACACTCTTCACAAGTGAGTAA-AActtattaaaaa--tctgt-tcctccttctaag---ctgtaaattgca-gaggatagggaccaggtttgtttt---------tttctccatcgcattgctgccattaattgcat-agttcttaccactaggcacctgtttagttaatatttgttaaatagttgaaGAATTAGACTAGTGAATTGAATTTTATAAGATGCTAGAAAA-GT---AAGATGTTTTATAATGTATTCATGGTTTGGTTTAGTGATGATGCTATGTAAATTAAAAATAAAAGTTGGAAGGAGCAACTAGAATTAAGGAAGGACA--------AACCAGAGGGTAGGAAAAGATTACTATTAGCATTTCAAGCAAAATTTAGAGCTTGTATTGTCTTGATGTTTTAGTATAAAACTGATACTATGAAAAAGGTATATTAAAGGATTAACTGG i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20752284 463 + 189454096 ctctcttatagtccccaattttattccttcatgacactcttcacaagtgagtaataacttattaaaaa--tctgt-tcctccttctaag---ctgtaaattgca-gaggatagggaccaggtttgtttt---------tttctccatcgcattgctgccattaattgcat-agttcttaccactaggcacctgtttagttaatatttgttaaatagttgaaGAATTAGACTAGTGAATTGAATTTTATAAGATGCTAGAAAA-GT---AAGATGTTTTATAATGTATTCATGGTTTGGTTTAGTGATGATGCTATGTAAATTAAAAATAAAAGTTGGAAGGAGCAACTAGAATTAAGGAAGGACA--------AACCAGAGGGTAGGAAAAGATTACTATTAGCATTTCAAGCAAAATTTAGAGCTTGTATTGTCTTGATGTTTTAGTATAAAACTGATACTATGAAAAAGGTATATTAAAGGATTAACTGG i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16348240 463 + 178775436 CTCTCTTATAGTCCCCAATTTTATTCCTTCATGACACTCTTCACAAGTGAGTAATAACTTATTAAAAA--TCTGT-CCCTCCTTCTAAG---CTGTAAATTGCA-GAGGATAGGGaccaggtttgtttt---------tttctccatcGCATTGCTGCCATTAATTGCAT-AGTTCTTACCACTAGGCACCTGTttagttaatatttgttaaatagttGAAGAATTAGACTAGTGAATTGAATTTTATAAGATGCTAGAAAA-GT---AAGATGTTTTATAATGTATTCATGGTTTGGTTTAGTGATGATgctatgtaaattaaaaataaaagttggaaggaGCAACTAGAATTAAGGAAGGACA--------AACCAGAGGGTAGGAAAAGATTACTATTAGCATTTCAAGCAAAATTTAGAGCTTGTATTGTCTTGATGTTTTAGTATAAAACTGATACTATGAAAAAGGTATATTAAAGGATTAACTGG i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19834496 463 - 48547382 ctctcttatagtccccaattttattccttcatgacactcttcacaagtgagtaataacttattaaaaa--tctgt-ccctccttctaag---ctgtaaattgca-gaggatagggaccaggtttgttta---------tttctccatcgcattgctgccattaattgcat-agttcttaccactaggcacctgtttagttaatatttgttaaatagttgaaGAATTAGACTAGTGAATTGAATTTTATAAGATGCTAGAAAA-GT---AAGATGTTTTATAATGTATTCATGGTTTGGTTTAGTGATGATGCTATGTAAATTAAAAATAAAAGTTGGAAGGAGCAACTAGAATTAAGGAAGGGCA--------AACCAGAGGGTAGGAAAAGATTACTATTAGCATTTCAAGCAAAATTTAGAGCTTGTATTGTCTTGATGTTTTAGTATAAAACTGATACTATGAAAAAGGTATATTAAAGGATTAACTGG i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21187274 445 - 190850796 CTCTCTTTTAGTCCCCAATTTTATTCCTTCATGACATTCATCACAAGTGAGTAATCACTTATAAAAAt---ctgt-ccccacttctaag---ctgtaaattaca-aaggataggggccaggtattttttttgttgttgttgttccattgcattgctg-cactgattgcat-agctcttatcaccaagcac-----------atatttgttaaatagttgaagaat-----taatgaatTGGATTTCATAAGATGCTAGAAAA-GT---AAGGTATTTTATAATATATTCATGGTTTGGTTTAGTGATGATG--------ATTAAAATTAAAATTTGGAAGGAGCAACTGGAATTAAGGAAGGGCA--------AATCAGAGGGT-GAAAAAGATTACCAGTAGCATTTCAAGCAAAATTTAGAGCTTCTATTGTCTTGATTTTTTAGTATAAAAGTGATATTATGAAAAAGGTACATTAAAGAATTAACTGG i calJac3.chr3 C 0 C 0 s mm10.chr5 49170913 381 + 151834684 CTCTTGTAGAGTTCATAATTATCTTCCTTCATGACAATGTTAACAAGCAACTGCTGACCAA--AAAAA--TCCAT---ATCATACTAAAGTTCCGTA------A-GGATATAGGTATCATGTGTGCCTT---------GCTCTCCATGATATCAATGCC-TTCATTACACAAGTTCTT------------------------------TCAAAAAGTT------------CAGTGTACCAGCATCCATATTGATTTAGCGAA-GTCTAACGATGCAAGATGGAATATGCA--GTTTAGTAAAATGTAGATATGATGTGAA-TAAAAATAAAACTCCATACAGGTGAGAAAAATGA--TAAGGTTA--------AATCAAAAGGTAGGAAATGATGACT-TGAATACTACGGCTGATATTTTGAG---------------------AGTATGAAATT-------TCCAGAAAGTATATCCAGG--CTTATTTG i mm10.chr5 I 528 C 0 s canFam3.chr3 3772350 388 - 91889043 TTCTCCCATAATTCCTAACTATTCCCTTTCATGAGATTCTTAACAAGTAAGCAGTCACttattaaatatctctac-ccccacttctagg---ctgtaaattacatgagggtaaaagtcaaatacgttct---------gttcccctttgcattgcttcctttattagcat-ggtacttgtcaaggagtgtgtgtctaggaaat-tttgttaaaCAGTCAAAGGGCTGAATTAATTAACTGATGTGCTCAAGATGCTAAAAAATGT---AAGACATTTTATAACACACTCGTG--TTGGCACACTGATAATACCATAGAGATTAAAAATAAAA-TTAGGGGGAACAGCAGGAATTAGGGAAGTTTT--------CTTCAGAAGATGGGAACAGATTACTGT-----------------------------------------TTTCAGTA----------------------------------ATCAGCTGG i canFam3.chr3 C 0 C 0 a score=373526.000000 s hg38.chr4_KI270790v1_alt 68836 121 + 220246 GTTCTGTGAGCCAAAAAAACTAGAGGAGGAgtgaatagctaggtgaatagctaggCAGCTGGTGTCTCACTCGTTCTGGTT---------GGA--AAGGGATGAAACC-TATTCTAAAGTGTTTTCAGTAGGT s panTro4.chr4 21457461 121 + 193495092 GTTCTGTGAGCCAAAAAAACTAGAGGAGGAgtgaatagctaggtgaatagctaggCAGCTGGTGTCTCACTCATTCTGGTT---------GGA--AAGGGATGAAACC-TATTCTAAAGTGTTTTCAGTAGGT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21632736 121 + 198332218 GTCCTATGAGCCAAAAAAACTAGAGGAGGAgtgaatagctaggtgaatagctaggCAGCTGGTGTCTCATTCATTCTGGTT---------GGA--AAGGGATGAAACC-TATTCTAAAGTGTTTTCAGTAGGT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20244642 121 - 85365473 GTCCTGTGAGCCAAAAAAACTAGAGGAGGAgtgaatagctaggtgaatagctaggCAGCTGGTGTCTCACTCATTCTGGTT---------GGA--AAGGGATGAAACC-TATTCTAAAGTGTTTTCAGTAGGT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16711551 120 + 184069350 GTCCTGTGAGCC-AAAAAACTAGAGGAGGAGTGAATAGCTAGGCAAATAGCTAGGCAGCTGGTGTCTCACTCATTCTAGTT---------GGA--AAGGGATGAAACC-TGTTCTAAAGTGTTTTCAGTAGGT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20752747 120 + 189454096 GTCCTGTGAGCC-AAAAAACTAGAGGAGGAGTGAATAGCTAGGCAAATAGCTAGGCAGCTGGTGTCTCACTCATTCTAGTT---------GGA--AAGGGATGAAACC-TGTTCTAAAGTGTTTTCAGTAGGT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16348703 120 + 178775436 GTCCTGTGAGCC-AAAAAACTAGAGGAGGAGTGAATAGCTAGGCAAATAGCTAGGCAGCTGGTGTCTCACTCATTCTAGTT---------GGA--AAGGGATGAAACC-TGTTCTAAAGTGTTTTCAGTAGGT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19834959 120 - 48547382 GTCCTGTGAGCC-AAAAAACTAGAGGAGGAGTGAATAGCTAGGCAAATAGCTAGGCAGCTGGTGTCTCACTGATTCTAGTT---------GGA--AAGGGATGAAACC-TGTTCTAAAGTGTTTTCAGTAGGT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21187719 120 - 190850796 GTTCTGTGACCC-AAAAAATTAGAGGAGGAgtgaatagctaggtgaatagctaggCAGCTGGTGTCTCACTCATTCTAGTT---------GTA--AAGGGATGAAAAC-TATTCTAAAGTGTTTTCAGTAGGT i calJac3.chr3 C 0 C 0 s mm10.chr5 49171294 111 + 151834684 CACATGTGGATC-A------CAGTGGGTGTGTTCAGAGTCAGATG-----------AGTTTTTGTTTTAATTCTTGTCATTTTTTAATTAGGAACAAAAGATGAAGTAGCATTCTAAAGCATTTTTAGT---- i mm10.chr5 C 0 C 0 e canFam3.chr3 3772738 0 - 91889043 C a score=1192528.000000 s hg38.chr4_KI270790v1_alt 68957 389 + 220246 GTGGGAAGGGAAGAAAAGAATAGCTATCAAGGAATCAATTGTTTGTGAATAGGATGGCATAGACCTTATTTGGCAAGAaagaacagctacataatttgctgtgtctg-gggaaaaataaattgcagggccccttgtttaaagagtatgaataatctcaagacagtgacacaagag-gctaaaataag-------------------------------------ggtggggtccttcta------------------------------------agtatgtggccctttg-------------------------------------------------------------------------------------------------------------------caaccag----------------------------------------------------acaggttgtatatccatgaagctggcc-GGTTGTCAGGAATCTC--ATATaaagaaaggaggaaagaagaaagcaaagaaa----ggatgaat------gaagggaggaag---aaaaaataaaAGGTTTAGGGATGTTTATTTCAGCATATACTGAAGTTGTGTGACATAGATA-TACATAT s panTro4.chr4 21457582 389 + 193495092 GTGGGAAGGGAAGAAAAGAATAGCTATCAAGGAATCAATTGTTTGTGAATAGGATGGCATAGACCTTATTTGGCAAGAaagaacagctacataatttgctgtgtccg-gggaaaaataaattgcagggccccttgtttaaagagtttgaataatctcaagacagtgacaccagag-gctaaaataag-------------------------------------ggtggggtccttcta------------------------------------agtatgcggccctttg-------------------------------------------------------------------------------------------------------------------caaccag----------------------------------------------------acaggttgtatatccatgaagctggcc-GGTTGTCAGGAATCTC--ATATaaagaaaggaggaaagaagaaagcaaagaaa----ggatgaat------gaagggaggaag---aaaaaataaaaggTTTAGGGATGTTTATTTCAGCATATACTCAAGTTGTGTGACATAGATA-TACATAT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21632857 389 + 198332218 GTGGGAAGGGAAGAAAAGAATAGCTATCAAGGAATCAATTGTTTGTGAATAGGATGGCATAGACCTTATTTGGCAAGcaagaacagctacataatttgctgtgtccg-gggaaaaataaattgcagggccccttgtttaaagagtatgaataatctcaagacagtgataccagag-gctaaaataag-------------------------------------ggtggggtccttcta------------------------------------agtatgtagccctttg-------------------------------------------------------------------------------------------------------------------caaccag----------------------------------------------------acaggctgtatatccatgaagctggcc-GGTTGTCAGGAATCTC--ATATaaagaaaggaggaaagaagaaagcaaagaaa----gaacgaat------gaagggaaCAAG---AAAAAATAAAAGGTTTAGGGATTTTTATTTCAGCATATACTCAAGTTGTGTGACATACATA-TACATAT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20244763 390 - 85365473 GTGGGAAGGGAAGAAAAGAATAGCTATCAATGAATCAATTGTTTGTGAATAGGATGGCACAGACCTTATTTGGCAAGcaagaacagctacataatttgctgtgtccg-gggaaaaataaattgcagggccccttgtttaaagagtatgaataatctcaagacagtgacaccagag-gctaaaataag-------------------------------------ggtggggtccttcta------------------------------------agtatgtggccctttg-------------------------------------------------------------------------------------------------------------------cacccag----------------------------------------------------acaggttgtatatccatgaagctggcc-GGTTGTCAGGAATCTC--ATATaaagaaaggaggaaagaagaaagcaaagaaa----gaatgaat------gaagggaggaag---aaaaaataaaAGGTTTAGGGATTTTTATTTCAGCGTATACTCAAGTTGTGTGACACAAATATTACATAT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16711671 392 + 184069350 ATGGGTAGGGAGGAAAGGAATAGTTATCAAGGAATCAATTGTTTGTGAATAGGATGGCATAGACCTTATTTGTCAAGcaagaacagctacataatgtgctgggtcc--aggaaaattaaattgtggggccccttgtttaaagagtatgaataatctcaagacagtgacaccagag-gctaaaataaa-------------------------------------ggtggggcccttcta------------------------------------agtatagggccctttg-------------------------------------------------------------------------------------------------------------------caaccag----------------------------------------------------acaggttgtatatccatgaaactggcc-TGTTGTCAGGAATCTC--ATGTAAATaaaggaggaaagaagaaagcaaagaaa----gaatgaat--gaaggaaggaaggaag---aaaAAATAAAAGGTTTAGGGATTTTTATTTCAGCATATACTCAAATTGTGTGACATAGATA-TACATAT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20752867 392 + 189454096 ATGGGTAGGGAGGAAAGGAATAGTTATCAAGGAATCAATTGTTTGTGAATAGGATGGCATAGACCTTATTTGTCAAGcaagaacagctacataatgtgctgggtcc--aggaaaattaaattgtggggccccttgtttaaagagtatgaataatctcaagacagtgacaccagag-gctaaaataaa-------------------------------------ggtggggcccttcta------------------------------------agtatagggccctttg-------------------------------------------------------------------------------------------------------------------caaccag----------------------------------------------------acaggttgtatatccatgaaactggcc-TGTTGTCAGGAATCTC--ATGTaaataaaggaggaaagaagaaagcaaagaaa----gaatgaat--gaaggaaggaaggaag---aaaaaataaaaGGTTTAGGGATTTTTATTTCAGCATATACTCAAATTGTGTGACATAGATA-TACATAT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16348823 392 + 178775436 ATGGGTAGGGAGGAAAGGAATAGTTATCAAGGAATCAATTGTTTGTGAATAGGATGGCATAGACCTTATTTGTCAAGCAAGAACAGCTACATAATGTGCTGGGTCC--AGGAAAATTAAATTGTGGGGCCCCTTGTTTAAAGAGTATGAATAATCTCAAGACAGTGACACCAGAG-GCTAAAATAAA-------------------------------------GGTGGGGCCCTTCTA------------------------------------AGTATAGGGCCTTTTG-------------------------------------------------------------------------------------------------------------------CAACCAG----------------------------------------------------ACAGGTTGTATATCCATGTAACTGGCC-TGTTGTCAGGAATCTC--ATGTaaataaaggaggaaagaagaaagcaaagaaa----gaatgaat--gaaggaaggaaggaag---aaaaaataaaaggtttaggGATTTTTATTTCAGCATATACTCAAATTGTGTgacatagata-tacatat i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19835079 396 - 48547382 GTGGGTAGGGAGGAAAGGAATAGTTATCAAGGAATCAATTGTTTGTGAATAGGATGGCATAGACCTTATTTGTCAAGcaagaacagctacacaatgtgctgggtcc--aggaaaattaaattgcggggccccttgtttaaagactatgaataatctcaagacagtgacaccagag-gctaaaataaa-------------------------------------ggtggggcccttcta------------------------------------agtatagggccctttg-------------------------------------------------------------------------------------------------------------------caaccag----------------------------------------------------acaggttgtatatccatgaaactggcc-TGTTGTCAGGAGTCTC--ACGTaaataaaggaggaaagaagaaagcaaagaaagaaggaaggaag--gaaggaaggaaggaag---AAAAAATAAAAGGTTTAGGGATTTTTATTTCAGCATATACTCAAATTGTGTGACATAGATA-TACATAT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21187839 390 - 190850796 GTGGGAAGGGAGGAAGAGAATAGCTATCAAGGAATCAATTCTTTGTGAACAGGATGGCATCGACCTTATTTG----GCAATAATAgttacataatttgctgggtcca-gggaaaaataaattgcaggagctcttatttaaagagtatgaataatctcaagacagtgacactagag-gccaaagtaa-----------------------------------------ggtgtccttcta------------------------------------agtatggggcccttta-------------------------------------------------------------------------------------------------------------------caataag----------------------------------------------------aaaggtagtatatccatgaagctggcc-TGTGAGCAAGCATCTC--ACATaaagaaatgaggaaagaagaaagcaaacaaa----gaatgaaaaagaatgaaggaatgaaggaaaaaaaacaaaaTGTTTAGGGATTTTTATTTCAGCATATACTCAAGTTGAGTGACATATATA-TATATAT i calJac3.chr3 C 0 C 0 s mm10.chr5 49171405 338 + 151834684 ------------GGAGGATGTAGCTATCAGTAAGTCTCTTGTCT---AATATGACAG-GCAAGCTTGACTTGGAAAGCATAAA-AActccataatttgctaggtctg-gtacaaaacaaatttcagaatcctttgatttgaaatcaagaataatttcaaaatactaacagtagag-cattaaaTACA-------------------------------------------GTTCTTGTA------------------------------------A-TATCAGG-------------------------------------------------------------------------------------------------------------------------------AG----------------------------------------------------ATGGGTGA------CATGGGATGACCC-TATTAACTTGTACCTCTAAATCGAAAGAAGGTGGCAAGAGAAAAGAATGTGAG----AAATGATC--------------AAAG---GAAAAATTAAACTTGCATAGAT-TCTATTTGACCACATGGTCAAGTTGATTGACAAATCAA-CACAT-- i mm10.chr5 C 0 C 0 s canFam3.chr3 3772738 620 - 91889043 GTGGGGAGGGAGGAAAGGAATGACTATCAAGAAACAA-----TCGTGCATGGAATATCTGAGACTTGATCTGGCAAGCAGATATAgctacatcatatgctaggcccatatcaaaattaaattgcaagatacctcgtttaaaaggtattaataatttcttgatcatgacaacagagcattaaaataagTATCAGTCTTggggcccccgggtggctcagttagttaagtggctgccttctgctcaggtcatgatcccagggtcctgggatggagcccagcatccggctccctgcttagcagagggtctgcttctctctctgcctctgcctgttgctcccccagcttgtgcATGCAAGctctctctctctctctctctctctGTCAaatcaatcaatcaatcaatcaatcaatcaaACtttaaaaaaaaataaaaataaaataaGCATTAGTCCTTCTAATCCTGGGCACAGGCTGCACACCCATGAAGCTGGCCTTGTTGGTTAACATTCC--ATATTaagaa-------aagaaggaaaaaaagcag----aaatgaaa-----ggaaggaagcaga---aaaaaagaaagGGTTTAGAGAT-GTTATTTGACCATAAACTCAAAATGTATGACACGGAGA-CACGCAA i canFam3.chr3 C 0 C 0 a score=884656.000000 s hg38.chr4_KI270790v1_alt 69346 314 + 220246 ATTAAAA------------ATAACCTTTAATTGTATGGTGTGTCATATCTCCTAAGTT----TAACATGTGATCCCAATGGGTCATTACTATCTTCAATGCACAGTACATG--------TTATTAG-TTTATTGTTTTGTAGAGAAGGGAACTAGACAACATGTTTGGACCAG-----TGTATCAGTAAGGCTATGCTTATAGACAAAACTGATCCTCTCTCTC-TCTTAAAATTAGGTCTtataattttaagctacat-aataga--aacaatgtccaatcaaggcaggtaagtatcccattaatctgctgaatatttctcagtgcagaaccactacgtctatgtat s panTro4.chr4 21457971 314 + 193495092 ATTAAAA------------ATAACCTTTAATTGTATGGTGTGTCATATCTCCTAAGTT----TAACATGTGATCCCAATGGGTCATTACTATCTTCAATGCACAGTACATG--------TTATTAG-TTTATTGTTTTGTAGAGAAGGGAACTAGACAACATGTTTGGACCAG-----TGTATCAGTAAGGCTATGCTTATAGACAAAACTGATCCTCTCTCTC-TCTTAAAATTAGGTCTtataattttaagctacat-aataga--aacaatgtccaatcaaggcaggtaagtatcccattaacctgctgaatatttctcagtgcagaaccactacgtctatgtat i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21633246 314 + 198332218 ATTAAAA------------ACAACCTTTAATTGTACGGTGTGTCATATCTCCTAAGTT----TAACATGTGATCCCAATGGGTCATTACTATCTTCAATGCACAGTAGATG--------TTATTAG-TTTATTGTTTTGTAGAGAAGGGAACTAGACAACATGTTTCAACCAG-----TGTATCAGTAAGGCTATGCTTATAGACAAAACTGATCCTCTCTCTC-TCTTAAAATTAGGTCTCATaattttaaactacat-aataga--aacaatgtccaatcaaggcaggtaagtatcccactaatctgctgaatatttctcagtgcagaaccactatgtctatgtat i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20245153 318 - 85365473 ATTAAAA------------ATAACCTTTAATTGTATGGTGTGTCATATCTCCTAAGTTTAACTAACATGTAATCCCAATGGGTCATTACTATCTTCAATGCACAGTAGATG--------TTATTAG-TTTATTGTTTTGTAGAGAAGGGAACTAGACAACATGTTTGGACCAG-----TGTATCGGTAAGGCTATGCTTATAGACAAAACTGATCCTCTCTCTC-TCTTAAAATTAGGTCTtataattttaagctacat-aataga--aacaatgtccaatcaaggcaggtaagtatcccactaatctgctgaatatttctcagtgcagaaccactatgtctgtgtat i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16712063 318 + 184069350 ATTAAAA------------ATAACCTTTAATTGTATGGTGTGTCATATCTCCTAAGTTTAACTAACATATGATCCCAAGGGATTATTACTATCTTCAATGCACAGTGGATG--------TTATTAG-TTTATTGTTTTGTAGAGAAGGGAACTAGACAACATGTTTGGACCAG-----TGCATCAGTAAGGCTATGCTTATAGACAAAACTGGTCCTCACTCTC-TCTTAAAATTAGGTCTtataattttaagctacat-aataga--aacaatggccaatcgaggcaggtaagtatcccactaacccgctgaatatttctcagtgcagaaccactatgtctatgtat i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20753259 318 + 189454096 ATTAAAA------------ATAACCTTTAATTGTATGGTGTGTCATATCTCCTAAGTTTAACTAACATATGATCCCAAGGGATTATTACTATCTTCAATGCACAGTGGATG--------TTATTAG-TTTATTGTTTTGTAGAGAAGGGAACTAGACAACATGTTTGGACCAG-----TGCATCAGTAAGGCTATGCTTATTGACAAAACTGGTCCTCACTCTC-TCTTAAAATTAGGTCTtataattttaagctacat-aataga--aacaatggccaatcgaggcaggtaagtatcccactaacccgctgaatatttctcagtgcagaaccactatgtctatgtat i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16349215 318 + 178775436 attaaaa------------ataaccttTAATTGTATGGTGTGTCATATCTCCTAAGTTTAACTAACATATAATCCCAAGGGATTATTACTATCTTCAATGCACAGTGGATG--------TTATTag-tttattgttttgtagagaagggaaCTAGACAACATGTGTGGACCAG-----TGCATCAGTAAGGCTATGCTTATAGACAAAACTGGTCCTCACTCTC-TCTTAAAATTAGGTCTTATAATTTTAAGCTACAT-AATAGA--AACAATGGCCAATCGAGGCAGGTAAGTATCCCACTAACCCGCTGAATATTTCTCAGTGCAGAACCACTATGTCTATGTAT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19835475 326 - 48547382 ATTAAAA------------ATAACCTTTAATTGTATGATGTGTCATATCTCCTAAGTTTAACTAACATATAATCCCAAGGGATTATTACTATCTTCAATGCACAGTGGATGTTATTAGTTTATTAG-TTTATTGTTTTGTAGAGAAGGGAACTAGACAACATGTTTGGACCAG-----TGCATCAGTAAGGCTATGCTTATAGACAAAACTGGTCCTCACTCTC-TCTTAAAATTAGGTCTtataattttaagctacat-aataga--aacaatggccaatcgaggcaggtaagtatcccactaacccactgaatatttctcagtgcagaaccactatgtctatgtat i chlSab2.chr27 C 0 C 0 s mm10.chr5 49171743 281 + 151834684 AGAAAAATCACATTTTTTTATGACTTTAAATTATTTGTTCTGCCCCATCTTTCAAGTTCAACCAATGTCCACTCTTAAAATGATACTGATATCTCCACTGCAATCTAGATG--------TTCTAAC-TTTACTATTTT----------GAACTAGAATG---GTTTGTACCAATTTTCTATATTTGTGAGG-----------GACAGA-------------CCC-CTTTAGGACCAGATGCTA-----CTAAATTATCT-AAAAGGATAACA-----CAATC--------TAAGTATCCCTGT-ATGAAAGGAATACTGATCATATAAGGACAGCCATGGCCACAGAG i mm10.chr5 C 0 C 0 s canFam3.chr3 3773358 303 - 91889043 CTTTAAA------------ATAACCTTAAATTACAGGGTCTGTCATATTTTTCAAGTTCCACTAATAGGCTGTCCCAGTAGGTTATTGCTGTCTTTGACGCACATTAGATG--------TCATTAATTTTTTTGTTTTGTAGAGAAGAGAACTATAGAG---GTTTGGACCTT-----TGCATCAGGAAGGCTATCCT----AAGAAAATTGACCCCCATCCTCATCTCAAAATCAGGTCATAACATTTTAAGCCACATAAATAGC--AACAGTATCCAGT-----------ATGATCCCACTATCCCACTGAATATTGTCCATCTCAGAACTACTCTGGCCATGTAC i canFam3.chr3 C 0 C 0 e calJac3.chr3 21188229 0 - 190850796 C a score=39075.000000 s hg38.chr4_KI270790v1_alt 69660 16 + 220246 taatacttagaaatgg s panTro4.chr4 21458285 16 + 193495092 taatacttagaaatgg i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21633560 16 + 198332218 caatacttagaaatgg i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20245471 16 - 85365473 taatacttagaaacgg i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16712381 16 + 184069350 taatacttagaaatgg i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20753577 16 + 189454096 taatacttagaaatgg i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16349533 16 + 178775436 TAATACTTAGAAATGG i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19835801 16 - 48547382 taatacttagaaatgg i chlSab2.chr27 C 0 C 0 s mm10.chr5 49172024 10 + 151834684 AGAC------AAATGG i mm10.chr5 C 0 C 0 e calJac3.chr3 21188229 0 - 190850796 C e canFam3.chr3 3773661 0 - 91889043 C a score=2541968.000000 s hg38.chr4_KI270790v1_alt 69676 851 + 220246 ----------gtaaaacacacaagaacactataccttgtcaagaggaggagactaattcaggtatttagatgtttgaaaaatgtcttatataaagaaaagct--aaaaaaaa---ttgacaatatttaacaaagaaaaaggaaggaaatatgggacaaatagtgcctgc---------atttattgaaggattactcagagaatctaaaatcatttgagctaccctaataggtgtcatgaaaaacaaggaggaacgttataggaatgaacattttacttctgtattaggaa-aaccttctgacagtatg--aggtcaaaaaagaaaatggcctATTCACAACAATTTTATTTTTA-CCTGTGTAAAG--AAAAATTGTGAAATATTTTGaaatagaccaaaagaaaacacaa---aaacaaaacaaaacaaaacaaa-------------------------------------------------------aGCCACTGGCTAT--CCTGTGTGATGcagccttttgggtatctcaagcttt-tattgtct--ttgagatattttgtaactacgtaaattaaaaaaactg-aaaataatgcaa-atcacttttgtctattgaagtgcaaatttgtggtgtctaaattatgattgccctataactccttttggatgtacgtgtaaattctttttagcattctagatttgcctagaatgtgtggttctttgagagtcactttgaatcaattataatatcttactggtgacttcagtaattctggagttaaataaaatttttgagatgtgcatttgttctatatttgtatgagagtc-----ttgattttaccttt-----aaaaacctttatcttttaataCTtgcaagtgtgcaattaaagcaagttattttaacatctatcagaaacattctgaaagagattcctgaatttgtag s panTro4.chr4 21458301 847 + 193495092 ----------gtaaaacacacaagaacactatagcttgtcaagaggaggagactaattcaggtatttagatgtttgaaaaatgtcttatataaagaaaagct--aaaaaaa----ttgacaatatttaacaaagaaaaaggaaggaaatatgggacaaatagtgcctgc---------atttattgaaggattactcagagaatctaaaatcatttgagctaccctaataggtgtcatgaaaaacaaggaggaacgttataggaatgaacattttacttctgtattaggaa-aaccttctgccagtatg--gggtcaaaaaagaaaatggcctATTCACAACAATTTTATTTTTA-CCTGTGTAAAG--AAAAATTGTGAAATATTTTGAAATAGACCAAAAGAAAACACAa---aaacaaaacaaaacaaaacaaa-------------------------------------------------------aGCCACTGGCTAT--CCTGTGTGATGcagccttttgggtatctcaagcttt-t---gtct--ttgagatattttgtaactacgtaaattaaaaaaactg-aaaataatgcaa-atcacttttgtctattgaagtgcaaatttgtggtgtctaaattatgattgccctataactccttttggatgtacatgtaaattcttcttagcattctagatttgcctagaatgtgtggttctttgagagtcactttgaatcaattataatatcttactggtgacttcagtaattctggagttaaataaaatttttgagatgtgcatttgttctacatttgtatgagagtc-----ttgattttaccttt-----aaaaacctttatcttttaataCTtgcaagtgtgcaattaaagcaagttattttaacatctatcagaaacattctgaaagagattcctgaatttgtag i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21633576 849 + 198332218 ----------ataaaacacacaagaacactatagcttgtcaagaggaggagattaattcaggtattcagatgtttgaaaaatgtcttatataaagaaaagct--aaaaaaa-----tgacaatatttaacaaagaaaaaggaaggacaaatgggataaatagtgcctgc---------atttattgaaggattactcagagaatctaaaatcatttgagttaccctaataggtgtcatgaaaaacaaggaggaacgttataggaatgaacattttacttctgtattaggaa-aaccttctgccagtatg--aagtcaaaaaggaaaatggcctATTCCCAACAATTTTATTTTTA-CCTGTGTAAAG--AAAAATTGTGAAATATTTTGAAATAGACCAAAAGAAAACACAa---aaacaaaacaaaacaaaacaaa-------------------------------------------------------aACCACGGGCTAT--CCTGTCTGATGcagccttttgggtatctcaagcttt-tattgtct--ttgagatattttgtaactacgtaaattataaaagctg-aaaataatgcaa-atcacttttgtctattgaagtgcaaatttgtagtgtctaaatgattattgccctataactccttttggatgtacttgtaaattctttttagcattctagatttgcctataatgtgtagttctttgagagtcactttgaatcaattataatatcttactggtgccttcagtaattctggagttaaataaaatttttgagacgtgcgtttgttctatatttgtatgacagtc-----ttgattttaccttt-----aaaaacctttatcttttaataCTTACAAATGTGCAattaaagcaagttattttaacatctatcagaaacattctgaaagagattcctgaatttgtag i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20245487 850 - 85365473 ----------gtaaaacacacaagaacactacagcttgtcaagaggaggaaactaattcaggtatttagatgtttgaaaaatgtcttatataaagaaaagct--aaaaaaaa---ttgacaatgtttaacaaagaaaaaggaaggacaaatgggacagatagtgcctgc---------atttattgaagaattactcaaagaatctaaaatcatttgagctaccctaataggtgtcatgaaaaacaaagaggaacattacaggaatgaacattttacttctgtattaggaa-aaccttctgccagtatg--aggtcaaaaaagaaaagggcCTATTCACAGCAATTTTATTTTTA-CCTGTGTAAAG--AAAAATTGTGAAATATTTTGaaatagaccaaaagaaaacaca--------aacacaaaacaaaacaaa-------------------------------------------------------aACCACTGGCTAT--CCTGTCTGATGcagccttttgggtatctcaagcttt-tattgtct--ttgagatattttgtaactacgtaaattgcaaaaacag-aaaataatgcaa-atcacttttgtctattgaagtgcaaatttgtggtgtctaaatgattattgccctataactccttttggatgtacttgaaaattctttttagcattctagatttgcctataatgtgtggttctttgagagtcactttgaatcaattataatatctta-tggtgccttcagtaattttggagttaaataaaatttttgagatgtgcatttgttctacatttgtatgagagtcttttttttattttaccttt-----aaaaacctttatcttttaataCctgcaagtgtgcaattaaagcaaattattttaacatctattagaaacattctgaaagagattcctgaatttgtag i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16712397 843 + 184069350 ----------gtaaaacacacaagaacactagagcttgtcaagaggaggacactaattcagatatttagatgtttgaaaaatgtcttatataaagaaaagct--aaaaaaaa---tggacaagatttaacaaagcaaaaggaagcacaaatgggacaaacagtgcctgc---------atttattgaaggattactcagagaatctaaaatcatttgagctaccccaataggtgtcatgaaaaacaaggaggaacgttataggaatgaacattttaattctgtattaggaa-aagcttttgccagtata--aggtcaaaaaagaaaatggcctATTCACAAAAATTTTATTTTTA-CCTCTCTAAAG--AAAAATTGTGAAATATTTTGAAATAGACcaaaagaaaacg----------aaaacaaaacaaaacaaa-------------------------------------------------------aACCACTGGCTAT--CCGGTCCAATGCAGCCTTTTAGGGATCTCAAGcttt-tatgatct--ttgagatattttgtaactatgtaaattgtaaaaactg-aaaataatgcga-atcgtttttatccattgaagtacaaatttgtggtgtct-aatgattattgctctataactccttttggatgtccttgtaaattatttttagcattctagatttgtttgtaatgtgtggttctttgagtgtcactttgaaccaattataatatcttactggtgccctcagtaattctggagttaaataaaatttttgaaatgtgcgtttgttctatatttgtatgagagtc-----ttgattttaccttt-----aaaaacctttatcttttaataCTTGCAAGTGTGCAATGAAAGCAAATTATTTTAAcatctatcagaaacattctgaaagaggttcctgaatttgtag i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20753593 843 + 189454096 ----------ataaaacacacaagaacactagagcttctcaagaggaggacactaattcagatatttagatgtttgaaaaatgtcttatataaagaaaagct--aaaaaaaa---tggacaagatttagcaaagcaaaaggaagcacaaatgggacaaatagtgcctgc---------atttattgaaggattactcagagaatctaaaatcatttgagctaccccaataggtgtcatgaaaaacaaggaggaacgttataggaatgaacattttacttctgtattaggaa-aagcttttgccagtata--aggtcaaaaaagaaaatggcctATTCACAAAAATTTTATTTTTA-CCTCTGTAAAG--AAAAATTGTGAAATATTTTGaaatagaccaaaagaaaacg----------aaaacaaaacaaaacaaa-------------------------------------------------------aACCACTGGCTAT--CCTGTCCGATGCAGCCTTTTAGGGATCTCAAGcttt-tatgatct--ttgagatattttgtaactatgtaaattgtaaaaactg-aaaataatgcaa-atcgtttttatccattgaagtgcaaatttgtggtgtct-aatgattattgctctataactccttttggatgtccttgtaaattatttttagcattctagatttgtttgtaatgtgtggttctttaagtgtcactttgaaccaattataatatcttactggtgccctcagtaattctggagttaaataaaatttttgagatgtgcgtttgttctatatttgtatgagagtc-----ttgattttaccttt-----aaaaacctttatcttttaataCTTGCAAGTGTGCAATGAAAGCAAATTATTTTAAcatctatcagaagcattctgaaagaggttcctgaatttgtag i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16349549 846 + 178775436 ----------GTAAAACACACAAGAACACTAGAGCTTGTCAAGAGGAGGACACTAATTCAGATATTTAGATGTTTGAAAAATGTCTTAtataaagaaaagctaaaaaaaaaa---tggacaagatttaacaaagaaaaaggaagcacaAATGGGACAAATAGTGCCTGC---------ATTTATTGAAGGATTACTCAGAGAATCTAAAATCATTTGAGCTACCCCAATAGgtgtcatgaaaaacaaggagGAACGTTATAGGAATGAACATTTTACTTCTGTATTAGGAA-AAGCTTTTGCCAGTATA--aggtcaaaaaagaaaatggcctattcacaaaaattttattttta-cctctgtaaag--aaaaattgtgaaatattttgaaatagaccaaaagaaaatg----------aaaacaaaacaaaacaaa-------------------------------------------------------aaccactggCTAT--CCTGTCCGATGCAGCCTTTTAGGGATCTCAAGCTTT-TATGGTCT--TTGAGATATTTTGTAACTATGTAAAttgtaaaaactg-aaaataatgcaA-ATCGTTTTTATCCATTGAAGTGCAAATTTGTGGTGTCTAAATGATTATTGCTCTATAACTCCTTTTGGATGtccttgtaaattatttttagcatTCTAGATTTGTTTATAATGTGTGGTTCTTTGAGTGTCACTTTGAACCAATTATAATATCTTACTGGTGCCCTCAGTAATTCtggagttaaataaaatttttgagatGTGCGTTTGTTCTATATTTGTATGAGAGTC-----Ttgattttaccttt-----aaaaacctTTATCTTTTAATACTTGCAAGTGTGCAAtgaaagcaaattattttaacATCTATCAGAAACATTCTGAAAGAGGTTCCTGAATTTGTAG i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19835817 845 - 48547382 ----------gtaaaacacacaagaacactagagcttgtcaagaggaggacactaattcagatatttagatgtttgaaaaatgtcttatataaagaaaagct-aaaaaaaaa---tggacaagatttaacaaagaaaaaggaagcacaaatgggacaaatagtgcctgc---------atttattgaaggattactcagagaatctaaaatcatttgagctaccccaataggtgtcacgaaaaacaaggaggaacgttataggaatgaacattttacttctgtattaggaa-aagcttttgccagtata--aggtcaaaaaagaaaatggcctATTCACAAAAATTTTATTTTTA-CCTCTGTAAAG--AAAAATTGTGAAATATTTTGaaatagaccaaaagaaaacg----------aaaacaaaacaaaacaaa-------------------------------------------------------aACCACTGGCTAT--CCTGTCCGATGCAGCCTTTTAGGGATCTCAAActtt-tatggtct--ttgagatattttgtaactatgtaaattgtaaaaactg-aaaataatgcaa-atcgtttttatccattgaagtgcaaatttgtggtgtctaaatgattattgctctataacttcttttggatgtccttgtaaattatttttagcattctagatttgtttataatgtgtggttctttgagtgtcacattgaaccaattataatatcttactggtgccttcagtaattctggagctaaataaaatttttgagatgtgcgtttgttctatatttgtatgagagtc-----ttgattttacctct-----aaaaacctttatcttttaataCTTGCAAGTGTGCAATGAAAGCAAATTATTTTAAcatctatcagaaacattctgaaagaggttcctgaatttgtag i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21188229 835 - 190850796 ----------GTAAAAAACACAAGAACattagagcttgtcaagagaagaagactaattcagatatttagatgtttggaaaatgtctagtataaagaagagct--taaaaaaa---tc-acaagatttaacaaagaaaaaggaaggacaaatgagacaaacagtacctgctattgaaggatttattgaagaattactcagagaatcaaaaatcttttgagctaccctaataggtgtcatgaaaaaccaggagtaatgttacaggaaagaaaattgtacttcaggattagaaataaccttatgccagtttg--aggtcaataaagaaaatggCCCATTCACAAAAAATTTATTTTTA-CCTGTGTAAAGAAAAAAATTGTGAAATATTTTGAAAGAGACCCAAAGAAGAAAC---------AATACAAAACAAAACAAA-------------------------------------------------------AACCACTCCCTAT--CCTGTCTGATGcacccttttgggtatctcaagcttt-tcttgtct--ttgagataatttctaactacataaattgtaaaaactg-aaaataatgcaa-atcacttttgtccattgatgtgcaaatttgttgtgcctaaatgattattgccccgtaactccttttgcatgtacttgcaaattctttttagcattctagatttgcctataacgtgtggttctttgagtgtcactttgaactgattataacatgttactggt------------------gttaaataaaatctttgagatgtgtactcattctgtatttgtatgagaggc-----ttcattttaccttt------aatacttttatcttttaataTTTGCAAGGATGCAATTAAAACCAACTATTTTAAcatctatcagaaacattctgaaaga--ttcctgaatttgcat i calJac3.chr3 C 0 C 0 s mm10.chr5 49172034 886 + 151834684 GGTCAAGCTAGAGAAGTATCGAAAATAGCCAGAGCTTACTTA---------------TCAGAT------GTGTTTGTCAAGTGTCTCATATAAAGAGCAGGT--AAAATAAGGTCTTGACGTGGCTCAACAAAAGAAACAGCAGG-CACTTGCAATAAATAACTCCTGA---------ATTTACCTAAGAGATTTTTAGAGGATCAATTAT-ATTTTAGCTACCCTCCAAGATATTCTAACAAATGAAGGTGGGTTATATAAAAGAGAAAATTTTAATTCTACATTAGGAA-AAATTCATACTAATAGACTATTTCTAACTATAAAGTAATCTCATCACAG---TCATATTTTAAGGAAGTGGGGAG--AGAGTCTATGATCTGGTTGTAAAGTGAATAAATAAATAAGTCAATGAAAAAATGTATGAAGAAACAGACATGAAAGGCCTTGATATAGACATCTCCTTTACATTTACAGTGAACCCTCAAGTGAATTACTGGCTATGGAGCGTCTATAGTACGCTTTTAAGTATTTCAAACTTTCTGTGATTTTATTGAG-------TTAACCTTATGAATTTCATAACAGGTAAAATTATGCAATTTTATTCTTTTCCATCACAATGCAAATTAGCTGTGTCCAATTGGTTGCTGCCCTGGGATTCCttctgcatatactgataaattgtt-ttagcatttcagatttac---------atagcttttagcatggtcccttgatctcaccttagtatcctattgactccctcaataataatagagtt-aataaaatatttgagatgtat-tttacttcatatttctgtaaaagcc-----ttgattttacatttctgttaaacac------cctctaataTATGAAAGTGGGAAGTTAAAACTACCCAGTGTGCCCCTGAACAAGAATATTCTAGAAGAGATACATGGATTCTCAG i mm10.chr5 C 0 I 735 e canFam3.chr3 3773661 0 - 91889043 C a score=394317.000000 s hg38.chr4_KI270790v1_alt 70527 126 + 220246 cagactgcactaaaatattctcaaaggcaccttttaactctgaTAATGTCCAATATATGAAGAAAAGGAATTAACAGAAAGAATAAATTGTTCTAATTGAATGACTTGGCGAAGGGAGGCACCATT s panTro4.chr4 21459148 126 + 193495092 cagactgcactaaaatattctcaaaggcaccttttaactctgaTAATGTCCAATATATGAAGAAAAGGAATTAACAGAAAGAATAAATTGTTCTAATTGAGTGACTTGGCGAAGGGAGGCACCATT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21634425 126 + 198332218 cagactggactaaaatattctcaaaggcaccttttaactctgaTAATGTCCAATATATGAAGAAAAGGAATTAACACAAAGAATAAATTGTTCTAATTGAGTGACTTGGCGAAGGGAGGCACCATT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20246337 126 - 85365473 cagactggactaaaatattctcaaaggcaccttttaactctgaTAATGTCCAATATATGAAGAAAAGGAATTAACAGAAAGAATAAATTGTTCTAATTGAGTGACTTGGCGAATGAAGGCACCATT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16713240 126 + 184069350 cagactggactaaaatattctcaaagacaccttttaactctgaTAATGTCCAATATATGAAGAAAAGGAATTAACAGAAAGAATAAATTGTTCTAATTGAGTGACTTGGCGAATGGAGGCACCATT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20754436 126 + 189454096 cagactggactaaaatattctcaaagacaccttttaactctgaTAATGTCCAATATATGAAGAAAAGGAATTAACAGAAAGAATAAATTGTTCTAATTGAGTGACTTGGCGAATGGAGGCACCATT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16350395 126 + 178775436 CAGACTGGACTAAAATATTCTCAAAGACACCTTTTAACTCTGATAATGTCCaatatatgaagaaaaggaattaacagaaagaataaattgtTCTAATTGAGTGACTCGGCGAATGGAGGCACCATT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19836662 126 - 48547382 cagactggactaaaatattctcaaagacaccttttaactctgaTAACGTCCAATATATGAAGAAAAGGAATTAAGAGAAAGAATAAACTGTTCTAATTGAGTGACTTGGCGAATGGAGGCACCATT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21189064 126 - 190850796 caaactggactaaaatgttctcaaaggtacctttaaactcCAATAATGTCCAATATAGAAAGAAGAGAAATTAACAGAAAGAATAAATTGTTCTAATTGAGTGACTTGGCTAATGGAGGTACCATT i calJac3.chr3 C 0 C 0 e mm10.chr5 49172920 735 + 151834684 I e canFam3.chr3 3773661 0 - 91889043 C a score=616615.000000 s hg38.chr4_KI270790v1_alt 70653 196 + 220246 GAAAGC---CACAA-ATACAG--TTCTACGGTGCTGCATTGGAAGTTGTCTGTAAGTGAATTCAGACTTACTGAGACCAAAGTG--ATAGAGGGATAGTCATGGGAAAATATACAGGAGTAACAGAATTCAGGCTGAATTCTGGATGACAAAAT-----CAGGGATCTGACTTAGAAGTCATTGAC--AGAGAGAAGCATTGAAATTATCA s panTro4.chr4 21459274 196 + 193495092 GAAAAC---CACAA-ATACAG--TTCTACGGTGCTGCATTGGAAGTTGTCTGTAAGTGAATTCAGACTTACTGAGACCAAAGTG--ATAGAGGGATAGTCATGGGAAAATATACAGGAGTAACAGAATTCAGGCTGAATTCTGGATGACAAAAT-----CAGGGATCTGACTTAGAAGTCATTGAC--AGAGAGAAGCATTGAAATTATCA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21634551 198 + 198332218 GAAAGC---CACAA-ATACAG--TCCTATGGTGCTGCACTGGAAGTTGTCTGTAAGTGAATTCAGACTTACTGAGACCAAAGTGATATAGAGGGATAGTCATGGGAAAATATACAGGAGTAACAGAATTCGGGCTGAATTCTGGATGACAAAAT-----TAGGGATCTGACTTAGAAGCCATTGAC--AGAGAGAAGCATTGAAATTATCA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20246463 201 - 85365473 GAAAGCCAGCACAA-ATACAG--TCCTATGGTGCTGCATTGGAAGTTGTCTGTAAGTGAATTCAGGCTTACTGAGACCAAAGTG--ATAGAGGGATAGTCATGGGAAAATATACAGGAGTAACAGAATTCAGGCTGAATTCTGAATGACAAAAT-----TAGGGATCTGACTTAGAAGTCATTGACATAGAGAGAAGCATTGAAATTATCA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16713366 201 + 184069350 GAAAGCCAGCACAA-ATAGAG--TCCTATGGTGCCACATTGAGAGTTGTCTGTGAGTGAATTCAGACTTACTGAGACCAAAGTA--ATAGAGGGATAGTCATGGGAAAACATACAGGAGTAACAGAATTCAGGCTGAATTCTGGATGACAAAAT-----TAGGGATCTGACCTAGAAGTCATTGACATGGAGAGAAGCATTGAAATTATCA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20754562 201 + 189454096 GAAAGCCAGCACAA-ATAGAG--TCCTATGGTGCCACATTGAGAGTTGTCTGTGAGTGAATTCAGACTTACTGAGACCAAAGTA--ATAGAGGGATAGTCATGGGAAAACATACAGGAGTAACAGAATTCAGGCTGAATTCTGGATGACAAAAT-----TAGGGATCTGACCTAGAAGTCATTGACATGGAGAGAAGCATTGAAATTATCA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16350521 201 + 178775436 GAAAGCCAGCACAA-ATAGAG--TCCTATGGTGCCACATTGAAAGTTGTCTGTGAGTGAATTCAGACTTACTGAGACCAAAGTA--ATAGAGGGATAGTCATGGGAAAACATACAGGAGTAACAGAATTCAGGCTGAATTCTGGATGACAAAAT-----TAGGGATCTGACCTAGAAGTCATTGACATGGAGAGAAGCATTGAAATTATCA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19836788 201 - 48547382 GAAAGCCAGCATAA-ATAGAG--TCCTATGGTGCCACATTGGAAGTTGTCTGTGAGTGAATTCAGACTTACTGAGACCAAAGTA--ATAGAGGGATAGTCATGGGAAAACATACAGGAGTAACAGAATTCAGGCTGAATTCTGGATGACAAAAT-----TAGGGATCTGACCTAGAAGTCATTGACATGGAGAGAAGCACTGAAATTATCA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21189190 200 - 190850796 GTAAGCCAGCAAAACAGGAAG--TCCTATGGTGCTGCACTGGAAGTTGCCTATAAGTGAATTCATACTTACTGAGACTGAAGTG--ATAGCGGGATAGTCATGGGGAAATATACAAGAGTAACAGAGTTCAGGCTGAATTCTGGATGACAAAAT-----TAGGGATCTGACTTAGAAGTTATTGACACAGAGAGAAGCACTGACACTAT-- i calJac3.chr3 C 0 C 0 s mm10.chr5 49173655 176 + 151834684 GAAAGCCAGCACAA-GTAGAGCATCCTGTGGTGCT-TGTTAAAA---GAACGTAAGTGAACTTGGAACGAGTGAATTTAAGATA--ATAGAGGGACAGTTTCAGGAA---------------------------TAAATTTTTGATAAAAATATAGGAGTAGGGATTTGATTTTGAAGTTATTTA-ACTAAGAGAATCATGGCAACTGCCA i mm10.chr5 I 735 I 597 e canFam3.chr3 3773661 0 - 91889043 C a score=133394.000000 s hg38.chr4_KI270790v1_alt 70849 45 + 220246 CTATGACAATTATGCCAAGAAAAAGGAAGGGAAAAATCGGCAAAG s panTro4.chr4 21459470 45 + 193495092 CTATGACAATTATGCCAAGAAAAAGGAAGGGAAAAATCGGCAAAG i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21634749 45 + 198332218 CTATGACAATTATGCCAAGAAAAAGGAAGGGAAAAATCGGCAAAG i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20246664 45 - 85365473 CTATGACAATTATGCCAAGAAAAAGGAAGGGAAAAATCGGCAAAG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16713567 45 + 184069350 CTATGACAATTATGCCAAGAAAAAGGAAGGGAAACATTGACAAAG i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20754763 45 + 189454096 CTATGACAATTATGCCAAGAAAAAGGAAGGGAAACATTGACAAAG i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16350722 45 + 178775436 CTATGACAATTATgccaagaaaaaggaagggaaacatTGACAAAG i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19836989 45 - 48547382 CTATGACAATTATGCCAAGAAAAAGGAAGGGAAACATTGACAAAG i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21189390 45 - 190850796 CTGTGAGGATCACACCAAGAAAACTGAAGGGAAAAATTGGCAAAG i calJac3.chr3 C 0 C 0 e mm10.chr5 49173831 597 + 151834684 I e canFam3.chr3 3773661 0 - 91889043 C a score=450191.000000 s hg38.chr4_KI270790v1_alt 70894 149 + 220246 AGATAACATCTGTTTTTTT-GTGAAATCCTCAGAATGTGGCTATTGTTGGAGAAGAGAAGAGTATTTATTCTTTGACACAA---GTTTCCATCTTGGTAACTATGGATCATGGATGTCTCATTTTTT-TCTCTGTAA-CAATGCAAGAGAACAAA s panTro4.chr4 21459515 150 + 193495092 AGATAACATCTGTTTTTTTTGTGAAATCCTCAGAATGTGGCTATTGTTGGAGAACAGAAGAGTATTTATTCTTTGACACAA---GTTTCCATCTTGGTAACTATGGATCATGGATGTCTCATTTTTT-TCTCTGTAA-CAATGCAAGAGAACAAA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21634794 151 + 198332218 AGATAACATCTGTTATTT--GTGAAATCCTCAGAATGTGGCTATTGTTGGAGAAGAGAAGAGCATTTATTATTTGACACAACTTGTTTCCATCTTGGTAACTATGGATCATGGATGTCTCATTTTTT-TCTCTGTAA-CAATGCAAGAGGACAAA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20246709 148 - 85365473 AGATAACATCTGTTATTT--GTGAAATCCTCAGAATGTGGCTATTGTTGGAGAAGAGAAGAGCATTTATTCTTTGACACAA---GTTTCCATCTTGGTAACTATGGATCATGAATGTCTCATTTTTT-TCTCTGTAA-CAATGCAAGAGAACAAA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16713612 148 + 184069350 AGATAACATCTGTTATTC--GTGAAATCCTCAGAATGTGACTATTGTCGGAGAAGAGAAGAGCATTTGTTCTTTGACACAA---GTTTCCATCTTGGTAACTATGGATTGTAGACATCTCATTTTTT-TCTCTATAA-CAATGCAAGAGAATAAA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20754808 148 + 189454096 AGATAACATCTGTTATTC--GTGAAATCCTCAGAATGTGACTATTGTCGGAGAAGAGAAGAGCATTTGTTCTTTGACACAA---GTTTCCATCTTGGTAATTATGGATTGTGGACATCTCATTTTTT-TCTCTATAA-CAATGCAAGAGAATAAA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16350767 148 + 178775436 AGATAACATCTGTTATTC--GTGAaatcctcagaatgtgactattgTCGGAGAAGAGAAGAGCATTTGTTCTTTGACACAA---GTTTCCATCTTGGTAACTATGGATTGTGgacatctcatttttt-tctctataa-caATGCAAGAGAGTAAG i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19837034 149 - 48547382 CGATAACATCTGTTATTC--GTGAAATCCTCAGAATGTGACTATCGTCGGAGAAGAGAAGAGCATTTGTTCTTTGACACAA---GTTTCCATCTTGGTAACTATGGATCATGGACATCTCATTTTTTCTCTCTATAA-CAACGCAAGAGAATAAA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21189435 148 - 190850796 AGATAACATCTGTTATTT--GTGAAATACTTAGAATGCGGCTATTGTTGGAGAAGAGAAAAGCATTTGCTCTTTGACACAA---GTTTCCATCTTGATAACTATGGATCACGGAAATCTTCATTTTT-TCCATGTAG-CAATGTAAGAGGACAAA i calJac3.chr3 C 0 C 0 s mm10.chr5 49174428 143 + 151834684 AAATAGCACCCG-CATTC--ATGGAA-CCTTAAAACAAGGCTATTGTCAGAGTAGAGAAAATAATATAATCTCTATGATGT---GTTTCC----TTACAAAAATGACTCAAGGACATCTTTTCAATT-CAATTAAAGTCAATTCAAGAGAAAAAA i mm10.chr5 I 597 I 1129 e canFam3.chr3 3773661 0 - 91889043 C a score=87391.000000 s hg38.chr4_KI270790v1_alt 71043 29 + 220246 CAACATATATAAGATATCTCGTTTGGTTA s panTro4.chr4 21459665 29 + 193495092 AAACATATATAAGATATCTCGTTTGGTTA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21634945 29 + 198332218 AGACATATATAAGATATCTCATTTGGTTA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20246857 29 - 85365473 AAACATATATAAGATATCTCGTTTGGTTA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16713760 29 + 184069350 AAACATATATAAGACATCTCGTTTGGTTA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20754956 29 + 189454096 AAACATATATAAGACATCTCGTTTGGTTA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16350915 29 + 178775436 AAACATATATAAGACATCTCGTTTGGTTA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19837183 29 - 48547382 AAACATATATAAGATATCTCGTTTGGTTA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21189583 29 - 190850796 AAACACATGTAAGATATCTTGTTTAGTTA i calJac3.chr3 C 0 C 0 e mm10.chr5 49174571 1129 + 151834684 I e canFam3.chr3 3773661 0 - 91889043 C a score=1499556.000000 s hg38.chr4_KI270790v1_alt 71072 452 + 220246 TTTTAAGTATTCCATCATAGAAAGTATTGACTTACCTTTTAATTTCTCATTTTATTCTCACAAGTTTTCT---TAGACAAAACAGAAATTA----------TCATTGATTGGTTGGAGTTTTAAAAGACCTGGATAATTTTGTTAAGGTTGATCATCACTATTATGCACAAATAATTTAAACA-------------GGTACTTTGGCTTCTTGAGAATGGAGCTCTCAGTAATTTTGTTCATAGTTGTTTGTATTCCAAGAACTCCTGAATCCAAC--CCCATGATTGAATTCAACATCATTGTAAGGCACGTGCTTATAAGAAAGCTGCATATTT--AATCTTCTATTTCTTTGAAAGAGGTGAAAGCATA------------------------------ATTCTAGCAAGACAAATATGCAGGCCTAATTGACAATTTTTATTTCTATATAGAGATTCAACAAGAGCTAAGGTGTCATAGAGGAAAGTCACTGAAA----GAGCTGACTAGCA s panTro4.chr4 21459694 450 + 193495092 TTTTAAGTATTCCATCATAGAAAGTATTGACTTACCTTTTAATTTCTCATTTTATTCTCACAAGTTTTCT---TAGACAAAACAGAAATTA----------TCATTGATTGGTTGGAGTTTTAAAAGACCTGGATAATTTTGTTAAGGTTGATCATCACTATTACGCACAAATAATTTAAACA-------------GGTACTTTGGCTTCTTGAGAATGGAGCTCTCAGTAATTTTGTTCATAGTTGTTTGTATTCCAAGAACTCCTGAATCCAAC--CCCATGATTGAATTCAACATCACTGTAAGGCACGTGCTTATAAGAAAGCTGCATATTCTCAATCTTCTACTTCTTTGAAAGAGGTGAAAGTATA------------------------------ATTCTAGCAAGACAAATATGCAGGCCTAATTGATAATTTTTATTTCTATATAGAGATTCAACAAGAGCTAAGGTGTCATAGAGGAAAGTCACTGAAA----GAGCTAAC----A i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21634974 451 + 198332218 TTTTAAGTATTCTATCATAGAAAGTACTGACTTACCTTTTGATTTCTCATTTTATTCTCACAAGTTTTCT---TAGACAAAATGGAAATTA----------TGATTGATTGGTTGGAGTTTTAAAAGACCTGGATAATTTTGTTAAGGTTGATCATCACTATTATGCACAAATAATTTAAACA-------------GGTACTTTGGCTTCTTGAGAATGGAGCTCTCAATAATTTTGTTCATAGTTGTTTGTATTCCAAGAACTTCTGAATCCAAC--CCCATGATTGAATTCAACATCATTGTAAGGCATGTGCTTATAAGAAAGCTGCATATTC--AATCTTCTACTTCTTTGAAAGAGGTGAAAGTATA------------------------------ATTCTAGCAAGACAAATATGCAGGCCTAATTGATAATTTTTATTTCTGTATAGAGATTCAACAAGAGCTAAGGTGTCATA-AGGAAAGTCACTGAAA----GAGCTGACTAACA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20246886 456 - 85365473 TTTTAAGTATTCTATCATAGAAAGTATTGACTTACCTTTTAATTTCTCATTTTATTCTCACAAGTTTTCT---TAGACAAAACGGAAATTA----------TGATTGATTGGTTGGAGTTTTAAAAGACCTGGATAATTTTGTTAAGGTTGATCATCACTATTATGCACAAATAATTTAAACA-------------GGTACTTTGGCTTCTTGAGAATGGAGCTCTCAATAATTTTGTTCATAATTGTTTGTATTCCATGAACTCCTGAATCCAAC--CCCATGATTGAATTCGACATCATTGTAAGGCATGTGCTTATAAGAAAGCTGCATATTC--AATCTTCTACTTCTTTGAAAGAGGTGAAAGTATA------------------------------ATTCTAACAAGACAAATATGCAGGCCTAATTGATAATTTTTATTTCTGTATAGAAATTCAACAAGAGCTAAGGTGTCATAGAGGAAAGTCACTGAAATAGCTAGCTGACTAACA i nomLeu3.chr20 C 0 I 320 s rheMac3.chr5 16713789 448 + 184069350 TTTTAAGTATTCTATCATAGAAAGTATTGACTTACCTTTTAATTCATCATTTTATTCTCACACATTTTCT---TAGACAAAATGAAAATTA----------TGATTGATTGGTTGGAGTTTTAAAAGACCTGGATAATTTTGCTAAGGTTGATCATAACTATTTTGCACAAAGAATTTAAACA-------------GGTACTTTGTCTTCTTGAGAACGGAGCTCTCAATAATTTTGTTCATAGTTGTTTGCATTCTAAGAACTCCTGAATCCAAC--CCCATGATTGAATTCAACCTCATTGTAGGCCATATGCTTATAAGAAAGCTGCATATTC--AATCTTCCACTTCTTTGAAAGAGGTGAAAGTATA------------------------------ATTCTAGCAAGACAAATATGCAGGCCTAATTGATAATTTTTATTTCTGTATAGAGATTCAACAAGAGCTAAGGTGTCATACAGGAAAGTCACTGAAA----GAG----CTAACA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20754985 448 + 189454096 TTTTAAGTATTCTATCATAGAAAGTATTGACTTACCTTTTAATTCATCATTTTATTCTCACACATTTTCT---TAGACAAAACGAAAATTA----------TGATTGATTGGTTGGAGTTTTAAAAGACCTGGATAATTTTGCTAAGGTTGATCATCACTATTTTGCACAAAGAATTTAAACA-------------GGTACTTTGTCTTCTTGAGAACGGAGCTCTCAATAATTTTGTTCATAGTTGTTTGCATTCTAAGAACTCCTGAATCCAAC--CCCATGATTGAATTCAACCTCATTGTAGGCCATATGCTTATAAGAAAGCTGCATATTC--AATCTTCCACTTCTTTGAAAGAGGTGAAAGTATA------------------------------ATTCTAGCAAGACAAATATGCAGGCCTAATTGATAATTTTTATTTCTGTATAGAGATTCAACAAGAGCTAAGGTGTCATACAGGAAAGTCACTGAAA----GAG----CTAACA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16350944 452 + 178775436 TTTTAAGTATTCTATCATAGAAAGTATTGACTTACCTTTTAATTCATCATTTTATTCTCACACATTTTCT---TAGACAAAACGAAAATTA----------TGATTGATTGGTTGGAGTTTTAAAAGACCTGGATAATTTTGCTAAGGTTGATCATCACTATTTTGCACAAAGAATTTAAGCA-------------GGTACTTTGTCTTCTTGAGAACGGAGCTCTCAATAATTTTGTTCATAGTTGTTTGCATTCTAAGAACTCCTGAATCCAAC--CCCATGATTGAATTCAACCTCATTGTAGGCCATATGCTTATAAGAAAGCTGCATATTC--AATCTTCCACTTCTTTGAAAGAGGTGAAAGTATA------------------------------ATTCTAGCAAGACAAATAAGCAGGCCtaattgataatttttatttctgtatagaGATTCAACAAGAGCTAAGGTGTCATACAGGAAAGTCACTGAAA----GAGCTGACTAACA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19837212 452 - 48547382 TTTTAAGTATTCTATCATAGAAAGTATTGACTTACCTTTTAATTCATCATTTTATTCTCACACATTTTCT---TAGACAAAATGAAAATTA----------TGATTGATTGGTTGGAGTTTTAAAAGACCTGGATAATTTTGCTAAGGTTGATCATCACTATTTTGCACAAAGAATTTAAACA-------------GGTACTTTGTCTTCTTGAGAAAGGAGCTCTCAATAATTTTGTTCATAGTTGTTTGTATTCTAAGAACTCCTGAATCCAAC--CCCATGATTGAATTCAACCTCATTGTAGGCCGTGTGCTTATAAGAAAGGTGCATATTC--AATCTTCCACTTCTTTGAAAGAGGTGAAAGTATA------------------------------ATTCTAGCAAGACAAATATGCAGGCCTAACTGATAATTTTTATTTCTGTATAGAGATTCAACAAGAGCTAAGGTGTCATACAGGAAAGTCACTGAAA----GAGCTGACTAACA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21189612 452 - 190850796 TTTTAAGTATTCTGTCTTAGAAAGTATTGACTTACTTTTTAATTTTTCATTTTACTCTCACAAGTTTTCT---TAGAAAAAAGGGAAATTA----------TGATTGAATGGTTGGAGTTCTAAAAGACCTATATAATTTTGTTAGAGTTGATCATCACTATAATTCATAAATAATTTAAACA-------------GGTAGTTTGGCTTCTTGAGAATGGAGTTCTCAATAATTGTGTTCATAGTTGTTTGTATTCCAAGAACTCCTGAATCCAAC--TCTATGACTGAATTCAACATCATTGTAAGGCATGTGCTCATAACAAAGCTACATATTC--AATCTTCTACTTCTTTGAAAGAGGTGAAAGTATA------------------------------ATTCTAGCAAAACAAATATGCAGGCCTAATTGATAATTTTTATTTCTATATAGAGATTCAACAAGAGCTAAGGTGTCGTAGTGGAAAGTCACTGAAA----GAGCTGACTGACA i calJac3.chr3 C 0 C 0 s canFam3.chr3 3773661 494 - 91889043 TTACAAGCATTCTGCTATAAAACACATTGATTTGTCTTTTAATCTCTCCTGTTATACTCACTGGTTCTCCGGAGACACAAGATAGAGAAtgattgattgactgattgattgattgGAGTTTTCAAAAGCCCACCTAGCTTTGTTAGCGTTGATAATCATTGTTAGACaaaaaaaaaaaaaaaaaaaaaagaaTTTTGGTATTTTGGCTTCTTTTGAAGAGAGCTCTCAATAATTCTGTTCAAGGTCGTTTATATTCTAGGAATTCCTGAATCCAACCACTCATCCCTGAATTCACCCTCGTTATAAGGTACATGCTTATGACAAAGCTGCATTTCC--CATCTTTTATCGCATTGAAAAAGAGAGAATTCTATTCTTCTAGCATTCTATTCTAATTCTAATTCTTCTAGCAAAGCAAACATGCAGGCCTAATTAATAATCCTCACTTCTATTTAGGGGATTAGCAAGA---------------AAGAAATTAAC-GGGA----GATACGGCTAATG i canFam3.chr3 C 0 C 0 e mm10.chr5 49174571 1129 + 151834684 I a score=2063865.000000 s hg38.chr4_KI270790v1_alt 71524 654 + 220246 CATAAAATATTTT-------TTTT-GGTGTTTGAAGCGAGAAAGGAAGAAACAACAATCTATGATTAGAGTGCCCCTTAGTTTCATTTCAAAGAGCATGAGGCTCTCATGGCTGTATGAGGCCTCCACTAAAATAAGATGAATGGGAAGGAAAAACTTATGAGTTTATTGAAATTGCAATATTACAATTTGCCAAGAGTTCTGATCTATGATGTCCAGTGGTTTTCCAACTCCT-T-GGACTCCCTCTAAAATGCTGCATTGCATATATTCATTCTGCAATTTAAATAAt------gtgtgtgtgtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtTTCTTAACAGAGTGAAAAAAAAAAGTCCTGCTACTCCATAGATACCAGGGCAAGGAGCAGAGTGTTTGTGTACACACATTGGACTGTAAAAATCAAGAATAAAATTCTTAACTTGTGCTGCCACTTCTGGGCTGAATGCCCATTGCTGGTTAACTTTACCCTAAAATTGCAGGAATTAAAAATGTGATCCGTTTATTATCTCTGAAAGAGCAAAGACAGAGTGGGAACCTCCGAGTGGTTTTGTGGTCAGAGTGCTCTGCTCTTCTGCTGACAGCCTGTCAGTGCCCTGTTCCTTTCTCATCCTTAATTAGAATTCTCGGATTCTGAG s panTro4.chr4 21460144 642 + 193495092 CATAAAATATTTT-------TTTTTGGTGTTTGAAGCGAGAAAGGAAGAAACAACAATCTATGATTAGAGTGCCCCTTAGTTTCATTTCAAAGAGCATGAGGCTCTCATGGCTGTATGGGGCCTCCACTAACACGAGATGAATGGGAAGGAAAAACTTGTGAGTTTATTGAAATTGCAATATTACAATT-GCCAAGAGTTCTGATCTATGATGTCCAATGGTTTTCCAACTCCT-T-GGACTCCCTCTAAAATGCTGCATTGCATATATTCATTCTGCAATTTAAATAAt------gtgtgtgtgtgtgtgt------------gtgtgtgtgtgtgtgtgtTTCTTAACAGAGTGAAAAAAAAAAGTCCTGCTACTCCATAGATACCAGGGCAAGGAGCAGAGTGTTTGTGTACACACATTGGACTGTAAAAATCAAGAATAAAATTCTTAACTTATGCTGCCACTTCTGGGCTGAATGCCCATTGCTGGTTAACTTTACCCTAAAATTGCAGGAATTAAAAATGTGATCCGTTTATTATCTCTGAAAGAGCAAAGACAGAGTGGGAACCTCCGAGTGGTTTTGTGGTCGGAGTGCTCTGCTCTTCTGCTGACAGCCTGTCAGTGCCCTGTTCCTTTCTCATCCTTAATTAGAATTCTCGGATTCTGAG i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21635425 651 + 198332218 CATAAAATGATTT-------TTTT-GGTGTTTGAAGAGAGAAAGGAAGAAAAAACAATCTATGATTAGAGTGCCCCTTAGTTTCATTTCAAAGAGCATGAGGCTCTCATGGCTGCATGAGGCCTCCACTAAAACGAGATGAATGGGAAGGAAAAACTTATGAGTTTATTGAAATTGTAATATTACAATTTGCCAAGAGTTCTGATCTATGATGTCCAACAGTTTTCCAACTCCT-TGGGACTCCCTCTAAAATGCTGCATTGCATATATTCATTCTGCAATTTAAATAAC------gtgtgtgtgtgtgtgt----gtgtgtgtgtgtgtgtgtgtgtgtgtTTCTTAACAGAGTGAAAAAAAAAAGTCCTGCTATTCCATAGACACCAGGGCAAGGAGCAGAGTGTTTGTGTACACACATTGGACTGTAAAAATCAAGAATAAAATTCTTAACTTATGCTGCCACTTCTGGGCTGAATGCCCATTGCTGGTTTACTTTACCCTAAAATTGCAGGAATTAAAAATGTGATCCGTTTATTATCTCTGAAAGAGCAAAGACAGAGTGGGAGCCTCCGAGTGGTTTTGTGGTCGGAGTGCTCTGCTCTTCTGCTGACAGCCTGTCAGTGCCCTGTTCCTTTCTCATCCTTAATTAGAATTCTCGGATTCTGAG i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20247662 642 - 85365473 cATAAAATAATTT-------TTTT-GGTGTTTGAAGTG----AGGAAGAAACAACAATCTATGATTGGAGTGCCCCTTAGTTTCATTTCAAAGAGCATGAGGCTCTCATGGCTGCATGGGGCCTCCACTA--ATAAGATGAATGGGAAGGAAAAACTTACGAGTTTATTGAAATTGCAATATTACAATTTGCCAAGAATTCTGATCTATGATGCCCAACGGTTTTCCAACTCCT-T-GGACTCCCTCTAAAATGCTGCATTGCATATATTCATTCTGCAATTTAAATAAC------gtgtgtgtgtgtgtgt------gtgtgtgtgcgtgtgtgtgtgtgtTTCTTAACAGAGTGAAAAGAAAATGTCCTGCTACTCCATAGATACCAGGGCAAGGAGCAGAGTGTTTGTGTACACACATTGGACTGTAAAAATCAAGAATAAAATTCTTAACTTATGCTGCCACTTCTGGGCTGAATGCCCATTGCTGGTTAACTTTACCCTAAAAATGCAGGAATTAAAAATGTGATCCGTTTATTATCTCTGAAAGAGCAAAGACAGGGTGGGAGCCTCCGAGTGGTTTTGTGGTCGGAGTGCTCTGCTCTTCTGCTGACAGCCTGTCAGTGCCCTGTTCCTTTCTCATCCTTAATTAGAATTCTCGGATTCTGAG i nomLeu3.chr20 I 320 C 0 s rheMac3.chr5 16714237 624 + 184069350 CATGAAAGAATTT-------TTTT-GGTGTTTGAAGCGAGAAAGGAAGAAACAACAATCTATGATTAGAGTGCCCCTTAGTTTCATTTCAAAGAGCATGAGGCTCTCAT----------GGCATCCACTAAAACGAGATGAATGGGAAGGAAAAACTTAGGAGTTTATTGAAATTGCCATATTACAGTCTGCCAAAAGTTCTGATCTATGATGTCCAATGGTTTTCCAACTCCT-T-GGACTCCCTCTAAAATGCTGCATTGCATATATTCATTCTGCAATTTAAATAACgtgtgtgtgtgtgtgtgtgtgt----------gtgtgtgtgtgtgtgtgtgt----------------AAAAAAATGTCCTGCTACTCCATAGATACTAGGGCAAGGAGCAGAGTATTTGTGTACACACATTGGACTATAAAAATCAAGAATAAAATTCTTAACTTATGCTGCCACTTCTGGGCTGAATGCCCATTGCTGGTTAACTTTACCCTAAAATTGCAAGAATTAAAAATGTGATCCGTTTATTATCTCTGAAAGAGCAAAGACAGAGTGGGAGCCTCCGAGTGGTTTTGTGGTCGGAGTGCTCTGCTCTTCTGCTGACAGCCTGTCAGTGTCCTGTTCCTTTCTCATCCTTAATTAGAATTCTCGGATTCCGAG i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20755433 618 + 189454096 CATGAAAGAATTT-------TTTT-GGTGTTTGAAGCGAGAAAGGAAGAAACAACAATCTATGATTAGAGTGCCCCTTAGTTTCATTTCAAAGAGCATGAGGCTCTCAT----------GGCATCCACTAAAACGAGATGAATGGGAAGGAAAAACTTAGGAGTTTATTGAAATTGCCATATTACAGTCTGCCAAGAGTTCTGATCTATGATGTCCAATGGTTTTCCAACTCCT-T-GGACTCCCTCTAAAATGCTGCATTGCATATATTCATTCTGCAATTTAAATAAC------gtgtgtgtgtgtgtgt----------gtgtgtgtgtgtgtgtgtgt----------------AAAAAAATGTCCTGCTACTCCATAGATACTAGGGCAAGGAGCAGAGTATTTGTGTACACACATTGGACTATAAAAATCAAGAATAAAATTCTTAACTTATGCTGCCACTTCTGGGCTGAATGCCCATTGCTGGTTAACTTTACCCTAAAATTGCAAGAATTAAAAATGTGATCCGTTTATTATCTCTGAAAGAGCAAAGACAGAGTGGGAGCCTCCGAGTGGTTTTGTGGTCGGAGTGCTCTGCTCTTCTGCTGACAGCCTGTCAGTGTCCTGTTCCTTTCTCATCCTTAATTAGAATTCTCGGATTCCGAG i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16351396 618 + 178775436 CATGAAAGAAttt-------tttt-GGTGTTTGAAgcgagaaaggaagaaacaacaaTCTATGATTAGAGTGCCCCTTAGTTTCATTTCAAAGAGCATGAGGCTCTCAT----------GGCATCCACTAAAACGAGATGAATGGGAAGGAAAAACTTAGGAGTTTATTGAAATTGCCATATTACAGTCTGCCAAGAGTTCTGATCTATGATGTCCAATGGTTTTCCAACTCCT-T-GGACTCCCTCTAAAATGCTGCATTGCATATATTCATTCTGCAATTTaaataac------gtgtgtgtgtgtgtgt----------gtgtgtgtgtgtgtgtgtgt----------------aaaaaaatGTCCTGCTACTCCATAGATACTAGGGCAAGGAGCAGAGTATTTGTGTACACACATTGGACtataaaaatcaagaataaaattcTTAACTTATGCTGCCTCTTCTGGGCTGAATGCCCATTGCTGGTTAACTTTACCCTAAAATTGCAAGAATTAAAAATGTGATCCGTTTATTATCTCTGAAAGAGCAAAGACAGAGTGGGAGCCTCCGAGTGGTTTTGTGGTCGGAGTGCTCTGCTCTTCTGCTGACAGCCTGTCAGTGTCCCGTTCCTTTCTCATCCTTAATTAGAATTCTCGGATTCCGAG i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19837664 616 - 48547382 CATGAAAGAATTT-------TTTT-GGTGTTTGAAGCGAGAAAGGAAGAAACAACAATCTATGATTAGAGTGCCCCTTAGTTTCATTTCAAAGAGCATGAGGCTCTCAT----------GGCATCCACTAAAACGAGATGAATGGGAAGGAAAAACTTATGAGTTTATTGAAATTGCCATATTACGGTCTGCCAAGAGTTCTGATCTATGATGTCCAATGGTTTTCCAACTCCT-T-GAACTCCCTCTAAAATGCTGCATTGCATATATTCATTCTGCAATTTAAATA--------Atgtgtgtgtgtgtgt----------gtgtgtgtgtgtgtgtgtAT----------------AAAAAAAAGTCCTGCCACTCCATAGATACTAGGGCAAGGAGCAGAGTATTTGTGTACACACATTGGACTGTAAAAATCAAGAATAAAATTCTTAACTTATGCTGCCACTTCTGGGCTGAATGCCCATTGCTGGTTAACTTTACCCTAAAATTGCAAGAATTAAAAATGTGATCCGTTTATTATCTCTGAAAGAGCAAAGACAGAGTGGGAGCCTCCGAGTGGTTTTGTGGTCGGAGTGCTCTGCTCTTCTGCTGACAGCCTGTCAGTGTCCTGTTCCTTTCTCATCCTTAATTAGAATTCTTGGATTCCGAG i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21190064 629 - 190850796 CATAAA-----CA-------TTTT-GGTGTTTGAAGTGGGAAAGGAAGAAACAACAATCTATGCTTAACGTGCCCCTTAGTTTCACTTCAAAGAGCATGGGGCCCTCATGGCTGCATGAAGCATCCACTAAAATGAGATGAATGGGAAGGAAAAACTTATGAGTTTATTGAAATTGCCATATTACAATCTGCCAAGAGTTCTAATCTATGATATCTAATCATTTTCCAACTCCTCT-GGACTCCCTCTAAAATGCTGCACTGCATATATTCATCCTGCAATTTAAATtgt------gtgtgtgtgtatgtgt----------gtgtgtgtgtgtgtCTTTGG--------AGAGTTA-AAAAAAATGTCCTACTACTCCACAGATACTAGGGCAAGAAGCAGAATATTTGTGTGCACACATTGAAATGT-AAAATCAAGAATGAAATTCTTGCCTTATGCTACCACTTCTGGGCTGAATGCCCA-TGCTGGTTAACTTTGCCCTAACAGTGCAGGAATTAAAAATGTGATCTGTTTATTGTCTCTGAAAGAACAAAGATAGAGTGGGAGCCTCCGGGTGGTTTTGTGGTCGGAGTGCTCTGCTCTTCTGCTGACAGCCTGTCAGTGCCCTGTTCCTTTCCCATCCTTAATTAGAATTCTCAGATTCTGAG i calJac3.chr3 C 0 C 0 s canFam3.chr3 3774155 594 - 91889043 CCTAAGAGGAATATGAGGAGTTTT-GCTGTTTGGGATGGACAAGGAAGAAACAGCAATTCACAATCAGGAAACCATTTAGTTTATCTTCAAAGA----GACAACCTCCTGGTTACATGAGATAGCAACTGAAATAAGGTGAATACAAAGGAAAATTACACGAGTTTATTGATAATACCATTTTACAACCTTTCAAGCATTCTGAGCAGTAATCACCAATCACTCTCCAAATCCT-TCTTACCTCCTCTAAAATGTTGCATTGCA-----TCACCTTGCCATTTAAATAAC------TTTTCCTCTTTTTAGA----------AAGTGAGGG------------------------AAAACAAAACAGCCCTGCTACTCCTCAGGTAGTGGGCCAAGGAATGGAATCTAT---------------------AAAATCCAGAATGGAATCTTTAACGTATGTGGCCTCTCCTGGGCTAAATGTGCATG--TGGTTATCTCTACCCTAAAACTGCAGGAATTAAAAAGATAATGCATCTATTATCTATCAAAAGGCAAAGATAGAGTGGGAGCCTCCCGG-GGTTTTGTGGTCTGGGCACTGGGCTCATGTGCTGACAACCTGTCGATGGCCTGTGTCTTTCCCGACCTTAATTAGAATTCCC-GATTCAGAA i canFam3.chr3 C 0 C 0 e mm10.chr5 49174571 1129 + 151834684 I a score=4376346.000000 s hg38.chr4_KI270790v1_alt 72178 1304 + 220246 GTTGCCGTCTGTACCACATTTGCCACTGTGGTCCCCGGACCTGGCACAAACACGGCTCACCTC-----GTCCTCATAAAATGACTCATTACCTTCTCCAGCTGTTATCTATTAGCACTGCAGATTTTGCAC-CAATTTCCA------TGCCAAG--------TCATCTCTCCCACCCTCCTTATT----------------------------GCCCCACAACC---------------------------------------------------------------------------------TACTGGAGC-----CAGCTGGTG----------------------------------------AGAATTCCCACACCTTG-----TTTAAGAGGACATTT---------TCTTGACACATCAAGACAGATGCATGCCCTTAAG-TGCACCTACACCAAGACCTGAAACAGGATAATTTGTCCAGT--TCTCAGTCACAGATATTTTGAAAAATCTAGTTCCATAGCAGCATTAATGCCATGTCAACATTTGAGACAAATA-----------GTG------------CAAGAATTGTCTGTTACTGAGTGAGCCA--------------TTACTCAGGCTGT---TCTCATC-----------TGAAGAATCTTTGCATTTAGTGTGTTCAAGCT-AAAACAGGAATCATTT-GTGTTCAAAATTACTTCTGAAC-ACCTACCAGCCAACATAATTTGCTTACTTAGTATACCTTGGGGCCTGCATGTATGTA---GGAAATG-GAGCTAGGAAATGAGACTTGTGAACAAGCTGAAAGGG---AAAAAAAACAGGTTACCTTGAAAGATACAATACCAAATTTCTTGTAATTTAAAATAACTCCTCAACAGCAACAATGT----AAAGAAAGACAGTTGC-TGTGTTCTGT---GAAGGAAGCTGTGCTCTCAGATTTATATGTTCCAACTCATGGCATC--CTGAGTTACACCATATGTTAGGATATTATTATAG-AGTTTAGAGATATAGAAATAAACAATTCAATATTTTTGAAATGAGCTATTGGCCAAAAGTACAAAATCTTTTAATGAACAAC-AACAAAAGCAACCAACGACAAATAAGG--------------------GAGAATAGCATAATAGTTATGACCAAAGGTTTTGGGCTGG------AAAAATACATCTGCTTAATTTCATAACACTTTTGAGCAATTCTTAACTTTTatgagaa---caataataata------tgcagggctggtgggtagatgatataagatgtaaaattctcagggca------atacttggctctatagtaagtctttggtaaatAGAAACCAGCATTAGAAATTATAATGGGGAGGAGGGATGAAGGT---A-GGAGGGAAGAGAG----AGTAAAACATAGTCAATA-ATCAATCAATC------------AGAACAGAGCAAAATATGGTTGAATGGCTTAATTTGATCTCAGGAAG-AAAAATGCTGCTCAGAGATAAAGATAATT--TAA-A--AATTACATGCAAC----AAAAAATTGATGGAAGCGTCTACAT-GAAAATTTAAAACTTCTGCACAT s panTro4.chr4 21460786 1304 + 193495092 GTTGCCGTCTGTACCACATTTGCCACTGTGGTCCCCGGACCTGGCACAAACACGGCTCACCTC-----ATCCTCATAAAATGACTCATTACCTTCCCCAGCTGTTATCTATTAGCACTGCAGATTTTGCAC-CAATTTCCA------TGCCAAG--------TCATCTCTCCCACCCTCCTTATT----------------------------GCCCCACAACC---------------------------------------------------------------------------------TACTGGAGC-----CAGCTGGTG----------------------------------------AGAATTCCCACACCTTG-----TTTAAGAGGACATTT---------TCTTGACACATCAAGACAGATGCATGCCCTTAAG-TGCACCTATGCCAAGACCTGAAACAGGATAATTTGTCCAGT--TCTCAGTCACAGAGATTTTGAAAAATCTAGTTCCATAGCAGCATTAATGCCATGTCAACATTTGAGACAAATA-----------GTG------------CAAGAATTGTCTGTTACTGAGTGAGCCA--------------TTACTCAGGCTGT---TCTCATC-----------TGAAGAATCTTTGCGTTTAGTGTGTTCAAGCT-AAAACAGGAATCATTT-GTGTTCAAAATTACTTCTGAAC-ACCTACCAGCCAACATAATTTGCTTACTTAGTATACCTTGGGGCCTGCATGTATGTA---GGAAATG-GAGCTAGGAAATGAGACTTGTGAACAAGCTGAAAGGG---AAAAAAAACAGGTTACCTTGAAAGATACAATACCAAATTTCTTGTAATTTAAAATAACTCCTCAACAGCAACAATGT----AAAGAAAGACAGTTAC-TGTGTTCGGT---GAAGGAAGCTGTGCTCTCAGATTTATATGTTCCAACTCATGGCATC--CTGAGTTACACCATATGTTAGGATATTATTATAG-AGTTTAGAGATATAGAAATAAACAATTCAATATTTTTGAAATGAGCTATTGGCCAAAAGTACAAAATCTTTTAATGAACAAC-AACAAAAGCAACCAACGACAAATAAGG--------------------GAGAATAGCATAATAGTTATGACCAAAGGTTTTGGGCTGG------AAAAATACATCTGCTTAATTTCATAACACTTTTGAGCAATTCTTAACTTTTATGAGAA---CAATAATAATA------TGCAGGGCTGGTGGGTAGATGATATAAAATGTAAAATTCTCAGGGCA------ATACTTGGCTCTATAGTGAGTCTTTGGTAAATAGAAACTAGCATTAGAAATTATAATGGGGAGGAGGGATGAAGGT---A-GGAGGGAAAAGAG----AGTAAAACATAGTCAATA-ATCAATCAATC------------AGAATAGAGCAAAATATGGTTGAATGGCTTAATTTGATCTCAGGAAG-AAAAATGCTGCTCGGAGATAAAGATAATT--TAA-A--AATTAcatgagac----aaaaaattgatggaagtgtctacat-aaaaatttaaaacttctgcacat i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21636076 1313 + 198332218 GTTGCCGTCTGTACCACATTTGCCACTGTGGTCCCTGGACCTGGCACAAACACGGCTCACCTCGTCCTGTCCTCATAAAATGACTCATTACTTTCTCCAGCTGTTATCTATTAGCACTGCAGATTTTGCAC-CAATTTCCA------TGCCAAG--------TCATCTCTCCCACCCTCCCCATT----------------------------GCCCCACAACC---------------------------------------------------------------------------------TACTGGAGC-----CAGCTGGTG----------------------------------------AGAATTCCCACACCTTG-----TTTAAGAGGACATTT---------TCTTGACACATCAAGACAGATGCATGCCCTTAAG-TGCACATATGCCAAGACCTGAAACAGGATAATCTGTCCAGT--TCTCAGTCACACAGATTTTGAAAAATCTAGTTCCATAGCAGCATTAATGCCATGTCAACATTTGAGACAAATA-----------GTG------------CAAGAATTGTCTGTTACTGAGTGAGCCA--------------TTACTCAGGCTGT---TCTCATC-----------TGAAGAATCTTTGCGTTTAGTGTGTTCAAGCT-AAAATAGGAATCATTT-GTGTTCAAAATTACTTGTGAAC-ACCTACTAGCCAACATAATTTGCTTACTTAATATACCTTGGGGACTGCATGTATGTA---GGAAATG-GAGCTAGGAAATGAGACTTGTGAACAAGCTGAAAGGG--AAAAAAAAACAGGTTACCTTGAAAGATACAATACCAAATTTCTTGTAATTTAAAATAACTCCTCAACAGCAACAATGT----AAAGAAAGACAGTTAC-TGTGTTCTGT---GAACGAAGCTGCGCTCTCAGATTTCTATGTTCCAACTCATGGCATC--CTGACTTACACCATATGTTAGGATACTATGATAG-AGTTTAGAGATATAGAAATAAACAATTCAATATTTTTGAAATGAGCTATTGGCCAAAAGTACAAAATCTTTTAATGAACAAC-AACAAAAGCAACCAACAACAAATAAGG--------------------GAGAATAGCATAATAGTTATGACCAAAGGTTTTGGGCTGG------AAAAATACATCTGCTTAATTTCATCACACTTTTGAGCAATTCTTAACTTTTATGAGAA---CAATAATAATA------TGCAGGGCTGGTGGGTAGATGATATAAGATGTAAAATTCTCAGGGCA------ATACTTGGCTCTATAGTGAGTCTTTGGTAAATAGAAACCAGCATTAGAAATTATAATGGGGAGGAGGGATGAAGGTAGAA-GGAGGGAAAAGAG----AGTAAAACATAGTCAATC-ATCAATCAATC------------AGAACAGAGCAAAATATGGTTGAATGGCTTAACTTGATCTCAGGAAG-AAAAATGCTTCTCAGAGATAAAGATAATT--TAA-A--AATTATATGAGAC----aaaaaattgatggaagtgtctacat-aaaaatttaaaacttctgcacat i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20248304 1303 - 85365473 GTTGCCGTCTGTACCACATTTGCCACTGTGGTCCCCGGACCTGGCACAAACACAGCTCACCTC-----GTCCTCATAAAATGACTCATTACCTTCTCCAGCTGTTATCTATTAGCGCTGCAGATTTTGCAC-CAATTTCCA------TGCCAAG--------TCATCTCTCTCACCCTCCCCATT----------------------------GCCCCACACCC---------------------------------------------------------------------------------TACTGGAGC-----CAGCTGGTG----------------------------------------AGAATTCCCACACCTTG-----TTTAAGAGGACATTT---------TCTTGACACATCAAGACACATGCATGCTCTTAGG-TGCACCTATGCCAAGACCTGAAACAGGACAATTTGTCCAAT--TC----TCATAGAGATTTTGAAAAATCTAGTTCCATAGCAGCATTAATGCCATGTCAACATTTGAGACAAACA-----------GTG------------CAAGAATTGTCTGTTACTGAGTGAACCA--------------TTACTCAGGCTGT---TCTCATC-----------TGAAGAATCTTTGCCTTTAGTGTGTTCAAGCT-AAAATAGGAATCACTT-GTGTTCAAAATTACTTCTGAAC-ACCTACCAGCCAACATAATTTGCTTACTTAGTATACCTTGGGGCCTGCATGTATGTA---GGAAATG-AAACTAGGAAATGAGACTTGTGAACAAGCTGAAAGGG---GAAAAAAACAGGTTACCTTGAAAGATACAATACCAAATTTCTTGTAATTTAAAATAACTCCTCAACAGCAACAAGGT----AAAGAAAGACAGTTAT-TGTGTTCTGT---GAACGAAGCTGTGCTCTCAGATTTATATGTTCCAACTCATGGCATC--TTGAGTTACACCATATGTTAGGATATTATTATAG-AGTTTAGAGATATAGAAATAAATGATTCAATATTTTTGAAATGAGCTATTGGCCAAAAGTACAAAATCTTTTAATGAACAAC-AACAAAAGCAACCGACAACAAATAAGG--------------------GAGAATAGCATAATAGTTATGACCAAAGGTTTTGGGCTGG------AAAAATACATCTGCTTAATTTCATCACACTTTTGAGCAATTCTTAACTTTTATGAGAA---CAATAATAATA------TGCAGGGCTGGTAGGTAGATGATATAAGATGTAAAATTCTCAGGGCA------ATACTTGGCTTTATAGTGAGTCTTTGGTAAATAGAAACCAGCATTAGAAATTATAATGGGGAGGAGGGATAAAGGTAGAA-GGAGGGAAAAGAG----AGTAAAACATAGTCAATC-ATCAATCAATC------------AGAACAGAACAAAATATGGTTGAATGGCTTAATTTGATCTCAGGAAG-AAAAATGCTGCTCAGAGATAAAGATAATT--TAA-A--AATTATATGAGAC----AAAAAATTGATGGAAGTGTCTACAC-AAAAATTTAAAACTTCTGCACAT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16714861 1343 + 184069350 GTTGCCATCTGTACCACACTTGCCACTGTGGTCCCCGGACCTGGCACAAACACGGCTAACCTC-----GTCCTCATAAAATGACTCATTACCTTCTCCAGCTGTTATCTATTAGCACTGCAGATTTTGCAC-CAATTTCCA------TGCCAAG--------TCATCTCTCCCACCCTCCCCATC----------------------------GCCCCACAACC---------------------------------------------------------------------------------TACTGGAGC-----CAGCTGGTG----------------------------------------AGAATTCCCACACCTTA-----TTTAAGAGG-CATTT---------TCTTGACACATCAAGACAGATGCATGCCCTTAAG-TGCACCTATGCCAAGACCTGAAACAGGACAATTTGTCCAAT--TCTCAGTCATAGAGATTTTGAAAAATCTAGTTCCATAGCAGCATTAATGCCATGTCAACATTTGAGACAAATA-----------GTG------------CAAGAATTGTCTGTTACTGAGTCAGCCA--------------TTACTCAGGCTGT---TCTCAGC-----------TGAAAAATCTTTGTGTTTAGTGTGTTCAAGCT-AAAATAAGAATCATTT-GTGTTCAAAATTACTTCTCAAT-ACCTACCAGCCAACATAATTTGCTTACTTAGTATACCTTGGGGCCTGCATGTATGTA---GGAAATG-AAGCTAGGAAATGAGACTTGTGAACAAGCTGAAAGGGGAAAAAAAACACAGGTTACCTTGAATGATACAATACCAAATTCCTTGTAATCTAAACTAACTCCTCAACAGCAACAATGTAAAGAAAGAAAGACAGTTAC-TGTGTTCTGT---GAACAAAGCTGTGCTCTCAGATCTATGTGTTCCAACTCATGGCATC--CTGAGTTACACCATGTGTTAGGATATTATTATAG-AGTTTAGAGATGTAGAATTA----ATTCAATATTTTTGAAATGAGCTATTGGCCAAAAGTACAAAATCTTTTAATGAACAAC-AACAAAAGCAACCAATGACAAATGAGGTCTCCCTATATATAATAGCATAATATAGCATAATAGTCATGATCAAAGGTTTTGGCCTGG-AAAAAAAAAACACCTGTGCTTAATTTCATCACAGTTTTGAGCAATTCTTAACTTTTATGACAA---CAataataata------tgcagaattggtaggtagctgatataagatgtaaaattctcagggca------atgcttggctc-atagtgagtctttggtaaatagaaacCAGCATTAGAAATTATAATGGGGAGGAAGGATGAAGGTAGAA-GGAGGGAAAAGAG----AGTAAAACATaatcaatc-atcaatcaatcaattaatcaatcaGAACAGAACAAAATATGGTTGAAC-GCTTAATTTGATCTCAGGAAG-AAAAATGCTGCTCAGACAAAAAGCTAATT--TAA-A--AATTATAAGAGAC-----AAAAGTTTATGGAAGCATCTGCAT-AAAAATTTAAAACTTCTGCACAT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20756051 1342 + 189454096 GTTGCCATCTGTACCACACTTGCCACTGTGGTCCCCGGACCTGGCACAAACACGGCTAACCTC-----GTCCTCATAAAATGACTCATTACCTTCTCCAGCTGTTATCTATTAGCACTGCAGATTTTGCAC-CAATTTCCA------TGCCAAG--------TCATCTCTCCCACCCTCCCCATC----------------------------GCCCCACAACC---------------------------------------------------------------------------------TACTGGAGC-----CAGCTGGTG----------------------------------------AGAATTCCCACACCTTA-----TTTAAGAGG-CATTT---------TCTTGACACATCAAGACAGATGCATGCCCTTAAG-TGCACCTATGCCAAGACCTGAAACAGGACAATTTGTCCAAT--TCTCAGTCATAGAGATTTTGAAAAATCTAGTTCCATAGCAGCATTAATGCCATGTCAACATTTGAGACAAATA-----------GTG------------CAAGAATTGTCTGTTACTGAGTGAGCCA--------------TTACTCAGGCTGT---TCTCAGC-----------TGAAAAATCTTTGTGTTTAGTGTGTTCAAGCT-AAAATAAGAATCATTT-GTGTTCAAAATTACTTCTGAAT-ACCTACCAGCCAACATAATTTGCTTACTTAGTATACCTTGGGGCCTGCATGTATGTA---GGAAATG-AAGCTAGGAAATGAGACTTGTGAACAAGCTGAAAGGGGAAAAAAAACACAGGTTACCTTGAATGATACAATACCAAATTCCTTGTAATCTAAACTAACTCCTCAACAGCAACAATGTAAAGAAAGAAAGACAGTTAC-TGTGTTCTGT---GAACAAAGCTGTGCTCTCAGATCTATGTGTTCCAACTCATGGCATC--CTGAGTTACACCATGTGTTAGGATATTATTATAG-AGTTTAGAGATGTAGAATTA----ATTCAATATTTTTGAAATGAGCTATTGGCCAAAAGTACAAAATCTTTTAATGAACAAC-AACAAAAGCAACCAATGACAAATGAGGTCTCCCTATATATAATAGCATAATATAGCATAATAGTCGTGATCAAAGGTTTTGGCCTGG--AAAAAAAAACACCTGTGCTTAATTTCATCACAGTTTTGAGCAATTCTTAACTTTTATGACAA---CAataataata------tgcagaattggtaggtagctgatataagatgtaaaattctcagggca------atgcttggctc-atagtgagtctttggtaaatagaaacCAGCATTAGAAATTATAATGGGGAGGAAGGATGAAGGTAGAA-GGAGGGAAAAGAG----AGTAAAACATaatcaatc-atcaatcaatcaattaatcaatcaGAACAGAACAAAATATGGTTGAAC-GCTTAATTTGATCTCAGGAAG-AAAAATGCTGCTCAGACAAAAAGCTAATT--TAA-A--AATTATAAGAGAC-----AAAAGTTTATGGAAGCATCTGCAT-AAAAATTTAAAACTTCTGCACAT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16352014 1345 + 178775436 GTTGCCATCTGTACCACACTTGCCACTGTGGTCCCCGGACCTGGCACAAACACGGCTAACCTC-----GTCCTCATAAAATGACTCATTACCCTCTCCAGCTGTTATCTATTAGCACTGCAGATTTTGCAC-CAATTTCCA------TGCCAAG--------TCatctctcccaccctccccatc----------------------------GCCCCACAACC---------------------------------------------------------------------------------TACTGGAGC-----CAGCTGGTG----------------------------------------AGAATTCCCACACCTTA-----TTTaagaggatattt---------tcttgacACATCAGGACAGATGCATGCCCTTAAG-TGGACCTATGCCAAGACCTGAAACAGGACAATTTGTCCAAT--TCTCAGTCATAGAGATTTTGAAAAATCTAGTTCCATAGCAGCATTAATGCCATGCCAACATTTGAGACAAATA-----------GTG------------CAAGAATTGTCTGTTACTGAGTGAGCCA--------------TTACTCAGGCTGT---TCTCAGC-----------TGAAAAATCTCTGTGTTTAGTGTGTTCAAGCT-AAAATAAGAATCATTT-GTGTTCAAAATTACTTCTGAAT-ACCTACCAGCCAACATAATTTGCTTACTTAGTATACCTTGGGGCCTGCATGTATGTA---GGAAATG-AAGCTAGGAAATGAGACTTGTGAACAagctgaaaggggaaaaaaaacacaggTTACCATGAATGATACAATACCAAATTCCTTGTAATCTAAACTAACTCCTCAACAGCaacaatgtaaagaaagaaagacagttaC-TGTGTTCTGT---GAACAAAGCTGTGCTCTCAGATCTATGTGTTCCAACTCATGGCATC--CTGAGTTACACCATGTGTTAGGATATTATTATAG-AGTTTAGAGATGTAGaatta----attcaatatttttgaaatgagcTATTGGCCAAAAGTACAAAATCTTttaatgaacaac-aacaaaagcaaccaATGACAAATGAGGTCTCCCTATATATAATAGCATAATATAGCATAATAGTCGTGATCAAAGGTTTtgggctggaaaaaaaaaaacacctgtgcTTAATTTCATCACAGTTTTGAGCAATTCTTAACTTTTatgacaa---caataataata------tgcAGAATTGGTAGGTAGCTGATATAAGATGTAAAATTCTCAGGGCA------ATGCTTGGCTC-ATAGTGAGACTTTGGTAAATAGAAACCAGCATTAGAAATTATAATGGGGAGGAAGGATGAAGGtagaa-ggagggaaaagag----agtAAAACATaatcaatc-atcaatcaatcaattaatcaattaGAACAGAACAAAATATGGTTGAAC-GCTTAATTTGATCTCAGGAAG-AAAAATGCTGCTCagacaaaaagataatt--taa-a--aattataagagac-----AAAAGTTTATGGAAGCATctgcat-aaaaatttaaaacttctgcacaT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19838280 1324 - 48547382 GTTGCCATCTGTACCACACTTGCCACTGTGGTCCCTGGACCTGGCACAAACACGGCTAACCTC-----ATCCTCATAAAATGACTCATTACCTTCTCCAGCTGTTATCTATTAGCACTGCAGATTTTGCAC-CAATTTCCA------TGCCAAG--------TCATCTCTCCCACCCTCCCCATC----------------------------GCCCCACAACC---------------------------------------------------------------------------------TACTGGAGC-----CAGCTGGTG----------------------------------------AGAATTCCCACACCTTA-----TTTAAGAGGACATTT---------TCTTGACACATCAACACAGATGCATGCCCTTAAG-TGCACCTATGCCAAGACCTGAAACAGGACAATTTGTCCAAT--TCTCAGTCATAGAGATTTTGAAAAATCTAGTTCCATAGCAGCATTAATGCCATGTCAACATTTGAGACAAATA-----------GTG------------CAAGAATTGTCTGTTACTGAGTGAGCCA--------------TTACTCAGGCTGT---TCTCAGC-----------TGAAAAATCTTTGCGTTTAGTGTGTTCAAGCT-AAAATAAGAATCATTT-GTGTTCAAAATTACTTCTGAAT-ACATACCAGCCAACATAATTTGCTTACTTAGTATACCTTGGGGCCTGCATGTATGTA---GGAAATG-AAGCTAGGAAATGAGACTTGTGAACAAGCTGAAAGGGGGAAAAAAACACAGGTTACATTGAATGATACAATACCAAATTCCTTGTAATCTAAACTAACTCCTCAACAGCAACAATGTAAAGAAAGAAAGACAGTTAC-TGTGTTCTGT---GAACAAAGCTGTGCTCTCAGATCTATGTGTTCCAACTCATGGCATC--CTGTGTTACACCATGTGTTAGGATATTATTATAG-AGTTTAGAGATGTAGAATTA----ATTCAATATTTTTGAAATGAGCTATTGGCCAAAAGTACAAATTCTTTTAATGAACAAC-AACAAAAGCAACCAATGACAAATGAGG--------------------GAGAATAGCATAATAGTCGTGATCAAAGGTTTTGGGCTGG-AAACAAAAAACACCTGTGCTTAATTTCATCATAGTTTTGAGCAATTCTTAACTTTTATGACAA---CAataataata------tgcagaattgataggtagctgatataagatgtaaaattctcagggca------atgcttggctc-atagtgagtctttggtaaatagaaacCAGCATTAGAAATTATAATGGGGAGGAAGGATGAAGGTAGAA-GGAGGGAAAAGAG----AGTAAAACATaatcaatc-atcaatcaatcaattaatcaatcaGAACAGAACAAAATATGGTTGAAC-GCTTAATTTGATCTCAGGAAG-AAAAATGCTGCTCAGACAAAAAGATAATT--TAA-A--AATTATAAGAGAC-----AAAAGTTTATGGAAGCATCTGCAT-AAAAATTTAAAACTTCTGCACAT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21190693 1296 - 190850796 GTTGCCGTCTGTACCACACTTG-CACTATGGTCCCCGGACCTGGCACAAACATGGCTAACTTC-----ATCCTCATAAAATGACTCATTGCCTTCTCCAGCTGTTATCTATTAGCACTGCAGATTTTGCAC-CACTCTCCA------TGCCAAG--------TCATCTCTCCCACCCTCCCCATT----------------------------GCCCCACAACT---------------------------------------------------------------------------------TGCTGGAGC-----CAGCTGGTG----------------------------------------AGAATTCCCACACCTTG-----TTTAAGAGGACATTT---------TCTTGACACATCAAGACAGATGTATGGCCTTAAGTTGCACCTATGCCAAGACCTGAAACAAGACAATTTTTCCAAT--TCTTAGTCATAGAGATTTTGAAAAATCTAGTTTCATAGCAGCATTAATGCC-TGTCAACATTTGAGACAAATA-----------GTC------------CAAGAATTGTTTGATACTGAGAGAGCCA--------------TTACTCAGGCTAT---TCTCAGC-----------TGAAGAATCTTTGTGTTTCGTGTTCTGAAGGTAAAAATAGGGATCATTT-GTGTTCAAAATTACTTCTGAAA-ACCTACCAGCCAATATAATTTGCTTACTTAGCATACCTTGGGGCCTACATATATGTA---GGAAATG-AAGCTAGGAAATGAGACTTGTGAACATGCAGAAATGG-AAAAATAACACAGGTTTTGTTGAAAGTTACAATACCAAATTTCTTGTAATCTAAAATAACTCCTCAACAGCAGCAATGTGAAGAAAGAAAGATGGCTATATGTGTTCTGT---AAATGAAGCTGTGCTCTCTGATTTATGTGTACTACCTCATGGCATC--CTGAGTTACATCATCTGTTAGGATATTATTATAG-AGTTTAGAGATGCAGAAATAAA-----CAATA-TTTTGAAATGAGCTATTGGCCAAAAGTGCAAAATCTTTTAATCAACAACAAAAAAAAGCAACCAATGACA----AGG--------------------GAGACTAGCAAAATAATTGTGATCAAAGGTTTTGGGCTGG------AAAAAAACATCTGCTTAATTTTATCAcagttttcagtcattcttaactttcatgagaa---caaaaataata------tgcagggtttgtgggtagatgatataagatggaaaattctcagggca------atacttggctc-atagtgagtctttggtaaatagaaactAGCATTAGACATTATAATGGAGAGGAGGGATGAAGGT---C-AAAGGGAAAAGAG----AGTAAAACATA--------ATCAATCAATC------------AGAGCATAacaacatatgactgaat-gcctaatttgatctcaggaag-aaaaatgctgctcagacataaagataattaaaaa-a--aatcataagagat----aaaacattgatagaagtgtctgcataaaaaacttaaaatttctgcacat i calJac3.chr3 C 0 C 0 s mm10.chr5 49175700 1470 + 151834684 GTTGTCATTT---TCATACATTTCACCACTGCCTCTAGACCTGGTACAAACTTGACTTACTTT-----AGACTCATAAAAGGATTCACAGCTTTTTCCAAATTTTATGCAACTGAAATGAGGAAATTACATGCAAGTTCTGCTTTGCCTCCAAGATAATGCATTGTTATTCTCATTGTTCCTACTGAAATACATGATGGTCAACTGTTGTTGAGTTTCCCAACTATGCATTCTTTTAAattttatatttttaaaaattatgtccatgtctatgctttgagtgggttcctggaggtcaaaggaggatgctggagcctcagcagctggagttacaggcagtgaggagcagctgaagtgcatgctgggaacaaaactctggtcctctggaagatcagagggtacacttaacgcagccactttacaTATCAGGGCTAATCTCTGCACTTTAT-TGGAACTTTTTCACATTCTGATATAGAGAAATTTGTTCAATAATTTTACTTATAGAACTTTTGAAAAATCCAGTTCCTAGGCAATAACAGTGCT------GCCTTTGATGTATGTGCATTGAGGGATTTG------------GAAGAACTGTCTGTAACCAGGTGAACCAtgttgttgttgttgttgttgctgctgt---tgttgttgATCGTGATGATGATTGGCCATTATTTCTGGTGGTCCAAATAT-AAAATAATCAGCGTTTAGTGTGAAAAAAAAAAACTGAACTGCATATCACACACAAAAATTTGCAAGTTTAGTATATCGAGGGGGTAGGGGGGCTTTG---GGCATTGTTATCTGTGTACTCTG--TTGTGAAACAACTAAAAGGG---AAACAACACAAATCATTCT-AAAGCTCTAATAGGATATCTTCTATATTCTGCAGTAGTATCCCAA-AGGAAGAGCATGCAGAAAGAAA---AGCTTT-CCTATTTTGTCTATGACAAAGCTGTGCCCCATATTTTATGTATGCGACTATACAGAGTCCTCTGCGCTATATTGCATAGTGAGGTAATACTATAATAAGTTAAGAATGTCAAAATTAACAAGCAAATGTTTTTATATAGATCTATCAA-TAAGGCTGCACAATC--------AATGGC-AACAAGA------AATGACAAATTATG--------------------AAGGAAA---------------------------GACTGG--GGAGAGAAACACCTCT--TTCATTACCTGATAGCTTCGAGCAAGTC----ATTTTTTGAAAACTCCAACATTAACC------TTCAGGATTGGTGGTCAACT-ATATAAATTGCAAAATGGTCAGGTGAGGCTTGATACTTGA-TC-AGAGTGAGGCTGCAGCGAATGCTAAGCAGCATGTCCAATAA--------AGGAAGGATAAATGGGGAATGGAGAAGGCAAAG----AAAAAAGCATAAGGAAAT-AAAAA------------------AGAGTA-AATAAGGTGTGGGGGA---TGCTAATTTGAATTCAGTAAGAAAAAACAACCCTCAAGCCTAAAAGTGGCG--GAA-GACAAATAGAGAAGAA----TATTAACCAATTAAAACATCTG----AAAAATATTAAATTTCCATACAT i mm10.chr5 I 1129 C 0 s canFam3.chr3 3774749 1300 - 91889043 -TTGCTGCCTGCACTACTGTTGCCACCGTGGTCTCCAGAACTGGCACAAACATGGCTAACCCC-----TCGCTCATGAAATGATTCATTACGTTCCCCTGCTGTTACCTATTAGCGCTGTAGCTTTTGCAG-CCATCTCCA------GGCCAGG--------TCATATTTCCCACTGTCCCCAGG----------------------------GCCCCACCGCA---------------------------------------------------------------------------------CACTTGAGC-----CAGCTGGTG----------------------------------------CTTGTTTCCAAACCTTG-----CTTCAGAGGGCATTT---------TCTTGACACGTCAAGACAGACACATACCCTTAGG-GGCAGCTCTGCCAAGAGGCAAAACAGGGCAATTTGTCTAGTGATCCTAGTCACGGAGATTTTGAAAACTCTTGTTCCGTGGCAGCATTAAGGCTATGTCAACAGCAAGAACAACGA-----------GAAAAGGAAGAAAGCAAAGAATTGTC----ACAAGCTATGTCG--------------TTACTGAGGCTGTTTATCCTAGC-----------TGAAGAATCTTTGTTTCTA--------------GTAATAGGAAGCATTT-GTGTTCCAAATAGCTCTTAAAG-ATCTATCATTGAAC--AATCTGCTTACTTAGTAGACCTTGGGGTCTCCATGTGTGTGTTCGGCCCTG-ACCAGGGAAAATGAGGTTTGTGGATGAGCCGAAGGAG-----ACAACTCGAGTGAC-TTGAAAGATATGATACCAAGTTTCTAGCAATCTAAAGTAA---CTCAACAGGAACAATGT----GAACAAACAGAGTTGTATTTGTTCCGT---GAAGGAAGCTGTGTTCTATG-CTTATAGGCACTGCCTCACAGAATT--CTGGGCTACACCAC--GTTGGGAGGTTACAATACTATTTTAGAGATGTGGAAATA----ATTCAATTTTTTTTAAACAAACAATCAGTCAAGGTTGCAAGATAATTCAATGAACAAC-AACAAAAACA---AATAACAAACAAGA--------------------AAGGATAGCATAATAGTTATGAGCAAAGGCTTCGGT----------AGGAAAACATAGGAttaattacttcgtgaccttgagcaagatttaacctttgtgtaaa---caacaatagtatcaacctgcaagattgatgggtagactgtttaagatgcaaaatgctcagggca------atacttggcag-agag-gaagctctagtaaatggaagcCAGCATTAGAAACTGTAAGAGCGAGAATAGGAAAACGC---A-GGAGGAGAAAGGGAAACAGTAAAATtcaatcaatcaatcaatcaatc------------GGAACAGAACAGAATATGGGTGAAT-ATTTAATTTGATCTCAGGAAGGAAAAATGCTGCCTAAGCTTAAAATTAATG--GAAGA--AATTGAAGGAGATTTAAAGAAAATCAGCAAAAGTGCCCACAT-AAAAAATTAAAATTTCTGCACAT i canFam3.chr3 C 0 C 0 a score=546.000000 s hg38.chr4_KI270790v1_alt 73482 1 + 220246 A s chlSab2.chr27 19839604 1 - 48547382 A i chlSab2.chr27 C 0 C 0 s mm10.chr5 49177170 1 + 151834684 A i mm10.chr5 C 0 I 108 s canFam3.chr3 3776049 1 - 91889043 A i canFam3.chr3 C 0 C 0 e macFas5.chr5 20757393 0 + 189454096 C e rheMac3.chr5 16716204 0 + 184069350 C e calJac3.chr3 21191989 0 - 190850796 C e papAnu2.chr5 16353359 0 + 178775436 C e nomLeu3.chr20 20249607 0 - 85365473 C e ponAbe2.chr4 21637389 0 + 198332218 C e panTro4.chr4 21462090 0 + 193495092 C a score=691.000000 s hg38.chr4_KI270790v1_alt 73483 4 + 220246 AGAA s chlSab2.chr27 19839605 4 - 48547382 AGAA i chlSab2.chr27 C 0 C 0 s canFam3.chr3 3776050 4 - 91889043 TGAA i canFam3.chr3 C 0 I 5 e mm10.chr5 49177171 108 + 151834684 I e macFas5.chr5 20757393 0 + 189454096 C e rheMac3.chr5 16716204 0 + 184069350 C e calJac3.chr3 21191989 0 - 190850796 C e papAnu2.chr5 16353359 0 + 178775436 C e nomLeu3.chr20 20249607 0 - 85365473 C e ponAbe2.chr4 21637389 0 + 198332218 C e panTro4.chr4 21462090 0 + 193495092 C a score=373.000000 s hg38.chr4_KI270790v1_alt 73487 4 + 220246 CAAA s chlSab2.chr27 19839609 4 - 48547382 CAAA i chlSab2.chr27 C 0 I 1 e mm10.chr5 49177171 108 + 151834684 I e macFas5.chr5 20757393 0 + 189454096 C e rheMac3.chr5 16716204 0 + 184069350 C e calJac3.chr3 21191989 0 - 190850796 C e canFam3.chr3 3776054 5 - 91889043 I e papAnu2.chr5 16353359 0 + 178775436 C e nomLeu3.chr20 20249607 0 - 85365473 C e ponAbe2.chr4 21637389 0 + 198332218 C e panTro4.chr4 21462090 0 + 193495092 C a score=0.000000 s hg38.chr4_KI270790v1_alt 73491 435 + 220246 CCACATTTTCTTAATCCATGTGTTaaatgtggcacatatacaccatggaatactatgcagccataaaaaatgatgagttcatgtcctttgtagggacatggatgaaattggaaatcatcattctcagtaaactatcgcaagaacaagaaaccagacaccgcatattctcactcataggtgggaattgaacaatgagatcacatggacacaggaaggggaatatcacactctggggactgttgtggggtggggggaggggggagggatagcattgggagatatacctaatgctagatgatgagttagtgggtgcagcacaccagcatggcacatgtatacatatgtaactaatctgcacaatgtgcacatgtaccctaaaacttaaagtataataataaaaaaaaaaAACAAGTTATCACTTTaaaaaaaaaaaaa e mm10.chr5 49177171 108 + 151834684 I e chlSab2.chr27 19839613 1 - 48547382 I e macFas5.chr5 20757393 0 + 189454096 C e rheMac3.chr5 16716204 0 + 184069350 C e calJac3.chr3 21191989 0 - 190850796 C e canFam3.chr3 3776054 5 - 91889043 I e papAnu2.chr5 16353359 0 + 178775436 C e nomLeu3.chr20 20249607 0 - 85365473 C e ponAbe2.chr4 21637389 0 + 198332218 C e panTro4.chr4 21462090 0 + 193495092 C a score=22999.000000 s hg38.chr4_KI270790v1_alt 73926 10 + 220246 aagaacaaac s panTro4.chr4 21462090 10 + 193495092 aagaacaaac i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21637389 10 + 198332218 aagaacaaac i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20249607 10 - 85365473 AAGAACAAAC i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16716204 10 + 184069350 AAGAACAAAA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20757393 10 + 189454096 AAGAACAAAA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16353359 10 + 178775436 AAGAACAAAA i papAnu2.chr5 C 0 C 0 s calJac3.chr3 21191989 10 - 190850796 aagaacaaac i calJac3.chr3 C 0 C 0 e mm10.chr5 49177171 108 + 151834684 I e chlSab2.chr27 19839613 1 - 48547382 I e canFam3.chr3 3776054 5 - 91889043 I a score=3600.000000 s hg38.chr4_KI270790v1_alt 73936 1 + 220246 c s panTro4.chr4 21462100 1 + 193495092 c i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21637399 1 + 198332218 c i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20249617 1 - 85365473 C i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16716214 1 + 184069350 C i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20757403 1 + 189454096 C i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16353369 1 + 178775436 C i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19839614 1 - 48547382 C i chlSab2.chr27 I 1 C 0 s calJac3.chr3 21191999 1 - 190850796 c i calJac3.chr3 C 0 C 0 e mm10.chr5 49177171 108 + 151834684 I e canFam3.chr3 3776054 5 - 91889043 I a score=343591.000000 s hg38.chr4_KI270790v1_alt 73937 98 + 220246 atacacaaaattaaaaGGCAAGTCAATTGCAATTATTGGTAGTAATTATTTaggaaagaggaaaggagagaagccagaacaga----aataccatttcactt s panTro4.chr4 21462101 98 + 193495092 atacacggaattaaaaggcaagtcaATTGCAATTATTGGTAGTAATTATTTAGGAAAGAGGAAAGGAGAGAAGCCAGAACAGG----AATACCATTTCACTT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21637400 98 + 198332218 atacacagaattaaaaggcaagtcaATTGCAATTATTGGTAGCAATTATTTAGGAAAGAAGAAAGGAGAGAAGTCAGAACAGG----AATACCAGTTCACTT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20249618 98 - 85365473 ATACACGGAATTAAAAGGCAAGTCAATTGCAATTATTGGTAGCAATTATTTAGGAAAGAGGAAAGGAGAGAAGCCAGAACAGG----AATACCATTTCACTT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16716215 98 + 184069350 ATACATAGAATTAAAAGGCAAGTCAATTGCAATTATCGGTAGCAATTATTTAGAAAAGAGGAAAGGAGAGAAGCCAGAACAGG----AATACCATTTCACTC i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20757404 98 + 189454096 ATACATAGAATTAAAAGGCAAGTCAATTGCAATTATCGGTAGCAATTATTTAGAAAAGAGGAAAGGAGAGAAGCCAGAACAGG----AATACCATTTCACTC i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16353370 98 + 178775436 ATACATAGAATTAAAAGGCAAGTCAATTGCAATTATCGGTAGCAATTatttagaaaagaggaaaggagagaagccaGAACAGG----AATACCATTTCACTT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19839615 98 - 48547382 ATACATAGAATTAAAAGGCAAGTCAATTGCAATTATCGGTAGCAATTATTTAGAAAAGAGGAAAGGAGAGAAGCCAGAACAGG----AATACCATTTCACTT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21192000 85 - 190850796 atacacagaattaaaaggcaagtcaATTGC-------------AATCATTTAGAAAAGAGGAAAAGAGAGAAGCCAGAACAGG----AGTACCCTATCACTT i calJac3.chr3 C 0 C 0 s canFam3.chr3 3776059 102 - 91889043 ATAAACAGAATTAAAAGGCAAGTCAATTACAATTATCGGTACCAATTATTTGGAGAAGAGGAAAGAAGAGTAATCAGAACACGTGACTATACCATTTTTCCT i canFam3.chr3 I 5 I 7 e mm10.chr5 49177171 108 + 151834684 I a score=92650.000000 s hg38.chr4_KI270790v1_alt 74035 40 + 220246 ataattgtgc-tagtattgattttt-----gtctttcccacttcct s panTro4.chr4 21462199 40 + 193495092 ACAATTGTGC-TAGTATTGATTTTT-----GTCTTTCCCGCTACCT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21637498 40 + 198332218 ATAACTGTGC-TAGTATTGATTTTT-----GTCTTTCCCACTTCCT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20249716 40 - 85365473 ATAATTGTGC-TAGTATTGATTTTT-----GTCTTTCCCACTTCCT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16716313 40 + 184069350 ATAGTTGTGA-TAGTATTTATTTTT-----GTCTTTCCTACTTCCT i rheMac3.chr5 C 0 I 1 s macFas5.chr5 20757502 40 + 189454096 ATAGTTGTGA-TAGTATTTATTTTT-----GTCTTTCCTACTTCCT i macFas5.chr5 C 0 I 1 s papAnu2.chr5 16353468 40 + 178775436 GTAATTGtga-tagtatttattttt-----gtctttcctacttcct i papAnu2.chr5 C 0 I 1 s chlSab2.chr27 19839713 40 - 48547382 GTAATTGTGA-TAGTATTTATTTTT-----GTCTTTCCTACTTCCT i chlSab2.chr27 C 0 I 303 s calJac3.chr3 21192085 46 - 190850796 GTCATTGTACTTAGTATTTCTTTTCAAAAAAGAAATACTACTTCCT i calJac3.chr3 C 0 C 0 e mm10.chr5 49177171 108 + 151834684 I e canFam3.chr3 3776161 7 - 91889043 I a score=-1240.000000 s hg38.chr4_KI270790v1_alt 74075 1 + 220246 -c s panTro4.chr4 21462239 1 + 193495092 -C i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21637538 1 + 198332218 -C i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20249756 1 - 85365473 -C i nomLeu3.chr20 C 0 C 0 s calJac3.chr3 21192131 1 - 190850796 G- i calJac3.chr3 C 0 C 0 e mm10.chr5 49177171 108 + 151834684 I e chlSab2.chr27 19839753 303 - 48547382 I e macFas5.chr5 20757542 1 + 189454096 I e rheMac3.chr5 16716353 1 + 184069350 I e canFam3.chr3 3776161 7 - 91889043 I e papAnu2.chr5 16353508 1 + 178775436 I a score=1182713.000000 s hg38.chr4_KI270790v1_alt 74076 418 + 220246 ttttaaaatttt----tatttatttatttatttatttatttatttattta----------------------------tttatttatttatttatctttgagatggagtcttgctctattgcccaagctggagtgcagtggcgtgacctcagctcactgcaacctctgccttccagattcaagcaattctcatgcctcagcctccagagttgctgggattacaggcacccaccaccatgcctggctaatttttgtaattttagtagagatggggtttcgccatgttggtcaggctggtctcaaaatcctgacctcagatgatctgcctgccttggcctcccaaagtgctgagattacaggcatgagccactgggcctggccTAtttattttttaattgacaaataaaaactatatttttatggtatacagaatgatgctttgatatgt----TC s panTro4.chr4 21462240 398 + 193495092 TTTTAAAAATtt----tatttatttatttatttatttatttatttat------------------------------------------------ctttgagatggagtcttgctctattgcccaagctggagtgcagtggcgtgacctcagctcactgcaacctctgccttccagattcaagcaattctcatgcctcagcctccagagttgctgggattacaggcacccaccaccatgcctggctaatttttgtaattttagtagagatggggtttcgccatgttggtcaggctggtctcaaaatcctgacctcagatgatctgcctgccttggcctcccaaagtgctgagattacaggcatgagccactgggcctggccTAtttattttttaattgacaaataaaaactatatttttatggcatacaaaatgatgctttgatatgt----TC i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21637539 449 + 198332218 TTTTAAAAATTT----tatttatttatttatttatctatctatctatctatctatctatctatctatctatctatctttctatctatctatctatctttgagatggagtc-tgctctgttgcccaagctggagtgcagtggcgtgacctcagctcactgcaacctctgccttccagattcaagcaattctcatgcctcagcctccagagttgctgggattacaggcgcccaccaccatgcccggctaatttttgtatttttagtagagatggggtttcgccatattggtcaggctggtctcaaaatcctgacctcagatgatctacctgcttcggcctcccaaagtgctgagattacaggcatgaggcactgggcctggccTAtttatttcataattgacaaataaaaactatatttttatggtatacaaaataatgctttgatatgtgtactc i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20249757 414 - 85365473 TTTTAAAAATtt----tatttatttatttatttatttatttatttat------------------------------------ttatttatCTGTCTTGgagatggagtcttgctctgttgcccaagctggagtgcagtggcgtgacctcagctcactgcaacctctgccttccagattcaagcaattctcatgcctcagcctccagagttgctgggattacaggcgcccaccaccatgcccggctaatttttgtatttttagtagagatggggtttcaccatgttggtcaggctggtctcaaaatcctgacctcagatgatctgcctgcctcggcctcccaaagtgctgagattacaggcataagccactgtgcctgaccTAtttattttttaattgacaaataaaaactatatttttatggtatacaaaatgatgctttgatatgtgtattc i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16716354 425 + 184069350 TCTTAAAATTTT----tatctatctatctatctatctatctatctatctatcta------------------------tctatctatctatctatctttgagatgaagtcttgctctgttgcccaagctggggtgcagtggcatgacctcagcttactgcaacctctgccatccagattcaagcaattctcatgcctcagcctccagagtttctgggattacaggcgtccaccaccatgcctggctaatttttgtatttttagtggagatggggtttcgccatgttggtcaggcgggtctcaaactcctgacctcagatgatctGCCTGCCTCAG-CTCCCAAATTGCTGAGATTCCAGGCACAAGCCACTATGCCTGGCCTAtttattttttaatcgacaaataaaaactatatttttatggtgtacaaaatgatgctttgatatgtgtattc i rheMac3.chr5 I 1 C 0 s macFas5.chr5 20757543 425 + 189454096 TCTTAAAATTTT----tatctatctatctatctatctatctatctatctatcta------------------------tctatctatctatctatctttgagatgaagtcttgctctgttgcccaagctggagtgcagtggcgtgacctcagcttactgcaacctctgccatccagattcaagcaattctcatgcctcagcctccagagtttctgggattacaggcgtccaccaccatgcctggctaatttttgtatttttagtggagatggggtttcgccatgttggtcaggcgggtctcaaactcctgacctcagatgatctgcctgcctcag-ctcccaaattgctgagattacaggcacaagccactatgcctggccTAtttattttttaatcgacaaataaaaactatatttttatggtgtacaaaatgatgctttgatatgtgtattc i macFas5.chr5 I 1 C 0 s papAnu2.chr5 16353509 429 + 178775436 ttttaaaatttttatctatctatctatctatctatctatctatctatctatcta------------------------tctatctatctatctatctttgagatgaagtcttgctctgttgcccaagctggagtgcagtggcgtgacctcagcttactgcaacctctgccatccagattcaagcaattctcatgcctcagcctccagagtttctgggattacaggcgtccaccaccatgcctggctaatttttgtatttttagtggagatagggtttcgccatgttggtcaggcgggtctcaaactcctgacctcagatgatctgcctgcctcag-ctcccaaattgctgagattacaggcacaagccactatgcctggcctatttattttttaatcgacaaataaaaactatatttttatggTGTACAAAATGATGCTTTGATATGTGTATTC i papAnu2.chr5 I 1 C 0 s chlSab2.chr27 19840056 421 - 48547382 TTTTAAAATTTT--------tatctatctatctatctatctatctatctatcta------------------------tctatctatctatctatctttgagatgaagtcttgctctgttgcccaagctggagtgcagtggcgtgacctcagcttaccgcaacctctgccatccagattcaagcaattctcctgcctcagcctccagagtttctgggattacaggcgtccaccaccatgcctggctaatttttgtatttttagtggagatggggtttcgccatgttggtcaggcgggtctcaaactcctgacctcagatgatctgcctgcctcag-ctcccaaattgctgagattacaggcacgagccactatgcctggccTAtttattttttaatcgacaaataaaaactatatttttgtggtgtacaaaatgatgctttgatatgtggattc i chlSab2.chr27 I 303 C 0 s calJac3.chr3 21192132 415 - 190850796 TTTTAAAAATtc----tatctatctatctatctatctatc-atctatcta----------------------------tccatccatccatctatctttgagatggaatcttgctctgttgcccaagctggagtagagtggcatgacctcagctcactgcaacctctgccttccagattcaagtgattctcatgactcagcctccagagttgctgggattacagtcacctgccaccacacctggctaatttttgtatttttagtagagtcgaggtatcaccacattggccaggctggttgggaactcctgacctcaggtgatccacctgcctcagcttcccaaagtgctgggattacaggcatgagccaccatgcctggccTACTTAttttttaattgacaaataaaaactata------tgatgtacaaaatgatgctttaatatgtgtatgc i calJac3.chr3 C 0 C 0 e mm10.chr5 49177171 108 + 151834684 I e canFam3.chr3 3776161 7 - 91889043 I a score=4095.000000 s hg38.chr4_KI270790v1_alt 74494 1 + 220246 A s panTro4.chr4 21462638 1 + 193495092 A i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21637988 1 + 198332218 a i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20250171 1 - 85365473 a i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16716779 1 + 184069350 a i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20757968 1 + 189454096 a i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16353938 1 + 178775436 A i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19840477 1 - 48547382 a i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21192547 1 - 190850796 a i calJac3.chr3 C 0 C 0 s mm10.chr5 49177279 1 + 151834684 A i mm10.chr5 I 108 C 0 e canFam3.chr3 3776161 7 - 91889043 I a score=2123822.000000 s hg38.chr4_KI270790v1_alt 74495 656 + 220246 TGCTTAGCATTTTAATTAGAAATTGGAACCACATTCACAAAAGATAATGTATAATT-ATAGAA-ATCATAACTATGCAAATATTAGAGGGCATTTACTATATACATAAGTCTAACT-GGATATTGGTAAAGAAA---CAGTGTA-CATCAGGAAGGG-TCAGTGCTTGGTGGCTTCTTAGAGCTGAGGGCATCACATTATGGCCCTCACTTTAGTGCAGGAAATCCTGTAGGTTTTTTGCTCTAAGCCATA-----TATATAGCCAGAATTCCTTGTTTGTCCCACATGGCTGGGCTTTGTG--ATGTCCAGGCAAAATCTTATATTTGGAATTTTTTATCTTCTTTTCTATTTggctgtcagttggccacttct-aggaatgttatgaaggaaatctctatatttgat---g--atttgata-ttgaaaatatctaaggtc-ATAGGCCTGTGATTACACCTGGTTTCTTTTTATCTT---------ACTTAGAGGTTGTAGT---GCACATTTAGAACCTTAGAATACTGTGTTCCGTTAGAGACATTTAGGCTCATGCCATATCTGGAACAAATTGTTGTGTCTAAACGTC-TCTAGGGGAAGACAATATTTACAACAAGC-AACTGCTTTCGGTAATACAGT---GAAATATACAAATATGTTCTTCA--------------TGCA-TTTTTACCTATGC-TATAC--TT s panTro4.chr4 21462639 655 + 193495092 TGCTTAGCATTTTAATTAGAAATTGGAACCACATTCACAAAATATAATGTATAATT-ATAGAA-ATCATAACTATGCAAATATTAGAGGGCATTTACTATATACATAAGTCTAACT-GGATATTGGTAAAGAAA---CAGTGTA-CATCAGGAAGGG-TCAGTGCTTGGTGGCTTCTTAGAGCTGAGGGCATCACATTATGGCCCTCACTTTAGTGCAGGAAATCCTGTAGGTTTTTTGCTCTAAGCCATA-----TATATAGCCAGAATTCCTTGTTTGTCCCACATGGCTGGGCTTTGTG--ATGTCTAGGCAAGATCTTATATTTGGAATTTTTTATCTTCTTTTCTATTTggctgtcagttggccacttctcaggaatgttatgaaggaaatctctatatttgat---g--atttgata-ttgaaaatatctaaggtc-ATAGGCCTGTGATTACACCTGGTTTCTTTTTATCTT---------ACTTAGAGGTTGCAGT---GCACATT-AGAACCTTAGAATACTGTGTTCTGTTAGAGACATTTAGGCTCATGCCATATCTGGAACAA-TTCTTGTGTCTAAACGTC-TCTAGGGGAAGACAATATTTACAACAAGC-AACTGCTTTCGGTAATACAGT---GAAATACACAAATATGTTCTTCA--------------TGCA-TTTTTACCTATGC-TATAC--TT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21637989 651 + 198332218 tGCTTAGCATTTGAATTAGAAATTGGAACCACATTCACAAAAGATAATGTATAATT-ATAG-A-ATCATAACTACGCAAATATTAGAGGGCATTTACTATATACATAAGTCTAACT-GGATATTGGTAAAGAAA---CAGTGTA-CATCAGGAAGAG-TCAGTGCTTGGTGGCTTCTTagagctgagggcatcacattatggccctcactttagtgcaggaaatcctgtaggTTTTTTGCTCTAAGCCACA-----TATATAGCCATAATTCCTTGTTTCTCCCACGTGGCTGGGCTTTGTG--ATGTCCAGGCAAGATCTTATATTTGGAATTTTTTATCTTCTTTTCTATTGggctgtcagttggccacttctcaggaatgttatgaaggaaatctctatatttgat---g--ATTTGATA-TTGAAAA----TAAGGTT-ATAGGCCTGTGATTACACCTGGTTTCTTTTTATCTT---------ACTTAGAGGTTGTAGT---GCACATT-AGAACCTTAGAATACTGTGTTCCCTTAGAGACATTTAGGCTCATGCCATATCTGGAACAAATTCTTGTGTCTAAACGTC-TCTAGGGGAAGACAGTATTTATAACAAGC-GACTGCTTTGGGTAATGCAGT---GAAATACACAAATATGTTCTTCA--------------TGCA-TTTTTACCTATGC-TATAC--TT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20250172 650 - 85365473 tGTTTAGCATTTTAATTAGAAATTGGAACCACATTCACAAAAGATAATGTATAATT-ATATAA-ATCATAACTATGCAGATATTAGAGGGCATTTACTATATACATAAGTCTAACT-GGATATTGGTAAAAAAA---CAGTGTA-CATCAGGAAGGG-TCAGTGCTTGGTGCCTTCTTAGAGCTGAGGGCATCACATTATGGCCCTCACTTTAGTGCAGGAAATCCTGTAGGTTTTTTGCTCTAAGCCATA-----TATATAGCCAGAATTCCTTGTTT-TTCCACATGGCTGGGCTTTGTG--ATGTCCAGGCAAGATCTTATATTTGGAATTTTTTATC-----TTCTATTTggctgtcagttggccatttctcaggaatgctatgaaggaaatccctatatctgat---g--atttgata-ttgaaaatatctaaggtc-ATAGGCCTGTGATTACACCTGGTTTCTTTTTATCTT---------ACTTAGAGGTTGTAGT---GCACATT-AGGACCTTAGAATACTGTGTTCCCTTAGAGATATTTAGGCTCACGCCGTATCTAGAACAAATTCATGTGTCTAAATGTC-TCTAGGGCAAGACAATATTTATAACAAGC-GACTGCTTTCGGTAATACAGT---GAAATACACGAATATGTTCTTCG--------------TGCA-TTTTTACCTATGC-TATAC--TT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16716780 657 + 184069350 CACTTAGCATTTTAATTAGAAATTGGAACCACATTCACAAAAGATAATGCATAATT-ATAGAA-ATCATAACTATGCAACTATTAGAGGGCATTTACTATATACATAAGTCTAACT-GGATATTGGCAAAGAAA---CAGTGTA-CATCAGGAAGGG-TCAGTGCTTGGTGGCTTCTTAGAGTTAAGGGCATCACATTATGGCTTTCACTTTAGTGCAGGAAATCCTGTAGGTTTGTTGCTCAAAGCCATG-----TATATAGCCAGAATTCCTTGTTTGTCCCACATGGCTGGGTTTTGTG--ATGTCCAGGCAAGATCTTATATTTGGAATTTTTTATTTTATTTTCTATTTggctgtcagttggccacttctcaggaatgttatgaaggaaatccctatatttgat---g--atctgata-ttgaaaatacctaaggtc-ATTGGCCTGTGATTACACCTGGTTTA-TTTTATCTT---------ACTTAGAGGTTGTAGT---GCACATT-AGAACCTTAGAATACTATGTTCCCTTAGAGACATTTAGGCTCACACCATATCTGGAACAAATTCATGTGTCTAAATATTGTCTAGGGGAAGACAATATTTATAACAAGT-GACTGCTTTCGGTAATACAGT---GAAATACATGAATATGTTCTTCA-------------GTGCA-TTTTTACCTGTGC-TATAC--TT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20757969 657 + 189454096 CACTTAGCATTTTAATTAGAAATTGGAACCACATTCACAAAAGATAATGTATAATT-ATAGAA-ATCATAACTATGCAACTATTAGAGGGCATTTACTATATACATAAGTCTAACT-GGATATTGGCAAAGAAA---CAGTGTA-CATCAGGAAGGG-TCAGTGCTTGGTGGCTTCTTAGAGTTAAGGGCATCACATTATGGCTTTCACTTTAGTGCAGGAAATCCTGTAGGTTTGTTGCTCAAAGCCATG-----TATATAGCCAGAATTCCTTGTTTGTCCCACATGGCTGGGTTTTGTG--ATGTCCAGGCAAGatcttatatttggaattttttattttattttctatttggctgtcagttggccacttctcaggaatgttatgaaggaaatccctatatttgat---g--atctgata-ttgaaaatatctaaggtc-ATTGGCCTGTGATTACACCTGGTTTA-TTTTATCTT---------ACTTAGAGGTTGTAGT---GCACATT-AGAACCTTAGAATACTATGTTCCCTTAGAGACATTTAGGCTCACACCATATCTGGAACAAATTCATGTGTCTAAATATTGTCTAGGGGAAGACAATATTTATAACAAGT-GACTGCTTTCGGTAATACAGT---GAAATACATGAATATGTTCTTCA-------------GTGCA-TTTTTACCTGTGC-TATAC--TT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16353939 655 + 178775436 CACTTAGCATTTTAATTAGAAATAGGAACCACATTCACAAAAGATAATGTATAATT-ATAGAA-ATCATAACTATGCAACTATTAGAGGGCATTTACTATATACATAAGTCTAACT-GGATATTGGCAAAGAAA---CAGTGTA-TATCAGAAAGGG-TCAGTGCTTGGTGGCTTCTTAGAGTTAAGGGCATCACATTATGGCTTTCACTTTAGTGCAGGAAATCCTGTAGGTTTGTTGCTCAAAGCCATG-----TATATAGCCAGAATTCCTTGTTTGTCCCACATGGCTGGGTTTTGTG--ATGTCCAGGCAAgatcttatatttggaattttttattttattttctatttggctGTCAGTTGGCCACTTCTCAGGAATGTTATGAAGGAAATCCCTATATTTGAT---G--ATCTGATA-TTGAAAATATCTAAGGTC-ATTGGCCTGTGATTACACCTGGTTTA-TTTTATCTT---------ACTTAGAGGTTGTAGG---GCACATT-AGAACCTTAGAATACTATGTTCCCTTAGAGACATTTAGGCTCACACCATATCTGGAACAAATTCATGTGTCTAAATATTGTCTAGGGGAAGACAATATTTATAACAAGT-GACTGCTTTCG--AATACAGT---GAAATACATGAATATGTTCTTCA-------------GTGCA-TTTTTACCTGTGC-TATAC--TT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19840478 657 - 48547382 CACTTAGCATTTTAATTAGAAATTGGAACCACATTCACAAAAGATAATGTATAATT-ATAGAA-ATCATAACTATGCAACTATTAGAGGGCATTTACTATATACATAAGTCTAACT-GGATATTGGCAAAGAAA---CAGTGTA-CATCAGGAAGGG-TCAGTGCTTGGTGGCTTCTTAGAGTTAAGGGCATCACATTATGGCTTTCACTTTAGTGCAGGAAATCCTGTAGGTTTGTTGCTCAAAGCCATG-----TATTTAGCCAGAATTCCTTGTTTGTGCCACATGGCTGGGTTTTGTG--ATGTCCAGGCAAGATCTTATATTTGGAATTTTTTATTTTATTTTCTATTTggctgtcagttggccacttctcaggaatgttatgaaggaaatccctatatttgat---g--atctgata-ttgaaaatatctaaggtc-ATTGGCCTGTGATTACACCTGGGTTA-TTTTATCTT---------ACTTAGAGGTTGTAGT---GCACATT-AGAACCTTAGAATACTATGTTCCCTTAGAGACATTTAGGCTCACACCATATCTGGAACAAATTCATGTGTCTAAATATTGTCTAGGGGAAGACAATATTTATAACAAGT-GACTGCTTTTGGTAATACAGT---GAAATACATGAATATGTTCTTCA-------------GTGCA-TTTTTACCTGTGC-TATAC--TT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21192548 662 - 190850796 tGGCTAGCATTTTAATTAAAAATTGAAACTACATTCACAAAAGATAATGTATAATT-ATAGAA-ATCATAACTATGTAAATATTAAAGGGAATTTACTATATTCATAAATGTAACT-GGATATTGATAAAGAAA---CAGTGTA-CATCAGGAAGGG-TCAATGCTTGATGACTTTCTAGAGTTGATGGCATCACATTATGTCAATCACTTTAGTGCAGGAAACCCTGTAGGTTTTTTGGGCTACAGCATA-----CATATTAACAGAACTCCTTGTTTGTCCTACATGGCTGGGCTTTGTGATATGTCCAGACAAGATCTTATATTTGGAAATTTTTAATTGTTTTCCTATTcagaggtcagttgaccacttctcaggaatcctatgaaggagaaccctacatttgat---g--atttgata-ttgaaaatatctaaggtc-ATAGGCTTTTGATTACACCTGGTTTCTTTTTATCTT---------ACTTAGAGGTTGTAGT---GCACATC-AGAACCTTAGAACACTGTGTTCCCCTAGAGACATCTAGACTCATGTCACATCTAGAACAAATTCATGTGTCTAAATTTC-TCTAGGGGAAGACAATATTTATAACAAGTGGACTGCTTTTGGTAATACAGT---GAAATACACTAATATGTACTTCA-------------ATGCATTTTTTACCTACACTTATAC--CT i calJac3.chr3 C 0 C 0 s mm10.chr5 49177280 608 + 151834684 TACCTAACATTTAAA-AAGAAACTGGGACCACACTCATAGCGGATCATGAATAAGTAATGCCT-ATTTCAATTATGCAAAAATTAGAAGCAATTAGCTAAGTATGT--TTCTGACTCAGATACTGGTAGAGAAAAGGCAGTGCAGCATTAGGGTG------ATAGTAAGCGACTTCAAGTAGGTGAGATACTCACA-AAGAGAAAGGAGTTTATGCCATGAA--CCTGTGCTTTCCTTCATATGAGCACAG-----TATATTTACAGAATTTCTTGTTTATTC-ACACGACTGAGATTTGTG--GGAACCTAGAAAAG--CTATATTCACAGTTCTTCTTCCTCTTCTTTTCCGGGC---CTGTTAGCCACTTCCCAAGAATGTTTTGGAAGGTATCCCTCTATTACAC---GATATCTGAGGCTTGGAAACACCTAAGCTC-ATCTGTCTGTGACACTACCTGATCTTTTTTTAATTTTTAAATAACACTTA-----TTTAGTTTGGTAAATT-AGAACACAAATAAA------------AGAGTAAGTAAG--------CAAAT----AACAAA---------CTAACTATA------GGGAAAACCATATTTATAATAAGTTGATTGTTTTGGGTAATACACT---TCCAAA----------TTCTTCA-------------GTGAA-ATTTCAC---TAC-TATACTTTT i mm10.chr5 C 0 C 0 s canFam3.chr3 3776168 621 - 91889043 TGCTTAGCATTT-AATAGGAAATTCAGACCACATACACAGAAAAGATTTTATAATT-ATAGAATATCGTAAATATGCAAATATTAGATGGAATTAAC---GGATACAAATCTGACT-GGATATCAGTAAAGAAT---CAGACTA-CACCAGATGGGGACCAATGCTAGTTGGCTTCCTGGAATTGAGTGCATCACA-TATGGCATCCAA---AATGCAAGGAACCTTTTAGGATCCTTGACCTGAACCGTGTGGATTGTATTGCACAAAATTCCTGTTTGTCT-ACCTCATGGGGCTTTATG--AGGTTACAGTAAGGTCGTACATTTGGAGTTCTTCTCCTTCTCTCCCATTGAGAGGTTGATTGGACACTTTACAAG--TATTATGAAACAGCTCCCTACATTTCACAAAG--ACTTGGGC-TTGAAAATGAGTGAGGTCAACAGCCCTACAACTACACCTGGTCTCCTCTTAGCTC---------ACTCGGAGGCTGAAAT---GC--ATC-ACAAC---------------------------------------------------ACGAACGCACAATTCCAAGTATC-TCTAGAGCAAGACAATAGTTATAACAAGTGGGTCGCTTTCACTGATAGACTTCAAAAATTCTTCAATACATTTTGCCTACACTACATGCTGTGCt-ttttttttaatat-tttat--tt i canFam3.chr3 I 7 I 184 a score=221650.000000 s hg38.chr4_KI270790v1_alt 75151 59 + 220246 TGTGCCTTTTAAGCTAAGTTTTTAAATTTGCAATTTGATCTACCGAACAGTTCCCCATT s panTro4.chr4 21463294 59 + 193495092 TGTGCCTTTTAAACTAAGTTTTTAAATTTGCAATTTGATCTACCAAACAGTTCCCCATT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21638640 59 + 198332218 TGTGCCTTTTAAACTAAGTTTTTAAATTTGCAATTTGATCTACCCAACAGTTCCCCATT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20250822 59 - 85365473 TGTGCCTTTTAAACTAAGTTTTTAAATTTGCAATTTGATCTACTCAACAGTTCCCCATT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16717437 59 + 184069350 TGTGCTTTTTAAACTAAGTTTTTAAATTTGCAATTTGATCTACCCAACAGTTCCCTATA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20758626 59 + 189454096 TGTGCTTTTTAAACTAAGTTTTTAAATTTGCAATTTGATCTACCCAACAGTTCCCTATA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16354594 59 + 178775436 TGTGCTTTTTaaactaagtttttaaatttgcaatttGATCTACCCAACAGTTCCCTATA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19841135 59 - 48547382 TGTGCTTTTTAAACTAAGTTTTTAAATTTGCAATTTGATCTACCCAACAGTTCCCTATA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21193210 58 - 190850796 TGTGC-TTTAAAACTAAGTTTTTAAATTTGCAAGTTGATCTACCCAACAGTTCTCCAat i calJac3.chr3 C 0 I 1185 s mm10.chr5 49177888 55 + 151834684 TTTGCTTTGTAAACTAAAATTTCAAATGTACAG-TTGTTCTAC---ATAGTCTCCCATT i mm10.chr5 C 0 C 0 s canFam3.chr3 3776973 59 - 91889043 TGTGCTTTTTAAATGAAGTTTCTAAATTTACAGTCTGATATCCCTGATAGTTCATCATA i canFam3.chr3 I 184 C 0 a score=529276.000000 s hg38.chr4_KI270790v1_alt 75210 152 + 220246 AATAGTAAAC-ATTTATAGTTTTCTGAT-TTCTTGCTGGAATTATATTCACATCCAGATCTTCATTATTTTTCCATTTCC-AAATTTGT-TTTCTTCACCTGCCTCTGACTTATGAAGCAAGTTCT---CCT-CCAGAAAATGTTTACTATTAatatata s panTro4.chr4 21463353 152 + 193495092 AATAGTAAAC-ATTTATAGTTTTCTGAT-TTCTTGCTGGAATTATATTCACATCCAGATCTTCATTATTTTTCCATTTCC-AAATTTGT-TTTCTTCACCTACCTCTGACTTATGAAGCAAGTTCT---CCT-CCAGAAAATGTTTACTATTAatatata i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21638699 152 + 198332218 AATAGTAAAC-ATTTATAGTTTTCTGAT-TTCTTGCTGGAATTATATTCACATCCAGATCTTCATTATTTTTCCATTTCC-AGATTTGT-TTTGTTCACCTACCTCTGACTTATGAAGCAAGTTCT---CCT-CCAGAAAATGTTTACTATTAatatata i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20250881 152 - 85365473 AATAGTAAAC-ATTTATAGTTTTCTGAT-TTCTTGCTGGAATTATATTCACATCCAGATCTTCATTATTTTTCCATTTGC-AGATTTGT-TTTGTTCACTTACCTCTGACTTATGAAGCAAGTTCT---CCT-CCAGAAAATGTTTACtatttatatata i nomLeu3.chr20 C 0 I 6 s rheMac3.chr5 16717496 153 + 184069350 AATAGTAAAC-ATTTACAGTTTTCTGAT-TTCTTGCTGGAATTATATTCATATCCAGGTCTTCATTATTTTTCCAGTTCC-AAATTGGTGTTTGTTGACCTACCTCTGACTTATGAAGCAAGTTCT---CCT-CCAGAAAATGTTTACTATTAATATATA i rheMac3.chr5 C 0 M 275 s macFas5.chr5 20758685 153 + 189454096 AATAGTAAAC-ATTTACAGTTTTCTGAT-TTCTTGCTGGAATTATATTCATATCCAGATCTTCATTATTTTTCCAGTTCC-AAATTGGTGTTTGTTGACCTACCTCTGACTTATGAAACAAGTTCT---CCT-CCAGAAAATGTTTACTATTAatatata i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16354653 153 + 178775436 AATAGTAAAC-ATTTACAGTTTTCTGAT-TTCTTGCTGGAATTATATTCATATCCAgatcttcattatttttccagTTCC-AAATTGGTGTTTGTTGACCTACCTCTGACTTATGAAGCAAGTTCT---CCT-CCAGAAAATGTttactattaatatata i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19841194 153 - 48547382 AATAGTAAAC-ATTTACAGTTTTCTGAT-TTCTTGCTGGAATTATATTCATATCCAGATCTTCATTATTTTTCCAGTTCC-AAATTGGTGTTTGTTGACCTACCTCTGACTTATGAAGCAAGTTCT---CCT-CCAGAAAATGTTTACTACTAatatata i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21194453 152 - 190850796 aaaaGTAAAC-ATTTATAG-TTTCTGAT-TCCTTGCTGGAATTATATTCATATCCAGATCCTCATTATTTTTCCATTTCC-AAATTTCTTTTTGTTCACCTACCTCTGACTTATGAAGCAAGTTCT---CTT-CCAGGAAATGTTTACtattaaaatata i calJac3.chr3 I 1185 C 0 s mm10.chr5 49177943 159 + 151834684 AACGATAAGCAAGTAATAGTTTCCAGGTATTTTTTCTAAAATTATATCCCTACCTAAGAATTAAGTATTTTCTTGTCTCCTTGATTTTCCTTTGCTTTCCTAAATATGAATTAAAAAGCTAGTTATGAGTTT-GAAAAGAATCATTAGTTTTAAAACATA i mm10.chr5 C 0 C 0 s canFam3.chr3 3777032 144 - 91889043 AATGGTAAACAATTTATAGTCATCTTCT-TCCTTGTTGGAATTACATACCCATTTAGAGCTCCATTACTTTCCCA-TTCC-AAATTTGGTTTTGCT--CCCAGATCTGACTTATGAAACAAGCTCT---CATATCTGGACAGGTTTACTATT-------- i canFam3.chr3 C 0 C 0 a score=8852.000000 s hg38.chr4_KI270790v1_alt 75362 3 + 220246 tat s panTro4.chr4 21463505 3 + 193495092 cat i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21638851 3 + 198332218 tat i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20251039 3 - 85365473 tat i nomLeu3.chr20 I 6 C 0 s macFas5.chr5 20758838 3 + 189454096 tat i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16354806 3 + 178775436 tat i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19841347 3 - 48547382 tat i chlSab2.chr27 C 0 I 60 s calJac3.chr3 21194605 3 - 190850796 tat i calJac3.chr3 C 0 C 0 s mm10.chr5 49178102 3 + 151834684 TAT i mm10.chr5 C 0 I 2 e rheMac3.chr5 16717649 275 + 184069350 M e canFam3.chr3 3777176 0 - 91889043 C a score=10851.000000 s hg38.chr4_KI270790v1_alt 75365 14 + 220246 gtatgtatgtatat s panTro4.chr4 21463508 14 + 193495092 gtatgtatgtatat i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21638854 14 + 198332218 gtatgtatgtatgt i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20251042 14 - 85365473 gcatgtatatatat i nomLeu3.chr20 C 0 C 0 s macFas5.chr5 20758841 14 + 189454096 gtgtatatatatat i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16354809 14 + 178775436 gtgtgtgtatatat i papAnu2.chr5 C 0 C 0 s calJac3.chr3 21194608 14 - 190850796 tttttaatatataa i calJac3.chr3 C 0 I 1 s mm10.chr5 49178107 12 + 151834684 CAATGCTTCAAT-- i mm10.chr5 I 2 C 0 e chlSab2.chr27 19841350 60 - 48547382 I e rheMac3.chr5 16717649 275 + 184069350 M e canFam3.chr3 3777176 0 - 91889043 C a score=3096.000000 s hg38.chr4_KI270790v1_alt 75379 2 + 220246 at s panTro4.chr4 21463522 2 + 193495092 at i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21638868 2 + 198332218 at i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20251056 2 - 85365473 at i nomLeu3.chr20 C 0 C 0 s macFas5.chr5 20758855 2 + 189454096 at i macFas5.chr5 C 0 C 0 s calJac3.chr3 21194623 2 - 190850796 at i calJac3.chr3 I 1 C 0 s mm10.chr5 49178119 1 + 151834684 -T i mm10.chr5 C 0 I 1 e chlSab2.chr27 19841350 60 - 48547382 I e rheMac3.chr5 16717649 275 + 184069350 M e canFam3.chr3 3777176 0 - 91889043 C e papAnu2.chr5 16354823 0 + 178775436 C a score=10679.000000 s hg38.chr4_KI270790v1_alt 75381 45 + 220246 tactactaata-tactactaatatatgtatgtatgtatgt----ttacta s panTro4.chr4 21463524 49 + 193495092 tactactaata-tactactaatatatgtatgtatgtatgtatgtttacta i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21638870 38 + 198332218 --------atattactactaatatacgcatgtatgtatgt----ttacta i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20251058 45 - 85365473 tactactaata-tactactaatatatgtatgtatgtatgt----ttacta i nomLeu3.chr20 C 0 C 0 s calJac3.chr3 21194625 43 - 190850796 GGTGTATAAAA-TGATGCTTTGATATGTA--TATGCATAC----TTAGCA i calJac3.chr3 C 0 I 65 s mm10.chr5 49178121 28 + 151834684 ------------------AATTAAAAGTATTTGGCTACAA----ATAACA i mm10.chr5 I 1 I 2 s canFam3.chr3 3777176 25 - 91889043 --------------CTAAGAATATATGTAT-------TGC----TTAGTG i canFam3.chr3 C 0 C 0 e chlSab2.chr27 19841350 60 - 48547382 I e macFas5.chr5 20758857 0 + 189454096 C e rheMac3.chr5 16717649 275 + 184069350 M e papAnu2.chr5 16354823 0 + 178775436 C a score=12272.000000 s hg38.chr4_KI270790v1_alt 75426 41 + 220246 -----------ctaatatatgtat-tatgtatgtactacca-----atatatgtgtgt s panTro4.chr4 21463573 42 + 193495092 -----------ctaatatatgtatgtatgtatgtaCTACCA-----atatatgtgtgt i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21638908 42 + 198332218 -----------ctactatatgtatgtatgtatgtactacta-----atatatgtatgt i ponAbe2.chr4 C 0 I 46 s nomLeu3.chr20 20251103 47 - 85365473 -----------ctaatatatgtatgtatgtatgtactaatatatgtatgtatgtgtgt i nomLeu3.chr20 C 0 C 0 s mm10.chr5 49178151 29 + 151834684 -----------CTAACATAAGCAT----------TCCACAA-----AC---TGTGAGT i mm10.chr5 I 2 C 0 s canFam3.chr3 3777201 34 - 91889043 CTTCAGTTTAATTAAGAGAAGTTT----------CCTACTA-----ATA--------- i canFam3.chr3 C 0 C 0 e chlSab2.chr27 19841350 60 - 48547382 I e macFas5.chr5 20758857 0 + 189454096 C e rheMac3.chr5 16717649 275 + 184069350 M e calJac3.chr3 21194668 65 - 190850796 I e papAnu2.chr5 16354823 0 + 178775436 C a score=300.000000 s hg38.chr4_KI270790v1_alt 75467 1 + 220246 g s panTro4.chr4 21463615 1 + 193495092 g i panTro4.chr4 C 0 C 0 s nomLeu3.chr20 20251150 1 - 85365473 g i nomLeu3.chr20 C 0 C 0 e mm10.chr5 49178180 0 + 151834684 C e chlSab2.chr27 19841350 60 - 48547382 I e macFas5.chr5 20758857 0 + 189454096 C e rheMac3.chr5 16717649 275 + 184069350 M e calJac3.chr3 21194668 65 - 190850796 I e canFam3.chr3 3777235 0 - 91889043 C e papAnu2.chr5 16354823 0 + 178775436 C e ponAbe2.chr4 21638950 46 + 198332218 I a score=-3176.000000 s hg38.chr4_KI270790v1_alt 75468 39 + 220246 tatatata----actacatagtaaaatatatatatacatagta s panTro4.chr4 21463616 43 + 193495092 tatatatatataactacatagtaaaatatacatacacatagta i panTro4.chr4 C 0 C 0 s mm10.chr5 49178180 18 + 151834684 --TATATA----GCTTCCTTGGCA------------------- i mm10.chr5 C 0 I 2 s canFam3.chr3 3777235 12 - 91889043 ---------------------------ACATTCATACTT---- i canFam3.chr3 C 0 C 0 e chlSab2.chr27 19841350 60 - 48547382 I e macFas5.chr5 20758857 0 + 189454096 C e rheMac3.chr5 16717649 275 + 184069350 M e calJac3.chr3 21194668 65 - 190850796 I e papAnu2.chr5 16354823 0 + 178775436 C e nomLeu3.chr20 20251151 0 - 85365473 C e ponAbe2.chr4 21638950 46 + 198332218 I a score=-10661.000000 s hg38.chr4_KI270790v1_alt 75507 104 + 220246 aaatatatatacacacacatatattagtagtaca--tacatacata--------tattagtagta--aacatatatatgtttatatattatatatatttatatataatatatatag s panTro4.chr4 21463659 108 + 193495092 aaatatatatgtacacacatatattagtagtaca--tacatacatacatacatatattagtagta--aacatatatatgtttatatattatatat--ttatatataatatata--G i panTro4.chr4 C 0 C 0 s calJac3.chr3 21194733 100 - 190850796 AAATATATATACACATACACACACTCTCTGTGTA---AGATAATTT--------TGTTACTAAT---AACATTTAGAC-TTAACATTTAATATACAATATTAAATGGTGTTCAAA- i calJac3.chr3 I 65 C 0 s mm10.chr5 49178200 75 + 151834684 AAGTCCTCA-----GCACACATACCAGGAATACAGCTTCAGATAAA--------GATGAGTGG-------ATATGATCATGAATCTGCCATATGG--------------------- i mm10.chr5 I 2 C 0 s canFam3.chr3 3777247 69 - 91889043 ------------------AAGCATTCTGTAGGCA--GTGAGCCATA--------AACCTTTCGTGTCAGCATATCTCTCAGTATACACTACAAGTAT------------------- i canFam3.chr3 C 0 C 0 e chlSab2.chr27 19841350 60 - 48547382 I e macFas5.chr5 20758857 0 + 189454096 C e rheMac3.chr5 16717649 275 + 184069350 M e papAnu2.chr5 16354823 0 + 178775436 C e nomLeu3.chr20 20251151 0 - 85365473 C e ponAbe2.chr4 21638950 46 + 198332218 I a score=1888.000000 s hg38.chr4_KI270790v1_alt 75611 20 + 220246 gtagtaaaaa--------atatatatat s panTro4.chr4 21463767 20 + 193495092 GTAGtaaaat--------ataaatatat i panTro4.chr4 C 0 C 0 s macFas5.chr5 20758857 20 + 189454096 gtagtaaaat--------atatatatac i macFas5.chr5 C 0 C 0 s calJac3.chr3 21194833 28 - 190850796 ATGACAAAATGATATCTGATATGTGTAT i calJac3.chr3 C 0 I 45 s mm10.chr5 49178275 9 + 151834684 ---GCAATAT--------AT-------- i mm10.chr5 C 0 C 0 s canFam3.chr3 3777316 20 - 91889043 ACAGGGAAGA--------ATGTACCAGC i canFam3.chr3 C 0 C 0 e chlSab2.chr27 19841350 60 - 48547382 I e rheMac3.chr5 16717649 275 + 184069350 M e papAnu2.chr5 16354823 0 + 178775436 C e nomLeu3.chr20 20251151 0 - 85365473 C e ponAbe2.chr4 21638950 46 + 198332218 I a score=-1224.000000 s hg38.chr4_KI270790v1_alt 75631 6 + 220246 tttact-------- s panTro4.chr4 21463787 6 + 193495092 tttact-------- i panTro4.chr4 C 0 C 0 s mm10.chr5 49178284 6 + 151834684 TTCTCC-------- i mm10.chr5 C 0 C 0 s canFam3.chr3 3777336 13 - 91889043 -TTATGAACATGCC i canFam3.chr3 C 0 C 0 e chlSab2.chr27 19841350 60 - 48547382 I e macFas5.chr5 20758877 0 + 189454096 C e rheMac3.chr5 16717649 275 + 184069350 M e calJac3.chr3 21194861 45 - 190850796 I e papAnu2.chr5 16354823 0 + 178775436 C e nomLeu3.chr20 20251151 0 - 85365473 C e ponAbe2.chr4 21638950 46 + 198332218 I a score=-51.000000 s hg38.chr4_KI270790v1_alt 75637 4 + 220246 atgt s panTro4.chr4 21463793 4 + 193495092 atgt i panTro4.chr4 C 0 C 0 s papAnu2.chr5 16354823 4 + 178775436 atgt i papAnu2.chr5 C 0 C 0 s mm10.chr5 49178290 2 + 151834684 -AG- i mm10.chr5 C 0 C 0 s canFam3.chr3 3777349 4 - 91889043 ACGT i canFam3.chr3 C 0 C 0 e chlSab2.chr27 19841350 60 - 48547382 I e macFas5.chr5 20758877 0 + 189454096 C e rheMac3.chr5 16717649 275 + 184069350 M e calJac3.chr3 21194861 45 - 190850796 I e nomLeu3.chr20 20251151 0 - 85365473 C e ponAbe2.chr4 21638950 46 + 198332218 I a score=-419.000000 s hg38.chr4_KI270790v1_alt 75641 5 + 220246 -agtaa s panTro4.chr4 21463797 3 + 193495092 -agt-- i panTro4.chr4 C 0 C 0 s papAnu2.chr5 16354827 5 + 178775436 -agtaa i papAnu2.chr5 C 0 C 0 s calJac3.chr3 21194906 5 - 190850796 -GATAA i calJac3.chr3 I 45 C 0 s canFam3.chr3 3777353 6 - 91889043 GGCTGA i canFam3.chr3 C 0 C 0 e mm10.chr5 49178292 0 + 151834684 C e chlSab2.chr27 19841350 60 - 48547382 I e macFas5.chr5 20758877 0 + 189454096 C e rheMac3.chr5 16717649 275 + 184069350 M e nomLeu3.chr20 20251151 0 - 85365473 C e ponAbe2.chr4 21638950 46 + 198332218 I a score=-10756.000000 s hg38.chr4_KI270790v1_alt 75646 26 + 220246 tatatatattt----------tactatgtagtaata s panTro4.chr4 21463800 26 + 193495092 tatatatattt----------taCTATGTAGTAATA i panTro4.chr4 C 0 C 0 s nomLeu3.chr20 20251151 26 - 85365473 tatatatattt----------tactatttagcaata i nomLeu3.chr20 C 0 C 0 s macFas5.chr5 20758877 11 + 189454096 -------------------------acacacacaca i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16354832 20 + 178775436 aatatata----------------tacacacacaca i papAnu2.chr5 C 0 C 0 s calJac3.chr3 21194911 31 - 190850796 --TGTATAATTAC---AGAAATCATAACCATGCAAA i calJac3.chr3 C 0 C 0 s mm10.chr5 49178292 17 + 151834684 -------------------CCCACTACACAATGATA i mm10.chr5 C 0 I 40 s canFam3.chr3 3777359 32 - 91889043 ----TTTGTTTCCTTGAGATCAACCACGGAGTGGTA i canFam3.chr3 C 0 C 0 e chlSab2.chr27 19841350 60 - 48547382 I e rheMac3.chr5 16717649 275 + 184069350 M e ponAbe2.chr4 21638950 46 + 198332218 I a score=6011.000000 s hg38.chr4_KI270790v1_alt 75672 9 + 220246 tatatatac s panTro4.chr4 21463826 9 + 193495092 TATATacac i panTro4.chr4 C 0 C 0 s nomLeu3.chr20 20251177 9 - 85365473 tatatatac i nomLeu3.chr20 C 0 C 0 s macFas5.chr5 20758888 9 + 189454096 catacatac i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16354852 9 + 178775436 cacacatac i papAnu2.chr5 C 0 C 0 s calJac3.chr3 21194942 7 - 190850796 TATATAT-- i calJac3.chr3 C 0 C 0 e mm10.chr5 49178309 40 + 151834684 I e chlSab2.chr27 19841350 60 - 48547382 I e rheMac3.chr5 16717649 275 + 184069350 M e canFam3.chr3 3777391 0 - 91889043 C e ponAbe2.chr4 21638950 46 + 198332218 I a score=11526.000000 s hg38.chr4_KI270790v1_alt 75681 8 + 220246 acacacac s panTro4.chr4 21463835 8 + 193495092 acacacac i panTro4.chr4 C 0 C 0 s nomLeu3.chr20 20251186 8 - 85365473 acacacac i nomLeu3.chr20 C 0 C 0 s macFas5.chr5 20758897 8 + 189454096 acacacac i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16354861 8 + 178775436 acacacac i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19841410 8 - 48547382 acacacac i chlSab2.chr27 I 60 C 0 s calJac3.chr3 21194949 2 - 190850796 ------AC i calJac3.chr3 C 0 C 0 e mm10.chr5 49178309 40 + 151834684 I e rheMac3.chr5 16717649 275 + 184069350 M e canFam3.chr3 3777391 0 - 91889043 C e ponAbe2.chr4 21638950 46 + 198332218 I a score=109738.000000 s hg38.chr4_KI270790v1_alt 75689 66 + 220246 a--tatacacacacacCAATGCCTCTGTTTAATTAAGATAATTTTGTTACTAATAACA-TTAGACTTAA------- s panTro4.chr4 21463843 68 + 193495092 acatatacacacacacCAATGCCTCTGTTTAATTAAGATAATTTTGTTACTAATAACA-TTAGACTTAA------- i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21638996 66 + 198332218 --ATACACACACACACCAATGCCTCTGTTTAATTAAGACAATTTTGTTACTAATAACA-TTAGACTTAA------- i ponAbe2.chr4 I 46 C 0 s nomLeu3.chr20 20251194 66 - 85365473 --acatacacacacacCAATGCCTCTATTTAATTAAGATAATTTTGTTACTAATAACA-TCAGACTTAA------- i nomLeu3.chr20 C 0 C 0 s macFas5.chr5 20758905 67 + 189454096 --atatacactcacacCAATGCTGCTGTTCAATTAAGATAATTTTGTTACTAATAATATTTAGACTTAA------- i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16354869 67 + 178775436 --atatacactcacaccAATGCTGCTGTTCAATTAAGATAATTTTGTTACTAATAATATTTAGACTTAA------- i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19841418 67 - 48547382 --atacacacTCACACCAATGCCGCTGTTCAATTAAGATAATTTTGTTACTAATAACATTTAGACTTAA------- i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21194951 55 - 190850796 --ATGTACATACACa-----------atttaattaatataattttgttactaataaat-ataaatttaa------- i calJac3.chr3 C 0 M 513 s canFam3.chr3 3777391 39 - 91889043 ---------------------------------AGACATCATCTTGATCTTGATC----TAAGGCATAAATCATAG i canFam3.chr3 C 0 C 0 e mm10.chr5 49178309 40 + 151834684 I e rheMac3.chr5 16717649 275 + 184069350 M a score=10535.000000 s hg38.chr4_KI270790v1_alt 75755 7 + 220246 ---CAAATAG s panTro4.chr4 21463911 7 + 193495092 ---CAAATAG i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21639062 7 + 198332218 ---CAAATAG i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20251260 7 - 85365473 ---CAAATAG i nomLeu3.chr20 C 0 C 0 s macFas5.chr5 20758972 7 + 189454096 ---CAAATAG i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16354936 7 + 178775436 ---CAAATAG i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19841485 7 - 48547382 ---CAAATAG i chlSab2.chr27 C 0 C 0 s canFam3.chr3 3777430 7 - 91889043 TTGTAAG--- i canFam3.chr3 C 0 C 0 e mm10.chr5 49178309 40 + 151834684 I e rheMac3.chr5 16717649 275 + 184069350 M e calJac3.chr3 21195006 513 - 190850796 M a score=81498.000000 s hg38.chr4_KI270790v1_alt 75762 44 + 220246 AAGTTTTGCATAATGTAATGATCA-CCTGATAACCATG-AAAATCA s panTro4.chr4 21463918 44 + 193495092 AAGTTTCGCATAATGTAATGATCA-CCCGATAACCATG-AAAATCA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21639069 44 + 198332218 AAGTTTCCTATAATGCAATGATCA-CCTGAAAACCATG-AAAATCA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20251267 44 - 85365473 AAGTTTCCTATAATGTAATGATCA-CCTGATAACCATG-AAAATCA i nomLeu3.chr20 C 0 C 0 s macFas5.chr5 20758979 45 + 189454096 AAGTTTCCCATAATGTAATTATCAGCCTGATAACCATG-AAGATCA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16354943 45 + 178775436 AAGTTTCCCATAATGTAATTATCAGCCTGATAACCATG-AAGATCA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19841492 45 - 48547382 AAGTTTCCCATAATGTAATTATCAGCCTGATAACCATG-AAGATCA i chlSab2.chr27 C 0 C 0 s mm10.chr5 49178349 45 + 151834684 AGATTCTGCCTATAAAAATGATTTCTCCAATATCCATG-AATTTCA i mm10.chr5 I 40 C 0 s canFam3.chr3 3777437 41 - 91889043 AAGTTGTCTATAACA-----ATTACTCTGATAAACCTGAAAAATCA i canFam3.chr3 C 0 C 0 e rheMac3.chr5 16717649 275 + 184069350 M e calJac3.chr3 21195006 513 - 190850796 M a score=131645.000000 s hg38.chr4_KI270790v1_alt 75806 48 + 220246 ATTGG----TAAAACCAATGGTAAATATGTAAAAATCTGGGCTAGTACTATA s panTro4.chr4 21463962 48 + 193495092 ATTGG----TAAAACCAATGGTAAATATGTAAAAATCTGGGCTAGTACTATA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21639113 48 + 198332218 ACTGG----CAAAACTAATGGTAAATATGTAAAAATCTGGGCTAGTACTATA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20251311 48 - 85365473 GTTGG----TAAAACTAATGTTAAATATGTAAAAATCTGGGCTAGTACTATA i nomLeu3.chr20 C 0 C 0 s macFas5.chr5 20759024 48 + 189454096 ACTGG----TAAAACTAATGGTAAATATGTAAAAATCTGGGCTAGTACTATA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16354988 48 + 178775436 ACTGG----TAAAACTAATGGTAAATATGTAAAAATCTGGGCTAGTACTATA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19841537 52 - 48547382 ACTGGTAAATAAAACTAATGGTAAATATGTAAAAATCTGGGCTAGTACTATA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21195519 47 - 190850796 ACTGG----T-AAACTAATGGTAAATGGTTAAAAATCTGTGCTAGTACCATA i calJac3.chr3 M 513 I 2168 s mm10.chr5 49178394 47 + 151834684 GCTGA----TAAAAATATAATTATCTGTTTAAATATATGGATTATGAC-ACA i mm10.chr5 C 0 I 1 s canFam3.chr3 3777478 48 - 91889043 TTTGG----CAAAACCAAGGGTAAATGTTTAGAAATATGGACTAGTGCTACA i canFam3.chr3 C 0 C 0 e rheMac3.chr5 16717649 275 + 184069350 M a score=4475.000000 s hg38.chr4_KI270790v1_alt 75854 3 + 220246 GCT s panTro4.chr4 21464010 3 + 193495092 GCT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21639161 3 + 198332218 GCT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20251359 3 - 85365473 GCT i nomLeu3.chr20 C 0 C 0 s macFas5.chr5 20759072 3 + 189454096 GCT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16355036 3 + 178775436 GCT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19841589 3 - 48547382 GCT i chlSab2.chr27 C 0 C 0 s mm10.chr5 49178442 3 + 151834684 GAA i mm10.chr5 I 1 C 0 s canFam3.chr3 3777526 3 - 91889043 GAA i canFam3.chr3 C 0 C 0 e rheMac3.chr5 16717649 275 + 184069350 M e calJac3.chr3 21195566 2168 - 190850796 I a score=104902.000000 s hg38.chr4_KI270790v1_alt 75857 35 + 220246 AGAAAGGCTA-----Tagtggtactctatgttggatgcca s panTro4.chr4 21464013 35 + 193495092 AGAAAGGCTA-----Tagtggtactctatgttggatgcca i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21639164 35 + 198332218 AGAAAGGCTA-----Tagtggtactctatgttggatgcca i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20251362 35 - 85365473 AGAAAGGCTA-----TAGTGGTACTCTATGTTGGATGCCA i nomLeu3.chr20 C 0 C 0 s macFas5.chr5 20759075 35 + 189454096 AGAAAGGCTA-----TAGTGGTACTCTATGTTGGATGCCC i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16355039 35 + 178775436 AGAAAGGCTA-----TAGTGGTATTCTATGTTGGATGCCC i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19841592 35 - 48547382 AGAAAGGCTA-----TAGTGGTACTCTATGTTGGATGCCC i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21197734 35 - 190850796 agaaagGCTA-----Tagtggtactctgtgttgaatgtca i calJac3.chr3 I 2168 C 0 s mm10.chr5 49178445 35 + 151834684 AGAAGCAGGT-----TAGTGGTACTTAGTGTTGAACATTA i mm10.chr5 C 0 I 3 s canFam3.chr3 3777529 40 - 91889043 AGAGTGCCTATAGATTagtggtgctcaatgctggatccta i canFam3.chr3 C 0 C 0 e rheMac3.chr5 16717649 275 + 184069350 M a score=3773758.000000 s hg38.chr4_KI270790v1_alt 75892 1042 + 220246 ctatctttccttagggaacttttaaaataataccaatgtcttggttacaaaccaattTTAATGAGTGGCTAGTGCTGAGTATCACTAACCTTATTTATGAAATTTTATAAAAAGGCCAATCAGAGGAGG----TAAATACCGTATGTCTTTAACATTCCAAATTAATCACTACTCA-CA-ATAGCTTAGACA------TAAAATATGTAG-AAAGTCCATAAGATTCTCTTTGACTGAAAGGAAGCCATAATGGAAA--------------------------TGGA----------------CATATAAGCAAAATCCTTTTATACTGTATTGCTATGATCACTATGTCAATATTTCATTTCCTACAGAGTTTCC-----TATTTAC------TTGGCACTTAAAGAAGAAG--------------------------------GAGATCACTCTTCTCTTTCCTTCAAGTCAA----ATGGCCAGGGAATATGGAACCATGGGGGAATTTAGG----AGGAGTACAGGTTGAGTTTTAGGGAAAATGGGAAGCTGCTTCTTGGCATCCTTCTTCATCAGAGGAACAATAAATGCTCTCATCTA-AAGTCCTTTTCCTACTCTCAATTTCCCCATGGACTACCTTGTCGCTGGAGCCTCATTGACTCAGAATAATTGGATATGGCCTTTTCTGTAATGAATTGGCTGCTATCATGATAACCACTGCATAAATACCTAATGAAATGAGAG----CTGTCTCCTCCATGCCCAGCCAAGCTGGTTGCCTCCAGGCCAAGAGAACATCCTAGAGGAAACTGCACAGACTGCGTG---TCTTCTGCAGAAGTTCAAGTTAACGAAGTTTCAAACTAATGGCA-TTTTTTTCCACAACCAATCTCAACGGCGAACGGCTTTAGCAAGGATGCTTGCTGGAGTCTGGAATTTGACTAATGAAACACTCATTAGCCATCTCCTTCAGGGTTTATC-ATGTTTAAGGCTACCTCACCAATGAGGCAACTGGAATACAATCAAAGTCTAAATGGA-------------------AAGTAGAA-ATTGAAGTTCAC---TTTTTCTGGTCAAGAGATTCACACTGAATATTTTCTATTTATAAATAAGGCAATGGTATG--ATTTCTTGTAAGAGACTAGT-TGTCTTCTAAA s panTro4.chr4 21464048 1042 + 193495092 ctatctttccttagggaacttttaaaataataccaatgtcttggttacaaaccaattTTAATGAGTGGCTAGTGCTGAGTATCACTAACCTTATTTATGAAATTTTATAAAAAGGCCAATCGGAGGAGG----TAAATACCATATGTCTTTAACATTCCAAATTAATCACTACTCA-CA-ATAGCTTAGACA------TAAAATATGTAG-AAAGTCTATAAGATTCTCTTTGACTGAAAGGAAGCCATAATGGAAA--------------------------TGGA----------------CATATAAGCAAAATCATTTTATACTGTATTGCTATGATCACTATGTCAATATTTCATTTCCTACAGAGTTTCC-----TATTTAC------TTGGCACTTCAAGAAGAAG--------------------------------GAGATCACTCTTCTCTTTCCTTCAAGTCAA----ACGGCCAGGGAATATGGAGCCATGGGGGAATTTAGG----AGGAGTACAGGTTGCATTTTAGGGAAAATGGGAAGCTGCTTCTTGGCATCCGTCTTCATCAGAGGAACAATAAATGCTCTCATCTA-AAGTCCTTTTCCTACTCTCAATTTTCCCATGGACTACCTTGTCACTGGAGCCTCATTGACTCAGAATAATTGGATATGTCCTGTTCTGTAATGAGTTGGCTGCTATCATGATAACCACTGCATAAATACCTAATGAAATGAGAG----CTGTCTCCTCCATGCCCAGCCAAGCTGGTTGCCTCCAGGCCAAGAGAACATCCTAGAGGAAACTGCACAGACTGCGTG---TCTTCTGCAGAAGTTCAAGTTAATAAAGTTTCAAACTAATGGCA-TTTTCTTCCACAACCAATCTCAACGGCGAACGGCTTTAGCAAGGATGCTTGCTGGAGTCTGGAATTTGACTAATGAAACACTCATTAGCCATCTCCTTCAGGGTTTATC-ATGTTTAAGACTACCTCACCAATGAGGCAGCTGGAATACAATCAAAGTCTAAATGGA-------------------AAGTAGAA-ATTGAAGTTCAC---TTTTTCTGGTCAAGAGATTCACACTGAATATTTTCGATTTATAAATAAGGCAATGGTATG--ATTTCTTGTAAGAGATTAGT-TGTCTTCTAAA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21639199 1041 + 198332218 ctatctttccttagggaacttttaaaataataccaatgtcttggttacaaaccaattTTAATGAGTAGCTAGTGCTGAGTATCACTAACCTTATTTATGAAATTTTATAAAAAGGCCAATCGGA-GAGG----TAAATACCATATGTCTTTAACATTCCAAATTAATCACTACTCA-CC-ATAGCTTAGACA------TAAAATATGTAG-AAAGTCCATAAGATTCTCTTTGACTGAAAGGAAGCCATAATGGAAA--------------------------TGGA----------------CATATAAGCAAAATCCTTTTATACTGTATTGCTATGATCACTATGTCAATATTTCATTTCCTACAGAGTTTCC-----TATTTAC------TTGGCACTTAAAGAAGAAG--------------------------------GAAATCACTCTTCTCTTTCCTTCAAGTCAA----ATGGCCAGGGAATATGGAGCCATGGGGGAATTTAGG----AGGAGTACAGGTTGCGTTTTAGGGAAAATGGAAAGCTGCTTCTTGGCATCCTTCTTCATCAGAGGAACAATAAATGCTTTCATCTA-AAGTCCTTTTCCTACTCTCAATTTCCCCATGGACTACCTTGTCGCTGGAGCCTCATTGACTCATAATAATTGGATATGCCCTGTTCTGTAATGAGTTGGCTGCTATCATGATAACCACTGCATAAATACCTAATGAAATGAGAG----CTGTCTCCTCCATGCCCAGCCAAGCTGGTTGCCTCCTGGCCAAGAGAACATCCTAGAGGAAACTGCACAGACTGCGTG---TTTTCTGCAGAAGTTCAAGTTAATAAAGTTTCAAACTAATGGCA-TTTTTTTCCACAACCAATCTCAAGGGCGAACGGCTTTAGCAAGGATGCTTGCTGGAGTCTGGAATTTGACTAATGAAACACTCATTAGCCATCTCCTTCAGGGTTTATC-ATGTTTAAGACTACCTCACCAATGAGGCAACTGGAATACAATCAAAGTCTAAATGGA-------------------AAGTAGAA-ATTGAAGTTCAC---CTTTTCTGGTCAAGAGATTCACACTGAATATTTTCTATTTATAAATAAGGCAATGGTATG--ATTTCTTGTAAGAGATTAGT-TGTCTTCTAAA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20251397 1041 - 85365473 CTATCTTTCCTTAGGGAACTTTTAAAATAATACCAATGTCTTGGTTACAAACCAATTTTAATGAGTCGCTAGTGCTGAGTATCACTAACCTCAAATATGAAATTTTATAAAAAGGCCAATCGGAGGAGG----TAAATACTATATGTCTTTAACATTCCAAATTAATCACTACTCA-CA-ATAGCTTAGACA------TAAAATATGTAG-AAAATCCATAAGATTCTCTTTGACTGAAAGGAAGCCATAATGGAAA--------------------------TGGA----------------CATATAAGCAAAATCCTTTTATACTGTATTGCTATGATCACTATGTCAATATTTCATTTCCTACAGAGTTTCC-----TATTTAC------TTGGCACTTAAAGAAGAAG--------------------------------GAGATCACTCTTCTCTTTCTTTCAAGTCAA----ATGGCCAGGGAATATGGAGCCATGGGGGAATTTAGG----AGGAGTACAGGTTGCGTTTTAGGGAAAATGGAAAGCTGCTTCTTGTCATCCTTCTTCATCAGAGGAACAATAAATGCTCTCATCTA-AAGTCCTTTTCCTACTCTCAGTTTCCCCATGGACTACCTTGTCGCTGGAGCCTCATTGACTCAGAATAATTGAATATGGCCTGTTCTGTAATGAGTTGGCTGCTATCATGATAACCACTGCATAAACACCTAATGAAATGAGAG----CTGTCTCCTCCATGCCCAGCCAAGCTGGTTGCCTCCTGGCCAAGAGAACATCCTAGAGGAAACTGCACAGACTGAGTG---TCTTCTGCAGAAGTTCAAGTTAATAAAGTTTCAAACTAATGGCA-TTTTTTTCCACAACCAATCTCAAGGGC-AACAGCTTTAGCAAGGATGCTTGCTGGAGTCTGGAATTTGACTAATGAAACACTCATTAGCCATCTCCTTCAGGGTTTATC-ATGTTTAAGACTACCTCACCAATGAGGCAACTGGAATACAATCAAAGTCTAAATGGA-------------------AAGTAGAA-ATTGAAATTCAC---TTTTTCTGGTCAAGAGATTCACACTGAATATTTTCTATTTATAAATAAGGCAATGGTATG--ATTTCTTGTAAGAGATTAGT-TGTCTTCTAAA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16717925 1022 + 184069350 CTATCTTTCCTTAGGGAACTTTTAAAATAATACCAATGTCTTGGTTACAAACCAATTTTAATGAGTGGCTAGTGCTGAGTATCACTAACCTCATACATGAAATTTTATAAAAAGGCCAGTTGGAGGAGT----TAAATACTATATGTCTTTAACATTCCAAATTAATCACTACTCA-CA-ATAGCTTAGACA------TAAAATATGCAG-AAAATCCGTAAGATTCTCTTTGACGGAAAGGTAGCCGTAATGGAAA--------------------------TGGA----------------CATATAAGTAAAATCATTTTATACAGTATTGCTATGATCACTATGTCAATATTTCATTTCCTACAGAGATTCC-----TATTTAC------TTGGCACTTAAAGAAGAAG--------------------------------GAGATCACTCTTCTCTTTCCTTCTAGTCAA----ATGGCCAGGAAATACGGAGCCATGGGGGAATTTAGG----AGGGGTACA--------------------GGAAAGCTTCTTCTTGGCATCCTTCTTCATCAGAGGAACAATAAATGGTCTCATCTA-AAGTCCTTTTCCTACTCTCAATTTCCCCATGGACTACCTTGTCGCTGGAGTCTCATTGACTCAGAATAATTGGATATGGCCTGTTCTGTAATGAGTTGGCTGCCATCATGATAACCATTGCATAAATACCTAATGAAATGAGAG----CTGTCTCCTCCATGCCCAGCCAAGCTGGTTGCCTCCCGGCCAAGACAACATCCTAGAGGAAACGGCACAGACTGCATG---TCTTCTGCAGAAGTTCAAGTTAATAAAGTTTCAAACTAATGGCATTTTTTTTCCACAACCAATCTCAAGGGC-GATGACATTAACAGGGATGCTTGCTGGAGTCTAGAATTTGACTAATGAAATATTCATTAGCCATCTCCTTCAGGGTTTATC-ATGTTTAAGACTACCTCATCAGTGAGGCAATAGGAATAAAATCAAAGGCTAAATGGA-------------------AAGTAGAA-ATTGAAGTTCAC---TTTTTCTGGTCAAGAGATTCACACTGAATATTTTCTATTTATAAATAAAGCAATGGTATG--ATTCCTTGTAAGAGAGTAGT-TGTCTACTAAA i rheMac3.chr5 M 275 C 0 s macFas5.chr5 20759110 1022 + 189454096 CTATCTTTCCTTAGGGAACTTTTAAAATAATACCAATGTCTTGGTTACAAACCAATTTTAATGAGTGGCTAGTGCTGAGTATCACTAACCTCATACATGAAATTTTATAAAAAGGCCAGTTGGAGGAGT----TAAATACTATATGTCTTTAACATTCCAAATTAATCACTACTCA-CA-ATAGCTTAGACA------TAAAATATGCAG-AAAATCCGTAAGATTCTCTTTGACGGAAAGGTAGCCGTAATGGAAA--------------------------TGGA----------------CATAAAAGTAAAATCATTTTATACAGTATTGCTATGATCACTATGTCAATATTTCATTTCCTACAGAGATTCC-----TATTTAC------TTGGCACTTAAAGAAGAAG--------------------------------GAGATCACTCTTCTCTTTCCTTCAAGTCAA----ATGGCCAGGAAATACGGAGCCATGGGGGAATTTAGG----AGGGGTACA--------------------GGAAAGCTTCTTCTTGGCATCCTTCTTCATCAGAGGAACAATAAATGGTCTCATCTA-AAGTCCTTTTCCTACTCTCAATTTCCCCATGGACTACCTTGTCGCTGGAGTCTCATTGACTCAGAATAATTGGATATGGCCTGTTCTGTAATGAGTTGGCTGCCATCATGATAACCATTGCATAAATACCTAATGAAATGAGAG----CTGTCTCCTCCATGCCCAGCCAAGCTGGTTGCCTCCCGGCCAAGACAACATCCTAGAGGAAACGGCACAGACTGCATG---TCTTCTGCAGAAGTTCAAGTTAATAAAGTTTCAAACTAATGGCATTTTTTTTCCACAACCAATCTCAAGGGC-GATGACATTAACAGGGATGCTTGCTGGAGTCTAGAATTTGACTAATGAAATACTCATTAGCCATCTCCTTCAGGGTTTATC-ATGTTTAAGACTACCTCATCAGTGAGGCAATAGGAATAAAATCAAAGGCTAAATGGA-------------------AAGTAGAA-ATTGAAGTTCAC---TTTTTCTGGTCAAGAGATTCACACTGAATATTTTCTATTTATAAATAAAGCAATGGTATG--ATTCCTTGTAAGAGAGTAGT-TGTCTACTAAA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16355074 1028 + 178775436 CTATCTTTCCGTagggaacttttaaaataataccaatGTCTTGGTTACAAACCAATTTTAATGAGTGGCTAGTGCTGAGTATCACTAACCTCATacatgaaattttataaaaaggcCAGTTGGAGGAGT----TAAATACCATATGTCTTTAACATTCCAAATTAATCACTACTCA-CA-ATAGCTTAGACATATGcttaaaatatgtag-aaaatccgTAAGATTCTCTTTGACTGAAAGGTAGCCATAATGGAAA--------------------------TGGA----------------CATATAAGTAAAATCATTTTATACAGTATTGCTATGATCACTATGTCAATATTTCATTTCCTACAGAGATTCC-----TATTTAC------TTGGCACTTAAAGAAGAAG--------------------------------GAGAtcactcttctctttccttcaagTCAA----ATGGCCAGGAAATACGGAGCCATGGGGGAATTTAGG----AGGGGTACA--------------------GGAAAGCTTCTTCTTGGCATCCTTCTTCATCAGAGGAACAATAAATGGTCTCATCTA-AAGTCCTTTTCCTACTCTCAATTTCCCCATGGACTACCTTGTCGCTGGAGTCTCATTGACTCAGAATAATTGGATATGGCCTGTTCTGTAATGAGTTGGCTGCCATCATGATAACCATTGCATAAATACCTAATGAAATGAGAG----CTGTCtcctccatgcccagccaagcTGGTTGCCTCCCGGCCAAGACAACATCCTAGAGGAACCTGCACAGACTGCATG---TCTTCTGCAGAAGTTCAAGTTAATAAAGTTTCAAActaatggcattttttttccaCAACCAATCTCAAGGGC-GATGACATTAACAGGGATGCTTGCTGGAGTCTAGAATTTGACTAATGAAATACTCATTAGCCATCTCCTTCAGGGTTTATC-ATGTTTAAGACTACCTCATCAGTGAGGCAATAGGAATAAAATCAAAGGCTAAATGGA-------------------AAGTAGAA-ATTGAAGTTCAC---TTTTTCTGGTCAAGAGATTCAcactgaatattttctatttataaataaagCAATGGTATG--ATTCCTTGTAAGAGAGTAGT-TGTCTACTAAA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19841627 1022 - 48547382 CTATCTTTCCTTAGGGAACTTTTAAAATAATACCAACGTCTTGGTTACAAACCAATTTTAATGAGTGACTAGTGCTGAGTATCACTAACCTCATACATGAAATTTTATAAAAAGGCCAGTTGGAGGAGT----TAAATACTATATGTCTTTAACATTCCAAATTAATCACTACTCA-CA-ATAGCTTTGACA------TAAAATATGTAG-AAAATCCATAAGATTCTCTTTGACTGAAAGGTAGCCGTAATGGAAA--------------------------TGGA----------------CATATAAGTAAAATGATTTTATACAGTATTGCTATGATCACTATGTCAATATTTTATTTCCTACAGAGCTTCC-----TATTTAC------TTGGCACTTAAAGAAGAAG--------------------------------GAGATCACTCTTCTCTTTCCTTCAAGTCAA----ATGGCCAGGAAATACGGAGCCATGGGGGAATTTAGG----AGGGGTACA--------------------GGAAAGCTTCTTCTTGGCATCCTTCTTCATCAGAGGAACAATAAATGGTCTCATCTA-AAGTCCTTTTCCTACTCTCAATTTCCCCATGGACTACCTTGTCGCTGGAGTCTCATTGACTCAGAATAATTGGATATGGCCTGTTCTGTAATGAGTTGGCTGCCATCATGATAACCATTGCATAAATACCTAATGAAATGAGAG----CTGTCTCCTCCATGCCCAGCCAAGCTGGTTGCCTCCCGGCCAAGAGAACATCCTAGAGGAAACGGCACAGACTGCATG---TCTTCTGCAGAAGTTCAAGTTAATAAAGTTCCAAACTAATGGCATTTTTTTTCCACAACCAATCTCAAGGGC-GATGACATTAACAGGGATGCTTGCTGGAGTCTAGAATTTGACTAATGAAACACTCATTAGTCATCTCCTTCAGGGTTTATC-ATGTTTAAGACTACCTCACCAGCGAGGCAACTGGAATAAAATCAAAGGCTAAATGGA-------------------AAGTAGAA-ATTGAAGTTCAC---TTTTTCTGGTCAAGAGATTCACACTGAATATTTTCTATTTATAAATAAGGCAATGGTATG--ATTCCTTGTAAGAGAATAGT-TGTCTACTAAA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21197769 1035 - 190850796 ttatctttccctaggaaacttttaaaataataccaatgacttggttacaaaccaattttaatgagttgctagtgctgagaatcaCCAACCTTATATGTAAAGCTTTATAAAAAGGCCAATTTGAGAAGG----TAAATGCTATAGGTCCTTAACCTTCCAAATTAATCACTACTTA-CA-ATAGCTTAGACA------TAAAATATATAGCAAAATCCATAAGATTCCCTTTGACTGAAAGGAAACCATAATGGAAA--------------------------TGGA----------------CACATAAGCAAAATACTTTTATACA-TATCACTATGATCACTATGTCAATACTTCATTTCCTACAGAGTGTCC-----TATTTAC------TTGGCACTTAAAAAAGAAT-----------------------------------ATCACTCTTCTCTTTTCTTCAAGTCAA----ACGGCCGAGGAATGTGGAACCATTGGCGAATTTAGG----AGGGGTACAGGTTGAGTTTTAGGGACAATGGAAAGCTGCTTCTTGGCATC---CTTCATCAGAGGAACAATAAATGCTCTCATCTA-AAGTTCTTTTCCTACTCTCAATTTCCCCATGGACTACCTTGTCGCAGGAGCCTCATTGACTCAGAATAATTGGATATGGCCTGTTCTGTAATGAGTTGGCTGCTATCATGATAACCATTGCATAAATACCTAATGAAATGAGAG----CTGTCTCCTCCATGCCTAGCCAAGCTTGTTGCCTCCCGGCCAACAGAACATTGTAGAGGAAACGGCACAGACTGCGTG---TCTTCTGCAAAAGTTCAAGTTAATAAAGTTTCAAACTAAGGGCA--TTTGTTTTGCAACCAATCTCAAGAGC-CATGGCATTAGCAGGGATGCTTGCTGTAGTCTAGAATTTGACTAACGAAACACTCATTAGCCATTTCCTTTGGGGTTTATC-ATGTTTAAGACTACCTCACCAGTTAGGCAACTGGAATAAAATCAAAGTCTAAATGTA-------------------AAGTAGAATCTTGGAGCCTAC---TTTTTCTGGTCAAGAGAATCGTACTGAATATTTTCTATTTATAAATAGGGCAGTGGTATG--ATTTCTTACAAGAGATTAGT-TGTCTTCTAAA i calJac3.chr3 C 0 C 0 s mm10.chr5 49178483 1014 + 151834684 TTTTCATTGCTTCTAGAAATATCAAAGCACTGTTGATATCTTGCTTGTTAAGCAATACAAATGGGTGGGTAGTATTTAAAATTACCAACATTTTATATAACA----AGGGAAAAGTAAGTTAAAGGAGA----TAAATGTTAAGCATCTTTAGCACAACAAGTTAACCACCATCCC-CAGATGACTTTACTA------TGAACTAGATGGCAGAAGCCACAAGATTCTCTTTGCTAGAAAGAAACGTAGTATGGAGA--------------------------AGAA----------------TAT------AGATTTATTCCATGCAGTATCACTGTGAATACCATGGTGATGCCTCTTTTCCCACTAAGAATTC-----CATTTGC------CTGGCTCTTC----AGAAA--------------------------------GTGCTCAACCTCCTCTTTTCATGAGTTTAGTATCCTAGCAAGAGAATAAGAATCCTTTGGGGAATTCAGAGTACAGGGGCATAAGTTGAGTTTCAGGGAAAATTGAGAA-TGCTTCTTGGCCTCCTTCTTCCTTGGAATAATAATAACTGGTCTCATCTGCAAGTCCTTTTCCTACTCCCAATTCCCTGCTGGAATACATT---------TCCTCAGTGACTCAGAATAATTTGGTATTGTCAATTGTGTAATGAGTTAGCTGCTAGCATAATAACCATTGTATAAAATACTAATGAAATGAG-----------------------AGCCAGGCTGGTTACCTCACATCTAGGAGAATACACAGGAAGAAATTAGACAGACTAAGTGACTTCTTTTGCAAGAGGTCTAGTTAACAGAGTATCAAACTTCTGACA---CTTTTTCA-AAATACTCCCAAGAGC-CATGACATTAGCTGGGATGTCTGCTTTAGTGCAGCATTCCACTAATGAAACACTCATTAGCTCTCTCCTTCAAGACATAACTGTATTTAAGGCTCCTTGAGCATTTAGAAATTGAATGTAAAAGCAAAGTGTAAATTAACAAATCTATCTCT---AATAAACAGAA-ATTTGTATTTAT---TTGTTCCAGGCAAGTGAAACCCACT-----------ATTCACAAAT----CATTACTCTTACATTTCTTCTAAGAGACCAGTCTGCCTTAGAAA i mm10.chr5 I 3 I 2434 s canFam3.chr3 3777569 1143 - 91889043 ctagcatctcctgggggacttttaaaacaataccaatgtcctggatgcataccaATTCTAAC-AGTGTCTAATACTAAGGGTCACTAACCTGATCGATGAAA----GGAGAAGAGCCCATCTGAGGAGGCAAATAAATGCTCCATCTCCTCAAGACTCCGAGTTAATCACCACTCATCA-ATGGCTTTAGCA------CATACTGTATGGCAAAATCCATGAGATTCTC--TGACTGAAAAGAAGTTGCAATAGAGAGTGTGAATTCACCTCCTTGTAAACTGTGGAATTCTGGGTTCAAGTGCACATTGGCGCAATCGTGTTGCACAATATCACCACGATCACTATGTCAACACTTCACTCCTTACTGAGGTATCCAGTGCATTTGCACACTTTTTACTCTTAAGAAAGAAGCTCaaaaaaaaataaaagaaaaaaaaagaaagaaGCTCACTCTTCTGTTTCCATAAACTCAC----CAGGCAATGGAATACGGACCCTTTGGAGAACTCAGA----TGGGCTACAGGATGAGTTTAGAGGAAGATGAAAAGGTATTTGTTGGCTTCCCTCTTCCTCAGAGTAACAACAAATGCTCTCCCCTAAAAGTTCTTTCCCTATTTCCAGTTTCCCCTTGGAGTATCTCATCTATGGAGCCTCATTGACTCACAATAATTTGATATGTCCTGTTCTGTAATAAGTTGGCTGCTACCATGATAACCACTGCATAAATACCTAATGAAATGAGAACTATCTGTCTCCACTATTCCCAGCCAGGCTTGTTGCCTCCTAGCCAAGAGAATATCCTGAAGGAAACTGCCTAGACACAGTG---TCTTCTGCAATAGTTCATGTTAATACAATTTTAAATTAAGGACA---TTTTTTCA----TGGTCTCAGGAAC-TATGGCATTAGCAAGGGTGCTTGCTTTTGTCTAGTCTTCTCCTTATGAAGCATTCATTAGTTATGTCCTT-GGGGCTTATC-ACTTTTAAGACTAGCTCATCGAATGGGCAACTAGAATAAAATCAAAGCATAAATGCAGAAAAATATCTCTATCATTAAACAGAA-ATTCAAGTCCACTTTTTTTTCTGGTCAAGAG-CTCACATACAATACTTTTTCTACGC-AGTACGGCAACACTCAG--ACTTCTTCTAAGAGACTGGT-TCTCCTCTAAA i canFam3.chr3 C 0 C 0 a score=1001881.000000 s hg38.chr4_KI270790v1_alt 76934 307 + 220246 ATTGAGACAACTTGAAATGTGATATTTCACATGTGCTTTATCAAATAACATCTTTAGTTA-----TATATAATAGAAATGGACTGGCTGCCTTAAATAG-AAAAACA-ATTAATCGTGTGGATTTTGAAAAGTATAGTGGCTGGATAGAAAGGTCAGGCTTTTAAACTAAAGATGGGAATTAAAGCAGTTCTGAGAATCTAAGTAGCATAAACTCCTCAATAAAGATATTCAATTCAGAATGCAATATCTAGAGTAAATGTGCTACAAATACTTTTCctccagcctcttggtgacaagttgactgaagtaactc s panTro4.chr4 21465090 301 + 193495092 ATTGAGATAACTTGAAATGTGATATTTCACATGTGCTTTATCAAATAACAACTTTAGCTA-----TATATCATAGAAATGGATGGGCTGCCTTAAACAG-AAAAACA-ATTAATTGTGTGGATTTTGAAAAGTACAGTGGCTTGATAGAAAGGCCAGGCTTTTAAACTAAAGATGGGAATTAAGGCAGTTCTGAGAATCTAAGTAGAATAAACTCCTCAATAAAGATA------TCAGAATGCAATATCTAGAGTAAATGCGCTACAAATACTTTTCctccagcctcttggtgacaagttgactgaagtaactc i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21640240 307 + 198332218 ATTGAGATAACTTGAAATGTGATATTTTACATGTGCTTTATCAAATAACATCTTTAGTTA-----TATATCATAGAAATGGACTGGCTGCCTTAAATAG-AAAAACA-ATTAATTGTGTGGATTTTGAAAAGTACAGTGGCTTGATAGAAAGGCCAGGCTTTTAAACTAAAGATGGGAATTAAGGCAGTTCTGAGAATCTAAGTAGCATAAACTCCTCAATAAAGATATTCAATTCAGGATGCAATATCTAGAGTAAATGTGCTACAAATACTTTTCctccagcctcttggtgacaagttgactgaagtaactc i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20252438 301 - 85365473 ATTGAGATAACTTGAAATGTGATATTTCACATGTGCTTTATCAAATAACATCTTTAGTTA-----TATATCATAGAAATGGACTGGCTGTCTTAAATAG-AAAAACA-ATTAATTGTGTGGATTTTGAAAAGTACAGTGGCTTGATAGAAAGGCCAGGCTTTTAAACTAAAGATGAGAATTAAGGCAGTTCTGAGAATCTAAGTAGCATAAACTCCTCAATAAAGATA------TCAGAATGCAATATCTAGAGTAAATGTGCTACAAATACTTTTCctccagcctcttcgtgacaagttgactgaagtaactc i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16718947 302 + 184069350 ATTGAGATAACTTGAAATGTGATATTTCACATGTGCTTTATCAAATAACATCTTTAGTTA-----TATATCATAGAAATGGACTGGCTGTCTTAAATAGAAAAAATG-GTTAATTGTGTGGATTTTGAAAAGTACAGTAACTTGATAGAAAGGCCAGGTTTTAAAACTAAATATAGGAATTAAGGCAGTTCTGAGAATCTAAGTAGCATAAACTCCTCAATAAAGATA------TCAGAATGCAATGTCTGGAGTAAATGTGTTACAAATACTTTTCctccagcctcttggtgacaagttgactgaagtaactc i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20760132 302 + 189454096 ATTGAGATAACTTGAAATGTGATATTTCACATGTGCTTTATCAAATAACATCTTTAGTTA-----TATATCATAGAAATGGACTGGCTGTCTTAAATAGAAAAAATG-GTTAATTGTGTGGATTTTGAAAAGTACAGTAACTTGATAGAAAGGCCAGGTTTTAAAACTAAATATAGGAATTAAGGCAGTTCTGAGAATCTAAGTAGCATAAACTCCTCAATAAAGATA------TCAGAATGCAATGTCTGGAGTAAATGTGTTACAAATACTTTTCCTCCAGCCTCTTGGTGACAAGTTGACTGAAGTAACTC i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16356102 301 + 178775436 ATTGAGATAACTTGAAATGTGATATTTCACATGTGCTTtatcaaataacatttttagttA-----TATATCATAGAAATGGACTGGCTATCTTAAATAG-AAAAATG-GTTAATTGTGTGGATTTTGAAAAGTACAGTAACTTGATAGAAAGGCCAggttttaaaactaaatataggAATTAAGGCAGTTCTGAGAATCTAAGTAGCATAAACTCCTCAATAAAGATA------TCAGAATGCAATGTCTGGAGTAAATGTGTTACAAATACTTTTCCTCCAGCCTCTTGGTGACAAGTTGACTGAAGTAACTC i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19842649 300 - 48547382 ATGGAGATAACTTGAAATGTGATATTTCACATGTGCTTTATCAAATAACATCTTTAGTTA-----TATATCATAGAAATGGACTGGCTGCCTTAAATAG-AAAAATG-A-TAATTGTGTGGATTTTGAAAAGTACAGTGACTTGATAGAAAGGCCAGGTTTTTAAACTAAAGATAGGAATTAAGGCAGTTCTGAGAATCTAAGTAGCATAAACTCCTCAATAAAGATA------TCAGAATGCAATGTCTGGAGTAAATGTGTTACAAATACTTTTCCTCCAGCCTCTTGGTGACAAGTTGACTGAAGTAACTC i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21198804 306 - 190850796 ATTGAGATAACTTGAAATGTGATATTTCACATGTGATTTATCAGATAACATCTTTAGTTACCTATCATATCATAGAAATGGACTGCTTACCTTAAACAG-AAAGGCG-ATTAATTGAGTGGATTTTGAAAAGAACAATGGCTTGATAGAAAGGCCAGGCTTCTAAACTAAAGACAGAAAGTAAGGCAGTTCTGAGAATCTAAGTAGCACAAACTCCTCAATAAAGATA------CCAGAATGCCATACGTGGAGTAAATGTACTACAAATACTTTTCCTCTAGCCTCTTGGTGACAAGTTGACTGAAGTAACCC i calJac3.chr3 C 0 C 0 s canFam3.chr3 3778712 296 - 91889043 ATAGAGAAAAGTCGAAACATGGCATTTCACTTGTGCCTTGCCAGAT---GTCTTTA-CTG-----CGCATCAGAGAAAGAGGCTGGCTACCTTAAATAG-AAAAAGACACTGACTGCCTGGA-TTTGTAGAGTACACTGGTTTGATGCGAACACT-GGCTGCTAAACAAAAGGTGAAAATCAAGGCAATAATCAAAGTCCAAGTATCATAAACCACTTAATGAACTCA------TTAGACTGCCACAGTTGGAAAAAGTGAGCTCCAAATAGTTTCTCCCTCACCTCTTGCTGGCAGGTTGACTGCAGCAGCTC i canFam3.chr3 C 0 I 775 e mm10.chr5 49179497 2434 + 151834684 I a score=1495428.000000 s hg38.chr4_KI270790v1_alt 77241 486 + 220246 tggccttatgttctcccaggttcaaactcagtaggaaagaaagtc----------ctgacaacatcagtgaacgtttccttgggtatcattggctccaaaagtcaggtacttctttccgaagcaa-ttactctgattaaaa-------------ggttg------------ttctttgctcactcctgaaataagaaaaaggacagaatccactccatctgaaactcagagtctaagagttgagaagagatggttctttcaa-----------------agaaattgtcagaatacttgtcacaaaagaagAACACGTAATTCCAT-AAGGC-----AAAAAGAAATGTGTACTGTGCTGCAAAATACAGTCTCC-ACAAAGGTTTAGAGGTAGAAATTAAAAGACAATGAAGggcaaagacgcatattgttcaacagttgt---tcaacattatatgtcgttaaggaagtacaaattaaaaccaaa----------------------------------------------------------------aatggccaaaatccaaaacaccaaaaacaccaaatgctggcaaagatgtggagcagcaggaa s panTro4.chr4 21465391 487 + 193495092 tgaccttatgttctcccaggttcaaattcagttggaaagaaagcc----------ctgataacatcagtgaacgtttccttgggtatcattggctccaaaagtcaggtacttatttctgaagcaa-ttactttgattaaaa-------------gattg------------ttctttgctcacccctgaaataagaaaaaggacagaatccactccatctgaaactcagagtctaagagttgagaagagatggttctttcaa-----------------agaaattgtcagaatacttgtcacaaaagaagAACACGTAATTCCATGAAGGC-----AAAAAGAAATGTGTACTGTGCTGCAAAATACAGTCTCC-ACAAAGGTTTACAGGTAGAAATTAAAAGACAAGGAAGggcaaagacgcatattgttcaacagtttt---tcaacattatatgtcattaagaaagtacaaattaaaaccaaa----------------------------------------------------------------aatggccgaagtctaaaacaccaaaaacaccaaatgctggcaaagatgtggagcagcaggaa i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21640547 487 + 198332218 tgaccttatgttctcccatgttcaaattcagtaggaaaaaaagtc----------ctgataacatcagtgaacgtttccttgggtatcattggctccaaaagtcaggtacttatttctgaagcaa-ttactctgattaaaa-------------gattg------------ttctttgctcacccctgaaataagaaaaagcacagaatccactccatctgaaactcagagtctaagagttgaggagagatggttctttcaa-----------------agaaattgtcagaatacttgtcacaaaagaagAACACGTAATTCCATGAAGGC-----AAAAAGAAATGTGTACTGTGCTGCAAAATATAGTCTCC-ACAAAGGTTTACAGGTAGAAATTAAAAGACAATGAAGggcaaagacgcatattgttcaacagttgt---tcaacattatatgtcattaaggaagtacaaattaaaacaaaa----------------------------------------------------------------catggccaaaatcgaaaacaccaaaaacaccaaatgctggcaaagatgtggagcagcaggaa i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20252739 487 - 85365473 tgaccttatgttctcccaggttcaaattcagtaggaaagaaagtc----------ctgacaatatcagtgaacatttcattgggtatcattggctccaaaagtcaggtacttatttctgaagcaa-ttactctgattaaaa-------------gattg------------ttctttgcttacccctgaaataagaaaaaggacagaattcactccatctgaagctcagagtctaagagttgagaagagatggttctttcaa-----------------agaaattgtcagaatacttgtcacaaaagaagAACACATAATTCCATGAAGAC-----AAAAAGAAATGTGTACTGTGCTGCAAAATATAGTCTCC-ACAAAGGTTTAGAGGTAGCAATTaaaagacaatgaagggcaaagacatatactgttcaaaagttgt---tcaacattatatgtcattaaggaagtacaaattaaaaccaaa----------------------------------------------------------------aatggccaaaatctaaaacaccaaaaacaccaaatgctggcaaagatgtggagcagcaggaa i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16719249 501 + 184069350 tgaccttatgttctcccaggttcaaattcagtaggaacgaaagtc----------ctgacaacatcagtgaacgtttccttgggtatcattggctccaaaagtcaggtacttatttctgaagcaatttattctgattaaaa-------------gattg------------ttctttgctcacccc-gaaataagaaaaaggacagaatccactccatctgaaactcagagtctaagagttgagaacagatggttctttcaaagaaaattgtgatgtccagaaATTGTCAAAATACTTGTCACAAAAGAAGACCACGTAATTCCAGGAAGGC----AAAAAAGAAATGTGTACTGTCCTGCAAAATCTAGTCTCC-ACAAAGGCTTAGAGGTAGAAATTAAAAGACAATGAAGAgcaaagaagcata----tgaacagttgt---tcaacaatatgtgtcattaaggaagtacaaattaaaacccaa----------------------------------------------------------------aatgaccaaaatccaaaacaccaaaaacaccaaacgctggtaaagatgtggagcagcaggaa i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20760434 501 + 189454096 TGACCTTATGTTCTCCCAGGTTCAAATTCAGTAGGAAAGAAAGTC----------CTGACAACATCAGTGAACGTTTCCTTGGGTATCATTGGCTCCAAAAGTCAGGTACTTATTTCTGAAGCAATTTATTCTGATTAAAA-------------GATTG------------TTCTTTGCTCACCCC-GAAATAAGAAAAAGGACAGAATCCACTCCATCTGAAACTCAGAGTCTAAGAGTTGAGAACAGATGGTTCTTTCAAAGAAAATTGTGATGTCCAGAAATTGTCAAAATATTTGTCACAAAAGAAGACCACGTAATTCCAGGAAGGC----AAAAAAGAAATGTGTACTGTCCTGCAAAATCTAGTCTCC-ACAAAGGCTTAGAGGTAGAAATTAAAAGACAATGAAGAgcaaagaagcata----tgaacagttgt---tcaacaatatgtgtcattaaggaagtacaaattaaaacccaa----------------------------------------------------------------aatgaccaaaatccaaaacaccaaaaacaccaaacgctggtaaagatgtggagcagcaggaa i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16356403 501 + 178775436 TGACCTTAtgttctcccaggttcaaattcaGTAGGAAAGAAAGTC----------CTGACAACATCAGTGAACGTTTCCTTGGGTATCATTGGCTCCAAAAGTCAGGTACTTATTTCTGAAGCAATTTATTCTGATTAAAA-------------GATTG------------TTCTTTGCTCACCCC-GAAATAAGAAAAAGGACAGAATCCACTCCATCTGAAACTCAGAGTCTAAGAGTTGAGAACAGATGGTTCTTTCAAAGACAATTGTGATGTCCAGAAAGTGTCAAAATACTTGTCACAAAAGAAGAATACGTAATTCCaggaaggc----aaaaaagaaatgtgtactGTCCTGCAAAATATAGTCACC-ACAAAGGCTTAGAGGTAGAAATTAAAAGACAATGAAGAGCAAAGAAGCATA----TGAACAGTTGT---TCAACAATATGTGTCATTAaggaagtacaaattaaaacccca----------------------------------------------------------------aatgaccaaaatccaaaacaccaaaaacaccaaacGCTGGTAAAGATGTGGAGCAGCAGGAA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19842949 501 - 48547382 TGACCTTATGTTCTCCCAGGTTCAAATTCAGTAGGAAAGAAAGTC----------CTGACAACATCAGTGAACATTTCCTTGGGTATCATTGGCTCCAAAAGTCAGGTACTTATTTCTGAAGCAA-TTACTCTGATTAAAA-------------GATTG------------TTCTTTGCTCACCCCTGAAATAAGAAAAAGGACAGAATCCACTCCATCTGAAACTCAGAGTCTAAGAGTTGAGAACAGATGGTTCTTTCAAAGAAAATTGTGATGTCCAGAAATTGTCAGAATACTTGTCACAAAAGAAGAACACGTAATTCCAGGAAGGC----AAAAAAGAAATGTGTACTGTAATGCAAAATCTAGTCACC-ACAAAGGCTTAGAGGTAGAAATTAAAAGACAATGAAGAgcaaagaagcata----tgaacagttgt---tcaacaatatgtgtcattaaggaagtacaaattaaaacccaa----------------------------------------------------------------aatgaccaaaatccaaaacaccaaaaacaccaaacgctggtaaagatgtggagcagcaggaa i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21199110 463 - 190850796 TGATATTATGTTCTTCCAGGTTCAAATTCAGTAGGAAAGAACGTC----------CTGACAACATCGGGGAAAGTTTCCTTGGGTATCATTGGCTCCAACTGTCAGGTACTTATCTCTTAAGCAA-CCACTCTGACTAAAA-------------GATTG------------TTCTTTGCTCACTCCTGAAATAAGAAAAAGGACAAAATCCACTCCATCTGAAACTCAGAGTCTAAGAGTTGAGAGGAGATGGTTGTTTCAA-----------------GTAAATTATCGGAATACTTGTCACAAAAGAA---CATGTAATTCCAGGAAGGCAAAAAAAAAAAAAATATGTATTATCCTGCAAAATATATGCTCC--------------------------AAGGCAATGAAAggcaaagaagcata----tgaacagtggttcatcaacattatacgccattaaggaagtacaaattaaagccaaa----------------------------------------------------------------aatggccaaaatccaaaacaccaaaaagactaaatactggcaaagatgtggagcagtaggga i calJac3.chr3 C 0 C 0 s canFam3.chr3 3779783 549 - 91889043 TAACTTTATATCAC------TTCAAGTTCAGCAGGAAGGAAAACCTATTGTTTTTCTGACAACATGGATGTAAATTTCAttgtgtcac---------------cagctgcctatccttgaagcaa-tcacggtgaccagagaactcaattctctgattggccagacctctcttctttcctcactcctggaataagggaagaaacataattgaccccattggaaacttagggtctaagagttcagaggggatggttct----a-----------------cgaaagTGTTCATAGTGCCGTCATAAAGGAA---------ATGCAAGGAAGCC----AAAAAATACATGTGCACTGTCCCACAAAA---AGTCTCCCACAAAGGTTTGGAAGTA-AAATACAAAGGTAATGAAGggcagatgagcaca----ttgaaagatgtctcgtatcatcatatgccatttgggaattactaatttaaacaaaagtaaaacaaacaaacaaaaacaaaaacgaaacccaaaggtgagataccactacagaccaattagaatgggtaaaatccaaaatactggaaacaccaaatactggcaagaatgtgcagcaacaggaa i canFam3.chr3 I 775 C 0 e mm10.chr5 49179497 2434 + 151834684 I a score=245747.000000 s hg38.chr4_KI270790v1_alt 77727 84 + 220246 --ctcattcactgctagtgggaatgcaaa--ata--agatttgctttggaagactgttcagcagtttttt---atgaaattaaaaatactctt s panTro4.chr4 21465878 84 + 193495092 --ctcattcactgttagtgggaatgcaaa--ata--agatttgcttcagaagactgtttggcagtttttt---atgaaattaaaaatactctt i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21641034 84 + 198332218 --ctcattcactgctagtgggaacgcaaa--ata--agatttgcttcggaagactgtttggcagtttttt---atgaaattaaaaatactctt i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20253226 84 - 85365473 --ctcattcactgctagtggcaatacaaa--ata--agatttgctttagaagactgtttggcagtttttt---atgaagttaaaaatactctt i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16719750 82 + 184069350 --ctcattcactgctagtgggaatgcaaa--ata--agagtcgctttgtaagactg----gcagtttttttt-atacaattaaaaatactctt i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20760935 82 + 189454096 --ctcattcactgctagtgggaatgcaaa--ata--agagtcgctttgtaagactg----gcagtttttttt-atacaattaaaaatactctt i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16356904 83 + 178775436 --CTCAttcactgttagtgggaatgcaaa--ata--agAGTCGCTTTGGAAGACTG----GCAgttttttttaatacaattaaaaatactcTT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19843450 83 - 48547382 --ctcattcactgctagtgggaatgcaaa--gta--agagtcgctttggaagactg----gcagtttttttttataaaattaaaaatactctt i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21199573 84 - 190850796 --ctcattcattgccagtgggaatgcaaa--ata--acagtcgctttggaagactgtttggcagtttctt---ataaaattataaatattcta i calJac3.chr3 C 0 C 0 s mm10.chr5 49181931 86 + 151834684 --cttactcattgtaactgacagtataagctata--acagcaacttttccacacatattcgcagctatgt---taaagaccagacatgctttt i mm10.chr5 I 2434 C 0 s canFam3.chr3 3780332 88 - 91889043 ctcacgctcaccgcaaacaggaatgcaaa--ttggtgcagccacgttagaagagagtttggcagtttctt---gcaaaattaaacataatctt i canFam3.chr3 C 0 I 223 a score=1237764.000000 s hg38.chr4_KI270790v1_alt 77811 377 + 220246 aacatacaatctaac--aatttgaaa---acatatgtccac-caagaccttgcacatggatgtttatagcagttttatttataattaccaaaacttaaaagcaaccaac--atgtttctgtcggcaaatgaataattaaactgaggtacagctacacaatggactatt-ttcagcatgaaaaataaataaactaccaagtcatgaaaagacatggcttcataaggagaagccttgagtgtg----------------ta-cactaagtggggaaagccaagctgaaaaggctatagactctatgattccaactatatgacattctagaaaaggcaaaaatgataaagacaggaaaaagatcagtggttgcaatgggt-----------------------------------cac-------------------------------------------aaggtca-caagagaag----------aataggc s panTro4.chr4 21465962 379 + 193495092 aatatacaatctaac--agtttgaaa---acatatgtccac-caagaccttgcacatggatgtttatcgcagttttatttataattgccaaaacttaaaagcaaccaacatatgtttctgtaggtgaatgaataattaaactgaggtacagctacacaatggactatt-ttcagcttgaaaaataaataagctatcaagtcatgaaaagacatggcttcataaggagaaaccttaagtgtg----------------ta-cactacgtggggaaagccaagctgaaaaggctatagactctgtgattccaactatatgacattctagaaaaggcaaaaatgataaagaccggaaaaagatcagtggttgcaatgggt-----------------------------------cac-------------------------------------------aagggca-caagagaag----------aacaagt i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21641118 379 + 198332218 aatatacagtctaac--aatttgaaa---acatatgtccac-caagaccttgcacatggatgtttatcgcagttttatttataattgccaaaacttaaaagcaaccaacatatgtttctgtaggcgaatgaataattaaactgaggtacagctacacaatggactatt-ttcagcaagaaaaataaataagctatcaagtcatgaaaagacacggcttcataaggagaaaccttaagtgtg----------------ta-cactacgtggggaaagccaagctgaaaacgctgtagactctatgattccaactatatgacactctagaaaaggcaaaaatgataaagacaggaaaaagatcagaggttgcaatgggt-----------------------------------cac-------------------------------------------aagggca-caagagaag----------aataggc i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20253310 392 - 85365473 aacatacaatctaac--aatttgaga---acatatgtccac-caagacattgcacatggatgtttatagcagttttatttataattgccaaaacttaaaagcaaccaac--aagtttctgtaggcgaatgaataattaaactgaggtacagctacacaatggactatt-ttcagcatgaaaaataaataacctatcaagtgatgaaaagacatggcttcataaggagaaaccttaagtgtgtaaccttaagtgtatata-cactaag-ggggaaagctaagctgaaaaggttatagactctatgattccaactatatgacattctaaaaaaggcaaaaatgataaagacaggaaaaagatcagtggttgcaatgggt-----------------------------------cac-------------------------------------------aagggca-caagagaag----------aataggc i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16719832 379 + 184069350 aacatacaatctaac--aatttgaaa---acatatgtccac-caagaccttgcacatggatgtttatagcagttttatttataattgctaaaactgaaaagcaaccaacatatgtttctgttggtgaatgaataattaaactgaggtatggctacacaatggactatt-ttcagcatgaaaaacaaataagctatcaagtcatgaaaagacatggcttcataaggagaaaccttaaatgtg----------------ta-cactaagtggggaaagccaagctgagaaggccatagattccatgattccaactacatgacattctggaaaaggcaaaaatgataaagacaggaaaaagatcagtggttgcaatgggt-----------------------------------cac-------------------------------------------aagggca-caagagaag----------aataggc i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20761017 379 + 189454096 aacatacgatctaac--aatttgaaa---acatatgtccac-caagaccttgcacatggatgtttatagcagttttatttataattgccaaaactgaaaagcaaccaacatatgtttctgttggtgaatgaataattaaactgaggtatggctacacaatggactatt-ttcagcatgaaaaacaaataagctatcaagtcatgaaaagacatggcttcataaggagaaaccttaaatgtg----------------ta-cactaagtggggaaagccaagctgagaaggccatagattccatgattccaactacatgacattctggaaaaggcaaaaatgataaagacaggaaaaagatcagtggttgcaatgggt-----------------------------------cac-------------------------------------------aagggca-caagagaag----------aataggc i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16356987 379 + 178775436 AACATACAATCTAAC--aatttgaaa---acatatgtccac-caAGACCTTGCACATGGaggtttatagcagttttatttataattgccaaaactgaaaagcaaccAACATATGTTTCTGTTGGTGAATGAATAATTAAACTGAGGTATGGCTACACAATGGACTATT-TTCAGCATGAAAAACAAATAagctatcaagtcatgaaaagacatggctTCATAAGGAGAAACCTTAAATGTG----------------TA-CACTAAGTGGGGAAAGCCAAGCTGAGAAGGCCATAGATTCcatgattccaactacatgacattctggaaaaggcaaaaatgataaagacaggaaaaagatcagtggttgcaaTGGGT-----------------------------------CAC-------------------------------------------AAGGGCA-CAAGAGAAG----------AATAGGC i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19843533 379 - 48547382 aacatacaatctaac--aatttgaaa---acatatgtccac-caagaccttgcacatggatgtttatagcagttttatttataattgccaaaactgaaaagcaaccaacatatgtttctattggtgaatgaataattaaactgaggtatggctacacaatggactatt-ttcagcatgaaaaacaaataagctatcaagtcgtgaaaagacatagcttcataaggagaaaccttaaatgta----------------ta-cactaagtggggaaagccaagctgagaaggtcatagattctatgattccaactatatgacattctggaaaaggcaaaaatgataaagacaggaaaaagatcagtggttgcaatgggt-----------------------------------cac-------------------------------------------aagggca-caagagaag----------aataggc i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21199657 360 - 190850796 aacatacagtttaac--aatttgaaa---acatatgtccac-caagaccttgcacatggatgtttatagcagttttatttaaaattgccaaaacgtaaaagcaaccagcatatgtttctgtaggcgaatgaataattaaactgaggtacagttacacaatggactatt-ttcagcatgaaaaaaaaataagctatcaagtcatgagaagacatggcttcataaagagaaacctcaaatgtg----------------ta-cactaattggggaaagccaagctga----------------acgattccaactatgtgacattctggaaaaggcaaaaatg---aagacaggaaaaagaccagtggttgcaaagggt-----------------------------------cac-------------------------------------------aagggca-caagggaag----------gataggc i calJac3.chr3 C 0 C 0 s mm10.chr5 49182017 331 + 151834684 gacatatgacccagttagatttaaaaaatatatatgtctac-aaaattccagtacatagaaatttatagc---tatgtttttgtctg--aaatcttgtaatcagtaaagatgttcataaggagttgaatagagaaataaatgatagtgtatctagacaacagaatatcattcaatattaaaaataaatcacctatcaagccatgaca-----------------------ttttcaatgca----------------tattactcagcaaaagattccaatttgaaaagactctatactgaatgagtccaactatgtaacatacttggaaagtcagaggtgaca-------gaataataccag-------aattgat--------------------------------------------------------------------------------------------gggatg----------aacgtgt i mm10.chr5 C 0 C 0 s canFam3.chr3 3780643 444 - 91889043 accatacagtccagt--gaaatgaaa---acttaagtctgcacaaaaacctgcatgtggacatttacagcagctttattc--agttgcttaaatttggaagcaaccaagacatccctcaggaggtgaatggatgaatcaactgcggtccatccggacaagggaacattaatcagtgatagaag-aaatgagttac---gccatgaaaagacatg-------aagaaggaaccttaaa---g----------------ca----------aaagaagccaatttgaaaaggctactaatcgcatgatttcagctatgcgacattttggaaaaggta-aaattatggagatggtcaaaagatcattggtttccaggagttgggggtgggtaaagagatgtatgaaaaggtggaacacaggaagttttttctaagattttatttacttatttgagggtgggaggggcagcgggagaaggtgaaggagaaaccggc i canFam3.chr3 I 223 I 105 a score=953654.000000 s hg38.chr4_KI270790v1_alt 78188 301 + 220246 agagcacacaggatttttagggcagtgaaaagattctgtatgatacta-----------ctatgtcattacacctgtgttataatgcacaggatgtatgacacc-----------------------aagagtgaaacctaatgtaaactatgg-ac--taggcaataattatttgtcaatgca-gagtcatcgtttttaacaaatataccactatggggtgtgaagttgacagtggtagaa-gtgtgtgtggtggggggtaggggatatacgggaactctctattccttctactcaattttttt-ggaacctaaaactcctctaaaatataaagtctatt s panTro4.chr4 21466341 312 + 193495092 agagcacacaggatttttagggcagtgaaaagattctgtatgataccacaatggtatatctatgtcattacacctctgttataatgcacaggatgtatgacgcc-----------------------aagagtgaaacctaatgtaaactatgg-ac--taggtagtaattatttgtcaacgca-gagtcatcgtttttaataaatataccactatggggtgtgaagttgacagtggtagag-gtgtgcgtgtgtgggggtaggggatataccggaactctctattccttctactcaagtttttt-tgaaccaaaaactcctctaaaatataaagtctatt i panTro4.chr4 C 0 I 161 s ponAbe2.chr4 21641497 310 + 198332218 agagcacacaggatttttagggcagtgaaaagattctgtatgataccacaatggtatatctatgtcgttacacc--tgttataatgcacaggatgtatgacgcc-----------------------aagagtgaaacctaatgtaaactatgg-ac--taggtaataattatttgtcaatgca-gagtcattgtttttaacaaatataccactatggggtgtgaagttgacagtggtagag-gtgtgcatgtgtaggggtaggggatataccggaactctctattccttctactcaattttttt-tgaacctaaaactcctctaaaatataaagtctatt i ponAbe2.chr4 C 0 I 169 s nomLeu3.chr20 20253702 311 - 85365473 agagcacacaggatttttagggcagtgaaaagattctgtatgatgctgcaatggtatatctatgtcattacacctctgttataatgcacaggatgtatgacacc-----------------------aagagtgaaacctaatgtaaactatgg-ac--taggcaataatcatttgtcaatgca-gagtcatcgtttttaacaaatataccactatggggtgtgaagttgacagtggtagag-gtgtgcgtgtgtgggggtaggcgatataccggaactctctgttccttctactcaattttttt-t-aatctaaaactcctctaaaatataaagtctatt i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16720211 302 + 184069350 agagcacacgggatttttagggcagtaaaaagtttctgtatgatactacaatggta--------tcattacacctctgttaaaatgcacaggatgtatgacgcc-----------------------aagagtgaaacctaatgtaaactatgg-ac--taggcgataattatttgtcaatgca-gagtcatcgtttttaacaaatataccactgtggggtgtgaagttgacagtggtagag-gtgtgcgtgtgtggggttaggggatatacgggaactctctattcttttttctcaattttttt---gaactaaaactcctctaaaatataaagtccatt i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20761396 302 + 189454096 agagcacacgggatttttagggcagtaaaaagtttctgtatgatactacaatggta--------tcattacacctctgttaaaatgcacaggatgtatgacgcc-----------------------aagagtgaaacctaatgtaaactatgg-ac--taggcgataattatttgtcaatgca-gagtcatcgtttttaacaaatataccactgtggagtgtgaagttgacagtggtagag-gtgtgcgtgtgtggggttaggggatatacgggaactctctattcttttttctcaattttttt---gaactaaaactcctctaaaatataaagtccatt i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16357366 302 + 178775436 AGAGCACacgggatttttagggcagtaaaaagtttctgtatgatactacaatGGTA--------TCATTACACCTCTGTTAAAATGCACAGGATGTATGACGCC-----------------------AAGAGTGaaacctaatgtaaactatgg-ac--tagGCGATAATTATTTGTCAATGCA-GAGTCATCGTTTTTAACAAATATACCACTGTGGGGTGTGAAGTTGACAGTGGTAGAG-GTGTGCGTGTGGGGGGTTAGGGGATATACGGGAactctctattcttttttctcaattttttt---gaaCTAAAACTCCTCTAAAATATAAAgtccatt i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19843912 302 - 48547382 agagcacacgggatttttagggcagtaaaaagtttctgtatgatactacaatggta--------tcattacacctctgctaaaatgcacaggatatatgacgcc-----------------------aagagtgaaacctaatgtaaactatgg-ac--taggcgataattatttgtcaatgca-gagtcatcgtttttaacaaatataccactgtggggtgtgaagttgacagtggtagag-gtgtgcgtgtgtggggttaggggatatatgggaactctctattcttttttctcaattttttt---gagctaaaactcccctaaaatataaagtccatt i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21200017 312 - 190850796 agagcacacaagatttttagggcagtgaaaaaattctgtaggatgctacaatggtatatctatgtcactccacctctgttataatgcacagaatgtatgatgcc-----------------------gagagtgaaacctaatgtaaattatgg-tc--taggtgataattatttgtcaatggacaaataatcttttttaacaaatataccactgtggggtatgaagttgttgggggcagag-gtgtgcatgtgtaggg-taggggatatatgagaattctctatttcttctactgaattttgtg-taaaactaaaactcctctaaaatataaagtctatt i calJac3.chr3 C 0 C 0 s mm10.chr5 49182348 280 + 151834684 ggaacacagaag-ctttaaggacgctgaaaatattctttgtgacagtgccatggagaatacatggtatt--agtattgcttaaacacagagtgtgtgcaacatg-----------------------agaactgagctcccaaataaactatgattt--tagggtactattgtgaatc-acgaa-gagta------tccaagtcacatactccagtggtagagaatgctgatcatgggaaga-tcataaatg--------ttggtgaggTAGAAGGACTCTATCTTTTTTATA---------------AACACAAAAATCTCATTAGATGT-AGGCCAATC i mm10.chr5 C 0 C 0 s canFam3.chr3 3781192 330 - 91889043 agaacatggagaatttttaaggcagtgaaaatactctgtatgataccataatgacaaatacatgtcattgtacttttgtccaaatccacagaaagaacaacaccctacagagtgttcagttcacctacagagtgaactgtagtgtaaactatgg-cctgtgggccgttatgacgtgtcagcatc--------cacttgtaacaaacctaccaccgtggtgtgggatgtcgacaatgggggagtttgtgcatgtgtgtgggtagaggatgtatgggaaccctccgaaactgcc-ctcaattttgctatgaacctaaatttgctctaaaa-ataaagCTGACT i canFam3.chr3 I 105 C 0 a score=10010.000000 s hg38.chr4_KI270790v1_alt 78489 2 + 220246 aa s panTro4.chr4 21466814 2 + 193495092 aA i panTro4.chr4 I 161 C 0 s ponAbe2.chr4 21641976 2 + 198332218 aA i ponAbe2.chr4 I 169 C 0 s nomLeu3.chr20 20254013 2 - 85365473 aa i nomLeu3.chr20 C 0 I 170 s rheMac3.chr5 16720513 2 + 184069350 aa i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20761698 2 + 189454096 aa i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16357668 2 + 178775436 aa i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19844214 2 - 48547382 aa i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21200329 2 - 190850796 aa i calJac3.chr3 C 0 C 0 s mm10.chr5 49182628 2 + 151834684 AA i mm10.chr5 C 0 C 0 s canFam3.chr3 3781522 2 - 91889043 AA i canFam3.chr3 C 0 C 0 a score=9104.000000 s hg38.chr4_KI270790v1_alt 78491 6 + 220246 gaaaAA- s panTro4.chr4 21466816 6 + 193495092 GAAAAA- i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21641978 6 + 198332218 GAAAAA- i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20254185 6 - 85365473 GAAAAA- i nomLeu3.chr20 I 170 C 0 s rheMac3.chr5 16720515 5 + 184069350 -gaaaA- i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20761700 5 + 189454096 -gaaaA- i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16357670 5 + 178775436 -gaaaa- i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19844216 5 - 48547382 -gaaaA- i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21200331 4 - 190850796 --gaaa- i calJac3.chr3 C 0 C 0 s mm10.chr5 49182630 6 + 151834684 AAACAA- i mm10.chr5 C 0 I 27 s canFam3.chr3 3781524 6 - 91889043 -aataat i canFam3.chr3 C 0 C 0 a score=75547.000000 s hg38.chr4_KI270790v1_alt 78497 27 + 220246 -------------AACATAT-ATGCAGGTCCCAGAAACCAG s panTro4.chr4 21466822 27 + 193495092 -------------AACATAT-ATGCAGGTCCCAGAAACCAG i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21641984 27 + 198332218 -------------AACATAT-ATGCAGGTCCCAGAAACCAG i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20254191 27 - 85365473 -------------AACATAT-ATGCAGGTCCCAGAAACCAG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16720520 27 + 184069350 -------------AAAATAT-ACGCCGGTCCCAGAAACCAG i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20761705 27 + 189454096 -------------AAAATAT-ACGCCGGTCCCAGAAACCAG i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16357675 27 + 178775436 -------------aaaatat-acgCCGGTCCCAGAAACCAG i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19844221 27 - 48547382 -------------AAAATAC-ACGCCAGTCCCAGAAACCAG i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21200335 28 - 190850796 -------------AACATATAATGCAGGTCCCAGAGACCAG i calJac3.chr3 C 0 C 0 s canFam3.chr3 3781530 35 - 91889043 aatgataataataataataT------CATCTCAGAAGCCAA i canFam3.chr3 C 0 C 0 e mm10.chr5 49182636 27 + 151834684 I a score=2834793.000000 s hg38.chr4_KI270790v1_alt 78524 871 + 220246 TACTCTACACTTTTCCTGACTTCCTTCTTGGCCTTCTCATTAGCACCAAGGTCCCtggtacaccacaaaaagccaaggct-tgaagttagct---gagttttaa-ttctgccag---ctttt-ccttagctccatgaccttgagcaaaatgcctaacctTCACATTCAGATACAAAATGACATAAACC-TGTACA--AATCATATAATTAAGCATCCAGTAACCataagcaatatttattgagcacatactatgtgccagacacta-----aaataagcactttatatataataactaatttaatcctcacttaaccttgtgaggtagttactactgttcccattattttagagcaaaataaaggaatgcagaaagtgattaagtacgtttcataaagtaacatggctaacaagcatgaaagttggaataccagctcagaaaatctaggtctagaagctttgcttttt-accaatacactGAATTCCCT--------------------------GCATATATCATGTCCATACAGAGTAGGGTTTAAAAGTTTTAATTTCCTTTTCTTTCTCTATCCTCTCTCTATTGTGCCTCTTGAATCACAGGAGTTCCACCAACT-TTACATCATTTTTTTTTTAAACTTACAAATAAATAAGTGGAGAGAAATTAAGGTAGTATTAGGAATTCTAGATTCCAAATAACT--GTTTTAAATGGGTTGTAACTTTGAATACATTTTTG-TTTTTGAGTAAGGAGATGGATAACCGGGTAA-TGTATCTAAGATTGACAT-TGGACCAGTATTTCAACTCCTACTTAATTCGTCCTATCTCTACCTCTCTATTCACTTTCCCTTTCAGAAGAAAGAAGGACAGCATAAAAATAATGTCTAATTCAGGCTTTTG----------------GTATGAAA--------------------------------------------------------------------------------TGGTTTT s panTro4.chr4 21466849 870 + 193495092 TACTCTACACTTTCCCTGACTTCCTTCTTGGCCTTCTCATTAGCACCAAGGTCCCtggtacaccacaaaaagccaaggct-tgaagttagct---gagttttaa-ttctgccag---ctttt-ccttagctccgtgaccttgagcaaaatgcctaacctTCACATTCAGATACAAAATGACATAAACC-TGTACA--AATCATATAGTTAAGCATCCAGTAACCataagcaatatttattgagcacatactatgtgccagacacta-----aaataagcactttatgtataataactaatttaatcctcacttaacctcgtgaggtagttactactgttcccattattttagagctaaataaaggaatgcagaaagtgattcagcatgtttcataaagtaacatggctaataagcatgaaagttggaataccagcccagacaatctaggtctagaagctttgctttt--accaatacactGAATTCCCT--------------------------GCATACATCATGTCCATACAGAGTAGCATGTGAAAGTTTTAATTTCCTTTTCTTTCTCTATCCTCTCTCTATTGTGCCTCTTGAATCACAGAAGTTCTACCAACT-TTACATTATTTTTTTTTAAAGCTTACAAATAAATAAGTGGAGGGAAATTAAGGTAGTATTAGGAATTCTAGATTCCAAATAACT--GTTTTAAATGGGTTGTAACTTTGAATAGATTTTTG-TTTTTGAGTAAGGAGATGGATAACTGGGTAA-TGTATCTAAGACTGACAT-TGGACCAGTATTTCAACTCCTACTTAATTCGTCCTATCTCTACCTCTCTATTCACTTTCCCTTTCAGAAGAAAGAAGGACAGCATAAAAATAATGTCTAATTCAGGCTGTTG----------------GTATGAAA--------------------------------------------------------------------------------TGGTTTT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21642011 866 + 198332218 TACTCTACACTTTTCCTGACTTCCTTCTTGGCCTTCTCATTAGCACCAAGGTCCCtggtacaccacaaaaagccaaggct-tgaagttagct---gagttttaa-ttctgccag---ccttt-ccttagctctgtgaccctgagcaaaatgcctaacctTCACGTTCAGATATAAAATGACATAAACC-TGTACA--AATGACA----TAAACATCCAGTAACCacaagcaatatttattgagcacatactatgtgccagacacta-----aaataagcactttatgtataataactaatttaatcctcacttaaccttgtgaggtagttactactgttcccattattttagagctaaataaaggaatgcagaaagtgactaagcatgtttcataaagtaacatggctaataagcatgaaagttggaataccagcccagacaatctaggtctagaagctttgctttt--aCAAATACACTGAATTTCCT--------------------------GCATATATCATGTCCATACAGAGTAGGGTGTAAAAGTTTTAATTTCCTTTTCTTTCTCTATCCTCTCTCTGTTGTGCCTCTTGAATCACAGGAGTTCCACCAACT-TTATATCATTTTTTTTTAAAGCTTACAAATAAATAAGTGGAGGGAAACTAAGGTAGTATTAGGAATTCTAGATTCCAAATAACT--GTTTTCAATGGGTTGTAACTTTGAATAGATTTTTG-TTTTTGAGTAAGGAGATGGATAACTGGGTAA-TGTATCTAAGATTGACAT-TGGACCAGTATTTCAACTCTTACTTAATTCGTCTTATCTCTACCTCTCTATTCACTTTCCCTTTCAGAAGAAAGAAGGGCAGCATAAAAATAATGTCTAATTCAGGCTTTTG----------------GTATGAAA--------------------------------------------------------------------------------TGGTTTT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20254218 870 - 85365473 TACTCTACACTTTTCCCGACTTCCTTCTTGGCCTTCTCATTAGCACCAAGGTACCtagtacaccacaaaaagccaaggct-tgaagttagct---gagttttaa-ttctgccag---ctttt-ccttagctccgtgaccctgagcaaaattcctaacctTCACATTCAGATATGAAATGACATAAACC-TGTACA--AACCACATAGTTAAGCATCCAGTAACCataaacaatatttattgagcacatactatgggccaggcacta-----aaataagcactttatgtataataactaatttaatcctcacttaaacttgtgaggtagttactactgttcccattattttggagcgaaataaaggaatgcagaaagtgattaagcacgtttcataaagtaacatggctaacaagcatgaaagttggaataccagcccagaaaatctaggtctagaagctttgcttttt-accaatacactGAATTCCCT--------------------------GCATATATCATGTCCATACAGAATAGGGTTTAAAAGTTTAAATTTCCTTTTCTTTCTCTATCCTCTCTCTATTGTGCTTCTTGAATCACAGGAGCTCCACCAACT-TTACATCA-TTTTTTGTAAAGCTTACAAACAAGTAAATGGAGGGAAATTAAGGTAGTATTAGGAATTCTAGATTCCAAATAACT--GTTTTCATTGGGTTGTAACTTTGAATAGATTTTTG-TTTTCGAGTAAGGAAATGGATAACTGGGTAA-TGTATCTAAGATTGACAT-TGGACCAGTATTTCAACTCCTACTTAATTCGTGCTATCTCTACCTCTCTATTCACTTTCCCTTTCAGAAGAAAGAAGGACAGCATAAAAATAATGTCTAATTCAGGCTTTTC----------------GTATGAAA--------------------------------------------------------------------------------TGGTTTT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16720547 869 + 184069350 TACTATACACTTTTCCTGACTTCATTCTTGGCCTTCTCATTAGCACCAAGGTCCCtggtacaccacaaaaacccaaggct-tgaagttagct---gagttttaa-ttctgccag---cttttcccttagctctgtgaccctgagcaaaatgcctaacctTCACATTCAGATATAAAATGACATAAATC-TGTACA--AACCACATAGTTAAACATCCAGTAACCAGaagcaatatttattgagcgcatactatgtgccagacacta-----aaataagcactttgtgtataataactaattaaatcttcatttaaccttgtgaggtagttactgctgttcccattattttagagctaaataaaggaatgcagaaagtgattaagcacatttcataaggtaatatagctaataagcatgaacgttggaatacgagcccagacaatct-ggtctagaagctttgctttt--accaatacactGAATTCCCT--------------------------GCATATGTCATGTCCATACAGAGTAGGGTTTAAAAGTTTTAATTTCCTTTTCTTTCTCTATCCTCTCTCCATTGTGCCTCTTGAATCACAGGAGTTCCACCAACT-TTATATCA-TTTTTTTAAAAGCTTACAAATTAATAAGTGGAGGGAAATTAAGGTAGTATTAGGAATTCTAGATTCCAAATAACT--GTTTTCATTGGATTGTAACTTTGAATAGATTTTTG-TTTTTGAGTAAGGAGATGGATAACTGGGTAA-TGTATCTAAGACTGACAT-TGGGCCAGCATTTCGACTCCTAGTTAATTCGTCCTATCTCTAACTCTCTCTTCACTTTCCCTTTTAGAAGTAAGAAGGACAGCATAAAAATAATGTCTAATTCAGGCTTTTG----------------GTATGAAA--------------------------------------------------------------------------------TGGTTTT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20761732 869 + 189454096 TACTATACACTTTTCCTGACTTCATTCTTGGCCTTCTCATTAGCACCAAGGTCCCtggtacaccacaaaaacccaaggct-tgaagttagct---gagttttaa-ttctgccag---cttttcccttagctctgtgaccctgagcaaaatgcctaacctTCACATTCAGATATAAAATGACATAAATC-TGTACA--AACCACATAGTTAAACATCCAGTAACCAGaagcaatatttattgagtacatactatgtgccagacacta-----aaataagcactttgtgtataataactaattaaatcttcatttaaccttgtgaggtagttactgctgttcccattattttagagctaaataaaggaatgcagaaagtgattaagcacatttcataaggtaatatggctaataagcatgaacgttggaatacgagcccagacaatct-ggtctagaagctttgctttt--accaatacactGAATTCCCT--------------------------GCATATGTCATGTCCATACAGAGTAGGGTTTAAAAGTTTTAATTTCCTTTTCTTTCTCTATCCTCTCTCCATTGTGCCTCTTGAATCACAGGAGTTCCACCAACT-TTATATCA-TTTTTTTAAAAGCTTACAAATTAATAAGTGGAGGGAAATTAAGGTAGTATTAGGAATTCTAGATTCCAAATAACT--GTTTTCATTGGATTGTAACTTTGAATAGATTTTTG-TTTTTGAGTAAGGAGATGGATAACTGGGTAA-TGTATCTAAGACTGACAT-TGGGCCAGCATTTCGACTCCTAGTTAATTCGTCCTATCTCTAACTCTCTCTTCACTTTCCCTTTTAGAAGTAAGAAGGACAGCATAAAAATAATGTCTAATTCAGGCTTTTG----------------GTATGAAA--------------------------------------------------------------------------------TGGTTTT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16357702 868 + 178775436 TACTATACACTTTTCCTGACTTCATTCTTGGCCTTCTCATTAGCACCAAGGTCCCTGGTACACCACAAAAACCCAAGGCT-TGAAGTTAGCT---GAGTTTTAA-TTCTGCCAG---CTTTTCCCTTAGCTCTGTGACCCTGAGCAAAATGCCTAACCTTCACATTCagatataaaatgacataaatc-TGTACA--AACCACATAGTTAAACATCCAGTAACCAgaagcaatatttattgagcacatactatgtgccagacacta-----aaATAAGCACTTTGTGTATAAtaactaatttaatcttcatttaaCCTTGTGAGGTAGTTACTGCTGTTCCCATTATTTTAGAGCTAAATAAAGGAATGCAGAAAGTGATTAAGCACATTTCATAAGGTAATATGGCTAATAAGCATGAACGTTGGAATACGAGCCCAGACAATCT-GGTCTAGAAGCTTTGCTTTT--ACCAATACACTGAATTCCCT--------------------------GCATATGTCATGTCCATACAGAGTAGggtttaaaagttttaatttccttttctttctctatcctcTCTCC-TGGTGCCTCTTGAATCACAAGAGTTCCACCAact-ttatatca-tttttttaaaagcttacaaATTAATAAGTGGAGGGAAATTAAGGTAGTATTAGGAATTCTAGATTCCAAATAACT--GTTTTCATTGGATTGTAACTTtgaatagatttttg-tttttgagtaagGAGATGGATAACTGGGTAA-TGTATCTAAGACTGACAT-TGGGCCAGCATTTCGACTCCTAGTTAATTCGTCCTATCTCTAACTCTCTCTTCACTTTCCCTTTTAGAAGTAAGAAGAGCAGCATAAAAATAATGTCTAATTCAGGCTTTTG----------------GTATGCAA--------------------------------------------------------------------------------TGGTTTT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19844248 867 - 48547382 TACTATACACTTTTCCTGACTTCCTTCTTGGCCTCCTCATTAGCACCAAGGTCCCtggtacaccacaaaaacccaaggct-tgaagttagct---gagttttaa-ttctgccag---cttttcccttagctctgtgaccctgagcaaaatgcctaacctTCACATTCAGATATAAAATGACATAAATC-TGTACA--AACCACATAGTTAAACATCCAGTAACCAGaagcaatatttattgagcacatactatgtgccagacacta-----aaataagcactttgtgtataataactaatttaatcttcatttaaccttgtgaggtagttactgctgttcccattattttagagctaaataaaggaatgcagaaagtgattaagcacatttcataaggtaatatggctaataagcatgaacgttggaatacgagcccagacaatct-ggtctagaagctttgctttt--accaatacactGAATTCCCC--------------------------GCATATGCCATGTCCATACAGAGTAGGGTTTAAAAGTTTTAATTTCCTTTTCTTTCTCTATCCTCTCTCCATTGTGCCTCTTGAATCACAGGAGTTCCACCAACT-TTACATCA-TTTTTTTAAAAGCTTACAAATTAATAAGTGGAGGGAAATTAAGGTAGTATTAGGAATTCTAGATTCCAAATAACT--GTTTTCATTGGGTTGTAAC--TGAATAGATTTTTG-TTTTTGAGTAAGGAGATGGATAACTGGGTAA-TGTATCTAAGATTGACAT-TGGGCCAGCATTTCGACTCCTACTTAATTCTTCCTATCTCTAACTCTCTATTCACTTTCCCTTTTAGAAGTAAGAAGGACAGCATAAAAATAATGTCTAATTCAGGCTTTTG----------------GTATGAAC--------------------------------------------------------------------------------TGGTTTT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21200363 892 - 190850796 TACTCTACGGTTTTCCTGACTTCCTTCTTGGCCTTCTCATTAGCACTgaggtacctggtacatgacaaaaagccacggct-taaggttagct---gagttttga-ttctgccag---ccttt-tctcagctgtgtgaccctgagcaaaatgcctaacctTCACATTCAAATATGAAATGAGATAAGCC-TGTACA--AACCACATAGTTACGCACCCAGTATCCataagcaatatttattgagcacatactatgtgccagacccta-----aaataagcactttaagtataataactaatttaatcctcacttaactttttgaggtagttactacagtttccactattttagagttaaataaaggaatgcagaaagtgattaagcatgattcagaaggtaacat-gctaacaagcatgaaagttggaatatgaacccagacaatttcgatctagaagctttactttt--accaGGACACTGAACTCCCCTCTGTATGGACATATACCATGTATGGACATATATCTTGTCCATACAGAGTAGTGCTTTAAATTTTTAATTTGTTTTTCTTTCTCTATCCTTTCTCTATTGCACCTCTTGAATCA---GAGTTCCACCAACT-TTACCGCATTTTTTTAAAAAACATACAAATAAATAAGTGGGGGAATATTAAGGCAGTATTAGGAATTGTGGATTCCAAATAACT--GTTTTCGTTGGGTTGTAACTTTGAATAGATTTTCA-TTGTTGAGTAAGGAGATGGATAACTAGCTAA-TGTATCTACGACTGATAC-TGGATCAGTATTTCAACGTGTACTTAATTCATCCTATCTCTACCTCTCTACTCACTTCTGCTTTTAGAAGAAAGAAGGAAAGCATAAAAATAATGTTGAATTCATGCTTTTG----------------ATAAGAAA--------------------------------------------------------------------------------TGGTTTT i calJac3.chr3 C 0 C 0 s mm10.chr5 49182663 739 + 151834684 TATTCTAAACCTTTTCTCATTTCTTCCATGATTTTGTCATTAAGACCAAGGTCCCTCGAATCTTATAAGAAGGTCAGGCTATGGAATTAGTG-TAGAATTTGAA-------------------CCCTAG--------------------------------------------------------------------------------------------------------------TGGGTATATATGAT----------------------------TTTGTTTATG----------TGATCTAGAGTAAAGCATGTAAACAACTT------------------------------------GTGTAGTAAG-------------------AGGTGACATGGCAAAGAGTCACATGCTCATGCATACAAGCACAGAGAACCTAGACCTAGAACCTTTGCTAAT--GCCAAG--GCTAAACTTCTC--------------------------AAAGATG--GAGCCCATAAACAGTAGAGTTTGGAAGCTTTG-----CTCTTGTTTCTTCATCTATATCCCATTGTA---CTTGAATAACAGTTGTTCCATCAACG-TCAATGAA-TTTCTCTCAAGCTCCTTAAACAAAGAAAT-AAGATAAAACAAAGAACTAGTAGGAGTTGTAGATTACAAATATCTTAATTTTGATTATGTTTCAACTTTAAACCAATTGTTG-ACTTCTAGAAAGGAGATCTATAGCTCAGTTG-GCAATCTAAAAGGAATATATACACTCGTATTTCAACTTATAGTTAATTC---TTATCTGTAGCTCACCAGGCTCCTCTCCTTTCAGAAAT----AGGACCAGGTGAA---ACTGTCATATCCAGGGTTTGGCATCAGAACATTTTATGCTTGAAAGGTAACCCATCCTtatctatctatctatctatctatctatctatctatctatctatctatctTTTTTTTTTTTTTTTttttggtttt i mm10.chr5 I 27 I 104 s canFam3.chr3 3781565 841 - 91889043 ----------TACTCCTGACCTC-TTCTTGCCCTTCTCATTAGCATCAAGGCCCCTGATAAACCATAAAAATTCAAGGCT-TGGGAATTATTCTTGGGTCACATTTTCTACCAGTCACATTT-TCTTAGCTGTACAACCTTGAGTAAAATGCCTAACCTCCAACATCTAGGATAAAATCTGATAATTTGTGTAGATTAATTATGTAGTTAAGCATCtaataatcat----cacacttatggaatattggttaagtgctgggaactaaactgaaatgagcacatcatatataataacttgctcacctgtcatttaaccctccaaagtaggcattactgtttctcctattttagggagaaataaactaaagcagaaagaggctaagaa-gttatacaaagtcccatagttgataagcatgaaagctggactataaacccagatcatgtagatctggaaacttttgtttttccccaatacactaaactACCT--------------------------TTATGT-CCGTATCCGTACAGAGAAGAGCTTACAAGTCCTAATTTCCTTTTTTCCCTCCAT--TCCCTCCATTGGATAGTT--------AGGTGTTCCACCACCTGTGGCATCA-----------AGCTTCCAAGGACATAAGTGGGGACAAACTAAGGTAGCATTAGGAATTCTAGATTCCAAATAACTTCATTTTCATTGGGTTGTTACTTTGAACAGATTTTGGATTTTTGAGTAAGGAGATACACAACTCAGTCACCATATCTGAGATCGCTCC-AGGGCCAGCATTTCAATTCCTACTT-------------TCCACCTTTCCAGCCATCTTCTCTTTGAGAAGTAAGTAGGGAAGAGTAAAAATAATGTCTAATTCTGGCTTCTG----------------ATATGAGA--------------------------------------------------------------------------------CAATTCT i canFam3.chr3 C 0 C 0 a score=1510965.000000 s hg38.chr4_KI270790v1_alt 79395 439 + 220246 AGGTTTTGAAG-----------------------AGTAATCCATTTATGGAACAAA-AGAGTCTTAAGTGAGGCTCGACAAGAATCGAAAGAGTAATAACACTTGACACTG----GG----AAGAATGAATATGCAGAAGAGGAACTTT-AGCTTCTATTACAGAAAAAAA---TATCATTGTTCCCTTCTTCTGTTCATAGATGCATATTGGTTTATGTGACAGATTTATTCCTGAGTCGAGTATATCACATGTTGGTTAACAATATTCACTCTC-TGAGTTTTCTGTTTCGGT-AAGGTGAACCCA--TTTTTTAAAGTAGCTAAttc-ttttgtaatgtctg-agtttcttttgttgtgg-----ttgttttgttttg--ttttttcagttttCTGGCTGTTGCATATA-TCTACCTCAATTGTTGAGTTTCCAAAGATAAGGCA---AGCCtccttccttcc-----------tacatttcttccttccttctttcttt s panTro4.chr4 21467719 439 + 193495092 AGGTTTTGAAG-----------------------AGTAATCCATTTATGGAACAAA-AGAGTCTTAAGTGAGGCTCAACAAGAATCGAAAGAGTAATAACACTTAACACTG----GG----AAGAATAAATATTCAGAAGCAGAACTTT-AGCTTCTATTACAGAAAAAAA---TATCATTGTTCCCTTCTTCTGTTCACAGATGCATATTGGTTTATGTGACAGATTTATTCCTGAGTCGACTATATCAAATGTTGATTAACAATATTCACTCTC-TGAGTTTTCTGTTTCGGT-AAGGTGAACCCA--TTTTTTAAAGTAGCTAATTC-TTTTGTAATGTCTG-AGTTTCTTTTGTTGTGG-----TTGTTTTGTTTTG--TTTTTTCAGTTTTCTGGCTGTTGCATATA-TCTACCTCAATTGTTGAGTTTCCAAAGATAAGGCA---AGCCTCCTTCCTTCC-----------TACATTTCTTCCTTCCttctttcttt i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21642877 438 + 198332218 AGGTTTTGAAG-----------------------AGTAATCCATTTATGGAACAAA-AGAGTCTTAAGTGAGGCTCAACAAGAATCAAAAGAGTAATAACACTTAACACTG----GG----AAGAATGAATATTCAGAAGAGGCACTTT-AGCTTCTATTACAGAAAAAAA---TATCATTGTTCCCTTCTTCTGTTCATAGATGCATATTGGTTTATATGACAGATTTATTCCTGAGTCGAGTATATCAAATGTTGGTTAA-AATATTCACTCTC-TGAGTTTTCTGTTTTGGT-AAGGTGAACCCA--TTTTTTAAAGTAGCTAATTC-TTTTGTAATGTCTG-AGTTTCTTTTGTTGTGG-----TTGTTTTGTTTTG--TTTTTTCAGTTTTCTGGCTGTTGCATATA-CCTACCTCAATTGTTGAGTTTCCAAAGATAAGGCA---AGCCTCCTTCCTTTC-----------TACATTTCTTCCTTCCttctttcttt i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20255088 442 - 85365473 AGGTTTTGAAA-----------------------AGTAATCCATTCATGGAACAAA-AGAGTCTTAACTGAGGCGCAGCAAGAATCTAAAGAGTAATAACACTTAACATTG----GG----AAGAATAAATATTCAGAAGCAGAACTTT-AGCTTCTATTACAGAAAAAAA---AATCATTGTTCCCTTCTTCTGTTCACAGATGCATATTGGTTTATGTGACAGATTTATTCCTGAGTCGAGTATATCAAATGTTGGTTAACAATATTCACTCTC-TGAGTTTTCTGTTTCGGTAAAGGTGAACCCA--TTTTTTAAAGTAGCTAATTC-TTTTGTAATATCTG-AGtttcttttgttgtgg-----ttgttttgttttgttttttttcagttttCTGGCTGTTGCATATA-TCTACCTCAATTGTTGAGTTTCCAAAGATAAGGCA---AGCCtccttccttcc-----------tacattccttctttccttctttcttt i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16721416 449 + 184069350 AGGTTTTGAAG-----------------------AGTTATCTATTTATGGAACAAA-AGAGTCTTAAGTGAGGCTCAACAAGAATTGAAAGAGTAATAACACTTAACACTG----GG----AAGAATGAATATTCAGAAGAGGAACTTTTAGCTTCTATTACAGAAAAAAAAA-TATCAATGCTCCCTTCTTCTGTTCATAGATGCATATTAGTTTATGTGACAGATTTATTCCTGAGTCGAGTATATCAAATGTTGGTTGACAATATTCACTCTC-TGAGTCTTCTGTTTCGGT-AAGGTAAACCCA--GTTTTTAAAGTAGCTAATTC-TTTTGTAATGTCCA-AGGTTCTTTTGTTGTGGttgttttgttttgttttgttttgtttCAGTTTTCTGGCTGTTACATATA-TCTACCTCAATTGTTGAGTTTCCAAAGATAAGGCA---AGCCtccttccctcc-----------tacatttcttccttccttctttcttt i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20762601 449 + 189454096 AGGTTTTGAAG-----------------------AGTTATCTATTTATGGAACAAA-AGAGTCTTAAGTGAGGCTCAACAAGAATTGAAAGAGTAATAACACTTAACACTG----GG----AAGAATGAATATTCAGAAGAGGAACTTTTAGCTTCTATTACAGAAAAAAAAA-TATCAATGCTCCCTTCTTCTGTTCATAGATGCATATTAGTTTATGTGACAGATTTATTCCTGAGTCGAGTATATCAAATGTTGGTTGACAATATTCACTCTC-TGAGTTTTCTGTTTCGGT-AAGGTAAACCCA--GTTTTTAAAGTAGCTAATTC-TTTTGTAATGTCCA-AGGTTCTTTTGTTGTGGttgttttgttttgttttgttttgtttCAGTTTTCTGGCTGTTACATATA-TCTACCTCAATTGTTGAGTTTCCAAAGATAAGGCA---AGCCtccttccctcc-----------tacatttcttccttccttctttcttt i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16358570 445 + 178775436 AGGTTTTGAAG-----------------------AGTTATCTATTTATGGAACAAA-AGAGTCTTAAGTGAGGCTCAACAAGAATTGAAAGAGTAGTAACACTTAACACTG----GG----AAGAATGAATATTCAGAAGAGGAACTTTTAGCttctattacagaaaaaaaaactatcattgCTCCCTTCTTCTGTTCATAGATGCATATTAGTTTATGTGACAGATTTATTCCTGAGTCGAGTATATCAAATGTTGGTTGACAATATTCACTCTC-TGAGTCTTCTGTTTTGGT-CAGGTAAACCCA--GTTTTTAAAGTAGCTCATTC-TTTTGTAATGTCCG-AGGTTCttttgctgtgg-----ttgttttgttttgttttgtttcagttttctggCTGTTGCATATA-TCTACCTCAATTGTTGAGTTTCCAAAGATAAGGCA---AGCTTCCTTCCCTCc-----------tacatttcttccttccttctttcttt i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19845115 444 - 48547382 AGGTTTTGAAG-----------------------AGTTATCTATTTATGGAACAAA-AGAGTCTTAAGTGAGGCTCAAGAAGAATTGATAGAGTAATAACACTTAACGCTG----GG----AAGAATGAATATTCAGAAGAGGAACTTTCAGCTTCTATTACAGAAAAAAAAG-TATCACTGCTCCCTTCTTCTGTTTATAGATGCATATTAGTTTATGTGACAGATTTATTCCTGCGTCGAGTATATCAAATGTTGGTTGACAACATTCACTCTC-TGAGTTTTCTGTTTCGGT-AAGGTAAACCCA--TTTTTTAAAGTAGCTAATTC-TTTTGTAATGTCCA-AGGttcttctgttgtgg-----ttgttttgttttgttttgtttcagttttCTGGCTGTTGCATATA-TCTACCTCAATTGTTGAGTTTCCAAAGATAAGGCA---AGTCTCCTTCCTTCC-----------TACATTTCTTCCCTTCttctttcttt i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21201255 438 - 190850796 AGGTTTTGAAG-----------------------AGTAATCCATTTATGCAACAAA-AGAATCTTAAGTGAGGCTCAACAAGAACTGAAAGAGTAATAGCACTTACCCCTG----TG----AAAAATGAATATTCAGAAGAGGAACTTT-AGCTTCAATTACAGAAAAAA----TAACATTGCTCCCCTCTTCTGTTCATAGATGCATCTTGATTTATGCGACAGATTTATTCCTGAGTCAAGTATATCAAATGTTGGTGTACAATATTCACTCTCTTGAGTTTTCTGTTTCCAT-AAGGTGAATCCA--TTTTTTAAAGTACCTAATTC-TCTTGTAATGTCCA-GGGTTCTTTTGTTATGA-----TTGTTTCATTTTG---ATTTTCAGTTTTCTGGCTGTTGCATATA-TCTACATCAATTGCTGAGTTTTCAAAGATAAGGCA---AGCCTCCTTCCTTCC-----------TACATTCTTTCCTTCCTTATtttgtt i calJac3.chr3 C 0 C 0 s mm10.chr5 49183506 431 + 151834684 agggtttaaaggcatgcaccaccaatgcctggcAGGTAACCCATTCTTAAAGCAAAGGGAATCTTAAGTAAATTTCAGTGAAAACATGGAGAGCAATAACACTTAATACTA----ATATACAACAATGAATATTCTGATAAGGAACTCC-ACCTTCAATTACCCAGACAAAAT-TGCCATTGTTCTCCTATTCTGTCAATTAATTTATGAAGTTATATGTGAGAATTTTA--CTTGTGTCAAATATGTAAAATTTT-------AATAAT-AGTTTC-TGAGCCT---------------------------TTTTAAAGGCATCTAATTCTTTTTATAATGTCCATAAATATCTTTGTTG--------TTATTT---------TAATTTCTGTTCTCTGA---------ATA-TCC-TTTCAATTGCAGAGTTGTTAAAGTTTAAGCATCTATCCTTCTTCCTTCCCTTCATTTAGTTACCCTCCCCCCATTCACCCTTCCTT i mm10.chr5 I 104 I 86 s canFam3.chr3 3782406 422 - 91889043 GGTCCTTGAAT-----------------------GGTTATCCATTTATGGAACAAA-AGAGTC--AAGTGAAATTGAACAAGAGCAGAAAGAGAAATCACACTTAACATTAATCTGA----AGTGATGAATATTCAGAGAAGGAACGTT-AGCTTCAGTTACAGACAAAAA---CACCGCTGCTCCGCTCTTCTGCTCAGAGATGC----TGGTTTATGCAACAGATTTATTTCTGTGCCAAGTATATTACATGTTGGTTAACAAGATTCACTCTC-AGAGTTTTCTGTTCAGGT-AAAGTGAAATAATTTTTTTTTAAGCCATTAATTT-TTTCGTAAGGCCC--AGACTTTGTTGTTGATG-----TTGTTCTG-------TTTTTCCATTTTTCTGACCGTCACATATGCCCTCCTTCCACTGCCAAGTTCTCAAAGATAAAGCG---TGTCTTCTTCTCTTC-----------AG------------GCTCCTTTCTCT i canFam3.chr3 C 0 C 0 a score=87164.000000 s hg38.chr4_KI270790v1_alt 79834 41 + 220246 GAGAAACATT-----------------------TATTTAGA---CACTGGGC-----------------GGGGGGAATAAAGAT s panTro4.chr4 21468158 43 + 193495092 gagaaacatt-----------------------tatttaga---cactgggc---------------tgggggggaataaagat i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21643315 41 + 198332218 gagaaacatt-----------------------tatttaga---cactgggc-----------------ggggggaataaagat i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20255530 42 - 85365473 gagaaacatt-----------------------tatttaga---cactgggt----------------gggggggaataaagat i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16721865 45 + 184069350 GAGAAACATT-----------------------TATCTAGA---CACTGGTGGG-------------GGGAGGGGAACAAAGAT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20763050 45 + 189454096 GAGAAACATT-----------------------TATCTAGA---CACTGGTGGG-------------GGGAGGGGAATAAAGAT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16359015 45 + 178775436 gagaaacatt-----------------------tatttaga---cactggtggg-------------gggaggggaataaagat i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19845559 45 - 48547382 aagaaacatt-----------------------tatttaga---cactggtggg-------------gggaggggaataaagat i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21201693 62 - 190850796 cagaaacatttattgaacacttactgtgaatgatatttaga---cactgt-------------------gagaggcataacgat i calJac3.chr3 C 0 C 0 s canFam3.chr3 3782828 59 - 91889043 CAGGAATATT-----------------------TGTTGAGAACCTACTAGAAGAGTACTTAGGCCTTGTGGGAGATATAAAG-- i canFam3.chr3 C 0 C 0 e mm10.chr5 49183937 86 + 151834684 I a score=180738.000000 s hg38.chr4_KI270790v1_alt 79875 45 + 220246 GAATAAGATATGGGTCTTAAAAGATC-AGAAATAGAGTTAAACACA s panTro4.chr4 21468201 45 + 193495092 gaataagatatgggtcttAAAAGATC-AGAAATAGAGTTAAACACA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21643356 45 + 198332218 gaataagatatgggccttAAAAGATC-AGAAATAGAGTTAAACAAA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20255572 45 - 85365473 gaataagatatgggtcttAAAAGATC-AGAAATAGAGTTAAACACA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16721910 45 + 184069350 GAATAAGATATGGGTTGTAAAAGATC-AGAAATAGAGTTAAACACA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20763095 45 + 189454096 GAATAAGATATGGGTCGTAAAATATC-AGAAATAGAGTTAAACACA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16359060 45 + 178775436 gaataagatacGGGTCGTAAAAGATC-AGAAATAGAGTTAAACACA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19845604 45 - 48547382 gaataagacatggGTCGTAAAAGATC-AGAAATAGAGTTAAACACA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21201755 45 - 190850796 gaataagatatgggtcctAAAAGATC-AGAAATAGAACTAAACACA i calJac3.chr3 C 0 C 0 s mm10.chr5 49184023 45 + 151834684 GAATAAGATACAGGTCTCAAAGTATC-AACACTGTAGGTTAATACA i mm10.chr5 I 86 I 567 s canFam3.chr3 3782887 44 - 91889043 --ATAAGATGTGGTTCTTAAAAGATCAAAAAATAGAGCTAAACACA i canFam3.chr3 C 0 C 0 a score=686191.000000 s hg38.chr4_KI270790v1_alt 79920 222 + 220246 ATTAACATATGGGAGTTGGCTCATCAGAGCAATGACACTGACTGATCTGCTCACTGAATATTCACAAGTTCTCCTCACACcccttttacaactaggtggggtcatgtgactgactctgaccaggaa-gccctgag--tggaagtaaagcttgtcatttccaggccagagtacataattgctggtgcaagactttccagcaaacacttgcctagagactcaagaag s panTro4.chr4 21468246 218 + 193495092 ATTTACATATGGGAGTTGGCTCATCAGAGCAATGACACTGACTGATCTGCTCACTGAATATTCATAAGTTCTCCTCACACcccttttacaactaggtggagtcatgtgact----ctgaccaccaa-gctctgag--tggaagtaaagcttgtcatttccaggccagagtatgtaattgctggtgcaagactttccagcaaacagttgcctagagactcaagaag i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21643401 222 + 198332218 ATTAACATATGGGAGTTGGCTCATCAGAGCAATGACACTGACTGCTCTGCTCACTGAATATTCATAAGTTCTCCTCACACcccttttacaactaggtggggtcatgtgactgactctgaccaccaa-gctctgag--tggaagtaaagcttgtcattttcaggccagaatacataattgctggtgcaagactttccagcaaacacttgcctagaaactcaagaag i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20255617 222 - 85365473 ATTAACGTATGGAAGTTGGCTCATCACAGCAATGACACTGACTGATCTGCTCACTGAATATTCATAAGTtctcctcacatcccttttacaattaggtggggtcatgtgactgactctgaccaccaa-gctctgag--tggaagtaaagcttgtcatttccaggccagagtatgtaattgctggtgcaagactttccagcaaacacttgcctagagactcaagaag i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16721955 222 + 184069350 ATTAACATATGGGAGTTGGCTCATTAGAGCAATGACACTGGCTGATCTGCTCACTGAATATTCATCAGTTCTCCTCACATTccttttacaactaggtggggccatgtgactgacactgaccaccaa-gctctgag--tggaagtaaagcttgtcattttcaagctacagtatgtaattgctggtgcaagactttccagcaaacacttgcctagagactcaagaag i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20763140 222 + 189454096 ATTAACATATGGGAGTTGGCTCATTAGAGCAATGACCCTGGCTGATCTGCTCACTGAATATTCATCAGTTCTCCTCACATTCTTTTTACAACtaggtggggccatgtgactgacactgaccaccaa-gctctgag--tggaagtaaagcttgtcattttcaagctacagtatgtaattgctggtgcaagactttccagcaaacacttgcctagagactcaagaag i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16359105 197 + 178775436 ATTAACATAT-GGAGTTGGCTCATCAGAGCAATGACACTGACTGATCTG------------------------CTCACACTCCTTTTACAACTAGGTGGGGCCATGTGACTGACAGTGACCACCAA-GCTCTGAG--TGGAAGTAAAGCTTGTCATTTTCAAGCTACAGTATGTAATTGCTGGTGCAAGACTTTCCAGCAAACACTTGCCTAGAGACTCAAGAAG i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19845649 222 - 48547382 ATTAACATATGGGAGTTGGCTCATCAGAGCAATGACACTGACTGATCTGCTCACTGAATATTCATCAGTTCTCCTCACATTccttttacaactaggtggggccatgtgactgacactgaccaccaa-gctctgag--tggaagtaaagcttgtcattttcaggctacagtatgtaattgctggtgcaagactttccagcaaacactggcctagagactcaagaag i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21201800 222 - 190850796 GTTAACATACAGGAGTTGGCTCACCAGAGCAATGACACTGACTAATCTGCTCACTGAATATTCATAAGctttcctcacaccctttttacaactaggtggggtcatgtgactgactctgaccaccaa-gctctgag--tagaagtaaagctttccatttccagcccagagtacgtaatagctggtgcaagacttaccagcacacgcttgcctagagatttaggaag i calJac3.chr3 C 0 C 0 s canFam3.chr3 3782931 195 - 91889043 ATTAACACAGGGCAGTTCACTCATGGGAGCCATGACATTGACCAGCCTGTTAAGTTA------------------------CCCTTTACACCGAGGAGGGGTCATTGGACTAACTCTGGCCGTTAACGCTGTGAGCACAGAAGGAAAGCCTCTC-TTTGCAGGCTGGAGTATTTAAATGTTGATGCAAGACTTTTCAGCAAATTCTTTTTTTTTTTTTTT----- i canFam3.chr3 C 0 C 0 e mm10.chr5 49184068 567 + 151834684 I a score=1656025.000000 s hg38.chr4_KI270790v1_alt 80142 492 + 220246 ccacatattctggattgtatttttccaaaatggag------gagacatcgtcagcctagattgacagttaattatgaggaattcagct-ctccactacccagcatgagacgtgggccatgtatgagaaatagaactttgttg-cttgaagggactgaa---aactcggggttaa-tttaggggctcagcatggcttatcctaatcagactaatataTTTATAACATGGGATGGAAAACACAGGG-aataat---aacatttacgtaga-------gtgggcccagaattattttaagtacgtaacacatatcacttcacatcatcctcataacaatccaatgaagtaggtac------tattattatttccattttacagatgagtaaagtgaggcacaagcaggtaaccaacttgcctacaaatatataattaaacatgttggagctgggaattaaacttaggccatctggctccagggttcattaactcaacaacaatgcaat-TAGAAAACAAAACAA---A s panTro4.chr4 21468464 493 + 193495092 ccacatattctggattgtgtttttccaaaatgggg------gagacatcctcagcctagattgacagttaatgatgaggaattcagct-ccccactacccagcattagacgtgggccatgtatgagaaatagatctttgttg-cttgaaggaactgaa---aactcagggttaa-tttaggggctcagcatggcttatcctaatcagactaatacaTTTGTAACATGGGATGGAAAACACAGGG-aataac---aacatttacgtagatctaactgtgggcccagaattattttaagtacataacacatatcacttcacgtcatcctcacaacaatccaatgaagtaggtac------tactattatttccattttacagatgagtaagttgaggcacaagcaggtaaccaatttgcctacaaatacataattaaacatgttggaggtgggaattaaacctaggccatctggctccagggttcattacctta-caaca-tgcA-T-TAGAAAC--AAACAA---- i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21643623 500 + 198332218 ccacatattctggattgtgtttttccaaaatgggg------gagacatcctcagcctagattgacagttaactatgaggaattcagct-ccccactacccagcattagacatgggccatgtatgagaaatagaactttgttg-cttgaaggaactgaa---aattcggggttaa-tttaggggctcagcatggcttatcctaatcagactaatataTTTATAACATGGGATGGAAAACACAGGGAaataat---aacatttatgtagatctaactgtgggcccagaattattttaagtacataacacatatcatttcacgttatcctcacaacaatccaatgaagtaggtac------tactattatttccattttacagatgagtaacttgaggcacaagcaggtaaccaatttgcctacaaatatataataaaacatgttggagctgggaattaaacctaggccatctggctccagggttcattaccttaacaagaatgcaat-TAGAAAACAAAACAA---A i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20255839 502 - 85365473 ccacatattcgggattgtgtttttccaaaatgggg------gagacatcctcagcctagattgacagttaattatgaggaattcagct-ccccactatccagcattagatgtgggccatgtatgagaaatagatctttgttg-cttgaaggaactgaaaacaactcggggtcaa-tttaggggctcagcatggcttatcctaaacagactaatacGTTTATAACATGGGATGGAAAACACAGGG-aataat---aacatttatgtagatctaactgtgggcccagaattattttaagtacataacacataacacttcacgtcatcctcactacaatccaatgaagtaggtac------tactattatttccattttacagatgagtaaattgaagcacaagcaggtaaccaatttgcctacaaatatataattaaacatgttggagctgggaattaaacctaggccatctggctccagggttcattaccttaacaacaatgcaat-TAGAAAACAAAACAA---A i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16722177 499 + 184069350 ccacatattctgcattgtgtttttccaaaatgggg------gagacaccctcagcataggttgactgttaatcatgcagaattcagct-ccccactatccaacactagacgtgagccacgaatgaggagtagacttttgttg-cttgaaggaactgaa---aactcagggttaa-tttaggggcccagcatggttaatcctaatcagactaatacaTTTATAACATGGGATGGAAAACACAGGA-aataat---aacatttatgtagatctaactatgggcccagaattattttaagtatataatacgtatcacttcatgtcatcctcacaacaatccaatgaagtaggtac------tgctattatttccattttacagatgagtaaattgaggcacaagcaggtaaccaacttccctagaaatatatagttaaacatgttggaactgggaattaaacctaggccatctggctctagggttcattaccttaacaacaatacaat-TAGAAAACTAAACAA---A i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20763362 499 + 189454096 ccacatattctgcattgtgtttttccaaaatgggg------gagacaccctcagcataggttgactgttaatcatgcagaattcagct-ccccactatccaacactagacgtgagccacgaatgaggagtagacttttgttg-cttgaaggaactgaa---aactcagggttaa-tttaggggcccagcatggttaatcctaatcagactaatacaTTTATAACATGGGATGGAAAACACAGGA-aataat---aacatttatgtagatctaactatgggcccagaattattttaagtatataatacgtatcacttcacgtcatcctcacaacaatccaatgaagtaggtac------tgctattatttccattttacagatgagtaaattgaggcacaagcaggtaaccaacttccctagaaatatatagttaaacatgttggaactgggaattaaacctaggccatctggctctagggttcattaccttaacaacaatacaat-TAGAAAACTAAACAA---A i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16359302 499 + 178775436 CCATATATTCTGCATCGTGTTTTTCCAAAATGGCG------GAGACACCCTCAGCATAGACTGACTGTTAATCATGCAGAATTCAGCT-CCCCACTATCCAGCACTAGACGTGAGCCACGAATGAGGAATAGACTTTTGTTG-CTTGAAGGAACTGAA---AACTCAGGGTTAA-TTTAGGGGCCCAGCATGGTTAATCCTAATCAGACTAATACATTTATAACATGGAATGGAAAACACagga-aataat---aacatttatgtAGATCTAACTATGGGCCCAgaattattttaagtatataatacgTATCACTTCACatcatcctcacaacaatccaATGAAGTAGGTAC------tgctgttatttccattttacagatgagtaaattgaGGCACAAGCAGGTAACCAACTTCCCTAGAAATATATAGTTAAACATGTTGGAACTGGGAATTAAACCTAGGCCATCTGGCTCCAGGGTTCATTACCTTAACAACAATACaat-tagaaaactaaacaa---a i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19845871 499 - 48547382 ccacatattctgcattgtgtttttccaaaatgggg------gagacaccctcagcatagattgactgttaatcatacagaattcagct-ccccattatccaacactagacgtgaaccacaaatgaggagtagacttttgttg-cttgaaggaactgaa---aactcagggttaa-tttaggggcccagcatggttaatcctaatcagactaatacaTTTATAACATGGGATGGAAAACACAGGA-aataat---aacatttatgtagatctaactatgggcccagaattattttaagtacataatatgtatcacttcacgtcatcctcacaacaatccaatgaagtaggtac------tgctattatttccattttacagatgagtaaattgaggcacaagcaggtaaccaacttgcctagaaatatatagttaaacatgttggaactgggaattaaacctaggacatctggctctagggttcattaccttaacaacaatacaat-TAGAAAACTAAACAA---A i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21202022 492 - 190850796 ccacatatcctggactgtgcttttccaaaatgggg------gagagatcttcagcctaggttgacagttacttatgaggaattcagct-ccccactatccagcattagacatgggccataaataagaaatagacctttgttg-ctttaaggaacggaa---acctc-gggttaa-ttgaggggctcagtatgggctatcctaatcagacttatacaTTTATAAC-----ATGGAAAACACAGGA-aataataacaacatttatgtagatcttactatgggcccagaattattttaagtacttaacatatatcacttaaagtcatcctcacaacaacccaatgaagtag----------tagtattatttccattttacagatgagtaaattgaggcacaagcaggtaaccaacttgcctacaaatatataattaaaaatcttggagctggaaattaaacctaggccatctggctccaggattcattatcttaacaacagtgcaat-TAGAAAACAAAACAA---G i calJac3.chr3 C 0 C 0 s mm10.chr5 49184635 473 + 151834684 CTACAAATTCT------TCTCTTTAAAAACTGGGGAAATGAGGGATATCATCACTCTGAAT-----------------GTATTTAACC-TTCTAGTAACCAGTTTTGTGTATGGGCTGTGAATAAAAAG-GGAACTTAGCAGCCTTTCAAAAAGGGAA---ATGCCAGAGGTAA-TGTTGGGATAC--TATGGTGTATGCTATTTTGTTTGGTATGTTCT---CATGGGGTAGTAAATATGGGA-AATAAT---ACATTTTATGTCTACCTGACAAGGGACccaggactattacaactctct---gcatttaatgtcatgttctcctcacaatgatacaac--agaaggtgc------tattgttattcgtacattaaagttaaatactttgagacacatgtagataatt-atttgctggtgcacagaaaaataa--atactgacactgataactaaacctaacccatttgactccaatgtctgtaacctcaacaattgtacaatGTAGAAAACAGAAAAAGGGG i mm10.chr5 I 567 C 0 s canFam3.chr3 3783126 487 - 91889043 CTGGATATTCTTGATGGTTCTGTTTCCAAAAGGAG------AAGGAGTCGTCGTCCGGGGTTGACAGGTGAAAGTGTGGACCTCAGCTCCCCCAGTGCTCAGTGCTGGATATGGGCCGTGGATGTGCATTGAACCTTTGTTG-CTTTATGAAACTGAA---ACTTTAGGTTCACTTTTGGGGGTGCAGCGTGACGTGTTCTACT----TTAATATATTCACAATGGGGACTAGAGAACAGAAGA-aataac---aacatttatgaagatcttactatgggcccagaattgttttaagca----------attactgcatgccatcct-acaacaacactaagaaataggtactattgttattattattcccacattaaagatgtataaactgaggcatgagcaggtaa-tggtctgctcataaatatagaactaaa-atgttagaccttggaattaaacctaagttttttggctctaagattcatgACAT---CAACAATGTGAT-AAGAAAAAAAAAAAA---A i canFam3.chr3 C 0 I 246 a score=216754.000000 s hg38.chr4_KI270790v1_alt 80634 62 + 220246 TGCGCAATTGCACAATGGAAGTATACTGTCTCAGGGTTTCCTTCAATTTGGAATATTAATAT s panTro4.chr4 21468957 60 + 193495092 TGCGCA-TTGCACAATGGAAGTATACTGTCTCAGGGTTTCCTTCAATTTGGA-TATTAATAT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21644123 62 + 198332218 TGCGCAATTGCACAATGGAAGTATACTGTCTCAGGGTTTCCTTCAATTTGGAATATTAATAT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20256341 62 - 85365473 TGCGCAATTGCACAATGGAAGTATACTGTCTCAGGGTTTCCTTCAATTTTGAATATTAATAT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16722676 62 + 184069350 TGTGCAATTGCACAATGGAAGTATACTGTCTCAAGGTTTCCTTCAATTTGGAATATGAATAT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20763861 62 + 189454096 TGTGCAATTGCACAATGGAAGTATACTGTCTCAAGGTTTCCTTCAATTTGGAATATGAATAT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16359801 62 + 178775436 tgtGCAATTGCACAATGGAAGTATACTGTCTCAAGGTTTTCTTCAATTTggaatattaatat i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19846370 62 - 48547382 TGTGCAATTGCACAATGGAAGTATACTGGCTCAAGGTTTCCTTCAATTTGGAATATTAATAT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21202514 62 - 190850796 TGTGCAATTGCACAGTGGAAGTATACTGTCTCAGGGTGTCCTTCAATTTGGAATATTGATAT i calJac3.chr3 C 0 C 0 s mm10.chr5 49185108 62 + 151834684 TGCACAATTAAACCATGGAGGTATGCTGTCACAAGCTATCCTTCAAGATGGAATATTAATAT i mm10.chr5 C 0 C 0 e canFam3.chr3 3783613 246 - 91889043 I a score=2652563.000000 s hg38.chr4_KI270790v1_alt 80696 937 + 220246 TTAGAATCAACATTTGGCACATTCCATTTGGAATAttatgttggtgcaaaagtaactgtggttttggtcatgaaaagtaatggcaaaaaccacaattacttttTTAAAAAAAATTTATTATACtttttatactttaagttctgggatatgtgtgcagaatgtgcaggtttgttacataggtatacatgtgccatggtgatttactgcacccatcaacctgtcatctaggttttaagtcccacatacattagctatttgtcctaatgctatccctacccttgcaccccaaccc-tctgacaggccccagtgtgtgatgttcccctccctgtgtccatgtgttctcactgttcaactcccactaatgag----tgagaacatgagatgtttggttttctgttcctgtgatagtttgctgagaatgatggtttccagctccgtccatgtccctgcacaggacatgaactcattcttttttatggctaaatagtattccacggtgtatatgtgccacattttctttatccagtctatcattgatgggcatttgggttggttccaagtctttgctactatgaatagtgctacagtaaacatgagtatgcatgtgt------ctttatagtagaatgatttataatcctttgggtatatacccagtaatgggattgctgggtcaaatggtatttctggttccagatccttgaggaat-gccacactgtcttccacaacgcttgaactaatttacactcctaccaacagtgtaagagcattcctatttctcctcttcttctccagcatc--cagtttcctgactttttaatgacagcccttctaattggcatgatacggtatctcactatagtttatgcaagcaataaacatat-gaaaaaaaagctcatcatcactggtcattagagaattgcaaTTACTTTTGCACAAACCTAAATA s panTro4.chr4 21469017 922 + 193495092 TCAGAATCAACATTTGGCATATTCCATTTGGAATAttatgctggtgcaaaagtaactgtggtttcggtcataaaaagtaatggcaaaaaccgcaattacttttT-----AAAATTTATTATACtttttatactttaagttctgggatacatgtgcggaacttgcaggtttgttacataggtatacatgtgccatggtgatttgttgcacccatcaacctgtcatctaggttttaagtcccacatacattaggtatttgtcctaatgctaaccctacccttgc-ccccaaccc-tctgacaggcccc-------gacgttcccctccctgtgtccatgtgttctcattgttcaactctcacttatgag----tgagagcatgagatgtttggttttctgttcctgtgatagtttgctgagaatgatggtttccagctccgtccatgtccctgcacaggacatgaactcattcttttttatggctacatagtattccacagtgtatatgtgccacatttgctttatccagtctatcattgatgggcatttgggttggttccaagtctttgctactatgaata-tgctacagtaaacattagtatgcatgtgt------ctttatagtagaatgatttataatcctttgggtatatacccagtaatgggattgctgggtcaaatggtatttctggttccagatccttgaggaat-gccacactgtcttccacaatgcttgaactaatttacactcctaccaacagtgtaaaagcattcctatttctccacatcttctccagcatc--cagtttcctgactttttaatgacagcccttctaactggcatgatatggtatctcactatagtttatgcaaccaataaacatat-gaaaaaaa-gttcatcatcactggtcattagagaattgcaaTTACTTTTGCACCAACCTAAATG i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21644185 933 + 198332218 TTAGAATCAACATTTGGCATATTCCATTTGGAATAttatgctggtgcaaaagtaattgtggttttggtcatgaaaagtaatggcgaaaaccgcaattacttttTTTAAAAAAATTTATTATACtttttatactttaaattctgggatacatgtgcagaacgtgcaggtttgttacataggtatacatgtgccatggtgatttgctgcacccatcaacctgtcatctaggttttaagtcccacatacattaggtatttgtcctaatgctatccctacccttgc-ccccaaccc-tctgacaggccccagtgtgtgatgttcccctccttgtgtccatatgttcttattgttcaactcccatttatgag----tgagaacatgagatgtttggttttctgttcctgtgatagtttgctgagaatgatggtttccagctccacccatgtccctgcacaggacatgaactcattcttttttatggctacatagtattccacagtatatatgtgccacattttctttatccagtctatcattgatgggcatttgggttggttccaagtctctgttactatgaatagtgctacagtaaacgt--gtgtgtatgtgt------ctttatagtagaatgatttataatcctttgggtatatacccagtaatgggattgctgggtcaaatggtatttctggttccagatccttgaggaat-gccacactgtcttccacaatgcttgaactaatttacactcctaccaacagtgtaaaagcattcctatttctccacatcttctccagcatg--tcgtttcctgacttttcaatgattgcccttctaattggcatgatatggtatctcactatagtttatgcaaccaataaacatat-gaaaaaaa-gctcatcatcactggtcattagagaattgcaaTTACTTTTGCACCAACCTAAATA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20256403 937 - 85365473 TTAGAATCAACATTTGGCATATTCCATTTGGAATAttatgctggtgcaaaagtaactgtggttttggtcatgaaaagtaaaggcaaaaaccgaaattacttttTAAAAAAAAATTTATTATACtttttatactttaagttctgggatacatgtgtagaacgtgcaggtttgttacataggtatgcatgtgccatggtgatttgctgcacccatcaatctgtcttctaggttttaagtcccacatacattaggtatttgtcctaatgctatccctacccttgg-ccccaaccc-tctgacaggccccagtgtgtgatgttcccctccctgtgtccatgtgttctcattgttcaactcccatttatgag----tgagaacatgagatgtttggttttctgttcctgtgatagtttgccgagaatgatggtttccagctccatccatgtccctgcacagaacatgaactcattcttttttatggctacatagtattccacagtatatatgtgccacattttctttatccagtctatcattgatgggcattcgggttggttccaagtctttgctcctatgaatagtgctacagtaaacatgtgtgtgtatgtgt------ctttatagtagaatgatttataatcctttgggtatatacacagcaatgggattgctgggtcaaatggtatttttggttccagatccttgaggaat-gctacactgtcttccacaatgcttgaactaatttacactcctaccaacagtgtaaaagcattcctatttctccacatcttctccagcatctgtcgtttcctgactttttaatgattgcccttctaattggcatgatatagtatctcactatagtttatgcaaccaataaacgtat-gaaaaaaa-gctcatcatcactggtcattagagaattgcaaTTACTTTTGCACCAACCTAAATA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16722738 932 + 184069350 TTAGAATCAACATTTGGCATATTCCATTTGGAATAttatgttggtgcaaaagtaactgtggttttggtcatgaaaagtaatggcaaaaagtgcagttacttttT-TAAaaaaaatgattatactttttatactttaagttctgggatacatgtgcagaacgtgcaggtttgttacataggtatacatgtgccatggtggtttgctgcacccatcaacctgtcatctaggttttaagtcctacatacattaggtatttgtcctaatgctatccctacccttgc-tcccaactc-tctgacaggtcccggtgtgtgatgttcccctttctgtgtccatgtgttctcactgttcaactcccacttaggagttcatgagaacatgaggtgttcggttttctgttcctgtaatagtttgctgagaataacgatttacagcttcgtccatgtccctgcatagtacatgaactcattcttttttatggctgcatagtattccatggtgtatatgtgccacattttctttatccagtccatcattgatgggtatttgggttggttccaagtctttgctattgtgaacagtgctacagtaaacat--------gtgtgt------ctttatagcagaatgatttataattctttgggtatatacccagtaatgggattgctgggtcaaatggtatttctggttccagatccttgaggaat-gccacactgtcgtccacaatgcttaaactaatttacactcccaccaacagtgtaaaagtgttcctatttctccacatcttctccggcatctgttgtttcctgactttttaatgattacccttctaactggcatgatatggtatctcactgtggtttatgcaaccaataaacatat-gaaaaaaa-gctcatcatcactggtcattacagaaccacaaTTACTTTTGCACCAACCTAAATA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20763923 931 + 189454096 TTAGAATCAACATTTGGCATATTCCATTTGGAATAttatgttggtgcaaaagtaactgtggttttggtcatgaaaagtaatggcaaaaagtgcagttac-tttA-AAAaaaaaatgattatactttttatactttaagttctgggatacatgtgcagaacgtgcaggtttgttacataggtatacatgtgccatggtggtttgctgcacccatcaacctgtcatctaggttttaagtcctacatacattaggtatttgtcctaatgctatccctacccttgc-ccccaactc-tctgacagttcccggtgtgtgatgttcccctttctgtgtccatgtgttctcactgttcaactcccacttaggagttcatgagaacatgaggtgttcggttttctgttcctgtaatagtttgctgagaataacgatttacagcttcgtccatgtccctgcatagtacatgaactcattcttttttatggctgcatagtattccatggtgtatatgtgccacattttctttatccagtccatcattgatgggtatttgggttggttccaagtctttgctattgtgaacagtgctacagtaaacat--------gtgtgt------ctttatagtagaatgatttataattctttgggtatatacccagtaatgggattgctgggtcaaatggtatttctggttccagatccttgaggaat-gccacactgtcgtccacaatgcttaaactaatttacactcccaccgacagtgtaaaagtgttcctatttctccacatcttctccggcatctgttgtttcctgactttttaatgattacccttctaactggcatgatatggtatctcactgtggtttatgcaaccaataaacatat-gaaaaaaa-gctcatcatcactggtcattacagaaccacaaTTACTTTTGCACCAACCTAAATA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16359863 931 + 178775436 ttagaatCAACATTTGGCATATTCCATTTGGAATAtcatgttggtgcaaaagtaactgtggttttggtcatgaaaagtaatggcaaaaagtgcagttacttttt-taaaaaaattgattatac-ttttatactttaagttctggggtacatgtgcagaacatgcaggtttgttacataggtatacatgtgccatggtggtttgctgcacccatcaacctgtcatctaggttttaagtcctacatacattaggtatttgtcctaatgctatccctacccttGC-CCCCAACTC-TctgacaggtcccggtgtgtgatgttcccctctctgtgtccatgtgttctcactgttcaactcccacttaggagttcatgagaacatgaggtgtttggttttctgttcctgtaatagtttgctgagaataacgATTTACAGCTTCGTCTATGTCCCTGCATAGTACATgaactcattctcttttatggctgcatagtattccatggtgtatatgtgccacattttctttatccagtccatcattgatgggcatttgggttggttccaagtctttgctattgtgaacagtgctacagtaaacat--------gtgtgt------ctttatagcagaatgatttataattctttgggtatatacccagtaatgggattgctgggtcaaatggtatttctggttccagatccttgaggaat-gccACACTGTCGTCCACAATgcttaaactaatttacactcccaccgacagtgtaaaagtgttcctatttctccacatcttctctggcatctgttgtttcctgactttttaatgattacccttctaactggcatgatatggtatctcactgtggtttatgcaaccaataaacatat-gaaaaaaa-gctcatcatcactggtcattacagaaccacaattacttttgcaccaacctaaata i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19846432 932 - 48547382 TTAGAATCAACATTTAGCATATTCCATTTGGAATAttatgttggtgcaaaagtaactgtggttttggtcatgaaaagtaatggcaaaaagtgcagttaattttT-TAAAAAAATTGATTATACtttttatactttaagttctgggatacatgtgcagaacgtgcaggtttgttacataggtatacacgtgccatggtggtttgctgcacccatcaacctgtcatctaggttttaagtcctacatacattaggtatttgtcctaaggctatccctacccttgc-ccccaactc-tctgacaggccccggtgtgtgatgttcccctctctgtgtccatgtgttctcactgttcaactcccacttaggagttcatgagggcataaggtgttcggttttctgttcctgtaataatttgctgagaatgatgatttacagcttcgtccatgtccctgcatagtacatgaactcattcttttttatggctgcatagtattccatggtgtatatgtgccacattttctttatccagtccatcattgatgggcatttgggttggttccaagtctttgctattgtgaacagtgctacagtaaacat--------gtgtgt------ctttatagtagaatgatttataattctttgggtatatacccagtaatgggattgctgggtcaaatggtatttctggttccagatccttgaggaat-gccacactgtcgtccacaatgcttaaactaatttacactcccaccgacagtgtaaaagtgttcctatttctccacatcttctccggcatctgttgtttcctgactttttaatgattacccttctaactggcatgatatggtatctcactgtggtttatgcaaccaataaacatat-gaaaaaaa-gctcatcatcactggtcattacagaaccacaaTTACTTTTCCACTAACCTAAATA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21202576 917 - 190850796 TTGGAATCAACATTTGGCATAT--CATTTGGAATAttatgttggtgcaaaagtaac--tggttttggtcatgaaacgtaatggcaaaaactgtaattacttt-----AAAAAATTTACTATAttttttatgctttaagttctgggatacatgtgcagaacgtgcag----gttacaaaggtatacatgtgccatggtggtttgctccacccatcaacccgtcatctaagtttgaagccccacatgaactaggtttttgtcctaatgctctccctatgcttgc-tcccaccccacctgacaggcccaggtgtgtgattttcccctcctggtgtccatgtgttctcatcgttcaa----cacttatgaa----ttagaacatgcggtacttgttcttctgttcctctgttag-ttgctgggaataatggtttccagcttcatctgtgtccctgcacaggacatgaattcattcttttttatggctgcatagtattccatggtatatatatgccacattttctttatccagtctatcattgatgggcatttgggttggttccaagtctttcctattgtgaatagtgctgcagtaaatatgtgtacacgtgtatataaaccattacagtagaatggtttataatcctttgtgtatatacccagaaatgggattgctgggttaaacattatttcaggttccagatccttgaggaatcaccacactgtcttccaaaatgcttgaactagtttacaatcccaccaacagtataaaataatttatatttc------ttgcttccagcatctcttgtttc----ctttttaattatcgccattctaactgacataacatggtatcttactgtggttCAC-Tggccaacaaacatatagaacaaaa-gctcatcatcactggtcattagagaaccacaaatACTTTTGCATGAACCTAAATA i calJac3.chr3 C 0 C 0 e mm10.chr5 49185170 0 + 151834684 C e canFam3.chr3 3783613 246 - 91889043 I a score=4500.000000 s hg38.chr4_KI270790v1_alt 81633 1 + 220246 G s panTro4.chr4 21469939 1 + 193495092 G i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21645118 1 + 198332218 G i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20257340 1 - 85365473 G i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16723670 1 + 184069350 G i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20764854 1 + 189454096 G i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16360794 1 + 178775436 g i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19847364 1 - 48547382 G i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21203493 1 - 190850796 G i calJac3.chr3 C 0 C 0 s canFam3.chr3 3783859 1 - 91889043 G i canFam3.chr3 I 246 C 0 e mm10.chr5 49185170 0 + 151834684 C a score=2302042.000000 s hg38.chr4_KI270790v1_alt 81634 702 + 220246 TACCATCTAGTCCCTGaaaaaatatttattgagaatctaccgtgtgctgacttctctgttc-------a-------gcCTCAATCCTATCCTAGGTAGTGGAAAACTGAGAATCCCCAGGAGCATGTGAGAAATTAAACAGAGCAGCTTCAGGGGCCACTTGAAATCTCCTGCTTTCCAGAGCAACTTGTGTTGAAGCACAGAGAAA-GTGTTGAGGATTGTTACTTCAATAAATCCC-----C-------AAATTTGCATTAGAA---GACACTTAGTTTGTCCTTAGCGCAACCAACGCCTTGTATC-ATGGCCCAACTCTCTTAATTGTTCAGCTTTCATTCTCTGTTTCTTGTTTAACACAATGGTCTG-TATCTCATAGAATTCC-AAACAGACAT--AGGCTACTTTTGTCTTAAGGCAAATTGGCTTATAATTATACTAATTCAACTAATATTTATATTTTACC---A---TCTACAATAAAAATTTTCAACTGTTTGGATGAATTCTAATGGGCAAATATTTC--------------------------------AGTACACCATAATTGGGCTTCAAA------------------------GGCAATTT----------------------------TTATTAATGCTTCTTGTAACATACGAATAAACACATTTATATATATGTTACAAGAAGTC----TATTGACTCTGTAAATGGTAAAATCTGTTAACACTGCATT-----TTTATTT-------CTG----CTGTTGCTTTTAGGAGTTGATCTCCATAACCTG-GAATAAAGATATTGTCTTT-C----TTAACTTGGCATGTTGCT s panTro4.chr4 21469940 702 + 193495092 TATCATCTAGTCCCTGaaaaaatatttattgagaacctaccgtgtgctgacttctctgttc-------a-------gcCTCAATCCTATCCTAGGTGGTGGAAAACTGAGAATCCCCAGGAGCATGTGAGAAATTAAACAGAGCAGCTTCAGGGGCCACTTGAAATCTCCTGCTTTCCAGAGCAACTTGTGTTGAAGCACAGAGAAA-GTGTTGAGGATTGTTACTTCAATAAATCCC-----C-------AAATTTGCATTAGAA---GACACTTAGTTTGTCCTTAGCGCAACCAACGCCTTGTATC-ATGGCCCAACTCTCTTAATTGTTCAGCTTTCATTCTCTGTTTCTTGTTTAACACAATGGTCTG-TATCTCATAGAATTCC-AAACAGACAT--AGGCTACTTTTGTCTTAAGGCAAATTGGCTTATAATTATACTAATTCAACCAATATTTATATTTTGCC---A---TCTATAATAAAAATTTTCAACTGTTTGGATGAATTCTAATGGGAAAATATTTC--------------------------------AGTAAACCATAATTGGGCTTCAAA------------------------AGCAATTT----------------------------TTATTAATGCTTCTTGTAACATATGAATAAACACATTTATATATATGTTACAAGAAGTC----TATTGACTCTGTAAATGGTAAAATCTGTTAACACTGCATT-----TTTATTT-------CTG----CTGTTGCTTTTAGGAGTTGACCTCCATAACCTG-GAATAAAGATATTGTCTTT-C----TTAACTTGGCATGTTGCT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21645119 698 + 198332218 TATCatttagtccctgaaaaaatatttattgagaacctaccgtgtgctgacttctctgttc-------a-------gcCTCAATCCTATCCTAGGTGGTGGAAAACTGAGAATCCCCAGGAGCATGTGAGAAATTAAACAGAGCAGCTTCAGGGGCCACTTGAAATCTCCTGCTTTCCAGAGCAACTTGTGTTGAAGCACAGAGAAA-GTGCTGAGGGTTGTTACTTCAATAAATCCC-----C-------AAATTTGCATTAGAA---GACAGTTAGTTTGTCCTTAGCGCAACCGACGCCTTGTATC-ATGGCCCAACTCTCCTAATTGTTCAGCTTTCATTCTCTGTTTCTTGTTTAACACAATGGTCTG-TGTCTCATAGAATTCC-AAACAGACAT--AGGCTACTTTTGTCATAAGGCAAATTGGCTTATAATTATACTAATTCAACTAATATTTATATTTTGCC---A---TCTATAATAAAAATTTTCAAC----TGGATGAATTCTAATGGGCAAATATTTC--------------------------------AGTAAACCATAATTGGGCTTCAAA------------------------AGCAATTT----------------------------TTATTAACGCTTCTTGTAACATATGAATAAACACATTTATATATATGTTACAAGAAGTG----TATCGACTCTGTAAATGGTAACAACTGTTAACACTGCATT-----TTTATTT-------CTG----CTGTTGCTTTTAGGAGATGACCTCCATAACCTG-GAACAAAGATATTGTCTTT-C----TTAACTTGGCATGTTGCT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20257341 701 - 85365473 TATCATCTAGTCCCTGaaaaaatatttatggagaacctaccgtgtgctgacttctctgttc-------a-------gcCTCAATCCTATCCTAGGTGGTGGAAAACTGAGAATCCCCAGGATCGTGTGAGGAATTAAACAGAGCAGCTTCAGGGGCCACTTGAAATCTCCTGCTTTCCAGAGCAACTTGTGTTGAAGCACAGAGAAA-GCGTTGAGGATTGTTACTTCAATAAATCCC-----C-------AAATTTGCCTTAGAA---GACAGTTAGTTTGTCCTTAGCGCAACTGACGCCTTGTATC-ATGGCCCAACTCTCCTAATTGTTCAGCTTTCATTCTCTGTTTCTTGTTTAACACAATGGTCTG-TATCTCACAGAATTCC-AAACAGACAT--AAGCTACTTTTGTCATAAAGCAAATTGGCTTATAATTATACTATTTCAACTAATATTTATATTTTGCC---A---TCTATAATAAAAATTTTCAACTGTTTGGATGAATTCTAATGGGCAAATATTTC--------------------------------AGTAAACCATAATTGGGCTTCAAA------------------------AGCAATTT----------------------------TTAGTAATGCTTCTTGTAACATATGAATAAACACATTTATATATATGTTACAAGAAG-G----TATTGACTCTGTAAATGGTAACAACTGTTAACACTGCATT-----TTTATTT-------CTG----CTGTTGCTTTTAGGAGTTGACCTCCATAACCTG-GAATAAAGATATTGTCTTT-C----TTAACTTGGCTTGTTGCT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16723671 704 + 184069350 TATCATCTAGTCCCTGaaaaaatatttactgggaacctaccatgtgctgacttctctgttc-------a-------gcCTCAATCCTATCCTAGGTGGTAGATAAGTGAGAATCCCCAGGGGCATGTGAGAAATGAAACAGAGCGGCTTCAGGGGCCACTTGAAATCTCCTGCTTTCCAGAGCAACTTGTGTTGAAGCGCAGAGAAG-GTGTTGAGGATTGTTACTTCAATAAATCCC-----C-------AAATTTGTATTAGTA---AGCAGTTAGTTTGTCCTTAGTACAACCAACACCTTGTATC-ATGGCCCAACTCTCCTAATTGTTCAGCTTTCGTTCTCTGTTTCTTGTTTAACACAATGGTCTG-TATCGCATAGAATTCC-AAATAGATATTAAGGCTACTTTTGTCATAAGGCAAATTGGCTTATAATTATACCAATTCAATTAATATTTATATTTTGCC---A---TTTATAATAAAAATTTTCAACTATTTGGATGAATTCTAATGGACAAATATTTC--------------------------------AGTAAACCATAATTGGACTTCAAA------------------------AGCAATTT----------------------------TTATTAAAGCTTCTTGTAACATATGAATACACACATTTATATATATGTTACAAGAAGTC----TATTGACTCTGTAAATGGTAACAACTGTTAAAACTGCATT-----TTTATTT-------CTG----CTGTTGCTTTTAGAAGTTGACCTTCATAACCTG-GAATAAAGATACTGTCTTT-C----TTAACTTGGAATGTTGCT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20764855 704 + 189454096 TATCATCTAGTCCCTGaaaaaatatttactgggaacctaccatgtgctgacttctctgttc-------a-------gcCTCAATCCTATCCTAGGTGGTAGATAAGTGAGAATCCCCAGGGGCATGTGAGAAATGAAACAGAGCGGCTTCAGGGGCCACTTGAAATCTCCTGCTTTCCAGAGCAACTTGTGTTGAAGCGCAGAGAAG-GTGTTGAGGATTGTTACTTCAATAAATCCC-----C-------AAATTTGTATTAGTA---AGCAGTTAGTTTGTCCTTAGTACAACCAACACCTTGTATC-ATGGCCCAACTCTCCTAATTGTTCAGCTTTCATTCTCTGTTTCTTGTTTAACACAATGGTCTG-TATTGCATAGAATTCC-AAATAGATATTAAGGCTACTTTTGTCATAAGGCAAATTGGCTTATAATTATACCAATTCAATTAATATTTATATTTTGCC---A---TTTATAATAAAAATTTTCAACTATTTGGATGAATTCTAATGGACAAATATTTC--------------------------------AGTAAACCATAATTGGACTTCAAA------------------------AGCAATTT----------------------------TTATTAAAGCTGCTTGTAACATATGAATACACACATTTATATATATGTTACAAGAAGTC----TATTGACTCTGTAAATGGTAACAACTGTTAAAACTGCATT-----TTTATTT-------CTG----CTGTTGCTTTTAGAAGTTGACCTTCATAACCTG-GAATAAAGATACTGTCTTT-C----TTAACTTGGAATGTTGCT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16360795 702 + 178775436 tATCATCTAGTCcctgaaaaaatatttactgggaACCTACCATGTGCTGACTTCTCTGTTC-------A-------GCCTCAATCCTATCCTAGGTGGTGGATAAGTGAGAATCCCCAGGGGCATGTGAGAAATGAAAC--AGCGGCTTCAGGGGCCACTTGAAATCTCCTGCTTTCCAGAGCAACTTGTGTTGAAGCGCAGAGAAG-GTGTTGAGGATTGTTACTTCAATAAATCCC-----C-------AAATTTGTATTAGTA---AGCAGTTAGTTTGTCCTTAGTACAACCGACGCCTTGTATC-ATGGCCCAACTCTCCTAATTGTTCGGCTTTCATTCTCTGTTTCTTGTTTAACACAATGGTCTG-TATCGCATAGAATTCC-AAATAGACATTAAGGCTACTTTTGTCATAAGGCAAATTGGCTtataattatatcaattcaattaatatttatattttgcc---a---tttataataaaaattttcaactattTGGATGAATTCTAATGGACAAATATTTC--------------------------------AGTAGACCATAATTGGACttcaaa------------------------agcaattt----------------------------ttattAAAGCTTCTTGTAacatatgaatacacacatttatatatatgttacaaGAAGTC----TATTGACTCTGTAAATGGTAACAACTGttaaaactgcatt-----tttattt-------ctg----ctgttgCTTTTAGAAGTTGACCTTCATAACTTG-GAATAAAGATATTGTCTTT-C----TTAACTTGGAATGTTGCT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19847365 704 - 48547382 TATCAACTAGTCCCTGAAAAAATATTTACTGGGAACCTACCATGTGCTGACTTCTCTGTTC-------A-------GCTTCAATCCTATCCTAGGTGATAGATAAGTGAGAATCCCCAGGGGCATGTGAGAAATGAAACAGAGCGGCTTCAGGGGCCACTTGAAATCTCCTGCTTTCCAGAGCAACTTGTGTTGAAGTGCAGAGAAG-GTGTTGAGGATTGTTACTTCAATAAATCCC-----C-------AAATTTGTATTAGTA---AGCAGTTAGTTTGTCCTTAGTACAACCGACGCCTTGTATC-ATGGCCCAACTCTCCTAATTGTTCAGCTTTCATTCTCTGTTTCTTGTTTAACACAATGGTCTG-TATCGCATAGAATTCC-AAATAGACATTAAGGCTACTTTTGTCATAAGGCAAATTGGCTTATAATTATACCAATTCAATTAATATTTATATTTTGCC---A---TTTATAATAAAAATTTTCAACTATTTGGATGAATTCTAATGGACAAATATTTC--------------------------------AGTAAACCATAATTGGACTTCAAA------------------------AGCAATTT----------------------------TTATTAAAGCTTCTTGTAACATATGAATACACACATTTATATATATGTTACAAGAAGTC----TGTTGACTCTGTAAATGGTAACAACTGTTAAAACTGCATT-----TTTATTT-------CTG----CTGTTGCTTTTAGAAGTTGACCTTCATAACCTG-GAATAAAGATACTGTCTTT-C----TTAACTTGGAATGTTGCT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21203494 696 - 190850796 TATTATCTAATTCCTGaaaaaatatttattgagaatctaatgtgtgctgac-cctctgttC-------A----------TCAATCCTCTCCTAGGTGGAGGATAACTGAGAGTCACCAGGAGCATACAAGAAATGAAATGGAGTGGCTTTGGGGGCCACTTGAAATCTCCTGCTTTCCAGAGTAACTTGTGTTGAAACACAGAGAAA-GGGTTCTGGATTGTTACTCCAATAAATCCC-----CGAATGTAAAATTTGCTTTAGAA---GACA--------GTCCTTAGCACAATTGACACCTTGTGTC-ATGGCCCAATTCTCCTAATTGTCCAGGTTTTATTCTCTGCTTCTTGTTTAACACAATGGTCTG-TATCTCATAGAATTCCAAAACAGACAT--AGGCTAGTTTTGTGATAAAGCAAATTGGCTTGTAA-TATACTAATTCAATTAATATTTGTATTTTGGC---A---TTTATAATAAAAATTTTCAAGTGTTTAAATGAATTCTAATGGGCAAATATTTC--------------------------------ACTAAACTGTCATTGTCCTTCAAA------------------------AGCAATTT----------------------------TTATTGACGCTTCTTGTAGCATATGAATACATACATTTATATATATGTTACAAGAAGTC----TACTGACTCTGTAAATGGTAACGACCGTTAAAACTGCATT-----TTTACTT-------CTG----ATGTTGCTTTTAGGAGTGGACCTCCATAACCTG-GAATAAAGACATTGTCTTT-C----TTAAC-TGGAATGTTGCT i calJac3.chr3 C 0 C 0 s mm10.chr5 49185170 780 + 151834684 TACCATTT-TTTCCTGGGAGAGTATT----GAGAACCAG--GTGTGGTGACCTCTGCATTC-------AGTGATGAGTATCATTACTATTATA-----TGGATAAC--AGCATTTTCAAGAGCCCATAGAAACTACTACAGAGGAATTGCAGGGGCCACTGGCA---TTCTGCTTTCTAGTGTAACAAATGCTAAAGCATTACAGAG-CTATTTATATCCTTAGCCTCCATAGATATCAAATAT-------AAATTTCTCTTATTGTATGATGGCAGGGTGGTTCCTTTGGCAATACTCACATTGTACC-AAGTACCAGCTCTTTGGAATGTTTAG--TTCCCTCTCTGCTTAATGTTTAACACAATGGACTTCCAGTTTGTAAAGCCTC-AAAGCTATTT--AGGCTAGTCATATCACTGTATAAATTAACTGAAAATTATACTGACT----TGATGTTTGTAGTATGCTCTGA---TATGCAA-AAAATCTTCCAAGGACTTAAAATCCTTCTAATTGGTATATGTACCCTCCAGGACTGCTTTAATTGACTCTAGCTAAGAATACACTGTAGTTGACTTGTAAACTGCTATGCCTTTGAGGAGAAGTCAGAGATATATGAAAATCAAAACGGTGCAAAAATGAGCTATTACTGCTTCATATAATCAATAAAT--GTACAATCACATAT---TAAAAGAAAGTC----TACTTGCTTAGCTAATG---ACTACAGTTAAAGTCACATT-----TTTCACT-------TAGGACACTATTGCTTTTAGGAAT--ATCTTTGAATATTGTGAAAAAAAACAtttttttc-cattttttattaggtatttagct i mm10.chr5 C 0 I 1914 s canFam3.chr3 3783860 690 - 91889043 TGTTACCTATACCCTTGAAGGATATTTACTGAGACCCTACTGTGGGCTGGCCACTGTGTCCCATGGTGA-------TTTTCAATGGTCTCC---ATGGTCAATAACTCTG---CCTTGGGAGCCCATGGGGAATGCACCCGAGCAGCCACAGGTGCCACTTGAA----TCCGCTTTGCAGAGTAACTTGTGCTGAAGCATCAAGAGGTGCACCCCACGTTGCTGGCTCAATAGATCCC-----TCAATATTAAGCTGTTGTTAGGA---CGTAGCTGATTTGTCCTT--------TGGCACTTCGGACCTGTTGTTCAGCTTTCCTGATTGCCCAGCTCTTGCTCTTAGCAACTTGTGTAACATGATAGTCTG-CACCTCCCAGAGTTCC-AAAAGGTGGC--AGGCTAGTTTGGCCATACTGCAGATGGCTCTATGATCCTACTAATCCAATTCGTATTTACATTTTGCA---ATTTTTTATGCTGAAACTTTTCAACCGCTTGGATTAACTCTAATGGGCAGATATTTA--------------------------------AATAAGCCATCACTGTGTTGCAAA------------------------AGCAACTT-----------------------------CATTCATGCTTC-----ATATATAAAC---------------------ACAAGAAGTCTACTTACTGACTCAATAAATGCTGACAACTGTTAAAATTGCCTTATTTATTTATTTTTTTCCCCTA----TGGCTGCTTTTAGGAGTTGCCCTGCTTTTCCAG-G---ATAAACACTGCCCCCAT----TTAACTTGAAATGTTGCT i canFam3.chr3 C 0 C 0 a score=293796.000000 s hg38.chr4_KI270790v1_alt 82336 106 + 220246 AAAGTCACAGTCAAATCAAATTGTGTGTGCACTGTTTTGAAA-CCCCCCTCCCT-ATCTCCATCTACCTTTCCTGGAGAGGaaaaaataaaaac---------aaaaaagaacaaaa--- s panTro4.chr4 21470642 106 + 193495092 AAAGTCATAGTCAAATCAAATTGTGTGTGCACTGTTTTGAAA-CCCCCCTCCCT-ATCTCCATCTACCTTTCCTGGAGAGGAaaaaataaaaac---------aaaaaagaacaaaa--- i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21645817 107 + 198332218 AAAGTCATAGTCAAATCAAATTGTGAGTGCACTGTTTTGAAA-CCCCCCTCCCT-ATCTCCATCTACCTTTCCTGGAGAGGAaaaaataaaaac--------aaaaaaagaacaaaa--- i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20258042 107 - 85365473 AAAGTCATAGTCAAATCAAATTGTGTGTGCACTGTTTTGAAATCCCCCCTCCCT-AACTCCATCTACCTTTCC-GGAGAGGaaaaaacaaaaac--------aaaaaaagaacaaaa--- i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16724375 105 + 184069350 AAAGTCATAGTCAAATCAAATTGTGTGTGCATTGTTTTGAAATCCCCCCTCCCT-ATCTCCATCTACCTTCCC--AGGAGGAaaaaataaaaac---------aaaaaagaacaaaa--- i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20765559 105 + 189454096 AAAGTCATAGTCAAATCAAATTGTGTGTGCATTGTTTTGAAATCCCCCCTCCCT-ATCTCCATCTACCTTCCC--AGGAGGaaaaaataaaaac---------aaaaaagaacaaaa--- i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16361497 108 + 178775436 AAAGTCATAGTCAAATCAAATTGTGTGTGCATTGTTTTGAAATCCCCCCTTCCT-ATCTCCATCTACCTtccc--aggaggaaaaaataaaaaca------aaaaaaaagaacaaaa--- i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19848069 108 - 48547382 AAAGTCATAGTCAAATCAAATTGTGTGCACATTGTTTTGAAATCCCCCCTCCCT-ATCTCCATCTACCTTCCC--AGGAGGaaaaagtaaaaaca------aaaaaaaagaacaaaa--- i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21204190 108 - 190850796 AAATTCATAGACAAATCAAATTGTGTGTGTACTGTTTTGAGATCCCCCCTCCCTCAGCCTCATCTACCTTTCC-AGAAACAAAAAACTAAAAAC--------AAAAAAAGAAGGAAA--- i calJac3.chr3 C 0 C 0 s canFam3.chr3 3784550 112 - 91889043 AAAGTCAGAATCGTGTCAATTTATTTGCATGATGTTCTGATATCCTCTGGACCT------TATCTATACCTCT--GGGATGAAAAAAAAAAAGTAAATTTTAAAACAGAgaagaaagaaa i canFam3.chr3 C 0 I 172 e mm10.chr5 49185950 1914 + 151834684 I a score=459901.000000 s hg38.chr4_KI270790v1_alt 82442 132 + 220246 acaaaGCTTGCCTCCACCTGGCTTTGAGCCAGGGAAGAAGAAGAAAGAAGCTTTTGTTATTGATGCTATTTATAACCCTGAATTACTC-CGTTAGAATAATGGGGCCTGAGCAGGGGAAGATCTTTTGTTTGC s panTro4.chr4 21470748 132 + 193495092 acaaaGCTTGCCTCCACCTGGCTTTGAGCCAGGGAAGAAGAAGAAAGAAGCTTTTGTTATTGATGCTATTTATAACCCTGAATTACTC-CGTTAGAATAATGGGGCCTGAGCAGGGGAAGATCTTTTGTTTCC i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21645924 132 + 198332218 acaaaGCTTGCCTCCACCTGGCTTTGAGCCAGGGAAGAAGAAGAAAGAAGCTTTTGTTATTGATGCTATTTATAACCCTGAATTACTC-TGTTAGAATAATGGGGCCTGAGCAGGGGAAGATCTTTTGTTTGC i ponAbe2.chr4 C 0 I 218 s nomLeu3.chr20 20258149 132 - 85365473 acaaaGCTTGCCTCCACCTGGCTTTGAACCAGAGAAGAAGAAGAAAGAAGCTTTTGTTATTGATGCTATTTATAACCCTGAATTACTC-TGTTAGAATAATGGGGCCTGAGCAGGGGAAGATCTTTTGTTTGC i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16724480 133 + 184069350 acaaaGCTTGCCTCCACCTGGCTTTGAGCCAGGGAATAAGAAGAAAGAAGCTTTTGTTGTTGATGCTATTTATAACCCTGAATTACTCTTGTTAGAATGATGGGGCCAAAGCAGGGGAAGATCTTTTGTTTGC i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20765664 133 + 189454096 acaaaGCTTGCCTCCACCTGGCTTTGAGCCAGGGAATAAGAAGAAAGAAGCTTTTGTTATTGATGCTATTTATAACCCTGAATTACTCTTGTTAGAATGATGGGGCCAAAGCAGGGGAAGATCTTTTGTTTGC i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16361605 133 + 178775436 acaaagcttGCCTCCACCTGGCTTTGAGCCAGGgaataagaagaaagaagcttttgttATTGATGCTATTTATAAACCTGAATTACTCTTGTTAGAATAATGGGGCCAGAGCAGGGGAAGATCTTTTGTTTGC i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19848177 133 - 48547382 acaaaGCTTGCCTCCACCTGGCTTTGAGCCAGGGAATAAGAAGAAAGAAGCTTTTGTTATTGATGCTATTTATAACCCTGAATTACTCTTGTTAGAATAATGGGGCCAGAGCAGGGGAAGATCTTTTGTTTGC i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21204298 132 - 190850796 ATAATGCTTGCTTCCTCCTGGCCTTGAGCCAGCAAAGAAGAAGAAAGAAGCTTTCCTTATTGATGCTATTTATAACCCTGAATTAGTC-TGTTAGAATAATGAGGCCTGAGCAGGGGAGGATCTTTTGTTTGC i calJac3.chr3 C 0 C 0 s canFam3.chr3 3784834 122 - 91889043 ACAAAGC-TGCCTTCACCTGGCTTTTAGCCAGGGAAGAACA------AAACTTTTGCTATTGGTGCTAATTATATTCCTGAATCAC---TGTTAGAAGGATGGGGCCTAATCA-GGAATGGCCTCCTGCTTGC i canFam3.chr3 I 172 C 0 e mm10.chr5 49185950 1914 + 151834684 I a score=1076752.000000 s hg38.chr4_KI270790v1_alt 82574 340 + 220246 TTAGTACAAAT-GCGTCTTCCCCCTCAGTAAAACCTTACTTAGGATCATACTAAACAGTCACTGCAGGTACCAGGTGTGGAGCTAAAAGCGAGGAAAGGACCAAGATATTTGTAAAGAAGAAATGGAGAGG-AACTGAGTTCCAGGCAGAAGATTTGGAAGCGG-AAACCATCCTCCGAGGAGATGGAGAGCCAG-----TGGAGGATGGGTTACTTTCTATCTGAAGCCT-GTGGAGATTGAGAAGAAAATAAGTGTTTCAAGGGGTTTTGTCAAGTGAAACATCATGGGGGT--GGTGGTGGTGAATGTGAAGTCGTCCCACCTACAATACCTTTGATAAAATATTGTT s panTro4.chr4 21470880 340 + 193495092 TTAGTACAAAT-GTGTCTTCCCCCTCAGTAAAACCTTACTTAGGATCATACTAAACAGTCACTGCAGGTACCAGGTGTGGAGCTAAAAGCGAGGAAAGGACCAAGATATTTGTAAAGAAGAAATGGAGAGG-AATTGAGTTCCAGGCAGAAGATTTGGAAGCGG-AAACCACCCTCCGAGGAGATGGAGAGCCAG-----TGGAGGATGGGTTACTATCTATCTGAAGCCT-GTGGAGATTGAGAAGAAAATAAGTGTTTCAAGGGGTTTTGTCAAGTGAAACATCATGGGGGT--GGTGGTGGTGAATGTGAAGTCGTCCCACCTACAATACCTTTGATAAAATATTGTT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21646274 340 + 198332218 TTAGTACAAAC-GCATCTTCCCCCTCAGT-AAACCTTTCTTAGGATCACACTAAACAGGCACTGCAGGTACCAGGTGT-GAGCTAAAAGCTAGGAATGGACAAAGATATTTGTAAAGAAGAAATGGAGAGGAAATTGAGTTCCAGGCAGAAGATTTGGAAGTGGAAAACCACCCTCCGAGGAGATGGAGAGCCAG-----TGGAGGATGGGTTACTATCTATCTGAAGCCT-GTGGAGACTGAGGAGAAAATAAGTGTTTCAAGGGGTTTTGTCGAGTGAAACATCATGGGGGT--GGTGGTGGTGAATGTGAAGTCGTCCCACCTACAATACCTTTGATAAAATATTGTT i ponAbe2.chr4 I 218 C 0 s nomLeu3.chr20 20258281 340 - 85365473 TTGGTACAAAC-ACATCTTCCCCCTCAGTAAAACCTTACTTAGGATCATACTAAACAGCCACTGCAGGTACCAGGTGTGGAACTAAAAGCTGGGAAAGGACCAAGATATTTGTAAAGAAGAAATGGAGAGG-AATTGAGTTCCAGGCAGAAGATTTTGAAGTGG-AAACCACCCTCCGAGGAGATGGAGAGCCAG-----TGGAGGATGGGTTACTATCTATCTGAAGCCT-GTGGAGACTAAGGAGAAAATAAGTGTTTCAAGGGGTTTTGTCAAGTGAAACATCATGGGGGT--GGTGGTGGTGAACGTGAAGTCATCCCACCTACAATACCTTTGATAAAATATTGTT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16724613 338 + 184069350 TTAGTACAAACCGCATGTTCCCCCTCAGTAGAACCTTACTTAAGATCATACTAAACAGCCACTGCAGGTACCAGGTGTGGAGCTAAAAGCTGGGAAAGGACCAAGATATTTGTAAAGAAGAAATGGAGAGG-AATTGCATTCCAGGCAGAAGATTTGGAAGTGG-AAACCACCCTCTGAGGAGATGGAGAACCAG-----TGGAGGATGGGTTA---TCTATCTGAAGCCT-GTGGAGACTGAGGAGAAAATAAGTGTTTCAAGGGGTTTTGTCAAGTGAAACATCCTGGGGGT--GATGGTGGTGAATGTGAAGCCGTCCCACCTACAATACCTTTGATAAAATATTGTT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20765797 338 + 189454096 TTAGTACAAACCGCATGTTCCCCCTCAGTAGAACCTTACTTAAGATCATACTAAACAGCCACTGCAGGTACCAGGTGTGGAGCTAAAAGCTGGGAAAGGACCAAGATATTTGTAAAGAAGAAATGGAGAGG-AATTGCATTCCAGGCAGAAGATTTGGAAGTGG-AAACCACCCTCCGAGGAGATGGAGAACCAG-----TGGAGGATGGGTTA---TCTATCTGAAGCCT-GTGGAGACTGAGGAGAAAATAAGTGTTTCAAGGGGTTTTGTCAAGTGAAACATCCTGGGGGT--GATGGTGGTGAATGTGAAGCCGTCCCACGTACAATACCTTTGATAAAATATTGTT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16361738 338 + 178775436 TTAGTACAAACCGCATCTTCCCCCTCAGTAAAACCTTACTTAAGATCATACTAAACAGCCACTGCAGGTACCAGGTGTGGAGCTAAAAGCTGGGAAAGGACCAAGATATTTGcaaagaagaaatggagagg-aattgcattccaggcagaagattTGGAAGTGG-AAACCACCCTCCGAGGAGATGGAGAAGCAG-----TGGAGGATGGGTTA---TCTATCTGAAGCCT-GCGGAGactgaggagaaaataaatatttcacggGGTTTTGTCAAGTGAAACATCACGGGGGT--GATGGTGGTGAATGTGAAGCCGTCCCACCTACAACACCTTTGATAAAATATTGTT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19848310 338 - 48547382 TTAGTGCAAACTGCATCTTCCCCCTCAGTGAAACCTTACTTAAGATCATACTAAACAGCCACTGCAGGTACCAGGTGTGGAGCTAAAAGCTGGGAAAGGACCAAGATATTTGTAAAGAAGAAATGGAGAGG-AATTGCATTCCAGGCAGAAGATTTGGAAGTGG-AAACCACCCTCCGAGGAGATGGAGAACCAG-----TGGAGGATGGGTTA---TCTATCTGAAGCCT-GTGGAGACTGAGGAGAAAATAAGTGTTTCAAGGGGTTTTGTCAAGTGAAACATCCTGGGGGT--GATGGTGGTGAATGTGAAGCCGTCCCACCTACAATACCTTTGATAAAATATTGTT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21204430 339 - 190850796 TTAGTACAAACCACATCTTCCCCCTCAGTAAAATCTTAGTTAAGATCATACTCAACAGCCACTGCAGGTACCAGGTGTAGAGCTAATAGCTGGGAAAGGACCAAGACATTTGCAAAGAAGATATGCAGAGG-AA-TAAGTTCCAGACAGAAAATTTGGAAGTAG-AAACCACCCTCTGAGAAGATGGAGAGACAA-----TGGAGGATGCGTTGTTAGCTATCTGAAGCCT-GTGGAGACTAAGGACTAAAGAAGTGTTTCAAGGAGTTTTGTCAAGTGAAGCATCATGGTGA---GGTGGTGGTGAATATGAAGCCATCCAACCTACAACATCTTTGATAAAATATTGTC i calJac3.chr3 C 0 C 0 s canFam3.chr3 3784956 320 - 91889043 TTAGCACAAACCACATCTTCCCCTCAATCAAAGCCTTACTTAAGATAATGCCAAAGAAGGACAGGAGGTACCAGGTATGCAGCTAGAAGCTGAGAAAGAACCAAGACA-TTGTGAAGGAGATACGGAGAGT-----GAGTCCCAGGCAG---ATTTAAGGGTAG-AG--------CAAGGGAAGCTGAGGGCAGGAGGGCTGAGGGGTGGG------------GGCAGCCTGGGGGAGCCTGGGAGGAAGAGACGTGTCTCCTGTGATTCCAGCAGGTGAAACCTGATGGGGGTTGGGGGGCGGGGAGTATAAATCCCTCCC-CCTATGGGATCTCTGATAAGACGCTGGT i canFam3.chr3 C 0 C 0 e mm10.chr5 49185950 1914 + 151834684 I a score=1047777.000000 s hg38.chr4_KI270790v1_alt 82914 368 + 220246 CATtgatatggtttggctgtgtccccactcaaatctcatcttgaattgtagctcccataattctcacatgttgtgggagggacctggtgggagataattgcatcatgggggtcgtttcccccatactgtttttgtggtagtgaataagtctcagaagacctgatggttttataaggggaaaccactttcacttggttctcttttctctcttgtctgccgcgatgtaagacgtgcttttcaccttcggccatgatcatgaggcctccccagacac---atgcaact------------ataagtctattaaatctctttttctttataaattatcccgtctcgggtatgtctttatcagcagtgtgaaaatggactaatacaCC s panTro4.chr4 21471220 368 + 193495092 CATtgatatggtttggctgtgtccctactcaaatctcatcttgaattgtagctcccataattctcacatgttgtgggagggacctggtgggagataattgcatcatgggggtcgtttcccccatactgtttttgtggtagtgaataagtctcagaagacctgatggttttataaggggaaaccactttcacttggttctcttttctctcttgtctgccgcgatgtaagacgtgcttttcaccttcggccatgatcatgaggcctccccagacac---atgcaact------------ataagtctgttaaatctctttttgtttataaattatccagtctcgggtatgtctttatcagcagtgtgaaaatggactaatacaCC i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21646614 378 + 198332218 CATtgatatggtttggctgtgtcctcactcaaatctcatcttgaattgtagctcccataattcccacatgttgtgggagggacctggtgggagataattgcatcatgggggtggtttcccccatactgtttttgtggtagtgaataagtctcagaagacctgatggttttataaggggaaaccactttcacttggttctcttttctctcttgtctgccgccatgtaagatgtgcttttcaccttcggccatgatcatgaggcctccccagacac---gtgcagtctggggagatttaataagtctactaaa--tctttttctttataaattatccagtctcaggtatgtctttatcagcaatgtgaaaatggactaatacaCC i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20258621 367 - 85365473 CATtggtacggtttggctgtgtccccactcaaatctcatcttgaattgtagctcccataattcccacatgttgtgggagggacgtggtgggagataattgcatcatggggatggtttcccccatactgtttttgtggcagtgaataagtctcagaagacctgatggttttataaggggaaaccactttccctaggttctcttttctctcttgtctgccgccatgtaagatgtgcttttcaccttcagccatgatcatgaggcctccccagacac---gtgcaact------------ttaagttgattaaatctc-tttcctttataaattatccagtctcaggtatgtctttatcagcagtgtgaaaatggactaatacaCC i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16724951 370 + 184069350 CATtggtatggtttggctgtgtccccactcaaatctcatcttgaattgtagctcccataattcccacatgttgtgggagggacctggcgggagataattgcatcatgggagtggtttcccccatcctgtttctgtggtagtgaataattctcagaagatctgatggttttataaggggaaaccactttcacttgg-tctcttttctttcgtatctgccgccatgtaagatgtgcttttcaccttcggccataatcatgaggccttctcagccacgtggtgcaact------------gtgagtctgttaaacctctttttctttataaatcacccagtctcaggtatgtctttatcagcaatgtgaaaacggactaatacaCC i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20766135 370 + 189454096 CATtggtatggtttggctgtgtccccactcaaatctcatcttgaattgtagctcccataattcccacatgttgtgggagggacctggtgggagagaattgcatcatgggagtggtttcccccatcctgtttctgtggtagtgaataattctcagaagatctgatggttttataaggggaaaccactttcacttgg-tctcttttctttcgtatctgccgccatgtaagatgtgcttttcaccttcggccataatcatgaggccttctcagccacgtggtgcaact------------atgagtctgttaaacctctttttctttataaatcacccagtctcaggtatgtctttatcagcaatgtgaaaacggactaatacaCC i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16362076 367 + 178775436 cattggtatggtttggctgtgtccccactcaaatctcatcttgaattgtagctcccataattcccatatgttgtgggagggacctggtgggagataattgcatcatgggagtggtttcccccatcctgtttctgtggtagtgaataagtctcagaagatctgatggttttataaggggaaaccacTTTCACttgg-tctcttttctttcttgtctgccaccatgtaagatgtgcttttcACCTTCGGCCATAATCATGAGGCTTTCCCAGCCAC---GTGCAACT------------ATGAGTctgttaaatctctttttctttataaatcacccagtctcgggcatgtctttatcagcagtgtgaaaacggactaatacacc i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19848648 370 - 48547382 CATtggtatggtttggctgtgtccccactcaaatctcatcttgaattgtagctcccataattcccacatgttgtgggagggacctggtgggagataattgcatcatgggagtggtttcccccatcctgtttctgtggtattgaataattctcagaagatctgatggttttataaggggaaaccactttcacttgg-tctcttttatttcgtatctgctgccatgtaagatgtgcttttcaccttcagccataatcatgaggccttcccagccacgtggtgcaact------------atgagtctgttaaacctctttttctttataaatcacccagtctcaggtatgtctttatcagcaatgtgaaaacggactaatacaCC i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21204769 350 - 190850796 CATtgatatggtttgg-----------ctcaaatctcatcttgaattgtagtacccatcattcccacatgttgt----ggaacctggtgggaaataattgaatcatgggggcagtttccccca--cagtttttgtgatagtgaataaatctcacaaaatctgatggttttataagaggaaaccactttaacttggttcttttttctctcttgtctgacaccttgtaagacatgcttttcatcttccaccatgatcatgaggcct-cccagccat---gtggaact------------gtgagcccattaaacctcttttcctttataaatttccaagtctcgggtatgtctttatcagcagtgtgaaaacggactaatataCC i calJac3.chr3 C 0 C 0 e mm10.chr5 49185950 1914 + 151834684 I e canFam3.chr3 3785276 0 - 91889043 C a score=1711683.000000 s hg38.chr4_KI270790v1_alt 83282 532 + 220246 CATGAATATCTTCACACAATGTTCTAGAAAGAAGTTTCTTCCTGTTTCAAAATTAGCATAGGATGAAAGCCAGGCTTGTCTCAGAAAGCTGAGGGGAGGGCCACATCACCAAATTCTGCCATC-AAAGCCACTTTCCTTCAGTTCATTGGCTTTCCCAAGGTATGAAAGAAAA-----GTGTTTTC-TTTGATTGGTCCTTTTATTATCTACAGCTCCCTTGGAGC-----CTAGGTCTACTGTATTCATTCAAAAAGAG----------TTGGCAGATTGGGGATGACCCAAAATTACAGGATTTAGGACATTTTCTTAAAA-------TATACTACCATGCTG------TTTTTACTGCTTTAACAGCAAAGCATCCAGACAATGCAGGTTTTTAGGATATTGTGTTTTTCCAGAGAAATCAAATGAATTAGGTCCCCAGTGGTAAATATAAAAAGAAAAAGAGGACTTGTTCGATTTATAGCAAAACATATATTTAGCTGTaaaggagagaaagaaaaagacaacagaagagaaaag----aaaaAATGCATTTTAA-----GAGAGTAATAA s panTro4.chr4 21471588 532 + 193495092 CATGAATATCTTCACACAACGTTCTAGAAAGAAGTTTCTTCCTGTTTCAAAATTAGCATAGGATGAAAGCCAGGCTTGTCTCAGAAAGCTGAGGGGAGGGCCACATCACCAAATTCTGCCATC-AAAGCCACTTTCCTTCAGTTCATTGGCTTTCCCAAGGTATGAAAGAAAA-----GTGTTTTC-TTTGATTCGTCCTTTTATTATCTACAGCTCCCTTGGAGC-----CTAGGTCTACTGTATTCATTCAAAAAGAG----------TTGGCAGATTGGGGATGACCCAAAATTACAGGATTTAGGACATTTTCTTAAAA-------TATACTACCATGCTG------TTTTTACTGCTTTAACAGCAAAGCATCCAGACAATGCAGGTTTTCAGGATATTGTGTTTTTCCAGAGAAATCAAATGAATTAGGTCCCCAGTGGTAAATATAAAAAGAAAAAGAGGACTTGTTCGATTTATAGCAAAACATATATTTAGCTATAAAGGAGAGAAAGAAAAAGACAACAGAAGAGAAAAG----AAAAAATGCATTTTAA-----GAGAGTAATAA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21646992 532 + 198332218 CATGAATGTCTTCACACAATGTTCTAGAAAGAAGCGCCTTCCTGTTTCAAAATTAGCATAGGATGAAAGCCAGGCCTGTCTCAGAAAGCTGAGGGGAGGGCCACATCACCAAATTCTGCCATC-AAAGCCACTTTCCTTCAGTTCATTGGCTTTCCCAAGGTATAAAAGAAAA-----GTGTTTTG-TTTGATTGCTCCTTTCATTATCTACAGCTCCCTTGGAGC-----CTAGGTCTACTGTATTCATTCAAAAAGAG----------TTGGCAGACTGGGGATGACCCAAAATTACAGGATTGAGGACATTTTCTTAAAA-------TATACTACCATGCTG------TTTTTATTGCTTTAACAGCAAAGCATCCAGACAATGCAGGTTTTTAGGATATTGTGTTTTTCCAGAGAAATCAAATGAATTAGGTCCCCAGTGGTAAATATAAAAATAAAAAGAGGTCTTGTTCGATTTATAGGAAAACATATATTTAGCTATAAAGGAGAGAAAGAAAAAGACAACAGAAGAGAAAAG----AAAAAATGCATTTTAA-----GAGAGTAATAA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20258988 532 - 85365473 CATGAATGTCTTCACACAATGTTCTAGAAAGAAGTGCCTTCCTGTTTCAAAATTAGCATAGGATGAAAGCCAGGCTTGTCTCAGAGAGCTGAGGGGAGGGCCACATCACCAAATTCTGCCATC-AAAGCCACTTTCCTTCAGTTCGTTGGCTTTCCCAAGGTATAAAAGAAAA-----GTGTTTTC-TTTGATTGGTCCTTTCATTATCTACACCTCCCTTGGAGC-----CTAGGTCTACTGTATTCATTCAAAAAGAG----------TTGGCAGATTGGGGATGACCCAAAATTACAGGATTGAGGACATTTTCTGAAAA-------TATACTACCATGCTG------TTTTTACTGTTTTAACACCAAAGCAACCAGACAATGCAGGTTTTTAGGATATTGTGTTTTTCCAGAGAAATCAAATGAATTAGGTCCCCAGTGGTAAATATAAAAATAAAAAGAGGACTTTTTCGATTTACAGGAAAACATGTATTCAGCTATAAaggagagaaagaaaaagacaacagaagagaaaag----aaAAAATGCATTTTAA-----GAGAGTAATAA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16725321 533 + 184069350 CATGAATGTCTTCACACAATGTTCTAGATACAAGTGCCTTCCTGTTTCAAAATTAGCATAGGATGAAAGCCAGGCTTGTCTCAGAAAGCTGAGGGGAAGGGCGCATCACCAAATTCTGCCATC-AAAGCCTCTTTCCTTCAGTTCATTGGCTTTCCCAAGGTATAAAAGAAAA-----GTGTTTTC-TTTGACTGGTCCTTTCATTATCTACACCTCCCTTGGAGC-----CTAGGTCTACTGTATTCATTCAAAAAGAG----------TTGGCAGATTGGGGATGACCCAAAATTACAGGATTGAGGACCTTTTCTTAAAA-------TATACTACCATGCTG------TTTTTACTGCTTTAACAGCAAAGCATCCAGACAATGCAGGTTTTTAGGATATTGTGTTTTTCCAGAGAAATGAAATGAATAAGTTCCCCAGTGGTAAATATAAAAATAAAAAGAGGACTTGTTTGATTTGTAGGAAAACATGTATCTAGCGATAAAGGAGAGAAAGAAAAATGTAACAGAAGACAAAAG---AAAAAAATTCATCTTAA-----GAGAGTAATGA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20766505 533 + 189454096 CATGAATGTCTTCACACAATGTTCTAGATACAAGTGCCTTCCTGTTTCAAAATTAGCATAGGATGAAAGCCAGGCTTGTCTCAGAAAGCTGAGGGGAAGGGCGCATCACCAAATTCTGCCATC-AAAGCCACTTTCCTTCAGTTCATTGGCTTTCCCAAGGTATAAAAGAAAA-----GTGTTTTC-TTTGACTGGTCCTTTCATTATCTACACCTCCCTTGGAGC-----CTAGGTCTACTGTATTCATTCAAAAAGAG----------TTGGCAGATTGGGGATGACCCAAAATTACAGGATTGAGGACCTTTTCTTAAAA-------TATACTACCATGCTG------TTTTTACTGCTTTAACAGCAAAGCATCCAGACAATGCAGGTTTTTAGGATATTGTGTTTTTCCAGAGAAATGAAATGAATAAGTTCCCCAGTGGTAAATATAAAAATAAAAAGAGGACTTGTTTGATTTGTAGGAAAACATGTATCTAGCTATaaaggagagaaagaaaaatgtaacagaagacaaaag---aaaaaaATTCATCTTAA-----GAGAGTAATGA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16362443 533 + 178775436 catGAATGTCTTCACACAATGTTCTAGATAGAAGTGCCTTCCTGTTTCAAAATTAGCATAGGATGAAAGCCAGGCTCGTCTCAGAAAGCTGAGGGGAAGGGCACATCACCAAATTCTGCCATC-AAAGCCACTTTCCTTCAGTTCATTGGCTTTCCCAAGGTATAAAAGAAAA-----GTGCTTTC-TTTGATTGGTCCTTTCATTATCTACACCTGCCTTGGAGC-----CTAGGTCTACTGTATTCATTCAAAAAGAG----------TTGGCAGATTGGGGATGACCCAAAATTACAGGATTGaggacattttcttaaaa-------tatactaccatgctg------tttttacTACTTTAATAGCAAAGCATCCAGACAATGCAGGTTTTTAGGATATTGTgtttttccagagaaataaaatgaattagttCCCCAgtggtaaatataaaaataaaaagaggactTGTTTGATTTATAGGAAAACACGTATCTAGCtataaaggagagaaagaaaaatgtaacagaagacaaaag---aaaaaaattcatcttaA-----GAGAGTAATGA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19849018 533 - 48547382 CATGAATGTCTTCACACAATGTTCTAGACACAAGTGCCTTCCTGTTTCAAAATTAGCATAGGATGAAAGCCAGGCTTGTCTCAGAAAGCTGAGGGGAAGGGCGCATCACCAAATTCTGCCATC-AAAGCCACTTTCCTTCAGTTCATTGGCTTTCCCAAGGTATAAAAGAAAA-----GTGTTTTC-TTTGACTGGTCCTTTCATTATCTACACCTCCCTTGGAGC-----CTAGGTCTACTGTATGCATTCAAAAAGAG----------TTGGCAGATTGGGGATGACCCAAAATTACAGGATTGAGGACCTTTTCTTAAAA-------TATACTACCATGCTG------TTTTTACTGCTTTAACAGCAAAGCATCCAGACAATGCAGGTTTTTAGGATATTATGTTTTTCCAGAGAAATGAAATGAATTAGTTCCCCAGTGGTAAATATAAAAATAAAAAGAGGACTTGTTTGATTTATAGGAAAACATGTATCTAGCTATaaaggagagaaagaaaaatgtaacagaagacaaaag---aaaaaaATTCATCTTAA-----GAGAGTAATGA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21205119 531 - 190850796 CATGAATGTCTTCATACAATGTTCTAGATAGAAGTGCCTTCCTGCTTCAAAATTAGCATAGGATGAAAGCCAAGCTTATCTCAGAAAGCTGAGGGGAGGGCCACATAACCAAATTTTGTCATCAAAAGGCACTTTCCTTCAGTTCATTGGCTTTCCCAAGGTATGAAAGAAAA-----GCATTTTCTTTTGATTGGTCCTTTCATTATCCACACCTCCCTTGGAGT-----CTAGGACTACAGCATTCATTCAAAAAGAGTTTAC---TTTTAGCAGACTGGGGATGACCCAAAATTACAGGATTGAGGACATTTTGTTAAAA-------TATACTACCATGCTG------TTTTTACAACTTTAACAGCAAAGTATCCAGATAATGCAGGTTTTTAGGATATTGTGTTTCTCCAGAG-----AAATGAATTAGTTCTCCAGTTGTAAATATAAAAATAAAAAGAGGACTTGTT-AATTTATAGAAAAACATGTATTTAGCTATAAAGGAGAGAAAGAAAAAGACAACAGAAAAGA--------AAAAAGTGCATCCTAA-----GAGAGTAATGA i calJac3.chr3 C 0 C 0 s canFam3.chr3 3785276 526 - 91889043 CAAAAATATTTTTGCGCAACTTTCCAAGAAGAGGGA-----CTGCTTCAACATTTGCGCAGAATGAAAGCCGGGCTTCCCCCACAAAGC--------------------------CTGCCCTCCAAGGGCACTGCCCCTCA-TCCACAGACTTCCTCAAAGTGTTAAAAAAAAAAAGGGCACTTCT-TTTGATTGAGCCCTTCATTATCCACACCTCACTGCGGGCCCTGGCCTGGTCTACTGTATGCATTCGCTTAGGCCTTCCTCTTCCTGGAGGGCTGGGGGTGACCCGTAATGAAAGG-CTGAGGGAATTCTCTCAAAAAGAAACCAACAACAAGATGCTGAGGCTCCCTGTACTGCCTC-ACAGCAAGAGGCCCTGACATCACAGGCTTCCCTGATAGTGTGTCTTTCGGGAG-----AAACGCATCAGGTTCCCTGCAGTAAATACAAAAATGGAGAG---------TTTATTTACAGGAAAACAAACATGTTGCT-TAaaaggaaggaaaaagaagacaggcaaagagaagagaaaaaaaaagGGCATCTTGATTCGGGACGGTCATAA i canFam3.chr3 C 0 C 0 e mm10.chr5 49185950 1914 + 151834684 I a score=3437026.000000 s hg38.chr4_KI270790v1_alt 83814 996 + 220246 ATAATTATGAACTGTTGATTCAG---TTGGGAGGGTAAATTATTTCGGTACGTCTGAAAAATTCAGAAAGCTGTAAAATCACTAGTCAGCATGCCACTGACTATTCTG------------GAT-TAAAGCAGCACCGGTTACCATTAAATGAAAGGAGAGAACACGGAAGAATGTAATACTGTGTTTTATGCATAAACAGTGTTGCAAGTAC----TTACTACATGcaacaattttgtaagattga---ttttatacc------cattttagcattggggata---attgagtttcaaaa-aggttaatcagctagaccaGCTTGTATAGAGAACATGCATTTTAAGTTAACTGAAGAATAGTTGAACTCTTAG-TCTTTGCCAGGCTGTATACAAGATCAAggtcag--aaaactt----tgt---aaagcatcagatagtacatattttaggctttgcaagtcatacagtctctgatgcaatactcaaccctgcagtt-----gtagtacaaaactagctataggagat---atgt---------aaaa-aatgaga---------gtggttgtgtgccaataaaactttatttacaaaaccag----------------------------gcaggcagcagactggatttgg-cctggggtttatcaactcctATGATTGATGATGAGGGTATGATGGTGAGAAAGTCA----ACTCATTAATCCCTCACAGAG------CC-----TCTCTAATTCTAAAGACACTATTTCACCGTTTTCTTGCATCTGCTTTATTTAGACAGTGCTT-CCCCCC-----------AAAA----AGATCTGAGAT---------------TTTTAAGCTAAAAATGTTTAACTAAGAAAAGTAAATA-TTTGCAAGATCTACACATGAGCACCCTGGTTCTTTTGCATTCATGCACCAGTGGGGTCTCCCAACTCA--TCCAATTTACGAATTTTCAGTTTGTCTCCATGTCTTTCCACAGTTTCCAATTCCAAGTGCAAATATCCTCCTAGCTGATTTCCCATTAAACAGAGCCACATTATGACTCCTGGAAGACACATCAGGTTAG-----G-----ATTATTAGACTTAT-CTTCAGGGAACAGACATCTCAGAACA s panTro4.chr4 21472120 997 + 193495092 ATAATTATGAACTGTTGATTCAG---TTGGGAGGGTAAATTATTTTGGTACGTCTGAAAAATTCAGAAAGCTGTAAAATCACTAGTCAGCATGCCACTGACTATTCTG------------GAT-TAAAGCAGCACCGGTTACCATTAAATGAAAGGAGAGAACACGGAAGAATGTAATACTGTGTTTTATGCATAAACAGTGTTGCAAGTAC----TTACTACATGcaacaattttgtaagattga---ttttatacc------cattttagcattggggata---attgagtttcaaaa-aggttaatcagctagaccaGCATGTATAGAGAACATGCATTTTAAGTTAACTGAAGAATAGTTGAACTCTTAG-TCTTTGCCAGGCTGTATACAAGATCAAggtcag--aaaactt----tgt---aaagcatcagatagtacatattttaggctttgcaagtcatacagtctctgatgcaatactcaactctgcagtt-----gtagtacaaaactagctataggagat---atgt---------aaaa-aataaga---------gtggttgtgtgccaataaaactttatttacgaaaccag----------------------------gcaggcagcagactggatttgg-cctggggtttatcaactcctATGATTGACGATGAGGGTATGATGGTGAGAAAGTCA----ACTCATTAATCCCTCACAGAG------CC-----TCTCTAATTCTAAAGACACTATTTCACCGTTTTCTTGCATCTGCTTTATTTAGACAGTGCTTCCCCCCC-----------AAAA----AGATCTGAGAT---------------TTTTAAGCTAAAAATGTTTAACTAAGAAAAGTAAATA-TTTGCAAGATCTACACATCAGCACCCTGGTTCTTTTGCATTCATGCACCGGTGGGGTCTCCCAACTCA--TCCAATTTATGAATTTTCAGTTTGTCTCCATGTCTTTTCACAGTTTCCAATTCCAAGTGCAAATATCCTCCTAGCTGATTTCCCATTAAACAGAGCCACATTATGACTCCTGGAAGACACATCAGGTTAG-----G-----ATTATTAGACTTAT-CTTCAGGGAACAGACATCTCAGAACA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21647524 995 + 198332218 ATAATTATGAACTGTTGATTCAA---TTGGGAGGGTAAATTATTTCAGTATGTCTGAAAAATGCAGAAAGCTGTAAAATCACTAGTGAGCATGCCACTGACTATTCTG------------GAT-TAAAGCAGCACCGGTTACCATTAAATGAAAGGAGAGAACACGGAAGAATGTAATATTGTGTTTTATGCATAAACAGTGTTCCAAGTAC----TTACTACATGcaacaattttgtaagattga---ttttgtgcc------cattttagcattggggata---attgtgtttcaaaa-aggttaaTCACCTAGACCAGTGTGTATAGAGAACACGCATTTTAAGTTAACTGAAGAATAATTGAACTCTTAG-TGTTTGCCAGGCTGTATACAAGATCAgggtcag--aaaactc----tgt---aaagcatcagacagtacacattttaggctttgcaagtcatatagtctctgatgtaatactcaactctgcagtt-----gtagtacaaaactagctataggagat---atgt---------aaaa-aatgaga---------gtggttgtgtgccaataaaactttatttacaaaaccag----------------------------gcaggcagcagactggatttgg-cctggggtttatcaactcctATGATTGATGATGAGGGTATGATGGTGAGAAAGTCA----ACTCATTAATCCCTCACAGAG------CC-----TCTCTAATTCTGAAGACACTATTTCACTGTTTTCTTGCATCTGCTTTATTTAGACAGTGCTT-CCCCCA-----------AAAA----AGATCTGAGAT---------------TTTCAAGCTAAAAATGTTTAACTACGAAAAGTAAATA-TTTGCAAGATCTACACATCAGCACCCTGG-TCTTTTGCA-TCATGCACCAGTGGGGTCTCCCAACCCCATTCCAATACACGAATTTTCAGTTTGTCTCCATGTC-TTCCACAGTTTCCAATTCCAAGTGCAAATATCCTCCTAGCTGATTTCCCATTAAACAGAGCCACATTATGACTCCTGGAAGACACATCAGGTTAG-----G-----ATTATTAGACTTAT-CTTCAGGGAACAGACATCTCAGAACA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20259520 996 - 85365473 ATAATTATGAATTGTTGATTCAA---TTGAGAGGGTAAATTATTTCAGTATGTTTGAAAAATGCAGAAAGCTGTAAAATCACTAGTGAGCATGCCACTGACTATTCTG------------GAT-TAAAGCAGCACCGGTTACCATTAAATGAAAGGAGAGAATATGGAAGAATGTAATATTGTGTTTTATGCATAAACAGTGTTCCAAGTAC----TTACTACATGcaacaattttgtaagattga---ttttatgcc------cattttagcatcggggata---attgagactcataa-aggttaatcagctagaccaGCGTGTATAGAGAACACGCATTTTAAGTTCACTGAAGAATAGTTGAACTCTTAG-CCTATGCCAGGCTGTATACAAGATCAgggtcag--aaaactt----tgt---aaagcatcaaatagtacatattttaggctttgcaagtcatacagtctctgatgcaatactcaactctgcagtt-----gtagtacaaaactagctataggagat---aggt---------aaaa-aatgaga---------gtggttgtgtgccaataaaactttctttacaaaaccag----------------------------gcaggcagcagactggatttgg-cctggggtttaccaactcctATGATTGATGATGAGGGTATGATGGTGAGAAAGTCA----ACTCATTAATCCCTCACAGAG------CC-----TCTCTAATTCTAAAGACACTATTTCACTGTTTTCTTGCATCTGCTTTATTTAGGCAGTGCTT-CCCCCA-----------AAAA----AGATCTGATAT---------------TTTTAAGCTAAAAATGTTTAACTAAGAAAAGTAAATA-TTTGCAAGATCTACACATCAGCACCCTGGTTCTTTTGCATTCATGCACCAGTGGGGTCTCCCAACTTA--TCCAATTTATGAATTTTCAGTTTGTCTCTATGTCTTTCCACAGTTTCCAATTCCAAGTGCAAATATCCTCCTAGCTGATTTCCCATTAAACAGAGCCACATTATGGCTCCTGGAAGACACATCAGGTTAG-----G-----ATTATTAGACTTAT-CTTCAGGGAATAGACGTCTCAGAACA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16725854 998 + 184069350 ATAATTATGAACTGTTGATTCAA---TTGGGAAGGTAAATTATTTTGGTACGTCTG-AAAATACAGAAAGCTGTAAAATCACTAGTGAGCATGCCATTGACTGTTCTG------------GAT-TAAAGCAGCACCTGTTACCATTAAATGAAAGGAGAGAACAAGGAAGAATGTAATATTGTGTTTTATGCATAAACAGTGTTCCAAGTAC----TTACTACATGcaaccattttgtaagagtga---ttttatgcc------cattttagcactggggata---actgagtctcaaaa---gttaatcagcttgcccagggtGTGTAGAGAACATACAATTTAAGttcactgaagaattattgaactcttag-tttatgccaggctgtatgcaagatcagggtcag--aaaactt----tgt---aaagcaccagatagtatatattttaggctttgcaagtcatgcagtctctgatgcaatactcaactctgcagct-----gtagtaaaaaactagctgtaggagat---atgt---------aaaa-aatgaga---------gtggttatgtgccaataaaactttattttcaaaaccag----------------------------gcaggcaacagactggatttgg-cctggggtttatcaactcctatgattgatgatgagggtatgatggtgagaaagtca----actcattaatccctcacagag------cC-----TCTCTAATTCTAAAGACACTATTTCACTGTTTTCTTGCATCTGCTTTATTTAGACAGTGCTT-CCCCCC-----------AAAA----AGCTCTGAGAT---------------TTTTTACCTAAAAATTCTTAACTAAGAAAAGTAAATA-TTTGCAACATCTACACATCAGCACCCTGGTTCTTTTGCATTCATGCACCAGTGGGGTCTCCCAAGTCA--TCCAATGTATGAATTTTCAGTTTATCTCCATGTCTTTCCACAGTTTCCAATTCCAAATGCAAATATCCTTCTAGTTGATTTCCCATTAAACAGAGCCACATTATGACTCCTGGAAGACATATCAGGTTAG-----GAATATATTATTAGACTTGT-CTTCAGGGAACAGACATCTCAGAACA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20767038 998 + 189454096 ATAATTATGAACTGTTGATTCAA---TTGGGAGGGTAAATTATTTTGGTACGTCTG-AAAATACAGAAAGCTGTAAAATCACTAGTGAGCATGCCATTGACTATTCTG------------GAT-TAAAGCAGCACCTGTTACCATTAAATGAAAGGAGAGAACAAGGAAGAATGTAATATTGTGTTTTATGCATAAACAGTGTTCCAAGTAC----TTACTACATGcaacaattttgtaagagtga---ttttatgcc------cattttagcactggggata---actgagtctcaaaa---gttaatcagcttgcccagggtGTGTAGAGAACATACAATTTAAGTTCACTGAAGAATTATTGAACTCTTAG-TTTATGCCAGGCTGTATGCAAGATCAgggtcag--aaaactt----tgt---aaagcaccagatagtatatattttaggctttgcaagtcatgcagtctctgatgcaatactcaactctgcagct-----gtagtaaaaaactagctgtaggagat---atgt---------aaaa-aatgaga---------gtggttatgtgccaataaaactttatttacaaaaccag----------------------------gcaggcaacagactggatttgg-cctgGGATTTATCAACTCCTATGATTGATGATGAGGGTATGATGGTGAGAAAGTCA----ACTCATTAATCCCTCACAGAG------CC-----TCTCTAATTCTAAAGACACTATTTCACTGTTTTCTTGCATCTGCTTTATTTAGACAGTGCTT-CCCCAC-----------AAAA----AGCTCTGAGAT---------------TTTTTACCTAAAAATTCTTAACTAAGAAAAGTAAATA-TTTGCAACATCTACACATCAGCACCCTGGTTCTTTTGCATTCATGCACCAGTGGGGTCTCCCAAGTCA--TCCAATGTATGAATTTTCAGTTTATCTCCATGTCTTTCCACAGTTTCCAATTCCAAATGCAAATATCCTTCTAGTTGATTTCCCATTAAACAGAGCCACATTATGACTCCTGGAAGACACATCAGGTTAG-----GAATATATTATTAGACTTGT-CTTCAGGGAACAGACATCTCAGAACA i macFas5.chr5 C 0 I 180 s papAnu2.chr5 16362976 998 + 178775436 ATAGTTATGAACTGTTGATTCAA---TTGGGAGGGTAAATTATTTTGGTATGTCTG-AAAATACAGAAAGCTGTAAAATCACTAGTGAGCATGCCATTGACTATTCTG------------GAT-TAAAGCAGCACCTGTTACCATTAAATGAAAGGAGAGAACAAGGAAGAATGTAATATTGTGTTTTATGCATAAACAGTGTTCCAAGTAC----TTACTACATGCAACAATTTTGTAAGATTGA---TTTTACGAC------CATTTTAGCACTGGGGATA---ACTGAGTCTCAAAA---GTTAATCAGCTTGCCCAGGGTGTGTAGAGAACATACAATTTAAGTTCACTGAAGAATTATTGAACTCTTAG-TTTATGCCAGGCTGTATGCAAGATCAGGGTCAG--AAAACTT----TGT---AAAGCACCAGATAgtacatattttaggctttgcaagtCATGTAGTCTCTGATGCAATACTCAACTCTGCAGTT-----GTAGTAAAAAACTAGCTGTAGGAGAT---ATGT---------AAAA-AATGAGA---------GTGGttatgtgccaataaaactttatttacaaaaccag----------------------------gCAGGCAACAGACTGGATTTGG-CCTGGGGTTTATCAACTCCTATGATTGATGATGAGGGTATGATGGTGAGAAAGTCA----ACTCATTAATCCCTCACAGAG------CC-----TCTCTAATTCTAAAGACACTATTTCACTGTTTTCTTGCATCTGCTTTATTTAGACAGTGCTT-CCCCCC-----------AAAA----AGCTCTGAGAT---------------TTTTTACCTAAAAATTCTTAactaagaaaagtaaata-tttgcaacatCTACACATCAGCACCCCGGTTCTTTTGCATTCATGCACCAGTGGGGTCTCCCAAGTCA--TCCAATGTATGAATTTTCAGTTTATCTCCATGCCTTTCCACAGTTTCCAATTCCAAATGCAAATATCCTTCTAGTTGATTTCCCATTAAACAGAGCCACATTATGACTCCTGGAAGACACATCAGGTTAG-----GATTATATTATTAGACTTGT-CTTCAGGGAACAGACATCTCAGAACA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19849551 1001 - 48547382 ATAATTATGAACTGTTGATTCAA---TTGGGAGCGTAAATTATTTTGGTATGTCTG-AAAATACAGAAAGCTGTAAAATCACTAGTGGGCATGCCATTGACTATTCTG------------GAT-TAAAGCAGCACCTGTTACCATTAAATGAAAGGAGAGAACAAGGAAGAATGTAATATTGTGTTTTATGCATAAACAGTGTTCCAAGTAC----TTACTACATGcaacaattttgtaagagtga---ttttatgcc------cattttagcactggggata---actgagtctcaaaa---gtgaatcagcttgcccagggtGTGTAGAGAACATACAATTTAAGTTCACTGAAGAATTATTGAACTCTTAG-TTTATGCCAGGCTGTATGCAAGATCAgggtcag--aaaactt----tgt---aaagcaccagatagtacatattttaggctttgcaagtcatgcagtctctgatgcaatactcaactctgcagtt-----gtagtaaaaaactagctgtaggagat---atgt---------aaaa-aat--ga---------gtggttatgtgccaataaaactttatttacaaaaccag----------------------------gcaggaaacagactggatttgg-cctggggtttatcaactcctATGATTGATGATGAGGGTATGATGGTGAGAAAGTCA----ACTCATTAATCCCTCACAGAG------CC-----TCTCTAATTCTAAAGACACTATTTCACTGTTTTCTTGCATCTGCTTTATTTAGACAGTGCTT-CCCCCC-----------AAAA----AGCTCTGAGAT---------------TTTTTACCTAAAAATTCTTAACTAAGAAAAGTAAATA-TTTGCAACATCTATACATCAGCACCCTGGTTCTTTTGCATTCATGCACCAGTGGGGTCTCCCAAGTCA--TCCAATGTATGAATTTTCAGTTTATCTCCATGTCTTTCCACAGTTTCCAATTTCAAATGCAAATATCCTTCTAGTTGATTTCCCATTAAACAGAGTCACATTATGACTCCTGGAAGACACATCAGGTTAGGATTAGATTATATTATTAGACTTGT-CTTCAGGGAACAGACATCTCAGAACA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21205650 1013 - 190850796 ATAATTATGAACTGTTGATTCAG---TTGGGAGAGTAAATTATTTTGGTGTGTCTG-GAAATGCAGAAAGCTGTAAAATCAATAGTGAGCATGCCACTGACTACTCTG------------GTT-TAAAGCAGCATCTGTTACCATTAAATGAAAACAGAGAACAAGGAAGAACGTAATATTGTGTTTTATGCATAAACAGTGTTCCAAGTGC----TTACCACATGcaacaattttataagatcga---ttttatgcc------tgttttagcactgaggata---acagagtctcaaaa-aggttaatcagcttgcccagggtatatagcGAACATACATTTTAGGTTCACTGAAGAATTACTGAACTATTAG-TCTGTGCCAGGCTGTATACAAGATCATggtcag--aaaactt----tat---aaagtatcagatagtacatattttaggctttgcaaatcatacagtctctgaggtaatatttaactctgcaccc-----gtagtatgaaactaactataggatat---atgtaaaaaaaaaaaaa-aatgaga---------gtggctgtgtgccaataaaactttatttacaaaaccag----------------------------gcagacagcagactggatttggccctggggtttatcaacccctgTGATTAATGAGGAGGGCTCGATGGTGAGAAAGTCA----ACTCATTAATCCCTCACAGATTTAATCCC-----TCTCTAATTCTAAAGACACTGTTTCACTGTTTTCTTTCATCTGCTTTATTTAGACA-TGCTT-CCCGCCAAAAAAAAA-AAAAA----AAATCTGAGAT---------------TTTTTAGCTAAAAATGTTTAACTAGGAAAAGTAAATGTTTTGCAAGATCTACACATCAGCACCCTGGTTCTTTTGCATTCATGCACCAGTGGGGTCTTCCAACACA--TCCAATTTACGAATTTTCAGTTTGTCTCCATGTGTTTCCA--------GTTTCCAAGTGTAAATATACTCCTAGCTGATTTCCTGTTAAACAGAGCCACATTATGACTCCTGGAAAACACATCAGGTTAG-----G-----AGTATTAAACTATT-CTTCAGGGAACAGACGTCTCAGAACA i calJac3.chr3 C 0 C 0 s mm10.chr5 49187864 1003 + 151834684 ATCATTATTACTAATTGACTTAAATCTTGAGAG------TTACATCTGTATGCCTA-AACAATTAGGGGCCTGTGAAATCAGTAAATGCTATGCTGCT--CTATGCTGTCAACTAACACAGAT-TGAAGTAGAGCCAGCTATCATTACAGGAAAAGAGAGACAAGGAAAGAA---AATATTGTGTTTAATTTATAAGCTGTATGCCAAGCAC----ATGGTCTATA-GACAAAGTAGCAC-----A---TTGTATCCCAGTATGTATGTTAGCATCAAGAGTACCTACTGAGTCTTTGGG-ATTTTAGTATGTCTGCTGGAGCTTTACTGAAAATAT--ATTTTAAGGTCATTTAATAGTTACAAAAACTGTCA-TCCATGCTGTGCTATAGATACAATCAAAGCTAGCAAaaattt----tttttaaaagtgccaaataataaatattttagtctctgagagccatattgcctgagctgcagtacttaccttctgagct-----gaagtgaagaagcagtcatgggagatgacatat---------aaaaggatgagc---------gtggccttgtgagaggcagactttgtttacaaaactggatatgcagcaggcagcagacagcaggcagcaggcaacaggcCAGACATGG-CCTGAGGCTTACTATCCCATGTAAGAGATCACCA-GATAC-ATGGTGAGAACATTC----TCTCATCA-------GAAGAG------GCAAAAGCCACTAATCCCAAAGGTACCAT------GTTCATTTACATAT--TTTATTTAGACTGTGCCA-ACCCCAACCCCCAGATAAAAA----ACAGATGAAAT------------ATATATTTAGCTAACAATGTT----TATGCAAATTTAATA-TCAACAGGATCTGCA-------AACCTGTGTCTAT----------------TGAGGTCTCCTAACTCA--TACGA-ACAAATATTTTCACTCAGTTTTCATTTCTTCCCATAGATTATAGTCCCATTTGTAAA----CTTCTAGATAATTCCCTATTAAACCAAGCAGCAGTATAAGACCTGGGAAGCACATGAGATTAG-----G-----GTTATTAGACTTCA-TTTCAGGG----GACATCTCAGAACA i mm10.chr5 I 1914 C 0 s canFam3.chr3 3785802 1016 - 91889043 ATAATTGTAAACCACTGATTCAG---TTAGGAGAGTAGATTATTTTTGTAGGTCTG-AAAATTGAGAAAGCCGAAAACTCACTAGTTAGCATGTGACTGATTATTGTG------------GATAAAAAGCAGCACCTGCCACCATTAAGTGAAGGGAGAAAAGGAAGAAGAATGGAACGTTGTGTTTTATCTAGAAGTCACATTCCAAGCTCGGGGCTAGAACCTGCAAAGATCACggtagcttagcatcgttatatc------catgttaacgttgaggaaa---actgaatctcaggggacgttgatcagcttgcccaacgtatagagctggCCTATATTTCGAGTCCATCTAAGAGTTTCTGAACTCTCAGCTCTACGTCAGGCTGTCTACAAAGTCAGGCTCCC--aacattttcactgt---aaaataccagatggtaagtatttgaagctccgcatggccgacttccccgggggaaccactcaactttgcagtcacagagtggtttgcaagcagccacgggcaat---gtgc-------tgaggg-aatgggacgcactgccactgccgtgtgccaacgaaactttatttacaaaa--------------------------------gcaggcggccgaccaaatttgc-cctg-----------------tagTAGCTGATGC-GACATGATGGTGACAAAGTCACCTCCCTCCCTAATGTGTCATAGGG------TC-----TCTCTAATTCTAAAGGCCTTGTATC-------TCTTTTACCTCTTTTGTTTAGACAATACCT-CCCGCC-----------AAAAGGACAGATCTGAGATTTTTTTTTTCTTTTTTTTTTAGTTAAAGTGGTTTAACTGAGCAAATGAAGTA-TTTGCAA-ATCCACCCATCTGCGCCCCGGTTCTTTCTCTTTCATTCACCCCGGGGACTCCATAAGTCA--TGCAGTTTATAGAGTTTCAGTCTGTCTCCGTTTCTTCTCA--GTTTCTGAATCCAAGTGCAAACATCCTCCGAGCTGCTTTTCTATTACACAGAGCCACGTGATAGCTCCTGGAAGGCATATTAGGTTGG-----------TTCATCAGACTTGCGCTTCAGGGGACGGCAACCTCAGAACA i canFam3.chr3 C 0 C 0 a score=9261.000000 s hg38.chr4_KI270790v1_alt 84810 3 + 220246 TAT s panTro4.chr4 21473117 3 + 193495092 TAT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21648519 3 + 198332218 TAT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20260516 3 - 85365473 TAT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16726852 3 + 184069350 TAT i rheMac3.chr5 C 0 I 177 s papAnu2.chr5 16363974 3 + 178775436 TAT i papAnu2.chr5 C 0 I 177 s chlSab2.chr27 19850552 3 - 48547382 TAT i chlSab2.chr27 C 0 I 177 s calJac3.chr3 21206663 3 - 190850796 TAT i calJac3.chr3 C 0 C 0 s mm10.chr5 49188867 3 + 151834684 TAA i mm10.chr5 C 0 C 0 s canFam3.chr3 3786818 3 - 91889043 CAT i canFam3.chr3 C 0 C 0 e macFas5.chr5 20768036 180 + 189454096 I a score=7204.000000 s hg38.chr4_KI270790v1_alt 84813 5 + 220246 CAGAA s panTro4.chr4 21473120 5 + 193495092 CAGAA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21648522 5 + 198332218 CAGAA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20260519 5 - 85365473 CAGAA i nomLeu3.chr20 C 0 C 0 s calJac3.chr3 21206666 5 - 190850796 CAGAA i calJac3.chr3 C 0 C 0 s mm10.chr5 49188870 5 + 151834684 CAAGG i mm10.chr5 C 0 C 0 s canFam3.chr3 3786821 5 - 91889043 CAGAG i canFam3.chr3 C 0 C 0 e chlSab2.chr27 19850555 177 - 48547382 I e macFas5.chr5 20768036 180 + 189454096 I e rheMac3.chr5 16726855 177 + 184069350 I e papAnu2.chr5 16363977 177 + 178775436 I a score=344426.000000 s hg38.chr4_KI270790v1_alt 84818 89 + 220246 TTTATGAAGTTGATGCATTTGATTAACTGTATCATCGCTGCAGTCCTACAGCTGGATTATTGTTTTGCTGTCAACATTCGTCAGATC----T------T s panTro4.chr4 21473125 89 + 193495092 TTTATGAAGTTGATGCATTTGATTAACTGTATCATCGCTGCAGTCCTACAGCTGGATTATTGTTTTGCTGTCAACATTCTTCAGATC----T------T i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21648527 89 + 198332218 TTTATGAAGTTGATGCATTTGATTAACTGTATCATTGCTGCAGTCCTACAGCTGGATCATTGTTTCGCTGTCAATATTCTTCAGATC----T------T i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20260524 89 - 85365473 TTTATGAAGTTGATGCATTTGATTAACTGTATCATCGCTGCAGTCCTACAGCTGGATTATTGTTTCGCTGTCAACATTTTTCAGATC----T------T i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16727032 89 + 184069350 tttatgaagttgatgcATTTGATTAACTGTATCATCGCTGCAGTCCTACAGCTGGATTATTGTTTCGCTGTCAACATTCTTGAGATC----T------T i rheMac3.chr5 I 177 C 0 s macFas5.chr5 20768216 89 + 189454096 tttatgaagttgatgcATTTGATTAACTGTATCATCGCTGCAGTCCTACAGCTGGATTATTGTTTCGCTGTCAACATTCTTGAGATC----T------T i macFas5.chr5 I 180 C 0 s papAnu2.chr5 16364154 89 + 178775436 TTTATGAAGTTGATGCGTTTGATTAACTGTATCATCGCTGCAGTCCTACAGCTGGATTATTGTTTCGCTGTCAACATTCTTCAGATC----T------T i papAnu2.chr5 I 177 C 0 s chlSab2.chr27 19850732 89 - 48547382 tttatgaagttgatgcATTTGATTAACTGTATCATCGCTGCAGTCCTACAGCTGGATTATTGTTTCACTGTCAACATTCTTCAGATC----T------T i chlSab2.chr27 I 177 C 0 s calJac3.chr3 21206671 81 - 190850796 TTTATAAAGTTGATGCATTTGATTAACTGTATCATCGCTGCAGTCCTACAGCTGGACTATTGTTCCGCTGTCAACAT--------TC----T------T i calJac3.chr3 C 0 C 0 s mm10.chr5 49188875 92 + 151834684 --TCTAAAGCTAACGCATTTGAAAAACTACGTCGTCCTTACAGCTATCAGCCTAGAGTGTCAATTCACCGT-GACATCCTTTGAATC----TTTATTGT i mm10.chr5 C 0 C 0 s canFam3.chr3 3786826 93 - 91889043 TTTATAAAGTTGATGCATTTGATTAACTGCATCATCCCTGCAGCCCTATGCCTGGATCATCACTTCACTGTCAATATTCTTCAAATCAGGAT------T i canFam3.chr3 C 0 I 121 a score=243224.000000 s hg38.chr4_KI270790v1_alt 84907 70 + 220246 GATTTGAGCAT-CCTTGCAACACTATT--CCTCCTCTGTTCAGTTAGCTCCTGT----GTGGAGACAGGGACCCTTC s panTro4.chr4 21473214 70 + 193495092 GATTTGAGCAT-CCTTGCAATGCTATT--CCTCCTCTGTTCAGTTAGCTCCTGT----GTGGAGACAGGGACCCTTC i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21648616 70 + 198332218 GATTTGAGCAT-CCTTGCAACACTATT--CCTCCTCTATTCACTTAGCTCCTGT----GTGGAGACAGGGACCCTTC i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20260613 70 - 85365473 GATTTCAGCAT-CCTTGCAACACTATT--CCTCCTGTGTTCACTTAGCTCCTGT----GTGGATACAGGGACCCTTC i nomLeu3.chr20 C 0 I 375 s rheMac3.chr5 16727121 70 + 184069350 GATTTGAGCAT-CCTTGCAACACTATT--CCTCCTCTGTTCACTTAGCTCCTGT----GTGGAGACGGGGACCCTTC i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20768305 70 + 189454096 GATTTGAGCAT-CCTTGCAACACTATT--CCTCCTCTGTTCACTTAGCTCCTGT----GTGGAGATGGGGACCCTTC i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16364243 70 + 178775436 GATTTGAGCAT-CCTTGCAACACTATT--CCTCCTCTGTTCACTTAGCTCCTGT----GTGGAGACGGGGACCCTTC i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19850821 70 - 48547382 GATTTGAGCAT-CCTTGCAACACTATT--CCTCCTCTGTTCACTTAGCTCCTGT----GTGGAGACAGGGACCCTTC i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21206752 69 - 190850796 GATTTGAGCAT-CCTTGTAAGACTATT--CCCCCTCTGTTCATTTAGCTCCTGT----GTGGAGACAGGAACCCCC- i calJac3.chr3 C 0 C 0 s mm10.chr5 49188967 73 + 151834684 AATTGTAGCATATACTTCAAGGGTAATGGCTTCTTCATCTCATGTGACACTTAT----GTAAAGACTTTGGTCTCTA i mm10.chr5 C 0 C 0 s canFam3.chr3 3787040 74 - 91889043 GATTTGGGTAT-CCTTGTAAGATATTT--GCCCCTCTTTTCACTCAGCTCCTACCTAGATGGGGATAAGGATCCTTC i canFam3.chr3 I 121 C 0 a score=470669.000000 s hg38.chr4_KI270790v1_alt 84977 182 + 220246 GGGAAATGTTCTACTGCCTCCTATGTTCTGCTTTGAATCCTCCTCCC----CTGTTTCACATGTTAAAACAAATAATACATTTTGAATATTAATACACATTTTTGAAAATTAT--T-TTTCAG----------------TCTGTACAACCTTTT-GATTCTGGTTACTTCC-----CTGTCTTAGAAAGGGAATCAATAACCAAGAGTGTT s panTro4.chr4 21473284 182 + 193495092 GGGAAATGTTCTACTGCCTCCTATGTTCTGCTTTGAATCCTCCTCCC----CTGTTTCACATGTTAAAACAAATAATACATTTTGAATATTAATACACATTTTTGAAAATTAT--T-TTTCAG----------------TCTGTACAACCTTTT-GATTCTGGTTACTTCC-----CTGTCTTAGAAAGGGAATCAATAACCAAGAGTGtt i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21648686 182 + 198332218 AGGAAATGTTCTACTGCCTCCTATGTTCTGCTTTGAATCCTCCTCCC----CTGTTTCACATGTTAAAACAAATAATACATTTTGAACATTAATACACATTTTTGAAAATTAT--T-TTTCAG----------------TCTGTACAACCTTTT-GATTCTGGTTACTTCC-----CTTTCTTAGAAAGGGAATCAATAACCAAGAGTGtt i ponAbe2.chr4 C 0 C 0 s rheMac3.chr5 16727191 178 + 184069350 AGGAAATGTTCTCCTACCTCCTATGTTCTGCTTTGAATCCTCCTCCC------ATTTCACATATTAAAACAAAGAATACATTTTGAACATTA--ACACATTTCTGAAAATTAT--T-TTTCAG----------------TCTGTATAACCTTTT-GATGCCAATTACTTCC-----CTGTCTTAGAAAGGGAATCAATAACCAAGAGTCtt i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20768375 178 + 189454096 AGGAAATGTTCTCCTACCTCCTATGTTCTGCTTTGAATCCTCCTCCC------ATTTCACATATTAAAACAAAGAATACATTTTGAACATTA--ACACATTTCTGAAAATTAT--T-TTTCAG----------------TCTGTATAACCTTTT-GATGCCGATTACTTCC-----CTGTCTTAGAAAGGGAATCAATAACCAAGAGTCTT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16364313 178 + 178775436 AGGAAATGTTCTCCTGCCTCCTATGTTCTGCTTTGAATCCTCCTCCC------ATTTCACATATTAAAACAAAGAATACATTTTGAACATTA--Acacatttctgaaaattat--t-tttcag----------------tctgTATAACCTTTT-GATGCCGATTACTTCC-----CTGTCTTAGAAAGGGAATCAATAACCaagagtctt i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19850891 178 - 48547382 AGGAAATGTTCTCCTGCCTCCTATGTTCTGCTTTGAATCCTCCTCCC------ATTTCACATATTAAAACAAAGAATACATTTTGAACATTA--ACACATTTCTGAAAATTAT--T-TTTCAG----------------TCTGTATAACCTTTT-GATGCTGATTACTTCC-----CTGTCTTAGAAAGGGAATCAATAACCAAGAGTCTT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21206821 176 - 190850796 AGGAAATGTTCTATTGCCTCCTATGTTCTGCTCTGAATTCTCCTCCC----CTATTTCACATGTTAAAACAAATAATACATTTTGAACATTA----ATATTTTTGAA---TTT--T-TTTCAG----------------TCTGTACAACCCTTTAGATTCTGGTTACTTTC-----TTGTCATGGAAAGGGAATCAATAACCAAGAGTGTT i calJac3.chr3 C 0 C 0 s mm10.chr5 49189040 166 + 151834684 -GAGAATATTCTTGTGCTTTCTATGTCCTG-----------------------TGGTCACAGGTTAGAATAAAGTA-GTACTTTGAA-ATTAGCATGCTCTTTTCAACATTAT--TATTTAAA----------------TTTCTACAACCTTTG-GGTAATTTATCCTTTTTGCTGTTGTTTTAGAGGGAGAATCAATAGCCTAGAGGGTG i mm10.chr5 C 0 I 1 s canFam3.chr3 3787114 198 - 91889043 AGAGAATGTTCTGGTACCTCTTACATCCTGCTTCGAAAACTCATCCCATCCCCTGTCCACATGTTAAAACAGAGAA--CATTTTGAA-ATTAATACACATTTTTGAAAATTATAGT-TTACAAAACCAAAATTATCGTTTCTGTACAATCTTTT-ATTTGTCTATGCTTTT-----TTTCCTTAG---GGAAAAAAGTAATCAAGAGGGAC i canFam3.chr3 C 0 C 0 e nomLeu3.chr20 20260683 375 - 85365473 I a score=1033559.000000 s hg38.chr4_KI270790v1_alt 85159 303 + 220246 -TTTAAAATAAAGTTTCTATTATAATAATTATGATTTACTATTTTTATAGTACTATAATTTCAGAATTTCCTTAAAGAAATTAATTTCGAAGTTCACAACTTTCCCC-----TCAAAATGCAAATTGTAACAAAAATAAGAAA-----------------GAAAAAaatg---ataactaccatgtattacgtacttaataggtgccacagactgtgttaagtaccataaatggattgacttttttaCATGCAAACATAAAATTATAAAATTAGAGGTAAGCTTGAGAGCAAAATAATACCACAGTAAGTAA-----TTCAAGTGACAGTGCTG s panTro4.chr4 21473466 306 + 193495092 -tttaaaataaagtttctattataataattgtgatttattatttttataGTACTATAATTTCAGAATTTCCTTAAAGAAATTAATTTCCAAGTTCACAACTTTCCCC-----TCAAAATGCAAATGGTAACAAAAATAAGAAA-----------------GAAAAAAATGataataactaccatgtattacgtacttaataggtgccacagactgtgttaagtaccataaatagattgacttttttaCATGCAAACATAAAATTATAAAATTAGAGGTAAGTTTGAGAGCAAAATACTACCACAGTAAGTAA-----TTCAAGTGACAGTGCTG i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21648868 306 + 198332218 -tttaaaataaagtttctattataataattatgatttattatttttataGTACTATAATTTCAGAATTTCCTTAAAGAAATTAATTTCCAAGTTCACAACTTTCCCC-----TCAAAATGCAAATGGTAACAAAAATAAGAAA-----------------GAAAAAAATGataataactaccatgtattacgtacttaataggtgccacagactgtgttaaacaccataaatagattgacttttttaTATACAAACATAAAATTATAAAATTAGAGGTAAGCTTGAGAGCAAAATACTACCACAGTAAGTAA-----TTCAAGTGACAGTGCTG i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20261058 306 - 85365473 -TTCAAAATAAAGTTTCtattataataattatgatttattatttttatagtactataattTCAGAATTTCCTTAAAGAAATTAATTTCCGAGTTCACAACTTTCCCC-----TCAAAATGCAAATGATAACAAAAATAGGAAA-----------------GAAAAAACTGataataactaccatgtattacgtacttaataggtgccacagactgtgttaagtaccataaatagattgacttttttaTATGCAAACATGAAATTATAAAATTAGAGGTAAGCTTGAGAGCAAAATACTACCACAGTGAGTAA-----TTCAAGTGACAGTGCTG i nomLeu3.chr20 I 375 C 0 s rheMac3.chr5 16727369 306 + 184069350 -tttaaaattaagtttctattataataattatgatttattatttttatGCTACGATAATTTCAGAATTTCCTTAAATAAATTAATTTCCAGTTTCACAACTTTCCCC-----CCAAAATGCAAATGGTAACAAAAATAAGAAC-----------------GAAAAAAATGataacaactaccaggtattacgtacttaataggtgccacagactgtgttaagtaccataaatgtattgactTTTATATAGGCAAACATAAAATTACAAAATTAGGGGTAAGCTTGAGAGCAAAACACTACCACAGTAAGTAA-----TCCAAGTGGCAACGCTG i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20768553 306 + 189454096 -TTTAAAATTAAGTTTCtattataataattatgatttattatttttatGCTACGATAATTTCAGAATTTCCTTAAATAAATTAATTTCCAGTTTCACAACTTTCCCC-----CCAAAATGCAAATGGTAACAAAAATAAGAAC-----------------GAAAAAAATGataacaactaccaggtattacgtacttaataggtgccacagactgtgttaagtaccataaatgtattgactTTTATATATGCAAACATAAAATTACAAAATTAGGGGTAAGCTTGAGAGCAAAATACTACCACAGTAAGTAA-----TCCAAGTGGCAACGCTG i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16364491 306 + 178775436 -tttaaaattaagtttctattataataattatgatttattatttttatactactataatttCAGAATTTCCTTAAATCAATTAATTTCCAGTTTCACAACTTTCCCC-----CCAAAATGCAAATGGTAACAAAAATAAGAAC-----------------GaaaaaaaTGATAACAACTACCAGGTATTACGTACTTAATAGGTGCCACAGACTGTGTTAAGTACCATAAATGTATTGACTTTTTTATATGcaaacataaaattacaaaattagggGTAAGCTTGAGAGCAAAATACTACCACAGTAAGTAA-----TCCAAGTGGCAACGCTG i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19851069 306 - 48547382 -TTTAAAAGAAAGTTTCtattataataattatgatttattatttttatGCTACTATAATTTCAGAATTTCCTTAAATCAATTAATTTCCAGTTTCACAACTTTCCCC-----CCAAAATGCAAATGGTAACAAAAATTAGAAC-----------------GAACAAAATGATAACATCTACCAGGTATTATGTACTTAATAGGTACCACAGATTGTGTTAAGTACCATAAATGTATTGACTTTTATATATGCAAACATAAAATTATAAAATTAGGGGTAAGCTTGAGAGCAAAATACTACCACAGTAAGTAA-----TCCAAGTGGCAACGCTG i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21206997 323 - 190850796 -TTTAAAACAAGGTTTCTATTATAACAATTATGATTTGTTCTTTCTATAGTACTAGAATTTCAGAATTTTCTTAAAGAAATTAATTTCCAATTTCACAACTTTCCCC-----CCAAAATGCAAATATCAACAAAAATAAGAACATTTTGGCAACACTCCAAAAAGAAAAaatgataactaccatgtattgcacacttaataggtgccacagactgtgttaagtgccacgaattcattgacttttttGTATGCAAATATGCAATTATAAAATTAGAGGTAATCTTGAGAGCAAAATACTACCACAGTAAGCAA-----TGCAAATGACAGTGCTG i calJac3.chr3 C 0 C 0 s mm10.chr5 49189207 272 + 151834684 -TTTAAAATAA--TTTCTCTTACAATGAGTAAGATTTATTATTTCTATACTACTATAATTTCTGAAATTTCTTAATAAAGTTACTTTGCAATTTCAATATTTCCCCTG----GGAAAATGC-------------AATAAGCAC-------------------------TGGTAATAACTATAATCCATTAAGTACTCAA-AGGTGGCAC--ATTAGGTGGTCTACCCTAAATACATTGA---TGCTATAGGCAAACATGAA-----------TGAGGAGAAGTTCAGAACCAAACCCAACCATAGGAACTTACTGGTTCTAAGCAGCAAAGCTG i mm10.chr5 I 1 I 372 s canFam3.chr3 3787312 279 - 91889043 TTTT---ATGTAGTTTC---TATGATAATTACGATTTTTTATTTGT-TAGTACTTTACTTCCAGAAATTTCTTA----AATTGCTTTCCAATTTCACAACTTCCACGGAGAAAAAAAATGCAAAT---------AAGAAGAAA------------------AAAGAaatgatagtggctatcatgtattgcgtacttaacaggtgtcacagactgtatttagcaccatg--tatATTGATTTCTTTATTTGCGCACA----------AAAGCAGAGCAAAACCCATGACCGAAGTACAATTACCGTGAACAA-----CTCAGATGGCAGAGCTG i canFam3.chr3 C 0 I 34 a score=121749.000000 s hg38.chr4_KI270790v1_alt 85462 36 + 220246 T-CCTTTGTTGCTTCTACTACAAAGTGAATTATAGGG s panTro4.chr4 21473772 36 + 193495092 T-CCTTTGTTGCTTCTACTACAAAGTGAATTATAGGG i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21649174 36 + 198332218 T-CCTTTGTTGCTTCTACTACAAAGTGAATTATAGGG i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20261364 36 - 85365473 T-CCTTTGTTGCTTCTACTACAAAGTGAATTATAGGG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16727675 37 + 184069350 TCCCTTTGCTGCTTCTACTACAAAGTGAATTCTAGGG i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20768859 37 + 189454096 TCCCTTTGCTGCTTCTACTACAAAGTGAATTCTAGGG i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16364797 37 + 178775436 TCCCTTTGCTGCTTCTACTACAAAGTGAATTCTAGGG i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19851375 37 - 48547382 TCCCTTTGCTGCTTCTACTACAAAGTGAATTATAGGG i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21207320 36 - 190850796 T-CCTTTGTTGCTTGTACTACAAAGTGAATTATAGGG i calJac3.chr3 C 0 C 0 s canFam3.chr3 3787625 36 - 91889043 -CCCTCAGTTGCTTCTTCTGTAAAATGAAATCTAGGG i canFam3.chr3 I 34 C 0 e mm10.chr5 49189479 372 + 151834684 I a score=1916564.000000 s hg38.chr4_KI270790v1_alt 85498 526 + 220246 TTTGGCTTTTACTAGTTCAGATCTGTATTTTAGGTGTGAGTTC-AATAATTGTTCTGAGCAGAGTTGCTCTGGCCAAGCTGACTGCTG--------------------------TATTCTGTGTTAACTTTCC----------TGGTTTACCTACCAAAGGTGAAATGCTCTGGATGCCAGAAGAATTGAGTTTAAGAA-GCCAGGATTTGGAGATAACCTATAAATATTGGAGGCAGGCCCAAAGGAAGTTGTAGGGAGTACTAAATATAAGACTTGACGACAATAGAGACACAgccctattctcagggattttgattcac-tagatctgggtaggattcagtaataaata-------tcattttcaacaaaaatcctcagcgattctgctgcaggtggtcctcagatcacatcttaagaagtattgATGTAAACAGAACTGTTTCAAACTGCTTCTTTCT---TCATTCCCTTACTC---CCTCTGCTAACCAAGTCCTCCCACT-CAGTCCACTGAAAGG---GCCAGGCTTGGTGATGCTAAGGTATGGCTTCCTCCCTAAAGGAGATAAACAATACA s panTro4.chr4 21473808 526 + 193495092 TTTGGCTTTTACTAGTTCAGATCTGTATTTTAGGTGTGAGTTC-AATAATTGTTCTGAGCAGAGTTGCTCTGGCCAAGCTGACTGCTG--------------------------TATTCTGTGTTAACTTGCC----------TGGTTTACCTACCAAAGGTGAATTGCTCTGGATGCCAGGAGAATTGAGTTTAAGAA-GCCAGGATTTGGAGACAACCTATAAATATTGGAGGCAGGCCCAAAGGAAGTTGTAGGGAGTACTAAATATATGACTTGACGACAATAGAGACACAgccctattctcagggattttgattcac-tagatctgggtaggattcagtaataaata-------tcattttcaacaaaaatcctcagcgattctgttacaggtggtcctcagatcacattttaagaaatattgATGTAAACAGAACTGTTTCAAACTGCCTCTTTCT---TCATTCCCTTACTC---CCTCTGCTAACCAAGTCTTCCCACT-CAGTCCACTGAAAGG---GCCAGGCTTGGTGATGCTGAGGTATGGCTTCCTCCCTAAAGGAGATAAACAATACA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21649210 526 + 198332218 TTTGGCTTTTACTAGTTCAGATCTGTATTTTAGGTGTGAGTTC-AATAATTGTTCTGAGCAGACTTGCTCTGGCCAAGCTGACTGCTG--------------------------TATCCTGTATTAACTTGCC----------TGGTTTACCTACCAAAGGTGAATTGCTCTGGATGCCAGGAGAATTGAGTTTAAGAA-GCCAGGATTTGGAGATAACCTATAAATATTGGGGGCAGGCCCAAAGGAAGTTGTAGGGAGTACTAAATATATGACTTGACGACAATAGAGACACAgccctattctcaaggattttgattcac-taaatctgggtaggattcagtaataaata-------tcattttcaacaaaaatcctcagcaattctgttgcaggtggtcctcagatcacatcttaagaaatattgATGTAAATAGAACTGTTTCAAACTGCCTCTTTCT---TCATTCCCTTACTC---CCTCTGCTAACCAAGTCCTCCCACT-CTGTCCACTGAAAGG---GCCAGGCTTGGTGATGCTGAGGTATGGCTTCCTCCCTAAAGCAAGTAAACAATACA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20261400 526 - 85365473 TTTGGCTTTTACTAGTTCAGATCTGTATATTAGGTGTGAGTTC-AATAATTGTTCTGAGCAGACTTGCTCTGGCCAAGCTGACTGCTG--------------------------TATTCTGTATTAACTTGCC----------TGGTTTACCTACCAAAGGTGAATTGCTCTGGATGCCAGGAGAATTGAGTTTTAGAA-GCCAGGATTTGGAGATAACCTATAAATATTGGGGGCAGGCCCAAAGGAAGTTGTAGGGAGTACTAAATATATGACTTGACGACAATAGAGACACAgccttattctcagggattttgattcag-tagatctgggtaggattcagtaataaata-------tcattttcaacaaaaatcctcagcgattctgttgcaggtggtcttcagatcacatcttaagaaatattgATGTAAACAGAACTGTTTCAAACTGCTTCTTTCT---TCATTCCCTTACTC---CCTCTGCTAACCAAGTCCTCCCACT-CAGTCCACTGAAAGG---GCCAGGCTTGGTGATGCTGAGGTATGGCTTCCTCCCTAAAGCAGGTAAACAATACA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16727712 526 + 184069350 GTTGGCTTTTACTAGTTCAGATCTGTATTTTAGGTGTGAGCTC-AATAATTGTTCTGAGCAGACTCGCTCTGGCCAAGCTGACTGCTG--------------------------TATTCTGTATTAACTTACT----------TTGTTTACCTACCAAAGGTGAATCACTCTAGATGCCAGCAGAATTGAGTTTAAGAA-GACAGGGTTTGGAGATAACCTATAAACACTGGGGGCAGGCCCAAAGGAAGTTGTAGGGAGTACTAAATATATGACTTGATGACAATAGAGGCACAgccccattctcagggattttgatttag-tagacctgggtcggattcagtaataaata-------tcattttcaacaaaaatccttagtgattctgttgcaggtggtcctcagatcacatcttaagaaatattgATGTAAATAAAACTGTTTCAAACTGCCTCTTTCT---TCATTCCCTTACTC---CCTCGGCTAACCAAGTCCTCCCACT-CGGTCCACTGAAAGG---GCCAGGCTTGGTGATGCTGAGGTATGGCTTCCTCCCTAAAGCAGGTAAACAATACA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20768896 526 + 189454096 GTTGGCTTTTACTAGTTCAGATCTGTATTTTAGGTGTGAGCTC-AATAATTGTTCTGAGCAGACTCGCTCTGGCCAAGCTGACTGCTG--------------------------TATTCTGTATTAACTTACT----------TTGTTTACCTACCAAAGGTGAATCACTCTAGATGCCAGCAGAATTGAGTTTAAGAA-GACAGGGTTTGGAGATAACCTATAAACATTGGGGGCAGGCCCAAAGGAAGTTGTAGGGAGTACTAAATATATGACTTGATGACAATAGAGGCACAgccccattctcagggattttgattcaa-tagacctgggtcggattcagtaataaata-------tcattttcaacaaaaatccttagtgattctgttgcaggtggtcctcagatcacatcttaagaaatattgATGTAAATAAAACTGTTTCAAACTGCCTCTTTCT---TCATTCCCTTACTC---CCTCTGCTAACCAAGTCCTCCCACT-CGGTCCACTGAAAGG---GCCAGGCTTGGTGATGCTGAGGTATGGCTTCCTCCCTAAAGCAGGTAAACAATACA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16364834 526 + 178775436 GTTGGCTTTTACTAGTTCAGATCTGTATTTTAGGTGTGAGCTC-AATAATTGTTTTGAGCAGACTCGCTCTGGCCAAGCTGACTGCTG--------------------------TATTCTATATTAACTTACT----------TTGTTTACCTACCAAAGGTGAATCACTCTGGATGCCAGCAGAATTGAGTTTAAGAA-GCCAGGATTTGGAGATAACCTATAAACATTGGGGGCAGGCCCAAAGGAAGTTGTAGGGAGTACTAAATATATGACTTGATGACAATAGAGGCACAGCCCCATTCTCAGGGATTTTGATTCAA-GAGACCTGGGTCGGATTCAgtaataaata-------tcattttcaacaaaaatccTTAGTGATTCTGTTGCAGGTGGTCCTCAGATCACAACTTAAGAAATATTGATGtaaataaaactgtttcaaactgcctctttct---tcattctcttacTT---TCTCTGCTAACCAAGTCCTCCCACT-CGGTCCACTGAAAGG---GCCAGACTTGGTGATGCTGAGGTATGGCTTCCTCCCTAAAGCAGGTAAACAATACA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19851412 526 - 48547382 GCTGGCTTTTACTAGTTCAGATCTGTATTTTAGGTGTGAGCTC-AATAATTGTTCTGAGCAGACTCGCTCTGGCCAAGCTGACTGCTG--------------------------TATTCTGTATTAACTTACT----------TTGTTTACCTACCAAAGGTGAATTGCTCTGGATGCCAGCAGAATTGAGTTTAAGAA-GCCAGGATTTGGAGATAACCTATAAACATTGGGGGCAGGCCCAAAGGAAGTTGTAGGGAGTACTAAATACATGACTTGATGACAATAGAGGCACAgccccattctcagggattttgattcag-tagacctgggtcggattcagtaataaata-------tcattttcaacaaaaatccttagggattctgttgcaggtggtcctcagatcacaacttaagaaatattgATGTAAATAAAACTGTTTCAAACTGCCTCTTTCC---TCATTCCCTTACTC---CCTCTGCTAACCAAGTCCTCCCACT-TGGTCCACTGAAAGG---GCCAGGCTTGGTGATGCTGAGGTATGGCTTCCTCCCTAAAGCAGGTAAACAATACA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21207356 524 - 190850796 TTTGGCTTTTACTAGCACAGAACTATATTTTAGATGTGAGTTC-AATAATTGTTCTGAGCAGACGTACTCTGTCCAAGCTGACTGCTG--------------------------TATTCTGTATTAATTAACC----------TTGTTTAGCTACCAAAGGTGAATTGCTCTGGATGCCAGGAGAATTGAGTTTAAGAA-GCCAGGATTTGGAGATAACCTATAAATATTGGGGGCAGGCCCAAAGGATGTTGTAGGGAGTACTAAGTACATGACTTAATGACAGTAGAGACACAATcccattcccagggattttaattcag-tagatctaggtaggattcagtaataaata-------ccatcttcaacaaaaattcttagtgattctgttaca-gttgtcctcagactacattttaagaaacactgATACAAATGGAACTGTTT-GAACTGCCTCTTTCT---TCCATCCTTTACTC---CCTCTGCTAACCAAGTCCTCCCACT-CAGTCCACTGAAAGG---GTCAGGCTTGGTGATGCTGAGGTATGACTCTCTCCCTAAAGCAGGTAAACAATACA i calJac3.chr3 C 0 C 0 s mm10.chr5 49189851 521 + 151834684 TCTGACATTTTTAAGTGTAATTCTGT-TCTAAGTCGGGCACTCAAATCGTTGTTGGAAGCAAGTTTGCTCAGGCCAAGATATCTGGTGCACGATTGATGTTTAtttgtttgttttgttttgttttgttttgttGTTGCTATTGTTGTTTGCCTAACAAAGGTGAATTATTCCAGGTGC----AGAA---ATTCTGAGAATGTCAGAATTCTGAGCC-------AAATATTGTAGATAAGCTCAAGGAATCTTCCATGTAGCATTAAATA-----------------GGAAACACAGTCCT------TAAGATTTTGATCTAG-CATATCTGTATCATATTCAGTAGAACATG-------TATATTTTAGTAGAAGTCC---------CTACTGCATATGGCACTCAAATCACATTGT-ATATGCATT--TTTAAGTATTATTAACTCAGACTGCTTTTTTTG---TTGTTGTTGTTCTTTAACTTCTGCTGGCCAGCTCCTCTTTGTGCCCTCCTATTATAGGAATGCTTGGTATAGTCACATAAAAGTACTGTTTCCTCGCCAAATCTTATGGATAGTACA i mm10.chr5 I 372 I 732 s canFam3.chr3 3787661 528 - 91889043 TTTGGATTTTATTAGTGCAGTTCTGTTTTTCCAGTGTGAATTC-ATTAACTATTTTGAGCAGACGTGCTCTGACCAAGCTGACTTCTG--------------------------TCTTC-------ACTTGCC----------TTGTTCACCTACC-AAGGTGAATTGTTCCAGGTGCTAAGAGACTTGACTTTAAGAG-ACCAGGATTTTGAACTAACCTATAAAAATTGGGGGCAGACTCAAAGAAGGTTCTAGGGAGTTCTAAATATATGACTTAATTACAAAGGAGCTATATGcccattctcagggatgttgattaagttagatctcagtagtattaaggagtgtacattattttttatttttaacagaaattcctagtgatttggtttcaggtggtcctgagatcacatttttaaaaATATGGATCTAAACAGAACTGTCTGAAACCGCCTCTCTCTTTCTCAGTCCTTTTTCT---CTCCTGCCAACCAGGTCCTCCCATT-AAGTCCACCCAGAGG---GCCTGGTCTAATCGTGCTGAGGTATTGCTTTCTCCCTAAAGCAGATAAATGATAC- i canFam3.chr3 C 0 C 0 a score=591638.000000 s hg38.chr4_KI270790v1_alt 86024 190 + 220246 AAAACTTTCATGCTGAGCCAAAATGTTCACTTAATATCAACTTGTAACAGTCTCTTGTATTTTGTGTCTA---GATCCTTGATCCAAAACTACCTAAATTTGGAATGAAGCTGCTCAAACTTTCATAATTACTGACATTATTAAGATTTTAAATCTGTATAGAACTAAAGTTTTACttttttaattgatgcat s panTro4.chr4 21474334 190 + 193495092 AAAGCTTTCATGCTGAGCCAAAATGTTCACTTAATATCAACTTGTAACAGTCTCTTGTATTTTGTATCTA---GATCCTTGATCCAAAACTACCTAAATTTGGAATGGAGCTGCTCAAACTTTCATAATTACTGACATTATTAAGATTTTAAATCTGTATAGAGCTAAAGTTTTACttttttaattgatgcat i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21649736 190 + 198332218 AAAGCTTTTACGCTGAGCCAAAATGTTCACTTAATACCAACTTGTAACAGTCTCTTGTATTTTGTATCTA---GATCCTTGATCCAAAACTATCTAAATTTGGAATGAAGCTGCTCAAACTTTCATAATTACTGACATTATTAAGATTTTAAATCTGTATAGAACTAAAGTTTTAAttttttaattgatgcat i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20261926 190 - 85365473 AAAGCTTTTAGGCTGAGCCAAAATGTTCACTTAATATCAACTTGTAACAGTCTGTTGTATTCTGTATCTA---GATCCTTGATCCAAAACAATCTAAATTTGGAACAAAGCTGCCCAATCTTTCTTAATTACTGACATTATTAAGATTTTAAATCTGTATAGAACTAAAGTTTTAAttttttaattgatgcct i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16728238 193 + 184069350 AAAGCTTTTACACTGAGCCAAAATGTTCACTTAATATCAACTTGTAACAGTCTCTTGTATTTTGTACCTAGATGATCCTTGATCCAAAACAATTTAAATTTAGAACAAAGCTGCCCATACTTTCTTAATTACTGACATTATTAAGATTTTAAATCTGTATAGAACTAAAGTTTTAAttttttaattgatgcat i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20769422 193 + 189454096 AAAGCTTTTACACTGAGCCAAAATGTTCACTTAATATCAACTTGTAACAGTCTCTTGTATTTTGTACCTAGATGATCCTTGATCCAAAACAATTTAAATTTAGAACAAAGCTGCCCATACTTTCTTAATTACTGACATTATTAAGATTTTAAATCTGTATAGAACTAAAGTTTTAAttttttaattgatgcat i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16365360 193 + 178775436 AAAGCTTTTATGCTGAGCCAAAATGTTTACTTAATATCAACTTGTAACAGTCTCTTGTATTTTGTACCTAGATGATCCTTGAtccaaaacaatttaaatttggAACAAAGCTGCCCATACTTTCTTAATTACTGACATTATTAAGATTTTAAATCTGTATAGaactaaagttttaattttttaattgatgcat i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19851938 193 - 48547382 AAAGTTTTTATGCTGAGCCAAAATGTTCACTTAATATCAACTTGTAACAGTCTCTTGTATTTTGTACCTAGATGATCCTTGATCCAAAACAATTTCAATTTGGGACAAAGCTGCCCATACTTTCTTAATTACTGATATTATTAAGATTTTAAATCTGTATAGAACTAAAGTTTTAAttttttaattgatgcat i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21207880 186 - 190850796 AAAGCTTTCACGCTGAGCCAAGATGTTCACTTAATATCAACTTGTAATGGTCTCTTGTATTTTGTATGCA---GGTCCTTGATCCAAACCAATCTAAATTTGGAACAAA---GACCAAACTTTCTTAATTACTGACATTACTAAGATTTTATATCTGTATATAACTAAAGTTTTAA-tttttaattaatacat i calJac3.chr3 C 0 C 0 s canFam3.chr3 3788189 137 - 91889043 AAAGCTCTCAGGCTGAGGCAAGGAGTTGATTCAATATCAACTTATGACAACTTTTTGTGTTTTGTGCCTA---GATCCTTCATCCAGAGCAATCTAAATTTTGAGCA---------ATAATTTCTGAATTATTGACGTT--CAAG------------------------------------------GTGCAT i canFam3.chr3 C 0 C 0 e mm10.chr5 49190372 732 + 151834684 I a score=651330.000000 s hg38.chr4_KI270790v1_alt 86214 226 + 220246 aatagatgtacatattttgggggtacacgtgctagtttgacacattcatataatgtat-------aaattggtgtaattgggctattcatcacc----ttattta--------ctttttatttgagaaatattcaaattattctcttctagctattttgaaatgtacaatagattagcgtaaactatagtcatcctactgatcagttgaataccagtta-tcatttctcctatctaactgtgtata s panTro4.chr4 21474524 226 + 193495092 aatagatgtacatattttgggggtacatgtgatagtttgatacattcatataatgtat-------aaattggtgtaattgggctattcatcacc----ttattca--------ttttttatttgagaaatattcaaattattctcttctagctattttgaaatgtacaatagattagcgtaaactatagtcatcctactgatcagttgaataccagtta-tcatttctcctatctaactgtgtata i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21649926 223 + 198332218 aatagatgtacatattttgggggtacacgtgatagtctgatacattcatataatgtat-------aaattggtgtaattgggctattcatcacc----ttattta--------ttttttatttgagaaatattcaaattattctcttctagctgttttgaaatatacaatagattagcgtaaactatagtcatcctgctgatcagttgaataccagtt----atttctcctgtctaactgtgtata i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20262116 232 - 85365473 aatagatgtacatattttgggggtacatgtgataatttgatacattcatataatgtat-------aaattggtgtaattgggctattcaccaccataaatatttatc-----tttttttatttgagaaat-ttcaaattattctcttctagctattttgaaatgtacaatagattagcgtaaactatagtcatcctactgatcagctgaacaccagtta-tcatttctcctatctaactgtgtgta i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16728431 228 + 184069350 aatagatgtacatattttgggggtacatgtgatcatttgatacattcatataatgtat-------aaattggtgtaattgggttattcatcacc----ttaaatatc------ttttttatttgagaaatattcaaattattctcttctagctattttgaaatgtacaatagattagcataaactatagtcatcctactgatcagttgaataccagtta-tcatttctcctatataactgtgtata i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20769615 228 + 189454096 aatagatgtacatattttgggggtacatgtgatcatttgatacattcatataatgtat-------aaattggtgtaattgggttattcatcacc----ttaaatatc------tcttttatttgagaaatattcaaattattctcttctagctattttgaaatgtacaatagattagcataaactatagtcatcctactgatcagttgaataccagtta-tcatttctcctatataactgtgtata i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16365553 229 + 178775436 aatagatgtacatattttgggggtacatgtgatcatttgatacattcatataatgtat-------aaattGGTGTAATTGGGTtattcatcacc----ttaaatatc-----tttttttatttgagaaatattcaaattattctcttctagctattttgaaatgtacaatagattaGCAtaaactatagtcatcctactgaTCAGTTGAATACCAGTTA-TCATTTCTCCTATATAACTGTGTATA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19852131 228 - 48547382 aatagatgtacatattttgggggtacatgtgatcatttgatacattcatataatgtat-------aaattggtgtaattgggttattcatcacc----ttaaatatc------ttttttatttgaggaatactcaaattattctcttctagctattttgaaatgtacaatagattagcataaactatagtcatcctactgatcagttgaataccagtta-tcatttctcctatctaactgtgtata i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21208066 239 - 190850796 aatagatgtacatattttgggcatacatgggataattttatacattcatatgatatataaagatcaaattgg-gtaattgggctattcatcaca----ttaaatatttatcatttttttatttgagaaatattcaaattattctcttttagttattttgaaatgtacaatagattagtgtaaactatagtcctcctactgatcagttgaataccagttattcaattctcctatctaac--tgtata i calJac3.chr3 C 0 C 0 e mm10.chr5 49190372 732 + 151834684 I e canFam3.chr3 3788326 0 - 91889043 C a score=554670.000000 s hg38.chr4_KI270790v1_alt 86440 178 + 220246 cttgtacccactaatcaacttctcttaaagttcttcttattttccagc--------------------------------------cATGCCTAGAATCTTGACCTAGTACTGG-TAAACACTCATGCTCTGCATGTGTTTACAACACTTTCGATTTCCCCATGGTTGTGAGCTGTTCCTCTGAATTGA-CACTTGGATAGATGTCCTCCAA-----TA-CCCA s panTro4.chr4 21474750 178 + 193495092 cttgtacccactaatcaacttctcttAAAGTTCTTCTTATTTTCCAGC--------------------------------------CATGCCTAGAATCTTGACCTAGTACTGG-TGAACACTCATGCTCTGCATGTGTTTATAACACTTTCGATTTCCCCAAGGTTGTGAGCTGTTCCTCTGAATTGA-CACTTGGACAGATGTCCTCCAA-----TA-TCCA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21650149 175 + 198332218 cttgtacccactaatcaacttctcttAAAG---TTCTTATTTTCCAGC--------------------------------------CATGCCTAGAATCTTGACCTAGTACTTG-TGAACACTCATGCTCTGCATGTGTTTATAACACTTTCGATTTCCCCATGGTTGTGAGCTGTTCCTCTGAATTGA-CACTTGGATAGATGACCTCCAA-----TA-CCCA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20262348 178 - 85365473 cttgtacccactaatcaacttctcttAAAGCTCTTCTTATTTTCCAGC--------------------------------------CATGCCTAGAATCTTGACCTAGTACTGG-TGAACACTCGTGCTCTGCATGTGTTTATAACACTTTTGATTTCTCCATGGTTGTGAGCTGTTCCTCTGAATTGA-CACTTGGATAGATATCCTCCAA-----TA-CCCA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16728659 216 + 184069350 cttgtatccactaatcaacttctcttAAAGCTCTTCTTATTTTCCAGCCCACTAATCAACTTCTCTTAAAGCTCTTATTTTCCAGACATGCCTAGAATCTTGACCTAGTACTGG-TGAACACTCATGCTCTGCATGTGTTTATAACACTTTTGATTTCTCCATGGTTGTGAGCTATTCCTCTGACTTGA-CACTTGGATAGACATCCTCCAA-----TA-CCCA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20769843 178 + 189454096 cttgtatccactaatcaacttctcttAAAGCTCTTCTTATTTTCCAGC--------------------------------------CATGCCTAGAATCTTGACCTAGTATTGG-TGAACACTCATGCTCCGCATGTGTTTATAACACTTTTGATTTCTCCATGGTTGTGAGCTATTCCTCTGACTTGA-CACTTGGATAGACATCCTCCAA-----TA-CCCA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16365782 178 + 178775436 CTTGTATCCACTAATCAACTTCTCTTAAAGCTCTTCTTATTTTCCAGC--------------------------------------CATGCCTAGAATCTTGACCTAGTACTGG-TGAACACTCATGCTCTGCATGTATTTATAACACTTTTGATTTCTCCATGGTTGTGAGCTATTCCTCTGACTTGA-CACTTGGATAGACATCCTCCAA-----TA-CCCA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19852359 178 - 48547382 cttgtatccactaatcaacttctcttAAAGCTCTTCTTATTTTCCAGC--------------------------------------CATGCCTAGAATCTTGACCTAGTACTGG-TGAACACTCATGCTCTGCATGTGTTTATAACACTTTTGATTTCTCCATGGTTGTGAGCTATTCCTCTGACTTGA-TACTTGGATAGACATCCTCCAA-----TA-CCCA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21208305 178 - 190850796 cttgtacccactaaacaacttctcttAAAGCCCTTCTTA-TTTCCAGC--------------------------------------CATGCCTAGAATCTTGACTTAGTACGGG-TCAACACACGTGTTTTGCATGTGTTTATAACACTTGTGATTTCTCCATGGTTATGAGCTATTCCTCTGACTTGA-CAGTTGGCTAGACATCCTCCAA-----TACCCCA i calJac3.chr3 C 0 C 0 s canFam3.chr3 3788326 147 - 91889043 -----------------------------------CTTGTTTTCTAGC--------------------------------------TTTGCCTATATTCCTGACCAAGGACTAGAAAAACACCCATGTAGTCCATGTCCTCATCGTACTTTTG-TTTCTACATGGTTGTGAATCATTCTTCAAATCTGAGTTCCTGGATAGACCTCCTCCAGGCTACTA-CA-- i canFam3.chr3 C 0 C 0 e mm10.chr5 49190372 732 + 151834684 I a score=307421.000000 s hg38.chr4_KI270790v1_alt 86618 96 + 220246 TGTTGTATT-------TCATTTCCATCATGAATACTTGT------GTATGAGCTCCTTGCTACATCTAT-AAA---AT----TGGATTTCCAGCCTTG-CCTTATCTATCCTTGCTCA s panTro4.chr4 21474928 96 + 193495092 TGTTGTATT-------TCATTTCCATCATGAATACTTGT------GTATGAGCTCCTTGCTACATCTAT-AAA---AT----TGGATTTCCAGCCTTG-CCTTATCTATTCTTGCTCA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21650324 96 + 198332218 TGTTGCATT-------TCATTTCCATCATGAATACTTGT------GTATGAGCTCCTTGCTACATCTAT-AAA---AT----TGGATTTCCAGCCTTG-CCTTATCTATCCTTGCTCA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20262526 96 - 85365473 TGCTGCATG-------TCATTTCCATCATTAATCCTTGT------GTATGAGCTCCTTGCTACATCTAT-AAA---AT----TGGATTTCCAGCCTTG-CCTTATCTCTCCTTGCTCA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16728875 102 + 184069350 TACTGTATT-------TCATTTCCATCATGAATACTTGTGTATGAGTATGAGCTCCTTACTACATCTAT-AAA---AT----TGGATTTCTAGCCTAG-ACTCATCTCTCCTTGCTCA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20770021 103 + 189454096 TACTGCATT-------TCATTTCCATCATGAATACTTGTGTATGAGTATGAGCTCCTTACTACATGTATAAAA---AT----TGGATTTCTAGCCTAG-ACTCATCTCTCCTTGCTCA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16365960 102 + 178775436 TACTGCATT-------TCATTTCCATCATGAATACTTGTGTATGAGTATGAGCTCCTTACTACATCTAT-AAA---AT----TGGATTTCTAGCCTAG-ACTCATCTCTCCTTGCTCA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19852537 102 - 48547382 TGCTGCATT-------TCATTTCCATCATGAATACTTGTGTATGAGTATGAGCTCCTTGCTACATCTAT-AAA---AT----TGGATTTCTAGCCTAG-ACTCATCTCTCCTTGCTCA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21208483 96 - 190850796 TGCTGCATT-------TCATTTACATTGTGACTACTTGT------GTGTGAGCTCCTTGCTACATATAT-AAA---AT----TGAATTTCCAGCCTTG-GCTTATCTCTCCTTGCTTA i calJac3.chr3 C 0 C 0 s mm10.chr5 49191104 106 + 151834684 TGTTGTACTCTCAAGATAGTGTTCAACAATAGTACTTGT------TTATAAGTTTCTTGCTTCATGTAT-AAA---ATCTTCTGTGCTTTCACACTA--ACATATCTCCCCTTACTTA i mm10.chr5 I 732 I 5438 s canFam3.chr3 3788473 98 - 91889043 AGCTCTATT-------CTGTTTCCACCAGGAGTACTTGT------TTCCAGAATCCTTGTCACATCCAT-AAACACCC----TCTATTCCCAGCCATGCACTTGCCTCTTC--GCTTA i canFam3.chr3 C 0 C 0 a score=140938.000000 s hg38.chr4_KI270790v1_alt 86714 46 + 220246 GGTACCTGCTAATAGACATCTCCTCTTGCAAATCCCACAAAGACAC s panTro4.chr4 21475024 46 + 193495092 GGTACCTGCTAATAGACATCTCCTCTTGCAAATCCCACAAAGACAC i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21650420 46 + 198332218 GGTACCTGCTAATAGACATCTCCTCTTGCAAATTCCACAAAGATAC i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20262622 46 - 85365473 GCTACTGGCTAATAGACATCTCCTCTTGCAAATCCCACAAAGATAC i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16728977 46 + 184069350 GCTACTGGCTAATAGACATCTCCCCTTGCAAATCCCATAAAGATCC i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20770124 46 + 189454096 GCTACTGGCTAATAGACATCTCCCCTTGCAAATCCCATAAAGATCC i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16366062 46 + 178775436 GCTACTGGCTAATAGACATCTCCCCTTGCAAATCCCACAAAGATCC i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19852639 46 - 48547382 GCTACTGGCCAATAGACATCTCCCCTTGCAAATCCCACAAAGATCC i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21208579 46 - 190850796 TCTACTGGCCAAGAAACATCTTTCTTTGCAAATCCCACAAAGATCC i calJac3.chr3 C 0 C 0 s canFam3.chr3 3788571 44 - 91889043 TCTTCTGACTAATGGACATTTCCCCTTGGGAATGCC--AGAGATCA i canFam3.chr3 C 0 C 0 e mm10.chr5 49191210 5438 + 151834684 I a score=1757009.000000 s hg38.chr4_KI270790v1_alt 86760 534 + 220246 CAAATCCAA--TATCACCAACACAAACCTGATCCC---CTTTTGTCA-TTTAAA---AAAATCTTACTAAAGAAGGCCATCACTA-TTCCAGTCACTAACGTTAAACAAACAA---------AACA--AAAAACTGGGTGTCATCCTAGATCCCTT--------------------------------------------------------------------------------------------------TATGCTTACCACACATCCCTTCATTTAATCC-CCCAACCGTTTTCACAGGCACCAGTGTCCTAGGGTTCTATCTGGGCTTCCTAGCACCAATCTCCCTCCTCTCAATTCCTTCTTCACATT--GCTGCAGTCCAA--ACTATCATCAAAC-C-AAATCTGATTATGCCATTGCTTTTCTTTTCTCCTTAAAACACTTTAATGTTTTCACATTGCCAAAAGAATCAATTTCAACATCCATGCAATTAAAAAGTGCATTTATAACCCAGAGACTGTCAATTT-ACCCCAACTAATCTCCATCT-------------CATTCCATGTATATAATCAAAAT----TA------ATATATATCCAGCTATAATAAGTACTTACAGTGTCCCAAATATGCTGTTCTGCTTCTGGCCTCGaccactccaacttaaat s panTro4.chr4 21475070 514 + 193495092 CAAACCCAA--TATCACCAACACAAACCTGATCCC---CTTTTGGCA-TTTAAA---AAAATCTTACTAAAGAAGGCCATCACTA-TTCCAGTCACTAACGTTAAACAAACAA---------AACA--AAAAACTGGGTGTCATCCTAGATCCCTT--------------------------------------------------------------------------------------------------TATGCTTACCACACTTCCCTTCATTTAATCC-CCCAACCATTTTCACAGGCACCAGTGTCCTAGGGTTCTATCTGGGCTTCCTAGCACCAATCTCCCTCCTCTCAATTCCTTCTTCACATT--GCTGCAGTCCAA--ACTATCATAAAAC-C-AAATCTGATTATGCCATTGCTTTTCTTTTCTCCTTAAAACACTTTAATGTTTTCACATTGCCAAAAGAATCAATTTCAACATCCATGCAATTAAAAAATGCATTTATAACCCAGAGACTGCCAATTT-ACCCCAACTAATCTCCATCT----------------------TATAT---------------------ATATATATCCAGCTATAATAAGGACTTACAGTGTCCCAAATATGCTGTTCTGCTTCTGGCCTCGaccactccaacttaaat i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21650466 540 + 198332218 CAAATCCAA--TATCACCAACACAAACCTGATCCC---CTTTTGGCA-TTTAAA---AAAATCTTACTAAAGAAGACCATCACTA-ATCCAGTCATTAACGTCAAACAAACAA---------AACA--AAAAACTGAGTGTCATCCTAGATCCCTT--------------------------------------------------------------------------------------------------TATGCTTACCACACATCCCTTCATTTAATCC-CCCAACCGTTTTCACAGGCACCAGTGTCCTGGGGTTCTATCTGGGCTTCCTAGCACCAATCTCCCTCCTCTCAATTCCTTCTTCACATT--GCTGCAGTCCAA--ACTATCATAAAAC-C-AAATCTGATTATGCCATTGCTTTTCTTTTCTCCTTAAAACACTTTAATGTTTTCACATTGCCAAAAGAATCAATTTCAACATCCATGCAATTAAAAAATGCATTTATAACCCAGAGACTGCCAATTT-ACCCCAACTAATCTCCATCT-------------CATTCCATGtatataatcaaaat----taaaaaatatatatatCCAGCTATAATAAGTACTTACAGTGTCCCAGATGTGCTGTTctgcttctgaccctgaccactccaacttaaat i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20262668 535 - 85365473 CAAATCCAA--TATCACCAACACAAACCTGATCCC---CTTTTGGCA-TTCTAA---AAAATCTTACTGAAGGGTGCCATCACTA-ATCCAGTCACTAACGTTAAACAAACAA---------AACA--AAAAACTGGGTGTCATCCTAGATCCCTT--------------------------------------------------------------------------------------------------TATGCTTACCACACATCCCTTCATTTAATCC-CCCAACCGTTTTCACAGGCACCAGTGTCCTAGGGTTCTATCTGGGCTTCCTAGCACGAATCTCCCCCCTCTCAATTCCTTCTTCATATT--GCTGCAGTCCAA--ACTATCATAAAAC-C-AAATCTGATTATGCCATTGCTTTTCTTTTCTCCTTAAAACACTTTAATGTTTTCACATTGCCAAAAGAATCAATTTCAACATCCATGCAATTAAAAAATGCATTTATAACCTGGAGACTGCCAATTT-ATCCCAACTAATCTCCATCT-------------CATTCCatgtatataatcaaata----tat-----atatatatCCAGCTATAATAAGTACTTACAGTGTCCCAAATGTGCTGTTCTGCTTCTGGCCTCGACCACTCCAACTTAAAT i nomLeu3.chr20 C 0 M 770 s rheMac3.chr5 16729023 544 + 184069350 CAAATCCAA--TATCACAAACACAAACCTGATCCC---CTTTTGGCA-TTTAAA---AAAATTTTACTAATGGGTGCCATCACTA-ATCCAGTCACTAACGTTAAACAAACAAC--------AACAACAAAAACTGGATGTCATCCTAGATCCCTT--------------------------------------------------------------------------------------------------TATGCTTACCACACATCCCTTCATTTAATCC-CCCAACCGTTCTCACAGGCACCAGCGTCCTAGGGTTCTATCTGGGCTTCCTAGCTCTAATCTCCCTCCTCTCAATTCCTTCTTCACATT--GCTGCAGTCCAA--ACTGTCATAAAAC-C-AAACCTGATTATGCCATTGCTTTTCTTTTCTCCTTAAAACACTTCAATGTTTTCACATTGCCAAAATAATGAATTTCAACAACTATGCAATTAAAAAATGCATTTATAACCTGGAGACTGCCAATTT-ATCCCAACTAATCTCCATCTCCAT-------CTCATTCCATGTATACAATCAAAAT----TAT-----ATATATATCCAGCTATAATAAGTACTTACAGTGTCCCAAATGTGCTGTTCTGCTTCTGGCCTTGaccactccaacttaagt i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20770170 544 + 189454096 CAAATCCAA--TATCACAAACACAAACCTGATCCC---CTTTTGGCA-TTTAAA---AAAATTTTACTAATGGGTGCCATCACTA-ATCCAGTCACTAACGTTAAACAACCAAC--------AACAACAAAAACTGGATGTCATCCTAGATCCCTT--------------------------------------------------------------------------------------------------TATGCTTACCACACATCCCTTCATTTAATCC-CCCAACCGTTCTCACAGGCACCAGCGTCCTAGGGTTCTATCTGGGCTTCCTAGCTCTAATCTCCCTCCTCTCAATTCCTTCTTCACATT--GCTGCAGTCCAA--ACTGTCATAAAAC-C-AAACCTGATTATGCCATTGCTTTTCCTTTCTCCTTAAAACACTTCAATGTTTTCACATTGCCAAAATAATCAATTTCAACAACTATGCAATTAAAAAATGCATTTATAACCTGGAGACTGCCAATTT-ATCCCAACTAATCTCCATCTCCAT-------CTCATTCCATGTATACAATCAAAAT----TAT-----ATATATATCCAGCTATAATAAGTACTTACAGTGTCCCAAATGTGCTGTTCTGCTTCTGGCCTTGaccactccaacttaagt i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16366108 545 + 178775436 CAAATCCAA--TATCACAAACACAAACCTGATCCc---cttttggcattttaaa---aaaattttactaatGGGTGCCATCACTA-ATCCAGTCACTAAcgttaaacaaacaac--------aacaacaaaaactggatGTCATCCTAGATCCCTT--------------------------------------------------------------------------------------------------TATGCTTACCACACATCCCTTCATTTAATCC-CCCAACCGTTCTCACAGGCACCAGTGTCCTAGAGTTCTATCTGGGCTTCCTAGCTCTAATCTCCCTCCTCTCAATTCCTTCTTCACATT--GCTGCAGTCCAA--ACTGTCATAAAAC-C-AAACCTGATTATgccattgcttttcttttctccttaaaaCACTTCAATGTTTTCACATTGCCAAAATAATCAATTTCAACAACTATgcaattaaaaaatgcatttataaccTGGAGACTGCCAATTT-ATCCCAACtaatctccatctccat-------ctcatTCCATGTATAcaatcaaaat----tat-----atatatatccagCTATAATAAGTACTTACAGTGTCCCAAATGTGCTGTTCTGCTTCTGGCCTTGACCACTCCAACTTAAGT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19852685 547 - 48547382 CAAATCCAA--TATCACAAACACAAACCTGATCCC---CTTTTGGCA-TTTAAA---AAAATTTTACTTATGGGTGCCATCACTA-ATACAGTCACTAAC-TTAAACAAACAAC--------AACAACAAAAACTGGATGTCATCCTAGATCCCTT--------------------------------------------------------------------------------------------------TATGCTTACCACACATCCCTTCATTTAATCC-CCCAACCGTTCTCACAGGCACCAGTGTCCTAGGGCTCTATCTGGGCTTCCTGGCTCTAATCTCCCTCCTCTCAATTCCTTCTTCACATT--GCTGCAGTCCAA--ACTGTCATAAAAC-C-AAACCTGATTATGCCATTGCTTTTCTTTTCTCCTTAAAACACTTCAATGTTTTCACATTGCCAAAAGAATCAGTTTCAACAACTATGCAATTAAAAAATGCATTTATAACCTGCAGACTGCCAATTT-ATCCCAACTAATCTCCATCTCCAT-------CTCATTCCATGTATACAATCAAAATTTTATAT-----ATATATATCCAGCTATAATAAGTACTTACAGTGTCCCAAATGCGCTGTTCTGCTTCTGGCCTTGaccactccaacttaaat i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21208625 532 - 190850796 CAAATCCAG--TATCACCAACACAAACCTGATCCC---CTTTTGGCG-TTTTAA---AAAAATCTACTCAAGGGTTCCATCACTA-A-CCAGTCACTAAGGTTAAACAAACAA---------AACA--AAAAACTGGGTGTCATCCTAGATTCCTT--------------------------------------------------------------------------------------------------TATGCTTACCACACATCCCTTCATTTAATCT-CCCAGCCTTTCCCACAAGCGCCAGTGTCCTAGTGTTCTATCTGCACTTCCTAGCTCCAATCACCATCCTCTTACTTCCTTCTTCACCTT--ACTGCAGTCCAA--ACTATCATAAAAC-A-AAATCTGATTATGCCATTGCTTTTTCTTTCTCCTTGAAACACTTTAATGTTTTCACATTGCCAAAAGAATCAATTTCAACACCCGTGCAATTAAAAAATGCATTTATAACCTGGAGAGTGCCAATTT-ATCCCAATTAATCTCCGTCT-------------CATTCAATGTATATAATCAAAAT----T-------ATATATATCCAGCTATAATAAGTACTTACAGTGTCCCAAATGTGCTGTTCTGTTTCTGGCCTTGaccactctaatgtaaat i calJac3.chr3 C 0 C 0 s mm10.chr5 49196648 618 + 151834684 CAAGCTCCA--TCTCATT-ATACAAACCTGATCCCCATCTTTGGGTA-TTTGCACTTGCAATCTTATTGTT----------------TACAATCACTAATGTTAGACAAATACACAAGAAAGAAAA--GAAAAATACCTGTCATCCCAGAATCCTCCATTTTCTGTATTCCCTGGCATTCCATGAGTCACCAATCTTTATTCTAT-ATAAAT---------------------TTAAAACCATGCCTCTGCCG-CATACTTACCACACATCACTTTGTTGACCCCACTCAGCATTTCCCATGAGCATCAATGTCAATAAATAAATCCTGGTCTTCCGGGCTTCA-----CCTCCTCTTGATTGCTTCTTCATAGT--GCTGCGGCCTGAGGAGTTTCATCAAACTC-AAATCTGATTAGGCT-CTGATCTCCCTTTCTGCTTAAAACACTTTAATGTCTTTCCGTTGCCAATAGAATAAATTTAAGCACCCATCCCACTAGGAAATGCATTTGTAACCTGAGCTCTGCCAATAC-ATCCAAACCAATCTACATCTTCTCTCTATCACACACAACATTTATAGAAATAAAAT----TTC-----AAAAAC-TATAACCATAACAAGTATCTGCAAATTCTTAAAT-TGCTCTCTTACTTCTTGTCATATTTACCTCAGATCAAAT i mm10.chr5 I 5438 C 0 s canFam3.chr3 3788615 573 - 91889043 CAAACTCAGCTTATCACCACCTCGAACCTGACCCC---CTTT---CA-TTTTAT-TTTTTATCTTATTTAATTGTGTCATCAACACATCCAATCACTAATGGAAAACAAACAC---------AACA---AAAACTGGATACCACTTTGGATTCTTT--------------------ATTTTTCCTTTTGCCAACGTCCAATCAATCACCAATCTAAAGTGATTATATATTATTTTAAAGCCATACCTTTCATGTCACATTTA-CACACGTCCCTTACTTTAAACT-CTCAGCATTTCTCACAGGCACTGATGTCACTGGGCCCTGTCTGGTCTTGCTAGGCCCAATCT-CCTCCTTTCAATTCCTGCTCCACTGTAAAATGTGGGTGAG-----GTTATATACC-CTAAATCTGACCATGCTG-TGCT----CTTTCTCTTTAAGACACTTTAG-GTTTTCATACTGCCAAAAGAATAAACTTCAA-------ACCATTTTAAAA-----TTATAACCTAGACTTTACCCACTTAATCCAAATTAATCT-------------------TATTCTATATATATGTTCCATAT---ATAT-----ACATATATATGGTAAAAAAAAATCC-----------------AGCCATTCTGCTTCTGACTTTCACTACTCTGAATCGAAA i canFam3.chr3 C 0 C 0 a score=1254430.000000 s hg38.chr4_KI270790v1_alt 87294 465 + 220246 caccatcatg-ttttttctgcacctctgtaagagactctcctttcccctttctcttcccctaaacatgtcctccacccaaccccctaagtgaattttgat-------------------------------------------aaaataataagatcatgtcagtcctctatttggctctccaatggcttcctgctgcact-ggatggatgttcatattccatccattggtctataaggtcctctatgatctgattcctgcctaccctctgccccttctctccttccatcctcccactctttcaaatcactccaacccaactgaccttcctgatcctcacatgagccaagctcatttctgctttagga---actttgctctcagaaccttcctgtagcttttcctcca-tgcttatgcatggctggttcttactccttattcaggtctcaactgtcacctcctcggagaagctctccttgaccacaccatcaaacgctaagtgtcctccccata s panTro4.chr4 21475584 465 + 193495092 caccatcatgtttttttctgcacctctgtaagagactctcctttcccctttctcttcccctaaacatgtcctccacccaaccccctaagtgaattttgat-------------------------------------------aaaataataagatcatgtcagtcctctatttggctctccaatggcttcctgctgcact-ggatggatgttcatattccatccattggtccataaggtcctctatgatctgattcctgcctaccctctgccccttctctccttccatcctcccactctttcaaatcactccaaccaaactgaccttcctgatcctcacatgagccaagctcatttctgctttagga---actttgctcttagaacattcctgtagcttttcctcca-tgcttatgcatggctggttcttactccttattcaggtctcaactgtcacctcctcggagaagctctccttgaccacaccatc-aacgctaagtgtcctccccata i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21651006 465 + 198332218 caccatcatg-ttttttctgcacctctgtaagagactctcctttcccctttctcttcccctaaacatgtcctccacccaaccccctaagtgaattttgat-------------------------------------------aaaataataagatcatgtcagtcctctatttggctctccaatagcttcctgccacact-ggatggatgttcatattccatccattggtctacaaggtcttctatgatctgattgctgcctaccctctgccccttctctccttccatcctcccactctttcaaatcactccaaccaaactgaccttcctgatcctcgcatgagccaagctcatttctgctttagga---actttgctctcagaaccttcctgtagcttttcctcca-tgcttatgcatgactggttcttactccttattcaggtctcaattatcacctcctcggagaagctctccttgaccacaccatcaaatgctaagtgtcctccccgta i ponAbe2.chr4 C 0 C 0 s rheMac3.chr5 16729567 465 + 184069350 caccatcatg-ttttttctgcacctctgtaagagactcacctttcccctttctcatcccctaaacatgtcctccacccaaccccctaagttaattttgat-------------------------------------------aaaataataagaccatgtcagtcctctgtttggctctccagtggcttcctgctgcact-ggatagatgttcacattccatccattggtctataaggtcttctatgatctgattcctgcctaccctctgtccctcctctccttccatcctcccactctttcaaatcactccaaccaaactgaccttcctgatcttcacatgagcaaagctcatttctgctttagga---actttgctctcagaacctttctgtaccttttcctcca-tgcttatgcatggctggttcttactccttattcacgactcaattgtcacctcctcggagaagctctccttgaccacactatcaaacgctgagtgtcctccccata i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20770714 466 + 189454096 caccatcatgtttttttctgcacctctataagagactcacctttcccctttctcatcccctaaacatgtcctccacccaaccccctaagttaattttgat-------------------------------------------aaaataataagaccatgtcagtcctctgtttggctctccagtggcttcctgctgcact-ggatagatgttcacattccatccattggtctataaggtcttctatgatctgattcctgcctaccctctgtccctcctctccttccatcctcccactctttcaaatcactccaaccaaactgaccttcctgatcttcacatgagcaaagctcatttctgctttagga---actttgctctcagaacctttctgtaccttttcctcca-tgcttatgcatggctggttcttactccttattcatgactcaattgtcacctcctcggagaagctctccttgaccacactaccaaacgctgagtgtcctccccata i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16366653 465 + 178775436 CACCATCATG-TTTTTTCTGCACCTCTGTAAGAGACTCACCTTTCCCCTTTCTCATCCCCTAAACATGTCCTCCACCCAACCCCCTaagttaattttgat-------------------------------------------aaaataataagACCATGTCAGTCCTCTGTTTGGCTCTCCAGTGGCTTCCTGCTGCACT-GGATAGATGTTCACATTCCATCCATTGGTCTATAAGGTCTTCTATGATCTGATTCCTGCCTACCCTctgtccctcctctccttccatcCTCCCACTCTTTCAAATCACTCCAACCAAACTGACCTTCCTGATCTTCACATGAGCAAAGCTCATTTCTGCTTTAGGA---ACTTTGCTCTCAGAACCTTTCTGTACCTTCTCCTTCA-TGCTTATGCATGGCTGGTTCTTACTCCTTATTCAGGACTCAATTGTCACCTCCTCGGAGAAGCTCTCCTTGACCACACTATCAAACACTGAGTGTCCTCCCCATA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19853232 464 - 48547382 caccatcatg-ttttttctgcacctctgtaagagactcgcctttcccctttctcatcccctaaacatgtcctccacccaaccccctaagttaattttgat-------------------------------------------aaaataataagaccatgtcaatcctctgtttggctctccagtggcttcctgctgcact-ggatggatgttcacattccatccattggtctataaggtcttctatgatctgatccctgcctaccctctgtccctcttctccttccatcctcccactctttcaaatcactccaaccaaactgacc-tcctgatcttcacatgagccaagctcatttctgctttagga---actttgctttcagaacctttctgtaccttttccttca-tgcttatgcatggctggttcttactccttattcaggactcaattgtcacctcctcggagaagctttccttgaccacactatcaaacgctgagtgtcctccctata i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21209157 461 - 190850796 cactgtcgtgtttttttctgcacctctgcaagagcatctcctttttcc-ttctcatcccctaaacatatcctccacccaaccctcacagtgaattttgat-------------------------------------------aaaatagtaagatcaggtcagtcctctatttggctctccaacggctttcaactgcact-ggatgaatgtttacattccatccattggtctataaggttctctatgatctgattccagcctaccctctgtccctcctctccttctatcctcctactctttcaaatcactcaaacctaactgaccttcctgatcctcacataagctgagctcttttctgctttagga---actttgctctcagaactttcctgtagctttccctcca-tgcttatgcatggctggttcttaccccttattcaggtctcaattgtca---cctcagagaagctctccttgaccaaactatcaaacgctagctgtcctttc-aca i calJac3.chr3 C 0 C 0 s mm10.chr5 49197266 419 + 151834684 ---CATCATC-ATTTTTCTGAACTCCCGCAGAAA----TACTTTCTTCCGCCTCAATCCATACAGAAAAGCTCCACTCAGAC--CAAAGTGTGTTTGCAA-------------------------------------------AACGTAACCATGTCTTTTCGATCTTCTGTCTGTAGCTACAATGGCTTCCTAGAGCACT-TGATTATAATTAGCATCTTCTTTCTTAGTTCATAAGGTCAG-TGTGGTCTGGTGGCTGCTTGTTTCCT--------CCTCCTCCCATTCTACCAAAA--TCACACCACTCCAACCAAAATGATCTTCCTCATCATCACATGTGACAAGGTCATGGCTGCCTCCGGAAAGACATGG-----AGAGACATCTTGTAG-TTCTTCTCCA-----CATGCACAGACGCTTCTTCCTCC---CTCAGAGTTCAGTAGTCA-----------AA---CTCCTTGACCTGGCCATTCCAGGCTACCTTTCATCCCAA-- i mm10.chr5 C 0 C 0 s canFam3.chr3 3789188 427 - 91889043 CACCATCATG--TGCCTCTGGCCCTCTGCAAAATCTTCTCTTTTCTTC-TTCTGATTGCCTAAACATATTCTCTA-TCAACCTCTAAAGTGaatttttattttttattttttttatttattttttCctaaagtgaatttttaaaacataattagattatgacagtcttctgtctggttctccagtggtttcacattgcactgggactacagtccacactccatcccttggtctac-aggctgtatgtcatctgattcctacctattctctg---cagcctttttttcattctcccactcattccagtcacttcaaccaaactga-ctttctgatcataaaatgagccaagctaatttcttcttcagga---acgttgctcttggaacactcctacagcttttcccccgttgcatatacatgtctgg---------------------------------------------------------------------------tgtcccaccaata i canFam3.chr3 C 0 C 0 e nomLeu3.chr20 20263203 770 - 85365473 M a score=10277.000000 s hg38.chr4_KI270790v1_alt 87759 3 + 220246 ttt s panTro4.chr4 21476049 3 + 193495092 ttt i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21651471 3 + 198332218 ttt i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20263973 3 - 85365473 TTT i nomLeu3.chr20 M 770 C 0 s rheMac3.chr5 16730032 3 + 184069350 ttt i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20771180 3 + 189454096 ttt i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16367118 3 + 178775436 TTT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19853696 3 - 48547382 ttt i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21209618 3 - 190850796 ttt i calJac3.chr3 C 0 C 0 s mm10.chr5 49197685 1 + 151834684 --T i mm10.chr5 C 0 C 0 s canFam3.chr3 3789615 3 - 91889043 ctc i canFam3.chr3 C 0 C 0 a score=321858.000000 s hg38.chr4_KI270790v1_alt 87762 110 + 220246 ctctgttactttactgtgctttat-----tttcttcacgccatttctcacTTAGCAAAATCACCTGAATTAGTTAGTTTACTAATATAGTCATGCCCCT-CCCCAACGCAATTGTA s panTro4.chr4 21476052 109 + 193495092 ctctgttactttactgtgctttat-----gttcttcatgccatttctcacttagcaaaatcacctgaattagttagtttactaatatagtcatgcccc--ccccaacgcaattgta i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21651474 106 + 198332218 ctctgttactttactgtgctttat-----tttcttcacgccatttctcacTTAGCAAAATCACCTGAA----TTAGTTTACTAATATAGTCATGCCCCTCCCCCCACGCATTTGT- i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20263976 110 - 85365473 CTCTGTTACTTTACTGTGCTTTAT-----TTTCTTCATGCCACTTCTCACTTAGCAAAATCACCTGAATTAGTTAGTTTACTAATATAGTCATGCCCCT-CCCCCACTCAATTGTA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16730035 110 + 184069350 ctttgttactttactgtgcattat-----tttcttcatgccatctctcacttagcaaaatcacctgaattaattagtttactaatatagtcatgcccct-cccccactcaattgta i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20771183 110 + 189454096 ctttgttactttactgtgcattat-----tttcttcatgccatctctcacttagcaaaatcacctgaattaattagtttactaatatagtcatgcccct-cccccactcaattgta i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16367121 110 + 178775436 CTTTGTTACTTTACTGTGCATTAT-----TTTCTTCATGCCATCTCTCACTTAGCAAAATCAACTGAATTAATTAGTTTACTAATATAGTCATGCCCCT-CCCCCACTCAATTGTA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19853699 110 - 48547382 ctttgttactttactgtgcattat-----tttcttcatgccatctctcacttagcaaaatcacctgaattaattagtttactaatatagtcatgcccct-cccccactcaattgta i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21209621 110 - 190850796 ctctgttattttactgtgctttac-----ttttttcatgccatttctcacTTTGCAAAATCACCTGAATTACATAGTTTAGGAATACATTCACATCCCT-CCCCCCCTCCATTGTA i calJac3.chr3 C 0 C 0 s mm10.chr5 49197686 100 + 151834684 CTCTTTTATATTTCTTTGATTTACTAGCATTTTTTCCAGGCATTTTTCACTGTGCATTTTCTCCTCAATT--CTTCTTTA-------------GCTCAT-CCCCAACACAACTATA i mm10.chr5 C 0 C 0 e canFam3.chr3 3789618 0 - 91889043 C a score=1118606.000000 s hg38.chr4_KI270790v1_alt 87872 311 + 220246 AGGACACCAT-------------------------------------------------------------------------------------------TTCAATA---------------AGCATTTGTT-----GAAtgtctcaatggctttgc-------------------tta-tgttgttccttctgcttcaaataggcttcttcaaccttgggcactgactacttgctaggctctagaatattcttcaacacttaattcaaacaactcttctgctgggaagtcctctttcaccccaaacagcattgatcacatctaggtttgcc-------t----------tg----ctccatgtctc-attacagcatcaaactgtttcataactatttgcttgcatgtccttctcccaaattagacctccttggagtaaaggatgaatcttattcatctcag s panTro4.chr4 21476161 331 + 193495092 aggacaccatttc--------------------ctggca---------------------------------------------------cagagcactagttcaata---------------agcatttgtt-----gaatgtctcaatggctttgc-------------------tta-tgtttttccttctgcttcaaataggcttcttcagccttgggcactgactacttgctaggctctagaatattcttcaacacttaattcaaacaactcttctgctgggaagtcctctttcaccccaaacagcattgatcacatctaggtttgct-------t----------tg----ctccatgtctc-attacagcatcaaactgtttcataactatttgcttgcatgtccttctcccaaattagacctccttggagtaaaggctgaatcttattcatctcag i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21651580 402 + 198332218 AGCACACCATTTCTGACACAGAGCACTAGTTCATTAGCATTTGTGAATATCTCAATGACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGAGCACTAGTTCAATA---------------AGCATTTGTT-----GAAtatctcaatgtctttgc-------------------tta-tgttgttccttctgtttcatataggcttcttcaaccttgggcactgactactggctaggctctagaatattcttcaacacctagttcaaacaactcttctgctgggaagtcctctttccccccaaacagcattgatcatatctaggtttgcc-------t----------tg----ctccatgtctc-attacagcatcaaactgtttcataactatttgcttgcatgtccttctcccaaattagacctccttggagtaaaggctgaatcttattcatctcag i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20264086 331 - 85365473 AGCATACcatttc--------------------ctggca---------------------------------------------------cagagcaccagttcaata---------------agtatttgtt-----gaatgtctcaatggctttgc-------------------tta-tgttgttccttctgcttcaaataggcttcttcaaccttaggcactgactacttgctaggctctagaatattcttcaacacttagttcaaacaactcttctgctgggaagtcctctttcaccccaaacagcattgatcacatctaggtttgcc-------t----------tg----ctccatgtctc-atcacagcgtcaaactgtttcataattatttgcttgcatgtccttctcccaaattaggcctccttggagtaaaggctgaatcttattcatctcag i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16730145 331 + 184069350 agcacaccatttc--------------------ctggca---------------------------------------------------cagaacactagttcaata---------------agcatttgtt-----gaatgtctcaatggctttgc-------------------tta-tgttgttccttctgcttcaaataagcttcttcaaccttgggcactgactacctgctagactctagaatattcttcaacacttagttcaaataactcttctgctgagaagtcctccttcaccccaaacagcattgatcacatctaggtttgcc-------t----------ta----ctccatgtctc-attacagcatcaaattgcttcataattatttgcttgcctgcccttctcccaaattagacctccttggagtaaaggctgaatcttattcaactcag i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20771293 331 + 189454096 agcacaccatttc--------------------ctggca---------------------------------------------------cagaacactagttcaata---------------agcatttgtt-----gaatgtctcaatggctttgc-------------------tta-tgttgttccttctgcttcaaataagcttcttcaaccttgggcactgactacctgctaggctctagaatattcttcaacacttagttcaaataactcttctgctgagaagtcctccttcaccccaaacagcattgatcacatctaggtttgcc-------t----------ta----ctccatgtctc-attacagcatcaaattgcttcataattatttgcttgcatgcccttctcccaaattagacctccttggagtaaaggctgaatcttattcaactcag i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16367231 346 + 178775436 AGCACACCATTTC--------------------CTGGCA---------------------------------------------------CAGAACACTAGTTCAATAATTTGAACTTATTATAGCATTTGTT-----GAATGTCTCAATGGCTTTGT-------------------TTA-TGTTGTTCCTTCTGCTTCAAATAAGCTTCTTCAACCTTGGGCACTGACTACCTGCTAGGCTCTAGAATATTCTTCAACACTTAGTTCAAATAACTCTTCTGCTGAGAAGTCCTCCTTCACCCCAAACAGCATTGATCACATCTAGGTTTGCC-------T----------TG----CTCCATGTCTC-ATTACAGCATCAAATTGCTTCATAATTATTTGCTTGCATGCCCTTCTCCCAAATTAGACCTCCTTGGAGTAAAGGCTGAATCTTATTCAACTCAG i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19853809 331 - 48547382 agcacaccatttc--------------------ctggca---------------------------------------------------cagaacactagttcaata---------------agcatttatt-----gaatgtctcaatggctttgc-------------------tta-tgttgttccttctgcttcacacaggcttcttcaaccttgggcactgactacttgctaggctctagaatattcttcaacacttagttcaaataactcttctgctgggaagtcctctttcaccccaaacagcattgatcacatctaggtttgcc-------t----------tg----ctccatgtctc-attacagcatcaaattgcttcataattatttgcttgcatgcccttctcccaaattagacctccttggagtaaaggctgaatcttattcaactcag i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21209731 331 - 190850796 AGCACACCTTTTc--------------------ctggca---------------------------------------------------cacagcactagttcaata---------------agcatttgtt-----gaatgtctcaatggctttgc-------------------tta-tgttgttccttctgcttcaaataggtttcttcaacctttgggactgactacttgctcagctctagaatattcttcaacacttggttcaaacagctcttctgctgggaagtcctctttcatcccaaacagcattaatcacacctaggtttgcc-------t----------tg----ctccatgtctc-attacagcataaaactgtttcataattatttgcttgcatgctcttctcccaaattagacctccttggagtaaaggctgaatcttattcatctcag i calJac3.chr3 C 0 C 0 s mm10.chr5 49197786 333 + 151834684 CATCTATCTTTTC--------------------TTGGCA--------------------------------------------------AAAAAGCACCAGGGTAACA---------------AGTATTTCTTTAATGGAATGCTTCAATGGCATTGTAGATATGGTGGTGTTGTAATTATTGTTGTTGCTGCTGCTTAGAATATAGTACATAAATCCTGGCCACAAAGTAA-TGCTAGGTTCTTCACTATT-TTCAAAAATTAGTTCAG--------TTTTCTTAGGATTTCTCTCTTCCCCTTGAAAGCATGGGTCACACGCAACTTTTCTGCTACCAT----------TATACTCTCTGTGCTTCTGCTATGTCATCAAACAAAT---TAATTAGTTGTTGGCAAGCCCTATTACCTAACTAGACTTATTTGTATTAG----------------------- i mm10.chr5 C 0 I 42 s canFam3.chr3 3789618 313 - 91889043 -------------------------------------------------------------------------------------------aaagcaccagctcaaaA---------------AGCATTTGTT-----GAATG--tcaatggctttgt-------------------ata-ggctattccttctgcttgatatatggttgtccaagctgg-----tcactatttgctaggctcttgattagacttgaacccttagttcaaacacctcttatgctgagaagtccactatcacccccaatacagttgatcacatgcacctttggc-------tctgatatatatg----gcccatgcct--gtagtaccatcaacctgtttcttgattatttcttttcatgtccttcaccctaattaggactccttagaatagagactgtgtctaaatcattttag i canFam3.chr3 C 0 C 0 a score=642363.000000 s hg38.chr4_KI270790v1_alt 88183 199 + 220246 gatcctctgcatataacacggttctccaggggcagtagatactcaataaatgtatcctgaatgaacaaatAAATCTGCTGC---TGCCCATACCAGAGTGTAGATAAGA---TGTGAGAACAGTGATGATCAGAGTGATGGAGCCTTAAGACTAATAAATAAGCTGAACTC--AAG--TCTCTCATTGTATGTGT------GTGTGTTGACTTTT s panTro4.chr4 21476492 197 + 193495092 gatcctctgcatataacacggttctccaggggcagtagatactcaataaatgtatcctgaatgaacaaatAAATCTGCTGC---TGCCCATACCAGAGTGTAGATAAGA---TGTGAGAACAGTGATGATCAGAGTGATGGAGCCTTAAGACTAATAAATAAGCTGAACTC--AAG--TCTCTCATTGTATGTGC------GTGTGTTGAC--TT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21651982 200 + 198332218 gatcctctgcatataacatggttctccaggggcagtagatactcaataaatgtatcctgaatgaacaaatAAATCTGCTGC---TGCCCATACCAGA-TGTAGATAAGA---TGTGAGAACAGTGATGATCAGAGTGATGGAGCCTTAAGACTAATAAATAAGCTGAACTC--AAGTCTCTCTCATTGTATGTGT------GTGTGTTGACTTTT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20264417 199 - 85365473 gatcctctgcatacaacacggttctccaggggcagtagatactcaataaatgtatcctgaatgaacaaatAAATCTGCTGC---TGCCCATACCAGAGTGTAGATAAGA---TATGAGAACAGTGACGATCAGAGTTATGTAGCCTTAAGACAAATAAATAAGCTGAACTC--AAG--TCTCTCATTGTATGTGT------GTGTGTTGACTTTT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16730476 199 + 184069350 gatcctctgcatataacttggttctccaggggcagtagatactcaataaatgtatcctgaaagaacaaatAAATCTGCTGC---TGCCCATACCAGAGTATAGATAAGA---TGTGAGAACAGTGATGATCAGAGTGATGTAGCCTTAAGACTAATAAATAAGCTTAACTC--AAG--TCTCTCATTGTATGTGT------GTGTGTTGACTTTT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20771624 199 + 189454096 gatcctctgcatataacttggttctccaggggcagtagatactcaataaatgtatcctgaaagaacaaatAAATCTGCTGC---TGCCCATACCAGAGTATAGATAAGA---TGTGAGAACAGTGATGATCAGAGTGATGTAGCCTTAAGACTAATAAATAAGCTTAACTC--AAG--TCTCTCATTGTATGTGT------GTGTGTTGACTTTT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16367577 199 + 178775436 GATCCTCTGCATATAACACGGTTCTCCAGGGgcagtagatactcaataaatgtatcctgaaagaacaaataaatctGCTGC---TGCCCATACCAGAGTATAGATAAGA---TGTGAGAACAGTGATGATCAGAGTGATGTAGCCTTAAGATTAATAAATAAGCTGAACTC--AAG--TCTctcattgtatgtgt------gtgtgttgacttTT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19854140 199 - 48547382 gatcctctacatataacacggttctccaggggcagtagatactcaataaatgtatcctgaaagaacaaatAAATCTGCTGC---TGCCCATACCAGAGTGTAGATAAGA---TGTGAGAACAGTGATGATCAGAGTAATGTAACCTTAAGACTAATAAATAAGCTGAACTC--AAG--TCTCTCATTGTATGTGT------GTGTGTTGACTTTT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21210062 197 - 190850796 gatcctttacatataacaatgttctccagggtcagtagatactcaataaatgtatcctgaatgaataaatAAATCTGCTGC---TGCCCATACCAGAGTGTAGATAAGA---TGTGAGAACAGTGAAGATCAGAGTGATATAGCCTTAAGACTAATAAATAAGCTGAACTC--AAG--TCTCTCAT--TCTGTGT------GTGTGTTGAGTTTT i calJac3.chr3 C 0 C 0 s canFam3.chr3 3789931 159 - 91889043 tatcctctgaatagcac--------------------------------------------------aACGAATTTGCTGCCATTATCTATATCGTAGTACAGATAAGACAGTGTCACAACTGTGGCAATCACAGTGTTATAGTCCGAA----AATACATAAGCTGGACTTAAAAG--GCTCTCTCTGTATGTGTGTATTAGTGTGTCTACTTTT i canFam3.chr3 C 0 C 0 e mm10.chr5 49198119 42 + 151834684 I a score=3044193.000000 s hg38.chr4_KI270790v1_alt 88382 884 + 220246 --CACATGTATAGAAAGATACACA--CACATAAGGT---ATGAATAATCCTCAAGTACAATGATTCAAAGA-------------AATTACATATAATTAATCCTTATTATATTGCTCAGAATGTATTT----------------TAAATATATTTGGTCATTTATGGCTAATGCAACAATTGTAGCTGCAACTGTAGCTGTGGGTACTCATCTTTTTGATTTACGTATGCCTGTAACTGTACTTACCTAAATTGATAGGTTCAGAATAAAGAAGGAAGAGTATGAAGCAATTCAAATATAATGCTTAGTTCAAGGGAGGTACTTTAAATCTCTTCTTAATTA---AAGAAAT-----AAA-------GATTC--TTGGAAACCAATCATTGAATTTGAATTTTGCCATTTAAAATTTTATGAAA-CACTAATGAATAAGATATAATGTCCATG--TTTATATACATTCCTATAAATGTTAAGTATTTGCTTGCATCTACATATCTATTCAGCTTTGATTATT----CCTTTTTGGCAGTTTTATCCAATATATTGTTTTTT-------GGAAAAAACAACTTTTAACAATACTTACAAGACTCATGATTATTTCTCTCTTCTGTTGATTTTGCCAAAGAGCTTTAAAACATCTTTTATCACTCCTTCATTACATGGATGAATAAACTTATTTGAGCATTTATTTACTAACTT-TGCAGTTGCTCTAGTTTTCTAAATTTTGTGTTTTGAATC-CTCTTCTGTGTCTGTAAAATGACCTTGGAGTGAAGTTGTATCTGCAAGTCACATAAAGCCATAAGAGATCATAGAGATCACTAAAATTTATTCAGACTTTTTG-AGTATTTGCAAGATTGTGTGG-gaaagaaaaagaggaggaagaggagaaagaagaaagaaaggaaagaaaggatgaagggaaggaaatagagaaagaa s panTro4.chr4 21476689 886 + 193495092 --CACATGTATAGAAAGATACCCA--CACATAAAGT---ATGAATAATCCTCAAGTACAATGATTCAAAGA-------------AATTACATATAATTAATCCTTATTATATTGCTCAGAATGTATTT----------------TAAATATATTTGGTCATTTATGGCTAATGCAGCAATTGTAGCTGCAACTGTAGCTGTGGGTACTCATCTTTTTGATTTACGTATGCCTGTAACTGTACTTAACTAAACTGATATGTTCAGAATAAAGAAGGAAGAGTATGAAGCAATTCAAATATAATGCTTAGTTCAAGGGAGGTACTTTAAATCTCTTCTTAATTA---AAGAAAT-----AAA-------GATTC--TTGGAAACCAATCATTGAATTTGAATTTTGCCATTTAAAATTTTATGAAA-CACTAATGAATAAGATATAATGTCCATG--TTTATATACATTCCTATAAATGTTAAGTATTTGCTTGCATCTACATATCTATTCAGTTTTGATTATT----CCTTTTTGGCAGTTTTATCCAATATATTTCTTTTTGGG----GGAAAAAACAACTTTTAACAATACTTACAAGACTCATGATTGTTTCTCTCTTCTGTTGA-TTAGTCAAAGAGCTTTAAAACATCTTTTATCACTCCTTCATTACATGGATGAATAAACTTATTTGAGCATTTATTTACTAACTT-TGCAGTTGCTCTAGTTTTCTAAATTTTGTGTTTTGAATC-CTCTTCTGTGTCTGTAAAATGACCTTGGAGTGAAGTTGTATCTGCAAGTCACATAAAGCTATAAGAGATCATAGAGATCACTAAAATTTATTCAGACTTTTTG-AGTATTTGCAAGATTGTGTGg-gaaagaaaaagaggaggaagaggagaaagaagaaagaaaggaaagaagggaggaagggaaggaaATAGAGAAAGAA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21652182 885 + 198332218 --CACATGTATAGAAAGATA--CA--CACATAAAGT---ATGAATAATCCTCAAGTACAATGATTCAAAGA-------------AATTACATATAATTAATCCTTATTATATTGCTCAGAATGTATTT----------------TAAATATATTTGGTCATTTATGGCTAATGCAACAATTGTAGCTGCAACTGTAGCTGTCGGTACTCATCTTTTTGATTTACGTATGTCTGTAACTGTACTTACCTGAATTCATTGGTTCAGAATAAAGAAGGAAGAGTATGAAGCAATTCAAATATAATGCTTAGTTCAAGGGAGGTACTTTAAATCTCTTCTTAATTA---AAGAAAT-----AAA-------GATTC--TTGGAAACCAATCATTGAATTTTAATTTTGCCATTTAAAATTTTATGAAA-CACTAATGAATAAGATATAATGTCCATG--TTTACATACATTCCTATAACTGTTAAGTATTTGCTTGCATCCACATATCTATTCAGTTTTGATTATT----CCTTTCTGGCAGTTTTATCCAATATATTTCTTTTTGGG----GGAAAAAACAACTTTTAACAATACTTATAAGACTCGTGATTATTTCTCTCTTCTGTTGATTTTGCCAAAGAGCTTTAAAACATCTTTTATCACTCCTTCATTACATGGATGAATAAGCTTATTTGAGCATTTATTTACTAACTT-TGCAGTTGCTCTAGTTTTCTAAATTTTGTGTTTTGAATC-CTCTTCTGTGTCTGTAAAATGACCTTGGAGTGAAGTTGTATCTGCAAGTCACATAAAGCCATAAGAGATCATAGAGATCACTAAAATTTATTCAGACTTTTTG-AGTATTTGCAAGACTGTGTGg-gaaagaaaaagaggaggaagaggagaaagaagaaagaaaggaaagaagggaggaagggaaggaaATAGAGAAAGAA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20264616 880 - 85365473 --CACATGTATAGAAAGATACACA--CATGTAAAGT---ATGAATAATCCTAAAGTAGAATGATTTAAAGA-------------AATTACATATAATTAATACTTATTATATTGCTCAGAATAT-TTT----------------TAAATATCTTTGGTCATTTACTGCTAATGCAACAATTGTAGCTGCAACTGTAGCTGTGGGTACTCATCTTTTTGATTCACATATGCCTGTAACTGTACTTACCTAAACTGATAGGTTCAGAATAAAGAAGGAGGAGTATGAAGCAATTCAAATATAATGCTTAGTTCAAGGGAGATACTTTAAGTCTCTTCTTAATTA---AAGAAAT-----AAA-------GATTC--TGGTAAACTAATCATTG------AATTTTGCCATTTAAAATTTTATGAAA-CACTAATGAATAAGATATAATGTCCATG--TTTATATACATTCCTATAAATGTTAAGTATTTGCTTGCATCTACACATCTATTCAGTTTTGATTATT----CCTTTTTGGCAGTTTTATCCAATGTATTTCTTTTTGAG----GGAAAAAACAACTTTTAACAATACTTATAAGACTCATGATTATTTCTTTCTTCTGCTGATTTTGCCAAAGAGCTTTAAAACATCTTTTATCACTCCTTCATTCCATGGATGAATAAGCTTATTTGAGCATTTATTTACTAACTT-TGCAGTTGCTCTAGTTTTCTAAATTTTGTGTTTTGAATC-CTCTGCTGTGTCTGTAAAATGACCTTGGAGTGAAGTTGTATCTGCAAGTCACATAAAGCCAAAAGAGATCATAGAGATCATTAAAATTTATTCAGACTTTTTG-AGTATTTGCAAGACTGTGTGG-GAAAGAAAAAGAGGAGGAAGAGGAGAAAGAAGAAAGAAAGGAAAGAAGGGAGGAAGGgaaggaaatagagaaagaa i nomLeu3.chr20 C 0 I 53 s rheMac3.chr5 16730675 888 + 184069350 --CACATGTATAGAAAGATACACA--CACGTAAAGT---ATGAACAATCCTCAAGTACAATGATTCAAATA-------------AATTACATATAATTAATCC---TTATATTGCTCAGAATATATTT----------------TAAATATATTTGGTAGTTTACTGCTGATGCAACAATTGTAGCTGCAACTGTAGCTGTGGGTACTCATCTTTTTTATTTACGTGTGCCTGTAACTGTACTTACCTAAACTAATAGGTTCAGAATAAAGAAGGAGGAGTACAAAGCAATTCAAATATAATGCTTAGTTCAAGGGAGGTACTTTAAGTCTCTTCTTAATTA---AAGAAAT-----AAA-------GATTC--TGGGAAACTAATCATTGAATTTGAATTTTGCCATTTAAAATTTTATGAAA-CACTAATGAATAAGATATAATGCCCATG--TTTATATACATTCCTATAAATCTTAAGTATTTGCTTGCATCTACATATCTATTCAGTTTTGATTATCTATGCCTTTTTCGCAGTTTTATCCAATGTATTTCTTTTGGGG----GGAAAAAACAACTTTTAACAATACTTAGAAGACTCATGATTATTTCTCTCCTCTGCTGATTTTGCCAAAGAGCTTTAAAACATGTTTTATCATTCCTTCATTACATGGATGAATAAGCCTATTTGAGCATTTATTTACTAACTT-TGCAGTTGCTCTAGTTTTCTAAATTTTGTGTTTTGAATC-CTCTGCTGTGTCTGTAAAATGACCTTGAAGTGAAGTTGTATCTGCAAGTCACATAAAGCCATAAGAGATCATAGAGATTGTTAAAATTTATTCAGACTTTTTG-AGTATTTGCAAGACTGTGTGG-gaaagaaaaagaggaggaagaggagaaagaagaaagaaaggaaagaagggaggaaagcaaggaaatagagaaagGA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20771823 888 + 189454096 --CACATGTATAGAAAGATACACA--CACGTAAAGT---ATGAACAATCCTCAAGTACAATGATTCAAATA-------------AATTACATATAATTAATCC---TTATGTTGCTCAGAATATATTT----------------TAAATATATTTGGTAGTTTACTGCTGATGCAACAATTATAGCTGCAACTGTAGCTGTGGGTACTCATCTTTTTTATTTACGTATGCCTGTAACTGTACTTACCTAAACTGATAGGTTCAGAATAAAGAAGGAGGAGTACAAAGCAATTCAAATATAATGCTTAGTTCAAGGGAGGTACTTTAAGTCTCTTCTTAATTA---AAGAAAT-----AAA-------GATTC--TGGGAAACTAATCATTGAATTTGAATTTTGCCATTTAAAATTTTATGAAA-CACTAATGAATAAGATATAATGCCCATG--TTTATATACATTCCTATAAATCTTAAGTATTTGCTTGCATCTACATATCTATTCAGTTTTGATTATCTATGCCTTTTTCGCAGTTTTATCCAATGTATTTCTTTTGGGG----GGAAAAAACAACTTTTAACAATACTTATAAGACTCATGATTATTTCTCTCCTCTGCTGATTTTGCCAAAGAGCTTTAAAACATGTTTTATCATTCCTTCATTACATGGATGAATAAGCCTATTTGAGCATTTATTTACTAACTT-TGCAGTTGCTCTAGTTTTCTAAATTTTGTGTTTTGAATC-CTCTGCTGTGTCTGTAAAATGACCTTGAAGTGAAGTTGTATCTGCAAGTCACATAAAGCCATAAGAGATCATAGAGATCGTTAAAATTTATTCAGACTTTTTG-AGTATTTGCAAGACTGTGTGG-GAaagaaaaagaggaggaagaggagaaagaagaaagaaaggaaagaagGGAGGAAAGCAAGGAAATAGAGAAAGGA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16367776 884 + 178775436 --CACATGTATAGAAAGATACACA--CATGTAAAGT---ATGAACAATCCTCAAGTACAATGAttcaaata-------------aattacatataattaatCC---TTATATTgctcagaatatattt----------------taaatatatttggtaATTTACTGCTGATGCAACAATTGTAGCTGCAATTGTAGCTGTGGgtactcatcttttttatttatgtatgccTGTAACTGTACTTACCTAAATTGATAGGT----AATAAAGAAGGAGGAGTACAAAGCAATTCAAATATAATGCTTAGTTCAAGGGAGGTACTTTAAGTCTCTtcttaatta---aagaaat-----aaa-------gattc--tGGGAAACTAAtcattgaatttgaattttgccatttaaaattttatgaaa-cacTAATGAATAAGATATAATGTCCATG--TTTATATACATTCCTATAAATCTTAAGTATTTGCTTGCATCTACATATCTATTCAGTTTTGATTATCTATGCCTTTTTGGCAGTTTTATCCAATGTATTTCTTTTGGGG----GGAGAAAACAACTTTTAACAATACTTATAAGACTCATGATTATTTCTCTCCTCTGCTGATTTTGCCAAAGagctttaaaacatgttttatcaTTCCTTCATTACATGGATGAATAAGCCTATTTGAGCATTTATTTACTAACTT-CACAGTTGctctaattttctaaattttgtgttttgaatC-CTCTGCTGTGTCTGTAAAATGACCTTGAAGTGAAGTTGTATCTGCAAGTCACATAAAGCCATAAGAGATCATAGAGATCGTTAAAATGTATTCAGACTTTTTG-AGTATTTGCAAGACTGtgtgg-gaaagaaaaagaggaggaagaggagaaagaagaaagaaaggaaagacgggaggaaagcaaggaaatagagaaagga i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19854339 884 - 48547382 --CACATGTATAGAAAGATACACA--CACATAAAGT---ATGAATAATCCTCAAGTACAATGATTCAAATA-------------AATTACATATAATTAATCC---TTATATTGCTCAGAATATATTT----------------TAAATATATTTGGTAATTTACTGCTGATGCAACAATTGTAGCTGCAACTGTAGCTGTGGGTACTCATCTTTTTTATTTACGTATGCCTGTAACTGTACTTACCTAAATTGATAGGTTCAGAATAAAGA---AGGAGTACGAAGCAATTCAAATATAATGCTTAGTTCAAGGGAGGTACTTTAAGTCTCTTCTTAATTA---AAGAAAT-----AAA-------GATTC--TGGGAAAGTAATCACTGAATTTGAATTCTGCCATTTAAAATTTTATGAAA-TACTAATCAATAAGATATAATGTCCATG--TTTATATACATTCCTATAAATCTTAAGTATTTGCTTGTATCTACATATCTATTCAGTTTTGATTATCTATGCCTTTTTGGCAGTTTTATCCAATGTATTTCTTTTGGGG----GGA-AAAACAATTTTTAACAATACTTATAAGACTCATGATTATTTCTCTCCTCTGCTGATTTTGCCAAAGAGCTTTAAAACATCTTTTATCACTCCTTCATTACATGGATGAATAAGCCTATTTGAGCATTTATTTACTAACTT-TGCAGTTGCTCTAGTTTTCTAAATTTTGTGTTTTGAATC-CTCTGCTGTGTCTGTAAAATGACCTTGAAGTGAAGTTGTATCTGCAAGTCACATAAAGCCATAAGAGATCATAGAGATCGTTAAAATTTATTCAGACTTTTTG-AGTATTTGCAAGACTGTGTGG-GAaagaaaaagaggaggaagaggagaaagaagaaagaaaagaaagaagGGAGGAAAGCAAGGAAATAGAGAAAGGA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21210259 880 - 190850796 --CACATGCATAAAAAGATACACA--CATGTAAAAT---ATGGATAATTCTCAAGTACGGTGATTCAAAGa-------------aattaaatataatt-atctttattatattgctcaaaatatattt----------------taaatatatttGGTCATTTACTGCTGATGCAACAATTGCAGCTGC-ACTGTAGCTGTGGGTACCCATCTTTTTGATTTATATATGGCTGTAACTGTATTTGTCTAAATTGATAGGCTGAAAATAAAGAAGGAGGAGTACAAAGCAATGAAAATATAATGCTTAGTCCAAGGGAGGTACTTTAAGTTTCTGCATAATTA---AAGAAATAAACAAAA-------GATTC--TGAGAAACTAATCACTGAATCTGAATTTTGCCATTTAAAATTTTATGAAA-CACTAATGAATAAAATATAATGTTCATG--TTTATACACATTCCTATAAATGTTAA-TATTAGCTTGCATCAACACATCTATTCAGCTTTGATTATCTAT-TCTTTTTGGCAGTTTTATCCAATATATTTATTTT-GGG----GCAAAAAGCAGTTTTTAACAATACTTATAAAACCTGTGATTATTTCTTTCTTCTGTTGGTTTTGCCAAAGAGCTTAAAAACATCTTTTATCACTCCTTCATTACATGGATGAATAAACTTATTTGGGCATTTATTTACTAACTT-TGCAGTTGCTCTAGTTTTCTAAATTTTGTGTTTTTAATC-CTCTGCTGTGTCATTAAAATGACCTTGGAGTTAATTTGTATCTGCAAGTCACATAAAGCCATAAGAGATCAT---------TAAAATTTATTTAAACTTTTTTCAGTATCTGTAGGACAGTGTGgaaaaagaaaaagaggaggaagagaaggaagaagaaag----gaaagaagGGAGAGAGTGAAGGAAATAGAGAAAGAC i calJac3.chr3 C 0 C 0 s mm10.chr5 49198161 817 + 151834684 --cacacacacacacacacacaca--aacaTAATATATAATGGATAATTGTCAAGACTAATCACTTAAACAGTTATATAAAAAGAGTTACATAAAAGTAATCCTACTTATATTATTCACTAAGTATTTGGCTTATATTATTTACTAAATAT-TTGAATAAATTACTGCTGATGCTATGATATTGGTTGTAGTTATAGATA-----ACTGTTTTTTTTTAATT-TATATGGCTTTA----TACT---------TGGTAGGTTCACAGCAAAAA---CAGAGTAGATATCAATTAATGTATAATATTTACTCCATGAGATATCTCTTGAAATGACTTTTAGTTGAGTAATAAAA-----GAA-------AAATC--TGTGGCAAAAGT------ATTTAAAATCTTTCGCTTAACATTTTATGAGGCCATTAACACATAAGAAGTACTGTTCATG--TTTATGTATTTCCCTATAAATTTTAAGTGTGCTCTCTCATCTACATCTTTGCTTTGTTTCAATTTTCTGGTCTGCTTTAGCATTTGTATCCTCTATCATTAGTTTTGAG-------AAAAACAACTTT--ACAATCCTTTAGAGACTGATGAGTTTGTCTGTCTTCTATTTGCATTGCTAGGAAGCTTTAAAATGTCTTTTATCA--CCTTCATTATATGGATGAAGAAAC----TTGGGCATTTATTTACTAAGTT-TGCTATT----TGACTTTCTGAA------ACTTCAATCC-CTCTGCTGTCTCAGTAGAGTGACATGGGAGTGAAGTTACATCTCCA----TCTAAGAACTATAATGCATGACTTGGAT-----------------ACTTTTAG--GTAATTTTAAGAT------G-ACTAGCAGCATGGGAGGAGTAAAAGTGGGGAGTGAAAGACAAAA-------------------------------- i mm10.chr5 I 42 C 0 s canFam3.chr3 3790090 841 - 91889043 AATACATATA---AAAGATACACAGGTATGTAAAGT---ATAGATAATCCTAAAGTACAACCATCTAAAGA-------------AATTATGGATGATTGATCC---TCATATTATACAGAATATATTT--------------CTTCAATATATTTGATCAGTTACTGCTGAATCTATAATTC--------ATTGTAGCTATAGATATTCATCTTATTTACAAATTTACAC----------ACTTTTCTAAAATGATAGATTTAGAATGAAGA----AGAGTCAGAATCAAT-----TATAATGCTTAGTCCATCAGAAGTGCTTTAAAATCCTCCTTAATTG---TATAAAT-----AAATGAAAATAATTCTGTGGGGGACTAATTATTGGATTTAAATTCTTCCATTTTAAATCCTGTTAAA-GGGTA------AAAAAATAATGCCCATGGTTTTATTTGCATTCCTATAAATGTTAACTGTATGCTCGCATCTACAAACCTATTCTGTTTCAACTATCTTT-TCTTTTTGGCATTTGCATTCTATGTATTTATTTTCGGGGGTGGGGGGAAGCAACTTTTGG-AATCCTTAGGAGACTCATGATAATGTCTCTCCTCTGTTACTACAGCTA-AGAGCTTTAAAATATCTTTTATCACTCCTTCATTACATGGATGGATAAGCTTATTTGGGCATTTATACACTAATTTCTGCAGTTTCTCTAGTTTTCTGAATTCTGTGTTTTGAGTCACACTGCCCCATCAGCAAGATGAC--TGGCATTCAGTAATATCCCCAAATTAGATAAAATCAT-AGAGATAATGGAAAC----------TACTCAGGTATTTTG-AATGGCTGTAAGAATGTGTGG-----GAGGAAGAAGGGAGAGAGAAGAAGGGAACCGGAAAGGAAAGAAAGAACAAAGTAAAAA-------------- i canFam3.chr3 C 0 C 0 a score=340591.000000 s hg38.chr4_KI270790v1_alt 89266 121 + 220246 tgtaagacttcaaatgcaaagaagaaag----TGCAAAATCCAGTCAAATGTTTTGGCTGGTTGAGAAATGAAAGCAGGTAAGATATTACATTTTATTAACTAAGAGGCCAACTACTTTTGAATA-- s panTro4.chr4 21477575 121 + 193495092 TGTAAGACTTCAAATGCAAAGAAGAAAG----TGCAAAATCCAGTCAAATGTTTTAGCTGGTTGAGAAATGAAAGCAGGTAAGATATTACATTTCATTAACTAAGAGGCCAACTACTTTTGAATA-- i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21653067 121 + 198332218 TGTAAGACTTCAAATGCAAAGAAGAAAG----TGCAAAATCCAGTCAAATGTTTTAGCTGGTTGAGACATGAAAGCAGGTAAGATATTACATTTCATAAACTAAGAGGCCAACTACTTTTGAAAA-- i ponAbe2.chr4 C 0 C 0 s rheMac3.chr5 16731563 121 + 184069350 TGTAAGACTTTAAATGCAAAGAAAAAAG----TGCAAAATCCAGTCAAATGTTTTAGCTGGTTGAGAAATGAAAGCAGACAAGATATTACATTTCATAAACTGACAGGCCAATTACTTTTGAAAA-- i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20772711 121 + 189454096 TGTAAGACTTTAAATGCAAAGAAAAAAG----TGCAAAATCCAGTCAAATGTTTTAGCTGGTTGAGAAATGAAAGCAGACAAGATATTACATTTCATAAACTAACAGGCCAATTACTTTTGAAAA-- i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16368660 121 + 178775436 TGTAAGActttaaatgcaaagaaaaaag----tgCAAAATCCAGTCAAATGTTTTAGCTGGTTGAGAAATGAAAGCAGACAAGATATTACATTTCATAAACTAAGAGGCCaattacttttgaaaa-- i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19855223 121 - 48547382 TGTAAGACTTCAAATGCAAAGAAAAAAG----TGCAAAATCCAGTCAAATGTTTTAGCTGGTTGAGAAATGAAAGCAGAGAAGATATTACATTTCATAAACTAAGAGGCCAATTACTTTTGAAAA-- i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21211139 121 - 190850796 TATAAGACTACAAATGCAAAGAAGAAAA----TGCAAAATCCAGTCAAATGTGTTACCTAGTTGAGAACTGAAAGCAGATAAGGAATCACATTTCATAAACTAAGAGGCCAACTACTTTTTAAAA-- i calJac3.chr3 C 0 C 0 s mm10.chr5 49198978 119 + 151834684 TTTACATTCACAAACACAAAAGTAAAAG-----GCAAAATCCAAACAGGAACTTTAATTA-TCTAGAGTTGTCAGTAGATGAAGAACTAGAGTACACCAACCAAAATTCCAACTCTTTTATGATA-- i mm10.chr5 C 0 I 137 s canFam3.chr3 3790931 124 - 91889043 TGCAAGACCTTGAATGCAAAGAAAGAAGAAAATGCAAAATCCAATGAAGTAATTTACTTGGTTAAGAGATGAGAGCAGGCAAGGAAT---ATTATGTGAACTAAGAGGCCAAGTCCTTTTTACAACA i canFam3.chr3 C 0 C 0 e nomLeu3.chr20 20265496 53 - 85365473 I a score=497003.000000 s hg38.chr4_KI270790v1_alt 89387 203 + 220246 TTTTGAAGCCCACAATATCTGCAGCTCCAGGTACC-TTGCCGGCTAAGCTAAAATCACGGGGTCCAACTTCTGTTATTTGGAAAGGCAATTGCCTGAGTGGCCATGAATCTTCCAATCTTAAGACAATTAAAAGTAAGTAG----------------------------------------------------------------------------------CAATGAT------AAAAAAAAAAATCCAGTTAAATGAATGCTAATGACCTGTCTGACTAGCGATGTGtc s panTro4.chr4 21477696 202 + 193495092 TTTTGAAGCCCACAATATCTGCAGCTCCGGGTACC-TTGCCGGCTAAGCTAAAATCACTGGGTCCAACTTCTGTTATTTGGAAAGGCAATTGCCTGAGTGGCCATGAATCTTCCAATCTTAAGACAATTAAAAGTAAGTAG----------------------------------------------------------------------------------CAATGAT-------AAAAAAAAAACCCAGTTAAATGAATGTTAATGACCTGTCTGACTAGCGATGTGTC i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21653188 192 + 198332218 TTTTGAAGCCCACAATATCTGCAATTCCA------------GGCTAAGCTAAAATCACTGGGTCCAACTTCTGTTATTTGGAAAGGCAATTGCCTGAGTGGCCATGAATCTTCCAATCTTAAG--AATTAAAAGTAAGGAG----------------------------------------------------------------------------------CAATGATA----AAAAAAAAAAAACCCAGTTAAATGAATGCTAATGACCTGTCTGACTAGTGATGTGTC i ponAbe2.chr4 C 0 C 0 s rheMac3.chr5 16731684 201 + 184069350 TTTTGAAGCCCACAATATCTGCAGCTCCAGGTACC-TTACCGGCCAAGCTAAAATCACTGGGTCCAACTTCTGTTATTTGGAAAGGCAATTGCCTGAGTGGCCATGAATCTTCCAATCTTAAGAAAATTAAAAGTAAGTAG----------------------------------------------------------------------------------CAATGAT--------AAAAATAACCCCAGTTAAATTAATGCTAATGACCTGCCTGACTAGCGATGTGtc i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20772832 200 + 189454096 TTTTGAAGCCCACAATATCTGCAGCTCCAGGTACCTTTACCGGCCAAGCTAAAATCACTGGGTCCAACTTCTGTTATCTGGAAAGGCAATTGCCTGAGTGGCCATGAATCTTCCAATCTTAAGAAAATTAAAAGTAAGTAG----------------------------------------------------------------------------------CAATGAT--------AAAAATAACCCCAGTTAAATTAATGCTAATGACCTGCCTGACTAGCGA--TGtc i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16368781 201 + 178775436 ttttgaagCCCACAATATCTGCAGCTCCAGGTACC-TTACCGGCCAAGCTAAAATCACTGGGTCCAACTTCTGTTATTTGGAAAGGCAATTGCCTGAGTGGCCATGAATCTTCCaatcttaagaaaattaaaagtaagtaG----------------------------------------------------------------------------------CAATGAT--------AAAAATAACCCCAGTTAAATTAATGCTAATGACCTGCCTGACTAGCGATGTGTC i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19855344 201 - 48547382 ATTTGAAGCCCACAATATCTGCAGCTCCAGGTACC-TTACCAGCTAAGCTAAAATCACTGGGTCCAACTTCTGTTATTTGGAAAGGCAATTGCCTGAGTGGCCATGAATCTTCCAATCTTAAGAAAATTAAAAGTAAGTAG----------------------------------------------------------------------------------CAGTGAT--------AAAAATAACCCCAGTTAAATTAATGCTAATGACCTGTCTGACTAGCGATGTGtc i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21211260 201 - 190850796 TTTTAAAGCCCACAATATCTGCAGCTCCAGGTACC-TTGCCAGCTGAGTTAAAATCACTAGGTCCAGCTTCTGTTATTTAGAAAGGCAATTGCCTGAGTGGCAATGCATCTTCCAATCTTAAGAAAATCAAAATTAAGCAG----------------------------------------------------------------------------------CAGAGAT--------AAAAATAACCCCAGTTAAATGAATGTTAATGACCTGTCTGACTAGCAATGTGTC i calJac3.chr3 C 0 C 0 s canFam3.chr3 3791055 284 - 91889043 TTTTGAAGCCCATGACACCTGCAACTCCAAGTACC-CTGTCAGCTGAACTGAAATCACTGGGCCCAACATCAGTCAGGTGGGTAGGCA------TGAGTGGCCACTCATCATCCAATCCTAAGAGAAT-AGAACTAAATAGGAATTATTGAAAATAATCTcattgagaaatggacagaattgttgaatcaatatgttgtatactcgaaactaatactgtatgtcaatgatacttcaataaTATTAACCCCAGAAAAAAGAATGGTAATGGTCTCCCTGACTAGAAATGGATC i canFam3.chr3 C 0 C 0 e mm10.chr5 49199097 137 + 151834684 I e nomLeu3.chr20 20265496 53 - 85365473 I a score=818895.000000 s hg38.chr4_KI270790v1_alt 89590 313 + 220246 tttcaatcccaga-----tgaaa------aatcacaaacaaaaagatttaacaaaatcaaaactataatatctgaaattatagaattggattctcatgtctaaggatttgcacatttaggcaatttatgtttctgagatgct-taaacaaatt--taatctagtagactgatagtc-----ttatagtttaaaatatattttaatcaa-----aatata--atgaagtaactgat--agacttgtgattttaagttgaaattttagtagacttctgttcggtaatgggaaatctaaga-tttttttcattcgtcg-attataaat-------tttaggttttacttttat---------- s panTro4.chr4 21477898 317 + 193495092 TTTCAATCCCAGA-----TGAAA------AATCACTAACAAAAAGATTTAACAAAATCAAAACTATAATATCTG-AATTATAGAATTGGattctcatgtctaaggatttgcacatttaggcaatttatgtttctgagatgct-taaacaaatt--taatctagtagactgatagtcttatattatagtttaaaatatattttaatcta-----aatata--atcaagtaactgat--agacttgtgattttaagttgaaattttagtagacttctgttcagtaatgggaaatctaaga-tttttttcatttgtcg-attataaat-------tttaggttttacttttat---------- i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21653380 317 + 198332218 TTTCAATCCCAGA-----TGAAA------AGTCACAAACAAAAAGATTTAACAAAATCAAAACTATAATATCTGAAATTATAGAATTGGATTCTCATGTCTAAAGATTTGCACATTTAGGCAATTTATGTTTCTGAGATGCT-TAAACAAATT--TAATCTAGTAGAGTGATAGTCTTGtattatagtttaaaatatattttaatcaa-----aatata--atCAAGTAACTGAT--AGACTTGTGATTTTAAGTTGAAATTTTAGTAGACTTCTGTTCAGTAACAGGAAATCTAAGA--TTTTTTCATTCGTCG-ATTATAAAT-------TTTAGGTTTTACTTTTAT---------- i ponAbe2.chr4 C 0 C 0 s rheMac3.chr5 16731885 322 + 184069350 tttcaatcccaga-----tgaaa------aatcacaaacaaaaagattcaacaaaatcaaaactataatacttgaaattatagaactggattctcatgtctaaggatttgtacattta-gcaatttttgcttctggaatgct-taaacaaatt--taatctagtagagtaatagtcttgtattgtagtttaaaatatattttaatcaaaatataatata--atcaagtaactgat--agacttgtgattctaagttgaaattttagtagacttctgctcagtaatggg-aatctaagattttttttcattcatcg-attataaat-------tttaggttttacttttat---------- i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20773032 323 + 189454096 tttcaatcccgga-----tgaaa------aatcacaaacaaaaa-attcaacaaaatcaaaactataatatttgaaattatagaactggattctcatgtctaaggatttgtacatttaggcaatttttgcttctgggatgct-taaacaaatt--taatctagtagagtaatagtcttgtattgtagtttaaaatatattttaatcaaaatataatata--atcaagtaactgat--agacttgtgattttaagttgaaattttagtagacttctgctcagtaatgggaaatctaagattttttttcattcattg-attataaat-------tttaggttttacttttat---------- i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16368982 324 + 178775436 TTTCAATCCCAGa-----tgaaa------aattacaaacaaaaagattcaacaaaatcaaaactataatacttgaaattatagaaatggatTCTCATGTCTAAGGATTTGCACATTTAGGCAATTTTTGCTTCTGGGATgct-taaacaaatt--taatctAGTAGAGTAATAGTCTTGTAttgtagtttaaaatatattttaatcaaaatataatata--atcaaGTAACTGAT--AGACTTGTGATTTTAAGTTGAAATTTTAGTAGACTTCTGCTCAGTAATGGGAaatctaagattttttttcattcatcg-attataaat-------tttaggttttacttttat---------- i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19855545 324 - 48547382 tttcaatcccaga-----tgaaa------aatcacaaacaaaaagatttaacaaaatcaaaactataatatttgaaattatagaactggattcccatgtctaaggatttgtacatttaggcaatttatgtttgtgagaggct-taaacaaatt--taatctagtagagtgatagtcttgtattgtagtttaaaatatattttaatcaaaatataatata--atcaagtaactgat--agacttgtgattttaagttgaaattttagtagacttctgctcagtaatgggaaatctaagattttttttcattcattg-attataaat-------ttttggttttacttttat---------- i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21211461 308 - 190850796 TTTCAATCCCAGAT----TAAAA------AATCACAAATGAAAAGATTTAACAAAATAAATGCTATAATATTTGAAAGAATAGTATTGGTTTCTCGTATCTAAGGATTTGTACATTTAGGTAATTCATGTTTCTGAGATGCT-TAAAGAAATG--TAATCTATTAGAGTGATAGTCTTGCATTATACTTTCAAATATAAC---------------------ATTAAGTAACTGATACAGATTTGTGATTTTAAGCTGAAATTTTAGTAGACTTATGTTCAGTAATGAGAAGTCTAAGATTTTTTTCCATTCATCA-ATTATAAAC-------TTCAGGTTTTACATTTAT---------- i calJac3.chr3 C 0 C 0 s mm10.chr5 49199234 305 + 151834684 TTTCAAGATCAGG-----AAAAACAATGTAATCACAAACAGAAAG-------TAAACCAAGATCATAGGATTTAAAAATTTTAAATTGATTTCTCATACCTAAGAAACTGCACATTTATATGA----TGCCCATGGGGCTTT-TAAAGAATTTCCTATTCTAATGTATACATAATCTTG------AATTTGAGATATA---------------AATGTAAGAATAAGTCATTGGTATATATTTCTGATTTCATGTTAAAATATTAGTCAACTTTTGTACAGTAATAAGAAATCTAAGATACTTGCTTCTTTATTATACTTAAAAT-------CTTAAATTTTACTACTAT---------- i mm10.chr5 I 137 I 1207 s canFam3.chr3 3791339 322 - 91889043 TTTCCATCCCAGAGAAGATAGAA------AATCAAAAGTG--AAGATTTAACAAAGTCAAAATTATTGTTTAT-AGTTTACAGAATTGATTTCTCATGTCAATAAATTTGCACATTTGGACAATTTATGTTCCTGAAATTATGGAAAAAAAAC--TGATCTAGTGGAGTGATAGTATTGTACTA---TTCAAAATATGA--------------AAT-----TTTAGTTGAC--AT--AGATATGGGATTTTACATTAAAATTTTAGTAGACTTCTATGTAGTAATGAGCGACCGAAGAGCATTTTTTATTCACTG-ATTATGATTAGGTTTCCTTTGTTTTTGTTTTTGTTCGATTTTAC i canFam3.chr3 C 0 C 0 e nomLeu3.chr20 20265496 53 - 85365473 I a score=312130.000000 s hg38.chr4_KI270790v1_alt 89903 117 + 220246 aaaaattatttagtgaataggaaagtttgattaagttagagagttacctcaaaatgaagtaaaatatattaattttTGAATAATATACCTTCTATTACTACATATAA-TAGTGCTAAT s panTro4.chr4 21478215 118 + 193495092 aaaaattatttagtgaataggaaagtttgattaagttagagagttacctcaaaatgaagtaaaatatattaattttTGAATAATATACCTTCTATTACTACATATAATTAGTGCTAAT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21653697 118 + 198332218 AAAAATTATTTAGTGAATAGAAAAGTTTGATTAAGTTAGACAGTTACCTCAAAATGAAGtaaaatatattaatttttgaataatataCCTTCTATTACTACACATAATTAGTGCTAAT i ponAbe2.chr4 C 0 C 0 s rheMac3.chr5 16732207 118 + 184069350 aaaaattatttagtgaataaaaaagtttgattaagttagagaattacctcaaaatgaagtaaaatatattaattttTGAATAATATACCTTCTATTACTACACATAATTAGTGCTAAT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20773355 114 + 189454096 aaaaattatttagtgaataaaaaagtttgat----ttagagaattacctcaaaatgaagtaaaatatattaattttTGAATAATATACCTTCTATTACTACACATAATTAGTGCTAAT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16369306 118 + 178775436 aaaaattatttagtgaATAAAAAAGTTTGATTAAGTTAGAGAATTATctcaaaatgaagtaaaatatattaatttttgaataatataCCTTCTATTACTACACATAATTAGTTCTAAT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19855869 118 - 48547382 aaaaattatttagtgaataggaaagtttgattaagttagagaattacctcaaaatgaagtaaaatatattaattttTGAATAATATACCTTCTATTACTACACATAATTAGTGCTAAT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21211769 115 - 190850796 TACAATTATTTAGTGAGTAGAAAAGTTTGATTAAGTTAGAGAGTTACCTCAAAATGACGTAAA--ATGTTAATTTTTG-ATAATGTACCTTCTACTACTACATATAATTAATGCTAAT i calJac3.chr3 C 0 C 0 s canFam3.chr3 3791661 114 - 91889043 AATAATTGTTTAGTGCATGGGAAAATTTGTTAAAGCCAG----TTATCTAAAAATGACGTAAAATATAGTATCTTTATAAATATGTATCTTCTATTACTACATATAATTGGGGCTAAT i canFam3.chr3 C 0 I 188 e mm10.chr5 49199539 1207 + 151834684 I e nomLeu3.chr20 20265496 53 - 85365473 I a score=353914.000000 s hg38.chr4_KI270790v1_alt 90020 143 + 220246 GAAATGGTAGTATCTATTGTTGCAATGCAGATGTGGAGTCATTTGCTTAAAGCCCATTAAATTGTTTAGAAACCTAAGAGTAACAGATGAATGCCTACTTTTTG----------------------------------------------------------------------CTGTGTCTAaatcatcctacgtgttagttgctcttgcta s panTro4.chr4 21478333 143 + 193495092 GAAATGGTAGTATCTATTGTTGCAATGCAGATGTGGAGTCATTTGCTTAAAGCCCAATAAATTGTTTAGAAACCTAAGAGTAACAGATGAATGCCTACTTTTTG----------------------------------------------------------------------CTGTGTCTACATCatcctacgtgttagttgctcttgctg i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21653815 143 + 198332218 GAAATGGTAGTATCTATTGTTGCAATGCAGATGTGGAGTCCTTTGCTTAAAGCCCAATAAATTGTTTAGAAACCTAAGAGTAATAGATGAATGCCTACTTTTTG----------------------------------------------------------------------CTGTACATAaatcatcctatgtgttagttgctcttgcta i ponAbe2.chr4 C 0 C 0 s rheMac3.chr5 16732325 143 + 184069350 GAAATGGTAGTATCTACTGTTGCAATGCAGATGTGGAGTCCTTTGCTTAAAGACCAATAAATTATTTAGAAACCTAAGAGAACCAGATGAATGCCTACTTTTTG----------------------------------------------------------------------CTGTATGTAaatcatcctatgtggcagttgctcttgcta i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20773469 143 + 189454096 GAAATGGTAGTATCTACTGTTGCAATGCAGATGTGGAGTCCTTTGCTTAAAGATCAATAAATTATTTAGAAACCTAAAAGAACCAGATGAATGCCTACTTTTTG----------------------------------------------------------------------CTGTATGTAaatcatcctatgtggtagttgctcttgcta i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16369424 143 + 178775436 GAAATGGTAGTATCTACTGTTGCAATGCAGATGTGGAGTCCTTTGCTTAAAGAccaataaattatttagaaaccTAAGAGAACCAGATGAATGCCTACTTTTTG----------------------------------------------------------------------CTGTATGTAAATCATCCTATGTGGTAGTTGCTCTTGCTA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19855987 143 - 48547382 GAAATGGTAGTATCTACTGTTGCAATGCAGATGTGGAGTCCTTTGCTTAAAGACCAATAAATTATTTAGAAACCTAAGAGAACCAGATGAATGCCTACTTTTCG----------------------------------------------------------------------CTGTATGTAaatcatcctatgtggtagttgctcttgcta i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21211884 143 - 190850796 GAAGTGGTAGTATCTATTGTTGCAATGCAGATGAGGAGTCCTTTGCTTCAAGCCCAATAAATTGTTTAGACACCTAAGAGTAACAAGTGAATGCCTACTTTTTT----------------------------------------------------------------------CTGTATATAaatcatcctatgtgatagttgctctaacta i calJac3.chr3 C 0 C 0 s canFam3.chr3 3791963 211 - 91889043 AAAATAGTAGTATCTTTTGCTGTAGTATAGAAGTTGAGTCTTT--CTTTATGTCAACTAACCTGCCCAGCAACTTAAGAATGCCAAGTATCTACCTACTCTTTGTTATGCTAATAACTACACTCTTGCTAACCATTCCTTGCTGCTTTTACTCCCTGCTAGAGTATGCCAACTTCTGTCCACCTATCatcctatgagatagttgttcttattg i canFam3.chr3 I 188 I 2 e mm10.chr5 49199539 1207 + 151834684 I e nomLeu3.chr20 20265496 53 - 85365473 I a score=88569.000000 s hg38.chr4_KI270790v1_alt 90163 37 + 220246 tccatttatagataaagaaactctagaaca----------------------------------------------aggggta s panTro4.chr4 21478476 37 + 193495092 tccatttatagataaagaaactctagaaca----------------------------------------------aggggta i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21653958 37 + 198332218 tccatttacagataaagaaactctagaaca----------------------------------------------aggggta i ponAbe2.chr4 C 0 C 0 s rheMac3.chr5 16732468 37 + 184069350 tccacttatagataaagaaactccagaaaa----------------------------------------------aggggta i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20773612 37 + 189454096 tccacttatagataaagaaactccagaaaa----------------------------------------------aggggta i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16369567 37 + 178775436 TCCacttatagataaagaaactccAGAAAA----------------------------------------------AGGGGTA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19856130 37 - 48547382 gccacttatagataaagaaactccagaaaa----------------------------------------------aggggta i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21212027 37 - 190850796 tctatttatagataaagaaactctagaaaa----------------------------------------------aggggta i calJac3.chr3 C 0 C 0 s mm10.chr5 49200746 29 + 151834684 TCCATTTGTAACTGAAGAAACT------------------------------------------------------ATCCCTA i mm10.chr5 I 1207 C 0 s canFam3.chr3 3792176 83 - 91889043 tctatttgtagatgaacaaaATAGAAAACAAGAACtttttttaaagattttatttattcatgagagacacacagagagaggca i canFam3.chr3 I 2 I 132 e nomLeu3.chr20 20265496 53 - 85365473 I a score=460016.000000 s hg38.chr4_KI270790v1_alt 90200 172 + 220246 aaggaatttaagtaatctgac---------------------catgtttgctcagctagtaattttaggaaccagaatttttacctagggttgtgtgatttcagTAT-AAAAGACTTATTAAACATTGTAATACAGCAATATACAGTAATACCACCTCTATCTTGTTTAACACGATATATTTTGCTCCTCAAAT s panTro4.chr4 21478513 172 + 193495092 aaggaatttaagtaatctgac---------------------cgtgtttgctcagctaataattttaggaaccagaatttttacctagggttgtgtgatttcaGTAT-AAAAGACTTATTAAACATTGTAATACAGCAATATACAGTAATACCACCTCTATCTTGTTTAACACGATATATTTTGCTCCTCAAAT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21653995 172 + 198332218 aaggaatttaagtaatctgac---------------------tgtgtttgctcagctaataattttaggaaccagaatttttacctagggttgtgtgatttcagTAT-AAAAGACTTATTAAACATTGTAATACAGCAATATACAGTAATACCACCTCTATCTTGTTTAACACATTATATTTTGCTCCTCAAAT i ponAbe2.chr4 C 0 C 0 s rheMac3.chr5 16732505 172 + 184069350 aaggaatttaagtaccctgac---------------------cgtgtttgctcagctaataattttaggaaccagaatttttacttagggttgtgtgatttcagTAT-AAAAGACATATTAAACATTGTAATACAGTAATATAAAGTAACACCACCTCTATCTTGTTTAGCATAATATCTTTTGCTCCTCAAAT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20773649 172 + 189454096 aaggaatttaagtaccctgac---------------------cgtgtttgctcagctaataattttaggaaccagaatttttacttagggttgtgtgatttcagTAT-AAAAGACATATTAAACATTGTAATACAGTAATATAAAGTAACACCACCTCTATCTTGTTTAGCATAATATCTTTTGCTCCTCAAAT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16369604 172 + 178775436 AAGGAATTTAAGTACCCTGAC---------------------CATGTTTGCTCAGCTAATAATTTTAGGAACCAGAATTTTTACTTAGGGTTGTGTGATTTCAGTAT-AAAAGACATATTAAACATTGTAATACAGTAATATAAAGTAACACCACCTCTATCTTGTTTAGCACAATATCTTTTGCTCCTCAAAT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19856167 167 - 48547382 aaggaatttaagtaccctgac---------------------cgtgtttgctcagctaatcattttaggaaccagaatttttacttagggttgtgtgatttcagTAT-AAAAGACATATTAAACATTGTAATACAGTAATATAAAGTAACACCACCTCTGTCTTGTTTAGCACAATATCTTTTGTTCCT----- i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21212064 172 - 190850796 aaggaatttaagta-cctgac---------------------catgtttgctcagctaataattttaggaaccaaaatttttacttaaggttgtgttatttcagTATAAAAAAACTTATTAAACATTGTAATCCAGCAATATGAAGTAATACTACCTCTAGCTTGTTTAACACAATAGCTTTTTCTCCTTAAAT i calJac3.chr3 C 0 I 151 s mm10.chr5 49200775 163 + 151834684 AATGAATGTAAGTAATCCAAC---------------------TGTATTTTTATCCATACTAGCTTTAAGAGCCAGAATTTTTACTTAGAGTTGTATGAATTCATAAT-AAAATGCTTTTTATGAGCAATAAC----CAATATAGGCCAATATTATTTCATTTTTG-AAAGTAAAAGATCTTTCATTAGTT---- i mm10.chr5 C 0 C 0 s canFam3.chr3 3792391 184 - 91889043 AAGGACTTTAAGTAAGTTTACACACTCAAGCATAAACATGCTCAAGGTTACACACTTATTCACTTTAGGAACCAAATATTT----CAGAGTTGTGTGATTTCAGAGC-AAAATGT---TTAAACACCATAATCCAGGAATA-AATGTAATACCACCTCTACCTTGTTTAACACAA-AAATCTTTCACTTTAAGT i canFam3.chr3 I 132 C 0 e nomLeu3.chr20 20265496 53 - 85365473 I a score=-651.000000 s hg38.chr4_KI270790v1_alt 90372 2 + 220246 GG- s panTro4.chr4 21478685 2 + 193495092 GG- i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21654167 2 + 198332218 GG- i ponAbe2.chr4 C 0 C 0 s rheMac3.chr5 16732677 2 + 184069350 GG- i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20773821 2 + 189454096 GG- i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16369776 2 + 178775436 GG- i papAnu2.chr5 C 0 C 0 s mm10.chr5 49200938 1 + 151834684 -A- i mm10.chr5 C 0 I 1 s canFam3.chr3 3792575 2 - 91889043 -AT i canFam3.chr3 C 0 C 0 e chlSab2.chr27 19856334 0 - 48547382 C e calJac3.chr3 21212236 151 - 190850796 I e nomLeu3.chr20 20265496 53 - 85365473 I a score=76820.000000 s hg38.chr4_KI270790v1_alt 90374 27 + 220246 CAAGCATAAATGGGACCTTGGCAAATT s panTro4.chr4 21478687 27 + 193495092 CAAGCATAAATGGGACCTTGGCAAATT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21654169 27 + 198332218 CAAGCATAAATGGGACCTTGGCAAATT i ponAbe2.chr4 C 0 C 0 s rheMac3.chr5 16732679 27 + 184069350 CAGGTATAAATGGGACCTTGGCAAATT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20773823 27 + 189454096 CAGGTATAAATGGGACCTTGGCAAATT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16369778 27 + 178775436 CAGGTATAAATGGGACCTTGGCAAATT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19856334 27 - 48547382 CAGGTATAAATGGGACCTTGGCAAATT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21212387 27 - 190850796 CAGGTATAAATGGGACCTTAGCAAATT i calJac3.chr3 I 151 I 314 s mm10.chr5 49200940 27 + 151834684 CAGATATGAGTGTGATACTAGCAAAAT i mm10.chr5 I 1 I 10 s canFam3.chr3 3792577 25 - 91889043 CAGGTATAGC--AAATCAAATTAAATT i canFam3.chr3 C 0 C 0 e nomLeu3.chr20 20265496 53 - 85365473 I a score=168913.000000 s hg38.chr4_KI270790v1_alt 90401 62 + 220246 GCAGGATTATTTGCTATTGGAA--ATTTTTGTCTAAGAGTGAAAAATAACCCTCATTAATCTTT s panTro4.chr4 21478714 62 + 193495092 GCAGGATTATTTGCTATTGGAA--ATTTTTGTCTAAGAGTGAAAAATAACCCTCATTAATCTTT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21654196 62 + 198332218 GCAGGATTATTTGCTATTGGAA--ATTTTTGTTTAACAGTGAAAAATAACCTTCATTAATCTTT i ponAbe2.chr4 C 0 C 0 s rheMac3.chr5 16732706 62 + 184069350 GCAGGATTATTTGCTATTGGAA--ATTTTTGTTTAAGAGTGAAAAATAACCTTCATTAATCTTT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20773850 62 + 189454096 GCAGGATTATTTGCTATTGGAA--ATTTTTGTTTAAGAGTGAAAAATAACCTTCATTAATCTTT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16369805 62 + 178775436 GCAGGATTATTTGCTATTGGAA--ATTTTTGTTTAAGAGTGAAAAATAACCTTCATTAATCTTT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19856361 62 - 48547382 GCAGGATTATTTGCTATTGGAA--ATTTTTGTTTAAGAGTGAAAAATAACCTTCATTAATCTTT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21212728 62 - 190850796 GCAGAATTATTTATTACTGGAA--ATGTTTGTTTAAGAGTGAAAAATAACCTTCATGAATCTTT i calJac3.chr3 I 314 C 0 s mm10.chr5 49200977 56 + 151834684 TTAGTTCTGTTTGCTTTGGGAACCATTTTTA------AGTGGGCAATGAATCCCAATAATC--T i mm10.chr5 I 10 C 0 s canFam3.chr3 3792602 59 - 91889043 GTAGATCCCTTTGTTATTTGAC-----TTTTTCTCATAGTGAATAATGACTGTCATGGGTCTTT i canFam3.chr3 C 0 I 191 e nomLeu3.chr20 20265496 53 - 85365473 I a score=1045469.000000 s hg38.chr4_KI270790v1_alt 90463 346 + 220246 TATTTCCATACAGAGTTTCATAGATTGTCTATATTTAAGATAAAGCCAACT---------TTTACACGGACTAC------CTCTGAAAAATATAAATTGGATGCTA-TTTGTCTGAAGAAGTTAGGATGAGATTTGATATCCTTTTTTT-GGTACACTAAATTTAGACAAATTCAAGCAATTCTTTTGAAAATCACTGTGGGACAAAGATATTGAAAGACAAACT-AGAAAAGTAAAGTAGCT-AGT-GGAACATCTTTATCACTTTGATCAATTATTTCAAAAGCCTCCAAGAGGTCAGATTACTTCGCTTTAGGTTTCCAAATGTATTAGGACATTTTCAGTGTAAATGGA----------CAGTTAGTCTAGT s panTro4.chr4 21478776 346 + 193495092 TATTTCCATACAGAGTTTCACAGATTGTCTATATTTAAGATAAAGCCAACT---------TTTACACGGACTGC------CTCTGAAAAATATAAATTGGATGCTA-TTTGTCTGAAGAAGTTAGGGTGAGATTTGATATCCTTTTTTT-GGTACACTAAATTTAGACAAATTCAAGAAATTCTTTTGAAAATCACTGTGGGACAAAGATATTGAAAGACAAACT-AGAAAAGTAAAGTAGCT-AGT-GGAACATCTTTATCACTTTGATCAATTATTTCAAAAGCCTCCAAGAGGTCAGATTACTTTGCTTTAGGTTTCCAAATGTATTAGGACATTTTCAGTGTAAATGGA----------CAGTTAGTCTAGT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21654258 346 + 198332218 TATTCCCATACAGAGTTTCATAGATTGGCTATACTTAAGATAAAGCCAACT---------TTTACATGGACTAC------CTCTGAAGAATATAAATTGGATGCTA-TTTGTCTGAAgaagttaggatgagatttgatatccttttttt-ggtacactaaatttagacaaattcaagcaattcttttgaaagtcactgtgagacaaagatattgaaagacaaatg-agaaaagtaaagtagct-agt-ggaaCATCTTTATCACTTTGATCAATTATTTCAAAAGCCTCCAAGAGGTCAGATTACTTCGCTTTAGGTTTCCAAATGTATTAGGACATTTTCAGTGTAAATGGA----------CAGTTAGTCTAGT i ponAbe2.chr4 C 0 C 0 s rheMac3.chr5 16732768 348 + 184069350 TATTTCCATACAGAGTTTCATAGATTGGCTATATTTAAGATAAGGCCAACT---------TTTACATGGATGAC------CTCTGAAAAATATAAATTGGATGCTA-TTTGTCTGAAGAAGTTAGGATGAGATTTGATATCCTTTTTTTGGGTACACTAAATTTAGACAAATTCAAGCAATTCTTTTGAAAGTCACTGTGGGACAAAGATATTGGAAGACAAACT-AGAAAAGTAAAGTAGCTGAGT-GGAACATCTTTCTCACTTTGACCAATTATTTCAAAAGCCTCCAAGAGGTCAGATTACTTCGCTTTAGGTTTCCAAATGTATTAGGATATTTTCAGTGTAAAGGGA----------CAGTTAGTCTAGT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20773912 348 + 189454096 TATTTCCATACAGAGTTTCATAGATTGGCTATATTTAAGATAAGGCCAACT---------TTTACATGGACGAC------CTCTGAAAAATATAAATTGGATACTA-TTTGTCTGAAGAAGTTAGGATGAGATTTGATATCCTTTTTTTGGGTACACTAAATTTAGACAAATTCAAGCAATTCTTTTGAAAGTCACTGTGGGACAAAGATATTGGAAGACAAACT-AGAAAAGTAAAGTAGCTGAGT-GGAACATCTTTCTCACTTTGACCAATTATTTCAAAAGCCTCCAAGAGGTCAGATTACTTCGCTTTAGGTTTCCAAATGTATTAGGATATTTTCAGTGTAAAGGGA----------CAGTTAGTCTAGT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16369867 348 + 178775436 TATTTCCATACAGAGTTTCATAGATTGGCTATATTTAAGATAAGGCCAACT---------TTTACATGGACGAc------ctctgaaaaatataaattggatGCTA-TTTGTCTGAAGAAGTTAGGATGAGATTTGATATCCttttttttGGTACACTAAATTTAgacaaattcaagcaattcttttgaaAGTCACTGTGGGACAAAGATATTGGAAGACAAACT-AGAAAAGTAAAGTAGCTGAGT-GGAACATCTTTCTCACTTTGACCAATTATTTCAAAAGCCTCCAAGAGGTCAGATTACTTTGCTTTAGGTTTCCAAATGTATTAGGACATTTTCAGTGTAAAGGGA----------CAGTTAGTCTAGT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19856423 347 - 48547382 TATTTCCATACAGAGTTTCATAGATCGGCTATATTTAAGATAAGGCCAACT---------TTTACATGGACTAC------CTCTGAAAAATATAAATTGGATGCTA-TTTGTCTGAAGAAGTTAGGATGAGATTTGATATCCTTTTTTT-GGTACACTAAATGTAGACAAATTCAAGCAATTCTTTTGAAAGTCACTGTGGGACAAAGATATTGGAAGACAAACT-AGAAAAGTAAAGTAGCTGAGT-GGAACATCTTTCTCACTTTGACCAATTATTTCAAAAGCCTCCAAGAGGTCAGATTACTTCGCTTTAGGTTTCCAAATGTATTAGGACATTTTCAGTGTAAAGGGA----------CAGTTAGTCTAGT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21212790 340 - 190850796 TATTTCCATACAGAGCTTCTTAGATTGGGTATGTTTAAGATAAACCCAACT---------TTTACTTGGACTAC------CTCTGAAAAATATAAATTGGATGCCA-TTCATCTGAAGAAGTTAGGATGAGATTTGATATCTTTTTT---GTTATATTAAATTTAGACAAATTCAAGCAATTCTTTTGAAAGTCACTATGGGACACAGATACTGAAAGACAAACT-AGAAATGTAAAGTAGCTGAGT-GGAACATCTTTCCCACTTTGATCAATCATTTCAAAAGCCTCCAAGGGGTCAGATTACTCCACTTTAGGTTTCCAAATGTATTAGGACATTTACAGTTTAAATGA---------------CAGTCTAGT i calJac3.chr3 C 0 C 0 s mm10.chr5 49201033 351 + 151834684 GATTTCTGCATGAAGTGTTATATATTAATGAAGT--------AAGCCAACTGACAAAACATTTGCA--GTATCC------TACTGAAAGGTTATGGTTGATTTAAT-CCTGTCTCAAGAAATTACAGTAGATTTTAATATTCCTTCTT--AACACATTAAATTTAGACAAACTCAGGCAATCACTTTGAAAGTCTTTGTGA-ATAAAGAGAATGAAAGACTAACTCAGAAAAGCAA---AGCTAAGTAGAAACAGCTTT--TGCTTTGATCAATTATTTCAAACGCCTCAAAGTGGTCAAATTACTTCTCTCCAGATCTCCAATTGTATTAGAAAATTCCCAGTGTAAAGAGACATTGAATTCCAGCTGGCTTAGT i mm10.chr5 C 0 C 0 s canFam3.chr3 3792852 357 - 91889043 TATTTCAATACAGGTTTCCATACACTGGCTATATCTAAAGTAAACCCAACT---------GCTACATGGACTACAAAAAAAAAAAAAAAATAGAAATCGGATGCTATTTTGTCTTTAGAAATGAAGATGAGTTTTGATATCCCTCTT---AGTACACTGAATTTAGACAAATTCAGGCAATTCCTTTGAAAGTCACTGTGGGACAGAGAT--TGAAAGACAGA---GAAAAAATAAAGGATCAGACTAGAAACAGCTTT--CACTTTGATCAATTATTTCAAAAGCCTCAAAGTGGTCAAATTACTTCCCTCTAGATCCCCAATTGAATTAGCACATTTCCAGTGTAAACAGGTATTATAATTCAGTTGGCTCAGT i canFam3.chr3 I 191 C 0 e nomLeu3.chr20 20265496 53 - 85365473 I a score=120418.000000 s hg38.chr4_KI270790v1_alt 90809 43 + 220246 GAAAGTGTTGTTCCTCTGGCATTTTCTGAACTTTA---------------------------------------------------AAGG-ACAC s panTro4.chr4 21479122 43 + 193495092 GAAAGTGTTGTTCCTCTGGCATTTTCTGAACTGTA---------------------------------------------------AAGG-ACAC i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21654604 43 + 198332218 GAAAGTGTTGTTCCTCTGGCATTTTCTGAACTTTA---------------------------------------------------AAGG-ACAC i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20265549 43 - 85365473 GAAAGTGTTGTTCCTTTGGCATTTTCTGAACTTTA---------------------------------------------------AGAG-ACAC i nomLeu3.chr20 I 53 C 0 s rheMac3.chr5 16733116 42 + 184069350 GAAAGTGTTGTTCCTTTGGCG-TTTCTGAACTTTA---------------------------------------------------AAGG-ACGC i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20774260 42 + 189454096 GAAAGTGTTGTTCCTTTGGCG-TTTCTGAACTTTA---------------------------------------------------AAGG-ATGC i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16370215 42 + 178775436 GAAAGTGTTGTTCCTTTGGTG-TTTCTGAACTTTA---------------------------------------------------AAGG-ATGC i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19856770 43 - 48547382 GAAAGTGTTGTTCCCTTGGCGTTTTCTGAACTTTA---------------------------------------------------AAGG-ACGC i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21213130 43 - 190850796 GATAGTGTTGCTCCTTCAGAATTTTCTGAACTTTA---------------------------------------------------AAGG-ACAC i calJac3.chr3 C 0 C 0 s mm10.chr5 49201384 44 + 151834684 CTACATGTGGCACTTTCAATGCTTCCTGAATTCTA---------------------------------------------------AAAGAACAC i mm10.chr5 C 0 C 0 s canFam3.chr3 3793209 94 - 91889043 CTATGTGTTGTGTCTTTAGCATTCTCTAAATTTTATGTTTTTTAAGTCTCTCTCttttttaaaaagattttatttatttattcacgagga-acac i canFam3.chr3 C 0 I 176 a score=756898.000000 s hg38.chr4_KI270790v1_alt 90852 201 + 220246 TGGGGTGTTTCTGGGAGTAAAACAGCAAGTCTTCTTTGGTGGGATTCTTGC-GGGCTGGTCACTAAAATGCAAGT-GTGGTCCACGTTGAAATGAGTA-AAACTATTGACCTAT----GGCTCAGAAGCTAAGAGACCAAGG--------ATGACATAAACATGAACACT-AGCTGTTCCAAGGGACAATGCCATCTGGTTTGCTGTAGACGC---TGTC s panTro4.chr4 21479165 202 + 193495092 TGGGGTGTTTCTGGGAGTAGAACAGCAAGTCTTCTTTGGTGGCATTCTTGCTGGGCTGGTCACTAAAATGCAAGT-GTAGTCCACGTTGAAATGAGTA-AAACTATTGACCTAT----GGCTCAGAAGCTAAGAGACCAAGG--------ATGACATAAACATGAACACT-AGCTGTTCCAAGGGACAATGCCATCTGGTTTGCTGTAGACGC---TGTC i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21654647 202 + 198332218 TGGGGTGTTTCTGGGAGTAGAACAGCAAGCCTTCTTTGGTGGGATTCTTGCTGGGCTGGTCACTAAAATGCAAGT-GTAGTCCACATTGAAATGAGTA-AAACTATTGACCTAT----GGCTCAGAAGCTAAGAGACCAAGG--------ATGACATAAACATGAACACT-AGCCGTTCCAAGGGACAATGCCATCTGGTTTGCTGTAGACGC---TGTC i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20265592 202 - 85365473 TGGGGTGTTTCTGGGAGTAGAACAGCAAGCCTTCTTTGGTGGGATTCTTGCTGGACTGGTCACTAAAATGCGAGT-GTAGTCCATGTTGAAATGAATA-AAACTATTGACCTAC----GGCTCAGAAGCTAAAAGACCAAGG--------ATGACAT-AACATGAACACTAAGCTGTTCCAAGGGACAATGCCATCTGGTTTGCTGTAGACGC---TGTC i nomLeu3.chr20 C 0 I 1521 s rheMac3.chr5 16733158 202 + 184069350 TGGGGTGTTTCTGGGAGTAGAACGGCACGCCTTCTTTGGTGGGATTCTTGCTGGGCTGGTCACTAAAATACAAGT-GTAGTCCACATTGAAATGAGTA-AAACTATTGACCTAT----GGCTCAGAAGCTAGGAGACCAAGG--------ATGACATAAACATGAACACT-AGCCATTCCAAGGGACAATGCCATCCGGTATGCTGTAGACGC---TGTC i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20774302 202 + 189454096 TGGGGTGTTTCTGGGAGTAGAACGGCACGCCTTCTTTGGTGGGATTCTTGCTGGGCTGGTCACTAAAATACAAGT-GTAGTCCACATTGAAATGAGTA-AAACTATTGACCTAT----GGCTCAGAAGCTAGGAGACCAAGG--------ATGACATAAACATGAACACT-AGCCATTCCAAGGGACAATGCCATCCGGTATGCTGTAGACGC---TGTC i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16370257 202 + 178775436 TGGGGTGTTTCTGGGAGTAGAACGGCAAGCCTTCTTTGGTGGGATTCTTGCTGGGCTGGTCACTAAAATACAAGT-GTAGTCCACATTGAAATGAGTA-AAACTATTGACCTAT----GGCTCAGAAGCTAGGAGACCAAGG--------ATGACATAAACATGAACACT-AGCCATTCCAAGGGACAATGCCATCCGGTTTGCTGTAGACGC---TGTC i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19856813 202 - 48547382 TGGGGTGTTTCTGGGAGTAGAACGGCAAGCCTTCTTTGGTGGGATTCTTGCTGGGCTGGTCACTAAAATACAAGT-GTAGTCCACATTGAAATGAGTA-AAACTATTGACCTAT----GGCTCAGAAGCTAGAAGACCAAGG--------ATGACATAAACATGAACACT-AGCCATTCCAAGGGACAATGCCATCTGGTTTGCTGTAGACGC---TGTC i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21213173 201 - 190850796 TGGGGTGTTTCTGGGAGTAGAACAGCAAGC---CTTTGGTGGGATTCTTGTTGGGCTGGTCACTAAAACGCAAGT-GTAGTCCATGTTGAAATGAGGA-AAACTATTGATTTAT----GACTCAGAAGCTAAGAGACCAGGG--------ATGACATAAACATGGACACT-AGCTGTTCCAGGGGACAATGCCATCTGGTTTGCTGCAGACAC-TTTGTC i calJac3.chr3 C 0 C 0 s mm10.chr5 49201428 194 + 151834684 TAGGATGTATCTGGGGTTAGAATAGTAAGCTT------GTGGG--------TGGGCTGATAACTAGAAAGCAAGC-TGAATCATAATGGAAATGAGGG-GAAAAAATGCACTGCTGGGAGCTTAGAAGCCGAGAGACTAGGA--------CTGACATAAACATGATCACC-A-CCCCTCCAAAGGACAATGCCATCTGGTTCACAGCAGACACATTTATC i mm10.chr5 C 0 C 0 s canFam3.chr3 3793479 214 - 91889043 AGGAGTAATTCTGGGTACAGAATATTAGGCCTTCTTTGGTGGC-TTTTAGTGGGGTTGGTAACTGGAAAGCAAATAAAAGTGCTGATTAAAATGAGGACAAATCATCTGCCCAG----GGCTCAAAAGCTAAGAGACCAAGAGACCAGGCATGTCACAAACACAAACACC-AGCTCCTCCAGGGGACAGTGCCATCTGGTTTGCTGTGGACATACTTGTC i canFam3.chr3 I 176 C 0 a score=671174.000000 s hg38.chr4_KI270790v1_alt 91053 241 + 220246 AGAAATAGCAGACTCCTGAGATTCTCA-TTT----TCACTCTTG---------------GCAGATTGGAAAAGGCTAACAAACACTATGGCACAAAGGTAAATAAACTTTCCTTGGAGGCTATAG---GCTTCTCCTCAAAGTCAATGAG------GCA-----AG------------------------------------GCAAGTACATT-----------------------------------------TTTAAAGTGA------GTCCTTATTGAGGATCATTGGATGCTTCATTCTTGTGCCTTGCTCTGTCAT-----------AAAGCTTCTAGGGCGAGACCAATATGCCCAATCTCAA s panTro4.chr4 21479367 241 + 193495092 AGAAATAGCAGACTCCTGAGATTCTCA-TTT----TCACTCTTG---------------GCAGATTGGAAAAGGCTAACAAACACTATGGCGCAAAGGTAAATAAACTTTCCTTGGAGGCTATAG---GCTTCTCCTCAAAGTCAATGAG------GCA-----AG------------------------------------GCAAGTACATT-----------------------------------------TTTAAAGTGA------GTCCTTACTGAGGATCACTGGATGCTTCATTGTTGTGCCTTGCTCTGTCAT-----------AAAGCTTCTAGGGTGAGACCAATATGCCCAATCTCAA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21654849 241 + 198332218 AGAAATAGAAGACTCCTGAGATTCTCA-TTT----TCACTCTTG---------------GCAGATTGGAAAAGGCTAACAAACACTATGGCGCAAAGGTAAATAAACTTTCCTTGGAGGCTATAG---GCTCCTCCTCAAAGTCAATGAG------GCA-----AG------------------------------------GCAAGTACATT-----------------------------------------TTTAAAGTAA------GTCCTTATTGAGGATCATTGGATGCTTCATTCTTGTGCCTTGCTCTGTCAT-----------AAAGTTTCTAGGGTGGGACCAATATGCCCAATCTCAA i ponAbe2.chr4 C 0 C 0 s rheMac3.chr5 16733360 241 + 184069350 AGAAATAGCAGACTCCTGAGATCCTCA-TTT----TCACTCTTG---------------GCAGATTGGAAAAGGCTAACAAACACTATGGCTCAAAGGTACATAAACTTTCCTTGGAGGCTATAG---GCTCCTCCTCAAAGTCAATGAG------GCA-----AG------------------------------------GCAAGTACATT-----------------------------------------TTTAAAGTGA------GTCCTTATTGAAGATCATTGGATGCTTCATTCTTGTGCCTTGCTCTGTCAT-----------AAAGCTTCTAGGGTGAGACCAATATGCCCAATCTCAA i rheMac3.chr5 C 0 I 1 s macFas5.chr5 20774504 241 + 189454096 AGAAATAGCAGACTCCTGAGATCCTCA-TTT----TCACTCTTG---------------GCAGATTGGAAAAGGCTAACAAACACTATGGCTCAAAGGTACATAAACTTTCCTTGGAGGCTATAG---GCTCCTCCTCAAAGTCAATGAG------GCA-----AG------------------------------------GCAAGTACATT-----------------------------------------TTTAAAGTGA------GTCCTTACTGAAGATCATTGGATGCTTCATTCTTGTGCCTTGCTCTGTCAT-----------AAAGCTTCTAGGGTGAGACCAATATGCCCAATCTCAA i macFas5.chr5 C 0 I 1 s papAnu2.chr5 16370459 241 + 178775436 AGAAATAGCAGACTCCTGAGATCCTCA-TTT----TCACTCTTG---------------GCAGATTGGAAAAGGTTAACAAACACTATGGCTCAAAGGTACATAAACTTTCCTTGGAGGCTATAG---GCTCCTCCTCAAAGTCAATGAG------GCA-----AG------------------------------------Gcaagtacatt-----------------------------------------tttaaagtga------GTCCTTATTGAAGATCATTGGATGCTTCATTCTTGTGCCTTGCTCTGTCAT-----------AAAGCTTCTAGGGTGAGACCAATATGCCCAATCTcaa i papAnu2.chr5 C 0 I 1 s chlSab2.chr27 19857015 241 - 48547382 AGAAATAGCAGACTCCTGAGATCCTCA-TTT----TCACTCTTG---------------GCAGATTGGAAAAGGCTAACAAACACTATGGCTCAAAGGTACATAAACTTTCCTTGGAGGCTATAG---GCTCCTCCTCAAAGTCAATGAG------GCA-----AG------------------------------------GCAAGTACATT-----------------------------------------TTTAAAGTGA------GTCCTTATTGAAGATCATTGGATGCTTCATTCTTGTGCTTTGCTCTGTCAT-----------AAAGCTTCTAGGGTGAGACCAATATGCCCAATCTCAA i chlSab2.chr27 C 0 I 1 s calJac3.chr3 21213374 234 - 190850796 AGAAATAGCAGACTCCTGAGATTCTCATTTT----TCACTC-----------------------TTATAAAAGGCTAACAAACATTATGGCTTGAAGGTAAATAAACTTTCCTTGGAGGCCATAG---GCTCCTCTTCAAAGTCAATGAG------GCA-----TG------------------------------------GCAAGTACTTT-----------------------------------------TTTAAAGTGA------GTCCTTATTGAGAACCATTGGATGCTTCATTCTTGCACCCTGTTCTGTCAC-----------AAAGCTTCTAGGGTGAGACCAATATGCTCAATCTCAA i calJac3.chr3 C 0 I 1 s mm10.chr5 49201622 345 + 151834684 AGAAATAACAGACCCATGGGTTCCTCA-TTT----GCTCTCTTG-CTGTGTGTTGAGGAGCATATTGGAGCAGTTTATCAA----TATGGCTCAGAGGTAAGACCGACTTCTTTGGAAGCTCGAGACTGTTCCCTCTCAAA-TAAAGGAG------GCA-----AGTGAACATTTTTCATTTTTCTGAATTGACATAAAAAAGTATGCATATTTCCAAGTTATCAAATGGTGTTATGATTCAGGCATACCTTAATTTAAAAAAAAAAGACATCCTTATTGGTGATCTATAGATAATTCACTGTTATATTATGCCCTTTCATAGGCCAGGGCAAAACCTTTCAGGGAGTAATAAGTAAG--AAAGCTCAA i mm10.chr5 C 0 I 1 s canFam3.chr3 3793693 277 - 91889043 AGAAGCAGCAGACTCCTAAGGTCCTCA-TTCACTGTTATTCTGGGCTGTGTTTAAAGTGGCATATTGAGAACGGCCAGCAG----TATGGCTCAGGAGTGAGGAGGATTTTCTTGGAGGCGACAG---GCTCTTCCCCAGAGTAAATGAGCAAAATGCAGTAAGAG------------------------------------GCAAGTGATTT-----------------------------------------TTTTAAATGA------GTCCTTATGGAGTATCTTTGAATGATTCAGTCCCATGCTCTGCTCTACCTCAGGTCAAAGCCAAAGCTTCCAGACTATGATTAATATGCTGAGTTATA- i canFam3.chr3 C 0 C 0 e nomLeu3.chr20 20265794 1521 - 85365473 I a score=52390.000000 s hg38.chr4_KI270790v1_alt 91294 12 + 220246 ACATTCTATTTT s panTro4.chr4 21479608 12 + 193495092 ACATTCTATTTT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21655090 12 + 198332218 ACATTCTATTTT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20267315 12 - 85365473 ACATTCTATTTT i nomLeu3.chr20 I 1521 C 0 s rheMac3.chr5 16733602 12 + 184069350 ACATTCTATTTT i rheMac3.chr5 I 1 C 0 s macFas5.chr5 20774746 12 + 189454096 ACATTCTATTTT i macFas5.chr5 I 1 C 0 s papAnu2.chr5 16370701 12 + 178775436 acattctatttt i papAnu2.chr5 I 1 C 0 s chlSab2.chr27 19857257 12 - 48547382 ACATTCTATTTT i chlSab2.chr27 I 1 C 0 s calJac3.chr3 21213609 12 - 190850796 ACATTCTATTTT i calJac3.chr3 I 1 C 0 s mm10.chr5 49201968 12 + 151834684 ACATTCCATTTT i mm10.chr5 I 1 C 0 s canFam3.chr3 3793970 6 - 91889043 ------TATTTT i canFam3.chr3 C 0 C 0 a score=43062.000000 s hg38.chr4_KI270790v1_alt 91306 18 + 220246 TAATATTCC-------TTTTTACAA s panTro4.chr4 21479620 18 + 193495092 TAATATTCC-------TTTTTACAA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21655102 18 + 198332218 TAATAATCC-------TTTTTACGA i ponAbe2.chr4 C 0 I 22 s nomLeu3.chr20 20267327 18 - 85365473 TAATAtttc-------tttttacat i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16733614 18 + 184069350 TAATATTTC-------TTTATACAA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20774758 18 + 189454096 TAATATTTC-------TTTATACAA i macFas5.chr5 C 0 I 7924 s papAnu2.chr5 16370713 18 + 178775436 taatattcc-------tttatacaa i papAnu2.chr5 C 0 I 20 s chlSab2.chr27 19857269 18 - 48547382 TAATATTCC-------TTTTTACAA i chlSab2.chr27 C 0 I 20 s mm10.chr5 49201980 25 + 151834684 TAATATTCTCTTTTTATTTTTTCAA i mm10.chr5 C 0 C 0 s canFam3.chr3 3793976 14 - 91889043 -TATAt----------tttttaaaa i canFam3.chr3 C 0 C 0 e calJac3.chr3 21213621 0 - 190850796 C a score=24417.000000 s hg38.chr4_KI270790v1_alt 91324 10 + 220246 --tttttttttt s panTro4.chr4 21479638 10 + 193495092 --tttttttttt i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21655142 10 + 198332218 --tttttttttt i ponAbe2.chr4 I 22 C 0 s nomLeu3.chr20 20267345 10 - 85365473 --tttttttttt i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16733632 10 + 184069350 --CCtttttttt i rheMac3.chr5 C 0 I 267 s macFas5.chr5 20782700 10 + 189454096 --tttttttttt i macFas5.chr5 I 7924 C 0 s papAnu2.chr5 16370751 10 + 178775436 --tttttttttt i papAnu2.chr5 I 20 C 0 s chlSab2.chr27 19857307 10 - 48547382 --tttttttttt i chlSab2.chr27 I 20 C 0 s mm10.chr5 49202005 9 + 151834684 ---ttttttatt i mm10.chr5 C 0 I 1 s canFam3.chr3 3793990 10 - 91889043 gattttattt-- i canFam3.chr3 C 0 I 709 e calJac3.chr3 21213621 0 - 190850796 C a score=8350.000000 s hg38.chr4_KI270790v1_alt 91334 5 + 220246 gagac s panTro4.chr4 21479648 5 + 193495092 gagat i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21655152 5 + 198332218 gagat i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20267355 5 - 85365473 tagat i nomLeu3.chr20 C 0 C 0 s macFas5.chr5 20782710 5 + 189454096 gagac i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16370761 5 + 178775436 gagac i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19857317 5 - 48547382 gagac i chlSab2.chr27 C 0 C 0 s mm10.chr5 49202015 5 + 151834684 gatat i mm10.chr5 I 1 I 259 e rheMac3.chr5 16733642 267 + 184069350 I e calJac3.chr3 21213621 0 - 190850796 C e canFam3.chr3 3794000 709 - 91889043 I a score=402437.000000 s hg38.chr4_KI270790v1_alt 91339 224 + 220246 ggagtctcactctgtcgcccaggctggagtgcagtggcgtgatctcggctcattgcaacctttgtctcccaggttcaagcgattctcctgcctcagcctccagagtagctggtactacaggtgcccgccaccacacccagctaatttttgtatttttagtagagatggggtttcaccatgttggccaggctggtctcgaattcctgacctcaggtgatcgccta s panTro4.chr4 21479653 224 + 193495092 ggagtctcactctgtcgcccaggctggagtgcagtggcgtgatctcggctcattgcaacctttgtctcccaggttcaagcgattctcctgcctcagcctccagagtagctggtactacaggtgcccgccaccacacccagctaatttttgtatttttagtagagatggggtttcaccatgttggccaggctggtctcgaactcctgacctcaggtgatcaccta i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21655157 224 + 198332218 ggagtctcactctgtcgcccaggctggagtgcagtggcatgatctcggctcattgcaacctttgtctcccaggttcaagcgattctcctgcctcagcctccagagtagctggtactacaggtgcccgccaccacactcagctaatttttgtatttttagtagagatggggtttcaccatgttggccaggctggtctcgaactcctgacctcaggtgatcccctg i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20267360 222 - 85365473 ggagtctcagtctgtcacccaggctggagtgcagtggcgtgatctcggctcattgcaacctttgtctcccaggttcaagtgattctcctgcctcagcctccagagtagctggtactacaggtgcc--cccccacgcccggctaatttttgtatttttagtagagacggggtttcaccatgttggccaggctggcatcgaactcctgacctcaggtgatcgccct i nomLeu3.chr20 C 0 C 0 s macFas5.chr5 20782715 224 + 189454096 ggagtcttgctctgtcacccaggctggaatgaagtggtgtgatctcggctcactgcaacctttgcctcccaggttcaagcgattctcctgcctcagccttcagagtagctggtactacaagtgcctgccaccacatccggctaatttttgtatttttaatagagatggggtttcaccatgttggccaggctggtctcgaactcctaacctcaggtggtcacccg i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16370766 224 + 178775436 ggagtcttgctctgtcacccaggctggagtgaagtggtgtgatctcggcttactgcaacctttgcctcccaggttcaagcgattctcctgcctcagccttcagagtagctggtactacaagtgcctgccaccacatccggctaatttttgtatttttaatagagatggggtttcaccatgttggccaggctggtctcaaactcctaacctcaggtggtcacccg i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19857322 224 - 48547382 ggagtctcgctctgtcacccaggctggagtgcagtggtgtgatctcggctcactgcaacatttgcctcccaggttcaagtgattctcctgcctcagcctccagagtagctggtactacaggtgcctgccaccacacctggctaatttttgtatgtttaatagagatggggtttcaccatgttggccagactggtctcaaactcctaacctcaggtggtcacccg i chlSab2.chr27 C 0 C 0 e mm10.chr5 49202020 259 + 151834684 I e rheMac3.chr5 16733642 267 + 184069350 I e calJac3.chr3 21213621 0 - 190850796 C e canFam3.chr3 3794000 709 - 91889043 I a score=120443.000000 s hg38.chr4_KI270790v1_alt 91563 52 + 220246 cctcggcctcccaaagtgctgggattacaggcgtgatccactgtgcctggcG s panTro4.chr4 21479877 52 + 193495092 cctcggcctcccaaagtgctgggattacaggcgtgatccactgtgcctggcG i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21655381 52 + 198332218 cctcggcttcccaaagtgctgggattacaggcttgatccaccgcgcctggcc i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20267582 52 - 85365473 cctcagcctcccaaagtgctgggattataggcgtgagccaccatgcctaacc i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16733909 52 + 184069350 cctcggcctcccaaagtgctgggattacaggcatgagccaccatgcctggcc i rheMac3.chr5 I 267 C 0 s macFas5.chr5 20782939 52 + 189454096 cctcggcctcccaaagtgctgggattacaggcatgagccaccatgcctggcc i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16370990 52 + 178775436 cctccgcctcccaaagtgctgggattacaggcgtgagccaccatgcctggcc i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19857546 52 - 48547382 cctcggcctcccaaagtgctgggattacaggcgtgagccaccgtgactggcc i chlSab2.chr27 C 0 C 0 e mm10.chr5 49202020 259 + 151834684 I e calJac3.chr3 21213621 0 - 190850796 C e canFam3.chr3 3794000 709 - 91889043 I a score=10152.000000 s hg38.chr4_KI270790v1_alt 91615 3 + 220246 TAC s panTro4.chr4 21479929 3 + 193495092 TAC i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21655433 3 + 198332218 TAC i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20267634 3 - 85365473 TAC i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16733961 3 + 184069350 TAC i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20782991 3 + 189454096 TAC i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16371042 3 + 178775436 tac i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19857598 3 - 48547382 TAC i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21213621 3 - 190850796 TAC i calJac3.chr3 C 0 C 0 e mm10.chr5 49202020 259 + 151834684 I e canFam3.chr3 3794000 709 - 91889043 I a score=155698.000000 s hg38.chr4_KI270790v1_alt 91618 49 + 220246 AATGGTTATTTTATTGACTAAAACT--AAATTAGTTTTCACATGTAAACAA s panTro4.chr4 21479932 49 + 193495092 AATGGTTATTTTATTGACTAAAACT--AAATTAGTTTTCACATGTAAACAA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21655436 49 + 198332218 AATGGCTATTTTATTGACTAAAACT--AAATTAGTTTTCACATGCAAACAA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20267637 49 - 85365473 AATGGTTATTTTATTGACTAAAACT--AAATTAGTTTTCACATGTAAACAA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16733964 49 + 184069350 AATGGTTATTTTATTGGCTAAAACT--AAATTGGTTTTCACATGTAAACAA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20782994 49 + 189454096 AATGGTTATTTTATTGGCTAAAACT--AAATTGGTTTTCACATGTAAACAA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16371045 49 + 178775436 aatgGTTATTTTATTGGCTAAAACT--AAATTGGTTTTCACATGTAAACAA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19857601 49 - 48547382 AATGATTATTTTATTGACTAAAACT--AAATTGGTTTCCACATGCAAACAA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21213624 49 - 190850796 AACGGCTATTTTATTGATTAAAAGT--AAATTAGTTTTTACATATAAACAA i calJac3.chr3 C 0 I 318 s mm10.chr5 49202279 51 + 151834684 AAATGTTGCTTTGATGAGTAAAATTCAAAGTTAGCTTTGACTTGGGTGCTG i mm10.chr5 I 259 C 0 e canFam3.chr3 3794000 709 - 91889043 I a score=89051.000000 s hg38.chr4_KI270790v1_alt 91667 29 + 220246 AGATAGTTAACCATTCCCTGACCACCATC s panTro4.chr4 21479981 29 + 193495092 AGATAGTTAACCATTCCCCGACCACCATC i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21655485 29 + 198332218 AGATAGTTAACCATTCCCTGACCACCATC i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20267686 29 - 85365473 AGATAGTTAACCATTCCCTGACCGCCATC i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16734013 29 + 184069350 AGATAGTTAACCATTCCCTGACCACCATC i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20783043 29 + 189454096 AGATAGTTAACCATTCCCTGACCACCATC i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16371094 29 + 178775436 AGATAGTTAACCATTCCCTGACCACCATC i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19857650 29 - 48547382 AGATAGTTAACCATTCCCTGACCACCATC i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21213991 29 - 190850796 TTATAGTTAACCATTACCAGATCACCACC i calJac3.chr3 I 318 C 0 s mm10.chr5 49202330 27 + 151834684 --TGAGTTTTCCACTATCTGTGTGACATA i mm10.chr5 C 0 C 0 e canFam3.chr3 3794000 709 - 91889043 I a score=657827.000000 s hg38.chr4_KI270790v1_alt 91696 202 + 220246 AAAA-AAATGGGGTGGGAGGAGGAGTT----AGTGGCTCTGAG-TAGACGCAAGTTGAGGGAGTCTTCTTCCAGACAG----AAAAAAACCA-TCCTCTGTTGTCTTAGAAATGGTGGCCAATAGGTTTCCTTCCTTCTGTTGTTTTCTCTTTGGACAGG-AAAAATATGTAGAAAGAATGAGAAATGCCCTAAGCATTAAATTCAGTACCCTG s panTro4.chr4 21480010 202 + 193495092 AAAA-AAATGGGGTGGGAGGAGGTGTT----AGTGGCTCTGAG-TAGATGCAAGTTGAGGGAGTCTTCTTCCAGACAG----AAAAAAACCA-TCCTCTGTTGTCTTAGAAATGGTGGCCAATAGGTTTCCTTCCTTCTGTTGTTTTCTCTTTGGACAGG-AAAAATATGTAGAAAGAATGAGAAATGCCCTAAGCATTAAATTCAGTACCCTG i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21655514 202 + 198332218 AAAA-AAATGGGGTGGGAGGAGGAGTT----AGTGGCTCTGAG-TAGATGGAAGTTGAGGGAGTCTTCTCCCAGACAG----AAAAAAACCA-TCCTCTGTTGTCTTAGAAATGGTGGCCGATAGGTTTCCTTCCTTCTGTTGTTTTCTCTTTGGACAAG-AAAAATATGTAGAAAGAATGAGAAATGCCTTAAGCATTAAATTCAGTACCCTG i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20267715 205 - 85365473 AAAA-AAATGGGATGGGAGGAGGAGTT----AGTGGCTCTGAG-TAGATGGAAGTTGAGGGAGTCTTCTCCCAGACAG-AAAAAAAAAAACA-TCCTCTGTTGTCTTAGAAATGGTGGCCAATAGGTTTCCTTCCTTCTGTTATTTTCTGTTTGGACAGG-AAAAATATGTAGGAAGAATGAGAAATGCCTTAAGCATTAAATTCAGTACCCTG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16734042 206 + 184069350 TAAA-AAATGGGGTGGGAGGAGGAGTT----AGTCACTCTGAGTTCGATGGAAGTTGAGGGAGTCTTCTCCCCGACAG--AAAAAAAAACCA-TCCTCTGTTGTCTTAGAAATGGTGGCTGATAGGTTTCCTTCCTTCTGTTGTTTTCTCTTGGGACAGGAAAAAATATGTAGAAAGAATGAGAAATGCCTTAAGCCTTAAATTCAGTACTCTG i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20783072 208 + 189454096 TAAA-AAATGGAGTGGGAGGAGGAGTT----AGTCACTCTGAGTTCGATGGAAGTTGAGGGAGTCTTCTCCCCGACAGAAAAAAAAAAACCA-TCCTCTGTTGTCTTAGAAATGGTGGCTGATAGGTTTCCTTCCTTCTGGTGTTTTCTCTTGGGACAGGAAAAAATATGTAGAAAGAATGAGAAATGCCTTAAGCATTAAATTCAGTACTCTG i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16371123 207 + 178775436 TAAA-AAATGGGGCGGGAGGAGGAGTT----AGTCACTCTGAGTTCGATGGAAGTTGAGGGAGTCTTCTCCccgacag-aaaaaaaaaacca-tcctcTGTTGTCTTAGAAATGGTGGCTGATaggtttccttccttctgttgttttctcttgggacaggaaaaaatatgtagaaagaaTGAGAAATGCCTTAAGCATTAAATTCAGTACTCTG i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19857679 205 - 48547382 AAAA-AAATGGGGTGGGAGGAGGAGTT----AGTGACTCTGAGTTCGATGGAAGTTGAGAGAGTCTTCTCCCAGACAG--AAAAAAAAACCA-TCCTCTGTTGTCTTAGAAATGGTGGCTGATAGGTTTCCTTCCTTCTGTTGTTTTCTCTTTGGACAGG-AAAAATATGTAGAAAGAATGAGAAATGTCTGAAGCATTAAATTCAGTACTCTG i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21214020 202 - 190850796 AAAACAAATGGGGTGGGAGGAGGAGCT----AGTGGCTCTGAG-TTGATGGAAGTTGAGGGACTCTTCTCCCAGAGAG-----AGAAAATCA-TTCTCTGTTGTTTTAGAAATGGTGGCCGATAGGTTTCCTTCCTTTCGTTGTTTTCTCCTTGGGCAGG-AAAAATGTGTAGAAATAATGAGAAATGCCTTAAGCATTAAAATAAGTACCCTG i calJac3.chr3 C 0 C 0 s mm10.chr5 49202357 155 + 151834684 AAAG-AC----------AAGAAAAGAT----AAAGAC-------AGCACACATGT--------TCTTATACCA---------AAAGAAGCCACTCCTGTTTTGTCCTAAAAA-GATGGCCAATGAGTTTCCTTCTTCAGGCTACTTTTTCCTAAAGAAGG-AACAA--TGTAGAAAGGATAAG---TGTCTTGCATAT-------------CTG i mm10.chr5 C 0 C 0 s canFam3.chr3 3794709 202 - 91889043 aAAG-AAAAGATATGAAAGGAGGGGATCGAAGGCAGCAATGAG-TGGCTGGAAGTTGACTGAGTCTCCTCCAAGCCAG-----AAGAAGCCACTGCTCTGCTGTCTTAGAAATGCTGCCCAATAAATATCTTTCCTTC---TCTCTTCTCTGGGGGCAGG--AAAATATGAAGAAAAGATAAGAAATCTCTTAATCATTAAAATCAGTACTTTG i canFam3.chr3 I 709 I 446 a score=56149.000000 s hg38.chr4_KI270790v1_alt 91898 19 + 220246 AACAATCTTACTGGGGAGT s panTro4.chr4 21480212 19 + 193495092 AACAATCTTACTGGGGAGT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21655716 19 + 198332218 AAAAATCTTACTGGGGAGT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20267920 19 - 85365473 AACAATCTTACTGGGGAGT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16734248 19 + 184069350 AACAATCTTACTGGGGAGT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20783280 19 + 189454096 AACAATCTTACTGGGGAGT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16371330 19 + 178775436 AACAATCTTACTGGGGAGT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19857884 19 - 48547382 AACAATCTTACTGGGGAGT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21214222 19 - 190850796 AACAATATTACTGGGGAGT i calJac3.chr3 C 0 C 0 s mm10.chr5 49202512 5 + 151834684 CACAA-------------- i mm10.chr5 C 0 C 0 e canFam3.chr3 3794911 446 - 91889043 I a score=1458222.000000 s hg38.chr4_KI270790v1_alt 91917 470 + 220246 TGAACCCATGCCTGGATAGCCAGAGAAAGAATTATATTATTTGGAGGGGAGCTTGGGGTGGTGGCCATCCAGATATGGGAACTCAGAGAAAGGATATTTCT-GGCAATGGCAGCTTCATAATTTCTAAATA---GTGAT--AATTTGATCAGAGAGTGAAGGTGGTGGTGGCTGGTAGGATAATAACATTGAGACTCGATATGTATGGCAAACAGGATCC---TTTTTAACATATCACTGAGGATGGATGGAGAGGAAGAGAGTTATCTTTCTGAGAATCCCTGATATGATCTGGGAACAGTAGTCAGCAGAGT-----------Cattacttttctattgctgctgtaccgaattaccacaaacttagtggcttccaaaattgcgaatgtattaccttttagctctagaggtcagaagtctgatgtgggtctcagtggactgaaatcaaggtgtcagcagggctgtgttgctttcccagtgctctaggg s panTro4.chr4 21480231 470 + 193495092 TGAACCCATGCCTGGATAGCCAGAGAAAGAATTATATTATTTGGAGGGGAGCTTGGGGTGGTGGCCATCCAGATATGGGAACTCAGAGAAAGGATATTTCT-GGCAATGGCAGCTTCATAATTTCTAAATA---GTGAT--AATTTGATCAGAGAGTGAAGGTGGTGGTGGCTGGTAGGACAATAACATTGAGACTCGATATGTGTGGCAAACAGGATCC---TTTTTAACATATCATTGAGGATGGATGGAGAGGAAGAGAGTTATCTTTCTGAGAATCCCTGATATTATCTGGGAACAGTAGTCAGCAGAGT-----------Cattagttttctattgctgctgtaccgaattaccacaaacttagtggtttccaaaattgcaaatgtattaccttctagctctagaggtcagaagtctgatgtgggtctcactggactgaaatcaaggtgtcagcagggctgtgttgctttcccagtgctctaagg i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21655735 469 + 198332218 TGAACCCATGCCTGGATAGCCAGAGAGAAAATTATATTATTTGGAGGGGAGCTTGGGGTGGTGGCCATCCAGATATGGGAACTCAGAGAAAGGATATTTCT-TGCAACGGCAGCTTCATAATTTCTAAATA---GTGAT--AATTTGATCAGATAGTGAAGGTGGTGGTGGCTGGTAGGACAGTAACATTGAGACTCGATATGTATGGCAAACAGGATCC----TTTTAGCATATCATTGAGGATGGATGGAGAGGAAGACAGTTATCTTTCTGAGAATCCCTGATATGATCTGGGAACAGCAGTCAGCAGAGT-----------Cattagttttctattgctgctgtaccgaattaccccaaacttagtggcttccaaaattgcaaatgtattaccttctagctctagaggtcagaagtctgatgtgggtctcactggactgaaatcaaggtgtcagcagggctgtgttgctttcccaatgctctaggg i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20267939 467 - 85365473 TGAACCCATGCCGGGATAGCCAGAGAGAGAATTATATTATTTGCAGGGCAGCTTGGGGTGGTGGCCATCCAGATATGGGAACTCAGAGAAAGGGTATTTCT-GGCAACGGCAGCTTCATAATTTCTAAATA---GTGAT--AATTTGATCAGAGAGTGAAGGTGGTGGCAGCTGGTAGGACAATAACATCGAGACTCAATATGTGTGGCAAACAGGATCC----TTTTAACATATCATTGAGGATGGATGGAGAGGAAG--AGTTATCTTTCTGAGAATCCCTGATATGATCTGAGAACAGGAGTCAGCAGAGT-----------Cattagttttctattgctgctgtaccaaattaccacaaacttagtggcttccaaaattgcaaatatattaccttctagttctagaggtcagaaatctgatgggggtctcactggactgaaatcaaggtgtcagcagggctgtgttgctttcccaatgctctaagg i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16734267 454 + 184069350 TGAACCCACGCCTAGATAGCCAGAGAGAGAATTACATTATTTGGAGGGCAGCTTGGGGTGGTGGCCATCCAGATATGGAAACTCAGAGAAAGGATATTTCT-GGCAATGGCAGCTTCATAATTTCTAAATA---GTCAT--AATTTGATCAGAGAGTGAATGTGGTGGTGGC-GATAGGAAAATAACATTGAGACTCGATATGTGTGGCAAACAGGATCC----TTTTAACATATCATTGAGGATGGATGGAGAGGAAGACAGTTATCTTTCTGAGAATCC--------------GAACAGTAGTCAGCAGAGT-----------Cattagttttctattgctgctgtaccaaattaccacaaacttggtggcttccaaagttgcaaatgtattaccttctagctctagaggtcagaagtctgatgtgggtctcactggactgaaatcaaggtgtcagcagggctgtgttgctttcccaatgctctaggg i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20783299 454 + 189454096 TGAACCCACGCCTAGATAGCCAGAGAGAGAATTACATTATTTGGAGGGAAGCTTGGGGTGGTGGCCATCCAGATATGGAAACTCAGAGAAAGGATATTTCT-GGCAATGGCAGCTTCATAATTTCTAAATA---GTCAT--AATTTGATCAGAGAGTGAAGGTGGTGGTGGC-GATAGGAAAATAACATTGAGACTCGATATGTGTGGCAAACAGGATCC----TTTTAACATATCATTGAGGATGGATGGAGAGGAAGACAGTTATCTTTCTGAGAATCC--------------GAACAGTAGTCAGCAGAGT-----------Cattagttttctattgctgctgtaccaaattaccacaaacttggtggcttccaaaattgcaaatgtattaccttctagctctagaggtcagaagtctgatgtgggtctcactggactgaaatcaaggtgtcagcagggctgtggtgctttcccaatgctctaggg i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16371349 454 + 178775436 TGAACCCACGCCTAGATAGCCAGAGAGAGAATTACATTATTTGGAGGGCAGCTTGGGGTGGTGGCCATCCAGATATGGAAACTCAGAGAAAGGATATTTCT-GGCAATGGCAGCTTCATAATTTCTAAATA---GTCAT--AATTTGATCAGAGAGTGAAGGTGGTGGTGGC-GATAGGAAAATAACATTGAGACTCGATATGTGTGGCAAACAGGATCC----TTTTAACATATCATTGAGGATGGATGGAGAGGAAGACAGTTATCTTTCTGAGAATCC--------------GAACAGTAGTCAGCATAGT-----------CGTTAGTTTTCTATCGCTTCTGtaccaaattaccacaaacttagtggcttccAAAATTGCAAATGTATTACCTTCTAgctctagaggtcagaagtctgatgtgggtctcactggactaaaatcaaggtgtcagcaggcctGTGTTGCTTTCCCAATGCTCTAGGG i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19857903 449 - 48547382 TGAAC-----CCTGGATAGCCAGAGAGAGAATTACATTATTTGGAGGGCAGCTTGGGGTGGTGGCCATCCAGATATGGAAACTCAGAGAAAGGATATTTCT-GGCAATGGCAGCTTCATAATTTCTAAATA---GTCAT--AATTTGATCAGAGAGTGAAGGTGGTGGTGGC-AATAGGAAAATAACATTGAGACTCGATGTGTGTGGCAAACAGGATCC----TTTTAACATATCATTGAGGATGGATGGAGAGGAAGACAGTTATCTTTCTGAGAATCC--------------GAACAGTAGTCAGCAGAGT-----------Cattagttttctattgctgctgtaccaaattaccacaaacttagtggcttccaaaattgcagatgtattaccttctagctctagaggtcagaagtctgatgtaggtctcactggactgaaatcaaggtgtcagcaggcctgtgttgcttttccaatgctctaggg i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21214241 465 - 190850796 TGAAACCATGCCTGGATAGGCAGAG--AGAACTATATTATTTGGAGGGAAGCTTGGGGCGGTGGCCATCCAGATATGAGAGCTCAGAGAAAGGATATTTCT-GGTGATGGCAGCTTCATAATTTCTAAATA---GTGAT--AATTGGATCAGAATGTGAAGGT----------GGTAGGACAATAACGTTGAGACTCAATATGTGT-GCAAACGGGATTC----TTTTAATGTATCATTGAGGATGGATAGAGAGGAAG--AGTTATCATTCTGCAAATCCCTGATATGACCTGGGAACAGTAGTCAGCAGAGTTATTACAGAGCCattaatattctattactgctgcaccaaatttccacaaaggtagtggcttccaaaatcacaaatgtattaccttctagctcttgaggtcagaagtctgatgtgggtctcactggactgaaatcaaggtgtcaacaaggctgtgttgctttcccgatactataggg i calJac3.chr3 C 0 C 0 s mm10.chr5 49202517 403 + 151834684 -------ATGCTT---------TAGAGAAGATGAT------------GCAGGTTTTGATAGCAGTACCCTTTACAC-------------AAGCATATTCAT-GCTCACGGGTGGTGCTACGTTTTCATATACATTTCATGAAATTTACTTGAGGAGGACAAGTGTTTGTAGTGGGTAAGACATCAATCCTCAGAATCAGCAT-----AAACACAGAACCTAAGTATTGACTGTGGCATTAAGGATAGGTG--AGTGATGAGATTCTCCTTTCTGATAATT---------------GTATAACTATAGGAAg--------------cattaattt--tatttcttttatgtcaaattatgactatcttaatgtcttccgattatgcaagtac----tctcacagattttcaggttcaaagtctgctattatgctctctagtttaaaggggacatgtcagcaagactg---ttcctccctaaggttctaggg i mm10.chr5 C 0 C 0 s canFam3.chr3 3795357 391 - 91889043 TAAAACCATGTATGAATAGCCAGAGAA----------TATTTGGGTGGTGGATTACAGT-GCAGTCTTGCAGATGTGGGAACTCAGAAGAAGGATATCCCTAGATTATAACAGCTTCAGAATTTCTAGATC---GTGAT--ACTCCAACGAGGGACTGT--------------AGTAAAATATTAATCTCGAGACTCCAGAAAAGGGATAAACA-----C-----------------TTGAGGACGAGTGAGGATAAAGGAAGTTTTCTTTTGGAG-------------------AAACTCTAGTTGGCAG--------------TCTTACTGT--tattgctgctgttccaaattatcacaaacttagtgcctttgcgcaacaccaatttgttatcatacagttgtataggtcagaagtctaatgtgagtctcgctgg----------agctgttggcaggcctgcgtttccctctgaag--tctgggg i canFam3.chr3 I 446 C 0 a score=3373.000000 s hg38.chr4_KI270790v1_alt 92387 2 + 220246 ag s panTro4.chr4 21480701 2 + 193495092 ag i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21656204 2 + 198332218 ag i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20268406 2 - 85365473 ga i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16734721 2 + 184069350 aa i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20783753 2 + 189454096 aa i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16371803 2 + 178775436 AA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19858352 2 - 48547382 aa i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21214706 2 - 190850796 ga i calJac3.chr3 C 0 C 0 s canFam3.chr3 3795748 2 - 91889043 ag i canFam3.chr3 C 0 C 0 e mm10.chr5 49202920 0 + 151834684 C a score=196156.000000 s hg38.chr4_KI270790v1_alt 92389 119 + 220246 gagttagtttctgtgctgttttgtttgtttgt---ttgtttg-ttgtttgttgtttgtttttgagacagagtcttgctctgttacccaggctggagtgcaatggcaccatttcggctc-actgc s panTro4.chr4 21480703 123 + 193495092 gagttagtttctgtgctgttttgtttgtttgtttgttgtttgtttgtttgttttttgtttttgagacagagtcttgctctgttacccaggctggagtgcaatggcaccatttcggctc-actgc i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21656206 116 + 198332218 gagttagtttctgtgcttttttgttttttttt---ttgt----ttttttgttttttgtttttgagacagagtctcgctctgttacccaggctggagtgcaatggcaccatttcagctc-actgc i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20268408 87 - 85365473 gagtcattttctgtgcttttt------------------------------------tttttgaaacggagtcttgctctgttgctcaggctggagtgcaatggcacgatcttggctc-actgc i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16734723 97 + 184069350 gagttagtttcTGTGGG---------------------------ttttttttttttttttttgagacagagtcttgctctgttgctcaggctggaatgcaatggcacaatctcggctcaacttc i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20783755 105 + 189454096 gagctagtttctgtgggt--------tttttt-----------tttttttttttttttttttgagatggagtcttgctctgttgctcaggctggaatgcaatggcacaatctcggctcaacttc i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16371805 94 + 178775436 GAGTtagtttctgtg------------------------------tttttttttttttttttgagacagagtcttgctctgttgctcaggctggaatgcaatggcacaatctcgggtcaacttc i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19858354 111 - 48547382 gagttagtttctgtgtgtttt--ttgtttttt-----------gttttttttatttttttttgagacggagtcttgctctgttgctcagactggaatgcaatggcacaatctcggctcaacttc i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21214708 99 - 190850796 gagttagatt-tgtgcctttt----------------------ccagTAAtttttttttttccagacagagtcttgctctgtcacccaggctagagtgcaat-gcatgatctcaactc-actgc i calJac3.chr3 C 0 C 0 e mm10.chr5 49202920 0 + 151834684 C e canFam3.chr3 3795750 0 - 91889043 C a score=72176.000000 s hg38.chr4_KI270790v1_alt 92508 24 + 220246 aacctctgcctcccgggttcaatc s panTro4.chr4 21480826 24 + 193495092 aacctctgcctcccgggttcaatc i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21656322 24 + 198332218 aacctctgcctcccgggttcaatc i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20268495 24 - 85365473 aacttctgcctcccgggttcaatc i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16734820 24 + 184069350 aacctctgcctcctgggttcaatc i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20783860 24 + 189454096 aacctctgcctcctgggttcaatc i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16371899 24 + 178775436 aacctctgcctcctgggttcaatc i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19858465 24 - 48547382 aacctctgcctcctgggttcaatc i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21214807 24 - 190850796 aacctttacctcctggcttcaatt i calJac3.chr3 C 0 C 0 s canFam3.chr3 3795750 14 - 91889043 aatccctgtctttg---------- i canFam3.chr3 C 0 C 0 e mm10.chr5 49202920 0 + 151834684 C a score=294642.000000 s hg38.chr4_KI270790v1_alt 92532 158 + 220246 gattctcctgcctcagcctcccgagtagctgggataacaggagcgcatcactacatccag-----------------------------------------ctaatttttgtatttttagtagagatggggtttca-catgctggccaagctggtcacaaattcctgacgttagtt-------------tttac-tctgcctgcattctttggc s panTro4.chr4 21480850 159 + 193495092 aattctcctgcctcagcctcccgagtagctgggataacaggagcgcatcactacatccag-----------------------------------------ctaatttttgtatttttagtagagatggggtttcaccatgctggccaggctggtcacaaattcctgatgtcagtt-------------tttac-tctgcctgcattctttggc i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21656346 159 + 198332218 aattctcctgcctcagcctcccgagtagctgggataacagaagtgcatcactatgtccag-----------------------------------------ctaatttttgtatttttagcagagatagggtttcactatgttggccaggctggtcacaaattcctgacgtcagtt-------------tttat-gcagactgcattctttggc i ponAbe2.chr4 C 0 M 591 s nomLeu3.chr20 20268519 172 - 85365473 gattctcctgcctcagcctcccaagtagctgggaaaagaggcatgtgtcactacatccag-----------------------------------------ctaatttttgtatttttagtagagatggggtttcaccatgttggccaggctggtcacaaactcctgacctcagtttttaatgaggtcatttaa-tgaggtcacattctttgga i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16734844 161 + 184069350 gattctcctgcctcagcctcctgagtagct------------------------------nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttttgtatttttagtagagatggggtttcaccatgttggccaggctggtcacaaactcctgacct--GTT-------------TTTGA--------gcattctctggc i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20783884 150 + 189454096 gattctcctgcctcagcctcctgagtagctgggataacaggtgtgcatcactaaatccgg-----------------------------------------ctaatttttgtatttttagtagagatggggtttcaccatgttggccaggctggtcacaaactcctgacct--gtt-------------tttga--------gcattctctggc i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16371923 158 + 178775436 gattctcctgcctcagcttcctgagtagctgggataacaggtgtgcatcactaaatccgg-----------------------------------------ctaatttttgtatttttagtagagatggggtttcaccatgttggccaggctggtcacaaactcctgacct--gtt-------------TTTGATGCTGCCTGCATTCTCTGGC i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19858489 158 - 48547382 gattctcctgcctcagcctcccgagtagctgggataacaggtgtgcatcactaaatccgg-----------------------------------------ctaatttttgtatttttagtagagatggggtttcaccatgttggccaggctggtcacaaactcctgacct--gtt-------------tttgatgccgcctgcattctctggc i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21214831 151 - 190850796 gattcccctgcctcagatgcctgagtagctgggatta-aggtgtgcatcactacactgag-----------------------------------------ctactttttg--------gtagatacagggtttcaccatgttggtcaggctggtcacaaactcctgacctcagTT-------------TTTAATgttgcctgcattctttggc i calJac3.chr3 C 0 C 0 s mm10.chr5 49202920 43 + 151834684 -------------------------------------------------------------------------------------------------------------------------------gaattttcac-----------------tccca--------------gct-------------ttcatggctgcttgcattatttggc i mm10.chr5 C 0 C 0 s canFam3.chr3 3795764 42 - 91889043 gattttccagctt----------------------------------------------------------------------------------------ctagtta-----------------------------------------------------------------gtt-------------------gtgggctgcaatctctggc i canFam3.chr3 C 0 C 0 a score=922407.000000 s hg38.chr4_KI270790v1_alt 92690 347 + 220246 ttgtgcatgccttccatgttgaa------agccatcaatggtgaattgag---ttctcaaatcgtattactccaa-tcttccctctgactcactcttcc-actccttaggacccttgtgattt----catgggttcctcacatataactcaggaaaatctgcctatct--taatgtcagctaattagcaacc-------tttttttttttttataatgtagcaaaatatattagtagggtccatgaattaagatgtggccaccttggggtgctttcattctgtctgtcacaacagctgtgaaaaacatggtgtctggagccatattgtctagattcaatcccaatgccaccacatactaactatgcaactc s panTro4.chr4 21481009 354 + 193495092 ttgtgcatgccttccatgttgaa------agccatcaatggtgaattgag---ttctcaaatcgtattactccaa-tcttccctctgactcattcttcc-actccttaggacccttgtgattt----catggattcctcatatataacccaggaaaatctgcctatct--taatgtcagctaattagcaaccttttttttttttttttttttacaatgtagcaaaatatattagtagggtccatgaattaagatgtggccaccttggggtgctttcattctgtctatcacaACGGCTgtgaaaaacatggtgtctggagccatattgtctaaattcaatcccaatgccaccacatactaactatgtaacTC i panTro4.chr4 C 0 I 72 s nomLeu3.chr20 20268691 345 - 85365473 ttgtgcatgacttccatgttgaa------agccatcagtggtgaattgag---ttctcatatcgtattactccaa-acttccctctgactcactcttcc-actccttaggacccttgcgattt----catgggttccccacatataacccgggaaaatctgcctgtct--taatgtcagctaattagcaacc---------ttattttttttgccatgtagcaaaatatattagtagggtccatgaattaagatgtggccatcttggggtgttttcattctgtctatcacaacagctgtgagaaacatggtgtctgaagccatattgtctagattcaatcccaatgccaccacatactaactatgcaactc i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16735005 345 + 184069350 ttgtgcatgccttccatgtcgaa------agccatcaatggtgaattgag---ttcttacatcatattactccaa-tcttccctctgactcactcctcc-gctccttaggacccttgtgattt----cgtgggttccccacatataacccaggaaaatctgcctatct--caatgtcaaa-aattaacaacc--------atatttttctttgccatgtagcaaaatatattagtagggtccatgaattaagatgtggccaccttggggtgctttcattctgtctatcacaacagctgtgagaaacatggtgtttggaaccatattgtctagattcaatcccaatgccaccacatactaactatgcaactg i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20784034 345 + 189454096 ttgtgcatgccttccatgtcaaa------agccatcaatggtgaattgag---ttctcacatcatattactccaa-tcttccctctgactcactcctcc-gctccttaggacccttgtgattt----cgtgggttccccacatataacccaggaaaatctgcctatct--caatgtcaaa-aattaacaacc--------atatttttctttgccatgtagcaaaatatattagtagggtccatgaattaagatgtggccaccttggggtgctttcattctgtctatcacaacagctgtgagaaacatggtgtttggaaccatattgtctagattcaatcccaatgccaccacatactaactatgcaactg i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16372081 345 + 178775436 TGGTGCATGCCTTCCATGTCGAA------AGCCATCAATGGTGAATTGAG---TTCTCACATCATATTACTCCAA-TCTTCCCTCTGACTCACTCCTCC-ACTCCTTAGGACCCTTGTGATTT----CGTGGGTTCCCCACATATAACCCAGGAAAATCTGCCTATCT--CAATGTCAAA-AATTAACaacc--------ttatttttctttgccATGTAGCAAAATATATTAGTAGGGTCCATGAATTAAGATGTGGCCACCTTGGGGTGCTTTCATTCTGTCTATCACAACAGCTGTGAGAAACATGGTGTTTGGAACCATATTGTCTAGATTCAATCCCAATGCCACCACATACTAACTATGCAACTG i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19858647 345 - 48547382 ttgtgcatgccttccatgttgaa------agccgttaattgtgaattgag---ttctcatatcgtattactccaa-tcttccctctgactcactcctcc-actccttaggacccttgtgattt----cgtgggttccccacatataacccaggaaaatctgcctatct--taatgtcaaa-aattaacaacc--------ttatttttctttgccatgtagcaaaatatattagtagggtccatgaattaagatgtggccaccttggggtgctttcattctgtctatcacaacagctgtgagaaacatgatgtctggaaccatattgtctagattcaatcccaatgccaccacatactaactatgcaactg i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21214982 349 - 190850796 ttgtgtatgccttccatgttgaa------agccatcaatggtgaattgac---ttttcatatcacattacaccaa-tcttccctctgactccctcttct-actccttagtccccttgtgattt----cacaggttccccacagataacccaggaatatttgcctatattataatatcagctaattaacaacc-------ttaatttttttttgccatgtaggataatatattaatagggtccatgaattaagatgtggacagcttggggtgcttttattctgtccattacaatagctgtgagaaacatggtctctggaggcatattgtctagaatcaattccaatgctaccacatattagctatgcaactg i calJac3.chr3 C 0 C 0 s mm10.chr5 49202963 308 + 151834684 ttgtagctctctccgattctcaagcacagagtgctcaaggatgacc-------tttgcctataacattactgc------cttctccaactcagccttac-atattttagaggctttagaattt----ga-------ctcacagataatgcaagaaaattt-----taa--taatttcagctaactaacagcc-----------atactttttgacacatagcataatgtattgactgggttcagaagttagggcgtg----------------TTGGTTCAAGGTACTACAGTTGCTgtgagaagcacggtctctggagcgata----ctggattgtatcccaatgacaaatcgtacgagctctgaaactc i mm10.chr5 C 0 C 0 s canFam3.chr3 3795806 336 - 91889043 ttgccaccgccacgcatctgcaa------agccagagatggtcgtttgagcccttcccgcatcacactgctccagcttttttcactacctcactcttccaacttcttaggacaattgtgattgattacatggagcctacacaggtaattc-------------tattt--taaagtcaatttattta-------------tttattttttttgccatgtaacataacatattcataggttccagggattaggatgtggacatctttgagtatctttattctatccaccacaGCAGCTAtgagatgcatgatgcctggagccatgttgtctagactcaatcccagtgccaccacataccggctgggcaact- i canFam3.chr3 C 0 C 0 e ponAbe2.chr4 21656505 591 + 198332218 M a score=253369.000000 s hg38.chr4_KI270790v1_alt 93037 111 + 220246 tggactaatga-cacagtctctccacgcctcagtttcctcaactgtaaaccaca-gtgaataacgcctatctcagaaggttcttctaaggaat-aatgtgttaatatatgaaat s nomLeu3.chr20 20269036 109 - 85365473 tgggctaatga-tacagtctctccatgcct--gtttcctcagttgcaaaccaca-gtgaataatgcctatctcagaaggttcttctagggaat-aacgtgttaattaatgaaat i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16735350 111 + 184069350 tgggctaatga-tacagtctctccatgcctcagtttcctcaattgtaaaccaca-gtgaataatgcctatctcagaaggttcttctaaggaat-aatgtgttaatttatgaaat i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20784379 111 + 189454096 tgggctaatga-tacagtctctccatgcctcagtttcctcaattgtaaaccaca-gtgaataatgcctatctcagaaggttcttctaaggaat-aatgtgttaatttatgaaat i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16372426 111 + 178775436 TGGGCTAATGA-TACAgtctctccatgcctcagtttcctcaattgtAAACCACA-GTGAATAATGCCTATCTCAGAAGGTTCTTCTAAGGAAT-AATGTGTTAATTTATGAAAT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19858992 111 - 48547382 tgggctaatga-tacagtttctccatgcctcagtttcctcaattgtaaaccaca-gtgaataatgcctatctcagaaggttcttctaaggaat-aatgtgttaatttatgaaat i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21215331 111 - 190850796 tgggctaatga-tatagtgtctgcatgcctcagtttcctcatttgtaaaccata-gtgaaaaatgcctatccctaaaggttcttctaaggaat-agtgtgctaatttatgaaac i calJac3.chr3 C 0 C 0 s mm10.chr5 49203271 110 + 151834684 --gattattgatttttatctccccatgcctcgggttcctcacttagaaaatatatttgtggagtgtctctatcataaagctcttatgaag-at-gaagtgaAATtgtgggaaat i mm10.chr5 C 0 I 1055 s canFam3.chr3 3796142 111 - 91889043 -gggctaatga-tccagtctctccatgcctcagtttcttcatttacaaaatgtg-gctaatagagcctatctcagagggttcttataaggattaaatgagttaatgtatggaat i canFam3.chr3 C 0 C 0 e ponAbe2.chr4 21656505 591 + 198332218 M e panTro4.chr4 21481363 72 + 193495092 I a score=207257.000000 s hg38.chr4_KI270790v1_alt 93148 111 + 220246 gtgcttaca--acagcacaagtactcaattaaaatgAACAATTCTGATGTCCACCTACTTTATCAAGATAGAAGATAAAATTATTAAACATATGGCGAA----TGCCTACAAGCTTC s nomLeu3.chr20 20269145 111 - 85365473 gtgcttaga--agagcacaagtactcaattaaaatgAACAATTCTGATGTCCACCTACTTTACCAAGATAGAAGATAAAATTATTAACTATATGGTGAA----TGCCTACAAGCTTC i nomLeu3.chr20 C 0 I 304 s rheMac3.chr5 16735461 111 + 184069350 gtgcttaga--actgcacaagtactcaattaaaatgAACAATTCCGATGTCCATCTACTTTACCAAGATAGAAGATAAAATTATTAAATATATGATGAA----TGCCTACAAGCTTC i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20784490 111 + 189454096 gtgcttaga--acTGCACAAGTACTCAACTAAAATGAACAATTCCGATGTCCATCTACTTTACCAAGATAGAAGATAAAATTATTAAATATATGATGAA----TGCCTACAAGCTTC i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16372537 111 + 178775436 GTGCTTAGA--ACTGCACAAGTACTcaattaaaatgaacaattccGATGTCCATCTACTTTACCAAGatagaagataaaattattaaatatatgatgaA----TGCCTACAAGCTTC i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19859103 100 - 48547382 gtgcttaga--acTGCACAAGTACTCAATTAAAATGAACAATTCCGATGTCCATCT-----------ATAGAAGATAAAATTATTAAATATATGATGAA----TGCCTACAAGCTTC i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21215442 117 - 190850796 gtgcttagaacacagcacaagcactcaatttaaatgAACAATTCTGATGGCCGCCTACTTTTCCAGGATAGAACACAAAATTATTAAATAGATGGTGAATGCCTGCCTACAAGCTTC i calJac3.chr3 C 0 C 0 s canFam3.chr3 3796253 111 - 91889043 gtgcttagg--ctatgacaagtaagtgctcaaACTCTACAGTCCTGATGTCCATCTCCTATTCCAAGATAAAAGGCAAAATCATTAAATGAGTAGTGAG----CATCTGAAGACTTC i canFam3.chr3 C 0 C 0 e mm10.chr5 49203381 1055 + 151834684 I e ponAbe2.chr4 21656505 591 + 198332218 M e panTro4.chr4 21481363 72 + 193495092 I a score=145721.000000 s hg38.chr4_KI270790v1_alt 93259 111 + 220246 AGACTTAGGA---GAATTTGATTGCAGCTATCAACAATAGACACTTACAAGTGCTTCCTAACATGTCTACACTCCAAATTCCCAAAGTGAATGAATGGCTCAGGAGATCCCAGA s rheMac3.chr5 16735572 111 + 184069350 AGACTTAGGA---AAATTTGACTGCAGTTATCAAGAACAGATACTTACAAATGCTTCCTAACATGTCTACACTCCAAATTCCCAAAGTGAATGAATAGTTCAGGAGATCCCAGG i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20784601 111 + 189454096 AGACTTAGGA---GAATTTGACTGCAGTTATCAAGAATAGATACTTACAAATGCTTCCTAACATGTCTACACTCCAAATTTCCAAAGTGAATGAATAGTTCAGGAGATCCCAGG i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16372648 111 + 178775436 AGACCTAGGA---GAATTTGACTGCAGTTATCAAGAATAGATACTTACAAATGCTTCCTAACATGTCTACACTCCAAATTCCCAAAGTGAATGAATAGTTCAGGAGATCCCAGG i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19859203 111 - 48547382 AGACTTAGGA---GAATTTGACTGCAGTTATCAAGAATAGACACTTACAAGTGCTTCCTAACATGTCTACACTCCAAATTCCCAAAGTGAATGAATAGCTCAGGAGATCCCAGT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21215559 111 - 190850796 AGGCTTGGGA---GAAATTGATTGCAGGTATCAAGAACAGATATTTACAAGTGATTCCTAACATATCTACACTCCAAATTTCCAAAGTGAATGAATGGCTCAGGAGATCCCAGG i calJac3.chr3 C 0 C 0 s canFam3.chr3 3796364 82 - 91889043 TGACCCAGGAAGGGGAATCGATTGCAGGGGTAGAGAACAGACATGCAT-AGTGCTTGCTCACATGTCAACACTCC-ACTGCCCA------------------------------ i canFam3.chr3 C 0 C 0 e mm10.chr5 49203381 1055 + 151834684 I e nomLeu3.chr20 20269256 304 - 85365473 I e ponAbe2.chr4 21656505 591 + 198332218 M e panTro4.chr4 21481363 72 + 193495092 I a score=76261.000000 s hg38.chr4_KI270790v1_alt 93370 40 + 220246 ATCAAATCAGGTGGACACTATTAGAAAGCACCCGATTTGA s ponAbe2.chr4 21657097 40 + 198332218 ATCAAATCAGGTGGACACTATTAGAAAGCACCTGATTTGA i ponAbe2.chr4 M 591 C 0 s rheMac3.chr5 16735683 40 + 184069350 ATCAAATCAGGTGGACACTATTCGAAAGCACCTGCTTTGA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20784712 40 + 189454096 ATCAAATCAGGTGGACACTATTCCAAAGCACCTGCTTTGA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16372759 40 + 178775436 ATCAAATCAGGTGGACACTATTCGAAAGCACCTGCTTTGA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19859314 40 - 48547382 ATCAAATCAGGTGGACACTATTAGAAAGCACCTACTTTGA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21215670 40 - 190850796 ATCAAATCAGGTGGACACTATTAGAAAGCCCCTAATTTGA i calJac3.chr3 C 0 C 0 s canFam3.chr3 3796446 29 - 91889043 -----------TGGACACGATTAGCAAAGACCTCATTTGT i canFam3.chr3 C 0 C 0 e mm10.chr5 49203381 1055 + 151834684 I e nomLeu3.chr20 20269256 304 - 85365473 I e panTro4.chr4 21481363 72 + 193495092 I a score=1328761.000000 s hg38.chr4_KI270790v1_alt 93410 514 + 220246 TCCCGGGATCTCCCCAGCCATTCATTCACTCTGGGACTCCGGGAATCCTTGCATGGGGAGAGCTTCTCACATATAAGCATAATGTTTATCTGTAGCTCTGCCAGTTTTCTTAGTCCTGTTCCTTTGAAGTCTAGCATTAAGTAG-GCCTAAGATGTCATGCAAGCCACTGTCCATGATACTGCTGGTCTCTCCAACTTGCATCTGCCTCCCTTTCTCACAGGTCACAGAAAAACCTATGCTTACCCTGAATTTTTCAGAACATAGTCACATAGCACAGCTGGTGGACTCTCTAGTAACAAAGCTATTTCCATTGTTCCACAATCATCTGCTTCACAAGAGACAACAGGCTCCTGAGAACTGGGGAGCTGAGACGCTGCAGGTGACAGTTGTATACAGACGT--GCAAAGTTCTTGGGATCTCTTCCAGGTTCTAATTCAGGCCCGGATGCTAAGGCTTGCCCTGCTCTGCAAGGCTTT-TACTCATGGTGCTTTTCTCTTAAAGGCTTTATTGTTTTG s ponAbe2.chr4 21657137 515 + 198332218 TCCCGGGATCTCCCCAGCCATTCATTCACTCTGGGACTCCGGGAATCCTTGCATGGGGAGAGCTTCTCACATATAAGCGTAATGTTTATCTGCAGCTCTGCCAGTTTTCTTAATCCTGTTCCTTTGAAGTCTAGCATTAAGTAG-GCCTAAGATGCCATGCAAGCCACTGTCCATGGTACTGCTGGTCTCTCCAACTTGCATCTGCCTCCCTTTCTTACAGGTCACAGAAAAACCTATGCTTACCCTGGATTTTTCAGAACATAGTCACATAGCACAGCTGGTGGACTCCCTAGTAACAAAGCTATTTCCATTGTTCCACAATCATCTTCTTCACAAAAGAAAACAGGCTCCTGA-AACTGGGGAGCTGAGATGCTGCAGGTGACAGTTGTATACAGTTGTATGCAAGGTTCTTGGGATCTCTTCCAGGTTCTAATTCAGGCCCGGATGCTAAGGCTTGCCCTGCTCTGCAAGACTTT-TACTCATGGTGCTTTTCTCTTAAAGGCTTTATTGTTTTG i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20269560 513 - 85365473 TCCCAGGATCTCCCCAGCCATTCATTCACTCTGGGACTCCGGGAATCCTTGCATGGGGAGAGCTTCTCACATACAAGCATAATGTTTATCTGCAGCTCTGCCAGTTTTCCTAGTCCTGCTCCTTTGAAGTCTAGCATTAAGTAG-GCCTAAGATGCCATGCAAGCCACTGTCCATGGTACTGCTGGTCTCTCCAGCTTGCATCTGCCTCCCTTTCTTACAGGTCACAGAAAAACCTATGCTTACCCTGGATTTTTCAGAACATAGTCACATAGCACAGCTGGTGGACTCCCTAGTAACATAGCGATTTCTATTTTTCCACAATCATCTTCTTCACAAGATA-AACAGGCTCCTGAGAACTGGGGAGCTGAGATGCTGCAGGTGACAGTTGTATACAGACAT--GCAAGGTTCTTGGGATCTCTTCCAGGTTCTAAATCAGGCCCGGATGCGAAGGCTTGCCCTGCTCTGCAAGATTTT-TACTCATGGTGCTTTTCTCTTAAAGGCTTTATTGTTTTG i nomLeu3.chr20 I 304 C 0 s rheMac3.chr5 16735723 505 + 184069350 TCCCAGGATCTCCCCAGCCATTCATTC--------ACTCCGGGAATCCTTGCATGGGGATAGCTTCTCACATATAAGCATAATGTTTATCTGCAGCTCTGCCAGTTTTCTTAGTCCTGCCCCTTTGAAGTCTAGCATTAAGTAG-GCCTAAGATGCCATTCAAGCCACTGTCTACGGTACTGCTGGTCTCTCCAACTTGCATCTGCCTCCTTTTCTTACAGGTCACAGAAAAACCTATGCTTATCCTAGATTTTTTGGAACATAGTCACATAGCACAGCTGGTGGACTCCCTAGGAACACAGCGATTTCCATTGTTCCACAATCATCTTCTTCACAAGATA-AACAGGCTCCTGAGAACTGGGGAGCTGAGATGCTGCAGGTGACATATGTATACAGATAT--TCAAGGTTCTTGGGATATCTTCCAGGTTCTAATTCAGGCCTGGATGCTAAGGCTTGCCCTGCTCTGCAAGACTTT-TACTCATGGTGCTTTTCTCTTAAAAGCTTTATTGTTTTG i rheMac3.chr5 C 0 I 2 s macFas5.chr5 20784752 504 + 189454096 TCCCAGGATCTCCCCAGCCATTCATTC--------ACTCTGGGAATCCTTGCATGGGGAGAGCTTCTCACATATAAGCATAATGTTTATCTGCAGCTCTGCCAGTTTTCTTAGTCCTGCCCCTTTGAAGTCTAGCATTAAGTAG-GCCTAAGATGCCATTCAAGCCACTGTCTACGGTACTGCTGGTCTCTCCAACTTGCATCTGCCTCCTTTTTTTACAGGTCACAGAAAAACCTATGCTTATCCTAGATTTTTTGGAACATAGTCACATAGCACAGCTGGTGGACTCCCTAGGAACACAGCGATTTCCATTATTCCACAATCATCTTCTTCACAAGATA-AACAGGCTCCTGAGAACTGGGGAGCTGAGATGCTGCAGGTGACATATGTATACAGATAT--TCAAGGTTCTTGGGATATCTTACA-GTTCTAATTCAGGCCTGGATGCTAAGGCTTGCCCTGCTCTGCAAGACTTT-TACTCATGGTGCTTTTCTCTTAAAAGCTTTATTGTTTTG i macFas5.chr5 C 0 I 4 s papAnu2.chr5 16372799 505 + 178775436 TCCCAGGATCTCcccagccattcattc--------attccggGAATCCTTGCATGGGGAGAGCTTCTCACATATAAGCATAATGTTTATCTGCAGCTCTGCCAGTTTTCTTAGTCCTGCTCCTTTGAAGTCTAGCATTAAGTAG-GCCTAAGATGCCATTCAAGCCACTGTCCATGGTACTGCTGGTCTCTCCAACTTGCATCTGCCTCCTTTTCTTACAGGTCACAGAAAAACCTATGCTTATCCTAGATTTTTTGGAACATAGTCACATAGCACAGCTGGTGGACTCCCTAGGAACACAGCGATTTCCATTGTTCCACAATCATCTTCTTCACAAGATA-AACAGGCTCCTGAGAACTGGGGAGCTGAGATGCTGCAGGTGACATATGCATACAGATAT--TCAAGGTTCTTGGGATATCTTCCAGGTTCTAATTCAGGCCCGGATGCTAAGGCTTGCCCTGCTCTGCAAGACTTT-TACTCATGATGCTTTTCTCTTAAaagctttattgttttg i papAnu2.chr5 C 0 I 1 s chlSab2.chr27 19859354 513 - 48547382 TCCCAGGATCTCCCCAGCCATTCATTCACTCTGGGACTCCGGGAATCCTTGCATGGGGAGAGCTTCTCACATATAAGCATAATGTTTATCTGCAGCTCTGCCAGTTTTCTTAGTCCCGCTCCTTTGAAGTCTAGCATTAAGTAG-GCCTAAGATGCCATGCAAGCCGCTGTCCACGGTACTGCTGGTCTCTCCAACTTGCATCTGCCTCCTTTTCTTACAGGTCACAGAAAAACCTATGCTTATCCTAAATTTTTTGGAACATAGTCACATAGCACAGCTGGTGGACTCCCTAGGAACACAGCGATTTCCATTGTTCCACAATCATCTTCTTCACAAGATA-AACAGGCTCCTGAGAACTGGGGGGCTGAGATGCTGCAGGTGACATATGCATACAGATAT--TCAAGGTTCTTGGGATATCTTCCAGGTTCTAATTCAGGCCCGGATGCTAAGGCTTGCCCTGCTCTGCAAGACTTT-TACTCATGGTGCTTTTCTCTTGAAAGCTTTATTGTTTTG i chlSab2.chr27 C 0 I 1 s calJac3.chr3 21215710 511 - 190850796 TCCCAGGATCCCCCCAGCCATTCATTCACTCTGGGACTCCAGGAATCCTTGTATGGGGAGAACTTCTCACATATAAGCATAATGTTTGCCTACAGCTCTGTCAGTTTTCTTAGTCCTGCTCCTTTGAAGTCTAGCATTAAGTAG-GTTCAAGATGCCATACAAGTCACTGTCCATGGTACTGCTGGTCTCTCCAACTTGCATCTGCCTCCCTTTCTTATGGGATACAGAAAAACTTATGTTTACCCT-GATTTTTCAGAACATATTCACATAGCACAGCTGGTGGGGTCCCTGGTAACACAGTGATTTCCATTGTTCCACAGCTATCTTCTTCACAGGATA-AACAGCCTCCTGAGAACTGGGGAGCAG-GATGCTGCAGGTGACAGTTGTATACAGATAT--GCAAGGTTCCTGGGATCTCTTCCAGGTTCTAATTCGGGCCTCGATGCTAAGGCTTGCCCTGCTCTGCAACACTTT-TACTCATGGCACTTTTCTCTTAAAGGCTCTGTTGTTTAG i calJac3.chr3 C 0 C 0 s canFam3.chr3 3796475 496 - 91889043 CTGCAGACTCTCCCAAGCCATTCATTC--------ACTCTGGGAATCTTGGTACCTGGAGGG-TGCCCACATATAAAC--AGTGCCTTCCTGCAGCTCTGCGGGTTTTCGTAATCCTTCTCCACTGGTGGATGGCTCGCAGCTGCACACAGGGCAACTCCCACGCCACTGTCCATGGTACTGCTGGCCCCTCAGCAACGCTTTGGCCTACCTTTCTTCTAAACCACTGTTAAACCTGTGCTTACCCAGGATTTTTCAAAGAGTATTGCCATAGCTCAGA-AATGTGCTCCCTGGTAATATAATGATTTCCGATGTCCCACAACCATCTTCTTCACATGAAA-ACCAGGCTTCTGGTAATGGGGGAGCAGAGATGCTTTAGGTGG----TGTACATAGAGAT--GCAAAGGGCCAAAAACCACTGTTGGGTTCTGATTCGGACCCAGATGCTCAGTCTAGCCC-ATTCTGTCAGACTTTATACTCATGGTACTTTTCATGTAAGAGCCTCACTTTTG-- i canFam3.chr3 C 0 C 0 e mm10.chr5 49203381 1055 + 151834684 I e panTro4.chr4 21481363 72 + 193495092 I a score=2352036.000000 s hg38.chr4_KI270790v1_alt 93924 943 + 220246 TTTTTTCATGATGGTCCTTATTACAGACATTTCCCTCTCTACT-CTACATT---CCCTTTCTATTCCCTCTGtattc-----------ttccacaactaattaccacaaccttagaagcttaaagaaacacaaatttattgtctgacattttctatagg-tc-agaagtccagtggtcactgccacgtctttatttagaatctcacaagcctgatataaaggtgtctgcggggctgccttactttctgaaacctctagaggaatgtctctgttcttgctcattcaggctgctggct-gagcttagttccttgtgct-gtgcaactgagatccacatttcctt----gatgtcagctaa----ggaccattcttagattctagaaattacctgcattccttggcttgtgtctccttcctccattttcaaaggcatcaatggt-ggccgagtccttcttacatcaaac------ttctctga----ctcttctgtgttcctcttctgtttttgagaatccatgtgattacattggggcctccaggataatctccccatatcgaggtccatagcctttatcacatctgccaggtcttttttt--gccatgtaatataacataaaatagtcacagaatctagagattaaggtgtaagcatcattgTAGAACATTAGTCAGTCAAGCACTGCCTCTTGTACTCCAGTCATCAGGGTCATTAGATCTACATATGTCTGAAATTTTTGCTTCTAATTTTCTCCCACAGACTCCG--AGTTCTCAAAGAAAATCAAGGCATATGGCTGGGCATCTCTTTTAGCATCCTTGAACAGTCTGTAATGGCCCAAATGTA--------CTTCAAGAATGCAGC-AATTGAAAACAA-GTCACCC-GGAGCACACAGACTAGAGGTAGGTGGTGCTTCCTCACAGCCAAAATGTTGCCTCATCACTGACCAGCCAAAGGTGATCCATTTCATCCATATTAAGAGATACTG s ponAbe2.chr4 21657652 946 + 198332218 TTTTTTAATGATGGTCCTTATTACAGACATTTCCCTCCCTACT-CTACATT---CCCTTTCTATTCCCTGTGtattc-----------ttccataactaattaccacaatcttagaagcttaaagaaacacaaatttattgtctgacattttctatagg-tc-agaagtccagtggtgactgccacatctttatttagaatctcacaagcctgatataaaggtgtctgcagggctgccttactttctgaaagctctagaggaatgtctctgttcttgctcattcaggctgctggct-gagcttagttccttgtgct-gtgcaactgagatccacatttcctt----gatgtcagctaa----ggaccattcttagattctagaaattacccgcattccttggcttgtgtctccttcctccattttcaaaggcatcaattgt-ggctgagtccttcttacgtcaaac------ttctctga----ctcttctgtgttcctcttctgtttttaagaattcatgtgattacattggggcctccaggataatctctccatatcgaggtccatagccttcatcacatctgccagatctttttttttgccat-taatataacacaaaatagtcacagaatctagagcttaaggtgtaagcatcattgCAGAACATTAGTCAGTCAAGCACCACCTCTTGTACTCCAGCCATCAGGGTCATTAGGTCTACATATGTCTGAAATTTTTGCTTCGAATTTTCTCCCACAGACTCCC-CAGTTCTCAAAGAAAATCAAGGCATATGGCTGGGCATCTCTTTTACCATCCTTGAACAGTCTGTAATGGCCCAAATGTA--------CTCCAAGAATGCAGC-AATTGAAAACAA-GTCACCCCGGAGCACACAGACTGGAGGTAGGTGGTGCTTCCTCACAGCCAAAATGTTGCCTCATCACTGACCAGCCAAAGGTGATCCATTTCATCCATATTAAGAGATACTG i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20270073 936 - 85365473 TTTTTTCATGATGGTCCTTATTACAGACATTTCCCT-----CT-CTACATT---CCCTTTCTATTCCCTCTGtattc-----------ttccataactaattactacaaccttagaagcttaaagaaacacaaatttattgtctgacattttctatagg-tc-agaagtccagtggtcactgccatgtctttgtttagaatctcacaagcctgatataaaggtgtctgcagggctgtcttactttctgaaagctctagaggaatg--tctgttcttgctcattcaggctgctggct-gagcttagttccttgtgct-gtgcaactgagatccacatttcctt----gatgtcagctaa----ggaccattcttagattctagaaattacctgcattcctcggcttgtgtctccttcctacattttcaaaggcatcaatggt-ggctgagtccttcttacatcaaac------ttctctga----ctct--tgtgttcctcttctgtttttaagaattcacgtgattacattggggcctccaggataatctccccatatcgaggtccatagccttcatcacacctgccaggtcttttttt--gccatgtaatataacataaaatagtcacagaatctagagattaaggtgtaagcatcattgCAGAACATTAGTCAGTCAAGCACCACCTCTTGTACTCCAGCCATCAGGGTCATTGGGTCTACATATGTCTGAAATTTTTGCTTCTAATTTTCTCCCACAGACTCCC-CAGTTCTCAAAGAAAATCAAGGCATATGGCTGGGCATCTCTTTTAGCATCCTTGAACAGTCTGTAATGGCCCAAATGTA--------GTCCAAGAATGCAGCAAATTGAAAACAA-GTCACCT-GGAGCACACAGACTGGAGGTAGGTGGTGCTTCCTCACAGCCAAAATGTTGCCTCATCACTGACCAGCCAAAGGTGATCCATTTCATCCATATTAAGAGATACTG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16736230 934 + 184069350 TTTTTTCATGATGGTCCTTATTACAGACATTTCCCTTTCTACT-CTATATT---CCCTTTCTATTCCCTCTGtattc-----------ttccattactgattaccacaaccttagaagcttaaagaaacacaaatttattgtctcacactttctatagg-tc-agaagtccagtgatcactgccacgtctctgtttatgatctcacaaacctgatatacatgtatctgcagggctgccttactttctgaaagctctagaggaatgtctttgttctcgctcattcaggctgctggct-gagcttagttccttgtgct-gtgcaattgagatccacatgtcttt----gatgtcagctaa----ggaccattctcagattctagaaattacctgcattccttggcttgtgtctc---cctccgttttcaaaggcatcaatggt-ggctgagtccttctcacatcacac------ttttctga----ctcttctgtgtttctcttctgcttttaagaattcatgtgattacattggggccaccaggataatc-ccccatattgaggtccatagccttcatcacatctgccaggtctttttt---gccatgtaatat-----acaatactcacagaatctagagattaaggtgtaggcatcattgCAGAACATTAGTCAGTCAAGCACTGCCTCTTGTACTCCAGCCATCAGGGTCATTAGGTCTACATATGTCTGAACTTTTTGCTTCTAATTTTCTCCCACAGACTCCC-CAGCTCTCAAAGAAAATCAAGGCATATGGCTGGGCATCTCTTTTAGCATCCTTGAACAGTCTGTAATGGCCCAAAGGTA--------CTCCAAGAATGCAGC-AATTGAAAACAA-GTCACCC-AGAGCACACAGACTGGAGGTAGGTGATGCTTCCTCACAGCCAAAATGTAGCCTCATCACTGACCAGCCAAAGGTGGTCCATTTCATCCATATTAAGAGATACTG i rheMac3.chr5 I 2 C 0 s macFas5.chr5 20785260 934 + 189454096 TTTTTTCATGATGGTCCTTATTACAGACATTTCCCTTTCTACT-CTATATT---CCCTTTCTATTCCCTCTGtattc-----------ttccattactgattaccacaaccttagaagcttaaagaaacacaaatttattgtctcacactttctatagg-tc-agaagtccagtggtcactgccacgtctctgtttatgatctcacaaacctgatatacatgtatctgcagggctgccttactttctgaaagctctagaggaatgtctttgttcttgctcattcaggctgctggct-gagcttagttccttgtgct-gtgcaattgagatccacatttcttt----gatgtcagctaa----ggaccattctcagattctagaaattacctgcattccttggcttgtgtctc---cctccgttttcaaaggcatcaatggt-ggctgagtccttctcacatcacac------ttttctga----ctcttctgtgtttctcttctgcttttaagaattcatgtgattacattggggccaccaggataatc-ccccatattgaggtccatagccttcatcacatctgccaggtctttttt---gccatgtaatat-----acaatactcacagaatctagagattaaggtgtaggcatcattgCAGAACATTAGTCAGTCAAGCACTGCCTCTTGTACTCCAGCCATCAGGGTCATTAGGTCTACATATGTCTGAACTTTTTGCTTCTAATTTTCTCCCACAGACTCCC-CAGCTCTCAAAGAAAATCAAGGCATATGGCTGGGCATCTCTTTTAGCATCCTTGAACAGTCTGTAATGGCCCAAAGGTA--------CTCCAAGAATGCAGC-AATTGAAAACAA-GTCACCC-AGAGCACACAGACTGGAGGTAGGTGATGCTTCCTCACAGCCAAAATGTAGCCTCATCACTGACCAGCCAAAGGTGGTCCATTTCATCCATATTAAGAGATACTG i macFas5.chr5 I 4 C 0 s papAnu2.chr5 16373305 937 + 178775436 ttttttcatgatgGTCCTTATTACAGACATTTCCCTTTCTACT-CTATATT---CCCTTTCTATTCCCTCTGTATTC-----------TTCCATTACTAATTACCACAACCTTAGAAGcttaaagaaacacaaatttattgtctcacattttctatagg-tc-agaagtccagTGGTCACTGCTACGTCTCTGTTTATGATCTCACAAACCTGATATACATGTGTCTGCAGGGCTGCCTTACTTTCTGAAAGCTCTAGAGGAATGTCTTTGTTCTTGCTCATTCAGGCTGCTGGCT-GAGCTTAGTTCCTTGTGCT-GTGCAATTGAGATCCACATTTCTTT----GATGTCAGCTAA----GGACCATTCTCAGATTCTAGAAAttacctgcattccttggcttgtgtcTCCTTCCTCCGTTTTCAAAGGCAGCAATGGT-GGCTGAGTCCTTCTCACATCACAC------TTCTCTGA----CTCTTCTGTACTCCTCTTCTGCTTTTAAGAATTCATGTGATTACACTGGGGCCACCAGGATAATC-CCTCATACTGAGGTCCATAGCCTTCATCACATCTGCCAGGTCTTTTTT---GCCATGTAATAT-----ACAATACTCATATAATCTAGAGATTAAGGTGTAGGCATCATTGCAGAACATTAGTCAGTCAAGCACTGCCTCTTGTACTCCAGCCATCAGGGTCATTAGGTCTACATATGTCTGAACTTTTTGCTTCTAATTTTCTCCCACAGACTCCC-CAGCTCTCAAAGAAAATCAAGGCATATGGCTGGGCATCTCTTTTAGCATCCTTGAACAGTCTGTAATGGCCCAAATGTA--------CTCCAAGAATGCAGC-AATTGAAAACAA-ATCACCC-GGAGCACATAGACTGGAGGTAGGTGGTGCTTCCTCACAGCCAAAATGTAGCCTCATCACTGACCAGCCAAAGGTGGTCCATTTCATCCATATTAAGAGATACTG i papAnu2.chr5 I 1 C 0 s chlSab2.chr27 19859868 855 - 48547382 TTTTTTCATGATGGTCCTTATTACAGACATTTCCCTTTCTACT-CTATATT---CCCTTTCTATTCCCTCTGtattc-----------ttccattactaattaccacaaccttagaaccttaaagaaacacaaatttattgtctcacattttctatagg-tc-agaagtccagtggtcactgccacgtctctgtttatgatctcacaaacctgatatacatgtgtctgcagggctgccttactttctgaacgctctagaggaatgtctttgttcttgcttattcaggctgctggct-gaacttagttccttgtgct-gtgccattgagatccacatttcttt----gatgtcagctaa----ggaccattctcagattctagaaattacctgcattccttggcttgtgtctc---cctccgttttcaaaggcatcaatggt-ggctgagtccttctcacatcacac------ttctctga----ctcttctgtgttcctcttctgtttttaagaattcatgtgattacattggggccaccaggataatc-ccccatattgaggtccatagccttcatcacatctgccaggtctttttt---gccatgtaatat-----acaatactcacagaatctagagattaaggtgtaggcatcattgCAGAACATTAGTCAGTCAAGCACTGCCTCTTGTACTCCAGCCATCAGGGTCATTAGGTCTACATATGTCTGAACTTTTTGCTTCTAATTTTCTCCCACAGACTCCC-TAGCTCTCAAAGAAAATCAAGGCATATGGCTGGGCATCTCTTTTAGCATCCTTGAACAGTCTGTAATGGCCCAAATGTA--------CTCCAAGAATGCAGC-AATTTAAAACAA-GTCACCA-GGAGCACACAGACTAGAGGTAGGTG------------------------------------------------------------------------------- i chlSab2.chr27 I 1 C 0 s calJac3.chr3 21216221 936 - 190850796 TTTTTCCATGGTGGTCCATATTACAGACATTTCCCTCTCTACT-CTATATT---TCCTTCCtattccctctgtattccctctgtattTTTccattactaattaccacaaccttagaatcttaaagaaatacaagtttattgtctcacattttctataag-tc-agaagtccagtggtcactgctttgcctgtgtttagaatcttatgaggctgaaataaaggtgtctgcagggttgccttactttccgaaagctctggaggaaagtcttttttcttgttcattcaggctgtcagat-gagcttagttccttatgct-gtgcaactgagatccacatttcctt----gctgtcagctaa----ggatcattcttagattctagaaattactagcattccttggtttgtgtctccttcctccattttcaaagccatcagtggt-ggctgagtc---ctcacatcacac------ttctctga----ctcttctgtgttcctcttctac-tttaagagttcatgtgattacattggggccaccaggataatc-tcctatatcacgatccatagccttcctcacatctacatggtcttttt----gacatgtaatataacaaacaatactcacaggatctagagattaaggtgtaggcaCAATCGCAGAACATTAGTCAATCAAGCATCACCTATTGTACTCCAGCCATCAGGGTCATTAGGTCTACATAAGTCTGAACTTTTTGCTACTAATTTTCTCCCACACACTCCCAAAGCTCTCTCAGAAAATCAA------------GGCATCTCTTTCAGCATCCTCGAACA-TCTGTAATGGCTCAAATGTA--------CTCCCAGAATGCAGC-AATTGAAAACAA-GTCATCCCAGAGCACACA-CCTGGGGATAGATGGTGCTTCTTCACAGGCAAAATGTAGCCTCATCACTGACCAGCCAAAGGTTATCCATTTCATCCAGATTAAGAGATACTC i calJac3.chr3 C 0 C 0 s mm10.chr5 49204436 812 + 151834684 TTCTTTCATGAGGGTCTGTATAATAGCTGCTTTCATTTCTACCACTGCAAT---GACTTTCT--------CATATCA-----------ATCca------aacaccacaaatttagcatct--aaaacatacaaagtgttcatct---------tatagattc-agaagtctatcaggcttttcaaa--cattctttctaacttactggtactgaaatcaatgcatttgcaag------ctgtgttcaaggagttttacagataatcc---------------tcaggctgctgaccaaagaacagttc----------tgc-atagaggactccataac-tg----actgtcagctgaccatgagcctctctcgaattctagaaattagctagctcctttggtttgtgaccccattttccactttcaagagcagtcatggt-ggatgcaacctcctcatgccatatgggctaccatctgatgggtcatcctgctttacccttct-------aaggcttgtgtgattaaattgagaccaaatggatagtctgtctaccacaagat------ttttaatgacatcagcaaggtatgatt----gccatactgtgt-----agcacattcccagaatctatagactaaggtagagacatcACT--------------------------CCT------CTCCACCCATCCAGATTATTAGGTTCACATATGTCT-AACTCCTTTTTTAGAACTTAT-------GACTGCA---------AAAGAAAATGAA---ATATGGCTGAGAATTTCTTT------------AAAATATGAACTGGTACAGAAGTAGAAGTATCTTTCAAAAGTAAAAT-AA--GAAAAGAAGGTCATAGTAGATTTCAAAGACTGTGGGCAGGAGTTGTTTTCAGACACCAAAGCTATTA--TCATCGCCAACGTGCCAAAGGCAGTCACTCGAATTC-----------TAC-- i mm10.chr5 I 1055 C 0 s canFam3.chr3 3796971 867 - 91889043 -TTTCCCACAGTGCTCTTTATTATGGACTTTCCCCTCCCTGCTCCTATATTAAGCACttttcaat---------tgc-----------tgccattacaaattaccactaatttagcatgctaaagaaacatcaatttattgtctcacattttccacagg-tagaagagtctagcagatacagctg----tctgtttagaatctcacaaggctgaaatcgtagtgttggtgagactg-----------------tccagggaaacatccttctccttgatcatgcaggtt--------gaattcagttccttgtcatggtaaaactggggtccccttttccttgctgggtgccaattga----gggccatcctcagattcccaaaactgccttcattccttggcttgtggatctttcttccatattcaaaggcagcaattgtagattgcatcctgcccacatcacct------gtctcaga----ctattttgcctttctcttattcttttga---ttcatgcaattatattggacccaccaggataatctctgcatatcatggtctataacctcactcacatttgcaaagttcactg----aatgtataatgt-----aatacattcccaggctctagagatca------aagaatctttgggggccactattcagtcaagca---cCTACCATACCTCCACCA----GTCCATTAGGCCTATAAATGTCTTAACTCCTCGGTTCTAGTTCTTTCCCACAGGGCCTC---TCTCTCCATGTAAATCTAAGTATATGGCTATGTATGTCTT--AGCATCCCTGAATGGTGTGTGAC-GCCAAAATGAA--------CTCCAAGAATATAGC-AACTGAA------GTCATTC------ACACAGACTGCGGGTGGGTGATGCTTTCTGATGGGAAAAGCTTGGCCTCA-----------CCAAAGGCCAT-AGTTTTATCCATATTAAAAGATACAg i canFam3.chr3 C 0 I 208 e panTro4.chr4 21481363 72 + 193495092 I a score=42820.000000 s hg38.chr4_KI270790v1_alt 94867 17 + 220246 AAAATACTAGGAGAACT s ponAbe2.chr4 21658598 17 + 198332218 AAAATACTAGGAGAACT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20271009 17 - 85365473 AAAATACTAGGAGAACC i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16737164 17 + 184069350 AAAATACTAGAAGAACT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20786194 17 + 189454096 AAAATACTAGAAGAACT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16374242 17 + 178775436 AAAGTACTAGAAGAACT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19860723 14 - 48547382 ---GTACTAGGAGAACT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21217157 16 - 190850796 ACAGTACCAGGAGAAC- i calJac3.chr3 C 0 C 0 s mm10.chr5 49205248 17 + 151834684 AAAGCATTGGGAGAAAA i mm10.chr5 C 0 I 2 s canFam3.chr3 3798046 17 - 91889043 aaaatcctgtgagaact i canFam3.chr3 I 208 C 0 e panTro4.chr4 21481363 72 + 193495092 I a score=710111.000000 s hg38.chr4_KI270790v1_alt 94884 191 + 220246 GATGAGAGATAAACTGACTTTCCTGGGAGAATTTAGTAAAAGTCCTCCAAGAGA-TTATGTTCAATTTGAAATTTGAAGTATGCAGGAAGTTTAATAGGAAGAACAGGAATGGATAGGAGAAATCATTTCAAGTAAATAGAAAAGCAAGAATATGCTTGTGAATAATGAGAAAAATAAATTTTGAATAAAAT s panTro4.chr4 21481435 191 + 193495092 GATGAGAGATAAACTGACTTTCCTGGGAGAATTTAGTAAAAGTCCTCCAAGAGA-TTATGTTCAATTTGAACTTTGAAGTATGCAGGAAGTTTAATAGGAAGAACAGGAATGGATAGGAGAAATCATTTCAAGTAAATAGAAAAGCAAGAATATGCTTGTGAATAATGAGAAAAATAAATTTTGAATAAAAT i panTro4.chr4 I 72 C 0 s ponAbe2.chr4 21658615 191 + 198332218 GATGAGAGATAAACTGACTTTCCTGGGAGAATTTAGTAAAAGATCTCCAAGAGA-TTATGTTCAATTTGAACTTTGAAGTATGCAGGGAGTTTAATAGGAAGAACAGGAATGGATAGGAGAAATCATTTGAAGTAAATAGAAAAGCAAGAATATGCTTGTGAATAATGAGAAAAATAAATTTTGAATAAAAT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20271026 191 - 85365473 GATGAGAGATAAACTGACTTTCCTGGGAGAATTTAGTAAAAGACCTCTAAGAGA-TTATGTTCAATTTGAACTTTGAAGTATGCAGGGAGTTTAATAGGATGAACAGGAATGGATAGGAGGAATCATTTCAAGTACATAGAAAAGCAAGAATATGCTTGTGAATAATGAGAAAAATAAATTTTGAATAAAAT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16737181 191 + 184069350 GATGAGAGATAAACTGACTTTCCTGGGAGAATTTAGTAGAAGACCTCCAAGAGA-TTATGTTCAATTTGAACTTTGAAGTATGCAGGGAGTTTAATAGGAGGCACAGGAATGGATAGGAGAAATCATTTCAAGTAAATAGAAAAGCAAGTATATGCTTGTGAATAATAAGAAAAATACATTTTGAATAAAAG i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20786211 191 + 189454096 GATGAGAGATAAACTGACTTTCCTGGGAGAATTTAGTAAAAGACCTCCAAGAGA-TTATGTTCAATTTGAACTTTGAAGTATGCAGGGAGTTTAATAGGAGGCACAGGAATGGATAGGAGAAATCATTTCAAGTAAATAGAAAAGCAAGTATATGCTTGTGAATAATGAGAAAAATACATTTTGAATAAAAG i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16374259 191 + 178775436 GATGAGAGATAAACTGACTTTCCTGGGAGAATTTAGTAAAAGACCTCCAAGAGA-TTATGTTCAATTTGAACTTTGAAGTATGCAGGGAGTTTAATAGGAGGCACAGGAATGGATAGGAGAAATCATTTCAAGTAAATAGAAAAGCAAGTATATGCTtgtgaataatgagaaaaatacattttgaataaaag i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19860737 192 - 48547382 GATGAGAGATAAACTGACTTTCCTGGGAGAATTTGGTAAAAGACCTCCAAGAGATTTATGTTCCATTTTAATTTTGAAGTATGCAGGGAGTTTAATAAGAGGCACAGGAATGGATAGGAGAAATCATTTCAAGTAAATAGAAAAGCAAGTATATGCCTGTGAATAATGAGAAAAATACATTTTGAATAAAAG i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21217173 188 - 190850796 --TGAGAGATAAATTGACTTTCCCGGGAGAAATTAGTAAAAGACTTCCAGGAAA-TTATGTTCAGTTTGAGCTTTGAAGTATGCAGGGAGTTTAACAGGAGGACCAGGAATGGATAGAAGAAATCTTTTTAACTAAATAGAAAAGCAAGTATATGCTTGTGAATATTGAGAAAAATAAA-TTTGAATAAAAT i calJac3.chr3 C 0 C 0 s mm10.chr5 49205267 177 + 151834684 GAGCAAAGACACATTAGCTTTACTCATAAAATTCAG-AAAAGGTTTCCACGAAG-TTGTGTTTAACTTGAGTTTTGTAGTATGTGGGTAGTTTAAT----------GGAATGG-TAGGAGAAATCTCGTTAAGAGAAGAGAAAATCAAGTACATAGCTGTGCATCTTGAGAAAAACAA--TTTGAATATGTC i mm10.chr5 I 2 I 113 s canFam3.chr3 3798063 187 - 91889043 ggtgaaagataaactggctttgctgagtgaattaaagaataggcttcca-gaga-ttgcatttaagttgagctttggagtgtgaa--cagtttagtaggatgaagggaaataggcaggagaaataattttaagtatatagaagagcaaatacatggccatgaatgttgggaaagaTAAATTTTGGAGAAAA- i canFam3.chr3 C 0 C 0 a score=1316962.000000 s hg38.chr4_KI270790v1_alt 95075 397 + 220246 TAtgggtgtgtgtttgtg---------------------------------------------------tatctat-tgtatgtatgtgtg-------tttgAATAAGGCATAC---------------TGATATTATGTATTGGTCAACCACAATATAGGAAAATAAATTGAAGGG---CATCTC-------TTTAAAT--CTTACAGGTAG------TCCATGCTTTCCAC--AGTACCAGCATTATGTTAAATG-A-ATTCATTCA-----------------------------------------TAGTGATCAATTCCTCACTTCGCATGAGTTACAGTTAATATGGTTCTGTGCAAAACAAGGACAGCCTGTATGTCTATTTTTAATCAAAGATCTGAATTGCTGACTACAGGGCATACTCATTAATTCAGACACCTCTGAAGATAGAAAAATTTGC----------------TAGGACTAGATTTGAAGGGG-ATCTTTAAAAATTAGAGCAACAAGTAATCACAATGAAGATGATATTTCTT s panTro4.chr4 21481626 397 + 193495092 TATGGGTGTGTGTTTGTG---------------------------------------------------TATCTAT-TGTATGTATGTGTG-------TTTGAATAAGGCATAC---------------TGATATTATGTATTGGTCAACCACAATATAGGAAAATAAATTGAAGGG---CATCTC-------TTTAAAT--CTTACAGGTAG------TCCATGCTTTCCAC--AGTACCAGCATTATGTTAAAGG-A-ATTCATTCA-----------------------------------------TAGTGATCAATTCCTCACTTCGCACGAGTTACAGTTAACATGGTTCTGTGCAAAACAAGGACAGCCTATATGTCTATTTTTAATCAAAGATCTGAATTGCTGACTACAGGGCATACTCATTAATTCAGACACCTCTGAAGATAGAAAAATTTGC----------------TAGGACTAGATTTGAAGGGG-GTCTTTAAAAATTAGAGCAACAAGTAATCACAATGAAGATGATATTTCTT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21658806 397 + 198332218 TATGGGTGTGTGTTTGTA---------------------------------------------------TATGTAT-TGTATGTATGTGTG-------TTTGAATAAGGCATAC---------------TGATATTATGCATTGGTCAACCACAATATAGGAAAATAAATTGAAGGG---CATCTC-------TTTAAAT--CTTACAGGTAG------TCCATGCTTTCCAC--AGTACCAGCATTATGTTAAATG-A-ATTCATTCA-----------------------------------------TACTGATCAATTCCTCACTTCGCATGAGTTACAGTTAATACGGTTCTGTGCAAAACAAGGACAGCCTGTATGTCTATTTTTAATAAAAGATCTGAATTGCTGACTACAGGGCATACTCATTAATTCAGACACCTCTGAGGACAGAAAAATTTGC----------------TAGGACTAGATTTGAAGGGG-ATCTTTAAAAATTAGAGCAACAAGTAATCACAATGAAGATGATATTTCTT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20271217 397 - 85365473 TAtgggtgtgtgtttgtg---------------------------------------------------tatgtat-tgtaagtatgtgtg-------tttgAATAAGGCATAC---------------TGCTATTATGTATTGGTCAACCACAATATAGGAAAATAAATTGAAGGA---CATCTC-------TTTAAAT--CTTACAGCTAG------TCCATGCTTTGCAC--AGTACCAGCATTGTGTTAAATG-A-ATTCATTCA-----------------------------------------TACTGATCAATTCCTCACTTCGCATGAGTTACAGTTAACGTGATTTTGTGCAAAACAAGGACAGCCTGTATGTCCATTTTTAATCAAAGATCTCAGTTGCTGACTACAGGGCATACTCATTAATTCAGACACCTCTGAAGATAGAAAAATTTGC----------------TAGGACTAGATTCGAAGGGG-ATCTTTAAAAATTAGAGCAACAAGTAATCACAATGAAGATGATATTTCTT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16737372 423 + 184069350 TATGGGTGTGTTTCTGTG---------------------------------------------------TATGTAT-TGTATGGATGTGTG-------TTTGAATAAGGCATAC---------------TGATATTATGTATTGGTCAACCACAATATAGGAAAATAAATTGAAGGG---CATCTC-------TTTAAAT--CTTACAGGTAG------TCCATGCTTTGCAC--AGTGCCAGCATTATGTTAAATG-A-ATTCATTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----------------ACTTTGCATGAGTTATAGTTAATATGGTTCTGTGCAAAACAAGGACAGCCTGTATGTCTATTTTTAATCAAAGATCTGAATTGCTGACTACAGGGCATACTCATTAATTCAGACGCCTCTGAAGATAGAAAAATTTGC----------------TAGGACTAGATTTGAAGGGGAATCTTTAAAAATTAGAGCAACAAGTAATCACAGTGAAGATGATATTTCTT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20786402 397 + 189454096 TATGGgtgtgtttctgtg---------------------------------------------------tatgtat-tgtatggatgtgtg-------tttgaatAA-GCATAC---------------TGATATTATGTATTGGTCAACCACAATATAGGAAAATAAATTGAAGGG---CATCTC-------TTTAAAT--CTTACAGGTAG------TCCATGCTTTGCAC--AGTACCAGCATTATATTAAATG-A-ATTCATTCA-----------------------------------------TACTGACCAATTCTTCACTTTGCATGAGTTATAGTTAATATGGTTCTGTGCAAAACAAGGACAGCCTGTATGTCTATTTTTAATCAAAGATCTGAATTGCTGACTACAGGGCATACTCATTAATTCAGACGCCTCTGAAGATAGAAAAATTTGC----------------TAGGACTAGATTTGAAGGGGAATCTTTAAAAATTAGAGCAACAAGTAATCACAGTGAAGATGATATTTCTT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16374450 398 + 178775436 tatgggtgtgtttctgtg---------------------------------------------------tatgtat-TGTATGGATGTATG-------TTTGAATAAGGCATAC---------------TGATATTATGTATTGGTCAACCAcaatataggaaaataaattgaAGGG---CATCTC-------TTTACAT--CTTACAGGTAG------TCCATGCTTTGCAC--AGTACCAGCATTATGTTAAACG-A-ATTCATTCA-----------------------------------------TACTGACCAATTCTTCACTTCGCATGAGTTATAGTTAATATGGTTCTGTGCAAAACAAGGACAGCCTGTATGTCTATTTTTAATCAAAGATCTGAATTGCTGACTACAGGGCATACTCATTAATTCAGACGCCTCTGAAGATAGAAAAATTTGC----------------TAGGACTAGATTTGAAGgggaatctttaaaaattagagcAACAAGTAATTACAGTGAAGATGATATTTCTT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19860929 397 - 48547382 TATGGgtgtgtttctgtg---------------------------------------------------tatgtat-tgtatgtatgtgtg-------tttgaatAAGGCATAC---------------TGATATTATGTATTGGTCAACCACAATATAGGAAAATAAATTGAAGGG---CATCTC-------TTTAAAT--CTTACAGGTAG------TCCATGCTTTGCAC--AGTACCAGCATTATGTTAAACG-A-ATTCATTCA-----------------------------------------TACTGACCAATTCCTCACTTCGCATGAGTTACAGTTAATATGGTTCTGTGCAAAACAAGGACAGCCTGTATGTCTATTTTTAATCAAAGATCTGAATTGCTGACTACAGGGCATACTCATTAATTCAGACGCCTCTGAAGATAGAAAAATTTGC----------------TAGGACTAGATTTGAAGGGG-ATCTTTAAAACTTAAAGCAACAAGTAATCACAGTGAAGATGATATTTCTT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21217361 403 - 190850796 TATGGAGGGGTACCTGTG---------------------------------------------------TATGTAT-TGTATTTATGTGTG-------TTTGAATCAGGCATAC---------------TGATATTATGTATAGATCAGTCTCAATATAGGAAAATAAATCAAAGGG---CATCTCTGATGTTTCTCACTGACTTACAGGTTC------TCCATGCTTTGTAC--AGTACCAGCATTATGTTAAATG-A-ATTCATTCA-----------------------------------------TACTGATCAATTCCTCACTTTGTATGAGTTACAGTTAATATGGTTCCGTGTAAAACAAGGACAGCCTGTATGTCTATTTTTAATCAAAGACCTGAATCGCTGACTACAGGGCATACTCATTAATTCAGACACCTCT---GACAGAAATATTTGC----------------TAGGACTAGGTTTGAAGGTG-ATCTTTAAAAATTAGAGCAACAAGTAATCAAAATGAAGATGATATTTCTT i calJac3.chr3 C 0 C 0 s mm10.chr5 49205557 468 + 151834684 tctgtgtatgtgtttgagaaagagagagaggtagagagagaaaaaaagagagagaagaGAGAGTTCTGACATACATGTGCAAGACTGTGTG-------TTT--ATAGAGTGTACAAAAACCAGAATTGTCAACATTATGAAATTATTAATCTCGATTGAGTGAAATAAAC----------CATTGT-------TTTTGCC--CATAGAGCTAGAGAGCATCTTTATTTTGCACAAAATGCAAGCACTTTGTTAATTGAA-ACTCCTTAA-----------------------------------------TA-----------CTTATTTTGCATGAGATCCAGTTACTATGGTGATGTGCCAAATACAAACTCTAATTTTGTCTGTATTCTATCAAAAAATAAAATGACTGACTACATGGAGTAGATATTAATTCAAATTACTCTGAACATAAGAACACTAGTAAACT-CTAAGTGAAATGAGACTAGTTATAAAATTG-ATATTTCATTTTTAGATGAGTAATTAGTTAAAATTATAGTTACAGTTCTT i mm10.chr5 I 113 C 0 s canFam3.chr3 3798250 411 - 91889043 -ATAGATTTG-GAAGATA---------------------------------------------------AATATAC-T-TAAAAATGTGTGTGTTTATTTTAAATCAGGCATAT---------------GAATACTTTCAGTTGGTCGACATCAATAGGATAAAATAGATAGAGAAGTTACATTTC-------ACACAGA--GCTACAGGTAG------TCCTCTCTTGGCAC--AACACCAGTACTATTTTAATTG-ACACTCACTCA-----------------------------------------TATT-ACCAATTCCTCATTTTGCATGAGTTTCAGCTAATATAGTCCTGTACAAAATAAAGATTGCT----TGTCTAttt----tcaaagattagagtaac-aactagagggcatactcattaattctgagtttcctagaggtaggaaattttgctaattggtaaataaaacaggactacatttgaaagtg-atcttgaaaaactaaagcaatTTATTATCAAAAGGAAGATAGTGCTTCtt i canFam3.chr3 C 0 I 44 a score=112708.000000 s hg38.chr4_KI270790v1_alt 95472 35 + 220246 AACAAGATATCCTCATGGAAAATAGAGAAAAGAGA s panTro4.chr4 21482023 35 + 193495092 AACAAGATATCCTCATGGAAAATAGAGAAAAGAGG i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21659203 35 + 198332218 AACAAGATATCCTCATGGAAAATAGAGAAAAGAGA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20271614 35 - 85365473 AACAAGATATCCTCATGGAAAATAGAGAAAAGAGA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16737795 35 + 184069350 AAGAAGATATCCTCATGGAAAATAGAGAAAAGAGA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20786799 35 + 189454096 AAGAAGATATCCTCATGGAAAATAGAGAAAAGAGA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16374848 35 + 178775436 AAGAAGATATCCTcatggaaaatagagaaaagaga i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19861326 35 - 48547382 AAGAAGATACCCTCATGGAAAATAGAGAAAAGAGA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21217764 33 - 190850796 AACACGATATCCTCATGAAAAATAGAGAAAAGA-- i calJac3.chr3 C 0 C 0 s mm10.chr5 49206025 35 + 151834684 AACAAGACATCTTCTCAGTAAGGAGGGGGGATAAA i mm10.chr5 C 0 I 1739 e canFam3.chr3 3798661 44 - 91889043 I a score=3360559.000000 s hg38.chr4_KI270790v1_alt 95507 1140 + 220246 AGAAGATTGCTTCCTTAAATTAGGGACACAGACTAGTGAGGTAAAAGAAAAGCAGAAAAATAATCTGTGAGTTATACTTGACTACAAACTGataggagagcaagaacatgtagcgagcaccctactatgtgctaagactgtgttaatctaagtacttttgtggttatcacatttaatactcacaaatgtttgtaagatatattttattaGGTGAATGTCTTGATGCTGCTGAAGATCGAATACTATCTGAATTGAAATATTATCTCATTACTACTATTCCTCATGCCACACCAGGAATATTCTTGTCATACCTACTC--TGATATTCTGGAAACAGGCAGAAACTGTTATATTTAGGAGATACTTCTCCTGCTACCTTAGGGATACTTCTCCTGCTGTCTTTAGATTATAAAACCATTTTGACTATGAACTACTTTTCAGTGGCAGGTTATAACAGGTCATGCCCTTCGGGCAATTtataagcttgctatggctactgtaacaaaacactacagagtgaatggataaaccagcagaaatttattttcacacagttctggaggctagacatccaaaatcaagatgtcagtggggtaggttacttctgcagactatgaggaatgatctattctagacctttctccttggcttgaagatggctaatcttcaccctttgtcttcacattgtcttccttctttacatgtctgtatccaaatttcatctccttatgaggacagcagtgatattggcttagggtccacactaatg------------------------------------------acctcattttaatttaactctgtaagtcccattaaacaaatatagtttca-tttgaggtactggaacgtattataatctttctttttgtgagggaggatgacacaatttagcccataacaCAGAAGAAAAACACAATCAAAATTCACATTAGGGATTTTAGCTCTAAGAAATTAAATATGTATATTAGAATACATAAAAACACCAATAAGAATACGAAGTCATTTGTGTAAATGAGTTtattcatacattttcatactgctacaaagaaaaacccgagactgggtaatttataaaagaaagaggtttaattgactcacttttctgcatgggtggggaggcctcaggaaacttacaaacatggtgaaaagggaaga s panTro4.chr4 21482058 1140 + 193495092 AGAAGATTGCTTCCTTAAATTAGGGACACagactagtgaggtaaaagaaaagcagaaaaataacctgtgagttatacttgactacaaactgataggagAACAAGAAcatgtagcgagcaccctactatgtgctaagactgtgttaatctaagtacttttgtggttatcacatttaatactcacaaatctttgtaagatatattttattaGGTGAATGTCTTGATGCTGCTGAAGATCGAATACTATCTGAATTGAAATATTGTCTCATTACTACTATTCCTCATGCCACACCAGGAATATTCTTGTCATACCTACTC--TGATATTCTGGAAACAGGCAGAAACTGTTATATTTAGGAGATACTTCTCCTGCTACCTTAGGGATACTTCTCCTGCTGTCTTTAGATTATAAAACCATTTTGACTATAAACTACTTTTCAGTGGCAGGTTATAACAGGTCACACCCTTAGGGCAATTtataagctttctatggctactgtaacaaaacactacagagtgaatggataaatcagcagaaatttattttcacacagttctggaggctagacatccaaaatcaaggtgtcagtgggataggttacttctgcagactatgaggaatgatctattctagacctttctccttggcttgaagatggctaatcttctccctttgtcttcacattgtcttccttctttacatgtctgtatccaaatttcatctccttatgaggacagcagtgatattggcttagggtccacactaatg------------------------------------------acctcattttaatttaactctgcaagtcccattaaacaaatatagttgca-tttgaggcactggaacgtattataatctttctttttgtgagggaggatgacacaattcagcccataacaCAGAGGAAAAGCACAATCAAAATTCACATTAGGGATTTTAGCTCTAAGAAATTAAATATGTATATTAGAATACATAAAAACACCAATAAGAATATGAAGTCATTTGTGTAAATGACTTtattcatacattttcatactgctacaaagaaaaacccgagactgggtaatttataaaagaaagaggtttaattgactcacttttctgcatgggtggggaggcctcaggaaacttacaaacatggtgaaaggggaaga i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21659238 1140 + 198332218 AGAAGATTGCTTCCTTAAATTAGGGACACAGACTAGTGAGGTAAAAGAAAAGCAGAAAAATTATCTGTGAGTTATACTTGACTACAAACTGACAGGAGAACAAGaacatgtagtgagcaccctactatgtgccaatactctgttaatctaagtactcttgtggttatcacatttaatactcacaaatctttttaagatatattttattaGGTGAATGTCTTGATGCTGCTGAAGATTGAACACTATCTGAATTGAAATATTATCTCATTTCTACTATTCCTCATGCCACACCAGGAATATTCTTGTCATACCTACTC--TGATATTCTGGAAACAGGCAGAAACTGTTATATTTAGGAGATACTTCTCCTGCTACCTTAGGGATACTTCTCCTGCTGTCTTTAGATTATAAAACCATTTTGACTATGAACTACTTTTCAGTGGCAGGTTATAACAGGTCACGCCCTTAGGGCAATTtataagcttgttatggctactataacaaaacactacagagtgaatggataaaccagcagaaatttattttcacacagttctggaggctagacatccaaaatcaaggtgtcggtggggtaggttacttctgcagactatgaggaatgatctattctagacctttctccttggcttgaagatggccaatcttttccctttgtcttcacattgtcttccttctttacatgtctgtatccaaatttcatctccttatgaggacagcagtgatattggcttagggtccacactaatg------------------------------------------acctcattttaatttaactctgtaagtcccattatacaaatatagttgca-tttgaggtactggaacatataataatctttctttttgtgagggaggatgacacaattcagcccataacaCAGAGGAAAAACACAATCAAAATTCACATTAGGGATTTTAGCTCTAAGAAATTAAATATGTATGTTAGAATACATAAAAACACCAATAAGAATATGAAGTCATTTGTGTAAATGAGTTtattcatacattttcatactgctacaaagaaaaacccgagactgggtaatttataaaagaaagaggtttaattgactcacttttctgcatgggtggggaggcctcaggaaacttacaaacatggtgaaaggggaaga i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20271649 1105 - 85365473 AGAAGATTGCTTCCAT-AATTAGgggcacagactagtgaggtaaaagaaaagcagaaaaataatctgtgagttatacttgactacaaactgaTGGGAGAACAAGAACATGTAg--------------tgtgctaatactgtgttaatctaagtactcttgtggttatcacatttaatactcacaaG--------------ATTTTATTAGGTGAATGTCTTGATGCTGCTGAAGATCGAATACTATCTGAATTGAAATATTATCTCATTTCTACTATTCCTCATGCCACACCAGGAATATTCTTGTCATACCTACTC--TGATATTCTGGAAACAGGCAGAAACTGTTATATTTAGGAGATACTTCTCCTACTACCTTAGGGATACTTCTCCTGCTATCTTTAGATTATAAAACCATTTTGACTACAAACTACTTTTCAGTGGCAGGTTATAACAGATCATGCCCTTAGGGCAATTtataagcttgctatggctactataacaaaacactacagactgaatggataaaccagcagaaatttattttcactcagttctggaggctagacatccaagatcaaggtgtcagtggggtaggttacttctgcagactatgcggaatgatctattctagatctttctccttggcttgaagatggccagttttctccctttgtcttcacattgtcttccttctttacatgtctgtatccaaatttcaactccttatgaggacagcagtgatattggcttagagttcacactaatg------------------------------------------acctcat-----tttaactctgtaagtgccattatataaatatagttgca-tttgaggtaccgaaacatacaataatctttctttttgtgagggaggatgacaaaattcagcccataacaCAGAGGGAAAATGCAATCAAAATTCACATTAGGGATTTTAGCTCTAAGAAATTAAATATGTATATTAGAATACATAAAAACACCAATAAGAATATGAAGTGATTTGTGTAAATGAGTTtattcgtacattttcatactgctacaaagaaaaaccctagactgggtaatttataaaagaaagaggtttaattgactcacagttctgcatgggtggagaggtctcagg-aatttacaaacatcgtgaaaggggaaga i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16737830 1140 + 184069350 TGAAGGTTTCTTCCTTAAATTAGGGACACAGACTAGTGAGGTAAAAGAACAGCAGAAAAATAATCTGTGAGTTCTACTTGATTACAAACTGATGGGAGAACACGAAcatgcagtgagcaccctactatgtgctaatactgtgttaatctaggtattcttgtggttaccacatataatactcacaaatctttgtaagatagattttattaGGTGAATGTCTTGATGCTGCTGAAGATTGAATACTATCTGAATTGAAATATTATCTCATTTCTACTATTCCTCATGCCACACCAGGAATATTCTTGTCATACCTACTC--TGATATTCTGGAATCAGGCAGAAACTGTTATATTTAGGAGATACTTCTCCTGCTATCTTAGGGATACTTCTCCTGCTGTCTTTAGATTATAAAACCATTTTGACTATGAACTACTTTTCAGTGGCAGGTTATAACTGGTCACACCCTTAGGGCAATTtataagcttgctatggctactataacaaaacactacagactgagtgaataaatcagcagaaatttattttcacatagttctggaggctagaagcccaagatcaaggtgtcagtgggataggttacttctgcagactatgaggaaggatctattccagacttttctccttggcttgaagatggtcagtcttctccctttgtcttcacattgttttccttatttacatgtctgtatccaaattttatcttcttatgaggagagcagtgatactggctgagggtccacactaatg------------------------------------------acttcaattcaatttaactctgtaagtcccattatacaaatatggttgca-tttgaggtactggaacatataataatctttctttttatgggggaggatgacacaattcagcccataacaCAGAGGAAAAACACAATCAAAATTCACATTAGGGATTTTAGCTCTAAGAAATTAAATACATATATCAGAATACATAAAAACACCAGTAAGAATATGAAGTCATTTGTGTAAATGAGtatattcatacattttcataccgctacaaagaaaaacccaagactggataatttataaaaggaagaggtttaattgactcacagttctgcattgctggtgaggcctcaggaaacttacaaacatggtgaaagggaaaga i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20786834 1140 + 189454096 TGAAGGTTTCTTCCTTAAATTAGGGACACAGACTAGTGAGGTAAAAGAACAGCAGAAAAATAATCTGTGAGTTCTACTTGATTACAAACTGATGGGAGAACACGAAcatgcagtgagcaccctactatgtgctaatactgtgttaatctaggtattcttgtagttatcacatataatactcacaaatctttgtaagatagattttattaGGTGAATGTCTTGATGCTGCTGAAGATTGAATACTATCTGAATTGAAATATTATCTCATTTCTACTATTCCTCATGCCACACCAGGAATATTCTTGTCATACCTACTC--TGATATTCTGGAATCAGGCAGAAACTGTTATATTTAGGAGATACTTCTCCTGCTATCTTAGGGATACTTCTCCTGCTGTCTTTAGATTATAAAACCATTTTGACTATGAACTACTTTTCAGTGGCAGGTTATAACAGGTCACACCCTTAGGGCAATTtataagcttgctatagctactataacaaaacactacagactgagtgaataaatcagcagaaatttattttcacatagttctggaggctagaagtccaagatcaaggtgtcagtgggataggttacttctgcagactatgaggaaggatctattccagacttttctccttggcttgaagatggtcagtcttctccctttgtcttcatattgttttccttatttacatgtctgtatccaaattttatcttcttatgaggagagcagtgatactggctgagggtccacactaatg------------------------------------------acttcaattcaatttaactctgtaagtcccattatacaaatatggttgca-tttgaggtactggaacatataataatctttctttttatgggggaggatgacacaattcagcccataacaCAGAGGAAAAACACAATCAAAATTCACATTAGGGATTTTAGCTCTAAGAAATTAAATACATATATCAGAATACATAAAAACACCAGTAAGAATATGAAGTCATTTGTGTAAATGAGtatattcatacattttcataccgctacaaagaaaaacccaagactggataatttataaaaggaagaggtttaattgactcacagttctgcattgctggtgaggcctcaggaaacttacaaacatggtgaaagggaaaga i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16374883 1140 + 178775436 tgaAGGTTTCTTCCTTAAATTAGGGACACAGACTAGTGAGGTAAAAGAACAGCAGAAAAATAATCTGTGAGTTCTACTTGATTACAAACTGATGGGAGAACACGAACATGTAGTGAGCACCCTACTATGTGCTAATACTGTGTTAATCTAGGTATTCTTGTGGTTATCACATATAATACTCACAAATCCTTGTAAGATAGATTTTATTAGGTGAATGTCTTGATGCTGCTGAAGATCGAATACTATCTGAATTGAAGTATTATCTCATTTCTACTATTCCTCATGCCACACCAGGAATATTCTTGTCAAACATACTC--TGATATTCTGGAATCAGGCAGAAACTGTTATATTTAGGAGATACTTCTCCTGCTATCTTAGGGATACTTCTCCTGCTGTCTTTAGATTATAAAACCATTCTGACTATGAACTACTTTTCAGTGGCAGGTTATAATAGGTCACACCCTTAGGGCAATTTATAAGCTTGCTAtggctactataacaaaacaCTACAGACTGAGTGAATAAatcagcagaaatttattttcacatagttctggaggctagaagtccaagatcaaggtgtcagtgggATAGGTTACTTCTGCAGACTATGAGGAAGGATCTATTCTAGACTTTTCTCCTTGGCTTGAAGATGGTCAGTCTTCTCCCTTTGTCTTCacattgttttccttatttacATGTCTGTATCCAAATTTTATCTTCTTATGAGGAGAGCAGTGATACTGGCTGAGGGTCCACACTAATG------------------------------------------ACTTCAATTCAATTTAACTCTGTAAGTCCCATTATACAAATATGGTTGCA-TTTGAGGTACTGGAACATataataatctttctttttatggGGGAGGatgacacaattcagcccataacacagAGGAAAAACACAATCAAAATTCACATTAGGGattttagctctaagaaattaaatacatatatcaGAATACATAAAAACACCAGTAAGAATATGAAGTCATTTGTGTAAATGAGTATATTCATACATTTTCATATCGCTACAAAGAAAAacccgagactggataatttataaaaggaagaggtttaattgactcacagttctgcattgctggtgaggcctcaggaaacttacaaacatggtgAAAGGGAAAGa i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19861361 1137 - 48547382 TGAAGGTTTCTTCCTTAAATTAGGGACACAGACTAGTGAGGTAAAAGAACAGCAGAAAAATAATCTGTGAGTTCTACTTGATTACAAACTGATGGGAGAACACGAAcatgtagtgagcaccctactatgtgctaatactgtgttaatctaggtattcttgtggttatcacatataatactcacaaatctttgtaagatagattttattaGGTGAATGTCTTGATGCTGCTGAAGATCGAATACTATCTGAATTGAAATATTATCTCATTTCTACTATTCCTCATGCCACACCAGGAATATTCTTGTCATACTTACTC--TGATATTCTGGAAACAGGCAGAAACTGTTATGTTTAGGAGATACTT---CTGCTATCTTAGGGATACTTCTCCTGCTGTCTTTAGATTACAAAACCATTTTGACTATGAACTACTTTTCAGTGGCAGGTTATAACAGGTCACACCCTTAGGGCAATTtataagcttgctatggctactataacaaaacactacagactgagtgaataaaccagcagaaatttattttcacatagttctggaggctagaagtccaagatcaaggtgtcagtgggataggttacttctgcagactatgaggaatgatctattccagacctttctccttggcttgaagatggccagtcttctccctttttcttcacattgttttccttatttacatgtctgtatccaaattttatcttcttaagaggagagcagtgatactggctgagggtccacactaatg------------------------------------------acttcaattcaatttaactctgtaagtcccattatacaaatatggttgca-tttgaggtactggaacgtataataatctttctttttatgggggaggatgacacaattcagcccataacaCAGAGGTAAAACACAATCAAAATTCACATTAGGGATTTTAGCTCTAAGAAATTAAATACATATATCAGAATACATAAAAACACCAGTAAGAATATGAAGTCATTTGTATAAATGAGtatattcatacattttcataccgctacaaagaaaaacccgagactggataattcataaaaggaagaggtttaattgactcacagttctgcattgctggtgaggcctcgggaaacttacaaacatggtgaaaggaaaaga i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21217797 1175 - 190850796 -GAAGATTGTTTCTTTAAATTATGGACACAGATTAGTGAGGTAAAAGAACAGCAGAAAAATAATCTATGAGTTATACTTGACTACAAACTAATGGGAGAACAAGAAcatgtagtgagcaccctattatgtgctaatactgtgttaatctaagtactcttttggctatcacacttaatactcacaaatctctgtaaggtagattttattaGGTAAATGTCT---TGCTGCTGAAGATCTAATAGTATCTGAATTGAAATATTATTTCATTTCTACCAATCTTCATGCCACACTGGGAATATACTTGTCAGACCTACTCTGTGATATTCCGAAAACAGGCAGAATCTGTTATATTTAGTAGATACTTCTCCTGCTGTTCTAGAGATGTTTTTCCTGCTATCTTTAGATTATAAAATCATTTTGATTATGAACTACTTTTCAGTGGCAAGTTATAACAAGTCATGCCCTTAGGGTAATTtattagcttgcaatgactactgtaacaaaacactgcagactgagtggctaaaccaacagaaatttattttcctacagttctggaggctagaagtccaagatcaaagtgtcagtgaggtaggttacttctgcagaccatgaggaatgatatattctagacctttctcc-tggcttgaagattgccaatcttctccctttgtcttcacattatcttccttctttatatgtctgtatccaaatttcatcttcttatgaggacatcagtgatattggcttagggttcacactaattttaatttaacacacctcattttaatttaactcatttaaccacacctcattttaatttaactctgtaagacccattatccaaatatagttgcattttgaggtactggaacatataataatctttctttttgtgggaaaggatgacacaattcagcacagaaGGCAGAGAAAAAAGACGATCAAAATTCACATTAGGGATTTTAGCTCTGAGAAATAAAATATGTATATTAGAATACAGAAAA----CAATAAGAACATAAAGTCATTTGTGGGCATGAGTATATGCAtccatttacacactgctacaaagaaatacccaagactgggtcatttataaaagaaagaggtttaattgactcacagttctgca-ggctggggaggcctcaggaaacttacaaacatggtggaaggggaaga i calJac3.chr3 C 0 C 0 e mm10.chr5 49206060 1739 + 151834684 I e canFam3.chr3 3798661 44 - 91889043 I a score=311751.000000 s hg38.chr4_KI270790v1_alt 96647 131 + 220246 ggcacatc----tttttttttttaattatactttaagctctggagtacatgtgcagaacgtgcaggtttgctacataggtatatatgtgccacggtgatttgctgcacccatcaactcatcatctacattagata s panTro4.chr4 21483198 131 + 193495092 ggcacatc----ttttttttttaaattatactttaagctctggagtacatgtgcagaacgtgcaggtttgttacataggtataaatgtgccatggtgatttgctgcacccatcaactcatcatctacattagata i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21660378 131 + 198332218 cgcacatc----ttttttttttaaattatactttaagctctggagtacatgtgcagaacatgcaggtttgttacataggtatacatgtgccatggtgatttgctgcacccatcaactcatcatctacattgaata i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20272754 131 - 85365473 ggcacatc----tttttttttttaattatactttaagctctggagtacatgtgcagaacatgcagatttgttacataggtatacatgtgccatggtgattcgctgcacccatcaactcatcatctacattagata i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16738970 134 + 184069350 ggTACATC-TTttttttttttttaattatactttaagctctggagtacatgtgcagaacgtgcaggtttgttacataggtatacatgtgccatggggatttactgcacccatcaactcatcatctgcattagata i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20787974 135 + 189454096 ggtacatctttttttttttttttaattatactttaagctctggagtacatgtgcagaacgtgcaggtttgttacataggtatacatgtgccatggggatttactgcacccatcaactcatcatctgcattagata i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16376023 133 + 178775436 ggtacatc--tttttttttttttaattatactttaagctctggagtacatgtgcagaacgtgcaggtttgttacataggtatacatgtgccatggggatttactgcacccatcaactcatcatctgcattagata i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19862498 134 - 48547382 ggcacatt-ctttttttttttttaattatactttaagctctggagtacatgtgcagaacgtgcgggtttgttacataggtatacatgtgccatggggatttgctgcacccatcaactcatcatctacattagcta i chlSab2.chr27 C 0 C 0 e mm10.chr5 49206060 1739 + 151834684 I e calJac3.chr3 21218972 0 - 190850796 C e canFam3.chr3 3798661 44 - 91889043 I a score=388709.000000 s hg38.chr4_KI270790v1_alt 96778 214 + 220246 tttctcctaatgctatccctcccctagacccccaccccctgacaggccccagtgtgtgatgttctcctccctgtgtccatgtgttctcattgttcacctcccacttatgagtgagaacatgtggtgtttggttttctgttcttttgttagtttgctgagaatgatagtttccagcttcttccatgtccctacaaaggacatgaactcatccttt s panTro4.chr4 21483329 214 + 193495092 tttctcctaatgctctccctcccctagacccccaccccctgacaggccccagtgtgtgatgttctcctccctgtgtccatgtgttctcattgttcacctcccacttatgagtgagaacatgtggtgtttggttttctgttcttttgttagtttgctgagaatgatagtttccagcttcttccatgtccctacaaaggacatgaactcatccttt i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21660509 214 + 198332218 tttctcctaatgctatccctcccctagccccccaccccctgacaggccccagtgtgtgatgttctcctccctgtatccatgtgttctcattgttcacctcccacttaagagtgagaacatgtggtgtttggttttctgttcttgtgttagtttgctgagaatgatagtttccagcttcttccatgtccctacaaaggacatgaattcatccttt i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20272885 214 - 85365473 tttctcctagtgctatccttcccctagccccccaccccctgacaggccctagtgtgtgacgttctcctccccgtgtccatgtgttctcattgttcacttcccatttatgagtgagaacatgtggtgtttggctttctgttcttatgttagtttgctgaaaatgatggtttccagcttcttccatgtccctacaaaggacatgaactcatccttt i nomLeu3.chr20 C 0 C 0 s macFas5.chr5 20788109 213 + 189454096 tttctcctaatgctatccctcccctagtcccccatcccc-gataggccccagtgtgtgatgttctcctccctgtgtccaggtgttctcattgttcagctcccacttatgagtgagaacatgtggtgttcggttttctgttcttgtgttagtttgctgagaatgatggtttccagcttcttccatgtccctacaaaggacatgaactcatccttt i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16376156 213 + 178775436 tttctcctaatgctatccctcccctagtcccccaccccc-gataggccccagtgtgtgatgttctcctccctgtgtccaggtgttctcattgttcagctcccacttatgagtgagaacatgtggtgttcggttttctgttcttgtgttagtttgctgagaatgttggtttccagcttcatccatgtccctacaaaggacatgaactcatccttt i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19862632 213 - 48547382 tttctcctaatgctaactctcccctagtcccccaccccc-gataggccccagtgtgtgatgttctcctccctgtgtccatgtgttctcattgttcagctcccacttatgagggagaacatgcggtgtttggttttctgttcttgtgttagtttgctgagaatgatggtttccagcttcttccatgtccctacaaaggacatgaactcatccttt i chlSab2.chr27 C 0 C 0 e mm10.chr5 49206060 1739 + 151834684 I e rheMac3.chr5 16739104 0 + 184069350 C e calJac3.chr3 21218972 0 - 190850796 C e canFam3.chr3 3798661 44 - 91889043 I a score=378760.000000 s hg38.chr4_KI270790v1_alt 96992 160 + 220246 tttatggctgcatagtattccatggtgtatatgtgtcacattttctttatccagtctaccattgatgggcatttgggttggttccaagactttgctattgtgaacagtgctgcaataaacattatgtgtgcatgtgtctttatattagatgacagcaggt s panTro4.chr4 21483543 159 + 193495092 tt-atggctgcatagtattccatggtgtatatgtgtcacattttctttatccagtctatcattgatgggcatttgggttggttccaagactttgctattgtgaacagtgctgcaataaacattatgtgtgcatgtgtctttatattagatgacagcaggt i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21660723 159 + 198332218 tttatggctgcatagtattccatgatgtatatgtgacacattttctttatccagtctatcattgatgggcatttgggttggttccaaaactttgctattgtgaacagtgccacaataaata-tatgtgtgcatgtgtctttataatagatgacagcaggt i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20273099 159 - 85365473 tttatggctgcatagtattccatggtgtatatgtgtcacattttctttatccagtccatcattgatgggcatttgggttggttccaagcctttgctattgtgaacagtgctgcatgaaaca-tatgtgtgcatgtgtctttatattagatgacagcagac i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16739104 159 + 184069350 tttatggctgcatagtattccatggtgtatatgtgacacattttctttatccagtctatcattgatgggcatttgggttggttccaagaccctgctattgtgaacagtgccacaataaaca-tgtgtgtacatgtgtttttatattggaTGACAGCAGGT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20788322 159 + 189454096 tttatggctgcatagtattccatggtgtatatgtgacacattttctttatccagtctatcattgatgggcatttgggttggttccaagaccctgctattgtgaacagtgccacaataaaca-tgtgtgtacatgtgtttttatattggatgacagcaggt i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16376369 159 + 178775436 tttatggctgcatagtattccatggtgtatatgtgacacattttctttatccagtctatcatttatgggcatttgggttggttccaagaccctgctattgtgaacagtgccacaataaaca-tgtgtgtgcatgtgtttttatattggATGACAGCAGGT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19862845 159 - 48547382 tttatggctgcatagtattccatggtgtatatgtgacacgttttctttatccagtctatcattgatgggcatttgggttggttccaagaccctgctattgtgaacagtgccacaataaaca-tgtgtgtgcatgtgtttttatattggatgacagcaggt i chlSab2.chr27 C 0 C 0 e mm10.chr5 49206060 1739 + 151834684 I e calJac3.chr3 21218972 0 - 190850796 C e canFam3.chr3 3798661 44 - 91889043 I a score=571928.000000 s hg38.chr4_KI270790v1_alt 97152 201 + 220246 gagagagaga-agaagaggagtgaagggagaagagccccttataaaaccatcagatcttatgagaactcactcaccatctcaagaacagcat--gggggaagccacctccatgatccaatcacctcccatcaagtctctccctagatacatggggattatggagattacaattcagtatgagatttgggtggggacacagccaa s panTro4.chr4 21483702 200 + 193495092 gagagaaaga-agaagaggagtgaagggagaagagccccttataaaaccatcagatcttatgagaactcactcaccatctcaagaacagcat--gggggaagccacctccatgatccaatcacctcccatcaagtctctccctagatacatggggattatggagattacaattcaatatgagatttgggtggg-acacagccaa i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21660882 197 + 198332218 gag----aga-agaagaggagtgaagggagaagagccccttataaaaccatcagatcttatgagaactcactcactatttcaagaacagcat--gggggaagccacctccatgatccaatcacctcccaccaagtctcttcctagatacatggggattatggagactacaattcaatatgagatttgggtagggacacagccaa i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20273258 201 - 85365473 gagagacaga-agaagaggagtgaagggagaagagccccttataaaaccatcagatcttaggagaactcactcactatctcaagaacagcat--gggggaagccacctccatgatccaattacctcccaccaagtctctccctagatacatggggattatggagattgcaattcaatatgagatttgggtggggacacagccaa i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16739263 202 + 184069350 GAgacagaga-agaagagaagtgaagggagaagagccccttataaaaccatcagatcttatgagaactcactcactttctcaagaacagcat-ggggggaagccacctccatgatccaatcacctaccagcaagtctctccctagatacatggggattatggagattacaatttaagatgagatttgggtggggacacagccaa i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20788481 203 + 189454096 gagacagaga-agaagaaaagtgaagggagaagagccccttataaaaccatcagatcttatgagaactcactcactttctcaagaacagcatgggggggaagccacctccatgatccaatcacctaccaccaagtctctccctagatacatggggattatggagattacaatttaagacaagatttgggtggggacacagccaa i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16376528 202 + 178775436 gagacagaga-agaagagaagtgaagggagaagagacacttataaaaccatcagatcttacgagaactcactcactttctcaagaacagcat-ggggggaagccacctccatgatccaatcaccgaCCACCAAGTCTCTCCCTagatacatggggattatagagattacaatttaagacgagatttgggtggggacacagccaa i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19863004 202 - 48547382 gagagagaga-agaagagaagtgaagggagaagagccccttataaaaccatcagatcttacgagaactcactcactctctcaagaacagcat-ggggggaagccacctccatgatccaatcacctcccaccaagtctctccctagatacatggggattatggagatgacaatttaagatgagatttgggtggggacacagccaa i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21218972 191 - 190850796 gagagaaagagagaagaagagtgaatggaggagagccccttat-agaccatcagatcttatgagaactaactcactatctcaagaatagcat--gggagaagccatttccaagatc----------ccaccaagtcactccctagacacatggggataaaaaagatagtaattcaagatgagatttgggtaggggcacagccaa i calJac3.chr3 C 0 C 0 e mm10.chr5 49206060 1739 + 151834684 I e canFam3.chr3 3798661 44 - 91889043 I a score=1948426.000000 s hg38.chr4_KI270790v1_alt 97353 669 + 220246 atcatatcaGTGAGCAATTAAGGAATTAACAGTGTCGAATCTTGGT-TTGTTAACATTGATGAAGACAAATATATAGCCACCAATATCCACTCTATCTCTTCACCTGGTTTAAGgt---ttttttgtttgtttg--tttgtttgtttttgtt-----------tttgtttttttCCTTTCATCATGGCAAGAGGTGCTTTAACTCTTCATTCTGTAA-TCCCATGAACAGCTATACAGATGTACCATACATTTTTTGGAGGGGTGGGGGATAACATTCTTCAATGTCACTAGGTTTTTGTAGGACCAACTCAAGCCGGCAGGTATAGTTAGAGAGACGGAAAGGT----ACAAGACCAACTATGGAAGAATCCAATGCCTCCAAGCATTACATGTTAGGATAAAGATCAGGATCACTGTTTGCATTCTCAGTAAGATAAACTTAGAGAAACTGCATGTTTTCCCTTTTCTCAATGATTTAACTTTTTCTTAGTTACGAGACAAACTTTAGAACAGCCAATAATCCATTAGAGTGAAGACATAATTGTCTTTTTAATAACAATGCCTCAAAGTGTGGGATATACGCCTGTCAACTCAGAGTTAGAATTGAATGTTTGACTTTCATTTTATTTATGTT----GTAGAAAAAAAGATTGA--TTTTTTTTAAAAAA---AGGAGGTTTTTCTGTTTTATTTCA s panTro4.chr4 21483902 668 + 193495092 atcatatcaGTGAGCAATTAAGGAATTAACAGTGTCACATCTTGGT-TTGTTAACATTGATGAAGACAAATATACAGCCACCGATATCAACTCTATCTCTTCACCTGGTTTAAGgt---ttttt-gtttgtttg--tttgtttgtttttgtt-----------tttgtttttttCCTTTCATCATGGCAAGAGGTGCTTCAACTCTTCATTCTGTAA-TCCCATGAACAGCTATACAGATGTACCATACATTTTTTGGAGGGGTGGGGGATAACATTCTTCAATGTCACTAGGCTTTTGTAGGACCAACTCAAGCCGGCAGGTATAGTTAGAGAGACGGAAGGGT----ACAAGATCAACCATGGAAGAATCCAATGCCTCCATGCATTACATGTTAGGATAAAGATCAGGATCACTGTTTGCATTCTCAGTAAGATAAACTTAGAGAAACTGCATGTTTTCCCTTTTCTCAATGATTTAACTTTTTCTTAGTTATGAGACAAACTTTAGAACAGCCAATAATCCATTAGAGTGAAGACATAATTGTCTTTTTAATAACAATGCCTCAAAGTGTGGGATATACGCCTGTCAACTCAGAGTTAGAATTGAATGTTCGACTTTCATTTTATTTATGTT----GTAGAAAAAAAGATTGA--TTTTTTTTAAAAAA---AGGAGGTTTTTCTGTTTTATTTCA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21661079 679 + 198332218 atcatatcaGTGAGCAATTAGGGAATTAACAGTGTCACATCTTGGT-TTGTTAACATTGATGAAGACAAATATATAGCCACCAATATCAACTCTATCTCTTCACCTGGATTAAGgt---ttttt-ttgtttttc--tttgtttgtttttgttttttgtagttgtttttttttttCCTTTCATCATGGCGAGAGGTGCTTTAACTCTTCATTCTGTAA-TCCCACGAACAGCTATACAGATGTACCACACCTTTTTTGGAGGGGTGGGGGATAACATTGTTCAATGTCACTAGGCTTTTGTTGGACCAACTCAAGCCTGGAGGTATGGTTAGAAAGACAGAAAGGT----ACAAGATCAACCATGGAAGAATCCAATGCCTCCAAGCATTACATGTTAGGATAAAGATCAGAATCACTGTTTGCATTCTCAGTAAGATAAACTTAGAGAAAATGCCTGTTTTCCCCTTTCTCAGTGATTTAACTTTTTCTTAGTTATGAGAGAGACTTTAGAACAGCCAATAATCCACTAGAGTGAAGACATGATTGTCTTTTTAATAACAATGCCTCAAAGTGTAGGATATACGACTGTCAACTCAGAGTTCGAATTGAATGTTCCACTTTCATTTTATTTACGTTGT-AGTAGAAAAAAAGATTGA--CTTTTTT---AAAA---AGGAGGTTTTTCTGTTTTATTTCA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20273459 651 - 85365473 atcatatcaGTGAGCAGTTAAGGAATTAACAGTGTCACATCTTGGT-TTGTTAACATTGATGAAGACAAATATATAGCCACCAATATCAACTCTATCTCTTCACCTGGTTTAAGGt---ttttt---------------gtttgtttttgtt-----------tttgtttttttCCTTTCATCATGGCAAGAGGTGTTTTAACTCTTCATTCTGTAA-TCCCATGAACAGCTATACAGATGTACCATACATTTTTCGGAGGGGTGGGGGATAACATTCTTCAATGTCACTAGGCTTTTGTTGGATCAACTCAAGCCTGCTGGTATAGTTAGAGAGACGGAAGGGT----ACAAGATCAAC-ATGGAAGAATTCAATGCCTCCAAGCATTACATGTTAGGATAAAGATCAAGATCACTGTTTGCATTCTCAGTAAGATAAACTTAGAGAAACTGCATGTTTTCCCTTTTCTCAATGATTTAACTTTTTCTTAGTTATGAGACAAACTTTAGAACAGCCAATAATCCATTAGAGTGAAGACATTATTGTCTTTTTAATAACAATGCCTGAAAGTATAGGATATACGCCTGTCAACTCAGAGTTAGAATTGAATGTTCTACTTTCATTTTATTTATGTTGT-AGTAGAAAAAGAGATTGA--TTTTTTTT--AAAA---AGGAGGTTTTTCTG-----TTTAA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16739465 655 + 184069350 atcgtatcaGTGAGTAATTAAGGAATTAACAGTGTCACGTCTTGGT-TTGTTAACATTGATGAAGACAAATATATAGCCCCCAATATCAACTCTATCTCTTCACCTGGTTTAAGGG---TTTTT------TTTG--TTTGCTTG-------------------TTTGTTTTTTCCCTTTCATCATGGCGAGAGGTGCTTTCACTCTTCATTCTGTAA-TCCCATGAACAGCTATACAGACGTACCATACAGTTTTTGGAGGGGTGGGGGATAACATTCTTCAATGTCACTAGGCTTTTGTTGGACCAACTCAAGCCTGGAGGTATAGTTAGAGAGACAGAAGGGT----ACAAGATCAACCATGGAAGAATCCAATGCCTCCAAGCATTACATGTTAAGATAAAGATTAGGATCAC----TGCATTCTCAGTAAGATGAACTTAGAGAAACTGCATGTTTTCCCTTTTCTCAATGGTTTAACTTTTTCTTAGTTATGAGACAGACTTTAGAACAGCCAATAACCCATTAAAGTGAAGACATTATTGCCTTTTTAATAACAATGCCTCAAAGTGTAGGATATACGCCTGTCAACTCAGAGTTAGAATTGAATGTTCCACTTTCATTTTATTTATGTTGT-AGTAGGAAAAAAGATTGA-TTTTTTTTTAGAAGA---AGGAGGTTTTTCTGTTTTATTTCA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20788684 656 + 189454096 atcgtatcaGTGAGTAATTAAGGAATTAACAGTGTCACGTCTTGGT-TTGTTAACATTGATGAAGACAAATATATAGCCCCCAATATCAACTCTATCTCTTCACCTGGTTTAAGGG---Ttttt------tttg--tttgcttg-------------------tttgttttttCCCTTTCATCATGGCGAGAGGTGCTTTCACTCTTCATTCTGTAA-TCCCATGAACAGCTATACAGACGTACCATACAGTTTTTGGAGGGGTGGGGGATAACATTCTTCAATGTCACTAGGCTTTTGTTGGACCAACTCAAGCCTGGAGGTATAGTTAGCGAGACAGAAGGGT----ACAAGATCAACCATGGAAGAATCCAATGCCTCCAAGCATTACATGTTAAGATAAAGATTAGGATCAC----TGCATTCTCAGTAAGATGAACTTAGAGAAACTGCATGTTTTCCCTTTTCTCAATGGTTTAACTTTTTCTTAGTTATGAGACAGACTTTAGAACAGCCAATAACCCATTAAAGTGAAGACATTATTGCCTTTTTAATAACAATGCCTCAAAGTGTAGGATATACGCCTGTCAACTCAGAGTTAGAATTGAATGTTCCACTTTCATTTTATTTATGTTGT-AGTAGGAAAAAAGATTGATTTTTTTTTTAGAAGA---AGGAGGTTTTTCTGTTTTATTTCA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16376730 657 + 178775436 attgTATCAGTGAGTAATTAAGGAATTAACAGTGTCACGCCTTGGT-TTGTTAACATTGATGAAGACAAATATATAGCCCCCAATATCAACTCTATCTCTTCACCGGgtttaaggg---ttttt------tttg--tttgcttg-------------------tttgttttttccctttcatcATGGCGAGAGGTGCTTTCACTCTTCATTCTGTAA-TCCCATGAACAGCTATACAGACGTACCATACAGTTTTTGGAGGGGTGGGGGATAACATTCTTCAGTGTCACTAGGCTTTTGTTGGACCAACTCAAGCCTGGAGGTATAGTTAGAGAGACAGAAGGGT----ACAAGATCAACCATGGAAGAATCCAATGCCTCCAAGCATTACATGTTAAGATAAAGATTAGGATCACTGTTTGCATTCTCAGTAAGATAAACTTAGAGAAACTGcatgttttcccttttctcaatGGTTTAACTTTTTCTTAGTTATGAGACAGACTTTAGAACAGCCAATAACCCATTAAAGTGAAGACATTATTGCCTTTTTAATAACAATGCCTCAAAGTGTAGGATATACGCCTGTCAACTCAGAGTTAGAATTGAATGttccactttcattttatttatgttgt-agTAGGaaaaaagattga---tttttttagaaaa---aggaggtttttctgttttatttca i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19863206 662 - 48547382 atcatatcaGTGAGCAATTAAGGAATTAACAGTGTCATGCCTTGGT-TTGTTAACATTGATGAAGACAAATATATAGCCACCAATATCAACTCTATCTCTTCACCTGGTTTAAGGgtttttttt------tttg--tttgcttg-------------------tttgttttttCCCTTTCATCATGGCGAGAGGTGCTTTCACTCTTCATTCTGTAA-TCCCATGAACAGCTATACACACGTACCATACATTTTTTGGAGGGGTGGGGGATAACATTCTTCAATGTCACTAGGC-TTTGTTGGACCAACTCAAGCCTGGAGGTATAGTTAGAGAGACTGAAGGGT----ACGAGATCAACCATGGAAGAATCCAATGCCTCCAAGCGTTACATGTTAAGATAAAGATCAGGTTCACTGTTTGCATTCTCAGTAAGATAAACTTAGAGAAACTGCATGTTTTCCCTTTTCTCAATGATTTAACTTTTTCTTAGTTATGAGACAGACTTTAGAACAGCCAATAACCCATTAAAGTGAAGACATTATTGCCTTTTTAATAACAATGCCTCAAAGTATAGGATATACGCCTGTCAATTCAGAGTTAGAATGGAATGTTCCACTTTCATTTTATTTATGTTGT-AGTAGAAAAAAAGATTGATTTTTTTTTTAGAAAA---AGGAGGTTTTTCTGTTTTATTTCA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21219163 643 - 190850796 attatatcaATGAGAAATTAAGGAATTACCAGTATCCCATCTTGGT-TTGTCAACATTGATGAAGACAAATATACAGCCACCAGTATCAACTCTATCTCTTCACCTGGTTTGAGGt---attta------ttta--tttattta-------------------tttatttT---CCTCTCATCATGTTGA----TGATTTAATTCTTCATTCTGCAA-CCCCATGAACAGTTACACAGATTTACCATACATTTTCCTGAGGCGTGGTGAATAACATTCTTCAATGTCACTAGGCTTTTATTGGGCCAACTCAAGCCTGAAGGTATAGTTAGAAAGAGGGAAGGGA----ACAAGATCAACCATAAAAGAAACCAATGCCTCCAAGCATTACACGTTAAGATAAAGATTAGGATCACTGTCTGCATTTTCAGTAAGATAAACTTAGAGAAACTGCATGTTTTCCTTTTTTTCAATGACTTAACTTTTTCTTA-TTATGAGACAGACTTTACAACAGCCAAT---------GAGTGGAGACAGTATTGCATTTTTAATAGCAATGCCTCAAAGTGTAGGATATATGCCTGTCAACTCAGAGTTAGAATTGGATGTTTTACTTTCATTCTATTTATGTTAT-AGGAGCAAAA-AGATTGA--TTTTTTAAAATAAATCTAGGAGGTTTTTCTGTTTTGTTTCA i calJac3.chr3 C 0 C 0 s mm10.chr5 49207799 624 + 151834684 ATTATGCAAATGAATAATCATAGGGTTAACTATGCCCTGTATTTGTATTTCTATTGCTACTAAATAAGAATACATAGTCTCTGATTTCAACTCTAAATCGTAATCTGGTTTAAGAT---ACAGT------TTTAATTTTGTTTAGGTGCTGT-----------TCTGGTTTTTGTCTTTTAT---------------------TCTTACTTTTGTAAGCCCCAAGAACAGCTACTGGGATGTTCAGTACTTATTTCAA------GAGAAAAATTATTCTTCACTATTA-TGAGCTCCTTTTTGATCAATTCCTGCCTACAGTTGTAACTTAGGAGGCTGAGGGGAAATGAAGAAATGAAGAATGGGAGACCCAAAGGCCTCCAAGTGCTACAC-TGAAAATAAAGATCAGCATT-TAGTTTACTTTATCAGCAA-ACAGGCAGACAGAAATTGGATGTTTTACATTTTCTTAATGGGCTGTCCTTCCCTTACTTATTATATA-----------ATCAAGTGGCCCATTAGTATGGTGCCATTGTTGCC---TTAATGATAGCGCCTAAACATGTGAACAGCAAGGCAATAATTTCACAGTAAGAGGTGAACACTCTA---TACTTTAATTTATTTTGTCAGTGGACAA--AGATTTA---TTTTTTAAAGCTA---CCAAGGTTTTTGTGGCTTGCTCTT i mm10.chr5 I 1739 C 0 e canFam3.chr3 3798661 44 - 91889043 I a score=519231.000000 s hg38.chr4_KI270790v1_alt 98022 141 + 220246 TTTTAGG--CTGAAATTGGTTGTCAGAATACAGCATCACTGAAATATTATGTGCATTGAACAAATGGAGCTGGGTTGCATTCCACAGTATG----CCACCAAAGTG-AAAAGAAACAAAGTTTTTGTATAGAAAACTGGCATGTTAAT s panTro4.chr4 21484570 141 + 193495092 TTTTAGG--CTGAAATTGGTTGTCAGAATACAGCATCACTGAAATATTATGTGCATTGAACAAATGGAGCTGGGTTGCATTCCACAGTATG----CCACCAAAGTG-AAAAGAAACAAAGTTTTTGTATAGAAAACTGGCATGTTAAT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21661758 141 + 198332218 TTTTAGG--CTAAAATTGGTTGTCAGAATACAGCATCATTGAAATATTATGTGTACTGAACAAATGGAGCTGGGTTGCATTCCATAGTATG----CCACCAAAGTG-AAAAGAAACAAAGTTTTTGTATAGAAAACTGGCATGTTAAT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20274110 138 - 85365473 TTTTAGG--CTGAAATTGGTTGTCAGAATACAGCATCATTGAAATATTATGTGCATTGAACAAATGGAGCTGGGTTGCATTCCATAGTA-------CACCAAAGTG-AAAAGAAACAAAGTTTTTGTATAGAAAACTGGCATGCTAAT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16740120 142 + 184069350 TTTTCGG--CTGAAATTGGTTGTTAGAATACAGCATCATTGAAATATTATGTGCACTGAACAAATGGAGCTGGGTTGCATTCCATAGTATG----CCATCAAAGTGAAAAAGAAACAAAGTTTTTGTATAGAAAACTGGGATGTTAAT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20789340 142 + 189454096 TTTTCGG--CTGAAATTGGTTGTTAGAATACAGCATCATTGAAATATTATGTGCACTGAACAAATGGAGCTGGGTTGCATTCCATAGTATG----CCATCAAAGTGAAAAAGAAACAAAGTTTTTGTATAGAAAACTGGGATGTTAAT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16377387 142 + 178775436 ttttcag--ctgAAATTGGTTGTTAGAATACAGCATCATTGAAATATTATGTGCACTGAACAAATGGAGCTGGGTTGCATTCCACAGTATG----CCatcaaagtgaaaaagaaacaaagtttttgTATAGAAAACTGGGATGTTAAT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19863868 138 - 48547382 TTTTTGG--CTGAAA----TTGTTAGAATACAGCATCATTGAAATGTTATGTGCACTGAACAAATGGAGCTGGGTTGCATTACATAGTATG----CCATCAAAATGAAAAAGAAAGAAAGTTTTTGTATAGAAAACTGGGATGTTAAT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21219806 142 - 190850796 TTTTAGG--CTGAAATTGGTTGTCAGAACACAGCATTATTGAAATATGATGTGCACTGAACAAATGGAGCAGGCTTGCATTCCATAGTATG----CCACTAAAGTGAAAAAGAAACAAAGTTTTTGTACAGAAAGCTGGCATGTTAAT i calJac3.chr3 C 0 C 0 s mm10.chr5 49208423 144 + 151834684 GTTTAGGGCCTGAAATTGGTTGTCAGGAGTAAGCAGGGCTGAAATATTACATGTACTGAACAAATGGAACAAGGTGGTATTCTCTAGGATA----TCTTTAATGTGGAAGGAAGACAAAGTTTTTATAGAGAAAGCTGGCATGATAAT i mm10.chr5 C 0 C 0 s canFam3.chr3 3798705 145 - 91889043 ttTTAGC--CTAAAGTTGGCTTTCAGGAT-TGGCTTATTTGAAATACTTTGCGCAGGAAATGAATGGAACTGGGCTGTATTACACAGTTTGGGGACACCAAAAGTGAAAACAAAACAATATTTTTATATAGAAAAACACCATACTGAT i canFam3.chr3 I 44 C 0 a score=9628.000000 s hg38.chr4_KI270790v1_alt 98163 3 + 220246 AAC s panTro4.chr4 21484711 3 + 193495092 AAC i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21661899 3 + 198332218 AAT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20274248 3 - 85365473 AAC i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16740262 3 + 184069350 AAC i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20789482 3 + 189454096 AAC i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16377529 3 + 178775436 AAC i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19864006 3 - 48547382 AAC i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21219948 3 - 190850796 AAG i calJac3.chr3 C 0 C 0 s canFam3.chr3 3798850 3 - 91889043 AAC i canFam3.chr3 C 0 C 0 e mm10.chr5 49208567 0 + 151834684 C a score=375403.000000 s hg38.chr4_KI270790v1_alt 98166 122 + 220246 GTCACACTcagtggcacatgcctgtagtccaatatactcaggaggctgaggcttggaaatcacttgagcccagaagtttgaaactagtctgggtaacatagcaagaatccatctcaaaagaa s panTro4.chr4 21484714 122 + 193495092 ATCACACTcaatggcacatgcctgtagtccaagctactcaggaggctgaggcttggaaatcacttgagcccagaagtttgaaactagtctgggcaacatagcaagattccatctcaaaagaa i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21661902 122 + 198332218 ATCACACTcggtggcacatgcctgtagtcccagctactcaggaggctgaggcttgggaatcacgtgagcccagaagtttgaaactagtctgggcaacatagcaagactccatctcaaaagaa i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20274251 122 - 85365473 ATCACACTTggtggcacacgcctgtagtcccagctactcaggaggctgaggcttggaaatcacctgagcccagaagtttgaaactagtctgggcaacatagcaagactccatctcaaaagaa i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16740265 122 + 184069350 ATCACACTcggtggcagatgcctgtagtcccagctactcaggaggctgaggctggggaatcacttgagcccagaagtttgaaactagtctgggcaatatagcaagactccatctcaaaagaa i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20789485 122 + 189454096 ATCACACTcggtggcagatgcctgtagtcccagctactcaggaggctgaggctggggaatcacttgagcccagaagtttgaaactagtctgggcaatatagcaagactccatctcaaaagaa i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16377532 122 + 178775436 ATCACACtcggtggcagatgcctgtagtcccagctactcaggaggctgaggctggggaatcacttgagcccagaagtttgaaactagtctgggcaatatagcaagactccatctcaaaagaa i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19864009 122 - 48547382 ATCACACTcaatggcagatgcctatagtcccagctactcaggaggctgaggctggggaatcacttgagcccagaagtttgaaactagtctgggcaatatagcaagactccatctcaaaagaa i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21219951 122 - 190850796 ATTATgcctggtggcacatgcctgtagtccctgctactcaggaggctgaggttgggaaatcacttgagcccagaagtttgacactagtctgggcaatatagcaagactccatctcaaaagaa i calJac3.chr3 C 0 C 0 e mm10.chr5 49208567 0 + 151834684 C e canFam3.chr3 3798853 0 - 91889043 C a score=3561794.000000 s hg38.chr4_KI270790v1_alt 98288 1001 + 220246 aTTGCACTGACTGGGGCTGAACCCTCAAGTCATTGAATCATGGAATTTTAAAGGAGAAGTCTGGCTTTTTCAGTTGTCTGGAGTGGATACTTAATTTAA-TTAAAGAGATGGAATGCATTTGATGAAAACAATTAAGCCACATTGGCATA-CTCTACATTGGCATCTAATATGATACGGCTATTTAATAAAAAGCT-AG--TATTCTGTTTGACAGATCAATTATTCATTAAATAGATGGGGCAGAAATGGACACGCAAAATCAAAGCTGATTAATTC--AGCAAAATCTTCAATAATACTGTCACCTTTAATCCAAGCCAATGGCTTCCAGCACAGCAG----GCAGCTTgatagagggtaaagtaatcacaatgca---------atgtgtt--aagtgcaagttataagaagcactatgtaaagagtactatgcaaaaacagaggagttgcaccctgacttggggatatcagaaaaatcttccttttaatagaagtaatatcattcttagttttaat------agatgTCAGGCAAAGAAT-----------------------GCAT--AAGTAGGCCGTTCAAAGGTATGTAGAGAGAAAAAGGCCCTGTTCATATTCTGAG-ACCCTGGTTTCATCAGTCTAATCTTGAGTA-CTGTTGGATCAGCAGCCACTCCACCAAGTTGGAACATGAGGGAGTAATTGATATTTCTCCCATAATCCAG-------TGTATTCATtatggtat-actgttgcaatcatgctcccaacatgagccag-cctcct-acacccatgcccttggacagcctactaccacattcaatagggctgatatgtgttaaccaataggacattgtagaaatggcaccatgtgtcatcagaggctgggttatcaaagaaattttagcttctgccttgtttgttctcttggttcagtctctg---------tg---------ggccaccatgcatgaggacattcaagcagccttatggagcagttt-acatggagaaaaactaaggcctcctgccaacagccagcacca----actggccatataaatgaactac-----------------cttga s panTro4.chr4 21484836 1001 + 193495092 aTTGCACTGACTGGGGCTGAACCCTCAAGTCACTGAATCATGGAATTTTAAAGGAGAAGTCTGGCTTTTTCAGTTGTCTGGAGTGGATACTTAATTTAA-TTAAAGAGACGGAATGCATTTGATGAAAACAATTAAGCCACATTGGCATA-CTCTACATTGGCATCTAATATGATATGGCTATTTAATAAAAAGCT-AG--TATTCTGTTTGACAGATCAATTATTCATTAAATAGATGGGGCAGAAATGGACACGCAAAATCAAAGCTGATTAATTC--AGCAAAATCTTCAATAATACTGTCACTTTTAATCCAAGCCAATGGCTTCCAGCACAGCAG----GCAGCTTGATAGAGGGCAAAGTaatcacaatgca---------atgtgtt--aagtgcaagttataagaagcactatgtaaagagtactatgcaaaaacagaggagttgcaccctgacttggggatatcagaaaaatcttccttttaatagaagtaatatcattcttagttttaat------agatgTCAGGCAAAGAAC-----------------------GCAT--AAGTAGGCCGTTCAAAGGTATGTAGACAGAAAAAGGCCCTGTTCATATTCTGAG-ACCCTGGTTTCATCAGTCTAATCTTGAGTA-CTGTTGGATCAGCAGCCACTCCACCAAGTTGGAAAATGAGGGAGTAATTGATATTTCTCCCATAATCCAG-------TGTATTCATtatggtat-actgttgcaatcatgctcccaacatgagccag-tctctt-acacccatgcccttggacagcctactaccacattcaatagggctgatatgtgttaaccaacaggacattgtagaaatggcaccatgtgtcatcagagtttgggttatcaaagaaattttagcttctgccttgtttgttctcttggttcagtctctg---------tg---------ggccaccacgcatgaggacattcaagcagccttatggagcagttc-acatggagagaaaccaaggcctcctgccgacagctagcacca----actggccatataaatgaactac-----------------cttga i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21662024 1000 + 198332218 aTTGCACTTACTGGGGCTGAACCCTCAAGTCATTGAATCATGGAATTTTAAAGGAGAAGTCTGGCTTTTTCAGTTGTCTGGAGTGGATACTTAATTTAA-TTAAAGAGACGGAATACGTTTGACGAAAACAATTAAGCTACATTGGCATA-CTCTACATTGGCATCTAATATGATATGGCTATTTAATAAAAAGCT-AG--TATTCTGTTTGACAGATCAGTTATTCATTAAATAGATGGGGCAGAAATGGACATGCAAAATCGAAGCTGATTAATGC--AGCAAAATATTCAATAATACTGTCACTTTTAATCCAAGCCAATGGCTTCAAGCACAGCAG----GCAGCTTGATAGAGGGCAAAGTaatcacaatgca---------atgtgtt--aagtgcaagttataataagcactatgtaaagagtattatgcaaaaacagaggagttgtaccctgacttgcagatatcagaaaaatcttccttttaatagaggtaatatcattcttagttttaat------agatgTCAGACAAAGAAC-----------------------GCAT--AAGTAGGCCATTCAAAGGTATGTAGAGAGAAAAAGGCCCTGTTAATATTCTGAG-ACCGTGGTTTCATCAGTCTAATCTTGAGTA-CTGTTGGATCAGTAGCCACTCCAACAAGTTGGAAAATGAGGGAATAACTGATATTTCTTTCATAATTCAG-------TGTATTCATTATGGTAT-ACTGTTGCAGTCATgcccccaacataagccag-cctcct-atacccatgcccttggacagcctactaccatattcaatagggctgatatgtgttaaccaataggacattgtagaaatggcaccatgtgtcatcagaggctgggttatcaaggaaattttagcttctaccttgtttgttctcttggttcagtctctg---------tg---------ggccaccatgcatgaggacattcaagcagccttatggagcagttc-acatggagagaaactaaggcctcctgccaacagccagcacca----actggccatataaatgagc-ac-----------------ctcga i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20274373 1001 - 85365473 aTTGCACTGACTGGGCCTGAACCCTCAAGTCACTGCGTCATGGAATTTTAAAGGAGAAGTCTGGCTTTTTCAGTTGTCTGGAGTGGATACTTAATTTAA-TTAAAGAGACAGAATGCATTTGATGAAAACAATTAAGCCACATTGGCATA-CTCTACATTGGCATCTAATATGATATGGCTATTTAATAAAAAGCT-AG--TATTCTGTTTGACAGATCAATTATTCATTAAATAGATGGGGCAGAAATGGACATGCAAAATTGAAGCTGATTAATTC--AGCAAAATCTTCAATAATACTGTCAATTTTAATCCAAGCCAATGGCTTCAAGCACAGCAG----GCAGCTTGATAGAGGGCAAAGTaatcacaatgca---------atgtgtt--aagtgcaagctataagaagcactatgtaaagagtattatgcaaaaacagaggagttgtaccctgacttggggatatcagaaaaatcttccttttaatagaggtaatatcATTCTTAGTTCTAAT------AGATGTCAGGCAAAGAAC-----------------------GCAT--AAGTAGGCCGTTCAAAGGTATGTAGAGAGAAAAAGGCCCTGTTCATATTCTGAG-Accctggtttcatcagtctaatcttgagta-ctgttggatcagcagccaccccaccaagttggaaaatgagggagtaattgatatttcttccacaatccag-------tgtattcattATGGTAC-ACTGTTGCAATCATgctcccaacatgagccag-cctcct-acacccatgcccttggacagcctactgccacattcaatagggctgatatgtgttaaccaacaggacattgtagaaatggcaccatgtgtcatcagaggctgggttatcaaagaaattttagcttctgccttgtttgttctcttggttcaatctctg---------tg---------ggccaccacgcatgaggacattcaagcagccttatggagcagttc-acatggagagaaactaaggcctcctgccgacagccagcacca----gctgcccatataaatgaactac-----------------cttga i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16740387 997 + 184069350 aTTGCACTGGTTGGGGTTGAACCTTCAAGTCATTGAATCACGGAATTTTAA---AGATGTCTGGCTTTTTCAGTTGTCTGGAGTGGATACTTAATTTAA-TTAAAGAGAC--AATGCATTTGATGAAAACAATTAAGCTGCATTGGCATA-CTCTACGTTGGCATCTAATATGATATGGCTATTTAATAAAAAGCT-AG--TATTCTGTTTGACAGATCAATTATTCATTAAACAGATGGGGCAGAAATGGACATGCAAAATCAAAGCTGATTAATTC--AGCAAAATCTTCAATAATACTGTCATTTTTAATCCAAGCCAATGGCTTCAAGCACAGCAG----GCAGCTTGATAGAGGGCAAAGTaatcacaatgca---------atgtgtt--aagtgcaagttataagaagcactatgtaaagagtattatgcagaaacacaggagttgtaacctgacttggggatatcagaaaaatcttccttttaatagaggtaatatAGTTCTTAGTTTTAAT------AGACGTCAGGGAAAGAAC-----------------------GCAT--AAGTAGGCCGTTCAAAGGTATGTAGAGAGAAAAAGGCCCTGTTAATATTCTGAG-ACCCTGGTTGCATCAGTCTAATCTTGAGTACCTGTTGGATTAGCAGCCATTCAACCAAGTTGGAAAATGAGGGAGTAATTGATATTTCTTCCACAATTCAG-------TGTATTCATTATGGTAT-ACTGTTGCAGTCATgcccccaacatgagccag-cctctt-atacccatgcccttggacagcctactaccacattcaatagggctgatatgtgttaaccaacaggacattgtagaaatggcagcatgtgtcatcagaggctgggttatcaaagaaatcttagcttctgccttgtttgttctcttggttcagtctctg---------tg---------ggccactatgcatgacgacattcaagcagccttatggagcagttc-acatggagagaagctaagacctcctgccgacaggcagcacca----actggccatataaatgagctac-----------------tttga i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20789607 996 + 189454096 aTTGCACTGGTTGGGGTTGAACCTTCAAGTCATTGAATCACGGAATTTTAA---AGATGTCTGGCTTTTTCAGTTGTCTGGAGTGGATAGTTAATTTAA-TTAAAGAGAC--AATGCATTTGATGAAAACAATTAAGCTGCATTGGCATA-CTCTACGTTGGCATCTAATATGATATGGCTATTTAATAAAAAGCT-AG--TATTCTGTTTGACAGATCAATTATTCATTAAACAGATGGGGCAGAAATGGACATGCAAAATCAAAGCTGATTAATTC--AGCAAAATCTTCAATAATACTGTCATTTTTAATCCAAGCCAATGGCTTCAAGCACAGCGG----GCAGCTTGATAGAGGGCAAAGTaatcacaatgca---------atgtgtt--aagtgcaagttataagaagcactatgtaaagagtattatgcagaaacagaggagttgtaacctgacttggggatatcagaaaaatcttccttttaatagaggtaatatAGTTCTTAGTTTTAAT------AGACGTCAGGGAAAGAAC-----------------------GCAT--AAGTAGGCCGTTCAAAGGTATGTAGAGAGAAAAAGGCCCTGTTAATATTCTGAG-ACCCTGGTTGCATCAGTCTAATCTTGAGTACCTGTTGGATTAGCAGCCATTCAACCAAGTTGGAAAATGAGGGAGTAATTGATATTTCTTCCACAATTCAG-------TGTATTCATAAtggtat-actgttgcagtcatgcccccaacatgagccag-cctctt-atacccatgcccttggacagcctactaccacattcaatagggctgatatgtgttaaccaacaggacattgtagaaatggcagcatgtgtcatcagaggctgggttatcaaagaaatcttagcttctgccttgtttgttctcttggtttagtctctg---------tg---------ggccactatgcatgacgacattcaagcagccttatggagcagttc-acatggagagaag-taagacctcctgccgacaggcagcacca----actggccatataaatgagctac-----------------tttga i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16377654 996 + 178775436 attgCACTGGTTGGGGTTGAACCCTCAAGTCATTGAATCACGGAATTTTAA---AGATGTCTGGCTTTTTCAGTTGTCTGGAGTGGATACTTAATTTAA-TTAAAGAGAC--AATGCATTTGATG-AAACAATTAAGCTGCATTGGCATA-CTCTACTTTGGCATCTAATATGATATGGCTATTTAATAAAAAGCT-AG--TATTCTGTTTGACAGATCAATTATTCATTAAACAGATGGGGCAGAAATGGACATGCAAAATCAAAGCTGATTAATTC--AGCAAAATCTTCAATAATACTGTCATTTTTAATCCAAGCCAATGGCTTCAAGCACAGCGG----GCAGCTTGATAGAGGGCAAAGTAATCACAATGCA---------ATGTGTT--AAGTGCAAGTTATAAGAAGCACTATGTAAAGAGTATTATGCAGAAACAGAGGAGTTGTAACCTGACTTGGGGATATCAGAAAAATCTTCCTTTTAATAGAGGTAATATAGTTCTTAGTTTTAAT------AGACGTCAGGGAAAGAAC-----------------------GCAT--AAGTAGGCTGTTCAAAGGTATGTAGAGAGAAAAAGGCCCTGTTAATATTCTGAG-ACCCTGGTTGCATCAGTCTAATCTTGAGTACCTGTTGGATTAGCAGCCACtcaaccaagttggaaaatgaGGGAGTAATTGATATTTCTTCCACAATTCAG-------TGTATTCATTATGGTAT-ACTGTTGCAGTCATGCCCCCAACATGAGCCAG-CCTCTT-ATACCCATGCCCTTGGACAGCCTACTACCACATTCAATAGGGCTGATATGTGTTAACCAACAGGACATTGTAGAAATGGCAGCATGTGTCATCAGAGGCTGGGTTATCAAAGAAATCTTAGCTTCTGCCTTGTTTGTTCTCTTGGTTCAGTCTCTG---------TG---------GGCCACTACGCATGACGACATTCAAGCAGCCTTATGGAGCAGTTC-ACATGGAGAGAAGCTAAGACCTCCTGCCGACAACCAGCACCA----ACTGGCCATATAAATGAGCTAC-----------------TTTGA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19864131 997 - 48547382 aTTGCACTGGTTGGGGTTGAACCCTCAAGTCATTGAATCACGGAATTTTAA---AGATGTCTGGCTATTTCAGTTGTCTGGAGTGGATACTTAATTTAA-TTAAAGAGAC--AATGCATCTGATGAAAACAATTAAGCCGCATTGGCATA-CTCTACGTTGGCATCTAATATGATATGGCTATTTAATAAAAAGCT-AG--TATTCTGTTTGACAGATCAATTATTCATTAAACAGATGGGGCAGAAATGGACATGCAAGATCAAAGCTGATTAATTC--AGCAAAATCTTCAATAATACTGTCACTTTTAATCCAAGTCAATGGCTTCAAGCACAGCGG----GCAGCTTGATAGAGGGCAAAGTAATCACAATGCA---------ATGTGTT--AAGTGCAAGTTATAAGAAGCACTATGTAAAGACTATTACACAGAAACAGAGGAGTTGTAACCTGACTTGGGGATATCAGAAAAATCTTCCTTTTAATAGAGGTAATATCATTCTTAGTTTTAAT------AGACGTCAGGGAAAGAAC-----------------------GCAT--AAGTAGACCGTTCAAAGGTATGTAGAGAGAAAAAGGCCTTGTTAATATTCTGAG-ACCCTGGTTGCATCACTCTAAACTTGAGTACCTGTTGGATTAGCAGCCACTCCACCAAGCTGGAAAATGAGGGAGTAATTGACATTTCTTCCACAATCCAG-------TGTATTCATTATGGTAT-ACTGTTGCAGTCATgcccccaacatgagccag-cctcct-acacccatgcccttggacagcctactaccacattcaatagggctgatatgtgttaaccaacaggacattgtagaaatggcagcgtgtgtcatcagaggctgggtgatcaaagaaattttagcttctgccttgtttgttctcttggttcagtctctg---------tg---------ggccactaggcatgacgacattcaagcagccttatggagcagttc-acatggagagaagctaagacctcctgccgacagccagcacca----acgggccatataaatgagctac-----------------tttga i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21220073 1020 - 190850796 aTTGCACTGAGTGGGGCTGAACCCTCAAGTCATTGAATCATGGAATTTTAAAGGTGGAGGGTGGCTTTTTCAGTTGTCTGGAGTGGATATTTAATTTAA-TTAAATAGATGGAAGGCATTTGACAAAAACAATTAAGCCACATTGGCATA-CTCTATCCTGGCATCTAATATGCTATGGCTATTTAATAAAACGGT-AG--TATTGTGTTTGACAGATCAATTATTCATTATATAGATGGGGCAGAAATGGACATGCAAAATTGAAGCTGATTAATTC--AGCAAAATCTTCAATAATACTGTCACTTTTAATACAAGCCAATGGCTTCAAGCACAGTGG----ACAGCTAGATCGAGGGCAAAGTaattacaatgca---------atgtgttgcaagtgcaagttataagaagcactatgtaaagagtgttacacaataacagaggagttgtaccctgacttggggatatcagaaaaatctttctTTTAATAGAGGTATTATCATTCTTAGTTTTAAT------AGATGTGAGGCAAAGAAC-----------------------ACAT---AGTAGACCATTCAAAGATATGTAGAGAGAAAAAGGCCCTGTTATTATACTGAG-ACCCTGGTTTCCTCAGTCTAATCTTGAGTACCTGTTGGATCAGGAGCCACTCCACCAAGTTGGAAAATGAGGGAGTAATTAATATTTTTTCCATAATCCAG-------TGTATTCATCTCTgtag-actgtggcagtcacgtcctcgccatgagtcag-cctcct-acacccatgcccttggacagcctactaccacatttaatagagctgatatgtgttaactaacaggacattgtagaaatggcagcatgtgtcatcagaaactgggttatcaaagaaattttagcttctgccttgtttgttctcttggttcactctctg---------ct---------ggctaccacacatgaagacattcaagcagccttatggagcagttc-acatggagagaaaccaagaccttctgccgacagccaacacca----actggccatatacgtgagctatatgaatattgattctcaattga i calJac3.chr3 C 0 C 0 s mm10.chr5 49208567 975 + 151834684 ATTGCAGCCATTTGGTTTGGACTATCAGGTCACT-------GGAATTCTAAAGATGGAGGATGAC-----CAGTTGGATGTCAGTCATAGACAATTTAA-TTAAGGAGATTGAATGCATTTAGTAAATGCAAGTGGACCATA-CAGCACA-TTTCACTGTAGCATCTAACATGCTATGGCTATTTAACAAAATGCTCAG--AATTATGTTTGACAGATCAATTATTCATCAAATTGATGGGG-AAACATTGACA--CAAAAGTACATCTTATTAACTTAGAGAAAAGTTTTCAATAATATTGTCACTTTTTATTAAAGGCACTATCTGCAAGTACAGTCGCTTTACACTTT------------AGTAATCAAAATACT---------GTGTACT--CAGCCAAAATCTGAAGCAGCATTCTATAAA-AGCTCTGTGGGCAAA-AGAATATTCCTTTCCTTACT------CATTAAGAAGGCTTTTCTCCAAAGAGGGGTATTGTTGT--TTAGCTACTATGGGGGGGGGTGTCAAACCAGAAACAGCCAAACATTCTGACATTTCAAACATTCAAACATTTCATTCTGAGGTACCT---CAGAAAGAACGCCCCTTGATGTTCCTAGTGCCCT--TTTCATGTGTCTAACCTTCAGTTTCTGGCATTTGAACA-CCATGCCACAAGATT-----ATGATAGA-CAACTAATATGTTCTC-----TTCAG-------TGTA-------AGGTATGATTACAGTAATCGTGTTTTcca-atgagttac-tgtcttcacatccatgtccttggatgggaaacttcagtgtgacatagggctgatgt--------------ggcattgtagaaatgacagtgtgcaacttcacaggtgaggttgttaaaaaaatcctagcttctgcattggttgttctctttgattactggctagaaaggaactt---------aatcactatgagcacaaatgctctagtaggcttattgagaaattctttttagagag-----aaggcctcccatcaacaatcggcaccaggtgactggccatagtaagaaactgc-----------------tctaa i mm10.chr5 C 0 I 1119 s canFam3.chr3 3798853 990 - 91889043 ATTGCATAGATTTGGGCTAAACTCTCAAGTCACTAAATTATAGAATTTCAATGTTGAAAGCTGACTTTTTAGGTTGTCTGTAGTGGGCACTTAATTTAACTCAACGAGATGGGAAGTATTTGATAAAAACAGTTAGGCCATATCAGCATATTTTTAGATTGGCATTGAATATGTGATGGCTTTTTAATGAAAACCT-TGGTTATTAAGTTTGACAGATCAATTATTAATCATATAGATGGAGCAGAAAGGGACATGCAACATCAGAGTTGGTTAACTC--AGCAAAGTCTTCAATAATATTGTCACTTTTTATCAAACCCAGTGGCTTGAAGCACCTTGG--------TTTCATGGAAGAAAAAGTGATCGCAATACAAATCCTATTAAATGGC--AAGTGCAAATCATAGGAAGCACTATGTAAAGGGTATGACG---AAAAACAGGAGGTATACCTTATCTTGGTGATATGAGGAACATCTTTCTCCATGTAGAGGTAAT---GTTCTTAGTT-TAAT------ACATGGCACACAAAGGAT-----------------------ACAT--AAGTAGAACCT-----------TAGGGGGGAAATACCTATTTTACTGTCCCTAG-GTCCCATTCTCATCAGTCTAATCCTGAGTAGGTGCTGTCTCAGAGATGACTCCACCAAGCTAGAAAAGGA-AGACTAATTAATACCCCTTCCTCAATCCAGGATATCTTCTATTCATTATGATAG-GCTGCCACAGGCACAGACCCCA-AGGGGTCAGCCCTCTT-GATCCCATTCTTTTGAACAGATGTctgccatactgaataggcctgatgtatgttaaccaataggatattagagaaatg----------------------gggttatacaagatattgcatcttctaccttgtttcttcttctggatcactctctg---------tgagtgaagccagccaccatgcatgaggacattcaggaatccctctggacaactcc-atgtggagcagaaccagggcctcctgccaacatccagcaccaacttactgaccatacaaataagctac-----------------ataga i canFam3.chr3 C 0 C 0 a score=1402702.000000 s hg38.chr4_KI270790v1_alt 99289 411 + 220246 tcatgaatg------cagactctctaaagcctttacatggatgcaacctcatgagagacccctgtccagaagaacacaattaagctcctgaattcctgacccacagaagagctgtgagatactaaatgcctattgttgttttaagccactaaattttgaggtaa--tttattatgtggtaatagataactaagacaTGAGTATACACTAACCCTAAAATAATCTCAAAATCCCTTCATGTTGTccaggtagtaccattaaatgtgacctgcatgttctcataagtgtatgtggtaagaaatgttccatgcatttatttacatgtgtctctagaaaaatattctacagggaaacaattcttctattcctcaatggatccaggtagggc-ccaccaacactttcatttattctggtggccag s panTro4.chr4 21485837 411 + 193495092 tcatgaatg------cagactctctaaagcctttacatggatgcaacctcatgagagacccctgtccagaagaacacaattaagctcctgaattcctgacccacagaagagctgtgagatactaaatgcctattgttgttttaagccactaaattttgaggtaa--tttattatgtggtaatagaaaactaagacaTGAATATACACTAACCCTAAAATAATCTCAAAATCCCTTCATGTTGTccaggtagtaccattaaatgtgacctgcatgttctcataagtgtatgtggtaagaaatgttccatgcatttatttacatgtgtctctagaaaaatattctacagggaaacaattcttctattcctcaatggatccaggtagggc-ccaccaacacttccatttattctggtggccag i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21663024 408 + 198332218 tcatgaatg------cagactctctaaagcctttacatggatgcaacctcatgagagacccctggccagaagaacacaagtaagctcctgaattcctgacccacagaagagctgtgagatactaaatgccta---ttgttttaagccactaaattttgaggtaa--tttattatgtggtaatagataactaagacaTGAATATACACTAACCCTAAAATAATCTCAAAATCCCTTCATGTTGTCCAGGTAGTACCATTAAATGTGACCTGCATGTTCTCATAAGTATACATGGTAAGAAATGTTCCATGCATTTATTTACATGTGTCTCTAGAAAAATATTCTACATGGAAACAATTCTTCTATTCATCAATGGATCCACGTAGGGC-CCACCAACACTTTCATTTATTCTGGTggccag i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20275374 411 - 85365473 tcatgaatg------cagactctctaaagcctttacatggatgcaacctcatgagagacccctggccagaagaacacaattaagctcctgaattcctgacccacagaagagctgtgagatactaaatgcctattgttgttttaagccactaaattctgaggtaa--tttattatgtggtaatagataactaagacaTGAATATACACTAACCCTAAAATAATCTCAAAATCCCTTCATGTTGTccaggtagtaccattaaatgtgacctgcatgttctcataagtgtatgtggtaaggaatgttccatgcatttttttacatgtgtctctagaaaaaaattctacagggaaacaattcttctattcctcaatggatccaggtagggc-ccaccaacactttcatttattctggtggccag i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16741384 408 + 184069350 tcatgaatg------cagactctctaaagcctttacgtg---gcaacctcatgagagacccctggccagaagaacacaattaagttcctgaattcctgatccacagaagagttgtgagatactaaacgcttattgttgttttaagccactaaattttgaggtaa--cttattatgtggtaatagataactaagacaTGAATATACACTAACCCTAAAATAATCTCAAAACCTCTTCATGTTGTccaggtagtacccttaaatatgacctgcatgttctcataagtgtacgtggtaagaaatgttccatgtatttatttacatgtgtctctagaaaaatattttacagggaaataattcttctattcctcaatggatccaggtagggc-ccatcaacactttcatttattctggtggccag i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20790603 408 + 189454096 tcatgaatg------cagactctctaaagcctttacgtg---gcaacctcatgagagacccctggccagaagaacacaattaagttcctgaattcctgatccacagaagagttgtgagatactaaacgcttattgttgttttaagccactaaattttgaggcaa--cttattatgtggtaatagataactaagacaTGAATATACACTAACCCTAAAATAATCTCAAAACCTCTTCATGTTGTccaggtagtacccttaaatatgacctgcatgttctcataagtgtacgtggtaagaaatgttccatgtatttatttacatgtgtctctagaaaaatattttacagggaaataattcttctattcctcaatggatccaggtagggc-ccatcaacactttcatttattctggtggccag i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16378650 408 + 178775436 TCATGAATG------CAGACTCTCTAAAGCCTTTACGtg---gcaacctcatgagagaccccTGGCCAGAAGAACACAATTAAGTTCCTgaattcctgatccacagaagAGTTGTGAGATACTAAATgcttattgttattttaagccactaaattttgaggTAA--CTTATTATGTGGTAATAGATAACTAAGACATGAATATACACTAACCCTAAAATAATCTCAAAACCTCTTCATGTTGTCCAGGTAGTACCCTTAAATATGACctgcatgttctcataagtgtACGTGGTAAGAAAtgttccatgtatttatttacatgtgtctctagaaaaatattttacagggaAACAATTCTTCTATTCCTCAATGGATCCAGGTAGGGC-CCATCAACACTTTCATTTAATCTGGTGGCCAG i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19865128 408 - 48547382 tcatgaatg------cagactctctaaagcctttacatg---gcaacctcatgagagacccctggccagaagaacacaattaagttcctgaattcctgatccacagaagagttgtgagatactaaatgcttattgttgttttaagccactaaattttgaggtaa--cttattatgtggtaatagataactaatacaTGAATATACACTAACCCTAAAATAATCTCAAAACCCCTTCATATTGTccaggtagtacccttaaatatgacctgcatgttctcataagtgtacgtggtaagaaacgttccatgcatttatttacatgtgtctctagaaaaatattttacagggaaacaattcttctgttcctcaatggatccaggtagggc-ccatcaacactttcatttattctggtggccag i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21221093 402 - 190850796 tcatgaatg------cagactctcgaaagcctttgcatggatgcagccttatgagagatccctggtcagaagaacacagttaagctactaaattcctgacccatggaagagctgtgagatactacatgcctattgttgtttttagttactaaattttgaggcaa--tttactat---------gataactaagatacGAATATACACTAACCCTAAAATAATCTCAAAATCCCTTCATATTGCCCAGATAGTACCATTAAATATAACCTGCATGTTCTCATAAATTTACATGGTAAGAAATGTTTTATGCATTTTTTTACATGTGTCTCTAGAAGATTGTTCTACAGGGAAACAATTGTTCTATTCCTCAATGAATCCAGGTAGGGC-TCATCAACACTTTTGTTTATTCTGCTggccag i calJac3.chr3 C 0 C 0 s canFam3.chr3 3799843 398 - 91889043 ---tggaggaagcttcagaccatc--aagccttgagaagactgtaatcttacgtgagaacccaggccagaagaacacagctaaactactggattcctggaccacaga--agcagagacataatgaatgctta-tgttgttttgagtaactaaattttgaggtaaattttattatgtggcatt-ggtaactaatataCTGATATACTCTAATTCTGACATAATCTCTGA--------GGAATGcccaagtactaccattaaatatggcc----tgtttccataaatacatgtggtgaagaatgttctgtgcacatatttacatttgtctctggaagagt-ttctatgtggaagcaattcatccatttctcaatggatccaggtagggctccatcgacactttcatttctcctgctgttcag i canFam3.chr3 C 0 C 0 e mm10.chr5 49209542 1119 + 151834684 I a score=341039.000000 s hg38.chr4_KI270790v1_alt 99700 131 + 220246 gcaagtgcaatggtccatgcctgtaagcccagcactttgggaggttgaactgg---gcagatcacctgaggtcaggggttcaagcagcctggccaa-atggtgaaaatctgtctctactaaaaatac------------aaaaaaaa s panTro4.chr4 21486248 131 + 193495092 gcaagtgcaatggtccatgcctgtaagcccagcactttgggaggtcgaactgg---gcagatcacctgaggtcaggcgttcaagcagcctggcgaa-atggtgaaaatctgtctctactaaaaatac------------aaaaaaaa i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21663432 123 + 198332218 gctagtgcagcggctcat--------gcccagcactttgggaggtcgaagtgg---gcagatcacctgaggtcaggtgttcaagcagcctggccaa-atagtgaaaacctgtttctactaaaaatac------------aaaaaaaa i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20275785 131 - 85365473 acaagtgcagtggtccatgcctgtaagcccagcactttgggaggtcgaactgg---gcagatcacctgaggtcaggcattcaagcagcctggccaa-atggtgaaaatctgtctctactaaaaatac------------gaaaaaaa i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16741792 143 + 184069350 gctagtgcagtggctcatgcctgtaagcctagcactgtgggaggtcgaagtgg---gcagatcacctgaggtcaggtgttcaagcagcctggccaa-atggtgaaaccctgtctctactaaaaatacaaaaaaaaaaaaaaaaagaa i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20791011 137 + 189454096 gctagtgcagtggctcatgcctgtaagcctagcactgtgggaggtcgaagtgg---gcagatcacctgaggtcaggtgttcaagtagcctggccaa-atggtgaaaccctgtctctactaaaaatac------aaaaaaaaaaagaa i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16379058 140 + 178775436 Gctagtgcaatggctcatgcctgtaagcccagcactgtgggaggtcgaagtgg---gcagatcacctgaggtcaggtgttcaagcagcctggccaa-atggtgaaaccctgtctctactaaaaatac---aaaaaagaaaaaagaaa i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19865536 133 - 48547382 gctagtgcagtggctcatgcctgtaagcccggcactgtgggaggtcgaagtgg---gcagatcacctgaggtcaggtgttcaagcagcctggccaa-atggtgaaaccctgtctccactaaaaatac----------aaaaaaaaaa i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21221495 131 - 190850796 gcaagtacagtggcttatgtctgtaatcccagcact-tgggcgtccaaagagggcagcagatcacctgaggtcagacgttcaagcagcctggccaacatggtgaaacctcatctctgctaaaaa---------------ataataat i calJac3.chr3 C 0 C 0 e mm10.chr5 49209542 1119 + 151834684 I e canFam3.chr3 3800241 0 - 91889043 C a score=30436.000000 s hg38.chr4_KI270790v1_alt 99831 9 + 220246 aaaaaa-tta s panTro4.chr4 21486379 10 + 193495092 aaaaaaatta i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21663555 10 + 198332218 aaaaaaatta i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20275916 10 - 85365473 aaaaaaatta i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16741935 10 + 184069350 aaaaaaatta i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20791148 10 + 189454096 aaaaaaatta i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16379198 10 + 178775436 aaaaaaatta i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19865669 10 - 48547382 aaaaaaatta i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21221626 10 - 190850796 aaaaaatttt i calJac3.chr3 C 0 C 0 s canFam3.chr3 3800241 9 - 91889043 -agaaaatta i canFam3.chr3 C 0 C 0 e mm10.chr5 49209542 1119 + 151834684 I a score=363671.000000 s hg38.chr4_KI270790v1_alt 99840 133 + 220246 gccaggcgtggtagcatgcacctgtaat-ccagctatgcgggagactgaggcaaaagcttaaactcaagagatggaggttgcagtgagccgagatggtggggctgcactccagcctgggtgagaaagcgagact s panTro4.chr4 21486389 133 + 193495092 gccaggcgtggtagcatgcacctgtaat-ccagctatgcgggagactgaggcaaaagcttaaactcaagagatggaggttgcagtgagccgagatggtggggctgcactccagcctgggtgagaaagcgagact i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21663565 133 + 198332218 gccaggcatggtagcatgcacctataat-ccagctatgtgggaggctgaggcaaaaacttaaactcaagagatggaggttgcagtgagctgagatggtgccgctgcactccagcctgggtgagaaagtgagact i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20275926 133 - 85365473 gccaggcgtggtagcatgcacctgtaat-ccagctatgtgggagactgaggcaaaagcttaaactcaagagacggaggttgcagtgagccgagatggtggggctgcactccagcctgggtgagaaagcgagact i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16741945 134 + 184069350 gccaggtgtggtaggatgcacctgtaataccagctatgcaagaggctgaggcaaaaacttaaactcaggagacggaggttgcagtgagctgagatctcaccactgcactccagcctgggtgagagagtgagact i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20791158 134 + 189454096 gccaggtgtggtaggatgcacctgtaataccagctatgcaagaggctgaggcaaaaacttaaactcaggagacggaggttgcagtgagctgagatctcaccactgcactccagcctgggtgagagagtgagact i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16379208 134 + 178775436 gccaggtgtggtaggatgcacctgtaataccagctatgcaagaggctgaggcaaaaacttaaactcaggagacggaggttgcagtgagctgagatctcaccactgcactccagcctgggtgagagagtgagact i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19865679 134 - 48547382 gccaggtgtggtagtgtgcacctgtaataccagctatgcaagaggctgaggcaaaaacttaaactcaggaaatggaggttgcagtgagctgagatctcaccactgcactccagcctgggtgagagagtgagact i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21221636 130 - 190850796 accagatgtgatgtaacacacctataatcccaactatgcagtaggctgaggcacgaacttgaactcagga---ggaggttgcagtgagccgagattctg-cactgcactcaagcctgggtgagagagtgagact i calJac3.chr3 C 0 I 360 e mm10.chr5 49209542 1119 + 151834684 I e canFam3.chr3 3800250 0 - 91889043 C a score=21980.000000 s hg38.chr4_KI270790v1_alt 99973 9 + 220246 ctatctcaa s panTro4.chr4 21486522 9 + 193495092 ctatctcaa i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21663698 9 + 198332218 ctacctcaa i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20276059 9 - 85365473 ctatctcaa i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16742079 9 + 184069350 ctatctcaa i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20791292 9 + 189454096 ctatctcaa i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16379342 9 + 178775436 ccatctcaa i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19865813 9 - 48547382 ctatctcaa i chlSab2.chr27 C 0 C 0 e mm10.chr5 49209542 1119 + 151834684 I e calJac3.chr3 21221766 360 - 190850796 I e canFam3.chr3 3800250 0 - 91889043 C a score=83200.000000 s hg38.chr4_KI270790v1_alt 99982 36 + 220246 aaaaaaaaaa------aaaa-----ttcttctggtcagagaaaatca s panTro4.chr4 21486531 41 + 193495092 aaaaaaaaaa------aaaaaaaaattcttctggtcagagaaaatca i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21663707 47 + 198332218 aaaaataaaaCAATTTACAAAAAAATTCTGCTGGTCAGAGAAAATCA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20276068 38 - 85365473 aaaaaaaaaa------aaaa---aattattctggtcagagaaaatca i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16742088 45 + 184069350 aaaaataaaa--aataaaaaataaattctgctggtcaaaaaaaatca i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20791301 45 + 189454096 aaaaataaaa--aataaaaaataaattctgctggtcaaaaaaaatca i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16379351 45 + 178775436 aaaaataaaa--aataaaaaataaattctgctgGTCAGAAAAAATCA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19865822 44 - 48547382 aaaaataaaa--aataaaaaa-aaattctgctggtcagaaaaaatca i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21222126 36 - 190850796 aaaattaaaa-----------taaattCTGCTGGTCAAATAAAATCA i calJac3.chr3 I 360 C 0 e mm10.chr5 49209542 1119 + 151834684 I e canFam3.chr3 3800250 0 - 91889043 C a score=524692.000000 s hg38.chr4_KI270790v1_alt 100018 155 + 220246 attcagcctttagctgagtagaatgagtacaaactgaaaagattattagagagtgaattt-tattcatgcagacaacacg-ctcttgacatgagggatgcaggtgtttaggcatatgctatacaaacttccagggcataaaaccaggccagaaagaa- s panTro4.chr4 21486572 155 + 193495092 attcagcctttagctgagtagaatgagtacaaactgaaaagattattagagagtgaattt-tattcatgcagacaacacg-ctcttgacatgagggatgcaggtgtttaggcatatgctatacaaacttccagggcataaaaccaggccagaaagaa- i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21663754 155 + 198332218 ATTCAGCCTTTAGCTGAGTAGAATGAATACAAACTGAAAAGATTATTAGAGAGCGAATTT-TATTCATGCAGACAACACG-CTCTTGACATGAGGGATGCAGGTGTTTAGCCATATGCTTTACAAACTTCCAGGGTATAAAACCAGGCCAGAAAGAA- i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20276106 155 - 85365473 attcagcctttagctgagtagaatgaatacaaactgaaaagattattagacagtgaattt-tattcatgcagacaacaca-ctcttgacatgagggatgcaggtgtttaggcatatgctatacaaacttccagggtataaaaccaggccagaaagaa- i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16742133 156 + 184069350 attcagtgtttagttgagtagaatgaatctaaactgaaaagatgattagagagtgaattt-tattcacacagacaacatgcctcttgacatgaaagatacaagtatttaggcatatgctgtacaaacttccagggtgtaaaaccaggccagaaagTA- i rheMac3.chr5 C 0 I 26 s macFas5.chr5 20791346 156 + 189454096 attcagtgtttagttgagtagaatgaatctaaactgaaaagattattagagagtgaattt-tattcacgcagacaacatgcctcttgacatgaaagatacaagtatttaggcatatgctgtacaaacttccagggtgtaaaaccaggccagaaagaa- i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16379396 156 + 178775436 ATTCAGTGTTTAGTTGAGTAGAATGAATCTAAACTGAAAAGATTATTAGAGAGTGAATTT-TATTCATGCAGACAACATGCCTCTTGACATGAAAGACACAAGTATTTAGGCATATGCTGTACAAACTTCCAGGGTGTAAAACCAGGCCAGAAAGAA- i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19865866 156 - 48547382 attcagtgtttagctgagtagaatgaatccaaactgaaaagattattagagagtgaattt-tattcacgcagacaacatgcctcttgacatgagcgatgcaagtatttaggcatatgctgtacaaacttccagggtgtaaaaacaggccagaaagaa- i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21222162 156 - 190850796 ATTCAGCCTTGAGCTGAGTAGAATGAATGCAAACTAAAAAGATGGTTAGAGTGTGAATTT-TATTCATGCAGACAACATACCTCTTGACATGTGGGATGAAAACGTTTAGGCATATGCTATACAAACTTCCAGGGCATAAAACCAGGCCAGAAAGAC- i calJac3.chr3 C 0 I 1 s canFam3.chr3 3800250 158 - 91889043 attcagccttgagctgaacagaataaatgcaaaccaaaaagattattagagtgtgactttgtattcatgcagacaacactctccctgacatgagggatgcaagtgttaaggcatatgatatacaacctgccaaggtacaaaaccatgcccaaaaaaca i canFam3.chr3 C 0 C 0 e mm10.chr5 49209542 1119 + 151834684 I a score=251945.000000 s hg38.chr4_KI270790v1_alt 100173 93 + 220246 ttttctggtcaaacaagctcaacagcttaatagcagttcc---aaagctagga-aaaatgaatgcacccctaccttcacta--gactatttccctcctc s panTro4.chr4 21486727 93 + 193495092 ttttctggtcaaacaagctcaacagcttaatagcagttcc---aaagctagga-aaaatgaatgcacccctacgttcacta--gactatttccctcctc i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21663909 94 + 198332218 TTTTCTGGTCAAACAAGCTCAACAGCTTAATAGCAGTTCC---AAAGCTAGGAGAAAATGAATGCACCCCTACCTTCCCTA--GACTATTTCCCTCCTC i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20276261 93 - 85365473 ttttctggtcaaacaagctcaacagcttaatagcagttcc---aaagctagga-aaaatgaatgcacccctaccttcacta--gactatttcccttctc i nomLeu3.chr20 C 0 C 0 s macFas5.chr5 20791502 94 + 189454096 ttttctggtcaaacaagctcaacagcttaatagcagttcc---aaacctaggagaaaatgaatgcacccctgccttcgcta--gactatttccctcctc i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16379552 94 + 178775436 TTTTCTGGTCAAACAAGCTCAACAGCTTAATAGCAGTTCC---AAAGCTAGGAGAAAATGAATGCACCCCTACCTTCACTA--GACTATTTCCCTCCTC i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19866022 94 - 48547382 ttttctggtcaaacaagcccaacagcttaatagcagttcc---aaagctaggagaaaatgaatgcacccccactttcacta--gactatttccctcctc i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21222319 94 - 190850796 TATTCTGGTGAAACAAACTCAACAGGTTAATAGCAGTTCC---AAAGCTAGCAGAAAATTAATGCACCCCTACTTTTACTA--GACTACTTCCCTCCTC i calJac3.chr3 I 1 C 0 s canFam3.chr3 3800408 97 - 91889043 tattctggccaagcaagctcaccagctgaatagaaactcccttacagct--gacaaaatagatgtactcctatcttcattggtgactatttaccccctc i canFam3.chr3 C 0 C 0 e mm10.chr5 49209542 1119 + 151834684 I e rheMac3.chr5 16742289 26 + 184069350 I a score=142960.000000 s hg38.chr4_KI270790v1_alt 100266 60 + 220246 ccagctggaaagataaagggaaaataaacccttaaatattgagCTATATATATATAA--------GTA s panTro4.chr4 21486820 60 + 193495092 ccagctggaaagataaagggaaaataaacccttaaatattgagCtatatatatataa--------gta i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21664003 68 + 198332218 CCAGCTGGAAAGAAAAAGGGAAAATAAACCCTTAAATATTTTtatatatatatatacacacacatata i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20276354 58 - 85365473 ccagctggaaagataaagggaaaataaacccttaaatattgagCTATATATATATAA----------A i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16742315 57 + 184069350 CCAGTTGGAAAGATAAAGGGAAAATAAACCCTTAAATATTGAGCTATATATACACAC----------- i rheMac3.chr5 I 26 C 0 s macFas5.chr5 20791596 57 + 189454096 ccagctggaaagataaagggaaaataaacccttaaatattgagCTATATATACACAC----------- i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16379646 57 + 178775436 CCAGCTGGAaagataaagggaaaataaacCCTTAAatattgagctatatatacacac----------- i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19866116 57 - 48547382 ccagctggaaagataaagggaaactaaacccttaaatattgagCTATATATATACAC----------- i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21222413 54 - 190850796 CAAGCTAGAAAGATAAAGGGAA---AAGCCCTTAAATACTGAGCTATATATATGAAT----------- i calJac3.chr3 C 0 C 0 s canFam3.chr3 3800505 29 - 91889043 tcagacagagagataaaggaaaa---------taagaa------------------------------ i canFam3.chr3 C 0 C 0 e mm10.chr5 49209542 1119 + 151834684 I a score=201159.000000 s hg38.chr4_KI270790v1_alt 100326 88 + 220246 TTTATATATATA-------ATATATATAGCttaaattaagctataatatagcttcta------------------------tttaatgcatattaaatcaaatatacattatatataaa--------------------------------------- s panTro4.chr4 21486880 88 + 193495092 tttatatatata-------atatatataGCTTAAATTAAGCTATAATATAGCTTCTA------------------------TTTAATGCATATTAAATCAAATATACATTATATATAaa--------------------------------------- i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21664071 88 + 198332218 tatttatatata-------ttatatataGCttaaattaagctataatataccttcta------------------------tttaatgcatattaaatcaaatatacattatatataaa--------------------------------------- i ponAbe2.chr4 C 0 I 117 s nomLeu3.chr20 20276412 88 - 85365473 TATTTATATACA-------ATATATATGGCttaaattaagctataatatagcttcta------------------------tttaatgcatattaaatcaaatatacattatatataaa--------------------------------------- i nomLeu3.chr20 C 0 I 5 s rheMac3.chr5 16742372 87 + 184069350 -ACATATATAAA-------ATATATATAGCTTAAATTAATCCATAATATAGCTTCTA------------------------Tttaatgtatattaaatcaaatatacattacatataaa--------------------------------------- i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20791653 87 + 189454096 -ACATATAtaaa-------atatatatagcttaaattaatccataatatagcttcta------------------------tttaatgtatattaaatcaaatatacattacatataaa--------------------------------------- i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16379703 87 + 178775436 -acatatataaa-------atatatatagcttaaattaatctataatatagcttcta------------------------tttaatgtatattaaatcaaatatacattacatataaa--------------------------------------- i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19866173 87 - 48547382 -ACATATATATA-------ATATATATAGCttaaattaatctagaatatagcttcta------------------------tttaatgtatattaaatcaaatataccttacatataaa--------------------------------------- i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21222467 157 - 190850796 -ACTTATATATATTAAGCTATACTTAGTGCATTATTTAGGTTATACCATAGTTTATATTTAAAATATGTTTAATTAGTATGTTTAATGTCTATTTAATTTAATAtgcattaaatatataagattactatatatcagtttatatttaacattatgttaa i calJac3.chr3 C 0 C 0 e mm10.chr5 49209542 1119 + 151834684 I e canFam3.chr3 3800534 0 - 91889043 C a score=26813.000000 s hg38.chr4_KI270790v1_alt 100414 18 + 220246 ataaaat-tacattacatt--- s panTro4.chr4 21486968 18 + 193495092 ataaaat-tacattacatt--- i panTro4.chr4 C 0 C 0 s nomLeu3.chr20 20276505 18 - 85365473 ataaaat-aaaattacatt--- i nomLeu3.chr20 I 5 C 0 s rheMac3.chr5 16742459 18 + 184069350 ataaaat-tacaccacatt--- i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20791740 18 + 189454096 ataaaat-tacaccacatt--- i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16379790 18 + 178775436 ataaaat-tacactacatt--- i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19866260 18 - 48547382 ataaaat-aacaccacatt--- i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21222624 22 - 190850796 attaaatatgcattaaatatat i calJac3.chr3 C 0 C 0 e mm10.chr5 49209542 1119 + 151834684 I e canFam3.chr3 3800534 0 - 91889043 C e ponAbe2.chr4 21664159 117 + 198332218 I a score=319179.000000 s hg38.chr4_KI270790v1_alt 100432 122 + 220246 aaaattatattaaattaaaattaaatatacattatagc---------------ttaaatATACACATTTAAGCTATATATATAATTTAAGCTTATATAGATAAATTCATATATTTATGGCTTATATATGTATAATCT s panTro4.chr4 21486986 122 + 193495092 aaaattatattaaattaaaattaaatATACATTATAGC---------------Ttaaatatacacatttaagctatatatataatttaagcttatatagataaattcatatatttacggcttatatatgtataatct i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21664276 121 + 198332218 aaaattacattaaattaaaattaaatatacattatagc---------------ttaaatATACACATTTAAGCTAT-TATATAATTTAAGCTTATATAGATAAATTCATATATTTATGGCTTATATATGTATAATCT i ponAbe2.chr4 I 117 C 0 s nomLeu3.chr20 20276523 122 - 85365473 aaaattacattaaattaaaattaaatatacattatagc---------------ttaaatATACACATTTAAGCTATATATATAATTTAAGCTTATATAGATAAATTCATATATTTACGGCTTATATATGTATAATCT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16742477 113 + 184069350 aaaattacattaaattaaaAT----tatatattatagc---------------ttaaatatacacatttaagctatatata-----taagttgatatagataaatttatatatttatggcttatatgtgtataatct i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20791758 113 + 189454096 aaaattacattaaattaaaat----tatacattatagc---------------ttaaatATACACATTTAAGCTATATATA-----TAAGTTGACATAGATAAATTTATATATTTATGGCTTATATGTGTATAATCT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16379808 118 + 178775436 aaaattacattaaattaaaat----tatacattatagc---------------ttaaatatacacatttaagctatatatataatttaagttgatatagataaatttatatatttatggcttatatgtgtataatct i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19866278 113 - 48547382 aaaattacattaaattaaaat----tatacattatagt---------------ttaaatATACACATTTAAGCTATATATA-----TAAGTTGATATAGATAAATTTATATATTTATGGCTTATATGTGCATAATCT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21222646 135 - 190850796 aaaattacattacattaaaattaaatgtacattataACTtaaatatgtatattttaaatatgtatatttaagctatagatataatttaagtttatat--ataaatgtatatatttatagcttatatatgtataatct i calJac3.chr3 C 0 C 0 e mm10.chr5 49209542 1119 + 151834684 I e canFam3.chr3 3800534 0 - 91889043 C a score=42876.000000 s hg38.chr4_KI270790v1_alt 100554 12 + 220246 AAATCTAAATAT s panTro4.chr4 21487108 12 + 193495092 aaatctaaatat i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21664397 12 + 198332218 AAATCTAAATAT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20276645 12 - 85365473 AAATCTAAATAT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16742590 12 + 184069350 aaatctaaatat i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20791871 12 + 189454096 AAATCTAAATAT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16379926 12 + 178775436 aaatctaaatat i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19866391 12 - 48547382 AAATCTAAATAT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21222781 12 - 190850796 aagtctaaatat i calJac3.chr3 C 0 C 0 s canFam3.chr3 3800534 12 - 91889043 gaacttgagtat i canFam3.chr3 C 0 C 0 e mm10.chr5 49209542 1119 + 151834684 I a score=1594238.000000 s hg38.chr4_KI270790v1_alt 100566 515 + 220246 AT--ATCatctaaatctcttacagacacgcat----t-ttaaaacccatc-aaaa-----------------aagctgacaagtcaggaatccgttttaggacacctatgggcatattctgggaaaggagtcttaatcattgagaagcaaactctggagcca-tttcatggagggatct-----taaaggcacacaaccattggttttactgcacatgtgtcaccgtctgaagccatcctgcaactctcac--gagtcatctgctctgaagtag--agcacac-------ct-----attt-ctggaaaaagaggatcagactgtctttttctgagtgtggttggcatcta-tgggataggctttcctggtTAAAAACTAGTTAGTTAAAAACTAGGAAGATAAGAGTAGCACAATTGAAAGAA--AGAATGAAAGAAGGAGGGAGAGAAAAGAGTGAAAGTAGAA---AAATC--AGGAAAATCTTTCAGTGATAGAATAAAAATAAATCAAAGGAAAAA-AGAA---AAAAATAATGATTAGAGTAAAAGAAACTAGA---AATAACTTTAAAAAC s panTro4.chr4 21487120 517 + 193495092 at--atCatctaaatctcttacagacatgcat----t-ttaaaacccatc-gaaa-----------------aagctgagaagtcaggaatccattttaggacacctatgggcatattctgggaaaggagtcttaatcattgagaagcaaactctggagcca-ttccatggagggatct-----taaaggcacacaactattggttttactgcacatgtgtcaccgtctgaagccatcctgcaactctcacatgagtcatctgctctgaagtag--agcacac-------at-----attt-ctggaaaaagaggatcagactgtctttttctgagtgtggttggcatcta-tgggataggctttcctggtTAAAAACTAGTTAGTTAAAAACTAGGAAGATAAGAGTAGCACAATCGAAAGAA--AGAATGAAAAAAGGAGGGAGAGAAAAGAGTGGAGGTAGAA---AAATC--AGGAAAATCTTTCAGTGATAGAATAAAAATAAATCAAAGGAAAAG-AGAA---AAAAATAATGATTAGAGTAAAAGAAACTAGA---AATAACTTTAAAAAC i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21664409 513 + 198332218 AT--ATCATCTAAATCTCTTACAGACACGCAT----T-TTAAAACCCATC-AAAA-----------------AAGCTGACAAGTCAGGAATCCGTTTTAGGACACCTATGGGCATATTCTGGGAAAAGAGTCTTAATCATTGAGAAGCAAACTCTGGAGCCAGTTCCATGGAGGGATCT-----TAAAGGCACACAACCATTGGTTTTACTGCACATGTGTCACCCTCTGAAGCCATCCTGCAACTCTCACATGAGTCATCTGCTCTGAAGTAG--AGCACAC-------CT-----ATTT-CTGGAAAAAAAGGATCAGACTGTCTATTTCTGAGTGTAGTTAGCATCTA-TGGAATAGGCTTTCCTGGTTAAAAACTAGTTAGTTAAAAACTAGGAAGTTAAGAGTAGTACAATagaaagaa--agaatgaaagaaggagggagagaaagGAGTGGAGGTAGAA---AAATG--AGGAAGATCTTTCAGTGACAGGATAAAAATA----AAAGGAAAAG-AG-A---AAAATTAATGATTAGAGTAAAAGAAAACAGA---AATAACTTTAAAAAC i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20276657 518 - 85365473 AT--ATCatccaaatctcttacagacacgcat----t-ttaaaacccatc-aaaa-----------------aagctgacaagtcaggaatccattttaggacacctatgggcatattctgggaaaggagtcttaatcattgagaagcaaactctggagccagttccatggagggatct-----taaaggcacacaaccattggttttactgcacatgtgtcaccctctgaagccatcctgcAACTCTCACATGAGTCATCTGCTCTGAAGTAG--AACACAC-------CT-----ATTT-CTGGAAAAAGAGGATCAGACTGTCTTTTTCTGAGTGTGGTTGGCATCTA-CGGGATAGGCTTTCCTGGTTAAAAACTAGTTAGTTAAAAACTAGGAAGTTAAGAGTAGTACAATagaaagaa--agaatgaaagaaggagggagagaaagGAGTGGAGGTAGAA---AAATC--AGGAAAATCTTTCAGTGATAGAATAAAAATAAATCAAAGGAAAAG-AGAA---AAAATTAATGATTAGAGTAAAAGAAACTAGA---AATCACTTTAAAAAC i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16742602 499 + 184069350 at--atCatctaaatctcctacagacatgcat----t-tgaaaacccacc-aaaa-----------------gagctgacaagtcaggaatccattttaggacacctatgggcatattctgggaaagcagtcttcatcattgagaagcaaactctggagtcagttccatggagcgatct-----taaaggcacacagccattggttttactgcacatgtggcaccctctgaggccatcctgcaaatctcacacgagtcatctgctctgaagtag--agcacac-------ct-----attt-ctggaaatagaggattagactgtctctttctgagtgtggttggcatcta-tgggataggctttcctg---------------gtTAAAAACTAGGAAGTTAAGAGTAGTATAATagaaagaa--agaatgaaagaaggagg----gaaaggagtggaggtagaa---aaaTC--AGGAAAATCTTTCCATGATACAATAAAAATAAGTCAAAGGAAAAG-AAAA---AAAATTAATGATCAGAGTAAAAGAAACTAGA---AATAACTTTAAAAAC i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20791883 500 + 189454096 AT--ATCatctaaatctcttacagacatgcat----t-ttaaaacccacc-aaaa-----------------gagctgacaagtcaggaatccattttaggacacctatgggcatattctgggaaagcagtcttcatcattgagaagcaaactctggagtcagttccatggagcgatct-----taaaggcacacagccattggttttactgcacatgtggcaccctctgaggccatcctgcaaatctcacacgagtcatctgctctgaagtag--agcacac-------ct-----attt-ctggaaatagaggattagactgtctctttctgagtgtggttggcatcta-tgggataggctttcctg---------------gtTAAAAACTAGGAAGTTAAGAGTAGTATAATagaaagaa--agaatgaaagaaggagg----gaaagGAGTGGAGGTAGAA---AAATC--AGGAAAATCTTTCCATGATACaataaaaataagtcaaaggaaaagaaaaa---aaaattaatgatcagagtaaaagaaactaga---aaTAACTTTAAAAAC i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16379938 498 + 178775436 at--atcaTCTAAATCTCTTACAGACATGCAT----T-TTAAAACCCACC-AAAA-----------------GAGCTGAGAAGTCAGGAATCCATTTTAGGACGCCTATGGGCATATTCTGGGAAAGGGGTCTTCATCATTGAGAAGCAAACTCTGGAGTCAGTTCCATGGAGCGATCT-----TAAAGGCACACAGCCATTGGTTTTACTGCACATGTGGCACCCTCTGAGGCCATCCTGCAACTCTCACACGAGACATCTGCTCTGAAGTAG--AGCACAC-------CT-----ATTT-CTGGAAATAGAGGATTAGACTGTCTCTTTCTGAGTGTGGTTGGTATCTA-TGGGATAGGCTTTCCTG---------------GTTAAAAACTAGGAAGTTAAGAGTagtataatagaaagaa--agaatgaaagaaggagg----gaaaggagtggaggtagaa---aaatc--aggaaaatctttctgtgatacaataaaaataaatcaaaggaaaag--aaa---aaagttaatgatcagagtaaaagaaactaga---aataactttaaaaac i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19866403 497 - 48547382 AT--ATCatctaaatctcttacagacacgcat----t-ttaaaacccacc-aaaa-----------------aagctgacaagtcaggaatccattttaggacacctatgggcatattctgggaaaggggtcttcatcattgagaagcaaa--ctggagtcagttccatggagtgatct-----taaaggcacacaaccattggttttactgcacatgtggcaccctctgaggccatcctgcaactctcacacgagacatctgctctgaagtag--agcacac-------ct-----attt-ctggaaatcgaggattagactgtctctttctgagtgtggttggcatcta-tgggataggctttcctg---------------gtTAAAAACTAGGAAGTTAAAAGTAGTATAATagaaagaa--agaatgaaagaaggagg----gaaagGAGTGGAGGTAGGA---AAATC--AGGAAAATCTTTCCATGATACAATAAAAATAAGTTAAAGGAAAAG-AAAA---AAAATTAATGATCAGAGTAAAAGAAACTAGA---GATAACTTTAAAAAC i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21222793 510 - 190850796 atacatCATCAAACTCTCTTAAAGACATGCAG----TATTAAAAGCCATCAAAAA-----------------AAGCTGACAAGTCAAGTATCAATTTTAGGACACCTATGGGCATATTCTGGGAAAGGAGTCTTAACCATTGAGAAGAAAACTCTGGAGCCAACTCCATGGAGAGGTCT-----TAAAGACACATAACCGTTGGTTTTACTGCACATGTGGCATCCTCTGAAGCCATCCTGCAACTCTCACATGAATCATCTGCTCTGAAGCAG--AGCACAC-------CT-----ATTT-CTGGAAATAGAGGATTAGACTGTCTCTTTCTGAGTGTGTTCGGCATCTA-TGGGAT-GGTTTCCCTAGTAAAAAACTAGTTAGTTAAAAACTAGGAAGTTAAGAGTAGTGCAAT----agaa--agaatgaaagaaggagggagagaacagaatggaggtagaaaacaaatc--aggaaaa----tcagttatagaataaaaat-----aaaggaaaaa--------aagaTTAATTATCAGAGTAAAATAAACTATAAATAATAACTTTAAAAAC i calJac3.chr3 C 0 C 0 s mm10.chr5 49210661 447 + 151834684 at--ataatttaaaatttttaaaGACTTGTAT----TTTTTAAACACACA-CACACGTGTGTGTGTGTGTGTGCGCTAAGGAATCAGGAATGAATTGTAGGGTCCCTGAGGAAATATT-----------GTACTAGCCATTTACAAGAAGA------------TTCCATCTAGCCCACTAGTAATAAAGAGACACAGCCATTCTTTTTACCACCTGCGTGGAAGCC-CTGAAGCAGT----------------------TCATCTTTAGAGTAGGTAGGATACTGTGCTGCT-----GTTTCCTGGAAAT----GATTAGGGTGCATTTCTCTTGCCTCCATCTACATTTGTTGGGATTGCTTTCTCTG---------------GTCAAAAACTA-TAAGTTTATAGT------------------AGAATGAAAGAAAAA------GAAGAGAATTGCTTCAGTC------TC--TGGAA---CTTAAAGTCACAGA-------------AAAGGGAAAT-AG-A---AAAAGTGACTATCAGAGTAAAAGAGAGCAGTGATAGTAACTTGAAAAGT i mm10.chr5 I 1119 C 0 s canFam3.chr3 3800546 468 - 91889043 at--gaaatctaaatctcttacagatatatatattat-taaaaatccat--agaa-----------------aagctaataagccaggaattaatttcagaacacctatgggcatttactgggaaa--agtcttaatcactaagaagT----------GCCAGCT---------GGTCC-----TAAATAAACACAACCACTGGCCTAACCACACATATGGAATA--CTGAAGCCACTCCATATCT-----------------CCCTGAGGTAG--AGCACAC-------CTGTGTGATTC-ATAGAAATAGAAAATTAGTCTATCTCTTTCTGAATGTGA-------CCA-TGAGATGGGTTTCCCTGTTTAAAAACTAGTTAGTTAAAAACTAAGAAGTTAATAGTA---------AACGAAGTAGAATGGAAGAAAGAAG------AAGGAAAAGAGGGAGAT---AAATCTTTGGAAA-----TGAGTGTCataa-aaaaagaaacaaaagaaaaag-agaaaagaagattagtaatcagagtaaaataaagcaaaaatagtaacattaaaaat i canFam3.chr3 C 0 C 0 a score=32779.000000 s hg38.chr4_KI270790v1_alt 101081 9 + 220246 ATACATCAT s panTro4.chr4 21487637 9 + 193495092 ATACATCAT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21664922 9 + 198332218 ATACATCAT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20277175 9 - 85365473 ATACATCAT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16743101 9 + 184069350 GTACATCAT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20792383 9 + 189454096 GTACATCAT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16380436 9 + 178775436 atacatcat i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19866900 9 - 48547382 ATACATCAT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21223303 9 - 190850796 ATACATCAT i calJac3.chr3 C 0 C 0 s canFam3.chr3 3801014 9 - 91889043 aGGCATCAT i canFam3.chr3 C 0 I 1066 e mm10.chr5 49211108 0 + 151834684 C a score=635277.000000 s hg38.chr4_KI270790v1_alt 101090 311 + 220246 ATAGggccgggcgcggtggctcacgcctgtaatcctagcactttgggaggctgaggcgggcggatcacgaggtcagaagatcgagaccatcctggctaacacggtgaaaccccgtctctact-aaaaatacaaaaa----------aaaaaaaattagct-ggaatggtggtgggcgcctgtaggcccagctactcaggaggctgaggcaggagaatggcgtttacctgggaggtagagcttgcagtgagccgagatcacgccactgcactccagcctgggctacagggc-gagactccgcctcaaaaaaacaaaaaacaaaac s panTro4.chr4 21487646 315 + 193495092 ATAGggccgggcgtggtggctcatgcctgtaatcctagcactttgggaggctgaggcgggaggatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaaccccgtctctact-aaaaatacaacaa------caacaaaaaaaattagcc-ggcatggtggtgggtgcctgtaggcccagctactcaggaggctgaggcaggagaatggcgtttatctgggaggcagaacttgcagtgagccgagatcatgccactgcactccagcctgggctacagggc-gagactccgtctcaaaaaaaaaaaaaaaaaaaa i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21664931 322 + 198332218 ATAGggccaggcctggtggctcatgcctgtaatcccagcactttgggaggctgaggtgggcggatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaactccgtctctactaaaaaatacaaaaaaaaaaaaaaagaaaaaaattagcc-agtgtggtggttggtgcctgtagtcccagctactcgggaggctgaggcaggagaatggcatgaaccctggaggcagagcttgcagtgagcagagatggcgccactgcactccagcctgggtgacagagc-aagactccatctcaaaacaacaacaacaacaac i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20277184 316 - 85365473 ATAGggctgggcacggtggctcacacctgtaatcacagcactttgggagtccgaggcgggcagatcatgaggtcaggagatggagactgtcatggctaacacagtgaaaccccgtctctactaaaaaatacaaaaa-------aaaaaaaaaaattagctaggcatggtggtgagcacctgtaggcccagctactcaggaggctgaggcaggagaatggtgtgaacccgggaggcagagtttgcggtgagcagagatggcgccactgcactccagcctgggtgacagggc-aagactccgtctcaaaaaaaaaaaaaaaaaaaa i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16743110 301 + 184069350 ATAGggccgggctcggtggctcacgcctgtaatctcagcactttgggaggctgaggtgggcagatcacgaggtcaggagatcaagaccatgctggctaatacggtgaaattccgtctctactaaaaaataca--aa----------aaaaaaaaatagctgggcgtggtggtgggcacctgtagtcccagctacttaggaggctgaggcaggagaatggcatgaacctgggaggcagagtttgcagtgagcagagatagcaccactgcactccagcctgggcaacagggc-aaaactccgtctc--aaaaaaaaaa-------- i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20792392 302 + 189454096 ATAGggccaggctcggtggctcacgcctgtaatctcagcactttgggaggctgaggtgggcagatcacgaggtcaggagatcgagaccatgctggctaatacggtgaaattccgtctctactaaaaaatac---aa----------aaaaaaaaatagctgggcgtggtggtgggcacctgtagtcccagctacttaggaggctgaggcaggagaatggcatgaacctgggaggcggagtttgcagtgagcagagatagcaccactgcactccagcctgggcaacagggc-aaaactccgtctcaaaaaaaaaaaa-------- i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16380445 303 + 178775436 atagggccgggcgcagtggctcacgcctgtaatctcagcactttgggaggctgaggtgggcagatcacaagatcaggagatcgagaccatgctggctaatatggtgaaaccccgtctctactaaaaaatac---------------aaaaaaaactagccgggcgtggtggtgggcacctgtagtcccagctacttgggaggctgaggcaggagaatggcgtgaacctgggaggcggagtttgcagtgagcagagatagcaccactgcactccagcctgggcaacagggcaaaaactccatctcgaaaaaaaaaaata------ i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19866909 302 - 48547382 ATAGggccgggcgcggtggctcaagcctgtaatccctgcactttgggaggctgaggtgggcagatcacgaggtcaggtgatcgagaccatgctggctaatacggtgaaattccgtctctactaaataatac---------------aaaaaaaactagctgggcgtggtggtgggcacctgtagtcccagctacttaggaggctgaggcaggagaatggcatgaacctgggaggcggagtttgcagcgagcagagatagcaccactgcactccagcctgggcaacagggc-aaaactccgtctcaaaaaaaaaaaaaa------ i chlSab2.chr27 C 0 C 0 e mm10.chr5 49211108 0 + 151834684 C e calJac3.chr3 21223312 0 - 190850796 C e canFam3.chr3 3801023 1066 - 91889043 I a score=-210.000000 s hg38.chr4_KI270790v1_alt 101401 6 + 220246 aaaaaa s panTro4.chr4 21487961 6 + 193495092 aaatat i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21665253 6 + 198332218 aacaac i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20277500 2 - 85365473 aa---- i nomLeu3.chr20 C 0 C 0 s canFam3.chr3 3802089 6 - 91889043 aaaaat i canFam3.chr3 I 1066 C 0 e mm10.chr5 49211108 0 + 151834684 C e chlSab2.chr27 19867211 0 - 48547382 C e macFas5.chr5 20792694 0 + 189454096 C e rheMac3.chr5 16743411 0 + 184069350 C e calJac3.chr3 21223312 0 - 190850796 C e papAnu2.chr5 16380748 0 + 178775436 C a score=552.000000 s hg38.chr4_KI270790v1_alt 101407 6 + 220246 aaaCAT s panTro4.chr4 21487967 6 + 193495092 atatat i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21665259 6 + 198332218 aacaac i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20277502 6 - 85365473 aaTCAT i nomLeu3.chr20 C 0 C 0 s chlSab2.chr27 19867211 1 - 48547382 -----c i chlSab2.chr27 C 0 C 0 s mm10.chr5 49211108 6 + 151834684 AGACGT i mm10.chr5 C 0 C 0 s canFam3.chr3 3802095 6 - 91889043 aaGTAT i canFam3.chr3 C 0 C 0 e macFas5.chr5 20792694 0 + 189454096 C e rheMac3.chr5 16743411 0 + 184069350 C e calJac3.chr3 21223312 0 - 190850796 C e papAnu2.chr5 16380748 0 + 178775436 C a score=2503467.000000 s hg38.chr4_KI270790v1_alt 101413 770 + 220246 ATA----------------AAAGTAACAAATATTCTAGATACCAAAC------------------------------------------AATGAAACAGACAAAACCTGAAAACAAAGAATTGAGGAGAAAA----ATAAAGTACATCTCTAAAATGGAAGCTATTcctgc-cccatccctaaatctgcttccata----------------ttttagatgactgcagttttattctttgagaaggcaaaagtctaggaatcattctttactcctcttg-ttctctcacaccccacatccaattttccaggaaatcttgttgattctatcttgaggctctt--------tctataatgcaaccattctgcaatctctccaaggccaccactttgctctgagcaatccttgtctcttgcctgaattgtgaaaataccctatgaatttgtcctctggtttctatccatgccctttatggtctattctgaacaca---gaa--acaaatgtgattcttt-taaaggtaggtcagaccatgtcatgcctctgctttagcctccaatagct--ccctatttctttgagc--a-aaaaaacatacaaggccctacaagc-tctggctccccagtcactgcccttgtctcagctccttctgcccttcctcttgcatctt--------------------------------------catcatgctccagccttaaagctttgcacttagggtc-----------------tcccattccctgaagtgttcttc-ctctaatgtttttccaagactgataccattatcttcttcaaattttgactcaaatcttacctttatctctccacctgtctcacaattgcacccttcaatccttcccctcccacccacctcttctgtgcatgactgata s panTro4.chr4 21487973 786 + 193495092 atatatatatatatatataAAAGTAACAAATATTCCAGATACCAAAC------------------------------------------AATGAAACAGACAAAACCTGAAAACAAAGAATTGAGAAGAAAA----ATAAAGTACATCTCTAAAATGGAAGCTATTcctgc-cccatccctaaatctccttccata----------------ttttagatgactgcagttttattctttgagaagacaaaagtctaggaatcattctttactcctcttg-ttctctcacaccccacatccaattttccaggaaatcttgttgattctatcttgaggctctt--------tctataatgcaaccattctgcaatctctccatggccaccactttgctctgagcaatccttgtctcttgcctgaattgtgaaaataccctatgaatttgtcctctggtttctatccatgccctttatggtctattctgaacaca---gaa--acaaatgtgattcttt-taaaggtaggtcagaccatgtcatgcctctgctttagcctccaatacct--ccctatttctttgagc--a-aaaaaacacacaaggccctaaaagc-tctggctccccagtcactgcacttgtctcagctccttctgcccttcctcttgcatctt--------------------------------------catcatgctccagccttaaagctttgcacttagggtc-----------------tcccattccctgaagtgttcttc-ctctaatgtttttccaagactgataccattaccttcttcaaattttggctcaaatcttacctttatctctccacctgtctcacaattgcacccttcaatccttcccctctcacccacctcttctgtgcatgactgata i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21665265 777 + 198332218 aaa-----------acaTAAAAGTAACAAATATTCTAGATACCAAAC------------------------------------------AATGAAACAGACAAAACTTGATAGCAAAGAATTGAGAAGAAAA----ATAAAGCacatttctaaaatggaagctattcctgc-ctcatccctaaatctgcttccata----------------ttttagacgactgcagttttattctctgagaagacaaaagtctaggaatcattctttactcctcttg-ttctctcacaccccacaaccaattttccaggaaatcttgttgattctatcttgaggctctt--------tctagaatgcaaccattctgcaacctctccatggccaccactttgctctgagcaatccttgtctcttgcctgaattgtgaaaatagcctatgaatttgtcctctggtttctatccttgccctttatggtctattctgaataca---gaa--acaaatgtgattcttt-taaaagtaggtcagaccatgtcatgcctctgctttagcctccaatagct--ccctatttctttgagcaaa-aaaaaacacacaaggccctacaagt-tctggctccccagtcactgcccttgtctcagctccttctgcccttcctcttgcatttt--------------------------------------catcatgctccagccttaaagctttgcacttagggtc-----------------tcccattccctgaagtgttcttc-ctctaatgtttttccaagcctgataccatcaccgtcttcaaattttggctcaaatcttacctttatctgtccacatctttcacgattgcacacttcaatccttcccctctcacctacctcttctgtgcatgactgata i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20277508 770 - 85365473 ATA----------------AAAGTAACAAATATTCTAGATACCAAAC------------------------------------------AATGAAATAGACAAAACTTGATAACAAAGAATTGAGAAGAAAA----ATAAAGTACATCTCTAAAATGGAAGCTATTcctgc-cccatccctaaatctgctttcata----------------ttttagatgactgcagttttattctttgagaggacaaaagtctaggaatcattctttactcctctgg-ttctctcacaccccacatccaattttccaggaaatcttgttgattttatcttgaggctctt--------tctataatgcaaccattctgcaatctctccatggccaccactttgctctgagcaatccttgtctcttgcctgaattgtgaaaataccctatgaatttgtcctctggtttctatccttgccctttatggtctattctgaataca---gaa--acaaatgtgattcttt-taaaagtaggtcagaccatgtcatgcctctgctttagcctccaataact--ccctatttctttgagc--a-aaaaaacacacaaagccctataagc-tctggctccccagtcactgcccttgtctcaactccttctgcccttcctctcgcatctt--------------------------------------catcatgctccagccttaaagctttgcacttagggtc-----------------tcccattccctgaagtgttcttc-ctctaatgtttttccaagcctgataccattaccttcttcaaattttggctcacatcttacctttatctgtccacatctttcacgattgcacccttcaatccttcccctctcacccacctcttctgtgcatgactgatg i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16743411 777 + 184069350 ---------------------aataacaaaTATTCTAGATACCAAAC------------------------------------------AATGAAATAGACAAAACTTGAAAACAGATAATTGATAAGAAAA----ATAAAGTACATCTCTAAAATGGAAGCTATTcctgc-cccatcccttaatctgcttccata----------------ttttagatgactgctgctttattctttgagaggacaaaagtctaggaatcattctttactcctcttgtttctctcacatcccacatccaattttccaggaaa---tcttgattctatcttgaggctctt--------tctataatgcaaccattctgcaatctttccatggccaccactttgctc--aacaatccttgtctcttccctgatttgtgaaaatagcctgtgaatttgtcctctggtttctatccttgccctttacagtctattctgaacaca---gaa--acaaatgtgattcttt-taaaagtaggtcagaccatgtcatgcctctgctttggcctccaatggct--ccctatttctttgag---a-aaaaaccacacaaggccctacaagc-tctggctccccagtcactgcccttgtctcagctccttctgcccttcctcttgcatctt--------------------------------------catcatgctccagccttcaggctttgcacttagggtctcctattccctgaggtgtcctattccctgaggtgttcttc-ctctaatgtttttccaagtctgatatcattaaccgcttcaaattttggctgaaatcttacttttatccgaccacatctttcatgattgcacccttcaatccttcccctctcactcacctcttctgtgcatgactcata i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20792694 779 + 189454096 ---------------------aataacaaaTATTCTAGATACCAAAC------------------------------------------AATGAAATAGACAAAACTTGAAAACAGATGATTGATAAGAAAA----ATAAAGTACATCTCTAAAATGGAAGCTATTcctgc-cccatcccttaatctgcttccata----------------ttttagatgactgctgctttattctttgagaggacaaaagtctagtaatcattctttactcctcttgtttctctcacatcccacatccaattttccaggaaa---tcttgattctatcttgaggctctt--------tctataatgcaaccattctgcaatctctccatggccaccactttgctctgaacaatccttgtctcttccctgatttgtgaaaatagcctgtgaatttgtcctctggtttctatccttgccctttacagtctattctgaacaca---gaa--acaaatgtgattcttt-taaaagtaggtcagaccatgtcatgcctctgctttggcctccaatggct--ccctatttctttgag---a-aaaaaacacacaaggccctacaagc-tctggctccccagtcactgcccttgtctcagctccttctgcccttcctcttgcatctt--------------------------------------catcatgctccagccttcaggctttgcacttagggtctcctattccctgaggtgtcctattccctgaggtgttcttc-ctctaatgtttttccaagtctgatatcattaactgcttcaaattttggctgaaatcttacttttatccgaccacatctttcatgattgcacccttcaatccttcccctctcactcacctcttctgtgcatgactcata i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16380748 770 + 178775436 ata----------------ataataacaaatattctAGATACCAAAC------------------------------------------AATGAAATAGACAAAACTTGAAAACAGAgaattgataagaaaa----ataaagtacatcTCTAAAATGGAAGCTATTCCTGC-CCCATCCCTTAATCTGCTTCCATA----------------TTTTAGATGACTGCTGCTTTATTCTTTGAGAGGACAAAAGTCTAGGAATCATTCTTTACTCCTCTTG-TTCTCTCACATCCCACATCCAATTTTCCAGGAAATCTTCTTGATTCTATCTTGAGGCTCTT--------TCTATAATGCAACCATTCTGCAATCTCTCCATGGCCACCACTTTGCTCTGAACAATCCTTGTCTCTTCCCTGAATTGTGAAAATAGCCTGTGAATTTGTCCTCTGGTTTCTATCCTTGCCCTTTACAGTCTATTCTGAACACA---GAA--ACAAAtgtgattcttt-taaaagtaGGTCAGACCATGTCATGcctctgctttggcctccaaTGGCT--CCCTATTTCTTTGAGC--A-AAAAACTACACAAGGCCCTACAAGC-TCTGGCTCCCCAGTCACTGCCCTTGTCTCAGTTCCTTCTGCCCTTCCTCTTGCATCTT--------------------------------------CATCATGCTCCAGCCTTCAGGCTTTGCACTTAGGGTC-----------------TCCTATTCCCTGAGGTGTTCTTC-CTCTAATGTTTTTCCAAGTCTGATACCATTAACTTCTTCAAATTTTGGCTCAAATCTTACCTTTATCTCACCACATCTTTCATGATTGCACCCTTCAATCCTTCCCCTCTCACTCACCTCTTCTGTGCATGACTCATA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19867212 767 - 48547382 aaa----------------aaaaaaacaaaTATTCTAGATACCAAAC------------------------------------------AATGAGATAGACAAAACTTGAAAACAGAGAATTGATAAGAAAA----ATAAAGTACATCTCTAAAATGGAAGCTATTcctgc-cccatcccttaatctgcttccata----------------ttttagatgactgctgctttattctttcagaggacaaaagtctaggaatcattctttactcctcttg-ttctctcacatcccacaaccaattttccaggaaa---tcttgattctatcttgaggctctt--------tctataatgcaaccattctgcaatctttccatggccaccactttgctctgaacaatccttgtctcttgcctgaattgtgaaaatagcctgtgaatttgtcctctggtttctatccttgccctttacagtctattctgaacaca---gaa--acaaatgtgattcttt-taaaagtaggtcagaccatgtcatgcctctgctttggcctccaatggct--ccctatttctttgagc--a-aaaaaccacacaaggccctacaagc-tctggctccccagtcactgcccttgtctcagctccttctgcccttcctcttgcatctt--------------------------------------catcatgctccagccttcaggctttacacttagggtc-----------------tcctattccctgaggtgttcttc-ctctaatgtttttccaagtctgataccattaactgcttcaaattttggctcaaatcttacctttatccgaccacatctttcatgattgcacccttcaatccttcctctctcactcacctcttctgtgcatgactcata i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21223312 768 - 190850796 ----------------ATGAAAGCAACAAATACTCTAGATACCAAAC------------------------------------------AATGAAACAGACAAAACTTGAAAACAAGGAATTGAGAAAAAAA----ATAACGTGCATATCTAAAATGGAAGCCATTcctgcacccatcccttaatttgcttccata----------------tttttgatgactgaagttttattctttgagagaacaaaactctaggaatcattctttactcctcttt-tgctctcacaccccatattcaattttccaggaaatcttgttgattctatcttgaggttctt--------tctataatgcaaccattctgcatttcctccatggccaccattttgctgcgagcaatccttgtctcttgcctgaattgttaaaatagcctatgaattggtcctctggtttctatccttgcccttgatggtctattttgaacaca---aaa--acaaatgtgattctttaaaaaagtaggtcagaccatgtcatgcatctgctttagcctccaatggtt--ccctatttctttcagc--a-aaaaaacacccaaggccctacaagc-tctggctccccagtcaccacccttgtctcagctccttctgccctccctctcatgtttt--------------------------------------catcatccttcagccttaaggctttgcacttagggtc-----------------taccactccctgaagtgttcttc-ctc---tgtttttccaaagctgacatcattaccttcttcaaattttggctcaaatcttccctttatctgtccaca-ctttcatgattgtatccttcaatctttcctctccgacacacctcttctgtgcatgattgata i calJac3.chr3 C 0 I 316 s mm10.chr5 49211114 722 + 151834684 -------------------AAGAAAACAATGAGtataaatattaaac------------------------------------------aataaaatagataaaaatttttaaaaaGTGAT------------------------AACTCTACAATGAATAGTCCCTTTCC-CCCAGCCCTCCTTCTGCTTCAAAAAAAAAAAAAAAACCACCACAAAACaatatcaattccatcctctga-atgtcaaagatctagaaatcacacttgacccctctt--ttctgccatatcacatatccaatagatcatg-gatctcactgtctctacct-----ccctttgttatgctctgtaatccatttatttttaatcccttacactgctaccaagttggtttgaataaccattg--cctggcctagattgtggcactgctctacaaatatgtcttctgttttttagcttcactatgtgtggtcaattctaaatgca---AAA--CCTTAC---ACTCTTT-------------------------------------GCTTCCAAAACCTACCCCAATTACTT--AGC--A-TAACATTATGCCAGAATTTGTAACT-CTTGGCTTCCAAGTTATCACCCTAGTTTCAACATTTCTCCCTCTCCTTGTTGTTTTCTAGAGCAGGGATAATCCCAGTCTCTTCCTA---------CAACATACTTGATTCATAA---TATGCTCCTGA---------------------ACCTGTACTCATGAATACCTTTCACTATCATGT-----AAAGGCCATTGCCTTT--CCCCTTCTAATGTTGGCACAAACATTAGTAATTTCTA---------TTAATGACTAC---CTTTAATGCTCTTCCAACTACCTA-CTCCACTTTACACAAGTG--- i mm10.chr5 C 0 C 0 s canFam3.chr3 3802101 799 - 91889043 ----------------ATGAAAGCAATAAA---CTTAGATACCAAACAGACTTATTATGCCATGATCAAAAAAACCCCAAAAACAAATAAACAAAAGGAACAAAAAGTAAAGAATAAGAATTAGGAAAAGAAGCAGATAAAGTacatctccaaaacagatgtttttc--ac-ccaccccctccatctgtccccaca----------------tttgaggtaa--acaattccattcttctagagaacaaaactataggattcatcctttaccctacttt-ttctttcacaccctatatccaatatgccagaagatcttgttg-------------gctctt--------tctataatccaaccacttt---atctctccactgtcatcaccttgatttaagta----ttatctcttgcctgaattgataaagtagcccatgaattggtcctttga-ctctacccttgccctttacagttgattacaagcatagctgaattacaaatgtaattattt-aagaagtaggttagatcatgtcatgcctccactttaatcttcaagagat--ccctgttt-----aac--ataaaaatcatgcaaagccctagaaatatctggttccccagttatcacctgaacctcagttacttttactcttcctcttgcttacttgggccgtcatgacctctgacggttcctccaacagactcggcatgttccagctttaaggctttgtacttgcggct-----------------tcttgttctgtggaatgtatttt-ccccca--tttttataaagctaacaccttcaccatcttcaaattttt-cttaaatttt--------------------------aatgctacctttcattctcccctcccttttaacctctactctgtgatactaatc i canFam3.chr3 C 0 C 0 a score=2696801.000000 s hg38.chr4_KI270790v1_alt 102183 836 + 220246 ctctttattaccatctaacacatc-tccagactgc-------tcttccctcttgagaatgtcagcaccaccggtgcagaagtctttgtctgaattgtttaccaatgtgttgcaattgtctacaacaggtcctgaa---------cacatccct-gtgtctctattagtgtcctggggctgtcgtaacaaattaccacaaac-------------------agagatttactt-tctcttcatgttagaggttatatgtctaaaatcaaggtgtcagcaggaccaaactttctctgaaatctgtgg-ggagactccttccttgactctttctagtctct-gtggtttgctggcaatccgagatttttctcggcttgtagttgtgtcattcacatctctgggcctccatagtcacatagtgttcctcttgtgtgtctctgcgtttcttcttctcttcttgtaaggacacgagtcatactgaattaacagcccatcctacttcagtatggcctcatcttaatacgtgttacatctaattaatgaattagc----taattgatgaccttatttataaataagattacatcttgaagtgctgtcag----gacttcaacatatctt--tttag----agaacaaaattcaccccataacagttccccaaaatatttatttaaatgaatcaatGAAGGTAC-TAAGTGATGTAAGTTCTTAAAAACATTCTTTGGCCAAGGGCGATGTGGGAAGTCCCTTACTATAG--TTAGTACATCTGAGTGAATACACAAATTAGTAAGACAAATGTAGCTGCCTTGATAA-------TGAGTTTA-TAAGTATTTTTACCA-AAACTGTCATTTGATAACAA--ATTAAAAGGTTGTGTACTGTGCCTTCTTTCA s panTro4.chr4 21488759 835 + 193495092 ctctttattaccatctaacacatc-tccagactgc-------tcttccctcttgagaatgtcagcaccaccggtgcagaagtctttgtctgaattgtttaccaatgtgttgcaactgtctacaacaggtcctgaa---------cacatccct-gtgtctctattagtgtcctggggc-gtcgtaacaaattaccacaaac-------------------agagatttactt-tctcctcatgttagaggttagatgtctaaaatcaaggtgtcagcagggccaaactttctctgaaacctgtgg-ggagactccttctttgactctttctagtctct-gtggtttgctggcaatctgagatttttctcggcttgtagttgtgtcattcacatctctgggcctccatagtcacatagtgttcctcttgtgtgtctctgcgtttctttttctcttcttgtaaggacaccagtcatattgaattaacagcccatcctacttcagtatggcctcatcttaatacgtgttacatctaattaatgaattagc----taattgatgaccttatttataaataagattacatcttgaagtgctgtcag----gacttcaacatatctt--tttag----agaacaaaattcaccccataacagttccccaaaatatttatttaaatgaatcaatGAAGGTAC-TAAGTGATGTAAGTTCTGAAAAACATTCTTTGGCCAAGGGCGATGTGGGAAGTCCCTTACTATAG--TTAGTACATCTGAGTGAATACACAAATTAGTAAGACAAATGTAGCTGCCTTGATAA-------TGAGTTTA-TAAGTATTTTTACCA-AAACTGTCATTTGATAACAA--ATTAAAAGGTTGTGTACTTTGCCTTCTTTTA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21666042 848 + 198332218 ctctttattaccatctaacacatc-tccagattgc-------tcttcccttttgagaatctcagcacctccggtgcagaagtctttgtctgaattgtttactgatgtgttgcaagggtctacaacaggtcctgaa---------tacatccct-gtgtctgcattagtgtcctggggctgtcgtaacaaattaccacaaac-------------------agagatttactt-tctcctcatgttagaagttagatgtctaaaatcaaggtgtcagcagggccaacctttctctgaaagctgtgg-ggagactccttccttgcctcttcctagtctct-gcggtttgctggcaatcctagatttttctcggcttgtagttatgtcattcagatctctgggcctctatagtcacatagtgttcctcctgtgtgtctctgcatttcttcttctcttcttataaggacaccagtcatattgaattaacagcccaccctgcttcagtaaggccttatcctaatacatgttacatctaattaatgaattagctaattaattaatgaccttatttataaataagattacatcttgaagtgctgtcag----gacgtcaacatatctt--tttag----agaacaaaattcaccccataacagttccccaaaatatttatttaaatgaatcaatGAAGGTAC-AAAGTGATGTAAGTTCTTAAAAACATTCTTTGGCCAAGGGCAATGTGGGAAGTCCCTTACTATAG-TTTAGTACATCTGAGTGAATACACACATTAGTAAGACAAATGTAGCTGCCTTGATAGTTACGTTTGAGTTTA-TAAGTATTTTTACCA-AAACTGTCATTTGATAACAA--ATTAAAAGGTTGCGTATTGTGCCTTCTTTTA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20278278 834 - 85365473 ctctttattaccatctaacacatc-tccagattgc-------tcttccctcttgaaaatgtcagcacctctggtgcagacgtctttgtctgaattgtttaccgatgtgttgcaagtgtctacaacaggtcctgaa---------cacatccct-gtgtctgtattagtgtcctggggctgtcataacaaattacgacaaac---------------------agatttactt-tctcctcatgttagaagttagatgtctaaaatcaaggtgtcagcagggccaacctttcgctgaaacctgtgg-ggagactccttccttgcctcttcctagtctct-gtggtttgctggcaatcctagatttttcttggcttgtagttgtgtcattcagatctctaggcctccatagtcacatagtgttcctcttgtgtgtctctgtgtttcttcttctcttcttgtaaggacaccagtcatattgaattaacagcccaccctacttcagtatggcctcatcgtaaaatgtgttatatctaattaatgaattagc----taattaatgaccttatttataaataagattacatcttgaagtgctgtcag----gacttcaacatatctt--tttag----agaacaaaattcaccccataacagttccccaaaatatttatttaaatgaatcaatGAAGGTAC-GAAGTGATGTAAGTTCTTAAAAACATTCTTTGGCCAAGGGAGATGCGGGAAGTCCCTTACTATAG--TTAGTACATCTGAGTGAATACACAAATTACTAAGACAAATGTAGCTGCTTCGATAG-------TGAGTTTA-TAAGTATTTTTACCA-AAACTGTCATTTGATAACAA--ATTAAAAGGTTGTGTATTGTGCCTTCTTTTA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16744188 844 + 184069350 ctctttattaccatctaacacatc-tccagattgc-------tcttccctcttgagaatgtcggcaccaccggtgcagaagtctttgtctgaattgtttactgatgtgttgcaagtgtctacaacaggccctgaa---------cacatCCCT-GTGTCTCTACCagtgtcctggggctgtcgtaacaaatcaccacaaac---------------------agatttactt-tctcctcatgttagaggttagatgtctaaaagcgaggtgtcagcagggccaaccttcctctgaaacctgtgg-ggagactccttctttgcctcttcctagtctct-gtggtttgctggcagttctagatttttctgggcttgcagttgcatcattcagatctctgggcctccatagtcacatagtgtccctcctgcgtgtctctgcatttcttcttctcttcttgtaaggacaccagtcatacgaaattaacagcccaccctgcttcagtatggtctcatcttaatacatgttacatctaattaatgaattagctaattaattaatgatcttatttataaataagattacatcttgaagtactgtcag----gacttcagcatatctt--tttag----agaacaaaattcactccaCGATAGTTCCCCGAAATATTTATTTAAATGAATCCATGAAGGTAC-AAAGTGACAC--GTTCTTAAAAATATTCTTTGGCCAAGGGCGATGTGGGAGGTCCCTTACTAGAG-TTAAGTACATCTAAGTGAATACACATATTAGTAAGACAAATGTAGCTGCCTTGATAGTTACCTTCGAGTTTA-TAAGTATTTTTACTA-AAACTGTCATTTGATAAAAA--ATTAAAAGGTTGTGTACTGTGCCTCCTTTTA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20793473 844 + 189454096 ctctttattaccatctaacacaTC-TCCAGATTGC-------tcttccctcttgagaatgtcggcaccaccggtgcagaagtctttgtctgaattgtttactgatgtgttgcaagtgtctacaacaggccctgaa---------cacatCCCT-GTGTCTCTACCagtgtcctggggctgtcgtaacaaatcaccacaaac---------------------agatttactt-tctcctcatgttagaggttagatgtctaaaagcgaggtgtcagcagggccaaccttcctctgaaacctgtgg-ggagactccttctttgcctcttcctagtctct-gtggtttgctggcagttctagatttttctgggcttgcagttgcatcattcagatctctgggcctccatagtcacatagtgtccctcctgcgtgtctctgcatttcttcttctcttcttgtaaggacaccagtcatacgaaattaacagcccaccctgcttcagtatggtctcatcttaatacatgttacatctaattaatgaattagctaattaattaatgatcttatttataaataagatcacatcttgaagtactgtcag----gacttcaacatatctt--tttag----agaacaaaattcactccaCGATAGTTCCCCGAAATATTTATTTAAATGAATCCATGAAGGTAC-AAAGTGACAC--GTTCTTAAAAATATTCTTTGGCCAAGGGCGATGTGGGAGGTCCCTTACTAGAG-TTAAGTACATCTAAGTGAATACACATATTAGTAAGACAAATGTAGCTGCCTTGATAGTTACCTTCGAGTTTA-TAAGTATTTTTACTA-AAACTGTCATTTGATAAAAA--ATTAAAAGGTTGTGTACTGTGCCTCCTTTTA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16381518 844 + 178775436 CTCTTTGCTACCATCTAACAAATC-TCCAGATTGC-------TCTTCCCTCTTGAGAATGTCGGCACCACCGGTGCAGAAGTCTTTGTCTGAATTGTTTACTGATGTGTTGCAAGTGTGTACAACAGGCCCTGAA---------CACATCCCT-GTGTCTCTACTAGTGTCCTGGGGCTGtcgtaacaaatcaccacaaac-------------------agAGATTTACTT-TCTCCTCATGTTAGAGGTTAGatgtctaaaatcaaggtgtcagcagggccaacCTTTCTCTGAAACAC-----TGAAACTCCTTCCTCGCCTCTTCCTAGTCTCT-GTGGTTTGCTGGCAGTTCTAGATTTTTCTGGACTTGCAGTTGTGTCATTCAGATCTCTGGGCCTCCACAGTCATATAGTGTCCCTCCTGCATGTCTCtgcatttcttcttctcttcttgtaaggataccagtcatattaAATTAACAGCCCATCCTGCTACAGTATGGCCTCATCTTAATACATGTTACATCTAATTAATGAAttagctaattaattaattatcttatttataaataagattACATCTTGAAGTACtgtcag----gacttcaacatatctt--tttag----aGAACAAAATTCACTCCATGATAGTtccctgaaatatttatttaaatgaatccACGAAGGTAC-AAAGTGACACAAgttcttaaaaatattctttggcCAAGGGCGATGTGGGAGGTCCCTTACTAGAG-TTAAGTACATCTAAGTGAATACACATATTAGTAAGACAAATGTAGCTGCCTTGATAGTTACCTTCGAGTTTA-TAAGTATTTTTACTA-AAACTGTCatttgataaaaa--attaaaaggttgtGTATTGTGTCCCCTTTTA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19867979 848 - 48547382 ctctttattaccatctaacacatc-tccagattgc-------tcttccctcttgagaatgtcggcactaccggtgcagaagtctttgtctgaattgtttactgatgtgttgcaagtgtctacaacaggccctgaa---------cacatccct-gtgtctctactagtgtcctggggctgtcgtaacaaatcaccacaaac-------------------agagatttactg-tctcctcatgttagaggtcagatgtctaaaatcaaggtgtcagcggggccaacctttctctgaaacctgtgg-agagactccttccttgcctcttcctagtctct-gtggtttgctggcagttctagatttttctgggcttgcagttgcgtcattcagatctctggacctccacagtcacatagtgtccctcctgcgtgtctctgcatttcttcttctcttcttgtaaggacaccagtcatattaaattaacagcccaccctgcttcagtatggtctcatcttaatacatgttacatctaattaatgaattagctaattaattaatgatcttatttataaataagattacatcttgaagtactgtcag----gacttcaacatatctt--tttag----agaataaaattcactccatgatagttccccgaaatatttatttaaatgaatCCATGAAGGTAC-AAAGTGACACAAGTTCTTAAAAACATTCTTTGGCCAAGGGCGATGTGGGAGGCCCCTTACTAGAG-TTAAATACATCTAAGTGAATACACACATTAGTAAGACAAATGTAGCTGCCTTGATACTTACCTTCGAGTTTA-TAAGCATTTTTACCA-AAACTATCATTTGATAAAAA--ATTAAAAGGTTGTGTGTTGTGCCTCCTTTTA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21224396 840 - 190850796 ctctttattaccatctaacacatc-tccatattgc-------tctttcctcttgagaatgtcagcaccatcagggcagaagtctttgt----attgtttattgatgtgttacaagtgtctacaacaggtcctgaa---------cacgtccct-gggtctgcattagtgtcctagggctgtcataacagattaccacaaac----------------aacagagatttactt-tctcctcgtgttagaggttacatgtttaaaatcgaggtgtcagcagggccaaccttgcgctgaaacctgtgg-ggagactctttccttgcctcttcctag--tct-gtggtttgttggcaattcctgatttttctccgcttgtagttgcctcattcagatctct--gcctctgtagtcacgtggtgttcctcctgtatgtctttg---tctttcttctcctcttgtaagaacaccagtcatatttaattaacagcccaccctgcttcagtatgacctcatcttaatacgtgtgacatttaattaatgaattagctaattaattaatgatcttatttataaataagattacatcttaaagtgctgtcag----gacttcggcatatctt--tttag----a-aacaaaattagccacataacagttccccaaaatatttatttaattgaataaatGAAGGTAC-GAAGTGACACAATCTCTTAAAAATATTCTTTGGCCAAGGGCGATGTGGGAGGTCCCTTACTACAC-CTTAGTGCATCTGAGAGAATACACACATTAGCTAGAAAAATGTAGCTGCCTTGATAGTCACTTCTGAGTTTATTAAGTATTTTTACCA-AAACTGTTCTTTGATAAAAT--ATTAAAAGGTTGTGTATTGTGCATTCTTTTA i calJac3.chr3 I 316 C 0 s mm10.chr5 49211836 742 + 151834684 ---CTTATAACAATATAGCAC---------ACTGC-------TCT---------GGAACGTC----------------CAGCATGTGTCTGCAAAG----------------ACACGGCCACAGCA-GTCCTGAGAGATTGGTTCACAGTGCT-GTG--TGAACCaatctctcagggctgccataaaaaatcttcacaagccaatggct--ccaaatagtatagattttcctacctcactgttttacaggtaaga------------gtatgttagagggactgaccttcctctggtgtctgcaacagagatctcttccttgctttcttctgactatg-gtagttgatcaaca-tcctcgatactccttggatttcagttgcctaattctcaaatgcattcctt-----ttccattgcattctgcgtg-gtgactctg-----cttcttctcatc-----aggtcactagtcagacaccaccaagggtccaaagtactttacattgatgtaatctt-----------CATATGACAGATGTATTA---TATTAACTAATGACCCAGTGATCATGTGATGTCATAT------GCTCTGGCA-----------AGCAGAACTTTGTTTAGGGGAAGAACAAAAT--GTCCCACAA----TTCCTAAAATGTT--TTTAATGAAACAAGTTAAGGCACAAAAGTGGCACATGATCATAAAAATGTATTTTTTTCTGGGAGTACTTTGAGAGACATTTCCTTAGT-TAAAGCAGATCTGAACGGGTAGGCCTG-CAGTGAGATGGACCTTACTGTCTTTAATGCTCCCTTTG-------TTGGTCAATTTACAG-AAAAGATCTTGTTACAATAAATATTACAAGG-----------------TATTA i mm10.chr5 C 0 C 0 s canFam3.chr3 3802900 816 - 91889043 ctctttattaccatctaaaatattgtccaatttacttgtttttcctccctcttaagaatataaaccccacccatgcagaaatcttagtttgtgtgttttactggtgtatttcaaatgtctacaatagttccagga---------cacgttgttggtgcCTCTATTAgt----------tgccatgacaa----ccacaaac---tgggtgatttaaaataacagaaatattg-cctcatacttctggaggctagatgcctgaaatcaaggtgtcagcagatacatgctccc-ctgaaactgtagg-aaagactctttcctcgtctcttgatagcttctggtggtttgctgataatctttatcattccttggtttgtag------cacttcaatctct--atctccatcatcacatcatctcctctctctgtgtctctg----tctgtgtctcttc---taaagacaacagtcatactggattatgacctcaccttg----actactacttta-----------gttatatctaattatttgatc-------taattaatggccctattttcaaataagattacattctgaggtactggcagtccagacttcaacatatctt--ttggg----gagacaaaatccatcccataaAATTGTCCCTAAATATTT-TTTAAGTGAATCAAAGAAAGTAC-AGGGTG----------TTAGAAATATTCTTTGGCTGATGACGATTTGGGAGGTCCCTTACTATGGTTTAAGTATATCTGAGTGAATAGACCCATTAAAAAGGCAAATAAAGTTGCCTTGATAGTTACTTTTGAGTTTG-TAAGTATTCTTACCATATATCATTTTTTGATAA-AC--ACAAAATCATTGTGTATTATTCCTTCTCTTA i canFam3.chr3 C 0 I 655 a score=20808.000000 s hg38.chr4_KI270790v1_alt 103019 6 + 220246 CCATGG s panTro4.chr4 21489594 6 + 193495092 CCATGG i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21666890 6 + 198332218 CCATGG i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20279112 6 - 85365473 CCATGG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16745032 6 + 184069350 CCATGG i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20794317 6 + 189454096 CCATGG i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16382362 6 + 178775436 CCATGG i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19868827 6 - 48547382 CCATGG i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21225236 6 - 190850796 CCATGG i calJac3.chr3 C 0 C 0 s mm10.chr5 49212578 6 + 151834684 ATGTGA i mm10.chr5 C 0 C 0 e canFam3.chr3 3803716 655 - 91889043 I a score=2409181.000000 s hg38.chr4_KI270790v1_alt 103025 699 + 220246 TTTTACATTACAAAAT----AGA----GTAATTTCT------------AAAATGTAAATATCAATAAATCATAAGAAAGTAAAATTCATTATTAAATAAAGTTTTACAAAACATACTGTCATCCTG-------TAGTCCCTCTGCTATGAGA--ATCACAGAGAAGTGGGTCATTGTTTCAGAAAAGAATATGGCAATAAAAGTGAATTTAAATATTATGT-CAAAGAGGAAAAACACCTCTTTGTG-TTTTTA--------------------------------------------------------------------------------------------ATATGTCAATCATTGCTGCATTTTTTATTAGAGGACAC--GTTTTCCTTTAATTTCCCTAATGTGTTATAGCTTTATTCCTAAACCACATGCTACCATGATTCCTTTGTGTAATTTtaagtaataaatcataaatgaatcataaa----caaattatagaataatTATTCTGCTCCAGTGCTCACAATGATTTTCCTGCTTTTTACTTTAATGTCTCCTATTCCTCCTTAATCCAATATTTATATTTATGACAAGCACCAGTTTTCAATCAAGAGAAAAGCTTC-----TGTGAAGTTGGGATTAGAGAATGTTTTATTCCACCCTCTATTGTC-----------------------TAAATAAACATGTTCAGAAATTAATCTCCTCCTTTTTATGGATCTGGGCTGTTTCAAACACCCCCAGGCAAGAAGAGGAGATCTCGCTTCTACTTCTGATCATTTGTTTTAAACTCTGTCTTTGAAATTAGCAAAATCCTACAGGGACTCAAA s panTro4.chr4 21489600 792 + 193495092 TTTTACATTACAAAAT----AGA----GTAGTTTTT------------AAAATGTAAATATCAATAAATCATAAGAAAGTAAAATTCATTATTAAATAAAGTTTTACAAAACATACTGTCATCCTG-------TAGTCCCTCTGCTATGAGA--ATCACAGAGAAGTGGATCATTGTTTCAGAAAAGAATATGGCAATAAAAGTGAATTTAAATATTATGTTCAAAGAGGAAAAACACCTCTTTGTG-TTTTTATTTAGTttattattattattattattattattattattatactttaagttttagggtacatgtgcacattgtgcaggttagttGTGTTTTTAATATGTCAATCATTGCTGCATTTTTTATTAGAGGACAC--GTTTTCCTTTAATTTCCCTAATGTGTTATAGCTTTATTCCTAAACCACATGCTACCATGATTCCTTTGTGTAATTTTAAGTAATAAATCATAAATGAATCATAAA----CAAATTATAGAATAATTATTCTGCTCCAGTGCTCACAATGATTTTCCTGCTTTTTACTTTAATGTCTCCTATTCCTCCTTAATCCAATATTTATATTTATGACAAGCACCAGTTTTCAATCAAGAGAAAAGCTTC-----TGTGAAGTTGGGATTAGAGAATGTTTTATTCCACCCTCTATTGTC-----------------------TAAATAAACATGTTCAGAAATTGATCTCCTCCTTTTTATGGATCTGGGCTGTTTCAAACACCCCCAGAAAAGAAGAGGAGATCTCGCTTCTACTTCTGATCATTTGTTTTAAACTCTGTCTTTGAAATTAGCAAAATCCTACAGGGACTCAAA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21666896 701 + 198332218 TTTTACATTACAAAAT----AGA----GTAATTTTT------------AAAACGTATATATCAATAAATAGCAAGAAAGTAAAATTCAATATTAAATAAAGTTTTACAAAACATACTGTCATCCTG-------TAGTCCCTCTGCTATGAGA--ATCACAGAGAAGTGGGTCATTGTTTCAGAAAAGAATATGGCAATAAAAGTGAATTTAAATATTATGT-CAAAGAGGAAAAACACCTCTTTGTG-TTTTTA--------------------------------------------------------------------------------------------ATATGTCAATCATTGCTGCATTTTTTATTAGAAGACACATGTTTTCCTTTAATTTCCCTAATGTGTTATAGCTTTATTCCTAAACCACATGCTACCATGATTCCTTTGTGTAATTTTAAGTAATAAATCATAAATGAATCATAAA----CAAATTATAGAAGAATTATTCTGCTCCAGTGCTCACAATGATTTTCCTGCTTTTTACTTTAATGTCTCCTATTCCTCCTTAATCCAATATTTATATTTATGACAAGCACCAGTTTTCAATCAAGAGAAAGGCTTC-----TGTGAAGTTGGTATTAGAGAATGTTTTATTCCACCCTCTATTGTC-----------------------TAAATAAACATGTTCAGAAATTGATCTCCTCCTTTTTATGGATCTGGGCTGTTTCAAACACCCCCAGGCAAGAAGAGGAGATCCCGCTTCCACTTCTGATCATTAGTTTTAAACTCTGTCTTTGAAATTAGCAAAATCCTACAGGGACTCAAA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20279118 695 - 85365473 TTTTACATTACAATAT----AGA----GTAATTTTT------------AAAATGTAAATATCAATAACTCGTAAGAAAGTAAAATTCAATATTAAATAAAGTTTTACAAAACATACTGTCATCCTG-------TAGTCCCTCTGCTATGAGA--ATCACAGAGAAGTGGGTCATTGTTTCAGAAAAGAATATGGCAATAAAAGTGAATTTAAATATTATGT-CAAAGAGGAAAAACACCAACATGTGATCATTA--------------------------------------------------------------------------------------------ATATGTCAATCATTGCTGCATTTTTTATTAGAAGACAC--GTTTTCCTTTAATTTCCCAAATGTGTTATAGCTTTATTCCTAAACCACATGCTACCATGATTCCTTTGTGTAATTTtaagtaataaatcataaatgaatcat--------aaattatagaataatTATTCTGTTCCAGTGCTCACAATGATTTTCACGCTTTTTACTTTAATGTCTCCTATTCCTCCTTAATCCAATATTTATA-TTAGGACAAGCACCAGTTTTCAATCAAGAGAAAAGCTTC-----TGTGAAGTTGGGATTAGAGAATGTTTTACTCCACCCTCTACTGTC-----------------------TAAATAAACATGTTCAGAAATTGATCTCCTCCTTTTTATGGATCTGGGCTATTTCAAACACCCCCAGGCAAGAAGAGGAGATCCCGCTTCCACTTCTGATCATTTGTTTTAAACTCTGTCTTTGAAATTAGCAAAATCCTACAGGGACTCAAA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16745038 697 + 184069350 TTTTACATTATGaaa-------------taattttt------------aaaatgtaaatatcaataaatagtaagaaagtaaaattcaatattaaataaaCTTTTACAAAGCACACTGTCCTCCTG-------TAACCCCTCTGCTATGAGA--ATCACAGAGAAGTGGCTCATTGTTTCAGAAAAGAATATGGCAATAAAAATGAATTTAAACATTATGT-CAAAGAGGAAAAACACCAACATATGATTATAA--------------------------------------------------------------------------------------------ATATGTCAATCATTGCTGCATTTTTAATTAGAAGACACATGCTTTCCTTTAATTTCCCTAATGTGTTATAGCTTTATTTCTAAACCACATGCTACCATAATGCCTTTTGGTAATTTTAAGTAATAAATCATAAATGAGTCATAAA----CAAATTACAGAATAATTATTCTGCTCCAGTGCTCGCAATGATTTTCCTGCTTTTTACTTTAATGTTTCCCATTCCTCCTTAATCCAATATTTATATTTATGACAAGCACCAGTTTTCAATCAAGAGAAAAGCTTC-----TGTGAAGTTAGGATTAGGGAATGTTTTATTCCACCCTCTATTGTC-----------------------TAAATAAACATGTTCAGAAATTGATCTCCTCCTTTTTATGGATCTGGGCTGTTTCAAACACCCCCAGGCAAGAAGAGGAAATCTCGCTTTGACTTCTGATCATTTGTTTTAAACTCTGTCTTTGAAATTAGCAAAATCCTACAGGGACTCAAA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20794323 702 + 189454096 TTTTACATTATGAAAT----AGA----Gtaattttt------------aaaatgtaaatatcaataaatagtaagaaagtaaaattcaatattaaataAACTTTTACAAAGCACACTGTCCTCCTG-------TAACCCCTCTGCTATGAGA--ATCACAGAGAAGTGGCTCATTGTTTCAGAAAAGAATATGGCAATAAAAATGAATTTAAACATTATGT-CAAAGAGGAAAAACACCAACATATGATTATAA--------------------------------------------------------------------------------------------ATATGTCAATCATTGCTGCATTTTTAATTAGAAGACACATGCTTTCCTTTAATTTCCCTAATGTGTTATAGCTTTATTTCTAAACCACATGCTACCATAATGCCTTTTGGTAATTTTAAGTAATAAATCATAAATGAGTCATAAA----CAAATTACAGAATAATTATTCTGCTCCAGTGCTCGCAATGATTTTCCTGCTTTTTACTTTAATGTTTCCCATTCCTCCTTAATCCAATATTTATATTTATGACAAGCACCAGTTTTCAATCAAGAGAAAAGCTTC-----TGTGAAGTTAGGATTAGGGAATGTTTTATTCCACCCTCTATTGTC-----------------------TAAATAAACATGTTCAGAAATTGATCTCCTCCTTTTTATGGATCTGGGCTGTTTCAAACACTCCCAGGCAAGAAGAGGAAATCTCGCTTTGACTTCTGATCATTTGTTTTAAACTCTGTCTTTGAAATTAGCAAAATCCTACAGGGACTCAAA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16382368 702 + 178775436 TTTTACATTACAAaat----aga----gtaattttt------------aaaatgtaaatatcaataaatagtaagaaagtaaaattcaatattaaataaacttttaCAAAGCACACTGTCCTCCTG-------TAACCCCTCTGCTATGAGA--ATCACAGAGAAGTGGCTCATTGTTTCAGAAAAGAAtatggcaataaaaatgaatttaaacattATGT-CAAAGAGGAAAAACACAAACATGTGATTATAA--------------------------------------------------------------------------------------------ATATGTCAATCATTGCTGCATTTTTAATTAGAAGACACATGCTTTCCTTTAATTTCCCTAATGTGTTATAGCTTTATTTCTAAACCACATGCTACCATAATGCCTTTTGGTAATTTTAAGTAATAAATCATAAATGAGTCATAAA----CAAATTACAGAATAATTATTCTGCTCCAGTGCTCACAATGATTTTCCTGCTTTTTACTTTAATGTTTCCCATTCCTCCTTAAtccaatatttatatttatgacaAGCACCAGTTTTCAATCAAGAGAAAAGCTTC-----TGTGAAGTTAGGATTAGGGAATGTTTTATTCCACCCTCTATTGTC-----------------------TAAATAAACATGTTCAGAAATTGATCTCCTTCTTTTTATGGATCTGGGCTGTTTCAAACACCCCCAGGCAAGAAGAGGAAATCTCGCTTTGACTTCTGATCATTTGTtttaaactctgtctttgaaattAGCAAAATCCTACAGGGACTCAAA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19868833 702 - 48547382 TTTTACATTATAAAAC----AGA----GTAGTTTTT------------AAAATGTAAATATCAATAAGTAGTAAGAAAGTAAAATTCACTATTAAATAAAGTTTTACAAAGCACACTGTCCTCCTG-------TAGCCCCTCTGCTGTGAGA--ATCACAGAGAAGTGGGTCATTGTTTCAGAAAAGAATATGGCAATAAAAATGAATTTAAACATTATGT-CAAAGAGGAAAAACACGAACATATGATTATAA--------------------------------------------------------------------------------------------ATATGTCAATCATTGCTGCATTTTTAATTAGAAGACACATGCTTTCCTTTAATTTCCCTAATGTGTTATAGCTTTATTCCTAAACCACATGCTACCATAATGCCTTTTGGTAATTTTAAGTAATAAATCATAAATGAGTCATAAA----CAAATTACAGAATAATTATTCTGCTCCAGTGCTCACAATGATTTTCCTGCTTTTTGCTTTAATGTTTCCCATTCCTCCTTAATCCAATATTTATATTTATGACAAGCACCAGTTTTCAATCAAGAGAAAAGCTTC-----TGTGAAGTTAGGATTAGGGAATGTTTTATGCCACCCTCTATTGTC-----------------------TAAATAAACATGTTCAGAAATTGATCTCCTCCTTTTTATGGATCTGGGCTGTTCCAAACACCCCCAGGCAAGAAGAGGAAATCTCGCTTTGACTTCTGATCATTTGTTTTAAACTCTGTCTTTGAAATTAGCAAAATCCTGCAGGGACTCAAA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21225242 703 - 190850796 TTTTACATTACAAAATAGAAAGA----GTAACTTTT------------AAAATGTAAACATCAATAAATAATAAGAAAGTAAAATTCAATATTAAATAAAGTTTTACAGAACATACTGTTGTCCTG-------TAATCTTTCTGCTACAAGA--ATCACAGAGAAATGGGTCATTGTTTCAGAAAAGAATGTGGCAACAAAAGTGAATTTAAACATTATGT-CAAACACAAAAAGCACCAACATGTGATTATAA----------------------------------------------------------------------------------------------ATGTCAATCATTGCTAAATTTTTTATTAGAAGACATATGCTTTCCTTTAATTTCCCTAATGTGTTATAGCTTTACTCCTAAACCACAAAGTACCATAATTCCTTTTTGTAATTTTAAGTAATAAATCATAAATGAATCATAAA----CAAATTATAGAATAATTATTCTGCTCCAGTGCTCACAATGACGGTCATACTTTTCACTTTAATGTCTCCTATTCCTCCTTAATCCAATATTTATATTTATGACAAGCACTAGTTTTCAATCAAGAGAAAAGCTTC-----TGTGAAGTTAGGACTAGGGAATGTTTTCTTCCACCCTCTATTTTC-----------------------TAAACAAACATGTTCAGAAATTGAACTCCTCCTTTTTATGGATCT-AGCTGTTTCAAACTCCCCCAGGAAAGAAGAGGGGATCCCGCCTTGACTTCTTATCTTTTGTTTTAAACTCTCTCTTTGAAATTAGCACAATCCTACAGGAACTCAAA i calJac3.chr3 C 0 C 0 s mm10.chr5 49212584 625 + 151834684 TTTTATATTTAAAAAT-----------GTGATTCCTTAATATATAAGGAAAATGCATATATCAATAAATAATGATCATAGACAGTTTAATATTGAGTGTGGTTTTTCA---------GTCTTCCAGGCCACCTTATCCTTTCTGTTTTAAAGTCATCACAA------GGGTCACTGTCTCAGGGAATTAGATGGCATCAA---TGCACTTTAGCATTA-GT-----GAGAAAAAGAATCAACATGTCATCATAA--------------------------------------------------------------------------------------------ATGAGACAGTGACTGCTACATTTTT-ATTTGCAAGCATATGCTCTGCTTTAATTTCATTAATATG---CAGCCTTATTTCGAAATCCCATGATGTTCTAATCCttttt----atttttaataataaattataaGTACATGATAAATAAGCAAATTATGGGATAGTTATTCTGTTCCGGAACTCATCACAGTTTTCCAACTTCTTAT-----TGTTTAC--TTCCTTCAGAAGCAGATCT-----------GAAAGGACAGGACTGCAGT---GAGATGAACCCTCAGAATACACATTTGTGATCAGAAGCAACAATGTGCAATCATCTATAATCAGAGTCACCAATGACACACAATTTAAACAAATAAGTTTGCAAGTTA----------------GGATCAGGG----------------------------GGAAAC------------------------------ATTCTGTTTTCTAGGTAAACCAATTCCT-CACACACTTGAA i mm10.chr5 C 0 I 23 s canFam3.chr3 3804371 666 - 91889043 TTTTATATTACAAAAT----AGGAATCATGATTTTT------------AAAATGTAGAT-------------------------TTCAATACTGAATATGTTTTTACAAAACATATCACCACCCTG-------TATTCCTTCTGTTATGAAA--ATCACCATGAAATGGGCTTCAGTTTCAGAAAATAAGATGGAAACCACAATGATTTTAATCCTTAAGT-CAATGAGAGAAAACACCAACATGCATTTATGA--------------------------------------------------------------------------------------------------CAATTACTGCTGTCTTGTTCATTGGTAGAAATACAGTGTCTTTTAATTTCCCTAGCGGGCTATAGCTTTATTTGTAAATCACATGCCATCATAATTTCTTTTTGGAATTTTGAATAATCAATCATTATTGTCTCATAAA----TAAATTATAGAATAACTGTTCTTCTCCAAAGCCCATGATGATTTTCTTGCTTTTTAATTTAATGTCTCCTGTTCCTTCTCAATTCAGTATTTATATTTATGATAGGCACCAGTTTTTAGTGAAAAGAAAATCTCC-----TGTAAAGTTAGGGCTAGGGAATATCTTATTCTATACTTTACAGTC-----------------------TGAATAAAAATGTTCAGAAATTAGTTTCCTCCTCTTCCTAGACCCGGCCTATTCCAAATTCCTACAGGCAAGAAGAG---CTCCCACCTTGACTTCTGAATATTTGCATTAA------CTTTTGACATTAACAATGTTGTACAGGGAATCCAA i canFam3.chr3 I 655 C 0 a score=209645.000000 s hg38.chr4_KI270790v1_alt 103724 56 + 220246 AAGGTTACTTGTTCTTTCAGGCCTCTGTGAGTTTGAATTACCTGACAGGTATTGAG s panTro4.chr4 21490392 56 + 193495092 AAGGTTACTTGTTCTTTCAGGCCTCTGTGAGTTTGAATTACCTGACAGGTATTGAG i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21667597 56 + 198332218 AAGGTTACTTGTTCTTTCAGGCCTCTGTAAGTTTGAATTACCTGACAGGTACTGAG i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20279813 56 - 85365473 AAGGTTACTTGTTCTTTCAGGCCTCTGTGAGTTTGAATTACCTGACAGGTATTGAG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16745735 56 + 184069350 AAGGTCACTTGTTCTTTCAGGCCTTTGTGAGTTTGAATTACCTGACAGGTATTGAG i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20795025 56 + 189454096 AAGGTTACTTGTTTTTTCAGGCCTCCGTGAGTTTGAATTACCTGACAGGTATTGAG i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16383070 56 + 178775436 AAGGTTACTTGTTCTTTCAGGCCTCTGTGAGTTTGAATTACCTGACAGgtattgag i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19869535 56 - 48547382 AAGGTTACTTGTTCTTTCAGGCCTCTGTGAGTTTGAATTACCTGACAGGTATTGAG i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21225945 56 - 190850796 AAGGTTATTTGTTCATTCAAGCCTCTGTGAGTTTAAATTACCTGACAGGTACTGAG i calJac3.chr3 C 0 C 0 s canFam3.chr3 3805037 56 - 91889043 AAGGTTCTCTCTTCCTTCAGGCCTCTGTGAGGTTGAATTACCTGACAGCTAATAGA i canFam3.chr3 C 0 C 0 e mm10.chr5 49213209 23 + 151834684 I a score=1611768.000000 s hg38.chr4_KI270790v1_alt 103780 506 + 220246 --AAAATTATTTATAAAACAAAAACTTTTAC-AGAAGCTAAAATATAAGTGACAGAAAGGACTTTAGAAGGGACATGTTGTCCAGAATTATCTAAATTGTAATAGGTTGTATACCACTGATGGTACATATGATGC-TGAAGGTAGTA--ACATACTATTCAAAAAC-AGACTTTAATAGGAATATATTTGTTTTACATTGGCATCAGTTCAGTTTGCTGTGGTACTCTAAAT----ACTC--AGAGGTAATT--TTTGATGCTCCTAGTCTGGGTAGGTAATTTAATCAAATTCAG-TATAATGCTAGCaaaaagaaagaaacagctcttcaagcctgtgatttcatagatactactgtccggaacaatactccc--tttaaaaaataagtcaattgagttaaagcccatttaaataaatcaagta-tataaaattgataataaggtatgtc-aaaaaatatgaaggtggtagccaaaataatgaaaatttaggaaccattgATGTAGCAGATAAGCAAAATAGAC s panTro4.chr4 21490448 506 + 193495092 --AAAATTATTTATAAAACAAAAACTTTTAC-AGAAGCTAAAATATAAGTGACAGAAAGGACTTTAGAAGGGACATGTTGTCCAGAATTATCTAAATTGTAATAGGTTGTATACCACTGATGGTACATATGATGC-TGAAGGTAGTA--ACATACTATTCAAAAAC-AGATTTTAATAGGAATATATTTGTTTTACATTGGCATCAATTCAGTTTGCTGTGGTACTCTAAAT----ACTC--AGAGGTAATT--TTTGATGCTCCTAGTTTGGGTAGGTAATTTAACCAAATTCAG-TATAATGCTAGCaaaaagaaagaaacagctcttcaagcctgtgatttcatagatactactgtccgggacaatactccc--tttaaaaaataagtcaattgagttaaagcccatttaaataaatcaagta-tataaaattgataataaggtatgtc-aaaaaatatgaaggtggtagccaaaataatgaaaatttaggaaccattgATGTAGCAGATAAGCAAAATAGAC i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21667653 505 + 198332218 --AAAATTATTTATAAAACAAAAACTTTTAC-AGAAGCCAAAATATAAGTGACAGAAAGGACTTTAGAAGGGACATGTTGTCCAGAATTATCTAAATTGTAATAGGTTGTATACCACTGATGGTACATATGATGC-TGAAGGTAGTA--ACATACTATTCAAAAAC-AGACTTTAATAGGAATATATTTGTTTTACATTGGCATCAATTCAGTTTGCTGTGGTACTCTAAAT----ACTC--AGAGGTAATT--TTTGGTGCTCCTAGTTTGGGTAGTTAACTTAACCAAATTCAG-TATAATGCTAGCaaaaagaaagaaacagctcttcaagcctgtgatttcatagctactactgtctgggacaatactccc--tttaaaaaataagtcaattgatttaaagcccacttaaagaaatcaagta-tataaaattg-ttataaggtatgtc-aaaaaatatgaaggtggtagccaaaataatgaaaatttaggaaccattgATCTAGCAGATAAGCAAAATAGAG i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20279869 504 - 85365473 --AAAATTATTTAAAAAACAAAAACTTTTAC-AGAGGCTAAAATATAAGTGACAGAAAGGATTTTAGAAGGGACATGTTGCCCAGAATTATCCAAATCGTAATAGGTTGTATACCACTGATGGTACATATGATGC-TGAAGGTAGTA--ACATACTATTCAAAAAC-AGACTTTAATAGGAATATATGTGTTTTACATTGACATCAATTCAGTTTGCTGTGGTACTCTAAAT----ACTC--AGAGGTAATT--TTTGGTGCTCCTAGTTTGGGTAGATAATTTAACCAAATTCAG-TATAATGCTAGCaaaaagaaagaaacagctcttcaagcctgtgatttcacagacactactgtttgggacaatactgtc--tttaaaaaataagtcaattgatttaaagctcatttaaagaaatcaagta-ttt--aattggtaattaggtatgtc-aaaaaatatggagctggtacccaaaataatgaaaatttaggaaccattgATCTAGCAGCTAAGCAAAATAGAG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16745791 506 + 184069350 --AAAATTATTTAAAAAACAAAAACTTTTAC-AGAAGCTAAAATACAAGTGACAGAAAGGACTTTAGAAGCAAAATGTTTTCCAGAATTTTCCAAATTGTAATAGGTTGTACACTACTGATGGTACATATGATGC-TGAAGGTAGTA--ACATACTATTCAAAAAC-AGACTTTAATAGGAATACATTTGTTTTACATGGGCATCGATTCAGTTTGCTGTGGTACTCTAAAT----ACTC--AAAGGTAATT--TTTAATGCTCCTAGTTTGGGTAGATATTTTAACTAAattcag-tataatggtagcaaaaagaaagaaacagctcttcgagcctgtgatttcatagatactactgtttgggacaatactccc--tttaaaaaataagtcaattgatttaaagtccatttagagaaatcaagta-tacaaaattggtacttaggtatgtcaaaaaaatatgaaggtggtacctaaaataatgaaattttaggaaccattgATCTAGCAGGTAAACAAAAT-GAG i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20795081 506 + 189454096 --AAAATTATTTAAAAAACAAAAACTTTTAC-AGAAGCTAAAATACAAGTGACAGAAAGGACTTTAGAAGCAAAATGTTTTCCAGAATTTTCCAAATTGTAATAGGTTGTATACTACTGATGGTACATATGATGC-TGAAGGTAGTA--ACATACTATTCAAAAAC-AGACTTTAATAGGAATACATTTGTTTTACATGGGCATCGATTCAGTTTGCTGTGGTACTCTAAAT----ACTC--AAAGGTAATT--TTTAATGCTCCTAGTTTGGGTAGATATTTTAACTAAattcag-tataatggtagcaaaaagaaagaaacagctcttcgagcctgtgatttcatagatactactgtttgggacaatactccc--tttaaaaaataagtcaattgatttaaagtccatttagagaaatcaagta-tacaaaattggtacttaggtatgtcaaaaaaatatgaaggtggtacctaaaataatgaaattttaggaaccattgATCTAGCAGGTAAACAAAAT-GAG i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16383126 506 + 178775436 --aaaattatttaaaaaacaaaaacttttac-agAAGCTAAAATACAAGTGACAGAAAGGACTTTAGAAGCAAAATGTTTTCCAGAATTTTCCAAATTGTAATAGGTTGTATACTACTGATGGTACATATGATGC-TGAAGGTAGTA--ACATACTATTCAAAAAC-AGACTTTAATAGGAATACATTTGTTTTACATGGGCATCGATTCAGTTTGCTGTGGTACTCTAAAT----ACTC--AAAGGTAATT--TTTAATGCTCCTAGTTTGGGTAGATATTTTAACTAAATTCAG-TATAATGgtagcaaaaagaaagaaacagctctTCGAGCCTGTGATTTCATAGATACTACTGTTTGGGACAATactccc--tttaaaaaataagtcaattGATTTAAAGTCCATTTAGAGAAATCAAGTA-TACAAAATTGGTACGAAGGTATGTCaaaaaaaTATGAAGGTGGTacccaaaataatgaaattttaggAACCATTGATCTAGCAGGTAAACAAAAT-GAG i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19869591 486 - 48547382 --AAAATTATTTAAAAAACAAAAACTTTTAC-AGAAGCTAAAATACAAGTGACAGAAAGGACTTTAGAAGCAAAATGTTTTCCAGAATTTTCCAAATTGTAATAGGTTGTATACTACTGATGGTACATATGATGC-TGAAGGTAGTA--ACATACTATTCAAAAAC-AGACTTTAATAGGAATACATTTGTTTTACATGGACATCGATTCAGTTTGCTGTGGTACTCTAAAT----ACTC--AAAGGTAATT--TTTAAATCTCCTAGTTTGGGTAGATATTTTAACTAAATTCAG-TATAATGGTAGCAAAAAGAAAGAAACAGCTCTTCGAGC--------------------CTGTTTGGGACAATACTCCC--TTTAAAAAATAAGTCAACTGATTTAAAGTCCATTTAGAGAAATCAAGTA-TACAAAATTGGTACTTAGGTATGTCAAAAAAAGATGAAGGTGGTACCCAAAATAATGAAATTTTAGGAACCATTGATCCAGCAGGTAAACAAAAT-GAG i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21226001 487 - 190850796 --AAAATTATTTTAAAAATGAAAACTTCTAC-AGAGGCGAAAATATAAGTGACAGAAAGGACTTTAGAAGGGAAACATAGTCcagaattttccaaactgtgataggttgtataccactgatggtacatatgatgC-TGAAGGTAA--------------CAAAAAC-AGAC-TTAATAGGAATATATTTGTCTTACATGTGCATCAATTTAGTTTGCTGTGGTACTTTAAATAAACACTC--AGCAGCAATT--TTTATTGCTTATAGTTTGGGTAGATAACTTAACCAAATTTAG-TATAATGGTAGCAAAAAGAAAGAAa----------agcgtgtaatttcacagatactactgtttgggacaatactgtc--tttaaaaaagaaatcaattgatttaaagcctatttaaagaaatcaagta-tataaaattggtacttaggtaggtc-aaaaaatatgaaggtggtacccaaaataatgaaactttagaaacCATTGATCTAGCAGGTAAGCAAAACTGAG i calJac3.chr3 C 0 C 0 s mm10.chr5 49213232 418 + 151834684 --ACATTTAATTACAGACCAAAAAAAATTACAAAAAACTAAAGTGTTAATG--------------AAGAGGAATGCCTTATCCATA--CATTCCAGTACTAATAAGTTGTGTACAACTGATGGTCCTTTGGATGG-TTTAAGTAGCAATACATAATTTTTAGTGGCTCTGCTGtaatctga----atttgtttaccatggtcatcaattcTCTTCACTATAA-----TAAAT---------------------------TATTCCTAGT----AGAGATAATTTCTCAAAATCC----ATCAGAGATGCATGAGGAAAAAAA--------------------------------------------AGTACTTGCATTTTAAATAATAAGTCAGCTGACTCAAAGCTCATTTAAGTGATGCAAGGA-TATTAAATTGGTACTTGAGTCTTATAAAATTACATGAAAGTGACAACAAAAATTGCAAAAACTTAAGACATATTTATCTAGAAGGTAAGAAAACTAGGA i mm10.chr5 I 23 C 0 s canFam3.chr3 3805093 504 - 91889043 AAGATATCATTTTTTTAAACAAAACTTTTAT-AGAGTTTAAAATACTAATGACAGATGAAACTTCAGAAGAGACAATTTGTCCAGAATTTTCCACATTGTGATGGGTTGGATGCCACTGGTGGCATGTAGGAGGCTTTTAGGTAGTA--ACACCCTATTTAAAGAT-TGATTTTCATAAGAACGCATTTATTTTCCATGGATTTGAATTCATTTT-CTGACATA-GCCAAAT----ACTCAAAAAGGTAGTCGATATAGAGTTCCTAGTTTAGGCAGAGTGCTTTACCAAATTCAATTACAAGTGTATTA----GAAGGAATTGTTTCTTCCAGCCTGTGATTTCACAGATGCTATTGTTTAAGAGAATAC--CA--TTTAAAAA--AGGTTAATTGATTTAGTGTTCATGGAAAATAAACAAATAGTATAAAAGCAACACTTAGATCTATC--ACTTATATGAAAACAGTACCAAAAATTGCTAAAGTTTAGTAAACATTTATCTAGCAGATAAGCAGGCTATAG i canFam3.chr3 C 0 C 0 a score=132335.000000 s hg38.chr4_KI270790v1_alt 104286 43 + 220246 AAAGTAATCAAGTG--ACTTTTCAGATTGAGAGCTACCTTTCTAG s panTro4.chr4 21490954 43 + 193495092 AAAGTAATCAAGTG--ACTTTTCAGATTGAGAGCTACCTTTCTAG i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21668158 43 + 198332218 AAAGTAATCAAGTG--ACTTTTCAGATCGAGAGCTACCTTTCTAG i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20280373 43 - 85365473 AAAGTAATCAAGTG--ACTTTTCAGATTGGGAGCTACCTTTCTAG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16746297 43 + 184069350 GAAGTAATCAAGTG--ACTCTGCAGATCAAGAGCTGCCTCTCTAG i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20795587 43 + 189454096 GAAGTAATCAAGTG--ACTTTGCAGATCAAGAGCTGCCTCTCTAG i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16383632 43 + 178775436 GAAGTAATCAAGTG--ACTTTGCAGATCAAGAGCTACCTCTCTAG i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19870077 43 - 48547382 AAAGTAATCAAGTG--ACTTTGCAGATCAAGAGCTACCTCTCTAG i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21226488 43 - 190850796 AAAGTAATCGAGTG--ACTTTGCAGATCAAAAGCTACCTCCCTAG i calJac3.chr3 C 0 C 0 s mm10.chr5 49213650 45 + 151834684 AAAATGAGGAAGAGCTGCTATCATGCTCAAGAGCTAACTCTTGAG i mm10.chr5 C 0 I 49 e canFam3.chr3 3805597 0 - 91889043 C a score=27720.000000 s hg38.chr4_KI270790v1_alt 104329 10 + 220246 TTGGAGAGTG s panTro4.chr4 21490997 10 + 193495092 TTGGAGAGTG i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21668201 10 + 198332218 TTGGAGAGTC i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20280416 10 - 85365473 TTGGAGAGTC i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16746340 10 + 184069350 TTGGAGAGTA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20795630 10 + 189454096 TTGGAGAGTA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16383675 10 + 178775436 TTGGAGAGTA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19870120 10 - 48547382 TTGGAGAGGA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21226531 10 - 190850796 TTGGAGAGTC i calJac3.chr3 C 0 C 0 e mm10.chr5 49213695 49 + 151834684 I e canFam3.chr3 3805597 0 - 91889043 C a score=135843.000000 s hg38.chr4_KI270790v1_alt 104339 45 + 220246 GATCATTCTTTCCTCTTGGTTTTTGCATtctctctttctccttct s panTro4.chr4 21491007 45 + 193495092 GATCATTCTTTCCTCTTGGTTTTTGCATtctctctttctccttct i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21668211 45 + 198332218 GATCATTCTTTCCTCTTGGTTTTTGCATtctctctttctccttct i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20280426 45 - 85365473 GAtcattctttcctcttggtttttgcattctctctttctccttct i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16746350 42 + 184069350 GATTATTCTTTGCTCTTGGTTTTTGCATTCTCTTTTTCTCCT--- i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20795640 42 + 189454096 GATTATTCTTTGCTCTTGGTTTTTGCATTCTCTTTTTCTCCT--- i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16383685 42 + 178775436 GATTAttctttgctcttggtttttgcattctctctttctcct--- i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19870130 42 - 48547382 GATTAttctttgctcttggtttttgcattctctctctctcct--- i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21226541 45 - 190850796 AATCATTCGTTCCTCTTGGTTTCTGCATtctctctttctccttct i calJac3.chr3 C 0 C 0 s mm10.chr5 49213744 45 + 151834684 AATCATTCTTTTCTCATGGTTTTGCAGTCTTCTATTTTTACCTTT i mm10.chr5 I 49 I 3 e canFam3.chr3 3805597 0 - 91889043 C a score=57758.000000 s hg38.chr4_KI270790v1_alt 104384 21 + 220246 ctctttttctggtctctctct s panTro4.chr4 21491052 21 + 193495092 ctctttttctggtctctctct i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21668256 21 + 198332218 ctctttttctggtctctctca i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20280471 21 - 85365473 ctctttttctagtctctctct i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16746392 20 + 184069350 -TCTTTTTCTGGTCTCTCTCT i rheMac3.chr5 C 0 I 126 s macFas5.chr5 20795682 18 + 189454096 -TCTTTTTCTGGTCTCTCT-- i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16383727 20 + 178775436 -tctttttctggtctctccct i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19870172 20 - 48547382 -tctttttctggtctctctct i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21226586 21 - 190850796 ctctctttctggtctctttct i calJac3.chr3 C 0 C 0 e mm10.chr5 49213789 3 + 151834684 I e canFam3.chr3 3805597 0 - 91889043 C a score=2865.000000 s hg38.chr4_KI270790v1_alt 104405 2 + 220246 ct s panTro4.chr4 21491073 2 + 193495092 ct i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21668277 2 + 198332218 ct i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20280492 2 - 85365473 ct i nomLeu3.chr20 C 0 C 0 s chlSab2.chr27 19870192 2 - 48547382 ct i chlSab2.chr27 C 0 I 187 s calJac3.chr3 21226607 2 - 190850796 ct i calJac3.chr3 C 0 C 0 e mm10.chr5 49213789 3 + 151834684 I e macFas5.chr5 20795700 0 + 189454096 C e rheMac3.chr5 16746412 126 + 184069350 I e canFam3.chr3 3805597 0 - 91889043 C e papAnu2.chr5 16383747 0 + 178775436 C a score=24411.000000 s hg38.chr4_KI270790v1_alt 104407 40 + 220246 ctctctctcactctctGtttgtatttatatattttct------------------------------ttt s panTro4.chr4 21491075 36 + 193495092 ctctct----ctctctGTTTGTATTTATATAttttct------------------------------ttt i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21668279 37 + 198332218 ctctctct--ctttctGTTTGTATTTATATATTTTC-------------------------------TTT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20280494 33 - 85365473 ctct------ctctctatttatatttacatattttc-------------------------------ttt i nomLeu3.chr20 C 0 C 0 s macFas5.chr5 20795700 53 + 189454096 ----------CTTTATATTTGTATTTATATATttccttc-------cttccttccctccctccctccttc i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16383747 62 + 178775436 ------ct--ttttatatttgtatttatatatttccttccttccttcttccttccttccttccctccctc i papAnu2.chr5 C 0 C 0 s calJac3.chr3 21226609 38 - 190850796 ctctctct--ctTTATATATGTATTGATGTATTTTCT------------------------------GTT i calJac3.chr3 C 0 C 0 e mm10.chr5 49213789 3 + 151834684 I e chlSab2.chr27 19870194 187 - 48547382 I e rheMac3.chr5 16746412 126 + 184069350 I e canFam3.chr3 3805597 0 - 91889043 C a score=33204.000000 s hg38.chr4_KI270790v1_alt 104447 41 + 220246 ctttttctttttctttttcttttttttttttttttttttga s panTro4.chr4 21491111 34 + 193495092 ctttttctttttc-------tttttttttttttttttttga i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21668316 39 + 198332218 CTTTTCCttttttttttt--tttttttttttttttttttga i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20280527 37 - 85365473 ctttcttttttttctttt--ttttttttttttttttttt-- i nomLeu3.chr20 C 0 C 0 s macFas5.chr5 20795753 39 + 189454096 cttccttTCttttttctt--tttttttttttttttttttga i macFas5.chr5 C 0 I 49 s papAnu2.chr5 16383809 39 + 178775436 cctccttccttcctttct--ttttttttttttttttttaga i papAnu2.chr5 C 0 I 49 e mm10.chr5 49213789 3 + 151834684 I e chlSab2.chr27 19870194 187 - 48547382 I e rheMac3.chr5 16746412 126 + 184069350 I e calJac3.chr3 21226647 0 - 190850796 C e canFam3.chr3 3805597 0 - 91889043 C a score=2370.000000 s hg38.chr4_KI270790v1_alt 104488 4 + 220246 gaga s panTro4.chr4 21491145 4 + 193495092 gaga i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21668355 4 + 198332218 gaca i ponAbe2.chr4 C 0 C 0 s rheMac3.chr5 16746538 4 + 184069350 gatg i rheMac3.chr5 I 126 C 0 s macFas5.chr5 20795841 4 + 189454096 gatg i macFas5.chr5 I 49 C 0 s papAnu2.chr5 16383897 4 + 178775436 gacg i papAnu2.chr5 I 49 C 0 e mm10.chr5 49213789 3 + 151834684 I e chlSab2.chr27 19870194 187 - 48547382 I e calJac3.chr3 21226647 0 - 190850796 C e canFam3.chr3 3805597 0 - 91889043 C e nomLeu3.chr20 20280564 0 - 85365473 C a score=572890.000000 s hg38.chr4_KI270790v1_alt 104492 275 + 220246 gagtctcgctcagtcgcccgggctggagtgcagtggcgtgatcttggctcactgcaagctccgcctcccgggtgcacgccattctcctgcctcagcctccctagtagcttggactacaggtgcccgccaccacgccctgctaa----tttttttgtatttttagtagagacgggatttcaccctcttagccaggatggtctcgatcacctgacctcgtgatccgcccaccacagcctcccaaagttctgggataagagacatgagccaccgtgcccggc s panTro4.chr4 21491149 275 + 193495092 gagtctcgctcagtcgcccgggctagagtgcagtggcgtgatcttggctcactgcaagctccgcctcccgggttcacgccattctcctgcctcagcctccctagtagcttggactacaggtgcccgccaccacgccctgctaa----tttttttgtatttttagtagagacgggatttcaccctcttagccaggatggtcttgatcacctgacctcgtggtccgcccaccacagcctcccaaagttttgggataagagacatgagccaccgtgcccggc i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21668359 274 + 198332218 gagtctcgctcagtcgcccgggttggagggcagcggcatgatctctgctcactgcaagctctgcctcccaggttcacgccattctcctgcctcagcctccggagtagctgggactacaggcacctgccaccacgcctggctaa----tttttttgtgtttttagtagagacatg-tttcaccgtcttagccaggatgatctcgatcacctgacctcgtgattcgcctgccacagcctcccaaagtgctaggataacagacgtgagccaccgtgcccggc i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20280564 268 - 85365473 gagtcttgctctgtcgcccaggctggagtgcagtggcgcgatctccactcactgcaagctccgcctcccgggttcacgccattctcctgcctcagcctcccgagtatctgggactacaggcacccaccaccacgctcggctaa----tttttttgtatttttagtagagacagggtttcaccgtgttagccaggatggtcttgatcacctgacctcatgatcttcccgccacagcctcccaaagtgctgggattacaggcatgagccacc-------ac i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16746542 279 + 184069350 gagtctcactctgtcgcccaggcttgagtgtaatggcatgatttctgctcactgcaggctccgcctcctaggttcacgccattctcctgcctcatcccctatagtagctgggactacaggcgcctgctaccacacccagatactttttttttctgtatttttagtaaagacggggtttcaccatgttagccaggatggtctcgatctcctgatctcatgatccgcctacctcagcctcccaaagtgctgggattacaggcatgagccactgcaccaggc i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20795845 279 + 189454096 gagtctcactctgtcgcccaggcttgagtgtgatggcatgatttctgctcactgcaggctccgcctcctaggttcacgccattctcctgcctcatcccctatagtagctgggactacaggcgcctgctaccacacccagatactttttttttctgtatttttagtaaagacggggtttcaccatgttagccaggatggtctcgatctcctgatctcatgatccgcccacctcagcctcccaaagtgctgggattacaggcatgagccactgcaccaggc i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16383901 279 + 178775436 gagtctcactctgtcgcccaggcttgagtgtaatggcatgatttctgctcactgcaggctccgcttcctaggttcacgccattctcctgcctcaccccctatagtagctgggactacaggcgcctgccaccacacccagatactttttttttctgtatttttagtaaagacggggtttcaccatgttagccaggatggtctcgatctcctgatctcatgatccgcccgcctcagcctcccaaagtgctgggattacaggcatgagccactgcaccaggc i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19870381 278 - 48547382 gagtctcactctgttgcccaggcttgagtgtagtggcatgatttctgctcactgcaggctccgcctcctaggttcatgccattctcctgcctcaccccctgtagtagctggcactacaggcacctgccaccacacccagatac-ttttttttctgtatttttagtaaagacggggtttcaccgtgttagccaggttggtctcgatctcctgatctcgtgatccacccgcctcggcctcccaaagtgctgtgattacaggcatgagccactgcaccaggc i chlSab2.chr27 I 187 C 0 e mm10.chr5 49213789 3 + 151834684 I e calJac3.chr3 21226647 0 - 190850796 C e canFam3.chr3 3805597 0 - 91889043 C a score=55244.000000 s hg38.chr4_KI270790v1_alt 104767 21 + 220246 catatttatatattttctata s panTro4.chr4 21491424 21 + 193495092 cATATTTATGTATTTTCTATA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21668633 21 + 198332218 cATATTTATATATTTtctgta i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20280832 21 - 85365473 catatttatatactttctata i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16746821 21 + 184069350 cATATTTATATATTTTCTATA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20796124 21 + 189454096 cATATTTATATATTTTCTATA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16384180 21 + 178775436 catatttatatattttctata i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19870659 21 - 48547382 cATATTTATATATTTTCTATA i chlSab2.chr27 C 0 C 0 s mm10.chr5 49213792 21 + 151834684 CATGTGTTTATAATTCTTGGG i mm10.chr5 I 3 C 0 e calJac3.chr3 21226647 0 - 190850796 C e canFam3.chr3 3805597 0 - 91889043 C a score=2230845.000000 s hg38.chr4_KI270790v1_alt 104788 734 + 220246 ttATCTCATAtgttcacttgtttgtttcgtctaccaaatagtgagttacttgatgatcccaggacctcatttcatttatctatgtgtaaataccaacaataccaactatacactgctcacccgataagtgagactcaatac-atgtttgtggagtgattggatAATTAACAGCAAAGATAGAAGTTAGTCCATTGGCCTCCGACTTCCCTCCTTAAGTCCTCGTTCAGAACTATTTTCACTGTACCATGCGTTCAACATTTAATGCTTAGATATTCATTTCCAAAGTCACAAATTAAAATAGAAAACTAATGCGCTCCACATTTTAAAAATCTTGAGAAATTGCTAATGATTAT-CAACTGAAATATTTGAATGTAGAAATAGCTTTT------TAAAAAATTAGTGCTTGATTAAGCAAATATTAAACATGGTGGTACCACTGAGTTAAAGCAAGAGTAAGAAA-----GATGAATATTTATTATTTACATAAGTTTTGATCATAT-CCTTGTTGTTAGCTGTACTGCATACTTTAGAAGACATGCAATCAGACAGTCCAAATTCTAATTGCAGCTTTGCTCATTATTTCTGTCTGGATTTGTTCAAATCCTTAGAACCTTTGGAGACTGGAGGA---AAAGTAACAACCCCAGGTAACCTGTTCCTGAAATAAGCCAAATAAGGCATAGATCCCAAGGTGAGGCTCCCTTTGTTGATTGTATTCACCAAATATATAAATTTACTAATAA s panTro4.chr4 21491445 734 + 193495092 TTATCTCATAtgttcacttgtttgtttcgtctaccaaatagtgagttacttgatgatcccaggacctcatttcatttatctatgtgtaaataccaacaataccaactatacactgctcacccgataagtgagactcaatac-atgtttgtggagtgattggatAATTAACAGCAAAGATAGAAGTTAGTCCATTGGCCTCCGACTTCCCTCCTTAAGTCCTCGTTCAGAACTATTTTCACTGTACCATGCGTCCAACATTTAATGCTTAGATATTCATTTCCAAAGTCATAAATTAAAATAGAAAACTAATGCGCTCCACATTTTAAAAATCTTGAGAAATTGCTAATGATTAT-CAACTGAAATATTTGAATGTAGAAATAGCTTTT------TAAAAAATTAGTGCTTGATTAAGCAAATATTAAACATGGTGGTACCACTGAGTTAAAGCAAGAGTAAGAAA-----GATGAGTATTTATTATTTACATAAGTTTTGATCATAT-CCTTGTTGTTAGCTGTACTGCATACTTTAGAAGACATGCAATCAGACAGTCCAAATTCTAATTGCAGCTTTGCTCATTATTTCTGTCTGGATTTGTTCAAATCCTTAGAACCTTTGGAGACTGGAAGA---AAAGTAACAACCCCAGGTAACCTGTTCCTGAAACAAGCCAAATAAGGCATAGATCCCAAGGTGAGGCTCCCTTTGTTGATTGTATTCACCAAATATATAAATTTACTAATAa i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21668654 734 + 198332218 ttatctcatatgttcacttgtttgtttcctctaccaaatagtgagttacttgatgatcccaggcccgcatttcatttatctatgtgtaaacaccaacaataccaactatacactgctcacccgataagtgagactcaatac-gtgtttgtgcagtgattggatAATTAACAGCAAAGATAGAAGTTAGTCTATTGG-CTCCGACTTCCCTCCTTAAGTTCTCGTTCAGAACTATTTTCACTGTACCATGTGTCCAACATTTAATGCTTAGATATTCATTTCCAAAGTCAGAAATTAAAATAGAAAACTAATGCGCTCCACATTTTAAAAATCTTGAGAAATTGCTAATGATTAT-CAACTGAGATATTTGAATGTAGAAATAGCTTTT------TAAAAAATTAGTGCTTGATTAAGCAAATATTCAACATGGTGGTACCACCGAGTTAAAGCAAGACTAAGAAA-----GATGAGTATTTATTATTTACATAAGTTTTGATCATATCCCTTGTTGTTAGCTGTATTGCATACTTTAGAAGACATGCAATCAGACAGTCCAAATTCTAATTGCAGATTTGCTCATTATTTCTGTCTGGATTTGTTCAAATCCTTAGAACCTTTGGAGACTGGAAGA---AAAGTAACAATCCCAGGTAACCTGTTCCTGAAATAAGACAAATAAGGCATAGATCCCAAGGTGAGGCTCCCTTTGTTGATTGTATTCACCAAATACATAAATTTACTAATAA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20280853 679 - 85365473 ttatctCATAtgttcacttgtttgtttcctctaccaaatagtgagttact---tgatcccaggacctcatttcgtttatctatgtgtaaacaccaacaataccaactatacactgctcaccccataagtgagactcaatac-atgtttgtggagtgattgaatAATTAACAGCAAAGATAGAAGTCAGTCCATAGGCCTCTGACTTCCCTCGTTAAGTCCTCGTTCAGCACTATTTTCACTGTACTGTGTGTCCAACATTTAATGCTTAGATATTCATTTCCAAAGTCAGAAATTAAAATAGAAAACTAATGTGCTCCACATTTTAAAA--TTTGAGAAATTGC---------------------------------------------------------TTAGTGCTTGATTAAGCAAATATGAAAAATGGTGGTACCACCGAGTCAAAGCAAGAGTAAGAAA-----GATGAGTATTTATTATTCACCTAAGTTTGGATCATAT-CCTTGTTGTTATCTGTATTGCACACTTTAGAAGACATGCAATCAGACAGTGCAAATTCTAATCGCAGCTTTGCTCATTACTTCCGTCTGGATTTGTTCAAATCATTAGAACCTTTGGAGACTGGAAGA---AAAGTAACAACCCCAGGTAACCTGTTCCTGAAATAAGTCAAATAAGGCATAGATCCCAAGGTGAGGCTCCCTTTGTTGATTGTATTCATCAAATATATAAATTTACTCATAA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16746842 729 + 184069350 TTATCTCTTAtgttcacttgtttgtttcctctaccaaatagtgagttatttgatgataccaggacctcatttcatttatctatgtgtaaacaccaactataccaactacacactgctcatcccataaatgagaatcaatacaatgtttgtggagtgattggatAATTAAGAGAAAAGATAGTAGTCAGTCCATAGGCCTCTGACTTCCCTTCTTAAGT-CTCGTTCAAAACTATTTTCAC-ATGCTGTGTGTCCAACATTTAATGCT----TATTCATTTTCAAAGTCATAAATTAAAATAGAAAACTAATGCGCTCCACATTTTAAAAATCTTGAGAAATTGCTAACGATTGT-CAACTAAAATATTTGAGTGTAGAAATAGCTTTTA-----AAAAAAATTAGTGCTTGATTAAGCAAATATTAAACATGGTGGTACCACTGAGTTAAAGCAAGAGTAAGAAA-----GATGACTATTTATTATTTACATAAGCTTTGATCATAT-CTTCGTTGTAATCTGTA-TGCATACTTCAGAAGACATGCAATCAGACAGTCCAAATTCTAATTGCAGCTTTGCTCATTATTTCTGTCTGGATTTGTTCAAATCATTAGCACCTTTGGAGACTGGAAGA---AAAGTAACAACCCCAGGTAACCTGCTCCTGAAATAAGCCAAATAAGGCATAGATCCCAAGGTGAGGCTCCCTTTATTGATTGTATTCACCAAATCCATAAATTTACTAATAA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20796145 729 + 189454096 TTATCTCTTATGTTCACTTGTTTGTTTCCTCTACCAAATAGTGAGTTATTTGATGATACCAGGACCTCATTTCATTTATCTATGTGTAAACACCAACTATACCAACTACACACTGCTCATCCCATAAATGAGAATCAATACAATGTTTGTGGAGTGATTGGATAATTAAGAGAAAAGATAGTAGTCAGTCCATAGGCCTCTGACTTCCCTTCTTAAGT-CTCGTTCAAAACTATTTTCAC-ATGCTGTGTGTCCAACATTTAATGCT----TATTCATTTTCAAAGTCATAAATTAAAATAGAAAACTAATGCGCTCCACATTTTAAAAATCTTGAGAAATTGCTAACGATTGT-CAACTAAAATATTTGAGTGTAGAAATAGCTTTTA-----AAAAAAATTAGTGCTTGATTAAGCAAATATTAAACATGGTGGTACCACTGAGTTAAAGCAAGAGTAAGAAA-----GATGACTATTTATTATTTACATAAGCTTTGATCATAT-CTTCGTTGTAATCTGTA-TGCATACTTCAGAAGACATGCAATCAGACAGTCCAAATTCTAATTGCAGCTTTGCTCATTATTTCTGTCTGGATTTGTTCAAATCATTAGCACCTTTGGAGACTGGAAGA---AAAGTAACAACCCCAGGTAACCTGCTCCTGAAATAAGCCAAATAAGGCATAGATCCCAAGGTGAGGCTCCCTTTATTGATTGTATTCACCAAATCCATAAATTTACTAATAA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16384201 729 + 178775436 ttatctCTTATGTTCACTTGTTTGTTTCCTCTACCAAATAGTGAGTTATTTGATGACACCAGGACCTCATTTCATTTATCTATGTGTAAACACCAACTATACCAACTACACACTGCTCATCCCATAAATGAGACTCAATACAATGTTTGTGGAGTGATTGGATAATTAAGAGAAAAGATAGAAGTCAGTTCATAGGCCTCTGACTTCCCTTCTTAAGT-CTCGTTCAAAACTATTTTCAC-ATGCTGTGTGTCCAACATTTAATGCT----TATTCATTTTCAAAgtcataaattaaaatagaaaactaatgcgctccacattttaaaaaccttaagAAATTGCTAACGATTGT-CAACTAAAATATTTGAGTGtagaaatagctttta-----aaaaaaattagtgcttGATTAAGCAAATATTAAACATGGTGGTACCACTGAGTTAAAGCAAGAGTAAGAAA-----GATGactatttattatttacataagCTTTGATCATAT-CTTCATTGTTATCTGTA-TGCATACTTCAGAAGACATGCAATCAGACAGTCCAAATTCTAATTGCAGCTTTGCTCATTATTTCTGTCTGGATTTGTTCAAATCATTAGCACCTTTGGAGACTGGAAGA---AAAGTAACAACCCCAGGTAACCTGTTCCTGAAATAAGCCAAATAAGGCATAGATCCCAAGGTGAGGCTCCCTTTATTGATTGTATTCACCAAATCCATAAATTTACTAATAA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19870680 728 - 48547382 TTATCTCTTATGTTCACTTGTTTGTTTCCTCTACCAAATAGTGAGTTACTTGATGATCCCAGGACCTCATTTCATTTATCTATGTGTAAACACCAACTATACCAACTACACACTGCTCACCCCATAAATGAGACTCAATAC-ATGTTTGTGGAGTGATTGGATAATTAAGAGAAAAGATAGTAGTCGGTCCATAGGCCTCTGACTTCCCTTCTTAAGTCCTCATTCAGAACTATTTTCAC-ATGCTGTGTGTCCAACATTTAATGCT----TATTCACTTCCAAAGTCAGAAATTAAAATAGAAAACTAATGCGCTCCACATTTTAAAAATCCTGAGAAATTGCTAATGATTGT-CAACTAAAATATTTGAGTGTAGAAATAGCTTTT------AAAAAAATTAGTGCTTGATTAAGCAAATATTAAACATGGTGGTATCACTGAGTTAAAGCAAGAGTAAGAAA-----GATGACTATTTATTATTTACATAAGCTTTGATCATAT-CTTCGTTGTTATCTGTA-TGCATACTTCAGAAGACATGCAATCAGACAGTCCAAATTCTAATTGCAGCTTTGCTCATTATTTCTGTCTGGATTTGTTCAAATCATTAGCACCTTTGGAGACTGGAAGA---AAAGTAACAACCCCAGGTAACCTGTTCCTGAAATAAGCCAAATAAGGCATAGATCCCAAGGTAAGCCTTCCTTTATTGATTGTATTCACCAAATCCATAAATTTACTAATAA i chlSab2.chr27 C 0 I 12 s calJac3.chr3 21226647 729 - 190850796 TTATCCCATAtgttcacttgtttgtttcctctaccaaatagtgagttaactgatgatcct-ggacctcatttcagttatctttgtgtaaacactaactataccaactatctactgctcatcccgtaagtgagactcaatcc-atgtttgtggagtgattaaatAATTAACAGCAAAGATAGAAGTCAGTCCATAGGCCTCTCACTTCCCTCGTTAAGTCCGCGCTCAGAACTATTTTCACTGTATTGTGTGTCTCACATTTAATGCT----TAATCATTTCCAAAGTCAGAAATTAAAATAGAAAACTAATGCACTCCACATTTTAAAAATCTTGAGAAATTGCTAACGATTAT-CAACTAAAACATGTGAATGTAGAAATAGCTTTT------TAAAAAATCAGTGCCTGATTAAGCAAATATTCAACATGGTGGTACCACCGAGTTAAAGCAAGAGTAAGAAA-----CATGAGTATGTACTGTTTACACAAGCTTTGAGCATAT-CCTTGTTGCTAGCTGTATTGTATACTTTAGAAGGCATGCAATCAGACAGTCCAAATTCTAATTGCAGCTTTGCTCATTATTTTTGTCTTGATTTGTTCATATCATTAGCCCCTTTGGAGACTGAAAGA---AAAGTAACAACCCCAGGTTACCTGTTCCTGAAATAAGCCAAATAAGGTTTAGATCCCAACATGAGGCTCCCTGTGTTGATTGTATTCACCGAATATATAAAAGTACTAATAC i calJac3.chr3 C 0 C 0 s mm10.chr5 49213813 702 + 151834684 TTGTC-ATTGTATTCAGCTGTTTGCTTCTTCTATCACTCACTGACTTCCTTAATGGTCCTAGGATCT-ATTTTAATTATTTAGGTTTATCTACCAG------TAACTATAAA--GCCCAGCTTAGAGCTTGGGCTCTGTGC-TTGCATTTGCAATAACTTTTTAACTAACCTTCAACATGTATCTTAACTCCTACACCTCGGAC-ACCCTTGTTAAA--CTCTGCTATGTTTGTCTCCATCATACCAATGCACCAACACTAAATGCT--------CATTCCCCAAATCACAAATTA----AGAATGATAACACATTCTAAGTTATAAAATATATGTGACAT---AAATCATTATCCAAGTGGCATAGTTTAATGTATAAAGAGAATTTATTGCTTGCAATATTATTGCTTGATTTCGGAAGTATTAAACAGTGTGGTACTACTGATGTCAAGC--GTGTAGGAAATTGGTAATGAGTATTCATTATTTACCTGTGCTTTGA--ACAT-TCTAGTTGTTGCCTCTATCACATTTTGCACAGGATATGTAATCAGACAGTCCAAATTCTAATTGCTGCTTTGCTTATTAATTCTGTCTGGATTTAATGAAATCATTAACACCTTTTGATCACAGGAGAATGAAAGTTACAACCTGAAATAACCTCATCCGGAATTA------------TACAGATGCAAAG--AAGACTTGCTTTGTTGATTGCATTTATC-AATACATTAATTTACTAATAA i mm10.chr5 C 0 C 0 e canFam3.chr3 3805597 0 - 91889043 C a score=241854.000000 s hg38.chr4_KI270790v1_alt 105522 92 + 220246 ---CTTTttcattcatcatctat----tcagtaactaagcacc----tgctatgaaccaggactttagctggtatgacggatactaaaatgggtaagtcctag s panTro4.chr4 21492179 92 + 193495092 ---ttttttcattcatcatctat----tcagtaactaagcacc----tgctatgaaccaggactttagctggtatgaaggatactaaaatgggtaagtcctag i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21669388 92 + 198332218 ---ATTTttcattcatcatctat----ccagtaactaagcacc----tgctacgaaccaggactttagctggtatgaaggatactaaaatgggtaagccctag i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20281532 92 - 85365473 ---ATTTttcattcatcatctat----tcagtaactaagcacc----tgctatgaaccaggactttagctggtatgaaggatactaaaatgggtaagtcctag i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16747571 92 + 184069350 ---ATTTttcattcatcatctat----tcagtaactaagcacc----tgctatgaaccagtactttagctggtatgaaggatactaaaatgggtaagtcctag i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20796874 92 + 189454096 ---ATTTttcattcatcatctat----tcagtaactaagcacc----tgctatgaaccagtactttagctggtatgaaggatactaaaatgggtaagtcctag i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16384930 92 + 178775436 ---ATTTTTCATTCATCATCTAT----TCAGTAACTAAGCACC----TGCTATGAACCAGTACTTTAGCTGGTATGAAGGATACTAAAATGGGTAAGTCCTAG i papAnu2.chr5 C 0 I 340 s calJac3.chr3 21227376 92 - 190850796 ---ATTTTTGATTCAtcatttat----tcagtaattaagtacc----tagtatgaaccaggactttagctggtatgaaggatactaaaatgagtaagtcctag i calJac3.chr3 C 0 C 0 s mm10.chr5 49214515 91 + 151834684 ACTGTTTTTCACTCA-CATCTATCCCATCAGCAATTTAGTACCTCCTTACTATGAACAAGAACTTCATCTATT-TGAAAGGTAC-AAAATG---------TAG i mm10.chr5 C 0 C 0 e chlSab2.chr27 19871408 12 - 48547382 I e canFam3.chr3 3805597 0 - 91889043 C a score=137134.000000 s hg38.chr4_KI270790v1_alt 105614 57 + 220246 ccactgtcttcaagtgtttcatggtctaatggaagatgcagaaggcaaaaactcaga s panTro4.chr4 21492271 57 + 193495092 ccactgtcttcaagtgtttcatggtctaatggaagatgcagaaggcaaaaactcaga i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21669480 57 + 198332218 ccactgtcttcaagtgttttgtggtctaatggaagatgcagaaggcaaaagctcaga i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20281624 57 - 85365473 tcgctgtcttcaagtgtttcatggtctaatggaggatgcagaaggcaaaaactcaga i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16747663 57 + 184069350 ctgccgtctttaagtgtttcatggtctaatggaagatgtagaaggtaaaaactcaga i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20796966 57 + 189454096 ctgccgtctttaagtgtttcatggtctaatggaagatgtagaaggtaaaaactcaga i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16385362 57 + 178775436 ccagcgtcTTTAAGTGTTTCATGGTCTAATGGAAGATGCAGAAGGTAAAAActcaga i papAnu2.chr5 I 340 C 0 s calJac3.chr3 21227468 57 - 190850796 tcactgtcttcaagtgtttcatggtctaatggagggtgcagaaggctagaactcaga i calJac3.chr3 C 0 C 0 s mm10.chr5 49214606 55 + 151834684 TTTCTGAGTTCAA--GTTATACAATCGCATGTAGCATGCAGAATGCGATAAAACAAA i mm10.chr5 C 0 I 1331 e chlSab2.chr27 19871408 12 - 48547382 I e canFam3.chr3 3805597 0 - 91889043 C a score=154122.000000 s hg38.chr4_KI270790v1_alt 105671 67 + 220246 tattaaaaatcataagtgctttagtagatcacaattgcagccagaagatgacacttcaaattagaag s panTro4.chr4 21492328 67 + 193495092 tattaaaaatcataagtgctttagtagatcacaattgcagccagaagatgacacttcaaattagaag i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21669537 67 + 198332218 tattaaaaatcataagtgctttagtagatcacaattgcagccagaagatgacacttCAAATTAGAAG i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20281681 67 - 85365473 tattaaaaagaataagtactttagtagATCACAATTGCAGCCAGAAGATGACACTTCAAATTAGAAG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16747720 67 + 184069350 tattaaaaataataagtgctttaacagATCACAATTGCAGCCAGAAGATGAAACTTCAAATTAGAAG i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20797023 67 + 189454096 tattaaaaataataagtgctttaacagATCACAATTGCAGCCAGAAGATGAAACTTCAAATTAGAAG i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16385419 67 + 178775436 tattaaaaataataagtgcttTAACAGATCACAATTGCAGCCAGAAGATGAAACTTGAAATTAGAAG i papAnu2.chr5 C 0 C 0 s calJac3.chr3 21227525 66 - 190850796 tattaaaaatggtaagtgctttaacagATCACAATTGCAGCCAGAAGATT-CACTTCAAATCAGAag i calJac3.chr3 C 0 C 0 e mm10.chr5 49214661 1331 + 151834684 I e chlSab2.chr27 19871408 12 - 48547382 I e canFam3.chr3 3805597 0 - 91889043 C a score=495260.000000 s hg38.chr4_KI270790v1_alt 105738 169 + 220246 gggtgttaccttgggattatgatttcacttctgtaagattccatcttgtctcc-tgtaaaatgggtatagcaatagttacttcatgaaataaagtgatgtaaagaCCATTGTACTCAATGTTTTGTGGAAGAAGTAAGGGTAGGTAATATACACCAGAAATTTTAGGCCC s panTro4.chr4 21492395 169 + 193495092 gggtgttaccttgggattatgatttcagttctgtaagattccatcttgtctcc-tgtaaaatgggtatagcaatacttacttcATGAAATAAAGTGACGTAAAGACCATTGTACTCAATGTTTTGTGGAAGAAGTAAGGGTAGGTAATATACACCAGAAAGTTTAGGCCC i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21669604 167 + 198332218 GGCtgttaccttgggattatgatttcagttctgtacgattc--tctcgtctcc-tgtaaaatgggtatagcaatgcctacttcatgaaataaagtgatgtaaagaCCTTTGTACTCAATGTTTTGTGGAAGAAGTAAGGGTAGGTAATATACACCAGAAATTTTAGGCCC i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20281748 169 - 85365473 GAgtgttaccttgagattatgatttcactgctgtaagattccatcttgtctcc-tgtaaaatcggtatagcaatacctacttcatgaaataaagtgatgtaaagaCCATTGTAGTCAATATTTTGTGGAAGAAGTAAGGGTAGGTAATATACACCAGAAATTTTAGGCCC i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16747787 169 + 184069350 GGgtgttaccttgggattatgatttcagttctgtgagattccatcttgtctcc-tgtaaaatgggcatagtaatacctacttcATGACATAAAGTGATATAAAGACCATTGTACTCAATGTTTTATGGAAGAAGTAAGGGTAGGTAGTATACACCAGAAATTTTGGGCCC i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20797090 169 + 189454096 gggtgttaccttgggattatgatttcagttctgtgagattccatcttgtctcc-tgtaaaatgggcatagtaatacctacttcatgacataaagtgATATAAAGACCATTGTACTCAATGTTTTATGGAAGAAGTAAGGGTAGGTAGTATACACCAGAAATTTTGGGCCC i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16385486 169 + 178775436 GGATGTTACTTTGGGATTATGATTTCAGTTCTGTGAGATTCCATCTTGTctcc-tgtaaaatgggcatagtaATACCTACTTCATGACATAAAGTGATATAAAGACCATTGTACTCAATGTTTTATGGAAGAAGTAAGGGTAGGTAGTATACACCAGAAATTTTGGGCCC i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19871420 169 - 48547382 gggtgttaccttgggattatgatttcagttctgtgagattccatcttgtctcc-tgtaaaatgggcatagcaatacctacttcatgacataaagtgATATAAAGACCATTGTACTCAATGTTTTATGGAAGAAGTAAGGGTAGGTGGTATACACCAGAAATTTTGGGCCC i chlSab2.chr27 I 12 C 0 s calJac3.chr3 21227591 170 - 190850796 gtgtgttaccttgggattacgatttcagttctgtaaggttcagtcttgtcaccttgtagaatgaggatagcaatacctacttcATGAAATAAAGTGATGCAAAGACAATTGTACTCCATGTTTTGTGGAAGAAGTAAGGGTAGGTAATATACATCAGATATTATAGGCCT i calJac3.chr3 C 0 C 0 e mm10.chr5 49214661 1331 + 151834684 I e canFam3.chr3 3805597 0 - 91889043 C a score=797909.000000 s hg38.chr4_KI270790v1_alt 105907 261 + 220246 AAGGGGCAGCATGACTGAGCACATTAATAATTAATTCTGGAAATCCATGAATGGAGTCAGCAGTAGGAATTGGAAAGTGATTGTTTTAAAAAAGTGTTAAGGAGAGTGAAGATCAAAAGAGTAGAAACCATAAG----TAAAGAAAGAATTGTggccaggcgtggtggctcatgcctgtaatcccaatactttgaaaggccaaggtgggcagatcacttga--------------------gtcca-gagtgtgagaccagcctgggcaatgtggcaaaaccctgt s panTro4.chr4 21492564 261 + 193495092 AAGGGGCAGCATGACTGAGCACATTAATAATTAATTCTGGAAATCCATGAATGGAGTCAGCAGTAGGAATTGGAAAGTGATTTTTTTAAAAAAGTGTTAAGGAGAGTGAAGATCAAAAGAGTAGAAACCATAAG----TAAAGAAAGAATTGTggccaggcgtggtggctcacgcctgtaatcccaacactttgaaaggccaaggtgggcagatcacttga--------------------gtcca-gagtgtgagaccagcctgggcaatgtggcaaaaccctgt i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21669771 261 + 198332218 AAGGGGCAGCATGACTGAGCACATTAATAATTAATTCTGGAAATCCATGAATGGAGTCAGCCATAGGAATTGGAAAGTGATT-TTTTAAAAAAGTGTTAAGGAGAGTGAAGATTAAAAGAGTAGAAGTCGTAAG----TAAGGAAAGAATCATggccaggcatggtggctcacgcctgtaatcctaacactttgaaaggccaaggtgggcagatcacttaa--------------------gtccaggagtgtgagaccagtctgggtaatgtagcaaaaccctgt i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20281917 262 - 85365473 AAGGGGCAGCATGACTGAGCACATTAATAATTAATTCCGGAAATCCATGAATGGAGTCAGCAGTAGGAATTGGAAAGCTATTTTTTTTGAAAAGCGTTAAGGAGAGTGAAGAGAAAAAGAGTAGAAATCATAAG----TAAAGAAAGACTCCTggccaggtgtggtggctcacgcctgtaatcccaacactttgaaaggccaaggtgggcagatcacttga--------------------gtccaggagtgcgagaccagcctgggcaatgtggcaaaaccctgt i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16747956 261 + 184069350 AAGGGGCAGCATGACTGAGCACATTAATAGTTAATTCTGGAAATCCATGAATGGAGTCAGCAGTAGGAACTGGAAAGTGATTTTTCTTTAAAA-TGTTAAGGAGAGTGAAGATCAAAAAAGTAGAAATCATAAG----TAAAGAAAGAATCATCAccaggcatggtggttcacacctataatctcaacactttgaagggccaaggtgggcagatcacttga--------------------gtccaggagtgtgagaccagcctgggcaatgtggcaaaaccctgt i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20797259 261 + 189454096 AAGGGGCAGCATGACTGAGCACATTAATAGTTAATTCTGGAAATCCATGAATGGAGTCAGCAGTAGGAACTGGAAAGTGATTTTTCTTTAAAA-TGTTAAGGAGAGTGAAGATCAAAAAAGTAGAAATCATAAG----TAAAGAAAGAATCATCAccaggcatggtggttcacacctataatctcaacactttgaaaggccaaggtgggcagatcacttga--------------------gtccaggagtgtgagaccagcctgggcaatgtggcaaaaccctgt i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16385655 261 + 178775436 AAGGGGCAGCATGACTGAGCACATTAATAATTAATTCTGGAAATCCATGAATGGAGTCAGCAGTAGGAACTGgaaagtgatttttctttaaaa-tgttaaggaGAGTAAAGATCAAAAGAGTAGAAATCATAAG----TAAAGAAAGAATCatcaccaggcgtggtggttcacacctataatctcaacactttgaaaggccaaggtggacatgtcacttga--------------------gtccaggagtgtgagaccagcctgggcaatgtggcaaaaccctgt i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19871589 261 - 48547382 AAGGGGCAGCATGACTGAGCACATTAATAATTAATTCTGGAAATCCATGAATGGAGTCAGCAGTAGGAACTGGAAAGTGATTTTTCTTTAAAA-TGTTAAGGAGAGTGAAGATCAAAAGAGTAGAAATCATATG----TAAAGAAAGAATCGTCAccaggcgtgatggttcacacctataatctcaacactttgaaaggccaaggtgggcagatcacttga--------------------gtccaggagtgtgagaccagcctgggcaatgtggtaaaaccctgt i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21227761 255 - 190850796 AAGGGGCAGAATGACTGAACACATTAATATTTAATTCTAGAAATTTATGAATGGAGTCAGCAGTAAGAATTGGAAAAGGATTTTTTTTAAG---TGTTAAGGAGAATAAAGATCAAAAGAGTAGAAACCA--------TAAAGAAAGAATGGTggccaggagtggtggctcacacctataatcccacccctttgaaaggccaaggtgggcagaacacttga--------------------gtctaggagtgtaagaccagcctgggcaatgtgacaaaacccttt i calJac3.chr3 C 0 C 0 s canFam3.chr3 3805597 271 - 91889043 AAGGGGCAGTGTGGCTGGGCACATCACTAGTCAATTCTGGAGATTCAAGAGAGAAATCCGTAGTAGGAATTAGAATGTGAGTCTTAAAAAAAA-TGCTAA-AAGAGTGACAATC-AAAGGGAAGAAATCATAAGTAACTAAAGGAAAGGTAAGTGAGTAATATGGTGGGCGATAGAAGAAGTTC-------TTgaggcacctgggtggctcagtcagttaagtgtcacattcttggttttggttca-ggtcgtgaactca----gggtcatgggatccagccttgt i canFam3.chr3 C 0 I 65 e mm10.chr5 49214661 1331 + 151834684 I a score=494119.000000 s hg38.chr4_KI270790v1_alt 106168 180 + 220246 ctctac-aaaaaatacaaaaattagctgggcatgatggcacatgtctgtagtcccagctactcaggaggctgagat-ggaaggatctcttgagactgggaggcagaggttgcagtgagccaagatcactcctgtctgggtaatagagcaagatgcctgcctcaaaataaaaaTACGA--TAAAA s panTro4.chr4 21492825 175 + 193495092 ctctac-aaaaaatacaaaaattagctgggcatgatggcacatgtctgtagtcccagctactcaggaggctgagat-gggaggatctcttgagactgggaggcagaggttgcagtgagccaagatcactcctgtctgggtaatagagcaagatgcctgcctcaaaataaaa-----a--taaaa i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21670032 175 + 198332218 ctctac-aaaaaatgcaaaaattagctgggcatgatggcacatgcttgtattcccagctactcaggaggctgaggt-gggaggatctcttgagactaggaggcagaggttgcagtgagccaagatcactcctgcctgggtaatagagcaagatgcctgtgtcaaaatcaaa-----a--taaaa i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20282179 175 - 85365473 ctctac-aaaaaatgcaaaaattagctgggcatgatggcacatgcctgtagtcccagctactcaggaggctgaggt-gggaggatcccttgagactgggaggcagaggttgcagtgagccaagatcactcctgcctgggtaatagagcaagatgcctgtctcaaaatcaaa-----a--taaaa i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16748217 171 + 184069350 ctctacaaaaaaatgcaaaaattagctgggcatgatggtacatgcctagagtcccagctactcaggaggctgagat-gggaggatctcttgagactgggaggcagaggttgcagtgagccaagatcactcctgcctgggtaatagagcaagatgcctgtctcaaaataaaa------------a i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20797520 170 + 189454096 ctctac-aaaaaatgcaaaaattagctgggcatgatggtacatgcctagagtcccagctactcaggaggctgagat-gggaggatctcttgagactgggaggcagaggttgcagtgagccaagatcactcctgcgtgggtaatagagcaagatgcctgtctcaaaataaaa------------a i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16385916 170 + 178775436 cactac-aaaaaatgcaaaaattagctgggcatgatggtacacgcctagagtcccagctactcaggaggctgagat-gggaggatctcttgagactgggaggcagaggttgcagtgagccaagatcactcctgcctgggtaatagagcaagatgcatgtctcaaaataaaa------------a i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19871850 170 - 48547382 ctctac-aaaaaatgcaaaaattagctgggcatgatggtacatgcctagagtcccagctactccggaggctgagat-gggaggatctcttgagactgggaggcagaggttgcagtgagcctagatcactcctgcctgggtaatagagcaagatgcctgtctcaaaataaaa------------a i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21228016 178 - 190850796 ctctac-aaaaaaagcaaaatttagctgggcatggtggtacatgcctgtagtcccagctactcaggagtttaaggtggggaggattgcttgagtctgggaggcagaggctacagtgagccaagatcaatcctgcctgggtgacagagcaagatgcttgtctaaaaTTAAAC-----AATTAAAT i calJac3.chr3 C 0 C 0 e mm10.chr5 49214661 1331 + 151834684 I e canFam3.chr3 3805868 65 - 91889043 I a score=253068.000000 s hg38.chr4_KI270790v1_alt 106348 84 + 220246 TAAAATAAGT--AA-A----AAAATACAGTAGGCATAGAAAAATATTATTAGAGTTTTACCCTCCTATCTAAAACTGTCCCCAAATCCTGT s panTro4.chr4 21493000 86 + 193495092 taaaataagtaaaa-a----aaaaaACAGTAGGCATAGAAAAATGTTATTAGAGTTTTACCCTCCTATCTAAAACTGTCCCCAAATCCTGT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21670207 84 + 198332218 taaaataaga--aa-a----aaaaTATAGTAGGCATAGAAAAATATTATTAGAATTTTACCCTCCTATCTAAAACTGTCCCCAAATCCTGT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20282354 85 - 85365473 taaaataagt-aaa-a----aaaATACAGTAGGCATAGAAAAATGTTATTAGAGTTTTACCCTTCTATCTAAAACTGTCCCCAAATCCTGT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16748388 84 + 184069350 taaagtaagt--aa-a----aaaaTACAGTAGGCATAGAGAAATGTTATTAGAGTTTTACGCTTTTATCTAAAACTGTCCCCAAATCCTTT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20797690 84 + 189454096 taaagtaagt--aa-a----aaaaTACAGTAGGCATAGAGAAATGTTATTAGAGTTTTACGCTTTTATCTAAAACTGTCCCCAAATCCTTT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16386086 84 + 178775436 taaagtaagt--aa-a----aaaaTACAGTAGGCATAGAGAAATGTTATTAGAGTTTTACGCTTTTATCTAAAACTGTCCCCAAATCCTTT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19872020 84 - 48547382 taaagtaagt--aa-a----aaaaTACAGTAGGCATAGAGAAATGTTATTAGAGTTTTATGCTTCTATCTAAAACTGTCCCCAAATCCTGT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21228194 85 - 190850796 TAAATTAAAT--AGTA----AAAACAGAGTAGGCCTAGAAAAATGTTATTAGAGTTTCACCCTTCTATCTAAAACTGTCCCCAAATCCTGT i calJac3.chr3 C 0 C 0 s canFam3.chr3 3805933 76 - 91889043 ttaaataagt--aa-atcttaaaa------------aagaaCATTTCTTAAAACTCCTGACCTTCTTTCTAAAGCTACCCTCAAATTCTGT i canFam3.chr3 I 65 C 0 e mm10.chr5 49214661 1331 + 151834684 I a score=196088.000000 s hg38.chr4_KI270790v1_alt 106432 58 + 220246 TAACTGaatagaaagaaaaataga-aaatga--------aaaagaaaaaATAG---CATTGATGAAAAAT s panTro4.chr4 21493086 58 + 193495092 TAACTGAATAGAAAGAAAAATAGA-AAATGA--------AAAAGAAAAAATAA---CATTGTTGAAAAAT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21670291 58 + 198332218 TAACTGAATAGAAAGAAAAATAGA-AAATGA--------AAAAGAAAAAATAG---CATTGATGAAAAAT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20282439 58 - 85365473 TAACTGaatagaaagaaaaacaga-aaatga--------aaaagaaaaaATAG---CATTGATGAAAAAT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16748472 58 + 184069350 TAACTGAATAGAAAGAAAAATAGA-AAATGA--------AAATGAAAAAATAG---CATTGATGAAAAAG i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20797774 58 + 189454096 TAACTGaatagaaagaaaaataga-aaatga--------aaatgaaaaaATAG---CATTGATGAAAAAC i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16386170 58 + 178775436 Taactgaatagaaagaaaaataga-aaatga--------aaatgaaaaaatag---cattgatgaaaaaC i papAnu2.chr5 C 0 I 2176 s chlSab2.chr27 19872104 58 - 48547382 TAACTGaatagaaagaaaaataga-aaatga--------aaatgaaaaaATAG---CATTGATGAAACAC i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21228279 57 - 190850796 TACCTGAATAGATAAAAAAA-AGA-AAATGA--------AAAAGAAAAAACAG---CATTGATGAAAAAT i calJac3.chr3 C 0 C 0 s mm10.chr5 49215992 63 + 151834684 tagatagatagatagatagatagatagatga-------tagataaatagatagaCACATTGACAATGAAC i mm10.chr5 I 1331 C 0 s canFam3.chr3 3806009 64 - 91889043 TACATGAATAG--AGAAAAATAGG-AAACAACAAAAAGCAGGAGAAAAAAATT---CATTAATGACTAAT i canFam3.chr3 C 0 C 0 a score=1933037.000000 s hg38.chr4_KI270790v1_alt 106490 575 + 220246 AGTTGCAAAGATTTCCCTGAACAATCAGCCCTAGCTAAGT-TTCCAACTAAGCCCAAACTGTCTTATTACACATTCTACAACTCAGGAGGGGATAT-AAGAGAATCCCCTACTTTTCTTGCTCTAGTTTTTAC----AGCTGTTGC--------------CCATGTACTTAGCCAAGGTCATGTGCTCAATCATCCAGTCCCGAG---TTTTGCTT------CTGATGCC-CTGTCTTTCAGTACAGCCTTCTGACCTCTATCTCCAGT----------CTGCTCCAAACCTCCA-TGATGCTTCCCCAGCTCTGGGCCTGGTTGCTGATTGTTGTTTTCCTGAGATTCT-------GACTCCAGTGGTTTAACTAACAACCTTCCTACTTTTT-CTTCTTATAGAGATATCTCAGGCTCCGTACAGAAACTCTTATTAAAACTCACAGCATTAAACCA-GAACACAGACAAATGCCTACAATGGATGTGAAGTGAGCCAAGCAAAAAGCAATAAATAGGGAGTTTTGAGGATTGTTGCAAATAGTAGTAA------TGCTCCAACCAAAACTACTCAAATTTAATTTAAAAAGGCAAAACATCACTCTAGTCAAATAGTATATGTTCACA s panTro4.chr4 21493144 574 + 193495092 AGTTGCAAAGATTTGCCTGAAGAATCAGCCCTAGCTAAGTGTTCCAACTAAGCCCAAACTGTCTTATTACACATTCTACAACTCAGGAGGGGATAT-AAGAGAATCCCCTACTTTTCTTGTTCTAGTTTTTAC----AGCTGTTGC--------------CCATGTACTTAGCCAAGGTCGTGTGCTCAATCATCCAGTCCCGAG---TTTTGCTT------CTGATGCC-CTGTCTTTCAGCACAGGCTTCTGACCTCTATCTCCAAT----------CTGCTCCAAACCTCCA-TGATGCTTCCCCAGCTCTGGGCCTGGTTGCTGATTGTTGTTTTCCTGAGATTCT-------GACTCCA---ACCTAACTAACAACCTTCCTACTTTTTCCTTCTTATAGAGATATCTCAGGCTCCGTACAGAAACTCTTATTAAGACTCACAGCATTAAACCA-GAACACAGACAAATGCCTACAATGGATGTGAAGTGAGCCAAGCAAAAAGCAATAAATAGGGAGTTTTGAGGATTGTTGCAAATAGTAGTAA------TGCTCCGACCAAAAATACTCAAATTTAATTTAAAAAGGCAAAACATCACTCTAGTCAAATAGTATATGTTCACA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21670349 574 + 198332218 AGTTGCAAAGATTTGCCTGAAGAATCAGCCCTAGCTAAGTGTTCCAACTAAGCCCAAACTGTCTTATTACACATTCTACAACCCAGGAGGGGATGT-AAGAGAATCCCCTACTTTTCTTGCTCTAGTTTTTAC----AGCTGTTGC--------------CCATGTACTTAGTCAAGGTCGTGTGCTCAATCATCCAGTCCCGAG---TTTTGCTT------CTGATGCC-CCGTCTTTCAGCACAGGCTTCTGACCTCTACCTCCAAT----------CGGCTCCAAACCTCCC-TGATGCTTCCCCAGCTCTGGGCCTGGTTGCTGATTCTTGTTTTCCTGAGATTCT-------GACTCCAGTGGTTTAACTAACAACCTTCCTAATTTTTTCTTCTTATAGAGATATCTCAGGCTCCGTACAGAAACTCTTACTAAGACTCACAGCATTAAACTA-GAACACAGACAAATGCCTACAATGGATGTGAAGTGAGCCAAGCAAAAAGCAATATATAGGGAGTTTTGAGGATTGTTGCAAATAGTAGTAA------TGCTCCGACCAAAAATACTCAAATTT-TTTTAAAAAGGCAAAACATCACTCTAGTC--ATAGTGTATGTTCACA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20282497 573 - 85365473 AGTTGCAAAGATTTGCCTGAAGAATCAGCCCTTGCTAAGTGTTCCAACTAAACCCAAACTGTCTTATTACACATTCTACAACTCAGGAGGCGATAT-AAGAGAATCCCCTACTTTTCCTGCTCTGGTTTTTAC----ACCTGTTGC--------------CCATGTACTTAGCCAAGGTCGTGTGCTCAATCATCCAGTCCCGAG---TTTTGCTT------TTGATGCT-CTGTCTTTCAGCACAGGCTTCTGACCTCTACCTCCAAT----------CCGCTCCATACCTCCC-TGATGCTTCCCAAGCTCTGGGCCTCGTTGCTGATTTTTGTTTTCCGGAGATTCT-------GACTCCAGTGGTTTAACTAACAACCTTCCTACTTTTTTCTTCTTATAGTGATATCTCAGGCTCTGCACAGAAACTC----TAAGACTCACAGCATTAAACCA-GAACACAGACAAATGCCTACAATGGATGTGAAGTGAGTCAAGGAAAAAGCAATAAATAGGGAGTTTTGAGGATTGTTGCAAATAGTAGCAA------TGCTCCGAACAAAGATACTCAAATTTAATTTAAAAAGGCAAAACATCATTCTAGTCAAATAGTGTATGTTCACA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16748530 573 + 184069350 AGTTGCAAAGATTTGCCTGAAGAATCAGCCCTAGCTAAGTGTTCCAACTAAGTCCAAACTATCTTATTACACATTCTACAACTCAGGAGGGGATATAAAGAGAATCCCCTACTTTTCTTGCTCTAGTTTTTAC----AGCTGTTGC--------------CCATGTACTTAGCCAAGGTCGCGTGCTCAATCATCCAG-CCCGAG---TTTTGCTT------TTGATGCC-----CTTTCAGCACCACCTTCTGAACTCTACCTCCAAT----------CTGCTCCGTACTTTCC-TGATGCTTCCCCAGCTCTGGGCCTGGTTGCTGATTGTTGTTTTTCAGAGATTCT-------GACTCCAGTATTTTAACTAACAACCTTCCTACTTTTTTCTTCTTATGGAGATCTCTCAGGCTCCATACAGAAACTTTTACTAAGACTCACAGCATTAAACCA-GAACACAGACAACTGCCTACAATGGATGTGAAGTGAGCCAAGGAAAAAGTAATAAATAGGGAGTTTTGAGGATTGTTGCAAATCGTAGTAA------TGCTCCGACCAAAGATACTCAAATTTAATTTAAAAAGGCAAAGCATCATTCTAGTCAAATAGTATATATTCACA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20797832 573 + 189454096 AGTTGCAAAGATTTGCCTGAAGAATCAGCCCTAGCTAAGTGTTCCAACTAAGTCCAAACTATCTTATTACACATTCTACAACTCAGGAGGGGATATAAAGAGAATCCCCTACTTTTCTTGCTCTAGTTTTTAC----AGCTGTTGC--------------CCATGTACTTAGCCAAGGTCGCGTGCTCAATCATCCAG-CCCGAG---TTTTGCTT------TTGATGCC-----CTTTCAGCACCACCTTCTGAACTCTACCTCCAAT----------CTGCTCTGTACTTTCC-TGATGCTTCCCCAGCTCTGGGCCTGGTTGCTGATTGTTGTTTTTCAGAGATTCT-------GACTCCAGTAGTTTAACTAACAACCTTCCTACTTTTTTCTTCTTATGGAGATCTCTCAGGCTCCGTACAGAAACTTTTACTAAGACTCACAGCATTAAACCA-GAACACAGACAACTGCCTACAATGGATGTGAAGTGAGCCAAGGAAAAAGTAATAAATAGGGAGTTTTGAGGATTGTTGCAAATCGTAGTAA------TGCTCCGACCAAAGATACTCAAATTTAATTTAAAAAGGTGAAGCATCATTCTAGTCAAATAGTATATATTCACA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16388404 573 + 178775436 aGTTGCAAAGATTTACCTGAAGAACCAGCCCTAGCTAAGTGTTCCAACTAAGCCCAAACTATCTTATTACACATTCTACAACTCAGGAGGGGATATAAAGAGAATCCCCTACTTTTCTTGCTCTAGTTTTTAC----AGCTGTTGC--------------CCATGTACTTAGCCAAGGTCGCGTGCTCAATCATCCAG-CCCGAG---TTTTGCTT------TTGATGCC-----CTTTCAGCACCACCTTCTGAATTCTACCTCCAAT----------CTGCTCCGTACTTTCC-TGATGCTTCCCCAGCTCTGGGCCTGGTTGCTCATTGTTGTTTTTCAGAGATTCT-------GACTCTAGTAGTTTAACTAACAACCttcctacttttttcttcttatggaGATCTCTCAGGCTCCGTACAGAAACTCTTACTAAGACTCACAGCATTAAACCA-GAACACAGACAACTGCCTACAATGGATGTGAAGTGAGCCaaggaaaaagtaataaatagGGAGTTTTGAGGATTGTTGCAAATCGTAGTAA------TGCTCCGACCAAAGATactcaaatttaatttaaaaaggcaaagcaTCATTCTAGTCAAATAGTATATATTCACA i papAnu2.chr5 I 2176 C 0 s chlSab2.chr27 19872162 582 - 48547382 AGTTGCAAAGATTTGACTGAAGAATCAGCCCTAGCTAAGTGTTCCAACTAAGCCCAAACTATCTTATTACACATTCCACAACTCAGGAGGGGATATAAAGAGAATCCCCTACTTTTCCTGCTCTAGTTTTTACAGCTAGCTGTTGC--------------CCATGTACTTAGCCAAGGTCAAGTGCTCAATCATCCAGTCCCAAG---TTTTGCTT------TTGATGCC-CTGTCTTTCATCATGGGTTTCTGACCTCTACCTCCAAT----------CCGCTCCGTACCTTCC-TGATGCTTCCCCAGCTCTGGGCCTGGTTGCTGATTGTTGTTTTGCAGAGATTCT-------GACTCCAGTGGTTTAACTAACAACCTTCCTACTTTTTTCTTCTTATGCAGATCTCTCAGGCTCCATACAGAAACTCTTACTAAGACTCATAGCATTAAACCA-GAACACAGACAACTGCCTACAATGGATGTGAAGTGAGCCAAGGAAAAAGTAATAAATAGGGAGTTTTGAGGATTGTTGCAAATCGTAGTAA------TGCTCCGACCAAAGATACTCAAATTTAACTTAAAAAGGCAAAGCATCATTCTAGTCAAACAGTATATATTCACA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21228336 580 - 190850796 AGTTGTAAAGATTTGCCTGAAGAACAAGCCCTAGCT--GTGTTCCAACTAAGCCCAAACTGTCTTCTAACACATTCTACAACTCAGGAAGTG-TGT-AAGAGATTCCCCTACTTTCCTTGCTCTAGCTTTTAC----TGTTGTTGC--------------CCATGTACTTAGCCAAGGTCATGTGCTCAGTGATCCAGTCCCAAG---TTATGCTT------TTGACTCC-CTGTCTTTCAGAACCAGCTTCTGATCTCTACCACCAAT----------CTGCTCCATACCTCCC-TGATGCTTCCCCAGTTCCGGGCCTGGTTGCTGATTGTTGTTT--CTGAGATCCTTACTCAGGAATCTAGTGGTTTAACTAAAAATCTTCCTACTTTTTTCTTCTTATGCAGATATCTCAGGCTCCATACAGAAACTCTTACTAAGACTCACAGCACTAAACTAGGAACACAGACAAATGCCTACAGTGAATGTGAAGTGAGTCCAGGAAAAAGCAATAAATAGGGAGTTTCGAGGATTGTTGCAAATAGTAGTAA------TGCTCCAACCAAAGATACTCAAATTTAATTTAAAAAGGCAAAACATCATTCTAGTCAAATAGTATATGTTCACA i calJac3.chr3 C 0 C 0 s mm10.chr5 49216055 560 + 151834684 AGTTACAAATATTTGCCCACTTTACCACATATAGTCATATAGTTTACCCAGTCCAAACCCACCTCATAAT-TATTTTAAATCCATGCAGAGAAAAC-AGGAAAGGCCCTTTCTCTTCTTGCTTTAGTTTCTAG----ATCTGTTCCTGTCTAACAGTCAACTGTGCAC-TAGTTA-------GTGCTTAG-AATCAGGGCAC------TGTTGCTT------C--ATCCTTCCATCCTTCAAGGACAGCTCCAGATCCCTGCTTATGGT--------------------CCTCCC-CACTGATCTCTTAGTTCTATGCCAAATTGCTCAGTA----TTTTCTAGGATGCT-------GAGTTCACTGCTTTAACAAGTGAGCTTTTCCCTTCTCTCAACCTTTGAAAA-GTCACAATCTCTGGAGAGAAAAT---ACGGAGATAAGCAAGATGAACCTG-GA--ACAGACAAATGTGTGCAGTCATTATGAAGTGAGCCTTGGAACAAGTAGCTAAGTGGGAATGTTGAGAATTGTGGGATACAATGTTGAGAATTGTGCTTCAAC--AAGGCATTCTAGATCAATCTTAACCTGGAAATCATCACTCTAACCAAACAACATAT-TTCACA i mm10.chr5 C 0 I 1665 s canFam3.chr3 3806073 595 - 91889043 AGTTTAAAATTTTTTGCTTAGTTAACTACCCTAACCAGGTGTTCCAACTAGTCTCAATCTGTCTTATGATGTATCTTAAATTTGAAAAGGGAAAAC-AGGAGAA--CCCTACTTTTCTTGCTCTAGTTCCTGC----ATCTGTTGC--------------TCACATACTTGTCCACGGTTTGGGGTTCAGTCATCCAGTCCTTAGGACTTATATTTGTCACATTGACTCC-TCATCCTTCAGGGCTGGCTTCTGATCCCCACCATCAATCCCCATCTATCCTCTCCACACCTCCCTTGACATTCTACCGGCTATCATCCTGGTTGCAGATTTTCGTTTTGTTGAGACCCT-------GACTCCAATGGTTTAACTAATGTATGCCCTACTTTTTCCCATCAATGCAGATATTCCAGGATCTGGAAAGAAAGCCTTGCCAGGACTTACAGTATAAAACTGGGAACACAGACAAATGCCTACAGAGGATATGAAGTGGGCCAAGGAGAAAGTAATACATAGGGAGTTTC-ATAATTATGGCAAACGGTAGCCA------TGATCCAACCAAAGATATTCCAATTCATTGTAAAGAGGTGAAACACCATTCCAGCCAGAAGACACCCGTCCACA i canFam3.chr3 C 0 C 0 a score=414160.000000 s hg38.chr4_KI270790v1_alt 107065 134 + 220246 -------GGTCAAGAGG--------------ATTCAGTCTGCCACACCTAAATAAACACTTAATGCTATCTAGATCTCTCCAGTTGAAACTGCAGCTGCCTCAGACCCTGAAGTGTGCTGTTCACAGGAAAATGTGTCATAATTTTGCCATCTTA s panTro4.chr4 21493718 134 + 193495092 -------GGTCAAGAGG--------------TTTCAGTCTGCCACACCTAAATAAACACTTAATGCTATCTAGATCTCTCCAGTTGAAACTACAGCTGCCTCAGACCCTGGAGCGTGCTGTTCATAGGAAAATGTGTCATAATTTTGCCATCTTA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21670923 134 + 198332218 -------GGTCAAGAGG--------------ATTCAGTCTGCCACACCTAAATAAACACTTAATGCTATCTAGATCTCTCCAGTTGAAACTGCAGCTGCCTCAGACCCTGGAGCGTGCTGTTCATAGGAAAATGTGTCATAATTTTGCCATCTTA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20283070 134 - 85365473 -------GGTCAAGGGG--------------ATTCAGTCTGCCACACCTAAATAAACACTTAATGCTACCCAGATCTCTCCAGTTGAAACTGCAGCTGCCTCTGACACTGGAGCATGCTGTTCATAGAAAAATGTGTCATGATTTTGCCATCTTA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16749103 130 + 184069350 -------GGTCAAAGGG--------------ATTCAGTCTGCCACACCTAAATAAAC----AATGCTATCTACAGCTCTCCAGTTGAATCTGTAGCTGCCTCTGACCCTGGAGAGTGCTGTTCATAGAAAAATGTGTCATAATTTTGCCATCTTA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20798405 130 + 189454096 -------GGTCAAAGGG--------------ATTCAGTCTGCCACACCTAAATAAAC----AATGCTATCTAGAGCTCTCCAGTTGAATCTGTAGCTGCCTCTGACCCTGGAGAGTGCTGTTCATAGAAAAATGTGTCATAATTTTGCCATCTTA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16388977 130 + 178775436 -------GGTCAAAGGG--------------ATTCAGTCTGCCACACCTAAATAAAC----AATGCTATCTAGAGCTCTCCAGTTGAATCTGTAGCTGCCTCCGACCCTGGAGAGTGCTGTTCATAGAAAAATGTGTCATAATTTTGCCatctta i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19872744 130 - 48547382 -------GGTCAAGGGG--------------ATTCAGTCTGCCACACCTAAATAAAC----AATGCTATCTAGAGCTCTCCAGTTGAATCTGCAGCTGCCTCCAACCCTGGAGCGTGCTGTTCATAGAAAAATGTGTCATAATTTTGCCATCTTA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21228916 134 - 190850796 -------GGTCAAGGGG--------------GCTCGGTCTGCAAGGCCTGAATAAACTCTTAATGCTACCTAGACCTCTCTAGGTGAATCTGCAGCTGCCTCTGACCCTGGAGGGTGCTGTTCATAAAAAAGTGTGTCACAATTTTGACATCTTA i calJac3.chr3 C 0 C 0 s canFam3.chr3 3806668 140 - 91889043 GGCCTGGGGTGGGGGGGGAGCGGGGGGCGGTGATCAGTCTGTAATCCTTAAATACTT----AATGCAGCCTGGAACTTTCCAGGTCAATTTGAAGCTGCCTCTGACCCTAGAGGGTGCTTTTTATATAAAAAGG-----------TGCCATCTTA i canFam3.chr3 C 0 C 0 e mm10.chr5 49216615 1665 + 151834684 I a score=862375.000000 s hg38.chr4_KI270790v1_alt 107199 292 + 220246 TTACTTA-ttttttcctgagatagggtcttgctctatcacccaggctggagtgacgtggtgtgaacatgcctcactgcaacctcaacct-cctaggctcaagcgatggatcgtcctgcctcagcctcctaagtagttgtgaccacaggtatgcataaccacatctgatgaaa-tttttgtagagacagggtatcaccatgttgcccaggctgttcttgaactcctgggctcaagtaatcctcccaccttagcctcccaaagtgctggaattagaggcacgagccaccatgttcgg s panTro4.chr4 21493852 292 + 193495092 TTACTTA-ttttttcctgagatagggtcttgctctgtcacccaggctggagtgacgtggtgtgaacatgcctcactgcaacctcaacct-cctaggctcaagtgatggatcgtcctgcttcagcctcctgagtagttgtgaccacaggtatgcataaccacatctgatgaaa-tttttgtagagacagggtatcaccatgttgcccaggctgttcttgaactcctgggctcaagtaatcctcccaccttagcctcccaaagtgctggaattagaggcatgagccaccacatttgg i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21671057 293 + 198332218 TTACTTA-ttttctcctgagatagggtcttgctctgtcacccaggctggagtgacgtggtgtgaacatgcctcacggcaacctcaacctccctaggctcaagcgatggatcgtcctgcctcagcctcctgagtagttgtgaccacaggtatgcataaccacatctgatgaaa-tttttgtagagacagggtatcaccatgttgcccaggctgttcttgaactcctgggctcaagtaatcctcccaccttagcctcccaaagtgctggaattagaggcacgagccaccacgttcgg i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20283204 292 - 85365473 TTACTTA-ttttttcctgagatagggtcttgctctgtcacccaggctggagtgacgtggcgtgaacatgcctcactgcaaccgcaacct-cctaggctcaagcgatggatcatcctgcctcagctttctgagtaattgtgaccacaggtatgcataaccatatctgatgaaa-tttttgtagagacagggtatcaccatattgcccaggctgttcttgaactcctgggctcaagtaatcctcccaccttagcctcccaatgtgctggaattagaggcaagagccacaacgttcgg i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16749233 289 + 184069350 TTACTTA-ttttttcctgagatagggtcttg--ctgtcacccaggctggagtgatgtggtgtgaacatgcctcattgcaacctcaacct-tctaggctcaagcgatggatcgtcccgcctcggtctcctgagtcgttgtgaccacaggtgtgcacaaccacatctgatgaaa-tttttttagaaacagggtatcaccatgctcccca-gctgttcttgaactcctgggctcaagtaatcctcccaccttagcctcccaaagtgctggaattagaggcacgagccaccacgttcgg i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20798535 290 + 189454096 TTACTTA-ttttttcctgagatagggtcttg--ctgtcacccaggctggagtgatgtggtgtgaacatgcctcattgcaacctcaacct-tctaggctcaagcgatggatcgtcccgcctcggtctcctgagtcgttgtgaccacaggtgtgcacgaccacatctgatgaaattttttttagaaacagggtatcaccatgctcccca-gctgttcttgaactcctgggctcaagtaatcctcccaccttagcctcccaaagtgctggaattagaggcacgagccaccacgttcgg i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16389107 291 + 178775436 ttactta-ttttttcctgagatagggtcttgctctgtcacccaggctggagtgatgtggTGTGAACatgcctcattgcaacctcaacct-cctaggctcaagcgatggatcgtcctgcctcggtctcctgagtcgttgtgaccacaggtgtgcacaaccacatCTGAtgaaa-tttttttagaaacagggtatcaccatgctcccca-gctgttcttgaactcctgggctcaagtaatccgcccaccttagcctcccaaagtgctggaattagaggcacgagccaccacgtttgg i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19872874 291 - 48547382 TTACTTA-ttttttcctgcgaaagggtctttctctatcacccaggctggagtgatgtggtgtgaacatgcctcactgcaacctcaacct-cctaggctcaagcgatggatcgtcttgcctcggcctcctgagtcgttgtgaccacaggtgtgcacaaccacatctgatgaat-tttttttagaaacagggtatcaccatgctcccca-gctgttcttgaactcctgggctccagtaatcctcccaccttagcctcccaaagtgctggaattagaggcacaggccaccacgttcgg i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21229050 292 - 190850796 TTACTTAtttttttcctgagacagagtctcactctgtcactcaggctggagtgatgtggcatgaacatgcttcattgcaacctcaacct-cctaggctcatgggatagatcatcctgtttcagcctactgagtaattgtgaccacaggtatacccaa-cacatctgatgaaa-tatttgtagagacagggtctcaccatgttgcctagactgttcttgaactcctgggctcaaagaatcctcccaccttagcctcccaaagtgctggaattagaggcatgagccaccacattcag i calJac3.chr3 C 0 C 0 e mm10.chr5 49216615 1665 + 151834684 I e canFam3.chr3 3806808 0 - 91889043 C a score=929422.000000 s hg38.chr4_KI270790v1_alt 107491 295 + 220246 ccACTTC--TTTTTTTTAATAGACAAAAAGGCAAAAGGAGGTTTTCACAATAGACAATGAGGCTTAAGCTTGTTTTCTGAGAATCCAACACATTTGGGcacgaaggtctgaagctggtctgctagaggtacattatat-aaaa-gaaattgatatttgattcacctattgttaatactcaggaacattctgaggttggagccagtgccttta-tctattgaacaatcagaaag-aaa-------agaatgacctaagccggcataagctc----cctataagaacagtgaaagacacat-atctaagaagaac s panTro4.chr4 21494144 296 + 193495092 ccACTTC--TTTTTTTTAATAGACAAAAAGGCAAAAGGAGGTTTTCACAATAGACAATGAGGCTTAAGCTTGTTTTCTGAGAATCCAACACATTTGGGCACCAaggtctgaagctggtctgctagaggtacattatat-aaaa-gaaattgatatttgattcacccattgttaatactcaggaacattctgaggttggagccagtgccttta-tctattgaacaagcagaaagaaaa-------agaatgacctaagcaggcataagctc----cctataagaacagttaaagacacat-atctaagaagaac i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21671350 296 + 198332218 ccACTTC--TTTTTTTTAATAGACAAAAAGGCAAAAGGAGGTTTTCACAATAGACAATGAGGCTTAAGCTTGTTTTCTGAGAATCCAACACATTTGGGCACCAaggtctgaagctggcctgctagaggtacattatat-aaaa-gaaattgatatttgattcacccactgttaatactcaggaacattctgaggttggagccagtgccttta-tctattgaacaagcagaaagaaaa-------agaatgacctaagcaggcataagctc----cctataagaacagtgaaagacacat-atctaagaagaat i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20283496 298 - 85365473 ccACTTCTTTTTTTTTTAATAGACAAAAAGGCAAAAAGAGGTTTTCACAATAGACAATGAGGCTTAAGCTTGTTTTCTGAGAATCCAACACATTTGGGCACCAaggtctgaagctggtctgttagaggtacattatat-aaaa-gaaattgatatttgattcacccattgttaatactcaggaacattctgaggttggagccagtgccttta-tctattgaacaagcagaaagaaaa-------agaatgacctaagtgggtgtaagctc----cctataagaacagtgaaagacatat-atctaagaaaaac i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16749522 297 + 184069350 ccACTTCTTTTTTTGTTAATAGACTAAAAGACAAAAGGAGGTTTTCACAATAGACAATGAGGCTTAAGCTAGTTTTCTGAGAATCCAACACATTTGGGCACCAaggtctgaagctggtctgctagaggtacattatat-aaaa-aaaattgatatttgattc-cccattgttcatactcaggaacattctgaggttggagccagtgctttta-tctattgaagaagcacaaagaaaa-------agaatgaccaaagcaggcataaactc----cctgtaagaacaatgaaagacacct-atctaagaagaac i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20798825 298 + 189454096 ccACTTCTTTTTTTGTTAATAGACTAAAAGACAAAAGGAGGTTTTCACAATAGACAATGAGGCTTAAGCTAGTTTTCTGAGAATCCAACACATTTGGGCACCAaggtctgaagctggtctgctagaggtgcattatataaaaa-aaaaatgatatttgattc-cccattgttcatactcaggaacattctgaggttggagccagtgctttta-tctattgaagaagcacaaagaaaa-------agaatgaccaaagcaggcataaactc----cctgtaagaacaatgaaagacacct-atctaagaagaac i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16389398 294 + 178775436 ccacttctttttttgttaataGACTAAAAGACAAAAG--GGTTTTCACAATAGACAATGAGGCTTAAGCTAGTTTTCTGAGAATCCAACAC-TTTGGGCACCAAGGTCTGAAGCTGGTCTGCTAGAGgtacattatat-taaa-aaaattgatatttgatTC-CCCATTGTTAATACTCAGGAACATTCTGAGGTTGGGACCAGTGCTTTTA-TCTATTgaagaagcacaaagaaaa-------agaatgacaaaagcAGGCATAAACTC----CCTGTAAGAACAATGAAAGACACCT-ATCTAAGAAGAAC i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19873165 298 - 48547382 ccACTTCTTCTTTTGTTAATAGACTAAAAGACAAAAGGAGGTTTTCACAATAGACAATGAGGCTTAAGCTAGTTTTCTGAGAATCCAACACATTTGGGCACCAaggtctgaagctggtctgctagaggtacattatat-taaa-aaaattgatatttgattcacccactgttaatattcaggaatattctgaggttggagccagtgccttta-tctattgaagaagcacaaagaaaa-------agaatgaccaaagcaggcataagctc----cctgtaagaacagtgaaagacacct-atctaagaagaac i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21229342 291 - 190850796 ccACTTC--TTTTT-------GATGAAAAGGCAAAAGGAGGTTTTTATAATAGACAACAATGCTTAATCTAGTTTTCTGAAGATCCAACACATTTGGGCACAAagatctgaagctggtctgctagaagaacattataa-aaaaggaaactgatatttaattcagccattcttaataccaaggaacattctgtggttggagccagtaccttta-cctattgaacaagcagacaGAAAA-------AGAATGGCCTACGTGGGCATAAGCGC----CCTATAAGAATAGTGAAAGACACATAATCTACAAAGAAC i calJac3.chr3 C 0 I 390 s canFam3.chr3 3806808 304 - 91889043 CTACCTT--TTTTTTTTAACAGCCTAAAAGACTTAAACTAGCTTTCCCAATAGACA---AGACCCAAGCTGGTTTTCTTAAGATCCAGTGCACTAGGACACAAAGGCCTCAAGCCAGCCCACTAGGGTTACATCACAT-GAAA-GAAATAGCTGTTTCATTT-GCCACTGCTGTcactcagaaatgttctgaggttggtgccagtacttttcttctattggacaagcaggcattacagttagtcagaatgacctaagagggaataccctccaatccctaaagatttgcaaatggcacac-atctaagaagacc i canFam3.chr3 C 0 C 0 e mm10.chr5 49216615 1665 + 151834684 I a score=1495767.000000 s hg38.chr4_KI270790v1_alt 107786 451 + 220246 ctaaagggatcctcaccctacttcagggctgccattggcaactgg-cacctcaaatactgggag-gccaggcaactttgcctttcaactgtgagtgctggagagctccttg----ctgtcactgtcttcatgctg----cgaagttattgtatcctttgctcatattaaagatgtatctttagcctggaatcattggtacctttctgtcaatcactgtcacc-aGGTAGCAACTACCAGGTAATTATTCACAGATGTACAAATGATGTATAATTAAAAACTGCTTGCTA--------------------------------AAGTCTTTTAATGACTTTACCCCCAAGATGTTCCTTATTTGATCTCTGGGACAAG-----------AAAAAACGGGCCCTTCTGAGTATGTTAATTGAGGTCATAATTGGCTGATATGTATAATCAGTTTTTCCATGTGTTTTCTCAACCTTTTGCCTGCCTATCCTGCAATTCCACACCAATT s panTro4.chr4 21494440 451 + 193495092 ctaaagggatcctcaccctacttcagggctgccattggcaaccgg-cacctggaagagtgggag-gccaggcaactttgcctttcaactgtgagtgctggagagctccttg----ctgtccctgtcttcatgctg----tgaagttattgtatcctttattcatattaaagatgtatctttagcctggaatcattggtacctttctgtcaatcactgttacc-aGGTAGCAACTACCAGGTAATTATTCACAGATGTACAAATGATGTATAATTAAAAACTGCTTGCTA--------------------------------AAGTCTTTTAATGACTTTACCCCCAAGATGTTCCTTATTTGATCTCTGGGATAAG-----------AAAAAACGGGCCCTTATGAGTATGTTAATTGAGGTCATAATTGGCTGATATGTATAATCAGTTTTTCCATGTGTTTCCTCAACCTTTTGCCTGCCTATCCTGCAATTCCACACCaatt i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21671646 449 + 198332218 ctaaagggatcctcaccctacttcagggctgccgttggcaactgg-cacctcgaagactgggag-gccagggaactttgcctttcaactgtaagtgctggagagctccttg----ctgtcactgtcttcatgctg----tgaagttattgtatcctttactcatattaaagatgtatctttagcctggaatcattggtacctttctgtcaatcactgtcacc-aGGTAGCAACTACCAGGTAATTATTCACAGATGTACAAATGATGTATAATTAAAAACTGCTTGCTA--------------------------------AAGTCTTTTAATGACTTTA--CCCAAGGTGTTCCTCATTTGATCTCTGGGATAAG-----------AAAAAACGGGCCCTTATGAGTATGTTAATTGAGGTCATAATTGGCTGATATGTATAATCAGTTTTTCCATGTGTTTCCTCAACCTTTTGCCTGCCTATCCTGCAATTCCACACCaatt i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20283794 448 - 85365473 ctaaagggaccctcaccctacttcagggctgccattggcaactgg-cacctcgaaggctgggag-gtcagggaactttgcctttcaactgtgagtgctggagagctccttg----ctgtcactgtcttcatgttg----tgaagttattgtatcctttatgcatattaaagatgtatctgtagcctggaatcactggtacctttctgtcaatcactgtcacc-aGGTAGCAACTACCAGGTAATTATTCACAGATGTACAAATGATGTATAATTAAAAACTGCTTGCTA--------------------------------AAGTCTTTTAATGACTTTA--CCCAAGGTGTTCCTCATTTGATCTCTGGGATAAG-----------AAAAAACGGGCCCTTATGAGTATGTTAATTGAGGTCATAATTGGCTGATATGTATAATCAGTTTTTCCATGTGTTT-CTCAACCTTTTGCCTGCCTATCCTGCAATTCCACACCAATT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16749819 448 + 184069350 ctaaagggatcctcaccctacttcagggctgccattggcaactgg-cacctcgaagactgtgagtgttggagag------ctttcaactgtgagtgttggagagctccttgctgtctgtcactgtcttcatgctg----tgaagttattgtatcctttactcatatcaaagatgtatctttagcctggaatcactggtacctttctgtccatcactgtcacc-aGGTGGCAACTACCAGGTAATTATTCACAGATGTACAAATGATGTATAATTAAAAACTCCTTGCTA--------------------------------AAGTCCTTTAATGACTTTA--CCCAAGGTGTTCCTCATTTGATCTCTGGGATAAG----------AAAAAAATGGGCCCTTATGAGTATGTTAATTGAGGTCATAATTGGCTGATAGGTATAATCAGTTTTTCCATGTGTTT-CTCAACCTTTTGCCTGCCTATCCTGCAATTCCACACCaatt i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20799123 448 + 189454096 ctaaagggatcctcaccctacttcagggctgccattggcaactgg-cacctcgaagactgtgagtgttggagag------ctttcaactgtgagtgttggagagctccttgctgtctgtcactgtcttcatgctg----tgaagttattgtatcctttactcatatcaaagatgtatctttagcctggaatcactggtacctttctgtcaatcactgtcacc-aGGTGGCAACTACCAGGTAATTATTCACAGATGTACAAATGATGTATAATTAAAAACTCCTTGCTA--------------------------------AAGTCTTTTAATGACTTTA--CCCAAGGTGTTCCTCATTTGATCTCTGGGATAAG----------AAAAAAATGGGCCCTTATGAGTATGTTAATTGAGGTCATAATTGGCTGATAGATATAATCAGTTTTTCCATGTGTTT-CTCAACCTTTTGCCTGCCTATCCTGCAATTCCACACCAATT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16389692 453 + 178775436 CTAAAGGGATCCTCACCCTACTTCAGGGCTGCCATTGGCAACTGG-CACCTCGAAGACTGGGAG-GCCAGGGAACTTTGCCTTTCAACTGTGAGTGTTGGAGAGCTCCTTGCTGTCTGTCACTGTCTTCATGCTG----TGAAGTTATTGTATCCTTTACTCATATCAAAGATGTATCTTTAGCCTGGAATCATTGGTACCTTTCTGCCAATCACTGTCACC-AGGTGGCAACTACCAGGTAATTATTCACAGATGTACAAATGATGTATAATTAAAAACTCCTTGCTA--------------------------------AAGTCTTTTAATGACTTTA--CCCAAGGTGTTCCTCATTTGATCTCCGggataag----------aaaaaaaagggcCCTTATGAGTATGTTAATTGAGGTCATAATTGGCTGATATGTATAATCAGTTTTTCCATGTGTTT-CTCAACCTTTTGCCTGCCTATCCTGCAATTCCAcaccaatt i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19873463 453 - 48547382 ataaagggatcctcaccctacttcaaggctgctattggcaactgg-cacctcgaagactgggag-gccagggaactttgcctttcaactgtgagtgttggagagctccttgctgtctgtcactgtcttcatgctg----tgaagttattgtatcctttactcatatcaaagatgtatctttagcctggaatcattggtacctttctgtcaatcactgtcacc-aGGTGGCAACTATCAGGTAATTATTCACAGATGTACAAATGATGTATAATTAAAAACTCCTTGCTA--------------------------------AAGTCTTTTAATGACTTTA--CCCAAGGTGTTCTTCATTTGATCTCTGGGATAAG----------AAAAAAATGGGCCCTTATGAGTATGTTAATTGAGGTCATAATTGACTGATATGTATAATCAGTTTTTCCATGTGTTT-CTCAACCTTTTGCCTGCCTATCCTGCAATTCCACACCAATT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21230023 448 - 190850796 ctaaagggatcctcaccctacttcagagctgtcattggcaactgc-catct-aaagactggaag-gccagg--------cctttcaactgtgagtgctggagagctccttgctgtctgtcaccttcttcatgcagttattgtagttattgtatcctttactcatattaaagctgtatctttagcctggaatcattggtacctttctgtcaatcacagtcacT-GGGTAACAACTACCAGGTAATTATTCACAGATGTACAAATATTGTATAATTAAAAACTGCTTGATA--------------------------------AAGTCTTTTAATGACTTTA--CCCAAGGTGTTCCTCATTTTGTCTCTGGGATAAG----------AAAAAAACGAGCACTTAGGAGTATGTTAATTGAGGTCATAATTGGTTGATATGTGTAAGCAGTTTTTTCATGTATTT-CTCAACCTTTTGCCAGACTATCCTGCAATTAGACCCCAATT i calJac3.chr3 I 390 C 0 s canFam3.chr3 3807112 485 - 91889043 ccgagggtatcctcatcctaattaggtgctgacactggcaactggacactccaaggacttggag-gtcaggatatcttgtccctccattttgtgtgatggtcccttccttgctctccatcgttatcttcaggcag---gtgatgtttctgcaccctttatttatattaaagatgtgtcctttgtctggaaacactggtagcttcctgtcaactactgtcaccTGGGTAACAATTGCCAGGTAATTATTTACAGATGTACAAATGGCATATAATTAAGCCCTGCTAGTTAttcttcttcttttttttttttttttttGTTACTCATTTTTTAATGACTTTG-------------CTTCATTTTATCTCTGGGATAAGGAAAAAAAAAAAAAAAAAAACACCTTGCCCACATACTCACTGAGGCCATAAGTGGCCAAT--TTATAATCAATTCTTCCATGAGTTT-CTCAACCTTTTGCCCCTCTATCTCGTAACTCCTCCCCaatt i canFam3.chr3 C 0 C 0 e mm10.chr5 49216615 1665 + 151834684 I a score=2153897.000000 s hg38.chr4_KI270790v1_alt 108237 595 + 220246 --------AAAAAAGAAATTTATTAAATATATGTGTTCTTCTTTCATTGC-AAAAT---CTCTTATTCCCCAGAGTATTTCAGAAAGGGCAAGACAACCTTG-CTTTCCAGCTGT---TTGCAAGCATTATGCCTTTGAGTCATTATGCAGAGCTTTTTACAAAATCAAGACATGTATTCATAATATCTGTTAA---TTTAACATGTTTATTTATATCACTGGAGCATGACTTCTGCATATAAAGAAAGACATA--Ttt-taatagttaaaatttaattaaaa--c----tataaaactacataattctccatatttataatttTTAAATAATCAGCAAAATCCTGAATAAGAGGCATCA-ACTTAAAAAAA----TAGTTTGAAAATGATTTCTCTCAAGGAAGG---AGGAAGGAGTGACCTGAATTTTACAAATAGAAACTT------------TCTAAGTAACAC-CTGAATTGTCAGGGCAGGTT----------ATACTTCACAAAATCAAATCAATTTCTG----TGACTTGTTTTT-T--ATATTTCTTCTGCCATCACTCAGAACTTAATA--ACT-GGGAAGATTTCAAATACAATAGGTGAAAATATCCAGTCATTTATATTTTTTGTATAAGTATTTAACATTCAATATGAT s panTro4.chr4 21494891 599 + 193495092 --------aaaaaacaaatttattaaatatatGTGTTCTTCTTTCATTGC-AAAAT---CTCTTATTCCCCAGAGTATTTCAGAAAGGGCAAGACAACCTTG-CTTTCCAGCTGT---TTGCAAGCATTATGCCTTTGAGTCACTATGCAGAGCTTTTTACAAAATCAAGACATGTATTCATAATATCTGTTAA---TTTAACATGTTTATTTATATCACTGGAGCATGACTTCTGCATATAAAGAAAGACata--att-taatagttaaaatttaattgaaa--ctatttataaaactatataattctccatatttataatttttaaataatCAGCAAAATCCTGAATAAGAGGCATCA-ACTTAAAAAAA----TAGTTTGAAAATGATTTCTCTCAAGGAAGG---AGGAAGGAGTGACCTGAATTTTACAACTAGAAACTT------------TCTAAGTAACAC-CTGAATTGTCAGGGCAGGTT----------ATACTTCACAAAATCAAATCAATTTCTA----TGACTTGTTTTT-T--ATATTTCTTCTGCCATCACTCAGAACTTAATA--ATTGGGGAAGATTTCAAATACAATAGGTGAAAATATTCAGTCATTTATA-TTTTTGTATAAGTATTTAACATTCAATATGAT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21672095 600 + 198332218 --------aaaaaacaaatttattaaatatatGTGTTCTTCTTTCATTGC-AAAAT---CTCTTATTCCCCAGAGTATTTCAGAAAGGGCAAGACAACCTTG-CTTTCCAGCTGT---TTGCAAGCATTATGCCTTTGAGTCATTATGCAGAGCTTTTTACAAAATCAAGACATGTATTCATAATATCTGTTAA---TTTAACATG----TTTATATCACTGGAGCATGACTTCTGCATATAAAGAAAGACata--ttt-taatagttaaaatttaattaaaa--ctatttataaaaCTACATCATTCTCCatatttataatttttaaataatCAGCAAAATCCTGAATAAGAGGCATCA-ACTTAAAAAAA----TAGTTTGAAAATGATTTCTCTCAAGGAAGG---AGGAAGGAGTGACCTGAATTTTACAACTAGAAACTT------------TCTAAGTAACAT-CGGAATTGTCAGGGCAGGTT----------ATACTTCACAAAATCAAATCAATTTCTGAATATGACTTGTTTTTCT--GTATTTCTTCTGCCATCACTCAGAACTTAATA--ATTGGGGAAGATTTCAAATACAATAGGTGAAAATATTCAGTCATTTATA-TTTTTTTATAAGTATTTAACATTCAGTATGAT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20284242 599 - 85365473 --------AAGAAACAAATTTATTAAATGAATGTGTTCTTGTTTCTTTGC-AAAAT---CTCTTATTCCCCAGTGTATGTCAGAAAGGGCAAGACAACCTTG-CTTTCCAGCTGT---TTGCAAGCATTATGCCTTTGAGTCATTATGCAGAGCTTTTTAAAAAATCAAGACATGTATTCATAATATCTGTTAA---TTTAACATGTTTATTTATATCACTGGAGCATGACTTCTGCATAT----AAAGACATA--TTT-TAATAGTTAACATTTAATTAAAA--CTATTTATAAAACTACATAATTCTCCATATTTATAATTTTTAAATAATCAGCAAAATCCTGAATAAAAGGCATCA-ACTTAAAAAAA----TAGTTTGAAAATGATTTCGCTCAAGGAAGG---AGGAAGGAGTGACCTGAATTTTACAACTAGAAACTT------------TCTAAGTAACAC-CTGAATTGTCAGGGCAGGTT----------ACACTTCACAAAATCAAATCAATTTCTGAATATGACTTGTTTTT-T--ATATTTCTTCTGCCATCACTCAGAACTTAATA--ATTGGGGAAGCTTTCAAATACAATAGGTGAAaatattcagtcatttata-tttttgtgtaagtatttaacattcaatatGAT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16750267 600 + 184069350 --------aaaaaacaaatttattaaatatatGTGTTCTTCTTTCATTGC-AAAAT---CTCTTATTCCCCAGAGTATTTCAGAAAGGGCAAGACAACCTTG-CTTTCCAGCTGT---TTTCAAGCATTATGCCTTTGAGTCATTATGCAGAGCTTTTTACAAAATCAAGACATGTCTTCATAATATCTGTTAA---TTTAACATGTTTATTTATATCACTGGAGCATGACTTCTGCATATAAAGAAAGGCata--ttt-taatagttaaaatttaattaaaa--CTGTTTATAAAACCACATAATTCTC--TATTTATAACTTTAAAATAATCGGCAAAATCCTGAATAAGAGGCATCA-ACTTAAAAAAA----CTGTTTGAAAATGATTTCTTTCAAGGAAGG---AGGAAGGAGGGACCTGAATTTTACAACTAGAAACTT------------TCTAAGTAACAC-CTGAATTGTCAGGGCAGTTT----------ATACTTCACAAAATCAAATCAATTTCTGAATATGACTTGTTTTT-T---TATTTCTTCTGCCATCACTCAGACCTTAATA--ATTGGGGAAGCTTTCAAATACAATAGGTGAAAATATTCAGTCATTTATA-TTTTTGTATAAGTATTTAACATTCAATGTGAT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20799571 602 + 189454096 --------AAAAAACAAATTTATTAAATATATGTGTTCTTCTTTCATTGC-AAAAT---CTCTTATTCCCCAGAGTATTTCAGAAAGGGCAAGACAACCTTG-CTTTCCAGCTGT---TTGCAAGCATTATGCCTTTGAGTCATTATGCAGAGCTTTTTACAAAATCAAGACATGTCTTCATAATATCTGTTAA---TTTAACATGTTTATTTATATCACTGGAGCATGACTTCTGCATATAAAGAAAGGCATA--TTT-TAATAGTTAAAATTTAATTAAAA--CTGTTTATAAAACCACATAATTCTCTATATTTATAACTTTAAAATAATCGGCAAAATCCTGAATAAGAGGCATCA-ACTTAAAAAAA----CAGTTTGAAAATGATTTCTTTCAAGGAAGG---AGGAAGGAGGGACCTGAATTTTACAACTAGAAACTT------------TCTAAGTAACAC-CTGAATTGTCAGGGCAGTTT----------ATACTTCACAAAATCAAATCAATTTCTGAATATGACTTGTTTTT-T---TATTTCTTCTGCCATCACTCAGACCTTAATA--ATTGGGGAAGCTTTCAAATACAATAGGTGAAAATATTCAGTCATTTATA-TTTTTGTATAAGTATTTAACATTCAATGTGAT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16390145 602 + 178775436 --------aaaaaacaaatttattaaatatatgtgttcTTCTTTCATTGC-AAAAT---CTCTTATTCCCCAGAGTATTTCAGAAAGGGCAAGACAACCTTG-CTTTCCAGCTGT---TTGCAAGCATTATGCCTTTGAGTCATTATGCAGAGCTTTTTACAAAATCAAGACATGTCTTCATAATATCTGTTAA---TTTAACATGTTTCTTTATATCACTGGAGCATGACTTCTGCATATAAAGAAAGGcata--ttt-taatagttaaaatttaattaaaa--ctgTTTATAAAACCACATAATTCTCtatatttataactttaaaataatcgGCAAAATCCTGAATAAGAGGCATCA-ACttaaaaaaa----cagtttgaaaatgaTTTCTTTCAAGGAAGG---CGGAAGGAGGGACCTGAATTTTACAACTAGAAACTT------------TCTAAGTAACAC-CTGAATTGTCAGGGCAGTTT----------ATACTTCACAAAATCAAATCAATTTCTGAATAtgacttgttttt-t---tatttcttctgccaTCACTCAGACCTTAATA--ATTGGGGAAGCTTTCAAATACAATAGGTGAAAATATtcagtcatttata-tttttgtataagtATTTGACATTCAATGTGAT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19873916 601 - 48547382 --------AAAAAACAAATTTATTAAATATATGTGTTCTTCTTTCATTGC-AAAAT---CTCTTATTCCCCAGAGTATTTCAGAAAGGGCAAGACAACCTTG-CTTTCCAGCTGT---TTGCAAGCATTATGCCTTTGAGTCATTATGCAGAGCTTTTTACAAAATCAAGACATGTCTTCATAATATCTGTTAA---TTTAACATGTTTATTTATATCACTGGAGCATGACTTCTGCATATAAAGAAAGGCATA--TTT-TAATAGTTAAAATTTAATTAAAA--CTGTTTATAAAACCACATAATTCTCTGTATTTATAACTTTAAAATAATCGGCAAAATCCTGAATAAGAGGCATCA-ACTTAAAAAAA----CAGTTTGAAAATGATTTCTTTCAAGGAAGG---AGGAAGGAGGGACCTGAATTTTACAACTAGAAACTT------------TCTAAGTAACAC-CTGAATTGTCAGGGCAGTTT----------ATACTTCACAAAATCAAATCAATTTCTGAATATGACTT-TTTTT-T---TATTTCTTCTGCCATCACTCAGACCTTAATA--ATTGGGGAAGCTTTCAAATACAATAGGTGAAAATATTCAGTCATTTATA-TTTTTGTATAAGTATTTAACATTCAATGTGAT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21230471 598 - 190850796 --------AAAAAACAAATTTATAGAATATATGTGTCCTTCTTTCATTGC-AAAAT---CTCTTATTCCCCAGAGTATTTCAGAAAGGGCAAGACAACTTTG-CTTTCCAGCTGT---TTGTAAGTGTTATGCCTTTGAGTCATTATGCGGAGCTTTTTACAAAATCAAGACATGTATTCATGATATCTGTTAA---TTTAACATGTTTATTTATATCACCGGAGCATGACTTCTGCATAT------AGACata--ttt-taatagttaaaatttaataaaaa--ctatttataaaactacataattctccatatttataatttttaaataatCAGCAAAATCCTGAATAAGAGGCTTCA-ACTTAAAAAAA----TAGTTTGAAAATGATTTCTCTCAAGGAAAG---AGATAAAAGTGACCTGAATTTTACAACTAGAAACTT------------TCTAAGTAACAC-CTGAATTATCAGGGCAGGttaatttttaaaatatttta-aaaatcaaattaatttctaaatatgatttgttttt-t--atatttattttGCC----CTCAGAACTTAATA--ATTGGGGAAACTTTCAAATATAATAGGTGAAAATATTTAGTCATTCATA-TTTTTGTATAAGTA----ACATTCAATATGAT i calJac3.chr3 C 0 C 0 s mm10.chr5 49218280 598 + 151834684 --------aaaaaaaaaaaTAGTTAATTAATTGTGTGCATTTATTATTTT-CAAGTATACACCATTTTTCCAATTCACTACACAAA-GGCAATACTTTCTGT-TTTTCCAAATATGAACTAAGACCATTA----TTTAACTTATTATGCAGAACTTGCTGTGAAAGCAAGGGGGGTATTC-TAACATATGTTAACGTTTTGGCAC--------------TTAGGACATTGTGTTCAGATACATAGGAAGATGTA--TTTGTAGTAGTTTAAAGAAGATTAAAGACTTTTTTATGAAATTAATGAATGTTCTAT-TGTTTAATCTTTAAGTCTGCCACCAACATCTGAATAGTAAGCATCCTATTTCAGAAAAGTAGTAGTTTGGACTAAATTTATGTCAATTTATGTAAAGGATTCAGTGGCCAGTCTGTGAGAAATAGAATCTCAAAGAGTGAATGTGAAAATAATATACTAAATTAT-AGGGCAGAAT----------CTATTTAGAAAAATCAACCCAG-TTCTAAATATGACTTCTATCT-T------------------CACTTAGAACTCTATAGGACTAAAAAAAAGTGCTAGTATAATTGGTGAAAATATTTAATCACTAATA--TTTTGTGCAAATATTTAACCTTGGCTATTAT i mm10.chr5 I 1665 I 119 s canFam3.chr3 3807597 604 - 91889043 aaaaaaaaaaaaaacaagtttattaaatatatGTGTTCTTTTCTCCTAGTAAAAAT---CTCTGGATCCCTGGGGTACTATAGAAAGAGGAACACATCCCTGATTTTCCAGCTGT---TAGGGGGAGCTATGTCCATGAGTCATTATGCAGAGCTCTTTATGAAATCAAAAAATGTATTCATGATAACTGTTAA---TTTAACATGTTTATTTATATCACTGGAGCATGACTCCTGCATATAAAGGAAGACAGGGCGTG-TAGTGGAAAAAATTGATTCTAGA--CAATTTATGAAACTGTATAAATCTCCATTTTTATCATTTTTAAGATATC----AAAGCCTGAATAAGAGGCATCA-ACATTAGAAAG----TGGCTTGAAGATAATTCATGCCAAGGAAAG---GGA-------GACCTGAATGTCCCA--TCAAAACTT------------GTGGAGTTATAC-CTGAATTGTCAGGACAGATT----------CTAATTAGAAAATTCAAATCTATTTCTGAATGTGACTTGTATTT-TTAATATTTCTACTGTCTCCACTCAGAACTTAATA--CCTGAGAAAACCTTCAAATACAATAGATGAAAATATGTAATCATTCATA-TTTTTGTATAAATATTTAACATTCAATATGAT i canFam3.chr3 C 0 C 0 a score=245556.000000 s hg38.chr4_KI270790v1_alt 108832 69 + 220246 GGAGCTTATGACATCACTTAAATGAGATTAAAGATGTCTGAGCTTAGCCAACTACAATACTAGCAGCAA s panTro4.chr4 21495490 69 + 193495092 AGAGCTTACAATATCACTTAAATGAGATTAAAGATGTCTGAGCTTAGCCAACTACAATACTAGCAGCAA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21672695 69 + 198332218 AGAGCTTACGACATCACTTAAATGAGATTAAAGATGTCTGATCTTAGCCAACTACAATACTAGCAGCAA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20284841 69 - 85365473 AGAGCTTACGACATCACTTAAATGAGATTAAAGATGTCTGAGCTTAGCCAACTACAATACTAGCAGCAA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16750867 69 + 184069350 AGAGCTTATGACATCATTTAAATGAGATTAAAGATGTCTGAGCTTAGCCAACTACAATACTAGCAGCAA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20800173 69 + 189454096 AGAGCTTATGACATCATTTAAATGAGATTAAAGATGTCTGAGCTTAGCCAACTACAATACTAGCAGCAA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16390747 69 + 178775436 AGAGCTTATGACATCATTTAAATGAGATTAAAGATGTCTGAGCTTAGCCAACTACAATACTAGCAGCAA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19874517 69 - 48547382 AGAGCTTATGACATCATTTAAATGAGATTAAAGATATCTGAGCTTAGCCAACTACAATACTAGCAGCAA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21231069 69 - 190850796 AGAGCTTATGACATCATTTAAAGGAGATTAAAGATGCCTAAGCTCAACCAACTACAATACTAGCAGCAA i calJac3.chr3 C 0 C 0 s canFam3.chr3 3808201 69 - 91889043 AGGTCTTGCATAATTACTTAAATGCAATTAAGGAAGTTTGGATTTAGCCAAATATAGTACTAGGAGTAA i canFam3.chr3 C 0 I 275 e mm10.chr5 49218878 119 + 151834684 I a score=835176.000000 s hg38.chr4_KI270790v1_alt 108901 279 + 220246 AT--GTCCTTGTGTTCAGTGCAGTACTATGATTTC-----------CAATTAGTTTT-TTCCATCGGCTTAATTTGAAATCATAATATCATAAACATTCTGAATTTGACATTGTGTGTCTTCATTTT-AATAGCAGGAAAACAGATTTGTAATTTTTGAGCACTTTATAGATGGTGAATTATATCACACACTGAGTCAAATCTTATTACTAAACAATTATGAATTTACCAGCTAGTGACTGGTATCATGCTACTTGCTAGAAAAATTACTAAACATAAGATATGCTTTATATGA s panTro4.chr4 21495559 279 + 193495092 AT--GTCCTTGTGTTCAGTGCAGTATTATGATTTC-----------CAGTTAGTTTT-TTCCATCGGCTTAATTTGAAATCATAATATCATAAACATTCTAAATTTGACATTGTGTGTCTTCATTTT-AATAGTAGGAAAACAGATTTGTAATTTTTGAGCACTTTATAGATGGTGAATTATATCACACACTGAGTCAAATCTTATTACTAAACTATTATGAATTTACCAGCTAGTGATTGGTATCGTGCTACTTGCTAGAAAAATTACTAAACATAAGATATGCTTTATATGA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21672764 279 + 198332218 AT--GTCCTTGTGTTCAGTGCAGTACTATGATTTC-----------CAATTAGTTTT-TTCCATCGGCTTAATTTGAAATCATAATATCATAAACATTCTAAATTTGACATCGTGTGTCTTCATTTT-AATAGTAGGAAAACAGATTTGTAATTTTTGAGCACTTTATAGATGGTGAATTATATCGCATACTGAGTCAAATCTTATTACTAAACAATTATGAATTTACCGGCTAGTGATTGGTATCATGCTACTTGCTAGAAAAATTACTAAACATAAGATATGCTTTATATGA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20284910 278 - 85365473 AC--GTCCTTGTGTTCAGTGCAGTACTATGATTTC-----------CAATTAGTTTT-TTCCATCGGCTTAATTTGAAATCATAATATCATAAACATTCTAAATTTGACATTGTGTGTCTTCA-TTT-AATAGTAGGAAAACAGATTTGTAATTTTTGAGCCCTTTATAGATGGTGAATTATATCACACACTGAGTCAAATCTTATTACTAAATAATTATGAATTTACCAGCTAGTGATTGGCATCATGCTACTTGCTAGAAAAATTACTAAACATAAGATATGCTTTATATGA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16750936 279 + 184069350 AT--GTCCTTGTGTTCAGTGCAGTACTATGATTTC-----------CAATTAGTTTT-TTCCATTGGCTTAATCTGAAATCATAATATCATAAACATTCTAAATTTGACAGTGTGGATCTTCATTTT-AGTAGTAGGAAAACAGATTTGTAATTTTTGAGCACTTTATAGATGGTGAATTGTATCACACACGGAGTCAAATCTTATTACTAAACAATTATGAATTTATCAGCTAGTGATTGGTTTCATGCTACTTGCTAGAAAAATTACTAAACATAAGATATGCTTTATATGA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20800242 279 + 189454096 AT--GTCCTTGTGTTCAGTGCAGTACTATGATTTC-----------CAATTAGTTTT-TTCCATTGGCTTAATCTGAAATCATAATATCATAAACATTCTAAATTTGACAGTGTGGATCTTCATTTT-AGTAGTAGGAAAACAGATTTGTAATTTTTGAGCACTTTATAGATGGTGAATTGTATCACACATGGAGTCAAATCTTATTACTAAACAATTATGAATTTATCTGCTAGTGATTGGTTTCATGCTACTTGCTAGAAAAATTACTAAACATAAGATATGCTTTATATGA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16390816 279 + 178775436 AT--GTCCTTGTGTTCAGTGCAGTACTATGATTTC-----------CAATTAGTTTT-TTCCATTGGCTTAATCTGAAATCATAATATCATGAACATTCTAAATTTGACAGTGTGGATCTTCATTTT-AGTAGTAGGAAAACAGATTTGTAATTTTTGAGCACTTTATAGATGGTGAATTGTATCACACACGGAGTCAAATCTTATTACTAAACAATTATGAATTTATCAGCCAGTGATTGGTTTCATGCTACTTGCTAGAAAAATTACTAAACATAAGATATGCTTTATATGA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19874586 279 - 48547382 AT--GTCCTTGTGTTCAGTGCAGTACTATGATTTC-----------CAATTAGTTTT-TTCCATTGGCTTAATCTGAAATCATAATATCATAAACATTCTAAATTTGACAGTGTAGGTCTTCATTTT-AGTAGTAGGAAAACAGATTTGTAATTTTTGAGCACTTTATAGATGGTGAATTATATCACACACGGAGTCAAATCTTATTACTAAACAATTATGAATTTATCAGCTAGTGATTGGTTTCATGCTACTTGCTAGAAAAATTACTAAACATAAGATATGCTTTATATGA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21231138 292 - 190850796 ATGAGTCTTTGTGTTCAATGCAATACTACGGTTTCCAGTAGATTTTCAATTAGTTTTGTTCTATTGGCTTAATTTGAAATCATAATATCACAAACATTCTAAATTTCACAGTATAGGTCTTCATTTTAAATATTAAGAAAAC--ATTTATAATTTCTGAGCACTTTATTGATAGTGAATTATATCACACACTGAGTCAAATTTTATTACTAAACAAGTATGAATTTACCAGCTAGTAGTTGGTATCATGCTACTTGCTAGAAAAACTACTAAACTTAAGATATGCTTTATATGA i calJac3.chr3 C 0 C 0 e mm10.chr5 49218878 119 + 151834684 I e canFam3.chr3 3808270 275 - 91889043 I a score=777605.000000 s hg38.chr4_KI270790v1_alt 109180 232 + 220246 AAGGAGATTACACctatgaggacaggaa-aatgccgtattcatcttggcattcatgtttttatcctacaaagctgagctcaatattttaccaacag-taagaactcaacaaatattgaatggaatgGTTTCT-------CTAATAAAATTTCTCTCTCTC--------TGTCTCTCATTCACAGTTTTTT----------------------------------------------AGCTTAT----GTTGGTTCCCAAACTTTAGCTTTTAGTTTTGCATAAGCATTACCTGGGAGTT s panTro4.chr4 21495838 230 + 193495092 AAGGAGATTACACctatgaggacaggaa-aatgccttattcatcttggcattcatgtttttatcctacaaagctgagctcaatattttaccaacag-taagaactcaacaaatattgaatggaatgTTTTCT-------CTAATAAAATTTCTCTCTCTC----------TCTCTCATTCACAGTTTTTT----------------------------------------------AGCTTAT----GTTGGTTCTCAAACTTTAGCTTTTAGTTTTGCATAAGCATTACCTGAGAGTT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21673043 229 + 198332218 AAGGAGATTACACCTATAAGGACAGGAA-AATGCC-TATTCGTCTTGGCATTCATGTTTTTATCCTACAAAGCTGAGCTCAATATTTTACCAACAG-TAAGAACTCAACAAATATTGAATGGAATGGTTTCT-------CTAATAAAATTTCTCTCTCTC----------TCTCTCATTCACAGTTTTTT----------------------------------------------AGCTTAT----GTTGGTTCTCAAACTTTAGCTTTTAGTTTTGCATAAGCATTACCTGGGAGTT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20285188 238 - 85365473 AAGGAGATTACACCTTTGAAGACGGGAA-AATGCCTTATTCATCTTAGCATTAACGTTTTTATCCTACAAAGCTGAGCTCAATATTTTACCAACAG-TAAGAACTCAACAAATATTGAATGGAATGGTTTCT-------CTAATAAAATTtctctttctc------tctctctctcATTCACAGTTTTTT----------------------------------------------AGCTTATCAACGTTGGTTCTCAAACTTTAGCTTTTAGTTTTGCATAAGCATTACCTGGGAGTT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16751215 242 + 184069350 AAGGAGATTACACctttgaggacaggaa-aatgccttattcatcttggcattcATGTTTTTATTCTACAAAGCAGAGCTCAGTATTTTACCAACAG-TAAGAACTCAACAAATATTGAATGAAATGGTTTCT-------CTAATAAAATTTCTCTCTCTC----------ACTCTCATTCACAGTTTTTTTTTTTTTTTTTT----------------------------------AGCTTAT----GTTGGTTCTCAAACTTTAGCTTTTAGTTTTGCATAAGCATTACCTGGGAGTT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20800521 242 + 189454096 AAGGAGATTACACctttgaggacaggaa-aatgccttattcatcttggcattcATGTTTTTATTCTACAAAGCAGAGCTCAGTATTTTACCAACAG-TAAGAACTCAACAAATATTGAATGAAATGATTTCT-------CTAATAAAATTTCTCTCTCTC----------ACTCTCATTCACAGtttttttttttttttttt----------------------------------AGCTTAT----GTTGGTTCTCAAACTTTAGCTTTTAGTTTTGCATAAGCATTACCTGGGAGTT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16391095 253 + 178775436 AAGGAGATTACACCTTTGAGGACAGGAA-AATGCCTTATTCATCTTGGCATTCATGTTTTTATTCTACAAAGCAGAGCTCAGTATTTTACCAACAG-TaagaactcaacaaatattgaatgAAATGGTTtct-------ctaataaaatttctctctctc----------actctcattcacagtttgtttttttttttttt-----------------------ttttttttttaagcttat----gttggttctcaaactttagcttTTAGTTTTGCATAAGCATTACCTGggagtt i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19874865 276 - 48547382 AAGGAGATTACACctttgaggacaggaa-aatgccttattcatcttggcattcATGTTTTTATTCTACAAAGCAGAGCTCAGTATCTTACCAACAG-TAAGAACTCAACAAATATTGAATGAAATGGTTTCT-------CTAATAAAATTTCTCTCTCTC----------GCTCTCATTCACAGttttttttttttgtttttttttttttttttttttttttttttttttttttttagcttat----gttggttctcaaactttagcttttagttttGCATAAGCATTACCTGGGAGTT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21231430 226 - 190850796 AAGGAGATTATACctttgaggacaggaa-aatgccttattcatcttggcattcacgtttttatcctacaaagctgagctcaatattttaccaacag-taagaactcaacaaatattgaatggaatgGTTTCT-------CTAATAAAATTCCTCTCTCTC--------------TCATTCACAGTTTTTT----------------------------------------------AGCTTAT----GTTGGTTCTCAAACTTTAGCTTTTAGTTTTGCATAAGTATTACTTGGGAGTT i calJac3.chr3 C 0 C 0 s canFam3.chr3 3808545 240 - 91889043 AAGGAGAGT--ACTTttgagggcaaaaataacgtctcatgcatct-----tttctgcttttatcctacaaagcc-agctcaatattttgcaaatggttaagtactcaacaaatgttgaatggaatgGCACTTTAAATTGTTAATATAATTCATTTCTCTCTCTGCCTCTCTCTCTCATTCTTAGTTTTT-----------------------------------------------AACATAT----GATGGTTTTCAAACTTTAGTTTTTAGTTTTGCTTTAGCATCACCTGCGAGTT i canFam3.chr3 I 275 C 0 e mm10.chr5 49218878 119 + 151834684 I a score=12364.000000 s hg38.chr4_KI270790v1_alt 109412 4 + 220246 CTGC s panTro4.chr4 21496068 4 + 193495092 CTGC i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21673272 4 + 198332218 CTGC i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20285426 4 - 85365473 CTGC i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16751457 4 + 184069350 CTGC i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20800763 4 + 189454096 CTGC i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16391348 4 + 178775436 ctgc i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19875141 4 - 48547382 CTGC i chlSab2.chr27 C 0 C 0 s canFam3.chr3 3808785 4 - 91889043 CTTC i canFam3.chr3 C 0 C 0 e mm10.chr5 49218878 119 + 151834684 I e calJac3.chr3 21231656 0 - 190850796 C a score=17017.000000 s hg38.chr4_KI270790v1_alt 109416 7 + 220246 CACTTAC s panTro4.chr4 21496072 7 + 193495092 CACTTAC i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21673276 7 + 198332218 CACTTAC i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20285430 7 - 85365473 CACTTAC i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16751461 7 + 184069350 CACTTAC i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20800767 7 + 189454096 CACTTAC i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16391352 7 + 178775436 cacttac i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19875145 7 - 48547382 CAGTTAC i chlSab2.chr27 C 0 C 0 e mm10.chr5 49218878 119 + 151834684 I e calJac3.chr3 21231656 0 - 190850796 C e canFam3.chr3 3808789 0 - 91889043 C a score=10004.000000 s hg38.chr4_KI270790v1_alt 109423 4 + 220246 TACT s panTro4.chr4 21496079 4 + 193495092 TACT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21673283 4 + 198332218 TACT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20285437 4 - 85365473 TACT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16751468 4 + 184069350 TACT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20800774 4 + 189454096 TACT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16391359 4 + 178775436 tact i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19875152 4 - 48547382 TACT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21231656 4 - 190850796 TAAA i calJac3.chr3 C 0 C 0 e mm10.chr5 49218878 119 + 151834684 I e canFam3.chr3 3808789 0 - 91889043 C a score=225515.000000 s hg38.chr4_KI270790v1_alt 109427 65 + 220246 TTCTGCCATCTACTACTCTCAAAGTTCTTTTCAATTAGTTATAGAGAAGCTTAGGAAGCTACAGT s panTro4.chr4 21496083 65 + 193495092 TTCTGCCATCTACTACTCTCAAAGTTCTTTTCAATTAGTTATAGAGAAGCTTAGAAAGCTACAGT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21673287 65 + 198332218 TTCTGCCATCTACTACTCTCAAAGTTCTTTTCAATTAGTTAAAGAGAAGCTTAGGAAGCTACAGT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20285441 65 - 85365473 TTCTGCCACCTACTACGCTCAAAGTTCTTTTCAATTACTTATAGAGACGCTTAGGAAGCTACAGT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16751472 65 + 184069350 TTCTGCCACCTACTACTCTCAAAGTTCTTTTCAATTAGTTATAGAGAACCTTAGGAAGCTACAGT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20800778 65 + 189454096 TTCTGCCACCTACTACTCTCAAAGTTCTTTTCAATTAGTTATAGAGAACCTTAGGAAGCTACAGT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16391363 65 + 178775436 tTCTGCCCCCTACTACTCGCAAAGTTCTTTTCAATTAGTTATAGAGAACCTTAGGAAGCTACAGT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19875156 65 - 48547382 TTCTGCCACCTGCTACTCTCAAAGTTCTTTTCAATTAGTTATAGAGAACCTTAGGAAGCTACAGT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21231660 65 - 190850796 TTCTGCCAACTACTAACCTCACAATTCTTTTCAATTAGTTATAGAGAAACTTAGGAAGCTACAGC i calJac3.chr3 C 0 C 0 s canFam3.chr3 3808789 65 - 91889043 TTCTGCCAACTTCTACTTGCAAAATTCTTTGCCATTGGTCCTAGAGAGGCTTAAGAAGCTCTAGT i canFam3.chr3 C 0 T 65 e mm10.chr5 49218878 119 + 151834684 I a score=111300.000000 s hg38.chr4_KI270790v1_alt 109492 38 + 220246 TTTCAGACCACCAGAAATACCAGCTTAGTAGTTACCAA s panTro4.chr4 21496148 38 + 193495092 TTTCAGACCACCAGAAATACCAGCTTAGTAGTTACCAA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21673352 38 + 198332218 TTTCAGACCACCAGAAATACCAGCTTAGTAGTTACCAA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20285506 38 - 85365473 TTTCAGACCACCAGAAATACCAGCTTAGTAGTTACCAA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16751537 38 + 184069350 TTTCAGACCACCAGACATACCAGCTTAGTAGTTATCAA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20800843 38 + 189454096 TTTCAGACCACCAGACATACCAGCTTAGTAGTTATCAA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16391428 38 + 178775436 TTTCAGACCACCAGACATTCCAGCTTAGTAGTTATCAA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19875221 38 - 48547382 TTTCAGACCACCAGACATACCAGCTTAGTAGTTATCAA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21231725 37 - 190850796 TTTCAGACTACCAGAAATACCA-CCTATGAGTTACCAA i calJac3.chr3 C 0 C 0 e mm10.chr5 49218878 119 + 151834684 I e canFam3.chr3 3808854 65 - 91889043 T a score=5525.000000 s hg38.chr4_KI270790v1_alt 109530 29 + 220246 TAGTTC-TTTCTTGTTGGAGCATCTCAGAA s ponAbe2.chr4 21673390 29 + 198332218 TAGTTC-TTTCTTGTTGGAGCACCTCAGAA i ponAbe2.chr4 C 0 C 0 s calJac3.chr3 21231762 30 - 190850796 GAGTTCTTTTCTTGTTGCAGCAACTCTGAA i calJac3.chr3 C 0 T 136 e mm10.chr5 49218878 119 + 151834684 I e chlSab2.chr27 19875259 0 - 48547382 C e macFas5.chr5 20800881 0 + 189454096 C e rheMac3.chr5 16751575 0 + 184069350 C e canFam3.chr3 3808854 65 - 91889043 T e papAnu2.chr5 16391466 0 + 178775436 C e nomLeu3.chr20 20285544 0 - 85365473 C e panTro4.chr4 21496186 0 + 193495092 C a score=2765.000000 s hg38.chr4_KI270790v1_alt 109559 29 + 220246 AAGCATTACCTGGGAGTTCTGGCACTTAC s ponAbe2.chr4 21673419 29 + 198332218 AAGCATTACCTGGGAGTTCTGGCACTTAC i ponAbe2.chr4 C 0 C 0 e mm10.chr5 49218878 119 + 151834684 I e chlSab2.chr27 19875259 0 - 48547382 C e macFas5.chr5 20800881 0 + 189454096 C e rheMac3.chr5 16751575 0 + 184069350 C e calJac3.chr3 21231792 136 - 190850796 T e canFam3.chr3 3808854 65 - 91889043 T e papAnu2.chr5 16391466 0 + 178775436 C e nomLeu3.chr20 20285544 0 - 85365473 C e panTro4.chr4 21496186 0 + 193495092 C a score=263.000000 s hg38.chr4_KI270790v1_alt 109588 4 + 220246 TACT s ponAbe2.chr4 21673448 4 + 198332218 TACT i ponAbe2.chr4 C 0 C 0 s calJac3.chr3 21231656 4 - 190850796 TAAA i calJac3.chr3 T 136 C 0 e mm10.chr5 49218878 119 + 151834684 I e chlSab2.chr27 19875259 0 - 48547382 C e macFas5.chr5 20800881 0 + 189454096 C e rheMac3.chr5 16751575 0 + 184069350 C e canFam3.chr3 3808854 65 - 91889043 T e papAnu2.chr5 16391466 0 + 178775436 C e nomLeu3.chr20 20285544 0 - 85365473 C e panTro4.chr4 21496186 0 + 193495092 C a score=36905.000000 s hg38.chr4_KI270790v1_alt 109592 103 + 220246 TTCTGCCACCTACTACTCTCAAAGTTCTTTTCAATTAGTTACAGAGAAGCTTAGGAAGCTACAGTTTTCAGACCACC---AGAAATACCAGCTTAGTAGTTACCAG s ponAbe2.chr4 21673452 103 + 198332218 TTCTGCCACCTACTACTCTCAAAGTTCTTTTCAATTAGTTATAGAGAAGCTTAGGAAGCTACAGTTTTCAGACCACC---AGAAATACCAGCTTAGTAGTTACCAA i ponAbe2.chr4 C 0 C 0 s calJac3.chr3 21231660 102 - 190850796 TTCTGCCAACTACTAACCTCACAATTCTTTTCAATTAGTTATAGAGAAACTTAGGAAGCTACAGCTTTCAGACTACC---AGAAATACCA-CCTATGAGTTACCAA i calJac3.chr3 C 0 C 0 s canFam3.chr3 3808789 106 - 91889043 TTCTGCCAACTTCTACTTGCAAAATTCTTTGCCATTGGTCCTAGAGAGGCTTAAGAAGCTCTAGTCTATTGGCCACCTTGAGTGATAATGCCTTAGGAATTACCAA i canFam3.chr3 T 65 C 0 e mm10.chr5 49218878 119 + 151834684 I e chlSab2.chr27 19875259 0 - 48547382 C e macFas5.chr5 20800881 0 + 189454096 C e rheMac3.chr5 16751575 0 + 184069350 C e papAnu2.chr5 16391466 0 + 178775436 C e nomLeu3.chr20 20285544 0 - 85365473 C e panTro4.chr4 21496186 0 + 193495092 C a score=1099438.000000 s hg38.chr4_KI270790v1_alt 109695 349 + 220246 TAGTTC-TTTCTTGTTGGAGCA--GCTAAGAACAAGTCAAAGTATTTATTGAGAAAGAGTGGAATTTG-AATAATAACCTTCCTTTCTGCTCCATCCCAGTGAAAGCAGGGTGGGTGATGGT--------------------------------------GATATATATACTGTATACATGCACAAGAATCTGTGCAGAAATAACATGTATCCAGCATCCCTCACTCCAGGCAGCAATTAGCCCTTTCTTCCCTTCCCTCCCCAa------------------gaggcaatgtactacaatgaat-agcgcacaggacttca---gatcagacagaccgaagaaacttcaaattctgcctccattacttaccaacagtgaatttgggcaagtgacttgaactcccaagtcagc s panTro4.chr4 21496186 349 + 193495092 TAGTTC-TTTCTTGTTGGAGCA--GCTCAGAACAAGTCAAAGTATTTATTGAGAAAGAGTGGAATTTG-AATAATAACCTTCCTTTCTGCTCCATCCCAGTGAAAGCAGGGTGGGTGATGGT--------------------------------------GATATATATACTGTATACATGCACAAGAATCTGTGGAGAAATAACTTGTATCCTGGATCCCTCACTCCAGGCAGCAATTAGCCCTTTCTTCCCTTCCCTCCCCAa------------------gaggcaatgtactacaatgaac-agcgcacaggacttca---gatcagacagaccgaagaaacttcaaattctgcctccaatacttaccaacagtgaatttgggcaagtgacttgaactcccaagtcagc i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21673555 349 + 198332218 TAGTTC-TTTCTTGTTGGAGCA--GCTCAGAGCAAGTCAAAGTATTTATTGAGAAAGAGTGGAATTTG-AATAATAACCTTCCTTTCTGCTCCATCCCAGTGAAAGCAGGGTGGGTGATGGT--------------------------------------GATATATATACTGTATATGTGCACAAGAATCTGTGCAGAAATAACATGTATCCTGGATCCCTCACTCCAGGCAGCAATTAGCCCTTTCTTCTCTTCCCTCCCCAa------------------gaggcaatgtactacaatgaac-agcgcacaggacttca---gatcagacagaccgaagaaacttcaaattctgcctccgatacttaccaacagtgaatttgggcaagtgacttgaactcccaagtcagc i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20285544 351 - 85365473 TAGCTC-TTTCTTGTCGGAGCA--GCTCAGAACAAGTCAAAGTATTTATTGAGAAAGAGTGGAATTTG-AATAATAACCTTCCTTTCTGCTCCATCCCAGTGAAAACAGGGTGGGTGATGGT------------------------------------GAGATATATATACTGTATATATGCATAAGAAACTGTGCAGAAATAACATGTATCCTGGATCCCTCACTCCGGGCAGCAATTAGCCCTTTCTTCCCTTCCCTCCCCAC------------------gaggcaatgtactacaatgaat-agcgcacaggacttca---gatcagacagacctaagaaacttcaaattccgcctccaatacctaccaagagtgaatttgggcaagtgacttgaactcccaagtcagc i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16751575 349 + 184069350 CAGTTC-TTTCTTGTTGGAGCA--GCTCAGAACAAGTCAACGTGTTTATTGAGAAAGAGCGGAATTTG-AATAATAACCTTCCTTTCTGCTCCATCCCAGTGAAAGTAGGGTGGGTGATGGT--------------------------------------GACATATATACTGTATATATGCACAAGAATCTGTGCAGAAATAACATGTATCCTGGATCCCTCACTCCAGGCAGCAATTAGCCCTTTCTTCCCTTCCCTCCCCAa------------------gaggcaatgtactacaatgaat-agtgaacaggatttca---gatcagacagacctaagaaacttcaaattctgcctgcaatacttaccaacggtgaatttgggcaagtgacttgaactccgaagtcagc i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20800881 349 + 189454096 CAGTTC-TTTCTTGTTGGAGCA--GCTCAGAACAAGTCAACGTGTTTATTGAGAAAGAGCGGAATTTG-AATAATAACCTTCCTTTCTGCTCCATCCCAGTGAAAGTAGGGTGGGTGATGGT--------------------------------------GACATATATACTGTATATATGCACAAGAATCTGTGCAGAAATAACATGTATCCTGGATCCCTCACTCCAGGCAGCAATTAGCCCTTTCTTCCCTTCCCTCCCCAa------------------gaggcaatgtactacaatgaat-agtgaacaggatttca---gatcagacagacctaagaaacttcaaattctgcctgcaatacttaccaacggtgaatttgggcaagtgacttgaactccgaagtcagc i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16391466 349 + 178775436 CAGTTC-TTTCTTGTTGGAGCA--GCTCAGAACAAGTCAACGTGTTTATTGAGAAAGAGCGGAATTTG-AATAATAACCTTCCTTTCTGCTCCATCCCAGTGAAAGTAGGGTGGGTGATGGT--------------------------------------gacatatatactgtatatatgcaCAAGAATCTGTGCGGAAATAACATGTATCCTGGATCCCTCACTCCAGGCAGCAATTagccctttcttcccttccctccccaa------------------gAGGCAATGTACTTCAATGAAT-AGTGAACAGGATTTCA---GATCAGACAGACCTAAGAAACTTCAAATTCTGCCTGCAATACTTACCAACGGTGAATTTGGGCAAGTGACTTGAACTCCGAAGTCAGC i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19875259 349 - 48547382 CAGTTC-TTTCTTGTTGGAGCA--GCTCAGAACAAGTCAACGTATTTATTGAGAAAGAGCGGAATTTG-AATAATAATCTTCCTTTCTGCTCCATCCCAGTGAAAGTAGGGTGGGTGCTGGT--------------------------------------GATATATATACTGTATATATGCACAAGAATCTGGGCAGAAATAACATGTATCCTGGATCCCTCACTCCAGGCAGCAATTAGCCCTTTCTTCCCTTCCCTCCCCAa------------------gaggcaatgtactacaacgaat-agtgaacaggacttca---gatcagacagacctaagaaacttcaaattctgcctgcaatacttaccaacagtgaatttgggcaagtgacttgaactctgaagtcagc i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21231762 400 - 190850796 GAGTTCTTTTCTTGTTGCAGCA--ACTCTGAACAAGTCAGAGTGTTTATTGAGAAAGAGTAGAATGTG-AATAATAGCCTTCCTTTTGGCTCCATCCCAGTGAGGGTTGGGTGGATGATGGTTTtatatatatatatatatatatatatatatatatatatatatatatatactatatatgtaCAAGAATTTGTGTAG-AGTAACATGCATCCTGGATCCCTCACTCCAGGCAACAATTAG-CCTTTCTTCT----CCTCCCCAAAAGGCAATATACAACAATgaggcaatggactacaatgaat-agtgcacagaacttga---gatcactcagacctaagagacctcaaattctgcctccaatatttaccaaaagtgaatttgggcaagtgacttgaactcccaagtcagc i calJac3.chr3 C 0 I 153 s canFam3.chr3 3808895 317 - 91889043 CGGTTC-TTTCTATTTGGAGTAATGGTCAGAACCACCCGA--TATACAATGAGTCAGGGTGAAATTTGAAAAAAGAGTCTGCCTCTTTGCTCCATCCTAATGAGGGTGGAGGGTAGAGTGAT--------------------------------------TACATGCAGA-TGCATACAAGCAT-AGCATCTAGGTAGAAATAACATTT-TCCTGGACACTTCATGCCAGGCAGCAGCTATCAATGTTTTCTTTT--CTACCAGA------------------GAGGCAATGCATTGTGGTAGGTAAGCTCACAG----TCAGAGGACCAGAAAGACCCAAGGAACTTTAAat----------------------------cttgggcaattgatttaaatccccaagtcagt i canFam3.chr3 C 0 C 0 e mm10.chr5 49218878 119 + 151834684 I a score=119534.000000 s hg38.chr4_KI270790v1_alt 110044 42 + 220246 tttataatatatatataagaagagta----ataactagctcatagg s panTro4.chr4 21496535 42 + 193495092 tttataatatatatataagaagagta----aaaactagctgacagg i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21673904 42 + 198332218 tttataatatatatataagaagagta----ataactagctcatagg i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20285895 40 - 85365473 tttata--atatatataagaagagta----ataactagctcatagg i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16751924 40 + 184069350 ttcata--atatatataagaagagta----ataactagctcatagg i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20801230 40 + 189454096 ttcata--atatatataagaagggta----ataactagctcatagg i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16391815 40 + 178775436 TTCATA--ATATATATAAGAAGAGTA----ATAACTAGCTCATAGG i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19875608 40 - 48547382 ttcata--acatatataaggagagta----ataactagctcatagg i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21232315 42 - 190850796 tttattacatATAAATATAAAGAGTA----ATAACTAGCTCATAGG i calJac3.chr3 I 153 C 0 s canFam3.chr3 3809212 43 - 91889043 -tcctt--atatgtagaacaaagacagctcatagctagctcatagg i canFam3.chr3 C 0 I 334 e mm10.chr5 49218878 119 + 151834684 I a score=70134.000000 s hg38.chr4_KI270790v1_alt 110086 33 + 220246 gcttttgtgggaatAGAGAAGTTC--------ATAGAGAAT s panTro4.chr4 21496577 33 + 193495092 gcttttgtgggaatAGAGAAGTTC--------ATAGAGAAT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21673946 33 + 198332218 gcttttgtgggaatGGAGAAGTTC--------ATAGAGAAT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20285935 27 - 85365473 gcttttgtgggaatAGAGAAGTTC--------TT------T i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16751964 40 + 184069350 gtttttgtgggaatAGAGAAGTTCTTTTTTA-ATAATGCAT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20801270 40 + 189454096 gtttttgtgggaatAGAGAAGTTCTTTTTTA-ATAATGCAT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16391855 40 + 178775436 GTTTTTGTGGGAATAGAGAAGTTCTTTTTTA-ATAATGCAT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19875648 40 - 48547382 gcttttgtgggaatAGAGAAGTTCTTTTTTA-ATAATGCAT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21232357 39 - 190850796 A-TTTTGTGGGAATAGAGAAGCTCCTTTTTATATAAAGT-C i calJac3.chr3 C 0 C 0 e mm10.chr5 49218878 119 + 151834684 I e canFam3.chr3 3809255 334 - 91889043 I a score=90920.000000 s hg38.chr4_KI270790v1_alt 110119 30 + 220246 TTTCATAGCATATATTC-CAGAATTGTAACT-- s panTro4.chr4 21496610 30 + 193495092 TTTCATAGCATATATTC-CAGAATTGTAACT-- i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21673979 30 + 198332218 TTTCATAGCATATATTC-CAGAATTGTAACT-- i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20285962 31 - 85365473 TTTTATAATGCCTTTTCATAGCATTATAACT-- i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16752004 30 + 184069350 TTTCATAGCATATATTC-CAGAATTGTAACT-- i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20801310 30 + 189454096 TTTCATAGCATATATTC-CAGAATTGTAACT-- i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16391895 30 + 178775436 TTTCATAGCATATATTC-CAGAATTGTAAct-- i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19875688 30 - 48547382 TTTCATAGCATATGTTC-CAGAATTGTAACT-- i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21232396 30 - 190850796 TTTTATAGCATATATTC-CAGAATTGTAACT-- i calJac3.chr3 C 0 C 0 s canFam3.chr3 3809589 32 - 91889043 TTTCATAGCAGATGTTT-CAGAGTTTTATTATC i canFam3.chr3 I 334 C 0 e mm10.chr5 49218878 119 + 151834684 I a score=617296.000000 s hg38.chr4_KI270790v1_alt 110149 188 + 220246 ATTG-TTTTTT-CCATTTACAGACTCTAAGTTAAAGAAAGAAACTACAGTAT----------TACCAGTCACATATATTTATACACTAAGTGAAAATGTCACCACAACTCAAAAAAATAAGTGGGTGTGGA------ATAGATGACCTTCGACCTTGATTCTTAACCTAGGATGGGATAATTATATGATTCATATTGATGTATTTA s panTro4.chr4 21496640 189 + 193495092 ATTG-TTTTTTTCCATTTACAGACTCTAAGTTAAAGAAAGAAAATACAGTAT----------TACCAGTCACATATATTTATACACTAAGTGAAAATGTCACCGCGACTCAAAAAAATAAGTGGGTGTGGA------ATAGAGGACCTTCGACATTGATTCTTAACCTGGGATGGGATGATTATATGATTCATATTGATGTATTTA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21674009 189 + 198332218 ATTA-TTTTTTTCCATTTACGGACTGTAAGTTAAAGAAAGAAAATACAGTGT----------TACCAGTCACATATATTTATACACTAAGTGAAAATGTCACCGCGACTCAAAAAAATAAGTGGGTGTGGA------ATAGATGACCTTCGACATTGATTCTTAACCTGGGATGGGATGACTATATGATTCATATTGATATATTTA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20285993 189 - 85365473 ACTG-TTTTTTTCCATTTACAGACTCTAAGTTAAAGAAATAAAATACTGTAT----------TACCAGTCACACATATTTATACATTAAGTGAAAATGTCACCGTGACTCAAAaaaataagtgggtgtgga------ataggtgaccttcaacattgtttcttaacctgggatgggatgattatatgattcATATTGATGTATTTA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16752034 196 + 184069350 ATCA-TTTTTTTCCATTTACAGATTCTAAGTTAAAGAAATAAAATACTGTAATAAAATAAAATACCAGTCAC--ATATTTATACACTAAGTGAAAATGTCACTGCAACTC-AAaaaataagtgggtgtgga------atagatgacctttgacattgattcttaacctgggatgggatgattatatgattcATATTGATGTATTTA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20801340 195 + 189454096 ATCA-TTTTTTTCCATTTACAGATTCTAAGTTAAAGAAATAAAATACTGTAA-AAAATAAAATACCAGTCAC--ATATTTATACACTAAGTGAAAATGTCACTGCAACTC-AAaaaataagtgggtgtgga------atagatgacctttgacattgattcttaacctgggatgggatgattatatgattcATATTGATGTATTTA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16391925 197 + 178775436 atca-tttttttccatttacagattctaagttaaagaaataaaacactgtaataaaataaaataccagtcAC--ATATTTATACACTAAGTGAAAATGTCACTgcaactcaaaaaaataagtgGGTGTGGA------ATAGATGACCTTTGACACTGATTCTTAACCTGGGATGGGATGATTATATGATTCATATTGATGTATTTA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19875718 188 - 48547382 ATCATTTTTTTTCCATTTACAGATTCTAAGTTAAAGAAATAAAATACTATAT----------TACAAGTCAC--ATATTTATACACTAAGTGAAAATGTCACTGCAACTCAAAAAAATAAGTGGGTGTGGA------ATAGATGACCTTTGACACTGATTCTTAACCTGCGATGGGATGATTATATGATTCATATTGATGTATTTA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21232426 188 - 190850796 ATTA-TTTTTT-CCATTTGCAGACCCTAAGTTAAAGAAATAAAATACTGCAT----------TATCAGTCACATATACTTATACAGTAGGTGAAAATGTCACTGTGACTCAGAAAAATAAGTGTGTGTGGA------ACAGATGAGCTTCGACATTGATTCTTAACCTGGGATGGCATGATTATATGATTCATATTGATGCATTTA i calJac3.chr3 C 0 C 0 s mm10.chr5 49218997 171 + 151834684 ATGG-CTTTTTTCTA-TTATGAACTCTAAGTGAAAGAAAGAAGATACTGTGC----------TCCTATACCC----------CCCATATGGGACTGTGTTCCCAGGAGTC------ATAAGTCAACATAGA------GTCAATGACCATGGACATCCATTTTGATCTGGGGATAAG-TGAAGGCATAACTTACAGCTACTTATTTT i mm10.chr5 I 119 C 0 s canFam3.chr3 3809621 192 - 91889043 -TTT-TTTTTTCCCATTTATACATCCTATGTTAAAGAAACACA-TACTGTAT----------TAGGAACCACATATGCTTGTACACTAAGTGAAAATGTTACTGTGACTTCAGAAAATAAGTGTGtgggggggtcatatacatgatctttaactttg-ttcttaatctacgattcaatgattctatgattcACATGGATTTATTTA i canFam3.chr3 C 0 I 381 a score=285626.000000 s hg38.chr4_KI270790v1_alt 110337 92 + 220246 TCCATATATAATTTGACATAGGATTGT-CTAAATGTTGTCAGTTCAAAGTAGATCATCTGGCCTGACTAAAAAGTTATCATATTTCAT-ATTTT s panTro4.chr4 21496829 91 + 193495092 TCCATATATAATTTGACATAGGATTTT-CTAAATGTTGTCAGTTCAAAGTAGATCATCTGGCCTGGC-AAAAAGTTATCGTATTTCAT-ATTTT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21674198 92 + 198332218 TCCATATATAATTTGACATAGGATTTT-CTAAATGTTGTCAGTTCAAAGTAGATCATCTGGCCGGACTAAAAAGTTATCATATTTCAT-ATTTT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20286182 93 - 85365473 TCCATATATAATTTGACATAGGATTTTGCTAAATGTTGTCAGTTGAAAGTAGATCATCTGGCCTGACTAAAAAGTTATCATATTTCAT-ATTTT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16752230 93 + 184069350 TCCATATATGATTTGACATAGGATTTTGCTAAATGTTGTCAGTTGAAAGTAGATCATCTGGCCTGACTAAAAAGTTATCATATTTCAT-ATTTT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20801535 93 + 189454096 TCCATATATGATTTGACATAGGATTTTGCTAAATGTTGTCAGTTGAAAGTAGATCATCTGGCCTGACTAAAAAGTTATCATATTTCAT-ATTTT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16392122 93 + 178775436 TCCATATATGATTTGACATAGGATTTTGCTAAATGTTGTCAGTTGAAAGTAGATCATCTGGCCTGACTAAAAAGttatcatatttcat-atttt i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19875906 93 - 48547382 TCCATATATGATTTGACATAGGATTTTGCTAAATGTTGTCAGTTGAAAGTAGATCATCTGGCCTGACTAAAAAGTTATCATATTTCAT-ATTTT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21232614 93 - 190850796 TCCACCTATAATTTGACATCAGATTTTGCTAAATGTTGTCAGTTGAAAGTGGATCATCTAGCCTGAATAAAAAAATATCGTATTTCAT-ATTTT i calJac3.chr3 C 0 C 0 s mm10.chr5 49219168 89 + 151834684 ATTATCCATAATTTGCTTAAGGATTTAATGAA----TGTCAATTGAAA-CAAATCCTCTAAAATAACCAAGTATGTGATAAATTTCATCATTTT i mm10.chr5 C 0 C 0 e canFam3.chr3 3809813 381 - 91889043 I a score=4199693.000000 s hg38.chr4_KI270790v1_alt 110429 1268 + 220246 AGTAGATATAAAATTTGACTCT-AAAATGTCAGT----------------------GCCAAAATC-TTAGAAATAATATTC------ATGTTTTTACTGGAGTCTCAG----ATAATAATAAATAGCTCTGTC---------AAATAAAAAAGGTAAAATAT-AAAATCTGAAAATGGGCAATATGTTTCAACAAGTGAAGAGAAACAATAAAGTCAAAGACTCTTTGACGCCGTAAATTGAATGCCAACTTTCTATTTCACTTAGCTTCTCCCCCACTT----ATT--ATGCTCTTACAGGTTTTGAAAGACTCTTAACAGGTAAATGCCCTCATAAATT---------CTTGAATATACTGAGATTAG--------AGTTCCCCTTCTGCTAGCTCCAAAGTTACCTAATTTTGTGACAAAGTAGCTGACAGAATGTGGCAATTAAGCTATGTTCATATTAG---------------------------------------------------------ACATGGCTGCATCTA-----TTTTTTT-TAACCAAAATGATCTGAGGTTCCAAATTATGAAGCACAGCAAACCAACAGTGCTTTTCAGGGACAAACTGAATATTTAAATAATTTTTAAATAAATGATCATGA-CTTTGTTGGTCCTCCTTTGCTGAGCACTAAAatgatgatgatgatg------atgat----AAAATAATAATATACATTAAACA-------------ATC--------CCTGCA------------GTACtacttaactattttttacctctatttttgaatctataaaata-cagataacaattgtatttacctccat-agggtatgctgaatgttaaatatgttaataaatCTGCTGATCTCAGCACATGGTAGGTTATATGAGAATGTCtataattactatttatattactatttataattatCCCATTTGTAAAATTGAGGGCAgtgggtatg-----ttgttatcctaattggggagtagaggaagctgaagcttggtaaggtctgta--attctctcaagtccacatggg-gga--catcagtggaagtcgaatttaaatcccacttctctcattacaaatactctttccCTAACTCAGAGCCTTCTCA--CAGAAAACTGCAGAAAGCTGGTGAGCTAC-CCCATGTGCAGAATGCTCTATCAGTGACTTTGTCAGAGTAGCAGGGCCTGAACAAAAGCCAGGTCTGCCCTT-----CT-TTTAAGTCACTC-----TATATAAGAGAGAAGTACTTTTGACATGCCTTTCAGTTAAGTGTACTTAAAGCAAAGCTCTCAAGCTTTCCAATGACTAAATGCTAGAGGAAATAATGGG-------AATAGTCAATACCTGTAACTGAAAAATTGCTGACTGTGTGACACAGCAAATCATTACACTGTTCAAAT---ACCAATTTATAAAGCTGGAGTG s panTro4.chr4 21496920 1268 + 193495092 AGTAGATATAAAATGTGACTCTTAAAATGTCAGT----------------------GCCAAAATC-TTAGAAATAATATTC------ATGTTTTTACTGGAGTCTCAG----ATAATAATAAATAGCTTTTTC---------AAATAAAAAAGGTAAAATAT-AAAATCTGAAAATGGGCAATATGTTTCAACAAGTGAAGAGAAACAATAAAGTCGAAGACTCTTCGACGCTGTAAATTGAGTGCCAACTTTCTATTTCACTTAGCTTCTCCCCCACTT----ATT--ATGCTCTTACAGGTTTTGAAAGACTCTTAACAGGTCAATGCCCTCATAAATT---------CTTGAATATACTGAGATTAG--------AATTCCCCTTCTGCTAGCTCCAAAGTTACCTAACTTTGTGACAAAGTAACTGACAGAATGTGGCAATTAAGCTATGTTCATATTAG---------------------------------------------------------ACATGGCTGCATCTA-----TTTTTTT--AACCAAAATGATCTGAGGTTCCAAATTATGAAGCACAGCAAATCAACAGTGGTTTTCAGGGACAAACTGaatatttaaataatttttaaataaatGATCATGA-CTTTGTTGGTTCTCCTTTGCTGAGCACTAAAatgatgatgatgatg------atgat----AAAATAATAATATACATTAAACA-------------ATC--------CCTGCA------------GTACcacttaactattctttacctctatttttgaatctataaaata-cagataacaattgtgtttacctccat-agggtatgctgaatgttaaatatgttaataaatctgctgatctcagcacgtgGTAGGTTATATGAGAATGTCTATAattactatttatattactatttataATTATCCCctttgtaaaattgagggcagtgggtatg-----ttgttatcctaattggggagtagaggaagctgaagcttggtaaggtctgta--attctttcaagtccacatggg-gga--catcagtggaagtcgaatttaaatcccagttctctgattacaaatattctttccCTAACTCAGAGCCTTCTCA--TAGAAAACTGCAGAAAGCTGGTGAGCTAC-CCCATGTGCAGAATGCTCTATCAGTGACTTTGTCAGAGTATCAGGGCCTGAACAAAAGCCAGGTCTGCCCTT-----CT-TTTAAGTCACTC-----TATATAAGAGAGAAGTACTTTTGACATGCCTTTCAGTTAAGTGTACTCAAAGCAAAGCTCTCAAGCTTTCCAATGACTAAATGCTAGAGGAAATAATGGG-------AATAGTCAATACCTGTAACTGAAAAATTGCTGACGGTGTGACACAGCAAATCATTACACTGTTCAAAT---ACCAATTTATAAAGCTGGAGTG i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21674290 1265 + 198332218 AGTAGATATAAAATTTGACTCTTAAAATGTCAGT----------------------GCCAAAATC-TTAGAAATAATATTC------ATGTTTTTACTGGAGTCTCAG----ATAACAATAAATAGATTTGTC---------AAATAAAAAAGGTAAAATAT-AAAATCTGAAAATGGACAATATGTTTCAACAAGTGAAGAGAAACAATAAAGTCGAAGACTCTTGGAGGCTGTAAATTGAATGCCAACTT----TTTCACTTAGCTTCTCCCTCACTT----ATT--ATGCTCTTACAGGTTTTGAAAGACT-GTAACAGGTCAATGCTCTCATAAATT---------CTTGAATATACTGAGATTAG--------AGTTCCCCTTCTGCTAGCTCCAAAGTTACCTAACTTTATGACAAAGTAACTGACAGAATGTGGCAATTAAGCTATGTTCATATTAG---------------------------------------------------------ACATGGCTGCACCTA-----TTTTTTT--AACCAAAATGATCTCAGGTTCCAAATTATGAAGCACAGCAAACCAACAGTGGTTTTCAGGGACAAACTGaatatttaaataatttttaaataaatGATCATGA-CTTTGTTGGTTCTCCTTTGCTGAGCACTAAAatgatgatgatgatg------atgat----AAAATAATAATACACATTACACA-------------ATC--------CCTGCA------------GTACtacttaactattctttacttctatttttgaatctataaaata-cagataacaatagtatttacctccat-agggtatgctgaatgttaaatatgttaataaatCTGCTGATCTCAGCACATGGTAGGTTACATGAGAATGTCTATAattactatttatattactatttataATTATCCCATTTGTAAAATTGAGGGCAgtgggtatg-----ttgttatcccaattggggagtagaggaagctgaagcttggtaaggtccgtaatattctctcaagtccacctggg-gga--catcagtggaagtcgaatttaaatcccagttctctgattacaaatactctttccctaactcagagccttctcA--CAGAAAACTGCAGAAAGCTGGTGAACTAC-CCCATGTGCAGAATGCTCTATCAGTGACTTTGTCAGAGTAGCAGGGCCTGAACAAAAGCCAGGTCTGCCCTT-----CT-TTTAAGTCACTC-----TATATAAGAGAGAAGTATTTTTGACATGCCTTTCAGTTAAGTGTACTTAAAGCAAAGCTCTCAAGCTTTCCAATAACTAAGTGCTAGAGGAAATAATGGG-------AATAGTCAACACCTGTAACTGAAAAATTGCTGACTGTGTGACACAGCAAATCATTACACTGTTCAAAT---ACCAATTTATAAAGCTAGAGTG i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20286275 1267 - 85365473 AGTAGGTATAAAATTTGACTCTTAAAATGTTAGT----------------------GCCAAAATC-TTAGAAATAATATTC------ATGTTTTTACTGGCGTCTCAG----ACAATAATAAATAGCTTTGTC---------AAATAAAAAAGGTAAAGTAT-AAAATCTGAAAATAGGCAATATGTTTCAACAAGTGAAGAGAAACAATAAAGTCGAAGACTCTTCGACACTGTAAATTGAATGCCAACTTTGTTTTTCACTTAGCTTCTCCCCCACTT----ATT--ATGCTCTTACAGGTTTTGAAAGACT-CTAACAGGTCAATGCCCTCATAAATT---------CTTGAATATACTGAGATTAG--------AGTTCCCCTTCTGCTAGCTCCAAAGTTACTTAACTTTGTGACAAAGTAACTGACAGAATGTGGCAATTAAGCTATGTTCATATTAG---------------------------------------------------------ACATGGCTGCATCTA-----TTTTTTTTTAACCAAAATGATCTGAGTTTCCAAATTATGAAGCACAGCAAACCAACAGTGGTTTTAAGGGACAAACTGAATATTTAAATAATTTTTAAATAAATGATCATGA-CTTTGTCGGTTCTCCTTTGCTGAGCACTAAAatgatgatgatgatg------atgat----AAAATAATAATATACATTAAACA-------------ATC--------CCTGCA------------GTACtacttaactattctttacctctatttttcaatctataaaata-cagataacaactgtatttacctccat-a-ggtatgttgaatgttaaatatgttaataaatCTGCTGATCTCAGCACATGGTAGGTTATATGAGAATGTCTATAattactatttatattactatttataATTATCCCATTTCTAAAATTGAGGGCAGTGGGTATG-----TTGTTATCCTAATTGGGGAGTGGAGGAAGCTGAAGCTTGGTGAGGTTCGTA--ATTCTCTCAAGTCCACGTGGG-GGA--CATCAATGGAAGTCTAATTTAAATCCCAGTTCTCTGATTACAAATACTCTTTCCCTAACTCAGAGCCTTCTCA--CAGAAAACTGC-GAAAGCTGGTGAGCTAC-CCCATGTGCAGAATGCTCTATCAGTGACTTTGTCAGAGTAGTAAGGCCTGAACAAAAGCCAGGTCTTCCCTT-----CT-TTTAAGTCACTC-----TATATAAGAGAAAAGTACTTTTGACGTGCCTTTCAGTTAAGTGTACTTAAAGCAAAGCTCTCAAGCTTTCCAATGACTAAATGCTAGAGGAAATAATGGG-------AATAGTCAATACTTGTAACTGAAAAATTGCTGACTGTGTGACACAGCAAATCATTACACTGTTCAAAT---ACCAATTTATAAAGCTGGAGTG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16752323 1227 + 184069350 AGTGGATATAAAATTTGACTCTTAAAATGTCAGT----------------------GCCAAAATCTTTAGAAATAATATTC------ATCTTTTTACTGGAGTCTCAG----ACAATAATAAATAGCTTTGTC---------AAATAAAAAAGGTAAAGTAT-AAAATCTGAAAACAGGCAATATGTTTCAACAAGTGAAGAGAAACGATAAAGTCGAA-------------------------------------TTTCACTTAGCTTCTACCCCAC-------TT--ATGCTCTTACAGGTTTTGAATGACT-CTAACAGGTCAATGCCCTCATAAATT---------CTTGAATATACTGAGATTAG--------AGTT-CTCTTCTGCTAGCTCCGAAGTTACCTAACTTTGTGACAAAGTAACTGACAGAATGTGGCAATTAAGCTATGTTCATATTAG---------------------------------------------------------ACATGGCTCCATGTA---TTTTTTTTTTTAACCAAAATGATCTGAGGTTCCAAATTATGAAGCACAGCAAACCAACAGTGATTTTCAGGGATAAACTGAATATTTAAATCATTTTTAAATAAATGATCATGA-CTTTGTTGGTTCTCCTTTGCTGAGCACTAAAATGAAGATGATGATG------AT--------AAAAAATAATATACATTAAACA-------------ATC--------CCTgca------------atactacttaactattatttacctctatctttgaatctctaaaata-cagataacaattgtatttacctccat-agggtgtgctgaatgttaaacatgttaataaatctgctgatcttagcacaTGGTAGGTTATATGAGAATGTCTATAATTCCTATTTATATTACTATTTATAATTATCCCATTTGTAAAATTGAGGGCAgtgggtatg-----ttgttatcctgattggggagtagaggaagctgaagcttggtgaggttcgta--attctgtcaagtccatgtcgg-gga--catcagtggaagtcgaatttaaatcccagttctctgattacaaatactctttccCTAACTCAGAGCCTTCTCA--CAGAAAACTGCAGAAAGCTGGTGAGCTAC-CCCAGGTGCAGAATGCTCTATCAGTGACTTTGTCAGagtagtagggcctggacaaaagccaggtctgtcctt-----at-tttaagtcACTC-----TATATAAGAGAGAAGTAATTTTGACATGCCTTTCAGTTAAGTGTACTTAAAGCAAAGCTCTCAAGCTTTCCAATGACTAAATGCTAGAGGAAATAATGGG-------AATAGTCAATACCTGTAACTGAAAAATTGCTGACTGTGTGACACAGCAAATCATTACACTGTTCAAAT---ACCAATTTATAAAGCTGGAGTG i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20801628 1229 + 189454096 AGTGGATATAAAATTTGACTCTTAAAATGTCAGT----------------------GCCAAAATCTTTAGAAATAATATTC------ATCTTTTTACTGGAGTCTCAG----ACAATAATAAATAGCTTTGTC---------AAATAAAAAAGGTAAAGTAT-AAAATCTGAAAACAGGCAATATGTTTCAACAAGTGAAGAGAAACGATAAAGTCGAA-------------------------------------TTTCACTTAGCTTCTACCTCAC-------TT--ATGCTCTTACAGGTTTTGAATGACT-CTAACAGGTCAATGCCCTCATAAATT---------CTTGAATATACTGAGATTAG--------AGTT-CTCTTCTGCTAGCTCCGAAGTTACCTAACTTTGTGACAAAGTAACTGACAGAATGTGTCAATTAAGCTATATTCATATTAG---------------------------------------------------------ACATGGCTCCATGTATT-TTTTTTTTTTTAACCAAAATGATCTGAGGTTCCAAATTATGAAGCACAGCAAACCAACAGTGATTTTCAGGGATAAACTGAATATTTAAATCATTTTTAAATAAATGATCATGA-CTTTGTTGGTTCTCCTTTGCTGAGCACTAAAATGAAGATGATGATG------AT--------AAAAAATAATATACATTAAACA-------------ATC--------CCTgca------------atactacttaactattatttacctctatctttgaatctctaaaata-cagataacaattgtatttacctccat-agggtgtgctgaatgttaaacatgttaataaatctgctgatcttagcacaTGGTAGGTTATATGAGAATGTCtataattcctatttatattactatttataattatCCCATTTGTAAAATTGAGGGCAgtgggtatg-----ttgttatcctgattggggagtagaggaagctgaagcttggtgaggttcgta--attctgtcaagtccatgtcgg-gga--catcagtggaagtcgaatttaaatcccagttctctgattacaaatactctttccCTAACTCAGAGCCTTCTCA--CAGAAAACTGCAGAAAGCTGGTGAGCTAC-CCCAGGTGCAGAATGCTCTATCAGTGACTTTGTCAGAGTAGTAGGGCCTGGACAAAAGCCAGGTCTGTCCTT-----AT-TTTAAGTCACTC-----TATATAAGAGAGAAGTAATTTTGACATGCCTTTCAGTTAAGTGTACTTAAAGCAAAGCTGTCAAGCTTTCCAATGACTAAATGCTAGAGGAAATAATGGG-------AATAGTCAATACCTGTAACTGAAAAATTGCTGACTGTGTGACACAGCAAATCATTACACTGTTCAAAT---ACCAATTTATAAAGCTGGAGTG i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16392215 1229 + 178775436 agtgGATATAAAATTTGACTCTTAAAATGTCAGT----------------------GCCGAAATCTTTAGAAATAATATTC------ATCTTTTTACTGGAGTCTCAG----ACAATAATAAATAGCTTTGTC---------aaataaaaaaggtaaagtaT-AAAATCTGAAAACAGGCAATATGTTTCAACAAGTGAAGAGAAACGATAAAGTCGAA-------------------------------------TTTCACTTAGCTTCTACCCCAC-------TT--ATGCTCTTACAGGTTTTGAATGACT-CTAACAGGTCAATGCCCTCATAAATC---------CTTGAATATACTGAGATTAG--------AGTT-CTCTTCTGCTAGCTCCAAAGTTACCTAACTTTGTGACAAAGTAACTGACAGAATGTGGCAATTAAGCTATGTTCATATTAG---------------------------------------------------------ACATGgctccatgtatt-ttttttttttgaaccaaaGTGATCTGAGGTTCCAAATTATGAAGCACAGCAAACCAACAGTGGTTTTCAGGGACAAACtgaatatttaaatcatttttaaataaatgatcatGA-CTTTGTTGGTTCTCCTTTGCTGAGCActaaaatgaagatgatgatg------at--------aaaaaataacatacattAAACA-------------ATC--------CCTGCA------------ATACTACTTAACTACTATTTACCTCTATCTTTGAATCTCTAAAATA-CAGATAACAATTGTATTTACCTCCAC-AGGGTGTGCTGAAtgttaaatatgttaataaatcTGCTGATCTTAGCACATGGTAGGTTATATGAGAATGTCTATAattactatttatattactatttataATGATCCCATTTGTAAAATTGAGGGCAGTGGGTATG-----TTGTTATCCTGATTGGGGAGTAGAGGAAGCTGAAGCTTGGTGAGGTTCGTA--ATTCTGTCAAGTCCATGTCGG-GGA--CATCAGTGGAAGTCGAATTTAAATCCCAGTTCTCTGATTACAAATACTCTTTCCCTAACTCAGAGCCTTCTCA--CAGAAAACTGCGGAAAGCTGGTGAGCTAC-CCCAGGTGCAGAATGCTCTATCAGGGACTTTGTCAGAGTAGTAGGGCCTGGACAAAAGCCAGGTCTGTCCTT-----AT-TTTAAGTCACTC-----TATATAAGAGAGAAGTAATTTTGACATGCCTTTCAGTTAAGTGTACTTAAAGCAAAGCTCTCAAGCTTTCCAATGACTAAATGCTAGAGGAAATAATGGG-------AATAGTCAATACCTGTAACTGAAAAATTGCTGACTGTGTGACACAGCAAATCATTACACTGTTCAAAT---ACCAATTTATAAAGCTAGAGTG i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19875999 1226 - 48547382 AGTGGATATAAAATTTGACTCTTAAAATGTCAGT----------------------GCCAAAATCTTTAGAAATAATATTC------ATCTTTTTACTGGAGTCTCAG----ACAATAATAAATAGCTTTGTC---------AAATAAAAAAGGTAAAGTAT-AAAATCTGAAAACAGGCAGCATGTTTCAACAAGTGAAGAGAGAGAATAAAGTCTAA-------------------------------------TTTTACTTAGCTTCTAACCCAC-------TT--ATGCTCTTACAGGTTTTGAATGACT-CTAACAGGTCAATGCCCTCATAAATT---------CTTGAATATACTGAGATTAG--------AGTT-CTCTTCTGCTAGCTCCGAAGTTACTTAACTTTGTGACAAAGTAACTGACAGAATGTGGCAATTAAGCTATGTTCATATTAG---------------------------------------------------------ACATGGCTCCATGAA----TTTTTTTTTTAACCAAAATGATCTGAGGTTCCAAATTATGAAGCACAGCAAACCAACAGTGGTTTTCAGGGACAAACTGCATATTTAAATCATTTTTAAATAAATGATCATGA-CTTTGTTGGTTCTCCTTTGCTGAGCACTAAAATGAAGATGATGATG------AT--------AAAAAATAATATACATTAAACA-------------ATC--------CCTgca------------atactacttaactattatttacctctatctttgaatctctaaaata-cagataacaattgtatttacctccat-agggtgtgctgaatgttaaatatgttaataaatctgctgatcttagcacaTGGTAGGTTATATGAGAATGTCTATAATTCCTATTTATATTACTATTTATAGTTATCCCATTTGTAAAATTGAGGGCAgtgggtatg-----ttgttatcctgattggggagtagaggaagctgaagcttggtgaggttcgta--attctgtcaagtccatgtcaa-gga--catcagtggaagtcgaatttaaatcccagttctctgattacaaatactctttccCTAACTCAGAGCCTTCTCA--CAGAAAACTGCGGAAAGCTGGTGAGCTAC-CCCAGGTGCAGAATGCTCTATCAGTGACTTTGTCAGAGTAGTAGGGCCTGGACAAAAGCCAGGTCTGTCCTT-----AT-TTTAAGTCACTC-----TATATAAGAGAGAAGTAATTTTGACATGCCTTTCAGTTAAGTGTACTTAAAGCAAAGCTCTCAAGCTTTCCAATGACTAAATGCTAGAGGAAATAATGGG-------AATAGTCAATACCTGTAACTGAAAAATTGCTGACTGTGTGACACAGCAAATCATTACACTGTTCAAAT---ACCAATTGATAAAGCTGGAGTG i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21232707 1263 - 190850796 AGTAGATATGAAATTTGACTCTTAAAATGTCAGT----------------------TTGAAAATCTTTAGAAATAATATTC------ATCTTTTTACTGGAGTCTCAG----ACAATAATAAATAACTTTGTG---------AAATAAAAAAGGTAAAGTGC-GAAATCTATAAACGGACAATATATTTCAGCAAGTGAAGAGAAACAATAAAGCACAAGACTCTTTAACACTGTAAATTGAATGCCAACTTTCTTTTTCACTTAGCTGCTCTCCCACGT----ATT--ATGCTCTTATAGGTTTCAAATGACT-CTAACATGTCAATGCCTTCATAAATT---------CTTGAATATACTGAAGTCGG--------AGATCCCCCTCCCCAAGCTCCAAAGTTAC-TAACTTTGTGACAAAGTAACTGACAGAATGTGGCAATTAAGCTATGTTCATATTAG---------------------------------------------------------ACATGGCTCCatttattatttttttttttaaCCAAAATGATTTGAGATTCCAAATTACAAAGCACAGCAAAGCAACAGTGGTTTTCAGGGACAAACTGaatatttaaataatttttaaataaatGATCATGA-CTTTGTTGGTTTTCCTTTGTGGAGCACTAAAatgatgatgatgatg------atgat----AAAGTAACAATATACATTAAACA-------------ATC--------CCTGCAAACCATTAAATGATGCTCcttaactattctttacctctacttttgaatctatataata-cagataacaattgtactcacctccat-agggtgcgctgaatgttaaatatgttaataaatCTGCTGATCTCAGCACGTAACAGGTTATATGAAGATGTCTGTAATTACTATC-------------------ATCCCACTTGTAAAACTGAaggcagtgtgtatg-----ctgttatcctaactgaggagtagaggaagctgaagctcagcaaggctaata--attctctcgagtccacgtggg-gga--catcagtggaagtctaaattaaatcccagttctctgattacaagaactctttccctaactc--agccttctca--cagGAAACTGCAGAAAGCTGGTGAGCCAT-CCCACCTGCAGCATGCTCTATCAGTACTTTTGTCAGAGTAA-GGGGCCTCAACAAAAGCCAGTTCTGCCCTT-----C--TTTAAATCGCTT-----TATTTCAGAGAGAAGTAATTTTAACATGCTTTTCAGTTAAGTGTACTTGAAGTAAAACTCCCAAGCTTTCCAATGACTAAATGCTACAGGAAATAATGAA-------AATGGTCAATACCGGTAACTGAAAAATTGCTGACTGTGTGACATAGCAAATTGTTATACTGTTCAAAT---ATCCATTTATAAAGCTGGAGTG i calJac3.chr3 C 0 C 0 s mm10.chr5 49219257 1178 + 151834684 AGTAAGTAGAGAATTTGACTCTTTAAGTGCCAGT----------------------GCAAAAATCCTTTGAAATAAACTTT------ATTTTTTCACTGGAGTCGTAGAAAAAAAATGACGATTAGCTTTTTT---TTTTTAACACATAAAATGGAAAATATAAAAACCTGGAAACAGGCTATGTGCATCAACAGTGGAGGAGATGCAGCAGACCCTGA----------CATTGTAGACTGCATGTCACC------CCTCACAT------TCTCCCACTT----CCTGGATGCTCATCCAGCCTTC-AGTGACT---AGCATGTCAATGGCTTCATAAAACTAGGAGGCACTGAAATTGACTAAAACTAG--------ACTTTTCCTTCTGCTAGCTCTAAAGTTGCCTAGCTCTGTGACAAAGTAACTGACAGAATTTGGCAATTAAGTTATACTCACA-TAG---------------------------------------------------------ACAGGGATTGCTTTC-----TTTTTTT--AACTAAAATGATTTCAGGTTCCAGATTATTAAG--CTGCAAACTGACAAGTTTTCTCGGGAACAAACTGA-----------ATTTTTAAATAGATTATTGTGGTTTTTGTTGGTTCATATGT---GAAAACTAAAATAATGAAGATGATGAAGTCAATGAT---AAAAAGAAGAATTTAAAATCGATAATAATAATAACATATC--------CTTGCA------------AT-CTAATTAATTGTTCTGCACTTGCACGTCTTCATCTGTAAAATACCGGGTTAGGGTGAACCCCACTCTCATGAAGCTATGTTGAAGGCTAAACATCTTGAGAACACTG------------------------------------TCTAATTATAACT----------------ATTAGCCCATAATTAAA--TACAGGCAGTGTACATGAGGATCTCTCATCTCAATTGGGGAACAAAGG-AGTTGAAACCTGGTGAGGTAAATA--AGT-TCTCTGTGCTGTGTTGG-TGAGGCATC--------CTGAACTT---------TTATTAGGTTGCTGATA--------------CAGAGCTCTCAAATGTGGAATAAAGCAAATCTCTCTGAGGCCACTTCCATCCCTAGCAATCATTCCCAGAGACCTTGTCAGAAACACATGCCCAGAACGAAAACCAGG-CTGCCCTTTCTAGCC-TTTA------TG-----TATGTAAGGGGAAATTAATTTTGACATGCCTTTCAGCTAAGTGTATTTAAA-CAATCCTGTTAGGGTTTCCAAT------ATG---------ATGATCAA-------GGCAACCAACACCTGAAACTAAAATATGGTCATCTCTCTGACACAGCAGATCATTACAATATTCAAAGTGAACTGTTTTATAATGCAGGTTTT i mm10.chr5 C 0 C 0 s canFam3.chr3 3810194 1322 - 91889043 AGTTGCTACAGGATTTTGCT-TAATATTGTCAGTCGAACATAAATCACTCAGTGTGCCCAATATT-CTGGAAATAATATTCTTTTTTTTTTTTTTGCTGGAATCTTAG----AAAATAATGAATAACTTTTTCCCTTTTTTTATACATAAAACGGGAAGTAT-GAAATCTGAAAATGAGTATTATGTATCAACAATTGAGTAGAAATACTGAAGTAGAAGAACTTTTGACACTGTAAATTGAATGTCAACTTTCTTATTCACCTCGTACTCTTCCCACCTTCCCACT---TAATACTACAGGCTTTGATTGACT-CCAACATGCTAATAGCTTCATAAAAA---------CTTGAATATAATGAAATTGACTGAGACTAGTT-TTCCTCT-CTTGTTCAAAAGGTACCAAACTTTGTGATAAAGTAACTGAAAAAATGTGGCATTTAAGCCATGCTCACATTAGATAGTCCCCatatatatatatatatatatatatatatatatatatacacacacatatatatagccccccata-----tatatatatatatTAAATGATTTGAGATTCCAAATTATTAAG--CAGCCAACCAATAGT-TTTTGTAAGAACCAACTAA-----------ATTTTTAAATCAAAAATCATGG--TTTGTTGGCTCTATTTTCCAAAGCACTAAAATAATGATGACGGCG------ATGATGATAAAAGCAACAATACACACCAAACG-------------ATCTctatgtacctaca------------acaatattgaactgctctgtacctccatttccacatctatagaatt-cagataaca---ggacccacctccat-agtgtatactgaacatgaa----gtcaatacatcttccaagcttggcacacagtaggGGATGTCAAAGCATCTACTGTTACTATC-------------------ATCCCATCAGTGAAATCTGGGgtgatggatgtg-----ttgttatcccagttggagggctgcaaaagctaaagcttgggaaagttaata--actct-tgaagt---ggtgggaaga--catc--tggaacctgaatttaaaccccagtcttctgaccccaggtgctctcgccCTAATT---------------GGGGGCAATGCAGGAAGTCGGTGAGCC-C-CCCACCCACAGCATGAACTATCAGGGGCCTTAACAGGGGAGC---TCCGACACAATGGTTTGACCCTCCCCT-----CTCCTTAAGCCAGTTTTAAGTATAAGAGAGAGAAGTA--------ATGCCTTTTGGTTAAATGTACTTAAAGCAAAACCCTCCAGCATTCAAATGACTAAACGAGAGAGGGAATAATGGGCACGATCCACAGTCAATACCTA-GACTGAGAAATTGCTGTCTGTGTGAC--AGCAAACCATTACAATATCCAAAT---ACCAATTTATAAAGCCAGAGCA i canFam3.chr3 I 381 I 197 a score=862240.000000 s hg38.chr4_KI270790v1_alt 111697 229 + 220246 ATCATAGCTGTCTGGGCCAATTC-ATCTTAGTC-TCTCTT-GGTTTGGAATGAATATTTGGTTGGTTTAGAC-AGCAAA-AGCCTTTGACCCACAAATGAGAGGCtaggcttg----ccagatctagta-------------aacaaaactacaagcttcctagttgaattttaatttcagataaacagccaatacttcttta---------gt------atgttacaaatgttgcat--------gaggcatatttatactaaaatattgctt s panTro4.chr4 21498188 228 + 193495092 ATCATAGATGTCTGGGCCAATTC-ATCTTAGTC-TCTCTT-GGTTTGGAATGAATATTTGGTTGGTTTAGAC-AGCAAA-AGCCTTTGACC-ACAAATGAGAGGCtaggcttg----ccagatctagta-------------aacaaaactacaagcttcctagttgaattttaatttcagataaacagccaatacttcttta---------gt------atgttacaaatgttgcat--------gaggcatatttatactaaaatattgctt i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21675555 229 + 198332218 ATCATAGCTGTCTGGGCCAATTC-ATCTCAGTC-TCTCTT-GGTTTGGAATGAATATTTGGTTGGTTTAGAC-AGCAAA-AGCCTTTGACCCACAAATGAGAGGCtaggcttg----ccagatctagta-------------aacaaaactacaagcttcctagttgaattttaatttcagataaacagccaatacttcttta---------gt------acgttacaaatattgcat--------gaggcatatttatactaaaatattactt i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20287542 229 - 85365473 ATCATAGCTGTCTGGGCCAATTC-ATCTTAGTC-TCTCTT-GGTTTGGAATGAATATTTGGTTGGTTTAGAC-ACCAAA-AGCCTTTGACCCACAAATGAGAGGCtaggcttg----ccagatctagta-------------aacaaaactacaagcttcctagttgagttttaatttcagataaacagccaatacttcttta---------gt------atgctacaaatgttgcat--------gaggcatatttataccaaaacattactt i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16753550 229 + 184069350 TTCATAGCTGTCTGGGCCAATTC-ATCTTAGTC-TCTCTG-GGTTTGGAATGAATATTTGGTTGGTTTAGAC-AGCAAA-AGCCTTTGACCCACAAATGAGAGGCtaggcttg----ccagatctagta-------------aacaaaaatataagcttcctagttgaattttaatttcagataaacagccaatacttcttta---------gt------atgttacaaatgttgcat--------gaggcatatttataataaaacattactt i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20802857 229 + 189454096 TTCATAGCTGTCTGGGCCAATTC-ATCTTAGTC-TCTCTG-GGTTTGGAATGAATATTTGGTTGGTTTAGAC-AGCAAA-AGCCTTTGACCCACAAATGAGAGGCtaggcttg----ccagatctagta-------------aacaaaaatacaagcttcctagttgaattttaatttcagataaacagccaatacttcttta---------gt------atgttacaaatgttgcat--------gaggcatatttataataaaacattactt i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16393444 229 + 178775436 TTCATAGCTGTCTGGGCCAATTC-ATCTTAGTC-TCTCTT-GGTTTGGAATGAATATTTGGTTGGTTTAGAC-AGCAAA-AGCCTTTGACCCACAAATGAGAGGCTAGGCTTG----CCAGATCtagta-------------aacaaaaatacaagcttCCTAgttgaattttaatttcagataaacagccAATACTTCTTTA---------GT------ATGTTACAAATGTTGCAT--------GAggcatatttataataaaacattactt i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19877225 229 - 48547382 TTCATAGCTGTCTGGGCCAATTC-ATCTTAGTC-TCTCTT-GGTTTGGAATGAATATTTGGTTGGTTTAGAC-AGCAAA-AGCCTTTGACCCACAAATGAGAGGCtaggcttg----ccagatcgagta-------------aacaaaaatacaagcttcctagttgaattttaatttcagataaacagacaatacttcttta---------gt------atggtacaaatgttgcat--------gaggcatatttataataaaacattactt i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21233970 228 - 190850796 ATCATAGCTGTCTGGGCCAATTC-ATCTTAGCT-TCTCTT-GGTTTGGAATGAATATTTGGTTGGTTCAGAT-AGCAAA-AGCCTTTGACCCACAAATGAGAGGCtaggcttg----ccagatctagta-------------aacaaaaatacatgcttcctagctgaattttaatttcagataaaca-ccaatacttcttta---------gt------atggtacaaattttgcat--------gaggcatatttatactaaaacattactt i calJac3.chr3 C 0 C 0 s mm10.chr5 49220435 263 + 151834684 GTTGGAGCTGTCACGGTTAGTTTAATCATAGAC-TCCCTCAAGTTTGCAATGAATATTC-GCTAGTTTAGACTAGCAAATAGCCTCTGCCCAACTAATAAAGGGCAAGCTCTGacaaccacaacaactacaacaataccaacaacaaAAGAGCAGATTATCCCATGAAACCTTAATTAAAGATAAATAACCAATAATATGCTA---------GTGTAATCATTATATAGATGTTAAATGTCACATGGGGGTATATTTATGCTAAAATATTCCCT i mm10.chr5 C 0 I 1495 s canFam3.chr3 3811713 235 - 91889043 ATCATAGCTGTCAGGGTCTTTTC-ATCTCATCCTTTTCTC-AGACTGG-ATGTATAATTGGTTAGTTAGACC-AGCAAA-AGCCTTTGACCTGCAAATGA---GCtaaaattg----tcaaatgtagca-------------aacaaacatacaggctgcccagtgaaattttaattccagataaaggacaaatacttttgtatgtagatatgc------gtgttccaaatgttccac--------ggggcgtatttatactaaaacagtattt i canFam3.chr3 I 197 C 0 a score=873545.000000 s hg38.chr4_KI270790v1_alt 111926 301 + 220246 gctatttatctgatattca-atgaaacggagtgtcctgaattttacttggcaatccta-------------GCAGGGGCTTACTTTGAAAAGTTCCTACCTAAGACTGAGCAGTTAAGGGAGGAAGTtgttatagaatgaatgtttgtgttcctcctaaagtcatagtttgaagccctaatcctcaatgtgatggtacgtggagat-gaagactttgggaggtaattagggttagatgagg-------ccacgaatggtcaggttctcatgatgggattagtgccctta-aaaaacagataccagagagcttgt-tttttttg----tt s panTro4.chr4 21498416 306 + 193495092 gctatttatctgatattcacatgaaacagagtgtcctgaattttacttggcaatccta-------------GCAGGGGCTTACTTTGAAAAGTTCCTTCCTAAGACTGAACAGTCAAGGGAGGAAGTtgttatagaatgaatgtttgtgttcctcctaaagtcatagtttgaagccctaatcctcaatgtgatggtacgtggagat-gaagacttcgggaggtaattagggttagatgagg-------ccacgaatg-tcaggttctcatgatgggattagtgcccttataaaaacagataccagagagcttgt-ttttttttgttttt i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21675784 300 + 198332218 gctatttatctgatattcacatgaaatggagtgtcctgaattttacttggcaatccta-------------------GCTTACTTTGAAAAGTTCCATCCTAAGACTGAACAGTTAAGGGAGGAAGTtgttatagaatgaatgtttgtgttcctcctaaagtcatagtttgaagccctaatcctcaatgtgatggtacgtggagat-gaagactttgggagttaattacagttcgatgagg-------ccacgaatg-tcaggttctcatgatgggattacggcccttataaaaacagataccagagagcttgt-ttttttttgttttt i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20287771 307 - 85365473 gctatttatctgatattcacatgaaactgagtgtcctgaattttacttggcaatccta-------------GCAGGGGCTTACTTTGAAAAGTTCCTTCCTAAGACTGAACACTTAAGGGAGGAAGTtgttatagaatgaatgtttgtgttcctcctaaagtcatagtttgaagccctaatcctcaatgcgacggtacgtggagat-gaagactttgggaggtaattagggttagatgggattagtgcccttatagg-tcagcttctcgtgatgggattagtgcccttataaaaacagataccagagagctttt-tttttt------tt i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16753779 295 + 184069350 gctatttaactgatattcacatgaaactgagtgtcctgaattttacttggcaagccta-------------GCAGGGGCTCACTTTGAAAAGTTCCTTCCTAAGACTGAACACTTAAGGGGGGAAGTtgttatagaataaatgtttgtgttcctccaaaagtcatagtttgaagccctaatcctcaatgtgatggtacgtggagat-gaagactttgggaagtaattaaggttaaatgagg-------ccatgaagg-tcaggttcttatgacgggattagtgcatttatacaaacagatactagagagcttga-t-----------tt i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20803086 295 + 189454096 gctatttaactgatattcacatgaaactgagtgtcctgaattttacttggcaagccta-------------GCAGGGGCTCACTTTGAAAAGTTCCTTCCTAAGACTGAACACTTAAGGGGGGAAGTtgttatagaataaatgtttgtgttcctccaaaagtcatagtttgaagccctaatcctcaatgtgatggtacgtggagat-gaagactttgggaagtaattaaggttaaatgagg-------ccatgaagg-tcaggttcttatgacgggattagtgcatttatacaaacagatactagagagcttga-t-----------tt i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16393673 296 + 178775436 GCTATTTAACTGATATTCACATGAAACTGAGTGTCCTGAATTTTACTTGGCAAGCCTA-------------GCAGGGGCTTACTTTGAAAAGTTCCTTCCTAAGACTGAACACTTAAGGGAGGAAGTTGTTACAgaatgaatgtttgtgttcctccaaaagTCATAGTCTGAAGCCCTAATCCTCAATGTGATGGCACATGGAGAT-GAAGACTTTGGGAAGTAATTCAGGTTAAATGAGG-------CCATGAAGG-TCAGGTTCTTATGACGGGATTAGTGCATTTATACAAACAGATACCAGagagcttgatt-----------tt i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19877454 295 - 48547382 gctatttaactgatattcacatgaaactgagtgtcctaaattttacttggcaagccta-------------GCAGGGGCTTACTTTGAAAAGTTCCTTCCTAAGACTGAACACTTAAGGGAGGCAGTtgttacagaatgaatgttcctgttcctccaaaagtcatagtttgaagcccgaatcctcaatatgatggtacgtggagat-gaagacattgggaagtaattcaggttaaatgagg-------ccatgaagg-tcaggttcttatgacgggattagtgcatttatacaaacagatactagagagcttga-c-----------tt i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21234198 281 - 190850796 gctatttatctgatattcacattaaactgagtgtcctgaattttacttggcaatcctaGTAAGCCCCCCTAGCAGGGGCTTACTTCAAAAAGTTCCTTCCCAAGACTAAACACAAAAGGGAGGAAGTTGTTACAGAATGAatgtttgt-------------------------gccctaatcctcaatgtgatggtatgcggagat-gaagcctttgggaggtaattagggttagatgagg-------ccatgaggg-ttaggttctcatgatgtgattagtatccttacaaaagcagaaaccagagagcttgc-t------------- i calJac3.chr3 C 0 C 0 s canFam3.chr3 3811948 284 - 91889043 gctatttatctgatattcaaacataaccggttgttctggatttt--------CACCCA-------------GCAGCAGCCTACTTTTCAAATTTCCTTTTCCGGGATGGTCACCTAAGGAAGGAAGTtgttatgaactaaatatttctctcctccacaaattcctatgttgaagctctaaccaccaat---atgtcatttggagatgggagcctttgggagatggtca-gtttagaggagg-------tcatgaggg-cgaggccttcacagtgggattaaggccctcataaaaagagccaccagagagcttac-tca----------- i canFam3.chr3 C 0 C 0 e mm10.chr5 49220698 1495 + 151834684 I a score=522011.000000 s hg38.chr4_KI270790v1_alt 112227 143 + 220246 tttttttcaccccctaagtgtgcacaaaga---ggtcatgtgagcacacagcaagatggcagccacctagaaggcaagagaagaagcttcagaat--gaaacctaccttgctggcacattgatcttggacttcccagactctagaacc s panTro4.chr4 21498722 146 + 193495092 tttttttcaccccctaagtgtgcacaaagaagaggtcatgtgagcacacagcaagatggcagccacctagaaggcaagagaagaggcttcagaat--gaaacctaccttgctggcacattgatcttggacttcccagactctagaacc i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21676084 146 + 198332218 tttttttcaccccctaagtgtgcacaaagaagaggtcatgtgagcacatagcaagatggcagccacctagaaggcaagagaagaggcttcagaat--gaaacctaccttgctggcacattgatcttggacttcccagactctagaacc i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20288078 145 - 85365473 ttttttttaccccctaagtgagcacaaagaagaggtcatgtgagcacacagcaagatggcagccacctag-aggcaagagaagaggcttcagaat--gaaacctaccttgctggcacatggatcttggacttcccagactctagaacc i nomLeu3.chr20 C 0 I 3 s rheMac3.chr5 16754074 146 + 184069350 tttttcccaccccctaagtgtgcacaaagaagaggtcatgtgagcacacagcaagatggcagccacctagaagacaagagaagaggcttcagaat--gaaacctaccttgctggcacattgatattgcacttcccagactctagaact i rheMac3.chr5 C 0 I 3 s macFas5.chr5 20803381 146 + 189454096 tttttcccaccccctaagtgtgcacaaagaagaggtcatgtgagcacacagcaagatggcagccacctagaagacaagagaagaggcttcagaat--gaaacctaccttgctggcacattgatcttggacttcccagactctagaact i macFas5.chr5 C 0 I 3 s papAnu2.chr5 16393969 146 + 178775436 tttttcccacccccTAAGTGTGCACAAAGAAGAGGTCATGTGAGCACACGGCAAGATGGCAGCCACCTAGAAGACAAGAGAAGAGGCTTCAGAAT--GAAACCTACCTTGCTGgcacattgatcttggacttctcagactctagaact i papAnu2.chr5 C 0 I 3 s chlSab2.chr27 19877749 146 - 48547382 tttttcccacccccgaagtgtgcacaaagaagaggtcatgtgagcacacagcaagatggcagccacctagaagacaagagaagaggcttccgaat--gaaacctactttgctggcacattgatcttggacttcccagactctagaact i chlSab2.chr27 C 0 I 3 s calJac3.chr3 21234479 144 - 190850796 --ttttccatcccctaagtatgcacaaagaagaggtcatgtgagcacacagcaagatggcagccaactacaaggcaagagaacaggcttcaaaat--gaaacctaccttactggcacattaatcttggacttcccagactctagaacc i calJac3.chr3 C 0 I 198 s mm10.chr5 49222193 117 + 151834684 TTTTTTTTAA---------ATGCACAAAGAAGAGAACATGGGAGCACAAAACAAAATGGAGACCTCCAGTAATCTAGGAGAAGAGATTATAGACT--GAAAT--------------------TCTAGGGCTTTCCAACTTCTTCTACT i mm10.chr5 I 1495 C 0 s canFam3.chr3 3812232 133 - 91889043 -------cgctctccctgtgtgcacaaagagg----taggggagcatac----aaagggtggcctccgacaagccaggagaagaggcttcaagagaagaaacctaccttgccagcaccctaatcttcagcttccaagattccagaatt i canFam3.chr3 C 0 C 0 a score=470453.000000 s hg38.chr4_KI270790v1_alt 112370 139 + 220246 --aaaaataaatttctgttgtttaagctactcaggccatggtg-ttttgttatggcagcccaagcagactaagataGTAATACTAAGCACTTTGGGGCAGTGGCAACTACCCCATCTCACTCAAACCCTTCATCAATGGTGG s panTro4.chr4 21498868 139 + 193495092 --aaaaataaatttctgttgtttaagctactcaggccatggtg-ttttgttatggcagcccaagcagactaagataGTAATACTAAGCACTTTGGGGCAGCGGCAACTACCCCATCTTACTCAAACCCTTCATCAATGGTGG i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21676230 139 + 198332218 --aaaaataaatttctgttgtttaagctactcaggccatggtg-ttttgttatggcagcccaagcagactaagataGTAATACTAAGCACTTTGGGGCAGTGGCAACTACCCCATCTCACTCAAACCCTTCACCAATGGTGG i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20288226 136 - 85365473 --aaaaataaa---ctgttgtttaagctactcaggccttggtg-ttttgttatggcagcccaagcagactgagaTGGTAATACTAAGCACTTTGGGGCAGTGGTAACTATCCCATCTCCCTCAAACCCTTCACCAATGGTGG i nomLeu3.chr20 I 3 C 0 s rheMac3.chr5 16754223 139 + 184069350 --aaaaataaacttctgttgtttaagctattcaggccatggtg-ttttgttacggcagcccgagcagactaagataGTAATACTAAGCACTTTGGGGCAGTGGCAACTACCCAATCTCACTCAAACCCTTCACCAATGGTGG i rheMac3.chr5 I 3 C 0 s macFas5.chr5 20803530 139 + 189454096 --aaaaataaacttctgttgtttaagctattcaggccatggtg-ttttgttacggcagcccgagcagactaagataGTAATACTAAGCACTTTGGGGCAGTGGCAACTACCCAATCTCACTCAAACCCTTCACCAATGGTGG i macFas5.chr5 I 3 C 0 s papAnu2.chr5 16394118 139 + 178775436 --aaaaataaacttctgttgtttaagctattCAGGCcatggtg-ttttgttacagcagcctgagcagactaagatAGTAATACTAAGCACTTTGGGGCAGTGGCAACTACCCAATCTCACTCAAACCCTTCACCAATGGTGG i papAnu2.chr5 I 3 C 0 s chlSab2.chr27 19877898 139 - 48547382 --aaaaataaacttctgttgtttaagctattcgggccatggtg-ttttgttacggcagcccgagcagactaagataGTAATACTAAGCACTTTGGGGCAGTGGCAACTACCGAATCTCACTCAAACCCTTCACCAATGGTGG i chlSab2.chr27 I 3 C 0 s calJac3.chr3 21234821 139 - 190850796 --aaaattaaacttgtgttgtttaagctactcaggccatggtg-ttttgttatggcaggccaggcagactaagataGTAACACTAAGCACTTTGGGGCAGTGGCAGCTATGCAATTATACTCAAACCCTTCACCAATGGTGG i calJac3.chr3 I 198 C 0 s mm10.chr5 49222310 119 + 151834684 --GGGATTATATTTCTA---------------AGTCTATGCTGTTTTTGCTATAGCAACCAACACA-----ACAAAGGAGTGCTAAGCACATATGAACAGCACCAGCTATAT-ATGTCATTCAAAGGCATCCCAAATAAAGG i mm10.chr5 C 0 I 87 s canFam3.chr3 3812365 126 - 91889043 gtgaggagaaacttttgttgtttaagtcac-cagtctgtggac-ttttgtgacagcagcctgagcagaccaagac-----------TCACGTAGTGGCAG---CTACTACTTGCCCTCACTCAAGGCCTTCTCCCATCGTGA i canFam3.chr3 C 0 C 0 a score=485805.000000 s hg38.chr4_KI270790v1_alt 112509 150 + 220246 TACCAAGCTGTGTAGACAACCCTTCTTTGCCTAAATTTCTTGAGTCCCCAAGATGTCCAATCCCTAAAGGAACTAGTATGTAAATAATGGGAGTCATA------TGGGTTCTTTTTTCCC-ATTGAACGACAGAT--CGTTTCTCCACATGATTGGCTG s panTro4.chr4 21499007 150 + 193495092 TACCAAGCTGTGTAGACAACCCTTCTTTGCCTAAATTTCTTGAGTCCCCAAGATGTCCAATCCCTAAAGGAACTAGTATGTAAATAATGGGAGTCATA------TGGGTTCTTTTTTCCC-ATTGAACGACAGAT--CGTTTCTCCACATGATTGGCAG i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21676369 148 + 198332218 TACCAAGCTGTGTAGACAACCCTTCTTTGCCTAAATTTCTTGAGTCCCCAAGATGTCCAATCCCTAAAGGAACTAGTATGTAAATAATGGGAGTCATA------TGGGTTCTTTTTTCCC-ATTGAACTACAGAT--CGTTTCTC--CAGGATTGGCTG i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20288362 150 - 85365473 TACCAAGCTGTGTAGATAACCCTTCTTTGCCTAAATTTCTTGAGTCCCCAAGATGTCCAATCCCCAAAGGAACTAGTATGTAAATAATGGGAGTCATA------TGAGTTCTTTTTTCCC-ACTGAACTACAAAT--CGTTTCTCCACATGATTGGCTG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16754362 150 + 184069350 TAGCAAGCTGTGTCGATAACCCTTCTTTGCCTAAATTTCTTGAGTCCCCAGGATGTCCAATCCCTAAAGGAACTAGTATGTAAATAAGGGGAATCATA------TGGATTCTTTCTTCCC-ATTGAACTACAGAT--CGTTTCTCCACATGATTGGCTG i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20803669 150 + 189454096 TAGCAAGCTGTGTCGATAACCCTTCTTTGCCTAAATTTCTTGAGTCCCCAGGATGTCCAATCCCTAAAGGAACTAGTATGTAAATAAGGGGAATCATA------TGGATTCTTTCTTCCC-ATTGAACTACAGAT--CGTTTCTCCACATGATTGGCTG i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16394257 150 + 178775436 TAGCAAGCTGTGTCGATAACCCTTCTTTGCCTAAATTTCTTGAGTCCCCAGGATGTCCAATCCCTAAAGGAACTAGTATGTAAATAAGGGGAATCATA------TGGGTTCTTTCTTCCC-ATTGAACTACAGAT--CATTTCTCCACATGATTGGCTG i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19878037 150 - 48547382 TAGCAAGCTGTGTCGATAACCCTTCTTTGCCTAAATTTCTTGAGTCCCCAGGATGTCCAATCCCTAAAGGAACTAGTATGTAAATAAGGGGAATCATA------CGGGTTCTTTCTTCCC-ATTGAACTGCAGAT--CGCTTCTCCACATGATTGGCTG i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21234960 158 - 190850796 TTCCAAGCTATGTAGATAACCCTTCTCTGCCTGGATTTCTTGAGTCCCCAAGATGTCCAATACCTAAAGGAACTAGTATGTAAATAAGGGGAGTCATGTGCTGTTGTTTTTTTTTTTTCC-ATTGAACTATAGATAAAATTTCTCCACATGATTGGCTG i calJac3.chr3 C 0 C 0 s canFam3.chr3 3812491 147 - 91889043 TGCCACACTGTGCAGATAACTC--CTCTGCCTCAATGTCTTGAGGCTCCAGAATGTTCAACCCCTAAAGGAGCTACTGTCTGTGTCAGAGGGCTCACC------CATGTTTCCTTTTCCCTGTCTTGCTTCAA----AGTCTTTCCATGTGATTGGCTG i canFam3.chr3 C 0 C 0 e mm10.chr5 49222429 87 + 151834684 I a score=682161.000000 s hg38.chr4_KI270790v1_alt 112659 203 + 220246 ----CACCTTTCCTAT-TTTGCTGTGCATTTCTAAAACTGAGTTCCATTTTTTTTTTCCCCAGG-CTACACTCTTTCAGGTTCCAGTCACTGTTGTGCAACTGTCTGGCTT--ACAATCTATGTTTATTT-----TAAAATCCCACTAAGAATGGATTTAGATATATAAAGTCCCG-GCCTAGTCACTTTTAGTCCTTTTTCCTATTGCCTCTTAAA s panTro4.chr4 21499157 203 + 193495092 ----CACCTTTCCTAT-TTTGCTGTGCATTTCTAAAACTGAGTTCCATTTTATTTTTCCCCAGG-CTACACACTTTCAGGTTCCAGTCACTGTTGTGCAACTGTCTGGCTT--ACAATCTACGTTTATTT-----TAAAATCCCACTAAGAATGGATTTAGATATATAAAGTCCCG-GCCTAGTCACTTTTAGTCCTTTTTCCTATTGCCTCTTAAA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21676517 203 + 198332218 ----TACCTTTCCTAT-TTTGCTGTGCATTTCTAAAACTGAGTTCCATTTTATTTTTCCCCAGG-CTACACTCTTTCAGGTTCCAGTCACTGTTGTGCAAATGTCTGGCTT--ACAATCTATGTTTATTT-----TAAAATCCCACTAAGAATGGATTTAGATATATAAAGTCCCG-GCCTAGTCACTTTTAGTCCTTTTTCCTATTGCCTCTTAAA i ponAbe2.chr4 C 0 I 122 s nomLeu3.chr20 20288512 203 - 85365473 ----CATCTTTCCTAT-TTTGCTGTGCATTTCTAAAACTGAGTTCCATTTTATTTTTCCCCAGG-CTACACTCTTTCAGGTTCCAGTCACTGTTGTGCAACTGTCTTGCTT--ACAATCTATGCTTATTT-----TAAAATCCCACTAAGAATGGATTTAGATATATAAAGTCCTG-GCCTAGTCACTTTTAGTCCCTTTTCCTATTGCATCTTAAA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16754512 203 + 184069350 ----TACCTTGCCTAT-TTTGCTGTGCATTTCTAAAACTGAGTTCCATTTTACTTTTCCCCAGG-CTACACTCTTTCAGGTTCCAGTCACTGTTGCGCAACTGTCTTGCTT--ACAATCTATGTTTATTT-----TAAAATCCCACTAAGAATGGATTTAGATATATAAAGGCCTG-GCCTAGTCACTTTTAGTACCTTTCCCTATTGCCTCTGAAA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20803819 203 + 189454096 ----TACCTTGCCTAT-TTTGCTGTGCATTTCTAAAACTGAGTTCCATTTTACTTTTCCCCAGG-CTACACTCTTTCAGGTTCCAGTCACTGTTGTGCAACTGTCTTGCTT--ACAATCTATGTTTATTT-----TAAAATCCCACTAAGAATGGATTTAGATATATAAAGGCCTG-GCCTAGTCACTTTTAGTACCTTTCCCTATTGCCTCTGAAA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16394407 203 + 178775436 ----TACCTTGCCTAT-TTTGCTGTGCATTTCTAAAACTGAGTTCCATTTTACTTTTCCCCTGG-CTACATTCTTTCAGGTTCCAGTCACTGTTGTGCAACTGTCTTGCTT--ACaatctatgtttattt-----ttaaatcccacTAAGAATGGATTTAGATATATAAAGCCCTG-GCCTAGTCACTTTTAGTCCCTTTCCCTATTGCCTCTGAAA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19878187 203 - 48547382 ----TACCTTGCCTAT-TTTGCTGTGCATTTCCAAAACTGAGTTCCATTTTACTTTTCCCCAGG-CTACACTCTTTCAGGTTCCAGTCACTGTTGTGCAACTGTCTTGCTT--ACAATCTATGTTTATTT-----TAAAATCCCACTAAGAATGGATTTAGATATATAAAGCCCTG-GCCTAGTCACTTTTAGTCCCTTTCCCTATTGCCTCTGAAA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21235118 201 - 190850796 ----CACCTTTCCTAT-TTTGTTGTACATTTCTCAAATTAGATTCCATTTTACTTTTTCTCAGG-CTATACTCTTTCAGGTTCCAGTCACTGTTGTACAACTGTCATGCTT--ACAATTT--TTTTATTT-----TTAAATCCCGCTGAGGATGGATTTAGACATGTAAATCCCTG-GCCTAGTCACATTTAGTCCCTTTCCTCGTTGTTTTTTAAA i calJac3.chr3 C 0 C 0 s mm10.chr5 49222516 183 + 151834684 ----CACATTCCCTGT-CCTGCTGTGCACCTGTAAACCAGGGTTCTATTTCATTTTTTCCCAAATCAACATCC-------TTCCAGTGACTGTTATTAAACTGTTTTAGTTGCACATTCTCTTTTCTCTTCTTCATTAACTCTC------AGTTGATT-------------CCCTGTGGCTACTTAGCTTGGAT---TTTTTTTTTTGTATCTAAAA i mm10.chr5 I 87 I 5 s canFam3.chr3 3812638 186 - 91889043 CTCTCAGCTTCCAGGTGTTTACTGTGCATTTCCCAAGCTGGGTTCCACTT-------------G-ACACACCCTTCCTGGTTCTAGACACTGTTGAACAGT-------CTT--ACAAGCTGCCTTCATTT-----TTAAATCCCACTCATAACGGATTCC-ATATATAAAGCCTTT-GCCTA-CAAATTTCAGCCCGTTTCTCCATGGTCCCTTGAA i canFam3.chr3 C 0 C 0 a score=1308224.000000 s hg38.chr4_KI270790v1_alt 112862 422 + 220246 TGTTGT---------------------------------------------------------TTTATAACTGAATGCTGAAGTCAGATTTTCTTTTT-TACTTCAGAAAA------------CTTTTGCTATTGAACTGTTGAAAATCTTAGCCT-AAATAACAAATTCTTTTGCAAAATTTGTGTGTAGATTCCAAAATCTCCACCTTGTT-GAATAAACTTTTCCAATTAC--TTTGGCACACACATATGAATC----TAGACCTTTTCAGATTTCTACACTGCATTCTACACTAGGCAGTTTAGCTCTTGGTTATAAACCATGGTTTAGTTTCATTATAAACTATGGTTTGGTT--GAGCTCTTGGTTAT--------------------------------------------AAATTATG--------------------------TTTTAAT-----TTTCCTTCTATTCCT-------------------ACTCCATTTTTTCCCGAT----------CTGTCTTTCCCATGCACACACCCATGCATGCTCACACACCC--AAAA-AACTGTTAATCCTCATTTATTTTTCATTCATCTTT s panTro4.chr4 21499360 421 + 193495092 TGTTGT---------------------------------------------------------TTTATAACTGAATGCTGAAGTCAGATTTT-TTTTT-TACTTCAGAAAA------------CTTTTGCTATTGAACTGTTGAAAATCTTAGCCT-AAATGACAAATTCTTTTGCAAAATTTGTGTGTAGATTCCAAAATCTCCACCTTGTT-AAATAAACTTTTCCAATTAC--TTTGGCACACACATATGAATC----TACACCTTTTCAGATTTCTACACTGCGTTCTACACTAGGCAGTTTAGCTCTTGGTTATAAACCATGGTTTAGTTTCGTTATAAACTATGGGTTGGTT--GAGCTCTTGGTTAT--------------------------------------------AAATTGTG--------------------------GTTTAAT-----TTTCCTTCTATGCCT-------------------ACTCCATTTTTTCCTGAT----------CTGTCTTTCCCATGCACACACACATGCATGCTCACACACCC--AAAA-AACTGTTAATCCTCACTTATTTTTCATTCATCTTT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21676842 422 + 198332218 tGTTGT---------------------------------------------------------TTTATAACTGAATGCTGAAGTCAGATTTTCTTTTT-TACTTCAGAAAA------------CTTTTGCTATTGAACTGTGGAAAAGCTTAGCCT-AAATGACAAATTCTTTTGCAAAATTTGTGTGTAGATTCCAAAATCTCCACCTTGTT-AAATAATCTTTTCCAATTAC--TTTGGCACACACATATGAATC----TAGACCTTTTCAGATTTCTACACTGCATTCTACACTAGGCAGTTTAGCTCTTGGTTATAAACCATGGTTTAGTTTCATTATAAACTATGGTTTGGTT--GAGCTCTTGGTTAT--------------------------------------------AAATTATG--------------------------GTTTAAT-----TTTCCTTCCATTCCT-------------------ACTCCATTTTTTCCCAAT----------CTGTCTTTCCCATGCACACACACATGCACGTTCACACACAC--AAAA-AACTGTTAATCCTCACTTATTTTTCATTCATCTTT i ponAbe2.chr4 I 122 C 0 s nomLeu3.chr20 20288715 412 - 85365473 TGTTGT---------------------------------------------------------TTTATAACTGAATGCTGAATTCAGATTTCCTTTTT-TACTTCAGAAAA------------TTTTTGCTATTGAACTGTTGAAAAGCTTAGCCT-AAATGACAAATTATTTGGCAAAATTTGTGTGTAGATTCCAAAATCTCCACCTTGTT-AAATAAACTTTTCCAATCAC--TTTGGCACACACATATGAATC----TAGACCTTTTCAGATTTCTACACTGCATTCTACACTAGGCAGTTTAGCTCTTGGTTATAAACTATGGTTTAGTTTGGTTATAAACTATGGTTTGGTT--GAGCTCTTGGTTAT--------------------------------------------AAATTATG--------------------------GTTTAGT-----TTTCCTTCCATTTCT-------------------ACTCCATTTTTTCCTGAT----------CTGTCTTTCCCATGCACGCGCAC--------TCACACACAC----AC-AACTGTTAATCCTCACTTATTTTTCATTCATCTTT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16754715 422 + 184069350 TGTTGT---------------------------------------------------------TTGATAACTGAATGCTGAATTCAGATTTTCTTTTT-GACTTCAGAAAA------------CTTTTGCTATTGAACTGTTGAAAAGCTTAGCCT-AAATTACAAATTCTTTTGCAAAATTTGTGTGTAGACTCCAAAATCTCCACCTTGTT-AAATAAACTTTTCCAATTAC--TTTGGCATACACCTATTAATC----TAGACCTTTTCAGATTTCTACACTGCATTCTACACTAGGCAGTTTAGCTCTTGGTTATAAACTATGGTTTAGTTTGTTTATAAGCTATGGTCTGGTT--GAGCTCTTGGTTAT--------------------------------------------AAATTATG--------------------------GTTGAGT-----TTTCCTTGCATTCCC-------------------ACTCCATTTCTTCCCAAT----------CTGTCTTTCCCATGCACACGCACATGCGTGCTCACACACAC--ACAA-AACTGTTAATCCTCACTTATTTTTCATTCATCTTT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20804022 422 + 189454096 TGTTGT---------------------------------------------------------TTGATAACTGAATGCTGAATTCAGATTTTCTTTTT-GACTTCAGAAAA------------CTTTTGCTATTGAACTGTTGAAAAGCTTAGCCT-AAATTACAAATTCTTTTGCAAAATTTGTGTGTAGACTCCAAAATCTCCACCTTGTT-AAATAAACTTTTCCAATTAC--TTTGGCATACACCTATTAATC----TAGACCTTTTCAGATTTCTACACTGCATTCTACACTAGGCAGTTTAGCTCTTGGTTATAAACTATGGTTTAGTTTGTTTATAAGCTATGGTCTGGTT--GAGCTCTTGGTTAT--------------------------------------------AAATTATG--------------------------GTTGAGT-----TTTCCTTGCATTCCC-------------------ACTCCATTTCTTCCCAAT----------CTGTCTTTCCCATGCACACGCACATGCGTGCTCACACACAC--ACAA-AACTGTTAATCCTCACTTATTTTTCATTCATCTTT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16394610 422 + 178775436 TGTTGT---------------------------------------------------------TTGATAACTGAATGCtgaattcagattttcttttt-gactttagAAAA------------TTTTTGCTACTGAACTGTTGAAAAGCTTAGCCT-AAATTACAAATTCTTTTGCAAAATTTGTGTGTAGACTCCAAAATCTCCACCTTGTT-AAATAAACTTTTCCAATTAC--TTTGGCATACACATATTAATC----TAGACCTTTTCAGATTTCTACACTGCATTCTACACTAGGCAGTTTAGCTCTTGGTTATAAACTGTGGTTTAGTTTGCTTATAAGCTATGGTCTGGTT--GAGCTCTTGGTTAT--------------------------------------------AAATTATG--------------------------GTTGAGT-----TTTCCTTGCATTCCC-------------------ACTCCATTTCTTCCCAAT----------CTGTCTTTCCCATGCACACGCACATgcgtgctcacacacac--acaa-aactgttaATCCTCActtatttttcattcatcttt i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19878390 422 - 48547382 TGTTGT---------------------------------------------------------TTGGTAACTGAATGCTGAATTCAGATTTTCTTTTT-GACTTTAGAAAA------------CTTTTGCTATTGACCTGTTGAAAAGCTTAGCCT-AAATTACAAATTCTTTTGCAAAATTTGTGTGTAGACTCCAAAATCTCCACCTTGTT-AAATAAACTTTTCCAATTAC--TTTGGCATACACATATTAATC----CAGACCTTTTCAGATTTCTACACTGCATTCTACACTAGGCAGTTTAGCTCTTGGTTATAAACTATGGTTTAGTTTGTTTATAAGCTATGGTCTGGTT--GAGCTCTTGGTTAT--------------------------------------------AAATTATG--------------------------GTTGAGT-----TTTCCTTGCATTCCC-------------------ACTCCACTTTTTCCCAAT----------CTGTCTTTCCCATGCACACGCACATGCGTGCTCACACACAC--ACAA-AACTGTTAATCCTCACTTACTTTTCATTCATCTTT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21235319 416 - 190850796 TGTTGT---------------------------------------------------------TTTATAACTGAATGCTGAATTCAGATTTTCTTTAT-TACTTTAGAAAA------------CTTTTGTTGTAGAACTGTTGAAAAGCTTAGCCT-AAATTCCAAATTCTTTTGCAAAATTTGTATGTAGACTCCAAAATCTCCACCTTGTT-AAATAAATTTTCCCAATTAT--TTTGGC--ACACATATTAATC----TAAACCTTTTCATATTTCTACACTGCATTCTCCACTAGGCACTTTAGCTCTTGGTTATAAACTCTGCTTTAGTTTGGTTATAAACTATGGTTTGGTT--GAACCCTTGGTTAT--------------------------------------------AAATTATG--------------------------GTTTAGT-----TTTCCCTCCATTCCC-------------------ACTCCATTTTTTCCCAAT----------C--TCTTTCCCATGCACA--CACAAGTATGCTTACACACAC--ACAA-AATTCTTAATCCTCACTTATTTTTCATTCATTTTT i calJac3.chr3 C 0 I 1114 s mm10.chr5 49222704 558 + 151834684 TTTTGT-----------------------AACTTCAGATAAGACAGCAAACAATTACCTGAGGCTTGTGAATGAACAGTGAATTTCAATTTTCTTTTTGTTCTTCAAAAAAAATATATATGTGTGTGTGTTGCAAAACTGTTAGAAATTCAGTTCA-GGTTTACAAAATCTTTGATAAATATAGTGTCAAGCCTTATGTTTCTCTATCTTATT--AGTACACAATTCCATCTATAACTTAGC--ACACATACTGATCTGGGTGGACCTCAGGAAACTTAAAAAATTTAATCT--ACTTAGAAATTTAGGTCTTGA-AAAGAACTGAGGTTTAATT--------GAATATTTTCTGATTCAGGACTCTTTTTTCTTGAACTTTCCTGCTCCTATAAAATTTAATACTAAATGTCTACTAAAAATATGTTGTCAGCCCCATTTTTACTCTTTATGTTGAGCCTTCATCTCCTTCAGTTCCTGAGTTGTCTTGAATCTGTAATTCTCATTATTCAGGTT----------TTTTCATTTCTGTGATTATAAACCTGCACTGTAAGATCCAGCAACAA-GACTATTAA-CCCCAATTATTTTTTATTCATCTTT i mm10.chr5 I 5 C 0 s canFam3.chr3 3812824 401 - 91889043 TATTGTTTTCACCTGACAGTAGATTTAGTGGATTCAGGCAAGACTGAAAGAAATGACCCTAGGCTTGTGATTGAATATTGGATTCCAATTTTCCTTTT-CCCTTCAAAAAA------------TGTTTGTTACAGAACCGTCTGAAAACTCAGCCTCCATTTTCAAATTCCTCAGCAAATTTTGTGTACAGCCTCTA--------ACTGTATTAAAATAAACTTTTCCAATTAC--TT----------------ATT----GGACTCCTGTAGGATTTCTATAATTCAATGCCCACTAGTCAGTT-------------------------------------------------------AAGATCTTGATTAT--------------------------------------------AAACTGAA--------------------------GTTTTAT-----TTTTCTCTCATTCCA-------------------GACCTCTTTTTTCCTATTACCAAACTCACTGTCTCTCTCACACACA--------------CACATACAC--ACAATAAGCATTAACGCCTACTTACTTTTCATTTGTCTTT i canFam3.chr3 C 0 C 0 a score=4591160.000000 s hg38.chr4_KI270790v1_alt 113284 1200 + 220246 AAACATAATCAGTGCAGTGCTAAATACATAACTGCTGCTTAACACATTAGCTGTTGATTATTTTCTG---ATATTTGCCTGAATTACACTCAATTATTTTTAACTTTTGAAATTATTT-CTGTATTTTACCTTATTATTAACCTAAGAGGAAA-----AGAGGAAA-AGA---TTTTATCTGGAAAAAAATAAGATGA-TTCTCAAGAAATTTTCCATGAAGAACTTGCCAAAACATAATATAAAAAGAATTGTGGTTTCTGAAATTTACTTAAGGCCTCCTGGATGTTGATCTTTTCACACTGAAGCTGA-TTTAATTTTGCCCCTGAGCTTGTAAGCACCAGATAATTTGCTTGCTTGGATTGTCACTGAGTCTAATAAGTGTCGGTCATTAAT-AAAACTTTTTCAGAACATGAGAATGATGTAGGAATGGTGCGGTTATATTATGAAAGTTGAGTGTAAATGATTCTTGGGAGGAAAAGATTTCCAAATTATGCAACGAATGGAATTTACTCAACTTTTAAAGATCCAAAGGGAGGTAATATGTATGCAGTAATGCTTGTTTAACAGACCTGGGCTGAGCTTTTCTACCCAAAATAGATATATTTTACATAATAATGCTATATATTGGTTTATTATAAGTTACATGAGCCTGGATTCCT-----CTGTAAGTATTGCTTACTTTACCTCATTTCAAATTCATTATAGAATTCATGGTTCTTTTGTGCTTTTTTAGAAAAAGATATTTCCCCAATGGAT--ATTTTACTTCCTTTCAACCTGCTTCTTTACCTCCTCCAAAATTCTAAATTCTGACTATTAAACATGATTTAATGAGCTGAGAGTAGGTATGTTCCTTCACTGTGATTACCCAATACCCCATGCATACCTCAATCCTGCCGAGTTGCAATCTTCATTTTGCCTGACTATATCTCTTGTGCTAAACTACTGGCTCTTCAGAAGCAAGGCC-GGCTGTTATCCTCAA-GGTGTGTAAGTCCTAGCACAT-GCTGGTACTTGACATATGCTTGATATACAAAT-------TAAAAATGAGCCGTGA-----------TGATCCCAGGCACT------C--AATACTAGTGGCAGTACAGTAAAGTGGCTGAGAGCAAGA--CGGTCTCTGCAGA----------TCCTTGGCTTAAATTCCCAT----------TGAAAACATTTCATTTCATTTAGAGAAATGTCACTTTGAAAAGTTCTG-------------------------------------------------------------------------------GC-ATTT-----------------------------TATGTCCTTTTTA-------ATGCTAACC-----------------------------------------------ACAG s panTro4.chr4 21499781 1198 + 193495092 AAACATAATCAGTGCAGTGCTAAATACATAACTGCTGCTTAACACATTAGCTGTTGATTATTTTCTG---ATATTTGCCTGAATTACACTCAATTATTTTTAATTTTTGAAATTATTT-CTGTATTTTACCTTATTATTAACCTAAGAGGAAA-----AGAGGAAA-AGA---TTTTATCTGGAAAAAA-TAAAATGA-TTCTCAAGAAATTTCCCATGAAGAACTTGCCAAAACATAATATAAGAAGAATTGTGGTTTCTGAAATTTACTTAAGGCCTCCTGGATGTTGATCTTTTCACTCTGAAGCTGA-TTTAATTTTGCCCCTGAGCTTGTAAGCACCAGATAATTTGCTTGCTTGGATTGTCAC-GAGTCTAATAAGTGTTGGTCATTAAT-AAAACTTTTTCAGAACATGAGAATGATGTAGGAATGGTGCGGTTATATTATGAAAGTTGAGTGTAAATGATTCTTGGGAGGAAAAGATTTCCAAATTATGCAAAGAATGGAATTTACTCAACTTTTAAAGATCCAAAGGGAGGTAATATGCATGCAGTAATGCTTGTTTAACAGACCTGGGCTGAGCTTTTGTACCCAAAATAGATATATTTTACATAATAATGCTATATATTGGTTTATTATAAGTTACATGAGCCTGGATTCCT-----CTGTAAGTATTGCTTACTTTACTTCATTTCAAATTCATTATAGAATTCATGGTTCTTTTGTGCTTTTTTAGAAAAAGATATTTCCCCAATGGAT--ATTTTACTTCCTTTCAGCCTGCTTCTTTACCTCCTCCAAAATTCTAAATTCTGACTATTAAACATGATTTAATGAGCTGAGAGTAGGTATGTTCCTTCTCTGTGATTACCCAATACCCCATGCATACCTCAATCCTGCCGAGTTGCAATCTTCATTTTGCCTGACTATATCTCTTGTGCTAAACTACTGGCTCTTCAGAAGCAAGGCC-GGCTGTTATCCTCAA-GGTGCATAAGTCCTAGCACAT-GCTGGTACTTGACATATGCTTGATATACAAAT-------TAAAAATGAGCCGTGA-----------TGATCCCAGGCACT------C--AATACTAGTGGCAGTACAGTAAGGTGGCTGAGAGCAAGA--CGGTCTCTGCAGA----------TGCTTGGCTTAAATTCCCAT----------TGAAAACATTTCATTTCATTTAGAGAAATGTCACTTTGAAAAGTTCTG-------------------------------------------------------------------------------GC-ATTT-----------------------------TATGTCCTTTTAA-------ATGCTAACC-----------------------------------------------ATAG i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21677264 1199 + 198332218 AAACATAATCAGTGCAGTGCTAAATACATAACTGCTGCTTAACACATCAGCTGTTGATTATTTTCTG---ATATTTGCCTGAATTACACTCAATTATTTTTAATTTTTGAAATTATTT-CTGTATTTTACCTTATTATTAATCTAAGAGGAAA-----AGAGGAAA-AGA---TTTTGTCTGGAAAAAA-TAAAATGA-TTCTCAAGAAATTTTCCATGAAGAACTTGCCAAAACATAATATAAAAAGAATTGTGGTTTCTGAAATTTACTTAAGGCCTCCTGGATGTTGATCTTTTCACTCTGAAGCTGA-TTTAATTTTGCCCCTGAGCTTGTAAGCACCAGATAATTTGCTTGCTTGGATTGTCACTGAGTCTAATAAGTGTCGGTCATTAAT-AAAACTTTTTCAGAACATGAGAATGATGTAGGAATGGTGCGGTTATATTATGAAAGTTGAGTGTAAATGATTCTTGGGAGGAAAAGATTTCCAAATTATGCAAAGAATGGAATTTACTCAACTTTTAAAGATCCAAAGGGAGGTAATATGCATGCAGTAATGCTTGTTTAACAGACCTGGGCTGAGCTTTTCTACCCAAAATAGGTATATTTTACATAATAATGCTATATATTGGTTTATTATAAGTTACATGAATCTGGATTCCT-----CTGTAAGTATTGCTTACTTTACTTCATTTCAAATTCATTATAGAATTCATGGTTCTTTTGTGCTTTTTTAGAAAAAGATATTTCCCCAATGCAT--ATTTTACTTCCTTTCAGCCTGCTTCTTTACCTCCTCCAAAATTCTAAATTCTGACTATTAAACATGATTTAATGAGCTGAGAGTAGGTATGTTCCTTCTCTGTGATTACCCAATACCCCATGCATACCTCAATCCTGCCGAGTTGCAATCTTCATTTTGCCTGGCTATATCTCTTGTGCTAAACTACCGGCTCTTCAGAAGCAAGGTC-GGCTGTTATCCTCAA-GGTGCATAAGACCTAGCACAT-GCTGGTACTTGACATATGCTTGATATACAAAT-------TAAAAATGAGCCGTGA-----------TGATCCCAGGCACT------C--AATACTAGTGGCAGTACAGTAAAGTGGCTGAGAGCAAGA--TGGTCTCTGCAGA----------TCCTTGGCTTAAATTCCCAT----------TGAAAACATTTCATTTCATTTAGAGAAATGTCACTTTGAAAAGTTCTG-------------------------------------------------------------------------------GC-ATTT-----------------------------TATGTCCTTTTTA-------ATGCTAACC-----------------------------------------------ATAG i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20289127 1199 - 85365473 AAACATAATCAGTGCAGTGCTAAATACGTAACT-TTGCTTCACACATCAGCTGTTGATTATTCTGTG---ATATTTACCTGAATTACACTCAATTATTTTTAATTTTTGAAATTTTTTCCCGTATTTTACCTTATTATTAATCTAAGAGGAAA-----AGAAGAAA-AGA---TTTTATCTGGAAAAAA-TAAAATGA-TTCTCAAGAAATTTTCCATGAAGAACTTGCCAAAACATAATACAAAAAGAATTGTGGTTTCTGAAATTTACTTAAGGCCTTCTGGATGTTGATCTTTTCACTCTGAAGCTGA-TTTAATTTTGCCCCTGAGCTTATAAGCACCAGATAATTTGCTTGCTTGGATTGTCACTGAGTCTAATAAGTGTTGGTCATTAAT-AAAACTTTTTCAGAACATGAGAATGATGTAGGAATGGTGCGGTTATATTATGAAAGTTGAGTGTAAATGGTTCTTGGGAGGAAAAGATGTACAAATTATGCAAAGAATGGAATTTACTCAACTTTTAAAGATCCAAAGGGAGGTAATATGTATGCAGTAATGCTTGTTTAACAGACCTGGGCTGAGCTTTTCTACCAAAAATAGATATATTTTACATAATAATGCTATATATTGGTTTATTATAAGTTACATGAGCCTGGATTCCT-----CTGTAAGTATTGCTTACTTTACTTCATTTCAAATTCATTATAGAATTCATGGTTCTTTTGAGCTTTTTTAGGAAAAGATATTTCCCCAATGGAT--ATTTTACTTCCTTTCAGCCTGCTTCTTTACCTCCTCCAAAATTCTAAATTCTGACTATTAAACATGATTTAATGAGCTGAGAGTAGGTGTGTTCCTTCTCTGTGATTACCCAATACCCCATGCATACCTCAATCCTGCCGAGTTGCAATCTTCATTTTGCCTGGCTATATCTCTTGTGCTAAACTACTGGCTCTTCAGAAGCAAGGCCTGGCTGTTATCCTCAA-GGTGCATAAGTCCTAGCACAT-GCTGGTACTTGACATATGCTTGATATACAAAT-------TAAAAATGAGCTGTGA-----------TGATCCGAGGCACT------C--AATACTAGTGGcagtacagtaaagtggctgagagcaaga--cggtctctgcaga----------tccttggcttaaattccCAT----------TGAAAACATCTCATTTCATTTAGAGAAATGTCACTTTGAAAAGTTCTG-------------------------------------------------------------------------------GC-ATTT-----------------------------TATGTCCTTTT-A-------ATGCTAACC-----------------------------------------------ATAG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16755137 1196 + 184069350 AAACATAATCAGTGCAGTGCTAAATACATAACTGTTGCTTAAAATGTCAGCTGTTGATTAGTTTCTG---ATATTTGCCTGAATTACACTCAACTATTTTTAATTTTTGAAATTATTT-CTGTATTTTACCTTATTATTAATCTAAGAGGAAA-----AGAAGAAA-AGA---TTTTATCTGGAAAAAA-TAAAATGA-CTCTCGAGAAATTTTCCATAAAGAACTTGCCAAAATGTAATATAAAAAGAATCGTGGTTTCTGAAATTTACTTAAGGCCTTCTGGATGTTGATCTTTTCACTCCAAAGCTGA-TTTAAGTTTGCCCCTGAGCTTGTAAGCACCAGATAATTTGCTTGCTTGGATTGTCACTGAGTCTAATATGTGTTGGTCATTAAT-AAAACTTTTTCAGAACATGAGAATGATGTAGGAACGGTGTGGTTATATTATGAAAGTTGAGTGTAAATGATTCTTGGGAGGAAAAGATTTCCAAATTATGCGAAGAATGGAATTTACTCAACTTTTAAAGATCCAAAGGGAGGTAATATGTATGCAGTAATGCTTGTCTAACAGACCTGGGCTGAGCTTTTCCACCCAAAATAGATATATTTTACATAATAATGCTATATATTGGTTTATTATAAGTTACATGAGCCTGGATTCCT-----CTGCAAGTATTGCTTACTTTACTTCATTTCAAATTCATTATAGAATTCATGGTTCTTTTGTGCTTTTTTAGAAAAAGATATTTCCCCAATGGAT--ATTTTACTTCCTTTCAGCCAGCTTCTTTACCTCCTCCAAAATTCTAAATTCTGACTATTAAACATGATTTAATGAGCTTAGAGTAGGTGTGTTCCTTCTCTGTGATTACCCAATACCCCGTGCATACCTCAATCCTGCCGAGTTGCAACCTTCATTTTGCCTGGCTATATCTCTTGTGCTAAACAACTGGCTCTTCAGAAGCAAGGCCTGGCTGTTATCCTCAA-GGTGCATAAGTCCTGGCACAT-GCTGGTACTTGACACATGCTTGCTATACAAAT-------TAAAAATGAGCTGTGA-----------TGATCCCAGGCACT------C--AATACTAGTGGCAGTACAGTGAAGTGGCTGAGAGCAAGA--TGGTCTCTGCAGA----------TCCTTGACTTAAATTCCCAT----------CGAAAACATTTCATTTCATTTTGAGAAATGTCACTTTGAAAAGTTCTG-------------------------------------------------------------------------------AC-ATTT-----------------------------TATGTCCTTTTTA-------ATGCTAACC--------------------------------------------------- i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20804444 1196 + 189454096 AAACATAATCAGTGCAGTGCTAAATACATAACTGTTGCTTAACATGTCAGCTGTTGATTAGTTTCTG---ATATTTGCCTGAATTACACTCAACTATTTTTAATTTTTGAAATTATTT-CTGTATTTTACCTTATTATTAATCTAAGAGGAAA-----AGAAGAAA-AGA---TTTTATCTGGAAAAAA-TAAAATGA-TTCTCGAGAAATTTTCCATAAAGAACTTGCCAAAATGTAATATAAAAAGAATCGTGGTTTCTGAAATTTACTTAAGGCCTTCTGGATGTTGATCTTTTCACTCCAAGGCTGA-TTTAATTTTGCCCCTGAGCTTGTAAGCACCAGATAATTTGCTTGCTTGGATTGTCACTGAGTCTAATATGTGTTGGTCATTAAT-AAAACTTTTTCAGAACATGAGAATGATGTAGGAACGGTGCGGTTATATTATGAAAGTTGAGTGTAAATGATTCTTGGGAGGAAAAGATTTCCAAATTATGCGAAGAATGGAATTTACTCAACTTTTAAAGATCCAAAGGGAGGTAATATGTATGCAGTAATGCTTGTCTAACAGACCTGGGCTGAGCTTTTCCACCCAAAATAGATATATTTTACATAATAATGCTATATATTGGTTTATTATAAGTTACATGAGCCTGGATTCCT-----CTGCAAGTATTGCTTACTTTACTTCATTTCAAATTCATTATAGAATTCATGGTTCTTTTGTGCTTTTTTAGAAAAAGATATTTCCCCAATGGAT--ATTTTACTTCCTTTCAGCCAGCTTCTTTACCTCCTCCAAAATTCTAAATTCTGACTATTAGACATGATTTAATGAGCTTAGAGTAGGTGTGTTCCTTCTCTGTGATTACCCAATACCCCGTGCATACCTCAATCCTGCCGAGTTGCAACCTTCATTTTGCCTGGCTATATCTCTTGTGCTAAACAACTGGCTCTTCAGAAGCAAGACCTGGCTGTTATCCTCAA-GGTGCATAAGTCCTGGCACAT-GCTGGTACTTGACACATGCTTGCTATACAAAT-------TAAAAATGAGCTGTGA-----------TGATCCCAGGCACT------C--AATACTAGTGGCAGTACAGTGAAGTGGCTGAGAGCAAGA--TGGTCTCTGCAGA----------TCCTTGACTTAAATTCCCAT----------CGAAAACATTTCATTTCATTTCGAGAAATGTCACTTTGAAAAGTTCTG-------------------------------------------------------------------------------AC-ATTT-----------------------------TATGTCCTTTTTA-------ATGCTAACC--------------------------------------------------- i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16395032 1220 + 178775436 aaaCATAATCAGTGCAGTGCTAAATACATAACTGTTGCTTAACATGTCAGCTGTTGATTAGTTTCTG---ATATTTGCCTGAATTACACtcaactatttttaatttttgaaattattt-ctgtattttacctTATTATTAAtctaagaggaaa-----agaagaaa-aga---ttttatctggaaaaaa-taaaatga-ttctcGAGAAATTTTCCATAAAGAACTTGccaaaatgtaatataaaaagaaTCGTGGTTTCTGAAATTTACTTAAGGCCTTCTGGATGTTGATCTTTTCACTCCAAAGCTGA-TTTAATTTTGCCCCTGAGCTTGTAAGCACCAGATAATTTGCTTACCTGGATTGTCACTGAGTCTAATATGTGTTGGTCATTAAT-AAAACTTTTTCAGAACATGAGAATGATGTAGGAAAGGTGCGGTTATATTATGAAAGTTGAGTGTAAATGATTCTTGGGAGGAAAAGATTTCCAAATTATGCGAAGAATGGAATTTACTCAACTTTTAAAGATCCAAAGGGAGGTAATATGTATGCAGTAATGCTTGTCTAACAGACCTGGGCTGAGCTTTTCCAcccaaaatagatatattttacataataatgCTATATATTGGTTTATTATAAGTTACATGAGCCTGGATTCCT-----CTGTAAGTATTGCTTACTTtacttcatttcaaattcattatgGAATTCATGGTTCTTTTGTGcttttttagaaaaagatatttcccCAATGGAT--ATTTTACTTCCTTTCAGCCTGCTTCTTTACCTCCTCCAAAATTCTAAATTCTGACTATTAAACATGCTTTAATGAGCTTAGAGTAGGTGTGTTCCTTCTCTGTGATTACCCAATACCCCGTGCATACCTCAATCCTGCCGAGTTGCAACCTTCATTTTGCCTGGCTATATCTCTTGTGCTAAACAACTGGCTCTTCAGAAGCAAGGTCTGGCTGTTATCCTCAA-GGTGCATAAGTCCTGGCACAT-GCTGGTACTTGACACATGCTtgatatacaaat-------taaaaatgagctGTGA-----------TGATCCCAGGCACT------C--AATACTAGTGGCAGCACAGTAAAGTGGCTGAGAGCAAGA--TGGTCTCTGCAGA----------TCCTTGACTTAAATTCCCAT----------CgaaaacatttcatttcatttagagAAATGTCACTTTGAAAAGTTCTG-------------------------------------------------------------------------------AC-ATTT-----------------------------TATGTCCTTTTTA-------ATGCtaacca------tatatacatata--------tatatat-------------atat i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19878812 1213 - 48547382 AAACATAATCAGTGTAGTGCTAAATACATAACTGTTGCTTAACATGTCAGCTGTTGATTATTTTCTG---ATATTTGCCTGAATTACACTCAACTATTTTTAATTTTTGAAATTATTT-CTGTATTTTACC---TTATTAATCTAAGAGGAAA-----AGAAGAAA-AGA---TTTTATCTGGAAAAAA-TAAAATGA-TTCTCGAGAAATTTTCCATAAAGAACTTGCCAAAATGTAATATAAAAAGAATCGTGGTTTCTGAAATTTACTTAAGGCCTTCTGGATGTTGATCTTTTCACTCCAAAGCTGA-TTTAATTTTGCCCCTGAGCTTGTAAGCACCAGATAATTTGCTTGCTTGGATTGTCACTGAGTCTAATATGTGTTGGTCATTAAT-AAAACTTTTTCAGAACATGAGAATGATGTAGGAACGGTGTGGTTATATTATGAAAGTTGAGTGTAAATGATTCTTGGGAGGAAAAGATTTCCAAATTATGCGAAGAATGGAATTTACTCAACTTTTAAAGATCCAAAGGGAGGTAATATGTATGCAGTAATGCTTGTCTAACAGACCTGGGCTGAGCTTTTCCACCCAAAATAGATATATTTTACATAATAATGCTATATATTGGTTTATTATAAGTTACATGAGCCTGGATTCCT-----CTGTAAGTATTGCTTACTTTACTTCATTTCAAATTCATTATAGAATTCATGGTTCTTTTGTGCTTTTTTAGAAAAAGATATTTCCCCAATGGAT--ATTTTACTTCCTTTCAGCCTGCTTCTTTACCTCCTCCAAAATTCTAAATTCTGACTATTAAACATGATTTAATGGGCTTAGAGTAGGTGTGTTCCTTCTCTGTGATTACCCAATACCCCATGCATACCTCAATCCTGCCGAGTTGCAACCTTCATTTTGCCTGGCTATATCTCTTGTGCTAAACAACTGGCTCTTCAGAAGCAAGGCCTGGCTGTTATCCTCAA-GGTGCATAAGTCCTGGCACAT-GCTGGTACTTGACACATGCTTGATATACAAAT-------TAAAAATGAGCTGTGA-----------TGATCCCAGGCACT------C--AACACTAGTGGCAGTACAGTAAAGTGGCTGAGAGCAAGA--TGGTCTCTGCAGA----------TCCTTGACTTAAATTCCCAT----------CGAAAACATTTCATTTCATTTCGAGAAATGTCACTTTGAAAAGTTCTG-------------------------------------------------------------------------------AC-ATTT-----------------------------TATGTCCTTTTTA-------ATGCTAACC----------atatatata--------tatacac-------------acac i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21236849 1194 - 190850796 AAACATAATCAGTGAAGTACTAAATACATAGCAGTTGTTTACCACATCAGCTGTTGATTATTTTC------TATTTGCCCGAATTACATGCAATTATTTTTATTTTTTGAAAGTATTT-CTGTATTTTACCTTATTATTAATCTAAGAGAAAA-----ACAAGAAACAAA---TTTTATCTACAAAAAA-TAAAATTG-TTCTTGAAAAAATTTCCATAAAGTACTTGCCAAAAGGTAATATAAAAAGAATTGTGGTTTCTGAAATTTACTTAAGGACTTCTGGGTGTTGATCTTTTCGCTCTGAAGCTGA-TGTATTTTTGCCCC-GAGCTTGTCAGCA-CAGATAATTTGCTTGCTTGGATTGCCACTGAGTCTAGTAAGTGTTGGTCATTAAT-AAAACTTTTTCAGAACATGAAAATGACATAGAAACGGTGCAGTTATATTCTGAGACTTGAGTCTAAATGATTCTTGGGAGGAAAAGCTTTCCAAATTATGGAAAG-ATGAAATTTACTCAACTTTTAAAGATCCAGAGGGAGATAATATGTATGCAGTAATGCTTGTTTAACAGACTTGGGCTGAGCTTTTCCACCCAAAATAGATATACTTTACATAATAATGCTATATATTGGTTTATTATAAGTTACATGAGCCTGCATTCCT-----CTGTAAGTATGGCTTACTTTACTTTGTTTCAAATTCATTATGGAATTCATGGCTGTTTTGTGCTTTTTGAAAAAAAGATATTTCCCCAATGGCT--ATTTTACCTCCTTTCAACCTGCTTCTTCACCTCCTCC-AAATTCTAAAATCTGACTATTAAACATGATTTAATGAGCTGAGAGtaggtgtgttccttctctgtgattacccaataccctgtgcatacctcaatcctgccaagttgcaatcttcattttggctggc--tatctcttgtgctaaactactggctcttcagaagcaaggcctggctattatcctcaattgtgcataagtcctagcacat-gctggtacttgatatatgcttgatatatgaat-------taaAAATGAGCTGTGA-----------TGATCTGAGGCACT------C--AATACTAGAGGCAGTGCAGTAAAGTGGCTGAGAGCAAGA--CAGTGTCTGCAGA----------TCCTGGGCTTAAATTCCCAT----------TGAAAGCATTTCCTTTCATTTAAAGAAATGTCACTTTGAAAAGGTCTC-------------------------------------------------------------------------------GCAATTT-----------------------------TATGTCCTTTTTA-------ATGCTAACC-----------------------------------------------ATAG i calJac3.chr3 I 1114 C 0 s mm10.chr5 49223262 1296 + 151834684 TAACATGATTAGCATGGTGCTAAATATGCACCAGTGTCTCATTACATCAGCTACTGATTAATTTATG---ATGTTAATTTGAGTTATATCCAATTATTTCTAATTTTTGAAATTATTT-CTGAGCATTACTATATCATTCATTTTAGGGAAAAGCAGGAGAAAAAA-ATG---TTAAACTTGAAAAAAA-TATAATTAGCTCTTAATAAATCTGCTGTGCAGGTCCTGCAAAAAAAAATCATAAAGAACATTATGCTTTATGGAACTTACTTTATGCCACCTGCATGTTGACCTTCTATCTTGAAAGCTCATTTTAGTTTTGACCCTAAACTTACTAGC-CCGG--AATCCACTTGCTTAGATTGTCCTTGAGTCTATCAAGTGTCAGTTACTAGTAAAAACCTATTAAGAGCACAGTAATGATTTGGGAGAAGCTAAGTTCCATGCTACAAGTTGAGGGAAAATGATTCTTGGGAGGAAAAGCTTTTTGAAATATGCAAAGAATGAAATTTACTCAAGTCTTAAAGATCCAAAGGGAGAGAATATATATTCAGTAATGCTTGTTTAACTGACTTGGGCTGAGCTGTTCCGCCCAAAATAGATATATTTTACATAAGAATGCTATATACTGG-TTATTATAAGTCCCACAAACCGGGTTTTTTTTTTCCTACAAGTTTTGCTTACTTCCGTGCATTTTAAACTCATTACTGAATCCTTGGTTATTTCGTACTTTTT-AGAAGAGGATA------------------TTTGGTTGCTTTAAGCCTGTTTCTTCACCTCCTGCATTATTCACAATTCTGACCATCAAACATGATTCGATGAACCAAGAGAGGACATGCACCTTGTATGCGGCTCCCCCATGCCCTGTGCCTACCTCTGCTCTCCCAAGAGTCAGTTGTC-----------------CCCTGGTGTGAATCAA--GGTGCCTCAAATGCAGGGTC---TTGATATATTCCC-TGCCTATGAGTCCCGGCACA--GAGGGCA---------------------------------------GAGCTCTAA-----------GTATCC-AGTCACTCAAATAC--AACAATCAGGGCAGT-CAGTAATATGTGTAATAG-AAAA--TAATTTCTGCAGA-------------------CAAGTTTCCTTCCTGCTCCTCTAGAAGTATTTCATTTTACTTAAAATAAGATTACTTTGAAAAGTTCTGCattgcttctcggccttttggctaaaatcaagtgtGAAAAGTTCTGCAACATTGATGTTATGTGGAGGTGTACATGCATGC-ATTTTTCtgtgcatgtggaaaagggagaacaactttgtcattccta-------ataacatccactttattttttaaaaacaagatctattatggacctccgtctcaccaacag i mm10.chr5 C 0 I 128 s canFam3.chr3 3813225 1240 - 91889043 GAGCATAATTAG-GAAGTGCTAAGCATGTAGCAGTTGCTCTATACATCAGTTATCGATTGTTTTCTGGCAACATTAACCTGAGAAATATTTGGTACTTTCTGATTTGTGAAATTATAT-CTGACTTTTACCCTCTTATTAATCTAAGAAGAAA-----ATAAGAGA-AAGATTTTTTGCCTGGAAAAAA-TAAAATTA-CCCCGAAGTAATTTCCCATAAAATACTTGCAAAAACACAATATAGAAAGAATTGTGTTTTATGAAATTTACTTTAGGCCTCCTGTATGTTGATCTTTTCATACCAAAGCTGA-TTTCATTTTGGCCCTCAGCTTATAAGCACAGAATAATTCACTTGCTTGGATGGTTGCAGAGTCTAATAAGTGTTGATCGTTAAT-AAAACCT-TTCAGAACATGATAATGGCTTAGGCAAAGCACATTTATATACTAAAAGTTGAAGGGAAATGATTCTTGAGAGGAAAAGCTTTCAGAATTATGCAAAGAATGAAATTTACTCAACTTTTAAAGATCCAATGGGAGAGAATATGTATGCAGTTATGCTTGTTTAACCAACTTGGGCTGAGCTTTTCTACCCAAAATAGATATATTTTACATAAGAATGGTATATATTGGTTTATTATAAGTTACATGAGCCTGGTTTCCT-----CTGTAAGTATTGCTTACTTTACTTCATTTCAAATTCATTATCGAATTCATGGCTCCTTTGCACTTTTTCATAAAAAGATATTTCCCCCATGAATGCATTTTACTTCCGTTCAGCCTGCTTCTTCACCTCCTCTAAAATTCTAAATTCTGACTATCAAACAGGATTTAATGAGCTGAGAGTAGGTGTGTTCCTCAGCTGTGATTATCCAATACCCAGTGCATCCCTCAATCCTGCTGAGCtgcaatcaccactttgcttggctgtatcccc-acactaacccttgagtttcccaaaagcaaggtgtgcttatgattcttca-aaagcatgagtcctagctcatggctggtacttgatatatgGCCGATGCACAAACAGATAAATAAATAGGGGCTCTAAAAGGAGCACAGTGACCC-AGGCACT------CAGAATACTAGAAG----GCAGCAAAATAGCTGAGAGCAAAAACCCATTTCTGTAGGTAGACTGTTTTCCTGGGCTTAAAATCCCAT----------GGAAAACATTTCATTCCATTGAAAGGTATATCACCTCAAAATGTTCTG-------------------------------------------------------------------------------TT-ATCT-----------------------------TCTGACATTTTTATCCTTGTAGGCTGATC-----------------------------------------------ATAA i canFam3.chr3 C 0 C 0 a score=191331.000000 s hg38.chr4_KI270790v1_alt 114484 99 + 220246 TTATATTTATCTTTTTTAC------------------------------TATTATTCAATGTGATC----------------------------------------CTATGTTGTCTGTACTTTTAACGGCACTAG-AAAAAAAA---------CA-AGTATCTCCCTACCAATAATAAT s panTro4.chr4 21500979 96 + 193495092 TTATATTTATCTTTTTTAC------------------------------TATTATTCAATGTGATC----------------------------------------CTATGTTGTCTGTACTTTTAACGGCACTAG-AAAAAAAA-------------GTATCTCCCCACCAATAATAAT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21678463 98 + 198332218 TTATATTTATCTTTTTTAC------------------------------TATTATTCAATGTGATC----------------------------------------CTATGTTGTCTGTACTTTTAATGGCACTAG-AAAAAAAC----------G-AGTATCTCCCCACCAATAATAAT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20290326 101 - 85365473 TTATATTTATCTTTTTTAC------------------------------TATTATTCAATGTGATC----------------------------------------CTATGTTTTCTGTACTTTTAACGGCACTGG-AAAAAAAA-------AACA-AGTATCTCCCCACCAATaacaat i nomLeu3.chr20 C 0 I 664 s rheMac3.chr5 16756333 97 + 184069350 --ATATATATATATATAGC------------------------------TATTATTCAGTGTGATC----------------------------------------CTATGCT-TTTGGACTTTTAATGGCACTAG-AAAAAATC--------ACA-AGTATCTCCCCACCAATAATAAT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20805640 93 + 189454096 ------ATATATATATAGC------------------------------TATTATTCAGTGTGATC----------------------------------------CTATGCT-TTTGGACTTTTAATGGCACTAG-AAAAAATC--------ACA-AGTATCTCCCCACCAATAATAAT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16396252 100 + 178775436 atatatatatatatatggc------------------------------tattATTCAGTGTGATC----------------------------------------CTATGCT-TTTGGACTTTTAATGGCActagaaaaaaaac--------aca-agtatCTCCCCACCAATAATAAT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19880025 98 - 48547382 acatatatatatatatagc------------------------------tattatTCAGTGTGATC----------------------------------------CTATGCT-TTTAGACTTTTAATGGCACTAG-AAAAAAA---------ACA-AGTATCTCCCAACCAATAATAAT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21238043 104 - 190850796 TTATATTTATTTTTTTAAC------------------------------TATTATTCAATGTGATC----------------------------------------CCACATTTTCTATACTTTTAATGGCACAGA-AAAAAAAAAAAAAAAAACG-AGTATCTTCCAACCAATAT---- i calJac3.chr3 C 0 C 0 s mm10.chr5 49224686 161 + 151834684 tcatacttatattctttacaaactgagatgtctttcaagcTATTGGCATTAGCGTTCACAATGACCATTATTATAATTTTCCTTACAAGTAGTCTTTACAACACGTCTATGTTTTCAGTGCCTTCTGCAGGATTAG-AATAAAAG---------CA-AATA-----CTACCAACACT--- i mm10.chr5 I 128 C 0 s canFam3.chr3 3814465 76 - 91889043 TTATATTTGTCCTTTTAAC------------------------------TGATATCCATGGTGTAC----------------------------------------CAGTGTT-T----------------------AAGACAAC--------CCATAGGACACCCTAACATATAAC--- i canFam3.chr3 C 0 C 0 a score=730285.000000 s hg38.chr4_KI270790v1_alt 114583 211 + 220246 GAGTCACACAAGTGAAACATATTTAGGTAAAT-AG-AAATTTTGCTATATTTAACCAATCACTATTG-AACTTAATACCATAATAaatta------tacccatttacatttgattagcacttgcaagtttata-cac-c-tttcccataaattatcttatttaaAATGGCACATTAG-CTTTTTAATTATATAAGAATTTCACAAATATGTGGTTTTGTGGAAA s panTro4.chr4 21501075 211 + 193495092 GAGTCACGCAAGTGAAACATATTTAGGTAAAT-AG-AAATTTTACTATATTTAACCAATCACTATTG-AACTTAATACCATAATAaatta------tacccatttacatttgattagcacttggaagtttata-cac-c-tttcccataaattatcttatttaaAATGGCACATTAG-CTTTTTAATTATATAAGAATTTCACGAATATGTGGTTTTGTGGAAA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21678561 209 + 198332218 GAGTCACACAAGTGAAACATATTTAGGTAAAT-AG-AAATTTTGCTATATTTAACCAATCACTATTG-AACTTAATACCATAATAaatta------tacccacttaaatttgattagcacttgcaagtttata-cac-c-tttcccataaattatcttattt-aaATGGCACATTAG-CTTTTTAATTATATAAAAA-TTCATGAATATGTGGTTTTGTGGAAA i ponAbe2.chr4 C 0 I 270 s nomLeu3.chr20 20291091 194 - 85365473 GAGTCACACAAGTGAAACATATTTAGGTAAAC-AG-AAATTTTGCTATATTTAACAAATCACCATTG-AACTTAATACCATAATAAATAA------TACCCACTTACATTTGATTAGCA-------------------C-TTTCCCATAAATTATCTTATTTAAAATGCCACATTAG-TTTTTTAATTATATAAGAATTTCATGAATATGTGGTTTTGTGGAAA i nomLeu3.chr20 I 664 C 0 s rheMac3.chr5 16756430 211 + 184069350 GAGTCACACAAGTGAAACATATTTAGGTAAAT-AG-AAATTTTGCTATATTTAACCAATCACCATTG-AACTTAATACCATaat-aatta------tacccacttacatttgattagcacttgcaagtttatagcac-c-tttcccataaattatcttatttaaAATGGCACATTAG-CTTTTTAATTATATAAGAATTTCATGAATATGTGGTTTTGTGGAAA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20805733 211 + 189454096 GAGTCACACAAGTGAAACATATTTAGGTAAAT-AG-AAATTTTGCTATATTTAACCAATCACCATTG-AACTTAATACCATaat-aatta------tacccacttacatttgattagcacttgcaagtttatagcac-c-tttcccataaattatcttatttaaAATGGCACATTAG-CTTTTTAATTATATAAGAATTTCATGAATATGTGGTTTTGTGGGAA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16396352 211 + 178775436 GAGTCACACAAGTGAAACATATTTAGGTAAAT-AG-AAATTTTGCTATATTTAACCAATCACCATTG-AACTTAATACCATAAT-AATTA------TACCCACTTACATTTGCTTAGCACTTGCAAGTTTATAGCAC-C-TTTCccataaattatcttatttaaaatggCACATTAG-CTTTTTAATTATATAAGAATCTCATGAATATGTGGTTTTGTGGAAA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19880123 211 - 48547382 GAGTCGCACAAGTGAAACATATTTAGGTAAAT-AG-AAATTTTGCTATATTTAACCAATCACCATTG-AACTTAATACCATaat-aatta------tacccacttacatttgattagcacttgcaagtttatagcac-c-tttcccataaattatcttatttaaAATGGCACATTAT-CTTTTTAATTATATAAGAATTTCATGAATATGTGGTTTTGTGGAAA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21238147 212 - 190850796 GAGTCACACAAGTGAAAAATATTTAGGTAAAT-AGAAAATTTTGCTATGTTTAACCAATCGCCATTG-AACTTAATACTATaat-aatta------tacccacttacatttgattagcacttgcaagtttatagcac-c-tttcttataaattatcttatttaaAATGGCACATTAG-CTTTCTAATTACATAAGTATTACATGAATATGTGGTTTTATAAAAA i calJac3.chr3 C 0 I 1 s mm10.chr5 49224847 189 + 151834684 --GTCACCCAAGTAAGAGCTATTTATGTAAAT-AT-GAACTT-----CATTTAATGAATCACCATTG-AACTTGATGC-------AATTA------TAACC---------TGTTTTGTACTTGAAAACACACAGTGC-CTTTTCCTATAAAC--TCTTATTTTAAAGGGTAGACAGGTTTTTTTAAGGCTTCAACTATTGCACACTTGTGTGGTTTTAGAAAAG i mm10.chr5 C 0 C 0 s canFam3.chr3 3814541 213 - 91889043 GAGTCACCCAAGAGTAGCATTCTTAAGTAAATCAA-AAATTGTGCAGTATTTACCAAATCACCACTGAAACTTGGTACTTTAAT-AATTACATGACTATCGACTAGTATTTGATTAGCACTTGCAAGTTTACAGTGTGt-ttttatataaactattttatttaaaatGGCAC-TTAG--TTTTTAATTAACT-----TTATAGGAACATGTGGGTTTTGAGAAA i canFam3.chr3 C 0 C 0 a score=352308.000000 s hg38.chr4_KI270790v1_alt 114794 128 + 220246 ATCTGAAGTACAAAAGTATATACAT-TTAAAGGTAGAGTTCTCATTAACCTGAGATAATAAAATTGCATTTTCTCCACACCCCTC---------------CAAGGTGTTGGGTGGGTCACAGGTCAGAAAACTTAGCAAGCCAC s panTro4.chr4 21501286 128 + 193495092 ATCTGAAGTACAGAAGTATATACAT-TTAAAGGTAGAGTTCTCATTAACCTGAGATAATAAAATTGCATTTTCTCCACACCCCTC---------------CAAGGTGTTGGGTGGGTCACAGGTCAGAAAACTTAGCAAGCCAC i panTro4.chr4 C 0 C 0 s nomLeu3.chr20 20291285 128 - 85365473 ATCTGAAGTACAGAAGTATATACAT-TTAAAGATAGAGTTCTTATTAACCTGAGATAATAAAATTGCATTTTCTTCGTGCCCCTC---------------CAAGGTGTTGTGTGGGTCACAGGTCAGAAAACTTAGCAAGCCAC i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16756641 127 + 184069350 -ACTGAGGTACAGAAGCATATACAT-TTAAAGGCAGAGTTCTCATTAACCTGAGGTAATAAAATTTCATTTTCTTCACACCCCTC---------------CAAGGTGTTGTGTGGGTCACAGGTCAGAAAACTTAGCAAGCCAC i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20805944 127 + 189454096 -ACTGAGGTACAGAAGCATATACAT-TTAAAGGCAGAGTTCTCATTAACCTGAGGTAATAAAATTTCATTTTCTTCACACCCCTC---------------CAAGGTGTTGTGTGGGTCACAGGTCAGAAAACTTAGCAAGCCAC i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16396563 127 + 178775436 -ACTGAAGTACAGAAACATATACAT-TTAAAGGCAGAGTTCTCATTAACCTGAggtaataaaatttcattttcttcacaccCCTC---------------CAAGGTGTTGCGTGGGTCACAGGTCAGAAAACTCAGCAAGCCAC i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19880334 127 - 48547382 -ATTGAAGTACAGAAGCATATACAT-TTAAAGGCAGAGTTCTCATTAACCTGAGGTAATAAAATTTAATTTTCTTCACACCCCTC---------------CAAGGTGTTGTGTGGGTCACAGGTCAGAAAACTTAGCAAGCCAC i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21238360 124 - 190850796 ATTTGAAGTACATAAGTATATATCT-TTAAAGGTCGGAGTCTCATTAATGTGAGATAATAAAATTTCATTTTCTTCATGCCCCTC---------------CAAGGTGT---GTGAGTCACAGGTCAG-AAACTTAGCAAGCGAT i calJac3.chr3 I 1 I 1 s mm10.chr5 49225036 126 + 151834684 AACTGAAGTATAGACATATGGATAA-AAAAAGGCAGCACTCCATTTGACCTGAGATTATGAAATTTCA-TTTCGCAGTTCCTCTC---------------CAAGGTGTTATGTAGGTCACAGGCCAGAACACTAAGCTTTCAG- i mm10.chr5 C 0 C 0 s canFam3.chr3 3814754 144 - 91889043 ATCTGACATATAGAACTAAATAAATAAAAAAGGAAGAGTTCCAATTGACCGGAGAGAATAAACTTTCATATCTTTAATGCCTCCCTCCCACTGCCCCACTCATGGTGTCCTGTGGACCACAGGTCAGAGAACTGACTGAGCCAG i canFam3.chr3 C 0 C 0 e ponAbe2.chr4 21678770 270 + 198332218 I a score=2645821.000000 s hg38.chr4_KI270790v1_alt 114922 736 + 220246 GAGAGGTAGGCTGA--CAGATGGTTG--GGACTTAGCAGGAGGGTTtgcaaagcagtgcaaagcaatgcaaaagaaaaggtttgcaaagcagtgcaaAAGAAAAGCTTGGGCCTGAAATAGAAAATCTATTTTAAAAGAAGACATATTGTGTCAATAGTTATCACAATGATACTTGAGAGTTTAAGCACCCCAAAAGAATAATAAATCAATGATCAGCTTCATCAGATGTAACTGATTGTATTGCATCACTGAAGCTAATGTACAAGAAAATTATCTGGGGGAATTAGCTTGCCTAGTTTCATGGCTCCTTAAGGAAGCAATAATACTAACTACTCTCAAAGCAACAAGAAGGCTGTCAGCTGTAGGCGCTTTCATGTGAAATGCCCCTATTTGATGCCCTGTTAGAGTCCAATTCACTGCTAGTGTTCTTAGACTAAATAAAGAACAG-TAGCTGAAGGATTTGCTATCATATCATAATGTGTGAAAAATGCTACAGTGTC-CCTTTATGAGATATTAAAACTGTATGTAAATAGAAATAAAACTGCATGATGTCAC------CATCACGAAGCTAAGTTTTAAAAAAT-----GTTCTTCAAATTCAGAAACAACCTGATACCTATAGGGAATTTAGAT--TCTTTTTGACTAG-AAACATCAAGAGAACAACATACCTGTTTAGT------TCGGCACAGTGTACGCTCTATTCTTGGGCGATTTCTACATGAAAATTAGTAATGTCTTGATGTCAGAA s panTro4.chr4 21501414 736 + 193495092 GAGAGGTAGGCTGA--CAGATGGTTG--GGACTTAGCAGGAGGGTTTGCAAAGCAGTGCAAAGCAATGCAAAAGAAAAGGTTTGCAAAGCAGTGCAAAAGAAAAGCTTGGGCCTGAAATAGAAAATCTATTTTAAAAGAAGACATATTGTGTCAATAGTTATCGCAATGATACTTGAGAGTTTAAGCACCCCAAAAGAATAATAAATCAATGATCAGCTTTATCAGATGTAACTGATTGTATTGCATCACTGAAGCTAATGTACAAGAAAATCATCTGGGGGAATTAGCTTGCCTAGTTTCGTGGCTCCTTAAGGAAGCAATAATACTAACTACTCTCAAAGCAACAAGAAGGCTGTCAGCTGTAGGTGCTTTCATGTGAAATGTCCTTATTTGATGCCCTGCTAGAGTCCAATTCACTGCTAGTGTTCTTAGACTAAATAAAGAACAG-TAGCTGAAGGATTTGCTATCATATCATAATGTGTGAAAAATGCTACAGTGTC-CCTTTATGAGATATTAAAACTGCATGTAAATAGAAATAAAACTGCATGATGTCAC------CATCATGAAGCTAATTTTTAAAAAAT-----GTTCTTCAAATTCAGAAACAACTTGATACCTATAGGGAATTTAGAT--TCTTTTTGACTGG-AAACATCAAGAGAACAACATACCTGTTTAGG------ACAGCACAGTGTACGCTCTATTCTTGGGCGATTTCTACATGAAAATTAGTAATGTCTTGATGTCAGAA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21679040 736 + 198332218 GAGAGGTAGGCTGA--CAGATGGTTG--GGACTTAGCAGGAGGGTTTgcaaagcagtgcaaagcaatgcaaaagaaaaggtttgcaaagcaatgcaaaacaaaAGCTTGGGCCTGAAATAGAGAATCTATTTTAAAAGAAGACATATTGTGTCAATAGTTATCGCAATGATACTTGAGAGTTTAAGCACCCCAAAAGAATAATAAATCAATGATCAGCTTTATCAGATGTAACTGATTGTATTGCATCACTGAAGCTAATGTACAAGAAAATTATCCAGGGGAATTAGCTTGCCTAGTTTCATGGCTCCTTAAGGAAGCAATAATACTAACTACTCTCAAAGCAACAAGAAGGCTGTCAGCTGTAGGTGCTTTCATGTGAAATGCCCTTATTTGATGTCCTGCTAGAGTCCAATTCACTGCTAGTGTCCTTAGACTAAATAAAGAACAG-TAGCTGAAGGATTTGCTATCATATCATAATGTGTGAAAAATGCTACAGTGTC-CCTTTATGAGATATTAAAACTGCATGTAAATAGAAATAAAACTGCATGATGTCAC------CATCATGAAGCTAATTTTTAAAAAGT-----GTTCTTCAAATTCAGAAACAACTGGATACCTATAGGGAATTTAGAT--TCTTTTTGACTGG-AAACATCAAGAGAACAACACACCTGTTTAGT------TCGGCACAGTGTATGCTCTATTCTTGGGTGATTTCTACATGAAAATTAGTAATGTCTTGATGTCAGAA i ponAbe2.chr4 I 270 C 0 s nomLeu3.chr20 20291413 704 - 85365473 GAGAGGTAGGCTGA--CAGACGGTTG--GGACTTAGTAGGAGGGT--------------------------------AGGTTTGCAAAGCAGTGCAAAAGAAAAGCTTGGGCCTGAAATAGAGAATCTATTTTAAAGGAAGACATATTGTGTCAATAGTTATTGCAATGAGACTTGAGAGTTTAAGCACCCCAAGAGAATAATAAATCAATGATCAGCTTTATCAGATGTAACTGATTGTATTGCATCACTGAAGCTAATGTACAAGAAAATTATCTGGGGGAATTAGCTTGCCTAGTTTCATGCCTCCTTAAGGAAGCAATAATACTAACTACTCTCAAAGCAACAAGAAGGCTGTCAGCTGTAGGTGCTTTCATGTGAAATGCCCTTATTTGATGCCCTGCTAGAGTGCAGTTCACTGCTAGTGTTCTTAGACTAAATAAAGAACAG-TAGCTGAAGGATTTGCTATCATGTCATAATGTGTGAAAAATGCTACAGTGTC-CCTTTATGAGATATTAAAACTGCATGCAAATAGAAATAAAACTGCATGATGCCAC------CATCATGAAGATAATTTTTTAAAAAT-----GTTCTTCAAATTCAGAAACAGCTTGATACCTATAGGGAATTTAGAT--TCTTTTTGACTGG-AAACATCAAGAGAACAACATACCTGTTTACT------TTGGCACACTGTACGCTCTATTCTTGGGCAATTTCTACATGAAAATTAGTAATGTCTTGATGTCAGAA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16756768 704 + 184069350 GAGAGGTAGGTTGA--CAGATGGTTG--GGACTTAGCAGGAGGGT--------------------------------AGGTCTGTAAAGCAGTGCAAAAGAAAAGCTTGGTCCTGAAATAGAGAATCTATTTTAAAGGAAGACATATTGTGTCAATAGTTATCACAATGAGACTTGAGAGTTTAAGCAGCCCAAAAGAATAATAAGTCAATGATCAGCTTTATTAGATGTAACTGATTGTATTGCATCACTGAAGCTAATGTACAAGAAAATTATCTGGGGGAATTAGCTTGCCTAGTTTCATGGCTCTTTAAAGAAGCAATAATACTAACTACTCTCAAAGCAACCAGAAGGCTGTCAGCTGTAGGTGCTTTCTTGTGAAATGTCCTTATTTGATGCCCTGCTAGAGTCCAATTCACTGCTAGTGTTTTTAGCCTAAATAAAGAACAG-TAGCTGAAGGATTTGCTAGCATGTCATAATGTGTGAAAAATGCTACAGTGTC-CCTTTATGAGATATTAGAACTGCATGTAAATAGATATAAAACTGCATGATGCCAC------CATCATGAAGCTAATTTTTAAAAAAT-----ATTCTTCAAATTCAGAAACAACTTGATACCTATAGGGAATTTAGAT--TCTTTTTGACTGG-AAACACCAAGAGAACAGCACACCTGTTTAGT------TCAGTATGGTGTATGCTCTATTCTTGGGCAATTTCTACATGAAAATTAGTAATGTCTTGACGTCAGAA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20806071 704 + 189454096 GAGAGGTAGGTTGA--CAGATGGTTG--GGACTTAGCAGGAGGGT--------------------------------AGGTCTGTAAAGCAGTGCAAAAGAAAAGCTTGGTCCTGAAATAGAGAATCTATTTTAAAGGAAGACATATTGTGTCAATAGTTATCACAATGAGACTTGAGAGTTTAAGCACCCCAAAAGAATAATAAGTCAATGATCAGCTTTATTAGATGTAACTGATTGTATTGCATCACTGAAGCTAATGTACAAGAAAATTATCTGGGGGAATTAGCTTGCCTAGTTTCATGGCTCTTTAAGGAAGCAATAATACTAACTACTCTCAAAGCAACCAGAAGGCTGTCAGCTGTAGGTGCTTTCTTGTGAAATGTCCTTATTTGATGCCCTGCTAGAGTCCAATTCACTGCTAGTGTTTTTAGCCTAAATAAAGAACAG-TAGCTGAAGGATTTGCTAGCATGTCATAATGTGTGAAAAATGCTACAGTGTC-CCTTTATGAGATATTAGAACTGCATGTAAATAGATATAAAACTGCATGATGTCAC------CATCATGAAGCTAATTTTTAAAAAAT-----ATTCTTCAAATTCAGAAACAACTTGATACCTATAGGGAATTTAGAT--TCTTTTTGACTGG-AAACACCAAGAGAACAGCACACCTGTTTAGT------TCAGTATGGTGTATGCTCTATTCTTGGGCAATTTCTACATGAAAATTAGTAATGTCTTGACGTCAGAA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16396690 704 + 178775436 GAGAGGTAGGTTGA--CAGATGGTTG--GGACTTAGCAGGAGGGT--------------------------------AGGTCTGTAAAGCAGTGCAAAAGAAAAGCTTGGTCCTGAAATAGAGAATCTATTTTAAAGGAAGACATATTGTGTCAATAGTTTTCACAATGAGACTTGAGAGTTTAAGCACCCCAAAAGAATAATAAGTCAATGATCAGCTTTATTAGATGTAACTGATTGTATTGCATCACTGAAGCTAATGTACAAGAAAATTATCTGGGGGAATTAGCTTGCCTATTTTCATGGCTCTTTAAGGAAGCAATAATACTAACTACTCTCAAAGCAACCAGAAGGCTGTCAGCTGTAGGTGCTTTCTTGTGAAATGTCCTTATTTGATGCCCTGCTAGAGTCCAATTCACTGCTAGTGTTTTTAGCCTAAATAAAGAACAG-TAGCTGAAGGAGTTGCTAGCATGTCATAATGTGTGAAAAATGCTACAGTGTC-CCTTTATGAGATATTAGAACTGCATGTAAATAGATATAAAACTGCATGATGTCAC------CATCAtgaagctaatttttaaaaaat-----attcttcaaattcAGAAACAACTTGATACCTATAGGGAATTTAGAT--TCTTTTTGACTGG-AAACACCAAGAGAACAGCACACCTGTTTAGT------TCAGTATGGTGTATGCTCTATTCTTGGGCAATTTCTACATGAAAATTAGTAATGTCTTGACGTCAGaa i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19880461 704 - 48547382 GAGAGGTAGGCTGA--CAGATGGTTG--GGACTTAGCAGGAGGGT--------------------------------AGGTTTGTAAAGCAGTGAAAAAGAAAAGCTTGGTCCTGAAATAGAGAATCTATTTTAAAGGAAGACATATTGTGTCAATAGTTATCACAATGAGACTTGAGAGTTTAAGCACCCCAAAAGAATAATAAGTTAATGATCAGCTTTATCAGATGTAACTGATTGTATTGCATCACTGAAGCTAATGTACAAGAAAATTATCTGGGGGAATTAGCTTGCCTAGTTTCATGGCTCTTTAAGGAAGCAATAATACTAACTACTCTCAAAGTAACCAGAAGGCTGTCAGCTGTAGGTGCTTTCATGTGAAATGTCCTTATTTGATGCCCTGCAAGAGTCCAATTCACTGCTAGTGTTTTTAGCCTAAATAAAGAACAG-TAGCTGAAGGATTTGCTATCATGTCATAATGTGTGAAAAATGCTACAGTGTC-CCTTTATGAGATATTAGAACTGCATGTAAATAGATATAAAACTGCATGATGTCAC------CATCATGAAGCTAATTTTTAAAAAAT-----ATTCTTCAAATTCAGAAACAACTTGATACCTATAGGGAATTTAGAT--TCTTTTTGACTGG-AAACACCAAGAGAACAGCATACCTGTTTAGT------TCAGCACGGTGTATGCTCTATTCTTGGGCAATTTCTACATGAAAATTAGTAAGGTCTTGACATCAGAA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21238485 681 - 190850796 AGAAGGCAGGCTGA--TAGATGATTG--GGACTTAGCAGGAGGGT--------------------------------AGATTTGCAAAGCAGTGCAAAAGAAAAGCCTGGGCCTGAAATAGAGAATCTATTTTAAAGGAAGACAAATTGTGTCAATAGTTATCACAATGAGACTTAGGAGTTTAAGCACCCCAAAAGAATAAGAAATCAATGATCAGCTTTATCA-ATGTAACTAATTGTACTGCATCACTGAAGCTAATGTACAAGAAAATTATCTGGGGGAAATAGCTTGCCTAGTTTCATCGCTCCTTAAGGAAGCAATAATACTAACTAGTCTCAAAGCAGCAAGAAGACTGTCAGTTGTGGGTGCTTTCATGTGAAATGTCCTTATTTGATGTCCTGCTAGAGTCCAATTCACTGCTAGTGTTCTTAGCCTAAAT-AAGAACAG-TAGCTGAAGGATTTGCTCTCATGTCATAATGTGTGAAAAATGCTAAGATGTC-CCTTTATGAGACATTAAAATTGCATGTAAATAGTGGT-------------------------ATCATGAGGCTAATTTTTTTAAA-T-----GTTCTTTAAATTCAGAACCAACTTGACAACTGCAGGGAATTGAGAT--TCTTTTTGACTGG-AAACACTAGGAGAACAACATGCCTCTTTTGT------CTGGCACAGTGCATGCTCTATTCTTGGGCAA-TTCTACAGGAAAAGTAGTAATGTCTTGATGTCAGAA i calJac3.chr3 I 1 C 0 s mm10.chr5 49225162 689 + 151834684 AAGAGGCAAGCTGAGTGAAATAGAT---GGATTTAGGAAGAGGAT--------------------------------AGGTCCTCAGAGTA-CACAAAAGAAAAGCCTGGTCTAAAGTCCAAGGTCCTTTTTTAAAGGAAGACATATTTTGTCATTGGTTGCCACCATGAGATTTGAGATTTTAAACATCCCCAAAGAAAAATAAATCAATGATTAGCTCCATCTGATATAACTGATTAGATTGCACCATGGAGGCTAATGTACAAGAAAATTAGCTGCGGGAATTAACTTGCCTCTTTTCATGGCTCCTTAAGGAAGCAATAATACTAACTATTCTCAAAGCAACAGGAAGACTGTCAGCTGTAGGCAATTTAATATCAAATGTCCTTA-TTAATGTCATTACAGAGTCCAATTCATGATTAGTGTTCCCTGCTTAAATCTACCATGGACCCCTAAACAGGTTACCATGCTAACTTAATTACCATAAAATGCTAATATGTT-TCTTTATGAAACATTAAATGTATATGTTGATAGTGG-------------------------CATCATGAAGATAACTCTTGAAAA-------AGTCTTAAAAATTTAAACCTACCTAGTGACTTTAGAGAACATTAGT--TCTTTCAGATAGGAAAATACTCCGAGAGCAATGTTCCTTCCTTGCTCTGCGTCAGTGTGGTGCATGCTGTACTCCTGTGCGGTTTCAATACGACTGTTACAAATA-CTTAACAGCAGAA i mm10.chr5 C 0 I 41 s canFam3.chr3 3814898 673 - 91889043 GAGA-----GCTAA--CAGATGGGAGAAGGATTTATCAGGAAGGT--------------------------------TGGTTCCTCAAGGAGCAGAGATGAGTAGCCTGAGCTGGAACTAGGGAAGTTATTTTAAAGAAAGGCATATTGTATCAACAGTTGTCACAATGAGACTTGGGAGCGTAAGCACCCCGAAAGAATAATAAATCAATGATCAACTCTATC-GATGTAATTGATTATATTGCATCACTGAGGCTAATGTACAAGGAAATTATCTGGGGGAATTAACTAACCTACTTTTATGGCTCCTTAAGGGAGCAATAATACTAACTACTCTCAAAATAACAAGAAGGCTGTTGGCTGTAGGCACTTCAATGTGAAATGTCCTTATTTGATGCCCTGCCAGAGCCCAGTTCACTGCGAGTATTCTTAGCCTGAATATGCCACAG-CACTACAGGGCTTTATTA-----TCTTAATTAGGGGAAAATGCTAAGATGTCATTTTTATGAAACATTAAAACTGAATGCAAAT-------------TATGACATCACGTGTGACTTAAAAAAAAAAAAGCACAAAAAACACCAAGCCCTTTAAATTTGTAAACAACCAGACACCTATAGAGAATTTAGAGGACATTTCTGTTCTG-A-----------------------GTTATGT------TTGGCACAGCACACACTATGTTCCTGGGCAGTTCCTAGTTGAGAGTTACTAATGTTCTGATGTTAGCA i canFam3.chr3 C 0 C 0 a score=39999.000000 s hg38.chr4_KI270790v1_alt 115658 16 + 220246 AACCATATTTCCttt----t s panTro4.chr4 21502150 20 + 193495092 AACCATATTTCCTTTCTTTT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21679776 20 + 198332218 AACCATATTTCCtttctttt i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20292117 20 - 85365473 AAACATAATTCCtttctttt i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16757472 20 + 184069350 AAACATATTTCCTTTCTCTT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20806775 20 + 189454096 AAACATAtttcctttctctt i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16397394 20 + 178775436 aaacatatttcctttctttt i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19881165 20 - 48547382 AAACATATCTCCTTTCGTTT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21239166 14 - 190850796 AAATATAtttcctt------ i calJac3.chr3 C 0 C 0 s canFam3.chr3 3815571 17 - 91889043 AAATGCAGTTTTCTTTT--- i canFam3.chr3 C 0 I 2 e mm10.chr5 49225851 41 + 151834684 I a score=800391.000000 s hg38.chr4_KI270790v1_alt 115674 346 + 220246 ctttttctttcttt---------------ttttttttttttttttgagacagggtcttgctctgtcatccaggctggagtgcagtggtgcaatcatggctcactgtaggcttaacctcctggtctcaaatgatcctcccacctaatcctctctactagctgagaccataggcatggaccaccacagctggc----------taatttttttttttttttttttgactttttgtagagacgaggtctagctatgtttcccaggctgttctcaaactcctgggctcaagtgatccttccaccttggcctcccaaaatactgggattacaggtgtgagccaccatacccggccAACATATTTACTTTAAAAAAG s panTro4.chr4 21502170 346 + 193495092 CTTTTTCtttcttt----------cttttttttttttttttttttgagacagggtcttgctctgtcatccaggctggagtgcagtggtgcaatcatggctcactgtaggtttaacctcctggtctcaaacgatcctcccacctaatcctctctagtagctgagaccacaggcacgcaccaccacagctggc----------ta-----ttttttttttttttttactttttgtagaaacgaggtctagctatgttttccaggctgttctcaaactcctgggctcaagtgatccttccaccttggcctcccaaaatactgggattacaggtgtgagccaccacatccagccAACATATTTACTTTAAAAAAG i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21679796 334 + 198332218 ctttttctttcttt-----------------------ttttttttgagacagggtcttgctctgtcatccaggctggagtgcagtggtgcagtcatggctcactgtagccttaacctcctggtctcaagcgatcctcccacctaatcctctctagtagctgagaccacaggcatgcaccaccatagctgac----------taa----tttttttttttttttgactttttgtagagacgaggactagctatgtttcccaggctgttctcaaactcctgggctcaagtgatccttccaccttggcctcccaaaatactgggattacaggtgtgagccaccacagccggccAACATATTTACTTTAAAAAAA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20292137 360 - 85365473 ctttttcttttttcttttttttttcttttctttttctttttttctgagacagggtcttgctctgtcatccaggctggagtgcagtggtgcagtcatggctcactgtagcctcaatctcctggtctcaagcgctcctcccacctaatcctccctagtatctgagaccacaggcatgcaccaccacagctggc----------taattt-ttttttttttttttttactttttgtagagacgaagtctagctatgtttcccaggctgttctcaaactcctgggctcaagtgatccttccaccttggcctcccaaaatactgggattacaggtgtgagccaccacacccggccAACATATTTACTTCAAAAAAG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16757492 296 + 184069350 Cttttctttc---------------tttcttttttttttttttttgagacagggtcttgctctgtcatccaggctggagtgcagtggtgcaatcatagctcactgtagcctcaacctcctggtctcaagcgatcctcccacctaatcatctgaagtagctaagaccacagacatgcactaccacagctggc-------------ttt-ttttttttttttttttactttttgtagagatgaggtctagctatgttgcccaggctgttctcaaactcctaggctcaagtgatcctttcgctttggcctcccaaaat------ATTACAGgtg---------------------------------------- i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20806795 306 + 189454096 cttttctttct--------ttttttttttttttttttttttttttgaaacagggtcttgctctgtcatccaggctggagtgcagtggtgcaatcatagctcactgtagcctcaacctcctggtctcaagcgatcctcccacctaatcctctgaagtagctaagaccacagacacgcactaccacagctggc----------tttttt-ttttttttttttttttactttttgtagagatgaggtctagctatgttgcccaggctgttctcaaactcctaggctcaagtgatcctttcgctttggcctcccaaaat------ATTACAGgtg---------------------------------------- i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16397414 298 + 178775436 cttttctttc-------------------tttttttttttttcttgagacagggtcttgctctgtcatccaggctggagtgcagtggtgcaatcatagctcactgtagcctcaacctcctggtctcaagcgatcctcccacctaatcCTCTgaagtagctaagaccacagacACGCACTATCAcagctggt-------ctttttttt-tttttttttttttttttacttttgtagagatgaggtctagctatgttgcccaggctgttctcaaactcctaggctcaagtgatcctttcgctttggcctcccaaaat------attacaggtg---------------------------------------- i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19881185 321 - 48547382 TCTTTCTTTCTTtt---tcttttttttttcttcttttttttttttgagacagggtcttgctctgtcatccaggctggagtgcagtggtgcaatcatggctcactgtagcctcaacctcctggtctcaagcgatcctcccacctaatcctctgaagtagctgagaccacagacatgcaccaccacagctggctaattttttttttttt-ttttttttttttttttactttttgtagagatgaggtctagctatgttgcccaggctgttctcaaactcctgggctcaagtgatcctttcactttggcctcccaaaat------ATTACAGgtg---------------------------------------- i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21239180 331 - 190850796 -----------------------------ttcttttttttttcttgagatagaatctagctctgtcacccagactggagtgcagtggggcaatcatgactcactgcagcctcaatctcctggtttcaagcgatcctcctacctaatcctctctagtagctgagaccacaagcatgcagcacaacagcaggc----------taatat-tttttcttttctttttactttttgtaaagacaaggtctagctgtgttgcccaggctggtctcaaacatgcaggctcaagtgatcctcccgccttggcctcccaaaatactggtattaccgctgcgagccaccacacccagccAACATATTTACTTCAAAAATG i calJac3.chr3 C 0 C 0 e mm10.chr5 49225851 41 + 151834684 I e canFam3.chr3 3815588 2 - 91889043 I a score=628742.000000 s hg38.chr4_KI270790v1_alt 116020 292 + 220246 CCTTCAgcgcggtggctcatgcctgtaatcccagcactttgggaggccaaggtgggtggatcacgaggtcaagagattgagaccatcctgcccaacatggtaaaaccccatctctactaaaaatacaaaaattagctgggcctggtggcacatgcctgtcatcctagctactgtggaggc------agaagaatcgcttggacctggaaggtggaggttgcagtgagctgagatcctgccactgaactccagcctggcaacagagggagattccatcaa----------------aaaaaaaaaaaagaaaaaT s panTro4.chr4 21502516 293 + 193495092 CCTTCAgcgcggtggctcatgcctgtaatcccagcactttgggaggccaaggtgggtggatcacaaggtcaagagatcaagaccatcctgcccaacatggtaaaaccccgtctctactaaaaatacaaaaattagctgggagtggtggcacgcgcctgtcgtcctagctactctggaggctgaggcagaagaatcgcttgaacctggaaggtggaggttgcagtgagctgagatcccgccactgaactccagcctggcaacagagggagattccat---------------------aaaaaaaaaaaaaaaaT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21680130 295 + 198332218 CCTTCAgcacagtggctcatgcctgtaatcccagcactttgggaggccacggtgggtggatcacaaggtcaagagattgagaccatcctgcccaacatggtaaaaccccgtctctactaaaaatacaaaaattagctgggagtggtggcacacgcctgtcatcctagctattctggaggctgaggcagaagaatcgcttgaacctggaaggtggagattgcattgagctgagatcccgccactgaactccagcctggcaacagagggagattccatca-------------------aaaaaaaaaaaaaaaaT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20292497 295 - 85365473 CCTTCAgcacagtggctcatgcctgtaatcccagcactttgagaggccaaggtgggtggatcacaaggtcaagagatggagaccatcctgcccaacatggtaaaaccctgtctgtactaaaaatacaaaaattagctgggcgtggtgacacacgcctgtcgtcctagctactctggaggctgaggcagaagaatcgcttgaacctggaaggtggaggttgcagtgagctgagatcctgccactgaactccagcctggcaacagagggagattccataa-------------------aaaaaagaaaaaaaaaT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16757788 276 + 184069350 -----------gtggctcatgcctgtaatcccagcactt--gaaggccaa-------ggatcacaaggttaagagatcaagaccatcctgcccaacatggtgaaaccccgtctctactaaaaatacaaaaattagctgggcgtggtggcacatgcctgtcgtcctagctactctggaggcttagacaggagaatcgcttgaacctggaaggtggaggttgcagtgagctgagatcataccactgaactccagcctggcgacagagggatattctgtctt------------------aaaaaaaaaaaaaaaaa i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20807101 277 + 189454096 -----------gtggctcatgcctgtaatcccagcactt-ggaaggccaa-------ggatcacaaggttaagagatcaagaccatcctgcccaacatggtgaaaccccgtctctactaaaaatacaaaaattagctgggcgtggtggcacatgcctgtcgtcctagctactctggaggcttagacaggagaatcgcttgaacctggaaggtggaggttgcagtgagctgagatcataccactgaactccagcctggcgacagagggatattctgtctt------------------aaaaaaaaaaaaaaaaT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16397712 295 + 178775436 -----------gtggctcatgcctgtaatcccagcactt-ggaaggccaa-------ggatcacaaggttaagagatcaagaccatcctgcccaacatggtgaaaccccgtctttactaaaaatacaaaaattagctgggcgtggtggcacatgcctgtcgtcctagctactctggaggcttagacaggagaatcgcttgaacctggaaggtggaggttgcagtgagctgagatcataccactgaactccagcctggcgacagagggatattctgtctttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaat i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19881506 300 - 48547382 -----------gtggctcatgcctgtaatcccagcactt-ggaaggccaaggcaggtggatcacaaggtcaagagatcaagaccatccttcccaacatggtgaaaccccgtctctactaaaaatacaaaaattagctgggtgtggtggcacatgcctgtcgtcctagctactctggaggcttagacaggagaattgcttgaacctggaaggtggaggttgcagtgagctgagatcatacaactgaactccagcctggtgacagagggatattctgtctt--aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa i chlSab2.chr27 C 0 C 0 e mm10.chr5 49225851 41 + 151834684 I e calJac3.chr3 21239511 0 - 190850796 C e canFam3.chr3 3815588 2 - 91889043 I a score=51836.000000 s hg38.chr4_KI270790v1_alt 116312 19 + 220246 CCTTCAGAATCCCATTTTC s panTro4.chr4 21502809 19 + 193495092 CCTTCAAAATCCCATTTTC i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21680425 19 + 198332218 CCTTCAAAATCCCATTTTC i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20292792 19 - 85365473 CCTTCAAAATCCTATTTTC i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16758064 19 + 184069350 CTTTCAAAATCTCATTTTC i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20807378 19 + 189454096 CTTTCAAAATCTCATTTTC i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16398007 19 + 178775436 ctttcaaaatctcattttc i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19881806 19 - 48547382 CTTTCAAAATCTCATTTTC i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21239511 19 - 190850796 CCCTCAAAACCCCATTTGA i calJac3.chr3 C 0 C 0 e mm10.chr5 49225851 41 + 151834684 I e canFam3.chr3 3815588 2 - 91889043 I a score=408234.000000 s hg38.chr4_KI270790v1_alt 116331 131 + 220246 TTCTCTATCATCACCATACTCATGTTCATAT--TATCTAAGTCTTCATAAATTATATTGATTACTTACTCTGC--------------TTTTTTCTCTTTCCCCGGACCCTGCTGGTTTAGTTTCCAG-CATCAAGTGTTAGGCTTATT s panTro4.chr4 21502828 131 + 193495092 CTCTCTATCATCACCATACTCATGTTCATAT--TATCTAAGACTTCACAAATTATATTGATTACTTACTCTGC--------------TTTTTTCTCTTTCCCCGGACCCTGTTAGTTTAGTTTCCAG-CATCAAGTGTTAGGCTTATT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21680444 131 + 198332218 TTCCCTATCATCACCATACTCGTGTTCATAT--TATCTAAGTCTTCCTAAATTATATTGATTACTTACTCTGC--------------TTTTTTCTCTTTCCCCGGACCCTGCTGGTTTCGTTTCCAG-CATCAAGTGTTAGGCTTATT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20292811 131 - 85365473 TTCTCTATCATCACCATACTCATGTTCATAT--TATCTAAGTCTTCATAAATTATATTGATTACTTATTCTGC--------------TTTTTTCTCTTTCCCCAGACCCTGCTGGTTTAGTTTCCAG-CATCAAGTGTTAGGCTTATT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16758083 133 + 184069350 TTCTCTATCATCACCATACTCATGTTGATAT--TATCTAAGTCTTCATAAATTATATTGATTACTTACTCTGCT-------------TTTTTTCTCTTTCCCTGGACCCTGTTGGTTTAGTTTCCAGCCATCAAATGTTAGCCTTATT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20807397 133 + 189454096 TTCTCTATCATCACCATACTCATGTTGATAT--TATCTAAGTCTTCATAAATTATATTGATTACTTACTCTGCT-------------TTTTTTCTCTTTCCCTGGACCCTGTTGGTTTAGTTTCCAGCCATCAAATGTTAGCCTTATT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16398026 133 + 178775436 ttctctatcaTCACCATACTCATGTTGATAT--TATCTAAGTCTTCATAAATTATACTGATTACTTactctgct-------------ttttttctctttccctggaCCCTGTTGGTTTAGTTTCCAGCCATCAAATGTTAGCCTTATT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19881825 132 - 48547382 TTCTCTATCATCACCATACTCATGTTCATAT--TATCTAAGTCTTCATAAATTATATTGATTACTTACTCTGC--------------TTTTTTCTCTTTCCCTGGACTCTGTTGGTTTAGTTTCTAGCCATCAAATGTTAGCCTTATT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21239530 132 - 190850796 TTCTCTGTCATCACCACACTCATGCTCATAT--TATCTAAGACTTCATAATTTACATTGATTACTGACTCTGC--------------TTTTTTTCTTTTCCCAGAACCTTGTTAGTTTAGTTTCCAGTCATCAAATGTTAGGCTTATT i calJac3.chr3 C 0 C 0 s mm10.chr5 49225892 143 + 151834684 TTCTCTACCATCACCATATTCATCCACATATAACATCTACTTGTTTAC----CATACTGATTACTTACTTTGCTCAGGATTTGAGTATATATTTTCCATCTCATGACTGCTACGACTTTTTTAAAAG-CATCAAATGTAAGGCTCTTT i mm10.chr5 I 41 I 706 e canFam3.chr3 3815588 2 - 91889043 I a score=86893.000000 s hg38.chr4_KI270790v1_alt 116462 31 + 220246 GCCATCAATTCCTTAGTGCTTTTCTCAAACC s panTro4.chr4 21502959 31 + 193495092 GCCATCAATTCCTTAGTGCTTTTCTCAAACC i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21680575 31 + 198332218 GCCATCGATTCCTTAGTGCTTTTCTCAAACC i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20292942 31 - 85365473 GCCATCAATTCCTTAGTGCTTTTCTCAAACC i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16758216 30 + 184069350 GCCATTAATT-CTTAGTGCTTTTCTCAAACT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20807530 30 + 189454096 GCCATTAGTT-CTTAGTGCTTTTCTCAAACT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16398159 30 + 178775436 GCCATTAATT-CTTAGTGCTTTTCTCAAACT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19881957 31 - 48547382 GCCATCAATTCCTTAGTGCTTTTCTCAAACT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21239662 31 - 190850796 GCCATCAATTCCTTAGTGCTTTTCTCGAATC i calJac3.chr3 C 0 C 0 e mm10.chr5 49226035 706 + 151834684 I e canFam3.chr3 3815588 2 - 91889043 I a score=642978.000000 s hg38.chr4_KI270790v1_alt 116493 211 + 220246 TCTCTTCGCTGCAGATACGATGATTGAAAACAAACACACTAACAGATATGGCCATGAAACTTTCCTGTTTAAAATCCTTCAATGATGCCCTCTTCATCCAATG-AACAGTTGTTTCCTTAATAGCCTCTAGACGCCCGCAAGAAAGAGCCCAAACTCCTTTGCATA--GCATGAAAGATGTTT-CTGTTTTTTGCCTAATGTATTGAGTAAcatg s panTro4.chr4 21502990 211 + 193495092 TCTCTTCGCTGCAGACACGATGATTGAAAACAGACACACTAACAGATATGGCCATGAAACTTTCCTGTTTAAAATCCTTCAATGATGCCCTCTTCATCCAATG-AACAGTTGTTTCCTTACTAGCCTCTAGACACCTGCAAGAAAGAGCCCAAACTCCTTGGCATA--GCATGAAAGATGTTT-CTGTTTTTTGCCTAATGTATTGAGTAAcatg i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21680606 211 + 198332218 TCTCTTTGCTGCAGACATGATGATTGAAAACAAACACACTAACAGATATGGCCATGAAACTTTCCTGTTTAAAATCCTTCAATGATGCCCTCTTCATCCAATG-AACGGTTGTTTCCTTACTAGCCTCTAGACGCCTGCAAGAAAGAGCCCAAACTCCTTGGCATA--GCATGAAAGATGTTT-CTGTTTTTTGCCTAATGTATTGAGTAACATG i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20292973 210 - 85365473 TCTCTTTGCTGCAGACACGATGATTGAAAACAAACACACTAACAGATATGGCCATGAAACTTTCCTGTTTAAAATCCTTCAATGATGCCCTCTTCATCCAATG-AACAGTTGTTTGCTTACTAGCTTCTAGACGCCTGCAAGAAAGAGCCCAAACTCCTTGGCATA--ACATGAAAGATGTTT-CTGTTTTTTGCCTAAAG-ACGGAGTAACATG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16758246 211 + 184069350 TCTCTTCGTTGCAGACATGATGATTGAAAACAAACACAGTAACAGATATGGCCATGAAACTTTCCTGCTTAAAATCCTTCAATGATGCCCTTTTCATCCAATG-AACAGTTGTTTCCTTACTAGCCTCTAGACACCTGCAAGAAAGAGCCCAATCTCCTTGGCATA--GCATGAAAGATGTTt-ctggtttttgcctgctgtattgagtaacatc i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20807560 211 + 189454096 TCTCTTCGTTGCAGACATGATGATTGAAAACAAACACAGTAACAGATATGGCCATGAAACTTTCCTGCTTAAAATCCTTCAATGATGCCCTTTTCATCCAATG-AACAGTTGTTTCCTTACTAGCCTCTAGACACCTGCAAGAAAGAGCCCAATCTCCTTGGCATA--GCATGAAAGATGTTT-CTGTTTTTTGCCTGCTGTATTGAGTAAcatc i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16398189 211 + 178775436 TCTCTTCGCTGCAGACATGATGATTGAAAACAAACACAGTAACAGATATGGCCATGAAACtttcctgcttaaaatccttcaatgaTGCCCTTTTCATCCAATG-AACAGTTGTTTCCTTACTAGCCTCTAGACACCTGCAAGAAAGAGCCCAATCTACTTGGCATA--GCATGAaagatgttt-ctgttttttgcctGCTGTATTGAGTAACATC i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19881988 211 - 48547382 TCTCTTCACTGCAGACGTGATGATTGAAAACAAACACACTAACAGATATGGCCATGAAACTTTCCTGTTTAAAATCCTTCAATGATGCCCTTTTCATCCAATG-AACAGTTGTTTCCTTACTAGCCTCTAGACACCTGCAAGAAGGAGCCCAATCTCCTTGGCATA--GCATGAAAGATGTTT-CTGTTTTTTGCCTGCTGTATTGAGTAAcatc i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21239693 212 - 190850796 TCTCTTCACTGCAGACATGATGACTGAAAACAAACACACTAACAGATATGGACATGAAACTTCCCTGTTCAAAATCCTTCAATGATGCCTTCTTCATTCAACG-AACAGTTGTTTCTTTACTAGGCTCCAGACCCTTGCAAGAAAGAGCCCAAACTTCTCGGCACA--GCATGAAAGATGTTTGCAGTTTTTTGCCTAATGTGTTGAGTAACAtt i calJac3.chr3 C 0 I 313 s mm10.chr5 49226741 165 + 151834684 TCTTTCTATTGCATTCATTATGATT-----CAAGAACACAAACAGA-----CTGTATTTTTTTCCAATATACATTCCCTCAATTGCATCCCCCTAATTTATTGAAACAGTCTGTTTTTCGTTGG------------TGCTA--------------TACTTTTCATAGTGCATGAAAGCCTTTT-CTGATTTTTAGC----------AATCAC--- i mm10.chr5 I 706 C 0 e canFam3.chr3 3815588 2 - 91889043 I a score=2699607.000000 s hg38.chr4_KI270790v1_alt 116704 874 + 220246 ttttgctactctcctcacacctacttttcagaaataacaaatcccatgttgtgtcttgaacaccata-tggtacttcccattcccatttactttcacacgccccttgcaccttccgaaatgtcatcgctctctagttcacctggctactttct------------------acatagtgttattctgtgacgctt-cctcactatattcggtaagg-----aaaatgtactacctctgtatcttattattgcttctcttgttgc-----tcacaagttatatatgaatttgttacatgtttatttctcctatcaacacatgagattcttgaaggcatgaactttgtcatatttatcttcctatctccaaaacctactataaaacatgctt-----cataataaacactcaatgagtatatgtggtttgaatgaatGTACTTAAGAGAAAAAAAGATAGTAATATAAGCCATGCTTTTATTTTAATTAATGACA-----------------------------TTTTCT----AGTTTTCCA------------------------------------------------------------------------------------------------------------------------------------TTTATTCAAATAGTAAAATTTTACTAAAAATGGTAG-----TTATGTAAACATTAGCTAAAGATGACCTATTGGACAGGCAATTTGCAAA-------TAAATTATTTTCTTCTTAGATAT--GAGGTAAATCAATAGTAACTTAGCAATGAAGATATAAACTTAGACATTATACCTATATTCCAGTTGGAAAGGTGGATGGAGTTAATGCTATAAACACTTCAAAAAATG-TATTTCTATCCTCCTAATATGGACATCTCTAATAGTTTCTGCAACTCCACGGTATAAAAACCCTCTGCTATGTCCTCTCAAAACACCTCCTCAATCTGGGTCAGGCCTGCCTTTCCTCAATTCAATTCTATCTTTATGTGCCCATATTCTGGACCAATTGTGCTCAATGGCATCTATGCTTTATT s panTro4.chr4 21503201 879 + 193495092 ttttgctactctcctcacacatacttttcagaaataacaaatcccatgttgtgtcttgaacacaata-tggtacttcccattcccatttattttcacacgtcccttgcaccttccgaaatgtcatcgctctctagttcacctggctactttct------------------acatagtgttattctgtgacgctt-cctcactatattcagtaagg-----aaaatgtactacctctgtatcttattatttcttctcttgttgc-----tcacaagttatatattaatttgttacatgtttatttctcctatcaacacatgagattcttgaaggcatgaactttgtcatatttatcttcctatctccaaaacctactataaaatatgctt-----cataataaacactcagtaagtatatgtggtttgaataaatGCACTTAAGAGAAAAAAAGATAGTAATATAAGCCATGCTTTTATTTGAATTATTGACA-----------------------------TTTTCT----AGTTTTCCA------------------------------------------------------------------------------------------------------------------------------------TTTATTCAAACAGTAAAATTTTACTAAAAATGGTAGAGTAGTTATGTAAACATTAGCTAAAGATGACCTATTGGACAGGCAATTTGCAAA-------TAAATTATTTTCTTCTTAGATGT--GAGGTAAATCAATAGTAACTTAGCAATGAAGATATAAACTTAGACATTATACCTATATTCCAATTGGAAAAGTGGATGGAGTTAATGCTATAAACACTTCAAAAAATG-TATTTCTATCCTCCTAATATGGACATCTCTAATAGTTTCTGCAACTCCACGGTATAAAAACCCTCTGCTATGTCCTCTCAAAACACCTCCTCAATCTGGGTCAGGTCTGACTTTCCTCAATTCAATTCTATCTTTATGTGCCCATATTCTGGACCAATTGTGCTCAATGGCATCTATGCTTTATT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21680817 876 + 198332218 TTTTGctactctcctcacacctacttttcagaaataacaaatcccatgttgtgtcttgaacacaata-tggtacttcccattcccatttcttttcacacgccccttgcaccttccgaaatgtcatcgctctctagttcacctggctactttct------------------acatagtgttattctgtgacgctt-cctcactatattcagtaagg-----aaaatgtactacctctatatcttattatttcttctcttgttgctcacatcacaagttatatattaatttgttacatgtttattt---ctatcaacacatgagattcttgaaggcatgaattttgtcatatttatcttcctatctccaaaacctactataaaatatgctt-----cataataaacactcaataagtatatgtggtttgaataaatGTACTTAAGAGAAAAA-----GGTAATATAAGCCATGCTTTTATTTGAATTATTGATA-----------------------------TTTTCT----AGTTTTCCA------------------------------------------------------------------------------------------------------------------------------------TTTATTCAAATAGTAAAATGTTACTAAAAATGGTAGAGTAGTTATGTAAACACTAGCTAAAGATGACCTATTGGACAGGCAATTTGCAAA-------TAAATTATTTTCTTCTTAGATAT--GAGGTAAATCAATAGTAACTTAGCAATGAAGATATAAACTTAGACATTATACCTATATTCCAGTTGGAAAGGTGGATGGAGTTAATGCTATAAACACTTCAAAAAATG-TATTTCTATCCTCCTAATATGGACATCTCTAATAGTTTCTGCAACTCCATGGTATAAAAACCCTCTGCTATGTCCTCTCAAAACACCTCCTCAGTCTGGGTCAGGCCTGCCTTTCCTCAATTCAATTCTATCTTTGTGTGCCCATATTCTGGACCAATTGTGCTCAACGGCATCTGTGCTTTATT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20293183 884 - 85365473 TTTTGctactctcctcacacctacttttcagaaataacaaatcccatgttgtgtcttgagcacgatatttgtacttcccattcccatttcttttcacatgccccttgtaccttccgaaatgtcattgctctctagttcacctggctactttct------------------acatagtgttattctgtgacgctt-cctcactatattcagtaagg-----aaaatgtactacctctgtgtcttatgatttcttctcttgttgctcacatcacaagttatatattaatttgttacatgtttatttcttctatcaacacatgagattcttgaaggcatgaactttgtcatatttatcttcctatctccaaaacctactataaaatatgcct-----cataataaacactcagtaagtatatgtggtttgaataaatGTACTTAAGAGAAAAA-AGATAGTAATATAAGCCATGCTTTTATTTGAATTATTGACA-----------------------------TTTTCT----AGTTTTCCA------------------------------------------------------------------------------------------------------------------------------------TTTATTCAAATAGTAAAATTTTACTAAAAATGGTAGAGTAGTTATGTAAACATTAGCTAAAGATGACCTATTGGACAGGCAATTTGCAAA-------TAAATTATTTTCTTCTTAGATAT--GAGGTAAATCAATAGTAACTTAGCAATGAAGATATAAACCTAGACATTATACCTATATTCCAATTGGAAAGGTGGATGGAATTAATGCTATAAACACTTCAAAAAATG-TATTTCTATCCTCCTAATATGGACATCTCTAATAGTTTCTGCAACTCCACAGTATAAAAACCCTCTGCTATGTCCTCTCAAAACACCTCCTCAGTCTGGGTCAGGCCTGCCTTTCCTCAATTCAATTCTATCTTTATGTGCCCATATTCTGGACCAATTGTGCTCAGTGGCATCTATGCTTTATT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16758457 888 + 184069350 ttttgctactctcctcacatccacttttcagaaataacaaatcccatgttgtgtcttgaacacaaca-tgatacttccgattcccatgtcttttcacacgtcccttgcaccttctgaaatggcatcgctctctagttcacctggctactttct------------------atatagtgttactctgtgacacttacttcactatattcagcaaggtaaattaaatgtactacctctgtatcttattatttcttctcttgttgctcacatcacaagttatatattaatttgttacacgtttatttctcctatcaacacatgagattcttgaaggcatgaattttgtgatatttatcttcctgtctccaaaacctactataaaatatgctt-----cataataaatactcaataagtatatgtggtttgaataaatGTACTTAAGAGAAAAA-AGACAGTAATATAAGCCATGCTTTTATTTGACTTAATGACA-----------------------------TTTTCT----AGTTTTCCA------------------------------------------------------------------------------------------------------------------------------------TTTATTCAAATAGTAAAATATTACTAAAAATGGTAGAGTAGTTATATAAACATTAACTAAAGATGACCTATTGGATGGGCAATTTGCAAA-------GAAATTATTTTCTCCTTAGATAT--GAGGTAAATCAATAGTAACTTAGCAATGAAGATATAAATTTAGACATTATACCTATATTCCAATTGGGGAGGTGGGTGGAGTTAATGCTATAAACACTACAAAAAATG-TATTTCTGTCCTCCTAATATGAGTATCTCTAATAGTTTCTGCAACTCCATGGTAT-AAAACCCTCTGCTATGAACTCTCAAAACACCTCCTCAATCTGGGTCGGGCCTGCCTTTCCTCAATTCAATTCTATCTTTATGTGCCCATATTCTGAACCAATTGTGCTCAATAGCATCTATGCTTTATT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20807771 888 + 189454096 ttttgctactctcctcacatccacttttcagaaataacaaatcccatgttgtgtcttgaacacaaca-tgatacttccgattcccatgtcttttcacacgtcccttgcaccttctgaaatggcatcgctctctagttcacctggctactttct------------------atatagtgttactctgtgacacttacttcactatatttagcaaggtaaattaaatgtactacctctgtatcttattatttcttctcttgttgctcacatcacaagttatatattaatttgttacacgtttatttctcctatcaacacatgagattcttgaaggcatgaattttgtgatatttatcttcctgtctccaaaacctactataaaatatgctt-----cataataaatactcaataagtatatgtggtttgaataaatGTACTTAAGAGAAAAA-AGACAGTAATATAAGCCATGCTTTTATTTGACTTATTGACA-----------------------------TTTTCT----AGTTTTCCA------------------------------------------------------------------------------------------------------------------------------------TTTATTCAAATAGTAAAATATTACTAAAAATGGTAGAGTAGTTATATAAACATTAACTAAAGATGACCTATTGGATGGGCAATTTGCAAA-------GAAATTATTTTCCCCTTAGATAT--GAGGTAAATCAATAGTAACTTAGCAATGAAGATATAAATTTAGACATTATACCTATATTCCAATTGGGGAGGTGGGTGGAGTTAATGCTATAAACACTACAAAAAATG-TATTTCTGTCCTCCTAATATGAGTATCTCTAATAGTTTCTGCAACTCCATGGTAT-AAAACCCTCTGCTATGAACTCTCAAAACACCTCCTCAATCTGGGTCGGGCCTGCCTTTCCTCAATTCAATTCTATCTTTATGTGCCCATATTCTGGACCAATTGTGCTCAATAGCATCTATGCTTTATT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16398400 888 + 178775436 TTTTGCTACTCTCCTCACACCCACTTTTCAGAAATAACAAATCCCATGTTGTGTCTTGAACACAACA-TGATACTTCCGATTCCCATGTCTTTTCACACGTCCCTTGCACCTTCTGAAATGGCATCGCTCTCTAGTTCACCTGGCTACTTTCT------------------ATATAGTGTTACTCTGTGACACTTACTTCACTATATTCAGCAAGGTAAATTAAATGTACTACCTCTGTatcttattatttcttctcttgttgCTCACATCACAAGTTATATATTAATTTGTTACACGTTTATTTCTCCTATCAACACATGAGATTCTTGAAGGCATGAATTTTGTGATATTTATCTTCCTATCTCCAAAACCTACTATAAAATATGCTT-----cataataaatactcaataaGTATATGTGGTTTGAATAAATGtacttaagagaaaaa-agacagcAATATAAGCCATGCTTTTATTTGACTTATTGACA-----------------------------TTTTCt----agttttcca------------------------------------------------------------------------------------------------------------------------------------tttattcaaatagtaaaatattactaaaaatgGTAGAGTAGTTATATAAACATTAACTAAAGATGACCTATTGGATGGGCAATTtgcaaa-------gaaattattttctccttagaTAT--GAGGTAAATCAATAGTAACTTAGCAATGAAGATATAAATTTAGACATTATACCTATATTCCAATTGGGGAGGTGGATGGAGTTAATGCTATAAACactacaaaaaatg-tatttctgtccTCCTAATATGAGCATCGCTAATAGTTTCTGCAACTCCATGGTAT-AAAACCCTCTGCTATGAACTCTCAAAACACCTCCTCAATCTGGGTCGGGCCTGCCTTTCCTCAATTCAATTCTATCTTTATGTGCCCATATTCTGGACCAATTGTGCTCAATAGCATCTATGCTTTATT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19882199 888 - 48547382 ttttgctactctcttcacacccacttttcagaaataacaaatcccatgttgtgtcttgaacacaata-tgatacttccgattcccatgtcttttcacacgccccttgcaccttccgaaatggcatcgctctctagttcacctggctactttct------------------acagagtgttactctgtgatgcttacctcactttattcagcaaggtaaactaaatgtactacctctgtatcttattatttattctcttgttgctcacatcacaagttatatattaatttgttacatgtttatttctcctatcaacacatgagattcttgaaggcatgaattttgtgatatttatcttcctatctccaaaacctactataaaatatgcta-----cataataaatgctcaataagtatatgtggtttgaataaatGTACTTAAGAGAAAAA-AGACAGTAGTATAAGCCATGCTTTTATTTGACTTACTGACA-----------------------------TTTTCT----AGTTTTCCA------------------------------------------------------------------------------------------------------------------------------------TTTATTCAAATAGTAAAATATTACTAAAAATGGTAGAGTAGTTATATAAACATTAGCTAAATATGACCTATTGGATGGGCAATTTGCAAA-------GAAATTATTTTCTCCTTAGATAT--GAGGTAAATCAATACTAACTTAGCAATGAAGATATAAATTTAGACATTATACCTATATTCCAATTTGGGAGGTGGATGGAGTTAATGCTATAAACACTACAAAAAATG-TATTTCTGTCCTCCTAATATGAGCATCTCTAATAGTTTCTGCAACTCCATGGTAT-AAAACCCTCTGCTATGTCCTCTCAAAACACCTCCTCAATCTGGGTTGGGCCTGCCTTTCCTCAATTCAATTCTACCTTTATGTGCCCATATTCTGGACCAATTGTGCTTAATGGCATCCATGCTTTATT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21240218 868 - 190850796 ttttactactctcctcacacctacttttcagaaataacaaatccaatgttgtgtcttgaacacagga-tgctgtttcccattcccatatcttttcacacgcaccttgcacctttcaaaatggcattgttctctaattcacccagctactttct------------------acatagtgttattctgtgaagtttacctcactatattcagtaagg-----taaatatactacctctgtatcttattaattctt---tcattgctcacatcacaagttat-----aatttgttacaggtttatttctcctaccaacacatgagattcttgaaggcaggaactttgtcatatttatcttcctagctccaaagcctactagaaaataggtct-----cataataaacactcaataaatatacgtggtttgaataaatGTATGTCAGAGAAAAAATGATTGTAATATAAGCCATGCTTTTATTTGAATTATTAA-----------------------------------------GGTTTTCCA------------------------------------------------------------------------------------------------------------------------------------TTTATTTAAATAGTAGAATTGTACTAAAAATGATAGCATAGTTATGCAAACATTAGCAAAAGATGACCTATGGGACAGGTAATTTGCAAA-------GGAATTATTTTCTCCTTAGAT-T--GAGGTAATTCAGTAGCAATTTAGCAATGAAGATATAAACTTAGACATTATGGCTGTACTCCAATTGAAAAGCTGAATAGGGTTAATGCTATAAATCCTTCATAAAATG-TATTTCTATCCTTCTAATATGAACATCTCTAATAGCTTCTGTAACTCCACTACATAAAAATCCTTTGCTATGTCCCCTCAAAACACCTCCTTAATCTGGGTCAGGTCTGCCTTTCCTCAGTTCAGTTCTACCTTTATGTGCTCATATTTTGGACCAATTGTGTTCAATGGCATTTATGCTTTATT i calJac3.chr3 I 313 C 0 s mm10.chr5 49226906 1048 + 151834684 GTATGATATTTtcctcccttctacatttcagaacca--gaatttcctgcagtttcctacagactata-t--tacttaatgcctccctgtctttttacatacagctagatcattctggaatggcttcagcctgcagtttaccaggcaattttctcctgagactacaagcctGACAGAATTCTGTGCTGGGGATTTT-CTAAGCTGTCTTCAGTCAGG------TACTTTGCTGCCTCTGTATCTTAGCAATACCTCCTTTGTTTCTTGCACTA----TTACACATTCATCTATTACATGTT--TTTCCATTGAGAAAACATGTGGTGCTTTACAATATGAACTTCGTCAAATTTGAGTTCAT-TCCTTAGAGAGTGATATAACCTCCCCTCACCCATATATTAAAGACCCAATAAGTATTTGCATAGTGAGGAAATGTACTCAAAAGAAAAATTGTCA--AATACAAGCCATGTTTTCATTTAAATTACTGGTAGTCTTAACAACAAATCTAGTAAGCAAAAGTTTTCTGTTCAGTTCTCTATATTTGTTTCTGTTTGGCAGCCACGTGGATTAATCCTAAGGATTCACAAATACTAGGCAAGTTTGGTCAATTTGTGTCTGTATATTAAATTTTTATGGTAGATTCATCTGATTTATTATATGACTACATGTCtttatttaaattttaaaa--ataataaaattGATAGTGCATTTA-ATAAGTATGAGGTGCAAATGACATAATAGATAAGTAATTTGCAAAGGAACATGAAACAATTATCTTAATAGGCTTTAAAGATAAACCAATTGGCATTTTGAGTTGACAAT-----TTTGGACATCATAGCCATATTTTGGTAGGAAA-CTGGATATGCTTAATGCTATAAACACT-CATAAAGTGATTTTTCTTTCTTTCTTGCATAAATACTTCTAACAATGTTTAC-------TTGTAGGAAAAACTTCTGA-ATTTTATCTCTATATGCTACTTTCATTTTTATGAGCCCTACGCT--CTTAAATTAAGCATATCCTTATGTGATTATGTTCTGTGCCAACTGTGTTTTGTAGCCTTTATGCTTTTTT i mm10.chr5 C 0 I 4093 e canFam3.chr3 3815588 2 - 91889043 I a score=577624.000000 s hg38.chr4_KI270790v1_alt 117578 186 + 220246 TAGAATAAGACCCTCCAAAGTTTCTAACTCTTGAGTC-----TTTAGTCTACCAATCTGTTCATCTTAAGTGAAAATTGATTTTCCTCTGACTCCATTTTCCTTGAGGGTTATGAAATAAAATGAGATTTGGTGTTCCATCATTTATACAT-TACCCACCATCTATTCATTCAACAAATATTTGGGTGCCAC s panTro4.chr4 21504080 187 + 193495092 TAGAATAAGTCCCTCCAAAGTTTCTAACTCTTGAGTC-----TTTAGTCTACCAATCTGTTCATCTTAAGTGAAAATTGATTTTCCTCTGACTCCATTTTCCTTGAGGGTTATGAAATAAAATGAGATTTGGTGTTCCATCATTTATACATCTACCCACCATCTATTCATTCAACAAATATTGGGGTGCCAC i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21681693 187 + 198332218 TAGAATAAGCCCCTCCAAAGTTTCTAACTCTTGAGTC-----TTTAGTCTACCAATCTGTTCATCTTAAGTGAAAATTGATTTTCCTCTGACACCATTTTCCTTGAGGGTTATGAAATAAAATGAGATTTGGTGTTCCATCGTTTATACATCTACCCACCATCTATTCATTCAACGAATATCTGGGAGCGAC i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20294067 187 - 85365473 TAGAATAAGCCCCTCCAAAGTTTCTAACTCTTGAGTC-----TTTAGTCTACCAATCTGTTCATCTTAAGTGAAAACTGATTTTCCTCTGACACCATTTTCCTTGAGGGTTATGAAATAAAATGAGATTTGGTGTTCCATCATTTATACATCTATCCACCatctattcattcaacaaatatttgggtgccac i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16759345 187 + 184069350 TAGAATAAGCCCCTCCAAAGTTTCTAACTCTTGAGTC-----TTCATTCTACCAATCTGTTCATCTTAAGGGAAAATTGATTTTCCTCTGACACCATTTTCCTTGAGGGTTATGAAATAAAATGAGATTCGGTGTTCCATCATTTACACATCTACCCACCATCTATTCATTCAACAAATATTTGGGTGCCAC i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20808659 187 + 189454096 TAGAATAAGCCCCTCCAAAGTTTCTAACTCTTGAGTC-----TTCATTCTACCAATCTGTTCATCTTAAGGGAAAATTGATTTTCCTCTGACACCATTTTCCTTGAGGGTTATGAAATAAAATGAGATTCGGTGTTCCATCATTTACACATCTACCCACCATCTATTCATTCAACAAATATTTGGGTGCCAC i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16399288 187 + 178775436 TGGAATAAGCCCCTCCAAAGTTTCTAACTCTTGAGTC-----TTCATTCTACCAATCTGTTCATCTTAAGGGAAAATTGATTTTCCTCTGACACCATTTTCCTTGAGggttatgaaataaaatgagattcgGTGTTCCATCATTTACACATCTACCCAccatctattcattcaacaaatatttgggtGCCAC i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19883087 187 - 48547382 TAGAATAAGTCCCTCCAAAGTTTCTAACTCTTGAGTC-----TTCATTCTACCAATCTGTTCATCTTAAGGGAAAACTGATTTTCCTCTGACACCATTTTCCTTGAGGGTTATGAAATAAAATGAGATTCGGTGTTCCATCATTTACACATCTACCCACCATCTATTCATTCAACAAATATTTGGGTGCCAC i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21241086 191 - 190850796 TAGAATAAACCCCTCCAAAGTTTCTAACTCTTGAGTTGAGCGTTCAGTCTACCAATCTGTTCATCTTAAGTG-AAATTGATTTTCCTCTGACATCATTTGCCTTGAGGGTTATGAAATAAAATGAAATTTGGTGTTCCATCATTTATATGTCTACCCACTatctattcattcaacaaatatttgggtgccat i calJac3.chr3 C 0 C 0 e mm10.chr5 49227954 4093 + 151834684 I e canFam3.chr3 3815588 2 - 91889043 I a score=904137.000000 s hg38.chr4_KI270790v1_alt 117764 277 + 220246 ATTCAAGCCACTATTCCATCACCCTTGCTC--TAACTTCCCATCCATTAAGAATTATGCCATCTTTTATCAGGCTTTCTACATCTTTGTGCTATCACAAGGAAACTCCCTCAGCTTTTAATTATTTGAGGACATGTACAATTTTACCTTTTTT-----TCCTTTTTTATATCCCTGGTTGCTTATGTCAACTTTCACAGTGATGA-TCTTCTAACATAATAGATTCCATGCTTTTTGATGTTCAGCATTATTGTTACACTTTAGTTTTCTACCACCCTACACTTT s panTro4.chr4 21504267 277 + 193495092 ATTCAAGCCACTATTCCATCACCCTTGCTC--TAACTTCCCATCCATTAAGAATTATGCCATCTTTTATCAGGCTTTCTACATCTTTGTGCTATCACAAGGAAACTCCCTCAACTTTTAATTATTTGAGGACATGTACAATTTTACCTTTTTT-----TCCTTTTTTATATCCCTGGTTGCTTATGTCAACTTTCACAGTGATGA-TCTTCTAACATAATAGATTCCATGCTTTTTGATGTTCAGCATTATTGTTACACTTTAGTTTTCTACCACCCTACACTTT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21681880 276 + 198332218 ATTCAAGCCACTATTCCATCACCCTTGCTC--TAACTTCCCATTCATTAAGAATTATGCCATCTTTTATCAGCCTTTCTACATCTTTGTGCTATCTCAAGGAAACT-CCTCAACTTTTAATTATTTGAGGACATGGACAATTTTACCTTTTTT-----TCCTTTTTTATATCCTTGGTTGCTTATGTCAACTTTCACAGTGATGA-TCTTCTAACATAATAGATTCCATGCTTTTTGATGTTCAGCATTATTGTTACACTTTAGTTTTCTACCACCCTACACTTT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20294254 277 - 85365473 gttcaagccactattccaTCACCCTTGCTC--TAACTTCCCATCCATTAAGAATTATGCCATCTTTTATCAGGCTTTCTACATCTTTGTGCTATCACAAGGAAACTCCCTCAACTTTTAATTATTTGAGGACATGTACAATTTTACCTTTTTT-----TCCTTTTTTATATCCTTGGTTGCTTATGTCAACTTTCACAGTGATGA-TCTTCTAACATAATAGATTCCATGCTTTTTGATGTTCAGCATTATTGTTACACTTTAGTTTTCTACCATTCCACACTTC i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16759532 277 + 184069350 ATTCAATCCACTATTGCATCACCCTTGCTC--GAAGTTCCCATCCACTAAGAATTATACCATCTTTTATCAGCCTTTCTACATCTTTGTCCTATCACAAGGAAACTCCCTGAACTTTTAATTTTTTGAGGACATGGACAATTTTACCTTTTTT-----CCCTTTTTTATATCCTTGGCTGCTTATGTCAACTTTCACAGTGATGA-TCTTCTAAAATAATAGATTCCATGCTTTTTGATGTTCAGCATTATTGTTGCACTTTAGTTTTCTACCACTCCACCTTTT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20808846 277 + 189454096 ATTCAATCCACTATTGCATCACCCTTGCTC--GAAGTTCCCATCCACTAAGAATTATCCCATCTTTTATCAGCCTTTCTACATCTTTGTCCTATCACAAGGAAACTCCCTCAACTTTTAATTTTTTGAGGACATGGACAATTTTACCTTTTTT-----CCCTTTTTTATATCCTTGGCTGCTTATGTCAACTTTCACAGTGATGA-TCTTCTAAAATAATATATTCCATGCTTTTTGATGTTCAGCATTATTGTTGCACTTTAGTTTTCTACCACTCCACCCTTT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16399475 277 + 178775436 ATTCAATCCACTATTGCATCACCCTTGCTC--GAAGTTCCCATCCACTAAGAATTATCCCATCTTTTATCAGCCTTTCTACATCTTTGTCCTATCACAAGGAAACTCcctcaacttttaattttttgaggacatggacaattttccctttttt-----cccttttttatatcCTTGGCTGCTTATGTCAACTTTCACAGTGATGA-TCTTCTAAAATAATAGATTCCATGCTTTTTGATGTTCAGCATTATTGTTGCACTTTAGTTTTCTACCACTCCACCCTTT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19883274 277 - 48547382 ATTCAATCCACTATTCCATCACCCTTGCTC--TAAGTTCCCATCCACTAAGAATTACCCCATCTTTTATCAGCCTTTCTACATCTTTGTCCTATCACAAGGAAACTCCCTCAACTTTTAATTTTTTGAGGACATGGACAATTTTACCTTTTTT-----CCCTTTTTTATATCCTTGGTTGCTTATGTCAACTTTCACAGTGATGA-TCTTCTAACATAATAGATTCCATGCTTTTTGATGTTCAGCATTATTGTTACACTTTAGTTTTCTACCACTCCACCCTTT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21241277 277 - 190850796 attcaagccactattccaTGACCCTTCCTC--TAATTCCCCACCCATTAAGAATTATGCCATCTTTTATCAGCCTTTCCACATCTTTGTCCTAGCACAAGGAAACTCCCTCAACTTCTAATTATTTAAGGATGTGAACAATGTTACCTTCTTT-----TCCTTTTGTATATCCCTGGTTGCTTATGTCAACTTTCACAGTGATGA-TTTTCTAACATAATAGATTCCATGCTTTCTGATGTTCAGCGTTACTGCTAAACGTTAGTTTCCTACGACTCTATACTTT i calJac3.chr3 C 0 C 0 s canFam3.chr3 3815590 267 - 91889043 ATACAAACTACCATCCCGTTA---TTTCTCAATAACTTCCTATCCCTTAGGGTTGATACTGTCTTCTATCAGCATCTC--CATTTGTGTTCTGTCATTA-GAAActccctcaacctctgaggactttaggacacagatcactttccctttcttctgcatcctttcttatggccttggttg-----------gttcacagtgatgactcttctaacac-gcagatcccacgtgtcttgacctgctgcattcgtgctccactttagctgcctatcagcctatgtttt i canFam3.chr3 I 2 C 0 e mm10.chr5 49227954 4093 + 151834684 I a score=591770.000000 s hg38.chr4_KI270790v1_alt 118041 219 + 220246 CGACTTCAAAAATAGTCTTTTGTCA--------------------------------------gagacagagtttcgctcttgttgccca--ggctggagtgcaatggtgtgatctcagctcactgcaacctctgcctcccgggttcaagggatcctccttcctcagcctcctgagtacctgagattacaggtgcgagccaccatgcctggctaatttttgtatttttcacttgttttttttgttttgggggtttcacc s panTro4.chr4 21504544 218 + 193495092 CGACTTCAAAAATAGTCTTTTATCA--------------------------------------gagacagagtttcgctcttgttgccca--ggctggagtgcaatggtgtgatctcagctcactgcaacctctgcctcccgggttcaagggatcctcctgcctcagcctcctgagtacctgagattacaggtgtgagccaccatgcctggctaatttttgtattttttatttgttttttt-gttttggggttttcacc i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21682156 218 + 198332218 CGACTTCACAAATAGTCTTTTATCA--------------------------------------gagacagagtttcgctcttgttgccca--ggctggagtgcaacagtgtgatctcagctcactgcaacctctgcctcccgggttcaagggatcctcctgcctcagcctcctgagtacctgagattacaggtgcaagccaccatgcctggctaatttttgtattttttatttgttttttt-gttttgggggtttcatc i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20294531 217 - 85365473 TGACTTCACAAATGGTCTTTTATCA--------------------------------------gagatggagttttgctcttgttgccca--ggctggagtgcaatggtgtgatctcagctcactgcaacctctgcttctcgggttcaagggatcctcctgcctcagcctcctgagtacctgagattacaggtgtgagtcaccatgcctggctaatttttgtattttttatttgttttttc--ttttgggggtttcacc i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16759809 218 + 184069350 TGACTTCACAAATGGTCTTTTATCA--------------------------------------gagacagaatttctctcttgttgcccaggggctggagt-caagggtgtgagctcagctcactgcaacctctgcctcccgggttcaagggatcctcctgcctcagtctcctgagtacctgggattacatgtgcgagccaccatgcctggctactttttgtatttttcatatg-tgtttt-gttttgcagatttcacc i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20809123 218 + 189454096 TGACTTCACAAATGGTCTTTTATCA--------------------------------------gagacagaatttctctcttgttgcccaggggctggagt-caatggtgtgatctcagctcactgcaacctctgcctcccgggttcaagggatcctcctgcctcagtctcctgagtacctgggattacatgtgcgagccaccatgcctggctactttttgtatttttcatgtg-tgtttt-gttttgcaggtttcacc i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16399752 218 + 178775436 TGACTTCACAAATGGTCTTTTATCA--------------------------------------GGGACAGaatttctctctggttgcccaggGGCTGGAgt-caatggtgtgatctcagctcactgcaacctctgcctcccgggttcaagggatcctcctgcctcagtctcctgagtacctgggattacatgtgcgagccaccatgcctggctactttttgtatttttcatatg-tttttt-gttttgcaggtttcacc i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19883551 219 - 48547382 TGACTTCACAAATGGTCTTTTATCA--------------------------------------gagatggaatttctctcttgttgcccaggggctggagt-caatggtgtgatctcggctcactgcaacctctgcctcccgggttcaagggatcctcctgcctcagcctcctgagtacctgggattacatgtgcgagccaccatgcctagctaatttttgtatttttcatatgttttttt-gttttgcaggtttcacc i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21241554 255 - 190850796 CGACTTCATAAATGGTCCTTTATCACCAACTCTTAACTTCCATCCTCttttttttttttttgtgtgaagaagttttgctcttgttgccca--ggctggagtgcaattgcataatctccgctcactgcaacctctgcctcctgggttcaaggaatcctcctgcctcagcctcctgagtacctgggattacaggtgtgtaccaccacacctggctaattgttttaatttt-gttcgtttgttt-gtttttggggtttcacc i calJac3.chr3 C 0 C 0 e mm10.chr5 49227954 4093 + 151834684 I e canFam3.chr3 3815857 0 - 91889043 C a score=2668898.000000 s hg38.chr4_KI270790v1_alt 118260 816 + 220246 atgttgcccaggctgttctcgaactcctgaccccaagtgatccacccggcttggcctcacaaattgctgggattacaggcatgggccattgtggctggccAACTTCCATCTTTATAATAACCTCCTCTTTGCCTTTCATGCAATTGCTCTTATTGAAAGTAAATAGAatcctttcaataaatatctgtcccagggtttataatgagtcacacttca------gtgcaagacatacaaag---tagaaccatgtaggaactctattccaatggaagtaataggagctacaaacttatgagggaagcagataagaaaattcaccattacattagactcatataggtgccacaagaagggtatCTGGAGCAGGAGATGGAGG--TCCAGCGTAAAGTAATGTCAGCTAAATATTTTGGGAACACTCTTCAAGAATTTCCAACTCAAATGCTTCCATGAAAGCATTAAAAACTATTCCATCCCTCTGGATGCCCC-----AAAAGAGTTTGCATAATTGTACATAACACAAAAATAATCTTATACTGAGGTTATATTTATGACAAGTTTTGTATCTATTTCTAAAC---GGTACGTTCTTCCAGCAGACTGA-TTTAACACTCTTCGGGTCACAGACGTTTTAAAAAATCTTTTTCATAATTATTTGGCAAATTTATACCTATCTACTCTTTAGGGACTTTTGTACAAGCTCcctcacaaaaatcttctaaagttataagttt---attgcaccc----------atttacatagaaggaaactaaaaattaacagctatgtaa--ggcat-----------------------------------ctatgtttacctagctagtagacagcaaacctaCATTAAAAGTG s panTro4.chr4 21504762 822 + 193495092 atgttgcccaggctgttctcaaactcctgaccccaagtgatccacccagcttggcctcacaaattgctgggattacaggcatgggccattgtggctggccAACTTCCATCTTTATAATAACCTCCTCTTTGCCTTTCATGCAATTGCTCTTATTGAAAGTAAATAGAATCCTTTCAATAAACATCTGTCCCAGGGtttataatgagccacacttcatgttcagtgcaagatatacaaag---tagaaccatgtagaaaccctgttccaatggaagtaataggagctacaaacttatgagggaagcagataagaaaattcaccattacattagactcatataggtgccacaagaagggtatCTGGAGCAGGAGATGGAGG--TCCAGCGTAAAGTAATGTCAGCTAAATATTTTGGGAACACTCTTCAAGAATTTCCAACTCAAATGCTTCCATGAAAGCATTAAAAACTATTCCATCCCTCTGGATGCCCC-----ACAAGAGTTTGCATAATTGTACATAACACACAAATAATCTTATATTGAGGTTATATTTATGACAAGTTTTATATCTATTTCTAAAT---GGTACATTCTTCCAGCAGACTGA-TTTAACACTCTTTGGGTCGCAGACATTTAAAAAAATCTTTTTCATAATTATTTGGCAAATTTATACCTATCTACTCTTTAGGGACTTTTGTACAAGCTCcctcacaaaaatcttctaaagttataagttt---attgcaccc----------atttacatagaaggaaactaaaaattaacagctatgtaa--ggcat-----------------------------------ctatgtttacctagctagtagacagcaaacctaCATTAAAAGTG i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21682374 822 + 198332218 atgttggccaggctgttctcgaactcctgaccccaagtgatccgcccgacttggcctcacaaattgctgggattacaggcatgggccattgtgcctggccAACTTCCATCTTTATAATAACCTCTTCTTTGCCTTTCATGCAATTGCTCTTATTGAAAGTAAATAGAATCCTTTCAATAAATATCTGTCCCAGGGtttataatgagccacacttcatgttaagtgcaagacatacaaag---tagaaccacgtaggaatcctattccaatggaagtaataggagctacaaacttatgagggaagcagataagaaaattcaccattacattagactcatataggtgccacaagaagggtatctagagcaggagatggagg--tccagcgtaaagtaATGTCAGCTAAATATTTTGGGAACACTCTTCAAGAATTTCCAACTCAAATGCTTCCATGAAAGCATTAAAAACTATTCCATCCCTCTGGATGCCCC-----AAAAGAGTTTGCATAATTTTACATAACACACAAATAATCTTATATTGAGGTTATATTTATGACAAGTTTTATATCTATTTCTAAAT---GGTACATTCTTCCAGCAGACTGA-TTTAATACTCTTCGGGTCGCAGACGTTTTAAAAAATCTTTTTCATAATTATTTGACAAATTTATACCTATCTACTCTTTAGGGACTTTTGTACAAGCTCcctcacaaaaatcttctaaagttagaagttt---attgcaccc----------atttacatagaaggaaactaaaaattaacagctatgtaa--ggcat-----------------------------------ctatctttacctagctagtagacagcaaaCCTACATTAAAAGTG i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20294748 819 - 85365473 atgttggccaggctgttcttgaactcttaaccccaagttatccgcccggcttggcctcacaaattgctgggattacaggcatgggccattgtgcctggccAACTTCCATCTTTACAATAACCTCCTCTTTGCCTTTCATGCAATTGCTTTTATTGAAAGTAAATAGAATCTTTTCAATAAATATCTGTCCCAGGGCTTATAATGGGCCACACTTCATGTTAAGAGCAAGACATACAAAG---TAGAACCATGTAGGA--CCCATTCCAATGGAAGTAATAGGAGCTACAAACTTATGAGGGAAGCAGATAAGAAAAGTCACCATTACATTAGACTCTTATAGGTGCCACAAGAATGGTATCTAGATCAGGAGATGGAGG--TCCAGCACAAAGCAATGTCAGCTAAATATTTTGGGAACACTCTTCAAGAATTTCCAACTCAAATGCTTCTATGAAAGCATTAAAAACTATTCCATCCCTCTGGATGCCCC-----AAAAGAGTTTGCATAATTGTACATAACCCACAAATGATCTTATATTGAGGTTATATTTATGATAAGTTTTATATCTATTTCTAAAT---GGTACATTCTTCCAGCAAACTGA-TTTAACACTCTTTGGGTCGTGGAT-TTTTAAAAAATCTTTTTCATAATTATTTGACAAATATATTACTATCTACTCTTTAGGGACTTTTGTACAAGCTCcctcacaaaaatcttctaaagttagaagttc---attgcaccc----------atttacatagaaggaaactaaaaattaacagctatgtaa--ggcat-----------------------------------ctatgtttacctagctagtagacagcaaacctacattaaaagtg i nomLeu3.chr20 C 0 I 324 s rheMac3.chr5 16760027 817 + 184069350 atgttggccaggctgttctcgaactcctgaccccaagtgatccgc----tttggcctcacaaattgctgggattacaggcgtgggccattgttcctggccAACTTCCATCTTTATAATAACCTTCTCTTTGCCTTTCATGCAATTGCTCTTATTGAAAGTAAATAGAATCCTTTCAATAAATATCTGTCCCAGGGCTTATAATGAGTCACATTTCATGTTAAGT-CAAGTCATACAAAG---TAGAACCACGTAGGAACCCTATTCCAATCGAAGTAATAGGAGCTACAAACTTATGAGGGAAGCAGATAAGAACATTCACCATTACATGAAACCCATACAGGTGCCACAGGAAGGGTATCTCGAGCAGGAGATGGAGG--TCCAGCACAAAGTAATATCAGTTAAATATTTTGAGAACACCCTTCAAGACATTCCAACTCAAATGCTTCCATGAAAGCATTAAAAACTATTCCATCCCTCTGGATGCCCC-----AAAAGAGTTTGCATAATTGCACATAACACACAAATAATCTTATATTGAGGTTATATTTATGACAAGTCTTATATCCATTTCTAAAT---GGTACATTCTTCCAGAAGACTGA-TTTAACACTCTTTGGGTCGCAGACCTTTTAAAAAATCTTTTTCATAATTATTTGACAAATTTATACGTATATGCTCTTCAGGGACTTTTGTACAAGCTCcctcacaaaaatattctaaagttagaagttt---attgcaccc----------atttacatagaaggtaactaaacattaatagctatgtaa--ggcat-----------------------------------ctatgtttacctagctagtagacagcaaaCCTACATTAAAAGTG i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20809341 817 + 189454096 atgttggccaggctgttctcgaactcctgaccccaagtgatccgc----tttggcctcacaaattgctgggattacaggcgtgggccattgttcctggccAACTTCCATCTTTATAATAACCTTCTCTTTGCCTTTCATGCAATTGCTCTTATTGAAAGTAAATAGAATCCTTTCAATAAATATCTGTCCCAGGGCTTATAATGAGTCACATTTCATGTTAAGT-CAAGTCATACAAAG---TAGAACCACGTAGGAACCCTATTCCAATCGAAGTAATAGGAGCTACAAACTTATGAGGGAAGCAGATAAGAACATTCACCATTACATGAGACCCATACAGGTGCCACAGGAAGGGTATCTCGAGCAGGAGATGGAGG--TCCAGCACAAAGTAATATCAGTTAAATATTTTGAGAACACCCTTCAAGACTTTCCAACTCAAATGCTTCCATGAAAGCATTAAAAACTATTCCATCCCTCTGGATGCTCC-----AAAAGAGTTTGCATAATTGCACATAACACACAAATAATCTTATATTGAGGTTATATTTATGACAAGTCTTATATCCATTTCTAAAT---GGTACATTCTTCCAGAAGACTGA-TTTAACACTCTTTGGGTCGCAGACCTTTTAAAAAATCTTTTTCATAATTATTTGACAAATTTATACGTATATGCTCTTCAGGGACTTTTGTACAAGCTCCCTCACAAAAATATTCTAAAGTTAGAAGTTT---ATTGCACCC----------ATTTACATAGAAGGTAACTACACATTAATAGCTATGTAA--GGCAT-----------------------------------CTATGTTTACCTAGCTAGTAGACAGCAAACCTACATTAAAAGTG i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16399970 817 + 178775436 atgttggccaggctgttctcaaactcctaaccccaagtgatccac----cttggcctcacaaattgctgggattacaggcgtgggccattgTTCCTGGCCAACTTCCATCTTTATAATaatcttttctttgcctttcacgCAATTGCTCTTAttgaaagtaaatataatccttTCGATAAATATCTGTCCCAGGGCTTATAATGAGTCACATTTCATGTTAAGT-CAAGTCATACAAAG---TAGAACCACGTAGGAACCCTATTCCAATCGAAGTAATAGGAGCTACAAACTTATGAGGGAAGCAGATAAGAACATTCACCATTACATGAGACCCATATAGGTGCCACAGGAAGGGTATCTAGAGCAGGAGATGGAGG--TCCAACACAAAGTAATATCagttaaatattttgagaacACCCTTCAAGACTTTCCAACTCAAATGCTTCCATGAAAGCATTAAAAACTATTCCATCCCTCTGGATGCCCC-----AAAAGAGTTTGCATAATTGCACATAACACACAAATAATCTTATATTGAGGTTATATTTATGACAAGTCTTATATCCATTTCTAAAT---GGTACATTCTTCCAGAAGACTGA-TTTCACACTCTTTGGGTCGCAGaccttttaaaaaacctttttcaTAATTATTTGACAAATTTATACCTATATGCTCTTCAGGGACTTTTGTACAAGCTCCCTcacaaaaatattctaaagttaGAAGTTT---ATTGCACCC----------ATTTACATAGAAGGTAACTAAACATTAATAGCTATGTAA--GGCAT-----------------------------------CTATGTTTACCTAGCTAGTAGACAGCAAACCTACATTAAAAGTG i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19883770 808 - 48547382 atgttggccaggctgttctcgaactcctgaccccaagtgatccgc----cttggcctcacaaattgctgggattacaggcatgggccattgttcctggtcAACTTCCATCTTTATAATAACCTTCTCTTTGCCTTTCATGCAATTGCTCTTATTGAAAGTAAATAGAATCCTTTCAATAAATATCTGTCCCAGGGCTTATAATGGGTCACATTTCATGTT------AAGTCATACAAAG---TAGAACCATGTAGGAACCCTATTCCAATCGAAGTAATAGGAGCTACAAACTTATGAGGGAAGCAGATAAGAACATTCACCATTC----AGACTCATATAGGTGCCACAGGAAGGGTATCTAGAGCAGGAGATGGAGG--TCCAGCACAAAGTAATATCAGTTAAATATTTTGAGAACACCCTTCAAGACTTTCCAACTCAAATGCTTCCATGAAAGCATTAAAAACTATTCCATCCCTCTGGATGCCCC-----AAAAGAGTTTGCATAATTGCACATAACACACAAATAATCTTATATTGAGGTTATATTTATGACAAGTCTTATATCCATTTCTAAAT---GGTACATTCTTCCAGCAGACTGA-TTTAACACTCTTTGGGTCGCAGACCTTTTAAAAAATCTTTTTCATAATTATTTGACAAATTTATACCTATATGCTCTTCAGGGACTTTTGTACAAGCTCCTTCACAAAAATATTCTAAAGTTAGAAGTTT---ATTGCACCC----------ATTTACATAGAAGGTAACTAAACATTAATAGCTATGTAA--GGAAT-----------------------------------CTATGTTTACCTAGCTAGTAGACAGCAAACCTACATTAAAAGTG i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21241809 822 - 190850796 atgttggccaggctgttctagaactcctgaccccaagtgatctgcctgtcttggcctcctaaccctctgggattacaggcgtgggccatgatgcctggccAACATCCATCTTTATAATAACCTCCTCTTTGCCTGTTATGCAACTGCTTATATTAAAACTAAATATGATCCTTTCAATACATATCTGTCCCAGGGCTTATAATAGGCCACACTTCATGTTAAGTGCAAGACATACAAAGGAATGATACCAGGAAAGAATCATATTCTAATGGAAGAAATAGGAGCTACAAACTTATGAGGGAAGCAGATAAGAAAATTCACCTTTA-ATGAGAATCATACAAGTGCTACAAGAAGGGTATCTAGAGGAGGAGATAAAGG--TCCAGTGCAAAGTAATATCAATTAAATATTTTGGGAATACTCTTCAAAAAGTTCCAACTCAAATGCTTCCATGAAAGCATTAAAAACTATTCCATCCCTCTGGATGCCCC-----AAAAGAGTTTGCATGATTGCATATAACACACAAATAATCCGATATTGTGGTTATATTTGTGACAAGCTTTATATCTATTTTTAAAT---GGTAAATTCTTCCAGCAGACTGA-TTAAACACTCTCC--ATCACAGACCTTTTAAAAAATATTTTTCacaattatttgacacatgtgtatccatctactctttaggcacttttatacaagctccctcacaaaaatcttctaaagttagaagttt---attataccc----------atttacatagaaggaaactaaaaattagTAGCTATGTAA--GGCAA-----------------------------------CTATGTTTACCTAGCTAGCTGACAGCAAACCTACATTAACAGTG i calJac3.chr3 C 0 C 0 s canFam3.chr3 3815857 800 - 91889043 atactgcccaa--tgctctttaa---------------------------------tcacaaactctt--------------------------------aatttccccctctataatAACTTTCTTTTTGCCTGTCGTGCAAATTCTCTTAATGAAACTAactc--atgtagttaataaatatctacccaagggctcacaatgagccaggcatcatgctaagttcaagacatacaaag---tagagtaagataaaaatcctgttctaaaggagttagtaagagcta-aagctaatgagggaagcagataagaaaattcaccattacatgaaggtcagctaagtgccacaggaagggtatcta----aggggatgatggaaTTCTGAGTAAAGAAATATCAATTAGATATTTTGGCAACACCCCTTAAGAACTTCCAACTCAAAAGCATCCATGAACGCACTAAAAACTGTCCCATCTTTCTGGATCCCCCCATTTAGACAAGTCT---TTATTGTCTATGGGACAT--GTGATCTTACAGCGTAGTTATAGTTATTACAAGTTTTATATCTATTGCTAAATTAAATTAAATTCCTCTAGAAGGCTGATTTTAACCTTCTTTGGGCCATGGATCTTTTTCAAAAGCTTACACATAATTATGTGATAAATTTTTACCTAT---TATTTTAAGCACTTTTGCACAAGTTCCCTCACAAAAGCCTCTTAATGTTAGGAGTTTTTAATAGTACTCATGATACCTAATTTACATATAATAAAACTAAAAATTAATAGCTATGCAACTGGCCTATGTTTACCTGAAAATTAGTTgttatgcaattggcccatgtttatctagctagtacatggcagacctaga-tATAGGTG i canFam3.chr3 C 0 I 1 e mm10.chr5 49227954 4093 + 151834684 I a score=2705936.000000 s hg38.chr4_KI270790v1_alt 119076 873 + 220246 AGGtatagtggagactgctaggtaatccccccaatttt-tttttgtttctttttggacatatagttgagctgtatttcccagtcttcaattccattggatttggccataaaacccagttctagttgatgggatgttagtgaatataatgaaagagatttctgggccaagctaataaaa-atgccacacttttgctccttggtactcctttcctttttctagagtactgggaggttagtatcttctaaggcaaatgtgaaagtcatgcattgaagatagcCAACC-------------------------------------------------------TGAACATCCACTTAGACAATTAAATGAGAGAGAAATAAATCTTTGTGTGGAAAGTTAACAACAAGGCAGGCTCTATTTAATACTACAGGTTATCCTACCTTATTGAATGCAGTAGACcagcatttatcaaacattttagtcttaggacctattgacactttcaaaaattatcaaagatttct--aagaacttttgttaatatgggttttatc--ttgatatttaccttattagaatttaaactgagaaattatta----acatatttattcattttaagat-------ataaagttagtacatgttaacataaatattgtttttg---aaaaaa-atgtaaattttccaaaataaaaaaaa------ttgtgaagattggcattgctttacatttttgcaaatacctttaatatttcggttattagaaaatacttacattctcatatctgcttctggatttagtctgctatgatagtcatcgtagagcttctagaaaagtttactgtacatttattagcaaaagaagatgaaaagag-aaatatcatctcagtgttactacaaaaataga-ttcatttcttgaaccagctaaaagaatctcagaggtccacacctcat s panTro4.chr4 21505584 871 + 193495092 AGGtatagtggagacagctaggtaatccccccaatttt-tttttgtttctttttggacatatagttgagctgtatttcccagtcttcaattccattggatttggccataaaacccagttctagttgatgggatgttagtgaatgtaacgaaagagatttttgggccaagctaataaaa-atgccacacttttgctccttggtactcctttcctttttctagagtactgggaggttagtatcttctagggcaaatgtgaaagtcatgcattgaagatagcTAACC-------------------------------------------------------TGAACATCCACTTAGACAATTAGATGAGAGAGAAATAAATCTTTGTGTGGAAAGTTAACAA---GGCAGGCTCTATTTAATACTACAGGTTATCCTACCTTATTGAATGCAGTAGACcagcatttatcaaacattttagtcttaggacctattgacacttttaaaaattatcaaagatttct--aagaacttttgttaatgtgggttttatc--ttgacatttaccttattagaatttaaactgagaaattatta----acatatttattcattttaagat-------ataaagttagtacatgttaacataaatattgtttttg---aaaaaa-atgtaaattttccaaaataaaaaaaa-----attgtgaagattggcattgctttacatttttgcaaatacctttaatatttgggttattagaaaatacttacattctcatatctgcttctggatttagtctgctatgatagtcatcatagagcttctagaaaagtttactgtacatttattagcaaaagaagatgaaaagag-aaatatcatctcagtgttactacaaaaataga-ttcatttcttgaaccagctaaaagaatctcagaggtccacacctcat i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21683196 880 + 198332218 AGGtatagtggagactgctaggtaatcccccaaattgtatttttgtttctttttggacacatagttgagctgtatttcccaatcttcaattccattggatttggccataaaacccagttctagttgataggatgttagtgaatataatgaaagagatttcttggccaagctaaaaaaatatgccacacttttgctccttgatactcctttcctttttctagagtactgggaggttagtatcttctagggcaaatgtgaaagtcatgcattgaagatagcTAACC-------------------------------------------------------TGAACATCCACTTAGACAATTAGATGAGAGAGAAATAAATCTTTGTGTGGAAAGTTAACAATAAGGCAGGCTCTATTTAATACTACAGGTTATCCTACCTTATTGAATGCAGTAGACcagcatttatcaaacattttagtcttaggacctattgacacttttaaaaattatcaaagatttct--aagaacttttgttaatgtgggtttcatc--ttgatatttaccttattcgaatttaaactgagaaattatta----acatatttattcattttaagat-------ataaagttagtacatgttaacataaatattgtttttgaaaaaaaaa-atgtaaattttccaaaataaaaaaaa----tattgtgaagattggcactgctttacctttttgcaaatacctttaatatttgggttattagaaaacacttacattctcatatctgcttctggatttagtctgctatgatagtcatcatagagcttctagaaaagtttaccgtacatttattagcaaaagaaaatgaaaagag-aaatatcgtctcagtgttactacaaaaataga-ttcatttcttgaaccagctaaaagaatctcagaggtccacacctcat i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20295891 881 - 85365473 AGGtatagtggagactgctaggtaatcccctaaattttatttttgtttcttttttgacacatagttgggctgtatatcccagtcttcaattccattggatttggccataaaaccccgttctagttgatgggatgttagtaaatgcaatgaaagagatttctgggccaagataataaaaaatgccacacttttgttccttggtactcgtttcctttttctagggtactgggaggttagcatcttctaggacaaatgtgaaagtcatgcattgaaggtggcTAACC-------------------------------------------------------TGAACATCCACTTAGACAATTAGATGAGACAGAAATAAATCTTTGTGTGGAAAGTTAATAACAAGGCAGGCTCTATTTAATACTACAGGTTATCCTACCTTATTGAATGCACTAGGCcagcatttctcaaacattttagtcttaggacctattgacacttctaaaaattatcaaagattcct--aagaacttttgttaatgtgggttttatc--ttgatatttaccttactagaatttaaactgaaaaattatta----acacatttattcattttaagat-------ataaagttagtacatgttaacataaatatcatttttg---aaaaaa-atgtaaattttccaaaataaaaaaaacatatattgtgaagattggcattgctttacatttttgcaaatacctttaatatttgggttattagaaaatgcttacattctcatatctgcttctggatttagtctgctatgatagtcatcatagagcttctaggaaagtttactgtacttttattagcaaaataaaatgaaaagag-aaatatcatctcagtgttactacaaaaataga-ttcatttcctgaatcagctaaaagaatctcagaggtccacacctcat i nomLeu3.chr20 I 324 C 0 s rheMac3.chr5 16760844 871 + 184069350 AGGtatagtggagactgctaggtaattccccaatttttacttttgtttctttttgcatacatagttgggctgtatttcccagttttcaattccattggatttggccataaaacccagttctagttcatgggatgttagtgaatgtaatgaaagagatttctgggccaagctaataaaa-atgccccacttttgctcctcggcactggtttcctttttctagggtactgggaggttagtatcttctagggcaaatgtgaaagtcatgcattgaagatggTTAACC-------------------------------------------------------TGAACATCCACTTAGACAATTAGATGAGAGAGAAATAAATCTCTGTGTGGAAAGTTAACAACAAGGCAGGCTCTACTTAATACTACAGGTTATCCTACCTTATTGAATGCACTAGGTcagcatttctcaaacattttagtcttcggacctattgatactttccaaaattatcaaagattcct--aagaacttttgttaatgtgggatttatc--tggctatttaccttattagaatttaaactgagaaagtgtta----acatatttattcattttaagat-------acaaagttagtacatgttaacataaatatcatttttg---aaaaaatacgtaaattttccaacataaaaaaac-atatattgtgaagattggcattgctttacatttttgcaaatacctttaatatttgg-ttattagataa----tacattctcatatctgcttctggatttagtctgctatggtagtca---tag-gcttctagaaaagcttactgtacacttattagcaaaagaaaatgaaaagag-aaatatcatctcagtgttactacaaaaataga-ttcatttcttgaaccagctaaaagaatctcagaggtccacacctcat i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20810158 871 + 189454096 AGGtatagtggagactgctaggtaattccccaatttttacttttgtttctttttgcatacatagttgggctgtatttcccagttttcaattccattggatttggccataaaacccagttctagttcatgggatgttagtgaatgtaatgaaagagatttctgggccaagctaataaaa-atgccccacttttgctcctcggcactggtttcctttttctagggtactgggaggttagtatcttctagggcaaatgtgaaagtcatgcattgaagatggTTAACC-------------------------------------------------------TGAACATCCACTTAGACAATTAGATGAGAGAGAAATATATCTCTGTGTGGAAAGTTAACAACAAGGCAGGCTCTACTTAATACTACAGGTTATCCTACCTTATTGAATGCACTAGGTcagcatttctcaaacattttagtctttggacctattgatactttccaaaattatcaaagattcct--aagaacttttgttaatgtgggatttatc--tggctatttaccttattagaatttaaactgagaaagtgtta----acatatttattcattttaagat-------acaaagttagtacatgttaacataaatatcatttttg---aaaaaatacgtaaattttccaacataaaaaaac-atatattgtgaagattggcattgctttacatttttgcaaatacctttaatatttgg-ttattagataa----tacattctcatatctgcttctggatttagtctgctatggtagtca---tag-gcttctagaaaagcttactgtacatttattagcaaaagaaaatgaaaagag-aaatatcatctcagtgttactacaaaaataga-ttcatttcttgaaccagctaaaagaatctcagaggtccacacctcat i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16400787 871 + 178775436 AGGTATAGTGGAGACTGCTAGGTAATTCcccaatttttacttttatctctttttgcACACATAGTTGGGCTGTATTTCCCAGTTTTCAACTCCATTGGATTTGGCCATAAAACCCAGTTCTAGTTCATGGGATGTTAGTGAATGTAATGAAAGAGATTTCTGGGCCAAGCTAATAAAA-ATGCCCCACTTTTGCTCCTCGGCACTGGTTTCCTTTTTCTAGGGTACTGGGAGGTTAGTATCTTCTAGGGCAAATGTGAAAGTCATGCATTGAAGATGGCTAACC-------------------------------------------------------TGAACATCCACTTAGACAATtagatgagagagaaataaatgtctgtgtgGAAAGTTAACAATAAGGCAGGCTCTACTTAATACTACAGGTTATCCTACCTTATTGAATGCACTAGGTCAGCATTTCTCAAACATTTTAGTCTTCGGACCTATTGATACTTTCCAAAATTATCAAAGATTCCT--AAGAACTTTTGTGAATGTGGGATTTATC--TGGCTATTTACCTTATTAGAATTTAAACTGAGAAAGTGtta----acatatttattcattttaagat-------ACAAAGTTAgtacatgttaacataaatatcatttttg---aaaaaatgcGTAAATTTTCCAACATaaaaaaaC-ATATATTGTGAAGATTGGCattgctttacatttttgcaaatacCTTTAATATTTGG-TTATTAGATAA----TacattctcatatctgcttctggaTTTAGTCTGGTATGGTAGTCA---TAG-GCTTCTAGAAAAGCTTACTGTACATTtattagcaaaagaaaatgaaaagaa-aaatatcatctCAGTGTTACTACAAAAATAGA-TTCATTTCTTGAACCAGCTAAAAGAATCTCAGAGGTCCACACCTCAT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19884578 874 - 48547382 AGGtatagtggagactgctaggtaattccccaatttttacttttgtttctttttacacacatagttgggctgtatttcccagttttcaattccattggatttggccataaaacccagttctagttcatgggatgttagtgaatgtaatgaaagagatttctgggccaagctaataaac-atgccccacttttgctcctcagcactggtttcctttttctagggtactgggaggttagtatcttctagggcaaatgtgaaagtcatgcattgaagatggcTAACC-------------------------------------------------------TGAACATCCACTTAGACAATTAGATGAGAGAGAAATAAATCTCTGTGTGGAAAGTTAACAACAAGGCAGGCTCTATTTAATACTACAGGTTATCCTACCTTATTGAATGCACTAGGTcagcatttctcaaacattttagtcttcggacctgttgatacttttaaaaatcatcaaagatttttaaaagaacttttgttaaagtaggttttatc--tggctat-----ttattagaatttaaactgagaaagtgtta----acatatttattcattttaagat-------acaaagttagtacatgttaacataaatatcatttttg---aaaaaatatgtaaattttccaacataaaaaaac-atatattgtgaagattggcattgctttacatttttgcaaatacctttaatatttggcttattagaaaatacttacattctcatatctgcttctggatttagtctgctatgatagtca---tagagcttctagaaaagctcactgagcatttattagcaaaagaaaaagaaaagag-aactatcatctcagtgttactacaaaaataga-ctcatttgttgaaccagctaaaagaatctcagaggtccacaccacat i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21242631 871 - 190850796 AGGtatagtggagacttctagctaatccccaaaatttta--tttgtttctttttagacacatcactgggctatgttttccagtcttcagttccaatggatttggccataaaactcagttccagttgatgggatgtcagtgaatgcaatg-aagagatttctgggcccaggtaataaaa-atgccccacttttggtccttggtatttgtttcctttttccagggtactaggaggttaatctcttctagggaaaatgtaaaagtcatacattgaagatagcTAACC-------------------------------------------------------TGAACATCCACTTCGACAATTAGATGAGAGAG------ATCTTTGTATGGAAA-TCAATAACAAGGTAGTCTCTATTTACTACTACAGGTTATCCTACTTTATTGAATGCCCTAGGCcagcatttctcaaactttttagtcttagtacctactgacattcttaaaaattatcaaagattcct--gagaatttttgttaatgtgggttttgcc--ttgatatttactttattcaaatttaaaccaagaaa---ttg----acatatttattcattttaagataacaataataaagttagtatatgttaacataaatatcattgttg---aaaaat-atgtaaattttccaaaataaaacaat-atatactgtgaagattgccattcctttacatttttgcaaatacctttaatatttggcttattagaaaataattacggtctcatatctgcttctgcatttagtctgctatgacacccatcatagagcttttcaaaagcttcact--acatttattagcaaaacagaatgaaaacag-aaatatcatctcagtgttactacaaaaacaga-ttgatttcttgaaccaactaaaagaatctcagagGGCTACATCTCAT i calJac3.chr3 C 0 I 231 s canFam3.chr3 3816658 876 - 91889043 AGGCATGAGagagactgttagctattcctgaagattat-tttttgtttctgcctgaatacatagctgagctacatttcccggcctttaatgcacttggcttaggccatgaaa--cagttccagctaatggaatgtgagtgaacatgctaagtgatacttctgggttctcc----aaca-attccccacttcagttcctctgtgctcg-ttcccttctccaggagactgagatgtcagcatc----agagcaaatttgaaagtcaag-gttgaatatggcaaagccacaccattatcttggattcctgaactattgtgtgCTGGGACTTACCCCGCTAAATGAATACCTACTTACATAATTTGTTGAGAGAGACATA-GTCTCTGTGT--AAAGTTAACAGCAAGGTAGGCTCTGTTTACTACTGTAGATTAACCCACCTTAATGAAGGC---AGACGagcatttctcaaacattttagtgcca--------tgacattcttaaaaattatt---gactcca--aggagcttctgtttatgtgggttttatctgttgctatttcgcatcttagaacttaaattgggacattttaaaaatatatatttgttgatttcaaaat-------agtaattt--tatatgc-----------tcatttcca---aaacaa-----------------acagaaaact----tagtgaaaagaatgacactgctttagattttggcaactatctctgatatctctcttaataaatgataaccgaattctcatatctgcatctgcatttaacgtcttatatcacacatcatgggatttctggaacatcctacattgtattaattaatgaatggaaaagaaaagggaaaatataatcttactgttactatgaaaacagattttatttcttgaactatgtgaaaaagt---ataagctcccaccctt- i canFam3.chr3 I 1 C 0 e mm10.chr5 49227954 4093 + 151834684 I a score=280480.000000 s hg38.chr4_KI270790v1_alt 119949 92 + 220246 taatgatcacattttaagaattactgCACTAGACCTTTGACAACAGAAGT-------------------------------------------------TACTATGTTATCCACTATGTAGTATTTAAAATTCTTAGGAAA------------------------------------- s panTro4.chr4 21506455 92 + 193495092 taaggatcacattctaagaattactgCACTAGACCTTTGACAACAGAAGT-------------------------------------------------TACTATGTTATCCACTATGTAGTAtttaaaattcttaggaaa------------------------------------- i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21684076 92 + 198332218 taatgatcacattttgagaattactgCACTAGACCTTTGACAATAGAAGT-------------------------------------------------TACTATGTTATCCACTATGTAGTATTTAAAATTCTTAGGAAA------------------------------------- i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20296772 92 - 85365473 taataatcacattttaagaattactCCACTAGACCTTTGACAATAGAAGT-------------------------------------------------TACTATGTTATTCATTATGTAGTAtttaaaatttttaggaaa------------------------------------- i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16761715 92 + 184069350 taatgataacattttaagaattactgCACTTGACCTTTGACAATAGAAGT-------------------------------------------------TACCATGTTATCCACTATGTAGTATTTAAAATTCTCAGGAAA------------------------------------- i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20811029 92 + 189454096 taatgataacattttaagaactactgCACTTGACCTTTGACAATAGAAGT-------------------------------------------------TACCATGTTATCCACTATGTAGTATTTAAAATTCTCAGGAAA------------------------------------- i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16401658 92 + 178775436 TAATGATAACATTTTAAGAATTACTGCACTTGACCTTTGACAATAGAAGT-------------------------------------------------TACCATGTTATCCACTATGTAGTATTTAAAATTCTCAGGAAA------------------------------------- i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19885452 92 - 48547382 taatgatcacattttaagaattactgCACTTGACCTTTGACAGTAGAAGT-------------------------------------------------TACCATGTTATCCACTATGTAGTATTCAAAATTCTTAGGAAA------------------------------------- i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21243733 141 - 190850796 TAATGATCACATTTTAAGAATTACTACACTTGACTTTTGACAACGGAAGTTACCATTTTTCTCTGCAGTCTTTCATGAAATAAAAAAAAGTAAATAAGCTACCATTTTATCCACTATGTAGTAtttaaaattcttaggaaa------------------------------------- i calJac3.chr3 I 231 C 0 s canFam3.chr3 3817534 125 - 91889043 cactgatcatagtttaagatccactgCACTAGGTTTCTGACAATGGAGCC-------------------------------------------------TCCAA----ATTTATTATGTAGTATGTAAAATTATTATGAAAGCTATGGATTATTTTCTCTAAAATTGAACATAAGAAA i canFam3.chr3 C 0 I 326 e mm10.chr5 49227954 4093 + 151834684 I a score=64038.000000 s hg38.chr4_KI270790v1_alt 120041 49 + 220246 GCTACGGGTTCTTTCCTCaa----aa---aaaaaaaaaaaaaaaa--------aaa----aCACATAC s panTro4.chr4 21506547 45 + 193495092 gctatgggttctttcctcaa----aa---aaaaaaaaaaaaaaaa----------------cacataa i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21684168 57 + 198332218 GCTATGGGTTCTTTCCTCaa----aa---aaaaaaaaaaaaaaaaaaaaaaaaaaa----aCACGTAA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20296864 42 - 85365473 gctatgggttcttctctcaa----aa---aaaaaaaaaaaaa-------------------cacgtaa i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16761807 55 + 184069350 GCTATGGG---TTTTCTCAAaaacaa---acaaacaaacaaacaa---acaaaaaa----acaCATAA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20811121 51 + 189454096 GCTACGGG---TTTTCTCaa----aa---acaaacaaacaaacaa---acaaaaaa----acaCATAA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16401750 51 + 178775436 GCTATGgg---ttttctcaa----aa---acaaacaaacaaacaa---acaaaaaa----acacgtaA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19885544 52 - 48547382 GCTATGGG---TTTTCTCAA----aa---acaaacaaacaaac------caaaaaacCGCATACATAA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21243874 49 - 190850796 gctatggattcttttctcca----aacatacacacatacacgcac---------------acacacaa i calJac3.chr3 C 0 C 0 e mm10.chr5 49227954 4093 + 151834684 I e canFam3.chr3 3817659 326 - 91889043 I a score=395601.000000 s hg38.chr4_KI270790v1_alt 120090 133 + 220246 ATACATACTTT-TAT---------GCCTAATTTAAGTGGTTTC-----------------------CTAAAAC-CCCTGAATCTCATTCAATGGAAGTCAAAAACTTTCTCTAGAGTAGATGGCATGGCTTTTTTTAACTTTCATGTATC-TTCTACTATACTGAGAA s panTro4.chr4 21506592 133 + 193495092 gtacatacttt-tat---------gcctaatttaagtggtttc-----------------------ctaaaac-ccctgaatctcattcaatggaAGTCAAAAACTTTCTCTAGAGTAGATGGCATGGCTTTTTTTAACTTTCATGTATC-TTCTACTATACTGAGAA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21684225 134 + 198332218 GTACATACTTT-TAT---------GCCTAATTTAAGTGGTTTC-----------------------CTAAAAC-CCCTGAATCTCATTCAATGGAAGTCAAAAACTTTCTCTAGAGTAGATGGCATGGCTTTTTTTAACTTTCATGTATCTTTCTACTATACTGAGAA i ponAbe2.chr4 C 0 I 322 s nomLeu3.chr20 20296906 131 - 85365473 gtacatacttt-tat---------gcctaatttaagtggtttc-----------------------ctaaaac-ccctgaatctcattcaatggaagtcaaaaac--tcTCTAGAGTAGATGGCATGGCTTTATTTAACTTTCATGTATC-TTCTACTATACTGAGAA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16761862 133 + 184069350 GTACATACTTT-TAT---------GCCTAATTTAAGTGGTTTC-----------------------CTAAAAC-CCCTGAATCTCATTCAACAGAAGTCAAAAACTTTCTCTAGAGTAGATGGCATGACTTTTTAAAACTTTCATATATC-TTCTACTACACTAAGAA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20811172 133 + 189454096 GTACATACTTT-TAT---------GCCTAATTTAAGTGGTTTC-----------------------CTAAAAC-CCCTGAATCTCATTCAACAGAAGTCAAAAACTTTCTCTAGAGTAGATGGCATGACTTTTTAAAACTTTCATATATC-TTCTACTACACTAAGAA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16401801 132 + 178775436 GTACATACTTT-TAT---------GCCTAATTTAAGTGGTTTC-----------------------CTAAAAC-CCCTGAGTCTCATTCAACAGAAGTC-AAATCTTTCTCTAGAGTAGATggcatgactttttaaaactttcatataTC-TTCTACTACACTAAGAA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19885596 131 - 48547382 GTACAT--TTT-TAT---------GCCTAATTTAAGTGGTTTC-----------------------CTAAAAT-CCCTGAATCTCATTCAACAGAAGTCAAAAACTTTCTCTAGAGTAGATGGCATGACATTTTTAAACTTTCATGTATC-TTTTACTACACTGAGAA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21243923 133 - 190850796 ataCACAGTTTATAT---------GCCTAATTTAAGTGATTTC-----------------------CTAAAAC-CCCTGTATCTCATTCAGTGGAAATCAGAAACTTTCTCTAGAGTGGGTGGCACGG-TTTTTTTATCTGGTATGTATC-TTCCACTATTTTGAGAA i calJac3.chr3 C 0 C 0 s canFam3.chr3 3817985 161 - 91889043 aaatatatttc-tgtttatgagccacccagtttatgctattttttttttacagcagctcaaaaggactaagataCCACAAGTGTCATTCAATGGAAGTCAAAAACTCCTTCTAGGGCAGATGCCATATATTTTTCA-----CCTTGTATC-TCCTACAGTACTGGGAA i canFam3.chr3 I 326 C 0 e mm10.chr5 49227954 4093 + 151834684 I a score=1969333.000000 s hg38.chr4_KI270790v1_alt 120223 622 + 220246 ATGTACACTTTATACTTTATATAATGTCAATAAACA-TACGCtagaaacagaaaacattagaa-ctgggaggatcttcagagatcatac-tgtgaaattttctccttttcacatttagactgtgcaaa-cctagggaaggaaagtgactacctcaaggccacaGTGAACATGATAAAGAAAGGATGCAGAAATAAAAACACAATTTGCAAAGTTATGACACATCACTCATTCA---------TATTTAAAATCTTTAAGTGATATAAAGTTATACATTCAAAGAGACAAAAA-TATTTTTAGGATTTTGGAATTTAAGGAGACATATAAGCCATCTATTTAAATCATCTCATTTGTAAGAAAAACCTACAGGATCTCAGAAGGATTA------------------------------------AACTGCTTTGCTAAATTTACAAAATGGTAAA-----------GACCTGGTTTGCCAACTCTGAACAGAATATTATAACCAATATATCACATTTCCCTTTAAAGAACTCACA-TTTTATAGTCAATTAATAATCTCCATTTTGAAGCAAATTTATAAGAATAGCAACTGATGCACTGTATT----TAAAAATATAAACAAAATCTTCAGAATACACCTTAATAATCCAGATTACAAAATTGTATTCACTTTATTTTGCTTCTCCAG s panTro4.chr4 21506725 622 + 193495092 ATGTACACTTTATATTTTATATAATGTTAATAAACA-TATGCtagaaacagaaaacattagaa-ctgggaggatcttcagagatcatac-tgtgaaattttctccttttcacatttagactgtgcaaa-cctagggaaggaaagtgactacctcaaggccacaGTGAACATGATAAAGAAAGGATGCAGAAATAAAAACACAATTTGCAAAGTTATGACACATCACTCATTCA---------TATTTAAAATCTTTAAGTGATATAAAGTTATACATTCAAAGAGACAAAAA-TATTTTTAGGATTTTGGGATTTAAGGAGACATATAAGCCATCTATTTAAATCATCTCATTTGTAAGAAAAACCTACAGGATCTCAGAAGGATTA------------------------------------AACTGCTTTGCTAAATTTACAAAATGGTAAA-----------GACCTGGTTTGCCAACTCTGAACAGAATATTATAACCAATATATCACATTTCCTTTTAAAGAACTCACA-TTTTATAGTCAATTAATAATCTCCATTTTGAAGCAAATTTATAAGAATAGCCACTGATGCACTGTATT----TAAAAATATAAACAAAATCTTCAGAATACACCTTAATAATCCAGATTACAAAATTGTATTCACTTTATTTTGCTCCTCCAG i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21684681 626 + 198332218 ATGTACACTTTGTATTTTATATAATATCAATAAACAGTCGGCtagaaacagaaaacagtagaacccgggaggatcttcagagatcatacttgggaaatgttctccttttcacatttagactgtgcaaagcctagggaaggagagtgactacctcaaggccacaGTGAACAAGATAAAGAAAGGATGAAGAAATAAAAGCAAAATTTGCAAAGTTATGACACATCACTCATTCA---------TATTTAAAATCTTTAAGTGATATAAAGTTATATATTCAAAGAGACAAAAA-TATTTTTAGAATTATGGAATTTAAGGAGACACATAAGCCATCTATTTAAATCATCTCATTTATAAGAAAAACTTACAGGATCGCAGAAGGATTA------------------------------------AACTACTTTGTTAAATTTACAAAATGGTAAA-----------GACCTGGTTTACCAACTCTGAACAGAATATTATAACCACTATATCATATTTCCTTTTAAAGAACTCCCA-GTTTATAGTCAATTAATAATCTCCATTTTGAAGCAAATTTATAAGAATAGCAACTGATGCACTGTATT----TAAAAATAAAAACAAAATCTTCAGAATACTCCTTAATAATCCAGATTACAAAATTTTGTTCACTTTATTTTGCTTCTCCAG i ponAbe2.chr4 I 322 C 0 s nomLeu3.chr20 20297037 622 - 85365473 AAGCATACTTTATATTTTATATAATGTCAATAAACA-TACGCtagaaacagaaaacattagaa-ctggaaggatcttcagagatcatac-tgtgaaattttctccttttcacatttagactgtgcaaa-cctagggaaggagagtgactacctcaaggccacaGTGAACATGATAAAGAAAGGATGCAGAAATAAAAACACAATTTGCAAAGTTATGACACATCACTCATTCG---------TATTTAAAATCTTTAAGTGATATAAAGTTATACATTCAAAGAGACAAAAA-TGTTTTTAGAATTTTGGAATTTAAGGAGACATATAAGCCATCTATTTAAATCATCTCATTTATAAGAAAAGCCTACAGGATCTCAGAAGGACTA------------------------------------AACTACTTTGCTAAATTTACAAAATGGTAAA-----------GACCTGGTTTACCAACTCTGAACAGAATATTATAACCACTATATCATATTTCCTTTTAAAGAACTCCCA-GTTTATAGTCAATTAATAATCTCCATTTTGAAGCAAATTTATAAGAATAGCAACTGATGCACTGTATT----TAAAAATAAAAACAAAATCTTCAGAATACACCTTAATAATCCAGATTACAAAATTTTATTCACTTCATTTTGCTTCTCCAG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16761995 662 + 184069350 ACTTACACTTTATATTTCGTATAATG----TAAAGA-TACACtagaaacagaaaaccttagaa-ctggaaggatcttcagagatcatat-tgtgcaaatttctccttttcacatttagactgtgcaaa-cctagggaagatgagtgactacctcaaggccacaATGAACATGATAAAGAAAGGATGCAGAAATAAAAACACAATCTGCAAAGCTATGACACATTATTCATTCA---------TATTTAAAATTTTTAAGTGATATAAAGTTATACATTCAAACAGACAAAAA-TATTT----AAATTTGGAATTTAAGGAGACATATAAGCCATCTACTTAAATTATCTCATTTATAAGAAAAACCTACAGGATCTCAGAAGGATTAAACTATTTTGCTAAATTTACAAAATGGTAAGGATTAAACTATTTTGCTAAATTTACAAAATGGTAAATTTACAAAATGGACCTGGTTTACCAACTCTGAACAGAATATTATAACCACTA-ATCATATTTCCTTTTAAAGAACTCACA-TTTTATAGTCAATTAATAATCTCCATTTTGAAGCAAATTTATAAGTATAGCAAGTGATACACCGTATT--AAAAAAAACAACAACAAAATCTTTAGAATACACCTTAATAATCCAGGTTACAAAATTCTATTCACTTTACTTTGCTTCTCCAG i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20811305 662 + 189454096 ACTTACACTTTATATTTCGTATAATG----TAAAGA-TACACtagaaacagaaaaccttagaa-ctggaaggatcttcagagatcatat-tgtgcaaatttctccttttcacatttagactgtgcaaa-cctagggaagatgagtgactacctcaaggccacaATGAACATGATAAAGAAAGGATGCAGAAATAAAAACACAATCTGCAAAGCTATGACACATTATTCATTCA---------TATTTAAAATTTTTAAGTGATATAAAGTTATACATTCAAACAGACAAAAA-TATTT----AAATTTGGAATTTAAGGAGACATATAAGCCATCTACTTAAATTATCTCATTTATAAGAAAAACCTACAGGATCTCAGAAGGATTAAACTATTTTGCTAAATTTACAAAATGGTAAGGATTAAACTATTTTGCTAAATTTACAAAATGGTAAATTTACAAAATGGACCTGGTTTACCAACTCTGAACAGAATATTATAACCACTA-ATCATATTTCCTTTTAAAGAACTCACA-TTTTATAGTCAATTAATAATCTCCACTTTGAAGCAAATTTATAAGTATAGCAAGTGATACACCGTATT--AAAAAAAACAACAACAAAATCTTTAGAATACACCTTAATAATCCAGGTTACAAAATTCTATTCACTTTATTTTGCTTCTCCAG i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16401933 632 + 178775436 ACGTACACTTTATATTTCGTATAATG----TAAACA-TAcactagaaacagaaaaccttaGAA-CTGGAAGGATCTTCAGAGATCATAT-TGTGCAAATTTCTCCTTTTCACATTTAGACTGTGCAAA-CCTAGGGAAGGTGAGTGACTACCTCAAGGCCACAATGAACATGATAAAGAAAggatgcagaaataaaaacacaatctGCAAAGCTATGACAcattattcattca---------tatttaaaatctttaagtGATATAAAGTTATACAttcaaacagacaaaaa-tatttttagaaatttggaATTTAAGGAGACATATAAGCCATCTacttaaattatctcatttataagAAAAACCTACAGGATCTCAGAAGGATTA------------------------------------AACTATTTTGCTAAATttacaaaatggtaaatttaCAAAATGGACCTGGTTTACCAACTCTGAACAGAATATTATAACCACTa-atcatatttccttttaaagaacTCACA-TTTTATAGTCAATTAATAATCTCCATTTTGAAGCAAATTTATAAGTATAGCAAGTGATACaccgtattaaaaaaaaaaaaacaacaaaatctttaGAATACACCTTAATAATCCAGGTTACAAAATTCTATTCACTTTATTTTGCTTCTCCAG i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19885727 620 - 48547382 ACTTACACTTTATATTTTATATAATG----TAAAGA-TACACtagaaacagaaaaccttagaa-ctggaaggatcttcagagatcatat-tgtgcaaatttctccttttcacatttagactgtgcaaa-cctagggaaggtgagtgactacctcaaggccacaGTAAACATGATAAAGAAAGGATGCAGAGATAAAAACACAATTTGCAAAGCTATGACACATTACTCATTCA---------TATTTAAAATCTTTAAGTGATATAAAGTTATACATTCAAACAGACAAAAA-TAGTTTTAGAAATTTGGAATTTAAGGAGACACATAAGCCATCTATTTAAATTATCTCACTTATAAGAAAAACCTACAGGATCTCAGAAGGATTA------------------------------------AACTATTTTGCTAAATTTACAAAATGGTAAA-----------GACCTGGTTTACCAACTCTGAACAGAATATTATAACCACTA-ATCATATTTCCTTTTAAAGAACTCACA-TTTTATAGTCAATTAATAATCTCCATTTTGAAGGAAATTTATAAGAATAGCAAGTGATACACTGTATT-TaaaaaaaaaaaaaacaaaaTCTTCAGAATACACTTTAATAATCCAGGTTACAAAATTCTATCCACTTTATTTTGCTTCTCCAG i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21244056 624 - 190850796 ACATACACTTTATATTTTATATCGTATCAATAAACA-TACACtagaaacagaaaacagtagta-ctggaaggatcttcacagatcatat-cgtaaaaatttctccttttcacatttagacctt------cctagggaaggtgagtgactacctcaaggccacaATGAACATGATAAAGAAAGGATGGAAAAATAAGAAC--AATTTGCAAAGTTATAATACATCATTCATTCATGTGAGCATTATTTGAAATCTTTAACTGATATAAAGTTATACATTCAAAGACACAAAAC-TATTTTTAGAATTTTAGAATTTAAGGAGACATAGAAGCTATCTATTTAAATTATCTCATTTATAAGAAAAACCTCCAGGATCTCAGAAAGATTA------------------------------------AACTACCTTGCTAAATATACGAAAGGGTAAA-----------GACATGGTTTACCAACTCTGAACAAAATGTTATAACCACTATATCACATTTCCTTTCATATAACTCACA-TTTTATAGTCAATTAATAATTTCCATTTTGAGGCAAATTTATAAGAATAGCAACTGATGCACTGCATT----CAAAAATAAAAGCAAAATCATCAGAATACACTTTCATAATCCAGATCACAAAATTTTATTCACTTTATTTTACTTTTCCCC i calJac3.chr3 C 0 C 0 s canFam3.chr3 3818146 626 - 91889043 CCACACAACCTATACTTTCTATGATTTCAATAAGTG-TACACtagaaac--aaaatatgagaa-ctggaaggatctttcaagatcattt-tgttcaaatttctaatttttacatccagactgtgcaaa-cctggggacggtaagtaattccct-gaggccacaacgaatgtgacaaaTGAACAATGTAGAAATATAAATGTAGTCTGCAAAGTTAGCACCCATTGTTCGTGAATGTGAGACTTATTTGAAAACTTTAAGTGATATAAATCTATACCTTCAAAGACTCAAAAAGTTTTTTtagaagtttagag--caaggagacatg-agctcattgacctaaattatctcattcataggaaaaagctacagggtctcagagagagaa------------------------------------aatcacttctctaatttcacaAAATGATAAA-----------GACCTGATTTACCAATTCTGAATTGACTGTTATTACTGCTATATCATATTGCTTTGGAAATAATTCACATTTTTGTAGTAGTTCGATAATTCACATTTTGAAGCAAACAAATAAGAATAGCAACTCGTGTGCTGTATC----CAAAAATACAAGCAAAA-CTTCCGGATACTCCATAATAATCTAGGTTACAAATCTAAATCACTTCTAGCCAGCCTTTTTAA i canFam3.chr3 C 0 C 0 e mm10.chr5 49227954 4093 + 151834684 I a score=1509823.000000 s hg38.chr4_KI270790v1_alt 120845 385 + 220246 ATTT-AAAAATGAAGAGAGCAAAGGCTGGGAAAGTTAGTCATCTAAAATTCTATCTTCTTTTGTCAAAA--CAATATA--ACACAAATATAAAGTTATTTTAAAATAAATTGTTCTGGCAAATTGGTACCCTGACCCA-ACGAGGAGGTTATGAAATCC-----------AGTACCCCTCCATACTTCATTGAAACTTACTCAAATTACTGCAGTAGA-TTTTCCACTCTTGGAAAATGAGCAAATAAATGGCAGCATCCTTTCTAATGTCAATTCTCGACATTCTGATTAAAGTTCTGTTTTAAGTGCCCAGATACATTAAATCAACCCATTGTTTTCCATCCTTACAGATAGCCCAGAGTTCTAGAGAAGGATGGCGACTACAAAGAAATCAATCATCAGG s panTro4.chr4 21507347 385 + 193495092 ATTT-AAAAATGAAGAGAGCAAAGGCTGGGAAAGTTAGTCATCTAAAATTCTATCTTCTTTTGTCAAAA--CAATATA--ACACAAATATAAAGTTATTTTAAAATAAATTGTTCTGGCAAATTGGTACCCTGACCCA-ACGAGGAGGTTATGAAATCC-----------AGTACCCCTCCATACTTCATTGAAACTTACTCAAATTACTGCAGTAGA-TTTTCCACTCTTGGAAAATGAGCAAATAAATGGCAGCATCCTTTCTAATGGCAATTCTCGACATTCTGATTAAAGTTCTGTTTTAAGTGCCCAGATACATTAAATCAACCCATTGTTTTCCATCCTTACAGATAGCCCAGAGTTCTAGAGAAGGATGGCGACTACAAAGAAATCAATCATCAGG i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21685307 385 + 198332218 ATTC-AAAAATGAAGAGAGCAAAGGCTGGGAAAGTTAGTCATCTAAAATTCTATCTTCTTTTGTCAAAA--CAATATA--ACACAAATATAAAGTTATTTTAAAATAAATTGTTCTGGCAAATTGGTACCTTGGCCGA-ACAAGGAGGTTATGAAATCC-----------AGTACCCCTCCATACTTCATTGAAACTTACTCAAATTACTGCAGTAGA-TTTTCCACTCTTGGAAAATGAGCAAATAAATGGCAGCATCCTTTCTAATGGCAATTCTCGACATTCTGATTAAAGTTCTGTTTTAAGTGCCCAGATACATTAAATCGATCCATTGTTTTCCATCCTTACAGATGGCCCAGAGTTCTAGAGAAGGATGGAGACTACAAAGAAACCATTCATCAGG i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20297659 384 - 85365473 ATTT-AAAAATGAAGAGTGCAAAGGCTGGGAAAGTTAGTCATCTAAAATTCTATCTTCTTTTGTCAAAA--CAATATA--ACACAAATGCAAAGTTATTTTAAAATAAATTGTTCTGGCAAATTGGTACCTTGGCCCA-ACAAGGAGGTTATGAAATCC-----------AGTACCCCTCCATACTTCATTGAAACTTACTCAAATTTCTGCAGTAGA-TTTTCCATTCTTGGGAAATGAGCAAATAAATGGCAGCATCCTTTCTAATG-CAATTCTCGACATTCTGATTAAAGTTCTGTTTTAAGTGCCCAGATACATTAAGTCAATCCATTGTTTTCCATCCTTACAGATAGCCCAGAGTTCTAGAGAAGGATGGAGACTACAAAGAAATCAATCAACAGG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16762657 386 + 184069350 ATTTAAAAAATGAAGAGAGCCAAGACTGGGAAAATTAGTCACCTAAAATTCTATCTTCTTTTGTCAAAA--CAATATA--ACACAAATATAAAGTTATCTTAAAATAAATTGTTCTGGCAAATTGGTACCTCGACCCA-ACAAGGAGGTTATGAAATCC-----------AGTACCTCTCCATACTTCATTGAAACTTACTCAAATTACTGCAGTAGA-TTTTCCGCTCTTGGAAAATGAGCAAGTAAACAGCAGCATCCTTTCTAATGGCAATTCTCGACATTCTGTTTAAAGTTCTGTTTTAAGTGCCCAGATACATCAAATCAATCCATTGTTTTCCATCCTTACAGGCAGCCCAGAGTTCTAGAGAAGGATGGAGACTACAAATAAGTCAATCATCAGG i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20811967 386 + 189454096 ATTTAAAAAATGAAGAGAGCCAAGACTGGGAAAATTAGTCACCTAAAATTCTATCTTCTTTTGTCAAAA--CAATATA--ATACAAATATAAAGTTATCTTAAAATAAATTGTTCTGGCAAATTGGTACCTCGACCCA-ACAAGGAGGTTATGAAATCC-----------AGTACCTCTCCATACTTCATTGAAACTTACTCAAATTACTGCAGTAGA-TTTTCCACTCTTGGAAAATGAGCAAGTAAACAGCAGCATCCTTTCTAATGGCAATTCTCGACATTCTGTTTAAAGTTATGTTTTAAGTGCCCAGATACATCAAATCAATCCATTGTTTTCCATCCTTACAGGCAGCCCAGAGTTCTAGAGAAGGATGGAGACTACAAATAAGTCAATCATCAGG i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16402565 386 + 178775436 ATGTAAAAAATGAAGAGAGCCAAGACTGGGAAAATTAGTCACCTAAAATTCTATCTTCTTTTGTCAAAA--CAATATA--ACACAAATATAAAGTTAtcttaaaataaattgttctggCAAATTGGTACCTCGACCCA-ACAAGGAGGTTATGAAATCC-----------AGTACCTCTCCATACTTCATTGAAACTTACTCAAATTACTGCAGTAGA-TTTTCCACTCTTGGAAAATGAGCAAGTAAACAGCAGCATCCTTTCTAATGGCAATTCTCGACATTCTGTTTAAAGTTCTGTTTTAAGTGCCCAGATACATCAAATCAATCCATTGTTTTCCATCCTTACAGGCAGCCCAGAGTTCTAGAGAAGGATGGAGACTACAAATAAGTCAATCATCAGG i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19886347 388 - 48547382 ATTTAAAAAATGAAGAGAGCCAAGATGGGGAAAATTAGTCACCTAAAATTCTATCTTCTTTTGTCAAAACTCAATATA--ACACAAATATAAAGTTATCTTAAAATAAATTGCTCTGGCAAGTTGGTACCTCGACCCA-ACAAGGAGGTTATGAAATCC-----------AGTACCTCTCCATACTTCATTGAAACTTACTCAAATTACTGCAGTAGA-TTTTCCACTCTTGGAAAATGAGCAAATAAATGGCAGCATCCTTTCTAATGGCAATTCTCAACATTCTGATTATAGTTCTGTTTTAAGTGCCCAGATACATCAAATCAATCCATTGTTTTCCATCCTTACAGGCAGTCCAGAGTTCTAGAGAAGGATGGAGACTACAAATAAGTCAATCATCAGG i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21244680 384 - 190850796 ATTT-AAAACTGAAGAGGGCCAAGGCTGGGAAAATTTGTCATCTAAAATTCTACCTTCCTTTGTCAAAA--CAATATA--AGACAAATATAAAGTTATTTTAAAATAAATTGTTCTGGCAGATTGGTACCTCGACCTG-ACAAGGAGGTTATGAAATGT-----------AGTAACTCTCCATGCTTCATTGAAACTTATTCAAATTACTGCAATAGA--TTTCCACTCTTGGAAAATGAGCAAATAAATGGTAGCATCCTTCCTAATGGCAATTCTCGGCATTCTTATTAAAGTTCTGTTTTAAGTGTCCAGATACATTAAATCAATCCATTGTTTTCCATCCTTACAGACAGCCCAGAGTTCTAGAGAAGGAGGGAGACGATAAAGAAATCAATCTTCAGG i calJac3.chr3 C 0 C 0 s mm10.chr5 49232047 383 + 151834684 ATCT-CCAAACAGAGAGGGAAA-----GAGAGAATAAAGTA---AAAATCACATTTTATTTCAGCAAAA--CAGTGGA--ATAGTTATATAAAAGCATTCTAAATTA------TTTGGCAACTTGGAATCCTGACCCAGAAAGGGAAGCCATGAAATCAAATGCAAATCGAATGCTTCTCCTTGCCTCACTGAAATGGTCTCAAACCACTGCAGTGAATTTTTCTGCTCCTGCAAGATGAGGAAACATAGGGCAGCTTCCTTCCAGATGGCATTTCTCGGCAAGTGTATTGATGTTCTGGGTTAAGTGCTCAGATGCAACAAATCCTTCCACTGTTTCCCACCCTCA-AGGAAGCTCAGAGTTCCTGACCAGGATGACAACGGCAAGGCAAATTCTCACCAAG i mm10.chr5 I 4093 I 37 s canFam3.chr3 3818772 387 - 91889043 AACC-CAAACCTAAGAGATCTGAAGCTGGGAAAATTAGTAACCTAGAATTTCATTTTCTTTTGTCACAA--CACTAGAACACACATATATAAAGTTCTTCTAAAATAAATTGTTCTGGCACATTGGCACCTTGACCCA-ACAAGCAGGTCATGAAATCC-----------AGCGCCCTTCCATACTTCATCGAAACTTATTCAAATCGCTGTAATAGA-TTTTCTGCTCTTGGGAAATGAGCACATAAATGGCAGCATCCTTTCTAATGGCAATTCTCGACATTCTTATTAAAGTTCTGTGTTAAGTGCCCAGATACATTAAATCAATCCATTGTTTTCCATCTGCACAGACAGCCCAGAGTTCTGGAGAGGAACAGAGGCCGCAAGGAAATCAATCATCAGA i canFam3.chr3 C 0 C 0 a score=172384.000000 s hg38.chr4_KI270790v1_alt 121230 46 + 220246 ATGTGCTTCTTTTAACACATAATGCTGTTGGTTAATTGGGTTTTTT s panTro4.chr4 21507732 46 + 193495092 ATGTGCTTCTTTTAACACATAATGCTGTTGGTTAATTGGGTTTTTT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21685692 46 + 198332218 ATGTACTTCTTTTAACACATAATGTTGTTGGTTAATTGGGTTTTTT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20298043 46 - 85365473 ATGTGCTTCTTTTAACACATAATGCTGTTGGTTAATTGGGTTTTTT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16763043 46 + 184069350 ATGTGCTTCTTTTAACACACAATGCTGTTGGTTAATTGGGTTTTTT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20812353 46 + 189454096 ATGTGCTTCTTTTAACACACAATGCTGTTGGTTAATTGGGTTTTTT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16402951 46 + 178775436 ATGTGCTTCTTTTAACACACAATGCTGTTGGTTAAttgggtttttt i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19886735 46 - 48547382 ATGTGCTTCTTTTAACACATAATGCTGTTGATTAATTGGGTTTTTT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21245064 44 - 190850796 ATGTGCTTCTTTTAACACATAATGCTGTTGGTTAATTGGGTTTT-- i calJac3.chr3 C 0 C 0 s canFam3.chr3 3819159 44 - 91889043 ATGTGCTTCTTTTAACACATTATACTCTTGGTTAATTGGGTTTT-- i canFam3.chr3 C 0 C 0 e mm10.chr5 49232430 37 + 151834684 I a score=1883.000000 s hg38.chr4_KI270790v1_alt 121276 1 + 220246 g s panTro4.chr4 21507778 1 + 193495092 g i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21685738 1 + 198332218 G i ponAbe2.chr4 C 0 C 0 s rheMac3.chr5 16763089 1 + 184069350 G i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20812399 1 + 189454096 G i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16402997 1 + 178775436 g i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19886781 1 - 48547382 G i chlSab2.chr27 C 0 C 0 s canFam3.chr3 3819203 1 - 91889043 A i canFam3.chr3 C 0 C 0 e mm10.chr5 49232430 37 + 151834684 I e calJac3.chr3 21245108 0 - 190850796 C e nomLeu3.chr20 20298089 0 - 85365473 C a score=3822.000000 s hg38.chr4_KI270790v1_alt 121277 2 + 220246 aa s panTro4.chr4 21507779 2 + 193495092 aa i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21685739 2 + 198332218 AA i ponAbe2.chr4 C 0 C 0 s rheMac3.chr5 16763090 2 + 184069350 AA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20812400 2 + 189454096 AA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16402998 2 + 178775436 aa i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19886782 2 - 48547382 AA i chlSab2.chr27 C 0 C 0 e mm10.chr5 49232430 37 + 151834684 I e calJac3.chr3 21245108 0 - 190850796 C e canFam3.chr3 3819204 0 - 91889043 C e nomLeu3.chr20 20298089 0 - 85365473 C a score=546.000000 s hg38.chr4_KI270790v1_alt 121279 1 + 220246 a s panTro4.chr4 21507781 1 + 193495092 a i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21685741 1 + 198332218 A i ponAbe2.chr4 C 0 C 0 s papAnu2.chr5 16403000 1 + 178775436 a i papAnu2.chr5 C 0 C 0 e mm10.chr5 49232430 37 + 151834684 I e chlSab2.chr27 19886784 0 - 48547382 C e macFas5.chr5 20812402 0 + 189454096 C e rheMac3.chr5 16763092 0 + 184069350 C e calJac3.chr3 21245108 0 - 190850796 C e canFam3.chr3 3819204 0 - 91889043 C e nomLeu3.chr20 20298089 0 - 85365473 C a score=2292.000000 s hg38.chr4_KI270790v1_alt 121280 8 + 220246 gaatctgg s panTro4.chr4 21507782 8 + 193495092 gaatctgg i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21685742 8 + 198332218 GAATCTGG i ponAbe2.chr4 C 0 C 0 e mm10.chr5 49232430 37 + 151834684 I e chlSab2.chr27 19886784 0 - 48547382 C e macFas5.chr5 20812402 0 + 189454096 C e rheMac3.chr5 16763092 0 + 184069350 C e calJac3.chr3 21245108 0 - 190850796 C e canFam3.chr3 3819204 0 - 91889043 C e papAnu2.chr5 16403001 0 + 178775436 C e nomLeu3.chr20 20298089 0 - 85365473 C a score=78501.000000 s hg38.chr4_KI270790v1_alt 121288 861 + 220246 aaagatccatcaaaaagtgggcgaaggacatgaacagacacttctcaaaagaagacatttatgcagccaaaaaacacatgaaaaaatgctcatcatcactggccatcagagaaatgcaaatcaaaaccacaatgagataccacctcacaccagttagaatggcaatcattaaaaagtcaggaaacaacaggtgctggagaggatgtggagaaataggaacacttttacactgttcgtgggactgtaaactagttcaaccattgtggaagtcagtgtggcgattcctcagggatctagaactggaaataccatttgatgcagccatcccattactgggtatatacccaaaggactataaatcatgctgctataaagacacatgcacacgtatgtttattgcggcattattcacaatagcaaagacttggaaccaacccaaatgtccaacaatgatagactggattaagaaaatgtggcacacatacaccatggaatactatgcagccataaaaaatgatgagttcatgtcctttgtagggacatggatgaaattggaaatcatcattgtcagtaaactatcacaagaacaaaaaaccaaacaccacatattctcactcataggtgggaattgaacaatgagatcacatggacacaggaaggggaatatcacactctggggactgttgtggggtggggggaggggggagggatagcattaggtgatatacctaacgctagatgacgagttagtgggtgcagcgcaccagcatgggcacatgtatacatatgtaactaacctgcacaatgtgcacatgtaccctagaacttaaagtataataaaaaaaaaGGAAAAAAAAAAAA--- s panTro4.chr4 21507790 863 + 193495092 aaagatccatcaaaaagtgggcaaaggacatgaacagacacttctcaaaagaagacatttatgcagccaaaaaacacatgaaaaaatgctcatcatcactggccatcagagaaatgcaaatcaaaaccacaatgagataccacctcacaccagttagaatggcaatcattaaaaagtcagtaaacaacaggtgctggagaggatgtggagaaataggaacacttttacactgttggtgggactgtaaactagttcaaccattgtggaagtcagtgtggcgattcctcagggatctagaactggaaataccatttgatgcagccatcccattactgggtatatacccaaaggactataaatcatgctgctataaagacacatgcacacgtatgtttattgcggcattattcacaatagcaaagacttggaaccaacccaaatgtccaaagatgatagactggattaagaaaatgtggcacacatacaccatggaatactatgcagccataaaaaatgatgagttcatgtcctttgtagggacatggatgaaactggaaatcatcattgtcagtaaactatcacaagaacaaaaaaccaaacaccacatattctcactcataggtgggaattgaacaatgagatcacatggacacaggaaggggaatatcacactctggggactgttatggggtggggggaggggggagggatagcattaggtgatatacctaatgctagatgacaagttagtgggtgcagcgcaccagcatgg-cacatgtatacatatgtaactaacctgcacaatgtgcacatgtaccctaaaacttaaagtataatttaaaaaaaggaaaaAAAAAAAAAAA i panTro4.chr4 C 0 C 0 e mm10.chr5 49232430 37 + 151834684 I e chlSab2.chr27 19886784 0 - 48547382 C e macFas5.chr5 20812402 0 + 189454096 C e rheMac3.chr5 16763092 0 + 184069350 C e calJac3.chr3 21245108 0 - 190850796 C e canFam3.chr3 3819204 0 - 91889043 C e papAnu2.chr5 16403001 0 + 178775436 C e nomLeu3.chr20 20298089 0 - 85365473 C e ponAbe2.chr4 21685750 0 + 198332218 C a score=600.000000 s hg38.chr4_KI270790v1_alt 122149 1 + 220246 G s panTro4.chr4 21508653 1 + 193495092 G i panTro4.chr4 C 0 C 0 s nomLeu3.chr20 20298089 1 - 85365473 G i nomLeu3.chr20 C 0 C 0 s calJac3.chr3 21245108 1 - 190850796 G i calJac3.chr3 C 0 C 0 e mm10.chr5 49232430 37 + 151834684 I e chlSab2.chr27 19886784 0 - 48547382 C e macFas5.chr5 20812402 0 + 189454096 C e rheMac3.chr5 16763092 0 + 184069350 C e canFam3.chr3 3819204 0 - 91889043 C e papAnu2.chr5 16403001 0 + 178775436 C e ponAbe2.chr4 21685750 0 + 198332218 C a score=16082.000000 s hg38.chr4_KI270790v1_alt 122150 6 + 220246 AAAGAA s panTro4.chr4 21508654 6 + 193495092 AAAGAA i panTro4.chr4 C 0 C 0 s nomLeu3.chr20 20298090 6 - 85365473 AAAGAA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16763092 6 + 184069350 AAAAAA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20812402 6 + 189454096 AAAAAA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16403001 6 + 178775436 aaaaaa i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19886784 6 - 48547382 AAAAAA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21245109 6 - 190850796 AAAGAA i calJac3.chr3 C 0 C 0 s canFam3.chr3 3819204 6 - 91889043 AAATAA i canFam3.chr3 C 0 C 0 e mm10.chr5 49232430 37 + 151834684 I e ponAbe2.chr4 21685750 0 + 198332218 C a score=20106.000000 s hg38.chr4_KI270790v1_alt 122156 5 + 220246 TCTGA s panTro4.chr4 21508660 5 + 193495092 TCTGA i panTro4.chr4 C 0 C 0 s nomLeu3.chr20 20298096 5 - 85365473 TCTGA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16763098 5 + 184069350 TCTGA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20812408 5 + 189454096 TCTGA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16403007 5 + 178775436 tctga i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19886790 5 - 48547382 TCTGA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21245115 5 - 190850796 TCTGA i calJac3.chr3 C 0 C 0 s mm10.chr5 49232467 5 + 151834684 TCTAA i mm10.chr5 I 37 C 0 s canFam3.chr3 3819210 5 - 91889043 TCTGA i canFam3.chr3 C 0 C 0 e ponAbe2.chr4 21685750 0 + 198332218 C a score=2659647.000000 s hg38.chr4_KI270790v1_alt 122161 707 + 220246 TATAAATTTGGACTTGCATTCAAAGTCCCTGACAGAACTACTGCCAAGAAACGGAAAAGTAATGTTTTCCTAAAACTATTACTTGAAAATCTTGAAAGAAATGACTTATGCATAAGTATTTAA----TAGTTTTCCTATGTGAAGAGCTGCCAAGACCCAGGCAG--CACTAAAAAATGGAACCTTTCTATTGTACATTGTACTTAAACACCTGG-TGTGGAGGCCACA--TTTTT-TCCTGCTGTGTGGCAGACAATGAAGTGTAATACTGACATTCTCTCTGAAACTCTCCAAGATCTACTAAATAATTCCCTGTGTAGAGGTAGAAAGTTCACCTAAGAAACTCCCAAAAGG---------------CACATAACCTCAGTCAAG------TATTAGATCTTAC---TTTTTCTAACAGAAGCTAGA--GAGCAAAGAGAAAACAACTGATTTCTTCACAAT-GGCAAATAAGAAATAATATAACAGAAACCATTCTACATGAGTCCAAAGCAGAAGCTACAACAAATTACTTAACACAAA-GCAATAGCAACTGGGCAATTCGACAGAATTGTGAATCCACGCCATGAATTCATGGCATCATTTTACTAAAAAACACAACAGTGGATGGCAGTCTT----TAG-GATATATCTTGATGGACA--CTAGGAAACATTTAATAATAGTTGTTG---------C-CTGTTGTTTTG-CTATTTTTTGTTACT-CAAGCAGCAGCGAAGAGGGGAGTAAACTTG s panTro4.chr4 21508665 706 + 193495092 TATAAATTTGGACTTGCATTCAAAGTCCCTGACAGAACTACTGCCAAGAAATGGAAAAGTAATGTTTTCCTAAAACTATTACTTGAAAATCTTGAAAGAAATGACTTATCCATAAGTATTTAA----TAGTTTTCCTATGTGAAGAGCTGCCAAGACCCAGGCAG--CA-TAAAAAATGGAACCTTACTATTGTACATTGTACTTAAACACCTGG-TGTGGAGGCCACA--TTTTT-TCCTGCTGTGTGGCAGACAATGAAGTGTAATATTGACATTCTCTCTGAAACTCTCCAAGATCTACTAAATAATTCCCTGTGTAGAGGTAGAAAGTTCACCTAAGAAACTCCCAAAAGG---------------CACATAACCTCAGTCAAG------TATTAGATCTTAC---TTTTTCTAACAGAAGCTAGA--GAGCAAAGAGAAAACAACTGATTTCTTCACAAT-GGCAAATAAGAAATAATATAACAGAAACCATTCTACATGAGTCCAAAGCAGAAGCTACAACAAATTACTTAACACAAA-GCAACAGCAACTGGGCAATTCGACAGAATTGTGAATCCACGCCATGAATTCATGGCATCATTTTACTAAAAAACACAACAGTGGATGGCAGTCTT----TAG-GATATATCTTGATGGACA--CTAGGAAACATTTAATAATAGTTGTTG---------C-CTGTTGTTTTG-CTATTTTTTGTTACT-CAAGCAGCAGCGAAGAGGGGAGTAAACTTG i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21685750 706 + 198332218 TATAAATTTGGACTTGCATTCAAAGTCCCTGACAGAACTATTGCCAAGAAATGGAAAAGTAATGTTTTCCTAAAACTATTACTTGAAGATCTTGAAATAAATGACTTATCCATAAGTATTTAA----TAGTTTTCCTACGTGAAGAGCTGCCAAGACCCAGGCAG--CACTAAAAAATGGAACCTTTCTATTGTACATTGTACTTAGACACCTGG-TGTGGGGGCCGCA--TTTTT-TCCTGCTGTGTAGCAGACAATGAAGTGTAATACTGACATTCTCTCTGAAACTCTCCAAAGTCTACTAAATAATTCCCTGTGTAGAGGTAGAAAGTTCACCCAAGAAACTCCCAAAAGG---------------CACATAACTTCAGTCAAG------TATTAGATCTTAC---TTTTTCTAACAGAAGCTAGA--CAGCAAAGAGAAAACAACTGATTTCTTCACAAT-GGCAAATAAGAAATAATATAACAGAAACCATTCTACATGAGTCCAAAGCAGAAGCTACAACAAATTACTTAACACAAA-GCAATAGCAACTGGGCAATTCGACAGAATTGTGGATCCACGCCATGAATTCATGGCATCATTTTACTAAAAAACACAACAGTGGATGGCAGTCTT----TAG-GATATATCTTGATGGACA--CTAGGAAACATTTAATAATAGTTGTTG---------C-CTGTTGTTTTG-CTA-TTTTTGTTACT-CAAGCAGCAGCGAAGAGGGAAGTAAACTAG i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20298101 703 - 85365473 TATAAATTTGGACTTGCATTCAAAGTCCCTGACAGAACTATTGACAAGAAACGGAAAAGTAATGTTTTCCTAAAACTACTACTTGAAAATCTTGAAAGAAATGACTTATCCATAAGTATTTAA----TAGTTTTCCTATGTGAAGAGCTGCCAAGATCCAGGCAG--CACTAAAAAATGGAATCTTTCTATTGTACATTGTACTTAGACACCTGG-TGTGGGGGCCACA--TTTTT-TCCTGCTGTGTGGCAGACAATGAAGTGTAATATTGACATTCTCTCTGAAACTCTCCAAGGTCTACTAAATAATTCCCTGTGTAGAGGTAGAAAGTTCACCTAAGAAACTCCCAAAAGG---------------CACATAACCTCAGTCAAG------TATTAGATCTTAC---TTCTTCTAACAGAAGCTAGA--GAGCAAAGAGAAAACAACTGATTTCTTCACAAT-GGCAAATAAGAAATAATACAACAGAAACCATTCTACATGAGTCCAAAGCAGAAGCTACAACAAA----TTAACACAAA-GCAATAGCAACTGGGCAATTCGACAGAATTGTGAATCCACGCCATGAATTCATGCCATCACTTTACTAAAAAACACAACAGTGGATGGCAGTCTT----TAG-GATATATCTTGATGGACA--CTAGGAAACATTTAATAACAGTTGTTG---------C-CTGTTGATTTG-CTATCTTTTGTTACT-CAAGCAGCAGCGAAGAGGGGAGTAAACTAG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16763103 707 + 184069350 TATAAATTTGAACTTGAATTCAAAGTCCCTGACAGAACTATTGCCAAGAAACGGAAAAGTAATGTTTTCCTAAAACTATTACTTGAAAATCTTGAAAGAAATGACTTATCCGTAAGTATTTAA----TAGTTTTCCTATGTGAAAAGCTGCCAAGACCCAGGCAG--CACTAAAAAATGAAACCTTTGTATTGTACATTGTACTTAGACACCTGG-TGTGGGGGCCGCA--TTTTT-TCCTGCTGTGTGGCAGACAGTGAAGCGTAATATTGACATTCTCTCTGAAACTCTCCAAGGTCTACTAAATAATTCCCTGTGTAGAGGTAGAAGGTTCACCTAAGAAACCCCCAAAAGG---------------CACATAACCTCAGTCAAG------TATTAGATCTTAC---TTTTTCGAACAGACGCTAGA--GAGCAAAGAGAAAACAACTGATTTCTTCACAAA-GGCAAATAAGAAATAATATAACAGAAACCATTCTACATGAGTCCAAAGCAGAAGCTACAACAAATTACTTAGCACAAA-GCGATAGCAACTGGGCAATTCAATAGATTTGTGAATCCACGCCATTGATTCATGGTGTCACTTTACTAAAAAATACAACAGTGGATGGCAGTCTT----TAG-GATATATCGTGAGGGACA--CTAGGAAACATTTAATAATAGTTGTTG---------C-CTGTTGTTTTG-CTATTTTTTGTTACT-CAAACAGCAGCAAAGAGGGGAGTAAACTAG i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20812413 707 + 189454096 TATAAATTTGAACTTGAATTCAAAGTCCCTGACAGAACTATTGCCAAGAAACGGAAAAGTAATGTTTTCCTAAAACTATTACTTGAAAATCTTGAAAGAAATGACTTATCCGTAAGTATTTAA----TAGTTTTCCTATGTGAAAAGCTGCCAAGACCCAGGCAG--CACTAAAAAATGAAACCTTTGTATTGTACATTGTACTTAGACACCTGG-TGTGGGGGCCGCA--TTTTT-TCCTGCTGTGTGGCAGACAGTGAAGCGTAATATTGACATTCTCTCTGAAACTCTCCAAGGTCTACTAAATAATTCCCTGTGTAGAGGTAGAAGGTTCACCTAAGAAACCCCCAAAAGG---------------CACATAACCTCAGTCAAG------TATTAGATCTTAC---TTTTTCGAACAGACACTAGA--GAGCAAAGAGAAAACAACTGATTTCTTCACAAA-GGCAAATAAGTAATAATATAACAGAAACCATTCTACATGAGTCCAAAGCAGAAGCTACAACAAATTACTTAGCACAAA-GCGATAGCAACTGGGCAATTCAATAGATTTGTGAATCCACGCCATTGATTCATGGTGTCACTTTACTAAAAAATACAACAGTGGATGGCAGTCTT----TAG-GATATATCGTGAGGGACA--CTAGGAAACATTTAATAATAGTTGTTG---------C-CTGTTGTTTTG-CTATTTTTTGTTACT-CAAGCAGCAGCAAAGAGGGGAGTAAACTAG i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16403012 707 + 178775436 tataaATTTGAACTTGAATTCAAAGTCCCTGACAGAACTATTGCCAAGAAACGGAAAAGTAATGTTTTCCTAAAACCATTACttgaaaatcttgaaagaaatgaCTTATCCGTAAGTATTTAA----TAGTTTTCCTATGTGAAAAGCTGCCAAGACCCAGGCAG--CACTAAAAAATGAAACCTTTGTATTGTACATTGTACTTAGACACCTGG-TGTGGGGGCCGCA--TTTTT-TCCTGCTGTGTGGCAGACAGTGAAGCGTAATATTGACATTCTCTCTGAAACTCTCCAAGGTCTACTAAATAATTCCCTGTGTAGAGGTAGAAGGTTCACCTAAGAAACCCCCAAAAGG---------------CACATAACCTCAGTCAAG------TATTAGATCTTA----TTTTTCGAACAGACGCTAGA--GAGCAAAGAGAAAACAACTGATTTCTTCACAAA-ggcaaataagaaataatataacAGAAACCATTCTACATGAGTCCAAAGCAGAAGCTACAACAAATTACTTAGCACAAAGGCGATAGCAACTGGGCAATTCAGTAGATTTGTGAATACACGCCATTGATTCATGGTGTCACTTTACTAAAAAACACAACCGTGGATGGCAGTCTT----TAG-GATATATCGTGAGGGACA--CTAGCAAACATTTAATAATAGTTGTTG---------C-ctgttgttttg-ctattttttgttaCT-CAAGCAGCAGCAAAGAGGGGAGTAAACTAG i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19886795 704 - 48547382 TATAAATTTGAACTTGAATTCAAAGTCCCTGACAGAACTATTGCCAAGAAACGGAAAAGTAATGTTTTCCTAAAACCATTACTTGAAAATCTTGAAAGAAATGACTTATCTGTAAGTATTTAA----TAGTTTTCCTATGTGAAAAGCTGCCAAGACCCAGGCAG-----TAAAAAATGAAACCTTTGTATTGTACATTGTAGTTAGACACCTGG-TGTGGGGGCCGCA--TTTTT-TCCTGCTGTGTGGCAGACAGTGAAGCGTAGTATTGACATTCTCTCTGAAACTCTCTGAGGTCTACTAAATAATTCCCTGTGTAGAGGTAGAAAGTTCACCTAAGAAACCCCCAAAAGG---------------CACATAACCTCAGTCAAG------TATTAGATCTTAC---TTTTTCGAACAGAAGCTAGA--GAGCAAAGAGAAAACAACTGATTTCTTCACAAA-GGCAAATAAGAAATAATATGACAGAAACCATTCTACATGAGTCCAAAGCAGAAGCTACAACAAATTACTTAGCACAAA-GAGATAGCAACTGGGCAATTCAATAGATTTGTGAATCCACGCCATTGATTCATGGTGTCACTTTCCTAAAAAACACAACAGTGGATGGCAGTCTT----TAG-GATATATCGTGACGGACA--CTAGGAAACATTTAATAATAGTTGTTG---------C-CTGTTGTTTTG-CTATTTTTTGTTACT-CAAGCAGCAGCAAAGAGGGAAGTAAACTAG i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21245120 712 - 190850796 TATAAATTTGGACTTGCATTCAAAGTCCTTGACAGAACTATTGCGAAGAAATGAAAAAGCAATGTTTTCCTAAAACTATTACTTGAGAATCTTGAAAGAAATGACCCATCCATAAGTATTTAA----TAGTTTTCCTATGTGAAAACCTGCCAAGACCCAGGCAG--CACTAAAAAATGAAACCTTTATATTGTACATTGTACTCAGACACCTGG-TGTGGGGGCTGCATTTTTTT-TCCTGCTGTGTGGCAGACAATGAACTGTAATATTGACATTCTCTCTGAAATTCTCCAAGGTCTACTAAAGAATTCCCTGTGTAGAGGTAGAAAGTTCACCTAAGAACACTCAAAAAGG---------------CACAGAACCTCAGTTGAG------TATTAGATTTTAC---TTTTTCTAACGGAAGCTGGA--GAGTAAAGAGAAAACAACTGATTTCTTCATAAT-GGCAAATCAGAAATAATGTAACATAAACCATTATACATGAGTCCAAAGCAGAAGCTACAACAAATTACTTAACACAAA-GCAATAGCAACTGGGCAATTCGACAGAACTGTGAATCCACGCCATTGATTCATGTTGTCA--TTACTAAAAAACACAACAGAGGATGGCAGTCTTTACCTAG-AATATTTCATGACAGACA--CTTGGAAGCATTTAATAATAGTTGTTG---------CTTTGTTGTTTTG-CTATTTTGTGTTGCT-CAAGTGGCAGGGAAGAGGGGAGTAAACTAG i calJac3.chr3 C 0 C 0 s mm10.chr5 49232472 707 + 151834684 CAGAAATTTAGACTTGAATCCAATGTTCTTGATAGAACTGTTGCCAAGATATGAAAATGAAACGTTTTCCTGAAATGCTTATTTGAAATTTCAGAAAAAAA-GATTTATCCTTAATGATGTAA----TCATTTTCCTCT-TCAGAAACTGTAATGAATCCAGCAAGCCATAGAAAAATAAAGCTTTAATGTTGTACATTTTATATAGACCCCTGGTTGTGGTGAGCATG--TTTTTCTCTCACCGTGTGGCAGACAATGAGATGTCTTCTTGGTATTCTATCAGAGATCCTCCAGGGTCCACTTAAGAATTCTCTGTATAGATGTAGAAAGTTCACTTCAGAA--TCCTAAAATGGAGGGGGGGGGGATTCATAAAGCCTTTATGATT------CATCTGATTTT-----CTGTTACATCTAAAGCTTCATTGCACAGAAAGAAGGAAATTGATTTCTTCCTGATGGGAAAATAGGAAGCAATATGATGGAAAGCAGTACACATG--------GCCAAAGTCAC-ACAAATAATTTAACACA---GTGATATCAACCCAGCAATTTGACAAAACTGTGAATTCA-ACCACTGATCCATGGCTTCATG----TATAAGCTACAGTGGTGGATATTTTTCAT----CAGTGACACACAGTGTTTGAC---TTGAGTGATATAAAATAATAGGTGATGAGGCATTCTT-TTGTTGTTATGTTTATTTGCAGTTTCC-T----------GAAGAGAAAAGTGAATTGG i mm10.chr5 C 0 C 0 s canFam3.chr3 3819215 705 - 91889043 TATAAATTTGGATTTGAATTCAAAGTCTTTGACAGAACTATTGCCAAGAAATGAGAAAGTAATATTTTTCTAAAACTATTACTTGAAAATCTTGAAAGAAATGACTTATCCATAAAGATTTAATTTTTTTTTTTCCTATTTGAAGTGCTGCAAGTACCCAGGCAG--CACTAGAAACCGAAACCTTTATGTTGTACGTTGTACTTAGACACCTGG-TGTCGGGTCCACA--ATTTT-TCCTGCTGAGCAGCAGACAATGAGATGTAATATTGACATTCTCTTTGAAATGCTCCAGGGTCTCCTAAAGGACTCCCTCTATAGAGGTAGAAAGTTCACTTAAGAA-CCTTGAAAAGG---------------CATATAACCTCAGTCAGGGCTTTAGATCAGATTTTACCTTTTCTTCTAACAGAAGCTAGA--CAGCAAAGAGAAAACAATTGATTTTTTCATGATGGGCAAATA---AATAATATAATGGAAACCATTATACAGGGGTCCAAAGtaaaaaat---aaaaattatttaaCACAAA-ACCACAGCACTCCAGAAATTTGACAAAATTGTGAATTCATGCCACCGATTCA---CATTATTTTACTACAAA-CACAGTGCTGTCTGTCTTTACG----TAG-GATACAGAGAGGCCGACGACCTAGGAAGCATTTCATAGTGGTTGCTG-----------CTATTGTTTTG--------TTGTCACTGTGAGTGACAGTGAACAGTGGTGTAAACTAG i canFam3.chr3 C 0 C 0 a score=8814.000000 s hg38.chr4_KI270790v1_alt 122868 3 + 220246 TGT s panTro4.chr4 21509371 3 + 193495092 TGT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21686456 3 + 198332218 TGT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20298804 3 - 85365473 TGT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16763810 3 + 184069350 TGT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20813120 3 + 189454096 TGT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16403719 3 + 178775436 TGT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19887499 3 - 48547382 TAT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21245832 3 - 190850796 TAC i calJac3.chr3 C 0 C 0 s mm10.chr5 49233179 3 + 151834684 TAT i mm10.chr5 C 0 C 0 e canFam3.chr3 3819920 0 - 91889043 C a score=314971.000000 s hg38.chr4_KI270790v1_alt 122871 117 + 220246 TTAcagctggctctctgtattcacaggaaattggttccgggacctccttgggataccaaaatcctgggatgcttgagacctgtaggcgctgtggaacccttgaatatggagggtgga s panTro4.chr4 21509374 117 + 193495092 TTAcagctggctctctgtattcacaggaaatgggttccgggacctccttgggataccaaaatcctgggatgctcgagacctgtaggcgctgtggaacccttgaatatggagggtgga i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21686459 117 + 198332218 TTAcagctggctctctgtatgtacaagaaattggttcccggacctccttgggataccaaaatcctgggatgctcgagacctgtaggctctgtggaacccttgaatatggaaggtcga i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20298807 117 - 85365473 TTAcagctggctctctgtattcacaggaaattggttccgggacctccttgggataccaaaatcctgggatgctcaagacccataggctctgtggaacccttgaatatggagggtcga i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16763813 117 + 184069350 TTTcagctggccctctgtattcacaggaaattggttctggaacctcctcgggataccaaaatcctgggatgctccagacctctaggctctgtggaacccttgaatatggagggtcga i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20813123 117 + 189454096 TTTcagctggccctctgtattcacaggaaattggttctggaacctcctcgggataccaaaatcctgggatgctccagacctctaggctctgtggaacccttgaatatggagggtcga i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16403722 117 + 178775436 TTTCAGCTGGCCCTCTGTATTCACAGGAAATTGGTTCCGGAACCTCCTCGGGATACCAAAATCCTGGGATGCTCCAGACCTCTAGGCTCTGTGGAACCCTTGAATATGGAGGGTTGA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19887502 117 - 48547382 TTTcagctggctctctgtattcacaggaaattggttccggaacctcctcgggataccaaaatcctgggatgctccagacctctaggctctgtggaacccttgaatatggagggtcga i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21245835 92 - 190850796 CTAAAGCCGGTTGTCTGTACTCATGAAAAATTGGCTCCGGGAC-------------------------ATGCTCGAGTCCTGTAGGCTCTGTGGAACCCTCAGATACGAAGGGTTGA i calJac3.chr3 C 0 C 0 e mm10.chr5 49233182 0 + 151834684 C e canFam3.chr3 3819920 0 - 91889043 C a score=8595.000000 s hg38.chr4_KI270790v1_alt 122988 2 + 220246 cT s panTro4.chr4 21509491 2 + 193495092 cT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21686576 2 + 198332218 cT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20298924 2 - 85365473 cT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16763930 2 + 184069350 cT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20813240 2 + 189454096 cT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16403839 2 + 178775436 CT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19887619 2 - 48547382 cT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21245927 2 - 190850796 CT i calJac3.chr3 C 0 C 0 s canFam3.chr3 3819920 2 - 91889043 CT i canFam3.chr3 C 0 C 0 e mm10.chr5 49233182 0 + 151834684 C a score=762359.000000 s hg38.chr4_KI270790v1_alt 122990 228 + 220246 Gtactgatcagctcctaaatgtcaaacacttggcactttatatccgttttaattctcaaaatagttctccaggtcgggtatcattattttaattttaaagacgaggaaccaagtttaagagagtaaatacttt-aggtaaatacttt------------agtaaatacttc--------------aggtaatgcca-ccagctagtaattgctagaactaggattcaagcAGCATAAATAGCTACTCACATG----------Ggtt s panTro4.chr4 21509493 228 + 193495092 Gtactgatcagctcctaaatgtcaaacacttggcactttatatccgttttaactctcaaaatagttctccaggtcgggtatcattattttaattttaaagacgaggaaccaagtttaagagagtaaatacttt-aggtaaatacttt------------agtaaatacttc--------------aggtaatgcca-ccagctagtatttgctagaactaggattcaagcAGCATAAATAGCTACTCACATG----------Ggtt i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21686578 228 + 198332218 Gtactgaccagctcctaaatgtcaaacacttggcactttatatccgttttaattctcaaaatagttctccaggtcgggtatcattattttaattttaaagatgaggaaccaagtttaagagagtaaatacttt-aggtaaatacttt------------agtaaatacttc--------------aggtaatgcca-ccagctagtaattgctagaactaggatccaagcAGCATAAATAACTACTCACATG----------Ggtt i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20298926 228 - 85365473 Gtactgatcaactcctaaatgtcaaacacttggcactttatatccgttttaattctcaaaatagttctccaggtcaggtatcattattttaattttaaagacaaggaaccaactttaagagagtaaatacttt-gggtaaatacttt------------agtaaatacttc--------------aggtaatgcta-ccagctagtaattgctagcactaggattcaagcAGCATAAATAACTGCTCACATG----------Ggtt i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16763932 227 + 184069350 Gtactgatcagctcctaaatgtcaaacacttggcactttatatccgttttaattctcaaaatagttctccagatcaggtatcattatcttaattttaaagacgaggaaccaagtttaagagagtaaatacttt-aggtaaatacttt------------agtaaatacttc--------------aggtaatacga-ccagctaataattgctagaactaggattcaagcAGCAAAAATAACTGCTCACAT-----------Ggtt i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20813242 227 + 189454096 Gtactgatcagctcctaaatgtcaaacacttggcactttatatccgttttaattctcaaaatagttctccagatcaggtatcattatctgaattttaaagacgaggaaccaagtttaagagagtaaatacttt-aggtaaatacttt------------agtaaatacttc--------------aggtaatacga-ccagctaataattgctagaactaggattcaagcAGCAAAAATAACTGCTCACAT-----------Ggtt i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16403841 214 + 178775436 GTACTGATCAGCTCCTAAATGTCAAACACTTGGCACTTTATATCcgttttaattctcaaaatagtTCTCCAGATCAAGTatcattatcttaattttaaagaCGAGGAACCAAGTTTAAGAGA--------------GTAAATACTTT------------AGTAAATACTTC--------------AGGTAATACGA-CCAGCTAATAATTGCTAGAACTAGGATTCAAGCAGCAAAAATAACTGCTCACAT-----------GGTT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19887621 227 - 48547382 GTACCGATCAGCTCCTAAAtgtcaaacacttggcactttatatccgttttaattctcaaaata-ttctccagatcaggtatcattatcttaattttaaagacgaggaaccaagtttaagagagtaaacacttt-aagtaaatacttt------------agtaaatacttc--------------aggtaatacga-ccagctaataattgctagaactaggattcaagcAGCAAAAATAACTGCTCACATG----------Ggtt i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21245929 203 - 190850796 GTACTGATCATCTCTCAAAtgtcaaacacttggaactttatatacattttaattctcaaaagagttctccaggttaggtatcatcatcttaattttaaagaagaggaaccaagtttaagaga--------------------------------------gtaaatacttt--------------aggcaaggcca-ccagctagtaattcctagaactgggattcgaacAGCATAAATAACTGCTCACATG----------Ggtt i calJac3.chr3 C 0 C 0 s mm10.chr5 49233182 201 + 151834684 ATACTAACCAACTACTAACAATCA-------GAAACTttatgttcatttcaattgtcaaaatatgttcctgggtagagt-tcactcttctcattttaaagatgagaaaacaggtgtgaggaagtaaatactt----------------------------gcaagga--tc--------------aggctata-------------acttgctaaaactgggatgcagacTAAATAAATAATACTTCATGAAATAATAAAGTAGTT i mm10.chr5 C 0 C 0 s canFam3.chr3 3819922 248 - 91889043 Atactgatcaactactaaatgtcaaacacttggcaccttagaccagttttaactctcaag--agttctccaggtggagtatc------ttcattttaaagatgagcaaaggggtgtaagaaagtaaatactttgGGGTATTTACTTTGGAGTGTAATAGAGTAGATACTTTGGGGGTATACTTTGGGGTAATATCACCCAGCCAATAATTGCTGAGACTGGAGTTCAAACAGCATAAGTAATTGCTCACGTG----------GATT i canFam3.chr3 C 0 I 72 a score=665113.000000 s hg38.chr4_KI270790v1_alt 123218 238 + 220246 tatgacatgacgagcactgtg---ctaagcaacttacctggattggctcattaaatcttcctcataactcttcaaaagaggtcctaatattttactcacttaaaagatgagaaaacaggccag--gcgcggtggcttatgtaagcatgtaatcccagcactttgggagac-tgaggcgggtggatggcttgcggataggcattcaagaccagactggtgaacatggtaaaaccctgtctctact s panTro4.chr4 21509721 238 + 193495092 tatgacatgacgagcactgtg---ctaagcaacttacctggattggctcattaaatcttcctcataactcttcaaaagaggtcctaatattttactcacttaaaagatgagaaaacaggccag--gcgcggtggcttatgtaagcatgtaatcccagcactttgggagac-tgaggcgggtggatggctagcggataggcgttcaagaccagactggtgaacatggtaaaaccccgtctctact i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21686806 239 + 198332218 tatgacatgatgagcactgtg---ctaagcgacttacctggattggctcattaaatcttcctcataactcttcaaaagaggtcctaatattttactcacttaaaagatgagaaaacaggccag--gtgtggtggcttatgtaagcatgtaatcccagcactttgggagacttgaggtgggtggatggcttgaggataggcattcaagaccagcctggtgaacatggtaaaactccgtctctact i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20299154 240 - 85365473 tatgacatgatgagcactgtg---ctaagcaacttacctggattggctcattaaatcttcctcataactcttcaaaagaggtcctaatattttactcacttaaaagatgagaaaacaggccaggcgcgcggtggcttacgtaagcatgtaatcccagcactttgggaggc-tgaggcgggtggatggcttgaggataggcgttcgagaccagcctggtgaacatggtaaaaccccgtctctatt i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16764159 234 + 184069350 tatgacatgatgagcactgtg---ctaagcagcttacctggattggctcattaaatctttctcaaaactcttcaaaagaggtcctaacattttaatcacttaaaagatgagaaaacaggccag--gtgtggtggctcac----acatgcaatcctagcactttgggagac-cgaggcgggtgtatcgcttgaaaataggagttcaagaccagcctggtgaacatggtaaaaccctgtctctact i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20813469 234 + 189454096 tatgacatgatgagcactgtg---ctaagcagcttacctggattggctcattaaatctttctcaaaactcttcaaaagaggtcctaacattttaatcacttaaaagatgagaaaacaggccag--gtgtggtggctcac----gcatgcaatcctagcactttgggagac-cgaggcgggtgtatcgcttgaaaataggagttcaagaccagcctggtgaacatggtaaaaccctgtctctact i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16404055 234 + 178775436 TATGACATGATGAGCACTGCA---CTAAGCAGCTTACCTGGATTGGCTCATTAAATCTTTCTCATAACTCTTCAAAAGAGGTCCTAACATTTTAATCActtaaaagatgagaaaacaggccag--gtgcggtggctcac----gcatgcaatcctagcacttagggagac-cgaggtgggtgtatcGCTTGAaaataggagttcaagaccagcctggtgaacatggtaaaaccctgtctctact i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19887848 234 - 48547382 tatgacatgatgagcactgtg---ctaagcaacttacctggattggctcattaaatctttctcataactcttcaaaagaggtcctaacattttactcacttaaaagatgagaaaacaggccag--gtgcggtggctcac----gcatgtaatcctagcactttgggagac-cgaggcgggtgtactgcttgaaaataggagttcaagaccagcctggtgaacatggtaaaaccctgtctctact i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21246132 233 - 190850796 tatgacatgatgagcaccgtg---ctaagcaacttacatggattggctcattaaatcttcctcataaatcttcaaaagaggtcctagtattttactcacttaaaagatgagaaaacaggctgt--gtgcagtgactcac----acctgtaatttcagcactttgggaggc-caaggcgggtggataacctgaggttaggagttagaaaccagcctggccaacatag-aaaaccctgcctctacc i calJac3.chr3 C 0 C 0 s mm10.chr5 49233383 149 + 151834684 TATAAAGTAAAGAGCACCATGATAATAAATAGCCAATATAAACTGCCTCATGGATGCTG--TCAAAGCTCAGACAAATAGAACCAGACATGTTCTTCAC----------AAAACATAGGTTAT------------------------------TCAGCA---------GC-T-------------------------------------CAGCATAATGAACTTGG------CCTGTATCTGCC i mm10.chr5 C 0 C 0 e canFam3.chr3 3820170 72 - 91889043 I a score=313871.000000 s hg38.chr4_KI270790v1_alt 123456 112 + 220246 aataatacaaaaattagctgggcatggtggcgcacacctgtaatcccagctactctggaggctgaagcaggagaatcgcttgaaccccagagatggaggttgcagtgagcca s panTro4.chr4 21509959 112 + 193495092 aataatacaaaaattagctgggcatggtggcgcacacctgtaatcccagctactctggaggctgaagcaggagaatcgcttgaaccccagagatggaggttgcagtgagcca i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21687045 112 + 198332218 aataatacaaaaattagctgggtgtggtggtgcatgcctgtaatcccagctactctggaggctgaagcaggagaatcgtttgaaccccggagatggaggttgcagtgagcca i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20299394 112 - 85365473 aataacacaaaaattagctgggcgtggtggcgcacgcctgtaatcccagctactctggaggctgaagcaggacaatcgcttgaaccccggagacggaggttgcagtgagcca i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16764393 112 + 184069350 aataatacaaaaattagctgggcatggtggcgcacacctgtaatcccagctactctagaggctgaggcaggagaatcacttgaatcctggagatggaggttgcagtgagcca i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20813703 112 + 189454096 aataatacaaaaattagctgggcatggtggcgcacacctgtaatcccagctactctagaggctgaggcaggagaatcgcttgaatcctggagatggaggttgcagtgagcca i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16404289 112 + 178775436 aataatacaaaaattagctggacatggtggcgcacacctgtaatcccagctactctagaggctgaggcaggagaatcacttgaatcctggagatggaggttgcagtgagcca i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19888082 112 - 48547382 aataatgcaaaaattagctgggcatggtcgcgcacacctgtaaacccagctactctagaggctgaggcaggagaatcacttgaatcctggagatggaggttgcagtgagcca i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21246365 89 - 190850796 agtaatacaaaaattagctggttatggtggtacatgcctacaatcccagctactccagaggctgaaggaggcaga-----------------------gttgcagtgagccg i calJac3.chr3 C 0 C 0 e mm10.chr5 49233532 0 + 151834684 C e canFam3.chr3 3820170 72 - 91889043 I a score=36235.000000 s hg38.chr4_KI270790v1_alt 123568 12 + 220246 agatcctgccat s panTro4.chr4 21510071 12 + 193495092 agatcctgccat i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21687157 12 + 198332218 agatcctgccat i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20299506 12 - 85365473 agatcctgccat i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16764505 12 + 184069350 agatcccgccat i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20813815 12 + 189454096 agatcccgccat i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16404401 12 + 178775436 agatcccgccat i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19888194 12 - 48547382 agatcccgccat i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21246454 9 - 190850796 agatt---gcat i calJac3.chr3 C 0 C 0 s canFam3.chr3 3820242 12 - 91889043 aggtcctgacat i canFam3.chr3 I 72 C 0 e mm10.chr5 49233532 0 + 151834684 C a score=3756888.000000 s hg38.chr4_KI270790v1_alt 123580 1106 + 220246 tgcactccagcctggg----tgacaagaacaaaagtccgtctc-aaaaaaaaaaaaaaaaaaa-aagat----gagaaaacaaaattttggagttgttaaggagcttgcctaatcacacaaatca-taagtggctgaacggcagttcaaactgagagtgtttgacaccagaactccaagctttttacttatcattccataatgtCTCCCAATTTTAATGTCCATGCTCTTTCCTCTACAGGAATGGGGCAGGGGGGA--GAAA-------------------AACAGTAAAATTCACACTTTT-CATTTTCTTC-CTTCCTCTCATC-CAATTCCTAAAAGAGTAAGACAATATAACACATC-AGTACTTTTGGAGGTTCAAAAGATGCTAATGATAATTTATCTGA-------AGGTTTACTTCAATTGCTGAAGG-AAATGTTTTCTAGAAGAAAAAGAGAGCTCAGCAGAGTACACAACTATATCCATATTG-ATGGATACCTGTGCAATAAATTTTCCAATCAGGGGCAAATCAAGGCCAATCATGATTCATCAGCAGCCTAAGAG----A----CAGCAT-GGAGTC--AGACAATTTAAAGGTACTCCACATGTCTTCTGAATTCTGGTCTGTTTCAGATGGCACTCAATGCACAGTCTAGGTTCAAAGATTTTTTTTCTCTGGCTGCACTTGGTGCAAGC------TGTCAGGTCTATTTTTGGGGGTATCCTTTAGAAACAC---AACATAAAACTGTATAACCATGAAAAAGAAAA------TT-CAGGAAAAAGCTGCCATTTCAAA-------TATTTTTATG-TTTTTTATCATAGTGGTGGGAGCTCTACCTTTACAAGGCAAACTGCAGCATGATCCTGGCAACCTCCCGTGTAAATGCAA-GCAAATTACTAGACAACTGACATTTCTTGGGCAGCAAAGATTTCAA------TTTCTACACCCTGGTTTTTGGAAATTCTGTTCTGGCTAGTTGTATTTGAGGTTTTGACAGCCAAATAAATCTG-------CTGCAAAGAATGTTGCACATTTCATTAAAAATGC-TCCATCTAGACACACATATTCTGTCTGCTATAGACCTGAATGCATGATTGTGTGAACATGTGAGACAC--AGAA-------TTTC---------AGTCTTGAAAGATGGCTCCTC-AGTGAAACTCCTTTTTTGTAC s panTro4.chr4 21510083 1104 + 193495092 tgcactccagcctggg----tgacaagaacgaaagtccgtctc-aaaaaaaaaaaaaaaaaaa---gat----gagaaaacaaaattttggagttgttaaggagcttgcctaatcacacaaatca-taagtggctgaacggcagttcaaactgagagtgtttgacaccagaactccaagctttttacttatcattccataatgtCTCCCAATTTTAATGTCCATGCTCTTTCCTCTACAGGAATGGGGCAGGGGGGA--GAAA-------------------AACAGTAAAATTCACACTTTT-CATTTTCTTC-CTTCCTCTCATC-CAATTCCTAAAAGAGTAAGACAATATAACACATC-AGTACTTTTGGAGGTTCAAAAGATGCTAATGATAATTTATCTGA-------AGGTTTACTTCAATTGCTGAAGG-AAATGTTTTCTAGAAGAAAAAGAGAGCTCAGCAGAGTACACAACTATATCCATATTG-ATGGATACCTGTGCAATAAATTTTCCAATCAGGGGCAAATCAAGGCCAATCATGATTCATCAGCAGCCTAAGAG----A----CAGCAT-GGAGTC--AGACAATTTAAAGGTACTCCACATCTCTTCTGAATTCTGGTCTGTTTCAGATGGCACTCAATGCACAGTCTAGGTTCAAAGATTTTTTTTCTCTGGCTGCACTTGGTGCAAGC------TGTCAGGTCTATTTTTGGGGGTATCCTTTAGAAACAC---AACATAAAACTGTATAACCATGAAAAAGAAAA------TT-CAGGAAAAAGCTGCCATTTCAAA-------TATTTTTATG-TTTTTTATCATAGTGGTGGGAGCTCTACCTTTACAAGGCAAACTGCAGCATGATCCTGGCAACCTCCCGTGTAAATGCAA-GCAAATTTCTAGACAACTGACATTTCTTCGGCAGCAAAGATTTCAA------TTTCTACACCCTGGTTTTTGGAAATTCTGTTCTGGCTAGTTGTATTTGAGGTTTTGACAGCCAAATAAATCTG-------CTGCAAAGAATGTTGCACATTTCATTAAGAATGC-TCCATCTAGACACACATATTCTGTCTGCTATAGACCTGAATGCCTGATTGTGTGAACATGTGAGACAC--AGAA-------TTTC---------AGTCTTGAAAGATGGCTCCTC-AGTGAAACTCCTTTTTTGTAC i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21687169 1109 + 198332218 tgcactccagcctggg----tgacaagagcaaaagttcgtctc-aaaaaaaaaaaaaaaaaaaaaagat----gagaaaacaaaattttggagttgttaaggagcttgcctaatcacacaaatca-taagtggctgaatggcagttcaaactgagactgtttgacaccagaactccaacctttttacttatcattccataatgtCTCCCAATTTTAATGTCCATTCTCTTTCCTCTATAGGAATGGGGCAGGGGGGA--GAAA-------------------AACAGTAAAATTCACACTTTT-CATTTTCTTC-CTTCCTGTCATC-TAATTCCTAAAAGAGTAAGACAATATAACACATC-AGTACTTTTGGAGGTTCAAAAGATGCTAATGATAATTTATCTGA-------AGGTTTACTTCAATTGCTGAAGG-AAATGTTTTCTAGAAGAAAAAGAGAGCTCAGCAGAGTACACAACTATATCCATATTG-ATGGATACCTGTGCAATAAATTTTCCAATCAGGGGCAAATCAAGGCCAATCACGATTCATCAGCAGCCTAAGAG----A----CAGCAT-GGAGTCAAAGACAATTTAAAGGTACTTCACATGTCTTCTAAATTCTGGTCTGTTTCAGATGGCACTCAATGCACAGTCTAGGTTCAAAGATTTTTTTTCTCTGGCTGCACTTGGTGCAAGC------TGTCAGGTCTATTTTTGGGGGTATCCTTTAGAGACAC---AACATAAAACTGTATAACCATGAAAAAGAAAA------TT-CAGGAAAAAGCTGCCATTTCAAA-------TATTTTTATG-TTTTTTATCATAGTAGTGGGAGCTCTACCTTTACAAGGCAAACTGCAGCATGATCCTGGCAACCTCCCGTGTAAATGCAA-GCAAATTACTAGACAATTGACATTTCCTGGGCAGCAAAGATTTCAA------TTTCTACACCTTGGTTTTTGGAAATTCTGTTCTGGCTAGTTGTATTTGAGGTTTAGACAGCCAAACAAATCTG-------CTGCAAAGAATGTTGCATATTTAATTAAGAATGC-TCCATCTAGACACACATATTCTGTCTGCTATAGCCCTGAATGCCTGATTGTGTGATCATGTGAGACAC--AGAA-------TTTC---------AGTCTTGAAAGATGGCTCCTC-AGTGAGACTCCTTTTTTGTAC i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20299518 1095 - 85365473 tgcactccagcctggg----tgataagagcaaaagtccgtctc-aaaaaaaaaaa-----------gat----cagaaaacaaaattttggagttgttaaggagcttgcctaatcacacaaagca-taagtggccgaatggcagttcaaac--agactgtttgacaccagaactccaagctttttacttatcaccccataatgtCTCCCAATTTGAATGTCCATGCTCTTTCCTCTACAGGAATGGGGCAGGGGGGA--GAAA-------------------AACAGTAAAATT--CACTTTC-CATTTTCTTC-CTTCCTCTCATC-CAATTCCCAAAAGAGTAAGACAATATAACACATC-AGTACTTTTGGAGGTTCAAAAGATGCTAATGATAATTTATCTGA-------AGGTTTACTTCAATTGCTGAAGG-AAATGTTTTCTAGAAGAAAAAGATAGCTCAGCAGAGTATACAACTATATCCATATTG-ATGGATACCTGTGCAATAAATTTTCCAATCAGGGGCAAATCAAGGCCAATCATGATTCATCAGCAGCCTAAGAG----A----CAGCAT-GGAGTCAAAGAAAATTTAAAGGTACTCCACATGTCTTCTAAATTCTAGTCTGTTTCAGATGGCACTCAATGCACAGTCTAGGTTCAAAGATTTTTTTTCTCTGGCTGCACTTGGTGCAAGC------TGTCAGGTCTATTTTTGGGGATATTCTTTAGAAACAC---AACATAAAACTGTATAACCATGAAAAAGAAAA------TTCCAGGAAAAAGCTGCCATTTCAAA-------TATTTTTATG-TTTTTTATCATGGTAGTGGGAGCTCTACCTTTACAAGGCAAACTGCAGCATGATACTGGCAACCTCCTGTGTCAATGCAA-GCAAATTACTAGACAACTGACATTTCTTGGCCAGCAAAGATTTCAA------TTTCTACACCCTGGTTTTTGGAAATTCTGTTCTGGGTAGCTGTATTTGAGGTTTTGACAGCCAAACAAATCTG-------CTGCAAAGAATGTTGCACATTTCATTAAGAATGC-TCCATCTAAACACACATATTCTGTCTGCTATAGCCCTGAATGCCTGATTGTGTGAACACGTGAGACAC--AGAA-------TTTC---------AGTCTTGAAAGATGGCTTCTC-AATAAGACTCCTTTTTTGTAC i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16764517 1109 + 184069350 tgcactccaacctggg----tgacaagatctaaattctgtatc-aaaaaaaaaaaaaaaa------gat----gagaaaaCAAAagtttagagttgttaaggagcttgccaaatcacacaaatca-taagtggctgaagggcagttcaaattgagactgtttgacaacagaactccaggctttttacttatcattccataatatCTGCTAATTTTAATGTCCATGCTCTCTTCTCTACAGGAATGGGGCATGGGGCA--GAAA-------------------AACAGTAAAATTCACACTTTT-CATTATCTTCTCTTCCTCTCATC-CAATTCCCAAAAGAGTAAGACAATATAACACACC-AGTGCTTTTGGAGGTTCAAAAGATGTTAATGATAATTTATTTGGACAAAACAGGTTTACTTCAATTGCTGAAGG-AAATGTTTCCTAGAAGGAAAAGAGAGCTCAGCAGTGTATACAACTGTATCCATATTG-ATGGATACCTGTGCAACAAATTTTCCAATCAGGGCCAAATCAAGGCCAATCATGATTCATCAGCAGCCTAAGAG----A----CAGCAT-GGAGTCAAAGTCAATTTAAAGGTACTCCACATGTCTTCCAAATTCTGGTCTGTTTCAGATGGCACTCAATGCACAGTCTAGGTTCAAAGA-TTTTTCTCTCTGGTTGCACTTGGTGCAAGC------TGTCAGGCCTACTTTTTTGGTTATCCTTTAGAAACAT---GACATAAAATTGTATAACCATGAAAAAGGAAA------TT-CAGGTAAAAGCTGCCATTTCAAA-------TATTTTTATG-TTTTTTATCACAGTAGTGGGAGCTCTACCTTTACAAGGCAAACTGCAGCATGATCCTGGCAATCTCCCATGTAAATGCAA-GCATAATACTAGACGACTGATATTTCTTGGGCAGCAGAGATTTCAA------TTTATACACCCTAGTTTTTGGAAATTCTGTTCTGGCTTGTTGTAATTCAGATTTTGACAGCCAAACAAATCTG-------CTGCAAAGAATGTTGCACATTTCATT--GAGTGC-TCCATCTAAACACACATATTCTGTCTGCTATAGCCCCGAATGCCTGATTGTGTGAACATGCGAGACAC--AGAA-------CTTC---------AGTCTTAAAAGATGGATCCTCAAGTGAGACTCCTTCTTTGTAT i rheMac3.chr5 C 0 I 300 s macFas5.chr5 20813827 1109 + 189454096 tgcactccaacctggg----tgacaagatctaaattctgtctc-aaaaaaaaaaaaaaaa------gat----gagaaaacaaaagtttagagttgttaaggagcttgccaaatcacacaaatca-taagtggctgaagggcagttcaaattgagactgtttgacaacagaactccaggctttttacttatcattccataatatCTGCTAATTTTAATGTCCATGCTCTCTTCTCTACAGGAATGGGGCATGGGGCA--GAAA-------------------AACAGTAAAATTCACACTTTT-CATTATCTTCTCTTCCTCTCATC-CAATTCCCAAAAGAGTAAGACAATATAACACACC-AGTGCTTTTGGAGGTTCAAAAGATGTTAATGATAATTTATTTGGACAAAACAGGTTTACTTCAATTGCTGAAGG-AAATGTTTCCTAGAAGAAAAAGAGAGCTCAGCAGTGTATACAACTGTATCCATATTG-ATGGATACCTGTGCAACAAATTTTCCAATCAGGGCCAAATCAAGGCCAATCATGATTTATCAGCAGCCTAAGAG----A----CAGCAT-GGAGTCAAAGTCAATTTAAAGGTACTCCACATGTCTTCCAAATTCTGGTCTGTTTCAGATGGCACTCAATGCACAGTCTAGGTTCAAAGA-TTTTTCTCTCTGGTTGCACTTGGTGCAAGC------TGTCAGGCCTACTTTTTTGGTTATCCTTTAGAAACAT---GACATAAAATTGTATAACCATGAAAAAGGAAA------TT-CAGGTAAAAGCTGCCATTTCAAA-------TATTTTTATG-TTTTTTATCACAGTAGTGGGAGCTCTACCTTTACAAGGCAAACTGCAGCATGATCCTGGCAATCTCCCATGTAAATGCAA-GCATAATACTAGACGACTGATATTTCTTGGGCAGCAGAGATTTCAA------TTTCTACACCCTAGTTTTTGGAAATTCTGTTCTGGCTTGTTGTAATTCAGATTTTGACAGCCAAACAAATCTG-------CTGCAAAGAATGTTGCACATTTCATT--GAGTGC-TCCATCTAAACACACATATTCTGTCTGCTATAGCCCCGAATGCCTGATTGTGTGAACATGCGAGACAC--AGAA-------CTTC---------AGTCTTAAAAGATGGATCCTCAAGTGAGACTCCTTCTTTGTAT i macFas5.chr5 C 0 I 307 s papAnu2.chr5 16404413 1113 + 178775436 tgcactccaacctggg----tgacaagatctaaattccgtctcaaaaaaaaaaaaaaaaa------gat----gagaaaacaaaagtttaGAGTTGTTAAGGAGCTTGCCAAATCACACAAATCA-TAAGTGGCTGAAGGGCAGTTCAAATTGAGACTCTTTGACACCAGAACTCCAGGCTTTTTACTTATCATTCCATAATATCTGCTAATTTTAATGTCCATGCTCTCTTCTCTACAGGAATGGGGCATGGGGCA--GAAA-------------------CACAGTAAAATTcacactttt-cattttcttctcttcctctcatc-CAATTCCCAAAAGAGTAAGACAATATAACACACC-AGTGCTTTTGGAGGTTCAAAAGATGTTAATGATAATTTATTTGGACAAAACAGGTTTACTTCAATTGCTGAAGG-AAATGTTTCCTAGAAGAAAAAGAGAGCTCAGCAATGTACACAACTGTATCCATATTG-ATGGATACCTGTGCAACAAATTTTCCAATCAGGGCCAAATCAAGGCCAATCATGATTCATCAGCAGCCTAAGAG----A----CAGCAT-GGAGTCAAAGTCAATTTAAAGGTACTCCACATGTCTTCCAAATTCTGGTCTGTTTCAGATGGCACTCAATGCACAGTCTAGGTTCAAAGA-TTTTTCTCTCTGGTTGCACTTGGTGCAAGC------TGTCAGGCCTACTTTTTTGGTTATCCTTTAGAAACAT---GACATAAAATTGTATaaccatgaaaaaggaaa------tt-caggTAAAAGCtgccatttcaaa-------tatttttatgtttttttatcaCAGTAGTGGGAGCTCTACCTTTACAAGGCAAACTGCAGCATGATCCTGGCAATCTCCCATGTAAATGCAA-GCATAATACTAGACAACTGATATTTCTTGGGCAGCAGAGATTTCAA------TTTCTACACCCTAGTTTTTGGAAATTCTGTTCTGGCTTGTTGTAACTGAGGTTTTGACAGCCAAACAAATCTG-------CTGCAAAGAATGTTGCACATTTCATTAAGAGTCC-TCCATCTAAACACACATATTCTGTCTGCTATAGCCCCGAATGCCTGATTGTGTGAACATGCAAGACAC--AGAA-------CTTC---------AGTCTTAAAAGATGGATCCTCAAGTGAGACTCCTTCTTTGCAT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19888206 1111 - 48547382 tgcactccaacctggg----tgacaagatctaaattctgtctc--------aaaaaaaaa------gat----gagaaaacaaaattttggagttgttaaggagcttgccaaatcacacaaatca-taagtggctgaagggcagctcaaattgagactgtttgacaccagaactccaggctttttac-tatcattccataatatCTGCTAATTTTAATGTCCATGCTCTCTTCTCTACAGGAATGGGGCATGGGGCA--GAAA-------------------AACAGTAAAATTCACACTTTT-CATTTTCTTCTCTTCCTCTCATC-CAGTTCCCAAAAGAGTAAGACAATATAACACACC-AGTACTTTTGGAGGTTCAAAAGATGTTAATGATAATTTATCTGGACAAAAAAGGTTTACTTCTATTGCTGAAGG-AAATGTTTCCTAGAAGAAAAAGAGAGCTCAGCAGAGTACACTACTGTATCCATATTG-ATGGATACCTGTGCAATAAATTTTCCAATCAGGGCCAAATCAAGGCCAATCATGATTCATCAGCAGCCTAAGAG----A----CAGCAT-GGAGTCAAAGTCAATTTAAAGGTACTCCACATGTCTTCCAAATTCTGGTCTGTTTCAGATGGCACTCAATGCACAGTCTAGGTTCAAAGA-TTTTTCTCTCTGGTTGCACTTGGTGCAAGC------TGTCAGGCCTACTTTTTTGGTTATCCTTTAGAAACAT---GACATAAAATTGTATAACCATGAAAGAGGAAA------TT-CAGGTAAAAGCTGCCATTTCAAA-------TATTTTTATG-TTTTTTATCACAGTAGTGGG-GCTCTACCTTCACAAGGCAAACTGCAGCATGATCCTGGCAATCTCCCATGTAAATGCAA-GCATAATACTAGACAACTGATATTTCTTGGGCAGCAGAGATTTCAA------TTTCTACACCCTAGTTTTTGGAAATTCTGTTCTGGCTTGTTGTAATTGAGGTTTTGACAGCCAAACAAATCTG-------CTGCAAAGAATGTTGCACATTTCATTAAGAATGC-TCCATCTAAACACACATATTCTGTCTGCTATAGCCCCGAATGCCTGATTGTGTGAACATGCGAGACAC--AGAA-------TTTCAGTCTTAAAAGTCTTAAAAGTTGGATCCTCAAGTGAGACTCCTTCTTCGTAT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21246463 1100 - 190850796 tgcactccagcacaag----agacaagagcgaaactccgcctc-aaaaaaaaaaaaaaaaaa----gat----gagaaaaccaaaaattgcagttgttaagaagcttgcctaatcacacagatca-taagtggctgaatggcagttcaagctgagactgtctgaaaccagaactccaagc-ttttac---tcattccacaatacCTGCTAATTTCAATGCCCATGCTCTTTCCTCTACAGGAATGGGGGTGGAGGGAGTGAAA-------------------AACAGTAAAATTCACATTTTT-CATTTTCTTCTCTTCCTCTCATT-CAATTCCCCAAAGAATAAGACAATATAACACACC-AGTACCTTTAGAGGTTCAAAAGACACTAATGATAATTTATCTGAACAAAAAAGGTTTACTTCAATTGCCAGAAG-AAATGTTTTCTAGAAGAAAAAGAGTGCTCAGTAGAGTACACAATAGTATCCATATAT-GTGGATACCTGTGCAATAAATTTTCCGCTAAGGACCAAATCAAGGCCAATCATGATTCATCAGCAGACTAAGAG----A----CAGCGT-GGAGTCAAAGACAATTTAAAGGTACTCCGCATGACTTCTAAATTCTGGTCTGTTTCACACGGCACTTTATGCACAGTCTAGGTTCAAATA--TTTTTTCTCTGGCTGCACTTGGTGCAAGC------TGTCAGGTCTATTTTTTAAGATATCCTTTAGAAACAC---AACATGAAATTGTGTAACCGTGAAAAGGAGAA------TT-CAGGAAAAAGCTATCATTTCAAA-------TATTTTTCTG-TTTTTTATCATAGTAGTGGGAGCTCTACCTTTACAAGGCAAACTGCAGCATGATACTGGCAACTTCTCGTGTCAATGCAA-GCATAGTACTAGGCAACTGATATTTTTTAGGGAGCAGAGATTTCAA------TTTCTGCACCTTGGTTTTTGGAAATT------------ATTGTAACTGAGGTTTTGACAGCCAGACAAATATA-------CTGCAAAGAATGCTGCTCATTTCATCAAGAATGC-TCCATCTAAACACACATATTCTATCTGCTATAGCCCAGAATGCCTGAGTGTGTGAACATGTGAGACACAGAGAA-------TTTC---------AGTCTTGAATGATGGGTCCTCAGCTGAGACTCTTTCTTTGTAC i calJac3.chr3 C 0 C 0 s mm10.chr5 49233532 1083 + 151834684 TTCACCCTGTTTTGGGTCTTTGGCAAGG---AAAGAGAGTCTA-AGACAGATAAAACCAGGGA---GATACAGAAGGACTAATAAATGTAAACTCGTTAATGAACCTGGC--------------------TGAGTAAGAGTCACTTAAA--TAAGACTATTTGATAGCAGAACTCCAAGATTTTCCACTCCTAACCCATAATAGCTACTAATTTCAATGTTCATGCTTTTCTCTCT-------TGTTTGTGGGGGAG--GGGA-------------------AGCAACAGAATTCACACTTTT-C-------CCCCTTTCTTCTACC-CAATTCTCCAA--------ACAGCACAATGCATCTAATAATTTTAGAGGCTCAAAGGATGCAAGTGATCTTTTAGCTGAACAAA--ATACCCAGTTCAATTGCTGAAGT-AAATGCTCACCAGCAGAATAAAA--GCTCTATATACAGCAAGACTGCA-CCATGCTGCATGGATATCCCTGTAACAAATCCCCCAATCAGGCTCAAATCAAGACGA------ACTCATCAACAGCTCAAGAGGTGAG----CAGCATAGAAGTCAGAGGTAAATTAAATGTGC--CATGTGTTCTCGAGACTCTCATCTGCTTCATGGGGCACTCAGTGCATAGTTCAGGTTCGGCAC-TTTTATCTTCTAACGCCACTTGATGTAAGTAAGCTGTGTAGTGTTTTTACCATTGACTTTGTTTTAGAAATAATAGCACCCGAACCTG-GCAACTTTGCAAAAGATGA---------CCATAACATCCTACCATTTCTACGGTCTCTCattttta-a-tttttaattttttt-------tcttttcttttattaaaataatGGCAGCATGATCCTGGCAACCATGCATGTAAATTCAAGGCAGAGGACCAGGCAACTGACATTCCTTGAGCACTAGAGATTGCAATTTTTTTTTCTGTACCGTGAGTTTCAGAGAGTCAGCACTTGTG---TGCAATTGAG-CTCTGACAGCCAAACAAATTGGCAATTGACTGTGAGAGCTGCCGCACA-CTCAGTAAAACTGC-TTTGT------GCACCTATT-TCTCTCCTGTACCCCATGGTGGCTGATCGCAGGAGTTTATAAGACCC--AGAACAAATTCCACC---------ACTCTTGAACAATGCAACAATTAGCCAGAGTCATT-TTTATGC i mm10.chr5 C 0 C 0 s canFam3.chr3 3820254 1068 - 91889043 ------------------------------------tttactc-acttaaaa--------------gat----gagcaaacaaaaatttgggtttctttaagaatttgttttactgcagagataattaagtggctgaaggctgattcaaactgagattgtatgacaccagaactccaag-tctgtaagcaccattccatagtgCCTGCTAATTGCAATGCCTATGCTCTTGCCTCTGCATAACTCAGGGAAAAAATA--AAAATAGTAAAATTCAAAACAACAACAGTAAAATCCATACTTTTATTTTTTTTTCTCCTCCTCTCATCAAAATTCTCCAAACAGTATAATGCTA-GACACACT-AGTGTCTTGGGAGGTTCAAAAGATGCTCATGATAATTTAGCCGAACTAAA-AGGTCCATTTCCATTGCCAAAAGAAAATGTTTTCTAGAAGAATAAAAGAGCTTA-CAGAGAACAGAACTGCATCTATCTTG-ATGGATTCTTATGCAATAAATTCTCCAATCAGGATCACATCAAGACCAATGATAATTCATCAGCAACCCAAGAG----ACAGTCAGTGT-GGAGTCAAAGGCAATTTAAAGCAATGCCACATTTCTTCTAGATTCAGGTCCATTTGAGATGGCATTCAAT--ACCGTCTTTTTTTTT----TTTTTTTTCCTGGCTGCACTTATT-----T------TGTTAGGC--------------ATCCTTTAGAAATAT--------AAAATTGTGTAACCATAAGAAAAAAAAAAAGAATA-CAGTAACATCCTGCCACTTCTAA-------TGTTCCCATA--TTTTTATTACGGTAGTAAAAGCTCTACCTTTACAAGGCAAATTCTAACATGATCTTGGCAACTTC---TGCAAATACAA-GCATAGTCCCAGAAAAGTGACATCCCTTGGGCACCAGAGATTTCAA------TTTCTGCACTCTGGATTTTGGAAACACTGTTCTAGCT---TGTAATTGAAGCTCTGACAGCCAAACAAATCTG-------CTGCAAGGAATGCTGCACAGTTCATAAAAAAAATATCCATCTGAATGCACACATTTTTTCTGTTATGGCCTAGGATGTCTGATTGTGTGAACTTGTGAGACAG--AGAGATAACTTCACC---------AGTCTTGAAAGAAGGATCCTCAAGTGAGACTC----TTGGCAC i canFam3.chr3 C 0 C 0 a score=243452.000000 s hg38.chr4_KI270790v1_alt 124686 73 + 220246 AAAGAAAAT-TAGTTACTTGTGATAATGTTGCAAAACTAGAGCTAATAAGGTA-TCCAGGTGTGTTCTGAT---AGCA s panTro4.chr4 21511187 73 + 193495092 AAAGAAAAT-TAGTTACTTGTGATAATGTTGCAAAACTAGAGCTAATAAGGTA-TCCAGGTGTGTTCTGAT---AGCA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21688278 76 + 198332218 AAAGAAAAT-TAGTTACGTGTGATAATGTTGCAAAACTAGAGCTAATAAGGTA-TCCAGGTGTGTTTTGATAACAACA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20300613 77 - 85365473 AAAGAAAATATAGTTACTTGTGATAATGTTGCAAAACTAGAGCTAATAAGGTA-TCCAGGTGTGTTCTGATaacaaca i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16765926 73 + 184069350 aaagaaaaT-TAGTTACTTGTGATAATGCTGCAAAACTAGAGCTAGTAAGGTA-TCCAGGTGTGTTCTGAT---AACA i rheMac3.chr5 I 300 C 0 s macFas5.chr5 20815243 73 + 189454096 aaagaaaaT-TAGTTACTTGTGATAATGCTGCAAAACTAGAGCTAGTAAGGTA-TCCAGGTGTGTTCTGAT---AACA i macFas5.chr5 I 307 C 0 s papAnu2.chr5 16405526 73 + 178775436 GAAGAAAAT-TAGTTACTTGTGATAATGCTGCAAAACTAGAGCTAGTAAGGTA-TCCAGGTGTGTTCTGAT---AACA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19889317 73 - 48547382 GAAGAAAAT-TAGTTACTAGTGGTAATGCTGCAAAACCAGAGCTAGTAAGGTA-TCCAGGTGTGTTCTGAT---AACA i chlSab2.chr27 C 0 I 7 s calJac3.chr3 21247563 70 - 190850796 AAAGAAAAT-CAGTTACTTGTGATAATGTGGCAAAACTAGAGCTAATAAGGTA-TCCAGGTGTGTTCTAAT---A--- i calJac3.chr3 C 0 C 0 s mm10.chr5 49234615 73 + 151834684 TAGGAAAAT-TAGTCTCTGAAAACAATACAATCCAACTAAGGCTTATAAAATG-CCCAGGTACATTCTGTT---TACA i mm10.chr5 C 0 C 0 s canFam3.chr3 3821322 60 - 91889043 AAGGCAAAT---------------AGCATAGCCAAGCAAGAGCTTCTGAGGTATTCTGGGTATGTTCTGTC---AACA i canFam3.chr3 C 0 C 0 a score=976.000000 s hg38.chr4_KI270790v1_alt 124759 5 + 220246 ---------------ACAAC- s panTro4.chr4 21511260 5 + 193495092 ---------------ACAAC- i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21688354 5 + 198332218 ---------------ACAAC- i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20300690 5 - 85365473 ---------------acaac- i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16765999 5 + 184069350 ---------------GCAAC- i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20815316 5 + 189454096 ---------------GCAAC- i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16405599 5 + 178775436 ---------------GCAAC- i papAnu2.chr5 C 0 C 0 s calJac3.chr3 21247633 5 - 190850796 ---------------ACAAC- i calJac3.chr3 C 0 C 0 s mm10.chr5 49234688 4 + 151834684 ----------------TAAA- i mm10.chr5 C 0 C 0 s canFam3.chr3 3821382 21 - 91889043 TCTTTTTTTTTTTTTTCAAAT i canFam3.chr3 C 0 C 0 e chlSab2.chr27 19889390 7 - 48547382 I a score=622847.000000 s hg38.chr4_KI270790v1_alt 124764 196 + 220246 AACAAAACCCTACATTCATTATATGTACTGGTTAACTGTGAGTAAAGAGTTATCTTTAAAGGAATAATTATATGAGAC-------------TTTGTCAAGGCATAAGTATAAATTATGCTGCTGATTAATTGGGTTTTAAAAGAATGTGAATAAATTTAGATGTGAATTTTAAGTTCTTGACAGAACTATTGCCC--AGAAATGAGAATGT s panTro4.chr4 21511265 196 + 193495092 AACAAAACCCTACATTCATTATATGTACTGGTTAACTGTGAGTAAAGAGTTATCTTTAAAGGAATAATTATATGAGAC-------------TTTGTCAAGGCATAAGTATAAATTATGCTGCTGATTAATTGGGTTTTAAAAGAATGTGAAGAAATTTGGATGTGAATTTTAAGTTCTTCACAGAACTATTGCCC--AGAAATGAGAATGT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21688359 195 + 198332218 AACAAAACCCTACATTCATTATATGTACTGGTTAATTGTGACTAAAGAGTTATCTTTAAAGGAATAATTATATGAGAC-------------TTTGTC-AGGCATAAGTATAAATTATGCTGCTGATTAATTGGGTTTTAAAAGAATGTGAATAAATTTGGATGTGAATTTTAAGTTCTTGACAGAACTATTGCCC--AGAAATGAGAATGT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20300695 196 - 85365473 aacaaaacCCTACATTCATTATATGTACTGGTTAATTGTGAATAAAGAGTTATCTTTAAGAGAATAATTACATGAGAC-------------TTTGTCAAGGCATAAGTATAAATTATGCTGCTGATTAATTGGGTTTTAAAAGAATGTGAATAAATTTGGATGTGAATTTTAAGTTCTTGACAGAACTATTGCCC--AGAAATGAGAATGT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16766004 196 + 184069350 AAGAAAACCCTACATTCATTATATGTACTGGTTAATTGTGAGTAAAGAGTTATCTTTAAAGTAATAATCATATGAGGC-------------TTTGTCCAGGCATAAGTATAAATTATGCTGCTGATTAACTGGGTTTTAAAAGAATGTGAATACAGTTAGATGTTAATTTTAAGTTCTTGACAGAACTATTGCTC--AGAAATGAGAATGT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20815321 196 + 189454096 AAGAAAACCCTACATTCATTATATGTACTGGTTAATTGTGAGTAAAGAGTTATCTTTAAAGTAATAATCATACGAGGC-------------TTTGTCCAGGCATAAGTATAAATTATGCTGCTGATTAACTGGGTTTTAAAAGAATGTGAATACAGTTAGATGTTAATTTTAAGTTCTTGACAGAACTATTGCTC--AGAAATGAGAATGT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16405604 196 + 178775436 AAGAAAACCCTACATTCATTATATGTACTGGTTAATTGTGAGTAAAGAGTTATCTTTAAAGTAATAATCATATGAGGC-------------TTTGTCCAGGCATAAGTATAAATTATGCTGCTGATTAACTGGGTTTTAAAAGAATGTGAATACAGTTAGATGTGAATTTTAAGTTCTTGACAGAACTATTGCTC--AGAAATGAGAATGT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19889397 196 - 48547382 AAGAAAACCCTACATTCATTATATGTACTGGTTAATTGTGAGTAAAGAGTTATCTTTAAAGTAATAATCATACGAGGC-------------TTTGTCCAGGCATAAGTATAAATTATGCTGCTGATTAACTGGGTTTTAAAAGAATGTGAATACAGTTAGATGTGAATTTTAAGTTCTTGACAGAACTATTGCTC--AGAAATGAGAATGT i chlSab2.chr27 I 7 I 313 s calJac3.chr3 21247638 192 - 190850796 AACAAAAACCTACATTCACTATAGGTACTGGTTAATTGTGAGTAAGGAGTTATCTTTAAAGGATTAATTATATGAGGC-------------TTTGTCAAGGCAGGAATATAAATTACACTGCTGATTAACTGGGTTTTAAAAAGACGTGAATACATTTGGATGTGAATTTTAAGTTCTTGACAGAACTATTACCT-GAAAAATGAG----- i calJac3.chr3 C 0 C 0 s mm10.chr5 49234692 133 + 151834684 GAGAGAAATCTCCAGACCCTG-----------TAGTTATGACTGAA-AATTATTTTTAAA--------TATATGGAGA-------------TTCCTCAGGCCAT------------------------------TTACAAAAGGATG---ATGACGCTTGTTGTTCAT------------ACAGCACTACTGATCAAAGAACCAAAACTGT i mm10.chr5 C 0 C 0 s canFam3.chr3 3821403 198 - 91889043 ------AACCTAAATTCACCG-ATGTTCCAGTTAATT-TAAGCGAAGGATTACCTTTATAAGAAAAAAAAAAAGGGAAAAAAATTATGGAGTTCGTGAGGCCACTAATACAAATTATTCTGCTGATTAATTGGGTAT--AAAAAATGTT-ATAAGTTTGGACTTGTATTTAAAGCCCCTGATAGAACCATTGCCA--AGAAATGAAAAAGT i canFam3.chr3 C 0 C 0 a score=1646797.000000 s hg38.chr4_KI270790v1_alt 124960 426 + 220246 AAGAAGATTTTGGATATT-----TTTTTCAGGACATGAAATGATTGTTTGAATTCTTTCATCAACTGTATTTGCTTCTATTTTCTTATGCTGCCAATCAAATGAAGGCAGCAGGAAATGCAATCTATTAGACTTAATCACATAAAGTTTAAATCATATTTAACTATTCAGTTGAAGAAAAATACCAGCTAAACTAATTACAGAACTGAAAAATGGCAATGATAAAATTAAGACCCAACAAAAAGACACGAAATACCTAAGAAATTGAGAATCAACAAATCT--ATACAATTGTCAGTGAAGACAGTCAATCTTTGTCATTAAATAATTTTAAAGAGAATTATTTAATTATTTCTCCATCAAATGTCTTTTATATTGTATCACAATTAAAATTCTGGAGGTCTCCTTCATTAACTAGACGAAA-TTAAAATGATG s panTro4.chr4 21511461 431 + 193495092 AAGAAGATTTTGGATATTTAAGATTTTTCAGGACATGAAATGATTGTTTGAATTCTTTCATCAACTCTATTTGCTTCTATTTTCTAATGCTGCCAATCAAATGAAGGCAGCAGGAAATGCAATCTATTAGACTTAATCACATAAAGTTTAAATCATATTTAACTATTCAGTTGAAGAAAAATACCAGCAAAACTAATTACAGAACTGAAAAATGGCAATGATAAAATTAAGACCCAACAAAAAGACACGAAATACCTAAGAAATTGAGAATCAACAAATCT--ATACAATTGTCAGTGAAGACAGTCAATCTTTGTCattaaataattttaaagagaattatttaattatttCTCCATCAAATGTCTTTTATATTGTATCACAATTAAAATTCTGGAGGTCTCCTTCATTAACTAGACGAAA-TTAAAATGATG i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21688554 431 + 198332218 AAGAAGATTTTGGATATTTAAGATTTTTCAGGACATGAAATGATTGTTTGAATTCTTCTATCAACTCTATTTGCTTCTATTTTCTTATGCTGCCAATCAAATGAAGGCAGCAGGAAATGCAATCCATTAGACTTAATCACATAAAGTTTAAATCACATTTAACTATTCAGTTGAAGAAAAATACCAGCAAAACTAATTACAGAACTGAAAAATGGCAATGATAAAATTGAGACCGAACAAAAAGACACGAAATACCTAAGAAATTGAGAATCAACAAATCT--ATACAATTGTCAGTGAAGACAGTCAATCTTTGTCattaaataattttaaagagaattatttaattatttatCCATCAAATGTCTTTTACATTGTATCACAATTAAAATTCTGGAGGTCTCCTTCATTAACTAGATGAAA-TTAAAATGATG i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20300891 408 - 85365473 AAGAAGATTTGGGATATTTAAGATTTTTCAGGACATGAAATGATTGTTTGAATTCTTTCATCAACTCTATTTGCTTCTATTTTCTTC-----------------------CAGGAAATGCAATCCATTAGGCTTAATCACATAAAGTTTAAATCACATTTAACTATTCAGTTGAAGAAAAATACCAGCAAAACTAATTACAGAACTGAAAAATGGCAATGATAAAATTGAGACCCAACAAAAAGACACGAAATACCTAAGAAATTGAGAATCAACAGATCT--ATACAATTGTCAGTGAAGACAGTCAATCTTTGTCATTAAATAATTTTAAAGAGAATTATTTAATTATTTCTCCATCAAATGTCTTTTACATTGTATCACAATTAAAATTCTGGAGGTCTCCTTCATTAACTAGACGAAA-CTAAAATGATG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16766200 434 + 184069350 AAGAAGATTTTGGATATTTAAAATTTTTCAGGACATGAAATGATTGTTTGAATTCTTTCATCAACTCTGTTTGCTTCTATTTTCTTACGCTGCCAATCAAATGAAGGCAGCAGGAAATGCAGTCCATTAGACTTAATCACATAAAGTTTAAATCACATTTAACTATTCGGTTGAAGAAAAATACCAGCAAAACTAATTACAGAACGGCAAAATGGCAATGATAAAATTGAGACCCAACAAAAAGACAGGAAATACCTAAGAAATTGAGAATCAACATATCTACATACAATTGTCAGTGAAGACAGTCAATCTGTGCCattaaataattttaaagagaattatttaattatttCTCCATAAAATGTCTTTTACATTGTATCACAATTAAAATTCTGGAGGTCTCCTTCATTAATTAGATGAAATTTAAAATGATG i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20815517 434 + 189454096 AAGAAGATTTTGGATATTTAAAATTTTTCAGGACATGAAATGATTGTTTGAATTCTTTCATCAACTCTGTTTGCTTCTATTTTCTTACGCTGCCAATCAAATGAAGGCAGCAGGAAATGCAATCCATTAGACTTAATCACATAAAGTTTAAATCACATTTAACTATTCGGTTGAAGAAAAATACCAGCAAAACTAATTACAGAACGGCAAAATGGCAATGATAAAATTGAGACCCAACAAAAAGACAGGAAATACCTAAGAAATTGAGAATCAACATATCTACATACAATTGTCAGTGAAGACAGTCAATCTGTGCCATTAAATAATTTTAAAGAGAATTATTTAATTATTTCTCCATAAAATGTCTTTTACATTGTATCACAATTAAAATTCTGGAGGTCTCCTTCATTAATTAGATGAAATTTAAAATGATG i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16405800 434 + 178775436 AAGAAGATtttggatatttaaaatttttcaggaCATGAAATGATTGTTTGAATTCTTTCATCAACTctgtttgcttctattttcttacGCTGCCAATCAAATGAAGGCAGCAGGAAATGCAATCCATTAGACTTAATCACATAAAGTTTAAATCACATTTAACTATTCAGTTGAAGAAAAATGCCAGCAAAACTAATTACAGAACTGCAAAATGGCAATGATAAAATTGAGACCCAACAAAAAGACAGGAAATACCTAAGAAATTGAGAATCAACATATCTACATACAATTGTCAGTGAAGACAGTCAATCTGTgccattaaataattttaaagataattatttaattatttctccATAAAATGTCTTTTACATTGTATCACAATTAAAATTCTGGAGGTCTCCTTCATTAAttagatgaaatttaaaatgatg i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19889906 434 - 48547382 aaGAAGATTTTGGATATTTAAGATTTTTCAGGACATGAAATGATTGTTTGAATTCTTTCATCAACTTTGTTTGCTTCTATTTTCTTATGCTGCCAATCAAATGAAGGCAGCAGGAAATGCAATCCATTAGACTTAATCACATAAAGTTTAAATCACATTTAACTATTCAGTTGAAGAAAAATACCAGCAAAACTAATTACAGAACTGCAAAATGGCAATGATAAAATTGAGATGCAACAAAAAGACAGGAAATACCTAAGAAATTGAGAATCAACAAATCTATATACAATTGTCAGTGAAGACAGTCAATCTGTGCCATTAAATAATTTTAAAGATAATTATTTAATTATTTCTCCATAAAATGTCTTTTACATTGTATCACAATTAAAATTCTGGAGGTCTCCTTCATTAATTAGATGAAATTTAAAATGATG i chlSab2.chr27 I 313 C 0 s calJac3.chr3 21247830 423 - 190850796 AAGATGATTTTGAATATTCAAGATTTTT-----CATGAAATGATTCTTTGAAGTCTTTCAGCAACTCTCTTTGCTTCTATTTTCTTAAGCTGC----CAAATGAAGACAGCAGAAAATGTAATCAATTAGACTTGATCACATAAAGTTTAAATCACATTTAACTATTCAGTTGAAGAAAAATACCAGAAAAACTAATTACAGAACTGCAAAATAGCAACAATAAAATTGAGACCCAAAAAAAGGACATGAAACACCTAAGAAATTGAGAATCAACAAATCT--ATAGAGCTGTCAGTGAAGACAGTCAATCTGTGTCATTAAATAACCTTAAAGAGAATTATGTAATTATTTCTCCATCAACTGTCTTTGACATTGTATCACAATTAAAATTCTGAAGGTCTCCTTCAGTAACTAGATAAAATTTAGAATGATG i calJac3.chr3 C 0 C 0 s mm10.chr5 49234825 419 + 151834684 -AGAAGACGT-GGACATTTGAAAATTTCCTGAACATGAAGCCAC--TCTGAATTTTTTCATCAATGCCTTTTGTTTCTATTTTCCTAAGCTGCCAATCAAAGAAAGATTGTAAGAAAAGCAATGCATTAGATTTAATCACATAAAGTTCAAATTGCTTTTAAATACTCAATTGGCGAAAAATAGCAGCAAAGCTAATTAAAAAGCTGCAAAAGAGCTGTGATAAAATTGAAGC---ACAATAAGAACGGAAATGCCTGAGAAAGTGAAAACCGCTAAATCT--ATATAATTGTTAATGAAGAGAGGCAATCTGTGTCATTAAATAATTTCAAAGGGAATTAATTACTTCTCTCTC--TAATATTTTTTTTTCTTTATATTACAATGGAAACTCCAAA----TTCTCCCTTGGCTGGATACAATGTTAAATGATG i mm10.chr5 C 0 I 3237 s canFam3.chr3 3821601 416 - 91889043 -AAGACAGTTTAGACATTGAGATTTTTCCAGGATATGAAACAATGGTTCAGATTCCTTCACAAAGCGCGTTTG----TATTTCCCCACATTGCCAATCAAATGAAGGCAGCAGGAAAGGCAATCCATTAGACTTAATCATAGTAAGCTCGAATCACATTTAACTATTCAATTGGAGAAAACCACCAGCAAAACTAATTACAGAGCTGCAAAATAGCAATGATAAAATTGAAGCACAACAATAGGACAAGAAACTCCTAAGAAATTGAGAATCAACAAATTC--TTGTGATTGCCAGTGAAAAGAGGCAA--AGTGTCATTCATTAATTTTGAGAAAAAT----TAATTATCTTTCCATCAAATAT-TTTAAAATTATATC----TCAAAACTCTAGAGTTCCTCTTCATTAACTAGACAACATGTTAAATGAGG i canFam3.chr3 C 0 C 0 a score=410305.000000 s hg38.chr4_KI270790v1_alt 125386 126 + 220246 AAAGGTCAATCTGACAAGAATATTGATAAATTGCACATAATGTTTCTTCTTGTTTCAAAAAGCAATATAAACAACTTCTAGGACATTTAATTTAAAAACTGAGAATTGAAAACTTTTAAAAATATT s panTro4.chr4 21511892 126 + 193495092 AAAGGTCAATCTGACAAGAATATTGATAAATTGCACATAATGTTTCTTCTTGTTTCAAAAAGCGATATAAACAACTTCTAGGACATTTCATTTAAAAATTGAGAATTGAAAACTTTTAAAAATATT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21688985 126 + 198332218 AAAGGTCAATCTGACAAGAATATTGATAAATTGCACATAATGTTTCTTCTTGTTTCAAAAAGTGATATAAACAAGTTCTGGGACATTTAATTTAAAAATTGAGAATTGAAAACTTTTAAAAATATT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20301299 126 - 85365473 AAAGGTCAATCTGACAAGAATACTGATAAATTGCACATAATATTTCTTCTTGTTTCAAAAAGTGATATAAACAACTTCTAGGACATTTAATTTAAAAATTGGGAATTGAAAACTTTTAAAAATATT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16766634 126 + 184069350 AAAGGTCAATCTGATAAGAATATTGATAAATTGCAAATAACGTTTCTTCTTCTTTCAAAAAGTGATATAAACAACTTCTAGGAGATTTAATTTAAAAATTGAGAATTGAAAACTTTAAAAAATATC i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20815951 126 + 189454096 AAAGGTCAATCTGACAAGAATATTGATAAATTGCAAATAACGTTTCTTCTTCTTTCAAAAAGTGATATAAACAACTTCTAGGAGatttaatttaaaaattgagaattgaaaactttaaaaAATATC i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16406234 126 + 178775436 aaaggTCAATCTGACAAGAATACTGATAAATTGCAAATAACGTTTCTTCTTCTTTCAAAAAGTGATATAAACAACTTCTAggagatttaatttaaaaattgagaattgaaaactttaaaaaatatc i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19890340 121 - 48547382 AAACGTCAATCTGACAAGAATATTGATAAATTGCAAATAACGTTTCTTCTTCTTTCAAAAAGTGATATAAACAACTTCTAGAAG-----ATTTAAAAATTGAGAATTGAAAACTTTAAAAAATATC i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21248253 124 - 190850796 AAAGGTCAATCTGACAAGAATATTGATAAACTGC--ATAACATTTCTTCTTGTTCCAAAAAGTCATATAAACAACTTCTAGGAAATTTCATTTGAAAATTGAGAATTAAAAACTTTTTAAAATATT i calJac3.chr3 C 0 C 0 s canFam3.chr3 3822017 124 - 91889043 AAACATCAACCTAACAAGAATACTGAAAAACTGCAAATAAAATTTCTTCTCGTTTCAAAGA-TAATATAACTGaattttagaaaatttta-taacaaatttcaaattaaaaatactttaaaatatt i canFam3.chr3 C 0 I 230 e mm10.chr5 49235244 3237 + 151834684 I a score=1176529.000000 s hg38.chr4_KI270790v1_alt 125512 353 + 220246 GTATATTCCATTATAGATAGATAGAAAAATAACTGTCTCATTCTTTTAGCTTATGGGTTCTTTGAGGATTAAAAAGAGTATCTTATTctaatttaggaattttgctagttgctgagtatgtctattctaattatatattctggaactgggtaaaaaactacaggatagatttggggac-------ccactg---gacc------cattaatcatatgacttccatcagc-cctactctgactagtcaaccacagtgacatgcttgtatcttctggaattaatagcagtttagagtcaatgtctaatagtccccaaaggttctgattatttccttttccctaaaacacagtc-ac-ccagtaaaaggccatga s panTro4.chr4 21512018 352 + 193495092 GTATATTCCATTATAGATATATAGAAAAATAACTGTCTCATTCTTTTAGCTTATGGGTTCTTTGAGGATTAAAAAGAGTATCTTATTctaatttaggaattttgctagttgctgagtatgtctattctaattatatattctggaactgggtaaaaaactacaggatagatttggggac-------ccactg---gacc------cattaatcatatgacttccatcagc-cctactctgactagtcaaccacagtgacatgc-tgtatcttctggaattaatagcagtttagagtcaatgtctaatagtccccaaaggttctgattatttccttttccctaaaacacagtc-ac-ccagtaaaaggccatga i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21689111 353 + 198332218 GTATATTCCGTTATAGATAGATAGAAAAATAACTGTCTCATTCCTTTAGCTTATGGGTTCTCTGAGGATTAAAAAGAGTATCTTATTctaatttgggaattttgctagttgctgagtatgtctattctaattatatattctggaactgggtaaaaaactacaggatagatttggggac-------ccactg---gacc------cattaatcatattacttccatcagc-cctactctgactagtcaaccacagtgacatgcttgtatcttctggaattaatagcagtttagagtcaatgtctaatagtccccaaaggttctgattatttcctttttcctaaaacacagtc-ac-ccggtaaaaggccatga i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20301425 349 - 85365473 GTATATTCCATTATAGATAGATAGAAAAATAACTATCTCATTCCTTTAGCTTATGGGTTCTTTGAGGATTAAAAAGGGTATCTTATTATaatttggaaattttgctagttgctga----gtctattctatttatatattctggaactgggtaaaaaactacaggatagatttggggac-------ccactg---gacc------cattaatcatatgacttctatcagc-cctactctgactagtcaaccacagtgacatgcttgtatcttctggaattaatagcagtttagagtcaatgtctaatagtccccaaaggttctgattatttccttttccctaaaacacagtc-ac-ccggtaaaaggccatga i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16766760 353 + 184069350 GTATATTGCATTATAGATAGATAGAAAAACAActgtcttgttcctttagcttatgagttctttgaggattaaaaagagtatcttattcaaatttgggaattttgctagttgctgagtatgtctattctaattatacattctggaactcggtaaaaaactacaggatagatttggggac-------ccactg---gacc------cattaatcatatgacttccatcagc-cctactctcactagtcaaccacagtgacatgcttgtatcttctggaattaatagcagtttagaatcaaggtctaatagtccacaaagggtctgattatttccttttccctaaaacacagcc-at-ccggtaaaaggccACga i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20816077 353 + 189454096 ATATATTGCATTATAGATAGATAGAAAAACAACTGTCTTGTTCCTTTAGCTTATGAGTTCTTTGAGGATTAAAAAGAGTATCTTATTCAaatttgggaattttgctagttgctgagtatgtctattctaattatacattctggaactcggtaaaaaactacaggatagatttggggac-------ccactg---gacc------cattaatcatatgacttccatcagc-cctactctcactagtcaaccacagtgacatgcttgtatcttctggaattaatagcagtttagaatcaaggtctaatagtccacaaagggtctgattatttccttttccctaaaacacagcc-at-ctggtaaaaggctacga i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16406360 353 + 178775436 gtATATTGcattatagatagatagaaaaacAACTGTCTTGTTCCTTTAGCTTATGAGTTCTTTGAGGATTAAAAAGAGTATCTTATTCAAATTTGGGAATTTTGCTAGTTGCTGAGTATGTCTATTCTAATTATACATTCTGGAACTGGGTAAAAAACTACAGGATAGATttggggac-------ccactg---gacc------cattAATCATATGACTTCCATCAGC-CCTACTCTCACTAGTCAACCACAGTGACATGCTTGTATCTTCTGGAATTAATAGCAGTTTAGAATCAAGGTCTAATAGTCCACAAAgggtctgattatttccttttccctaaaaCACAGCC-AT-CCGGTAAAAGGCCATGA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19890461 349 - 48547382 GTATATTGCATT----ATAGATAGAAAAACAACTGTCTTGTTCCTTTAGCTTATGAGTTCTTTGAGGATTAAAAAGAGTATCTTATTCAaatttgggaattttgctagttgctgagtatgtctattctaattatacattctggaactgggtaaaaaactacaggatagatttggggac-------ccactg---gacc------cattaatcatatgacttccatcagc-cctactctcactagtcagccacagtgacatgcttgcatcttctggaattaatagcagtttagaatcaaggtctaaaagtccccaaagggtctgattatttccttttccctaaaacacagcc-at-ctggtaaaaggccatga i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21248377 351 - 190850796 GTATCTTCTATTATACATAGATAGAAAAATACCTATCTCATTCCTTTAGCTTATGGGTTCTTTGAGGATTAAAAAGAGTATCTTGTTCAaatttgggaattttgctagttgctcagtatgtctattctaattatatattctggaaccg---aaaaaactacaggatagatttggggac-------ccactg---gaca------tattaatcacatgacttccatcagc-cctactctgactagtcaaccacagtgacatttttgtatcttctggaacggataacagtttagagttaatgtttaatagttcccaaagggtctgattcttttcttttccctaatccacagtc-actccagtaaaaggccatga i calJac3.chr3 C 0 C 0 s canFam3.chr3 3822371 362 - 91889043 ATATACCCCTTTGTGTACAGATGAGAAAATACCAGTCTCACTC-TTTAGTTTGTGGATTTTCTGAGAGTTAAACA--GTATCTTATTc-aattggggaattttgccacttgctaagcatgactgttccaatagcagattttgaacctgggggaataaccacgagatgggttccaggaccttgcagccactgtgagacagaattgcattcatcatctgacctccatgagctcttactccg----gtagaccacagtgacat-tttgggcctcccagaattagtggcacttcacagccagtgtccaataatcccttaaagctctgaatatttcttttcttctagtgcacagtcaac-ctggtaaaaggccatag i canFam3.chr3 I 230 I 163 e mm10.chr5 49235244 3237 + 151834684 I a score=5440645.000000 s hg38.chr4_KI270790v1_alt 125865 1658 + 220246 tttggggt------tagaattttgttcacttgatctagaactctttgacttacacagatcaagtaagaa-ttagtagcattcc----------catccatttaacttctaggaactctatcatcaactagccaatgccataggactgcccatattcaac-----tattctgattgccgctttgactctgctttccatcatggtaacaacacccatcttatcttgggcgactgagggctgccacttggccagcccctgccaccccaggattcaattactcccattacatttaagtttccttattcagtggtagcagttcccactgtattttccggcagac----aaaagcaatcacaaagctcttcaaggatgcaggggtgcccctcataaacttgttttttacacttaggatgaaaagtgtgccctctgggtcatcccagtgtaagtgagcagatcttaaatgacacattcaatctaacattccagtctccctaaaccttggaatctcttattctgcagtacaggaaagcagttctagcatttcaagttaaattactgtgggccagcttctgatccatgttccag--------c------------caaccaaccaaccaaccaaccaaccaaactgatacagccctttctcaatccctgagctacagcattaaattcagaatctctgcttaatgagtttctttggatttgggaggcaatacatttcttattctggtttgctaccccagcctagtaacagaatgacccaaaaagctgct--------------------aacaagagaaggctctgcaacaggtctaggctgccata-taggtgccctgccactggggtcatatgatccagcagattcaatggtgtttaaattgttggtgacagatagggattctacttaaaatctttgacaggaccatacaggacaaccatagtgcatactc--agaatttcagaccaaagccctgccactctctgcagataactactttc--cttttgagaaactgcttttggtctactactgag------------ctaaaagcctaaccatggcacaccaagttcttctgcaaa------ctgagctgctcctcatgaactggccgttacctgtcctacc------------accaaggcataaagttggctgtacacaacagcattccttcatcaaaccaagaagtggtatatatgtgatcaggcccaagagggccctaaatgcac----aagttacatgaagatgtgtcccaaatgcccatggtccccact-atgctatattactacatctcttacaacctgcacctatggcctcatgtggagtactccactgtcagttgac-----aaacttgggtctggtttacagatggttgtgcataatatacaggcacatacaa---tagacagccacagcactacagtccttttctagcacatacctgaaggataatggtgaaggaaaatcctctcaggcagcagaaccccgagtagtgcatctagttgttcactttgtttggaaggagaaa----------tgcaaatatataccaatttatgggctgtggccaatgatggtttctctggatggtcaaggacttggaagaaatctgattggaaaattggttcaaggaagtttggggatgaggtatgtggatagacatctctgaatgggtgaaaat-catgaagatatttgtgtgccatgtgaatgctaaccaaagagagatgtcaggagaggagggactttaataatcac s panTro4.chr4 21512370 1666 + 193495092 tttggggt------tagaattttgttcacttgatctagaactctttgacttacacagatcaagtaagaa-ttagtagcattcc----------catccatttaacttctaggaactctatcatcaactagccaatgccataggactgcccacatccaac-----tattctgattgccgctttaactctgctttccatcatggtaacaacacccatcttatcttgggcgactgagggctgccacttggccagcccctgccaccccaggattcaattactcccattacatttaagtttccttattcagtggtagcagttcccactgtattttccggcagac----aaaagcaatcacaaagctcttcaaggatgcaggggtgcccctcataaacttgttttttacacttaggatgaaaagtgtgccctctgggtcatcccagtgtaagtgagcagatcttaaatgacacattcaatctaacattccagtctccctaaaccttggaatctcttattctgcagtacaggaaagcagttctagcatttcaagttaaattactgtgggccaccttctgatccatgttccagccaaccaac------------caaccaaccaaccaaccaaccaaccaaactgatacagccctttctcaatccctgagctacagcattaaattcagaatctctgcttaatgagtttctttggatttgggaggcaatacatttcttattctggtttgctaccccagcctagtaacagaatggcccaaaaagctgct--------------------aacaagagaaggctctgcaacaggtctaggctgccata-taggtgccctgccactggggtcatatgatccagcagattcaatggtgtttaaattgttggtgacagatagggattctacttaaaatctttgacaggaccatacaggataaccatagtgcatactc--agaatttcagaccaaagccctgccactctctgcagataactactttc--cttttgagaaactgcttttggtctactactgag------------ctaaaagcctaaccatggcacaccaagttcttctgcaaa------ctgagctgctcctcatgaactggccgttacctgtcctacc------------accaagccataaagttgtctgtacacaacagcattccttcatcaaaccaagaagtggtatatatgtgatcaggcccaagagggccctaaatgcac----aagttacatgaagatgtgtcccaaatgcccatggtccccact-atgctatattactacatctcttacaacctgcatctatggcctcatgtggagtattccattgtcagttgac-----aaacttgggtctggtttacagatggttgtgcatgatatacaggcacatacaa---tagacagccgcagcactacagtacttttctagcacatacctgaaggataatggtgaaggaaaatcctctcaggcagcagaaccccgagtagtgcatctagtttttcactttgtttggaaggagaaa----------tgcaaatatataccaatttatgggctgtggccaatgatggtttctctggatggtcaaggacttggaagaaatctgattggaaaattggttcaaggaagtttggggatgaggtatgtggatagacatctctgaatgggtgaaaat-catgaagatatttgtgtgccatgtgaatgctaaccaaacagagatgtcaggagaggagggactttaataatcac i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21689464 1663 + 198332218 tttggggt------tagaattttgttcacttgatctagaactctttgacttacacagatcaagtaagaa-ttagtagcattcc----------catccatttaacttctaggaactctatcatcaactagccaatgccataggactgcccatatccaac-----tattctgattgccgctttgactctgctttccatcatggtaaccacacccatcttatcttctgcgactgagggctgccacttggccagcccctgccaccccaggattcaattactcccattacatttaagtttcctcatgcagtggtagcagttcccactgtattttccggcagacaaagaaaagcaatcacaaagctcttcaaggatgcaggggtgcccctcataaacttgttttttacacttaggatgaaaagtgtgtcctctgggtcatcccagtgtaagtgagcagatcttaaatgacacattcaatctaacattccagtctccctaaaccttggaatctcttattctgcagtacaggaaagcagttctagcatttcaagttaaattactgtgggccaccttctgatccatgttccag----ccaac------------caaccaaccaaccaaccaaccaaccaaactgatacagccctttctcaatccctgagctacagcattaaattcagaatctctgcttcatgagtttctttggatttgggaggcaatacattccttattctggtttgctataccagcctagtaacagaatgacccaaaaagctgct--------------------aacaagagaaggctctgcaacaggtctaggctgccata-taggtgccctgccaccggggtcatatgatccagcagattcaatggtgctcaaattgttggtgacagatagggattctatttaaaatctttgacaggaccatacaggataatcatagtgcatattc--agaatttcagaccaaagccctgccactctctgcagataactactttc--cttttgagaaactgcttttggcctgctactgag------------ctacaagcctaaccatggcacaccaagttcttctgcaaa------ctgagctgctcctcatgaactggccgttacctgtcct---------------accaagccataaagctggctgtacacaacagcattccatcatcaaaccaagaagtggtaaatatgtgatcaggcccaagagggccctaaatgcac----aagttacatgaagatgtgtcccaaatgcccatggtccccact-atgctatattactacatctcttacaacctgcacctatggcctcatgtggagtactccactgtcagttgac-----aaacttgggtctggtttacagatggttgtgcatgatatacaggcacatacaa---tagacagccgcagcactacagtccttttctagcacatacctgaaggataatggtgaaggaaaatcctctcaggcagcagaatcctgagtagtgcatctagttgttcactttgtttggacggagaaa----------tgcaaatatataccaatttatgggctgtggtcaatgatggtttctctggatggtcaaggacttggaagaaatgtgattggaaaattggttcaaggaagtttgggaatgaggtatgtggacagacatctctgaatgggtgaaaat-catgaagatatttgtgtgccatgtgaatgctaaccaaagagagatgtcaggagaggagggactttaataataac i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20301774 1678 - 85365473 tttggggt------tagaattttgttcacttgatctagaactctttgacttacacagatcaagtaagaa-ttagtagcattcc----------catccatttaacttctaggaactctatcatcaactagccaatgccataggactgcccatatccaac-----tattctgattgccgctttgactctgctttccatcatggtaaccacacccatcttatcttgggcgactgagggctgacacttggccagcccctgccaccccaggattcaatgactcccattacatttaagtttccttattcagtggtagcagttcccactgtattttccggcagacaaagaaaagcgatcacgaagctcttcaaggatgcaggggtgcccctcataaacttgttttttacagttaggatggaaagtgtgtcctctgggtcatcccagtgtaagtgagcagatcttaaatgacacattcaatctaacattccagcctccctaaaccttggaatct-ttattctgcggtacaggaaagcagttctagcatttcaagttaaattactgtgggccaccttctgatccatgttccagccaaccaaccaaccaatcaaacaaccaaccaaccaaccaaccaaccaaactgatacagccctttctcaattcctgagctacagcattaaattcagaatctctgcttaatgagtttctttggatttgggaggcaatacattccttattctggtttgctaccccagcctagtaacagaatgacccaaaaagctgct--------------------aacaagagaaggctctgcaacaggtctaggctgccata-taggtgccctgccactggggtcatacgatccagcagattcaatggtgtttaaattgttggtgacagatagggattctatttaaaatctttgacagaaccatacaggataatcatagtgcatactc--agaatttcagaccaaagccctgccactctctgcagataactactttc--cttttgagaaactgcttttggcctgctactgag------------ctaaaagcctaaccatggcacaccaagttcttctgcaaa------ctgagctgctcctcatgaactggctgttacctgtcct---------------accaagccctaaagttggctgtacacaacagcattccatcatcaaaccaggaagtggtatatatgtgatcaggcccaagagggccctaaatgcac----aagttacatgaagatgtgtcccaaatgtccatggtccccact-atgctatattactacatctcttacaacctgcacctatggcctcatgtggagtactccactgtcagttgac-----aaacttgggtctggttcacagatggttgtgcatgatatacaggcacatacga---tagacagccgcagcactacagtccttttctagcacatacctaaaggataatggtgaaggaaaatactctcagtcagcagaaccccgagtagtgcagctagttgttcactttgtttggaaggagaaa----------tgcaaatatataccaatttatgggctgtggccaatgacggtttctctggatggtcaaggacttggaagaaatgtgattggaaaattggttcaaggaagtttggggatgaggtatgtggatagacatctctgaatgggtgaaaat-catgaagatatttgtgtgccatgtgaatgctaaccaaagagagatgtcaggagaggagggactttaatagtcat i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16767113 1651 + 184069350 tttggagt------tagaattttgttcacttgatctagaactctttgacttacacagatcaagtaagaa-ttagtagcattcc----------cattcatgtaacttgtaggaactctatcatcaactagccaatgccataagactgcccatatccaac------attctgattgccgctttgactctgctttccatcatggtaaccacacccatcttatcttgggcgactgagtgctgccacctggccagcccctgccaccccaagattcaattactcccattacatttaagtttccttatccagtggtagcagttcccactgtattttccagcagacaaagaaaagcgatcacaaagctcttcaaggacgctggggcgtccctcataaatttatttcttacagttaggatgaaagatgtgtcctctgggtcatcccagggtaagtgagcagatcttaaatgacacattcaatctaacattccagtctccctaagtcttggaatctctccttctgcggtacaggaaagcagttctagtatttcaagttaaattactgtgggccaccttttgatccacgttccag--------------------------------ccaaccaaccaaccaaaatgatacagccctttctcaatccctgagctacaacattaaattcagaatctctgcttaatgagtttctttggatttgggaggcaatacattccttattctgttttgcta-cccagcctagtaacagaatgacacaaaaagctgct--------------------aacaagagaaggctctgcaacgggtctaggctgccaca-taggtgctctgccactggggtcatacgatccagcagattgaatggtgtttaaagtgtcgataacagatagggattctatttaaaatctctgacaggaccatacaggatgatcatagtgcatactc--agaatttcataccaaagccctgccactctccgcagataactgctttc--cttttgagaaactgtttttggcctgctactgag------------ctaaaagcctaaccattgcccaccaagttcctctgcaaa------ctgagctgctccttatgaactggctgttacctgtcct---------------accaagccataaagttggctgtacacagcagcattccatcatcaaaccaagaagtggtatatatgtgatcaggcccaagagggccctaaatgcac----aagttacatgaagaggtgtcccaaatgcccgtggtccccatt-atattgtattactacatctcctacaacctgcacctatggcctcatgtggagtactccactgtcagttgat-----aaacttgggtctggtttatagatggttgcacgtaatatacaggcacatacaa---tggacagctgcagcactacagcctttttctagtacatacctgaaggataatggtgaaggaaaatcctctcaggtggcagaacctggagtagtgcatctagttgttcactttgctcggaaggagaaacggccatatatgcaaatatataccaatttatggactgtggtcaat---ggtttctctggatggtcaagtacttggaagaaatgtgattgcaaaattggttcaaggaagtttgaggaataggtatgcggataaatatctctgaatgggcgaaaat-catgaagatatttgtgtgccatgttaatgctaaccaaagagagatgtcaggagagga-ggactttaataaccac i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20816430 1651 + 189454096 tttggagt------tagaattttgttcacttgatctagaactctttgacttacacagatcaagtaagaa-ttagtagcattcc----------cattcatgtaacttgtaggaactctatcatcaactagccaatgccataagactgcccatatccaac------attctgattgccgctttgactctgctttccatcatggtaaccacacccatcttatcttgggcgactgagtgctgccacctggccagcccctgccaccccaagattcaattactcccattacatttaagtttccttatccagtggtagcagttcccactgtattttccagcagacaaagaaaagcgatcacaaagctcttcaaggacgctggggcgtccctcataaatttatttcttacagttaggatgaaagatgtgtcctctgggtcatcccagggtaagtgagcagatcttaaatgacacattcaatctaacattccagtctccctaagtcttggaatctctccttctgcggtacaggaaagcagttctagtatttcaagttaaattactgtgggccaccttttgatccacgttccag--------------------------------ccaaccaaccaaccaaaatgatacagccctttctcaatccctgagctacaacattaaattcagaatctctgcttaatgagtttcttcggatttgggaggcaatacattccttattctgttttgcta-cccagcctagtaacagaatgacacaaaaagctgct--------------------aacaagagaaggctctgcaacgggtctaggctgccaca-taggtgctctgccactggggtcatacgatccagcagattgaatggtgtttaaagtgtcgataacagatagggattctatttaaaatctctgacaggaccatacaggatgatcatagtgcatactc--agaatttcataccaaagccctgccactctccgcagataactgctttc--cttttgagaaactgtttttggcctgctactgag------------ctaaaagcctaaccattgcccaccaagttcctctgcaaa------ctgagctgctccttatgaactggctgttacctgtcct---------------accaagccataaagttggctgtacacagcagcattccatcatcaaaccaagaagtggtatatatgtgatcaggcccaagagggccctaaatgcac----aagttacatgaagaggtgtcccaaatgcccgtggtccccatt-atattgtattactacatctcctacaacctgcacctatggcctcatgtggagtactccactgtcagttgat-----aaacttgggtctggtttatagatggttgcacgtaatatacaggcacatacaa---tggacagctgcagcactacagcctttttctagtacatacctgaaggataatggtgaaggaaaatcctctcaggtggcagaacctggagtagtgcatctagttgttcactttgctcggaaggagaaacggccatatatgcaaatatataccaatttatggactgtggtcaat---ggtttctctggatggtcaagtacttggaagaaatgtgattgcaaaattggttcaaggaagtttgaggaataggtatgcggataaatatctctgaatgggcgaaaat-catgaagatatttgtgtgccatgttaatgctaaccaaagagagatgtcaggagagga-ggactttaataaccaC i macFas5.chr5 C 0 I 965 s papAnu2.chr5 16406713 1651 + 178775436 TTTGGAGT------TAGAATTTTGTTCACTTGATCTAGAACTCTTTGACTTATACAGATCAAGTAAGAA-TTAGTAGCATTCC----------CATTCATGTAACTTGTAGGAACTCTATCATCAACTAGCCAATGCCATAAGACTGCCCATATCCAAC------ATTCTGATTGCCGCTTTGACTCTGCTTTCCATCATGGTAACCACACCCATCTTATCTTGGGCGACTGAGTGCTGCCACCTGGCCAGCCCGTGCCACGTCAGGATTCAATTACTCCCATTACATTTAAGTTTCCTTATCCAGTGGTAGCAGTTCCCACTGTATTTTCCAGCAGACAAAGAAAAGCGATCACAAAGCTCTTCAAGGACGCTGGGGCGTCcctcataaatttatttcttacagttaggATGAAAGATGTGTCCTCTGGGTCATCCCAGGGTAAGTGAGCAGATCTTAAATGACACATTCAATCTAACATTCCAGTCTCCCTAAGTCTTGGAATCTCTCCTTCTGCGGTACAGGAAAGCAGTTCTAGCATTTCAAGTTAAATTACTGTGGGCCACCTTTTGATCCACGTTccag--------------------------------ccaaccaaccaaccaaaatgATACAGCCCTTTCTCAATCCCTGAGCTACAACATTAAATTCAGAATCTCTGCTTAATGAGTTTCTTTGGATTTGGGAGGCAATACATTCCTTATTCTGGTTTACTA-CCCAGCCTAGTAACAGAATGACACAAAAAGCTGCT--------------------AacaagagaaggctctgcaacgGGTCTAGGCTGCCACA-TAGGTGCTCTGCCACTGGGGTCATACGATCCAGCAGATTGAATGGTGTTTAAAGTGTCGATAACAGATAGGGATTCTATTTAAAATCCCTGACAGGACCATACAGGATGATCATAGTGCATACCC--AGAATTTCATACCAAAGCCCTGCCACTCTCCGCAGATAACTGCTTtc--cttttgagaaactgtttttagCCTGCTACTGAG------------CTAAAAGCCTAACCATTGCCCACCAAGTTCCTCTGCAAA------CTGAGCTGCTCCTTATGAACTGGCTGTTACCTGTCCT---------------ACCAAGCCATAAAGTTGGCTGtacacagcagcattccatcatcaaaccaagaagtggtatatatgtgatcagGCCCAAGAGGGCCCTAAATGCAC----AAGTTACATGAAGAGGTGTCCCAAATGCCCGTGGTCCCCACT-ATATTGTATTACTACATCTCCTACAACCTGCACCTATGGCCTCATATGGAGTACTCCACTGTCAGTTGAT-----AAACTTGAGTCTGGTTTATAGATGGTTGCACGTAATATACAGGCACATacag---tggacagctgcagcactacagccttTTTCTAGTACATACCTGAAGGATAATGGTGAAGGAAAATCCTCTCAGGTGGCAGAACCTGGAGTAGTGCATCTAGTTGTTCACTTTGCTCGGAAGGAGAAACGGCCATATGTGCAAATATATACCAATTTATGGACTGTGGTCAAT---GGTTTCTCTGGATGGTCAAGGACTTGGAAGAAATGTGATTGCAAAATTGGTTCAAGGAAGTTTGAGGAATAGGTATGCGGATAAATATCTCTGAATGAGCGAAAAT-CATGAAGATATTTGTGTGCCATGTTAATGCTAACCAAAGAGAGACGTCAGGAGAGGA-GGACTTTAATAACCAC i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19890810 1662 - 48547382 tttggagt------tagaattttgttcacttgatctagaactctttaacttacacagatcaagtaagaa-ttagtagcattccattagttaaacatttatttaacttttaggaactctatcatcaactaaccaatgccataagaccgcccatatccaac------attctgattgccactttgactccgctttccatcatggtaaccacacccatcttatcttgggcgactgagtgctgccacctggccagcccctgccaccccaggattcaattactcccattacatttaagtttccttatccagtggtagcagttcccactgtattttccagcagacaaagaaaagcgatcacaaagctctttaaggatgctggggcgcccctcataaatttgtttcttacagttaggatgaaagatgtgtcctctgggtcatcccagggtaagtgagcagatctcaaatgacacattcaatctaacattccagtccccctaagtcttggaatctcttcttctgcagtacaggaaagcagttctagcatttcaagttaaattactgtgggccaccttttgatccacgttccag--------------------------------ccaaccaaccaaccaaaatgacacagccctttttcaatccctgagctacaacattaaattcagaatctctgcttaatgagtttctttggatttgggaggcaatacattccttattctgatttgctaccccagcctagtaacagaatgacacaaaaagctgct--------------------aacaagagaaggctctccaacaggtctaggctgccata-taggtgctctgccactgggatcatatgatccagcagattgaatgatgtttaaagtgtcgataacagatagggattctattgaaaatctctgacaggaccatacaggatgatcatagtgcatactc--agaatttcataccaaagccctgccactctccgcagataactgctttc--cttttgagaaactgtttttggcctgctactgag------------caaaaagcctaaccattgcccaccaagttcctctgcaaa------ctgagctgctccttatgaactggctgttacctgtcct---------------accaagccataaagttggctgtacacagcagcattgcatcatcaaaccaagaagtggtatatatgtgatcaggctcaagagggtcctaaatgcac----aagttacatgaagaggtgtcccaaatgcccgtggtccccact-atattatattactatgtctcctacaacctgcacctgtggcctcatgtggagtactccactgtcagttgat-----aaacttgggtctggtttatagatggttgcacgtaatgtacaggcacatacag---tggacaactgcagcactacagcctttttctagcacatatctgaaggataatggtgaaggaaaatcctgtcaggtggcagaacctagagtagtgcatctagctgttcactttgctcggaaggagaaacggccatatatgcaaatatataccaatttatggactgtggtcaat---ggtttctctggatggtcaaggacttggaagaaatgtgattggaaaattggttcaaggaagtttgaggaataggtatgcggataaatatctctgaatgggcgaaaat-catgaagatatttgtgtgccatgttaatgctaaccaaagagagatgtcaggagagga-ggactttaataagcac i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21248728 1640 - 190850796 tttggagt------tagaattttgttaacttgacctagaattctttgacttacccagataaaataagaa-ttagtagctttcc----------catccttttaccttctagaaactctatcatcaactag-caatgccataggcctgcccatatccaac-----ttttctgattgctgctttgactctgctttccatcgtggtaaccgcacccatgttatcttaggcgactgagtgctgccacttggccagcccctgtcaccctaggattcagttactctgattacatctaagtttcctcattcagtggtagcagttcccactgcagttcctggcagacaaagaaaagctatcacaaagctcttcaaggatgctggggc-cccctcacaaatttgtttctcacatttatgttgaaaggtgtgtcctctggatcat-ccagggtgagtgagcagatcttaaatgacatattcaat-taacattccagtttccctaagccttggaatctcttcttctgcagtacaggaaagcaggtctagcatttcaagttaaattactgtgggctgccttttgatccatgttccag------------------------ccaaccagccaaccaaccaagcaaactgatatagccctttctaattccctgagctacaacaataaattcagaatctctgcttcatgagtttcttcagatttgggaagcaatatattccttatttgggtttggtaccccagcctagttacagaatgactcaaaaagctgtt--------------------aacaagaaaaggctctgcaacaggttcaggctgtcata-tagctgctctgccactggggtcctatgatccagcagattcaatggtgtttaaagtgtcagtgacagatagggattctatttaaaatctttgacaggaccatacaggataatcatagtgcatattc--agaacttcagatcaaagctctgacattctttgcagataactgtgttc--cttttgagaaactgcttttggcctgctactaag------------ctgaaagcttaaccatggcccaccaagttcctctacaac------ctgagctgctcctcatgaactggctgttccctgtcct---------------agcaagctataaatttgactgtacatagcagcattccatcatcaaaccaagaaatg------atgtgatcagtcccaagagggcccttaatgcac----aagttacatgaagatgtgtcccaaatgtccatggtccccactcctgttatattactatgtctcttacaacctgcacctatggcctcatgtggagtactccacggtcagttgac-----aaacttgggtctggtttatagatggttgtacgtg------------atacag---tggacatccacaacactacagcccttttctagcacatacctgaaggataatggtgaaagaaactcctctcagatggcagaaccttgagtagtgcatctgattgttcactttgcttggaaggagaaatggccatatatgcaaatacatgccaattttggggctatgtccagt---ggtttctctggatggtcaaagacttggaagaaatgtgattgaagaattggttcaaggaagtttggggatgacgtatgtggatagacatttctgaatgagagaaaat-catgaatatagttgtgtgccatgtgagtgctggccaaagagtgatgtcagaagagga-ggaatttaataattgg i calJac3.chr3 C 0 C 0 s canFam3.chr3 3822896 1686 - 91889043 tttagggttcaagatagacttttgttcacttgacccagaaatcttttactt----agatcaagtaagaatttagtaggctacc----------catat-tttaactttgagaaactccacaatcaacgagccaatgccagaggtctctgtgagtcagactactctattgtgattgcagctttgactctgctttccgttacagtgaccacgcccaccct-ccctgggcaaccgagtgccaccacttt----gctcttgccaccccgggatccaattacccccactgcattttggtttcccaattcagtgacagcagttcccattgcattgtctggactacagacaaaagtgatcagaaagcccgtcaaggttgctggtgtctgtctcacaaatttctctgtcaaagtcacggtgaaaggtgtgtcctctggaacctcctaaggtgggtgaacagatcttgaatgacaaacccattataataaatcaagcttccaaaacctctgaa---cgccttgtgttatttaccagagcagctctagtattttaagttaatttactatgggccaccttttggtccacattttaa--------------------------------ccaaccaatcaaccgaactattacagccctttctaatttcctgagacataactgtgaatctagaatctctgcccagtaggccTCT--GGGTTCtg----------------------ggtgtgctactctggcccatttactaaatgatcc-caaagttgctagttttgagtgggggcccagaaaaaaagaaggttctttcacagattcaggcttccataccagctgctcttccatttgggccataggacacagtagattcaatgatgtttgaagtatcagtggcagacagggatgctgtttggagttcttggcagg-ccctattggtaaactgcaacacaggctcttagaattttggatcaaagccctactattcttttcagataattactctcttctttcgataaacagtttttggcttcctcctgggtctcagtagagactccgtgcttttccatggaccaccaagttac-caccaaatgattcctgagctacctatcttgatgtgaatattatctgagtcaataataaccaaaaaattgagccac-aagttgctcatgtgcagcagcatgcgatcgttaaat--aaaagtggtatatgcgtgatcaggtttgggcaggccctgaaggtacaagtaagttatgtgattaagtgacccacatgcccacagtccccatgccggctgtactatcttctctctttcagccttcacatatgaccttcacaggagtcttatgc--tcagttgacagagaaaatgtaggcttggtttacaagtgattccacacagtatgtaggatcagccaaaagtagacagctgcagtactacaacccttcg-ggggacatccctgaataacggtggtgagagaaacctttct-aacaagcagaacttggagcagtgtacctggttgtgcattttgcttggaagaagcaatggccagatgttcaactatatactgattcatggtttgtgactaat---ggcttggctagatgatcagggactcgaaaggaacatgattaaaacactgatgacaag-agtcaggggatgaggtatgtggataggtctctgtgagtgggtaaaaatatgtgaagata-ttatgccccatgtgaatcctaatcaaagagtgacctt--gacagga-ggattttaatgatcaa i canFam3.chr3 I 163 C 0 e mm10.chr5 49235244 3237 + 151834684 I a score=1366999.000000 s hg38.chr4_KI270790v1_alt 127523 492 + 220246 atagataggatgg-catgttctgtggataccagtcagcctcatttttgcagccactcttattgcccaatgtattcataagcaaagtggacattgtagcagggacgtaggttatgcattggctcagaaacacgaacttccctctccaaggctgacctacttatagccactgctgagtgcccaatgtgccagcagcaaagaccaacactgagttctcaatatggcaccattcctcagggtgatcagccagctacctggtggcaggttgattacattggactgcttccatcatggaaggggggtagtgctatgttcttactagaatagttacttactctggatattgatttgccttttctgcacacgatgtttctgccaacactacctactatctataaacttacagaatgccttatgccctgccatagcattccacacagcactccttctcatcaagaaaattacttcatagtaaacaaagtgtggcaatgagac s panTro4.chr4 21514036 492 + 193495092 gtagataggatgg-catgttctgtggataccagtcagcctcatttttgcagccactcttattgcccaatgtattcataagcaaagtggacattgtagcagggacgtaggttatgcattggctcagaaacacgaacttccctctccaaggctgacctacttatagccactgctgagtgcccaatgtgccagcagcaaagaccaacactgagttctcaatatggcaccattcctcagggtgatcagccagctacctggtggcaggttgattacattggactgcttccatcacggaaggggggtagtgctatgttcttactggaatagttacttactctggatattgatttgccttttctgcacacaatgtttctgccaacactacctactatctataaacttacagaatgccttatgccctgccatagcattccacacagcactccttctcatcaagaaaattacttcatagtaaacaaagtgtggcaatgagac i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21691127 492 + 198332218 atagataggatgg-catgttctgtggataccagtcagcctcttttttgcagccactcttattgcccaatgtattcataagcaaagtggacactgtagcagggacataggttacgcattggctcagaaacacgaacttccctctccaaggctgacctacttatagacactgctgagtgcccaatgtgccagcagcaaagaccaacactgagttctcaatatggcaccattcctcagggtgatcagccagctacctggtggcaggttgattacattggactgcttccatcatggaaggggggtagtgctatgttcttactggaatagttacttactctggatattgatttgccttttctgcacacaatgtttctgccaacactacctaccatctataaacttacagaatgccttatgccctgccatagcattccacacagcactgcttctcatcaagaaaattacttcatagtaaacaaagtgtggcgatgagac i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20303452 492 - 85365473 gtggataggatgg-catgttctgtggataccagtcagcctcttttttccagccactcttattgcccaatgtattcatgagcaaagtggacattgtagcagggacgtaggttacgcattggctcagaaacacgaacttccctctccaaggctgacctacttatagccactgctgagtgcccaatgtgccagcagcaaagaccaacactgagttctcaatatggcaccattcctcagggtgatcagccagctacctggtggcaggttgattacattggactgcttccatcatgggaagggggtagtgctatgttcttaccgggatagttacttactctggatattgatttgccttttctgcacgcaatgtttcttccaacactacctaccatctataaacttacagaatgccttaagctctgccatagcattccacacagcactgcttctcatcaagaaaattacttcatagtaaacaaagtgtggcaatgagac i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16768764 492 + 184069350 gtggataggatgg-catgttctgtggataccagtcagcctcttttttccagccacttttattgcccaatgtattcatgagcaaagtggacattgtagcagggatgtagattatgcattggctcagaaacacgaactttcctctccaaggctgacctacttatagccactgctgagtgcccaatgtgccagcagcaaagaccaacactgagttctcaatatggcaccattcctcagggtgatcagccagctacctggtggcaggttgattacattggactgcttccatcatggaaggggggtagtgctatgttcttactggaatagttacttactctggatattgatttgccttttctgcacacaatgtttctgccaacactacctaccatctataaacttaccgaatgccttatgccctgccatagcattccacatagcactgcttctcatcaagaacattacttcatagtaaacaaagcgtggcaatgagac i rheMac3.chr5 C 0 C 0 s papAnu2.chr5 16408364 492 + 178775436 GTGGATAGGATGG-CATGTTCTGTGGATACCAGTCAGCCTCTTTTTTCCAGCCACTTTTATTGCCCAATGTATTCATGAGCAAAGTGGACATTGTAGCAGGGATGTAGATTATGCATTGGCTCAGAAACATGAACTTTCCTCTCCAAGGCTGACCTACTTatagccactgctgagtgcccaatgtGCCAGCAGCAAAGACCAACACTGAGTtctcaatatggcaccattcctcagggtgatcagccagctacctggtggcaggttgattacattGGACTGCTTCCCTCATGGAAGGGGGGTAGTGCTATGTTCTTACTGGAATAGTTACTTACTCTGGATATTGATTTGCCTTTTCTGCACACAATGTTTCTGCCAACACTACCTACCATCTATAAACTTACCGAATGCCTTAAGCCCTGCCATAGCATTCCACATAGCACTGCTTCTCATCAAGAACATTACTTCATAGTATACAAAGCGTGGCAATGAGAC i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19892472 492 - 48547382 gtggataggatgg-catgctctgtggataccagtcagcctcttttttccagccacttttattgcccaatgtattcatgagcaaggtggacatcgtagcagggatgtagattatgcattggctcagaaacacgaactttcctctccaaggctgacctacttatagccactgctgagtgcccaatgtgccagcagcaaagaccaacactgagttctcaatatggcaccattcctcagggtgatcagccagctacctggtggcaggttgattacattggactgcttccatcatggaaggcgggtagtgctgtgttcttactggaatagttacttactctggatattgatttgccttttctgcacacaatgtttctgccaacactacctaccatctataaacttaccgaatgccttatgccctgccatagcattccatatagcactgcttctcatcaagaacattacttcatagtaaacaaagcgtggcaatgagac i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21250368 492 - 190850796 gtgaataggatgg-catattctgtagataccagtcagcctcttttttctagccactcgtattacccaatgtattcacgaaagaagtggacattgtagcagggatgtaggttatgcattggctcagaaacatgaacttccctctccaaggctgacctacttatagccactgctgagtgtccaatgtgccagcagcaaagaccaacactgcgttctcaatatggcaccattcctcagggtgatcagccagctacctggtggcaggttgattacattggactgcttccatcatgaaaggggggtagtgttatgttctcaccggaatagttacttactctggatattgatttgccttttctgaacacagtgtttccgccaacactacctatcatctataaacttacagaatgccttatgccctgccatagcattccatacagcactgcttctcatcaagaaaactacttcacagtaaacaaagtatggcaatgggac i calJac3.chr3 C 0 C 0 s canFam3.chr3 3824582 479 - 91889043 atggatgggatggacccattctgtgggcaccggtcataatcttcccattgaaccctagcagggcccacaggattcatgaacaaagtggccaagtggacagggatgaaggttttgcaaggctgtagcaacatgtaccccattcacaaggtctatcttgc-tatggccaatgctatatgcttaatcggccagcagcagagatcaacaccaagtccccagtttggcaccattccctgaactgatcagacagttacctgagggcagattgattatattggatgacttccatcacaaaaa-----cagcattttcttattatcagaatagaca---gctctggcta-gggtttgcctcccctgcataagatacttctgccaaaactaccc----tccatggacttacggaatgccttttccatcaccatggtattccacacagcactatttctcaccaaatgatccacttcacagcgaatgaaatatggcagtggggc i canFam3.chr3 C 0 C 0 e mm10.chr5 49235244 3237 + 151834684 I e macFas5.chr5 20818081 965 + 189454096 I a score=16994.000000 s hg38.chr4_KI270790v1_alt 128015 25 + 220246 cacaatcatggaattcataggcctt s panTro4.chr4 21514528 25 + 193495092 cacgatcatggaattcacaggcctt i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21691619 25 + 198332218 catgatcatggaattcatgggcctt i ponAbe2.chr4 C 0 C 0 s calJac3.chr3 21250860 25 - 190850796 catcgtcatggaattcattggtctt i calJac3.chr3 C 0 C 0 s canFam3.chr3 3825061 25 - 91889043 catggtcatggaattcactggtgtt i canFam3.chr3 C 0 C 0 e mm10.chr5 49235244 3237 + 151834684 I e chlSab2.chr27 19892964 0 - 48547382 C e macFas5.chr5 20818081 965 + 189454096 I e rheMac3.chr5 16769256 0 + 184069350 C e papAnu2.chr5 16408856 0 + 178775436 C e nomLeu3.chr20 20303944 0 - 85365473 C a score=8244.000000 s hg38.chr4_KI270790v1_alt 128040 19 + 220246 -atcatatccccaaccatcc s panTro4.chr4 21514553 19 + 193495092 -atcatatccccaaccatcc i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21691644 19 + 198332218 -atcatatccccaaccatcc i ponAbe2.chr4 C 0 C 0 s canFam3.chr3 3825086 20 - 91889043 aactatgtttcccaccatcc i canFam3.chr3 C 0 I 970 e mm10.chr5 49235244 3237 + 151834684 I e chlSab2.chr27 19892964 0 - 48547382 C e macFas5.chr5 20818081 965 + 189454096 I e rheMac3.chr5 16769256 0 + 184069350 C e calJac3.chr3 21250885 0 - 190850796 C e papAnu2.chr5 16408856 0 + 178775436 C e nomLeu3.chr20 20303944 0 - 85365473 C a score=5602.000000 s hg38.chr4_KI270790v1_alt 128059 23 + 220246 tgatgctgctggtttgacagaag s panTro4.chr4 21514572 23 + 193495092 tgatgctgctggtttgacagaag i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21691663 23 + 198332218 tgatgttgctggtttgatagaac i ponAbe2.chr4 C 0 C 0 e mm10.chr5 49235244 3237 + 151834684 I e chlSab2.chr27 19892964 0 - 48547382 C e macFas5.chr5 20818081 965 + 189454096 I e rheMac3.chr5 16769256 0 + 184069350 C e calJac3.chr3 21250885 0 - 190850796 C e canFam3.chr3 3825106 970 - 91889043 I e papAnu2.chr5 16408856 0 + 178775436 C e nomLeu3.chr20 20303944 0 - 85365473 C a score=6245.000000 s hg38.chr4_KI270790v1_alt 128082 67 + 220246 agtggaatgaccttttgaagactcggttacagtgtcagctatgagacagtaccttgcagagctatag s ponAbe2.chr4 21691686 67 + 198332218 agtggaatgaccttttggagactcggttacagtgtcagctatgagacagtaccttgcagagctatag i ponAbe2.chr4 C 0 C 0 e mm10.chr5 49235244 3237 + 151834684 I e chlSab2.chr27 19892964 0 - 48547382 C e macFas5.chr5 20818081 965 + 189454096 I e rheMac3.chr5 16769256 0 + 184069350 C e calJac3.chr3 21250885 0 - 190850796 C e canFam3.chr3 3825106 970 - 91889043 I e papAnu2.chr5 16408856 0 + 178775436 C e nomLeu3.chr20 20303944 0 - 85365473 C e panTro4.chr4 21514595 0 + 193495092 C a score=4011.000000 s hg38.chr4_KI270790v1_alt 128149 2 + 220246 ca s ponAbe2.chr4 21691753 2 + 198332218 ca i ponAbe2.chr4 C 0 I 611 s nomLeu3.chr20 20303944 2 - 85365473 ca i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16769256 2 + 184069350 ca i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20819046 2 + 189454096 ca i macFas5.chr5 I 965 C 0 s papAnu2.chr5 16408856 2 + 178775436 CA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19892964 2 - 48547382 ca i chlSab2.chr27 C 0 C 0 e mm10.chr5 49235244 3237 + 151834684 I e calJac3.chr3 21250885 0 - 190850796 C e canFam3.chr3 3825106 970 - 91889043 I e panTro4.chr4 21514595 0 + 193495092 C a score=31878.000000 s hg38.chr4_KI270790v1_alt 128151 24 + 220246 tgatcatggaattcatgggcctta s nomLeu3.chr20 20303946 24 - 85365473 tgatcatggaattcatgggcctta i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16769258 24 + 184069350 tgatcatggaattcacgggcctta i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20819048 24 + 189454096 tgatcatggaattcacgggcctta i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16408858 24 + 178775436 TGATCATAGAATTCGTGGGCCTTA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19892966 24 - 48547382 tgatcatggaattcatgggcctta i chlSab2.chr27 C 0 C 0 e mm10.chr5 49235244 3237 + 151834684 I e calJac3.chr3 21250885 0 - 190850796 C e canFam3.chr3 3825106 970 - 91889043 I e ponAbe2.chr4 21691755 611 + 198332218 I e panTro4.chr4 21514595 0 + 193495092 C a score=70011.000000 s hg38.chr4_KI270790v1_alt 128175 41 + 220246 tcatatccccaaccatcctgttgctgctggtttgacagaac s nomLeu3.chr20 20303970 41 - 85365473 tcatatccccaaccattctgatgctgctggtttgacagaac i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16769282 41 + 184069350 tcatgtccccaaccatcctgatgctgccagtttgatagaac i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20819072 41 + 189454096 tcatgtccccaaccatcctgatgctgccagtttgacagaac i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16408882 41 + 178775436 TCATATCCCCAACCATCCTGATGCTGCCAGTTTGACAGAAC i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19892990 41 - 48547382 tcatgtccccaaccatcctgatgctgccagtttgacagaac i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21250885 41 - 190850796 ttatgttcccacccatcctgatgcagctggtttgacggaac i calJac3.chr3 C 0 C 0 e mm10.chr5 49235244 3237 + 151834684 I e canFam3.chr3 3825106 970 - 91889043 I e ponAbe2.chr4 21691755 611 + 198332218 I e panTro4.chr4 21514595 0 + 193495092 C a score=973404.000000 s hg38.chr4_KI270790v1_alt 128216 426 + 220246 agtggaatgaccttttgaagactcggttacagtgtcagctatgagacagtaccttgcagagctgtagcaaagttctccaggagtctacatatactttgaatcgatatccaaaatatggtactatttcttccatagctagaattcatgggtccacaattcaagtggtgaaaatggaaatggctctatttactattacaactgatgacccattagcacaattttgcttcctgctcccatgaccttacgctctgcttgttcagaagtcttagttccaaagagaggaatgcttctagcagaagacacaacacaaattccactgatgtggaagttaaaat--tcacctgatgactttgggctcttcatgcctctgaatcaacaagcagggaaggaagttacagtgctggctgggataattgatac-tgactacc s panTro4.chr4 21514595 426 + 193495092 agtggaatgaccttttgaagactcggttacagtgtcagctatgagacagtaccttgcagagctgtagcaaagttctccaggagtctacatatactttgaatcgatatccaaaatatggtactatttcttccatagctagaattcatgggtccacaattcaagtggtgaaaatggaagtggctctatttactattacaactgatgacccattagcacaattttgcttcctgctcccatgaccttatgctctgcttgttcagaagtcttagttccaaagagaggaatgcttctagcagaagacaaaacaccaattccactgatgtggaagttaaaac--tcacctgatgactttgggctcttcatgcctctgaatcaacaagcagagaaggaagttacagtgctggctgggataattgatac-tgactacc i panTro4.chr4 C 0 C 0 s nomLeu3.chr20 20304011 428 - 85365473 agtggaatgacctttagaggactcggatagagtgtcagctatgagacagtaccttgcagagctatagcaaagttctccaggagtctacgtatactttgaatcaatatccaaaatatggtactatttcttccatagccagaattcatgggtccacaattcaagtggtagaaatggaagtggctctatttactattacaactgatgacccattagcacaattttccttcctgttcccgtgaccttatgctctgcttgtttagaagtcttagttccaaagagaggaatgcttctagcaggagacacaacaaaaattctactgatgtggaagttaaaattgtcacctggtgactttgggctcttcatgcctctgaatcaacaggcagagaaggaagttacagtgctggctgggataattgatcc-cgactact i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16769323 428 + 184069350 agtggaatgaccttttgaagactcggttacagtgtcagctatgagacagtaccttgcagagctatagcaaagttctccaggagtctacatatactttgaatcagtatccaaaacatggtactctttcttccatagccagaattcatgggtccacaattcaagtggtggaaacgcaagtagttctacttattattatgactgatgacccattagcacatttttgcttcctgctcccatgaccttatgctctgcttgtttataagtcttagttgcaaagagagggatgcttctagcaggagacacaacaaaaattccactgatgtggaagttaaaactgtcacctggtgactttgggctcttcgtgcctttggatcaacaggaagagaaggaagttacaatgctggctgggataattgatcc-tcactacc i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20819113 428 + 189454096 agtggaatgaccttttgaagactcggttacagtgtcagctatgagacagtaccttgcagagctatagcaaagttctccaggagtctacatatactttgaatcagtatccaaaacatggtactctttcttccatagccagaattcatgggtccacaattcaagtggtggaaacgcaagtagttctacttattattatgactgatgacccattagcacatttttgcttcctgctcccatgaccttatgctctgcttgtttataagtcttagttgcaaagagagggatgcttctagcaggagacacaacaaaaattccactgatgtggaagttaaaactgtcacctggtgactttgggctcttcgtgcctttggatcaacaggaagagaaggaagttacaatgctggctgggataattgatcc-tcactacc i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16408923 428 + 178775436 AGTGGAATGACCTTTTGAAGACTCGGTTACAGTGTCAGCTATGAGACAGTACCTTGCAGAGCTATAGCAAAGTTCTCCAGGAGTCTACATATACTTTGAATCGGTATCCAAAACATGGTACTCTTTCCTCCATAGCCAGAATTCATGGGTCCACAATTCAAGTGGTGGAAACGCAAGTGGTTCTATTTACTATTATGACTGATGACCCATTAGCACATTTTTGCTTCCTGCTCCCATGACCTTATGCTCTGCTTGTTTATAAGTCTTAGTTCCAAAGAGAGGGATGCTTCTAGAAGGAGACACAACAAAAATTCCACTGATGTGGAAGTTAAAACTGTCACCTGGTGACTTTGGGCTCTTCGTGCCTTTGGATcaacaggaagagaaggaagttaCAATGCTGGCTGGGATAATTGATCC-TGACTACC i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19893031 428 - 48547382 agtggaatgaccttttgtagactcggttacagtgtcagctatgagacagtaccttgcagagctatagcaaagttctccaggagtctacatatactttgaatcggtatccaaaacatggtactctttttttcatagccagaattcatgggtccacaattcaagtggtggaaacgcaagtggttctatttactattatgactgatgacccattagcacatttttgcttcctgctcccatgaccttatgctctgcttgtttataagtcttagttccaaagagagggatgcttctagaaggagacacaacaaaaattccactgatgtggaagttaaaactgtcacctggtgactttgggctctttgtgcctttggatcaacaggaagagaaggaagttacaatgctggctgggataattgatcc-tgactacc i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21250926 404 - 190850796 agtggaatggccatttgaagactcagttacaatgtcagttatgaaacagtaccttgtagagctacagccaagttatccaggagtctacatagactttgaatcaatattcaaaatatggtactctttctcccatagccagaattcatgggtccacaattcaagtggtgaatatggaagtggctctacttactattgcaactgatgacctattaccacatatttgcttcc-------------------------tgtttagaagtcttagttccaaaaagaggaatgcttctagcaggagacacaacaaaaattccattgttgcagaagtaaaaactgtcacctggtgactttgggctctttgtgcctctgaatcaacaggcggagaaggaagttacactgctggctggggtaactgatccttgactatc i calJac3.chr3 C 0 C 0 e mm10.chr5 49235244 3237 + 151834684 I e canFam3.chr3 3825106 970 - 91889043 I e ponAbe2.chr4 21691755 611 + 198332218 I a score=3516375.000000 s hg38.chr4_KI270790v1_alt 128642 1269 + 220246 aaagagaaattgacctggtactctacaatggaaataaggaag--aatatgtctgaaatatagaagatccttaaggcatcccttattattgccatgtcctgtgattaaattcaatataaaactataacaactcaatttgggcaggactactaaaggcctagatccctcaaaaataaa--------------ggtaaggt---gacccttaccag--ataaataactgtaacctattgaggtacttgctgatggcaaagagaatatgtaaatggtaatgaaataagagttacagcgatgtaaccagtacagaaatgggaactgtgtcatgtgtattttt-ctttgttattttgttatgaatatgttcaagtgtgtgcatgtgggtatctcaaatatctgttttcttccctctcttttccccttaccatataacatgagatgtattgactttatattatagtacttaagtaatgttaactttacatcatagtagttaagttagaggacattgagaagaataatcatcaaaaagactttcaaggattttgcatcctcttttaggggaagggttagtgcatttttagttgtacacaggatagtagtattaatcatgttaagc-aaaagtattgccttgttattgtctttaattggagattaattttggtttaagatgtatatgagtgccaggtttacaaaaatggactCAtgatggttaattttatatgttaacacggttaaatgatggtatccaaatatttggccaaatattattctagatatttccatgaagctattttttagatgagattaacatttaaatcaatggattttgaggaaagcatattaacctcaattgtgtggatgggcctgattcaacagttgaagaccttagtag-aagaaaactgaccacccttcagcaagaagaaactctgcaaggagactgccttcaaacttgaact------cttccctgggtctccaagctgccagactatcctgcagatttttgacttgttggcctccataattatgtgagccaattgtttgaaataaatctctagactgatagatgatagataggtgatgatgatgat-gatagatagatagatagatagatagat------------------------agatagatagatagatagactggcagaaagatagatagatagatatcctactggttgtgGCCCTAATTAATGTATCCCCAATGCTTTACTCATTAAATTTTAAATAAACTTTTTCTTTTTCATTTTACATATCAGAAAAGAAAAGCCTTCTAAGTTGTGTAAGGAACGGTGTCCTGGT s panTro4.chr4 21515021 1251 + 193495092 aaagagaaattgacctggtactctacaatggaaataaggaag--aatatgtctgaaatatagaagatccttaaggcatcccttattattgccatgtcctgtgattaaactcaacataaaactataacaactcaatttgggcaggactactaaaggcctagatccctcaaaaataaa--------------ggtaaggt---gacctttaccag--ataaataactgtaacctattgaggtacctgctgatggcaaagagaatatgtaaatggtaatgaaataagagttacagtgatgtaaccagtacagaaatgggaactgtgtcatgtgtattttt--tttgttattttgttatgaatatgttcaagtgtgtgcatgtgggtatctcaaatatctgttttcttccctctcttttccccttaccatataacatgagatgtattgactttatattatagtacttaagtaatgttaactttacatcatattagttaagttagaggacattgagaagaataatcatcaaaaagactttcaaggactttgcatcctcttttaggggaagggttagtgcatttttagttgtacacaggatagtagtattaatcatgttaagc-aaaagtattgccttgttattgtctttaattggagattaattttggtttaagatgtatatgagtgccaggtttacaaaaatggactCAtgatggttaattttatttgttaacacggttaaatgatggtatccaaatatttggccaaatattattctagatgtttccatgaagctattttttagatgagattaacatttaaatcaatggattttgaggaaagcatattaacctcaattgtgtggatgggcctgattcaacagttgaagaccttagtag-aaaaaaactgaccacccttcagcaagaagaaactctgcaaggagactgccttcagacttgaactgtaactcttccctgggtctccaagctgccagactatcctgcagatttttgacttgtcagcctccataattatgtgagccaattgtttgaaataaatctctagactgatagatgatagataggtgatgatgat-------------------agatagatagat------------------------acatagatacatagatagactggcagaaagatagatagatagatatcctacttgttgtgaccctAATTAATGTATCCCCAATGCTTTTCTCATTAAATTTTAAATAAACTTTTTCTTTTTCATTTTACATATTCGAAAAG-----CCTTCTAAGTTGTGTAAGGAACGCTGTCCTGGT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21692366 1256 + 198332218 aaagagaaattgacctggtactctacaatgggaataaggaag--aatatgtctgaaatatagaagatccttaaggcatcccttattattgccatgccctgtgattaaattcaatataaaactataacgactcaattcgggcaggactactaatggcctagatccctcaaaaataaa--------------ggtaaaatctggacccttaccag--ataaataactataacctattgaggtacttgctgatggcaaagagaatatgtaaatggtaatgaaataagagttacaccaatgtaaccagtacagaaatgggaactgtgtcatgtgtattttt-cttttttattttgttatgaatatgttcatgtgtgtgcacgtgggtatctcaaatatctgctttcttccctctcttttccccttaccatataacatgagatgtattgactttatattatagtacttaagtaatgtcaactttacatcatagtagttaagttagaggacattgagaagaataatcatcaaaaagactttcaaggactttgcatcctcttttaggggaagggttagtgcatttttagttgtacacaggatagtagtattaaccatgttaagc-aaaagtattgccttgttattgtctttaactggagattaattttggtttaagatgtatatgagctccaagtttacaaaaatggactCAtgatggttaattttatgtgttaacatg--taaatgacggtatacaaatatttggccaaatattattctagatgtttccatgaagctattttttagatgagattaacatttaaatcaatggactttgaggaaagcatattaacctcaattgtgtggatgggcctgattcaacagttgaagaccttagtag-aa-aaaactgaccacccttcagcaagaagaaactctgcaaggagactgccttcagacttgagctgtaactcttccctgggtctccaggctgccagactatcctgcagattttggacttgtcagcctccataattatgtgagccaattgtttgaaataaatctctAGACTgatagatgatagacaggtgatgatgat---------------agatagatagatagat------------------------agatagatagatagatagataggcagaaagatagatagatagataTCCTACTGGTTGTGACCCTAATAAATGTATCCCCAATGCTTTACTCATTAAATTTTAAATAAACTTTTTCTTTTTCATTTTACATATTAGAAAAG-----ACTTCTAAGTTGTGTAAGGAACTCTGTCCTGGT i ponAbe2.chr4 I 611 C 0 s nomLeu3.chr20 20304439 1208 - 85365473 aaagagaaattgacctggtactctacaatggaaataaggaag--aatatgtctgatatatagaagatccttaaggcatcccttattattgccatgccctgtgattaaattcaatgtaaaactgtaacgactcaattcgggcaggactactaatggcctagatccctcaaaaataaa--------------ggtaaggt---gacccttaccag--ataaataactataacctattgaggtacttgctgatggcaaagagaatatgtaaatggtaatgaaataagagttacagcgatgtaaccagtacagaaatgggaactgtgtcatgtgtatt-----ttttttattttgttatgaataagttcatgtgtgtgcatgtgggtatctcaaatatctgttttcttccctctcttttccccttatcatataacatgagatgtattgactttatattatagtatttaagtaatgttaactttacatcatagtagttaagttagaggaaattgagaagaataataatcaaaaagactttcgaggactttgcatcctcttttaggggaagggtaagtgcatttttagttgtacaaaggatagtagtattaatcatgttaagcaaaaagtattgccttgttattgtctttaattggagattaattttggtttaagatgtatatgagtgccaagtttacaaaaatggactCAtgatggttaattttatgtgttaacatggttaaatgatggtatccaaatatttggccaaatattattctagatgtttccatgaaggta-tttttatatgagattaacatttaaatcaatggactctaaggaaagcaaattaacctcaattgtgtggatgggcctgattcaacagttgaagaccttagtag-aa-aaaattgaccacccttcagcaagaagaaactc--caagaagactgccttcagactggaactgtaactcttccctgggtctccaggctgccagactatcctgcagattttggacttgtcagcctccataattatgtgagccaattgtttgaaataaatctctAGACTgatagatgatagac--------------------------------------------------------------------------------agatagataggcagaaagacagatagatagataTCCTACTGGTTGTGACCCTAATAAATGTATCCCCAATGCTTTACTCATTAAATTTTAAATAAACTTTTTCTTTTTCATTTTACATATTAGAAAAT-----ACTTCTATGTTATGTAAGGAACTTTGTCCTGGT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16769751 1197 + 184069350 aaacagaaattgacctg------------------------g--aatatgtctgaaatatagaagatccttaaggcatcccttattattgccatgccctgtgattgaattcagtataatactataacaactcaatttgggcagggctactaatggcctagatccctcaaaaataaa--------------ggtaaggt---gacccttaccag--aaaaataactataacccattgaggtgcttgctgatggcaaagagaatatgtaaatggtaatgaaataagagttatagcaatgtaaccagtatagaaatgggaactgtgtcatgtgtattttt-cttttttattttgt--tgaatatgtttgtgtgtgtgtatgtgggtatctcaaatatctgccttcttccctctgttttccctttatcatataacatgagatgtattgactttatattatagtacttaagtaatgttaattttatatcatagtagttaagttagaggacattgagaagaataatcatcaaaaagactttcaaggactttgcatcctcttttaatggaggggttaatgcatttttagttgtacacaggatagtagtattaaccatgttaagc-aaaagtattgccttgttattgtctttaattggtgattaattttggtttaaaatgtatatgtgtgccaagtttacaaAAATTGACTCACgatggttaattttatgtgttaacatggttaaatgatagtattcaaatatttggccaagtattattctagatgtttccatgaagcta-tttttatatgagattaacatttaaatcaatggactttgaggaaagcatattaacctcaattgtgtggatgggcctgattcaacagttgaagaccttagtag-aa-aaaactgaccacccttcagcaagaagaaa--ctgcaaggagactgccttcagacttgaactgtaactcttccttgagtctccgggctgccagactaccctgcagattttggacttgtcagcctccataattatgtgagccaattgtttgaaataaatctatagattgatagatgatggatagat------------------------agatagataggcagaa--------------------------------------------agatagatagatagatagatagataTCCTACTGGTTGTGACCCTAATACATGTATCCCCaatattttacttattaaattttaaataaaCTTTTTCTTTTTCATTTTACATATTAGAAAAG-----ACTTCTAAGCTGTGTAAGGAACTCTGTCCTGGT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20819541 1217 + 189454096 aaacagaaattgacctggtactctacaatggaaataaggaag--aatatgtctgaaatatagaagatccttaaggcatcccttattattgccatgccctgtgattgaattcagtataatactataacaactcaatttgggcagggctactaatggcctagatccctcaaaaataaa--------------ggtaaggt---gacccttaccag--aaaaataactataacccattgaggtgcttgctgatggcaaagagaatatgtaaatggtaatgaaataagagttatagcaatgtaaccagtatagaaatgggaactgtgtcatgtgtattttt-cttttttattttgt--tgaatatgtttgtgtgtgtgtatgtgggtatctcaaatatctgccttcttccctctgttttccctttatcatataacatgagatgtattgactttatattatagtacttaagtaatgttaattttatatcatagtagttaagttagaggacattgagaagaataatcatcaaaaagactttcaaggactttgcatcctcttttaagggaggggttaatgcatttttaattgtacacaggatagtagtattaaccatgttaagc-aaaagtattgctttgttattgtctttaattggtgattaattttggtttaaaatgtatatgtgtgccaagtttacaaAAATTGACTCACgatggttaattttatgtgttaacatggttaaatgatagtattcaaatatttggccaagtattattctagatgtttccatgaagcta-tttttatatgagattaacatttaaatcaatggactttgaggaaagcatattaacctcaattgtgtggatgggcctgattcaacagttgaagaccttagtag-aa-aaaactgaccacccttcagcaagaagaaa--ctgcaaggagactgccttcagacttgaactgtaactcttccttgggtctccgggctgccagactaccctgcagattttggacttgtcagcctccataattatgtgagccaattgtttgaaataaatctatagattgatagatgatggatagat------------------------agatagataggcagaa------------------------------------------------agatagatagatagatagataTCCTACTGGTTGTGACCCTAATACATGTATCCCCAATattttacttattaaattttaaataaactttttctttttcattttacatattaGAAAAG-----ACTTCTAAGCTGTGTAAGGAACTCTGTCCTGGT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16409351 1268 + 178775436 AAAGAGAAATTGACCTGGTactctaaaatggaaataaggaaG--AATATGTCTGAAATATAGAAGATCCTTAAGGCATCCCTTATTATTGCCATGCCCTGTGATTGAATTCAGTATAATACTATAACAACTCAATTCGGGCAGGACTACTAATGGCCTAGATCCCTCAAAAATAAA--------------GGTAAGGT---GACCCTTACCAGATAATATTAACTATAACCTATTGAGGTGCTTGCTGATGGCAAAGAGAATATGTAAATGGTAATGAAATAAGAGTTATAGCAATGTAACCAGTATAGAAATGGGAACTGTGtcatgtgtattttt-cttttttattttgt--tgaataagttcatgtgtgtgtatgtgggtatcTCAAATATCTGTCTTCTTCCCTCTGTTTTCCCTTTATCATATAATATGAGATGTATTGACTTTATATTATAGTACTTAAgtaatgttaattttatatcacAGTAGTTAAGTTAGAGGACATTGAGAAGAATAATCATCAAAAAGACTTTCAAGGACTTTGCATCCTCTTTTAGGGAAGGGGTTAGTGCATTTTTAGTTGTACACAGGATAGTAGTATTAACCATGTTAAGC-AAAAGAATTGccttgttattgtctttaatTGGTGATTAATTTtggtttaaaatgtatatgtgtgccaagtttacaaaaattgactcatggtggttaattttatgtgttaacatGGTTAAATGATGGTATTCAAATATTTGGCCAAGTATTATTCTAGATGTTTCCATGAAGCTA-TTTTTatatgagattaacatttaaatcaatgGACTTTGAGGAAAGCATATTAACCTCAATTGTGTGGATGGGCCTAATTCAACAGTTGAAGACTTTAGTAGaaa-aaaaCTGACCAATCTTCAGCAAGAAGAAA--CTGCAAGGAGActgccttcagacttgaactgtAACTCTTCCTTGGGTCTCTGGGCTGCCAGactaccctgcagattttggacttgtcagcctccataattatgtgagccaattgtttgaaataaatctatagattgatagatgatggatagat------------------------agatagataggcagaaagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatatcctACTGGTTGTGACCCTACTACATGTATACCCAATGttttacttattaaattttaaataaactttttctttttcattttacgtATTAGAAAAG-----ACTTCTAAGCTGTGTAAGGAATTCTGtcctggt i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19893459 1249 - 48547382 aaagagaaattgacctggtactctaaaatggaaataaggaag--aatatgtctgaaatatagaagatccttaaggcatcccttattattgccatgccctgtgattgaattcagtataatactacaacaactcaattcaggcaggactactaatggcctagatccctcaaaaataaa--------------ggtaaggt---gacccttaccagataatattaactataacctattgaggtgcttgctgatggcaaagagaatatgtaaatggtaatgaaataagagttatagcaatgtaaccagtatagaaatgggaactgtgtcatgtgtattttt-cttttttattttgt--tgaatatgttcgtgtgtgtgtatgtgggtatctcaaatatctgtcttcttccctctgttttgcctttatcatataacatgagatgtattgactttatattatagtacttaagtaatgttaattttatatcatagtagttaagttagaggacattgagaagaataatcatcaaaaagactttcaaggactttgcatcctcttttaggggaggggttattgcatttttagttgtacacaggatagtagtattaaccatgttaagc-aaaagtattgccttgttattgtctttaattggtgattaattttggtttaaaatgtatatgtgtgccaagtttacaaAAATTGACTCAtgatggttaattttatgtgttaacatggttaaatgatggtattcaaatatttggccaagtattattctagatgtttccatgaagcta-tttttatatgagattaacatttgaatcaatggactttgaagaaagcatattaacttcaattgtgtggatgggcctgattcaacagttgaagaccttagtag-aa-aaaactgaccacccttcagcaagaagaaactctgcaaggagactgctttcagacttgaactgtaactctctcttgggtctccgggctgccagactaccctgcagattttggacttgtcagcctccataattatgtgagccaattgtttgaaataaatctatagattgatagatgatagatagat------------------------aggtagatagatagat--------------------aggcagagagatagatagatagatagatagatagatagatagatagataTCCTACTGGTTGTGACCCTAATACATGTATACCCGATGttttacttattaaattttaaataaactttttctttttcattttacatattacaAAAG-----ACTTCTAAGCTGTGTAAGGAACTCTGTCCTGGT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21251330 1298 - 190850796 aagaagaaatcgacctggtactctacaatggaaacaacaaagatattatgtctgaaatacagaagatccttaaggcatcccttattattgccatgccctgtgattaaattcaatataaaactgtaacaactccattcaggcaggactactaattgtctagatccctcaaaagcaaagacttttgttatctggtatggg---tcaccttaccag--ataaatagctataacctattgaggtacttgctgaaggcaaagagaatatgtaaatggtaaggaaatatgagtttcagtgatgtaaccagtacag-aatgggaactgtgtcatgtatattttttcttttttattttgttatgagtatgtttgtgtgtgtgcatgtgggtatctcaaatatctgttttcttccctctcttttccctttatcctataacatgagatgttttgactttatattatagttcttaagtaatgttagctttacatcatagtagttaagttagaggatattgaaaagaacaatcatcacaaagactttcaaggactttgcatccctttt--ggggaaaggttagtgcatattttgttgtatacaagatagtggtattaatcatgttaagt-aaaagtattgccttgtttttgtctttaattggagattaattttggtttaacatgtacataagtgccaagtttacaaaaatggactCgtgatgggtaaccttatgtgttagcatggttaaatgatggtatctagatatttggcgaagtattattctagatgtttctgtgaaggta-tttttat-tgagattaacatttaagtcaacagactttgaggaaagcatattaaccttgtttgtgtggatgggcctgattcaacagttgaagtccttagtag-aa-aacacagacctctcttcagctagaagaaactctgcaaggagactgccttcagacttgaactgcaactcttccctgggtccccaggctgccagcctatcccgaagatttaggactagtcagcctccataattacatgagccaattgtttgcaatagatctctTGATTGATAGATgagagagagagagagagagagagagagagagagagagagagagagagagag--------agagagagggagagaaagagagagagaTACAAAGATAGGCAGAAAGACAGACAGATAGATATCCTATTGGTTCTGACCCTAATACATGTATCCCCAATGCTTTACTCATTAAATTTCAAATAAACTTTTTCTTTTTCATTTTACATATTAGAAAAG-----ACATCTAAGCTGTATACGGAACTCTGTCCTGGT i calJac3.chr3 C 0 C 0 e mm10.chr5 49235244 3237 + 151834684 I e canFam3.chr3 3825106 970 - 91889043 I a score=1387053.000000 s hg38.chr4_KI270790v1_alt 129911 418 + 220246 TTTAAAA---AAAAAATC--AAACAAAACCTTGGAAGAGTAATTTGACATTGTAATCCTTTCATTTCACAGCAACTCCATGAACTCAA-------GATTGCAATGTAGTTACCATCTACAGAGATCCAGAGTCAGTTTGGATTCTACAATTGTAAATACACAAGCAGAATGAACTTCCACCTGAGAAATCACAAATCAAATCTAATATTACTTTTGGAGGAAAAGGGTTGGAGAAATTCCAATAAGGTAAGCTTACAGAACTCATGTCCAACCCAAGC----TATAGAAGAGCCTTATGGAATAAA--CCGAAAGAACTAGATTG------------------------------------------------------------ATGGGAGGCACAGCCTTGTTCTGTGGGAAGTGATGCATATCTTGAGGGGCA----------------TAGATCCAAATTGTAGACAAATTATATAATCTTGGCAATAAGACTT-CCATTTCCAATCCT s panTro4.chr4 21516272 416 + 193495092 TTTAAAA---AAAA--TC--AAACAAAACCTTGGAAGAGTAATTTGACATTGCAATCCTTTCATTTCACAGCAACTCCATGAAATCAA-------GATTGCAATGTAGTTACCATCTACAGAGATCCAGAGTCAGTTTGGATTCTATAATTGTAAATACACAAGCAGAATGAACTTCCACCTGAGAAATCACAAATCAAATCTAATATTACTTTTGGAGGAAAAGGGTTGGAGAAATTCCAATAAGGTAAGCTTGCAGAACTCATGTCCAACCCAAGC----TATAGAAGAGCGTTATGGAATAAA--CCGAAAGAACTAGATTG------------------------------------------------------------ATGGGAGGCACAGCCTTGTTCTGTGGGAAGTGATGCATACCTTGAGGGGCA----------------TAGATCCAAATTGTAGATAAATTATATAATCTTGGCAATAAGACTT-CCATTTCCAATCCT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21693622 417 + 198332218 TTTAAAA---AAAA--TC--AAACAAAACCTTGGAAGAGTAATTTGACATTGTAATCCTTTCATTTCACAGCATCTCCATGAACTCAA-------GATTGCAATGTAGTTACCATCTACAGAGATCCAGAGTCAGTTTGGATTCTACAATTGTAAATACACAGGCAGAATGAACTTCCACCTGAGAAATCACAAGTCAAATCTAATATTACTTTTGGAGGAAAAGGGTTGGAGAAATTCCAATAAGGTAAGCTTACAGAACTCATGTCCAACCCAAGC----TATAGAAGAGCATTATGGAATAAA--CTGAAATAACTAGATTG------------------------------------------------------------ATGGGAGGCACAGCCTTGTTCTGTGGGAAGTGATGCATACCTTGAGGGGCA----------------TAGATCCACATTGTAGATACATTATATAATCTTGGCAATAAGACTTCCCATTTCCAACCCT i ponAbe2.chr4 C 0 I 5 s nomLeu3.chr20 20305647 418 - 85365473 TTTAAAA---AAAA-ATC--AAACAAAATCTTGGAAGAGTAATTTGACATTGTAATCCTTTCATTTCACAGCATCTCCATGAACTCAA-------GATTGCAATGCAGTTACCATCTATAGAGATCCAGAGTCAGTTTGGATTCTACAATTGTAAATACACAGGCAGAATGAACTTCCACCTGAGAAATCACAAATCAAATCTAATATTACTTTTGGAGGCAAAGGGTTGGAGAAATTCCAGTAAGGTAAGCTTACAGAACTCATGTCCAACCCAAGC----TATAGAAGAGCATTATGGAATAAA--CTGAAATAACTAGATTG------------------------------------------------------------ATGGGAGGCACAGCCTTGTTCTGTGGGAAATGATGCATACCTTGAGGGGTA----------------TAGATCCAAACTGTAGATAAATtatataatcttggcaataagacttcccatttccaatcct i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16770948 421 + 184069350 TTTAAAA---AAAA--TC--AAACAAAATCTTGGAAGAGTAATTTGACATTGTACTCCTTTCATTTCACAGCATCTCCATGAACTCAA-------GATTGCAATGTAGTTACCATCTACAGAGATCCAGAGTCAGTTTGGAGTCTATAATTGTAAACACACAGGCAGAATGAACTTCCACCTGAGAAATCACAAATCAAATCTAATGTTACTTTTGGAGGAAAAGCGTTGGAGAAATTCCAATAAGGTAAGCTTACAGAACTCATGTCCAACCCAAGCTATATATAAAAGAGCATTACTGAATAAA--CTGAAAGAACTAGATTG------------------------------------------------------------ATGGGAGGCACAGCCTTGTTCTGTGGGAAGTGATGCATACCTGGAGGGGTG----------------CAGATTCAAATTGTAGATAAATtatataatcttggcaataagtcttcccatttccaatcct i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20820758 421 + 189454096 TTTAAAA---AAAA--TC--AAACAAAATCTTGGAAGAGTAATTTGACATTGTACTCCTTTCATTTCACAGCATCTCCACGAACTCAA-------GATTGCAATGTAGTTACCATCTACAGAGATCCAGAGTCAGTTTGGAGTCTATAATTGTAAACACACAGGCAGAATGAACTTCCACCTGAGAAATCACAAATCAAATCTAATGTTACTTTTGGAGGAAAAGCGTTGGAGAAATTCCAATAAGGTAAGCTTACAGAACTCATGTCCAACCCAAGCTATATATAAAAGAGCATTACTGAATAAA--CTGAAAGAACTAGATTG------------------------------------------------------------ATGGGAGGCACAGCCTTGTTCTGTGGGAAGTGATGCATACCTGGAGGGGTG----------------CAGATTCAAATTGTAGATAAATTATATAATCTTGGCAATAAGACTTCCCATTTCCAATCCT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16410619 480 + 178775436 ttt-aaa---aaaa--tc--aaacaaaatccTGGAAGAGTAATTTGACATTGTAAACCTTTCATTTCACAGCATCTCCATGAACTCAA-------GATTGCAATGTAGTTACCATCTACAGAGATCCAGAGTCAGTTTGGAGTCTCTAATTGTAAACACACAGGCAGAATGAACTTCCACCTGAGAAATCACAAATCAAATCTAATATTACTTTTGGAGGAAAAGCGTTGGAGAAATTCCAATAAGGTAAGCTTACAGAACTCATGTCCAACCCAAGCTATATATAGAAGAGCATTACGGAATAAA--CCGAAAGAACTAGACTGATGGGAGGCaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaTGGGAGGCACAGCTTTGTTCTGTGGGAAGTGATGCATACCTGGAAGGGTG----------------CAGATCCAAATTGTAGATAAATTATATAATCTTGGCAATAAGACTTCCCATTTCCAatcct i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19894708 422 - 48547382 TTT-AAA---AAAA--TCAAAAAAAAAATCTTGGAAGAGTCATTTGACATTGTAATCCTTTCATTTCACAGCATCTCCATGAACTCAA-------GATTGCAAGGTAGTTACCATCTACAGAGATCCAGAGGCAGTTTGGAGTCTATAATTGTAAACACACAGGCAGAATGAACTTCCACCTGAGAAATCACAAATCAGATCTAATATTACTTTTGGAGGAAAAGCGTTGGAGAAATTCCAATAAGGTAAGCTTACAGAACTCATGTCCAACCCAAGCTATATATAGAAGAGCATTACGGAAGAAA--CTGAAAGAACTAGATTG------------------------------------------------------------ATGGGAGGCACAGCCTTGTTCTGTGGGAAGTGATGCATACCTGGAGGGGTA----------------CAGATCCAAATTGTAGATAAATTATATAATCTTGGCAATAAGACTTCCCATTTCCAATCCT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21252628 417 - 190850796 TTTAAAA---AAAA--TC--AAACAAAATCTTGGAAGAATAATTTGACATTGTAATCCTTTCACTTCACAGCATCTCCATGAGCTCAA-------GTTTGCAATGTAGTTACCATCTACAGAGATCCAGAGTCAGTTTGGATTCTACAATTGTAAATACAGAGGCAGAATGAACTTCCACCTTGTAAATTACAAATCAAACCTAATATTACTTTTGGGGGAAAAGGGTCGGATAAATTCCAATAAGGTAAGCTTATGGAACTCAGGCCCAACCCAAGC----TGTAGAAGAGCATTATGGAATAAA--CTGAAAGAACTAGATTG------------------------------------------------------------ATGGGAGGCCCAGCCTTCTTCCACAAGAAGTGACACATACCTGGAAAGATA----------------TAGAAGCAAATTGTAGATAAATTGTATAATCTTGACAACAAAACTTCTCATTTCCAATCCT i calJac3.chr3 C 0 C 0 s canFam3.chr3 3826076 443 - 91889043 -ttaaaaaaTAAAA--TC--ACATAAAATCTTGGAAGTATTATTAAATGCTGCAATCTTTCCATTTC-CAGCATCTCCATGAACGGAATGGGAACATATGCAATGCAATTACTACCTACAGAGATCCAAGGGCACTTTAGATTCCAGAACAGCAAATATATAAGCAGAATAAACTTCCACCTGATAAATAGTAAGTCAAATCTAATATTACTTCTAGAGAGAACGGGTTGGAG-AGTTCTAATGGGACAAATGTATAGAATTCTTGTCCAACCCATGC----TATATCAAAGTGCTATGAACTAAATGCTGAAAGACCTAGATTGAG----------------------------------------------------------AGAGgaggcacagcttggtttagtaagcagggaagcatactgggaggaatgaggcctggatgtaagcccggtctgaattgcagata-attttatgaccttgacaataagacttcccatttctgaactc i canFam3.chr3 I 970 C 0 e mm10.chr5 49235244 3237 + 151834684 I a score=36548.000000 s hg38.chr4_KI270790v1_alt 130329 12 + 220246 TGATTTTCACAT s panTro4.chr4 21516688 12 + 193495092 TGATTTTCTCAT i panTro4.chr4 C 0 C 0 s nomLeu3.chr20 20306065 12 - 85365473 tgattttctcat i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16771369 12 + 184069350 tgattttctcat i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20821179 12 + 189454096 TGATTTTCTCAT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16411099 12 + 178775436 tgattttctcat i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19895130 12 - 48547382 TGATTTTCTCAT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21253045 12 - 190850796 TGACTTTTTCAT i calJac3.chr3 C 0 C 0 s canFam3.chr3 3826519 12 - 91889043 tgattttctcat i canFam3.chr3 C 0 C 0 e mm10.chr5 49235244 3237 + 151834684 I e ponAbe2.chr4 21694039 5 + 198332218 I a score=2974375.000000 s hg38.chr4_KI270790v1_alt 130341 962 + 220246 CTGAAACCTAATGAAA--GTGCAGCAGGTAAAAGCAGCAGATGAGGAAGGGGTAAGTCCATATTCGAAGCTACCCTGATCCCCTTACTGTTTCTGTGGTATTATTATTTTAGTCAACGCCTGGGTTTACTCTGGGCATCTCAGAGTCCGCTGGAATTCTGGGTGGATCCCATAAATTCTCCAATAGTTGTCTCAGTACATTTAGTAATTTATTTATACCTTAGGTTTTG-----TTTTGGTTTTGTTTC-----ATTTCATTTTGGCCCTTAAAATGGGATACTGCTTGTAGTTTGTAGAAGGCTTTGTTAATTTATTTTGATTTTTGATCTCTCTATGATTTATCATATGTCTTCAAGGCATATTAAGATTCTAGGA------------------AAGAAAACTGGTGTAGTGAATTCATTTTTCTAAGAATCATAATTTGTTATTGTTTGCAAATAAATATCTGAGACTGTGGAATCCAAGAGTATCTGAGCTTA-----AAGGTACCCTAGGGTACCAGAGATAACTCTTATTGAACATTACTATTTGCCAGATGTTGTATTAATATTACCTTCTTTATTCACAGAAATAATCATTAGAATAGCAATAATTACCAATTATTAAGTACTTGAG-TGTGTGC---ATAAGCACTCA--TGATTTTTACTTAAAATAAAATTCATTCCAGTATAGC--TGGAATgtgttg-------caaacatattaattcattcaatcctgaagacaaccatatga-gttgtaccattatttctcctatgttatagatgcgtaaaatgatacagacaggttaaataaattgcccatatcatacat-ttagtaagcaatagaaccgaaattcaaagcagagactagctcccaggtctgtgtttttaactactgtattaAGCGGTTAATGGAGTTTCCTTAATAAATATACATTGTTATTATTCTCATTTAAGAGATAAACA--TCTGAAAGTCAAATT---------AGCTAAATACCTT-------GCAAAAGTCACTGT------------------------------------------------------------- s panTro4.chr4 21516700 961 + 193495092 CTGAAACCTAACGAAG--GTGCAGCAGGTAAAAGCAGCAGATGAGGAAGGGGTAAGTCCATATTCAAAGCTACCCTGATCCCTTTACTGTTTCTGTGGTATTATTATTTTAGTCAAGGCCTGGGTTTACTCTGGGCATCTCAGAGTCCGCTGGAATTCTGGGTGGATCCCATAAATTCTCCAATAGTTGTCTCAGTACATTTAGTAATTTATTTATACCTTAGgttttg-----ttttggttttgtttt-----atttcattttgGCCTTTAAAATGAGATACTGCTTGTAGTTTGTAGAAGGCTTTGTTAATTTATTTTGATTTTTGATCTCTCTATGATTTATCATATGTCTTTAAGGCATATTAAGATTCCAGGA------------------AAGAAAACTGGTGTAGCGAATTCATTTT-CTAAGAATCATAATTTGTTATTGTTTGCAAATAAATATCTGAGACTGTGGAATCCAAGAGTATCTGAGCTTA-----AAGGTACCCTAGGGTACCAGAGATAACTCTTATTGAACATCACTATTTGCCAGATGTTGTATTAATATTATCTTCTTTATTCACAGAAATAATCATTAGAATAGCAATAATTATCAATTATTAAGTACTTGAG-TGTGTGC---ATAAGCACTCA--TGATTTTTACTTATAATAAAATTCATTCCAGTATAGC--TGGAATGTGTTG-------CAAAAAtattaattcattcaatcctgaagacaaccatatga-gttgtaccattatttctcgtatgttatagatgggtaaaatgatacagaaaggttaaataaattgcccatgtcatacat-ttagcaagcaatagaactgaaattcaaagcagagactagctcccaggtctgtgtttttaactactgtattaAGCGGTTAATAGAGTTTCCTTAATAAATATACATTGTTATTATTCTCATTTAAGAGATAAACA--TCTGAAAGTCAAATT---------AGCTAAATACCTT-------GCAAAAATCACAGT------------------------------------------------------------- i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21694044 962 + 198332218 CTGAAACCTAATGAAG--GTGCAGCAGGTAAAAGCAGCAGATGAGGAAGGGGTAAGTCCACATTCGAAGCTACCCTGATCCGCTTACTGTTTCTGTGGTATTATTATTTTAGTCAAGGCCTAGGTTTACTCTGGGCATCTCAGAGTCCGCTGGAATTCTGGGTGGATCCCATAAATTCTCCAATAGTTGTCTCAGTACATTTAGTAATTTATTTATACCTTAGGTTTTG-----TTTTGGTTTTGTTTT-----ATTTCATTCTGGCCTTTAAAATGGGATACTGCTTGTAGCTTGTAGAAGGCTTTGTTAATTTATTTTGATTTTTGATCTCTCTATGATTTATCATATGTCTTTAAGGCATATTAAGATTCTAGGA------------------AAGAAAACTGGTGTAGCGAATTCATTTTTCTAAGAATCATAATTTGTTATTGTTTGCAAATAAATATCTGAGACTGTGGAATCCAAGAGTATCTGAGCTTA-----AAGGTACCCTAGGGTACCagagataactcttattgagcattactatttgccagacgttgtattaaTATTATCTTCTTTATTCACAGAAATAATCATTAGAATAATAATAATTATCAATTATTAAGTACTTGAG-TGTGTGC---ATAAGCACTCA--TGATTTTTACTTATAATAAAATTCATTCCAGTATAGC--TGGAATGTGTTG-------CAAAAAtattaattcattcaatcctgaagacaaccatatga-gttgtaccattatttctcctatgttatagatgtgtaaaatgatacagaaaggttaaataaattgtccatgtcatacat-ttagtaagcaatagaactgaaattaaaagcagagactagctcccaggtctgtgtttttaactactgtattaAGCGGTTAATAGAGTTTCCTTAATAAATATACATtgttattattctcatttaagagatgaaca--tctgaaagtcatatt---------agctaaatacctt-------gcaaaagtcacaGT------------------------------------------------------------- i ponAbe2.chr4 I 5 C 0 s nomLeu3.chr20 20306077 940 - 85365473 ctgaaacctaatgaag--gTGCAGCAGGTAAAAGCAGCAGATGAGGAAGGGGTAAGTCCACATTCGAAGCTACCCTGATCCCCTTACTGTTTCTGTGGTATTATTATTTTAGTCAAGGCCTAGGTTTACTCTGGGCATCTCAGAGTCTGCTGCAATTCTGGGTGGATCCCATAAATTCTCCAATAGTTGTCTCAGTACATTTAGTAATTTATTTATACCTTAGGTTTTG-----TTTT----------------ATTTCATTTTGGCCTTTAAAATGGGATACTACTTGTAGTTTGTAGAAGGCTTTGTTAATTTATTTTGATTTTCGATCTCTCTATGATTTATCATGTGTCTTTAAGGCATATTAAGATTCTAGGA------------------AAGAAAACTGGTGTAGCGAATTCATTTTTCTAAGAATCATAATTTGTTATTGTTTGCAAATAAATATCTGAGACTGTGGAATCCGAGAGTATCTGAGCTTA-----AAGGTACCCTAGGTTACCAGAAGTAACTCTTATTGAACATTACTATTTGCCAGATGTTGTATTAATATTGTCTTCTTTATTCACAGAAATAATCGTTAGAATAGTAATAATTATCAATTATTAAGTAC-TGAG-TGCGTA-------------CA--TGATTTTTACTTATAATAAAAATCATTCCAGTATATC--TGGAATgtgttg-------taaaaatattaattcattcaatcctgaagacaaccatgtga-gttgtaccattatttctcctatgttatagatgggtaaaataatatagaaaggttaaatgaattgcccatgtcatacat-ttagtaagcaatagaaatgaaattcaaagcagagactagctcccaggtctgtgtttttaactactgtattaAGCGGTTAATAGAGTTTCCTTAATAAATATACATTGGTATTATTCTCATTTAAGAGATAAACA--TCTGAAAGTCAAATT---------AGCTAAATACCTT-------GCAAAAGTCACAGT------------------------------------------------------------- i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16771381 947 + 184069350 ctgaaacctaatgaag--gTGCAGCAGGTAAAAGCAGCAGATGAGGAAAGGGTAAGTCCACATTCGGAGCTACCCTGATTCCCTTACTGTTTCTGTGGTATTATTATTTTAGTCAAGGCATAGGTTTACTCTGGGTATCTCAGAGTCTGCTGGAATCCTGGCTGGATCCCATAAATTCTCCAGTAGTTGTCTCAGTACATTTAGTAATTTATTTACACCTTAGgttttg-----tttttgttttgttttgtttcgtttcgttttgGCCTTTAAAATGGTATACTGATGGTAGTTTGGAGAAGGCTTTGTTAATTTATTTTGATTTTAGATCTCTCTATGATTTATCATATTTCTTTAAAGCATCTTAAGATTCTAGGA------------------GTGAAAACTGGTATAGCAAATTCATTTTGCTAAGAATCATAATTTGTTATTGTTTGCAAATAAATATCTGAGACTGTGGAATCTGAAAGTATCTGAGCTTA-----AAGGTACCCAAGGGTACCAGAGATAACTCTTATTGAACACTACTATTTGCTAGATGTTATATTAATATTATCTTCTTTATTCACAGAAATAATCATTAGAATagtaataattatcaattattaagtacttgag-tgtatgc---ataagcactca--tgatttttact----ata----------------agc--tggaatgtgctg-------caaaaatattaattcatttaatcctgaagacaaccatatga-gttgtaccattatttctcctatgttatagatgagtaaaatgagatagaaaggttaaataaattgcccatgtcatacat-ttagtaagcaatagaactgaaattcaaagcagagactagctcccaggtctatgtttttaactactgtattaAGTGGTTAATAGAATTCCCTTAATAAACATACATTGTTGTTATTATCATTTAAGAGACAAACA--TCTGAAAGTCAAATT---------AGCTAAATACCTG-------GCAAAAGTCATAAT------------------------------------------------------------- i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20821191 947 + 189454096 CTGAAACCTAATGAAG--GTGCAGCAGGTAAAAGCAGCAGATGAGGAAAGGGTAAGTCCACATTCGGAGCTACCCTGATTCCCTTACTGTTTCTGTGGTATTATTATTTTAGTCAAGGCATAGGTTTACTCTGGGTATCTCAGAGTCTGCTGGAATCCTGGCTGGATCCCATAAATTCTCCAGTAGTTGTCTCAGTACATTTAGTAATTTATTTACACCTTAGgttttg-----tttttgttttgttttgtttcgtttcgttttgGCCTTTAAAATGGTATACTGATGGTAGTTTGGAGAAGGCTTTGTTAATTTATTTTGATTTTAGATCTCTCTATGATTTATCATATTTCTTTAAAGCATCTTAAGATTCTAGGA------------------GTGAAAACTGGTATAGCAAATTCATTTTGCTAAGAATCATAATTTGTTATTGTTTGCAAATAAATATCTGAGACTGTGGAATCTGAGAGTATCTGAGCTTA-----AAGGTACCCAAGGGTACCAGAGATAACTCTTATTGAACACTACTATTTGCTAGATGTTATATTAATATTATCTTCTTTATTCACAGAAATAATCATTAGAATagtaataattatcaattattaagtacttgag-tgtatgc---ataagcactca--tgatttttact----ata----------------agc--tggaatgtgctg-------caaaaatattaattcatttaatcctgaagacaaccatatga-gttgtaccattatttctcctatgttatagatgagtaaaatgagatagaaaggttaaataaattgcccatgtcatacat-ttagtaagcaatagaactgaaattcaaagcagagactagctcccaggtctatgtttttaactactgtattaAGTGGTTAATAGAATTTCCTTAATAAACATACATTGTTGTTATTCTCATTTAAGAGACAAACA--TCTGAAAGTCAAATT---------AGCTAAATACCTG-------GCAAAAGTCATAAT------------------------------------------------------------- i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16411111 947 + 178775436 ctgaaacctAATGAAG--GTGCAGCAGGTCAAAGCAGCAGATGAGGAAAGGGTAAGTCCACATTCGGAGCTACCCTGATTCCCTTACTGTTTCTgtggtattattattttagtcAAGGCATAGGTTTACTCTTGGTATCTCAGAGTCTGCTGGAATCCTGGGTGGATCCCATAAATTCTCCAGTAGTTGTCTCAGTacatttagtaatttatttacaccttaggttttg-----tttttgttttgttttgtttcgtttcgttttgGCCTTTAAAATGGTATACTGATGGTAGTTTGGAGAAggctttgttaatttattttgattttagatCTCTCTATGATTTATCATATTTCTTTAAAGCATCTTAAGATTCTAGGA------------------GTGAAAACTTGTATAGCAAATTCATTTTGCTAAGAATCATAATTTGTTATTGTTTGCaaataaatatctgagactgtggaatctgagagtatTTGAGCTTA-----AAGGTACCCAAGGGTACCAGAGATAACTCTTATTGAACACTACTATTTGCTAGATGTTGTATTAATATTATCTTCTTTATTCACAGAAATAATCATTAGAATAGTAATAATTATCAATTATTAAGTACTTGAG-TGTGTGC---ATAAGCACTCA--TGATTTTTACT----ATA----------------AGC--TGGAATGTgctg-------caaaaatatttattcatttaatcctgAAGACAACCATATGA-GTTGTACCATTATTTCTCCTATGTTATAGATGAGTAAAATGAGatagaaaggttaaataaattgcccaTGTCATACAT-TTAGTAAGCAATAGAACTGAAATTCAAAGCAGAGACTAGCTCCCAGGTCTATGTTTTTAACTACTGTATTAAGTGGTTAATAGAATTTCCTTAATAAACATACattgttattattctcatttaagAGACAAACA--TCTGAAAGTCAAATT---------AGCTAAATACCTG-------GCAAAAGTCATAAT------------------------------------------------------------- i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19895142 945 - 48547382 CTGAAACCTAATGAAG--GTGCAGCAGGTAAAAGCAGCAGATGAGGAAGGGTTAAGTCCACATTCGGAGCTACCCTGATTCCCTTACTGTTTCTGTGGTATTATTATTTTAGTCAAGGCCTAGGTTTACTCTGGGTATCTCAGAGTCTGCTGGAATCCTGGGTGGATCCCATAAAGTCTCCAGTAGTTGTCTCAGTACATTTAGTAATTTACTTACACCTTAGAttttggttttgttttgttttgttttgttttgtttCATTTTGGCCTTTAAAATGGGATACTGATAGTAGTTTGGAGAAGGCTTTGTTAATTTATTTTGATTTTAGATCTCTCTATGACTTATCATATTTCTTTAAAGCATCTTAAGATTCTAGGA------------------GTGAAAACTGGTATAGCGAATTCATTTTGCTAAGAATCATAATTTGTTATTGTTTGCAAATAAATATCTGAGACTGTGGAATCTGAGAGTATCTGAGCTTA-----AAGGTACCCTAGGATACCAGAGATAACTCTTATTGAACATTACTATTTGCCAGATGTTGTATTAATATTATCTTTTTTATCCACAGAAATGATCATTAGAATAGTAATAATTATC-------AAGTACTTGAG-TGTGTGC---ATAAGTACTCA--TGATTTTTACT----ATA----------------AGC--TGGAATgtgctg-------caaaaatattaattcatttaatcctgaagacaaccatatga-gttgtaccattatttctcctatgttgtagatgagtaaaatgagatagaaaggttaaacaaattgcccatgtcatacat-ttagtaagcaatagaactgaaattcaaagcagagactagctcccaggtctatgtttttaactactgtattaAGTGGTTAATAGAATTTCCTTAATAAACATACATTGTTATTATTCTCATTTAAGAGATAAACA--TCTGAAAGTCAAATT---------AGCTAAATACCTG-------ACAAAAGTCATAAC------------------------------------------------------------- i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21253057 927 - 190850796 CTGAAAGCTAATAAAG--TTGCAGCAGGTAAAAGCAGCAGATGAGGAAGGAGTAAATCCACATTCGAAGCTACCCTAATCCCCTCACTCTTCTGATGGTATTATTATTTTAGTCAAGGCCGAGCTTTATTCCGGGTATCT--GAGTCCGCTGGAATCTT-GTTGGATCCCACAAATTCTCCAAGAGTTGTC-CAGTATATTTAGTAATCTTTTTAGACCTTAGGTTTTG-----TTTTTGTTTTGTTTT---TTGTTTCATTTTGGCCTTTCAAATGGGATGCTGCTTGTAGTCTGCAGAAGGCTTTGTTAATTTATTTTGATGTTTGATCTCTCTATGATTTACCATATTTCTTTAAAGCATCTTAAGATTCTAGGA------------------ATGAAAACTGGTGTAGCAAATTCA-TTTGCTAAG-ATCATAATTTATTATTGTTTGCAAATAAATTTCTAAGAATGTGGAATCCAAGAGTATCTGAGCTTA-----AAGGTACCCTAGGGTACCAGAGATAACTCTTGTTTAACATTACTATTTGCCAGACATTGTATTA------TCTTCGTTATTCACAGAAACAATCATTAGAAGAGCAATAATTATCGATT----GGCACTTGAA-TGTGTGCATAATAAGCACTCA--TGATTTTTAGT----ATA----------------AGC--TGGAATGTGTTA-------CAAAAAtattaattcattc-attctaaagataaccatatga-gttgtaccattatttctcctatgtcatagatgagtaaactgagatagaaaggttaaataaattgcccctgtcatacat-ttagtaagcaatagaactgaaattcaaaaaagagactagctcccaggtctgtgttttta---acTGTATTAAGTGGTTAATAGAGTTTCCTTAATAAACGTACATTGTTATTATTCTGATTTAAGGGATAAACA--TCTGAAAGTCAAATC---------AGCTAAATACTTT-------GTGAAAGTCAGAGT------------------------------------------------------------- i calJac3.chr3 C 0 C 0 s canFam3.chr3 3826531 1020 - 91889043 ccgaaggctgaggaagttATATAGCCGGTAAAATCAAGAGACACTAAAAGTGTACATCCACATTCAAAGGTACCCTGATACCGACACTGTTTTTGCCTTGTGATTATTGTAGT-GAGGCCTAGGCTTACTGCAGGCACTTCCGTGTCCTCTGAAAGCCTAGGTTAATCTTACTAATTCTCTCACAGTTGTCCTGGCAGATTTAGTAATCTA-------CCTGGGTTTTG-----TTTT---TCAGCTTT-----CTTTCATTCTGGTCCTTGAAATGGAACCATAACTTTAG-TTGTAGAAGAC--------TTTATTTTGATTTTTGA--ACTCTGTGATTTATTATGGTTCCTTAAAACACCTTAAAATCCAGAAATATAAATACTATGATCATAAAGAAATTGGTCTAGTCAATTAATTTCGCTAAGCACCTTAATTTATAATCATTTATTAATAGTTTCCTGAGACTGT-------CAGAATATTTTAGTTGAATATTAAAATTAACTAGAGTCCCAGAGCGGTTTCTTACTGGATATTACTCTATGATAAATACTGTATTA------TCTTCTTCACTCACA-AAACAACCCTTAAAGTCATAATAATTAGTAGTTATGAACTATTTTATCTTTTTACataacaagcacacatgtgatgtttcct----ata----------------agccatgaaatgttttaagtatattaaacacaataattcatttaatcctcaagacagccccatgaggttgtactattgactt---aatttggtggatatgtaaactgagacaggcaagttaaataaattgccaaag--gtacatcttaataagcagtagaactgaaattcaaaccagaatccagttccgtagtctatgtctctaaccactg--tTAAGTGGTTAGAACAGTTTCCTTAATAGGTATACGTAGCtattatccttatttaaaaaatgatcaattttgaccttcaaattcaatgccaaagtcacatagactctaaaaagtagaagtcaaactcacacccagagcagtctggcaacaaagtctgtaatttttactaccatgcaacattaccTTC i canFam3.chr3 C 0 I 101 e mm10.chr5 49235244 3237 + 151834684 I a score=33606.000000 s hg38.chr4_KI270790v1_alt 131303 8 + 220246 CCCTAAGC s panTro4.chr4 21517661 8 + 193495092 CCCTAAGC i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21695006 8 + 198332218 CCCTAAGC i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20307017 8 - 85365473 CCCTAAGC i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16772328 8 + 184069350 CCCTAAGC i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20822138 8 + 189454096 CCCTAAGC i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16412058 8 + 178775436 CCCTAAGC i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19896087 8 - 48547382 CCCTAAGC i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21253984 8 - 190850796 CCCTAAGC i calJac3.chr3 C 0 I 192 s canFam3.chr3 3827652 8 - 91889043 ccctaaac i canFam3.chr3 I 101 I 68 e mm10.chr5 49235244 3237 + 151834684 I a score=6744.000000 s hg38.chr4_KI270790v1_alt 131311 4 + 220246 AATG s panTro4.chr4 21517669 4 + 193495092 AATG i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21695014 4 + 198332218 AACG i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20307025 4 - 85365473 AATG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16772336 4 + 184069350 AACT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20822146 4 + 189454096 AACT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16412066 4 + 178775436 AACT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19896095 4 - 48547382 AACT i chlSab2.chr27 C 0 C 0 s canFam3.chr3 3827728 4 - 91889043 AATG i canFam3.chr3 I 68 I 14 e mm10.chr5 49235244 3237 + 151834684 I e calJac3.chr3 21253992 192 - 190850796 I a score=986067.000000 s hg38.chr4_KI270790v1_alt 131315 321 + 220246 AGTATCTGAAATACTAGTGCACTTTATTCTCGTTAC-AAAACCTTGAAATACTTATATGCCCATAGAAAATCTAGTGAAAATCCAGACAGATCCCAATTG---TCACAGATTGGGATCAATACCACTATTCTGTCTAGGCTCTTGTGTGGGACAGTTCCCAGTCTAAGACCTCATATCTGCCTAT--CTCTGTGCTGTCC-TTGATCGCTGAACCAAGCCCCAAACCTATACTCCACAATTTCACGTCTGTCTGGGATGCGCTGCTCAGATGGGCTGTATGAGTGGCAACACAACCACTTCAAAAACAGAGACTGTCTCCTCCTGCCA s panTro4.chr4 21517673 321 + 193495092 AGTATCTGAAATACTAGTGCGGTTTATTCTCGTTAC-AAAACCTTGAAATACTTATATGCCCATAGAAAATCTAGTGAAAATCCAGACAGATCCCAATTG---TCACAGGTTGGGATCAATACCACTATTCTGTCTAGGCTCTTGTGTGGGACAGTTCCCAGTCTAAGACCTCATATCTGCCTAT--CTCTGTGCTGTCC-TTGATCCCTGAACCAAGCCCCAAACCTGTACTCCACAATTTCACTTCTGTCTGGGATGCACTGCTCAGACGGGCTGTATGAGTGGCAACACAACCACATCAAAAACAGAGACTGTCTCCTCCTGCCA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21695018 319 + 198332218 AGTGTCTGAAATACTAGTGCGCTTTATTCTCGTTAC-AAAACCTTGAAATACTTATATGCCCATAGAAAATCTAGTGAAAATCCAGACAGATCCCAATTG---TCACAGGTTGGGATCAATACCACTATTCTGTCTAGGCTCTTGTGTGGGACAGTTCCCAGTCTAAGACCTCATATCTGCCTAT--CTCTGTGCTGTCC-TTGATCCCTGAACCAAGCCCCAAACCTGTACTCTACAATATCACTTCTGTCTGGGATGTGCTGCTCAGACGGGCTGTATGAGGGGCAACACAACCACATCAAAAAC--AGACTGTCTCCTCCTGCCA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20307029 321 - 85365473 AGTATCTAAAATACTAGTGTGCTTTATTCTTGTTAC-AAAACCTTGAAATACTTATATGCCCACAGAAATTCTAGTGAAAATCCAGACAGACCCCAGTTG---TCACAGGTTGGGATCAATACCACTATTCTGTCTAGGCTCTTGTGTGGGACAGTTTCCAGTCTAAGACCTCATATCTGCCTAT--CTCTGTGCTTTCC-TTGATCCCTGAACCAAGCCCCAAACCTGTACTCTACAATTTCACTTCTATCTGGGATGTGCTGCTCAGATGGGATGTATGAGTGGCAACACATCCACATCAAAAACAGAGACTGTCTCCTCCTGCCA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16772340 315 + 184069350 AGTATCTGAAATACTAGTGCGCTTTATTCTTGTTAC-AAAACCTTGAA------ATATGCCCATAGAAAATCTAGTGAAAATCCAGAGAGATCCCAATTG---TCACGGGTTGGGATCAATAGCACTATTCTGTCTAGGCTTTTATGGGGGACAGTTCCCAGTCTAAGACCTTATATCTGCCTAT--CTCTGTGCTGTCC-TTGATCCCTGAACCAAGCGCCAAACCTGTACTCTACAATTTCACTTCTGTCTGGGATGAGCTGCTCAGATGGGACGTATGAGTGGCAACACATCCACATCAGAAACAGAGACTGTCTCCTCCTGCCA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20822150 322 + 189454096 AGTATCTGAAATACTAGTGCACTTTATTCTTGTTAC-AAAACCTTGAAATACTTATATGCCCATAGAAAATCTAGTGAAAATCCAGAGAGATCCCAATTG---TCACGGGTTGGGATCAATAGCACTATTCTGTCTAGGCTTTTATGGGGGACAGTTCCCAGTCTAAGACCTTATATCTGCCTAT--CTCTGTGCTGTCCTTTGATCCCTGAACCAAGCCCCAAACCTGTACTCTACAATTTCACTTCTGTCTGGGATGAGCTGCTCAGATGGGACGTATGAGTGGCAACACATCCACATCAGAAACAGAGACTGTCTCCTCCTGCCA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16412070 321 + 178775436 AGTATCTGAAATACTAGTGCGCTTTATTCTTGTTAC-AAAACCTTGAAATACTTATATGCCCATAGAAAATCTAGTGAAAATCCAGAGAGATCCCAATTG---TCACGGGTTGGGATCAATAGCACTATTCTGTCTAGGCTTTTATGGGGGACAGTTCCCAGTCTAAGACCTTATATCTGCCTAT--CTCTGTGCTGTCT-TTGATCCCTGAACCAAGCCCCAAACCTGGACTCTACAATTTCACTTCTGTCTGGGATGAGCTGCTCAGATGGGATGTATGAGTGGCAACACATCCACATCAGAAACAGAGACTGTCTCCTCCTGCCA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19896099 321 - 48547382 AGTATCTGAAATACTAGTGCGCTTTATTCTTGTTAC-AAAATCTTGAAATAATTATATGCCCATAGAAAATCTAGTGAAAATCCAGAGAGATCCCAATTG---TCACAGGTTGGGATCAATAGCACTATTCTGTCTAGGCTCTTGTGGGGGACAGTTCCCAGTCTAAGACCTTATATCTGCCTAT--CACTGTGCTGTCC-TTGATCCCTGAACCAAGCCCCAAACCTGTACTCTACAATTTCACTTCTGTCTGGGATGAGCTGTTCAGATGGGACGTATGAGTGGCAACACATCCACATAAAAAACAGAGACCGTCTCCTCCTGCCA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21254184 320 - 190850796 AATATGTGAAATAGCAGTGCACTTTATTCTTGCTAC-ACAACCTTCACATGCTCGTACACCCATAGGAAATCTAGTGAAAATCCAGAGAGATCCCAATTG---TCACAGGTTGGGATCAACAGCACTATTCTGGCTAGACTCTTGTGTGGGACAGTTTCCAGTGCAACACCTCATCTCTGCCTAT--CTCTGTGCTATTC-TTGAGCCCTGAACCAAGTCATGAATCTGTACTCTACAATTTCACTTCTGCCTGGGATATGCTGCTCAGATGGGATGTATAAGTGGCAACACATCCACATCA-AAACAGAGACTGTCTCCTCCTGCCA i calJac3.chr3 I 192 C 0 s canFam3.chr3 3827746 226 - 91889043 AGTATCTGAGACACTAGCACACTCTGCTTTTGTTACAAAAACCCTGAAATGCCAATGTGTCCACAGAAGGT-TGGTTAGGATCAAGATGAAGCCCAGCAGCTCTCCCCAGTTGGGATCGGCAGACCTATTCTGGCCATGCTCTGATATGGGACAGTTTGTATTCTGAGAGCTCCTATCTGCATTTTACCCCGTGCTATTC-TCAATTCCTGACTGAAG-------------------------------------------------------------------------------------GAATTGAGGT--------------- i canFam3.chr3 I 14 C 0 e mm10.chr5 49235244 3237 + 151834684 I a score=1972571.000000 s hg38.chr4_KI270790v1_alt 131636 588 + 220246 TGGGTAGCAATGACCACAACTCTCAAATCATTTTGCCAC----------TGGATACTAACATAAGAGCAAAAGACTCTATAATTAGGTGATGAATTCAGATCATTGGAGCACACATTTTACATTAAAACACTTCTGTGGCTTCACTCTCAATGGGCACACTATTTCAAATGCACTTTGTTATCTGTTGCAATATCACCAGACCTGCAGTAATATgctcaaa-tctcatttcctccatg-----aatccttttctgattcctacagtcctaccaagttgtctctcatctgaatcATAAAGAGC--GTATCACTCACT-TTATTTCTACCACCCTAATCCTTCATT-GTCTTGATTTCTCCAACAAGATATTAATCTTGTCCCAAGTAAAGCCTACATTATTATCCTCCACTTGGCCTTATGC-TGTCAGACTCT----GTATAGTAGATTCTATAATATTGCTCCCAGTGAACTGA---TCAAATTGGT-TGAGTTGCCAATGTAGTTCCCACTGCCCGGAATAACATCATATCCAATCAAATGTCTTTCTTGCTATCCTATTAAATGTGCTTACCTACAGAAGTTAAGTCTACCTCCTCAGTGGCTTCAT--CCACC---TC s panTro4.chr4 21517994 588 + 193495092 TGGGTAGCAATGACCACAACTCTCAAATCATTTTGCCAC----------TGGATACTAACATAAGAACAGAAGACTCTATAATTAGGTGATGAATTCAGATCATTGGAGCACACATTTTACATTAAAACACTTCTGTGGCTTCACTCTCAATGGGCACACTATTTCAAATGCACTTTCTTATCTGTTGCAGTATCACCAGACCTGCAGTAATATGCTTAAA-TCTCATTTCCTCCATG-----AATCCTTTTCTGATTCCTACAGTCCTACCAAGTAGTCTTTCATCTGAATCATAAACAGC--ATATCACTCACT-TTATTTCTATCACCCTAATCCTTCATT-GTCTTGATTTCTCCGTCAAGATGTTAATCTTGTCCCAAGTAAAGGCTACATTATTACCCTCCACTTGGCCTTATGC-TGTCAGACTCT----GTATAGTAGATTCTATAATATTGCTCCCAGTGAACTGA---TCAAATTGGT-TGAATTGCCAATGTAGTTCCCACTGCCCGGAATAACATCATATCCAATCAAATGTCTTTCTTGCTATCCTATTAAATGTGCTTGCCTACGGAAGTTAAGTCTACCTCCTCACTGGCTTCAT--CCACC---TC i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21695337 588 + 198332218 TGGGTAGCAATGACCACAACTCTCAAATCATTTTGCCAC----------TGGATACTAACATAAGAGCAGAAGACTCTATAATTTGGTGATGAATTCAGATCATTGGAGCACACATTTTATATTAAAACACTTCTGTGGCTTCACTCTCAATGGGCACACTATTTCAAATGCACTTTCTTATCTGTTGCAATATCACCAGAcctgcaggaatatgctcaaa-tctcatttcctccatg-----aatccttttctgattcctacagtccTACCAAGTAGTCTGTCATCTGAATCATAAAGAGC--ATATCTCTCACC-TTATTTCTATCACCCTAATCCTTCATT-GTCTTGATTTCTCCATCAAGATGTTAATCTTGTCCCAAGTAAAGGCTACATGATTACCCTCCACTTGGCCTTATGC-TGTCAGACTCT----GTATAGTAGATTCTATAATATTGCTCCCAGTGAACTGA---TCAAATTGGT-TGAGTTGCCAATGTAGTTCCCACTGCCTGGAATAACATCATATCCAATCAAATGTCTTTCTTGCTATCCTATTAAATGTGCTTACCTACTGAAGTTAAGTCTATCTCCTCACTGGCTTCAT--CCACC---TC i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20307350 588 - 85365473 TGGGTAGCAATGACCACAACTCTCAAATCATTTTGCCAC----------TGGATACTAACATAAGAGCCAAAGACTCTATAATTAGGTGATGAATTCAGATCATTGGAGCACACATTTTACATTAAAACACTTCTGCGGCTTCACTCTCAATGGGCACACTATTTCAAGTGCACTTTCTTATCTGTTGCAGTATCACCAGAcctgcaggaatatgctcaaa-tctcatttcctccatg-----aatccttttctgattcctacagtccTACCAAGTAGTCTGTCATCTGAATCATAAAGAGC--ATATCACTCACT-TTATTTCTATCACCCTAATTCTTCATT-GTCTTGATTTCTCCATCAAGATGTTAATCTTGTCCCAAGTAAAGGCTACATTATTACCCTCCACTTGGCCTTATGC-TGTCAGACTCT----ATATAATAGATTCTATAATATTGCTCCCAGTGAACTGA---TCCATTTGAT-TGAGCTGCCAACGTAGTTCCCACTGCCCAGAATAACATCATATCCAATCAGATGTCTTTCTTGCTATCCTATTAAATGTGCTCACCTACTGAAGTTAAGTCTACCTCCTCACTGGCTTCAT--CCACC---TC i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16772655 588 + 184069350 TGGGTAGCAATGACCACAACTCTCAAATCATTTTGCCAC----------TGGATACTAACATAAGAGCAGAAGCATCTATAATTAGGTAATGAATTCAGATCATTGGAGCACACATTTTGCATTAAAACACTCCTGTGGCTTCACTCTCAGTGGGCACACTATTTCAAATACACTTTCTTATCTGTTGCAATATCATCAGACCTGCAGGAATATGCTCAAG-TCTCATTTCCTCCATG-----AATACTTTTCTGATTCCTACAGTCTTACCCAGTAGTCTCTCATCTGAATCATAAAGAGC--ATATCACTCACT-TTATTTCTATCACCCTAATCCTTCATT-GTCTTGATTTCTCCATCAAGATATTAATCTTGTCCCAAGTAAAGACTGCATTATTACCCTCTACTTGGCCTTATGC-TGTCAGACTCT----GCATAGTAGATTCCATAATATTGCTCCCAGTGAACTGA---TCAAATTGGT-TGAGTTGCCACTGTAGTTCCCACTGCCCTGAATAACATCATATCCAATCAAATGTCTTTCTTGCTATCCTATTAAATGTGCTCACCTACTGAAGTTAAGTCTACCTCCTCACTGGCTTCAT--CCACC---TC i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20822472 588 + 189454096 TGGGTAGCAATGACCACAACTCTCAAATCATTTTGCCAC----------TGGATACTAACATAAGAGCAGAAGCATCTATAATTAGGTAATGAATTCAGATCATTGGAGCACACATTTTGCATTAAAACACTCCTGTGGCTTCACTCTCAGTGGGCACACTATTTCAAATACACTTTCTTATCTGTTGCAATATCATCAGACCTGCAGGAATATGCTCAAA-TCTCATTTCCTCCATG-----AATACTTTTCTGATTCCTACAGTCTTACCCAGTAGTCTCTCATCTGAATCATAAAGAGC--ATATCACTCACT-TTATTTCTATCACCCTAATCCTTCATT-GTCTTGATTTCTCCATCAAGATATTAATCTTGTCCCAAGTAAAGACTGCATTATTACCCTCTACTTGGCCTTATGC-TGTCAGACTCT----GCATAGTAGATTCCATAATATTGCTCCCAGTGAACTGA---TCAAATTGGT-TGAGTTGCCACTGTAGTTCCCACTGCCCTGAATAACATCATATCCAATCAAATGTCTTTCTTGCTATCCTATTAAATGTGCTCACCTACTGAAGTTAAGTCTACCTCCTCACTGGCTTCAT--CCACC---TC i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16412391 587 + 178775436 TGGGTAGCGATGACCACAACTCTCAAATCATTTTGCCAC----------TGGATACTAACATAAGAGCAGAAGCATCTATAATTAGGTAATGAATTCAGATCATTGGAGCACACATTTTGCATTAAAACACTCCTGTGGCTTCACTCTCAGTGGGCATACTATTTCAAATACACTTTCTTATCTGTTGCAATATCATCAGACCTGCA-GAATATGCTCACA-TCTCATTTCCTCCATG-----AATCCTTTTCTGATTCCTACAGTCATACCCAGCAGTCTCTCATCTGAATCATAAAGAGC--ATATCACTCACT-TTATTTCTATCACCCTAATCCTTCATT-GTCTTGATTTCTCCATCAAGATATTAATCTTGTCCCAAGTAAAGGCTGCATTATTACCCTCTACTTGGCCTTATGC-TCTTAGACTCT----GCATAGTAGATTCCATAATATTGCTCCCAGTGAACTGA---TCAAATTGGT-TGAGTTGCCACTGTAGTTCCCACTGCCCTGAATAACATCATATCCAATCAAACGTCTTTCTTGCTATCCTATTAAATGTGCTCACCTACTGAAGTTAAGTCTACCTCCTCACTGGCTTCAT--CCACC---TC i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19896420 588 - 48547382 TGGGTAGCAATGACCACAACTCTCAAATCATTTTGCCAC----------TGGATACTAACATAAAAGCAGAAGCATCTATAATTAGGTAATGAATTCAGATCACTGGAGCACACATTTTGCATTAAAACACTCCTGTGGCTTCACTCTCAGTGGGCACACTATTTCAAATACACTTTCTTATCTGTTGCAATATCATCAGAcctgcaggaatatgctcaaa-tctcatttcctccatg-----aatccttttctgattcctacagtcatacccagcagtctctcatctgaatcATAAAGAGC--ATATCACTCACT-TTATTTCTATCACCCTAATCCTTCATT-GTCTTGATTTCTCCATCAAGATATTAATCTTGTCCCAAGTAAAGACTGCGTTATTACCCTCTACTTGGCCTTATGC-TGCAAGACTCT----GCATAGTAGATTCCATAATATTGCTCCCAGTGAACTGA---TCAAATTGGT-TGAGTTGCCACTGTAGTTCCCACTGCCCTGAATAACATCATATCCAATCAAATGTCTTTCTTGCTATCCTATTAAATGTGCTCACCTACTGAAGTTAAGTCTACCTCCTCACTAGCTTCAT--CCACC---TC i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21254504 591 - 190850796 TGGGTAGCAATGATCATAACTCTCAAATCATTTTGCCAC----------TGGATTCTAACATACGAGCAGAAGACTCTGTAATTAGGTGATGAATTCAGATCATTGGAGCACACATGTTGTACTAAAACATTTCTTTGGCTTCATTCTCAATGGGCACACTATTTCAAATGCTCTTTCTTATCTGCTGCAATATCATCAGACCTACAGAAATATgctcaaattttcatttcctccatg-----aagccttttctgaTTGCTACAGTAATACCAAGTAGTCTCTCTTCGGAATCCTGAAGAGCATATATCGCTCACT-TTACTTCTATCACCCTAATCCTTGACT-GTCTTGACTTCTCCATCAAGATGTTAATCTTGTCCCAAGTAAAGACTACATTATTATCTTCTGCTTAGCCTTATGC-TATCAGACTCT----GTATAATAGATTCTATAGTATTGCTCCCAGTGAACTGA---TCAAATTGGT-TGAATTGCCAATGTAGTTCCCACTGCCCAGAATGACATCAAACCCAATCAAATTTATTTCTTGCTATCGTATTAAATGTGCTCTCCTGCTGCAGTTAAGTCTACCTCCTCACTGGCTTCAT--CCACC---TC i calJac3.chr3 C 0 C 0 s mm10.chr5 49238481 488 + 151834684 TGGACAACAA-----ATATCTTGCAAATAATTTTGCAACGATTGACAAATTAAAATTGACATA--AGCAGACGA--CTGTAA-TAGTTGATGAGCG-AGAGAACTGGGTCACACATTATGCATAACAA-------GTGGCTTCATTCCCATT------ACTGCTTACAACA---------------------ATCACCAAATTCCTAAGACTAGATGGAGA-GCTGA----CTCCATGTCTGTGGTCCTTTGC--ATCCCTATCGTT------ACTAATTTGTCATCTGAATCCTAATATTC---TGTCACCTGCT-TTATATCTTTCATCC----CCT-------CCCTGACTTAGTCATCAAG-----------------AGGAAAGATTTCATTATAATCCCCTGCCTCTCATTGTGC------------------ACTGTAAATTTCA-AATATC-CTCTTATTATCTTCA---T--GATGGGTCTGAGATGCTATTGTTGTTCCCATTA-CTAGAATAGCATTTTACTTAGTCTAATTTATTCCTCATCATCCTATAAAATGTGCTGACCTA----------------CTCTTC--TGATCCCATGCCCACCTCGTC i mm10.chr5 I 3237 C 0 s canFam3.chr3 3827972 512 - 91889043 ---------------------------------------------------------------------------------GTTAGACGATCACATCCGATAATCTGACCACACATTTTGCATTAAAACACTTCTGT--CTTTGCTGTCAGTGTCCACACCACTTCAGATGTCCTTTCTTATCTGTTGCAATAGCATCCAGTCATTTGCCATATGC-CAAA-TCTCAT----TCCATG-----AAACTTTTTCCCATTTCTAGAGTC-----AAATAATCTCTTTTTTGAATTTTAACAAGC--AGTTTTCTCATGACTAGGTTTATCACCCCGATCTGTTGTTGGTCTTCATTTCTCCATCAAGATGGTAATCTCTTACAGAG---AGATTACATTAGAATCCCCTCCAGGGACTTGCACATAGCAGACCCTAAGGACACAGTGGACTCTACATGACTGCCCATCCTGAACTGAATTCCAATTTGAC-TGAGTTGCCAGTGGAGCTCTCACTTCCCAGAATAGCACCTTGCCCAATCAAATGTACTTCTTCCTGTCTTCCTAAATGTGCTCCCCTACACCAGCTAAGCCCAATTCCTCTCTGGTCCCTT--CCATC---TC i canFam3.chr3 C 0 I 196 a score=329227.000000 s hg38.chr4_KI270790v1_alt 132224 118 + 220246 TTCATTAATGAGTCAATATTGTTGTCTTTGTTGGTATA---AAGAGTAAGAAGAAGCACATAGTGTATTTCTGTCCATACTAATATAAAGA-------------TACCGAATTGCTATATTGAATCGCTATAGA- s panTro4.chr4 21518582 118 + 193495092 TTCATTAATGAGTCAATGTTGCTGTCTTTGTTGGTATA---AAGAGTAAGAAGAAGCACATAGTGTATTTCTGTCGGTACTAATATAAAGA-------------TACTGAATTGCTATATTGAATCACTATAGA- i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21695925 118 + 198332218 TTCATTAATGAGTCAATGTTGTTGTCTTTGTTGGTATA---AAGAGTAAGAAGAAGCACATAGTATATTTCTGTCGGTACTAATGTAAAGA-------------TACTGAATTGCTATATTGAATCACTACAGA- i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20307938 118 - 85365473 TTCATTAATGAGTCAATGTTGTGGTCTTTGTTGGTATA---AAGAGTAAGAAGAAGCACATAGTGTATTTCTATCGGTACTAATGTAAAGA-------------TACTGAATTGCTATATTGAATCACTATAGA- i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16773243 128 + 184069350 CTCATTAATGAGTCAATGTT---TTCTTTGTTGGTATA---AAGAGTAAGAAGAAGCACATAGTATATTTCTATCGGTATTAATATAAATAATACCGATAGAATCACTGAATCACTATATTGAAGCACTGTAGA- i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20823060 128 + 189454096 CTCATTAATGAGTCAATGTT---TTCTTTGTTGGTATA---AAGAGTAAGAAGAAGCACATAGTATATTTCTATCGGTATTAATATAAATAATACCGATAGAATCACTGAATCACTATATTGAAGCACTGTAGA- i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16412978 128 + 178775436 CTCATTAATGAGGCAATGTT---GTCTTTGTTGGTATA---AAGAGTAAGAAGAAACACATAGTATATTTCTATTggtattaatataaataacacCGATAGAATCACTGAATCACTATATTGAAGCACTGTAGA- i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19897008 128 - 48547382 CTCATTAATGAGTCAATGTT---ATCTTTGTTGGTATA---AAGAGTACGAAGAAGCACATAGTATATTTCTATCGGTATTAATATAAATAATACCGATAGAATCACTGAATCACTATATTGAAGCACTGTAGA- i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21255095 115 - 190850796 TTCATTAATGAGTCAACATT---GTTCTTGTTGGCATA---AAGAGTGAGAAGCAGCACATAATGTATTTCTATCAGTACTCATGTAAAGA-------------TATGGAATCGCTATATTGAATTACTGTAGA- i calJac3.chr3 C 0 C 0 s mm10.chr5 49238969 108 + 151834684 TTTATTACCTAGTAGA-GTT---TCACTGGATGGCACA------GGTAAAATCCAGTAT---GTATATTTATTAAAATGATAGATTAGGGA-------------CATGAAATCTCCATCTTGAATAACAATTGA- i mm10.chr5 C 0 I 10 s canFam3.chr3 3828680 109 - 91889043 CTCATTAATGACCTGGCGTTGTTGTCCTGGTTAGCGTAAGAAAAAAGAAGAAGAGGCATACAGTGCAATTAC-------------TAGAGA-------------TATTAAATCCCTATATTGAATTATGGTGGTA i canFam3.chr3 I 196 C 0 a score=580309.000000 s hg38.chr4_KI270790v1_alt 132342 192 + 220246 ATAGCGCTAAACCAAAAATTTAGATCTCCAATCAGATGTTCTTTTTTTTT----CCTACAAGATTTTAATGAAATAAATACTTTAAAAATGTCCTGGTATTTACATTTTCAATTTAACAGCCA--------------------------TGCCCCATGGT-TGGCAAATGCAAGCGCATGGG----ACATGGCAATACTAT----------------------------------------------------------------------------------AGGTGATTTGCTCTCCATTGCCCAAG s panTro4.chr4 21518700 193 + 193495092 ATAGCGCTAAACCAAAAATTTAGATTTCCAATCAGATGTTCTTTTTTTTT---TCCTACAAGATTTTAATGAAATAAATACTTTAAAAATGTCCTGGTATTTACATTTTCAATTTAACAGCCA--------------------------TGCCCCATGGT-TGGCAAATGCAAGAACACGGG----ACATGGCAATACTAT----------------------------------------------------------------------------------AGGTGATTTGCTCTCCATTGCCCAAG i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21696043 192 + 198332218 ATAGTGCTAAACCAAAAATTTAGATTTCCAATCAGATGTTCTTTTTTTTT----CCTACAAGATTTTAATGAAATAAATAGTTTAAAAATGTCCTGGTATTTACATTTTCAATTTAACAGCCA--------------------------TGCCCCATGGT-TGGCAAATGCAAACACATGGG----ACATGGCAATACTAT----------------------------------------------------------------------------------AGGTGATTTGCTCTCCATTGCCCACG i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20308056 196 - 85365473 ATAGTGCTAAACTAAAAATTTAGATTTCCAATCAGATGTTCTTTCTTTTTTTTTCCTACAAGATTTCAATGAAATAAATGGTTTAAAAACGTCCTGGTATTTACATTTTCAATTTAAAAGCCA--------------------------TGCCCCACGGT-TGGCAAATGCAAGCGCATGGG----ACATGGCAATACTAT----------------------------------------------------------------------------------AGGTGATTTGTTCTCCATTGCCCATG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16773371 195 + 184069350 ATAATGCTAAACCAAAAATTTAGATTTCCAATCAGATGTTCTTGTTTTAT-TTTTCTACAAGATTTTAATGAAATAAATGGTTTAAAAACATTCTGGTATTTACATTTTCAATTTAACAGCCA--------------------------TGTCCCATGGT-TGGCAAATGCAAGCACGTGGG----ACATGGCAATACTAT----------------------------------------------------------------------------------AGGTGATGTGCTCTCCATTGCCCATC i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20823188 195 + 189454096 ATAATGCTAAACCAAAAATTTAGATTTCCAATCAGATGTTCTTGTTTTAT-TTTTCTACAAGATTTTAATGAAATAAATAGTTTAAAAACATTCTGGTATTTACATTTTCAATTTAACAGCCA--------------------------TGTCCCATGGT-TGGCAAATGCAAGCACGTGGG----ACATGGCAATACTAT----------------------------------------------------------------------------------AGGTGATGTGCTCTCCATTGCCCATC i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16413106 195 + 178775436 ATAATGCTAAACCAAAAATTTAGATTTCCAATCAGatgttcttgttttat-ttttctacaagattttaatgaaataaatagtttaaaaacattctggtatttacattttcaatttaaCAGCCA--------------------------TGTCCCATGGT-TGGCAAACGCAAGCACGTGGG----ACATGGCAATACTAT----------------------------------------------------------------------------------AGGTGATGTGCTCTCCATTGCCCATC i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19897136 195 - 48547382 ATAATGCTAAACCAAAAACTTAGATTTCCAATCAGATGTTCTTGTTTTAT-TTTTCTACAAGATTTTAATGAAATAAATAGTTTAAAAACATTCTGGTATTTACATTTTCAATTTAACAGCCA--------------------------CGTCCCATGGT-TGGCAAATGCAAGCACATGGG----ATATGGCAATACTAT----------------------------------------------------------------------------------AGGTGATGCGCTCTCCATTGCCCATC i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21255210 274 - 190850796 ATAGTGCTAAACCAAAAATTTAGATTTCCAATCAGATGTTCTTTTTTTTT---CCCTACAAGATATTAATGAAATAAATAATTT-AAAACATTTTGGTATTTGCATTTTCAATTTAACAGCCA--------------------------TGTTCCATGCT-TGGCAAATGCAAGAGCACGGG----ACATGGCAATACAATAGGTAATGTGCTCTCCATCACCCATCTGCAGCTTCCCTCACAGGTGATGTACTCTATACCACCCATCTGCGGCTTCCCTCACAGGTGATGTGCTCTCCACCACCCATC i calJac3.chr3 C 0 C 0 s canFam3.chr3 3828789 214 - 91889043 ATAATCTCTAAATATAAATTTAGATTAGTGATCTGATGTTCTT------T----TCTAAAATTTTTTAATGAAATGAGTAGTTCTAAAACATTGTTGTA---ACATCTTCAATTCTACAGCCATTGAAGCACCCAGGTATGCAACCCTGTGCCCCATAACACAGTAAACTCAAGAGCGTGGGACACACATGGCAATGTGAT----------------------------------------------------------------------------------ATGTGACGTGCTCCCCAGCACCCCGC i canFam3.chr3 C 0 C 0 e mm10.chr5 49239077 10 + 151834684 I a score=758095.000000 s hg38.chr4_KI270790v1_alt 132534 212 + 220246 TGTGGCAA-CCCCCACTCTCTTGGTTTGTTACTCTCCCTGGCACTATCCATGAAGTTA-TTAACACATGCCACTGATTATATCTATGGCAAATCAATCA-CATTCTACTACCCATTGCATTAAACATGAACAACTTTACCCTCTTATTTTAATAGCAAATCAGGGAGTCATTATTTAGAAGGCACAATCTCAAATG---AGAAGGTAAAATTTAGATT s panTro4.chr4 21518893 212 + 193495092 TGTGGCAA-CCCCCACTCTCTTGGTTTGTTACTCTCCCTGGCACTATCCATGAAGTTA-TTAACACATGCCACTGATTATATCTATGGCAAATCAATCA-CATTCTACTACCCATTGCATTAAACATGAACAACTTTACCCTCTTATTTTAATAGCAAATCAGGGAGTCATTATTTAGAAGGCACAATCTCAAATG---AGAAGGTAAAGTTTAGATT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21696235 213 + 198332218 TGTGGCAA-CCCCCACTCTCTTGGTTTGTTACTCTCCCTGGCACTATCCATGAAGTTACTTAACACATCCCACTGATTATATCTATGGCAAATCAATCA-CATTCTACTACCCATTGCATTAAACATGAACAACTTTACCCTCTTATTTTAATGGCAAATCAGGGAGTCATTATTTAGAAGGCACAATCTCAAATG---AGAAGCTAAAGTTTAGATT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20308252 213 - 85365473 TGTGGCAA-TCCCCACTCTCTTGGTTTGTTACTCTCCCTGGCACTATCCATGAAGTTACTTAACACATGCCACTCCTTATATCTATGGCAAATCAATCA-CATTCTACTACCCGTTGCATTAAACATGAACAACTTTACCCTCTCATTTTAATAGCAAATCAGGGAGTCATTATTTAGAAGGCACAATCTCAAATG---AGAAGGTAAAGTTTAGATT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16773566 210 + 184069350 TGTGGCAA-CCCTCACTCTCTTGGTTTGTTAATTTCCCTGGCACTATCCATGAAGTTACTTAACATATGCCACTGATTATATCTATGGCAGATCAATCA-CATTCTACTACCCATTGCATTAAACATGAACGACTTTACCCTCTCACTTTAATAGCAAATCAGGAAGTC---ATTTAGAAGGCACAATCTCAAATG---AGAAAGTAAAGGTTAGATT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20823383 210 + 189454096 TGTGGCAA-CCCTCACTCTCTTGGTTTGTTAATTTCCCTGGCACTATCCATGAAGTTACTTAACATATGCCACTGATTATATCTATGGCAGATCAATCA-CATTCTACTACCCATTGCATTAAACATGAACGACTTTACCCTCTCACTTTAATAGCAAATCAGGAAGTC---ATTTAGAAGGCACAATCTCAAATG---AGAAAGTAAAGGTTAGATT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16413301 210 + 178775436 TGTGGCAA-CCCTCACTCTCTCGGTTTGTTAATTTCCCTGGCACCATCCATGAAGTTACTTAACATATGCCACTGATTATATCTATGGCAGATCAATCA-CATTCTACTACCCTTTGCATTAAACATGAACGACTTTACCCTCTCACTTTAATAGCAAATCAGGAAGTC---ATTTAGAAGGCACAATCTCAAATG---AGAAAGTAAAGGTTagatt i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19897331 210 - 48547382 TGTGGCAA-CCCTCACTCTCTTGGTCTGTTAATCTCCCTGGCACTATCCATGAAGTTACTTAACATATGCCACTGATTATATCTATGGCAGATCAATCA-CATTCTACTACCCATTGCATTAAACATGAACGACTTTACCCTCTCACTTTAATAGCAAATCAGGAAGTC---ATTTAGAAGGCACAATCTCAAATG---AGAAAGTAAAGGTTAGATT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21255484 212 - 190850796 TGTGGCTT-CCCTCACTCTCTTGGTTTGTT-CTCTCCCTAATACCATCTATGAAGTTACTTAACACATGCCACTGATTATATCTATGGTAAATCAACCA-CATTCTACTACCCACTGCAGTGAACATGAACCACTTAACCCCCTCATTATAATAGCAAATCAGAGAGTTATTATTTAGAAGTCACAATTTCAAATG---AGAAGGTAAAGGTTAGATT i calJac3.chr3 C 0 C 0 s mm10.chr5 49239087 196 + 151834684 TATGGCAAGTTTTCAGTCTCTTTTAATATAAATCTTCTT-GCACCTCCCAT---GTTACTTAACACACAGCACTGAATATAAGAAGAGTAAATGGAT--------------CCACTGCTTTAAACATGAACAACCTT---CTCTCA-TTGAAGAGAAAACTGAGGAATCCTCATTAAGAATGCACAGTTtccagtggaaagaagacagcattttcatt i mm10.chr5 I 10 I 1730 s canFam3.chr3 3829003 213 - 91889043 TATGGTAG-CCCTCACTCTCTTTATACCGTACTCCCTCTGGCACTGTATACGATGTTATTTAACACATGTCATGGATTAAAACTATGATAAATCCATCACCATTCTATTACCCACTGCATTAACCATGAACAACTTTATTCTCTCA-CTGAATAGCAAACTGAAGAATCATTCTTCAGAAGGCACAGTCTCACATG---ACAAGATAAAGGTCAGATT i canFam3.chr3 C 0 C 0 a score=522309.000000 s hg38.chr4_KI270790v1_alt 132746 187 + 220246 TACAATTTTATTTTCCCCCAATTTCTTCTAAT--CATTCTTATTTTCCTAGAATAAAAAAAATCTAGAAAGTTTTGAGGGGAAAAAAAACCACAACA-------------------------------------------------------------GTTTTTCAG-----------TCTTTTGTA-ATTGAAAGTGAATAGAATGGTGATTTGAGGG---------------------------------------------------TGCTCCAGAATCCTAAAGTATT--------CTAAAACAAAGA-----------------------------------CTACATTTT s panTro4.chr4 21519105 187 + 193495092 TACAATTTTATTTTCCCCCAATTTCTTCTAAT--CATTCTTATTTTCCTAGAATAAAAAAAATCTAGAAAGTTTTGAGGGGAAAAAAAACCACAACA-------------------------------------------------------------GTTGTTCAG-----------TCTTTTGTA-ACTGAAAGTGAATAGAATGGTGATTTGAGGG---------------------------------------------------TGCTCCAGAATCCTAAAGTATT--------CTAAAACAAAGA-----------------------------------CTACATTTT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21696448 185 + 198332218 TACAATTTTATTTTCCCCCAATTTCTTCTAAT--CATTCTTATTTTCCTAGAAT--AAAAAATCTAGAAAGTTTTGCGGGGAAAAAAAATCGCAACA-------------------------------------------------------------GTTTTTCAG-----------TCTTTTGTA-ATTGAAAGTGAATAGAATGGTGATTTGAGGG---------------------------------------------------TGCTCCAGAATCCTAAAGTATT--------CTAAAACAAAGA-----------------------------------CTACATTTT i ponAbe2.chr4 C 0 I 147 s nomLeu3.chr20 20308465 187 - 85365473 TACGATTTTATTTTCCCCCAATTTCTTCTAAT--CATTCTTATCTTCCTAGAATAAAAAAAATCTAGAAAGTTTTGAGGGGAAAAAAAACTGCAAAA-------------------------------------------------------------GTTTTTCAG-----------TCTTTTGTA-ATTGAAAGTGAATAGAATGGTGATTTGAGGG---------------------------------------------------TGCTCCAGAATCCTAAAGTATT--------CTAAAACAAAGA-----------------------------------CTACATTTT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16773776 184 + 184069350 TACAATTTTATTTTTCCCCAATTTCTTCTAAT--CATTCTTATTTTCTTAGAAT--AAAAAAACTAGAATATTTCGA-GGGAAAAAAAACAACAACA-------------------------------------------------------------GTTTTTCAG-----------TCTTTTGTA-ATTGAAAGTGAACAGAATGGTGATTTGAGGG---------------------------------------------------TGCTCCAGAATCCTTAAGTATT--------CTAAAACAAAGA-----------------------------------CTACATTTT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20823593 184 + 189454096 TACAATTTTATTTTTCCCCAATTTCTTCTAAT--CATTCTTATTTTCTTAGAAT--AAAAAAACTAGAATATTTCGA-GGGAAAAAAAACAACAACA-------------------------------------------------------------GTTTTTCAG-----------TCTTTTGTA-ATTGAAAGTGAACAGAATGGTGATTTGAGGG---------------------------------------------------TGCTCCAGAATCCTTAAGTATT--------CTAAAACAAAGA-----------------------------------CTACATTTT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16413511 184 + 178775436 tacaattttatttttccccaatttcttctaat--cattattattttcttagaat--aaaaaaactagaatatttcga-gggaaaaaaaacaacaaca-------------------------------------------------------------gtttTTCAG-----------TCTTTTGTA-ATTGAAAGTGAACAGAATGGTGATTTGAGGG---------------------------------------------------TGCTCCAGAATCCTTAAGTATT--------CTAAAACAAAGA-----------------------------------CTACATTTt i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19897541 184 - 48547382 TACAATTTTATTTTTCCCCAATTTCTTCTAAT--CATTCTTATTTTCTTAGAAT--AAAAAAACTAGAAAATTTCAA-GGGAAAAAAAACAACAACA-------------------------------------------------------------GTTTTTCAG-----------TCTTTTGTA-ATTGAAAGTGAACAGAATGGTGATTTGAGGG---------------------------------------------------TGCTCCAGAATCCTTAAGTATT--------CTAAAACAAAGA-----------------------------------CTACATTTT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21255696 184 - 190850796 TAAAATTTTACTTCCCCCCAGTTCCTTCTAAT--TATGCTTACTTGCCTAGACT-AAAAACATCTAGAAAGTTTTGAGGGGAAAAAAAACG--CACA-------------------------------------------------------------TTTTTTTAG-----------TCTTTTGTA-ATTGAAAGTGAATAGAATGGTGGTTTGAGGG---------------------------------------------------TACTCCAGAATCCTAAAGTATT--------CTAAAACAAAGA-----------------------------------CTACATTTT i calJac3.chr3 C 0 C 0 s canFam3.chr3 3829216 353 - 91889043 TGCAA-TTTAATTTCCTCAGATTCCTTTTTTTCCCATTCCTATTTCCTCAGAAT-CAAAAGATCTAGGAAGTTTTCA-AGGAAAACAAGGCAAAACAAAAGTTAATTTGAAGATGCCCCTGAATTGCAAATTATATTCTAAAACAAAAATTTCACTTTAttttttagatttatttacttattttatatatagagagagaacagggggaggggcagagggaaagaatctcagacagattctccactgagcacagagcctgacatggggcttagtctcacaatcccaaaatcgtacctgagatgaaatcaaagagttagtcacttagctgactgagccacccagctgctccAAATTTC i canFam3.chr3 C 0 C 0 e mm10.chr5 49239283 1730 + 151834684 I a score=14725.000000 s hg38.chr4_KI270790v1_alt 132933 8 + 220246 CCTTCTAA-- s panTro4.chr4 21519292 8 + 193495092 GCTTCtaa-- i panTro4.chr4 C 0 C 0 s nomLeu3.chr20 20308652 8 - 85365473 GCTTTTAA-- i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16773960 8 + 184069350 GCTTTTAC-- i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20823777 8 + 189454096 GCTTTTAC-- i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16413695 8 + 178775436 gcttttac-- i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19897725 8 - 48547382 GCTTTTAC-- i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21255880 8 - 190850796 GCTTTTAA-- i calJac3.chr3 C 0 C 0 s canFam3.chr3 3829569 10 - 91889043 ACTTTTAAAA i canFam3.chr3 C 0 C 0 e mm10.chr5 49239283 1730 + 151834684 I e ponAbe2.chr4 21696633 147 + 198332218 I a score=430379.000000 s hg38.chr4_KI270790v1_alt 132941 131 + 220246 AAATATATGTTTAATATTAAATATATCTTTTAATCTAATTATCTTTGAGTTGCAGTTTATCTTATATCTTAATTATATTTTAGTTAGCCACCATACTATATTTATTAACCTTACCAGAAAATATAGTACAT---- s panTro4.chr4 21519300 131 + 193495092 aaatatatgtttaatattaaatatatcttttaatctaattatCTTTGAGTTGCAGTTTATCTTATATCTTAATTATATTTCAGTTAGCCATCATACTATATTTATTAACTTTACCAGAAAATATAGTACAT---- i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21696780 131 + 198332218 aaataTATGTTTAATATTTAATATATCTTTTAATCTAATTATCTTTGAGTTGCAGTTTATCTTATATCTTAATTATATTTTAGTTAGCCATCACACTACATTTATTAACTTTACCAGAAAACATAGTACAT---- i ponAbe2.chr4 I 147 C 0 s nomLeu3.chr20 20308660 127 - 85365473 AAATATATATTTAATATTAAATACATCTTTTAATC----TATCTCTGAGTTGCAGTttatcttatatcttaattatattttagttagccatcatactatatttattaACCTTACCAGAAAACATAGTACAT---- i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16773968 131 + 184069350 aaatatatatttaatattaaatCTATCTTTTAATCTAATTATCTTTGAGTTGCAGTTTATCTTATATCTTAATTATATTTTAGTTAACCATCATACTATCTTTATTAACCTTTTCAGAAAACATAGTACAT---- i rheMac3.chr5 C 0 M 654 s macFas5.chr5 20823785 131 + 189454096 AAATATATATTTAATATTAAATCTATCTTTTAATCTAATTATCTTTGAGTTGCAGTTTATCTTATATCTTAATTATATTTTAGTTAACCATCATACTATCTTTATTAACCTTACCAGAAAACATAGTACAT---- i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16413703 131 + 178775436 aaatatatatttaatattaaatctaTCTTTTAATCTAATTATCTTTGAGTTGCAGTTTATCTTATAtcttaattatattttagttAACCATCATACTATCTTTATTAACCTTACCAGAAAACATagtacat---- i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19897733 131 - 48547382 AAATATATATTTAATATTAAATCTATCTTTTAATCTAATTATCTTTGAGTTGCAGTTTATCTTATATCTTAATTATATTTTAGTTAACTATCATACTATATTTATTAACCTTACCAGAAAACATAGTACAT---- i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21255888 130 - 190850796 AAATACATATTTAATA-TAAATCTATCGTTTAATCTAATTATCTTTGAGTTGCCATTTATCTTATATCTTAATTATATCTTAGTTAACCCTTGTACTATATTTAGTAACCTCACCAGAAAACATAGTACAA---- i calJac3.chr3 C 0 C 0 s canFam3.chr3 3829579 131 - 91889043 AAATATACATTTAATACTAA----CTCTTTCAATCTCATTCTCTTTAAGTTACTATTTATCTTAAATCTTAGTTACTTACATCTTAGTCATATTGCCATATTTGTTAATCTTATCAGAAAATGTAATATACACAT i canFam3.chr3 C 0 C 0 e mm10.chr5 49239283 1730 + 151834684 I a score=51887.000000 s hg38.chr4_KI270790v1_alt 133072 19 + 220246 GCACATATACACATTTTTT s panTro4.chr4 21519431 19 + 193495092 GCACATATACACATTTTTT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21696911 19 + 198332218 GAACATATACACATTTTTG i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20308787 19 - 85365473 GCACATATACACATTTTTT i nomLeu3.chr20 C 0 C 0 s macFas5.chr5 20823916 19 + 189454096 GCACATATACACATTTTTT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16413834 19 + 178775436 gcacatatacacatttttt i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19897864 19 - 48547382 GCACATATACACATTTTTT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21256018 18 - 190850796 ACACATATATACATTTTT- i calJac3.chr3 C 0 C 0 s canFam3.chr3 3829710 19 - 91889043 ACACATATGTACAtttttt i canFam3.chr3 C 0 I 284 e mm10.chr5 49239283 1730 + 151834684 I e rheMac3.chr5 16774099 654 + 184069350 M a score=23940.000000 s hg38.chr4_KI270790v1_alt 133091 9 + 220246 GGAAGAAGA s panTro4.chr4 21519450 9 + 193495092 GGAAGAAGA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21696930 9 + 198332218 GGAAGAAGA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20308806 9 - 85365473 GGAAGAAGA i nomLeu3.chr20 C 0 C 0 s macFas5.chr5 20823935 9 + 189454096 GGAAGAAGA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16413853 9 + 178775436 ggaagaaga i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19897883 9 - 48547382 GGAAGAAGA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21256036 9 - 190850796 GGAAGAAGA i calJac3.chr3 C 0 C 0 e mm10.chr5 49239283 1730 + 151834684 I e rheMac3.chr5 16774099 654 + 184069350 M e canFam3.chr3 3829729 284 - 91889043 I a score=167435.000000 s hg38.chr4_KI270790v1_alt 133100 60 + 220246 ATAATATAAATAAATGTTGCCAGAATTCTACAGGGAAACTGAT-TACTACAATTTATCTTC s panTro4.chr4 21519459 60 + 193495092 ATAATATAAATAAATGTTTCCAGAATTCTACAGGGAAACTGAT-TACTACAATTTATCTCC i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21696939 60 + 198332218 ATAATATAAATAAATGTTTCCATAATTCTACAGGGAAACTGAT-TACTATCATTTATCTCT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20308815 60 - 85365473 ATAATATAAATAAATGTTTCCAGAATTCTACAGGGAAACTGAT-TACTACAATTTATCTCC i nomLeu3.chr20 C 0 C 0 s macFas5.chr5 20823944 60 + 189454096 ATAATATAAATAAATGTTTCCAGAATTCTACAAGGAAACTGAT-TACTACAATTTATCTCC i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16413862 60 + 178775436 ataatataaataaatgtttccagAATTCTACAAGGAAACTGAT-TACTACAATTTATCTCC i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19897892 60 - 48547382 ATAATATAAATAAATGTTTCCAGAATTCTACAAGGAAACTGAT-TACTACAATTTATCTCC i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21256045 60 - 190850796 AGAATAGAAATAAATGTTCCCAGAATTCTACAGGAAAACTGAT-GACTACGATTTATCTCC i calJac3.chr3 C 0 C 0 s canFam3.chr3 3830013 61 - 91889043 ATAATATACATAAATGTTTCCAGAATTCTCCAGGGAAATTGCTCttttaatatttatttcc i canFam3.chr3 I 284 I 449 e mm10.chr5 49239283 1730 + 151834684 I e rheMac3.chr5 16774099 654 + 184069350 M a score=44605.000000 s hg38.chr4_KI270790v1_alt 133160 19 + 220246 CTAAT-AGCGAACTTGTCAT s panTro4.chr4 21519519 19 + 193495092 CTAAT-AGCGAACTTGTCAT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21696999 20 + 198332218 CTAATAAGCAAACTTGTCAT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20308875 19 - 85365473 CTAAT-AGCAAACTTGTCAT i nomLeu3.chr20 C 0 C 0 s macFas5.chr5 20824004 19 + 189454096 CTAAT-AGCAAACTTGTCAT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16413922 19 + 178775436 CTAAT-AGCAAACTTGtcat i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19897952 19 - 48547382 CTAAT-AGCAAACTTGTCAC i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21256105 19 - 190850796 CTAAT-AGCAAACTTGTCAT i calJac3.chr3 C 0 C 0 e mm10.chr5 49239283 1730 + 151834684 I e rheMac3.chr5 16774099 654 + 184069350 M e canFam3.chr3 3830074 449 - 91889043 I a score=1050073.000000 s hg38.chr4_KI270790v1_alt 133179 442 + 220246 AACAATTTTAAACATTCTTTTTCATTCTATCTCTCTTATCCTGATCTCATATTAATATGAGATCAAT---AAAAAAGACTGAT--TGGAAGGCAG--GGGTG-----GGCACTGGCCATGGACCCTTACTCCGTGCTTATCATACACAATAATCCTCATTTTATTCCATTTTCT-GAAAAAGACCTACTCCTACAGATTATTATTAAGAAGTTGACAGATAACTGAGAAACTCATGAATAGA-GAAAAAATAAATTCACATCACACATCACAAAAAA-GAACAATTAGCCAATTAGTCAAATTCCTTTTTGAGATCTGGGTTCTTGTCTGTTCATTGTCCCTCATCTTCCTGCTAACTAGTATTCTCT-----CTGTGTCCATACACAAGACATGAACTTGAAAAATCATtctattgttctcaacatttcagctctggccctcaacttacgtaccccactca s panTro4.chr4 21519538 442 + 193495092 AACAATTTTAAACATTCTTTTTCATTCTATCTCTCTTATCCTGATCTCATATTAATATGAGATCAAT---AAAAAAGACTGAT--TGGAAGGCAG--GGGTG-----GGCACTAGCCATGGACCCTTACTCCGTGCTTATCATACACAATAATCCTTATTTTATTCCATTTTCT-GAAAAAGACCTACTCCTACAGATTATTATTAAGAAGTTGACAGATAACTGAGAAACTCATGAATAGA-GAAAAAATAAATTCACATCACACATCACAAAAAA-CAACAATTAGCCAATTAGTCAAATTCCTTTTTGAGATCTGGGTTCTTGTCTGTTCATTGCCCCTCATCTTCCTGCTAACTAGTATTCTCT-----CTGTGTCCCTACACAAGACATGAACTTGAAAAATCATtctattgttctcaacatttcagctctggccctcaacttacgtaccccactca i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21697019 439 + 198332218 AACAATTTTAAACATTCTTTTTCATTCTCTCTCTCTTATCCTGATCTCATATTAATATGAGATCAAT---AAAAAAGACTGAT--TGGAAGGCAG--GGGTG-----GGCACTGGCCATGGACCCTTACTTCGTGCTTATCATACACAATAATCCTTATTTTATTCCATTTTCT-GAAAAAGACCTACTCCTACAGATTATTATTAAGAAGTTGACAGATAACTGACAAACTCATGAATAGA-GAAAAAATAAATTCACATCACACATCAC---AAA-GAACAATTAGCCAATTAGTCAAATTCCTCTTTGAGATCTGGGTTCATGTCTGTTCATTGTCCCTCATCTTCCTGCTAGCTAGTATTCTCT-----CTGTGTCCCTACACAAGACATGAACTTGAAAAATCATTCTATTGTTCTCAAAATTTCAGCTCTGGCCCTCAACTTACATACCCCACTCA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20308894 441 - 85365473 AACAATTTTAAACATTCTTTTTCATTCTATCTCTCTTATCCTGATCTCATATTAAC-TGAGATCAAT---AAAAAAGACTGAT--TGGAAGGCAG--GGGTG-----GGCACTGGCCATGGACCCTTACTCCGTGCTTATCATACACAATAATCCTTATTTTATGCCATTTTCT-GAAAAAGACCTACTCCTACAGATTATTATTAAGAAGTTGACAGATAACTGAGAAACTCATGAATAGA-GAAAAAATAAATTCACATCACACATCACAAAAAA-GAACAATTAGCCAATTAGTCAAATTCCTCTTTGAGATCTGGGTTCTTGTCTGTTCATTGTCCCTCATCTTCCTGCTAGCTAGTATTCTCT-----CTGTGTCCCTACACAAGACATGAACTTGAAAAATCATtctattgttctcaacatttcagctccagccctcaacttacataccccactca i nomLeu3.chr20 C 0 C 0 s macFas5.chr5 20824023 444 + 189454096 AACAATTTTAAACATTCTTTTTCATTATATCTCTCCTATATTGATCTCATATTAATATGAGATCAATT-AAAAAAAAACTGAT--TGGAAGGCAG--GGGTG-----GGCACTGGCTATGGACCCTTACTCTGTGCTTATCATCCACAATAATCCTTATTTTATTCAATTTTCC-AAAAAATACCTACTCCTACAGATTATTATTAAGAAGTTGAAAGATAACTGAGAAACTCATGAATAGA-GAAAAAATAAATCCACATCACACATCACACAAAA-GAACAATTAGCCAATTAGTCAAATTCCTCTTTGAGATCTGAGTTCTTGTCTGTTCATTGTCCCTCATCTTCCTGCTAGCTAGTATTCTCT-----CTGTGTCCCTACACAAGACATGAACTTGCAAAACCATtctattgttctcaacatgttagctctggccctcaaattaggtaccccactca i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16413941 442 + 178775436 aacaattttaaacattctttttcattatatCTCTCCTATCCTGATCTTATATTAATATgagatcaattaaaaaaaaaactgat--tggAAGGCAG--GGGTG-----GGCACTGGCTATGGACCCTTACTCTGTGCTTATCATCCACAATAAtccttattttattcaattttcc-aAAAAATACCTACTCCTACAG---ATTATTAAGAAGTTGAAAGATAACTGAGAAACTcatgaataga-gaaaaaataaatccacatcACACATCACACAAAA-GAACAATTAGCCAATTAGTCAAATTCCTCTTTGAGATCTGAGTTCTTGTCTGTTCATTGTCCCTCATCTTCCTGCTAGCTAGTATTCTCT-----CTGTGTCCCTACACAAGACATGAACTTGCAAAACCATTCTATTGTTCTCAACATGTTAGCTCTGGCCCTCAAATTAGGTACCCCACTCA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19897971 406 - 48547382 AACAATTTTAAACATTCTTTTTCATTATATCTCTCCT-------------------------------------AAAACTGAT--TGGAAGGCAG--GGGTG-----GGCACTGGCTATGGACCCTTACTC--TGCTTATCATCCACGATAATCCTTATTTTATTCAATTTTCC-AGAAAATACCTACTCCTACAGATTATTATTAAGAAGTTGAAAGATAACTGAGAAACTCATGAATAGA-GAAAAAATAAATCCACATCACACATCACAAAAAA-GAACAATTAGCCAATTAGTCAAATTCCTCTTTGAGATCTGAGTTCTTGTCTGTTCATTGTCCCTCATCTTCCTGCTAGCTAGTATTCTCT-----CTGTGTCCCTACACAAGACATGAACTTGCAAAACCATtctattgttctcagcatgttagctctagccctcaaattaggtaccccactca i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21256124 414 - 190850796 AACAATTTTAAACATTACTTTTCATTCTATCTCTCCTATCCTGATTTCATACTATTATGAGATCAAT--AAAAAAAGACCGAT--TGGAAGCCAG--GGGTG-----GGCACTGGCCATGGACCCTTACTCTGTGCTTATCATACGCAACAATCCTTATTTTATTCCATTTTCCAAAAAAAGATCTACTCTT-CA----------------------------CGAGAAACTCATGAATGGAGGAAAAAATAAATTCACATTACACATCACAAAAAAGGAATAATTAGCCAATTAGTCAAATTCCTCTTTGAGATCTGGGTTATCCTCTGTTCATTGTCCCTCATCTTCCCTCTAGCTAGTATTCTCT-----GTGT---CCAACACAAGATATGAACTTAAAAAATCATTCTCTTGTTCTCAATATTTCAGTTCTGGCCCTCAACTTATGTACCCCACTCA i calJac3.chr3 C 0 C 0 s canFam3.chr3 3830523 425 - 91889043 AACAAATATAGATATATATTTGCATTT--TTTCTCTTATCCTGATC-----CAAATATGAGAGCAAT-------ATGATTGTTTATGGAGGGTGGATGGGTAAGTTTGGTACCTACCATGGACCTTTACTCTCTGCTTATCTTCTACCATAATCCTTATTTTATTTTATTTCTC--CAAAAGATCTAGTCTTATAGATAATTCTTAAGGAGTGGACAGCTGGCTAAAATACTCACCAAGAGAGGAAAATGGGAGTTCACAGTGCACATCACAGAAAA-GAA--------CAAATAGTCAAATTCCTCTTTGAGATTTCACTTCCAG--TGCTGAGTATCCCATGTTTTCCTGCCAGCTATTCATCTCTCCTCCCTCTTCTTCCACATAGGGTATAGACTAAAAG--------TGTTTTGCTCAACAT-TCAGC-CAAGCCCCAGGTTTGTGTATCCCACTCA i canFam3.chr3 I 449 I 1091 e mm10.chr5 49239283 1730 + 151834684 I e rheMac3.chr5 16774099 654 + 184069350 M a score=154401.000000 s hg38.chr4_KI270790v1_alt 133621 69 + 220246 acCATATCACAACTCACAGAAAAATCACCACAGGCTCCTCAGGCCTGCCCCTTGGAAGACATTCTGCTA s panTro4.chr4 21519980 69 + 193495092 acCATATCACAACTCACAGAAAAATCACCACAGGCTCCTCAGGCCTCCCCCTTGGAAGACATTCTGCTA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21697458 69 + 198332218 ACCATATCACAACTCACAGAAAAATCACCACAGGCTCCTCAGGCCTGCCCATTGGAAGATATTCTGTTA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20309335 69 - 85365473 acCATATCACAACTCACAGAAAAATCATCACGGGCTCCTCAGGCCTGCCCCTTGGAAAATATTCTGCTA i nomLeu3.chr20 C 0 C 0 s macFas5.chr5 20824467 69 + 189454096 acCATATCACAATTCAGAGAAAAATCACCACAGGCTCCTCAGTTCTGCCCCTTGGAAGATATCCTGCTA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16414383 69 + 178775436 ACCATATCACAATTCAGAGAAAAATCACCACAGGCTCCTCAGTTCTGCCCCTTGGAAGATATCCTGCTA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19898377 69 - 48547382 acCATATCACAATTCAGAGAAAAATCACCACAGGCTCCTCAGTTCTGCCCCTTGGAAGATATCCTGCTA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21256538 67 - 190850796 ACCATATCACAATTC--AGAAAAATCATTGCAGGCTCCTCAGGCCTGCCCCTTGGAAGGTATCTTGCCA i calJac3.chr3 C 0 I 7 e mm10.chr5 49239283 1730 + 151834684 I e rheMac3.chr5 16774099 654 + 184069350 M e canFam3.chr3 3830948 1091 - 91889043 I a score=202264.000000 s hg38.chr4_KI270790v1_alt 133690 145 + 220246 C-AATGATGCttt------------------------ttttttttttttttttttttttttttagacagtgtctcactctggtgcccaggctggagtgcagtggcgtgatctcggctcattgcaagctccatctcccgggttcacgccattctcctgcctcagcctccct s panTro4.chr4 21520049 138 + 193495092 C-AATGATGCttt------------------------ttttttttttttttttttg-------agacagtgtctcactctggtgcccaggctggagtgcagtggcatgatctcggctcattgcaagctccatctcccgggttcaggccattctcctgcctcagcctccct i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21697527 136 + 198332218 C-AACGATGCttt------------------------ttttttttttttttttg---------agacagagtctcactctggtgcccaggctggagtgcagtggcgtgatctgggctcattgcaagctccacctcccgggttcacgccattctcctgcctcagcctcctg i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20309404 132 - 85365473 C-AATGACGCttt------------------------ttttttttttttg-------------agacagagtctcactctggtgcccagactggagtgcagtggcgtgatctcggctcattgcaagctccacctcccgggttcatgccattctctcacctcagcctcccg i nomLeu3.chr20 C 0 C 0 s macFas5.chr5 20824536 155 + 189454096 C-AGTGATGCttttctttttctttttcttt-------ttctttttttttttttttg-------agacagagtctcgctatgttgccaaggctggagtgcagtggcgtgatctcagctcactgcaagctctacctcctgggttcacgccattctccttcctcaacctcccg i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16414452 162 + 178775436 CAAGTgatgctttgcttttcttttttttttct-tttcttttttttttttttttttg-------agacagagtctcgctgtgttgccaaggctggagtgcagtggtgtgatctcagctcactgcaagctctacctcctgggttcacgccgttctccttcctcaacctcccg i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19898446 162 - 48547382 C-AGTGATGCTTTGCTTTCTCTTTCtttctttcttttttttttttttttttttttg-------agacagagtctcgctatgttgccaaggctgtagtgcagtggtgcgatctcagctcactgcaagctctacctcctgggttctcgccattctccttcctcaagctcccg i chlSab2.chr27 C 0 C 0 e mm10.chr5 49239283 1730 + 151834684 I e rheMac3.chr5 16774099 654 + 184069350 M e calJac3.chr3 21256605 7 - 190850796 I e canFam3.chr3 3830948 1091 - 91889043 I a score=412495.000000 s hg38.chr4_KI270790v1_alt 133835 182 + 220246 agtagctgggactacagacgctcgccaccacgcccagctaattttttgtatttttagtggagatggggtttcaccgtgttagtgaggatggtctcgatctcctgacctcgtgatccgc---ctgcctcggcctcccaaagtgctgggattacaggtgtgagccaccgcgcctggccTACAATGAT s panTro4.chr4 21520187 182 + 193495092 agtagctgggactacagacgctcgccaccacgcccagctaattttttgtatttttaatagagatggggtttcaccgtgttagtgaggatggtctcgatctcctgacctcgtgatccgc---ctgcctcggcctcccaaagtgctgggattacaggcgtgagccaccgcgcctggccTACAATGAT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21697663 182 + 198332218 agtagctgggactacagacgctcgtcaccatgcccagctaattttttgtatttttagtagagatggggtttcaccgtgttagtgaggatggtctcgatctcctgacctcgtgatccgc---ctgcctcagcctcccaaagtgctgggattacaggcgtgagccaccgcgcccggccTACAATGAT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20309536 182 - 85365473 agtagctgggactacagaccctcaccaccatgctcagctaattttttgtgtttttagtagagatgggatttcaccgtgttagtgaggatggtctcgatctcctgacctcgtgatccgc---ctgcctcagcctcccaaagtgctgggattacaggtgtgagccaccgcgcccggccTACAATGAT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16774753 185 + 184069350 agtagctgggactacaggtgcctgccaccacaccctgctaattttttgtattttcagtagaaacagcgtttttctgtgttagttaggatggtctcaatctcctgacctcatgatccgcccgccgcctcagcctcccaaagtgctgggattacaggcgtgagccactgcacccagccTACCATGAT i rheMac3.chr5 M 654 C 0 s macFas5.chr5 20824691 185 + 189454096 agtagctgggactacaggtgcctgccaccacaccctgctaattttttgtattttcagtagaaacagcgttttgctgtgttagttaggatggtctcaatctcctgacctcatgatccgcccgccgcctcggcctcccaaagtgctgggattacaggcgtgagccactgtacccagccTACCATGAT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16414614 185 + 178775436 agtagctgggactacaggtgcctgccaccacaccctgctaattttttgtattttcagtagaaacagagttttgctgtgttagttaggatggtctcaatctcctgacctcatgatccacccgccgcctcggcctcccaaagtgctgggattacaggcgtgagccactgcacccagcctaccaTGAT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19898608 185 - 48547382 agtagctgggactacaggcgcctgccaccacaccctgctaattttttgtattttcagtagaaacagcgttttgctgtgttagttaggatggtctcaatctcctgacctcatgatccgcccgccgcctcggcctcccaaagtactgggattacaggtgtgagccactgcacccagccCACCATGAT i chlSab2.chr27 C 0 C 0 e mm10.chr5 49239283 1730 + 151834684 I e calJac3.chr3 21256605 7 - 190850796 I e canFam3.chr3 3830948 1091 - 91889043 I a score=860179.000000 s hg38.chr4_KI270790v1_alt 134017 302 + 220246 ACTTTTAAAAAACAGATGAATACACTGATGTCCTTCATCCCTGCAAAACGAGGTAAACCATATAAAAATATACTCCAAAAATTCATTTTAAAGCAATTTCTACTTTAAGTCCAGTAAGCTGTAATGTCACATGTTTTGTATGTGGCAAGTGTTTTAATTTATTATTTAAAATGAGAATAAATGTGCAAATAAGCAGTAAGAGCTCATTGTATGAATATGTTATAGTTCAGGGAAGAA-GACACTGAGACTGTGTGAGGCTCTTTATAAACTGTTTAGTAATTCCTGGACTCTGGTAAATTATG s panTro4.chr4 21520369 302 + 193495092 ACTTTTAAAAAACAGATGAATACACTGATGTCCTTCATCCCTGCAAAACGAGGTAAACCATATAAAAACATACTCCAAAAATTCATTTTAAAGCAATTTCTACTTTAAGTCCATTAAGCTGTAATGCCACATGTTTTGTATGTGGCAAGTGttttaatttattatttaaaatGAGAATAAATGTGCAAATAAGCAGTAAGAGCTCATTGTATGAATATGTTATAGTTCAGGGAAGAA-GACACTGAGACTGTGTGAGGCTCTTTATAAACTGTTTAGTAATTCCTGGAGTCTGGTAAATTATG i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21697845 302 + 198332218 ACTTTTAAAAAACAGATGGATACACTGATGTCCTTCATCCCTGCAAAACGAGTTAAACCATATAAAAATATACTCCAAAAATTCATTTTAAAGCAATTTCTACTTTAAGTCCATTAAGCTGTAATGCCACATGTTTTGTGTGTGGCAAGTGttttaatttattatttaaaatGAGAATAAATGTGCAAATAAGCAGTAAGAGCTCATTGTATGAATATGTTACAGTTCAGGGAAGAA-GACACTGAGACTGTGTGAGGCTCTTTATAAACTGTTTAGTAATTCCTGGACTCTGGTAAATTATG i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20309718 297 - 85365473 ATTTTCAAAAAACAGATGGATACACTGATGTCCTTCATCCCTGCAAAACGAGGTAAACCATATAAAAATATACTCCAAAAATTCATTTTAAAGCAATTTCTACTTTAAGTCCATTAAGCTGTAATGCCACATGTTTTGTATGTGGCAAGTGT-----TTTATTATTTAAAATGAGAATAAATGTACAAATAAGCAGTAAGAGCTCATTGTATGAATATGTTACAGTTCAGGGAAGAA-GATACTGAGACTGTGTGAGGCTCTTTATAAACTGTTTAGTAATTCCTGGACTCTGGTAAATTATG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16774938 297 + 184069350 ACTTTCAAATAACAGATGGATACATTGATATCCTTCATCCCTACAAAATGAGATAAACCATATAAAAATATGCTCCAAAAATTCATTTTAAAGCAATTTCTACTTTAGTTCCATTAAGCTGTAATGCCACATGTTTTTTAAGTGGCAAGTGttttaatttattatttaaaatGAGAATCAATATGAAAATAAGTAGCAAGAGCTCATTGTATGAATATGCTATAGTTCAGGGAAGAA-GACACTGAGACTGTGTGAGGCTCTTTAGAAACTG----GTAATTCCTGGACTCTGGCAAATTAT- i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20824876 297 + 189454096 ACTTTCAAATAACAGATGGATACATTGATATCCTTCATCCCTACAAAATGAGATAAACCATATAAAAATATGCTCCAAAAATTCATTTTAAAGCAATTTCTACTTTAGTTCCATTAAGCTGTAATGCCACATGTTTTTTAAGTGGCAAGTGTTTTAATTTATTATTTAAAATGAGAATCAATATGAAAATAAGTAGCAAGAGCTCATTGTATGAATATGCTATAGTTCAGGGAAGAA-GACACTGAGACTGTGTGAGGCCCTTTAGAAACTG----GTAATTCCTGGACTCTGGCAAATTAT- i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16414799 297 + 178775436 ACTTTCAAATAACAGATGGATACATTGATATCCTTCATCCCTACAAAATGAGATAAACCATATAAAAATATGCtccaaaaattcattttaaagcaatttcTACTTTAGTTCCATTAAGCTGTAATGCCACATGTTTTTTAAGTGGCAagtgttttaatttattatttaaaatgagaatcAATATGAAAATAAGTAGCAAGAGCTCATTGTATGAATATGCTATAGTTCAGGGAAGAA-GACACTGAGACTGTGTGAGGCTCTTTAGAAACTG----GTAATTCCTGGACTCTGGCAAATTAT- i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19898793 297 - 48547382 ACTTTCAAATAACAGATGGATACATTGATATCCTTCATTCCTACAAAATGAGATAAACCATATAAAAATATGCTCCAAAAATTCATTTTAAAGCAATTTCTACTTTAGTTCCATTAAGCTGTAATGCCACATGTTTTTTAAGTGGCAAGTGTTTTAATTTATTATTTAAAATGAGAATCAATATGAAAATAAGTAGCAAGAGCTCATTGTATGAATATGCTATAGTTCAGGGAAGAA-GACACTGAGATTGTGTGAGGCTCTTTAGAAACTG----GTAATTCCTGGACTCTGGCAAATTAT- i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21256612 301 - 190850796 ACTTTCAAATAATAAATGGATACAGTGTTGTCCTTCAATCTTGCAAAATGAGGTAAACCATATAAAAATATACTCC-AAAATTCATTTTAAAGCACTATCTACTTTAAGTCCATTAAGCTCTAATGCCATATGTTTTGTATGTGGCAACTGCTATAATTTA-TATTTAAAATGAGAATAAATGTGCAAATAAGTAGTAAGAGCTCATTGTATGAATATGCTATAGCTTAGGGAAGAAGGACACTGAGATGGCGTAAGGCTCTTTAGAAGCTGTTTAGTAATTTCTGTACTCTGGTAAATTATG i calJac3.chr3 I 7 C 0 e mm10.chr5 49239283 1730 + 151834684 I e canFam3.chr3 3830948 1091 - 91889043 I a score=791489.000000 s hg38.chr4_KI270790v1_alt 134319 233 + 220246 GGGAGATGCAGT-TTACAGACATGGTAATATCTTGCCTGAAATGGAAAGAACTACCAGACACACCTTCCACAGTCTCAAGCTCTAAA--TCATAAATATGTTGAGCCAGTCGTTTACATCAATTTCAAACACGAAGGGCAGAGATTAGAGACACATTCAATAGAAAGTATAAATTGGCTGAATAATTATTTGCCAAAATTTTCATTCACATATAGATCATTTCAAGAGGAAATCAG s panTro4.chr4 21520671 233 + 193495092 GGGAGATGCAGT-TTGCAGACATGGTAATATCTTGCCTGAAATGGAAAGAACTACCAGACACACTTTCCACAGTCTCAAGCTCTAAA--TCATAAATATGTTGAGCCAGTCATTTACATCAATTTCAAACATGAAGGGCAGAGATTAGAGACACATTCAATAGAAAGTATAAATTGGCTGAATAATTATTTGCCAAAATTTTTATTCACATATAGATCATTTCAAGAGGAAATCAG i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21698147 233 + 198332218 GGGAGATGCAGT-TTACAGACATCGTAATATCTTGCCTGAAATGGAAAGAACTGCCAGACACACCTTCCACAGTCTCAAGCTCTAAA--TCATAAATATGTTGAGCCAGTCGTTTACATCAATTTCAAACATGAAGGGCAGAGATTAGAGACACATTCAATAGAAAGTATAAATTGGCTGAATAATTATTTTCCAACATTTTCATTCACATATAGATCATTTCAAGAAGAAATCAG i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20310015 233 - 85365473 GGGAGATGCAGT-TTACAGACATGGTAATATCTTGCCTGAAATGGAAAGAACTACCAGACACACCTTCCACAGTCTCAAGCTCTAAA--TCATAAATATGCTGAGCCAGTCGTTTATATCAATTTCAAACATGAAGGGCAACAATTAGAGACACATTCAATATAAAGTATAAATTGGCTGAATAATTATTTGCCAACATTTTCATTCACATATAGATCATTTCAAGAGGAAATTAG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16775235 232 + 184069350 GGGAGATGCAGT-TTACAGGAATGGTAATAGCTTGCCTGAAATGGAAAGAACTACCAGACATACCTTTCACAGTCTCAAGCTCTAAA--TTACAAATATGTTGAGCCAGTCATTTACATCAATTTCAAACATGAAGGGCAGAAATTAGAGACATA-TCAATAGAAAGTATAAATTGGCTGAATAATAATTTGTCAACATTTTCATTTACATATAGATCATTTCAAGAGGAAATTAG i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20825173 232 + 189454096 GGGAGACGCCGT-TTACAGGAATGGTAATAGCTTGCCTGAAATGGAAAGAACTACCAGACATACCTTTCACAGTCTCAAGCTCTAAA--TTATAAATATGTTGAGCCAGTCGTTTACATCAATTTTAAACATGAAGGGCAGAAATTAGAGACATA-TCAATAGAAAGTATAAATTGGCTGAATAATAATTTGTCAACATTTTCATTTACATATAGATCATTTCAAGAGGAAATTAG i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16415096 232 + 178775436 GGGAGATGCAGT-TTACAGGAATGGTAATAGCTTGCCTGAAATGGAAAGAACTACCAGACATACCTTTCACAGTCTCAAGCtctaaa--ttataaatatgttgaGCCAGTCGCTTACATCAATTTCAAACATGAAGGGCAGAAATTAGAGACATA-TCAATAGAAAGTATAAATTGGCTGAATAATTATTTGCCaacattttcatttacatataGATCATTTCAAGAGGAAATTAG i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19899090 232 - 48547382 GGGAGGTGCAGT-TTACAGGAATGGTAATAGCTTGCCTGAAATGGAAAGAACTACCAGACATACCTTCCACAGTCTCAAGCTCTAAA--TCATAAATATGTTGAGCCAGTCGTTTACATCAATTTCAAACATGAAGGGCAGCAATTAGAGACATA-TCAATAGAAAGTATAAATTGACTGAATAATTATTTGCCAACATTTTCATTTACATATAGATCATTTCAAGAGGAAATTAG i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21256913 233 - 190850796 TGGAGATGCAGT-TTATAGGCATGGTAATATCTTGCCTGAAATGAAAAGATCTACCAGACACACTTTTCACAGTCTCAAGCTCTAAA--TCACAAATACATTCAGCCAGTCGTTTACATCAGTTTCAAACATGAAGGGTAGCAATTAGAGACAAATTAAATAGAAAGTAAAAATTGGCTGAATAATTATTTGCCAACATTTTCATTTACATATAGATCATTTCAAGAGGAAATTAG i calJac3.chr3 C 0 C 0 s canFam3.chr3 3832039 231 - 91889043 GGGAGGTGCAGTATAACACAGATGGTTATACCTTGCCTGAAGTGGATAGGATTAGCAGACACACCTCCCATATTCCCAGGTTCTGAAACACACAGAGACATTCACCCAGTGGTTCACATCAATTTCAAACATGAAGAGTAGCAATTAGAGACAAA-TTCATTGACACTACAAATTGGTTGAAAAG----CTGTCAACACCTTGCTTGACCTATAGACCATTTCAAAAGGAAGTcat i canFam3.chr3 I 1091 I 142 e mm10.chr5 49239283 1730 + 151834684 I a score=711380.000000 s hg38.chr4_KI270790v1_alt 134552 215 + 220246 GGTAATCAAGCATTGGCCTAACTCTGAAGTGGCAAAGTAGGGTTGTTTAGAAAGGAAAAATTCTGTCAAATTTAGCATATTTATTTTCTGTTTACATAATCTAGTAG-AGGCCCCGCACATCATAGAAAGTCAAATATTTGTTCATCTGATTATGACATGA-TTTTAAATTCCCTTGTGTTTGCTTTATGATATATACTCCTGTCCCTCCTGTTTGA s panTro4.chr4 21520904 215 + 193495092 GGTAATCAAGCATTGGCCTAACTCTGAAGTGGCAAAGTAGGGTTGTCTAGAAAGGAAAAATTCTGTCAAATTTAGCGTATTTATTTTCTGTTTACATAATCAAGTAG-AGGCCCCGCACATCATAGAAAGTCAAATATTTGTTCATCTGATTATGACGTGA-TTTTAAATTCCCTTGTGTTTGCTTTATGATATATACTCCTGTCCCTCCTGTTTGA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21698380 215 + 198332218 GGTAATCAAGCATTGGCCTAGCTCTGAAGTGGCAAAGTAGGGTTGTCTAGAAAGGAAAAATTCTGTCAAATTTAGCGTATTTATTTCCTGTTTACATAATCAAGTAG-AGGCCCTGCACATCATAGAAAGTCAAATATTTGTTCATCTGATTATGACGTGA-TTTTAAACTCCCTTGTGTTTGCTTTATGATATATACTCCTGTCCCTCCTGTTTGA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20310248 212 - 85365473 GGTAATCGAGCATTGGCCTAACTCTGAAGTGGCAAAGTAGGGTTGTCTAGAAAGGAAAAATTCCGTCAAATTTAGCG----TATTTTCTGTTTACATAATCAAGTAG-AGGCCCCGCACATCATAGAAAGTCAAATATTTGTTCATCTGATTATGATGTGATTTTTAAATTCCCTTGTGTTTGCTTTATGATATATACTCCTGTTTCTCCTGTTTGA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16775467 215 + 184069350 GGTAATCAAGCATTGGCCTAACTCTGATGTGGCAAAGTAGGGTTATCTAGAAAGGAAAAATTCTGTCAAAATTATCGTATTTATTTTCTGTTTACATAATCGAGTAG-AGGCCCCGCACATCATGGAAAGTCAAATATTTATTCATCTGATTATGACATGA-TTTTAAATTCCTTTGTGTTTGCTTTATGATATATACTCCTGTTGCTCCTGTTTGA i rheMac3.chr5 C 0 I 93 s macFas5.chr5 20825405 215 + 189454096 GGTAATCAAGCATTGGCCTAACTCTGATGTGGCAAAGTAGGGTTATCTAGAAAGGAAAAATTCTGTCAAAATTATCGTATTTATTTTCTGTTTACATAATCGAGTAG-AGGCCCCGCACATGATGGAAAGTCAAATATTTATTCATCTGATTATGACATGA-TTTTAAATTCCGTTGTGTTTGCTTTATGATATATACTCCTGTCGCTCCTGTTTGA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16415328 215 + 178775436 GGTAATCAAGCATTGGCCTAACTCTGATGTGGCAAAGTAGGGTTATCTAGAAAGGAAAAATTCTGTCAAAATTATcgtatttattttctgtttacatAATCGAGTAG-AGGCCCCGCACATCATGGAAagtcaaatatttattcatctgATTATGACATGA-TTTTAAATTCCGTTGTGTTTGCTTTATGATATATACTCCTGTCGCTCCTGTTTGA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19899322 215 - 48547382 GGTAATCAAGCATTGGCCTAACTCTGATGTGGCAAAGTAGGGTTGTCTAGAAAGGAAAAATTCTGTCAAAATTATCGTATTTATTTTCTGTTTACATAATTGAGTAG-AGGCCCCGCACATCATGGAAAGTCAAATATTTATTCATCTGATTATGACATGA-TTTTAAATTCCGTTGTGTTTGCTTCATGATGTATACTCCTGTCACTCCTGTTTGA i chlSab2.chr27 C 0 I 93 s calJac3.chr3 21257146 215 - 190850796 GGTAATCAAGCATTGGCCTAACTCTGCAGTGGCAAAGTAGGGTTGTCTAGAGAGAAAAAATTCTGTCAAATGTATTGTATTTATTTTCTGTTCACATCATTGATTAGAAGGCCCCACACAACATAGAAAGTCAAATATTTATTTATTTGACTATGGTGTGA-TTTTAGATTCCCTTGTGTTTACTTTATGATATATACTCTTGTC-CTCCTGTTTGA i calJac3.chr3 C 0 C 0 s canFam3.chr3 3832412 188 - 91889043 GGTAATCATGCATTGTCCTAACTGAGCAGTAGCAAAGTAAGCCCATCTAGAAATGGGAAATT---GCATACATACCACATTTATTTTCC-------------------AGG-----CACATCACAGTAAGTCAAATATTTATTCATTAGGTTATGCTGTGA-TTTTAAATTCCCTTGTGTTTCTTCAATGACATATACTTCCTTC-CTCCTGATTAA i canFam3.chr3 I 142 C 0 e mm10.chr5 49239283 1730 + 151834684 I a score=8971.000000 s hg38.chr4_KI270790v1_alt 134767 6 + 220246 ACATTT s panTro4.chr4 21521119 6 + 193495092 ACATTT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21698595 6 + 198332218 ACATTT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20310460 6 - 85365473 ACATTT i nomLeu3.chr20 C 0 C 0 s macFas5.chr5 20825620 6 + 189454096 TCAATT i macFas5.chr5 C 0 I 87 s papAnu2.chr5 16415543 6 + 178775436 Tcaatt i papAnu2.chr5 C 0 I 87 s calJac3.chr3 21257361 6 - 190850796 CCATTT i calJac3.chr3 C 0 C 0 s canFam3.chr3 3832600 6 - 91889043 ACACTT i canFam3.chr3 C 0 C 0 e mm10.chr5 49239283 1730 + 151834684 I e chlSab2.chr27 19899537 93 - 48547382 I e rheMac3.chr5 16775682 93 + 184069350 I a score=309688.000000 s hg38.chr4_KI270790v1_alt 134773 293 + 220246 TATGGAATGTCAGTTTGGTTATAATTAATATACTCTAGCTCGTGTTCAGTATCGAGTCTATAATGACTTAACATTCTCAATCAATTT-AGTGGAAGAT----AAAG-ACAGGATGTTGAAGTTCCCCTCATTC----CCTGACATTATAGCTTACATTGAATGCTGAAGTACTTTTGTTTCTAGATGACCAGTT------ACTTATAGTTATTTTGGATTGGTCATTAGGTATATTGGAGAAATCACTGTTAAAA---CTGTACTGGAATGGCCTAGAGGAAAAGCATCAGAAGAGAAAGATAATTAAAAGG- s panTro4.chr4 21521125 293 + 193495092 TATGGAATGTCAGTTTGGTTATAATTAATATACTGTAGCTCGTGTTCAGTATCGAGTCTATAATGACTTAACATTCTCAATCAATTT-AGTGGAAGAT----AAAG-ACAGGATGTTGAAGTTCCCCTCATTC----CCTGACATTATAGCTTACATTGAATGCTGAAGTACTTTTGTTTCTAGATGACCAGTT------ACTTATAGTTATTTCGGATTGGTCATTGGGTATATTGGAGAAATCACTGTTAAAA---CTGTACTGGAATGGCCTAGAGGAAAAGCATCAGAAGAGAAAGATAATTAAAAGG- i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21698601 299 + 198332218 TATGGAATGTCAGTTTGGTTATAATTAATATACACTAACTCGTGTTCAGTATCGAGTCTATAATGACTTAACATTCTCAATCAATTT-AGTGGAAGAT----AAAG-ACAGGATGTTGAAGTTCCCCTCATTC----CCTGACATTATAGCTTACATTGAATGCTGAAGTACTTTTGTTTCTAGATGACCAGTTACTTTAACTTATAGTTATTTCGGATTAGTCGTTAGGTATATTGGAGAAATCACTGTTAAAA---CTGTACTGGAATGGCCTAGAGGAAAAGCATCAGAAGAGAAAGATCATTAAAAGA- i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20310466 299 - 85365473 TATGGAATGTTAGTTTGGTTATTATTGATATACTCTAGCTTGTGTTCAGTATCGAGTCTATAATGACTTAACATTCTCAATCAATTT-AGTGGAAGAT----AAAG-ACAAGATGTTGAAGTTCCCTTCATTC----CCCGACATTATAGCTTACATTGAATGCTGAAGTACTTTTGTTTCTAGATGACCAGTTACTTTAACTTATAGTTATTTCTGATTGGTCATTAGGTATATTGGAGAAATCACTGTTAAAA---CTGTACTGGAATGGCCTAGAGGAAAAGCATCGGAAGAGAAAGATCATTAAAAGG- i nomLeu3.chr20 C 0 I 308 s calJac3.chr3 21257367 302 - 190850796 CATGAAATGTTCATCTGGTTATAATTAATGTACTCTAGCTTGTGTTCAGTGTTGACTCTATAATGCCTTAACATTCTCAATCAATTT-AATAGAAGATAAAGAAAG-ACAGGACATTAAAGTTCCCCTCCTTC----CTCGACATTATAGCTTACAATGAATGCTGAAGTACTTTTGTTTCGAGATGACCAGGTACTTTAACTTATACTTATTTCTGATTGGCCATTA-GTATATTGGGGAAATCAATGTTAAAA---CTGTACCAGAATGGCCTAGAAGAAAAGCATCAGAAGAGAAAGATCATTAAAAGG- i calJac3.chr3 C 0 C 0 s canFam3.chr3 3832606 304 - 91889043 TATGGAATGCTACTTTCATTGTAATTAATATACTCTAGCTTTTGTTCAGTATTGACTTGATAATGGTTTAACATTCTCAATCAATTTCAATGCAAGAT----AAAGAATAGAAGGTTGAAGCCTCCCTCCTGCCCCTCCTGGCTGTATGTCTTACACTTAAGACTGAAGCACTTTAGCTTGTAGGTGATCAGTT-CTCTAACTCACATTTATTTTTGAATGGCCATTGGGTATATTGGGCAAATAATTGTCAACAGGTCTGT----GAATGACCTGGAGGAAAAGCATTAGAAAAGAAAGATCATACAAAGGA i canFam3.chr3 C 0 C 0 e mm10.chr5 49239283 1730 + 151834684 I e chlSab2.chr27 19899537 93 - 48547382 I e macFas5.chr5 20825626 87 + 189454096 I e rheMac3.chr5 16775682 93 + 184069350 I e papAnu2.chr5 16415549 87 + 178775436 I a score=223586.000000 s hg38.chr4_KI270790v1_alt 135066 222 + 220246 TATTATTACCATCATC-TTTATACAGTGCTAATTTTTAACAATCATTTTTACAGTCATGTGAATGACAAGTAGATGCTATCCAGAATTCCCATCATTGGAGCCTGTATTTCATTG-AATTAACACTCAACAAAAACATGCTAAGTGTCTCTTAAC---------ATTATACTACATACTGATGCTATAAGAAAGAGATAAAAATGAGAAGGATATGTAAGACAGTATGGCAAT s panTro4.chr4 21521418 222 + 193495092 TATTATTACCATCATC-TTTATACAGAGCTAATTTTTAACAATAATTTTTACAGTCATGTGAATGACAAGTAGATGCTATCTAGCATTCCCATCATTGGAGCCTGTATTTCATTG-AATTAACACTCAACAAAAACATGCTAAGTGTCTCTTAAC---------ATTACACTACATACTGATGCTATAAGAAAGAGATAAAAATGAGAAGGATATGTAAGACAGTATGGCAAT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21698900 222 + 198332218 TATTATTACCATCATC-TTTATACAGAGCTAATTTTTAACAATCATTTTTACAGTCATGTGAATGATAAGTAGATGCTATCTAGAATTCCCAACATTGGAGCCCGTATTTCATTG-AATTAACACTCAACAAAAACATGCTAAGTGTCTCTTAAC---------ATTACACTACATACTGATGCTATAAGAAAGAGACAAAAACGAGAAGGATATGTAAGGCAGTATGGCAAC i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20311073 222 - 85365473 TATTATTACCATCGTC-TTTATACAGAGCTAATTTTTAACAATCATTTTTACAGTCATGTGAATAACCAGTAGATGCTATCTAGAATTCCCATCATTGGAGCCTGTATTTCATTG-AATTAACACTCAACAAAAACATGCTAAGTGTCTCTTAAT---------ATTATACTACATACTGATGCTATAAGAAAGAGATAAAAATGAGAAGGATATGTAACACAGTATGGCAAT i nomLeu3.chr20 I 308 C 0 s calJac3.chr3 21257669 220 - 190850796 TATTATTACCATCATT-TTTATACAGAGCTAATTTTTAACAATGATTTTTACAGACCTGTGAGTGACAAGTAGATGCTAACTAGAATTCCCATGTTTGGAGTCCAGATTTCATTG-AATTAACACTCAAC--AAATATGCTAAATGTCTCGTAAC---------ATTATACTACATACTGATGCTATAAGAAAGAGATAAAAATGAGAAGGACCTGTAACATACTATGACAAC i calJac3.chr3 C 0 C 0 s canFam3.chr3 3832910 232 - 91889043 TATTAGTACCTTAGCCACATGCACGGTGCTAATTTTTTACTATCTTTTTTATAGTTATGTGAGTGATAAGTAGGTAGTATGTACAACTGTCAT-ATTGGAGCCAAAATTTAATAGAAATTTACACTCAACATAAATATGCTAAGTGCCTACAAGCATTCAGCCTATTATACTATGTACTGAGAACATGAGGAAGAGATGAAAATCAGAAAGAAATATCACAAAGTGTGACAAC i canFam3.chr3 C 0 C 0 e mm10.chr5 49239283 1730 + 151834684 I e chlSab2.chr27 19899537 93 - 48547382 I e macFas5.chr5 20825626 87 + 189454096 I e rheMac3.chr5 16775682 93 + 184069350 I e papAnu2.chr5 16415549 87 + 178775436 I a score=71939.000000 s hg38.chr4_KI270790v1_alt 135288 61 + 220246 TG-AAAATAA-ATATGTTCAAAATAAGTACCTCTCTTGGGTGGTAAAGGGATAATAGGAAgaa s panTro4.chr4 21521640 61 + 193495092 TG-AAAATAA-ATATGTTCAAAGTAAGTACCTCTCCTGGGTGGTAAAGGGATAATAGGAAgaa i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21699122 61 + 198332218 TG-AAAATAA-ATATGTTCAAAATAAGTACCTCTCTTGGGTGGTAAAGGGATAATAGGAAgaa i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20311295 61 - 85365473 TG-AAAATAA-ATATGTTCAAAATAAGCACCTCTCTTGGGTGGTAAAGGGATAATAGGAAGAA i nomLeu3.chr20 C 0 C 0 s calJac3.chr3 21257889 62 - 190850796 TGCAAAATAA-ATATGTTCAAAATAAGCACTTCTCTTGGGTGGTAAAGGAATAATAGAAAGAA i calJac3.chr3 C 0 I 316 s mm10.chr5 49241013 56 + 151834684 ta-aaaataa-aCTATTAAAAAAGAAG-----CTCTTTAGTGATAAAGGAATCATACAACAAG i mm10.chr5 I 1730 C 0 s canFam3.chr3 3833142 62 - 91889043 TGCAATATAATATATGTTCAAAGT-AGTATCTGTCTTGTGAGGTAAAAGAATCATGGAAAGAA i canFam3.chr3 C 0 C 0 e chlSab2.chr27 19899537 93 - 48547382 I e macFas5.chr5 20825626 87 + 189454096 I e rheMac3.chr5 16775682 93 + 184069350 I e papAnu2.chr5 16415549 87 + 178775436 I a score=85888.000000 s hg38.chr4_KI270790v1_alt 135349 94 + 220246 tgggatgtcttatggagtagttagttcc-ctacatctagggtgttttcaagcaTG---------------------TGATCCA---------------------TAGTGAAACA--------------------GGCCTTAAAAAGTCCCCTGTAGG s panTro4.chr4 21521701 94 + 193495092 tgggatgtcttatggagtagttagttcc-ctacatctagggtgttttcaagcaTG---------------------TGATCCA---------------------TAGTGAAACA--------------------GGCCTTAAAAAGTCCCCTGTAGG i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21699183 94 + 198332218 tgggatgtcttatggagtagttagttcc-ctacatctagggtgttttcaagcaTG---------------------TGATCCA---------------------TAGTGAAACA--------------------GGGCTTAAAAAGTCCCCTGTAGG i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20311356 112 - 85365473 TGCGATGTCTTATAGAGTAGTTAGTTCC-CTACATCTAGGGTGTTTTCAAGCATGTGCTAC---AGGACTGTTTCCTGATCCA---------------------TAGTGAAACA--------------------GGCCTTAAAAAGTACCCTGTAGG i nomLeu3.chr20 C 0 C 0 s calJac3.chr3 21258267 112 - 190850796 TGGAATGTCTCATAGAGTAGTTAGTTCCTCTACCTCCAGGGTATTTTCCAGCGTG---TGCTA-TGGACTGTTTCCTGGTCCA---------------------TAGTGAAACA--------------------GGCCTTAAAAAGTCCCTTCTAGG i calJac3.chr3 I 316 C 0 s mm10.chr5 49241069 130 + 151834684 TAGAATGGTTTATGAAATAG-TGCTTTC-CCACATCATAATTGTACTCAAGAATA---TGCTT-AGGGACATTTCCTTGTCCATCTTAGGCATGGGAAAATATTTATTGTAAGA--------------------GTCTTTAAAAA-TCCCTAATAGA i mm10.chr5 C 0 I 2 s canFam3.chr3 3833204 129 - 91889043 TGAAATGTCATATAAGCTAGT---TTCC-CTACATCCAAGATGTTTTCAATCACA---TGTTACAGGACTGTTTCCTTATCAA---------------------TAACGCAAAAGGGAATCCCCACACTGTTTGGGCCTTAACAATTCCTTCCCAGG i canFam3.chr3 C 0 C 0 e chlSab2.chr27 19899537 93 - 48547382 I e macFas5.chr5 20825626 87 + 189454096 I e rheMac3.chr5 16775682 93 + 184069350 I e papAnu2.chr5 16415549 87 + 178775436 I a score=356429.000000 s hg38.chr4_KI270790v1_alt 135443 111 + 220246 GTAATAATTTGTAATTATTTATTGGCTATTTATGTCT-------------------------------------------------TGTTCCTTTTATCCTCT---TCACGGCTCCTTTTGCAAATGCCTGTATTTCTGTGTAGTTAAGATAAAGATAGCACT s panTro4.chr4 21521795 111 + 193495092 GTAATAATTTGTAATTATTTATTGGCTATTTATGTCT-------------------------------------------------TGTTCCTTTTATCCTCT---TCACGGCTCCTATTGCAAATGCCTGTATTTCTGTGTCGTTAAGATAAAGATAGCACT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21699277 111 + 198332218 GTAATAATTTGTAATTATTTATTGGCTATTTATGTCT-------------------------------------------------TGTTTCTTTTATCCTCT---TCACGGCCCCTTTTGCAAATGCCTGTATTTCTGTGTAGTTAAGATAAAGATAGCACT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20311468 111 - 85365473 GTAATAATTTGTAATTATTTATTGGCTATTTATGTCT-------------------------------------------------TCTTCCTTTTATCCTCT---TCACGGCCCCTTTTGCAAATGCCTGTATTTCTGTGTAGTTAAGATAAAGATAGCACt i nomLeu3.chr20 C 0 I 293 s rheMac3.chr5 16775775 111 + 184069350 GTAAGAATTTGTAATTATTTATTGGCTATTTATGTCT-------------------------------------------------TGTTCCTTTTATCCTCT---TCACGGCCTGTTTTGCAAATGCCTGTATTTCTGTGTAGTTAAGATAAAGATAGCACT i rheMac3.chr5 I 93 C 0 s macFas5.chr5 20825713 111 + 189454096 GTAAGAATTTGTAATTATTTATTGGCTATTTATGTCT-------------------------------------------------TGTTCCTTTTATCCTCT---TCACGGCCTGTTTTGCAAATGCCTGTATTTCTGTGTAGTTAAGATAAAGATAGCACT i macFas5.chr5 I 87 C 0 s papAnu2.chr5 16415636 111 + 178775436 gtaagaatttgtaattatttattagcTATTTATGTCT-------------------------------------------------TGTTTCTTTTATCCTCT---TCACAGCCTGTTTTACAAATGCCTGTATTTCTGTGTAGTTAAGATAAAGATAGCACT i papAnu2.chr5 I 87 C 0 s chlSab2.chr27 19899630 111 - 48547382 GTAAGAATTTGTAATTATTTATTGGTTATTTATGTCT-------------------------------------------------TGTTCCTTTTATCCTCT---TCATGGCCTGTTTTGCAAATGCCTGTATTTCTGTGTCGTTAAGATAAAGATAGCACT i chlSab2.chr27 I 93 C 0 s calJac3.chr3 21258379 105 - 190850796 GTAAGAATTTGTAATTACTTATCAGCTATTTATGTCT-------------------------------------------------TCTTCCTTTTATCCCTT---TCACGGCTCCTTTTGCAAATGCTTGTATTTCTGTCTAGTT------AAGATAGCACT i calJac3.chr3 C 0 C 0 s mm10.chr5 49241201 155 + 151834684 GAAATAAT---TGCTCATCTATTGGATATTTATACctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctccctctctctctcATCATTTTTTGCATCTTGC-ATACTTCTCTGTGGCTAGAAAGAAGACAG---- i mm10.chr5 I 2 C 0 s canFam3.chr3 3833333 94 - 91889043 CTAAGATTTTATGATTACTTATCAACTATTTTTGTGG---------------------------------------------------------------------TCACAGGACCTTGTGGAAATGCCTCTGTTTTTCTGCAGGTAAGATAAAGATAGTCCT i canFam3.chr3 C 0 C 0 a score=8210079.000000 s hg38.chr4_KI270790v1_alt 135554 2272 + 220246 TTTTAACTTGAAGCCTTGCAAAGTGACATTTT-CTCCAAATGCACTTGGTGAA-TTTTTTTATACAACTCTAAACTA--GA--GCTGAATCAACTGTAGGGAATGTGCTGAATGTCCATCCATAAAGGGAAACAAGATTAATGACCTCTAAGTGTGAATGGGCAAAAGCAATTTACAAGAGTGAGTGAGGGTCATATTTTATCACAGGCAGGTGGCTTATTCCAACTTTGCAAACAGTTACCAAAAATGCACACAACCACAAATCTTTGGCCTTTCCATCCTCACGTGAAACCATTGTGTGTGCCAGACAAATGAT-CCTACTAT----GTTTTAACCCCAAACTCAATCTGCATATGTTAATGAAGACT-AAAATAGATTGCTAGAAAACTCCTTGAAGCAGAAACTAACAGAAAAAGCATTTTCCTTCCCAACCCACTCCACAGGATCTGTACTTCACCCAGCAAGAAAAGGAGCATGAAATTTTGCTTCTCACTATGTGGAAAACCCTTAA-TGCATGTTCTGCTAATTTTGGAATTT-AAAAATTTTCTTTCACCTTGGACTTTGTCCTTGTTCCAGTGAACTGTGACTTCAAATCAGTATATCATA-------------------------------------TG---GTGTTTGTTTTTATGT-------------------------------------------------------------TTTTGGTAGTCATAGTAGGGGGTGTTAGAAGGTATGTAATATGGGAGGACAC-TGGTAAAATCTTTCTAGTACAAATCATAAAATAACAAAAATAAAAACACTTGTTCCAATGATATTGGAT--CTCTATTCTTCTCCTTGAGGTTTATG-CCTCTAGCATAATTTGGGCACAGCCCACTCTAGTACTCTCTAAATAACCTGTGCAAGTTATTATACTTCTGCATATCTGAGGTCAGGAAAGAGGGGTCAGACATTTGGAACAACCAAAGGATATTAGACCTAGTAATAAAATAGAGAGCCAAAGGAtattagctgtctactgctgcataaaattttacctaaaacttagtatcttaaaacaacatgaatttattatcactcagtttctgcgcatcacaactc---cagacatgaaataactaggctctcttgattacgatttcacaaggtcaaagttatgatgtcagccaggcttcatttccatctggagtttgggggtcctctgaaaagctctcgtggttgtagcagaatttagttctttgcaattgtaagac-aag-atgcctatt-cttt---gctggttgtcagcatggggcca--ctcagctccttgaggccacccacagttctttgccatatg--gtcttctccatctttaaaagtgagcaatagtgactctcct----gctgaatccctttcagatttcaaatctctgttaccataaagagccttgccct------------------------------------------------------------tttaagggctagcttgtgtagatcaggcccactgaacatgatctcctttctttaagtaaactgtgccaaataacacaatctaattatgagag-------tggtatt--atggcattgcatcacaag--cacaggtctttctcacagtcaaagggaggatattctacaagagcatggttcattg--------gggcttattttataattctgtctaccacaTAA-TTCTTGAAGGGAGTATCATAAAGCCAAGGCCTGAGGCAAGGCAAGTAAGCTGCTATCTTCAGGAGGGCTGGACAGAGAAGGCAAGGAGAGGGCATAACAGGAAATATGGATGTTCACATGAGTG---ATGACTGCCATCTAATGAAGATTAGGGATAAAGA--GGATATTTTGTCCAAGAAATGGCATTGTTAA---TACTCCATCTCACAACTGTTTAGAGAAATGGGAATAATTTTGTTAACTGCAATTTACCACTTCCTAATGGAAAATATTCTAGCACAGTGAC-CTTGTGTGCAATTGGGTGACCAAGCTGATGTCTACCAACCCTGGGTAAAGCCAA-TTATGAAATATGATGAATGCTGAATGACTCA--AAAGGGCTTTACATAATTAGCAAGAGCCAAAGAAA-------CTAATGAATTCTTTTacaagaacaaaaca-taacagcaacaaaacaaataaatgaaaacaGGATGTCCTTAGAATCCTCAATATAGGTTGCAAGTT--GAAgactttgatggcaga--------ctttcaggattcaaatcctaactttctaacttactaagtatttgaactcaggtaagttattgaacttcATTTta-----------------tgtatatagagctacagatatatacatctatgta----------tatatatagcta----------tgtaatacagatatacatataaaatgtatatataATTTGGACA---------AATACCAGAAAAGTAGTTTGTATATAATACAAA-----GTCATTATT---ACTAGTTGTTTATAGTCC s panTro4.chr4 21521906 2276 + 193495092 TTTTAACTTGAAGCCTTGCAAAGTGACATTTTTCTCCAAACGCACTGGGTGAA-TTTTTTTATACAACTCTAAACTA--GA--GCTGAATCAACTGTAGGGAATGTGCTGAATGTCCATCCATAAAGGGAAACAAGATTAATGACCTCTAAGTGTGAATGGGCAAAAGCAATTTACAAGAGTGAGTGAGGGTCATATTTTATCACAGGCAGGTGTCTTATTCCAACTTTGCAAACAGTTACCAAAAATGCACACAATCACAAATCTTTGGCCTTTCCATCCTCATGTGAAACCATTGTGTGTGCCAGACAAATGAT-CCTACTAT----GGTTTAACCCCAAACTCAATCTTTATATGTTAATGAAGACT-AAAATAGATTGCTAGAAAACTCCTTGAAGCAGAAACTAACAGAAAAAGCATTTTCCTTCCCAACCCACTCCACAGGATCAGTACTTCACCCAGCAAGAAAAGGAGCATCAAATTTTGCTTCTCACTATGTGGAAAACCCTTAA-TGCATGGTCTGCTAATTTTGGAATTT-AAAAATTTTCTTTCACCTTGGACTTTGTCCTTGTTCCAGTGAATTGTGACTTCAAATCAGTATATCATA-------------------------------------TG---GTGTTTGTTTTTATGT-------------------------------------------------------------TTTTGGTAGTCATAGTAGGGGGTGTTAGAAGGTATGTAATATGGGAGGACAC-TGGTAAAATCTTTCTAGTACAAATCATAAAATAACAAAAATAAAAACACTTGTTCCAATGATATTGGAT--CTCTATTCTTCACCTTGAGGTTTATG-CCTCTAGCATAATTTGGGCACAGCCCACTCTAGTACTCTCTAAATAACCTGTGCAAGTGATTATACTTCTGCATATCTGAGGTCAGGAAAGAGGGGTCAGACATTTGGAACAACCAAAGGATATTAGACCTAGTAATAAAATAGAGAGCCAAAGGAtattagctgcctactgctgcataaaattttacctaaaacttagtatcttaaaacaacatgaatttattatcactcagtttctgcgcatcacaactc---cagacgtgaaataactaggctctcttgattacgatttcacaaggtcaaagttatgatgtcagccaggcttcatttccatctggagtttgggcgtcctcttaaaagctctcgtggttgtagcagaatttagttctttgcaattgtaagac-aag-atgcctatt-cttt---gctggttgtcagcatggggcca--ctcagctccttgaggccacccacagttctttgccacatg--gtcttctccatctttaaaagtgagcagtggtgactctcct-tctgctgaatccctttcagattccaaatctctgttaccataaagagccttgccct------------------------------------------------------------tttaagggctagctcgtgtagatcaggcccactgaacatgatctcctttctttaagtaaactgtgccaaataacacaatctaattatgagag-------tggtatc--atggcattgcatcacaag--cacaggtctttctcacagtcaaagggaggatattctacaagagcatggttcattg--------gggcttattttataattctgtctaccacaTAA-TTCTTGAAGGGAGTATCATAAAGCCAAGGCCTGAGGCAAGGCAAGTAAGCTGCTATCTTCAGGAGGGCTGGACAGAGAAGGCAAGGAGAGGGCATAACAGGAAATATGGATGTTCACATGAGTG---ATGACTGCCATCTAATGAAGATTAGGGATAAAGA--GGATATTTTGTCCAAGAAATGGCATTGTTAA---TACTCCATCTCACAACTGTTTAGAGAAATGGGAATAATTTTGTTAACTGCAATTTACCACTTCCTAATGGAAAATATTCTAGCACAGTGAC-CTTGTGTGCAATTGGGTGACCAAGCTGATGTCTACCTACCCTGGGTAAAGCCAA-TTATGAAATATGATGAATGCTGAATGACTCA--AAAGGGCTTTACATAATTAGCAAGAGCCAAAGAAA-------CTAATGGATTCTTATACAAGAACAAAACA-TAACAGCAACAAAACAAATAAATGAAAACAGAATGTCCTTAGAACCCTCAATATAGGTTGCAAGTT--GAAgactttgatggcaga--------ctttcaggattcaaatcctaactttctaacttactaaatatttgaactcaggtaagttattgaacttcATTTTA-----------------TGTGTATAGAGCTACAGatatatacatctatgta----------tatatatagcta----------tgtaatacagatatacatataaaatgtatatataATTTGGACA---------AATACCAGAAAAGTAGTTAGTATATAATACAAA-----GTCATTATT---ACTAGTTGTTTATAGTCC i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21699388 2274 + 198332218 TTTTAACTTGAAGCCTTGCAAAGTGACATTTTTCTCCAAATGCACTTAGTGAA-TTTTTTTATACAACTCTAAACTA--GA--GCTGAATCAACTGTAGGGAATGTGCTGAATGTCCATCCATAAAGGAAAACAAGATTAATGATCTCTAAGTGTGAATGGGCAAAAGCAATTTACAAGAGTGAGTGAGGGTCATATTTTATCACAGGCAGGTGGCTTATTCCAACTTTGCAAACAGTTACCAAAAATGCACACAACCACAAATCTTTGGTCTTTCCATCCTCATGTGAAACCATTGTGTGTGCCAGACAAATGAT-CCTACTAT----GTTTTAACCCCAAACTCAATCTTTATATGTTAATGAAGACT-AAAATAGATTGCTAGAAAACTCCTTGAAGTAGAAACTAACAGAAAAAGCATTTTCCTTCCCAACCCACTCCACAGGATCTGTACTTCACCCAGCAAGAAAAGGAGCATCAAATTTTGCTTCTCACTATGTGGAAAACCCTTAA-TGCATGGTCTGCTAATTTTGGAATTT-AAAAATTTTTTTTCACCTTGGACTTTGTCCTTGTTCCAATGAATTGTGACTTTAAATCAGTATATCATA-------------------------------------TG---GTGTTTGTTTTTATGT-------------------------------------------------------------TTTTGGTAGTCATAATAGGGGGTGTTAGAAGGTATGTAATACGGGAGGACAC-TGGTAAAATCTTTCTAGTACAAATCATAAAATAACAAAAATAAAAACACTTGTTCCAATGATACTGGAT--CTCTATTCTTCACCTTGAGGTTTATG-CCTCTAGCATAATTTGGGCACAGCCCACTCTAGTACTCTCTAAATAACCTGTGCAAGTTATTATACTTCTGCATATCTGAGGTCAGGAAAGAGGGGTCAGACATTTGGAACAACCAAAGGATATTAGACCTAGTAATAAAATGGACAGCCAAAAGAtattagctgtctactgctgcataaaattttacctaaaacttagtatcttaaaacaacatgaatttattatcactcagtttctgtgcgtcacagctc---cagacatgaaataactaggctctcttgattatgatttcacaaggtcaaaattatgatgtcagccaggcttcatttccatctggagtttgggggtcctcttaaaatctctcgtggttgtagcagaatttagttctttgcaattgtaagac-aag-atgcctatt-tttt---gctggttgtcagcatggggcca--ctcagctccttgaggccacccacagttctttgccatatg--gtcttctccatctttaaaagtgagcaatggtgactctcct-tctgctgaatccctttcagatttcaaatctctgttaccataaagagccttgccct------------------------------------------------------------tttaagggctagcttgtgtagatcaggcccactgaacatgatctcctttctttaagtaaactgtgccaaata--acaatctaattatgagag-------tggtatc--atggcattgcatcacaag--cacaggtctttctcacagtcaaagggaggatattctacaagagcatgggtcattg--------gggcttattttataattctgtctaccacaTAA-TTCTTGAAGGGAGTATCATAAAGCCAAGGCCTGAGGCAAGGCAAGTAAGCTGTTATCTTCAGGAGGGCTGGACAGAGAAGGCAAGGAGAGGGCATAACAGGAAATATGGATGTTCGCATGAGTG---ATGACTGCCATCTAATGAAGATTAGGGATAAAGA--GGATATTTTGTCCAAGAAATGGCATTGTTAA---TACTCCATCTCACAACCGTTTAGAGAAATGGGAATAATTTTGTTAACTGCAATTTACCTCTTCCTAATGGAAAATATTCTAGCACAGTGAC-CTTGTGTGCAATTGGGTGACCAAGCTGATGTCTACCTACCCTGGGTAAAGCCAA-TTAGGAAATATGATGAATGCTGAATGACTCA--AAAGGGCTTTACATAATTGGCAAGAGCCAAAGAAA-------TGAATGAATTCTTTTACAAGAACAAAACA-TAACAGCAACAAAACAAATAAATGAAAACAGGATGTCCTTAGAATCCTCAATATAGGTTGCAAATT--GAAgactttgatggcaga--------ctttcaggattcaaatcctaactttctaacttactaaatatttgaccttgggtaagttattgaacttcATTTta-----------------tgtgtatagagctacagatatatacatctatgta----------tatatatagcta----------tgtaatacagatatgcatataaaatgtatatataATTTGGACA---------AATGCCAGAAAAGTAGTTAGTATACAATACAAA-----GTCATTATT---ACTAGTTGTTTATAGTCC i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20311872 2262 - 85365473 tTTTAACTTGAAGCCTTGCAAAGTGACATTTTTCTCCAAATGCACTTGGTGAA--TTTTTTATACAACTCTAAGCTA--GA--ACTGAATCAACTGTAGGGAATGTGCTGAATGTCCATCCATAAAGGGAAACAAGATTAATGACCTCTAAGTGTGAATGGACAAAAGCAATTTACAAGAGTGAGTGAGGGTCATATTTTATCACAGGCAGGTGGCTTATTCCAACTTTGCAAACAGTTACCAAAAATGCACACAACCACAAATCTTTGGCCTTTCCATCCCCATGTGAAACCATTGTGTGTGCCAGACGAATGAT-CCTACTAT----GTTTTAACCCCAGACTCAATCTTTATATGTTAATGAAGACT-AAAATAGATTGCTAGAAAACTCCTTGAAGCAGAAACTAACAGAAAAAGCATTTTCCTTCCCAACCCACTCCACAGGATCTGTACTTCACCCAGCAAGAAAAGGAGCATCAAATTTTGCTTCTCACTATGTGGAAAACCCTTAA-TGCATGGTCTGCTAATTTTGGAATTT-AAAAATTTTCTTTCACCTTGGACTTTGTCCTTGTTCCAATGAATTGTGACTTCAAATCAGTATATCATA-------------------------------------TG---GCGTTTGTTTTTCTGT-------------------------------------------------------------TTTTCGTAGTCATAGTAGGGGATGTTAGAAGGTATGTAATATGGGAGGACAC-TGGTAAAATCTTTCTAGTACAAATCATAAAATAACAAAAATAAAAACACTTGT-------------------TCTATTCTTCACCTTGAGGTTTATG-CCTCTAGCATAGTTTGGGCACAGCCCACTCTAGTACTCTCTACATAACCTGTGCAAGTTATTATACTTCTGCATATCTGAGGTCAGGAAAGTGGGGTCAGACATTTGGAATAGCCAAAGGATATTAGACACAGTAATAAAATAGACAGCCAAAGGAtattagctgtctactgctgcataaaattttacctaaaatttagtatcttaaaacaacatgaatttattatcactcagtttctgtgtgtcacaactc---cagacatgaaataacgaggctctc-tgattatgatttcacaaggtcaaaattatgatgtcagccaggcttcatttccatctggagtttgggggtcctcttaaaagctcacgtggttgtagcagaatttagttctttgcaattgtaagac-aag-atgcctatt-cttc---gctggttgtcagcatggggcca--ctcagctccttgaggccacccacagttctttgccatatg--ttcttttccatccttaaaagtgagcaatggagactctcct-tctgctgaatccctttcagattgcgaatctctgttaccataaagagccttgccct------------------------------------------------------------ttgaagagctagcttgtgtagatcaggcccactgaacacgatctcctttctttaagtaaactgtgccaaataacacaatctaattatgagag-------tggtatc--atggcactgcatcataag--cacaggtctttctcacagtcaaagggaggatattctacaagagcatgggtcattg--------ggtcttattttataattctgtctaccacaTAA-TTCTTGAAGCAAGTATCATAAAGCCAAGGCCTGAGGCAAGGCAAGTAAGCTGTTATCTTCAGGAGGGCTGGACAGAGAAGGCAAGGAGAGGGCATAACAGGAAATATGGATGTTCACATGAGTG---ATGACTGCCATCTAATGAAGATTAGGGATAAAGA--GGATATTTTGTCCAAGAAATGGCACTGTTAA---TACTCCATCTCACAACTGTTTAGAGAAATGGGAATAATTTTGTTAACTGCAATTTACCACTTCCTAATGGAAAATATTCTAGCACAGTGAC-CTTCTGTGCAATTGGGTGACCAAGCTGATGTCTACCTACCCTGGGTAAAGCCAATTTACGAAATACGATGAATGCTGAATGACTCA--AAAGGGTTTTACATAATTGGGGACAGCCAAAGAAA-------CTAATGAATTCTTTTACAAAAACAAAACATTAATAGCAACAATACAAATAAATAAAAACAGGATGTCCTTGGTATCCTCAATATAGGTTGCAAATT--GAAGTctttgatggcaga--------ctttcaagattcaaatcctaactttctaacttactaaatatttgacctcaggtaagttattgaacttcATTTTA-----------------TGTGtacagagctacaaatatatacatctatata----------tatacatagcta----------tgtaatacagatatacatataaaatgtatatataATTTGGACA---------AATGCCGGAAAAGTAGTTAGTATACAATACAAA-----GTCATTATTACCACTAGTTGTTTATAATCC i nomLeu3.chr20 I 293 C 0 s rheMac3.chr5 16775886 2279 + 184069350 TTTTAACTTGAAGCCTTGCAAAGTGACATTTTTCTCCAAATGCACTTGGTGAA--TTTTGTATACATCTCTAAACTA--GA--GCTGAATCAACTGTAGGGAATGTGCTGAATGTCCATCCATAAAGGGAAACAAGATTAATGACCTCTAAGTGTGAACGGGCAAAAGCAATTTACAAGAGTGAGTGAGGGTCATATTTTATCACAGGCAGGTGGCTTATTCCAACTTTGCAAACAGTTACCAAAAATGCACACAACCACAAATCTTTGGCCTTTCCATCCCCATGTGGAACCATTGTGTGTGCTAGACAAATGAT-CCTACTAT----GTTTTAACCCCAAACTCAATCTTTATATGTTAATGAAGACT-AAAATAGATTGCTAGAAAACTCACTGAAGCAGAAACTAACAGAAAAAGCATTTTGCTTCCCAACCCACTCCACAGGATCTGTACTTCACCCAGCAAGAAAAGGAGCATCAAATTTTGCTTCTCACTATGTGGAAAACCCTTAA-TGCATGGTCTGCTAATTTTGGAATTT-AAAAATTTTCTTTCACCTTGGACTTTGTCCTTGTTCCAATGAATTGCAACTTCAAATCAGTATATCATA-------------------------------------TG---GTGTTTGTTTTAATGT-------------------------------------------------------------TTTTGGTAGTCATAGTAGGGGGTGTTAGAAGGTATGTAATATGGGAGGACAC-TGGTAAAATCTTTCTAGTACAAATAATAAAATAACAAAAATAAACACACTTGTTCCTATGATATTGGAT--CCCTATTCTTCACCTTGAGGTTTATG-CCTCTAGCATAGTTTGGGCACAGCCCACTCTAGTACTCTCTACATAACCTGTGCAAGTTATTATACTTTTGCATATCTGAGGTCGGGAAAGAGGGGTCAGATATTTGGAACAGCCAAAGGATATTAGACATAGTAATCAAATAGACAGCCAAAGGAtattagctgtctactgctgcataaaattttaactaaaacttagtatcttaaaacaacatgaatttattatcactcagtttctgtacgtcacagctc---cagacatgaaacaattaggctctc-tgattatgatttcacaaggtcaaaattatgatgtcagccaggcttcatttccatctggaatttggg-gtcctcttaaaagctcacgtggttatagcagaatttagttctttgcaattgtaagac-aag-atgcctatt-cttt---gctggttgtcagcatggggcca--ctcagctccttgaggccacccacagttctttgccatatg--gtcttctccatctttaaaagtgagcaatggagactctcct-tctgctgaatccctttcagatttcaaatctctgttactataaagagccttgccct------------------------------------------------------------tttaagggctatcttgtctaggtcaggcccgctgaacatgatctcatttctttaagtaaactgtgccaaataacacaatctagttatgagag-------tgat---------------atcacaaa--cacaggtctttctcacagtcaaagggaggatattctataagatcatgggccattggggcttatgggcttattttataattctgtctaccacaTAA-TTCTTGAAGGGAGTATCATAAAGCCAAGGCCTGAGGCAAGGCAAGTAAGCTGTTATCTTCAGGAGGGCTGGACAGAGAAGGCAAGGAGAGGGCATAATAGGAAATATGGATGTTCACATGAGTG---ATGACTGCCATCTAATGAAGATATGGGACAAAGA--GGGTATTTTGTCCAAGAAATGGCATTGTTAA---TATTCCATCTCACAACTGTTTAGAGAAACGCGAACAATTTTGCTAACTGCAATTTACCACTTCCTAATGGAAAATATTCTAGCACAGTGAT-CTTCTGTGCAATTGGGTGGCCAAACTGATGTCTGCCTACCCTGGGTAAAGCCAGTTTGTGAAATATGATGAATACTGAATGACTCA--AAAGGGTTTTACATAATTGGCAGAAGCCAAAGAAA------CCTAATGAATTCTTTTACAAAAACAAAACA-TAACAGCAACAAAGCAAATAAATGAAAACAGCATGTCCTTAGAATCCTCAATATAGGTTGCAAATT--GAAggctttgatggcaga--------ctttcaggattcaaatcctaactttctaacttactaaatatttgaccttgggtaagtgattgaacttcATTTta-----------------tgtgtatagatctacagatacatacatctatgtc----tgtgtgcgtgtgtgtata----------tgtaatatagatatacatataaaatgtatatataATTTGGACA---------AATGCTGGAAAAGTAGTTAGTATACAATACAAA-----GTCATTATTACCACTAGTTGTTTATAGTCC i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20825824 2279 + 189454096 TTTTAACTTGAAGCCTTGCAAAGTGACATTTTTCTCCAAATGCACTTGGTGAA--TTTTGTATACATCTCTAAACTA--GA--GCTGAATCAACTGTAGGGAATGTGCTGAATGTCCATCCATAAAGGGAAACAAGATTAATGACCTCTAAGTGTGAATGGGCAAAAGCAATTTACAAGAGTGAGTGAGGGTCATATTTTATCACAGGCAGGTGGCTTATTCCAACTTTGCAAACAGTTACCAAAAATGCACACAACCACAAATCTTTGGCCTTTCCATCCCCATGTGGAACCATTGTGTGTGCTAGACAAATGAT-CCTACTAT----GTTTTAACCCCAAACTCAATCTTTATATGTTAATGAAGACT-AAAATAGATTGCTAGAAAACTCACTGAAGCAGAAACTAACAGAAAAAGCATTTTGCTTCCCAACCCACTCCACAGGATCTGTACTTCACCCAGCAAGAAAAGGAGCATCAAATTTTGCTTCTCACTATGTGGAAAACCCTTAA-TGCATGGTCTGCTAATTTTGGAATTT-AAAAATTTTCTTTCACCTTGGACTTTGTCCTTGTTCCAATGAATTGCAACTTCAAATCAGTATATCATA-------------------------------------TG---GTGTTTGTTTTAATGT-------------------------------------------------------------TTTTGGTAGTCATAGTAGGGGGTGTTAGAAGGTATGTAATATGGGAGGACAC-TGGTAAAATCTTTCTAGTACAAATAATAAAATAACAAAAATAAACACACTTGTTCCTATGATATTGGAT--CCCTATTCTTCACCTTGAGGTTTATG-CCTCTAGCATAGTTTGGGCACAGCCCACTCTAGTACTCTCTACATAACCTGTGCAAGTTATTATACTTTTGCATATCTGAGGTCAGGAAAGAGGGGTCAGATATTTGGAACAGCCAAAGGATATTAGACATAGTAATCAAATAGACAGCCAAAGGAtattagctgtctactgctgcataaaattttaactaaaacttagtatcttaaaacaacatgaatttattatcactcagtttctgtacgtcacagctc---cagacatgaaacaattaggctctc-tgattatgatttcacaaggtcaaaattatgatgtcagccaggcttcatttccatctggaatttggg-gtcctcttaaaagctcacgtggttatagcagaatttagttctttgcaattgtaagac-aag-atgcctatt-cttt---gctggttgtcagcatggggcca--ctcagctccttgaggccacccacagttctttgccatatg--gtcttctccatctttaaaagtgagcaatggagactctcct-tctgctgaatccctttcagatttcaaatctctgttactataaagagccttgccct------------------------------------------------------------tttaagggctatcttgtctaggtcaggcccgctgaacatgatctcatttctttaagtaaactgtgccaaataacacaatctagttatgagag-------tgat---------------atcacaaa--cacaggtctttctcacagtcaaagggaggatattctataagatcatgggccattggggcttatgggcttattttataattctgtctaccacaTAA-TTCTTGAAGGGAGTATCATAAAGCCAAGGCCTGAGGCAAGGCAAGTAAACTGTTATCTTCAGGAGGGCTGGACAGAGAAGGCAAGGAGAGGGCATAATAGGAAATATGGATGTTCACATGAGTG---ATGACTGCCATCTAATGAAGATATGGGACAAAGA--GGGTATTTTGTCCAAGAAATGGCATTGTTAA---TATTCCATCTCACAACTGTTTAGAGAAACGCGAACAATTTTGCTAACTGCAATTTACCACTTCCTAATGGAAAATATTCTAGCACAGTGAT-CTTCTGTGCAATTGGGTGGCCAAACTGATGTCTGCCTACCCTGGGTAAAGCCAGTTTGTGAAATATGATGAATACTGAATGACTCA--AAAGGGTTTTACATAATTGGCAGCAGCCAAAGAAA------CCTAATGAATTCTTTTACAaaaacaaaaca-taacagcagcaaagcaaataaatgaaaacaGCATGTCCTTAGAATCCTCAATATAGGTTGCAATTT--GAAggctttgatggcaga--------ctttcaggattcaaatcctaactttctaacttactaaatatttgaccttgggtaagtgattgaacttcATTTta-----------------tgtgtatagatctacagatacatacatctatgtc----tgtgtgtgtgtgtgtata----------tgtaatatagatatacatataaaatgtatatataATTTGGACA---------AATGCTGGAAAAGTAGTTAGTATACAATACAAA-----GTCATTATTACCACTAGTTGTTTATAGTCC i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16415747 2282 + 178775436 TTTTAACTTGAAGCcttgcaaagtgacatttttcTCCAAATGCACTTGGTGAA--TTTTTTATACGACTCTAAACTA--GA--GCTGAATCAACTGTAGGGAATGTGCTGAATGTCCATCCATAAAGGGAAACAAGATTAATGACCTCTAAGTGTGAATGGGCAAAAGCAATTTACAAGAGTGAGTGAGGGTCATATTTTATCACAGGCAGGTGGCTTATTCCAACTTTGCAAACAGTTACCAAAAATGCACACAACCACAAATCTTTGGCCTTTCCATCCCCATGTGGAACCATTGTGTGTGCTAGACAAATGAT-CCTACTAT----GTTTTAACCCCAAACTCAATCTTTATATGTTAATGAAGACT-AAAATAGATTGCTAGAAAACTCACTGAAGCAGAAActaacagaaaaa-cattttgctTCCCAAACCACTCCACAGGATCTGTACTTCACCCAGCAAGAAAAGGAGCATCAAATTTTCCTTCTCACTATGTGGAAAACCCTTAA-TGCATGGTCTGCtaattttggaattt-aaaaattttctttcaccTTGGACTTTGTCCTTGTTCCAATGAATTGCAACTTCAAATCAGTATATCATa-------------------------------------tg---gtgtttgtttttatgt-------------------------------------------------------------ttttggtagtCATAGTAGGGGGTGTTAGAAGGTATGTAATATGGGAGAACAC-TGGTAAAATCTTTCTAGTACAAatcataaaataacaaaaataaacacacttgTTCCTATGATATTGGAT--CCCTATTCTTCACCTTGAGGTTTATG-CCTCTAGCATAGTTTGGGCACAGCCCACTCTAGTACTCTCTACATAACCTGTGCAAGTTATTATACTTCTGCATATCTGAGGTCAGGAAAGAGGGGTCAGATATTTGGAACAGCCAAAGGATATTAGACATAGTAATCAAATAGACAGCCAAAGGATATTAGCTGTCTACTGCTGCATAAAATTTTAACTAAAACTTAGTATCttaaaacaacatgaatttaTTATCACTCAGTTTCTGTGCATCACAGCTC---CAGACATGAAACAACTAGGCTCTC-TGATTATGATTTCACAAGGTCAAAATTATGATGTCAGCCAGGCTTCATTTCCATCTGGAATTTGGA-GTCCTCTTAAAAGCTCACGTGGTTATAGCAGAATTTAGTTCTTTGCAATTGTAAGAC-AAG-ATGCCTATT-CTTT---GCTGGTTGTCAGCATGGGGACA--CTCAGCTCCTTGAGGCCACCCACAGTTCTTTGCCATATG--GTCTTCTCCATCTTTAAAAGTGAGCAATGGAGACTCTCCT-TCTGCTGAATCCCTTTCAGATTTCAAATCTCTGTTACTATAAAGAGCCTTGCCCT------------------------------------------------------------TTTAAGGGCTATCTTGTCTAGGTCAGGCCCGctgaacatgatctcatttctttaaGTAAACTGTGCCAAATAACACAATCTAATTATGAGAG-------TGGT---------------ATCACAAA--CACAGGTCTTTCTCACAGTCAAAGGGAGGATATTCTATAAGAGCATGGGCCATTGGGGCTTATGGGCTTATTTTATAATTCTGTCTACCACATAA-TTCTTGAAGGGAGTATCATAAAGCCAAGGCCTAAGGCAAGGCAAGTAAGCTGTTATCTTCAGGAGGGCTGGACAGAGAAGGCAAGGAGAGGGCATAATAGGAAATATGGATGTTCACATGAGTG---ATGACTGCCATCTAATGAAGATATGGGACAAAGA--GGGTATTTTGTCCAAGGAATGGCATTGTTAA---TATTCCATCTCACAACTGTTTAGAGAAACGCGAACAATTTTGCTAACTGCAATTTACCACTTCCTAATGGAAAATATTCTAGCACAGTGAT-CTTCTGTGCAATTGGGTGGCCAAACTGATGTCTGCCTACCCGGGGTAAAGCCAGTTTGTGAAATATGATGAATACTGAATGACTCA--AAAGGGTTTTACATAATTGGCAGCAGCCAAAGAAA------CCTAATGAAttcttttacaaaaacaaaaca-taacagcaacaaagcaaataaatgaaaacagcatgTCCTTAGAATCCTCAACATAGGTTGCAAATT--GAAGGCTTTGATGGCAGA--------CTTTCAGGATTCAAATCCTAACTTTCTAACTTACTAAATATTTGACCTTGGGTAAGTGATTGAACTTCATTTTA-----------------TGTGTATAGATCTACAGATACATACatctatgtctgtgtgtgtgtgtgtgtgtgta----------tgtaatatagatatacatataaaatgtatatataatttggaCA---------AATGCTGGAAAAGTAGTTAGTATACAATACAAA-----GTCATTATTACCACTAGTTGTTTATAGTCC i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19899741 2289 - 48547382 TTTTAACTTGAAGCCTTGCAAAATGACATTTTTCTCCAAATGCACTTGGTGAA--TTTTTTATACAACTCTAAACTA--GA--GCTGAATCAACTGTAGGGAATGTGCTGAATGTCCATCCATAAAGGGAAACAAGATTAATGACCTCTAAGTGTGAATGGGCAAAAGCAATTTACAAGAGTGAGTGAGGGTCATATTTTATCACAGGCAGGTGGCTTATTCCAACTTTGCAAACAGTTACCAAAAATGCACACAACCACAAATCTTTGGCCTTTCCATCCTCATGTGGAACCATTGTGTGTGCTAGACAAATTAT-CCTACTAT----GTTTTAACCCCAAACTCAATCTTTATATGTTAATGAAGACT-AAAATAGATTGCTAGAAAACTCACTGAAGCAGAAACTAACAGAAAAAGCATTTTGCTTCCCAACCCACTCCACAGGATCTGTACTTCACCCAGCAAGAAAAGGAGCATCAAATTTTGCTTCTCACTATGTGGAAAACCCTTAA-TGCATGGTCTGCTAATTTTGGAATTT-AAAAATTTTCTTTCACCTTGGACTTTGTCCTTGTTCCAATGAATTGCGACTTCAAATCAGTATATCATA-------------------------------------TG---GTGTTTGTTTTTATGT-------------------------------------------------------------TTTTGGTAGTCGTAGTAGGGGGTGTTAGAAGGTATGCAATATGGGAGGACAC-TGGTAAAATCTTTCTAGTACAAATCACAAAATAACAAAAATAAAAACACTTGTTCCTATGATATTGGAT--CCCTATTCTTCACCTTGAGGTTTATG-CCTCTAGCATAGTTTGGGCACAGCCCACTCTAGTACTCTCTAAATAACCTGTGCAAGTTATTATACTTCTGCATATCTGAGGTCAGAAAAGAGGGGTCAGACATTTGGAACAGCCAAAGGATATTAGACATAGTAATCAAATAGACAGCCAAAGGAtattagctgtctattgctgcatataaatttacctaaaacttagtatcttaaaacaacatgaatttattatcactcagtttctgtgtgtcacaactc---cagacatgaaataactaggctctc-tgattatgatttcacaaggtcaaaattatgatgtcagccaggcttcatttccatctggaatttggg-gtccttttaaaagctcacatggttatagcagaatttagttctttgcaattgtaagac-aag-atgcctatt-cttt---gctggttgtcagcatggggcca--ctcagctccttgaggccacccacagttctttgccatatg--gtcttctccatctttaaaagtgagcaatggagactctcct-tctgctgaatccctttcagatttcaaatctctgttactataaagagccttgccct------------------------------------------------------------tttaagggctatcttgtataggtcaggcccactgaacatgatctcatttctttaagtaaactgtgccaaataacacaatctaattatgagag-------tggt---------------atcacaaa--cacaggtctttctcacagtcaaagggaggatattctataagagcatgggtcactggggcttatgggcttattttataattctgtctaccacGTAA-TTCTTAAAGGGAGTATCATAAAGCCAAGGCATGAGGCAAGGCAAGTAAGCTGTTATCTTCAGGAGGGCTGGTCAGAGAAGGCAAGGAGAGGGCATAACAGGAAATATGGATGTTCACATGAGTG---ATGACTGCCATCTAATGAAGATTAGGGACAAAGA--GGGTATTTTGTCCAAGAAATGGCATTGTTAA---TATTCCATCTCACAACTGTTTAGAGAAACACGAACAATTTTGCTAACTGCAATTTACCACTTCCTAATGGAAAATATTCTAGCACAGTGAT-CTTCTGTGCAATTGGGTGACCAAACTGATGTCTGCCTACCCTGGGTAAAGCCAATTTGTGAAATATGATGAATACTGAATGACTCA--AAAGGGTTTTACATAATTGGCAACAGCCAAAGAAA------CCTAATGAATTCTTTTACAaaaacaaaaca-taacagcaacaaagcaaataaatgaaaacaGCATGTCCTTAGAATCCTCAATATAGGTTGCAAATT--GAAggctttgatggcaga--------ctttcaggattcaaatcctaactttctaacttactaaatatttgaccttgggtaagtgattgaacttcATTTta-----------------tgtgtatagatctacagatacatacatctatgtc----tgtgtgtgtgtgtgtgtatatatatatgtgtaatatagatatacatataaaatgtatatataATTTGGACA---------AATGCTGGAAAAGTAGTTAGTATACAATACAAA-----GTCATTATTACCACTAGTTGTTTATAGTCC i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21258484 2246 - 190850796 TTTTAACTTGTAGCCTTGCAAAGAGACATTTTTCTCCAAATGCACTTGGTGAG--TTTTTTATATGACTCTAAACTA--GA--GCTGAATCAATTGTAGGGAATGTGCTGAATGTCCATCCATAAAGGGAAACAAGATTAATGATCTCTAAGTGTGAATGGGCAAAAGCAATTTACAAGAGTGAGTGAGGGTCATATTTTATCACAGGCAGGTGGCTTATTCCAACTTTGCAAACAGTTGCCAAAAACGCACACAACCACAAATCTTTGGCCTTTCCATCCCGACGTGAAACCATTGTGTGTGCTCGACAAATGAT-CCTACTAC----GCTTTAACCCCGAACTCAATCTTTATATGTTAATGAAGACT-AAAATAGATTGCTAGCAAACTCCTTGAAGCAGAAACTAACAAAAAAAGCATTTTCCTTCCCAACTCACTCCACAGGATCTGTACTTCACCCAGCAAGAAAAAGAGCATCAAATTTTGCTTCTCACTATGCAGAAAACCCTTAA-TGCATGGTCTGCTAATTTTGGAATTT-AAAATTTTTCTTTCACCTTGGACTTTGTCCTTGTTCCAATGAATTCTGACTTCAAATTAGTATATCATA-------------------------------------TG---GTGTTTGTTT---TGT-------------------------------------------------------------TTTTGGCAGTCGTAGT-GGGGGAGTTAGAAGGTATGTAATATGGGAAGACAC-TGGTAAAATCTTTCTAGTACAAATCATAATATAACAAAAATAAAAATACTTTTTCCTGTGATATTGGAT--ACCTA-TCTTCACCTTGAGGTTTATG-CCTCCAGCATAGTTTGGGCAGAGCCCACTATAGCACTCTCTATATAACCTGTGCAAG---TTATACTTCTGCATATCTGAGGTCAGGAAAGAAGAGTCAGACACTTGGAACGGCCAGAGGATATTAGACAGGGTAATAAAATAGACAGCCAAAGGAtattagctgtctactgttgcataaaaaattacctaagacttaatgtcttaaaacaacatgaatttattctcactcagtttctgtgggtc-ctgctc---c------------------------agattatgatctcac-aggacaagattatgatgtcacccgggctccatttccatctggagtttgggggtctgcttaaaagcttgcctggttgtagcagaatttagttctttgcaactgtaagac-aag-atgcccatt-cttt---gctggctgtcagcatggggcca--ctcagctccttcagaccacacacagttctttgcaatatg--gtcttctccatctttaaaagtgagaaatggagactcttctgcctgctgaatccctttcacatttcaaatctctattaccacaaagagctttgtcct------------------------------------------------------------tttaacggctagctggcatagattaggcccactgaacatggactcctttatttaaataaactgtgacaaataagacaatctaattatgggag-------tggtacc--atggcactgcatcacaagcacacagatctctctcacagtgaaagggaggatattctacaaggacatgggtcatcg--------gggcttattttataattctgtctaccacaTAA-TTCTCAAAGGGAGTATCGTAAATCCAAGGCCTGAACCAAGGCAAATAAGCTGTTATCTTCAGGAGGGCTGGACAGAGAAGGCAAGGCGAGGGCATAAGAGGAAATACAGATGTTCAGATGAGTG---ATGACTACCATCTAATAAAGATTAGGGATAAAGA--GGATATTTTGTTCAAGGAATGACGTTGTTAA---TACTCCATTTCACAACTG-TTAGATAAATGGAAATAATTTTGTTAACTGTAATTTACCACTTCCTCATGGAAAATATTCTAGCACAGTGAC-GTTTTATGCAATTGGGTGACCAAGCTGATGTCTACCCACCCTGGGTAAAGCCAATTTATGACATATGATGAACACTGAATGACTCA--AAAGGGTTTTACATAATTGGCAACAGCCAAAAAAA-------CTAATAAATTATTTTACAAAAACAAAACA-TAACAGCAACAAAACAAATAAACAAAAACAGGATGTCCTTGGAATTCTCAATATAGGTTGGAAATT--GAAGGTTTTAATggcaga--------ctttcaggattcaaatcctagctttctaacttactaaatatttaacctt-ggtaagttattgaacttcATTTta-----------------tgtgtatagatctacagatatatatatctatgta----------tatatatacaca----------tgtaatatagatatacatataaagtatatacataATTTGGACA---------AATGCCGGAAAAGTAGTTAGTATACAATACAAA-----GTCATTATTGCCACTACTTGTTCATATTCC i calJac3.chr3 C 0 I 240 s mm10.chr5 49241356 2353 + 151834684 TTTTAACTTG-----TGGTGAAGTGACATTTTTCTCCAAGTGCACTTTGTAAA--TTTTTTATACAACTCTAAACTATGGA--GGCAAATCAATAGTGGGGAATGTGTTGAATGTCCATCCATAAAGGGGAAGAAGACAAATGGCCTCTAAATGTGACTGAGCAAAAGCAATTTACAAGAATATGTGAGGATCATATATTAGCAGAAGCAGGTGGCTTATTC-----------GCAGTTATCAACAATTCAGATGACCAT-TATCCTTAGTCTTTCTG----CATGGGAATCGACTGTGAGCTTTGGCTAGAAGATGTCTTCTATAAACATAGTAACCCTCAGCTTAATCTTCACATTTAAATTAATATT-AAAAGAAATTGCTAGAGAACCCCATGAAGCAGCCACTAACAGAAAAAGAACTCATATTCTCAACCCTCTTCACAGGCACTGTACTTTACCCAGCAGGAAAACAAG-ATTGAATTGTGTTTCTCCCTGTGCAGAAACCCCCTAG-TAAATGATATACTAATTCTGGATTTTCCCACACTTTCTTTAACCTTGG-CGTTGCCCTTACTCAACTGAACCATGTCTTCTAATCTGTGTTTCATAgtgcgcgcgtgcgcgtgtgtatgtgtgtgtgtgtgtgtgtatgtgtgtgtgtgtatgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtTTACATTGTCATTGAAGGTAGCAACAG-AGGAACACAAGATAGGAGAATGCATGGTTAAATCTTGCTAGAAC-AATCATTTAAT-ATAAAAGTATAATTAATCATTCCAGTGCTATTTGTA--TCCTGTTCCTCATCTTGACTTCAATG-CCTCTAGTATGGTTTGGGCCAATTCTTCTCTAATA-----GAAATGTCCTAGATTACCTCCTATACTT---CACATTCGAGATCAGTACAGA--AGTTAGACCTTGGAAGCAG---------------------------------AGCCAAAGCAtattaactatctcttactgaagaggaaattactgaaaattcagcatattaaaataaaattagcttattatctttgaatttcagtgagtcaggatgcaagcaggcagaagatagctaggttctt-tgtttctaattgcaaaagcccaaaattatggtgccacttggttttcgcatgcttcttaaatcaag--gtcctcttgcaat------------taccacaatttaatattttccaattataacac-tggcattactatt-tttttacactgattacaggtaggatagtt--ttcaacaacttgagaacatccacagtttcttatcatgta--acctcct-gatccttaaaagccagcaatggagaatctttc-tcttgtcaaaaccattcatattataaatacctatcaccaggaagaTGTCTGCTGTGTGTGTGTGTGGGGGGGGGTATATGAGGTAGGTACATGGAACCTCATATATTTAAGTATATGTAAGTGTTAACTTGATTGGAATGTGCCCACTGAACATAATCTT-TCTCAATGTGGAGACAATGACAAAGGATAAAAGCTAATTATGGGAGGGTTTCATGGTGTCAAATCACAATCAATCATAAC--CACAGGTCCCTGTCAAAG-CAAAGTGTG-----------------TGGGTCACTG--------TGG-TCACTGTAGAA--CTGTCTGCCTCATAA-TCATTGAAG--------------CCTGGCATAGAACCAAGGTAAATAAACTCCCTTCACCAAAAGGACTGGCCAGA-ATTACAAGGAGAAAGCAACTCAGGCAATATGTACACACTTGTAGCTGTTAATAGCTGAATTCCCATTAAGATCAGAGATATAAA--AGATATATCATCCCAAGAATGACCCTGAAAA--GTACTCCTTTTCACA-----TTAGGGAAATGTGAAT-ATTTAGTTAATAG-AATGCACCATTTATTAACTGAAAATATTCTAACATAGTGTCATTTTTCTGTAAGTACGTAAACCAGCTGATGATGGATGATCCTAGATAAGGACAA--------ACATGACAGATGTT---CGATTCAGCACGGGGCTCTACATCACTGACAGCAGCCAAATATAAGATTTCCTA------TCTTTTGGAAAAATAAAAT--CAAC--CAACAAA--AAATACATAAAAACAG-ACCTCATTAGTATTGCtagcatagggcttaaattaggaatcctctaaagacaaagtggatgtatttgtgtgtctgacccaaaactttc---------aaatatttgatcttgagcaagttctttggttttattctg-cctcaCAGA-----CTTGTCTTAAGAT-TAAAAAGATAGCAGGCTACATG-----------ATTAATATCTA--------AGTTTAATGCATGCAAATATGTGAGATGTGCaaataatttagaaaatatttattattatCATTAATGTGATTTATATGAAATAAAAACAGACGTCTTCACTACCACTAATTATTCACAGGAA i mm10.chr5 C 0 I 3 s canFam3.chr3 3833427 2184 - 91889043 -TCTTACTTGTACCCTTGTAATGTGACATTTTTCTTCAACTGCACTTTGTGAAATTTTTTTATACCACTCTGAACTA--GAGTGTTGAATCAATTGT-GGGAATGTGCTGAATGTCCATCTATAAAGGGAAACAAGATTAACGACCTCTAAATGTGAATGGGCACAAGCAATTTACAAGAGTGAGTGAGGGTCATATTTTATCCCAGGCAGGTGCCTTATTCCAACTTTGAAAACAGG----AAAAATGCACACAATCACAAATCTTCAGCCTTTCTATCCTCATGCAAGACCACTGTGTGTTCAGGATGAATGATGCCTACTAT----GTTTTAATCTTGAACTCAATCTTCATATGTTAATGAAGACCAAAAAAAGAATGCTAAAGTACTCCATGAATCAGAAACCAACAGAAAAAGCATTTTCCTTCTGAACCCACACCACAGGGTCTCTACTTCACTCAGCAAGAAAAGGGGCATCAAATTGTATTGCTCGCTATGCAGAAAACCCTTAAGGGCATGGTCTACTCATTTTGCATTTTCCTGAATTTTCTTTCACCTTAGACTTTGTCCTTGTTCCACTGAACTGTGACTTCTAATCAGTGCATCATA-------------------------------------TG---GTGTTTATTTTTGTCT-------------------------------------------------------------TTTTGGTACTCCTAGTAGGGGGTGTTAGAAGGTATGTGA-ATGGGAAGATGC-TGGTAAAATCCTTCTAGAACACATCATAAGGTAACAAAAGAACCCACACTTATTCCTATGATATTGGGTCCCCCTATTCCTCACCTTGGTGATAATGACCCCTAGGATAGATTGGGCAAAACCCATTCTAGGACCAACTAAATGACCTGTGTGAGTT----TACATATGCACATTTGAGGTCAAGGAAGAAGAGTTAGATATTTGGAATC--------------------------------AAAGTCAAGGtgtattagccatctatcgatgcataacaaattctctaaaacttagtagcttaagacagcattgatttattatc--ttggtttccattggtcaggggtt---cagagacagaataactgtgttctc-tgcagatagtctcaccaggccaaaattacagtaccagccaggctctcttcttatctggagtttagg-gtccttttgcca-ctcatgtggttgtaaggaaacttaattcctcgccgttttaaggctgag-gtctctattccttt---gctggttgttagcatggggccactctcagcagctggaggccatccatggttccttctcatgtgccccctcctctaccctcaaa--tctactatggagactctcccttttgttaaatccttttctcattgtgaacctctgttgctaggaagaaccttgtcct------------------------------------------------------------tttaagggttggcctgatt--gtcatgcctactgagcaaaatctcctttcttaaagttaactgtgccagataacaaaacctaattatgggag-------tgatatt--gtgatattacatcatcat--cacagatccctctcacggtcaatgggaggatgttatac-agggtgtgggtctttgg-------gggatcatcttagaattctgtctaccacGTAAGGTATTGAGGACAATATAATGAAACCAAAGCCTGAGCCAAGACATGTAAGCTATTATCTCCAGGATGGCTGTCCAGAAAAGGCAGCAAGAGGGCATGTCTGGAAAGAGAGA--------GCAATG---ATGAATAAATCTTAGTTAAGTTTAGGGGTTAAAATGGGATATTTTGATAAAGGAATGGCATAGTGAAACATACTTTATTTTATAA-TATTAAGAGAAATATGAATATTT---------GTAACTTCCCATTCCCTAACTGAAAAGATTCTAGGACAGTGTC-CTTCTGTGCTATTGGGTAACCAAGCTAAAGCCTGCCAATTCTGGGTAAGGCAAC-TTACAAAATACGATGAATGCTGAATGAGTTA--AA--GGTTCTACACCATTGGCAACATCCAGAGAAA--------------GTTCT-----GGAGATTTAAGA-AAACAACAGCCAAACAAATAGCCAGAAGAAGCA--TTCTCAGTATCCTcagtattgactgcagatgaagagaatgctagtggtaga--------ct----gtgtttgaatttcacctcgctaacttcctggctatttgaccttgggaaagttatccaacttcatttttgcctcGCATAGCTTGGTTGTAAATAGGAGGACAGAAGGATAT---CAGGTT--------------------GA----------TGTGATTTTAA-ATGCCTGTCAGAGCTATA-------TGAAGA---------AATATC--------------------------A-----GCCATTATTATCATCAGGTGTTCATATTCC i canFam3.chr3 C 0 C 0 a score=483270.000000 s hg38.chr4_KI270790v1_alt 137826 136 + 220246 TCTTAATATTA-CTGGAACT------AAAGTTTGTGTGTCTCAGCCCTAACACCGACATTGCGAAGTTCCAACAGGTCTACACCTCTAACAC----TTCTATATTTATTTATTTGCTCATCCATCTAATCTTCTGGATGGTAAATTT s panTro4.chr4 21524182 136 + 193495092 TCTTAATATTA-CTGGAACT------AAAGTTTGTGTGTCTCAGCCCTAACACCGACATTGCGAAGTTCCAACAGGTCTACACCTCTAACAC----TTCTATATTTATTTATTTGCTCATCCATCTAATCTTCTGGATGGTAAATTT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21701662 136 + 198332218 TCTTAATATTA-CTGGAACT------AAAGTTTGTGTGTCTCAGCCCTAACACCGACATTGCGAAGTTCCAACAGGTCCACACCTCTAACAC----TTCTATATTTATTTATTTGCTCATCCATCTAATCTTCTGGATGGTAAATTT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20314134 136 - 85365473 TCTTAATATTA-TTGGAACT------AAAGTTTGTGTGTCTCAGCCCTAACACCGACATTGCGAAGTTCCAACAGGTCTACACCTCTAACAC----TTCAATATTTATTTATTTGCTCATCCATCTAATCTTCTGGATGGTAAATTT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16778165 136 + 184069350 TCTTAATATTA-CTGGCAAT------AACGCTTGTGTGTCTTAGCCCTAACACCGACATTGCAAAGTTCCAACAGGTCTACACCTCTAACAC----TTCTATATTTATTTAGTTGCTCATCCATCTAATCTTCTGGATAGTAAATTT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20828103 136 + 189454096 TCTTAATATTA-CTGGCAAT------AACGTTTGTGTGTCTTAGCCCTAACACCGACATTGCAAAGTTCCAACAGGTCTACACCTCTAACAC----TTCTATATTTATTTAGTTGCTCATCCATCTAATCTTCTGGATAGTAAATTT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16418029 136 + 178775436 TCTTAATATTA-CTGGCAAT------AAAGTTTGTGTGTCTTAGCCCTAACACCGACATTGCAAAGTTCCAACAGGTCTACACCTCTAACAc----ttctatatttatttagttGCTCATCCATCTAATCTTCTGGATAGTAAATTT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19902030 136 - 48547382 TCTTAACATAA-CTGGAAAT------AAAGTTTGTGTGTCTTAGCCCTAACACCGACATTGCAAAGTTCCAACAGGTCTACACCTCTAACAC----TTCTATATTTATTTAGTTGCTCATCCATCTAATCTTCTGGATAGTAAATTT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21260970 136 - 190850796 TCTTTATATCT-ATGGAACT------AAAATTTGTGTGTCTCAGCCCTAACATCGACATTGCAAAGTTCCAACAGGTCTACACCTCTAACAT----TTCTATATGTATTTATTTGCTCATCCACCTAATCTTCTGGATGGTAAGTTT i calJac3.chr3 I 240 C 0 s mm10.chr5 49243712 135 + 151834684 TACTAATTTTT-ATAGGAACAATTAAAAGGCTTCTCTGTGTTAATCCAAACCTTGACATT-CAAAATCTCTACA--TATATACTGCAATAAT----TTGTAACATAGCTTATATG----TCCATCAAATCATGGTGATGAAAAACTT i mm10.chr5 I 3 C 0 s canFam3.chr3 3835611 139 - 91889043 TCATAATACTACCCAGAACT------GAAGTTTGTATATCGTGGCCCTACCACTGATACCTCGAAGTTCCAATGGGT--ACGCCTCCATCATAGCATTCTGTAGTTATGTGCTTGTCCATCCATCTAATCTTCTGGGTAGCAAATTT i canFam3.chr3 C 0 I 143 a score=1429713.000000 s hg38.chr4_KI270790v1_alt 137962 469 + 220246 CTTAAGGTAAAAAAGT----TGTGCTT--------CTCATTGATCTAC-----------CTTT---------TAGTGGACAATTTATGC-------TGGCTTGACTATCACACCAGCCTTAACAGTAAATCATCCTTGTAGTATAAGTTTTCAGTTGTGGCAGGCTTTGTCAGCAACTTATTCATTTTACATTTATACTT-C----TAGCA--GAACCTGGATTCTGTTAGGGGCAACAGAGTGTCAGGCTCTTTGGCCCACCACCTCTTTTGGTACCATTTTGATGAAAAAGTATAGGGAGAAATACCTCAGGCCTTCCTGTCTAAA------ATGGGGATGTCAGGT--------GGGAGGTGGAACACCCACTTAGTGACCCAAAGGAATATTCT---AGAAGACAGACACAAGCTAAAGACATTAG-GCTGAAAGATGTAAGGAGCCTGAGACATTG-GGGCCTGAAAACCTGCTGAAGCCATGCTGGAAAGGCTACTCCTGTGCTTGCTGATATATAAGGAAAATAAAT s panTro4.chr4 21524318 469 + 193495092 CTTAAGGTAAAAAAGT----TGTGCTT--------CTCATTGATCTAC-----------CTTT---------TAGTGGACACTTTATGC-------TGGCTTGACTATCACACCAGCCTTAACAGTAAATCTTCCTTGTAGTATAAGTTTTCAGTTGTGGCAGGCTTTGTCAGCAACTTATTCATTTTACATTTATACTT-C----TAGCA--GAACCTGGATTCTGTTAGGGGCAACAGAGTGTCAGGCTCTTTGGCCCACCACCTCTTTTGGTACCATTTTGATGAAAAAGCATAGGGAGAAATACCTCAGGCCTTCCTGTCTAAA------ATGGGGATGTCAGGT--------GGGAGGTGGAACACCCACTTAGTGACCCAAAGGAATATTCT---AGAAGACAGACACAAGCTAAAGACATTAG-GCTGAAAGATGTAAGGAGCCTGAGACATTG-GGGCCTGAAAACCTGCTGAAGCCACGCTGGAAAGGCTATTCCTGTGCTTGCTGATATATAAGGAAAATAAAT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21701798 472 + 198332218 CTTAAGGTAAAAAAGT----TGTGCTT--------CTCATTGATCTAC-----------CTTT---------TAGCGGACACTTTATGC-------TGGCTTGACTATCACACCAGCCTTAACAGTAAATCATCCTTGTAGTGTAAGTTTTCAGTTGTGGCAGGCTTTGTCAGCAACTTATTCATTTTACATTTATACTT-C----TAGCA--GAACCTGGATTCTGTTAGGGGCAACAGTGTGTCAGGCTCTTTGGCCCACCACCTCTTTTGGTACCATTTTGATGAAAAAGTATAGGGAGAAATACCTCTGGCTTTCCTGTCTAAA------ATGGGGATGTCAGGC--------GGGAGGTGGAACACCCACTTAGTGACCCAAAGGAATATTCTAGAAGAAGACAGACACAAGCTAAAGACATTAG-TCTGAAAGATGTAAGGAGCCTGAGACATTG-GGGTCTGAAAACCTGCTGAAGCCATGCTGGAAAGGCTACTCCTGTGCTTGCTGATATATAAGGAAAATAAAT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20314270 473 - 85365473 CTTAACGTAAAAAAGT----TGTGCTT--------CTCATTGATCTAC-----------CTTT---------TAGTGGACACTTTATGC-------TGGCTTGACTATCACACCAGCCTTAACAGTAAATCATCCTTGTAGTATAAGTTTTCAGTTGTGGCAGGCTTTGTCAGCAACTTATTCATTTTACATTTACACTTAC----TAGCA--GAACCTGGATTCTGTTAGGGGCAACAATGTGTCAGGCTCTTTGGCCCACCAGCTCTTTTGGTACCATTTTGATGAAAAAGTATAGGGAGAAATACCTCAGGCTTTCCTGTCTAAA------ATGGGGATGTCAGGT--------GGGAGGTGGAACACCCACTTAGTGACCCAAATGAATATTCTAGAAGAAGACAGACACAAGCTAAAGACATTAG-GCTGAAAGATGTAAGGAGCCTGAGATATTG-GGGTCTGAAAACCTGCTGAAGCCATGCTGGAAAGGCTACTCCTGTGTTTGCTGATATATAAGGAAAATAAAT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16778301 452 + 184069350 CTTAAGGTAAAAAGGT----TGTGCTT--------CTCATCGATCTAG-----------CTTT---------TAGTGGATTCTTTATGC-------TGGCTTGACTATCAC---------AACAGTAAATCATCCTTGCAGTATA-------AGCTGTGGCAGACTCTGCCAGTAACTCATTCATTTTATGCTTATACTT-C----AAGCA--GAGTCTGGATTTTGTTAGGGGCAACAATGTG-CAGGCTCTTTGACCCACCACCTCTTTTGGTACCATTCTGATGAAAAAGTATAGGGAGAAATACCTCAGACTTTCCTGTCTAAA------ATAGGGATATGAGGT--------GGGAGGTAGAACACCCACTTAGTGACTCAAATGAATATTCT---AGAAGACAGACACAAGCTAAAGACGTTAC-GCCAAAAGATGTAAGGAGCCTGGGATATTG-GGGTCTGAAAACCTGCCGAAGCCGTGCTGGAAAGGCTATGCCTATACTTGCTGATATATAAGGAAAATATAT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20828239 452 + 189454096 CTTAAGGTAAAAAGGT----TGTGCTT--------CTCATCGATCTAG-----------CTTT---------TAGTGGATTCTTTATGC-------TGGCTTGACTATCAC---------AACAGTAAATCATCCTTGCAGTATA-------AGCTGTGGCAGACTCTGCCAGTAACTCATTCATTTTATACTTATACTT-C----AAGCA--GAGTCTGGATTTTGTTAGGGGCAACAATGTG-CAGGCTCTTTGACCCACCACCTCTTTTGGTACCATTCTGATGAAAAAGTATAGGGAGAAATACCTCAGACTTTCCTGTCTAAA------ATAGGGATATGAGGT--------GGGAGGTAGAACACCCACTTAGTGACTCAAATGAATATTCT---AGAAGACAGACACAAGCTAAAGACGTTAC-GCCAAAAGATGTAAGGAGCCTGGGATATTG-GGGTCTGAAAACCTGCCGAAGCCGTGCTGGAAAGGCTATGCCTATACTTGCTGATATATAAGGAAAATATAT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16418165 452 + 178775436 CTTAAGGTAAAAAGGT----TGTGCTT--------CTCATCGATCTAG-----------CTTT---------TAGTGGATTCTTTATGC-------TGGCTTGACTATCAC---------AACAGTAAATCATCCTTGCAGTATA-------AGCTGTGGCAGACTCTGCCAGCAACTCATTCATTTTACACTTATACTT-C----AAGCA--GAGTCTGGATTTTGTTAGGGGCAACAGTGTG-CAGGCTCTTTGACCCACCACCTCTTTTGGTACCATTCTGATGAAAAAGTATAGGGAGAAATACCTCAGACTTTCCTGTCTAAA------ATAGGGATATGAGGT--------GGGAGGTAGAACACCTACTTAGTGACTCAAATGAATATTCT---AGAAGACAGACACAAGCGAAAGACGTTAC-GCCGAAACATGTAAGGAGCCTGGGATATTG-GGGTCTGAAATCCTGCCGAAGCCATGCTGGAAAGGCTATGCCTATACTTGCTGATatgtaaggaaaatatat i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19902166 452 - 48547382 CTTAAGGTAAAAAGGT----TGTGCTT--------CTCATTGATCTAG-----------CTTT---------TAGTGGATTCTTTATGC-------TGGCTTGACTATCAC---------AACAGTAAATCATCCTTGCAGTATA-------AGCTGTGGCAGACTCTGCCAGCAACTCATTCATTTTACACTTATACTT-C----AAGCA--GAGTCTGGATTTTGTTAGGGGCAACAGTGTG-CAGGTTCTTTGACCCACCACCTCTTTTGGTACCATTCTGATGAAAAAGTATAGGGAGAAATACCTCAGACTTTCCTGTCTAAA------ATAGGGATATGAGGT--------GGGAGGTAGAACACCCACTTAGTGACTCAAATGAATATTCT---AGAAGACAGACACAGGCTAAAGATGTTAC-ACCGAAAGATGTAAGGAGCCTGGGATATTG-GAGTCTGAAAACCTGCCGAAGCCATGCTGGAAAGGCTATGCCTATACTTGCTGATATATAAAGAAAATAAAT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21261106 467 - 190850796 CTTAAGGCAAAAAAGT----TGTGCTT--------CTCATTGATCTAG-----------CTTT---------TAGTGGACACTTGATGC-------TGGCTTGACTACCACACCAGCCATAACAGTAAATCATCCTTATCACATAAGTTTTCAATTGTGGCCGACTCTGCCAGCAGCTTATTCATTTTACATTTGTACTG-G----TAGCA--GAACCCATATTCTGTTAGGGGCAACAGTGTGTCAGACTCATTGGTCCACCACAAATTTTGGTACC------ATGAAAAAGTATAGGGAGAAACACCTCGGGTTTTCCTGTCTAAA------ACGGGGATGTGAGGT--------GGGAGGTGGAACACCCACTTAATGACCCAAAGGAATATACTAGAGGAAGGCAGATACAAGCAAAAGATGTTTG-GCTGGCAGATGTAAGGAGCCTGGGAGATTGAGGGCTTGAAAACCTGCTGAAGCCATGCTGGAAAGGCTACACCTTTGCTTGCTGATCTATAAGGACAATAAAT i calJac3.chr3 C 0 C 0 s mm10.chr5 49243847 484 + 151834684 -TTGAGGTAAAAAATTGATCTGTACTTGAGGTAAATTCATTGATCTGT-----------ACTTCTAGGTCCATGGTAAGCATTTTATAC----AGATGAAATGGCTATCATGCTAGCATGAACAGTAAGG-GTCTTTGCAGTTTGCCTCTTCAGTTACAGCAGAAGTGGCC-TCAGGTTACACAATATACATTTATGCTT-CT---TAGCAGTGAACCAGGATTTGGCC-TGGGTAGGGAAATGTCCCACTCATTGACTCATTACACATTTAGGTATGGCTCCGGTTAAAACAAGTAGG------------AGCCTTTCTTATCGAGATTGGCTATGGCTGTGTAAAGTTAAGCTCAGGGATG-GGAATGGTTCTTTTATGACCTTGAGGCTTAAATAGGAAGAGGA-AGATTCAGGATAGAGACTTCAGTACTCAAAGGC---AGCGACTGGTGACTTGA-GAATTTGAGAA-----TAAGG----GTGGGAAAGGCTATGTGCATACATTCTGATACGTGCAGAAAATAAAT i mm10.chr5 C 0 C 0 s canFam3.chr3 3835893 469 - 91889043 CTCAAGGATAGAGAGT----TGTGCCT--------CTCACTGATCTATAAATCAACAGACCTG---------TGGTAGATACCTTATACCTATGCATTGCTTGAGTATCCTATATGCATAAGCGGTAAATCGCTTCTGCAGTATGGGTTTTCAGTTATGGTAGACACTGCCAGCCACCT----GATTTACATTTATGCTT-CTTACTAACT--GAATAGAGATTTTGTTTGAAGGAGCAGTATGCAAGGCTCAACGATCCACAGTCCCTTGTGGTACAGTCCTGTCCAAAAGACAAAGGGGGACACAGCTGGTACTTTCctgacggga------atgaggatatgagtt--------aggaggtggagcagccattctgtgactttgaggcata--------------------acactaagaatagcagtgtggaaagacataaaaaatctgggatatta-aggacatgagcatcactg-tgtaatacttgacagggcacctctg-acctcctgatatgtgaggaaaataaat i canFam3.chr3 I 143 I 12 a score=103689.000000 s hg38.chr4_KI270790v1_alt 138431 47 + 220246 TTTCCTTGAGCCACATGCTACAAGTGCCAAATTTTCCATTGAGCCAT s panTro4.chr4 21524787 47 + 193495092 TTTCCTTGAGCCACATGGTACAAGTGCCAAATTTTCCATTGAGCCAT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21702270 47 + 198332218 TTTCCTTGAGCCACATGTTACAAGTGCCAAATTTTCCATGGAGCCAT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20314743 47 - 85365473 TTTCCTTGAGCCACATGCTACAAGTGCCAAATTTTCCATTGAGCCAT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16778753 47 + 184069350 TTTCCTTGAGCCGCATGCTACAAGTGCCAAATTTTCCATTGAGCCAT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20828691 47 + 189454096 TTTCCTTGAGCCGCATGCTACAAGTGCCAAATTTTCCATTGAGCCAT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16418617 47 + 178775436 tttccttgagCCGCATGCTACAAGTGCCAAATTTTCCATTGAGCCAT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19902618 47 - 48547382 TTTCCTTGAGCCGCATGCTACAAGTGCCAAATGTTCCATTGAGCCAT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21261573 19 - 190850796 TT----------------------------GTATTTGGTTGAGCCAC i calJac3.chr3 C 0 C 0 s mm10.chr5 49244331 12 + 151834684 TCCTCTCTAG-----------------------------------GT i mm10.chr5 C 0 C 0 e canFam3.chr3 3836362 12 - 91889043 I a score=42606.000000 s hg38.chr4_KI270790v1_alt 138478 12 + 220246 ATGCTACAAGTG s panTro4.chr4 21524834 12 + 193495092 ATGCTACAAGTG i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21702317 12 + 198332218 ATGCTACAAGTG i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20314790 12 - 85365473 ATGCTACAAGTG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16778800 12 + 184069350 ATGTTACAAGTG i rheMac3.chr5 C 0 I 293 s macFas5.chr5 20828738 12 + 189454096 ATGTTACAAGTG i macFas5.chr5 C 0 I 338 s papAnu2.chr5 16418664 12 + 178775436 ATGTTACAAGtg i papAnu2.chr5 C 0 I 352 s chlSab2.chr27 19902665 12 - 48547382 ATGTTACAAGTG i chlSab2.chr27 C 0 I 370 s calJac3.chr3 21261592 12 - 190850796 ATGCTAGAAGTG i calJac3.chr3 C 0 C 0 s mm10.chr5 49244343 12 + 151834684 AAGTTAAAATGG i mm10.chr5 C 0 C 0 s canFam3.chr3 3836374 12 - 91889043 aagctacaacag i canFam3.chr3 I 12 C 0 a score=1746882.000000 s hg38.chr4_KI270790v1_alt 138490 464 + 220246 CCAGATTTCTGTTAAATGTAGCCTGGTACATGTTTTAACTGCTGCAACAGTGTATTCAGCATCGGAGGccaaaagatcaccaaagagatcaccaaagaATACAGTTAATCCATATTAATGTCAT-CTTCTGCCACTTGATGATATATAATTGGATGTAGAGCCACCGTTCAAGTAATGTGagtgggagcaagaggaagcaaacaaggagaataatgcagtaggatgtgcttaagcataacttcaagcaatgtggagcaatcatccattgctgggcaacaGAGAAAGGTTTCCATTTAGTGTTTCATTTTGCATGTGATATGTCATATAATTCAATCCGCCTGCTGGGGAAAGGGA-ACCACAAACAGAAA-AATGTAAATGTGGCTACAGACTTCAAGAGCACCAGACCTCTCTG-----GTGATATTCCACAAATTCATTATGCAC------CTTTAG---------GCAAATACTCACATACCCA s panTro4.chr4 21524846 464 + 193495092 CCAGATTTCCATTAAATGTAGCCTGGTACATGTTTTAACTGCTGCAACAGTGTATTCAGCATCAGAGGccaaaagatcaccaaagagatcaccaaagaATACAGTTAATCCATATTAATGTCAT-CTTCTGCCACTTGATGATATATAATTGGATGTAGAGCCACTGTTCAAGTAATGTGAGTGGGAGCAAGAGGAAGCAAACAAGGAGAATAATGCGGTAGGATGTGCTTAAGCATAACTTCAAGCAATGTGGAGCAATCATCCATTGCTGGGCAACAGAGAAAGGTTTCCATTTAGTGTTTCATTTTGCATGTGATATGTCATATAATTCAATCCGCCTGCTGGGGAAAGGGA-ACCACAAACAGAAA-AATGTAAATGTGGCTACAGACTTCAAGAGCACCAGACCTCTCTG-----GTGATATTCCACAAATTCATTATGCAC------CTTTAG---------GCAAATACTCACATACACA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21702329 452 + 198332218 CCAGATTTCTGTTAAATGTAGCCTAGTACATGTTTTAACTGCTACAACAGTGTATTCAGCATTGGAGGCCAAA------------AGATCACCAAAGAATACAGTTAATCCATATTAATGTCAT-CTTCTGCCACTTGATGATACATAATTGGATGTAGAGCCACTGTTCAAGCAATGTGAGTGGCAGCGAGAGGAGGCAAACAAGGAGAATAATGCCGTAGGATGTGCTTAAGCATAACTTCAAGCAATGTGGAGCAATCATCCATTGCTGGGCAACAGAGAGAGGTTTCCATTTAGTGTTTCATTTTGCATGTGATATGTCATATAATTCAATCAGCCTGCTGGGGAAAGGGA-ATCACAAACAGAAA-AATGTAAATGTGGCTACAGACCTCAAGAGCACCAGACCTCTCTG-----GTGATATTCCACAAATTCATTATGCAT------CTTTAG---------GCAAATACTCACATACACA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20314802 464 - 85365473 CCAGATTTCTGTTAAATGTAGCCTGGTACATGTTTTAACTGCTACAACAGTGTATTCAGCATTGGAGGccaaaagatcaccaaagagatcaccaaagaATACAGTTAATCCATATTAATGTCAT-CTTCTGCCACTTGATGATATATAATTGGATGTAGAGCCACTGTTCAAGTAATGTGAGTGGGAGCGAGAGGAGGCCAACAAGGAGAATAATGCTGTAGGATGTGCTTAAGCATAACTTCAAGCAATGTGGAGCAATCATCCATTGCTGGGCAACAGAGAGAGGTTCCCTTTTAGTGTTTCATTTTGCATGCGATGTGTCATATAATTCAATCAGCCTGCTGGGGAAAGGGA-ACCACAAACAGAAA-AATGCAAACGTGGCTACAGACCTCAAGAGCACCAGACCTCTCTG-----GTGATATTCCACAAATTCATTATGCAC------CTTTAG---------GCAAATACTCACATACACA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16779105 454 + 184069350 CCAGATTTCTGTTAAATGTACCCTGGTACATATTTTAACTGCTACAACAGTGTATTCAGCATTGAAGGCCAAAAGATCAACAAAGGGCTTGT---GGAATACAGTTAATCCATATTAATGTCAT-CTTCTGCCACTTGATGACATATAATTGGATGTAGAGCCACTGTTCAAGCAATGTGAGCGCGAGCGAGAGGAGGCAAACAAGGAGAATAATGCCGTAGGATGTGCTTAAGCATAACTTCAAGTAATGTAGAGCAATCATCCATTGCTGGGCAACAGAGAGAGGTTTCCATTTAGTGTTTCA-TTTGCATGTGATATGTCATATAATTCAATCAGCCTGCTGGGAAAAGGGA-ACCACAAACAGAAA-AATGTAAATGCGGCTACAGACCTCAAGAGCACCAGA-------GAGGAAGGGATATTCCACAAATTCATTATGCAT------CTTTAG---------GCAAAT----ACGTACACA i rheMac3.chr5 I 293 C 0 s macFas5.chr5 20829088 454 + 189454096 CCAGATTTCTGTTAAATGTACCCTGGTACATATTTTAACTGCTACAACAGTGTATTCAGCATTGAAGGCCAAAAGATCACCAAAGGGCTTGT---GGAATACAGTTAATCCATATTAATGTCAT-CTTCTGCCACTTGATAACATATAATTGGATGTAGAGCCACTgttcaagcaatgtgagcgcgagcgagaggaggcaaacaaggagaataatgccgtaggatgtgcttaagcataacttcaagtaatgtggagcaatcatccattgctgggcaacaGAGAGAGGTTTCCATTTAGTGTTTCA-TTTGCATGTGATATGTCATATAATTCAATCAGCCTGCTGGGAAAAGGGA-ACCACAAACAGAAA-AATGTAAATGCGGCTACAGACCTCAAGAGCACCAGA-------GAGGAAGGGATATTCCACAAATTCATTATGCAT------CTTTAG---------GCAAAT----ACGTACACA i macFas5.chr5 I 338 C 0 s papAnu2.chr5 16419028 458 + 178775436 CCAGATTTCTGTTAAATGTAGCCTGGTACATATTTTAACTGCTACAACAGTGTATTCAGCATTGAAGGCCAAAAGATCACCAAAGAGCTTGT---GGAATACAGTTAATCCATATTAATGTCAT-CTTCTGCCACTTGATGACATATAATTGGATGTAGAGCCAGTGTTCAAGCAATGTGAGCGCGAGCGAGAGGAGGCAAACAAGGAGAATAATGCCGTAGGATGTGCTTAAGCATAACTTCAAGTAATGTGGAGCAATCATCCAttgctgggcaacagagagaggttTCCATTTAGTGTTTCA-TTTGCATGTGATATGTCATATAATTCAATCAGCCTGCTGGGAAAAGGGA-Accacaaacagaaa-aatgtaaatgcgGCTACAGACCTCAAGAGCACCAGA-------GAGGAAGGGATATTCCACAAATTCATTATGCAT------CTTTAG---------GCAAATACTCACATACACA i papAnu2.chr5 I 352 C 0 s chlSab2.chr27 19903047 458 - 48547382 CCAGATTTCTGTTAAATGTAACCTGGTACATGTTTTAACTGctacgacagtgtattcagcattgaaggccaaaagatcaccaaagagcttgt---ggaatacagttaatccatattaatgtcat-cttctgccacttgatgacatataattggatgtagagccactgttcaagcaatgtgagtgcgagcaagaggaggcaaacaaggagaatcatgccgtaggatgtgcttaagcataacttcaagtaatgtggagcaatcatccattgctgggcaacaGAGAGAGGTTTCCATTTAGTGTTTCA-TTTGCATGTGATATGTCATATAATTCAATCAGCCTGCTGGGAAAAGGGA-ACCACAAACAGAAA-AATGTAAATGCGGCTACAGACCTCAAGAGCACCAGA-------GAGGAAGGGATATTCCACAAATTCATTATGCAT------CTTTAG---------GCAAATACTCACATACACA i chlSab2.chr27 I 370 C 0 s calJac3.chr3 21261604 452 - 190850796 CCAGATTTCTGTTAAATGTAGCCTAGTACATGTTTTAACTGCTACCCCGGTGTATTCAGCATTGAAGGCCAAAAGATCACCAAAGAGCTTGT---GGAATACAGTTAATCCATATTAACGTCAT-CTCCTGCCACTCGTTGATATGTAATTGGATGTAGAGCTGCTGTTCAAGTAA--TGAGTGGG-GTGAGAGGAGACAAACAAGGAGCCTAATGCTGTAGGATGTGCTTAAGCATAACTTCACGCAATGTGGAGCAATCATCCATTGCTGGGCAACAGAGAGAGGATTCCATTTAGTGTTTCATTTTGCATATGATCTGTCATGTAATTCAATCAACCTGCTGGGGAAAGGAA-ACCACAAACAGAAA-AATGTAAATGTGGCTACAGACCTCAAGAGCACCAGA-------GAGGGAGAGATATTCCACAG----ATTATGCAT------TTTCAG---------GCAAATACTCACATAAACA i calJac3.chr3 C 0 C 0 s mm10.chr5 49244355 466 + 151834684 TCAAATTCCT-TTAGATGCAGCCAAGCACAAGTTTTAAGCAACACATCCATGCATTCAGCATTGAAGA-CGGAAGATCACTAGGCTGCTTGG---GGAAAGTACTTAATCCATATTAATGCCAT-CCTCTGCCTTTTGATGAAATCTAATTGGATATAGAGTCACTGTAAGAGTAACTCGAGTGAGGGCAAGAGGAAGCAAACAAGGATGATAATGCCTAAGGATGTGCTTCA-CAGAACACCAAACAACGTGAAGCAAT----CATTGCCAGGCTACAGACAGTGCTTTCAATTTAGTGGCTCATTTTGCATATGATGTACTATATAATCCAATTAGCCTGCTACGGAGAGTGA-ACCACAAACAGGAGCAAAGTAAATACATCTACAGAACTCAGGGGTGTCAT--------GAAGGAGAGGAATTCCACAAATCTATCATGCATGGGC-CTATTAGAGCACACAAGCACATATTCCCTCACTCA i mm10.chr5 C 0 I 399 s canFam3.chr3 3836386 459 - 91889043 tcagatttctgttaaatccagccaggtacatgttttaactgatacaTCAGTTTATTGAGCACTGAAGGCCAAA-GATCACCCAAAAGCTTGC---AGAATACAGTTAATCCATATTAATGCCATCCCTCTGCCACTTGATGATACGTAATTGGATATAGCGTCACTGTACAAATAACTTAA--GGGGGTGAGAGGAAGCACACAAGGAGAATAATGCTGAAGGATGTGCTTAAGCATAACTTCGAGCAACGTGGAGCAATCACCCATTGCTGGGCAACAGAAAGAGGTTTCAACTGAGCATCTCATTTTGCATATGATGCACCATATAATCCAATCAGCCCGCTACGGAAAGGGAGACCACAAACAGAAA-AGTGTAAGCACGGCTACAGGCCTCAGCAGAATAAAA-------GAGAGAGAAATAGTCTATAAAATCATCAAGCATTAGCTTTTTTAG---------GCGAATACACGCAC----- i canFam3.chr3 C 0 C 0 a score=326042.000000 s hg38.chr4_KI270790v1_alt 138954 108 + 220246 GAAAAGTGTGTGTGTGTGCATGCATATTTGTGCATTGCA------ATGTATCTGTTTGTACATAATGATTAGCC----TGTTCATTGTTGAAATTCAGACtaccactgttgttagaaa s panTro4.chr4 21525310 108 + 193495092 GAAAAGTGTGTGTGTGTGCATGCATATTTGTGCATTGCA------ATGTATCTGTTTGTACGTAATGATTAGCC----TGTTCATTATTGAAATTCAGACtaccactgttgttagaaa i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21702781 108 + 198332218 GAAAAGTGTGTGTGTGTGCATGTACATTTGTGCATTGCA------ATGTATCTGTTTGTACATAATGATTAGCC----TGTTTATTATTGAAATTCAGACTACCACTGCTgttagaaa i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20315266 108 - 85365473 GAAAAGTATGTGTGTGTGCATGTACATTTGTGCATTGCA------ATGTACTTGTTTGTACATAATGATTAGCC----CGTTTATTATTGAAATTCAGACtaccactgttgttagaaa i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16779559 112 + 184069350 GAAAAGCATGTGTGTGTGCACGTACATTTGTGCATTGCA------ATGTGTCTGTTTGTACATAATGATTAACCTAAGTGTTTATCATTGAAATTCACACtaccactgttgttagaaa i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20829542 112 + 189454096 GAAAAGCATGTGTGTGTGCACGTACATTTGTGCATTGCA------ATGTGTCTGTTTGTACATAATGATTAACCTAAGTGTTTATCATTGAAATTCACACtaccactgttgttagaaa i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16419486 112 + 178775436 gaaaagcatgtgtgtgtgcatgtacatttGTGCACTGCA------ATGTGTCTGTTTGTACATAATGATTAACCTAAGTGTTTATCATTGAAATTCACACTACCACTGTTGTTAGAAA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19903505 112 - 48547382 GAAAAGCATGTGTGTGTGCATGTACATTTGTGCATTGCA------ATGTGTCTGTTTGTACATAATGATTCACCTAAGTGTTTATCATTGAAATTCACACtaccactgttgttagaaa i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21262056 107 - 190850796 GAAA--CATGTGTATATGCATATACATTTGTGCATTGCA------ATGTGTCTGTCTGTACACGGTGATG---TTAAGTGTTTATCATTAAAATTCAGACtaccactgttgttagaaa i calJac3.chr3 C 0 C 0 s canFam3.chr3 3836845 103 - 91889043 -----------GAGTGCACACATGCACCTATGTATCGCAGCATCTACACATGCATTGGGATATACACGTTAGCC----TGCTTCTCACTGAAATTcagagtatcattgctattaaaaa i canFam3.chr3 C 0 C 0 e mm10.chr5 49244821 399 + 151834684 I a score=1791479.000000 s hg38.chr4_KI270790v1_alt 139062 525 + 220246 cacagacctggggcacactgcctgggttaaaattccatttctacagcttacttctacagcttagcagcataaactcatcttcaggcatcagctttcttatctgcaaaattggtgcaacagatcctgtttcacaggattattatcagg-----atgaaataattaatatgaggtacccaggacaggagttggaacaGTCTTGTACATGTTAGCTAATATCAGTTTTACAATGCCGTAGAAGTAAATATGCTCTCAATTGTGCATGTACATAATCGTGGGTATACAAACACATACATACATATTCATATATCCATCCATCTATTTCTATATAGAT---AAATGAAAAATCCATTGTTGTG---ATATGTGTAATGCTAGTTTA-CATGTTGTAGAGCCTTATGAATTTT--AGAGT-CCAGCAGCATTA---ACAACagctactacttattaaatatttactaggtgtcaggggctgtgcatagcactttacttgcattgtcctgtttaatcctca----------------------------------------------caacat-tcaaagatcgtaggaagtattat s panTro4.chr4 21525418 525 + 193495092 cacagacctggggcacactgcctgggttaaaattccatttctacagcttacttctacagcttagcagcataaactcatcttcaggcatcagctttcttatctgcaaaattggtgcaacagatcctgcttcacaggattattatcagg-----atgaaataattaatatgaggtacccaggacaggagttggaacaGTCTTGTACATGTTAGCTAATATCAGTTTTACAATGCCGTAGAAGTAAATATGCTCTCAATTGTGCATGTACATAATAGTGGGTATACAAACACATACATACATATTCATATATCCATCCATCTATTTCTATATAGAT---AAATGAAAAATCCATTGTTGTG---ATATGTGTAATGCTAGTTTA-CATGTTGTAGAGCCTTATGAATTTT--AGAGT-CCAGCAGCATTA---ACAACagctactacttattaaatatttactaggtgtcaggggctgtgcacagcactttacttgcattgtcctgtttaatcctca----------------------------------------------caacat-tcaaagatcgtaggaagtattat i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21702889 513 + 198332218 cacagacctgaggcacactgcctgggttaaaattccatttctacagcttac----------tagcagcataaactcgtcttcaggcatcagctttcttatctgcaaaattggtgcaacagatcctgcttcacaggattattataagg-----atgaaataattaatatgaggtacccaggacaggagttggaacaGTCTTGTACCTGCTAGCTAATATCAGTTTTACAATGCCATAGAAGTAAATACGCTCTCAATTGTGCATGTACATAATAGTGGGTATACAAACACATACATACATATTCATATATCCATCC----ACTTCTATATAGAT---AAATGAAAAATCCATTGTTGTG---ATATGTGTAATGCTAGTTTA-CATGTTATAGAGCCTTATGAATTTTAAAGAGT-CCAGCAGCATTA---ACAACagctgctacttattaaatatttactaggtgtcagtggctgtgcatagcgctttacttgcattgtcttgtttaatcctca----------------------------------------------caacat-tcaaagatcataggaagtattat i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20315374 527 - 85365473 cacagacctggagcacactgcctgggttaaaattccatttctacagcttacttctacagcttagtggcataaactcatcttcaggcatcagctttcttatctgcaaaattggtgcaacagatcctgcttcacaggattgttataagg-----atgaagtaattaatatgaggtacccaggacaggagttggaacaGTCTTGTACATGTTAGCTAATGTCAGTTTTACAATGCCATAGAAGTAAATATGCTCTCAATTGTGCATGTACATAATAGTGGGTATACAAACACATACATACATATTCATATATCCATCCATCTATTTCTATATAGAT---AAATGAAAAATCCATTGTTGTG---ATATGTGTAATGGTAGTTTA-CATGTTGTAGAGCCCTAAGAATTTTAAAGAGT-CCAGCAGCATTA---ACAACagctactacttactaaatatttactaggtgtcaggggctgtgcataacactttacttgcattgtcctgtttaatcctca----------------------------------------------caacat-tcaaagatcgtaggaagtattat i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16779671 517 + 184069350 cacagacccggggcacactgcctgggttaaaattccatttctacagcttac----------tagcggcataaactcatcttcaggcatcagctttcttatctgcaaaattagtgcaaaagatcccacttcacaggattgttataagg-----atgaaataattaatatgaggtatacaggacaggagttggaacagtcttgtacatgttagcTAACATTAGTTTCACAATGCCACAGAGGTAAACATGCCCTCAATTGTGCACGTACATAATAGTGGGTATACAAACACATACATACATATTTATATATCCATCCATCTATTTCTATATAGAT---AAATGAAAAATCCATTGTCGTG---ATATGTGTAATGCTAGTTTA-CATGTTGCAGAGCCTTATGAATTTTAAAGAGT-CCGGCAGCATTa---acaacagctactacttattaaatatttactaggtgtcaggggctgtgtatagcactttatttgcactgtcttgtttaatcttca----------------------------------------------caacat-tcaaagatcataggaagtattat i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20829654 517 + 189454096 cacagacccggggcacactgcctgggttaaaattccatttctacagcttac----------tagcggcataaactcatcttcaggcatcagctttcttatctgcaaaattggtgcaaaagatcccacttcacaggattgttataagg-----atgaaataattaatatgaggtacacaggacaggagttggaacaGTCTTGTACATGTTAGCTAACATTAGTTTCACAATGCCACAGAGGTAAACATGCCCTCAATTGTGCACGTACATAATAGTGGGtatacaaacacatacatacatatttatatatccatccatctatttctatatagat---aaatGAAAAATCCATTGTCGTG---ATATGTGTAATGCTAGTTTA-CATGTTGCAGAGCCTTATGAATTTTAAAGAGT-CCGGCAGCATTa---acaacagctactacttattaaatatttactaggtgtcaggggctgtgtatagcactttatttgcactgtcttgtttaatcttca----------------------------------------------caacat-tcaaagatcataggaagtattat i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16419598 517 + 178775436 CACAGACCCGGGGCACACTGCCTGGGTTAAAATTCCATTTCTACAGCTTAC----------TAGCGGCATAAACTCATCTTCAGGCATCAgctttcttatctgcaaaattgGTGCAAAAGATCCCACTTCACAGGATTGTTATAAGG-----ATGAAATAATTAATATGAGGTACACAGGATAGGAGTTGGAACAGTCTTGTACATGTTAGCTAACATTAGTTTTACAATGCCACAGAGGTAAACATGCCCTCAATTGTGCACGTACATAATAGTGGgtatacaaacacatacatacatatttatatatccatccatctatttctatatagat---aaatgaaaaatcCATTGTCGTG---ATATGTGTAATGCTAGTTTA-CATGTTGCAGAGCCTTATGAATTTTAAAGAGT-CCGGCAGCATTA---ACAACAGCTactacttattaaatatttactaggTGTCAGGGGCTGTGTATAGCACTTTATTTGCACTGtcttgtttaatcttca----------------------------------------------caacat-tcAAAGATCATAGGAAGTATTAT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19903617 513 - 48547382 cacagacctggggcacactgcctgagctaaaattccatttctacagcttac----------tagcggcatacactcatcttcaggcatcag----cttatctgcaaaattggtgcaaaagatcccactttgcaggattgttaaaagg-----atgaaataagtaatatgaggtacacaggacaggagttgaaacaGTCTTGTACATGTTAGCTAATATTAGTTTTACAATGCCACAGAAGTAAACATGCCCTCAATCGTGCATGTACATAATAGTGGGtatacaaacacatacatacatatttatatatccatccatctatttctatatagat---aaatGAAAAATCCATTGTCGTG---ATACGTGTAATGCTAGTTTA-CATGTTGTAGAGCCTTATGAATTTTAAAGAGT-CCAGCAGCATTa---acaacagctactacttattaaatatttactaggtgtcaggagctgtgcatagcactttacttccattgtctcgtttaatcttca----------------------------------------------caacat-tcaaagatcataggaagtattat i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21262163 511 - 190850796 cacagacctggggcacattgcctgggttaaaattccatttccacagtttat----------tagcagcataacctcatcttcagacatcagttttcttatctgcaaaattggtgcaacagatcctacttcacagaattattataagg-----atgaattaattaatatgaagtacacaggacagcagttggcacagtcttaaacacgttagctaatattagtCCTATAATACCGTAGAAGTAAATATTCTCTCAATTGTGCATGCACATAATAGTGGGTATACAAACACACACACAAATATTCAGGTATTCATCC----ATTTCTATACAGAT---AAATGAAAAATCCATTATCCTG---ATATGTGTAATGCTAGTTTA-CATGTTGTAAAGCCTTGTGAATTTTAAAGAGT-CCAGCAGCTTGa---acagcagccac--cttgttaaatatttaccaggtgtcaggggctgcgagtagcactttacttgcatcatcttgtttaatcctca----------------------------------------------caacag-tcaaagaacataggaagtattat i calJac3.chr3 C 0 C 0 s mm10.chr5 49245220 499 + 151834684 cacctaccttgggaagagtacctgggttgatattctgcctgagcagtttac----------tgacagcatgatatcatctttgggcctcagttttctagtctttaatatgtgcacagtaaagcctttctcttagaa---ttatAAAG-----TTGAATTGATTACCATGGAGAACATAGGAT-GGGTCTAAACCATTCACATGTTTGTTAGTTTACAT---TTTTATTTTGTTACA----TAAATATGCCCTCAGTTGTACATGTACATGCAAATGATTCCATAAG-ACAGACTAGTGCAGTCTTATTTAAATAAACCTATTTCCATCAGAATCGGATAGCAGAAACTCATTTTCTCATCTCTGCATGCAATGCTTTCTGAGTAGGTTATGGATCCCTGTGAGTTTTAAAAGCT-CCTGCACCATCA---TCAGCA-CTGC-----------CATTTCCTAGTTTTCAAAGACAATGC-TATCACTTCTCTTGCTCTATCACATTTAATCCTCT----------------------------------------------CAGTGT-TCAAAGAATATACCAAGCATTAT i mm10.chr5 I 399 C 0 s canFam3.chr3 3836948 530 - 91889043 cacagaactggggcaaaatgtctgagtgggaattccacttctgcagcttaa----------tagctatgtgttctcatctgtgggcctcgctttttgcatttgaaaaatcgtgatagcagaatcta-tgcacaggattattatcaggaacctacgagttacttactgggaagtacccaggatagggctcagcacag---------agtTGGATAATCTTATTTTTCTGATGCTACAGACGTAAATGTGCTCTCGGTTGTGCACGTATAGAATAATGGCTTTAGAGACACAT--------------------------CTCTTTCTATACAGGT---AAATGGAAAACCTATTGTGCTG---ATG-----AATGCTAGTTTA-CATGTTGCAAATCCTTAGGAATTTTATAAAGTGCCAGCGGCATCAACTACAACagctaccacatattgaatatttactaggtgct--gggctgtacttaatgctttactcgtattaccttgttgagtcctcagagcccccaaataatgtagcattattgcaagtcccataaaaaatagcaacatataaaaaatagtgaaagggattat i canFam3.chr3 C 0 I 155 a score=692140.000000 s hg38.chr4_KI270790v1_alt 139587 181 + 220246 tataagcacag-----------------------------------------------taaaggattagttacttgcctgtggtaacaaaacaagc-aggcagaggaactggacttagaatccaaatccaaatctct-cagtctccagagactgaatttttGTGCTTGATGCTGTTATTTTTAT-----TTTTTGCTCCACTTATTAACTTAGATGACATGTCACACCTGAATAG s panTro4.chr4 21525943 181 + 193495092 tataagcacag-----------------------------------------------taaaggattagttacttgcctgtggtaacaaaacaagc-aggcagaggaactggacttagaatccaaatccaaatctct-cagtctccagagactgaatttttGTGCTTGATGCTGTTATTTTTAT-----TTTTTGCTCCACTTATTAACTTAGATGACATGTCACACCTGAATAG i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21703402 181 + 198332218 tataagcacat-----------------------------------------------taaaggattagttacttgcctgtggtaacaaaacaagc-aggcagaggaactggacttagaatccaaatccaaatctct-cagtctccagagactgaatttttGTGCTTGATGCTGTTATTTTTAT-----TTTTTGCTCTACTTATTAACTTAGATGGCATGTCACTCCTGAATAG i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20315901 181 - 85365473 tataagcacag-----------------------------------------------taaaggattagttacttgcctgtggtaacaaaacaagc-aggcagaggaactggacttagaatccaaatccaaatctct-cagtctccagagactgaatttttGTGCTTGATGCTGTTATTTTTAT-----TTTTTGCTCTACTTATTAACTTAGATGACATGTCACACCCGAATAG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16780188 181 + 184069350 tataagcacag-----------------------------------------------taaaggattagttactttcctgtggtaacaaatcaagc-aggcagaggaactggaattagaatccaaattcaaatctct-cagtttccagagactgaatttttGTGCTTGATGCTGTTATTTTTAT-----TTTTTGCTCTACTTATTAACTTAGATGACATGTCACATCTGAATAG i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20830171 181 + 189454096 tataagcacag-----------------------------------------------taaaggattagttactttcctgtggtaacaaatcaagc-aggcagaggaactggaattagaatccaaattcaaatctct-cagtttccagagactgaatttttGTGCTTGATGCTGTTATTTTTAT-----TTTTTGCTCTACTTATTAACTTAGATGACATGTCACATCTGAATAG i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16420115 181 + 178775436 TATAAGCACAG-----------------------------------------------TAAAGGATTAGTTACTTGCCTGTGGTAACAAATCAAGC-AGGCAGAGGAACTGGAATTAGAATCCAAATTCAAATCTCT-CAGTTTCCAGAGACTGAATTTTTGTGCTTgatgctgttatttttat-----tttttgctatacTTATTAACTTAGATGACATGTCACATCTGAATAG i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19904130 181 - 48547382 tataagcacag-----------------------------------------------taaaggattagttacttgcctgtggtaacaaatcaagc-aggcagaggaactggaattagaatccaaattcaaatctct-cagtttccagagactgaatttttGTGCTTGATGCTGTTATTTTTAT-----TTTTTGCTCTCCTTATTAACTTAGATGACATGTCACATCTGAATAG i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21262674 181 - 190850796 tataagcacag-----------------------------------------------taaaggattagcaacttgcctgtggtaacaaaacaagc-aggcagaggaactggtattagaatccgaatccaaatctct-cagactccagagactgaatttttGTGCTTGATGCTGTTATTTTTAT-----TTTTTGCTCCAGTTATTAACTTAGATGACATGTCACACCTGAATAG i calJac3.chr3 C 0 C 0 s mm10.chr5 49245719 177 + 151834684 TTTGAACAT-G-----------------------------------------------TAAATTACTAAGTTTTTCCATGC----------CACACGAGACAGAAAAAATGAAGTTAGACTAGAAATCCCAACCAGTGAAGTCTACAAAACCTGAACATTTGCTCTCAGTGCTATTATTTTTATGTTTATTTTTGTACTAGTTAGTAAATCAGATGGCAAGCCATCCCTAAATAT i mm10.chr5 C 0 I 235 s canFam3.chr3 3837633 226 - 91889043 gatgagcactgggtgttatgctatatgtgggcaaattgaactccaataaaaatatatttaaaaaattagcaacttgtccttggtaacaaaacaagt-aaatggaggaactcgaattagaatccaaatccaattctct-cagtctccagag-cTAAATTTTTGTGCTTGATGCTGTTATTTTTA------CCTTTGCACTATTTATCAACTTAGATGTCATGCCATAACTGAAAAG i canFam3.chr3 I 155 C 0 a score=293009.000000 s hg38.chr4_KI270790v1_alt 139768 89 + 220246 GTTGAAGAAGTCCTCATTTAGGAAACTCAAATAAGTTTCTATTAATACTAGAAAGTACTC--GAGTTAATTTCAACAAACAAATCTCTTAT s panTro4.chr4 21526124 89 + 193495092 ATTGAAGAAGTCCTCATTTAGGAAACTCAAATAAGTTTCTATTAATACTAGAAAGTACTC--GAGTTAATTTCAACAAACAAATCTCTTAT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21703583 89 + 198332218 ATTGAAGAAGTCCTCATTTAGGAAACTCAAATAAGTTTCTATTAATACTAGAAAGTACTC--GAGTTAATTTCCACAAACAAATCTCTTAT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20316082 89 - 85365473 ATTGAAGAAGTCCTCATTTAGGAAACTCAAATAAGTTTCTATTAATACTAGAAAGTACTC--GAGTTAATTTCTACAAAGAAATCTCTTAT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16780369 91 + 184069350 ATTGAAGAAGTCCTCATTTAGGAAACTCAAATAAGTTTCTATTAATACTAGAAAGTACTCTTGAGTTAATTTCTACAAACGAATCTCTTAT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20830352 91 + 189454096 ATTGAAGAAGTCCTCATTTAGGAAACTCAAATAAGTTTCTATTAATACTAGAAAGTACTCTTGAGTTAATTTCTACAAACGAATCTCTTAT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16420296 91 + 178775436 ATTGAAGAAGTCCTCATTTAGGAAACTCAAATAAGTTTCTATTAATACTAGAAAGTACTCTTGAGTTAATTTCTACAAACGAATCTCTTAT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19904311 91 - 48547382 ATTGAAGAAGTCCTCATTTAGAAAACTCAAATAAGTTTCTATTAATACTAGAAAGTACTCTTGAGTTAATTTCTACAAACGAATCTCTTAT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21262855 80 - 190850796 ATT---GAAGTCCTCATTTAGGGAACTC----AAGTTTCTATTAATACTAGAAAATCTTCTTGAGTTAATTTCTACA----AATCTCTTCT i calJac3.chr3 C 0 C 0 s canFam3.chr3 3837859 91 - 91889043 ATAAAAAATATCCACACTTAGGATCCTTGAATAAGTTTCTATTAATACAGGGCAATACACTTGAGCTAATTTCTACAAAGCAGTTCCTTAT i canFam3.chr3 C 0 C 0 e mm10.chr5 49245896 235 + 151834684 I a score=958865.000000 s hg38.chr4_KI270790v1_alt 139857 283 + 220246 TTGCCATTAA-CC-----TATTTATATCCTAGGATAGTAGTGCTTGGAAAAATGTTAC-----AACAAAGAATAGATAGCTTTATAATGAAAATC--AGAAGTATTTGCTCAATCAAATG-TGGATAAACTAATACTTTCTGCTCATTCACACAAGAAGCAGTCAATTTACA-GTTAAGTATACAGAATGAAATGTAATAAATTTCTCTAGCATACACACTTCC---CCAAACCACACAGCCCTCAGAGTATCATATAATTAG-----T-----TCC----TTGCCACTTGCTGACCATTTACTTTTGCAATTGT s panTro4.chr4 21526213 283 + 193495092 TTGCCATTAA-CC-----TATTTATATCCTAGGATAGTAGTGCTTGGAAAAATGTTAC-----AACAAAGAATAGATAGCTTTATAATGAAAATC--AGAAGTATTTGCTCAATCAAATG-TGGATAAACTAATACTTTCTGCTCATTCACACAAGAAGCAGTCAATTTACA-GTTAAGTATACAGAATGAAATGTAATAAGTTTCTCTAGCATACACACTTCC---CCAAACCACGCAGCCCTCAGAGTATCATATAATTAG-----T-----TCC----TTGTCACTTGCTGACCATTTACTTTTGCAATTGT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21703672 283 + 198332218 TTGCCATTAA-CC-----TATTTATATCCTAGGATAGTAGTGCTTGGAAAAATGTTAG-----AACAAAGAATAGATAGCTTTATAATGAAAATC--AGAAGTATTTGCTCAATCAAATG-TAGATAAACTAATACTTTCTGCTCATTCACACAAGAAGCAGTCAATTTACA-GCTGAGTATACAGAATGAAATGTAATAAATTTCTCTAGCATACACACTTCC---CCAAACCACGCAGCCCTCAGAGTATCATATAATTAG-----T-----TCC----TTGTCACTTGATGACCATTTAGTTTTGCAATTGT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20316171 283 - 85365473 TTGCCATTAA-CC-----TATTTATATCCTAGGATAGTAGTGCTTGGAAAAATGTTAC-----AACAAAGAATAGATAGCTTTATAATGAAAATC--AGAAGTATTTGCTCAATCAAATG-TGGATAAACTAATACTTTCTGCTCATTCACACAAGAAGCAGTCAATTTATA-GTTGAGTGTACAGAATGAAATTTAATAAATTTCTCTAGCATACACACTTCC---CCAAACCACGCAGCCCTCAGAGTATCATATAATTAG-----A-----TCC----TTGTCACTTGCTGACCATTTACTTTTGCAATTGT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16780460 283 + 184069350 TTCCCATTAA-CC-----TATTTATATCCTAAGATAGTAGTACTAGGAAAAATGTTAG-----AACAAAGAATAGGTAGCTTTATAATGAAAATC--AGAAGTATTTGCTCAATCAAATG-TGGATAAACTAATACTTTCTGTTCATTCACACAAGAAGCAGTCAGTTTACA-GTTGAGTATACAGAATGAAATTTAATAAATTTCTCTAGCATACACACTTCC---CCAAACCACACAGCCCTCAGAGTATCATATAATGAG-----T-----TCT----TTGTCACTTACTGACCATTTGCTTTTGCAATTGT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20830443 283 + 189454096 TTCCCATTAA-CC-----TATTTATATCCTAAGATAGTAGTACTAGGAAAAATGTTAG-----AACAAAGAATAGGTAGCTTTATAATGAAAATC--AGAAGTATTTGCTCAATCAAATG-TGGATAAACTAATACTTTCTGTTCATTCACACAAGAAGCAGTCAGTTTACA-GTTGAGTATACAGAATGAAATTTAATAAATTTCTCTAGCATACACACTTCC---CCAAACCACGCAGCCCTCAGAGTATCATATAATGAG-----T-----TCT----TTGTCACTTACTGACCATTTGCTTTTGCAACTGT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16420387 283 + 178775436 TTCCCATTAA-CC-----TATTTATATCCTAAGATAGTAGTACTAGGAAAAATGTTAG-----AACAAAGAATAGGTAGCTTTATAATGAAAATC--AGAAGTATTTGCTCAATCAAATG-TGGATAAACTAATACTTTCTGTTCATTCACACAAGAAGCAGTCAGTTTACA-GTTGAGTATACAGaatgaaatttaataaatttctCTAGCATACACACTTCC---CCAAACCACGCAGCCCTCAGAGTATCCTATAATGAG-----T-----TCT----TTGTCACTTACTGACCATTTGCTTTTGCAATTGT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19904402 283 - 48547382 TTCCCATTAA-CC-----TATTTATATCCTAAGATAGTAGGGCTAGGAAAAATGTTAG-----AACAAAGAATAAGTAGCTTTATAATTAAAATC--AGAAGTATTTGCTCAATCAAATG-TGGATAAACTAATACTTTCTGCTCATTCACATGAGAAGCAGTCAGTTTACA-GTTGAGTATACAGAATGAAATTTAATAAATTTCTCTAGCATACACACTTCC---CCAAACCACGCAGCCCTCAGAGTATCATATAATGAG-----T-----TCT----TTGTCACTTGCTGACCATTTGTTTTTGCAATTGT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21262935 281 - 190850796 TTGCCATTAA-CT-----TATTTATATCCTAGGATAG-AGT-TTAGAAAAAATGTTAG---------AAGAATAGGTAGTTTTATAATGAATACC--TGAAGTATTTGCTCAATCAAATG-TGAATAAACTGATAGTTTCTGCCCATTCACGCCAGAAGCATTCCATTTATA-GTTCAGTATACAGAATGAAATTTAATAAATTTATCTAGTATAAACACTTCC---CCAAACCACGCAGCCCTCAGAGTATCATATAATTAG-----T-----TCCTTGGTTGTCACTTGCTGACCACTTACTTTTGCAATTGT i calJac3.chr3 C 0 C 0 s mm10.chr5 49246131 269 + 151834684 TTGTCATTAGTTC-----TTATTATAATCTAGGTTTTCAACAGCAGCAACAATGTCATGCAGCAACAACAA--AAATGATTTTAAAGTGTAAAAC--CTAAGTATCATTTGAAGCACACACCGGGTAGAATAATTATTACTTC----TTCCACAAGAAGTTCTCAGTATAT--GTTAAG-ACAC------------------TATCTCTAGGGTGCACACTTCC---TCAAACCAAGCAGCTCTATTGGTATGAAAGAGTTAA-----TAGTTGTGC----CCATCATTTGCTGACTGTGTGTATATGTGATTGT i mm10.chr5 I 235 I 558 s canFam3.chr3 3837950 297 - 91889043 TTACCATTAA-TCTCTTTTATTTATGACCTAGAATAGAAATGTTTGGAAAAATCTTAG-----AACAGAGTATAGCAAGTGTTAAAGTAGAAGACCTCGAATTCTTTGTTCAACCAGATGCTGCATAAACCACTACTTTCTGCCCATTCACATGAGAAATGGTCAATGTATAGGGAAAGGATCCAAAATGAAACTTAATAAACTTCTCCATTATATACATGCCCCTTCCAAACCCAGCTGC-CTCAGAGCATG--AGAGTGAGCCACCT-----TGT----TTGCTATCTGCTGAGTATGCTTTTTACTAATTGT i canFam3.chr3 C 0 C 0 a score=1037172.000000 s hg38.chr4_KI270790v1_alt 140140 328 + 220246 -TACTTAACTGCCTTAAtcgtgtacctggtgcaagggcatttagtcaagaggatgcaatctaaagtgtattccacacttccactcgcaatggcaggtg-cctaggacatagatgcattcacctaggaaaaggagtgtct----tttttctaatcagcactaaaggcTGATCTTTGCTAACAAATACCTTGATTAAAATGTTTTTT---TTTTTTATCTAAAGATACCTAAAGTTGTTTGATACCTCTAGATAAaagggctgtgccatcttgttc-atcatca-cccaagtacctggggaaacactgggctcatagcaagtgttaagtaaatgtttCATT s panTro4.chr4 21526496 327 + 193495092 -TACTTAACTGCCTTAAtcgtgtacctggtgcaagggcatttagtcaagaggatgcaatctaaagtgtattccacacttccactcgcaatggcaggtg-cctaggacatagatgcattcacctaggaaaaggagtgtct----tttttctaatcagcactaaaggcTGATCTTTGCTAACAAATACCTTGATTAAAATGTTTTTT---TTTTA-ATCTAAAGATACCTAAAGTTGTTTGATACCTTTAGATAAaagggctgtgccatcttgttc-atcatca-cccaagtacctggggaaacactgggctcatagtaagtgttaagtaaatgtttAATT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21703955 330 + 198332218 -TACTTAACTGCCTTAATAgtgtacctagtgcaagggcatttagtcaaaaggatgcaatctaaagtgtattccacacttccactcgcaatggcaggtg-cctaggacatagacgcattcacctaggaaaaggggtgtct----tttttctaatcagcactaaaggcTGATCTTTGCTAACAAATACCTTGATTAAAATGTTTTTT-TGTTTTTTATCTAAAGATATCTAAAGTTGTTTGATACCTTTAGATAAaagggctgtgccatcttgttc-atcatca-cccaagtacctggggaaacactgggctcatagtaagtgttaagtaaatgtttAATT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20316454 331 - 85365473 -TACTTAACTGCCTTAAtcgtgtacctagtgcaagggcatttagtcaaaagcatgcaatctaaagtgtattccacacttccacttgcaatggcaggtg-cctaggacatagatgcattcacctaggaaaaggggtgtct----tttttctaatcagcactaaaggcTGATCTTTGCTAACAAATACCTTGATTAAAATGTTTTTTTTGTTTTTTATCTAAAGATATCTAAAGTTGCTTGATACCTTTAGATAAaagggctgtgccatcttgttc-atcatca-cccaagtacctggggaaacactgggctcatagtaagtgttaagtaaatgtttAATC i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16780743 322 + 184069350 -CACTTAACTGCCTTAATCAtgtacctagtgcaagggcacttaatcaagaggatgcaatctaaagtatatttcacactcccactcgcagtggcaggtg-cctaggacatagatgcattcacctaggaaaagaggtgtca----tttttctaatcagcactaaaggcTGATCTTTGCTAACAAACACCTTGATAAAAATGTTTCTT-----TTTTATCTAAAGATATCTAAAGTTGTTTGATACCTTTAGATAAaagggctgtgccatcttgttc-ctcatca-tccaagtacctggggaaacactgggctcatagtaagtgctaagtaaatgttt---- i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20830726 322 + 189454096 -CACTTAACTGCCTTAATCATGTACCTAGTGCAAGGGCACTTAATCAAGAGGATGCAATCTAAAGTATATTTCACACTCCCACTCGCAGTGGCAGGTG-TCTAGGACATAGATGCATTCACCTAGGAAAAGAGGTGTCA----TTTTTCTAATCAGCACTAAAGGCTGATCTTTGCTAACAAACACCTTGATAAAAATGTTTCTT-----TTTTATCTAAAGATATCTAAAGTTGTTTGATACCTTTAGATAAaagggctgtgccatcttgttc-ctcatca-tccaagtacctggggaaacactgggctcatagtaagtgctaagtaaatgttt---- i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16420670 323 + 178775436 -CACTTAACTGCCTTAATCATGCACCTAGTGCAAGGGCACTTAATCAAGAGGATGCAATCTAAAGTATATTTCACACTCCCActcgcagtggcaggtg-cctaggACATAGATGCATTCACCTAGGAAAAGGGATGTCA-T--TTTTTCTAATCAGCACTAAAGGCTGATCTTTGCTAACAAACACCttgataaaaatgtttctt-----ttttatctaaagatatctAAAGTTGTTTGATACCTTTAGATAAAAGGGCTGTGCCATCTTGTTC-CTCATCA-TCCAAGTATCTGGGGAAACACTGGGCTCATAGTAAGTGCTAAGTAAATGTTT---- i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19904685 322 - 48547382 -CACTTAACTGCCTTAAtcgtgtacctagtgcaagggcacttagtcaagaggatgcaatctaaactatatttcacacttccactcgcagtggcaggtg-cctaggacacagatgcattcgcctaggaaaaggggtgtcg----tttttctaatcagcactaaaggcTGATCTTTGCTAACAAACACCTTGATAAAAATGTTTCTT-----TTTTATCTAAAGATATCTAAAGTTGTTTGATACCTTTAGATAAaagggctgtgccatcttgttc-ctcatca-cccaagtacctggggaaacactgggctcatagtaagtgctaagtaaatgttt---- i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21263216 323 - 190850796 -CACTTAACTGCCTaaatcgtgtacctagttcaagggcacttagttaagagaatgcaatctaaagtgtatttcacacttccactcacgatggcaggtg-cctaggacacagatgcattcactcaggagaaggggtatcttt--tttttctaatcagcactaaggGATGATCTTTGCTAACAAACACGTTGATAAAAATGTTTATC-----TTTTATCTAAAGGTATCTAAAATTCTTTGATACCTTTAGATAAaaggactgtgccatcttgttc-ccc------ccaagtacctggggaaacagtgggttcacagtaagtgctaaataaatgtttgatt i calJac3.chr3 C 0 I 4 s canFam3.chr3 3838247 278 - 91889043 CAATTTAATTGCCTTAATCGtgtgcctagtgcaagggcacttagtcagaaggatgcaatctgaaatccattacacact-ccactcccgatagtgtgtgtcctgggatagagccacatcacccaagagaaaggggtgtgttttGTTTTTCTGATCAAAAGGAAGGAGTGATTCTT-CTAGCAAACACCTTG--------------C---------ATCCATAG------------------------------------CTATGCCAACTTGTCCAACCATCACCCCAAGTACCTGGGGAAACAGGTGGTATCTAGTGGGTCCTAAATAAATGTCTGATT i canFam3.chr3 C 0 C 0 e mm10.chr5 49246400 558 + 151834684 I a score=641709.000000 s hg38.chr4_KI270790v1_alt 140468 278 + 220246 AGAAAACTGggccgggtatggtggctcatgcctgtaatcccagcactttgggacgccgaggcaggcagatcacgaggtcaggagatcgagaccatcctggctaacatggtgaaaccccgtctctactaaaaaatacaaaaaattagtcgggtgtggtggctgacgcctgtagtcccagctacttgggaggctgaggcaggagaatggcgtgaacctgggaggcggagcttgcagtgagcagagatcgcgccactgcactccagcctgggtgacagagc s panTro4.chr4 21526823 278 + 193495092 AGAAAACTGggccgggtatggtggctcatgcctgtaatcccagcactttgggacgccgaggcaggcagatcacgaggtcaggagatcgagaccatcctggctaacatggtgaaaccccgtctctactaaaaaatacaaaaaattagtcgggcgtggtggctgacacctgtagtcccagctacttgggaggctgaggcaggagaatggcgtgaacccgggaggcggagcttgcagtgagcagagatcgcgccactgaactccagccagggtgacagagc i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21704285 278 + 198332218 AGAAAACTGggccaggtgcggcggctcatgcttgtaatcctagcactttgggaggtcaaggcaggtggatcacaaggtcaggagatcgagaccatcctggctaacacagtgaaaccccgtctctactaaaaaatacaaaaaattagccgggcgtggtggctgacgcctgtagtcccagctactcgggaggctgaggcaggagaacggtgtgaacccaggaggtggagcttgcagtgagcagagatcatgccattgcactccatcctgggcgatagagc i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20316785 278 - 85365473 AGAAAACTGggctgagtgtggtggctcatgcctgtaatcccagcactttgggaggccaaggcaggcggatcacgaggtcaggagatcaagaccatcctggctaacacagtgaaactccgtctctactaaaaaatacaaaaaattagccgggcgtggtggctgacgcctgtagtcccagctactcgggaggcagaggcaggagaatggcgtgaacccaggaggcggagattgcagtgagcagagatcgcgccactgcactccatcctgggtgacagagc i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16781065 278 + 184069350 AGAAAACTGggctgggcgcggtggctcacgcctgtaaccccaacactttgggaggccgaggtaggtggatcatgaggtcaggagattgagaccatcctggctaacatggtgaaaccctgtctctactaaaaaatacaaaaaattagccgggtgtggtggcagagacctgtagtcccagctactcgggaggctgagacaggagaatggtgtgaacccaggagacggagcttgcagtgagccgagatcacgccagggcactccagcctgggcgacagagc i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20831048 278 + 189454096 AGAAAACTGggctgggcgcggtggctcacgcctgtaaccccaacactttgggaggccgaggtaggtggatcatgaggtcaggagattgagaccatcctggctaacatggtgaaaccctgtctctactaaaaaatacaaaaaattagccgggtgtggtggcagagacctgtagtcccagctactcgggaggctgagacaggagaatggtgtgaacccaggagacggagcttgcagtgagccgagatcacgccagggcactccagcctgggcgacaaagc i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16420993 278 + 178775436 AGaaaactgggctgggcacggtggctcacgcctgtaaccccaacactttgggaggctgaggtaggtggatcatgaggtcaggagattgagaccatcctggctaacatggtgaaaccctgtctctactaaaaaataaaaaaaattagccaggcgtggtggcagagacctgtagtcccagctacttgggaggctgagacaggagaatggtgtgaacccaggagacggagcttgcagtgagccgagatcacaccagggcactccagcctgggtgacagagc i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19905007 278 - 48547382 AGAAAACTGggctgggcacggtggctcatgcctgtaatcccaacactttgggaggctgaggtaggtggatcacaaggtcaggagattgagaccatcccggctagcatggtgaaaccccgtctctactaaaaaacacaaaaaattagcctggcatggtggcggatgcctatagtcccagctactcgggaggctgagacaggagaatggcatgaacctgggagacggagcttgcagtgagctgagatcactccagggcactccagcctgggcgacagagc i chlSab2.chr27 C 0 C 0 e mm10.chr5 49246400 558 + 151834684 I e calJac3.chr3 21263539 4 - 190850796 I e canFam3.chr3 3838525 0 - 91889043 C a score=36689.000000 s hg38.chr4_KI270790v1_alt 140746 21 + 220246 gagactctgtctc------aaaaaaaa s panTro4.chr4 21527101 21 + 193495092 gagactctgtctc------aaaaaaaa i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21704563 21 + 198332218 gagactgtgtctc------aaaaaaaa i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20317063 19 - 85365473 gagac--tgtctc------aaaaaaaa i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16781343 21 + 184069350 gagactccgtctc------aaaacaaa i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20831326 21 + 189454096 gagactccgtctc------aaaacaaa i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16421271 27 + 178775436 gagactccgtctcaaaacaaaaacaaa i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19905285 27 - 48547382 gagactccgtctcaaaacaaaaacaaa i chlSab2.chr27 C 0 C 0 s canFam3.chr3 3838525 17 - 91889043 GAAATTTTTTTTA------AAAA---- i canFam3.chr3 C 0 C 0 e mm10.chr5 49246400 558 + 151834684 I e calJac3.chr3 21263539 4 - 190850796 I a score=2174.000000 s hg38.chr4_KI270790v1_alt 140767 12 + 220246 aa-------------------ggaaagaaaa s panTro4.chr4 21527122 10 + 193495092 ---------------------ggaaagaaaa i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21704584 18 + 198332218 aaaaaaa-------------gaagaagaaaa i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20317082 17 - 85365473 aaaaaaa--------------aagaagaaaa i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16781364 31 + 184069350 aacaaaaacaacaaaacaaaaacaaacaaac i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20831347 31 + 189454096 aacaaaaacaacaaaacaaaaacaaacaaac i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16421298 31 + 178775436 aacaaaaacaacaaaacaaaaacaaacaaac i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19905312 31 - 48547382 aacaaaaacaacaaatcaaaaacaaacaaac i chlSab2.chr27 C 0 C 0 s mm10.chr5 49246958 12 + 151834684 -------------------AATGGAAGAAAA i mm10.chr5 I 558 I 4 s canFam3.chr3 3838542 7 - 91889043 -----------------------TGGGAAA- i canFam3.chr3 C 0 C 0 e calJac3.chr3 21263539 4 - 190850796 I a score=4035144.000000 s hg38.chr4_KI270790v1_alt 140779 1072 + 220246 agaaaaCTG-TATGACTAGTCTGCAAAGGGTGGAAAGAAAAATTG-CTCCTCATTCT---TTTTTTCTTTCCTATACTCTGCATACTTAAGGGTTGATGCTACTTCCTA-AATGTCCTCACCCAGAATATCTGTGCAATGCCAATAAAACGAAAGACCCAGGG--GCCTAATGTACTATTCCATCCAGAAGGCAGCAAGTATA--TGTGTACAGCATAACAAATAACAAGATTAGATCCCATATGAGCTCTCTTTTGCATAATGAAATTCCACATGTTAAAATGCAGATTTATTTTAAGCCCTAGAAGTGCTGACCATATGCCTCGGTGGCTGAGGAGATGGCTACTTAATAGATAATCTGCAATGCAAGCCAAAGAACTAATCATGGCCATCTGATCATCATGCCCCATCAAAAGCC-GAAATGAGGAGACAGGGAACAGAGCCAGAAACTGCCAACACATTTTACAAGCAGGGAGAGACCACGAGTCTAAAGGGAGGGCAGGAGGGATAAAATGAACATCT-TCCTACCCTAAGCAACATAACAAAATAATAACAAT---AAGAACATGGCTGTTTTAGAGTATATTTGTGAT----AAAACACATGCTCCACTAAATGTATTATAACTATACTCTTA-----TTTAATCTCCTTTCATTGGGGAAGTTGATGAGAATATTGACATCACATAAAGGTAGAATATTTTCCAAAACATATATCCTAAAAGGTGGGGTCCCTGATCTTAATTCTGTTCACAGAACCCAAGCTTCTGATCACtatcctacagaag---------atggcacatcatgcatgctaaataaatgcttgttaattgaatgaGCATATAACACAGAGAAATCAAG---TGTTTGTCATTAAGTGCATTTAACAGATCACCATGCATAAATTTTTGCCCCAA--ATGTGTTCTGCAAAAT--ATTGATTATTATGAATGGGATGGCTCTAAAATATCTTGGGCATCTCTCTGCCACCTTACTAGTGGGTAGAGGACAGTTTATCCTTAACTGATGACTGAGAATCAGGA-GCTAAGCTGCATGTCTTTGAACTACTTAAT-CTCtgtattagtttgctagtgctgctataa s panTro4.chr4 21527132 1072 + 193495092 agaaaaCTG-TATGACTAGTCTGCAAAGGGTGGAAAGAAAAATTG-CTCCTCATTCT---TTTTTTCTTTCCTGTACTCTGCATACTTAAGGGTTGATGCTACTTCCTG-AATGTCCTCACCCAGAATATCTGTGCAATGCCAATAAAACGAAAGACCCAGGG--GCCTAATGTACTATTCCATCCAGAAGGCAGCAAGTATA--TGTGTACAGCATAACAAATAACAAGATTAGATCCCATATGAGCTCTCTTTTGCATAATGAAATTCCACATGTTAAAATGCAGATTTATTTTAAGCCCTAGAAGTGCTGACCATATGCCTCGGTGGCTGAGGAGATGGCTACTTAATAGATAATCTGCAATGCAAGCCAAAGAACTAATCATGGCCATCTGATCATCATGCCCCATCAAAAGCC-GAAATGAGGAGACAGGGAACAGAGCCAGAAACTGCCAACACATTTTACAAGCAGGGAGAGACCACGAGTCTAAAGGGAGGGCAGGAGGGATAAAATGAAAATCT-TCCTACCCTAAGCAACATAACAAAATAATAACAAT---AAGAACATGGCTGTTTTAGAGTATATTTGTGAT----AAAACACATGCTCCACTAAATGTACTATAACTATACTCTTA-----TTTAATCTCCTTTCATTGGGGAAGTTGATGAGAATATTGACATCCCATAAAGGCAGAATATTTTCCAAAACATATATCCTAAAAGGTGGGGTCCCTGATCTTAATTCTGTTCACAGAACCCAAGCTTCTGATCACtatcctacagaag---------atggcacatcatgcatgctaaataaatgcttgtttattgaatgaGCATATAACACAGAGAAATCAAG---TGTTTGTCATTAAGTGCATTTAACAGATCACCATGCATAAATTTTTGCCCCAA--ATGTGTTCTGCAAAAT--ATTGATTATTATGAATGGGATGGCTCTAAAATATCTTGGGCATCTCTCTGCCACCTTACTAGTGGGTAGAGGACAGTTTATCCTTAACTGATGACTGAGAATCAGGA-GCTAAGCTGCATGTCTTTGAACTACTTCAT-CTCtgtattagtttgctagtgctgctataa i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21704602 1071 + 198332218 agaaAACTG-TATGACTAGTCTGCAAAAGGTGGAAAGAAAAATTG-CTCCTCATTC----CTTTTTCTTTCCTGTACTCTGCATAGTTAAGGGTTGATGCTACTTCCTA-AATGTCCTCACCCAGAATATCTATGCAATGCCAATAAAACGAAAGACCCAGGG--GCCTAATGTACTATTCCATCCAGAAGGCAGCAAGTATA--TGTGTACAGCATAACAAATAACAAGATTAGACCCCATATGAGCTCTCTTTTGCATAATGAAATTCCACATGTTAAAATACAGATTTATTTTAAGCCCTAGAAGTGCTGACCATATGCCTCGGTGGCTGAGGAGATGGCTACTTAATAGATAATCTGCAATGCAAGCCAAAGAACTAATCATGGCCATCTGATCATCATGCCCCATCAAAAGCC-GAAATGAGGAGACAGGCAACAGAGCCAGAAACTGCCAACACATTTTACAAGCATGGAGAGACCAAGAGTCTAAAGGGAGGGCAGGAGGGATAAAATGAACATCT-CCCTACCCTAAGCAACATAACAAAATAATAACAAT---AAGAACATGGCTGTTTTAGAGTATATTTGTGAT----AAAACACATGCTCCACTAAATGCATTATAACTATACTCTTA-----TTTAATCTCCTTTCATTGGGGAAGTTGATGAGAATATTGACATCCCATAAAGGTAGAATATTTTCCAAAACATACGTCCTAAAAGGTGGGGTCCCTGATCTTAATTCTGTTCACAGAACCCAAGCTTCTGATCACtatcctacagaag---------atggcacatcatccatgctaaataaatgcttgtttattgaatgaGCATATAACACAGAGAAATCAAG---TGTTTGTCATTAAGTGCATTTAACAGATCATCATGCATAAATTTTTGCCCCAA--ATCTGTTCTGCAAAAT--ATTGATTATTATGAATGGGATGGCTCTAAAGTATCTTGGGCATCTCTCTGCCACCTTACTAGTGGGTAGAGGACAGTTTATCCTTAATTGATGACTGAGAATCAGGA-GCTAAGCTGCATGTCTTTGAACTCCTTAAT-CTCtgtattagtttgctagtgctgctataa i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20317099 1075 - 85365473 agaaaACTG-TATGACTAGTCTGCAAAAGGTGGAAAGAAAAATTG-CTCCTCATTCT---TTTTTTCTTTCCTGTACTCTGCATAGTTAAGGGTTGATGCTACTTCCTA-AATGTCCTCACCCAGAATATCTATGCAATGCCAATAAAATGAAAGACCCAGGG--GCCTAATGTACTATTCCATCCAGAAGGCAGCAAGTATA--TGTGTACAGCATAACAAATAACAAGATTAGACCCCATATGAGCTCTCTTTTGCATAATGAAATTCCACATGTTAAAATGCAGATTTATTTTAAGCCCTAGAAGTGCTGACCATATGCCTCGGTGGCTGAGGAGATGGCTACTTAATAGATAATCTGCAATGCAAGCCAAAGAACTAATCATGGCCATCTGATCATCATGGCCCATCAAAAGCC-GAAATGAGGAGACAGGGAACAGAGCCAGAAACTGCCAACACATTTTACAAGCAGGGAGAGACCAAGAGTCTAAAGGGAGGGCAGGAGGGATAAAATGAACATCT-CCCTACCCTTAGCAACATAACAAAATAATAACAAT---AAGAACATGGCTGTTTTAGAGTATATTTGTGATAAAAAAAAAACATGCTCCACTAAATGTATTACAACTATACTCTTA-----TTTAATCTCCTTTCATTGGGGAAGTTGATGAGAATATTGACATCCCATAAAGGTAGAATATTTTCCAAAACATATATCCTAAAAGGTGGGGTCCCTGACCTTAATTCTGTTCACAGAACCCAAGCTTCTGATCACtatcctacagaag---------atggcacatcatacatgctaaataaatgcttgtttattgaatgaGCATATAACACAGAGAAATCAAG---TGTTTGTCATTAAGTGCATTTAACAGATCATCATGCATAAATTTTTGCCCCAA--ATGTGTTCTGCAAAAT--ATTGATTATTATGAATGGGATGGCTCTAAAATATCTTGGGCATCTCTCTGCCACCTTACTAGGGGGTAGAGGACAGTTTATCCTTAATTGATGAC-GAGAATCAGGA-GCTAAGCTGCCTGTCTTTGAACTCCTTAAT-CTCtgtattagtttgctagtgctgctatta i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16781395 1086 + 184069350 aaaaaacTG-TATGACTGGTCTGAAAAAGGTGGAAAGAAAAATTG-CTCCTCATTCT---TCTTTTCTTTCCTGTACTCTGCATAGTCAAGAGTTGATGCTACTTCCTA-AATGTCCTCACCCGGAATATCTATGCAGTGCCAATAAAACGAAAGTCCCAGGG--GCCTAATGTACTATTCCATCCAGAAGGCAGCAAGTATATGTGTGTACAGCATAACAAATAACAAGATTAGACCCCATACGAGCTCTCTTTTGCATAATGAAATTCCACATGTTAAAATGCAGATTTATTTTAAGCCCTAGAAGTGCTGACCATATGCCTCGGTGGCTGAGGAGATGGCTACTTAATAGATAATCTGCAATGCAAGCCAAAGAACTAATCATGGCCATCTGATCATCATGCCCCATCAAAAGCC-GAAATGAGGAGACAGGGAACAGAGCCAGAAACTGCCAACACAGTTTACAAGCAGGAAGAGACCAAGAGTCTAAAGGGAGGGCAGGAGGGATAAAATGAACATCT-CCCTACCCTAAGCAACATAATAAAGTAATAACAATAAGAAGAATACGGCTGTTTTAGAGTATATTTGTGAT----AAAACACATGCTCCACTAAATGCATTATAACTATACTCTTA-----TTTAATCTCCTTTCATTGGCGAAGTTGATGAGGATATTGATATCCCATAAAGGTGGAATATTTTCCAAAACATATATCCTCAAAGGTGGGGTCCCTGATCTTAATTCTGTTCACAGAACCCAAGCTTCTGACCACTCTCCTACATCATGCATGTTacatggtacatcatgcatgctaaataaatgcttgtttattgaatgaGCATATAACACAGAGAAGTCAAG---TGTTTGTTATTACGTGCATTTAACAGGTCACCATGCATAAATTTTTGCCCCCA--ATGTGTTCTTTAAAAT--ATTGATTATTATGAATGGGATGGCTCTAAAATATCTTGGGCATCTCTCTGCCACTTTACTGGTGGGCAGAGGACAATTTATCCTTAATTGATGACTGAGAGTCAGGA-GTTAAGCTGCATGTCTTTGAACTCCTTAAT-CTCtgtattagtttgctagtgctgctataa i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20831378 1086 + 189454096 aaaaaacTG-TATGACTGGTCTGAAAAAGGTGGAAAGAAAAATTG-CTCCTCATTCT---TCTTTTCTTTCCTGTACTCTGCATAGTCAAGAGTTGATGCTACTTCCTA-AATGTCCTCACCCGGAATATCTATGCAGTGCCAATAAAACGAAAGTCCCAGGG--GCCTAATGTACTATTCCATCCAGAAGGCAGCAAGTATATGTGTGTACAGCATAACAAATAACAAGATTAGACCCCATACGAGCTCTCTTTTGCATAATGAAATTCCACATGTTAAAATGCAGATTTATTTTAAGCCCTAGAAGTGCTGACCATATGCCTCGGTGGCTGAGGAGATGGCTACTTAATAGATAATCTGCAATGCAAGCCAAAGAACTAATCATGGCCATCTGATCATCATACCCCATCAAAAGCC-GAAATGAGGAGACAGGGAACAGAGCCAGAAACTGCCAACACAGTTTACAAGCAGGAAGAGACCAAGAGTCTAAAGGGAGGGCAGGAGGGATAAAATGAACATCT-CCCTACCCTAAGCAACataataaagtaataacaataagaagaataCGGCTGTTTTAGAGTATATTTGTGAT----AAAACACATGCTCCACTAAATGCATTATAACTATACTCTTA-----TTTAATCTCCTTTCATTGGCGAAGTTGATGAGGATATTGATATCCCATAAAGGTGGAATATTTTCCAAAACATATATCCTCAAAGGTGGGGTCCCTGATCTTAATTCTGTTCACAGAACCCAAGCTTCTGACCACTCTCCTACATCATGCATGTTacatggtacatcatgcatgctaaataaatgcttgtttattgaatgaGCATATAACACAGAGAAGTCAAG---TGTTTGTTATTACGTGCATTTAACAGGTCACCATGCATAAATTTTTGCCCCCA--ATGTGTTCTTTAAAAT--ATTGATTATTATGAATGGGATGGCTCTAAAATATCTTGGGCATCTCTCTGCCACTTTACTGGTGGGCAGAGGACAATTTATCCTTAATTGATGACTGAGAGTCAGGA-GTTAAGCTGCATGTCTTTGAACTCCTTAAT-CTCtgtattagtttgctagtgctgctataa i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16421329 1086 + 178775436 aaaaaactg-tatgaCTGGTCTGCAAAAGGTGGAAAGAAAAATTG-ctcctcattct---tcttttctttcctgtactCTGCATAGTCAAGAGTTGATGCTACTTCCTA-AATGTCCCCACCCGGAATATCTATGCAGTGCCAATAAAATGAAAGTCCCAGGG--GCCTAATGTACTATTCCACCCAGAAGGCAGCAAGTATATGTGTGTACAGCATAACAAATAACAAGATTAGACCCCATACGAGCTCTCTTTTGCATAATGAAATTCCacatgttaaaatgcagatttattTTAAGCCCTAGAAGTGCTGACCATATGCCTCGGTGGCTGAGGAGATGGCTACTTAATAGATAATCTGCAATGCAAGCCAAAGAACTAATCATGGCCATCTGATCATCATGCCCCATCAAAAGCC-GAAATGAGGAGACAGGGAACAGAGCCAGAAACTGCCAACACAGTTTACAAGCAGGAAGAGACCAAGAGTCTaaagggagggcaggagggataAAATGAACATCT-CTCTACCCTAAGCAACATAATAAAGTAATAACAATAAGAAGAATATGGCTGTTTTAGAGTATATTTGTGAT----AAAACACATGCTCCACTAAATGCATTATAACTATACTCTTA-----TTTAATCTCCTTTCATTGGCGAAGTTGATGAGGATATTGATATCCCATAAAGGtggaatattttccaaaacatatATCCTCAAAGGTGGGGTCCCTGATCTTAATTCTGTTCACAGAACCCAACCTTCTGACCACTCTCCTACATCATGCATGCTACATGGTACATCATGCATGCTAAATAAATGCTTGTTTATTGAATGAGCATATAACACAGAGAAGTCAAG---TGTTTGTTATTACGTACATTTAACAGGTCACCATGCATAAATTTTTGCCCCCA--Atgtgttctttaaaat--attgattattatGAATGGGATGGCTCTAAAATATCTTGGGCATCTCTCTGCCACTTTACTGGTGGGCAGAGGACAATTTATCCTTAATTGATGACTGAGAGTCAGGA-GTTAAGCTGCATGTCTTTGAACTCCTTAat-ctctgtattagtttgctagtgctgctataa i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19905343 1085 - 48547382 aaaaaACTG-TATGACTGGTCTGCAAAAGGTGGAAAGAAAAATTG-CTCCTCATTCT---TCTTTTCTTTCCTGTACTCTGCATAGTC-AGAGTTGATGCTACTTCCTA-AATGTCTTCACCCGGAATATCTATGCAGTGCCAATAAAACGAAAGTCCCAGGG--GCCTAATGTACTATTCCATCCAGAAGGCAGCAAGTATATGTGTGTACAGCATAACAAATAACAAGATTAGACCCCATACGAGCTCTCTTTTGCATAATGAAATTCCACATGTTAAAATGCAGATTTATTTTAAGCCCTAGAAGTGCTGACCATATGCCTCAGTGGCTGAGGAGATGGCTACTTAATAGATAATCTGCAATGCAAGCCAAAGAACTAATCATGGCCATCTGATCATCATGCCCCATCAAAAGCC-GAAATGAGGAGACAGGGAACAGAGCCAGAAACTGCCAACACAGTTTACAAGCAGGAAGAGACCAAGAGTCTAAAGGGAGGGCAGGAGGGATAAAATGAACATCT-CCCTACCCTAAGCAACataataaaataataacaataagaagaataTGGCTGTTTTAGAGTATATTTGTGAT----AAAACACATGCTCCACTAAATGCATTATAACTATACTCTTA-----TTTAATCTCCTTTCATTGGCGAAGTTGATGAGGATATTGATATCCCATAAAGGTGGAATATTTTCCAAAACATATATCCTCAAAGGTGGGGTCCCTGATCTTAATTCTGTTCACAGAACCCAAGCATCTGACCACTattctacatcatgcatgctacatggtacatcatgcatgctaaatAGATGCTTGTTTATTGAATCAGCATATAACACAGAGAAATCAAG---TGTTTGTTATTATGTGCATTTAACAGGTCACCATGCATAAATTTTTGCCCGCA--ATGTGTTATTTAAAAT--ATTGATTATTATGAATGGGATGGCTCTAAAATATATTGGGCATCTCTCTGCCACTTTACTGGTGGGCAGAGGACAATTTAGCCTTAATTGATGACTGAGAGTCAAGA-GCTAAGCTGCATATCTTTGAACTCCTTAAT-CTCtgtattagtttgctagtgctgctataa i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21263543 1062 - 190850796 aaaAAACTG-TATGATTGGTCTGCAAAATGTGGAACGAAAAATTG-CTCCTCATTCT---TCTTTTCTTTC----------CATAGTTAAGGGTTGATACTACTTCCTA-AATGTCCTCACCCAGAATATCTTCG-AATACCAATAAAATGAAAGGCCCAGAGGTGCCTAATGTACTATTCCATCCAGAAGGCAGCAAGTGTA--TGTGTACGGCATAACAAATAACAAGATTAGACCCCATATGAGCTCTCTTTTTCATAATAAAATTCCACATGTTAAAATGCAGATTTATTTTAAGCCCTAGAAGTGCTGACCATATGCCTCAGTGGCTGAGGGGATGGCTACTTAATAGATAATCTGCAATGCAAGCCAAATAACTAATCACAGCCATCTGATCATCATGCCCCATCAAAAGCC-AAAATGAGGAGACAGGGAACAGAGCCAGAGACTGCCAACACATTTTACAAGCAGGGAGAGACCAAGAGTCTAAAGGGA-GGCAGGAAGGATGAAATGAATATCT-TCCTACCCTAAGCAACATAACAAAATAGTAACAGTAATAAGAACATGGCTGTTTTAGACTATATTTGTGAT----AAAACACGTGCTCCACTAAATATATTATAACTATACTCTTA-----TTTAATCCCCTTTCACTGGGAAAGTTGATGAAGATGTCGATATCCCATGAAGGTAGAATATTTTCCAAAACATATATCCTAAAATGTGGGGTTCCTGTTCTTAACACTTTTCACAGAACCCAAGCTTCTGATCACTATCCTACAGAAG---------ATGTCACATCATGCATGCTAAATAAATGCTTATTTATTGACTGAGCATATAACATAGAGAAATCAAG---TGTTTGTTATTAAGTGCATGTAACAAATCATAATGCATAAA-TTTTGTCCCAA--ATATGTTCTTCAAAAT--ATTGATTATTATGAATGGGATGGTTCTAAAATATCTTGGGCATCTCTCTGCCACCTTACTAGTTGGTAGAGG--AGTTTACCCTTAATTGATGACTGAGAACCAGGA-GCTAAGCTACATGTCTTTGAACGCCTTAAT-CTCtgcattcatttgctagtagtgctataa i calJac3.chr3 I 4 C 0 s mm10.chr5 49246974 1033 + 151834684 AACAAGCTGAAATGATGGATCTGCAGAAGACGCAAGGGCAAGTTG-ATTCTATTTTTTTCTCTCTCCTTTCCTTTCCTTTTTAAAATTTAGCGTGGATGCCACATCCTAGAATGGCCTCTCCAAGGACATCTATGCTGTGTCAATTAAAAGGAAGACCCAGGA--GCCTAATGCACTCTCCTAGCCAGAAGGCCTCAAATAGG--CATATGCTACATAATAAATAACAAGATTAAACTCCACGTGAGCTCTCTTTTACATAATAAAATTCCAAGT-TAAAAATGCAAATGTATTTGAAGGCCTGGAAGTGCTGACCATATGCCTCACTAACTGAAGAGATGGCTACTTAATAGGTAATCTACAGTGCAAGCCAAAGAACTAATCACGGCCATCTGATCATCAGGGCCCATCAAA-----------AGGAGCAAGGAAATGGAGCCAGCAAATGCCAATGCATTGCATCACCAAGT-GGGACCAACA------------GACATTGGTGATAGAA----------CTCTCCTCTAA-CAGTAAAGTAAACTAACA----TAAGAGCAACAAGG------TCAATAACGTTCGT-AC----AGACCTTGTTCTTTACTAAACACATTTCTACTGTGATCTCAGTACGTGTATACTGCATATTCGGTATATGCTGATGAGAGTAATAATATCCCATGAA---AGGACATTTGCCAAGGCCTTTATCTTATCATATGGAGTTCCTG--CTTAGTTCTGTTCTCAGAGTCC-AGCTTTTCATTGCTGTCCTAGAAAAC---------ATAGTATATCATATATGTTAAAGAAATGCTTGCTTTTTCAATATCCTGAAAACCAAGAAAAGTCAAG----AATCGTTGATTTGTAATTTAAATAGATCGTGACTCATAAATGTTAATTGAAG--AGGTGTTTTATTCTAT--ATTGATTATTATGAATTTG-TAGCTCTAAAATATCTAAAATATTTTTCTTCCCTCTTACTAGTTGGTAGGAGACAATATTTCCTTAACTAAT-ATTAAGACTCAATATACAAAACTCCATGCTTTTAAACATCTTAATGTTCTTtattaacttcctagagttgctataa i mm10.chr5 I 4 C 0 s canFam3.chr3 3838549 1046 - 91889043 --------------ACTGGACTACAAAAGGAGTAAAGGGAAAATGACTCTTCTCCCG---TCTTTTCCTTCCCGCACGTTGCACGGTTCTGGGTTGATGCTACATCCCAGGATGCCCTCACCCATAATATCTCTGCAATGTC-ATAAAATGAAAGGCCC-GGG--GCCTAATGTACTATTCCATTCAGAATGCA-CAAGTAGA--CGTGTGCCGCAT----AAGAACAAGATTAGACCCCATGTGGGCTCTCTTTTGCATAATAAAATCCCACATGTTAAAATGCAGATTTATTTTAAGCCCTGGAAGTGCTGACCATATGCCTCAGTGGCTGAGGAGATGGCTACTTAATAGATAATCTGCAATGCAAGCCAAAGAACTAATCATGGCCATCTGATCATTGTGCCCCATCAAAAGCCAGCAATGAGGAGCTAGGGAACAGAGCCAGAGACTGCCGAGGCATCTCATGGGCACGGAGAAAGTCGGAGCTGAAAGGAA---CAGGAAGA--TAAGTGAACATCTCCCCCACCCTAACAAAAATAACAACATAACAATGAT---AATAGTACAGCTTCATTACTGTGGGCTTGCTTC----GAAATATCCAATTCGCTA----TGCTACCCCTGCAATTTTG-----TGTG-TCCCTTCTCACTGGGGAAGTGGATGAGGACACTGATACCTCCGAAGGGCAGGATGTTTTCCAAAATCTGCACCCTAAACTGCCAGGTCTCT-ACTTTAGGTCTGTTGTCAG--TCCAAATTTGTGACCACtatcctgcagaac---------atggcacatcacagatgctctaca----cctatttgttgaataaGCGTAAAGCACATTGAAATCATTTTTTTTTTGTCATTACATGAATTTAACAGATCACAGTGCATAACTTTTAGTCCCAGGCAAGTTTTCTTTAAAATGCATTTATTATTGTCAATAGAACAGTTTTAAAATGTTCTGGGGATTTCTCTGCCATTTCATTAGCTTGGAGGGGTTGCTTCGCCCTTTATTAATGACCTTGAGTTATGA-GCCAGCCTATGTGTCATGGAACTCCTTAGT-CTCTGTGTTCATTTGATGGGGAGACTGTAG i canFam3.chr3 C 0 I 31 a score=94885.000000 s hg38.chr4_KI270790v1_alt 141851 30 + 220246 caaagtaaaacaaactgagaagcataaaca s panTro4.chr4 21528204 30 + 193495092 caaagtaaaacaaactgagaagcataaaca i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21705673 30 + 198332218 caaagtaaaacaaactgagaagcataaaca i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20318174 30 - 85365473 caaagtaaaacaaactgagaagcataaaca i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16782481 30 + 184069350 taaagtaaaataaactgagaagcataaaca i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20832464 30 + 189454096 taaagtaaaataaactgagaagcataaaca i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16422415 30 + 178775436 taaagtaaaataaactgagaagcataaaca i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19906428 30 - 48547382 tcaagtaaaataaactgagaagcataaaca i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21264605 26 - 190850796 caaagtaaaaca----gagaagcataaaca i calJac3.chr3 C 0 C 0 s mm10.chr5 49248007 30 + 151834684 taaagtatcccaaactgtgtagcttaacaa i mm10.chr5 C 0 C 0 e canFam3.chr3 3839595 31 - 91889043 I a score=1357622.000000 s hg38.chr4_KI270790v1_alt 141881 413 + 220246 acagaaatatattgtctcacagttctagatgcaggaagtccaagatcaaagcatcagcagggttaatttcttctgagagtagtaaggaagaatctactccatgtccctcctccctagcttctggtggtttgctggcaatctt-ggttttctttagcttgccaaagcaacaccccatatctctaccttcaggtccacatggcatccctcctgtgtgagcctgtgttcaaaactctcctttttatcaggacaacagtcacattggattaagggcccatatttctgcagtatgacctcatcttaactaattatatcttcaatgatcctatattcaaataaagttgcattctgaaatattgggggttagaacttcaacatgtgaatttaggagtgcataattcaactgctaacaGTCT s panTro4.chr4 21528234 413 + 193495092 acagaaatatattgtctcacagttctagatgcaggaagtccaagatcaaagcatcagcagggttaatttcttctgagagtagtaaggaagaatctactccatgtccctcctccctagcttctggtggtttgctggcaatctt-ggttttctttagcttgccaaagcaacaccccatatctctaccttcaggtccacatggcatccctcgtgtgtgagcctgtgttcaaaactctcctttttatcaggacaacagtcacattggattaagggcccatatttctgcagtatgacctcatcttaactaattatatcttcaatgatcctatattcaaataaagttgcattctgaaatattgggggttagaacttcaagatgtgaatttaggagtgcataattcaactgctaacaGTCT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21705703 413 + 198332218 acagaaatatattgtctcacagttctagatgcaggaagtccaagatcaaagcatcagcagggttaatttcttctgagggtagtaaggaagaatctactccatgtctctcctccctagcttctggtggttttctggcaatctt-ggttttctttagcttgccaaagtaacactctccatctctatcttcaggtccacatggcatccctcctgtgtgagcctgtgttcaaaactctcctttttatcaggacaacagtcacattggattaagggcccatatttctgcagtatgacctcatcttaactaattatatcttcaatgatcctatattcaaataaagttgcattctgaaacattgggggttagaacttcaacatgtgaatttaggagtgcacaattcaactactaacaGTCT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20318204 413 - 85365473 acagaaatatattgtctcacagttctagatgcaggaagtccaagatcaaagcatcagcagggttaatttcttctgagagtagtaaggaagaatctactccatgtctctcctccctagcttctgatggtttgctggcaatctt-ggttttctttagcttgccaaagcaacaccccccatctctaccttcaggttcacatggcatccctcctgtgtgagcctgtgttcaaaactctcctttttatcaggacaacagtcacattggattaagggcccgtatttctgcagtatgacctcatcttaactaattatatcttcaatgatcctatattcaaataaagttgcattctgaaatattgggggttagaacttcaacacgtgaatttaggagtgcacaattcaactactaacaGTCT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16782511 412 + 184069350 acagaaatatattgtctcacagttctagatgcaggaagtccaagatcaaggcgtcagcagggttaatttcttctgagggctgtaaggaagaatgtactccatgtctctcctccctggcttctagtggtttgctggcaatctt-ggttttctttagcttgccaaagccatgctcc-catctctaccttcaggtccatatggcatctctcctgtgtaagcctgtgttcaaaactcccctttttatcaggacaacagtcacattggattaagggcccatatttctgcagtatgaactcatcttaagtaattatatcttcaatgaccctatattcaaataaagttgcattctgaaatattgggggttagaacttcaacatgtgaatttaggagtgcacaattcaactactaacaGTCT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20832494 412 + 189454096 acagaaatatattgtctcacagttctagatgcaggaagtccaagatcaaggcgtcagcagggttaatttcttctgagggctgtaaggaagaatgtactccatgtctctcctccctggcttctagtggtttgctggcaatctt-ggttttctttagcttgccaaagccatgcccc-catctctaccttcaggtccatatggcatctctcctgtgtaagcctgtgttcaaaactcccctttttatcaggacaacagtcacattggattaagggcccatatttctgcagtatgacctcatcttaactaattatatcttcaatgaccctatattcaaataaagttgcattctgaaatattgggggttagaacttcaacatgtgaatttaggagtgcacaattcaactactaacaGTCT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16422445 412 + 178775436 acagaaatatattgtctcacagttctagatgcaggaagtccaagatcaaggcgtcAGCAGGGTTAATTTCTTCTGAGGGCTGTAAGGAAGAATCTACTCCATGTCGCTCCTCCCTGGCTTCTAgcggtttgctggcaatctt-ggTTTTCTTTAGCTTGCCAAAGCCATGCCCC-CATCTCTACCTTCAGGTCCATATGGCATCTCTCCTGTGTAAGCCTGTGTTCAAAACTCCCCTTTTTATCAGGACAACAGTCACATTGGATTAAGGGCCCATATTTCtgcagtatgacctcatcttaactaattatatcttcAATGACCCTATATTCAAATAAAGTTGCATTCTGAAATAttgggggttagaacttcaacatgtgaatttagGAGTGCACAATTCAACTACTAAcagtct i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19906458 412 - 48547382 acagaaatatattgtcttacagttctagatgcaggaagtccaagatcaaggcgtcagcagggttaatttctcctgagggctataaggaagaatctactccatgtctctcctccctggcttctagtggtttgctggcaatctt-ggttttctttagcttgccaaagccatgcccc-catctctaccttcaggtccatatggcatctctcctgtgtgagcctgtgttcaaaactcccctttttatcaggacaacagtcacattggattaagggcccatatttctgcagtatgacctcatcttaactaattatatcttcaatgaccctatattcaaataaagttgcattctgaaatattgggggttagaacttcaacatgtgaatttaggagcgcataattcaactactaacaGTCT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21264631 399 - 190850796 acagaaatatactgcctcacaa---tagacacaggaagtccgagatcaaggcatcagcagggttaatttcttctgagggctgtaatgaagaatatgttccatgtctctcctccctagcttctggtggtttgctggcaatttt-gcttttacttagcttgcagaagcagcac---------ctgccttcaggtccacat-gcattgctcctgtgtgagccagtgttcaaacctcccctctttatcaggacaaaagtcatcttggattaggagcccatatttctgtagtatgacctcatcttaactaattatatcttcaatgatcctatattgaaataaggttgca-tctgaaatactgggggttagaacttcaacatatgaatttaggagtacacagtttaactcataacaGTCT i calJac3.chr3 C 0 C 0 s mm10.chr5 49248037 227 + 151834684 acagaaa-------------atttttggaggtaagaagttgaaaatcaaggcaccaccagggcggtttccttttattgattagaaggaagaatatcttccctg---cttctcaatagcttctgat---------------------------------------------------------------------------------tcctgtg---ggcaatgtttagtactcc--------------------------ttgattatagatgcactttccta-agcattgccccatcctcac--------------atggtc----------------ttgccatttgagaacttgtgcctaaG-----------------------GTGGATGTTT-------TCATAGCCA i mm10.chr5 C 0 C 0 s canFam3.chr3 3839626 386 - 91889043 atggaaatgtgtagcctcacagtaatggaggctggaagtctaagatcaaggcatcagcagggttggatccttctgagggctgtgaaggagaatctgtcccaagcttctcctc--tacctgatggtggtttgctggagatcttcagcgttccttgacttacagatgcatgacccc-tctctctatgctcatttccacatggtgtacc---------------tgtccagaggtcccctttcaatcaggacaccagtcacattagacaagggacccagcctacactagtaggacctcatctaagctaattacacctgcaa-aaccctatttccaaataagggcacattgtga---------tcttaggacttcaacataagatgtgagggagacccaattcaatccacaacaGTTT i canFam3.chr3 I 31 I 8 a score=1296009.000000 s hg38.chr4_KI270790v1_alt 142294 460 + 220246 CTtttatttatttatttatttgcagtttaataactttatttGACACCGAGCAGTTAGTTCTCATTGAAATGAACTGTAGATTTTTGAAAGTGGTGAC------AGGCAAAATAGGTATACAGCCTGTTTGGTGAATCTTCATCTC--ATTGCT-TTTCAGGACAGCCACCCAAGAGTACAAGATAGAACATTTCTTATTCCTTTATGCCA-CATAGCTTTGTTGAGCCTGGTATCAATG--CACACATCTGGAGCTCTCATCTCTTTCATGGAAAATTTCCAGATCTCTTTCAGTGCCCATAAGACCTACTACTTGAATCCCACTCCATGGATGCACCTCTAAATATTGATGGTGTATCCTCTGGCCACCTTCTTGTCGATGGCAAAATGGCCCTTCTTCTTGACTTTCTTTATGTGAGCTATTCTGCCAGGCTCAGGTTGGAAAGGAACCATAACAGtctcttacatc----tga s panTro4.chr4 21528647 460 + 193495092 CTTTTATTTATTTATTTATTTGCAGTTTAATAACTTTATTTGACACCGAGCAGTTAGTTCTCATTGAAATGAACTGTAGATTTTTGAAAGTGGTGAC------AGGCAAAATAGGTATACAGCCTGTTTGGTGAATCTTCATCTC--ATTGCT-TTTCAGGACAGCCACCCAAGAGTACAAGATAGAACATTTCTTATTCCTTTATGCCA-CATAGCTTTGTTGAGCCTGGTATCAATG--CACACATCTGGAGCTCTCATCTCTTTCATGGAAAATTTCCAGACCTCTTTCAGTGCCCATAAGACCTACTACTTGAATCCCACTCCATGGATGCACCTCTAAATATTGATGGTGTATTCTCTGGTGACCTTCTTGTTGATGGCAAAAGGGCCCTTCTTCTTGACTTTCTTTATGTGAGCTATTCTGCCAGGCTCAGGTTGGAAAGGAACCATAACAGtctcttacatc----tga i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21706116 459 + 198332218 CTTTTATTTATTTATTTATTTGC-GTTTAATAACTTTATTTGACACCGAGCAGTTAGTTCTCATTGAAATCAACCGTAGATTTTTGAAAGTGGTGAC------AGGTAGAATAGGTATAGAGCCTGTTTGGTGAATCTTCATCTC--ATTGCT-TTTCAGGACAGCCACCCAAGAGTACAAGATAGAACATTTGTTATTCCTTTATGCCA-CATAGCTTTGTTGAGTCTGGTATCAATG--CACACATCTGGAGCTCTCATCTCTTTCATGGAAAATTTCCAGATCTCTTTCAGTGCCCATAAGACCTACTTCTTGAATCCCACTCCATGGATGCACCTCTGAATATTGATGGTGTATTCTCTGGTGACCTTCTTGTTGATGGCAAAATGGCCCTTCTTCTTGACTTTCTTTATGTGAGCTACTCTGCCAGGCTCAGGTTGGAAAGGAACCATAACAGtctcttacatc----tga i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20318617 456 - 85365473 CT----TTTACTTATTTATTTGCAGTTTAATAACTTTATTTGACACTGAGCAGTTAGTTCTCACCGAAATCAACTGTAGATTTTTGAAAGTGGTGAC------AGGTAAAATAGGTATAGAGCCTGTTTGGTGAATCTTCATCTC--ATTGCT-TTTCAGGACAGCCACCCAAGAGTACAAGATAGAACATTTCTTATTCCTTTATGCCA-CATAGCTTTGTTGAGCCTGGTATCAATG--CACACATCTGGAGCTCTCATCTCTTTCATGGCAAATTTCCAGATCTCTTTCAGTGCCCATAAGACCTACTTCTTGAATCCCACTCCATGGATGCACCTCTAAATATTGATGGTGTATTCTCTGGTGACCTTCTTGTTGATGGCAAAATGGCCCTTCTTCTTGACTTTCTTTATGGGAGCCATTCTGCCAGGCTCAGGTTGGAAAGGAAccgtaacagtctcttacatc----tga i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16782923 453 + 184069350 CT----TTTATTTATTTATTTGCAGTTTAATAAC----TTTGACACCGAGCAGTTAGTCCTCATTGAAATCGACTATAGATTTTTGAAAGTGGTGAC------AGGTAAAATAGGTATAGAGTCTGTTTGGTGAATCTTCATCTC--ATTGCCGTTTCAGGACAGTCACCCAAGAGTACAAGATAGAACATTTCTTATTCCTTTACGCCA-CATAGCTTTGTTGAGCCTAGTATCAATG--CACACATCTGGAGCTCTCATCTCTTTCATGGCAAATTTCCAGATCTGTTTGAGTGCCCATAAGACTTACTTCTTGTATCCCACTCCATGGATGCACCTCTAAATATTGATGGTGTATTCTCTGTTCACCTTCTTGTTGATGGTAAAATGGTCCTTCTTCTTGACTTTCTTTATGGGAGCCATTCCACCAGGTTTAGGTTGGAAAGGAACCATAACAGtctcttacatc----tga i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20832906 453 + 189454096 CT----TTTATTTATTTATTTGCAGTTTAATAAC----TTTGACACCGAGCAGTTAGTCCTCATTGAAATCGACTATAGATTTTTGAAAGTGGTGAC------AGGTAAAATAGGTATAGAGTCTGTTTGGTGAATCTTCATCTC--ATTGCCGTTTCAGGACAGTCACCCAAGAGTACAAGATAGAACATTTCTTATTCCTTTACGCCA-CATAGCTTTGTTGAGCCTAGTATCAATG--CACACATCTGGAGCTCTCATCTCTTTCATGGCAAATTTCCAGATCTGTTTGAGTGCCCATAAGACCTACTTCTTGTATCCCACTCCATGGATGCACCTCTAAATATTGATGGTGTATTCTCTGTTCACCTTCTTGTTGATGGTAAAATGGTCCTTCTTCTTGACTTTCTTTATGGGAGCCATTCCACCAGGTTTAGGTTGGAAAGGAACCATAACAGtctcttacatc----tga i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16422857 453 + 178775436 ct----tttatttatttatttgcagtttAATAAC----TTTGACACCGAGCAGTTAGTCCTCATTGAAATCGACTATAGATTTTTGAAAGTGGTGAC------AGGTAAAATAGGTATAGAGCCTGTTTGGTGAATCTTCATCTC--ATTGCCGTTTCAGGACAGTCACCCAAGAGTACAAGATAGAACATTTCTTATTCCTTTACGCCA-CATAGCTTTGTTGAGCCTAGTATCAATG--CACACATCTGGAGCTCTCATCTCTTTCATGGCAAATTTCCAGATCTGTTTGAGTGCCCATAAGACCTACTTCTTGTATCCCACTCCATGGATGCACCTCTAAATATTGATGGTGTATTCTCTGTTCACCTTCTTGTTGATGGTAAAATGGTCCTTCTTCTTGACTTTCTTTATGGGAGCCATTCCACCAGGTTTAGGTTGGAAAGGAACCATAACAGTCTCTTACATC----TGA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19906870 457 - 48547382 CT----TTTATGTATTTATTTGCAGTTTAATAACTTGATTTGACACCGAGCAGTTAGTCCTCATTGAAATCAACTATAAATTTTTGATAGTGGTGAC------AGGTAAAATAGGTATAGAGCCTGTTTGGTGAATCTTCATCTC--ATTGCCGTTTCAGGACAGTCACCCAAGAGTACAAGATAGAACATTTCTTATTCCTTTACGCCA-CATAGCTTTGTTGAGCCTGGTGTCAATG--CACACATCTGGGGCTCTCATCTCTTTCATGGCAAATTTCCAGATCTGTTTGAGTGCCCATAAGACCTACTTCTTGTATCCCACTCCATGGATGCACCTCTAAATATTGATGGCATATTCTCTGTTCACCTTCTTGGTGATGGTAAAATGGTCCTTCTTCTTGACTGTCTTTGTGGGAGCCATTCCACCAGGTTCAGGTTGGAAAGGAAccacaacagtctcttacatc----tga i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21265030 456 - 190850796 CT----CGTATTTCTTTATTGACAGTTTAATAACTTTATTTGACACTGAGCAGTTAGTTCTTATTGAAATCGACTATAGATTTTTGAAAGTGGTGAC------AGGTAAAATAGATAGAGAGCC-GTTTGGTGACTCTTCATCTC--ATTACCTTTTCAGGACAGCCACACAGGAGTACAAGATAGAAGACTTCTTATCCCTTTACACCA-CGTAGCTTTGTTCAGCCTGGTATCAATGTACACATATCTGGAGCTCTCATCTCCATCATGGCAAATTTCTACATCTCTTTGAGTGCCCATAAGACCCACGTCTTGAATCCCACTCCAAGGATGCAGCTTTAAGTATTGATGGTGTATTATCTGGTCACCTTCTTGTTGATGGCAAAATGGTCCTTCTTCTTGACCTTCTT--TGACCATCTTTCTGCCAGGCTCAGGTTGGAAAGTAACCATAACAGtctcttacatc----tga i calJac3.chr3 C 0 C 0 s mm10.chr5 49248264 282 + 151834684 TC----TTTAGGTCTCTGGTAGTG--------------TTTGATAC------ATTTATTCTTGCTGGAAATGGTGATAa----ttgaaactaggaacttgtgtaggctaagcatacactgaatatctgagctacatccttagctccAGATGCC-TTTTAAAA-AGCCCCCT--------------------------CCCCTGCATGTTAGCATTGCTGTTTTGTTTTCTGCATTAATG--TACCAATGATAGAGTCTTCTTTCTT---------------------------------------CTTGCTACTT----------------------------------------TTCTCTGTGGCCACTTTTTAAATGACAGTA----------------TGGCTTCTTT--------------------------------------CCGTATCA---TCTTATATCAGCTTGC i mm10.chr5 C 0 C 0 e canFam3.chr3 3840012 8 - 91889043 I a score=2301975.000000 s hg38.chr4_KI270790v1_alt 142754 687 + 220246 gcctttgcacacgatgttccccacacttaggatactccatc---caccactgtccccatcctgacctccacattcctttcaactgact-aattaac--tgctcacatcactgctaccatttcccttcattcaggaagccttccctgacccAGGTCAATAAATGTCA-GCTAGTGTGATGaataataataacagtaataataGCTGAGAAATATTAACCACCCTGAGTAGTC---ATGTGGCAATAAGAGAAAGCACTATTGAGACTTTTCAACGCTGCTCTGTGATCACTTGCTTTTTAATTCTTTTATCAGTCTTTTTTTACTTGCTTTTTCGTTATTTTATTT-----ATTAAAGAA-A-TTAAGACTGTCAGTGAGCATTAGTGTGTTGCGTCTGTTGGCTTATTATT---TTCC-GGTCCATGTCTTTTTGTGATTACAGATCTATAGATCATGTGTC-TGATA---GACTCCCTTTCTTCATTCCATACTTTGTGACTGAATCCAGGCAAggc-aaatcacttttaattctcatttcctc--atctc--caatcaggataaaattcttaggctgtagagttgatgtgagaattagagatacagctaagatagtgctgaagtcataataggcactGAGGTAC----------TCattatttgatatattatagt----------a-gttaggattattatttat--gaaattagaattattaATGTTTCTTCTACT s panTro4.chr4 21529107 690 + 193495092 gcctttgcacacgatgttccccacacttaggatattccacc---caccactgtccccatcctgacctccacattcctttcaactgact-aattaac--tgctcacatcactgctaccatttcccttcattcaggaagccttccctgacccAGGTCAATAAACGTCA-GCTAGTGTGATGAATAATAATAACAGTAATAATAGCCGAGAAATATTAACCACCCTGAGTAGTC---ATGTGGCAATAAGAGAAAGCACTATTGAGACTTTTCAACGCTGCTCTGTGATCACTTGCTTTTTAATTCTTTTATCAGTCTTTTTTTACTTGCTTTTTCGTTATTTTATTT-----ATTAAAGAA-A-TTAAGACTGTCAGTGAGCATTAGTGTGTTGCGTCTGTTGGCTTATTATTATTTTCC-GGTCCATGTCTTTTTGTGATTACAGATCTATAGATCATGGGTC-TGATA---GACTCCCTTTCTTCATTCCATACTTTGTGACTGAATCCAGGCAAggc-aaatcacttttaattgtcatttcctc--atctc--caatcaggataaaattcttaggctgtagagttgatgtgagaattagagatacagctaagatagtgctgaagtcataataggcactGAGGTAC----------TCATTATTTGATATATTATAGT----------A-GTTAGGATTATTATTTAT--GAAATTAGAATTATTAATGTTTCTTCTACT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21706575 692 + 198332218 gcctttgcacaagatgttccccacacttaggatactccacc---caccactgtccccttcctgacctccacattcctttcaactgact-aattaac--tgctcacatcactgctaccatttcccttcattcaggaagccttccctgacccAGGTCAATAAATGTCA-GCTAGTATGATGAATAATAATAATAGTAATAATAGCCGAGAAATATTAACCACACTGAGTAGTC---ATGTGGCAATAAGAGAAAGCACTATTGAGACTTTTCAACCGTGCTCTGTGATCACTTGCTTTTTAATTCTTTTATCAATCTTTTTTTACTTGCTTTTTCattattttatttatttaattaaagaa-a-ttaaGACTATCAGTGAGCATTAGTGTGTTGCCTCTCTTGGCTTATTATT---TTCT-GGTCCATGTCTTTTTGTGATTACAGATCTATAGATCATGTGTC-TGATA---GACTCTCTTTCTTCATTCTATACTTTGTGACTGAATCCAGGCAAggc-aaatcacttttaattctcatttcctc--atctc--aaatcaggataaaattcttaggctgtagagttgatgtgagaattagagatacagctaagatagtgctgaagtcataataggcactGAGGTAC----------TCATTATTTGATATATTATAGT----------A-GTTAGGATTATTATTTAT--GAAATTAGAATTATTAATGTTTCTTCTACT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20319073 691 - 85365473 gcctttgcacaagatgttccccacacttaggatactccacc---caccactgtccccttcctgacctccacattcctttcaactgact-aattaac--tgctcacatcactgctaccatttcccttcattcaggaagccttccctgacccAGGTCAATAAATGTCA-GCTAGTATGATGACtaataataatagtaataatagctgataaatattaaCCACCCTGAGTAGTC---ATGTGGCAATAAAAGAAAGTACTATTGAGACTTTTCAAC-CTGCTCTGTGATCACTTCCTTTTTAATTCTTTTACCAATCTTTTTTTACTTGCTTTTTCGTTATTTTATTTACTTAATTAAAGAA-A-TTAAGACTATCAGTGAGCATTAGTGTGTTGCCTCTGTTGGCTTATTATT---TTCC-GGTCCATGACTTTTTGTGATTACAGATCTATAGATCATGTGTC-TGATA---GACTCCCTTTCTTCATTCTATACTTTGTGACTGAATCCAGGCAAggc-aaatcacttttaattctcatttcctc--atctc--aaatcaggataaaattcttaggctgtagagttgatgtgagaattagaaatacagctaagatagtgctcaagtcataataggcactgaggtac----------tcattattTGATATATTATAGT----------A-GTTAGGATTATTATTTAG--GAAATGAGAATTATTAAtgtttcttctact i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16783376 682 + 184069350 gcctttgcacgagatgtcccccacacttaggatactccacc---caccactgtccccttcctgacctccacgttcctttcaactgact-aattaac--tgctcacatcactgctatcatttcccttcattcaggaagccttccctgaccTAGGTCAATAAATGTCA-GCTAGTATTATGAATAATGATAATAGAAATAATAGCAGATAAATAGTAACCACTCTGAGTAGTT---ATGTGGCAATAAGAGAAAGCACTATTGAGACCTTTCAACCCTGCTCTGTGATCACTTG-TTTTTAATTATTTTACCAATCTTTTTTTACTTGCTTTTTCATTATTTTATCT----AATTAAAGAA-A-TTAAGACTGCCAGTGAGCATTAGTGTGTTGCCTCTGTTGGCTTAACATT---TTCT-GGTAAATGTCTTGCTGTGATTACAGATCTACAGATCTTGTGTC-TGACA---GACTCCCTTTCTTTATTCTAGACTTTGTGACTGAATCCAGGCAAggc-aaatcacttttaattctcatttcctc--atccc--aaatcaggataaaattcttaggctgtagagttgatgtgagaattagagatacagctaagatagtgctcaagtcataataggcactGAGGTAC----------CCATTATTTGA-----TATAGT----------A-GTTAGGATTATTATTCAT--GAAATTAGAATTATTAATGTTTCTTCCACT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20833359 682 + 189454096 gcctttgcacgagatgtcccccacacttaggatactccacc---caccactgtccccttcctgacctccacgttcctttcaactgact-aattaac--tgctcacatcactgctatcatttcccttcattcaggaagccttccctgaccTAGGTCAATAAATGTCA-GCTAGTATTATGaataatgataatagtaataatagcagataaatagtaaCCACTCTGAGTAGTT---ATGTGGCAATAAGAGAAAGCACTATTGAGACCTTTCAACCCTGCTCTGTGATCACTTG-TTTTTAATTATTTTACCAATCTTTTTTTACTTGCTTTTTCATTATTTTATCT----AATTAAAGAA-A-TTAAGACTGCCAGTGAGCATTAGTGTGTTGCCTCTGTTGGCTTAACATT---TTCT-GGTAAATGTCTTGCTGTGATTACAGATCTACAGATCTTGTGTC-TGACA---GACTCCCTTTCTTTATTCTAGGCTTTGTGACTGAATCCAGGCAAggc-aaatcacttttaattctcatttcctc--atccc--aaatcaggataaaattcttaggctgtagagttgatgtgagaattagagataCAGCTAAGATAGTGCTCAAGTCATAATAGGCACTGAGGTAC----------CCATTATTTGA-----TATAGT----------A-GTTAGGATTATTATTTAT--GAAATTAGAATTATTAATGTTTCTTCCACT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16423310 682 + 178775436 GCCTTTGCACGAGATGTCCCCCACACTTAGGATACTCCACC---CACCACTGTCCCCTTCCTGACCTCCACGTTCCTTTCAACTGACT-AATTAAC--TGCTCACATCACTGCTATCATTTCCCTTCattcaggaagccttccctgacctaggtcaataaatgtca-gctagtattatgaataatgataatagtaataatagcagaTAAATAGTAACCACTCTGAGTAGTC---ATGTGGCAATAAGAGAAAGCACTATTGAGACCTTTCAACCCTGCTCTGTGATcacttg-tttttaattattttaccaatctttttttacttgctttttcattattttatct----aattaaagaa-a-ttaagactGCCAGTGAGCATTAGTGTGTTGCCTCTGTTGGCTTAACATT---TTCT-GGTAAATGTCTTGCTGTGATTACAGATCTACAGATCTTGTGTC-TGACA---GACTCCCTTTCTTTATTCTAGACTTTGTGACTGAATCCAGGCAAGGC-AAATCACTTTTAATTCTCATTTCCTC--ATCCC--AAATCAGGATAAAATTCTTAGGCTGTAGAGTTGATGTGAGAATTAGAGATACAGCTAAGATAGTGCTCAAGTCATAATAGGCACTGAGGTAC----------CCATTATTTGA-----TATAGT----------A-GTTAGgattattatttat--gaaattagAATTATTAATGTTTCTTCTACT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19907327 680 - 48547382 gcctttgcacgagatgtcccccacacttaggatactccacc---caccgctgtccccttcctgacctccacgttcctttcaactgactaaattaac--tgctcacatcactgctatcatttcccttcattcaggaagccttccctgaccTAGGTCAATAAATGTCA-GCTAGTATTATGaataatgataatagtaataataGCAGATAAAGAGTAACCACTCTGAGTAGTC---ATGTGGCAAGAAGAGAAAGCACTATTTAGATCTTTCAACCCTGCTCTGTGATCACTTG-TTTTTAATTATTTTACCAATCTTTTTTTACTTGCTTTTTCATTATTTTATCT----AATTAAAGAA-A-TTAAGACTGCCAGTGAGCATTAGCGTGTTGCCTCTGTTGGCTTAACATT---TTCT-GGTAAATGTCTTGCTGTGATTACAGATCTACAGATCTTGTGTC-TGACA---GACTCCCTTTCTTTATTCTAGACTTTGTGACTGAATCCAGGCAAggc-aaatcacttttaattctcatttcctc--atccc--aaatcaggataaaattcttaggctgtagagttgatgtgagaattagagataCAGCTAAGATAGTGCTCAAGTCATAATAGGCACGGAGGTAC----------CCATTATTTGA-----TATAGT----------A-GTTAGGATTATTATTTAG--GAAATTAGAATTAT---TGTTTCTTCTACT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21265486 654 - 190850796 gcctttgcacaagatgttctccacacttaggatactccacc---caccactgtccccttcctgacctcca-------------tgact-aattaac--tgctcacatcactgctatcatttcccttaattcaggaagctttccctgacccAGGTCAATAAATGCCA-GCTATCATTGTGAATAATAATAA---TAACAATAGCAGATAAATATTAACCACCCTGAGCAGTC---ATGTGGCAATAAGAGAATGCATTATTGAGACTTTTCAACCCTGCTCTGTGATCATTTGCTTATCAATTCTTTAACCATTCTTTTTCTACTTGCTTTTTCattattttatttatttaattaaaGAACA-TTAAGACTGTCAGTGAGCATTAGTGTGTTGCCTCTGTTGGCTTACTATT---TTCC-GGTACATATCTTGTTGTGATTACAGATCTACTGGTCTTGTGTC-TGATA---GACTCGTTTTCTTCATTCTAAACTTTGTGACTGAATCCAGGCAAGGC-AAATCAC-TTTAATTTTCATTTCCTC--ATCTC--AAATCAGGATAAAATC----GGCTGTAAAGTTGATGT--------------CGGATAACATAATAC-----TCATGATATGCACTGAGGTAT----------TCATTATTTGATATATTATAGT----------AGGTTAGGattattatttat--gaaattattattattaatGTTTCTTCTATT i calJac3.chr3 C 0 C 0 s mm10.chr5 49248546 659 + 151834684 ATCTTTGTGTAAACCATTCTGCATAGTTAGACTGCTCTCCCCATCACTACTGTCCCCATCCCTGACCATGCACTTATTTCAATTGAAT-TTTCAA------TCTGGTCGGCGCTGCAATTTCCATTCCTTCAGGAAGCCTCCTTTGGTCCAGATCAATAATTATTATTCTAGTATCACAGGTGATAATTA---TATGAGAAGCAAATGAATGCTAGCCACAGTGAACAATCATAATAAGGTAGTAA-AGGAAGCACAGCTGAAACTTTTCAGCCCTATTCCAGCACCATTTCCTTTTCA-----------AATCTCTCTTAAAAT-CTTATGGAGTATTGTA-------AACTAAATAA-AGTGAAGGCTGCTCTGGAATCTTAATGTCTTGCCTCTGTTGGCTGATTATC---TTCT-GACATACACTTTGTTGTTCTAGCACATCTGCAGATCCGGTGTC-ATGCATTGGACTCCTACCACACATCCTGCATTCAGTGAACAATCTGAAGCTAAGG-TACTCATTTCTAATCCTCATTTTCTCCTATCTC----------ACAAAATTATTGGGCAATAAAGTTTAAATAAGGTTCATAGATACATC------GGTCCTCACATTATCACAGGTATGAAGGTAC----------TCATTTCTTGA-----TACAAT----------A-AGTACTATTGTTACTTAT--AAAATTAATGCAGTGAAGGTTCTATCTAtt i mm10.chr5 C 0 I 542 s canFam3.chr3 3840020 679 - 91889043 GCCTTTGTGTAAGCTCCTCTCCACACTTAGAACACT-TGCC---CACC----------------CTCTCATGTTCTTTTTAATTAGTT-AATTAACCACACTCAGGTCATCCTTACTATTTCTCTTC-TTAAAGAAGCATTTCCTAACCCAGCTCAACAAATGTCA-GCTAGCATTATGAATAATAATAC---GAATAATAGCAGATGAATATGACTCACACGGAACAGTC---AGGCAGCAGTGGTAGAAAGCACTACTGAG-TCTTTCAAGCCTGTTCCGCAATTGTTTGCTTTTTTAGTTCTCTAACAACATTTTTAT-CTTTTTTTGTTGTTGTT----------AATTGAAGAACA-TTTGGGCTGCTCCTGAGTGTGGGATTGTTACCTGTATTGGTTTATTGTT---TTCTGGGTGCATACTCAGTCATGATAACAGATCTACAGGTCTGGTGTCATCACAAT-GACTCCCCTTCTACATTCTACCCCTTGTGACTGATCCAAGGCAAGACAAAAACATATCTAAGCC-AAGTTCTTC--ATCTCTAAAGTCAGAATACAATTCTCAG--------GTTGATGTGACATTGACAGATCTACGTGGCATAGCTCTTGATTCATGACATGTACACAGGTACATGTCAATCATCATAATTAGA---ATTATTGTCATTGTACAAA-ATTAAGATTATTTTTTTTTCAAAATTAAGATTATTAATGTTTATCCTGGT i canFam3.chr3 I 8 C 0 a score=150293.000000 s hg38.chr4_KI270790v1_alt 143441 49 + 220246 CCACAATGTATCAAAGTAGAAAA----GCACTGATCTGTTGGACTTATCTGTA s panTro4.chr4 21529797 49 + 193495092 CCACAATGTATCAAAGTAGAAAA----GCATTGATCTGTTGGACTTATCTGTA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21707267 49 + 198332218 CCACAATGTATCAAAGTAGAAAA----GCATTGATCTATCGGACTTATCTGTA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20319764 49 - 85365473 ctacaatgtattaaagtagaaaa----gcattgatctgtttgacttatctgta i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16784058 49 + 184069350 CCACAATGTATCAAAGTAGAAAA----GCACTGATCTGTTGGACTCATGTGTA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20834041 49 + 189454096 CCACAATGTATCAAAGTAGAAAA----GCACTGATCTGTTGGACTCATGTGTA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16423992 49 + 178775436 CCACAATGTATCAAAGTAGAAAA----GTACAGATCTGTTGgactcatgtgta i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19908007 49 - 48547382 CCACAATGAATCAAAGTAGAAAA----GCACTGATCTGTTGGACTCATGTGTA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21266140 49 - 190850796 CCACAATGTACTGAAGTAGAAAA----GCATTGATCTTTTGGACTTATCTGTA i calJac3.chr3 C 0 C 0 s canFam3.chr3 3840699 50 - 91889043 CTACATCGC-CAAGAGTAAAAAAAAAGGCAT--ATCTTTTGGACCTATCTACA i canFam3.chr3 C 0 C 0 e mm10.chr5 49249205 542 + 151834684 I a score=575560.000000 s hg38.chr4_KI270790v1_alt 143490 161 + 220246 AAATGAGAATAACAGGACTCTGAATGAGGCTCTTTCTTTGAGTCAATGTGTAAGGGTTCATGTACAGACCTC-TGAAAT--CTACTGAGATTCTTTGGAAAC-------TCTCTTGACTTGTCTTTGACCATAATTTGATGTTC-AATGAGTCTGCAGCAAAGTGTTATTAG- s panTro4.chr4 21529846 161 + 193495092 AAATGAGAATAACAGAACTCTGAATGAGGCTCTTTCTTTGAGTCCATGTGTAAGGGTTCATGTACAGACCTC-TGAAAT--CTACTGAGATTCTTTGGAAAC-------TCTCTTGACTTGTCTTTGACCATAATTTGATGTTC-AATGAGTCTGCAGCAAAGTGTTATTAG- i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21707316 161 + 198332218 AAATGAGAATAACAGGACTCTGAATGAGGCTCTTTCTTTGAGTCAATGTGTAAGGGTTCATGTACAGACCTC-TGAAAT--CTACTGAGATTCTTTGGAAAC-------TCTCTTGACTTGTCTTTGACCATAATCTGATGTTC-AATGAGTCTGCAGCAAAGTGTTATTAG- i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20319813 161 - 85365473 aaatgagaataacaggactctgaatgaggctctttctatgagtcagtgtgtaagggttcatgtacagacctc-tgaaat--ctaCTGAGATTCTTTGGAAAC-------TCTCTTGACTTGTCTTTGACCATAATTTGATGTTC-AATGAGTCTGTGGCAAAGTGTTATTAG- i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16784107 161 + 184069350 AAATGAGAATAACAGGACTCTGAATGAGGCTCTTTCTATGAGTCAGTGTGTAAGGGTTCATCTACAGACCTC-TGAAAT--CTGCTGAGATTCTTTGGAAAC-------TCTCTTGACTTGTCTTTGATCGTAATTAGATGTTC-AATGAGTCTGCAGCAAAGTGTTATTAG- i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20834090 161 + 189454096 AAATGAGAATAACAGGACTCTGAATGAGGCTCTTTCTATGAGTCAGTGTGTAAGGGTTCATCTACAGACCTC-TGAAAT--CTGCTGAGATTCTTTGGAAAC-------TCTCTTGACTTGTCTTTGATCATAATTAGATGTTC-AATGAGTCTGCAGCAAAGTGTTATTAG- i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16424041 161 + 178775436 aaatgagaataacaggACTCTGAATGAGGCTCTTTCTATGAGTCAGTGTGTAAGGGTTCATCTACAGACCTC-TGAAAT--CTGCTGAGATTCTTTGGAAAC-------TCTCTTGACTTGTCTTTGATCATAATTAGATGTTC-AATGAGTCTGCAGCAAAGTgttattag- i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19908056 161 - 48547382 AAATGAGAATAACAGGACTCTGAATGAGGCTCTTTCTATGAGTCAGTGTGTAAGGGTTCATCTACAGACCTC-TGAAAT--CTGCTGAGATTCTTTGGAAAC-------TCTCTTGACTTGTCTTTGATCATAATTAGATGTTC-AATGAGTCTGCAGCAAAGTGTTATTAG- i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21266189 156 - 190850796 AAATGACAATAACAGGACTCTGAATGAGGTTTTTTCTATGAGTCAGTGTGTAAAGGTTCATGTACAGGCCTC-TGAAAT--CTAC------TCTTTGGAAAT-------TCTCTTGACTTGTCTTTGACCATCATTTGATGTTCAAATGGATCTGCAGCAAAGTGTTATTAG- i calJac3.chr3 C 0 C 0 s mm10.chr5 49249747 157 + 151834684 AATTGGGAATAATTGGACTCAGAATGTGA---TTACCCTGGGATGGCATGTTATAGTTCAGAAACATGTATT-TTAAGTAACTTCTGATATCCT---ACAGC-------TAACTCAGCATGTTTATTCCCATAATTGAATGGCC-ATTCAATCTACAGAGAAGTGCTACTAG- i mm10.chr5 I 542 I 4427 s canFam3.chr3 3840749 165 - 91889043 ACATGAAAAT-----GACTCTGAGTGAGGATCTTTCTATAGGTCAGTATATGAGCTTTTCTGCAAAGGGCTTATGGAAT--CTACTGGCATCCATTGGAATCTTTTTTTTTTTTTTATTTGCCTTTGCCTGTAATTTAATGTTT-GATGAATCTATGGCACAATGTTATTAAA i canFam3.chr3 C 0 C 0 a score=-5576.000000 s hg38.chr4_KI270790v1_alt 143651 28 + 220246 TGTTTTATCAAATGG-TTTAAACAT------AAtt s panTro4.chr4 21530007 28 + 193495092 TGTTTTATCAAATGG-TTTAAACAT------AAtt i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21707477 28 + 198332218 TGTTTTATCAAATGG-TTTAAACAT------Attt i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20319974 26 - 85365473 TGTTTTATCAAATGG-TTTAAACAt--------tt i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16784268 2 + 184069350 TG--------------------------------- i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20834251 2 + 189454096 TG--------------------------------- i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16424202 2 + 178775436 tg--------------------------------- i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19908217 34 - 48547382 TGTTTTAGCAAATGG-TTTAAACAttttttttttt i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21266345 28 - 190850796 TATTTTGTCAAATAG-CTTAAACAT------ACTT i calJac3.chr3 C 0 C 0 s canFam3.chr3 3840914 29 - 91889043 TTTTTTATCAATTATCTTTGAACAG------AATC i canFam3.chr3 C 0 C 0 e mm10.chr5 49249904 4427 + 151834684 I a score=3268.000000 s hg38.chr4_KI270790v1_alt 143679 4 + 220246 tttt s panTro4.chr4 21530035 4 + 193495092 tttt i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21707505 4 + 198332218 tttt i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20320000 4 - 85365473 tttt i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16784270 2 + 184069350 --Gt i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20834253 3 + 189454096 -ttt i macFas5.chr5 C 0 C 0 s chlSab2.chr27 19908251 4 - 48547382 tttt i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21266373 4 - 190850796 TTAA i calJac3.chr3 C 0 C 0 e mm10.chr5 49249904 4427 + 151834684 I e canFam3.chr3 3840943 0 - 91889043 C e papAnu2.chr5 16424204 0 + 178775436 C a score=684465.000000 s hg38.chr4_KI270790v1_alt 143683 304 + 220246 tttttttttttgagacggagtctcgctttgtcgccaggctgcagtgcagtggaacgatctcggctcagtgcaacctctgcctcccaggttcaagcaattctcctgcctcagcttcctgagtagctgggattacaggcacgtgtcaccacacccagctaatttttgtattttgagtagagacgaggtttcaccatgttggccaggattgtctcaatctcctgaccttgtgatcctcccgccttggcctcccaaagtgctgcgattataggcgtgagccaccgctcccagccTAAATGTAATTTTA s panTro4.chr4 21530039 302 + 193495092 ttttttttt--gagacggagtctcgctttgtcgccaggctgcagtgcagtggcacgatctcggctcagtgcaacatctgcctcccaggttcaagcaattctcctgcctcagcttcctgagtagctgggattacaggcacgtgtcaccacgcccagctaatttttgtattttgagtagagacggggtttcaccatgttggccaggattgtctcaatctcctgaccttgtgatcctcccgccttggcctcccaaagtgctgcgattataggcatgagccaccgctcccagccTAAATGTAATTTTA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21707509 303 + 198332218 ttttttttt-tgagacggagtctcgctttgtcgccaggctggagtgcagtggcatgatctcggctcagtgcaacctctgcctcccaggttcaagcaattctcctgcctcagcttcctgagtagctgggattacaggcacgtgtcaccatgcccagctaatttttgcattttgagtagagacgatgtttcaccatgttggccaggatggtctcaatctcctgaccttgtgatcctcctgccttggcctcccaaagtgctgcgattataggcgtgagccacagctcccATCCTAAATGTAATTTTA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20320004 303 - 85365473 ttttttttt-tgagacagagtctcgctttgtcgccaggctggagtgcagtagcatgatgtcggctcactgcaacctctgcctcccaggttcaagcaattatcttgcctcagcctcctgagtagctgggattacaggcatgtgtcaccacacccagctaatttttgtatttttagtagagatgaggtttcaccattttggccaggatactctcaatctcctgacctcgtgatcctcccgccttggcctcccaaaatgctgcgattataggcgtgagccactgctcccagccTAAATGTGATTTTA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16784272 296 + 184069350 ttttttttt-tgagatggagtctcactttgtcactaggctggagtgcagtgtcacgatcttggctcactgcaacctctgcctcccagtttcaagcaattctcctgcctcagt-------gtaactgggcctacaggcacgtgtcaccatgcccagcgaatttttgtatttttagtagagactgcgtttcaccatgttggccaggatggtatcaatctcctgacctcatgatcctctcgccttggcctcccaaagtgctgcgattacaggcgtgagccactgctcccagccTAAACGTAATTTTA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20834256 296 + 189454096 ttttttttt-tgagatggagtctcactttgtcactaggctggagtgcagtgtcacgatcttggctcactgcaacctctgcctcccagtttcaagcaattctcctgcctcagt-------gtaactgggactacaggcacgtgtcaccatgcccagctaatttttgtatttttagtagagactgcgtttcaccatgttggccaggatggtatcaatctcctgacctcatgatcctctcgccttggcctcccaaagtgctgcgattacaggcgtgagccactgctcccagccTAAACATAATTTTA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16424204 295 + 178775436 -tttttttt-tgagatggagtctcactttgtcactaggctggagtgcagtgtcacgatcttggctcactgcaacctctgcctcccagtttcaagcaattctcctgcctcagc-------gtagctgggactacacgcatgtgtcaccatgcccagctaatttttgtatttttagtagagactgcgtttcaccatgttggccaggatggtatcaatctcctgacctcatgatcctctcgccttggcctcccaaagtgctgcgattacaggcgtgagccactgctcccagcctaaacataatttta i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19908255 296 - 48547382 ttttttttt-tgagatggagtctcactttgtcactaggctggagtgcagtgtcatgatcttggctcactgcaacctctgcctcccagtttcaagcaattctcctgcctcagc-------atagctgggactacaggcacgtgtcaccatgcccagctaatttttgtaattttagtagagactgtgtttcaccatgttggccaggatggtctcaatctcctgacctcatgatcctctcgccttggcctcccaaagtgctgcgattacaggcgtgagccactgctcccagccTAAACATAATTTTA i chlSab2.chr27 C 0 C 0 e mm10.chr5 49249904 4427 + 151834684 I e calJac3.chr3 21266377 0 - 190850796 C e canFam3.chr3 3840943 0 - 91889043 C a score=3276.000000 s hg38.chr4_KI270790v1_alt 143987 1 + 220246 T s panTro4.chr4 21530341 1 + 193495092 T i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21707812 1 + 198332218 T i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20320307 1 - 85365473 T i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16784568 1 + 184069350 T i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20834552 1 + 189454096 T i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16424499 1 + 178775436 t i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19908551 1 - 48547382 T i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21266377 1 - 190850796 T i calJac3.chr3 C 0 C 0 e mm10.chr5 49249904 4427 + 151834684 I e canFam3.chr3 3840943 0 - 91889043 C a score=347176.000000 s hg38.chr4_KI270790v1_alt 143988 100 + 220246 TTAAGATACAC-AGCATACAGATAAATATTGAAAGCAATAAAAATTCTACAAC-ACCAGATAAACTTTCTAGAAGCAGACTTTTAAAGACCTCATTAAACAT s panTro4.chr4 21530342 100 + 193495092 TTAAGATACAC-AGCATACAGATAAATATTGAAAGCAATAAAAATTCTACAAC-ACCAGATAAACTTTCTAGAAGCAGACTTTTAAAGACCTCATTAAACAT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21707813 100 + 198332218 TTAAGATACAC-GGCATACAGATAAATATTGAAAGCAATAAAAATTCTACAAC-ACCAGATCAACTTTCTAGAAGCAGACTTTTAAAGACCTCATTAAACAT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20320308 100 - 85365473 TTAAGATACAC-AGCATACAGATAAATATTGAAAGCAATAAAAATTCTACAAC-ACCAGATAAACTTTCTAGAAGCAGACTTTTAAAGACCTCATTAAACAT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16784569 100 + 184069350 TTAAGATACAC-GGCATACAGCTAAATATTGAAAGCAATAAAAATTCTACAAC-ACTAGATAAACTTTCTGGAAGCAGACTTTTAAAGACCTCATTAAACAT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20834553 100 + 189454096 TTAAGATACAC-GGCATACAGCTAAATATTGAAAGCAATAAAAATTCTACAAC-ACTAGATAAACTTTCTAGAAGCAGACTTTTAAAGACCTCATTAAACAT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16424500 100 + 178775436 ttaagataCGC-GGCATACAGCTAAATATTGAAAGCAATAAAAATTCTACAAC-ACTAGATAAACTTTCTAGAAGCAGACTTTTAAAGACCTCATTAAACAT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19908552 100 - 48547382 TTAAGATACAC-GGCATACAGCTAAATATTGAAAGCAATAAAAATTCTACAAC-ACTAGATAAACTTTCTAGAAGCAGACTTTTAAAGACCTCATTAAACAT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21266378 100 - 190850796 TTAAGATGTAC-AGAATATACATAAATACTGAAAACAATAAAAATTCTACAAC-ATCAGATAAACTTTCTAGAAGCAGACATTCAAAGACCTCATTAAACAT i calJac3.chr3 C 0 I 417 s canFam3.chr3 3840943 88 - 91889043 TTAAGATACATAAGCATACAGATAAATATTGAAAACAAGGGAAATCTTACAACTACCCCATAAACTTTCCAGAAGCAAACATTGAAAG-------------- i canFam3.chr3 C 0 C 0 e mm10.chr5 49249904 4427 + 151834684 I a score=375793.000000 s hg38.chr4_KI270790v1_alt 144088 126 + 220246 ACTAAACATACTGTAATTTTACTTCTGCAGGAGGTAAAATGATTGTTTATCTAACTTGGAGAAGCCTTCCATTTCATCTTAAGTAATGC-ATCTGT------------------AAACATAATAAAGTTCCAGCCTGTGA-----------------------------------AGAGA s panTro4.chr4 21530442 126 + 193495092 ACTAAACATACTGTAATTTTACTTCTGCAGGAGGTAAAATGATTGTTTATCTAACTTGGAGAAGCCTTCCATTTCATCTTAAGTAATGC-ATCTGT------------------AAACATAATAAAGTTCCAGCCTGTGA-----------------------------------AGAGA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21707913 125 + 198332218 ACTAAACACACTGTAATTTTACTTCTACAGGAGGTAAAATGATTGTTTATCTAACTTGGAGAAACCTTCCATTTCATCTTAAGTAATGC-ATCTGT------------------AAACATAATAAAGTTCCAGCCTGTGA-----------------------------------AGAG- i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20320408 125 - 85365473 ACTAAACATACTGTAATTTTACTTCTATAGGAGATAAAATGATTGTTTATCTAACTTGGAGAAACCTTCCATTTCATCTTAAGTAATGC-ATCTGT------------------AAACATAATAAAGTTCCAGCCTATGA-----------------------------------AGAG- i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16784669 157 + 184069350 ACTAAACATACTGTAAGTTTACTTCTATAGGAAGTAAACTGATCATTTATCTAACTTGGAGAAACTTTCCATTTCATCTTAAGTAATGC-ATCTGTACTATATTATACACAGGGAAACATAAT--AGTTCCAGCCTGTGA--------------------acatcacatcacatcacatc i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20834653 154 + 189454096 ACTAAACATACTGTAAGTTTACTTCTATAGGAAGTAAACTGATCATTTATCTAACTTGGAGAAACTTTCCATTTCATCTTAAGTAATGC-ATCTGTACTATATTATACACAGGGAAACATAATAAAGTTCCAGCCTATGA-------------------------AGAAcacatcacatc i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16424600 179 + 178775436 ACTAAACATACTGTAAGTTTACTTCTATAGGAAGTAAACTGATCATTTATCTAACTTGGAGAAACTTTCTATTTCATCTTAAGTAATGC-ATCTGTACTATATTATACACAGGGAAACATAATAAAGTTCCAACCTATGAAGaacacatcacatcacatcacatcacatcacatcacatg i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19908652 144 - 48547382 ACTAAACATACTGTAAGTTTACTTCTATAGGAAGTAAACTGATCATTTATCTAACTTGGAGAAACTTTCCATTTCATCTTAAGTAATGC-ATCTGTACTATATTATACACAGGGAAACATAATAAAGTTCCAGCCTATGA-----------------------------------AGAAc i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21266895 143 - 190850796 ACTAAACATACTGTCATTTTACTTCTATAGGAGGTAAACTGATTGTTTATTTAACTTGGAGAAAACTTTCATTTCATTTTAAGTAATGC-ATCTGTACTATATTACACACAGGGAAACATAACAAAGTTCCAACCTATGA-----------------------------------AGAG- i calJac3.chr3 I 417 C 0 s canFam3.chr3 3841031 144 - 91889043 ATTCAACACAGAAGCACTTTACTTCTAGGGGAGGTAAGTGGATGGCTTATTAAAGTTGAAGAA-CTCACCACTCTATTGTAAGTGATGTGACCTGCACTCTACTATATACAGGAAGACATAATAAAGCTCAAATCTATAA-----------------------------------AAATA i canFam3.chr3 C 0 C 0 e mm10.chr5 49249904 4427 + 151834684 I a score=881517.000000 s hg38.chr4_KI270790v1_alt 144214 317 + 220246 acatcacatcacatcacatcacatcacatAGGGCACATCCC-------------------------tt---------ttttatttttttgagactgagtctcactgtattgcccaggctggagtgcaatggcacgatctcagctcactgcaacctccacctcctgggttcaagtgattctccttccttagcttcctgagtagctgagattac-------------caggcctggctaatttttatatttttagtagagacggggtttcaccatgttggccaggctggtcttggactcttgaccttgtcatctggccacctcagccccccaaagtgttgggattacaggcatgagccaccgcgcc s panTro4.chr4 21530568 317 + 193495092 acatcacatcacatcacatcacatcacatAGGGCATATCCC-------------------------tt---------ttttatttttttgagactgagtctcactgtattgcccaggctggagtgcaatggcacgatctcagctcactgcaacctccacctcctgggttcaagtgattctccttccctagcttcctgagtagctgagattac-------------caggcctggctaatttttatatttttagtagagacagggtttcaccatgttggccaggctggtcttggactcttgaccttgtcatctggccacctcagccccccaaagtgttgggattacaggcatgagccaccgcgcc i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21708038 325 + 198332218 ---------cacatcacatcacatcacatAGGGCATATCCCtt---------------------tttt---------ttttttttttttgagactgagtctcactgtattgcccaggctggagtgcaatggcacgatctcagctcactgcaacctccacctcctgggttcaagtgattctccttcctcagcctcctgagtagctgagattacaggcgcccaccgtcaggcctggctaatttttatatttttagtagagatggagtttcaccatgttggccaggctggtcttggactcttgaccttgtgatctgctcacctcagccccccaaagtgttgggattacaggcatgagccaccacgcc i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20320533 330 - 85365473 ---------CATATCACATCACATCACATAGGGCATATCTC-------------------------TTGTTTTTCCAttttttttttttgagactgagtctcactatattgcccaggctggagtgcaatggcacaatctcagctcactgcaacctccacctcctgggttcaagtgattctccttcctcagcctcctgagtagctgagattacaggcacccaccaccatgcccagctaatttttatatttttagtagatatggagtttcaccatgttggccaggctggtcttgaactcttgaccttgtgatctgcccacctcagccccccaaagtgttgggataacaggcatgagccaccgcAGC i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16784826 335 + 184069350 acatcacatcacatcacatcacatcacatAGTGCATATCCCACt-------------------ttttt---------ttttctttttttgagaatgaatctcatggtattgcccaggctagagtgcaatggcatgatctcagttcactgcaacctccacctcctgggttcaagtgattctcctgcctcagcttcctgagtagctcagattacaggtgcccaccaccatgcctggctaatttttatatttttagtagagacaga-tttcaccatgttggcccggctagtcttgaactcttgaccttgtgatttgaccacctcagccccacagagtattgggattacaggcgtgatccaccacgcc i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20834807 334 + 189454096 acatcacatcacatcacatcacatcacatAGTGCATATCCCAC--------------------ttttt---------ttttctttttttgagaatgaatctcatggtattgcccaggctagagtgcaatggcatgatctcagttcactgcaacctccacctcctgggttcaagtgattctcctgcctcagcttcctgagtagctcagattacaggtgcccaccaccatgcccggctaatttttatatttttagtagagacaga-tttcaccatgttggccaggctagtcttgaactcttgaccttgtgatttgcccacctcagccccacagagtattgggattacaggcgtgatccaccacgcc i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16424779 333 + 178775436 acatcacatcacatcacatcacatcacatagTGCATatcccac---------------------tttt---------ttttctttttttgagaatgaatctcatggtattgcccaggctagagtgcaatggcatgatctcagttcactgcaacctccacctcctgggttcaagtgattctcctgcctcagcttcctgagtagctcagattacaggtgcccaccaccatgcccggctaatttttatatttttagtagagacaga-tttcaccatgttggccaggctagtcttgaactcttgaccttgtgatttgcccacctcagccccacagagtattgggattacaggcgtgatccaccacgcc i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19908796 334 - 48547382 acatcatatcacatcacatcacatcacatAGTGCATATCCCAC--------------------ttttt---------ttttctttttttgagaatgaatctcatggtattgcccaggctagagtgcaacggcatgatctcagttcactgcaacctccacctcctgggttcaagtgattctcctgcctcagcttcctgagtagctctgattacaggtgcccaccaccatgcccggctaatttttatatttttagtagagacaga-tttcaccatgttggccaggctagtcttgaactcttgaccttgtgatctgcccacctcagccccacagagtattgggattacaggcgtgatccaccacgcc i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21267038 345 - 190850796 ---------cacatcacatcacatcacatAGTGCATATCCCTTTTTTtttctttctttctttctttct---------ttctttttttatgagattgagcctcactctattgcctaggctggagtgcaatgatgcaatcttgggtcactgcaacctctg-ctcctgggttcaatcaattctcttgcctcagcctcctaagtagctgggattacaggcgcccacaaccacgcccagctaatttttgtatttttagtagagacagggtttcactatgctggccaggctggtttggaactcttgacctcgtgatctgcccatcttagcctcccagaatgctagggttacaggcatgagccactgtgtc i calJac3.chr3 C 0 C 0 e mm10.chr5 49249904 4427 + 151834684 I e canFam3.chr3 3841175 0 - 91889043 C a score=64033.000000 s hg38.chr4_KI270790v1_alt 144531 18 + 220246 aggccCACATAGTGCATA s panTro4.chr4 21530885 18 + 193495092 aggccCACATAGTGCATA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21708363 18 + 198332218 aggccCACATAGTGCATA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20320863 18 - 85365473 AGGACCACATAGTGCATA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16785161 18 + 184069350 aggccCACATAGTGCATA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20835141 18 + 189454096 aggccCACATAGTGCATA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16425112 18 + 178775436 aggcccacaTAGTGCATA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19909130 18 - 48547382 aggccCACATAGTGCATA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21267383 18 - 190850796 caaccTACATAGTTCATA i calJac3.chr3 C 0 C 0 s canFam3.chr3 3841175 18 - 91889043 AGATCTACATAATGCATA i canFam3.chr3 C 0 C 0 e mm10.chr5 49249904 4427 + 151834684 I a score=925062.000000 s hg38.chr4_KI270790v1_alt 144549 358 + 220246 TCCTTTAATACAACACACTTTGGTTTTGATGGGGTGGGGGCAGAATAGTGAAGCATACAGCATGACATCATTGAGGATCACAGGCCTG-----AATTCCCtcactgcattgccctgtgacctctgtctcccttgtgaagtgacaaggtcggtctaaatctttccttcagctttaggatttcaatgattctgtaaGTTTTCTCCAATAAGAGGTTGGTTTTGCAATAGAATTTTAA-AGTCAGTTTGCCAATGTATTCTATAGATAAAACTGAATTAGTAAGTGGACCTGTTCAAAGTCTCTCTCAACAATATGTATAATTTAATTAGCAGTTTAAAAAGTAGACCATTGATTATTAGATCAGCC s panTro4.chr4 21530903 357 + 193495092 TCCTTTAATACAACACACTTTGGTTTTGATGGGGTGGGGGCGGAATAGTGAAGCATACAGCATGACATCATTGAGGATCACAGGCCTG-----AATTCCCTCACTGCATTGCCCTGTGACCTCTGTCTCCTTTGTGAAGTGACAAGGTTGGTCTAAATCTTTCCTTCAGCTTTAGGATTTCAATGATTTTGTAAGTTTTCTCCAATAA-AGGTTGGTTTTGCAATAGAATTTTAA-AGTCAGTTTGCCAATGTATTCTATAGATAAAACTGAATTAGTAAGTGGACCTGTTCAAAGTCTCTCTCAACAATATGTATAATTTAATTAGCAGTTTAAAAAGTAGACCATTGATTATTAGATCAGCC i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21708381 358 + 198332218 TCCTTTAATACAACACATTTTGGTTTTGATGGGGTGGGGGCAGAATAGTGAAGCATACAGCATGACGTCATTGAGGATCACAGGCCTG-----AATTCCCtcactgcattgccctgtgacctctgtctcccttgtgaagtgacaaggtcagtctaaatctttccttcagctttaggatttcaatgattctgtaaGTTTTCTCCAATAAGAGGTTGGTTTTGCAATAGAATTTTAA-AGTCAGTTTGCCAATGTATTCTACAGATAAAACTGAATTAGTAAGTGGACCTGTTCAAAGTCTCTCTAAACAATATGTATAATTTAATAAGCAGTTTAAAAAGTAGACCATTGATTATTAGATCAGCC i ponAbe2.chr4 C 0 C 0 s rheMac3.chr5 16785179 346 + 184069350 TCCTTTAATACAACATACTTTTGTTTTGATGGGGTGGCGGCAGGTAAGTGAAGCATACAGCACGAGGTCATTGAGGATCACAGGCCTG-----AATTCCCtcactgtattgccctgtgacctctgtttcctttgtaaactgacaaggtcggtctaaatctttccttcagctttaggatttcaatgattctgtaaGTTTTCTCCAATAAGAGGTTGGTTTTACAGTAGAATTTTAA-AGTCAGTTTGCCAATGTATTCTACAGATAAAACTGAATTAGTGAGTGGACCTGTTCAAAGTCTCTCTAAACAATATGTATAA------------TTTAAAAAGTAGACTGTTGATTATTAGATCAGCT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20835159 346 + 189454096 TCCTTTAATACAACATACTTTTGTTTTGATGGGGTGGCGGCAGGTAAGTGAAGCATACAGCACGAGGTCATTGAGGATCACAGGCCTG-----AATTCCCtcactgtattgccctgtgacctctgtttcctttgtaaactgacaaggtcggtctaaatctttccttcagctttaggatttcaatgattctgtaaGTTTTCTCCAATAAGAGGTTGGTTTTACAGTAGAATTTTAA-AGTCAGTTTGCCAATGTATTCTACAGATAAAACTGAATTAGTGAGTGGACCTGTTCAAAGTCTCTCTAAACAATATGTATAA------------TTTAAAAAGTAGACTGTTGATTATTAGATCAGCT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16425130 346 + 178775436 TCCTTTAACACAACATACTTTGGTTTTGATGGGGTGGCGGCAGGTAAGTGAAGCATACAGCACGAGGTCATTGAGGATCACAGGCCTG-----AATTCCCTCACTGTATTGCCCTGTGACCTCTGTTTCCTTTGTAAACTGACAAGGTCGGTCTAAATCTTTCCTTCAGCTTTAGGATTTCAATGATTCTGTAAGTTTTCTCCAATAAGAGGTTGGTTTTACAGTAGAATTTTAA-AGTCAGTTTGCCAATGTATTCTACAGATAAAACTGAATTAGTGAGTGGACCTGTTCAAAGTCTCTCTAAAcaatatgtataa------------tttaaaaagtagactGTTGATTATTAGATCAGCT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19909148 358 - 48547382 TCCTTTAATACAACATACTTTGGTTTTGATGGGGTGGCGGCAGGTAAGTGAAGCATACAGCACGAGGTCATTGAGGATCACAGGCCTG-----AATTCCCTCACTGTATTGCCCTGTGACCTCTGTTTCCCTTGTAAACTGACAAGGTCGGTCTAAATCTTTCCTTCAGCTTTAGGATTTCAATGATTCTGCAAGTTTTCTCCAATAAGAGGTTGGTTTCACAGTAGAATTTTAA-AGTCAGTTTGCCAATGTATTCTACAGATAAAACTGAATTAGTGAGTGGACCTGTTCAAAGTCTCTCTAAACAATATGTATAATTTAATTAGCAGTTTAAAAAGTAGACTGTTGATTATTAGATCAGCT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21267401 353 - 190850796 TTCTTTACTACAACATACTTTGG-TTCGATGGGGTGGGGGCTAAATAGTGA---ATACAGCAGGGCGTCATTGAGGACCACAGGCCTG-----AACTTCCTCACTGTATTGCCCTGTGACCTCTGTCTCCCTTGTGAACTAACAGGGTCGGTCTGAATCTTTCCTTCAGCTTTAGGATTTCAATGATTCCATAAGTTTTCCCTAATAAGAGGTTGGTTTTGCAAGAGAATTTTAA-AGTCAGTCTGCAAATGTATTCTA-AGATAAAACTGAATTAGTAAGTAGACCTGTTCAAAGTCTCTTGAAACAATATGTATAATTTAATTAGCAGTTTGAAAAGTAGGCCACTGATTATTAGATTAGCC i calJac3.chr3 C 0 C 0 s canFam3.chr3 3841193 335 - 91889043 TTCCCTAATACAACATACTTTGGTCTTGGGGGGGTTGG-------------------CAGCCCAGGGTCAT----GAGCACGAGAATGAGGGAAATTGCCTGAGCGTATTGGCCTGTGACCTCTGCCTTTCTTGTGAAATCACAGAACTGGTCTAAATCTTCTCTGCTGCTTAAGGACTTTAATGATTCTGTAAGTGTTCTCCAATAAGTGGTTGGTAATGCAAAAGAATTACAACAGTCAGTTTGCAAATGTATCCTCCTTTCGAAACTGAATTAGTAAATAGAC-----CAAAGTCTCTCAAAATAATATAT-TTTTTTATGCAGCAGCTCACAGAGTAGTCCATTGATTATTAGATTAGCC i canFam3.chr3 C 0 I 2624 e mm10.chr5 49249904 4427 + 151834684 I e nomLeu3.chr20 20320881 0 - 85365473 C a score=536077.000000 s hg38.chr4_KI270790v1_alt 144907 240 + 220246 ACCTGTAG------------------------------------------------------------------------------------------------------AAAATATGCTTTTGTGCATTTTATGGTGTGATATTTTCTTTCAAAAGTGTTACTCTGTGTACATTATGTCATTTTGGCATAAATATTTTGTTTATCAGAGCATCTCATTGCCTAAACATATGAGACAAAAGATAATATGATTATCTTATATATTTTGATTAGATCTAGTGAAGTTAAAACTAATTTTTAAAAACCTAAATCTTGGGTTAATTTGATTCAAAGCAGTTTTAAC s panTro4.chr4 21531260 240 + 193495092 ACCTGTAG------------------------------------------------------------------------------------------------------AAAATATGCTTTTGTGCATTTTATGGTGTGATATTTTCTTTCAAAAGTGTTACTCTGTGTACATTATGTCATTTTGGTATAAATATTTTGTTTATCAGAGCATCTCATTGCCTAAACATATTAGACAAAAGATAATATGATTATCTTATATATTTTGATTAGATCTATTGAAGTTAAAACTAATTTTTAAAAACCTAAATCTTGGCTTAATTTGATTCAAAGCAGTTTTAAC i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21708739 240 + 198332218 ACCTGTAG------------------------------------------------------------------------------------------------------AAAATATGCTTTTGTGCATTTTATGGTGTGATATTTTCTTTCAAAAGTGTTACTCTGTGTACATTATGTCATTTTGGTATAAACATTTTGTTTATCAGAGCATCTCATTGCCTAAACATAAGAGACGAAAGATAATATGATTATCTTATATATTTTGATTAGATCTATTGAAGTTAAAACTAATTTTTAAAAACCTAAATCTTGGGTTAATTTGATTCAAAGCAGTTTTAAC i ponAbe2.chr4 C 0 C 0 s rheMac3.chr5 16785525 240 + 184069350 ACCTGTAG------------------------------------------------------------------------------------------------------AAAATATGCTTTTGTGCATATTATGGTGTTATATTTTCTTTAAAAAGTGTTACTCTGTGTACATTATGTCATTTTGATATAAACATTTTGTTTATCAGAGCATCTCATTGCCTAAACATACGAGACAAAAGATAATATGATTATCTTATATATTTTAATTAGATCCATTGAAGTTAAAACTAATTTTTAAAAACCTAAATCTTGGGTTAATTTGATTCAAAGCAGTTTTAAC i rheMac3.chr5 C 0 M 291 s macFas5.chr5 20835505 240 + 189454096 ACCTGTAG------------------------------------------------------------------------------------------------------AAAATATGCTTTTGTGCATATTATGGTGTTATATTTTCTTTAAAAAGTGTTACTCTGTGTACATTATGTCATTTTGATATAAACATTTTGTTTATCAGAGCATCTCATTGCCTAAACATACGAGACAAAAGATAATATGATTATCTTATATATTTTAATTAGATCCATTGAAGTTAAAACTAATTTTTAAAAACCTAAATCTTGGGTTAATTTGATTCAAAGCAGTTTTAAC i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16425476 240 + 178775436 ACCTGTAG------------------------------------------------------------------------------------------------------AAAATATGCTTTTGTGCATATTATggtgttatattttctttaaaaagtgttacTCTGTGTGCATTAtgtcatttttatataaacattttgtttatcagaGCATCTCATTGCCTAAACATACGAGACAAAAGATAATATGattatcttatatattttaattagatccattgaagttaaaactaatttttaaaaacctaaatctTGGGTTAATTTGATTCAAAGCAGTTTTAac i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19909506 235 - 48547382 ACCTGTAG------------------------------------------------------------------------------------------------------AAAATATGCTTTTGTGCATATTATGGTATTATATTTTCTTTAAAAAGTGTTACTCTGTGTACATTATGTCATTTTGATATAAACAT----TTTATCAGAGCATCTCTTTGCCTAAACATATGAGACAAAAGATAATATGATTATCTTATATATTTTAATTAGATCCATTGAAGTTAAAAC-AATTTTTAAAAACCTAAATCTTGGGTTAATTTGATTCAAAGCAGTTTTAAC i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21267754 342 - 190850796 ACCTGTAGAAAATCAAAATATGCTgccgggcatggcggctcacacctgtaatccaagcactttgcaggccacgtaggtggatcacctgaggtcgggagctcaagaAAACCAAAATAAGCTTTTGGGCATTTTATGGCGTTTCATTTTCTTTAAAAAGTGTTACTCTGTGTATATTATATTATTTTGGTACAAATATTTTGTTTATCAGAGCAGCTTATTGCCTAAATATATGAGATAAAAGATAATGTGATTATCttatatatttttattagatatactaatattaaaactaatttttaaaaaCCTAAATCTTAGCTGAATTTGATTCAAAGCAGTTTTAAC i calJac3.chr3 C 0 C 0 e mm10.chr5 49249904 4427 + 151834684 I e canFam3.chr3 3841528 2624 - 91889043 I e nomLeu3.chr20 20320881 0 - 85365473 C a score=10191.000000 s hg38.chr4_KI270790v1_alt 145147 6 + 220246 CATAAA s panTro4.chr4 21531500 6 + 193495092 CATAAA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21708979 6 + 198332218 CATAAA i ponAbe2.chr4 C 0 C 0 s macFas5.chr5 20835745 6 + 189454096 CATAAA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16425716 6 + 178775436 cacaaa i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19909741 6 - 48547382 CATAAA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21268096 6 - 190850796 CATAAG i calJac3.chr3 C 0 C 0 e mm10.chr5 49249904 4427 + 151834684 I e rheMac3.chr5 16785765 291 + 184069350 M e canFam3.chr3 3841528 2624 - 91889043 I e nomLeu3.chr20 20320881 0 - 85365473 C a score=539768.000000 s hg38.chr4_KI270790v1_alt 145153 281 + 220246 TTTTTAAAATCTTACTAAGAATCTCTCATCTCTTTATTCATACTCCTGGATGAAGCTAACAGATGCATATTCTTCAAGTGCAGTTCTGATTATGCATTTTTTTGAATGAATACATTTAATGGTTACCTTACTAGTTTTTCAATAAAATAACAACCTCTTAGCCTGGTAGTCAAGTCCATTTTATTTCTATCTTCATTTCTC---CTCAGCATTAATTTTCATTATTTTTAATGCATCAAATACA-Ttttctaagccaccatttcttcatctagagatttggataa s panTro4.chr4 21531506 281 + 193495092 TTTTAAAAATCTTACTAAGAATCTCTCATCTCTTTATTCATACTCCTGGATGAAGCTAACAGATGCATATTCTTCAAGTGCAATTCTGATTATGCATTTTTTTGAATGAATACATTTAATGGTTACCTTACTAGTTTTTCAATAAAATAACAACCTCTTAGCCTGGTAGTCAAGTCCATTTTATTTCTATCTTCATTTCTC---CTCAGCATTAATTTTCATTATTTTTAATGCATCAAATACA-Ttttctaagccaccatttcttcatctagagatttggataa i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21708985 280 + 198332218 TTTTTGAAATCTTACTAAGAATCTCTCATCTCTTTATTCATACTCCTGGATGAAGCTAACAGATGTATCTTCTTCAAGTACAATTCTGATTATGCA--TTTTTGAATGAATACATTTAATGGTTACCTTACTAGTTTTTCAATAAAATAACAACCCCTTAGCCTGGTAGTCAAGTCCATTTTATTTATACCTTCATTTCCC---CTCAGCATTAATTTTCATTATTTTTAATGCATCAAATACatttttctaagccaccatttcttcatctagagatttggataa i ponAbe2.chr4 C 0 C 0 s macFas5.chr5 20835751 279 + 189454096 TTTTTTAAATCTTACTAAGAATCTCTCATCTCTTTATTCATACTCCTGGATGAAGCTAACAGATGAATCTTCCTCAAGTACGATTCTGATCATGCATTTTTTCGAATGAATACATTTAATGATTATCTTACTAGTTTTTCAATAAAATAA-GACCTCTTAGCCTGGTAGTCAAGTCCATTTTATTTCTATCTTCA-TTCTC---CTCAGCATTAATCTTCATTATTTTTAATGCATCAAATATA-TTTTCTAAACCACCATTTCTTCATCTAGAGATTTGGATAA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16425722 280 + 178775436 ttttttaaatcttactaaGAATCTCTCATCTCTTTATTCATACTCCTGGATGAAGCTAACAGATGAATCTTCCTCAAGTACGATTCTGATCATGCATTTTTTCGAATGAATACATTTAATGATTATCTTACtagtttttcaataaaataa-gacCTCTTAGCCTGGTAGTCAAgtccattttatttctatcttcatTTCTC---CTCAGCAttaatcttcattatttttaatgcatcAGATATA-TTTTCTAAACCACCATTTCTTCATCTAGAGATTTGGATAA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19909747 280 - 48547382 TTTTTAAAATCTTACTAAGAATCTCTCATCTCTTTATTCATACTCCTGGATGAAGCTAACAGATGAATCTTCCTCAAGTACGATTCTGATCATGCATTTTTTCGAATGAATATATTTAATGATTATCTTACTAGTTTTTCAATAAAATAA-GACCTCTTAGCCTGGTAGTCAAGTCCATTTTATTTCTATCTTCATTTCTC---CTCAGCATTAATCTTCATTATTTTTAATGCATCAAATATA-TTTTCTAAACCACCATTTCTTCATCTAGAGATTTGGATAA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21268102 274 - 190850796 TTTAAAAAATCTTACTAAGAATCTTTCATCTCTTCATTAATAGTCCTAGATGGAGCTAAGAGATGAATTTTCTTCAAGTACAATTCTGATCATGCATTTTCTTGAACTAATAC-TTTAATGG-----TTACTAGTTTTTCAACAAAATAAGGTTCTCTTAGCCTGGTAGTCGACTCCATTTTATTTCTATCTTCATTTCTG---CTCAGCATTAATTTTCATTATTTTT-ATGCATCAAATACA-Ttttctgagccaccatttcttcatttagagatttggataa i calJac3.chr3 C 0 I 35 s canFam3.chr3 3844152 261 - 91889043 tTTTAAAAATCTTACTAAGGATCTCTTATATCTTCATT--TGGTCCTAGTAGAGCTAAAAAGATGAATCTTCCACAAATATGATTCTGATCATGCATT----------AATA---TTAATG--CACCTTATTAGTTTTTATATAAAATAACAGACTCCTCTGCTGGTTTTCAAACCCATCCCATTTTTATCCTCATTTCTCCTTCTCACCCTTAACTTCCATTActttg-gtacatcaaataaa----cctgggcta--gttttctcagctggatgtttggataa i canFam3.chr3 I 2624 C 0 e mm10.chr5 49249904 4427 + 151834684 I e rheMac3.chr5 16785765 291 + 184069350 M e nomLeu3.chr20 20320881 0 - 85365473 C a score=820563.000000 s hg38.chr4_KI270790v1_alt 145434 330 + 220246 taa---------------------cttctacattttaggtaatttt-------------------------------------------------------gaagattaagaaaaattaaatttctgtggcctag-ggtgagtacttaataaaccacaattattgattgttattattattTTTGAGACCCCATGATAAAAAGAATATGCTTACTTTAACAGaagaaaacatggtttcaagtcctataccttacttgtta-ttcctca-tttcaggtaggttaattaatcttcctgtgctctcatttatttatttgtaaagtggttatagtaGATGATTAATTAATAAGAGGATGGAC-----TTAAATACTTGAGGAGAGGACTCTAGCTAAAAGCACCAACAAGAGTTTGTTT s panTro4.chr4 21531787 330 + 193495092 taa---------------------cttctacattttaggtaatttt-------------------------------------------------------gaagattaaGAAAAATTAAATTTCTGTGGCCTAG-GGTGAGTACTCAATAAACCACACTTATTGATTGTTATTATTATTTTTGAGACCCCATGATAAAAAGAATATGCTTACTTTAACAGaagaaaacatggtttcaagtcctataccttacttgtta-ttcctca-tttcaggtaggttatttaatcttcctgtgctctcatttatttatttgtaaagtggttatagtaGATGATTAATTAATAAGAGGATGGAC-----TTAAATACTTGAGGAGAGGACTCTAGCTAAAAGCACCAATAGGAGTTTGTTT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21709265 332 + 198332218 taa---------------------cttctacattttaggtaatttt-------------------------------------------------------gaagattaagaaaaattaaatttctgtggcctag-ggtgtgtactcaataaaccacaattattgattgttattattattTTTGAGACCCCAAGGTAAAAAGAATATGCTTACTTTAACAGaagaaaacatggtttcaagtcctacaccttactggtta-ttcctca-tttccggtaggttaattaatcttcctgtgctctcatttctttatttgtcaagtggttatagtaGATGATTAATTAATGAGAGGATGGACTTAGGTTAAATACTTGAGGAGAGGACTCTAGTTAAAAGCACCAA---GAGTTTGTTT i ponAbe2.chr4 C 0 C 0 s rheMac3.chr5 16786056 336 + 184069350 TAA---------------------CTTCTACATTTTATGTAATTTT-------------------------------------------------------GAAGATTAAGAAAAATTAAATATCTGTGGCCTAG-GGTGAGTACTCAATAAACCACAATTATTGATTGTTATTATTACTTTTGAGACCCCATGgtaaaaagaatatgcttactttaactgaagaaaacatggattcaagtcctaaaccgtatttgtta-ttcttcattttcaggtaggttaattaatcttcttgtgctctcatttctttatttgtaaagtgggtatagtaCAGGATTAAATAATGAGAGGATGGACTTAGATTAAATACTTGAGGAGAGGATTCTAGTTAAAAGCACCAACAAGAGTTTGTTT i rheMac3.chr5 M 291 C 0 s macFas5.chr5 20836030 336 + 189454096 TAA---------------------CTTCTACATTTTATGTAATTTT-------------------------------------------------------GAAGATTAAGAAAAATTAAATATCTGTGGCCTAG-GGTGAGTACTCAATAAACCACAATTATTGATTGTTATTATTACTTTTGAGACCCCATGgtaaaaagaatatgcttactttaactgaagaaaacatggattcaagtcctaaaccgtatttgtta-ttcttcattttcaggtaggttaattaatcttcttgtgctctcatttctttatttgtaaagtgggtatagtaCAGGATTAAATAATGAGAGGATGGACTTAGATTAAATACTTGAGGAGAGGATTCTAGTTAAAAGCACCAACAAGAGTTTGTTT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16426002 336 + 178775436 TAA---------------------CTTctacattttatgtaatttt-------------------------------------------------------gaagattaagaaaaattaaatatctgtgGCCTAG-GGCGAGTACTCAATAAACCACAATTATtgattgttattattacttttgagaCCCCATGGTAAAAAGAACATGCTTACTTTAACTGAAGAAAACATGGATTCAAGTCCTAAACCGTATTTGTTA-TTCCTCATTTTCAGGTAGGTTAATTAATCTTCTTGTGctctcatttctttatttgtaaagtgGGTATAGTACAGGATTAAATAATGAGAGGATGGACTTAGATTAAATACTTGAGGAGAGGATTCTAGTTAAAAGCACCAACAAGAGTTTGTTT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19910027 336 - 48547382 TAA---------------------CTTCTACATTTTATGTAATCTT-------------------------------------------------------GAAGATTAAGAAAAATTGAATTTCTGTGGCCTAG-GGCGAGTACTCAATAAACCACAATCATTGATTGTTATTATTACTTTTGAGACCCCATGgtaaaaagaatatgcttactttaactgaagaaaacatggagtcaagtcctaaactgtatttgtta-ttcctcattttcaggtaggttaattaatcttcttgtgctctcatttctttatttgtaaagtgggtatagtaCAGGATTAAATAATGAGAGGATGGACTTTGATTAAATACTTGAGGAGAGGATTCTAGTTAAAAGCACCAACAAGAGTTTGTTT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21268411 412 - 190850796 taagataCCCAACTGATAGAAGATCCTAGACATTTAAAATTATCTCCTTTCCTTGCCCTACCCTCTATCCTCCATCTGGCTCACTGCCCTTAATAGAAAAGAAAATTTGAGAAAAATTAAAATTCTGTGGCCTAG-GGTGAGCATTCAATAAACCACAATTATTTATTGTTATTATTATTGTTGTGACCCCATGgtagaaagaatatgcttacttcaacaaaagagaaaatggtttcaagtcctaaaccttacttgttagtttctcattttcaagtaggttaattaatcttcttgtgctctcatttcttcatttgtaaagtggtt-tagtagatgattaactaaggAAAGGATGAACTCAGATTAAATACTTGAGGAGAGGACTTTAGTTAAAAGCACCAACATACATTTGTTT i calJac3.chr3 I 35 C 0 s canFam3.chr3 3844413 327 - 91889043 taa---------------------ctgctacattttaggtccttctct-----------------------------------------------------gaggattaaggaaaatgaaaa--ctgtggcatagcagtaggtactcaataaatcacagtgattcattattGTTATCA---TTGAGTCTCCATg-cagaaagagtatggttcctatgacacaagaaagcttgatttcaaatcctaaa--ttacttgccagctccttgttttcagacaggttaattcatctccttaggctctggcttctttatttataaagtggtaagaatagatgatGGACTGATAAAAGGATGACATTAGATTAA----TTGATGAGAGTAATCTAGCTAAAAGCACCAA-GAGAGTTTGTCG i canFam3.chr3 C 0 C 0 e mm10.chr5 49249904 4427 + 151834684 I e nomLeu3.chr20 20320881 0 - 85365473 C a score=321603.000000 s hg38.chr4_KI270790v1_alt 145764 105 + 220246 CCCTTTTCGTTTGTTCCATGTGTAGCCTATATTTTAGCTATAGGTTAATCACCATTTGTTTACCATGTCTTTCCTTTCCTAACACTAAAAGTTTTCTCAGGCTAG s panTro4.chr4 21532117 105 + 193495092 CCCTTTTCGTTTGTTCCATGTGTAGCCTATATTTTAGCTATAGGTTAATCACCATTTGTTTACCATGTCTTTCCTTTCCTAACACTAAAAGTTTTCTCAGGCTAG i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21709597 105 + 198332218 CCCTTTTTGTTTGTTCCATGTGTAGCCTATATTTTAGCTATAGGTTAATTACCATTTGTTTACCATGTCTTTCCTTTCCTAACACTAAAAGTTTTCTCAGGCTAG i ponAbe2.chr4 C 0 C 0 s rheMac3.chr5 16786392 105 + 184069350 CCCTTTTCGTCTGTTCCATGTGTACCCTATATTTTAGCTATAGGATAATCACCATTTGTTTACCATGTCTTTCCTTTTCTAACACTAAAAGTTTTCTCAGGCTAG i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20836366 105 + 189454096 CCCTTTTCGTCTGTTCCATGTGTACCCTATATTTTAGCTATAGGATAATCACCATTTGTTTACCATGTCTTTCCTTTTCTAACACTAAAAGTTTTCTCAGGCTAG i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16426338 105 + 178775436 CCCTTTTCGTCTGTTCCATGTGTACCCTATATTTTAGCTATAGGATAATCACCATTTGTTTACCATGTCTTTCCTTTTCTAACACTAAAAGTTTTCTCAGGCTAG i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19910363 105 - 48547382 CCCTTTTCGTCTGTTCCATGTGTACCTTATATTTTAGCTATAGGATAATCACCATTTGTTTACCATGTCTTTCCTTTTCTAACACTAAAAGTTTTCTCAGGCCAG i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21268823 105 - 190850796 CCCTTTTCTTTTGTTCCATATGTATCCTATATTTTAGCTATAGGCTAATCACCATTTGTTTACCATGTCTTTCCTTTCCGAACACTAAAAGTTTTCTCAGGCTAG i calJac3.chr3 C 0 C 0 s mm10.chr5 49254331 98 + 151834684 CCCTTTCTATTTATTGTATTTGCATGCTATACCCTAGTTATGGGCCAGTCACCACTTGCTCAGTATGTCTATCATTTCC-------ATAGTTTTTCTTAAACTAA i mm10.chr5 I 4427 C 0 s canFam3.chr3 3844740 97 - 91889043 TCTTTCTCGTTCATTCTATATATACTCTATACTCTAACTTCAGGCTAATCACCATGTGTTTATTATATTTGTTATATC--------AATTTTTTTCTCAGGCTAA i canFam3.chr3 C 0 C 0 e nomLeu3.chr20 20320881 0 - 85365473 C a score=355138.000000 s hg38.chr4_KI270790v1_alt 145869 104 + 220246 TCCCTCAATCTACAATGTGCTCCTATA-TCCTATCTATCAATACTTTACC-------TA--AGGCACAGCTGAGATATTTCccttatttaaagtcttaggatttttcca--------------------------------------------------------cca---gg s panTro4.chr4 21532222 104 + 193495092 TCCCTCAATCTACAATGTACTCCTATA-TCCTATCTATCAATACTTTACC-------TA--AGGCACAGCTGAGATATTTCCCTTATTTAAAGTCTTAGGATTTTTCCA--------------------------------------------------------CCA---GG i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21709702 101 + 198332218 TCCCTCAATCT---ATGTGCTCCTATA-TCCTATCTATCAATACTTTACC-------TA--AGGCACAGCTGAGATATTTCccttatttaaagtcctaggatttttcca--------------------------------------------------------ccg---gg i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20320881 104 - 85365473 TCCCTCAATCTACAGTGTACTCCTATA-TCCTATCTATCAATACTTTACC-------TA--AGGCACAGCTGAGATATTTCccttatttaaagtcctaggatttttcca--------------------------------------------------------cca---gg i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16786497 104 + 184069350 TCCCTCAATCTATAATGTACTCCTATA-TCCTATCTATCAATATTTTACC-------TA--AGGTACAGCTGAGATATTTCCCTTATTTAAAGTCCTAGGATTTTTCCA--------------------------------------------------------CCA---GG i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20836471 104 + 189454096 TCCCTCAATCTATAATGTACTCCTATA-TCCTATCTATCAATATTTTACC-------TA--AGGTACAGCTGAGATATTTCCCTTATTTAAAGTCCTAGGATTTTTCCA--------------------------------------------------------CCA---GG i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16426443 104 + 178775436 TCCCTCAATCTATAATGTACTCCTATA-TCCTATCTATCAATATTTTACC-------TA--AGGCACAGCTGAGATATTTCCCTTATTTAAAGTCCTAGGATTTTTCCA--------------------------------------------------------CCA---GG i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19910468 104 - 48547382 TCCCTCAATCTATAATGTACTCCTATA-TCCTATCTATCAATACTTTACC-------TA--AGGCATAGCTGAGATATTTCCCTTATTTAAAGTCCTAGGATTTTTCCA--------------------------------------------------------CCA---GG i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21268928 104 - 190850796 TCCCTCCATCTAGAATGTACTCCTGTA-TCCTATCTATCAATACTTTACC-------TA--AGGCACAGCTGAGAtgattcccttatttaaagttctaagatttttcca--------------------------------------------------------cca---gg i calJac3.chr3 C 0 C 0 s mm10.chr5 49254429 101 + 151834684 TCCC-------AGAGTTTACTCTTTGA-TCCCATTTCTCAATATGCACCA-------TACCAAGTTCCACTTACAT-TTTCTTTTACTAAGAGTGATCAGACTGGTCCA--------------------------------------------------------TCACTTGG i mm10.chr5 C 0 C 0 s canFam3.chr3 3844837 163 - 91889043 TCCTTCAACTA-----GCACTCTTATAGttccatctgtcagtattttacccatcctata--aggctcagttcaaatgtttgcctcattaaaagttctaggatttttccaagaaatatccttcttgggcagcctgggtggcccagcagtttagcgctgccttcagtcca---gg i canFam3.chr3 C 0 I 154 a score=2411337.000000 s hg38.chr4_KI270790v1_alt 145973 698 + 220246 aaatatcttccctatcctgtgtaccctcttttatctttccaaatat---acttgtatatgtcctccttatttatatata---------cctcttgcttcccttacttagactataatacatgaaaggcagagatgggagcatcattcttc---atatctcc---taaatgacctttcccaatggcttgcagataagaaacattcaataaaCTTAGGTT-----AACTACACTATGATTTTTCTGTATACTTTGGTCTCTATTTTA-AACTCCTTGTCTCCC-TTCTAAAGTAATTTCTACATTTAGGGACATTTCACATCAAGCAGAATATATAACATAT-TTTT-ACTTTCCATTGATCTACCCACATATCTTTTCAAATCTTCCCTGAAGTTGTGCTATCATAGGTAGTCACAGATGACAGTTGGAAAAGACAAGAGTAAGTGCAGCTCAGGGGAATTTCAATAGTAGACTAACATGCCCTACTTCTGG----------CATCTGAGAAAAAA---ACAGC-AAGAAATGAGAAAGACAGCACTGTTAACTTGGACCTGGAGGTTAGAG-TGGGCTCATGAGATGT-GGGGTTCTCTGT----CCACTACTC---------TAAATTGTTAATGCTATCCT-----TAA--ACAGGTCCAAGAA---TCTATGCTTGAAAATTAGTTCCCTTTTCTAGTGGTGGTTGTAGTGATGACAGTGATAC--TTGTTATTTTCAtttat---------gtagcaatttcact----tatata s panTro4.chr4 21532326 688 + 193495092 AAATATCTTCCCTATCCTGTATACCCTCTTTTATCTTTCCAAATAT---ACTTGTATATGTCCTCCTTATTTATATATA---------CCTCTTGCTTCCCTTACTTAGACTATAATACATGAAAGGCAGAGATGGGAGCATCATTCTTC---AGATCTCC---TAAATGACCTTTCCCAATGGCTTGCAGATAAGAAACATTCAATAAACTTAGGTT-----AACTACACTATGATTTTTCTGTATACTTTGGTCTCTATTTTA-AACTCCTTGTCTCCC-TTCTAAAGTAATTTCTACATTTAGGGACATTTCACATCAAGCAGAATATATAACATAT-TTTT-ACTTTCCATTGATCTACCCACATATCTTTTCAAATCTTCCCTGAAGATGTGCTATCATAGGTAGTCACAGATGACAGCTGGAAAAGACAAGAGTAAGTGTAGCTCAGGGGAATTTCAATAGTGGACTAACATGCCCTACTTCTGG----------CATCTGAGAAAAAA---ACAGC-AAGAAATGAGAAAGACAGCACTGTTGACTTGGACCTGGAGGTTAGAG-TGGGCTCATGAGATGT-GGGGTTCTCTGT----CCACTACTC---------TAAATTGTTAATGCTATCCT-----TAA--ACAGGTCCAAGAA---TCTATGCTTGAAAATTAGTTCCCTTTTCTAGTGGTGGTTGTAGTGATGACAGCGATAC--TTGTTATTTTCATTTAT---------GTAGCAATTT-------------- i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21709803 698 + 198332218 aaatatcttccctatcctgtataccctcttttatctttccaaatat---acttgtatatgtcctccttatttatatata---------cctcttgcttcccttacttagactataatacatgaaaggcagagatgggagcatcattctcc---atatctcc---taaatgacctttcccaatgccttgcagataagaaacattcaataaac--aGGTT-----AACTACACTATGATTTTTCTGTATACTTTGGTCTCTATTTTA-AACTCCTTGTTTCCC-TTCTAAAGTAATTTCTACATTTAGGGACATTTCACATCAAGCAGAATATATAACATAT-TTTT-ACTTTCCATTGATCTACCCACACATCTTTTCAAATCTTCCCTGAAGATGTGCTATCATAGGTAGTCACAGATGACAGCTGGAAAAGACAAGAGTAAGTGTAGCTCAGGGGAATTTCAATAGTGGACTAACATGCCCTACTTCTGG----------CATCTGAGAAAAAAA-CACAGC-AAGAAATGAGAAAGACAGCACTGTTAACTTGGACCTGGAGGTTAGAG-TGGGCTCATCAGATGT-GGGGTTCTCTGT----CCACTACTC---------TAAATTGTTAATGCTATCCT-----TAA--ACAAGTCCAAGAA---TCTATGCTTGAAAGTTAGTTCCCTTTTCTAGTGGTGGTTGTAGTGATGACAGTGATAC--TTGTTATTTTCATTTAT---------GTGGCAATttcact----tatata i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20320985 699 - 85365473 aaatatcttccctatcctctatacccccttttatctttccaaagat---acttgtatatgttctccttatttatatata---------cctcttgcttcccttacttagactataatacatgaaaggcagagaTGGGAGCATCATTCTCC---ATATCTCC---TAAATGACCTTTCCCAATGCCGTATAGATGAGAAACATTCAATAAACTCAGGTT-----AACCACACTATGATGTTTCTGTATACTTTGGTCTCTATTTTA-AACTCCTTGTTTCCC-TTCTAAAGTCATTTCTACATTTAGGGACATTTCACATCAAGCAGAATATATAACATAT-TTTT-ACTTTCCATTAATCTACCCACATATCTTTTCAAATCTTCCCTGAAGATGTGCTATCATAGGTAGTCACAGATGACAGCTGGAAAAGACAAGAGTAAGTGTAGCTCAGGGGAATTTCAATAGTGGACTAACATGCCCTACTTTTGG----------CATCTGAGAAAAAA--CACAGC-AAGAAATGAGAAAGACAGCACTGTTGACTTGGACCTGGAGGTTAGAG-TGGGCTCATGAGATGT-GGGGTTCTCTGC----CCACGACTC---------GAAATTGTTAATGCTATCCT-----TAA--ACAGATCCAAGAA---TCTATGCTTGAAAGTTAGTTCCCTTTTCTAGTGGTGGTTGTAGTGATGACAGTGATAC--TTGTTATTTTCAtttat---------gtggcaatttcact----tacata i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16786601 698 + 184069350 AAATATCTTCTCTATCCTGTATACCCTCTTTTATCTTTCCAAATA---------TATATGTCCTCCTTATTTATATATA---------CCTCTTGCTTCCCTTACTTAGACTATAATACATGAAAGGCAGAGATGGGACCATCATTCTCC---ATATCTCC---TAAATGAAATTTCCCAATGCCTTGCAGATAAGAAACATTCAATAAACTTAGGTT-----AACTACACTATGATTTCTCTGTATACTTTGGTCTCTATTTTA-AACTCCTTGTTTCCC-TTCTAAAGTAATTTTTACATTTAGGGACATTTCACATCAAACAGAATATATAACATAT-TTTT-ACTTTCCATTGATCTACCCACATATCTTTTCAAATCTTCCCTGAAGATGTGCTATCATGGGTAGTCACAGATGACAGCTGGAAAAGACAAGAGTAAGTGTAGCTCAGCGGAATTTCAATAGTGGACTAACTTGTCCTACTTCTGG----------CATCTGAGGAAAGAA-CACAGC-AAGAAATGAGAAAGACAGCACTGTTGACTTGGACCTGGAGGTTAGAG-TGGGCTCATGAGATGT-GGAGTTCTCTGT----CCACTACTC---------TAAATTGTTAATGCTACCCT-----TAA--ACAGGTCCAAGAA---TGTATGCTTGAAAGTTAGTTCCCTTTTCTAGTGGTGGTTGTAGTGATGACAATGATAC--TTGTTATtttcatttat---------gtggcaatttcacttatatatata i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20836575 696 + 189454096 AAATATCTTCTCTATCCTGTATACCCTCTTTTATCTTTCCAAATA---------TATATGTCCTCCTTATTTATATATA---------CCTCTTGCTTCCCTTACTTAGACTATAATACATGAAAGGCAGAGATGGGAGCATCATTCTCC---ATATCTCC---TAAATGAAATTTCCCAATGCCTTGCAGATAAGAAACATTCAATAAACTTAGGTT-----AACTACACTATGATTTCTCTGTATACTTTGGTCTCTATTTTA-AACTCCTTGTTTCCC-TTCTAAAGTAATTTTTACATTTAGGGACATTTCACATCAAACAGAATATATAACATAT-TTTT-ACTTTCCATTGATCTACCCACATATCTTTTCAAATCTTCCCTGAAGATGTGCTATCATGGGTAGTCACAGATGACAGCTGGAAAAGACAAGAGTAAGTGTAGCTCAGCGGAATTTCAATAGTGGACTAACATGTCCTACTTCTGG----------CATCTGAGAAAAGAA-CACAGC-AAGAAATGAGAAAGACAGCACTGTTGACTTGGACCTGGAGGTTAGAG-TGGGCTCATGAGATGT-GGAGTTCTCTGT----CCACTACTC---------TAAATTGTTAATGCTACCCT-----TAA--ACAGGTCCAAGAA---TGTATGCTTGAAAGTTAGTTCCCTTTTCTAGTGGTGGTTGTAGTGATGACAATGATAC--TTGTTATTTTCAtttat---------gtggcaatttcact--tatatata i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16426547 694 + 178775436 AAATATCTTCTCTATCCTGTATACCCTCTTTTATCTTTCCAAATA---------TATATGTCCTCCTTATTTATATATA---------CCTCTTGCTTCCCTTACTTGGACTATAATACATGAAAGGCAGAGATGGGAGCATCATTCTCC---ATATCTCC---TAAATGAAATTTCCCAATGCCTTGCAGATAAGAAACATTCAATAAACTTAGGTT-----AACTACACTATGATTTCTCTGTATACTTTGGTCTCTATTTTA-AACTCCTTGTTTCCC-TTCTaaagtaatttttacatttagaGACATTTCACATCAAAcagaatatataacatat-tttt-actttCCATTGATCTACCCACATATCTTTTCAAATCTTCCCTGAAGATGTGCTATCATGGGTAGTCACAGATGACAGCTGGAAAAGACAAGAGTAAGTGTAGCTCAGCGGAATTTCAATAGTGGACTAACGTGTCCTACTTCTGG----------CATCTGAGAAAAGAA-CACAGC-AAGAAATGAGAAAGACAGCACTGTTGACTTGGACCTGGAGGTTAGAG-TGGGCTCATGAGATGC-GGAGTTCTCTGT----CCACTATTC---------TAAATTGTTAATGCTATCCT-----TAA--ACAGGTCCAAGAA---TGTATGCTTGAAAGTTAGTTCCCTTTTCTAGTGGTGGTTGTAGTGATGACAATGatac--ttgttattttcatttat---------gtggcaatttcact----tatata i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19910572 694 - 48547382 AAATATCTTCTCTATCCTGTATACCCTCTTTTATCTTTCCAAATA---------TATATGTCCTCCTTATTTATATATA---------CCTCTTGCTTCCCTTACTTAGACTATAATACATGAAAGGCAGAGATGGGAGCATCATTCTCC---ATATCTCC---TAAATGAAATTTCCCAATGCCTTGCAGATAAGAAACATTCAATAAACTTAGGTT-----AACTACACTATGATTTTTCTGTATACTTTGGTCTCTATTTTA-AACTCCTTGTTTCCC-TTCTAAAGTAATTTTTACATTTAGGGACATTTCACATCAAACAGAATATATAACATAT-TTTT-ACTTTCCATTGATCTACCCACATATCTTTTCAAATCTTCCCTGAAGATGTGCTATCATGGGTAGTCACAGATGACAGCTGGAAAAGACAAGAGTAAGTGTAGCTCAGCAGAATTTCAATAGTGGACTAACGTGTCCTACTTCTGG----------CATCTGAGAAAAAAA-CACAGC-AAGAAATGAGAAAGACAGCACTGTTGACTTGGACCTGGAGGTTACAG-TGGGCTCATGAGATGT-GGAGTTCTCTGT----CCACTACTC---------TAAATTGTTAATGCTATCCT-----TAA--ACAGGTCCAAGAA---AGTATGCTTGAAAGTTAGTTCCCTTTTCTAGTGGTGGTTGTAGTGATGACAATGATAC--TCGTTATTTTCAtttat---------gtggcaatttcact----tatata i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21269032 697 - 190850796 aaatttctttcctatcctgtataccctcttgtatgtttccaaatat---tattgtatatgtcctccgtatttatatata---------actcttgcttcccttatttagactataatacatgaaaggcaaagatggaagcatcattccccatgatatctcc---taaacga-ttatccaagtgccttgcagataagaaacattcagtaaaC-----TT-----AACGATACTACAATTTTTCTCCATACTTAGGTCTCTATTTTA-AACTCCTTCCTTCCC-TTCTAAAGTAATGTCTACATTTAGGGACATTTCACATCAAGTAGAGTACATAACATAT-TTTTAACTTTCTATTGATCTACCCACATATCTTTTCAAATCTTCCCTGAAGATGTGGTATCATGGGTAGTCACAGATGACAGCTGGAAAAGACAAGAGTAAGTGTATCTCAGGGGAGTATCTATAGTGGGGTAACATGCCCTACTTCTGG----------CTTCTGAGAAAGAA--CACAGC-AAGGAATGAGAAAGACAGCACTGTTGAATTGGACCTGGAGGTTATAG-ATGGCTCCTGAGATGTGGGGGTTCTCTGT----CTACTACTC---------TAAATTATTAATGGTATCCC-----TAA--ACAGGTCCAAGAA---TCTATGCTTGAAACTTAATTCCATTTTCTAGTGGCGGTTGTC-tgataataatgatac--ttgttattttcatttat---------gtggcagtttcact----tacatg i calJac3.chr3 C 0 C 0 s mm10.chr5 49254530 694 + 151834684 G----TCCTTGGCGTTCTATGTATCCTCTTATGTTTTACCAA------------TATAG----TACTTAAACATATAAAAAAGAAGATATACTTTCTTCCTTTCTTC------TATTACTAGAAAAAGTAGGATTGTTGTGCCATTTTCT---TTCCCTCCTCTTCAATGATCTAGCTCAGTTCCTGGCACATAAGAAACATTGCATTAACTTCATCC-----TATTATATTATAATTGTTCTGTACAAGGTGTACTCTACTTTATATCTCCTTATGTCAC-ATCTCAATTAATTTCCATATTTAGGAACA-TCCACATCAAGTGTACTATATAAACTGTGTTTT-ATTTTCCATTGGTTGATCCACACATTTTTAAAAATATTCATGGAAGAGAAGGTATCATCGG-----------AACAGC---AGAAGACAAGACTAAGCATAGCCCTTGGAAATTGCAG-AAAGGTCTGGTGTACTCTCCTTCTGA----------TATCTAGCAAAAGGC-ATCAACAAAGAAGTGATAAACGTAACCATATCTAGTAGGACATGAAAGCCAGTGTTTGGCTCTT--GATTT-TGAATTCTTCCT----CCACTACTCATACTTTTTTAGATATTTTTTTCTAAACTGAAGGTAA--ATGGGT-----AG---TCTAGTTTGGAAACATAATTCTGTTTTCCAATGGTGGCTGTGTAGCTGA-AACCATACTATCATTATTGTAATTTTTCTCAATCTCATAGCAATCTCAAT----TTAATA i mm10.chr5 C 0 C 0 s canFam3.chr3 3845154 703 - 91889043 aactatccttcttatcctttatatcc-ctcatattataccaaagatgacattgttatatattctccttgttttcatata---------cct----cttcccttatgtacactgtaagctgtaagaggcagagagagatacattattcccctacatgcctct---taaattggttaccccagtgccgcgcacacaagaaaaattcaataaaccttggttaaatgaaCTTCACTAAGATTTGTCTATACTTTCTGGACTCTATAATA-AACCCCTTACTTCCCACTTTAAGGTCATTTCTGCGTTTAGGACCATTTTACATCAAGTAGAACATATGACATA--TCTA-GCTTTCTATTGACCTACCCATACATCTTTTCAAATTTGCCCTGAAGATGTGGGATCATGGGTCGTCGCAGAGGATGGCCAG---CGATCAGAGTAAGCATGGCTCGGGGGAATTTTATGAGTGGACTAGCATACTCCATTCCTGGACAAACAAAACATACAAACAAACAATCACAGT-A--GAACTAAAAAGACACCAATGTCATTTTGGACATGGAGGTCAGAG-TTGGCGCATAGGAGAT-GGGGTTCTTCGTCCACCCACCACTC---------TGACTTGTTAAAGCTGTCCC-----TAATCAGAGGTCTAAAGAAGGTCGATTCTTGAAACTTAGCTGCATTTCCCACTCCTGGTTGCAGTGATGA------AAC---------TCTCATTTCT---------ATACCATTGTCACT----T----- i canFam3.chr3 I 154 C 0 a score=27286.000000 s hg38.chr4_KI270790v1_alt 146671 10 + 220246 tatctcattt s ponAbe2.chr4 21710501 10 + 198332218 tatctcattt i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20321684 10 - 85365473 tatctcattt i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16787299 10 + 184069350 tatatcattt i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20837271 10 + 189454096 tatctcattt i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16427241 10 + 178775436 tatctcattt i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19911266 10 - 48547382 tttctcattt i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21269729 10 - 190850796 tatctcattt i calJac3.chr3 C 0 C 0 s canFam3.chr3 3845857 8 - 91889043 --TCCCATTT i canFam3.chr3 C 0 I 16 e mm10.chr5 49255224 0 + 151834684 C e panTro4.chr4 21533014 0 + 193495092 C a score=2104784.000000 s hg38.chr4_KI270790v1_alt 146681 712 + 220246 tgacatggacaggaggcagggaaatactggttagaaaagggaggttccctagaaaaggccccaccctcaagcctggaaacttgcagccctaaatgagaataagcattcctgttttcgtgcccaaatgttgccttttccaagaccactctggcctgccatgcccctattctgtgcccatataaaccccaagctccataggcagagcagcagagcagtgtagcagagaaggaaagaagagaggaagtgtctgaacacatcaagagaagttcttctggg-acgacaggcaaggacatcagccacgggacggctgaactcaggggaacatcatctgtccactccatctcctttccagctccccatcccatttagagccacctccttcactcaataaaatccccacattcaccattcttcaagtttgtgtgacctgattcttcctggacactggacaagaatttgggaggcagtgggtacgggaacccaaaaaggctgtcacactgactcttcactgagccgcttaacacttaagccattcttggatagctgggctaaaagagcactgtagcactcctggacactgccatgggtct-ggagcccaaaagtgctcactctggctcctgcacctgctcacttgtgtgctcccactcccataaggggtttgagcatgccacatccacgtcacaagtcccacaagggggtcagggaactctcc s panTro4.chr4 21533014 711 + 193495092 tgacatggacaggaggcagggaaatactggttagaaaagggaggttccctggaaaaggccccaccctcaagcctggaaacttgcagccctaaatgagaataagcattcctgttttcgtgcccaaatgttgccttttccaagaccactctggcctgccatgcccctattctgtgcccatataaaccccaagctccataggcagagcagcacagcagtgtagcagagaaggaaagaagagaggaagtgtctgaacacatcaagagaagttattctggggacgacaggcgaggacatcagccataggatggctgaactcaggggaatatcatcttcccactccatctcctttccagctccccatcccatttagagccacctccttcactcaataaaatccccacattcaccattcttcaagtttgtgtgacctgattcttcctggacactggacaagaatttgggaggcagtgggtatgggaacccaaaaaggctgtcacactgactcttcactgagccgtttaacac--aagccattcttggatagctgggctaaaagagcactgtagcactcctggacactgccatgggtct-ggagcccaaaagtgcccactctggctcctgcacctgctcacttgtgtgctccccctcccataaggggtttgagcatgccacatccacgtcacaagtcccacaagggggtcagggaactctcc i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21710511 710 + 198332218 tgacatggagaggaggcagggaaatactcgttagaaaagggaggttccctggcaaaggccccaccctcaagcctggaaacttgcagccctaaatgagaacaagcattcctgtttttgtgcccaaatgttgccttttccgagaccactctggcctgccatgcgcctattctgtgcccatataaaccccaagctccattggcagagcagcagagcactgtagcagagaaggaaagaagagaggaagtgtctgaacacatcaagagaag---ttctggggacgacaggcgaggacatcagccacgggacagctgaactcaggggaacgtcatcttcccactccatctcctctccatctccccatctcgtttagagccacctccttcattcaataaaatccccacattcaccatccttcaagtttgtgtgacctgattcttcctggacactggacaagaatttgggaggcagtgggtatgggaacccaaaaaggctgtcacactgactcttcactgagctgtttaacacttgagccattcttggatagctgggctaaaagagcactgtagcactcctggacactgccatgggtct-ggagcccaaaagtgctcactctggctcctgcacctgctcacttgtgtgctccccctcccataaggggtttgagcatgccacattcacgtcacaagtcccacaagggggtcagggaactctcc i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20321694 713 - 85365473 tgacatggacaggaggcaaggaaatactggttagaaaagggacgttccctggcaaaggccccaccctcaagcctggaaacttgcagtcccaaatgagaacaagcattcctgttttcatgcccaaatgttgccttttccaagaccactcttgcctgccatgcccctattctgtgcccatataaaccccaagccccagtggcagagcagcagagcagtgtggcagaaaaggaaagaagaggggaagtgtctgaacacatcaagagaagttcttctggggatgacaggtgaggacatcagctatgggatggctgaactcaggggaacatcatcttcccactccatctcctctccagctccccatcccatttagagccacctccttcactcaataaaatccccacgttcaccatccttcaagtttgtgtgacctgattcttcctggacactggacaagaatttgggaggcagtgggtatgggatcccaaaaaggctgtcacactgactcttcactgagctgtttaacacttaagccactcttggatagctgggctaaaagagcactgtagcactcctggacactgccatgggtct-ggagcccaaaagtgctcactctggctcctgcatctgctcacttgtatgctccccctcccatagggggtttgagcatgccgcatccatgtcacaagtcccacaagggggtcagggaactctcc i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16787309 706 + 184069350 tgagatggacaggaggcagggaaatactgggtaaaaaagggaggttccctggcaaaggccccacccttaagcctggaaacttgcagccctaaatcagaacaagcattactgttttcatgcccaaatgttgccttttccaagaccactctggcctgccatacccctattctgtgcccatataaaccccaagctccattggcagagcagcagagcagtgtggcagagaaggaaagaagagaggaagtgtctgaacacatcaagagaagttcttctggggacgataggcgaggacatcaaccacgggacggctgaactcaggggaacatcatcttcccactccatctcctctccagctccctatcctgtttagagccacctccttcactcaataaaatccccgcattcaccatccttcaagtttgtgtgacctgattcttcctggacactggacaagaacttgggaggcagtgagtacgggaacccagaaaggctgtcacactgactcttcactgagctgtttaacacttaagccattcttggatatcagggctaaaagagcattgtagcactcctggacat-------ggtct-ggagcccaaaagtgctcactctggcttgtgcacctgctcacctgtgtgctccccctcccataaggggtttgagcatgccacatccatgtcacaagtcccacaagggggtcagggaagtctcc i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20837281 706 + 189454096 tgagatggacaggaggcagggaaatactgggtagaaaagggaggttccctggcaaaggccccacccttaagcctggaaacttgcagccctaaatcagaacaagcattactgttttcatgcccaaatgttgccttttccaagaccactctggcctgccatacccctattctgtgcccatataaaccccaagctccattggcagagcagcagagcagtgtggcagagaaggaaagaagagaggaagtgtctgaacacatcaagagaagttcttctggggacgataggcgaggacatcaaccacgggacggctgaactcaggggaacatcatcttcccactccatctcctctccagctccctatcctgtttagagccacctccttcactcaataaaatccccgcattcaccatccttcaagtttgtgtgacctgattcttcctggacactggacaagaacttgggaggcagtgagtacaggaacccagaaaggctgtcacactgactcttcactgagctgtttaacacttaagccattcttggatatcagggctaaaagagcattgtagcactcctggacat-------ggtct-ggagcccaaaagtgctcactctggcttgtgcacctgctcacctgtgtgctccccctcccataaggggtttgagcatgccacatccatgtcacaagtcccacaagggggtcagggaagtctcc i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16427251 706 + 178775436 tgagatggacaggaggcagggaaatactgggtagaaaagggaggttccctggcaaaggccccacccttaAGCCTGGAAACTTGCAGCCCTAAATCAGAACAAGCATTACTGTTTTcgtgcccaaatgttgccttttccaagaccactctggcctgcCATACCCCTATTCTgtgcccatataaaccccaaGCTCCACTGGCAGAGCAGCAGAGCAGTgtggcagagaaggaaagaagagaggaagtgtCTGAACACATCAAGAGAAGTTCTTCTGGGGACGATAGGCGAGGACATCAACCACGGGACGGCTGAACTCAGGGGAacatcatcttcccactccatctcctctccagctccccatccTGTTTAGAGCCACCTCCTTCACTCAATAAAATCCCCgcatttaccatccttcaagtttgtgtgacctgattcttcctggacactggACAAGAACTTGGCAGGCAGTGAGTACGGGAACCcagaaaggctgtcacactgactcttcactgagctgtttaacacttaagccattCTTGGATATCAGGGCTAAAAGAGCATTGTAGCACTCCTGGACAT-------GATCT-GGAGCCCAAAAGTGCTCACTCTGGCTTGTGCACCTGCTCACCTGTGTGCTCCCCCTCCCATAAGGGGTTTGAGCACGCCACAGCCATGTCACAAGTCCCACAAGGGGGTCAGGGAAGTCTCC i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19911276 695 - 48547382 tgagatggacaggaggcagggaaatactgggtagaaaagggaggttccctggcaaaggcctcac-------cctggaaacttgcagccctaaatcagaacaag-----ctgttttcgtgcccaaatgttgccttttccaagaccactctggcctgccatacccctattctgtgcccatataaaccccaagctccattggcagagcagcagagcagtgtggcagagaaggaaagaagagaggaagtgtttgaacacatcaagagaagttcttccggggacgataggcgaggacatcaaccacgggacggctgaactcaggggaacatcatcttcccactccatctcctctccagctccccatcctgtttagagccacctctttcactcaataaaatccccgcattcaccatccttcaagtttgtgtgacctgattcttcctggacactggacaagaacttgggaggcagtgagtacgggaacccagaaaggctgtcacactgactcttcactgagctgtttaacacttaagccattcttggatatcagggctaaaagagcattgtagcactcctggacat-------ggtctgggagcccaaaagtgctcactctggcttgtgcacctgctcacctgtgtgctccccctcccataaggggtttgagcatgccacatccatgtcacaagtcccacaagggggtcagggaagtctcc i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21269739 674 - 190850796 tgacatggacagcaggcagggaaatactgggtagaaaaggga-gttccccagcaaagg--------------ctggaaacttgaagctctaaatgagaacaggcattcctgttttcatgcccaaatgttgccttttccaagaccactctggcctgccatgcccctatcctgtgcccgtataaaccccaagctccactggcagagcag--------tgtggcaaagaagaaaagaagagaggaagtgtctga--acatcaagag-agttctgctggagacagtaggagaggacatcaggcacgggacagctgagct-aggggaagatcatcttcccactctatctcctctccagctccccatcttgtttagagccaatttcatcactcagtaaaatccctgcattcaccatccttcaactttgtgtgacctgattcttcctggacactggacaagaattcaggagccagtgtatgtgggaacctaaaaaggctgtcacactgactcttcactgatctgtttaacacttatgccattcttggatagcagggctaaaagagcattgtagcacccctagacactaccat-gggct-ggagtcccaaaatgctcactctggctccttcacttgttcacctgtgtgcttcccctcccataaggggtttgaacat-----------gtcacaagtctcacaagggggtcagggaactctcc i calJac3.chr3 C 0 C 0 e mm10.chr5 49255224 0 + 151834684 C e canFam3.chr3 3845865 16 - 91889043 I a score=155478.000000 s hg38.chr4_KI270790v1_alt 147393 50 + 220246 catttcaatttgaatagcaatccagttctcagaggtagttgttattacat s panTro4.chr4 21533725 50 + 193495092 catttcaATTTGAATAGCAATCcagttctcagaggtagttgttattacat i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21711221 50 + 198332218 catttcaatttgaatagcaatcccattctctgaggtagttgttattacat i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20322407 50 - 85365473 cacttcaatttgaatagcaatccagttctctgaggtagtggttattacat i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16788015 50 + 184069350 catttcaatttgaataggaatccaactctctgaggtagttgtcattaaat i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20837987 50 + 189454096 catttcaatttgaataggaatccaactctctgaggtagttgtcattaaat i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16427957 50 + 178775436 CATTTCAATTTGAATAGGAATCCAACTCTCTCAGGTAGTTGTCATTAAAT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19911971 50 - 48547382 catttcaatttgaataggaatccagctctctgaggcagttgtcattaaat i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21270413 50 - 190850796 catttcaatttgaatagaaatccaattctctgagggagttgttgttaaat i calJac3.chr3 C 0 C 0 s mm10.chr5 49255224 49 + 151834684 CATCTC-ATTTGACTAACAGCCCTACCCCTGGAGATTGTTGTCATTAGAT i mm10.chr5 C 0 C 0 e canFam3.chr3 3845865 16 - 91889043 I a score=1599812.000000 s hg38.chr4_KI270790v1_alt 147443 498 + 220246 ctatcttacctatgagaacactgtggctcagagtgatgagccaaattgg-ccagagtgacTAAGACACTCATCCGATAGAAGATTCT---------------------AGACAAAATCTCTTCTCCTGCCC---CCACCCTCCACCCTCCATCTAGTTCACTGCCCTCGATAGGTTCTTTTATCCCTTCACTTTTTAACTGGCATCTCTGAAATGCTGAGGGGCAAAAAATGAAAGAAA---------------------------AGATAAAATA-------------------CTAGTGCCAAAGGCAAAGAAGAAAATACCA------AACAATTTTAGTGTAA-AAGTAACTAAACGTCCTTATTTCTATT-------AAAAAATTAGCTTAGATCGGAACTATATAA-GGCAGTTTTCTCGCTGTAAGAGAAAATTTTCAGTTGC-TG--TAAAGGGTGACACAATGCGACCCAAGTGATCTGTAGACATTTTAAAAACAGGGCTGAGTCCAAAGTGCCTTTTCAGAAAGGTGTTAGGGCTTCCTCACACCACCTGGA-CAAAGGGGTATTTGCTTGTAAGCA s panTro4.chr4 21533775 498 + 193495092 ctatcttacctgtgagaacactatggctcagagtgatgagccaaattgg-ccagagtgacTAAGACACTCATCCGATAGAAGATTCT---------------------AGACAAAATCTCTTCTCCTGCCC---CCACCCTCCACCCTCCATCTAGTTCACTGCCCTCGATAGGTTCTTTTATTCCTTCATTTTTTAACTGGCATCTCTGAAATGCTGAGAGGCAAAAAATGAAAGAAA---------------------------AGATAAAATA-------------------CTAGTGCCAAAGGCAAAGAAGAAAATACCA------AACAATTTTAGTGTAA-AAGTAACAAAACGTCCTTATTTCTATT-------AAAAAATTAGCTTAGATCGGAACTATATAA-GGCAGTTTTCTTGCTGTAAGAGAAAATTTTCAGTTGC-TG--TAAAGGGTGACACGATGCGACCCAAGTGATCTGTAGACATTTTAAAAACAGGGCTGAGTCCAAAGTTTCTTTTCAGAAAGGTGTTAGGGCTTCCTCACACCACCTGGA-CAAAGGGGTATTTGCTTGTAAGCA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21711271 498 + 198332218 ctaccttacctatgagaacactatggctcagagtgatgagccaaattgg-ccagagtgacTAAGACACTCACCTGATAGAAGATTCT---------------------AGACAAAATATCTTCTCCTGCCC---CCACCCTCCACCCTCCGTCTAGTTCACTGCCCTCGATAGGTTATTTTATTCCTTCATTTTTTAACTGGCATCTCTGAAATGCTGAGAGGCAAATAATGAAAGAAA---------------------------AGATAAAATA-------------------CTAGTGCCAAAGGCAAAGAAGAAAATACCA------AACAATTTTAGTGTAA-AAGTAACTAAATGTCCTTATTTCTATT------AAAAAAAATAGCTTAGGTCAGAACTATATAAGGGCAGTTTTCTCG-TGTAAGAGAAAATTTTCAGTTGC-TG--TAAAGGGTGACACAA-GCAACCCAAGTGATCTGTAGACATTTTAAAAACAGGGCTGAGTCCAAAGTTTCTTTTCAGAAAGTTGTTAGGGCTTCCTCACACCACCTGGA-CAAAGGGATATTTGCTTGTAAGCA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20322457 497 - 85365473 ctatcttacctatgagaacactatggctcagagtgatgagccaaattgg-ccagagtgactaagacactcacctgatagaagattct---------------------agacaaaatctcttctcttgccc---ccacccttccccctccatctagttcactgcccTCGATAGGTTCTTTTATTCCTTCATTTTTTAACTGGCATCTCTGAAATGCTGAGAGGCAAATAATGAAAGAAA---------------------------AGATAAAATA-------------------CTAGTGCCAAAGGCAAAGAAGAAAATACCA------AACAATTTTAGTGTAA-AAGTAACTAAATGTCCTTATTTCTATT-------AAAAAAATAGCTTAGGTCAGAACTACATAAGGGCGGTTTTCTCA-TGTAAGAGAAAATTTTCAGTTGC-TG--TAAAGGGTGACACAA-GCAACCCAAGTGATCTGTAGACATTTTAAAAACAGGGCTGAGTCCAAAGTTTCTTTTCAGAAAGTTGTTAGGGCTTCCTCACACCACCTGGA-CAAAGGGATATTTCCTTGTAAGCA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16788065 506 + 184069350 ctatcttacctatgagaacactatggctcagagtgatgagccaaattggcccagagttacCAAGACACTCACCTGATAGAAAATTTT---------------------ACATAAAATCTCTTCTCCTGGCCCCACCACCCTCCACCCTCTCTCTAGTTTGCTGCCCTCAATAGGTTCTTTTATTCCTTTATTTTTTAACTGGCATCTCTAAATTGCTGCAAGGCAAATAATGAAAGAAA---------------------------AGATAAAATA-------------------CTAGTGCCAAAGGCAAAGAAGAAAATACCA------AACAATTTTAGTGTAA-AAGTAACTAACTGTCCTTGTTTCTATT----AAAAAAAAAATAGCTTAGGTCTGAACTATATAAAGGCAGCTTTCTCGCTGTGAGAGAAAATTTTCAGTTGC-TG--TAAAGGGTGATACAATGCAACCCAAGTGATCTGAAGACATTTTTGAAACAGGGCTGAGTCCAAAGTTTCTTTTCAGAAAGGTGTTAAGGCTTCCTCACACCACCTGGA-CAAAATGATATTTGCTTGTAAGCA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20838037 507 + 189454096 ctatcttacctatgagaacgctatggctcagagtgatgagccaaattggcccagagttacCAAGACACTCACCTGATAGAAAATTTT---------------------ACATAAAATCTCTTCTCCTGGCCCCACCACCCTCCACCCTCTGTCTAGTTTGCTGCCCTCAATAGGTTCTTTTATTCCTTCATTTTTTAACTGGCATCTCTAAATTGCTGCAAGGCAAATAATGAAAGAAA---------------------------AGATAAAATA-------------------CTAGTGCCAAAGGCAAAGAAGAAAATACCA------AACAATTTTAGTGTAA-AAGTAACTAACTGTCCTTGTTTCTATT---AAAAAAAAAAATAGCTTAGGTCTGAACTATATAAAGGCAGCTTTCTCGCTGTGAGAGAAAATTTTCAGTTGC-TG--TAAAGGGTGATACAATGCAACCCAAGTGATCTGAAGACATTTTTGAAACAGGGCTGAGTCCAAAGTTTCTTTTCAGAAAGGTGTTAAGGCTTCCTCACACCACCTGGA-CAAAATGATATTTGCTTGTAAGCA i macFas5.chr5 C 0 I 116 s papAnu2.chr5 16428007 507 + 178775436 CTATCTTACCTATGAGAACGCTATGGCTCAGAGTGATGAGCCAAATTGGCCCAGAGTTACCAAGACACTCACCTGAtagaaaatttt---------------------acataaaatctcTTCTCCTGGCCccaccaccctccaccctctgtcTAGTTTGCTGCCCTCAATAGgttcttttattccttcattttttaaCTGGCATCTCTAAATTGCTGCGAGgcaaataatgaaagaaa---------------------------agataaaata-------------------ctagtgccaaaggcaaagaagaaaataccA------AACAATTTTAGTGTAA-AAGTAACTAACTGTCCttgtttctgtt---aaaaaaaaaaatagcttaagTCTGAACTATATAAAGGCAGCTTTCTCGCTGTGAGAGAAAATTTTCAGTTGC-TG--TAAAGGGTGATACAATGCAACCCAAGTGATCTGTAGACATTTTTGAAACAGGGCTGAGTCCAAAGTTTCTTTTCAGAAAGGTGTTAGGGCTTCCTCACACCACCTGGA-CAAAATGATATTTGCTTGTAAGCA i papAnu2.chr5 C 0 I 58 s chlSab2.chr27 19912021 503 - 48547382 ctatcttacctatgagaacgctatggctcagagtgatgagccaaattgacccagagttacCAAGACACTCACCTGATAGAAAATTTT---------------------AGATAAAATCTCTTCTCCTGGCC---CCACCCTCTACCTTTTGTCTAGTTTGCTGCCCTCAATAGGTTCTTTTATTCCTTCATTTTTTAACTGGCATCTCTAAATTGCTGCGAGGCAAATAATGAAAGAAA---------------------------AGATAAAATA-------------------CTAGTGCCAAAGGCAAAGAAGAAAATACCA------AACAATTTTAGTGTAA-AAGTAACTAAATGTCCTTGTTTCTATT----TAAAAAAAAATAGCTTAGGTCTGAACTATATAAAGGCAGCTTTCTCGCTGTGAGAGAAAATTTTCAGTTGC-TG--TAAAGGGTGATACAATGCAACCCAAGTGATCTGTAGACATTTTTGAAACAGGGCTGAGTCCAAAGTTTCTTTTCAGAAAGGTGTTAGGGCTTCCTCACACCACCTGGA-CAAAATGATATTTGCTTGTAAGCA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21270463 483 - 190850796 ctatcttacctatgagaacactatggctcagattgatgtgcaaacttggctcagagtGATTAAGACACCAACCTGATAGAA-ATTCT---------------------ATACAAAA-CACTTCTCCTGGCC---CCACCCTCCACCCTCCATCTACTTCGCTGCCCTCAATAGGTTCTTTTATTTCTTAATTTTCTAACTGGCATCTCTGAAATGCTGAGAGTCAAATAATGAAAGAAA---------------------------AGATAAAATA-------------------CTAGTACCAAAGGCAAAGAAGAAAATACCG------AACAATTTTAGTGTAA-AAGTAACTAAATGTCCTTATTTCta------aaaaataaaata---------------aaataaaGGCAGCTTTCTCACTGTGAGAG--AATTTTCGGTTGCTTA--TAAAGCATGACACATTGCAACCCAACTGCTCTATATACATTTCAATAACAGGACTGAGTCTAAAGTTTCTTTTCAGAAGGGTGTTAGGGCTTCCTCACATCACATGGA-CAAAGGGATATTTGCTTATAAGCA i calJac3.chr3 C 0 C 0 s mm10.chr5 49255273 487 + 151834684 GCATCTAAGTTGCACAGATAC-GTGGCTTACAG----------AACTAGCTCAGGCACGTTCACACACTTACATCATAGAAGGTGCcaaaacaaaacaaaacaaaacaaaacaaaa-caTTTCTCCTGAAT---CTTACACTCACCTTGTTTATA------CACAGAGGATGGAATTATTTTTTCATTGATTTCAGAAGTACCATCTATAAGAAGTTGAGAGATAAATAATGAAATAAA-------------------------------AATGTA-------------------TTTGTACCAGTAGCAAAAGGAAACTTACCATTGCACATCAGCTTGAGGGAGA-GA-----TGAAAGCCTTTAAGTCTCAA--GAAAAAGAAAAGGAGCTTTGGTCTAAAATGAATCAGGGCAACTATCTCAGTATG-GGGAGAGCTCTCAG--AC-TA--GACAA---GATTCAGGGCAGGCTGAGTGCTCTCT--GCATTTCAGGAAT-------AGTCCAAGGATCAG----AGAAAGCTATGATGACTTGCACGTCACACTTGGACCAAAGGAGTGTTCACCTGTGAACA i mm10.chr5 C 0 C 0 s canFam3.chr3 3845881 541 - 91889043 CTGCCTTTCCTATGAGGACCCTGTGACT----------AACCAAATTGACCCAAAGCTACTAATACACGTACAGGATAGAAGATTCC---------------------AGACCCAAACTCCTCTCCTGACT---CCAACATCCACCCTCCGTCTAGTATACCACACTCAAAAGACTCTCTTTATCCTTGATTTTTCCACTGATATCCCTGAAATATTGAGAAGCAAATGACaaaagaaaaaaataataaaataaaataaaaaaataaaataaaataGATATGCAATCATCTTTAGCTAGTGCCAA----AAAACAGGGAAAAATA------AACAATCTTGGTGTGATAAATGACCAAAAGCTTTTGTTTCTCAAGGGGGCGGGGAGAACACATTAGGTCTAAACCGAGTAAGGACAGCTGTCCAGCTACG-GGGAAAATGCTCAGTTCC-CGGTGAGGGGGGGACACAACCCAACCCAAGTAGTTTGCAGGCACTTCAAAAGGAGGGTTGAGGCCAAAGCTCCCCTTCAGAAATCTGTCAGGGCTTCCTCTCACCACCTGGA-CCAATGGATATTAGCTGGACCGCC i canFam3.chr3 I 16 C 0 a score=86640.000000 s hg38.chr4_KI270790v1_alt 147941 40 + 220246 ---ACCTCTACAAGGGTATTTCATACACCCTGTGTCCTCCA--CA- s panTro4.chr4 21534273 40 + 193495092 ---ACCTCTACAAGGGTATTTCATACACCCTATGTCCTCCA--CA- i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21711769 40 + 198332218 ---GCCTCTACAAGGGTATTTCATACACCCTGTGTCCTCCA--CA- i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20322954 40 - 85365473 ---ACCTCTACAAGGGTATTTCATACACCCTGTATCCTCCA--CA- i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16788571 38 + 184069350 ---ACCTCTACAAAGGTATTTCATCTACCCTGTGTCCTCCA----- i rheMac3.chr5 C 0 I 116 s macFas5.chr5 20838660 38 + 189454096 ---ACCTCTACAAAGGTATTTCATACACTCTGTGTCCTCAA----- i macFas5.chr5 I 116 C 0 s papAnu2.chr5 16428572 40 + 178775436 ---ACCTCTACAAGGGTATTTCATACACTCTGTGTCCTCCAAA--- i papAnu2.chr5 I 58 I 56 s chlSab2.chr27 19912524 38 - 48547382 ---ACCTCTACAAAGGTATTTCATATACCCTGTGTCCTCCA----- i chlSab2.chr27 C 0 I 116 s calJac3.chr3 21270946 38 - 190850796 ---AACTCTGCAAGGTTATTTCACACACCCTGTCTGCTCCA----- i calJac3.chr3 C 0 C 0 s mm10.chr5 49255760 31 + 151834684 ---GATCCTGTGGAGGAGCGTGATGTCCTCTTCA------------ i mm10.chr5 C 0 C 0 s canFam3.chr3 3846422 37 - 91889043 ACTGTTTCT-----GGTATTTTAAACAAACTGTCACCTTCA----T i canFam3.chr3 C 0 C 0 a score=45266.000000 s hg38.chr4_KI270790v1_alt 147981 11 + 220246 ATCTGAAGCTT s panTro4.chr4 21534313 11 + 193495092 ACCTGAAGCTT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21711809 11 + 198332218 ACCTGAAGCTT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20322994 11 - 85365473 ACCTGAAGCTT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16788725 11 + 184069350 ACCTGAAGCTT i rheMac3.chr5 I 116 C 0 s macFas5.chr5 20838698 11 + 189454096 ACCTGAAGCTT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16428668 11 + 178775436 ACCTGAAGCTT i papAnu2.chr5 I 56 C 0 s chlSab2.chr27 19912678 11 - 48547382 ACCTGAAGCTT i chlSab2.chr27 I 116 C 0 s calJac3.chr3 21270984 11 - 190850796 ACCTGAAGAGT i calJac3.chr3 C 0 I 312 s mm10.chr5 49255791 11 + 151834684 TCCCGAGGCTT i mm10.chr5 C 0 C 0 s canFam3.chr3 3846459 10 - 91889043 -CCTGAAGTTT i canFam3.chr3 C 0 C 0 a score=2385522.000000 s hg38.chr4_KI270790v1_alt 147992 600 + 220246 AAAGAAATACAAAGCAGAGTCAGCGGTGCCCTGGGATGTTTCTGACTTTACAGGTCTGTCGAGCTTGGGAAGATACTGACATTTG--TTATATTTTTCTTAAAGCCTTTTCCAGTAAT--AAAAAGTACATCTTCTCTTCATTTCTACCAGATGTATTTTT-----ATTTTTGTCCAT-AAAAAATGTCCAAAGTCACACAGTTTACAATCTGAATGC--------------------------AGTGATTTCTCCGTACCAATACATATCACAGAATAAAATAAAAGTTGCTCACTGGCCTGAAAGATGGGCTACCATAACATCTGCCTACAAAGTGATTTGCTAAACAGCATTGGAAATGCATATCCCATTAAAAATGTAGCATTAGGGAATTCAT-CCAGAATAATGACAGAAGCACAAAAGCAGGATTAATTAGAACCCTATTTCTTTCTACTTAGGCCTCCTATGTAACATTATCTTCATATAATTTTGTTTTGTGGTCTAAAATAATTGTTTCTATATAAAAATGATTGTAATAGCTTTGCAGTTGTATGTGTTCACTCTTAAAAACCACAGACTTCATACACAGAATTACTAGAAAAACTAAAGTATTAACCAA-GAAAAAGATTCAGGCT s panTro4.chr4 21534324 600 + 193495092 AAAGAACTACAAAGCAGAGTCAGCGGTGCCCTGGGATGTTTCTGACTTTACAGGTCTGTCGAGCTTGGGAAGATACTGACATTTG--TTATATTTTTCTTAAAGCCTTTTCCAGTAAC--AAAAAGTACATCTTCTCTTCATTTCTACCAGATTTATTTTT-----ATTTTTGTCCAT-AAAAAATGTCCAAAGTCACACAGTTTATGATCTGAATGC--------------------------AGTGATTCCTCCGTACCAATACATATCACAGAATAAAATAAAAGTTGCTCACTGGCCTGAAAGATGGGCTACCATATTATCTGCCTACAAAGTGATTTGCTAAACAGCATTGGAAATGCATCTCCCATTAAAAATGTAGCATTAGGGAATTCAT-CCAGAATAATGACAGAAGAACAAAAGCAGGATTAATTAGAACCCTATTTCTTTCTACTTAGGCCTCCTATGTAACATTATCTTCATATAATTTTGTCTTGTGGTCTAAAATAATTGTTTCTATATAAAAATGATTGTAATAGCTTTGCAGTTGTATGTGTTCACTCTTAAAAACCACAGACTTCATACACAGAATTACTAGAAAAACTAAAATATTAACCAA-GGAAAAGATTCAGGCT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21711820 600 + 198332218 AAAGAAATACAAAGCAGAGTCAGCAGTGCCCTGGGATGTTTCTGACTTTACAGGTCTGTCGAGCTTGGGAAGATACTGACATTTG--TTATATTTTTCTTAAAGCCTTTTCCAGTAAT--AAAAAGTACATCTTCTCTTCATTTCTACCAGATTTATTTTT-----ATTTTTGTCCAT-AAAAAATGTCCAAAGTCACACAGTTTACGATCTGAATGC--------------------------AGTGATTCCTCCGTACCAACACATACCACAGAATAAAATAAAAGTTGCTCACTGGCCAGAAAGATGGGCTACCATAACATCTGCCTACAAAGTGATTTGCTAAACAGCATTGGAAATGCATCTCCCATTAAAAATGTTGCATTAGGGAATTCAT-CCAGAATAATGACAGAAGCACAAAAGCAGGATTAATTAGAACCCTATTTCTTTATACTTAGGCCTCCTATGTAACATTATCTTCATATAATTTTGGTTTGTGGTCTAAAATAATTGTTTCTATATAAAAATGACTGTAATAGCTTTGCAGTTGCATGTGTTCGCTCTTAAAAACCACAGATTTCATATACAGAATTACCAGAAAAACTAAAATATTAACCAA-GGAAAAGATTCAGGCT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20323005 599 - 85365473 AAAGAAATACAAAGCAGAGTGAGCGGTGCCCTGGGATGTTTCTGACTTTACAGGTCTGTCGAGCTTGGGAAGATACTGACATTTG--TTATATTTTTCTTAAAGCC-TTTCCAGTAAT--AAAAAGTACATCTTCTCTTCATTTCTACCAGATTTATTTTT-----ATTTTTGCCCAT-AAAAAATGTCCAAAGTCACACAGTTTACGATCTGAATGC--------------------------AGTGATTCCTCCGTACCAACACATACCACAGAATAAAATAAAAGTTGTTCACTGGCCTGAAAGATGGGCTACCATAACATCTGCCTACAAAGTGATTTGCTAAACAGCATTGGAAATGCATCTCCCATTAAAAGCGTAGCATTAGGGAATTCAT-CCAGAATAATGACAGAAGCACAAAAGCAGGATTAATTAGAACCCTATTTCTTTCTACTTAGGCCTCCTACGTAACATTATCTTCATATAATTTTGGTTTGTGGTCTAAAATAATTGTTTCTATATAAAAATGATTGTAATAGCTTTGCAGTTGTATGTGTTTGCTCCTAAAAACCACAGATTTCATACACAGAATTACCAGAAAAACTAAAATATTAACCAA-GGGAAAGATTCAGGCT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16788736 599 + 184069350 AAAGAAATACAAAGCAGAGTCAGGGGTGCCCTGGGATGTTTCTGACTTTACAGGTCTGTCGAGCTTGGGAAGATACTGACATTTG--TTATATTTTTCTTAAAGCTTTTTCCAGTAAT--AAAAAGTACATCTTCTCTTCATTTCTACCAGATTTATTTTT-----ATTTTTGTCCAT-AAAAAATGCCCAAAGTCACACAGTTTACGATCTGAATGC--------------------------AGTGATTCCTCCATACCAACACATATCACAGAATAAAATAGAAGTTGCTCCCTGGCCTGAAAGATGGGCTACC-TAACATCTGCCTACAAAGTGATTTGCTAAACAGCATTGGAAATGCATCTCCCATTAAAAATGTAGCATTAGGGAATTCAT-CCAGGATAATGACAGAAGCACAAAAGCAGGATTAATTAGAACCCTATTTCTTTCTACTTGGGCCTCCTACGTAACATCATCTTCATATAATTTTGGTTTGTGGTCTAAAATAATTGTTTCTATATAAAAATGATTGTAATAGCTTTGCAGTTGTATGTGTTCGCTCTTAGAAACCACAGATTTCATACACAGAGTTACCAGAAAAACTAAAATATTAACCAA-GGAAAAGATTCAGGCT i rheMac3.chr5 C 0 I 6 s macFas5.chr5 20838709 599 + 189454096 AAAGAAATACAAAGCAGAGTCAGGGGTGCCCTGGGATGTTTCTGACTTTACAGGTCTGTCGAGCTTGGGAAGATACTGACATTTG--TTATATTTTTCTTAAAGCTTTTTCCAGTAAT--AAAAAGTACATCTTCTCTTCATTTCTACCAGATTTATTTTT-----ATTTTTGTCCAT-AAAAAATGCCCAAAGTCACACAGTTTATGATCTGAATGC--------------------------AGTGATTCCTCCATACCAACACATATCACAGAATAAAATAGAAGTTGCTCCCTGGCCTGAAAGATGGGCTACC-TAACATCTGCCTACAAAGTGATTTGCTAAACAGCATTGGAAATGCATCTCCCATTAAAAATGTAGCATTAGGGAATTCAT-CCAGGATAATGACAGAAGCACAAAAGCAGGATTAATTAGAACCCTATTTCTTTCTACTTGGGCCTCCTACGTAACATCATCTTCATATAATTTTGGTTTGTGGTCTAAAATAATTGTTTCTATATAAAAATGATTGTAATAGCTTTGCAGTTGTATGTGTTCGCTCTTAGAAACCACAGATTTCATACACAGAGTTACCAGAAAAACTAAAATATTAACCAA-GGAAAAGATTCAGGCT i macFas5.chr5 C 0 I 3 s papAnu2.chr5 16428679 601 + 178775436 AGAGAAATACAAAGCAGAGGCAGGGGTGCCTTGGGATGCTTCTGACTTTACAGGTCTGTCGAGCTTGGGAAGATACtgacatttg--ttatatttttcttaaggCTTTTTCCAGTAAT--AAAAAGTACATCTTCTCTTCATTTCtaccagatttattttt-----atttttgtccataaaaaaatgcccaaagtcacacagtttaCGATCTGAATGC--------------------------AGTGATTCCTCCATACCAACACATATCACAGAATAAAATAGAAGTTGCTCCCTGGCCTGAAAGATGGGCTACCATAACATCTGCCTACAAAGTGATTTGCTAAACAGCATTGGAAACGCATCTCCCATTAAAAATGTAGCATTAGGGAATTCAT-CCAGGATAATGACAGAAGCACAAAAGCAGGATTAATTAGAACCCTATTTCTTTCTACTTGGGCCTCCTACGTAACATCATCTTCATATAATTTTGGTTTGTGGTCTAAAATAATTGTTTCTATATAAAAATGATTGCAATAGTTTTGCAGTTGTATGTGTTCACTCTTAGAAACCACAGATTTCATACACAGAGTTaccagaaaaactaaaatattaaccAA-GGAAAAGATTCAGGCT i papAnu2.chr5 C 0 I 3 s chlSab2.chr27 19912689 600 - 48547382 AAAGAAATACAAAGCAGAGTCAGGGGTGCCCTGGGATGTTTCTGACTTTACAGGTCTGTCGAGCTTGGGAAGATACTGACATTTG--TTATATTTTTCTTAAAGCTTTTTCCAGTAAT--AAAAAGTACATCTTCTCTTCATTTCTACCAGATTTATTTTT-----ATTTTTGTCCAT-AAAAAATGCCCAAAGTCTCACAGTTTATGATCTGAATGC--------------------------AGTGATTCCTCCATACCAACACATATCACAGAATAAAATAGTAGTTGCTCCCTGGCCTGAAAGATGGGCTACCATAACATCTGCCTACAAAGTGATTTGCTAAACAGCATTGGAAATGCATCTCCCATTAAAAATGTAGCATTAGGGAATTCAT-CCAGGATAATGACAGAAACACAAAAGCAGGATTAATTAGAACCCTATTTCTTTCTACTTGGGCCTCCTACGTAACATCATCTTCATATAATTTTTGTTTGTGGTCTAAAATAATTGTTTCTATATAAAAATGATTGTAATAGCTTTGCAGTTGTATGTGTTCGATCTTAGAAACCACAGATTTCATACACAGAGTTACCAGAAAAACTAAAATATTAACCAA-GGAAAAGATTCAGGCT i chlSab2.chr27 C 0 I 7 s calJac3.chr3 21271307 588 - 190850796 aaagaaaTAGAAAGCAGAGTCAGGGGTGCCCTGGGATGTTTGTGACTTTACAGGTCTGTTGAGCTTGGGAAGATACTGATGTTTG--TTATATTTTTCTGAAAGCCTTTTCCAGTAAT--AAAAAGTATGCCTTCACTTCATTTCTACCAGATTT-TTTAT-----ATTTTTGTTCAT-AAAAAATGTCCAAAGTCACACAGTTTCCTATCTGAATGC--------------------------AATGATTCCTCCCTACCAACAAATATCACAAAATAAAATAAAAGTTGTTCACTGGCCTGAAAGATGGGCTACCATAACATCTGCCTACGAAGTGATTTGCTAAACAGCACTGGAAATATGTCTCCCATTAAAAACATAGCATTAGGGAATCCAT-CCAGAATAATGACAGAAGCACAAAAGCAGGAGTAATTAGAACCCTATTTCTTTCTACTCAAGCCTCCTACATAAC-----------ATGATTTTGGTTTGTGGTCTAAAATAATTGTTTCTGTATAAAAATGATTGCAATAGCTTTGCAGTTGTATGTGTCTGCTCTTAAAAACCACAGATTTCGTAGACAAAATTACCAGAAAAACTAAACTATTACCCAA-GGAAAAGATTCAGCCT i calJac3.chr3 I 312 C 0 s mm10.chr5 49255802 623 + 151834684 CCCAGAATAGAAAG-AGATGATGGAGAGTTGTGGAAGAGCTCCCA-TTCACAGACCTGTCAAGCTTGGAATGATACTGACATATGCTTTATTTTTTTTCTAAAACCCCTTCAAATGATGAAAAAAATGTATCTCCTCTTTATTTCTATCAGATATTTTAAA-----AAATGTATTCAC-AAGTCAT-TTCAAGATCACACAGTTTGCTATCTGGATACATGTTGCTCTCTCTCCAGCTCACAATAGTGGGCTATCCCTAACCATGCATACCATGCAATAAAA-AGCCGGCAATCATTAGCCAGAAAGATGAGCTCCC-TAACATCTGCCCATGAAATGATTTG-TACAGAGCACTGGAAGTGTGCCTCCAATGATAAATTTAGCATTATGTAATCCACACCAG--CGATGAGAATAGCAT-GGAGCAGTGTTAATTAGCATCCTACTGCTTTCTGCTTAGCCCTCCTACGTAACACTATCTTTGTGTAAGTTTGGATTGTGATCTAAAATAATTGATTCTATATAAAAACAATTGTAACAGCTTTGAAGTTATATGTGCTAACTCTTAAAAGCAACAGATCCCGCATGTAGAATCAACAAGGGGACCAAAACATCAACCAAGGGAAAAAAATCAGGCT i mm10.chr5 C 0 C 0 s canFam3.chr3 3846469 628 - 91889043 -AAAGAACAGAAAGCAGAGTTGGGAATGCCTTGAGGCATTTCTGGCCCTACAGCCCTCTTGAGCTTGCGGAGATATTGACATTTG--TTATATTTTTGTTAAAACCTTTTCCAGTAAT--GGAAAATATAGCTTCTCTTTATTTTTA-CATAGTCATTTTTCAAAAATTTTTGTCCGT-AAAGAATTTCCAAAGTTACATGGTTTACTATCTGATTACACATTTCTCCTCCCACAATCCACAAAAGATCTCCTTCCCTGCCCACCGACACCACAGAATAGAATAAAGGTTGCCCGCCGGCCTGAAAAAGAGGATACCATAACATCTGCCTACAAATTGATTTGCTAAACAGCACTGGGAACCTGTCTCCCGATATAAATGTGGCATTATGTAATCCAC-CCAGAAAAATGATAACAGCACAAAAGCAGCATTAATTAGGACCCTATTTCTTTCTACTTAGGCCTCCTACGTAACATTATCTTCATGTAATTTTGGTTTGTGGTCTAAAATACTTGTTTCTATATAAAAATGATTGTAACAGCTTTGCAATTACATATGTTCACTCTAAAAACCCACAGATCCTGTACAAAGAACTAACTGAAAGATTAAA-TATTAACCAA-GGAAAAGATTCAGGCT i canFam3.chr3 C 0 C 0 a score=618087.000000 s hg38.chr4_KI270790v1_alt 148592 652 + 220246 GGTACTGGACACATAAATA---TTGTTTTATCAGGAAAAAA-------GAGGAGAATTTG-GAGAGATGTTACACCAACATCCTCCAGCATTTCATGTTTTCCAAT-GGAAA-CTGAAACAGTGTTTCTAATAACTTGATTCAAGGGTTATTTTACAAAGAAAATAAAATGCAA--A---GATATATTTTACATCAATAATTTGAATTATACAAAAAAGAAGAAACTATTGATCATTTTCT--------TAGAATGTTACTATAATAGCTATTTC--CCTAGAAGAGGTTTCAATGCAGTCAAATTT-TGATCAGGCAAGTGGGAGAAGGTTA----AGA-CCTTAGAGGC----CTATTTCAGGA-TATCAGGGAAAAGGA---------------------AACTTGTAAAATAATTGTAAATCAGTTTTCTAAACTGATAATGTAGCCCTTATCGATAATGGTTTCTAACTTACTAATATTCTTGATTCTTTTGAGAAAAGAAGTTATCGATGACATTAAATGGATGACATTACTTAAATGTCATCAAATGGTTAATGGATGACATTAAAATGTGTATCAAGGTGATTGTGGCCTTCTTTTTTAAATAAA-AATTTTTCCTAAAGTGTGTA----GAT----TGTTGAGGATTGTCTGCTTACTGTGAAAAGCTGATGCCTGTCCA---CAAGGGTAGCTTGGAGGTGCCCATCGGAGGAA s panTro4.chr4 21534924 653 + 193495092 GGTACTGGACACATAAATA---TTGTTTTATCAGGAAAAAA-------GAGGAGAATTTG-AAGAGATGTTATACCAACATCCTCCAGCATTTCATGTTTTCCAAT-GGAAA-CTTAAACAGTGTTTTTAATAACTTGATTCAAGGGTTATTTTACAAAGAAAATAAAATGCAA--G---GATATATTTTACATCAATAATTTGAATTATACAAAAAAGAAGAAACTATTGATCATTTTTT--------TAGAATGTTGCTATAATAGCTATTTC--CCTAGAAGAAGTTTCAATGCAGTCAAATTT-TGATCAGGCAAGTGGGAGAAGGTTA----AGACCCTTATAGGC----CTATTTCAGGA-TATCAGGGAAAAGGA---------------------AACTTGTAAAATAATTGTAAATCAGTTTTCTAAACTGATAATGTAGCCCTTATCGATAATGGTTTCTAACTTACTAATATTCTTGATTCTTTTGAGAAAAGAAGTTATCGATGACATTAAATGGATGACATTACTTAAATGTCATCAAATGGTTAATGGATGACATTAAAATGTGTATCAAGGTGATTGTGGCCTTCTTTTTTAAATAAA-AATTTTTCCTAAAGTGTGTA----GAT----TGTTGAGGATTGTCTGCTTACTGTGAAAAGCTGATGCCTGTCCA---CAAGGGTAGCTTGGAGGTGCCCATCGGAGGAA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21712420 650 + 198332218 GGTACTGCACACATAAATA---TTGTTTTATCTGGAAAAAA----------GAGAATTTG-GAGAGATGTTGTACCAACATCCTCCAGCATTTCATGTTTTCCAAT-GGAAA-CTTAAACAGTGTTTCTAATAACTTGATTCAAGGGTTATTTTACAAAGAAAATAAAATGCAA--A---GATATATTTTACATCAGTAATTTGAATTATACAAAAAAGAAGAAACTATTGACCATTTTTT-------AAAGAATGTTGCTATAATAGCTATTTC--CCTAGAAGAGGTTTCAATGCAGTCAAATTT-TGATCAGGCAAGTGGGAGAAGGTTA----AGA-CCTTAGAGGC----CTATTTCAGGA-TATCAGGGAAAAGGA---------------------AACTTGTAAAATAATTTTAAATCAGTTTTTTAAACTGATAATGTAGCCCTTATTGATAATGGTTTCTAACTTACTAATATTCTTGATTCTTTTGAGAAAAGAAGTTATGGATGACATTAAATGGATGACATTACTTAAATGTCATCAAATGGTTAATGGATGACATTAAAATGTGTATCAAGGTGACTGTGGCCTTCTTTTTTAAATAAA-AAGTTTTCCTAAAGTGTGTA----GAT----TGTTGAGCATTGTCTGCTTACCGTGAAAAGCTGATGCCTGCCCA---CAAGGGTAGCTGGGAGGTGCCCATCGGGGGAA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20323604 637 - 85365473 GGTACCGCACACATAAATA---TTGTTTTATCAGGAAAAAA-------GAAGAGAATTTG-GAGTGATGTTATACCAGTATCCTCCAGCATTTCACGTTTTCCAAT-GGAAA-CTTAAACAGTGTTTCTAATAACTTGATTCAAGGGTTATTTTACAAAGAAAATAAAATGCAA--A---GATATATTTTACATCAATAATTTGAA-TATACAAAAAAGAAGAAACTATTGATCATTTTTT-------TTAGAATGTTGCTATAATAGCTATTTC--CCTAGAAGAGGTTTCAATGCAGTCAAATTT-TAATCAGGCAAGTGGGAGAA-ATTA----AGA-CCTTAGAGGC----CTATTTCAGGA-TATCAGGGAAAAGGA---------------------AACTTGTAACATAATTGTAAATCAGTTTTTTAAACTGATAATGTAGCCCTTATCGATAATGGTTTCTAACTTACTAATATTCTTGATTCTTTTGAGAAAAGAAGTT--------------ATGGATGACATTACTTAAATGTCATCAAATGGTTAGTGGATGACATTAAAATGTGTATCAAGGTGATTGTGGCCTTCTTTTTTAAATAAA-AATTTCTCCTAAAGTGTGTA----GAT----TGTTGAGCATTGTCTGCTTACTGTGAAAAGCTGATGGCTGTCCA---CAAGGGTAGCTGGGAGGTGCCCATCGGTGGAA i nomLeu3.chr20 C 0 C 0 s calJac3.chr3 21271895 655 - 190850796 GGTACTTCACACATAAATA--TTTGTTTTACTGGGGAAAAAACAAGGGGGGGAGAGTTTG-GAGAGA--------------CATCCAGGATTTCATGTTTTCCAAC-AGAAA-TGTAAACAGTGTTGCTAATAACTTAATGCAAGGATTATTTTACAAAGAAAATAAACTGCAA--A---GATATATTTTACATTGATAATTTGAATTATACAAAAAGAACAAACCttttttttttttttttttttttttAGAATGTTGCTATAATACCCATTTC--CCTAGAAGAGGTTTCAATGCAGTCAA--TT-TGATCAGGCAAGTCGAAAAAGGTTA----AGA-CCTTAGAGGC----GTATTTGAGGA-TATCAGGGAAAAGGAA------------------ATAACTTGAAAAATAATTGTAAATCAGTTTTTTTAACTGATAATGTAGCCCTTGGCAAT-ACAGTTTCTAAATTACTACCATTCTTAATTCTTTTGAGTAAAGAAGTTATCGATGACATTAAATGAATGACATTAATTAAATGTCATCAAATGGTTAATGGATGACATTAAAACATGTATCAAGGTGATTGTGGCCTTCTTTTATAAATAAATGTTTTTTCTTAAAGTGTGTA----GAT----TGCTGAGCATTGTCTGTATACTGTGAAAAGCTGATTCCTGTCCA---CAAGGGTAGCTGGGGGTTGCCCAGCCTGGGAA i calJac3.chr3 C 0 C 0 s mm10.chr5 49256425 618 + 151834684 GCCATTGCATATACAAAGGAATTTGGTACACAAGAAAGGAG-------GAGGGAGATATGAGAAAGATATT-TACTATACTCCTCTGGGATTTTCTATTTTCTAAT-ACAGACCTTAGTCAGCAATTCTCATAATT-----------TTACTTTATAAAATAAACAATATACTAGCa---aatataatttatatttataatttGAA-CACAGGTAAAGGAAACAA-------TAACTTTTT--------TAAAATGCTGATATAATGGCTACCTCTGCATAAAAGAACTTGC-ACGTGAACAAATTT-GGTGCCCAAATGTGGTAGAATCTTAAATCAGA-CCTTAGAAGAAAGGCTCCTTTATAC-CACAAGGGAAAAGAAA-AATCAATTCTCCCAGATAAGACCTGTAAACTCACTGTAAATTCGTTTTC-AAAAAATTACTGTAGTCCTTGTCAACAGTGTTT------CTCCTCACACTCTTAATCACTTTGAGGAATAAATTTAT------------ACAG---------------------------------GGGTGATATTAAAATTCATATTAATGTGACGGCAACCTTCTTC----AACAAA-GTCCTTTCCCAGAGTGTGCATAGTGAG----TTGTGAGGACAGAGTTTTAACTACAGAAGATTAACG-CTGTGCACTGCTGAGGAAGCCGAGCTTTGTGGGTGGTAGTGG i mm10.chr5 C 0 C 0 s canFam3.chr3 3847097 612 - 91889043 GGTATTGCACAGATAAATG--TTTATTACATCTGGAAAAAG------CCAGGAGGAATAG-GAGAAAGGTTATACCAACATCCTCTAGTACTTTCTATTTTCTAATAGGAAA-CTTAAACAGTAACTCTAATAATTTGTTCCTAGGG---CTCAAAAGAGAAAATCAAACATAA--AGTCGATACGTTTTACATTGGTAATTTAAA-CCCACCAAAAAGAAGAGA-TATTGACTATTTTCT-------TTTTAATGTTGCTATCATAGCTATTTA--CCCAGAAAATGTTTCACAACAGTCTCATTTGGGGGCAGGCAAGTGGACGCAGGTTA----AGA-CCCCAGAGTGAGGGCTATTTGAGAATTATCAGGGCAGAGGGGAAAGCAATTATTGTCAACAAAACATAGAAAATAATTTCAAAGCGGTTTTT-AAACTGTTCATGTAGCCCTTGCCA---GTGGTTTCTAACTCACTTTAAGTCTCGACGCTTTTGAGAAAAGAAAGT---------------------------------------------GTACACAGGTGACATTAAAGCGCATATCAAGCTGGCTG---CCACCTTTTTTAAAATCC-CTTTTTTTGCAAAGTGTACA----GATGGAGTTTTGATAATAGTCTCCTGACTATGAAAAGCTGACCCCGGTGCA---CAACGGGGGTA--------------------- i canFam3.chr3 C 0 C 0 e chlSab2.chr27 19913289 7 - 48547382 I e macFas5.chr5 20839308 3 + 189454096 I e rheMac3.chr5 16789335 6 + 184069350 I e papAnu2.chr5 16429280 3 + 178775436 I a score=-140.000000 s hg38.chr4_KI270790v1_alt 149244 3 + 220246 CAT-- s panTro4.chr4 21535577 3 + 193495092 TAT-- i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21713070 3 + 198332218 CAT-- i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20324241 3 - 85365473 CAT-- i nomLeu3.chr20 C 0 C 0 s macFas5.chr5 20839311 3 + 189454096 CAC-- i macFas5.chr5 I 3 C 0 s papAnu2.chr5 16429283 3 + 178775436 CAC-- i papAnu2.chr5 I 3 C 0 s calJac3.chr3 21272550 3 - 190850796 CAT-- i calJac3.chr3 C 0 C 0 s mm10.chr5 49257043 3 + 151834684 TGC-- i mm10.chr5 C 0 I 1 s canFam3.chr3 3847709 3 - 91889043 --TGA i canFam3.chr3 C 0 C 0 e chlSab2.chr27 19913289 7 - 48547382 I e rheMac3.chr5 16789335 6 + 184069350 I a score=1888.000000 s hg38.chr4_KI270790v1_alt 149247 1 + 220246 G s panTro4.chr4 21535580 1 + 193495092 G i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21713073 1 + 198332218 G i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20324244 1 - 85365473 T i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16789341 1 + 184069350 G i rheMac3.chr5 I 6 C 0 s macFas5.chr5 20839314 1 + 189454096 G i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16429286 1 + 178775436 G i papAnu2.chr5 C 0 C 0 s calJac3.chr3 21272553 1 - 190850796 G i calJac3.chr3 C 0 C 0 s canFam3.chr3 3847712 1 - 91889043 G i canFam3.chr3 C 0 C 0 e mm10.chr5 49257046 1 + 151834684 I e chlSab2.chr27 19913289 7 - 48547382 I a score=498477.000000 s hg38.chr4_KI270790v1_alt 149248 142 + 220246 GGGAGCGGAGTGTA--AGCCTTTGGGAGCACCGTGCTATGACTGCAGATG-CTCCCTGGCTGCTCAGAGCCTAGCTGTGACTAAGCCAAGGCTACTCTACTACCTGCTTTCTTCATGTCTTCAATGGCTTAGGACTGGCTTCATA s panTro4.chr4 21535581 142 + 193495092 GGGAGCGGAGTGTA--AGCCTTTGGGAGCACCGTGCTATGACTGCAGATG-CTCCCTGGCTGCTCAGAGCCCAGCTGTGACTAAGCCAAGGCTACTCTCCTACCTACTTTCTTCATGTCTTCAATGGCTTAGGACTGGCTTCATA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21713074 142 + 198332218 GGGAGCGGAGTGTA--AGCCTTTGGGAGCACCGTGCTATGACTGCAGATG-CTCCCTGGCTGCTCAGAGCCCAGCTGTGACTAAGCCAAGGCTACTCTACTACCTGCTTTCTTCATGTCTTCAATGGCTTAGGACTGGCTTCATA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20324245 142 - 85365473 GGGAGCGGAGTGTA--AGCCTTTGGGAGCACCGTGCTATGACTGCAGATG-TTCCCTGGCTGCTCAGAGCCCAGCTGTGACTAAGCCAAGGCTACTCTACTACCTGCTTTCTTCATGTCTTCAATGGCTTAGGACCGGCTTCATA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16789342 142 + 184069350 GGGAGGGGAGTGTA--AGCCTTTGGGAGCACCATGCTATGACTGCAGTTG-CTCTCTGGCTGCTCAGAGCCCAGATGTGACTAAGCCAAGGCTACTCTACTACCTGCTTTCTTCATGTCTTCAATGGCTTAGGACTGGCTTCATA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20839315 142 + 189454096 GGGAAGGGAGTGTA--AGCCTTTGGGAGCACCATGCTATGACTGCAGGTG-CTCTCTGGCTGCTCAGAGCCCAGCTGTGACTAAGCCAAGGCTACTCTACTACCTGCTTTCTTCATGTCTTCAATGGCTTAGGACTGGCTTCATA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16429287 142 + 178775436 GGGAGGGGAGTGTA--AGCCTTTGGGAGCACCATGCTATGACTGCAGGTG-CTCCCTGGCTGCTCAGACCCCAGCTGTGACTAAGCCAAGGATACTCTACTACCTGCTTTCTTCATGTCTTCAATGGCTTAGGACTGGCTTCATA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19913296 137 - 48547382 GGGAGGGGAGTGTA--AGCCTTTGGGAGCACCATGCTATGACTGCAGGTG-CTCCCTGGCTGCTCAG-----AGCTGTGACTAAGCCAAGGCTACTCTGCTACCAGCTTTCTTCATGTCTTCAATGGCTTAGGACTGGCTTCTTA i chlSab2.chr27 I 7 C 0 s calJac3.chr3 21272554 142 - 190850796 GGGCGCGAAGGGTA--AGCCTTTGGGAGCACTGTGCTATGATTGCCGATG-TTCCCTGGCTACTCAGAGCCCAGCTGTGACTAAGCCAAGGCTGCTCTATTAGCTGCTTTCTTCATGTCTTCAATGGTTTAGGACTGGCTTTATA i calJac3.chr3 C 0 C 0 s mm10.chr5 49257047 130 + 151834684 -GGCAGGGTGTGTA------TTTGGAAACTTTG------GATAGCATTTGTTTCCTTGGATGTGCAGAGGCCAGCAGTGACTAAGCATGGG--GGTTTGCTATCCACTTTCTGATTGTCTTTCACAGCATACCACAGGTCTTATA i mm10.chr5 I 1 I 609 s canFam3.chr3 3847713 134 - 91889043 GGGAGGGGAGGGAAGAAGAGTTGGGGAGCATTGTGCTG-----GTGAATG-C-CTCTGTCTGTTCAGAGGCCAG-TGAGATTAAATAAAGTCTATT---TTACCTGTGTTCTGCATGCCTTCAAAGGCATAAGATTGGTCTTATA i canFam3.chr3 C 0 C 0 a score=54141.000000 s hg38.chr4_KI270790v1_alt 149390 15 + 220246 ACTAGCTTCTGGTTG s panTro4.chr4 21535723 15 + 193495092 ACTAGCTTCTGGTTG i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21713216 15 + 198332218 ACTAGCTTCTGGTTG i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20324387 15 - 85365473 ACTAGCTTCTGGTTG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16789484 15 + 184069350 AGTAGCCTCTGGTTG i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20839457 15 + 189454096 AGTAGCCTCTGGTTG i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16429429 15 + 178775436 AGTAGCCTCTGGTTG i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19913433 15 - 48547382 AGTAGCCTCTGGTTG i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21272696 15 - 190850796 ACTAGCTTCTGGTTG i calJac3.chr3 C 0 C 0 s canFam3.chr3 3847847 15 - 91889043 ACTAGCTTCTGGGTG i canFam3.chr3 C 0 C 0 e mm10.chr5 49257177 609 + 151834684 I a score=1186108.000000 s hg38.chr4_KI270790v1_alt 149405 338 + 220246 TTgctcactgacccacacaggccttgaacctgtgatcctgacctTGCTTGTTCTAAGGCCTAATAACTATGAGTGGTGTCTAATACTCACTGATTCTT------GAAAGGTCCTGTAGAACCCAATAAGCTTCCCTCAGGCACTTCTGCACACACTCTGGGACATCCTTTCAGCAAGTCC-ATTCCAGAGGAGTTTGACATCTACAAAACAGAAATCCc-catgctagatccttatacagcttccaaaatctcattctcacaacagcactattttgttggt------------atgatat-----ccaaggtaaagaatgatgttgcaacttcctcagagtcacagtgctaaataacttcaga s panTro4.chr4 21535738 338 + 193495092 TTGCTCACTGACCCACACAGGCCTTGAACCTGTGATCCTGACCTTGCTTGTTCTAAGGCCTAATAACTATGAGTGGTGTCTAACACTGACTGATTCTT------GAAAGGTCCTGTAGAACCCAATAAGCTTCCCTCAGGCACTTCTGCACACACTCTGGGACATCCTTTCAGCAAGTCC-ATTCCAGAGGAGTTTGACATCTACAAAACAAAAATCCC-CATGCTAGATCCTTATATAGCTTCCAAAATCTCATTCTCACAACAGCActattttgttggt------------atgaaat-----ccaaggtaaagaatgatgttgcaacttcctcaaagtcacagtgctaaataacttcaga i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21713231 338 + 198332218 TTGCTCACTGACCCACATAGGCCTTGAACCCGTGATCCTGACCTTGATTGTCCTAAGGCCTAATAACTATGAGTGGTATCTAACACTGACTGATTTTT------GAAAGGTCCTGTAGAACCCAATAAGCTTCCTTCAGGCACTTCTGCACACACTCTGGGACATCCTTTGGGCAAGTCC-ATTCCAGAAGAGTTTGACATCTATGAAACAGAAATCCC-CAAGCTAGATCCTTATATAGCTTCCAAAATCTCATTCTCACAACAGCActattttgttggt------------atgaaat-----caaaggtaaagaatgatgttgcaacttcctcaaagtcacagtgctaaataacttcaga i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20324402 338 - 85365473 TTGCTCACAGACCCACATAGGCCTTGAACCTGTGATCCTGACCTTGCTTGTTCTAAGGCCTAATAACTATGAGTGGTGTCTAACACTGACTGATTTTT------GAAAGGTCCTGTAGAACCCAATAAGCTTCTCTCAGGCACTTCTGCACACACTCTGGGACATCCTTTCAGCAAGTCC-ATTCCAGAAGAGTTTGACATCTATGAAACAGAAATCCC-CATGCTAGATCCCTATATAGCTTCCAAAATCTCAATCTCAcaacagcactattttgttggt------------atgaaat-----ccaaggtaaagaatgatgttgcaacttcctcaaagtcacagtgctaaataacttcaga i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16789499 338 + 184069350 GTGCTCACTTACCCACATAGGTCTTGAACCTGTGATCCTGACCTTGCTTGTTCTAAGGCCTAATAACTATGAGTGGTGTCTAACACTGATTGATTTTT------GAAAGGTCCTGTAGAACCCAATAAGCTTCCTTCAGGCACTTCTGGACACACTCTGGGATGTCCTTTGGGCAAGTCC-ATTCCAGAAGAGTTTGACATCTAGAAAACAGAAATCCC-CATGCTAGATCCTTATATAGCTTCCAAAATCTCATTCTCACAACAGCActattttgtaggt------------ataaaat-----ccaaggtaaagaatgatgttgcaacttcctcaaagacacagtgctaaataacttcaga i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20839472 338 + 189454096 GTgctcacttacccacataggtcttgaacctgtgatcctgacctTGCTTGTTCTAAGGCCTAATAACTATGAGTGGTGTCTAACACTGACTGATTTTT------GAAAGGTCCTGTAGAACCCAATAAGCTTCCTTCAGGCACTTCTGGACACACTCTGGGATGTCCTTTGGGCAAGTCC-ATTCCAGAAGAGTTTGACATCTAGAAAACAGAAATCCC-CATGCTAGATCCTTATATAGCTTCCAAAATCTCATTCTCAcaacagcactattttgtaggt------------ataaaat-----ccaaggtaaagaatgatgttgcaacttcctcaaagtcacagtgctaaataacttcaga i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16429444 338 + 178775436 TTGCTCACTTACCCACATAGGTCTTGAACCTGTGATCCTGACCTTGCTTGTTCTAAGGCCTAATAACTATGAGTGGTGTCTAACACTGACTGATTTTT------GAAAGGTCCTATAGAACCCAGTAAGCTTCCTTCAGGCACTTCTGGACACACTCTGGGATGTCCTTTGGGCAAGTCC-ATTCCAGAAGAGTTTGACATCTAGAAAACAGAAATCCC-CATGCTAGATCCTTATATAGCTTCCAAAATCTCATTCTCACAACAGCACTATTTTGTAGGT------------ATAAAAT-----CCAAGGTAAAGAATGATGTTGCAAATTCCTCAAAGTCACAGTGCTAAATAACttcaga i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19913448 338 - 48547382 TTgctcacttacccacataggtcttgaacctgtgatcctgacctTGCTTGTTCTAAGGCCTAATAACTATGAGTGGTGTCTAACACTGACTGATTTTT------GAAAGGTCCTGTAGAACCCAATAAGCTTCCTTCAGGCACTTCTGGACACACTCTGGGATGTCCTTTGGGCAAGTGC-ATTCCAGAAGAGTTTGACATCTAGAAAACAGAAATCCC-CATGCTAGATCCTTATATAGCTTCCAAAATCTCATTCTCACAACAGCActgttttgtaggt------------ataaaat-----ccaaggtaaagaatgatgttgcaacttcctcaaagtcacagtgctaaataacttcaga i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21272711 328 - 190850796 ----TCACTGATCTGCATGGGCCTTGAACCT-TGATCC----------TGTTCTAAGTCCTAGTAACTATGAGTAGAGTCTAACACTGACTGATTTTT------GAAAGGTCCCATAGAACCCAATAAACTTCCTTCAGGCACTCTTGCACATACTCTGGGACGCCCTTTGGCCAAGTCC-ATTCTGGAAAAGTTTGAAAGCTACGATACAGAAATCCT-CATGCTAGATCCTTATATAGCTTCTGAAatctcattctcacaacagcactatgttgtaggt------------aagaaatcaaacccaaggtgcagaatgatgttgcaacttcctcaaagtcacaatactaaataactttagg i calJac3.chr3 C 0 C 0 s mm10.chr5 49257786 346 + 151834684 TTACTAATTGACTCAAACAAGCCTTGAGTCTGTGTTTATGACCTGATTTGTGCTAAGCTCTAATGTCTTTCATTGA-ATGTCACATCTGTTAATTTCT-------AATGATCCTTTAGAATTCAATGATTTCCTTCCAGGATTTTCTGCACCGGCTCTGAAACCTTCTTTAGCCATTTTCTATTTCAGAAAAGCTTGAGAA--AAGCTGCATCAGTTCC-TGAACTGGACAGATATGTTGCTTCTGAGGTCTCCTTCCCACAACAACAATGTTTTCTTGGCAAAAAAAAAAAAAAAAAAT-----TGAAGATATAGAGTAACGGT-CAACTTCCCCCAGGTCATGGTACTAATTAACTTCTGA i mm10.chr5 I 609 I 31 s canFam3.chr3 3847862 304 - 91889043 TTGCAAATTGACCCACATGGGCCTGGAACCTGTGATCACGATCTTGCTTGTCCCAAGGCCTAATGCCTTTGCCGTGAGTATAGCATTGCGTCATTTCTGAAAGTGAAAGTTCCCTTAGAACCCACTAACCTCCCGCCAGGCACTTGTG--CATACTTTGTGGCGGTCTCTAACCAAATCT-ATTCTAGAAAAGCCTAACGTCTAACATATCGAAGTCCCTTTTAAGATACACTTAGATAGCTTCTGAAATCTTGTTCCCACACCACCACCACTATGTAGGT------------AAGAAAT-----CCAAGGCGCAGAA---------------------------------------ATcaga i canFam3.chr3 C 0 C 0 a score=55835.000000 s hg38.chr4_KI270790v1_alt 149743 15 + 220246 gctagaattcaaact s panTro4.chr4 21536076 15 + 193495092 gctagaattcaaact i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21713569 15 + 198332218 gctaggattcaaact i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20324740 15 - 85365473 gctaggattcaaact i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16789837 15 + 184069350 gctgggattcaaact i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20839810 15 + 189454096 gctgggattcaaact i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16429782 15 + 178775436 gctaggattcaaact i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19913786 15 - 48547382 gctgggattcaaact i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21273039 15 - 190850796 gctgggattcaaacc i calJac3.chr3 C 0 C 0 s canFam3.chr3 3848166 15 - 91889043 gctaggattcaagcc i canFam3.chr3 C 0 C 0 e mm10.chr5 49258132 31 + 151834684 I a score=835466.000000 s hg38.chr4_KI270790v1_alt 149758 324 + 220246 tagg-tttttttgtttgct---------tttgttttgtttc-------------------------------------tttttttttgagacagagtcttgctgtgttgcccaggctggagtgcagtggcacaaccttggctcactgcaacctctgcctccctggctcaagtgctttctcttgcctcagcctcctgagtagctgggactacaggtgtgcaccaccacaactggctaa------tttt-----------------------------------------tttttgtacttgtagtagagacagg-tttcaccatgttggccaggctggtcttgaactccttgcctcaagtgatccacccacctcagcctccaaaagtgctggcattacaggcgtgagccaccacacccga s panTro4.chr4 21536091 340 + 193495092 tagg-tttttttgTTTGCT---------TTTGttttgtttctttc---------------------------tttttttttttttttgagacagagtcttgctgtgttgcccaggctggagtgcagtggcacaatcttggctcactgcaacctctgcctccctggctcaagtgctttctcttgcctcagcctcctgagtagctgagattacaggtgtgcaccaccacaactggctaatttttttttt-----------------------------------------tttttgtacttttagtagagacagg-tttcaccatgttggccaggctggtcttgaactccttgcctcaagtgatccacccacctcagcctccaaaagtgctggcattacaggcgtgagccaccacacccga i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21713584 332 + 198332218 tagg-tttttttgTTTGtt---------tttgttttgtttc-------------------------------attttttttttttttgagacagagtcttgctgtgttgcccaggctagagtgcagtggcacaatcttggctcactgcaacctctgcctccttggctcaagtgctttctcttgcctcagcctcccgagtagctgggattacaggtatgcaccaccacaactggctaa----tttatt-----------------------------------------tttttgtacttttagtacagacagg-tttcaccatgttggccaggctggtcttgaactccttgcctcaagtgatccacccacctcagcctccaaaagtgctggtattacaggcatgagccaccacacctga i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20324755 325 - 85365473 tagg-ttttttTAtttgtt---------tttgctttgtttc-------------------------------------attttttttgagacagagtcttgctgtgttgcccaggctgcagtggagtggcacaaccttggctcactgcaacctctgcctccccggctcaagtgctttctcttgcctcagcctcctgagtagctaggattacaggtgtgcaccaccacaactggctaa----tttatt-----------------------------------------tttttgtacttttagtagagacggg--ttcagcatgttggccaggctggtcttgaactccttgcctccagtgatccacccacctcagcctccaaaagtgctggcattacaggcgtgagccaccacacccga i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16789852 335 + 184069350 caggTtttttttgtttgtt---------tttg-tttgtttgtttg----------------------------tttgtttgttttttgagacagagtcttgctgtgttgcccaggctggagtgcagtggcataatcttggctcactgcaacctctgcctccccggctcaagtgatttctcttgcctcagcctcctgagtagctgggattacaggtgtgcaccaccacaactggttaa-----tttat-----------------------------------------tttttgtatttttagtagagacagggtttcaccatattggccaggccggtcttgaactgcttgcctcaagggatccacccacctcagcctccaaacgtgctggcattacaggtgtgagccaccacgcccga i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20839825 331 + 189454096 caggTTTTTtttgtttgtt--------------tttgtttgtttg----------------------------tttgtttgttttttgagacagagtcttgctgtgttgcccaggctggagtgcagtggcataatcttggctcactgcaacctctgcctccccggctcaagtgatttctcttgcctcagcctcctgagtagctgggattacaggtgtgcaccaccacaactggttaa-----tttat-----------------------------------------tttttgtatttttagtagagacagggtttcaccatattggccaggctggtcttgaactgcttgcctcaagggatccacccacctcagcctccaaacgtgctggcattacaggtgtgagccaccacgcccga i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16429797 354 + 178775436 cagggtttttttgtttgtttgtttttgttttgttttgtttttttg-------------------ttttttgtttttgttttttttttgagacagagtcttgctgtgttgcccaggctggagtgcaatggcataatcttggctcactgcaacctctgcctccccggctcaagtgatttctcttgcctcagcctcctgagtagctgtgattacaggtgtgcaccaccacaactggttaa-----tttat-----------------------------------------tttctgtatttttagtagagacagggtttcaccatattggctaggctggtcttgaactccttgcctcaagtgatccacccacctcagcctccaaacgtgctggcattacaggtgtgagccaccacacccga i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19913801 367 - 48547382 taggAtttttttgtttgtttgtt-----tttg-tttgtttttttctttttctttttctttcttttttttttttttttttttttttttgacacagagtcttgctgtgttgcccaggctggagtgcagtggcataatcttggctcactgcaacctctgcctccccggctcaagtgatttctcttgcctcagcctcctgagtagctgggattacaggtgtgcaccaccacaactggttaa-----tttat-----------------------------------------tttttgtatttttagtagagacagggtttcaccatattggccaggctggtcttgaactccttgcctcaagtgatccacccacctcagcctccaaacatgctggcattacaggtgtgagccaccactcccga i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21273054 323 - 190850796 caga------------------------------------------------------------------------------------------agtctcgatttgttgtccaggctagagtgcagtaggaaaatcttatctcatggcaacctctgcctccctggctccagcaa-ttctcctgcctcagcctcccgaggagctgggattacaggtttgcaccactatggctggctaa-----tttatatatatgtatatatatatatatatatatatatatatatatatatatatatttttagtagagacagcattttgccatgttgtctaggctggtcttgaacttcttacctcaagtgatctgctcaccccagtctcccctagtgctgggattacaggcctgagccaccacacctga i calJac3.chr3 C 0 C 0 e mm10.chr5 49258132 31 + 151834684 I e canFam3.chr3 3848181 0 - 91889043 C a score=75502.000000 s hg38.chr4_KI270790v1_alt 150082 23 + 220246 caggtcttctga---tacctctattg s panTro4.chr4 21536431 23 + 193495092 cAGGTCTTCTGA---TACCTCTATTG i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21713916 23 + 198332218 cAGGTCTTCTGA---TACCTCTATTG i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20325080 23 - 85365473 cAGGTCTTCTGA---TACCTCTATTG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16790187 23 + 184069350 cAGGTCTTCTGA---TACATATATCA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20840156 23 + 189454096 caggtcttctga---tacatatatca i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16430151 23 + 178775436 cagGTCTTCTGA---TACATCTATCA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19914168 23 - 48547382 cAGGTCTTCTGA---TACATCTATCA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21273377 23 - 190850796 caggtcttctga---tacatctatca i calJac3.chr3 C 0 C 0 s canFam3.chr3 3848181 26 - 91889043 caggtcttctgagttcacatccgttg i canFam3.chr3 C 0 C 0 e mm10.chr5 49258132 31 + 151834684 I a score=3743332.000000 s hg38.chr4_KI270790v1_alt 150105 1155 + 220246 cTAATGCTCCTAAACTGCACAGCAGTTCTGTGAACTAGTCACA-TTTAAACCA-CCTGCAAATGCTCTGCAGTAGATAGACCTGTCAAAC---------------------------------------------------AAAAAACAGAGGCAACCAAAACAAACAC----TCTCCCTAACCTACTTCTTAAACAGAGAC-----AAAAAAAAAAAAATAGGAACCA--GAGAAAGCAATTATTCCCATAGCATATTTAAACCAGATAAATATTTCTGCTTGCCATCTTGCAATTTGAAAGTTGGAAATGGCTTATGGTGAGTTA-AAGAGTTTGGAATGTGGGCCTATCT-----AGGAAG-----atagcaaagtcgttaaaagtg-aagtttctgaggtcaggcacctcagtttatcttctagctttgttgtttatgatctaggtggctttaggcagtttgcttaatctcct-gtctctcagttGCTtcccagatatacactcgagag-ttg-aaaaataacattcttaatataattcctgttccttcatctcaccatgccacctatagacta-----------ttttttaaatgcctatg---gact------attttttaaatg--cctactgtgaagacttttgtgcattgcacaactttatggcattgtttttgcatt---aaa--------tgttttc---catatataattataaaattatcacaatagt--tgttgtgacatgatttggtacttctttaattt---------ttaata-------AAAGCCTAA----------AAAATGAAAATGGCTTGAATTTCC---Aggtcttggaaagtcctgacttaaattcatggatgcttaatttatctgtcacatgatc--------tattaatggctatcatatagta-tt-tttggtgaagattaaataaaatag--gacgtgaggac-cagcacaatgtctgacatatagtgggctctcaataaatcacttctgtta---ttTTTCAGAAAGAAATAA------TTTTTTAAAGCTTTATCGTTGGTCCTCTGATTAGCCAGCATAC--CCCCAAAGTTCAGGAAATATATGGAAAGTGAAAATTTTATA-ACTTCTGGAAACCTCCTCCATGTCCAGGACCTTCCTCT---GGGTAAAACAGAGGAAGATTTGTTTTCATGAACCTTTCTTTCTCTTTAACATTTAGAGGTCGTGGGCAGAGAAGCCTTA-----GAAGACAGAAATTTAATTCAAAG-ACTA---AATGCATAGGAATGG-AATATTGTAGTAGGTGATATATTGCT-AAAAA s panTro4.chr4 21536454 1147 + 193495092 CTAATGCTCCTAAACTGCACAGCAGTTCTGTGAACTAGTCACA-TTTAAACCA-CCTGCAAATGCTCTGCAGTAGATACACCTGTCAAGC---------------------------------------------------AAAAAAC--AGGCAACCGAAACAAACAC----TCTCCCTAACCTACTTCTTAAACAGAGACaaaaaaaaaaaaaaaaaaaaGGAACCA--GAGAAAGCAATTATTCCCATAGCATATCTAAACCAGATAAATATTTCTGCTTGCCATCTTGCAATTTGAAAGTTGGAAATGGCTTATGGTGAGTTA-AAGAGTTTGGAATGTGGGCCTATCT-----AGGAAG-----atagcaaagtcgttaaaagcg-aagtttctgaggtcaggcacctcagtttatctcctagctttgttgtttatgatctaggtggctttaggcagtttgcttaatctcct-gtctctcagttGCTtcccagatatacactcgagag-ttg-aaaaataacattaccaatataattcctgttccttcatctcaccatgccacctatagacta-----------ttttttaaatgcctatg---gact------attttttaaatg--cctactgtgaagatttttgtgcattgcacaactttatggcattgtttttgcatt---aaa--------tgttttt---catatataattataaaattatcacaatagt--tgttgtgacatgatttggtacttctttaattt---------ctaata-------aaagcctaa----------aaaatgaaaatggcttgaatttcC---Aggtcttggaaaatcctgacttaaattcatggatgcttaatttatctgtcacatgatc--------tattaatggctatcatatagta-tt------------ttaaataaaatag--gacgtgaggac-cagcacaatgtctgacatatagtgtgctctcaataaatcacttctgtta---ttTTTCGGAAAGAAATAA------TTTTTTAAAGCTTTATCGCTGGTCCTCTGATTAGCCAGCATAC--CCCCAAAGTTCAGGAAATATATGGAAAGTGAAAATTTTATA-ACTTCTGGAAACCTCCTCCATGTCCAGGACCTTCCTCT---GGGTAAAACAGAGGAAGATTTGTTTTCATGAACCTTTCTTTCTCTTTAACATTTAGAGGTCGTGGGCAGAGAAGCCTTA-----GAAGACAGAAATTTAATTCAAAG-ACTA---AATGCATAGGAATGG-AATATTGTAGTAGGTGATATATTGCT-AAAAA i panTro4.chr4 C 0 I 1757 s ponAbe2.chr4 21713939 1139 + 198332218 CTAATGCTCCTAAACTGCACAGCAGTTCTGCGCACTAGTCAAATTTTAAACCA-CCTGCAAATGCTCTACAGTAGATACACCTGTCAAGA---------------------------------------------------AAAAAACAGAGGCAACCGAAACAAACAC----TCTCCCTAACCTACTTCTTAAACAGAGTC------AAAAAAAAAAAACAGGAACAA--AAGAAAGCAATTATTCCCATAGCATATTTAAACCAGATAAATATTTCTGCTTGCCATCTTGCAATTTGAAAGTTGGAAATGGCTTATGGTGAGTTA-AAGAGTTTGGAATGTGGGCCTATCT-----AAGAAG-----atagcaaagtcgttaaaagca-aagtttttgaggtcaggcacctcagtttatcttctagctttgttgcttatgatctaggtggctttaggcagtttgcttaatctccc-gtgtctcagttgcttcCCAGATAGACACTCGAGAG-TTG-AAAAATAACATTCCTAATATAATTCCTGTTCCTTCATCTCACCATGCCACCTATA------------------------------------GACT------ATTTTTAAAATG--CCTACTGCGAAGATttttgtgcattgcacaactttatggcattgtttttctgtt---aaa--------tgttttt---catatataattttaaaattatcacaatagt--tgttgtgacatgatttggtacttctttaattt---------ttaata-------aaagcctaa----------aaaatgaaaatggcttgaacttcc---aggtcttggaaggtcctgacttaaactcatggatgcttaatttatctgtcatatgatc--------tattaatggctatcatacatta-ttttttggtgaagattaaataaaatag--gatgtgaggac-cagcacaatgtccgacatatagtgggctctcaataaatcacttctgtta---ttTTTCAGAAAGAAATAAATA--CTCTTTTTAAGCTTTATGACTAGTCCTCTGATTAGCCAGCATAC--CCCCAAAGTTCAGGAAAGATATGGAAAGTGAAAATTTTATA-ACTTCTGGAAACCTCCTCCATGTCCAGGACCTTCCTCT---GGGTAAAACAGAGGAAGATTTGTTTTCATGAACCTTTCTTTCTCTTTAACATTTAGAGGTCGTGGGCACAGAAGCCTTA-----GAAGACAGAAATTTAATTCAAAG-ACTA---AATGCATAGGAATGGAAATATTGTAGTAGGTGATAGATTGCT-AAAAA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20325103 1156 - 85365473 CTAATGCTCCTAAACTGCACAGCAGTTCTGTGCACTAGTCACA-TTTAAACCA-TCTGCAAATGCTCTACAGTAAATACACCTGTCAAGA---------------------------------------------------AAAAAACAGAGGCAACCGAAACAAACAC----TATCCTTAACCTACTTCTTAAACGGAGAC--------AAAAAAAAAATAGGAACCA--GAGAAAGCAATTATTCCCATAGCATATTTAAACCAGGTAAATATTTTTGCTTGCCATCTTGCAATTTGAAAGTTGGAAACGGCTTATGGTGAGTTA-AAGAGTTTGGAATGTGGGCCTATCT-----AGGAAG-----atagtaaagtcattaaaagca-aagtttctgaggtcaggcacctcagtttatcttctagctttgttgtttatgatctaggtggcattaggcagtttgcttaacctctt-gtgtctcagttGCTtcccagatatacactcgagag-ttg-aaaaataacattcctaatataattcctgttccttcatctcaccatgccacctatagacta-----------ttttttaaatgcttatg---gact------attttttaaatg--cctactgtgaagatttttgtgcattgcacaactttattgcattgtttttgtgtt---aaa--------tgttttt---cttacataattttaaaattatcacaatagt--tgttgtgacatgatttggtacttctttaattt---------ttaata-------aaagcctaa----------taaacgaaaatggcttgaacttcc---aggtcttggaaggtcctgatttaaactcatggatgcttaatttatctgtcatatgatc--------tattaatggctatcatatagta-ttttttggtgaagattaaataaaatag--gctgtgaggac-cagcacaacgtccgacatatagtgggctctcaataaatcacttctgtta---ttTTTCAGAAAGAAATAATTG---TTTTTTTAAGCTTTATCACTGGTCCTCTGATTAGCCAGCATAC--CCCCAAAGCTCAGGAAAGATATGGAAAGTGAAAATTTTATA-ACTTCTGGAAACCTCCTCCTTGTCCAGGACCTTCCTCT---GGGTAAAACAGAGGAAGATTTGTTTTCATGAACCTTTCTTTCTCTTTAACATTTAGAGATCATGGGCAGAGGAGCCTTA-----GAAGACAGAAATTTAATTCAAAG-ACTA---AATGCATAGAAATGG-AATATTGTAGTAGGTGATATATTGCT-ACAAA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16790210 1189 + 184069350 CTAATGCTCCTAAACTGCACAGCAGTTCTGTGCATTAGTCACA-TTTAAACCA-CCTGCAAATGCTCTACAGTAGATACACCTGTCAAAAAAAAAAAAAAAAAACTGAGGCAACCGAAACACTATCCCTAAAAAAAAAAAAAAAAAACAGAGGCAACCG----AAACAC----TATCCCTCACCTAGTTCTTAAACGGAGAC------------AAAAAATAGGAACCA--GAGAAAGCAATTATTCCCATAGCATATTTAAACCAGATAAATATTTCTGCTTGCCATCTTGCAGTTTGAAAGTTGGAAATGGCTTATGGTGAGTAA-AAGAGTTTGGAATGTGGGCCTATTT------GGAAG-----Gtagcaaagtcattaaaagca-aaatttctgaggtcaggcacctcagtttatcttctagctttgttatttaggatctaggtggcttcaggcagtttgcttaatctcct--tgtctcagttGCTtcccagagatacactcaagag-tcgaaaaaatagcattcctaatacaattcctgttccttcatcttaccatgccacctatagcaca-----------------------ctatg---gact------attttttaaatg--cctactgtgaagatttttgtgcattgcacaactttattgcattgtttttgtgtt---aaa--------tgttttt---cacatataattttaaaattatcacaatagt--tgttgtgacatgatttggtacttctttaattt---------ttaata-------aaagcctaa-----------aaatgaaaatggcttgaacttcc---gggtcttggaaggtcctgacttaaactcatggatgcttaattcatctgtcatatgagct----gtgtattaatggtaatcatatagta-tt-tttggtgacgattaaataaaacag--gatctgaggac-cagcacaatgcctgacatatagtgggctctcaataaatcaattctgtta---ttTTTCAGAAAGAAATAATTG--CTCTTTTTAAGCTTTATCATTGGTCCTCTGATTGACCAGCATAC--GCCCAAAGTTCAGGAAAGATATGGAAAGTGAAAATTTTATA-ACTTCTGGAAACCTCTTCAATGTCCAGGACCTTCCTCT---GGGTAAAACAGAGGAAGATTTG-TTTCATGAATCTTTCTTTCTCTTTAACATTTAGAGATCATAGGCTGAGAAGCCTTA-----GGAGACAGAAATTTAATTTAAAG-ACTA---AATGCATAAGAATGGAAATATTGTAGCAGGTGATATATTGCT-AAAAA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20840179 1154 + 189454096 ctaatgctcctaaactgcacAGCAGTTCTGTGCATTAGTCACA-TTTAAACCA-CCTGCAAATGCTCTACAGTAGATACACCTGTcaaaaaaaaacaaa-----------------------------------aaaaaacaaaaaaCAGAGGCAACCG----AAACAC----TATCCCTAACCTAGTTCTTAAACGGAGAC------------AAAAAATAGGAACCA--GAGAAAGCAATTATTCCCATAGCATATTTAAACCAGATAAATATTTCTGCTTGCCATCTTGCAGTTTGAAAGTTGGAAATGGCTTATGGTGAGTAA-AAGAGTTTGGAATGTGGGCCTATTT------GGAAG-----Gtagcaaagtcattaaaagca-aaatttctgaggtcaggcacctcagtttatcttctagctttgttatttaggatctaggtggcttcaggcagtttgcttaatctcct--tgtctcagttGCTtcccagagatacactcaagag-tcgaaaaaatagcattcctaatacaattcctgttccttcatcttaccatgccacctatagcaca-----------------------ctatg---gact------attttttaaatg--cctactgtgaagatttttgtgcattgcacaactttattgcattgtttttgtgtt---aaa--------tgttttt---cacatataattttaaaattatcacaatagt--tgttgtgacatgatttggtacttctttaattt---------ttaata-------aaagcctaa-----------aaatgaaaatggcttgaacttcc---gggtcttggaaggtcctgacttaaactcatggatgcttaattcatctgtcatatgagct----gtgtattaatggtaatcatatagta-tt-tttggtgacgattaaataaaacag--gatctgaggac-cagcacaatgcctgacatatagtgggctctcaataaatcaattctgtta---ttTTTCAGAAAGAAATAATTG--CTCTTTTTAAGCTTTATCATTGGTCCTCTGATTGACCAGCATAC--GCCCAAAGTTCAGGAAAGATATGGAAAGTGAAAATTTTATA-ACTTCTGGAAACCTCTTCAATGTCCAGGACCTTCCTCT---GGGTAAAACAGAGGAAGATTTG-TTTCATGAATCTTTCTTTCTCTTTAACATTTAGAGATCATAGGCTGAGAAGCCTTA-----GGAGACAGAAATTTAATTTAAAG-ACTA---AATGCATAAGAATGGAAATATTGTAGCAGGTGATATATTGCT-AAAAA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16430174 1138 + 178775436 CTAATGCTCCTAAACTGCACAGCAGTTCTGTGCATTAGTCACA-TTTAAACCA-CCTGCAAATGCTCTATAGTAGATACACCTGTCAAG----------------------------------------------------AAAAAACAGACGCAACCG----AAACAC----TATCCCTAACCTAGTTCTTAAACGGAGAC------------AAAAAATAGGAACCA--GAGAAAACAATTATTCCCATAGCATATTTAAACCAGATAAATATTTCTGCTTGCCATCTTGCAGTTTGAAAGTTGGAAGTGGCTTATGGTGAGTAA-AAGAGTTTGGAATGTGGGCCTATTT------GGAAG-----GTAGCGAAgttattaaaagca-aaatttctgAGGTCAGGCACCTCAGTTTATCGTCCAGCTTTGTTATTTAGGATCTAGGTGGCTTCAGGCAGTTTGCTTAATCTCCT-GTGTCCCAGTTGCTTCCCAGAGATACACTCAAGAG-TCGAAAAAATAGCATTTCTAATATAATTCCTGTTCCTTCATCTTACCATGCCACCTATAGCACA-----------------------CTAtg---cacc------attttttaaatg--cctactGTGAAGATTTTTGTGCATTGCACAACTTTATTGCATTGTTTTTGTGTT---AAA--------TGTTttt---cacatataattttaaaattatcacaatAGT--TGTTGTGACATGATTTGgtacttctttaattt---------ttaata-------aaagcctaa-----------aaatgaaaatggcttGAACTTCC---AGGTCTTGGAAGGTCCTGACTTAAACTCATGGATGCTTAATTCATTTGTCATATGATCT----GTGTATTAACGGTAATCATATAGTA-TT-TTTGgtgatgattaaataaaacaG--GATCTGAGGAC-CAGCACAATGTCTGACATATAATGGGCTCTCAATAAAtcaattctgtta---tttttcagaaagaaataattg--CTCTTTTTAAGCTTTATCATTGGTCCTCTGATTAGCCAGCGTAT--GCCCAAATTTCAGGAAAGATATGCAAAGTGAAAATTTTATA-ACTTCTGGAAACCTCCTCAATGTCCAGGACCTTCCTCT---GGGTAAAACAGAGGAAGATTTG-TTTCatgaatctttctttctctttaacatTTAGAGATCGTGGGCAGAGAAGCCTTA-----GGAGacagaaatttaatttaaag-acTA---AATGCATAGGAATGGAAATATTGTAGCAGGTGATATATTCCT-AAAAA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19914191 1144 - 48547382 CTAATGCTCCTAAACTGCACAGCAGTTCTGTGCATTAGTCACA-TTTAAACCA-CCTGCAAATGCTCTACAGTAGATACACCTGTCAAGAA--------------------------------------------------AAAAAACAGAGGCAACCG----AAACAC----TATCCCTAACCTAGTTCTTAAACGGAGAC-----------AAAAAAATAGGAACCA--GAGAAAGCAATTATTCCCATAGCATATTTAAACCAGATAAATATTTCTGCTTGCCATCTTGCAGTTTGAAAGTTGGAAATGGCTTATGGTGAGTAA-AAGAGTTTGGAATGTGGGCCTATTT------GGAAG-----Gtagcaaagtcattaaaagca-aaatttctgaggtcaggcacctcagtttatcttctagctttgttatttaggatctaggtggcttcaggcagtttgcttaatctcct-gtgtctcagttGCTtcccagagatacactcaagag-tcgaaaaaacagcattcctaatataattcctgttccttcatcttaccatgccacctatagcaca-----------------------ctatg---gact------attttttaaatg--cctactgtgaagatttttgtgcattgcacaactttattgcactgtttttgtgtt---aaa--------tgttttt---cacatataattttaaaattatcacaatagt--tgttgtgacatgatttggtacttctttaattt---------ttaata-------aaagcctaa-----------aaatgaaaatggcttgaacttcc---aggtcttggaaggtcctgacttaaactcatagatgcttaattcatctgtcatatgatct----gtgtattaatggtaatcatatagtattt-tttggtgatgattaaataaaatag--gatctgaggac-cagcacaatgcctgacatatagtgggctctcaataaatcaattctgttat--tTTTTCAGAAAGAAATAATTG--CTCTTTTTAAGCTTTATCATTGGTCCTCTGATTAGCCAGCATAC--GCCCAAAGTTCAGGAAAGATATGGAAAGTGAAAATTTTATA-ACTTCTGGAAACCTCCTCAATGTCCAGGACCTTCCTCT---GGGTAAAACAGAGGAAGATTTG-TTTCATGAATCTTTCTTTCTCTTTAACATTTAGAGATCGTGGGCAGAGAAGCCTTA-----GCAGACAGAAATTTAATTCAAAG-ACTA---AATGCATAGGAATGGAAATATTGTAGCAGGTGATACATTGCTAAAAAA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21273400 1151 - 190850796 ctaatgcttctaaactacacAGCAGTTCTGTGTACTACTCACA-TTTAAACCA-CCTGCAAATGCTCTTCAGTAGATATACCTGTCAGG----------------------------------------------------AAAAGGCAGAGGCAAACAAAAGAAACAC----TTTCCCTAACCTAGTTCTTAAACAAAGAC---------AAAAAAAAGTAGGAACCA--GAGAAAGCAATTATTCCCATAACATATTTACATCAGATAAATATTTCCACTTGTCATCTTGAAATTAGAAAGTTGGAAATGGCTTATGGTGAGTAA-AAGAGTTTGAAATGTGGGTCTATCT-----AGGAAG-----acagcaaagtcgtaaaaaac---attttctgaggtcagacacctgagtttatcttctagctttgttatttatgatctaggtggctttgggaaggttgcttaatcccct-gtgtctcagttgcttcCAagagatacactggagag-tcaaaaaaataacattcctaatataattcctgttcctttatctcaccaggctgcctatagcaca-----------ttacc-------ctacg---gact------attttttaaatg--catactgtgaagatttttgagcattgcataactatattgcattg-ttttgtgtt---aaa--------tgttttt---cacatataattttaaaattatcacaataat--tgttgtgatatgatttggtatttcttttattt---------ttaata-------aaagcctag----------agaatgaaaatgtcctgaacttcc---aggtcttggaaggtcctgacttaatctcatggatgcttaatttatctgtcatatgattt----ggctactaatggctatcatatagta-ttttttggaaaagatt-aataaaatag--aatgtgaggac-cagcacaatgcctgacacatagtgggctctcaacaaatcacttctgttg---ttTTTCAGAAAGAAATAATTG--CTCTTTTTAAGTTTTATCATTGGTCCTCTGATTAGCCAGCATACTACCCCAAAGTTCAGGAAAGGGATGGAAAGTGAAAATTTTATA-ACTTCTGGAGACATCCCCCATGTCCAATGCCTTCCTCT---GGGTAAAACAGAGG-AGATTTGTTATCATGGACCTTTCTTTCTCTTTAACATTTAGAGATCATGGGCAGAGAAGCCTTA-----GAAGACAGAAATTTAATTCAAAG-ACTA---AATGCATAGGAATGGAAATATTGTAGAAGGTGGTATACTGCT-ACAAA i calJac3.chr3 C 0 C 0 s mm10.chr5 49258163 1184 + 151834684 CTAGCCCTCCTGCCCTGCCGTATAGATATGGGCACTAATCA-A-CTTCAACCA-CCTGGA------CTTCAGCAGAAATTTCTATCaaattaaaaataaaaacaataat--------------------------------aataaaaaGAAGTAACCAAAAGGCATACTGCGTTTTGCACACCCAAAGTTTAATCAGAGAC------------AAATAATAGCAAGGACTGAGAAAGTATTTATTTCATTGAACTGTTTAAGCCTGATAAATAATTCCTCTTGTC-TTTTACAGTGTGAGAATTGGGAATGGCTCATGATAGGTTACCAAAGTTCAGAATATGGACCCAGCT-----AGGGAGGTAACatagcaaagccattaaaagca-aagactctggggtcagacacctcagtccatctgctgtctttgctatttactatctgtgtgacttcgggcaggttatgtaaacctTA-GTTCTTATGGCCCTGTCCAGGAAAACTCAGGAGAGACTGAAAAAATTATATTTTTA----AAGTCCTGTTACCTTATCTGACCATACCATCTATAGCATAAAAGTCATATTTTTCCTGCCCCCCAATACTTCATC------ATGTTTTAAATA--TGCAATGTGAA-ACATTTGTTCATTAAATAACTTTGTGGCATTGTTCATATATTTGCAAG--------TTTTCTTTTACAAATATAATTTCAGAAGCACCACCA------TTTTATGATCTTATTTGGTTCTTTTTCTTTTTTTTTTCTTGTTAACATGCCCTCACACTCTGA-----------AAAC---AATGGATATATTTTCTCAGAGAAATGGGAAACTCCTAATTTAAACTCACAGAT-----ATTTGCTTGTAGCATGAGTT----GGCTAATAATGATCACCATGTAGTC-TGCATTAGTTAAGATTACATAAGATA----ATCAAATAAT-CATCAATGCTCCTCACGAATAGTAGCAACTTAACCAGTCACTGATGCTA---TAGTTCAGAATAAAACTGTG----TTCTTGCACATATTACCATCTGTTTCC---TTAGTTGATGGAC--CTGTACGTTTCATAAAATGGGTAGAAGGT-AAAACTTTCTA----TCTCTAGATATTCTCCCTGCCCATGGCCTCTCTAGTAAGGATGGGGTGGGGGTAG-TTAGTGCTCATTCACCTTTATTTTCA--------TTAAAGATAATGACAAGAGAAAACATAACAGTGGACACTGGGATGAACACCGAAGCGCTC---GATGCACAGGAATAGAAG---TGCAGAGAGTGTTATATTGC------- i mm10.chr5 I 31 C 0 s canFam3.chr3 3848207 1177 - 91889043 ctGGTGCTTCTGAAGTGCACGATGGTTCTGTGCACCAGTTACA-ACTAAACTACCCTATGAACGCTTTTCAGCAGGTGTATGTGTCAA-----------------------------------------------------TGAAAACAGAAGCAACCAAAAGAAATAC------TCCATAGCCTAGTCCTTAAACAG-GAC---------TAAATAAATTAGGAAACT--GAGAAAGTATTTATTATGAAAATACATTTAAGCCAAATAAATATTTCTATTTATCGTT-----ATTTGCAAGCTGAAAATGGCTGATGGTAAG----AAAAATTTGG-ATGTGGGTCTAGCTGCCTAGGGAAG--CATCtagcagagtcattaaaagcattaaactctagggtcagacacctcagctcatcgtttagcttagttatttactagctatgtggccacaggcaggttactaaattcccttgtgtatcagttgcttcCCAGAGACACATATAAGAG-ACTAAAAAACAACATTCATAA---GTTCTCTGCTCCTTTATCTAACCGTGTCATCTATAACACA-----------------------CTAGG---GATTGATTTCATTTTTGGATTTACCATACTGTGAAGA----TGTGCATT---CGATTTTATTGCATTGTTCCTATGTT---AAAATTTTTACTTTGTTT---CACATATAATTTTAAACTCGCCataattttaattttatgaatttatttagta-ttatttgattt---------ttaatattCT---GAAGCCTGAAGGAAAAAAAAAAAAAGACACGCCTTGGCACTCC---Agaccttggaacgtcctgacttaaattcattgatgtttcatttctttat-atataatatgacgggctattaatgcacacca--ctgta-ctttttggtaaaggttaaataaaatagcatatataaagacgcagcatggtgcctgacatattgtggaccctcaagcaattattgctgttatcattTTACAGAAAGGAAAAAATCATTCTTTTTTAAGATGTACTCCTGGTCCTCTCATCATTGAGCATATATTCCCCAAGTTCAGGAAAGGGACGGTAAGTGAATATTTTATAAACCTCCGTAGAAGTCTTCCATGTCCAGAGCCT--CTCT---GGATTAGAT---GGAAGATTTGTTCTCATTAACTTTTTTTTTTTCTTCAATAGTAGGGATAGTGGGCAGAGAAGCCACT-----AAAGACAGAACTAGGCATTAAAG-ATGACACCATGTATGGGACTGAGAATGCCACA-CAAGTGGTACCCAGCT-ATAAA i canFam3.chr3 C 0 C 0 a score=35011.000000 s hg38.chr4_KI270790v1_alt 151260 10 + 220246 ACCTAACTTT s panTro4.chr4 21539358 10 + 193495092 AACTAACTTT i panTro4.chr4 I 1757 C 0 s ponAbe2.chr4 21715078 10 + 198332218 ACCTAACTTT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20326259 10 - 85365473 ACCTAACTTT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16791399 10 + 184069350 ACCTAACTTT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20841333 10 + 189454096 ACCTAACTTT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16431312 10 + 178775436 ACCTAACTCT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19915335 10 - 48547382 ACCTAACTTT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21274551 10 - 190850796 ACCTAACTTT i calJac3.chr3 C 0 I 286 s canFam3.chr3 3849384 9 - 91889043 -CCTAGCTCC i canFam3.chr3 C 0 C 0 e mm10.chr5 49259347 0 + 151834684 C a score=1799584.000000 s hg38.chr4_KI270790v1_alt 151270 550 + 220246 AAAAAGTAATTGCCAACTTAAAAAGAAGTCAGGAAAAGCTGAGGAATGGTTACTACTGTCTTTTCTATCACAGGGCACCCCC-CCCCCC---------TCATTTTATACA-------TGTATTTTCTTG----------TAAAAGTTAATCAACACAAATGTAAAAACTAAAATAAGTCAAGGC----TCTAA------GA---AG--CACAGATAGGAACATTTCAAACAAAG---TGT--ACCTGACTAGTAGGCACCCAGCCAGCTGGC----CTTTCCTACAAAGG-AATT--TTTT----------AGGAGTA-TTGTGTAGTGCTGTCTG-CAATGAACAAGATAGCATATCATAAGGGCG-TATCAGGCATTTGGCAAAACTTGTGCTGGGGC-CC-AACTATGCTGGATACAGAATTctctctgttatccaggtctt-tatttcccacttgcaggaccatctgcagccaactccctatatcccctgaagccttcatccttcctctgaccatacatggcgcccc-tttggccttttgtcattttcaattattgtgaacccaggaaggtggaaactaactttaatatctgctgtaagaaaacataacaagaa-ata s panTro4.chr4 21539368 549 + 193495092 GAAAAGCAATTGCCAACTTAAAAAGAAGTCAGGAAAAGCTGAGGAATGGTTACTACTGTCTTTTCTATCACAGGGCACCCCC-CCCCC----------TCATTTTATACA-------TGTATTTACCCG----------AAAAAGTTAATCAACACAAATGTAAAAACTAAAATAAGTCAAGGC----TCTAA------GA---AG--CACAGATAGGAACATTTCAAACAAAG---TGT--ACCTGACTAGTAGGCACCCAGCCAGCTGGC----CTTTCCTACAAAGG-AATT--TTTT----------AGGAGTA-TTGTGTAGTGCTGTCTG-CAATGAACAAGATAGCATATCATAAGGGCG-TATCAGGCATTTGGCAAAACTTGTGCTGGGGC-CC-AACTATGCTGGACACAGAATTctctctgttatccaggtctt-tatttcccacttgcaggaccatctgcagccaactccctatatcccctgaagccttcatccttcctctgaccatacatggcgtccc-tttggccttttgtcattttcaattattgtgaacccaggaaggtggaaactaactttaatatctgctgtaataaaacataacaagaa-ata i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21715088 552 + 198332218 GAAATGTAATTGCCAACTTAAAAAGAAGTCAGGAAAAGCTGAGGAATGGTTACTACTGTCTTTTCTATCACAGGACAACCCC-CCCCCC---------CCATTTTATACA-------TGTATTTTTTTG----------TAAAAGTTAATCAACACAAATGTAAACACTAAAATAAGTCAAGGC----TCTAA------GA---AG--CACATATAGGAACATGTCAAACAAAG---TAT--ACCTGACTAATAGGCACCCAGCCAGTTGGC----CTTTCCTACAAAGG-AATT--CTTT----------AGGAGCA-TTGTGTAGCACTGTCTG-CAATGAACAAGACGGCATATCATAAGGGCATTATCAGGCATTTGGCAAAACTTGTGCTGGGGCTCC-AACTGTGCTGGACACAGAATTCTCTCTGTTATCCAGGTCTT-TATTTCCCACTTACAGGACCATGTGCAGCCAACGCCCTATATCCCCTGAAGCCTTCCTCCTTCCTCTGACCATACATGGCATCCC-TTTGGCCTTTTGTCATTTTCAATTATTGTGAACCTAGGAAGGTGGAAACTAATTTTAATATCTGCTGTAATAAAACATAACAAGAA-ATA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20326269 547 - 85365473 GAAATGTCATTGTCAACTTAAAAAGAAGTCAGGAAAAGCTGAGGAATGGTTACTACTGTCTTTTCTATCACAGGGCATCCCC-CC-------------TCATTTTATACA-------TGTATTTTTTTG----------TAAAAGTTAATCAGCGCAAATGTAAAAACTAAAATAAGTCAAAGC----TCTAA------GA---AG--CACAGATAGGAACATTTCAAATGAAG---TAT--ACCTGACTAATAGTCACCCAGCCTGTTGGC----CTTTCCTACAAAGG-AATT--TTTT----------AGGAGCA-TTGTGTAGTGCTGTCTG-CAATGAACAAGATGGCATATCATAAGGGCG-TATCAGGCATTTGACAAAACTTGTGCTGGGGCTCC-AACTATGCTGGATACAGAATTctctctgttatccaggtctt-tatttcccacttgcaggaccatgtgcagccaactccctatatcccctgagggcttcatccttcctctgatcatacgtggcgtccc-tttggccttttgtcattttcaattattgtgaacctaggaaggtggaaactaattttaatatctgctgtaataaaatataacaagaa-ata i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16791409 567 + 184069350 GAA---TAATTGCCGACTTAAAAAGAAGTCAGGAAAAGCTGAGGAATGGTTACTACTGTCTTTTCTATCACAGGGCACCCCCTCCCCCTCCGCCCCCTTCCTTTTATACA-------TCTTTTTTTTTTTTTTTTTTTGTAAAAGTTAATCAACACAAATGT-AAAGCTAAAATAAGTCAAGGC----TCTAA------GA---AG--CACAGGTAGGAACATTTCAAACCAAG---TAC--ACCTGACTAGTAGGCACCCAGCCAGTTGGC----CTTTCC-AAAAAGG-AATT--TTTT----------AGGAGCA-TTGTGTCGTACTGTCAGAAAACGAACAAGATGGCATATCATAAGGGCG-TATCAGGCATTTGGCAAAACTTGTGCTGGGGCTCC-AACTATGCTGGATACAGAATTctctctgttatccaggtctt-tatttcccacttgcaggagcatctgcacccaactcactatatcccctgaacccttcatccttcctctgaccatacatggcgtccc-tttggccttttgtcattttcaattattgtaaacctaggagggtggaaacaaattttaatatctgcggtaataaaacataacaagaa-ata i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20841343 563 + 189454096 GAA---TAATTGCCGACTTAAAAAGAAGTCAGGAAAAGCTGAGGAATGGTTACTACTGTCTTTTCTATCACAGGGCACCCCC-CCCACTCCGCCCCCTTCATTTTATACA-------TCttttttttttttttttt---tAAAAGTTAATCAACACAAATGT-AAAGCTAAAATAAGTCAAGGC----TCTAA------GA---AG--CACAGGTAGGAACATTTCAAACCAAG---TAC--ACCTGACTAGTAGGCACCCAGCCAGTTGGC----CTTTCC-AAAAAGG-AATT--TTTT----------AGGAGCA-TTGTGTCGTACTGTCAGAAAACGAACAAGATGGCATATCATAAGGGCG-TATCAGGCATTTGGCAAAACTTGTGCTGGGGCTCC-AACTATGCTGGATACAGAATTctctctgttatccaggtctt-tatttcccacttgcaggagcatctgcagccaactcactatatcccctgaacccttcatccttcctctgaccatacatggcgtccc-tttggccttttgtcattttcaattattgtaaacctaggagggtggaaactaattttaatatctgcggtaataaaacataacaagaa-ata i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16431322 562 + 178775436 GAAATGTAGTTGCCGACTTaaaaagaagtcaggaaaagCTGAGGAATGGTTACTACTGTCTTTTCTATCACAGGgcaccccc-cccaccccgcccccttcattttataca-------ttttttttttttttg-------taaaagttaATCAACacaaatgtaaaaactaaaataagtCAAGGC----TCTAA------GA---AG--CACAGGTAGGAACATTTCAAACCAAG---TAC--ACCTGACTAGTAGGCACCCAGCCAGTTGGC----CTTTCC-AAAAAGG-AATT--TTTT----------AGGAGCA-TTGTGTAGTACTGTCAG-AAATGAACAAGATGGCATATCATAAGGGCG-TATCAGGCATTTGGCAAAACTTGTGCTGGGGCTCC-AACTATGCTGGATACAGAATTCTCTCTGCTATCCAGGTCTT-TATTTCCCACTTGCAGGACCATCTGCAGCCAACTCACTATATCCCCTGAACCCTTCATCCTTCCTCTGACCATACATGGCGTCCC-TTTGGCCTTTTGTCATTTTCAATTATTGTAAACCTAGGAGGGTGGAAACTAATTTTAATATCTGCTgtaataaaacataacaagaa-ata i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19915345 560 - 48547382 GAA---TAATTGCCGACTTAAAAAGAAGTCAGGAAAAGCTGAGGAATGGTTACTACTGTCTTTTCTATCACAGGGCACCCC--CCCACCCCACCCCCTTCATTTTATACA-------TTTTTTTTTTTTTTTTG-----TAAAAGTTAATCAACACAAATGTAAAAACTAAAATAAGTCAAGGC----TGTAA------GA---AG--CACAGGTAGGAACATTTCAAACAAAG---TAT--ACCTGACTAGTAGGCACCCAGCCAGTTGGC----CTTTCC-AAAAAGG-AATT--TTTT----------AGGAGCA-TTGTGTAGTACTGTCAGAAAATGAACAAGATGGCATATCATAAGGGCG-TATCAGACATTAGGCAAAACTTGTGCTGGGGCTCC-AACTATGCTGGATACAGAATTctctctgttatccagctctt-tatttcccacttgcaggaccatctgcagccaactcactatatcccctgaagccttcatccttcctctgaccatacatggcgt-cc-tttggccttttgtcattttcaatttttgcaaacctaggagggtggaaactaattttaatatctgctgtaataaaacataacaagaa-ata i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21274847 547 - 190850796 AAAAAGTAATTGTCAACTTAAAAAGAAGTCAGGAAAAGCTGAGGAATGATTACTACTGTCTTTTCTATCACACGGCGCACCC-TC-------------CTATTTTATACC-------TGTATTTTTTG-----------TAAAAGTTAATCAACACAGATGTAAAAAATAAAATAAGCCAAGGC----TCTAA------GAAGCAG--CACAGATAGGAGCATTTCAAACAAAG---TAT--ACCTGACTAGTAGGCACCCAGCCAGATGAC----CTTTCTTACAAAGGAAACT--CTTT----------AGGGACA-TTGTGTAGCACCATCTG-CAGTGAGCAAGATGGCAAATCGTAAAGGCA-TATTAGGCATTTGGCAAAACTTGTGCTGGGGCTCC-AACTATGCTGGATACAGAAGTCTCTCTCTTATCAAGGTCTT-TATTTCCCACTTGCAGGATCATATGAAGCCAATTCCCTACATCCCTTGAAGGCTTCATCCTCCCTCTGACCACACATGGCGTCCC-TTTGGCCTTTTGTCATTTTCAATTATTATGAGCCTAGGAGGATGGAAACT-ATTTTAATATCTGCTGtaataaaacata--aaaaa-ata i calJac3.chr3 I 286 C 0 s mm10.chr5 49259347 556 + 151834684 -----ATGATGGTAAGTTTGGACAGGGGGTAGGGAAAGCTTAGGGGCAGTCACTGCTG-----CCCATCATGATG--------CCCATT---------TAGTGAAACCCA-------TGTGCATTCCCTG---------TCAAAGCTTAGTGACACGAATGCCAAAAAT-AAATAAGTAAGAGTTGTGTCTAAAAGAGGGA---GG--CAGATACAGAAA---TGCAAAGCAAGCTTTCC--ACATGACTAAAGGGCACCCGGCCAGATGGCGCTTCATTCCCGCAAAGG-CATT--TCTTTGCAGGGAGGATGGGCAGTTGTTGAGTGTTTTATG-CTATGAACAAGAATGTCATTTAGGAAAACA-TACCAGCCAAATAGCAAACTTTGAACAAGTTCTCCAAACCATGCCAGAACCAGAAA--ACCTTGTTATCTAGGTTTT-CCCTGCCTACCAGGAGGGTCTTTGAAAGCCACGTCCTTGGAGCAAGGGAAGGCTCCACCCTTCCCCTG-TAACACATGATGGTCC-TTTGGCCTTTGGTTATTTTCACGTACAATGA--TGAAAATGTGGGAAACTAGTTTCAACATCAGATGACTTAAAACACAGTAAGAATGGA i mm10.chr5 C 0 C 0 s canFam3.chr3 3849393 548 - 91889043 -TAAACCAACAGCAGACATGGAAAGAAGCCAGGAAAAGCTGAGTAATGGCCACTATTCTCTTCACTG----AAAGCCCCCTG-CCCCC----------ATATTTTAAATAAACATACCCTGCTTCTTTG----------TAGAAGCCAATCAACACGAATGCCAAAA---ACCTAAGTCATGCC----TCTAA------GA---AGACTGCAGATGGAAA--GTTCAAACGGGG---TATCCGCATGACAAGTAGGCACATAGCCGGATGGC----CCTGCGTACAGTGG-AATTTCTTTT----------AGGAGCA-TTCCACAGTGCTGTCTG-CAGTGGGCGAGAAGGTAAATCATAAAGGCA-TCCCAGCCATTTTGCAAAACTCACACCGATGCTCCAAACGATGCTGGAAGCAGAAGACCCTC-ATTACCCAGGTCTTCCATTTCCTACTTGCAGGCTCAGCTGCAGCCAACTGCATACGTCCCTGGAAATCTTCATTCTTATGCTGACAACACATGAAGTCCCTTTTGGTCTTTTGTCATTTTGAATTATTGTGGATGGAGAAAGGTAAAAACTAATTTTAATAT-------AGTAAAACATAGGAAGAG-ATA i canFam3.chr3 C 0 I 245 a score=3965690.000000 s hg38.chr4_KI270790v1_alt 151820 1015 + 220246 taaatctatt----aattt----c-aaaaaatcagtgattaaagccaaTTTATTTTCCTTGGCTGACATTTTCCTTCAAGGATTTCT------------------CTGTTGCTCCTGCCTATAGAAGAATTTTAGTTTCCCTTCAAACATTCTAC--------TGGTGCCAAGTTAAGAAGTTACC--TGAAAGAGAATGCATAAAAATCAAGTTGAAATGTCTCAGCT------TTGTTCCTTTTTAAAAGATGAAGACATAGTGCA-TTACTTAGGTAACACTGCTTCT--C--TGATTCAGTGGGACAGCTTGATGAGAAGATATATGATACTTTGTACATAACCGTTGTTTTCTTTT-------------T-GTCATC-AA-TAAGTTGAATCTTGACTTCATTAGAGCCTATCCAAATGCATCATTGCAACGGATCATCTCCCCACATTACTGTATCCATTATGTGTAGAGCAAGTTCATCCAATTTCCCCAACAG---TTTATGAGAGAAAAGAACAAATTAAAAAGGCCTACTCTCTTACATATCAGGATGATTTATGCCAGTGTGTCAGCACACGTATTTATATTTTCTCTGGCCCTTCTATTTGCTTAATATATGAAGGAGGAAAGTTAATATTCTTCTGAAAAACTCTGTTCTGGTCTCTACTGATTTGAACATAAAGTTCAAAAGGAGATGATATCTTATAAAGACTCTAAGCTTACTGCATTAAATTAACAATACTAATCTCTGTGTTTCACATGGTACTTATGCAGAGCAGCTTTACAGACATTAAATGAAAAAAAAATGCCAAAGCTGTCTTTTATATGAAAAGCAAGAATAGAACCTTCTCTACATGTCCCTTCAAGTC--TTTTTAAAAGATACGCTTCAGCTAGTGGTGGTGAATAAGGGGGAGGAAAGAGAGCCACATTGAATGGGTTCTTCTCCTGCTTACCTTTCTTCAACTTCAGACCTTTCTAAATCCCACTGACCTGGAGGGAATAAACAGagaagaaa-----gaagcatagcaagaag-tagaaggagaaATAGACAACCATTCAAAAATG-TTTTA-AAAAATCAT------ s panTro4.chr4 21539917 1016 + 193495092 taaatctatt----aatgt----c-aaaaaatcagtgattaaagccaaTTTATTTTCCTTGGCTGACATTTTCCTTCAAGGATTTCT------------------CTGTTGCTCCTGCCTATAGAAGAATTTTAGTTTCCTTTCAAACATTCTAC--------TGGTGCCAAGTTAAGAAGTTACC--TGAAAGAGAATGTATAAAAATCAAGTTGAAATGTCTCAGCT------TTGTTCCTTTTTAAAAGATGAAGACATAGTGCA-TTACTTAGGTAACACTGCTTCT--C--TGATTCAGTGGGACAGCTTAATGAGAAGATATATGATACTTTGTACATAACCATTGTTTTCTTTT-------------TTGTCATC-AA-TAAGTTGAATCTTGACTTCATTAGAGCCTATCCAAATGCATCATTGCAACGGATCATCTCCCCACATTACTGTATCCATTATGTGTAGAGCAAGTTCATCCAATTTCCCCAACAG---TTTATGAGAGAAAAGAACAAATTAAAAAGGCCTACTCTCTTACATATCAGGATGATTTATGCCAGTGTGTCAGCACACATATTTATATTTTCTCTGGCCCTTCTATTTGCTTAATATATGAAGGAGGAAAGTTAATATTCTTCTGAAAAACTCTGTTCTGGTCTCTACTGATTTGAACATAAAGTTCAAAAGGAGATGATATCTTATAAAGACTCTAAGCTTACTGCATTAAATTAACAATACTAATCTCTGTGTTTCACATGGTACTTATGCAGAGCAGCTTTATAGACATTAAATGAAAAAAAAATGCCAAAGCTGTCTTTTATATGAAAAGCAAGAATAGAACCTTCTCTACATGTCCCTTCAAGTC--TTTTTAAAAGATACGCTTCAGCTAGTGGTGGTGAACAAGGGGGAGGAAAGAGAGCCACATTGAATGGGTTCTTCTCCTGCTTACCTTTCTTCAACTTCAGACCTTTCTAAATCCCACTGACCTGGAGGGAATAAACAGAGAAGAAA-----GAAGCATAGCAAGAAG-TAGAAGGAGAAATAGACAACCATTCAAAAATG-TTTAA-AAAAATCAT------ i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21715640 1014 + 198332218 TAAATGTATT----AATGT----CAAAAAAATCAGTTATTAGAGCCAATTTATTTTCCTTGGCTGACATTTTCCTGCAAAGATTTCT------------------CTGTTGCTTCTGCCTATAGAAGAATTTTAGTTTCCTTTCAAACATTCTAC--------TGGTGCCAAGTTAAGAAGTTACC--TGAAAGAGAATGCATAAAAATCAAGTTGAAATGTCTCAGCT------TTGTGTCTTTTTAAAAGATGAAAACATAATGCA-TTACTTAGGTAACACTGCTTCT--C--TGATTCAGTGGGACAGCTTGATGAGAGGATATATGATACTTTGTACATAACCATTGTTTTCTTTT-------------T-GTCATC-AA-TAAGTTGAATCTTTACTTCATTAGAGCCTACCCAAATGCATCATTGCAATGGATCATCTCCCCACGTTACTGTATCCATTATGTGTAGAGCAAGTTCATCCAATTTCCCCAACAT---TTTATGAGAGAAAAGAACAAATTAAAAAGGCCTACTCTCTTACATATCAGGATGATTTATGCCAGTGTGTGAGCACACATATTTATATTTTCTCTGGCCCTTCTATTTGCTTAATATATGAAGGAGGAAAGTTAATATTCTTCTGAAAAACTCTGTTCTGGTCTCTACTGATTTGAACATAAAGTTCAAAAGGAGATGATATCTTATAAAGACTCTAAGCTTACTGCATTAAATTAACAATACTAATCTCTGTGTTTCACATGGTACTTATGCAGAGCAGCTTTATAGACATTAAATG--AAAAAAATGCCAAAGCAGTCTTTTATATGAAAAGAAAGAATAGAAACTTCTCTACATGTCCCTTCAAGTC--TTTTTAAAGGATATGGTTCAGCTAGTGGTGGTGGATAAGGGGGAGGAAAGAGAGTCACATTGAATGGGTTCTTCTCCTGTTTACCTTTCTTCAACTTCAGACCTTTCTAAATCCCACTGACCTGGAGGGAATAAACAGAGAAAAAA-----GAAGCATAGCAAGAAG-TAGAAGGAGAAATAGACAACCATTCAAAAATG-TTTTA-AAAAATCAT------ i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20326816 1012 - 85365473 taaatgtatt----aatgt----caaaaaaatcagtgattaaagccaaTTTATTTTCCTTGGCTGACATTTTCCTGCAAGGATTTCT------------------CTGCTGCTCCTGCCTATAGAAGAATTTTAGTTTCCTTTCAAACATTCTAC--------TGGTGCCAAGTTAAGAAGTTACC--TGAAAGAGAATGCATAAAAATCAAGTTGAAATGTCTCAGCT------TTGTTCCTTTTTAAAAGATGAAAACATAATGCA-TTACTTAGGTAACACTGCTTCT--C--TGATTCAGTGGGACAGCTTGATGAGAAGATATATGATACTTTGTACATAACCATTGTTTTTTTT----------------GTCATC-AA-TAAGTTGAATCTTGACTTCATTAGAGCCTATCCAAATGCATCATTGCAATGGATCATCTCCCCACATTACTGTATCCATTATGTGTAGAGCAAGTTCATCCAATTTCCCCAACAG---TTTATGAGAGAAAAGAACAAATTAAAAAGGCCTACTCTCTTACATATCAGGATGATTTATGCCAGTGTGTGAGCACATGTATTTATATTTTCTCTGGCCCTTCTATTTGCTTAATATATGAGGGAGGAAAGTTAATATTCTTCCGAAAAACTCTGTTCTGGTCTCTACTGATTTGAATATAAAGTTCAAAAGGAGATGATATCTTATAAAGACTCTAAGCTTACTGCATTAAATTAACAATACTAATCTCTGTGTTTCACATGGTACTTATGCAGAGCAGCTTTATAGACATTAAATG--AAAAAAATGCCAAAGCTGTCTTTTATATGAAAAGCAAGAATAGAAACTTCTCTACATGTCCCTTCAAGTC--TTTTTAAAAGATATGCTTCAGCTAGTGGCGGTGAATAAAGGGGAGGAAAGAGAGCCACACTGAATGGGTTCTTCTCCTGCTTACCTTTCTTCAACTTCAGACCTTTCTAAATCCCACTGACCTGGAAGGAATAAACAGGGAAGAAA-----GAAGCATGGCAAGAAG-TAGAAGGAGAAATAGGCAACCATTCAAAAATG-TTTTA-AAAAATCAT------ i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16791976 1014 + 184069350 taaatgtatt----aatat----aaaaaaaatcagtgactaaagccaagtTATTTTCCTTGGCTGACATTTTCCTGCAAGGATTTCT------------------CTGTTGCTCCTGCCTATATAAGAATTTTAGTTTCCTTTCAAACATTCTAC--------TGGTGCCAAGTTAAGAAGTTACC--TGAAAGAGAATGCATAAAAATCAAGTGGAAATGTCTCAGCT------TTGTTCCTTTTTAAAAGATGAAAACATAATGCA-TTACGTAAGTAACACTGCATCT--C--TCATTCAGTGGGACAGCTTGATGAGAAGATATATGATACTTTATACATAACCATTGTTTTCTTTT-------------T-GTCATC-AA-TAAGTTGAGTCTTTACTTCATTAGAGCCTACCCAAATGCATCATTGCAACGGATCATCTCCCCACATTACTGTATCCATTATGTGTACAGCAAGTTCATTCGATTTCCCCAACAG---TTTATGAGAGAAAAGAACAAATTAAAAATACCTACTCTCTTACATATCAGGATGATTTATGCCAGTGTATGAGCCCACATATTTCTATTTTCCCTGGCCCTTCTATTTGCTTAATTTATGAAGTAGGAAAGTTAATATTCTTCTGAAAAACTCTGTTCTGGTCTCTACTGATTTGAACATAAAGTTCAAAAGGAGATGATATCTTATAAAGACTCTAAGCTTACTGCATTAAATTAACAACACTAATCTCTGTGTTTCACATGGTACTTATGCAGAGAAGCTTTACAGACATTAAATG--AAAAAAATGCCAAAGCTGTCCTTTATAAGAAAAGCAAGAATAGAAACTTCTCTACATGTCCCTTCAAGTC--TTTTTAAAAGATATGCTTCAGTTAGTGGTGGTGAATAAGGGGGAGGAAAGAGAGTCACATTGAATAGGTTCTTCTTCTGCTTACCTTTCTTCAACTTCAGACCTTTCTAAACCCCACTGACTTGCAGGGAATAAACAGAGAAGAAA-----GAAGCATATCAAGAAG-TAAAAGGAGAAATGGACAACCATTCAAAAATG-TTTAA-AAAAGTCAT------ i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20841906 1010 + 189454096 taaatgtatt----aatat----aaaaaaaatcaGTGACTAAAGCCAAGTTATTTTCCTTGGCTGACATTTTCCTGCAAGGATTTCT------------------CTGTTGCTCCTGCCTATATAAGAATTTTAGTTTCCTTTCAAACATTCTAC--------TGGTGCCAAGTTAAGAAGTTACC--TGAAAGAGAATGCATAAAAATCAAGTGGAAATGTCTCAGCT------TTGTTCCTTTTTAAAAGATGAAAACATAATGCA-TTAC----GTAACACTGCATCT--C--TCATTCAGTGGGACAGCTTGATGAGAAGATATATGATACTTTATACATAACCATTGTTTTCTTTT-------------T-GTCATC-AA-TAAGTTGAGTCTTTACTTCATTAGAGCCTACCCAAATGCATCATTGCAACGGATCATCTCCCCACATTACTGTATCCATTATGTGTACAGCAAGTTCATTCGATTTCCCCAACAG---TTTATGAGAGAAAAGAACAAATTAAAAATACCTACTCTCTTACATATCAGGATGATTTATGCCAGTGTATGAGCCCACGTATTTATATTTTCCCTGGCCCTTCTATTTGCTTAATTTATGAAGTAGGAAAGTTAATATTCTTCTGAAAAACTCTGTTCTGGTCTCTACTGATTTGAACATAAAGTTCAAAAGGAGATGATATCTTATAAAGACTCTAAGCTTACTGCATTAAATTAACAACACTAATCTCTGTGTTTCACATGGTACTTATGCAGAGAAGCTTTACAGACATTAAATG--AAAAAAATGCCAAAGCTGTCCTTTATAAGAAAAGCAAGAATAGAAACTTCTCTACATGTCCCTTCAAGTC--TTTTTAAAAGATATGCTTCAGTTAGTGGTGGTGAATAAGGGGGAGAAAAGAGAGTCACATTGAATAGGTTCTTCTTCTGCTTACCTTTCTTCAACTTCAGACCTTTCTAAACCCCACTGACTTGCAGGGAATAAACAGagaagaaa-----gaagcatatcaagaag-tagaaggagaaATGGACAACCATTCAAAAATG-TTTAA-AAAAGTCAT------ i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16431884 1018 + 178775436 taaatgtatt----aatgtaaaaaaaaaaaatcagtgactaaagccaatttattttccttggcTGACATTTTCCTGCAAGGATTTCT------------------CTGTTGCTCCTGCCTATATAAGAATTTTAGTTTCCTTTCAAACATTCTAC--------TGGTGCCAAGTTAGGAAGTTACC--TGAAAGAGAATGCATAAAAATCAAGTGGAAATGTctcagct------ttgttcctttttaaaagatgaaaacataaTGCA-TTACGTAAGTAACACTGCATCT--C--TCATTCAGTGGGACAGCTTGATGAAAAGATATATGATACTTTATACATaaccattgttttctttt-------------t-gtcatc-aA-TAAGTTGAATCTTTACTTCATTAGAGCCTACCCAAATGCATCATTGCAACGGATCATCTCCCCACATTACTGTATCCATTATGTGTACAGCAAGTTCATTCGATTTCCCCAACAG---TTTAtgagagaaaagaacaaattaaaaatacctaCTCTCTTACATATCAGGATAATTTATGCCAGCGTATGAGCccatgtatttatattttccctGGCCCTTCTATTTGCTTAATTTATGAAGTAGGAAAGTTAATATTCTTCTGAAAAACTCTGTTCTGGTCTCTACTGATTTGAACATAAAGTTCAAAAGGAGATGATATCTTATAAAGACTCTAAGCTTACTGCATTAAATTAACAACACTAATCTCTGTGTTTCACGTGGTACTTATGCAGAGAAGCTTTACagacattaaatg--aaaaaaatgccaaaGCTGTCCTTTATAAGAAAAGCAAGAATAGAAACTTCTCTACATGTCCCTTCAagtc--tttttaaaagatatgctTCAGTTAGTGGTGGTGAATAAGGGGGAGGAAAGAGAGTCACATTGAATGGGTTCTTCTTCTGCTTACCTTTCTTCAACTTCAGACCTTTCTAAACCCCACTGACTTGCAAGGAgtaaacagagaagaaa-----gaagcatATCAAGAAG-TAGAAGGAGAAATGGACAAccattcaaaaatg-tttaa-aaaaatcat------ i papAnu2.chr5 C 0 I 211 s chlSab2.chr27 19915905 1016 - 48547382 taaatgtatt----aatgt---aaaaaaaAATCAGTGACTAAAGCCAATTTATTTTCCTTGGCTGACATTTTCCTGCAAGGATTTCT------------------CTGTTGCTCCTGCCTATATAAGAATTTTAGTTTCCTTTCAAACATTCTAC--------TGGTGCCAAGTTAAGAAGTTACC--TGAAAGAGAATGCATAAAAATCAAGTGGAAATGTCTCAGCT------TTGTTCCTTTTTAAAAGATGAAAACATAATGCA-TTACGTAAGTAACACTGCATCT--C--TTATTCAGTAGGACAGCTTGATGAAAAGATATATGATACTTTATACATAACCATTGTTTTCTTTT-------------T-GTCATC-AA-TAAGTTGAATCTTTACTTCATTCGAGCCTACCCAAATGCATCATTGCAACGGATCGTCTCCCCACATTACTGTATCCATTATGTGTACAGCAAGTTCATTCAATTTCCCCAACAG---TTTATGAGAGAAAAGAACAAATTAAAAATACCTACTCTCTTACATTTCAGGATGATTTATGCCAGTGTATGAGCCCACGTATTTATATTTTCCCTGGCCCTTCTATTTGCTTAATATATGAAGTAGGAAAGTTAATATTCTTCTGAAAAACTCTGTTCTGGTCTCTACTGATTTGAACATAAAGTTCAAAAGGAGATGATATCTTATAAAGACTCTAAGCTTACTGCATTAAATTAACAACACTAATCTCTGTGTTTCACATGGTACTTATGCAGAGAAGCTTTACAGACATTAAATG--AAAAAAATGCCAAAGCTGTCTTTTATAAGAAAAGCAAGAATAGAAACTTCTCTACATGTCCCTTCAAGTC--TTTTTAAAAGATATGCTTCAGTTAGTGGTGGTGAATAAGGGGGAGAAAAGAGAGTCACATTGAATGGGTTCTTCTTCTGCTTACCTTTCTTTAACTTCAGACCTTTCTAAACCCCACTGACTTGCAGGGAATAAACAGagaagaaa-----gaagcatatcaagaag-tagaaggagaaATGGACAACCATTCAAAAATGTTTTAA-AAAAATCAT------ i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21275394 991 - 190850796 taaatgtatt----aattt---tcaaaaaaatCAGTGACTAAAGCCAATTTCTTTTCTTTGGC-------------CAAGGATTTCT------------------CTGCTGCTCCTGCCTATAGAAGAATTTTAG-ATCCTTTCAAACATTCTAC--------TGGTGCCAAGTTAAGAAGTTACC--TGAAAGAGAATGCATAAAAATAAAGTTGAAATGTCTCAGCT------TTGTTCCTTTTGAAAAGATGAGAACATAATGCA-TTACTTAGGTAATACTGCTTCT--C--TGATTCAGTGGGACAGCTTGACGAGAAG--ATATGATACTTTGTACATAACCATTGTTTTCCTTT-------------T-GTTATC-AA-TAAATTGAGTCTTTACTTCATTAGAGCCTACCCAAATGCATCATTGCAACAGATCATCTCCCCGCATTACTGTATCCATTATGTGCAGAGCAAGTTCTTCCAATTTCCCCAACAG---TTTATGAGAAAAAAGAACAAATTAAAAAGGCCTACTCTCTTACATATCAGGATGATTTATGCCACTGTGAGAGCCCACGTATTTATATTTTCTCTGGCCCTTCTATTTGCTTAATATATGAAGTAGGAAAGTTAATATTCTTCTGAAAAACTCTTTTCTGGTCTCTACTGATTTGAACATAAAGTTCAAAAGGAGATGATATCTTATAAAGACTCTAAGCTTACTGCATTAAATTAACAATACTAATCTCAGTGTTTCACATGGTAC-TATGCAGAGCTGTTTTACAGACATTAAATG----AAAAATGCCGAAGCTGTCTTTTATATGAAAAGCAAGAATAGAAACTTCTCTAGATATCCGTTCAAGTC--TTTTTAAAAGATATACTCCAGTTAGTGGTGGTGAATAGAGGGGAGGAAAGAGAGCCACATTGAATGGGTTTTTCTCCTGCTTACCATTCTTCAAC-TCAGACCTTTCTAAACCTCACTGACCTGGAGGAAATAAACAGAGAAGAAA-----GGAACATAGCAAG-----TGAAGGAGAAATGGACAATCATTCAAAAATG-TTTAG-AAAAATCAT------ i calJac3.chr3 C 0 C 0 s mm10.chr5 49259903 1027 + 151834684 TAGATTTTTTTTTCAATGT----CAAAGCAAACATCCAGTAAGGCCTATATATTTCCTGTGAC---CACTTTTCTGTCATCATTTCCATGACTGAATTCA--CAGATGTTGCTCTTGACTACAGGGG---TTTGTTTCCATTACAAACATTTTGC--------TGATGCAAAA-GAAGATATTGCT--TGAAAAGTTACGAATAAAAGTAAAATCAGAATCCCCCCCCCCCCAGATTGCTGCTTTTTGAAAGGCAATGATGTACTTCG-TTGCTGAGTTCACACTGCCTGTTAC--TGATGCAGAGCAGCAGA-TGGTGATAAGGCACAAGGCACTTTGTCCATAACCTTTGTTTGCTCTA-------------A-GTCATCAAA-TGAGCTAAGCCTTCCCCTCATTAGGCTCTTCCCAAATGCATGGCTGC---TGATCATCTCTCAGCATTATGGTCACCATTATCTACAGAGCAAATTCATCTCATTCTCCCAGCAGCTTTTTAAGAAAAAATAAAGTAAAGCGAAAAGACCCACTTTCCCGTATATCAAGGCTATTTCTGCTAATGTTAAAGTCCACGTATTTGTATTTTCTCTGGCCCTTCTATTTGCTTAATATATAAAGCAGGAAAATCATTGTTCTGCT-AAAACCTCTGTGCAGGCCCCTCGTGAGTTAAACACAAAGTTCAAAAGGAGATGGAATCTTATAAAGACTCCAAGCTTGCTGCATTAAATTAACAACACTAATCTCTGTGTTTCACATGCTACTTACAAAGCACAGTTTTACAGACATTAAATG-----AAAATGCCAAACCTGCCTTGTAGATAAAATGCAATAATGGAATCTCCTGTAGACATTCCTTTGGGTCTTTTTTTAAAGGATATACTTCAGCTA------CTGAATAAATAGGACAGGAGATAGCCACCTTGAATGAGCTTTTCTTCTCCTTAACCTTTATCAACTCTTGACCTTTCTAAACCCCATTCAACTAAAGAAAATAAATAGCAAAGAAGAATTTGGAGCAGGACAAGATGAGGGAAAAAGAAGTAAAGAA------AAATATA-TTCCA-AGAAAAAAA------ i mm10.chr5 C 0 I 18 s canFam3.chr3 3850186 1058 - 91889043 TAGATTTATT----AATAT----CAAAACAATCATCGACTAAATCCTCTGTATTTTCTTTGGC-GCCATTTCGCTCCACGCGTTTCTCTGAGTGTACAGATCCTGCTGTTGCTCCTGCCTATAGAAGAATATTACATTCCTTTCAAACATTTTATTTCAAACATTCTCTCAAAATAAAAGATAACCTTTGAAAGGGAATGCATAAAAATAAAATTGGAATGTCTCAGCT------TTGTTACTTTTTT-AAGATGAGAGCATAATGCACTTACTGAGGTAACACTGCCTCT--CTGTGATTTAGAGGAACAGCTTGATGATAAAATATACAGTACTTTGTCCATAATAACTTTTGTTTTTTGTGGGTTTTTTAAT-GTCATC-AATTGAGCTGGATCTTTACCTCATTAGAGCCTTTCCCAGTGCATCATTGCAACAGATCATCTCTCCACATTACTGTATCCATTATCTATAGAGCAAGTTCATCCAATTTCCCCAGCAG---TTTATGAGAAAAAAAAACAAATAAAAAAAGCCTACTTTCCCATATATCAGTGTGATTTATGCCAGTGTTAAAGCCCAAGCATTTGTATTTTCTCTGGCTCTTCTATTTGCCTAACATATGAAGTAGCAAAGTTAATATTCCTCTGAAAAACTCTGCTCTGGTCTCTACTGATTTGAACATAAAGTTCAAAAGGAGATTGTATCTTATAAAGACTCTAAGCTTACTGCATTAAATTAACAATACTAATCTCTGTGTTTCACATGGTACTTACTCAGAGCAGTTTTATAGACATTAAGTG-----AAAATGCCAAAGCTGTCTTTTAGATAAAAGGCATTAGCGGAAACTCCTCTAGACATTCCTTCAGGTC--TTTTTAAAGGATATTCTTCAGCTAGTTGTAGTCAATAA-GGAGTTGAGGGAGAGGTGCTCAAAATAGATTTTTCTCC--ACTATTTTTCCTCAACTCCAGACTTTTCTGAACCCCACTGAGTAGGGAGACATAAAAAGAGAAGGCA-----GGAGTGTGACAAGAAG-AAGAAGGAAAAATGGACAACCACTCGTAAATG-TAaaacaaaaaccaaagaaac i canFam3.chr3 I 245 C 0 a score=715528.000000 s hg38.chr4_KI270790v1_alt 152835 208 + 220246 CAATTACCAATCTCAGGAACTC-----------------------------TGGGAAGGAAACTAGACAACTATAACATTAGAAAATCCAGTTATACTCCCC-T--TCCAGACACACCCCATGGAGAAACTTGAAGAGGAAAGAGACGAAGCCAACTTCAGCCTCAAACAATTTTGCCCATGACATCAGAAGATGGTAGGACATGAAAGGGGAAAACTGCAGGAAGATCTCATAATTCTA s panTro4.chr4 21540933 208 + 193495092 CAATTACCAATCTCAGGAACTC-----------------------------TGGGAAGGAAACCAGACAACTATAACATTAGAAAATCCAGTTATACTCCCC-T--TCCAGACACACCCCATGGAGAAACTTAAAGAGGAAAGAGACGAAGCCAACTTCAGCCTCAAACAATTTTGCCCATGACATCAGAAGATGGTAGGACATGAAAGGGGAAAACTGCAGGAAGATCTCATAATTCTA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21716654 208 + 198332218 CAATCACCAATCTCAGGAACTC-----------------------------TGGGAAGGAAACCAGACAACTATAACATTAGAAAATCCAGTTATACTCCCC-T--TCCAGACACACACCATGGAGAAACTTGAAGAGGAAAGAGATGAAGCTAACTTCAGCCTCAAACAATTTTGCCCATGACATCAGAAGATGGTAGGACATGAAAGGGGAAAACTGCAGGAAGATCTCATAATTCTA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20327828 208 - 85365473 CAATCACCTATCTCAGGAACTC-----------------------------TGGGAAGGAAACCAGACAACTGTAACATTAGAAAATCCAGTTATACTCCCC-T--TCCAGACACACCCCATGGAGAAACTTGAAGAGGAAAGAGACGAAGCCAACCTCAGCCTCAAACAATTTTGCACATGGCATAAGAAGATGGTAGGACATGAAAGGGGAAAGCTGCAGGAAGATCTCATAATTCTA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16792990 208 + 184069350 CAATAACCAATCTCAGGAACTC-----------------------------TGGGAAGGAAACCAGACAGCTATAACAATAGAAAATCCAGTTATACTCCCC-T--TCCAGACACACCCCACGGAGAAACTTGAAGAGGAAAGAGACGAAGCCAATCTCAGCCTCAAACAATTTTGCACATGGCATAAGAAGATGGCAGGACATGAAAGTGGAAAGTTGCAGGAAGATCTCAGAATTCTA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20842916 208 + 189454096 CAATAACCAATCTCAGGAACTC-----------------------------TGGGAAGGAAACCAGACAGCTATAACAATAGAAAATCCAGTTATACTCCCC-T--TCCAGACACACCCCACGGAGAAACTTGAAGAGGAAAGAGACGAAGCCAATCTCAGCCTCAAACAATTTTGCACATGGCATAAGAAGATGGCAGGACATGAAAGTGGAAAGTTGCAGGAAGATCTCAGAATTCTA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16433113 208 + 178775436 caataACCAATCTCAGGAACTC-----------------------------TGGGAAGGAAACCAGACAGCTATAACAATAGAAAATCCAGTTATACTCCCC-T--TCCAGACACACCCCACGGAGAAACTTGAAGAGGAAAGAGACGAAGCCAATCTCAGCCTCAAACAATTTTGCACATGGCATAAGAAGATGGCAGGACATGAAAGGGGAAAGTTGCAGGAAGATCTCAGAATTCTA i papAnu2.chr5 I 211 C 0 s chlSab2.chr27 19916921 208 - 48547382 CAATAACCAATCTCAGCAACTC-----------------------------TGGGAAGGAAACCAGACAGCTGTAACAATTGAAAATCCAGTTATACTCCCC-T--TCCAGACACACCCCATGGAGAAACTTGAAGAGGAAAGAGACGAAGCCAATCTCAGCCTCAAACAATTTTGCACATGGCATAAGAAGATGGCAGGACATGAAAGGGGAAAGTTGCAGGAAGATCTCAGAATTCTA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21276385 207 - 190850796 CAATCACCAATATCAGGAATTC-----------------------------TGGGAAGGAAATCAGACAACTATAACACTAGAAAATCCAGTTATACTCCCC----TCCAGATATACCCCATGGAGACAATTGAAGAGGAAAGGGATGCAGCCCACTTCAGCCTCAAACAATTTTGCACATGTCATAAGGAGATGATAGAATATGAAAGGGGAAATCTGCAGGAAGATCTAGTGATTCTA i calJac3.chr3 C 0 C 0 s mm10.chr5 49260948 198 + 151834684 AAATCACCACCATCAGACGCTC----------------------------------AGGAGTCTGAGGAACTAACAAGCCAACAAATGCATGTATCCTTTCCAT--TGCTAATCTGCCCCAAGCAACCAGGTGAAGAAGAAAGA----AAATCAACTTCAGCCTCCAGCTAAATTGTGCATAAGATAA--AGATGGAGGAACATAAGTAGGGAAAGCCACAGGAAGACAAGACAAATCTC i mm10.chr5 I 18 C 0 s canFam3.chr3 3851244 224 - 91889043 aaacaaacaaacaaaaaaacacaaagcaaacaTGATCATCATCATGCCAAATCGGAGGGAAACAAGACAACTGTATCATTACAAAATCCAGTTACAGTCCCC-TGGTGTACCCATCCCTCAAGGAAACACTTGAGGAGGAAAGGGTCAAAGTCAACCCCAAACCCAAACAATTC---------------ATGACGGTAGGACAATAAAGGCGAAAGCTACAGAAAGCCTCCATGATTCTA i canFam3.chr3 C 0 I 785 a score=1151297.000000 s hg38.chr4_KI270790v1_alt 153043 360 + 220246 TAGACCTTAGGAAAA-TTCCGGCTCATCTCACATTAGTTTTCCAATTCTCCTTTTCCCATTTGTCTATGGAGATAGGAT-------AT----TTGAGCAGTCCCAACCACCTCTATTCTTGATTTCACATGTCCGTTAATTCAAAAACCATGTACTGAAAATCTCTCACATGCTCTGCTAGGATTAATAAAGACATCACACACA-AACAATGTCACTGCTAAGCTTATTGGGCTCAAGGTCTCACAA--------GGTATGTGAGAGAGGATGTTGGAGACAGAGCCAGGAATAGAAAGCTATAACAGTGATATGATATAAGTATGCATCAGGTGCTGTGAGATTCCACTCAA--ACAGTTTGTCC-AGACATGA------TATTTTTGT s panTro4.chr4 21541141 355 + 193495092 TAGACCTTAGGAAAA-TTCCGGCTCATCTCACATTAGTTTTCCAATTCTCCTTTTCCCATTTGTCTGTGGAGATAGGAT-------AT----TTGAGCAGTCCCAACCACCTCTATTCTTGATTTCACATGTCTGTTAATTCAAAAACCATGTACTGAAAATCTCTCACATGCTGTGCTAGGATTAATAAAGACATCACACATA-AACAATGTCACTGCTAAGCTTATTGGGCTCAAGGTCTCACAA--------GGTATGCTAGAGAGGATGTTGGAGACAGAGCCAGGAATAGAAAGCTGTAAC-----CATGATATAAGTATGCATCAGGTGCTGTGAGATTCCACTCAA--ACAGTTTGTCC-AGACATGA------TATTTTTGT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21716862 355 + 198332218 TAGACCTTAGGAAAA-TTCCGGCTCATCTCACATTAGTTTTCCAATTCTCCTTTTCCCATTTGTCTATGGAGATAGGAT-------AT----TTGAGCAGTCCCAACCACCTCTATTCTTGATTTCACATGTCTGTTAATTCAAAAACCATGTACTGAAAATCTCTCACATGCTCTGCTAGGATTAATAAAGACATCACAGGTA-AACAATGTCACTGCTAAGCTTATTGGGCTCAAGGTCTCACAA--------GGTATGTGAGAGAGGATGTTGGAGACAGAGCCAGGAATAGAAAGCTGTAAC-----AGTGATATAAGTATGCATCAGGTGCTGTGAGATTCCACTCAA--ACATCTTGTCC-AGACATGA------TATTTTTGT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20328036 360 - 85365473 TAGACCTTAGGAAAA-TTCCGGCTCATCTCACATTAGTTTTCCAACTCTCCTTTTCCCATTTGTCTATGGAGACAGGAC-------AT----TTGAGTAGTCCCAACCACCTCTATTCTTGATTTCACATGTCCATTAATTGAAAAATCATCTACTGAAAATCTCTCACATGCTCTGCTAGGATTAATAAAGACATCACATGTA-AACAATGTCACTGCTAAGCTTATTGGGCTCAAGGTCTCACAA--------GGTATGTGAGAGAGGATGTTGGAGACAGAGCCAGGAATAGAAAGCTATAACAGTGTTATGATATAAGTATGCATCAGGTGCTGTGAGATTCCACTCAA--AGAGTTTGTCC-AGACATGA------TTTTTTGGT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16793198 360 + 184069350 CAGACCTTAGGAAAA-TTCCAGCTCATCTCACATTAGTTTTCCAATTCTCCTTTTCCCATTTGGGAA--AAGATAGGAT-------AT----TTGAGCAGTCCCAACCACCTCTATTCTTGATTTCACATGTCGATTAATTCAAAAACCATCTACTGAAAATCCCTCACGTGCTCTGCTAGGATTAATAAAGACATCACACATA-CACAATGTCACTGCTAAGCTTATTGGGCTCAAGGTCTCAAAA--------GGTATGTGAGAGAGGATGTTGGAGACAGAGCCAGGAATAGAAAGCTGTAACAGTGGAATGATAAAAGTATACATCAAGTGCTGTGAGATTCCACTCAA--ACAGTTTGTCC-AGACATGA----ATTTTTTTGGT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20843124 360 + 189454096 CAGACCTTAGGAAAA-TTCCAGCTCATCTCACATTAGTTTTCCAATTCTCCTTTTCCCATTTGGGAA--AAGATAGGAT-------AT----TTGAGCAGTCCCAACCACCTCTATTCTTGATTTCACATGTCCATTAATTCAAAAACCATCTACTGAAAATCCCTCACGTGCTCTGCTAGGATTAATAAAGACATCACACATA-CACAATGTCACTGCTAAGCTTATTGGGCTCAAGGTCTCAAAA--------GGTATGTGAGAGAGGATGTTGGAGACAGAGCCAGGAATAGAAAGCTGTAACAGTGGAATGATAAAAGTATACATCAAGTGCTGTGAGATTCCACTCAA--ACAGTTTGTCC-AGACATGA----ATTTTTTTGGT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16433321 360 + 178775436 CAGACCTTAGGAAAA-TTCCAGCTCATCTCACATTAGTTTACCAATTCTCCTTTTCCCATTTGGGAA--AAGATAGGAT-------AT----TTGAGCAGTCCCAACCACCTCTATTCTTGATTTCACATGTCCATTAATTCAAAAACCATCTACTGAAAATCCCTCACGTGCTCTGCTAGGATTAATAAAGACATCACACATA-CACAATGTCACTGCTAAGCTTATTGGGCTCAAGGTCTCAAAA--------GGTATGTGAGAGAGGATGTTGGAGACAGAGCCAGGAATAGAAAGCTGTAACAGTGGAATGATAAAAGTATGCATCAAGTGCTGTGAGATTCCACTCAA--ACAGTTTGTCC-AGACATGA----Atttttttggt i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19917129 366 - 48547382 TAGACCTTAGGAAAA-TTCCAGCTCATCTCACATTAGTTTTCCAATTCTCCTTTTCCCATTTGTCTATGGAGATAGGAT-------AT----TTGAGCAGTCCCAAACACCTCTATTCTTGATTTCACATGTCCGTTAATTCAAAAACCACCTACTGAAAATCCCTCACATGCTCTGCTAGGATTAATAAAGACATCACACAGA-CACAATGTCACTGCTAAGCTTATTGGGCTCAAGGTCTCACAA--------GGTATGTGAGAGAGGATGTTGGAGACGGAGCCAGGAATAGAAAGCTCTAACAGTGGTATGATAAAAGTATGCATCAAGTGCTGTGAGATTCCACTCAA--ACAGTTTGTCC-AGACATGATTTTTTTTTTTTGGT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21276592 351 - 190850796 TAGACCTTGGTAAAA-TTCCTCCTCA--TCACATTAGCTTCCCAATTCTCCTTTTCCCATGTGTGAATGGAGATAGGAT-------AT----TTGAGCAGT-CCAAACAACTCTATTCTTGATTTTACATGTCCATTAATTTAAAAA-CATCTAATGAAAATCTCTCACATGGTCCACTAGGATTAATAAAGATATCACACATA-AACAGTGTCACTGCTAAG----TTGGGCTCAAGGTCTCACAA--------GGTATGTGAGAGAGGATGTTGGAGACAGATCCAGGAATAGAAAACTGTAATAGCGGAATGAAAAGCATCTACATCAGGTTCTATGAGATTCCACTC------AGTTTGTCC-AGACATGA---TTTGTTTTTTGT i calJac3.chr3 C 0 C 0 s mm10.chr5 49261146 350 + 151834684 TAGACTTTAACAAAAGTCCCTGCTCACATTACAGCATCTTTCCAAAGCCCCCTTTTCCACTTATCTATGGATAGAATATGCTTTCCAT----TT---TAGTCCTTAACAGCTC--TTTATAGTTGCATGATTTTATTAATTCTGAAAACATCTACTGGAAATCCTCCATGTATTTATCTCAG---TATAAAAGCATTGCACATA-AATTATAT---------GCTCATGGACCTTGTGGTTGTAGTGCTATTGTTAGTACGTTATCATGAAGTGCTGAGACAAAGGGAGGAATAGAGAGCCACAGACAAGCTATG------GTCAGTACCACCTTCTATATGACTCCAGTAAG--AAAAATAATCC-AGACA---------CATTTTTGT i mm10.chr5 C 0 I 236 s canFam3.chr3 3852253 372 - 91889043 TAGATCTTAACAAAA-TTCCTGCTCATCTCACTTTAGTTCTTAAATCGACCTTTACACACTTGTCTAT-GGTTTGGTAT-------ATATTCCTTTGCAGCCCCAACCACCTCTAATCTATATTTCACCTGTTTTTAAATTCAGAAACCTTCTATTGAAAATCTACTATATGCTCAGCTATGAT---TAAAGACATAGCATATGTCTTTATGTAATTATTACCCTTATTGGGCTCAGAGTCTTGGGG----TAGGGGCGTGCGAGGGAGGACACGGGAGAAAGAGTAAGG-GTAGACTATCACAGTAGCGCTGTGATAGGAATCTGCATGAGGTACTCTGCAAATCCACTCAAAGACAACATACCCAAGATGTAA-TTTTGTGTTTTTAT i canFam3.chr3 I 785 C 0 a score=6228.000000 s hg38.chr4_KI270790v1_alt 153403 3 + 220246 AAT- s panTro4.chr4 21541496 3 + 193495092 AAT- i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21717217 3 + 198332218 AAT- i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20328396 3 - 85365473 AAT- i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16793558 3 + 184069350 AAT- i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20843484 3 + 189454096 AAT- i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16433681 3 + 178775436 aat- i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19917495 3 - 48547382 AAT- i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21276943 3 - 190850796 AAT- i calJac3.chr3 C 0 C 0 s canFam3.chr3 3852625 3 - 91889043 -GTT i canFam3.chr3 C 0 C 0 e mm10.chr5 49261496 236 + 151834684 I a score=488892.000000 s hg38.chr4_KI270790v1_alt 153406 129 + 220246 AAAATTTCAAGTCTATGATGAT--TGCCTAGCTGCACAGATAAGTCTTTTTC---CAGAATAAAAGATAAGCCAACAATGACCACTTCCTTATTCCACAAATTGTTAGTCTCCATAGTAAGGTATGGAACAAAG s panTro4.chr4 21541499 129 + 193495092 AAAATTTCAAGTCTATGATGAT--TGCCTAGCTGCACAGATAAGTCTTTTTC---CAGAATAAAAGATAAGCCAACAATGACCACTTCCTTATTCCACAAATTGTTAGTCTCCATAGTAAGGTATGGAACAAAG i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21717220 129 + 198332218 CAAATTTCAAGTCTATGATGAT--TGCCTAGCTGCACAGATAAGTCTTTTTC---CAGAATAAAAGATAAGCCAACAATGACCACTTCCTTATTCCACAAATTGTTAGTCTCCATAGTAAGGTATGGAACAAAG i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20328399 129 - 85365473 AAAATTTCAAGTCTGTGATGAT--TGCCTAGCTGCACAGATAAGTCTTTTTC---CAGAATAAAAGATAAGCCAACAGTGACCACTTCCTTATTCCACAAATTGTTAGTCTCCATAGTGAGGTATGGACCAAAG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16793561 129 + 184069350 AAAATTTTAAGTCTATGATGAT--TGCCCAGCTGCACAGAAAAGTCTTTTTC---CAGAATAAAAGATAAGCCAACAATGACCACTTCCTTATTCCACAAATTGTTAGTCTCTATACTGAGGTGTGGAACAAAG i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20843487 129 + 189454096 AAAATTTTAAGTCTATGATGAT--TGCCCAGCTGCACAGAAAAGTCTTTTTC---CAGAATAAAAGATAAGCCAACAATGACCACTTCCTTATTCCACAAATTGTTAGTCTCTATAGTGAGGTGTGGAACAAAG i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16433684 129 + 178775436 aaaattttaagtctaTGATGAT--TGCCCAGCTGCACAGAAAAGTCTTTTTC---CTGAATAAAAGATAAGCCAACAATGACCACTTCCTTATTTCACAAATTGTTAGTCTCCATAGTGAGGTGTGGAACAAAG i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19917498 129 - 48547382 AAAATTTTAAGTCTATGATGAT--TGCCCAGCTGCACAGAAAAGTCTTTTTC---CAGAATAAAAGATAAGCCAACAATGACCACTTCCTTATTCCACAAATTGTTAGTCTCCATAGTGAGGTGTGGAACAAAA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21276946 129 - 190850796 AAAAATTTAAGTTTATAATGAT--TGCCTATCTGGACAGATAAGTCTTTTTC---CAGAATAAAAGATAAGCCAACAATAACCACTTTTTTATTCCACAAATTGCTAGTCTCCATAGTGAGGTATGGAACAAAG i calJac3.chr3 C 0 C 0 s mm10.chr5 49261732 131 + 151834684 AAAACTTCCATTCTATAAAAAT--CTCCTATTTGCACAAGTAAATCTTTTTTGTACATTAGAAATGGTAAG-AAAAAATCTCTGCATCTTCATTCTAGAAGTTGCTAGTCTTCATGGTCGATAGTGGAACAAGG i mm10.chr5 I 236 I 68 s canFam3.chr3 3852628 129 - 91889043 AAAATTTCAAACCCATGATGACTATGTGCCACGGCACAGATAAGTCTTGTTC---CACAG-AAAAAATGAGATAAAAATGATCGCTTCCTTATTCCATAAGCTGATGGTCTCCACAGTG-GGCATGGAATAAGG i canFam3.chr3 C 0 C 0 a score=922478.000000 s hg38.chr4_KI270790v1_alt 153535 279 + 220246 TCTGGAAGGAAAATATTATGAAGAATTGCGAATAATGCTTCTACTTACTTATTTTTGGGAGAA-----TTAAG-----CTAAAGCTTAATGAAT---TGTATTGAATGCCACTGAATCACATTGGACATTGATGGAAGAAAAGGAAGTTCTACGGTGGGACAGGCGGTGCAGCAAGCTGCCCATCATTGTACAGAGGTTCACCTTCAGTACTCTGCAGCATCTTCTAGTTTGTGTGTACCTTGGTTAACTTGATAGATAGATCACACTATTTAGCATAGTATCTCACTccaa s panTro4.chr4 21541628 279 + 193495092 TCTGGAAGGAAAATATTATGAAGAATTGCGAATAATGTTTCTACTTACTTATTTTTGGGAGAA-----TTAAG-----CTAAAGCTTAATGAAT---TGTATTGAATGCCACTGAATCACATTGGAAATTGATGGAAGAAAAGGAAGTTCTATGGTGGGACAGGCGGTGCAGCAAGCTGCCCATCATTGTACAGAAGTTCACCTTCAGTACTCTGCAGCATCTTCTAGTTTGTGTGTACCTTGGTTAACTTGATAGATAGATCACACTATTTAGCATAGTATCTCACTccaa i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21717349 279 + 198332218 TCTGGAAGGAAAATATTATGAAGAATTGTGAATAATGCTTCTACTTACTTATTTTTGGGAGAA-----TTAAG-----CTAAAGCTTAATGAAT---TGTATTGAATGCCACTGAATCACAGTGGAAATTGATGGAAGAAAAGGAAGTTCTATGGTGGCACAGGCGGTGCAGCAAGCTGCCCATCATTGTACAGAAGTTCGCCTTCAGTACTCTGCAGCATCTTCTAGTTTGTGTGTACCTTGGTTAACTTGATAGATAGATCACACTATTTAGCATAGTATCTCACCccaa i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20328528 278 - 85365473 TCTGGAAGGAAAATATTAAGAAGAATTCTGAATAATGCTTCTACTTACTTATTTTTGGGAGAA-----TTAAG-----CTAAAGCTTAATGAAT---TGTATTGAATGCCACTGAATCACAGTGGAAATTGATGGAAG-AAAGGAAGTTCTATGGTGGCACAGGCGGTGCAGCAAGCTGCCCATCATTGTACAGAAGTTCACCTTCAGTACTCTACAGCATCTTCTAGTTTGTGTGTACCTTGGTTAACTTGATAGATATATCACACTACTTAGCATAGTATCTCACTccaa i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16793690 279 + 184069350 TCTGGAAGGAAAATATTATGAAGAATTGTGAATAATGCTTCTACTTACTTATTTTTGGGAGAA-----TTAAG-----CTAAAGCATAATGAAT---TGTATTGAATGTCATTGAATCACAGTGGAAATTGATGGAAGAAAAGGAAGTTCTATGGTGGCACAGGCGGTGCAGCAAACTGCCCATCGTTATACAGAAGttcacctccagtactctgcagcatcttctagtttgtgtgtaccttggttaacttgatagacagatcacactatttagcatagtatctcactccaa i rheMac3.chr5 C 0 I 1947 s macFas5.chr5 20843616 279 + 189454096 TCTGGAAGGAAAATATTATGAAGAATTGTGAATAATGCTTCTACTTACTTATTTTTGGGAGAA-----TTAAG-----CTAAAGCATAATGAAT---TGTATTGAATGTCATTGAATCACAGTGGAAATTGATGGAAGAAAAGGAAGTTCTATGGTGGCACAGGCGGTGCAGCAAACTGCCCATCGTTATACAGAAGttcacctccagtactctgcagcatcttctagtttgtgtgtaccttggttaacttgatagacagatcacactatttagcatagtatctcactccaa i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16433813 279 + 178775436 TCTGGAAGGAAAATATTATGAagaattgtgaataatgcttctacTTACTTATTTTTGGGAGAA-----TTAAG-----CTAAAGCGTAATGAAT---TGTATTGAATGTCATTGAATCACAGTGGAAATTgatggaagaaaaggaagttcTATGGTGGCACAGGTGGTGCAGCAAACTGCCCATCATTATACAGAAGTTCACCTCCAGTACTCTGCAGCATCTTCTAGTTTGTGTGTACCTTGGTTAACCTGATAGACAGATCACACTATTTAGCATAGTATCTCACTCCAA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19917627 279 - 48547382 TCTGGAAGGAAAATATTATGAAGAATTGTGAATAATGCTTCTACTTACTTATTTTTGGGAGAA-----TTAAG-----CTAAAGCGTAACGAAT---TATATTGAATGCCATTGAATCACAGTGGAAATtgatggaagaaaaggaagttctatggtggcacaggtggtgcagcaaactgcccattgttgtacagaagttcacctccagtactccgcagcatcttctagtttgtgtgtaccttggttaacttgatagacagatcacactacttaacatagtatctcactccaa i chlSab2.chr27 C 0 I 1433 s calJac3.chr3 21277075 284 - 190850796 TCTGGGAGGAAAATATTATGAAGAATTGTGAATAATGCTCCTACTTACTTATTTTGGGGAAAATCAAGTTGAG-----CTAATGCTTAATGAAC---TGTATTGGATGCCACCAAATCACAGTGGAAATTGAtgaaagaaaaggaagatctacagtggcacaggctgtgcagtgagccgcccatcattgtacagaagatcaccttcagcagtctgcagcatcttctagcttgtgtgtatgttagttaagttgactgacagatcacactatttagcatagtacctcactataa i calJac3.chr3 C 0 C 0 s canFam3.chr3 3852757 276 - 91889043 TATGGGAAGAAAATACTATAAACGATTATGACTAATACTTTTATTTATTT-TTTTAGAGAGCA-----TTAAGTTGCATTAACTCTTAATGAACACATTGACTGCATGTCACTAAAGCACAGAAGTACTCAGTGGAAGGAAAGAAATTGCTATCGTCTCACAGGCTATGCAGGGAggcaccca----cacacactcgttcacacgcaacacactgcaaca---tctagtctgtgtgtacc-cggctaggtagactgatagagcacactgtgtggggc--taccctattccaa i canFam3.chr3 C 0 C 0 e mm10.chr5 49261863 68 + 151834684 I a score=1300.000000 s hg38.chr4_KI270790v1_alt 153814 2 + 220246 tc s panTro4.chr4 21541907 2 + 193495092 tc i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21717628 2 + 198332218 tc i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20328806 2 - 85365473 tc i nomLeu3.chr20 C 0 C 0 s macFas5.chr5 20843895 2 + 189454096 ct i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16434092 2 + 178775436 CT i papAnu2.chr5 C 0 C 0 s calJac3.chr3 21277359 2 - 190850796 ct i calJac3.chr3 C 0 I 1259 s canFam3.chr3 3853033 2 - 91889043 ct i canFam3.chr3 C 0 C 0 e mm10.chr5 49261863 68 + 151834684 I e chlSab2.chr27 19917906 1433 - 48547382 I e rheMac3.chr5 16793969 1947 + 184069350 I a score=1239.000000 s hg38.chr4_KI270790v1_alt 153816 2 + 220246 -aa s panTro4.chr4 21541909 2 + 193495092 -aa i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21717630 2 + 198332218 -aa i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20328808 2 - 85365473 -aa i nomLeu3.chr20 C 0 C 0 s macFas5.chr5 20843897 2 + 189454096 -aa i macFas5.chr5 C 0 I 1978 s papAnu2.chr5 16434094 2 + 178775436 -AA i papAnu2.chr5 C 0 I 1986 s calJac3.chr3 21278620 2 - 190850796 -aa i calJac3.chr3 I 1259 C 0 s canFam3.chr3 3853035 2 - 91889043 ca- i canFam3.chr3 C 0 C 0 e mm10.chr5 49261863 68 + 151834684 I e chlSab2.chr27 19917906 1433 - 48547382 I e rheMac3.chr5 16793969 1947 + 184069350 I a score=159068.000000 s hg38.chr4_KI270790v1_alt 153818 204 + 220246 tgcctgtcaataatagactggataaagaaaatgtggtac--atatatataccatggaat----actatgcag--------ccataaaaaggaatgagatcatgtcctttgcagggacacggatgaagctggaagccattatcctcagcaaac--------aaacacaggaacagaaaaccaaacaccgcatgttc---tcactcataagtgggagttgaacaatgagaa s panTro4.chr4 21541911 204 + 193495092 tgcctgtcaataatagactggataaagaaaatgtggtac--atatatataccatggaat----actatgcag--------ccataaaaaggaatgagatcatgtcctttgcagggacatggatgaagctggaagccattatcctcagcaaac--------aaacacaggaacagaaaaccaaacaccgcatgttc---tcactcataagtgggagttgaacaatgagaa i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21717632 204 + 198332218 ttcccgtcaataatagactggataaagaaaatgtggtac--atatatataccatggaat----actatgcag--------ccataaaaaggaatgcgatcatgtcctttgcagggatatggatgaagctggaagccattatcctcagcaaac--------aaacacaggaacagaaaaccaaacaccgcatgttc---tcactcataagcgggagttgaacaatgagaa i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20328810 203 - 85365473 tgcccatcaataatagactggatgaagaaaatgaggtac----atatacaccatgaaata---accatgcag--------ccataaaaaggaatgagatcatgtcctttgcagggacatggatgaagttggaagccattatcctcagcaaac--------aaacacaggaacagaaaaccaaacaccacatgttc---tcactcataagcgggagttgaacaatgagaa i nomLeu3.chr20 C 0 C 0 s calJac3.chr3 21278622 211 - 190850796 tgcccatcaatgatagactggataaagaaaatgtcata---acatatataccatggaat----agtatgcagccataaaaccataaaaaggaatgagatcacgtcctttgcaggaacatggatgaagctggaagccatcatcctcagaaaac--------taacatagaaacagaaaaccaaatacctcatgttt---tcactcataagtgcgagttgaacaatgagaa i calJac3.chr3 C 0 C 0 s canFam3.chr3 3853037 201 - 91889043 ----ctttcacaaaagagataatagaaacagt-tgattcgtaaaaacaaaccttggattatggataatac----------ttataatgctggcagagatcaagaacatagcag------aggtgactct------tcttatccttggcaggccttggtttcaatcaagtgacaggcaaaggaa-atgatatattcagatcagaaatgaatgaacttctaacgatgtgaa i canFam3.chr3 C 0 I 259 e mm10.chr5 49261863 68 + 151834684 I e chlSab2.chr27 19917906 1433 - 48547382 I e macFas5.chr5 20843899 1978 + 189454096 I e rheMac3.chr5 16793969 1947 + 184069350 I e papAnu2.chr5 16434096 1986 + 178775436 I a score=124718.000000 s hg38.chr4_KI270790v1_alt 154022 173 + 220246 cacatggacacagagaggggaacgtcaca--ccagggcctattgggcagt-tgggggtgaggagagggaacttagaggatgggtcaacaggttcagcaaaccaccatggcacaggtatacctatgtaacaaacctacacgttctgcacatatatcccgg-ttttttttagaagaaaA s panTro4.chr4 21542115 173 + 193495092 catatggacacagagaggggaacgtcaca--ccagggcctattgggcagt-ggggggtgaggagagggaacttagaggatgggtcaacaggtccagcaaaccaccatggcacaggtatacctatgtaacaaacctacgcgttctgcacatatatcccgg-ttttttttagaagaaaA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21717836 173 + 198332218 cacatggacgcagagaggagaatgtcaca--ccagggcctgttgggcggt-ggggggtgaggagagggaacttagaggatgggtcaataggttcagcaaaccaccatggcacaggtatacctatgtaacaaatctacacgttctgcacgtatatcctgg-gttttttttagaagaaa i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20329013 172 - 85365473 cacatggacacagagaggggaacatcaca--ccagggcctgttgggtggtgggggggtgaggagagggaacttagaggatgggtcaataggtccagcaaaccaccatggcacaggtatacctatgtaacaaacctacccgttctgcacatatatcccg---ttttcttagaagaaaA i nomLeu3.chr20 C 0 C 0 s calJac3.chr3 21278833 176 - 190850796 cacagggacacagacaggggaacagcataccccaaggcctgttgggggat-gggggctgaagagagagatcttagtggatgggccaatagcttcagcaaaccgtcatggaacatgtacacttatggaacaaacctacacgttctgtacatgtatcttgGCTTTTTTTTAAGAAGGAA i calJac3.chr3 C 0 C 0 e mm10.chr5 49261863 68 + 151834684 I e chlSab2.chr27 19917906 1433 - 48547382 I e macFas5.chr5 20843899 1978 + 189454096 I e rheMac3.chr5 16793969 1947 + 184069350 I e canFam3.chr3 3853238 259 - 91889043 I e papAnu2.chr5 16434096 1986 + 178775436 I a score=81806.000000 s hg38.chr4_KI270790v1_alt 154195 72 + 220246 AAAAACTGCT-GTATTAAGGCATAGATAAGAGggaaactgcatgtcatcatttactaagcacaaggtatgatg s panTro4.chr4 21542288 72 + 193495092 AAAAACTGCT-GTATTAAGGCATAGATAAGAGggaaactgcatgtcatcatttactaagcacaaggtatgatg i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21718009 72 + 198332218 AAAAACTGCT-GTATTAAGGCAtagatgagagggaaactgcatgtcatcatttactaagcacaaggtatgatg i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20329185 72 - 85365473 AAAAACTGCT-GTATTAAGGCAtagatgagagggaaactgcatgtcatcatttagtaagcacaaggtatgatg i nomLeu3.chr20 C 0 C 0 s calJac3.chr3 21279009 71 - 190850796 AAAAACTGCT-GTATTAAGGCAtagatgagagggaaactgcatgtcatcatttagtaagcac-aggtatgatg i calJac3.chr3 C 0 C 0 s canFam3.chr3 3853497 73 - 91889043 AACAATTGCTAATATTAAGGCACAGATAAGAGCGaaaatacacattatgattcagtaagcaggaggtttgatg i canFam3.chr3 I 259 C 0 e mm10.chr5 49261863 68 + 151834684 I e chlSab2.chr27 19917906 1433 - 48547382 I e macFas5.chr5 20843899 1978 + 189454096 I e rheMac3.chr5 16793969 1947 + 184069350 I e papAnu2.chr5 16434096 1986 + 178775436 I a score=1262095.000000 s hg38.chr4_KI270790v1_alt 154267 412 + 220246 tgcttcttacatttttatgaagatatttatgtgaaaactttttcaatcattaaaagcgggtataaaactgaaatta---gaactaagttctgaattgacatgt--------------------atcaagattttcaaaaataattaagtacatataatcaagctgccctcactaaaattattaCAAATATTCTATTATTATATACAAGAAGATAACAATATGCAATATATACAATTCTAACATGTTAATGAGAGCTAAAACTTT----CTTTGATAATCCACAAAAGTATTCAAatatttaattttttatcaaccttaacattttatatttcagtttctctatgttttg-----gacacaatattttagcagagtaatacaatttacttataatttataaataaataaacacaGTGAGAAGTATATACTCTCTATTTATATCTA s panTro4.chr4 21542360 432 + 193495092 tgcttcttacatttttatgaagatatttatgtgaaaactttttcaatcattaaaagtgggtataaaactgaaatta---gaactaagttctgaattgacatgtatcaataacccaaagtacaaatcaagattttcaaaaataattaagtacatataatcaagctgccctcactaaacttattaCAAATATTCTATTATTATATACAAGAAGATAACAGTATGCAATATATACAATTCTAACATGTTAATGAGAGCTAAAACTTT----CTTTGATAATCCACAAAAGTATTCAAATATTTAATTTTTTATCAATCTTAACATTTTATATTTCAGTTTCTCTATGTTTTG-----GACACAATATTTTAGCAGAGTAATACAATTTACttataatttataaataaataaaCACAGTGAGAAGTATATACTCTCTATTTATATCTA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21718081 432 + 198332218 tgcttcctacatttttatgaagatgtttatgtgaaaactttttcaatcattaaaagcatgtataaaacttaaatta---gaactaagttctgaattgacatgtatcaataacccaaaatacaaatcaagattttcaaaaataattaagtacatataatcaagctgccctcactaaaattattaCAAATATTCTATTATTATATACAAGAAGATAACAATATGCAATATATACAATTCTAACATGTTAATGAGAGCTAAAACTTT----CTCTGATAATTCACAAAAGTGTTCAAATATTTGATTTTTTATCAATCTTAACATTTTATATTTCAGTTTCTCTATGTTTTG-----GACACAATATTTTAGCAGAGTAATACAATTTACttataatttataaataaataaaCACAGTGAGAAGTATATACTCTCTATTTATATCTA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20329257 425 - 85365473 tgcttcttacatttttatgaagatatttatgtgaaaa-tttttcaatcattaaaagcaggtataaaactgaaatta---gaactaagttctgaattgacatttatcaataacccaaagtacaaatcaagattttcaaaaataattaagtacatataatcacactgccctcactaaaattattacaaa-----tattattatatacaataagataacaatatgcaatatatacaattctaacatgttaatgagagctaaaacttt----ctttgataattcacaaaagtgttcaaatatttaa-ttgttatcaaccttaacattttatgtttcagtttttctatgttttg-----gacacaatattttagcagagtaatactatttacttataatttataaataaataAACACAGTGAGAAATACGTACTCTCTATTTATATCTA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16795916 425 + 184069350 tgcttcttacatttttatgaagttatttatgtgaaaactttttcaattattaaaagcggatataaaactaaaatta---gaactaagttctgaattaatatgtatcaataacccaaagtacaaatcaagattttcaaaaataattaagtacatataatcacactgccctcactaaaattattacaaatagtCTATTATTATATACAATAAGATAACAATATGCAATATATACAACTCTAAC--GTTAGTGAGTGCAAAAAGTTT----CTTTGATAATTCACAAAAATATTCAAA----TAATTTTTTATCAATCTTAACACTTTATGTTTCAGTTTTTCTGTGTTTTG-----GACACAATATTTTAGCAGAGTAATACAATTTACTTATAATGTATAAATAAATAAACACAGTGAGATATATGTA-GATATATTTATATCTA i rheMac3.chr5 I 1947 C 0 s macFas5.chr5 20845877 425 + 189454096 tgcttcttacatttttatgaagttatttatgtgaaaactttttcaattattaaaagcggatataaaactaaaatta---gaactaagttctgaattaatatgtatcaataacccaaagtacaaatcaagattttcaaaaataattaagtacatataatcacactgccctcactaaaattattacaaatagtCTATTATTATATACAATAAGATAACAATATGCAATATATACAATTCTAAC--GTTAGTGAGTGCAAAAAGTTT----CTTTGATAATTCACAAAAATATTCAAA----TAATTTTTTATCAATCTTAACACTTTATGTTTCAGTTTTTCTGTGTTTTG-----GACACAATATTTTAGCAGAGTAATACAATTTACTtataatttataaataaataaacacagtgagatatatgta-gatatatttatatcta i macFas5.chr5 I 1978 C 0 s papAnu2.chr5 16436082 422 + 178775436 tgcttcttacatttttatgaagatatttatgtgaaaattttttcaattattaaaagcagatataaaactaaaatta---gaactaaGTTCTGAATTAATATGTATCAATAACCCAAAGTACAAAtcaagattttcaaaaataattaagtaCATATAATCACACTGCCCTCactaaaattattacaaatagtCTATTATTATATACAATAAGATAACAATATGCAATACATACAATTCTAAC-----AGTGAGTGCAAAAAGTTT----CTTTGATAATtcacaaaaatattcaaa----taattttttatcaatCTTAACACTTTATGTTTCAGTTTTTCTATGTTTTG-----GACACAATATTTTAGCAGAGTAATACAATTtacttataatttataaataaataaacacagtgagatatatgta-gatatatttatatcta i papAnu2.chr5 I 1986 C 0 s chlSab2.chr27 19919339 419 - 48547382 tgctttttacatttttatgaagatatttatgtgaaaattttttcaatcattaaaagcagatataaaactaaaatta---gaactaagttctgaattaacatgtatcaataacccaaagtataaatcaagattttcaaaaataattaagt----------acactgccttcactaaaattattacaaatagtCTATTATTATATACAATAAGATAACAATATGCAATATATACAATTCTAAC--GTTAATGAGTGCAAAAAGTTT----CTTTGATAATTCACAAAAATATTCAAATACTTAATTTTTTATCAATCTTAACACTTTATGTTTCAGTTTTTCTATGTTTTG-----GACATAACATTTTAGCAGAATAATACAATTTACTtataatttataaataaataaacacagtgagatatatgta-gatatatttatatcta i chlSab2.chr27 I 1433 C 0 s calJac3.chr3 21279080 406 - 190850796 tgcttcttacatttttatgaagatatttatgttaaaactttttcaattattaaaagc-------------aaatta---gaactaagttctgaactgacatgtatcaataacccaaagtacaaatcaagattttcaaaaataattaagtacatataatcacattgccctcactacaattattaCAAATACTCTATTATTACATACAAGAAGATAGCAATATGCAATAAATACAATTCTAACATGTTAATGAGAG---AAATTGT----TTTTGGTAATTCataaaaatattaaaacatttaattttttatCTATCCCAACATTTTATATTTCAGTTTTTCTATGTTTTG-----GACAAAATATTTTAGCAGAGTAATACaatttatttataatatataaataa------aCAGTGAGATGTATGTG----CTTTCTGTATCTA i calJac3.chr3 C 0 C 0 s canFam3.chr3 3853570 411 - 91889043 tgctgcttctatattggtatacatgtgtgtgcaataactttttcaaccattgaaag----tacacaatccttattatataaactaagtttggaactgaagtattaagaaagagaaaagta-aaatcaagattttcaaaaataattgagaagatataatcatatcgttcttgctaaagttattaggggta---tcttgttatacataagaaga----------cgacatattttactctgatattttaat----acgaaaacatctgaattttgttaattagtaaaaatgtttagatgttt-attttatatccacttcactatttcacatgttaatatttgtatgtgttatgatttgtacaagattttgacagagta--------tgtgtatgatttataaataaac--acatattaaggagtatgtgctGTCTGTCTATATCTA i canFam3.chr3 C 0 I 935 e mm10.chr5 49261863 68 + 151834684 I a score=23595.000000 s hg38.chr4_KI270790v1_alt 154679 10 + 220246 CATAcagttg s panTro4.chr4 21542792 10 + 193495092 CATAcagttg i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21718513 10 + 198332218 CATAcagttg i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20329682 10 - 85365473 CATAcagttg i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16796341 10 + 184069350 CGTACTGTta i rheMac3.chr5 C 0 I 55 s macFas5.chr5 20846302 10 + 189454096 CGTACCgttg i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16436504 10 + 178775436 cataccgttg i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19919758 10 - 48547382 CGTACCgttg i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21279486 10 - 190850796 TATAAagttg i calJac3.chr3 C 0 C 0 e mm10.chr5 49261863 68 + 151834684 I e canFam3.chr3 3853981 935 - 91889043 I a score=130262.000000 s hg38.chr4_KI270790v1_alt 154689 57 + 220246 aaccttaaacaatttatatttgaactgcatgggcccacttgcggattgttttcaata s panTro4.chr4 21542802 57 + 193495092 acccttaaacaatttatatttcaactgcatgggcccacttgtggattgttttcaata i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21718523 57 + 198332218 acccttaaacaatttatatttgaactgcatgggtccacttgtggattgttttcaata i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20329692 56 - 85365473 acccttaaacaatttatatttgaactgcatgggtccacttgtggatt-ttttcaata i nomLeu3.chr20 C 0 C 0 s macFas5.chr5 20846312 57 + 189454096 acccttaaacaatttatatttgaactgcatgggtccccttgtggattgttttcaatg i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16436514 57 + 178775436 acccttaaacaatttatatttgaactgcatgggtccccTTGTGGATTGTTTTCAATG i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19919768 57 - 48547382 acccttaaacaatttatatttgaactgcatgggtccccttgtggattgttttcaata i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21279496 57 - 190850796 actcctgaacaatttacatttgaactgtatgggtctacttgtggattgctttcaata i calJac3.chr3 C 0 C 0 e mm10.chr5 49261863 68 + 151834684 I e rheMac3.chr5 16796351 55 + 184069350 I e canFam3.chr3 3853981 935 - 91889043 I a score=637894.000000 s hg38.chr4_KI270790v1_alt 154746 226 + 220246 aaagttataccaaatgcgcctgcctctcccgtctctccttctagttcctacagctctgccactttgcctaaaaatcagcaagaccacctgcctgcttctcctcctcctcagcctactcaatgtaaagacaatcaagaggaatacttttatgataatccactttcacttaatgcatagtagacattttctctttcttatgatttt---ccctgcctccctccctccctcc s panTro4.chr4 21542859 226 + 193495092 aaagttacaccaaatgtgcctgcctgtcctgtctctccttctagttcctccagctctgccactttgcctaaaaatcagcaagaccacctgcctgcttctcctcctcctcagcctactcaatgtaaagacaatcaagaggaatacttttatgataatccactttcacttaatgcatagtagacattttctctttcttatgatttt---ccctgcctccctccctccctcc i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21718580 226 + 198332218 aaagttacaccaaatgtgcctgcctctcctgtctctccttccagctcctccagctctgccactttgcctaaaaatcagcaagaccacctgcctgcttctcctcctcctcagcctactcaatgtaaagacaatcaagaggaatacttttatgataatccactttcacttaatgcatagtagacattttctctttcttatgatttt---ccctgcctccctccctccctcc i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20329748 214 - 85365473 aaagttacaccaaatgtgcctgcctctcctgtctctccttccagctcctccagctctgccactttgcctaaaaatcagcaagaccacttgcctgcttctcctcctccttagcctactcaatgtaaagacaatcaagaggaatacttttatgatgatccactttcacttaatgcatagtagacattttctctttcttatgat---------------cttccccccctgc i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16796406 229 + 184069350 aaagttacaccaagtgtgcctgcctctcctgtctctccttccagctcctccagctccgccactttgcctaaaacccagcaaggccacctgcctgcttctcctcctcctcagcctactcaatgtaaagacaatgaagaggaatacttttatgatgatccacttccaattaatgcatagtacacattttctctttcttatgattttcttCActccctccctccctccctcc i rheMac3.chr5 I 55 I 161 s macFas5.chr5 20846369 229 + 189454096 aaagttacaccaagtgtgcctgcgtctcctgtctctccttccagctcctccagctccgccactttgcctaaaactcagcaagaccacctgcctgcttctcctcctcctcagcctactcaatgtaaagacaatgaagaggaatacttttatgatgatccacttccaattaatgcatagtacacattttctctttcttatgattttctCccctccctccctcccttcctcc i macFas5.chr5 C 0 I 32 s papAnu2.chr5 16436571 229 + 178775436 AAAGTTACAccaagtgtgcctgcctctcctgtctCTCCTTCCAGCTCCTCCAGCTCCGCCACTTTGCCTAAAACTCAGCAAGACCACctgcctgcttctcctcctcctcagcctactcaatgtaaAGACAATGAAGAGGAATacttttatgatgatccacttccaatTAATGCATAgtacacattttctctttcttatgattttctcccctccctccctccctccctcc i papAnu2.chr5 C 0 I 64 s chlSab2.chr27 19919825 229 - 48547382 aaagttacaccaggtgtgcctgcctctcctgtctctccttccagctcctccagctctgccactttgcctaaaactcagcaagaccacctgcctgcttctcctcctcctcagtctactcagtgtaaagacaacgaagaggaatacttttatgatgatccacttccaattaatgcatactacacattttctctttcttatgattttctCccctccctccccccctcccctc i chlSab2.chr27 C 0 I 76 s calJac3.chr3 21279553 211 - 190850796 aatgttacaccgagtgtgcctgcctctcctgtctctccttccacctcctctacctctgccactttgcctaaaacataccaagaacaccttcctgtttctcctcttcctcagtctactcaatgtaaacacaatgaggataaatacttttatgacaatccacttccacttaatgtatactacatatttttccctt--------------ccctctctccttccctcc---- i calJac3.chr3 C 0 C 0 e mm10.chr5 49261863 68 + 151834684 I e canFam3.chr3 3853981 935 - 91889043 I a score=32816.000000 s hg38.chr4_KI270790v1_alt 154972 21 + 220246 c----ttccttccttccttccAAGA s panTro4.chr4 21543085 21 + 193495092 c----ttccttccttccttccAAGA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21718806 25 + 198332218 ctccatcccttccttccttccAAGA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20329962 21 - 85365473 a----ttccttccttccttccaaga i nomLeu3.chr20 C 0 C 0 s macFas5.chr5 20846630 21 + 189454096 c----ttcctcccttccttccttGA i macFas5.chr5 I 32 I 1 s papAnu2.chr5 16436864 21 + 178775436 c----ttccttccttccttcctttc i papAnu2.chr5 I 64 I 17 s chlSab2.chr27 19920130 21 - 48547382 c----ttcctcccttccttccttcc i chlSab2.chr27 I 76 I 5 s calJac3.chr3 21279764 21 - 190850796 c----ttccttctttttttctgaga i calJac3.chr3 C 0 C 0 e mm10.chr5 49261863 68 + 151834684 I e rheMac3.chr5 16796635 161 + 184069350 I e canFam3.chr3 3853981 935 - 91889043 I a score=1532476.000000 s hg38.chr4_KI270790v1_alt 154993 521 + 220246 ----CAGGgtcacctaggctggagtgcattgttgcaaacatagcttgctgcagcctcgacctcccgagctcaggtgatcctccttcccagcctcctgtgtagctgggaccacaggtgcgtgccaac--------------------------gtagagacagagtctcactttgttgcccaggctgttttcaaattcctgggcccaaacaatcctctggccttggcctcccaaagtgctaggattacaggcatgagacaccatgcccagccataattttcttaataacattttcttttctttaactaatttactgtaagaatacaacatacaatacatgtaacatataaaatacatgttaatcaactgaatatattatcagtaagccttttggtcaacagcagacaaccagtagttaagtttgggggagtcaaaagttttatgtggatttttgactgtgctgagatgggcactcctaaacccacattgtttaggagtcaactgTCTTTTTTAAATTTATAGAGCAGATAATGCAAAGTA-TGATGACCCCTA s panTro4.chr4 21543106 521 + 193495092 ----CAGGgtcacctaggctggagtgcattgttgcaaacatagcttgctgcagcctcgacctcccgagctcaggtgatcctccttcccagcctcctgtgtagctgggaccacaggtgcatgccaat--------------------------gtagagacagagtctcactttgttgcccaggctgttttcaaattcctgggctcaaacaatcctctggccttggcctcccaaagtgctaggattacaggcatgagacaccatgcccagccataattttcttaataacattttcttttctttagctaatttactgtaagaatacaacatacaatacatgtaacatataaaatacatgttaatcaactgaatatattatcagtaagccttttggtcaacagcagacaaccagtagttaagtttgggggagtcaaaagttttatgtggatttttgactgtgctgagatgggcactcctaaacccacattgtttaggagtcaactgTCTTTTTTAAATTTATAGAGCAGATAATGCAAAGTA-TGATGACCCCTA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21718831 521 + 198332218 ----CAGGgtcacctaggctggagtgcattgttgcaaatatagcttgctgcagcctcgacctcccgagctcaggtgatcctccttcccagcctcctgtgtagctgggaccacaggtgcatgccaac--------------------------atacagacagagtctcactttgttgcccaggctgttttcaaattcctgggctcaaacaatcctctggccttggcctcccaaagtgctaggattacaggcatgagacaccatgcccagccataattttcttaataacattttcttttctttagctaatttactgtaagaatacaacatttaatacatgtaacatacaaaagacatgttaatcaactgaatatattatcagtaagccttttggtcaacagcagacaaccagtagttaagtttgggggagtcaaaagttttatgtggatttttgactgtgctgagatgagcactcctaaacccacattgtttaggagtcaactgTCTTTTTTAAATTTATAGAGCAGATAATGCAAAGTA-TGATGACCCCTA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20329983 547 - 85365473 ----cagggtcacctaggctggagtgcaccgttgcaaacatagcttgctgcagcctcgatctcccgagctcaggcgatcctccttcccagcctcctgtgtagctgggaccacaggtgtgtgccaacgcacctggttaattcttttatattttgtaaggacagagtctcactttgttgcccaggctgttttcaaactcctgggctcaaacaatcctctggccttggcctcccaaagtgctgggattacaggcatgagccaccgtgcccagccataattttcttaataacattttcttttatttagctaatttactgtaagaatacaatatataatacatgtaacatacaaaatacatgttaatcaactgaatattttatcagtaagccttctggccaacagcagacaaccagcagttaagtttgggggagtcaaaagttttatgtggatttttgactgtgctgagatgggcactcctaaacccacattgtttaggagtcaactgTCTTTTTTAAATTTATAGGGCAGATAATGCAAAGTA-TGATGACCCCTA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16796796 546 + 184069350 ----CAGGgtcacctagactggagtgcattgttgcaaacatagcttgctgtagcctcgacctccagagctcaggcgataatcctgcccagcctcccgtgcacctgggaccacaggtgcaagccaacacacctga-taattattttatattttgtagatacagagtctcactttgttgcccaggctgttttcaaactcctgggctcaaacaatcctctggcctcggcctcccaaagtgccgggattacaggcatgagccaacatgcccagccataattttcttaataacattttcttttctctggctaatttactgtaagaacaccatatataatacatgtaacatacaaaatatgtgttaaccaactgaatattttatcagtaagccttctgatcaagagcagacaaccagtagttaattttgggggactcaaaagttttacgtggatttttgactgtgctgagacgggcacttctaaacacacattgtttaggagtcaactgTCTTTTTTAAATTTAGAGGGCAGATAATGCAAAGTA-TGACGAACTCTA i rheMac3.chr5 I 161 C 0 s macFas5.chr5 20846652 546 + 189454096 ----CAGGgtcacctagactggagtgcattgttgcaaacatagcttgctgtagcctcgacctccagagctcaggcgataatcctgcccagcctcccgtgcacctgggaccacaggtgtgagccaacacacctga-taattattttatattttgtagatacagagtctcactttgttgcccaggctgttttcaaactcctgggctcaaacaatcctctggcctcggcctcccaaagtgccgggattacaggcatgagccaacatgcccagccataattttcttaataacattttcttttctctggctaatttactgtaagaatacaatatataatacatgtaacatacaaaatatgtgttaaccaactgaatattttatcagtaagccttctgatcaacagcagacaaccagtagttaattttgggggactcaaaagttttacgtggatttttgactgtgctgagacgggcacttctaaacacacattgtttaggagtcaactgTCTTTTTTAAATTTAGAGGGCAGATAATGCAAAGTA-TGACGAACTCTA i macFas5.chr5 I 1 C 0 s papAnu2.chr5 16436902 547 + 178775436 ----cagggtcacctagactggagtgcattgtTGCAAACATAGCTtgctgtagcctcgacctccagagCTCAGGCGATAATCCTGCCCAGCCTCCCGTgcacctgggaccacaggtgcgagccaacacacctggctaattattttatattttgtagatacagagtctcactttgttgcccaggctgttttcaaactcctgggctcaaacaatcctctggcctcggcctcccaaagtgccaggattacaggcatgagccaacatgcccagccataattttcttaataacattttcttttctctggctaaTTTACTGTAAGaacacaatatataatacatgtaacatacaaaatatgtgttaaccaACTGAATATTTTATCAGTAAGCCTTCTGGTCAACAGCAGACAACCAGTAGTTaattttgggggagtcaaaagttttACGTGGATTTTTGACTGTGCTGAGATGGGCACTTCTAAACACACATTGTTTAGGAGTCAACTGTCTTTTCTAAATTTAGAGGGCAGATAATGCAAAGTA-TGACGAACCCTA i papAnu2.chr5 I 17 C 0 s chlSab2.chr27 19920156 547 - 48547382 ----CAGGgtcacctagactggagtgcattgttgcaaacatagtttgctgcagcctcgacctccagagctcaggcaataatcctgcccagcctcccgtgcacctggtatcacaggtgcgagccaacacacctggctaattattttatattttgtagatacagagtctcactttgttgcccaggctgttttcaaactcctgggctcaaacagtcctctggcctcagcctcccaaagtgccgggattacaggcatgagccaacatgcccagccataattttcttaataacattttcttttctctggctaatttaccgtaataatacaatatataatacatgtaacatacaaaatatgtgttaaccaactgactattttatcattaagccttctggtcaacagcagacaaccagtagttaattttgggggagtcaaaagttttacgtggatttttgactgtgctgagatgggcacttctaaacacacattgtttaggagtcaactgTCTTTTTTAAATTTAGAGGGCAGATAATGCAAAGTA-TGATGAACCCTA i chlSab2.chr27 I 5 C 0 s calJac3.chr3 21279785 542 - 190850796 cagacagggtaacgtaggctggagtacatttttgcaaacatagtttgctgcagcctcgacctcctgggctcaggcgatcctcctgtgcagcct-ctatgtagctgggaccacaggcataggccaacacacctggctaattcgtttatgttttgtagagatgtagtctctctttgttgcccatgctggtttcaaactcctgggttcaaacaatcctctaggctcggcctcccgaagtgctgggattacaggcatgagccaccatgcccagccataagtttcttaataacattttctttcct----ctaatttatggtcagaatacaatatgtaata-----aatatacaaaatacgtgttaatcaactgaatatgttataagtaaggcttctgctcaacagtagactaccagtagttaagtttgagggaatcaaaagttgtatgtaaatttttgactgtgctgagatgggcattcctaagcccacattgtttaagagtcaactgTAATTTTTAAATTTATAGGGGAGATAATCCAAATTACTGATGAACTCTA i calJac3.chr3 C 0 C 0 e mm10.chr5 49261863 68 + 151834684 I e canFam3.chr3 3853981 935 - 91889043 I a score=258013.000000 s hg38.chr4_KI270790v1_alt 155514 78 + 220246 TCATTAAAGAAGAAA--CTGAGGCACAAAGATGCCCACTCTAATAATTACATACCATTTTCTTTTTACTCCATTACCAAT s panTro4.chr4 21543627 78 + 193495092 TCATTAAAGAAGAAA--CTGAGGCACAAAGATGCCCACTCTAATAATTACATACCATTTTCTTTTTACTCCATTACCAAT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21719352 78 + 198332218 TCATTAAAGAAGAAA--CTGAGGCACAAAGATGCCCACTCTAATAATTATATACCATTTTCTTTTTACGCCATTACCAAT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20330530 78 - 85365473 TCATTAAAGAAGAAA--CTGAGGCACAAAGATGCCCACTCTAATTATTTTATACCATTTTCTTTTTACTCCATTACCAAT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16797342 78 + 184069350 TCATTAAAGGAGAAA--CTGAGGCATAAAGATGCCCACTCTAATAATTTTATACCATTTTCCTTTTACTCCATTACCAGT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20847198 78 + 189454096 TCATTAAAGGAGAAA--CTGAGGCATAAAGATGCCCACTCTAATAATtttataccattttccttttactccattaccagt i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16437449 78 + 178775436 TCAttaaaggagaaa--ctgaggcataaagatGCCCACTCTAATAATTTTATACCATTTTCCTTTTACTCCATTACCAGT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19920703 78 - 48547382 TCATTAAAGGAGAAA--CTGAGGCATAAAGATGCCCACTCTAATAATtttataccattttccttttactccattaccagt i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21280327 78 - 190850796 TCATTACAGAAGAAA--CTGAGGCATAATGATGCCCACTCTAATAATTTTATATCATTTCCTTTTTACTCCATTACCAAT i calJac3.chr3 C 0 C 0 s canFam3.chr3 3854916 78 - 91889043 TCACTGAGGAGGGAAGCATGAATCAGAAAGGTCAACTTTCATATGCATTTATATCATTTTACTTTTACTCCATTACCA-- i canFam3.chr3 I 935 C 0 e mm10.chr5 49261863 68 + 151834684 I a score=100056.000000 s hg38.chr4_KI270790v1_alt 155592 29 + 220246 TACCATAATCTTACCACTATTTGTTTGCT s panTro4.chr4 21543705 29 + 193495092 TACCATAATCTTACCACTATTTGTTTGCT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21719430 29 + 198332218 GACCATAATCTTACCACTATTTGTTTGCT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20330608 29 - 85365473 TACCATAATCTTACCACTATTTGTTTGCT i nomLeu3.chr20 C 0 I 311 s rheMac3.chr5 16797420 29 + 184069350 TACCATAATCTTACCACTACTTGTTTGCT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20847276 29 + 189454096 taccatAATCTTACCACTACTTGTTTGCT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16437527 29 + 178775436 TACCATAATCTTACCACTACTTGTTTGCT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19920781 29 - 48547382 taccatAATCTTACCACTACTTGTTTGCT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21280405 29 - 190850796 TACCATAATCTTACCATTACTTGTTTGCT i calJac3.chr3 C 0 C 0 s mm10.chr5 49261931 29 + 151834684 TGCTATAATTCTATTGCTCTTTTACTGCT i mm10.chr5 I 68 C 0 s canFam3.chr3 3854994 12 - 91889043 -----TCATCTT------------TTGCC i canFam3.chr3 C 0 C 0 a score=683003.000000 s hg38.chr4_KI270790v1_alt 155621 213 + 220246 ATGCACG-AGCT-TTTCATGAACATAAACACCAAGGCTG-AAAGCATTTGGGGTGAAATATAT-GTCCCCTCCT-CTGTTTG------------ATATTACTGAAAAAGAATCTATTTGGGAGAAGATGGAAA----TTTTCAAAGTAAAATGGGTGAACTGTTAGCAATGATAAAAATTATACCTATACCTTGGGAGACGGAAAGATTTTCATGACAACCTTATTTTAAATAA s panTro4.chr4 21543734 207 + 193495092 ATGCACG-AACT-TTTCATGAACATAAACACCAAGGCTG-AAACCATTTGGGGTGAAATATAT-GTCCCCTCCT-CTGTTTG------------ATATTACTGAAAAAGAATCTATTTGGGAGAAGATGGAAA----TTTTCAAAGTAAAATGGGTGAACTGTTAGCAATGGTAAAAAT------TATACCTTGGAAGACGTAAAGATTTTCATGACAACCTTATTTTAAATAA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21719459 213 + 198332218 ATGCACG-AACT-TTTCATGAACATAAACACCAAGGCTG-AAAGCATTTGGTATGAAATATAT-GTCCCCTCCT-CCGTTTG------------ATATTACTGAAAAAGAATCTATTTGGGAGAAGATGGAAA----TTTTCAAAGTAAAATGGGTGAACTGTTAGCAATGGTAAAAATTATACCTATACCTTGGAAGACATAAAGATTTTCATGACAACCTTATTTTAAATAa i ponAbe2.chr4 C 0 I 727 s nomLeu3.chr20 20330948 213 - 85365473 atgCAAG-AACT-TTTCAGGAACATAAACACCAAGGCTG-AAAGCATTTGGGGTGAAATGTAT-GTCCCCTCCT-CCGTTTG------------ATATTACTGAAAAAGAATCTATTTGGGAGAAGATGGCAA----TTTTCAAAGTAAAATGGGTGAACTCTTAGCAATGGTAAAAAGTATACCTATACCTTGGAAGACATAAAGATTTTTATGACAACCTTATTTTAAATAA i nomLeu3.chr20 I 311 C 0 s rheMac3.chr5 16797449 214 + 184069350 ATGCACG-AAAT-TTTCATGAACATAAATGCCAAGGCTG-AAAGCATTTGGGGTGAAATATAT-TTCCCCTTCTAATGTTTT------------ATATTACTGAAAAATAATCTATTTGGGAGAAGATGGAAA----TTTTCAAAGTAAAATGAGTGAACTGTTAGCAACTGTAAAAATTATACCTATACCTTGCAAGACATTAAGCTTTACATGACAACCTTATTTTAAATAA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20847305 214 + 189454096 ATGCACG-AAAT-TTTCATGAACATAAATGCCAAGGCTG-AAAGCATTTGGGGTGAAATATAT-TTCCCCTTCTAATGTTTT------------ATATTACTGAAAAATAATCTATTTGGGAGAAGATGGAAA----TTTTCAAAGTAAAATGAGTGAACTGTTAGCAACTGTAAAAATTATACCTATACCTTGCAAGACATTAAGCTTTACATGACAACCTTATTTTAAATAA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16437556 214 + 178775436 ATGCACG-AAAT-TTTCATGAACATAGACGCCAAGGCTG-AAAGCATTTGGGGTGAAATATAT-TTCCCCTTCTAATGTTTT------------ATATTactgaaaaataatgtatttgggAGAAGATGgaaa----ttttcaaagtaaaatgagTGAACTGTTAGCAACTGTAAAAATTATACCTATACCTTGCAAGACATTAAGCTTTACATGACaaccttattttaaataa i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19920810 214 - 48547382 ATGCACG-AAAT-TTTCATGAACATAAACGCCAAGGCTG-AAAGCATTTGGGGTGAAATATATATTCCCCTTCTAATGTTTT------------ATATTACTGAAAAATAATCTATTT-GGAGAAGATGGAAA----TTTTCAAAGTAAAATGAGTGAACTGTTAGCAACTGTAAAAATTATACCTATACCTTGCAAGACATTAAGCTTTACATGACAACCTTATTTTAAATAA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21280434 198 - 190850796 ATGCACGAAACT-TTTCATGAACATAAACACCAAGGCTG-AAAGTATTTGGGGTGAAATATAT-TTCCCCTTCT-CTGTTTG------------ATATTACTGAAAAAGAATATATTTGGGAG--------------------AAGTAAAATAGATGAACTGTTAGTAATTGTAAAAATTATACCTATACCTTGGAAGACATTAAGCTTTTCATGACAACCTTATTTTAAGTAA i calJac3.chr3 C 0 C 0 s mm10.chr5 49261960 200 + 151834684 ---CATG-AAATCCTTTATAAACATGAATGGCTAAGTTG-AAACTGTCTGATGTGAAATTCCT-TATCCACTTT-CTCTTCA------------AATTCATTTGAAAATTTTCATATTGGAATA--ATGGAGA----TTTTAAAAGTGAACC--ATGAGATATTAGCCATCAT-ACAATTATGCACATGCTTAGTTAAAC------TGTTTCTTGAAAATATCATTTTAAGTAA i mm10.chr5 C 0 C 0 s canFam3.chr3 3855006 227 - 91889043 AAGCAGGTAACT-TTTCATGAACCTAAACCCCACAGTTGAAAAGCATGTAGGGTGAAATCTCC-TCCttttttt-tttttttttttttAATTCCAGGTTACAGAAAAAGGATCTATTTGAGGAAAGATGGAGATTTTTTTTCAAAGTAAACTGCATGTGCTGTC----ACTGTGAAAATTATAGCTGTACCTTAAAAGATAGTAAACTTCTCATGACCACCTTATTTTAAATAA i canFam3.chr3 C 0 C 0 a score=744358.000000 s hg38.chr4_KI270790v1_alt 155834 228 + 220246 TTCTTAAGTTTACATTTTCTAATCTTCCATAAGC-ATATTTATCTATTCAGGAATATTTGTTAGTTTTTT--ATATAAAATACTCATAAATGATAGAA-------------------------AAATTAATTATCTTCGCTTAAGATTTGCTACCAAATTGAAAA-AGGCACATATCTGAAACGGGATGAGAAAGCAACACAACAAACATGTTTCCTAATGA-TGAAATACAACGTTGCTATTAAACTTAGAGAATAA s panTro4.chr4 21543941 228 + 193495092 TTCTTAAGTTTACATTTTCTAATCTTCCATAAGC-ATATTTATCTATTCAGGAATATTTGTTAGTTTTTT--ATATAAAATACTCATAAATGGTAGAA-------------------------AAATTAATTATCTTCACTTAAGATTTGCTACCAAATTGAAAA-AGGCACATATATGAAACGGGATGAGAAAGCAACACAACAAACATGTTTCCTAATGA-TGAAATACAACGTTGCTATTAAACTTAGAGAATAA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21720399 228 + 198332218 ttcttaaGTTTACATTTTCTAATCTTCCATAAGC-ATATTTATCCATTCAGGAATATTTGTTAGTTTTTT--ATATAAAATACTCATAAATGGTAGAA-------------------------AAATTAATTATCTTCACTTAAGATTTGCTACCAAATTGAAAA-AGGCACATATCTGAAACGGGATGAGAAAGCAACACACCAAACATATTTCCTAATGA-TGAAATATAACATTGCTATTAAACTTAGAGAATAA i ponAbe2.chr4 I 727 C 0 s nomLeu3.chr20 20331161 247 - 85365473 TTCTTAAGTTTACATTTTCTAATCTTCCATAAGC-ATATTTATCTATTCAGGAATATTTGTTAGTTTTTT--ATAGAAAATACTCATAATTGATAAAATTCCATTTT-TT--TAAAT---GGTAGAAAAATTATCTTCACTTAAGATTTGCTACCAAATTGAAAA-AGGCACATATCTGAAACAGGATGAGAAAGCAACACATCAAACATGTTTCCTAATGA-TGAAATATAACATTATTATTAAACTTAGAGAATAA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16797663 250 + 184069350 TTCTTAAGTTTACATTTTCTAATCTTCCATAAGCTACATTTATCTATTCAGGAATATTTGTTAG-TTTTT--AAATAAGATACTCATAATTGATAAAATTCCATTTT-TT--AAATGGTAGAAAAATTAATTATCTTTGCTTAAGATTTGCTAACAAATTGAAAA-AGGCACATATCTGAAACTCAATGAGAAAGCAACACATCAAACATACTTCCTAATAA-TGAAATATAACATTGCTATTAAACTTAGAGAATGA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20847519 250 + 189454096 TTCTTAAGTTTACATTTTCTAATCTTCCATAAGCTACATTTATCTATTCAGGAATATTTGTTAG-TTTTT--AAATAAGATACTCATAATTGATAAAATTCCATTTT-TT--AAATGGTAGAAAAATTAATTATCTTTGCTTAAGATTTGCTAACAAATTGAAAA-AGGCACATATCTGAAACGCAATGAGAAAGCAACACATCAAACATACTTCCTAATAA-TGAAATATAACATTGCTATTAAACTTAGAGAATGA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16437770 250 + 178775436 ttcttaagtTTACATTTTCTAATCTTCCATAAGCTACATTTATCTATTCAGGAatatttgttag-ttttt--aaataagataCTCATAATtgataaaattccatttt-tt--aaatggtagaaaAATTAATTATCTTTGCTTAAGATTTGCTAACAAATTGAAAA-AGGCACATATCTGAAACGCAATGAGAAAGCAACACATCAAACATACTTCCTAATAA-TGAAATATAACATTGGTATTAAACTTAGAGAACGA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19921024 249 - 48547382 TTCTTAAGTTTACATTTTCTAATCTTCCATAAGC-ACGTTTATCTATTCAGGAATATTTGTTAG-TTTTT--AAATAAGATACTCATAATTGATAAAATTCCATTTT-TT--AAATGGTAGAAAAATTAATTATCTTTGCTTAAACTTTGCTAACAAATTGAAAA-AGGCACGTATCTGAAATGCAATGAGAAAGCAACACATCAAACATACTTCCTAATGA-TGAAATATAACATTGCTATTAAACTTAGAGAATGA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21280632 250 - 190850796 TTCTTAAGCTTAAGTTTTCTAATCTTCCATAAGG-ATATTTATCTATTTAAGAATATTTGTTAGTTTTTTTAATATACAATACTCATAATAGATAAAATTCCAGTTT-TTTAAAATGGTAGAAA----AATTATCTTTCCCTAAGATTTGCTACCAAGTTGAAAA-AGACGCATATCTAAAACGGGATGAGAAAGCAACACATCAAACATATTTCCTAGTGA-GGAAATATAACACTGCTATTAAATTTAGAGAATAA i calJac3.chr3 C 0 C 0 s mm10.chr5 49262160 226 + 151834684 TCCTTATGTATAAATCTTTGCCTTTCTCATAAAA----------------AAAAACTGTGCTAAACTCTT----------TCCTCAGAACTGATAACATACCTATTT-TT--CAAGCATCGAAAAAT--ATTATATATACATAAGATTTGTTCTTTGACTGAAAACAGACATATATGTAACATG-AAGAAAAAAACACCACACCAAAGTTACTTTATAAAGCTTGAAGTATAGTATTAGCATTATACTTGGATAACAA i mm10.chr5 C 0 I 87 s canFam3.chr3 3855233 246 - 91889043 TTCTTAAATGTAAATCCTCTAATCCTTCATGATA-GCATTTGCCTATGCTGAAATACCTGTTAGTTTTTT----GTAAAATATGCATAACTGATAAGATTCTATCTTACT--GATTGGTAGAAAAAT--AATACCCTCACTTAGGATTTGTGACCAATCTGAACA-AGTCACACATCTGAAATGGGATGAG-AATCAACACATCAGATGTATTTCTGAATGT-TTAACTGTAACATCTCCATTAAATTTGGAGAAGAA i canFam3.chr3 C 0 C 0 a score=13892.000000 s hg38.chr4_KI270790v1_alt 156062 4 + 220246 AAAC s panTro4.chr4 21544169 4 + 193495092 AAAC i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21720627 4 + 198332218 AAAC i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20331408 4 - 85365473 AAAC i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16797913 4 + 184069350 AAAC i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20847769 4 + 189454096 AAAC i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16438020 4 + 178775436 AAAC i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19921273 4 - 48547382 AAAC i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21280882 4 - 190850796 AAGC i calJac3.chr3 C 0 C 0 s canFam3.chr3 3855479 4 - 91889043 AATC i canFam3.chr3 C 0 C 0 e mm10.chr5 49262386 87 + 151834684 I a score=97.000000 s hg38.chr4_KI270790v1_alt 156066 6 + 220246 AATCgc s canFam3.chr3 3855483 6 - 91889043 TATCAT i canFam3.chr3 C 0 C 0 e mm10.chr5 49262386 87 + 151834684 I e chlSab2.chr27 19921277 0 - 48547382 C e macFas5.chr5 20847773 0 + 189454096 C e rheMac3.chr5 16797917 0 + 184069350 C e calJac3.chr3 21280886 0 - 190850796 C e papAnu2.chr5 16438024 0 + 178775436 C e nomLeu3.chr20 20331412 0 - 85365473 C e ponAbe2.chr4 21720631 0 + 198332218 C e panTro4.chr4 21544173 0 + 193495092 C a score=0.000000 s hg38.chr4_KI270790v1_alt 156072 343 + 220246 agccataaaaaatgatgagttcatggcctttgtagggacatggatgaaattggaaatcatcattctcagtaaactatcgcaagaacaaaaaaccaaacactgcatatcctcactcataggtgggaattgaacaatgagatcacatggacacaggaaggggaatatcacactctggggactgtggtggggtcgggggaggggggagggatagcattgggagatatacctaatgctagatgacgagttagtgagtgcagcgcaccagcatggcacatgtatacatatgtaactaacctgcacaatgtgcacatgtaccctaaaacttaaagtataataaaaaaaa e mm10.chr5 49262386 87 + 151834684 I e chlSab2.chr27 19921277 0 - 48547382 C e macFas5.chr5 20847773 0 + 189454096 C e rheMac3.chr5 16797917 0 + 184069350 C e calJac3.chr3 21280886 0 - 190850796 C e canFam3.chr3 3855489 0 - 91889043 C e papAnu2.chr5 16438024 0 + 178775436 C e nomLeu3.chr20 20331412 0 - 85365473 C e ponAbe2.chr4 21720631 0 + 198332218 C e panTro4.chr4 21544173 0 + 193495092 C a score=32684.000000 s hg38.chr4_KI270790v1_alt 156415 10 + 220246 aaTCGATCAT s panTro4.chr4 21544173 10 + 193495092 AATCGATCAT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21720631 10 + 198332218 AATCGATCAT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20331412 10 - 85365473 AATCGATCAT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16797917 10 + 184069350 AATTGATCAT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20847773 10 + 189454096 AATCGATCAT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16438024 10 + 178775436 AATCGATCAT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19921277 10 - 48547382 AATCGATCAT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21280886 10 - 190850796 AATCGATCAT i calJac3.chr3 C 0 C 0 e mm10.chr5 49262386 87 + 151834684 I e canFam3.chr3 3855489 0 - 91889043 C a score=210906.000000 s hg38.chr4_KI270790v1_alt 156425 62 + 220246 ATTGAAGTTCAGTTTTGTACTTTAACACCATCTGGTAAAAT-TACAGACAGAATCTAAAAAAT s panTro4.chr4 21544183 62 + 193495092 ATTGAACTTCAGTTTTGTACTTTAACACCATCTGGTAAAAT-TACAGACAGAATCTAAAAAAT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21720641 62 + 198332218 ATTGAACTTCAATTTTGTACTTTAACACCATCTGGTAAAAT-TACAGACAGAATCTAAAAAAT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20331422 62 - 85365473 ATTCAACTTCAATTTTGTACTTTAACACCATCTGGTAAAAT-TACAGACAGAATCTAAAACTC i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16797927 62 + 184069350 ATTGAACTTCAATTTTGTACTTTAACACCATCTGGTAAAAT-TACAGACAGAATCTAAAAAAT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20847783 62 + 189454096 ATTGAACTTCAATTTTGTACTTTAACACCATCTGGTAAAAT-TACAGACAGAATCTAAAAAAT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16438034 62 + 178775436 ATTGAACTTCAATTTTGTACTTTAACACCATCTGGTAAAGT-TACAGACAGAATCTAAAAAAT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19921287 62 - 48547382 ATTGAACTTCAATTTTGTATTTTAACACCATCTAGTAAAAT-TACAGACAGAATCTAAAAAAT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21280896 62 - 190850796 ACTGAACTTCAATGCTGTACTTTAACACCATCTGGTAAAAT-AACAGACAGAACCTAAACAAT i calJac3.chr3 C 0 C 0 s canFam3.chr3 3855489 63 - 91889043 ATTTAATTTAAATTTTGCACCTGGACTCCATCTGATAAAATAAATACACAGAATCTTATGAAT i canFam3.chr3 C 0 I 2 e mm10.chr5 49262386 87 + 151834684 I a score=36620.000000 s hg38.chr4_KI270790v1_alt 156487 12 + 220246 ATATGAGTAAAC s panTro4.chr4 21544245 12 + 193495092 ATATGAGTAAAC i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21720703 12 + 198332218 ATATGAGTAAAC i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20331484 12 - 85365473 GTATGAGTAAAC i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16797989 12 + 184069350 ATATGAGTAAAC i rheMac3.chr5 C 0 I 10 s macFas5.chr5 20847845 12 + 189454096 ATATGAGTAAAC i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16438096 12 + 178775436 ATAtgagtaaac i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19921349 12 - 48547382 ATATGAGTAAAC i chlSab2.chr27 C 0 I 10 s calJac3.chr3 21280958 12 - 190850796 ACATGAGTAAAA i calJac3.chr3 C 0 C 0 e mm10.chr5 49262386 87 + 151834684 I e canFam3.chr3 3855552 2 - 91889043 I a score=-3170.000000 s hg38.chr4_KI270790v1_alt 156499 1 + 220246 -C s panTro4.chr4 21544257 1 + 193495092 -C i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21720715 1 + 198332218 -t i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20331496 1 - 85365473 -A i nomLeu3.chr20 C 0 C 0 s macFas5.chr5 20847857 1 + 189454096 -T i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16438108 1 + 178775436 -t i papAnu2.chr5 C 0 C 0 s calJac3.chr3 21280970 1 - 190850796 G- i calJac3.chr3 C 0 I 2 e mm10.chr5 49262386 87 + 151834684 I e chlSab2.chr27 19921361 10 - 48547382 I e rheMac3.chr5 16798001 10 + 184069350 I e canFam3.chr3 3855552 2 - 91889043 I a score=2730.000000 s hg38.chr4_KI270790v1_alt 156500 2 + 220246 tt s panTro4.chr4 21544258 2 + 193495092 tt i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21720716 2 + 198332218 tt i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20331497 2 - 85365473 TT i nomLeu3.chr20 C 0 C 0 s macFas5.chr5 20847858 2 + 189454096 TT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16438109 2 + 178775436 tt i papAnu2.chr5 C 0 C 0 e mm10.chr5 49262386 87 + 151834684 I e chlSab2.chr27 19921361 10 - 48547382 I e rheMac3.chr5 16798001 10 + 184069350 I e calJac3.chr3 21280971 2 - 190850796 I e canFam3.chr3 3855552 2 - 91889043 I a score=1818.000000 s hg38.chr4_KI270790v1_alt 156502 4 + 220246 ttct s panTro4.chr4 21544260 4 + 193495092 tttt i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21720718 4 + 198332218 tttt i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20331499 4 - 85365473 TTTT i nomLeu3.chr20 C 0 I 3 e mm10.chr5 49262386 87 + 151834684 I e chlSab2.chr27 19921361 10 - 48547382 I e macFas5.chr5 20847860 0 + 189454096 C e rheMac3.chr5 16798001 10 + 184069350 I e calJac3.chr3 21280971 2 - 190850796 I e canFam3.chr3 3855552 2 - 91889043 I e papAnu2.chr5 16438111 0 + 178775436 C a score=73614.000000 s hg38.chr4_KI270790v1_alt 156506 289 + 220246 ttt---------g-agatggagtcttgctctgtcgcccaggctggagtgcagtggcgcgatcttggctcactgcaagctccgcctcccgggttcaggccattctcctgcctcagcctcccgagtagctgggactacaggtgcctgcaaccacgcccggcttatttttttgtatttttagtagagacggggtttcactgtgttagccaggacggtctcgatctcctgacctcgtgatccgcccgcctcggcctcccaaagtgctgggattacaggtgtgagccaccgcgccgggcTGAGT s panTro4.chr4 21544264 298 + 193495092 ttttttttttttg-agatggagtcttgctctgtcgcccaggctggagtgcagtggcgcgatctcggctcactgcaagctccgcctccgaggttcaggccattctcctgcctcagcctcccgagtagctgggactacaggtgcctgcaaccacgcccggctaatttttttgtatttttagtagagacggggtttcactgtgttagccaggacggtctcgatctcctgacctcgtgatccgcccgcctcggcctcccaaagtgttgggattacaggcgtgagccaccgcgccgggccGAGT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21720722 298 + 198332218 ttttttttttttgcagacagagtcttgctctgtcgcccaggctggagtgcagtggcgcgatctcggctcactgcaagctgcgcctcccggg-tcagtccattctcctgcctcagcctcctgagtagctgggattacaggtgcctgcaaccacgcctggctaatttttttgtgttttcagtagagacggggtttcactgtgttagccaggacgttctccatctcctgacctcgtgatccgcccgcctcagcttcccaaagtgctgggattacaggcgtgagccaccgctgccggctGAGT i ponAbe2.chr4 C 0 C 0 e mm10.chr5 49262386 87 + 151834684 I e chlSab2.chr27 19921361 10 - 48547382 I e macFas5.chr5 20847860 0 + 189454096 C e rheMac3.chr5 16798001 10 + 184069350 I e calJac3.chr3 21280971 2 - 190850796 I e canFam3.chr3 3855552 2 - 91889043 I e papAnu2.chr5 16438111 0 + 178775436 C e nomLeu3.chr20 20331503 3 - 85365473 I a score=4101.000000 s hg38.chr4_KI270790v1_alt 156795 11 + 220246 AAACTTTTTTT s panTro4.chr4 21544562 11 + 193495092 AAACTTTTTTT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21721020 11 + 198332218 AAACTTTTTTT i ponAbe2.chr4 C 0 C 0 s canFam3.chr3 3855554 11 - 91889043 AAAGTTTTTAA i canFam3.chr3 I 2 C 0 e mm10.chr5 49262386 87 + 151834684 I e chlSab2.chr27 19921361 10 - 48547382 I e macFas5.chr5 20847860 0 + 189454096 C e rheMac3.chr5 16798001 10 + 184069350 I e calJac3.chr3 21280971 2 - 190850796 I e papAnu2.chr5 16438111 0 + 178775436 C e nomLeu3.chr20 20331503 3 - 85365473 I a score=-954.000000 s hg38.chr4_KI270790v1_alt 156806 7 + 220246 --TTTTTTT s panTro4.chr4 21544573 5 + 193495092 --TAAAA-- i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21721031 5 + 198332218 --TTTTT-- i ponAbe2.chr4 C 0 C 0 s calJac3.chr3 21280973 5 - 190850796 --TTTTT-- i calJac3.chr3 I 2 C 0 s canFam3.chr3 3855565 7 - 91889043 CATTTTT-- i canFam3.chr3 C 0 C 0 e mm10.chr5 49262386 87 + 151834684 I e chlSab2.chr27 19921361 10 - 48547382 I e macFas5.chr5 20847860 0 + 189454096 C e rheMac3.chr5 16798001 10 + 184069350 I e papAnu2.chr5 16438111 0 + 178775436 C e nomLeu3.chr20 20331503 3 - 85365473 I a score=5733.000000 s hg38.chr4_KI270790v1_alt 156813 3 + 220246 AAA s panTro4.chr4 21544578 3 + 193495092 AAA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21721036 3 + 198332218 AAA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20331506 3 - 85365473 AAA i nomLeu3.chr20 I 3 C 0 s macFas5.chr5 20847860 3 + 189454096 AAA i macFas5.chr5 C 0 I 4 s papAnu2.chr5 16438111 3 + 178775436 aaa i papAnu2.chr5 C 0 I 4 s calJac3.chr3 21280978 3 - 190850796 AAA i calJac3.chr3 C 0 I 2 e mm10.chr5 49262386 87 + 151834684 I e chlSab2.chr27 19921361 10 - 48547382 I e rheMac3.chr5 16798001 10 + 184069350 I e canFam3.chr3 3855572 0 - 91889043 C a score=3902561.000000 s hg38.chr4_KI270790v1_alt 156816 1048 + 220246 TTAATAACTTGTTATG---TTTTCCACTGGTTTAATCATTCTCT-----------------------------------------------------TTCTTTTAATAAAATTGAAGTAAAAATG----ACTTAGTGTCGTTTTGTTTCTGCTGTGTTT-CTACAGGTCATATTCAGAGTTGACTGAGCACCATAAGTGTTCAGCCGACTTTGATTTTATTTTTATCGCATGCCTCATAAAACTGATTTAGAAACCTAAAAATGTGTCACTAAAATATTAAATTGTGAACAGTCAGAGCTTATTGAGTTTCCAAAATCTAACAAGAATGGCTGGCTATGAAGGCAAACAAACATTCTTCAAATGTAGCCAGCCACA----------------------------------------------------TTTTAAAA-------------------ACTATTGGAGGGATCTTGAAGATTCAGAAGTG-TATGATTGATAC-CATGCCAA-ATTTTCAGAA-CCAGTAGTCTGTTTTTGGAAGACTTCTCC---TGCATGGATGCCTAGTAATATTCCCATCATAAAGTGGTTTAGCTCCATTTTAAAATTATAGGGGAGGCCTAGTACATTTGGAGAAAATTTCCATCCATTGGCATTTTTACATTTAATTTCCACACAGGcatctttcttacattatctctgcttcacagaatcttcatcacatttcaactgtcatcagaatccagtttttctcttggctatatacttcatcattttcctcttgctgttaatgggttgatatgattgattgATGGAGCCCCTATTCTGAGAACATGTTACTCAGACTCAGGGGTATTAGGATGCTTTGAGCTGTATGTCACAGTAGCA-CCCGAAACCTATGCTGAAGTGCCCACGTTGGAGG--AAAACTAAATCCTAACGGCTTGCAAGAATAAATGCTCATTTTA-------AATGA-------------------CCAGTGATTCCAAGGAAAAAAGTTAGATACCCAAAAAATTGAATTCCTCCCCAGCAATGCCCCTTC-ACTTAAAGGTCTGGGTTCAAGCAAACGCATCCCACTAGAACCCAGTCCTGAACTTTGAAGTAAATG-AACAAATGCTCCTGGATGTATGAAGGCCCCAGCAGTAAAGCTGAGCACTTCATAGA--CTCTCTCTTAGAGCCTGATTGATGCTTA s panTro4.chr4 21544581 1046 + 193495092 TTAGTAACTTGTTATG---TTTTCCACTGGTTTAATTATTCT-------------------------------------------------------TTCTTTTAATAAAATTGAAGTAAAAATG----ACTTAGTGTCCTTTTGTTTCTGCTGTGTTT-CTACAGGTCATATTCAGAGTTGACTGAGCACCATAAGTGTTCAGCCGACTTTGATTTTATTTTTATCGCATGCCTTATAAAACTGATTTAGAAACCTAAAAATGTGTCACTAAAATATTAAATTGTGAACAGTCAGAGCTTATTGAGTTTCCAAAATCTAACAAGAATGGCTGGCTATGAAGGCAAACAAACATTCTTCAAATGTAGTCAGCCACA----------------------------------------------------TTTTAAAA-------------------ACTATCGGAGGGATCTTGAAGATTCAGAAGTG-TATGATTGATAC-CATGCCAA-ATTTTCAGAA-CCAGTAGTCTGTTTTTGGAAGACTTCTCC---TGCATGGATGCCTAGTAATATTCCCATCATAAAGCGGTTTAGCTCCATTTTAAAATTATAGGGGAGGCCTAGTACATTTGGAGAAAATTTCCATCCATTGGCATGTTTACATTTAATTTCTACACAGGCATCTTTCTTACATTATCTCTGCTTCACAGAATCTTCATCACATTTCAACTGTCATCAGAATCCAGTTTTACTCTTGGCTATATACTTCATCATTTTCCTCTTGCTGTTAATGGGTCAATATGATTGATTGATGGAGCCCCTATTCTGAGAACATCTTACTCAGACTCAGGGGTATTAGGATGCTTTGAGCTGTATGTCACAGTAGCA-CCCGAAACCTATGCTGAAGTGCCCACGTTGGAGG--AAAACTAAATCCTAACAGCTTGCAAGAATAAATACTCATTTTA-------AATGA-------------------CCAGTGATTCCAAGGAAAAAAGTTAGATACCCACAAAATTGAATTCCTCCCCAGCAATGCCCCTTC-ACTTAAAGATCTGAGTTCAAGCAAACGCATCCCACTAGAACCCAGTCCTGAACTTTGAAGTAAATG-AACAAATGCTCCTGGATGTATGAAGGCCCCAGCAGTAAAGCTGAGCACTTCATAGA--CTCTCTCTTAGAGCCTGATTGATGCTTA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21721039 1050 + 198332218 TTAGTAACTTGTTATG---TTTTCCACTGGTTTAATCATTCTCT-----------------------------------------------------TTCTTTTAATAAAATTGAAGTAAAAATG----ACTTAGTGTCGTTTCGTTTCTGCTGTGTTT-CTACAGGTCATATTCAGAGTTGACTGAGCACCATAAGTGTTCAGCCGACTTTGATTTTATTTTTATCGCATGCCTCATAAAACTGATTTAGAAACCTAAAAATGTGTCACTAAAATATTAAATTGTGAACAGTCAGAGCTTATTGAGTTTCCAAAATCTAACAAGAATGGCTGGCTATGAAGGCAAACAAACATTCTTCAAATGTAGCCAGCCACA----------------------------------------------------TTTTAAAA-------------------ACTATTGGAGGGATCTTGAAGATTCAGAAGTG-TATGATTGATAC-CGTGCCAA-ATTTTCAGAA-CCAGTAGTCTGTTTTTGGAAGACTTCTCC---TGCATGGATGCCTAGTAATATTCCCATCATAAAGCGGGTTAGCTCCATTTTAAAATTATAGGGGAGGCCTAATACATTTGGAGAAAATTTCCATCCATTGGCATGTTTACATTTAATTTCTACACAGGCATCTTTCGTACATTATCTCTGCTTCACAGAATCTTCATCACATTTCAACTGTCATCAGAATCCGGTTTTTCTCTTGGCTATATACTTCATCATTTTCCTCTTGCTGTTAATGGGTCGATATGATTGATTGATGGAGCCCCTATTTTGAGAACACGTTACTCAGACTCAGGGGTATTAGGATGCTTTGGGCTGTATGTCACAGTAGCA-CCCGAAACCTATGCTGAAATGCCCACGTTGGAGG--AAAACTAAATCCTAACGGCTTGCAAGAATAAATACTCATTTTA-------AATGA-------------------CCAGTGATTCCAAGGAAAAAAGTTAGATACCCACAAAATTGAATTCCTTCCCAGCAGTGCCCCTTC-ACTTAAAGGTCTGAGTTCAAGCAAATGCGTCCCTCTAGAACCCAGTCCTGAACATTGAAGTAAATG-AACAAATGCTCCTGGAAGTACGAAGGCCCCAGCAGTAAAGCTGAGCACTTCATAGACTCTCTCTCTTAGAGCCTGATTGATGCTTA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20331509 1096 - 85365473 TTAGTAACTTGTTATG---TTTTCCACTGGTTTAATCATTCTTTCtttttttttttttttttttttttttttttgagacggagtcttgctctgttgccTCTTTTAATAAAATTGAAGT-AAAGTG----ACTTAGTGTCGTTTTGTTTCTGCTGTGTTT-CTACAGGTCATATTCAGAGTTGACTGAGCACCGTAAGTGTTCAGCCGACTTTGATTTTATTTTTATCGCATGCCTCATAAAACTGATTTAGAAACCTAAAAATGTGTCACTAAAATATTAAATTGTGAACAGTCAGAGCTTATTGAGTTTCCAAAATCTAACAAGAATGGCTGGCTATGAAGGCAAACAAACATTCTTCAAATGTAGCCAGCCACA----------------------------------------------------TTTTAAAA-------------------ACTACTGGAGGGATCTTGAAGATTCAGAAGTG-CATGATTGATAC-CATGCCAA-ATTTTCAGAA-CCAGTAGTCTGTTTTTGGAAGACTTCTCC---TGCATGGATGCCTAGTAATATTCCCATCATAAAGCGGTTTAGCTCCATTTTAAAATTATAGGGGAGGCCTAGTACATTTAGAGAAAATTTCCATCCATTAGCATGTTTACAATTAATTTCTACACAGGCATCTTTCTTACATTATCTCTGCTTCACAGAATCTTCATCACATTTCAACTGTCATCAGAATCCAGTTTTTCTCTTGGCTATATACTTCATCATTTTCCTCTTGCTGTTAATGGGTCGATATGATTGATTGATGGAGCCCCTATTCTGAGAACATGTTACTGAGACTCAGGGGTATTAGGATGCTTTGAGCTGTATGTCACAGTAGCA-CCCGAAACCTATGCTGAAATGCCCACATTGGAGG--AAAACTAAATCCTAATGGCTTGCAAGAATAAATACTCATTTTA-------AATGA-------------------CCAATGATTCCAAGGAAAAAAGTTAGATACCCACAAAATTGAATTCCTCTCCAGCAATGCCCCTTC-ACTTAAAGGTCTGAGTTCAAGCAAACGCATCCCACTAGAACCCAGCTCTGAACATTGAAGTAAATG-AACAAATGCTCCTGGATGTATGAAGGCCCCAGCAGTAAAGCTGAGC----CATAGA--CTGTCTCTGAGAGCCTGATTGATGCTTA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16798011 1099 + 184069350 TTAGTAACGTGTTACG---TTTTCCACTGGTTTAATCATTCTCT-----------------------------------------------------TTCTTTTAATAAAATTGAAGTAAAAATG----ACTTAGTGTCGTTTTGTTTCTGCTGTGTTT-CTACAGGTCATATTCAGAGTTGACTGAGCACCATAAGTGTTCAGCCGACTTTGATTTTATTTTTATCACATGCCTCATAAAACTGATTTAGAAACCCAGAAATGTGTCACTAAAATATTAAATTGTGAACAGTCAGAGCTTATTGAGTTTCCAAAATCTAACAAGAATGGCCGGCTATGAAGGCAAACAAACATTCTTCAAATGTAGCCAGTCACATTTTACCCGCAAAGTTGGCATATTAAAACAGCAAACATTGATCTCACAAGAGTTTTGAAA-------------------ACTCTTGGAGGGGTCCTGAAGATTCGGAAGTG-CATGACTGACGC-CATGCCCA-ATTTTCAGAA-CCAGTAGTCTGTTTCTGGAAGACTTCTCC---TGCATGGATGCCTAGTAATATTCCCATCATAAAGCAGTTTGGCTCCATTTTAAAATTATAGGGGAAGCCTTGTAAATTTGGAGAAAATTTCCATCCATTGGCATGTTTACAGTTAATTTCTACACAGGCATCTTTCTTATATTATCTCTGCCTCACAGAATCTTCATCACATTTCAACTGTCATCAGAATCCAGTTTTTCTCTTGGCTATATACTTCATCATTTTCCTCTTGCTGTTAATGGGTCGATATGATTGATTGATGGGGTCTCTATTCTGAGAACATGTTACTCAGACTGAGGAGTATTACGATGCTTTGAGCTGTGTGTCACAGTGGCA-CCCGAAACCTATGCTGAAATGCTCACGTTGGAGG--AAAACTAAATCCTAATGGCTTGCAAGAATAAATACTCTTTTTA-------AATGA-------------------CCAGTGATTCCAAAGAAAAAAGTTAGATACCCATAAAATTGAATTCCTTCCCAGCAATGCCCCTTC-ACTTAAAGGTCTGAGTTCAACCAAATGCATCCCACTAGAACCCAGTCCTGAACATTGAAGTAAATG-AACAAATGCTCCTGGATGTATGAAGGCCCCAGCAGTAAAG-TGAGCACTTAATAGA--CTCTCTCTTAGAGCCTGATTGATGCTTA i rheMac3.chr5 I 10 C 0 s macFas5.chr5 20847867 1099 + 189454096 TTAGTAACGTGTTACG---TTTTCCACTGGTTTAATCATTCTCT-----------------------------------------------------TTCTTTTAATAAAATTGAAGTAAAAATG----ACTTAGTGTCGTTTTGTTTCTGCTGTGTTT-CTACAGGTCATATTCAGAGTTGACTGAGCACCATAAGTGTTCAGCCGACTTTGATTTTATTTTTATCACATGCCTCATAAAACTGATTTAGAAACCCAGAAATGTGTCACTAAAATATTAAATTGTGAACAGTCAGAGCTTATTGAGTTTCCAAAATCTAACAAGAATGGCCGGCTATGAAGGCAAACAAACATTCTTCAAATGTAGCCAGTCACATTTTACCCGCAAAGTTGGCATATTAAAACAGCAAACATTGATCTCACAAGAGTTTTGAAA-------------------ACTCTTGGAGGGGTCCTGAAGATTCGGAAGTG-CATGACTGACGC-CATGCCCA-ATTTTCAGAA-CCAGTAGTCTGTTTCTGGAAGACTTCTCC---TGCATGGATGCCTAGTAATATTCCCATCATAAAGCAGTTTGGCTCCATTTTAAAATTATAGGGGAAGCCTTGTAAATTTGGAGAAAATTTCCATCCATTGGCATGTTTACAGTTAATTTCTACACAGGCATCTTTCTTATATTATCTCTGCCTCACAGAATCTTCATCACATTTCAACTGTCATCAGAATCCAGTTTTTCTCTTGGCTATATACTTCATCATTTTCCTCTTGCTGTTAATGGGTCGATATGATTGATTGATGGGGTCTCTATTCTGAGAACATGTTACTCAGACTGAGGAGTATTACGATGCTTTGAGCTGTGTGTCACAGTGGCA-CCCGAAACCTATGCTGAAATGCTCACGTTGGAGG--AAAACTAAATCCTAATGGCTTGCAAGAATAAATACTCTTTTTA-------AATGA-------------------CCAGTGATTCCAAGGAAAAAAGTTAGATACCCATAAAATTGAATTCCTCCCCAGCAATGCCCCTTC-ACTTAAAGGTCTGAGTTCAACCAAATGCATCCCACTAGAACCCAGTCCTGAACATTGAAGTAAATG-AACAAATGCTCCTGGATGTATGAAGGCCCCAGCAGTAAAG-TGAGCACTTAATAGA--CTCTCTCTTAGAGCCTGATTGATGCTTA i macFas5.chr5 I 4 C 0 s papAnu2.chr5 16438118 1047 + 178775436 ttagtaacGTGTTACG---TTTTCCACTGGTTtaatcattctct-----------------------------------------------------ttcttttaataaaattgaagTAAAGATG----ACTTAGTGTCGTTTTGTTTCTGCTGTGTTT-CTACAGGTCATATTCAGAGTTGACTGAGCACCATAAGTGCTCAGCcgactttgattttatttttatcacatgCCTCATAAAACTGATTTAGAAACCCAGAAATGTGTcactaaaatattaaattgtgAACAGTCAGAGCTTATTGAGTTTCCAAAATCTAACAAGAATGGCTGGCTATGAAGGCAAACAAACATTCTTCAAATGTAGCCAGTCACA----------------------------------------------------TTTTGAAA-------------------ACTCTTGGAGGGGTCCTGAAGACTCGGAAGTG-CGTGACTGACGC-CATGCCAA-ATTTTCAGAA-CCAGTGGTCTGTTTCTGGATGACTTCTCC---TGCATGGATGCCTAGTAATATTCCCATCGTAAAGCAGTTTGgctccattttaaaattatagggGAAGCCTTGTAAATTTGGAGAAAATTTCCATCCATTGGCATGTTTACAGTTAATTTCTACACAGGCATCTTTCTTATATTATCTCTGCCTCACAGAATCTTCATTACATTTCAACTGTCATCAGAATCCAGTTTTTCTCTTGGCTATATACTTCATCATTTTCCTCTTGCTGTTAATGGGTCGATATGATTGATTGATGGAGTCTCTATTCTGAGAACATGTTACTCAGACTGAGGAGTATTACGATGCTTTGAGCTCTGTGTCACAGTGGCA-CCCGAAACCTATGCTGAAATGCTCACGTTGGAGG--AAAACTAAATCCTAATGGCTTGCAAGAATAAATACTCTTTTTA-------AATGA-------------------CCAGTGATTCCAAGGAAAAAAGTTAGATACCCATAAAATTGAATTCCTCCCCAGCAATGCCCCTTC-ACTTAAAGGTCTGAGTTCAACCAAATGCATCCCACTAGAACCCAGTCCTGAACATTGAAGTAAATG-AACAAATGCTCCTGGATGTATGAAGGCCCCAGCAGTAAAG-TGAGCACTTAATAGA--CTCTCTCTTAGAGCCTGATTGATGCTTA i papAnu2.chr5 I 4 C 0 s chlSab2.chr27 19921371 1047 - 48547382 TTAGTAACGTGTTACG---TTTTCCACTGGTTTAATCATTCTCT-----------------------------------------------------TTCTTTTAATAAAATTGAAGTAAAAATG----ACTTAGTGTCGTTTTGTTTCTGCTGTGTTT-CTACAGGTCATATTCAGAGTTGACTGAGCACCATAAGTGTTCAGCCGACTTTGATTTTATTTTTATCACATGCCTCATAAAACTGATTTAGAAACCCAGAAATGTGTCACTAAAATATTAAATTGTGACCAGTCAGAGCTTATTGAGTTTCCAAAATCTAACAAGAATGGCTGGCTATGAAGGCAAACAAACATTCTTCAAATGTAGCCAGTCACA----------------------------------------------------TTTTGAAA-------------------ACTCTTGGAGGGGTCCTGAAGATTCGGAAGTG-CATGACTGATGC-CATGCCAA-ATTTTCAGAA-CCAGTAGTCTGTTTCTGGAAGACTTCTCC---TGCATGGATGCCTGGTAATATTCCCATCATAAAGCAGTTTGGCTCCATTTTAAAATTATAGGGGAAGCCTTGTAAATTTGGAGAAAATTTCCATCCATTGGCATGTTTACAGTTAATTTCTACACAGGCATCTTTCTTATATTATCTCTGCCTCACAGAATCTTCATCACATTTCAACTGTCATCAGAATCCAGTTTTTCTCTTGGCTATTTACTTCATCATTTTCCTCTTGCTGTTAATGGGTCGATATGATCGATTGATGGGGTCTCTATTCTGAGAACATGTTACTCAGACTCAGGAGTATTACGATGCTTTGAGCTGTGTGTCACAGTGGCA-CCCGAAACCTATGCTGAAATGCTCACGTTGGAGG--AAAACTAAATCCTAATGGCTTGCAAGAATAAATACTCATTTTA-------AATGA-------------------CCAGCGATTCCAAGGAAAAAAGTTAGATACCCACAAAATTGAATTCCTCCCCAGCAATGCCCCTTC-ACTTAAAGGTCTGAGTTCAACCAAATGCATCCCACTAGAATCCAGTCCTGAACATTGAAGTAAATG-AACAAATGCTCCTGGATGTATGAAGGCCCCAGCAGTAAAG-TGGGCACTTAAAAGA--CTCTCTCTTAGAGCCTGATTGATGCTTA i chlSab2.chr27 I 10 C 0 s calJac3.chr3 21280983 1040 - 190850796 TTAGTAACTTGTTATG---ATTTCCACTGGTTTAATCACTCTCT----------------------------------------------------------TTAATAAAAATGAAGTAAAAATG----ACTTAGTGTCCTTTTGTTTCTGCTGTGTTT-CTACAGGTCATATTCAGAGTTGACTGAGCACCATAAGTGTTCAGCCGACTCTGATTTTATTTTTATCGCATGCCTCATAAAACTGATTTAGAAACCTAAAAATGTGTCACTAAAATATTAAATTGTGAACAGTAAGAGCTTATTGAGTTTTCAAAATCTAACAAGAATGGTTGGCTATGAAGACAAACAAACATTCTTCAAATGTAGCCAGACACA----------------------------------------------------TTTTAAAA-------------------GCTCTTGGAGGGATCTCGAAGATTCGGAAGTG-CATGATTGATAC-CCTGCCAA-GATTTCAGAA-TCAGTAGTCTGTTTTTGGAAGACTCCTTC---TGCATGGATGCCTAGTAATATTCCCATCATAAAGCTGTTTGGCTCTATTTAAAAATTACAATGGAGGTCTAGTAAATTTGGAGAAAATTTCCATCCATTGGAATGTTTACAGTTAATTTCTACACAGGCATCTTTCTTACATTATCTCTGCTTCATAGAATCTTCATCACATTTCAACTGTCATCAGAATCCCGCTTTTCTCTTAGCTATATGCTTCATCATTTTCCTCTTACTGTTAATGGATCGATACGACTGATTGATGGAAGCCCTATTCTGAGAACATGTTACTCAGAAGCAGGGGTGTTATGATGCTTTGAGCTTCATGTCATGGTAGCAGCCCGAAACCTATGCTGCAATGCCCATGCTAGAGG--AAAACCAAATCCTAATGGCTTTCAATGATAAATATTCATTTTA-------AATGA-------------------CCAATGATTCCAAGGAATAAAATTAGATACCCACAAAACTGAATTCCTCCCCAGAAATGCCCTTTC-ATTTAAAGGTCTGAGTTCAAGCAAAGGCATGCCACTAGGACCAAGTTCTGAACATTGAAGTAAATG-AACAA--GCTCCTGGATGTATGAAGG--CCAGCAGTAAAGCTGAACACTTCATAAA--CTCTCTCTTAGAGCCAGATTGATGCTTA i calJac3.chr3 I 2 C 0 s mm10.chr5 49262473 978 + 151834684 TTAATAACTTATTTTACATTTTTCTAATGGCTTATGCATGTT-T-----------------------------------------------------TTCTCTTAATTAAAACTATACAGACATG--CAAAACAGCATCAT----ATTCTCCTCTGCTT-CTGTGGGTCATATTCAGAGATGACTGAACATTACTATTGTTCA---GACTTTGATTTTGTTTTTATTACATGTCTCTTAAAACTGATTTAGACACGTAAAGATGTGTCATTAAAATGTTGAATTATGAACACTTAGAACTTAC----ATCTTTAAGTCTGAAAAGCATGTCTGGTTATAA----GATCAAATAGTCTTCAAATGTAGTCACTCCTA----------------------------------------------------TTTAGGAA-------------------ACTCATGTAGATATATAAAATAATTAGAATTG-TACAATGAATATGTATGCCAA-TATTTAAGAT-TAAGTATACTCTTCTTAGAAGGGTCCTCCTTATTTATGGGCATGTGATGTAATTCACACCGCAAAGTTATTTGGCTCTGCTATAGAATTATAATGGATGCCGGACCACTTTAGAGGAAATGTCTACCCAGTGGCAAATTCACAGTCATTCTCTACATGGACTTCCTCATAGCATTATCTCTGCTTCACAGACTCTTCACCACACTCTGACTGCTATCAGAATCCAGCATTTCTCTTGGCTATATACTTCATTATTTTTCATTAGCTGTTAATGCATCTACA----TGGTTGATGGAGTCTCTTTT---AGAATATATTACATAGACACA-GATTTTTAAGATGTTTTGAAATGTACCCCAGGGT-----CTCCAAG--TGGGCTCCACTGCACACATTGGAAG--AAAACTAAATTGGAAACACTTGAAAAAATACATACTCA-TTTA-------AATGG-------------------TTAATGATT-CATGAGGAAATATGAAATACCCTCAAAGCTGAATTATACTCACAGAATATCCT-----CTTAAAGGCTTACTT----ATAAATACAGCTCCCTGAAACCCATT--------------------------------------GTTTG--GTTCTCATCAGGGACTCTGACCACTTCATGAG--CCCTCTTTCAAAATATGATTGATggcca i mm10.chr5 I 87 I 351 s canFam3.chr3 3855572 1068 - 91889043 -TAGTAGTTTCTTATG---TTTTCCACTGGTTTATTCATTCTTT-----------------------------------------------------TTCTTTTAACAAAAATGAAGTAAAAATGGGTAATTCAGTGTCATTTTGTTTTTACTCTGTTTCCTACAGGTCATATTCAGAACTGACTAAGCACCATAAGTGTTCAACAGATTTTGATCTTATTTTTATCACATGCCTCATAAAACTGATTTAGAAACCTAAAAATGTGTCACTAAAATATTGAATTATGAACAGTCAGAGCTTATTGAATTTCCCAAATCTAACGAGAATGGTTAGCTATGAAAGCAAACAAATATTCTTCAAATGTAGCCA----CA----------------------------------------------------TTTGAAGAATGTAGCCTACATTAAGGCATTCTTATGGGGATCTAGAAGATCCTGAACTGCCGTGATAGAGAC-CACACTGATGTTTTCAAAAGCCAATGGCCTGTCTTTGAAAGATTCTTCCTTCTGCATGGATGTCTGACATTATTCCCATCA-AAAGTGACTTGGATCTACTTTAGAATTATAAGGGATGTCAAATAAATGTAGAGAAAATTCCTA-CCACTGGTATAGG-AGAATTATTATCTACATGGACATCCTTTCTGCATTCTCTCTGCTTCACAGAATCTTCATCATATTCCAACTGTCAGCAGAATCCAGTTCTTCCCTTGAC--TCTACTGCATCATTTTCT-----CTATTAATGTTTCTATATGATTTGTGGAT-----CCCTTTC---------TGCTATTATGAC---------TTAGGATGCTTGGAGCTCCAAACCAGAGCACCAGCTTGAAAGCTATGCTCCAAGGCACACGTTGGGGGCAGAAACAAAATCCTACTGGCTTACAAGAGTGAGTATTCATTTTAAAGGTCTAATGAAAAAAAAAATAATAAAGGTCTAATGATTCCCAGGAAGAAAATTAGATGCCTATAAAATTGAATGATCCCCTAGCAATGCCCCTTTGACTCAAAGGTCATATTTCAAGCAAATACATTCCCCTGGAGCCTAGTCCTGAAACTTGAAGTAAAGGAAACAAATCCTCCTGAA--CAGGGAGCTTTATGCACTAAGC-TATGTACTTCCCAGA--CCCTCTCTGAGAGCTTGATTGATGCTTC i canFam3.chr3 C 0 C 0 a score=77627.000000 s hg38.chr4_KI270790v1_alt 157864 21 + 220246 CTTAACTTACCAAGAAGGGAT s panTro4.chr4 21545627 21 + 193495092 CTTAACTTACCAAGAAGGGAT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21722089 21 + 198332218 CTTAACTTACCAAGAAGGGAT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20332605 21 - 85365473 CTTAACTTACCAAGGAGGGAT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16799110 21 + 184069350 CTTAACTTACCAAGGAGGGAT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20848966 21 + 189454096 CTTAACTTACCAAGGAGGGAT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16439165 21 + 178775436 CTTAACTTACCAAGGAGGGAT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19922418 21 - 48547382 CTTAACTTACCAAGGAGGGAT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21282023 21 - 190850796 CTTAACTTACaaaggagggat i calJac3.chr3 C 0 C 0 s canFam3.chr3 3856640 21 - 91889043 CTTAATACACAAAGCAGGGAT i canFam3.chr3 C 0 I 16 e mm10.chr5 49263451 351 + 151834684 I a score=105122.000000 s hg38.chr4_KI270790v1_alt 157885 35 + 220246 TTTATGCTAAGATAGATCATATTTAAGATACTGGT s panTro4.chr4 21545648 35 + 193495092 TTTATGCTAAGATAGATCAGATTTAAGATACTGGT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21722110 35 + 198332218 TTTATGCTAAGATAGATCAGATTTAAGATACTGGT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20332626 35 - 85365473 TTTATGCTAAGATAGATTGTATTTAAGATATTGGT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16799131 35 + 184069350 TTTATGCTAAGATAGATCAGACTTAAGATACTGGT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20848987 35 + 189454096 TTTATGCTAAGATAGATCAGACTTAAGATACTGGT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16439186 35 + 178775436 TTTATGCTAAGATAGATCAGACTTAAGATACTGGT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19922439 35 - 48547382 TTTATGCTAAGATAGATCAGACTTAAGATACTGGT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21282044 35 - 190850796 tttatgctaaggtagatcggatttaagacactggg i calJac3.chr3 C 0 C 0 e mm10.chr5 49263451 351 + 151834684 I e canFam3.chr3 3856661 16 - 91889043 I a score=327711.000000 s hg38.chr4_KI270790v1_alt 157920 144 + 220246 TCTGacgtggacacaaggaggggaacatcacacaccggggcctgtcgggaggtggagagctaggcgaggaatagcattaaaagaaacaactaat-------gtagatgatgggttgatgggtgcagcaaaccaccatagcacgtgtatact s panTro4.chr4 21545683 144 + 193495092 TCTGacatggacacaaggaggggaacatcacacaccggggcctgtcgggaagtggagagctaggtgaggaatagcattaaaagaaacaactaat-------gtagatgatgggttgatgggtgcagcaaaccaccatagcacgtgtatact i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21722145 144 + 198332218 TCTGacatggacacaaggaggggaacatcacacactggggcctgtcaggaggtggagggctagacgaggaatagcattaaaagaaacacctaat-------gtagatgatgggttgatgggtgcagcaaactaccatagcacgtgtatact i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20332661 150 - 85365473 TCTGacatggacataaggaggagaacatcgcacaccggggcctgacgggaggtggagggctaggggaagaacagcattaaaagaaacacctaatgtagatggtagatggtgggttgatgggtgcagcaaaccaccgtggca-atgtatact i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16799166 144 + 184069350 TCTAacatggacgcagggaggggaaaatcacacaccggggcctgtcaggaggtggaggactaggggaggaatagcattaaaagaaacacctaat-------gtagatgatgggttgatgggaggaccaaaccaccatggcacatgtatact i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20849022 144 + 189454096 TCTAacatggacgcagggaggggaaaatcacacaccggggcctgtcaggaggtggaggactaggggaggaatagcattaaaagaaacacctaat-------gtagatgatgggttgatgggaggaccaaaccaccatggcacgtgtatact i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16439221 144 + 178775436 TCTAACATGGATGCAGGGAGGGGaaaatcacacactggggcctgtcaggaggtggaggactaggggaggaatagcattaaaagaaacacctaat-------gtagatgatgggttgatgggaggaccaaaccaccatggcacgtgtatact i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19922474 144 - 48547382 TCTAacatggacgcagggaggggaaaatcacacaccggggcctgtcgggaggtggaggactaggggaggaatagcattaaaagaaacacctaat-------atagatgatgggttgatgggagcaccaaaccaccatggcacgtgtatact i chlSab2.chr27 C 0 C 0 e mm10.chr5 49263451 351 + 151834684 I e calJac3.chr3 21282079 0 - 190850796 C e canFam3.chr3 3856661 16 - 91889043 I a score=176799.000000 s hg38.chr4_KI270790v1_alt 158064 76 + 220246 tatgtaacaaacctgcacattctgcacat--------gcaccccagaacttaaaatataataatttaaaacaaaaCA-----AAACAAA s panTro4.chr4 21545827 76 + 193495092 tatgtaacaaacctgcacattctgcacat--------gtaccccagaacttaaaatataataatttaaaacaaaaCA-----AAACAAA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21722289 76 + 198332218 tatgtaacaaacctgcacattctgcacag--------gtaccccagaacttaaaatataataatttaaaacaaaaCA-----AAACAAA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20332811 76 - 85365473 tatgtaacaaacctgcacattctgcacat--------gtgccccagaacttaaaatataataatttaaaacaaaaCA-----AAACAAA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16799310 74 + 184069350 tatgtaacaaacctgcacattctgcagat--------gtaccccagaacttaaaatataataatTTAAAATGAAACA-----AA--AAA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20849166 74 + 189454096 tatgtaacaaacctgcacattctgcagat--------gtaccccagaacttaaaatataataatTTAAAATGAAACA-----AA--AAA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16439365 74 + 178775436 tatgtaacaaacctgcacattctgcagat--------gtaccccggaacttaaaatataataatttaaaatgaaaca-----aa--aaa i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19922618 74 - 48547382 tatgtaacaaaccggcacattctgcaaat--------ctaccccagaacttaaaataaaataatttaaaacaaaaCA-----AA--AAA i chlSab2.chr27 C 0 C 0 s mm10.chr5 49263802 86 + 151834684 caagtaacaggcaaatacactgtgcacataaatgctggcaacccaaatactagtatat-atgagtaaaaataaaTAATTTTTAA--AAA i mm10.chr5 I 351 C 0 e calJac3.chr3 21282079 0 - 190850796 C e canFam3.chr3 3856661 16 - 91889043 I a score=102342.000000 s hg38.chr4_KI270790v1_alt 158140 55 + 220246 AAGat----actggttctgtaacacatctgctgtgag-------------accatgggaaaattt----------cctgact s panTro4.chr4 21545903 55 + 193495092 AAGat----actggttctgtaacacatctgctgtgag-------------accatgggaaaattt----------cctgact i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21722365 55 + 198332218 AAGat----actggttctgtaacacatctgctgtgag-------------accatgggaaaattt----------cctgact i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20332887 50 - 85365473 AAGAT----ACTGGTTCTGTAACCTATCTGCTGTGAG-------------ACCATGGGAAAATTT----------CC----- i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16799384 48 + 184069350 ATGat----actcgttctataacacatctgctgtgag-------------accatggggaaattt----------------- i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20849240 48 + 189454096 ATGat----actcgttctataacacatctgctgtgag-------------accatggggaaattt----------------- i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16439439 48 + 178775436 atgat----actCGTTCTATAACACATCTGCTGTGAG-------------ACCATGGGGAAATTT----------------- i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19922692 48 - 48547382 ATGat----actggttctgtaacacatctgctgtgag-------------accatggggaaattt----------------- i chlSab2.chr27 C 0 C 0 s mm10.chr5 49263888 76 + 151834684 GAGATTTTGACTGGTGCTGT------TTTACTATACAAAGCAAAGAAAGCACCATGAAATAATCTTGAATAAGATCCTAACC i mm10.chr5 C 0 C 0 s canFam3.chr3 3856677 36 - 91889043 AAGAT----ACAAGCTCGGTAACACATATGCCCTGTG-------------ATC----------------------------- i canFam3.chr3 I 16 C 0 e calJac3.chr3 21282079 0 - 190850796 C a score=2045863.000000 s hg38.chr4_KI270790v1_alt 158195 641 + 220246 tctgtcacacatc-tgctgtgagaccatgggaaaatttcctgacttctgtcaattttgttttccttttctgtgaTGGGAT-AA--ACACACCTATTCCTAGAATTGTTACAG-GCTGGATCTGATATAATAACCTTCTGATAGTAATTTACTGATCACTTGA-AACAAAGGTTCAGTGTATATTA-AATATGTGTTTTTACATAT--------TTTTCATTGGCCAAGCAT--ATTTACTGGTAAGCATGTTTG-------TTTT---------CTTCTGTCTAGTTCAGATACCAT--GAAAGTATGATAAGATTCCTT----------CAGGAAGGCTCAGGT-GACGATTGGGATAACCACA-tgttccaggtgtcctt---tgtgtaacaaattaccctcaaagttggcatattaaaacagcaaacattgatctcacag-ttcttgtgggtcaggactttgcgagtggcttagctgggtgcttctggccca-gcattgctcatgagtttgtagtcaag--------gtataggctagagccacagtcatctgaaggtctgtcaggcctgggagatctgctgccatcatggctcatgcacaagactgttggcgggaggcctcactttcctgccatgcaggtttctccag--agggagacag--tgacatggctcctggc-ttatccagagttaatgatccaat s panTro4.chr4 21545958 643 + 193495092 tctgtcacacatc-tgctgcgagaccatgggaaaatttcctgacttctgtcaattttgttttccttttctgtgatgggat-aa--acacacctattcctagaattgttACAG-GCTGGATCTGATATAATAACCTTCTGATAGTAATTTACTGATCACTTGA-AACAAAGGTTCAGTGTATATTA-AATATGTGTTTTTACATAT--------TTTTCATTGGCCAAGCAT--ATTTACTGGTAAGCATGTTTG-------TTTT---------CTTCTGTCTACTTCAGATACCATCAGAAAGTATGATAAGATTCCTT----------CAGGAAGGCTCAGGT-GACGATTGGGATAACCACA-tgttccaggtgtcctt---tgtgtaacaaattaccctcaaagttggcatattaaaacagaaaacattgatctcacag-ttcttgtgggtcaggactttgcgagtggcttagctgggtgcttctggccca-gcattgctcatgagtttgtagtcaag--------gtataggctagagccacagtcatctgaaggtctgtcaggcctgggagatctgttgccatcatggctcatgcacaagactgttggcgggaggcctcactttcctgccatgcgggtttctccag--agggagacag--tgacatggctcctggc-ttatccagagttaatgatccaat i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21722420 596 + 198332218 tctgtc----------------------------------------------attttgttttccttttctgtgatgggat-aa--acacacctattcctagaattgttACAG-GCTAGATCTGATATAATAACCTTCTGATAGTAATTTACTGATCACTTGA-AACAAAGGTTCAGTGTATATTA-AATATGTGTTTTTACATAT--------TTTTCATTGGTCAAGCAT--ATTTACTGGTAAGCATGTTTG-------TTTT---------CTTCTGTCTAGTTCAGATACCAT--GAAAGTATGATAAGATTCCTT----------CAGGAAGGCTCAGGT-GACGACGGGGATGACCACA-tgttccaggtgttctt---tgtgtaacaaattaccctcaaagttggcatattaaaacagcaaacattgatctcacag-ttcttgtgggtcaggaccttgtgagtggcttagcttggtgcttctggccca-gcattgctcatgagtttgcagtcaag--------gtacaggccagagtcacagtcatctgaaggtctgtcaggcctgggagatctgctgccatgatggctcatgcacaagactgttggcgggaggcctcactttcctgcagcgcgggtttctccag--agggagacag--tgacgtggctcttggc-ttacccagagtgaatgatccaat i ponAbe2.chr4 C 0 I 411 s nomLeu3.chr20 20332937 602 - 85365473 ----------------------------------------TGACTTCTGTCAATTTTGTTTTCCTTTTCTGTGATGGGAT-AA--ACACACCTATTCCTAGAATTGTTACAG-GCTGGATCTGATATAATAACCTTCTGATAGTAATTTACTGATCACTTGA-AACAAAGGTTCATTGTATATTA-AATATGTGTTTTTACATAT--------TTTTCATTGGTTAAGCAT--ATTTACTGGTAAGCATGTTTG-------TTTT---------CTTCTGTCTAGTTCAGATACCAT--GAAAGTATGATAAGATTCCTT----------CAGGAAGGCTCAGGT-GACGATTGGGATGACCCCA-tgttccaggtgtcctt---tatgtaacaaattaccctcaaagttagcatattaaaacagcaaacattgatcccacag-ttcttgtgggtcaggaccttgcgagtggcttagcttggtgcttctggccca-gcattgctcatgagtttgcagtcaag--------gtataggccagagccacagtcatctgaaggtctgtcaggcctgggagatctgctgccatgatggctcatgcacaagactgttggcgggaggcctcactttcctgcagggcaggtttctccag--aggaagacag--tgacatggctcttggc-ttacccagagtgaatcatccaat i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16799432 604 + 184069350 --------------------------------------cctgacttctgtcaattttgttttccttttctgtgatgggtt-aa--aaacacctatttctagaattgttaggg-gctggaactgagataatAACCTTCTGATAGTAATTCACTGATCACTTGA-AACAAAGGTTCTGTGTATATTA-AATATGTGCTTTTACATAT--------TTTTCATTGGCTAAGTAT--ATTTACTGGTAAGCATGTTTG-------TTTT---------CTTCTGTCTAGTTCACATACCAT--GAAAGCATGATAAGATTCCTT----------CAGGAAGGCTCAGGT-GACTATTGGGATAACCACA-tgttccaggtgtccat---tgtgtaacaaattacccgcaaagttggcatattaaaacagcaaacattgatctcacag-ttcttgtgggtcagtactttgtgagtggcttagctgggtgcttctggccca-gcattgctcatgagtttgcagtgaag--------gtataggtcagagccacagtcatctgaagctctgtcaggcctgggagatctgctgccatgatggctcatgcacaagactgttggcagaaggcctcactttcctgccgtgtgggtttctccag--agggagacca--tgacatggctcctggc-ttacccagagcgaatgatccaat i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20849288 604 + 189454096 --------------------------------------cctgacttctgtcaattttgttttccttttctgtgatgggtt-aa--aaacacctatttctagaattgttaggg-gctggaactgagataatAACCTTCTGATAGTAATTCACTGATCACTTGA-AACAAAGGTTCTGTGTATATTA-AATATGTGCTTTTACATAT--------TTTTCATTGGCTAAGTAT--ATTTACTGGTAAGCATGTTTG-------TTTT---------CTTCTGTCTAGTTCACATACCAT--GAAAGCATGATAAGATTCCTT----------CAGGAAGGCTCAGGT-GACTATTGGGATAACCACA-tgttccaggtgtccat---tgtgtaacaaattacccgcaaagttggcatattaaaacagcaaacattgatctcacag-ttcttgtgggtcagtactttgtgagtggcttagctgggtgcttctggccca-gcattgctcatgagtttgcagtcaag--------gtataggtcagagccacagtcatctgaagctctgtcaggcctgggagatctgctgccatgatggctcatgcacaagactgttggcagaaggcctcactttcctgccgtgtgggtttctccag--agggagacaa--tgacatggctcctggc-ttacccagagcgaatgatccaag i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16439487 604 + 178775436 --------------------------------------CCTGActtctgtcaattttgttttccttttctgtgatgGGTT-AA--AAACACCTATTCCTAGAATTGTTAGGG-GCTGGAACTGAGATAATAACCTTCTGATAGTAATTCACTGATCACTTGA-AACAAAGGTTCTGTGTATATTA-AATATgtgcttttacatat--------ttttcattgGCTAAGTAT--ATTTACTGGTAAgcatgtttg-------tttt---------cttctgtctAGTTCACATACCAT--GAAAGCATGATAAGATTCCTT----------CAGGAAGGCTCAGGT-GACTATTGGGATAACCACA-TGTTCCAGGTGTCcat---tgtgtaacaaattacccgcAAAGTTGGCATATTAAAACAGCAAACATTGATCTCACAG-TTCTTGTGGGTCAGGACTTTGTGAGTGGCTTAGCTGGGTGCTTCTGGCCCA-GCATTGCTCATGAGTTTGCAGTCAAG--------GTATAGGCCAGAGCCACAGTCATCTGAGGCTCTGTCAGGCCTGGGAGATCTGCTGCCATGATGGCTCATGCACAAgactgttggcaggaggcctcactTTCCTGCCGTGTGGGTTTCTCCAG--AGGGAGACAG--TGACATGGCTCCTGGC-TTACCCAGAGCGAATGatccaat i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19922740 604 - 48547382 --------------------------------------cctgacttctgtcaattttgttttccttttctgtgatgggtt-aa--aaacacctattcctagaattgttaggg-gctggaactgagataatAACCTTCTGATAGTAATTCACTGATCACTTGA-AACAAAGGTTCTGTGTATATTA-AATATGTGCTTTTACATAT--------TTTTCATTGGCTAAGTAT--ATATACTGGTAAGCATGTTTG-------TTTT---------CTTCTGTCTAGTTCACATACCAT--GAAAGCATGATAAGATTCCTT----------CAGGAAGGCTCAGGT-GACTATTGGGATAACCACA-tgttccaggtgtccat---tgtgtaacaaattacccgcaaagttggcatattaaaacagcaaacattgatctcacag-ttcttgtgggtcagtactttgtgagtggcttagctgggtgcttctggccca-gcattgctcatgagtttgcagtcaag--------gtataggccagagccacagtcatctgaagctctgtcaggcctgggagatctgctgccatgatggctcatgcacaagactgttggcaggaggcctcactttcctgccatgtgggtttctccag--agggagacag--tgacatggctcctggc-ttaccccgagcgaatgatccaat i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21282079 657 - 190850796 tctgtaacacatc-tgctgtaggaccacgggaaaatttcctgacttctgtcaattttgttttccttttctgtgatgggataaa--aaataccgattcctagaattgtt-gga-gctgaaactgagagaatAGCCTTCTGATAGTAGTTTATTTATCACTGGA-AACAAAAGTTCAGTTTATATTA-ATTACGTGTTTTTACATAT--------TTTTCATTGGTCAAGCAT--ATTTACTGGTAAGTATGTTTGTTTTCAATTTT---------CTTCTGTCTGGTTCAGACACCAT--GAAGGTAAGAGAAGATCCCTTATAAAGAATATGGGAAGGGTTAGGT-GACTGTTGGGATAACCACA-tgttccaggtgtccat---tgtgtaacacattaccctctaagttggtacactaaaacagcaaacattgatctcacag-ttcttacgggtcagaactttgggagtggcttagctgggtggttctggccca-gcattgctcatgagtttgcagtcaag--------gtgtaggctagagccacagtcatctga-ggtctgtcaggcctgtaagatctccggccatgatggctcatgcacaagactgttggcaggaggcctcacttccctgccatgtgggtttctccag--agggagacag--tgacatagctcctggc-ttacccagagtgaatgatccaat i calJac3.chr3 C 0 I 6 s mm10.chr5 49263964 649 + 151834684 ------TCATATTATACTTATTTATGATAGAGAAATAATCTAATTTTTGACAGTTTTTGTTTTCTCCTCTGTGATGTGGC-AA--GAACATTCATTTATAGAGATGTTGGGGAGCTTAAATTGATTTAACAAGCTTCTGATCATAGTTTAATTTTTATTC---ATTAAAAATTAGAAGCATGGTATGACCTTTATTTATTTATATGGTGTTTATTTTCATTAACTAACCAT--AAAAGATGGTGGGTATGTTTG-------TTTT--AAATTTGATTATATGAAGTTTAGACATCAA--GAAAGTACCATAGCATTCCTTATAAG-----GGAGATGGAGCACATAAAAAATTAAAATTACC-TA-TACCtttgttacctatttctgtgcaaataattacctgatatg-tagtggattgcaacaactagcgtttatctgacag-ttc--------cagaac--tataaaaagctcagttccgtcattcttatccaggggtcagtgaggatgtcacagtcacaaattgatcatgtgatgcagaactgcagtcatcaga---------aggcttgacaaagcagcttctcaggtagctcacgtgcagaactatatttggaaag-cttactttcaatctaagt-ggcttctccaggtagtgatctag--tgacaaaatcaccagcttttttcagagtcactgactcaat i mm10.chr5 C 0 C 0 s canFam3.chr3 3856713 627 - 91889043 ----------------------------------ATTCCTTAACCCCTGTCAATTTTGGTTTCCTCCTTTGAGAGGGGGA-AAAGAAATACCCATTCCCAGACCTGCTGGGG-ATTTTAGTCAAGGTAATAATCTTCTGGTCATAATTTACTTTTCACCTGGTGGGGGGAGGTCAGTGTGTATTA-AATATGTGTTTTG--------------TTTTTATCAGTCTAGTATACATTTATGGGTAGTTATGTTTG-------TTTTTTTAATTT-CCTCTGTCTAGCTCAAATATCAC--TGAAGTATC-CAAGGCTCTTCATAGGGGATAGAGGGAGGGGCAGGT-GACTTTTAGGATAAGAACACtgtcctagttatctattgctgtgtaaaaaattaccctctaatgcaatagattaaaacagtaactatttatctcacagtttctggtaggtcaggactttggaagtggtttagctgggtggttctggtgca-gggtctttcaggagatagcacttatg--------acataggagagagcagtgggtatctgaaggtttgacagggctggaggatctgcttccaagaaggtacatttacatggttattgataggagggctcactttgtcaccaagtgggtttctccat--aaactaaccagctggtgtggccactggc-ttgtccagag----tgatgcaac i canFam3.chr3 C 0 C 0 a score=656350.000000 s hg38.chr4_KI270790v1_alt 158836 190 + 220246 agaaaaagagagagagaaaaagcaaccagaataaatactgcagcacttttttaaccccaaccttagaaatggcatagcatcatgattgccat----------------------agcctggt-gtgatatgggaggagagtataggaaag------------------ggtgaataccaggaggtggggatACTTGTAAGCAACTAGCATTTATATAA-----CATCTCTCA-----------AGTT- s panTro4.chr4 21546601 190 + 193495092 agaaaaagagagagagaaaaagcaaccagaataaatactgcagcacttttttaaccctaaccttagaaatggcatagcatcatgattgccat----------------------agcctggt-gtgatatgggaggagagtataggaaag------------------tgtgaataccaggaggtggggatACTTGTAAGCAACTAGCATTTATATAA-----CATCTCTCA-----------AGTT- i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21723427 190 + 198332218 agaaaaagagagagaaaaaaagcaaccagaataaatgctgcagcacttttttaaccctaaccttagaaatggcatagcatcatgactgctat----------------------agcctggt-gtgatgtgggaggagagtataggaaag------------------tgtgaataccaggaggtggggatcCTCGTAAGCAACTAGCATTTATATAA-----CATCTCTCA-----------AGTT- i ponAbe2.chr4 I 411 C 0 s nomLeu3.chr20 20333539 190 - 85365473 agaaaaagagagagaaaaaaagcaaccagaataaatgctgcagcacttttttaaccctaacctaagaagtgacatagcatcatgattgccat----------------------agcctggt-gtgatgtggaaggagagtacaggaaag------------------tgtgaataccaggaggtggggatccttgtaagcaactaGCATTTATATAA-----CATCTCTCA-----------AGTT- i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16800036 190 + 184069350 agaaaaagagagagaaaaaaggcaaccagaataaatgctgcagcactttttcaaccctaaccttagaagtgacatagcatcatgattgccat----------------------agcctggt-gtaatgtgggaggagaatataggaaag------------------tgtgactaccaggaggtggggatccttgtaagcaactaGCATTTATATAA-----CATCTCTCA-----------AGTT- i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20849892 190 + 189454096 agaaaaagagagagaaaaaaggcaaccagaataaatgctgcagcactttttcaaccctaaccttagaagtgacatagcatcatgattgccat----------------------agcctggt-gtaatgtgggaggagaatataggaaag------------------tgtgactaccaggaggtggggatccttgtaagcaactaGCATTTATATAA-----CATCTCTCA-----------AGTT- i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16440091 190 + 178775436 agaaaaagagagagaaaaaaggcaacCAGAATAAATGCTGCAGCACTTTTTCAACCCTAACCTTAGAAGTGACATAGCATCATGATTGCCAT----------------------AGCCTGGT-ATAATGTGGGAGGAGAATATAGGAAAG------------------TGTGACTACCAGGAGGTGGGGATCCTTGTAGGCAACTAGCATTTATATAA-----CATCTCTCA-----------AGTT- i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19923344 190 - 48547382 agaaaaagagagagagaaaaggcaaccagaataaatgctgcagcactttttcaaccctaaccttagaagtgacatagcatcatgattgccat----------------------agcctggt-ataatgtgggaggagagtataggaaag------------------tgtgactatcaggaggtggggatccttgTAAGCAACTAGCATTTATATAA-----CATCTCTCA-----------AGTT- i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21282742 195 - 190850796 agagagagagagagagaaaaagtgaccagaataaatgctgcaacacttttttaaccctaaccttagaagtgacatagcatcatgattgccat----------------------agcctggt-gtgatgtgggaggagattacagaaaag------------------tgtgaataacagcaggtggggatccttgtaagcaactaGCATTTATATAATCTAGCATCTCTCA-----------AGTT- i calJac3.chr3 I 6 C 0 s mm10.chr5 49264613 196 + 151834684 ------------agggaaaaggagattaggatgaatgctgcaatgtctgtcacaacacaactttaggagagacactgcatcaggtcggccac----------------------agtctggtagtcatacagaggcaatgcaagggagagcagtgtactgaatataaccatgaataccacgagccaagTGATATCACA-GCAACAAGCATTTACACAG-----CATCTCTCA-----------GTTT- i mm10.chr5 C 0 I 1076 s canFam3.chr3 3857340 211 - 91889043 ------------agagagagagtgactacgttgaaaaccacagtacctttagaa-cctaatcttggatgtgacatgccatcgtgtctgccatattctaatagtcacataaatcaatcctggc-acaatgtggacagagatgaccacagtc------------------tgtgaatgccaggaggtgggaaacatcagaagccaGTAGCATTTACCTAG-----TAGGTAATAATAATAATAGTAATTT i canFam3.chr3 C 0 C 0 a score=952561.000000 s hg38.chr4_KI270790v1_alt 159026 287 + 220246 ATAAAGTGCTTTTCACAAATAAAACAACTCTAATGAAGCAAGAAACCAGACAGTCGAAATTACCCGCCTACGGCCACAGTTATCAACAGTATATACTCAAAATGACTCAAAAG----TGTTATTTTCCATTACATTCTTTATATCTTCTTGGTTCTCTTAGTTGATCAGGATATACTGTCTTCTATTTTGACACTAAGTAGCTTCATCTTGATTAAGTTCTAATAGTTAAGGTATTAATTTTCATTTA-----------AAATAAAATACAGTGCTTAATTATGATGGCAGAAAGTTAATTT---- s panTro4.chr4 21546791 287 + 193495092 ATAAAGTGCTTTTCACAAATAAAACAACTCTAATGAAGCAAGAAACCAGACAGTCGAAATTACCTGCCTACGGCCACAGTTATCAACAGTATATACTCAAAATGACTCAAAAG----TGTTATTTTCCATTACATTCTTTATATCTTCTTGGTTCTCTTAGTTGATCAGGATATACTGTCTTCTATTTTGACACTAAGTAGCTTCATCTTGATTAAGTTCTAATAGTTAAGGTATTAATTTTCATTTA-----------AAATAAAATACAGTGCTTAATTATGATGGCAGAAAGttaattt---- i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21723617 287 + 198332218 ATAAAGTGCTTTTCACAAATAAAACAACTCTAATGAAGCAAGAAGCCAGACAGTTGAAATTACCTGCCTACGGCCACAGTTATCAACAGCATATACTCAAAATGACTCAAAAG----TGTTATTTTCCATTACATTCTTTATATCTTCTTGGTTCTCTTAGTTGATCAGGATATACTGATTTCTATTTTGACACTAAGTAGCTTCATCTTGATTAAGTTCTAATAGCTAAAGTATTGATTTTCATTTA-----------AAATAAAATACAGTGCTTAATTATGATAGCAGACAGttaattt---- i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20333729 287 - 85365473 ATAAAGTGCTTTTCACAAATAAAACAACTCTAATGAAGCAAGAAACCAGACAGTTGAAATTACCTGCCTACGGCCACAGTTATCAACAGCGTATACTCAAAATGACTCAAAAG----TGTTATTTTCCATTATATTCTTTATATCTTCTTGGTTCTCTTAGTTAATCAGGATATACTGACTTCTACTTTGACACTAAGTAGCTTCATCTTGATTAAGTTCTAATAGCTAAAGTATTGATTTTCATTTA-----------AAATAAAATACAGTTCTTAATTATGATAGCAGAAAGTTAATTT---- i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16800226 283 + 184069350 ATAAAGTGCTTTTCACAAATCAAACAACCCTAATGAAGCAAGAAACCAGGCAGTTGAAATTACCTGCCTACGGCCACAGTTATCCACAGCATATACTCAAAATGACTCAAAAG----TGTTATTTTCCATTATATTCTTTATATCTTCTTGGTTCTCTTAGTTGATCAGGATATACTGACTTCTATTTTGACACTAAATAGCTTCATCTTGATTAAGTTCTAA----TAAAGTGTTGATTTTCATTTA-----------AAATAAAATACAGTGCTTAAGTACGATGGCAGAAAGTTAATTT---- i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20850082 283 + 189454096 ATAAAGTGCTTTTCACAAATCAAACAACTCTAATGAAGCAAGAAACCAGGCAGTTGAAATTACCTGCCTACGGCCACAGTTATCCACAGCATATACTCAAAATGACTCAAAAG----TGTTATTTTCCATTATATTCTTTATATCTTCTTGGTTCTCTTAGTTGATCAGGATATACTGACTTCTATTTTGACACTAAATAGCTTCATCTTGATTAAGTTCTAA----TAAAGTGTTGATTTTCATTTA-----------AAATAAAATACAGTGCTTAAGTACGATGGCAGAAAGTTAATTT---- i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16440281 283 + 178775436 ATAAAGTGCTTTTCACAAATCAAACAACTCTAATGAAGCAAGAAACCAGGCAGTTGAAATTACCTGCCTACGGCCACAGTTATCCACAGCATATACTCAAAATGACTCAAAAG----TGTTATTTTCCATTATATTCTTTATATCTTCTTGGTTCTCTTAGTTGATCAGGATATACTGACTTCTATTTTGACACTAAATAGCTTCATCTTGATTAAGTTCTAA----TAAAGtgttgattttcattta-----------aaataaaatacagtgctTAAGTACGATGGCAGAAagttaattt---- i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19923534 283 - 48547382 ATAAAGTGCTTTTCACAAATCAAACAACTCTAATGAAGCAAGAAACCAGACAGTTGAAATTACCTGCCTACGGCCACAGTTATCCACAGCATATACTCAAAATGACTCAAAAG----TGTTATTTTCCATTATATTCTTTATATCTTCTTGGTTCTCTTAGTTGATCAGGATATACTGACTTCTATTTTGACACTAAATAGCTTCATCTTGATTAAGTTCTAA----TAAAGTATTGATTTTCATTTA-----------AAATAAAATACAGTGCTTAAGTACGATGGCAGAAAGTTCATTA---- i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21282937 280 - 190850796 ATAAAGTGCTTTTCACAAATAAAACAACTC---TGAAGCAAGAAACTAAACAGTTGAAATTACCAGCCTAAAACCACAGTTATCAACAGTATCTACTCAAAATGACTCAAAAG----TGCTATTTTCTATTATATTCTTGATATTTTCTTGGTTCTCTTAGTTGATCAAGATATACTGACTTCTATTTTGACACTACATAGCTTCATC----TTAAGTTCTAATAGTTAAATTACTGATTTTCATTTAAAA-------TAAATAAAATACAGTGCTTAATTATGATGGCAGAAAG----TTT---- i calJac3.chr3 C 0 C 0 s canFam3.chr3 3857551 303 - 91889043 ATAAGACACTTGTCACAAAT-AAACAGCTCCA-TGAAGTAAGAAAtcagagagtttaaattacttgcccatggccacaattactaaaaggcTGTACTAAAAGTGACTCACAAGTAGATGTTATTTCACGTTATTTTCTCTAAGCCCTCTTGGTTC-CCTAATTGAATGGAATATACCAATTTCTCTTCTGATATTAACTAGCCTTACCTTGGATAAATTATAATAATCATAGAACTGATTTTCAATAACAAAAAAATTTAAGTAAAATGCAATGATCAATTATGAAGGAAGAAAGttaattaaaat i canFam3.chr3 C 0 C 0 e mm10.chr5 49264809 1076 + 151834684 I a score=1070678.000000 s hg38.chr4_KI270790v1_alt 159313 357 + 220246 AAATAAATTATAACAATAAGAAT--------------------------------------------------------------------AAAATATTTTATTT--------------------TAGAATGGCATATTTA-----------AAAAATAAACCC-T--------------------------------------------------------------------------CCACTAA----------------CATAATATTGGGCTTTATTCCAAATCCCACTT---TCTAGAAATTTAATTTACACT----------TTTCTGAAAATAAATATAAAAACCAGTGGAAATGAGGTGTTACCTGATTTTCTATCTGT-AAAGATGCAATTATAACTTTG---------AATCAACTATACTACCGTACTATACAGACTTGAACTAGCTAGTGGTGGTGGGTAATGAACTATGCTCCTGTGTTATTCCAAGTAAACAGCCA-----------------------------ACTTTAAGCAATTTTTTT------------AAAAAACAGCTGATTTCAGGATAAGTATTAAACAACAGTAC--- s panTro4.chr4 21547078 357 + 193495092 aaataaattataacaataagaat--------------------------------------------------------------------aaaatattttattt--------------------taGAATGGCATATTTA-----------AAAAATAAACCC-T--------------------------------------------------------------------------CCACTAA----------------CATAATATTGGGCTTTACTCCAAATCCCACTT---TCTAAAAATTTAATTTATACT----------TTTCTGAAAATAAATATAAAAACCAGTGGAAATTAGGTGTTACCTGATTTTCTATCTGT-AAAGATGCAATTATAACTTTG---------AATCAACTATACTAACGTATTATACAGACTTGAACTAGCTAGTGGTGGTGGGTAATGAACTATGCTCCTGTGTTATTCCAAGTAAACAGCCA-----------------------------ACTTTAAGCAAATTTTTT------------AAAAAACAGCTGATTTCAGGATAAGTATTAAACAACAGTAC--- i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21723904 356 + 198332218 aaataaattataacaataagaat--------------------------------------------------------------------aaaata-CTTGTTT--------------------TAGAATGGCATATTTA-----------AAAAATAAACCC-T--------------------------------------------------------------------------CTACTAA----------------CATAATATTGGGCCTTATTCCAAATCCCACTT---TCTAAAAATTTAATTTATACT----------TTTATGAAAATGAATATAAAAACCAGCGGAAATGAGGTGTTACCTGATTTTCTATCTGT-AAAGATGCAATCATAACTTTG---------AATCAACTATACTAACGTACTATACAGACTTGAACTAGCTAGTGGTGGTGCGTAACGAACTATGCTCCTGTGTTATTCCAAGTAAACAGCCA-----------------------------ACTTTAAGCAATTTTTTT------------AAAACACAGCTGATTTCAGGATAAGTATTAAACAACAATAA--- i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20334016 358 - 85365473 AAATAAATTGTAACAATGAGAAT--------------------------------------------------------------------AAAATACTTTATTT--------------------TAGAACAGCATATTTA-----------AAAAATAAACCC-T--------------------------------------------------------------------------CTATTAA----------------CATAATATTGGGCCTTATTCCAAATCCCACTT---TCTAAAAATTTAATTTATACT----------TTTATGAAAATAAATATAAAAACCAGTGGAAATGAGGTGTTACTTGATTTTCTATCTGT-AAAGATGCAATTATAACTTTG---------AATCAACTATACTGACGTACTATACAGACTTGAACTAGCTAGTGGTGGTGGGTAATGAACTATGCTCCTATGTTATTCCAAGTAAACAGCCA-----------------------------ACTTTGAGCGATTTTTTT-----------AAAAAAACAGCTGATTTCAGGATAAGTATTAAACAACAACAC--- i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16800509 355 + 184069350 AAACAAATTATAACAATAAGAAT--------------------------------------------------------------------AAAACATTTTATTT--------------------TAGAATGGCATATTTA-----------AAAAATAAACCC-T--------------------------------------------------------------------------CTACTAA----------------CATAATATTGGGCCTTATTCCAAATCTCACTT---TCtaaaaatttaatttatact----------tttataaaaataaatataaaaaCCAGTGGAAATGCGGTGTTATCTGATTTTCAATCTGT-AAAAATGCAATTCTAACTTTG---------AATCAACTACACTAACGTACTATACATACTTGAACTAGCTAGTGGTGGTGGGTAATGAACTATGCTCCTGTGTTATTCCAAGTAAAAAGCCA-----------------------------ACTTTAAGCAATTTTT--------------TAAACATTGCTGATTTCAGGATAAATACTAAACACCAATAA--- i rheMac3.chr5 C 0 I 3 s macFas5.chr5 20850365 355 + 189454096 AAACAAATTATAACAATAAGAAT--------------------------------------------------------------------AAAACATTTTATTT--------------------TAGAATGGCATATTTA-----------AAAAATAAACCC-T--------------------------------------------------------------------------CTACTAA----------------CATAATATTGGGCCTTATTCCAAATCTCACTT---TCTAAAAATTTAATTTATACT----------TTTATAAAAATAAATATAAAAACCAGTGGAAATGCGGTGTTATCTGATTTTCAATCTGT-AAAAATGCAATTCTAACTTTG---------AATCAACTACACTAACGTACTATACATACTTGAACTAGCTAGTGGTGGTGGGTAATGAACTATGCTCCTGTGTTATTCCAAGTAAACAGCCA-----------------------------ACTTTAAGCAATTTTT--------------TAAACATTGCTGATTTCAGGATAAATATTAAACACCAATAA--- i macFas5.chr5 C 0 I 3 s papAnu2.chr5 16440564 355 + 178775436 aaacaaattataacaataagaat--------------------------------------------------------------------aaaacattttattt--------------------tagaatggcatattta-----------aaaaataaaccc-t--------------------------------------------------------------------------cTACTAA----------------CATAATATTGGGCCTTATTCCAAATCtcactt---tctaaaaatttaatttatact----------tttataaaaataaatataaaaaccagtGGAAATGCAGTGTTATCTGATTTTCAATCTGT-AAAAATGCAATTCTAACTTTG---------AATCAACTACACTAACGTACTATACATACTTGAACTAGCTAGTGGTGGTGGGTAATGAACTGTGCTCCTGTGTTATTCCAAGTAAACAGCCA-----------------------------Actttaagcaattttt--------------taaacACTGCTGATTTCAGGATAAATATTAAACACCAATAA--- i papAnu2.chr5 C 0 I 3 s chlSab2.chr27 19923817 355 - 48547382 AAATAAATTATAACAATAAGAAT--------------------------------------------------------------------AAAACATTTTATTT--------------------TAGAATGGCATATTTA-----------AAAAATAAACCC-T--------------------------------------------------------------------------CTACTAA----------------CATAATATTGGGCCTTATTCCAAATCTCACTT---TTTAAAAATTTAATTTATACT----------TTTATAAAAATAAATACAAAAACCAGTGGAAATGAGGTGTTATCTGATTTTCAATCTGT-AAAAATGCAATTCTAACTTTG---------AATCAACTACACTAACGTACTATACATACTTGAACTAGCTAGTGGTGGTGGGTAATGAACTATGCTCCTGTGTTATTCCAAGTAAACAGCCA-----------------------------ACTTTAAGCAATTTTT--------------TAAAAACTGCTGATTTCAGGATAAATATTAAACACCAATAA--- i chlSab2.chr27 C 0 I 19 s calJac3.chr3 21283217 362 - 190850796 AAATAAATTATACCAAGAAGAAT---------------------------------------------------------------------AAACATTTTATTT--------------------TAGAATGGCATATTTA-----------AAAAATAAACCC-T--------------------------------------------------------------------------CTTCTAA----------------CATAATATTGGGTCTTATTCCAAATTCTACTT---TCTAAAAATTTAATTTCTACC----------tttttaaaaataaatataaaaaCTGG-GGAAATGAGGTGTTTTCTGATTCTCTATCTGT-AAAGATGCATTTCTaactataatcaactataatcaactataCTAACATTCTATACACACCTGAACTAGCTAGTAGTGGTGGGTAATGAACTCTGCTCCTGTGTTATTCCAAGTAAACAGACA-----------------------------ACTTTAAGCCACTTTT--------------AAAAAACAGCTTAATTCAAGATAACTATTAAACACCAGTAA--- i calJac3.chr3 C 0 C 0 s mm10.chr5 49265885 368 + 151834684 AAATAAA-TATATCCAAAAGAAT-------------------------------------------------------------------------TTTTAAACT--------------------TAGAAGACC----TTA-----------AAAGGTACACCTAT--------------------------------------------------------------------------GTAATGT----------------CACATATTTAGGCCACATTCCAGTTTTTTTTTGTGTGTGAAAAACTAAGAT---CA----------TTTAAAAAGGTCAATATGGAAAATGAATTAAGAAGATTGTTTCAATGTCCATTGTCTGTAAAAGGAATCATTCTAACTTTG---------CAGCGACTATAATTGTGCTCTGTGTACAGGAAGATTAGCTCAAAATCATGGACAATAAACGACACTCCTGTA--AGTCCATGTAAGTAACCACAGCTAGGAAGATGTATGGTTTTCTTTTGGCTTTGGTCTGGTTTTCT----------------AACAGTGAGTTTCAGCGTAAGTACTAGACACTA------- i mm10.chr5 I 1076 C 0 s canFam3.chr3 3857854 554 - 91889043 aaatagataataagaatgaaaattttattaaaaatGGAAGATCAAAAAAGGAAGAAATGTCCATTTAATATAATATTATTGGCCCtttttttaaagattttatttatttattcattagagacacagagagtggcagagacacaggcagaaggagaagcagaccc-ccatgcagggagcctgatgcagggactcaatcctggatcataggatcatgccctgagctgaaggcagatgcccaaccactgagacacccaggcatcccAATATTATTGGATCTTATTCCAAATCCTATGT---TCTAAAAATTTAAGTTCTACTTCTGGCAAAATTTTTAAAAATAAAC-TTAAAACAAGAGGGACAGAAATGTTATTGAATTTATTATCTCT-AAAGCTATCATTCTACTCTTG---------AGCCAGTGATTCTAGTACAGTGTACCTA-GTGAATGAGCTCATGAT-------AATGAACTA--------TGTTGTTCTAAGTAAACAGCCA-----------------------------ACTTTAGGAGTTTTTTCTTTTTCTTTTTTTCCTAAACAGCTGATTTCAGTGTAAGTGTTAAACACTATCAAATC i canFam3.chr3 C 0 C 0 a score=25289.000000 s hg38.chr4_KI270790v1_alt 159670 17 + 220246 ----CTTACTTCATCACTTCC s panTro4.chr4 21547435 17 + 193495092 ----CTTACTTCATCACTTCT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21724260 17 + 198332218 ----CTTACTTCATCATTTCT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20334374 17 - 85365473 ----CTTACTTCATCATTTCT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16800867 16 + 184069350 ----CTTATTTCCTCATTTT- i rheMac3.chr5 I 3 C 0 s macFas5.chr5 20850723 16 + 189454096 ----CTTATTTCCTCATTTT- i macFas5.chr5 I 3 C 0 s papAnu2.chr5 16440922 16 + 178775436 ----cttatttcctcatttt- i papAnu2.chr5 I 3 C 0 s calJac3.chr3 21283579 16 - 190850796 -----TTACTTCATCATTTCT i calJac3.chr3 C 0 C 0 s mm10.chr5 49266253 17 + 151834684 ----TATGGCCCACCATTCGT i mm10.chr5 C 0 C 0 s canFam3.chr3 3858408 21 - 91889043 ATTACATGGTCTATCATTTCT i canFam3.chr3 C 0 C 0 e chlSab2.chr27 19924172 19 - 48547382 I a score=561721.000000 s hg38.chr4_KI270790v1_alt 159687 162 + 220246 ATATGACTGACTTGTAGTCAGCGTTACTGAAGAACTA-------------AAGCTTAATTGTCAGTTAATTGA-----CACATTATTGTACATGT--TTCTATATGTGATTT-AAAAAATCCTAACTCAT-TTTAGATGCAAAGAA-ACCAGCACATAGTCTCATGCCTTGCAGGGAGTGTTTGA s panTro4.chr4 21547452 162 + 193495092 ATATGACTGACTTGTAGTCAGCGTTACTGAAGAACTA-------------AAGCTTAATTGTCAGTTAATTGA-----CACATTATTGTACACGT--TTCTATATGTGATTT-AAAAAATCCTAACTCGT-TTTAGATGCAAAGAA-ACCAGCACATAGTCTCATGCCTTGCAGGGCGTGTTTGA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21724277 162 + 198332218 ATATGACTGACTTGTAGTCAGTGTTACTGAAGAACTA-------------AAGCTTAATTGTCAGTTAATTGA-----CACATTATTGTACACGT--TTCTATATGTGATTT-AAAAAATCCTAACTCAT-TTTAGATGCAAAGAA-ACCAGAACATAGTCTTATGCCTTGCAGGGAGTGTTTGA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20334391 157 - 85365473 ATATGACTGACTTGTAGTCAGTGTTACTGAAGAACTA-------------------AATTGTCAGTTAATTGA-----CACATTATTGTACATGT--TTCTATATATGATTTAAAAAAATCCTAACTCAT-TTTAGATGCAAAGAA-ACCGGCACATAGTCTCATGCCTTGCAGGGAGTGTTTGA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16800883 162 + 184069350 ACATGACTGACTTGTAGTCAGTGTTACTGAAGAACTG-------------AAGTTTAATTGTCAGTTAATTGA-----CACATTATTATACACGT--TTCTACATGTGATTT-AAAAAATCCTAACTCAT-TTTAGATGCAAAGAA-ACCAGCACATAGTCTCATGCCTTGCAGGGAGTGTTTGA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20850739 162 + 189454096 ACATGACTGACTTGTAGTCAGTGTTACTGAAGAACTG-------------AAGTTTAATTGTCAGTTAATTGA-----CACATTATTATACACGT--TTCTACATGTGATTT-AAAAAATCCTAACTCAT-TTTAGATGCAAAGAA-ACCAGCACATAGTCTCATGCCTTGCAGGGAGTGTTTGA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16440938 162 + 178775436 acatGACTGACTTGTAGTCAGTGTTACTGAAGAACTG-------------AAGTTTAATTGTCAGTTAATTGA-----CACATTATTATACACGT--TTCtacatgtgattt-aaaaaatcctaACTCAT-TTTAGATGCAAAGAA-ACCAGCACATAGCCTCATGCCTTGCAGGGAgtgtttga i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19924191 154 - 48547382 ATATGACTGACTTGTAGTCAGTGTTACTGAAGAACCG-------------AAGTTT--------GTCAGTTGA-----CACATTATTATACACGT--TTCTACATGTGATTT-AAAAAATCCTAACTCAT-TTTAGATGCAAAGAA-ACCAGCACATAGTCTCATGCCTTGCAGGGAGTGTTTGA i chlSab2.chr27 I 19 C 0 s calJac3.chr3 21283595 161 - 190850796 ATATGACTGACTTGTAGTCAGTGTTACTGAAGAACTG-------------AAGTTTAAATGTCAGTTAACTGA-----CACAATATTGTACACGT--TTCTATATGTGACTT--AAAAATCCTAACTCAC-TTTAGATGCAAAGAA-ACCAGTAAACAGTCTCATGCCTGGCAGGGAGCGTTTGA i calJac3.chr3 C 0 C 0 s mm10.chr5 49266270 164 + 151834684 GTTTAACTGAGTTGTAATTGGGGTTAGTGAAGCACAA-------------AAGTCTACTTGTGAGTGAACTGGAAAACCCCATGACTATGTTTCTG-CTCTACATATAGCTT---CAAACTCCAGCTCAT-TT--AACTTAAAGAA-AACAGCCTATGTTCTCGGTCTTCACTGTGCACACGAGA i mm10.chr5 C 0 C 0 s canFam3.chr3 3858429 179 - 91889043 ATTTGACTGAATTGTAGTCAATGGTTCTGAAAGTTTGTCAATGGCAGTGAAAGTTTACATGGAAGTTAATTGG-----CAAATCATTGTGCACGTGCTTTTATATATGCTTT-TAAACATCCCAACTCATCTTTACACTTAAAAAACAACAGAACATATCCTTACACCTTGAAGGGAGTATTTAA i canFam3.chr3 C 0 I 230 a score=1073161.000000 s hg38.chr4_KI270790v1_alt 159849 307 + 220246 AAACAAAAATG-AAGAT-AAACAATGTCTTATCAGAAAACTCAATCTTCTAAATGCGTTAGC-TTTAAAAATGTTAAAAA------CAGATTTAGAGAGGAGAATATTAATGACTTGTCAGCAGAGTTAAAG---TGATACTTATAGCTCTTTGCTATATGTATTGAATTTGTGTCTAGTCTAA--TTTTTTTCTTAGAGTAATAACCAGAAACTGAGCTCTCATGAACACTGAACATGGAAGATCACAGATCAGGCAAGATTGTG-GTGTGTGTATGTGTGCACACACACCCATGTACATTTCT--ACCTTATATACAGGATC s panTro4.chr4 21547614 307 + 193495092 AAACAAAAATG-AAGAT-AAACAATGTCTTATCAGAAGACTCAATCTTCTAAATGCGCTAGC-TTTAAAAATGTTAAAAA------CAGATTTAGAGAGGAGAATATTAATGACTTCTCAGCAGAGTTAAAG---TGATACTTATAGCTCTTTGCTATATGTATTGAATTTGTGTCTAGTCTAA--TTTTTTTCTTAGAGTAATAACCAGAAACTTAGCTGTCATGAACATTGAACATGGAAGATCACAGATCAGGCAAGATTGTG-GTGTGTGTATGTGTGCACACACACCCATGTACATTTCT--ACCTTATATACAGGATC i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21724439 312 + 198332218 AAACAAAAATG-AAGAT-AAACAATGTCTTATCACAAGACTCAATCTTCTAAACACATTAGC-TTTAAAAATGTTAAAAA------CAGATTTAGAGAGGAGAATATTAACGACTTGTCAGCAGAGTTAAAGTAATAATACTTATAGCTCTTTGCTATATGTATTGAGTTTGTGTCTAGTCTAAATTTTTTTTCATAGAGTAATAACCAGAAACTTAGCCCTGATGAACACTGAACATGAAAGACCACAGATCAGGCAAGATTGTG-ATGTGTGTATGTGTGCACACACACCCGTGTATATTTCT--GCCTTATATACAGGATC i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20334548 307 - 85365473 AAACAAAAATG-AAGAT-AAACAATGTCTTATCAGAAGACTCAATCTTCTAAACACTTTAGC-TTTAAAAATGTTAAAAA------CAGATTTAGAGAGGAGAATATTAATGACTTGTCAGCAGAGTTAAAG---TGATACTTATAGCTCTTTGCTATATGTATTGAGTTTGTGTCTAGTCTAA--ATTTTTTCATAGAGTAATAACCAGAAACTTAGCCCTGATGAACATTGAACATGGAAGATCACAGATCAGGCAAGATTGTG-ATGTGTGTATGTGTGCACATACACCCATGTATATTTCT--ACCTTATATACAGGATC i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16801045 308 + 184069350 AAACAAAAATGAAAAAT-AAACAATGTCTCATCAGAAGACTCAATCCTCTAAACACTTTAGC-TTTAAAAATGTTAAAAA------CAGATTTAGAGAGGAGAATATTAATGACTTGTCAGCAGAGTTAAAG---TGATACTTACAGCTCTTTGCTATATGTATTGAGTTTGTGTCCAGTCTAA--ATTTTTTCTTAGAGTAATAACCAGAAACTTAGCCCTCATGAACACTGAACATGGAAGATCACAGATCAGGCAAGATTGTG-GTGTGTGTATGTGTGCACACACACCCATGTACATTTCT--ACCTTATATACAGGATC i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20850901 308 + 189454096 AAACAAAAATGAAAAAT-AAACAATGTCTCATCAGAAGACTCAATCCTCTAAACACTTTAGC-TTTAAAAATGTTAAAAA------CAGATTTAGAGAGGAGAATATTAATGACTTGTCAGCAGAGTTAAAG---TGATACTTACAGCTCTTTGCTATATGTATTGAGTTTGTGTCCAGTCTAA--ATTTTTTCTTAGAGTAATAACCAGAAACTTAGCCCTCATGAACACTGAACATGGAAGATCACAGATCAGGCAAGATTGTG-GTGTGTGTATGTGTGCACACACACCCATGTACATTTCT--ACCTTATATACAGGATC i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16441100 308 + 178775436 aaacaaaaatgaaaaat-aaacaatgtcTTATCAGAAGACTCAATCCTCTAAACACTttagc-tttaaaaatgttaaaaa------cagatTTAGAGAGGAAAATATTAATGACTTGTCAGCAGAGTTAAAG---TGATACTTACAGCTCTTTGCTATATGTATCGAGTTTGTGTCCAGTCTAA--ATTTTTTCTTAGAGTAATAACCAGAAACTTAGCCCTCATGAACACTGAACATGGAAGATCACAGATCAGGCAAgattgtg-gtgtgtgtatgtgtgcacacacacccatgtaCATTTCT--ACCTCATATACAGGATC i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19924345 307 - 48547382 AAACAAAAATG-AAGAT-AAACAATGTCTTATCAGAAGACTCAATCTTCTAAACACTTTAGC-TTTAAAAATGTTAAAAA------CAGATTTAGAGAGGAGAATATGAATGACTTGTCAGCAGAGTTAAAG---TGATACTTACAGCTCTTTGCTATATGTATTGAGTTTGTGTCTAGTCTAA--ATTTTTTCTTAGAGTAATAACCAGAAACTTAGCCCTCATGAACATTGAACATGGAAGATCACAGATCAGGCAAGATTGTG-GTGTGTGTATGTGCGCACACACACCCATGTACATTTCT--ACCTTATATACAGGATC i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21283756 311 - 190850796 AAACAAAAATG-AAGAT-AAACAATGTCTTATCAGAAGACTCAATCTTCTAAACACTTTATC-ATTAAAAATGATAAAAAATAAATCAGGTTTAGAGAGGAGAATATGAATGACTTGTCAGCAGAGTTAAAG---TGATACTTATAGCTCTCTGCTATA-GTATTGAGCTTGCACCTGGACTAA--ATTTTTT-TTAGAGTAATAACCAGAAGCTTAGCCCTGATGAAGATCGAATGTGGAAGACCACAGCTCAGGCAAGATTGTG-GTGTGAGTGTGTGCATACACACACTCATGTATATTTTT--ATCTTATATACAGGATC i calJac3.chr3 C 0 C 0 s mm10.chr5 49266434 280 + 151834684 AAATAAAAATGAAGGAG-AAGCACTGTGCCGTCAG----CTCAAACATTTAAGCAATGAAAAGTCTAACAAT----AAAG------AAGATTCAG-GATGCAGATGTTAGTGACTTTCCAACAGAATTATGG---GAATATTTAGAGTTCTTTGAAGTATTCAGTGAGTTCACTGCTAGTCCAA--G---TATCTTAAAAGAATAGTCTAAAGTGTGTCCTTGATACACAA-------GTAAGGTCACAGCTTAG---AGATTTTT-GGGATTTTATGCACGGAC-------TATTTTTTTTTTTTAACCTTGTTCATAGAA-- i mm10.chr5 C 0 C 0 s canFam3.chr3 3858838 302 - 91889043 AAACAGAAATG-AAGATAAAACTGCATCTTATCAGCACACTCCATCTTCTAAAC---------ATTAAAAATTCTAACAA----ATCAGATTTAGAATGGAGAATACTAATGACTTGTCAGCAGAGTTAAAG---TAATACTTACAGCTTTTTGCTGTATTTATTGAATTAGATTCTTATCTGT--A-TTTTTCTTTGAGTCCTAACCAGGAACTTGGCTCTGACAGACAATGAAGTTTGCAGATCAAGCAGGAGTTAGGAATGTGCATGCATGTGTCTGTGTATGCACACCCATGTACTTTCCT--ATCTCTTCTACAGGATC i canFam3.chr3 I 230 I 171 a score=153224.000000 s hg38.chr4_KI270790v1_alt 160156 40 + 220246 ATTGGTGTGGGCTTTCTCTACGTCTAATCCAAATAAGCTT s panTro4.chr4 21547921 40 + 193495092 ATTGGTGTGGGCTTTCTCTATGTCTAATTCAAATAAGCTT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21724751 40 + 198332218 ATTGGTGTGGGCTCTCTCTACATCTAATTCAAATAAGCTT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20334855 40 - 85365473 ATTGGTGTGGACTTTCTCTACATCTAACTCAAATAAGCTT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16801353 40 + 184069350 CTTGGTGTGGGCTTTCTCTACATCTAATTCAAATAAGCTT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20851209 40 + 189454096 CTTGGTGTGGGTTTTCTCTACATCTAATTCAAATAAGCTT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16441408 40 + 178775436 CTTGGTGTGGGCTTTCTCTACATCTAATGCAAATAAGCTT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19924652 40 - 48547382 CTTGGTGTGGGCTTTCTCTACATCTAATTCAAATAAGCTT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21284067 40 - 190850796 ACTGGTGTGAGCTTTCTCTACATCTAATCCAAATGAGCTT i calJac3.chr3 C 0 C 0 s mm10.chr5 49266714 29 + 151834684 -----------CTTTTTCTATAACGAACTCAAATTGGTCT i mm10.chr5 C 0 I 71 s canFam3.chr3 3859311 40 - 91889043 GTGGGTGTGGGCTTTCTCTACATGTAATTCAAACAAGCTT i canFam3.chr3 I 171 C 0 a score=133077.000000 s hg38.chr4_KI270790v1_alt 160196 43 + 220246 TTTGCAGGGTTAAACTGATCTGAATACTTCTTTGTGAAAGTAA s panTro4.chr4 21547961 43 + 193495092 TTTGCAGGGTTAAACTGAACTGAATACTTCTTTGTGAAAGTAA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21724791 43 + 198332218 TTTGTAGGGTTAAACTGATCTCCATACTTCTTTATGAAAGTAA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20334895 43 - 85365473 TTTGTAGGGTTAAACTGATCTCTATACTTCTTTGTGAAAGTAA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16801393 43 + 184069350 TCTGCAGGGTTAAACTGATCTCTATACTTCTTGGTGAAAGTAA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20851249 43 + 189454096 TCTGCAGGGTTAAACTGATCTCTATACTTCTTGGTGAAAGTAA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16441448 43 + 178775436 TCTGCAGGGTTAAACTGATCTCTATACTTCTTGGTGAAAGTAA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19924692 43 - 48547382 TCTGCAGGGTTAAACTGATCTCTATACTTCTTGGTGAAAGTAA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21284107 43 - 190850796 TTTGCAGGGTAAAACTGATCTGTATACTTCTTTGTGAAAGTAA i calJac3.chr3 C 0 C 0 s canFam3.chr3 3859351 30 - 91889043 ---------TTGA----ATCTGTATGCTTTTGGGTAAAAGTAA i canFam3.chr3 C 0 C 0 e mm10.chr5 49266743 71 + 151834684 I a score=1782167.000000 s hg38.chr4_KI270790v1_alt 160239 508 + 220246 CTTTAAAGAGGTAATAGTGTATGGCGATTATTTGGGCAATTTAGCCCATAATGGCTAC---AAGTGGG--TTATGTTCCTTAATTGCTTTGAATATTACATCTTGAAGACAGCAGTGTTTTCACTTTTACAAGTTATCTTAGAAAGTCTGAGATGCAGTATACTTAGCTCTTCCCAACTGTAACCTCTCTCATTGTGCCTTTGAGAAATGAAGCTCAGATTGAGTGTCCTTACCCAACAAATCAAGAAGTAGAACTTGTTCCCTTGTTCTTATTTTGGGAATTTTAATCCTATATCATACCACTTTCATCTCCAGATACAACAGCCTTGGCAGTATCTAGAGGAGTGTTTCCATACCTCAATCATCTGTGGATCCCATTCAT-GGTTGAACAGTACCTGTATTTTACCTAGTATTCCTGTGTGAGTTTTGCCACACCTGAGTAACCTTTGGGTCAGT---ATTTTAAAAATA---------------------AATTAGTTTTAGTGAAATAAATTTATT-TTAAATCAAATATCTAAT s panTro4.chr4 21548004 508 + 193495092 CTTTAAAGAGGTAATAGTGTATGGCGATTATTTGGGCAATTTAGCCCATAATGGCTAT---GAGTGGG--TAATGTTCCTTAATTGCTTTGAATATTATATCTTGAAGACAGCAGTGTTTTCACTTTTACAAGTTATCTTAGAAAGTATGAGATGCAGTATACTTAGCTCTTCCCAACTGTAACCTCTCTCATTGTGCCTTTGAGAAATGAAGCTCAGATTGAGTGTCCTTACCCAACAAATCAAGAAGTAGAACTTGTTCCCTTGTTCTTATTTTGGGAATTTTAATCCTATATCATACCACTTTCATCTCCAGACACAACAGCCTTGGCAGTATCTAGAGGAGTATTTCCATACCTCAATCATCTGTGGATCCCATTCAT-GGTTGAACAGTACCTGTATTTTACCTAGTATTCCTGTGTGAGTTTTGCCACACCTGAGTAACCTTTGGGTCAGt---attttaaaaata---------------------aattagttttagtgaaataaatttatt-ttaaatcaaatatctaat i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21724834 505 + 198332218 CTTTAAAGAGTTAATAGTGTATGGTGATTATTTGGGTAATTTATCCCATAATGGCTAT---GAGCGGG--TAATGTTCCTTAATTGTTTTGAATATTACATCTTGAAGTCAGCAGTGTTTTCACTTTTGCAAGTTATCTAAGAAAGTCTGAGATGCAGTATACTTGGTTGTTCCCAACTGTAACCTCTCTCATTGTACCTTTGAGAAATGAAGCTCAGATTGAGTGTCCTTACCCAACAAATCAAGAAGTAGAACTTGTTCCCTTGTTCTTATTTTGGGAATTTTAATTGTATATCATAACACTTTCATCTCCAGATACAACAACTTTGGCAGTATCTAGAGGAGTGTTTCCATACCTCAATCATCTGTGGATCCCATTCAT-GGTTGAACAGTACCTATATTTTACCTAGTA----TGTGTGAGTTTTGCCACACCTGAGTAACCTTTGGATCAGT---ATTTTTAAAATA--------------------GAATTAGTTTTAGTGAAATAAATTTATT-TTAAATCAAGTATCTAAT i ponAbe2.chr4 C 0 M 444 s nomLeu3.chr20 20334938 508 - 85365473 CTTTAAAGAGGTAATAGTGTATGGTGATTATCTGGGTAATTTAGCCCATAATGGCTAT---GAGTGGG--TAATGTTCCTTAATTGTTTTGAATATTACATCTTGAAGTCGGCAGTGTTTTCACTTTTGCAAGTTATCTAAGAAAGTCTGAGATGCAGTATACTTAGTTGTTCCCAACTATAATCTCTCTCACTGTACCTTTGAGAAAGGAAGCTTAGATTGAGTGTCCTTACCCAATAAATCAAGAACTAGAACTTGTCCCCTTGTTCTTACTTTGGGAATTTTAATCCTATATCATACCACTTTCATCTCCAGATACAACAGCCTTGGCAGTACCTAGAGGAGTGTTTCCATACCTCAATCATCTGTGGATCCCATTCAT-GGTTGAACAGTACCTGTATTTTACCTAGTATTCCTGTGTGAGTTTTGCCACACCTGAGTAACCTTTGGATCAAT---ATTTTAAAAATA---------------------AATTAGTTTTAGTGAAATAAATTTATT-TTAAATCAAGTATTTAAT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16801436 508 + 184069350 ATTTAAAGAGGTAACAGTGTATGGTGATTATTTGGGCAATTTAGCCCATAATGGCTAT---GAGTGGG--TAATGTTCCTTAATTGCTTTGAATATTACATCTTGAAGACAGCAGTGTTTTCACTTTTGCAAGTTATCTAAGAAAGTCTGGGATGCAGTGTACTTAGTTGTTCTCAACTGCAATCTCTCTCATTGTACCTTTGAGAAAGGAAGCTTGGATTGAGTGTCCTTACCCAATAAATCAAGAACTAGAACTTCTCCCCTTGTTCTTATTTTGGGAATTTTAATTCTATATCATACCACTTTCATCTCCAGATACAACAGCCTTGGCAGTACCTAGAGGAGCGTTTCCATACCTCAATCATTTGTGGATCCCATTCAT-GGTTGTACAGTACCTGTATTCTACCTAGTATTCCTTTGTGAGTTTTGCCACACCTGAGTAACCTTTGGATCGat---attttaaaaata---------------------aattagttttagtgaaataaatttatt-ttaaataaagtatctaat i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20851292 508 + 189454096 ATTTAAAGAGGTAACAGTGTATGGTGATTATTTGGGCAATTTAGCCCATAATGGCTAT---GAGTGGG--TAATGTTCCTTAATTGCTTTGAATATTACATCTTGAAGACAGCAGTGTTTTCACTTTTGCAAGTTATCTAAGAAAGTCTGGGATGCAGTGTACTTAGTTGTTCTCAGCTGCAATCTCTCTCATTGTACCTTTGAGAAAGGAAGCTTGGATTGAGTGTCCTTACCCAATAAATCAAGAACTAGAACTTCTCCCCTTGTTCTTATTTTGGGAATTTTAATTCTATATCATACCACTTTCATCTCCAGATACAACAGCCTTGGCAGTACCTAGAGGAGCGTTTCCATACCTCAATCATTTGTGGATCCCATTCAT-GGTTGTACAGTACCTGTATTCTACCTAGTATTCCTTTGTGAGTTTTGCCACACCTGAGTAACCTTTGGATCGAT---ATTTTAAAAATA---------------------AATTAGTTTTAGTGAAATAAATTTATT-TTAAATAAAGTATCTAAT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16441491 498 + 178775436 ATTTAAAGAGGTAACAGTGTATGGTGATTATTTGAGCAATTTAGCCCATAATGGCTAT---GAGTGGG--TAATGTTCCTTAATTGCTTTGAATATTACAACTTGAAGACAGCAGTGTTTTCACTTTTGCAAGTTATCTAAGAAAGTC----------TGTACTTAGTTGTTCTCAACTGCAATCTCTCTCATTGTACCTTTGAGAAAGGAAGCTTGGATTGAGTGTCCTTACCCAATAAATCAAGAACTAGAACTTCTCCCCTTGTTCTTATTTTGGGAATTTTAATTCTATATCATACCACTTTCATCTCCAGATACAACAGCCTTGGCAGTACCTAGAGGAGCGTTTCCATACCTCAATCATTTGTGGATCCCATTCAT-GGTTGTACAGTACCTGTGTTCTACCTAGTATTCCTTTGTGAGTTTTGCCACACCTGAGTAACCTTTGGAtcggt---attttaaaaata---------------------aattagttttagtgaaataaatttatt-ttaaataaagtatctaat i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19924735 509 - 48547382 ATTTAAAGAGGTAACAGTGTATGGTGATTATTTGGGCGATTTAGCCCATAATGGCTAT---GAGTGGG--TAATGTTCCTTAATTGCTTTGAATATTATATCTTGAAGACAGCAGTGTTTTCACTTTTGCAAGTTATCTAAGAAAGTCTGGGATGCAGTGTACTTAGCTGTTCTCAACTGCAATCTCTCTCATTGTACCTTTGAGAAAGGAAGCTTGGATTGAGTGTCCTTACCCAATAAATCAAGAACTAGAACTTCTCCCCTTGTTCTTATTTTGGGAATTTTAATTCTATATCATACCCCTTTCATCTCCAGATACAAAAGCCTTGGCAGTACCTAGAGGAGCGTTTCCATACCTCAATCATTTGTGGATCCCATTCATGGGGTGTACAGTACCTGTATTCTACCTAGTATTCCTTTGTGAGTTTTGCCACACCTGAGTAACCTTTGGATCAAT---ATTTTAAAAATA---------------------AATTAGTTTTAGTGAAATAAATTTATT-TTAAATAAAGTATCTAAT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21284150 506 - 190850796 CTTTAAAGAGGTAATAGTGTATGGTGATTATTTGGGCAATTTAGTCCATAACAGCTAT---GAGTGGG--TAATGTTCCTTAATTGTTTTGAATACTACATCGTGAAGACAGCAGTGTTTTCACTTTTGCAAGTTATCTCAGCAAGTCTGAGATACAGTATATGTAGCTGTTCCCAACTGTAATCTCTCTCATTGTACCTTTGAGAAATAAAGCTTGGATTGAGTGTCCTTACCCAATAAATCAAGAAGTAGAACTTGTCTCCTTGTTCTTATTTTGGGAATTTTAATCC--TATCAAACCACTTTCATCTCCAGATACAATAGCCTTAGCAATACCTAGAGGAGTGTTTCTAAACCTCAGTAATCTGTGGATCCCATTCAT-GATTGTAGAGTACCTATATCCTACCTAGTATTCCTTTCTGAGTTTTGCCATACCTGAGTAACCTTTGGATTGAC---attttaaaaata---------------------aattagttttagtaaaataaatttatt-ttaaataaaGTATCTAAT i calJac3.chr3 C 0 C 0 s mm10.chr5 49266814 459 + 151834684 cTGTCACGAGGTCGTAGCATACAGTAACTTTGGGGTCAGTCTGACCAATAGTGGATAT---TAAGAGGAATGATGTTTCTTAATGGTTGTCAGCAGTACACCTTAGA----ACAGGGTTCTCATATTCCTAAGTTGCCTGAATGCTCCTG---TACAGAATATTAAGGCATTTTCTCCTGT----------TTTTTATCTGTATGAATCAGAGCTTGGGTTGAGTTTCTTT---CA------CAAGAA--AGAACTT------------TTACTCTAAGACTTTCACATTAATACATTCCTGCTTTCAT-TATACATGCAGCATCTT--GCAATGCCTGAAGACACATACTTAAACTTCATTCCTTATTG--TCCTGCTCTC-AGGTG--CAGTACT----GCCTACCCAATCTTCCCTTCTGAGATTTGACAGATGGGCGCAACCACTGAATTGATGCAATTTTAAAA------------------------TGTCAGTCTCAGTGACACTGACTTCTT-TTAAATAAAATACTCCGT i mm10.chr5 I 71 C 0 s canFam3.chr3 3859381 489 - 91889043 CTTTGAGGAGGTAATAGTGTATGGTGATTATTGGGGCAATTTGGCCCCTCATGGTTATGAAGAGTGGG--TAATGTTCCTTAATTGTTTTGAATATTACATCTTGGAAACTGCAGTGTTATCACTTCTGCAAGCTATCTTAGAACA-CAGAGCTGCAGTACGCTCAGCTGTTTCCAGCTATAATCTTCCTCATTGCACCTTTGAGAAACAGAACTTGGATTGAGTATCCTCATCCAGCAAATCAAGAACTAGAACTTGTCTTCTTGCTCTTATTCCATGGGTTTTCACCCTATGCTGTGCCACCAGCACCTCCAAATATGACAGCTATGGTCATGCTTGGAGAAGTGTCTCCAAAGCTCAGTCATCTGTGGATT-------T-AGCC------------------------------------AGTTTCACCATATCCGTGTAACCTCCGGATTGAT---GTTTTtaaaataaataaaaaataaaataaaataaaTCAGttttagttacataaacatattataaaataaaaattttcat i canFam3.chr3 C 0 C 0 a score=58310.000000 s hg38.chr4_KI270790v1_alt 160747 24 + 220246 TCTTAT------AAAATTACTGT--TTTTCAT s panTro4.chr4 21548512 24 + 193495092 tcttat------aaaattaCTGT--TTTTCAT i panTro4.chr4 C 0 C 0 s nomLeu3.chr20 20335446 24 - 85365473 TCTTAT------AAAATTACTGT--TTTTCAT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16801944 24 + 184069350 tcttat------aaaattactat--ttttCAT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20851800 24 + 189454096 TCTTAT------AAAATTACTAT--TTTTCAT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16441989 24 + 178775436 tcttat------aaaattactat--ttttcat i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19925244 24 - 48547382 TCTTAT------AAAATTACTAT--TTTTCAT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21284656 23 - 190850796 TCTTAT------AAAATTGCTAT--TTTT-AC i calJac3.chr3 C 0 C 0 s mm10.chr5 49267273 26 + 151834684 TCTCCA------AAAACAAATACAATTTCCat i mm10.chr5 C 0 C 0 s canFam3.chr3 3859870 28 - 91889043 tctcatggaaagaaaattattgt----gccat i canFam3.chr3 C 0 C 0 e ponAbe2.chr4 21725339 444 + 198332218 M a score=11152.000000 s hg38.chr4_KI270790v1_alt 160771 4 + 220246 AAAT s panTro4.chr4 21548536 4 + 193495092 AAAT i panTro4.chr4 C 0 C 0 s nomLeu3.chr20 20335470 4 - 85365473 AAAC i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16801968 4 + 184069350 AAAT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20851824 4 + 189454096 AAAT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16442013 4 + 178775436 aAAT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19925268 4 - 48547382 GAAT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21284679 4 - 190850796 AAAT i calJac3.chr3 C 0 C 0 s canFam3.chr3 3859898 4 - 91889043 aaat i canFam3.chr3 C 0 C 0 e mm10.chr5 49267299 0 + 151834684 C e ponAbe2.chr4 21725339 444 + 198332218 M a score=912363.000000 s hg38.chr4_KI270790v1_alt 160775 407 + 220246 GGAAGATGCCCATAA--AAATCTCC----TGTAAACAAAATCTGGGTTTTTGtctgcactcctatgcttattgcagcactacttacaatagctaagatttggaagcaacctaattgtccatcaacagatgaatggatgaagaaaatg--tggtacacatacacagtggagtactatctagccattgaaaagaatgagatccagtcatttgtaacatcaataatgaaacagagatca--------ttatgttaag-tgaaataaacaaggcagagaaagacaaatattgcatattctcatttatttgtgggatctacaaatcaaatcaattgaactcatggatatagagagtagaatgtcggttaccagaggctggaagggagaagttgtgggggaggtgaggatgattaatgggtgcaaaaaat s panTro4.chr4 21548540 409 + 193495092 GGAAGATGCCCATAA--AAATCTCC----TGTAAACAAAATCTGGGTTTTTGtctgcactcctatgcttattgcagcactgcttacaatagctaagatttggaagcaacctaattgtccatcaacagatgaatggatgaagaaaacgaatggtacatatacacagtggagtactatctagccactgaaaagaatgagatccagtcatttgtaacatcagtaatgaaacagagatca--------ttatgttaag-tgaaataaacaaggcagagaaagacaaatattgcatattctcatttatttgtgggatctacaaatcaaatcaactgaactcatggatatagagagtagaatgtcagttaccagaggctggaagggagaagttgtgggggaggtgaggatgattaatgggtgcaaaaaat i panTro4.chr4 C 0 C 0 s nomLeu3.chr20 20335474 405 - 85365473 GGAAGATGCCCATAA--AAATCTCT----TGTAAACAAAATCTGGGTTTTTGtctgcactcctatgcttattacagcactgtttacaatagctaagatttggaagcaacctaagtgtccatcagcagatgaatggatgaagaaaatg--tggtacatatacacaatggagtactatctagccattgaaaagaatgagatccagtcatttgtaacaacaataatgaaac--agatca--------ttatgttaag-tgaaataagcaaggcagagaaagacaaatattgcatgttcttatttatttgtgggatccacaaatcaaattaattgaactcatggatatagagagtagaaggatggttaccagaggctggaagggagaagatgtgggggaggtgaggatgattaaagggtacaaaaaat i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16801972 416 + 184069350 GGAAGATGCCCATAA--AAATCTCC----TGTAAACAAAATCTGGGTTTTTGtctgcactcctatgcttattgcagcactgtttacaatagctaagatttggaagcaacctaaatgtccatcaacagatgaatggatgaagaaaatg--tggtacctatacaccgtggagtactatctagccattgaaaaggatgagatccagtcatttgtaacaacaataatgaaacagagatcattatctgtttatgtgaagataaaataagcaaggcagagaaagacaaatattgcatgttctcatttatttgtagaatctacaaatgaaatcaattgaactcatagatatagagaatagaaggatggttaccagaggctggaagggaggaattgtgggggaggtgaggatgattaatgggtacaaaaaat i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20851828 416 + 189454096 GGAAGATGCCCATAA--AAATCTCC----TGTAAACAAAATCTGGGTTTTTGtctgcactcctatgcttattgcagcactgtttacaatagctaagatttggaagcaacctaaatgtccatcaacagatgaatggatgaagaaaatg--tggtacctatacacagtggagtactatctagccattgaaaaggatgagatccagtcatttgtaacaacaataatgaaacagagatcattatctgtttatgtgaagataaaataagcaaggcagagaaagacaaatattgcatgttctcatttatttgtagaatctacaaatgaaatcaattgaactcatagatatagagaatagaaggatggttaccagaggctggaagggaggaattgtgggggaggtgaggatgattaatgggtacaaaaaat i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16442017 400 + 178775436 GGAAGATGCCCATAA--AAATCTCC----TGTAAACAAAATCTGGGTTGTTATCTACACTcctatgcttattgcagcactg-------tagctaagatttggaagcaacctaaatgtccatcaacagatgaatggatgaagaaaatg--tggtacctatacacagtggagtactaccTAGCCATTGAAAAggatgagatccagtcatttgtaACAACAATAATGAAACAGAGatca--------ttatgtgaag-tgaaataagcaaggcagagaaagacaaatattgcatgttctcatttatttgtagaatctacaaatgaaatcaattgaactcatagatatagagagtagaaggatggttaccagaggctggaagggaGGAATTGTGGGGGAGGTGaggatgattaatgggtacaaaaaat i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19925272 407 - 48547382 GGAAGATGCCCATAA--AAATCTCC----TGTAAACAAAATCTGGGTTTTTTtctgcactcctatgcttattgcagcactgtttacaatagctaagatttggaagcaacctaaatgtccatcaacagatgaatggatgaagaaaatg--tggtacctatacacagtggagtactatctagccattgaaaatgacgagatccagtcatttgtaacaataataatgaaacagagatca--------ttatgttaag-tgaaataagcaaggcagagaaagacaaatattgcatgttctcatttatttgtgggatctacaaatgaaatcaattgaactcatggatatagagagtagaaggatggttaccagaggctggaagggaggaattgtcggggaggtgaggatgattaatgggtgcaaaaaat i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21284683 412 - 190850796 GGAAGTTGCTCATAAATAAAAAACCAAAGTGTAAACAAAATCTGGGTTTTTGTGtgcacttctatgcttattgaaacactgtttacaatagctaatatttggaagcaacctaagtgtccatcaacagacgaatggataaagaaaatg--tggtatatatacacagtggagcactatctcgacattgaaaagaatgagatccagctggttgtaagaccatgaatgaaacagaggtca--------ttatattaag-tgacataagccaggatgagaaagacaagtattgcatgttctcatttatttgtgggatctacaaatcaaatcaactgaacgcatggatatggagagtagaaggatagttaccagaccctagaagaggggagctgtaggggaggtgagcatgattaacagatacaaaaaa- i calJac3.chr3 C 0 C 0 e mm10.chr5 49267299 0 + 151834684 C e canFam3.chr3 3859902 0 - 91889043 C e ponAbe2.chr4 21725339 444 + 198332218 M a score=762975.000000 s hg38.chr4_KI270790v1_alt 161182 256 + 220246 aattagaaagaatgaataagacctactatttgatagcacaatagagtgattatagtcaacaataacttaatcatatatttttaaataatttaaagaatgtagctggattgtttgtaactcaaaggataaatgcttgaggggatggacaccccattctccatgatgtgcttatttcacattgcatgcctgtatcaaaatatcttatgtatcttataaatgtatacacttactatgtactcacCAA---TTTTTTTATTAA s panTro4.chr4 21548949 257 + 193495092 aactagaaagaatgaataagacctactatttgatagcacaatagagtgattatagtcaacaataacttaatcatatatttttaaataatttaaagaatgtagctggatcgtttgtaactcaaaggataaatgcttgaggggatgcacaccccattctccatgatgtgcttatttcacattgcatgcctgtatcaaaatatcttatgtatcttataaatgtatacacttactatgtactcacCAA-T-TTTTTTTATTAA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21725786 257 + 198332218 aattagaaagaatgaataagacctactatttgatagcataacagagtgattatggtcaacaataacttaatcatatatttttaaataatttaaagaatgtagctggactgtttgtaactcaaaggataaatgcttgaggggatggacaccccattctccatgatgtgcttatttcacattgcatgcctgtatcaaaatatcttatgtatcttataaatatatacacttactatgtactcacCAA-T-TTTTTTTATTAA i ponAbe2.chr4 M 444 C 0 s nomLeu3.chr20 20335879 256 - 85365473 acttagaaagaatgaataagacctactatttgatagcacaatagagtgattatagtcaataataacttaatcatatatttttaaataatttaaagaatgtagctggattgtttataactcaaaggataaaagtttgaggggatggacaccccattctccatgatgtgcttatttcacattgcatgcctgtatcaaaatatcttatgtatcttataaatacatacacttactatgtactcacCAA---TTTTTTTATTAA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16802388 257 + 184069350 aattagaaagaatgaataagacctactatttgatagcacaacagagtgattatagtcaataataacttaatcatatatttttaaataacttaaagaatgtagctggatggtttgtaactcaaaggataaatgcttgagcggatagacaccccgttctccatgatgtgtttatttcacattgcatgcctgtatcaacatgtcttacgtatcttataaatatatacacttactatgtactcaTCAA-T-TTTTTTAATTAA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20852244 257 + 189454096 aattagaaagaatgaataagacctactatttgatagcacaatagagtgattatagtcaataataacttaatcatatatttttaaataacttaaagaatgtagctggatggtttgtaactcaaaggataaatgcttgagaggatagacaccccgttctccatgatgtgtttatttcacattgcatgcctgtatcaacatgtcttacgtatcttataaatatatacacttactatgtactcaTCAA-T-TTTTTTAATTAA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16442417 257 + 178775436 aattagaaagaatgaataagacctactatttgatagcacaatagagtgattatagtcaataataacttaatcatatatttttaaataacttaaagaatgtagCTGGAtggtttgtaactcaaaggataaatgcttgagaggatggacACCCCGTTCTccatgatgtgtttatttcacattgcatgcctgtatcaacaTGTCTTACGtatcttataaatatatacacttactatgtactcatcaa-t-ttttttaattaa i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19925679 258 - 48547382 aattagaaagaatgaataagacctactatttgatagcacaatagagtgattatagtcaataataacttaatcatatatttttaaacaacttaaagaatgtagctggattgtttgtaactcaaaggataaatgcttgagaggatggacaccccattctccatgatgtgtttatttcatattgcatgcctgtatcaacatatcttacgtatcttataaatatatacacttactatgtactcaTCAATT-TTTTTTAATTAA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21285095 255 - 190850796 aatgagaaagaatgaataagatctactctttgataccataatagagttattatagtcaataataacttaattatatgttttaaaataacttaaagaatgcaactgtattatttgtaactcaaaggaaaaatgcttgagtggatggacaccccattatcc---atgtgcttatttcacattgcatggctgcatcaaagtatctcacgtatcttataaatatatacacttattatgtactcatcaa-tattGTGTTATTAA i calJac3.chr3 C 0 C 0 e mm10.chr5 49267299 0 + 151834684 C e canFam3.chr3 3859902 0 - 91889043 C a score=30512.000000 s hg38.chr4_KI270790v1_alt 161438 9 + 220246 AAGAAAAGA s panTro4.chr4 21549206 9 + 193495092 AAGAAAAGA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21726043 9 + 198332218 AAGAAAAAA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20336135 9 - 85365473 AAGAAAAGA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16802645 9 + 184069350 AAGAAAAGA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20852501 9 + 189454096 AAGAAAAGA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16442674 9 + 178775436 aagaaaaga i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19925937 9 - 48547382 AAGAAAAGA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21285350 9 - 190850796 AAGAAAAGG i calJac3.chr3 C 0 C 0 s mm10.chr5 49267299 9 + 151834684 aaataaaag i mm10.chr5 C 0 C 0 e canFam3.chr3 3859902 0 - 91889043 C a score=3875270.000000 s hg38.chr4_KI270790v1_alt 161447 1086 + 220246 AACACCATCAAAAAATAATCTGGGCA-------------TTTTCTAAAAATTTCAATTTACCACCTTGCCTTGCTGAAGGTTGAGTTTCATATGTTTTCTCTTATGAAAAGTAGAGAGTCACATGTTT-TAGGGTGTTGATACGGACATATGTGTAGTAACTTGAGGATGTCCATTGAGGCCATCAAAAGCCTGAAAGAAAACATGAAAGGGACTGCTTCCATATTACATGATCCAACTACTTTTCAATGCCAAGTTTCAGTGTCATGTAAAATCAGCTTACTTCTACCAATATATGTATCATATACCTGGAGGACTTGTGATCTAGTCTCT---AGCAGAAAGAGAATGGGATT-TTAGCCCAAGAACAGGGTCCTAGCTTGAGCACGACCACTAAGCTGTTCAGTAAATCTGGTCTGACAACAATTATATACTGAGAAAACCATATGGAGCA--TAAAGAAACGCAATAAACTTGGTCTCCTTAGGTCTCAGGTTTCTCTG-AAAAATGATGGGACTAGGGTG------GAGCGTCACTGTG---------TCCCTT--------TCTAGAGTATGACTGCCTTCACCAGCTGTTTTTATTATCAACATTT--TTGAAACTTTTACATTTTACTTCCCACAGTCAGAGAACTTCTAAAGCCCCAAAGGACTGCCACCTCACGTTTAACAAAGATAAATTAGAA-AATATGAAATGAATGCTATCATCTTCC---TAACATGATAACCTCAATATAA-ACTTAAGAGTGACATTTCCAAAGTCAAATCATAATCTGGATAAGTTGTCCTCAAGTCTTGTCAAAAGACGACTCTTCCCT-TGGAAATCCTAGTGAAGGTACCCAATTGCCTCTCCATTCTTGTTAAAGAATGATTATTTTTAGATGAACAGGAGATCCTACTTTCC---TCCCATTGCAGCAGAGATATTTCACA---CTT-TTTCAAC-----TAGTCCAAATTCAAAAT--GGTTATTCCTTAAAGATTCTGTCACCAGAAATATACTCATTCAAGGAACTTTGTACTCTGTCATATGTGAATAAATC-----AGCTTCATGTTCCAGGTCTATTTTATGCTATGTAACT----TTTTTGTAGACAACATTAATGAGATTTTAGTCTATCCTGTTATTC s panTro4.chr4 21549215 1086 + 193495092 AACACCATCAAAAAATAATCTGGGCA-------------TTTTCTAAAAATTTCAGTTTACCACCttgccttgctgaaggttgagtttcatatgttttctcttatgaaaagtagagagtcacatgttt-tagggtgttgatacggacatatgtgtagtaacttgaggatgtccactgaggccatcaaaagcctgaaagaaaacatgaaagggactgcttccatattacatgatccaactacttttcaatgccaagtttcagtgtcatgtaaaatcagcttacttctaccaatatatgtatcatatacctggaggaCTTGTGATCTAGACTCT---AGCAGAAAGAGAATGGGATT-TTAGCCCAAGAACAGGGTCCTAGCTTGAGCACGACCACTAAGCTGTTCAGTAAATCTGGTCTGACAACAATTATATACTGAGAAAACCATATGGAGCT--TAAAGAAACGCAATAAACTTGGTCTCCTTAGGTCTCAGGTTTCTCTG-AAAAATGATGGGACTAGGGTG------GAGCGTCACTGTG---------TCCCTT--------TCTAGAGTATGACTGCCTTCACCAGCTGTTTTCATTATCAACATTT--TTGAAACTTTTACATTTTACTTCCCACAGTCAGAGAACTTCTAAAGCCCCAAAGGACTGCCACCTCACCTTTAACAAAGATAAATTAGGA-AATATGAAATGAATGCTATCATCTTCC---TAACATGATAACCTCAATATAA-ACTTAAGAGTGACATTTCCAAAGTCAAATCATAATCTGGATAAGTTGTCTTCAAGTCTTGTCAAAAGATGACTCTTCCCT-TGGAAATCCTAGTGAAGATACCCAATTGCCTCTCCATTCTTGTTAAAGAATGATTATTTTTAGATGAACAGGAGATCCTACTTTCC---TCCCATTGCAGCAGAGATATTTCACA---CTG-TTTCAAC-----TAGTCCAAATTCAAAAT--GGTTATTCCTTAAAGATTCTGTCACCAGAAATATACTCATTCAAGGAACTTTGTACTCTGTCATATGTGAATAAATC-----AGCTTCATGTTCCAGGTCTATTTTATGCTATGTAACT----TTTTTGTAGACAACATTAATGAGATTTTAGTCTATTCTGTTATTC i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21726052 1086 + 198332218 AACACCATCAAAAAATAATCTGGACA-------------TTTTCTAAAAATTTCAGTTTACCACCttgccttgctgaaggttgagtttcatatgttttctcttatgaaaagtagaaagtcacatgttt-tagggtgttgatatggacatatgtgtagtaacttgaggatgtccactgaggccatcaaaagcctgcaagaaaacacaaaacggactgcttccatattacatgatccaactacttttcaatgccaagtttcagtgtcatgtaagatcagcttacTTCTAACAATATATGTATCATATACCTGGAGGACTTGTGATCTAGACTCT---AGCAGAAAGAGAATGGGATT-TTAGCCCAAGAATAGGGTCCTAGCTTGAGCATGATCACTAAGCTGTTCAGTAAATCTGGTCTGACAACAATTATATACTGAGAAAACCATATGGAGCA--TCAAGAAACTCAATAAACTTGGTCTTCTTAGGTCTCAGGTTTCTCTG-AAAAATGATGGGACTAGGGTG------GAGCATCACTTTG---------TCCCTT--------TCTAGAGTATGACTGCCTTCACCAGCTGTTTTCATGATCAACATTT--TTGAAACTTTTACATTTTACTTCCCACAGTCAGAGAACTTTGAAGGCCCCAAAGGACTGCCACCTCACCTTTAACAAAGATAAATTAGAA-AATATGAAATGAATGCTATCATCTTCC---TAACATAATAACCTCAATACAA-ACTTAAGAGTGACATTTCCAAAGTCAAATCATAATCTGGATAAGTTGTCTTCAAGTCTTGTCAAAAGATGACTCTTCCCT-TGGAAATCCTAGTGAAGATACCCAATTGCCTCTCCATTCTTGTTAAAGAAGGATTATTTTTAGATGAACAGGAGATCCTACTTTCC---TCCCATTGCAGCAGAGATATTTCACA---CTT-TTTCAAC-----TAGTCCAAATTCAAAAT--GGTTATTCCTCAAAGATTCTGTCACCAGAAATATACTCATTCAAGGAACTTTGTACTCTGTCATATGTGAATAAATC-----AGCTTCATGTTCCAGGTCTATTTTATGCTATGTAACT----TTTTTGTAGGCAATATTAATGAGATTTTAGTCTATTCTGTTATTC i ponAbe2.chr4 C 0 I 257 s nomLeu3.chr20 20336144 1077 - 85365473 AACGCCATCAAAAAATAATCTGGGCA-------------TTTTCTAAAAATTTTGATTTACCACCTTGCCATGCTGAAGGTTGAGTTTCATATGTTTTCTCTTATGAAAAGTAGAGAGTCACATGTTT-TAGGGTGTTGACACGGACATATGTGTAGTAACTTGAGGATGTCCACTGAGGCTATCAAAAGCCTGAAAGAAAGCATGAAAGGGACTGCTTCCATATTACATGATCCAGCTACTTTTCAATGCCAAGTTTCAGTGTCATATAAAACCAGCTTACTTCTACCAACATATGTATCATATACCTGGAGGACTTGTGATCTAGACTCT---AGCAGATAGAGAATGGGATT-TTAGCCCAAGAACAGGATCCTAGCTTGAGCACGACCACTAAGCTGTTCAGTAAATCTGGTCTGACAACAATTATATACTGAGAAAACCATATGGAGCA--TCAAGAAACTCAATAAACTTGGTCTCCTTAGGTCTCAGGTTTCTCTG-AAAAATGATGGGACTAGGGTG------GAGCGTCACTGTG---------TCCCTT--------TCTAGAGTATGACTGCCTTCACTAGCTGTTTTCATTATCAACATTT--CTGAAACTTTTATATTTTACTTCCCACAGTCAGAGAACTTTTAAAGCCCCAAAGGACTGCCACCTCACCTTTAACAAAGATAAATTAGAA-AATATGAAATGAATGCTATCATCTTCC---TAACATGATTACCTCA----------TGTTAGTGACATTTCCAAAGTCAAATCATAATCTGGATAAGTTGTCTTCAAGTCTTGTCAAAAGATGACTCTTCCCT-TGGAAATCCTAGTGAAGATACCCAATTGCCTCTCCATTCTTGTTAAAGAATGATTATTTTTAGACGAACAGGAGATCCTACTTTCC---TCCCATTGCAGCAGAGATATTTCACA---CTT-TTTCATC-----TAGTCCAAATTCAAAAT--GGTTATGCCTTATAGATTCTGTCACTAGAAATATACTCATTCAAGGAACTTTGTACTCTGTCACATCTGAATAAATC-----AGCTTCATGTTCCAGGTCTATTTTATGCTATGTAACT----GTTTTGTAGACAATATTAATGAGATTTTAGTCTATTCTGCTATTC i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16802654 1072 + 184069350 AACACCATCAAAAAATAATCTGGGCA-------------TTTTCTAAAAATTTCAGTTTACCACCTCGCcttgctgaaggttgagtttcatatgttttctcttatgaaaagcagagagtcacatgttt-ta-ggtgttgatacagatatatgtgtagcaacttgaggatgccccctgaggctatcaaaagcctgaaagaaaacatgaaagggactacttccatattacacgatccaactgcttttcaatgccaagtttcagtgtcatgtaaaatcagcttacttctaccaatATGTGTATCATATATCTGGAGGACTTGTGATCTAGACTCT---AGCAGAAAGAGAATGGGATT-TTAGCCCAAGAACGGGGTCCTAGTTTGAGTACGACCACTAAGCTGCTCAGTAAAGCTGATCTGACAGCAATTATATACTGAGAAAACCATATGGAGCA--CCAAGAAACTCAATGAACTTGGTCTCCTTA--------ATTTCTCTG-AAAAATGATGGGACTAGGGTG------GAGCGTCACTATG---------CCTCTT--------TCTAGAGTATGACTGCCTTCACCAGCTGTTTTCATTATCAACATTT--TTGAAACTTTTGCATTTTACTTCCCA----CAGAGAACTTTTAAAGCCCCAAAGGACTGCCACCTCACCTTTAACAAAGATAAATTAGAA-AATATGAAATGAATGCTATCATCTTCC---TAACATGATTACCTCAATATAA-ACTTAAGAGTGACATTTCCAAAGTCAAATTATAATCTGGATAAGTTGTCTTCAAGTCTTGTCAAAAGATGACTCTTCCCT-TGGAAATCCTAGTGAAGAGACCCAATTGCCTCTCCATTCTTGTTAAAGAATGATTATTTTTAGATGAACAGGAGATCCTACTTTCT---TCCCATTGCAGCAGAGATATTTCACA---CTT-TTTCAAC-----TAGTCCAAATTCAAAAT--GGTTATGCCTTAAAGATTCTGTCACCACAAATATACTCATTCAAGGAACTTTGTACTCTGTCATATGTGAATAAATC-----AGCTTCGTGTTCTAGGTCTATTTTATGCTATGTAACT-----TTTTGTAGACTGTATTAATGAGATTTTAGTTTATTCTGTTATTC i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20852510 1076 + 189454096 AACACCATCAAAAAATAATCTGGGCA-------------TTTTCTAAAAATTTCAGTTTACCACCTCGCCTTGCTGAAGGTTGAGTTTCATATGTTTTCTCTTATGAAAAGCAGAGAGTCACATGTTT-TA-GGTGTTGATACAGATATATGTGTAGTAACTTGAGGATGCCCCCTGAGGCTATCAAAAGCCTGAAAGAAAACATGAAAGGGACTACTTCCATATTACACGATCCAACTGCTTTTCAATGCCAAGTTTCAGTGTCATGTAAAATCAGCTTACTTCTACCAATATGTGTATCATATATCTGGAGGACTTGTGATCTAGACTCT---AGCAGAAAGAGAATGGGATT-TTAGCCCAAGAACGGGGTCCTAGTTTGAGTACGACCACTAAGCTGCTCAGTAAAGCTGATCTGACAGCAATTATATACTGAGAAAACCATATGGAGCA--CCAAGAAACTCAATGAACTTGGTCTCCTTA--------ATTTCTCTG-AAAAATGATGGGACTAGGGTG------GAGCGTCACTATG---------CCCCTT--------TCTAGAGTATGACTGCCTTCACCAGCTGTTTTCATTATCAACATTT--TTGAAACTTTTGCATTTTACTTCCCACAGTCAGAGAACTTTTAAAGCCCCAAAGGACTGCCACCTCACCTTTAACAAAGATAAATTAGAA-AATATGAAATGAATGCTATCATCTTCC---TAACATGATTACCTCAATATAA-ACTTAAGAGTGACATTTCCAAAGTCAAATTATAATCTGGATAAGTTGTCTTCAAGTCTTGTCAAAAGATGACTCTTCCCT-TGGAAATCCTAGTGAAGAGACCCAATTGCCTCTCCATTCTTGTTAAAGAATGATTATTTTTAGATGAACAGGAGATCCTACTTTCT---TCCCATTGCAGCAGAGATATTTCACA---CTT-TTTCAAC-----TAGTCCAAATTCAAAAT--GGTTATGCCTTAAAGATTCTGTCACCACAAATATACTCATTCAAGGAACTTTGTACTCTGTCATATGTGAATAAATC-----AGCTTCGTGTTCTAGGTCTATTTTATGCTATGTAACT-----TTTTGTAGACTGTATTAATGAGATTTTAGTTTATTCTGTTATTC i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16442683 1075 + 178775436 aacaccatCAAAAAATAATCTGggca-------------ttttctaaaaatttcaaTTTACCACCTCGCCTTGCTGAAGGTTGAGTTTCATATGTTTTCTCTTATGAAAAGCAGAGAGTCACAT-TTT-TA-GGTGTTGATACAGATATATGTGTAGTAACTTGAGGATGTCCCCTGAGGCTATCAAAAGcctgaaagaaaacatgaaaggGACTACTTCCATATTACACGATCCAACTGCTTTTCAATGCCAAGTTTCAGTGTCATGTAAAATCAGCTTACTTCTACCAATATGTGTATCATATATCTGGAGGACTTGTGATCTAGACTCT---AGCAGAAAGAGAATGGGATT-TTAGCCCAAGAACGGGGTCCTAGTTTGAGTATGACCACTAAGCTGCTCAGTAAATCTGATCTGACAGCAATTATATACTGAGAAAACCATATGGAGCA--CCAAGAAACTCAATAAACTTGGTCTCCtta--------atttctctg-aaaaatgaTGGGACTAGGGTG------GAGCGTCACTATG---------CCCCTT--------TCTAGAGTATGACTGCCTTCACCAGCTGTTTTCATTATCAACACTT--TTGAAACTTTTGCATTTTACTTCCCACAGTCAGAGAACTTTTAAAGCCCCAAAGGACTGCCACCTCACCTTTAacaaagataaattagaa-aatatgaaatgaatgCTATCATCTTCC---TAACATAATTACCTCAATATAA-ACTTAAGAGTGACATTTCCAAAGTCAAATTATAATCTGGATAAGTTGTCTTCAAGTCTTGTCAAAAGATGACTCTTCCCT-TGGAAATCCTAGTGAAGAGACCCAATTGCCTCTCCATTCTTGTTAAAGAATGATTATTTTTAGATGAACAGGAGATCCTACTTTCT---TCCCATTGCAGCAGAGATATTTCACA---CTT-TTTCAAC-----TAGTCCAAATTCAAAAT--GGTTATGCCTTAAAGATTCTGTCACCACAAATATACCCATTCAAGGAACTTTGTACTCTGTCATATGTGAATAAATG-----AGCTTCGTGTTCTAGGTCTATTTTATGCTATGTAACT-----TTTTGTAGACTGTATTAATGAGATTTTAGTTTATTCTGTTATTC i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19925946 1085 - 48547382 AACACCATCAAAAAATAATCTGGGCA-------------TTTTCTAAAAATTTCAATTTACCACCTCGCCTTGCTGAAGGTTGAGTTTCATATGTTTTCTCTTATGAAAAGTAGAGAGTCACATGTTT-TAGGGTGTTGATACAGATATATGTGTAGTAACTTGAGGATATCCACTGAGGCTATCAAAAGCCTGAAAGAAAACATGAAAGGGACTACTTCCATATTACACGATCCAACTACTTTTCAATGCCAAGTTTCAGTGTCATGTAAAATCAGCTTACTTCTACCAATATGTGTATCATATATCTGGAGGACTTGTGATCTAGACTCT---AGCAGAAAGAGAATGGGATT-TTAGCCCAAGAACGGGGTCCTAGTTTGAGTACGACCACTAAGCTGCTCAGTAAATCTGATCTGACAGCAATTATATACTGAGAAAACCATACGGAGCA--CCAAGAAACTCAATAAACTTGGTCTCCTTAGGTCTCAGGTTTCTCTG-AAAAATGATGGGACTAGGGTG------GAGCGTCACTGTG---------CCCCTT--------TCTAGAGTATGACTGCCTTCACCAGGTGTTTTCATTTTCAACATTT--TTGAAACTTTTGCATTTTACTTCCCACAGTCAGAGAACTTTTAAAGCCCCAAAGGACTGCCACCTCACCTTTAACAAAGATAAATTAGAA-AATATGAAAGGAATGCTATCATCTTCC---TAACATGATTACCTCAATATAA-ACATAAGAGTGACATTTCCAAAGTCAAATTATAATATGGATAAGTTGTCTTCAAGTCTTATCAAAAGATGACTTTTCCCT-TGGAAATCCTAGTGAAGATACCCAATTGCCTCTCCATTCTTGTTAAAGAATGATTATTTTTAGATGAACAGGAGATCCTACTTTCC---TCTCATTGCAGCAGAGATATTTCACA---CTT-TTTCAAC-----CAGTCCAAATTCAAAAT--GGTTATGCCTTAAAGATTCTGTCACCACAAATATACTCATTCAAGGAACTTTGTACTCTGTCATGTGTGAATAAATC-----AGCTTCGTGTTCTAGGTCTATTTTATGCTAGGTAACT-----TTTTGTAGACTGTATTAATGAGATTTTAGTTTATTCTGTTATTC i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21285359 1073 - 190850796 AGCATCATCAAAAAATAATCTGGATA-------------TTTTCTCGAAATTTCAATTTACCACCttgccttgctgaagactgagtctcataggtttgctcttgtgaaaaatggcgagtcataggttt-tagggtgttgatacagatatatttttaataacttgaggatgtccactgaagctaacaaaagactgaaagtcaacatgaaagggactacttccatattacacgatccaactacttttcaatgcccagtttcagtgtcatgtaaaatcaacctacttaaaccaatgtatgcatcatacacttggaggaCCTGTGATCTAGTCTCT---AGCAGAAAGAGAATGGAATC-TTAGCCGAAGAACAGGGTCCTAGCTTgagcacggccactaagctgttcagtaaatctggtctgacaacaaatatatactgagaggactgtatggagcc--ttatggaactcaataaacttggtctccttaggtctcaggtttctctgaaaaaatgataggactgaaatg------gagcatcactgtg---------tccctt--------tctagactatgacTGCCTTCGTCAGCTGTTTTCATCATTGACATTT--TTGAAAATTTTTCATTTTACTTACCACAGTTAGAGAACTTTTAAAGCCCCAAAGGACTACCGTCTCACCTTTAACAAAGATCAATTAGAA-AATATGAAATGAATGCTACC-TCTTCC---TAACATGATTACCTCAATATAA-ACTTAAGAGTGACATTTCCAAAGCCAAATCATCATCTGCAGAAGTTGTCTTCAAGTCTTGTCAAAAGATGACTCTTCCCT-TGGAAATTCTAGTGAAGATACCCAATCGTCTCTTCATTCTTGTTAAATAATGATTATTTTTAGATGAACAAGAGATCCTACTTTCC---TCTCATTGCAGCAAAGATATTTCACA---CTT-TTTAAAC-----TAGTCCAAATTCAGAAT--GGTTATACCTTAAAGATTCTGTCACCAGAAACATACTCATTCAAGGAACTTTGTACTCTGTCATATATGAATAAATC-----GGCTTTGTGTTCAAGGTCTATTTTATGCTATGTAACT-----------------TATTTATGAGACTTTAGTTTACACTATTATCC i calJac3.chr3 C 0 C 0 s mm10.chr5 49267308 1033 + 151834684 aatattat--aaaaataattttGTAAGCAATAGCTCAGTTTCTTCTAAAGCTTAGATGCCCTCCATTGTCTGGCTGTGGGCTGGTGCCTGTGTTTGTTCTCCTGAGACAAACAGTGAGGCATAGGTTTGTTGAGGGATGAAGAAGGTATG--------GATTTCAGA--GGCCACTGATGCTACCAAAGGACTAAATGAAAACACAAAGGAAGTTT------TATTATGTAATCCAACTACATTTTAACAGCAAGTCTGAGTA-----------AAGTTCATATCTACCTAAGAATGCATTATAATCTTATAGAGTGATGGCTATAGACTTTTAAAGACAAAAAACAATGAATTA-TTACCAAGAGAATGA--------------------CACTGAAGTATAAAGCACATCTAGTCTGTCAACAAAAATATACTGAGATGACTATACAAACTAAGCCCTGACATTTAATACACTTGACATCC-TGGGCCCTAGCTTCCTCTA-GAAGGTGACGGGA-TACAGGA------GAGCATCTCTGATTTCAACTACTCTATT--------TCCA------GACTCCCTTTCTGGAATGTTTTC--CACCAGTATTTAGCTCAAAGTTTTACA-TTTGTTTCCAACG--TAAAGAACTTCTAA--CCATTATAAATTTCTCCCC--------ACAAAGAAAAATAAGAACCATGTTAATTTTTTTTTATAATCTTCCAAGCAACTTTATTACCTCAATACAA-ATATCAGGGTCAGATTTTCTCCCTCCAACTAGACTCTAACTA----------------TGCCCAGAGATGGCTGTTTCCTGTGGAAATCCTAGGAAA------TAGTTGCCTCTCCTCTTTTAGTTAAAGATGTTTACTTTAAGATGAACAAGAGGTACTACTTT-----TCCCATCTCAGCAGAAATATTTCACAGTTCTT-TTTCACCAGTAGAAATTCAAATTAAAAAT--ACTCATGTCTGAAATAGTCTGTCACCCAAAATATAGTCATTCAAGAAACTTTTTA-----TCATCTATGAATAAGTCCAGCTACCTCTTTGTGTAAAGTCTATTCTATTCTATGATACT----GCTTTTTAGATCAAGTCCCAAAGAATACATCTTACTTTGACTTTC i mm10.chr5 C 0 C 0 s canFam3.chr3 3859902 1097 - 91889043 aacaccttataaatcaaatgtgggta-------------tattctcaaaatttaggtttctcctcttgccttgctgaagaccaaatctcagttcttctctcttgttaaaaacag--agtccaaggttt-ctgactgatgataaagatagatttgcaggagctc-agggtattcac-aatactatcaaaagattgaaagaaattatgaaaggg-ctacctccttgttatatcctccaactgctgttgactgccaagtctgagtgccatgtaaaatcagcttacttacaccaACATTGGCATCAGACACTAGGAGGACTTGTAGTCTACATTCT---AGCAGAAATAGAAAGGGGTTCTTAGCCAGAGAAT-GGTTTCTTGCCCAAACATAGCAATTGAATCTTTAGATAAATCCAGTCTAACAACAAGGATATACTGAGACAACGATGCAGAGCA--TCAAGGCAGCCAATGAACTTGGCCTCCTGGGGCCTCCAGTTCCTCTG-AAAAATGACAGGAATGGATTGAGTTTCGGGAGTCACTGCC---------TCCCATTACAAGACTCTGGAGT-TCACTGTCTTCTTCA-CTCTTTTCATTATCAACATTT--GTGACACTTGTGTCTTTTACTGATCAGAGTTAAGAAACTTTGGAGGCATACTAAGA-----ACCTTCCTTTTAAGAAAAATAAACCAGAA-AATAGGAAATGAATCTTATCCTCCTCC---TAACTCAACTACCTGCCTATAATACTT--GAGTGACATTTCCAAAGTTAAATTATAACCTAGATAAGTCATCCTCAAATCTTGTCCACAAATGACTCTTCCTT-TGGAAATTCTAGTGAGGCTACTCAATTACCTTTCCATTCTGGGTAAAGAATGATTATTTTTAGATGAACAACAGATCCTACTTTCCCCTCCTCATTGCAGCAGAGATATTTCACG---CTTCTTTTAAC-----TAGTCCAAATTCAGAATACAGCAATGTCTGAAAGATCCTGTCAACAGAAATATATTCATTCAAGGAATGTTGTATTCTTTCATATATGAATAAATC-----AGCTCTGGGTTTGAAGACTATTTTATACTATGTAACTCCTTCTTTCTTAAAGAAGACTTATGAGATTTTAGCCCACTCTATTCTTC i canFam3.chr3 C 0 C 0 a score=59302.000000 s hg38.chr4_KI270790v1_alt 162533 22 + 220246 CTATATTGGAG-TGTTTTGTGTT s panTro4.chr4 21550301 22 + 193495092 CTATATTGGAG-TGTTTTGTGTT i panTro4.chr4 C 0 C 0 s nomLeu3.chr20 20337221 22 - 85365473 CTATATTGGAG-TGTTTTGTGTT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16803726 22 + 184069350 CTATATTGGAG-TGTTTTGTGTT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20853586 22 + 189454096 CTATATTGGAG-TGTTTTGTGTT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16443758 22 + 178775436 CTATATTGGAG-TGTTTTGTGTT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19927031 22 - 48547382 CTATATTGGAG-TGTTTTGTGTT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21286432 22 - 190850796 CAATATTGGAG-CATTTTGTGTT i calJac3.chr3 C 0 C 0 s mm10.chr5 49268341 9 + 151834684 --------------TTTGGAGTT i mm10.chr5 C 0 C 0 s canFam3.chr3 3860999 23 - 91889043 CTATATTTGGGCTGTTCTGTGTC i canFam3.chr3 C 0 C 0 e ponAbe2.chr4 21727138 257 + 198332218 I a score=3466584.000000 s hg38.chr4_KI270790v1_alt 162555 934 + 220246 TTGAC-TTACTTATCATAGCTTGTATTTACAAAGATGGGACTCAG----------TAAAGTTGGAAAATATATGTTATGAAGCAAATTTATATAAC--TGGACATAACCCATGAAATACTGAGTATGTCTTTAAATATATCAGATAAAATTACATAATTAATACTGCAATCACATTTTATGA-AATAAAGG-TTT-------TTTAAAGGAAAGAGCAAAAATATCTCTAAGAGTTATAACTGAG------------------------------ATTGTCTTTTTCATCCATCAATCTTCTAAAGTATATGTTCCAGAAAAAAAAAA-------AAAACATGGTGCACTAAATCTTAGCAAAGATAATGGATTTCTACAGAAGTACCT------T------AAGATCAGAGATATAGATTATGAAAGCAGTCCATT-AAAAAAACAGAAATGCCAAGTTAGACATTTTGGCTTTT-ACAAATAAATGTGAATT---------ACATAAGTT-AAAATCCAGATTCTGAGTCCCTCAGACCACTTAGGGATTACTGACAG-------------------------------------TCTTCTTTTGAGTTCTTATTTTCAATATTACACATCCAAAGGCTTAACTTGTAAAA-GGCATCTGGCCTGATTCACTTGAAGAATTCTATTTTAATTCAAAGGGTATATAATTAGAATACTAGTATT-CTAGCACTTCAAGATATTTTTAAAGTTGTTTGAAAACTGCTATATTATCACAGAAGGTTCCTCACTGGCACAGAAAATGGAAAAGTTGCTCAATGTGTTCAGGATGCTCTTGAAGCTACCTCTT-TATTGCTTTCCTCTCTTCATTTCCAGGCCATCA--GTACCTCTTGAATCTACCATCACTGCCAGTTCCCTGCA------------------------------------------------------------------------------------------------GCCATCT-GCTGCCAATAGGGTTTCCTAAAGCATTGCTGCAATGGTGG-AGCCTCTCCACTCAAAGGCCTGTAGGGCATCCTGTTCCACTGGTATGCATGCCAATGCCATGACCCCTCCCTGATCCATATTTCCAATC s panTro4.chr4 21550323 937 + 193495092 TTGAC-TTACTTATCATAGCTTGTATTTACAAAGATGGGACTCAG----------TAAAGTTGGAAAATATATGTTATGAAGCAAATTTGTATAAC--TGGACATAACCCATGAAATACTGAGTATGTCTTTAAATATATCAGATAAGATTACATAATTAATACTGCAATCACATTTTATAA-AATAAAGG-TTT-------TTTAAAGGAAAGAGCAAAAATATCTCCAAGAGTTATAACTGAG--------------------------ATTAATTGTCTTTTTCATCCATCAATCTTCTAAAGTATATGTTCCAG-AAAAAAAAA-------AAACCATGGTGCACTAAATCTTAACAAAGATAATGGATTTCTACAGAAGTACTT------T------AAGATCAGAGATATAGATTATGAAAGTAGTCCATT-AAAAAAACAGAAATGCCAAGTTAGACATTTTGGCTTTT-ACAAATAAATGTGAATT---------ACATAAGTT-AAAATCTAGATTCTGAGTCCCTCAGACCACTTAGGGATTACTGACAG-------------------------------------TCTTCTTTTGAGTTCTTATTTTCAATATTACACATCCAAAGGCTTAACTTGTAAAA-GGCATCTGGCCTGATTCACTTGAAGAATTCTATTTTAATTCAAAGGGTATATAATTAGAATACTAGTATT-CTAGCACTTCAAGATATTTTTAAAGTTGTTTGAAAACTGCTATATTATCACAGAAGGTTCCTCACTGGCACAGAAAATGGAAAAGTTGCTCAATGTGTTCAGGATGCTCTTGAAGCTACCTTTT-TATTGCTTTCCTCTCTTCATTTCCAGGCCATCA--GTACCTCTTGAATTTACCATCACTGCCAGTTCCCTGCA------------------------------------------------------------------------------------------------GCCATCT-GCTGCCAATAGGGTTTCCTAAAGCATTGCTGCAATGGTGG-AGCCTCTCCACTCAAAGGCCTGTAGGGCATCCTGTTCCACTGGTATGCATGCCAATGCCATGACCCCTCCCCGATCCATATTTCCAATC i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21727395 933 + 198332218 TTGAC-TTACTTATCATAGCTTGTATTTACAAAGATGGGACTCAA----------TAAAGTTGGAAAATATATGTTATGAAGCAAATTTGTATAAC--TGGACATAACCCATGAAATACTGAGTATGTCTTTAAATACATCAGATAAGATTACATAATTAATACTGCAATCACATTTTATAA-AATAAAGG-TTT-------TTTAAAGGAAAGAGCAAAAATGTCTCTAAGAGTTATAACTGAG--------------------------ATTAATTGTCTTTTTCATCCATCAATCTTCTAAATTATATGTTCCAG--AAAAAAAA-------AAAACATGGTGCACTAAATCTTAGCAAAGATAATGGATTTCTACAGAAGTACTT------T------AAGATCGGAGATATAGATTATGAAAGTAGTCCATT--AAAAAACAGAAACGCCAAGTTAGACATTTTGGCTTTT-ACAAATAAATGTGAATT---------ACATAAGTT-AAAATCCAGATTCTGAGTCCCTCAGACCATTTAGGGATTACTGACAG-------------------------------------TCTTCTTTTGGGTTCTTATTTTCAATATTACACATCCAAAGGCTTAACTTGTAAAA-GGCATCTGGCCTGATTCACTTGAAGAATTCTATTTTAATTCAAAGGGTATATAATTAGAATACTAGTATT-CTAGCACTTCAAGATATTTTTAAAGTTGTTTGAAAACTGCTATATTATCACAGAAGGTTCCTCACTGGCACAGAAAACGGAAAAGTTGCTCAATGTGTTCAGGATGCTTTTGAAGCTACCTTTT-TATTGCTTTCCTCTCTTCATTTCCAGGCCATCA--GTACCTCTTGAATTTACCATCACTGCCAGTT-CCTGCA------------------------------------------------------------------------------------------------GCCATCT-GCTGCCAAAAGGGTTTCCTAAAGCATTGCTGCAATGGTGG-AGTCTCTCCACTCAAAGGCCTGTAAGGCATCC-GTTCTGCTGGTATGCATGCCGATGCCACGACCCCTCCCCAATCCATATTTCCAATC i ponAbe2.chr4 I 257 C 0 s nomLeu3.chr20 20337243 945 - 85365473 TTGAC-TTACTTATCATAGCTTGTATTTACAAAGATGGGACTCAA----------TAAAGTTGGAAAATATATGTTATGAAGCAAATTTGTATAAC--TGGACATAACCCATGAAATACTGAGTATGTCTTTAAATATATCAGATAAGATTATATAATTAATACTGCAATCACATTTTATAA-AATAAAGG-TTT-------TTTAAAGGAAAGAGCAAAAATATCTCTAAGAGTCATAACTGAG--------------------------ATTAATTGTCTTTTTCATCCATCAATCTTCTAAAGTACATGTTCCAG-AAAAAAAAA-------AAAACATGGTGCACTAAATCTTAGCAAAGATAATGGATTTCTACAGAAGTACTT------T------AAGATCAGAGATACAGATTATGAAAGTAGTCCATT-AAAAAAACAGAAATGCCAAGTTAGACATTTTGGCTTTT-ACAAATAAATGTGAATTTTTTTTTTGACATAAGTCAAAAATCCAGATTCTGAGTCCCTCAGACCATTTAGGGATTACTGACAG-------------------------------------TCTTCTTTTGAGTTTTTATTTTCAATATTACACATCCAAAGGCTTAACTTGTAAAA-GGCATCTGGCCTGATTCACTTGAAGAATTCTATTTTAATTCAAAGGGTATATAATTAGAATACTAGTATT-CTAGCACTTCAAGATATTTTTAAAGTTGTTTGAAAACTGCTATATTATCACAGAAGGTTCCTCACTGGCACAGAAAATGGAAAAGTTGCTCAATGTGTTCAGGATGCTCTTGAAGCTACCTTTT-TGTTGCCTTCCTCTCTTCATTTCCAGGCCATCA--GTACCTC--GAATTTACCATCACTGCCAGTTCCCTGCA------------------------------------------------------------------------------------------------GCCATCT-GCTGCCAGTAGGGTTTCCTAAAGCATTGCTGCAATGGTGG-AGCCTCTCCACTCAAAGGCCTGTAGGGCATCCTTTTCCACTGGTATGCATGCCAATGTCACGACCCCTCCCCAATCCATATTTCCAATC i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16803748 932 + 184069350 TTGAC-TTACTTATCATAGCTTATATTTACAAAGATGGGACTCAA----------TAAAGTTGGAAAATGTATGTTACGAAGCAAATGTGTATAAC--TGGACATAATCCATGAAATACTGAGTACATCTTTAAATATATCAGATAAGATTATGTAATTAATACTGCAATCACATTTTATAA-AATAAAGG-TTT-------TTTAAAGGAAAGAGCAAAAATATCTCTAAGAGTTATAACTGAG------------------------------ATTGTCTTTTTCATCCATCAATCTTCTAAAGTATATGTT-CAG---AAAAAAA-------AATACATCGTGCACTAAATCTTAGCAAAGATAATGGATTTCTACAGAAGTACTT------T------AAGATCAGATATACAGATTATGAAAGTAGTCTATTAAAAAAAACAGAAATGCCAAGTTAGACATTTTGGCTTTT-ACAAATAAATGTGAATT---------ACATAAGTTAAAAATCCAGATTCTGAGTCCCTCAGAGCATTTAGGGATTACTGACAG-------------------------------------TCTTCTTTTGAGTTCATATGTTCAATATTACACATCCAAAGGCTTAACTTGTAAAA-GGCATCTGGCCTGATTCACTTGAAGAATTCTATTTTAATTCAAAGGGTATATAATTAGAATACTAGTATT-CTAGCACTTCAAGATATTTTTAAAGTTGTTTGAAAACTGCTATATTATCACAGAAGGTTCCTCACTGGCACAGAAAATGGAAAAGTTGCTCAATGTGTTCAGGATGCTCTTGAAGCTACCTTTT-TATTGCCTTCCTCTCTTCATTTCCAGGCCATCA--GTACCTCTTGAATTTACCATCACCACTAGTTCCCTGCA------------------------------------------------------------------------------------------------GCCATCT-GCTACCAATAGGGTTTCCTAAAGCATTGCTGCAATGGTGA-GGCCTCTCCACCCAAAGGCCTGTAGGGCATCCTGTTCCACTGGAATGTATGCCAATGCCACAAGCCCTCCCCAGTCCATATTTCCAATC i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20853608 932 + 189454096 TTGAC-TTACTTATCATAGCTTATATTTACAAAGATGGGACTCAA----------TAAAGTTGGAAAATGTATGTTACGAAGCAAATGTGTATAAC--TGGACATAATCCATGAAATACTGAGTACGTCTTTAAATATATCAGATAAGATTATGTAATTAATACTGCAATCACATTTTATAA-AATAAAGG-ATT-------TTTAAAGGAAAGAGCAAAAATATCTCTAAGAGTTATAACTGAG------------------------------ATTGTCTTTTTCATCCATCAATCTTCTAAAGTATATGTT-CAG---AAAAAAA-------AATACATCGTGCACTAAATCTTAGCAAAGATAATGGATTTCTACAGAAGTACTT------T------AAGATCAGATATACAGATTATGAAAGTAGTCTATTAAAAAAAACAGAAATGCCAAGTTAGACATTTTGGCTTTT-ACAAATAAATGTGAATT---------ACATAAGTTAAAAATCCAGATTCTGAGTCCCTCAGAGCATTTAGGGATTACTGACAG-------------------------------------TCTTCTTTTGAGTTCATATGTTCAATATTACACATCCAAAGGCTTAACTTGTAAAA-GGCATCTGGCCTGATTCACTTGAAGAATTCTATTTTAATTCAAAGGGTATATAATTAGAATACTAGTATT-CTAGCACTTCAAGATATTTTTAAAGTTGTTTGAAAACTGCTATATTATCACAGAAGGTTCCTCACTGGCACAGAAAATGGAAAAGTTGCTCAATGTGTTCAGGATGCTCTTGAAGCTACCTTTT-TATTGCCTTTCTCTCTTCATTTCCAGGCCATCA--GTACCTCTTGAATTTACCATCACCACTAGTTCCCTGCA------------------------------------------------------------------------------------------------GCCATCT-GCTACCAATAGGGTTTCCTAAAGCATTGCTGCAATGGTGA-GGCCTCTCCACCCAAAGGCCTGTAGGGCATCCTGTTCCACTGGAATGTATGCCAATGCCACAAGCCCTCCCCAGTCCATATTTCCAATC i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16443780 932 + 178775436 TTGAC-TTACTTATCATAGCTTATATTTACAAAGATGGGACTCAA----------TAAAGTTGGAAAATGTATGTTACGAAGCAAATGTGTATAAC--TGGACATAATCCATGAAATACTGAGTACGTCTTTAAATATATCAGATAAGATTATGTAATTAATACTGCaatcacattttataa-aataaagg-ttt-------tttaaaggaaagagcaAAAATATCTCTAAGAGTTATAACTGAG------------------------------ATTGTCTTTTTCATCCATCAATCTTCTAAAGTatatgtt-cag---aaaaaaa-------aatacatcgtGCACTAAATCTTAGCAAAGATAATGGATTTCTACAGAAGTACTT------T------AAGATCAGATATACAGATTATGAAAgtagtctattaaaaaaaacagaaatgccaaGTTAGACATTTTGGCTTTt-acaaataaatgtgaatt---------aCATAAGTTAAAAATCCAGATTCTGAGTCCCTCAGAGCATTTAGGGATTACTGACAG-------------------------------------TCTTCTTTTGAGTTCATATGTTCAATATTACACATCCAAAGGCTTAACTTGTAAAA-GGCATCTGGCCTGATTCACTTGAagaattctattttaattcaAAGGGTATATAATTAGAATACTAGTATT-CTAGCacttcaagatatttttaaagttgtttgaaAACTGCTATATTATCACAGAAGGTTCCTCACTGgcacagaaaatggaaaagttgCTCAATGTGTTCAGGATGCTCTTGAAGCTACCTTTT-TATTGCCTTCCTCTCTTCATTTCCAGGCCATCA--GTACCTCTTGAATTTACCATCACCGCTAGTTCCCTGCA------------------------------------------------------------------------------------------------GCCATCT-GCTACCAATAGGGTTTCCTAAAGCATTGCTGCAATGGTGA-AGCCTCTCCAACCAAAGGCCTGTAGGGCATCCTGTTCCACTGGAATGTATGCCAATGCCACAAGCCCTCCCCAGTCCATATTTCCAATC i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19927053 934 - 48547382 TTGAC-TTACTTATCATAGCTTATATTTACAAAGATGGGACTCAA----------TAAAGTTGGAAAATATATGTTACGAAGCAAATGTGTATAAC--TGGACATAACCCATGAAATACTGAGTACGTCTTTAAATATATCAGATAAGATTATGTAATTAATACTGCAATCACATTTTATAA-AATAAAGGTTTT-------TTTAAAGGAAAGAGCAAAAATATCTCTAAGAGTTATAACTGAG------------------------------ATTGTCTTTTTCATCCATCAATCTTCTAAAGTATATGTT-CAG--AAAAAAAA-------AATACATCGTGCACTAAATCTTAGCAAAGATAATGGATTTCTACAGAAGTACTT------T------AAGATCAGATATACAGATTATGAAAGTAGTCTATTAAAAAAAACAGAAATGCCAAGTTAGACATTTTGGCTTTT-ACAAATAAATGTGAATT---------ACATAAGTTAAAAATCCAGATTCTGAGTCCCTCAGACCATTTAGGGATTACTGACAC-------------------------------------TCTTCTTTTGAGTTCATATGTTCAATATTACACATCCAAAGGCTTAACTTGTAAAA-GGCATCTGGCCTGATTCACTTGAAGAATTCTATTTTAATTCAAAGGGTATATAATTAGAATACTAGTATT-CTAGCACTTCAAGATATTTTTAAAGTTGTTTGAAAACTGCTATATTATCACAGAAGGCTCCTCACTGGCACAGAAAATGGAAAAGTTGCTCAATGTGTTCAGGATGCTCTTGAAGCTACCTTTT-TATTGCCTTCCTCTCTTCATTTCCAGGCCATCA--GTACCTCTTGAATTTACCATCACCGCTAGTTCCCTGCA------------------------------------------------------------------------------------------------GCCATCT-GCCACCAATAGGGTTTCCTAAAGCATTGCTGCAATGGTGA-AGCCTCTCCACCCAAAGGCCTGTAGGGCATCCTGTTCCACTGGAATGTATGCCAATGCCACAAGCCCTCCCCAATCCATATTTCCAATC i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21286454 1055 - 190850796 TTGAC-TTACTTACCATAGCATGTATTTACAAAGATGGGACTCAATCAAGTTCAGTAAAGTTAGAAAATACATGTTATGAAGCAAATTAGTACAAC--TGGACAGAATCCGTGAAATACTGAGTATGTCTTTAAATACATCAGGTAAGATTATA----TAATACTGCAATCACATTTTATAA-AATGAAGA-TTT-------CTTAAAGGAAAGAGCAAAAATATCTCTAAGAGCTATAACTGAG----------------------TTTAATTAAATGTCTTTTTCATCCATCAATCTTCTAAAGTATATATTCCAA-AAAAAAAAAAAAATAGAAAACATGGTGCAA-ATATCTTAGCAAAGATAATGGATTTCTACAGAAGTACTTTAAAACT------AAGATTGGAGATATAGATTATGAATGTAGTCCATT-AAAAAAGCAGAAATGTCAAGTTAGACATTTTGGCTTTT-ACAAATAAATGTGAATT---------ACATAAGTTAAAAATCCAGATTCTGAGTCCCTCAGGCCATTTATGGATTACTGATGG-------------------------------------TCTTCTTTTGAGTTCATATTTTCATTATTACACATCCAAAGGCTTAACTTGTAAAA-GGCATCTGGCCTGATTCACTTTAAGAATTCTATTTTAATTCAAAGGGTATATAATTAGAATAGTAGTATT-CTAGCACTTCAAGATATTTTTAAAGTTGTTTGAAAACTGCTATATTATCACAGAAGGTTCCTCACTGGCACAGAAAATGGAAAAGTTGCTCAATGTGTTCAGCATGCTCTTGAAGCTATCTTTT-TATCGCCTTCCTCTCTTCATTTCCAGGCCATCA--GTACCTCTTGAACTTACCATCACCGTCAGAt-cctgcagttccaagaatttgagactacaggctgagcgacgatgcccagctaattattttgtatttttagtagagatggggtttcaccatgttgaccaagctggtcATCT-GCTGCCAACAGGGTTTCCTAAAGCATTGCTGCAATGGTGG-ACCCCCTCCACCCAAAGGTCTGTAGGGCATCCTGTTCCACTGCAATGCATTCCAATGCCACGACCCCTCCCCAATCCATATTTCCAATC i calJac3.chr3 C 0 C 0 s mm10.chr5 49268350 891 + 151834684 TTGCCATCCCTGATCAGAGCTTGTATGTATAACAATGGGATTCTA----------TAAGGTTGGAAAGGATATGAC-TGAAAAAGAACTGGGCAAC-AGGGAAAGAATCTGTGAGGTGTGGACAATCTCTTGAAATATGGAGAGCAAGATTATGGAGTTACTATTATAATCATA-CCTAAAA-TTTAAAGA-TCTCCTTCTGCTTGAAGGAAAAAG----ATTATCTTTA------------GAG------------------------------A-----TCTTGCATGGAGAAGCCTTCAAGGAGTCATA---AAA-GTAAATAAA-------ATTACGTAGCCTAC-CCATCTTTATATAGATAATAAA-TACTAGAAAAATAATT------TTAAACAAATATTGAGGATATAGATAAGCAAAGTAGCTCACAGAACAAACTAGAAAGGCCAAGTTAAACATATTGGCTGGTAATAAATAAATGATGATT---------GACTAAACTAGAAATCTGGGTTGAAGATCCCTCAAGCCATGAAAGAACGACTGGTGG----------------------------------------TCTTTTAAGCTCATATTTTCAATATCGCACGCTCAAAGG----AATTGTAAAACAGCATCTGGCCCGAGTCACTT---GAGCTCTATTTTAATTCAAAGGGTATATAATTAGAATACTAGTAAC-CTAGCACTTCGTGATATTTTTAAAATTGTCTGAAAACTGCTAAATCACCACAGAAGCTTTTGCCTTGGCACAGAAAATGAAGAAATTGCTCAGTGCGTTCAGGATGTGATAGCTTCTATCGCTTGTATTTCTCTCCTA---TCATTTCCAGGTCAGCT--ATGCCTCTTGGCTTTGCCATTGCTG-----TGTCTGCA------------------------------------------------------------------------------------------------GCCAACC------------GGTTCCTTGAAGTAGAGCTGCTGTAGTAG-AACACCTCTTCTCAAAGGCCTACAGGGCTTCTTATTTCTCTGGAATATA-GTCAAC-CCACCACATTTAC---ACTCATGTTTCCAGTC i mm10.chr5 C 0 I 1265 s canFam3.chr3 3861022 994 - 91889043 TCAGCATTACTTACCATCACCTGCACTTGGAAAGATGGGACACAA----------TAAAGTCGGAAAATATATGTTACAAATCAAACTTGGATGACTTTGGACATAATACATGAAACACTGAGCATTGCTTTAACTGTATCAGCTATGCTTATGTAATTAATATTGCAATCACCTTCTATAATGATAAGGG-GTTAT-----TTTTAAGGTGGAAGAAAAGTTCTATGTGAAAAATATGATTGAGATGATTTAAGGAACACATAAAATTGAATTAAGTGTCTTTT-CACCCATCAATCTTCCAAA-TATATATT---G-------GAA-------AGAACATGACTCAG-GTATCTTAGCAAAGATAATGGATATCTATAGACGTACTTTAAAACT------AAGGTTGAAGATCCAGATTATAAAAGTAGCTCATACAAGAAAATAGAAGCACAAAGTTAAAGATTTTTACTTTTAACCAATACATGCTAATT---------AAATCAGTTGGAAATCCAGATTGGGACTTCCTCAGACCACTTACTGATTACTGATAGttcttttttctttttttcttttttttttttCTGATGGTCTTCTTTTGAGTTCATATTTTCAATATTACACGTCCAAAGGCCTAAATTGTAAAA-GGCATCCGGCCTGATTCACTTGAAGAACCCTATTTTAACTCAAAGGGTATATAATTAGAATACTAGTATTCCTAGCACTTCAAGATATTTTTAAAGGTGTTGCAAAACTGCTGTATTATCACAGAAGGTTCCTCACTGGCACAGAAAATGGAAAAGCTGCCCAACGTGTT------------GAAGCTACCTTTT-TATTGTCCTCATCTTTCCATTTCCAGGCCACCAACATACCTCTCGATTTCACCTTTACAGTCAGCCCCTCCTA------------------------------------------------------------------------------------------------GTCATCTTAGAGCCGATTGGGCTTCTGAAAACACTGCTGCAGTGATGGTGGCACATCTGTTCGAAGGCTTGCAGGATACTCCGTTTAACTGCAATGCAT--TGAACCCCCAACCTCTCCCCAATCCATGTTCTGCATC i canFam3.chr3 C 0 C 0 a score=345070.000000 s hg38.chr4_KI270790v1_alt 163489 114 + 220246 ATTTCTTTCACTCTGCCATATCAGCAATGCTTTCTAACTCCCACTGCAGcctccactgctaccaccctagtcacagccaccactcttcccactgttggtattc------ttttgtttttt s panTro4.chr4 21551260 119 + 193495092 ATTTCTTTCACTCTGCCATATCAGCAATGCTTTCTAACTCCCGCTGCAGcctccactgctaccaccctagtcacagccaccactcttcccactgctggtattc-tttttttttttttttt i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21728328 113 + 198332218 ATTTCTTTCACTCTGCCATATCACCAATGCTTTCTAACTCCCGCTGCA-CCTCCACTGCTACCACCCTACTCACACCCACCACTCTTCCCACTGTTGGTAttc------ttttttttttt i ponAbe2.chr4 C 0 I 1116 s nomLeu3.chr20 20338188 119 - 85365473 ATTTCTTTCATTCTGCCATATCAGCAATGCTTTCTAACTCCCGCTGCAGcctccactgctaccaccctagtcacagccaccactcttcccactgtttgtattc-tttttttttttttttt i nomLeu3.chr20 C 0 I 5 s rheMac3.chr5 16804680 118 + 184069350 ATTTCTCTCACTCTGCCatatcaataatgccttctaactcccactgcagcctccactgctaccgccctggtcacagccaccactctt-ccactgtttctattc-tttttttttttttttt i rheMac3.chr5 C 0 I 11 s macFas5.chr5 20854540 119 + 189454096 ATTTCTCTCACTCTGCCATATCAACAATGCCTTCTAACTCCCACTGCAGCCTCCACTGCTACCGCCCTGGTCacagccaccactctt-ccactgtttctattcttttttttttttttttt i macFas5.chr5 C 0 I 11 s papAnu2.chr5 16444712 118 + 178775436 ATTTCTCTCACTCTGCCATATCAACAATGCCTTCTaactcccactgcagcctccactgctacCGCCCTGGTCACAGCCACCACCCTT-CCactgtttctattc-tttttttttttttttt i papAnu2.chr5 C 0 I 11 s chlSab2.chr27 19927987 115 - 48547382 ATTTCTCTCACTCTGCCATATCAACAATGCCTTCTAACTCCCACTGCAGCCTCCACTGCTACCGCCCTGGTCACAGCCACCACTCTT-CCACTGttttta----tttttttttttttttt i chlSab2.chr27 C 0 I 11 s calJac3.chr3 21287509 118 - 190850796 ATTTGTCTCACTCTGCCATATCAGCAATGCTCtccaactactgttgcagcctctactgctaccaccctggtcacagccaccaCTCTTCCCACTGtttctattc-tttttttcttttttc- i calJac3.chr3 C 0 C 0 s canFam3.chr3 3862016 102 - 91889043 ATGTCTCCCAA---ACCAAACTAGCAGTGCTGTCCACCCCCCACTATGGCCTCCACTGCTACAATCCTGACAGGAACCaccgctctccccactcttttcatcc-tt-------------- i canFam3.chr3 C 0 C 0 e mm10.chr5 49269241 1265 + 151834684 I a score=4188.000000 s hg38.chr4_KI270790v1_alt 163603 2 + 220246 ga s panTro4.chr4 21551379 2 + 193495092 ga i panTro4.chr4 C 0 C 0 s nomLeu3.chr20 20338312 2 - 85365473 aa i nomLeu3.chr20 I 5 C 0 s rheMac3.chr5 16804809 2 + 184069350 ga i rheMac3.chr5 I 11 C 0 s macFas5.chr5 20854670 2 + 189454096 gc i macFas5.chr5 I 11 C 0 s papAnu2.chr5 16444841 2 + 178775436 ga i papAnu2.chr5 I 11 C 0 s chlSab2.chr27 19928113 2 - 48547382 ga i chlSab2.chr27 I 11 C 0 s calJac3.chr3 21287627 2 - 190850796 ga i calJac3.chr3 C 0 C 0 s canFam3.chr3 3862118 2 - 91889043 ga i canFam3.chr3 C 0 I 50 e mm10.chr5 49269241 1265 + 151834684 I e ponAbe2.chr4 21728441 1116 + 198332218 I a score=686435.000000 s hg38.chr4_KI270790v1_alt 163605 307 + 220246 gatggagtctcactctgtcacccaggctggagtgcagcggcacgatgttggctcactgcaacctcctcctcctgagttcaagtgattcttgtgtctcagcttcccaag-----------aagctgggactacagccatgagtcaccacacctggctaattattttgtatttttagtagagacggggtttcgccatgttgaccagcctggtcttgaactcctgacctcaggtgatctgcctgcctcggcgtcccaaagtgctgggactacaggcgtgagccactgcgcctggccccactgtttctattcttgaccctcc s panTro4.chr4 21551381 307 + 193495092 gatggagtctcactctatcacccaggctggagtgcagcggcacaatgtcggctcactgcaacctcctcctcctgagttcaagtgattcttgtgtctcagcttcccaag-----------aagctgggactacagccatgagtcaccacacctggctaattattttgtatttttagtagagacggggtttcaccatgttgaccagcctggtcttgaactcctgacctcaggtgatctgcctgcctcggcctcccaaagtgctgggactataggcgtgagccactgtgcctggccccactgtttctattcttgaccctcc i panTro4.chr4 C 0 C 0 s nomLeu3.chr20 20338314 307 - 85365473 gatggagtctcactctgtcacccaggctggagtgcagtggcacgatgtcggctcactgcaacctcctcctcctgagttcaagtgattcttgtatctcagcttcccaag-----------aagctgggactacagccatgagtcaccaggcccagctaattattttgtatttttaatagagacgcagtttcaccatgttgaccagcctggtcttgaactcctgacctcaggtgacctgcctgcctcggcctcctaaagtgctgggactacaggcgtgagccactgcgcctggccccactgtttctattcttgaccctcc i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16804811 318 + 184069350 gatggagtctcactctgtcacccaggctagagtgcagtggcacgatgtcagcttactgcaacctcctcctcctgagttcaagcgattcttgtgtctcagcttccgaagaagctgagattaagctgggactacagccaggagccaccatgcctggctaattattttgtatttttattagagatggggtttcactatgttgaccagcctggtcttgaactcctgacctcaggtgatctgcctgccatggcctcccaaagtgctggaagtacaggtgtgagccaatgtgcctggccccactgtttttattcttgaccctcc i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20854672 318 + 189454096 gatggagtctcactctgtcacccaggctagagtgcagtggcacgatgtcagcttactgcaacctcctcctcctgagttcaagcgattcttgtgtctcagcttccgaagaagctgagattaagctgggactacagccaggagccaccatgcctggctaattattttgtatttttattagagatggggtttcactatgttgaccagcctggtcttgaactcctgacctcaggtgatctgcctgccatggcctcccaaagtgctggaagtacaggtgtgagccaatgtgcctggccccactgtttttattcttgaccctcc i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16444843 318 + 178775436 gatggagtctcactctgtcacccaggctagagtgcagtggcacgatgtcagctcactgcaacctcctcctcctgagttcaagcgattcttgtgtctcagcttcCGAAGAAGCTGAGattaagctgggactacagccaggagccaccatgcctggctaattattttgtatttttattagagatggggtttcactatgttgaccagcctggtcttgaactcctgacctcaggtgatctgcctgccatggcctcccaaagtgctggaattacaggtgtgagccaatgtgcctggccccACTGTTTTTATTCTTGACCCTCC i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19928115 276 - 48547382 gatggagtctcactctgtcacccaggctagagtgcagtggcacgatgtcagttcactgcaaccccctcctcctgagttcaagcgattcttgtgtctcagctt------------------------------------------ctatgcctggctaattattttgtatttttattagagatggggtttcactatgctgaccagcctggtcttgaactcctgacctcaggtgatctgcctgccatggcctcccaaagtgctggaattacaggtgtgagccaatgtgcctggccCCACTGTTTTTATTCTTGACCCTCC i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21287629 305 - 190850796 gatggagtctcactctgtcacccaggctggagtgcagtggtgcaatgtcggctcactgtaacctctgcctccag-gttcaag-gattctcgtgtctcagcctcccaag-----------aatttgggactacaggcagcagtgactatgccaagccaattattttgtatttttagtagagatgaggtttcaccatgttgaccaacctggtcttgaactcctgaccttaggtgatctgcctgcctcagcctcccaaagtgctgggattacaggcattagccactgtgcctggtcCCACTGTTTCTATTCTTGACCCTCA i calJac3.chr3 C 0 C 0 e mm10.chr5 49269241 1265 + 151834684 I e canFam3.chr3 3862120 50 - 91889043 I e ponAbe2.chr4 21728441 1116 + 198332218 I a score=560050.000000 s hg38.chr4_KI270790v1_alt 163912 269 + 220246 atagtatgggccagagaacttactctgtgaagggtcagatggtaagtattgcaggctttgtgggccagacagtttctgttacaactactcaacactaccattataatgcaaaagaagccataggcaatatatacatgaatgagcatggccatgtttcatgcaaactttatcattagacattacatttcagttttatataatttccaagtgtcataaaatcttcttttgattttttttttttttttttggtttccatcatttaacaatgc s panTro4.chr4 21551688 267 + 193495092 atagtatgggccagagaacttactctgtgaagagtcagatggtaagtattgcaggctttgtgggccaaacagtttctgttacaagtactcaacactaccattataatgcaaaaggagccataggcaatatatacatgaatgagcatggccatgtttcatgcaaactttatctttagacattatatttcagttttatataatttccaagtgtcacaaaatcttcttttga--ttttttttttttttttggtttccatcatttaacaatgc i panTro4.chr4 C 0 C 0 s nomLeu3.chr20 20338621 266 - 85365473 atagtatgggccagagaacttactctgtgaagagtcagatggtaagtattgcaggctttgtgagccaaacagtttctgttacaactactcaacactaccattataatgcaaaaggagccataggcaatatctacatgaataagcatggccatgtttcatgagaactttatcactggacattacatttcagttttatataatttccaaatgtcataaaatcttcttttg---ttttttttttttttttggtttccatcatttaacaatgc i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16805129 251 + 184069350 agagtatggaccagagaacttactctgtgaagggtcagatagtaagtattgcaggctctgtgggc----cagtttctgttacaactactcaactgtaccattataatgcaaaagcagccataggcaatatataaataaatgagcatggccatgtttcatgcaaactttatc-----tctttacgtttcaattttatataatttccaagtgtcataaaa---tcttttga--tgtttttatgttt----gtttccaacatttaacaatgt i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20854990 254 + 189454096 agagtatggaccagagaacttactctgtgaagggtcagatagtaagtattgcaggctctgtgggc----cagtttctgttacaactactcaactgtaccattataatgcaaaagcagccataggcaatatataaataaatgagcatggccatgtttcatgcaaactttatc-----tctttacgtttcaattttatataatttccaagtgtcataaaatcttcttttga--tgtttttatgttt----gtttccaacatttaacaatgt i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16445161 259 + 178775436 AGAGTGTGGACCAGATAACTTACTCTGCGAAGGGTCAGATAGTAAGTATTGCAGGCTCTGTGGGC----CAGTTTCTGTTACAACTACTCAACTGTACCATTAtaatgcaaaagcagccataggcaatatataaataaatgagcatgGCCATGTTTCATGCAAACTTTATCATTAGACtttacatttcaattttatataatttccaaGTGTCATAaaatcttcttttga--tttttttatgttt----gtttccaACATTTAACAATGT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19928391 259 - 48547382 ATAGTATggaccagagaacttactctgtgaagggtcagatagtaagtatcgcaggctctgtgggc----cagtttctgttacaactactcaactgtaccactataatgcaaaagcagccataggcaatatataaataaatgagtatggccatgtttcatgcaaactttatcattagactttacatttcaattttatataatttccaagtgtcataaaatcttcttttga--tttttttatgttt----gtttccaacatttaacaatgt i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21287934 242 - 190850796 ATACTATgggccagataacttactctgtgaagagtcagatggtaagtattgcatgttttgtgggccaaacagtttctgctacaactactcaattctaccattataattcaaaagcagccataggcaatatataactgaatgagcatggtgatgtttcaagcaaacttta------gacgtaaca-ttcaattctatataatttccaagtgtcaaa----------------attttttttgttt----gtttccatcatttaacaatgt i calJac3.chr3 C 0 I 10 s canFam3.chr3 3862170 208 - 91889043 ---------------------------------------------atagtgtaggctttgcagaccaagcaggtggacttaccatcactcaactttgccattataacacaaaagcaaccatagttagcatgtaaatgacagagttaga----gtcttactacgactatttc--tgggagctaaatttgaatttcatctaattatcctctgtcatgaaatagtcttc-----ttttttgatgttt-----tatcaattactcaccaatgc i canFam3.chr3 I 50 C 0 e mm10.chr5 49269241 1265 + 151834684 I e ponAbe2.chr4 21728441 1116 + 198332218 I a score=17503.000000 s hg38.chr4_KI270790v1_alt 164181 8 + 220246 agaggcaa s panTro4.chr4 21551955 8 + 193495092 agaggcaa i panTro4.chr4 C 0 C 0 s nomLeu3.chr20 20338887 8 - 85365473 agaggcaa i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16805380 8 + 184069350 agaagcaa i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20855244 8 + 189454096 agaagcaa i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16445420 8 + 178775436 AGAAGCAA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19928650 8 - 48547382 agaagcaa i chlSab2.chr27 C 0 C 0 s canFam3.chr3 3862378 8 - 91889043 agaaataa i canFam3.chr3 C 0 C 0 e mm10.chr5 49269241 1265 + 151834684 I e calJac3.chr3 21288176 10 - 190850796 I e ponAbe2.chr4 21728441 1116 + 198332218 I a score=82978.000000 s hg38.chr4_KI270790v1_alt 164189 29 + 220246 ttcttagttaatggaccatgcaaaaaaac s panTro4.chr4 21551963 29 + 193495092 ttcttagttaatggaccatgcaaaaaaac i panTro4.chr4 C 0 C 0 s nomLeu3.chr20 20338895 29 - 85365473 ttcttagttaatggaccatgcaaaaaaac i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16805388 29 + 184069350 ttcttagttaatggaccatgcaaaacaac i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20855252 29 + 189454096 ttcttagttaatggaccatgcaaaacaac i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16445428 29 + 178775436 TTCTTAGTTAATGGACCATGCAAAACAAC i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19928658 29 - 48547382 ttcttagttaatggaccatgcaaaacaac i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21288186 29 - 190850796 TTCTTAGTTAATGGACCATGCAGGAAAAC i calJac3.chr3 I 10 I 313 s canFam3.chr3 3862386 27 - 91889043 ttcttagttaatggaccacacaaaaat-- i canFam3.chr3 C 0 C 0 e mm10.chr5 49269241 1265 + 151834684 I e ponAbe2.chr4 21728441 1116 + 198332218 I a score=191205.000000 s hg38.chr4_KI270790v1_alt 164218 99 + 220246 agccaatagactggatatagcccacagccagtagtttgctgacctctgctcta-----------------------------caacttaattg----taactgctgtgtttagaatgctgcagtggttcccc s panTro4.chr4 21551992 99 + 193495092 cgccaatagactggatttagcccacagccagtagtttgctgacctctgctcta-----------------------------caacttaattg----taactgctgtgtttagaatgctgcagtggttcccc i panTro4.chr4 C 0 C 0 s nomLeu3.chr20 20338924 99 - 85365473 agccaatagactggatttagcccacagccagtagtttgctgacctctgctcta-----------------------------caacttaattg----taactgctctgtttagaatcctgcagtggttcccc i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16805417 99 + 184069350 agccaatagactggatttagcccatagcctacagtttgctgacctctgctcta-----------------------------caacttaattg----taactgctctgattagaatcctgcaatggttcctc i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20855281 99 + 189454096 agccaatagactggatttagcccatagcctacagtttgctgacctctgctcta-----------------------------caacttaattg----taactgctctgattagaatcctgcaatggttcctc i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16445457 98 + 178775436 AGCCAATAGACTAGATTTAGCCCATAGCCTacagtttgctgacctctgctctA-----------------------------CAACTTAATTG----TAACTGCTCTGATTAGAAT-CTGCAGTGGTTCCCC i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19928687 98 - 48547382 agccaatagactggatttagcccatagcccacagtttgctgacctctgCTCTA-----------------------------CAACTTAATtg----taactgctctgattagaat-ctgcagtggttcccc i chlSab2.chr27 C 0 C 0 s canFam3.chr3 3862413 130 - 91889043 aggcaatgggctggacttggcccatgggctgtagtttactgactcctactctattgtacagctcaaaagagcagccagtgattagcatgattgaatttaact--ccggctcagagtcctgcagtggctgtca i canFam3.chr3 C 0 C 0 e mm10.chr5 49269241 1265 + 151834684 I e calJac3.chr3 21288215 313 - 190850796 I e ponAbe2.chr4 21728441 1116 + 198332218 I a score=62724.000000 s hg38.chr4_KI270790v1_alt 164317 26 + 220246 attccactcacgacatgtgcttaggt s panTro4.chr4 21552091 26 + 193495092 attccactcacgacatgtgcttaggt i panTro4.chr4 C 0 C 0 s nomLeu3.chr20 20339023 26 - 85365473 attccactcacaacatgtgcttaggt i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16805516 26 + 184069350 attctactcacaacatatgctcaggc i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20855380 26 + 189454096 attctactcacaacatatgctcaggc i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16445555 26 + 178775436 ATTCTACTCACAACATATGCTCAGGC i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19928785 26 - 48547382 attctactcacaacatacgctcaggc i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21288528 21 - 190850796 ATTCCACTCACAACATATGct----- i calJac3.chr3 I 313 C 0 s canFam3.chr3 3862543 26 - 91889043 gtgccattcacagcaaatgctcaggt i canFam3.chr3 C 0 C 0 e mm10.chr5 49269241 1265 + 151834684 I e ponAbe2.chr4 21728441 1116 + 198332218 I a score=616893.000000 s hg38.chr4_KI270790v1_alt 164343 184 + 220246 cctcaccatggcctaaaaggcctcatataatct-gtttccctttgcctttcttctgtcttctccatttactccc--tggttttcctctgtttcagcaaactgacatgctttctgcttcttgaacacatggaacaca-gcctgccttgtgacttctgcactggctggcctgtctgcctgaaatttgtgt s panTro4.chr4 21552117 185 + 193495092 cctcaccatggcctaaaaggcctcatataatctggtttccctttgcctttcttctgtcttctccatttactccc--tggttttcctctgtttcagcaaactgacatgctttctgcttcttgaacacatggaacaca-gcccgccttgtgactcctgcactggctggcctgtctgcctgaaatttgtgt i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21729557 185 + 198332218 CCTCACCATGGCCTAAAAGGCCTCATGtaatctggtttccctttgcctttcttctgtcttctccatttactccc--tggttttcctctgtttcagaaaactgacctgctttctgcttcttgaacacatccaacaca-gcctgccttgtgacttctgtactggctggtctgtctgcctgaaatttgtgt i ponAbe2.chr4 I 1116 C 0 s nomLeu3.chr20 20339049 183 - 85365473 cctcaccatggcctaaaaggcctcatataatctggtttccctttgcctttcttctgtcttctccatttactccc--tggttttc--ctgtttcagcaaactgacctgctttctgcttcttgaacacatgaaacaca-gcctgccttgtgacttctgcactggctggtctgtctgcctgaaatttgtgt i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16805542 185 + 184069350 cctcaccatggcctaaaaggcttcatataatctggtttccctttgcccttcttccttcttctccaattactcca--tggttttcctctgtttcagcaaactgacctgctttctgcttcttgaacacattgaacaca-gcctgccttgtgacttctgcactggctggtctgtctgcctgaaatttgttt i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20855406 185 + 189454096 cctcaccatggcctaaaaggcttcatataatctggtttccctttgcccttcttccttcttctccaattactcca--tggttttcctctgtttcagcaaactgacctgctttctgcttcttgaacacattgaacaca-gcctgccttgtgacttctgcactggctggtctgtctgcctgaaatttgtct i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16445581 185 + 178775436 CCTCACCATGGCCTAAAAGGCTTCATATAATCCGGTTTCCCTttgcccttcttccttcttctccaatTACTCCA--TGGTTTTCCTCTGTTTCAGCAAACTGACCTGCTTTCTGCTTCTTGAACACATTGAACACA-GCCTGCCTTGTGACTTCTGCACTGGCTGGTCTGTCTGCCTGAAATTTGTCT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19928811 185 - 48547382 cctcaccatggcctaaaatgcttcatataatccggtttccctttgcccttcttccttcttctccaattactcca--tggttttcctctgtttcagcaaactgacctgctttctgcttcttgaacacattgaacaca-gcctgccttgtgacttctgcactggctggtctgtctgcctgaaatttgtct i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21288549 171 - 190850796 --------------aaaaaggctcataaaatccagatttcctttgcctttcttccttcttctccagttagtccc--tggtttttgtctgtttcagcaaactgacctgctttctacttcttgaacacactgaacaca-gcctgccttgtgacttctgcactggctggtctctctgcctgaaatttgtgt i calJac3.chr3 C 0 C 0 s canFam3.chr3 3862569 185 - 91889043 tttcaccatggcctgtgaagccttatatattctgg-tcccctttgtttgtctgcctttatctctagttactctctttggttttcctctgctccagctaactggcctactttcagttctttgaagacgctgaacctaggcctgtcttagggtctttgcactggaaggtc--tctgcctggaatctgttt i canFam3.chr3 C 0 C 0 e mm10.chr5 49269241 1265 + 151834684 I a score=3297409.000000 s hg38.chr4_KI270790v1_alt 164527 976 + 220246 tcccagatatttctatgtttctcttgcttgcttcaagattttgaccaaatgccattctct--gatagtctatcttgactactctatttaaatttcaaccacactgttatggacggaattgtgcctcccca--tc-ccaaacttgtttgttgaagtcctaactcccagtacctcggaacgtgactgtacttagagataagatctttaaaggagtgattcagttaaaatgaggcctctaggatgggccctaatccaatctgaccaatttccttataagaagagaaaatttaggcacacagggagataccaggagcacacaagcacacagcatagatggcatgaagacatagtgacaaggtggccatctgcaagccaaggagaaaggactcag-aaaaaaatccaacctgctcataccctgactttggacttctag---------cctcaattgctgtgagaaaacaaatttctgttgtttaggctacgtagtctgtgatattttatagtgatggccccgttaaacaaatgc-acactctaac-ctccacagtcttcccaaaccgacttat---------cctattgtat---------atttacccaga---------gtatttatcatctactgacatgcattttaatt-------tactggcttagtat-gtgtatt------atctgactccccactacatga-ggctaagatcttttgt----ttatggatgtatccaaagtttgcagaagaggacctagcaaaggataggtacttaatgaatacctgttggataattgaatCCTAGCAATGCATTCATCTCT-TATATCCCCTGCCTTTGTTTCTTGGCTCTTCCTG--AGGTCCAATCCCCAAC----------TCCACACC--------CATGGCCAGTGAAACCCACCTCAAATATTAACAATGCTAAGAATGTATCTCTTGCCACCAACACTCTGTGCTCTTTCTCTTTGGAGTCTAGTAATACACTATCTGTTTTTCTCTTGTGGTGCTTAATACATTCAAGCCTGTATTGAATTTTCTATA s panTro4.chr4 21552302 978 + 193495092 tcccagatatttctatgtttctcttgcttgcttcaagattttgaccaaatgccattctct--gatagtctatcttgactactctatttaaattgcaaccacactgttatggacggaattgtgcctcccca--tc-ccaaacttgtttgttgaagtcctaactcccagtacctcggaacgtgactgtacttggagataagatctttaaaggagtgattcagttaaaatgaggcctggaggatgggccctaatccaatctgaccaatttccttataagaagagaaaatttagacacacagggagataccaggagcacacaagcacacagcatagatggcatgaagacatagtgacaaggaggccatctgcaagccaaggagaaaggactcgg-aaaaaaatccaacctgctcataccctgactttggacttctag---------cctcaattgctgtgagaaaacaaatttctgttgtttaggctacgtagtctgtgatattttatagtgatggccccgttaaacaaatgc-acactctaac-ctccacagtcttcccaaaccaacttat---------cctattgtat---------atttacccaga---------gtatttatcacctactgacatgcattttaatt-------tactggcttagtat-gtgtatt------atctgactccccactacatga-ggctaagatcttttgt----ttatggatgtatccaaagtttgcagaagaggacctagcaaaggataggtacttaatgaatacctgctggataatcgaatCCTAGCAATGCATTCATCTCT-TATATCCCCTGCCTTTGTTTCTTGGCTCTTCCTGAAAGGTCCAATCCCCAAC----------TCCACACC--------TATGGCCAGTGAAACCCACCTCAAATATTAACAATGCTAAGAATGTATCTCTTGCCACCAACACTCTGTGCTCTTTCTCTTTGGAGTCTAGTAATACACTATCTGTTTTTCTCTTGTGGTGCTTAATACATTCAAGCCTGTATTGAATTTTCTATA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21729742 978 + 198332218 tcccagatatttctatgtttctcttgcttgcttcaagattttgaccaaatgccattctct--gatagtctatcttgaccactctatttaaattgtaaccacactgttgtggactgaattgcgccttccca--tc-ccaaatttgtttgttgaagtcctaacccccagtacctcagaacgtgactgtacttggagataagatctttaaaggagtgattcagttaaaatgaggcctctagggtgggccctaatccaatctgaccaatttccttataagaagagaaaatttagacccacagggagaaaccaggagcacacatgcacacagcatagatggtatgaagacacagtgacaaggtggccatctgcaagccaaggagaaagccctcag-aaaaaaatccaacctgctcataccctgactttggacttctag---------cctcaattgctgtgagaaaacaaatttctgttgtttaggctacgtagtctgtgatattttatagtgacggccctgttaaacaaatgc-acactctaac-ctccacagtcttcccaaaccgatttat---------cctattgtat---------atttacccaga---------gtatttatcaccaactgacatgcattttaatt-------tactggcttagtat-gtgtatt------atctgactccccaccacatga-ggctaagatcttttgt----ttatggatgtatccaaagtttgcagaagaggacctagcaaaggataggtacttaatgaatacctgctggataaatgaatCCTAGCAATGCATTCATCTCT-TATATCCCCTGCCTTTGTTTCTTGGCTCTTCCTGAAAGGTCCACTCCCCAAC----------TCCACACC--------CATGGCCAGTGAAACCCACCTCAAATATTAACAATGCTAAGAATGCATCTCTTGCCACCAACACTCTGTGCTCTTTCTCTTTGGAGTCTAGTAATACACTATCTGTATTTCTCTTGTGGCGCTTAATACATTCAAGCCTGTATTGAATTTTCTATA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20339232 971 - 85365473 tcccagatatttctatgtttctcttgcttgcttcaagattttgaccaaatgccattccct--gatagtctatcttgaccactctatttaaattgtaaccacactgttacggactgaattgtgcctcccca--tc-ccaaacttgtttgttgaagtcctaacccccagtacctcagaacgtgactgtacttggagataagatctctaaagg--------agttaaaatgaggcctctacggtgggccctaatccaatctgaccaatttccttctaagaagagaaaatttggacacacagggagataccaggagcacacatgcacacggcatagatggcatgaagacactgtgacaaggtggccatctgcaagccaaggagaaaggcctcagaaaaaaaatccaacctgctcatatgctgactttggacttctag---------tctcaattgctgtgagaaaacaaatttctgttattaaggctatgtagtctgtgatattttatagtgacggccctgttaaacaaatgc-acactctaac-ctccacagacttcccaaaccgatttat---------cccattgtac---------atttacccaga---------gtatttatcacctactgacatgcattttaatt-------tactggcttagtat-gtgtatt------atctgactccccactacatga-ggctaagatcttttgt----ttatggatgtatccaaagtttgcagaagaggacctagcaaaggacaggtacttaatgaatacctgctggataaatgaatCCTAGCAATGCATTCATCTCT-TATATCCCCTGCCTTTGTTTCTTGGCTCTTCCTGAGAGGTCCAATCCCCAAC----------TCCACACA--------GATGGCCAGTGAAACCCACCTCAAACATGAACAATGCTAAGAATGTATCTCTTGCCACCAACACTCTGTGCTCTTTCTCTTTGGAGTCTAGTAATACACTATCTGTAGTTCTCTTGTGGCGCTTAATACATTCAAGCCTGTATTGAATTTTCTATA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16805727 978 + 184069350 tcccgaatatttctatgtttctcttgcttgcttcaagattttgaccaaatgccattctct--gacagtctaccttgaccactctatttaaaTTATAACCACACtgttatggacagaattgtacgtctcca--tc-ccaaacttgtttgttgaagtcccaaccctcactacctcagaatgtgaccgtatttggagataagatctttaaaggggtgattcagttaaaatgaggcctctcggttgggtcctaatccagtctgaccaatttccttataagaagagaaaatccaaacacacagggagataccaggagcacacatgcacacagcaaagatggcatgaagacacagtgacaaggtggccatttgcaagccaaggagagaggccttggaaaaaaaatccaacttgctcataccctgactttggacttctag---------cctcaatttttgtgagaaaacaactttctgttgtttagacaacgtagtctgtgatattttatagtgacggccctgttaaacAAAAgc-acactctaac-ctccacagtcttcccaaaccgacttat---------cctgttgtat---------acttacctata---------gtatttatcacctactgacatgcaatttaatt-------tactggcttagtac-gtgtatt------atccaactccccactacatga-ggctaagatgttttgt----ttatggatgtatccaaagttcgcagaagaggacctagcaaagggtaggcatttaaggaatacctgctggataaatgaaCCCTAGCAATGCATTCATCTCT-TATAACCCTTGCCTTTGTTTCTTGGCTCTTCCTGAGAATACCAATCCCCAAC----------TCCACACC---------ATGGCCAGTGAAACCCAGTTCAAATATGAACAATGCTAAGAATATATCTCTTGCCACCAACACTCTGTGCTCTTTCTCTTTGGAGTCTAGTAATACACCATCTGTATTTCTCTTGTGGTGCTTAATACATTCAAGCCTGTATTCAATTTTCTATA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20855591 978 + 189454096 tcccgaatatttctatgtttctcttgcttgcttcaagattttgaccaaatgccattctct--gacagtctaccttgaccactctatttaaaTTATAACCACACtgttatggacagaattgtacgtctcca--tc-ccaaacttgtttgttgaagtcctaacccccactacctcagaatgtgaccgtatttggagataagatctttaaaggggtgattcagttaaaatgaggcctctcggttgggtcctaatccagtctgaccaatttccttataagaagagaaaatccaaacacacagggagataccaggagcacacatgcacacagcaaagatggcatgaagacacagtgacaaggtggccatttgcaagccaaggagagaggccttggaaaaaaaatccaacttgctcataccctgactttggacttctag---------cctcaatttttgtgagaaaacaactttctgttgtttagacaacgtagtctgtgatattttatagtgacggccctgttaaacAAAAgc-acactctaac-ctccacagtcttcccaaaccgacttat---------cctgttgtat---------acttacctata---------gtatttatcacctactgacatgcaatttaatt-------tactggcttagtat-gtgtatt------atccaactccccactacatga-ggctaagatgttttgt----ttatggatgtatccaaagttcgcagaagaggacctagcaaagggtaggcatttaaggaatacctgctggataaatgaaCCCTAGCAATGCATTCATCTCT-TATAACCCTTGCCTTTGTTTCTTGGCTCTTCCTGAGAATACCAATCCCCAAC----------TCCACACC---------ATGGCCAGTGAAACCCAGTTCAAATATGAACAATGCTAAGAATATATCTCTTGCCACCAACACTCTGTGCTCTTTCTCTTTGGAGTCTAGTGATACACCATCTGTATTTCTCTTGTGGTGCTTAATACATTCAAGCCTGTATTGAATTTTCTATA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16445766 972 + 178775436 TCCCGaatatttctctgtttctcttgctTGCTTCAAGATTTTGACCAAATGCCATTCTCT--GACAGTCTATATTGACCACTCTATTTAAATTATAACTACACTGTTACGGACAGAATTGTACGTCTCCA--TC-CCAAACTTgtttgttgaagtcctaacccccactacctcagaatgtgaccgtATTTGGAGATAAGATCTTTAAAGGGGTGATTCAGTTAAAATGAGGCCTCTCAGTTGGGTCCTAATCCAGTCTGACCAatttccttataagaagagaaaatccaAACACACAGGGAGatac------cacacatgcacacagcaaAGATGGCATGAAGACACAGTGACAAGGTGGCCatttgcaagccaaggagagaggccttggaaaaaaaatccaacttgCTCATACCCTgactttggacttctag---------cctcaaATGTTGTGAGAAAAcaactttctgttgtttagaCAACGTAGTCTGTGATATTTTATAGTGACGGCCCTGTTAAACAAAAGC-ACACTCTAAC-CTCCACAGTCTTCCCAAACCGACTTAT---------CCTGTTGTAT---------ACTTACCTATA---------GTATTTATCACCTACTGACATGCAATTTAATT-------TACTGGCTTAGTAT-GTGTATT------ATCTGACTCCCCACTACATGA-GGCTAAGATGTTTTGT----TTATGGATGTATCCAAAGTTCGCAGAAGAGGACCTAGCAAAGGGTAGGCATTTAAGGAATACCTGCTGGATAAATGAACCCTAGCAATGCATTCATCTCT-TATAACCCTTGCCTTTGTTTCTTGGCTCTTCCTGAGAGTACCAATCCCCAAC----------TCCACACC---------ATGGCCAGTGAAACCCAGTTCAAATATGAACAATGCTAAGAATGTATCTCTTGCCACCAACACTCTGTGCTCTTTCTCTTTGGAGTCTAGTAATACACTATCTGTATTTCTCTTGTGGTGCTTAATACATTCAAGCCTGTATTGaattttctata i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19928996 978 - 48547382 tcctgaatatttctatgtttctctttcttgcttcaagattttgaccaaatgccattctct--gacagtctatcttgaccactctatttaaattataaccacactgttatggacagaattgtacgtctcca--tc-ccaaacttgtttgttgaagtcctaacccccactacctcagaatgtgaccgtatttggagataagatctttaaaggggtgattcagttaaaatgaggcctctcggttgggtcctaatccagtctgaccaatttccttataagaagagaaaatccaaacacacagggagataccaggagcacacatgcacacagcaaagatggcatgaagacacagtgacaaggtggccatttgcaagccagggagagaggcctcggaaaaaaaatccaacttgctcataccctgactttggacttctag---------cctcaattgttgggagaaaacaactttctgttgtttagacaacgtagtctgtgatattttatagtgacggccctgttaaacaaaaac-acactctaac-ctccacagtcttcccaaaccgacttat---------cctgttgtat---------acttacctata---------gtatttatcacctactgacatgcaatttaatt-------tactggcttagtat-gtgtatt------atctgactccccactacatga-ggctaagatgttttgt----ttatggatgtacccaaagttcgcagaagaggacctagcaaagggtaggcatttaaggaatacctgctggataaatgaaCCCTAGCAATGCATTCATCTCT-TATAACCCTTGCCTTTGTTTCTTGGCTCTTCCTGAGAGTACCAATCCCCAAC----------TCCACACC---------ATGGCCAGTGAAACCCAGTTCAAATATGAATAATGCTAAGAATGTATCTCTTGCCACCAACACTCTGTGCTCTTTCTCTTTGGAGTCTAGTAATACACTATCTGTATTTCTCTTGTGGTGCTTAATACATTCAAGCCTGTATTGAATTTTCTATA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21288720 986 - 190850796 tcccaggtatttctatggttctcttgcctgctttaagattttgaccaaatgctattctct--gatagtatatcttgaacactctatttaagttgtaaccacactgttatagactgaattgtgcctctcca--ttatcaaatttgttggttgaaatcctaactcccactacctcagaatgtgatcgtatcttgagataatatctgtaaaggggtgattctgttaaaatgaggacttcagggtggaccctaatcctatctgaccaacttccttataagaagggaaaatttagacacacagggagataccaggagcacacaggcatacagtaaagatggcatgaagatacggcgacaaggtggccatttgcaagccaaggag--aggccttgg--aaaaaatccatcctgctcataccttggctttgtatttctag---------cctcaactgctgtgagaaaaataatttctgttgctcaggtttcctagtctatgatatttcatagtgacggctctgttaaacaaatgc-gcactctaac-ctccatagtcttcccaaacccacttat---------cctgttgaat---------atttacccaga---------gtatttatcacctactgacaagcaattttatt-------tactagcttggttc-gtgtatt------ctctgacttcccactacatga-ggctaagatcttttgt----ttatagacgtagccaaagttcgcagaagagggccttgcaaatggtaggcacttaataaatacctgctagataaatgaatTCTAGCAATGCATTCATCTCT-AATATCCCCTGCCTTTGTTTATTTGCTCTTCCTGGGCGGTCCAATGGCCAGAGGTCCAATGGTCCATACC--------CATGGCCAGTGaaacccagctcaaatattaatgatgctaagaatgtatctcttgccaccaatactcagtgctctttctccttggagtctagtaatgcactatgtatacttctcttgtggtgcttaacacattcaagcctgtattgaattttctata i calJac3.chr3 C 0 C 0 s mm10.chr5 49270506 960 + 151834684 TCTCCTATATTGCCATGGCTTTTAGGCATGCTTCAAGA--CTGATCAAATTCCATT---T--CACACTCTTTCCTACTCA--CTGTTTAAAATGAAACTATTTtgctgtgaactgacttggacctaccta---c-acaattctacaagctaaagtgctagtgatcagggctccacaaacctatagtatt--gaaatgaggccttcaagaaatcgatgctgataaaacaggggctttgggtggatctctga--aaacctggctggtgtccttataaggag---acattgagacacataaacagaagaaaagggcacacatgcagagagtaaagtctatgtgaggacacaacaagaaactagttacttacaaatcagggagtcatatc----aagagaaatcaaagctgct-agacatta--ttagaacattcag---------cttctaaaacatagaggatataaatatctgttacttaagccacctgggtcacagtatgttattataacagtcat----agcagatactacaGACCATCTCTCTTCAGCTTTCTCCAAACCATTTATGAATGTCTCCCTTCTCCATGAAGGCCGAACatacgtatatatgatcatgtgtatat-atatatatatatatatTCCAAGCCCCTGAATACCACCTGAATAT-ATATATTCCAAGCACCTGAAT----ACCACCTGA-----------------------ATATATATATTCCAAGCAC-CTGAATACCACCTGACAAAGGCTA-GCACTCA---AATATATGCTCTATATGTGAAGCCTGGGAATGTATCACT---T-AACAGCATTTCACTCTGTCC-----TTCTTCCCATGAGGCCCAATTCCCAGC----------TTAACATCTCTATACTCAGAGCCAGTAAAACCTAACTCACATATTGCTGCCGCTAAGAATGACTCTCTTAACACCAGTATGAAGTA--GCTTCTCTCTGAGTTCTATT-----ACAATCGGTAACTCACCTGTGTCATTTAATGCATTGATTCTTGTATTATATTTTTTTAA i mm10.chr5 I 1265 C 0 s canFam3.chr3 3862754 978 - 91889043 ccccatatatttctatggctcccttgcttgcttcaagattttgacctgatgtcattctcttcaagagtctatcctaaccactcaatttatattgtaactatcctgttatgggctca-ttgtgtccccctaaatt-tcaaa------tactgaagccctaacctctagttgctcagaatgtaactgtatttgtagataaagtctttaaagaggtgattcattt-aaataaggccattagagtgggccctaatccaatctgactggtatccttataagaagagggaatt-ggacatgtagggagttaccagagatgtggcatcccagaggaatggccacgtgaggacatggtgagaagggggccacccgcaagccaaagagaaaggcctcag--aagaaatcaaatgtgctaacaccttgatcttggatgctgagaaagtgaatactctctagaaccaagaaaataaat---tgctgtttgagccaccaaatctgtagtattttgttacagcagccatagcaaacgaatac-acatcccaac-ccccaca-ccttcgcaaacccatttaa---------cttgttccat---------ttttacccaga---------gttcctatcagccactaaaatac----------------tatcagataaatctagtttatc------atctaccacccctctacatgacagcaatggacctttgtcaactgacatatttattccaagatctcagaagagtacctataagagactaagcac-agagacatacctgctggttggatgaaCCCTGGTAATATATTTACCCCCATCTATCCCCTTCCTCTGCTTCTTTGCTCTTCCTGGAAAGCCCAATGATCAAC----------TCAGCATCTCCAGACCTGTAGCCACTaaaacccatgtcatatgttgtcaccactaaaag---atctcttgacacaaa-atagagggaaccctttctttggattctaccgatacactgtctgaacctctctcctggcacttaacgtattcaagtctgtattaaagttgttata i canFam3.chr3 C 0 C 0 a score=12285.000000 s hg38.chr4_KI270790v1_alt 165503 3 + 220246 TAT s panTro4.chr4 21553280 3 + 193495092 TAT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21730720 3 + 198332218 TAT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20340203 3 - 85365473 TAT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16806705 3 + 184069350 TAT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20856569 3 + 189454096 TAT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16446738 3 + 178775436 tat i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19929974 3 - 48547382 TAT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21289706 3 - 190850796 taT i calJac3.chr3 C 0 C 0 s canFam3.chr3 3863732 3 - 91889043 tat i canFam3.chr3 C 0 I 394 e mm10.chr5 49271466 0 + 151834684 C a score=2157089.000000 s hg38.chr4_KI270790v1_alt 165506 729 + 220246 ACgcatatctcagagatattgcaggttccattatagaacacagcaataaagtgaatatcacattaaagtgagtcatacaaatttcttggcttcccagtgcacgtaaaagttttgtttacactgtact------------gtagtctatgaagtgtgttattgcattatgtct-aaaaaatggacataccttaaattaaaa-tactctattgct--aaaaaatgctaactatcatctgagccttcagtgagaagtaattttttgctcatggagggtcttgcctctatgctgacaaatgctgactgatcaggacggtggctgctgaagtttgaggtgtctagtgtaattcttaaataagacaacaatgaagtttgtcatattgattgac----tctttcatcaaggacttaactgaagcatctgatgctgtttg-ataacattttacccacaagataacttttttcaaaattaaagtcaatcctctcaaacactactgctgtttattgactaagtttatgtaacagtctaaattctttgttgtcattccagcattgttcacagcatcttcatgaggagtagactcc-tttcaagaaaccactttctttactcacccataagaagcaactcttcatccatttaagtttgttctttagatggcagcaattcagtcacatctccatgatccatttctaatcctcgttttcttgctatttccatcacatctccagcaacttcctccactgaaggctt s panTro4.chr4 21553283 730 + 193495092 aagcatatctcagagatattgcaggttccattatagaacacagcaataaagtgaatatcacattaaagtgagtcatacaaatttcttggcttcccagtgcacgtaaaagttttgtttacactgtact------------gtagtctatgaagtgtgttattgcattatgtct-aaaaaatggacataccttaaattaaaa-tactctattgct--aaaaaatgctaactatcatctgagccttcagtgagaagtaattttttgctcatggagggtcttgcctctatgttgacaaatgctgactgatcaggatggtggctgctgaagtttgaggtgtctagtgtaattcttaaataagacaacaatgaaatttgtcatattgattgac----tctttcatcaaggatttaactgaagcatctgatgctgtttg-ataacattttacccacaagataacttttttcaaaattaaagtcaatcctctcaaacactactgctgtttattgactaagtttatgtaacagtctaaattctttgttgtcattccagcattgttcacagcatcttcatgaggagtagactccatctcaagaaaccactttctttactcacccataaaaagcaactcttcatcaatttaagtttgttctttagatggcagcaattcagtcacatctccatgatccacttctaatcctcattttcttgctatttccatcacatctccagcaactgcctccactgaagtctt i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21730723 728 + 198332218 ACAcatatctcagagatattgcaggttccattatagaacacagcaataaagtgaatatcacattaaagtgagtcgtacaaatttcttggcttcccagtgcacgtaaaagttttgtttacactgtact------------atagtttatgaagtgtgttattgcat--tgtct-aaaaaatggacataccttaaattaaaa-tactctattgct--aaaaaatg----ctatcaactgagccttcagtgagaggtaattttttgctcatggagagtcttgcctctatgttgacaaatgctgactgatcaggatggtggctgctgaaggttgaggtgtctagtgtaattcttaaataagacaacaatgaagtttgtcatattgattgactctttctttcatcaaggatttaactgaagcatctgatgctgtttg-atagcattttacccacaagataacttttttcaaaattaaagtcaatcctcacaaacactactgctgtttattgactaagtttatgtaacagtctaaattctttgttgtcattccagcattgttcgcagcatcttcatgaggagtagactccatctcaagaaactactttctttactcacccataagaagcaactcttcatccatttaagtttgttccttagatggcagcagttcagtcacatctccatgatccatttctaatcctctttttcttgctatttccatcacatctgcagcaacttcctccattgaagtctt i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20340206 734 - 85365473 ATgcatatctcagagatattgcaggttccattatagaacacagcaataaagtgaatatcacattaaagtgagtcatacaaatttcttggcttcccagtgcacgtaaaagttttctttacactgtact------------gtagtctatgaagtgtgttattgcattatgtct-aaaaaatgtacataccttaaattaaaa-tactctattgct--aaaaaatgctaactatcatctgagccttcagtgagaagtaatttttcgctcatggagggtcttgcctctatgttgacaaatgctgactgatcaggatggtggctgctgaaggttgaggtgtctagtgtaattcttaaataagacaacaatgaagtttgtcatattgattgactctttctttcatcaaggatttaactgaagcatctgatgctgtttg-atagcattttacccacaagataacttttctcaaaattaaagtcaatcctctcaaacactactgctgtttattcactaagtttacgtaacagtctaaattctttgttgtcattccagcattgttcacagcatcttcatgaggagtagactccatctcaagaaaccactttctttactcacccataagaagcaactcttcatctatttaagtttgttctttagatggcagcaattcagtcacatctccatgatccatttctaatcctcgttttctcgctatttccatcacatctgcagcaacttcctccactgaagtctt i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16806708 745 + 184069350 ACAcatatctcagagatattgcaggttccattataaaatacagcaataaagtgaatatcacattaaagtgagtcatacaaatttcttggcttcccagtgcacataagagttttgtttacactgtactgtagtctatgaagtagtctatgaagtgtgctattgcattacatctaaaaaaatgtacatatcttaaattaaaagtactctattactaaaaaaaatgcgaaccatcatctgagccttcagtaagaagtaattttttgttcacggagggtcttgcctctacgttgacaaatattgactgatcaggatggtggctgctgaaggttgaggtgtctagtataattcttaaataagacaacaatgaagtttgccacattgattgactctttctttcatcaaggatttatctgaagcatatgatgctatttg-atagcatttcacccacaagatagctttttccaaaattagagtcattcctctcaagc---actgctgtttattgact--gtttatgtaacagtctaaattctttgctgtcattccagcattgttcacagcatcttcatgaggagtagactccatctcaagaaaccactttctttactcacccataagaagcaactcttcatccatttaagtttgttctttagatggcagcaattcagtcacatctccatgacccatttctaatcctcgttttcttgccatttccatcacatttgcagcaacttcctccactgaagtctt i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20856572 745 + 189454096 ACAcatatctcagagatattgcaggttccattataaaatacagcaataaagtgaatatcacattaaagtgagtcatacaaatttcttggcttcccagtgcacataagagttttgtttacactgtactgtagtctatgaagtagtctatgaagtgtgctattgcattacatctaaaaaaatgtacatatcttaaattaaaaatactctattactaaaaaaaatgcgaaccatcatctgagccttcagtaagaagtaattttttgttcacggagggtcttgcctctacgttgacaaatattgactgatcaggatggtggctgctgaaggttgaggtgtctagtataattcttaaataagacaacaatgaagtttgccacattgattgactctttctttcatcaaggatttatctgaagcatatgatgctatttg-atagcatttcacccacaagatagctttttccaaaattagagtcattcctctcaagc---actgctgtttattgact--gtttatgtaacagtctaaattctttgctgtcattccagcattgttcacagcatcttcatgaggagtagactccatctcaagaaaccactttctttactcacccataagaagcaactcttcatccatttaagtttgttctttagatggcagcaattcagtcacatctccatgacccatttctaatcctcgttttcttgccatttccatcacatttgcagcaacttcctccactgaagtctt i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16446741 735 + 178775436 acacatatctcagagatattgcaggttccattataaaatacagcaataaagtgaatatcacatTAAAGTGAGTCATACAAATTTCTTGGCTTCCCAGTGCACATAAAAGTTTTGTTTACACTGTACT------------GTAGTCTATGAAGTGTGCTATTGCATTACGTCT-AAAAAATGTACGtatcttaaattaaaaatactctattactaaaaaaaatgcgaaccatcatctgagccttcagtaaGAAGTAATTTTTTGTTCGCGGAGGGTCTTGCCTCTACGTTGACAAATATTGACTGATCAGGATGGTGGCTGCTGAAGGTTGAGGTGTCTAGTATAATTcttaaataagacaacaatgaagtttgccacattgattgactctttcTTTCATCAAGGATTTATCTGAAGCATatgatgctatttg-atagcatttcaCCCACAAGATAGCTTTTTCCAAAATTAGAGTCATTCCTCTCAAGCACTACTGCTGTTTATTGACT--GTTTATGTAACAGTCTAAATTCTTTGCTGTCATTCCAGCattgttcacagcatcttcatgaggagtagactccatctcaagaaaccactttctttactcacccataagaagcaactcttcatccATTTAAGTTTGTTCTTTAGatggcagcaattcagtcacatctccATGACCCATTTCTAATCCTCGTTTTCTTGCCATTTCCATCACATTTGCAGcaacttcctccactgaagtctt i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19929977 735 - 48547382 ACAcatatctcagagatattgcaggttccattataaaatacagcaataaagtgaatatcacattaaagtgagtcatacaaatttcttggcttcccagtgcacataaaagttttatttacactgtact------------gtagtctatgaagtgtgcaattgcattacgtct-aaaaaatgtacatatcttaaattaaaaatactctattactaaaaaaaatgcgaaccatcatctgagccttcagtaagaagtaattttttgttcacggagggtcttgcctctacgttgacacatattgactgaccaggatggtggctgctgaaggttgaggtgtctagtataattcttaaataagacaacaatgaagtttgccacattgattgactctttatttcatcaaggatttatctgaagcatatgatgctacttg-gtagcatttcacccacaaaatagcttttttcaaaattagagtcattcctctcaagcactactgctatttattgact--gtttatgtaacagtctaaattctttgttgtcattccagcattgttcacagtatcttcatggggagtagactccatctcaaaaaaccactttctttactcacccataagaagcaactcttcatccatttaagtttgttctttagatggcagcaattcagtcacatctccatgacccatttctaatcctcgttttcttgctatttccatcacatctgcagcaacttcctccactgaagtctt i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21289709 735 - 190850796 aggcatatctcagagatattgcagattccgttatagaccatggcaataaagtgaatgttacattaaagtgagtcatacaaatttcttggcttctcagagcacataaaaattttgtttacaccatact------------gtagtctatgaagtgtgctattgcattatatctaaaaaaaagtacataccttaaattaaaaatactctattgct--aaaaaatgctaaccatcatctgagccttcagtgagtattaattttttgctcatggagggtctggcctctatgttgacaaatgctgactgatcgggatggtggctgctgaaggctgaggtgactggtgtgactcttaaatcatacaacgatgaagtttgccacactgattgac--tttcttccatcaaggatttatctgaagcatacgatacagtttgaataacactgtgttcacatgataacttctttcaaaattggagtcagtcctctcaaacactactgctgtttattgactgagtttatgtaatattctaaattctttgctgtcatttcagcattgttcatagcatcttcctgaggagtagactccatcacaagaaaccgctttcttgactcacctgtaagaagcaactcttcagccatttaagttttatcatgtgatagcaacaattcagtcacatctccatgatccacttccaattttcattttcttgctatttccatcacatctgcagtaacttcttccactgaagtctt i calJac3.chr3 C 0 I 1204 e mm10.chr5 49271466 0 + 151834684 C e canFam3.chr3 3863735 394 - 91889043 I a score=1188855.000000 s hg38.chr4_KI270790v1_alt 166235 490 + 220246 gaacctctcaaagtcacccatgaatgttagaatgaacttctcccaaatgttgatgttttgacttcctgtcatgaatcatgaatgttcttaatggcatctagaatggtgaaacctttccagaaggttttcaatttacttttcccagatcatcagaggaatcactatctatgacagttatagccttatgaaaagtgcttcttcagtaataagacttggaagtcaaaattactgtttgatccatgggctgcagaatggatgttgtgttagcaggcatgaaaataacattaatctctttgtctatctccatcagagctcttgaatgactaggcgcattgtcaatgagcagtaacattttgaaagtaatca--ttttttctaagcagtaggtgtcaacactgggcttaaaatatacagtaaaccatgatataaacagacatgatgtcatccaggtttggttgttccattattgagcagagacagagtagatttagca s panTro4.chr4 21554013 490 + 193495092 gaacctctcaaagtcatccatgaatgttagaatgaacttctcccaaatgttgatgttttgacttcctgtcatgaatcatgaatgttcttaatggcatctagaatggtgaaacctttccagaaggttttcaatttacttttcccagatcatcagaggaatcactgtctatgacagttatagccttatgaaaagtgtttcttcagtaataagacttggaagtcaaaattactgtttgatccatgggctgcagaatggatgttgtgttagcaggcatgaaaataacattaatctctttgtctatctccatcagagctcttgaatgactaggtgcattgtcaatgagcagtaacattttgaaagtaatca--ttttttctaagcagtaggtgtcaacactgggcttaaaatatacagtaaaccatgctataaacagacatgatgtcatccaggtttggttgttccattattgagcagagacagagtggatttagca i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21731451 490 + 198332218 gaacctctcaaagtcatccatgaatgttagaacgaacttctcccaaatgttgatgttttgacttcctgtcatgaatcatgaatgttcttaatggcatctagaatggtgaaacctttccagaaggttttcaatttacttttcccagatcatcagaggaatcaatatctatgacagttatagccttatgaaaagtgtttcttcagtagtaagacttggaagtcaaaattactgtttgatccaagggctgcagaatggatgttgtgttagcaggcatgaaaataacattaatctctttgtctatctccatcagagctcttgaatgactaggcgcattgtcaatgagcagtaacattttgaaagtaatca--ttttttctaagcagaaggtgtcaacactgggcttaaaatatacagtaaaccatgctataaacagacatgatgtcatccaggtttagttgttccattattgagcagagacagagtagatttagca i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20340940 490 - 85365473 gaacctctcaaagtcatccatgaatgttagaatgaactttttccaaatgttgatattttgacttcctgtcatgaatcatgaatgttcttaatggcatctagaatggtgaaacatttccagaaggttttcaatttacttttcccagatcatcagaggaatcactatctatgacagttatagccttatgaaaagtgtttcttcagtaataagacttggatgtcaaaattactgtttgatccatgggctgaagaatggatgttgtgttagcaggcatgaaaataacattaatctctttgtctatctccatcagagctcttgaatgactaggtgcattgtcaatgagcagcaacattttgaaagtaatca--ttttttctaagcagtaggtgtcaatactgggcttaaaatatacagtaaaccatgctataaacagacgtgatgttatccaggtttggttgttccattactgagcagagacagagtagatttagca i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16807453 480 + 184069350 gaacctctcaaagtcatccatgaatgttagaatgaacttctgccaaatgttgatattttgacttcctgtcatgaatcctgaatgttcttaatggcatctagaatggtgaaacctttccagaaagttttcaatttacttttcccagatcatcagaggaatcactatctatgacagttacagccttatggaaagtgcttcttcagtgataagacttggaagtcaaaattactgtttgatccacgggctgcagaatggatgttgtgttagcaggcatgaaaataacattaatctctttgtctatctccatcagagctcttga------------attgtcaatgagcagtaacattttgaaagtaattattttttttctaagcagtaggtgtcaacactgggcttaaaatatacagtaaaccatgctataaacagacgtgatgtcatccaggtttggttgttccattattgagcagagacagagtcaatttagca i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20857317 479 + 189454096 gaacctctcaaagtcatccatgaatgttagaatgaacttctgccaaatgttgatattttgacttcctgtcatgaatcctgaatgttcttaatggcatctagaatggtgaaacctttccagaaagttttcaatttacttttcccagatcatcagaggaatcactatctatgacagttacagccttatggaaagtgcttcttcagtgataagacttggaagtcaaaattactgtttgatccacgggctgcagaatggatgttgtgttagcaggcatgaaaataacattaatctctttgtctatctccatcagagctcttga------------attgtcaatgagcagtaacattttgaaagtaatca-tttttttctaagcagtaggtgtcaacactgggcttaaaatatacagtaaaccatgctataaacagacgtgatgtcatccaggtttggttgttccattattgagcagagacagagtcaatttagca i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16447476 479 + 178775436 gaacctctcaaagtcatccatgaatgCTACAATGAACTTCTGccaaatgttgatattttgacttcctgtCATGAATcctgaatgttcttaatggcatctagaatggtgaaacctttccagaaggttttcaatttacttttcccagatcatcagaggaatcactatctatgacaGTTATAGCCTTATGGAAAGTGCTTCTTCAGTGATAAGACTTGGAAGTCAAAATTACTGTTTGATCCacgggctgcagaatggatgttgtgttagcaggcatgaaaataacattaatctctttgtctatctccatcagagctcttga------------attgtcaatgagcagtaacattttgaaagtaatca-tttttttctaagcagTAGGTGTCAACACTGGgcttaaaatatacagtaaaccatgctataaacagacgTGATGTCATCCAGGTTTGGTTGTTCCATTATTGAGCAGAGACAGAGTCAATTTAGCA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19930712 479 - 48547382 gaacctctcaaagtcatgcatgaatgttagaatgaacttctgccaaatgttgatatcttgacttcctgtcatgaatcctgaatgttcttaatggcatctagaatggtgaaacctttccagaaggttttcaatttgcttttcccagatcatcagaggaatcactatctatgacagtcatagccttatgaaaagtgcttcttcagtgataagacttggaagtcaaaattactgtttgatccacgggctgaagaatggatgttgtgttagcaggcatgaaaataacattaatctctttgtctatctccgtcagagctcttga------------attgtcaatgagcagtaacattttgaaagtaatca-tttttttctaagctgtaggtgtcaacactgggcttaaaatatacagtaaaccatgctataaacagacgtgatgtcatccaggtttggttgttccattattgagaagagacagagtagatctagca i chlSab2.chr27 C 0 C 0 e mm10.chr5 49271466 0 + 151834684 C e calJac3.chr3 21290444 1204 - 190850796 I e canFam3.chr3 3863735 394 - 91889043 I a score=2669593.000000 s hg38.chr4_KI270790v1_alt 166725 916 + 220246 taattattaagggccctgggatttttacaatgataaagaagcatttgctgcaactt-aaagtcataagctgcattagtccctaaaaagagagtcagtctcccctttgaagctttggagccagg--cattgaattcttctctctacttataaatgtcctagatggcatcttcttccaatataaatctttttctttatttttattttttgatacagggtcttactttgtcacccagg-tggggtgcagtggcatgatcatagctccctgcagccttgatctccctagctcatgcaaccctcccacctcagcctcctaaggagctgggactacgtacagtctcgagtagctggg--------------------------acaacgtgcgtgcaccaccatgccaggctaattttaattttt-tttttttttttaaagacaaggcctcactatgttgatcaggctggtctcaaattcctgggctcaagtattcctcctgccttggcctcccaaagtgttgggattacaggcatgagccaccgtgcccagccaggggcttcttcatctacactgaaaatttggttttcagaggaacaacatttatcaatgatcttagctggatcttctgaataagctgctgcggcttctacatcggcacttgctctttaaccttgcacttttgtggtatggatatggcttct-----------tcatgaaccaacctctgctagcttcaaactttcttctgcagcttccctatttctctcagcattcatagaattgaagagagttagagcctgtattagaccattcttgcattgctgtaaagaaatacctgagactggataaattacaaag-aaaaaaggtttcattggctcaccgttctgcaggctgtacaggaagcacagcagcatctgcttctggggaggcctcagaaagcttccactcatggcagaagg s panTro4.chr4 21554503 916 + 193495092 taattattaagggccctgggatttttacaatgataaagaagcatttgctgcaactt-aaagtcataagctgcattagtccctaaaaagagagtcagtctcccctttgaagttttggagccagg--cactgaattcttctctctacttataaatgtcctagatggcatcttcttccaatataaatctttttctttatttttattttttgatacagggtcttactttgtcacccagg-tggggtgcagtggcatgatcatagctccctgcagccttgatctccctagctcatgcaaccctcccacctcagcctcctaaggagctgggactacgtacagtctcgagtagctggg--------------------------acaacgtgcatgcaccaccatgccaggctaattttaattttt-tttttttttttaaagacaaggtctcactatgctgatcaggctggtctcaaattcctgggctcaagtaatcctcctgccttggcctcccaaagtgttgggattacaggcatgagccaccatgcccagccaggggcttcttcatctacactgaaaatttggttttcagaggaacaacatttatcaatgatcttagctggatcttctgaataagctgctgcggcttctacatcggcacttgctctttaaccttgcacttttgtggtgtggatatggcttct-----------tcatgaaccagcctctgctagcttcaaactttcttctgcagcttccctatctctctcagcattcatagaattgaagagagttagagcctgtattagaccattcttgcattgctgtaaagaaatacctgagactggataaattacaaag-aaaaaaggtttcattggctcaccgttctgcaggctgtacaggaagcacagcagcctctgcttctggggagccctcagaaagcttccactcatggcagaagg i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21731941 899 + 198332218 taatgattaagggccctgggatttttacaatgataaaggagcatttgctgcaactt-aaagtcataagctgcattagcccctaaaaagagagtcagtctcccctttgaacctttggagccagg--cattgaattcttctctctacttataaatgtcctagatggcatcttcttccaatataaatctttttc------tttattttttgatacagggtcttactttgtcacccagg-tgggctgcagtggcatgatcatagctcactgcagccttgatctccctagctcatgcgaccctcccacctcagcctcctaaggagctgggactatgtacagtctcgagtagctggg--------------------------gcaacgtgcatgcaccaccatgccaggctaattttaa-------tcttttttttaaagacaaggtctcactatgttgatcaggctggtctcaaactcctgggctcaagtaatcctcctgccttggcctcccaaagtgttgggattacaggcatgagccaccgtgcccagccaggggcttcttcatctacactgaaaatttggttttcagaggaacaacatttatcaatgatcttagctggatcttctgaataagctgctgcagcttctacattggcacttgctctttaaccttgcacttttgcggtatggatatgg---ct-----------tcatgaaccaac--ctgctagcttcaaactttcttctgcagcttccctatctctctcagcattcagagaactgaagagagttagagcctgtattagaccattcttgcattgctgtaaagaaatacctgagactggataaattacaaag-aaaaaaggtttcgttggctcacggttctgcaggctgtacaggaagcatagcagcatctgcttctggggaggcctcagaaagcttccactcatggcagaagg i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20341430 912 - 85365473 taattattaagggccctgggatttttacaatgataaagaagcatttgctgcaacttaaaagtcataagctgcattagcccctaaaaagagagtcagtctcccctttgaagctttgaagccagg--cattgaattcttctctctagttataaatgtcctacatggcatcttcttccaatacaagtc-ttttctttatttttatttttggatacagggtcttactttgtcacccagg-tggggtgcagtggcatgatcatagctcactgcagccttgatctcccgagctcatgcaaccttcccacctcagccttctaaggagctgtgactacgtacagtctcgagtagctggg--------------------------acaatgtgcatgcaccaccatgccagactaatttaaa----a-tttttttaaaaaaagacaaggtctcactatgttgatcaggctggtctcaaactcctgggctcaagtaattctcctgccttggcctcccaaagtgttgggattacaggcatgagccaccgtgcccagccaggggcttcttcatctacactgaaaatttggttttcagaggaacaacatttatcaatggtcttaggtggatcttctgaataagctgctgcagcttctacatcggcacttgttctttaaccttgcacttttgtggtatgggtatggcttct-----------tcatgaaccagcctctgctagcttcaaactttcttctgcagcttccctatctctctcagcattcatagaattgaagagagttagagcctgtattagaccattcttgcattgctgtaaagaaatacctgagactggataaattacaaag-aaaaaaggtttcattggctcacggttctgcaggctgtacaggaagcatagcagcatctgcttctggtgaggcctcagaaagctttcactcatggcagaagg i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16807933 938 + 184069350 taattattaagggccctggaatttttacaatgataaaggagcatttgctgcaactt-aaagccatcagctgcattagcccctaaaaagagagtcagtctcccctttcaagctttgaagccagg--cattaaattcttctctctagttataaatgtcctagatggcatcttcttccaatacaagtctttttctttatttttgttttttgatacagggtcttagtttgtcacccagg-tggggtgcagtggcatgatcatagctcactgaagccttgatctccctagctcatgcaaccctcccacctcagtctcctaaggagctgggactacgtacagtcttgagtagctgggactacgtacagtcttgagtagctggaacaacgtgcatgtgccactatgccaggctaattttta----a-tttttttaaaaaatgacaaggtctcactatgttgatcaggctggtctcaaactcctgggctcaagcaatcctcctgcctcggcctcccaaagtgttaggattgcaggcatgagccaccatgcccagccaggggcttcttcatctacatggaaaatttggttttcagagcaacaacatttatcaatgatctcgtctggatcttctgaataagctgctgcagcttctacatcagcacttgctctttaaccttgcacttttgtggtatggatatggcttct-----------tcatgaaccaacctctgctagcttcaaactttcttcggcagcttcccgatctctctcaccatatacagaattgaagagagttagagcctgcattagaccattcttgcattgctgtaaagaaatacctgaggctggataaattacaaag-gaaaaaggtttcactggctcacggttctgcaggctgtacagagagcatagaagcatctgcttctggggaggcctcagaaagcttccactcatggcagaagg i rheMac3.chr5 C 0 I 73 s macFas5.chr5 20857796 938 + 189454096 taattattaagggccctggaatttttacaatgataaaggagcatttgctgcaactt-aaagccatcagctgcattagcccctaaaaagagagtcagtctcccctttcaagctttgaagccagg--cattaaattcttctctctagttataaatgtcctagatggcatcttcttccaatacaagtcattttctttatttttgttttttgatacagggtcttagtttgtcacccagg-tggggtgcagtggcatgatcatagctcactgaagccttgatctccctagctcatgcaaccctcccacctcagtctcctaaggagctgggactacgtacagtcttgagtagctgggactacgtacagtcttgagtagctgggacaacgtgcatgcgccactatgccaggctaattttta----a-ttttttaaaaaaatgacaaggtctcactatgttgatcaggctggtctcaaactcctgggctcaagcaatcctcctgcctcggcctcccaaagtgttaggattgcaggcatgagccaccatgcccagccaggggcttcttcatctacatggaaaatttggttttcagagcaacaacatttatcaatgatctcgtctggatcttctgaataagctgctgcagcttctacatcagcacttgctctttaaccttgcacttttgtggtatggatatggcttct-----------tcatgaaccaacctctgctagcttcaaactttcttcggcagcttcccgatctctctcaccatatacagaattgaagagagttagagccggcattagaccattcttgcattgctgtaaagaaatatctgaggctggataaattacaaag-aaaaaaggtttcactggctcacggttctgcaggctgtacagagagcatagaagcatctgcttttggggaggcctcagaaagcttccactcatggcagaagg i macFas5.chr5 C 0 I 1 s papAnu2.chr5 16447955 907 + 178775436 TAATTATTAAGGGCCCTGGAATTTTTACAATGATAAAGGAGCATTTGCTGCAACTT-AAAGCcatcagctgcattagcccctaaaaAGAG----AGTCTCCCCTTtcaagctttgaagccagg--cattaaaTTCTTCTCTCTAGTTATAAatgtcctagatggcatcttcttccaatacaagtctttttctttatttttgttttttgatacagggtcttactttgtcacccaag-tgtggtgcagtggcatgatcatagctcactgaagccttgatctCCCTAGCTCATGcaaccttcccacctcagtctcctaaggagctgggactacgtacagtctcgagtagctggg--------------------------acaacgtgcatgcgccactatgccaggctaattttta----a-ttttttaaaaaaatgacaaggtctcactatgttgatcaggctggtctcaaactcctgggctcaagcaatcctcctgcctcggcctcccaaagtgttaggattgcaggcatgagccaccatgcccagccaggggcTTCTTCATCTACATGGAAAATTTGGTTTTCAGAGCAACAACATTTATCAATGATCTCGTCTGGATCTTCTGAATAagctgctgcagcttctacatcagcacttgctctttcaccttgcacttttgtGGTATGGATATGGCTtct-----------tcatgaaccaacctctgctagcttcaaacttt-ttcGGCAGCTTCCCGATCTCTCTCAGCATatatagaattgaagagagttagagcCTGCATtagaccattcttgcattgctgtaaagaaatacctgaggctggataaattacaaag-aaaaaaggtttcactggctcacggttctgcaggctgtacagagaGCATagaagcatctgcttctggggaggcctcagaaagcttccactcatggcagaagg i papAnu2.chr5 C 0 I 1 s chlSab2.chr27 19931191 912 - 48547382 taattattaagggccctggaatttttacaatgataaaggagcatttgctgcaactt-aaagccatcagctgcattagcccctaaaaagagagttagtctcccttttcaagctttgaagccagg--cgttgaattcttctctctagttataaatgtcctagatggcatcttcttccaatacaagtctttttctttatttttgttttttgatacagggtcttactttgtcacccagg-tagggtgcagtggcatgatcatagctcactgaagccttgatctccctagctcatgcaaacctcccacctcagtctcctaaggagctgggactacgtacagtctcgagtagctggg--------------------------acaacgtgcatgtgccactatgccaggctaattttta----attttttttaaaaaatgacaaggtctcactgtgttgatcaggctggtctcaaactcctgggctcaagcaatcctcctgccttggcctcccaaagtgttaggattgcaggcatgagccaccatgcccagccaggggcttcttcatctacactgaaaatttggttttcagagcaacaacatttatcagtgatcttgtctggatcttctgaataagctactgaagcttctacatcagcacttgctctttaaccttgcac-tttgtggtatggatatggcttct-----------ttatgaaccaacctctgctagtttcaaactttcttcggcagcttcccgatctctctcagcatgcatagaattgaagagagttagagcctgcattagactattcttgcattgctgtaaagaaatacctgaggctggataaattacaaag-aaaaaaggtttcactggctcacggttctgcaggctgtacagagagcatagcagcatctgcttctggggaggcctcagaaagcttccactcatggcagaagg i chlSab2.chr27 C 0 I 1 s calJac3.chr3 21291648 914 - 190850796 taattattaaaggcccttggatttttacaataatagaggagaatttgctgctaatt-aaagtcatcagttgcattagcccctaaaaggagagtcagcatccactttgaccctttgaatccaggcacattgaa---ttctctctagttataaatatcttagatgtcatcttcttccaatacaacattttttctttatttttattttttgatacagggtc-tactttgtcacgcaggctagagtgcagtggcctaatcatagctcactgcagctttgatctccctcgctcatgcagccctcccacctcagcctcataaggagctgggactatgtgcagtcctaagtagctggg--------------------------atgatgtgcatgcaccaccatgtcaggctaattttta----a-tttgtttt----aagacaaggtctcactacattgatcaggctggtctcaaactcctgggctcaagcaatcctcctgtcttggcctcccaaagtgctgagattacaggcacgagccatcatgcccagccagaggcttcttcatctacactgaaaatttgattttcagtgcaaccacatttatctatgatcttagctggatcttctg-ataagcagctgcagcttctacatcagcacttgctctttaaccttgcacttctgtggtatggatatggcttcttatcctaaggcttatgaaccaacctctgctagattcaaacttttttctgtggtttccttatctctctcagcattcttagaattcaaaag----agagcctgtattaggccattcttgcactgctataaagaaatacctgagaccgagtaaattacaaagaaaaaaaggtttcattggctaatggttctgcaggctgtacaagaagcatagcagcatctgcttctggggaggcctcagaaagcttccactcatggccaaagg i calJac3.chr3 I 1204 C 0 e mm10.chr5 49271466 0 + 151834684 C e canFam3.chr3 3863735 394 - 91889043 I a score=131765.000000 s hg38.chr4_KI270790v1_alt 167641 79 + 220246 caaa--gggagcagacacatgacagagcaaaagcagaagtaagagagagtgagggaggggaatgc--cacactttttttt---tta--- s panTro4.chr4 21555419 79 + 193495092 caaa--gggagcagacacatgacagagcaaaagcagaagtaagagagagtgagggaggggaatgc--cacactttttttt---ttt--- i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21732840 78 + 198332218 caaagtgggagcagacacatgacagaccaaaagtagaagtaagagagagtgagggagggggatgt--cacattttttttt--------- i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20342342 78 - 85365473 caaagtgggagcagacacatgacagagcaaaagcagaagtaagagagagtgagtgagggggatgc--cacactttttctt--------- i nomLeu3.chr20 C 0 C 0 s macFas5.chr5 20858735 79 + 189454096 -caagtgggagcagacacatgacacagcaaaagcaggagcaagagagagtgagggagggggatgctacacaatttttttt--------- i macFas5.chr5 I 1 C 0 s papAnu2.chr5 16448863 79 + 178775436 -caagTGGGAGCAGACACATGACACAGCAAAAGCAGGggcaagagagagtgagggagggggatgctacacactttttttt--------- i papAnu2.chr5 I 1 C 0 s chlSab2.chr27 19932104 82 - 48547382 -caagtgggagcagacacatgacagagcaaaagcaggagcaagagagagtgagggagggggatgctacacacctttttttttt------ i chlSab2.chr27 I 1 C 0 s calJac3.chr3 21292562 78 - 190850796 caaaggaggagcacacatatcacagagcaaaagcaggaataagacag---gtggtagggggaagc--cataccccgcccc------ccc i calJac3.chr3 C 0 C 0 e mm10.chr5 49271466 0 + 151834684 C e rheMac3.chr5 16808871 73 + 184069350 I e canFam3.chr3 3863735 394 - 91889043 I a score=3534236.000000 s hg38.chr4_KI270790v1_alt 167720 1221 + 220246 tttttatttatttattttttttgagacagagcctcactcttt-cacccaggctgaagtgtagtggtacggccttggctcatcacaacctctgcctcttgggttcaagtgattcacctacctcagcttactgagtgtctgggattataggcatgcactatcatgcccagctaattttttttgtaattttagtagagacagggtttcaccatgttagccaggctggtctc--------gaactcctgacctcaagtgattatgtccatgtcagccttccaaagcgctgagattacctgcgtgagccaccacgcccagccaatgccatacactttcaaatgaccagctattgcaaaaacccacacactattgtgagaacagtaccaaggggatggtgctaacccattcctgagaaatcca-ccccataatccaattttctcccacctccaacactggggattgtaactcgacataagatttgggcagggacacatatccaaactgtatcagagacttcctctggattaggctttggcttaagggggagttgtggcaggtttgatcttttacccggaccactaaaacattctttatatcagcaataaagctgtttcactttcttactattcatgtcttcactagaatagcaatattaatttcctactagaacttttcctttgctgtgacaacttaactaacagtttgacatgag--atttcagctattttggctttggacatgccctcctcattaagcttgattatttctagcttttgatttaaaagtgagagatgtgtgactcttcctttcccttgaacacttagaggccattaaaaagttattaattgaactaattgtaatactgttgtatctcaggaaatagggaggcccaaggagaagaaaagacatggggaatagctggtcagtgtagcagtcagaacacacacaacatttattgattacgttcactgtctcatataggtatggttggtggcactccaaaacacttacgatagtaacctcaa--------------agatcatcataaaagatataatgataatgaaaaactatgaaatattgcaacgatcataatgtgactcagaaacatgaagtgaacatgtgtttttggaagaatggcgctgatagtattgcaaaaggcagggttgccatgaaacttcaatttgtaaaaaatgcagtatctgagaagtgcaataaagcaaagaacaatacgatgaggcatgcc s panTro4.chr4 21555498 1214 + 193495092 tttt------ttttttttttttgagacagagcctcactcttt-cacccaggctgaagtgtagtggtacgatcttggctcaccacaacctctgcctcttgggttcaagtgattcacctacctcagcttactgagtgtctgggattacaggcatgcactatcatgcccagctaa-tttttttgtaattttagtagagacagggtttcaccatgttagccaggctggtctc--------gaactcctgacctcaagtgattacgtccatgtcggccttccaaagtgctgagattacctgcgtgagccaccacgcccagccaatgccatacactttcaaatgaccagctattgcaaaaactcacacaccattgtgagaacagtaccaaggggatggtgctaaaccattcatgagaaatcca-ccccataatccaattttctcccacctccaacactggggattgtaattcgacataagatttgggcagggacacatatccaaactgtatcagagacttcctctggattaggctttggcttaagggggagttgtggcaggtttgatcttttacccggaccactaaaacgttctttatatcagcaataaagctgtttcactttcttactattcatgtcttcactagaatagcaatattaatttccttctagaacttttcctttgctgtgataacttaactaacagtttgacatgag--atttcagctattttggcttttgacatgccctcctcattaagcttgattatttctagcttttgatttaaaagtgagagatgtgtgactcttcctttcccttgaacacttagaggccattaaaaagttattaattgaactaattgtaatactgttgtgtctcaggaaatagggaggcccaaggagaagaaaagacatggggaatagctggtcagtgtagcagtcagaacacacacaatatttattgatgacgttcactgtctcatataggtatggttggtggcactccaaaacagttacgatagtaacctcaa--------------agatcatcataaaagatataatgataatgaaaaactatgaaatattacaacgatcataatgtgactcagaaacatgaagtgaacatgtgtttttggaagaatggcgctgatagtattgcaaaaggcagggttgccatgaaacttcaatttgtaaaaaatgcagtatctgagaagtgcaataaagcaaagaacaatacaatgaggcatgcc i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21732918 1228 + 198332218 ----------ttttttttttttgagacagagcctcactctttccacccaggctgaagtgtagtggtacgatcttggctcaccacaacctctgcctcttgggttcaagtgattcacctacctcagcttactgagcgtctgggattacaggcacacactatcatgcccagctaa-tttttttgtagttttagtagagacagggtttcaccatgttggccaggctggtctcgaacacctgaacacctgacctcaagtgattatgtctatgtcggccttccaaagtgctgagattacctgtgtgagccaccacgcccagccaatgccataaactttcaaatgaccagatattgcaagaactcacacactattgtaagaacagtaccaaggggatggtgctaaaccattcatgagaaatcca-ccccatgatccaattttctcccgcctccaacactggggattgtaattcaacatgagatttgggcagggacacatatccaaactgtatcagagacttcctctggattaggctttggcttaagggggtgttgtggcaggtttgatcttttacccagaccactaaaacgttctttatatcagcaataaagctgtttcactttcttactattcatgtcttcactagagtagcaatattaatttccttctagaacttttcctttgccatggcaact----taacagtttgacatgag--attttagctattttggctttcgacatgccctcctcactaagcttgattatttctagcttttgatttaaaagtgagagatgtgtgagtcttcctttcccttgaacacttacaggccattaaaaagttattaattgaactaattgtaatactgttgtgtctcaggaaatagggaggcccaaggagaagaaaagacatggggaatagctggtcagtgtagcagtcagaacacacacgacatttattgattatgttcactgtctcat-tagatatggttggtggcactccaaaatagttacgatagtaacctcaaagatcactaaccacagatcatcataaaagatataatgataatgaaaaactatgaaatattacaacgatcataatgtgactcagaaacatgaagtgaacatgtgtttttggaaaaatggcgctgatagtattgcaaaagtcagggttgccatgaaacttcaatttataaaaaatgcagtatctgagaagtgcaataaagtaaagaacaatacaatgaggcatgcc i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20342420 1223 - 85365473 ----------tttttttttttggagacagagcctcactcttt-cacccaggctgaagtgtagtggtacgatcttggctcaccacaacctctgcatcttgggttcaagtgattcacctacctcagcttactgagtgtctgggattataggcatgcactatcatgcccagctaa-tttttttgtaattttagtagagacaaggtttcactacgttagccaggctggtctc--------gaactcctgacctcaagtgattacatccatgtcggccttccaaagtgctgagattacctgcgtgagccaccacgcccagccaatgccatacactttcaaatgaccaggtattgcaagaactcacacactattgtgagaacagtaccaaggggatggtgctaaaccattcatgagaaatcca-ccccatgatccaattttctcccacctccaacactggggattgtaattcgacatgagatttgggcagggacacatatccaaactatatcagagacttcctctggatcaggctttggcttaagggggtgttgtggcaggtttgattttttacccagaccactaaaactttctttatatcagcaataaagctgtttcac-ttcttattattcatgtcttcactaaagtagcaatattaatttccttctagaacttttcctttgcagtgacaacttaactaacagtttgacatgag--atttcagctattttggctttcgatatgccctctgcactaagcttgattatttctagcttttgatttaaaagggagagacatgtgactcttcctttcccttgaacactcagaggccattaaaaagttattaattgaactaattgcaatactgttgtgtctcagaaaatagggaggcccaaggagaagaaaagacatggggaatagctggtcagtgcagcagtcagaacacacacaacatttattgattatgttcactgtcttatataggtctggttggtggcactccaaaacagttacaatagtaacctcaaagatcactgatcacagatcatcttaaaagatataatgataatgaaaaactatgaaatattacaatgatcataatgtgactcagaaacatgaagtgaacatgtgtttttggaagaatggcgctgatagtattgcaaaaggcagggttgccatgaaacttcaatttgtaaaaaatgcagtatctgaaaagtgcaataaagcaaagaacaatacaatgagacatgcc i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16808944 1229 + 184069350 ttttttttttttttttttttttgagacagagcctcactcttt-cacccaggctgaagtgtagtggtacaatcttggctcaccgcaacttctgcctcctgggttcaagtgattcacctacctcagcttcctaagtgtctggaattacaggcatgcacaatcatgcccaactaa---attttgtatttttagtagagagagggtttcaccatgttggccaggctggtctc--------gaactcccgacctcaagtgattacatccacgttggccttccaaagtgctgagattaccagcatgggccaccacgcccagccaatgccacacactttcaaatgaccagatattgcaagaactcacacactattgtgagaacagtaccaaggggatggtgctaaaccattcatgagaaacccacccccatgatcccattttctcccacctctaacactggggattgtaattcgacatgagatttgggcagggacacatatccaaactatatcagagacttcctctggattaggctttggcttaagaacgtgttgaggcaggtttgatcttttacccagaccactaaaactttctttatatcagcaataaagctgtttcactttcttattattcatgtcttcactagagtagcaatattaatttccttctagaaattttcctttgcagtgacaacttaactaacagtttgacatgag--atttcagctatattggctttcgacatgccctcctcaccaagcttgattatttctagcttttgatttaaaagtgagagacgtgcgactcttcctttcccttgaacacttagaggccattaaaaagttattaattgaactagttgcaatgctgttgtgtctcaggaaatagggaggcccaaggagaagaaaagacacagggaatagctggtcagtgcagcagtgagaacacacacaacatttatt----atgttccctgtcctatgtaggtatggctgctggcactccaaaacagttacaatagtaacctcaaagatcactaatcgcagatcgtcataaaagatataatgataatgaaaaactatgaaatattacaatgatcataatgtgactcagaaacatgaaatgaacatgtgtttttggaaaaatggcgctgatagtgttgcaaaacacagggttgccatgaaactacaatttgtaaaaaatgcagtatttgagaagtgcaataaagcaaagcacaacacaatgaggcatgcc i rheMac3.chr5 I 73 C 0 s macFas5.chr5 20858814 1215 + 189454096 --------------ttttttttgagacagagcctcactcttt-cacccaggctgaggtgtagtggtacgatcttggctcaccgcaacttctgcctcctgggttcaagtgattcacctacctcagcttcctaagtgtctggaattacaggcatgcacaatcatgcccaactaa---attttgtatttttagtagagagagggtttcaccatgttggccaggctggtctc--------gaactcccgacctcaagtgattacatccacgttggccttccaaagtgctgagattaccagcatgggccaccacacccagccaatgccacgcactttcaaatgaccagatattgcaagaactcacacactattgtgagaacagtaccaaggggatggtgctaaaccattcatgagaaacccacccccatgatccaattttctcccacctccaacactggggattgtaattcgacatgagatttgggcagggacacatatccaaactatatcagagacttcctctggattaggctttggcttaagagggtgttgaggcaggtttgatcttttacccagaccactaaaactttctttatatcagcaataaagctgtttcactttcttattattcatgtcttcactagagtagcaatattaatttccttctagaaattttcctttgcagtgacaacttaactaacagtttgacatgag--atttcagctatattggctttcgacatgccctcctcaccaagcttgattatttctagcttttgatttaaaagtgagagacgtgcgactcttcctttcccttgaacacttagaggccattaaaaagttattaattgaactagttgcaatgctgttgtgtctcaggaaatagggaggcccaaggagaagaaaagacacagggaatagctggtcagtgcagcagtgagaacacacacaacatttatt----atgttccctgtcctatgtaggtatggctgctggcactccaaaacagttacaatagtaacctcaaagatcactaatcgcagatcgtcataaaagatataatgataatgaaaaactatgaaatattacaatgatcataatgtgactcagaaacatgaaatgaacatgtgtttttggaaaaatggcgctgatagtgttgcaaaacacagggttgccatgaaactacaatttgtaaaaaatgcagtatttgagaagtgcaataaagcaaagcacaatacaatgaggcatgcc i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16448942 1219 + 178775436 ----------ttttttttttttgagacagagcctcactcttt-cacgcaggctgaagtgtagtggtacgatcttggctcaccgcaacttctgcctcctgggttcaagtgattcacctacctcagcttcctgagtgtctggaattacaggcatgcacaatcatgcccaactaa---attttgtatttttagtagagagagggtttcaccatgttggccaggctggtctc--------gaactcctgacctcaagtgattacATCCacgttggccttccaaagtgctgagattaccagcatgggccaccacgcccggtcaatgccacacactttcaaatgaCCAGATATTGCAAGAACTCACATACTATTGTGAGAACagtaccaaggggatggtgctaaaccattcatgagaaacccacccccatgatccaattttCTCCCACCTCCAACGCTGAGGATtgtaatttgacatgagatttgggcagggacacatatccaaactatatcagagacttcctctggattaggctttggcttaagaggGTGTTGAGGCAGGTTTGATCTTTTacccagaccactaaaactttctttatatcagcaataaagctgtttcactttcttattattCATGTCTTCACTAGAGTAGCAATATTAATTTCCTTCTAGAAATTTTCCTTTGCAGTGACAACTTAACTaacagtttgacatgag--atttcaGCTATATTGGCTTTCGACATGCCCTCCTCACCAAGCTtgattatttctagcttttgatttaaaagtgAGAGACGTGCGACTCTTCATTTcccttgaacacttagaggccattaaaaagttattaattgAACTAGTTGCAATGctgttgtgtctcaggaaatagggaggcccaaggagaagaaaagacacaGGGAATAGCTGGTCAGTgcagcagtcagaacacacacaacatttatt----atgTTCCCTGTCCTATGTAGGTATGGCTGCTGGCACTCCAAAACAGTTACAATAGTAACCTCAAAGATCACTAATCACAGATCGTCATAAAAgatataatgataatgaaaaactatgaaatattacAATGATCATAATGTGACTCAGAAACATGAAATGAACATGTGTTTTTGGAAAAATGGCGCTGACAGTGTTGCAAAACGCAGGGTTGCCATGAAActacaatttgtaaaaaatgcagtatctgagaagtgcaataaagcaaagcacaatacaATGAGGCATGCC i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19932186 1223 - 48547382 ------ttttttttttttttttgagacagagcctcactcttt-cacccaggctgaagtgtggtggtacgatcttggctcaccgcaacctctgcctcctgggttcaagtgattcacctacctcagcttcctgagtgtctggaattacaggcacgcacaatcatgcccaactaa---attttgtatttttagtagagagagggtttcaccatgttggccaggctggtctc--------gaactcctgacctcaagtgattacatccacgatggccttccaaagggctgagattaacagcgtgggccaccacgcccggccaatgccacacactttcaaatgaccagatattgcaagaactcacacactattgtgagaacagtatcaaggggatggtgctaaaccattcatgagaaacccacccccatgatccaattttctcccacctccaacactggggattgtaattcgacatgagatttgggcagggacacatatccgaactatatcagagacttcctctggattaggctttggcttaagagggtgttgtggcaggtttgatcttttacccggaccactaaaattttctttacatcagcaataaagttgtttcaccttgttattattcatgtcttcactagagtagcaatattaatttcgttctagaaattttcctttgcagtgacaacttaactaacagtttgacatgag--atttcagctatattggttttcgacatgccctcctcaccaagcttgattatttctagcttttgatttaaaagtgagagacgtgcaactcttgctttcccttgaacacttagaggccattaaaaagttattaattgaactaattgcaatactgttgtgtctcaggaaatagggaggcccaaggagaagaaaagacatagggaatagctggtcagtgcagcagtcagaacacatacaacatttatt----atgttccctgtcctacgtaggtaaggctgctggcactccaaaacagttacaatagtaacctcaaagatcactaatcacagatcgtcataaaagacataatgataatgaaaaactatgaaatattacaatgatcataatgtgactcagaaacatgaaatgaacatgtgtttttggaaaaatggcgctgatagtgttgcaaaacgcagggttgccacgaaactacaatttgtaaaaaatgcagtatctgagaagtgcaataaagcaaagcacaatacaatgaggcatgcc i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21292640 1205 - 190850796 -----cccttttttttttttttgagacagaccctcactcttt-cacccaggctgaagtgttatggcacaatctcagctcactacaacctctgccttttgggttcaactgattcacctacctcagcttccagagtagcggggattactggcatgcaccatcatgcccaggtac-tcttttcatattgttagtagagacagggttttactacgttgggcaggctggtctc--------aaacacctgacctcaagtgattaagcccatgttggccttccaaagtgctggtatta----cacgagccacaacacccggccaatgccacacacttttaaatgaccacatattgcaagaagtcactaattattgtgagaacagcaccaagggaatggtgctaaacaattcatgagaaatccactactatga---aattttctcccacgtccaacactga-actcagaattggacatgagatttgggtagggacacatatcgaaactatattagcaccttacgctggatgaggctttggcttaagggagtgttgtggctggtttgatcttttacctggaccactaaaacttactttataccagcaataaaactgcttcactttcttattattcatgtgttcactagagtaacaatattaatttccttctagaacttttcctttgcagtgaaaacttaagtaa----ttgacacaagacattttggctattttggctttcaacatgcctttctcactaagcttgattatttctagcttttgatttaaaagtgagagacatatgaatcttcctttcccctgaacacgtagaggccattgaaaagttattaactgaactaactataatactgttgtgtctcagacaatagggaggctcaaggagaagaaaagacatggggaatagctggtc------------agaacacacacagcattgattgatcacgttcactgccttatataggtgtggttgatggtgctcc-aaacagttacggcagtaagatcactgatcactgatcatagaccatcatagaagatacaaggataatgagaaagtatgaaatattacaatgatcataatgagactcagaaacactaagtaa--ttgtacttttggaaaaatggcgccgatactgtttcaagaggcagggttgccatgaaactacaatttgtaaaaattgcagtatctgagaagtgcaataaagcaaagcacaatacagtgaagcatgcc i calJac3.chr3 C 0 C 0 e mm10.chr5 49271466 0 + 151834684 C e canFam3.chr3 3863735 394 - 91889043 I a score=771909.000000 s hg38.chr4_KI270790v1_alt 168941 234 + 220246 tgTATGTTTTATATTCTCCACTAAATGTCAAGCTCCTTTATGGTGCAGCTATTGCCTCATGCATCTTAAAATCCCTTACCATACCTTCTGAATGTGCCACACATATTAAAGACACAACAGACCTTAGCTGAAATTAGGAAAATTATTACaataaaaacacttgttactgaacaattacacattgtgtcaggctctattttaagt-cttcatgtcacttgcctttactaacaaaaa s panTro4.chr4 21556712 234 + 193495092 tgTATGTTTTATATTCTCCACTAAATGTTAAGCTCCTTTATGGTGCAGCTATTGCCTCATGCATCTTAAAATCCCTTACCATACCTTCTGAATGTGCCATACATATTAAAGACACAACAGACCTTAGCTGAAATTAGGAAAATTATTACaataaaaacacttgttactgaacaattacacattgtgtcaggctctattttaagt-cttcatgtcatttgcctttactaacaaaaa i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21734146 234 + 198332218 tgTGTGTTTTATATTCTCCACTAAATGTTAAGCTCCTTTATGGTGCAGCTATCGCCTCATGCATCTTAAAATCCCTTACCGTACCTTCTGAATGTGCCACACGTATTAAAGACACAACAGACCTTTGCTGAAATTAGGAAGATTATTACaataaaaacacttgttactgaacaattaaacattgtgtcggcctctattttaagt-cttcatgtcatttgcctttactaacaaaaa i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20343643 234 - 85365473 tgTATGTTTTATATTCTCCACTAAATGTTAAGTTCCTTTATGGCGCAGCTATTGCCTCATGCATCTTAAAATCCCTTACCGTACCTTCTGAATGTGCCACACATATTAAAGACACAACAGACCTTTGCTGAAATTAGGAAGATTATTACaataaaaacacttgttactgaacaattacacattgtgccgggctctattttaagt-cttcatgtcattcgcctttactaacaaaaa i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16810173 234 + 184069350 tgTATGTTTTAGATTCTCCACTAAATGTTAAGCTCCTTTATGGCGCAGCTATTGCCTCACGCATCTTAAAAGCCCTTACCGTACCTTCTGAATGTGCCGCACATATGAAAGACACAACAGACCTTTGCTGAAATTACGAAGATTATTacaataaaaacacttgtgactgaacaattacacattgtatcgggctctattttaagt-cttcatgtcatttgcctttattaacaaaaa i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20860029 234 + 189454096 tgTATGTTTTAGATTCTCCACTAAATGTTAAGCTCCTTTATGGCGCAGCTATTGCCTCACGCATCTTAAAAGCCCTTACCGTACCTTCTGAATGTGCCGCACATATGAAAGACACAACAGACCTTTGCTGAAATTACGAAGATTATTacaataaaaacacttgtgactgaacaattacacattgtatcgggctctattttaagt-cttcatgtcatttgcctttattaacaaaaa i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16450161 234 + 178775436 TGTATGTTTTAGATTCTCCACTAAATGTTAAGCTCCTTTATGGCGCAGCTATTGCCTCACGCATCTTAAAAGCCCTTACCATACCTTCTGAATGTGCCGCACATATGAAAGACATAACAGACCTTTGCTGAAATTACGAAGATTATTACAATAAAAACACTTGTGACTGAACAATTACACATTGTATCGGGCTCTATTTTAAGT-CTTCATGTCATTTGCCTTTATTAACAAAAA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19933409 234 - 48547382 tgTATGTTTTAGATTCTCCACTAAATGTTAAGCTCCTTTATGGCGCAGCTATTGCCTCAAGCATCTCAAAAGCCCTTACAGTACCTTCTGAATGTGCCGCACATATGAAAGACGCAACAGACCTTTGCTGAAATTACGAAGATTATTacaataaaaacacttgtgactgaacaattacacattgtatcgggctctattttaagt-cttcatgtcatttgcctttattaacaaaaa i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21293845 230 - 190850796 tgTATGTTTTACACTCTCCACTAAATGTTCAACTCCTGTATGGCACAGCTATTGCCTCATGCAACTTAAAATCTCTTACTCTACCTACTGAGTGTGCCACACATTTTAAAGACAGAGCAGACCTTTGCTAAAATTAGGAAGATTATTATGATAAAATCACtag----tgaacaattacaaattgtgtcgggctctattttaagt-ctgtatatcatttgctttcattagtaaaaa i calJac3.chr3 C 0 C 0 s mm10.chr5 49271466 228 + 151834684 TGCAAGTTTTATCTTCTCCACTAAATGTCAAACTCCTTTATGGTACAGCTGTTGCCTTGAGCATTTTCAATTCCCTTCCTGTAACTTCTGAGCACACTGCACATGTTAGAGATACCATAAACACTGACTACACTTATGAAGATCGTTACTACAAAACCATCTGTTAGTGGAT------ATATTTTGTAGGACTCTACTGTAAATAATTCATACCATTAACATT-ATGATTAAAAA i mm10.chr5 C 0 I 311 e canFam3.chr3 3863735 394 - 91889043 I a score=262247.000000 s hg38.chr4_KI270790v1_alt 169175 96 + 220246 tctcatgaaggtcggactatcattatctcaaatttattgataaggtcactgaacctaacataagtaacttgcccgagatcatacgactaatgattg s panTro4.chr4 21556946 96 + 193495092 tctcatgaaggtcggactatcattatctcaaatttattgataaggtcactgaacctaacataagtaatttgcccaagatcatacaactaatgattg i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21734380 88 + 198332218 cctcatgaaggtcggactatcattatctcaaatttattgataaggtcactgaacctaagataagtaacttgcccaagatc--------aatgattg i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20343877 96 - 85365473 cctcatgaaggtcggactatcattatctcaaatttattgataaggtcactgaacctaagataagtaacttgcccaagatcatacgactaatgattg i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16810407 95 + 184069350 cctcatgaaggtcggactatcattatctccaatttattcataaggtcaccgaacctcagataagtaacttgcccaagatcata-gactagtgattg i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20860263 95 + 189454096 cctcatgaaggtcggactatcattatctccaatttattcataaggtcactgaacctcagataagtaacttgcccaagatcata-gactagtgattg i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16450395 95 + 178775436 CCTCATGAAGGTCCGACTATCATTATCTCCAATTTATTCATAAGGTCACTGAACCTCagataagtaacttgcccaagatcata-gaCTAGTGATTG i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19933643 96 - 48547382 cctcatgaaggtcggactatcattatctccagtttattcataaggtcactgaacctcagataagtaacttgcccaagatcatacgactagtgattg i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21294075 96 - 190850796 actcatgtagctcacactatcattatctccattttattgatgaggttactgaacctaagataagtaacttgcccaagatcataaggctcatgattc i calJac3.chr3 C 0 C 0 e mm10.chr5 49271694 311 + 151834684 I e canFam3.chr3 3863735 394 - 91889043 I a score=83366.000000 s hg38.chr4_KI270790v1_alt 169271 88 + 220246 gtgaagccagAttttttttttttttttttttttttttttttttttttt--------------------------------ttgagacagagtctcactctgtcacccagggct---------------------------------ggagtgc s panTro4.chr4 21557042 74 + 193495092 gtgaagccaga-------------tttttttttttttttttttttttt--------------------------------ttgagacggagtctcgctctgtcaccca-ggct---------------------------------ggagtgc i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21734468 70 + 198332218 gtgaagccaga-----------------attttttttttttttttttt--------------------------------ttgagctggagtctcgctctgtcaccca-gcct---------------------------------ggagtgc i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20343973 74 - 85365473 gtgaagccagA-------------ttttcttttttttttttttttttt--------------------------------ttgagatggagtctcgctctgtcaccca-gcct---------------------------------ggagtgc i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16810502 88 + 184069350 gtgaagccagAtttttttttacttttatttttatttatttatttattt---------------------------------------------------------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgggagc-- i rheMac3.chr5 C 0 I 55 s macFas5.chr5 20860358 114 + 189454096 gtgaagccagatttttttttacttttatttttatttatttatttattt----atttg-ttttattttattttattttattttgagacagagttttgctctgccgccca-ggct---------------------------------ggagtgt i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16450490 118 + 178775436 Gtgaagccagatttttttttacttttatttttatttatttatttatttatttattta-ttttattttattttattttattttgagacagagttttgctctgccgccca-ggct---------------------------------ggagtgc i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19933739 117 - 48547382 gtgaagccagacttttttttacttttatttttatttatttgtttttgt--ttgtttgtttttgtttttgtttttgtttttttgagacagagttttgctctgccgtcca-ggct---------------------------------ggagtgc i chlSab2.chr27 C 0 C 0 e mm10.chr5 49271694 311 + 151834684 I e calJac3.chr3 21294171 0 - 190850796 C e canFam3.chr3 3863735 394 - 91889043 I a score=77767.000000 s hg38.chr4_KI270790v1_alt 169359 44 + 220246 agtggcatggtctcagctcactgcaagctccacctcccgggttc s panTro4.chr4 21557116 44 + 193495092 agtggcatgatctcagctcactgcaagctccacttcccgggttc i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21734538 44 + 198332218 agtggtgcaatctcggctcactgcaagctccacctgccgggttc i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20344047 44 - 85365473 agtggcgcaatctcggctcactgcaagctctacctccggggttc i nomLeu3.chr20 C 0 C 0 s macFas5.chr5 20860472 44 + 189454096 agtggcgcgatctcggctcactgcaagctccacctcccgggttc i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16450608 44 + 178775436 agtggcgcgatctcggctcactgcaagctccacctcccgggttc i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19933856 44 - 48547382 agtggcgcgatctcggctcactgcaagctccgcctcccgggttc i chlSab2.chr27 C 0 C 0 e mm10.chr5 49271694 311 + 151834684 I e rheMac3.chr5 16810590 55 + 184069350 I e calJac3.chr3 21294171 0 - 190850796 C e canFam3.chr3 3863735 394 - 91889043 I a score=204116.000000 s hg38.chr4_KI270790v1_alt 169403 98 + 220246 acgccattctcctgcctcagcctcccaaatagctgggactacaggcgcccgccaccacgcctggctaattttttgtatcttttagtagagatgaggtG s panTro4.chr4 21557160 97 + 193495092 acgccattctcctgcctcagcctcccgaatacctgggactacaggcgcctgccaccacgcctggctaa-tttttgtattttttagtagagatgaggtg i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21734582 96 + 198332218 acgccattctcctgcctcagccacccgaatagctgggactacaggtgcctgccaccacgcctggctaa-ttttt-tattttttagtagagatgaggtg i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20344091 97 - 85365473 acaccattctcctgcctcagcctcccgaatagctgggactacaggagcccgccaccacacctggctaattttttgtat-ttttagtagagacggggtG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16810645 97 + 184069350 acgcccttctccggcctcagcctcccgaatagctaggactacaggcgctggccaccacgcccggctaattttttgtat-ttttagtacagatggggtA i rheMac3.chr5 I 55 C 0 s macFas5.chr5 20860516 97 + 189454096 acgcccttctccggcctcagcctcccgaatagctaggactataggctctggccaccacgcccggctaattttttgtat-ttttagtacagatggggtA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16450652 97 + 178775436 acgcccttctccggcctcagcctcccgaatagctaggactacaggcgctggccaccactcctggctaattttttgtat-ttttagtacagatggggta i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19933900 97 - 48547382 acgccattctcctgcctcagcctcccgaaaagctaggactacaggcgccggccaccatgcccagctaattttttgtat-ttttagtacagatggggtA i chlSab2.chr27 C 0 C 0 e mm10.chr5 49271694 311 + 151834684 I e calJac3.chr3 21294171 0 - 190850796 C e canFam3.chr3 3863735 394 - 91889043 I a score=177171.000000 s hg38.chr4_KI270790v1_alt 169501 74 + 220246 GTGAAGCCAGATTTTAAGCACAGAC-CTATTGTTCTACAGATATCAGATATCAGGATCT-ATAGTATACTGTCTTG s panTro4.chr4 21557257 74 + 193495092 gtgaagccagattttAAGCACAGAC-CTATTGTTCTACAGATATCAGATATCAGGATCT-ATAGTGTACTGTCTTG i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21734678 74 + 198332218 gtgaagccagattttaagcacagac-CTATTGTTCTACAGATATCAGATATCAGGATCT-ATAGTATACTGTCTTG i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20344188 74 - 85365473 GTGAAGCCAGATTTTAAGCACAGAC-CTATTGTTCTACAGATATCAGATATCAGGATCT-GTAGTATAATGTCTTA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16810742 67 + 184069350 GTGAAGCCAGATTTGAAGCACAGAC-TTATTGTTCTA-------CAGACGTCAGGATCT-ATAGTGTACTGTCTTG i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20860613 67 + 189454096 GTGAAGCCAGATTTGAAGCACAGAC-TTATTGTTCTA-------CAGACGTCAGGATCT-ATAGTGTACTGTCTTG i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16450749 69 + 178775436 gTGAAGCCAGATTTGAAGCACAGACTTTATTGTTCTA-------CAGACGTCAGGATCTAATAGTGTACTGTCTTG i papAnu2.chr5 C 0 M 660 s chlSab2.chr27 19933997 67 - 48547382 GTGAAGCCAGATTTCAAGCACAGAC-TTGTTGTTCTA-------CAGACATCAGGATCT-ATAGTGTACTGTCTTG i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21294171 66 - 190850796 gtgaagccagatgtgaaGCACAAAC-CTATTGCTCTA-------CAGACATCAGGGTCT-GTAGCATATTGACAG- i calJac3.chr3 C 0 C 0 e mm10.chr5 49271694 311 + 151834684 I e canFam3.chr3 3863735 394 - 91889043 I a score=149621.000000 s hg38.chr4_KI270790v1_alt 169575 79 + 220246 CCAGTT-----------AAAAAACAATGCTTACTTTaaagaagatcatgtcgtttgtgggaacacagatgaagctggaggtcattatcct s panTro4.chr4 21557331 80 + 193495092 CCAGTT----------AAAAAAAAAATGCTTACTTTaaagaagatcatgtcttttgtgggaacacagatgaagctggaggtcattatcct i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21734752 78 + 198332218 CCAGTT------------AAAAAAAATGCTTACTTTaaagaagatcatgtcttttgtgggaacatggatgaagctggaggtcattatcct i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20344262 78 - 85365473 TCAGTT-----------AGAAGAAAATGCTTACTTTAaacaagatcatgtcttttgc-ggaacatggatgaagctggaggtcattatcct i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16810809 76 + 184069350 Ccagtt---------agaaaaaaaaatgc-----ttaaataagatcatgtcttttgtgggaacatggatgaagctggaggtcattatcct i rheMac3.chr5 C 0 I 50 s macFas5.chr5 20860680 76 + 189454096 CCAGTT---------AGAAAAAAAAATGC-----TTAaacaagatcatgtcttttgtgggaacatggatgaagctggaggtcattatcct i macFas5.chr5 C 0 C 0 s chlSab2.chr27 19934064 90 - 48547382 CCAGTTTaaaaaaaaaaaaaaaaaaaTGCTTACTTTAaacaagatcatgtcttttgtgggaacatggatgaagctggaggtcattatcct i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21294237 77 - 190850796 TCAGTT---------TAAAAATATAACGCTTACTTTAaacaaggtcgtgtcttttgtgggaacatggatgtagctggcagtcatta---- i calJac3.chr3 C 0 C 0 e mm10.chr5 49271694 311 + 151834684 I e canFam3.chr3 3863735 394 - 91889043 I e papAnu2.chr5 16450818 660 + 178775436 M a score=93846.000000 s hg38.chr4_KI270790v1_alt 169654 93 + 220246 tagcaaactaacgcaggaacagaaaaccaaatacctgtggtgcatacacattgtcccagttactcgagactgtacgtgttctcacttctaagt s panTro4.chr4 21557411 93 + 193495092 tagcaaactaatgcaggaacagaaaacaaaatacctgtggtgcatgcacattgtcccagttacttgagactgtacgtgttctcacttataagt i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21734830 93 + 198332218 tagcaaactaatgcaggaacagaaaaccaaatacctgtggtgcatgcacattgtcccagttactcgagactgtacgtgttctcacttataagt i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20344340 92 - 85365473 tagcaaact-atgcaggaacagaaaaccaaatacctgtggtgcatgcacgttgtcccagctactcgagactgtacgtgttctcacttataagt i nomLeu3.chr20 C 0 C 0 s macFas5.chr5 20860756 55 + 189454096 tagcaaactaaagcaggaacagaaaaccaaatacc--------------------------------------acatgttctcacttataaat i macFas5.chr5 C 0 C 0 s chlSab2.chr27 19934154 55 - 48547382 tagcaaactaaagcaggaacagaaaaccaaatacc--------------------------------------ccatgttctcacttataaat i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21294314 53 - 190850796 --gcaaactaacgaaggaacaggaaaccaaatgcc--------------------------------------acatgttctcacttataagt i calJac3.chr3 C 0 C 0 e mm10.chr5 49271694 311 + 151834684 I e rheMac3.chr5 16810885 50 + 184069350 I e canFam3.chr3 3863735 394 - 91889043 I e papAnu2.chr5 16450818 660 + 178775436 M a score=495912.000000 s hg38.chr4_KI270790v1_alt 169747 231 + 220246 gggagctaaatgataagaattcatgaacacgaagagggg---aacaacagatactggggcctgcttgagggaggagggtgggaggagggagaggagcagaaaaaataactattgggtactaggtttactatctggctgctgaaattccataaaacaaaccctagtgacactagtttacttatataacacatgtacctccaaacctaaaataaaagtt-aaaaa------aaaTAAATCTGT s panTro4.chr4 21557504 232 + 193495092 gggagctaaatgataagaattcatgaacacgaagagggg---aacaacagacactggggcctacttgacggaggagggttggaggaaggataggagcagaaaaaataactattgggtactaggcttactatctggctgatgaaattccacaaaacaaaccctagtgacactagtttacttatagaacacatgtacctccaaacctaaaataaaagttaaaaaa------aaAAAAATCTCT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21734923 224 + 198332218 gggagctaaatgataagaattcatgaacacgaagaaggg---aacaacagacactggggcctacttgagggaggagggttggaggagggataggagcagaaaaaataactattgggtactaggcttactacctggctgatgaaattccataaaacaaaccctagtgacactagtttacttatataacacatgtacctccaaacc-----taaaagtt-aaaaa------aaaAAA--CTCT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20344432 230 - 85365473 gggagctaaatgataagaattcatgaacacgaagagggg---aacaacagacact-gggcctacttgagggaggagggttggaggagggataggagcagaaaaaataactattgggtactaggcttactacctggctgatgaaattctgtaaaacaaaccctagtgacactagtttacttatataacacatgtacctccaaacctaaaataaaagtt-aaaaa------aaaTAAATATCT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16810935 229 + 184069350 gggagctaaatgatgagaattcatgaacacaaagaaggg---aacaactgatactggggcctatttgagggaggagggttggaggagggagaggagcagaaaatataactattgggtactaggcttactacctggctaatgaaattctgtaaaacaaaccctagtgacacaagtttacttatacaacacatgtacctccaaacctaaaataaaaatt-aaaaa------aa--aAATCTCG i rheMac3.chr5 I 50 C 0 s macFas5.chr5 20860811 229 + 189454096 gggagctaaatgatgagaattcatgaacacaaagaaggg---aacaactgatactggggcctatttgagggaggagggttggaggagggagaggagcagaaaatataactattgggtactaggcttactacctggctaatgaaattctgtaaaacaaaccctagtgacacaagtttacttatacaacacatgtacctccaaacctaaaataaaaatt-aaaaa------aa--aAATCTCG i macFas5.chr5 C 0 C 0 s chlSab2.chr27 19934209 230 - 48547382 gggagctaaatgatgagaattcatgaacacaaagagggg---aacaacagatactggggcctatttgagggaggagggttggaggagggagaggagcagaaaatataactattgggtaccaggcttactacctggctaatgaaattctgtaaaacaaaccctagtgacacaagtttacttatacaacacatgtacctccaaacccaaaataaaaatt-aaaaa------aa-TAAATCTCT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21294367 238 - 190850796 gggagctaaacaataaaaactcacgaaca--aagaagggaaaaacaacagacactggggcctactagagcggggaggatggaaagagggagaggagcagaaaaaataactattgggtactaggttggctacctgggtgatgaaattctgtaaaacaaaccccagtgacacaagtcttcttgtataacacctgtacctccaaaactaaaataaaagtt-aaaaaaTAAATAAATAAATCTCT i calJac3.chr3 C 0 C 0 e mm10.chr5 49271694 311 + 151834684 I e canFam3.chr3 3863735 394 - 91889043 I e papAnu2.chr5 16450818 660 + 178775436 M a score=26394.000000 s hg38.chr4_KI270790v1_alt 169978 12 + 220246 AAAGCACAT-AAA s panTro4.chr4 21557736 12 + 193495092 AAAGCACAC-AAA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21735147 12 + 198332218 AAAGCACAC-AAA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20344662 12 - 85365473 AAAGCACAC-AAA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16811164 12 + 184069350 AAAGCACAC-AGA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20861040 12 + 189454096 AAAGCACAC-AGA i macFas5.chr5 C 0 C 0 s chlSab2.chr27 19934439 12 - 48547382 AAAGCACAC-AGA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21294605 13 - 190850796 AAAGCACACAAAA i calJac3.chr3 C 0 C 0 s canFam3.chr3 3864129 12 - 91889043 AAAAGAGAA-ATA i canFam3.chr3 I 394 C 0 e mm10.chr5 49271694 311 + 151834684 I e papAnu2.chr5 16450818 660 + 178775436 M a score=168040.000000 s hg38.chr4_KI270790v1_alt 169990 59 + 220246 AAATGCTTACTTTAAAATAAAAATACTGCTATCATGTTAAATGAAATA-----AAAGGAAGCAG--- s panTro4.chr4 21557748 59 + 193495092 AAATGCTTACTTTAAAATAAAAATATTGCTCTCATGTTAAATGAAATA-----AAAGGAAGCAG--- i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21735159 59 + 198332218 AAATGCTTACTTTTAAATAAAAATATTGCTATCATGTTAAATGAAATA-----AAAGGAAGCAG--- i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20344674 59 - 85365473 AAATGCTTACTTTAAAATAAAAATATTGCTATCATGTTAAATGAAATA-----AAAGGATGCAG--- i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16811176 59 + 184069350 AAATGCTTACTTTAAAATAAAAATATTGCTACCATATTAAATGAAATA-----AAAGGAAGCAG--- i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20861052 59 + 189454096 AAATGCTTACTTTAAAATAAAAATATTGCTACCATATTAAATGAAATA-----AAAGGAAGCAG--- i macFas5.chr5 C 0 C 0 s chlSab2.chr27 19934451 59 - 48547382 AAATGCTTACTTTAAAATAAAAATATTGCTACCATATTAAATGAAATA-----AAAGGAAGCAG--- i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21294618 54 - 190850796 AAATGCTTA-----AAATAAAAATATTCCTATCAGGTTAAATGGAATA-----AAAGGAAGCAT--- i calJac3.chr3 C 0 I 139 s mm10.chr5 49272005 55 + 151834684 AAATGCTTACTTTTAAATGAAAATAT---TACCAGGCTGAATACAAT------AAAGCAAACAA--- i mm10.chr5 I 311 I 1 s canFam3.chr3 3864141 67 - 91889043 AAGTGCTTACCCTGAAATAAAAATTTCAGTGCCATGTTAAATGAACAAAAAACAAAGGAAGAAATAT i canFam3.chr3 C 0 C 0 e papAnu2.chr5 16450818 660 + 178775436 M a score=223571.000000 s hg38.chr4_KI270790v1_alt 170049 91 + 220246 CATGTACCTGAATTCTTATG-CGTTTTAGAAGCTGGAATGGACTGATTTCACATTTCCCATGACTACTTTTCTTATTCTAAATTCTGAGAGG s panTro4.chr4 21557807 91 + 193495092 CATGTACCTGAATTCTTATG-TGTTTTAGAAGCTCGAATGGACAGATTTCACATTTCCCATGACTACTTTTCTTATTCTAAACTCTGAGAGG i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21735218 91 + 198332218 CATGTACCTGAATTCTTATG-TGTTTTAGTAGCTGGAATGGACAGATTTCACATTTCCCATGACTACTTTTCTTATTCTAAACTCTGAGAGG i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20344733 91 - 85365473 CATGTACCTGAATTCTTATG-TGTTTTAGAAGCTGGAATGGACAGATTTCACATTTCCCATGACTACTTTTCTTATTCTAAACTCTGAGAGG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16811235 91 + 184069350 CATGTTCCTGAATTCTTGTG-TGTTTTAGAAGCTGGAATGGACAGATTTCACACTTCCCATGACTACTTTTCTTATTCTAAACTCTGAGAGT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20861111 91 + 189454096 CATGTTCCTGAATTCTTGTG-TGTTTTAGAAGCTGGAATGGACAGATTTCACACTTCCCATGACTACTTTTCTTATTCTAAACTCTGAGAGT i macFas5.chr5 C 0 C 0 s chlSab2.chr27 19934510 91 - 48547382 CAAGTTCCTAAATTCTTGCG-TGTTTTAGAAGCTGGAATGGACAGACTTCACACTTCCCATGACTACTTTTCTTATTCTAAACTCTGAGAGG i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21294811 91 - 190850796 CATGTACCTAAATTCTTATC-TATTTTCGAAGCTGCCATAGACAGATTGAACACTTCTGGTGACTACTTTTCTTGCTTTGAAATATGAGAGG i calJac3.chr3 I 139 C 0 s mm10.chr5 49272061 88 + 151834684 TAAAGGCCAAACTTCTTAAATTAGTTTAGGCTCCTGACAGGACTGAT--GACATTTCCAATGGCAGCTTGTCTTGCTCTTAACTTAGCAC-- i mm10.chr5 I 1 C 0 s canFam3.chr3 3864208 79 - 91889043 CATTCAACTAAATT----------TTTAGAGGCTTGAACAGGCTGACTTCATATTTCC-ATGACTGCTTTTCTTGTTCTGAACTGAGAGC-- i canFam3.chr3 C 0 C 0 e papAnu2.chr5 16450818 660 + 178775436 M a score=130568.000000 s hg38.chr4_KI270790v1_alt 170140 37 + 220246 GTAGTCTTTGTGCATTGGTCAAATTGATATACCTACT s panTro4.chr4 21557898 37 + 193495092 GTAGTCTTTGTGCATTGGTCAAATTTATATACCTACT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21735309 37 + 198332218 GTAGTCTTTGTGCACTGGTCAAATTTACATAGCCACT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20344824 37 - 85365473 GTAGTCTTTGTGCATTGGTCAAATTTATATAGCGACT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16811326 37 + 184069350 GCAGTCTTTGTGCACTGCTCAAATTTATATACCAACT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20861202 37 + 189454096 GCAGTCTTTGTGCACTGCTCAAATTTATATACCAACT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16451479 37 + 178775436 GCAGTCTTTGTGCACTGCTCAAATTTATATACCAACT i papAnu2.chr5 M 660 C 0 s chlSab2.chr27 19934601 37 - 48547382 GTAGTCTTTGTGCACTGCTCAAATTTATATACCAACT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21294902 37 - 190850796 GTAGTCTTTGCGCACTGGTCAAATTTATATACCGACT i calJac3.chr3 C 0 C 0 s mm10.chr5 49272149 29 + 151834684 ATAATCTTC--------TTCAAAGTTATATATCAACT i mm10.chr5 C 0 I 674 s canFam3.chr3 3864287 37 - 91889043 ACAGTCACTGTGTATTCTTTAAATTTATATACTGACT i canFam3.chr3 C 0 I 2 a score=15687.000000 s hg38.chr4_KI270790v1_alt 170177 4 + 220246 GAAA s panTro4.chr4 21557935 4 + 193495092 GAAA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21735346 4 + 198332218 GAAA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20344861 4 - 85365473 GAAA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16811363 4 + 184069350 GAAA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20861239 4 + 189454096 GAAA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16451516 4 + 178775436 GAaa i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19934638 4 - 48547382 GAAA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21294939 4 - 190850796 GAAA i calJac3.chr3 C 0 C 0 s canFam3.chr3 3864326 4 - 91889043 GAGA i canFam3.chr3 I 2 C 0 e mm10.chr5 49272178 674 + 151834684 I a score=418977.000000 s hg38.chr4_KI270790v1_alt 170181 121 + 220246 TTTT---AAAATTCA-TATTTCATAATAA-------------------AATTCTTCTCTA----CATCTTATTTCACTGGTAATACTTGAAGATTTAAAACATAAAATAATAAAATGTATTAAATATGGTTGTCTTTCCTAAAACTAG s panTro4.chr4 21557939 121 + 193495092 TTTT---AAAATTCA-TATTTCATAATAA-------------------AATTCTTCTCTA----CATCTTATTTCACTGGTAATACCTGAAGATTTAAAACATAAAATAATAAAATGTATTAAATACATTTGTCTTTCCTAAAACTAG i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21735350 121 + 198332218 TTTT---TAAATTCA-TATTTCATAATAA-------------------AATTCTTCTCTA----CATCTTATTTCACTGGTAATACTTGAAGatttaaaacataaaataatgaaatatattaaatatGTTTGTCTTTCCTAAAACTAG i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20344865 121 - 85365473 TTTT---TAAATTCA-TATTTCATAATAA-------------------AATTCTTCTCTA----TATCTTATTTCACTGGTAATACTTGAAGATTTAAAACATAAAATAATAAAATGTATTAAATATGTTTGTCTTTCCTAAAACTAG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16811367 121 + 184069350 GTTT---TAAATTCA-TATTTCATCATAA-------------------AATTATTCTCTC----CATCTTATTTCACTGGTAATACTTGAAGACTTAAAACATAAAATAATAAAATGTATTAAATGTGTTCGTCTTTCCTTAAAATAG i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20861243 121 + 189454096 GTTT---TAAATTCA-TATTTCATCATAA-------------------AATTATTCTCTC----CATCTTATTTCACTGGTAATACTTGAAGACTTAAAACATAAAATAATAAAATGTATTAAATGTGTTCGTCTTTCCTTAAAATAG i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16451520 121 + 178775436 gttt---taaattca-tatttcatCATAA-------------------AATTATTCTCTC----CATCTTATTTCACTGGTAATACTTGAAgacttaaaacataaaataataaaatgtattaaatgtgttCGTCTTTCCTTAAAATAG i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19934642 121 - 48547382 TTTT---TAAATTCA-TATTTCATAATAA-------------------AATTATTCTCTA----CATCTTATTTCACTGGTAATACTTGAAGACTTAAAACATAAAATAATAAAATGTATTAAATGTGTTTGTCTTTCCTTAAAATAG i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21294943 121 - 190850796 CTTT---TAAGTTCA-TATTTCATAATAA-------------------AATTCTTCTCTA----CATCTTATTTTATTGGTAATACTTGAAGACTTAAAACATAAAATAACAAAATGTATTAAATATTTTTGTCTTTCCTAAAAACAG i calJac3.chr3 C 0 C 0 s mm10.chr5 49272852 121 + 151834684 TTTT---CAAATTAG-TATAAGTTTATAA-------------------AATTCTCCTGCA----AATCTTATTTTAATGCTAATAATTTAACTTCTTAAACATAAAATGCTTACATATGCTACATAACTTTGGTTTTCTCAAACTTAA i mm10.chr5 I 674 I 206 s canFam3.chr3 3864330 138 - 91889043 -TTTCaataaattcattattttataataatttatttcataattattatGATGCTTCTCCAGATTAATCTTATTTTATTGGCAATGATTAAAGTCTTAAAACAAAAA----TGAATTATATTAAATAAATTTGGCTTTCCTAAA----- i canFam3.chr3 C 0 C 0 a score=379943.000000 s hg38.chr4_KI270790v1_alt 170302 111 + 220246 GACTTTAACATCTACGCAAATCTGTTATGCTTTTATAATATTTCATAAATAATTTAAAGAATGAGTAGGTTGTTAATATTGGCTTGTGAAGTAACTAATTTCTACATGTTA s panTro4.chr4 21558060 111 + 193495092 GACTTTAACATCTATGCAAATCTGTTATGCttttataatatttcataaataatttaaaGAATGAGTAGGTTGTTAATATTGGCTTGTGAAGTAACTAATTTCTACATGTTA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21735471 111 + 198332218 GACTTTAACATCTATGCAAATCTCTCATGCttttataatatttcataaataatttaaaGAATGAGTAGGTTGTTAATATTGGCTTGTGAAGTAACTAATTTCTACATGTTA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20344986 111 - 85365473 GACTTTAACATCTATGCAAATCTCTCATGCTTTTATAATATTTCATAAATAATTTAAAGAATGAGTAGGTTGTTAATATTGGCTTGTGAAGTAACTAATTTCTACATGTTA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16811488 110 + 184069350 GACTTTAACATCTATGCAAATCTCTCATGCttttataatatttcataaataatttaaaGAATGAGT-AGCTGTTAATATTGGCTTCTGAAGTAACTAATGTATACATGTTA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20861364 110 + 189454096 GACTTTAACATCTATGCAAATCTCTCATGCTTTTATAATATTTCATAAATAATTTAAAGAATGAGT-AGCTGTTAATATTGGCTTCTGAAGTAACTAATGTATACATGTTA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16451641 110 + 178775436 GACTTTAACATCTATGCAAATCTCTCAtgcttttataatatttcataaataatttaaagaatgaGT-AGCTGTTAATATTGGCTTCTGAAGTAACTAATGTATACATGTTA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19934763 111 - 48547382 GACTTTAACATCTATGCAAATCTCTTATGCTTTTATAATATTTCATAAATAACTTAAAGAATGAGTAAGTTGTTAATATTGGCTTCTGAAGTAACTAATGTATACATGTTA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21295064 111 - 190850796 GACTTTAATATCTATGCAAATCTCCTATGCCTTTATAATATTTCATAAATAATTTAAAGAATGAGTAGTTTGTCAATATTGACTTCTGAAGTAACTAATTTTTACctgtca i calJac3.chr3 C 0 I 291 s mm10.chr5 49273179 107 + 151834684 GATTTGAATATCTATACATACATCCCTTCCCTTT---ACATGTCAAAAATAATTTAATTAATCAGTCTGATTTTTAAAATGGGTTCTAGGGTAATTAATTT-TACTTTTCA i mm10.chr5 I 206 I 3 s canFam3.chr3 3864468 101 - 91889043 --TTTCTAAATCTGTTT--ACCTCTTA-ATCTTTATGATATTTCATAAG-AATT----AAATCAGCAGGTTCTTACTATTGACTTCTGAAATAGATAATTTCTACTTTTTA i canFam3.chr3 C 0 C 0 a score=177791.000000 s hg38.chr4_KI270790v1_alt 170413 78 + 220246 TTGTAGTTTAAAAATTTTTTTACTATACTTTATATCCTAGGAAAAAGCCAAGATTA----ATA-----GTTAATCTTATTT-TTGG---T-G s panTro4.chr4 21558171 79 + 193495092 TTGTAGTTTAAAATTTTTTTTACTATACTTTATATCCTAGGAAAAAGCCAAGATTA----ATA-----GTTAATCTTATTT-TTGG---TGG i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21735582 79 + 198332218 TTGTAGTTTAAAATTTTTTTTACTATACTTTATATCCTAGGAAAAAGCCAAGATTA----ATA-----GTTAATCTTATTT-TTGG---TGA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20345097 75 - 85365473 -TATAGTTTAAAATTTTTTTTACTATACTTTATATCCTAGGAAAAAGCCAAGATTA----ATA-----GTTAA---TATTT-TTGG---TGG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16811598 78 + 184069350 TTGTAGTGTAAACCATTTTTTACTATACTTCATATCCCACGAGAAAGCCAAGATTA----ATA-----GTTAATCTTATTT-TTGG---TG- i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20861474 78 + 189454096 TTGTAGTGTAAACCATTTTTTACTATACTTCATATCCCACGAGAAAGCCAAGATTA----ATA-----GTTAATCTTATTT-TTGG---TG- i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16451751 78 + 178775436 TTgtagtgtaaaatattttttactatacTTCATATCCCACGAGAAAGCCAAGATTA----ATA-----GTTAATCTTATTT-TTGG---TG- i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19934874 78 - 48547382 TTGTAGTGTAAAACATTTTTTACTATACTTCATATCCCAGGAAAAAGCCAAGATTA----GTA-----GTTAATATTATTT-TTGG---TG- i chlSab2.chr27 C 0 I 9 s mm10.chr5 49273289 79 + 151834684 CTTCTTTTTAAA----TTTTCATTAAACTTTATTTTCTAGG--AAAGCCAAAATGATAGTGTT-----ATTAATCTTTTTT-TCTGATCTG- i mm10.chr5 I 3 C 0 s canFam3.chr3 3864569 80 - 91889043 TTGCTGTTCTTAA----TTCTATGACATTTTATATCCCGGGAAATAGACATGATGG----GTACGGTTATTAATCTCATCCATTGA---TG- i canFam3.chr3 C 0 C 0 e calJac3.chr3 21295175 291 - 190850796 I a score=1036.000000 s hg38.chr4_KI270790v1_alt 170491 2 + 220246 AA s panTro4.chr4 21558250 2 + 193495092 AA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21735661 2 + 198332218 AA i ponAbe2.chr4 C 0 C 0 s rheMac3.chr5 16811676 2 + 184069350 GG i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20861552 2 + 189454096 GG i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16451829 2 + 178775436 GG i papAnu2.chr5 C 0 C 0 s mm10.chr5 49273368 1 + 151834684 -A i mm10.chr5 C 0 I 1 s canFam3.chr3 3864649 2 - 91889043 GA i canFam3.chr3 C 0 C 0 e chlSab2.chr27 19934952 9 - 48547382 I e calJac3.chr3 21295175 291 - 190850796 I e nomLeu3.chr20 20345172 0 - 85365473 C a score=1332.000000 s hg38.chr4_KI270790v1_alt 170493 2 + 220246 AA s panTro4.chr4 21558252 2 + 193495092 AA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21735663 2 + 198332218 AA i ponAbe2.chr4 C 0 C 0 s mm10.chr5 49273370 2 + 151834684 AG i mm10.chr5 I 1 C 0 s canFam3.chr3 3864651 2 - 91889043 AA i canFam3.chr3 C 0 C 0 e chlSab2.chr27 19934952 9 - 48547382 I e macFas5.chr5 20861554 0 + 189454096 C e rheMac3.chr5 16811678 0 + 184069350 C e calJac3.chr3 21295175 291 - 190850796 I e papAnu2.chr5 16451831 0 + 178775436 C e nomLeu3.chr20 20345172 0 - 85365473 C a score=6735.000000 s hg38.chr4_KI270790v1_alt 170495 22 + 220246 AAACAAACTTTTT--AAAAttatt s panTro4.chr4 21558254 22 + 193495092 AAACAAACTTTTT--AAAAttatt i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21735665 24 + 198332218 AAACCAAACTTTTAAAAAAttatt i ponAbe2.chr4 C 0 C 0 s mm10.chr5 49273372 22 + 151834684 CAATAAACTTTCT--TAAATTACT i mm10.chr5 C 0 C 0 e chlSab2.chr27 19934952 9 - 48547382 I e macFas5.chr5 20861554 0 + 189454096 C e rheMac3.chr5 16811678 0 + 184069350 C e calJac3.chr3 21295175 291 - 190850796 I e canFam3.chr3 3864653 0 - 91889043 C e papAnu2.chr5 16451831 0 + 178775436 C e nomLeu3.chr20 20345172 0 - 85365473 C a score=59765.000000 s hg38.chr4_KI270790v1_alt 170517 223 + 220246 attatactttaagttctagggtacatgtgcacaacgtgcaggtttgttacatatgtatacatgtgccatgttggtgtgctgcacccattaactcgtcatttacattaggtatatctgctaatgctatccctcccctctcccccgaccccatgacaggccccagtgtgtgatgttccccaccctgtgtccactatgttctcactcataggtgggaattgaacaa s panTro4.chr4 21558276 223 + 193495092 attatactttaagtactagggtacatgtgcacaacgtgcaggtttgttacatatgtatacatgtgccatgttggtgtgctgcacccattaactcatcatttacattaggtatatctcctaatgctatccctcccctctcccctgaccccatgacaggccccagtgtgtgatgttccccaccctgtgtccactatgttctcaCTCAAAGGTGGGAATTGAACAA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21735689 223 + 198332218 attatactttaagttctagggtacatgtgcacaacatgcaggtttgttacctatgtatacatgtgccatgttggtgtgctgcacccattaactcatcatttacattaggtatatctcctaatgctatccctcccatctccccccaccccatgacaggccctggtgtgtgatgttccccaccctgtgtccactatgttctcactcataggtgggaattgaacaa i ponAbe2.chr4 C 0 C 0 e mm10.chr5 49273394 0 + 151834684 C e chlSab2.chr27 19934952 9 - 48547382 I e macFas5.chr5 20861554 0 + 189454096 C e rheMac3.chr5 16811678 0 + 184069350 C e calJac3.chr3 21295175 291 - 190850796 I e canFam3.chr3 3864653 0 - 91889043 C e papAnu2.chr5 16451831 0 + 178775436 C e nomLeu3.chr20 20345172 0 - 85365473 C a score=546.000000 s hg38.chr4_KI270790v1_alt 170740 1 + 220246 t s panTro4.chr4 21558499 1 + 193495092 T i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21735912 1 + 198332218 t i ponAbe2.chr4 C 0 C 0 s calJac3.chr3 21295466 1 - 190850796 T i calJac3.chr3 I 291 C 0 e mm10.chr5 49273394 0 + 151834684 C e chlSab2.chr27 19934952 9 - 48547382 I e macFas5.chr5 20861554 0 + 189454096 C e rheMac3.chr5 16811678 0 + 184069350 C e canFam3.chr3 3864653 0 - 91889043 C e papAnu2.chr5 16451831 0 + 178775436 C e nomLeu3.chr20 20345172 0 - 85365473 C a score=1694.000000 s hg38.chr4_KI270790v1_alt 170741 1 + 220246 a s panTro4.chr4 21558500 1 + 193495092 A i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21735913 1 + 198332218 a i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20345172 1 - 85365473 A i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16811678 1 + 184069350 A i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20861554 1 + 189454096 A i macFas5.chr5 C 0 C 0 s calJac3.chr3 21295467 1 - 190850796 G i calJac3.chr3 C 0 C 0 s canFam3.chr3 3864653 1 - 91889043 A i canFam3.chr3 C 0 C 0 e mm10.chr5 49273394 0 + 151834684 C e chlSab2.chr27 19934952 9 - 48547382 I e papAnu2.chr5 16451831 0 + 178775436 C a score=20522.000000 s hg38.chr4_KI270790v1_alt 170742 8 + 220246 aaaacaAA s panTro4.chr4 21558501 8 + 193495092 AAAACACA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21735914 8 + 198332218 aaaacaAA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20345173 8 - 85365473 AAAACAAA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16811679 8 + 184069350 AAAAAAAA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20861555 8 + 189454096 AAAAAAAA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16451831 8 + 178775436 aaaaaaaa i papAnu2.chr5 C 0 C 0 s calJac3.chr3 21295468 8 - 190850796 AAAAAAAA i calJac3.chr3 C 0 C 0 s canFam3.chr3 3864654 8 - 91889043 AAAAAAAA i canFam3.chr3 C 0 C 0 e mm10.chr5 49273394 0 + 151834684 C e chlSab2.chr27 19934952 9 - 48547382 I a score=27822.000000 s hg38.chr4_KI270790v1_alt 170750 11 + 220246 -----CTTAATTACAA s panTro4.chr4 21558509 11 + 193495092 -----CTTAATTACAA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21735922 11 + 198332218 -----CTTAATTACAA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20345181 11 - 85365473 -----CTTAATTATAA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16811687 11 + 184069350 -----CTTAATTACAA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20861563 11 + 189454096 -----CTTAATTACAA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16451839 11 + 178775436 -----CTTAATtacaa i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19934961 11 - 48547382 -----CTTAATTACAA i chlSab2.chr27 I 9 C 0 s calJac3.chr3 21295476 8 - 190850796 --------AATTGCAA i calJac3.chr3 C 0 I 1 s canFam3.chr3 3864662 16 - 91889043 CCTGTATTGACTATTG i canFam3.chr3 C 0 C 0 e mm10.chr5 49273394 0 + 151834684 C a score=434570.000000 s hg38.chr4_KI270790v1_alt 170761 123 + 220246 ATTTTTTGAAAATTAAGGAGTTTAGACTCAAAAAGTGTTAGCAAGAATACATATTGCACATATTTGTATAATATACAAGTCATCTGACATTTTTGGGTAGG-AAATATCTTTTGGTAGGAGAGT s panTro4.chr4 21558520 123 + 193495092 GTTTTTTGAAAATTAAGGAGTTTAGACTCAAAAAGTGTTAGCAAGAATATATATTGCACATATTTGTATAATATACAAGTCATCTGACATTTTTGGGTAGG-AAATATCTTTTGGTAGGAGAGT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21735933 123 + 198332218 ATTTTTTGAAAATTAAGGAGTTTAGACTCAAAAAGTGTTAGCAAGAATATATATTGCACATACTTGTGCAATATACAAGTCATCTGACATTTTTGGGTAGG-AAATATATTTTGGTAGGAGAGT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20345192 123 - 85365473 ATTTTTTGAAAATTAAGGAGTTTAGACTCAAAAAGTGTTAGCAAGAATATATATTGCACATATTTGTGCAATATACAAGTCATCTGACATTTCTGGGTAGG-AAATAACTTTTGGTAGGAGAGT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16811698 124 + 184069350 ATTTTTTGAAAATTAAGGAGTTTAGACTCAAAAAGTGTTAGCAAGAATATATATTGCACATATTTGTGCAATATACAAGTCATCTGACATTTTTGGGTAGGAAAATATCTTTTGGCAGGAGAGT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20861574 124 + 189454096 ATTTTTTGAAAATTAAGGAGTTTAGACTCAAAAAGTGTTAGCAAGAATATATATTGCACATATTTGTGCAATATACAAGTCATCTGACATTTTTGGGTAGGAAAATATCTTTTGGCAGGAGAGT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16451850 124 + 178775436 attttttgaaaattaaggaGTTTAGACTCAAAAAGTGTTAGCAAGAATATATATTGCACATATTTGTGCAATATACAAGTCATCTGACATTTTTGGGTAGGAAAATATCTTTTGGCAGGAGAGT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19934972 124 - 48547382 ATTTTTTGAAAATTAAGGAGTTTAGACTCAAAAAGTGTTAGCAAGAATATACATTGCACATATTTGTGCAATATACAAGTCATCTGACATTTTTGGGTAGGAAAATATCTTTTGACAGGAGAGT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21295485 120 - 190850796 TTTTTTTGAAAATTAAGGGCTTCAAACTCAAGAACTGTTAGCAAGAAT--ATATTGCACATATTTGAGCAATATACATGTTATCTGACATTTTT-AGTAGA-AAATATCTTTTGGTGGGAGAAT i calJac3.chr3 I 1 C 0 s mm10.chr5 49273394 122 + 151834684 ATATTAGAAAGGTTAAGAGCTTTAGTCTTAGAAA-TGTTAGCTAAAATATCTGTTACATATGTGACAGCAATATATAAATTATCTCATAATTTTATACAAA-AGGTCATTTTTTATAAAAGAGA i mm10.chr5 C 0 C 0 s canFam3.chr3 3864678 121 - 91889043 ATTTTTAGAAATGTAAGGATTTTACACTCATGAGTTTTTAGCAAAAACATATGTTGCATGTAGCTAAGCAATATATAAGTTATCCAAAAATTTTAGGTAGG-TGAGGATTTTTGGTGACAGT-- i canFam3.chr3 C 0 I 185 a score=829302.000000 s hg38.chr4_KI270790v1_alt 170884 268 + 220246 AATAAAGCATAATTAAGTAAAACCCTTTAAGTATATTAATGTATAATTTTATCATTTATGAAGGAAGTCTTTGAGTCATATGTTCTACCTAATTTTGAACATTTTAAAAT----CAATAGAAAGTGAACACATTTTAACATTTTCTAAGGAATTTAAAATAATTGCATAATGTTTTACATAATACACTACAC----CGATTTATAAGTATCTGAAACAGGACTTAGTGCTGTttgaatgagtactgat-tccagccactgtccttacaaatgctggc s panTro4.chr4 21558643 267 + 193495092 AATAAAGCATAATTAAGTAAAACCCTTTAAGTATATTAATGTATAATTTTATCATTTATGAAGGAAGTCTTTGAGTCATATGTTCTACCTAATTTTGAACATTTTAAAAT----CAATAGAAAGTGAACATATTTTAACATTTTCTAAGGAA-TTAAAATAATTGCATAATGTTTTACATAATACACTACAC----CGATTTATAAGTATCTGAAACAGGACTTAGTGCTATttgaatgagtactgat-tccagccactgtccttacaaatgctggc i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21736056 267 + 198332218 ATTAAAGCATAATTAAGTAAAACCCTTTAAGtatattaatttataattttatCATTTATGAAGGAATTCTTTGAGTCATAT-TTCTACCTAATTTCGAACATTTTAAAAT----CAATAGAAAGTGAACACATTTTAACATTTTCTAAGGAATTTAAAATAATTGCATAATGTTTTACATAATACACTACAC----CGATTTATAAGTATCTGAAACAGGACTTAGTGCTATttgagtgagtactgat-tccagccactgtccttacaaatgctggc i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20345315 267 - 85365473 ATT-AAGCATAATTAAGTAAAACCCTTTAAGTATATTAATTTACAATTTTATCATTTATGAAGGAGGTCTTTGAGTCATATGTTCTACCTAATTTTGAGCATTTTAAAAT----CAGTAGAAAGTGAACACATTTTAACATTTTCTAAGGAATTTAAAACAACTGCATAATGTTTTACATAATACACTACAG----TGATTTATAAGTATCCAAAACAGGACTTAGTGCTATTTGAATGAGTACTGAT-TCCGGCCACTGTCCTTACAAATGCTGGC i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16811822 248 + 184069350 ATTAAAGCATAATTAAGTAAAACCCTTTAAGtatattaatttataatattatCATTTATGAAGGAGGTCTTTGAGTCATATGTTTTACCTAATTTGGAACATTTTAAAAT----CAATAGAAAGTGAACACATTTTAACATTTTCTAAGGAATTTAAA--------------------ATAATACACTACAC----TGATATATAAGTATCCGAAATAGGACTTAGTGCTATTTGAATGAGTACTGAT-TCCAGTCACTGTCCTTACAAATGCTGGC i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20861698 248 + 189454096 ATTAAAGCATAATTAAGTAAAACCCTTTAAGTATATTAATTTATAATATTATCATTTATGAAGGAGGTCTTTGAGTCATATGTTTTACCTAATTTGGAACATTTTAAAAT----CAATAGAAAGTGAACACATTTTAACATTTTCTAAGGAATTTAAA--------------------ATAATACACTACAC----TGATATATAAGTATCCGAAATAGGACTTAGTGCTATTTGAATGAGTACTGAT-TCCAGTCACTGTCCTTACAAATGCTGGC i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16451974 248 + 178775436 ATTAAAGCATAATTAAGTAAAACCCTTTaagtatattaatttataatattatcATTTATGAAGGAGGTCTTTGAGTCATATGTTTTACCTAATttggaacattttaaaat----caatagaaagtgaacacattttaacattttctaaggaatttaaa--------------------ataatacactaCAC----TGATACATAAGTATCCGAAATAGGACTTAGTGCTATTTGAATGAGTACTGAT-TCCAGTCACTGTCCTTACAAATGCTGGC i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19935096 248 - 48547382 ATTAAAGCATAATTAAGTAAAACCCTTTAAGTATATTAATTTATAATATTATCATTTATGAAGGAGGTCTTTGAGTCATATGTTTTACCTAATTTGGAACATTTTAAAAT----CAATAGAAAGTGAACACATTTTAACATTTTCTAAGGAATTTAAA--------------------ATAATACACTACAC----TGATATATAAGTATCCGAAATAGGACTTAGTGCTATTTGAATGAGTACTGAT-TCCAGTCACTGTTCTTACAAATGCTGGC i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21295605 240 - 190850796 ATT-AAGTATAATTAAGTAAAACCCTTTAA-----------------------------GAAGAAGGTCTTTGAGTCATATGTTCTACCTAATTTTGAACATCTTAAAAT----CAATACAAAGTGAACATATTTTAACATTTTCTAAGGAATTTAAA-CAATTGCAAAAGGTTTTACATAATATGCTACTTTACATGGTTTATCAGTATCTGAAACAGGAC-TAGTACTATTTGAATGAGTGCTGAT-TCCAGTCACTGCCCTTACAAATGCTGGC i calJac3.chr3 C 0 C 0 s mm10.chr5 49273516 245 + 151834684 ATGAAATTATAACTC--TCAAACCATTTAAGT-------TGTA-AATTTTGCCATGTGTGAAGGATACATTTCTGTGAGATAGTATGTCGGCTTTCCATCATTTTAAATTGGTACCATAGAA-------ACAGTTTGTCCTTGTCTGAGGACATAAAAACAATGATAT----------AAAATTAGTTAAAC----TACTTTGTATTGATTTGAAACATGGTTTAAGTCTTTGTGAAGGCATACAGAT-TCTAAAATCTGTCTTTAAAAATGCTGAT i mm10.chr5 C 0 I 496 s canFam3.chr3 3864984 267 - 91889043 aaTAAAGCATCTTTGAGTATAATCATTTGAGTACACAGATTTTAAGCTATATCATTTTTGAAGGAGATCTTTAAGTTAGCTATTCTATTTACTTTTTGAAAATTTTAAAT----TGATACAAACCGGGCACACTTTGACCTTTTCTGAGGACTCCAAAACAAATGAATGATGTTAGCTGCAAAGCTTGACA-----TGATTTATCAGTATCC-AAACAGGGCTTAACACCACTTGAATGAGTACTGATCCCCAACTACCGTCCTTAAAAATGCTGAC i canFam3.chr3 I 185 C 0 a score=1068457.000000 s hg38.chr4_KI270790v1_alt 171152 336 + 220246 ttgtaaaagtactcagcagaaccttgaattgggatcacttta-tttttccaatgaggaaactgatatcatgggg----ggaatataaacttgtccaaggtcacctgctaagacgtgatggtgcaaagataaaagttcaagtcattttctttgccaggtctaagtgtttctaccccaccaagccaccacctGAG----GCACTTGTC-ACAATGTAAGGTTGTGAGAGCAATGTGCTTGTGGAATGGGAGAGTAAT-AATCAGTACGTGGaccaattagctgttatgaccttagtaaaatcacttgaataactcagg-tccagttgtctcttccgaaaataaagaaagg s panTro4.chr4 21558910 336 + 193495092 ttgtaaaagtactcagcggaaccttgaattgggatcacttta-tttttccaaggaggaaactgatatcatgggg----ggaatataaacttgtccaaggtcacctgctaagacgtgatggtgctaagataaaagttcaggtcattttctttgccaggtctaagtgtttctaccccaccaagccaccacctGAG----GCACCTGTC-ACAATGTAAGGTTGTGAGAACAACGTGCTTGTGGAATGGGAGAGTAAT-AATCAGTACCTGGaccaattagctgttatgaccttggtaaaatcacttgaataactcagg-tccagttgtctcttccgaaaataaagaaagg i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21736323 336 + 198332218 ttgtaaaagttctcagtggaaccttgaattgggatcacttga-tttttccaatgaggcaactgatatcatgggg----ggaatataaacttgtccaaggtcacctgctaagacgtgatggtgctaagataaaagttcaggtcattttctttgccaggtctaagtgtttctaccccaccaagccaccacctGAG----GCACTTGTC-ACAATGTAAGGTTGTGAGAACAATGTGCTTGTGGAATGGGAGAGTAAT-AAACAGTACATGGaccaattagctgttatgaccttggtaaaatcacttgaataactcagg-tccagttgtctcttctgaaaataaagaaagc i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20345582 336 - 85365473 TTGTGAAAGTACTCAGTGGCACCCTGAATTAGGATCGCTTTATtttttctgatgaggaaactgatatcac-ggg----ggaatataaacttgtccaaggtcacctgctaagacgtgatggtgttaagataaaagtcccgatcattttgtttgccaggtctaagtgtttctaccccaccaagccaccacctGAG----GCACTTGTC-ACAATGTCAGGTTGTGAGAACAATGTGCTTGTGAAATGGGAGAGTAAT-AATCAGTACGTGGaccaattagctgttacgaccttggtaaaatcacttgagttactcagg-tccagttgtctcttctgaaaagaaaaaaagc i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16812070 337 + 184069350 TTGTAAAAGTACTCAGTGGCACCTTGAATTGGGATTGCTTTATtttttccgatgaggaaactggtatcatgggg----ggaatatgaacttgtccaaggtcacctgctaagatgtgatggtgctaagataaaagttcagatcattttgtctgccaagtctaagtgtttctaccccaccaagccaccacctGAG----GCACTTTTC-ACAATGTAAGGTTGTGAGAATAATGTGCTTGTGGAATGGGAGAGTAAT-AATCAGTACATGAACCAATTAGCTGTTATAATCTTGGTAATATCACTTGAATAACTAAGG-TTCAATTGTCTCTTCTGAAAATAAAGAAAGC i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20861946 337 + 189454096 TTGTAAAAGTACTCAGTGGCACCTTGAATTGGGATTGCTTTATtttttccgatgaggaaactggtatcatgggg----ggaatatgaacttgtccaaggtcacctgctaagatgtgatggtgctaagataaaagttcagatcattttgtctgccaagtctaagtgtttctaccccaccaagccaccacctGAG----GCACTTTTC-ACAATGTAAGGTTGTGAGAATAATGTGCTTGTGGAATGGGAGAGTAAT-AATCAGTACATGAACCAATTAGCTGTTATAATCTTGGTAATATCACTTGAATAACTCAGG-TTCAATTGTCTCTTCTGAAAATAAAGAAAGC i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16452222 337 + 178775436 TTGTAAAAGTACTCAGTGGCACCTTGAATTgggattgctttattttttccgaTAAGGAAACTGGTATCATGAGG----GGAATAtgaacttgtccaaggtcacctgCTAAGATGTGATGGTGCTAAGATGAAAGTTCAGATCATTTTGTCTGCCAAGTCTAAGTGTTTCTACCCCACCAAGCCACCACCTGAG----GCACTTTTC-GCAATGTAAGGTTGTGAGAATAATGTGCTTGTGGAATGGGAGAGTAAT-AATCAGTACATGAACCAATTAGCTGTTATAACCTTGGTAATATCACTTGAATAACTCAGG-TTCAATCGTCtcttctgaaaataaagaaaac i papAnu2.chr5 C 0 I 337 s chlSab2.chr27 19935344 337 - 48547382 TTGTAAAAGTACTCAGTGGCACCTTGAATTGGGATTGCTTTATtttttctgatgaggaaactggtatcatgggg----ggaatatgaacttgtccaaggtcacctgctaagatgtgatggtgcgaagataaaagttcagatcattttgtctgccaagtctaagtgtttctaccccaccaagccaccacctGAG----GCGCTTTTC-ACAATGTAAGGTTGTGAGAATAATGTGCTTGTGGAATGGGAGAGTAAT-AATCAGTACACGAACCAATTAGGTGTTATAACCTTGGTAATATCACTTGAATAACTCAGG-TTCAGTTGTCTCTTCTGAAAATAAAGAAAGC i chlSab2.chr27 C 0 I 336 s calJac3.chr3 21295845 325 - 190850796 TTGTAAAAATACTTAATGGCACCTTGAATCAGTATCActtta-tttttgtgaagaggaaattgatat---gggg----ggaatataaacttgtccaaggccacctgctaagatgtgacggtgctaagataaaagttcaggtcattttgtctaccaagtctaagtgttt------aaccaAACCACCACCTGAG----GCACTTGTC-ACAATGTAAGGTTGTGAGAATAACGTGTTTCTGGAATAGCAGAGTCAT-AATCAGTATGTAGATT-attcgctgttatgacctt-gtaaaatcacttgagtaacttggg-ttcaattgtctcttctgaaaataaagaaggc i calJac3.chr3 C 0 I 1 s mm10.chr5 49274257 264 + 151834684 TTGCAAATGTACTTGGTGGTCATTTGAGCAGGGTTCAGTTCC-TGTGTCCCA-------------ATCTTCAGA----AGGCTACAAGCCTGCTCAAGCCCACCTAGTACGGAAAGACTATGCTAAGATTTGAGCTCAGGCA---TCAATTGCCAAGTCCAGGTATTCCTATGAGAGCA--CCAATGTCTTAGGAATGAACTTAACAACAATGTAAGTTTA----------------GTGCAATGAGAGCAT--------------TAGACTA--TTGCTGTTACAACATAAGAAAAGTCACTTAAGGAA-----------------------------AAAAAAAGT i mm10.chr5 I 496 I 1 s canFam3.chr3 3865251 321 - 91889043 TTCCAAAAGTCCCTGCTGGCAGCTGGAATCACATTTGCTTGTTtttttctgaagaggaaacaagtatcataggatatctgactgtaaacttgcccaaggtgccctactaagatgag-tagtgctaagacc--ggttcaggacttcttggctgcgaagaccaggcatttctccC------------------AG----GCACTTATT-ACAGTGTAAGGTTGTGAAAACAATGTGTTTCTGTAATGGTGGTGTAATGGACTAGTAACAAGACTAACTAG-TCTCATGACCTTGTTAAAATCACTCCAGAAACTCAGACCTCCATAGCCTCTTCCAAAAAGAAAGAAAAA i canFam3.chr3 C 0 C 0 a score=4095.000000 s hg38.chr4_KI270790v1_alt 171488 1 + 220246 a s panTro4.chr4 21559246 1 + 193495092 a i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21736659 1 + 198332218 a i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20345918 1 - 85365473 a i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16812407 1 + 184069350 A i rheMac3.chr5 C 0 I 340 s macFas5.chr5 20862283 1 + 189454096 A i macFas5.chr5 C 0 I 341 s papAnu2.chr5 16452896 1 + 178775436 a i papAnu2.chr5 I 337 C 0 s chlSab2.chr27 19936017 1 - 48547382 A i chlSab2.chr27 I 336 C 0 s mm10.chr5 49274522 1 + 151834684 A i mm10.chr5 I 1 C 0 s canFam3.chr3 3865572 1 - 91889043 A i canFam3.chr3 C 0 I 187 e calJac3.chr3 21296170 1 - 190850796 I a score=2517886.000000 s hg38.chr4_KI270790v1_alt 171489 642 + 220246 gaccaaatgatttttaagatccattgagatgtaacgtgtctatgatccAAGAATATATTCTGACAC--AAAAA--ATTCGTTTATATGAGTGACATGATAAACACAATGTTGTCTATATTGTTGCCATTGTGTTAAGGACTTGTACCACTTTGAGTGCAAACAAGTTTCTCAACCTTCTAAGTTCAGGGATTGTGCTTTTACTTGAAGATAGGCTAGGAGGGCATCATTGGAAG--GAACATTTGCATGTATTTGGGAACATACCCAGCACTTGGCTGTATAGTTTCCCTTGGGGGAATTCAGTAGACACAGCATAAAACTGATCTTTAAAGTTCTAAAAGCTTTTT-------ATAGAACTGGCTTCCTAGTTCTTTAAAGCCTTTTGACTTTTGTTTGGCTCAGGGAATTACAAGATGATTAGGAAATTCTTTTTGTATCTCCCATCATAAAACAGGCTCTATGTATCTTAACA---TGTTATAGAACAGGAATGTGACTGATTTGGTAGGCATTAAGTCTCTTATCCTAATCTGGTGGTCTTGAAAAATAA--AAATCTTCCCATTGTAGAGGTAATAATATTGAGCTCGGAAGATTTACTACTTTCTCCA---------------GGAGAAGAAAACTGCAGCTAGAGAACAGATCAACTTAAAGCCTGGT s panTro4.chr4 21559247 642 + 193495092 gaccaaataatttttaagatccattaagatgtaacgtgtctatgatccAAGAACATATTCTGACAC--AAAAA--ATTCGTTTATATGAGTGACATGATAAACACAATGTTGTCTATATTGTTGCCATTGTGTTAAGGACTTGTACCACTTTGAGTGCAAACAAGTTTCTCAACCTTCTAAGTTCAGGGATTGTGCTTTTACTTGAAGATAGGCTAGGAGGGCATCATTGGAAG--GAACATTTGCATGTATTTGGGAACATGCCCAGCACTTGGCTGTATAGTTTCCCTTGGGAGAATTCAGTAGACACAGCATAAAACTGATCTTTAAAGTTCTAAAAGCTTTTT-------ATAGAACTGGCTTCCTAGTTCTTTAAAGCCTTTTGACTTTTGTTTGGCTCAGGGAATTACAAGATGATTAGGAAATTCTTTTTGTATCTCCCATCATAAAACAGGCTCTATGTATCTTAACA---TGTTATAGAACAGGAATGTGACTGATTTGGTAGGCATTAAGTCTCTTATCCTAATCTGGTGGTCTTGAAAAATAA--AAATCTTCCCATTGTAGAGGTAATAATATTGAGCTCGGAAGATTTACTACTTTCTCCA---------------GGAGAAGAAAACTGCAGCTAGAGAACAGATCAACTTAAAGCCTGGT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21736660 641 + 198332218 gaccaaatgatttttaagatccattgagatgtaacgtgtctatgatccAAGAATATATTCTGACAC--AAAAA--ATTC-TTTATATAAGTGACATGATAAACATAATGTTGTCTATATTGTTGCCATTGTGTTAAGGACTTGTACCACTTTGAGTGCAAACAAGCTTCTCAACCTTCTAAGTTCAGGGATTGTGCTTTTACTCGAAGACAGGCTAGGAGGGCATCATTGGAAG--GAACATTTGCATGTATTTGGGAACATGCCCAGCACTTGGCTGTATAGTTTCCCTTGGGGGAATTCAGTAGATACAGCATAAAACTGATCTTTAAAGTTCTAAAAGCTTTTT-------ATAGAACTGGCTTCCTAGTTCTTTAAAGCCTTTTGACTTTTGTTTGGCTCAGGGAATTACAAGATGATTAGGAAATTCTTTTTGTATCTCCCATCATAAAACAGGCTCTATGTATCTTAACA---TGTTATAGAACAGGAACATGACTGATTTGGCAGCCATTAAGTCTCTTATCCTAATCTGGTGATCTTGCAAAATAA--AAATCTTCCCATTGTATAGGTAATAATATTGAGCCTGGAAGATATACTACTTTCTCCA---------------GGAGAAGAAAACTGCAGCTAGAGAACAGATCAACTTAAAGCCTGGT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20345919 641 - 85365473 gaccaaatgatttttaagatccattgagatgtaacgtgtctatgatccAAGAATATATTCTGACAC--AAAAA--ATTC-TTTATATGAGTGACATGATAAACACAATGTTGTCTATATTGTTGCCATTGTGTTAAGGACTTGTACCACTTTGAGTGCAAACAAGTTTTTCAACCTTCTAAGTTCAGGGATTGTGCTTTTACTTGAAGATAGGCTAGGAGGGCATCATTGGAAG--GAACATTTGCATGTATTTGGGAACACGCCCAGCACTTGGCTGTATAGTTTCCCTTGGGGGAATTCAGTAGACACAGCATAAAACTGATCTTTAAAGTTCTAAAGGCTTTTT-------ATAGAACTGGCTTCCTAGTTCTTTAAAGCCTTTTGACTTTTGTTTGGCTCAGGGAATTACAAGATGATTAGGAAATTCTTTTTGTATCTCCCATCATAAAACAGGCTCTATGTATCTTAACA---TGTTATAGAACAGGAACGTGACTGATTTGGCAGGCATTAAGTCTCTTACCCTAATCTGGTGATCTTGCAAAATAG--AAATCTTCCCATTGTAGAGGTAATAATATTGAGCCCGGAAGATTTACTACTTTCTCCA---------------GGAGAAGAAAACTGCAGCTAGAGAACAGATCAACTTAAAGCCTGGT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16812748 642 + 184069350 gaccaaatgatttttaagatccattgagatgtaacatgtctatgatccAAGAATACATTCTGACGC-AAAAAA--AATC-TTTACATGAGTGACATGATAAACATAATGTTGTCTATATTGTTGCCGTTGTTTTCAGGACTTGTACCACTTTGAGTGCAAAAGAGCTTCTCAGCCTTCCAAGTTCAGGGTTCGTGCTTTTACTTGAAGACAGGCTAGGAGGGCATCATTGGAGG--GAACATTTGCATGGATTTGGGAACATGCCCAGCCCTTGGCTATATAGTTTCCCTTGGGGGAATTCAGTAGACACAGCATAAAACTGATCTTTAAAGTTCTAAAAGCTTTTT-------ATAGAACTGGCTTCCTAGCTCTTCAAAGCCTTTTGACTTTTGTTTGGCTCAGGGAATTACAAGATGATTACGAAATTCTTTTTGTATCTCTTATCATAAAACAGGCTCTATGTATCTTAACA---TATTATAGAACAGGAACGTGACTGATTTGGCAGGCATTGAGTCACTTATCCTAATCTGGTGACCTTGCAAAATAA--AAATCTTCCCATTGTAGAGGTAATGATATTGAGCCCAGAAAATTTACTAATTTCTCCA---------------GGAGAAGAAAACTGCAGCTAGAGAACAGATCAACTTAAAGCCCGGT i rheMac3.chr5 I 340 C 0 s macFas5.chr5 20862625 643 + 189454096 GACCAAATGATTTTTAAGATCCATTGAGATGTAACATGTCTATGATCCAAGAATACATTCTGACGCAAAAAAA--AATC-TTTACATGAGTGACATGATAAACATAATGTTGTCTATATTGTTGCCGTTGTTTTCAGGACTTGTACCACTTTGAGTGCAAAAGAGCTTCTCAGCCTTCCAAGTTCAGGGTTTGTGCTTTTACTTGAAGACAGGCTAGGAGGGCATCATTGGAGG--GAACATTTGCATGGATTTGGGAACATGCCCAGCCCTTGGCTATATAGTTTCCCTTGGGGGAATTCAGTAGACACAGCATAAAACTGATCTTTAAAGTTCTAAAAGCTTTTT-------ATAGAACTGGCTTCCTAGCTCTTTAAAGCCTTTTGACTTTTGTTTGGCTCAGGGAATTACAAGATGATTACGAAATTCTTTTTGTATCTCTTATCATAAAACAGGCTCTATGTATCTTAACA---TATTATAGAACAGGAACGTGACTGATTTGGCAGGCATTGAGTCACTTATCCTAATCTGGTGACCTTGCAAAATAA--AAATCTTCCCATTGTAGAGGTAATGATATTGAGCCCAGAAAATTTACTACTTTCTCCA---------------GGAGAAGAAAACTGCATCTAGAGAACAGATCAACTTAAAGCCCGGT i macFas5.chr5 I 341 C 0 s papAnu2.chr5 16452897 641 + 178775436 gaccAAATGATTTTTAAGATCCATTGAGATGTAACATGTCTATGATCCAAGAATATACTCTGacac--aaaaa--aatc-tttacaTGAGTGACATGATAAACATAATGTTGTCtatattgttgctgttgttttcagGACTTGTACCACTTTGAGTGCAAAAGAgcttctcagccttccaagttcaGGGTTTGTGCTTTTACTTGAAGACAGGCTAGGAGGGCATCATTGGAGG--GAACATTTGCATGGATTTGGGAACATGCCCAGCCCTTGGCTATATAGTTTCCCTTGGGGGAATTCAGTAGACACAGCATAAAACTGATCTTTAAAGTTCTAAAAGCTTTTT-------ATAGAACTGGCTTCCTAGCTCTTTAAAGCCTTTTGACTTTTGTTTGGCTCAGGGAATTACAAGATGATTGTGAAATTCTTTTTGTATCTCTTATCATAAAACAGGCTCTATGTATCTTAACA---TATTATAGAACAGGAACGTGACTGATTTGGCAGGCATTGAGTCACTTATCCTAATCTGGTGACcttgcaaaataa--aaatcttcccaTTGTAGAGGTAATAATATTGAGCCCGGAAAATTTACTACTTTCTCCA---------------GGAGAAGAAAACTGCAGCTAGAGAACAGATCAACTTAAAGCCTGGT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19936018 641 - 48547382 GACCAAATGATTTTTAAGATCCATAGAGATGTAACGTGTCTATGATCCAATAATATATTCTGACAC--AAAAA--AATC-TTTACATGAGTGACATGATAAACATAATGTTGTCTATATTGTTGCCGTTGTGTTCAGGACTTGTACCACTTTGAGTGCAAAAGAGCTTCTCAGCCTTCCAAGTTCAGGGTTTGTGCTTTTACTTGAAGACAGGCTAGGAGGGCATCATTGGAGG--GAACATTTGCATGGATTTGGGAACATGCCCAGCCCTTGGCTATATAGTTTCCCTTGGGAGAATTCAGTAGACACAGCATAAAACTGATCTTTAAAGTTCTAAAAGCTTTTT-------ATAGAACTGGCTTCCTAGCTCTTTAAAGCCTTTTGACTTTTGTTTGGCTCAGGGAATTACAAGATGATTACGAAATTCTTTTTGTATCTCTTATCATAAAACAGGCTCTATGTATCTTAACA---TATTATAGAACAGGAACGTGACTGATTTGGCAGGCATTGAGTCACTTATCCTAATCTGGTGACCTTGCAAAATAA--AAATCTTCCCATTGTAGAGGTAATAATATTGAGCCCAGAAAATTTACTACTTTCTCCA---------------GGAGAAGAAAACTGCAGCTAGAGAACAGATCAACTTAAAGCCTGGT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21296171 640 - 190850796 gaccaaatgatttttaagatccattgagatgtaacatgtctatgatccAAGAATATATTGTGACAC--AAATA--ATTC-TTTATATGAGTTACATGATAAACATAATGTTGTCTATATTGCTGCCATTGTGTTCAGGACTTATACCACGTTGAGTGCAAACAAGCCTCTCAAGCTTCCAAGTCCAGGGATTGTGCTTTCATTTGAAGATAGGCTAGGAGGGCATCATTGGAAG--GAACATTTGCATGTATCTGGGAACATGCCCAGAACTTGGCTGTCTAGTTTCCCTTGGGGAAATTCAGTAGACACAGCATAAAACTGATTTTTAAAGTTCTAAAAGATTTTT-------ATAGAACTGGCTTCATCACTCTTTAAAGCCTTTTGACTTTTGTTTGGCTCAGGGAATTACAAGATGATTAGGAAATG-TTTTTGTATCTCTCATCATAAAACAGGCTCTATGTATCTTAACA---TATTACAGAACAGGAATATGACTGACTTGTCAGGCGTAAAATCTCTTATCCTAATCTGGTGGCCTTGCAAAATAA--AAATCTTCCCATTGTAGAGGTAATAATATAGAGCCAGGAAAATTTACTACTTTCTCCA---------------GGAGAAGAAAACTGCAGCTAGAGAACAGATCAACTTAAAGCCTCGT i calJac3.chr3 I 1 C 0 s mm10.chr5 49274523 639 + 151834684 TGCCACATGACTCCCAAAACAAGCTGACTTCTGACATGTCAAGGCTCTATTAATATATCCCGATGC--AAACACTGACC-TGAAAGTAAGTCACATTGTATGCATAATGGCACCATTGTCACTGTCATTGCATTAAGCATGGACAGAACTTGGAGTTTGAAAAGAGCCCTTA--CCTCAAAGTGCCAGGAATATTCTTGAACTTGGAGGTGATCTAGGACAGCATGACTGGAAGGTGGTGTTTTGCATGCATTTGATAGCAAGACCAGCAGTTGGCAGTCTCCTTTCCCTGAGGGAATTTTAGTAGACACAGAATAAAACTGATCTTTACAGTTATAAAAGCCTTTTTTTTAAAATAGAACTGGCTTCATAGCTTTTGGAAGCCTTTTGGCTTTTGTTTGGCTCAGGGAAT---AAAACAGTTGAGAACTCTTTTATGTATCACCATAAATAAAACTGGGTCTATCTAACTTATTA---TATCATAGAACAAGAACATGACTGATTTCTCAG-------GACTCTCATCCTAACCTAGTGACCTTGAAAAAAAATGAAATCTT-CTATTGTGAGGGTAAAAATATTAAGCAGAGAAG-TTTACAAC-TTCACAC---------------GGAAAAGTAAACAGCAGAgagaaaacaaacaagctcgaagcttagt i mm10.chr5 C 0 I 1033 s canFam3.chr3 3865760 653 - 91889043 GACCAAATGATTTTTATGGTCCATTGAGAGTCCACATGCCTGTGATCCAATAATATATTCCAACAC--AACTA-------TTTATATAAGTAGCATGATATATATAACATTGCCTTTATTAATATCATTGTGTTGTGCACTTTCACTA-ATTAAGCTCCAACAAATTTCTTAACCTTCATAGATCACAGACTATGCTTCTGCTTGGAGACAGGCTAGGAGGGCCTGATTGGAAG--GGACAATTGCATGTATTTGGGTAAATGCCCAGCAGTTGGCTGTATAGTTTCCCTTGGGGGACTTTAGTAGACACAGCATAAAACTGAGCTTTAAAGTTCTAAAAGCCTTTT-------ATAGAACTGGCTTCATAGCTCTTTGACGCCTTTTGACTTTTGTTTGGCTCAGGGAATTATAAGGTGGTAGGAAACTCTTCTATGTATACCCCATAATAAAACAGGCTCCATGTATCTCAACAGTGTATTATAGAAGAGGAACATGATTGATTTGGCAGGCTTTAAGTCCCTTATCCTAACCTGGGGACCTTGCACAATGG--GAATGTTCCCATTGTAGAGACACTAATACTAAACTAGGGGAACTTACAATTTCCTCAAAGTTATAAACAAGCTAGAGAAGAAAATTGCACACAGAAAACAGAACA-CTAAAATCCTGAT i canFam3.chr3 I 187 C 0 a score=1073439.000000 s hg38.chr4_KI270790v1_alt 172131 346 + 220246 AATACTTTACTCAAAGCATGGTAATATGTTTTTTTGTGTGTGTAAAATCTCTAAAATGATAGTACAGCCAAGGCGGTATC----TGTTTCCAGTAATTTTACCGTATTTGAAGATGGGAAGAACCTATAAATTTCTAATATTAATTTATTAGTTTATCTT------ATAGAGATATAACTATGTATTTTTTAT-TTTAAAAACATTAAAATTCAACTATTATACATATACTATGTTCCCCGTAGAAAAATGAGAAAATACAAATACATTGACATTTATACATAAATCAACCATAAGATGTATGACTTTTTAAATAAATGAGCAAATATACAGGACCTACCCC-ATT----------TAAAAA---------TGTGTA s panTro4.chr4 21559889 346 + 193495092 AATACTTTACTCAAAGCATGGTAATATGTTTTTTTGTGTGTGTAAAATCTCTAAAATGATAGTACAGCCAAGGCGGTATC----TGTTTCCAGTAATTTTACCGTAGTTGAAGATGGGAAGAACCCataaatttctaatattaatttattagtttatctt------atagagatataactatgtattttttat-tttaaaaacattaaaattCAACTATTATACATATACTATGTTCCCTGTAGAAAAATGAGAAAATACAAATACATTGACATTTATACATAAATCAACCATAAGATGTATGACTTTTTAAATAAATGAGCAAATATACAGGACCTACCCC-ATT----------TAAAAA---------TGTGTA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21737301 346 + 198332218 AATACTTTACTCAAAGCATGGTAATATGTTTTTTTGTGTGTGTAAAATATCTAAAATGATAGTACAGCCAAGGCGGTATC----TGTTTCCAGTAATTTTACCGTAGTTGAAGATGGGGAGAACCTATAAATTTCTAATATTAATTTATTAGTTTATCTT------ATGGAGATATAACTATGtattttttat-ttaaaaaacattaaaattCAACTATTATACGTATACTATGTTCCCTGTAGAAAAATGAGAAAATACAAATACATTGACATTTATACATAAATCAACCGTAAGATGTATGACTTTTTAAATAAACGAGCAAATATACAGGACCTACCCC-ATT----------TAAAAA---------TGTGTA i ponAbe2.chr4 C 0 I 24 s nomLeu3.chr20 20346560 344 - 85365473 AATACTTTACTCAAAGCATGGTA--ATGTTTTTGTGTGTGTGTAAAATCTCTAAAATGATAGTACAGCCAAGGCGGTATC----TGTTTCCAGTAATTTTACCATAGTTGAAGATGGGAAGGACCTATAAATTTCTAATATTAATTTATTAGTTTATCTT------ATAGAGATACAACTATGTATTTTTTAT-TTAAAAAAAATTAAAATTCAACTATTATACATATACTATGTTACCTGTAGAAAAACGAGAAAATACAAATACATTGACATCTATATATAAATCAACCATAAGATGTATGACTTTTTAAATAAATGAGCAAATATACAGGACCTACCCC-ATT----------TAAAAA---------TGTGTA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16813390 360 + 184069350 AATACTTTACTCAAAGCACGGTAATATGTTTGTGTGCGCGTGTAAAATCTCTAAAATGATAGTACAGCCAAGGCTGTATCTTTTTGTTTCCAGTAATTTTACCATAGTTGAAGATGGGAGGAACCTCTACATTTCTAATATTAATTTATTAGTTTATTGT------ATAGAGATATAACTATGtattttttaatttaaaaaacattaaaattCAACCATTATACATATACTATGTTCTCTGTAGAAAAATGAGGAAATGCAAATACATTGACATTTATACATAAATCAACCATAAGATCCATGACTTTTTAAATAAATGAGCAAATATACAGGACCTACCCC-ATT----------TAGTTACACCTCCTCTGAGTA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20863268 360 + 189454096 AATACTTTACTCAAAGCACGGTAATATGTTTGTGTGCGCGTGTAAAATCTCTAAAATGATAGTACAGCCAAGGCTGTATCTTTTTGTTTCCAGTAATTTTACCATAGTTGAAGATGGGAGGAACCTCTACATTTCTAATATTAATTTATTAGTTTATTGT------ATAGAGATATAACTATGTATTTTTTAATTTAAAAAACATTAAAATTCAACCATTATACATATACTATGTTCCCTGTAGAAAAATGAGGAAATGCAAATACATTGACATTTATACATAAATCAACCATAAGATACATGACTTTTTAAATAAATGAGCAAATATACAGGACCTACCCC-ATT----------TAGTTACACCTCCTCTGAGTA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16453538 359 + 178775436 AATACTTTACTCAAAGCACGGtaatatgtttgtgtgtgcatgtaaaaTCTCTAAAATGATAGTACAGCCAAGGCTGTATCTTTTTGTTTCCAGTAATTTTACCATAGTTGAAGATGGGAGGAACCTAtacatttctaatattaatttattagttTAATGT------ATAGAGATAtaactatgtattttttaa-ttaaaaaacattaaaattcaacCATTATACATATACTATGTTCCCTgtagaaaaatgaggaaatgcaAATACATTGACATTTATACATAAATCAACCATAAGATACatgactttttaaacaaatgagcaAATATACAGGACCTACCCC-ATT----------TAGTTACACCTCCTCTGAGTA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19936659 360 - 48547382 AATACTTTACTCAAAGCACGGTAATATGTTTGTGTGTGCGTGTAAAATCTCTAAAATGATAGTACAGCCAAGGCTGTATCTTTTTGTTTCCAGTAATTTTACCATAGTTGAAGATGGGAGAAACCTATACATTTCTAATATTAATTTATTAGTTTAATGT------ATAGAGATATAACTATGTATTTTTTAATTTAAAAAACATTAAAATTCAACCATTATACATATACTATGTTCCCTGTAGAAAAATGAGAAAATATAAATACATTGACATTTATACATAAATCAACCATAAGATACATGACTTTTTAAATAAATGAGCAAATATACAGGACCTACCCC-ATT----------TAGTTACACCTCCTCTGAGTA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21296811 368 - 190850796 AATACTTCACTCAAAGCCTGGTAAT---TTTTTGTGTGCATGTAAAATCTCTAAAATTATAGGACATCCAAGGTGGTACCTTTTTGTTTCCAGTAATTTTACCATAGTCAAAGATGGGAAGAACCTATACATTTCTAAAATTGATGTATTATTTTATTTTATACAGATAGAGATATAGCtat---tttattat-ttttaaaacattaaaattCATTCATTATACATATAATATGTTCCTTGTAAAAAAATGAGAAAATACAAATACATCAACATTTATACATAAACCAACCACAAGATATATGACTTTTTAAACAAATGAGCAAATGTACAGGACCTACCCC-ATT-TAAAATGTATAGTTACAACTCCTCTGTGTA i calJac3.chr3 C 0 C 0 s canFam3.chr3 3866413 305 - 91889043 AATAC------------------ATATATTTTT-------TGTAATACTTCTAAAATTGTAGGAAATCCAGGGTGGCATATTTTTATCTCCAGCAGGTTTAATGTAGCTAAGGATTGGAAGAACCTATAAACTTCTA---------------------TT-------------------------TTCATTAC-CTTAAAAGTATTAAAATGTAATCATTATCCATATAGTGTGTTCATCACAGCTAGATGAGAAAATACAAATACATAGACATTTATACATAAATCATTCCTAGGATATATGATTTTTGAAACAAGTGGACAAGTATATAGCACCTACCCCTATTTTTAAATGTGTATTTATACCTTCTCTGTGTA i canFam3.chr3 C 0 C 0 e mm10.chr5 49275162 1033 + 151834684 I a score=20085.000000 s hg38.chr4_KI270790v1_alt 172477 9 + 220246 CAGTTAGAG s panTro4.chr4 21560235 9 + 193495092 CAGTTAGAG i panTro4.chr4 C 0 C 0 s nomLeu3.chr20 20346904 5 - 85365473 CAGTT---- i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16813750 9 + 184069350 CAGTTGGAG i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20863628 9 + 189454096 CAGTTGGAG i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16453897 9 + 178775436 CAGTTAGAG i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19937019 9 - 48547382 CAGTTAGAG i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21297179 9 - 190850796 CAGCTAGAG i calJac3.chr3 C 0 C 0 s canFam3.chr3 3866718 9 - 91889043 CAATTAGAG i canFam3.chr3 C 0 C 0 e mm10.chr5 49275162 1033 + 151834684 I e ponAbe2.chr4 21737647 24 + 198332218 I a score=389286.000000 s hg38.chr4_KI270790v1_alt 172486 123 + 220246 AGAATTCACACTTCC----------AAAGCTCTCAATCATCTATAACCATTTTTTATGATTGGAAGAAGTACCAGGTAGAGATA--GAA---CAGAACCATAACACAGATTAGAATGAGCAGCTGAAGTAGCCAAGAT s panTro4.chr4 21560244 122 + 193495092 AGAATTCACA-TTCC----------AAAGCTCTCAATTATCTATAACCATTTTTTATGATTGGAAGAAGTACCAGGTAGAGATA--GAA---CAGAACCATAACACAGATTAGAATGAGCAGCTGAAGTAGCCAAGAT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21737671 126 + 198332218 AGAATTCACACTTCC----------AAGGCTCTCAATTATCTATAACAATTTCTTATGATTGGAAGAAGTACCAGGTAGAGATA--GAACAGCAGAACTATAACAGAGATTAGGATGAGCAGCTGAAGTAGCCAAGAT i ponAbe2.chr4 I 24 C 0 s nomLeu3.chr20 20346909 126 - 85365473 AGAATTCACACTTCC----------AAGGCTCTCAATTATCTATAACCATTTTTTATGATTGGAAGAAGTACCAGGTAGAGATA--GAACAGCAGAACCATAACAGAGATTAGAATGAGCAGCTGAAGTAGCCAAGAT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16813759 135 + 184069350 AGAATTCACACTTTCAATTATTTATAATAATCTCAATTATCTATAACTACTT-TTATAATTGGAGGAAGTACCAGGCAGAGATA--GAACAGCAGAATCATAACAGAGATTAGAATGAGCAGCTGAAGTAGCCAAGAT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20863637 135 + 189454096 AGAATTCACACTTTCAATTATTTATAATAATCTCAATTATCTATAACTACTT-TTATAATTGGAAGAAGTACCAGGTAGAGATA--GAACAGCAGAATCATAACAGAGATTAGAATGAGCAGCTGAAGTAGCCAAGAT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16453906 135 + 178775436 AGAATTCACACtttcaattatttataataatcccAATTATCTATAACTACTT-TTATAATTGGAAGAAGCACCAGGTAGAGATA--GAACAGCAGAATCATAACAGAGATTAGAATGAGCAGCTGAAGTAGCCAAGAT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19937028 135 - 48547382 AGAATTCACACTTCCAATTATTTATAATAATCTCAATTATCTATAACTACTT-TTATAATTGGAAGAAGTACCAGGTAGAGGTA--GAACAGCAGAATCATAACAGAGATTAGAATGAGCAGCTGAAGTAGCCAAGAT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21297188 125 - 190850796 AGAATTCATGCTTCC----------AAGGCTCTCAATTATCTATAACCATTT-TTATAATGGCAAGAAGTACCAGGTAGAAATA--GAACAGCAGAAACATAACAGAGATTAGAATGGGCCATGGAAGTAGCCAAGAT i calJac3.chr3 C 0 C 0 s canFam3.chr3 3866727 127 - 91889043 ACCATTCAGACTTTC----------TGGGCTCTGGATTATGTACAACAGTTT-CTATAATGGGAAGAAGTACTGGGTAGAGATAAGAAAAAGCAGAACCACGGCAGAGATTAGAAGGGGTAGCTGACATGACCGAGAT i canFam3.chr3 C 0 C 0 e mm10.chr5 49275162 1033 + 151834684 I a score=3600.000000 s hg38.chr4_KI270790v1_alt 172609 1 + 220246 C s panTro4.chr4 21560366 1 + 193495092 C i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21737797 1 + 198332218 C i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20347035 1 - 85365473 C i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16813894 1 + 184069350 C i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20863772 1 + 189454096 C i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16454041 1 + 178775436 C i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19937163 1 - 48547382 C i chlSab2.chr27 C 0 C 0 s canFam3.chr3 3866854 1 - 91889043 C i canFam3.chr3 C 0 C 0 e mm10.chr5 49275162 1033 + 151834684 I e calJac3.chr3 21297313 0 - 190850796 C a score=897.000000 s hg38.chr4_KI270790v1_alt 172610 23 + 220246 ---AGAAGTGATTAGGTCAAATGGTA s canFam3.chr3 3866855 26 - 91889043 ACAAGAAGTGATAGAGGCAAGCAATA i canFam3.chr3 C 0 C 0 e mm10.chr5 49275162 1033 + 151834684 I e chlSab2.chr27 19937164 0 - 48547382 C e macFas5.chr5 20863773 0 + 189454096 C e rheMac3.chr5 16813895 0 + 184069350 C e calJac3.chr3 21297313 0 - 190850796 C e papAnu2.chr5 16454042 0 + 178775436 C e nomLeu3.chr20 20347036 0 - 85365473 C e ponAbe2.chr4 21737798 0 + 198332218 C e panTro4.chr4 21560367 0 + 193495092 C a score=0.000000 s hg38.chr4_KI270790v1_alt 172633 525 + 220246 TTTCTAGTatcccattactgggtatatacccaaatgactataaatcatgctgctataaagacacatgcacacgtatgtttattgcggcattattcacaatagcaaagacttggaaccaacccaaatgtccaacaatgatagactggattaagaaaatgtggcacatatacaccatggaatactatgcagccataaaaaatgatgagttcatgtcgtttgtagggacatggatgaaattggaaatcatcattctcagtaaactatcgcaagaacaaaaaaccaaacaccgcatattctcactcataggtgggaattgaacaatgagatcacatggacacaggaaggggaatatcacactctggggactgtggtggggtggggggaggggggagggatagcattgggagatatacctaatgctagatgacgcgttagtgggtgcagcgcaccagcatggcacatgtatacatatgtaactaacctgcacaatgtgcacatataccctaaaacttaaagtataaaaaa e mm10.chr5 49275162 1033 + 151834684 I e chlSab2.chr27 19937164 0 - 48547382 C e macFas5.chr5 20863773 0 + 189454096 C e rheMac3.chr5 16813895 0 + 184069350 C e calJac3.chr3 21297313 0 - 190850796 C e canFam3.chr3 3866881 0 - 91889043 C e papAnu2.chr5 16454042 0 + 178775436 C e nomLeu3.chr20 20347036 0 - 85365473 C e ponAbe2.chr4 21737798 0 + 198332218 C e panTro4.chr4 21560367 0 + 193495092 C a score=148.000000 s hg38.chr4_KI270790v1_alt 173158 8 + 220246 aaaaaaaa s mm10.chr5 49276195 8 + 151834684 AAGATGAG i mm10.chr5 I 1033 C 0 e chlSab2.chr27 19937164 0 - 48547382 C e macFas5.chr5 20863773 0 + 189454096 C e rheMac3.chr5 16813895 0 + 184069350 C e calJac3.chr3 21297313 0 - 190850796 C e canFam3.chr3 3866881 0 - 91889043 C e papAnu2.chr5 16454042 0 + 178775436 C e nomLeu3.chr20 20347036 0 - 85365473 C e ponAbe2.chr4 21737798 0 + 198332218 C e panTro4.chr4 21560367 0 + 193495092 C a score=273.000000 s hg38.chr4_KI270790v1_alt 173166 1 + 220246 a s calJac3.chr3 21297313 1 - 190850796 A i calJac3.chr3 C 0 C 0 s mm10.chr5 49276203 1 + 151834684 A i mm10.chr5 C 0 C 0 e chlSab2.chr27 19937164 0 - 48547382 C e macFas5.chr5 20863773 0 + 189454096 C e rheMac3.chr5 16813895 0 + 184069350 C e canFam3.chr3 3866881 0 - 91889043 C e papAnu2.chr5 16454042 0 + 178775436 C e nomLeu3.chr20 20347036 0 - 85365473 C e ponAbe2.chr4 21737798 0 + 198332218 C e panTro4.chr4 21560367 0 + 193495092 C a score=55854.000000 s hg38.chr4_KI270790v1_alt 173167 18 + 220246 aGAAGTGAT-TAGGAAGT---C s panTro4.chr4 21560367 18 + 193495092 AGAAGTGAT-TAGGAAGT---T i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21737798 18 + 198332218 AGAAGTGAT-TAGGAAGT---C i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20347036 18 - 85365473 AGAAGTGAT-TAGGAAGT---C i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16813895 18 + 184069350 AGAAGTGAT-TAGGAAGT---C i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20863773 18 + 189454096 AGAAGTGAT-TAGGAAGT---C i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16454042 18 + 178775436 AGAAGTGAT-TAGGAAGT---C i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19937164 18 - 48547382 AGAAGTGAT-TAGGAAGT---C i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21297314 18 - 190850796 AGCAATGAT-TAGGCAGT---C i calJac3.chr3 C 0 C 0 s mm10.chr5 49276204 22 + 151834684 AGGAATGATAGAGGCAATCGAC i mm10.chr5 C 0 C 0 e canFam3.chr3 3866881 0 - 91889043 C a score=2655421.000000 s hg38.chr4_KI270790v1_alt 173185 813 + 220246 ACAATTCTACCAACCTGGGAAAAGATACGCAAAGAAATAG--GCAGGAGATGGTGTAGCTTTGTCCCCTTAAAAGCACTGGTGTTGTTCAATTTTGTAGCACTtccaatgactatgtaatgaacattgactgtgcaccagt-atggtctaggcact---------------------------------------------------------ggattacgataataaaca-acaaaaa----a-cccataattattttaaaaagtttatattccacttttacagacatttgtaaatattctatgttattttaggtagtggtaatttttatggagaaaac----------------------------------------------------------------------------taCA---ATGCCtcccagcttgtgtgggacagtttggatttgtgcctgttttcctgctgtgatgattaagattgcctcttttt------------------------actctcaaaaatgtcctagttttggtgaCCCTCTCTGTAAAAGAAATTTCAAAacaatg--ataatat-gaaaatatgtatgg-----gaggggt----------tct---tttggactggatgatcaggaaatgtctcact-aggtgatatctgagctgagaattaaagTAATCACACAGCTCTTAAGGGTGAATTTGAATTTGA-GAGGGGAAAACTGTGTAG-----------------------TCAAACAAAGACGTAGTTTAGATTCTGACAAACCTGATTTTATACCTCAGCCCCAGCAC---------------------------ACCCTAG------GTTTGGTACTTTGGGCTTGGCTCCCTGTGAGATACTCAATAG-TATACCTTAAGTCTAATAATGTGATTCAGAAATGAACACATTAAATTACATGGGCAAAGAAAC-TTATATTTATTTATGATATCCTCTCACAATACCATAAAGAAATAATCTATATTTTAAAGCAACTACTGTGCAGTACACACTGTGTT s panTro4.chr4 21560385 812 + 193495092 ACAATTCTACCAACCTTGGAAAAGACACACAAAGAAATAG--GCAGGAGATGGTGTAGCTTTGTCCCCTTAAAAGCACTGGTGTTGTTCAATTTTGTAGCACTtccaatgactatgtaatgaacattgactgtgcaccagt-atggtctaggtact---------------------------------------------------------ggattatgataatcaaca-acaaaaa----a-cccataattattttaaaaagtttacattccacttttacagacatttgtaaatattctatgttattttaggtagtggtaatttttatggagaaaac----------------------------------------------------------------------------taCA---ATGCCtcccagcttgtgtgggacagtttggatttgtgcctgttttcctgctgtgatgattaagattgcctcttttt------------------------actctcaaaaatgtcctagttttggtgaCCCTCTCTGTAAAAGAAATTTCAAAACAACG--ATAATAT-GAAAATATGTATgg-----gaggggt----------tct---tttggactggatggtcaggaaatgtctcact-aggtgatatctgagctgagaattaaagTAA-CACACAGCTCTTAAGGGTGAATTTGAATTTGA-GAGGGGAAAACTATGTAG-----------------------TCAAACAAAGAAGTAGTTTAGATTCTGACAAACCTGATTTTATACCTCAGCCCCAGCAC---------------------------ACCCTAG------GTTTGGTACTTTGGGCTCGGCTCCCTGTGAGATACTCAATAG-TATACCTTAAGTCTAATAATGTGATTCAGAAATGAACACATTAAATTACATGGGCAAAGAAAC-TTATATTTATTTATGATATCCTCTCACAATACCATAAAGAAATAATCTATGTTTTAAAGCAACTACTGTGCAGTACACACTGTGTT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21737816 812 + 198332218 ACAATTCTACCAACCTTGGAAAAGATATGCAAAGAAATAG--GCGGGAGATGGTGTAGTTTTGTCCCCTTAAAAGCACTGGTATTGTTCAATTTTGTAGTACTtccaatgactatgtaatgaacattgactgtgccccagt-acagtctaggcact---------------------------------------------------------ggattacaataataaaca-acaaaaa----a-cccaaaattatttttaaaagtttatattccacttttacagacatttgtaaatattctatgttattttaggtagtggtaatttttatggagaaga-----------------------------------------------------------------------------TACA---ATGCCtcccagcttgtctgggacagtttggatttgtgcctgtttacctgctgtgatgattaagattgcctcttttt------------------------actctcaaaaatgtcatagttttggtgaCCCTCTCTGTAAAAGAAATTTCAAAacaatg--ataatat-gaaaatatgtatgg-----gaggggt----------tct---tttggactggatggtcaggaaatgtctcact-aggtgatatctgagctgagaattaaagTAATCACACAGCTCTTAAGGGTGAATTTGAATTTGA-GAGGGGAAAACTATGTAG-----------------------TCAAACAAAGACGTAGTTTAGATTCTGACAAATCTGGTTTTATACCTTAGCCCCAGCAC---------------------------ACCCTAG------GTTTGGAACTTTGGGCTCGGCTCCCTGTGAGATACTCAATAG-TATACCTTAAGTCTAATAATGTGATTCAGAAATGAACACATTAAATTACACGGGCAAAGAAAC-TTATATTTATTTATGATATCCTCTCACAATACCATAAAGAAATAATCTATATTTTAAAGCAACTACTGTGCAGTACACACTGTGTT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20347054 813 - 85365473 ACAATTCTACCAACCTTGGAAAAGATATGCAAAGAAATAG--GCAGGAGATGGTGTAGCTTTGTCCCCTTAAAAGCACTGGTGTTGTTCAGTTTTGTAGTACTtccagtgaccatgtaatgaacattgactgtgcaccagt-atggtctaggcact---------------------------------------------------------ggagtacaataataaaca-acaacaa----a-cccataattatttttaaaagtttatactccacttttacagacatttgtaaatattctatgttattttaggtagtggtaatttttacggagaaaac----------------------------------------------------------------------------taCG---ATGCCtcccagcttgtctgggacagtttggatttgtgcctgttttcctgctgtgatgattaagattgcctcttttt------------------------actctcaaaaatgtcctagttttggtgaCCCTCTCTGTAAAAGAAATTTCAAAacaatg--gtaatat-aaaaatatgtatgg-----gaggggt----------tct---tttggactggatggtcaggaaatgtctcact-aggtgatatctgagctgagaattaaagTAATCACATAGCTCTTAAGGGTGAATTTGAATTTGA-GAGGGGAAAACTATGTAG-----------------------TCAAACAAAGACATAGTTTAGATTCTGACAAATCTGGTTTTATACCTTAGCCCCAGCAC---------------------------ACCCTAG------GTTTGGTACTTTGGGCGAGGCTCCCTGTGAGATACTCAATAG-TATACCTTAAGTCTAATAATGTGATTCAGAAATGAACACATTAAATTATATGAGCAAAGAAAC-TTATATTTATTTATGATATCCTCTCACAATACCATAAAGAAATAATCTATATTCTAAAGCAACTACTGTGCAGTACACACTGTGTT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16813913 885 + 184069350 ACAATTCTACCAACTGTGGAAAAGATATGCAAAGAAACAG--GCAGGAGATGGTGTAGCTTTGTCCCCTTAAAAGCACTGG---TGTTCAATTTTGTAGTACTTCCAACGACTATGTAATGAACACTGACTGTGCACCAGT-ATGGTCTAGGCACCGGATTACAATAAACAGCAAAAGCCCATTTGACTGTGCACCAGTATGGTCTAGGCACTGGATT---ACAATAAACA-GCAAAAA----A-CCCATAATTATTTTAAAAAGTGTATATTCCACCTTTACAGACATTTGTAAATATTCTGTGTTATTTTAGGTAGTGATAATTTTTATGGAAAAGAC----------------------------------------------------------------------------Tacc---atgcctcccagcttgtctgggacagtttggatttatgcctgttttcctgctgtgattattaagattgcctcttttt------------------------actctcaaaaatgtcccagttttggtgaCCCTCTCTGTAAAAGAAATTTcaagacaatg--ataatat-gaaaatatgtatgg-----gaggggt----------tct---tttggattggatggtcaggagatgtctcact-aggtgatatttgagctgagaattaaagTAATCACACAGCTCTTAAGGGTGAATTTGAATTTGA-CAGGGGAAAACTATGTAGTCAAACAAAGATATAGTTCAGATTCAAACAAAGATGTAGTTCAGATTCTAACAAATCTGGTTTTATACCTTAGCCCCAGCAC---------------------------ACCCTAG------GTTTGGTACTTCGGGCTAGGCTCCCTGTGAGATACTCAATAG-TATAGCTTAAGTCTAATAATGTGATGCAGAAATGAACACATTAAATTTTATGGGCAAAGACAC---ATATTTATTTATGATATCCTCTCACAACACCATAAGGAAATAATCTATATTTTAAAGCAACTACTGTGCAGTAAACACTGTGTT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20863791 828 + 189454096 ACAATTCTACCAACTGTGGAAAAGATATGCAAAGAAACAG--GCAGGAGATGGTGTAGCTTTGTCCCCTTAAAAGCACTGG---TGTTCAATTTTGTAGTACTTCCAACGACTATGTAATGAACATTGACTGTGCACCAGT-ATGGTCTAGGCACC---------------------------------------------------------GGATT---ACAATAAACA-GCAAAAA----A-CCCATAATTATTTTAAAAAGTGTATATTCCACCTTTACAGACATTTGTAAATATTCTGTGTTATTTTAGGTAGTGATAATTTTTATGGAAAAGAC----------------------------------------------------------------------------Tacc---atgcctcccagcttgtctgggacagtttggatttatgcctgttttcctgctgtgattattaagattgcctcttttt------------------------actctcaaaaatgtcccagttttggtgaCCCTCTCTGTAAAAGAAATTTcaagacaatg--ataatat-gaaaatatgtatgg-----gaggggt----------tct---tttggattggatggtcaggagatgtctcact-aggtgatatttgagctgagaattaaagTAATCACACAGCTCTTAAGGGTGAATTTGAATTTGA-CAGGGGAAAACTATGTAGTCAAACAAAGATATAGTTCAGATTCAAACAAAGATGTAGTTCAGATTCTAACAAATCTGGTTTTATACCTTAGCCCCAGCAC---------------------------ACCCTAG------GTTTGGTACTTCAGGCTAGGCTCCCTGTGAGATACTCAATAG-TATAGCTTAAGTCTAATAATGTGATGCAGAAATGAACACATTAAATTTTATGGGCAAAGACAC---ATATTTATTTATGATATCCTCTCACAACACCATAAGGAAATAATCTATATTTTAAAGCAACTACTGTGCAGTAAACACTGTGTT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16454060 832 + 178775436 ACAATTCTACCAACTGTGGAAAAGATATTCAAAGAAACAG--GCAGGAGATGGTGTAGCTTTGTCCCCTTAAAAGCACTGG---TGTTCAATTTTGTAGTACTTCCAATGACTATGTAATGAACATTGACTGTGCACCAGT-ATGGTCTAGGCACC---------------------------------------------------------GGATTACAACAATAAATA-GCAAAAA----AccccataattattttaaaaggtgtaTATTCTACCTTTACAGACATTTGTAAATATTCTATGTTATTTTAGGTCGTGATAATTTTTATGGAGAAGAC----------------------------------------------------------------------------TACC---ATGCCTCCCAGCTTGTCTGGGACAGTTTGGATTTATGCCTGTTTTCCTGCTGTGATTATTAAGATTGCCTCTTTTT------------------------ACTCTCAAAAATGTCCCAGTTTTGGTGACCCTTTCtgtaaaagaaatttcaaaacaatg--ataatat-gaaaatatgtatgG-----GAGGGGT----------TCT---TTTGGATTGGATGGTCAGGAGATGTCTCAgt-aggtgacatttgagctgagaatTAAAGTAATCACACAGCTCTTAAGGGTGAATTTGAATTTGA-CAGGGGAAAACTATGTAGTCAAACAAAGATGTAGTTCAGATTCAAACAAAGATGTAGTTCAGATTCTAACAAATCTGGTTTTATACCTTAGCCCCAGCAC---------------------------ACCCTAG------GTTTGGTACTTCGGGCTAGGCTCCCTGTGAGATACTCAATAG-TATAGCTTAAGTCTAATAATGTGATGCAGAAATGAACACATTAAATTATATGGGCAaagacac---atatttatttatgatatCCTCTCACAACACCATAAGGaaataatctatattttaaagcaaCTACTGTGCAGTAAACACTGTGTT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19937182 806 - 48547382 ACAATTCTACCAACTGTGGAAAAGATATGCAAAGAAACAG--GCAGGAGATGGTGTAGCTCTGTCCCCTTAAAAGCACTGG---TGTTCAATTTTGTAGTACTTCCAGTGACTATGTAATGAACATTGACTGTGCACCAGT-ATGGTCTAGGCACC---------------------------------------------------------GGATTACAACAATAAACA-GCAAAAA----A-CCCATAATTATTTTAAAAAGTGTATATTCTACCTTTACAGACATTTGTAAATATTC--TGTTATTTTAGGTCATGATAATTTTTATGGAGAAGAC----------------------------------------------------------------------------Tacc---atgcctcccagcttgtctgggacagtttggatttatgcctgttttcctgctgtgattattaagattgcctcttttt------------------------actctcaaaaatgtcccagttttggtgaCCCTCTCGGTAAAAGAAATTTcaaaacaatg--ataatat-gaaaatatgtgtgg-----gaggggt----------tct---tttggattggatggtcaggagatgtctcact-aggtgatatttgagctgagaattaaagTAATCACACAGCTCTTAAGGGTGAATTTGAATTTGA-CAGGGGAAAACTATGTAG-----------------------TCAAACAAAGATGTAGTTTAGATTCTAATAAATCTGGTTTTATACCTTAGCCCCAGCAC---------------------------AACCTAG------GTTTGGTACTTTGGGCTAGGCTCCCTGTGAGATACTCAATAG-TATAGCTTAAGTCTAATAATGTGATGCAGAAATGAACACATTAAATTATATGGGCAAAGACAC---ATATTTATTTATGATATCCTCTCGCAACACCATAAGGAAATAATCTATATTTTAAAGCAACTACTGTGCAGTAAACACTGTGTT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21297332 800 - 190850796 ACAGTTCTACCAACCTTGGAAAAGACATGCAAAGAAACAG--GCAGGAAATAGTGTAGCTTTGTCCCCTTAAAAGCTCTGGTACTGTTCAACTTTGTAGTATTTCCAATGACTGTGTAAGGAATATTGACTGTTC-------ATGGTCTAGGCATT---------------------------------------------------------GGATTACAATAATAAACA-ACAAAAA------CTCACAATTATTTTTAAAAGTTTATATTCCACTTTTAGAGATATTGATAAATATTCTATAACATTTTAGGTAATGGTAATTTTTATGAAGAAGAC----------------------------------------------------------------------------Tacc---atatct-ctagtttgcctgggacagtttggatttatgcctgttttctgcttgtgattattaagattgcctctttttaGAGGCCTCTTTTTTGAGGCAAAAAGTCTCAAAAATGCCCCAGTTCTGGTGACCCTCTCTGTAAAAGAAATTTCAAAACAATG-----------AAAATATATATgg-----gaggggt----------tct---tgtggatcagatggtcaggaaatgtctcact-aggtgatatttgagcTG-----TTAATTAATCACACAGCTCTTAAGGGTGAATTTGAACTTGA-GAAGGGAAAACTATGCAG-----------------------TCAAACAAAAATGTAGTTTAGCTTCTGACAAATCTAGTTTTACA-GTTAGCCCCAGCAC---------------------------ATCCTAG------GTTTGGCACTTAGGGCTAGATTCCCTGTGAGATATTCAATAG-TATAGATTAAGTCTAATAGTGT-------------ACCCATTAAATTATATGGGCAAAGAAAT-TTACATTTATTTATGATAGCCTCTCACAACACCATAA--AAAGAATCTATATTTTAAAGCAATGACTATGTAATAAATACCATCTT i calJac3.chr3 C 0 C 0 s mm10.chr5 49276226 840 + 151834684 ACAAAGCTTCCACCTGTGGGAATG-CACACAGAGAAATGGAAGTGATAGTTGATGTGCATTTGTTCCCTAAGGGGCACTGGTCATCTCTCATTTAGTA-TATGTGAAATGAATATGCATTGAACATTAGTCCTGT-----------TGTAGGCATG---------------------------------------------------------GC------ACAAACAACACATAAAAC----A-GACGTGACTGCCTAAAA-----CTTCTGCCACCTTTAAAGACAATTTTGATTAATCTGAAGGATTTTAGGT-GTGCTG--TTTTATGGAGAAGGTGAAATGTGGGCCtgtacgtatgcatgagtgcatgtgtgtgcacctgtgaatgtgagtatgcatgtgtatgtgaatgtacacatatatTTCCAAGTTTATCTCTGCCA-TTTAAATCTGTCTTTGTTTTC----TGCCATT-TTAAGGCTATTTTCTGTA------------------------ACTCTCACAACTA--CTACTCTTTACGGTTTTCT---TAAAGAAAATCTCAGAA----G--TTGATATCAAAGAAACTCATGG-----TAGGAAT----------GACGGGGTTAGATTGGCTGATCAGAAAAT-----AAG-ACCAGAGTCTTCAGCCAATATTAAAAGCCTTGTCACAGCTCTTCAGAGAAAGTTTGAATTTCACCAGAAGAAATCCAT--AG-----------------------TGAAAC----ATGTATTTTGGATCCTGACATGT---ATTTTGGATCTCATCCCCAGCCT---------------------------GTGCCAG-----AATTTCACAACTTGCATTAGATTCCATGCAAAATACTCACTGG------CTTCCATCCAATAATGTCATTCAGAAATGGGCACATTAAATTGTAC-AACAAAGACACATAAGATTTTCTTGTGGTGTCTTCTCCCAA-ACCATGATATACTAGGCTGTATGTTTTAACCACTGCTGTACAATAAACACTATGCT i mm10.chr5 C 0 C 0 s canFam3.chr3 3866881 814 - 91889043 ACAATCCTACCAACTTGGGGGAAGACACACAGAAAAACAGAAGCAGGAGATA---TAGCATTGGCCCCTAAAAAGC------------CAattcagtcatacatcagatgactacttattgaacatttatcatgtgctaggaaaggtctaggcaac---------------------------------------------------------ggattaccataatgaaca-aaatgaacatgg-cccctaa------aaaggagtttatgttccagttttatagacacttgcaaacaaccaaAATTATTTTAGATAGTGG-AATTCTCAAGGAGAAAgt----------------------------------------------------------------------------gacc---aaatatcccagtttgtctgggacagtcttgatttacacgcatgtttgtgctgtgg---tttggattgtctcctttt------------------------actctcagaagggtctcagtttTAGTCACCCTCTCTATAAAACAAATTTCAAAAGGATGATATAAAAT-AAAGGCATTAGGGGACAGTGAGGGGTGTGTGTGTGCTGT---TTTGGATT---------GGAAATGGCTCAGTAAGGTGATATCTGACCTGAGAATTAAAGTCATCACACAGCTCTTCAGAGTGAGTTTGAGTTTGA-GGAAGGAAAACTGTGTAG-----------------------TGAAACAAAGATATGGGTTGGACTCGGACAAATCCAGTTCTATACCTTAGCCACATCACATCACACTCGGACAAATCCAGTTCTATACCTTAGCCCATCATGTGGCACCTTGGGATAGGTTCCCCAAGGGCTGCTCAAGGGGTACAACTCAAGTCTGATAATGTGATTCATAAAGGAACATATTAAATTATAT-------GAAGT-GGATACTTGATTATGAGATCTTTCCCGAAAAC-----------------TATTTTTGAGCAAATACTATACAATATACTGTGTGTT i canFam3.chr3 C 0 C 0 a score=68545.000000 s hg38.chr4_KI270790v1_alt 173998 21 + 220246 TGGGTACAGCTGGTTAATTAA s panTro4.chr4 21561197 21 + 193495092 TGGGTACAGCTGGATAATTAA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21738628 21 + 198332218 TGGGTACAGCTGGATAATTAA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20347867 21 - 85365473 TGGGTACAGATGGATAATTAA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16814798 21 + 184069350 TGGGTTCAGCTGGATAATTAA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20864619 21 + 189454096 TGGGTTCAGCTGGATAATTAA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16454892 21 + 178775436 TGGGTTCAGCTGGATAATTAA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19937988 21 - 48547382 TGGGTTCGGCTGGATAATTAA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21298132 21 - 190850796 TGGGTATAGCTGGATAAttaa i calJac3.chr3 C 0 C 0 s canFam3.chr3 3867695 21 - 91889043 AGGGGAGAGCTGGAGAATTTA i canFam3.chr3 C 0 I 208 e mm10.chr5 49277066 0 + 151834684 C a score=414288.000000 s hg38.chr4_KI270790v1_alt 174019 138 + 220246 GTATTACCggttgagtatccctaatccaaaaatatgaaatccaaactgctccaaaatctgagcctttctgaatgctcaatggacactcaaagaaaatgctcagtggagcactttggatttcagattttcaaattagga s panTro4.chr4 21561218 138 + 193495092 GTATTACCggttgagtatccctaatccaaaaatatgaaatccaaactgctccaaaatctgagcctttctgaatgctcaatggacactcaaagaaaatactcagtggagcactttggatttcagattttcaaattagga i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21738649 138 + 198332218 GTATTACCGTttgagtatccctaatccaaaaatatgaaatccaaactgctccaaaatctgaacctttctgaatgctcaatggacactcaaagaaaacgttcagtggagcactttggatttcagattttcaaattagga i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20347888 138 - 85365473 GTATTACCggttgagtatccctaatccaaaaatatgaaatccaaactgctccaaaatctgaccctttctgaatgctcaatggacactcaaagaaaatgctcagtggagcactttggatttcagattttcaaattagga i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16814819 138 + 184069350 GTATTACTggttgagtatccctaattcaaaaatatgaaatccaaactgctccaaaatctgaacttttctgaatgctcaatggacactcaaaggaaatgctcagtggagcactttggatttcaaattttcagattagga i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20864640 138 + 189454096 GTATTACTggttgagtatccctaattcaaaaatatgaaatccaaactgctccaaaatctgaacctttctgaatgctcaatggacactcaaaggaaatgctcagtggagcactttggatttcaaattttcagattagga i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16454913 138 + 178775436 GTATTACTGGTTGAGTAGCCCtaattcaaaaatatgaaatccaAACTGCTCCCAAATCTGAACCTTTCTGAATGCTCAAtggacactcaaaggaaatgctcagtggagcactttggatttcaagttttcagattagga i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19938009 138 - 48547382 GTATTACTggttgagtatccctaattcaaaaatatgaaatccaaactgctccaaaatctgaacctttctgaatgctcaatggacactcaaaggaaatgctcagtggagcactttggatttcaaattttcagattagga i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21298153 124 - 190850796 gtat--------------ccctaatccaaaaatatgaaatccaaaaggctccaaaatctgaaagtttctgaatgctaaatggatactcaaagaaaatgatcagtggagcattttggatttcagattttcagattagga i calJac3.chr3 C 0 C 0 e mm10.chr5 49277066 0 + 151834684 C e canFam3.chr3 3867716 208 - 91889043 I a score=317551.000000 s hg38.chr4_KI270790v1_alt 174157 109 + 220246 atgctgaaccagtatatattctgcaaatattccacaatccagaagagtccaaaaaccaaaacactgctgatccaagcatttcaatgatgagatactgaaccAGGTTTTC s panTro4.chr4 21561356 109 + 193495092 atgctgaaccaatatatattctgcaaatattccaaaatccagaagagtccaaaaaccaaaacactgctgatccaagcatttcaatgatgagatactgaaccAGGTTTTC i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21738787 109 + 198332218 atgctgaaccagtatatattctgcaaatattccaaaatccagaagagtccaaaaaccaaaacactgctggtccaagcatttcaatgatgagacactgaaccAGGTTTTC i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20348026 109 - 85365473 atgctgaaccagtatatattctgcaaatattccaaaatccagaagagtccaaaaaccaaaacactgctggtccaagcatttcaatgatgagatactgaaccAGGTTTTC i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16814957 109 + 184069350 atgctgaaccagtatatattctgcaaatattccaaaatccagaagcgtccaaaaaccaaaacactgctggtccaagcatttcaatgatgagatactgaaccAGGTTTTC i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20864778 109 + 189454096 atgctgaaccagtatatattctgcaaatattccaaaatccagaagcgtccaaaaaccaaaacactgctggtccaagcatttcaatgatgagatactgaaccAGGTTTTC i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16455051 109 + 178775436 atgctGAACCAGTATATAttctgcaaatattccaaaatccagaagcatccaaaaaccaaaacactgtTGATTCAAGCATTTCAATGATGAGATACTGAACCAGGTTTTC i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19938147 109 - 48547382 atgctgaaccagtatatattctgcaaatattccaaaatccagaagcgtccaaaaaccaaaatactgctggttcaagcatttcagtgatgagatactgaacTAGGTTTTC i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21298277 107 - 190850796 atgctgaaccaatatatattcagcaaatattccaaaatccagaagagtccaaaaaccaaa--actgctgatctaagcatttcaatcacgagacactgaaccATTCTTTC i calJac3.chr3 C 0 C 0 s mm10.chr5 49277066 32 + 151834684 GTGCTGGA---------------------------GATGCAGA-------------------------------------------ATTAGATGCTATGCC-------T i mm10.chr5 C 0 C 0 e canFam3.chr3 3867716 208 - 91889043 I a score=1252984.000000 s hg38.chr4_KI270790v1_alt 174266 334 + 220246 TGTCTTTTAGAAGATACTGATCTACCTGAGATAAAACTTGAACACCTGAATCTGTTCAAT-ATA-CAGGGTTGACTAGTAATTAAATGCTGAACAATATGGGACAGACAACTTGTACTATCAGAGCTCAAAAAGAAAATAAATCAATATACATTACAGAATGAAGCAGGG---------TTCCA--AGGAAAGAAAATAGGATCTGAACAGGTGTTTAATTGATAAAATGCAATATTTCCTACCTGACCACTCA-AAAAGCCATGGAAAT-TTGCTCCAGGCAGACAACAGGACCCTCTGTT-GGGCTTGGCCAGTGGTTTCTGCAGCAATCGGG-TTGTCTGGACCATTT s panTro4.chr4 21561465 334 + 193495092 TGTCTTTTAGAAGATTCTGATCTACCTGAGATAAAACTTGAGCACCTGAATCTGTTCAAT-ATA-CAGGGTTGACTAGTAATTAAATGCTGAACAATATGGGACAGACAACTTGTACTATCAGAGCTCAAAAAGAAAATAAATCAATATACATTACAGAATGAAGCAGGG---------TTCCA--AGGAAAGAAAATAGGATCTGAACAGGTGTTTAATTGATAAAATGCAATATTTCCTACCTGACCACTCA-AAAAGCCATGGAAAT-TTGCTCCAGGCAGACAACAGGACCCTCTGTT-GGGCTTGGCCAGTGGTTTCTGCAGCAATAGGG-TTGTGTGGACAATTT i panTro4.chr4 C 0 I 1882 s ponAbe2.chr4 21738896 334 + 198332218 TGTCTTTTAGAAGATTCTGATCTACCTGAGATATAACTTGAACACCTGAATCTGTTCAAT-ACA-CAGGGTTGACTAGTAATTAAATGCTGAGCAATATGGGACAGACAACTTGTACTATCAGAGCTC-AAAAGAAAATAAATCAATATACATTACAGAATGAAGCAGGG---------TTCCA--AGGAAAGAAAATAGGATCTGAACAGGTGTTTAATTGATAAAATGCAATATTTCCCACCAGACCACTCA-AAAAGCCATGGAAATATTGCTCCAGGCAGACAACAGGACCCTCTGTT-GGGCTTGGCCGGTAGTTTCTGCAGCAATCTGG-TTGTGTGGACAATTT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20348135 335 - 85365473 TGTCTTTTAGAAGATTCTGATCTACCTGAGATACAATTTGAACACCTGAATCTGTTCAAT-ATA-CAGGGTTGACTAGTAATTAAATGCTGAACAATACGGGTCAGACAACTTGTACTATCAGAGCTCAAAAAGAAAATAAATCAATATATATTACAGAATGAAGCAGGG---------TTCCA--AGGAAAGAAAACAGGATCTGAACAGGTGTTTAATTGATAAAATGCAATATTTCCTACCTGACCACTCA-AAAAGGCATGGAAATATTGCTCCAGACAGACAACAGGACCCTCTGTT-GGGCTTGGCCGGTAGTTTCTGCAGCAATCTGG-TTGTGTGGACAATTT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16815066 336 + 184069350 TGTCATTTAGAAGATCCTGATCTACCTGAGATACAGCTTGAACACCTGAATCTGTTCAAT-ATA-CAGGGTTGACTAGTAATTAAATGCTGAACAATATGGGACAGACAACTTGTACTATCAGAGCTCAAAAAGAAAATAAATCAATATACATCACAGAATGAAGCAGGG---------TTCCA--AGGAAAGAAAATAGGATCTGAACAGGTGTTTAATTGATAAAATGCAACATTTCCTACCTGACCACTCA-AAAAGCCATGGAAATATTGCTCCAGACAGACAACAGGACCCTCTGTT-GGGCTTGGCCGGTAGTTTCTGCAGCAATCTGGATTGTGTGGACAATTT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20864887 336 + 189454096 TGTCATTTAGAAGATCCTGATCTACCTGAGATACAACTTGAACACCTGAATCTGTTCAAT-ATA-CAGGGTTGACTAGTAATTAAATGCTGAACAATATGGGACAGACAACTTGTACTATCAGAGCTCAAAAAGAAAATAAATCAATATACATCACAGAATGAAGCAGGG---------TTCCA--AGGAAAGAAAATAGGATCTGAACAGGTGTTTAATTGATAAAATGCAACATTTCCTACCTGACCACTCA-AAAAGCCATGGAAATATTGCTCCAGACAGACAACAGGACCCTCTGTT-GGGCTTGGCCGGTAGTTTCTGCAGCAATCTGGATTGTGTGGACAATTT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16455160 336 + 178775436 TGTCATTTAGAAGATCCTGATCTACCTGAGATACAACTTGAACACCTGAATCTGTTCAAT-ATA-CAGGGTTGACTAGTAATTAAATGCTGAACAATATGGGACAGACAACTTGTACTATCAgagctcaaaaagaaaataaatcaatatacaTCACAGAATGAAGCAGGG---------ttcca--aggaaagaaaacaggatcTGAACAGGTGTTTAATTGATAAAATGCAACATTTCCTACCTGACCATTCA-AAAAGCCATGGAAATATTGCTCCAGACAAACAACAGGACCCTCTGTT-GGGCTTGGCCGGTAGTTTCTGCAGCAATCTGGATTGTGTGGACAATTT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19938256 337 - 48547382 TGTCATTTAGAAGATCCTGATCTACCTGAGATACAACTTGAACACCTGAATCTGTTCAAT-ATA-CAGGGTTGACTAGTAATTAAATGCTGAACAATATGGGACAGATAACTTGTACTATCAGAGCTCGAAAAGAAAATAAATCAATATACATCACAGAATGAAGCAGGG---------TTCCA--AGGAAAGAAAATAGGATCTGAACAGGTGTTTAATTGATAAAATGCAATATTTCCTACCTGACCACTCA-AAAAGCCATGGAAATATTGCTCCAGACAGACAACAGGACCCTCTGTTGGGGCTTGGCCGGTAGTTTCTGCAGCAATCTGGATTGTGTGGACAATTT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21298384 335 - 190850796 TGTCTTTTAGAAGATTCTGATCTACTTGAGATATAACTTGCACACCTGAATCTGTTCAGT-ATA-CAGGGCTGACTAGTAATTAAATGCTGAACAATATGGGATAGACAATCTGTACTATGAGAGCTCAAAAAGAAAATAAATCAATATACATCACAGAATAAAGCAGGG---------TTCCA--AAGAAAGAAGACAGGATCTGAGCAGGTGTTTAATTGATAAAATGAAACATTTCCCACCTGACCACTCA-AAAAACCATGGATGTATTGCTGGAGACAGACGACAGGACTCTCTGTT-GGGCTTGGTTGGTAGTTTCTGCAGCAACCTTG-TTGTGTGGACAATTT i calJac3.chr3 C 0 C 0 s mm10.chr5 49277098 341 + 151834684 TGTCTATCAGAAGATGCTGAGCACTTTGAGCTCTGACATGAACACCTGACTCTGTTCAAT-AGAGCAGTGCTGATGAGTAATTAAA-GCAGAATAATATGGGAAGG---ACTTGTACTATGAGAGCTCAAAAAGGAATTAAATCAGCAAATTCCGCAGAGTAAAAGAGAGGATAATATCTTCCATGGGGAAGATAAATGAGCTCTGCACAGGTGTTTAATAGAAGAAATGTGACCTTCACTACCTGGACATTCACAAAGGCCAC---AATTTCTCTTCAGCTAAAGAAGAGGACCCTCTGGT-AGTCTTGGCTGGGGGCTTCTACAGCTATCTGG-TCATATGTGAAATTT i mm10.chr5 C 0 C 0 s canFam3.chr3 3867924 303 - 91889043 TGTCTTTTAGAAGATTCAGATCTACTTGAGGTATGACTCTAAAGCCTGAATCTGCTAAATAATA-CAGGGTGGATGAGTAGTTAAATGCTGAACATTATGGGACAGACAACATGTA-TACAAAAGTTCAAAACATAAGAAAATCAGTGCACGTCAGATGGCAAAG-ACAT---------ATCCA--AGGG-----------------GCAGGT---------AGGAAGTGTAAGATCCACGACCTGATTGCTCA-GTAAGCCACACAAGTGTTTCTCTGGACAAAGAATAAAACCTTCTGGT-GGGCTATGTTGGTAGTTTCTGCAACAATGAGG-TAGTATCGGC----- i canFam3.chr3 I 208 C 0 a score=3094480.000000 s hg38.chr4_KI270790v1_alt 174600 877 + 220246 AGCTTTTTAGCAAAACTTCCTGTTCCTACAAATAATCCCACTAATCCTCTCTCTCCCCAGCTGCTTCCTTGCCTTTCCTGCTTGGCTCCCCTCTCATAAGCCTCTTTCTTTCTAATTTTTTCAGAGGAACATATTTTACAGTCCCGTTGCTTCACCTACCTTGCCCATTGTCCTTGCCTAAAATTGTCCTTGACTGAAATAGTAAGAGATAGTTTTCCTCTGCTTTTTGAAATCTTAGCATATGTTG----GTTGGTTG--AGTTAACTGCT------------TCATATTTATTTGCTGTACTGGCAGGTTGACA--GGGCAACTGGGAATCATGAAGAAA-TAGTTCAGCAGAACcacgagactcagctcttaacaagcacttaataaatgttggttgaatgaataaatGGCTATTGTAGTTATTGAAAACTAATACAATTAAAGGCAAGTGAGTTTAAAaatcacagtcatttatataggtacctttctatttattcctaattaccaggaagcataataatgattaggtatttcaATTATTTTTAGTGAAAATTTAATTTGAATAAAACTA------------------------ATAGAACATCCTATAGATAACAGATC-AGTAATAGCGACAA--------ATTTGTTAAACGTGTGCCAGCAACAGAAATAATTGTACAAAGatccccattttacagatgcgatgacccagcttagaggggtcatctaattggtcttcccaattg-----tgaggttaggaattaaaagctggaattccaac-------------acagctctATGCTGTGCTG---TTGCCTCTCAGAAAGATGGCTGGGGGTTGAGCAGAGAGAATAGCTCTCCTGGAACACATT--------TTCAGA-ATATAAAC----TTTTTCAGTTATGATGTAATATATTTATATTATTGTCATTAAGACTATGATGAA s panTro4.chr4 21563681 876 + 193495092 AGCTTTTTAGCAAAACTTCCTGTTCCTACAAATAATCCCACTAATCCTCTCTCTCCCCAGCTGCTTCCTTGCCTTTCCTGCTTGGCTCCCCTCTCATAAGCCTCTT-CTTTCTAATTTTTTCAGCGGAACATATTTTACAGTCCCGTTGCTTCACCTACCTTGCCCATTGTCCTTGCCTAAAATTGTCCTTGACTGAAATAGTAAGAGATAGTTTTCCTCTGCTTTTTGAAATCTTAGCATATGTTG----GTTGGTTG--AGTTAACTGCT------------TCATATTTATTTGCTGTACTGGCAGCTTGACACAGGGCAATTGGGAATCATGAAGAAA-TAGTTCAGCAGAACcacgagactcagctcttaacaagcacttaataaatgttggttgaatgaataaatGGCTATTATAGTTATTGAAAACTAATACAGTTAAAGGCAAGTGAGTTTAAAaatcgcagtcatttatataggtagctttctatttattcctaattaccaggaagcataataatgattaggtatttcaATTATTTTTAGTGAAAATTTAATTTGAATAAAACTA------------------------ATAGAACATCCTATAGATAACAGATC-AGTAATAGCGACAA--------ATTTGTTAAATGTGTGCCAGCAACAGAAATAATTGTACAAAGatccccattttacagattcgatgacccagcttagaggggtcatctaattggtcttcc-aattg-----tggggttaggaat-aaaagctggaattccaac-------------acagctctATGCTGTGCTG---TTGCCTCACAGAAAGATGGCTGGGGGTTGAGCAGAGAGAATAGCTCTCCTGGAACACATT--------TTCAGA-ATATAAAG----TTTTTCAGTTATGATGTAATATATTTATATTATTGTCATTAAGACTATGATGAA i panTro4.chr4 I 1882 C 0 s ponAbe2.chr4 21739230 878 + 198332218 AGCTTTTTAGCAAAACTTCCTGTTCCTACAAATAATCCCACTAATCCTCCCTCTCCCCAGCTGCTTCCTTGCCTTTCCTGCTTGGCTCCCCTCTCATAAGCCTCTTTTTTTCTAATTTTTTCAGAGGAACATATTTTACAGTCTCGTTGCTTCACCTACCTTGCCCGTTGTCCTTGCCTAAAATTGTCCTTGACTGAAATAGTAAGAGAGAGTTTTCCTCTGCTTTTTGAAATCTTAGCATATGTTG----GTTGGTTG--AGTTAACTGCT------------TCCTATTTATTTGCTGTACTGGCAGGTTGACACAGGGCAATTGGGAATCATGAAGGAA-TAGTTCAGCAGAACcacgagactcagctcttaacaagcacttaataaatgttggttgaatgaataaaCGGCTATTATAGTTATTGAAAACTAATACAATTAAAGGCAAGTGAGTTTAAAAATCATAGTCATTTATATAGGTAGCTTTCTATTTATTCCTAATTACCAGGAAGCATAATAATTATTAGGTATTTCAATTATCTTTAGTGAAAATTAAATTTGAATAAAACTA------------------------ATAGAACATCCTATAGATACCAGATC-AGTAATAGCGACAA--------ATTTGTTAAATGTGTGCCAGCAACAGAAATAATTGTACAAAGatccccattttacagatgcgatgacccagcttagaggggtcatctaattggtcttctcagttg-----tggggttaggcat-aaaagctggaattccaac-------------acagctctATGCTGTGCTG---TTGCCTCTCAGAAGGATGGCTGGGGGTTGAGGCGAGAGAATAGCTCTCCTGGAACACATT--------TTCAGA-ATATAAAC----TTTTTCAGTTATGATGTAATATATTTATATTATTGTCATTAAGACTACGATGAA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20348470 878 - 85365473 AGCTTTTTAGCAAAACTCCCTGTTCCTACAAATAATCTCACTAATCCTCTCTCTCCCCAGCTGCTTCCTCACCCTTCCTGCTTGGCTCCCCTCTCATAAGCCTCTTTCTTTCTAATTTTTTCAGAGGAACATATTTTACAGTCTCGTTGCTTCACCTACCTTGCCCATTATTCTTGCCTAAAATTGTCCTTGACTGAAATAGCAAGAGATAGTTTTCCTCTGCTTTTTGAAATCTTAGCATATGTTG----GTTGGTTG--AGTTAACTGCT------------TCATATTTATTTGCTGTACTGGCAGGCTGACACAGGGCAATTGGGAATCATGAAGAAA-TAGCTCAGTGGAACcacgagactcagctcttaacaaacacttaataaatgttggttgaatgaataaatGGCTATTATAGTTATTGAAAACTAATAAAATTAAAGGCAAGCAAGTTTAAAaatcgcagtcatttatataggttgctttctatttattcctaattaccaggaagcataataacgattaggtatttcaATTATCTTTAGTGAAAATTTAATTTGAATAAAACTA------------------------CTAGAACATCTTATAGATACCACATC-AGTAATAGCGACAA--------ATTTGTTAAATGTGTGCCAGCAACAGAAATAATTGTACAAAGatccccattttacagatgtgatgacccagcttagaggggtcatctaattggtcttcccaattg-----tggggttaggaat--aaagctggaattccaac-------------acagctctATGCTATGCTG---TTGCCTCTTAGAAGGATGGCTGGGGGTTGAGCAGAGAGAATAGCTCTCCTGGAACACATT--------TTCATA-ATATAAAC---TTTTTTCAGTTATGATGTAATATATTTATATTATTGTCATTAAGACTATGATGAA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16815402 873 + 184069350 AGCTTTTTAGCAAAACTCCCTGTTCCTACAAATAATCCCACTAATCCTCTCTCTCCCCAGCTGCTTCCTCGCCCTTCCTGCTTGGCTCCCCTCTCATAAGCC----TCTTTCTAATTTTTTCAGAGGAACATATTTTACAGTCTCGTTGCTTCACCTACCTTGCCCATTGTCCTTGCCTAAAACTGTCCTTGACTGAAATAGCAAGAGATAGTTTTCCTCTGCTTTTTGAAATCTTAGCATATGTTG----GTTGGTTG--AGTTAACTGCT------------TCATATTTATTTGCTGTACTGGCAAGTTGACACAGGGCAATTGGGAATCATGAAGAAA-TAGCTCAGCAGAACCACGAGATTCAGCTCTtaacaatcacttaataaatgttggttgaatgaataaatGGCTATTATAGTTGTTGAAAACTAATAAAATTAAACGCAAGTGAGTTTAAAaattgcagtcatttatataggttggtttctatttactcctaattaccaggaagcat-ataatgattaggtatttcaATTATCTTTAGTGAAAATTTAATTTGAATAAAACTA------------------------ACAGAACATCCTATAGATACCAGATC-AGTAATAGTGACAA--------ATGTGTTAAATGTGTGCCAGCAACAGAAATAATTATATAAAGatccccattttgcagatgcgatgacccagcttagaggggtcatctaactggtcttcccaattg-----tggggttaggaat--gaagctggaattctgac-------------acaactctATGCTGTGCTG---TTGCCTCTCAGAAGAATGACTGGGGGTTGAGCAGAGAGAACAGTTTTCCTGGAACACATT--------TTCAGA-ATACAAAC---TTTTTTCAGTTATAATGTAATATATGTATATTATTGTGATTAAGACTATGATGAA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20865223 873 + 189454096 AGCTTTTTAGCAAAACTCCCTGTTCCTACAAATAATCCCACTAATCCTCTCTCTCCCCAGCTGCTTCCTCGCCCTTCCTGCTTGGCTCCCCTCTCATAAGCC----TCTTTCTAATTTTTTCAGAGGAACATATTTTACAGTCTCGTTGCTTCACCTACCTTGCCCATTGTCCTTGCCTAAAACTGTCCTTGACTGAAATAGCAAGAGATAGTTTTCCTCTGCTTTTTGAAATCTTAGCATATGTTG----GTTGGTTG--AGTTAACTGCT------------TCATATTTATTTGCTGTACTGGCAAGTTGACACAGGGCAATTGGGAATCATGAAGAAA-TAGCTCAGCAGAACCACGAGATTCAGCTCTtaacaatcacttaataaatgttggttgaatgaataaatGGCTATTATAGTTGTTGAAAACTAATAAAATTAAAGGCAAGTGAGTTTAAAaattgcagtcatttatataggttggtttctatttactcctaattaccaggaagcat-ataatgattaggtatttcaattatctttagtgaaaatttaatttgaataaaacta------------------------aCAGAACATCCTATAGATACCAGATC-AGTAATAGTGACAA--------ATGTGTTAAATGTGTGCCAGCAACAGAAATAATTATATAAAGatccccattttgcagatgcgatgacccagcttagaggggtcatctaactggtcttcccaattg-----tggggttaggaat--gaagctggaattctgac-------------acaactctATGCTGTGCTG---TTGCCTCTCAGAAGAATGACTGGGGGTTGAGCAGAGAGAACAGTTCTCCTGGAACACATT--------TTCAGA-ATACAAAC---TTTTTTCAGTTATAATGTAATATATGTATATTATTGTGATTAAGACTATGATGAA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16455496 877 + 178775436 AGCTTTTTAGCAAAACTCCCTGTTCCTACAAATAATCCCACTAATCCTCTCTCTCCCCAGCTGCTTCCTCGCCCTTCCTGCTTGGCTCCCCTCTCATAAgcctctttctttctaattttttcaggGGAACATATTTTACAGTCTTGTTGCTTCACCTACCTTGCCCATTGTCCTTGCCTAAAACTGTCCTTGACTGAAATAGCAAGAGATagttttcctctgctttttgaAATCTTAGCATATGTTG----GTTGGTTG--CGTTAACTGCT------------TCATATTTATTTGCTGTACTGGCAGGTTGACACAGGGCAATTgggaatcatgaagaaa-tagctCAGCAGAACCACGAGATTCAGCTCTTAACaatcacttaataaatgttggttgaatggataaatggcTATTATAGTTattgaaaactaataaaattaaaGCCAAGTGAGTTTAAAAATTGCAGTCATTTATATAGGTTGGtttctatttattcctaattaccAGGAAGCAT-ATAATGATTAGGTATTTCAATTATCTTTAGTGaaaatttaatttgaataaaaCTA------------------------ACAGAACATCCTATAGATACCAGATC-AGTAATAGTGACAA--------ATTTGTTAAATGTGTGCCAGCAACAGAAGTAATTATACAAagatccccattttgcagatgcgATGACCCAGCTTAGAGGGGTCATCTAACTGGTCTTTCCAATTG-----TGGGGTTAGGAAT--GAAGCTGGAATTCTGAC-------------ACAGCTCTATGCTGTGCTG---TTGCCTCTCAGAAGGATGACTGGGGGTTGAGCAGAGAGAACAGCTCTCCTGGAACACATT--------TTCAGA-ATACAAAC---TTTTTTCAGttataatgtaatatatgtatattattgtgATTAAGACTATGATGAC i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19938593 877 - 48547382 AGCTTTTTAGCAAAACTCCCTGTTCCTACAAATAATCCCACTAATCCTCTCTCTCCCCAGCTGCTTCCTCGCCCTTCCTGCTTGGCTCCCCTCTCATAAGCCTCTTTCTTTCTAATTTTTTCAGAGGAATATATTTTACAGTCTCGTTGCTTCACCTACCTTGCCCATTGTCCTTGCCTAAAACTGTCCTTGACTGAAATAGCAAGAGATAGTTTTCCTCTGCTTTTTGAAATCTTAGCATATGTTG----GTTGGCTG--AGTTAACTGCT------------TCATATTTATTTGCTGTACTGGCAGGTTGACACAGGGCAATTGGGAATCATGAAGAAA-TAGCTCAGCAGAACCACGAGATTCAGCTCTtaacaatcacttaataaatgttggttgaatgaataaatGGCTATTATAGTTATTGAAAACTAATAAAATTAAAGGCAAGTGAGTTTAAAaattgcagtcatttatataggttggtttctatttattcctaattaccaggaagcat-ataatgattaggtatttcaattatctttagtgaaaatttaatttgaataaaacta------------------------aCAGAACATCCTATAGATACCAGATC-AGTAATAGTGACAA--------ATTTGTTAAATGTGTGCCAGCAACAGAAATAATTATACAAAGatccccattttgcagatgcgatgacccagcttagaggggtcatctaactggtcttcccaattg-----tggggttaggaat--aaagctggaattctgac-------------acagctctATGCTGTGCTG---TTGCGTCTCAGAAGAATGACTGGGGGTTGAGCAGAGAAAACAGCTCTCCTGGAACACATT--------TTCAGA-ATATAAAC---TTTTTTCAGTTATAATGTAACATATGTGTATTATTGTCATTGAGACTATGATGAA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21298719 851 - 190850796 AGCTTTTTAGCAATACTTCCTGTTCATACAAATAATCCCACTAATCCTTTCTCTTCCCAGCTGCTTCCTCACCCTTCCTGCTTTGCTCCCCTCTCATAAGCCTCTTTCTTTCTAATGTTTTCAGCGGAACATATTTTACAGTCTTGTTG---CACTTATC-TGACCATTGTCCTTGCCTAAAATTGTCCTTGACTGACATAGCCAGAGACAGTTTTCTTCTGCTTTTTGAAATCTTAGCATATGTTG----GTTGGTTG--AGTTAACTGCC------------TGATATTTATTTGCTGTACTGGCAGGTTGACACAGGGCAGTTGGGAATCATGAAGAAA-TAGCTCAGCAGAAccacaagactcagctcttaacaagcacttaataaatgttggtcaaatgaatgaatGGC------AATTATTGAAAAGTAATAAAATTAAAGACAAGTGAGTTTAAAAATTGCAGTCATTTATATAGGTTTCTTTCTATTTATTCCTAATTACCAGGAAGCATAATAATGATTAGGTATTTCAATTATCTTCAGCGAAAATTTAATTTCAATAAAACAA------------------------ATAGAACATCCTATAGATACCAGATC-AGTAATAGTGATAA--------ATTTG-TAAATGTGTGCTAGCAACAGAAATATTTGTATAGAGatccccattttacagatgtgatgacccagcttaggggggtcatctaattggtcttcccaaTTG-----TGGGGTAAAGGAT--AAAG------------------------------CTCTATGCTGTGCTG---TTGCCTCTCAGAAGGACAGCT-GGGGTTGAGCAGAAAGAACAGTTCTCTTGGAACACATT--------TTCAGACATATGATT--TTTCTTTCTGTCATAATGTAATATATTTATATTATTGTCATTAAGACTATGATGAA i calJac3.chr3 C 0 C 0 s mm10.chr5 49277439 858 + 151834684 AGCTTTCAAAAACAGTATCCTTTACATACAAATAATGTCATTGATTCT-----TCTATAGCTCCTCGCTTATAAACTTCATTTGACATATCTCTTTTCACCCTCTCCCTT-----------------------GTGTTCAAGTTTATTGCCTCTTTTTGGCTCTCCACTGTCCTTGACT---ACTGTTGGTGA---GAATCACAAGAGAAATCTCTCTTCTGTCTTATGAAATCATAGCAAATGTAGCAGAATTACCTGCCAGTTAACTGCCCCATTAACCTCGCCATACTTACTTGCTGTATGAATACAGCAATGCAAGGCAGTGGGAAACCAGTCGGAAACTAGCTCA-CAAAGCCACAAAAGTCAGCTTTTAACATATATTTAATACATTTTACTTAAATGAATAAAGGGAGATAATAGTTATT----ATTGATATAA-TAAAGACAA-TGAGTTT-AAAATTGCAGTTTTTTATACAACTCTCTTTGTAATTACTGCAAACCACTA-GAAGTAAAATCATGATTA-ATATTT-AGTTTTCATTGCTGAAATTTTAAGTTGAATAAAATGA------------------------GCAGGATAACCTATAGTTCCTAGATTAAATAATATCTTCAAAAGTAAGTACTCGTTGAATGCTTCATGGCAACAGAGATATACA-AGAAATATATCTGTCCTATCCAAAATATGCCTCTCCCTACAGCAGTAGACTGATGG-----CCCAGCTG-----TGTGAC-AGGGCC--AAAGCTAGAAGTTCGGTCAAAGGCTGCTCAACCTCCCCACG-TGTGCTG---CTACACTGCAGGAG-----TTCAGGAGTTAGCAGAGAG--CTGTTCTCCTGAAACATATTTTTTGGAATTCAAC-ATATGACT---TTTTCT---------TATCATAAAAATCTATTCTTGTCCTTAACATTGTGATAAA i mm10.chr5 C 0 I 557 s canFam3.chr3 3868227 895 - 91889043 ---------------ATTCTTCCTTCTACAAATAATCCCACTGACCCTCTCTCTCC-CAGCTGCTTCCTCACCTTCCTTCCTTGGCTCCCCCATTACCAACC--CTTCTCTCTACTTCCTTCAGAGGAACATGTCTTACAGGCTTACTACTCCCGCTAGGTTGCCCATGGTGCATGCCT------CTTCTTGACTAAAACCACATAGTGTAACTCCCCTCTACTTTTGGAAATCTTAGCACATGTTG----CTTTGCTG--AGTTAACCATC------------CTGCATTTACTGGCTCTACTGGCAGGGTAACATAGGGCAGGAAGGACTCTCGAATAAA-TAGTTTA--TAAACcacaaggctcagcccttaacaagcacttaataaacgttagttgaatgaataaatGGCAATTATAGTTATTGAAAACTAA------TAAAGGCAAAGGAGTTTAAAaattgcagtcgtttatacaggttacttcctatttattcctaattattaggcagcacaatgatgattaggta-tCCAATTACCTTTGGGAAAAATTCAATTTGAAACAAACAAACAAAAGAAACCCCGAAAACAAACACAGAACATCCTATAGACACCAGATC-GGTAATAATGACAAAAGTTACCATCTGCTGAaagcttcacaacaacagaactatatagaggaatatctccattttacagatggattgatcccactccaagcagccaggtgact----ttcccaaCTGTAGGATGGGATTGGGGCT--TGGGCTGAAATGCCAACATGAGGCTCCC--GCCTCTTTCCTCTGTGCCTGCCTTGCCCTCCAGAAGCACAGCTAGGTTCTGGGCAGAGACAACAGCTCTCCTGATACACATT--------CTCAGA-ATTCTTTTTTTTTTTTTCACTTTTAATATAATATGTTTATGTTATGGTCTGTAAGACTGTGATGAA i canFam3.chr3 C 0 C 0 a score=336310.000000 s hg38.chr4_KI270790v1_alt 175477 110 + 220246 AAGACATTAGAGGAAGCAAAACAAAGCCTGATAGTT---CAGATATGAGATAAGTAAAGAAGGGTGTCAAATGACGAAATGCTTTTTATGATGATATAGA--ACGATGAAATGCT s panTro4.chr4 21564557 112 + 193495092 AAGACATTAGAGGAAGCAAAACAAAGCCTGATAGTT---CAGATATGAGATAAGTAAAGAAGGGTGTCAAATGACGAAATGCTTTTTATGATGATATATATAACGATGAAATGCT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21740108 112 + 198332218 AAGGCATTAGAGGAAGCAAAACAAAGCCTGATAATT---CGGATATGAGACAAGTAAAGAAGGGTGTCAAATGATGAAATGCTTTTTATGATGATATATATAACGATGAAATGCT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20349348 112 - 85365473 AAGACATTAGAGGAAGCAAAACAAAACCTGATAGAT---TGGATATGAGATAAGTAAAGAAGGGTGTCAAATGATGAAATGCTTTTTATGATGATATATATAATGATGAAATGCT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16816275 112 + 184069350 AAGACATTAGAGGAAGCAAAACAAAGCCTAATAGTC---CGGATATGAGACAAGTAAAGAAGGGTGTCAAGTGACGAAATGCTTTTTATGATGATACATACAACGATGAAATGCT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20866096 112 + 189454096 AAGACATTAGAGGAAGCAAAACAAAGCCTAATAGTC---CGGATATGAGACAAGTAAAGAAGGGTGTCAAGTGACGAAATGCTTTTTATGATGATACATACAACGATGAAATGCT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16456373 112 + 178775436 AAGACATTAGAGGAAGCAAAACAAAGCCTAATAGTC---CGGATATGAGACAAGTAAAGAAGGGTGTCAAGTGACGAAATGCTTTTTATGATGATATATACAACAATGAAATGCT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19939470 109 - 48547382 AAGAC---AGAGGAAGCAAAACAAAGCCTGATAGTC---CGGATATGAGACAAGTAAAGAAGGGTGTCAAGTGACGAAATGCTTTTTATGATGATATATACAATGATGAAATGCT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21299570 95 - 190850796 AAGACATTAGAGGAAGCAAAACAAATCCAGATAGTT---CAGATATGAGACAACTAAAGAAGGATGTCAAATGATTAAATGCTCTCTATGAGTTTAT-----------------T i calJac3.chr3 C 0 C 0 s canFam3.chr3 3869122 98 - 91889043 AAGACATTAGAGGAAGCACAACAGAGCCAGAGAGGGAGACAGACATGAGACACGTAAAGGAGGGGGCCAAATGGTGGAAGGCTTTACGTGAGTTTATT----------------- i canFam3.chr3 C 0 C 0 e mm10.chr5 49278297 557 + 151834684 I a score=1096235.000000 s hg38.chr4_KI270790v1_alt 175587 316 + 220246 CCCTTATGCCAAACCTTGGCACAGTACTTCTATGCCCACCCTGGCCACTGATTCAGTCCTACTCTCATATTTGTTCTTCCTGAAGTTGGAAAATAATGATTCACTGGCCATCCTCAGACATTATTACATGTTGATCTACTGCAGGGTTTTATTCACCCTCCTTT------AAAAACATAAAGTGAACATTAGCCCCAAATAAAGAACACCTTGAGACATCCTGATGTCACTGCTATATCTCTATTAGGAAGGAGAAATAAATAACGTTAAGCATAGAGCCATATTTTGTAGGGACTTGCTAAAAACTGA-TTTGTTGGTAAAA s panTro4.chr4 21564669 316 + 193495092 CCCTTATGCCAAACCTTGGCACAGTACTTCTATGTCCACCCTGGCCACTGATTCAGTCCTACTCTCATATTTGTTCTTCCTGAAGTTGGAAAATAATGATTCATTGGCCATCCTCAGACATTATTACATGTTGATCTACTGCAGGGTTTTATTCACCCTCCTTT------AAAAACATAAAGTGAACATTAGCCCCAAATAAAGAATACCTTGAGACATCCTGATGTCACTGCTATATCTCTATTAGGAAGGAGAAATAAATAACGTTAAGCATAGAGCCATATTTTGTAGGGACTTGCTAAAAACTGA-TTTGTTGGCAAAA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21740220 316 + 198332218 CCCTTACTCCAAACCTTGGCACAGTACTTCGATGCCCACCCTGGCCACTGATTCAGTCCTACTCTCATATTTGTTCTTCCTGAAGTTGGAAAATAATGATTCATTGGCCATCCCCAGACATTATTACATGTTGATCTACTGCAGGGTTTTATTCACCCTCCTTT------AAAAACATAAAGTGAACATTAGCCCCAAATAAAGAACACCTTGAGACATCCTGATGTCACTACTATATCTCTATTAAGAAGGAGAAATAAATAACGTTAAGCATAGAGCCATATTTTGTAGGGACTTGCTAAAAACTGA-TTTGTTGGCAAAA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20349460 315 - 85365473 CCCTTATGTCAAACCTTGGCACAGTACTTCTATGCCCACCCTGGCCACTCATTCAGTCCTACTCTCATATTTGTTCTTCCTGAAGTTGGAAAATAATGATTCATTGGCCATCCTCAGACCTTATTACATGTTGATCTACTGCAGGGTTTTATTCACCCCCCTTT------AAAAACATAAACTGAACATTAGCCCCAAATAAAGAACACCTTGAGACATCCTGATGTGACTGCTATATCTCTATTAGGAAGGAGAAATAAATAATGTTAAGCATAGAGCCATATTTTGCAGGGACTTGCTAAAAACTGA-TTTGTTGGC-AAA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16816387 316 + 184069350 CCCTTATGCCAAACCTTGGCACAGTCCTTCTATGCCCACCCTGGCTACTCATTCAGTCCTACTCTCAGATTTGTTCTTCCTGAAGTTGGAAAATAATGATTCATTGGCCATCCTCAGCCATTATTATATGTTGATTCACTGCAGGGCTTTATTTGCCCTCCTCT------AAAAACATAAAGTGAACATTAGCCCCAAATAAAGAATATCTTGGGACATCCTGATGCCACTGCTATATCTCTATTAGGCAGGAGAAATAGATAACCTTAGGCACAGAGCCATATTTTGCAGGGACTTGCTAAAAACTGA-TTTGTTGGCAAAA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20866208 316 + 189454096 CCCTTATGCCAAACCTTGGCACAGTCCTTCTATGCCCACCCTGGCTACTCATTCAGTCCTACTCTCAGATTTGTTCTTCCTGAAGTTGGAAAATAATGATTCATTGGCCATCCTCAGCCATTATTATATGTTGATTCACTGCAGGGCTTTATTTGCCCTCCTCT------AAAAACATAAAGTGAACATTAGCCCCAAATAAAGAATATCTTGGGACATCCTGATGCCACTGCTATATCTCTATTAGGCAGGAGAAATAGATAACCTTAGGCACAGAGCCATATTTTGCAGGGACTTGCTAAAAACTGA-TTTGTTGGCAAAA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16456485 316 + 178775436 CCCTTATGCCAAACCTTGGCACAGTCCTTCTATGCCCACCCTGGCCACTCATTCAGTCCTACTCTCAGATTTGTTCTTCCTGAAGTTGGAAAATAATGATTCATTGGCCATCCTCAGCCATTATTATATGTTGATTCACTGCAGGGCTTTATCTGCCCTCCTCT------AAAAACATAAAGTGAACATTAGCCCCAAATAAAGAATATCTTGGGACATCCTGATGCCACTGCTATATCTCTATTAGGCAGGAGAAATAGATAACCTTAGGCACAGAGCCATATTTTGCAGGGACTTGCTAAAAACTGA-TTTGTTGGCAAAA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19939579 316 - 48547382 CCCTTATGCTAAACCTTGGCACAGTCCTTCTATGCCCACCCTGGCTACTCATTCAGTCCTACTCTCAGATTTGTTCTTCCTGAAGTTGGAAAATAATGATTCATTGGCCATCCTCAGCCATTATTATATGTTGATTCACTGCAGGGCTTTATTTGTCCTCCTCT------AAAAACATAAAGTGAACATTAGCCCCAAATAAAGAATATCTTGGGACATCCTGATACCACTGCTATATCTCTATTAGGCAGGAGAAATAGATAATGTTAGGCATAGAGCCATATTTTGCAGGGACTTGCTAAAAACTGA-TTTGTTGGCAAAA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21299665 320 - 190850796 CCCTTATGCCAAACATTGGCACAGTCCTTCTGTGCCCACCCTGGCCATTCATTCAATCCTGCTCCCAGATTTGTTTTTCCTAAAGTTGGAAAACAGTGATTCATTGGCCATCCTCA--CCATATTATATGTTGATCTGCTGCAGGGTTTTATTCACCCTCCTTTTTTTTAAAATTCATAAAGTGAACATTAGCCTCAAATAAAGAACATCTTGAGACACCCTGATGCCACTGCTATATCTCTATTAGGCAGAAGAAATAGATAACATTAGGCACAGAGCCATATTTTGCAGGGACTAGCTAAAAATTGA-TTTGTTGGCAAAA i calJac3.chr3 C 0 C 0 s mm10.chr5 49278854 284 + 151834684 CCCTAACACC--GCCTTAGCACAATCCTTTTCCTACAGTCATGGACATTTATTCAGCTCTCCCTTGA---TCATTCTCTCTGAAGTT---AAACAGTGACAAAGAGCAGACTCTCAGATGTTGCTGAATGCTTATCAG-----------TAGCTACTCTCCTTT------TAAAACACAGAGATGGTCCCAGTCCCCGCAAATGAACATTTTGAAATACCCTGATATTCCTAAAATATTTCTATGAGGCAGGAAGAAGGAATGCTATT----ATAGAG--ATACTCTG-AAAGACTTGATAAAA-------CTGCTTGTAAAA i mm10.chr5 I 557 I 14 s canFam3.chr3 3869220 299 - 91889043 TCCCTGAGC--AAACTTGGTACATTTCTCCT---CCCACCCTGGCCATGCATCCAGTTCT---CTCTGACTCACTTCCCCC----TTTGAAAATCATGATT-ATTGCCCCTCCTCAGCCAGTCTGAAGTATTGATCTCCTTCACAGTCCTAAGCGTTCACCTTT------AAA-----AAACTAAACAGAGGTCCCAAAGAGAAAACATTTTGAGACATTCTGATGTTATTGCGGTATCTCTATCAGACAGGAGAAATGGATAGAGTTAGGCATAGAGCCATCCATTGCAGAGGCTTGATAAAAACTAAGCTTGTTTATCAAA i canFam3.chr3 C 0 C 0 a score=96241.000000 s hg38.chr4_KI270790v1_alt 175903 48 + 220246 ----CTAGTTTATATTGCAAatatacatata--tatgtatatatata---catatat s panTro4.chr4 21564985 50 + 193495092 ----CTAGTTTATATTGCAAatatacatata--tatgtatatatatata-catatat i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21740536 48 + 198332218 ----CTAGTTTATATTGCAAatatacatata--tatgtatatatata---cgtatat i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20349775 48 - 85365473 ----CTAGTTTATATTGTAAatatacatata--tatttatatattta---tatatat i nomLeu3.chr20 C 0 I 3 s rheMac3.chr5 16816703 51 + 184069350 ----CTAGTTTATATTGCatatatatgtata--tgtgtgtgtatatacattgtacat i rheMac3.chr5 C 0 I 5 s macFas5.chr5 20866524 53 + 189454096 ----CTAGTTtatattgcatatatatgtatatgtgtgtgtgtatatacattgtacat i macFas5.chr5 C 0 I 7 s papAnu2.chr5 16456801 51 + 178775436 ----CTAgtttatattgcatatatatgtatg--tgtgtgtgtatatacattgtacat i papAnu2.chr5 C 0 I 7 s chlSab2.chr27 19939895 51 - 48547382 ----TTAGTTtatattgcatatatatgtata--tgtgtgtgtatatacattgtacat i chlSab2.chr27 C 0 I 3 s calJac3.chr3 21299985 47 - 190850796 ----CTGGTATATACTGCAAA-AAatatata--tgtgtgtatatata---tatatat i calJac3.chr3 C 0 I 316 s canFam3.chr3 3869519 21 - 91889043 TTGGTTAGCATATACTGCAAA------------------------------------ i canFam3.chr3 C 0 C 0 e mm10.chr5 49279138 14 + 151834684 I a score=24074.000000 s hg38.chr4_KI270790v1_alt 175951 13 + 220246 tatatat-atat-tt s panTro4.chr4 21565035 13 + 193495092 tatatat-atat-tt i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21740584 15 + 198332218 tgtatataatatata i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20349826 13 - 85365473 tatttat-atat-tt i nomLeu3.chr20 I 3 I 143 s rheMac3.chr5 16816759 13 + 184069350 tgtgtat-atat-TG i rheMac3.chr5 I 5 C 0 s macFas5.chr5 20866584 13 + 189454096 tgtgtat-atat-tg i macFas5.chr5 I 7 C 0 s papAnu2.chr5 16456859 13 + 178775436 tgtgtat-atat-tg i papAnu2.chr5 I 7 C 0 s chlSab2.chr27 19939949 13 - 48547382 tgtgtat-atat-TG i chlSab2.chr27 I 3 C 0 s calJac3.chr3 21300348 13 - 190850796 tatgtat-atat-gg i calJac3.chr3 I 316 I 7 e mm10.chr5 49279138 14 + 151834684 I e canFam3.chr3 3869540 0 - 91889043 C a score=27977.000000 s hg38.chr4_KI270790v1_alt 175964 52 + 220246 tatattatatatatatatata------CACACACACATACGTAAATATACACATCAA-----------------C s panTro4.chr4 21565048 54 + 193495092 tatattatatatatatatata----tgcacacacacatacataaatatacacatCAA-----------------C i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21740599 56 + 198332218 tatataatatatatttatataa--atttatatacacatacataaatataCACACCAA-----------------C i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20349982 52 - 85365473 tattttatatatatatatata------tatatatacatacataaatataCACATCAA-----------------C i nomLeu3.chr20 I 143 C 0 s rheMac3.chr5 16816772 41 + 184069350 -----Tacat------acaca------cacacacacacacacacacacaAATCTCAG-----------------T i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20866597 33 + 189454096 -----tacat--------------------acacacacacacacacacaaacCTCAG-----------------T i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16456872 35 + 178775436 -----tacat------------------acacacacacacacacacacacacctcag-----------------t i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19939962 47 - 48547382 -----TACATacacacacaca------cacacacacacacacacacacacCCCTCAA-----------------T i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21300368 74 - 190850796 tata-tacacacatatatatagctatatatatacacacacatatatatggatatatatatgtatgtatatatCTC i calJac3.chr3 I 7 C 0 s canFam3.chr3 3869540 12 - 91889043 ----------------------------------------------AAATATAGCAG-----------------C i canFam3.chr3 C 0 C 0 e mm10.chr5 49279138 14 + 151834684 I a score=503838.000000 s hg38.chr4_KI270790v1_alt 176016 138 + 220246 GATGATCTCTGTCATGGTCAGTTGGACT----TTTCTTCCACAGTTAAGGGAAGCTCCTCAGATCT----TACCTTCC-------CAAGC------CCACAAATGTATCCCAATACTGGAAAAACAGTGTTGGAAAGAAAATAAACTTCATCCAAGAAA s panTro4.chr4 21565102 138 + 193495092 GATGATCTCTGTCATGGTCAGTTGGACT----TTTCTTCCACAGTTAAGGGAAGCTCCTCAGATCT----TACCTTCC-------CAAGC------CCACAAATGTATCCCAATACTGGAAAAACAGTGTTGGAAAGAAAATAAACTTCATCCAAGAAA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21740655 138 + 198332218 GATGATCTCTGTCATGGTCAGTTGGACT----TTTCTTCCACAGTTAAGGGAAGCTCCTCAGATCC----TACCTTCC-------CAAGC------CCACAAATGTATCCCAATACTGGAAAAACAGTATTGGAGAGAAAATAAACTTCATCCAAGGAA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20350034 138 - 85365473 GATGATCTCTGTCATGGTCAGTTGGACT----TTTCTTCCACAGTTAAGGGAAGCTCCTCAGATCT----TACCTTCC-------CAAGC------CCACAAATGTATCCCAATACTGGAAAAACAGTGTTGGAGAGAAAATAAACTTCATCCAAGAAA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16816813 138 + 184069350 GATGACCTCTGTCATGGTCAGTTGGACT----TTTCTTCCACAGTTAAGGGAAGTTCCTCAGATCT----TATCTTCC-------CAAGC------CCACAAAAATATCCCAAGACTGGAAAAACAGTGTTAGAGAGAAAATAAACTTCGCCCAAGAAA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20866630 138 + 189454096 GATGACCTCTGTCATGGTCAGTTGGACT----TTTCTTCCACAGTTAAGGGAAGTTCCTCAGATCT----TATCTTCC-------CAAGC------CCACGAAAATATCCCAAGACTGGAAAAACAGTGTTGGAGAGAAAATAAACTTCGCCCAAGAAA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16456907 138 + 178775436 GATGACCTGTGTCATGGTCAGTTGGACT----TTTCTTCCACAGTTAAGGGAAGTTCCTCAGATCT----TATCTTCC-------CAAGC------CCACAAAAATATCCCAAGACTGGAAAAACAGTGTtggagagaaaataaacttcGTCCAAGAAA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19940009 138 - 48547382 GATGACCTCTGTCATGGTCAGTTGGACT----TTTCTTCCACAGTTAAGGGAAGCTCCTCAGATCT----TACCTTCC-------CAAGC------CCACAAAAATATCCCAAGACTAGAAAAACAGTGTTGGAGAGAAAACAAACTTCATCCAAGAAA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21300442 137 - 190850796 GATGATTTCTGTCATGGTCAGTTGAACT----TTT-TTTCACAGTTCAGGGAAACGCCTCTGATCT----TACCTTCC-------CAAGC------CCACAAAGGTATCCCAATACTAGAAAAACAGTGTTGGAGAGAAAATAAACTTTATCCAAGAAA i calJac3.chr3 C 0 C 0 s mm10.chr5 49279152 149 + 151834684 GATAAATTCTACTTTGGTTAATTGGACTTTGCTTTTTTCTGCAATAAAGGGCAGTTCCTCAGAACTCAGATACATACT-------AAAGCATGCATTTCCAAAAAGACCCTATTGGTGCCAGAATAATTTGGG---GAAAATACACATTAGCTAGGAAA i mm10.chr5 I 14 I 2 s canFam3.chr3 3869552 136 - 91889043 GCTGATTTCTATCATGGCCAGGTGGACTTTGCTTTCTTCCGCAAGCAAGGGCAGCTCCTCAGATCT----TGGCCTCCCTGCCCACCAAC------CCACCATTGTATCCCAACACTGGAAAA-------------GAAAATAGACTTTATCAAAGAAA i canFam3.chr3 C 0 C 0 a score=1222985.000000 s hg38.chr4_KI270790v1_alt 176154 403 + 220246 AGATGTtgatatggtttggatgttttgtcccctccaaatctcatgttgaaatgtgat-cccagtgttggaggtggtggctagtgggagttgtttggatcatggggctagatccctcatgaatggcttggtgccctccccagtgtaatgagttactgacagatctgattgttaaaaagaatctgggacctcctctcctcttgcttcctgtcttgccatgtgacacatctgctcgcctttcactttccaccatgattgtaagcttcctgaggcctcaccagaagccaagaagatactggtgcaatacttgtacagcctgcagaaccgtatgtcaagtaaatattttttctttataaattacccagcctcaggtattcctttacagcaatgcaaaacagagtaacac s panTro4.chr4 21565240 403 + 193495092 AGCTGTtgatatggtttggatgttttgtcccctccaaatgtcatgctgaaatgtgat-cccagtgttggaggtggtggctagtgggagttgtttggatcatagggctagatccctcatgaatggcttggtgccctccccagtgtaatgagttactgacagatctgattgttaaaaagaatctgggacctcctctcctcttgcttcctgtcttaccatgtgacacatctgctcgcctttcactttccaccatgattgtaagcttcctgaggcctcaccagaagccaagaagatactggtgcaatacttgtacagcctgcagaaccgtacgccaagtaaatattttttctttataaattacccagcctcaggtattcctttacagcaatgcaaaacagagtaacac i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21740793 402 + 198332218 AGCTGTtgatatggtttggatgttttgtcccctccaaatctcatgttgaaatgtgat-cccagtgttggaggtggtggctagtgggagttgtttggatcatggggctagatccctcatgaatggcttggtgccctccccaacgtaatgagttactgacagatctgattgctaaaaagaatctgggacctcctctcctcttgcttcctctcttgccatgtgacacatctgctcgcctttcactttccaccatgattgtaagcttcctgaggcctcaccagaagccaagaagacactggtgcaatacttgtacagcctgcagaaccgtacaccaagtaaata-tttttctttataaattacccagcctcaggtattcctttacagcaatgcaaaacagagtaacac i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20350172 404 - 85365473 AGCTGTtgatatggtttggatgttttgtcccctccagatctcatgttgaaatgtgatccccagtgttggaggtggtggctggtgggaagtgtttggatcatggggctagatccctcatgaatggcttggtgccctccccagtgtaatgagttactgacagatctgattgttaaaaagaatctgggacctcccttcctcttgcttcctctcctgccatgtgacacatctgcttgcctttcactttccaccatgattataagcttcctgtggcctcaccagaagccaagaagatactggtgcaatacttgtacagcctgcagaaccgtacgccaggtaaatattttttctttataaattactcagcctcaggtattcctttatagcaatgcaaaacagagtaacac i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16816951 404 + 184069350 AGCTGTtgatatggtttggatgttctgttccctccaaatcacatgttgaaatgtgatgcccagtgttggagatggtgcctggtgggaggtgtttggatcatgggggtagatccctcatgaatgacttggtgccttccccagtgtaatgagttactgacagatctgattgttaaaaagaatctgggacctcccctcatctagcttcctctcttgccatgtgacacatctgctcgactttcactttccaccatgattgtaagcttcctgaggcatcaccagaagccaggcagatactggtgcaatacttgtacagcctgcagaaccatacgccaagtaaatcttttgtctttataaattacccagcctctggtattcctttacagcaatgcaaaacagagtaacac i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20866768 404 + 189454096 AGCTGTtgatatggtttggatgttctgttccctccaaatcacatgttgaaatgtgatgcccagtgttggagatggtgcctggtgggaggtgtttggatcatgggggtagatccctcatgaatgacttggtgccttccccagtgtaatgagttactgacagatctgattgttaaaaagaatctgggacctcccctcatctagcttcctctcttgccatgtgacacatctgctcgactttcactttccaccatgattgtaagcttcctgaggcatcaccagaagccaggcagatactggtgcaatacttgtacagcctgcagaaccatacgccaagtaaatcttttgtctttataaattacccagcctctggtattcctttacagcaatgcaaaacagagtaacac i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16457045 404 + 178775436 agctgttgatatggtttggatgttctgttccctccaaatcacatgttgaaatgtgatgcccagtgttggagatggtgcctggtgggaggtgtttggatcatgggggtagatccctcatgaatgacttggtgccttCCCCAGTGTAATGAGTTACTGACagatctgattgttaaaaagaatcTGGGACCTCCCCTCATCtagcttcctctcttgccatgtgacacatcTGCTCGactttcactttccaccatgattgtaagcttcctgaggcctcaccagaagccaggcagataCTGGTGCAatacttgtacagcctgcagaaccatacgCCAAGTAAAtcttttgtctttataaattacccagcctctggtattcctttacagcaatgcaaaacagaGTAACAC i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19940147 404 - 48547382 AGCTGTtgatatggtttggatgttctgttccctccaaatcacaggttgaaatgtgatgcccagtgttggagatggtgcctggtgggaggtgtttggatcatgggggtagatccctcatgaatgacttggtgccctccccaatgcaatgagttactgacagatctgattgttaaaaagaatctgggacctcccctcatctagcttcctctcttgccatgtgacacatctgctcgcctttcactttccaccatgattgtaagcttcctgaggcctcatcagaagccaggcagatactggtgcaataattgtacagcctgcagaaccatatgccaagtaaatcttttgtctttacaaattacccagcctcaggtattcctttacagcaatgcaaaacagagtaacat i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21300579 403 - 190850796 AGCTGTtgatatggtttggatgttttgtcccccccagatcttatgttgaaatgtaatccccaatgttggaggtagggcctgttgggaggtgtttgggtcatgggggtgtatccctcatgaatggcttggtgccctctccaatgtaatgagttactgaaaggtctgattgttaaaaagaatctgagacctcccctcctcttgcttcctctcttgccatgtgacacatctgctagcccttcactttccaccatgattgtaagcttcctgaggcctcaccagaagccaaacagatactagtgcaatacttgtatagtttgcagaaccgtataccaaataaagc-tctttctttataaattacccagcctcaggtattcctttacagcaacacaaaacaaagtaacac i calJac3.chr3 C 0 C 0 e mm10.chr5 49279301 2 + 151834684 I e canFam3.chr3 3869688 0 - 91889043 C a score=5612.000000 s hg38.chr4_KI270790v1_alt 176557 2 + 220246 aG s panTro4.chr4 21565643 2 + 193495092 aG i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21741195 2 + 198332218 aG i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20350576 2 - 85365473 aG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16817355 2 + 184069350 aG i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20867172 2 + 189454096 aG i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16457449 2 + 178775436 AG i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19940551 2 - 48547382 aG i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21300982 2 - 190850796 aA i calJac3.chr3 C 0 C 0 s canFam3.chr3 3869688 2 - 91889043 AT i canFam3.chr3 C 0 C 0 e mm10.chr5 49279301 2 + 151834684 I a score=1689079.000000 s hg38.chr4_KI270790v1_alt 176559 486 + 220246 CCATCAATGTGCCTAACAAACACAAACCATAGCCGTATCTCACTGAGTTGTAATAACATCTTCCCATAATAACAAACATCACATTATTTTCAAATATCATTTAATTTAGCTGATTATAATGACATTCTCTCAGAATACAGAGTCAGTTTGTTTGAATGTATAGGTTTACTTTACTTCTGGAATGTAAAAAA--ACATACAGAGAAATATTTGAGAGAAGTTTTACTGTCAAAGTAAAAGATAAACAATGATAGCAAACGATGTGGTAGAATGAT---AGGAACCTCTGCATGACCCACAGATATGATTAGCTTGCTCATGCCACTTTCAATATCTTTT--GAGGGGAAGCAACATGACCACTGTGAGTAATTTTAAATAAAAAA-GC--------------CCAGTCAGTGGTAATACCAGTGGTGAGTGAATATAAAATAATCAATACTGCTATGAACATATTTCTCCTGCTTAGAGTAGctttcccgcaggttcctaggatggggt s panTro4.chr4 21565645 486 + 193495092 CCATCAATGTGCCTAACAAACACAAACCATAGCCGTATCTCACTGAGTTGTAATAACATCTTCCCATAATAACAAACATCACATTATTTTCAAATATCATTTAATTTAGCTGATTATAATGACATTCTCTCAGAATACAGAGTCAATTTGTTTGAATGTATAGGTTTACTTTACTTCTGGAATGTAAAAAA--ATATACAGAGAAACATTTGAGAGAAGTTTTACTGTCAAAGTAAAAGATAAACAATGATAGCAAACGATGTGGTAGAATGAT---AGGAACCTCTGCATGACCAAGAGATATGATTAGCTTGCTCATGCCACTTTCAATATCTTTT--GAGGGGAAGCAACATGACCACTGCGAGTAATTTTAAATAAAAAA-GC--------------CCAGTCAGTGGTAATACCAGTGGTGAGTGAATATAAAAAAATCAATACTGCTATGAACATATTTCTCCGGCTTAGAGTAGctttcctgcaggttcctaggatggggt i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21741197 486 + 198332218 CCATCAATATGCCTAACAAACACAAACCATAGCCGTATCTGACTGAGTTGTAATAACATTTTCCCATAATAACAAACGTCACATTATTTTCAAATATCATTTAATTTAGCTGATTATAATGACATTCTCTCAGAATACAGAGTCAATTTGTTTGAATGTATAGGTTTACTTTACTTCTGGAATGTAAAAAA--ACATACAGAGAAATATTTGAGAGAAGTTTTACTGTCAAAGTAAAAGATAAACAATGATAGCAAACGATGTGGTAGAATGAT---AGGAACCTCTGCATGACCCAGAGATATGATTAGCTTGCTCATGCTACTTTCAATATCTTTT--GAGGGGAAGCAACATGACCACTGTGAGTAATTTTAAATAAAAAA-GC--------------CCAGTCAGTGGTAATACCAGTGGTGAGTGAATATAAAATAATCAATACTGCTATGAACATATTTCTCCTGCTTAGAGTAGctttcctgcaggttcctaggatggggt i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20350578 486 - 85365473 CCATCAATGTGCCTAACAAACACAAACCATAGCCGTATCTCACTGAGTTGTAATAACATCTTTCCATAATAGCAAACATCACATTATTTTCAAATAGCATTTAATTTAGCTGATTATAATGACATTCTCTCAGAATACAGAGTCAATTTGTTTGAACGTATAGGTTTACTTTACTTCTGGAATGTAAAAAA--ACATACAGAGAAATATTTGAGAGAAGTTCTACTGTCAAAGTAAAAGATAAACAATGATAGGGAGCTATGTGGTAGAATGAT---AGGAACCTCTGCATGACCCAGAGATATGATTAGCTTGCTCATGCCACTTTCAATACCTTTT--GAGGGGAAGCAACATGACCACTGTGAGTAATTTTAAATAAAAAA-GC--------------CCAGTCAGTGGTAATACCAGTGGTGAGTGAATAGAAAATAATCAATACTGCTATGAACATATTTCTCCTGCTTAGAGTAGCTTCCCTGCAGGTTCCTAGGATGGGGT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16817357 488 + 184069350 ACGTCAACGTGCCTAACAAACACAAACCACAGCAACATCTCACTGAGTTGTAATAACATCTTCCCATAATAACAAACATCACATTAGTTTCAAATATCATTTAATTTAGCTGATCATAATGACATTCTCTCGGAATACAGAGTCAATCTATTTGAACGTATAGGTTTGCTTTACTTCTGGAATGTAAAAAAAAATATACAGAGAAATATTTGAGAGGAGTTTTACGGTCAAAGTAAAAGATAAACAATGATAGTGAACGATGTGGTAGAATGAT---AGGAACCTCTGCATGACCCAAAGATACGATTAGCTTGCTCATGCCACCTTCAATATCTTTT--GAGGGGAAGCAACTTGACCACTGTGACAAATTTTAAATAAAAAA-GC--------------CCAGTCAGTGGTTATACCAGCGGTGAGTGAATATAAAATAATCAATACTGCTATGAACATATTTCTCCTGCTTAGAGTAGctttcctgcaggtttctaggatggggt i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20867174 488 + 189454096 ACGTCAACGTGCCTAACAAACACAAACCACAGCAACATCTCACTGAGTTGTAATAACATCTTCCCATAATAACAAACATCACATTAGTTTCAAATATCATTTAATTTAGCTGATCATAATGACATTCTCTCGGAATACAGAGTCAATCTGTTTGAACGTATAGGTTTGCTTTACTTCTGGAATGTAAAAAAATATATACAGAGAAATATTTGAGAGGAGTTTTACGGTCAAAGTAAAAGATAAACAATGATAGTGAACGATGTGGTAGAATGAT---AGGAACCTCTGCATGACCCAGAGATACGATTAGCTTGCTCATGCCACCTTCAATATCTTTT--GAGGGGAAGCAACTTGACCACTGTGACAAATTTTAAATAAAAAA-GC--------------CCAGTCAGTGGTTATACCAGCGGTGAGTGAATATAAAATAATCAATACTGCTATGAACATATTTCTCCTGCTTAGAGTAGCTTTCCTGCAGGTTTCTAGGATGGGGT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16457451 488 + 178775436 ACGTCAACGTGCCTAACAAACACAAACCACAGCAACATCTCACTGAGTTGTAATAACATCTTCCCATAATAACAAACATCACATTAGTTTCAAATATCATTTAATTTAGCTGATCATAATGACATTCTCTCGGAATACAGAGTCAATCTGTTTGAACGTATAGGTTTGCTTTACTTctggaatgtaaaaaaaaatatacagagaaataTTTGAGAGGAGTTTTACGGTCAAAGTAAAAGATAAACAATGATAGTGAACGATGTGGTAGAATGAT---AGGAACCTCTGCATGACCCAGAGATACGATTAGCTTGCTCATGCCACCTACAATATCTTTT--GAGGGGAAGCGACATGACCACTgtgacaaattttaaataaaaag-gc--------------cCAGTCAGTGGTTATACCAGCGGTGagtgaatataaaataatcaatactgctatgaacatatTTCTCCTGCTTAGAGTAGCTTTCCTGCAGGTTTCTAGGATGGGGT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19940553 488 - 48547382 ATGTCAACGTGCCTAACAAACACAAACCACAGCAACATCTCACTGAGTTGTAATAACATCTTCCCATAATAACAAACATCACATTAGTTTCAAATATCATTTAATTTAGCTGATCATAATGACATTCTCTTGGAATACAGAGTCAATCTGTTTGAACGTATAGGTTTGCTTTACTTCTGGAATGTAAAAAAAAATATACAGAGAAATATTGGAGAGGAGTTTTACGGTCAAAGTAAAAGATAAACAATGATAGTGAACGATGTGGTAGAATGAT---AGGAACCTCTGCATGACCCAGAGATATGATGAGCTTGCTCATGCCACCTTCAATATCTTTT--GAGGGGAAGCAACATGACCACTGTGACAAATTTTAAATAAAAAA-GC--------------CCAGTCAGTGGTTATACCAGTGGTGAGTGAATATAAAATAATCAATACTGCTATGAACATATTTCTCCTGCTTAGAGTAGCTTTCCTGCAGGTTTCTAGGATGGGGT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21300984 484 - 190850796 CCATCAAGGTGCCTAACAAACACATACCATAGCCATATCTCACTGAGTTGTAATAACCTCTTCCTATAATAACAAACATCACATTATTTTCACATATCATTTAATTTGGCTGATTATAATGACATTCCCTCAGAATACAGAGGCAATCTGTTTGAACACATAGGTTCACATTACTTCTGGAATGTAAAAAA--ATACACAGAGAAATATTTGAGAGAATTTTTACTGT-AAAGTAAAAGATAAACAATGATAGTGAAAGATGTGGTAGAATGAC---AGGAACTTCTGCATCACCCAGAGATATGATTAGCTTGCTCATGCCACTTTCAATATCTTTT--GAGGGGAAACAACATGACCACTGTGAGTAATTTTAAATAAAACA-GC--------------CCAGTCAGTGGTAATACCAGTGGTGAGTGAATATAATATAATCAATACTGCTATGAACATATTTCTCCTGCTTGGAATAGCTTTTCTG-Aggcttctaggatcgggt i calJac3.chr3 C 0 C 0 s mm10.chr5 49279303 401 + 151834684 CCACACATTTACACAGCAGACACAAAGCATACCTACATCTCACATCGCTGTAATACCATCTG-CTACAA-AACACACATCATGTTGTCTTTAGGCATCACTGAGTTTGACTGATTACAGTAATATCCTCTCTGAA-------ACAGTCTGTTT----------------------------------------TGGTACAAAAAAAT------------------------------------ACAATAATAGTGGAGGTTGATATACAGGTATCTAATGAATCTCTG---------GGGATATGACCAGCTTGCATATGATCCTTATACTGTCTCTTTAGAGTAGGAATAGCATAACAGTTGTTAGTTGTGTTAAGCAAAGGA-ATACTAATTTGATAAACTGCTCTGGGGTTCTA--------GGTTGAAAGCAAAATAACACACAC----AGGAATATATTTCTCTAACTTAGAGTAGCTTCCCCACCAGCATCAGTGATGTGGT i mm10.chr5 I 2 I 393 s canFam3.chr3 3869690 468 - 91889043 TTACCATCATACCTAGCATACGTGACCCATAGCCACATCGTACTG----GCCATAATACTTTTCTAT-GTAACAAATATTACATGGCTTTCTTGTGTC--TTAACCTGATGGATCACAGTGACATCTCCTCTGAA--AAGAGCCAATTTATTTGAAGGTAGAGGTTTGTTTTCCTTATAAAGTTTAAGAA---GCTCACAGAGAAATTTCAGACAGAAGCT---CTGTCAAAATGAAAGATAAGCAAAGATGGTGAAAGACATGGTAGAAGGAT---GGAAGCCTTAGAGGCACCGAGGGAGATGATTAGCTCCTTCAGGCCACTCTCAATACCTTCT--GAGGGGAATGGACAGGACTCATGTTAATACTTTTAAACAAAGGAGGC--------------CTTGCCAGTGGGAATGCCTATGGTGGCT-----TAAAATCATAAATAGGGCCATGAGCATATTTC-CCTGCTTGGAGTGGGtttcccactagcttccagaatggggt i canFam3.chr3 C 0 C 0 a score=118254.000000 s hg38.chr4_KI270790v1_alt 177045 35 + 220246 cagacaatggaagcagtagcagaaactctgaaagt- s panTro4.chr4 21566131 35 + 193495092 cagacaatggaagcagtagcagaaactctgaaagt- i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21741683 35 + 198332218 cagacaatggaagcagtagcagaaactctgaaagt- i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20351064 35 - 85365473 CAGACAATGGAAGCAGTAGGAGAAACTCTGAAAGT- i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16817845 35 + 184069350 cagacaatggaagcagtagcagaaactctgaaagt- i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20867662 35 + 189454096 CAGACAATGGAAGCAGTAGCAGAAACTCTGAAAGT- i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16457939 35 + 178775436 CAGACAATGGAAGCAGTAGCAGAAACTCTGAAAGT- i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19941041 35 - 48547382 CAGACAATGGAAGCTGTAGCAGAAACTCTGAAAGT- i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21301468 35 - 190850796 tagccaatggaagcactagcagaaaatctgaaagg- i calJac3.chr3 C 0 C 0 s canFam3.chr3 3870158 36 - 91889043 cagccagtggaatcattggcaataaatctgaaggat i canFam3.chr3 C 0 C 0 e mm10.chr5 49279704 393 + 151834684 I a score=1028754.000000 s hg38.chr4_KI270790v1_alt 177080 314 + 220246 aggaggaaaatgagaccagca--tttttttcttccctgagctttcttcctaacaggcctctgtgggtaggctatattcctgtactcaaggccaccact-ctgtctggaagctttctagacaca--ggtttcctctccaggctctggaaatggttcct--atctcttgcctcttcaATAGTTTACTGTT-ACCAGCTGGA-GCATACACATT-----ACCCCTTAT----TGCTCC---------------AATATAGAGTCACTTTATCAAATTCTTTTCTGGAGTGTAAGATCTCATTCCTGCCAGAAACAGAACTGATACAGATCACAA---TCGATGTATAATATCC s panTro4.chr4 21566166 311 + 193495092 aggaggaaaatgagaccagca--tttttttcttccctgagctttcttcctaacaggcctctgtgggtaggctat---cctgtactcaaggccaccact-ctgtctggaagctttctagacaca--ggtttcctctccaggctctggaaatggttcct--atctcttgcctcttcaATAGTTTACTGTT-ACCAGCTGGA-GCATACACATT-----ACCCCTTAT----TGCTCC---------------AATATAGAGTCACTTTATCAAATTCTTTCCTGGAGTGTAAGATCTCATTCCTGCCAGAAACAGAACTGATACAGATCACAA---TCGATGTATAATACCC i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21741718 313 + 198332218 aggaggaaaatgagaccagca--tttttttcttccctgagctttcttcctaacaggcctctgtgggtaggctatattcctgtacccaaggccaccact-ctgtctggaagctttctag-taca--gttttcctctccaggctctggaaatggttcct--atctcttgcctcttcaATAGTTTACTGTT-ACCAGCTGGA-GCATACACATT-----ACCCCTTAT----TGCTCC---------------AACATAAAGTCATTTTATCAAATTCTTTTCTGGAGTGTAAGATCTCATTCCTGCCAGAAACAGAATTGATACAGATCACAA---TCGATGTATAATATCC i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20351099 315 - 85365473 AGGAGGAAAATGAGACTAGCA--TTTTTTTCTTCCCTGAGCTTTCTTCCTATCAGACCTCTGTGGGTAGGCTATATTCCTGTACTCAAGGCCACCACT-CTGTCTGGAAGCTTTCTGGACACA--GTTTTCCTCTCCAGGCTCTGGAAATGGTTCCT--ATCTCTTGCCTCTTCAATAGTTTACTGTT-ACCAGCTGGA-GCATACACATT-----ACCCCTTAT----TGCTCT--------------AAATACAGAGTCACTTTATCAAATTCTTTTCTGGAGTGTAAGATCTCCTTCCTGCCAGAAACAGAAATGATACAGATCACAA---TCAATGTATAATATCC i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16817880 310 + 184069350 aggagaaaaatgagaccagca--tttttttcttccctgagctttcttcctatcaggcctctgtgggtaggctatattcctgtactcaaggccaccac-----tctggaagctttctggacaca--gttttcctctccaggctctggaagtggttcct--atctcttgcctcttcaATAGTTCACTGTT-ACCAGCTGGA-GAATACACATG-----ACTCCTTAT----TGCTCC---------------AATACAGAGTCACTTTATCACATTCTTTTCTGGAGTGTAAGATCTCGTTCCTGTCAGAAACAGAACTAATACAGATCACAA---TCAATGTATAATATCC i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20867697 310 + 189454096 AGGAGAAAAATGAGACCAGCA--TTTTTTTCTTCCCTGAGCTTTCTTCCTATCAGGCCTCTGTGGGTAGGCTATATTCCTGTACTCAAGGCCGCCAC-----TCTGGAAGCTTTCTGGACACA--GTTTTCCTCTCCAGGCTCTGGAAGTGGTTCCT--ATCTCTTGCCTCTTCAATAGTTCACTGTT-ACCAGCTGGA-GAATACACATG-----ACTCCTTAT----TGCTCC---------------AATACAGAGTCACTTTATCACATTCTTTTCTGGAGTGTAAGATCTCGTTCCTGTCAGAAACAGAACTAATACAGATCACAA---TCAATGTATAATATCC i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16457974 309 + 178775436 AGGAGAAAAATGAGaccagca--tttttttcttccctgagcTTTCTTCCTATCAGGCCTCCGTGGGTAGGCTATA-TCCTGTACTCAAGGCCGCCAC-----TCTGGAAGCTTTCTGGACACA--GTTTTCCTCTCCAGGCTCTGGAAGTGGTTCCT--ATCTCTTGCCTCTTCAATAGTTCACTGTT-ACCAGCTGGA-GAATACACAAG-----ACTCCTTAT----TGCTCC---------------AATACAGAGTCACTGTATCACATTCTTTTCTGGAGTGTAAGATCTCGTTCCTGTCAGAAACAGAACTAATACAGATCACAA---TCAATGTATAATATCC i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19941076 310 - 48547382 AGGAGAAAAATGAGAGCAGCA--TTTTTTTCTTCCCTGAGCTTTCTTCCTATCAGGCCTCTGTGGGTAGGCTCTATTCCTGTACTCAAGGCCGCCAC-----TCTGGAAGCTTTCTGGACACA--GTTTTCCTCTCCAGGCTCTGGAAGTGGTTCCT--ATCTCTTGCCTCTTCAATAGTTTACTGTT-ACCAGCTGGA-GAATACACATG-----ACTCCTTAT----TGCTCC---------------AATACAGAGTCACTTTATCACATTCTTTTCTGGAGTGTAAGATCTCGTTCCTGTCAGAAACAGAACTAATACAGATCACAA---TCAATGTATAATATCC i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21301503 317 - 190850796 aggaggaaaatgagatcagaatttttttttctcccccgagctttctttctatcaggtctctgtgggtaggctctatttctgtactcaaggccaccact-ctgtccagaagctttctggacaca--gtttccctctccaggctccaaaaatggttcct--atcccttgcttcttcaATAGTTTACTGTTGACTAGCTTGA-GCAAACACATT-----ATCCCTTTT----TGCTCC---------------CATGCAGagtccctttatcaaagtcttttctggagtgtgagatctctttcctgccagaaacaggactgatacaGATCACAG---TCAATATATAATATCC i calJac3.chr3 C 0 I 12 s mm10.chr5 49280097 303 + 151834684 AGAAAGAAAA--AGATCAGCA--CTAGAATCT---------TTCCTTCCTAAATGACCCTAGCTGATGGGGAGTGTCTCTGT--TTGGAATTTTCACTCCTACTCAACAATTCTCTGTGT------TTTCCCTTTCCAGTTTTCAGAAGGAGCTTCTCCACTTTTTATATTTTCAAAAGC---------TCCAGAGAAA-GCAT-CGTGTTGATTAGCTCCTTATACCCTGCTCA---------------TATTAGAAGTCACTTTATAAGATTATTTTCCAACATGTAAAATCTCTCTCCAGCTCGAAGAATCACTAATACACACTATGGTGCTGCCTGCATGATAAGT i mm10.chr5 I 393 C 0 s canFam3.chr3 3870194 330 - 91889043 aggaggaaggagaggccagca--actttttaccccgggggttccctacctctcagctctccgt-gtttggcagtgtccctgaactaaaggccacatctactgtcaagcagccttctctacatatggtttccctcttcaggcttcagagaaggttccc---tctcttggccccacagcggtctgctatt-accagcttcaggggtgcacatt-----acccctgtt----ggttcccttaaatcccgcccacatacacggtccctttattaaattgttttcctgagtgtgagatctctttcctgccaggaA-ATCACTGCTACATATCACAA---CCAATGTACACCATCC i canFam3.chr3 C 0 C 0 a score=40511.000000 s hg38.chr4_KI270790v1_alt 177394 18 + 220246 TCGGTAGTCTTTGTCTTG s panTro4.chr4 21566477 18 + 193495092 TCAGTAGTCTTTGTCTTG i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21742031 18 + 198332218 TCAGTAGTCTTTGCCTTG i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20351414 18 - 85365473 TCAGTAGTCTTTGTGTTG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16818190 16 + 184069350 TC--TAGTCTTTGTCTTG i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20868007 16 + 189454096 TC--TAGTCTTTGTCTTG i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16458283 16 + 178775436 TC--TAGTCTTTGTCTTG i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19941386 16 - 48547382 TC--TAGTCTTTGTCTTG i chlSab2.chr27 C 0 C 0 s mm10.chr5 49280400 17 + 151834684 TCAGTGGTC-TTGTCCTA i mm10.chr5 C 0 C 0 s canFam3.chr3 3870524 18 - 91889043 TCAACAGTCTAGGTCCCG i canFam3.chr3 C 0 C 0 e calJac3.chr3 21301820 12 - 190850796 I a score=384828.000000 s hg38.chr4_KI270790v1_alt 177412 104 + 220246 TATTGTGAAACTTAAACGTTTCTTTAAGTACTTAAACGAGGCACTGATGTGTAAGTGCTGAAGTTTCTGGTAAGAAAGCTCTGATTACCTT--------TAGCAAGAGGGGC s panTro4.chr4 21566495 104 + 193495092 TATTGTGAAACTTAAACATTTCTTTAAGTACTTAAACGAGGCACTGATGTGTAAGTGCTGAAGTTTCTGGTAAGAAAGCTCTAATTACCTT--------TAGCAAGAGAGGC i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21742049 104 + 198332218 TATTGTGAAACTTAAACATTTCTTTAAGTACTTAAACGAGGCACTGATGTGTAAGTGCTGAAGTTTCTGGTAAGAAAGCTCTGATTACCTT--------TAGCAAGAGGGGC i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20351432 104 - 85365473 TATTGTGAAACTTAAACATTTCTTTAAGTACTTAAAGGAGACACTGATGTGTAAGTGCTGAAGTTTCTGGTAAGAAAGCTCTGATTACCTT--------TAGCAAGAGCGGC i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16818206 104 + 184069350 TATCGTGAAACTTAAACATTTCTTTAAGTACTTAAACGATGCACTGATTTGGAAGTGCTGAAATTTCTGGTAAGAAAGCTCTGATTACCTT--------TAGCAAGAGGGGC i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20868023 104 + 189454096 TATCGTGAAACTTAAACATTTCTTTAAGTACTTAAACGATGCACTGATTTGGAAGTGCTGAAATTTCTGGTAAGAAAGCTCTGATTACCTT--------TAGCAAGAGGGGC i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16458299 104 + 178775436 TATCATGAAacttaaacatttctttaagTACTTAAACGATGCACTGATTTGTAAGTGCTGAAATTTCTGGTAAGAAAGCTCTGATTACCTT--------TAGCAAGAGGGGC i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19941402 104 - 48547382 TATCATGAAACTTAAACATTTCTTTAAGTACTTAAACGATGCACTGATTTGTAAGCGCTAAAATTTCTGGTAAGAAAGCTCTGATTACCTT--------TAGCAAGAGGGGC i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21301832 111 - 190850796 TATTGTGAAACTAAAATATTT-TTTAAGTACTTAAACAAGGCACTGATGTGTAAGTGCTGAAGTTTCTGGTAAGAAAGCTCTGATTACCTTAAGCAAGAAAGCAAGAGGGGC i calJac3.chr3 I 12 C 0 s mm10.chr5 49280417 96 + 151834684 TATTGGGGATCCCAGGTGCTTCTCCAAATACATAAATGAGGCCCTG--------GAACTGAGTTCTGCGACATAGAAGCTCTGGTTCCCTT--------AAGCAGGGGAGGT i mm10.chr5 C 0 C 0 s canFam3.chr3 3870542 104 - 91889043 TGATGTGAAACTTTAATATTTCTTTAAGGACTTAGATGAAGTGTTGATGACTAATTGCCAAAGTTTCTGGTAAGAGAGCACCGATTACTTC--------AACCAACAGGGGC i canFam3.chr3 C 0 C 0 a score=45003.000000 s hg38.chr4_KI270790v1_alt 177516 15 + 220246 AAACGCAGCTCttt--------------------t s panTro4.chr4 21566599 15 + 193495092 AAATGCAGCTCttt--------------------t i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21742153 15 + 198332218 AAATGCAGCTCttt--------------------t i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20351536 15 - 85365473 AAATGCAGCTCttt--------------------t i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16818310 15 + 184069350 AAATGCAGcttttc--------------------t i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20868127 15 + 189454096 AAATGCAGCttttc--------------------t i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16458403 15 + 178775436 AAAtgcagcttttc--------------------t i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19941506 35 - 48547382 AAATGCAGcttttcttttcttttcttttctttttt i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21301943 15 - 190850796 AAATGTAGCTCTTT--------------------T i calJac3.chr3 C 0 C 0 s canFam3.chr3 3870646 15 - 91889043 AAATGCAGCTCCTT--------------------T i canFam3.chr3 C 0 C 0 e mm10.chr5 49280513 0 + 151834684 C a score=783623.000000 s hg38.chr4_KI270790v1_alt 177531 302 + 220246 tttttttttttttt------tttttcttgagacagagtctcaccctgttgcccaggctggagtgcaatggcgccatcttgg-ccactgcaacctccgcttccagaattcaagtgattctcctgcttcagcctcctgagtagctgggactacaggcacccgccaccatgcgcagctaacttcttgtatctttagtagagatggggtttcaccacattggtcaggctagcctcaaactcctgacctggtgat-ccacccacctcagcctcccaaagtgccgggattacaggcgtgatccaccgcaccaggcc s panTro4.chr4 21566614 298 + 193495092 tttttttttttttt-----------cttgagacagagtctcaccctgttgcccaggctggagtgcaatggcgcgatcttgggtcactgcaacctccgcttccagaattcaagcgattctcctgcttcagcctcctgagtagctgggactactggcacccgccaccatgcgcagctaactttttgtatctttagtagagacggggtttcaccacattggtcaggctagcctcaaactcctgacctggtgat-ccacccacctcagcctcccaaagtgccgggattacaggcgtgatccaccgcaccaggcc i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21742168 292 + 198332218 tttttttt-----------------cttgagacagagtctcaccctgttgcccaggctggagtgcaatggcgcgatcttggctcactgcaacctctgcctccagagttcaagcgattttcctgcttcagcctcctgagtagctgggactacaggcaccagccaccatgcgcagctaactttttgtatatttagtagagatggggtttcaccatattggtcaggctggcctcaaactcctgacctggtgat-ccaccctcctcagcctcccaaagtgctgggattacgggcgtgagccaccgcaccaggcc i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20351551 303 - 85365473 ttttttttttttttt-----tttttcttgaaac--agtctcaccctgttgcccaggctggagtgcaatggtgagatcttggctcactgcaacctatgcctccagaattcaagcgattctcctgcttcagcctcctgaatagctgggactacaggcgcctgccaccatgcgcagctaattttttgtgtctttagttgagacagggtttcaccatattggtcaggctggcctcaaactcctgacatggtgatcccacccgcctcagccttccaaagtgctgggattacgggaatgagccactgtgccgggcc i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16818325 301 + 184069350 tttcttttcttttt--------tttcttgagacagagtttcaccctgttgcccaggctggagtgcaatggcatgatcttggctcactgcaacctctgcctccaggattccagcgattctcctgcttcagcctcttgagtagctggtactacaggcgcccgtcatcatgctcagctattttttcatatctttagtagagaaggggtttcaccaaactggtcaggctggcttgaaactcctgacctggtgat-ccacctgcctcggcctcccatagtgctggaattacaggtgtgagccaccgcacagggcT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20868142 301 + 189454096 tttcttttcttttt--------tttcttgagacagagtttcaccctgttgcccaggctggagtgcaatggcatgatcttggctcactgcaacctctgcctccaggattccagcgattctcctgcttcagcctcttgagtagctggtactacaggcgcccgccaccatgctcagctattttttcatatctttagtagagaaggggtttcaccaaactggtcaggctggcttgaaactcctgacctggtgat-ccacctgcctcggcctcccatagtgctggaattacaggtgtgagccaccgcacagggcc i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16458418 301 + 178775436 tttcttttcttttt--------tttcttgagacagagtttcaccctgttgcccaggctggagtgcaatggcatgatcttggctcattgcaacctctgcctccaggattccagcgattctcctgcttcagcctcttgagtagctggtactacagacgcccgccaccatgctcagctattttttcatatctttagtagagaaggggtttcaccatactggtcaggctggcttgaaactcctgacctggtgat-ccacctgcctcggcctcccatagtgctggaattacaggtgtgagccaccgcacagggCC i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19941541 301 - 48547382 tttcttttcttttt--------tttcttgagacagagtttcaccctgttgcccaggctggagtgcaatggcatgatcttggctcacagcaacctctgcctccaggattccagcgattctcctgcttcagcctcttgagtagctggtactacaggcgcccgccaccatgctcagctattttttcatatctttagtagagaaggggtttcaccatactggtcaggctggcctgaaactcctgacctggtgat-ccacccgcctcggcctcccatagtgctggaattacaggtgtgagccacggcacagggcc i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21301958 304 - 190850796 TTGCTttattattattattattatttttgagatgtagtctcatcttgttgcttaggctggactgcaatggtgcaatcttggctcactctaacttccgccttcctggttcaagcaattctcctgcctcagcctcccaagtacctgggattataggtgcgcaccaccatgcccagtgaattttt-gtatctttagtagagatggggttt----atgttaaccagactggtctcaaacttctgacttcatgat-ccacccaccttggcctcccaaagtgctgggattacaggcttgagccacggcacccagcc i calJac3.chr3 C 0 C 0 e mm10.chr5 49280513 0 + 151834684 C e canFam3.chr3 3870661 0 - 91889043 C a score=52701.000000 s hg38.chr4_KI270790v1_alt 177833 15 + 220246 AAATGCAACTCTTTC s panTro4.chr4 21566912 15 + 193495092 AAATGCAACTCTTTC i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21742460 15 + 198332218 AAATGCAGCTCTTTC i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20351854 15 - 85365473 AAATGCAGCTCTTTC i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16818626 15 + 184069350 AAATGCAGCTCTTTC i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20868443 15 + 189454096 AAATGCAGCTCTTTC i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16458719 15 + 178775436 AAATGCAGCTCTTTC i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19941842 15 - 48547382 AAATGCAGCTCTTTC i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21302262 15 - 190850796 AAATGCAGTTCTTTC i calJac3.chr3 C 0 C 0 s mm10.chr5 49280513 15 + 151834684 AAAAGCTCCTCTTCT i mm10.chr5 C 0 C 0 e canFam3.chr3 3870661 0 - 91889043 C a score=3558738.000000 s hg38.chr4_KI270790v1_alt 177848 1078 + 220246 TATGAACA-TGAGCTCCTCCCTTTAGACCTCGTGAAACATGTTGATTAATTTAGCCAACCAGTCAACAAGTGAGTTTTAAGAGTTTACCACGTCTAAGACTGTGAGATCAGACCACTTACTACTTTAAAGTTATGACAATGAT-AAAAACAGTCTTCT-TTGGGA---AAGAGGC----TTTAACC-----CT-GCAAGCTTACCTACTATGCTAATTATAGGAA-AAAGA--ACATAATTTGCAATGTAATAAAACATTAACATGCAAATTTCTTTCTGAAATTAAAGAAGGCAACCAGT---AATCTGTATATATAAGTGTTTTGTTTGTTTAAATCAGAGATCATGTAATCAGATTTGGCAGAAATGGCAGATTATAAGAAGATTAAGCAAGACCATGAATTCCCCACAAACGTCCCTTTAATCCTGATTATAAAGTT-----------AAAC----------AGGACAAAATAATTATCCTGATAAAGTTGAAAATGTAAACTC-TGTTGGGAAAAGTAACACAGTGCCAT--AAATTCATTGGCAGTCAAGTGTAAACATCATTTTTCTTTGCTTTCTTTTAGCTTCAGAATAGGTTTCAATGGAAGAAAGAGCAAAAGAA------------------------AAC--AGTGTAAC------------------------------------ATGGTGGTATTTTATATGCATTTGAATAATAAAAATTTTACATGATGCTTTAAGAAATATAATCTTGTTTTATCAGCAAAATTTGAAAGAATAGATTAAAAAGTTGAAAAAAAATAAATCAGCAATAGCAT-AATTTCAGAGCATGCGGGCCAAGAGAAT----ATAAACTGTGTATTTGACTGCCACATGTCAGGGCCACTTGAACTGGGAAATAGAAAATCCTGTC--------------------A-------ttttttttttttttttttt--ttttGCCAAGATTCAACTTGAATTTTGCTAGTGTTTATTTATGTGAGGTCTTTAGGGGTACTTCCTTTGTGTGAGATGTGTCTGCCCTATGTGTAAATGTGGCTGGGCTGGGGGATGAGAGAGTACATAGGAGAGAGAGGTTGGAAATATGATTCTGTGTTCTATCATCTCCAGGGAGAAAGAAGAGAACAGAAAATGGAAGGGCACACAGCCAGAAACAAACTTTGTTCAAGTCTCCGATTTT s panTro4.chr4 21566927 1075 + 193495092 TATGAACA-TGAGCTCCTTCCTTTAGACCTCATGAAACATGTTGATTAATTTAGCCAACCAGTCAACAAGTGAGTTTTAAGAGTTTACCATGTCTAAGACTGTGAGATCAGACCACTTACTTCTTTAAAGTTATGACAATGAT-AAAAACAGTCTTCT-TTGGGA---AAGAGGC----TTTAACC-----CT-GCAAGCTTACCTACTATGCTAATTATAGGAA-AAAGA--ACATAATTTGCAATGTAATAAAACATTAACATGCAAATTTCTTTCTGAAATTAAAGAAGGCAACCAGT---AATCTGTATATATAAGTGTTTTGTTTGTTTAAATCAGAGATCATGTAATCAGATTTGGCAGAAATGGCAGATTATAAGAAGATTAAGCAAGACCATGAATTCCCCACAAACCTCCCTTTAATCCTGATTATAAAGTT-----------AAAC----------AGGACAAAATAATTATCCTGATAAAGTTGAAAATGTAAACTC-TGTTGGGAAAAGTAACACAGTGCCAT--AAATTCATTGGCAGTCAAGTGTAAACATCATTTTTCTTTGCTTTCTTTTAGCTTCAGAATAGGTTTCAATGGAAGAAAGAGCACAAGAA------------------------AAC--AGTGTAAC------------------------------------ATGGTGGTATTTTATATGCATTTGAATAATAAAAATTTTACATGATGCTTTAAGAAATATAATCTTGTTTTATCAGCAAAATTTGAAAGAATAGATTAAAAAGTTGAAAAAAAATAAATCAGCAATAGCAT-AATTTCAGAGCAGGCGGGCCAAGAGAAT----ATAAACTGTGTATTTGACTGCCACATGTCAGGGCCACTTGAACTGGGAAATAGAAAATCCTGTC------------------------------ttttttttttttttttt--ttttGCCAAGATTCAACTTGAATTTTGCTAGTGTTTATTTATGTGAGGTCTTTAGGGGTACTTCCTTTGTGTGAGATGTGTCTGCCCTATGTGTAAATGTGGCTGGGCTGGGGGATGAGAGAGTACATAGGAGAGAGAGGTTGGAAATATGATTCTGTGTTCTATCATCTCCAGGGAGAAAGAAGAGAACAGAAAATGGAAGGGCACACAGCCAGAAACAAACTTTGTTCAAGTCTCCGATTTT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21742475 1065 + 198332218 TATGAATA-TGAGCTCCTCCCTTTAGACCACGTACAACATGTTGATTAATTGAGCCAACCGGTCAACAAGTGAGTTTTAAGAGTTTTCCATGTCTAAGACTGTGAGATCAGACCACTTACTACTTTAAAGTTATGACAATGAT-AAAAACAGTCTTCT-TTGGGA---AAGAAGC----TTTAACC-----CT-GCAAGCTTACCTAATATACTAATTATAGGAA-AAAGA--ACATAATTTGCAATGTAATAAAACATTAACATGCAAATTTCTTTCTGAAATTAAAGAAGGCAACCAGT---AACCTGTATATATAAGTGTTTTGTTTGTTTAAATCAGAGATCATGTAATCAGATTTGGCAGAAATGGCAGATTATAAGAAGATTAAGCAACACCATGAATTCCCCACAAATGTCCCTTTAATCCTGATTATAAAGTT-----------AAAC----------AGGACAAAATAATTATCCTGATGAAGTTTAAAATGTAAACTC-TGTTGGGAAAAGTAACACAGTGCCAT--AAATTCATTGGCAGTCAAGTGTAAA---CATTTTTCTTTGCTTTCTTTTTGCTTGAGAATAGGTTTCAATGGAAGAAAGAACACAAGAA------------------------AAC--AGTGTAAC------------------------------------ATGGTGGTATTTTATATGCATTTGAATAATAAGAATTTTACATGATGCTTTAAGAAATATAATCTTGTTTTATCAGCAAAATTTGAAAGAATGGATTAAAAAGTTG-AAAAAAATAAATCAGCAATAGCAT-AATTTCAGAGCAGGCAGGCCAAGAGAAT----ATAAACTGTGTATTTGACTGCCACATGTCAGGGCCACTTGAACTGGGAAATAGAAAATCCTGTC-----------------------------------ATTTTTTTTTTT--TTTTGCCAAGATTCAACTTGAATTTTGCTAGTGTTTATTTATGTGAGGTCTTTAGGGGCACATCCTTTGTGTGAGATGTGTCTGCCCTATGTGCAAATGTGGCTGGGCTGGGGGATGAGAGAGTACATAGGAGAGAGAGGTTGGAAATATGATTCTGTGTTCTATCATCTCCAGGGAGAAAGAAGAGAACAAAAAATGGAAGGGCACACAGCCAGAAACAAACTTTG-TCAAGCCTCCGATTTT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20351869 1060 - 85365473 TATGAATA-TGAGCTCCTCCCTTTAGACCACGTGCAACATGTTGATTAATTGAGCCAACTGGTCAACAAGTGAGTTTTAAGAGTTTACCATGTCTAAGACTATGAGATCAGACCACTTACTACTTTAAAGTTATGACAATGATAAAAAACAGTCTTCT-TTGGGAAAGAAGAGGC----TTTAACC-----CT-GCAAGCTTACCTAATATGCTAATTATAGGAA-AAAGA--ACATAATTTGCAATGTAATAAAACATTAACATGCAAATTACTTTCTGAAATTAAAGAAGGCAACCAGT---AACCTGTATATATAAATGTTTTGTTTGTTTAAATCAGAGATCCTGTAATCAGATTTGACAGAAATGGCAGATTATAAGAAGATTAAGCAAGACCATGAATTCCCCACAAATGTCCCTTTAATCCTGATTAGAAAGTT-----------AAAC----------AGGACAAAATAATTATCCTGATAAAGTTTAAAATGTAAACTC-TGTTGGGAAAAGTA--ACAGTGCCAT--AAATTCATTGGCAGTCAAGTGTAAACATCATTTTTCTTTGCTTTCTTTTTGCTTGAGAATAGGTTTCAATGGAAGAAAGAGCACAAGAA------------------------AAC--AGTGTAAC------------------------------------ATGGTGGTATTTTATATGCATTTGAAAAATGCAAATTTTACAGGATGCTATAAGAAATATAATCTTGTTTTATCAGCAAAATTTGAAAGAATGGATTAAAAAGTTG-AAAAAAATAAATCAGGAATAGCAT-AATTTCAGAACAGGCAGGCCGAGAAAAT----ATAAACTGTGTATTTGACTGCCACATGTCA--------------GGGAAATAGAAAATCCTGTC-----------------------------tttttttttttttttttt--tttGGCCAAGATTCAACTTGAATTTTGCTAGTGTTTATTTATGTGAGGTCTTTAGGGGCATATCCTTTGTGTGAGATGTGTCTGCCCTACGTGTAAATGTGGCTGGGCTGGGGGACGAGAGAGTACATAGCAGAGAGAGGTTGGAAATACGATTC--TGTTCTATCATCTCCAGGGAGAAAGAAGAGAACAGAAAGTGGAAGGGCACACGGCCAGAAACAAACTTTG-TCAAGTCTCTGATTTT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16818641 1077 + 184069350 TACGAATA-TGAGCTCTTCCCTTTAAACCATGTGCAACATATTGATTAGTTTAGCCAATCAGTAAACAAGTGAGTTTTAAGAGTTTACCACGTCTAAGACTATGAGATCAGACCACTTACTACTTTAAAGTTATGACAATGAT-AAAAACAGTCTTCT-TTGGGAAAGAAGAGGC----TTTAACC-----CT-GCAAGCTTACCTAATATGCTAATTATAGGAA-AAAGA--ACATAATTTGCAATGTAATAAAACATTAACATGCAAATTTCTTTCTGAAATTCAAGACGGCAACCAGT---TACCTATATATATAAGTGTTTTGTCTGTTC-AATCAGGGATCCTGTAATCAGATTTGGCAGAAATGGCAGATTATAAGAAGATTAAGCAAGACTATGAATTCTCCACAAATGTCCCTTTAATCCTGATTATAAACTT-----------AAAC----------AGGACAAAATAATTATCCTGATAAAGTTTAAAATGTAAACTC-TGTTGGGAAAAGTA--ACAGTGCCAT--AAATTCATTGGCAGTCAAGTGTAAACATCATTTTTCTTTGCTTTCTTTTTGCTTGAGAATAGATTTCGATGGAAGAAATAGCACAAGAA------------------------AAC--AGTGTAAC------------------------------------ATGGTGGTATTTTATATGTATTTGAATAATGCAAATTTTACATGATGCTATACGAAATATAATCTTGTTTTATCAGCAAAATTGGAAAGAATTGATTGAAAAGTTG-AAAAA---AAATCAGGAATAGCAT-AATGTCAGAGCAGGCAGGCCAAGAGAAT----ATAAAC----TATTTGACTGCCACATGCCAGGGCCACTTGAACTGGGAAATAGAAAATCCTGTC---------------attttattttattttattttattttatttatt--ttTTGCCAAGATTCAGCTTGAATTTTGCTCGTGTGTATTTATGTGAGGTCTTTAGGGGCACATCCTTTGTGTGAGATGTGTCTGCCCTATGTGTAAATGTGGCT-GGCTGGGGGATGAGAGAATACATAGGGGAGAGAGGTTGGAAATACAATTCTCTGTTCTATCATCTCCAGGGGGGAAGAAGAGAACAGAAAATGGAAGGGCACATGGCCAGAAAAAAACTTT----AAGTCTCTGATTTT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20868458 1072 + 189454096 TACGAATA-TGAGCTCTTCCCTTTAAACCATGTGCAACATATTGATTAGTTTAGCCAATCAGTAAACAAGTGAGTTTTAAGAGTTTACCACGTCTAAGACTATGAGATCAGACCACTTACTACTTTAAAGTTATGACAATGAT-AAAAACAGTCTTCT-TTGGGAAAGAAGAGGC----TTTAACC-----CT-GCAAGCTTACCTAATATGCTAATTATAGGAA-AAAGA--ACATAATTTGCAATGTAATAAAACATTAACATGCAAATTTCTTTCTGAAATTCAAGACGGCAACCAGT---TACCTATATATATAAGTGTTTTGTCTGTTT-AATCAGGGATCCTGTAATCAGATTTGGCAGAAATGGCAGATTATAAGAAGATTAAGCAAGACTATGAATTCTCCACAAATGTCCCTTTAATCCTGATTATAAACTT-----------AAAC----------AGGACAAAATAATTATCCTGATAAAGTTTAAAATGTAAACTC-TGTTGGGAAAAGTA--ACAGTGCCAT--AAATTCATTGGCAGTCAGGTGTAAACATCATTTTTCTTTGCTTTCTTTTTGCTTGAGAATAGATTTCGATGGAAGAAATAGCACAAGAA------------------------AAC--AGTGTAAC------------------------------------ATGGTGGTATTTTATATGTATTTGAATAATGCAAATTTTACATGATGCTATACGAAATATAATCTTGTTTTATCAGCAAAATTGGAAAGAATTGATTGAAAAGTTG-AAAAA---AAATCAGGAATAGCAT-AATGTCAGAGCAGGCAGGCCAAGAGAAT----ATAAAC----TATTTGACTGCCACATGCCAGGGCCACTTGAACTGGGAAATAGAAAATCCTGTC--------------------attttattttattttattttatttatt--ttTTGCCAAGATTCAGCTTGAATTTTGCTCGTGTGTATTTATGTGAGGTCTTTAGGGGCACATCCTTTGTGTGAGATGTGTCTGCCCTATGTGTAAATGTGGCT-GGCTGGGGGATGAGAGAATACATAGGGGAGAGAGGTTGGAAATACAATTCTCTGTTCTATCATCTCCAGGGGGGAAGAAGAGAACAGAAAATGGAAGGGCACATGGCCAGAAAAAAACTTT----AAGTCTCTGATTTT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16458734 1092 + 178775436 TACGAATA-TGAGCTCTTCCCTTTAAACCATGTGCAACATATTGATTAGTTTAACCAATCAGTAAACAAGTGAGTTTTAAGAGTTTACCACGTCTAAGACTATGAGATCAGACCACTTACTACTTTAAAGTTATGACAATGAT-AAAAACAGTCTTCT-TTGGGAAAGAAGAGGC----TTTAACC-----CT-GCAAGCTTACCTAATATGCTAATTATAGGAA-AAAGA--ACATAATTTGCAATGTAATAAAACATTAACATGcaaatttctttctgaaattcaaGACGGCAACCAGT---TACCTATATATATAAGTGTTTTGTCTGTTT-AATCAGGGATCCTGTAATCAGATTTGGCAGAAATGGCAGATTATAAGAAGATTAAGCAAGACTATGAATTCTCCACAAATGTCCCTTTAATCCTGATTATAAACTT-----------AAAC----------AGGACAAAATAATTATCCtgataaagtttaaaatgtaaactc-tGTTGGGAAAAGTA--ACAGTGCCAT--AAATTCATTGGCAGTCAAGTGTAAacatcatttttctttgctttctttttgcttgAGAATAGATTTCGATGGAAGAAATAgcacaagaa------------------------aac--agtgtaac------------------------------------aTGGTggtattttatatgcatttgaaTAATGCAAATTTTACATGATGCTATACAAAATATAATCTTGTTTTATCAGCAAAATTGGAAAGAAttgattaaaaagttg-aaaaa---aaatcaggaatagCAT-AATGTCAGAGCAGGCAGGCCAAGAGAAT----ATAAAC----TATTTGACTGCCACATGCCAGGGCCACTTGAACTGGGAAatagaaaatcctgtcattttattttattttattttattttattttattttattttatttatt--ttttgccaagATTCAGCTTGAATTTTGCTCGTGTGTATTTACGTGAGGTCTTTAGGGGCACATCCTTTGTGTGAGATGTGTCTGCCCTATGTGTAAATGTGGCT-GGCTGGGGGATGAGAGAATACATAGGGGAGAGAGGTTGGAAATACAATTCTCTGTTCTATCATCTCCAGGGGGGAAGAAGAGAACGGAAAATGGAAGGACACATGGCCAGaaaaaaaCTTT----AAGTCTCTGATTTT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19941857 1088 - 48547382 TACAAATA-TGAGCTCTTCCCTTTAAACCATGTGCAACATATTGATTAGTTTAGCCAATCAGTAAACAAGTGAGTTTTAAGAGTTTACCACGTCTAAGACTATGAGATCAGATCACTTACTACTTTAAAGTTATGACAATGAT-AAAAACAGTCTTCT-TTGGGAAAGAAGAGGCTTTTTTTAACTCTGCACT-GCAAGCTTACCTAATATGCTAATTATAGGAA-AAAGA--ACATAATTTGCGATGTAATAAAACATTAACATGCAAATTTCTTTCTGAAATTCAAGACGGCAACCAGT---TACCTATATATATAAGTGTTTTGTCTGTTT-AATCAGGGACCCTGTAATCAGATTTGGCAGAAATGACAGATTATAAGAAGATTAAGCAAGACCATGAATTCTCCACAAATGTCCCTTTAATCCTGATTATAAACTT-----------AAAC----------AGGACAAAATAATTATCCTGATAAAGTTTAAAATGTAAACTC-TGTTGGGAAAAGTA--ACAGTGCCATAAAAATTCATTGGCAGTCAAGTGTAAACATCATTTTTCTTTGCTTTCTTTTTGCTTGAGAATAGATTTCAATGGAAGAAACAGCACAAGAA------------------------AAC--AGTGTAAC------------------------------------ATGGTGGTATTTTATATGCATTTGAATAATGCAAATTTTACATGATGCTATATGAAATATAATCTTGTTTTATCAGCAAAATTTGAAAGAATCGATTAAAAAGTTG-AAAAA---AAATCAGGAATAGCAT-AATTTCAGAGCAGGCAGGCCAAGAGAAT----ATAAAC----TATTTGACTGCCACATGCCAGGGCCACTTGAACCAGGAAATAGAAAATCCTGTC--------------------attttattttattttattttatttatttatttGGCCAAGATTCAGCTTGAATTTTGCTAGTGTGTATTTATGTGAAGTCTTTAGGGGCACATCCTTTGTGTGAGATGTGTCTGCCCTATGTATAAATGTGGCT-GGCTGGGGGATGAGAGAATACACAGGGGAGAGAGGTTGGAAATATAATTCTCTGTTCTACCATCTCCAGGGGGGAAGAAGAGAACGGAAAATGGAAGGGCACATGGCCAGAAAAAAACTTTG-TCAAGTCTCTGATTTT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21302277 1059 - 190850796 TATGAAGA-TGAGCTGTTTCCTTTAAACCACATGCAATATATTGATTAA----------AAGTCAACAAGTGAGTTTTAAGAGTTTACCATGTCTA--ACTATGAGATCAGACCACTTACTACTTTAAAGTTATGACAATGAT-AAAAACAGTTTTCT-CTGGGAAAGAAGAGGC----TTTAAGC-----CT-GCAAGCTAACCTAATATGCTAATTATAGGAACAAAGA--ACATAATTTGCAATGTAATAAGACATTAACATACAAATTT-TTTCTGAAATTAAGGAAGGCAACCAGT---AACCTGAATATATAGGTGTTTTGTCTGTTTAAATCTGGGACCCTGTAATCAGATTTGGCAGCAATGGCAGATTATAAGAAGATTAAGCAAGACCATAAATTCCCCACAAATATCCCTTTAATCCTGATTGTAAAGTCAAAATAAAATAAAAC----------AGGACAAAATAATTATCCTGATAAAGTTTAACATGTAAACTC-TGTTGGGAAAAGTAACACAGTGCCAT--AAATTCATTTGCAGTCAAGTATAAACATCATTTTTCTTTGCTTGCTTTTTACTTGAGAGTAGGTTTCAATGGAAGAAGCAGCACAAGCA------------------------AAC--AGTATAAC------------------------------------ATGGTGGTATATTACATGCATTTGAATAATGCAAATTTTACATGATGCTGTAAGAAAGATAACCTTGTTTTATCAGCAAAATTTGAAAGAATGGATTAAAAGGCTG-AAAAGAATAAATCAGGAATAGCAT-AATTTCAGAGTTCACAGGACAAATGAAT----ATAAACTGTGTATTTGACTGCCACATGTCA-GACCGATTCAACTGAGAAATAGAAAATCCTGTC----------------------------------------TTTTTTT--TTTTGCCAATATTAAACCTGAATTTTGCTAGTGTTTAATATTGTGAGGTCTTTAGAAGTGCATCCTTTGTGTGAGATATGTCTGCCCTTTGTG----TGTGGCTCGGCTGGAGTATGAGAGAGGACATTGGAGAGAGAGGTTTGAAATACAATCCTGTGTTCCATCATCTCCAGGGGGAAAGAAGAGAACAGAAAATGGAAGGGCAAATGTCCAGAAACAAACTTT--TCAACTCTCTGATTTT i calJac3.chr3 C 0 C 0 s mm10.chr5 49280528 1007 + 151834684 TACAAGTATTTAGTTCTTCACTTTAGACCTTGTGGAACATATTGATTAATTTAGTCAATTAGTGCACAAAAGAGCTTTA--AATTAATCATGTCTAAGACTATGAGATCAGACTTCCCAGTGCTCTGAAATTGTCAAGGTGAT-AAAAACAGTCTTCCATCTGTAAAGCAGAGGT--ATTTAAGCC-----CT-CCAGGCTTACCTGATATCCTAATTATAGAAG-AAAGACTAGATAATACAAAGAGAAAGACAGCACTAACACGAAGATTTCCTTGTGAAGTTAAAGAGGG--ACCAGT---TACT----CACACAGCTGCTGTGTCTGCAGTGATCAAGTATGCT-TAATCAGA-CTGTCCGAAA-GGAAGACTTGCAATGTCTTAAGCAAGA--------GCCCTGC-----CCCCATTACTCCTGCATGAGAAGTT-----------AATC----------AGG--AAAATAATTCTTTTCACAAAGTTTAACATGTAAACTCTTGCTTGAAAAAGAAACACATTTTCAG--ACACTCATGGATGAACAAGAATAAAAACCATCTTAAG--------CTCTTATGTCAGAACAAGTTTGAGCAGAAGGAAGAACACAGAAATGTACAAAACCACAAAGGAGAAATAAC--AATGCaataaatgataataaacttaataattaataataaaaaCAAAGGTGCCATTTTGTATGCATTTAAATGATGGAGATGACATAGAA---TATCAGAAATTTAATC------------AAAAAGTCAAAGAGATTAATTTCAAAGTAA-AACAG----AATAATGAATAGCATGGATTTCAGACCTGACAGATCATGAGATCGTTAATAGATTTTTTTTTTCACTGC-------CAGGGCCACATGATCTGAGAAATAGAAAGTCCTAGT---------------------------------------------GG--TTTTGGCAGGATGGGTTCTGAAGTTTGTCAATATTTAATTTCAGGATGTCTTCAGATGC-----------------------------------------------------GGGAGAGAGGGGATACAGAAAGCTGGGGACAGGAAAAAAAATC---ACCCTAT-------AGGTGGAGGAAGGAGGATAGAAAA-AGATGGGCACATGGCCAGAAAGTAATTTTG-TCA--TTTCTGATGTT i mm10.chr5 C 0 I 47 s canFam3.chr3 3870661 1021 - 91889043 GATGGATA-TCAGCTCTTCTCTTTAGACTGTATGCAACACATTGATTATTTTTGCCCATCAGTCAACGAATGAGTTTTAGGAGTTTAGAATATCTAAGAC--AGAGATGGGATCACTGACTAGTTTGAAGTTCTCACAATGAT-AAAAACAGTGTTCT-ATG--------AAGTC----TTTAAGC-----CTCAGGAGTTTACATCATATGCTAATTATGTGGT-AAGAA--ACATCAAATACAAGGTCATTAATCATTAGCATGCAGATTTCCTTCTGAAACGAAAGG-GACAATCAGTGTATGTCTGCATATATAGGTGTTTTTTCCACTGAATTCAGGGATCCTCTACTGAGATGTGGCAACAATGGTGGAATCTGAAGAGATGAGGCAAGATGCTGAATCCCTCA-AAATATCCCTTTACTCCTTAATGCAAAGTT-----------CAACTCATTAACAGAGACCACAATAACTCTTCCAATAAAGTTTAAAATATATATTC-TGCTGGGAAAAACCATACAGTGGCAT--ATATTCCTTGTCAGTCAAATATAAACACCATC---CTTTGCTTTCTTCTTACCTGAGGGCAGGTTTAAATAGAAG---CAGCACCAGAA------------------------AACTGAGTCTATT------------------------------------ATGGCAGCACTTTCTGTGCATTTCAATAATGCAAGTTTTACATAGAGCTATAAGGAATATAATCTCACTTTAT-AATGAAGTTCGAGTGAAT---------------TAAAAAATTAATCAAGAACAG--T-------------------CCAAGAGAAT----AGCAACTGCTTATTCAATTGTCACATATCAGGGCTACGTGAACTGGGAAATAGAAATATCTGTC--------------------------------------------ACC--TTTTACCAGGATTAAAGTTGAGTTTTGCAAACTTTTAAATATGTGAGGTCTTCGAAAACACATCCTTTGCAGGAGATGTGTCTGCCCAGTGTTCAAATGTGGTAGGGATGG-GGACAGAAGAGAAGGTTGGAG---GGGGCTGAAGACTTGATCTTGTGATTTGTAATTTGGAGGAAGAAAGAAGGGAAAAGCAAAAAGAAGTTGATAGAGCTAGAAACAGGCTCTC-CTAATTTTCCGATTTT i canFam3.chr3 C 0 C 0 a score=13095.000000 s hg38.chr4_KI270790v1_alt 178926 3 + 220246 GCT s panTro4.chr4 21568002 3 + 193495092 GCT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21743540 3 + 198332218 GCT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20352929 3 - 85365473 GCT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16819718 3 + 184069350 GCT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20869530 3 + 189454096 GCT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16459826 3 + 178775436 GCT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19942945 3 - 48547382 GCT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21303336 3 - 190850796 GCT i calJac3.chr3 C 0 C 0 s canFam3.chr3 3871682 3 - 91889043 GCT i canFam3.chr3 C 0 I 28 e mm10.chr5 49281535 47 + 151834684 I a score=47808.000000 s hg38.chr4_KI270790v1_alt 178929 14 + 220246 TAGGATCACCTctt s panTro4.chr4 21568005 14 + 193495092 TAGGATCACCTCTT i panTro4.chr4 C 0 I 2 s ponAbe2.chr4 21743543 14 + 198332218 TAGGATCACCTCTT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20352932 14 - 85365473 TAGGATCACCTCTT i nomLeu3.chr20 C 0 I 2 s rheMac3.chr5 16819721 14 + 184069350 TAGGATCACCTCTT i rheMac3.chr5 C 0 I 2 s macFas5.chr5 20869533 14 + 189454096 TAGGATCACCTCTT i macFas5.chr5 C 0 I 2 s papAnu2.chr5 16459829 14 + 178775436 TAGGATCACCTCTT i papAnu2.chr5 C 0 I 2 s chlSab2.chr27 19942948 14 - 48547382 TAGGATCACCTCTT i chlSab2.chr27 C 0 I 2 s calJac3.chr3 21303339 14 - 190850796 TAGGATCACCTCTT i calJac3.chr3 C 0 I 16 e mm10.chr5 49281535 47 + 151834684 I e canFam3.chr3 3871685 28 - 91889043 I a score=100.000000 s hg38.chr4_KI270790v1_alt 178943 1 + 220246 c s ponAbe2.chr4 21743557 1 + 198332218 C i ponAbe2.chr4 C 0 C 0 e mm10.chr5 49281535 47 + 151834684 I e chlSab2.chr27 19942962 2 - 48547382 I e macFas5.chr5 20869547 2 + 189454096 I e rheMac3.chr5 16819735 2 + 184069350 I e calJac3.chr3 21303353 16 - 190850796 I e canFam3.chr3 3871685 28 - 91889043 I e papAnu2.chr5 16459843 2 + 178775436 I e nomLeu3.chr20 20352946 2 - 85365473 I e panTro4.chr4 21568019 2 + 193495092 I a score=0.000000 s hg38.chr4_KI270790v1_alt 178944 119 + 220246 cagacagagtggtggccttgagtacaggaatatagcctacccacagaggcctgttaggaagaaagctcagggaagaaaaaaatgctggtctcattttcctcctactttcagagtttctg e mm10.chr5 49281535 47 + 151834684 I e chlSab2.chr27 19942962 2 - 48547382 I e macFas5.chr5 20869547 2 + 189454096 I e rheMac3.chr5 16819735 2 + 184069350 I e calJac3.chr3 21303353 16 - 190850796 I e canFam3.chr3 3871685 28 - 91889043 I e papAnu2.chr5 16459843 2 + 178775436 I e nomLeu3.chr20 20352946 2 - 85365473 I e ponAbe2.chr4 21743558 0 + 198332218 C e panTro4.chr4 21568019 2 + 193495092 I a score=744156.000000 s hg38.chr4_KI270790v1_alt 179063 329 + 220246 cTTCTCTTCAGACTTCAAAAATGTAGTATAAAAAATATTTAAAATATTTAAggctgggcacggtggctcatgcctataatcccagcactttgggaggctgaggtgggtggatcacttgaggtcaggagttcaagaccagcctggccaacatggcgaaacctcgtctctagtaaaaatacaaaaattagcagagcttggtggagagcgcctgtaatcccagctactcgggaggctgaggcagagagaattgattaaaacccaggaggtggaggttgcagtgagctgagatcgcaccactgcactccagcctgggtgatagagcaagactc s panTro4.chr4 21568021 324 + 193495092 CTTCTCTTCAGACTTCAAAAATGTAGtataaaaa-tatttaaaatatttaaggctgggcacggtggctcatgcctataatcccagcactttgggaggctgaggtgggtggatcacttgaggtcaggagttcaagaccagcctggccaacatggcgaaacctcgtctctagtaaaaatacaaaaattagcagagcttggtggcgagcacctgtaatcccagctactcgggtggctgaggcaga----attgattaaaacccaggaggtggaggttgcagtgagctgagatcacgccactgcactccagcctgggtgatagagcaagactc i panTro4.chr4 I 2 C 0 s ponAbe2.chr4 21743558 329 + 198332218 CTTCTCTTCAGACTTCAAAAATGTAGtataaaaaatatttaaaatatttaaggctgggcacggtggctcatgcctataatcccagcactttgggaggccgaggtgggtggatcacctgaggtcaggagttcaagaccagcctggccaacatggcgaaacctcgtctctagtaaaaatacaaaaattagcagagcttggtggcaagcgcctgtaatcccagctacttgggaggctgaggcagagagaattgattaaaacccgggaggtggaggttgcagtgagctgagattgtgccactgcactccagcctgggtgatagagcaagagtc i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20352948 321 - 85365473 CTTCTCTTCAGACTTCAAAAATGTAGTATAAAAA--------AATATTTAAggctgggcgtggtggctcatgcctataatcccagcactttgggaggtcgaggtgggtggatcaccgcaggtcagcagttcaagaccagcctggccaacatggcaaaacctcgtctctagtaaaaatacaaaaattagcagggcttggtggcgagtgtctgtaatctcagctactcgggaggctgaggcagagagaattgattaaaacccgggaggcggagtttgcaatgagctgagattgcgccactgcactccagcctgggtgatagagcgagactc i nomLeu3.chr20 I 2 C 0 s rheMac3.chr5 16819737 321 + 184069350 CTTCTCTTCAGACTTCAAAAATGTAGTATAAAAA--------AATATTTAAggccgggcatggtggctcatgcctataacgatagcacttcggaaggccgaggtgggtggatcacctgaggtcaggagttaaagaccagcctggccaacatggcaaaacctcgtctctactaaaaatacaaaaattagcagggattggtggtgagcgcctgtaatcccagctactcgggaggttgaggcagacagaattgcttaaaacctggtaggcggaggttacagtgagctgagatcgcgccactgcactccagcctgggcaatagagcaaaattc i rheMac3.chr5 I 2 C 0 s macFas5.chr5 20869549 321 + 189454096 CTTCTCTTCAGACTTCAAAAATGTAGTATAAAAA--------AATATTTAAggccgggcatggtggctcatgcctataacgctagcacttcggaaggccgaggtgggtggatcacctgaggtcaggagttaaagaccagcctggccaacatggcaaaacctcgtctctactaaaaatacaaaaattagcagggcttggtggtgagcgcctgtaatcccagctactcgggaggttgaggcagacagaattgcttaaaacctggtaggcggaggttacagtgagctgagatcgcgccactgcactccagcctaggcaatagagcaaaattc i macFas5.chr5 I 2 C 0 s papAnu2.chr5 16459845 321 + 178775436 CTTCTCTTCAGACTTCAAAAATGTagtataaaaa--------aatatttaaggccgtgcatggtggctcatgcctataacgctagcacttcggaaggccgaggtgggtggatcacctgaggtcaggagttcaagaccagcctggccaacatggcaaaaccttgtctctactaaaaatacaaaaattagcagggcttggtggtgagtgcctgtaatcccagctactcgggaggttgaggcagacaGAATTGCTTaaaacctggtaggcggaggttacagtgagctgagatcgcgccactgcactccagcctaggcaatagagcgaaattc i papAnu2.chr5 I 2 C 0 s chlSab2.chr27 19942964 321 - 48547382 CTTCTCTTCAGACTTCAAAAATGTAGTATACAAA--------AATATTTAAggccgggcatggtggctcatgcctataaccctagcacttgggaaggccaaggtgagtggatcacctgaggtcacgagttcaagaccagcctggccaacatggcaaaacctcgtctctactaaaaatacaaaaattactggggcttggtggtgagcgcctgtaatcccagctactcgggaggttgaggcagagagaattgcttaaaacccgggaggcagaggttacagtgagctgagatcgcgccactgcactccagcctaggcgacagagcgagactc i chlSab2.chr27 I 2 C 0 e mm10.chr5 49281535 47 + 151834684 I e calJac3.chr3 21303353 16 - 190850796 I e canFam3.chr3 3871685 28 - 91889043 I a score=26039.000000 s hg38.chr4_KI270790v1_alt 179392 20 + 220246 cgtctcaaaaataaataaa---t- s panTro4.chr4 21568345 23 + 193495092 cgtctcaaaaaaaaaaaaaatat- i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21743887 20 + 198332218 cgtctcaaaaaaaaaaaaa---a- i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20353269 20 - 85365473 cgtctcaaaaaaaaaaaaa---a- i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16820058 20 + 184069350 cgtctcaaaaaaaaaaaaa---a- i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20869870 20 + 189454096 cgtctcaaaaaaaaaaaaa---a- i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16460166 17 + 178775436 catctc---aaaaaaaaaa---a- i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19943285 16 - 48547382 tatctc----aaaaagaaa---a- i chlSab2.chr27 C 0 C 0 s canFam3.chr3 3871713 21 - 91889043 CACTTTAAAAATGTAACAT---AA i canFam3.chr3 I 28 C 0 e mm10.chr5 49281535 47 + 151834684 I e calJac3.chr3 21303353 16 - 190850796 I a score=-18219.000000 s hg38.chr4_KI270790v1_alt 179412 7 + 220246 aaataaa---- s panTro4.chr4 21568368 7 + 193495092 atatata---- i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21743907 4 + 198332218 aaaT------- i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20353289 4 - 85365473 aaaG------- i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16820078 1 + 184069350 G---------- i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20869890 1 + 189454096 G---------- i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16460183 1 + 178775436 g---------- i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19943301 1 - 48547382 G---------- i chlSab2.chr27 C 0 C 0 s mm10.chr5 49281582 3 + 151834684 ----AAG---- i mm10.chr5 I 47 I 4 s canFam3.chr3 3871734 7 - 91889043 ----AAATGTC i canFam3.chr3 C 0 C 0 e calJac3.chr3 21303353 16 - 190850796 I a score=12250906.000000 s hg38.chr4_KI270790v1_alt 179419 3474 + 220246 TAAGTCTTTATATGACTAGCC-TGTGG-TGGCTTGA-CCCACAATAACTTCAGTGATGTC-----AATTTTAAGGCTGGAAACCACTCAAAGAAAACTTGTGAAACAAATGGA---------CAAATGTGCATCATCTC----T---CCCTCTCATCCGTTAATCTAAAGCTCTCTAC-------------TTG-ATGGAAT--GATGAATTCTTACCTCCTGCTTTTAATAATATAATTTCACAAAATTTGAAATACTTTAACACACTAGTTA---AACAATTCAGTGTTTCACAGAATTTTTGGGTTTAAATTGCTTTTGCTTCCCTTAGGTGGAGAATTGAACTTGGACATGCCTATAACTTTCAGACCTGAAGCCTGAAACAGAGCTCCAGGCAATATTCACCTCACACGTATATTTGGGGAATTCTTGATAAT--------GGAAAAATGTGTTCAGGTCTTGATTTTTCAAGAAAACAATGTACAGAATAT----TGAAAAATGTCAAAACAACCTTCAAATAAGTACC-----------CTAAAACATGACAATATTAAATTTCACACATAAAGAAGAAACAGTTC-AAAACATGATATCTG---CAATAACATTCATCC-TTCTCAATGGGGCA------GCATTCATAT----------------------------------------------------------------------GATA--------------------GGGTGTTGTATGGGTTCCTATCATACACAA-----------A---------------TAGAAGTGTCGTATTCTTGGAG---CAATCC-TAAGACCTATCTCCATTTATTTAGGTGTACAAGAATATAT-----TGGGTAGCATGAGCCCCATCTAGAATTGAATATGATATGGTACATCAAG-------AGGCAGATCTCAAGCTGAGAAGAAAATAGGAAAATTGATC---------------CTACAGTGAA----------------CTGAGGCCATTAACTTGTAATATTTGCATATGGATTTCTGTGATTTGCTATACATAACAAATAAACTTTTAA-------------------------AAAGCATATGTTTTTATGATAA-----ATACAGACATTATATATG--------------------------------------------TTTGT----------------------AAAATACACTCTTTGAGAAGTGATCTGCCATGAT-AAAAAATATG--TAGGAAGTTTCAGGGAAAATAGATGTATCTTATTTTAGCTGGACAA-ATCTTTACTTTTGAATCTGTA--CTCTCTAAAAAA---ATTATTTTAGAAATCAAAT------------TAAATTTTTAATT-------TGTAAGCAATCCTAGACACTGCCACAAC-TTACATGAAAAGCTCTCACAAAAGGAAATTGCTTTTCTGTAACTTGTGATAACACTAATAAGACAAATTGAAGGAAAGTTTGT----ATCCACAAAAATTTCTTTGCACTTCCAATATTCTATGTTTGTATAA----ATGGCCCATTGTGGTATCAAATGAGAAGCAGCTGCCA-AAAATA-AAATTATATATTTTGGAATTAACTTGTTTTCAAATGTAAAACAAAATCACCGTTTCCTCAGATAACACGATTGACCaaaaaaaaaaaaaa-----aataaaaataaataaataaataaaGGGCTTTTTGGTAAAAAG--AAAAAAAATCACCCAAGACATGTTCGTGTTGTTTTAAATTTTTGATAACTACAAAGATACATGCTGATTGCTCAGGATACAATTAGCAGCTGCCTGCATATCCAACCTTAAAGGAAATTTTTTAAGCTAGTTCAACTC-TGTTTCCTACTTCTTCATTAATTAC-TAGCTAAGGGACTTGAAAGTGTCCTAATGAATTTTACATTAGACTCTGTAATATGAATGGTGTATATTATCACAGCATCTAGTAAATGCATAAATTGGCTTTTCCAAG-----------------------------------------------------TCGCA-TTTTGAGTAGTTGTAAAGATTCTGGCTGGATATCACAAAATTTAGTATTA--GAGACTGAGCCGAAAAG-AATTTTTACAAGAAACAGGTTGCTGCAATCACATTTCTCAGGTCATAAATCTATGTTACTACTTTATGATAATCTGTCGGTCCTTGTTCTCAAAGTTCAAAGATGCTGTGCTTCTTCTTTTTTTTTTTC-CTCCTGTGGTTCAAAAAGAAGAAAGCAATCCCACTTACAGTGATTTCCAAATACGCATTGAATAAAGCTTAAAATACTACTGCTATACCAGCTTTCCATAATTTCCATATTATAAAGTAC---CATCCAGTGATAAAGTACCAACCACAGTGTTTTGGATTTAATACTTATGGTTTACAGTTTCCCAACCACTTACCATTTTCGTAAAATTCTTTGAAATCAAAAGTTTAAGAAAACTATTCAACAAACAGAATGAGCTAGACAGGCAGAAAACTGTACCTAAATCCAGTCAGAAACA---GACAGAACCTTAGGATTGCCCTATCAGAGAGGAAAGGACAGACAACCATGGAAACCTCATGGAAAGCTTTCTTTTATAAAATATTTCTCTAATTTCATAGCAAGGTAAAAGATCACCTCTTGCTCAT---TTTCAAATGTGACATGATACCATAAATGGCACATCATCCTTACTTGAATG-TTTAAAGCTAATAT---GCAGGTAATGTCAA--------------------AGTCATAGTGATGGGACTAAACATTTGTAATCTAAAGGTGAAGA-CTGCGTGAGAAACACCACAGAGCTCCGAGTTGGCAAAAGTCAGATACAGACTCTCAATGATTATTCCTTAAAGAATATCCAAAGTCACCACAATTCACATTACCTAAAGATTAAAATGCGGATATTAACAGGAAATTAACATTAGGATGTTAACAATCCTCTTAATATCTATTAATATTTGATGATGCTCTCTAAAATCATTTGATTGT--CAGTTACTCTCTTAAAATGGTTTTCCCTTATTACA---CTAACATAATTGTATATGCAGTTTAGTTAATTATCGCCAAGACTTTACTTTCTTAGGTAAAATGTTGCTCAAATTCATCTCTCAGCTTTATATCAGCACAAGATCACCTCTTGCTCATTGTCAAATGTGACACGATATCATAAATGGCACATCATCCTTACATCATC----CTTACTTACAGTGTGTGAGTTTCTTTACTC---TTTTTTTCTCTTTATTTAGATTAAAGAAAACAAATATAGGTCAGTATTTGAAAAATA--AAGCTCACAACAGTTCTTTATGACCAGAATCAAAGTGT-GTGTCCTGTTAACCAAGATTTG-TCTCTCAGAAGTTTGATGATCTGTTAAAAAATATATATATTATCAGTGT-CAAGT-ATTTTAGTCCCACCTGTCACTAATTTAATGACGGCATTGCCTAGGAATTTCATGAGCAACAAAACTGTTGATTTAGCCTCATAATTTTGGAACATATTAAAAATATTTTCTTGCTATCAACACTT-AGATTT-AAATAGAATTTCTATTTCAATCATGAAAATTTTTAAACATTGAAATCCACTGCAATGAAACAAATATGAAACCTCACATGGACATTTTACTCTTCAGCTGTTTTCATATTTTGCT---CACATTTTGCAAGGAACCCAGAGATCCAAAAGAAATATCCTTAACTCTTTCCCGGCCAAGCCCTATGATCAAACACATGGGAAATAATCTATGGATTACAATAATCAAACAGTTCTAGAGAATTTCTAAATATCTGCAGGA-AGAAAAT---CTGTGTG-CTTTTCAAGTAAACTGCAGCAATCAGGAAAGAAGAGAAAAACCCCTTGCACAATCATG s panTro4.chr4 21568375 3468 + 193495092 taaGTCTTTATATGACTAGCC-TGAGG-TGGCTTGA-CTGACAATAACTTCAGTGATGTC-----AAGTTTAAGGCTGGAAACCACTCAAAGAAAACTTGTGAAACAAATGGA---------CAAATGTGCATCATCTC----T---TACTCTCATCCTTTAATCTAAAGCTCTCTAC-------------TTG-ATGGAAT--GATGAATTCTTACCTCCTGTTTTTAATAATATAATTTCACAAAATTTGAAATACTTTAACACACTAGTTA---AACAATTCAGTGTTTCACAGAATTTTTGGGTTTAAATTGCTTTTGCTTCCCTTAGGTGGAGAATTGAACTTGGACATGCCTATAACTTTCAGACCTGAAGCCTGAAACAGAGCTCCAGGCAATATTCACCTCACATGTATATTTGGGGAATTCTTGATAAT--------AGAAAAATGTGTTCAGGTCTTGATTTTTCAAGAAAACAATGTACAGAATAT----TGAAAAATGTCAAAACAACCTTCAAATAAGTACC-----------CTAAAACATGACAATATTAAATTTCACACATAAAGAAGAAACAGTTC-AAAACATGATATCTG---CAATAACATTCATCC-TTCTCAATGGGGCA------GCATTCATAT----------------------------------------------------------------------GATA--------------------GGGTGTTGTATGGGTTCCTATCATACACAA-----------A---------------TAGAAGTGTCATATTCTTGGAG---CAATCC-TAAGATCTATCTCCATTTATTTAGGTGTACAAGAATATAT-----TGGGTAGCATGAGCCCCATCTAGAATTGAATATGATATGGTACATCAAG-------AGGCAGATCTCAAACTGAGAAGAAAATAGGAAAATTGATC---------------CTACAGTGAA----------------CTGAGGCCATTAACTTGCAATATTTGCATATGGGTTTCTGTGATTTGCTATACATAACAAATAAACTTTTAA-------------------------AATGCATATGTTTTTATGATAA-----ATACAGACATTATATATG--------------------------------------------TTTGT----------------------AAAGTACACTCTTTGAGAAGTGATTTGCCATGAT-AAAAAATATG--TAGGAAGTTTCAGGGAAAATAGATGTATCTTATTTTAGCTGGACAA-ATCTTTACTTTTAAATCTGTA--CTCTCtaaaaaa---attattttagaaatcaaat------------taaatttttaatt-------tGTAAGCAATCCTAGACACTGCCAAAAC-TTACATGAAAAGCTCTCACAAAAGGAAATTGCTTTTCTGTAACTTGTGATAACACTAATAAGACAAATTGAAGGAAAGTTTGT----ATCCACAAAAATTTCTTTGCACTTCCAATATTCTATGTTTGTATAA----ATGGCCCATTTTGGTATCAAATGAGAAGCAGCTGCCA-AAAATA-AAATTATATATTTCGGAATTAACTTCTTTTCAAATGTAAAACAAAATCACCGTTTCCTCAGATAACACGATTGACCAAAaaaaataaaaa-------taaaaataaa-----aaATAAAGGGCTTTTTGGTAAAAAG--AAAAAAAATCACCCAAGACATGTTCGCGTTGTTTTAAATTTTTGATAACTACAAAGATACATGCTGATTGCTCAGGATACAATTAGCAGCTGCCTGCATATCCAGCCTTAAAGGAAATTTTTTAAGCTAGTTCAACTC-TGTTTCCTACTTCTTCATTAATTAC-TAGCTAAGGGACTTGAAAGTGTCCTAATGAATTTTACATTAGACTCTGTAATATGAATGGTGTATATTATCACAGCATCTAGTAAATGCATAAATTGGCTTTTCCAAG-----------------------------------------------------TCGCA-TTTTGAGTAGTTGTAAAGATTCTGGCTGGATATCACAAAATTTAGTATTA--GAGACTGAGCCGAAAAG-AATTTTTACAAGAAACAGGTTGCTGTAATCACATTTCTCAGGTCATAAATCTATGTTACTACTTTATGATAATCTGTCGGTCCTTGTTCTCAAAGTTCAAAGATGCTGTGCTTCTTCTTTTTTTTTTTTTCTCCTGTGGTTCAAAAAGAAGAAAGCAATCCCACTTACAGTGATTTCCAAATACGCATTGAATGAAGCTTAAAATATTACTGCTATACTAGCTTTCCATAATTTCCATATTATAAAGTAC---CATCCAGTGATAAAGTACCAACCACAGTGTTTTGGATTTAATACTTATGGTTTACAGTTTCCCAACCGCTTACCATTTTCATAAAATTCTTTGAAATCAAAAGTTTAAGAAAACTATTCAACAAACAGAATGAGCTAGACAGGCAGAAAACTGCACCTAAATCCAGTCAGAAACA---GACAGAACCTTAGGATTGCCCTATCAGAGAGGAAAGGACAGACAACCATGGAAACCTCATGGAAAGCTTTCTTTTATAAAATATTTCTCTAATTTCATAGCAAGGTAAAAGATCACCTCTTGCTCAT---TTTCAAATGTGACATGATACCATAAATGGCACATCATCCTTACTTGAATG-TTTAAAGCTAATAT---GCAGGTAATGTCAA--------------------AGTCATAGTGATGGGACTAAACATTTGTAATCTAAAGGTGAAGA-CTGCGTGAGAAACACCACAGAGCTCCGAGTTGGCAAAAGTCAGATACAGACTCTCAATGATTATTCCTTAAAGAATATCCAAAGTCACCACAATTCACATTACCTAAAGATTAAAATGCGGATATTAACAGGAAATTAACATTAGGATATTAACAATCCTCTTAATATCTATTAATATTTGATGATGCTCTCTAAAATCATTTGATTGT--CAGTTACTCTCTTAAAATGGTTTTCCCTTATTACA---CTAACATAATTGTATATGCAGTTTAGTTAATTATCGCCAAGACTTTACTTTCTTAGGTAAAATGTTGCTCAAATTCATCTCTCAGCTTTATATCAGCACAAGATCACCTCTTGCTCATTGTCAAATGTGACACGATATCATAAATGGCACATCATCCTTACATCATC----CTTACTTACAGTGTGTGAGTTTCTTTACTC---TTTTTTTCTCTTTATTTAGATTAAAGAAAACAAATATAGTTCAGTATTTGAAAAATA--AAGCTCACAACAGTTCTTTATGACCAGAATCAAAGTGT-GTGTCCTATTAACCAAGATTCA-TCTCTCAGAAGTTTGATGATCTGTTAAAAAATATATATATTATCAGTGT-CAAGT-ATTTTAGTCCCACCTGTCACTAACTTAATGACAGCATTGCCTAGGAATTTCATGAGCAAAAAAACTGTTGATTTAGCCTCATAATTTTGGAACATATTAAAAATATTTTCTTGCTATCAACACTT-AGATTT-AAATAGAATTTCTATTTCAATCGTGCAAATTTTTAAACATTGAAATCCACTGCAATGAAACAAATATCAAACCTCACATGGACATTTTACTCTTCAGCTGTTTTCATATTTTGCT---CACATTTTGCAAGGAACCCAGAGATCCAAAAGAAATATCCTTAACTCTTTCCCGGCCAAGCCCTATGATCAAACACACGGGAAATAATCTATGGATTACAATAATCAAACAGTTCTAGAGAATTTCTAAATATCTGCAAGA-AGAAAAT---CTGTGTG-CTTTTCAAGTAAACTGCAGCAATCAGGAAAGAAGAGAAAAACCCCTTGCACAATCATG i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21743911 3475 + 198332218 TAAGTCTTTATATGACTAGCC-TGTGG-TGGCTTGA-CCCACAATACCTTAAGTGATGTC-----AAGTTTAAGGCTGGAAACCACTCAAAGAAAACTTGTGAAACAAATGTA---------CAAATGTGCATCATCTC----T---CCCTCTCATCCTTTAATCTAAAGCACTCTAC-------------TTG-ATAGAAT--GATGAATTCTTACCTCCCGCTTTTAATGATATAATTTCACAAAATTTGAAATACTTTAACACACTAGTTAAACAACAATTCAGTGTTTCACAGAATTTTTGGGTTTAAATTGCTTTTGCTTCCCTTAGGTGGAGAATTCAACTTGGACATGCCTATAACTTTCAGACCTGAAGCCTGAAACAGAGCTCCAGGCAATATTTACCTCACACATATATTTAGGGAATTCTTGATAAT--------AGAAAAATGTGTTCAGGTCTTGATTTTTCAAGAAAACAATGTACAGAATAT----TGAAAAATGTCAAAACAACCTTCAAATAAGTACC-----------CTAAAACATGACAATATTAAATTTCACACATA---AAGAAACAGTTC-AAAACATGATATCTG---CAATAACATTCATCC-TTCTCAATGGGGCA------GCATTCATAT----------------------------------------------------------------------GATA--------------------GGGTGTTGTATGGGTTCCTATCATACACAA-----------A---------------TAGAAGTGTCGTATTCTTGGAG---CAATCC-TAAGACCTATCTCCATTTATTTAGGTGTACAAGAATATAT-----TGGGTAGCATGAGCCCCATCTAGAATTGAATATGATATGGTACATCAAG-------AGGCAGATCTCAAACTGAGAAGAAAATAGGATAATTGATC---------------CTACAATGAA----------------CTGAGGCCATTAACTTGTAATATTTGCATATGGATTTCTGTGATTTACTATACATAACAAATAAACTTTTAA-------------------------AATGCATACGTTTTTATGATAA-----ATACAGACATTATATATG--------------------------------------------TTTGT----------------------AAAATACACTCTTTGAAAAGTGATTTGCCATAAT-AAAAAATATG--TAGGAAGTTTCAGGGAAAATAGATGTATCTTATTTTAGCTGAACAA-ATCTTTACTTTTGAATCTGTA--CTCTCtaaaaaa---attattttagaaatcaaat------------taaatttttaatt-------tGTAAGCAATCCTAGGCATTGCCAAAAC-TTACATGAAAAGCTCTCACAAAAGGAAATTGCTTTTCTCTAACTTGCGATAACACTTATAAGACAAATTGAAGGAAAGTTTGT----ATCCACAAAAATTTCTTTGCACTTCCAATGTTCTATGTTTGTATAA----ATGACCCATTTTGGTATCAAATGAGAAGCAGCTGCCA-AAAATA-AAATTATATATTTCAGAATTAACTTGTTTTCAAATGTAAAACAAAATCACCATTTCCTCAGATAACACGATTGACcaacaacaacaacaacaacaaaaaaaaaaaaaaaaaaaaaaaaaGGGCTTATTGGTAAAAAGAAAAAAAAAATTACCCAAGACATGTTCCTGTTGTTTTAAATTTTTGATAACTACAAAGATACATGCTGATTGCTCAGGATACAATTAGCAGCTGCCTGCATATCCAACCTTAAAGGAAATTTTTTAAGCTAGTTCAACTC-TGTTTCCTACTTCTTCATTAATTAC-TAGCTAAGGGACTTGAAAGTGTCCTAATGAATTTTACATTAGACTCTGTAATATGAATGGTGTATATTATCACAGCATCTAGTAAATGCATAAATTGGCTTTTCCAAG-----------------------------------------------------TAGCA-TTTTGAGTAGTTGTAAAGATTCTGGCTGGATATCACAAAATTTAGTATTA--GAGACTGAGCCGAAAAG-AATTTTTACAAGAAACAGGTTGCTGTAATCACATTTCGCAGGTCATAAATCTATGTTACTACTTTATGATAATCTGTTGGTCCTTGTTCTCAAAGTTCAAAGATGCTGTGCTTTTTATTTTTTTTT----CTCCTGTGGTTCAAAAAGAAGAAAGCAATCCCACTTACAGTGATTTCCAAATACACATTGAATAAAGCTTAAAATATTACTGCTATACTAGCTTTCCATAATTTCCATATTATAAAGTAC---CATTCAGTGATAAAGTACCAACCACAGTGTTTTGGATTTAATACTTATGGTTTACAGCTTCCCAACCACTTACCATTTTCGTAAAATTCTTTGAAATCAAAAGTTTAAGAAAACTATTCAACAAACAGAATCAGCTAGACAGGCAGAAAACTGCACCTAAATCCAGTCAGAAACA---GACAGAACCTTAGGATTGCCCTATCAGAGAGGAAAGGATAGACAACCATGGAAACCTCATGGAAAGCTTTCTTTTATAAAATATTTCTCTAATTTCATAGCAAGGTAAAAGATTACCTCTTGCTCAT---TTTCAAATGTGACATGATACCATAAATGGCACGTCATCCTTACTTGAATG-TTTAAAGCTAATAT---GCAGGTAATGTCAA--------------------AGTCATAGTGATGGGACTAAACATTTGTAATCTAAAGGTGAAGA-CTGTGTGAGAAACACCACAGAGCTCCGAGTTGGCAAAAGTCAGATACACACTCTCAATGATTATTCCTTAAAGAATATCTAAAGTCACCACAATTCACATTACCTAAAGATTAAAATGCAAATATTAACAGGAAATTAACATTAGGATATTAACAAT-CTCTTAATATCTATTAATATTTGATGATGCTCTCTAAAATCATTTGATTGT--CAGTTACTCTCTTAAAATGGTTTTCCCTTATTACA---CTAACATAATTGTATATGCAGTTTAGTTAACTATCGTCAAGACTTTACTTTGTTAAGTAAAATGTTGCTCAAATTCATCTCTCAGCTTTATATCAGCACAAGATCACCTCTTGCTCATTGTCAAATGTGACACGATATCACAAATGGCACATCATCCTTACATCATC----CTTACTCACAGTGTGTGAGTTTCTTTACTC---TTTTTTTCTCTTTATTTAGATTAAAGAAAACAAATATAGGTCAGTATTTGAAAGATA--AAGCTCACAACAGTTCTTTATGACCAGAATCAAAGTGT-GTGTTCTATTAACCAAGATTTG-TCTCTCAGAAGTTTGATGATCTGTTAAAAA--ATATATATTATCAGTGT-CAAGT-ATTTTAGTCCCACCTGTCACTAACTTAATGACAACATTGCCTAGGAATTTCATGGGCAACAAAACTGTTGGTTTAGCCTCATAATTTTGGAACATATTAAAAATATTTTCTTGCTATCAACACTT-AGATTT-AAATAGAATTTCTATTTCAATCGTGCAAATTTTTAAACATTGAAATCCACTGCAATGAAACAAATATCAAACCTCACATGGACATTTGACTCTTCAGCTGTTTTCATATTTTGCT---CACATTTTGCAAGGAACCCAGAGATCCAAAAGAAATATCCTTAACTCTTTCACGGCCAAGCCCTATGATCAAACACACAGGAAGTAATCTACGGATTACAATAATCAAAGAGTTCTAGAGAATTTCTAAATATCTGCAGGA-AGAAAAT---CTGTGTG-CTTTTCAAGTAAACTGCAGCAATCAGGAAAGAAGAGAAAAATCCCTTGCACAATCATG i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20353293 3434 - 85365473 TAAGTCTTTATATGACTAGCC-TGTGG-TGACTTGA-CCCACAATACCTTCAATGATGTC-----AAGTTTAAGGCCGGAAACCACTCAAAGAAAATTTGTGAAACAAATGTA---------CAAATGTGCACCATTTC----T---CCCTCTCATCCTTTAATCTAAAGCTCTCTAC-------------TTG-ATGGAAT--GATGAATTCTTACCTCTTGCTTTTAATAATATAATTTCACAAAATTTGAAATACTTTAACCCACTAGTTAAACAGCAATTCACTGTTTCACAGAATTTTTGGGTTTAAATTGCTTTTGCTTCCCTTAGGTGGAGAATTGAACTTGGATATGCCTATAACTTTCAGACCTGAAGCCTGAAACAGAGCTCCAGGCAATATTCACCTCACACATATATTTGGAGAGTTCTTGCCAAT--------AGAAAAATGTGTTCAGGTCTTGATTTTTACAGAAAACAATGTACAGAATAT----TGAAAAATGTCAAAACAACCTTCAAATAAGTACC-----------CTAAAACATGACAATATTAAATTTCACACATAAAGAAGAAATAGTTC-AAAACATGATATCTG---CAATAACATTCCTCC-TTCTCAATGGGGCA------GCATTCATAT----------------------------------------------------------------------GATA--------------------GGATGTTGTATGGGTTCCTGTCATACACAA-----------A---------------TAGAAGTGTCGTATTCTTGGAG---TAATCC-TAAGACCTATCTCCATTTATTTAGGTGTACAAGAATATAT-----TGGGTAGCATGAGCCCCATCTAGAATTGAATATGATATGGCATATCAAG-------AGGCAGATCTCAAACTGAGAGGAAAATAGTATAATTGATC---------------CTACAATGAA----------------CTGAGGCCATTAACTTGTAATATTTGCATATGGATTTCTGTGATTTACTATACGTAACAAATAAACTTTTAA-------------------------AATGCAT--GTTTTTATGATAA-----ATACAGACATTATATATG--------------------------------------------TTTGT----------------------AAAATACATTCTTTGAGAAGTGATTTGCCATGAT-AAAAAATATG--TAGGAAGTTTCAGGGAAAATAGATGTATCTTATTTTAGCTGGACAA-ATCTTTACTTTTGAATCTGTA--CTCTCTAAAAAA---ATAATTTTATTAATCAAAT------------TAAATTTTTAATT-------TGTAAGCAATCCTAGGCATTGCCAAAAC-TTACATGAAAAGCTCTCACAAAAGGAAATTACTTTTCTCTAACTTGTAATAACACTAATAAGACAAATTGAAGGAAAGTTTGT----ATCCACGAAAATTTCTTTGAACTTCCAATGTTCTATGTTTGTATAA----ATGGCCCATTTTGGTATCAAATGAGAAGCAGCTGCCA-AATATA-AAATTATATATTTAAGAATTAACTTGTTTTCAAATATAAAACAAAATCACTATTTCCTCAGATAACACGATTGATCAAAAAAAA-AACAA----------------------AAATAAAGGTCTTGTTGGTAAAAAGAAAAAAAAAATCATCCAAGACATGTTCGTGTTGTTTTAAATTTTTGATAACTACAAATATACATGCTGATTGCTCAGGATACAATTAGCAGCTGCCTGAATATCCAACCTTAAAGGAAATTTTTTGAGCTAGTTCAACTC-TGTTTCCTACTTCTTCATTAATTAC-TAGCTAAGGGACTTGAAAGTGTTCTAATGAATTTTACATCAGACTCCGCAATATGAATGGTGTATATTATCACAGCATCTAGTAAATGCATACATTGGCTTTTCCAAG-----------------------------------------------------TAGCG-TTTTGAGTAGTTGTAAAGATTCTGGCTGGATATCACAAAATTTAGTATTA--GAGACTGAGCCGAAAAG-AATTTTTACAAGAAACAGGTTGCTGTAATCACATTTCTCAGGTCATAAATCTATGTTACTACTTTATGATAATC-GTCGGTCCTTGTTCTCAAAGTTCAAAGATGCTGTGCTTCTTTTATTTTT------CTCCTGTGGTTCAAAAAGAAGAAAGCAATCCCACTTACAGTGATTTCCAAATACACACTGAATAAAGCTTAAAATATTACTGCTATACTAGCTTTCCATAATTTCCATATTATAAAGTAC---CATCCAGTGATAAAGTACCAACTACAGTGTTTTAGATTTAATACTTATGGTTTACAGCTTCACAACAACTTACCATTTTCGTAAAATTCCTTGAAATCAAAAGTTTAAGAAAACTATTCAACAAACAGAGTGAGCTAGAAAGGCAGAAAACTGCACCTAAATCCAGTCAGAAACA---GAAAGAACCTTAGGATTGCCCTGTCAGAGAGCAAAGGACAGACAACCATGGAAACCTCATGG---------------------TTTCTCTAATTTCGTAGCAAGGTAAAAGATCACCTCTTGCTCAT---TTTCAAATGTGACATGATACCATAAATGGCACATCATCCTTACTTGAATG-TTTAAAGCTAATAT---GCAGGTAATGTCAA--------------------AGTCATAGTGATGGGACTAACCATTTGTAATCTAAAGGTGAAGA-CTGCATGAGAAACACCACAGAGCTCCGAGTTGGCAAAAGTCAGATACAGACTCTCAATGATTATTCCTTAAAGAATATCCAAAGTCACCATAATTCACATTACCTAAAGATTAAAATGCGGATATTAACAGGAAATTAACATTAGGATATTAACAATCCTCTTAATATCTATTAATATTTGATGATGCTGTCTAAAATCATTTGATTGT--CAGTTACTCTCTTAAAATGGTTTTCCCTTATTACA---CTAACATAATCGTATATGCAGTTTAGTTAATTATCGTCAAGACTTTACTGTCTTAGGTAAAATGTTGCTCAAATTCATCTCTCAGCTTTGTATCAGCACAAGATCACCTCTTGCTCATTGTCAAATGTGACACAATATCATAAATGGCACATCATCCTTGCATCATCCTTACTTACTTACAGTGTGTGAGTTTCTTTACTC---TTTTTTTCTCTTTATTTAGATTAAAGAAAACAGGTATAGGTCAGTATTTGAAAAATA--AAGCTCACAACAGTTCTTTATGACCAGAATCAAAGTGT-GTGTTCTATTAATCAAGATTTG-TCTCTCAGAAGTTTGGTGATCTGTTAAAAT--ATATATATTATCAGTGT-CAAGT-ATTTTAGTCCCACTTGTCACTAACTTAATGACAGCATTGCCTAGGGATTTCATGGGCAACAAAACTGTTGGTTTAGCCTCATAATTTTGGAACATATTAAAAATATTTTCTTGCTATCAACACTT-AGATTT-AAATAGAGTTTCTATTTCAATCGTGCCAATTTTTAAACATTGAAATCCACTGCAATGAAACAAATATCAAACCTCACATGGACATTTTACTCTTCGGCTGTTTTCATATTTTGCT---CACATTTTGCAAGGAACTCAGAGATCCAAAAGAAATATCCTTAACTCTTTCACGGCCAAGCCCTATGATCAAACACACAGGAAATAATCTATGGATTATAATAATCAAAGAGTTCTAGAGGATTTCTAAATATGTGCAGGA-AGAAAAT---CTGTGTG-CTTTTTCAGTAAACTGCAGCAATCAGGAAAGACGAGAAAAACCCCTTGCACAATCATG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16820079 3544 + 184069350 TAAGTATTTATATGTCTAGCC-TGTGG-TGACTTGT-CCCACAATA-CTTCAATGATGTC-----AAGTTTAAGGCTGGAAACCACTCAGTGAAAACTTGTGAAACATATGT----------CAAATGTGCACCATCTC----T---CTCTCTCATCCTTTGATCTAAAGCTCTCTAC-------------TTG-ATGGAAT--GATGAATTCTTACCTCCTGCTTTTA-----ATAATTTCACAAAATTTGAAATACTTTAACCCAGTAGTTAAACAGCAATTCAGTGTTTCACAGAATTTTGGGGTTTAAATTGCTTTTGCTTCCCTTAGGTGGAGAATTGAACTTGGACATGCCTATAACTTTCAGGCCTGAAGCCTGAAACAGAGCTCCAGGCAATAACCACCACACACATATATTTGGGGAATTCTTGCTAAT--------AGAAAAATGTGTTCAGGTCTTGACTTTTCAAGCAAACAACATACAGAATAT----TGAAAAATGTCAAAACAACCTTCAAATAAGTACC-----------CTAAAACATGACAATACTAAATTTTGCACATAAAGAAGAAACAGTTCAAAAACATGATATCAG---CAATAACATTCATCC-TTCTCAATGGGGCG------GCATTCATATGATAGGGTGTTGTATGGGTTCCTAT---------------------------------------------GATACACAAATCATTCATATGATAGGGTGTTGTATGGGTTCCTATGATACACAAATTGCCCACTGA---------------TAGAAGCATCATATTCTTGGAG---CAATCC-TAAGACCTATCTCCATTTATTTAGGTGTACAAGAATATAT-----TGGGTAGCATGAGCCTCATCTAGAATTGAATGTAATATGGTACATCAAG-------AGGCAGGTCTCAAACTGAGAAGAAAACAGGATACTTGATC---------------CTACAATGAA----------------CTGAGGTCATTAACTTGTAATATTGGCATATGGATTTCTGTGATTTACTATACATAACAAATAAATTTTTTA-------------------------AATGCTTGTGTTTTTATGATTA-----ATACAGACATTACATATG--------------------------------------------TTTGT----------------------AAAATACACTCTTTGAGAAGTGATTTGCCATGATAAAAAAATATG--TAGGAAGTTTCAGGGAAAATAGATGTATCTTATTTTAGCTGGACAG-ATATTTACCTTTGAATCTGTA--CTCtttaaaaaa---attattttagaaatcaaat------------taaatttttaatt-------tGTAAGCAATCCTAGGCATTGCCAAAAC-TTACATGAAAAGCTCTCACAAAAGGAAACTGCTTTTCTCTAACTTGTGATAACACTAATAAGACAAATTGAAGGAAAGTTTGT----ATCCACAAAAGTTTCTTTGCACTTCCAATGTTCTATGTTTATATAA----ATGGCCCATTTTGGCATCAAATGAGAAGCAGCTGTCA-AAAATA-AAATTATGTATTTCAGAATTAACCTGTTTTCAAATGTAAAACAAAATCACTATTTCCTCAGATAACATGATTGACCAAAAA----AATAA----------------------AAATAAAGGGATTGTTGGTAAAAAG---AAAAAAATCACCCAAGACATGTTCGTGCTGTTTTAAATTTTTGATAACTACAAAGATGCATGCTGATTGCTCAGGATACGATTAGCGGCTGCCTGCATATCCAACTTTAAAGGAAATTTTTTAAGCTAGTTCAACTC-TGTTTCCTACTTCTTCATTAATTACTTAGCTAAAGGACTTGAAAATGTCCTAATGAATTTTACATTAGACTCTGCAATATCAATGGTGTATATTACCACAGCATCTAGCAAATGCATAAATTGACTTTTCCAAGTAGCATTTTGAGGAGTTGTAAAGATTCTGGGTGGATATCACAAAATTTAGTATTAGCA-TTTTGAGGAGTTGTAAAGATTCTGGCTGGATATCACAAAATTTAGTATTA--GAGACTGAGCCGAAAAG-AATTTTTACAAGAAACAGGTTGCTGTAATCACATTTCTCAGGTCATAAATCTATGTTACTACTTTATGATAATCTGTCGGTCCTTGTTCTCAAAGTTCAAAGATGCTGTGCTTCTTTTTGTTT-------CTCCTGTGGTTCAAA---AAGAAAGCAATCCCACTTAGAGTGATTTCTAAATATGCATTGAATAAAGCTTAAAATATTGCTGCTATTCT-GCTTTCCATAATTTCCATATATTAAAGTAC---CATCCAGTGATAAAGTACCAACCACAGTAATTTGGATTTAATACCTATGGTTTACAGCTTCACAACCACTTACCATTTTCGTAAAATTCTTTGAAATCAAAAGTTTAAGAAAACTATTCAACAAACAGAATGAGCTAGACAGGCAGAAAACTGCACCTAAATCCAGTTAGAAACA---GATAGAACCTTAGGATTGCCCTATCAGAGAGGAAAGGACAGACAACCATGGAAACCTCATGGAAAGCTTTCTTTTATAAAATATTTCTCTAGTTTCATGGCAAGGTGAAAGATCACCTCTTGCTCAT---TTTCAAATGTGCCATGATACCATAAATGGTACATCATCCTTACTTGAATG-TTGAAAGCGAATAT---GCTGGTAACGTCAA--------------------AGTCATAGTGATGGGACTAAACATTTGTAATCTAAAGGTGAAGA-CCGCATGAGAACCACCACAGAGCTCCGAGCTGGCAAAAGTCAGATACAGACTCTCAACGATTATTCCTTAAAGAATATCCAAAGTCACCACAATTCACATTACCTAAAGATTAAAATGCGGATATTAACAGGAAATTAACATTAGGATATTAAAAATCCTCTTAATATCTATTAATATTTAATGAGGCTCTCTAAAATCATTTGATTGT--CAGTTATTCTCTTAAAATGGTTTTCCCTTATTACA---CTAACATAATTGCATATGCAGTTTTGTTAATTATCGTGAAGACTTTACTTTCTTAGGTAAAATGTTGCTCAAATTCATCTCTCAGCTTTATATCAGCAC---ATCACCTCTTGCTCATTGTCAAATGTGACATGATATCATAAATGGCACATCATCCTGACATCATCCTTACTTATTTACAGTGTGTGAGTTTCTTTACTC--TTTTTTTTCTCTTCAT-----TTAAAGAAGACAAATACAGGTCAGTATTTGAAAAATA--AAGCTCACAACAGTTCTTTACAACCAGAATCCAAGTATGGTGTTCTATTAACCAAGATTTG-TCTCTCAGAAGTTTGATGGTCCGTTAAAAA-TATATATATTATCAGTGT-CAAGTAATTTTGGTCCCACCTGTCACTAACTTAATGACGGCATTGCCTAGGAATTTCATGGGCAACAAAACTGTTGGTTTAGCCTCATAATTTTGGAACATTTTAAAAATACTTTCTTGCTATCAACACTTAAGATTT-AAATAGAGTTTCTATTTCAATCGTGCAAATTTTTAAACATTGAAATCCACTGCAATGAAACAAATATCAAACCTCGCATGGACATTTTACTCTACAGCTGTTTTCATATTTTGCT---CACAATTTGCAAGGAACTCAGAGATCCAAAAGAAATATCCTTAGCTCTTTCACGGCCAAGCCCTATGATCAAACACACTGGAAATAATCTGTGGATTATAA-----AAAGAGTTCTAGAGAATTTCTAAATATCTGCAGGA-AGAAAAT---CTGTATG-CTTTTCCAGTAAACTGCAGCAAGCAGGAAAGAAGAGAAAAACCCCTTGCACGATCATG i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20869891 3541 + 189454096 TAAGTATTTATATGTCTAGCC-TGTGG-TGACTTGT-CCCACAATA-CTTCAATGATGTC-----AAGTTTAAGGCTGGAAACCACTCAGTGAAAACTTGTGAAACATATGT----------CAAATGTGCACCATCTC----T---CTCTCTCATCCTTTGATCTAAAGCTCTCTAC-------------TTG-ATGGAAT--GATGAATTCTTACCTCCTGCTTTTA-----ATAATTTCACAAAATTTGAAATACTTTAACCCAGTAGTTAAACAGCAATTCAGTGTTTCACAGAATTTTGGGGTTTAAATTGCTTTTGCTTCCCTTAGGTGGAGAATTGAACTTGGACATGCCTATAACTTTCAGGCCTGAAGCCTGAAACAGAGCTCCAGGCAATAACCACCACACACATATATTTGGGGAATTCTTGCTAAT--------AGAAAAATGTGTTCAGGTCTTGACTTTTCAAGCAAACAATGTACAGAATAT----TGAAAAATGTCAAAACAACCTTCAAATAAGTACC-----------CTAAAACATGACAATACTAAATTTTGCACATAAAGAAGAAACAGTTCAAAAACATGATATCAG---CAATAACATTCATCC-TTCTCAATGGGGCG------GCATTCATATGATAGGGTGTTGTATGGGTTCCTATGATACACAAATCATTCATATGATAGGGTGTTGTATGGGTTCCTACGATACACAAATCATTCATATGATAGGGTGTTGTATGGGTTCCTATGATACACAAATTGCCCACTGA---------------TAGAAGCATCATATTCTTGGAG---CAATCC-TAAGACCTATCTCCATTTATTTAGGTGTACAAGAATATAT-----TGGGTAGCATGAGCCTCATCTAGAATTGAATGTAATATGGTACATCAAG-------AGGCAGGTCTCAAACTGAGAAGAAAACAGGATACTTGATC---------------CTACAATGAA----------------CTGAGGTCATTAACTTGTAATATTTGCATATGGATTTCTGTGATTTACTATACATAACAAATAAATTTTTTA-------------------------AATGCTTGTGTTTTTATGATTA-----ATACAGACATTACATATG--------------------------------------------TTTGT----------------------AAAATACACTCTTTGAGAAGTGATTTGCCATGAT-AAAAAATATG--TAGGAAGTTTCAGGGAAAATAGATGTATCTTATTTTAGCTGGACAA-ATATTTACCTTTGAATCTGTA--CTCTTTAAAAAA---ATTATTTTAGAAATCAAAT------------TAAATTTTTAATT-------TGTAAGCAATCCTAGGCATTGCCAAAAC-TTACATGAAAAGCTCTCACAAAAGGAAACTGCTTTTCTCTAACTTGTGATAACACTAATAAGACAAATTGAAGGAAAGTTTGT----ATCCACAAAAGTTTCTTTGCACTTCCAATGTTCTATGTTTATATAA----ATGGCCCATTTTGGCATCAAATGAGAAGCAGCTGTCA-AAAATA-AAATTATATATTTCAGAATTAACCTGTTTTCAAATGTAAAACAAAATCACTATTTCCTCAGATAACATGATTGACCAAAGA----AATAA----------------------AAATAAAGGGATTGTTGGTAAAAAG---AAAAAAATCACCCAAGACATGTTCGTGCTGTTTTAAATTTTTGATAACTACAAAGATGCATGCTGATTGCTCAGGATACGATTAGCGGCTGCCTGCATATCCAACTTTAAAGGAAATTTTTTAAGCTAGTTCAACTC-TGTTTCCTACTTCTTCATTAATTACTTAGCTAAAGGACTTGAAAATGTCCTAATGAATTTTACATTAGACTCTGCAATATCAATGGTGTATATTACCACAGCATCTAGCAAATGCATAAATTGACTTTTCCAAG-----------------------------------------------------TAGCA-TTTTGAGGAGTTGTAAAGATTCTGGCTGGATATCACAAAATTTAGTATTA--GAGACTGAGCCGAAAAG-AATTTTTACAAGAAACAGGTTGCTGTAATCACATTTCTCAGGTCATAAATCTATGTTACTACTTTATGATAATCTGTCGGTCCTTGTTCTCAAAGTTCAAAGATGCTGTGCTTCTTTTTGTTT-------CTCCTGTGGTTCAAA---AAGAAAGCAATCCCACTTAGAGTGATTTCTAAATATGCATTGAATAAAGCTTAAAATATTGCTGCTATACTAGCTTTCCATAATTTCCATATATTAAAGTAC---CATCCAGTGATAAAGTACCAACCACAGTAATTTGGATTTAATACCTATGGTTTACAGCTTCACAACCACTTACCATTTTCATAAAATTCTTTGAAATCAAAAGTTTAAGAAAACTATTCAACAAACAGAATGAGCTAGACAGGCAGAAAACTGTACCTAAATCCAGTTAGAAACA---GATAGAACCTTAGGATTGCCCTATCAGAGAGGAAAGGACAGACAACCATGGAAACCTCATGGAAAGCTTTCTTTTATAAAATATTTCTCTAGTTTCATGGCAAGGTGAAAGATCACCTCTTGCTCAT---TTTCAAATGTGCCATGATACCATAAATGGTACATCATCCTTACTTGAATG-TTGAAAGCGAATAT---GCTGGTAACGTCAA--------------------AGTCATAGTGATGGGACTAAACATTTGTAATCTAAAGGTGAAGA-CCGCATGAGAACCACCACAGAGCTCCGAGCTGGCAAAAGTCAGATACAGACTCTCAACGATTATTCCTTAAAGAATATCCAAAGTCACCACAATTCACATTACCTAAAGATTAAAATGCGGATATTAACAGGAAATTAACATTAGGATATTAAAAATCCTCTTAATATCTATTAATATTTAATGAGGCTCTCTAAAATCATTTGATTGT--CAGTTATTCTCTTAAAATGGTTTTCCCTTATTACA---CTAACATAATTGCATATGCAGTTTTGTTAATTATCGTGAAGACTTTACTTTCTTAGGTAAAATGTTGCTCAAATTCATCTCTCAGCTTTATATCAGCAC---ATCACCTCTTGCTCATTGTCAAATGTGACATGATATCATAAATGGCACATCATCCTGACATCATCCTTACTTATTTACAGTGTGTGAGTTTCTTTACTC--TTTTTTTTCTCTTCAT-----TTAAAGAAGACAAATACAGGTCAGTATTTGAAAAATA--AAGCTCACAACAGTTCTTTACGACCAGAATCAAAGTATGGTGTTCTATTAACCAAGATTTG-TCTCTCAGAAGTTTGATGGTCCGTTAAAAA-TATATATATTATCAGTGT-CAAGTAATTTTGGTCCCACCTGTCACTAACTTAATGACGGCATTGCCTAGGAATTTCATGGGCAACAAAACTGTTGGTTTAGCCTCATAATTTTGGAACATTTTAAAAATACTTTCTTGCTATCAACACTTAAGATTT-AAATAGAGTTTCTATTTCAATCGTGCAAATTTTTAAACATTGAAATCCACTGCAATGAAACAAATATCAAACCTCGCATGGACATTTTACTCTACAGCTGTTTTCATATTTTGCT---CACAATTTGCAAGGAACTCAGAGATCCAAAAGAAATATCCTTAGCTCTTTCACGGCCAAGCCCTATGATCAAACACACTGGAAATAATCTGTGGATTATAATAATCAAAGAGTTCTAGAGAATTTCTAAATATCTGCAGGA-AGAAAAT---CTGTGTG-CTTTTCCAGTAAACTGCAGCAAGCAGGAAAGAAGAGAAAAACCCCTTGCACGATCATG i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16460184 3496 + 178775436 taagtatttaTATGTCTAGCC-TGTGG-TGACTTGT-CCCACAATA-CTTCAATGATGTC-----AAGTTTAAGGCTGGAAACCACTCAATGAAAACTTGTGAAACATATGT----------CAAATGTgcaccatctc----t---ctctctcatcctttgATCTAAAGCTCTCTAC-------------TTG-ATGGAAT--GACGAATTCTTACCTCCTGCTTTTA-----ATAATTTCACAAAATTTGAAATACTTTAACCCAGTAGTTAAACAGCAATTCAGTGTTTCACAGAATTTTGGGGTTTAATTTGCTTTTGCTTCCCTTAGGTGGAGAATTGAACTTGGACATGCCTATAACTTTCAGGCCTGAAGCCTGAAACAGAGCTCCAGGCAATAAccaccacacacatatatttggGGAATTCTTGTTAAT--------AGAAAAATGTGTTCAGGTCTTGACTTTTCAAGCAAACAACGTACAGAATAT----TGAAAAATGTCAAAACAACCTTCAAATAAGTACC-----------CTAAAACATGACAATACTAAATTTTGCACGTAAAGAAGAAACAGTTCAAAAACATGATATCTG---CAATAACATTCATCC-TTCTCAATGGGGTG------GCATTCATATGATAGGGTGTTGTATGGGTTCCTAC---------------------------------------------GATACACAAATCATTCATATGATAGGGTGTTGCATGGGTTCCTATGATACACAAATTGCCCACTGA---------------TAGAAGTGTCATATTCTTGGAG---CAATCC-TAAGAcctatctccatttatttaggtgtACAAGAATATAT-----TGGGTAGCATGAGCCCCATCTAGAATTGAATGTAATATGGTACATCAAG-------AGGCAGGTCTCAAACTAAGAAGAATACAGGATACTTGATC---------------CTACAATGAA----------------CTGAGGTCATTAACttgtaatatttgcatatggATTTCTGTGATTTACTATAcataacaaataaatttttta-------------------------aatgcttgtgtTTTTATGATTA-----ATACAGACATTACATATG--------------------------------------------TTTGT----------------------AAAATACACTCTTTGAGAAGTGATTTGCCATGAT-AAAAAATATG--TAGGAAGTCTCAGGGAAAATAGATGTATCTTATTTTAGCTGGACAA-ATCTTTACCTTTGAATctgta--ctctttaaaaaa---attattttagaaatcaagt------------taaatttttaatt-------tgtaagcaATCCTAGGCATTGCCAAAAC-TTACATGAAAAGCTCTCACTAAAGGAAACTGCTTTTCTCTAACTTGTGATAACACTAATAAGACAAATTGAAGGAAAGTTTGT----ATCCACAAAAGTTTCTTTGCACTTCCAATGttctatgtttatataa----atgGCCCATTTTGGCATCAAATGAGAAGCagctgtca-aaaata-aaattatatatttcagaattaacctgttttcaaatgtaaaacaaaatcacTATTTCCTCAGATAACATGattgaccaaaaa----aataa----------------------aaataaagggattgttggtaaaaag---aaaaaaatcacccaaGACATGTTCgtgctgttttaaatttttgataactACAAAGATGCATGCTGATTGCTCAGGATACGATTAGCAGCTGCCTGCATATCCAactttaaaggaaattttttaagCTAGTTCAACTC-TGTTTCCTACTTCTTCATTAATTACTTAGCTAAAGGACTTGAAAATGTCCTAATGAATTTTACATTAGACTCTGCAATATCAATGGTGTATATTACCACAGCATCTAGCAAATGCATAAATTGACTTTTCCAAG-----------------------------------------------------TAGCA-TTTTGAGGAGTTGTAAAGATTCTGGCTGGGTATCACAAAATGTAGTATTA--GAGACTGAGCCGAAAAG-AATTTTTACAAGAAACAGGTTGCTGTAATCACATTTCTCAGGTCATAAATCTATGTTACTACTTTATCATAATCTGTCGGTCCTTGTTCTCAAAGTTCAAAGATGCTgtgcttctttttgttt-------ctcctgTGGTTCAAA---AAGAAAGCAATCCCACTTAAAGTGATTTCTAAATATGCATTGAATAAAGCTTAAAATATTGCTGCTATACTAGCTTTCCATAATTTCCATATAATAAAGTAC---CATCCAGTGATAAAGTACCAACCACAGTAATTTGGATTTAATACCTATGGTTTACAGCTTCACAACCACTTACcatttttgtaaaattctttGAAATCAAAAGTTTAAGAAAACTATTCAACAAACAGAATGAGCTAGACAGGCAGAAAACTGCACCTAAATCCAGTTAGAAACA---GATAGAACCTTAGGACTGCCCTATCAGAGAGGAAAGGACAGACAACCATGGAAACCTCATGGAAagctttcttttataaaatatttctctagTTTCATGGCAAGGTGAAAGATCACCTCTTGCTCAT---TTTCAAATGTGCCATGATACCATAAATGGTACATCATCCTTACTTGAATG-TTGAAAGCGAATAT---GCCGGTAACGTCAA--------------------AGTCATAGTGATGGGACTAAACATTTGTAATCTAAAGGTGAAGA-CCGCATGAGAACCACCACAGAGCTCCGAGCTGGCAAAAGTCAGATACAGACTCTCAACGATTATTCCTTAAAGAATATCCAAAGTCACCACAATTCACATTACCTAAAGATTAAAATGCGGATATTAACAGGAAATTAACATTAGGATATTAAAAATCCTCttaatatctattaatatttaatgaGGCTCTCTAAAATCATTTGATTGT--CAGTTATTCTCTTAAAATGGCTTTCCCTTATTACA---CTAACATAATTGCATATGCAGTTTTGTTAATTATCGTGAAGACTTTACTTTCTTAGGTAAAATGTTGCTCAAATTCATCTCTCAGCTTTATATCAGCAC---ATCACCTCTTGCTCATTGTCAAATGTGACATGATATCATAAATGGCACATCATCCTGACATCATCCTTACTTATTTACAGTGTGTGagtttctttactc--ttttttttctcttcat-----ttaaagAAGACAAATACAGGtcagtatttgaaaaata--aagctcACAACAGTTCTTTACGACCAGAATCAAAGTATGGTGTTCTATTAACCAAGATTTG-TCTCTCAGAAGTTTGATGGTccgttaaaaa-tatatatattatcagTGT-CAAGTAATTTTGGTCCCACCTGTCACTAACTTAATGACGGCATTGCCTAGGAATTTCATGGGCAACAAAACTGTTGGTTTAGCctcataattttggaacattttaaaaatactttcttgcTATCAACACTTAAGATTT-AAATAGAGTTTCTATTTCAATCGTGCaaatttttaaacactgaaaTCCATTGCAATGAAACAAATATCAAACCTCGCATGGACATTTTACTCTACAGCTGTTTTCATATTTTGCT---CACAATTTGCAAGGAACTCAGAGatccaaaagaaatatccttaacTCTTTCACGGCCAAGCCCTATGATCAAACACACTGGAAATAATCTGTGGATTATAATAATCAAAGAGTTCTAGAGAATTTCTAAATATCTGCAGGA-AGAAAAT---CTGTGTG-CTTTTCCAGTAAACTGCAGCaagcaggaaagaagagaaaaaccccTTGCACgatcatg i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19943302 3465 - 48547382 TAAGTATTTATATGTCTAGCC-TGTGG-TGACTTGT-CCCACAATACCTTCAGTGATGTC-----AAGTTTAAGGCTGGAAACCACTCAATGAAAACTTGTGAAACATATGT----------CGAATGTGCACCA--------T---CTCTCTCATCCTTTAATCTAAAACTCTCTAC-------------TTG-ATGGAAT--GATGAATTCTTACCTCCTGCTTTTAATAATATAATTTCACAAAATTTGAAAAACTTTAACCCAGTAGTTAAACAGCAATTCAGTGTTTT-----------GGGTTTAAATTGCTTTTGCTTCCCTTAGGTGGAGAATTGAACTTGGACATGCCTATAACTTTCAGGCCTGAAGCCTGAAACAGAGCTCCAGGCAATAACCACCTCACACATATATTTGGGGAATTCTTGCTAAT--------AGAAAAATGTGTTCAGGTCTTGACTTTTCAAGCAAACAATGTACAGAATAT----TGAAAAATGTCAAAACAACCTTCAAATAAGTACC-----------CTAAAACATGACAATACTAAATTTTGCACATAAAGAAGAAACAGTTCAAAAACATGATATCTG---TAATAACATTCATCC-TTCTCAGTGGGATGTTGTATGGGTTCCTATGATACACAAAT-----CATTCATAT---------------------------------------------GATA--------------------GGGTGTTGTATGGGTTCCTATGATACACAAATTGCCCACTGA---------------TAGAAGCGTCATATTCTTGGAG---CAATCC-TAAGACTTATTTCCATTTATTTAGGTGTACAAGAATATAT-----TGGGTAGCATGAGCACCATCTAGAATTGAATATAATATGGTACATCAAG-------AGGCAGGTCTCAAACAGAGAAGAAAATAGGATACTTGATG---------------CTACAATGAA----------------CTGAGGTCATTAACTTGTAATATTTGCATATGGATTTCTGTGATTTACTATACATAACAAATAAATTTTTTA-------------------------AATGCTTGTGTTTTTATGATTA-----ATACAGACATTACAAATG--------------------------------------------TTTGT----------------------AAAATACACTCTTTGAGAAGTGATTTGCCATGAT-AAAAAACATG--TAGGGAGTTTCAGGGAAAATAGATGTATCTTATTTTAGCTGGACAA-ATCTTTACCTTTGAATCTGTA--CTCTTTAAAAAA---ATTATTTTAGAAATCAAAT------------TAAATTTTTAATT-------TGTAAACAATCCTAGGCATTGCCAAAAC-TTACATGAAAAGCTCTCACAAAAGGAGACTGCTTTTCTCTGACTTGTGATAACACTAATAAGACAAATTGAAGGAAAGTTTGT----ATCCACAAAAGTTTCTTTGCACTTCCAATGTTCTATGTTTATATAA----ATGGCCCATTTTGGTATCAAATGAGAAGCAGCTGCCA-AAAATA-AAATTATATATTTCAGAATTAACCCGTTTTCAAATGTAAAACAAAATCACTATTTCCTCAGATAACATGATTGACCAAAAA----AACAA----------------------AAATAAAGGGATTGTTGGTAAAAAG---AATAAAATCACCCAAGACATGTTTGTGCTGTTTTAAATTTTTGATAACTATAAAGATGCATGGTGATTGTTCAGGATACGGTTAGCAGCTGCCTGCATATCCAACTTTAAAGGAAATTTTTTAAGCTAGTTCAACTC-TGTTTCCAACTTCTTCATTAATTACTTAGCTAAGGGACTTGAAAATGTCCTAATGAATTTTACATTAGACTCTGCAATATCACTGGTGTATATTACCAGAGCATCTAGCAAATGCATAAATTGACTTTTCCAAG-----------------------------------------------------TAGCATTTTTGAGGAGTTGTAAAGATTCTGGCTGGATATCACAAAATTTAGTATTA--GAGACTGAGCCGAAAAG-AATTTTTACAAGAAACAGGTTGCTGTAATCACATTTCTCAGGTCATAAATCTATGTTACTACTTTATGATAATCTGTCGGTCCTTGTTCTCAAAGTTCAAAGATGCTATGCTTCTTTTTGTTT-------CTCCTGCGGTTCAAA---AAGAAAGCAATGCCACTTAAAGTGATATCTAAATATGCATTGAATAAAGCTTAAAATATTGCTGCTATACTAGCTTTCCATAATTTCCATATAATAAAGTAC---CATCCAGTGATAAAGTACCAACCACAGTAATTTGGATTTAATACTTATGGTTTACAGCTTCACAACCACTTACCATTTTCGTAAAATTCTTTGAAATCAAAAGTTTAAGAAAACTATTCAACAAACAGAATGAGCTAGACAGGCAGAAAACGGCACCTAAATCCAGTCAGAAAC-------AGAACCTTAGGATTGCCCTATCAGAGAGGAAAGGACAGACAACCATGGAAACCTCATGGAAAGCTTTCTTTTATAAAATATTTCTCTAGTTTCATGGCAAGGTAAAAGATCACCTCTTGCTCAT---TTTCAAATGTGCCATGATACCATAAATGGTACATCATCCTTACTTGAATG-TTGAAAGCTAATAC---GCCGGTAACGTCAA--------------------AGTCATAGTGATGGGACTAAACATTTGTAATCTAAAGGTGAAGA-CCGCATGAGAACCACCACAGAGCTCTGAGCTGGCAAAAGTCAGATACAGACTCTCAACGATTATTCCTTAAAGAATATCCAAAGTCACCACAATTCACATTACCTAAAGATTAAAATGCGGATATTAACAGGAAATTAACATTAGGATATTAACAATCCTCTTAATATCTATTAATATTTAATGAGGCTCTCTAAAATCATTTGATTGT--CAGTTATTCTCTTAAAATGGTTTTCCCTTATTACA---CTAACATAATTGCATATGCAGTTTTGTTAATTATCGTGAAGACTTGACTTTCTTAGGTAAAATGTTGCTCAAATTCATCTCTCAGCTTTATATCAGCAC---ATCACCTCTTGCTCATTGTCAAATGTGACATGATATCATAAATGGCACATCATCCTGACATCATCCTTACTTATTTACAGTGTGTGAGTTTCTTTACTC--TTTTTTTTCTCTTCAT-----TTAAAGAAGACAAATACAGGTCAGTATTTGAAAAATA--AAGCTCACAACAGTTCTTTACGACCAGAATCAAAGTATGGTGTTCTATTAACCAAGATTTG-TCTCTCAGAAGTTTGATGATCTGTTAAAAA-TATATATATTATCAGTGT-CAAGTAATTTTGGTCCCACCTGTCACTAACTTAATGACAGCATTGCCTAGGAATTTCATGGGCAACAAAACTGTTGGTTTAGCCTCATAATTTTGGAACATTTTAAAAATATTTTCTTGCTATCAACACTTAAGATTT-AAATAGAGTTTCTATTTCAATCGTGCAAATTTTTAAACATTGAAATCCACTGCAATGAAACAAATATCAAACCTCGCATGGACATTTTACTCTACAGCTGTTTTCATATTTTGCT---CACAATTTGCAAGGAACTCAGAGATCCAAAAGAAATATCCTTAACTCTTTCACAGCCAAGCCCTATGATCAAACACACTGGAAATAATCTGTGGATTATAATAATCAAAGAGTTCTAGAGAATTTCTAAATATCTGCAGGA-AGAAAAT---CTGTGTG-CTTTTCCAGTAAACTGCAGCAAGCAGGAAAGAAGAGAAAAACCCCTTGCACGATCATG i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21303369 3450 - 190850796 TAAGTCTTTACATGACTAGCC-TGTTG-TGGCTTTA-CCCATGGTAACTTCAATGATGTC-----AAGTGTAAGG--GGAAACCACTCAATGAAAACTTGCGAAA-----------------CAAATGTGCACCATCTCTCTGT---CTCTCTCCTCCTTTAATCTAAAACGCTCTAC-------------TTG-ATGAAAT--GATGAATTCTTATCTCCTGCTTTTAATAATATAATTTCATGAAATTTGAAATACCTTAACCCACTAGTTAAACAGCAATTCATTGTTTCATAGGGTTTTTAGGTTTAAATTGCTTTTTCTTCCCTTAGGTGAAGAATTGAACTTGGACATACCAATAACTTGCAGACCTGAAGTCTGAAACAGGACTCCAGGCAATATTCACCTCAGACATATGTTTGGGGAATTTTTGCTAATTCCCCAAATGAAAAATGTGTTCAGGTCTTGATTTTTTGAGAAAACAATGTACAGAATAT----TCAAAAATGTCAAAACAGCCTTCAAGTAAGTAACGATATTAAATTTTAAAACATAACGATAGTAAATTTTATACATAAAGGAGAAACAGTTT-GAAATACAATATCAT---CAATAACATTCACCC-TTCTCAACGGG-CA------GAATTTATAT----------------------------------------------------------------------GATA--------------------GTGTGTTGTCTGGGTTCCTATGATACACAAATTGCTCATTGA---------------TATAAGTGTCATATTCTTGGAG---CAATCC-TAAGACCCATCTCAATTTATTTAAATGTACAAGAATATAT-----TGGATAGCATGAGCCCCATCTAGACTTGAATATAATATGCTACATAAAG-------AGGCAGGTCTCAAACTGAGAAGAAATTAGGATAATTGATC---------------GTACAATGAA----------------CTGAAGCCATTAACTTGTAATATTTGCATATGGATTTCTGTGGTTTATTATACATAACAAAGAAACTTTTAA-------------------------AATGTGTATGTTTTTATGATAA-----ATATAGCCAGTATATATG--------------------------------------------TTTGT----------------------AAAATACACTCTTTAAGAAGTGATTTGCCACGAC-AAAAAATACG--TAGAAAGTTTCTGGGAAAAGAGATGTATCTTATTTTAGCTGGACAA-ATCTTTACCTTTGAATTTTTA--CTCACTGaaaaa---attattttagaaattaaat------------taaatttttaatt-------tGTAAGCAATCCTAGGCATTGCCAAAAC-TTACATGCAAAGCTTTCACAAAAGGAAATTGCTTTCCTCTACCTTGTTGCAACACTAATAAGACAAATTGAAGGAAAGTTTGA----ATTCATAAAAATTCCTCTGCAATTCCAATGTTCTGTGTTTATATAA----ATGGCCCATTTTGGTATCAAATGAGAAGCAGCTGCCA-AAAATA-AAATTGCATATTTCAGAATTAACCTGTTTT--AATATAAAACAAAATCACTATTTCCTCAGATAACACCATTGACCaaaaa----ataaa-----------aataaaaaaataaataaaGGGCTTGTTGGTAAAAAG---AAAAAGATCATCTAAGACATG-TCGTGTTGTTTTAAATTTTTGATAGCTACCAAGACATATGCTGATTGTTCAGGATACAATTAGCAGCTGCCTGCACATCCAACTTTAAAGCAAATTCTTAAAGCTAATTCAACTCTTGTTTCCTACTTCTTCATTAATTAC-TAGCTAAGGGACTTGAAAGTGTCCTAATGAGTTTTACATTAGAATTCACAATATGAATGGTGTATATTATCACACCATCTAGTAAATGCATAAATTGGC-TTTCCAAG-----------------------------------------------------TAGCA-TTTTGAGCAGTTATAAAGATTCTGGTTGGATATCACACAATTTAGTATTA--GAGACTGAGCTGAAAAG-AATTTTTACAAGAAACAAGTTGCAGCAATCATATTTCTCGGGTCATAAATCTATGTTACTACTTTATGATAATCTGTCAGTCCTTGTTCTCAAAGTT--------CTATGCTTCTATTTTTTTT------CTCCTGTGATTCAGAAAGAAAAAAGTGATCCCACCTACAGTGATTTCTAAATATGCAATGAATAAAGCTTAAAACATTGCTGCTATACTAGCTTTCCATAATTT-CATATTATAAAGTACCATCATCCACTGATAAAGTACCAACCACTGTATTTTGGAATTAATATTTATGGTTTACAGCTTCACAACCACTTACCATTTTCATAAAATTCTTTGAAATAAAAAGTTTAAAAATACTATCC-ATAAACAGAATAAGCTAGACAGGCAGAAAACTGCACCTAAATCCAGTAAGAAACA---GGTAGAACCTTAAATTTTCCCTAGCAGAGAGAA----ACAGACAACTATAGAAACCTCATGGAAATCTTTCTTTTATAAAATATGTCTCCAATTTCATGGCAAGGTAAAAGATCACCTCTTGCTCAC---TGTCAAATGTGACATGATATCATAAATGGCACATCATCCTCACTTGAATGTTTTAAAGCTAATAA---GAAGGCACTGTGAA--------------------AGTCAAATAGACAGGACTAAACGTTTGTAATCTAAAGGTGAAGA-CTGCGTGAGAAACACATTAGAGCTCCGAGCTGGCAAAAGTCAGAAACAGACTCTCAATGATTATGCCTTAAAAAGTATCCAAAGTCACCACAATTTGCACTACCTAAAGATTAAAATGTGGACAGTAACAGGAAATTAACATTATGATATTAACAATCCTTTTAATATCTGTTAATATTTCATAATGCTCTCTGAAATCAT----TTGT--CAGTTATTCTCTTAAAATGGTTTCCCCTTATCACA---CTAACATAATTATATATGCAATTTTATTAATTATCATCAAGACTTGACTTTCTTAGGTAAAGTGTTGCTCAAATTCATCTCTCAGCCTTATATCAGCAAAAGATCACCTCTTATTCATTTTCAGATGTGAC---ATATCATAAATGGCACATCATCCTTA-----------CTTACTTACAGTGTGT--GTTTCTTTACTA--ACTCTTTTCTCTTTAT-----TTAAAGAAAACAAATATAGGTCAATATTTGAAAAATA--AAGCTCACAACAGTTCTTTATGACCAGAATCAAAGTGTGGAGTTCTATTGACCAAGGTTTG-TCTCTCAGATGTTTGATGGTCtattaaaaa-tatatatattatCAGTGT-CAAGTAATTTTGGTCCCACCTGTCACTAACTTAATGACGGCATTGCCTAGGAATTTCATGGGAAACAAAACTGTTGGTTTAGCCTCATAATTTTGGAAGATCATAAAAATATTTTCTTGCTATCAACACTT-AGATTT-AAATAGAGTTTCTATTTCAATAGTGGAAATTTTAAAACATTGAAATTCACTGCAATGAAACAAATATCAAACCTCGCATGGACATATTACTCTTCAACTGTTTTCAGATTTTGCT---CACATTTTGCAAGGAACTCACAGATCCAAAGGAAATGTCCTTAACTCTTTCACTGCCAAGCCCCATGATCAAACACA--GAAAATAATCTATGGATTATAATAATCAAAGAGTTCCAGAGAATTTCTAAATACCTACAGGA-AGAAAAT---CTGTGTG-CTTTTCCAGTCAACTGCAGCAAGCAGGAAAGAAGAGAAAAACCCTTTGCACAATCATG i calJac3.chr3 I 16 C 0 s mm10.chr5 49281589 3362 + 151834684 TAACGCCTTACATGACTAACCTTGTGA-GGGCTCGA-TCCACAAGA-ACCAAATGGTATTGTGAAAAATTTAA-----GAGTTCTTTTATTCCAGTTATGT-AGACAAATGCATGTTTTCTCTATATCTGT-CCATCTA----T---CCTTTTCTTCCCTTCCTTTCTTACTCCCCATCCCTAGACTAAAGTTGTATGGAATAGGATGAATCCTTATTTTAT-CTTTTCATAGTATAATTTCATTAAATCTGAAGGGCTTAAATATGTTAGTTAAACAACAACTCCAAGCTTATCAGAATTTTC-TACTTAGGTCATTTTTGCTTCCCTTAAGTGAAGAACTGAACTTTAACACAACGAGAGCTTGCAGACCTGAAGCCTG-AACAGAGCTCAGGGCAATATCTACTTCAAGCATATGCTAAGAAAATTGTTCCTAAT--------AAGAAAATGTACCCAGGTCTTGCTTTTTAGAGAACATGATATAGATAATTTGGGGTAATAAATGTC-AAATAATGTTCAAATAAAAATC-----------ATTTTAAGTGCCAATACTGTTTTACAAGACGAAAGGAGAAGCAGTTC-AAAACTTGATGACTATGCCACCATCACCCATCT-TTGT-AATGGCATA-----AACAGTCATAA----------------------------------------------------------------------AATA--------------------GAGTGTGG--------------ATACACAAATTACCCATTGA---------------TAGGAGCATCAAATGCCTGTAGAGTCATCTC-CATAACCCATCTCCATTCACTTTGATGTACTAGAATATCTGTTTATCAGAAGCCCCATCCCCATCCATAATTAAATCCGATGTAGTATATCAGGAAAAAAAAAAAAAGAATCAAATGGAGAAGAA-ATAAGATAACTGACC---------------CTGCATTCAGTCTTGATACTCTGTACCAGAAGCCATTAACTTGTATCACTTGCTCTCCAATTTCTACAATTTAGAATCAAT-ACAAAGAATTTCTTAAAGATTTTACAATTTCAAGTAACACCAACATATGTGTTTTTATAAATATTCTTTTACATGTACTTCATTTTGCATTAAGATTCTGTTTTGCAACTCAGCAAGGGCTGGGATTCACTTTGCTCATGTGGCAGCCCCTGAGTTAAAAATCCACTCTCTGAGAAGTGATTTAATATGGA-AAGGAATGTACTTAAGAAGTTTTT-GGAAAGTGTGTATGTGTTATCTTGACTGAAAAATAAAGTTACAGTTGAATCTCTAATCACTCCCttaaa---attattttataaaattatttatttaCTGATGTACATATTTATTTATACCTACATAAATATTCAGAGGCACTGGCA-AGC-TTATATGAAAAGTTGGCAGCTAAGGAAATTGTTTCCTTCTTGCTGATGACATCACTAATGAGGTATGTCAAAAA-------TT----ATTCACA----TTTATATAGCTTTGTAATAATTTTTCTGTGTAT-------------ATTTCATAAAAAAATGAGATGCAATAGCCAGAAAATACAAACTTAGTGTTTCAGAATTAACCTGTTT--AAATGTAAAAGGGATGTTACAACTTCTCAGATAATGCCAC---CTCAGGA----ACTAA----------------------GGGTAAGAGCTTTGATGAGCAGAAC----AAAATGTCAGTCAACCCATGTTCATCCCATTTCAAAATTTTGATAACTACAAAGACATATGCTGATAGTTCAGGATCCAATTAGCAACCTCTTGCATATATAACCTTAAAGCAAAAATTTTAAACTGATTCAACCC-TGCTTCCAGCTCCCGCATTAATTAC-TAGCTCAGGGACCCAAAAGTGTTCTAATGAATTTTACATTAGAATCCACAATATGAACAAAGTATATTACCACAGCCACTAGTAAATGCATATGTTGGCACTTGCAAG-----------------------------------------------------CAGAA-TTCTGAACAGTTATGAAGAATCCAGCTGAGTTTCA---AATTTGTGATTACCATGCCAGAAGAGAAAAGAAAATTTCACAAGAACCTACTTGCCATAACCACGGTGCTGAGGACGCCAATCTCCCCTAATACCTAATGATAACCTTTAGCTCCTACTTCTCAAAGCGCAAAGGCACACGGC-------------------CTCCTGCGCTTCAGCACAAGGAAACAGCTCCCACCCACACTGACTTCTAAATGTGCAATGAATAAGCTTTAAAATCCTGTTTCTCTCCTAGCTTCCCACATTGTCACTAGA------------CAACCTGT------GTGCTGACTATA----CTCAGCATTAACATTTGTGCTTTACAACATCAAAACTA-TTGTCATCTCCACAAGG-CCTTTTAATTTAAAAGTTCAAGAAAACTGTTTTGCAAACAGAATAA-----ACAAACAGGGTACCAGGCATTATCCAAGCTCAAAATACTCGATAAAG-------------CTATTGGAGCA---------------CATGGAGACTT--------------TTTTATATACGATTTCTCTAATTTCATACCAAAATCAAGTATTATGTATTGAGCATTAGTGACAAATG-----TAATATTTTAAAGGACATACCATCCTTAGCAGAAAG-TAAAGAGCAAATAA---ACAAATAATAATAA--------------------AGGCATATTGATCAAAGTAAGT-----TGATC------TGAAGA-TTGTATTAGAAATACA--------CCTAACTTGGGAAAGTTGGGCACAGGGTGTCCATAATTATATCTTAAGTA--ATTAAGATTCTCCACACTGTACACTG-CTCAGGATCAGCATGTGAGTATTAAAAGGACATGAGCA--GGAGTAATAGGATTCCTATTACTATCCAGGGACAGTGAGTGGTACCCTCT----------GATTCC--CAGTTATCCTCTCAGGATACTTCTCCCCTTTCAGATTGCCAATATCACCACATATCCAGGTGTGCTAAGAAACAT----ACCACGTCTTCTCGAGATATATGCCG--CAAGTTCATCTCTAATGCTTGTATT-GCAC-------------------TGTCTA----------------------------------------------------------TGTTTATGTTT-----------CTTTTTCCTTATTAT-------------------------TCAG-ACTTGAAAAACACTACACTCCCAATAGTTCCCTGCAGCTAGAACCCAGGTGTAGTATAATATTAACACAGCTTTGTTTTCTCATAAGTTTGATGGTCCATTAACAA---TATCTGTCGTCAGAGG--GGCTAATTTTGGTCCTGCCTGGGTCTAAGTTAACGGCAGCA---CTCAGGAATTTCATGGGTAACAAATCTATTGGTCTAATCTCAGCATTTTGTAACATGTTAAAAATCTTTTCTTGAGAACAGCACAT-AGACTGAAAATAGAGTTTCTATTTCAATTATGTCAATGTTTAAACACTGAAATTCACCACAATGAAACAAATATCAACGCTCA---GAGCACGTTACTCTTCAGCTGTTTGCACATTTTTTTTCACATCTTTTCCAAGGAACTCAGAATTCTCAAAGAAATGTCCTTAACTCCTTCACTGCCGCGCACCAAGATCAAATAC--TGCGAACAATCTATGGATTATAAAGATCAAAGAGTTGGAGAGAATCTTTAACTGCTCGCAGGGTGGGCAGC---TTTTATG-CTTTTCCCAGAAACTGCAGCAAGC-------TAGGGGAATCCCCTTCACACAATTGTG i mm10.chr5 I 4 I 18 s canFam3.chr3 3871741 3350 - 91889043 TCAATCTTTATAACACTAGTCTTGTGGATGGCTTGATTTTGCAGTGACTTCAACAAT--------GAACATAAGGCTGGAAACAACTCAGTGTAAACTTG--AAA-----------------AAAGTGTGC-TCACTTC----TGGGCACTCTCTTC--TCAATCGAAAGTTTTCTAC-------------TTG-ATGAAGT--GATGTATGCTTACTTCATGCTTTTAATACTACCATTTCATTAAATTTGAAATACTTTAGCCCACAAGTTAAGTAGTAATTCAATGCTTAACAGGATACTGTGATTTACATTGCTTTCGCTTCCTTTAGGTGGAGAGTTGGACTTGGCCACACCTGTAACT---GGTCTTGAAGGCTGAAA-AGAGCCCTGGGCAATATCCACCTAAGACATATGTTTGGGGCATACTTGTTAAT--------AAGAAAATGACTTCAGATCTTGATTTTAAAAGAAAACTAGGTACATGGAAT----TGATAAATGTCCAAACACCCTCCAAATTAGTACT-----------ATAAAATATTACAATACTAAATTTCACATATAGAGAAGAAACAGGTC-AAAATCTGGTATCCG---CGATATCATCCAACCTTTCTTAATGGGTCA------GCATTTATAG----------------------------------------------------------------------GACA--------------------AGGTGTTCTATGCTTTCCTATGGTATACAAATTGCCTATCAAATTGAGCACTCACATTACCAGCATCATATT------A---CAATCCTTATAAATCATCTCCATTTATTTTGAGGTAGGAGAATACAT-----TGGCTATCATGAGCCCCATCTAGAATTGGGTATAATAGGATACATGAGG-------ATGCAGGTCCCAAAACAAGAAGGAATTTGGATAGTTAATCCTGTATTGTGCCTCACTACACTGAA----------------C--ACACCATTTACATGTAACATTTGCTTATGGATTTCTGACAAGTATTATATATAACAAAGGATCTTTAGA-------------------------AATGCTTCCATTTCCGTGATAA-----GTAAAGCTAATATATGCG--------------------------------------------TTTGT----------------------AAAATCTACCCTTTGAAGAGTGATTTGCTCTGAT---AAAATATG--TAAAATGTTTCTGGTAAAATAAA-----ATTATTTTATCTGGACAA-ATCTTTACCATTGAATTTATA--TTCTCTATCACAACCATTATTTTAGG--------------------TGAATTACTAATTACT----TACAAACAGTCATAGGCATTGTCAAAACTTTATGTGAAAAGCTTTCAGAAGAGGAAGCTACTTTCCTCCAAATTGTGATAACACCAATAAAACACATCAAAGGAGAGTTTGTTTGCATCCATGAACATTTCTTTGAGCTTA-AATTATCTGTGTTTGTGTAAAGGCATGGGCATTTGGGGAATCAAATGAAAGGCAACTACCA-ACAATACAGATTATGTATTTTGGAATTAACCTGTTTTCAAACATAAAACAAAATCACTATTTCCTCAGATCACATCTTTAATTGAAAA----AGTGA----------------------GAATAAAGAGCTTGTTGGTAAAATG-AAAAAAAAAGCATCCAAGGCATGCTGGTATTGTTTTAAATTTTTGATAACTACAAAGACATATGCTGATTGTTCAGGATACAATTAGCAACTGCTTGCATATCCAACCTTAAAGCAAATTTTTTAAACTAATTCAACTC-TGCTTCCTACTTCTTCATTAATTAC-TAGCCAAGGGACTTGAAAGTGTCCTAATGAATTTTACATTAGATCCTGCAATATGAACAGTGTATATTATCACAGCATCTTGTAAATGCATAAATTGGCTTCTCCAAG-----------------------------------------------------TTGCA-TTTTCAGTGGTTGTAAAGATTCCGGCTAGATCTTACAGTGTTCAGTATTA--GAGCCTGAGCTGAAAAG--ATTTTTAAAAGAAACAAGTTGCTGTAATCACATTTCTCAGGCCGTAAATCTATCTTACTACTGTATAATAATCTG----CCCTATTTCTCAAAGTT-------------CTTATTTTTTTT--------CTCTTGTGGCTCAGAAAGAGG--AGGAGTCCCACCCATATTGATTTCTAAATATGCATTAAATAAGTCTTGAAAAATTGCTGCTATGCCAGCTTTCCATAAATTTCATTTTATAAATTAC---CATCCAGTCATTGGACAC---CCACTGTCTTTTGGAGTCAGTATTTATGGTTTACAACTTCACAACCATTTACCATCTTCATAAGATTCTTTGAAAATGAAAGTTTAAGGAAAA-----GAGACACAGATCGAGCAGAAAAGGCAGAGAACTGCACCTAAACCCAGCACGAAACA---GGTAGAACCTTAAAATTGCCTTGCCAAAGAGAAAAATACAGACTACCATGGAAACCTCATAGAAAGCTTTCTTTTTAAAAATATATCTCTAATTTGATAGCAAGATAACAGATCACATACCGAGCAC---TGTCCAATGAGACACAGCATCACAAAAGGCACTCCATCCTTAATGGGAAG-TTTAAAACAAATATCACATGGATATCATTGATCACATTGATATGATAAAGCAGTCATACTTATGGGACTCTGTAGGGGTAACAGAAATCTAAAAATCTGGGTGGAAAATACAACAGAGCTCAAAGTTAACAAAAGTCAGGTACAGACTCTCAGTGGTTA--CTTTTAAAAGCATCAGAAGTCACCACAATTTGCACTGCTTAAAGATTAGCAC-CGGA----------------------------TAACAATCCCAATAACGTTTATACATATTTTGT---GCTCCCAGCAATTGATTGATTTTCACATTTATTCTCTCAAAAGCATTTTTCCTTATCATGTTGTTGACAGAATCATATATGTAGTTCTGCCGTTAACCATTAAGAGTTCATTTCCTGGAGC-AAATGTTGCTCACATTCATCTCTCA---------------------------------------------------------------------ACCCCTGCATCAT--------------AATGTATAGGTTTACTTACTAGTCCTTCTTTCTAATTAT-----TTAAAGAAAATCAATCTGAGTTGG-----AAAAAATA--AAGCTAACAAGAGTTCTTCACGGTCAGAATCAAACTATAGCGTGTTACCAAGCAAGCTTTG-TCTCTCAGAAGTTTGATGGTCCATTAAAAA---TACCTTTCGTCGGAGTCCAAGT-AGTTTGGGTCCACCTGCCACTATGTTAATGATGGCACTGCCTACCAATTTCAGGGGCAGCAAAACTGCTGGTTTGGGCTCAGAATTCTGGAACATCTTAAAAATATTTTCTTGCTATCAACACTT-AGATTT-AAATAGAATTTCTATTTCAATCGTGCAAATTTTTAAACATCAAAAT-AACTGCAATGAAACCAATATCAAACCTCTCATGGACATTTTACTCTTTAGCTGTTTTCACATTTTGCT---CACATTTTGCAGGAAACTGAGAAATTCCAGAGAAACGGCCTTAACTCTTTCACTGCCAAGCTCTATGATCAAATAC--TAGAAATCATCTCTGGATTATAATGATCAAAGAGTTCCAGAGAATTTCTAAATACCTACAAGA-AGACAACAGATTAAGTGATTTTTCCAACAAACTGCAGCAAGCAGGAGAG-AGAGAGAAACCCCTCAGACAAGCATG i canFam3.chr3 C 0 C 0 a score=31608.000000 s hg38.chr4_KI270790v1_alt 182893 15 + 220246 TATTT-----AAAAAAAAAA-- s panTro4.chr4 21571843 14 + 193495092 TATTT-----AAAAAAAAA--- i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21747386 15 + 198332218 TATTT-----AAAAAAAAAA-- i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20356727 15 - 85365473 TATGA-----AAAAAAAAAA-- i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16823623 20 + 184069350 tatttaaaaaaaaaaaaaaa-- i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20873432 20 + 189454096 TATTTAAAAAAAAAAAAAAA-- i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16463680 19 + 178775436 tattt-aaaaaaaaaaaaaa-- i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19946767 19 - 48547382 TATTA-AAAAAAAAAAAAAA-- i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21306819 16 - 190850796 TATTA----AAAAAAAAAAA-- i calJac3.chr3 C 0 C 0 s canFam3.chr3 3875091 17 - 91889043 CATTT-----AAAAAAAAAAAA i canFam3.chr3 C 0 C 0 e mm10.chr5 49284951 18 + 151834684 I a score=8673260.000000 s hg38.chr4_KI270790v1_alt 182908 2333 + 220246 TCTTTCTACTCTGCAGATACTGTTTCCTGAA----------ATTT----------ACCAAGAACACTGCCTTGAAGAGAT-AAAAAAA-----ATACATCCATAGAAGTCAGTTCTACCCCCAAA---AGAGCTGCACTGCACACATTTTTAGAAACATAAATCTCAGCAAAT----ACAGTTGCATTTTATTGACAACATTAAAAATA---ATCACAACAAAGAAATAG-----CCTTTCCTATTCCATTTCAACTTCATTACCATGCTCTACTAGCCTCTACT---------a---aaaaaaaaaaaaaaaaaaaaaaaa--------------------GTCATTACCTGTATGAAGAGAACCTGTTAATAGTCTGAGAAGGTACTGGGCAAATTTCAGTATTTCACGTTTACACCGCTTTCTACAGCCACTCATCTTAAGCAACAAGGTATTCCTCTGAGGAGAGCCAGAAGTCTTTGCCaataataataataata----------------ataataaaaaGAGAGTCTCTGAGGAGAAACTTCTGTCTCAGTTTATG-CA-CAGGCTGCCTTACAACTCCTGTGGAATTAGCTGTTAGCGCCTCAATCAGAAATTCCTTT---AAAATGCTAGAGAAGCCAGATACAGCTACAACAGTAACAGGGAGGTGAGAAAACACGGCTTCTCAGTGTGGTGACCAAGTTCTTCTGTGGCAACAGACAGGCTGCCGGTTCACACTTGTAGTAACCCAGCTCTGGTTCGGCTCGGCATCCCCTCTCCAGAAGCAGTTGCAACCTCACAGACCATTCAGAGGGAGGCGGGGCCTGCGATGCCAGCTCATCAGTGAATCAGCATGTAAGCAGGTGAGAAGACAGATGACAGGTCACTGGGTCTGAAACCCTTCCGATACCAATAAAGGGAACCTGCGAGTGCACTCCAGCCTGC-TGGGGAGGAATCTCAGGG-CCCGAGGCTGTACAAAATGAAT---GATTCCC--------AAAAAAAGGAGGTGGGGAGAGGGAAGCATGCTGCTCAAGGTCAGACATCAGACAACTCCCTTGACACAGTGTTAATCAGATTCAGGAAGGCTACATGGG-----GGAAAGGCTCATTTGAGAAGCTGACCCTGATTCTAAACA----GACTTGACGATTTACCACCAAATGGGGACAATGCTATTTTGTCAGGGATAAATGTATTCTTCTTCATGGGCTTAGAGGGAGAAAACAAGCTGTTTCTTAAAACTGGCTACATTTTCTGCACAGCGC--GGGCTCAGGTATTTGGAAATTAGGATACATAATTGTCTCCTTTAA-AACACAGTAGCCTAGAAACCAGAAATCTTAAG-CCCTTTACATTGCCTCCAGGCAA-CAGAGCTCCAAAACTAATTTACTGCGTTGTCCTAAGAGAAAGAAGTGCCTCAGTTTCTTCATATTTCAAAAAGGC-AAACACAAC----CATCTCCCTACCAATCAAC-TTTTTTAAAGTTAATAGCCAGAACAATTGCAAGGATTTGCAATTTTCACAAAGTACTTTCCTTTTAA-GA-CATTGGGATAGAGGCAG---TTGCTGTGAAAGCCAGAAAACTACAGGCTTGCCTTCTCTGAA---AAAGTGGTT-TTCCTG-----AATTCTTAAGTGCCTTAGGCAGTTTTCGGGATTTGTCTACACTCTTAATTTATACTCCTAGAGTTT---GTTTA-TTTTTGTTTATTCTGAATAAATATAAATATTATATCTGTGAGATTTAGCACAGATGGGG----------CCATATTTTAAATACCTAGACAGGCCTTTTGGCTTCTTTTTCTGACAGTTGCAATAATTCTAGTTGAAACTGATAATTCCCAACAGTACTACATAAGAAATTATGTTCTT---CTACACTAAAGAAAGA---ACTCCTGGACTCATAGACTGAAACACATTGAA-TGGAAACTCATTCTCTTCTAGAACTCTTCCCCATTCCCACCAGTCTCAGGG---TTCTAACCATTCTAACCATTTAAATG---GAATAACAAAGCATGCATTCTAGGAATTTTCAGAACTTTAATTGAAATTATTTAAGATATAAATAGACTCATACACAAAAATCAGCAACGTGCTTTC-TGAAGTTCTTTCTCCTACACATTTACCATGAGTGATGGCATC-----CCTAAGTTTGAAATAGGCAGAAGAAATACACAAT--TGTAGTTCAACAGTTGGTTTAATTAGTtgaacaccccatttccttatctacaaaagtgggaatagaatgcatattttatttacttgttggagagtaaaataagata---------------gggaatggacaa--------------cctta--------------------agcacagcacttTTa-----------------ttcatagatgtagc---aattctatact------gaacaccta---------------------------ttatgttccagacatggttctat-gtgctggga-----------------------aaacagtgg---------------------------------------------------------taactgagaaaggcaaagcctct--------------gttctcatgcagcttacacctaaaca-------------------------aagaaaacatcaggttatc s panTro4.chr4 21571857 2331 + 193495092 TCTTTCTACTCTGCAGATACTGTTTCCTGAA----------ATTT----------ACCAAGAACACTGCCTTGAAGAGAT-AAAAAAA------TACATCCATAGAATTCAGTTCTACCCCCAAA---AGAGCTGCACTGCACACATTTTTAGAAACATAAATCTCAGCCAAT----ACAGTTGCATTTTATTGACAACATTAAAAATA---ATCACAACAAAGAAATAGT-GAGCCTTTCCTATTCCATTTCAACTTCATTACCATGCTCTACTAGCCTCTACT---------a---aaaaaaaaaaaaaaaaaaaaaaaa-------------------aGTCATTACCTGTATGAAGAGAACCTGTTAATAGTCTGAGAAGGTACTGGGCAAATTTCAGTATTTCACGTTTACACCGCTTTCTACAGCCACTCATCTTAAGCAACAAGGTATTCCTCTGAGGAGAGCCAGAAGTCTTTGCCAATAATAATAATAA-----------------------AAAAAGAGAGTCTCTGAGGAGAAACTTCTGTCTCAGTTTATG-CA-CAGGCTGCCTTACAACTCCTGTGGAATTAGCTGTTAGCGCCTCAATCAGAAATTCCTTT---AAAATGCTAGAGAAGCCAGATACAGCTACAACAGTAACAGGGAGTTGAGAAAACACGGTTTCTCAGTGTGGTGACCAAGTTCTTCTGTGGCAACAGACAGGCTGCCGGTTCACACTTGTAGTAACCCAGCTCTGGTTCGGCTCGGCATCCCCTCTCCAGAAGCAGTTGCAACCTCACAGACCATTCAGAGGGAGGCGGGGCCTGCGATGCCAGCTCATCAGTGAATCAGCATGTAAGCAGGTGAGAAGACAGATGACAGGTCACTGGGTCTGAAACCCTTCGGATACCAATAAAGGGAACCTGCGAGTGCACTCCAGCCTGC-TGGGGAGGAATCTCAGGG-CCCGAGGCTGTACAAAATGAAT---GATTCCC--------AAAAAAAGGAGGTGGGGAGAGGGAAGCATGCTGCTCAAGGTCAGACATCAGACAACTCCCT-GACACAGTGTTAATCAGATTCAGGAAGGCTGCATGGG-----GGAAAGGCTCATTTGAGAAGCTGACCCTGATTCTAAACA----GACTTGATGATTTACCACCAAATAGGGACAATGCTATTTTGTCAGGGATAAATGTATTCTTCTTCATGGGCTTAGAGGTAGAAAACAAGCTGTTTCTTAAAACTGGCTACATTTTCTGCACAGCGC--GGGCTCAGGTATTTGGAAATTAGGATACATAATTGTCTCCTTTAA-AACACAGTAGCCTAGAAACCAGAAATCTTAAG-CCCTTTACATTGCCTCCAGGCAA-CAGAGCTCCAAAACTAATTTGCTGCGTTGTCCTAAGAGAAAGAAGTGCCTCAGTTTCTTCATATTTCAAAAAGGC-AAACACAAC----CATCTCCCTACCAATCAAC-TTTTTTAAAGTTAATAGCCAGAACAATTGCAAGGATTTGCAATTTTCACAAAGTACTTTCCTTTTAA-GA-CATTGGGATAGAGGCAG---TTGCTGTGAAAGCCAGAAAACTACAGGCTTGGCTTCTCTGAA---AAAGTGGTT-TTCCTG-----AATTCTTAAGTGCCTTAGGCAGTTTTCGGGATTTGTCTACACTCTTAATTTATACTCCTAGAGTTT-CTGTTTA-TTTTTGTTTGTTCTGAATAAATATAAATATTATATCTGTGAGATTTAGCACAGATGGGG----------CCATATTTTAAATACCTAGACAGGCCTTTTGGCTTCTTTTTCTGACAGTTGCAATAATTCTAGTTGAAACTGATAATTCCCAACAGCACTACAAATGAAATGATGTTCTT---CTACACTAACGAAAGA---ACTCCTGGACTCATAGACTGAAACACATTGAA-TGGAAACTCATTCTCTTCTAGAACTCTTCCCCATTCCCACCAGTCTCAGGG---TTCTAACCATTCTAACCATTTAAATG---GAATAACAAAGCATGCATTCTAGGAATTTTCAGAACTTTAATTGAAATTATTTAAGATATAAATAGACTCATACACAAAAATCAGCAACATGCTTTC-TGAAGTTCTTTCTCCTACACATTTACCATGAGTGATGGCATC-----CCTAAGTTTGAAATAGGCAGAAGAAATACACAAT--TGTAGTTCAACAGTTGGTTTAATTAGTtgaacaccccatttcattatctacaaaagtgggaatagaatgcatattttatttacttgttggagagtaaaataagata---------------gggaatggacaa--------------cttta--------------------agcacagcacttTTa-----------------ttcatagatgtagc---aattatatact------gaacactta---------------------------ttatgttccagacatcattctat-gtgctggga-----------------------acacagtgg---------------------------------------------------------taattgagaaaggcaaagcctct--------------gttctcatgcagcttacacctaaaca-------------------------aagaaaacatcaagttatc i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21747401 2350 + 198332218 TCTTTCTACTCTGCAGATACTGTTTCCTGAA----------ATTT----------ACCAACAACACTGCCTTGAAGAGAT-AAAAAAA-----ATACATCCATAGAATTCAGTTCTACTCCCAAA---AGAGCTGCACTGCACACATTTTTAGAAACATAAATCTCAGCAAAT----ACAGTTGCATTTTATTGACAACATTAAAAATA---ATCACAAGAAAGAAATAGT-GAGCCTTTCCTATTCCATTTCAACTTCATTACCATGCTCTACTAGCCTCTACT---------G---aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaGTCATTACCTGTATGAAGAGAACCTGTTAATAGTCTGAAAAGGTACTGGGCAAATTTCAATATTTCACGTTTACACCGCTTTCTACAGCCACTCATCTTAAGCAACAAGGTATTCCTCTGAGGAGAGCCAGAAGTCTTTGCCAATAATAATAATAA----------------------AAAAAAGACAGTCTCTGAGGAGAAACTTCTGTCTCAGTTTATG-CA-CACGCTGCCTTACAACTCCTGTGGAATTAGCTGTTAGCGCCTCAATCAGAAATTCCTTT---AAAATGCTAGAGAAGCCAGATACAGCTACAACAGTAACAGGGAGGTGAGAAAACACGGCTTCTCAGTGTGGTGACCAAGTTCTTCTGTGGCAACAGACAGGCTGCCGGTTCACACTTGTAGTAACCCAGCTCTGGTTCGGCTCGGCATCCCCTCTCCAGAAGCAGTTGCAACCTCACAGACCATTCAGAGGGAGGCGGGGCCTGCGATGCCAGCTCATCAGTGAATCAGCATGTAAGCAGGTGAGAAGACAGATGACAGGTCACTGGGTCTGAAACCCTTCGGATACCAATAAAGGGAACTTGTGAGTGCACTCCAGCCTGC-TGGGGAGGAATCTCAGGG-CCCGAGGCTGTGCGAAATGAAT---GATTCCC--------AAAAAAAGGAGGTAGGGAGAGGGAAGCATGCTGCTCAAGGTCAGACATCAGACAACTCCCT-GACACAGTG-TAATCAGATTCAGGAAGGCTTCATGGG-----GGAAAGGCTCATTTGAGAAGCTGACCCTGATTCTAAACA----GACTTGATGATTTACCACCAAATGGGGACAATGCTATTTTGTCAGGGATAAATGTATTCTTCTTCATGGGCTTAGAGGCAGAAAACAAGCTGTTTCTTAAAACTGGCTACATTTTCTGCACAGCGC--GGGCTCAGGTATTTGGAAATTAGGATACATAATTGTCTCCTTTAA-AACACAGTAGCCTAGAAACCACAAATCTTAAG-CCCTCTACTTTGCCTCCAGGCAA-CAGAGCTCCAAAACTAATTTGCTGCGTTGTCCTAAGAGAAAGAAGTGCCTCAGTTTCTTCATATTTCAAAAAGGC-AAACACAAC----CATCACCCTACCAATCAAC-TTGTTTAACG-TAATAGCCAGAACAATTGCAAGGATTTGCAATTTTCACACAGTACTTTCCTTTTAA-GA-CATTGGGATAGAGGCAG---TTGCTGTGAAAGCCAAAAAACTACAGGCTTGCCTTCTCTGAA---AAAGCGGTT-TTCCTG-----AATTCTTAAGTGCCTTAGGCAGTTTTCAGGATTTGTCTACACTCTTAATTTATACTCCTAGAGTTT-TTGTTTA-TTTTTGTTTGTTCTGTATAAATATAAATATTATATCTGTGAGATTTAGCACAGATGGGG----------CCATATTTTAAATACCTAGACAGGCCTTTCGGCTTCTTTTTCTGACAGTTGCAATAATTCTAGTTGAAACTGATAATTCCCAACAGTACTACATATGAAATGATGTTCTT---CTACACTAAAGAAAGA---ACTCCTGGACTCATAGACTGAAACACATTGAA-TGGAAACTCATTCTCTTCTAGAACTCTTCCCCATTCCCACCAGTCTCAGGG---GTCTAACCATTCTAACCACTTAAATG---GAATAACAAAGCATGCATTCTAGGAATTTTCAGAACTTTAATTGAAATTATTTAAGATATAAATAGACTCATACACAAAAAGCAGCAACATGCTTTC-TGAAGTTCTTTCTCCTACACATTTACCATGAGTGATGGCATC-----CCTAAGTTTGAAATAGGCAAAAGAAATACACAAT--TGTAGTTCAACACTTGGTTTAATTAGTtgaacaccccatttccttatctacaaaagtgggaatagaatgcatattttatttacttgttggagagtaaaataagata---------------gggaatggacaa--------------cctta--------------------agcacagcacttTTa-----------------ttcatagatgtagc---aattatatact------gagcaccta---------------------------ttatgttccagacatggttctat-gtgctggga-----------------------acacagtgc---------------------------------------------------------taactgagaaaggcaaagtctct--------------gttctcatgcagcttacacctaaaca-------------------------aagaaaacatcaagttatc i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20356742 2294 - 85365473 TCTTTCTACTCTGCAGATACTGTTTCCTGAA----------ATTT----------ACCAACAACACTGCCTTGAAGAGAT-AAAAAAA--AAAATACATCCGTAGAATTTAGTTCTACCCCCAAA---AGAGCTGCACTGCATACATTTTTAGAAACATAAATCTCAGCAAAT----ACAGTTGCATTTTATTGACAACATTAAAAATA---ATCATAACAAAGAAATAGT-GAGCTTTCCCTATTCCATTTCAACTTCATTGCCATGCTCTACTAGCCTCTATT---------A---AAAAAAAAAAA---------------------------------GTCATTACCTGTATGAAGAGAACCTGTTAATAGTCTGAGAAGGTACTGGGCAAATTTCAACATTTCACGTTTACACCGCTTTCTACAGCCACTCATCTTAAGCAACAAGGTATTCCTCTGAGGAAAGCCAGAAGTCTTTGCCAATAATAATAATAA---------------------AAAAAAAGACAGTCTCTGAGGAGAAACTTCTGTCTCAGTTTATG-CA-CAGGCTGCCTTACAACTCCTGTGGAATTAGCTGTTAACGCCTCAATCAGAAATTCCTTT---AAAATGCTAGAGAAGCCAGATACAGCTACAACAGTAACAGGGAGGTGAGAAAACACGGCTTCTCAGTGTGGTGACCAAGTTCTTCTGTGGCAACAGATAGGCTGCCGGTTCACACTTGTAGTAACCCAGCTCTGGTTCTGCTCGGCATCCCCTCTGCAGAAGCAGTTGCAACCTCACAGACCATTCAGAGGGAGGCGGGGCCTGCGATGCCAGCTCATCAGTGAATCAGCATGTAAGCAGGTGAGGAGACAGATGACAGGTCACTGGGTCTGAAACCCTTCGGATACCAATAAAGGGAACCTGCGAGTGCACTCCAGCCTGC-TAGGGAGGAATCTCAGGG-CCCGAGGCTGCACAAAATGAAT---GATTCCC--------AAAAAAAGGAGGTGGGGAGAGGGAAGCATGCAGCTCAAGGTCAGACATCAGACAACTCCCT-GACACAGTGTTAATCAGATTCATGAAGGCTACATGGG-----GGAAAGGCTCATTTGAGAAGCTGACCCTGATTCTAAACA----GACTTGACGATTTACCACCAAATGGGGACAATGCTATTTTGTCAGGGATAAATGTATTCTTCATCATGGGCTGAGAGGTAGAAAACAAGCTGTTTCTTAAAACTGGCTACATTTTCTGCACAGCGC--AGGCTCAGGTATTTGGAAATTAGGATACATAATTGTCTCCTTTAA-AACACAGTAGCCTAGAAACCACAAATCTTAAG-CCCTCTACTTTGCCTCCAGGCAA-CAGAGCTCCAAAACTAATTTGCTGCGTTGTCCAAAGAGAAAGAAGTGCCTCAGTTTCTTCATATTTCAAAAAGGC-AAACACAAC----CATCTCCCTACCAATCAAC-TTT--------------------------------TTTGCAATTTTCACAAAGTACTTTCCTTTTAA-GA-CACTGGGATAGAGGCAG---TTGCTGTGAAAGCCAGAAAACTACAGGCTTGCCTTCTCTGAA---AAAGTGGTT-TTCCTG-----AAATCTTAAGTGCCATAGGCAGTTTTCAGGATTTGTCTACACTCTTAATTTATACTCCTAGAGTTT-TTGTTTA-TTTTTGTTTGTTCTGTATAAATATAAATATTATATCTGTGAGATTTAGCACAGATGGGG----------CCATATTTTAAATACCTAGACAGGCCTTTTGGCTTCTTTTTCTGACAGTTGCAATAATTCTAGTTGAAACTGATAATTCTCAAAAGTATTACATATGAAATTATGTTCTT---CTACACTAAAGAAAGAAGCACTCCTGGACTTACAGACTGAAACACATTGAA-TGGAAACTCACTGTCTTCTAGAACTCTTCCCCATTCCCACCAGTCTCAAGA---ATCTAACCATTCTAACCACTTAAATG---GAATAACAAAGCATGCATTCTAGGAATTTTCAGAACTTTAACTGAAATTATTTAAGATATAAATAGACTCATACACAAAAATCAGCAACATGCTTTC-TGAAGTTCTTTCTCCTACACATTTACCATGAGTGATGGCATC-----CCTAAGTTTGAAATAGGCAGAAGAAATACACAAT--TGTAGTTCAACAGTTGGTTTAATTAGTtgaacaccccatttccttatctacaaaagtgggaatagaatgcatattttatttacttgttggagagtaaaataagata---------------gggaatggacaa--------------cctta--------------------agcacagCAGTTTTA-----------------TTCAGAGATGTAGA---aattatatact------gagcaccta---------------------------ttatgttccagacatggttctat-gtgctggga-----------------------acacagtgg---------------------------------------------------------taactgagaaaggcaaagcctct--------------gttctcatgcagcttacacctaaaca-------------------------aagaaaacatcaagttatc i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16823643 2321 + 184069350 tCTTTCTACTCTGCAGATACTGTTTCCTGAA----------ATTT----------ACCAACAACACTGTCTTGAAGACAT-AAAAAAA-----ATACATCCACAGAATTCAGTTTTACCCCTAAA---AGAGCTGCACTGCACACATTTTTAGAAACATAAATCTCAGCAAAT----ACAGTTGCATTTTATTGACAACATTAAAAATA---ATCACAACAAAGAAATAGT-GAGTCTTTCCTATTCCATTTCAACTTCATTACCATGCTCTACTAGCCTCTATT--------------AAAAAAAAAAAAA------------------------------GTCATTACCTGTATGAAGAGAACCTGTTAATAGTCTGAGAAGGTACTGGGCACATTTCAATATTTCCCGTTTACACCGCTTTCTACAGCCACTCATCTTAAGCAACAAGGTATTCCTCTGAGGAGAGCCAGAAGTCTTTGCCAATAATAATAATAA----------------------AAAAAAGACAGTCTCTGAGGAGAAACTTCTGTCTCAGTTTATG-CA-CAGGCTGCCTTACAACTCCTGTGGAATTAGCTGTTAGCGCCTCAATCAGAAATTCCTTT---AAAATGCTAGAGAAGCCAGATACAGCTACAACAGTAACAGGGAGGTGAGAAAACACGGCTTCTCAGTGTGGTGACCAAGTTCTTCTGTGGCAACAGATAGGCTGCCGGTTCACACTTGTAGTATCCCAGCTCTGGTTCGGCTCGGCATCCCCTCTCCAGAAGCAGTTGCAACCTCACAGACCATTCAGAGGGAGGCGGGGCCTGTGATGCCAGCTCATCAGTGAATCAGCATGTAAGCAGGTGAGAAGACAGATGACAGGTCACTGGGTCTGAAACCCTTCGGATACCAATAAAGGGAATGTGTGAGTGCACTCCAGCCTGC-TGGGGAGGAATCTCAGGG-CCCGAGGCTGTACAAAATGAAT---GATTCCC--------AAAAAAAGGAGGTGGGGAGAGGGAAGTATGCTGCTCAAGGTCAGACATCAGACAACTCCCT-GACACGGTGTTAATCAGATTCAGGAAGGCTACATGGG-----GGAAAGGCTCATGTGAGAAGCTGACCCTGATTCTAAACA----GACTTGACGATTTACCACCACCTGGGGACAATGCTATTTTGTCAGGGATAAATGTATTCT---TCATGGGCTTAGGGGTAGAAAATAAGCTGTTTCTTAAAACTGGCTACATTTTCTGCACAGCGCATGGGCTCAGGTATTTGGAAATTAGGATATATAATTGTCTCCTTTAA-AACACAGTAGCCTAGAAACCACAAATCTTAAG-CCCTCTACATTGCCTCCAGGCAA-CAGAGCTCCAAAACTAATTTGCTGTCTTGTCCTAAGAGAAAGAAATGCCTCAGTTTCTTCATATTTCAACAATGC-AAATACAAC----CATCTCCCTACCAATCAAC-TTTTTAAAAGTTAATAGCCAGAACAATGGCAAGGATTTGCAATTTTCACAAAGTACTTTCCCTTTAA-GA-CACTGGGAAAGAGGCAG---TTGCTGTGGAAGCCAGAAAACTACAGGCTTGCCTTCTCTGAA---AAAGCGGTT-TTCCTG-----AATTCTTAAGTGCCTTAGGCAGTTTTTAGGATTTGTCTACACTCTTAATTTATACTCCAAGAGTTTTTTGTTTA-TTTTTGTTTGTTCTGTATAAACATAAATATTGTATCTGTGAGATTTAGCACAGATGGGG----------CCATATTTTAAAT-CCGAGACAGGTCTTTTGGCTTCTTATTCTGACAGCTGCAATAATTCTACTTGAAACTGATAATTCCCAACAATACTACATAAGAAATGATGTTCTT---CTACACTAAAGAAAGAAGCACTCCTGGACTCACAGACTGAAACACATTGAA-CAGAAACTCATTCTCTTCTAGAACTCTTCCCCATTCCCACCAGTCTCAGGG---GTCTAACCAGGCTAACCATTTAAATG---GAATAACAAAGCATGCTTTCTAGGAATTTTCAGAACTTTAATTGAAAGTATTTAAGATATAAATAGACTCATACACAAAGATCAGCAACATGCTTTT-TGAAGTTCTTTCTCCTATGCATTTATCATGAGTGATGGCATC-----CCTAAGTTTGAAACAGGCAGGAGAAATACACAAT--CGTAGTTCAACAGTTGGTTTAATCAGTtgaacactccattaccttatctccaaaagtgggactagaatgcatattttatttacttgttggagagtaaaataagat----------------gggaatggacaa--------------cgtta--------------------agcacaatacttTTa-----------------ttcatagatctagc---aattatatact------gagaaccta---------------------------ttatgttctagacatggttctat-gtgctggga-----------------------acacagtgg---------------------------------------------------------taactgagaaaggcaaagcctct--------------gttctcatgcagcttacacctcaaca-------------------------aagaaaacatcaagttacc i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20873452 2323 + 189454096 TCTTTCTACTCTGCAGATACTGTTTCCTGAA----------ATTT----------ACCAACAACACTGTCTTGAAGACAT-AAAAAAA-----ATACATCCACAGAATTCAGTTTTACCCCTAAA---AGAGCTGCACTGCACACATTTTTAGAAACATAAATCTCAGCAAAT----ACAGTTGCATTTTATTGACAACATTAAAAATA---ATCACAACAAAGAAATAGT-GAGTCTTTCCTATTCCATTTCAACTTCATTACCATGCTCTACTAGCCTCTATT---------A---AAAAAAAAAAAAAA------------------------------GTCATTACCTGTATGAAGAGAACCTGTTAATAGTCTGAGAAGGTACTGGGCACATTTCAATATTTCCCGTTTACACCGCTTTCTACAGCCACTCATCTTAAGCAACAAGGTATTCCTCTGAGGAGAGCCAGAAGTCTTTGCCAATAATAATAATAA----------------------AAAAAAGACAGTCTCTGAGGAGAAACTTCTGTCTCAGTTTATG-CA-CAGGCTGCCTTACAACTCCTGTGGAATTAGCTGTTAGCGCCTCAATCAGAAATTCCTTT---AAAATGCTAGAGAAGCCAGATACAGCTACAACAGTAACAGGGAGGTGAGAAAACACGGCTTCTCAGTGTGGTGACCAAGTTCTTCTGTGGCAACAGATAGGCTGCCGGTTCACACTTGTAGTATCCCAGCTCTGGTTCCGCTCGGCATCCCCTCTCCAGAAGCAGCTGCAACCTCACAGACCATTCAGAGGGAGGCGGGGCCTGTGATGCCAGCTCATCAGTGAATCAGCATGTAAGCAGGTGAGAAGACAGATGACAGGTCACTGGGTCTGAAACCCTTCGGATACCAATAAAGGGAATGTGTGAGTGCACTCCAGCCTGC-TGGGGAGGAATCTCAGGG-CCCGAGGCTGTACAAAATGAAT---GATTCCC--------AAAAAAAGGAGGTGGGGAGAGGGAAGTATGCTGCTCAAGGTCAGACATCAGACAACTCCCT-GACACGATGTTAATCAGATTCAGGAAGGCTACATGGG-----GGAAAGGCTCATGTGAGAAGCTGACCCTGATTCTAAACA----GACTTGACGATTTACCACCACCTGGGGACAATGCTATTTTGTCAGGGATAAATGTATTCT---TCATGGGCTTAGAGGTAGAAAATAAGCTGTTTCTTAAAACTGGCTACATTTTCTGCACAGCGCATGGGCTCAGGTATTTGGAAATTAGGATATATAATTGTCTCCTTTAA-AACACAGTAGCCTAGAAACCACAAATCTTAAG-CCCTCTACATTGCCTCCAGGCAA-CAGAGCTCCAAAACTAATTTGCTGTCTTGTCCTAAGAGAAAGAAGTGCCTCAGTTTCTTCATATTTCAACAATGC-TAATACAAC----CATCTCCCTACCAATCAAC-TTTTTAAAAGTTAATAGCCAGAACAATGGCAAGGATTTGCAATTTTCACAAAGTACTTTCCCTTTAA-GA-CACTGGGAAAGAGGCAG---TTGCTGTGGAAGCCAGAAAACTACAGGCTTGCCTTCTCTGAA---AAAGCGGTT-TTCCTG-----AATTCTTAAGTGCCTTAGGCAGTTTTTAGGATTTGTCTACACTCTTAATTTATACTCCAAGAGTTTTTTGTTTA-TTTTTGTTTGTTCTGTATAAACATAAACATTGTATCTGTGAGATTTAGCACAGATGGGA----------ACATATTTTAAAT-CCGAGACAGGTCTTTTGGCTTCTTATTCTGACAGCTGCAATAATTCTAGTTGAAACTGATAATTCCCAACAATACTACATAAGAAATGATGTTCTT---CTACACTAAAGAAAGAAGCACTCCTGGACTCACAGACTGAAACACATTGAA-CAGAAACTCATTCTCTTCTAGAACTCTTCCCCATTCCCACCAGTCTCAGGG---GTCTAACCAGGCTAACCATTTAAATG---GAATAACAAAGCATGCTTTCTAGGAATTTTCAGAACTTTAATTGAAAGTATTTAAGATATAAATAGACTCATACACAAAGATCAGCAACATGCTTTT-TGAAGTTCTTTCTCCTACGCATTTATCATGAGTGATGGCATC-----CCTAAGTTTGAAACAGGCAGGAGAAATACACAAT--CGTAGTTCAACAGTTGGTTTAATCAGTtgaacactccattaccttatctccaaaagtgggactagaatgcatattttatttacttgttggagagtaaaataagat----------------gggaatggacaa--------------cgtta--------------------agcacaatacttTTa-----------------ttcatagatctagc---aattatatact------gagaaccta---------------------------ttatgttctagacatggttctat-gtgctggga-----------------------acacagtgg---------------------------------------------------------taactgagaaaggcaaagcctct--------------gttctcatgcagcttacacctcaaca-------------------------aagaaaacatcaagttacc i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16463699 2327 + 178775436 tctttctactCTGCAGATACTGTTTCCTGAA----------ATTT----------ACCAATAACACTGTCTtgaagacataaaaaaaa-----atacatccacAGAATTCAGTTTTACCCCTAAA---AGAGCTGCACTGCACacatttttagaaacataaatcTCAGCAAAT----ACAGTTGCATTTTATtgacaacattaaaaata---atcacaacaaAGAAATAGT-GAGTCTTTCCTATTCCATTTCAACTTCATTACCATGCTCTACTagcctctatt---------a---aaaaaaaaaaaaaa------------------------------gtcattaccTGTATGAAGAGAACCTGTTAATAGTCTGAGAAGGTACTGGGCACATTTCAACATTTCCCGTTTACACCGCTTTCTACAGCCACTCATCTTAAGCAACAAGGTATTCCTCTGAGGAGAGCCAGAAGTCTttgccaataataataataa----------------------aaaaaagacagtctctGAGGAGAAACTTCTGTCTCAGTTTATG-CA-CAGGCTGCCTTACAACTCCTGTGGAATTAGCTGTTAGCGCCTCAATCAGAAATTCCTTT---AAAATGCTAGAGAAGCCAGATACAGCTACAACAGTAACAGGGAGGTGAGAAAACACAGCTTCTCAGTGTGGTGACCAAGTTCTTCTGTGGCAACAGATAGGCTGCCGGTTCACACTTGTAGTATCCCAGCTCTGGTTCGGCTCGGCATCCCCTCTCCAGAAGCAGTTGCAACCTCACAGACCATTCAGAGGGAGGCGGGGCCTGTGATGCCAGCTCATCAGTGAATCAGCATGTAAGCAGGTGAGAAGACAGATGACAGGTCACTGGGTCTGAAACCCTTCGGATACCAATAAAGGGAATGTGtgagtgcactccagcctgc-tggggAGGAATCTCAGGGCCCCGAGGCTGTACAAAATGAAT---GATTccc------aaaaaaaaaggaggtggggagagggaagtATGCTGCTCAAGGTCAGACATCAGACAACTCCCT-GACACGGTGTTAATCAGATGCAGGAAGGCTACATGGG-----GGAAAGGCTCATGTGAGAAGCTGACCCTGATTCTAAACA----GACTTGACGATTTACCACCACCTGGGGACAATGCTATTTTGTCAGGGATAAATGTATTCT---TCATGGGCTTAGAGGTAGAAAATAAGCTGTTTCTTAAAACTGGCTACATTTTCTGCACAGCGCACGGGCTCAGGTATTTGGAAATAAGGATATATAATTGTCTCCTTTAA-AACACAGTAGCCTAGAAACCACAAATCTTAAG-CCCTCTACATTGCCTCCAGGCAA-CAGAGCTCCAAAACTAATTTGCTGTCTTGTCCTAAGAGAAAgaagtgcctcagtttcttcatatttcaACAAGGC-TAATACAAC----CATCTCCCTAccaatcaac-tttttaaaagttaatagcCAGAACAATGGCAAGGATTTGCAATTTTCACAAAGTACTTTCCCTTTAA-GA-CACTGGGAAAGAGGCAG---TTGCTGTGGAAGCCAGAAAACTACAGGCTTGCCTTCTCTGAA---AAAGCGGTT-TTCCTG-----AATTCTTAAGTGCCTTAGGCAGTTTTTAGGATTTGTCTACACTCTTAATTTATACTCcaagagttttttgttta-tttttgtttgttctgtataaacataaatattgtaTCTGTGAGATTTAGCACAGATGGGG----------CCATATTTTAAAT-CCGAGACAGGTCTTTTGGCTTCTTATTCTGACAGCTGCAATAATTCTAGTTGAAACTGATAATTCCCAACAATACTACATAAGAAATGATGTTCTT---CTACACTAAAGAAAGAAGCACTCCTGGACTCACAGACTGAAACACATCGAA-CAGAAACTCATTCTCTTCTAGAACTCTTCCCCATTCCCACCAGTCTCAGGG---GTCTAACCAGGCTAACCATTTAAATG---GAATAACAACACATGCTTTCTAGGAATTTTCAGAACTTTAATTGAAAGTATTTAAGATATAAATAGACTCATACACAAAGATCAGCAACATGCTTTT-TGAAGTTCTTTCTCCTACGCATTTATCATGAGTGATGGCATC-----CCTAAGTTTGAAACAGGTGGGAGAAATACACAAT--CGTAGTTCAACAGTTGGTTTAATCAGTTGAACACTCCATTACCTTATCTCCAAAAGTGGGAAtagaatgcatattttatttacttgttggAGAGTAAAATAAGAT----------------GGGAATGGACAA--------------CGTTA--------------------AGCACAATACTTTTA-----------------TTCATAGATCTAGC---AATTATATACT------GAGAACCTA---------------------------TTATGTTCTAGACATGGTTCTAT-GTGCTGGGA-----------------------ACACAGTGG---------------------------------------------------------TAACTGAGAAAGGCAAAGCCTCT--------------GTTCTCATGCAGCTTACACCTCAACA-------------------------AAGAAAACATCAAGTTACC i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19946786 2355 - 48547382 TCTTTCTACTCTGCAGATACTGTTTCCTGAA----------ATTT----------ACCAACAACACTGCCTTGAAGACAT-AAAAAAA-----ATACATCCACAGAATTCAGTTCTACCCCCAAA---AGAGCTGCACTGCACACATTTTTAGAAACATAAATCTCAGCAAAT----ACAGTTGCATTTTATTGACAACATTAAAAATA---ATCACAACAAAGAAATAGT-GAGTCTTTCCTATTCCATTTCAACTTCATTACCATGCTCCACTAGCCTCTATTTaaaaaaaaa---aaaaaaaaaaaaaa------------------------------GTCATTACCTGTATGAAGAGAACCTGTTAATAGTCTGAGAAGGTACTGGGCAAATTTCAATATTTCCCGTTTACACCGCTTTCTACAGCCACTCATCTTAAGCAACAAGGTATTCCTCTGAGGAGAGCCAGAAGTCTTTGCCAATAATAATAATAT----------------------AAAAAAGACAGTCTCTCAGGAGAAACTTCTGTCTCAGTTTATG-CA-CAGGCTGCCTTACAACTCCTGTGGAATTAGCTGTTAGCGCCTCAATCAGAAATTCCTTT---AAAATGCTAGAGAAGCCAGATACAGCTACAACAGTAACAGGGAGGTGAGAAAACACGGCTTCTCAGTGTGGTGACCAAGTTCTTCTGTGGCAACAGATAGGCTGCCGGTTCACACTTGTAGTATCCCAGCTCTGGTTCGGCTCGGCATCCCCTCTCCAGAAGCAGTTGCAACCTCACAGACCATTCAGAGGGAGGCGGGGCCTGTGATGCCAGCTCATCAGTGAATCAGCATGTAAGCAGGTGAGAAGACAGATGACAGGTCACTGGGTCTGAAACCCTTCGGATACCAATAAAGGGAACTTGCGAGTGCACTCCAGCCTGC-TGGGAAGGAACCTCAGGG-CCCGAGGCTGTACAAAATGAAT---GATTCCC--------AAAAAAAGGAGGTGGGGAGAGGGAAGTATGCTGCTCAAGGTCAGACATCAGACAACTCCCT-GACACGGTGTTAATCAGATTCAGGAAGGCTACACGGG-----GGAAAGGCTCATGTGAGAAGCTGACCCTGATTCTAAACA----GACTTGACGATTTACCACCACCTGGGGACAACACTATTTTGTCAGGGATAAATGTATTCT---TCATGGGCTTAGAGGTAGAAAATAAGCTGTTTCTTAAAACTGGCTACATTTTCTGTACAGCGCACGGGCTCAGGTATCTGGAAATGAGGATACATAATTGTCTCCTTTAA-AACACAGTAGCCTAGAAACCACAAATCTTAAG-CCCTCTACATTGCCTCCAGGCAA-CAGAGCTCCAAAACTAATTTGCTGTCTTGTCCTAAGAGAAAGAAGTGCCTCAGTTTCTTCATATTTCAACAAGGC-TAATACAAC----CATCTCCCTACCAATCAAC-TTTTTAAAAGTTAATAGCCAGAACAATGGCAAGGATTTGCAATTTTCACAAAGTACTTTCCCTTTAA-GA-CACTGGGATAGAGGCAG---TTGCTGTGGAAGCCAGAAAACTACAGGCTTGCCTTCTCTGAA---AAAGCGGTT-TTCCTG-----AATTCTTAAGTGCCTTAGGCAGTTTTTAGGATTTGTTTACACTCTTAATTTATACTCCTAGAGTTTTTTGTTTA-TTTTTGTTTGTTCTGTATAAACATAAATATTGTATCTGTGAGATTTAGCACAGATGGGG----------CCATATTTTAAAT-CTGAGACAGGTCTTTTGGCTTCTTATTCTGACAGCTGCAATAATTCTAGTTGAAACTGATAATTCCCAACAAAACTACACAGGAAATGATGTTCTT---CTACACTAAAGAAAGAAGCACTCCTGGACTCACAGACTGAAACACATTGAA-TGGAAACTCATTCTCTTCTAGAACTCTTCCCCATTCCCGCCAGTCTCAGGGTTAGTCTAACCAGGCTAACCATTTAAATG---GAATAACAAAGCATGCTTTCTAGGAATTTTCAGAACTTTAATTGAAAGTATTTAAGATATAAATAGACTCATACACAAAGATCAGCAACCTGCTTTT-TGAAGTTCTTTCTCCTACACGTTTATCATGAGTGATGGCATC-----CCTAAGTTTGAAACAGGCAGGAGAAATACACAAT--CGTAGTTCAACAGTTGGTTTAATCAGTTGAACACTCCATTACCTTATCTCCAAAAGTGGGAATAGAATGCATATTTTATTTACTTGTTGGAGAGTAAAATAAGAT----------------GGGAAGGGACAA--------------CCTTAAGCACAACACTTTTATTCATAGCACAACACTTTTa-----------------ttcatagatctagc---aattatatact------gagaaccta---------------------------ttatgttctagacatggttctat-gtgctggga-----------------------acacagtgg---------------------------------------------------------taactgagaaaggcaaagcctct--------------gttctcatgcagcttacacctcaaca-------------------------aagaaaacgtcaagttacc i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21306835 2308 - 190850796 TCTTTCTACTCTGCAGATACTGTTTCCTGAA----------ATTT----------ACCAGCAACACTGCCTTGAAGACAT-AAAAAAAAAAAAATACATCCACAGAATTCAGTTCTACCCCCAAA---AGAGCTGCACTGCACACATTTTTAGAAACATAAATCTCAGCAAATATTCACAATTACATTTTATTGACAACATTAAAAATA---ATCACAGCAAAGAAACAGT-GAGCCTTTCCTATTCCATGTCAACTTCATTACCACGCTCTACTAGCCTCTATT---------A---AAAAAAAAAAAAAA------------------------------GTCATTACCTGTATGAAGAGAACCTGTTAATAGTCTGAGAAGGTACTGGGCAAATTTCAATATTTCACGTTTACACCGCTTTCTACAGCCACTCATCTTAAGCAACAAGGTATTCCTCTGAGGAGAGCCAGAAGTCTTTGCCaataataataataa------------------taataaAAAAGACAGTCTCTGAGGAGAAACTTCTGTCTCAGTTCATG-CA-CAGGCTGCCTTACAACTCCTGTGGAATTAGCTGTTAGTGCCTCAATCAGAAATTCCTTT---AAAATGCTAGAGAAGCCAGATACAGCTACAACAGTAACTGGGAGGTGAGAAAACACGGCTACTCAGTGTGGTGGCCAAGTTCTTCTGTGGCAACAGATAGGCTGCCGGTTTACACTTGTAGTAACCCAGCTCTGGTTCGGCTCGGCATCCCCTCTCCAGAAGCAGTTGCAATCTCACAGACCATTCAGAGGGAGGCGGGGCCTGCAATGCCAGCTCATCAGTGAATCAGCATGTAAGCAGGTGAGAAGACAGATGACAGGTCACTGGGTCTGGAACCCTTTGGATACCAATAAAGGGAACCTGTGAGTGCAATCCAGCCTGC-TGGGGAGGAATCTCAGGG-CCTGAGGCTGTATAA----AAT---GATTCCC--------AGAAAGAAGAGGTGGGGAGAGGGAAGCATGCTGCTCAAGGTCAGACATCAGACAACTCCCT-GACACAGTGTTAATCAGATTCAGGAAGCCTAAATGGGGGAAAGGAAAGGCTCATTTGAGAAGTTGACCCGGATTCTAAACA----GAGTTGAAGATTCACCACCAAATGGGGACAATGCTATTTTGTCACAGACAAACATATTCTTCTTCATGGGCTTAGAAGTAGAAAACAAGCTGTTTCTTACCACTGGCTACATTTTCTGCACAGGGC--GGGCTCAGGTATTTGGAAATTAGGATAGGTAATTGTCTCCTTTAA-AACACAGTAGCCTAGAAACCACAAATCTTAAG-CCCTTTGCCTTGCCTCCAGGCAA-CAGAGCTCCAAAACTAATTTGCTGCACTGTCCTAAGAGAAAGATGTGCCTCAGTTTCTTCATATTTCAAAAA-GC-AAACACAAC----CATCTCCTTAGCAATTGACGTTTTTTAAAGTTAGTAGTGAGAACAATGTCAAGGATTTGCAATTTTCACAAAGGACCTTTCTTTTAA-GA-CATTAAGATAGAGGTAG---TTGCTGTGGAAGCCAGAAAACTATAGGGTTGCCTTTTCTGAA---AAAGTGATT-TTCCTG-----AATTCTTGAGTGTCTTATGCAGTTTTTAGGATTTTTCTACACTCTTAATTTATACTCCTAGAGTTT-CTGCTTATTTTTTGTTTGTTCTGTAAAA------------TATTTGTGAGATTTAGCACAGATGGGG----------CCATATTTTAAATACCTAGACAAACCTTTTGGCTCCTTTTTCTGACTGTTGCAACAATTCTAGTTAAAACCGATATTTCCCAACAATACTACATATGAAATGATGTTCTT---CTACACTTAAGAAAGAAGCCCTCCTGGAATGATAGACTGAATCACATTAAA-TGGAAACTCATTCTCTTCTTGAACTGTTACCCATTTCCACCAGTCTCAGTG---GTCTAACCATTCTAACTATTTAAATT---GAATAACAAAGCATGATTTCTAGGAATTTTCAGAACTTTAATCGAATGGATTTAAGATATAAACAGACCTATACACAGTGATCAGCAATATCCTTTTATGAAGTTCTTGCTCCTACACATTTTCCATGAGTGATGGCATC-----CCTAAGTTTGAAATAGGCAGAAGAAATACACA-----GTATTTC------------------TTGAACACCCCATTTCCTTATCTACAAAAGTGGGAATAGAATGTACATATTACTTCCTTCTTGAAGGGTAAGATGAGACA---------------GGGTATGGGCAA--------------CCTTA--------------------CACACAGCACTTTGa-----------------ttcatagatctagc---agttatgtgcc------aagcaccta---------------------------ttatgttccagacagggttctac-gtgctggga-----------------------acacaatag---------------------------------------------------------taactgagaaaggtaaagcctct--------------gttctcatgcagcttacacctcaaca-------------------------aagaaaacatcaaattacc i calJac3.chr3 C 0 C 0 s mm10.chr5 49284969 2140 + 151834684 TCTTTTTAATC-ACAGACACAG-TTCCTTAG----------ATTCAGGCACAGCAAACAGTGGCGCTGCCTGGAGGACAT---AAAAG-----ATACACTCAGACAATCCAGTTCTACCCCCCAGATCAGAGCTACCCAGCACATGTCTTTAGGAGAAGGAATGTCAGCAAGC----GAGACTGCATTTTATTAGCAGCATTAGAAAAAAATATCACAACAAAGAAATAGT-GAGCGTTTTCTACTCTGATTCAACTCCGTTACCATGCTCTGCCAGCCTTGATT---------T---AAAAAAAAAAAAAA------------------------------GTCATTACCTGTATGAAGAGAACCTGTTAATAGCCTGAGAAGGTACTGGGCAAATTTCAATATTTCACGTTTACACCGTTTCCTACAGCCACTCATCTTAAGCAACAAGGTATTCCTCTGAGGAGAGTCAGAAGTCTTTGCCAATAGAAAGAGGAGGAAAAAAAAAAAGGAAACAAAAAAAAGAGGCAGCTTCTGGGGGGAAACTTCTGTCTCAGTTTATG-GAGCAGGCTGCCTTACAACTCGTGGGGAATTAGCTCTGAGTGCCTGAGTCAGAA----------------GGTACAGCAGCCAG-TGCAGATGCAAGAGTAACAGGGCACTGAGAAAGCGCTGCCTCCCAGGACGGTCATCAAGTTCTTCTGTGGCAACAGATAAGCTGCTGCTTCACACTTGTAGTAACCCTGCTATGGTGCATCTCGGCATCCTCTCTCCTGAAGCAATTGCAACCTCACGGACCATGCCGAGGGAGGCGGGGCTTGCGATGCCAGCTCATCAATGAATCAGCATGTAAGCAGGTGAGCAGACAGATGACAGGTCACTGGGGCTAAAGCCCTTCGGAAACCAATAAA-AGATCCTGCTAA-ACAATCAGGCCTGC-TGGGGAGAAATCTCGGGG-TCCAAGGGTGTACAAAATGTGTCTAGATAATC--------AAGGAGAGA----TTGGAAAGGGA------CTGCCTGAAGTCAGAACTCAGACTGTTCCTA-TACACAGTGATGATCATATTCAGAGA----------------GCAGAGAC-------AGAAGCTGACTCTCAT------CA----GAGTTGAGGATTTACCAGAAGAATAAAGCAATACTGCTGTGCCACAGAACGATATATTCAAACCCATTGGCTCCCTGGTAGAAAGCAAGCTGATACTCCAAACTGGCTACTGTTTCT-----------GGGCTCAGATATTTGGAAGCCAG---ACGTCATTATCTGCTTTCATAAAACACTAACTTGGAAGCCAAAGTTGTGGAG-TTCTATACTGTGCACCCAGGCAA-AAGAGTCCCAAAGCTAACTTGCTGCATTATGCTAAAAGCAGGAACTGCCTCAGTTTCTTCTTCTTCTTAAAAGGC-AAATACAACTTGTTATTTCCCTACAGACTGAT-TT-----AAGTTAG----GAGAGCAATCTGCAGGGCTTGCGATGTGCACAAAGCACTTTTGTACTGA-GAGTGGCGCTACACAGGCAGT--TTGTAATAAATGCCTGAAAACCAGATGCTTA-CATCTTTGAA---AGTGTCATTATTTCAT-----AAGTCTTTGGGGCTTTGGGTAGTTTCTCGGGTTGCTTTACATTCTTAATTAATACTCCCGGGCTTT-TTATTGC-TTTTTACTGACTCTGTATAAATATAAATTTTGTCACTGTGATATTTAGTACAAAAAGGAAATTCAAATTCCTTATTTTAAAA----------GTCTGTCAGCCCCCATTTTTGAAACATGTAACAGTTCTATTTGGAACTAGTATTTTTCAATAATGCTATGCATGAAGTGATGTTCTTATACAACAACAACAAAAAAAAAATGTTTGAAATCTCAGGCTTAAAATCATTTAAGTGGAAACTCA-TATACTCTACAACT--------TCCCCTTCAATATCCACA---GTCTTAGTGATGTACCCACTGAAGTGTGTTAATGAAGAAGCATACTTCTGAGGaatattt----ttttaa---aattcagttaaaataaaactata---------------------------ttt-taa----CATTTTCTTACAAATAT----------ATGGCATCAACTGACAATGTTTGGCACAGGAAAGATAAATATAT------------------------------------TACTACAT--------------------------AATATATACTATA------------------------------------------------------------------------TA--------------------TCTATAGTATTT---------------------------ATCTAAT---GGGTTTATTCT------GAGCAGCT---------------------------------TAACAGACATAGTTCCAT-ACAGTGGGT-----------------------ACACTGTAG---------------------------------------------------------TGA-----AAAGGTAATAACTTT--------------GATCCTATGGTATGTATACCTCAGCATAACCAGGAAGTTAT----------AGGAAGATACCAA-----C i mm10.chr5 I 18 C 0 s canFam3.chr3 3875108 2537 - 91889043 TCTTTCTACTCTGCAGACACTGCTTCCTTAGATTGAGGCACATTT----------AACAACAACACTGCC--AAAAAGAC-AGGAAAG-----ATACATCCACAGAATTCAGTTCTACCCCCAAA-TTAGAGCTGCACTGCACACATTTTTAGAAACGTGACTCTTAGCAAAC----ACAATTGTATTTTATTGACAACATTAAAAATA---AACACAACACAGAAATAGTGGAGCCTTTCCTACTCCGTTTCCACTTCATTACCATGCTCCACCAACCTCtatt---------atttaaaaaaaaaaaaaa------------------------------GTCATTACCTGTATGAAGAGAACCTGTTAATAGTCTGAGAAGGTACTGGGCAAATTTCAGTATTTCACGTTTACACCGCTTTCTACAGCCACTCATCTTAAGCAACAAGGTATTCCTCTGATGAGAGCCAGAAGTCTTTGCCAAAAAAAA----------------------------AAAAAAGACAGTCTCTGAGGGGAAACTTCTGTC-CAGTTTATGTCA-CAGGCTGCCTTACAACTCCTGTGGAATTAGCTCTTAGTGCCTGAATCAGAAATTCCTTTTAAAAAAAGCTAGAGAAGCCGGATACGGATAGAACAGTAACAGGATGGTGAAAAGGGGTTGCTTCTCAGTATGGTCACCAAGTTCTTCTGTGGCAACAGATAGGCTGC-GGTTCCCACTTGTAGTAACCCA-CTGTGGTTCAGCTCAGCATCCCCTCTCCAGGAGCAGTTGCAACCTCACGGACCATTCACAGGGAGGCGGGGACTGTGATGCTAGCTCATCAATGAATCAGCATGTAAGCAGGTGAGGGGACAGATGACAGGTCACTGGGGCTGAAACCCTTTGGGTACCAATAAAAAGAGCCAGCTAATGCAATTGAGCCTGAGGGGGGAGCGATCTCAC---TCTACAGCTCTACAAA---AAT---GATCCCCCCCCCCCCAAGAAAGGGAAGT------AGAATAGCATGCTGTTCAAGGTCAGACATCAGACAATTCTCT-GATACAGTGTTAATCAGATTCAGGAAGCCTAAACAGC-----AAAAAGGCACATTTGAGGAGCTGACCCTGATTCTAAACAAATGGAGTTGAAGATTTACCACCAAATGTAGGCAATGCTGTT-TGTCACAGATAAATATATTCC-AGTTATGGCCACAGAGGTGGAAAAGAAGCTGTTACCTAAATTTGGCTGTGTTTTCAGTACTGTCC--AGGCTCAAGTATTTGGAAA--ATTTTTTTAAAGTGTCTTATTCAA-AATACAGTAGCCTGGAAACCATAGCTCTGAAGCCCCTGTGCTTTGTCTCCAGACAATTCGAGCCCCAAAACTCATTTACTGCATTCACCTAAGAGAAAGAACTGACTCAGTTTCCCCATATTTCCAAAAGGCAAAATACAACTTGCTAGCTCCTTGCCAATTGAC-TTATTTTGAATTAATGGTGAGAATGAGAGTGAGAGTGTGCAGTTTTCACAATGTACTCTTCTGTTAAGGA-CAGTGTTACAGAGGGAGGAAGTGAAATGAAAGCCAGAAAATTACAGGCTGGCCATCTTTGAAGGTACAGAAGTT-TTGTTGTTTTTTCTTCTTGAGCACCTTGGGCAATTCCTAGGATTTGTCCAGGTTC-TAATTTACCTTCCCAGGGTAGTTTATTTC-TTTCTGCTTATTTTGTATAAATAT-AATATTATCTCCATGAGATTTAGTATATATAGAATGTGCATCCTCTATA-TTTAAGTACCTAGACAAATCTCCCCCCCACCCTTTTTTTC---CTCAACAAACCTAGTTGGAACTAATGTTTTCCAACAATATTATGCATGAAATGATGTTCTT---TTACAATAAAGAAAGAGGCACTCCAAAAC-CTTAAACATAAACAGATTGAG-GGGGAACTCACTCT-TTCTAGAATGCTCCCACTTTCCCA---------------GACACAGCAGTGTAACCATTTGAATA---GGGTAATAAAACATGCTTTCCAGGAATTTTCAGAACATCAATTTAGAGTGTTTGAAATAAAAACAATTTCAGACACAAAGTTTAGCAACATACGTTT-TGAAGGTCTTGTTCATATACATTTG-CATGAGTAATGGCATC--------AAGTTTGAAATAGGCAGAAGAAATA-ATAATACTGTCATTCCATAGTTGAGCTAATTATTCTAAAGTCTCATTCTCTTATTTATAAAATGGAGATC----TAGATACTTTATTTGTTTGTTGAAGAGTAAAATAAGATATGCTGGAGATAGAGCGGTAATGGAGAAAGACAAAACTCTGGCACTA--------------------AGAACCACATATGGAACATAACAAGTGCTCAGTTTACAATTTCTACACAAATTATGTAATATTAAggggcacctggatggctcactcagttaagtgtctgccttcagttcaggtcatgatcccagagtcctgggactgagccccaagtcaggctccctgctcaatggagaacctgcttctccttcccacttgtggtttctttctctcttgctatctctccctctcaaataaataaattaaatcttttaaaaaaTTTTTGTAGTATtcatggagcttacacttcagtataaaatacaaattagtaaaaaatgaaagaaaacataagaaaact i canFam3.chr3 C 0 I 121 a score=1821435.000000 s hg38.chr4_KI270790v1_alt 185241 547 + 220246 aaataataaataagaacatatcccatatgagtaagtgctgttgaaccaggagagaacattaaaacca-gctggcagaatagaaagtgagtaggttgagaggtcaggaaagaggtctctaagaaaagaagttaagtaggagtttaaattacaagaaggaact------------gaccgtgagatgtttagggtaaagggcaccttgggtggaggaaacagcttatgcaaatacgccaagctgcgaatgagcttggcatccttaaggaacagagagaagggtgtggctgctgaaacatgctgagccaggagagacttctgggagacattttcatg-gataaagtccggggcta-------cag--------tatgtgaagccttatagctggggtaagggatttagatttcagtctctttgcc--agaaagccactctagggaataggggac-ttgtgtgatctgcctgctatgaaaaggatgaactgccagggagcaagagtggaagaaggaacac---atgtgagggggcatcacagtggcccaggtgagaaacaatggtg----gcatggcctggagtggaaat s panTro4.chr4 21574188 546 + 193495092 aaataataaataagaacatatcccatatgagtaagtgctgttgaaccaggagagaacattaaaacca-gctggcagaatagaaagtgagtaggttgagaggtcaggaaagaggtctctaagaaaagaagttaagcaggagtttaaattacaagaaggaact------------gaccctgagatgtttagggtaaagggcaccttgggtggaggaaacagcttatgcaaatacgccaagctgggaatgagcttggcatccttaaggaacagagagaagggtgtggctgctgaaacatgctgagccaggagagacttctgggagacattttcatg-gataaagtccggcgcta-------cag--------tatgtgaagccttatagctggggtaagggatttagatttcagtctgtttgcc--agaaagccac-ctagggaataggggac-ttgtgtgatctgcctgctatgaaaaggatgaactgccagggagcaagagtggaagaaggaacac---atgtgagggggcatcacagtggtccaggtgagaaacaatggtg----gcatggcctggagtggaaat i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21749751 547 + 198332218 aaataataaataagaacatatcccatatgagtaagtgctgttgaaccaggagagaacattaaaacca-gctggcagaatagaaagtgagtaggttgagaggtcaggaaagagatctctaagaaaagaagttaagcaggagtttaaattacaagaaggaact------------gaccgtgagatgtttagggtaaagggcaccttgggtggaggaaacagcttgtgcaaatacccaaagctgggaatgagcttagcatccttaaggaacagaaagaagggtgtggctgctgaaacatgctgagccaggagagacttctgggagacattttcatg-gataaagtcaggggctg-------cag--------tatgtgaagccttatagctggggtaagggatttagatttccatctctttgcc--agaaagccactctagggaatagcagac-ttgtgtgatctgcctgctatgtaaaggatgaactgctagggagcaagagtggaagaaggaacac---atgtgagggggcatcacagcagtccaggtgagaaacaatggtg----gcatggcctggagtggaaat i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20359036 547 - 85365473 aaataataaataagaacatatcccatgtaagtaagtgctgttgaaccaggagagaacattaaaacca-gctggcagaatagaaagtgagtaggttgagaggtcaggaaagagatctctaagaaaagaagttaagcaggagtttaaattacaagaaggaact------------gaccgtgagatgtttagggtaaaggggaccttgagtggaggaaacagcttgtgcaaataccccaagctgggaatgagcctggcatccttaagcaacagaaagaagggtgtggctgctgaaacatgctgagccaggagagacttccgggagacattctcatg-gataaagtcaggggcta-------cag--------tatgtgaagccttatagctggggtaagggatttagatttcagtctctttgcc--agaaagccactctagggaatacgggac-ttgtgtgatctgcctgctatgtaaaggatgaactgctagggagcaagagtggaagaaggaacac---acgtgagggggcatcacagcagtccaggtgaggaacaatggtg----gcatgggcaggagtggaaat i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16825964 549 + 184069350 aaat----aataagaacatatcccacatgagtcagtgttgttgaaccaggagaaaacattaaaacca-gctggcagaatagaaagagagtaggttgagaggtcaggaaagagatctctaagaaaagaagttaagcaggagtttacattacaagaaggaact------------gaccgtgagatgtttagggtaaagggcaccttgggtggaggaaacagcttgtgcaaataccccaagctgggaatgagcttggcatccttaaggaacagaaagaagggtgtggctgctgaaacatgctgagccagaggagacttcagggagacattttcatg-gatgaagtcgggagctacagtaggcag--------tatgtgaagccttatagctggggtaagcgattcagatttcaggctttttgcc--agaaagccactctagggaatatgggac-ttgtgtgatctgcctgctatgtaaaggatgaactgctagggagcaagggaggaa-aaggaacac---atgagagggggcgtcacagcggtccaggtgagaaacaatggtg----gcatagcctggagtggaaat i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20875775 549 + 189454096 aaat----aataagaacatatcccacatgagtcagtgttgttgaaccaggagaaaacattaaaacca-gctggcagaatagaaagagagtaggttgagaggtcaggaaagagatctctaagaaaagaagttaagcaggagtttacattacacgaaggaact------------gaccgtgagatgtttagggtaaagggcaccttgggtggaggaaacagcttgtgcaaataccccaagctgggaatgagcttggcatccttaaggaacagaaagaagggtgtggctgctgaaacatgctgagccaggggagacttcggggagacattttcatg-gatgaagtcgggagctacagtaggcag--------tatgtgaagccttatagctggggtaagcgattcagatttcaggctttttgcc--agaaagccactctagggaatatgggac-ttgtgtgatctgcctgctatgtaaaggatgaactgctagggagcaagggaggaa-aaggaacac---atgagagggggcgtcacagcggtccaggtgagaaacaatggtg----gcatagcctggagtggaaat i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16466026 549 + 178775436 AAAT----AATAAGAACATATCCCACATGAGTTAGTGTTGTTGAACCAGGAGAAAACATTAAAACCA-GCTGGCAGAATAGAAAGTGAGTAGGTTGAGAGGTCAGGAAAGAGATCTCTAAGAAAAGAAGTTAAGCAGGAGTTTACATTACAAGAAGGAACT------------GACCGTGAGATGTTTAGGGTAAAGGGCACCTTGGGTGGAGGAAACAGCTTGTGCAAATACCCCAAGCTGGGAATGAGCTTGGCATCcttaaggaacagaaagaagggtGTGGCTGCTGCAACATGCTGAGCCAGGAGAGACTTCGGGGAGACATTTTCATG-GATGAAGTCGGGAGCTACAGTAGGCAG--------TATGTGAAGCCTTATAGCTGGGGTAAGGGATTCAGATTTCAGGCTTTTTGCC--AGAAAGCCACTCTAGGGAATATGGGAC-TTGTGTGATCTTCCTGCTATGTAAAGGATGAACTGCTAGGGAGCAAGGGAGTAA-AAGGAACAC---ATGAGAGGGGGCGTCACAGCGGTCCAGGTGAGAAACAATGGTG----GCATAGCCTGGAGTGGAAAT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19949141 538 - 48547382 aaat----aataagaacatatcccacatgagtaagtgttgttgaaccaggagaaaacattaaaacca-gctggcagaatagaaagtgagtaggttgagaggtcaggaaagagatctctaagaaaagaagttaagcaggagtttacattacaagaaggaact------------gacc-----------agggtaaagggcacctcgagtggaggaaacagcttgtgcaaataccccaagctgggaatgaacgtggcatcattaaggaacagaaagaagggtgtggctgctgaaacatgccgagccaggagagacttcggggagacattttcatg-gataaagtcgggggctaccgtaggcag--------tatgtgaagccttatagctggggtaagggatttagatttcagtctctttgcc--agaaagccactctagggaatatgggac-ttgtgtgatctgcctgctatgtaaaggatgaactgctagggagcaagagaggaa-aaggaacac---atgagaggggccgtcacagcggtccaggtgagaaacaatggtg----gcatggcctggagtggaaat i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21309143 533 - 190850796 aagtaaaaaataagaacatatcccatatgagtaagtgctgttgaaccaggagagaacattaaaaccaggctgctagaacaggaagtga-taggttgataggtcaggaaagagatctctaagaaaagaagttaaggtcgagtttgaattacaagaaggaact------------gaccgtgagatgtttagggaaaagggcatcttggctggaggaaacagcttgtgcaaataccccaagcttgtaatgagcttggcatcctcaaggaatagaaagaagggtgtggctgctgaaacatactgagccaggagagacttctgggaggcattttcatg-gataaagtcaggggcta-------cag--------tatgtgaa--------------gtaagggatttagatttcagtgtatttgcc--aggaagccactctagggaataggagactttgtgtgatctgtctgctatgtaaaggatgaattgctagggagcaagagtagaagaagaaacac---atgtgaggga-catcacagtggtccatgtgtgaaacaatggtg----gtatggcctggagtggaaat i calJac3.chr3 C 0 C 0 s mm10.chr5 49287109 441 + 151834684 CAATAATAAACAAGAATATATCGCATATGGGTAAGTGCT----------------CCATTAGAGTAA------CCGTATaggaaaggcataagtaaaaagg----------------------gagaagcta-----gtgcataaaacaggggagggaacc-------------accatgaactact-------gagagcatctgagaaataaagaacacttggcgcaaggatgctaaggtgggaatatgatcagcatacttaaatgaatgcaagacccacatgtttgctgaagtacactgactcaggagagactcctaggagg--tgttcatgagaggAAGACAGTGGCAA-------CAG--------TGCTTTAAGC------------------------------------------------AACCCCT-----GAACAGGAAAG-CTGTGCCTTCTGTCTGCTAGGTAAA-GATGACCTTCAATGGAACTAGAAGAGAAGAAGGAATATCTAAAAAAAGGGGG----AAAGTAGTTCAGGAGAGAAATGATGGAGGTATGTATGACCTGCAGTAGGGAT i mm10.chr5 C 0 C 0 s canFam3.chr3 3877766 534 - 91889043 aagaaaaaaaaaagaaaatatcacctgcaggtaagagctac---------ggagactatgaaactag-gttgatagaatagaacatgagt---------ggtcagggaagacatctctaagaaaagatggttaactgggatattaattataagaaggagccatataaatgatcaaccatgaaaagcttaggggaaggaaaatgtcaagcggagtataaagttcgtacaaagaccccaagctaggaaagattttgacatcgtaaaggaacagaaagaagggtgtggctgctgaagtgcactgagccaggagagtcttacaggaaatgatttcatg-aagacaggcagga-cta--ctagacagagcctacaagtgtagggccatgtagccagactaaggagtttggagct-attctgtataccctggaaagtcattcctgggaatagggaaa-ctgtgtgatccatctgttatacaaaagatggattgtagggtaataagagtagaagaaggaacac---ctacgaggAA-CATCACA-------------------ATGCTG----GCATGGCCTGGAGTAGAAAT i canFam3.chr3 I 121 I 1758 a score=724035.000000 s hg38.chr4_KI270790v1_alt 185788 220 + 220246 acaggtagtcagtttctggatataattgaaaacagaatcagtacaatttggtacactgaatagggacatgagggaaagaaaagaattaagaatgaattagtttgggacatgaataactgaatgggtaaatttAATGAGTTGATGACATAGAAATACTAtgggat------------tgctggatcgtatgataat--tgag--ttttttgagatactccatac--tgtattctaaaat s panTro4.chr4 21574734 220 + 193495092 acaggtagtcagtttctggatataattgaaaacagaatcagtacaatttggtacactgaatagggacatgagggaaagaaaagaattaagaatgaattagtttgggacatgaataaccgaatgggtaaatttAATGAGTTGATGACACAGAAATGCTAtgggat------------tgctggatcgtatgataat--tgag--ttttttgagatactccatac--tgtattctaaaat i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21750298 222 + 198332218 acaggtagtcagtttccggatgtaattgaaaacagaatcagtacaatttggtacactgaacagggacatgagggaaagaaaagaattaagaatgaattagtttgggacatgaataaccgaatgggtaaatttAATGAGTTGATGACATAGAAATGCTAtgggat------------tgctggattgtatgataattctgag--ttttttgagatcctccatac--tgtattctaaaat i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20359583 222 - 85365473 ataggtagtcagtttctggatataattgaaaacagaatcagtacagtttggtacactgaatagggacatgagggaaagaaaagaattaagaatgaattagtttgggacatgaataactgaatgggtaaatttAATGAGTTGATGACACAGACATGCTAtgggat------------tgctggatcatatgataattctgag--ttttttgagatcctccatac--tgtattctaaaat i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16826513 222 + 184069350 ataggtagtcagtttctggatataattgaaaacagaatcagtatagtttggtacactgaatagggacatgagggaaagaaaa-aataaaggatgaattagtttgggacatgaataactgaatgggtaaatttAATGAGTTGATGACATAGAAATGCTAtgggat------------tgctggatcgtatggtaattctgag-tttttttgagatcctccatac--tgtattctaaaat i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20876324 223 + 189454096 ataggtagtcagtttctggatataattgaaaacagaatcagtatagtttggtacactgaatagggacatgagggaaagaaaa-aattaaggatgaattagtttgggacatgaataactgaatgggtaaatttAATGAGTTGATGACATAGAAATGCTAtgggat------------tgctggatcgtatggtaattctgagttttttttgagatcctccatac--tgtattctaaaat i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16466575 221 + 178775436 ACAGGTAGTCAGTTTCTGGATATAATTGAAAACAGAATCAGTATAGTTTGGTACACTGAATAGGGAcatgagggaaagaaaa-aattaaggatGAATTAGTTTGGGACATGAATAACTGAATGGGTAAATTTAATGAGTTGATGACATAGAAATGctatgggat------------tgctggatcgtatggtaattCTGAG--TTTTTTGAGATCCTCCATAC--TGTATTCTAAAAT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19949679 221 - 48547382 acaggtagtcagtttctggatataattgaaaacagaatcagtatagtttggtacactgaatagggacatgagggaaagaaaa-aattaaggatgaattagtttgggacatgaataactgaatgggtaaatttAATGTGTTGATGACATAGAAATGCTAtgggat------------agctggatcgtatggtaattctgag--ttttttgagatcctccatgc--tgtattctaaaat i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21309676 220 - 190850796 acagctagtcagtttctggatataattgaaaacagaatcagtacactttggtatattgaatagggacatgagggaaagcaaagaattaaggatgagttagtttgggacatgaataactgaatgggtaaatttAATGAGTTGATGAC--AGAAATGCTAtgggat------------tgctggattatatgataattctgag--ttttttgagatcgtccacac--tgttttctaaaat i calJac3.chr3 C 0 C 0 s mm10.chr5 49287550 223 + 151834684 AAAGGTGGTCTCTTTCTGGATATACAAGGAAACAGAATTCATGGGGTTTGGTACATTGACTAAGGACATAAAAGAA---AAAGGATTAAGAGTTACCTAA-TTGGGATTTAAATAATT-AGTGGGCACACTCAATTAGCTGTT------GAAATGCTATTGTATACAATTAAAATGCACATGGTTGTTTGAT--TTTCAGG--TTTTTAGAAACTCCCCAGGCTTTTTATTCTAAAAT i mm10.chr5 C 0 I 3264 e canFam3.chr3 3878300 1758 - 91889043 I a score=1943303.000000 s hg38.chr4_KI270790v1_alt 186008 668 + 220246 agctgtactattataatttacattcccaacaacagtatatgcaggttcccttttctctgcacccttaggatacttgttatcttttgtcttttggctaatagccattctaacagatatgcagtgat--agatcattgtgattttaatttgcatttacctgatgatcagggatgttgaatgttttttcaggaacttgcgggtcatttgtatgtcttcttttgataaacgcctgttcaggtcctttgcccactttttaaaatgcattatttgttttcttgctattgagctatttgagtttcttacatattttggatattaccccttatcagatgtatggtttgcaaatattttctcccaattgtgggttatcttttcactgtgtttttgttgtttttt-tttgtttgttttt-------------tgctgtgcagaagctttttagtttgctgcaatttcatttctctatttttg-ttttattgtctgtgcttttggggtcctatatgataaatcattgtccataccaatgtcctgaagcttttctcctatatttcagtagtat--cacagttccaggttttacatttaagtatttaatctattttgagttaatatttttgtatatgatgtgagataaaggtccagtttcattcttctacatatggttatccagtttt--cccaacactttt s panTro4.chr4 21574954 669 + 193495092 agctgtactattataatttacattcccaacaacagtatacgcaggttcccttttctctgcacccttaggatacttgttatcttttgtcttttggctaatagccattctaacagatatgcagtgat--agatcattgtgattttaatttgcatttacctgatgattagggatgttgaatgttttttcaggaacttgtgggtcatttgtatgtcttcttttgagaaacacctgttcaggtcctttgcacactttttaaaacgcatgatttgttttcttgctattgagctatttgagtttcttacatattttggatattaccccttatcagatgtatggtttgcaaatattttctcccaattgtgggttatcttttcactgtgtttttgttgttttttgtttgtttgttttt-------------tgctgtgcagaagctttttagtttgctgcaatttcatttctctatttttg-ttttgttgtctgtgcttttggggtcctatatgataaatcattgtccataccaatgtcctgaagcttttctcctatatttcagtagtat--cacagttccaggttttacatttaagtatttaatctattttgagttaatatttttgtatatgatgtgagataaaggtccagtttcattcttctacatatggttatccagtttt--cccaacaccttt i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21750520 664 + 198332218 agctgtactattataatttacattcccaataacagtatacccaggttcccttttctctgtacccttaggatacttgttatcttttgtcttttggctaatagccattctaacagatgtgcaatgat--agatcattgtgattttaatttgcatttacctgatgattagggatgttgaatgtttcttcaggaacctgtgggtcatttctatgtcttcttttgagaaacacctgttcaggtcctttgcccattttttaaaatgcattatgtgttttcttgctattgagctatttgagtttcttacatattttggatattaccccttatcagatgtatggtttgcaaatattttctcccaattgtgggttatcttttcactgtgtttttgttgttgttt------ttgttttt-------------tgctatgcagaagctttttagtttgctgcaatttcatttctctatttttgcttttgttgcctgtgcttttggggtcctatatgataaatcattgtcaataccaatgtcctgaagcttttcccctatatttcagtagtat--cacagttccaggttttacatttaagtatttaatctattttgagttaatatttttgtatatgatgtgagacaaaggtccagtttcattcttctacatatggttatccagtttt--cccaacacattt i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20359805 662 - 85365473 agctgtactattataatttactttcccaataacagtataccccggttcccttttctctgcacccttaggatacctgttatcttttgtcttttggctaatagccattctaatagatgtgcagtgat--agatcattgtgattttaattggtatttacctgatgattagggatgttgaatgtttcttcaggaacttgtgggtcatttgtatgtcttcttttgagaaacgcctgttcaggtcctttgcccatttttt-aaatgcattatttgttttcttgctattgagctatttgagtttcttacatattttggatattaccctttatcagatgtatggtttgcaaatattttctgccaattgtggattatcttttcactgtgtttttgttgttgttt-------tgttttt-------------tgctgtgcagaagctttttagtttgctgcaatttcatttctctatttttgcttttgttgtctgtgcttttggggtcctatatgataaatcattgtccataccagtgtcctgaagcttttcccctatatttcagtagtat--cacagttccaggttttacatttaagtatttaatctattttgagttaatatttttgtatatgatgtgagacaaaggtccagtttcattcttctacatatggttatccagtttt--cccaacaccttt i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16826735 660 + 184069350 agctgtactattataatttacattcccaataacagtatacccaggttcccttttctctgcgcccttaggatacttgttatcttttgtcttttgtctaatagccattctaacagatgtgcagtgat--agatcattgtgattttaatttgcatttccctgatgattagggatgttgactgttttttcaggaa-ctatgggtcatttgtatgtcatcttttgagaaatgcctgttcaggtgctttgcccattttttaaatcgagttatttgttttcttgctattgagccatttgagtttcttacatattttggatgttaccccttatcagatgtatggtctgcaaatattttctcccaattgtgggttatcttttcattatgtttttgttgttgttt------ttgatttt-------------tgctgtgcagaagctttttagtttgctgcaatttcatttctctatttttgcttttgttgcctgtgcttttggggtcctttatgagaaatcattgtccataccaatgtcctgaagctttttctctatatttcagtagtac--cacagttccaggttttacacttaagtattcaacctattttgagttaatatttttgtagatgatgtgagataaaggtccagtttcg---ttctacatatggttatccagtttt--tccaacaccttt i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20876547 661 + 189454096 agctgtactattataatttacattcccaataacagtatacccaggttcccttttctctgcgcccttaggatacttgttatcttttgtcttttgtctaatagccattctaacagatgtgcagtgat--agatcattgtgattttaatttgcatttccctgatgattagggatgttgactgttttttcaggaacctatgggtcatttgtatgtcatcttttgagaaatgcctgttcaggtgctttgcccattttttaaatcgagttatttgttttcttgctattgagccatttgagtttcttacatattttggatgttaccccttatcagatgtatggtctgcaaatattttctcccaattgtgggttatcttttcattatgtttttgttgttgttt------ttgatttt-------------tgctgtgcagaagctttttagtttgctgcaatttcatttctctatttttgcttttgttgcctgtgcttttggggtcctttatgagaaatcattgtccataccaatgtcctgaagctttttctctacatttcagtagtac--cacagttccaggttttacatttaagtattcaacctattttgagttaatatttttgtagatgatgtgagataaaggtccagtttcg---ttctacatatggttatctagtttt--tccaacaccttt i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16466796 661 + 178775436 AGCTGTACtattataatttacattcccaataaCAGTATACccaggttcccttttctctgcgcCCTTAGgatacttgttatcttttgtcttttgtctaatagccattctaacagatgtgcAGTGAT--AgatcattgtgattttaatttgcatttcactgatgattaGGGATGTTGACTGTTTTTTCAGGAACCTACGAGtcatttgtatgtcatcttttgagaaatgcctgttcaggTGCTTTGCCCCTTTTTTAAATcgagttatttgttttcttgctattgagctatttgagtttcttacatattttggatattaccccttatcagatgtatggtttgcaaatattttctcccaattgtgggttatcttttcactgtgtttttgttgttgttt------ttgatttt-------------tgctgtgcagaagctttttagtttgctgcaatttcatttctctatttttgctttcgttgcctgtgcttttggggtcctTTATGAGAAAGCATTGTCCATACCAATGTCCTGAAGCTTTTTCTCTATATTTCAGTAGTAC--CACAGTtccaggttttacatttaagtatttaacctattttgagttaatatttttgtagatgATGTGAGATAAAGGTCCAGTTTCG---TTCTAcatatggttatccagtttt--cccaacaccttt i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19949900 663 - 48547382 agctgtactattataatttacattcccaataacagtatacccaggttcccttttccctgcacctttaggatacttgttatcttttgtcttttgtctaatagccattctaacagatgtgcagtgat--agatcactgtgattttaatttgcatttccctgatgattagggatgttgactgttttttcaggaacctatgggtcatttgtatgtcatcttttgagaaatgcttgttcaggtgctttgcccattttttaaatcgagttatctgttttcttgctattgagctatttgagtttcttgcatattttggatattaccccttatcagatgtacggtttgcaaatattttctcccaattgtgggttatcttttcactgtgtttttgttgttgttt------ttgttttt-------------tgctgtgcagaagctttttagtttgctgcaatttcatttctctatttttgcttttgttgcctgtgcttttggggtccgttatgagaaatcattgtccataccaacgtcctgaagctttttctctatatttcagtagtcc--cacagttccaggttttacatttcagtatttaacctattttgagttaatgtttttgtagatgatgtgagataaaggtccagtttcg---ttctacatatggttatccagttttcccccaacaccttt i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21309896 679 - 190850796 agctgtactattatcatttacattctcaataacagtataaccaggttcccttttctctgcctcattacaagacttgttatcttttgtcttttggctaatagtcattataacagatggtcagtgatcaagatcactgtgatgttaatttgcatttccctgatgattaggactgttgaatgttttttcaggaacctgtgggtcatttctatgtcttcttttgagaaatgcctgttcgggttctttgctcatttttaaaatcaggttatttgttttcttgccattgagctgtttgattttctcacatattttggatattaccccttatcagacgtatggt-tgcaaatattttctccaaactgtgggttatcttttcagtgttttgttgctgttattg------ttgtttttgttgttgctgttgtgttgtgtagaagctttttattttggtgtaatttcatttctctatttttgcttttgttgcctgtgcttttggggtcctatatgagaaatcattgtccataccaatgtcctgaagcttttcccctatatttcagtagtgtcacacagtttcaga-tttacatttaagtctttaatctattttgatttaatgtttttgtacacaatgtgagataaagggctagtttcatacttcttcatgcggttatccagtttt--cccaacaccttt i calJac3.chr3 C 0 I 361 e mm10.chr5 49287773 3264 + 151834684 I e canFam3.chr3 3878300 1758 - 91889043 I a score=5840723.000000 s hg38.chr4_KI270790v1_alt 186676 2059 + 220246 tattgaagacactgtcctctccccatggtgtgttctgggcacctttgtcaaaactacttctggggatatatataaaaaatt-aaattagtatgtcaaaaagatatctgcatttccatgttcatttcatcatgattcacaatagccaagatacagaagcaacctaagtgtccatcaacaaatgaatgaat--aaaaaaatgtggtatatatacacattggaataatattcagccttatacaaattaggaaattctatcatttgtgataatatggaagaaactcaaggatgttctatgctaagtcaaataagccaagcacagaacaacgaatatagtatgatctcacttatatgtggaatctagaaaagttgaactcataggaacaaagagtagaatggtatttaccagaggatgagagggaagggctgatggaaaaagtaaaaatgttggtcaaaggttacaaagtttcagctaaacgggaggaatacattttattgatcaattgtacaacgcgatgaccacagctgctaataacgtgtatttcaaaattgtgaaaagagtagattttaaccattctcaccacagaaagataagtaggtgaggtaatcaaattgttaatcatcttgatttaatctttctgcaataaccatatatatcaaaacatcatattgtaccccataaatatatgccaagtattatttgccaattaaaaacttaaaaATATAAATAAATACAAATTAATACTG-TCTGTAGTCTTCTAGGGTTAAGAGAATCAAAAGATCTGCTTTAGATATATTAGAATGTAG--ATATCTATAATGTACTCAAAAATTAAGATGGATGTT----TTAATTCATTTAAAAATACAtttttgttg-------ttgttttgtttttttgagatggagtctcactctgacaccctggctgagtgtaggggcatgatcttggctcactgcaacctctacctcctgggttcaagtgattctcctgcctcagcctcccgagtagctggcattacaggtgcccgccaccacacccagataatttttatatttttagtagagacagggtttcaccatgttggccaggctggtctcaaactcctgacctcagatgatctgcttgcgttggcctcccaaagtgctgggattacaggagtgagtcaccatgcccggccTACTAAAAATACTTTTTAAAATGAGAGATAAAACTAGAAAACCTACAAATGTCAAAAGGATAATAGATATGTTGTTCAATGcaggctgctacaacaaaataccatagtctgggtggctaaaacaacagacattaatttctcacaattctggagactgagaagtccaagatcgaggtgccagaatattcagattttggtgagggccctctttctaccttggagagtgctgtcttctctctgcatcctcacgtggaggagaaagagagagagaggtggtatcttcctcctcttataaggacactaattctatcctgagcacactatcctcatgaccttatcaaaacccaatgacctccaaatgtcacagctccaaatacaatcacattgagaggttacgactttacatataaatttgtgagcaggaaaaacaaatattcattccgtaAGAGAAgaatactacaaacagccctacaacata-attttcatgaattagatgaaatggaaaaattcctt-aaaaaatacaaactaaaataattcaccaaagattaaatagataatttgaatagctttatacctgttaagtaagtaaatttaatttacaa-tttataaaattttccatt-aaaaaaaacttcagaccacatggtttcactggagaattctatcaaacatgaaaagaagaattaacactaattcttcacaatctcttccagaaaatagacaagagtta-tacttcataattcattttatgagtacagtattggcatgacacaacaactagagaaagacaatatcacagaaaagtaaagtatagacaaatatctcttagaagtatggactcc-aaatcataaacaaaatattatcaaagagaagttagcaatatataaaaagaaatatat s panTro4.chr4 21575623 2060 + 193495092 tattgaagacattgtcctttccccatggtgtgttttgggcacctttgtcaaaactacttctggggatatttataaaaaatt-aaattagtatgtcaaaaagatatcttcatttccatgttcatttcatcatgattcacaatagccaagatacagaagcaaccaaagtgttcatcaacaaatgaatgaat--aaaaaaatgtggtatatatacacattggaataatattcagccttatacaaattaggaaattctaccatttgtgataatatggaagaaactcaaggatgttccatgctaagtcaaataagccaagcacagaacaacgaatattgtatgatctcacttatatgtggaatctacaaaagttgaactcataggaacaaagagtagaatggtatttaccagaggatgagagggaagggctgatggaaaaagtaaaaatgttggtcaaaggttacaaagtttcagctaaacgggaggaatacattttattgatcaattgtacaatgcgatgaccacagctgctaataacgtgtatttcaaaattgtgaaaagagtagattttaaccattctcaccacagaaagataagtaggtgaggtaatcaaattgttaatcatcttaatttaatctttctgcaataaccatatatatcaaaacatcatattgtaccccataaatatatgccaggtattatttgccaattaaaaacttaaaaATATAAATAAATACAAATTAATACTG-TCTGTAGTCTTCTAGGGTTAAGAGAATCAAAAGATCTGCTTTAGATATATTAGAATTTAG--ATATCTATAATGTACTCAAAAATTAAGATGGATGTT----TTAATTCATTTAAAAATACAtttttgttg-------ttgttttgtttttttgagatggagtctcactctgtcaccctggctgagtgtaggggcatgatcttggctcactgcaacctctacctcctgggttcaagtgattctcctgcctcagcctcccgagtagctggcattacaggtgcccgccaccacacccagataatttttctatttttagtagagacagggtttcaccatgttggccaggctggtctcaaactcctgacctcagatgatctgcttgcgttggcctcccaaagtgctgagattacaggagtgagtcaccatgcccggccTACTAAAAATACTTTTTAAAATGAGAGATAAAACTAGAAAACCTACAAATGTCAAAAGGATAATAGATATGTTGTTCAATGcaggctgctacaacaaaataccatagtctgggtggctaaaacaacagacattaatttctcacaattctggagactgagaagtccaagatcgaggtgccagaatattcagattttggtgagggccctctttctaccttggagagtgctgtcttctctctgcatcctcacgtggaggagaaagagagagagaggtggtatcttcctcctcttatatggacactaattctatcctgagcacactatcctcatgaccttatcaaaacccaatgacctccaaatgtcacagctccaaatacaatcacattgagaggttacgactttacatataaatttgtgagcaggaaaaacaaatattcattccgtaAGAGAAgaatactacaaacagccctacaacata-attttcatgaattagatgaaatggaaaaattcctt-aaaaaatacaaactaaaataattcaccaaagattaaatagataatttgaatagctttatacctgttaagtaagtaaatttaatttacaa-tttataaaattttccatt-aaaaaaaccttcagaccacatggtttcactggagaattctatcaaacatgaaaagaagaattaacactaattcttcacaatctcttccagaaaatagacaagagttaatacttcataattcattttatgaatacagtattagcatgacacaacaactagagaaagacaatatcacagaaaagtaaagtacaaacaaatatctcttagaagcatggactcc-aaatcctaaacaaaatattatcaaagagaagttagcaatatataaaaagaaatatat i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21751184 2009 + 198332218 tattgaagacactgtcctttcctcatgatgtgttctgggcacctttgtcaaaactacttctggggatgtatataaaaaatt-aaattagtatgtcaaaaagatatctgcatttccatgttcatttcatcatgattcataatagccaagatacggaagcaacctaagtgttcatcaacaaatgaatgaat---aaaaaatgtggtatatatacacattggaataatattcagccttatacaaattaggaaattctatcatttgtgataatatggaagaaactcaaggatgttttatgctaagttaaataagccaggcacagaataacgaatattgtatgatctcacttatatgtggaatctaga----------------------------------------------------agggaagggctgatggaaaaaggaaaaatgttggtcaaagattacaaagtttcagctaaacagaaggaatacattttattgatcaactgtacaatgcgatgaccacagctgctaacaatgtatacttcaaaattgtgaaaagagtagattttaaccattctcaacacagaaagataagtaggtgaggtaatcgaattgttaatcatcttgatttaatctttctgcaataaccatatatatcaaaacatcatattgtaacccacaaatatatgccaagtattatttgccaattaaaaacttaaaaATATAAATAAATACAAATTAATACTG-TCTGTAGTCTTCTAGGGTTAAGAGAATCAAAAAATCTGCTTTAGATATATTAGAATTTAG--ATATCTATAATGTACTAAAAAATTAAGATGGATGTT----TTAATTCATTTAAAAATACATTTTTGGTG-------TTGttttgtttttttgagatggagtctcactccgtcactctggctgagtgtaggggcatgatcttggctcactgcaacctctacctcctgggttcaagcgattctcctgcctcagcctcccgagtagctggcattacaggtgtccgccaccacgcccggataatttttatatttttggtaaagacagggtttcaccatgttggccaggctggtctcaaactcctgacctcaggtgatctgctcgcgttggcctcccaaagtgctgggattacaatagtgagtcaccacacccggccTACTAAAAATACTTTTtaaaatgagagataaaactagaaaacctataaatgtcaaaaggataatagatatgttggtcaatgcagtctgctacaacaaaatgccatagtctgggtggctaaaataacagacattaatttctcacaattctggagactgacaagtccaagatcgaggtgccagaatattcagattttggtgagggccctctttctagcttgtagagtgctgtcttctctctgcatcctcacacggaggagaaagagagagagaggtggtatcttcctcctcttataaggacactaattctatcatgagcacactaccctcatgaccttatcaaaacctaataacctccaaatgtcgcacctccaaatacaatcacattgagaggttaggactttacatataaatttgtgagcaggaaaaacaaatattcattccgtaagagaagaatactgtaaacaaccctacaacata-attttcatgaattagatgaaatggaaaaattcctt-aaaaaatacaaactaaaataattcaccaaagattaaatagataatttgaatagctttatacctgttaagtaagtaaatttaatttacaa-tttataaaattttccattaaaaaaaaccttcagaccacatggtttcactggagaattctatcaaacatgaaaagaagaattaacactaattcttcacagtctcttccagaaaatagacaagagttaacacttcataattcagtttatgaatacagtattggcatgacacaaaaactagagaaagacaatatcacagaaaagtaaagtacagacaaatatctcttacaagtatggactccaaaatcctaaacaaaatattatcaaagagaaattagcaatatataaaaagaaatatat i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20360467 2061 - 85365473 tattgaagacactgtcctttccccatggtgtgttctgggcacctttgtcaaaactacttctggggatatacataaaaaatt-aaattagtatgtcaaaaagatatctccatttccatgttcatttcatcatgattcataatagccaagatacggaagcaacctaagtgttcatcaacaaatgaatgaat--aaaaaaatgtggtatatatacacattggaataatattcagccttatacaaattaggaaattctatcatttgtgataatatggaagaaactcaaggatgttttatgctaagttaaataagccaggcgcagaacaacgaatattgtatgatctcacttatatgtggaatctagaaaaggtgaactcataggaacaaagagtcgaacggtatttaccagaggacgagagggaagggctgatggaaaaacgaaaaacgctggtcaaaggttacaaagtttcagctaaacaggaagaatacattttattgatcaattgtacaacgcgatgaccacagctgctaataacgtatatttcaaaattgtgaaaagagtagattttaaccattctcaccacagaaagataagtaggtgagataatcaaatggttaatcatcttgatttaatctttctgcaataaccatatatatcgaaacatcatattgtaccccataaatatatgccaagtattatttgtcaattaaaaacttaaaaATATAAATAAATACAAATTAATACCG-TGTGTAGTCTTCTAGGGTTAAGAGAATCAAAAGATCTGCTTTAGATCTATTAGAATTTAG--ATATCTATAATGTACTAAAAAATTAAGATGGATGTT----TTAATTCATTTAAAAATACAtttttgttg-------ttgttttatttttttgagatggagtctcactctgtcaccctggctgagtgtaggggcatgatcttggctcactgcaacctctacctcctgggttcaagcgattctcctgcctcagcctcccgagtagctggcattacaggtgcccgccaccatgcccagataatttttatatttttaatagagacagggtttcaccatgttggccaggctggtctcaaactcctgacctcaggtgatctgctcgcgttggcctcccaaagtgctgggattacaggagtgagtcaccatgcccagccTACTAAAACTACTTTTTAAAATGAGAGCTAAAACTAGAAAACCTACAAATGTCAAAAGGATAATAGATATGTTGGTCAATGGAggctgctacaacaaaataccacagtctgggtggctaaaacaacagacattaatttctcacaattctgaagactaagaagtccaagatcgaggtgccagaatattcagattttggtgagcgccctctttctaccttgtagagtgctgtcttctctctgcatcctcacacggaggagaaagagagagagaggtggtatcttccgcctcttataaggacactaattctatcctgagcacactaccctcatgaccttatcaaaacctaatgacctccaaatgtcacaactccaaataaaaccacactgagaggttaggactttacatataaatttgtgagcaggaaaaacaaatattcattccataAGAGAAgaatactacaaacaaccctacaacata-attttcgtgaattagatgaaatggaaaaatttctt-aaaaaatacaaactaaaacaattcaccaaagattaaatagataatttgaatagctttatacctgttcagtaagtaaatttaatttgcaa-tttataaaattttccata-aaaaaaaccttcagaccacatggtttcactggagaattctatcaaacatcaaaagaagaattaacactaattcttcacaatctcttccagaaaatagacaagagttaatacttcataattcattttatgaatagagtattggcctgacacaaaaactagagaaagacaatatcacagaaaagtaaagtacagacaaatatctcttacaagtatggactccaaaatcctaaacaaactattatcaaagagaaattagcaatatataaaaagaaatatat i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16827395 2033 + 184069350 tattgaagacactgtccttcccccatggtgtgttcttggcacctttgtcaaaactacttctggggatatatataaaaaattgaaattagtatgtcaaaaagatatctgcatttccatgttcatttcatcatgaatcacaatagccaagatatggaagcaatctaagtgttcatcaacaaatgaatt------aaaaaatgtggtatatatacacattggaataatatctagccttatacaaattaggacattctgtcatttgtgataatagggaagaacctcaaggatgtt--atgctaagttaaataagccaggcacagaacgacgagtattgtatgatctcacttatatgtggaatctagaaaagttgaactcataagaacaaagagttgaatggtatttaccagaggatgagagggaagggctgatggacaaaggaagaatgttggtcaaagggtacaaagtttcagctaaacaggaggaataaattttattgatcaattgtacaatgcgatgaccatagctgctaacaatatatatttcaaaattgtg--aagagtagattttaaccattctcaccacagaaagataagtaggtgaggtaatcaaattgctaatcatcttggtttaatctttctgcaataaccacatatatcaaaacatcatattgtaccctataaatatatgccaagtattatttgccaattaaaaCCttaaaaatataaataaatacaaattaataCTGTTGTGTAGTCTTCTAGAGTTAAGAGAATCGACAGATCTGCTTCAGATATATTAGAATTTAG--ATATCTATAATGTACTTAAAAATTAAGATGGATGTT----TCAAGTCATTTAAAAATACAtttttgttg-------ttgttctgtttttttgagatggagtctcaccctgtcaccccagctgagtatagtggcatgatcttggctcactgcaacctctacctcctgggttcaagcgattctcctgcctcagcctcctgagtagccgagattacaggtgcccgccaccacgcctggctaatttttatatttttagtagagatggggtttcaccatgttgggcaggctggtctcaaa--------ctcaggtgatccacccgccacggcctcctaaaatgctgggattacaggagtgagtcaccacgcccggccTACTAAAAATGCTTTTtaaaatgagagataaaaccagaaaacctacaaatgtcaaaaggataatagatatgttggtcaatgcaggctgctacagcaaaataccatagtctgtggggctaaaacaacagac---aatttctcacaattctggagactgagaattccaagatcgaggtgcccgaatactcaggttttggtgacggccgtctttctagcttgtagagtgctgtcttctctctgcatcctcacacggaggagaa------agagatgcggtatcctcctcctcttataaggacatgaattctattgtgagcacactactctcctggcgttatcaaaacctaatgacctccaaatgtcgcaccggcaaatacaatcacattgggaggttaggactttacatacaaatttgtgagcaggaaaaacaaatattcattccgtaagagaagaatactacaaacaaccctacaacata-atgtttgtgaattggatgaaatggaacaattcctt-aaaaaatgcaaactaaaataattcagcaaagattaaatagataatttgaatagctttatacctgt----taagtaaacttaatttacaa-tttatacaattttccatt-aaaaaaaccttcagaccacatggtttcactggagaattctaccaaacatataaaaaagaattaacactaatttttcacaatctcttccagaaaacggacaggagtcaatacttcataattcattttatgaatacagtattggcatgacacaaaagctagagaaggacaatatcacaaaaaagtaaagtacacacaaatatctcttacaagtatggtctccaaaatccttaacaaaacactatcaaagataaattagcaacatataaaaggaaata-gt i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20877208 2037 + 189454096 tattgaagacactgtccttcccccatggtgtgttcttggcacctttgtcaaaactacttctggggatatatataaaaaattgaaattagtatgtcaaaaagatatctgcatttccatgttcatttcatcatgattcataatagccaagatatggaagcaatctaagtgttcatcaacaaatgaata------aaaaaatgtggtatatatacacattggaataatatctagccttatacaaattaggacattctgtcatttgtgataatagggaagaacctcaaggatgtt--atgctaagttaaataagccaggcacagaacgacgagtattgtatgatctcacttatatgtggaatctagaaaagttgaactcataagaacaaagagttgaatggtatttaccagaggatgagagggaagggctgatggacaaaggaagaatgttggtcaaagggtacaaagtttcagctaaacaggaggaataaattttattgatcaattgtacaatgcgatgaccatagctgctaataatatatatttcaaaattgtg--aagagtagattttaaccattctcaccacagaaagataagtaggtgaggtaatcaaattgttaatcatcttggtttaatctttctgcaataaccacatatatcaaaacatcatattgtaccctataaatatatgccaagtattatttgccaattaaaaCCTTAAAAATATAAATAAATACAAATTAATACTGTTGTGTAGTCTTCTAGAGTTAAGAGAATCGACAGATCTGCTTCAGATATATTAGAATTTAG--ATATCTATAATGTACTCAAAAATTAAGATGGATGTT----TCAAGTCATTTAAAAATACAtttttgttg-------ttgttctgtttttttgagatggagtctcaccctgtcaccccagctgagtatagtggcatgatcttggctcactgcaacctctacctcctgggttcaagcaattctcctgcctcagcctcctgagtagctgagattacaggtgcccgccaccacggctggctaatttttatatttttagtagagatggggtttcaccatgttgggcaggctggtctcaaa--------ctcaggtgatccacccgccacggcctcctaaaatgctgggattacaggagtgagtcaccacgcccggccTACTAAAAATGCTTTTtaaaatgagagataaaaccagaaaacctacaaatgtcaaaaggataatagatatgttggtcaatgcaggctgctacagcaaaataccatagtctgtggggctaaaacaacagac---aatttctcacaattctggagactgagaattccaagatcgaggtgcccgaatactcaggttttggtgacggccgtctttctagcttgtagagtgctgtcttctctctgcatcctcacacggaggagaa--agagagagatgcggtatcctcctcctcttataaggacatgaattctattgtgagcacactactctcctgacgttatcaaaacctaatgacctccaaatgtcgcacctccaaatacaatcacattgggaggttaggactttacatacaaatttgtgagcaggaaaaacaaatattcattccgtaagagaagaatactacaaacaaccctacaacata-atgtttgtgaattggatgaaatggaacaattcctt-aaaaaatgcaaactaaaataattcagcaaagattaaatagataatttgaatagctttatacctgt----taagtaaacttaatttacaa-tttatacaattttctatt-aaaaaaaccttcagaccacatggtttcactggagaattctaccaaacatataaaaaagaattaacactaatttttcacaatctcttccagaaaacggacaggagtcaatacttcataattcattttatgaatacagtattggcatgacacaaaaactagagaaagacaatatcacaaaaaagtaaagtacacacaaatatctcttacaagtatggtctccaaaatccttaacaaaacactatcaaagataaattagcaacatataaaaggaaata-gt i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16467457 2020 + 178775436 TATTGAAGACGCTGTCCTTTCCCCAtggtgtgttcttggcacctttgtcaaaactACTTCTGgggatatatataaaaaattgaaattagtatgtcaaaaagatatctgcatttCCATGTTCATTTCATCatgattcataatagccaagatatggaagcaatctaagtgttcatcaacaaatgaata------aaaaaatgtggtatatatacacattggaATAATACCTAGCCTTATACAAAttaggaaattctgtcatttgtggtAATAGGGAAGAACCTCAAGGATgtt--atgctaagttaaataagccaggcacagaacgACGAGtattgtatgatctcacttatatgtggaatctagaaAAGGTGAACTCATAAGAACAAAGAGTTCAATGGTATTTACCAGAGGATGAGAGGGAAGGGCTGATGGACAAAGGAagaatgttggtcaaagggtacaaagtttcagctaAACAGGAGGAATAAATTTTATTGATCAATTGTACAATGCAATGACCATAGCTgctaataatgtatatttcaaaattgtg--aaGAGTAGATTTTAACCATTCTCACCACAGAAAGATAAGTAGGTGAGGTAATCAAATTGTTAATCATCTTGATTTAATCTTTCTGCAATAaccacatatatcaaaacatcatattgtaccctataaatatatgcCAAGtattatttgccaattaaaaccttaaaaatataaataaatacaaattaatactG-TGTGTAGTCTTCTAGAGTTAAGAGAATCGACAGATCTGCTTTAGATATATTAGAATTTAG--ATATCTATAATGTattcaaaaattaagatggatgtt----tcaagtcatttaaaaatacatttttgttg-------ttgttctgtttttttgagatggagtctcaccctgtcaccccagctgagtatagtggcatgatcttggctcactgcaacctctacctcctaggttcaagcgattctcctgcctcagcctcctgagtagctgagattacaggtgcccgccaccacgcctggctaatttttatatttttagtagatatggggtttcaccatgttgggcaggctggtctcaaa--------ctcaggtgatccacctgccacggcctcctaaaatgctgggattacaggagtgagtcaccacgcccggcctactaaaaatactttttaaaatgagagataaaACCAGAAAACCTACAAATGTCAAAAGGATAATAGATATGTTGGTCAATGCAGGCTGCTACAGCAAAACACCATAGTCTGTGGGGCTAAAACAACAGAc---aatttctcacaattctggagactgagaagtccaagatcgaggtgcCCGAATATTCAGGTTTTGGTGACAGCCGTCTTTCTAGCTTGTAGAGTGCTGTCTTCTCTCTGCATCCTCACacggaggagaa--agagagagatgcagtatcttcctcctcttataaggacacgaATTCTATTGTGAGCACACTACCCTCCTGACCTTATCAAAACCTAATGACTTCCAAATGTTGCACCTCCAAATACAATGACATTGGGAGGTTAGGACTTTACATATAAATTTGTGagcaggaaaaacaaatattcattctGT----------------AAACAACCCTACAACATAtttttttGTGAATTAGATGAAATGGAACAATTCCTT-AAAATATGCAAactaaaataattcagcaaagattaaatagataatttgaatagCTTTATACCTGT----TAAGTAACtttaatttacaattttatacaattttcCATT----AAAACCTTCAGACAACgtggtttcactggagaattctaccaaacatgtaaaaaagaattaacacttatttttcacaatctcttccagaaaatagacaGGAGTTAATACTgcataattcattttatgaatacaGTATTGGCATGACACAAAAACTACAGAAAGACAATATCACAAAAAAGTAAAGTACAGACAAATATTTCTTACAAGTATGAACtccaaaatccttaacaaaaaattatcaaagaTAAATTAGcaatacacaaaaagaaatacgT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19950563 2044 - 48547382 tattgaagacactgtcctttccccatggtgtgttcttggcacctttgtcaaaactacttctggggatatatataaaaaattgaaattagtatgtcaaaaagatatctgcatttccatgttcatttcatcatgattcataatagccaagatatggaagcaatctaagtgttcatcaacaaatgaata------aaaaaatgtggtatagatacacattggaataatatctagccttatacaaattaggaaattctgtcatttgtaataatagggaagaacctcaaggatgtt--atgctaagttaaataagccaggcacagaacgacgagtattgtatgatctcacttatatgtggaatctagaaaagttgaactcataagaacaaagagttgaatggtatttaccagaggatgagagggaagggctgatggacaaaggaagaatgttggtcaaagggtacaaagtttcagctaaacaggaggaataaattttattggtcaattgtacaatgcgatgaccatagctgctaataatgtatatttcaaaattgtg--aagagtagattttaatcattctcaccacagaaagataagtaggtgaggtaatcaaattgttaatcatcctgatttaatctttctgcaataaccacatatatcaaaacatcatattgtaccctataaatatatgccaagtattatttgccaattaaaaCCTTAAAAATATAAATAAATACAAATTAATACTGTTGTGTAGTCTTCTAGAGTTAAGAGAATTGACAGATCTGCTTTAGATATATTAGAATTTAGATATATCTATAATGTACTCAAAAATTAAGATGGATGTT----TTGAGTCATTTAAAAATACAttt---ttg-------ttgttctgtttttttgagatggagtctcaccctgtccccccagctgagtatagtggcatgatcttggctcactgcaacctctacctcctgggttcaagcgattctcctgcctcagcctcctgagtagctgagattacaggtgcccgccaccacgcctggctaatttttatatttctagtagagatggggtttcaccatgttgggcaggctggtctcaaactcctgacctcaggtgatccacccgccacggcctcctaaaatgctgagattacaggagtgagtcaccacgcccggccTACTAAAAATACTTGTtaaaatgagagataaaaccagaaaacctacaaatgtcaaaaggataatagacatgttggtcaatgcaggctgctacagcaaaataccatagtctgcggggctaaaacaacagac---aatttctcacaattctggagactgagaattccaagatcgaggtgcccgaatactcaggttttggtgacggccgtctttctagcttgtagagtgctgtcttctctctgcatcctcacacggaggagaa--agagagagatgcggtatcttcctcctctcacaaggacatgaattctattgtgagcacactaccctcctgacattatcaaaacctaatgacctccaaatgtcgcacctccaaatacaatcacattgggaggttaggactttacatacaaatttgtgagcaggaaaaacaaatattcattccgtaagagaagaatactacaaacaaccctacaacata-atgtttgtgaattagatgaaatggaacaattcctt-aaaaaatgcaaactaaaataattcagcaaagattaaatagataatttgaatagctttatacctgt----taagtaaacttaatttacaa-tttatacaattttccatt-aaaaaaaccttcagaccacatggtttcactggagaattctaccaaacatataaaaaagaattaacactaatttttcacaatctcttccagaaaacagacaggagtcaatacttcataattcattttatgaatacagtattggcatgacacaaaaactagagaaagacaatatcacaaaaaagtaaagtacacacaaatatctcttacaagtatggtctccaaaatccttaacaaaatgctatcaaagataaattagcaatatataaaaggaaata-gt i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21310936 2058 - 190850796 tgttgaagaaactgtcctttgcccatggtatgttcttggttcctctgtcaaaaccacttctggggatatataccaaaaattgaaataaatatgtcaaaaaa--atctgcatttccatg-----ttcatcatgattcataacagccaagatacgaaagcaacctaagtgttcagcaataaatgaatggataaaaacaaatgtggtatatacatgcattggaatactacacagccttataaaaattaggaaattctgtcatttgtgacaatatggaagaacctcaaggatgtt--atgttaagttaaagaagccaggcacagaaagacaaagattggatgatctcacctatatgtggaatctagaaaaattgaactcatagaaacagagagtagaatggtatttaccagaggatgagagggaagggctgatagaaaaaggaaaaatgttgctcaaagggtataaaatttcagttaaacaggaggaatacattttactgatcaattgtacagtgtgatgaccatagctgctaattacatatctttcaaaattgagaaaagagtagattttaaccattctcaccacagaatgataagtaggtgaggtaatcaaactgttaatcaacttgattcaatttttctggaataaccacatatatcaaagcatcatagtgtaccccataactatatgcaaagtagtatttaccaattaaaa-CTTTGAAATATAAATAAACACAAATTAATACAA-TGTGTAGTCTTCTAT-GTTAAGAAAATCAAAAGTTCTGCTTTAGATATATTAGAATTTAG--ATATTTATAATATACTCAAAAATTAAGATGGAAGTTTTAATTAATTCATTTAAAAATACttttttattgttttgttttattttgttttgttt-gacagagtctctctctgtcaccctggctgaatgcagtggcatgatctgggctcactgcaacctctacctcctgggttcaagtgattctcctgcctcagcctccctagtagctggtattacaggtgcctgccaccatgcctggctaatttttgtacttttagtagagatgtagtctcaccatgttggccaggctggtctcaaactccttacctcaggtgatctgcctgccctggcctcccaaaatgctgggattacaggcgtgaatc-ccacacccagccTACTAAAAATACTATTtaaaataagagatatgattagaaaacccacaaatgtcaaaaggataacagatgcgttggtcagtgcaggatgccacaacaaaataccatactctgggtagctaaaaaaaaaaacagatatttctcaaaattctgcagactgtgaagcccaagaccaaggtgccagaatattcagattttggtgagggccctcttcataggttgtagagtgcggtcttctctctgcatcctcacatgaaggagaa----acagagatttggtgtctttctcctcttataaggacactaattctatcatgagcacactatcctcatgaccctatcaaaacctaatgacctccaaaagttgcacctccaaatacaatcacattgggaggttaggacttcccacataaatttgtgagcaggaaaaacgaatattcattccataagagaagaatactacaaacaatcctacaagata-attttcatgaattacatgaaatggaacaatttcttaaaaaaatgcaaactaaaactattaactaaagcttaaacagatgatttaaatagcttcatacctcttaaataaataaatttaatttacac-tttataaaacttttcata-aacaaaatcttcagaccacttggttttaccagagaattctaccaaacatgtaaagaagaattaacactaattcttcccaatctcttccagaaaatagacaggagttaatactttataattcattttgtgcatgtactgttgaaaagacacagaaacgagaaaaagacaacatcatgaaaacgtaaagtacggacaaatatctcttacaagtatggactccaaaatccttaacaaaatattatcaaagagaaatt-gcaacttatgaaaagaaatatgt i calJac3.chr3 I 361 I 1107 e mm10.chr5 49287773 3264 + 151834684 I e canFam3.chr3 3878300 1758 - 91889043 I a score=891187.000000 s hg38.chr4_KI270790v1_alt 188735 462 + 220246 attatagtcaggtagagttcattccagggat-gcaagcctgggtcaatatttaaaaaatcaaagtagtacatcatattatcagg-cc------ccccacaaaaaaaaa------tcacatgattatattcactgatgca---------------------------------------------------------------------aaaaaaagcatatgacaaaattcaacactgattcatgattaaaaaaaaa--t---------------------------------------------------ccaagaaataggaatagacaaactgctttactttgataaagaacatctacaaaaacctactagtaacattatgattaatggtgaaaggctgaatgttttcacccaaagataaggatcaagacaaaaaagtgcttcaaccaatgttattcaacatagtgttggaagtgctagccagtacaatgaggtaagaaaagaaacttaaaggcatacagagtgtaaagaaataaataaaatctttccatttgctgataagatgattttctacatacaaaaccc-aaagaatctat s panTro4.chr4 21577683 463 + 193495092 attatagtcaggtagagttcattccagggat-gcaagcctggttcaatatttaaaaaatcaaagtagtacatcatattatcagg-cc------ccccacaaaaaaaa-------tcacatgattatattcattgatgca---------------------------------------------------------------------aaaaaaagcctatgacaaaattcaacactcattcatgataaaaaaaaaaaat---------------------------------------------------ccaagaaataggaatagacaaactgctttactttgataaagaacatctacaaaaatctactagtaacattatgattaatggtgaaaggctgaatgtcttcacccaaagataaggatcaagacaaaaaagtgcttcaaccaatgttattcaacatagtgttggaagtgctagccagtacaatgaggtaagaaaagaaacttaaaggcatacagattgtaaagaaataaataaaatctttccatttgctgataagatgattttctatatacaaaaccc-aaagaatctat i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21753193 462 + 198332218 attataatcaggtagagttcattctggggat-gcaagcctggttcaatattaaaaaaatcaaagtagtacatcatattatcaggccc------ccccacaaaaaaaaa------tcacgtgattatattcattgatgc----------------------------------------------------------------------aaaaaaagcatatgacaaaattcaaaactcattcatgataaaaaaaaaa--t---------------------------------------------------ccaagaaataggaatagacaaactgcttcactttgataaagaacatctacaaaaacctattagtaacattatgattaatggtgaaaggctgaatgttttcacccaaagataaggatcaagacaaaaaagtgcttcaaccaatgttattcaacatagtgttggaagtgctagccagtacaatgaggcaagaaaagaaacttaaaggtatacagattgtaaagaaataaataaaatatttccatttgctgataagatgattttctatatacaaaaccc-aaggaatctat i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20362528 456 - 85365473 attataatcaggtagagttcattctggggat-gcaagcctggttcagtattaaaaaaatcaaagtagtacatcatattatcagg--c------ccccacaaaaaaaa-------tcacgtgattatattcactgatgc----------------------------------------------------------------------aaaagaagcatatgacaaaattcaaaactcattcatgattaaaaaaaaa--t---------------------------------------------------ccaagaaataggaatagacaaactgctttactttgataaagaacatctacaaaaacctactagtaacattatgattaatggtgaaaggctgaatgttttcacccaaagataaggatcaagacaaaaaagtgcttcaaccaatgttattcaacatagggttggaagtgctagccagtataatgagataagaaaagaaacttaaaggcatacagattgtaaagaaataaataaaatctttccatttgc---taagattattttctatatacaaaaccg-aaggaatctat i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16829428 474 + 184069350 attataaccaggtagagttcattctggggat-gcaaacctggttcaatatttaaaaaatcaaagtagtatatcatactatcagg-cc------aaaaaaaaaaaaaaaaaa---------------------------annnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn------------------------------------------------------------nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn------------------------------ctttgataaagaacatctacaaaaacctactaataacattatgattaatggtgaaaggctaagtgctttcacccaaagataagggtcaagataaaaaagtgcttcaatcaatgttattcaacatagtgttagaagtgctagccagtacgataaggtaagaaaagaaacttaaaggcatacggattgtaaataaataaacaaaatctttccatttgctgataagatgattttctgtatacaaaacccaaaggaatctat i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20879245 476 + 189454096 attataaccaggtagagttcattctggggat-gcaaacctggttcaatatttaaaaaatcaaagtagtatatcatactatcagg-cc------aaaaaaaaaaaaaaaaaagaatcacttgattatattcactgatgca-------------------------------------------------------------aaaaaaaaaaaaaaagcatatgacaaaattcaaaactcattcatgattaaaaaaaaa--t---------------------------------------------------ccaagaaataggaatagagaaactgcctcactttgataaagaacatctacaaaaacctactaataacattatgattaatggtgaaaggctaagtgctttcacccaaagataagggtcaagataaaaaagtgcttcaatcaatgttattcaacatagtgttagaagtgctagccagtacgataaggtaagaaaagaaacttaaaggcatacggattgtaaataaataaacaaaatctttccatttgctgataagatgattttctgtatacaaaaccc-aaggaatctat i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16469477 436 + 178775436 ATTATAACCAGGTAGAGTTCATTCTGGGGATGGCAAGTCtggttcaatattttaaaaatcaaagtagtACATCATAttatcagg-t-----------aaaaaaaaaaaaaagaatcatgtgaTTATATTCATTGATGCa--------------------------------------------------------------------aaaaaaaGGCATATGACAAAATTCAAAACTCATTCATGATT----------------------------------------------------------------------------------AAACTGCTTCactttgataaagaacatctacaaaaacctACTAATAACATTATGATTAATGGTGAAAGGCTGAGTGCTTTCACCCAAAGATAAGGATCAAGACAAAAAAGTGCTTCGATcaatgttattcaacatagtgttggaagtacTAGCCAGTACAATGAGGtaagaaaagaaacttaaaggcatacagattgtaaataaataaacaaaatctttcCATTTGCTGATAAGATGATTTTCTACATACAAAACCC-AAGGAATCTac i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19952607 474 - 48547382 attataaccaggtagagttcattctggggat-gcaaacctggttcaatatttaaaaaatcaaagtagtatatcatactatcagg-ccaaaaaaaaaaaaaaaaaaaaaaaaaaatcacttgattacattcattgatgca-----------------------------------------------------------------aaaaaaaaaaagcatatgacaaaattcaaaactcattcatgattaaaaaaaaa--t---------------------------------------------------ccaagaaataggaatagagaaactgcctcactttgataaagaacatctacaaaaacctactaataacattatgattaatggtgaaaggctaagtgctttcacccaaagataagggtcaagacaaaaaaatgct----tcaatgttattcaacatagtgttagaagtgctagccagtacgatgaggtaagaaaagaaacttaaaggcatacagattgtaaataaataaacaaaatctttccatttgctgatgagatgattttctgcatacaaaaccc-aaggaatctat i chlSab2.chr27 C 0 C 0 e mm10.chr5 49287773 3264 + 151834684 I e calJac3.chr3 21312994 1107 - 190850796 I e canFam3.chr3 3878300 1758 - 91889043 I a score=-384.000000 s hg38.chr4_KI270790v1_alt 189197 2 + 220246 aa- s panTro4.chr4 21578146 2 + 193495092 aa- i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21753655 2 + 198332218 aa- i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20362984 2 - 85365473 aa- i nomLeu3.chr20 C 0 C 0 s papAnu2.chr5 16469913 2 + 178775436 -ac i papAnu2.chr5 C 0 C 0 e mm10.chr5 49287773 3264 + 151834684 I e chlSab2.chr27 19953081 0 - 48547382 C e macFas5.chr5 20879721 0 + 189454096 C e rheMac3.chr5 16829902 0 + 184069350 C e calJac3.chr3 21312994 1107 - 190850796 I e canFam3.chr3 3878300 1758 - 91889043 I a score=71328.000000 s hg38.chr4_KI270790v1_alt 189199 138 + 220246 aaattaaaatttctcttttttt--attatactttaagttttagggtgcatgtgcacatggatgaagctggaaaccatcattctcagcaaactatcgcaaggacaaaaaaccaaacaccacatgttctcactcataggtgg s panTro4.chr4 21578148 138 + 193495092 aaaTTAAAAtttctcttttttt--attatactttaagttttagggtgcatgtgcacatggatgaagctggaaaccatcattctcagcaaactatcgcaaggacaaaaaaccaaacaccacatgttctcactcacaggtgg i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21753657 140 + 198332218 aaattaaaatttcttttttttttaattttactttaagttttagggtacatgtgcacatggatgaagctggaaaccatcattctcagcaaactatcgcaaggacaaaaaactaaacaccgcatgttctcactcataggtgg i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20362986 137 - 85365473 aaattaaaatttctttttttt---attatactttaagttttagcgtgcatgtgcacatggatgaagctggaaaccatcattctcagcaaactatctcaaggacaaaaaaccaaacaccgcatgttctcactcataggtgg i nomLeu3.chr20 C 0 C 0 e mm10.chr5 49287773 3264 + 151834684 I e chlSab2.chr27 19953081 0 - 48547382 C e macFas5.chr5 20879721 0 + 189454096 C e rheMac3.chr5 16829902 0 + 184069350 C e calJac3.chr3 21312994 1107 - 190850796 I e canFam3.chr3 3878300 1758 - 91889043 I e papAnu2.chr5 16469915 0 + 178775436 C a score=1911.000000 s hg38.chr4_KI270790v1_alt 189337 1 + 220246 a s panTro4.chr4 21578286 1 + 193495092 a i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21753797 1 + 198332218 a i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20363123 1 - 85365473 a i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16829902 1 + 184069350 a i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20879721 1 + 189454096 a i macFas5.chr5 C 0 C 0 s chlSab2.chr27 19953081 1 - 48547382 a i chlSab2.chr27 C 0 C 0 e mm10.chr5 49287773 3264 + 151834684 I e calJac3.chr3 21312994 1107 - 190850796 I e canFam3.chr3 3878300 1758 - 91889043 I e papAnu2.chr5 16469915 0 + 178775436 C a score=2548.000000 s hg38.chr4_KI270790v1_alt 189338 1 + 220246 a s panTro4.chr4 21578287 1 + 193495092 a i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21753798 1 + 198332218 a i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20363124 1 - 85365473 a i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16829903 1 + 184069350 a i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20879722 1 + 189454096 a i macFas5.chr5 C 0 C 0 s chlSab2.chr27 19953082 1 - 48547382 a i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21314101 1 - 190850796 a i calJac3.chr3 I 1107 C 0 e mm10.chr5 49287773 3264 + 151834684 I e canFam3.chr3 3878300 1758 - 91889043 I e papAnu2.chr5 16469915 0 + 178775436 C a score=3108651.000000 s hg38.chr4_KI270790v1_alt 189339 1068 + 220246 aaattaaaatttctagtataaattagtgtcttcaggaatgtcataggatactagctaagtat-----tcaattatactacttg-aaaaaacctgttgtactagcaatgaacatatgggcactaaaatttaaaatacaatatcatttacaatgactcaaaaaatgaaatactttggtgtgtgtcaaacaaaacatatacaagacttgtgtgctgaaaattacaaaaactctgataaaaaataaaaagatgattt------------------------------aaataaaac-----------------atagtaaagatgtcagttc---------------------tttactgcaactgcaagcaaaatt---acaagacttttcgatcatagacaagatttttcaaaaaaatgtatatagatgtacaaaggaactagaatagccagcacaattttgaaaagtaagtcttgaaatcaggtagaatga-ctttgagacttatatggctgcagttctcaagtttgtgaggtatggttagaacaacagatgagcacatggttcagtggtac--agggtagaaaatgcagaaatagagccacacaattatgcacacctaa-ttttgacaaagatgcaagagcagctattcagtagaggaaagacagcctttcaac-agtgacgctggagcaaatggacatccataggcaagaacccaaccttggtgaagatctcacaccttgtataaatactagctcaaaatacatcacaggcttaaatgtaaaatgtaaaactgttaaagttttag--aaaaa-aaaagaagaaaatcttcagaatctagggctacgcagagtccttagcaatgttcattgctggtagaacagatgttttcaattagtatatattccaaaaacatgagccataaaaggaaaaattaataaattagatggcatcaaagtttaatactttcactcatcagagaccctgtcaagacaatgaaaagacaacatacagagtgaaagtgaaata--tgcaaaccacttatctgacaaaggatttgtatctagagtatataaagactttgaat-attcaacaatagtgaagcacacaattcaattagaacatgagcaaaaaacatggagagtcatttcaccac s panTro4.chr4 21578288 1065 + 193495092 aAATTaaaatttctagtataaattagtgtcttcaggaatgtcataggatactagctaagtat-----tcaattatactacttg-aaaaaatctgttgtactagcaatgaacatatgggcactaaaatttaaaatacaatatcatttacaatgactcaaaaaatgaaatactttggtgtgtgtcaaacaaaacatatacaagacttgtgtgctaaaaattacaaaaactctgataaaaaataaaaagatgattt------------------------------aaataaaac-----------------atagtaaagatgtcagttc---------------------tttactgcaactgcaagcaaaatt---acaagacttttcgaacatagacaagatttttcaaaaaa-tgtatatagatgtacaaaggaactagaatagccagcacacttttgaaaagtaagtcttgaaatcaagtagaatga-ctttgagacttatatggctgcagttctcaagtttgtgaggtatggttagaacaacagatgagcacatggttcagtggtac--agggtagaaaatgcagaaatagagccacacaattatgcacacctaa-ttttgacaaagatgcaagagcagctattcagtagaggaaagacagcctttcaac-agtgatgctggagcaaatggacatccttaggcaagaacccaaccttggtgaagatctcacaccttgtataaatactagctcaaaatacatcacaggcttaaatgtaaaatgtaaaactgttaaagttttag--aaaaa-aaaagaagaaaatcttcagaatctagggctacgcagagtccttagcaatgttcattgctggtaaaacagatgttttcaattagtatatattccaaaaacatgagccataaaaggaaaaattaataaattagatggcatcaaagtttaatactttcactcatcagagaccctgtcaagacaatgaaaaga--acatacagagtgaaagtgaaata--tgcaaaccacttatctgacaaaggatttgtatctagagtatataaaaactttgaat-attcaacaatagagaagcacgcaattcaattagaacatgagcaaaaaacatggagagtcatttcaccac i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21753799 1072 + 198332218 aaattaaaatttctagtataaattagtgtcttcaggaatgtcacaggatactagctaaacat-----tcaattatactacttg-aaaaaatctgtagtactagcaatgaacatatgggcactaaaatttaaaatacaatatcatttacaatgactcaaaaaatgaaataatttggtctgtgtcaaacaaaacatatacaagacttatgtgctaaaaattacaaaaactctgataaaaaataaaaagatgattt------------------------------aaataaaac-----------------ataggaaagatgtcagttc---------------------tttactgcaactgcaagcaaaattacaacaagacttttcgaacatagacaagatttttcaaaaaa-tgtatatagatgtacaaaggaactagaatagccagcacaattttgaaaagtaagtcttgaaatcaggtagaatga-ttttgagacttatatggctgcagttctcaagtttgtgaggtatggttccaacagcagatgagcacatggttcagtggtgc--agagtagaaagtgcagaaatagagccatacaattatgcacatctaa-ttttgacaaagatgcaagagcagctattcaatagaggaaagatagcctttcaac-agtgatgctggagcaaatggacatccataggcaagaacccaaccttggtgaagatctcacaccttgtataaatactagctcaaaatacatcacaggcttaaatgtaaaatgtaaaactgttaaagttttagaaaaaaa-aaaaaaagaaaatcttcagaatctagggctaggcagagtccttagcaatgttcattgctggtaaaacagatgttttcaattagtatatattccaaaaacataagccataaaaggagaaattaataaattagatggcatcaaagttgaatactttcactcatcagagaccctgtcaagacaatgaaaagacaacatacagagtgaaactgaaata--tgcaaaccacttatctgacaaaggatttgtatctagaatatataaaaactttgaat-attcaacaatagagaagcacacaatccaattagaacatgagcaaaaaacatgcagagtcatttcaccac i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20363125 1070 - 85365473 aaattaaaatttctagtataaattagggtcttcaggaatgtcataggatactagctaaatat-----tcaattatactacttgaaaaaaatctgttgtactagcaatgaacatatgggcactaaaatttaaaatacagtatcatttacaatgactcaaaaaatgaaatactttggtgtgtgtcaaacaaaacatatacaagacttgtgtgctaaaaattacaaaaactctgataaaaaataaaaagatgattt------------------------------aaataaaac-----------------acagtaaagatgtcagttc---------------------tttactgcaactgcaagcaaaattacaacaagacttttcgaatatagacaagatttttcaaaaa--tgtatatagatgtacaaaggaactagaatagccagcacaactttgaaaagtaagtcttgaaatcaggtagaacga-ttttgagacttatatggctgcagttctcaggtttgtgaggtatggttagaacaacagatgagcacatgattcagtggtac--agagtagaaaatgcagaaatagagccacacaattatgcacacctaa-ttttgacaaagatgcaagagcagctattcaatagacgaaagacagcctttcaac-agtgatgctggagcaaatggacatccataggcaagaacccaaccttagagaagatctcacacctcgtataaatactagctcaaaatacatcacaggcttaaatgtaaaatgtaaaactgttaaagttttag--aaaaa-aaaagaagaaaatcttcagaatctagggctaggcagagtctttagcaatgttcattgctggtaaaacagatgttttcaattagtatatattccaaaaacatgagccataaaaggagaaattaataaattagatggcatcaaagtttaatactttcactcatcagagaccctgtcaagacaatgaaaagacaacatacagagtgaaagtgaaatc--tgcaaaccacttatctgacaaaggatttgtatctagaatatataaaaactttgaat-attcaacaatagagaagcacacaatccaattagaacatgagcaaaaaacatggagagtcatttcaccac i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16829904 1070 + 184069350 aaattaaaatttctagtataaattagtgtcttcaggaatgtcataggatactagctaaatat-----tcaattatactacttgcaaaaaatctgttgtactagcaatgaacatatgggcactaaaatttaaaacacaatatcatttacaatgactcaaaaaatgaaatactttggtgtgtgtcaaacaaaacatacacaagacttgtgtgctaacaattacaaaattgctga-aaaaaataaaaagatgattt------------------------------aaataaaat-----------------atactaaagatgtcagttc---------------------tttactgcaactgcaagcaaaattaccacaagacttttcgaatatagacaagatttttcaaaaa--tgtatacagatgtacaaaggaactagaatagccagcacaattttgaaaagtaagtcttgaaatcaggtagagcga-ttttaagacttacatggctgcagttctcaagtttgtgaggtatgattagaacaacagatgggcacatggttcagtggtac--agagtagaaaacgcagaaatacagctacacgattatgcacacctaa-ttttgacaaagatgcaacagcagctattcaagagaggaaaggcagcctttcaac-agtgatgctggagcacatggacatccataggcaagaacccaaccttggtgaagatctcacaccttgtataaatattaact-aaaatacatgacaggcttaaatgtaaaatgtaaaactgttaaagttttag-aaaaaa-agaagaagaaaatcttcagaatctagggctaggcagagtccttagcaatgttcattgctagtaaaacagat-ttttcaagtagtatatattccaaaaacacgagccataaaaggagaaattaataaattagatggcatcaaagtttaatactttcacacatcagagaccctgtcaagacaatgaaaagacaacatacagagtgaaagtgaaatatctgcaaaccacttatctgacaaaggatttgtatctagaatatataaaaactttgaat-attcaacaatagagaagcacacaatccaattagaacatgagcgaaaaacacggagagtcatttcaccag i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20879723 1071 + 189454096 aaattaaaatttctagtataaattagtgtcttcaggaatgtcataggatactagctaaatat-----tcaattatactacttgcaaaaactctgttgtactagcaatgaacatatgggcactaaaatttaaaacacaatatcatttacaatgactcaaaaaatgaaatactttggtgtgtgtcaaacaaaacatacacaagacttgtgtgctaacaattacaaaattgctga-aaaaaataaaaagatgattt------------------------------aaataaaAT-----------------GTACTAAAGATGTCAGTTC---------------------tttactgcaactgcaagcaaaattaccacaagacttttcgaatatagacaagatttttcaaaaa--tgtatacagatgtacaaaggaactagaatagccagcacaattttgaaaagtaagtcttgaaatcaggtagagtga-ttttaagacttacatggctgcagttctcaagtttgtgaggtatggttagaacaacagatgggcacatggttcagtggtac--agagtagaaaacgcagaaatacagctacacgattatgcacacctaa-ttttgacaaagatgcaacagcagctattcaagagaggaaaggcagcctttcaac-agtgatgctggagcacatggacatccataggcaagaacccaaccttggtgaagatctcacaccttgtataaatattaactcaaaatacatgacaggcttaaatgtaaaatgtaaaactgttaaagttttag-aaaaaa-agaagaagaaaatctttagaatctagggctaggcagagtccttagcaatgttcattgctagtaaaacagat-ttttcaagtagtatatattccaaaaacacgagccataaaaggagaaattaataaattagatggcatcaaagtttaatactttcacacatcagagaccctgtcaagacaatgaaaagacaacatacagagtgaaagtgaaatatctgcaaaccacttatctgacaaaggatttgtatctagaatatataaaaactttgaat-attcaacaatagagaagcacacaatccaattagaacatgagcgaaaaacacggagagtcatttcaccag i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16469915 1117 + 178775436 aaattaaaatttctaGTATAAATTAGTGTCTTCACGAATGTCATAGGATACTAGCTAAATAT-----TCAATTATGCTACTTG-AAAAAATCTGTTGTACTAGCAATGAACATACGggcactaaaatttaaaacacaatatcATTTACAACgactcaaaaaatgaaatactttggtGTGTGTCAAACAAAACATATACATGACTTGTGTGCTAACAATTACGAAATctctgataaaatataaaaagatgctttaaatactaaatataaatataaattataataaaataaaatataaaaagatgctctaAATactaaagatgtcagttc---------------------tttaCTGCAACTGCAAGCCAAATTACCACAAGACTTCT--AATATAGACAAGgtttttcaaaaa--tgtgtatAGACGTACAAAGGAACTAGAACAGCCAGCACAATTTTGAaaagtaagtcttgaaatcaggtagagcAA-TTTTAAGACTTACATGGCTGCAGTTCTCAAGTTTGTGAGGTATGGTTAGAACAACAGATGAGCACATGGTTCACTGGTAC--AGAGCAGAAAACGCAGAAATAGAGCTACACAATTATGCACACCTaa-ttttgacaaagatgcaagAGCAGCTATTCAAGAGAGGAAAGGCAGCCTTTCAAC-AGTGATGCTGGATCAAATGGACATCCATAGGCAAGAACCCAACCTTGGTGAAGATCTCACACCTTGTATAAATATTAGCTCAAAATACATCAcaggcttaaatgtaaaatgtaaaacagttaaagttttag-aaaaaagaaaagaagaaaatcttcagaatCTAGGGCTAGGCAGAGTCCTCAGCAATGTTCATTGCTAGTAAAACAGAT-TTTTCAAGTAGTATATAATCCAAAAACATGAGCCATAAAaggagaaattaataaattagatgGCATCAAAGTTCAATACTTTCACTCATCAGAGACCCTGTcaagacaatgaaaagacaacatacagagtgaaagtgaaatatctgcaaaccacttatctgacaaaggatttgtatccagaatatataaaaactttGAAT-ATTCAACAATAGAGAAGCACACAATCCAATCAGAACATGAGCAAAAAACATGGAGAGTCATTTCATCAA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19953083 1074 - 48547382 aaattaaaatttctagtataaattagtatcttcaggaatgtcatagaatactagctaaatat-----tcaattatactacttgcaaaaaatctgttgtactagcaatgaacatatgggcactaaaatttaaaacacaatatcatttacaatgactcaaaaaatgaaatactttggtgtgtgtcaaacaaaacatacacaagacttgtgtgctaacaattacaaaattgctgaaaaaaaataaaaagatgattt------------------------------aaacaaaAT-----------------GTACTAAAGATGTCAGTTC---------------------tttactgcaactgcaagcaaaattaccacaagactttttgaatatagacaagatttttcaaaaa--tgtatatagatgtacaaaggaactagaatagccagcacaattttgaaaagtaagtcttgaaatcaggtagagcgatttttaagacttacatggctgcagttctcaagtttgtgaggtatggttagaataacagatgggcacatggttcagtggtac--agagtagaaaacgcagaactagagctacacgattatgcacacctaa-ttttgacaaagatggaacagcagctattcaagagaggaaaggcagcctttcaac-agtgatactggagcacatggacatccataggcaagaacccaaccttggtgaagatctcacatcttgtataaatattagcgcaaaatacatgacaggcttaaatgtaaaatgtaaaactgttaaagttttag-aaaaaa-agaagaagaaaatcttcagaatctagggctaggcagagtccttagcaatgttcattgctagtaaaacagat-ttttcaagtagtatatattccaaaaacatgagccataaaaggagaaattaataaattagatggcatcaaagtttaatactttcacacatcagagaccctgtcaagacaatgaaaagacaacatatagagtgaaagtgaaatatctgcaaaccacttatctgacaaaggatttgtatctagaatatataaaaactttgaataattcaacaatagagaagcacacaatccaattagaacatgagcgaaacacatggagagtcatttcaccaa i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21314102 1093 - 190850796 aaaataaaatttcgagaacaaatgattatcttcagaaatgtcataggatactagaaatatatcaggataagttatactacttg-aaaaagtctgttgtgctagcaatgaatatatgggcactaaaatttaaaatacaatataatttacaatgactaaaaaaatgaaatgtttcggtgtgtgtcaaacaaaacatatatgagatttctgtgctaaaaattacaaaaactctgatttttttaaaacagatgattt------------------------------aaataaaac-----------------atagtaaagatgtcagttctttcctaaattgatatataggtttactgccattgcaagcaaaagtccaacaaaacgtttctaatatagatgagatttttcaaaaa--tgtacatagatgtacaaaggaactagaatagccagcacaattttcaaaagtaagtcttgaaatcaggtagaatga-ttctaagacttatatggctccagctctcatgtttgtgagggatggttagagcaacagatgagcacatggttcagttgaacagagagtgaaaaacccagaaattgaggtacacaattatgcacacctgatttttgacaaagatgcaagagcagatattcgatggaggaaagatagcctttcaacaagtgatactggagcaaatggacttccataggcaagaactcaacctttgtgaagacctcacaccttgcataaaatttagctcacaatccatcacaggcttaaatgtaaaatgtaaaactgttaatgttttag--ggaaa-aaaagagaaaaaaattcagaatctagggctaggcagagtccttaacaatgctcattgctagtaaaacagattttttcaagtagtatatattccagaaacatgagccacaaaagaaaaaatt-ataaattagatgccatcaaagtttaacactttcactcatcagagaccctatcaagacaatgaagaaa--acatacagagtga-----aaatacctgcaaaccacttatctgacaaatgatatgtatctagaatatataaaaactttgaat-attcaacgatagagaagcacacagtacaattagaacatgagcaaaaaacacgacaagacatttcaccaa i calJac3.chr3 C 0 C 0 e mm10.chr5 49287773 3264 + 151834684 I e canFam3.chr3 3878300 1758 - 91889043 I a score=3880813.000000 s hg38.chr4_KI270790v1_alt 190407 1164 + 220246 aaaggtaaaacagatggcaagtaagcacatgaaaagatatttaatagcattactaattattgaaatgcagactaaaactacaatgagttattactacacatctattagaatggctaacataaaatcaaaaatggtgtcaagaccaaatgttggcaag--gacacagaaaaactggatcactcatacatggacagtgaaaatgtaaaatgttacattcactctggaaaacagtctggcggtgtcttaaaattccgaacatacatcacctacaaaacctagcaattgtactccagagca-tttatcccagagaaataaaaatttattttcacacaaaaacctgtacacggatgcttatagcattttga--cttgtcatagtcttaacctagaaacaacctagatgccttttaatgggtgaatggttaatgaaattgt-atatgtccaaaccatgtgatactacacagcaataaaaaggaatgaactagtgatagacacaatttagatggctttcaagggaattacacagagtg-aaaatgccagtctcaaaagattacataccacatgattccattcatataacattctcaaaatgacagaattataaaagtggagaacagattagtgggtgccaaggattaagcaaagggt-gggggcagaaagaagggcat-tcgctatagaagtgcaacacggcagatccttgtggtgatggaagtcttctgtatccttattgtatcaatgttggtatctgagttgtgatattttattatagttttgtaagatgtcaccactgcagaaaaatg---agtaaattgtacactgcatctctctgtattatttgcttataattccatgctaatctacaattatacc-caaataaaaatttaatGAAAAATGTAATAAAT--AAAATtttaaaaataccttttgagccccttctatgcactactgttttaggtgctgaatatacatgagtgaacccaatagac-aaaattggtgtctcatggagcttataatggggaacggggaaagaaacaacagagcaggcaaagggacactgagcatgtcgaatggagggaagggatggcagggcatgtaaagcaaggtgataacaaaagtcctcaagagaaagtgatgatgtttgagtaaa-atttgaaggtggtgtaaaagAGACCCAT s panTro4.chr4 21579353 1164 + 193495092 aaaggtaaaacagatggcaagtaagcacatgaaaagatatttaatagcatcagtaattattgaaatgcagactaaaactacaatgagttattactacacatctattagaatggctaacataaaatcaaaaatggtgtcaagaccaaatgttggcaag--gacacagaaaaaccggatcactcatacatggacagtgaaaatgtaaaatgttacagtcactctggaaaacagtctggcggtgtcttaaaattccaaacatacatcatctacaaaacccagcaattgtactccagagca-tttgtcccagagaaataaaaatttattttcacacaaaaacctgtacacggatgcttatagcattttga--ctcatcatagtcttaacctagaaacaacctagatgccctttaatgggtgaatggttaatgaaattgt-atatgtccaaaccatgtggtactacacagcaataaaaaggaatgaactagtgatagacacaatttagatggctctcaagggaattacacagagtg-aaaatgccagtctcaaaagattacataccacatgattccattcatataacattctcaaaatgacagaattataaaagtggagaacagattagtgggtgtcaaggattaagcaaagggt-gggggcagaaagaagggcat-tcgctataaaagtgcaacacggcagatccttgtggtgatggaagtcttctatatccttattgtatcaatgttgatatctgagttgtgatattttattatagttttgtaagatgtcaccactgcagaaaaatg---agtaaattgtacactgcatctctctgtattatttgcttataattccatgctaatctacaattatacc-caaataaaaatttaatGAAAAATGTAATAAAT--AAAatttaaaaaataccttttgagccccttctatgcactactgttttaggtgctgaatatacatgagtgaatccaatagac-aaaattggtatctcatggagcttataatggggaacggggaaagaaacaacagagcaggcaaagggacactgagcatgtcgaatggagggaagggatggcagggcatgtaaagcaaggtgaTAACAAAAGTCCTCAAGAGAAAGTGATGATGTTTGAGTAAA-ATTTGAAGGTGGTGTAAAAGAGACCCAT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21754871 1163 + 198332218 aaaggtaaaacagatggcaagtaagcacatgaaaagatatttaacagcattagtaattattgaaatgcagactaaaactacaatgagttattactacacatctattagaat-gctaacataaaatcaaaaatagtgtcaagaccaaatgttggcaag--gacacagaaaaactggatcactcatacatggacagtgaaaatgtgaaatgttatagtcactctggaaaacagtctggtggtgtcttaaaattctgaacatacatcatctacaaaacccagcaattatactcctgagca-tttatcccagagaaataaaaatttattttcacacaaaaacctgtacacggatgcttataacattttga--tttgtcatagtcttaacctagaaacaacctagatgccctttaatgggtgaatggttaaagaaattgt-atatgtccaaaccatgtgatactacacagcaataaaaaggcgtgaactagtgatagacacaatttagatggctctcaagggaattacacagagtg-aaaatgccagtctcaaaagattacataccacatgattccattcatataacattctcaaaatgacagaattataaaagtggagaacagatcagtggatgccaaggattaggcaaagggt-gggggcagaaagaagtccat-tcactataaaagtgcaacatggcagatccttgtggtgatggaagtcttctgtatccttattgtatcaatgttgatatctgagttgtgatactttattatagttttgtaagatgtcaccactgcagaaaactg---agtaaattttacattgcatctctctgtattatttgcttataattccatgctaatctacaattatacc-caaataaaaatttaatGAAAAATTTAATAAAT--AAAATtttaaaaataccttttgagccccttctatgcactactgctttaggtgctgaatatacgcgagtgaatccaacagac-aaaattggtgtctcatggagcttataatggggaatggggaaagaaacaacagaacaggcaaagggacaccgagcatgtcaaatggagggaagggatggcagggcatgtaaagcaaggtgataacaaaagtcctcatgagaaagtgatgatgtttgagtaaa-atttgaaggtggtgtaaaagagacccat i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20364195 1161 - 85365473 aaaggtaaaacagaaggcaagtaagcacatgaaaagatatttaatagcattagtaattattgaaatgtagactaaaactacaatgagttactactacacatctattagaatggctaacataaaatcaaaaatagtgtcaagaccaaatgttggcaag--gacacagaaaaactggatcactcatacatggacagtgaaaatgtaaaatgttacagtcactctggcaaacagtctggtggtgtcttaaaattctgaacatacatcatctacaaaacccagcaattgtactcccgagca-tttatcccagagaaataaaaatttattttcacacaaaaacctgtacatggatgcttatagcattttga--cttgtcatagtcttaacctagaaacaacctagatgccctttaatgggtgaatggttaaagaaattgt-atatgtccaaaccatgtgatactagacagcaataaaaaggaatgaactagcgatagacacaatttggatagctctcaagggaattacaccgagtg-aaaatgccagtctcaaaagattacataccac--gattccattcatataacattctcaaaatgacagaattataaaagtggagaacagattagtgggtgccaaggattaagcaaagggt-gggggcagaaagaagtgcat-tcgctataaaagtgcaacatggcagatccttgaggcgatggaagtcttctgtgtccttattgtatcaatgttgatatctgagttgtgatgttttattatagttttgtaagatgtcaccactgcagaaaactg---agtaaattgtacactgcatctctctgtattatttgcttataattccatgctaatctac-tttatacg-caaataaaaatttaatGAAAAATTTAATAAAT--AAAATtttaaaaataccttttgagccccttctatgcactactgttttcggtgctgaatatacacgagtgaatccaacagac-aaaattggtgtctcatggagcttataatggggaacggggaaagtaacaacagaacaggcaaagggacaatgagcatgtcgaatggagggaagggatggcagggcatgtaaagcaaggtgataacaaaagtcctcatgggaaagtgatgatgtttgagtaaa-atttgaaggtggtgtaaaagAGACCCAT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16830974 1169 + 184069350 aaaggtaaagcagatggcaagtaagcacatgaaaagatatttaacagcattagtaattattgaaatgcagactaaaactacaatgagttattactacatatctattagaatggctaaaataaaaggaaaaatagtgtcaagatcaaatgttggcaag--gacacagaaaaactggatcactcatacattgacagtgaaaatgtaaaatgttacagtcgctctggaaaacagtctggtggtgtcttaaaattctgaacatacatcagctacaaaacccagcaattgtactcctgagca-tttatcccagagaaataaaaatttgttttcacacaaaaacctgtacacggatgcttagagcattttga--cttgtcatggtcttaacctggaaacaacctagatgccctttaatgggtgaatggtcaaagaaattgt-atatgtccaaaccatgtgatactacacagcaataaaacggaatgaactagtgatagacacactttagatggatctcaagggaattacacggagtg-aaaatgcctatctcaaaagattacataccacatggttccattcatacaacattctcaaaatgacagaattacaaaagtggagaacagattagtgggtaccaaggattaagcaaagggtagggggcagaaggaagtggat-tcgctataaaagcacaacatggcagatccccgtggtgatggaagtcttctgtattcttattgtatcaatgttgatatctgagttgtgatattttattatagttttgtaagacgttgccattacagaaaactgagtagtaaattgtacactgcatctctctgtattatttgcttataattccacgctaatctacaattatccc-caaataaaaatttaatGaaaaatttaataaataaaaaattGTAAaaataccttttgagccccttctatgtgctattgttttaggtgctgaatatacacgagtgaatccaatggac-aaaattggtgtctcatggaacttacaatgggaaacggggaaagaaacaacagaataggcaaagggacactgagcatgctgaatggagggaagggatggcagagcatgtaaagcaaggtgaT-ACAAAAGTCCTCATGAGAAAGTGAGGATGTTTGAGTAAA-ATTTGAAGGTGGTGTATAAGAGAACCAT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20880794 1169 + 189454096 aaaggtaaagcagatggcaagtaagcacatgaaaagatatttaacagcattagtaattattgaaatgcagactaaaactacaatgagttattactacatatctattagaatggctaaaataaaaggaaaaatagtgtcaagatcaaatgttggcaag--gacacagaaaaactggatcactcatacattgacagtgaaaatgtaaaatgttacagtcgctctggaaaacagtctggtggtgtcttaaaattctgaacatacatcagctacaaaacccagcaattgtactcctgagca-tttatcccagagaaataaaaatttgttttcacacaaaaacctgtacacggatgcttagagcattttga--cttgtcatggtcttaacctggaaacaacctagatgccctttaatgggtgaatggtcaaagaaattgt-atatgtccaaaccatgtgatactacacagcaataaaacggaatgaactagtgatagacacactttagatggatctcaagggaattacacggagtg-aaaatgcctatctcaaaagattacataccacatggttccattcatacaacattctcaaaatgacagaattacaaaagtggagaacagattagtgggtaccaaggattaagcaaagggtagggggcagaaggaagtggat-tcgctataaaagcacaacatggcagatccccgtggtgatggaagtcttctgtattcttattgtatcaatgttgatatctgagttgtgatattttattatagttttgtaagacgttgccattacagaaaactgagtagtaaattgtacactgcatctctctgtattatttgcttataattccacgctaatctacaattatccc-caaataaaaatttaatGAAAAATTTAATAAATAAAAAATTGTAAaaataccttttgagccccttctatgtgctattgttttaggtgctgaatatacacgagtgaatccaatggac-aaaattggtgtctcatggaacttacaatgggaaacggggaaagaaacaacagaataggcaaagggacactgagcatgctgaatggagggaagggatggcagagcatgtaaagcaaggtgat-acaaaagtcctcatgagaaagtgaggatgtttgagtaaa-atttgaaggtggtgtataagagaaccat i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16471032 1168 + 178775436 AAAGGTAAAacagatggcaagtaagcacatgaaaagatatttaacagCATTAGTAATTATTGAAATGCAGACTAAAACTACAATGAGTTATTACTACgtatctattagaatggctaaaataaaaggaaaaatagtgtCAAGATCAAATGTTggcaagaaaacacagaaaaactggatcactcatacattgACAGTGAAAATGTAAAACGTTACAGTCGctctggaaaacagtctggtGGTGTCTTAAAATTCTGAACATACATCAGCTACAAAACCCAGCAATTGTACTCCtgagca-tttatcccagagaaataaaaatttgttttcacacAAAAACCCGTACACGGATGCTTAGAGCATTTTGA--CTTGTCATGGTCTTAACCTGGAAACAACCTAGATGCCCTTTAATGGG----TGGTCAAAGAAATTGT-ATATGTCCAAACCATGTGACACTACACAGCAATAAAACGGAATGAACTAGTGATAGACACACTTTAGATGGATCTCAAGGGAATTACACGGAGTG-AAAATGCCTATCTCAAAAGATTACATACCACATGATTCCATTCATAcaacattctcaaaatgacagaattacaaaagtggagaacagattagtgggtACCAAGGATTAAGCAAAGGGTAGGGGGCAGAAGGAAGTGGAT-TCGCTATAAAAGCGCAACATGGCAGATCCCTGTGGTGATGGAAGTCTTCTGTATCCTTATTGTATCAGTGTTGATATCTGagttgtgatattttattatagttttgtaAGACGTTGCCATTGCAGAAAACTGAGTAGTAAATTGTACACTgcatctctctgtattatttgcTTATAATTCCACGCTAATCTATAattatccc-caaataaaaatttaatgaaaaatgtaataaataaaaaattgtaaaaataccTTTTGAGCCCCTTCTATGTGCTACTGTTTTAGGTGCTGAATATCCATGAGTGAATCCAATGGAC-AAAATTGGTGTCTCATGGAACTTATAATGGGAAACGGGGAAAGAAACGACAGAATAGGCAAAGGGACACTGAGCATGCTGAATGGAGGGAAGGGATGGCAGGGCATGTAAAGCAAGGTGATAACAAAAGTCCTCATGAGAAAGTAGGGATGTTTGAGTAAA-ATTTGAAGGTGGTGTATAAGAGAACCAT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19954157 1168 - 48547382 aaaggtaaagcagatggcaagtaagcacatgaaaagatatttaacagcattagtacttattgaaatgcagactaaaactacaatgagttattactacatatctattagaatggctaaaataaaaggaaaaatagtgtcaagatcaaatgttggcaag--gacacagaaaaactggatcactcatacattgacagtg-aaatg-aaaatgttacggtcactctggaaaacagtctggtggtgtcttaaaattctgaacatacatcagctacaaaacccagcaattgtactcctgagca-tttatcccggagaaataaaaatttattttcacacaaaaacctgtacacggatgcttagagcattttga--cttgtcatggtcttaacctggaaacaacctagatgccctttaatgggtgaatggtcaaagaaattgt-atatgtccaaaccatgtgatactatacagcaataaaacggaatgaactagtgatagacacactttagatggatctcaagggaattacacggagtg-aaaatgcctatctcaaaagattacataccacatgattccattcatacaacattctcaaaatgacagaattacaaaagtggagaacagattagtgggtaccaaggattaagcaaagggtagggggcagaaggaagtggat-tcgctataaaagcacaacatggcagatccctgtggtgatggaagtcttctgtatccttattgtatcaatgttgatatctgaggtgtgatattttattatggtttggtaagacgttgccattgcagaaaactgagtagtaaattgtacactgcatctctctgtattatttgcttataattccacgctaatctacaattatccc-caaataaaaatttaatGAAAAATTTAATAAATAAAAAATTGTAAaaataccttttgagccccttctatgtgctactgttttaggtgctgaatacacacgagtgaatccaatggac-aaaattggtgtctcatggaacttataatgggaaacggggaaagaaatgacagaataggcaaagggacactgagcatgctgaatggagggaagggatggcagagcatgtaaagcaaggtgataacaaaagtcctcatgagaaagtgaggatgtctgagtaaa-atttgaaggtggtgtataagagaaccat i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21315195 1157 - 190850796 aaagataaaacagatg----gtaagcacatgaaaacatatttaacagcattattaattattgaaatgcagactaatactacaatgagttattacttcacatccactagaatggctaaaataaaa-caaaaatagtgtcaagaacaactgttggcaag--gacacagaaaagctggatcactcatacattgccagtgaaaatgtaaaatggtacagtcactcaggaaaacagtgtggtggcatcttaaaattctgaacatatgtcagctacaatactcagcaactgtactcctaagcattttattccagagaaataaaaatttattttcacacaaaaacttgtacatggatatttacagcattttta--cttgtcatagtcttaatctggaaacaacctggataccctttaatgggtgaatggttaaagaaattgt-gtatgtccaaaccgggcgatactacacagcaataaaaaggaatgaactattgatagacacaatttagatggatctcaagggaattagactgagtg-aaaatgccagtctcaaaagattacataccacattattccattcatataacattcttaaaatgacagaattataaaagtagagaacagattagtggatgccaaggtttaagaaaagggtagggggtggaaggaagtggat-ttgctatgaaagtgcaacatggcagatctttggggtgat-gaagtcttctgtatccttattgtatcaatgctgatacttgagttgtgatattttattatagttttgtaagatgttgccattgcagaaaac-----agtaaatcgtatactgcatctctctgtatta-ttgcttataattccatgctaatctacaattatttc-caaataataattaattgaaaaaTTTAATAAAT--AAAATtttaaaaataccttttga-cccctactatgcattactgttttaggtgctgaacatacatgagtgaatccaacagacaaaaattggtgtcacatggagcttataatggggagtagggaaagaaacaacagaatatgcaaagaggcactgagtatgccaaatggagggaagggatggcagggcatgtaaagcaaagtaataacaatagtccttatgagaaagttaggatgtttaagtaaa-gtttgaaggtggtatagaagagaacaat i calJac3.chr3 C 0 C 0 s canFam3.chr3 3880058 1121 - 91889043 aaagatcCtacagagggcaaataagcacatgagaaaattttcaacctcattagtcact-ctgacatgcaaaataaaactataatgaggcatcactgcacatctatcacaatgggtaaaattaaaaaaaaaatagcgataagaccaaaggttggcaag--gatgcagagaaactggaactttcatacattgctggtaggaatgaaaaatggtacagccatcctgaagaacagtctgatagttctttaaaattctaaaaatacatcaaccatataacccagcaattgcactcctgagca-tttatcccaaggaaatgaaaatatatatccagacaaaaaccttgacataaattgttacagcataaaaatgtttataata-tcccaaacaggaaacaacctcgatgcccttcaagaggtgaatggctaaacaaaccatgacacttctattctatggaatactacacagcaatataa-----tgaactactgatagacacaatttagttgaatctcaagggaattatgctgagtgaaaaaagcctacctcaaaaggttacataccacatgattccatttatgtaacattcctgaaataacaaaattatagaa--agaggccagcttagtgggtaccaatgattaagaaaattataagggacacaaggaagtagatgtagctataatagtgcaac----------------gtgatggaaatgttccctattctgacagtatggatgtcaatatcctacttgtgatattctactatggttttgcaagatgttaccactgggagaaactg-----gatactttacttcg-agatctctgcataattt-cttacaattgcatatgaatctacagttatctcgaaaataaaagtttacctcaaaattaaataaat-aaaaattaaaaaaaaatGT----agcacctactatgccttactatttaagggtcttaatatacataagtaaagcaaatagat-aaaaccagtgattcacagaacttataacgggg---------agaaagagtaaaatgtctaagaata----gagtacaccagatggagggaggtgacagcagtggaggt-aattgaggtgatcagaaaactcttcact-----gaggtgacatttaagcaaagatttgaaggaggtgtaagcatgagccaa i canFam3.chr3 I 1758 C 0 e mm10.chr5 49287773 3264 + 151834684 I a score=1267488.000000 s hg38.chr4_KI270790v1_alt 191571 365 + 220246 GTAGATACCTGGAATGTGCACATAGGTGCTTTCTCTGTATATGTAACTTTCTGTAGACCCTGGACAGTCAGCTAATAATCCACAAATCAATCTGTTTGAAAAACCTTCTCAAAATCAGCCCTCTGT-AGAAGGTTCATTTTTCACATTGAAGCCTAGAGCACCAGCATGATCAATA--------------TTTTCTCTAGGGAAAGTAATTACTAATCACCAATTG-TGTTGGATGTGTGCAAGGATCCCACTGCCTA--TATTTGTGTATTgttggggagtatgcagggaaaataaagttgtttaatgctatccttgggaaaaca-caaaacataattaggaagagaactatacaaatatcacagag-tattagaaaacaaaaa s panTro4.chr4 21580517 364 + 193495092 GTAGATACCTGGAATGTGCACATAGGTGCTTTCTCTGTATATGTAACTTTCTGTAGACCCTGGACAGTCAGCTAATAATCCACAAATCAATCTGTT-GAAAAACCTTCTCAAAATCAGCCCTCTGT-AGAAGGTTCATTTTTCACATTGAAGCCTAGAGCACCAGCATGATCAATA--------------TTTTCTCTAGGGAAAGTAATTACTAATCACCAATTG-TGTTGGATGTGTGCAAGGATCCCACTGCCTG--TATCTATGTATTgttggggagtatgcagggaaaataatgttgtttaatgctatccttgggaaaaca-caaaacataattaggaagagaactatacaaatatcacagag-tatcagaaaacaaaaa i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21756034 362 + 198332218 gtagatacctggAATGTGAACATAGGTGCTTTCTCTGTATATGTAACTTTCTGTAGACCCTGGACAGTCAGCTAATATTCCACAAATCAATCTGTTTGAAAAACCTTCTCAAAATCAGCCCTCTGT-AGAAGGTTCATTTTTCACATTGAAGCCTAGACCACCAGTATGATCAATA--------------TTTTCTCTAGGGAAAGTAATTACTAATCACCAATTA-TGTTGGATGTGTGCAAGGATCCCACTGCCTG--TATCTATGTATTGTTGGGGAGTATGCAGGGAAAATAA---TGTTTAATGCTATCCTTGGGAAAACA-CAAAACGTAATTAGGAAGAGAACTATACAAATATCACAGAG-TATTAGAAAACAAAAA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20365356 379 - 85365473 GTAGATACCTGGAATGGGCACGTAGGTGCTTTCTCTGTATATGTAACTTTCTGTAGACCCTTGACAGCCAGCTAATATTCCACAAATCAATCTGTTTGAAAAACCTTCTCAAAATCAGCCCTCTGT-AGAAGGTTCATTTTTCACACTGAAGCCTAGACCACCAGTATGATCTCTAGGGAAAGTAATTACTTTTCTCTAGGGAAAGTAATTACTAATCACCAATTG-TGTTGGATGTGTGCAAGGATCCCACTGCCTG--TATCTATGTGTTgttggggagtatgcagggaaaataatgttgtttaatgctatccttgggaaaaca-caaaacataattaggaagagaactatacaaatatcacagag-tattagaaaacaaaaa i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16832143 365 + 184069350 GTAGATACCTGGAAAGTGCACATAGGTGCTTTCTCTGTATATGTAACTTTCTGTAGACCCTGGACAGTCACCTAATATTCTACAAATCAATCTGTTTGAAAAACCTCCTCAAAATCAGCCCTCTGT-AGAAGGTTTATTTTTAACATCGAAGCCTAGACCACCAGCATGATCAATA--------------TTTTCTCTAGGGAAAGCAATTACTAATCACCAGTTG-TGTTGGATGTGTGCAAGGATCCCACTGCCTG--TATCTATGTATCgttggggagtgtgcagggaaaataatgttgtttaatgccatccttgggaaaaca-caaaacataattaggaagagaactatacaaatatcacagag-tattagaagacaaaaa i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20881963 365 + 189454096 gtagatacctggAAAGTGCACATAGGTGCTTTCTCTGTATATGTAACTTTCTGTAGACCCTGGACAGTCACCTAATATTCTACAAATCAATCTGTTTGAAAAACCTCCTCAAAATCAGCCCTCTGT-AGAAGGTTTATTTTTAACATCGAAGCCTAGACCACCAGCATGATCAATA--------------TTTTCTCTAGGGAAAGCAATTACTAATCACCAATTG-TGTTGGATGTGTGCAAGGATCCCACTGCCTG--TATCTATGTATCgttggggagtgtgcagggaaaataatgttgtttaatgccatccttgggaaaaca-caaaacataattaggaagagaactacacaaatatcacagag-tattagaagacaaaaa i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16472200 365 + 178775436 GTAGATACCTGGAAAGTGCACATAGGTGCTTTCTCCGTATATGTAACTTTCTGTAGACCCTGGACAGTCACCTAATATTCTACAAATCAATCTGTTTGAGAAACCTTCTCAAAATCAGCCCTCTGT-AGAAGgtttatttttcacattgaaGCCTAGACCACCAGCATGATCAATA--------------TTTTCTCTAGGGAAAGCAATTACTAATCACCAATTG-TGTTGGATGTGTGCAAGGATCCCACTGCCTG--TATCTATGTATTGTTGGAGACTGTGCAGGGAAAATAATATTGTTTAATGCCATCCTCGGGAAAACA-CAAAACATAATTAGGAAGAGAACTATACAAATATCACAGAG-TATTAGaagacaaaaa i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19955325 365 - 48547382 atagatacctggAAAGTGCACATAGGTGCTTTCTCTGTATTTGTAACTTTCTGTAGACCCTGGACAGTCACCTAATATTCTACAAACCAATCTGTTTGAAAAACCTTCTCAAAATCAGCCCTCTGT-AGAAGGTTTATTTTTCACATCGAAGCCTAGACCACCAGCATGATCAATA--------------TTTTCTCTAGGGAAATCAATTACTAATCACCAATTG-TGTTGGACGTGTGCAAGGATCCCACTGCCTG--TATCTATGTATTgttggggagtgtccagggaaaataatgtagtttaatgccatccttgggaaaaca-caaaacataattaggaagagaactatacaaatatcacagag-tattagaagacaaaaa i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21316352 365 - 190850796 gtaaatacctggAATGTTCACACAGGTACTTTCTCTGTATATGCAACTTTCTATAGACTCTGGACAATCAGATAATACTCCACAAATCAATCTGTTTGA-AAACCTTCTTAAAATCAGCACTCTTT-AGAGGATTCATTTTTCACATCGAAGTCTAGAGCACCAGTATTATCAATA--------------TTTTCTCCAGGGAAAGCAATTACTAATCACCAATTG-TGTTGGATGTGTGCAAGGATCCCACTGCCTG--TATCTATGTATTGTTGGGGAGTGTGTAGGGAAAATAATGTTGTTTAATGCTATCCTTGGGAAAACA-CAAAATATAATTAGGAAGAGAACTATACAAATATCACAGAGTTATTAGAAAACAAAAA i calJac3.chr3 C 0 C 0 s mm10.chr5 49291037 308 + 151834684 GTGGCTATCTAGAATGTACATATAGGACCTTTATGGGCATTAACAATTTTATATTATCC--GGACAGTCAGTCAATAACATTCGCATAATTCTGTGCAAAAA---CTCTCAGAATAGA----CTGT-GGGA-ACTGACTTTTCACTTTGCAGCACAGATCTTCAGCATAACCAGGA--------------CTTCCTCTAGACATAGCAATAATATATTGCCTATAG-----------GAGAAAGAA---------------------------TGGGAAAGTATGTAAGAGAAATCA----------TCCAATTCACAGGAAAACAGAAAAAAATAATTAGGAAGATAAAT-TTTAAATA--AAAGAG-AATTAGAAAATGAAAG i mm10.chr5 I 3264 I 41 s canFam3.chr3 3881179 336 - 91889043 gtggatacc--gagagTACACGGA-----------TGTGTGTG-ATCTCTCTGTAGCTTCTGGACAGTCTGTCAATATTCCTCCATTCATTCTGTTGGGGAAA--TTCCTGAAATCAGCCCTCTGTGAAAAAGCTCAATTTTGGTGCGGAAGCCCAGAGCTCCAACCTGATCAATC--------------TTTTCTCTAGGGAACGCAATCACAAATTGCTGATTTTTATTGG----------GGAATCCGTCGCCTGTATATCTATTTATTGTTGGGAGGTGTGTCGGAGAAATATTG----TTAATGCTATCCTTAGGAAAACA---AAACAAAATTAAGACAATAAATATA-AAGTGCTACAGAG-TATTCGAAAATAAAAA i canFam3.chr3 C 0 C 0 a score=405882.000000 s hg38.chr4_KI270790v1_alt 191936 116 + 220246 -----tgttcttttaatgatcagctaatttggattaGATATAACTACCACTAGCAGCAATATCAAGAATCAAGAGTTGCATGTTCAATAATAACAGATGTCTTTAATATTTCAGAGATGTT s panTro4.chr4 21580881 116 + 193495092 -----tgttcttttaatgatcagctaatttggattaGATATAACTACCACTAGCAGCAATATCAAGAATCAAGAGTTGCATGTTCAATAATAACAGATGTCTTTAATATTTCAGAGATGTT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21756396 116 + 198332218 -----TGTTCTTTTAATGGTCAGCTAATTTGGATTAGATATAACTACCACTAGCAGCAATATCAAGAATCAAGAGTTGCATGTCCAATAATAACAGATGTCTTTAATATTTCAGAGATGTT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20365735 116 - 85365473 -----tgttcttttaatgatcagctaatttggattaGATATAACTACCACTAGCAGCAATATCAAGAATCAAGAGTTGCATGTTCAGTAATAACAGATGTCTTTAATATTTCAGAGATGTT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16832508 116 + 184069350 -----tgttcttttaatgatcagataatttggattaGATATAACTACCACTAGCAGCAATATCAAGAATCAAGAGTTGCATGTTCAATAATAACAGATGTCTTTAATATTTCAGAGATGTT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20882328 116 + 189454096 -----tgttcttttaatgatcagataatttggattaGATATAACTACCACTAGCAGCAATATCAAGAATCAAGAGTTGCATGTTCAATAATAACAGATGTCTTTAATATTTCAGAGATGTT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16472565 116 + 178775436 -----tattcttttaatgatCAGATAATTTGGATTAGATATAACTACCACTAGCAGCAATATCAAGAATCAAGAGTTGCATGTTCAATAATAACAGATGTCTTTAATATTTCAGAGATGTT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19955690 116 - 48547382 -----tattcttttaatgatcagataatttggattaGATATAACTACCACTAGCAGCAATATCAAGAATCAAGAGTTGCATGTTCAATAATAACAGATGTCTTTAATATTTCAGAGATGTT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21316717 116 - 190850796 -----TGTTCTTTTAATGATCAGCTAATGTGAATTAGGTATAACTACTACTAGCAGTAACATCAAGAATTAAGGGTGGCATGTTCAATAATAACAGATGCCTTTAATATTTCAGATATGTT i calJac3.chr3 C 0 C 0 s canFam3.chr3 3881515 118 - 91889043 AGAAAAATACTCTTAATTACCAGCTAATTT-AACCAG-TATAACCATTACCTCCAACAATATCAATGATCAA-AGTTCCCTGTTCAAAAATAGCAAGTGTCCTCAGTGCCTCAGAAATGCT i canFam3.chr3 C 0 C 0 e mm10.chr5 49291345 41 + 151834684 I a score=6595237.000000 s hg38.chr4_KI270790v1_alt 192052 1935 + 220246 -----TGAGCAAAGCCACTGTCATTTACAAAGAAATATAAGTG--------AACAGCTCATAAGGGCTTAAAGGTTTTCGAGATG---AAACCAGT------TTTGGCACATGGTAAGGGGACTACTAAAATTCCTAACAGTAAAGTTACAGAAAAATTTAGTTTAAATGCAAA---------CCAGCTCATCATGTGATAAGAACA---------AAAGGTTCCTTGATGAGTGATGATTCCACAAGCAACTACTGGCCAT-GTGAAATAAGTTACAGAAGGACAAAGAAGTGTAGACTCATTTCAAGATATATTTCTCCTAATTGCATTTTGGAGGAAATGTTTTTCAGAGCAGC-TCTTTTAGAGAAGGCCAAAGTCCAAATATATG-AAATCTTAAATGCACTTAGATGATCCTCATTGCTTCTTAGAATGGAAAAATAAATGTGACTGATTGATTAAGGGAAGAAAGTTGGCTTCTCTTC--------------AAGGAATGACGAGTGTAGTGATTCCCAAGAAGACTCTTCTCACAGTGGAGTTTTCTCTCAAAGACTGCTCCTCTCAAAACATCGTGGTGTGTTCTGTGTATCTCAGTGGGAACAGACATTGTTATGCCTTTCAAATTGTCACAAGTTGCAAAATTAAACATGTGCAGCATAAAAATAGCACACCATGGGGCTGCAAAGAGAAGCAGAGCAGAGCCTTGCGGCAAAGTCACAGGTTTTGAAAGTGGGTCTTGATAAAATATCAGACTTGCTACTGTCCATTAGAGAGGAACTCCCCAGTGCCAGGTCCATTATTATTCCAGAA-----GCTGTTCCCCTACTTCACTGAGTAAAGAGCCTGCCATGACACTACCAATGTTTGCATCAACTTTGGTTATAGCTCTGTGAATACAAAGCAAGTCAAAATCAACCCTACTGGCATAGGAAGTCCTCCTTTAGTGTGGCTAGGTCTAAATTGACCACAAACCATACGATAAACATTTTAGGTAATGTCTAAATGATGCCATTGTTGAGGCTTTCTGCCATAGTCTAATG---TCACACAATGAAGACTAAATCATTGATAGATATGAGGATTCTGTATCACCTTGGTAT----T-GAGTGTGACAATGTGAACAAATATTTACATGTAAATAGATTCACAGAAGTATCTACT-AAATACAAATTATGAG------------------------------------CTTTAAAAAG----TAAAACAAAA------------------------------------------------------CATCCTGGAG-------------------------------------------------GGCCGAAGAAGTGAAATTTTT---------------------------------------------TCTAGAAGATGA--GA-TTGAACTATT---------------------------------CTTTGT----------TTGGTTGTG-------TTTTT----------------------------------AAG---GAGAGCC----------------------------ACTGTTTGTTATTCATG----------------AGTGTTCAGAGGTAAG-GAAAAG-TGTTTATGACATATGTGTAGATTTTGGACAAATAGTCCATTGGAAATGTGCACCAGGTAGAGGTAA-GGCTCCATTGATGAGACCCCACCCACCAAAAACTCTGTCTGAAGTCCTCATTGTTGTTGTTACAGGAGATGGGAGCAGATGTGATTAGCTG--AGGGAGAGCC----CTGAGAGTCAGAGACAGATGTTTACATCATACTTTAAAAAAAATAAAAATACACTGGAGAG-----TCCTGTCCAATGGAGACATGACTGGCATCATGGGCTTGGAATTTGGATTCTGTGTCAGCATCCAGGACTTCAAAAAAGGAAAGGTTGAGGGGTCAGTATGGTTAGGGGAGCTAAGTTTCCAGTCATAG---------------------------------ATTTATACCTAGATTATAAGAAAAAAGGATGA-------------------------------GACGTGTCCTCAAGCCCAATATTCCATAAAATTAGGCTGACAT---TATCCTGAAacacacacat-----acacacacacacacacacacacacacacacacacacGGATAATGTCAGCTAATA--TACATAT-ACAAAATCAACTTATGAGAAATTCTCTTTTTC--CCACTCTTTGGTGGGTCATTTAGAATAAGGAA-CTGGGGTTCTAATTTCACACTGGAACATAATATCATATTGTTTACCTTT-------------------ACTCAGATGCA----------TTTT-CTCA-GCTATTAAACAGTCATGCAGTCTCCT s panTro4.chr4 21580997 1940 + 193495092 -----TGAGCAAAGCCACTGTCATTTACAAAGAAATATAAGTG--------AACAGCTCATAAGGGCTTAAAGGTTTTCGAGATG---AAACCAGT------TTTGGCACATGGTAAGAGGACTACTAAAATTCGTAACAGTAAAGTTACAGAAAAATTTAGTTTAAATGTAAA---------CCGGCTCATCATGTGATAAGAACA---------AAAGGTTCCTTGATGAGTGATGATTCCACAAGCAACTACTGGCCAT-GTGAAATAAGTTACAGAAGGACAAAGAAGTGTAGGCTCATTTCAAGATATATTTCTCCTAATTGCATTTTGGAGGAAATGTTTTTCAGAGCAGC-TCTTTTAGAGAAGGCCAAAGTCCAAATATATG-AAATCTTAAATGCACTTAGATGATCCTCATTGCTTCTTAGAATGGAAAAATAAATGTGACTGATTGATTAAGGGAAGAAAGTTGGCTTCTCTTC--------------AAGGAATGAGGAGCGTAGTGATTCCCAAGAAGACTCTTCTCACAATGGAGTTTTCTCTCAAAGACTGCTCCTCTCAAAACATCGTGGTGTGTTCTGTGTATCTCAGTGGGAACAGACATTGTTATGCCTTTCAAATTGTCACAAGTTGCAAAATTAAACATGTGCAGCACAAAAATAGCACACCATGGGGCTGCAAAGAGAAGCAGAGCAGAGCCTTGCGGCAAAGTCACAGGTTTTGAAAGTGGGTCTTGATAAAATATCAGACTTGCTACTGTCCATTAGAGAAGAACTCCCCAGTGCCAGGTCCATTATTATTCCAGAA-----GCTGTTCCCCTACTTCACTGAGTAAAGAGCCTGCCATGACACTACCAATGTTTGCATCAACTTTGGTTATAGCTCTGTGAATACAAAGCAAGTCAAAATCAACCCTACTGGCATAAGAAGTCCTCCTTTAGTGTGGCTAGGTCTAAATCGACCACAAACCATACGATAAACATTTTAGGTAATGCCTAAATGATGCCATTGTTGAGGCTTTCTGCCATAGTCTAATG---TCACACAATGAAGACTAAATCATTGATAGATATGAGGATTCTGTATCACCTTGGTAT----T-GAGTGTGACAATGTGAACAAATATTTACATGTAAATAGATTCACAGAAGTATCTACT-AAATACAAATTATGAG------------------------------------CTTTAAAAAG----TAAAACAAAA------------------------------------------------------TATCCTGGAG-------------------------------------------------GGCCGAAGAAGGGAAATTTTT---------------------------------------------TCTAGAAGATGA--GA-TTGAACTATT---------------------------------CTTTGT----------TTGGTTGTG-------TTTTT----------------------------------AAG---GAGAGCC----------------------------ACTGTTTGTTATTCATG----------------AGTGTTCAGAGGTAAG-GAAAAG-TGTTTATGACATATGTGTAGATTTTGGACAAATAGTCCATTGGAAATGTGCACCAGGTAGAGCTAA-GGCTCCATTGATGAGACCCCACCCTCTTAAAACTCTGTCTGAAGTCCTCATTGTTGTTGTTACAGGAGATGGGAGCAGATGTGTTTAGCTG--AGGGAGAGCC----CTGAGAGTCAGAGACAGATGTTTACATCATACTTTAAAGAAAATAAAAATACACTGGAGAG-----TCCTGTCCAATGGAGACATGACTGGCATCATGGGCTTGGAATTTGGATTCTGTGTCAGCATCCAGGACTTCAAAAAAGGAAAGGTTGAGGGGTCAGTACGGTTAGGGGAGCTAAGTTTCCAGTCATAG---------------------------------ATGTATACCTAGATTATAAGAAAAAAGGATGA-------------------------------GACGTGTCCTCAAGCCCAATATTCCATAAAATTAGGCTGACAT---TATCCTGAAacacacacatcacacacacacacacacacacacacacacacacacacacacGGATAATGTCAGCTAATA--TACATAT-ACAAAATCAACTTATGAGAAATTCTCTTTTTC--CCACTCTTTGGTGGGTCATTTAGAATAAGGAA-CTGGGGTTCTAATTTCACACTGGAACATAATATCATATTGTTTACCTTT-------------------ACTCAGATGCA----------TTTT-CTCA-GCTATTCAACAGTCATGCAGTCTCCT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21756512 1925 + 198332218 -----TGAGCAAAGCCACTGTCATTTACAAAGAAATATAAGTG--------AACAGCTCATAAGGGCTTAAAGGTTTTCTAGATG---AAACCAGT------TTTGGCACATGGTAAGGGGACTACTAAAATTCCCAACAGTAAAGTTACAGAAAAATTTAGTTTAAATGCAAA---------CAGGCTCATCATGTGATAAGAACA---------AAAGGTTCCTTGATGAGTGATGATTCCACAAGCAACTACTGGCCAT-GTGAAATAAGTTACAGAAGGACATAGAAGCGTAGGCTTATTTCAAGATATATTTCTCCTAATTGCATTTTGGAGGAAATGTTTTTCAGAGCAGC-TCTTTCAGAGAAGGCCAAAGTCCAAATATGTG-AAATCTTAAATGCACTTAGATGATCCTCATTGCTTCTTAGAATGGAAAAATAAATGTGACTGACTGATTAAGGGAAGAAGGTTGGCTTCCCTTC--------------AAGGAATGAGGAGTGTAGTGATTCCCAAGAAGACTCTTCTCACAATGGAGTTTTCTCACAAAGACTGCTCTTCTCAAAACATCTTGGTGTATTCTGCGTATCTCAGTGGGAACAGACATTGTTATGCCTTTCAAATTGTCACAAGTTGCAAAATTAAACATGTGCAGCATAAAAATAGCACACCATGGGGCTGCAAAGAGAAGCAGAGCAGAGCCTTGCGGCAAAGTCACAGGTTTTGAAAGTGGGTCTTGATAAAATATCAGACTCACTACTGTCCATTAGAGAGGAACTCCCCAGTGCCAGGTCCATTATTATTCCAGAA-----GCTGTTCCCCTACTTCAATGAGTAAAGAGCCTGCCATGACACTACCAATGTTTGCGTCAACTTTGGTTATAGCTCTGTGAATACAAAGCAAGTCAAAATCAACCCTACTGGCATAAGAAGTCCTCCTTTAGTGTGGCTAGGTCTAAGTTGACCACAAACCATACGATAAACATTTTAGGTAATGCCTAAATGATGCCATTGTTGAGGGTTTCTGCCATAGTCTAATG---TCACACAATGAAGACTAAACCATTGATAGATATGAGGATTCTGTATCACCTTGGTAT----T-GAGTGCGACAATGTGAACAAATATTTACATGTAAACAGATTCACAGAAGTATCTACT-AAATACAGATTATGAG------------------------------------CTTTAAAAAG----TAAAACAAAA------------------------------------------------------CATCCTGGAG-------------------------------------------------GGCCGAAGAAGTGAAATTTTT---------------------------------------------TCTAGAAGATGA--GA-TTGAACTATT---------------------------------CTTTGT----------TTGGTTGTG-------TTTTT----------------------------------AAG---GAGAGCC----------------------------ACGGTTTGTTATTCATG----------------AGTGTTCAGAGGTAAG-GAAAAG-TGTTTACGACATACATGTAGATTTTGGACAAATAGTCCATTGGAAATGTGCACTAGGTACAGCTGA-GGCTCCATTGATGAGACCCCACCCACCTAAAACTCTGTCTGAAGTCCTCATTATTGTTGTTACAGGAGATGGGAGCAGATGTGTTTAGCTG--AGGGACAGCC----CTGAGGGTCAGAGACAGACGCTTATATCATACTTAAAAGAAAATAAAAATACACTGGAGAG-----TCCTGTCCAATGGAGACACGACTGCCATCATGGGCTTGGAATTTGGATTCTGTGTCAGCATCCAGGACTTCAAAAAAGGAAAGGTTGAGGGGTCAGTAGGGTTAGGGGAGCTGAGTTTCCAGTAATAG---------------------------------ATTTATACCTAGATTATAAGAAAAAAGGATGA-------------------------------GACGTGTCCTGAAGCCCAATATTCCATAAAATTAGGCTGACAT---TATCCTGAAacacacacat---------------acatacatacacacacacacacacacGGATAATGTCAGCTAATA--TACATAT-ACAAAATCAAATTATGAGAAATCCTCTTTTTC--CCACTCTTTGGTGGGCCATTTAGAATAAGGAA-CTGGGGTTCCAATTTCACACTGGAACATAATATCAGATTGTTTACCTTT-------------------ACTCAGATGCA----------TTTT-CTCA-GCTATTAAACAGTCATGCAGTCTCCT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20365851 1913 - 85365473 -----TGAGCAAAGCCACTGTCATTTACAAAGAAATATAAGTG--------AACAGCTCATAAGGGCTTAAAGGTTTTCTAGATG---AAATCAGT------TTTGGCACATGGTAAGGGGACTACTAAAATTCCTAACAGTAAAGTTACAGAAAAATTTAGTTTAAATGCAAA---------CCGGCTCATCATGTGATAAGAACA---------AAAGGTTCCTTGATGAGTGATGATTCCACAAGCAACTACTGGCCAT-GTGAAATAAGTTACAGAAGGACATAGAAGTGTAGGCTCATTTCAAGATATATTTCTCCTAATTGCCTTTTGGAGGAAATGTTTTTCAGAGCAGC-TCTTTTAGAGAAGGCCAAAGTCCAAATATGTG-AAATCTTAAATGCACTTAGATGATCCTCATTGCTTCTTAGAATGGAAAAATAAATGTGACTGATTGATTAAGGGAAGAAGGTTGGCTTCCCTTC--------------AACGAATGAGGAGTGTAGTGATTCCCAAGAAGACTCTTCTCACAATGGAGTTTGCTCGCAAAGACTGCTCCTCTCAAAACATCTTGGTGTATTCTCTATATCTCAGTGGGAACAGACATTGTTATGCCTTTCAAATTGTCACAAGTTGCAAAATTAAACATGTGCAGCATAAAAATAGCACACCATGGGGCTGCAAAGAGAAGCAGAGCAGAGCCTTGCGGCAAAGTCACAGGTTTTAAAAGTGGGTCTTGATAAAATATCAGACTCGCTACTGTCCATTAGAGAGGAACTCCCCAGTGCCAGGTCCATTATTATTCCAGAA-----GCTGTTCCCCTACTTCAAGGAGTAAAGAGCCTGCCATGACACTACCAATGTTTGGATCGACTTTGGTTATAGCTCCGTGAATACAAAGCAAGTCACAATCAACCCTACTGGCATAAGAAGTCCTCCTTTAGTGTGGCTAGGTCTAAATCGATCACAAACCATACGATAAACATTTTAGGTAATGCCTAAATGATGCCATTGTTGAGGCTTTCTGCCATAGTCTAATG---TCATACAATGAAGACTAAACCATTGATAGATATGAGGATTCTGTATCACCTTGGTAT----T-GAGTGTGACAATGTGAACAAATATTTACATGTAAATAGAGTTACAGAAGTATCTACT-AAATACAGATTATGAG------------------------------------CTTTAAAAAG----TAAAACAAAA------------------------------------------------------CATCTTGGAG-------------------------------------------------GGCCGAAGAAGTGAAATTTTT---------------------------------------------TCTAGAAGATGA--GA-TTGAACTATT---------------------------------C----T----------TTGGTTGCG-------TTTTT----------------------------------AAG---GAAAGCC----------------------------ACTGTTTGTTATTCATG----------------AGTGTTCAGAGGTAAG-GAAAAG-TGTTTATGACACACGTGTAGATTTTGGACAAATAGTCCATTGGAAATGTGCACCAGGTAGAGGTGA-GGCTCCACTGATGAGACCCCATCCACCTAAAACTCTGTCTGAAGTCCTCATTATTGTTGTTACAGAAGATGGGAGCAGATGTGTTTAGCTG--AGGGAGAGCC----CTGAGAGTCAGAGACGGATGCTTACATCATACTTAAAAGAAAATAAAAATACAC----------------------TGGAGACACAACTGGCATCATGGACTTGGAATTTGGATTCTGTGTCAGCATCCAGGACTTCAAAAA-----------AGGGGTCAGTAGGGTTCGGGGAGCTGAGTTTCCAGTAATAG---------------------------------ATTTATACCTAGATTATAAGAAAAAAGGATAA-------------------------------GACGTGTCCTCAAGCCCAATATTCCATAAAATTAGGCTGACAT---TATCCTGAAacacacacac-----acacacacacacacacacacacacacacacacacacGGATAATGTCAGCTAATA--TACATAT-ACAAAATCAACTTATGAGAAATTCTCTTTTTC--CCACTCTTTGGTGGGCCATTTAGAATAAGGAA-CTGGGGTTCTAATTTCACACTGGAACATAATATCAAATTGTTTACCTTT-------------------ACTCAGATGCATTCAGATGCCTTTT-CTCA-GCTATTAAACAGTCATGCAGTCTCCT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16832624 1925 + 184069350 -----TGAGCAAAGCCACTGTCGTTTACAAAGAAATATAAGTG--------AACAGCTCATAAGGGCTTAAAGGTCTTCTGGATA---AAACCAGT------TTTGGCACATGGTAAGGGGACTACTAAAATTCCTAACAGTAAAGTTACAGAAAAATTTAGTTTAAATGCAAA---------CCGGCTCATCATGTGATAAGAACA---------AAAGGTTCCTTGAAGAGTGATGATTCCACAAGCAACTACTGGCCAC-GTGAAGTAAGTTACAGAAGGACATAGAAGTGTAGGCTTATTTCAAGATATATTTCTCCTAATTGCATTTTGGAGGAAATGTTTTTCAGAGCAGC-TCTTTTAGAGAAGGCCAAAGTCCAAATATATG-AAATCTTAAATGCACTTAGATGATCCTCATTGCTCCTTAGAATGGAAAAATAAATGTGACTGATTGATTAAGGGAAGAAGGTTGGCTTCCCTTC--------------AAGGAATGAGGAGTGTAGTGATTCCCAAGAAGACTCTTTTCACAATGGAGTTTTCTCGCAAAGACTGCTCCTCTCAAAACATCTTGGTGTATTCTGTGTATCTCAGTGGGAATAGACATTGTTATACCTTTCAAATTGTCACAAGTTGCAAAATTAAACATGTGCAGCGTAAAAATAGCACACCATGGGGCTACAAAGAGAGGCAGAACAGAGCCTAGCAGCAAAGTCACAGGTTTTGAAAGTGGGTCTTGATAAAATATGAGACTCGCCACTGTCCATTAGAGAGGAACTCCCCAATTCCAGGTCCCTTATTATTCCAGAA-----GCTGTTCCCCTACTTCAATGAGTAAAGAGTCTGCCACGACACTACCAATGTTTGCATCAACTTTGGTTATAGCTCTATGAATACAAAGCAAGTCAAAATCAACCCTACTGGCATGAGAAGTCCTCCTTTAGTGTGATTAGGTCTAAATTGACCACAAACCACACGATAAAGATTTTAGGTAATGCCTAAATGATCCCGTTGTTGAGGCTTTCTGCCATAGTCTAATG---TCACACAATGAAGACTAAACCATTGAAAGATATGAGGATTCTGTATCACCTTGGGAT----T-GAGTGTGACAATGTGAACGAATATTTACATGTAAATAGATTCACAGAAGTATCTACT-AAATACAGATTATGAG------------------------------------CTTTAAAAAG----TAAAACAAAA------------------------------------------------------CATCCTGGAG-------------------------------------------------GGCCGAAGAAGTGAATTTTTT---------------------------------------------TCTAGAAGATGA--GA-TTGAACAATT---------------------------------CTTTGT----------TTGGCTATG-------TTTTT----------------------------------AAG---GAGAGCC----------------------------ACTGTTTGTTATTCATG----------------AGTGTTCAGAGGTAAG-GAAAAG-TGTTTATGACATACGTGTAGATTTTGGACAAACAGTCCATTGGAAATGTGCACCAGGTAGAGCTGA-GGCTCCATTGATGAGACCCCACCCACCTAAAACTCTGTCTGAAGTCCTCATTATTGTTGTGACAGGAGATGGAAGCAGATGTGTTTAGCTG--AGGGAGAGCC----CTGAGTGTCAGAGACAGATGCTTACATCACACTTAAATGAAAATAAAAATATATTGGAGAA-----TCCTGTCCAATGGAGACACGACTGGCATCATGGGCTCGGAATTGGGTTTCTGTGTCAGCATCCAGGACTTCAAAAAAGGAAAGGTTGAGGGGTCAGTTGGGTTAGGGGAGCTGAGTTTCCAGTAATAG---------------------------------ATTTATACCTAGATTATAAGAGAAAAGGATGA-------------------------------GATGTGTCGTCAAGTCGAATATTCCATAAAATTAGGCTGACAT---TATCCTGAA-----------------acacacacacacacacacacacacacacacacacGGATAATGTCAGCTAATATGTATATAT-ACAAAATCAACTTATGAGAAATTATCTTTTTC--CCACTCTTTGGTGGACCATTTAGAATAAGGAA-CTGGGGTTCTAATTTCACACTGGAACATAATATCAAATTGTTTACCTTC-------------------ACTCAGATGCA----------TGTT-CTCA-GCTATTAAACCGTCATGCAGTCTCCT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20882444 1936 + 189454096 -----TGAGCAAAGCCACTGTCGTTTACAAAGAAATATAAGTG--------AACAGCTCATAAGGGCTTAAAGGTCTTCTGGATA---AAACCAGT------TTTGGCACATGGTAAGGGGACTACTAAAATTCCTAACAGTAAAGTTACAGAAAAATTTAGTTTAAATGCAAA---------CCGGCTCATCATGTGATAAGAACA---------AAAGGTTCCTTGAAGAGTGATGATTCCACAAGCAACTACTGGCCAC-GTGAAGTAAGTTACAGAAGGACATAGAAGTGTAGGCTTATTTCAAGATATATTTCTCCTAATTGCATTTTGGAGGAAATGTTTTTCAGAGCAGC-TCTTTTAGAGAAGGCCAAAGTCCAAATATATG-AAATCTTAAATGCACTTAGATGATCCTCATTGCTCCTTAGAATGGAAAAATAAATGTGACTGATTGATTAAGGGAAGAAGGTTGGCTTCCCTTC--------------AAGGAATGAGGAGTGTAGTGATTCCCAAGAAGACTCTTTTCACAATGGAGTTTTCTCGCAAAGACTGCTCCTCTCAAAACATCTTGGTGTATTCTGTGTATCTCAGTGGGAATAGACATTGTTATGCCTTTCAAATTGTCACAAGTTGCAAAATTAAACATGTGCAGCGTAAAAATAGCACACCATGGGGCTACAAAGAGAAGCAGAACAGAGCCTAGCAGCAAAGTCACAGGTTTTGAAAGTGGGTCTTGATAAAATATGAGACTCGCCACTGTCCATTAGAGAGGAACTCCCCAATTCCAGGTCCCTTATTATTCCAGAA-----GCTGTTCCCCTACTTCAATGAGTAAAGAGTCTGCCACGACACTACCAATGTTTGCATCAACTTTGGTTATAGCTCTATGAATACAAAGCAAGTCAAAATCAACCCTACTGGCATGAGAAGTCCTCCTTTAGTGTGATTAGGTCTAAATTGACCACAAACCACACGATAAAGATTTTAGGTAATGCCTAAATGATGCCGCTGTTGAGGCTTTCTGCCATAGTCTAATG---TCACACAATGAAGACTAAACCATTGAAAGATATGAGGATTCTGTATCACCTTGGGAT----T-GAGTGTGACAATGTGAACGAATATTTACATGTAAATAGATTAACAGAAGTATCTACT-AAATACAGATTATGAG------------------------------------CTTTAAAAAG----TAAAACAAAA------------------------------------------------------CATCCTGGAG-------------------------------------------------GGCCGAAGAAGTGAATTTTTT---------------------------------------------TCTAGAAGATGA--GA-TTGAACAATT---------------------------------CTTTGT----------TTGGCTATG-------TTTTT----------------------------------AAG---GAGAGCC----------------------------ACTGTTTGTTATTCATG----------------AGTGTTCAGAGGTAAG-GAAAAG-TGTTTATGACATACGTGTAGATTTTGGACAAACAGTCCATTGGAAATGTGCACCAGGTAGAGCTGA-GGCTCCATTGATGAGACCCCACCCACCTAAAACTCTGTCTGAAGTCCTCATTATTGTTGTGACAGGAGATGGAAGCAGATGTGTTTAGCTG--AGGGAGAGCC----CTGAGTGTCAGAGACAGATGCTTACATCACACTTAAATGAAAATAAAAATATATTGGAGAA-----TCCTGTCCAATGGAGACACGACTGGCATCATGGGCTCGGAATTGGGTTTCTGTGTCAGCATCCAGGACTTCAAAAAAGGAAAGGTTGAGGGGTCAGTAGGGTTAGGGGAGCTGAGTTTCCAGTAATAG---------------------------------ATTTATACCTAGATTATAAGAGAAAAGGATGA-------------------------------GATGTGTCGTCAAGTCGAATATTCCATAAAATTAGGCTGACAT---TATCCTGAAacacacacac-----acacacacacacacacacacacacacacacacacacGGATAATGTCAGCTAATAT-TATATAT-AAAAAATCAACTTATGAGAAATTATCTTTTTC--CCACTCTTTGGTGGACCATTTAGAATAAGGAA-CTGGGGTTCTAATTTCACACTGGAACATAATATCAAATTGTTTACCTTC-------------------ACTCAGATGCA----------TGTT-CTCA-GCTATTAAACTGTCATGCAGTCTCCT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16472681 1913 + 178775436 -----TGAGCAAAGCCACTgtcatttacaaagaaatataagTG--------AACAGCTCATAAGGGCTTAAAGGTTTTCTAGATA---AAACCAGT------TTTGGCACATGGTAAGGGGACTACTAAAATTCCTAACAGTaaagttacagaaaaatttaGTTTAAATGCAAA---------GCGGCTCATCATGTGATAAGAACA---------AAAGGTTCCTTGAAGAGTGATGATTCCACAAGCAACTACTGGCCAC-GTGAAATAAGTTACAGAAGGACATAGAAGTGTAGGCTCATTTCAAGATATATTTCTCCTAATTGCATTTTGGAGGAAATGTTTTTCAGAGCAGC-TCTTTTAGAGAAGGCCAAAGTCCAAATATATG-AAATCTTAAATGCACTTAGATGATCCTCATTGCTCcttagaatggaaaaataaatgtgactGATTGATTAAGGGAAGAAGGTTGGCTTCCCTTC--------------AAGGAATGAGGAGTGTAGTGATTCCCAAGAAGACTCTTTTCACAATGGAGTTTTCTCGCAAAGACTGCTCCTCTCAAAACATCTTGGTGTATTCTGTGTATCTCAGTGGGAATAGACATTGTTATGCCTTTCAAATTGTCACAAGTTGCAAAATTAAACATGTGCAGCATAAAAATAGCACACCGTGGGGCTACAAAGAGAAGCAGAACAGAGCCTAGCGGCAAAGTCACAGGTTTTGAAAGTGGGTCTTGATAAAATATGAGACTGGCCACTGTCCATTAGAGAGGAACTCCCCAATGCCCGGTCCCTTATTGTTCCAGAA-----GCTGTTCCCCTACTTCAATGAGTAAAGAGTCTGCCACGACACTACCAACGTTTGCATCAACTTTGGTGATAGTTCTATGAATACGAAGCAAGTCAAAATCAACCCTACTGGCATGAGAAGTCCTCCTTTAGTGTGGTTAGGTCTAAATTGACCACAAACCATATGATAAAGATTTTAGGTAATGCCTAAATAATGCCGCTGTTGAGGCTTTCTGCCATAGTCTAATG---TCACACAATGAAGACTAAACCATTGAAAGATATGAGGATTCTGTATCACCTTGGGAT----T-GAGTGTGACAATGTGAACgaatatttacatgtaaatagATTCACAGAAGTATCTACT-AAATACAGATTATgag------------------------------------ctttaaaaag----taaaacaaaa------------------------------------------------------catccTGGAG-------------------------------------------------GGCCGAAGAagtgaatttttt---------------------------------------------tctagaagatGA--GA-TTGAACAATT---------------------------------CTTTGT----------TTGGCTATG-------TTTTT----------------------------------AAG---GAGAGCC----------------------------ACTGTTTGTTATTCATG----------------AGTGTTCA---------GAAAAG-TGTTTATGACATACTTGTAGATTTTGGACAAATAGTCCATTGGAAATGTGCACCAGGTAGAGCTGA-GGCTCCATTGATGAGACCCCACCCACGTAAAACTCTGTCTGAAGTCCTCATTATTGTTGTGACAGGAGATGGAAGCAGATGTGTTTAGCTG--AGGGAGAGCC----CTGAGTGTCAGAGACAGATGCTTACATCAcacttaaatgaaaataaaaatatattggagAA-----TCCTGTCCAATGGAGACACGACTGGCATCATGGGCTCGGAATTTGGTTTCTGCGTCAGCATCCAGGACTTCAAAAAAGGAAAGGTTGAGGGGTCAGTAGGGTTAGGGGAGTTGAGTTTCCAGTAATAGAGTT-----------------------------AGTTATACCTAGATGATAAGAAAAAAGGATGA-------------------------------GACATGTCATCAAGTCCAATATTCCATAAAATTAGGCTGACAT---TAtcctgaa-------------------------acacacacatacacacacacacacacggataatgtcagctaatatatatatat-acaaaatcaacttatGAGAAATTATCTTTTTC--CCACTCTTTGGTGGACCATTTAGAATAAGGAA-CTGGGGTTCTAATTTCACACTGGAACATAATATCAAATTGTTTACCTTC-------------------ACTCAGATGCA----------TGTT-CTCA-GCTATTAGACCGTCATGCAGTCTCCT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19955806 1933 - 48547382 -----TGAGCAAAGCCACTGTCATTTGCAAAGAAATATAAGTG--------AACAGCTCATAAGGGCTTAAAGGTTTTCTAGATA---AAACCAGT------TTTGGCACATGGTAAGGGGACTGCTAAAATTCCTAACAGTAAAGTTACAGAAAAATTTAGTTTAAATGCAAA---------CCGGCTCATCATGTGATAAGAACA---------AAAGGTTCCTTGAAGAGTGATGATTCCACAAGCAACTACTGGCCAC-GTGAAATAAGTTACAGAAGGACATAGAAGTGTAGGCTCATTTCAAGATATATTTCTCCTAATTGCATTTTGGAGGAAATGTTTTTCAGAGCAGC-TCTTTTAGAGAAGGCCAAAGTCCAAATATATG-AAATCTTAAATGCACTTAGATGATCCTCATTGCTCCTTAGAATGGAAAAATAAATGTGACTGATTGATTAAGGGAAGAAGGTTGGCTTCCCTTC--------------AAGGAATGAGGAGTGTAGTGATTCCCAAGAAGACTCTTTTCACAATGGAGTTTTCTCGCAAAGACTGCTCCTCTCAAAACATCTTGGTGTATTCTGCGTATCTCAGTGGGAATAGACATTGTTACGCCTTTCAAATTGTCACAAGTTGCAAAATTAAACATGTGCAGCATAAAAATAGCACACCGTGGGGCTACAAAGAGAAGCAGAACAGAGCCTAGCGGCAAAGTCACAGGTTTTGAAAGTGGGTCTTGATAAAATATGAGACTGGCCACTGTCCATTAGAGAGGAACTCCCCAATGCCAGGTCCCTTATTGTTCCAGAA-----GCTGTTCCCCTACTTTAATGAGTAAAGAGTCTGCCACGACACTACCAATGTTTGCATCAACTTTGGTGATAGCTCTATGAATACGAAGCAAGTCAAAATCAACCCTACTGGCATGAGAAGTCCTCCTTTAGTGTGGCTAGGTCTAAATCGACCACAAACCATACGATAAAGATTTTAGGTAATGCCTAAATGATGCCGCTGTTGAGGCTTTCTCCCATAGTCTAATG---TCACACAATGAAGACTAAACCATTGAAAGATATGAGGATTCTGTATCACCTTGGGAT----T-GAGTGTGACAATGTGAATGAATATTTACATATAAATAGATTCACAGAAGTATCTACT-AAATACAGATTATGAG------------------------------------CTTTAAAAAG----TAAAACAAAA------------------------------------------------------CATCCTGGAG-------------------------------------------------GGCCGAAGAAGTGAATTTTTT---------------------------------------------TCTAGAAGATGA--GA-TTGAACAATT---------------------------------CTTTGT----------TTGGCTATG-------TTTTT----------------------------------AAG---GAGAGCC----------------------------ACTGTTTGTTATTCATG----------------AGTGTTCA---------GACAAG-TATTTATGACATACTTGTAGATTTTGGACAAATAGTCCATTGGAAATGTGCACCAGGTAGAGCTGA-GGCTCCATTGATGAGACCCCACCCACGTAAAACTCTGTCTGAAGTCCTCATAATTGTTGTGACAGGAGATGGAAGCAGATGTGTTTAGCTG--AGGGAGAGCC----CTGAGTGTCAGAGACAGATGCTTACACCACACTTAAATGAAAATAAAAATATATTGGAGAA-----TCCTGTCCAATGGAGACACGACTGGCATCATGGGCTCAGAATTTGGTTTCTGCGTCAGCATCCAGGACTTCAAAAAAGGAAAGGTTGAGGGGTCAGTAGGGTTAGGGGAGCTGAGTTTCCAGTAATAGAGTT-----------------------------AGTTATACCTAGATTATAAGAAAAAAGGATGA-------------------------------GACATGTTGTCAAATCCAATATTCCATAAAATTAGACTGACAT---TATCCTGAAacacacacat-----acacacacacacacacacacacacacacacacacacGGATAATGTCAGCTAATATATATATAT-ACAAAATCAACTTAAGAGAAAGTATCTTTTTC--CCACACTTTGGTGGACCATTTATAATAAGGAA-CTGGGGTTCTAATTTCACACTGGAACATAATATCAAATTGTTTACCTTC-------------------ACTCAGATGCA----------TTTT-CTCA-GCTATTAGACCGTCATGCAGTCTCCT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21316833 1933 - 190850796 -----TGAGCAAAGCCACAATCATTT--AAAGAAATATAAGTG--------AACAACTCATAAGGGCTTAAAAGCTTTCTAAATG----AACCAAT------TTGGGCACATGGTAAGGGGACTACTAAAATTACTAACAGTAAAGTTACAGAAAATTTTAATTTAAATGCAAA----------CAGCTCATCATGTGATAAGAACA---------AAAGGTTCTGTGATGAGCGATGATTCCACAAGCAACTACTGGTCAT-GTGAAATAAGTTACAGAAGGACACAGAAGTGTAGGCTCATTTCAAGATATATTTCTCCTAATTGCATTTTGGAGGAAATGTTTTTCAGAGCAGT-TCTTTAAGAGAAGGCCAAAGTCCAAGTATAGG-AAATCTTAAATGCACTTAGATGATCCTCCTTGCTTCCTAGAATGGAAAAATAAATATGACTGATTGATTAAGGGAAGAGGATTGGCTTCTCTTC--------------AAGGAATAAAAAGTGTAGTGATTCCCAAGAAGACTCTTCCCACGATGGAGTTTTCTTGCAAAGACTGCTCCTCT----------TGGTGTACTCTGTGTATCTCAGTGGGAATAGACATTGTTATGTCTTTCAAATTGTCACAAGTTGCAAAATTAAACATGTGCAGCATAAAAATAGCACACCATGGGGTTGCAAAGAGAAGCAGAGCAGAG-CTTGCCGCAAAGTCACAGGTTTTGAAAGTGGGTCTTGATAAAATATCTGCCTAGCTAGTGTCCATTAGAGAGGAATTCCCCAATGCCAAGTCCATTATTATTCCAGAA-----GCTGTTTCCCTACTTCAGTGAGCAAAGAGTCTGCCATGACATTACCAACATTTGCACCAACTTTGGTTAAAGCTCTGTGAATACAAAGCAAGTCAAAATCAACCCTCCTGGCATGAGAAGACCTCCTTTAGTGTACCTAGGTCTGAATCAAACACAAAGCATATGATACATATTTTAGGTAATACTTAAACAATGCAATTATTGAGGTTTCCTGTCATAATCTAATA---TCACACAATGGAGACTAAACCACTGAGAGCTACGAGGATTCTGTATCACCTTGGTATTAAAT-GAATATGATAATGTG----AATATTTACATGTAAATAGATTGATAGACGTATCTACT-AAATACAAATTATGAG------------------------------------CTTTAAAAAG----TAAAACAAAA------------------------------------------------------CATCCTAGAG-------------------------------------------------GACCAAAGAAGTGAAATTTTT---------------------------------------------TCTGGAAGATGA--GA-CTGAGCTCTT---------------------------------CTTTGT----------TTGGTTTTC-------TTTTT----------------------------------AAG---GAGAACC----------------------------ACTGTTTGTTATTCATG----------------AGTGTTCAGAGGTAAG-GGAAAGTTGTCTATGACATATGTGTATATTTTGGACAAATGGTCCATTGGAAATGTGCACCATGTAGAGCTGA-GGCTTCACTGATGAGAGCTCACTCACCTAAAACTCTGTCTGAAGGCCTCA---TTGTTGTTACGGGAGATGAGAGAAGATGTGTTTAGCTG--AGGGAAAGCC----CTGAGGGTCAGAGACAGATGCATACATCATACTTAAAAGAAAATAAAAATACATTGGAGAG-----TCCTGT-CAATGGAGATATGATCAGCATCATGGGCTTGGAATTTGGTTTCTGTGTCAGCATCCATGACTTCAAAAATGGAAAGACTGAGGGGTGAGTAGGGTTAGGGG-GCTGAGTTTCCAGTAATAGATTTATATCCACATTATAAGAAAAAAGGAATAGATTTATACCCAGATTATGAGAAAAGAGGATGA-------------------------------GACGTGTTTTCAAGTCCAATATTCCATAAAATTAGGCTGACAT---TGTCCTAAAGCGCGCGcac---------------agacacacacacacacacacacacac------------------------------aAAATCAACTTACGAGAGATTCTTTTTTCCCTCCACTCTTTGGTGGGCCAGTTAGAATAGGAAG-CTGGGGTTCTAATTTCACACTGAAACATAATATCAAATTGTTTACCTTCACTCAAACTGTTTACCTTTACTCAGATGAG----------TTTT-CTCA-GCTATTAAACAGTCATGCAGTCTCCT i calJac3.chr3 C 0 C 0 s mm10.chr5 49291386 2079 + 151834684 -----TAAACAAAACCACT-------------AAATACAA-----------------TAATA------TAAA--------------------------------------ATTGTAA---GACTACTAACATTCCTCATACTAGAGCTAAAAGGACATTTAACTTAGAATCAAACCCCATCCACCAGGTCACCATGTGATAAGAATGGTAGAAGTTGAAAGCTCCT---------ATGTT-------GTAACTCCTGATCTTAGTAAACTTAGGGGTGAGGGATTTTTAAAGTCTGGGTATTAATAAAGATATTTTTCTTTTAATTGTATTT--AAAGGATTTTTTTTCTTAGTCTA-TCTGTCAAAGAAGG-CAAAATCCAAGTATAAACAAATCATAAATGCA-TGATTTGCCCCTTATTCATTTTTAGAATGG--AAATCAATGT--CTG-------------------TTGGCTTCTCTTCaaaaaaaaaaaaaaaaaaaaGGAAGAGCCCAGGAGATTCCAAGAAGATTCTTGTCACAGTGTAGTGTTCCTTGCAAATCAACTCCTCTCAATTCATCTTGGAGCAATCTGTGTATCTCAGTGGGTGTAGATATTGTTATGCTTTTCAAATTGTCACAAGTCACAAAAATAAACATGTGCCATGTAGAAATAGCACACCATGGAGCTGCAAAGAGAAACAGAACACAGCCTGGCGGCAAAGTCACAGGCTCTGAAAGTGGGTCTTGATAGAATAGCAAAGGAGCTGCTGTCCATTAGAGAAGAATGTCCC-GTGCCAGCTCCATTATTATTCCGGAAACATCACTAGTCACCTACTTCAGTGAATAAAGAGCAAGCCAACATACTGTGACTGCTCATATCCACTTCAGTGACAGTTCTGTGAGTACAAAGCAAGTCAAAATCACACCTTCCAGCAGGAAGGGTC--TCTTTGGTGTGCCTAGGTCAAAATGTTCTAAAAGCT-----------ATTCTGGGTAGGGCCTAAAGCACATA-----TGAACATTTCTGCCATAATTTAATG---TCATCTAAAGAATACTAAATCTTTGA-AGAGATGAGGACTCTGTCACACCTTAGCAT----TAAAACGAAATTACATAGACAAATATTCACATATAAATAGATTCACAGAAGTACCTGGTAAAATTCAGCTTACAAAGACACAAGCAAAACAAACAAGGAACCTCCAGCCCACCTCCACAAAATGCCTAAAACTAAAgtggtattttgaatatgattggcccatgggaagtgatactattaggaggtgtggcctgttggaggaagtcactgtaggggtggagtccaaccagtgatttcttggttgcttttggaccaagatgtcaaattctcagcttttcccgtgccatgcctgcctggatgctgccaagtttccagccttgatgataatgga-ctgaaccgctgaacttgtaagccagccccaattaaatgtttgcctttgtaagcattgccttggttgtggtgtagctttgtagcaatggaaaccctaactaaaacaGGGAGAAAGAAG---GAAAACCTTTCTACAAAATGAGGTTAAAGCATATTTTTATATTCTGTTCAGGAGAGGGAAACCACTCAAGTGTTCCCAGGAAAG-TCAAAG-GACTAATGGGAT-TGTACATGTGTTGGAAAGGCAGACAGCTGAAAATGAACATC---TAGAACAAA-GCCTC-----ATGGGACTCCATTGCCTCACAGTCAAGTCTAATGACTTCGTT-CTACTGCTATACGAACTAGGACAAAACATGTTTTGCAGACAGAGAGAGCCAAGTTTGAAAAAAAAAAAAAGCTGCATACATTGTACTTACAAAAACCGAAAAGGATGCTAAAGGGACACATCCAGCCCAAAGGG--------TGACATTGGGGGCCTGAAGAAGAATCTCATTGTCAGTCTGAGACATTTCA------GAAGGCTGGAGGAAT------------GGGGGGTGGGTTCTTTTCCATGA---------------------------------GATCACCTCTAGATGTTAAGAAAGAGGGTCCG-------------------------------AATGTCTCCCTAAGTACAGTACTTCATGAAACAAGCCTAAAAT--GTGTCCTG-----------------------------------------------------------------TTGAAA--TATATATCAATTATTTTCCTCATGAGAATTTTTTTTTTTT-----------GCTGGGTAATACAGAAGAAGGAATTTGGGGCTACACTTTATCACTTGAATTATGCATCAAACTG--TACCTTA-------------------GCCCAGTTCCA----------TTTT-ATTATGTGATTAAGAACCTATTTGGTCTCAA i mm10.chr5 I 41 C 0 s canFam3.chr3 3881633 1844 - 91889043 TGTGTTGTCCATCACCACGGTCATTAACGGAGAAATGTGAGTAAACTTTACAACAGCTCACAGAGGCTCCAAGATTTTACAGATGAGCAAACAACTTAGCACTTTAGCACATGGTACAGTGGCTACTAACGTTTCTTGCAGAAAAGTTACAGCTGAATTTAATTTAAAGACAAA---------CTGTCACACTATGTGGTACAAACC---------AAAGGTCCT---ATGAGAGATGATTCCACAAGCAACCAGTAGTCTT----------GTTACTGAGAAACATGAACCTGCAGGCTCATTTTAAGATGTATTTTCCCTCATTGCATTTTGGATGAATTTTTTTTTTCTACTCCATCTTTTTGACAAG-------TCCAAGCGAAAC-AAGCCTTAAACATACCTGGACCACCTT--TTGCCCCTTAG--------AATAAGCAGGAATGA-TGATTAAGGGAAGATGGTTGGCTTTCCTTC--------------AAGGAAGAGAGAACTCAGTGATTGCTG--------TTTTGCTATGTGGAGCCTTCCCCCAAATTCTGCTCCTCTCAATAGATCTTGGTGTATTCTGTGTGTCTCAGTGGGAAAAGACATTGTTATGCTTTTCAAATTGTCACAAGTTGCAAAATTAAACATGTGCAGCTTAAAAATAGCTCACCATGGGGCTGCAGAGAGAAGCAGAGCAGAGCCTTGCGGCAAA-TCACAGGTTTTGAAAGTGGGTCTTGATAAAATATCCGACTAGCTAGCGTCCATTAGAGAGGAATATCCCAATGCCAGGTCCATTATTATTCCAGAAACATCACTCTTCACCTACTTCAATAAATAAGGAGCATGCCAACACACT-----CTTTTGCATCAAGTTTGGAAACAGCTTTGTGAATACAAAGCAAGTCAAAATCCAACTCTCTGGCATGAGAAGTCCCTCTCTCGTGTGCCTAGGTCTAAAGCAACC-CAAAACATCTAATGCGCATTCTAGATAATACCTAGATAATGCAATT-TTCAAGTGTTCTATTGTAACTTAATGGTCTCATGCAATGAGACCAAAACTATTGA----TACGAGAATTGTGTATCA-------------T---------CAATACATACAAATATTTGTATATGAACAGATACA-------------T-CAATATAAATTATGAGAGT---------------------------------CTTTTAAAAA------------------------------------------------------------------------CTGGAG-------------------------------------------------AGCTGAAGAAGTGGTGTTGT----------------------------------------------TCCAGAAAATGA--AATTTTAGCTATT-----------------------------------TTGT----------TTGGTTTTGGCTT---GTTTT----------------------------------AAGAGAGAGAGTC----------------------------ACAGTTTTTCCAACATT----------------AGTGTTCAGAGATAAGCAAAAAG-TGTCTATGACACAAGCACATATTTTAGGGAAACGGTCCATTGGAAATATGTGCTACCTCGAGCTGAGGGCTCCTTCAGTGGGGTTCCACCTACCTGGAGCCCTATGTAAAAAGCTTATTATTGCTGT---GGGAAATGAGAACAGATGCATTTTGTTG--ATGGACAGCC----CCAAGAGTCAGAGTCAGATAGATGCGTAGTACTTAAAAGAAAATAAAA-TATATCGAAGAG-----TCCTA-CAAGCAGAGATACAGCTGAGATCGGGGGTGTAGAAATGAG-CTCTGTGTCAGCATGTGGCACTTTGAAGACAGTAGACC--AAGGGCCACCAGAAGGAAAGCTGCCGCCTTCTTAGGCACAG---------------------------------ATTTATGCCCCGATTATTAAAAAAagagagggggggagggagaaagagagagagagagaCTCTGGTGTGTTCCAAGGCCCATTCTTCCACAAAATGGGGCTGAAAACTGCATCCTGAAAG---------------------------------------------------------------AATT--TACATTA-GCTTATTTTCCTTGCAATTTATTATTTTTTGC---CACTTTCTAATGAGGCATATATAGTAAGGAA-CTGGCATTCTACATTAGCACTGGATTTAAATCTAGAATTATTT-------------------------ACTCAAATTCA----------TTTTACTCA-GCTATGAAGCATCCTTGCAATCTCCC i canFam3.chr3 C 0 I 120 a score=3062785.000000 s hg38.chr4_KI270790v1_alt 193987 913 + 220246 GCCTGAC-----------------------------------------------------AAAACAC---------------ATGTAGTTATAGGAAGTATTAAAATACTACCCTACAATTATATAACCATTTTAAAGTGTTAATATATAAAC--------------------------------------------------------------------------TTTTT----------------TTCT-------TTATTGAGATCACTGGAGCTCATCCAC-TTAATTGTATTTACACTCTTACCCATTTTttctcaaagtacaatgtttggcctatttgcatcagaaccacctggaatgcctgtttaaaatgcagaattcttaggccccgcctccaatatatag-acagaatttctaagtatggggTGAAGAGTCTTACAGATTTGATATCTCCTGAATTCTCA-AAAACACAGACTTTTGATAATCAAAGCGACATAAGCCAAATACCATCTTGGAATGAGAA-GTCAAAGAACAATCAAAGAGCAAGCTGAAGATGACA-AAATTATGGCTCTAT-AAACTCCCAATAACCCACCAGATATTTCTGCCTAAAGCCACCTGCAG--ACCACTGAGAGGCTGGGATGTGGTCTTGGTAATGCATTCCCAGCCTTCC--ATTTCAAAACAAATCACAAGTGAGTCAAGGAAGCCTCATTTTCAGTT-ATATCAAAGGCAATCAATAGGCAGCTTTAAAACAATGAGGTTGCTCATTTGGCTTGAACAGAAGTCATCAACCG-------CAAGCAATCCTGTGGTGTCCATTGGAACCTAATGGACTCACACAGATTTGGTAAACTTTTTACAATATTTTACATTGCCTTTTTACAATATTTTA-TAGATTAGCCAGTTAACTAATATTTAAAAACAATTAGGCCACAT-ATGTGATTTAAACTTTCGAATTCAGCATGCTATTTTCTCCCCTTCCTTTATTA-ATTT-TTCTGCAGATTAGTATTTTTTA----AATTTTATTACAT------AT--ACTATTAGACTAATATAAA-TATGAGTAAGCTGAACTCTAAC--AAAAATATT---- s panTro4.chr4 21582937 913 + 193495092 GCCTGAC-----------------------------------------------------AAAACAC---------------ATGTAGTTATAGGAAGTATTAAAATACTATCCTACAATTATATAACCATTTTAAAGTGTTAATATATAAAC--------------------------------------------------------------------------TTTTT----------------TTCT-------TTATTGAGATCACTGGAGCTCATCCAC-TTAATTGTATTTACACTCCTACCCATTTTttctcaaagtacaatgtttggcctatttgcatcagaaccacctggaatgcctgtttaaaatgcagaattcttaggccccgcctccaatatatag-acagaatttctaagtatggggTGAAGAGTCTTACAGATTTGATATCTCCTGAGTTCTCA-AAAACACAGACTTTTGATAATCAAAGCGACATAAGCCAAATACCATCTTGGAATGAGAA-GTCAAAGAACAACCAAAGAGCAAGCTGAAGATGACA-AAATTATGGCTCTAT-AAACTCCCAATAACCCACCAGATATTTCTGCCTAAAGCCACCTGCAG--ACCACTGAGAGGCTGGGATGTGGTCTTGGTAATGCATTCCCAGCCTTCC--ATTTCAAAACAAATCACAAGTGAGTCAAGGAAGCCTCATTTTCAGTT-ATATCAAAGGCAATCAATAGGCAGCTTTAAAACAATGAGGTTGCTCATTTGGCTTGAACAGAAGTCATCAACCG-------CAAGCAATCCTGTGGTGTCCATTGGAACCTAATGGACTCACACAGATTCGGTAAACTTTTTACAATATTTTACATTGCCTTTTTACAATATTTTA-TAGATTAGCCAGTTAACTAATATTTAAAAACAATTAGGCCACAT-ATGTGATTTAAACTTTCGAATTCAGCATGCTATTTTCTCCCCTTCCTTTATTA-ATTT-TTCTGCAGATTAGTATTTTTTA----AATTTTATTACAT------AT--ACTATTAGACTAATATAAA-TATGAGTAAGCTGACTCTTAAC--AAAAATACT---- i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21758437 905 + 198332218 GCCTG------------------------------------------------------------AC---------------ATTTAGTTATAGGAAGTATTAAAATAGTATCCTACAATTATATAACCATTTTAAAGTGTTAATATATAAAC---------------------------------------------------------------------------TTTT----------------TTCT-------TTATTGAGATCCCTGGAGCTCATCCAC-TTAATTGTATTTACACTCCTACCCATTTTttctcaaagtacaatgtttggccaatttgcatcagaaccacctggaatccctgtttaaaatgcagaattcttaggccccgcctccaatatatag-acagaatttctgagtacgaggTGAAGAGTCTTATAGATTTGATATCTCCTGACTTCTCA-AAAACACAGACTTTTGATAATCAAAGTGACATAAGCCAAATATCATCTTGGAATGACAA-GTCAAAGAAAAGCCAAAGAGCAAGCTGAAGATGACA-AAATTATGGCTCTAT-AAAGTCCCAATAACCCACCAGATATTTCTGCCTAAAGCCACCTGCAG--ACCACTGAGAGGCTGGGATGTGGTCTTGGTAATGCATTCCCAGCCTTCC--ATTTCAAAACAAACCACAAGTGAGTCAAGGAAGCCTCATTTTCGGTT-ATATCAAAGACAATCAATAGGCAGCTTTAAAACAATGAGGTTGCTCATTTGGCTTAAACAGAAATCATCAACCG-------CAAGCAATCCTGTGGTGTCCATTGGAACCTAATGGACTCACACAGATTCGGTAAACTTTTTACAATATTTTACATTGCCTTTTTACAATATTTTA-TAGATTAGCCAGTTAACAAATATTTAAAAACAATTAGGCCACAT-ATGTGATTTAAACTTTCGAATTCAGCATGCTATTTTCTCCCCTTCCTTTATTA-ATTT-TTCTGCAGATTAGTATTTTTTA----AATTTTATTACAT------AT--ACTATTAGACTAATATAAA-TATGAGTAAGCTGAACTCTAAC--AAAAATATT---- i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20367764 914 - 85365473 GCCTGAC-----------------------------------------------------AAAACAC---------------ATGTAGTTACAGGAAGTATTAAAATAGTATCCTACAATTATATAACCATTTTAAAGTGTTAATATATAAAC--------------------------------------------------------------------------TTTTT----------------TTCT-------TTATTGAGATCCCTGGAGCTTATCCAC-CTAATTGTATTTACACTCCTACCCATTTTttctcaaagtac---gtttggcttatttgcatcagaaccacctggaatgcctgtttaaaatgcagaattcttgggccccgcctccaatatatag-acagaatttctgagtatggggTGAAGAGTCTTACAGATTTGATATCTCCTGAGTTCTCA-AAAACACAGACTTTTGATAATCAAAGTGACATAAGCCAAATACCATCTTGGAATGAGAA-GTCAAAGAAAAGCCAAACAGCAAGCTGAAGATGACG-AAATTATGGCTCTAT-AAAGTCCCAATAACCCACCAGATATTTCTGCCTAAAGCCACCTGCAGACACCACTGAGAGGCTGGGATGTGGTCTTGGTAATGCATTCCCAGCCTTCC--ATTTCAAAACAAATCACAAGTGAGTCAAGGAAGCCTCATTTTCAGTT-ATATCAAAGGCAATCAATAGGCAGCTTTAAAACAACGAGGTTGCTCATTTGGCTTGAACAAAAGTCATCAACCG-------CAAGCAATCCTGTGGTGTCCATTGGAACCTAATGGACTCACACAGGTTTGCTAAACTTTTTACAATATTTTAGGTTGCCTTTTTACAATATTTTA-TAGATTAGCCAGGTAACTAATATTTTTAAAAAATTAGGCCACAT-ATGTGATTTAAACCTTCGAATTCAGCATGCTATTTTCTCTCCTTCCTTTATTA-ATTT-TTCTGCAGATTAGTATTTTTTA----AATTATATTACAT------AT--ACTATTAGACTAATATAAA-TATGAGTAAGCTGAACTCTAACAAAAAAATACT---- i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16834549 914 + 184069350 GCCTGAC-----------------------------------------------------AAAACAC---------------ATGTAGTTACAGGAAGTATTAAAATAGTATCCTACAAGTATATAACCATTTTAAAGTGTTAGTATATCAAC---------------------------------------------------------------------------TTTT----------------TTCT-------TTATTGAGATCCCTGGAGCTTATCTAC-TTAATTGTATTTACACTCCTACCCATTTTttctccaagtacaacgtttggcctatttgcatcagaaccacctcgaatgcctgtttaaaacgcagaattcttgggccccgcctccaatatatag-acagaatttctgagtatggggTGAAGAGTCTTACAAGTCTGATATCTCCCGAGTTCTC--AAAACACAGACTTTTGATAATCAAGGCGACATAAGCCAAATACCACCTT-GAATGAGAATGTCAAAGAAAAGCCAAAGAGCAAGCTGAAGATGACA-AAATTATGGCTCTATAAAAGTCCCAATAACCCACCAGACATTTCTGCCTAAAGCCACCTGCAG--ACCACTGAGCGGCTGGGATGTGGTCTTGGTAATGCATTCCCAGCCTTCCGAATTTCAAAACAAATCACAAGTGAGTCAAGGAAGCCTCATTTTCAGTT-ATATCAAAGGCAATCAATAGGCAGCTTTAAAACAATGAGGTTGCTCATTTGGCTCGAACAAAAGTCATCAACCG-------CAAGCAATCCTGTGGTGTCCATTGGAATCTAATGGATTCACACAGATTTGGTAAACTTTTTACAATATTTTATATTGCCTTTTTACAATATTTTG-TAGATTCGCCAGTTACCTAATGTTTAAAAACAATTAGGCCACAT-AGGTGATTTAAACTTTCGAATTCAGCATGCTA-TTTCTCCCCTTCCTTTATTA-ATTT-TTCTGCAGATTAGTATTTGTTA----AATTATGTTACAT------AT--ACTACTAGACTAATATAAA-TATGAGTAAGCTGAACTCTAAC-AAAAAATATT---- i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20884380 914 + 189454096 GCCTGAC-----------------------------------------------------AAAACAC---------------ATGTAGTTACAGGAAGTATTAAAATAGTATCCTACAAGTATATAACCATTTTAAAGTGTTAGTATATCAAC---------------------------------------------------------------------------TTTT----------------TTCT-------TTATTGAGATCCCTGGAGCTTATCCAC-TTAATTGTATTTACACTCCTACCCATTTTTTCTCCAAGTACAACGTTTGGCCTATTtgcatcagaaccacctggaatgcctgtttaaaacgcagaattcttgggccccgcctccaATATATAG-ACAGAATTTCTGAGTATGGGGTGAAGAGTCTTACAAGTCTGATATCTCCCGAGTTCTC--AAAACACAGACTTTTGATAATCAAGGCGACATAAGCCAAATACCACCTTGGAATGAGAATGTCAAAGAAAAGCCAAAGAGCAAGCTGAAGATGACA-AAATTATGGCTCTATAAAAGTCCCAATAACCCACCAGACATTTCTGCCTAAAGCCACCTGCAG--ACCACTGAGCGGCTGGGATGTGGTCTTGGTAATGCATTCCCAGCCTTCC--ATTTCAAAACAAATCACAAGTGAGTCAAGGAAGCCTCATTTTCAGTT-ATATCAAAGGCAATCAATAGGCAGCTTTAAAACAATGAGGTTGCTCATTTGGCTCGAACAAAAGTCATCAACCG-------CAAGCAATCCTGTGGTGTCCATTGGAATCTAATGGACTCACACAGATTTGGTAAACTTTTTACAATATTTTATATTGCCTTTTTACAATATTTTG-TAGATTCGCCAGTTACCTAATGTTTAAAAACAATTAGGCCACAT-AGGTGATTTAAACTTTCGAATTCAGCATGCTATTTTCTCCCCTTCCTTTATTA-ATTT-TTCTGCAGATTAGTATTTGTTA----AATTATGTTACAT------AT--ACTACTAGACTAATATAAA-TATGAGTAAGCTGAACTCTAAC-AAAAAATATT---- i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16474594 913 + 178775436 GCCTGAC-----------------------------------------------------AAAACAC---------------ATGTAGTTACAGGAAGTATTAAAATAGTATCCTACAAGTatataaccattttaaagtgttagtatatcaac--------------------------------------------------------------------------ttttt----------------ttct-------ttattgagatcCCTGGAGCTTATCCAC-TTAATTGTATTTACACTCCTACCCATTTTTTCTCAAAGTACAACGTTTGGCCTATTTGCATCAGAACCACCTGGAAGGCCTGTTTAAAACGCAGAATTCTTGGGCCCCGCCTCCAATATATAG-ACAGAATTTCTGAGTATGGGGTGAAGAGTCTTACAAGTCTGATATCTCCCGAGTTCTC--AAAACACAGACTTTTGATAATCAAGGCGACATAAGCCAAATACCACCTTGGAATGAGAA-GTCAAAGAAAAGCCAAAAAGCAAGCTGAAGATGACA-AAATTATGGCTCTAT-AAAGTCCCAATAACCCACGAGACATTTCTGCCTAAAGCCACCTGCAG--ACCACTGAGCGGCTGGGATGTGGTCTTGGTAATGCATTCCCAGCcttcc--atttcaaaacaaatcacaaGTGAGTCAAGGAAGCCTCATTTTCAGTT-ATATCAAAGGCAATCAATAGGCAGCTTTAAAACAATGAGGTTGCTCATTTGGCTCGAACAGAAGTCATCAACCG-------CAAGCAATCCTGTGGTGTCCATTGGAACCTAATGGACTCACACAGATTTGGTAAactttttacaatattttatgttgcctttttacaatatttta-tagaTTAGCAAGTTacctaatatttaaaaacaattatgccACAT-AGGTGATTTAAACTTTCAAATTCAGCATGctattttctccccttcctttatta-attt-ttccGCAGATTAGTATTTGTTA----AATTATGTTACAT------AT--ACTACTAGACTAATATAAA-TATGGGTAAGCTGAACcctaac-aaaaaatatt---- i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19957739 914 - 48547382 GCCTGAC-----------------------------------------------------AAAACAC---------------ATGTAGTTATAGGAAGTATTAAAATAGTATCCTATAATTATATAACCATTTTAAAGTGTTAGTATATCAAC--------------------------------------------------------------------------TTTTT----------------TTCT-------TTATTGAGATCCCTGGAGCTTATCCAC-TGAATTGTATTTACACTCCTACCCATTTTttctcaaagtgcaatgtttggcctatttgcatcagaaccacctggaaggcctgtttaaaatgcagaattcttgggccccacctccaatatatag-acagaatttctgagtatggggTGAAGAGTCTTACAAGTGTGATATCTCCCGAGTTCTCA-AAAACACAGGCTTTTGATAATCAAAGCGACATAAGCCAAATACCACCTTGGAATGAGAA-GTCAAAGAAAAGCCAAAGAGCAAGCTGAAGATGACA-AAATTATGGCTCTAT-AAAGTCCCAATAACCCACCAGACATTTCTGCCTAAAGCCACCTGCAG--ACCACGGAGCGGCTTGGATGTGGTCTTGGTAATGCATTCCCAGCCTTCC--ATTTCAAAACAAATCACAAGTGAGTCAAGGAAGCCTCATTTTCAGTT-ATATCAAAGGCAATCAATAGGCAGCTTTAAAACAATGAGGTTGCTCATTTGGCTCGAACAAAAGTCATCAACCA-------CAAGCAATCTTGTGGTGTCCACTGGAACCTAATGGACTCACACAGATTTGGTAAACTTTTTACAATATTTTATATTGCCTTTTTATAATATTTTG-TAGATTCGCCAGTTACCTAATATTTAAAAACAATTATGCCACAT-AGGCGATTTAAACTTTCAAATTCAGCATGCTATTTTCTCCCCTTCCTTTATTA-ATTT-TTCTGCAGATTAGTATTTGTTA----AATTATTTTACAT------AT--ACTACTAGACTAATATAAA-TATGAGTAAGTTGAACCCTAAC-AAAAAATATT---- i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21318766 893 - 190850796 GCCTGAC-----------------------------------------------------AAAACAC---------------ATGTAGTTATAGCAAGTATTAAAATAGTATCCTACAATTACATAACCATTTTAAAGTGTTAATATATAAACAT-----------------------------------------------------------------------TTTTTT----------------TTCT-------TTATTGAGATCCCTGGAGCTTAACCAC-TTAATTTTATTCACACTGCTACCCAATCTttctcaaagtaccatgtttggcctatttgcaccagaaccagttggaatgcctgtttaaaattcagagttcgtgggccccgcctccaatatatag-acagaatttctgagtatgggacaaagaatctTACAAATTTGGTATCTCCTGAGTTCTCA-AAAACACAGACTTTTGATAATCAAAGTGACGTAAGCCAAATACGATCTTGGAATGAGAA-GTCAAAGAAAAGCCAAAGAGCAAGCTGAAGATGACACAAACTTTGGCACTAC-AGAATCCCAATAACCTACCAGATATTTCTGCCTAAAGCCACCTGCAG--GTCACTGAAAGGCTGGGATGTGGTCTTGGTAATGCATTCCCAGCCTTCC--ATTTAAAAACAAATCACAAGCGAGTCAAGAAAGCCTCATTTGCAGTT-ACATCAAAGACAATCAATAGGCAGCTTTAAAACAATCAGGTTGCTCATTTGGCTTGAACAAAAGTCATCAACCG-------CAAGCAATCCTGCGGTGTCCATTGTAACCTAATGGACTGACACAGATTCAGTA------------------ACACTACTTTTTTACAGTATTTCA-TAGATTAGACAGTTAACTAATATTTTAAAACAATTAGGCCGCAT-ATGTGATTTAAACTTTTGAATTCAGCAAGCTATTTTCTCCCCTTCCT---TTA-ATTT-TTCTGCAGATTAGTATTTTTTA----AATTATGTTACAT------AT--ACTATTAGACTAATATAAA-TATCAGCAAGCTGAACTCT-----AAAAatatt---- i calJac3.chr3 C 0 I 345 s mm10.chr5 49293465 745 + 151834684 GCCTGAC-----------------------------------------------------CA--------------------ATGAGATTACTGGAAGTCTTAGAACAATGTTTCTTAATT---------CTGTAAAGTTT-------TCAAC---------------------------------------------------------------------------CTTT----------------TTC------------TGATATCACAGAA--------------------------------------------------------------------GCACTAAAAACACCCAAGTTCC------------CATAATTCTTATGT----------ATATGTAC-TTGGAAATTCTTGACATAACATAGGAAAGATCAGTAATTTCTCATGTCCTAAGTTTTTATAAAACATACAATTGTGAATATAAAAGTGGCATATAGCAGTCACCCACAGGGAATGAAAA-GCCAATGAAAAGCCACATTGTAAACTGAAGTTCACA-AAACCAAGACTCAATAAAAGTCCCTTTAACCCATCAGTTAGTCCT-CCTAAAGTCAACCCCAG--G--ACTGAAAGTCTGAGGTAT-ATGCTGGGAAGGAATCACCAGCCTTCT--ACTTCAAAACACAGCTCAAA-GAGTCAAGGAAG---------CAGTTAACACCAAAGGCAATCAATGGGCAGCTTTCAAACAATTCGA-TGCTCACTTGGCTTTG--AGAAATCGTCAGCTATGTCCATCCAGTAATGCTGTTTTCTCTGTTCAAATGGAATGCACTTACAGGAATTGGAGACTCTGTCT-------------TTCCCTTTTGAT----------TAGAATACCTAGTGACTTCAGA----AGAACAATTAGG--------------------TTTAGGATTCAACAA----------CCCTTCACTCTACTA-ATTTATGTTGAAGATTAGTTTTCATTATTGTTATTATGTTATAGACAGAAAT--ACTGTTGGCCTAGCAAAAATTAAAAGTAAACTGAACTCC--C--AACAATGTC---- i mm10.chr5 C 0 C 0 s canFam3.chr3 3883597 1030 - 91889043 gcccgacgtgggactcgatcccgggtctccaggatcaggccctgagctgaagatggctctaaaccactgagccaccagggctgccTAGTTATTGGGAATATTAAAACAATGCCCTAAAAAAGTATAGCAATTTTACAGTGTCtatacacacacacacacacatataaatacgtatatatttatatgtatatatttatacatacatatataAAATTGATAGGCATAAATTCTTGGGATCTACTTTGGGATTCTTGGTATATTATTGAGATCCCAAGAGTTTATCCCTATCAATTTTATCCACACTCCTACCCTGTTTTCCTCAAAATAGGGTTTAGAGCCTATTTGCATGAGAACCACCTAGAATG-------------CAGATTTCATGGTCCCCACCTTCAACATACAACACAGGATCCTGTAATATGTGACAGGGGATCTTACAAATTTAATATCTCCTGCATTCTCA-AAAAC--AGAATTTTGATAATCTAAGCAACCAAAGCCAACTACCTTCTTGGAATGCAAA-GTCAAAGAAAAG----ATCATCATTTAAAGATTATG-AAATTATGGATCTATAAAAATTCCAATAATCCATCAGACAGTTCAGCAT----------GCAG---TTGTTGTGAGGTTGGGATGTGGTTTTGGTTGCATATCCCCAGACTTCC--ATTTCAAAACAAAGCAAAAAT--GTCAAGGAAGCTCCATTTTCGATT-ATATCAAAGGCAATCAATAGACAGGTTTAAAACAATCAGGATGCTCATTTGGCTTCAGAAAAAGCCATCAACCA-------CAAGCAATCCTGTGGTGTCTACTTGAATCTAAAGGATGCATGTAGGCTTGGTG------------------ACACAACCTTTTTATACCATTTTACCAGAATGGCCAAT------GTATTTAAAAACAGT----CCACATAACATGATTCAAAGTTGAGTATCCAGCATGCTAATTTTCTTCCCTCCTCTATTACATTT-TTTTGAGGATTAGTCTTTCTTT-TCCAATTA----GCAT------ATTAACAATTTGGTTAATAGAAT-TATGAGTAAGCTGAACTCCAGC-CAATGAGGTTGGTT i canFam3.chr3 I 120 C 0 a score=2145226.000000 s hg38.chr4_KI270790v1_alt 194900 627 + 220246 TGTGTATATTTTTTAAGGGAGAGGCACAGAACTTTCTGTCTCATTCTGTTGTGAGGTGAGATCCCCAAAAAAAAA-CAATTGTGAGTCTGGGGTAACTAAGTGAAGGACAACAGCATAAT-AAAAAAAGAATTAAAAAGAACAATAAATGTCCTGACCTTCCCTTGGCCCCCAGCCAACATATACAGATG----ATGAGTTGACTCAGTATATATTT-ATTGAGTTTCT---ACTTACCAGGTAGAGGTTGAGAGCTGAGTTTCA---GATGACGTTAAGATACAAACTGAGTATTTGGAAATGATGATTTACCATTCAGAAGAAAGGTCAATGTTGAAGGTCACATGGTGATATCATTCCTGAAGACATAGCAATTAAAACTGAATATGGATAGAATACCTGAAGGAGACAGAGGTGCCCTAC-AGGCTGTTGTCACATTGTCTCAGTTATAAATGGCATTGCCCTATTTTTCACTTGAAATTGAACTGTTTTACACTATTTCT-------------------TTATCAT-AAACAGATACTAGTTTTT------AAGAAAGAGAAGATGCAAATAAT---TTTTTTTAAA----------GTTAAGATCAT-------CAACAAAAAAAAC--AGGTCTAAATATTATTAAAA--AATAACGGTAGTATTAAAACAGAAGTATTCTTGA s panTro4.chr4 21583850 627 + 193495092 TGTGTATATTTTTTTAGGGAGAGGCACAGAACTTTCTGTCTCATTCTCTTGTGAGGTGAGACCCCAAAAAAAAAACCAACTGTGAGTCTGGGGTAACTAAGTGAAGGACAACAGCATAAT-AAAAAAAGAATTAAAAAGAACAATAAATGTCCTGACCTTCCCTTGGCCCCCAGCCAACATATACAGATG----ATGAGTTGACTCAGTATATATTT-ATTGAGTTTCT---ACTTATCAGGTAGAGGTTGAGAGCTGAGTTTCA---GATGACGTTAAGATACAAACTGAGTATTTGGAAATGATGATTTACCATTCAGAAGAAAGGTCAATGTTGAAGGTCACATGGTGATATCATTCCTGAAGACATAGCAATTAAAACTGAATATGGATAGAATACCTGAAGGAGACAGAGGTGCCCTAC-AGGCTGTTGTCACATTGTCTCAGTTATAAATGGCATTGCCCTATTTTTCACTTGAAATTGAACTGTTCTACACTATTTCT-------------------TTATCAT-AAACAGATACTAGTTTTT------AAGAAAGAGAAGATGCAAATAAT---TTTTTTTAAA----------GTTAAGATCAT-------CAAC-AAAAAAAC--AGGTCTAAATATTATTAAAA--AATAACGGTGGTATTAAAACAGAAGTATTCTTGA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21759342 625 + 198332218 TGTGTAT-TTTTTTAAGGGAGAGGCACAGAACTTTCTGTCTCATTCTCTTGTGAGGTGAGATCCCAAAAAAAACC-CAATTGTGAGTCTGGGGTAACTAAGTGAAGGACAACAGCATAAT-AAAAGAAGAATTAAAAAGAACAATAAATGTCCTGACCTTCCCTTGGCCCCCAAACAACATATACAGATG----ATGAGTTGACTCAGTATATATTT-ATTGAGTTTCT---ACTTATCAGGTAGAAGTTGAGAGCTGAGTTTCA---GATGACGTTAAGATACAAACTGAGTGTTTGGAAATGATGATTTACCACTCAGAAGAAAGGTCAATGTTGAAGGTCACATGGTGGTATCATTCCTGAAGACATAGCAATTAAAACTGAATATGGATAGAATACATGAAGGAGACAGAGGTGCCCTAC-AGGCTGTTGTCACATTGTCTCAGTTATAAATGGCATTGCCCTATTTTTCACTTGAAATTGAACTGTCTTACACTATTTCT-------------------TTATCAT-AAACAGATACTAGTTTTT------AAGAAAGAGAAGATGCAAATAAT---TTTTTTTTAA----------GTTAAGATCAT-------CAAC-AAAAAAAC--ACGTCTAAATATTATTAAAA--AATAAGGGTGGTATTAAAACAGAAGTATTCTTGA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20368678 626 - 85365473 TGTGTATATTTTTTAAGGGAGAGGCACAGAACTTTCTGTCTCATTCTCTTGCGAGGTGAGATCCCAAAAAAAAAC-CAATTGTGAGTCTGGTGTAAGTAAGTGAAGGACAACAGCATAACAAAAAAAAGAATTAAAAAGAACAATAAATGTGCTGACCTTCCCTTAACCCCCAGACAACATATGCAGATG----ATGAGTTGACTCAGTATATATTT-ATTGAGTTTCT---ACTTATCAGGTAGAGGTTGAGAGCTGAGTTTCA---CATGACGTTAAGATACAAACTGAGTATTTGGAAATGATGATTTACCGTTCAGAAGAAA-GTCAATGTTGAAGGTCACATGCTGATATCATTCCTGAAGACATAGCAATTAAAACTGAATATGGATAGAATACCTGAAGGAGACAGAGGTGCCCTAC-AGGCTGTCGTCACATTGTCTCAGTTATAAACGGCATTGCCCTATTTTTCACCTGAAATTGTACTGTCTTACACTATTTCT-------------------TTATCAT-AAACAGATACTAGTTTTT------AAGAAAGAGAAGATGCAAATAAA---TTTTTTTTAA----------AAAAAGATCGT-------CAAC-AAAAAAAA--CAGTCTAAATATTATAAAAA--AAGAAGAGTGGTATTAAAACAGAAGTATTCTTGA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16835463 623 + 184069350 TGTGTATATTTTTTAAGGGAGAGGCACAACACTTTCTGTCTCAATCTCTTGTGAGGTGAGATCCCCCCAAAAAA--CAATTGCGAGTCTGGGGTAACTAAGTGAAGGACAATAGCATAAT-AAAAAAAGCATTAAAAAGAACAATAAATGTGCTGAACTTCCCTTAACGCCCACCCAACATATACAGATG----ATGAGTTGACTCAGTATATATTT-ATTGAGTTTCT---ACTTATCAGGTAGAAGTTGAAAGCTGAGTTTCA---GATGATGTTAAGATACAAACTGAGTATTTGGAAATGATTATTTACCATTCAGAAGAAAGGTCAATGTTGAAGGTCACATGTTGATATCATTCCTGAAGACATAGCAATTAAAACTGAATATGGATAGAATACCTGAAGGAGACAAAGGTGCCCTAC-AGGCTGTTGTCACATTGTCTTCGTTATAAATGGCATTGCCCTATTTTTCACTTGAAATTGTACTGTCTTACACTATTTCT-------------------TTGTCAT-AAACAGATACTAGTTTTT------AAGAAAGAGAAGGTGCAAATAAA---TTTTTTTTAA----------GTTAAGATCAT-------CAAC-AAAAAA----TAGTCTAAATATTATTTAAA--AATAAGGGTTGTATTAAAACAGAAGTATTCTTGA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20885294 624 + 189454096 TGTGTATATTTTTTAAGGGAGAGGCACAAAACTTTCTGTCTCAATCTCTTGTGAGGTGAGATCCCCCCAAAAAA--CAATTGTGAGTCTGGGGTAACTAAGTGAAGGACAATAGCATAAT-AAAAAAAGCATTAAAAAGAACAATAAATGTGCTGAACTTCCCTTAACGCCCACCCAACATATACAGATG----ATGAGTTGACTCAGTATATATTT-ATTGAGTTTCT---ACTTATCAGGTAGAAGTTGAAAGCTGAGTTTCA---GATGATGTTAAGATACAAACTGAGTATTTGGAAATGATTATTTACCATTCAGAAGAAAGGTCAATGTTGAAGGTCACATGTTGATATCATTCCTGAAGACATAGCAATTAAAACTGAATATGGATAGAATACCTGAAGGAGACAAAGGTGCCCTAC-AGGCTGTTGTCACATTGTCTTCGTTATAAATGGCATTGCCCTATTTTTCACTTGAAATTGTACTGTCTTACACTATTTCT-------------------TTGTCAT-AAACAGATACTAGTTTTT------AAGAAAGAGAAGGTGCAAATAAA--TTTTTTTTTAA----------TTTAAGATCAT-------CAAC-AAAAAA----TAGTCTAAATATTATTTAAA--AATAAGGGTTGTATTAAAACAGAAGTATTCTTGA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16475507 623 + 178775436 tgtgtatattttttaaggcAGAGGCACAaaactttctgtctcattctctTGGGAGGTGAGAT-CCCCaaaaaaa--CAATTGTGAGTCTGGGGTAACTAAGTGAAGGACAAcagcataat-aaaaaaagaattaaaaagaacaataaatgtGCTGAACTACCCTTAACGCCCACCCAACATATACAGGTG----ATGAGTTGACtcagtatatattt-attgagtttct---actTATCAGGTAGAGGTTGAGAGCAGAGTTTCA---GATGATGTTAAGATACAAACTGAGTATTTGGAAATGATTATTTACCATTCAGAAGAAAGGTCAATGTTGAAGGTCACATGTTGATATCATTCCTGAAGACATAGCAATTAAAACTGAATATGGATAGAATACCTGAAGGAGACAGAGGTGCCCTAC-AGGCTGTTGTCACATTGTCTTCATTATAAATGGCACTGCCCTATTTTTCACTTGAAATTGAACTGTCTTACACTATTTCT-------------------TTGTCAT-AAACAGATACTAG-TTTT------AAGAAAGAGACGgtgcaaataaaa-ttttttaaaaa----------gttaagatcat-------taac-aaaaaa----cagtctaaatattattttaa--aataagggtgGTGTCAAAACAGAAGTATTCTTGA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19958653 626 - 48547382 TGTGTATATTTTTTAAGGGAGAGGCACAAAACTTTCCGTCTCATTCTCTTGTGAGGTGAGATCCTCCCAAAAAA--CAATTGTGAGTCTGGGGTAACTAAGTGAAGGACAACAGCATAAT-AAAAAAAGAATTAAAAAGAACAATAAATGTGCTGAACTACCCTTAACGCCCACCCAACATATACAGGTG----ATGAGTTGACTCAGTATATATTT-ATTGAGTTTCT---ACTTATCAGGTAGAGGTTGAGAGCTGAGTTTCA---GATGATGTTAAGATACAAACTGAGTATTTGGAAATGATTATTTACCATTCAGAAGAAAAGTCAATGTTGAAGGTCATATGTTGATATCATACCTGAAGACATAGCGATTAAAACTGAATTTGGATAGAATACCTGAAGGAGACAGAGGTGCCCTAC-AGGCTGTTGTCACATTGTCTTCGTTATAAATGGCACTGCCCTATTTTTCACTTGAAATTGAACTGTCTTACACTATTTCT-------------------TTGTCAT-AAACAGATACTAGTTTTT------AAGAAAGAGAAGGTGCAAATAAAATTTTTTTAAAAA----------GTTAAGATCAT-------CAAC-AAAAAA----CAGTCTAAATATTATTTTAA--AATAAGGGTGGTATCAAAACAGAAGTATTCTTGA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21320004 616 - 190850796 TGTGTATAATTTTTAAGGGAGAGGCACAAAACTTTCTGTCTCATTCGCTTGTGAGGTGAGATCCCCAAGAAGA---CAATTGTGAGTCTGGAATAACTAAGTGAAGGACAACAGCATAAT-AGAAAAAGAAGTAAAAAGAACAATACGTGTGCTGACCTTCCCTTAACCCCCACCCAACATATACAGATG----ATGAGTTGACTCAGTATGCCTTT-ATCGAGTTTCT---GCTTATCAGGTAGAGGTTGGAAGCTGAGTTTCA---GATGATGTTAAGATACAAACTGAGTATTTAGAAATGATGATTTAGCATTCAGAAGAAAGGTCAATGTTGAAGGTCACATGTTGATATCATTCCTGAAGACATAGCCATT-AAACTGAATATGGACAGAATACCTGAAGGAGACAGAGATGCCCTAC-AGGCTGTTGTCACATTGTCTCAGTTATAAATGGCATTGCCCTATTTTTCACTTGACAGTGAACTGTCTTATGCTATTTCT-------------------TTATCAT-AAACATATACTAGTTTTT------AAGAAAGAGAAGATGCAAATAAA-TTTTTTTTAAAA----------GTTGAGATC----------AAC-AAAAAA----AAGTCTAAAGATTAT----G--AAAAAGGGTGATATTAAAACAGAAGTATTCTTGA i calJac3.chr3 I 345 C 0 s mm10.chr5 49294210 630 + 151834684 TTTGTTTCCCTGTTATGGAAGAG--AAGAAAGTGTCTGCTTCATTTTCATGTGAGGTAGCAAGCTCAGAGAAAGTACAACTCTGAGCAATCTATGACTAGGTAAAGAATAGAAGCATACT----------------TAGAACAATATATTGGTTGCATTCTTCTTAAATCCTATCTGACATACATAAATG----GTGACTTGATTT-GCA-AGATTT-ATTAAGTTTCT---ATTTACCAGACAGACAGTGGGAGTTAGGTGTCT---CATGATATGAAGGTGCATCCTG-------GAGAAT------------TTCAAAAGAAAGGTCAATGCTAAAGGTCAGAC--CAATGTCAGTCTTGTAGGAGAAGGCTTTGAGAGTGAATGTCAATAGAGTTTCTCAAGAGAACCAAGGTACCCTGCAAGGCTATGGTCACATGATTTCAGTTATAAATAGCCACACATTATTTTTCACTTAAGATAGAACTCTCTGAAACTATATATGACAAAACAAACAAACAAATACAAAC-AAACAGATGTCACTTTCTTTTCAAAGGAAAGGGGAGATCAAAATTAA-----AGTCAAAAGTAGGAAATGGTTAAAATAGTAGCTGTGAAAT-CAAAGAAC--TAATTTAACCATTCAGAGAGATAAGAAAAATGGAACAAAGATAGAAGCTCTCTTGA i mm10.chr5 C 0 I 281 s canFam3.chr3 3884627 629 - 91889043 TGTGTTTGTTTTGTAAGGAAGAGGCACAGGACTTTCTGTCTCATTCTCTTGTGTGGTGAGATGGCAGAAAAGA---CCATTTCGGGTCTGGGGTAACTAAGTGAAGGGC---AGTATAAT-TTAAAAAAATTAAAGAAG--CAATAAATATGTTAGCCTTCCCCTAACCCCCAACTAACATAAACAAATAAATTATGGGTTGATTTAGTGAATTCTTAATTGAGTTTCTATCACTTACCAGGCAGATCTCAGGAATTAAGTTTCAGATGATGATGCTAGGGTACATACtgggcatttagaaatgctgatctaacattcagaataagagtcaaggttgaaggtcacatttcgaagccatatgtgtagaagtgacagttaaagctgaatatggatggaacccctgatggagACAGAGGTGACCTACAAGGCTCTTGTCACACGATCCCAGTTATAAATGGCTTTGCCCTACTTTTCATTCAAGACTGAACTGCCTTACACTGT-----------------------TTATCATAAAACAGGTAAGGTTTTTA------AAAGATGTAAATGTTTAAAAAAT---CAAAGAAGAG----------TTTAAAATCAA-------AACC-AAGAAAACAAAAAACTAAAGACTGT-ATGA--AATAACTGCGATATTAAAACTGAAATATTCTTGG i canFam3.chr3 C 0 C 0 a score=86815.000000 s hg38.chr4_KI270790v1_alt 195527 28 + 220246 TGTGCTCAGTAAAAAA-----GATTTTGTGACT s panTro4.chr4 21584477 28 + 193495092 TGTGCTCAGTAAAAAA-----GATTTTGTGACT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21759967 28 + 198332218 TGTGCTCAGTAAAAAA-----GATTGTGTTACT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20369304 28 - 85365473 TCTGCTCAGTAAAAAA-----GATTTTGTTACT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16836086 28 + 184069350 TTTACTCAGTAAAAAA-----GATTTTATTACT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20885918 28 + 189454096 TTTACTCAGTAAAAAA-----GATTTTATTACT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16476130 28 + 178775436 TTTGCTCAGTAGAAAA-----GATTTTGTTACT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19959279 28 - 48547382 TTTGCTCAGTAAAAAA-----GATTTTGTTACT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21320620 28 - 190850796 TTTGTTCAGTAAAAAA-----GATTCTGTTACT i calJac3.chr3 C 0 C 0 s canFam3.chr3 3885256 33 - 91889043 TTTGTTCAACAAAAAAAAAAGGATTTCCTCATT i canFam3.chr3 C 0 C 0 e mm10.chr5 49294840 281 + 151834684 I a score=3738930.000000 s hg38.chr4_KI270790v1_alt 195555 1018 + 220246 TATGT-AAACACCTAGGAATAGTAGAGGCAATGGTATTACAGAATCACAGAAACATATATACTCAGTGATGTCTTGTCTACACCAGGTTACAATTCTCTTTAGTGTGAGTAATCCC-TTTTGT---------GCTAAAATGTCCAGTGATGCTTTTATAACTAACTACACTAATGCCATAGGCC----------------------------AAATGCCAAAAG------AGAAGCACATATCCT-----AGTCCAACAGCTAATAATTACTGACATCATATAATGATAACCACCAGAGCTGCCAGCACATGCAACTTTTAGATTAAATTGGATAGGAGGGCCCACATTGGCATGCCCTGCTGGAAAAGGCAGCAATAGAACAGCAACAAGACATAACTGCTGTCATTCTTCCCAAATTATATATTCTTGT-TTTGAC-TTACATAAGGCAGAATATTAGATGATGT------GGAAGATG-AATACCTCTTTAGCACTTCATCCTACAAATCTAA-ATTCAATTTCAACTAGGTAAAGGCAAAGCTTGGCTCAGAAATCCTCTGTGCCTTTTGAATGTCCTTGAGTGTTTCCTAAGGATTCATTTCCCAACAGCAGTCTGAGGACGACCACACT-CACACACTCCCCTGGAACTTGCTGCCATACACCCTTCTCATCAGAGAAGCGTGATTAAATATTCAGGACCCTGCCATCGTGGTGCATAGCAAAGTAATGCAGGGCTCTGACCTCCTCCAGGAAAATCAGTCAGGGAACAAATGCATGACAACAGGTGGTACTAACTGCGTACTGTAACCGAAAACCACCTAATGCAGTTTTCATGTTACACACTCTC------------------CAATGC--TCACTGCA----------------GAAGATGTTGTACTAAAAGCTTTTTTAAATGCATGCTGCAAATTCATATGCAGATCCAGCCACAGCTGACCTTCGGCCCCATGTGAACTCTGTAGCCAACATGTGCctggaagaggaggcagtggaatgagccctggactgagtcaggcttg----tg-tctggctct--------ctcaaggactaaagttgggcaagctgcttcaggtttcaatctcctgata s panTro4.chr4 21584505 1018 + 193495092 TATGT-AAACACCTAGGAATAGTAGAGGCAATGGTATTACAGAATCACAGAAACATATATACTCAGTGATGTCTTGTCTACACCAGGTTACAATTCTCTTTAGTGTGAGTAATCCC-TTTTGT---------GCTACAATGTCCAGTGATGCTTTTATAACTAACTACACTAATGCCATAGGCC----------------------------AAATGCCAAAAG------AGAAGCACATATCCT-----AGTCCAACAGCTAATAATTACTGACATCATATAATGATAACCACCAGAGCTGCCAGCACATGCAACTTTTAGATTAAATTGGATAGGAGGGCACACATTGGCATGCCCTGCTGGAAAACGCAGCAATAGAACAGCAACAAGACATAACTGCTGTCATTCTTCCCAAATTATATATTCTTGT-TTTGAC-TTACATAAGGCAAAATATTAGATGATGT------GGAAGACA-AATACCTCTTTAGCACTTCATCCTACAAATCTAA-ATTCAATTTCGACTAGGTAAAGGCAAAGCTTGGCTCAGAAATCCTCTGTGCCTTTTGAATGTCCTTGAGTGTTTCCTAAGGATTCATTTCCCAACAGCAGTCTGAGGACGATCACACT-CACACACTCCCCTGGAACTTGCTGCCATACACCCTTCTCATCAGAGAAGCGTGATTAAATATCCAGGACCCTGCCATCGTGGTGCATAGCAAAGTAATGCAGGGCTCTGACCTCCTCCAGGAAAATCAGTCAGGGAACAAATGCATGACAACAGGTGGTACTAACTGCGTACTGTAACCGAAAACCACCTAATGCAGTTTTCATGTTACACACTCTC------------------CAATGC--TCACTGCA----------------GAAGATGTTGTACTAAAAGCTTTTTTAAATGCATGCTGCAAATTCATATGCAGATCCAGCCACAGCTGACCTTCGGCCCCGTGTGAACTCTGTAGCCAACATGTGCctggaaggggaggcagtggaatgagccctggactgagtcaggcttg----tg-tctggctct--------ctcaaggactaaagttgggcaagctgcttcaggtttcaatctcctgata i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21759995 1010 + 198332218 TATGTAAAACACCTAGAAATAGTAGAGGCAATGGTATTACAGAATCACAGAAACATATATACTCAGTGA-----TGTCTACACCAGGTTACAATTCTCTTTAGTGTGAATAATCCC-TTTTGT---------GCTAAAATGTCCAGTGACGCTTTTA----TAACTACACTAATGCCATAGGCC----------------------------AAATGCCAAAAG------AGAAGCACATATCCT-----AGTCCAACAGCTAATAATTACTGACATCATATAATGATAACCACCAGAGCTGCCAGCACATGCAACTTTTAGATTAAATTGGATAGGAGGGCACACATTGGCATGCCCTGCTGGAAAATGCAGCAACAGAACAGCAACAAGACATAAATGCTGTCATTCTTCCCAAATTATATATTCTTGT-TTTGAC-TTACATAAGGCAAAATATTAGATGATGT------GGAAGATA-AATACCTCTTTAGTACTTCATCCTACAAATCTAA-ATTCAATTTCGACTAGGTAAAGGCAAAGCTTGGCTCAGAAATCCTCTGTGCCTTTTGAATGTCCTTGAGTGTTTCCTAAGGATTCATTTCCCAACAGCAGTCTGAGGACAATCACTCT-CACACACTCCCCTGGAACTTGCTGCCATACACCCTTCTCATCAGAGAAGCGTGATTAAATATTCAGGACCCTGCCATCGTGGTGCATAGCAAAGTAATGCAGGGCTCTGACCTCCTCCAGGAAAATCAGTCAGGGAACAAATGCATGACAACAGGTGGTACTAACTGTGTACTGTAACCAAAAACCACCTAATGCAGTTTTCATGTTACACACTCTC------------------CAATGC--TCACCGCA----------------GAATATGTTGTACTAAAAGCTTTTTTAAATGCATGCTGCAAATTCATATGCGGTTCCAGCTACGGCTGACCTTCGGCTCCATGTGAACTCTGTAGCCAACATGTGCctggaagggggggaagtggaatgagccttggactgagtcaggcttg----tg-tctagctct--------ctcaaggactaaagttgggcaagctgcttcaggtttcaatcgcccgata i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20369332 1022 - 85365473 TATGT-AAATACCTAGAAATAGTAGAGGCAATGGTATTTGAGAATCACAGAAACATATATACTCAGTGATGTCTTGTCTACACCAGGTTATGATTCTCTTTAATGTGAGTAATCCC-TTTTGT---------GCTAAAATGTCCAGTGATGCTTTTA----TAACTACACTAATGCCATAGGCC----------------------------AAATGCCAAAAG------AGAAGCACATATCCT-----AGTCCAACAGCTAATAATTACTGACATCATGTAATGATAACCACCAGAGCTGCTAGCACATGCAACTTTCAGATTAAATTGGATAGGAGGGCACACATTGGCAGGCCCTGCTGGAAAATGTAGCAATAGAACAGCAACAAGACATAACTGCTGTCATTCTTCCCAAATTATATATTCTTGT-TTTTAC-TTACATAAGGCAAAATATTAGATTATGT------GGAAGATA-AATACCTCTTTAGTACTTCATCCTACAAATCTAA-ATTCAATTTCGACTAGGTAAAGGCAAAGCTTGGCTCAGAAATCCTCTGTGCCTTTTGAATGTCCTTGAGTGTTTCCTAAGGATTCATTTCCCAACAGCAGTCTGAGAACGATCACACT-CATACACTCCCCTGGAACTTGCTGCCATACACCCTTCTCATCAGAGAAGCGTGATGAAATATTCAGGACCCTGCCATCATGGTGCATAGCAGAGTAATGCAGGGCTCTGACCTCCTCCAGGAAAATCAGTCAGGGAACAAATGCATGACAACAGGTGGTACTAACTATGTACTGTAACCAAAAATCTCCTAAAGCAGTTTCCATGTTACACACTCTC------------------CAATGC--TCACTGCA----------------GAAGATGTTGTACTAAAAGCTTTTTTAAATGCATGCTGCAAATTCATATGCAGATCCAGCCACAGCTGACCTTCGGCTCCATGTGAACTCTGTAGCCAACATGTGCCTGGATGGGGAGgcagtggaatcagctctggaatgagtcaggcttg----tg-tctggctctctcaaggactcaaggactaaaattgggcaagttgcttcaggtttcaatctcttgata i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16836114 1008 + 184069350 TATGT-AAACACCCAGAAATAGTAGAAGCAATGGTATTAGAGAATCGCAGAAACATACATACTCAGTGATGTCTTGTCTACACCAGGTTACAATTCTCTTTAGTGTGAGTAATCCCTTTTTGG---------GCTAAAATGTCCAGTGATGCTTTTA----TAACTACACTAATGCCATAGGCC----------------------------AAATGCCAAAAG------AGAAGCACATATCCT-----AGTCCAACAGCTAATAATTACTGACATCATATAATGACAACCACCAGAGCTGCCAGGACATGGAACCTTTAGATTAAATTGGATAGGAGGGCACACATTGGCATGCTGTGCTGGGAAACATAGCAATAG------AACAAGACATAACTGCTGTCATTCTTCCCAAATTATATATTCTTGT-TTTGAC-TTACATAAGGCAAAATATTAGATTATAT------GGAAGAT--AATACCTCTTTAGTACTTCATCCTACACATCTAA-ATTCAATTTCGACTAGGTAAAGGCAGAGCTTGGCTCAGAAATCCTCTGTGCCTTCTGAATGTCCTTGAGTGTGTCCTAAGGATTCATTTCCCAACAGCAGTCTGAGGACGATCACACT-CACACACTCCCCTGGAACTTGCTGCCATACCCCCTTCTCATCAGAGAAGCATGATTAAATATTCAGGACCCTGCCATCGTGGTGCATAGCAAAGTAATGCAGGGCTCTGACCTCCTCCAGGAAAATCAGTCAGGGAACAAATGCATGACAACAGGTGGTACTAACTGTGTACTGTAACCGAAAACCACCTAATGCAGTTTTCATGTTACACACTCTC------------------CAATAC--TCACTGCA----------------GAAGATGTTGTACTAAAAGCTTTTTTAAATGCATGCTGCAAATTCACATGCAGATCCAGCCACAGCTGACCTTCGGCTCCATGTGAACTCCGTAGCCAGCATGTGCCTGGAGGGGGAGgcagtggaatgagccctggactgagtcagacttg----tg-tctggctct--------ctcaaggactaaggttgggcaagctgcttcaggtttcaatctcctgata i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20885946 1008 + 189454096 TATGT-AAACACCCAGAAATAGTAGAAGCAATGGTATTAGAGAATCGCAGAAACATACATACTCAGTGATGTCTTGTCTACACCAGGTTACAATTCTCTTTAGTGTGAGTAATCCCTTTTTGG---------GCTAAAATGTCCAGTGATGCTTTTA----TAACTACACTAATGCCATAGGCC----------------------------AAATGCCAAAAG------AGAAGCACATATCCT-----AGTCCAACAGCTAATAATTACTGACATCATATAATGACAACCACCAGAGCTGCCAGGACATAGAACCTTTAGATTAAATTGGATAGGAGGGCACACATTGGCATGCTGTGCTGGGAAACATAGCAATAG------AACAAGACATAACTGCTGTCATTCTTCCCAAATTATATATTCTTGT-TTTGAC-TTACATAAGGCAAAATATTAGATTATAT------GGAAGAT--AATACCTCTTTAGTACTTCATCCTACACATCTAA-ATTCAATTTCGACTAGGTAAAGGCAGAGCTTGGCTCAGAAATCCTCTGTGCCTTCTGAATGTCCTTGAGTGTGTCCTAAGGATTCATTTCCCAACAGCAGTCTGAGGACGATCACACT-CACACACTCCCCTGGAACTTGCTGCCATACCCCCTTCTCATCAGAGAAGCATGATTAAATATTCAGGACCCTGCCATCGTGGTGCATAGCAAAGTAATGCAGGGCTCTGACCTCCTCCAGGAAAATCAGTCAGGGAACAAATGCATGACAACAGGTGGTACTAACTGTGTACTGTAACCGAAAACCACCTAATGCAGTTTTCATGTTACACACTCTC------------------CAATAC--TCACTGCA----------------GAAGATGTTGTACTAAAAGCTTTTTTAAATGCATGCTGCAAATTCACATGCAGATCCAGCCACAGCTGACCTTCGGCTCCATGTGAACTCCGTAGCCAGCATGTGCCTGGAGGGGGAGgcagtggaatgagccctggactgagtcagacttg----tg-tctggctct--------ctcaaggactaaggttgggcaagctgcttcaggtttcaatctcctgata i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16476158 998 + 178775436 TATGT-AAACTCCTAGAAACAGTAGAAGCAATGGTATTAGAGAATCGCAGAAACATACATACTCAGTGATGTCTTGTCTACACCAGGTTACAATTCTCTTTAGTGTGAGTAATCCCTTTTTGG---------GCTAAAATGTCCAGTGATGCTTTTA----TAACTACACTAATGCCGTAGGCC----------------------------AAATGCCAAAAG------AGAAGCACATATCCT-----AGTCCAACAGCTAATAATTACTGACATCATATAATGACAACCACCAGAGCTGCCAGCACATGGAACCTTTAGATTAAATTGGATAGGAGGGCACACATTGGCATGCTGTGCTGGAAAACGTAGCAATAG------AACAAGACATAACTGCTGTCATTCTTCCCAAATTATATATTCTTGT-TTTGAC-TTACATAAGGCAAAATATTAGATTATAT------GGAAGAT--AATACCTCTTTAGTACTTCATCCTACACATCTAA-ATTCAATTTCGACTAGGTAAAGGCAGAGCTTGGCTCAGAAATCCTCTGTGCCTTCTGAATGTCCTTGAGTGTGTCCTAAGGATTCATTTCCCAACAGCAGTCTGAGGACgatcacact-cacacactccccTGGAACTTGCTGCCATACCCCCTTCTCATCAGAGAAGCATGATTAAATATTCAGGACCCTGCCATCGTGGTGCATAGCAAAGTAATGCAGGGCTCTGACCTCCTCCAGGAAAATCACTCAGGGAACAAATGCATGACAACAGGTGGTACTAACTGTGTACTGTAACCGAAAACCACCTAATGCAGTTTTCATGTTACACACTCTC------------------CAATAC--TCACTGCA----------------GAAGATGTTGTACTAAAAGCTTTTTTAAATGCATGCTGCAAATTCACATGCAGATCCAGCCACAGCTGACCTTCGGCTCCAT---------GTAGCCAGCATGTGCCTGGAGGGGGAGGCAGTGGAATGAGCCCTGTACTGAATCAGACTTG----TG-TCTGGCTCT--------CTCAAGGACTAA-GTTGGGCAAGCTGCTTCAGGTTTCAATCTCCTGATA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19959307 1009 - 48547382 TATGT-AAACACCTAGAAACAGTAGAAGCAATGGTATTAGAGAATCGCAGAAACATACATACTCAGTGATGTCTTGTCTACACTAGGTTACAGTTCTCTTTAGTGTGAGCAATCCCTTTTTGG---------GCTAAAATGTCCAGTGATGCTTTTG----TAACTACACTAATGCCATAGGCC----------------------------AAATGCCAAAAG------AGAAGCACATATCCT-----AGTCCAACAGCTAATAATTACTGACATCATATAATGACAACCACCAGAGCTGCCAGCACATGGAACTTTTAGATTAAATTGGATAGGAGGGCACACATTGGCATGCTGTGCTGGAAAACGTAGCAATAG------AACAAGACATAACTGCTGTCATTCTTCCCAAATTATATATTCTTGT-TTTGAC-TTACATAAGGCAAAATATTAGATTATAT------GGAAGATA-AATACCTCGTTAGTACTTCATCCTACAGATTTAA-ATTCAATTTCGACTAGGTAAAGGCAGAGCTTGGCTCAGAAATCCTCTGTGCCTTCTGAATGTCCTTGAGTGTGTCCTAAGGATTCATTTCCCAACAGCAGTCTGAGGACGATCACACT-CACACACTCCCCTGGAACTCGCTGCCATACCCCCTTCTCATCAGAGAAGCATGATTAAATATTCAGGACCCTGCCATCGTGGTGCATAGCAAACTAATGCAGGGCTCTGACCTCCTCCAGGAAAATCAGTCACGGAACAAATGCATGACAACAGGTGGTACTAACTGTGTACTGTAACCGAAAACCACCTAATGCAGTTTTCATGTTACACACTCTC------------------CAATAC--TCACTGCA----------------GAAGATGTTGTACTAAAAGCTTTTTTAAATGCATGCTGCAAATTCATATGCAGATCCAGCCACAGCTGACATTCGGCTCCATGTGAACTCGGTAGCCAGCATGTGCCTGGAGGGGGAGgcagtggaatgagccctggactgagtcagacttg----tg-tctggctct--------ctcaaggactaaggttgggcaagctgcttcaggtttcaatctcctgata i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21320648 987 - 190850796 TATGT-AAACACATAGAAATAGTAGAGGCAATGGCATTAGAGAATCATAAAAACACATTTACTCAGTGATGTCTTGTCTATAGCAGGTTATAATTCCCTTTCGTGTGAGTAATCCC-TTTTGT---------GCTAAAATATCCACTGACGCTTGTA----CAACTACACTAATGCCAGAGGCC----------------------------AAATGCCAAAAG------AGAAGCACATATTCT-----GGTCCACCAGCTAATAATTCCTGACATCATATAATGATAACCGCCAGAGCTGCCAGCACATGCAAGTTTTAAATTAAATCGGATAGGAGGGCACACGTTGGCATGCCATGCTGGAAAATGTAGCAATAGAACAGCAACAAGACATAACTGCTGTCATTTTCCCCAAATTATATATTCTTGT-TTTGACTTTAAATAAGGCAAAATATTCGATTATAT------GGAAGATA-AATACCTCTTTAGTAGTTCATCCTACAAATCTAA-ATTCAGTTTCTACTAGGTAAAGGCAAAGCTTGGCTCAGAAAGCCTCAGTGCCTTTTGAACGACCTTGAGTGTGTCCTAAGGATTCATTTCCAAACAGCAGTCTGAGGACGATCACACTGCACATGCTCCCCTGGAACTTGCTGCCATACCCCCTTCTCATCAGAGAAGCGTGATTAAATATTCAGGACTCTGCCATCGTGGTGCATAGCAAAGTAATACAGGACTTTGACCTCCTCCAGGAAAATCAGTCAGGGAACAAATGCATGACAACAGGTGGTACTAACTACGTACTGTAACCAAAAACCACCTAATGCAGTTTTCATGTTACACACTCTC------------------CAGTAC--TCACTGCA----------------GAAGATGTTGTACTAAAAGCTTTTCTAAATGGATGCGGCAAATTCATAT-----------------------------CCATGTGAACTCTCTAGCCAACATGCGCCTGGAGGGGGAGGCagtggaatgagccctggactgagtcaggcttg----tg-tctggctct--------ctcaagaactaaagttgggcaaattgcttcaggtttcagtctcctgatg i calJac3.chr3 C 0 C 0 s mm10.chr5 49295121 1021 + 151834684 TATAG-AAACATTTTGAAATATCAGACACAATGGCATTAAGTAATCAAATAAATATACATACTCAGCGACAGC--ATCTTCACCATGTTATAGTTCCATTTAGTAAGAATTTTCTT-TTTTGC-------------CATTTTTTGTTGAAGCTTTTA----TAACTTCTCTAATACATCAGGCCATTTCCCAGGAAATTTTTTAAAAATAGAAAAATTCAAAAGCAGTACAGAAGTCCATATTCCAGGCAAGTCTAGTACCTAATAATTACCTTCTCCATACAATGGCAACCAGCAATGATGGC--CACACACAGCTTTCAAATTACACTACACAAGAGAACACACTCT-----------TTGGGAAGCAAAGGACTATGCCAA-CATGAAACACAACTTGGACCATTCTT-CCAAGTTATACATTTTCTTGTTGGAA-TTACACAAAGCCACATTTTACACTATAGTCAAAAGAAAGACATGAAATCCTCTGAATATCAGATCCCTC---TCTCATATGCAGCCTTAAC--AGTACAGA-AAAGAATGTCTGCCAGGCCTCTCCTGACCTTTGAATGTCCTTGAGCTTGCTCTAAGGAAGCAGTTCTGAA-ATCAGTCTAAG-ATGATCTTACTGCACAGGATCCCCTGGAACTTGCTGCCAGAGCTCCTTCTCATCAGAGTGGCTAGATTAAATATTCAGGACTCTGGCATGGTGGTGAATCACAAAGCGATGCAGGGCTCTGACCTTCCTCAGGAAAATCAGTCAGTGGACAAATGTGTGACAACA-TTGACATTAAGTGTGTGCTATAAAAGAGAGCCTCCTAATGCAGTCTGCAAACTGCATATTCTCAGGCATGGTAAAAGCATTAAATTC--ACAAGGCA----------------GAGCA---TGTACTAAAGGCCTTGCAGAATGCAC-TTGTGAATTCATATTCAGGTCTATCTGCAGCTGACCTAC-TCACAATGCATACCTCTCAGCCAGTGTAGG----------------GTGGGGTGAGTACTAGGC--------ACTTGGGATTG-CCTTCTTCT--------CCTGGAGGTTGGAGCTGAG-AAGGTGCCTCACATCTCAA----CTGATA i mm10.chr5 I 281 I 2 s canFam3.chr3 3885289 999 - 91889043 GACAT-AAACAGCTAGAAATACTAGATGCCATGGCATTAGATGATCACAGAACCATATTTACTCAGTACCAT----TATACATCAGGTCATGATTCTCTTTGGTGTGAGTATTCGC-TTTCATAAAGTTCCTGCTAAAGTTTCCATGGATGCTTTTA----CAACCAAACAAATGCCAT-GGCC----------------------------AAATGCCTAAAA------AGCAACACATATCCT-----AGCCCTGCAGATAATAATTACCTATGTCATACCATGACAACCTCTAGAGCTGCAGGTACAGGTGACTTTCGAATTAAATTA-------------------GTATGCCATTATGGAAGACAAAGCAATGAAACACCAAAGGAATGCAACTGCTGCCACTCTCCCAAAACTATATGTTCTTGCCCTTGAC-TTACATAAAGCAAAATATTAGATCACAC------TGAA-----AATACTTGTTTCAGAGTTTGTGTCACAACCCTAA-ATTCAGTTTTGACTAGCTGGAGAACAAGAACGTCTTAGA-ATCCTCTATGCCTTTTTCATGTCCTTGAGTGCGCCCTAAGGATTCATTTCCAAACAGCAGTCTGAGGATCAGCACACGGCACACACTCCCCTGGAACTCACTGCCATACGCCCGTCTCATCAGAGCAACGTGATTAAATATTCAGGATCCTGCCACGGTGGTGCAGAGCAAAGTAATGCAGGGCTCTGACCTTCTCTAGGAAAATCAGTCAGGGAACAAACGCGTGACAATGGGTGACACTAACTATGTGCTGTAACTGAAGAGCACCTAATGCAGTTTTCATGTTACACACTCTC------------------CAGCACAGTAAATGCACTATTAAACTCTTGGTGCACAAGTCATACTAAAAGCCTCCCT-AATGCATGCTGCAAATGCATATTCAGAGCCCTCCATGGCTGACCCTC-GCTCCATGTGAACTTCATGGCCAAC--GTGCCAGGCGTgggag------------gccatggactaagtcaggcttg----cattccagatct--------ttcaaggaccaaagttgggcaagtcgctacgggtctccatttctgagtc i canFam3.chr3 C 0 C 0 a score=1154932.000000 s hg38.chr4_KI270790v1_alt 196573 374 + 220246 tgtaaaatgaaggtattatattaaacaacatctGTTTTATGTTCCAATTCAAAAAAA---------ATCTAGAGATAGAA----TTCTAAATATCATTAAAATAGCCAAAGAATGCCCTGtaatgtggatctactttgatttattcacccttacccctattgataaactttcaggatgttttcagttgtactgctatttcaaacactactgcaataaccagccctgtacacatatcctCACAATATAAAGCTTTA-TTTTTTCTATAGATTAATTTCATTAATGTAGAGGCACGCCTACTACCTATGGTTAAGTAATAAAGCAAGTTAAGAAGATATGTACATGTG-------------------------ATATGTATGATCC----TACTTTTATGAAATAAAGCTACATTCTCT s panTro4.chr4 21585523 374 + 193495092 tgtaaaatgaaggtattatattaaacaacatctGTTTTATGTTCCAATTCAAAAAAA---------ATCTAGAGATAGAA----TTCTAAATATCATTAAAATAGCCAAAGAATGCCCTGtaatgtggatctactttgatttattcacccttacccctattgataaactttcaggatgttttcagttgtactgctatttcaaacactactgcaataaccagccctgtacacatatcctCACAATATAAAGCTTTA-TTTTTTCTATAGATTAATTTCATTAATGTAGAGGCACGCCTACTACCTATGGTTAAGTAATAAAGCAAGTTAAGAAGATATGTACATGTG-------------------------ATATGTATGATCC----TACTTTTATGAAATAAAGCTACATTCTCT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21761005 374 + 198332218 tgtaaaatgaaggtattatattaaaCAACATGTGTTTTATAATCCAATTCAAAAAAA---------ATCTAGAGATAGAA----TTCTAAATATCATTAAAATAGCCAAAGAATGCCCTGTAAtgtggatctacttccgtttattcacccttacccctattgataaacttttaggatgttttcagttgtaatgctatttcaaacactgctgcaataaccagccctgttcacatgtcctcacaatataaagcttta-ttttttctataggtTAATGTCATTAATGTAGAGGCATGCCTACTACCTATGGTTGAGTAAAAAAACAAGTTAAGAAGGTATGTGCATGTG-------------------------ATATGTATGATCC----TACTTTTACGAAATAAAGCTACATTCTCT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20370354 372 - 85365473 tgtaaaatgaaggtattaTATTAAGCAACATCTGTTTTATGTTCCAATTC-AAAAAA---------atctagagatagaa----ttctaaatatcatttaaatagccaaagaataccctgtaatgtggatctacttccgtctattcacccttacccctattgataaacttttaggatg-tttcagttgtactgctatttcaaacactactgcaatgaacagccctgtacacatatcctcacaatataaagcttta-ttttttctataggtTAATGTCATTAACGTAGAGGCATGTCTACTACCTATGGTTAAGTAAAAAAGCAAGTTAAGAAGACATGTACATGTG-------------------------ATATGTATGATCC----TACTTTTATGAAATAAAGCTATATTCTCT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16837122 373 + 184069350 tgtaaaatgaaggtaTCAT-TTAAATAACATCTGTTATATGTTCCAATTC-AAAAAA---------ATCTAGAGATAGAC----TTCTAAATAGCATTAAAATCGCCAAAGAATGCCctataatgtggatccacttctgtttactcacccttacccctattgataaacttttaggatgttttcagtcgtactgctatttcaaacaatactgcaacaaacagtcctgtacacatatcctcacaatataaagctttatTTTTTTCCACAGGTTAATGTCATTAACTTAGAGGCATGCCTACTACCCATGGTTAAGTAAAAAAGCAAATTAAGAAGATACGTACATGCG-------------------------ATATGTATGATCC----TATGTTTATGAAATAAAGCTACATTCTCT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20886954 373 + 189454096 tgtaaaatgaaggtaTCAT-TTAAATAACATCTGTTATATGTTCCAATTC-AAAAAA---------ATCTAGAGATAGAC----TTCTAAATAGCATTAAAATCGCCAAAGAATGCCctataatgtggatccacttctgtttactcacccttacccctattgataaacttttaggatgttttcagttgtactgctatttcaaacaatactgcaacaaacagtcctgtacacatatcctCACAATATAAAGCTTTATTTTTTTCCACAGGTTAATGTCATTAACTTAGAGGCATGCCTACTACCCATGGTTAAGTAAAAAAGCAAATTAAGAAGATACGTACATGCG-------------------------ATATGTATGATCC----TATGTTTATGAAATAAAGCTACATTCTCT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16477156 373 + 178775436 TGTAAAATGAAGGTATCAT-TTAAATAACATCTGTTATATGTTCCAATTC-aaaaaa---------aTCTAGAGATAGAC----TTCTAAATAGCATTAAAATCGCCAAAGAATGCCCTATAATGTGGATCCACTTCTGTTTACTCACCCTTACCCCTATTGATAAACTTTTAGGATGTTTTCAGTTGTACTGCTATTTCAAACAATACTGCAACAAACAGTCCTGTACACATATCCTCACAAtacaaagctttatttttttctacaggtTAATATCATTAACTTAGAGGCATGCCTACTACCCATGGTTaagtaaaaaagcaaattaagaaGATACGTACATGCG-------------------------ATATGTATGATCC----TATGTTTATGAAATAAAGCTACATTCTCT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19960316 374 - 48547382 tgtaaaacgaaggtattatattaaataacatctgttatatgttccaattc-AAAAAA---------ATCTAGAGATAGAA----TTCGAAATATCATTAAAatcgccaaagaatgccctataatgtggatccacttctgtttactcacccttacccctattgataaacttttaggatgttttcagttgtactgctatttcaaacaatgctgcagtaaacagccctgtacacatatcctcacaatataaagctttatTTTTTTCTATAGGTTAATGTTATTAACTTAGAGGCATGCCTACAACCCATGGTTAAGTAAAAAAGCAAGTTAAGAAGATACATACATGCG-------------------------ATATGTATGATCC----TATGTTTATGAAATAAAGCTACATTCTCT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21321635 371 - 190850796 cgtaaaatgaaggtattatattaaataacatctgttttattttccaactc-AAAGAA---------ATCTATAGATAGAA----TTCTAAATAGTATTAAACTAGTCCAAGaataccttgtaatgtagatctacttctgtttattcatccctacccctattgataaacttttaggatgttttcagttgtcctgctatttcaaacaatactgcaataagcagccctgtagacatatcctcACAACATAAAGCTTTA-TCTTTTCTATAGGTTAATGTCATTAACTTAGAGGCATGTATACTACCTATAATTAAGTAAAAAAGCGAGTTAAGGAGACATGTACATA-------------------------------ATATGATCCtttttttttttttgagatggagtctcgttctct i calJac3.chr3 C 0 I 301 s canFam3.chr3 3886288 407 - 91889043 tgaaaaatgagggcattgggttcaataacccccgccttctcttccaactc-AAAAAAAGTATAAATATCTACAAAAGGAGCTCTCTCTATATATAttttaaatagccacatactgttccatgacatggacatgctttaattcattc-cccatacctccaccaacagatacgcaggatgtattcagttgtccagataccacaaacaatactgca-taaataaccctacgtgcacatccttaggatggggagctt---ttgtttctataggTTTGTACCATTTACTTAGAGGCATATCTATTACATACTGGTAAGTGAGAAAATAAGTTACAAAAACatatatatatatgtatatatgtatatatacacatatatatatataACCG----TAATTTTGTGAAATAAAACTGCATTCTCT i canFam3.chr3 C 0 C 0 e mm10.chr5 49296142 2 + 151834684 I a score=5576.000000 s hg38.chr4_KI270790v1_alt 196947 2 + 220246 AT s panTro4.chr4 21585897 2 + 193495092 AT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21761379 2 + 198332218 AT i ponAbe2.chr4 C 0 I 1 s nomLeu3.chr20 20370726 2 - 85365473 AT i nomLeu3.chr20 C 0 I 1 s rheMac3.chr5 16837495 2 + 184069350 AT i rheMac3.chr5 C 0 I 1 s macFas5.chr5 20887327 2 + 189454096 AT i macFas5.chr5 C 0 I 1 s papAnu2.chr5 16477529 2 + 178775436 AT i papAnu2.chr5 C 0 I 1 s chlSab2.chr27 19960690 2 - 48547382 AT i chlSab2.chr27 C 0 I 1 s canFam3.chr3 3886695 2 - 91889043 AC i canFam3.chr3 C 0 C 0 e mm10.chr5 49296142 2 + 151834684 I e calJac3.chr3 21322006 301 - 190850796 I a score=90050.000000 s hg38.chr4_KI270790v1_alt 196949 30 + 220246 -GGGGTAGATTTCGTTTGTATAACATTGCAG s panTro4.chr4 21585899 30 + 193495092 -GGGGTAGATTTCGTTTGTATAACATTGCAG i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21761382 30 + 198332218 -GGGGTGTATTTCATTTGTATAACATTGCAG i ponAbe2.chr4 I 1 C 0 s nomLeu3.chr20 20370729 30 - 85365473 -GGGGTATATTTCATTTGTATAACATAGCAG i nomLeu3.chr20 I 1 C 0 s rheMac3.chr5 16837498 30 + 184069350 -GGGGTATATTTCATTTGTATAAGATTTCAG i rheMac3.chr5 I 1 C 0 s macFas5.chr5 20887330 30 + 189454096 -GGGGTATATTTCATTTGTATAAGATTTCAG i macFas5.chr5 I 1 C 0 s papAnu2.chr5 16477532 30 + 178775436 -GGGGTATATTTCATTTGTATAAGATTTCAG i papAnu2.chr5 I 1 I 174 s chlSab2.chr27 19960693 30 - 48547382 -GGGGTATATTTCATTTGTATAACATTGCAG i chlSab2.chr27 I 1 C 0 s calJac3.chr3 21322307 30 - 190850796 -GGAGTATATTTCATTTGTATAACATTGCAA i calJac3.chr3 I 301 C 0 s canFam3.chr3 3886697 31 - 91889043 ATGTGCATATCTCCTTTGTAAAGAATAAAAA i canFam3.chr3 C 0 C 0 e mm10.chr5 49296142 2 + 151834684 I a score=68409.000000 s hg38.chr4_KI270790v1_alt 196979 33 + 220246 CCTATTTTCTTGAA---GGGAGAGAAAAGATGCTAT s panTro4.chr4 21585929 33 + 193495092 ACTATTTTCTTGAA---GGGAGAGAAAAGATGCTAT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21761412 33 + 198332218 CCTATTTTCTTGAA---GGGAGAGAAGAGATGCTAT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20370759 33 - 85365473 CCTACTTTCTTGAA---GGGACAGAAGAGATGCTAT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16837528 25 + 184069350 --------CCTAAA---GGAAGAGAAGAGATGCTAT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20887360 25 + 189454096 --------CCTAAA---GGAAGAGAAGAGATGCTAT i macFas5.chr5 C 0 C 0 s chlSab2.chr27 19960723 33 - 48547382 CCTACTTTCTTGAA---GGAAGAGGAGAGATGCTAT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21322337 36 - 190850796 CCTGCTTTCTTGAATGCAGGAGAGAAGAGATGCTAT i calJac3.chr3 C 0 C 0 s canFam3.chr3 3886728 33 - 91889043 CCTAATTCACTAGA---AGGAGAGAACAAATGATAT i canFam3.chr3 C 0 C 0 e mm10.chr5 49296142 2 + 151834684 I e papAnu2.chr5 16477562 174 + 178775436 I a score=27603.000000 s hg38.chr4_KI270790v1_alt 197012 13 + 220246 AAG-AAAAAGGAAA s panTro4.chr4 21585962 13 + 193495092 AAG-AAAAAGGAAA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21761445 13 + 198332218 AAG-AAAAAGGAAA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20370792 14 - 85365473 AAGAAAAAAGGAAA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16837553 13 + 184069350 AAG-AAAAAGGAAA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20887385 13 + 189454096 AAG-AAAAAGGAAA i macFas5.chr5 C 0 C 0 s chlSab2.chr27 19960756 13 - 48547382 AAG-AAAAAGAAAA i chlSab2.chr27 C 0 C 0 s canFam3.chr3 3886761 13 - 91889043 AAG-AAAAAACAAA i canFam3.chr3 C 0 I 164 e mm10.chr5 49296142 2 + 151834684 I e calJac3.chr3 21322373 0 - 190850796 C e papAnu2.chr5 16477562 174 + 178775436 I a score=89009.000000 s hg38.chr4_KI270790v1_alt 197025 54 + 220246 TGggccagacacagtggctcacgcctgtaatcccagcactttgggaggctcagg s panTro4.chr4 21585975 54 + 193495092 TGggccagacacagtggctcacacctgtaatcccagcacttcgggaggctcagg i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21761458 54 + 198332218 CGggccggacgcagtggctcacgcctgtaatccctgcactttgggaggctcagg i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20370806 54 - 85365473 TGggccggatgcagtggctcacacctgtaatcccagcactttgggaggctcagg i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16837566 54 + 184069350 CAggttggatgcagtggctcatgcctgtcatcccagctctttggaaggctcagg i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20887398 54 + 189454096 CAggttggatgcagtggctcatgcctgtcatcccagctctttggaaggctcagg i macFas5.chr5 C 0 C 0 s chlSab2.chr27 19960769 54 - 48547382 TGggttggatgcagtggctcacgcctgtaatcccagctctttgggaggctcagg i chlSab2.chr27 C 0 C 0 e mm10.chr5 49296142 2 + 151834684 I e calJac3.chr3 21322373 0 - 190850796 C e canFam3.chr3 3886774 164 - 91889043 I e papAnu2.chr5 16477562 174 + 178775436 I a score=556415.000000 s hg38.chr4_KI270790v1_alt 197079 252 + 220246 taggcagatcatgaggtcaagagattgagaccatcctggccaacatggtgaaa-cttcatctctacaaaaaatacaaaaattagttgggtgtggtgacatgcacctatagtcccagctactcaggaggctgaggcaggagaatcgcttgaacctgggaggtggaggttgcagtgaac---------------------------------tgcagtgaaccaagatcgcgccactgcactccagcctggtgacagagcgagactccgtctcaaa----------------aaaac----aaa--aaaa s panTro4.chr4 21586029 256 + 193495092 tgggcagatcatgaggtcaagagattgagaccatcctggccaacatggtgaaa-ctccatctctactaaaaatacaaaaattagttgggcgtggtgacacgcacgtatagtcccagctactcaggaggctgaggcaggggaatcgcttgaacccgggaggtggaggttgcagtgaac---------------------------------tgcagtgaaccaagatcacgccactgcattccagcctggtgacagagcgagactccgtctcaaa----------------aaaacaaaaaaa--aaaa i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21761512 252 + 198332218 tgggcaaatcatgaggtcaagagattgagaacatcctggccaacacggtgaag-ctccatctctactaaaaatacaaaaattagttgggcatggtgacacgcacctatagtcccagctactcaggaggctgaggcaggagaatcacttgaacccgggaggtggaggctgcagtgaac---------------------------------tgcagtgaaccgagatcgcgccactacactccagcctggtgacagagcgagactccgtctcaaa----------------aaaac----aaa--aaaa i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20370860 250 - 85365473 ggggcggatcatgaggtcaagagattgagaccatcctggccaacatggtgaaa-ccctatctccatgaaaaataaaaaaattagttgggtgtggtgacacacacctgtagtcccagctactcaggaggctgaggcaggagaatcgtttgaacccaggaggtagaggttgcagtgaac---------------------------------tgcagtgagctgagatcgcgccaccacactacagcctggtgacagagcgagactccatctcaaa----------------aaaat------a--aaaa i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16837620 302 + 184069350 tgggcagatcatgaggtcaagagattgagaccatccgggtcaacatggtgaaacccccgtctctactaaaaatacaaaaattagttgggcgtggtgacacgtacctgtagtcccagcaactcatgaggctgaggcaggagaactgcttgaacctgggaggtggaggttgcagtgaactgcagtaattgcttgaactcgggaggaggaggttgcagtgagccgagatagcacccctgcacttcagcctggcaacagagtgagactctgtctcaaacaaagcaaaacaaaacaaaac----aaa--aaaa i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20887452 269 + 189454096 tgggcagatcatgaggtcaagagattgagaccatccgggtcaacatggtgaaacccccgtctctactaaacatacaaaaattagttgggcgtggtgacacgtacctgtagtcccagcaactcatgaggctgaggcaggagaactgcttgaacctgggaggtggaggttgcagtgaac---------------------------------tgcagtgagctgagatctcgccactgcactccagcctggtaacagagtgagactctgtctcaaacaaagcaaaacaaaacaaaac----aaa--aaaa i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16477736 269 + 178775436 tgggcagatcatgaggtcaagagattgagaccatccgggtcaacatggtgaaa-ccccgtctctactaaaaatacaaaaattagttgggcgtggtgacacgtacctgtagtcccagcaactcatgaggctgaggcaggagaactgcttgaacc-gggaggtggaggttgcagtgaac---------------------------------tgcagtgagctgagatctcgccactgcactccagcctggtaacagcgtgagactctgtctcaaacaaagcaaaacaaaacaaaac----aaaacaaaa i papAnu2.chr5 I 174 C 0 s chlSab2.chr27 19960823 268 - 48547382 cgggcagatcatgaggtcaagagattgagaccatcctggccaacatggtgaaa-ccccgtctctactaaaaatacaaaaattagttgggtgtggtgacacgtacctgtagtcccagcaactcaggaggctgaggcaggagaattgcttgaacctgggaggtggaggttgcagtgaac---------------------------------tgcagtgagccgagattgcgccactgcactccagcctggtaacagagcgagactctgtctcaaacaaaacaaaacaaaacaaaac----aaa--aaaa i chlSab2.chr27 C 0 C 0 e mm10.chr5 49296142 2 + 151834684 I e calJac3.chr3 21322373 0 - 190850796 C e canFam3.chr3 3886774 164 - 91889043 I a score=245767.000000 s hg38.chr4_KI270790v1_alt 197331 84 + 220246 aaggaaaaggaaaCAGCAACAAAATGGAAGTTATCACAATATAGTGGTAATATTTAGAATATAAAACTAAAATGTGTAAAAATA s panTro4.chr4 21586285 84 + 193495092 aaggaaaaGGAAACAGCAACAAAATGGAAGTTATCACAATATAGTGGTAATATTTAGAATATAAAACTAAAATGTGTAAAAATA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21761764 84 + 198332218 aaggaaaaggaaaCAGCAACAAAATGGAAGTTATCACAATATAGTGGTAATATTTAGAACATAAAACTAAAATGTATAAAAATA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20371110 84 - 85365473 aaggaaaaTGAAACCGCAACAGAATGGAAGCTCCCACAATATAGTGTtaatatttagaatataaaactaaaatgtataaaaata i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16837922 84 + 184069350 aaGGAAAAGGAAACGGCAGCAAAATGGAAGTTCCCACAATATAGTGttaatatttagaatataaaactaaaatgtataaaaata i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20887721 84 + 189454096 aAGGAAAAGGAAACGGCAGCAAAATGGAAGTTCCCACAATATAGTGTTAATATTTAGAATATAAAACTAAAATGTATAAAAATA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16478005 84 + 178775436 aaggaaaaggaaacggcagcaaaaTGGAAGTTCCCACAATAGAGtgttaatatttagaatataaaactaaaatgtataaaaata i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19961091 84 - 48547382 aaggaaaaggaaaCGGCAGCAAAATGGAAGTTCCCACAATATAGTGTtaatatttagaatataaaactaaaatgtataaaaata i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21322373 79 - 190850796 AAGAAAAAGGAAATGGCAACCAAATGGAAGTTCCCACAATACa-----aatatttagaatataaaactaaaatgtataaaaata i calJac3.chr3 C 0 C 0 e mm10.chr5 49296142 2 + 151834684 I e canFam3.chr3 3886774 164 - 91889043 I a score=290950.000000 s hg38.chr4_KI270790v1_alt 197415 105 + 220246 TAAAACATTTTCATATACTGCTTTGAAAAAGAAATACAGATTAACGAAAAACTGATTTCATTAAGAGATAAAATATATAGGCAAATTTTAATTGGATTCCTTCTG s panTro4.chr4 21586369 105 + 193495092 TAAAACATTTTCATATACTGCTTTGAAAAAGAAATACGGATTAATGAAAAACTGATTTCATTAAGAGATAAAATATATAGGCAAATTTTAATTGGATTCCTTCTG i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21761848 105 + 198332218 TAAAACATTTTCATATACTGCTTTAAAAAAGAAATATAGATTAATGAAAAACTGATTTCATTAAGAGATAAAATATATAGGCAAATTTTAACTGGATTCCTTCTG i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20371194 105 - 85365473 taaaaCATTTTCATATACTGCTTTGAAAAAGAAATATAGATTAATGAAAAACTGATTTCATTAAGAGATAAAATATATAGGCAAATCTTAATTGGATTCCTTCTG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16838006 105 + 184069350 taaaatattttCATATACTGCTTTGAAAAAGAAATATAGATTAATAAAAAGCTGATTTCATTAAGAGATAAAATATATAGGCAAATTTTAATTGGGTTCCTTCTG i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20887805 105 + 189454096 TAAAATATTTTCATATACTGCTTTGAAAAAGAAATATAGATTAATAAAAAGCTGATTTCATTAAGAGATAAAATATATAGGCAAATTTTAATTGGGTTCCTTCTG i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16478089 105 + 178775436 taaaatattttcatatactgctttgaaaaagaaatatagattaataaaaaaCTGATTTcattaagagagaaaatatataggCAAATTTTAATTGGGTTCCTTCTG i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19961175 105 - 48547382 taaaaCATTTTCATATGCTGCTTTGAAAAAGAAATATAGATTAATGAAAAACTGATTTCATTAAGAGATAAAATATATAGGCAAATTTTAATTGGGTTCCTTCTG i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21322452 77 - 190850796 taaaaCATTTTCGTAC------------------------TTCATGAAAAACTGAT----TTAAGAGATAAAATATATAGGCAAATTTTAATTGGATTTCTTCTG i calJac3.chr3 C 0 C 0 s canFam3.chr3 3886938 48 - 91889043 TGCAGTATTTT--TATACTGCTTTTG-----------------------------------CAAAAAATGTAACATATAGACAAA-------------------- i canFam3.chr3 I 164 C 0 e mm10.chr5 49296142 2 + 151834684 I a score=546031.000000 s hg38.chr4_KI270790v1_alt 197520 181 + 220246 TTA-CTGTTTTTCATATTGTTTTTGCAGAAAAGTAACATGCAGACAAAAAGG-GAACTAATGAACCTGTGATGTGCATTTCCCTGAGCAGTTCCAGGACTGTGAAATCCCAATGATATCTACT-------TATTCTctatgggaaaggcaccaggatgagaaattctcctgaac-tgtatgaactaatctt s panTro4.chr4 21586474 181 + 193495092 TTA-CTGTTTTTCATATTGTTTTTGCAGAAAAGTAACATGCAGACAAAAAGG-GAACTAATGAACCTGTGATGTGCATTTCCCTGAGCAGTTCCAGGACTGTGAAATCCCAATGATATCTACT-------TATTCTctatgggaaaggcaccaggatgagaaattctcctgaac-tgtatgaactaatctt i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21761953 172 + 198332218 TTG-CTGTTTTTCATATTGTTTTTGCAGAAAAGTAACATGCAGACAAAAAGG-GAACTAATGAACCTGTGATGTGCATTTCCCTGAGCAGTTCCAGAACTGTGAAATACCAATGATATCTACT-------TATTCTCTATGGGAAAGGCACCAGGATGAGAAATTA----------GTATGAACTAATCTT i ponAbe2.chr4 C 0 I 293 s nomLeu3.chr20 20371299 181 - 85365473 TTATTTGTTTTTCATATTGTTTTTGCAGAAAAGTAACATACAGACAAAAAGG-GAAGTAATGAACCTGTGAGGTGCATTTCTCT-AGCAGTTCCAGGACTGTGAAATACCAATGATATCTACT-------TATTCTctatgggaaaggcactaggatgagaaattctcctgaac-tgtatgaactgatctt i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16838111 177 + 184069350 TTA-TTGTTTTTCATATTGTTTTTGCAGAAAAGTAACATACAA----AAAGA-GAAGTAATGAACCTGTGATGTGTATTTCCCTGAGCAGTTCCGGGGCTGCGAAATACCAATGATATCTACT-------TATTCTCTATGGGAAAGGCAGCAGGATGAGAAATTCTCCTGAAC-tgtatgaactaatctt i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20887910 177 + 189454096 TTA-TTGTTTTTCATATTGTTTTTGCAGAAAAGTAACATACAA----AAAGA-GAAGTAATGAACCTGTGATGTGTATTTCCCTGAGCAGTTCCGGGGCTGCGAAATACCAATGATATCTACT-------TATTCTCTATGGGAAAGGCAGCAGGATGAGAAATTCTCCTGAAC-tgtatgaactaatctt i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16478194 177 + 178775436 TTA-ttgtttttcatattgtttttgcAGAAAAGTAACATACAA----AAAGA-GAAGTAATGAACCTGTGATGTGTATTTCCCTGAGCAGTTCCGGGGCTGCGAAATACCAATGATATTTACT-------TATTCTCTATGGGAAAGGCAGCAGGATGAGAAATTCTCCTGAAC-TGTATGAACTAATCTT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19961280 181 - 48547382 TTA-TTGTTTTTCATATTGTTTTTGCAGAAAAGTAACATACAGACACAAAGA-GAAGTAATGAACCTGTGATGTGCATTTCCCTGAGCAGTTCCGGGGCTGCGAAATACCAATGATATCTACT-------TATTCTCTATGGGAAACGCACCAGGATGAGAAATTCTCCTAAAC-tgtatgaactaatctt i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21322529 177 - 190850796 TCA-----CTTTCATATTATTTTGGCAGAAAAGTATCATACAGACAAACAGG-AAAGTAATGACCCTATGATGTGCATTTCCCTGAGAAGTTCCAGGACTTCAAaataccagtgatatctatt-------tattctctatgggaaaggcaccagaatgagagattttcctgaac-tatatgaactaatatt i calJac3.chr3 C 0 C 0 s mm10.chr5 49296144 180 + 151834684 TTT-CTGCTTTTCA-AATGTTTGAGATGAAGTGTAACATCGAGTCAAAGAGGAAAAATAATGGGGTTGTGA--CACAATAGCCAAAGAAGCTCCATGACAAGAAAATATTAAAGGCTCCTGCT-------TTATCTCTAAAGGCAGGACACAGGATCAAACAAATGTCCTGAACTTTTTTAAACTGATCTT i mm10.chr5 I 2 I 32 s canFam3.chr3 3886986 135 - 91889043 ------------------------------------------------AGGA-AAAATAATGAGTCTATGATGTGAACTTTCCTTAGAAATTCTATGCTTGCAAAATACCAACTGTATctattcgttgaatatgctttctgggcagggcaccattgtgaaaaattttgttgagt-t-----acctaattt- i canFam3.chr3 C 0 C 0 a score=2089985.000000 s hg38.chr4_KI270790v1_alt 197701 632 + 220246 cacagg-----aaacttttt----------------------------aagtag---gttttattatcc-ttcaaaaaggataggaaaactgaggctgggaagggttaagtaactggcctat-actcattgcagca-t-aagtatcacagcttaaatgtgttc----cattctttgcctga-cccca-aacctgtgctctAAAGCATTGTGGAACATCAAAAGCC---TCTCTGCCTTCCCTACA------------------------------------------GTCCAAAAATT-------------------------------------------CTCAATTTTCTA-CTATGGGAGCTATTAAAATTACACTAGATAAA-CCTGTATTTTAAAAGTATTCAAAACAAAACACAACACACTTACTTAGAGCaataataataaatattacagaataatataatCCTTCCCGTTCTAAAATATTTTTAAAGAATATGATAACTTTATATTGGGTCCTAGATACCATACTGTATTTAGGGAATTTACCAAGATAGAGCTGGCTTTATTGTAAGTCAAGCAAAATGAACTGGCGTTCTTGTAAGCTGGGTT-CAGTCTA--CTAT-TATCGGTTCTGTACAGTGTCTCCTCGTGTGCTAGTGAAACAGGAT---GGGGGGCGAGGAACCTCCTTCCCATCTTTTACTAGCCTGAGAAGTATCTTTTCAATATTTT------ATAATTTTGCCTTTGGCAAAGGGCTGCTTATCTCCTGG s panTro4.chr4 21586655 631 + 193495092 cacagg-----aaacttttt----------------------------aagtag---gttttattatcc--tcaaaaaggataggaaaactgaggctgggaagggttaagtaactggcctat-actcattgcagca-t-aaatatcacagcttaaatgtgttc----cattctttgcctga-cccca-aacctgtgctctAAAGCATTGTGGAACATCAAAAGCC---TCTCTGCCTTCCCTACA------------------------------------------GCCCAAAAATT-------------------------------------------CTCAATTTTCTA-CTATGAGAACTATTAAAATTACACTAGATAAA-CCTCTATTTTAAAACTATTCAAAACAAAACACAACACACTTACTTAGAGCAATAATAATAAATATTACAGAATAATATAATCCTTCCCGTTCTAAAATATTTTTAAAGAATATGATAACTTCATATTGGGTCCTAGATACCATGCTGTATTTAGGGAATTTACCAAGATAGAGCTGGCTTTATTGTAAGTCAAGCAAAATGAACTGGCATTCTTGTAAGCCAGGTT-CAGTCTA--CTAT-TATCAGTTCTGTACAGTGTCTCTTCGTGTGCTAGTGAAACAGGAT---GGGAGGCGAGGAACCTCCTTCCCATCTTTTACTAGCCTGAGAAGTATCTTTTCAATATTTT------ATAATTTTGCCTTTGGCAAAGGGCTGCTTATCTCCTGG i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21762418 632 + 198332218 cacagg-----aaacttttt----------------------------aagtag---gttttattatcc-ttcaaaaagcataggaaaactgaggctgagaagggttaagtaactggcctat-actcatcgcagca-t-aagtatcataccttaaatgtgttt----cattctttgcctga-ccccg-aacctgtgctctGAAGCATTGTGGAACATCAAAACCC---TCTCTGCCTTCCCTACA------------------------------------------GCCCAAAAATT-------------------------------------------CTCTATTTTCTA-CTATGGGAGCTATTAAAATTACACTAGATAAA-CCTCTATTTTAAAAGTATTCAAAACAAAACACAACACACTTGCTTAGAACAATAATAATAAATATTACAGACTAATATAATCCTTCCTGTTCTAAAATATTTTTAAAGAATATGATAACTTTATATTGGGTCCTAGATACCATACTGTATTTAGGGAATTTACCAAGATAGAGCTGGCTTTATTGTAAGTTAAGCAAAATGAACTGGCCTTCTTGTAAACTGGGTT-CAGTCTA--CTAT-TATCGGTTCTGTACAGTGTCTCCTCATGTGCTAGTGAAACAGGAT---GGGGGGTGGGGAACCTCCTTCTCATCTTTCACTAGCCTGAGAAGTATCTTTTCAATATTTT------ATAATTTTGCCTTTGGCAAAGGGCTGCTTATCTCCTGG i ponAbe2.chr4 I 293 C 0 s nomLeu3.chr20 20371480 633 - 85365473 cacagg-----aaatttttt----------------------------aagtag---gttttattatcc-ttcaaaaaggataggaaaactgaggctgggaagaggtaagtaactggcctataactcattgcagca-t-aagtatcataccttaaatgtgttc----cattctttgcctga-cccca-aacctgtgctctGAAGCATTGTGGAACATCAAAACCC---TCTCTGCCTTCCCTACA------------------------------------------GCCCAAAAATT-------------------------------------------CTCAATTTTCTA-CTATGGGAGGTATTAAAATTACACTAGATAAA-CCTCTATTTTAAAAGTATTCAAAACAAAACACAACACACTTGCTTAGAACAATAATAATAAACATTACAGAATAATATCATCCTTCTCATTCTAAAATATTTTTAAAGAATATGATAACTTTATATTGGGTCCTAGATACCATACTGTATTTAGGGAATTTACCAAGATAGAGCTGGCTTTATTGTAAGTTAAGCAAAATGAACTGGCTTTCCTGTAAGCTAGGTT-CAGTCTA--CGAT-TATCGGTTCTGTACAGGGTCTCCTCGTGGGCTAGTGAAACAGGAT---GGGGGGCGGGGAACCTCCTTCCCATCTTTCACTAGCCTGAGAAGTATCTTTTCAATATTTT------ATAATTTTGCCTTTGGCAAAGGGCTGCTTATCTCCTGG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16838288 635 + 184069350 cacagg-----aaacttttt----------------------------aagtag---gttttatcatcc-ttcaaaaaggataggaaaactgaggctgggaagagttaagtaactggcctat-actcattgcagca-t-aagtatcatactttaaatgtgttc----tattctttgcctga-cccca-aaccggtgctctgaagcattgtgGAACATCAAAACCC---TCTCTGCCTTCCCTACA------------------------------------------GCCCCCAAATT-------------------------------------------CTCCATTTTCTA-CTATGGGAGCTATTAAAATTACACTAGATAAA-TCTCTATTTTAAAAGTATTCAAAACAAAACACAACACACTTGCTTAGAACAATAACAATAAATATTACAGAATAATATCATCCTTCCCATTCTAAAATATTTTTAAAGAATATGATAACTTTATATGGGGTCCTAGATACCATACTGTATTTAGGGAATTTACCAAGATGGAGCTGGCTTTACTGTAAGTCAAGCAAAATGAACTGGCTTTCTCATAAGCTGGGCT-CAGTCTA--CTAT-TATTAGTTCTATATAGTGACTCCTCATGTGCTAGTGAAACAGGATGGTGGGGGGCGGGGAACCTCCTTCCCATCTTTCACTAGCCTGAGAAGTATCTTTTCAATATTTT------ATAATTCTGCCTTTGGCAAAGGGCTGCTTATCTCCTGG i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20888087 635 + 189454096 cacagg-----aaacttttt----------------------------aagtag---gttttatcatcc-ttcaaaaaggataggaaaactgaggctgggaagggttaagtaactggcctat-actcattgcagca-t-aagtatcatactttaaatgtgttc----tattctttgcctga-cccca-aaccggtgctctgaagcattgtgGAACATCAAAACCC---TCTCTGCCTTCCCTACA------------------------------------------GCCCCCAAATT-------------------------------------------CTCCATTTTCTA-CTATGGGAGCTATTAAAATTACACTAGATAAA-TCTCTATTTTAAAAGTATTCAAAACAAAACACAACACACTTGCTTAGAACAATAACAATAAATATTACAGAATAATATCATCCTTCCCATTCTAAAATATTTTTAAAGAATATGATAACTTTATATGGGGTCCTAGATACCATACTGTATTTAGGGAATTTACCAAGATGGAGCTGGCTTTACTGTAAGTCAAGCAAAATGAACTGGCTTTCTCATAAGCTGGGCT-CAGTCTA--CTAT-TATTAGTTCTATATAGTGACTCCTCATGTGCTAGTGAAACAGGATGGTGGGGGGCGGGGAACCTCCTTCCCATCTTTCACTAGCCTGAGAAGTATCTTTTCAATATTTT------ATAATTCTGCCTTTGGCAAAGGGCTGCTTATCTCCTGG i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16478371 635 + 178775436 CACAGG-----AAACTTTTT----------------------------AAGTAG---GTTTTATCATCC-TTCAAAAaggataggaaaactgaggctgggaagggttAAGTAACTGGCCTAT-ACTCATTGCAGCA-T-AAGTATCATACTTTAAATGTGTTC----TATTCTTTGCCTGA-CCCCA-AACCGGTGCTCTGAAGCATTGTGGAACATCAAAACCC---TCTCTGCCTTCCCTACA------------------------------------------GCCCCCAAATT-------------------------------------------CTCCATTTTCTA-CTATGGGAGCTATTAAAATTACACTAGataaa-tctctattttaaaagtattcaaaacaaaacacaacacactTGCTTGgaacaataacaataaatattaCAGAATAATATCATCCTTcccattctaaaatatttttaaagaatatgatAACTTTATATGGGGTCCTAGATACCATACTGTATTTAGGGAATTTACCAAGATGGAGCTGGCTTTACTGTAAGTCAAGCAAAATGAACTGGCTTTCTCATAAGCTGGGCT-CAGTCTA--CTAT-TATTAGTTCTATATAGTGACTCCTCGTGTGCTAGTGAAACAGGATGGCGGGGGGCGGGGAACCTCCTTCCCATCTTTCACTAGCCCGAGAAgtatcttttcaatatttt------agaaTTCTGCCTTTGGCAAAGGGCTGCTTATCTCCTGG i papAnu2.chr5 C 0 M 50 s chlSab2.chr27 19961461 635 - 48547382 cacagg-----aaacttttt----------------------------aagtag---gttttattatcc-ttcaaaaaggataggaaaactgaggctgggaagggttaagtaactggcctat-actcattgcagca-t-aagtatcataccttaaatgtgttc----tattctttgcctga-cccca-aaccggtgctctgaagcattgtAGAACATCAAAACCC---TCTCTGCCTCCCCTACA------------------------------------------GCCCCCAAATT-------------------------------------------CTCCATTTTCTA-CCATGGGAGCTATTAAAATTACACTAGATAAA-CCTCTATTTTAAAAGTATTCAAAACAAAACACAACACACTTGCTTAGaacaataacaataactattacagaataatatcaTCCTTCCCATTCTAAAATATTTTTAAAGAATATGATAACTTTATATGGGGTCCTAGATACCATACTGTATTTAGGGAATTTACCAAGATGGAGCTGGCTGTATTGTAAGTCAAGCAAAACGAACTGGCTTTCTCATAAGCTGGGCT-CAGTCTA--CTAT-TATTAGTTCTATATAGTGACTCTTCGTGTGCTAGTGAAACAGGATGGCGGGGGGCGGGGAACCTCCTTCCCATCTTTCACTAGCCTGAGAAGTATCTTTTCAATATTTT------ATAATTCTGCCTTTGGCAAAGGGCTGCTTATCTCCTGG i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21322706 606 - 190850796 cacagg-----aaacttctt----------------------------aagtag---gttttattatcc-ttcaaaaaggatagggaaactgaggctgg-------tcagtaactgacctgt-attcactgcagcA-T-AAATATCACATCTTAAATGTGTTC----CATTATTTCCCT--------------ATGCTCTGAAGCATTATGGAACATCAAAATCC---TCTCTGCCTTTTCTACA------------------------------------------GCCCCAAAAGT-------------------------------------------TTCCATTCTCTA-CTATTAGAGCTACTAAAATTACAATAGATAAA-CCTCTATTTTAAAAGTTTTCAAAACAAAACATAACACACTTGTTTCAAACAAG---AATAAATATTACAGAATAAT---ATTCTTTCCATTCTAAAATATTTTTAAAGAATATGATCACTTTATATTGGGTCCTAGATACCATACTTTATTTAGGAAATTTACCAAGAAAGAGCTGCCTTTATGGTAAGTAAAGCAAAATGAACTGGCTTTCTAGTAAGCTGGGTT-CAGTCTA--CTAT-TATTGGTTCCATACAGTGTCTCCTTGTGTACTAGAGAGATGGGAT---GAGGGGTGGGGAACTTCCTTCCTATCTTTCACTAGCTC-AGAAGTATCTTTTCAATATTTT------ATAATTTTGCCTTTGGCAAAGGGCTGCTTATCTCCTGG i calJac3.chr3 C 0 C 0 s mm10.chr5 49296356 633 + 151834684 cacagacacacagactctctctctctctctctctctctctctctctAAAAGTGGATAGTTTTAT--TCC-ACAAAAAAGGATAGGATGAATGCAGGTGAAAAAGATCAAACAATTTACCCAT-ATTAAATTCAGAATT-AAGTATCACATATTAAATGTGTTTGGCAGGTTTTTTTCCTGATCTTTA-GAGTCATGCTTTGAAGAACTGTTGGATATCATAGCCTGCATCTCTGCCTCCTATACAAGCAGACCCCACAAACTCACATTACATACTGATTTGGGTTACACCCTATAATT-------------------------------------------ATCCTTTTACTG-CTGTGGACTCCATCAAAACCACAATAGATAAA-----TGTTTTTAATATATTTTGAACAAAAAATATGAC-----TTAAGATTGATTATAACA-----TTTTGATTTATAAAAATTTTCCCATTCTAAAATATTTTTAA--AAGATGGGGATTTAAAAAGGTGTCCTAGAAACTATTC-----CTAAGGAACTTAGAAAGGTACAGTTG----------------AGCAAATTAAGTGCGTTTTCTTATGAATTGTGTTGTTATCCA--ATATCTATTGGTATTCCATATAGTATTTTTCTATGCAAATGTACCAGGCT---GTGA--------------CTCACATTTTC----------------------------------------AACTCTACC-TTGGTAAAGAGATGCTTGTTTTCTGG i mm10.chr5 I 32 C 0 s canFam3.chr3 3887121 647 - 91889043 cggaag-----agacttttc----------------------------aggtag---gccttcttgtccccccaaaaaagatggagaaactgaagctgagaaagat----taactcccctaa-attcaTTGTGGTA-TGAAGTATCCCATTGTAAATGTGTTC----CA--CTTTGTCTGA-TCCTGCAGCACTTGCTCCAAGGGGTCATGGAATGTGATAACCCACCTCTCTGCTTCCTGTGAA------------------------------------------GGCCAAAAGATCCATGAAGGTCAGTCATTTGGGTTAGAACCCTGAATCCCGCCCCCCCTTTATCTATTTATGGGAGTCATGAAATTTATAACAAATAAGCCCTATGTTTTAAAAATATTCAAAGCAAAAGTTAATACAATTGCTTAGAAAAAGGTTAACAAACAATATTAAATAATACTATCTTTACTATTAAGAAACATTTTTAATGGATA-AATAATTTTATATAGGGCCCTA-----CATACATCATTTAAGGAATTTTACAAGATAGAGCTT----------------AACGAACTGAGCAGGA---CTTATTAATTTTATT-CAGTTAAGTCTAC-CTTTGGTGCTGTAAAGT-----CTCGTGTGTCAGTGAAAATGGAA-----------AAGGTTTTCCCTCCAATCTTTCATCAGTCTGAGAAGTATGTTTTTCGTGGTTTATTTTAATAATTTTGCCTTTAGCAAAGCACACATTATTTCATGA i canFam3.chr3 C 0 C 0 a score=845047.000000 s hg38.chr4_KI270790v1_alt 198333 328 + 220246 GAATTCAGGCACATTTTGAAGATTTCCCCATAGCCAATGAGCACAGAATGATTATTCTCA--CAAAAGTTCTTAAGAAATGTCACCTCTCTTGTGTCTCCTTCTTTCTAGATAAGCTCTCCCCAC----ACCTTTCTCCTGAGAC-AGTCTAGAATCTCCC-TTTTATATTGCTGCAGAAACACAGACTCATTTCCATACACGTTTACTCCGGCACCTATAGCATAGATCAAT-GCTATGGACACGTGCTGTTGTGTGAGATTTAA----AAGTAAATTTTCCATTC---AGAGATT------------------TTTAAAAAAAAAAATCTGGTCATAGCAGCCATTAGTCAACTTA--GTCT s panTro4.chr4 21587286 328 + 193495092 GAATTCAGGCACATTTTGAAGATTTCCCCATAGCCAATGAGCACAGAATGATTATTCTCA--CAAAAGTTCTTAAGAAATGTCACCTCTCTTGTGTCTCCTTCTTTCTAGATAAGCTCTCCCCAC----ACCTTTCTCCTGAGAC-AGCCTAGAATCTCCC-TTTTATATTGCTGCAGAAACACAGACTCATTTCCATACACGTTTACTCCGGCACCTATAGCATAGATCAAT-GCTATGGACACGTGCTGTTGTGTGAGATTTAA----AAGTAAATTTTCCATTC---AGAGATT------------------TAAAAAAAAAAAAATCTGGTCATAGCAGCCATTAGTCAACTTA--GTCT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21763050 324 + 198332218 GAATTCAGGCACATTTTGAAGATTTCCCCACAGCCAATGAGCACAGAATAATTATTCTCA--CAAAAGTTCTTAGGAAATGTCGCCTCTCTTGTGTCTCCTTTTTTCTAGATAAGCTCTCCCCAC----ACCTTTCTCCTGAGAT-AGTCTAGAATCTCCCTTTTTATATTGCTGCAGAAACACAGATTCATTTCCACACACGTTTACTCCGGCACCTATAGCATAGATCAAT-GCTATGAACAAGTGCTATGGTGTGGGATTTAA----AAGTAAATTTTCCATTC---AGAGATT------------------TTT-----TTTTAATCTGATCATAGCAGCCATTAGTCAACTTA--GTCT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20372113 327 - 85365473 GAATTCAGGCACATTTTGAAGATTTCCCCATAGCCAATGAGCACACAATGATTATTCTCA--CAAAAGTTCTTAGAAAATGTCGCCTCTCTTGTGTCTCCTTCTTTCTAGATAAGCTCTCCCCAC----ACCTTTCTCCTGAGAT-AGCCTAGAATCTCCCTTTTTATATTGCTGCAGAAACACAGATTCATTTCCACACAGGTTTACTCTGGCACCTATAGTATAGATCAAT-GCTATGGACAAGTGCTGTTGTGTGGGATTTAA----AAGTAAATTTTCCATTC---AGAGATT------------------TTT--TTTTAAAAATCTGGTCATAGCAGCCATTAGTCAACTTA--GTCT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16838923 337 + 184069350 GCATTCAGGCACATTTTGAAGATTTCCCCACAGCCAATAAGCACAGAATGATTATTCTCA--CAAAAGTTCTTAGGAAATGTCGCCTCTCCTGTGTCTCCTTCTTTCTAGATAAGCTCTCCCTAC----ACCTTTCTCCTGAGAT-AGCCTAGAATCTCCCTTTTTACATTGCTGCAGAAACACTGATTCATTTCCATAAATGTTTACTCCAGCACCTATAGCATAGAGCAAT-GCTATGGACAAGTGCCGTTGTGTGGGATTTAA----AAGTACATTTTCCCTTC---AGAGATT------------aaaaaaaaaaaaaaaaaaaaGCTGGTCATAACAGCAATTAGTCCAGTTGTTGTCT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20888722 334 + 189454096 GCATTCAGGCACGTTTTGAAGATTTCCCCACAGCCAATAAGCACAGAATGATTATTCTCA--CAAAAGTTCTTAGGAAATGTCGCCTCTCCTGTGTCTCCTTCTTTCTAGATAAGCTCTCCCTAC----ACCTTTCTCCTGAGAT-AGCCTAGAATCTCCCTTTTTACATTGCTGCAGAAACACTGATTCATTTCCATAAATGTTTACTCCAGCACCTATAGCATAGAGCAAT-GCTATGGACAAGTGCCGTTGTGTGGGATTTAA----AAGTACATTTTCCCTTC---AGAGATT---------------aaaaaaaaaaaaaaaaaGCTGGTCATAACAGCAATTAGTCCAGTTGTTGTCT i macFas5.chr5 C 0 C 0 s chlSab2.chr27 19962096 349 - 48547382 GCATTCAGGCACATTTTGAAGATTTTCCCACAGCCAATAAGCACAGAATGATTATTCTCA--CAAAAGTTCTTAGGAAATGTCACCTCTCCTGTGTCTCCTTCTTTCTAGATAAGCTCTCCCTAC----ACCTTTCTCCTGAGAT-AGCCTAGAATCTCCCTTTTTACATTGCTGCAGAAACACAGATTCATTTCCATAAATGTTTACTCCAGCACCTATAGCATAGATCAAT-GCTGTGGACAAGTGCCGTTGTGTGGGATTTAA----AAGTACATTTTCCCTTC---AGAGATTaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaGCTGGTCATAGCAGCAATTAGTCCAGTTGTTGTCT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21323312 328 - 190850796 GCATTCAGGCACATCTTGAAGATTACCCCATAGCCAGTGAGAACAGATGGATTATTCTCA--CAAAAGTTCTTAGGAAATGTCACCTCTCTTGTGACTTCTTCTTTCTAGATAAGCTCTCCCCAT----ACCTTTCTCCTGAGAT-AGCCTAGAATCTCTATTTTTATATTGCTGCAGAAACACAGATTCATTTCCAT----GTTTACTCCGGCACCTATAGCAGGGACCAAT-GCTATGGAGAAGTGCTACTGTGTGGGATTTAAAAGTAAGTAAATTTTCCATTC---AGAGATT------------------TTT-TTTTTTTTAATTTGGTCATAGCAGCCATTAGTCAACTTA--GAAT i calJac3.chr3 C 0 I 322 s mm10.chr5 49296989 289 + 151834684 GCATTT--GTATACTTTAAAGATTTGCCTAAAAC---TGAGGACAGAAGGATT---------CTACATTGCTTCAAG--------TTCTGTCATGTGAGCTTCTCTATAGGTAAGCTCTCTCTCCCACTGTCTTTGTCTTGAGAC-AGTCTAAAGTTTCTCTCTTTATTTTGCTACTGAAGCCCAAATTCACCTCTACTGATGCTTGTTCCAGCTTCCACAGCA-----CAGT-GCTG------------GTTATATGGGCTCTGA----GAACGAGGTTTTCACAA---AGATGTC------------------TGT------AAACGTATGGCCTCAGT-GCCATTAAGCAATata--attt i mm10.chr5 C 0 C 0 s canFam3.chr3 3887768 322 - 91889043 GCATTGGGCCACATTTTGAAGATTTAGCCAGAGATTATGAGCACAGATGGATTTTTCTTATGCTATAGTTCCCAAGA-------CCTCTCTCATTTAACCTACTCTCTAGATAAACTCTCCCCAT----AACTTTCTCCTGAGATAAGCGTAGCATCTCCA-TTTTATTCTGCTGCTGAAACACAGACTCATTTCCACAAATGTTTGCTCTGGAACTGACAGCACAGACAAATCACCATGGACAGCTGCTGTTGTGTGGGATTTAA----GAGCATTTTTTTTTTTCTTTGGAGAAC------------------TGA------AAAACTCTGGCCATAGCAGCAATTAGCCAACTTA--GTCT i canFam3.chr3 C 0 C 0 e papAnu2.chr5 16479006 50 + 178775436 M a score=11716.000000 s hg38.chr4_KI270790v1_alt 198661 4 + 220246 TCAT s panTro4.chr4 21587614 4 + 193495092 TCAT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21763374 4 + 198332218 TCAT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20372440 4 - 85365473 TCAT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16839260 4 + 184069350 TCAT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20889056 4 + 189454096 TCAT i macFas5.chr5 C 0 C 0 s chlSab2.chr27 19962445 4 - 48547382 TCAT i chlSab2.chr27 C 0 C 0 s mm10.chr5 49297278 4 + 151834684 tctt i mm10.chr5 C 0 I 2 s canFam3.chr3 3888090 4 - 91889043 TCAT i canFam3.chr3 C 0 C 0 e calJac3.chr3 21323640 322 - 190850796 I e papAnu2.chr5 16479006 50 + 178775436 M a score=43512.000000 s hg38.chr4_KI270790v1_alt 198665 17 + 220246 TGCCCTCCTTTTTATTT s panTro4.chr4 21587618 17 + 193495092 TGCCCTCCTTTTCATTT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21763378 17 + 198332218 TGCCCTCCTTTTTATTT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20372444 17 - 85365473 TGCCCTCCTTTTTATTT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16839264 17 + 184069350 TGCCCTCCTTTTTATTT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20889060 17 + 189454096 TGCCCTCCTTTTTATTT i macFas5.chr5 C 0 C 0 s chlSab2.chr27 19962449 17 - 48547382 TGCCCTCCTTTTTATTT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21323962 17 - 190850796 TGCCCTCCTTTTTATTT i calJac3.chr3 I 322 C 0 s mm10.chr5 49297284 15 + 151834684 tttctccctctgtct-- i mm10.chr5 I 2 C 0 s canFam3.chr3 3888094 13 - 91889043 TCTCCTCCTATTT---- i canFam3.chr3 C 0 C 0 e papAnu2.chr5 16479006 50 + 178775436 M a score=12281.000000 s hg38.chr4_KI270790v1_alt 198682 3 + 220246 CTA s panTro4.chr4 21587635 3 + 193495092 CTA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21763395 3 + 198332218 CTA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20372461 3 - 85365473 CTA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16839281 3 + 184069350 CTA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20889077 3 + 189454096 CTA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16479056 3 + 178775436 CTA i papAnu2.chr5 M 50 C 0 s chlSab2.chr27 19962466 3 - 48547382 CTA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21323979 3 - 190850796 CTA i calJac3.chr3 C 0 C 0 s mm10.chr5 49297299 3 + 151834684 ctg i mm10.chr5 C 0 I 40 s canFam3.chr3 3888107 3 - 91889043 CTT i canFam3.chr3 C 0 C 0 a score=244755.000000 s hg38.chr4_KI270790v1_alt 198685 80 + 220246 AGCATGATTCATTCAGGATATAAGA---TTGCATGGGCAATCATTCTAGT-----------------------ATTAAACACCTTGGAA-AGATGAGGACCATCttc s panTro4.chr4 21587638 80 + 193495092 AGCATGATTCATTCAGGATATAAGA---TTGCATGGGCAATCATTCTAGT-----------------------ATTAAACACCTTGGAA-AGATGAGGACCATCTTC i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21763398 80 + 198332218 AGCATGATTCATTCAGGATATAAGA---TTGCATGGGCAATCATTCTAGT-----------------------ACTAAACACCTTGGAA-AGATGAGGACCATCTTC i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20372464 80 - 85365473 AGCATGATTCATTCAGGATATAAGA---TTGCATGGGCAATCATTCTAGT-----------------------ATTAAACACCTTGGAA-AGATGAGGACCATCTTC i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16839284 106 + 184069350 AGCATGATTCATTCAGGATATAAGATTGTTGCATGGACAATCATTCCAGTACATGTCCATTCTATGGACAATCATTAAACACCTGGGAA-AGATGAGGACCATCTTC i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20889080 103 + 189454096 AGCATGATTCATTCAGGATATAAGA---TTGCATGGACAATCATTCCAGTACATGTCCATTCTATGGACAATCATTAAACACCTGGGAA-AGATGAGGACCATCTTC i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16479059 103 + 178775436 AGCATGATTCATTCAGGATATAAGA---TTGCATGGACAATCATTCCAGTACATGTCCATTCTATGCACAATCATTAAACACCTGGGAA-AGATGAGGACCATCTTC i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19962469 103 - 48547382 AGCATGATTCATTCAGGATATAAGA---TTGCATGGACAATCACTCCAGTACATGTCCATTCCATGGACAATCATTAAACACCTGGGAA-AGATGAGGACCATCTTC i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21323982 79 - 190850796 AGCATGCCTCATTCAGGATAT-AGA---TTGCATGGGCAATCATTCTAGT-----------------------ATTGGACACCTTGGAA-AGAGGAGGACTATCTTC i calJac3.chr3 C 0 C 0 s canFam3.chr3 3888110 76 - 91889043 CACATTCTTGAATCAGAAGATAAGG---TTGCATTGGCATTCCTTCAATC-----------------------ATTGGACACGTtagaagaagcaaagatcg----- i canFam3.chr3 C 0 C 0 e mm10.chr5 49297302 40 + 151834684 I a score=1311906.000000 s hg38.chr4_KI270790v1_alt 198765 413 + 220246 ttcctccctgtgtctgcttctctttctgt-----tccatct--------------------tctttccttccccatttctttcactctttccttcCCTGTCCAGGTCCTGTTGAAT-------------------GCTgactcag-----gccatctgtgc----------------tttccaggccagctctttcactta-----ttgctcatgattttggccaagcca-tttaaaatgcctaggcctcaatttcctcatgggtaaaggaagctaataaggtctacctaatggaccc--------------------acccaataaaattct---tttgagaattaagtg-gga-aa--------------------atgtatattaaacacattggaa--a--ttCTTGTCTACAGGGGATATGTCATCAATGGGAGTTGTTACTGCTGCTGTTTCT-ACTAGATTCCAAATTGAGAA-GAAAATCTTTCTAAAGCAAGTATCAAGTAGAGTCAGGAGGAAGCATCTAAAGTT s panTro4.chr4 21587718 413 + 193495092 TTCCTCCCTGTGtctgcttctctttctgt-----tccatct--------------------tctttccttctccatttctttcactctttccttcccTGTCCAGGTCCTGTTGAAT-------------------GCTgactcag-----gccatctgtgc----------------tttccaggccagctctttcactta-----ttgctcatgattttggccaagcca-tttaaaatgcctaagcctcaatttcctcatgggtaaaggaagctaataaggtctacctaatggaccc--------------------acccaataaaattct---tttgagaattaagtg-gga-aa--------------------atgtatattaaacacattggaa--a--ctCTTGTCTACAGGGGATATGTCATCAATGGGAGTTGTTACTGCTGCTGTTTCT-ACTAGATTCCAAATTGAGAA-GAAAATCTTTCTAAAGCAAGTATCAAGTAGAGTCAGGAGGAAGCATCTAAAGTT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21763478 410 + 198332218 TTCCTCCCTGTGTATGATTCTC--TCTGT-----TCCATCT--------------------TCCTTCCTTCCCCACTTCCTGCACTCTTTCCTTCCCTGTCCAGGTCCTGTTGAAT-------------------GCTGACTCAG-----TCCATCTGTGC----------------Tttccaggccagctctttcactta-----ttgctcatgattttggcgaagcca-ttgaaaatgtctaagcctcaatttcctcatgggtaaaggaagctaataaggtctacctaatggaccc--------------------actcaataaaattc----tttgagaattaagtg-gga-aa--------------------atgtatattaaacacattggaa--a--ctCTTGTCTACAGGGGATATGTCATCAATGGGAGTTGTTACTGCTGCTGTTTCT-ACTAGATTCCAAATTGAGAA-GAAAATCTTTCTAAAGCAAGTATCAAGTAGAGTCAGGAGGAAGCACCTAAAGTT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20372544 412 - 85365473 TTCCTCCCTGTGTCTGATTCtctttctgt-----tccatct--------------------tctttccttccccatttccttcactctttccttccCTGTCCGGGT-CTGTTGAAT-------------------GCTgactcag-----gccatctgtgc----------------tttccaggccagctctttcactta-----ttgctcatgattttggccaagcca-tttaaaatgtctaagcctcaatttcctcgtgggtaaaggaagctaataaggtctacctaatggaccc--------------------acccaataaaattct---tttgagaattaagtg-gga-aa--------------------atgtatattaaacacattggaa--a--ctCTTGTCTACAGGGGATATGTCATCAGTGAAAGTTGTTACTGCTGCTGTTTCT-ACTAGATTCCAAATTGAGAA-GAAAATCTTTCTAAAGCAAGTATCAAGTAGAGTTAGGAGGAAGCATCTAAAGTT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16839390 413 + 184069350 TTCCTCCCTGTGTCTGATTCTCTTTCTGT-----CCCATCT--------------------TCTTTGCTTCCCCATTTCCTTCACTCTTTCCTTCCCTGTCCAGCTCCTAATGAAT-------------------GCTgactcag-----accatctgtgc----------------tttccaggccagctctttcactta-----ttgctcatgattttggccaagcca-tttaaaatgtctaagcctcaatttcctcatgggtaaaggaagctaataatacctacctaacggaccc--------------------acccaataaaattat---tttgagaatttagtg-gga-aa--------------------atgtatattaaacacattggaa--a--ctCTTGTCTACAGGGGATATGTCATCAATGGGAGTTGTTACTGCTGCTGTTTCT-ACTAGATTCCAATTTGAGAA-GAAAATCTTTCTAAAGCAAGTATCCAGTAGAGTCAGGAGGAAGCATCTAAAGTT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20889183 413 + 189454096 TTCCTCCCTGTGTCTGATTCTCTTTCTGT-----CCCATCT--------------------TCTTTGCTTCCCCATTTCCTTCACTCTTTCCTTCCCTGTCCAGCTCCTAATGAAT-------------------GCTgactcag-----accatctgtgc----------------tttccaggccagctctttcactta-----ttgctcatgattttggccaagcca-tttaaaatgtctaagcctcaatttcctcatgggtaaaggaagctaataatacctacctaacggaccc--------------------acccaataaaattct---tttgagaattaagtg-gga-aa--------------------atgtatattaaacacattggaa--a--ctCTTGTCTACAGGGGATATGTCATCAATGGGAGTTGTTACTGCTGCTGTTTCT-ACTAGATTCCAATTTGAGAA-GAAAATCTTTCTGAAGCAAGTATCCAGTAGAGTCAGGAGGAAGCATCTAAAGTT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16479162 413 + 178775436 TTCCTCCCTGTGTCTGATTCTTTTTCTGT-----CCCATCT--------------------TCTTTGCTTCCCCATTTCCTTCACTCTTTCCTTCCCTGTCCAGCTCCTAATGCAT-------------------GCTGACTCAG-----ACCATCTGTGC----------------TTTCCAGGCCAGCTCTTTCACTTA-----TTGCTCATGATTTTGGCCAAGCCA-TTTAAAAtgtctaagcctcaatttcctcatggGTAAAGGAAGCTAATAATACCTATCTAACGGACCC--------------------ACCCAATAAAATTCT---TTTGAGAATTAAGTG-GGA-AA--------------------ATGTATATTAAACACATTGGAA--A--CTCTTGTCTACAGGGGATATGTCATCAATGGGAGTTGTTACTGCTGCTGTTTCT-ACTAGATTCCAAATTGAGAA-GAAAATCTTTCTAAAGCAAGTATCCAGTGGAGTCAGGAGGAAGCATCTAAAGTT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19962572 413 - 48547382 TTCCTCCCTGTGTCTGATTCTCTTTCCGT-----CCCATCT--------------------TCTTTGCTTCCCCATTTCCTTCACTCTTTCCTTCCCTGTCCAGGTCCTAATGAAT-------------------GCTgactcag-----accatctgtgc----------------tttccaggccagctcttccactta-----ttgctcatgattttggccaagcca-tttaaaatgtctaagcctcaatttcctcatgggtaaaggaagctaataatacctacctaacggacgc--------------------atccaaaaaaattct---tttgagaattaagtg-gga-aa--------------------atgtatattaaacacattggaa--a--ctCTTGTCTACAGGGGATATGTCATCAATGGGAATTGTTACTGCTGCTGTTTCT-ACTAGATTCCAAATTGAGAA-GAAAATCTTTCTAAAGCAAGTATCCAGGAGAGTCAGGAGGAAGCATCTAAAGTT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21324061 429 - 190850796 TTCCTGCCTGTGTCTGAATCACTTTCTGT-----CCCATCT--------------------TCTTTCCTTCCCCATTTTCTTCACTCTCTCCTTCCCTGCCCAGGTCCTATTCAAT-------------------ACTgactcag-----gccatctgtgc----------------tttctaagccagctctttcactta-----ctgctcatgattttggccaagtca-ttgaaaatgtctaagcctcaattttccc----gtaaaggaagctaataatgtctacctaatggaccaataaataaacccacaattagacccaataaaattct---tctgagaattaaatg-ggagaa--------------------atgtatatgaaacacattggaa--a--GTCTTGTCTACAGGGGCTATTTCATCAATGGAAGTCGTTACTGCTGCTGTTTCT-ACTAGATTCCAAATTGAGAA-GAAAATCTTTCTAAAGCAAATATCAAGTTGGGTCAGG-GGAAGCATCTAAAATT i calJac3.chr3 C 0 I 281 s mm10.chr5 49297342 448 + 151834684 tttctctttgtgtgtctttgtctctctgtattcctccatctgtttttgtctgttctctctctctctctctctctctctctctctctctctctctctctctctctctcCTAATAAACCAGGAGATACAATGAAACAATTGACTGGGTATTTACTCTTTGTGTTGGATACAGAAAAATGTCTACAGATGAAGACTCTCTTCTACCAGGTTGCTCATGACTTTGTTCGAGTTA-GTCATGGTGTCTAAGTTTTCATTTTCATGTGAGAAAGGGCAAC--GGGAGAGTTA--------------------------------ACCCAGCA-------------GAGAGTTAATTGAGGA-AA--------------------GTCTATATACAAGGTATTGGAATGC--ATATGTTTTACA---GATACTTTTTCAA----AGTTG-TATTGCAACTATTACT-ACT---TCACTAATGGGGAACGCCTTTTTTTCTCAAGTACATACCAAGGAGAGTAA--AGGGACCATGTTAAC-- i mm10.chr5 I 40 C 0 s canFam3.chr3 3888186 334 - 91889043 ------------------------------------------------------------------------------------------------------------------------------------------aagacag-----cccatctgagc----------------ttcctatgccagctctttcactta-----gtgtccatgattttggtcagatcacttcaaagtatctaagcctcaatttaatcatgtgtgaacagaactaatgatgcctacAGAGA--------------------------ATTAAATAAGGTTTtatatatatatataaaata-gaa-aatatatatatatatgatatatatatatatatatCACATTGGAA--AATATCTGGTATATAGGAGATAATTCATCAACAGAAGATGTTGCTACTAATGTTAATGACTAGACCCAAAAGTAAGAA-GGACATCTTTCTTGAGCAA----CTAAGAGAGTCAG--GGACAGTTCTAAAGTC i canFam3.chr3 C 0 C 0 a score=276623.000000 s hg38.chr4_KI270790v1_alt 199178 105 + 220246 TCTGCAAGGACCATGGCA-CATCTTCTTGAACACTGCTGGGATGATTATTTGGATAATAGGAGTTGGCATCATTTTCATT-------ATTTTAT--------------------------AGGCAATATAGAAATATAT s panTro4.chr4 21588131 105 + 193495092 TCTGCAAGGACCATGGCA-CATCTTCTTGAACACTGCTGGGATGATTATTTGGCTAATAGGAGTTGGCACCATTTTAATT-------ATTTTGT--------------------------AGGCAATATAGAAATATAT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21763888 105 + 198332218 TCTGCAAGTACCATGGCA-CATCTTCTTGAACACTGCTGGGATGATTATTTGGATAACAGGAGTTGGCACCATTTTAATT-------ATTTTAT--------------------------AGGCAATATAGAAATATAT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20372956 105 - 85365473 TCTGCAAGGACCATGGCA-CATCTTCTTGAAAACTGCTGGGATGATTATTTGGATAACAGGAGTTGGCACCATTTTAATT-------ATTTTAT--------------------------AGGCAATATAGAAATATAT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16839803 105 + 184069350 TCTGCAAGGACCATTACA-CATCTTCTTGAACAGTGCTGGTATGATTATTTGGATAACAGGAGGCAGCACCATTTTAATT-------ATTTTAT--------------------------AGGCAATATAGAAATATAT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20889596 105 + 189454096 TCTGCAAGGACCATTACA-CATCTTCTTGAACAGTGCTGGTATGATTATTTGGATAACAGGAGACAGCACCATTTTAATT-------ATTTTAT--------------------------AGGCAATATAGAAATATAT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16479575 105 + 178775436 TCTGCAAGGACCATTACA-CATCTTCTTGAACAGTGCTGGTATGATTATTTGGATAACAGGAGATAgcaccattttaatt-------attttat--------------------------aggcaatatagaaatatat i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19962985 105 - 48547382 TCTGCAAGGACCATTACA-CATCTTCTTGAACAGTGCTGGTATGATTATTTGGATAATAGGAGTTAGCACCATTTTAATT-------ATTTTAT--------------------------AGGTAATATAGAAATATAT i chlSab2.chr27 C 0 C 0 s mm10.chr5 49297790 127 + 151834684 CCTGTAAACA-CATGGTAGAATCTTCTTAAATGCTACTGCAAT--TTTGTTAAAGATCAAAA--CAATGTCATTTCAGTT-------GACTTGTGCTTTTGTTTTGTTTTTTTAGGCAACAGGTAATATAGGAGTACAT i mm10.chr5 C 0 I 431 s canFam3.chr3 3888520 108 - 91889043 -CCACAAAGTTCCTGGGGGAATCTTCTTGAATACTGTTGGGACTCTTATATGGACTACAG----TGGTATCATTTTAATTAATTAACATCTTAC--------------------------GGGCAATGTAAGACGATAT i canFam3.chr3 C 0 C 0 e calJac3.chr3 21324490 281 - 190850796 I a score=15597.000000 s hg38.chr4_KI270790v1_alt 199283 6 + 220246 CTGCAC s panTro4.chr4 21588236 6 + 193495092 CTGCAC i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21763993 6 + 198332218 CTGCAC i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20373061 6 - 85365473 CTGCAC i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16839908 6 + 184069350 CTGTAC i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20889701 6 + 189454096 CTGCAC i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16479680 6 + 178775436 ctgcac i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19963090 6 - 48547382 CTGTAC i chlSab2.chr27 C 0 C 0 s canFam3.chr3 3888628 6 - 91889043 GTGCAA i canFam3.chr3 C 0 C 0 e mm10.chr5 49297917 431 + 151834684 I e calJac3.chr3 21324490 281 - 190850796 I a score=392005.000000 s hg38.chr4_KI270790v1_alt 199289 166 + 220246 TCTTCTTTAAAAAAAttactaatacataatagttgtatatttttatggggtacaagtgatattttgctacctgcatagaaagtgtaatgatcaagtcagaatgttaaggttgtccatcacctcgagtatttgtcatttctaagtgttgaaaatattttgagtcctc s panTro4.chr4 21588242 166 + 193495092 TCTTCTTTAAAAAAAttactaatacttaatagttgtatatttttatggggtacaagtgatattttgctacctgcatagaaagtgtaatgatcaagtcagaatgttaaggttgtccatcacctcgagtatttgtcatttctaagtgttgaaaatattttgagtcctc i panTro4.chr4 C 0 I 263 s ponAbe2.chr4 21763999 166 + 198332218 TCTTCTTTAAAAAAAttactaatacataatagttgtatatttttatgcggtacaagtgatattttgctacctgcatagaaagtgtaatgatcaagtcagaatgttaaggttgtccatcacctcgagtatttgtcatttctaagtgttgaaaatattttgagtcctc i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20373067 165 - 85365473 TCCTCTTTAAAAAAAttactaatacataatagttgtatatttttatggggtacaagtgatattttgct-cctgcatagaaagtgtaatgatcaagtcagaatgttaaggttgtccatcacctcgagtatttgtcatttctaagtgttgaaaatattttgagtcctc i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16839914 165 + 184069350 TTCTCTTT-AAAAAAttactaatacataatagttgtatatttttatggggtacaagtgatattttgatatctgaatagaaagtgtaatgatcaagtcagaatgttaaggttgtccatcaccttgagtatttgtcatttttaagtgttcaaaatattttcagtcctc i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20889707 165 + 189454096 TTCTCTTT-AAAAAAttactaatacataatagttgtatatttttatggggtacaagtgatattttgatatctgaatagaaagtgtaatgatcaagtcagaatgttaaggttgtccatcaccttgagtatttgtcatttttaagtgttcaaaatattttcagtcctc i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16479686 165 + 178775436 ttctcttt-aaaaaattactaatacataatagttgtatatttttatggggtacaagtgatattttgatacctgaATAGAAAGTGTAATGATCAAGCCAGAATGTTAAGGTTgtccatcaccttgagtatttgtcatttctaagtgttcaaaatattttcagtcctc i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19963096 165 - 48547382 TTCTCTTT-AAAAAAttactaatacataatagttgtatatttttatggggtataagtgatattttgatacctgcatagaaagtgtaatgatcaagtcagaatgttaaggttgtccatcaccttgagtatttgtcatttctatgtcttcaaaatattttcagtcctc i chlSab2.chr27 C 0 C 0 e mm10.chr5 49297917 431 + 151834684 I e calJac3.chr3 21324490 281 - 190850796 I e canFam3.chr3 3888634 0 - 91889043 C a score=127702.000000 s hg38.chr4_KI270790v1_alt 199455 52 + 220246 tcttctagcaattttgaaatatacaacatattcttgttcactacagtcacct s panTro4.chr4 21588671 52 + 193495092 tcttctagcaattttgaaatgtacaacatattcttgttcactatagtcacct i panTro4.chr4 I 263 C 0 s ponAbe2.chr4 21764165 52 + 198332218 tcttccagcaattttgaaatgtacaacatattcttgttcactatagtcacct i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20373232 52 - 85365473 tcttctagcaattttgaaatatacaacatattcttgttcactatagttacct i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16840079 52 + 184069350 tcttctagcaattttgaaatatacaacatattcttgttcactatagtcacct i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20889872 52 + 189454096 tcttctagcaattttgaaatatacaacatattcttgttcactatagtcacct i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16479851 50 + 178775436 tcttctagcaattttgaaatatacaacatattCTTGTTCAC--TAGTCACCT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19963261 52 - 48547382 tcttctagcaattttgaaatatacaacatattcttgttcactatagtcacct i chlSab2.chr27 C 0 C 0 e mm10.chr5 49297917 431 + 151834684 I e calJac3.chr3 21324490 281 - 190850796 I e canFam3.chr3 3888634 0 - 91889043 C a score=359646.000000 s hg38.chr4_KI270790v1_alt 199507 123 + 220246 tactctgctattgaacattagaatgtattccttctacctcactgtatgttttacccattcaccagcctctcttcctacatgccctgcccacacat----accctctccagc-ctttTT-TCCC-ATGTTC s panTro4.chr4 21588723 123 + 193495092 tactctgctattgaacattagaacgtattccttctacctcactgtatgttttacccattcaccagcctctcttcctacatgccctgcccacacat----accctctccagc-ctttTT-TCCT-ATGTTC i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21764217 123 + 198332218 tactctgctattgaacattagaacgtattccttctacctcactgtgtgttttacccattcaccagcctctcttcctacatgccctgcccacacat----accctctccagc-ctttTT-TCCC-ATGTTC i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20373284 124 - 85365473 tactctgctattgaacattagaacgtactccttctacctcactgtatgttttacccattcaccagcccctcttcctacatgccctgcccacatat----accctctccagc-ctttTTCCCCC-ATGTTC i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16840131 128 + 184069350 tactctgctattgaacattagaacgcattccttctacctcactgtatgttttacccattcaccagcctctcttcctacattccctgcccacacatacacaccctctccagc-ctttTT-TCCCAATGTTA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20889924 128 + 189454096 tactctgctattgaacattagaacgcattccttctacctcactgtatgttttacccattcaccagcctctcttcctacattccctgcccacacatacacaccctctccagc-ctttTT-TCCCAATGTTA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16479901 128 + 178775436 TACTCTGCTATTGAACATTAGAACGCATTCCTTCTACCTCACTGTATGTTTTACCCATTCACCAGCCTCTCTTCCTACATTCCCtgcccacacatacacaccctctCTAGC-CTTTTT-TCCCAATGTTA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19963313 129 - 48547382 tactctgctattgaacattagaatgcattccttctacctcactgtatgttttacccgttcaccagcctctcttcctaaattccctgcccacacatacacacgctctcctgcttttTTT-TCCCAATGTTA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21324771 128 - 190850796 tgctctgctattgaacattagaacttattccttctacctcactgtatgttttacccattcaccagcttctcttcatatgtgctctgcccacacatacatatcctctccagc-ctttTT-CCCACATGTTC i calJac3.chr3 I 281 C 0 e mm10.chr5 49297917 431 + 151834684 I e canFam3.chr3 3888634 0 - 91889043 C a score=32796.000000 s hg38.chr4_KI270790v1_alt 199630 9 + 220246 TCTTTCTTT s panTro4.chr4 21588846 9 + 193495092 TCTTTCTTT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21764340 9 + 198332218 TCTTTCTTT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20373408 9 - 85365473 TCTTTCCTT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16840259 9 + 184069350 TCTTTCTTT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20890052 9 + 189454096 TCTTTCTTT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16480029 9 + 178775436 TCGTTCTTT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19963442 9 - 48547382 TCTTTCTTT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21324899 9 - 190850796 TATTTCTTT i calJac3.chr3 C 0 C 0 s canFam3.chr3 3888634 9 - 91889043 TCTTTCTTT i canFam3.chr3 C 0 C 0 e mm10.chr5 49297917 431 + 151834684 I a score=125526.000000 s hg38.chr4_KI270790v1_alt 199639 40 + 220246 CATCACATAAACACTGGCT-TTCTAGTCAATGGGAAACAAA s panTro4.chr4 21588855 40 + 193495092 CATCACATAAACACTGGCT-TTCTAGTCAATGGGAAACAAA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21764349 40 + 198332218 CATCACATAAACACTGGCT-TTCTAGTCAATGGGAAACAAA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20373417 40 - 85365473 CATCACATAAACACTGGCT-TTCTAGTCAATGGGAAACAAA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16840268 40 + 184069350 CATCACATAAACACTGGCT-TTTTAGTCAATGGGAAACAAA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20890061 40 + 189454096 CATCACATAAACACTGGCT-TTTTAGTCAATGGGAAACAAA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16480038 40 + 178775436 CATCACATAAACACTGGCT-TTTTAGTCAATGGGAAACAAC i papAnu2.chr5 C 0 I 723 s chlSab2.chr27 19963451 40 - 48547382 CATCACATAAACACTGGCT-TTTTAGTCAATGGGAAACAAA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21324908 39 - 190850796 CATCTTATAAATACTGGCT-TTTTAGTCAATGGGGAAAAA- i calJac3.chr3 C 0 C 0 s mm10.chr5 49298348 37 + 151834684 CAATATGTAAGAACTGCTT-TTATATTCAGTAGGAGCA--- i mm10.chr5 I 431 C 0 s canFam3.chr3 3888643 26 - 91889043 TAACATGCAAACACTGGCTATACTAG--------------- i canFam3.chr3 C 0 C 0 a score=2161389.000000 s hg38.chr4_KI270790v1_alt 199679 669 + 220246 TTACCAAATGGTCATATTTCACAGCACAAGCTCATGTACAAACCCATGATT-------AGACTTCAATCACT-CAAAAAAATTATAAAATTCAACGAAAATGATATGAATATGTATGCATTTTCTGACAGAAGAGTCCAGCACTTCCACTCAATTCTAAACAAAT-----TATAATAATCCTGAAG-------TGATTCTATACTGGATATATTGTGTGTAAA-----TACATCATCAG------ATTTA-TTTTTCCCTGGAAACCTAAGGAATAAGTTTAATATACTCC---AAAAATATAGTCTAGTGcagtgttttgtcacc--tttgagatggtagtcccctttgacagttttataaaaattataaactctctctcaagaTTAATAAATTGTCATCAATAATGGCTGTATTTTCAAAGGCTCCTAGTGGTAAGTTCTCCCTCATAGCAGCTAG----GAACATTCCATCTCTCCCTTCCTTGACATATTGACTACTTTACAATCTCCCCTGATATTTCTCGGCTCTCTAGTCTCCTTTGTTCTTTGAGAGAAG---GCCACAGCAGTCAGTCTTTCTACAGCATCGGCTACCTAggacatggacagagaaggaaagg----gacaaggggaagggggcaaaaagaagatgggacagaaaggtaagagagtc--agacacag-------ggaggaaggagatagagacagg--agagaaggaag- s panTro4.chr4 21588895 673 + 193495092 TTACCAAATGATCAGATTTCACAGCACAAGCTCATGTACAAACCCATGATT-------AGACTTCAATCACT-CAAAAAAATTATAAAATTCAACGAAAATGATATGAATATGTATGCATTTTCTGACAGAAGAGTCCAGCACTTCCACTCAATTCTAAACAAAT-----TATAATAATCCTGAAG-------TGATTCTATACTGGATATATTGTGTGTAAA-----TACATCATCAG------ATTTA-TTTTTCCCTGGAAACCTAAGGAATAAGTTTAATATACTCC---AAAAATATAGTCTAGTGCAGTGTTTGGTCACC--TTTGAGATGGTAGTCCCCTTTGACAGTTTTATAAAAATTATAAACTTTCTCTCAAGATTAATAGATTGTCATCAATAATGGCTGTATTTTCAAAGGCTCCTGGTGGTAAGTTCTCCCTCATAGCAGCTAG----GAACATTCCATCTCTCCCTTCCTTGACATATTGACTACTTTACAATCTCCCCTGATATTTCTCTGCTCTCTAGTCTCCTTTGTTCTTTGAGAGAAG---GCCACAGCAGTCAGTCCTTCTACAGCGTTGGCTACCTAGGACATGGACAgagaaggaaagggacagacaaggagaagggggcaaaaagaagatgggacagaaaggtaagagagtc--agacacag-------ggaggaaggagatagagacagg--ggagaaggaag- i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21764389 670 + 198332218 TTACCAAATGATCATATTTCACAGCACAAGCTCATGTACAAACCCATGATT-------AGACTTCAATCACCGAAAAAAAATCATAAAATTGAATGAAAATGATATGAACACGTATGCATTTTCTGACAAAAGAGTGCAGCACTTCCACTCAATTCTAAACAAAT-----TATAATAATTCTGAAG-------TGATTCTATACTGAATATATTGTGTGTAAA-----TACATCATCAG------ATTTA-TTTTTCCCTGGAAACCTAAGGAATAAGTTTAATATACTCC---AAAAATAGAGTCTAGTGCAGTGTTTTGTCACC--TTTGAGCTGTTAGTCCCCTTTGACAGTTTTATAAAAATTATAAACTTTCTCTCAAGATTAATAAATTGTCATCAATAATGGCTGTATTTTCAAAGGCTCCTGGTGGTAAATTCTCCCTCATAGCAGCTAG----GAACATTCCACCTCTCCCTTCCTTGACATACTGACTACTTTACAATCTCCCCTGATATTTCTCTGCTCTCTAATCTCTTTTGTTCTTTGAGAGAAG---GCCACAGCAGTCAGTCCTTCTACAGCATTGGCTACCTAGGACATGGACagagaatgaaagg----gacaaggagaagggggcaaaaagaagacgggacagaaaggtaagagagtc--agacacag-------ggaggaaggagatagagacagg--agagaaggaag- i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20373457 670 - 85365473 TTACCAAATGATCATATTTCACAGCACAAGCTCATGTGCAAACCCATGATT-------AGACTTCAATCACT-CAAAAAAATTATAAAATTGAATGAAAATGATATGAATATGTACGCATTTTCTGACAAAAGAGTCCAGCACTTCCACACAATTCTAAACAAAT-----TCTAATAATCCTGAAG-------TGATTCTATACTGGATATATTGTGTATAAA-----GACATCATCAG------ATTTATTTTTTCCCTGGAAACCTAAGGAGTAAGTTTAATATACTCT---AAAAATATAGTCTAGTGCAGTGTTTTGTCACC--TTTGAGATGGTAGTCCCCTTTGATAGTTTTATACAAATTATAAACTTTCTCTCAAGATTAATAAATTGTCATCAATAATGGCTATATTTTCCAAGGCTCCTGGTGGTAAATTCTCCTTCATAGCAGCTAG----GAACATTCCATCTCTCCCTTCCTTGACATACTGACTACTTTACAATCTCCCCTGATACTTCTCTGCTCTCTAATCTCCTTTGTTCTTTGTGAGAAG---GCCACAGCGGTGAGTCCTTCTATAGCACCGGCTACCTAGGACATGGACAGAGAAGGAAAGA----CACAAGGAGAAGGGGGCAAAAAGAAGATGGGACAGAAAGGTAAGAGAGTC--AGACACAG-------AGAGGAAGGAGATAGAGACAGG--AGACAAGGAAG- i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16840308 668 + 184069350 TTACCAAATGATTATATTTCACAGCACAAGCTCATGTACAAACCCATGATT-------AGACTTCAATCACT-C-AAAAAATTATAAAATTGAATGAAAATGATACGAACATGTATGCATTTTCTGACAAAAGAGTCCAGCACCCCCATTCAATTCTAAACAAAT-----TCTAATAATCCTGAAG-------TGATTCTATACTGGATATATTGTGCGTAAA-----TACATCATCAG------ATTTA-TTTTTCCTTAGAAACCTAAAGAATAAGTTTAACATACTCC---AAAAATATAGTCTAGTGCAGTGTTTTGTCACC--TTTGAGCTGGTAGTCCCCTTTGATAGTTTTATAAAAATTATAAACTTTCTCTCAAGAGTAATAAATTGTCATCAATAATGGCTGTATTTTCAAAGGCTCCTGGTGGTAAATTTTCCCTCATAGCGGCTAG----GAACATTCCATCTCTCCCTTCCTTGACATACTTACTACTTTACAATCTCCCCTGGTATTTCTCTGCTCTCTAATCTCCTTTGTTCTTTGTGAGAAG---GCCACAGCAGTGAGTCCTTCTACAGTACTGGCTATCTAGGACATGGACAGAgaaagaaaga----gacaaggagaagggggcagaaagaagatgggacggaagggtaagagagtc--agacacag-------ggaggaaggagatagagacaag--agaggaggaag- i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20890101 668 + 189454096 TTACCAAATGATTATATTTCACAGCACAAGCTCATGTACAAACCCATGATT-------AGACTTCAATCACT-C-AAAAAATTATAAAATTGAATGAAAATGATACGAACATGTATGCATTTTCTGACAAAAGAGTCCAGCACCCCCATTCAATTCTAAACAAAT-----TCTAATAATCCTGAAG-------TGATTCTATACTGGATATATTGTGCGTAAA-----TACATCATCAG------ATTTA-TTTTTCCTTAGAAACCTAAAGAATAAGTTTAACATACTCC---AAAAATATAGTCTAGTGCAGTGTTTTGTCACC--TTTGAGCTGGTAGTCCCCTTTGATAGTTTTATAAAAATTATAAACTTTCTCTCAAGAGTAATAAATTGTCATCAATAATGGCTGTATTTTCAAAGGCTCCTGGTGGTAAATTTTCCCTCATAGCGGCTAG----GAACATTCCATCTCTCCCTTCCTTGACATACTTACTACTTGACAATCTCCCCTGGTATTTCTCTGCTCTCTAATCTCCTTTGTTCTTTGTGAGAAG---GCCACAGCAGTGAGTCCTTCTACAGTACTGGCTATCTAGGACATGGACAGAGAAAGAAAGA----GACAAGGAGAAGGGGGCAGAAAGAAGATGGGACGGAAGGGTAAGAGAGTC--AGACACAG-------GGAGGAAGGAGATAGAGACAAG--AGAGGAGGAAG- i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16480801 639 + 178775436 TTACCAAATGATTGTATTTCACAGCACAAGCTCATGTACAAACCCATGATT-------AGACTTCAATcact-c-aaaaaattataaaattgaatgaaaatgatACGAACATGTATGCATTTTCTGACAAAAGAGTCCAGCACCCCCATTCAATTCTAAACAAAT-----TCTAATAATCCTGAAG-------TGATTCTATACTGGATATATTGTGCGTAAA-----TACATCATCAG------ATTTA-TTTTTCCCTAGAAACCTAAAGAATAAGTTTAACATACTCC---AAAAATATAGTCTAGTGCAGTGTTTTGTCACC--TTTGAGATGGTAGTCCCCTttgatagttttataaaaattataaactttctctcaagataaataaattgtCATCAATAATGGCTGTATTTTCAAAGGCTCCTGGTGGTAAATTCTCCCTCATAGCGGCTAG----GAACATTCCATCTCTCCCTTCCTTGACATACTTACTACTTTACAATCTCCCCTGGCATTTCTCTGCTCTCTAATCTCCTTTGTTCTTTGTGAGAAG---GCCACATCAGTGAGTCCTTCTACAGTACTGGCTATCTAGGACatggacagagaaagaaaga----gacaaggagaagggggcagaaagaagatgggacggaaaggtaagagagt--------------------------------------gg--agaggaggaag- i papAnu2.chr5 I 723 C 0 s chlSab2.chr27 19963491 667 - 48547382 TTACCAAATGATTATATTTCACAGCACAAGCTCATGTACAAACCCATGATT-------AGACTTCAATCACT-C-AAAAAATTATAAAATTGAATGGAAATGATACGAACAAGTATGCATTTTCTGACAAAAGAGTCCAGCACCCCCATTCAATTCTAAACAAAT-----TCTAATAATCCTGAAG-------TGATTCTATACTGGATATATTGTGCGTAAA-----TACATCATCAG------ATTTA-TTTTTCCCTAGAAACCTAAAGAAGAAGTTTAATATACTCC---AAAAATGTAGTCTACTGCAGTGTTTTGTCACC--TTTGAGATGGTAGTCCCCTTTGATAGTTTTATAAAAATTATAAACTTTCTCTCAAGATTAATAAATTGTCATCAATAATGGCTGTATTTTCAAAGGCTCCTGGCGGTAAATTCTCCCTCATAGAGGCTAG----GAACATTCCATCTCTCCCTTCCTTGACATACTTACTACTTTACAATCTCCCCTGGTATTTCTCTGCTCTCTAATCTCCTTTGTTCTTTGTGAGAAG---GCCACAGCAGTGAGTCCTTCTACAGTACTGGCTATCTAGGACATGGACAGAGAAAGAAAGA----GACAAGGAGAAGGGGGCAAAAAGAAGATGAGATGGAAAGGTAAGACAGTC--AGACACAG-------GGAGGAAGGAGATAGAG-CAGG--AGAGGAGGAAG- i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21324947 665 - 190850796 TTACCAAATGATCATATTTCACAGCATAAGCTCATGTACAAACCCATGATT-------AGACTTCAATCACT-C-AAAAAATTATAAAATTGAATGAAAATGATATGAACATGTATGCATTTTCTGGCAACGGAGTCCAAAGCTTCCATTCAATTCTAAAAAAAT-----TCTAATAATGTAGAAG-------TGACTCTATACTGGATATATTATATGTAAA-----TACATCATCAG------ATTT--TTTTCCCCTAAAAACCTAAGGAATTAGTTTAACATACTCC---AAAAATATAGTCTAGTGCAGTGTTTTGTCACC--TTTGAGATGGTGACCCCCTTTGATAGTTTTCTAAAAATTATAAACTTTCTCTGAAGACTAATAAATTGTAGTCAAAAAAGGTTGTATCTTCAAAGGCTCCTGGTGGTAAATTCTTCCTTATAGAGGCTAGAAATGAAGAGTCCATCTCTCCATTCCATGATGGACTGACTACTTTATAATCTCCCATGGCATTTCTCTG--CTCTAATCTCCTTTGTTCTTGGTGAGAAG---GCCTCAGTAGTGAGTCCTTCTGTATTA----CTATCTAGAACATGGACAGAGAAGGAAAGA----GAGAAGGTGAAGGGGAAAAAAAGAATATGGGACAGAAAGGTAAGTGAGTC--AGGCACAG-------GGAGGAAGGAGAGAGAGACAGG--TGTAAAATAAA- i calJac3.chr3 C 0 C 0 s mm10.chr5 49298385 642 + 151834684 TTGGCAAA--ATGATATTTCACAGGCTTAACTAATTCTTAAA-----GATTGTTTCACAGGTTTAGCTCACT-CTTAAAAATTGTAACCCAGAATGAAAATG----GCATATGTGAGCACTG--TGACAAAAGAATCTAGGAATTTCGTGTATTTTGAAGTTGCTAGCTCTCTAAAATTAACTATG-------GGATTCCATAGAAGATGCACTGGACATAAG-----TGGGTTCTCAGTTATCAACTTC-TTTCCCCTCTGAAAAATGAGATGTGAAGTTAATTTA--------------TAGCCTGATGTCATATCTTGTCACT--TTTGAGGTAATCGTTTCCTTTGATAATAGTATGAAAATTTTAAACTATCTTGCAAGAGTACTGGATTACATTCAATAATGACTATATTTCT--ATGTTCCCGGTGG-------------------ACTGG----AAACTGTCCATCTTTCTTGTCCTGGGCATACTGGCTAATTTACAATCTCCCCAGGTATTTGTTTGCTTGCCAATCTACTTTGTTCTTCGTGCAAGGGTAGCCTAATTGGAAAAACCTT-------GTTAGAAATGCAGGACGTAGGAGGAGAAGGGCAGA----GA----GAGCAGGAG-CTGagggaagatggaacagaaaggtaagaaagtatgagagacagtgaaaatagatgaaggagagaataacatg--aaggactgaat- i mm10.chr5 C 0 I 1 s canFam3.chr3 3888669 538 - 91889043 ------AACAATTGTACTTATTAGTACCAAAGCAAGGACAGAACCATGGGT-------AGGCTT---------C-AAAAGATTATAAAATCAGATGAAAATGGTATGAACATGTATGAATTTTCTGACAAAATACTTCAG-AGTATCATTCAAATCTGAACAGTT-----TCTAACACTCAGGAAATAATACTTGATTCTATACTAGATATGTTG-GAGTCAATAATTTATGTTATCAG------CTTTT-TTCTTTTCTAGAAACCTGAGGAATATATCAAATTTATGCCCTAAAATGTATGGTCTAGAGCCATGTTTTGTCATCTTTTTGAGGTAAATGTCCCCTTTGATAACTGtataaaaattattga---------------aaaaaat--------ataa-----------------------------------------atGGCAGTCTG----TCACTGTCCAAC-----------------------------------------------------------AAACTCCCTTGCTCTTTGGGAGAAG---GTCATAACATTGAGCACTTCTTTACTAAAGGCAATCCAGGAC------AAAGAAGGAAAGA----GAACAGGAAGAGAAGGGAGGAAGA-----GGAAAAAGATATTACAGAGTC--ATGCACAG-------GGATGaggaagggaagggaagggaagggaagggaag i canFam3.chr3 C 0 C 0 a score=205720.000000 s hg38.chr4_KI270790v1_alt 200348 83 + 220246 aaagaggaaaggagaagaggaagaaagagagggaggaagggggggattaatgggggaaggaga---------------agaagggaagAGAG------------------------------------AATATG---------- s panTro4.chr4 21589568 83 + 193495092 aaagaggaaaggagaagaggaagaaagagagggaggaaggggggaattaatgggggaaggaga---------------agaagGGAAGAGAG------------------------------------AATATG---------- i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21765059 82 + 198332218 aaagaggaaaggagaagaggaagaaagagagggaggaa-gggggaattaatgcgggaaggaga---------------agaagggaagagag------------------------------------aaTATG---------- i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20374127 83 - 85365473 AAAAAGGACAGGAGAAGAGGAACAAAGAGAGGGACGAAGGGGGGAATTAATGGGGGAAGGAGA---------------AGAAGGGAAGAGAG------------------------------------AATATG---------- i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16840976 82 + 184069350 aaagaggaaaggagaagaggaag-aagagagggaggaaggggggaaataatgggggaaggaaa---------------aaaaaggaagagag------------------------------------aaTAGG---------- i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20890769 82 + 189454096 AAAGAGGAAAGGAGAAGAGGAAG-AAGAGAGGGAGGAAGGGGGGAAATAATGGGGGAAGGAAA---------------AAAAAGGAAGAGAG------------------------------------AATAGG---------- i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16481440 83 + 178775436 aaagaggaaaggagaagaggaagaaagagagggaggaaggggggaaataatgggggaaggaaa---------------aaaaaggaagagag------------------------------------aatagG---------- i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19964158 83 - 48547382 AAAGAGGAAAGGAGAAGAGGAAGAAAGAGACGGAGAAAAGGGGGAAATAATGGGGGAAGGAAA---------------AGAAGGGAAGAGAG------------------------------------AATAGG---------- i chlSab2.chr27 C 0 C 0 s mm10.chr5 49299028 134 + 151834684 caggaaggaaatatttggggaaggaagaaaggaaggaaattaggaataattgaatgaaggaaggTGACCCATGGAGATGGGAGGGAAGAACGATTTTAGGAGAGAATAAGCAGGAACTGAGAGCTCACAATAGG---------- i mm10.chr5 I 1 C 0 s canFam3.chr3 3889207 84 - 91889043 --ggaagggaagggaagggaagggaagggaagggaagggaagggaa-------gggaagggag---------------agaagagaggagag------------------------------------gagaggagaggagagg i canFam3.chr3 C 0 I 722 e calJac3.chr3 21325612 0 - 190850796 C a score=439778.000000 s hg38.chr4_KI270790v1_alt 200431 138 + 220246 ACTTGGTAGCTTTTAGT---AGGTCAAGAAGTAGGTTTATAAGAAACACCTCTTTCAAAC--CTCTCAACTTCCTTCCCCATTCAACACATTTGCTCTAAGATAAAGGTGAAGTAATTGAGAACAGCCTGGCCTACAGCTTTT s panTro4.chr4 21589651 138 + 193495092 ACTTGGTAGCTTTTGGT---AGGTCAAGAAGTAGGTTTATAAGAAACACCTCTTTCAAAC--CTCTCAACTTCCTTCCCCATTCAACACATTTGCTCTAAGATAAAGGTGAAGTAATTGAGAACAGCCTGGCCTACAGCTTTT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21765141 138 + 198332218 ACTTGGTAGCTTTTTGT---AGGTCAAGAAGTAGGTTTATGAGAAATATCTCTTTCAAAC--CTCTCAACTTCCTTCCCCACTCAACACATTTGCTCTAAGATAAAGGTGAAGTAATTGAGAACAGCCTGGCCTACAGCTTTT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20374210 138 - 85365473 ACTTGGTAGCTTTTGGT---AGGTCAAGAAGTAGGTTTATGAGGAACACCTCTTTCAAAC--CTCTCAACTTCCTTCCCCACTCAACACATTTGCTCTAAGATAAAGGTGAAGTAACTGAGAACAGCCTGGCCTACAGCTTTT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16841058 138 + 184069350 ACTTGGTAGCTTTTGGT---AGGTCAAGAAGTAGGTTTATGAGAAACACCTCTTTCAAAC--CTCTCAACTTGCTTCCCCATTCAACACATTTGCTCTAAGATAAAGGTGAAGTAATTGAGGACAGCCTGGCCTACAGCTTTT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20890851 138 + 189454096 ACTTGGTAGCTTTTGGT---AGGTCAAGAAGTAGGTTTATGAGAAACACCTCTTTCAAAC--CTCTCAACTTGCTTCCCCATTCAACACATTTGCTCTAAGATAAAGGTGAAGTAATTGAGGACAGCCTGGCCTACAGCTTTT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16481523 138 + 178775436 ACTTGGTAGCTTTTGGT---AGGTCAAGAAGTAGGTTTATGAGAAACCTCTCTTTCAAAC--CTCTCAACTTACTTCCCCCTTCAACACATTTGCTCTAAGATAAAGGTGAAGTAATTGAGGACAGCCTGGCCTACAGCTTTT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19964241 138 - 48547382 TCTTGGTAGCTTTTGGT---AGGTCAAGAAGTAGGTTTATGAGAAACACCTCTTTCAAAC--CTCTCAACTTGCTTCCCCATTCAACACATTTGCTCTAAGATAAAGGTGAAGTAATTGAGGACAGCCTGGCCTACAGCTTTT i chlSab2.chr27 C 0 C 0 s mm10.chr5 49299162 137 + 151834684 ATCTTTTAGCCTTTGAC---ATGTTGATAAATAGGTTC-TGAGAGACAGCTCTTTCATGC--CTTTCAACTTCCTTACCCACTCAGCACATTGACTCTGAGATAAAGAGAATGCAGCTAAGGGCAGTCTGACCTATGGTTCTT i mm10.chr5 C 0 C 0 s canFam3.chr3 3890013 141 - 91889043 ACTTGGGAGCTTCCAGCATAATGTTAATGTGTAAGTATCTCAGAGACATCTTTTCCACACCTCTCTCAACTTCCTTATTCACTGAGCACATTTTCTCGGAGAAAAAA--AGAGCTGTTGAGGGCATTCTGATCCACAGCtttt i canFam3.chr3 I 722 I 495 e calJac3.chr3 21325612 0 - 190850796 C a score=37856.000000 s hg38.chr4_KI270790v1_alt 200569 13 + 220246 AAAGTGACCTATG s panTro4.chr4 21589789 13 + 193495092 AAAGTGACCTATG i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21765279 13 + 198332218 AAAGTGACCTATG i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20374348 13 - 85365473 ACAGTGACCTATG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16841196 13 + 184069350 AAAGTGACCTATG i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20890989 13 + 189454096 AAAGTGACCTATG i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16481661 13 + 178775436 AAAGCGACCTATG i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19964379 13 - 48547382 AAAGTGACCTATG i chlSab2.chr27 C 0 C 0 s mm10.chr5 49299299 13 + 151834684 AAAGTTATCTGTG i mm10.chr5 C 0 I 3 e calJac3.chr3 21325612 0 - 190850796 C e canFam3.chr3 3890154 495 - 91889043 I a score=82024.000000 s hg38.chr4_KI270790v1_alt 200582 37 + 220246 AATGGATATTATAAAGAATGTGTTAGTAATTTCCCTT s panTro4.chr4 21589802 37 + 193495092 AACGGATATTATAAAGAATGTGTTAATAATTTCCCTT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21765292 37 + 198332218 AATGGATATTATATAGAATGTGTTAATAATTTTCCTT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20374361 37 - 85365473 AATGGATATTATATAGAATGTGTTAATAATTTTCCTT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16841209 37 + 184069350 AATTGATATTATATCAAATGTGTTAATAATTTTCCTT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20891002 37 + 189454096 AATTGATATTATATCAAATGTGTTAATAATTTTCCTT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16481674 37 + 178775436 AATTGATATTATATCGAATGTGTTAATAATTTTCCTT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19964392 37 - 48547382 AATTGATATTATATCGAATGTGTTAATAATTTTCCTT i chlSab2.chr27 C 0 C 0 e mm10.chr5 49299312 3 + 151834684 I e calJac3.chr3 21325612 0 - 190850796 C e canFam3.chr3 3890154 495 - 91889043 I a score=1692.000000 s hg38.chr4_KI270790v1_alt 200619 3 + 220246 TGA s panTro4.chr4 21589839 3 + 193495092 TGA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21765329 3 + 198332218 TGA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20374398 3 - 85365473 TGA i nomLeu3.chr20 C 0 C 0 e mm10.chr5 49299312 3 + 151834684 I e chlSab2.chr27 19964429 0 - 48547382 C e macFas5.chr5 20891039 0 + 189454096 C e rheMac3.chr5 16841246 0 + 184069350 C e calJac3.chr3 21325612 0 - 190850796 C e canFam3.chr3 3890154 495 - 91889043 I e papAnu2.chr5 16481711 0 + 178775436 C a score=1263.000000 s hg38.chr4_KI270790v1_alt 200622 11 + 220246 t-tattttat---tt s panTro4.chr4 21589842 15 + 193495092 TGtattttatttatt i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21765332 12 + 198332218 TGTATTTTAT---TT i ponAbe2.chr4 C 0 I 25 e mm10.chr5 49299312 3 + 151834684 I e chlSab2.chr27 19964429 0 - 48547382 C e macFas5.chr5 20891039 0 + 189454096 C e rheMac3.chr5 16841246 0 + 184069350 C e calJac3.chr3 21325612 0 - 190850796 C e canFam3.chr3 3890154 495 - 91889043 I e papAnu2.chr5 16481711 0 + 178775436 C e nomLeu3.chr20 20374401 0 - 85365473 C a score=5005.000000 s hg38.chr4_KI270790v1_alt 200633 55 + 220246 tattttattttattttattttattttattttattttattttattttattttattt s panTro4.chr4 21589857 55 + 193495092 tattttattttattttattttattttattttattttattttattttattttattt i panTro4.chr4 C 0 C 0 e mm10.chr5 49299312 3 + 151834684 I e chlSab2.chr27 19964429 0 - 48547382 C e macFas5.chr5 20891039 0 + 189454096 C e rheMac3.chr5 16841246 0 + 184069350 C e calJac3.chr3 21325612 0 - 190850796 C e canFam3.chr3 3890154 495 - 91889043 I e papAnu2.chr5 16481711 0 + 178775436 C e nomLeu3.chr20 20374401 0 - 85365473 C e ponAbe2.chr4 21765344 25 + 198332218 I a score=0.000000 s hg38.chr4_KI270790v1_alt 200688 188 + 220246 tattttattttattttattttattttattttattttattttattttattttattttattttattttattttattttattttattttattttattttattttattttattttattttattttattttattttattttattttattttattttattttattttattttattttattttattttattttat e mm10.chr5 49299312 3 + 151834684 I e chlSab2.chr27 19964429 0 - 48547382 C e macFas5.chr5 20891039 0 + 189454096 C e rheMac3.chr5 16841246 0 + 184069350 C e calJac3.chr3 21325612 0 - 190850796 C e canFam3.chr3 3890154 495 - 91889043 I e papAnu2.chr5 16481711 0 + 178775436 C e nomLeu3.chr20 20374401 0 - 85365473 C e ponAbe2.chr4 21765344 25 + 198332218 I e panTro4.chr4 21589912 0 + 193495092 C a score=1408.000000 s hg38.chr4_KI270790v1_alt 200876 53 + 220246 tttattttattttattttattttattttattttattttattttattttattta s nomLeu3.chr20 20374401 49 - 85365473 TGTATtttatttatttatttatttatttattta--tttattta--tttattta i nomLeu3.chr20 C 0 C 0 e mm10.chr5 49299312 3 + 151834684 I e chlSab2.chr27 19964429 0 - 48547382 C e macFas5.chr5 20891039 0 + 189454096 C e rheMac3.chr5 16841246 0 + 184069350 C e calJac3.chr3 21325612 0 - 190850796 C e canFam3.chr3 3890154 495 - 91889043 I e papAnu2.chr5 16481711 0 + 178775436 C e ponAbe2.chr4 21765344 25 + 198332218 I e panTro4.chr4 21589912 0 + 193495092 C a score=273.000000 s hg38.chr4_KI270790v1_alt 200929 1 + 220246 t s ponAbe2.chr4 21765369 1 + 198332218 t i ponAbe2.chr4 I 25 C 0 s nomLeu3.chr20 20374450 1 - 85365473 t i nomLeu3.chr20 C 0 C 0 e mm10.chr5 49299312 3 + 151834684 I e chlSab2.chr27 19964429 0 - 48547382 C e macFas5.chr5 20891039 0 + 189454096 C e rheMac3.chr5 16841246 0 + 184069350 C e calJac3.chr3 21325612 0 - 190850796 C e canFam3.chr3 3890154 495 - 91889043 I e papAnu2.chr5 16481711 0 + 178775436 C e panTro4.chr4 21589912 0 + 193495092 C a score=157394.000000 s hg38.chr4_KI270790v1_alt 200930 335 + 220246 -ttttgagatggagtctggctgtgtcgcccaggctggagtgcagtggccccatctgggctcactgcaagctccgcctcccgggttcactccattctcctgccttatcttcccaagtacctgggactacaccaggttcacgccattctcctacctcaacctcccaagtacctgggactacaggcgcccgccatcatgcccggctaatttttctatttttagtagacacggggtttcaccgtgttggccaggatggtcttgctctcctgaccttgtgatccgcccaccttggcctcccaaagtgctaggattacaggtgtgagccaccgcgcccagcc s panTro4.chr4 21589912 335 + 193495092 -ttttgagacggagtctggctctgtcgcccaggctggagtgcggtggccccatctgggctcactgcaagctccgcctcccgggttcactccattctcctggcttatcctcccaagtacctgggactacaccaggttcacgccattctcctacctcaaccccccaagtacctgggactacaggcgcccgccatcatgcccggttaatttttctatttttagtagagacggggtttcaccgtgttagccaggatggtcttgatctcctgaccttgtgatccgcccacctcggcctcccaaagtgctaggattacaagtgtgagccaccgcgcccggcc i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21765370 335 + 198332218 -tttttagacggagtctggctctgtcgcccaggctggagtgcagtggccccatctgggctcactgcaagctctgcctcccgggttcactccattctcctgcctcagcctcccaagtacctgggactacaccaggttaacgccattctcctgcctcagcctcccaagtacctgggactacaggcgcccgccatcacgcccggctaatttttctatttttagtagagacggggtttcactgtgttagccaggatggtcttgatctcctgaccttgtgatccgcccgcctcagcctcccaaagtgttaggattacaggtgtgagccactgcgcctggcc i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20374451 285 - 85365473 tttttgagatggattctggctctgtcgcccaggctggagtgcagcggccccatctgggctcactgcaagctccgcctt---------------------------------------------------ccaggttcacgccattctcctgcctcagcctcccaagtacctgggactacaggtgcccgccatcatgcccggctaatttttctatttttagtagagatggggtttcaccgtgttagccaggatggtcttgatctcctgaccttgtgatccgcccacgtcggcctcccaaagtgctaggattacaggcatgagccaccgcgcccggcc i nomLeu3.chr20 C 0 C 0 e mm10.chr5 49299312 3 + 151834684 I e chlSab2.chr27 19964429 0 - 48547382 C e macFas5.chr5 20891039 0 + 189454096 C e rheMac3.chr5 16841246 0 + 184069350 C e calJac3.chr3 21325612 0 - 190850796 C e canFam3.chr3 3890154 495 - 91889043 I e papAnu2.chr5 16481711 0 + 178775436 C a score=8806.000000 s hg38.chr4_KI270790v1_alt 201265 4 + 220246 TGAT s panTro4.chr4 21590247 4 + 193495092 TGAT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21765705 4 + 198332218 TGAT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20374736 4 - 85365473 TGAT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16841246 4 + 184069350 TGAC i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20891039 4 + 189454096 TGAC i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16481711 4 + 178775436 TGAC i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19964429 4 - 48547382 TGAC i chlSab2.chr27 C 0 C 0 s canFam3.chr3 3890649 4 - 91889043 TAAA i canFam3.chr3 I 495 C 0 e mm10.chr5 49299312 3 + 151834684 I e calJac3.chr3 21325612 0 - 190850796 C a score=19670.000000 s hg38.chr4_KI270790v1_alt 201269 7 + 220246 GTATTTT s panTro4.chr4 21590251 7 + 193495092 GTATTTT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21765709 7 + 198332218 GTACTCT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20374740 7 - 85365473 GTATTTT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16841250 7 + 184069350 GTATTTC i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20891043 7 + 189454096 GTATTTC i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16481715 7 + 178775436 GTATTTC i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19964433 7 - 48547382 GTATTTC i chlSab2.chr27 C 0 C 0 s mm10.chr5 49299315 7 + 151834684 GTATTGT i mm10.chr5 I 3 C 0 s canFam3.chr3 3890653 7 - 91889043 GTATCAT i canFam3.chr3 C 0 C 0 e calJac3.chr3 21325612 0 - 190850796 C a score=2504205.000000 s hg38.chr4_KI270790v1_alt 201276 667 + 220246 ATTTTACACAACCAAGT------TACTGAGCTA--TACT-----------------TTACTGACAAACTATTTCTTGGAGTATGAATGAGGGGGACAACTGCCTCCT--------TAGTGAACTGAACAAAAAAAT-CCCTTCTATGCCAGTTTTGCTCTTTTGTCTTGATACA-----ACATTA---GATG-----TCTCTGACATTTTTGCTACAAAATAAATTATTTTCAACACAGTTTAACAAATATGAATTGGATTTCTTATAGCTTTC-TTATACTGAGCCAAAGAAATAGAAAAATTATATCTGCTCTAAAAATTGAG-AGGACTGCAAATGTCAGGGGTGAGTTGCATCCATC-A--AAAAAAGTCCTAACTGAAAAAAGTTA-TTTTTTCTAAAAATTAATTTGCTTTCTTCCTG--AAAATCTCTACTGTTTCCATGATATGGTTTTCAATCTTTTCTTTGTGCTTCTGATATCATAATTGCA----AAATATTTCACTTGACTC-TGCATTATTTATTCACCCA-TCAGTCAGTCATTTATTAGGGAAGGAACTGTAAAATCAGGTTACTTTGATACGACTTCTCTGATTTCTTCAAGATCAACATTAAAGTGGAAACACCTGGGATCTAAATAACTGGAGAA------AATTTGCATACAAAATGAATTAGCATCACCAT-TAAAAAGCCTCTTTTATCCTAATCTGAAGTTTATGGGGAGCA s panTro4.chr4 21590258 666 + 193495092 ATTTTACACAACCAAGT------TACTGAGCTA--TACT-----------------TTACTGACAAACTATTTCTTGGAGTACGAATGAGGGGGACAACTGCCTCCT--------CAGTGAACTGAACAAAAAAAT-CCCTTCTATGCCAGTTTTGCTCTTTTGTCTTGATACA-----ACATTA---GATG-----TCTCTGACATTTTTGCTACAAAATAAATTATTTTCAACACAGTTTAACTA-TAAGAATTGGATTTCTTATAGCTTTC-TTATACTGAGCCAAAGAAATAGAAAAATTATATCTGCTCTAAAAATTGAG-AGGACTGCAAATGTCAGGGGTGAGTTGCATCCATC-A--AAAAAAGTCCTAACTGAAAAAAGGCA-TTTTTTCTAAAAATTAATTTGCTTTCTTCCTG--AAAATATCTACTGTTTCCATGATATGGTTTTCAATCTTTTCTTTGTGCTTCTGATATCATAATTGCA----AAATATTTCACTTGACTC-TGCATTATTTATTCACCCA-TCAGTCAGTCATTTATTGGGGAAGGAACTGTAAAATCAGGTTATTTTGATACGACTTCTCTGATTTCTTCAAGATCAACATTAAAGTGGAAACACCTGGGATCTAAATAACTGGAGAA------AATTTGCATACAAAATGAATTAGCATCACCAT-TAAAAAGCCTCTTTTATCCTAATCTGAAGTTTATGGGGAGCA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21765716 667 + 198332218 ATTTTACACAACGAAGT------TACTGAGCTA--TACT-----------------TTACTGACAAACTATTTCTTGGAGTATGAATGAGGGGGACAACTGCCTCCT--------TAGCGAACTGAACAAAAAAAT-CCCTTCTATGCCAGTTTTGCTCTTTTGTCTTGACACA-----GCATTA---GATG-----TCTCTGACATTTTTGCTACAAGATAAATTATTTTCAACTCAGTTTAACAAATATGAATTGGATTTCTTATAGCTTTC-CTATATCGAGCCCAAGAAATAGAAAAATTATATCTGCTCTAAAAATTGAG-AGGACTGCAAATGTCAGGGGTGAGTTGCATCCATC-A--AAAAAAGTCCTAACTGAAAAAAGTTA-TTTTTTCTAAAAATTAATTTGCTATCTTCCTG--AAAATATCTACTGTTTCCATGATATGGTTTTCAATCTTTTCTTTGTGCTTCTGATATCATAATTGCA----AAATATTTCACTTGACTC-TGCATTACTTATTCACCCA-TCAGTCAGCCATTTATTAGGGAAGGAACTGTAAAATCAGGTTACTTTGATACGACTTCTCTGATTTCTTCAAGATCAACATTAAAGTGGAAACACCTGGGATCTAAATAACTAGAGAA------AATTTGCGTACAAAATGAATTAGCATCACCAT-TGAAAAGCCTCTTTTATCCTAATCTGAAGTTTATGGGGAGCA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20374747 664 - 85365473 ATTTTACACAACCAAGT------TACTCAGCTA--TACT-----------------TTACTGACAAACTATTTCTTGGAGTATGAATGAGGGGGACAACTGCCTCCT--------TAGTGAACTGAACCAAAAAAT-CCCTTCTATGCCAGTTTTGCTCTTTTGTCCTGATAAA-----ATATTA---GATG-----TCTCTGACATTTTTGCTACAAGATAAATTATTTTCAACTCAGTTTAACAAATGTGAATTGGATTTCTTACAGCTTTC-TTATATCGAGCCCAAGAAATAGAAAATTTATATCTGCTCTAAAAATTGAG-AGGACTGCAAATTTCAGGGATGAGTTGCATCCATCAA--AAAAAAGTCCTAACTGAAAAAAGTTA-TTTTTTCTAAAAATTAATTTGCTTTCTTCCTG--AAAATATCTACTGTTTCCATGATATGGTTTTCAATCTTTTCTTTGTGCTTCTGATATCATAATTGCA----AAATATTTCACTTGAGTC-TGCATTATTTATTCACCCA-TCAGTCAATCATTTATTAG----GGAACTGTAAAATCAGGTTACCTTGATACGACTTCTCTGATTTCTTTAAGATCAACATTAAAGTGGAAACACCTGGGATCTAAATAACTGGAGAA------AATTTGCATACAAAATGAATTAGCATCACCAT-TGAAAAGCCTCTTTTATCCTAATCTGAAGTTTATGGGGAGCA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16841257 669 + 184069350 ATTTTATACTACCAAGT------TACTGAGTTA--TACT-------------TTA-TTATTGACAAACTATTTCTTGGAGTATGAATGAGGGGGACAACCGCCTCCT--------TAGTGAACTGAACAAAAAAAT-CCCTTCTATGCCAGTTTTGCTCTTTTGTCTTGATACA-----ACATTA---GATG-----TCTCTGACATTTGTGCTACAAGATAAATTATTTTCAACTCAGTTTAACAAATGTGAGTTGGATTTCTTATAGCCTTC-TTATATCGAGCCCAAGAAATAGAAAAATTATATCTGCTCTAAAAATTGAG-AGGACTGCAAATGTTAGGGGTGAGTTGCATCCATC-A--AAAAAAGTCCTAACTGAAAAAACTTATTTTTTTCTAAAAATTACTTTGCTTTCTTCCTG--AAAATATCTACTGTTTCCGTGATATGGCTTTCAATCTTTTCTTTGTGTTTCTGATATCATAATTGCA----AAATATTTCACTTGACTC-TGTATTATTTATTCACCCA-TCAGTCAATCATTTATTAGGGAAGGAACTGTAAAATCAGGTTACTTTGATACGACT--TCTGATTTCTTTAAGATCAACATTAAAGTGGAAACACCTGGGATCTAAATAACTAGAGGA------AATTTGTGTACAAAATGAATTAGTATCACCAT-TGAAAAGCCTCTTTTATCCTAATCTGAAGTTGATGGGGAGCA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20891050 669 + 189454096 ATTTTATACTACCAAGT------TACTGAGTTA--TACT-------------TTA-TTATTGACAAACTATTTCTTGGAGTATGAATGAGGGGGACAACCGCCTCCT--------TAGTGAACTGAACAAAAAAAT-CCCTTCTATGCCAGTTTTGCTCTTTTGTCTTGATACA-----ACATTA---GATG-----TCTCTGACATTTGTGCTACAAGATAAATTATTTTCAACTCAGTTTAACAAATGTGAATTGGATTTCTTATAGCCTTC-TTATATCGAGCCCAAGAAATAGAAAAATTATATCTGCTCTAAAAATTGAG-AGGACTGCAAATGTTAGGGGTGAGTTGCATCCATC-A--AAAAAAGTCCTAACTGAAAAAACTTATTTTTTTCTAAAAATTACTTTGCTTTCTTCCTG--AAAATATCTACTGTTTCCGTGATATGGCTTTCAATCTTTTCTTTGTGTTTCTGATATCATAATTGCA----AAATATTTCACTTGACTC-TGTATTATTTATTCACCCA-TCAGTCAATCATTTATTAGGGAAGGAACTGTAAAATCAGGTTACTTTGATACGACT--TCTGATTTCTTTAAGATCAACATTAAAGTGGAAACACCTGGGATCTAAATAACTAGAGGA------AATTTGTGTACAAAATGAATTAGTATCACCAT-TGAAAAGCCTCTTTTATCCTAATCTGAAGTTGATGGGGAGCA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16481722 671 + 178775436 ATTTTATACTACCAAGT------TACTGAGTTA--TACT-------------TTA-TTATTGACAAACTATTTCTTGGAGTATGAATGAGGGGGACAACCGCCTCCT--------TAGTGAACtgaacaaaaaaaa-cccttctatgccagttttgctcttttgtctTGATACA-----ACATTA---GATG-----TCTCTGACATTTGTGCTacaagataaattattttcaactcAGTTTAACAAATGTGAATTGGATTTCTTATAGCCTTC-TTATATCGAgcccaagaaatagaaaaatcatatCTGCTCTAAAAATTGAG-AGGACTGCAAATGTTAGGGGTGAGTTGCATCCATC-a--aaaaaaGTCCTAActgaaaaaacttatttttttctaaaaattactttGCTTTCTTCCTG--AAAATATCTACTGTTTCCGTGATATGGCTTtcaatcttttctttgtgtttctgataTCATAATTGCA----AAATATTTCACTTGACTC-TGTATTATTTATTCACCCA-TCAGTCAATCATTTATTAGGGAAGGAACTGTAAAATCAGGTTACTTTGATACgacttctctgatttctttaagatCAACATTAAAGTGGAAACACCTGGGACCTAAATAACTGGAGGA------AATTTGTGTACAAAATGAATTAGTATCACCAT-TGAAAAGCCTCTTTTATCCTAATCTGAAGTTGATGGGGAGCA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19964440 670 - 48547382 ATTTTATACTACCAAGT------TACTGAGTTA--TACT-------------TTA-TTATTGACAAACTATTTCTTGGAGTGTGAATGAGGGGGACAACCGCCTCCT--------TAGTGAACTGAACAAAAAAAACCCCTTCTATGCCAGTTTTGCTCTTTTGTCTTGATACA-----ACATTA---GATG-----TCTCTGACATTTGTGCTACAAGATAAATTATTTTCAACTCAGTTTAACAAATGTGAATTGGATTTCTTATAGCCTTC-TTATATTGAGCCCAAGAAATAGAAAAATTATATCTGCTCTAAAAATTGAG-AGGACTGCAAATGTTAGGGGTCAGTTGCATCCATC-A--AAAAAAGTCCTAACTGAAAAAACTTATTTTTTTCTAAAAATTACTTTGCTTTCTTCCTG--AAAATATCTACTGTTTCCGTGATATGGCTTTCAATTTTTTCTTTGTGTTTCTGATATCATAATTGCA----AAATATTTCACTTGACTC-TGTATTATTTATTTACCCA-TCAGTCAATCATTTATTAGGGAAGGAACTGTAAAATCAGGTTACTTTGATACAACT--TCTGATTTCTTTAAGATCAACATTAAAGTGGAAACACCTGGGATCTAAATAACTAGAGGA------AATTTGTGTACAAAATGAATTAGTATCACCAT-TGAAAAGCCTCTTTTATCCTAATCTGAAATTGATGGGGAGCA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21325612 674 - 190850796 ATACTACACTACCAAGT------TACTCAGCTA--TCCT----------TCTTTG-TTACTGACAAACTATTTCTTGGAGTATAAATGAGGGGGACAGCCACCTCCTTAGTGAACTAGTGAACTGAAC-AAAAAAT-CCCTTCTATGCCAGTTTTGCTCTTTTCTCTTGATACA-----ACATTAGACGATG-----TCTCTGACATTTGTGCTACAAGATAAA-TATTTTCAACTCAATTTAACAAATGTGGAATGGGTTTCTTATAGCTCTC-TTATATTGGGCCAAGGGAATAGAAAAATTGCATCTACTCTAAAAATTGAG-AGGACTCTAAATGTCAGGGTTGAGTTGTATCCATC-AATAAAAAAGTCCTAACTGAAAAGT-----TGTTTTCTAAAAATTAATTTGCTTCCTTCTTG--AAAATATCTACTGTTT-CATAATATGGTTTTCAATCTTTTCTTTGTACTTCTGATATCATAATTGCA----AAATATTTCACTTGACTC-TGCATTATTTATTCACCCA-TCAGTCAAATATTTATTAGGGAAGGAACTGTAAAATCAGGTTACTTGGATACAACTTCTCTGATTTCTTTAAGGTCAACATGAAAGTGCAGACACTTGGGATCTAAATAACTGGAGGG------CATTTGTGCACAAAATGTGTTAGTATCACCAT-TGAAAAGCCTCTTTTATCCTAAT-----GTTTATGGGGAGCT i calJac3.chr3 C 0 C 0 s mm10.chr5 49299322 679 + 151834684 ATTTTATGGTACCCAGTTTTATATAACAAGCCACCTACT-------------TTCTCTGTTGACAAACCATTCCTTTGGGTGAGCA-------GACAGCATTCTCCT--------TAGTGAAGTGG---AACAAAA-TCCCTCTATGCTACTTTTACTCCTCTGTCTTCAGACATTGGGACACTG---AGTG-----TCTTCAACATTTCTGCCACAGGATACATTGCTTTCAATTCACTTTCAGAAATGTGGGTTGAGATTCTTGAGGCTGCCTTTATATCAAGCTCAAGAAACAGGAAAATCCTATGTGCTCTAAAAATTGTGTGGGAGTTCAAATGTCAGGGGTGAGACACATTACTC-A--ACAGAAGTCCTGACTGGAAAAAGTTA---TCACATAAAAATTAATTTGCTTTTCTCTTGAAAAAAAATCTGCCATTTTCATCATATGCTTTTC-ATTTTTTCACTGTGCTTCTGGTACTATAATTGCAAGGGAAAAAAGTCACTTAGCTCTTACATTATTCATCCAAACATTCATTCAAACATTTATTA---AAGGAACTCTAGAATGAAGTTACTTTGATAGAATTTCTCTGATATCTCTACAATCAGCACTAAAAT-----CATTGGAGGTCTAGCTAAGTAGAGGAACTAGCAATTACTGTGCAGCATTTATTAATATCTCCAT-GAGAAAAATATCTTTCCAATGAGCTCTATTTTATAGGTAGCA i mm10.chr5 C 0 I 1048 s canFam3.chr3 3890660 672 - 91889043 ATTTCAGAGTATCAAAT------TACTA---TA--TACTGTTGTGTGCAGCTTCT-TTTTGGCCAAACTATGTTTTTGAGAATGGATGAGAC-AACATCATTTTCCT--------TGGTGACCTGAA--ACAAAAT-CCCTTCTATTCAATTTTTGCTCTCTTCTTTCCACACA-----ACGTTA---GATGGTGTATCTTTGCCATATCTGCTACAAGATAAATGATTTTCAATTCAGTTTAACAAATGTGGATTGGGTGTCTTATAGCTTTC-CTATATCAAGCCCAAGAAGTAGAAGAATTATATCTGCTCTAAAACTGTAT-AGGTCTACAAATGTCAGGGGTGAGATGCATCAGTC----AAAAAAGTACTCACATGGAAAAGtta---ttttataaaaattaatttGCTTTCTTCCTG--AAAAGATCTGCAGTTTTCATAATGTGTTTTTC--TTTTTTGTGTGTGCTTCTGGTAGCATATTTGCA----AAATATTTAACTTGACTCCTACATTATTCATTCACTCATTCATTCAAACATTTTTTA----AGGAACTGTAAAATCAGGTTACTTTGATACAACTTCTCTGATTTCTTTAAGATCAGCATTAAAGTGGAGACACCTGGGATC----TAACTGGACGG------AATTAGTGTTCAAAATTTATTAATGTGGCCATGCGAAAAGCCTCTTCTATAATGATCTTAATTTTATAGGGAGCA i canFam3.chr3 C 0 C 0 a score=66015.000000 s hg38.chr4_KI270790v1_alt 201943 17 + 220246 GCTAAAACTAAGAATAA s panTro4.chr4 21590924 17 + 193495092 GCTAAAACTAAGAATAA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21766383 17 + 198332218 GCTAAAACTAAGAATAA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20375411 17 - 85365473 GCTAAAACTAAGAATAA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16841926 17 + 184069350 GCTAAAACTAAGAATAA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20891719 17 + 189454096 GCTAAAACTAAGAATAA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16482393 17 + 178775436 GCTAAAactaagaataa i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19965110 17 - 48547382 GCTAAAACTAAGAATAA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21326286 17 - 190850796 GCTAAAACTAAGAATAA i calJac3.chr3 C 0 C 0 s canFam3.chr3 3891332 17 - 91889043 GCTAAGGCTAAGAAAGA i canFam3.chr3 C 0 C 0 e mm10.chr5 49300001 1048 + 151834684 I a score=49844.000000 s hg38.chr4_KI270790v1_alt 201960 13 + 220246 AACAAATCATTCT s panTro4.chr4 21590941 13 + 193495092 AACAAATCATTCT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21766400 13 + 198332218 AACAAATCATTCT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20375428 13 - 85365473 AACAGATCATTCT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16841943 13 + 184069350 AACAAATCAGTCT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20891736 13 + 189454096 AACAAATCAGTCT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16482410 13 + 178775436 aacaaatcagTCT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19965127 13 - 48547382 AACAAATCAGTCT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21326303 13 - 190850796 AACAAATCATTCT i calJac3.chr3 C 0 C 0 s mm10.chr5 49301049 13 + 151834684 AAAAAAACATTCT i mm10.chr5 I 1048 C 0 s canFam3.chr3 3891349 13 - 91889043 GCCAAATGATTCT i canFam3.chr3 C 0 I 3 a score=11916.000000 s hg38.chr4_KI270790v1_alt 201973 3 + 220246 TGG s panTro4.chr4 21590954 3 + 193495092 TGG i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21766413 3 + 198332218 TGG i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20375441 3 - 85365473 TGG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16841956 3 + 184069350 TGG i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20891749 3 + 189454096 TGG i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16482423 3 + 178775436 TGG i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19965140 3 - 48547382 TGG i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21326316 3 - 190850796 TGG i calJac3.chr3 C 0 C 0 s mm10.chr5 49301062 3 + 151834684 TGA i mm10.chr5 C 0 C 0 e canFam3.chr3 3891362 3 - 91889043 I a score=258011.000000 s hg38.chr4_KI270790v1_alt 201976 71 + 220246 TCAGCTTTGATGGTCAGACAGTTGTCTACGGAACCCCAAG-----TCTATGAG-CAAAGTGACTCAGTTTACGTATG s panTro4.chr4 21590957 71 + 193495092 TCAGCTTTGATGGTCAGACAGTTGTCTACGGAACCCCAAG-----TCTATGAG-CAAAGTGACTCAGTTTACGTATG i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21766416 70 + 198332218 TCAGCTTTGATGGTCAGACAGTTGTCTATGGAACCCCAAG-----TCTATGAG-CAAAGTAACTCAGTTTATGTAC- i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20375444 71 - 85365473 TCAGCTTAGATGATCAGACAGTTGTCTACGGAACCCCAAG-----TCTATGAG-CAAAGTGACTCAGTTTATGTACG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16841959 71 + 184069350 TCAGCTTTGACGGTCAGACAGTTGTCTACAGAACCCCAAG-----TCTATTAG-CAAAGTGGCTCAGTTTATGTACG i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20891752 71 + 189454096 TCAGCTTTGACGGTCAGACAGTTGTCTACAGAACCCCAAG-----TCTATTAG-CAAAGTGGCTCAGTTTATGTACG i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16482426 71 + 178775436 TCAGCTTTGATGGTCAGAGAGTTGTCCACAGAACCCCAAG-----TCTATTAG-CAAAGTGGCTCAGTTTATGTATG i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19965143 71 - 48547382 TCAGCTTTGATGGTCAGAGAGTTGTCTACAGAACCCCAAG-----TCTATTAG-CAAAGTGGCTCCGTTTATGTACG i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21326319 72 - 190850796 CCAGCTTTGAAGGTCAGACAGTTGTCTACAGGACCCCCAG----ATCTATTAG-CAAAGTGGTTCAGTTCATGTACA i calJac3.chr3 C 0 C 0 s mm10.chr5 49301065 76 + 151834684 TCAGCTATGATGGTCAAACAGCTGTGTAGGGAACCACAAATCTAATCTACTAA-CAATGTAATTCAGTTGATGTATG i mm10.chr5 C 0 C 0 s canFam3.chr3 3891365 71 - 91889043 TCAGCTCTGATGATCACAAAGTTGACTA-GGGGTCCCAGC-----TTTATCAGCCAAAATGGCTCAGTCTACACATG i canFam3.chr3 I 3 I 15 a score=155899.000000 s hg38.chr4_KI270790v1_alt 202047 65 + 220246 GGGCCAACATAATAGTC-ttt-----ttttaattttaatttttatttttgagatagagtcttgttctgtct s panTro4.chr4 21591028 65 + 193495092 GGGCCAACATAATAATC-ttt-----ttttaattttaatttttatttttgagatagagtcttgttctgtct i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21766486 65 + 198332218 GGGCCAACATAATAGTC-TTT-----TTTCAATTTTAAtttttatttttgagatagagtcttgttctgtct i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20375515 65 - 85365473 GGGCCAACATAATAGTC-ttt-----ttttaattttaatttttatttttgagatagagtcttgctctgtct i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16842030 59 + 184069350 GGGCCAACATAATAGTC-ttt-----ttttaatttta------atttttgagatagagtcttgctctgtct i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20891823 59 + 189454096 GGGCCAACATAATAGTC-ttt-----ttttaatttta------atttttgagatagagtcttgctctgtct i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16482497 59 + 178775436 GGGCCAACATAatagtc-ttt-----ttttaatttta------atttttgagatagagtcttgctctgtct i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19965214 60 - 48547382 GGGCCAACATAATAGTCtttt-----ttttaatttta------atttttgagatagagtgttgctctgtct i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21326391 68 - 190850796 GGGCCAACATAATCATC-tttttttattttaattttaatattaatttttgatacagagtctca--ctgttg i calJac3.chr3 C 0 C 0 s mm10.chr5 49301141 35 + 151834684 AAAAAAAACTACTATCC-TTT-----------------------------------AGGtttgttttgttt i mm10.chr5 C 0 C 0 e canFam3.chr3 3891436 15 - 91889043 I a score=744054.000000 s hg38.chr4_KI270790v1_alt 202112 268 + 220246 cccaggctggagtgcaatggcgtgatctcggctcactgcaccctctgcctcccgggttcaagcgattcttctgcctcagtctcctgagtggctgtgattacaggtgcatgccactgtatctggctcattttttgtattttgagtagagacagggtttcgcagtgttggccacgctggtctcaaactcctgacctcaggtaat-cgcccaccttgacctcccaaagtgct-ggattacaggtgggagccactgccaccgTGCTGGGCCGG---T s panTro4.chr4 21591093 268 + 193495092 cccaggctggagtgcaatggcgtgatctcggctcactgtaccctctgcctcccgggttcaagcgattcttctgcctcagtctcctgagtggctgtgattacaggtgcatgccactatatctggctcattttttgtattttgagtagagacagggtttcgcagtgttggccacgctgttctcaaactcctgacctcaggtaat-cgcccaccttgacctcctaaagtgct-ggattacaggtgggagccactgccaccgtgccGGGCCAG---T i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21766551 269 + 198332218 cccaggctggaatgcaatggcgtgatcttggctcactgcaccctctgcctcccgggttcaagcgattcttctgcctcagtctcctgagtggctgtgattacaggtgcatgccaccacatctggctcattttttgtatttcgagtagagacagggtttcaccatgttggccatgctggtctcgaactcctgacctcaggtaat-tgcccgccttgacctcccaaagtgctgggattacaggcaggagccactgcCACTGTGCCAGGCCGG---T i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20375580 269 - 85365473 cccaggctggagtgcaatggcgtgatcttggctcactgcacactctgcctcctgggttcaagtgattcttctgcctcagtctcctgagtggctgtgattacaagtgcatgccaccacatctggctcattttttgtattttgagtagagacagggtttcgccgtgttggccacgctggtctcgaactcctgacctcaggtaat-cgcccaccttgacttcccaaagtgctgggattacaggcgagagccactgccaccgtgccGGGACAG---T i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16842089 270 + 184069350 cccaggctagagtgcaatggtgtgatctcggctccccgcaacctctgcctcccgggttcaagcgattcttccgcctcagcctcctgagtggctataattacaggtgcatgccaccacatctggctcattttttgtattttgagttgagacagggttttgccatgtcggccacgctggtctcgaactcctgacttctggtaatccacccgccttgacctcccaaagtgctgggattacaggcaggagacactgcCACTATGCCGGGAGAG---T i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20891882 269 + 189454096 cccaggctggagtgcaatggtgtgatctcggctccccgcaacctctgcctcccgggttcaagcaattcttccgcctcagcctcctgagtggctataattacaggtgcatgccaccacatctggctcattttttgtattttgagttgagacagggttttgccatgtcggccacgctggtctcgaactcctgacttcaggtaat-cacccgccttgacctcccaaagtgctgggattacaggcaggagacactgcCACTATGCCGGGAGAG---T i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16482556 268 + 178775436 cccaggctggaatgcaatggtgtg-tctcggctccctgcaacgtctgcctcccgggttcaagcgattcttccgcctcagcctcctgagtggctatgattacaggtgcatgccaccacatctggctcattttttgtattttgagttgagacagggttttgccatgtcggccacgctggtctcgaactcctgacttcgggtaat-cacccgccttgacctcccaaagtgctgggattacaggcaggagccactgccaCTATGCCGGGAGAG---T i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19965274 269 - 48547382 cccaggctggagtgcaatggcgtgatctcggctccctgcaacctctgcctcccgggttcaagcgattcttccgcctcagcctcctgagtggctataattacaggtgcatgccaccacatctggctcattttttgtattttgagttgagacagggttttgccatgtcggccacgctggtctcgaactcctgacttcgggtaat-cacctgccttgacctcccaaagtgctgggattacaggcaggagtcactgcCACTATGCCGGGAGAG---T i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21326459 270 - 190850796 cccaggctagagtgcaacggcatgatctcagctcactgcaaactccaccttct-ggttcaagtgattcttctgtgtcagccccgcgagtagctgggattacaggcacatggcaccacacctggct-agtttctgtatttttagtacagacaggtttttgccatgttggtcaggctggtctcgaactccccacctcaggtgat-catgcgcctccgcctcccaaagtgctgggattacaggtacaagccaccaccaccctgccTAGGCAAACTC i calJac3.chr3 C 0 C 0 e mm10.chr5 49301176 0 + 151834684 C e canFam3.chr3 3891436 15 - 91889043 I a score=5972223.000000 s hg38.chr4_KI270790v1_alt 202380 1826 + 220246 AGTCTTTAGTTTCTGAGAAGAGGC-AGAAACGGCTAGTTCCTTAAAACCCTGTAATGAGGAG---TTACTGGGTAAAGTTAGAAAG----CTTAATTATAAGATGGTCTGATGGACATGTTTACCCCCAACGAGTGAGTCAATTTAGATCACATTTTCTGCTTTCCAGACTGATTATTAACCCATTT--GTTTCCTCACCTCCAAAGCTGGTGGTGACTCATC----CCATGCTAAAACGGCCTTGTTGAAGGGAACAAATGGCTGTGACCTGATAT---------TAATGTCACTTTGTTCCT--------------ATAGCCATTCCTCCTTTTGGGGTGACTGACTATTAAGAACTCAAGTGTAG-GTAAATTTAGAAATAC------AGAAGCCACTTCTCTCCATACCCAGGTAGACGGAAAGAATCAAGTTCTCATGCTGGGCCAGTGTGCCCACTATCCTTCCAAAGGTGAAACTACCACACTGGAGTTTCTTAATTTATTT--CCCCATCTG--------------------ATGGGTTTC-----AGGGATGCCTGCAAATCTCACCTTTCTCTCTTACACTCATTATTGTCATa-----gt-----gtttctcaaac-tcagcactattttgggccaaata-----ttttggtttgttttggaggggtat---cctgtgtatt-----gtaggatgat-----------------tagcagcatccttggcctc-tatctactaaatatcagaagtattctccca-ctgtagcaa-taaaaatgttgctagacattctctaatgtcccctaggggtaatatcaccctgga---------tagagaaccactCTACTAAGTCTACGAACTTGACTAATGAGAGTGCCATGGATTCTTGATTTCAGCCCTAGTGACTCAGATTTTACACATGA-TTTTCACAATATTATCTATATAATTTGCTATATATTA--ACTATATAAC-----------------TCCCTAGAATACACTGGCTTATAAGCAATAAATCAAATGCACT--TGG---------------------ATTTAGCATTGAGCATTTTATAACCCTCAAAAAAAGCTGAGCCTTTGTTTTTGTAAGAATTTGGCTATGGCAGAACCAATGAGACCATACCTCCCCAAAATAAAACCCATCTTGCAAG-TTATGACCACCT------ATATTCAAATGGTAGCCTAGGACTGGA-------------------------GCAAAGAGCAA------------------------------------------------------------------------------------------ACAGCTATCAGTTCTTAATT---------------------------------TTACTCTTGATTGCTTCT-TATTTTTCTTTACT---------GGGTTGAACTGATCAGACTTTGCACATATTAGCCTATGTGACCTAATTCTTTTCCTCCTATGTTTTCTG-TTTCAAGGCTCTTGATCACTGTC-ATTTTCATTGGCCC------C--ACTCCTGC-----GTAATAGTTCCTTCTTTAATATAGTTCTCACT-CCAACTTCTGTTTTATATTCCAAATCTGTGATCGTCAC-TTTTCTCTTTCATCTTTTAA-TGCATCACCAGCTTAGACCTATGGTACCCAGTTGGCCTCAATTCACTAGT---GTCA-----TCCTGGCATCTTTTTGACTTCTCTGTTCTGAATCTGTTCATTTCATGTCATAACAGA-TCACTTAGAACATGAAAAAGTAAGAGAAAGCAATTTAACAAAGGGGCAAAAATAAAA-----------AACCATA------CATTCTCAGAAATAAGCATGCAAACTTTATAACTTCTGAGAACACCACATTATCACATGACAGTGTACCAAGTGTCATTTGCAGTAATGATTTTGAGCCTTCAATAAAGG-AGTATGTGTGCTCTCCTTAAGAAG-----AAAAAA-ATACTA-TATTTAGAAATAGTTTCAACTCATCTGGTTAATATAGCAGTTGCAACACCTGAAGTGATGAGCTCAAATTTTCTGCAAAACACAGTTATGTGAAACACTATGTTACCTAAA-----TATTTATTAGCCAATTTGTATTTATGCTTATTATGTTGAATTGTATATGGTTGCTAGTT s panTro4.chr4 21591361 1824 + 193495092 AGTCTTTAGTTTCTGAGAAGAGGC-AGAAACGGCTAGTTCCTTAAAACCCTGTAATGAGGAG---TTACTGGGTAAAGTTAGAAAG----CTTAATTATAAGATGGTCTGATGGACATGTTTACCCCCAACGAGTGAGTCAATTTAGATCACATTTTCTGCTTTCCAGATTGATTATTAACCCATTT--GTTTCCTCACCTCCAAAGCTGGTGGTGACTCATC----CCATGCTAAAACGGCCTTGTTGAAGGGAACAAATGGCTGTGACCTGATAT---------TAATGTCACTTTGTTCCT--------------ATAGCCATTCCTCCTTTTGGGGTGACTGGCTATTAAGAACTCAAGTGTAG-GTAAATTTAGAAATAC------AGAAGCCACTTCTCTCCATACCCAGGTAGACGGAAAGAATCAAGTTCTCATGCTGGGCCAGTGTGCCCACTATCCTTCCAAAGGTGAAACTACCACATTGGAGTTTCTTAATTTATTT--CCCCATCTG--------------------ATGGGTTTC-----AGGGATGCCTGCAAATCTCACCTTTCTCTCTTACACTCATTATTGTCATa-----gt-----gtttctcaaac-tcagcactattttgggccaaata-----ttttggtttgttttggaagggtac---cctgtgtatt-----gtaggatgat-----------------tagcagcatccttggcctc-tatccactaaatgtcagaagtattctccca-ctgtagcaa-taaaaatgttgctagacattctctaatgtcccctaggggtaatatcaccctgga---------tagagaaccactCTACTAAGTCTACGAACTTGATTAATGAGAGTGCCATGGATTCTTGATTTCAGCCCTAGTGACTCAGATTTTACACATGA-TTTTCACAATATTATCTATATAATTTGCTATATATTA--ACTATATAAC-----------------TCCCTAGAATACACTGGCTTATAAGCAATAAATCAAATGCACT--TGG---------------------ATTTAGCATTGAGCATTTTATAACCCTCAAGAAAAGCTGAGCCTTTGTTTTTGTAAGAATTTGGCTATGGCAGAACCAATGAGACCATACCTCCCCAAAATAAAACCCATCTTGCAAG-TTATGACCACCT------ATATTCAAATGGTAGCCTAGGACTGGA-------------------------GCAAAGAGCCA------------------------------------------------------------------------------------------ACAGCT--CAGTTCTTAATT---------------------------------TTACTCTTGATTGCTTCT-TATTTTTCTTTATT---------GGGTTGAACTGATCAGACTTTGCACATATTAGCCTATGTGACCTAATTCTTTTCCTCCTACGTTTTCTG-TTTCAAGGCTCTTGATCACTGTC-ATTTTCATTGGCCC------C--ACTCCTGC-----GTAATAGTTCCTTCTTTAATATAGTTCTCACT-CCAACTTCTGTTTTATATTCCAAATCTGTGATCGTCAC-TTTTCTCTTTCATCTTTTAA-TGTATCACCAGCTTAGACCTATGGTACCCAGTTAGCCTCAATTCACTAGT---GTCA-----TCCTGGCATCTTTTTGACTTCTCTGTTCTGAATCTGTTCATTTCATGTCATAACAGA-TCACTTAGAACATGAAAAAGTAAGAGAAAGCAACTTAACAAAGGGGCAAAAATAAAA-----------AACCATA------CATTCTCAGaaataagcatgcaaactttataacttctgagaacaccacattatcacatgacagtgtaccaagtgtcatttgcagtaatgattttgagccttcaataaagg-agtatgtgtgctctccttaagaag-----aaaaaa-atacta-tatttagaaatagtttcaactcatctggttaatatagcagttgcaacacctgaagtgatgagctcgaattttctgcaaaacacagttatgtgaaacaCTATGTTACCTAAA-----TATTTATTAGCCAATTTGTATTTATGCTTATTATGTTGAATTGTATATGGTTTCTAGTT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21766820 1797 + 198332218 AGTCTTTAGTTTCTGAGAAGAGGT-AGAAACTGCTAGTTCCTTGAAACCCTATAATGAGGAG---TTACTGGGTAAAGTTAGAAAG----CTTAATTATAAGATGGTCTGATGGGCATGTTTACCCCCAACAAGTAAGTCAGTGTAGATCACATTTTCTGCCTTCCAGCCTGATTATTAACCCATTT--GTTTCCTCACCTCCAAAGCTGGTGGTGACTCATC----CCATGCTAAAATGGCCTTGTTGAAGGGAACAAATGGCTGTGACCTGATAT---------TAATGTCACTTTGTTCCT--------------ATAGCCATTCCTCCTTTTCGGGTGACTGACTATTAAGAACTCAAGTGTAG-GTAAATTTAGAAATAC------AGAAGCCACTTCTCTTCATACCCAGGTAGACGGACAGAAGCAAGTTCTCATGCTGGGTCGGTGTGCCCACTGTCCTTCCAAAGGTGAAACTACCACATTGGAGTTTCTTAATTTATTT--TCCCATCTG--------------------ATGGGTTTC-----AGAGATGCCTGCAAATCTCACCTTTCTCTCTTACACTCATCATTGTCGTa-----gt-----gtttctcaaac-tcagcactattttgggccaaata-----ttttggtttgttttggaggggtac---tctgtgtatt-----gtaggatgat-----------------tatcagcatccttggcctc-catctactaaatgtcagaagtattctccca-ctgtggcaa-caaaaatgttgccagacattctctaatgtctcctaggggtaatatcaccctgga---------tagagaaccactCTACTAAGTCTATGAACTTGATTAATGAGAGTGCCACGGATTCTGGATTTCAGCCCTAGTGACTCAGATTTTACACGTGATTTTTCACAATATTATCTATATAATTTGCTATATATTA--ACTATATAAC-----------------TCCCTAGAATACATTGGCTTATAAGCAATAAATCAGATGCACT--TCG---------------------ATTTAGCATTGAGCATTTTATAACCCTCAAGAAAACCTGAGCC------TTTGTAAGAATTCAGTTATGCCAGAACCAATGAGACCATACCTCCCCAATATAAAACCCATCTTGCAAG-TTATAACCACCT------ATATTCAACTAGTAGCCTAGGACTGGA-------------------------GCAAAGAGCCA------------------------------------------------------------------------------------------A---------------------------------------------------------TTTGATTGCTTCT-AATTTTTCTTTATT---------GGGTTGAACTAATTAGACTTTGCACATATTAGCCTATGTGACCTAATTCTTTTCTTCCTATGTTTTCTC-TTTCAAGGCTCTTGATCACTGTC-ATTTTCATTGGCCC------C--ACTCCTGC-----GTAATAGTTCCTTCTTTAATATAGTTCTCACT-CCGACTTCTGTTTTATATTCCAAATCTGTGATCATCAC-TTTTCTCTTTCGTCTTTTAA-TGCATCACCAGCTTAGACCTATGGTACCCAGCTGGCCTCGATTCACTAGT---GTCA-----TCCTGGCATCTTTTTGACTCCTGTGTTCTGAATCTCTTCATTTCATGTCATGACAGA-ACACTTAGAACATGAAAAAGTAAGGGAAAGCAATTTAACAAAGGGGCAAAAATAGAA-----------AACCACA------CATTCTCAGaaataagcatgcaaactttataacttctgggaacaccacattatcacacgacagtgtaccaagtgtcatttgcagtaatgattttgagccttcaataaagg-agtatgtgtgctctccttaagaag-----aaaaaa-atacta-tatttagaaatagtttcaaatcatctggttaatatagaagttgcaacacctgaaaggataagctcgaattttctgcaaaacacagttatgtgaaacaCTATGTTACCTAAA-----TATTTATTAGCCAATTTGTATTCATGCTTATTATGTTGAATTGTATATGATTGCTAGTT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20375849 1804 - 85365473 AGTCTTTAGTTTCTGAGAAAAGGC-AGAAACTGCTAGTTCCTTGAAACCCTATAATGAGGAG---TTATTGGGTAAAGTTAGAAAG----CTTAATTATAAGATGGTCTGATGGACATGTTTACCTCCAACGAATGAGTCAGTTTAGATCACATTTTCTGCCTTCCAGCC------TTAACACATTT--GTTTCCTCACCTCCAAAGCTGGTGGTGACTCATC----CCATGCTAAAATGGCCTTGTTGAAGGGAACAAATGGCTGAGACCTGATAT---------TAATGTAACTTTGTTCCT--------------ATAGCCATTCCTCCTTTTGGGGTGACTGACTATTAAGAACTCAAGTGTAG-GTAAATTTAGAAATAC------AGAAGCCGCTTCTCTCCATACCCAGGTAGACGGAGAGAAGCAAGTTCTCATGCTGGGCCGGTGTGCCCACTGTCCTTCCAAAGGTGAAACTACCACATTGGAGTTTCTTAATTTATTT--CCCCATGTG--------------------ATGGGTTTC-----AGGGATGCCTGCAGATCTCACCTTTCTCTCTTACACTCATCACTGTCGTa-----gt-----gtttctcaaac-tcagcactattttgggccaaata-----ttttgttttgttttggaggggtac---cctgtctatt-----gtaggatgat-----------------tagcagcatacttggcgtc-tatctactaaatgtcagaagtattctccca-ctgtagcaa-caaaaatgttgc----cattctctaatgtcccctaggggtaatatcaccctgga---------tagagaaccactCTACTAAGTCTATGAACTTGATTAATGAGAGTGCCATGGATTCTTGATTTCAGCCCTAGTGACTCAGATTTTACACGTGA-CTTTCACAATATTATCTATATAATTTGCTATATATTA--ACTATATAAC-----------------TCCCTAGAATACACTGGCTTATAAGCAATAAATCAAATGCATT--TGG---------------------ATTTAGCGTTGAGCATTTTATAACCCTCAAGAAAAGCTGAGCCTTTGTTTTTGTAAGAATTCGGCTATGCCAGAACCAATGAGACCATATCTCCCCAACATAAAACGCATCTTGCAAG-TTATGACCCCCT------ATATTCAAATGGTAGCCTAGGACTGGA-------------------------GCAAAGAGCCA------------------------------------------------------------------------------------------ACAGCTATCAGTTCTTAATT---------------------------------TTACTCTTGATTGCTTCT-TATTTTTCTTTATT---------GGGTTGAACTGATCAGACTTTGCACATATTAGCCTATGTGACCTAATTCTTTTCCTCCTATGTTTTCTG-TTTCAAGGCTCTTGATCACTGTC-ATTTTCATTGGCCC------C--ACTCCTGT-----ATAATAGTTCCTTCTTTAATATACTTCTCACT-CCGACTTCTGTTTTATATTTGAAATCTGTGATTGTCAC-TTTTCTCTTTCATCTTTTAA-TGCATCACCAGCTTAGACCTATGGTACCCAGTTGGCCTCAATTCACTAGT---GTCA-----TCCTGGCATCTTTTTGACTTCTCTGTTCTGAATCTGTTCATTTCATGTCATGACAGA-ACACTTAGAACACGAAAAAGTAAGGGAAAGCAATTTAACAAAGGGGCAAAAATAAAA-----------AACCATA------CATTCTCAGAAATAAGCATGCAAACTTTATAACTTCTGAGAACACCACATTATCACATGACAGTGTACCAAGTGTCATTTGCAGTAATGATTTTGAGCCTTCAATAAAGG-AGTATgtgtgctctccttaagaag-----aaaaaa-atacaa-tatttagaaatagtttcaactcatctggttaacatagaagttgcaacacctgaagtgataagcttgaattttctgcaaaacacact------------tatgtTACCTAAA-----TATTTATTAGCCAATTTGTATTTATGCTTATTATGTTGAATTGTATATGATTGCTAGTT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16842359 1813 + 184069350 AGTCTTTAGTTTCTGAGAAGAGGC-AGAAACTGCTAGTTTCTTGAAACCCTATAATGAAGAG---TTATTGGGTAAAGTTAGAAAG----CTTAATCATAAGATGGTCTGATGCACATGTTTACCCCCAACAAGTGAGTCAGTTTAGATCACAGTTTCTGCCTTCCAGCCTGATTATTAACCTATTT--GTTTTCTCACCTCCAAAGCTGGTTGTGACTCATC----CCATGTTAAAATGGCCTTGTTGAAGGGAACAAATGGCTGTGACCTGATAT---------TAATGTCACTTTGATCCT--------------ATAGCCATTCCTCCTTTTGGGGTGACTGACTATTAAGAACTCAAGTGTAG-GTAAATTTAGAAATAC------AGAAGCCACTTCTCTCCATACCCCGGTAGACGGAGAAAAGCAAGTTCTCATGCTGGGCCAGTGTGCCCACTGTCCTTCCAAAAGTCAAACTACCACATTGGAGCTTCTTAATTTATTT--CCCCATCTG--------------------ACGGGTTTC-----AGGGATGCTTGCAAATCTCACCTTTCTCTCTTACATGCATCGTTGTCGTa-----gt-----gtttctcaaac-tcagcactattttgggccaaata-----ttttgggctgttttggaggggtac---cctgtgtatt-----gtaggatgat-----------------tagcagcatccttggtctcttatctactaaatgtcagaagtattctccta-ctgtagcaa-caaaaatgttgccggacattctctaatgtcccctaggggtaatatcaccctgga---------tagagaaccactCTACTAAGTCTATGAACTTGATTAATGAGAGTGCCATGGATTCTTGATTTCAGCCCTAGTGACTCAGATTTTACACGTGA-TTT---------------CATGATTTGCTATATATTA--ACTATATCAC-----------------TCCCTAGAATACATTGGCTTATAAGCAATAAATCAAATGCACT--TGG---------------------ATTTAGCATTGAGCATTTTATACCCCTCAAGAAAAGCTGAGCCTTTGTTTTTGTAAGAATTTGGCTCTGCCAGAACCAATGAGACCATACCTCCCCAATATAAAACCCATCTTGCAAG-TTATGACCACCT------TTGTTCAACTGGTAGCCTAGGACTGGA-------------------------GCAAAGAGCCA------------------------------------------------------------------------------------------ATAGCTATCAGTTCTTAATT---------------------------------TTACTCTTGATTGCTTCT-TGTGTTTCTTTATT---------GGGGTGAACTGATTAGACTTTGCACATATTAGCCTATGTAACCTGATTCTTTTCTTCCTGTGTTTTATG-TTTCAAGGCTCTTGATCACTGTC-ATTTTCAATGGCCC------C--ATTCCTGC-----GTAATAGTTCCTTCTTTAATATACTTCTCACTCCCGACTTCTGTTTTATATTCCAAATCTGTGATCATCAC-TTTTCTCTTTCATCTTTTAA-TGCATCACCAGCTTAGACCTATGGTACCCAGTTGGCCTCAATTCACTAGT---GTCA-----TCCT-ACATCTTTTTGATTCCTCTGTTCAGAACCTGTTCGTTTCATGTCATGACAGA-ACACTTAGAACATGAAAAAGTAAGGGAAGGCAATTTAACAAAGGGGCAAAAATAGAA-----------ACCCATA------CATTCTTAGAAATAAGCATGTAAACTTCACAACTTCTGAGGACACCACATTATCCCACGACAGTGTGCCAAGTGTCATTGGCAGTAATGATTTTGAGCCTTCAATAAAGG-AGTATGTGtg-----cttaagaag-----aaaaaacgtacta-tatttagaaatagtttcatctcatctggttaatatagaagttgcaacacctgaagtgataagctcaaattttctgcaaaacacacttatgtaaaacactatattaccTAAACAGAGTATTTGTTAGCCAATTTGTATTTATGCTTATTATGTTGAATTGTATATGATTGCTAGTT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20892151 1813 + 189454096 AGTCTTTAGTTTCTGAGAAGAGGC-AGAAACTGCTAGTTTCTTGAAACCCTATAATGAAGAG---TTATTGGGTAAAGTTAGAAAG----CTTAATCATAAGATGGTCTGATGCACATGTTTACCCCCAACAAGTGAGTCAGTTTAGATCACAGTTTCTGCCTTCCAGCCTGATTATTAACCTATTT--GTTTTCTCACCTCCAAAGCTGGTTGTGACTCATC----CCATGTTAAAATGGCCTTGTTGAAGGGAACAAATGGCTGTGACCTGATAT---------TAATGTCACTTTGATCCT--------------ATAGCCATTCCTCCTTTTGGGGTGACTGACTATTAAGAACTCAAGTGTAG-GTAAATTTAGAAATAC------AGAAGCCACTTCTCTCCCTACCCCGGTAGACGGAGAAAAGCAAGTTCTCATGCTGGGCCAGTGTGCCCACTGTCCTTCCAAAGGTCAAACTACCACATTGGAGCTTCTTAATTTATTT--CCCCATCTG--------------------ACGGGTTTC-----AGGGATGCTTGCAAATCTCACCGTTCTCTCTTACATGCATCGTTGTCGTa-----gt-----gtttctcaaac-tcagcactattttgggccaaata-----ttttgggctgttttggaggggtac---cctgtgtatt-----gtaggatgat-----------------tagcagcatccttggtctcttatctactaaatgtcagaagtattctccca-ctgtagcaa-caaaaatgttgccggacattctctaatgtcccctaggggtaatatcaccctgga---------tagagaaccactCTACTAAGTCTATGAACTTGATTAATGAGAGTGCCATGGATTCTTGATTTCAGCCCTAGTGACTCAGATTTTACACGTGA-TTT---------------CATAATTTGCTATATTTTA--ACTATATCAC-----------------TCCCTAGAATACATTGGCTTATAAGCAATAAATCAAATGCACT--TGG---------------------ATTTAGCATTGAGCATTTTATACCCCTCAAGAAAAGCTGAGCCTTTGTTTTTGTAAGAATTTGGCTCTGCCAGAACCAATGAGACCATACCTCCCCAATATAAAACCCATCTTGCAAG-TTATGACCACCT------TTGTTCAACTGGTAGCCTAGGACTGGA-------------------------GCAAAGAGCCA------------------------------------------------------------------------------------------ATAGCTATCAGTTCTTAATT---------------------------------TTACTCTTGATTGCTTCT-TGTGTTTCTTTATT---------GGGGTGAACTGATTAGACTTTGCACATATTAGCCTATGTAACCTGATTCTTTTCTTCCTGTGTTTTATG-TTTCAAGGCTCTTGATCACTGTC-ATTTTCAATGGCCC------C--ATTCCTGC-----GTAATAGTTCCTTCTTTAATATACTTCTCACTCCCGACTTCTGTTTTATATTCCAAATCTGTGATCATCAC-TTTTCTCTTTCATCTTTTAA-TGCATCACCAGCTTAGACCTATGGTACCCAGTTGGCCTCAATTCACTAGT---GTCA-----TCCT-ACATCTTTTTGATTCCTCTGTTCAGAACCTGTTCGTTTCATGTCATGACAGA-ACACTTAGAACATGAAAAAGTAAGGGAAGGCAATTTAACAAAGGGGCAAAAATAGAA-----------ACCCATA------CATTCTTAGAAATAAGCATGTAAacttcacaacttctgaggacaccacattatcccacgacagtgtgccaagtgtcattggcagtaatgattttgagccttcaataaagg-agtatgtgtg-----cttaagaag-----aaaaaacgtacta-tatttagaaatagtttcatctcatctggttaatatagaagttgcaacacctgaagtgataagctcaaattttctgcaaaacacacttatgtaaaacactatattaccTAAACAGAGTATTTGTTAGCCAATTTGTATTTATGCTTATTATGTTGAATTGTATATGATTGCTAGTT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16482824 1812 + 178775436 AGTCTTTAGTTTCTGAGAAGAGGC-AGAAACTGCTAGTTTCTTGAAACCCTATAATGAAGAC---TTATTGGGTAAAGTTAGAAAG----CTTAATTATAAGATGGTCTGATGCACATGTTTA-CCCCAACAAGTAAGTCAGTTTAGATCACAGTTTCTGCCTTCCAGCCTGATTGTTAACCTATTT--GTTTTCTCACCTCCAAAGCTGGACGTGACTCATC----CCATGTTAAAATGGCCTTGTTGAAGGGAACAAATGGCTGTGACTTGATAT---------TAATGTCACTTTGATCCT--------------ATAGCCATTCCTCCTTTTGGGGTGACTGACTATTAAGAACTCAAGTGTAG-GTAAATTTAGAAATAC------AGAAGCCACTTCTCTCCATACCCAGGTAGATGGAGAAAAGCAAGTTCTCATGCTGGGCCAGTGTGCCCACTGTCCTTCCAAAAGTCAAACTACCACATTGGAGTTTCTTAATTTATTT--CCCCATCTG--------------------ACGGGTTTC-----AGGGATGCTTGCAAATCTCACCTTTCTCTCTTACATGCATCGTTGTCGTA-----GT-----GTTTCTCAAAC-TCACCACTATTTTGGGCCAAATA-----TTTTGGGCTGTTTTGGAGGGGTAC---CCTGTGTATT-----GTAGGATGAt-----------------tagcagcatccttggtctCTTATCTACTAAATGTCAGAAGTATTCTCCCA-CTGTAGCAA-CAAAAATGTTGCCGGACATTCTCTAATGTCCCCTAGGGGTAATATCACCCTGGA---------TAGAGAACCACTCTACTAAGTCTACGAACTTGATTAATGAGAGTGCCATGGATTCTTGATTTCAGTCCTAGTGACTCAGATTTTACACGTGA-TTT---------------CATAATTTGCTATATATTA--ACTATATCAC-----------------TCCCTAGAATACATTGGCTTATAAGCAATAAATCAAATGTACT--TGG---------------------ATTTAGCATTGAGCATTTTATAGCCCTCAAGAAAAGCTGAGCCTTTGTTTTTGTAAGAATTTGGCTATGCCAGAACCAATGAGACCATACCTCCCCAATATAAAACCCATCTTGCAAG-TTATGACCACCT------TTGTTCAACTGGTAGCCTAGGACTGGA-------------------------GCAAAGAGCCA------------------------------------------------------------------------------------------ACAGCTATCAGTTCTTAATT---------------------------------TTACTCTTGATTGCTTCT-TGTGTTTCTTTATT---------GGGGTGAACTGATTAGACTTTGCACATATTAGCCTATGTAACCTGattcttttcttcctgtgttttATG-TTTCAAGGCTCTTGATCACTGTC-ATTTTCAATGGCCC------C--ATTCCTGC-----GTAATAGTTCCTTCTTTAATATACTTCTCACTCCCGACTTCTGTTTTATATTCCAAATCTGTGATCATcac-ttttctctttcatcttttaa-TGCATCACCAGCTTAGACCTATGGTACCCAGTTGGCCTCAATTCACTAGT---GTCA-----TCCT-ACATCTTTTTGATTCCTCTGTTCAGAACCTGTTCGTTTCATGTCATGACAGA-ACACTTAGAACATGAAAAAGTAAGGGAAGGCAATTTAACAAAGGGGCAAAAATAGAA-----------ACCCATA------CATTCTCAGAAATAAGCATGTAAACTTCACAACTTCTGAGGACACCACATTATCCCACGACAGTGTGCCAAGTGTCATTGGCAGTAATGATTTTGAGCCTTCAATAAAGG-AGTATGTGtg-----cttaagaag-----aaaaaatgtactA-TATTTAGAAATAGTTTCATCTCATCTGGTTAATATAGAAGTTGCAACAGCTGAAGTGATAAGCTCAAATTTTCTGCAAAACACACTTATGTAAAACACTATATTACCTAAACAGAGTATTTGTTAGCCAATTTGTATTTATGCTTATTATGTTGAATTGTATATGATTGCTagtt i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19965543 1829 - 48547382 AGTCTTTAGTTTCTGAGAAGAGGC-AGAAACTGCTAGTTTCTTGAAACCCTATAATGAAGAG---TTATTGGGTAAAGTTAGAAAG----CTTAATCATAAGATGGTCTGATGCACATGTTTA-CCCCAACAAATGAGTCAGTTTAGATCACAGTTTCTGCCTTCCAGCCTGATTATTAACCTATTT--GTTTTCTCACCTCCAAAGCTGGTCGTGACTCATC----CCATGTTAAAATGGCCTTGTTGAAGGGAACAAATGGCTGTGACCTGATAT---------TAATGTCACTTTGATCCT--------------ATAGCCATTCCTCCTTTTGGGGTGACTGACTATTAAGAACTCAAGTGTAG-GTAAATTTAGAAATAC------AGAAGCCACTTCTCTCCATACCCAGGTAGATGGAGAAAAGCAAGTTCTCATGCTGGGCCAGTGTGCCCACTGTCCTTCCAAAGGTCAAACTACCACATTGGAATTTCTTAATTTATTT--CCCCATCTG--------------------ACGGGTTTC-----AGGGATGCTTGCAAATCTCACCTTTCTCTCTTACATGCATTGTTGTCGTa-----gt-----gtttctcaaacttcagcactattttgggccaaata-----ttttgggctgttttggaggggtac---cctgtgtatt-----gtaggatgat-----------------tagcagcatccttggtctcttatctactaaatgtcagaagtattctccca-ctgtagcaa-caaaaatgttgccagacaatctctaatgtcccctaggggtaatatcaccctgga---------tagagaaccactCTACTAAGTCTATGAACTTGATTAATGAGAGTGCCATGGATTCTTGATTTCAGCCCTAGTGACTCAGATTTTACACGTGA-TTTTCACAATATTAACTACATAATTTGCTATATATTA--ACTATATCAC-----------------TCCCTAGAATACATTGGCTTATAAGCAATAAATCAAATGCACT--TGG---------------------ATTTAGCATTGAGCATTTTATATCCCTCAAGAAAAGCTGAGCTTTTGTTTTTGTAAGAATTCGGCTATGCCAGAACCAATGAGACCATACCTCCCCAATATAAAACCCATCTTGCAAG-TTATGACCACCT------TTGTTCAACTGGTAGCCTAGGACTGGA-------------------------GCAAAGAGCCA------------------------------------------------------------------------------------------ACAGCTATCAGTTCTTAATT---------------------------------TTACTCTTGATTGCTTCT-TGTGTTTCTTTATT---------GGGGTGAACTGATTAGACTTTGCACATATTAGCCTATGTAACCTGATTCTTTTCTTCCTATGTTTTCCG-TTTCAAGGCTCTTGATCACTGTC-ATTTTCATTGGCTC------C--ATTCCTGC-----GCAATAGTTCCTTCTTTAATATACTTCTCACTCCCGACTTCTGTTTTATATTCCAAATCTGTGATCATCAC-TTTTCGCTTTCATCTTTTAA-TGCATCACCAGCTTAGACCTATGGTACCCAGTTGGCCTCAATTCACTAGT---GTCA-----TCCT-ACATCTTTTTGATTCCTCTGTTCTGAACCTGTTCATTTCATGTCATGACAGA-ACACTTAGAACATGAAAAAGTAAGGGAAGGCAATTTAACAAAGGGGCAAAAATAGAA-----------ACCCATA------CATTCTTAGAAATAAGCATGTAAacttcacaacttctgaggacaccacattatcccacgacagtgtgccaagtgtcattggcagtaatgattttcagccttcaataaagg-agtatgtgtg-----cttaagaaga----aaaaaacgtacta-tatttagaaatagtttcatctcatctggttaatatagaagttgcaacacctgaagtgataagctcaaattttctgcaaaacacacttatgtaaaacactatattaccTAAACAGAGTATTTGTTAGCCAATTTGTATTTATGCTTATTATGTTGAATTGTATATGATTGCTAGTT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21326729 1821 - 190850796 AGTTTTTACTTTCTGAGAGGAGGC-AACAACTTTTACTTCCTTGAAACCCTATAATGAGGAG---TTACTGGGTAAAGCTAGAAA--------AGTTATAAGAGAGTCTGATGGACATGTTTACCC----CAAGTGAGTCAGTTTAAATCACATCTACTGCCTTCCACTCTGATTATTAACCCATTT--GTTTCCTCACCTCCAAAGCTGGTCGTGACTCATC----CCATGCTAAACTGGCCTCATGGAAGGGAGCAAAGGGCTGTGACCTGATAT---------TAATGTCACTTAGTTCCT--------------ATAGCCATTCCTCCTTTTGGGGTGACTGACTGTTCAGAACTCAAGTGTAG-GTAAATCTAGAAATACCTTGTAAGAAGCCACTTCTCTCCATACCCAGGTAGATGGAGTGAAGCAAGTTCTTATTCTGGGCTGGTATGCCCACTGTCCTTTCAAAGGTGAAACTACCACACTGGAATTTCTTAATTTATTT--CCCCAGCTG--------------------ACACGTTTC-----AGGGATGCTTGCAAATCTCACCTTTCTCTCTTATACACATTGTTTTCATAGGCCCGT-----gtttctcaaac-tcagcaccattttgggccaaatattttgttttgttttgttttggagggtttc---cctgtgtatg-----gtaggatgtt-----------------tatcagcatccttgtcctc-tgtctactgaatgtcagaagtattctccca-ttgtagcag-c--caatgttaccagacattctctaacgtcccctaggggaaatatcaccctgga---------taaagaaccactCTCCTAAGTCTATGAACTTGATTAATGAGAGTGCCATGGATTCTTGATTTCAGCCCTAGTGACTCAGAGTTTATAAGTGA-TTT-TACAATATTAACTATATAAATTGCTAAATATTT--ACAATATAAC-----------------TCCCTAGAATACACTGGCTTATAAGCACTAAATCAAACGCACTGATGGACATGTTTACCCCACCACGTAATTTAGTGTTGAGCATTTTATAACCCTCAAGAAAAGCTGAGCC----TTTTTGTAAGAATTTGGCTATGTTGGAACCAATGAGCCCTTACCTTCCCAATATAAAACCCATCTTGCAAC-TTAAGACCACAT------CTACTCAACTGGTAGCCTAGGACTGGA-------------------------GC--AGAGCCA------------------------------------------------------------------------------------------ACAGCTATTAGTTCTTAATT---------------------------------TTACTCTTGATTGCTTCT-TATTTTTCTTTATT---------GGGTTGAACTGATTAGACTTTGCATATATTAGCCTATGTAACCTGATTCTTTTCTTCCCATGTTTTCTGACTTCAGGGCTCTTGATCACTCTC-ATTTTCATTGGCCC------C--ATTCCTAC-----TTAACAGTTCCTTCTTTAATATAATTTTCACT-CCGACTTCTGTTTTATATTCCAAATCTATGATCATCACTTTTTCTCCTTCACCTTTTAA-TGCA---------TAAACCTACGGTACCCAGTTGGTCTCAATTCACTAGT---GTCG-----TCCTGGCATCTTTTTGACTCCTCTGTTCTGAA----------TCATGTCATGACAGA-ATAATTAGAACATGAAGAGGTAAGAGAAGGCAACTTAACAGAAGGGCAAAAATAGAA-----------AACC------------------AAACAAGCATGCGAACT--ATAACTTCTGAGAACACCACACTATCACACAACAGTATACCAAGTGCCATTTGCTGTAATGATTTTGACCCTTCAATAAAGG-AACATGTATGCCTTCCGTAAGAAG-----AAAAAAAATGCTA-CATTTAGAAATAGTTTCATCGCATCTGGTTAATATAAAAGTTGTAACACCTGAAGTGATAGGCTTGAATTTTCTGCAAAATACACTTACGTAAAACAC--TGTTATCTAAACAGAGTATTTGTTAGCCAATTTGTATTTACACTTATTATGTTGAATTGTGTATGATTGCTAGTT i calJac3.chr3 C 0 C 0 s mm10.chr5 49301176 1883 + 151834684 tgttttgttttTTTATTAAAAGGTAAGAAACTTTAAGGCTATAAAGACCC---AACAAATAC---ATAGTACATAAAATTAGGGAGATTAATTAATTATAAAAGCTTCAAATGGATAT-TTTA-TTACAATAAAGAAATAAACTGAGCTCTTGTGTTCTGAATACAATCTCG----CTAAACCATTC--AATT--TTAACTCCAATGCTGGTCCTGACTCATTTCTGCCATGCTAAAATGACGTTGTTAATGAAAGCCTGGGATTATGACCAGATAT---------T-------CTTTTCTCCC--------------G----------------------GGATGGCTATTAA------AAGTACAGCATGGCTCCCTGAATACCTTCTAAGAGATAACTTTGAACTAAACCTTAGTAGAGGCAGTGAAGCAAAGTTCTTTGTCGTGTTAATTTGTCTACTGCCCTTGTTGAGGGTAAACCATCACACCACAGTACCCTAGATTATGTACCTCTATCTG--------------------A------TC-----A-----------AAATATTAGTTTCCTCTCATGTATTTATATCTGCCCCA-----GGCTAAAGTAGCTCAACA-GAAGCACTAATTTGGGTCTAATG-----ATATG-------TTTAGGGGGTACTTTCCTGAGAGTCAGAAAGTAAGAAAGTCACTAAAGTCAAAGGTATAGCAAGGTCCCTGGCCTC-TGTCTACTGAGTTTCA-AAATATAAATCTG-TTGCAGT---CAAACATGTTGT-AGGCATT--------TTTCCCTGGACAAATATTTCATCCAG---------TAGAAAAGCA-----------ACACAAACTTGAAGGATGAACGTACTGTGGAAT---GTTTTGAGCCTCGCTGGCTTAGCTTTGATGCATAG-TTTTGCCAATATTGACAGTATAATTAG-TATATGTTATCCCCATATAGCAGAATTAACATTCCACATCCCTAGAATTTGTGGAGTCATAAA-Gttaaattaaatatata--aag---------------------atttaaaataaaaaaatGTGTGACCAGTAAGAATATCTGAGCCATATCTTAGGTAATAATTGGGTTATGTCAAGACCTAGAATACTATA-CTTCCCAATATAAACCTTACCTTAAAAA-TCATAGCTACCGaggagaatgctaggatactgaggcaggagtgggtggatgggtgggtggaggaggacccacagagaggcaggggacaaatgttcgtggagatgaaactgaaaggggataacatttgaaatataaataaataaaataaccaataaaaaTGAAAAAAATATCATAGCTACCTATACTTAATGACAAACCCAACTATGACACAGAGCGTCGAGAGATGATTATTCATCATTTCA-CATGTCTGTTTATTTTATTTATATGATTGAACACTTTAGAACATTTTTATGTTAGCCCATGT-ACTGAGAGTTTTGACTCTTGTATTTTTTA-CTGTCAAACT-TTGATCTCTG------CTCACTGAACCCTGTTAC--TTTCCTAC------TAAGAG--CCTTTAACTATCTGAGTCCTACC-ACAAGTTATGGCTCCTATTCCCTACCAATGACTCTAGA-TTTTCTCTTTCAGAAGTTAAGTGCT------GCTGACACATAGGACAACTCTGTGTATACAATTCAC---T---GCCAGAGAGTCTTGGCATATCCTTGATTCTTCTCTTCTGAATCAAATGGTATTGTAATATGAAAGACTTTCTGGGAATATAAA---------GAAGGCATGTCCACAATTAGTTAAAAAATGAA-----------AAAAAGAGGTAAGCATTCT--GAGATATGCA--CCAAGTTCACAGCTTCTTAGAGTATAA-------------------------------TGGCAG--------TTGATCCATGAAT-------GTATGGGT------CTTAAAAAG-----AAGGTA---ATTA-AGAATAGGAATTGTTTCA-CTGCTCTATATAATACATAA-TTCTAGTACCTAAAGAGATGAGCTGAAATTATCTAGAAAATAT--TTAGAAAACATGCTTTATGAATAAAA-----TATTCATCAGTCCATTTGTATTGACACTTG----GTTAAATCATACAGAACTACTATTT i mm10.chr5 C 0 I 47 s canFam3.chr3 3891451 1850 - 91889043 AGTCTTGAGTTTCTGATAAGGGCC-AGAAACTTCTGGTTCTTTGAAATCCTATAATGAGGAGTCATTATTAGATAAAGTTAGGGAG----CTTAATTATAAGATGGTCTGATGGATACATTTA-CCCCAATAAGTGAGTCACTTGGGATCACATCATCTGGCTCCCAGTCTGA---TTAACCCATTCAAATTTCCTCACCCTTAGTGCTGGTCCTAATGCATTTCTGTCATCCTAATATGGCTTCATTGATAGGAGCAAAGGGT----ACCTGACATCCTTCCTTATGGGGTGATTTTGTTGATGGGAGCAAAGGGTGACTGGCATCCCTTCTTTTTGTGGGACTGACAATTAAGAGCTC-AGAGTAA-GTACATTTAGAAATATCCTCTAGGAAGCTCCTTCTCTCCAAACC-AGGTAAACGTGGTGAAGCAAGTTCTTAGGCTGGGTCAGTGTGCCTACTGTCCTTCCAGAAGTCAAACCACCATGCTGGGGGTACTTGGCCTATTT--CCCCGTGTACCTACAAATCATTAAGTTTCACAGACTTCCTTCAAAGAATGTGTGCAGATC-CACCTTCCTTTCTTATGCTCACAGTTTTCTTAAGCcagt-----gtttctcaacc-tagacactgttctgggccagata-----gcttc-tttgttgttgggggctgc---cctgtatact-----gtaggatgct-----------------tagcaacattcctggcctc-tatctactaaactctggaagtactccccaagttgtgacaaccacagatgtcttcagatattttctaatgtctcagaaagggaacaccaccctcCACCCACCCACCCAAGAGCCACTATTTAAAGACCGTGAATTCCATTAATGAGATCTCTGTGGATTCTTGCTTAGAGCCCTACTGACTTGGATATTACATGTGA-TTTTGACAATATTAATTACATAATTTGCCATATATTA--ATTATATACC-----------------TCCCCA-AATCCAATGAATTGTGAGCAGTAAATTAAATGCACT--GAG----------------------------------TATTTTAGGACACCCGAGAAAAGTTGAGCCTTTGTCTTTGCAAGAATTAGGCTATGCCAAAACCACTGGGGCTCTCTCTTCCCAATGGAATACCC-CCTTGCAAGCTTATGGCCACTT------ACACTCAATCAGAAGCCTAAGATTGGG-------------------------ATGAAAAGGCA------------------------------------------------------------------------------------------ACTGTTGGCAGTCTCAAATT---------------------------------TTACTCTTGCTAGCTAGTCTATTCTTCTTAACT---------GGGTTGAACTGATTGTAATTTGCACACATTAACTCAT-TAACCTGATTCTTTACTTCCTTGGATTTCTGACATCAAGACCCTTAATCGCTGTTGAGTGACACGAGCCC------CCTATTCCTATTCCAGTTTATAATT--TTCTTTAATACAGTTTTCCCT-CCAAGTTCTGCTTTATATTCTGCATCTGTGATGATGAA-TTTGTTTCTTTGTTTTATAC---CATCAGCATTTC-----------------CTGGGCTCAATTCACTAGTCTCCTCA-----TCCTGACATCTTCT-------TTTGTCCTGAATGTGTTCATATTGTTGCATAATAGAGACATTCAGAACATAAAG----AAGAGATAGCAAATTACTGGGGGGACAAAAAAAAAACTATAAAAGACAAGCAAA------CATCCTCAGAAATGCCCCTGCAGAATTCATAACTTTTGAGAATATCACACAAC----------TGTACCA---------------AATGACTCTAAGCCTTCGATAAAGGAAAAATGTATACTTTACTCGAGAAGAGGGGAAAATAGGAACAATTACTTAGAA----TTCCATTTCATCTTTTTCTTAGGGAACTTATAAAACTTGAAGGGATAAGCTCTGGTTATGTGAAAAATATACTTATTTAAAATACCACCTTACTCAAA-----TATTTATTATCCTATTTGTATTTATACCTATTAGGTTGGGTCATATAAAACTGCTATTT i canFam3.chr3 I 15 C 0 a score=216505.000000 s hg38.chr4_KI270790v1_alt 204206 80 + 220246 -TTACAAATATTATAAAATTTGGTAAACATTTTATGAATATTAACAATTATGTATTCAACCAAAATAATACTGAAAG---GTTT s panTro4.chr4 21593185 80 + 193495092 -TTACAAATATTATAAAATTTGGTAAACATTTTATGAATATTAACAATTATGTATTCAACCAAAATAATACTGAAAG---GTTT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21768617 80 + 198332218 -TTACAAATATTATAAAACTTGGTAAACATTTTATGAATATTAACAATTATGTATTCAACCAAAATAATACTGAAAG---GTTT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20377653 80 - 85365473 -TTACAAATATTATAAAATTTGTTAAACATTTTATGAATATTAACAATTATGTATTCAACCAAAATAATACTGAAAG---GTTT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16844172 78 + 184069350 -TTACAAATATTATAAAACTTGGTAAATATTTCACAAATATTAACAATTATATATTCCACCAAAATAATACTGAAAG---AT-- i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20893964 78 + 189454096 -TTACAAATATTATAAAACTTGGTAAATATTTCACAAATATTAACAATTATATATTCCACCAAAATAATACTGAAAG---AT-- i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16484636 78 + 178775436 -ttacaaatattataaaacttcgtaaatatttcacaaatattaacaATTATATATTCCACCAAAATAatactgaaag---at-- i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19967372 81 - 48547382 -TTACAAATATTATAAAACTTGGTAAATATTTCACAAATATTAACAATTATATATTCCACCAAAATAATACTGAAAGttttt-- i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21328550 80 - 190850796 -TTACAAGTATTATGAAATTTAATAAATATTCTACAAATATTAACAATTATGCATTCAACCCAAATAATACTGAAAA---AAAT i calJac3.chr3 C 0 C 0 s canFam3.chr3 3893301 55 - 91889043 TTTACA--------------------------CCCAAACACTGACAATTACATATTCAATTCTAGCAACAGTAAGAA---GTTC i canFam3.chr3 C 0 C 0 e mm10.chr5 49303059 47 + 151834684 I a score=291832.000000 s hg38.chr4_KI270790v1_alt 204286 121 + 220246 TTTTTGttttttgtttttttttcaagttccaggatacatgtgcaggacgtggaattttgttacttaggtaaataaatgtatgccaggccataccaccctgaacatgccggatcttgtctga s panTro4.chr4 21593265 121 + 193495092 TTTTTGttttttgtttttttttcaagttccaggatacatgtgcaggacgcggaattttgttacttaggtaaataaatgtatgccaggccataccaccctgaacatgcctgatcttgtctga i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21768697 117 + 198332218 TCTGtttgtttgtttgttttttcaagttccaggatacatgtgcaggacatggaattttgttacttagg----taaatgtatgccaggccataccaccctgaacatgcccgatcttgtctga i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20377733 116 - 85365473 TTCTTGtttttt-tttttttttcaagttccaggatacatgtgcgggacgtggaattttgttacttagg----taaatgtatgccaggccataccaccctcaacatgcccgatcttgtctga i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16844250 104 + 184069350 -------------ttttttttttaagttccaggatacatgtgcaggacgggaaagtttgttacatagg----taaacatgtgccaggccataccaccctgaacatgcccgatcttgtctga i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20894042 104 + 189454096 -------------ttttttttttaagttccaggatacatgtgcaggacgtgaaagtttgttacatagg----taaacatgtgccaggccataccaccctgaacatgcccgatcttgtctga i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16484714 104 + 178775436 -------------ttttttttttaagttccaggatacatgtgcaggacgtgaaagtttgttacatagg----taaacgtgtgccaggccataccaccctgaacatgcCCGATCTTGTCTGA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19967453 104 - 48547382 -------------ttttttttttaagttccaggatacacgtgcaggacatgaaagtttgttacatagg----taaacgtgtgccaggccataccaccctgaacatgcccgatcttgtctga i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21328630 106 - 190850796 TT-----------ttttaattttaagttctgggacacatgtgcaggacatgcaagtttgttacgtagg----taaacgtgttccaggccataccaacgtgaacatgcccgatctcatctgG i calJac3.chr3 C 0 C 0 e mm10.chr5 49303059 47 + 151834684 I e canFam3.chr3 3893356 0 - 91889043 C a score=25704.000000 s hg38.chr4_KI270790v1_alt 204407 7 + 220246 AACTTCT s panTro4.chr4 21593386 7 + 193495092 AACGTCT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21768814 7 + 198332218 AACTTCT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20377849 7 - 85365473 AACTTCT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16844354 7 + 184069350 AACTTCT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20894146 7 + 189454096 AACTTCT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16484818 7 + 178775436 AACTTCT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19967557 7 - 48547382 AACTTCT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21328736 7 - 190850796 AACTTCT i calJac3.chr3 C 0 C 0 s mm10.chr5 49303106 7 + 151834684 AAATTCT i mm10.chr5 I 47 C 0 e canFam3.chr3 3893356 0 - 91889043 C a score=902531.000000 s hg38.chr4_KI270790v1_alt 204414 270 + 220246 CTAAATGCAAGA---CAA--------TACAAACTAGCAATGCCTTCTTCAAAAGCCAAACACACTTAAAGTTTTATGAAAATAATT----TTCATTTTGCTAATGTT-----TCATCAATGCTTCCTTCTTGCGTGGATAGCTTCATGATTCCAGAAACTCAAGAACATTAA--CTGAACAAT---CAACTAAAACAGTGCAAGTAATGACTCCACAAGACAGCGCAAGTAATGACTCTATAGCCAA---TGGA-TAAATAAGAAAATGAGGTGATTATTTTAATTAGCAAATCTATTT s panTro4.chr4 21593393 270 + 193495092 CTAAATGCAAGA---CAA--------TACAAACTAGCAATGCCTTCTTCAAAAGCCAAACACACTTAAAGTTTTATGAAAATAACT----TTCATTTTGCTAATGTT-----TCATCAATGCTTCCTTCTTGCGTGGATAGCTTCATGATTCCAGAAACTCAAGAACATTAA--CTGAACAAT---CAACTAAAACAGTGCAAGTAATGACTCCACAAGACAGCGCAAGTAATGACTCTATAGCCAA---TGGA-TAAATAAGAAAATGAGGTGATTATTTTAATTAGCAAATCTATTT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21768821 270 + 198332218 CTAAATGCAAGA---CAG--------TACAAACTAGCAATGCCTTCTTCAAAAGCCAAATACACTTAAAGTTTTATGAAAATAATC----TTCATTTTGCTAATGTT-----TCATCAATGCTTCCTTCTTGCGTGGATAGCTTCATGATTCCAGAAACTCAAGAACATTAA--CTGAACAAT---AAACTAAGACAGTGCAAGTAATAACTCCACAAGACACTGCAAGTAATGACTCTATAGCCAA---TGGA-TAAATAAGAGAATGATGTGATTATTTTAATTAGCAAATCTATTT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20377856 270 - 85365473 CTAAATGCAAGA---CAA--------TACAAACTAGCAATGCCTTCTTCAAAAGCCAAATACACTTAAAGTTTTATGAAAATAATT----TTCATTTTGCTATTGTT-----TCATCAATGCTTCCTTCTTGCGTGGATAGCTTCATGATTCCAGAAACTCAAGAACATTAA--CTGAACAAT---CAACTAAAACAGTGCAAGTAATGACTCCACAAGACAGTGCAAGTAATGACTCTATAGCCAA---TGGA-TAAATAAGAGAATGAGGTGATTATTTTAATTAGCAAATCTATTT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16844361 271 + 184069350 CTAAATGCAAGA---CAA--------TACAAACTAGCAACCCCTTCTTCAAAAGCCAAGTACACttaaaatattataaaaataatt----ttCATTTTGCTAAGGTT-----TCATCAATGCTTCCTTCTTGCACGGATAACTTCATGATTCCAGAAACTCAGGAACATTAA--CTGAACAAT---CAACTAAAACAGTACAAGTAATGACTCCACAAGACAATGCAAGTAATGACTCTGTAGCCAA---TGGATTAAATAAGAGAATGAGGTGATCATTTTAATTAGCAAATCTATTT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20894153 271 + 189454096 CTAAATGCAAGA---CAA--------TACAAACTAGCAACCCCTTCTTCAAAAGCCAAGTACACTTAAAATATTATAAAAATAATT----TTCATTTTGCTAAGGTT-----TCATCAATGCTTCCTTCTTGCACGGATAACTTCATGATTCCAGAAACTCAGGAACATTAA--CTGAACAAT---CAACTAAAACAGTACAAGTAATGACTCCACAAGACAATGCAAGTAATGACTCTGTAGCCAA---TGGATTAAATAAGAGAATGAGGTGATCATTTTAATTAGCAAATCTATTT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16484825 271 + 178775436 CTAAATGCAAGA---CAA--------TACAAACTAGCAACCCCTTCTTCCAAAGCCAAgtacacttaaaatattataaaaataatt----ttcattttgctaAGGTT-----TCATCAATGCTTCCTTCTTGCACGGATAACTTCATGATTCCAGAAACTCAGGAACATTAA--CTGAACAAT---CAACTAAAACAGTACAAGTAATGACTCCACAAGACAATGCGAGTAATGACTCTGTAGCCAA---TGGATTAAATAAGAGAATGAGGTGATCATTTTAATTAGCAAATCTATTT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19967564 271 - 48547382 CTAAATGCAAGA---CAA--------TACAAACTAGCAACGCCTTCTTCAAAAGCCAAGTACACTTAAAATATTATAAAAATAATT----TTCATTTTGCTAAGGTT-----TCATCAATGCTTCCTTCTTGCACGGATAACTTCATGATTCCAGAAACTCAGGAACATTAA--CTGAACAAT---CAACTAAAACAGTGCAAGTAATGACTCCACAAGACAATGCGAGTAATGACTCTATAGTCAA---TGGATTAAATAAGAGAATGAGGTGATCATTTTAAATAGCAAATCTATTT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21328743 261 - 190850796 TTAAATGCAAGA---CAA--------TACAAACTAGCAATGCCTTATTCAAAAG-TAAGTACACTTAAAATTTCATAAAAATAATT----TTCATTTTGCTAATGTT-----TTATCAATGCTTCTTTCTTGCACAGATAGCTTCATGACTACAGAAACCCAAGAACATTAACTCTGAACAAT---CAACTAAAACAGTGCCAGTAATGATTCCACAAGATAA----------GACTCTATAGTCAA---TGGA-CAAATAAGAGAATGAGGTGATTATTTTTATGAGCAAATCTATTT i calJac3.chr3 C 0 C 0 s mm10.chr5 49303113 240 + 151834684 -TAAATAGAAAAGCTTGA--------TGCTGACTCCCAATCCCCCCTTCCAAAG-AGAGAAAATTTAGAAACTACATAGAATA--T----TTCATTT--CTAGTTTTCAAGCTCATGAA-GTTCTGCTATTATGTGAATAGTCTTATAATCATGGCTACCTAAGAACACGGC--------------------------TATAAGTGGCGAACATGCATGTCAG---GAGGAAT-------CAACCAG---TGAA-TGAATGAGAGAAACAAGTTATGAATTTAATAAGTTTATCTATTT i mm10.chr5 C 0 I 896 s canFam3.chr3 3893356 274 - 91889043 CTAAACACAAGA---AAAACACTTATTACAGACTAGCAGAGTCTCCTTCAAAAG-CAAGCATATTTAAAATTTCATAAAAAGAATTCATGTTTTCTTTACTAACATT-----TGATGAATGCCTTCTTCTTACATGGATAGCCTTATGATCACAGGAACCCAAGAACGTTAACTCTAAATGGTGCACATTTAAAACAGTGTGAGGAATCACTCTAAAAGACAA----------GACCACATCACCAAAACTGGA--CAGTAAGAGAAC----TGATTATTTTAATGAGCAAACCTACTT i canFam3.chr3 C 0 C 0 a score=49676.000000 s hg38.chr4_KI270790v1_alt 204684 14 + 220246 GCAAAGGACCCTTC s panTro4.chr4 21593663 14 + 193495092 GCAAAGGACCCTTC i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21769091 14 + 198332218 GCAAAGGACCCTTC i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20378126 14 - 85365473 GCGAAGGACCCTTC i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16844632 14 + 184069350 GCAAAGGACCGTTC i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20894424 14 + 189454096 GCAAAGGACCGTTC i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16485096 14 + 178775436 GCAAAGGACCCTTC i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19967835 14 - 48547382 GCAAAGGACACTTC i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21329004 14 - 190850796 GTAAAGGACCCTTC i calJac3.chr3 C 0 C 0 s canFam3.chr3 3893630 14 - 91889043 GCAGAGGACCTCTC i canFam3.chr3 C 0 C 0 e mm10.chr5 49303353 896 + 151834684 I a score=3103556.000000 s hg38.chr4_KI270790v1_alt 204698 810 + 220246 ACGGATCCTCA-----AGTTTCTGTTTTGCCATGTTTAGTGCATTTCAATTGCA-AATGTCAACAATTGCA-TTTTTT-GGATTCTAATCTCCAGCAGCATAATAAATAATGTGCACTGCATTTGTCAT-TTTAAGA-TGACAGCACTCAGCGGTAAGAACCTAACAAACAAAACAAGCTAAAGA-ATC--ATTAAGTTTCAGTACGCAAGTGCCACCTTAACAAGTGATCATTGAAGTAATA--TTTTCTGCAATAAAACCCCTACAGTTGCTAATCATTGATGATAGCTGATGCTAGAAACCA-AAAACAGATACACATCTTCAGTACATGAGATGGAATATaagacagaaagtaagtaaggagaaggaaaaggagacagaaagaaaCCTAATTATATCAGACACCCAGGAACTCTGAAATGAACTCGTTTCATCTCAGAGGAACATGAAGAAATATAGAGGAGTCAATTTAAATTTATTATCTGCCTGCTGCTGTTTCAGCTGCTGCTAACAGACGTTGCATAGAGAACCTATGGGGAGAACAGCATTTTTATATGTTCTCCTGGTAAGAAGCTGGGGTGAGGGTGTT-----GAGGATGAATGTAAATGTGAATATATGGTACTTCATCAGGACCAAGTTTTATGTTACCATCTCAAGGGAGCTAAGTAAAATAAAAGTTCAATGAATATTTGCTGAATAAATAAATGATGCAGTGATTCCAAGACTCCCTAGA------AATCCATTGTGTGGTTCAGTAGAGTCTAGTACTGAACCATCACCTCTCATCAGCAGTGGCAAGAAGAAATCTTTGTGTCAGGTAAaagaagaa s panTro4.chr4 21593677 806 + 193495092 ACGGATCCTCA-----AGTTTCTGTTTTGCCATGTTTAGTGCATTTCAATTGCA-AATGTCAACAATTGCA-TTTTTT-GGATTCTAATCTCCAGCAGCATAATAAATAATGTGCACTGCATTTGTCAT-TTTAAGA-TGACAGCACTCAGCGGTAAGAACCTAACAAACAAAACAAGCTAAAGA-ATC--ATTAAGTTTCAGTACGCAAGTGCCACCTTAACAAGTGATCATTGAAGTAATA--TTTTCTGCAATAAAACCCCTATAGTTGCTAATCATTGATGATAGCTGATGCTAGAAACCA-AAAACAGATACACATCTTCAGTACATGAGATGGAATATAAGACAGAAAGTAAGTAAGGAGAAGGAAAAGGAGACAGAAA----CCTAATTATATCAGACACCCAGGAACTCTGAAATGAACTCGTTTCATCTCAGAGGAACATGAAGAAATATAGAGGAATCAGTTTAAATTTATTATCTGCCTGCTGCTGTTTCAGCTGCTGCTAACAGACGTTGCATAGAGAACCTATGGGGAGAAAAGCGTTTTTATATGTTCTCCTGGTAAGAAGCTGGGGTGAGGGTGTT-----GAGGATGAATGTAAATGTGAATATATGGTACTTCATCAGGACCAAGTTTTATGTTACCATCTCAAGGGAGCTAAGTAAAATAAAAGTTCAATGAATATTTGCTGAATAAATAAATGATGCAGTGATTCCAAAACTCCCTAGA------AATCCATTGTGTGGTTCAGTAGAGTCTAGTACTGAACCATGACCTCTCATCAGCAGTGGCAAGAAGAAATCTTTGTGTCAGGTAAAAGAAGAA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21769105 809 + 198332218 ACGGATCCTCA-----AGTTTCTGTTTTGCCATGTTTAGTGCATTTCGATTGCA-AATGTCAACAACTGCA-TTTTTT-GGATTCTAATCTCCAGCAGCATAATAAATAATGTGTACTGCATTTGTCAT-TTAAAGA-TGACAGCACTCAGCAGTAAGAACCTAACAAACTAAACAAGCTAAAGA-ATC--ATTAAGTTTCAGTACGCAAGTGCCACCTTAACAAGCAGTCATTGAAGTAATA--TTTTCTGCAATAAAACCCCTATAGTTGCTAATCATTGATGATAGCTGATGTTAGAAACCA-ATAACAGATACACATCTTCAATACATGAGATGGAATATAAGACAGAAAGTAAGTAAGGAGAAGGAAAAGGAGACAGAAAGAAACCTAATTATATCAGACACCCAGGAACTCTGAAATGAACTTGTTTCATCTCAGAGGAACATAAAGAAATGTAGAGGAGTCAATTTAAATTTATTATCTGCCTGCTGCTGTTTCAGCTGCTGCTGACAGACGTTCCATAGAGAACCTATAGGAAGAAAAGCATTTTTACATGTTCTCCTGGTAAGAAGCTGGGGTGAGGGTGTT-----GAGGATGAATGTAAATGTGAATATATGGTACTTCATCAGGACCAAGTTTTATGTTACCATCTCAAGGGAGCTAAGTAAAGTAAAAGTTCAATGAATATTTGCTGAA-AAATAAATGATGCAGTGATTCCAAAACTCCCTAGA------AATCCATTGTGTGGTTCAGTAGAGTCTAGTATTGAACCATGACCTCTCATCAGCAGTGACAAGAAGAAATCTTTGTGTCAGATAAAAGAAGAA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20378140 810 - 85365473 ACGGATCCTCA-----AGTTTCTGTTTTGCCATGTTTAGTGCATTTCTATTGCA-AATGTCAACAATTGCA-TTTTTT-GGATTCTAATCTCCAGCAGCATAATAAGTAATGTGCACTGCATTTGTCAT-TTTAAGA-TGACAGCACTCAGCGGCAAGAACCTAACAAACAAAACAAGCTGAAGA-ATC--ATTAAGTTTCAGTACGCAACTGCCACCTTAACAAGCGATCATTAAAGTAATA--TTTTCTGCAATGAAACCCCTATAGTTGCTAATCATTGATGATAGCTGATGTTAGAAACCA-ATAACAGATACACATCTTCAATACATGAGATGGAATATaagacagaaagtaagtaaggaaaaggaaaaggagacagaaagaaaCCTAATTATATCACACACCCAGGAACTCTGAAATGAACTCGTTTCATCTCAGAGGAACATAAAGAAATGTAGAGGAGTCAATTTAAATTTATTATCTGCCTGCTGCTGTTTCAGCTGCTGCTAACAGACGTTCCATAGAGAACCTATGGGGAGAAAAGCATTTTTATATGTTCTCCTGGTAAGAAGCTGGGGTGAGGGTGTT-----GAGGATGAATGTAAATGTGAATATATGGTACTTCATCAggaccaagttttatgttatcatctcaagggagctaagtaaagtaaaagttcaatgaatatttgctgaataaataaatGATGCAGTGATTCCAAAACTCCCTAGA------AATCCATTGTGTGGTTCAGTAGAGTCTAGTATTGAACCATGATCTCTCATCAGCAGTGGCAAGAAGAAATCTTTGTGTCAGGTAAAAGAAGAA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16844646 806 + 184069350 ACGGATCCTCG-----AGTTTCTGTTTTGCTATGTTTAGTGCATTTCAATTGCA-AATGTCAACAATTGCA-TTTTTT-GGTTTCTAATCTCCAGCAGTATAATCAATAATGTGCATTGCATTTGTCAT-TTTAAGA-TGACAGCACTCAGCAGCAAGAACCTAACA----AAACAAGCTAAAGA-ATC--ATTAAGTTTCAGTACGCAACTGCCACCTTAACAAGCGATCATTAAAGTAATA--TTTTCTGCAGTGAAACCCCTATAGTTGCTAATAATTGATGATAGCTCATGTTAGAAACCA-ATAACAGATACACATCTTCAATACATTAGATGGAATATAAGACAGAAAATCAGTAAGGAGAAGAAAAAAGAGACAGAAAGAAACCTAATTATATCAGACACCCAGGAACTCTGAAATGAACTCGTTTCATCTCAGAGGAACATAAAGAAATGTAGAGGAGTCAATTTAAATTTATTATCTGCCTGCTGCTGTTTCAGCTGCTGCTAACAGACGTTCCACAGAGAACCTATAGGGAGAAAAGCATTTTTATATGTTCTCCTGGTAAGAAGCTGGGGTGAGGGTGTT-----GAGGATGAATGCAAATGTGAATATATGGTACTTCATCAGGACCAAGTTTTCTGTTACCTTCTCAACAGATCTAAGTAAAGTAAAAGTTCAATGAACATTTGCTGAATAAATAAACGATGCAGTGATTCCAAAACTCCCTAGA------AATCCATTGTGTGGTGCAGTAGAGTCTAGTATTGAACCATGACCTCTCCTCAGCAGTGGCAAGAAGAAATCTTTGTGTCAGGTAAAAGAAGAA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20894438 806 + 189454096 ACGGATCCTCG-----AGTTTCTGTTTTGCTATGTTTAGTGCATTTCAATTGCA-AATGTCAACAATTGCA-TTTTTT-GGTTTCTAATCTCCAGCAGTATAATCAATAATGTGCATTGCATTTGTCAT-TTTAAGA-TGACAGCACTCAGCAGCAAGAACCTAACA----AAACAAGTTAAAGA-ATC--ATTAAGTTTCAGTACGCAACTGCCACCTTAACAAGCGATCATTAAAGTAATA--TTTTCTGCAGTGAAACCCCTATAGTTGCTAATAATTGATGATAGCTCATGTTAGAAACCA-ATAACAGATACACATCTTCAATACATTAGATGGAATATAAGACAGAAAATCAGTAAGGAGAAGAAAAAAGAGACAGAAAGAAACCTAATTATATCAGACACCCAGGAACTCTGAAATGAACTCGTTTCATCTCAGAGGAACATAAAGAAATGTAGAGGAGTCAATTTAAATTTATTATCTGCCTGCTGCTGTTTCAGCTGCTGCTAACAGACGTTCCACAGAGAACCTATAGGGAGAAAAGCATTTTTATATGTTCTCCTGGTAAGGAGCTGGGGTGAGGGTGTT-----GAGGATGAATGCAAATGTGAATATATGGTACTTCATCAGGACCAAGTTTTCTGTTACCTTCTCAACAGATCTAAGTAAAGTAAAAGTTCAATGAACATTTGCTGAATAAATAAACGATGCAGTGATTCCAAAACTCCCTAGA------AATCCATTGTGTGGTGCAGTAGAGTCTAGTATTGAACCATGACCTCTCCTCAGCAGTGGCAAGAAGAAATCTTTGTGTCAGGTAAaagaagaa i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16485110 806 + 178775436 ACGGATCCTCG-----AGTTTCTGTTTTGCTATGTTTAGTGCATTTCAATTGCA-AATGTCAACAATTGCA-TTTTTT-GGTTTCTAATCTCCAGCAGTATAATCAATAATGTGCATTGCATTTGTCAT-TTTAAGA-TGACAGCACTCAGCAGCAAGAACCTAACA----AAACAAGCTAAAGA-ATC--ATTAAGTTTCAGTACGCAACTGCCACCTTAACAAGCGATCattaaagtaata--ttttctgTAGTGAAACCCCTATAGTTGCTAATAATTGATGATAGCTCATGTTAGAAACCA-ATAACAGATACACATCTTCAATACATGAGATGGAATataagacagaaaatcagtaaggagaagaaaaaagagacagaaagaaacctAATTATATCAGACACCCAGGAACTCTGAAATGAACTCGTTTCATCTCAGAGGAACATAAAGAAATGTAGAGGAgtcaatttaaatttattatctgCCTGCTGCTGTTTCAGCTGCTGCTAACAGACGTTCCACAGAGAACCTATAGGGAGAAAAGCATTTTTATATGTTCTCCTGGTAAGAAACTGGGGTGAGGGTGTT-----GAGGATGAATGCAAATGTGAATATATGGTACTTCATCAGGACCAAGTTTTCTGTAACCTTCTCAACAGAGCTAAGTAAAGTAAAAGTTCAATgaacatttgctgaataaataaacgATGCAGTGATTCCAAAACTCCCTAGA------AATCCATTGTGAGGTGCAGTAGAGTCTAGTATTGAACCATGACCTCTCCTCATCAGTGGCAAGAAGAAATCTTTGTGTCaggtaaaagaagaa i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19967849 806 - 48547382 ACGGATCCTCG-----AGTTTCTGTTTTGCTATGTTTAGTGCATTTCAATTGCA-AATGTCAACAATTGCA-TTTTTT-GGTTTCTAATCTCCAGCAGCATAATCAATAATGTGCATTGCATTTGTCAT-TTTAAGA-TGACAGCACTCAGCAGCAAGAACCTAACA----AAACAAGCTAAAGA-ATC--ATTAAGTTTCAGTACGCAACTGCCACCTTAACAAGCGATCATTAAAGTAATA--TTTTCTGCAGTGAAACCCTTATAGTTGCTAATAATTGATGATAGCTCATGCTAGAAACCA-ATAACAGATACACATCTTCAATACATGAGATGGAATATAAGACATAAAATCAGTAAGGAGAAGAAAAAAGAGACAGAAAGAAACCTAATTATATCAGACACCCAGGAACTCTGAAATGAACTCGTTTCATCTCAGAGGAACATAAAGAAATGTAGAGGAGTCAATTTAAATTTATTATCTGCCTGCTGCTGTTTCAGCTGCTGCTAACAGACGTTCCACAGAGAACCTATGGGGAGAAAAGCATTTTTATATGTTCTCCTGGTAAGAAGTTGGGGTGAGGGTGTT-----GAGGATGAATGTAAATGTAAATATATGGTACTTCATCAGGACCAAGTTTTCTGTTACCTTCTCAACGGAGCTAAGTAAAGTAAAAGTTCAATGAACATTTGCTGAATAAATAAACGATGCAGTGATTCCAAAACTCCCTAGA------AATCCATTGTGTGGTGCAGTAGAGTCTAGTATTGAACCATGACCTCTCCTCAGCAGTGGCAAGAAGAAATCTTTGTGTCAGGTAAAAGAAGAG i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21329018 809 - 190850796 ACAGATCCTCA-----AGTTTCTGTTTTGCCAAGTTTAGTGCATTTCAACTGCA-AATGTCAACAACTGCATTTTTTT-GGATTCTAAT-TCCAGCAGCATAATCAATAATGTGCATTACATTTGTCAG-TTTAAGA-TGACAGCACTCAGTAGCAAGAACCTATCAAACAAAACAAGCTAAAGA-ATC--GTTAAGTTTCAGTACACAACTGCCACCTTAACAAGCAATCATTAAAGTAATA--TTTTCTGCAGTGAAACCCCTATCGTTGCTAACCATTTATGATAGTTAACGTTAGAAACCA-ATAACAGATACACATCTTCAATACATAAGATGGAATATAAGACAGAAAGTCAGTAAGGAAAAGAAAAGGGAGACAGAAAGAAACCTAATTATATTAGACACCCAGGAACTCTGAAATTAACTCATTTCATCTCAGAGGAACATAAAGAAATGTAGAGGAGTCAATTTAAATTTATTGTCTGCCTGCTGCTGCTTCAGCTGCTGCTAACAGACGTTCTATAGAGAACCTATGGGGAGAAAAGCATTTTTATATGTTCTCCTGGTAAGAAGCTGGGGTGATGGTGTT-----GAGGATGAATGTAAATGTGAATATATGGTACTTCATCAGGACCAAGTTTTATGTTACCATTTCAATGGAGCTAAGTAAAGTAAAA-TTCAATGAACATTTGCTGAATAAATAAATGATGCAGTGATTCCTAAACTCCCTAGA------AATCCATTGTGTGGTGCAGTAGAGTCTAGCACTGAACCATGACCTTTCAACAGCAGTGGTGAGAAGAAATCTTTGTATCAAGTAAAAGAAGAA i calJac3.chr3 C 0 C 0 s mm10.chr5 49304249 799 + 151834684 atgAATTCTCATTTAGAGTATCTACTCTGCCAACATTAGTTCACTCTTTTTTTGTTATGTCAATAATTGTC-TCTGTTAGGTTTCTAATTGTTTACAGGATAATCAACAATTTACATGATGTTAGTCAT-TTTTAGATTGACAACACTCAGTAGCAAG---TTTACAAGCAAGAC-ATCTAGAGATGTCATATTAGACTTAAAAACACAATTGCCACTACAAGTAAGGATCTACTAAGAAATAATTTTTCAGTATTGGTGCTACTGGAGATGCTGATCATTGGGAGTGG-GAATTCTAAAAACCACATACAAGATG--------CAATGCCCATGATGTAATTTAAGAGTGTAAGCCA------AGAAGTTAAAGGAGACAGAGGGAGACCTAATTATATTAGGCACCCAGGAATTCTGGAACGAACTCATTTGATCACAGAGGCACATAAAGAAATATAAAGGAATCTATTTAAATTTATTATGTGCCTGCTGCTAGTTCAGCTGTTGCTAACAGACGCTCCATGGAGAGCCTATGGAGAGAAGAGCATTCTGATATGTTCTCCTGGTATGAACCTGGGGAAATAGAGTTACCAAAAAAAAAAAACTAAATGAAAATATGTGGTA---TATCAGGGCCAAGTAAGGTTTTA---GTTTAACGATGCTCAATCTACTAAAAGTTCAATAAACCTTTATTGAACAAATTAATGA-------ATGCCAATATACTTTGAACCCTAGAATCTATGGTGAGGTGTGGTAGAGGGCCCTGTTTGACCTT--CTGATTATCAATAATAAGGAGAAGGAA--ATTGTGTTATATAATAGGAAAA i mm10.chr5 I 896 I 11 s canFam3.chr3 3893644 764 - 91889043 CTGGCTCCTCA-----GATTTCTGTTTTGCCAAGGTTGGTGCATTTTAATTTTA-GCTGTCCAAATCTGCA-CTTTTC-AGATCCTAATCTCTTGCAGCATAATGAATCACGTCCATTGCATTTGTCATCTTTAAGA-TGACAGCTCTCAGCAACAAA----CAACA----AAACAATCCAAAGA-CACACATTAGGCTTTAGAACACAACCGCTACCCTGAGAAGCGATTGATAAAGAAGTA--ATCTCTGCA------------CGGTTGCTAATCATTGATGGTACCTAATGTTGGAAATGA-ATAAGAGATCCGCGTCTTCAACACATGAGATG-----TGAGACAGAAAGTCAAAGAAGAGAAGGAAGA-GAGACACAGGGAAAACTAATTATATTAGATACCCAGGAACTCTGAAATGAGCTCCATTCATCTC--AGGAACATAAAGAAATATAAGAGAGTCAATTTAAATTTATTATCTGCCTGCTGCTGCTTCAGCTGCTGCTAACAGACACCCCATAGAGAACCTTTGGGGAGAAAAGCATTCTTGTATGTTCTCTTCATATGAACCCAGGGTGATGATGTT-----GAGAATAAATGTAAATGTGAAAAAATGGTGCTTCGTCAGGGTCAAGTTTTATGCTACCAGCTCAATGAAGCTAGGCAGAGCAAAAGTTCAACAAACATTTGTTGAGTTTATTTATGAGACC---ATTTGTGAGCCATGTAGA------AATCCAT-----GGTACAATAG-------------ACCATGACCTCTCATCAGCAGTGGAGAAAAGAACCTTTTGTGTCAGGCAAAGGAAGAA i canFam3.chr3 C 0 C 0 a score=29227.000000 s hg38.chr4_KI270790v1_alt 205508 10 + 220246 acaatagggg s panTro4.chr4 21594483 10 + 193495092 ACAATAGGgg i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21769914 10 + 198332218 ACAACAGGgg i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20378950 10 - 85365473 ACAACAGGgg i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16845452 10 + 184069350 ACAATAGGTg i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20895244 10 + 189454096 acaataggtg i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16485916 10 + 178775436 acaataggtg i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19968655 10 - 48547382 ACAATAGGTg i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21329827 9 - 190850796 ACAAT-GGgg i calJac3.chr3 C 0 C 0 s canFam3.chr3 3894408 10 - 91889043 ACAATAGTGG i canFam3.chr3 C 0 C 0 e mm10.chr5 49305048 11 + 151834684 I a score=800347.000000 s hg38.chr4_KI270790v1_alt 205518 270 + 220246 ccaggcatggtggctcaagcctgtaatcccagcctttgggaggctgaagcagatgaatcacctgaggtcaagagttcaagatcaacctggccaatatggggaaaacccatctctacgaaaactacaaaaaattaggtgggcatgggaatgggcacctgtaatcccagctacttgggaggctgaggcagaagaatcacttgaacctgggaggcagaggttacagcgagctgagattgtgccattgtgctccagcatgggcaacaagagtga s panTro4.chr4 21594493 270 + 193495092 ccaggcatggtggctcaagcctgtaatcccagcctttgggaggctgaagcagatgaatcacctgaggtcaagagttcaagatcaacctggccaatatggggaaaacccatctctactaaaactacaaaaaataaggtgggcttggtaatgggcacctgtaatcccagctacttgggaggctgaggcagaagaatcacttgaacccaggaggcagaggttacagtgagctgagattgtgccattgtgctccagcatgggcaacaagagtga i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21769924 270 + 198332218 ccaggcatggtgactcaagtctgtaatcccagcctttgggaggctgaagcagatgaatcacctgaggtcaagagttcaagatcagcctggccaatatggggaaaacccatttttactaaaactacaaaaaattaggtgggcatggcaatgggcatctgtaatcccagctacttggcaggctgaggcagaagaatcacttgaacccgggaggcagaggttacagcgagctgagattgtgctattgcgctccagcctgggcaacaagagtga i ponAbe2.chr4 C 0 I 582 s nomLeu3.chr20 20378960 270 - 85365473 ccaggcatgctggctcaagcctgtattcccagcctttgggaggctgaagcagatgaatcacctgaggtcaagagttcgagatcagcctggccaatatggggaaaacccgtctctactaaaactacaaaaaattaggcgggcatggtaatgggcacctgtaatcccagctacttgggaggctgaggcaggagaatcacttgaacccgggaggcagaggttacagcgagctgagattgtgccattgcgctccagcccaggcaacaagagtga i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16845462 270 + 184069350 ccaggcatggtggctcaagcctgtaatcccagcctttgggaggccgaagcaggtgaatcacctgaggtcaagagttcaagatcagcctggtcaacatggggaaaccccgtctctactaaaaatacaaaaaattaggtggacatggtaatgggcgcctgtaatcccagctacctggggggccaaggcaggagaatcacttgaacccgggaggcagaggttacagtgagctgaaattgtgccattgtgttccagcctaggcaacaagagcga i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20895254 270 + 189454096 ccaggcatggtggctcaagcctgtaatcccagcctttgggaggccgaagcaggtgaatcacctgaggtcaagagttcaagatcagcctggtcaacatggggaaaccccgtctctactaaaaatacaaaaaattaggtggacatggtaatgggcgcctgtaatcccagctacctgggaggccgaggcaggagaatcacttgaacccgggaggcagaggttacagtgagctgaaattgtgccattgtgttccagcctaggcaacaagagcga i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16485926 270 + 178775436 ccaggcatggtggctcaagcctgtaatcccagcctttgggaggccgaagcaggtgaatcacctgaggtcaagagttcaagatcagcctggtcaacatggggaaaccccgtctctactaaaaatacaaaaaattaggtggacatggtaatgggcgcctgtaatcccagctacctgggaggccgaggcaggagaatcacttgaacccgggaggcagaggttacagtgagctgaaattgtgccattgtgttccagcctaggcaacaagagcga i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19968665 270 - 48547382 ccaggcatggtggctcaagactgtaatcccagcctttgggaggccgaagcaggtgaatcacctgaggtcaagagttcaagatcagcctggtcaacatgaggaaaccccatctctattaaaaatacaaaaaattaggtggacatggtaatgggcgcctgtaatcccagctacctgggaggctgaggcaggagaatcacttgaacccgggaggcagaggttacagtgagctgaaattgtgccattgtgttccagcctaggcaacaagagtga i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21329836 269 - 190850796 ccagacatagtggctcaagcctgtaatcccagccttgggggtaccaaagctggtgaatcacctgaggtcaggagttcaagaccagcttggccaacatgaggaaaccctgtccctattaaaaatgt-aagaattagccaggcatggtgatgggtgcctgtaatcccagctacttgggaggctgaagcgggagaatcgcttaaacaagagatgcaaagattacagtaagctgagattgtgccattgcactcaagcttgggcaacaaaagtga i calJac3.chr3 C 0 C 0 e mm10.chr5 49305048 11 + 151834684 I e canFam3.chr3 3894418 0 - 91889043 C a score=31171.000000 s hg38.chr4_KI270790v1_alt 205788 12 + 220246 agctccatctca s panTro4.chr4 21594763 12 + 193495092 agctccatctca i panTro4.chr4 C 0 C 0 s nomLeu3.chr20 20379230 12 - 85365473 agctccatctca i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16845732 12 + 184069350 agctccatctca i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20895524 12 + 189454096 agctccatctca i macFas5.chr5 C 0 I 218 s papAnu2.chr5 16486196 12 + 178775436 agctccatctca i papAnu2.chr5 C 0 I 13 s chlSab2.chr27 19968935 12 - 48547382 agctccatctca i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21330105 12 - 190850796 aactccatctca i calJac3.chr3 C 0 C 0 e mm10.chr5 49305048 11 + 151834684 I e canFam3.chr3 3894418 0 - 91889043 C e ponAbe2.chr4 21770194 582 + 198332218 I a score=2548.000000 s hg38.chr4_KI270790v1_alt 205800 1 + 220246 a s panTro4.chr4 21594775 1 + 193495092 a i panTro4.chr4 C 0 C 0 s nomLeu3.chr20 20379242 1 - 85365473 a i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16845744 1 + 184069350 a i rheMac3.chr5 C 0 M 447 s macFas5.chr5 20895754 1 + 189454096 a i macFas5.chr5 I 218 C 0 s papAnu2.chr5 16486221 1 + 178775436 a i papAnu2.chr5 I 13 I 41 s chlSab2.chr27 19968947 1 - 48547382 a i chlSab2.chr27 C 0 I 35 s calJac3.chr3 21330117 1 - 190850796 a i calJac3.chr3 C 0 C 0 e mm10.chr5 49305048 11 + 151834684 I e canFam3.chr3 3894418 0 - 91889043 C e ponAbe2.chr4 21770194 582 + 198332218 I a score=5201.000000 s hg38.chr4_KI270790v1_alt 205801 12 + 220246 aaaaaaaaaaaa s panTro4.chr4 21594776 12 + 193495092 aaaaaaaaaaaa i panTro4.chr4 C 0 C 0 s nomLeu3.chr20 20379243 9 - 85365473 aaaaaaaaa--- i nomLeu3.chr20 C 0 C 0 s macFas5.chr5 20895755 9 + 189454096 agaagaagg--- i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16486263 9 + 178775436 agaagaagg--- i papAnu2.chr5 I 41 C 0 s chlSab2.chr27 19968983 9 - 48547382 ggaagaagg--- i chlSab2.chr27 I 35 C 0 s calJac3.chr3 21330118 9 - 190850796 aaaataaaa--- i calJac3.chr3 C 0 C 0 e mm10.chr5 49305048 11 + 151834684 I e rheMac3.chr5 16845745 447 + 184069350 M e canFam3.chr3 3894418 0 - 91889043 C e ponAbe2.chr4 21770194 582 + 198332218 I a score=50378.000000 s hg38.chr4_KI270790v1_alt 205813 105 + 220246 aa-gaagaag-----aggaagaagaa------aagaaaaagaagaagaagaaggagaaggagaaggagaaggagaaggagaagaggaaaaagaagaagaagaaaaaaaaA-ACAG----------------------GGC s panTro4.chr4 21594788 111 + 193495092 aaagaagaag-----aggaagaagaagaaaagaagaagaagaggaagaagaagaagaagaagaagaagaagaagaagaagaagaagaaaaagaagaagaagaaaaaaaaA--CAG----------------------GGC i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21770776 104 + 198332218 aa-gaagaag-----aagaagaagaa------agaagaaagaaga--aagaagaagaagaagaagaagaagaggaggaagaagaagaagaagaGAAAAAACAAAAACAAACACAA----------------------GGC i ponAbe2.chr4 I 582 C 0 s nomLeu3.chr20 20379252 43 - 85365473 -------------------------------------------------------------------------gaagaagaagaagaagaaTTAAAAATGAAAACAAAAA--CAG----------------------GGC i nomLeu3.chr20 C 0 C 0 s macFas5.chr5 20895764 118 + 189454096 aa-gaagaag-----aagaagaag--------aagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagcagcagcag--cagcagcagcagcagcagc------ggc i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16486272 127 + 178775436 aa-gaagaaggaagaaggaagaagga---agaaagaaggagaagaaggagaagaagaaggaggaggaggaggaggaggagaag-agaagaaggagaaggagagggagaag--gagaaggagaagaagaagc------agc i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19968992 135 - 48547382 aa-gaagaaggaagaaggaagaagaa--gaggaagaagaagaggaagaagaagaagaagaagaagaaaaaaaagaagaagaagaagaagaagaagaagaagaagcagcag--cagcagcagcagcagcagcagcagaagc i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21330127 31 - 190850796 -----------------------------------------------------aaga-----------------------------aaagagaaaaagaaTCAATAGGGA--GAG------------------------- i calJac3.chr3 C 0 C 0 e mm10.chr5 49305048 11 + 151834684 I e rheMac3.chr5 16845745 447 + 184069350 M e canFam3.chr3 3894418 0 - 91889043 C a score=23530.000000 s hg38.chr4_KI270790v1_alt 205918 19 + 220246 TAC---------------------------------------------TGCCAGTTATTTAATA s panTro4.chr4 21594899 19 + 193495092 TAC---------------------------------------------TGTCAGTTATTTAATA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21770880 19 + 198332218 CAC---------------------------------------------TGCCAGTTATTTGATA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20379295 19 - 85365473 CAC---------------------------------------------TGCCAGTTATTTGATG i nomLeu3.chr20 C 0 C 0 s macFas5.chr5 20895882 64 + 189454096 cacagaagcagaaataaataaaagaggaaaaaTCAAAAATAATTCCAGTGCCTGTTACTTGATA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16486399 64 + 178775436 cacagaagcagaaataaataaaagaggaaaaatcaaaaataattccAGTGCCTGTTACTTGATA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19969127 64 - 48547382 cacagaagcagAAATAAATAAAAGAGGAAAAATCAAAAACAAGTCCAGTGCCAGTTACTTGATA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21330158 16 - 190850796 ------------------------------------------------GGCCAGTTACTTGATA i calJac3.chr3 C 0 C 0 s canFam3.chr3 3894418 19 - 91889043 ---------------------------------------------GAGGACTGGTTACTTGATA i canFam3.chr3 C 0 C 0 e mm10.chr5 49305048 11 + 151834684 I e rheMac3.chr5 16845745 447 + 184069350 M a score=45162.000000 s hg38.chr4_KI270790v1_alt 205937 13 + 220246 CCTTTTCTATATC s panTro4.chr4 21594918 13 + 193495092 CCTTTTCTATATC i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21770899 13 + 198332218 CCTTTTCTATATC i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20379314 13 - 85365473 CCTTTTCTATATC i nomLeu3.chr20 C 0 C 0 s macFas5.chr5 20895946 13 + 189454096 CCTTTTCTATATC i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16486463 13 + 178775436 CCTTTTCTGTATC i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19969191 13 - 48547382 CCTTTTCTATATC i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21330174 13 - 190850796 CCTTTTCTATATC i calJac3.chr3 C 0 C 0 s mm10.chr5 49305059 13 + 151834684 CTTTCTTCATAGC i mm10.chr5 I 11 C 0 s canFam3.chr3 3894437 13 - 91889043 CCTTTCCTACATC i canFam3.chr3 C 0 C 0 e rheMac3.chr5 16845745 447 + 184069350 M a score=1088797.000000 s hg38.chr4_KI270790v1_alt 205950 340 + 220246 ------TGCTAG--CATC--------CACCAA--CTGGT----GATAAGAGGGACTTCTTAATCTTAAAGGCTCCATTGAAACATGTCTCCACTTCTCTCTTACCCTCAGGAAGTATGCACTAGGCCAGTTGCGTTCAATACCACATACAGAGTTTTCCATCATAAGTACAGTACATA--TTTCTCCAATTTTTTTCATGTAAAATATAAATTG-AAAAAAAAATCAGTGCAACAAAAGAAAATATTCAAAA-TCCAAAGACAAGTGGAGCCTCAGAGCAAATAGATGTT-AAGAAAATCCAAGCTAGACTCTGCCTTCTTGATTTTCATATCTAAGTGATAGAAAAC-ttttttctt--attttgtttt------ s panTro4.chr4 21594931 340 + 193495092 ------TGCTAG--CATC--------CACCAA--CTGGT----GATAAGAGGGACTTCTTAATCTTAAAGGCTCCATTGAAACATGTCTCCACTTCTCTCTTACCCTCAGGAAGTATGCACTAGGCCAGTTGCGTTCAATACCACATACAGGGTTTTCCATCATAAGTACAGTACATA--TTTCTCCAATTTTTTTCATGTAAAATATAAATTG-AAAAAAAAATCAGTGCAACAAAAGAAAATATTCAAAA-TCCAAAGACAAGTGGAGCCTCAGAGGAAATAGATGTT-AAGAAAATCCAAGCTAGACTCTGCCTTCTTGATTTTCATATCTAAGTGGTAGAAAGC-TTTTTTCTT--ATTTTGCTTT------ i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21770912 335 + 198332218 ------TGCTAG--CATC--------CACCAA--CTGGT----GATAAGAGGGACTTCTTAATCTTCAAGGCTCCATTGAAACATGTCTCCACTTCTCTCTTACCCTCAGGAAGTATGCACTAGGCCAGTTGTGTTCAATACCACATACAGGGTTTTCCATCATAAGTACAGTACATA--TTTCTCCAATTTTTTTCATGTAAAATATAAATTG-AAAAAGCAATCAGTGCAACAAAAGAAAATATTCAAAA-TCCAAAGACAAGTGGAGCCTCAGAGCAAATAGATGTT-AAGAAAATCCAAGCT--ACTCTGCCTTCTTGATTTTCATATCTAAGTGCTAGAAAGC-TCTTTTCTT--ATTTTGT--------- i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20379327 333 - 85365473 ------TGCTAG--CATC--------CACCAA--CTGGT----GATAAGAGGGACTTCTCAATCTTCAAGCCTCCCTTGAAACATGTCTCCACT--TCTCTTACCCTCAGGAAGCATGCACTAGGCCAGTTGCGTTTAATACCACATACAGGGTTTTCCATCATAAGTACAGTACATA--TTTCTTCAATTTTTTTCACGTAAAATATAAATT--AAAAAAAAATCAGTGCAAC-----AGAATATTCAAAC-TCCAAAGACAAGTGGAGCCTCAGACCAAATAGATGTT-AAGAAAATCCAAGCTAGACTCTGTCTTCTTGATTTTCATATCTAAGTGCTAGAAAGCtttttttctt--attttgtttt------ i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16846195 342 + 184069350 ------TGCTAG--CATC--------CACCATGCCTGGT----GATGAGAGGGACTTCTTAATCTTCAAAGCTCCATTGAAACATGTCTCCACTTCTCTCTTACCCTCAGGAAGTATGCACTAGGCCAGTTGCGTTTAATATCACATACAGGATTTTCCATCATAAATGCAGTATATA--TTTCTGTAA-TTTTTTCATGTAAAATATAAATTG-AAAAAAAAATCAGTGTGACAAAAGAAAATATTCAAAC-TCCAAACATAAGTGGAGCCTCAGAGCAGATAGATATT-AAGAAAATCCAACCTAGACTCTGCCTTCTTGATTTTCATATCTAAGTGCTAGAAAGCTTTTTTTCAt--attttatttt------ i rheMac3.chr5 M 447 C 0 s macFas5.chr5 20895959 341 + 189454096 ------TGCTAG--CATC--------CACCAG--CTGGT----GATGAGAGGGACTTCTTAATCTTCAAAGCTCCATTGAAACATGTCTCCACTTCTCTCTTACCCTCAGGAAGTATGCACTAGGCCAGTTGCGTTTAATATCACATACAGGATTTTCCATCATAAATGCAGTATATA--TTTCTGTAATTTTTTTCATGTAAAATATAAATTG-AAAAAAAAATCAGTGTGACAAAAGAAAATATTCAAAC-TCCAAAGATAAGTGGAGCCTCAGAGCAGATAGATATT-AAGAAAATCCAACCTAGACTCTGCCTTCTTGATTTTCATATCTAAGTGCTAGAAAGCTttttttcat--attttatttt------ i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16486476 342 + 178775436 ------TGCTAG--CATC--------CACCAG--CTGGT----GATGAGAGGGACTTCTTAATCTTCAAAGCTCCATTGAAACATGTCTCCACTTCTCTCTTACCCTCAGGAAGTATGCACTAGGCCAGTTGTGTTTAATATCACATACAGGATTTTCCATCATAAATGCAGtatata--tttctgtaattttttgcatgtaaaatataaattgaaaaaaaaaatcagtgtgacaaaagaaaatattcaaac-tcCAAAGATAAGTGGAGCCTCAGAGCAGATAGATATT-AAGAAAATCCAACCTAGACTCTGCCTTCTTGATTTTCATATCTAAGTGCtagaaagctttttttcat--attttatttt------ i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19969204 342 - 48547382 ------TGCTAG--CATC--------CACCAG--CTGGT----GATGAGAGGGACTTCTTAATCTTCAAAGCTCCACTGAAACATGTCTCCACTTCTCTCTTACCCTCAGGAAGTATGCACGAGGCCAGTTGCATTTAATATCACATACAGGATTCTCCATCATAAATGCAGTATATA--TTTCTGTAATTTTTTTCATGTAAAATATAAATTGAAAAAAAAAATCAGTGTGACAAAAGAAAATATTCAAAC-TCCAAAGATAAGTGGAGCCTCAGAGCAGATAGATATT-AAGAAAATCCAACCTAGACTCTGCCTTCTTGATTTTCATATCTAAGTGCTAGAAAGCTttttttcat--attttatttt------ i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21330187 316 - 190850796 ------TGCTAG--CATC--------CATGAA--CTGGG----GATGAGAGGGACTTTTTAATCTTCGCAGCTCCACTGAAAC--GTCTCCACTTCTCTCTTACCCTCAGGAAGTATGCACTAGGCCAGTTGCATTTAAAACCACATGAAGCATTTTCCATCATAATTACAGTATATA--TTTCTCCAA-TTTTTTAATGTAACATATAAATTG--AAAAAAAATCAGTGTGACAAAAGAAAATATTCAAAC-T---------------GCCTCGCAGCAGATAGATGTT-AAGAAAATCCAAGCTAGACTCTGCCTTTTTGATTTTCATATCTTAGTAGTAGAAAGCTTTTTTAAAT--------TATT------ i calJac3.chr3 C 0 C 0 s mm10.chr5 49305072 327 + 151834684 --------TTAG--CATCAGTTTGTTCTCCAT--CTTGTGCTAGGTGAGCAGTAACTTACCATCTTTGAGGCTCTGTTTAAGC--------AGTTCTCTTCTATGCTGAGTAAATGCACAGGAGGACAGCTGCACTTAA-ACCACAAAGAACATTTTCTGTAGTGAGTAGAG---------TCCTCCAATCTTTCCAGGGGAAAAAATACATGG-GAATAATAATCAG--------AAGAAAATATGCAAAG-TTCCAAGACAAATGGAACCTTGTAGCATAAAAACATTAAAGAAAATTCAAATTAGGTTCTGTTTTTCTGAATTTCCCAACTAAATGCTGGAAATTTTCTTTACAA--GTTTGATTT------- i mm10.chr5 C 0 I 96 s canFam3.chr3 3894450 350 - 91889043 TATTCACACCAGTTTATC--------TACCAG--CTGGT----GATGAAAATTCTCTTTTAATCTTTAGGGCCCAATTTAGACAGGATTCCATTTCTTGTTTATGCTCAAGAAATGTGCATTAGACCAGCTGCATTTAATATCACAGA-AGTACTTTCCATGGCAAGTACAGTACATGCTTTTTTCCAA-TTTTTCCATAGAGAAAATAAGTAGAGAAAAAGGATTA-----AGAGAAGAAAATATTCAAACATCTGAAGACAAACGAAGCCTTACAACTGATGGATGTC-AAAACA--TCAAGCTAGACTCTACTGTC--AATTTTCCTATCCAAATTCTGGCAAGTTTTTGTTTGTTCGTTTAGTGTGGAGAAT i canFam3.chr3 C 0 C 0 a score=107454.000000 s hg38.chr4_KI270790v1_alt 206290 43 + 220246 ---------attttc--tttatt--------------------tgttttACAGTAAAAGAGAATGACTCGGAGC s panTro4.chr4 21595271 43 + 193495092 ---------ATTTTC--TTTATT--------------------TGTTTTGCAGTAAAAGAGAATGACTCGAAGC i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21771247 37 + 198332218 -----------------TTTATT--------------------TGTTTTACAGTAAAAGAGAATGACTCAAAGC i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20379660 45 - 85365473 ---------attttttgtttgtt--------------------tgttttACAGTAAAATAGAGTGACTCAAAGC i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16846537 39 + 184069350 ---------at------tttatt--------------------tGTTTTACAGTAAAAAAGAATGACTCAAAGC i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20896300 39 + 189454096 ---------at------tttatt--------------------tgttttaCAGTAAAAAAGAATGACTCAAAGC i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16486818 39 + 178775436 ---------at------tttatt--------------------tgttttacagcAAAAAAGAATGACTCAAAGC i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19969546 39 - 48547382 ---------at------tttatt--------------------tattttaCAGTAAAAAAGAATGACTCAAAGC i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21330503 39 - 190850796 ---------AT------TTCATT--------------------TGTTTTACAGTAAAGGAAGATGACTCAAAGC i calJac3.chr3 C 0 C 0 s canFam3.chr3 3894800 74 - 91889043 CCATCCATGATTACCAAGCTGTTCTCACAGACCTAAATGACCATACTTTACAGTAAAAGGAAATGATTCAAAGC i canFam3.chr3 C 0 C 0 e mm10.chr5 49305399 96 + 151834684 I a score=1365.000000 s hg38.chr4_KI270790v1_alt 206333 1 + 220246 T s panTro4.chr4 21595314 1 + 193495092 T i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21771284 1 + 198332218 T i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20379705 1 - 85365473 T i nomLeu3.chr20 C 0 C 0 s calJac3.chr3 21330542 1 - 190850796 T i calJac3.chr3 C 0 C 0 s canFam3.chr3 3894874 1 - 91889043 T i canFam3.chr3 C 0 C 0 e mm10.chr5 49305399 96 + 151834684 I e chlSab2.chr27 19969585 0 - 48547382 C e macFas5.chr5 20896339 0 + 189454096 C e rheMac3.chr5 16846576 0 + 184069350 C e papAnu2.chr5 16486857 0 + 178775436 C a score=2820.000000 s hg38.chr4_KI270790v1_alt 206334 3 + 220246 GTT s panTro4.chr4 21595315 3 + 193495092 GTT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21771285 3 + 198332218 GTT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20379706 3 - 85365473 GTT i nomLeu3.chr20 C 0 C 0 s calJac3.chr3 21330543 3 - 190850796 GTT i calJac3.chr3 C 0 C 0 e mm10.chr5 49305399 96 + 151834684 I e chlSab2.chr27 19969585 0 - 48547382 C e macFas5.chr5 20896339 0 + 189454096 C e rheMac3.chr5 16846576 0 + 184069350 C e canFam3.chr3 3894875 0 - 91889043 C e papAnu2.chr5 16486857 0 + 178775436 C a score=287979.000000 s hg38.chr4_KI270790v1_alt 206337 578 + 220246 GTT--TTTTTTCCCCCATTCTGTTTTTTTTCTttt-----tttttttttcattgtactttaatttctagggtacatgtgcacaacgtgcaggtttgttacatatgtatacatgtgccatgttggtgtgctgcacccattaactcgtcatttacattaggtatatctcctaatgctatccctcccccctccccc-accccacaacaggccccagtgtgtgatggtccccttcctgtgtccaagtgttctcattgttcaattcccacctatg------------cggtgtttgtttttttgtccttgcgatactttgctgagaatgatggtttccagcttcatccatgtccctacaaaggacatgaactagtcctttattatggctgcatagtattccatggtgtatatgtgtcacattttctgaatccagtctatcatgatggacatttgggttggttccaagtctttgctattgtgaatagtgccacagtaaacatacatgtgcatgtgtctttatagcagcttgatttataatcctttgggtatatacccagtaatgggatggctgagtcaaatggtatttctagttctagattcct s panTro4.chr4 21595318 582 + 193495092 CTT--TTTTCCCCCCCATTCTGTttcttttctttt--------------aattgtactttaatttctagggtacatgtgcacactatgcaggtttgttacatatgtatacatgtgccatgttggtgtgctgcacccattaactcgtcatttacattaggtatatctcctaatgctatccctcccccctccccccaccccacaacaggccccggggtgtgatgttccccttcctgtgtccaagtgttctcattgttcaattcccacctatgagtgagaacatgtggtgtttggttttttgtccctgcgatagtttgctgagaatgatggtttccagcttcatccatgtccctacaaaggacatgaacttgtccttttttatggctgcatagtattccatggtgtatatgtgtcacattttctgaatccagtctatcatgatggacatttgggttggttccaagtctttgctattgtgaatagtgccacagtaaacatacatgtgcatgtgtctttatagcagcttgatttataatcctttgggtatatacccagtaatgggatggctgagtcaaatggtatttctagttctagattcct i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21771288 598 + 198332218 CTTTATTTTTTCCCCCAGTCTGTTTTTTTTTCTTTTCttttttttttttaattgtactttaagttctagggtacatgtgcacaatgtgcaggtttgttacatatgtgtacatgtgccatgtatatgtgctgcacccattaactcatcatttacattaggtatatctcctaatgctatccctcccctctcccctcaccccacaacaggccccggtgtgtgatgttccccttcctgtgtccaagtattctcattgttcaattctcacctatgagtgacaacatgcggtatttggttttttgtccctgcgatagtttgctgagaatgatggtttccagcttcatccatgtccctgcaaaggacacgaactcatccttttttatggctgcataatattccatggtgtatatgtgccacattttctgaatccagtctatcatgatggtcatttgggttggttccaagtctttgctattgtgaatagtgccgcagtaaacatatatgtacatgtgtctttatagcagcatgatttataatcctttgggtatatacccagtaatggtatggctgggtcaaatggtatttctagctctagattcct i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20379709 589 - 85365473 CT---TTTTTTCCCCCAGTCTGTTTTTTTTTCTTt---tctttttttttaattgtactttaaggtctagggcacatgtgcacaacctgcaggtttgttacatatgtatacatgtgccatgttggtgtgctgcacccattaacatgtcatttacattaggtatatctcctaatgctgtccccccaccccccc---accccacaacaggccccaatgtgtgatgttccccttcctgtgtccaagtgttctcattgttcaattcccacctatgagtgagaacatgcggtgtttggttttttgtccttgcgatagtttgctgagaatgatggtttccagcttcatccatgtccctacaaaggacatgaactcatccttttttatggctgcatagtattccatggtttatatgtgacacattttctgaatccagtctatcatgatggacgtttgggttggttccaagtctttgctattgtgaatagtgccgcaataaacatacatgtgcatgtgcctttatagcagcatgatttataatcctttgggtatatacccagtaatgggatggctgggtcaaatggtatttctagttctagattcct i nomLeu3.chr20 C 0 C 0 e mm10.chr5 49305399 96 + 151834684 I e chlSab2.chr27 19969585 0 - 48547382 C e macFas5.chr5 20896339 0 + 189454096 C e rheMac3.chr5 16846576 0 + 184069350 C e calJac3.chr3 21330546 0 - 190850796 C e canFam3.chr3 3894875 0 - 91889043 C e papAnu2.chr5 16486857 0 + 178775436 C a score=18340.000000 s hg38.chr4_KI270790v1_alt 206915 7 + 220246 TGTTCTT s panTro4.chr4 21595900 7 + 193495092 TGTTCTT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21771886 7 + 198332218 TGTTCTT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20380298 7 - 85365473 TGTTCTT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16846576 7 + 184069350 TGTTCTT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20896339 7 + 189454096 TGTTCTT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16486857 7 + 178775436 TGTTCTT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19969585 7 - 48547382 TGTTCTT i chlSab2.chr27 C 0 C 0 e mm10.chr5 49305399 96 + 151834684 I e calJac3.chr3 21330546 0 - 190850796 C e canFam3.chr3 3894875 0 - 91889043 C a score=9828.000000 s hg38.chr4_KI270790v1_alt 206922 3 + 220246 TAA s panTro4.chr4 21595907 3 + 193495092 TAA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21771893 3 + 198332218 TAA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20380305 3 - 85365473 TAA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16846583 3 + 184069350 TAA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20896346 3 + 189454096 TAA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16486864 3 + 178775436 TAA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19969592 3 - 48547382 TAA i chlSab2.chr27 C 0 C 0 s mm10.chr5 49305495 3 + 151834684 TAA i mm10.chr5 I 96 C 0 e calJac3.chr3 21330546 0 - 190850796 C e canFam3.chr3 3894875 0 - 91889043 C a score=7497.000000 s hg38.chr4_KI270790v1_alt 206925 2 + 220246 CA s panTro4.chr4 21595910 2 + 193495092 CA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21771896 2 + 198332218 CA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20380308 2 - 85365473 CG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16846586 2 + 184069350 CA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20896349 2 + 189454096 CA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16486867 2 + 178775436 CA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19969595 2 - 48547382 CA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21330546 2 - 190850796 CA i calJac3.chr3 C 0 C 0 s mm10.chr5 49305498 2 + 151834684 CA i mm10.chr5 C 0 C 0 e canFam3.chr3 3894875 0 - 91889043 C a score=996825.000000 s hg38.chr4_KI270790v1_alt 206927 306 + 220246 CTAGAGCCTTAGTTCGGAGTTTGGTTAAACTGTTCAGTGAGCTAACTCCAACGTTTACATAGAAAGTACTTTTTCCGTG-AAAacagtgtgatgtaatgac---------------ctaaaagtagagattcagtgacagatcacctggatttccactctaatgctgcctttaatggctgtgtaataa--------------tggccaagttac-ttaacttgt---cACCAAAAGATTATGTATGATTATTTCTGCATTCAGGGGATCTACAGTAATTTATG-TTTTCTAGTTTATG-TTTTATTTTTCTGATTTCTATAATTCCTATAGTGAACAAA----TTT s panTro4.chr4 21595912 306 + 193495092 CTAGAGCCTTAGTTCGGAGTTTGGTTAAACTGTTCAGTGAGCTAACTCCAATGTTTACATAGAAAGTACTTTTTCCGTC-AAAacagtgtgatgtaatgac---------------ctaaaagtagagattcagtgacagatcacctggatttccactctaatgctgcctttaatggctgtgtaataa--------------tggccaagttac-ttaacttgt---cACCAAAAGATTATGTATGATTATTTCTGCATTCAGGGGATCTACAGTAATTTATG-TTTTCTAGTTTATG-TTTTATTTTTCTGATTTCTATAATTCCTATAGTGAACAAA----TTT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21771898 306 + 198332218 CTAGAGCCTTAGTTTGGAGTTTGGTTAAACTGTTCAGTGAGCTAATTCCAATGTCTACATAGAAAGCACTTATTCCGTG-AAAacagtgtgatgtaatgac---------------ctaaaagtagagattcagtgacagatcacctggatttccactctaaggctgcctttaatggctgtgtaataa--------------tggccaagttac-ttaacttgt---cACCAAAAGATTATGTGTGATTATTTCTGCATTCAGGAGATCTATAGTAATTTATG-TTTTCTAGTTTATG-TTTTATTTTTCTGCTTTCTATAATTCCTATAGTGAACAAA----TTT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20380310 306 - 85365473 CTAGAACCTTAGTTCAGAGTTTGGTTAAACTGTTCAGTGAGCTAACTCCAACGTTTACATAGAAAGTACTTTTTCCATG-AAAacagtgtgatgtaatgac---------------ctaaaagtagagattcagtgacagatcacctggatttccactctaatgctgcctttaatggctgtgtaataa--------------tggccaagttac-ttaacttgt---cACCAAAAGATGATGTATGATTATTTCTGCATTCAGGGGATCTATAGTAAtttatg-ttttctagtttatg-ctttatttttctgctttCTATAATTCCTATAGTGAACAAA----TTT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16846588 317 + 184069350 CTAGAGCCTTAGTTTAGAGTTTGGTTAAACTGTTCAGTGAGCTAACTCTAATGTTTACATAGAAAGTACTTTTTCCGTG-Aaaacagtgtgatgtaatgacctaaaagaagagattctaaaagtagagattcagtgacagatcccctggatttccaccct-atgttgcctttaatagctgtgtaataa--------------tgaccaagtt------acttGC---CACCAAAAGATTATGTATGATTATTTCTGCATTCAGGGGATCTATAGTAATTTATA-TTTCCTTGTTTATG-TTTTATTTTTCTGCTTTCTATAATTCCTATAGCGAACAGA--TTTTT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20896351 317 + 189454096 CTAGAGCCTTAGTTTAGAGTTTGGTTAAACTGTTCAGTGAGCTAACTCTAATGTTTACATAGAAAGTACTTTTTCCATG-AAAACAGTGTGATGTAATGACCTAAAAGAAGAGATTCTAAAAGTAGAGATTCAGTGACAGATCCCCTGGATTTCCACCCT-ATGTTGCCTTTAATAGCTGTGTAATAA--------------TGACCAAGTT------ACTTGT---CACCAAAAGATTATGTATGATTATTTCTGCATTCAGGGGATCTATAGTAAtttata-tttccttgtttatg-ttttatttttctgctttCTATAATTCCTATAGCGAACAGA--TTTTT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16486869 320 + 178775436 CTAGAGCCTTAGTTTAGAGTTTGGTTAAACTGTTCAGTGAGCTAACTCCAATGTTTACATAGAAAGTACTTTTTCCGTGAAAAACAGTGTGATGTAATGACCTAAAAGAAGAAATTCTAAAAGTAGAGATTCAGTGACAGATCCCCTGGATTTCCACCCT-ATGTTGCCTTTAATAGCTGTGTAATAA--------------TGACCAAGTT------ACTTGT---CACCAAAAGATTATGTATGATTATTTCTGCATTCAGGGGATCTATAGTAATTTATA-TTTccttgtttatg-ttttatttttctgctttctataATTCCTATAgcgaacagattttttt i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19969597 318 - 48547382 CTAGAGCCTTAGTTTAGAGTTTGGTTAAACTGTTCAGTGAGCTAACTCCAATGTTTACATAGAAAGTACTTTTCCCGTG-AAAACAGTGTGATGTAATGACCTAAAAGGAGAGATTCtaaaagtagagattcagtgacagatcacctggatttgcaccctaatgttgcctttaatagctgtgtaataa--------------tgaccaagtt------acttGT---CACCAAAAGATTATGTATGATTATTTCTGCATTCAGGAGATCTATAGTAATTTATA-TTTCCTTGTTTATG-TTTTATTTTTCTGCTCTCTATAATTCCTATAGTGAACAGA--TTTTT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21330548 307 - 190850796 CTAGAGCCTTAGTCCGGACTCTGGTTAAGCTGTTTAGTGAGCTAACTCCAAAGTTTACATAGAAAGTATTTTTTCAGTG-AAAacagtgtcatgtaatgac---------------ctaaaagttgagattcagtgccagatcacctgaatttctgccctaacaccatcttcaatagctgtgtaacaa--------------tggtcaagtcgc-ttaacttct---cACCAAAAGATTATGCATGATTATTCCTGTATTCAGCGGATCTACAGTAATTTATA-TTTCCTTATTTATG-TTTTATTTTCCTGCTTTCCATAATTCCCATAGGGAACAAA---TTTT i calJac3.chr3 C 0 C 0 s mm10.chr5 49305500 289 + 151834684 CTAGTGTTTGGTTTCAGAAGCTGATTAAACT-TCCAGTGAACAAAGGCCACTGTTCACGCACACAGCACTTTTTCTAAT-AGA--------GTTTAATGAT---------------GTAAAGTTCTAAGTTAAGT------TTATCTCGTTCTATATTCCAACTCCACCTTCCTAGGCTCATGGACAC--------------CAGCCAAGGTAC-TTGGCTTTTATACATCAAAAGATAATGGTTGATTCTTCCTGCATTTTGGGAACTTACAATAATTTACA-TTTAGTTATTTGGG-----ATTTGTCTAGTTCCTCAAATTCCAACAATGAGCA-A----TTC i mm10.chr5 C 0 C 0 s canFam3.chr3 3894875 314 - 91889043 TTGGGGCCTTAATCCAAACTTCTGTTAAACCATTCAGTGAGCTAACTCCAATGTTTATGTCTAAAGTCATTTTTCAGGG-AAGGCGGTATAGTGTGATGAT---------------TTAAAG---------CATGGGTGGAT-GCCTCAGTTTGCATCCTAGCTCCATCTTTAGTAGtagag--ataagcacgtagccttgttggctatgtcactttaaattctctgcaccaaaaccttatgtACAATTATTTCTGCAGTTGGGTGATCCATAGTAATTTATATTTTCCTCCTTTGTGTTTTTGGTTCTCAGTTTTCCAAGATTCTAACAATGAACAAA----CTT i canFam3.chr3 C 0 I 313 a score=3419387.000000 s hg38.chr4_KI270790v1_alt 207233 914 + 220246 TAAAAAAATAAG---AAGAAAGAAACTTCAA----TTGGTGACAAGGTATCAAGTAAAAATGA-ACATTAAATGAAGCACCACCTTAAATGCTACACTTTACAAAGTTCGACTTCAGCTATAATCAACATAGTTTCTA-ATTTTAATCAGTTAATGGAAAGCATAAATCAGCCACTCAATTTTTGCTTATAAGTAATTTCTGGGGGCAAGTATATATCAGAG-----------TTGAAGTTCTTGATCAACTAACTAAAAA-ATCACATAAAAATTCTCCCACCTTCTCATTATCAAACACTATTTGGTTTTCATAATTGCAGTGTTGAGCTCTGACCTACAGATAATGTTCTGATACATCCAATA--ATACT--TTTGCTGCTACATCAATAAAACATGGTTGTAAACTCAGCACTTGCCATTCACATGGCTAACACAATT-ATGCCCGTC-TCCATAATAATACACCAACATAAAATCATCCTCATGGCTACATTAAAGTTAATTTCCTCCAAATTATATGCTGTGTTCATAAGACATGACTGTGCATTTAGACAGTGCTTACCTGTTAAGGGGCTCTGA-ACACTGCCTGTGTGTATGTTCTATTTATGTGTATACATCACTGATGCAAAAAGAGACAG--CCTTTTATTTCAAAGGTATCTATGTTCTGATTTGCACTAAAAACTTAGACTCCTTAAGATCATAAATTTCATATTCAATCATAGTACCATTCTATTGAGCTCATTATTCAGTCTTTCACCAGTACAAACAAGAACTATTTTATGGAAAGCCATTCATTTATTCAATCTACTGCTA-GTGCTAAAGAAAGCTGTAAAAGTAAATCTAAGCCAGCTCTGCA--TTTTGGGATGTCACAG-CTCAACTGGGAAGAGAGGTATGAAAACAATTCCAGTGTAT-GCAGGGCTGTTATAGCCACACTTTAG s panTro4.chr4 21596218 915 + 193495092 TAAAAAAATAAG---AAGAAAGAAACTTCAA----TTGGTGACAAGGTATCAAGTAAAAATGA-ACATTAAATGAAGCACCACATTAAATGCTACACTTTACAAAGTTTGACTTCAGCTATAATCAACATAGTTTCTA-ATTTTAATCAGTTAATGGAAAGCATAAATCAGCTACTCAATTTTTGCTTATAAGTAATTTCTGGGGGCAAGTATATATCAGAG-----------TTGAAGTTCTTGATCAACTAACTAAAAATATCACATAAAAATTCTCCCATCTTCTCATTATCAAACACTATTTGGTTTTCATAATTGCAGTGTTGAGCTCTGACCTACAGATAATGTTCTGATACATCCAATA--ATACT--TTTGCTGCTACATCAATAAAACATGGTTGTAAACTCAGCACTTACCATTCACATGGCTAACACAATT-ATGCCCGTC-TCCATAATAATACACCAACATAAAATCATCCTCATGGCTATATTAAAGTTAATTTCCTCCAAATTATATGCTGTGTTCATAAGACATGCCTGTGCATTTAGACAGTGCTTACCTGTTAAGGGGCTCTGA-ACACTGCCTGTGTGTATGTTCTATTTATGTGTATACATCACTGATGCAAAAAGAGACAG--CCTTTTATTTCAAAGGTATCTATGTTCTGATTTGCACTAAAAACTTAGACTCCTTAAGATCATAAATTTCATATTCAATCATAGTACCATTCTATTGAGCTCATTATTCAGGCTTTCACCAGTACAAACAAGAACTATTTTATGGAAAGCCATTCATTTATTCAATCTACTGCTA-GTGCTAAAGAAAGCTGTAAAAGTAAATCTAAGCCAGCTCTGCA--TTTTGGGATGTCACAG-CTCAACTGGGAAGAGAGGTATGAAAACAATTCCAGTGTAT-GCAGGGCTGTTATAGCCACACTTTAG i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21772204 907 + 198332218 TAAAAACATAAG---AAGAAAGAAACTTCAA----TTGGTGACAAGGTATCAAGTAAAAACGA-ACATTAAATGAAGTACCACCTTAAATGCTACACTTTACAAAGTTGGACTTCAGCTATAATCAACATAGTTTCTA-ATTTTAATCAGTTAATGGAAAGCATAAATCAGCCACTCAAGTTTTGCTTATAAGTAATTTCTGCAGGCAAGTATATATCAGAG-----------TTGAAGTTCTTGATCAACTAACTAAAAATATCACATAAAAATTCT-CGACCTTCTCATTATCAAACACTACTTGGTTTTCATAATTGCAGTGTTGAGCTCTGGCCTACAGATAATGTTCTGATACATCCAATA--ATACT--TTTGCTGCTACATCAATAAAACTTGGTTGTAAACTCAGCACTTACCATTCACACGGCTAACACAATT-ATGCCCATC-TCCATAATAATACACCAACATAAAATCATCCTCATGGCTATATTAAAGTTAATTTCCTCCAAATTATATGCTGTGTTCATAAGACATGACTGTGCATTTAGACAGTGCTTACCTGTTAAGGGGCTCTGA-ACACTGCC----TGTATGTTCTATTTATGTGTATACATCACTGATGCAAAAAGAGACAG--CCTTTTATTTCAAAGGTATCTATGTTCTGATTTGCACTAAAAACTTAGACTCCTTAAGATCATAGATTTCATATTCAATCATAGTACCATTCTATTGAGCTCATTATTCAGTCTTTCACCAGTACAAACAAGAACTATTTTATGGAAAGTCATTCATTTATTCAATCTACTGCTA-GTGCTAAAGAAAGCTGTAAAAGTAAATCTAAGTCAGCTCTGCT--TTTTGGGATGTCCCAG-CTCAACTGGG-AGAGAGGTATGAAAACAATTCCAGTGTAT-GCA-GGCTGTTATAG-CACACTTTAG i ponAbe2.chr4 C 0 I 228 s nomLeu3.chr20 20380616 907 - 85365473 TAAAAAAATAAG-------AAGAAACTTCAA----TTGGTGACAAGGTATCAAGTAAAAACGA-ACATTAAATGAAGCACCACCTCAAATGCTACATTTTACAAAGTTCGACTTCAGCTATAATCAACATAGTTTCTA-ATTTTAATCAGTTAATGGAAAGCATAAATCAGCCACTCAATTTTTGCTTATAAGTAATTTCTGGGGGCAAGTATATATCAGAG-----------TTGAAATTCTTGATC----AACTAAAAATATCATATAAAAATTCTCCCACCTTCTCATTATCAAACACCATTTGGTTTTCATAATTGCAGTGTTGAGCTCTGGCCTACAGATAATGTTCTGATACATCCAATA--ATACT--TTTGCTGCTACATCAATAAAACATGGTTGTAAACTCAGCACTTACCATTCACATGGCTAACACAATT-ATGCCCGTC-TCCATAATAATACACCAACATAAAATCATCCTCATGGCTATATTAAAGTTAATTTCCTCCAAATTATATGCTGTGTTCATAAGACATGACTGTGCATTTAGACAGTGCTTACCTGTTAAGGGGCTCTGA-ACACTGCCTGTGTGTATGTTCTATTTATGTGTATACATCACTGATGCAAAAAGAGACGG--CTTTTTATTTCAAAGGTATCTATGTCCTGATTTGCACTAAAAACTTAGACTCCTTACGATCACAAATTTCATATTCAATCATAGTACCATTCTACTGAGCTCACTATTCAGTCTTTCACCAGTACAAACAAGAACTATTTTATGGAAAGCCATTCATTTACTCAATCTCCTGCTA-GTGCTAAAGAAAGCTGCAAAAGTAAATCTAAGCCAGCTCTGCA--TTTTGGGATGTCACAG-CTCAACTGGGAAGAGAGGTATGAAAACAATTCCAGTGTAT-GCAGGGCTGTTATAGCCACACTTTAG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16846905 921 + 184069350 TTTAAAAAAAAG-------AAGAAACTTCAA----TTGGTGACAAGGTATCAAGTAAAAATGA-ACATTACATGAGGTACCACCTTAAATGCTACACTTTATAAAGTTCTACTTCAGCTATAATCAACATAGTTTCTA-ATTTTAATCAGTTAGCAGAAAGCATAAATCAGCCACTCAATTTTTGCTTATAAGTAATTTCTGGGGGCAAGTATATATCAGAGTTGAAGTTTTATTGAAGTTGTTGATCAACTAACTAAAGATGTCACATAAAAATTCTCCCACCCTCTCATTATCAAACACTATTTGGTTTTCATAATTGCAGTGTTGAGTTCTGGCCTACAGGTAATGTTCTGATACATCCAATA--ATACT--TTTGCTGCTACATCAATAAAACATGGTTGTAAACTCAGCACTTACCATTCACACGGCTAACACAATT-CTGCCCATC-TCCATAATACTACACCAACATAAAGTCATCCTCATGGCCATATTAAAGTTAATTTCCTCCAAATTATATGCGGTGTTCATAAGACATGACTGTGCATTTAGACAGTGCTTATCTGTTAAGGGGCTCTGA-ACACTGCCTGTGTGTATGTTCTATTTATGTGTAAACATCACTGATGCAAAAAGAGACAG--TCATTTATTTCAAAGGTATCTATGTTCTGATTTGCACTAAAAACTTAGACTCCTTAA-ATCATAAATTTCTTGTTCAATCATAGTACCATTCTATTGAGCTCATTATTCAGTCTTTCAGCAGTACAAACAAGAACTATTTTGTGGAAAGTCATTCTTGTATTCAATCTACTGCTA-GTGCTAAAGAAAGCTGTAAAAGTAAATCTAAGCCAGCTCTGCA--TTTTGGGATGTCACAG-CTCAACTGGGAAGAGAGGTATGAAAACAATTCCAGTGTAT-GCAGGGCTGTTATATCCACACTTTAG i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20896668 910 + 189454096 TTTTAAAAAAAG-------AAGAAACTTCAA----TTGGTGACAAGGTATCAAGTAAAAATGA-ACATTACATGAGGTACCACCTTAAATGCTACACTTTATAAAGTTCTACTTCAGCTATAATCAACATAGTTTCTA-ATTTTAATCAGTTAGCAGAAAGCATAAATCAGCCACTCAATTTTTGCTTATAAGTAATTTCTGGGGGCAAGTATATATCAGAG-----------TTGAAGTTGTTGATCAACTAACTAAAGATGTCACATAAAAATTCTCCCACCCTCTCATTATCAAACACTATTTGGTTTTCATAATTGCAGTGTTGAGTTCTGGCCTACAGGTAATGTTCTGATACATCCAATA--ATACT--TTTGCTGCTACATCAATAAAACATGGTTGTAAACTCAGCACTTACCATTCACACGGCTAACACAATT-CTGCCCATC-TCCATAATACTACACCAACATAAAGTCATCCTCATGGCCATATTAAAGTTAATTTCCTCCAAATTATATGCGGTGTTCATAAGACATGACTGTGCATTTAGACAGTGCTTATCTGTTAAGGGGCTCTGA-ACACTGCCTGTGTGTATGTTCTATTTATGTGTAAACATCACTGATGCAAAAAGAGACAG--TCTTTTATTTCAAAGGTATCTATGTTCTGATTTGCACTAAAAACTTAGACTCCTTAA-ATCATAAATTTCTTGTTCAATCATAGTACCATTCTATTGAGCTCATTATTCAGTCTTTCAGCAGTACAAACAAGAACTATTTTGTGGAAAGCCATTCTTGTATTCAATCTACTGCTA-GTGCTAAAGAAAGCTGTAAAAGTAAATCTAAGCCAGCTCTGCA--TTTTGGGATGTCACAG-CTCAACTGGGAAGAGAGGTATGAAAACAATTCCAGTGTAT-GCAGGGCTGTTATATCCACACTTTAG i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16487189 911 + 178775436 ttttaaaaaaag-------aagaaacttcaa----TTGGTGACAAGGTATCAAGTAAAAATGA-ACATTACATGAGGTACCACCTTAAATGCTACACTTTATAAAGTTCGACTTCAGCTATAATCAACatagtttcta-attttaatcagTTAGCAGAAAGCATAAATCAGCCACTCAATTTTTGCTTATAAGTAATTTCTGGGGGCAAGTATATATCAGAG-----------TTGAAGTTGTTGATCAACTAACTAAAGATGTCACATAAAAATTCTCCCACCCTCTCATTATCAAACACTATTTGGTTTTCATAATTGCAGTGTTGAGTTCTGGCCTACAGGTAATGTTCTGATACATCCAATA--ATACT--TTTGCTGCTACATCAATAAAAGATGGTTGTAAACTCAGCACTTACCATTCACATGGCTAACACAATT-CTGCCCATC-TCCATAATACTACACCAACATAAAGTCATCCTCATGGCCATATTAAAGTTAATTTCCTCCAAATTATATGCGGTGTTCATAAGACATGACTGTGCATTTAGACAGTGCTTATCTGTTAAGGGGCTCTGA-ACACCGCCTGTGTGTATGTTCTATTTATGTGTAAACATCACTGATGCAAAAAGAGACAG--TCTTTTATTTCAAAGGTATCTATGTTCTGATTTGCACTAAAAACTTAGACTCCTTAAGATCATAAATTTCTTATTCAATCATAGTACCATTCTATTGAGCTCATTATTCAGTCTTTCAGCAGTACAAACAAGAACTATTTTGTGGAAAGCCATTCTTGTATTCAATCTACTGCTA-GTGCTAAATAAAGCTGTAAAAGTAAATCTAAGCCAGCTCTGCA--TTTTGGGATGTCACAG-CTCAACTGGGAAGAGAGGTATGAAAACAATTCCAGCGTAT-GCAGGGCTGTTATATCCACACTTTAG i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19969915 908 - 48547382 TTTTAAAAAAAG-------AAGAAACTTCAA----TTGGTGACAAGGTATCAAGTAAAAATGA-ACATTACATGAGGTACCACCTTAAATGCTACACTTTATAAAGTTCGACTTCAGCTATAATCAACATAGTTTCTA-ATTTTAATCAGTTAGTAGAAAGCATAAATCAGCCACTCAATTTTTGCTTATAAGTAATTTCTGGGGGCAAGTATATATCAGAG-----------TTGAAGTTCTTGATCAACTAACTAAAAATGTCACATAAAAATTCTCCCACCCTCTCATTATCAAACACTATTTGGTTTTCATAATTGCAGTGTTGAGTTCTGGCCTACAGGTAATGTTCTGATGCATCCAATA--ACACT--TTTGCTGCTACATCAATAAAACATGGTTGTAAACTCAGCACTTACCATTCACACAGCTAACACAATT-CTGCCCATC-CC--TAATACTACACCAACATAAAGTCATCCTCATGGCCATATTAAAGTTAATTTCCTCCAAATTATATGCGGTGTTCATAAGACATGACTGTGCATTTAGACAGTGCTTATCTGTTAAGGGGCTCTGA-ACACTGCCTGTGTGTATGTTCTATTTATGTGTAAACATCACTGATGCAAAAAGAGACAG--CCTTTTATTTCAAAGGTATCTACGTTCTGATTTGCACTAAAAACTTAGACTCCTTAAGATCATAAATTTCTTATTCAATCATAGTACCATTCTACTGAGCTCATTATTCAGTCTTTCACCAGTACAAACAAGAACTATTTTGTGGAAAGCCACTCTTGTATTCAATCTACTGCTA-GTGCTAAAGAAAGCTGTAAAAGTAAATCTAAGCCAGCTCCACA--TTTTGGGATGTCACAG-CTCAACTGGGAAGAGAGGTATGAAAACAATTCCAGTGTAT-GCAGGGCTGTTATATCCACAC-TTGG i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21330855 916 - 190850796 TAAAATAAGAAA---AAGAAAGAAACTTCAA----TTGGTGACAAGGTATCACATTCAAAGGA-ACTTTAAATGAGGCACCACCCTAAATGCTACACTTTACAAAGTTTGATGTCAGCTATAACTGATGTAGTTTCTA-ATTTTAATTAGTTAATGGAAAACATAAATCAACCATTCAATTTTTGCTTATAAGTAATTTCTGGAGGCAAGTATATATCAGAG-----------TTGAAGGTCTTGATCAACTACCTAAAAATATCACATAAGAATTCACCTACCCTCTCATTATCAAACAC--TTTGGTTTTCATCATCGTGGTATTGAGCGCTGGCCTACAGATAATGCTCTGATACATCCAGTA--ATACT--TTTGCTGCTACATCAGTAAAACATGGTTGTAAACTCAGCACTTATCATTCACATGGCCTACACAATT-CTGCCTGTC-TCCATAATAATACACCAACATAAAGTCATCCTCATGGCCATATTAAAGTCAATTTCCTCCAAATTATATGCTGTGTTCATAAGACGTGACTGTGCATTTAGACAGTGCTTATCTCTCAAGGGGCTCTAAGGTACTACTTGGGCGTTTGTTCCATTTATGTGTATACATCATTGATGCAAAGAAAGACAGATTCTTTTATTTCAAAGGTATCTATTTTCTGATTTGCACTAAAAACTTAGAATCCTTAAGATCATAAATTTCATATTCAATCATAGTACCATTCCACTGAGCTCATTATTCAGTCTTTCACTAGTACAAACAAGAACTATTTTACGTAAAGCCATTcatttattcaatctactgcta-gtgctaaagaaagctgtaaaagtaaatctaagccagctctgca--ttttaggatctcacag-cccaactgagaagagaggtatgaaaacaATTCCAGTGTCT-GCAGGGCTGTTATATCCACACTTTGG i calJac3.chr3 C 0 C 0 s mm10.chr5 49305789 848 + 151834684 AAAATCAAAAAGTGTAAGAAAGAGCCTGTAAACTCTGAGAGACAAGTCATCAACAAACCTGGAGACTTTGATTAAGCTATCGTCTTTTCTGTCATGCTTTA-GAAGTTCAATATCATCTGGAATC----------TTA-ATTTAAAACAG-TAATGAAAAACATCAATTAGAAAC--------------TAGGTTATTCCTGTTGACAAGTGCATATTCTAG-----------TC-AAGTTCTTCATTAACAGACTTGGGATGGCATACAAAAGTCCCCATGCCCTCACACCCT--------------TCCCCCTCATTACCTGCTTGAGTTCTTGCCCTCAGATTTCACCTCAATACATCCGCAA--AGAGTTATTCTCTGATATACTAGCAAAGCACAGCTGTAAACTCAGCAATTATTATTCACATAGTCTACATGATTAATTCTTCTC-CTCATAATAATAAACTAATATATAGTCATCTTCATGACCACATTAATGTTAATATCCTCCAGATGACAAGCTATATTCATAAGGCATGAGTCTGCATGCC-ATGGTGCTTATCTCAGAAGAGTTTCAGT-GCGAGGCTCACTTATGT----TATTTATGAGTATATTTCACTGGTGTAAAGGGAGACAGATTCTTTTCTTTCAAAAGTACCCATTTTCTAGTTTGCACTAAAAACTTAAACTCCTTAAGAACATAAATGTCACATTCAATCAAATTACTAACCCACTGACCTCATTATTCTACCTTTCACCAGCATAAAT--GGGCAATTTCATGAAAAGCCATTCATTTATTCACTCTATTGCTAGGTGATGAAGAAAGCTGTAAAAATGACTTTATGT---TTCTACC--TCTTAGGCTTTCATAATCCCAAATGGATAAAGAGCAAGGA----------------------GGCTACAAGAGC---------- i mm10.chr5 C 0 C 0 s canFam3.chr3 3895502 900 - 91889043 -taaaaaaaaga---aaGAAAGAAACTCTAA----GTGGTGACAAGTTGTCCAATAAAAGGGA---------------AGCACCTGTGGTGTTATTCTTTACAAAGTTCAGTGTCAGTTATAATCAACATAGCTTCCATCCTTTAATCAGTTAATAGAAAGCCTAACTTGGCTACTCAGGTTTTGCAAATAA-TAATCTCTG--GGCAAGCACATGTCTGAG-----------CTGAAGTTTTTGTTCAACTAAC--AAAATATCACATAAAAATTTGGCCACTCTCTCATTATCATACACTTTTTGGTTTTCATCACTGCGATGTTAAGCTCCAGCCTACAGATAATGCTCTAACACATCCACTAACACACT--CTTGCTGCCACACCAATAAAGCATGGCTATAAACTCAGCACTTACTATTCACATGGCCTACGCAATT-CTTTCCTTCTTCCATAGTAACAAACCAACATTAAATCACCCTCATGACCATATTAAAGTTAATTTCCTCCAAAGTGCATGTCATATTTATAAGACATGACTCTGCATTTAGACAGTGCTCATCTCGTAAGGTGCTCTAA-GCACTGTC----TATGTGCTTTATTTATGTGAATACATCACTGGTGTAAAAAGAGACAGACTATTTTATTTCAAAGGTATCCATTTTCCGATTTGCACTAAAAACTTAGAGTCCTCAGTACCATAAATGTCATATTCAGTCAAATTATTA-TCCATAGAGCTCATTATTCAGTCTTTTACCAATAAAAACAAGAGATATTTTATGAAAAACCATTCATTTATTCGATCTACTGCTAGGTGCTGAAGAAAGCTGTAAAAATGAATCTATGCCAGCCTTGAAGTTTTTTGGCTTCCACAG-CCCAGTTAGGAAGAGAGATAGGAAAACAATCCCAGTATATCACAGGGTTGTTATAGCCAAGCTTTGG i canFam3.chr3 I 313 C 0 a score=349760.000000 s hg38.chr4_KI270790v1_alt 208147 113 + 220246 GCATGTGAGGCGGG--GGAGATAGGGAAGAAAGAAAATGTGTTCAGGGTAGGCGTTACTAAAAAGAATTTGCAATGAGTTTCAGGAAATGAGTAGG---TTTTTGGCCACTGGGTAGG s panTro4.chr4 21597133 113 + 193495092 GCATGTGAGGCGGG--GGAGATAGGGAAGACAGAAAATGTGTTTGGGGTAGGCGTTACTAAAAAGAATTTGCAATGAGTTTCAGGAAATGAGTAGG---TTTTTGGCCAGTGGGTAGG i panTro4.chr4 C 0 C 0 s nomLeu3.chr20 20381523 113 - 85365473 GCATGTGAGGCGGG--GGAGATAGGGAAGACAGAAAATGTGTTTAGGGTAGGTGTTACTAAAAAGAATTTGCAATGAGTTTCAGGAAATGAGTAGG---TTTTTGGCCAGTGGGTAGG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16847826 113 + 184069350 GCATGTGAGGCGGG--GGAGATAGGGAAGACAGAAAATGTGTTCAGGATAGACGTTACTAAAAAGAGTTTGCAAAGAGTTTCAGGAAATGAGTAGG---TTTTTGGCCAGTGGGTAGG i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20897578 113 + 189454096 GCATGTGAGGCGGG--GGAGATAGGGAAGACAGAAAATGTGTTCAGGATAGACGTTACTAAAAAGAGTTTGCAAAGAGTTTCAGGAAATGAGTAGG---TTTTTGGCCAGTGGGTAGG i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16488100 113 + 178775436 GCATGTGAGGCGGG--GGAGATAGGGAAGACAGAAAATGTGTTCAGGATAGACGTTACTAAAAAGAGTTTGCAATGAGTTTCAGGAAATGAGTAGG---TTTTTGGCCAGTGGGTAGG i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19970823 113 - 48547382 GCATGTGAGGCGGG--GGAGATAGGGAAAACAGAAAATGTGTTCAGGATAGACGTTACTAAAAAGAGTTTGCAATGAGTTTCAGGAAATGAGTAGG---TTTTTGGCCAGTGGGTAGG i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21331771 113 - 190850796 GCATGTGAGGCGGG--GGAGCTAGGAAAGACACAAAATGTGTTCAGGATAGGCATTGCTAAAAAGAGTTTTCGATGAGTTTCAGGAAATGAGTAGG---TTTTTGGCCAGTGGGTAGG i calJac3.chr3 C 0 C 0 s mm10.chr5 49306637 94 + 151834684 ----------------------AAGGAAG--AGAATATATGTCCTGAATATGCATTACTAAAATGAGTTTGTGATTAAATTTAGGAAATGAGTAGGTGTTTTTTTGCCAATATCTAGG i mm10.chr5 C 0 C 0 s canFam3.chr3 3896402 114 - 91889043 GCGTGTGAGTGGGGATGGAGGGAGAGAAGGGA-AGAATGTGTTCAGGGGAGGCATTACTAAAAGGAGTTTGCTGTAAGTTTTAGGAAGTGAGTAGG---TCTTTTGCAAGTGGCTGGG i canFam3.chr3 C 0 C 0 e ponAbe2.chr4 21773111 228 + 198332218 I a score=1715390.000000 s hg38.chr4_KI270790v1_alt 208260 452 + 220246 AGAGAAAACAAGGAAATCCCACATTCTAAAGAGAAACAG---AATACCTGAACAGCA--GAGACATGAATGAGCAAGGAGAGAAAATGACATTGTAAGAAAAATGCTCCCTTTTCCTCAGCCAAAAG---TTTTCTTACTTTCAGTTAGGATATGCAGATTTAATTCAACACGTCATTTGGGCAACCACTAGAA-TTTTCAATTGAGAAGAGAGAAATCACAAGTCAATTCAAATTATAAAAGCAAATTTGGCAAGATCATATGGTTACTGCCGTGCTA--------------GAGGGAGCGGATGGGTATCTGGT------------TCTCTTTGATGTGGCCTGTTACAGCTTTGTGAGTCCTTGCTAAAATGTATTATTGCTGCCATTTTACTGTGCATA-TTACGTTCTGC--TCTTTCCACATCCTATGGTAATATTTTTGTGCCACTCTATGGTTAAACATAATTTTAACTATTGCGACTATAT s panTro4.chr4 21597246 452 + 193495092 AGAGAAGACAAGGAAATTCCACATTCTAAAGAGAAACAG---AATACCTGAACAGCA--GAGACATGAATGAGCAAGGAGAGAAAATGACATTGTAAGAAAAATGCTCCCTTTTCCTCAGCCAAAAG---TTTTCTTACTTTCAGTTAGGATATGCAGATTTAATTCAACACGTCATTTGGGCAAACACTAGAA-TTTTCAATTGAGAAGAGAGAAATCACAAGTCAATTCAAATTATAAAAGCAAATTTGGCAAGATCATATGGTTACTGCCGTGCTA--------------GAGGGAGCGGATGGGCATCTGGT------------TCTCTTTGATGTGGCCTGTTACAGCTTTGTGAGTCCTTGCTAAAATGTATTATTGCTGCCATTTTACTGTGCATA-TTACGTTCTGC--TCTTTCCACATCCTATGGTAATATTTTTGTGCCACTCTATGGTTAAACATAATTTTAACGATTGCGACTATAT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21773339 464 + 198332218 AGAGAAAACAAGGAAATCCCACATTCTAAAGAGAAACAG---AATACCTGAACAGCG--GAGACATGAATGAGCAAGGAGAGAAAATGACATTGTAAGAAAAATGCTCCCTTTTCCTCAGCCAAAAG---TTTTCTTACTTTCAGATAGGATATGCAGATTTAATACAACACGTCATTTGGGCAACCACTAGAA-TTTTCAATTGAGAAGAGAGAAATCACAAGTCAATTCAAATTATAAAAGCAAATTTGGCAAGATCATACGGTTACTGCCATGCTA--------------GAGGGAGTGGATGGGCATCTGGTTCTCTTGCCAGCTCTCTTTGATGTGGCCTGTTACAGCTTTGTGAGTTCTTGCTAAAATGTATTATTGCTGCCATTTTACTGTGCATA-TTACATTCTGC--TCTTTCCACAGCCTATGGTAATATTTTTGTGCCACTCTATGGTTAAACATAATTTTAACTATTGAGACTATAT i ponAbe2.chr4 I 228 C 0 s nomLeu3.chr20 20381636 464 - 85365473 AGAGAAAACAAGGAAATCCCACATTCTAAAGAGAAACAG---AATACCTGAACAGCG--GAGACATGAATGAGCAAGGAGAGAAAATGACATTGTAAGAAAAATGCTCCCTTTtcctcagccaaaag---ttttcttactttcagttagtatatgcagatttaattcaacatgtcatttgggcaaccactagaa-ttCTCAATTGAGAAGAGAGAAATCACAAGTCAATTCAAATTATAAAAGCAAATTTGGCAAGATCATATGGTTACGGCCGTGCTA--------------GAGGGAGCGGATGGGCATCTGGTTCTCTCGCCAGTTCTCTTTGATGTGGCCTGCTACAGCTTTGTGAGTTCTTGCTAAAATGTATTATTGCTGCCATTTTACTGTGCATA-TTACATTCTGC--TCTTTCCATATCCTATGGTAATATCTTTATGCCACTCTATGGTTAAACATAATTTTAACTATTGCGACTATAT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16847939 464 + 184069350 AGAGAAAACAAGGAAATCCCACATTCTAAAGAGAAACAG---AATACCTGAACAACA--GAAGCACGAATGAGCAAGGAGAGAAAATGACATTGTAAGAAAAATACTCCTTTTTCCTCAGCCAAAAG---TTTTGTTACTTTCAGTTAGTATATGCAGATTTAATTCAACACGTCATTTGGGCAACCACTAGAA-TTTTCAATTGAGAAGACAGAAATCACAATTCAATTCGAATTATAAAAGCAAATTTGGCAAGATCATGTGGTTGCTGCCATGCTA--------------GAGGGAGCTGATGGGCATCTGGTTCTCTTGCCAGTTCTCTTCAATGTGGCTTGTTACAGCTTTGTGAGTTCTTGCTAAAATGTATTATTGCTGCCTTTTTACTGTGCATG-CTACAGTCTGC--TCTTTCCACATCCTATGGTAATATTTTTGTGCCATTCTATGGTTAAACATAATTTTAACTATTGTGACTATAT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20897691 464 + 189454096 AGAGAAAACAAGGAAATCCCACATTCTAAAGAGAAACAG---AATACCTGAACAACA--GAAGCACGAATGAGCAAGGAGAGAAAATGACATTGTAAGAAAAATACTCCTTTTTCCTCAGCCAAAAG---TTTTGTTACTTTCAGTTAGTATATGCAGATTTAATTCAACACGTCATTTGGGCAACCACTAGAA-TTTTCAATTGAGAAGACAGAAATCACAATTCAATTCGAATTATAAAAGCAAATTTGGCAAGATCATGTGGTTGCTGCCGTGCTA--------------GAGGGAGCTGATGGGCATCTGGTTCTCTTGCCAGTTCTCTTCAATGTGGCTTGTTACAGCTTTGTGAGTTCTTGCTAAAATGTATTATTGCTGCCTTTTTACTGTGCATG-CTACAGTCTGC--TCTTTCCACATCCTATGGTAATATTTTTGTGCCATTCTATGGTTAAACATAATTTTAACTATTGTGACTATAT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16488213 464 + 178775436 AGAGAAAACAAGGAAATCCCACATTCTAAAGAGAAACAG---AATACCTGAACAACA--GAAGCACGAATGAGCAAGGAGAGAAAATGACATTGTAAGAAAAATACTCCTTTTTCCTCAGCCAAAAG---TTTTGTTACTTTCAGTTAGTATATGCAGATTTAATTCAACACGTCATTTGGGCAACCACTAGAA-TTTTCAATTGAGAAGACAGAAATCACAATTCAATTCgaattataaaagcaaatttgGCAAGATCATGTGGTTGCTGCCGTGCTA--------------GAGGGAGCTGATGGGCATCTGGTTCTCTTGCCAGTTGTCTTCAATGTGGCTTGTTACAGCTTTGTGAGTTCTTGCTAAAATGTATTATTGCTGCCTTTTTACTGTGCATG-CTACAGTCTGC--TCTTTCCACATCCTATGGTAATATTTTTGTGCCATTCTATggttaaacataattttaactaTTGTGACTATAT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19970936 462 - 48547382 AGAGAAAACAAGAAAATCCCACATTCTAAAGAGAAACAG---AATACCTGAACAACA--GAAGCACGAATGAGCAAGGAGAGAAAATGACATTGTAAGAAAAATACTCCTTTTTCCTCAGCCAAAAG---TTTTGTTACTTTCAGTTAGTATATGCAGATTTAATTCAACATGTCATTTGGGCAACCACTAGAA-TTTTCAATTGAGAAGACAGAAATCACAATTCAATTCGAATTATAAAAGCAAATTTGGCAAGATCATGTGGTTGCTGCCATGCTA--------------GAGGGAGCTGATGGGCATCTGGTTCTCTTGCCAGTTCTCTTCGATGTGGTTAGTTACAGCTTTTT--TTTCTTGCGAAAATGTATTATTGCTGCCTTTTTACTGTGCATG-TTACATTCTGC--TCTTTCCACACCCTATGGTAATATTTTTGTGCCATTCTATGGTTAAACATAATTTTAACTATTGTGACTATAT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21331884 463 - 190850796 AGAGAAAACAAGGAAATCCCACATTCTAAAGAGAAACAG---AATACCTGAACAGCA--GAGGCATAAATGAGTACAGAGAGAAAATGGCATTGTAAGAGAAGTACTCCCTTTTCCCCAGCCAAAAG---TTTTCTTACTTCCAGTTAATATATGCAGACTTAATTCAACATATCATTTGGGCAACCACTAGAT-TTTTCAATTGAGAAGAGAGAAATCATAAGTCAATTCAAACTATAAAAGCAAATTCGGCAAGATCGCACGGTTGCAGCCGTGCTG--------------GAAGGCG-TGATGAACTTCTGGTTCTCTTGTCAGTTACTTCCCCTGTGGCTTGTTACAGCTTTGTGAGTTCTTGCTAAAATGTATTGTCATTGCCATTTTACTGTGCATA-CTGCGTTCCAC--TCTTTCCACATCCTGTAGTAATATTTTTGTGCCATTCTGTGGTTAAACACACCTTTAACTATTGTGACTCTAT i calJac3.chr3 C 0 C 0 s mm10.chr5 49306731 453 + 151834684 AAAGAAAACAAG------------------GAGAAACAG-----CTCCTGAACA-----GAAACATGGACAGGCCCGGAGAAGGATGGAAACTTTAAGGCAGGTGTTC---TTTCCCAAGCCAAAAT---CATTTTTATTTTTAGTTAGTGTAAGCAGATTTGTTTCCAT-CACAATTTAGACAACCACTAGGA-TTTCCAGTTGAGAATAGAGAAATCACAAGTCAATTGAAATAATCAAAGCAAATTTGGCAAGGTCTCATGGTTGCTACTGTGCTGTTTCCCTGGCTGTTGTGAGAAGCAGCAAGTATCTGGCTCCCTTGCCAGTTTCTGTGCATGTGGCCTGACGT-GCTCTGTGGAGTCTGACCAAATTGTTCTCTCATGAACACTTTACTTTGCATATTTACATTTTATAGTAGTTTTACATCCTCTGCTAATATATTTGTGCTATGTTATGATTAATCATAACTCTAATGATTATGACTGTAT i mm10.chr5 C 0 I 720 s canFam3.chr3 3896516 474 - 91889043 GGAGAACACAAGGAAGCCTCACATTCTAAGGAAAGAAAGAGCAGTACCTGAGGAGCACTAAATCAGGAATGGGCCCAAAGAGGGAAGGAAATGAT--GACACGTGCTCCCT----CCAGGCCCAAAGTGTTCTTCTTATTTTTAGTtagtatatgcagatctaattccacacaccatttgggcaactgcgagaatttTTCAGTTGGGAGGAGAGAAATCACAAGTCAATTCAAATTATAAAAGCAAATTTGGCAAGACCGCATGGTTGCTGCCGTGCTGTTTCTCTGACTA--GAGAGAACGGATGGACTTCTGGCTCCCTTGCCACTTGCTCCCCGTGAAGCCTGTTACA--TTTGAGAAATCTTGCTAA--TGCGTCAGTGTTGCCAATTTACTGCGCACA-TTACATTTTA---TATTTCCGCACACCATGGTAATATTTTCGTGCCACTCTATGATTAAACATAATTTTAAGTAGTGTGACTAGAT i canFam3.chr3 C 0 C 0 a score=368521.000000 s hg38.chr4_KI270790v1_alt 208712 121 + 220246 ATGCATTGGCAATTCAGTATGTGTAACCTTCAAGGGAAT-AGTTTTAAAAAGATTCTCCGTGTTAACAACATGGTAAGGAAAGTGAGGTCTTCAGACAAaaacaaacaaacaaaaaa----caGAA s panTro4.chr4 21597698 121 + 193495092 ATGCATTGGCAATTCAGTATGTGTAACCTTCAAGGGAAT-CGTTTTAAAAAGATTCTCGGTGTTAACAACATGGTAAGGAAAGTGAGGTCTTCAGACAAAAACAAACAAACAAAAAA----CAGAA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21773803 121 + 198332218 ATGCATTGGCAATTCAGTATGTGTAACCTTCAAGGGAAT-AGTTTTAAAAAGATTCTCGGTATTAACAACATGGTAAGGAAAGTGAGGTCTTCAGACAAAAACAAACAAACAGAAAA----CAGAA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20382100 121 - 85365473 ATGCACTGGCAATTCAGTATGTGTAACCTTCAAGAGAAT-AGTTTTAAAAAGATTCTCGTTGTTAACAACATGGTAAGGAAAGTGAGGTCTTcaaacaaaaacaaacaaacaaaaaa----caGAA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16848403 125 + 184069350 ATGCATTGGCAATTCACTATGTATAACCTTCAAGGGAAT-AGTTTTACAAAGATTTCCGATGTTAACAACATGGTAAGGAAAGTGAGGTCTTCAGACAAAAACAAACAAACAAACAAAAAACAGAA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20898155 125 + 189454096 ATGCATTGGCAATTCACTATGTATAACCTTCAAGGGAAT-AGTTTTACAAAGATTTCCGATGTTAACAACATGGTAAGGAAAGTGAGGTCTTCAGACAAAAACAAACAAACAAAAAAAACCCAGAA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16488677 123 + 178775436 ATGCATTGGCAATTCACTATGTATAACCTTCAAGGGAAT-AGTTTTACAAAGATTTCCGATGTTAACAACATGGTAAGGAAAGTGAGGTcttcagacaaaaataaacaaacaaaaaaaa--cagaa i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19971398 120 - 48547382 ATGCATTGGCAATTCACTATGTATAACCTTCAAGGGAAT-AGTTTTACAAAGATTTCTGATGTTAACAACATGGTAAGGAAAGTGAGGTCTTCAGACAAAAACAAACAAA-----AAAAACCAGAA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21332347 119 - 190850796 ATGCACTGGCAATTCAGTATGTGCAACAGTCAAGAGAAT-AGTCATTAAAAGATTCCCAGTGTTAAAAATATGATAAGGAAAGCGATGTCTTCAGACAAAACAAAACAA------AAAACCCGGAA i calJac3.chr3 C 0 C 0 s canFam3.chr3 3896990 120 - 91889043 ATACGTTGGCAG-GCAATATGTCTAGTGTTCAAGACAGTAAGCTGTTAAAGGATTCCTAGTGTTAGCAACACGGTAAAGAAAGTAGCATCTTCAGATGGAAAaaaacaaa-acaaaa----caaaa i canFam3.chr3 C 0 I 54 e mm10.chr5 49307184 720 + 151834684 I a score=42496.000000 s hg38.chr4_KI270790v1_alt 208833 13 + 220246 GTTCCATAAGGAT s panTro4.chr4 21597819 13 + 193495092 GTTCCATAAGGAT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21773924 13 + 198332218 GTTCCATAAGGAT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20382221 13 - 85365473 GTTCCATAAGGAT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16848528 13 + 184069350 GATCCATAAGGAT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20898280 13 + 189454096 GTTCCATAAGGAT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16488800 13 + 178775436 gttcCATAAGGAT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19971518 13 - 48547382 GTTCCATAAGGAT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21332466 13 - 190850796 GTTCCATAAGGAT i calJac3.chr3 C 0 C 0 e mm10.chr5 49307184 720 + 151834684 I e canFam3.chr3 3897110 54 - 91889043 I a score=118233.000000 s hg38.chr4_KI270790v1_alt 208846 38 + 220246 TCTCACTG----TCTATCTACCTAGACATTTGTTTTACATAT s panTro4.chr4 21597832 42 + 193495092 TCTCACCGTCTATCTATCTACCTAGACATTTGTTTTACATAT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21773937 42 + 198332218 TCTCACTGTCTATCTATCTACCTAGACATTTGGTTTACATGT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20382234 38 - 85365473 TCTCACTG----TCTATCTACCTAGACATTTGTTTTACATAT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16848541 42 + 184069350 TCTCACTGTCTAGCTATTTACCTAGATATTTGTTTTACATAT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20898293 42 + 189454096 TCTCACTGTCTAGCTATTTACCTAGATATTTGTTTTACATAT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16488813 42 + 178775436 TCTCACTGTCTAGCTATTTACCTAgatatttgttttacatat i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19971531 42 - 48547382 TCTCACTGTCTAGCTATTTACCTAGATATTTGTTTTACACAT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21332479 38 - 190850796 TCTCATTA----TCTATCTACCCAGATAATTGTTTTACATAT i calJac3.chr3 C 0 C 0 s canFam3.chr3 3897164 38 - 91889043 ----tctacctatctaCTTGCCTACATATTTCTTTTTCACAT i canFam3.chr3 I 54 C 0 e mm10.chr5 49307184 720 + 151834684 I a score=924184.000000 s hg38.chr4_KI270790v1_alt 208884 269 + 220246 ATTTCTACAGAATAAAATTTAACAATATAGAAAGATCTAATGGGTCTATGAAAAGATTTGCTGCCACTGTCCCCAATCCTATTCATTTTCTC--CAAGATATGATTTCACATAGATGATATA------AGTTCTTCGGGCATGTGGACTCAGATTTCACTTACTAAAAACAAAACA---ACAG----TAAAATAAAATCTG------TGATGCTGCTAAAATTCATATATtt-cccaaatttgaagaccctcctttgagtggacagggtccccaggacccatattagaaaa s panTro4.chr4 21597874 269 + 193495092 ATTTCTACAGAATAAAATTTAACAATATAGAAAGATCTAATGGGTCAATGAAAAGATTTGCTGCCACTGTCCCCAATCCTATTCATTTTCTC--CAAGATATGATTTCACATAGATGATATA------AGTTCTTCGGGCATGTGGACTCAGATTTCACTTACTAAAAACAAAACA---ACAG----TAAAATAAAATTTG------TGATGCTGCTAAAATTCATATATtt-cccaaatttgaagaccctcctttgagtggacagggtccccaggacccatattagaaaa i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21773979 269 + 198332218 ATTTCTACAGAATAAAATTTAACAATATAGAAAGATCTAATGGGTCTATGAAAAGATTTGCTGCCACTGTCCCCAATCCTATTCATTTTCTC--CAAGATATGATTTCACATAGATGATATA------AGTTCTTCAGGCATGTGGACTCAGATTTCACTTACTAAAAACAAAATA---ACAA----TAAAATAAAATTTG------TGATGTTGCTAAAATTCATATATtt-cccaaatttgaagaccctcctttgagtggacagggtccccaggacccatattagaaaa i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20382272 272 - 85365473 ATTTCTACAGAATAAAATTTAACAATATAGAAAGATCTAATGGGTCTATGAAAAGATTTGCTGCCACTGTCCCCAGTCCTATTCATTTTCTC--CAACATATGATTTCACATAGATGGCATA------AGTTCTTGAGGCATGTGGACTCAGATTTCACTTACTAaaaacaaaataactacaa----taaaataaaatTTG------TGATGCTGCTAAAATTCATATATtt-cccaaatttgaagaccctcctttgagtcaacagggtccccaggacccatattagaaaa i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16848583 273 + 184069350 ATTTCTATAGAATAAAATTTAACAATATGGAAAGGCCTAAGGGATCTATGAAAAGATTTGTTGTCACTGTCCCCAATCCTATTCATTTTCTC--CAAGACATGATTTCACATAGATGGTATA------AGTTCTTCAGGCATGTGGACTCAGATTTCACTTACTAAAAACAAAACA---ACAACAATTAAAGTAAAATTTG------TGATGCTGCTACAGGTCATTTATtt-cccaaatttgaagaccctcctttgaattgacagggtccccaggacccatatgagaaaa i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20898335 273 + 189454096 ATTTCTATAGAATAAAATTTAACAATATGGAAAGGCCTAAGGGATCTATGAAAAGATTTGTTGTCACTGTCCCCAATCCTATTCATTTTCTC--CAAGACATGATTTCACATAGATGGTATA------AGTTCTTCAGGCATGTGGACTCAGATTTCACTTACTAAAAACAAAACA---ACAACAATTAAAGTAAAATTTG------TGATGCTGCTAAAGGTCATTTATTT-CCCAAATTTGAAGACCCTCCTTTGAATTGACAGGGTCCCCAGGACCCATATGATAAAA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16488855 273 + 178775436 atttctatagaataaaatttaacaatataGAAAGGCCTAAGGGATCTATGAAAAGATTTGTTGTCACTGTCCCCAATCCTATTCATTTTCTC--CAAGACATGATTTCACATCGATGGTATA------AGTTCTTCAGGCATGTGGACTCAGATTTCacttactaaaaacaaaaca---acaacaattaaagtaaaatttg------tgATGCTGCTAAAAGTCatttattt-cccaaatttgaaGACCCTCCTTTGAATTGACAGGGTCCCCAGGACCCATATGAGAAAA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19971573 273 - 48547382 ATTTCTATAGAATAAAATTTAACAATATAGAAAGGCCTAAGGGATCTATGAAAAGATTTGTTGTCACTGTCCCCAATCCTATTCATTTTCTC--CAAGACATGATTTCACATAGATGGTATA------AGTTCTTCAGGCATGTGGACTCAGATTTCGCTTACTAAAAACAAAACA---ACAACAATTAAAGTAAAATTTG------TGATGCTGCTAAAAGTCATTTATTT-CCCAAATTTGAAGACCCTCCTTTGAATTGACAGGGTCCCCAGGACCCGTATGAGAAAA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21332517 271 - 190850796 ATTTCTGtataataaaatttaataatataGAAAGATCTAACGGATCGATAAAAAGATTTGCTGCTACTGTCCCCAATCCCATTCATTTTCTC--TAAGACATGATTTCACATGGATGGTATA------AGCTCTTCCGGCATGTAGACTCAGATTTCAACTACTAAAAACAAAATA---ACAACAA-TAAAATAAAATTTG------TGATGCTGCTAAAATTCATTTAGTT-CCCAAATTTGAAGACCCTCCTTTGGGTTGACAGGGTCCCCA-GACCTGTATTAGAAAA i calJac3.chr3 C 0 C 0 s mm10.chr5 49307904 240 + 151834684 ATTTCTATACAATAAAACTCATTAGTGTAAAACGACATAATGGGCTGTT------ATTTACT----TTAGACCCTGTTCCATTTATTTTTTTTGTAAAACGTGATTTCACTCAGATTATGTGTTTCTTAGTTCTTCAGACATCTTGGCACAGATTTCACTT-------------TA---AAAG-----AAAATAAAATT-----------TGCTGCTAAAATTTA--------CAACAATCTGAA-ACATTCCTCTGAAGAGACAGGACCCCCAGGACTTAAATTAGAGAA i mm10.chr5 I 720 C 0 s canFam3.chr3 3897202 240 - 91889043 -ATTTAATATAATAAAAGCAAACAATATAGAAAAACCTAATGGGTC---------ACTTGCTGCCTACACCCCCAATCCCATTTATTTTCCA--TGGGACATGATTTCACATTGATGGTGCA-------------------TGTTGACTCA-AGCCCACTTATTAAAAAACAAACG---ACAA----TA---TATATTTTTTCTATCTGGTGATGTTAAAATTCATGTTTTTCCCCAAATCTAAAGAAATTCCTTTGAGTTGACAGGCTC---------TATAACAGGGAA i canFam3.chr3 C 0 C 0 a score=553606.000000 s hg38.chr4_KI270790v1_alt 209153 174 + 220246 gaagagctttt-------agagaatattttgctaatattcactgctgcttctcc--------tttttt-tgtgtgcagcaac----ctcacttctgatgagcttttaaacccatagccagctaaatcACATGTTAGGCCTTCACCTAGTATATTTACCCATCATCTCTTTCCAGTAATGTACAGCTTGCCTAAA s panTro4.chr4 21598143 174 + 193495092 gaagagctttt-------agagaatattttgctaatattcactgctgcttctcc--------tttttt-tgtgtgcagcaac----ctcacttctgataagcttttaaacccatagccagctaaatcACATGTTAGGCCTTCACCTAGTATATTTACCCATCATCTCTTTCCAGTAATGTACAGCTTGCCTAAA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21774248 175 + 198332218 gaagagctttt-------agagaatattttgctaatattcactgctgcttctcc--------ttttttgtgtgtgcagtaac----ctcacttctgataagcttttaaacccatagtcagctaaatcACATGTTAGGCCTTCACCTAGTATATTTACCCATCATCTCTTTCCAGTAATGTATAGCTTGCCTAAA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20382544 173 - 85365473 gaagagctttt-------aaagaatattttgctaatattcactgctgcttctcc--------ttttttgtgtgtgcagtaac----ctcacttctgataagcttttaaacccatagctagctaaatcac--gttaggccttcacctagtatatttacccatcatctctttccagtaatgtatagcttgcctaaa i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16848856 172 + 184069350 gaagagctttt-------ggagaatattttgctaatattcactgctgcttctcc--------tttttc---ggtgcagtaaa----ctcacttctgataaacgtttgaatccatagctagctaaatcACATGTTAGGCCTTCACCTAGTATATTTACCCATCATCTATTTTCAGTAATGTATAGTTTACCTAAA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20898608 172 + 189454096 GAAGAGCTTTT-------GGAGAATATTTTGCTAATATTCACtgctgcttctcc--------tttttc---tgtgcagtaaa----ctcacttctgataaacttttgaatccatagctagctaaatcACATGTTAGGCCTTCACCTAGTATATTTACCCATCATCTATTTTCAGTAATGTATAGTTTACCTAAA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16489128 172 + 178775436 GAAGAGCTTTT-------GGAGAATATTTTGCTAATATTCACTGCTGCTTCTCC--------TTTTTC---TGTGCAGTAAA----CTCACTTCTGATAAACTTTTGAATCCATAGCTAGCTAAATCACATGTTAGGCCTTCACCTAGTATATTTACCCATCATCTATTTTCAGTAATGTATAGTTTACCTAAA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19971846 180 - 48547382 GAAGAGCTTTT-------GGAGAATATTTTGCTAATATTCACTGCTGCTTCTCCTTTTTTTTTTTTTT---TGTGCAGTAAA----CTCACTTCTGATAAGCTTTAGAATCCATAGCTAGCTAAATCACATGTTAGGCCCTCACCTAGTATATTTACCCATTATCTATTTCCAGTAATGTATAGCTTACCTAAA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21332788 170 - 190850796 GAAGAGCTCTT-------AAAATATATTTTGCTAATATTCACTGCTGCTTCTCC--------CTTTTT---TGTGCAGTAAC----CTCACTTCTCATAAGCATTTGAACCCGTAACTAGCTAAATCA--TGTTAGGCCTTCACTCAGTATATTTACCCATCATCTCTTTCCAGTAATGTATACCTTGCCTAAA i calJac3.chr3 C 0 C 0 s canFam3.chr3 3897442 176 - 91889043 CAAGGGACACTAAAAAAAAAAAAAAATTGTGCTAATGCTCACTGCTGCTTCTCC--------TTTTCT----GCATAGTAAAAGAGATAACTTCTCTCAAGTTTGTAAACGCATGGCTAGCTAAATCATATGCCAGGCTTTTACCTGG---ATTT---CTTTTTCTCTTTCTAGTAATGTATAACCTACCTGAA i canFam3.chr3 C 0 C 0 e mm10.chr5 49308144 0 + 151834684 C a score=3589262.000000 s hg38.chr4_KI270790v1_alt 209327 1040 + 220246 ATGATGTAAAGAAGAAATATTGAGTTCAGTATGGCTAGTGGAGACGTGGTTTGTAGGAAAACATAGGAGACAAGGTTAAA---------AAAGCACAAAGAACTCACAACAAATGGCTCAGAAAAAGAAAGTTTGGTGTC---ACATGGGAGCTCAGTCATACATG-GTTAAGGAATTAATACACGTAAATTCCTAGCCATACACATACACATAATCTATCCTCAAAGG-TATGTGCAAGG--CTCT--TCCTAGCCT-------TTAGATCAACTCAAAAAGGAGAAACTTTGATATAATAAATTTCTCAGGG--ATTATCTGGTTGTGATCTATTTAATACAAATGAGTCTGGACTATGAAAAACACAGT-TTTCCTTGAGTTTAGATT-TTTAGGGCCTTC---TCTCTGT-AGGGCATTAAGGCCTCACAGGGTCATGATCATTTTATAATCTTTAGGAAAAGAGCCAAGCACATTCCTCAGCCAATTTTAT----ATGCAGGCCTTATAGCAGAGG-GGGAGGAGCAATTCTACAACTTGCAGAAGACTCAGGGAAGATTGTCAGGATGGGAGAATGCCATATGAGTTGGAGAGAAGGCTCCAAGCAGGTCCTGAATCAGAATAGAACCTACATGAATGATGGTACATGGTCAAGGATTTGCAGATTTGGATTTGTACATCTCTATCTCTTTTATCAAACACAACTGGTCAAACTATCACAGAGCATAGAC--AATG--AGGTGTCTAAGAAA-GATCCC-Tgagagccaatgaggtacag-actaagagaatgggttttgaagtcatgtaaacaaaagtctgaactccagctttccaatttactagttattcacccacaaaatattttcttggcctctctgagtctcaAAGCCATCTATATAACCCTAAAATATTGTGGGAAAAAAGTTACAAATAATACAAGTGAGATATTTGGCATGTGTTTGACATTCAACATGTATGAACTATTATTACA---------TGAACATCATCTAGGAATGTAAGTGAGTTACAAC-----AC----TAAAGTGCAATATTTCTGCATGTTGCTTGCGGAGCAATTCATCACTTTG s panTro4.chr4 21598317 1040 + 193495092 ATGATGTAAAGAAGAAATATTGAGTTCAGTATGGCTAGGGGAGACGTGGTTTGTAGGAAAACATAGGAGACAAGGTTAAA---------AAAGCACAAAGAACTCACAACAAATGGCTCAGAAAAAGAAAGTTTGGTGTC---ATATGGGAGCTCAGTCATACATG-GTTAAGGAATTAATACACGTAAATTCCTAGCCATACACATACACATAATCTATCCTCAAAGG-TATGTGCAAGG--CTCT--TCCTAGCCT-------TTACATCAACTCAAAAACGAGAAACTTTGATATAATAAATTTCTCAGGG--ATTATCTGGTTGTGATCTATTTAATATAAATGAGTCTGGACTATGAAAAACACAGT-TTTCCTTGAGTTTAGATT-TTTAGGGCCTTC---TCTCTGT-AGGGCATTAAGGCCTCACAGGGTCATGATCATTTTATAATCTTTAGGAAAAGAGCCAAGGACATTCCTCAGCCAATTTTAT----ATGCAGGTCTTATAGCAGAGG-GGGAGGAGCAATTCTACAACTTGCAGAAGACTCAGGGAAGATTGTCAGGATGGGAGAATGCCATATGAGTTGGAGAGAAGGCTCCAAGCAGGTCCTGAATCAGAATAGAACCTACATGAATGATGGTACATGGTCAAGGATTTGCGGATTTGGATTTGTACATCTCTATCTCTTTTATCAAACACAACTGGTCAGACTATCACAGAGCATAGAC--AATG--AGGTGTCTAAGAAA-GATCCC-Tgagagccaatgaggtacag-actaagagaatgggttttgaagtcatgtaaacaaaagtctgaactccagctttccaatttactagttattcacccacaaaatattttcttggcctctctgagtctcaaagtcatctatataaCCCTAAAATATTGTGGGAAAAAAGTTACAAATAATACAAGTGAGATATTTGGCATGTGTTTGACATTCAACATGTATGAACTATTATTACA---------TGAACATCATCTAGGAATGTAAGTGAGTTATAAC-----AC----TATAGTGCAATATTTCTGCATGTTGCTTGCGGAGCAATTCATCACTTTG i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21774423 1036 + 198332218 ATAATGTAAAGAAGAAATATTGAGTTCAGTATGGCTAGTGGAGATGTGGTTTGTAGGAAAACATAGGAGACAAGGTTAAA---------AAAGCACAAAGAACTCACAACAAATGGCTCAGAAAAAGAAAGTTTGGTGTC---ATATGGGAGCTCAGTCATACATG-GTTAAAGAATTAATACACGTAAATTCCTAGCCATACACATACACATAGTCTATACTCGAAGG-TATGTGCAAGG--CTTT--TCCTAGCCT-------TTAGATCAACTCAAAAAGGAGAAACTTTGATATAATAAATTTCTCACGG--ATTATCTGGTTGTGATCTATTTAATATAAATGAGTCCGGACTATGAAAAACACAGT-TTTCCTTGAGTTTAGATT-TTTAGGGCCTTC---TCTCTGT-AGGGCATTAAGGCCTCACAGGGTCATGATCATTTTATAATCTTTAGGAAAAGAGCCAAGGACATTCCTCAGCCAATTTTAT----ATGCAGGTCTTACAGCAGAGG-GGTAGGAGCAATTCTACAACTTGCAGAAGACTCAGGGAAGATTGTCAGGATGGGAGAATGCCATATGAGTTGGAGAGAAGGCTCCAAGCAGGTCCTGAATCGGAATAGAACCTACATGAATGATGGTACATGGTCAAGGATTTGCAGATTTGGATTTGTACATCTCTATCTCTTTTATCAAACACAACTGGTCAAACTATCACAGAGCATAGAC--AATG--AGGTGTCTAAGAAA-GATCCC-Tgagagccaatgaggtacag-agtaagagaatgggttttaaagtcatgtaaacaaaagtctgaactctggctttccaatttactagttattcacccacaaaatattttcttggcctctctcagtctcaaagtcatctatataaCCCTAAAATATTGTGGGAAAAAAGTTACAAATAATACAAGTGAGATATTTGGCATATGTTTGACATTAAACATGTATGAACTATTATTACA---------TGAACATCATCTAGGAAT----GTGAGTTATAAC-----AC----TAAAGTGCAATATTTCTGCATGTTGCTTGTGGAGCAATTCATCACTTTG i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20382717 1038 - 85365473 atgatgtaAAGAAGAAATACTGAGTTCAGTATGGCTAGTGGAGAAGTGGTTTGTAGGAAaacataagagacaaggttaaa---------aaagcacaaagaactcacaacaaatggcaaagaaaaagaaAGTTTGGTGTC---ATATGAGAGCTCA-TCATACATG-GTTAAAGAATTAATACATGTAAATTCCTATCCATACACATACACATAGTCTATCCTCGAAGG-TATGTGCAAGG--CTCT--TCCTAGCCT-------TTAGATCAACTCAAAAATGAGAAACTTTGATATAATAAATTTCTCAGGG--ATTATCTGGTTGTGATCTATTTAATATAAATGAGTCTGGACTATGAAAAACACAGT-TTTCCTTGAGTTCAGATT-TTTAGGGCCTTC---TCTCTGT-AGGGCATTAAGGCCTCACAGGGTCATGATCATTTTTTAATCTTTAGGAAAAGAGCCAAGGACATTCCTCAGCCAATTTTAT----ATGCAGGTCTTATAGCAGAGG-GGGAGGAGCAACGCTACAACTTGCAGAAGACTCAGGGAAGATTGTCAGGATGGGAGAATGCCATATGAGTTGGAGAGAAGGCTCCAAGCAGGTCCTGAATCAGAATAGAACCTACATGAATGATGGTACATGGTCAAGGATTTGCAGATTTGGATTTGTACATCTCTATCTCCTTGATCAAACACAACTGGTCAAACTATCACAGAGCATAGAC--AATG--AGGTGTCTAACAAA-GATCCC-Tgagagccaatgaggtacag-agtaagagaatgggttttgaggtcatgtaaacaaaagtctgaactccagatttccaatttactagttattcacccacaaaatattttcttggcctctctcagtctcaaagtcatctatataaCCCTAAAATATTGTGGGAAAAAAGTTACAAATAATACAAGTGAGATATTTGGCATATGTTTGACATTCAACATGTATGAACTACTATTACA---------TGAACATCATCTAGGAATGTAAGTGAGCTTTAAC-----AC----TAAAGTGCAATATTTCTGC-CGTTGCTTGTGGAGCAATTCATCACTTTG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16849028 1038 + 184069350 ATGATGTATAGAAGAAATATTGAGTTCTGCATGGCTAGTGGAGAAGTGGTTTGCAGGAAAACATGGGAGACAAGGTTAAA---------AAAGCACAAAGAACTCACAACAAATGGCTCAGAAAAAGAAAGTTTGGTGTC---ATATGGGAGCACAGTCATACATG-GTTAAAGAATTAATACATGTAAATTCCTAGCCATACACATACACATAGTCTATCCTCTAAGG-TATGTGCAAGG--CTCT--TCCTAGCCT-------TTACATCAACTCAAAAAGGAGAAACTTTGATATAATAAATTTCTCAGGG--ATTATCTGGTTGTGATCTATTTAATATAAATGAGTCTGGACTATGAAAAACACAGT-TTTCCTTGAGTTTAGATT-TTTAGGGCCTTC---TCTCTGT-AGGGCATTAAGGCCTCATGGGGTCATGATCATTTTATAACCTTTAGGAAAAGAGCCAAGGACATTCCTCAACCAATTTTAT----GTGCAGGTCTTATAGCAAAGGCGGGGGGAGCAATGCTACAACAT---GAAGAATCAGGGAAGATTGTCAGGATGGGAGAATGCCATATGAGTTGGAGAAAAGGCTCCAAGCAGGTCCTGAATCAGAATAGAACCTACACGAATGAGGGTACATGGTCAAAGATTTGCAGATTTGGATCTGTACATCTCTATCTCTTTGATCAAACACAACTGGTCAAACTATCACAGAGCACAGAT--AATG--AGGTGCCTAAGAAA-GACCCC-Tgagagccaatgaggtacag-agtaagagaatgggttttgaagtcatgtaaacaaaagtctgagctctggctttccaatttactagttattcacccacaaaatattttcttggcctctctcagtctcaaagtcatctatataaCCCTAAAATATTGTGGGAAAAAAGTTATAAATAATACAAGTGAGATATTTGGCATATGTTTGACATTCAACATGTATGAACTATTATTACA---------TGAACAGCATCTAGAAATGTAAGTGAGTTATAAC-----CC----TAAAGTGCAATATTTCTGCATGGTGCTTCTGGAGCAATTCGTCACTTTG i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20898780 1038 + 189454096 ATGATGTATAGAAGAAATATTGAGTTCTGCATGGCTAGTGGAGAAGTGGTTTGCAGGAAAACATAGGAGACAAGGTTAAA---------AAAGCACAAAGAACTCACAACAAATGGCTCAGAAAAAGAAAGTTTGGTGTC---ATATGGGAGCACAGTCATACATG-GTTAAAGAATTAATACATGTAAATTCCTAGCCATACACATACACATAGTCTATCCTCTAAGG-TATGTGCAAGG--CTCT--TCCTAGCCT-------TTACATCAACTCAAAAAGGAGAAACTTTGATATAATAAATTTCTCAGGG--ATTATCTGGTTGTGATCTATTTAATATAAATGAGTCTGGACTATGAAAAACACAGT-TTTCCTTGAGTTTAGATT-TTTAGGGCCTTC---TCTCTGT-AGGGCATTAAGGCCTCATGGGGTCATGATCATTTTATAACCTTTAGGAAAAGAGCCAAGGACATTCCTCAACCAATTTTAT----GTGCAGGTCTTATAGCAAAGGCGGGGGGAGCAATGCTACAACAT---GAAGAATCAGGGAAGATTGTCAGGATGGGAGAATGCCATATGAGTTGGAGAAAAGGCTCCAAGCAGGTCCTGAATCAGAATAGAACCTACACGAATGAGGGTACATGGTCAAAGATTTGCAGATTTGGATCTGTACATCTCTATCTCTTTGATCAAACACAACTGGTCAAACTATCACAGAGCACAGAT--AATG--AGGTGCCTAAGAAA-GACCCC-Tgagagccaatgaggtacag-agtaagagaatgggttttgaagtcatgtaaacaaaagtctgagctctggctttccaatttactagttattcacccacaaaatattttcttggcctctctcagtctcaaagtcatctatataaCCCTAAAATATTGTGGGAAAAAAGTTATAAATAATACAAGTGAGATATTTGGCATATGTTTGACATTCAACATGTATGAACTATTATTACA---------TGAACAGCATCTAGAAATGTAAGTGAGTTATAAC-----CC----TAAAGTGCAATATTTCTGCATGGTGCTTCTGGAGCAATTCGTCACTTTG i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16489300 1038 + 178775436 ATGATGTATAGAAGAAATACTGAGTTCTGCATGGCTAGTGGAGAAGTGGTTTGCAGGAAAACATAGGAGACAAGGTTAAA---------AAAGCACAAAGAACTCACAACAAATggctcagaaaaagaaagtttggTGTC---ATATGGGAGCACAGTCATACATG-GTTAAAGAATTAATACATGCAAATTCCTagccatacacatacacatagtcTATCCTCTAAGG-TATGTGCAAGG--CTCT--TCCTAGCCT-------TTACATCAACTCAAAAAGGAGAAACTTTGATATAATAAATTTCTCAGGG--ATTATCTGGTTGTGATCTATTTAATATAAATGAGTCTGGACTATGAAAAACACAGT-TTTCCTTGAGTTTAGATT-TTTAGGGCCTTC---TCTCTGT-AGGGCATTAAGGCCTCATGGGGTCATGATCATTTTATAATCTTTAGGAAAAGAGCCAAGGACATTCCTCAACCAATTTTAT----ATGCAGGTCTTATAGCAAAGGCGGGGGGAGCAATGCTACAACAT---GAAGAATCAGGGAAGATTGTCAGGATGGGAGAATGCCATATGAGTTGGAGAAAAGGCTCCAAGCAGGTCCTGAATCAGAATAGAACCTACACGAATGAGGGTACATGGTCAAAGATTTGCAGATTTGGATCTGTACATCTCTATCTCTTTGATCAAACACAACTGGTCAAACTATCACAGAGCACAGAT--AATG--AGGTGCCTAAGAAA-GACCCC-TGAGAGCCAATGAGGTACAG-AGTAAGAGAATGGGTTTTGAAGTCATGTAAACAAAAGTCTGAGCTCTGGCTTTCCAATTTACTAGTTATTCAcccacaaaatattttcttggccTCTCTCAGACTCAAAGTCATCTATATAACCCTAAAATATTGTgggaaaaaagttacaaataatACAAGTGAGATATTTGGCATATGTTTGACATTCAACATGTATGAACTATTATTACA---------TGAACAGCATCTAGAAATGTAAGTGAGTTATAAC-----CC----TAAAGTGCAATATTTCTGCATGGTGCTTCTGGAGCAATTCATCACTTTG i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19972026 1034 - 48547382 ATGATGTAAAGAAGAAATATTGAGTTCTGCATGGCTAGTGGAGAAGTGGTTTGTAGGAAAACATAGGAGACAAGGTTAAA---------AAAGCACAAAGAACTTACAACAAATGGCTCAGAAAAAGAAAGTTTGGTGTC---ATATGGGAGCTCAGTCATACATG-GTTAAAGAATTAATACATGTAAATTCCTAGCCATACACATACACATAGTCTATCCTCTAACA-TATGTGCAAGG--CTCT--TGCTAGCCT-------TTACATCAACTCAAAAAGGAGAAACTTTGATATAATAAATTTCTCAGGG--ATTATCTGGTTGTGATCTATTTAATATAAATGAGTCTGGACTATGAAAAACACAGT-TTTCCTTGAGTTTAGATT-TTTAGGGCCTTC---TCTCTGT-AGGGCATTAAGGCCTCATGGGGTCATGATCATTTTATAATCTTTAGGAAAAGAGCCAAGGACATTCCTCAACCAATTTTAT----ATGCAGGTCTTATAGCAAAGGCAGGGGGAGCAATGCTACAACAT---GAAGAATCAGGGAAGACTGTCAGGATGGGAGAATGCCATATGAGTTGGAGAAAAGGCTCCAAGCAGGTCCTGAATCAGAATAGAACCTACACGAATGAGGGTACATGGTCAAAGATTTGCAGATTTGGATCTGTACATCTCTATCTCTTTGATCAAACACAACTGGTCAAACTATCACAGAGCACAGAT--AATG--AGGTGCCTAAGAAA-GACCCC-Tgagagccaatgaggtacag-agtaagagaatgggttttgaagtcatgtaaacaaaagtctgagctctggctttccaatttactagttattcacccacaaaatattttcttggcctctctcagtctcaaagtcatctatataaCCCTAAAATATTGTGGGAAAAAAGTTATAAATAATACAAGTGAGATATTTGGCATATGTTTGACATTCAACATGTATGAACTATTATTACA---------TGAACAGCATCTAGAAAT----GTGAGTTATAAC-----CC----TAAAGTGCAATATTTCTGCATGGTGCTTCTGGAGCAATTCATCACTTTG i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21332958 1024 - 190850796 ATGATGTAAAGAAGAAATATTGAGTTCAGCATGGCTAGTGGAAAAGTGGTTCATAGAAAAATGTAGGAGACAAGATTTAA---------AAAGCACAGAGAACTCGCAACAAATGGCTCCGAAAAAGAAAATTTGGTGTC---ATATGGGAGCTCAGTCACACATG-GTTAAA----TAATACATGTAAACTCCTAGTCACACACATACACATAGTCTATCCTCTAAGG-CACGTGCATGG--CTTTCATCCTAGCTT-------TTACATCAACTCAAAAAAGAGGAACTTAGATATAATACATTTCTCAGGG--ATTATCTAGTTGTGATCTATTTAATATAAATGAGTCTGGACTATGAAAAACACAGT-TTTCCTTGAGTGTCTATT-TTTAGGGCCTTT---TCTTTGT-AGGGCATTAAAGTCTCATGGGGTCATGATCATATTGTAATGTTTAGGAAAAGAGCCAAGAGCATTGCTCAACCAAATTTAT----ATGCAGGTCTTACAGCAGGGG--GCAGGAGCAATGGTACAATTTGCAGAAGACTCAGGGAAGATGATCAGGATGGGAGAATGCCACATGAATTGGAAAGAAGGTTCCAAGGAGGTCCTCAATTAAAATAGAACCTACATGAATGATGGTACATGGTCAAGGATTTGAGGGTTTGGATCTGCTCATCGCTATTTCTTTGATCAAACACAATTGGTCAAACCATCACAGAGCACAGA------------TGTCTAAGAAG-GATCCC-Tgagaatcagtgaggtacag-agtcagataatgggttttgaagtcatgtaaactgaagttcaaactccagctttccaatttactagttattcacccacaaaacattttcttggcctctctcagtctcaAAGTCATCTACAGACCCCTAAAATATTGTGGGAAAAAAGTT-------ATACAAGTGAGACAGTTGACA--TGTTTGATATTCAATATGTATGAACTATTATTACA---------TGAACAGCATCTAAGCATGTATGTGAGTTTTAAC-----ACTAATTAAAGTGCTTTATTTCTGCACGTTGCTTGTGGAGCAATTCATCACTTTG i calJac3.chr3 C 0 C 0 s mm10.chr5 49308144 927 + 151834684 ATGA--TAGAGAAGATATTTTG-GTGGTGCATGACCAATAGCACTGGGATTTCTTGG--------------------------------------CAATGAACTCATAATATGTG----TGGATTAGGAAGTCTGATTTCTATAGGTAGACGCATGATAATTACTGCTTTTAAGAATGCAGACATGTAAATTGTTAAT------CATTTGCATAATCTCCCCTCTAAGA-TAAGCCAAAGGTTCTCT--TCCTAACCTAATAGACTGAAAAAAAAAAAAAAAAGAGAGACATTAACAAAGTAGATTCCTGGAAC--TTTACTTGGTTGAGGCCTTTTGCATATAAATCACT-----CTATTAAAAACATTATACTATTTTGAGTTT--ATT-TTTAAGTCCTTCTCTTCTCTGTGAGATTGTTGGGGTCTCAATGGACCATGATTTTATTGTAGATTCTAGGAAAATAGTCTAGTGTGTTGTTCAAACATTTTTAT----ATGTAGATCTTATAGAAAAGA--AATAAAGCAATGTTGTGATTTGCATAGGATTTGCAGCAAA----CAGAGAAGGAGACATCCTTGTGGATGGGAAGGAATGTGCCATGAA--CCTTGAATGAGCACGG---TTATATGAATAA---TAAACATCCAAGGCTCTGATGATCTGAAACTATGCATCTTGAGCTCTTCGATCAAATATG------CAGACTAGTACAGAGTTTTGACAAAATA--AGATGCCTAGAAAG-TAGCTCGTGACAATCAATAAGGT--GG-AATAAGGAAG------------------AAATCAGATTTTGCACTC-------CCAATTTGATA---------TCATAA------------GGCTGTGTTGGTACCAGGATCATCTACTTAAGCAGTAAATGACATG----AAAAACTTCCAATAATA----TGAACTATTGCACATATGCTTGACCTT-AGCATGTATGTACGAT--GTACAGTGACCTGGTGCATATTTTTAAAGAATG--AATGAGTTGTGAC-----------TAAAATAGGCTA---CTGGAAGT------CAGAACATTCCTCCA---TG i mm10.chr5 C 0 C 0 s canFam3.chr3 3897618 1028 - 91889043 ATGCTATAGAGAGTAAATGTTGAGGTTAACACAGCTAGTGGAGAAGTGGCGTGATAGAAAATGGAGAAAACGAGGCTAACAATAACAATAAATCACAAAAAGCTTATGACACACCACTC------AGGAAGTTTGGTACC---CTTCAGGAGCCC--TAATATAGA-ATTAGAGATTACACAAATGTAAACAGTTGGC------TATATCCATAATCTATCCTCTAAAACTAATTGCAAGC--CTTCCCTCCTAAACC-------TTATACCA---------------ACTTTAATATAACAGATTCCCTAGGGGAATTATTTGGTTGCCATTCTTTTGACATAAATGAGTCTGGGCTATGAAATCCACAAT-ATTCCTTGAGTTTCCTTTGTTTAGGGCTTTT---TCTCTATGAGAGTGTTAAGGCCTCAATGGGCCATGATCCTATGATGATCCTGAAGAAAAGAGCCAAGGACATCACTCAACCACTTTTATATACATGTATGTATTACACTGAAAG-ACCTGAAACAATGGTGCAATTTGCAGAGGATCCAGGGCAAATTGTCAGGACAGATGAACACCCAACAGGTT--AGAGAAGGCTCAAAGGAAGTCCTGAATTGGGACAGAATCCACATGCATGATTGTAAATGGTTAAGTATTTGAAAATTGGGG-------ATCTCTATCTCTTTGATCAGACAAAACTGAATGGAC-ATTACAGAGCCCTGGT--AATAACAGACATCCCATAAGTGGTTCC-Tgagagccaatgagatacagaagtatgacagtgggttgtagagtcttgtgagccagagtttgaactccaccttcccattttactaattattcacccacagaacattttcttggcctttctcagtctcgggatcatctatataaccccacagtgttgtg--aaaagacttataaataatgtatgtgagatatccagcacattcttgacattcaatatgcATGAATTATCATTATA---------TAAACAGCATCGAAGAACTTAGGTGAATTGTATCTACAAAA----TGAAGTGCTGCATATCTGAGTATAGTTGGTAGGACAACTCAACAATCTG i canFam3.chr3 C 0 I 30 a score=47124.000000 s hg38.chr4_KI270790v1_alt 210367 19 + 220246 TGGAGCAATTCATCACTTT s panTro4.chr4 21599357 19 + 193495092 CGGAGCAATTCATCACTTT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21775459 19 + 198332218 TAGAGCAACTCACCACTTT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20383755 19 - 85365473 TGGAGCAACTCATCACTTT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16850066 19 + 184069350 TGGGGCTACTCATCACTTT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20899818 19 + 189454096 TGGGGCTACTCATCACTTT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16490338 19 + 178775436 TGGGGCTACTCATCATTTT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19973060 19 - 48547382 TGGGGCTACTCATCACTTT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21333982 19 - 190850796 TGAAGTAACTTATCAATTT i calJac3.chr3 C 0 C 0 s mm10.chr5 49309071 19 + 151834684 TGCTGCCATTACAAACTAT i mm10.chr5 C 0 C 0 e canFam3.chr3 3898646 30 - 91889043 I a score=282943.000000 s hg38.chr4_KI270790v1_alt 210386 98 + 220246 ACATAGGCTC-----AGTGAGGGCC------TTTTTTTTTTTTAACCTCTTCAGTATCTTTAAATCTTTAAAGTTC-T-GAAAAAAATACCG--TATTTCCCTCTGTTGGTCT s panTro4.chr4 21599376 100 + 193495092 ACATAGGCTC-----AGTGAGGGCC----TTTTTTTTTTTTTTAACCTCTTCAGTATCTTTAAATCTTTAAAGTTC-T-GAAAAAAATACTG--TATTTCCCTCTGTTGGTCT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21775478 97 + 198332218 ACATAGGCTC-----AGTGAGGGCC--------TTTTTTTTTTAACCTCTTCAGTATCTTTAAATCTTTAAAGTTC-TAAAAAAAAATACTG--TATTTCCCTCTGTTGGTCT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20383774 95 - 85365473 ACATAGTCTC-----AGTGAGGGCC--------TTTTTTTTTTAACCTCTTCAATATCTTTAAATCATTAAAGTTC-T--AAAAAAATACTG--TATCTCCCTCTGTTGGTCT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16850085 97 + 184069350 ACATAGGCTC-----AGTGAGGACC--------TTTTTTTTTTAACCTCTTCAGTATCTTTAAATCTTTAAAGTTTAA-AAAAAAAATACTG--TATTTCCTTCTGTTGGTCT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20899837 96 + 189454096 ACATAGGCTC-----AGTGAGGACC--------TTTTTTTTTTAACCTCTTCAGTATCTTTAAATCTTTAAAGTTT-A-AAAAAAAATACTG--TATTTCCGTCTGTTGGTCT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16490357 99 + 178775436 ACATAGGCTC-----AGtgaggacc-----tttttttttttttaacttcttcagtatctttaaatctttaaagttt-a-aaaaaaaatactg--tatttcctTCTGTTGGTCt i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19973079 105 - 48547382 ACATAGGCTC-----AGTGAGGATCttttttttttttttttttAACCTCTTCAGTATCTTTAAATCTTTAAAGTTAAA-AAAAAAAATACTG--TATTTCCTTCTGTTGGTCT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21334001 98 - 190850796 ACCTAGAATC-----AGGGAGGGCC-------TTTTATTTTTTAACCTCTTCAGTATCTTTAAATCTTTAGAGTTCCA-AAAACAAATACTG--TATTTCCCTTTGTTGGTCT i calJac3.chr3 C 0 C 0 s mm10.chr5 49309090 83 + 151834684 ACATAAGGCCCTAGAAATGTGTGCT--------------------------CGGTATCTTTGAACTGATACCAATC-T-AGAAAATAACCTG--AATGCCTTTTTGTTGTTGT i mm10.chr5 C 0 C 0 s canFam3.chr3 3898676 90 - 91889043 GCCTAAACTC-----TGTGAGGGTC------------TTTTTTAGGCAGT----TGTCCTCAAACCTTTAGAGTTC-T-AGGACAAATACAGCATATTTTCTTCGGCTGGCCT i canFam3.chr3 I 30 C 0 a score=767473.000000 s hg38.chr4_KI270790v1_alt 210484 236 + 220246 AAAAGTTACTATTAAATTCTTGGATTTCACATATAATTTTATGCTCATTTAGTAAATACATGCACTTTACACATAACTTTTCAAAGTATTATCATTTTGAAGTGAAGAGATGATGGAGACTGAAAGGT-TCCATTAAATATCTTCTGCTCAGTGAAG------AAAGAGACAGCTTGCAGGGCATGCTTAAGAGACCCAAGGAGTG----TGTGACAGTCTGCAGCATAACAGACCTAACCATACAG s panTro4.chr4 21599476 236 + 193495092 AAAAGTTACTATTAAATTCTTGGATTTCACATACAATTTTATGCTCATTTAGTAAATACATGCACTTTACACATAACTTTTCAAAGTAATATCATTCTGAAGTGAAGAGATGATGGAGACTGAAAGGT-TCCATTAAATATCTTCTGCTCAGTGAAG------AAAAAGACAGCTTGCAGGGCATGCTTAAGAGACCCAAGGAGTG----TGTGACAGTCTGCAGCATAACAGACCTAACCATACAG i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21775575 234 + 198332218 AAAAATTACTATTAAATTCTTGGATTTCACATACAATTTTATGCTCATTTAGTAAATATATGCACCTTACACATAACTTTTCCAAGTAT--TCATTCTGAAGTGAAGAGATGATGGAGACTGAAAGGT-TCCATTAAATATCTTCTGCTCAGTGAAG------AAAAAGACAGCTTGCAGGGCACGCTTAAGAGACTCAAGGAGTG----TGTGACAGTCTGCAGCATAACAGACCTAACCATACAG i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20383869 236 - 85365473 AAAAATTACTATTAAATTCTTGGATTTCACATACAATTTTATGCTCATTTAGTAAATACGTGCAACTCACACATAAGTTTTCAAAGTATTATCATTCTGAAGTGAAGAGATGATGAAGACTGAAAGGT-TCCATTAAATATCTTCTGCTCGGTGAAG------AAAAAGACAGCTTGCAGGGCATGCTTAAGAGACTCAAGGAGTG----TGTGACAGTCTGCAGCATAACAGACCTAACCATACGG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16850182 235 + 184069350 AAAAATTACTATTAAGTTCTTGAATTTCACATACAGTTTTATGCTCATTTAGTAAATATATGCAC-TTACACATAACTTTTCAAAGTATTATCATTCTGAAATGAAGAGATGATGGAGACTGAAAGGT-TCCATTAAATATCTTCTGCTCAGTGAAG------AAAAAGACAGCTTGCAGGGCATGCTTAAGAGACTCAAGGAATG----TGTGACAGTCTGCAGCATAACAGACCTAACCATACAG i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20899933 235 + 189454096 AAAAATTACTATTAAGTTCTTGAATTTCACATACAGTTTTATGCTCATTTAGTAAATATATGTAC-TTACACATAACTTTTCAAAGTATTATCATTCTGAAATGAAGAGATGATGGAGACTGAAAGGT-TCCATTAAATATCTTCTGCTCAGTGAAG------AAAAAGACAGCTTGCAGGGCATGCTTAAGAGACTCAAGGAATG----TGTGACAGTCTGCAGCATAACAGACCTAACCATACAG i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16490456 231 + 178775436 aaaaattactattaaattCTTTAATTTCACATACAGTTTTAAGCTCATTTAGTAAATATATGCAC-TTACACATAACTTTTCAAAGTGTTATCATTCTGAAATGAAGAGATGATGGAGACTGAAAGGT-TCCATTAAATATCTTCTGCTCAGTGAAG------AAAA----AGCTTGCAGGGCATGCTTAAGAGACTCAAGGAATG----TGTGACAGTCTGCAGCATAACAGACCTAACCATACAG i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19973184 235 - 48547382 AAAAATTACTATTAAGTTCTTGAATTTCACATACAGTTTTATGCTCATTTAGTAAATATATGCAC-TTACACATAACTTTTCAAAGTATTATCATTCTGAAATGAAGAGATGATGGAAACTGAAAGGT-TCCATTAAATATCTTCTGCTCAGTGAAG------AAAAAGACAGCTTGCAGGGCATGCTTAAGAGACTCAAGGAGTG----TGTGACAGTCTGCAGCGTAACAGACCTAACCACACAG i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21334099 232 - 190850796 AAAAATTACTATTAAATTAT----TTTTACATATAAGTTCATGCTAATTTCGTCAATCTATGCACCTTACACATAACATTTGACAGTATTGTCATTCTGAAGTGAAGAGATGATAAAGACTGAAAGGT-TCCAGTAAATATCTTCTGCTCAGTGAAG------AAAAGGACAGCTTGCAAGGGATGCTTAAGAGACTCAAGGAGTG----TGTGGCAGTCTGCAGCATAACACACAGAAGCTTGCAG i calJac3.chr3 C 0 C 0 s canFam3.chr3 3898766 242 - 91889043 AAAA---ACAATTAAATTATTGAATTTAACATACAAGTTCATGTTCATTTAGTAAATCTAGACACTTTACATGTAACATTTCATAGTATTTTCACTCCCAAGT--AGAGGGGATGGAGACTTTATGGTGTCCATTAAATTTCTACTTCTCAATGAAGAGTATAAATAAGATGGCAAGTGAGCCTTGCCTAAGAGACCCAAGGAGAGCTCATGACACAGCCAGCCCCAATAGACACCTCAGCATACAG i canFam3.chr3 C 0 I 6 e mm10.chr5 49309173 0 + 151834684 C a score=1963237.000000 s hg38.chr4_KI270790v1_alt 210720 511 + 220246 TATCCA---------------AAG--GTCTTTGGACTTCTAGCCTGACATTCTCTTTCCTAC-ATTATCTTTTGAGCTTCCTCTACTCAGTCCTTACTCTTTCCTTTCTGGAGTTGCTTTG-TAAACACTTTAGCTTCACAGAAGTTCCTGTGAGATGTCAAAATATTCCATCTCTCTATTTAATCAGTCTGACTTTGCGTCTAAACCTAGTAAATTTGGGATATTATTTGTTTGACACCTCTGCCTTCACAAACCTATGATTCCTAATATTCTTGGTTAAGGCATCACAGATGCCTTTTAAACCAATCATTCTTCATCAAAACACAAATCCAG-AAAATCAGACTTCTTAGTAAATATTTCAAAACTTCCTATAC-----AAAAAAATCCCCAGCTCCCTTTCTTTTC---TTAGACTTCCTGTCACAACATTCACACCATTTGTGAATAACAGTCTGGAGCTGGTGTGTTAGAGTCAGGCTGAAAAATTGGATACCTCAGATGT--ACTTCGAAGTCATCCATAAAATACTCAATGGAG s panTro4.chr4 21599712 511 + 193495092 TATCCA---------------AAG--GTCTTTGGACTTCTAGCCTGACATTCTCTTTCCTAC-ATTATCTTTTGAGCTTCCTCTACTCAGTCCTTACTCTTTCCTTTCTGGAGTTGCTTTG-TAAACACTTTAGCTTCACAGAAGTTCCTGTGAGATGTCAAAATATTCCATCTCTCTATTTTATCAGCCTGACTTTGCGTCTAAACCTAGTAAATTTGGGATATTATTTGTTTGACACCTCTGCCTTCACAAACCTATGATTCCTAATATTCTTGGTTAAGGCATCACAGATGTCTTTTAAACCAATCATTCTTCATCAAAACACAAATCCAG-AAAATCAGACTTCTTAGTAAATATTTCAAAACTTCCTATAC-----AAAAAAGTCCCCAGCTCCCTTTCTTTTC---TTAGACTTCCTGTCACAACATTCACACCATTTGTGAATAACAATCTGGAGCTGGTGTGTTAGAGTCAGGCTGAAAAATTGGATACCTCAGATGC--ACTTCGAAGTCATCCATAAAATACTCAATGGAG i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21775809 511 + 198332218 TATCCA---------------AAG--GTCTTTGGACTTCTAGCTTGACATTCTCTTCCCTAC-ATTATCTTTTGAGCTTCCTCTACTCAGTCCTTAGTCTTTCCTTTCTGGAGTTGCTTTG-TAAACACTTTAGCTTCATAGAAGTTCCTGCGAGATGTCAAAATATTCCATCTCTGTATTTAATCAGCCTGACTTTGCATCTAAACCTAGTAAACTTGGGATATCATTTGTTTGACAACTCTGCCTTCACAAACCTATGATTCCTAATATTATTGGTTAAGGCATCACAGATTTCTTTTAAAACAATCATTCTCCATCAAAACACAAATCCAG-AAAATCAGACTTCTTAGTAAATATTTTAAAACTTCCTACAT-----AAAAAAATCCCCAGCTCCCTTTCTTTTC---TTAGACTTCCTGTCACAACATTCACACCATTTATGAATAACAATCTGGAGCTGGTGTGTTAGAGTCAGGCTGAAAAATTGGTTACCTCAGATTC--GCTTAGAAGTCATCCATAAAATATTCAATGGAg i ponAbe2.chr4 C 0 I 315 s nomLeu3.chr20 20384105 511 - 85365473 TGTCCA---------------AAG--GTCTTTGGACTTCTAGCCTGACATTCTCTTCCCTAC-ATTATCTTTTGAGCTTCCTCTACTCAGTCCTTACTCTTTCCTTTCTGGAGTTGCTTTG-TAAACACTTTAGCTTCATAGAAGGTCCTGTGAGATGTCAGAATATTCCATCTCTGTATTTAATCAGCCTGACTTTGTGTCTAAACCTAGTAAATTTGGGATATCATTTGTTTGACACCTCTGCCTTCACAAACCTATGATTCCTAATATTATTGGTTAAGGCATCACAGATGTCATTTAAAACAATCATTATCCATCAAAACACAAATCCAG-AAAATCAGACTTCTTAGTAAATATTTCAAAACTTCCTATAT-----AAAAAAATCCCCAGCTCCCTTTCTTTTC---TTAGACTTCCTGTCACAACATTCACACCATTTATGAATAACAATCTGGAGCTGGTGTGTTAGAGTCAGGCTGAAAAATTGGTTATCTCAGATTC--GCTTAGAAGTCATCCATAAAATACTCAATGGAg i nomLeu3.chr20 C 0 I 310 s rheMac3.chr5 16850417 511 + 184069350 TGTCCA---------------AAG--GTCTTTGTACTTCTAGCCTGACATTCTCTTGCCTAC-ATTATCTTTTGAGTTTCCTCTACTCAGTCCTTACTCTTTCCTTTCTGGAGTTGCTTTG-TAAACACTTCAGCTTCATAGAAGTTCCTATGAGATGTCAAAATATTCCATCTCTGTATTTAATCAGCCTGATTTTGCGTCTAAACCCAGTAAATTTGGGATATCATTTGTTTGACACCTCTGCCTTCACAAACCTATGATTCCTAATATTATTGGTTAAGGCATCACAGATGTCTTTTAAAACAATCATTCTTCATCAAAACACAAATCCAG-AAAATCAAACTTCTCAGTAAATATTTCAAAACTTCATATAT-----AAAAACATCCCCAGCTCCCTTTCTTTTC---TTAGACTTCCTGTCACAACATTCACACCATTTATGAATAACAATCTGGAGCTGGTGTGTTAGAGTCAGGCTAAAAAATTGGATACCTCAGATTC--ACTTAGAAGTCATCCATAAAATACTCACTGGAA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20900168 511 + 189454096 TGTCCA---------------AAG--GTCTTTGTACTTCTAGCCTGACATTCTCTTGCCTAC-ATTATCTTTTGAGTTTCCTCTACTCAGTCCTTACTCTTTCCTTTCTGGAGTTGCTTTG-TAAACACTTCAGCTTCATAGAAGTTCCTATGAGATGTCAAAATATTCCATCTCTGTATTTAATCAGCCTGATTTTGCGTCTAAACCCAGTAAATTTGGGATATCATTTGTTTGACACCTCTGCCTTCACAAACCTATGATTCCTAATATTATTGGTTAAGGCATCACAGATGTCTTTTAAAACAATCATTCTTCATCAAAACACAAATCCAG-AAAATCAAACTTCTCAGTAAATATTTCAAAACTTCATATAT-----AAAAACATCCCCAGCTCCCTTTCTTTTC---TTAGACTTCCTGTCACAACATTCACACCATTTATGAATAACAATCTGGAGCTGGTGTGTTAGAGTCAGGCTAAAAAATTGGATACCTCAGATTC--ACTTAGAAGTCATCCATAAAATACTCACTGGAA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16490687 511 + 178775436 TGTCCA---------------AAG--GTCTTCGTACTTCTAGCCTGACATTCTCTTGCCTAC-ATTATCTTTTGAGTTTCCTCTACTCAGTCCTTACTCTTTCCTTTCTGGAGTTGCTTTG-TAAACACTTCAGCTTCATAGAAGTTCCTATGAGATGTCAAAATATTCCATCTCTGTATTTAATCAGCCTGACTTTGCGTCTAAACCCAGTAAATTTGGGATATCATTTGTTTGACACCTCTGCCTTCACAAACCTATGATTCCTAATATTATTGGTTAAGGCATCACAGATGTCTTTTAAAACAATCATTCTTCATCAAAACACAAATCCAG-AAAATCAAacttctcagtaaatatttcaaaatttcatatat-----aaaaacatccccagctccctttcttttc---ttagaCTTCCTGTCACAACATTCACACCATTTATGAATAACAATCTGGAGCTGGTGTGTTAGAGTCAGGCTAAAAAATTGGATACCTCAGATTC--ACTTAGAAGTCATCCATAAAATACTCACTGGAA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19973419 511 - 48547382 TGTCCA---------------AAG--GTCTTTGTACTTCTAGCCTGACATTCTCTTGCCTAC-ATTATCTTTTGAGTTTCCTCTACTCAGTCCTCACTCTTTCCTTTCTGGAGTTGCTTTG-TAAACACTTCAGCTTCACAGAAGTTCCTATGAGATGTCAAAATATTCCATCTCTGTATTTAATCAGCCTGACTTTGCGCCTAAACCCAGTAAATTTGGGATATCATTTGTTTGACACCTCTGCCTTCACAAACCTATGATTCCTAATATTATTGGTTAAGGCATCACACATGTCTTTTAAAACAATCATTCTTCATCAAAACACAAATCCAG-AAAATCAAACTTCTCAGTAAATATTTCAAAACTTCATATAT-----AAAAACATCCCCAGCTCCCTTTCTTTTC---TTAGACTTCCTGTCACAACATTCACACTATTTACGAATAACAATCTGGAGCTGGTGTGTTAGAGTCAGGCTAAAAAATTGGATACCTCAGATTC--ACTTAGAAGTCATCCATAAAGTACTCACTGGAA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21334331 512 - 190850796 TGTCCA---------------AAGAAGGTCTTGGACTTCTAGCCTGACATTCTTTTCCCTGC-ACGATCCTTTGAGCTTCCTCTACTCAGCCCTTAGTCTTTCCATTCTGGAGTTGCTTTG-TAAACACTTTAGCTTCACAGAAGTTCCTGTGAGATGTCAAAATTTTCCACCTCTGTATTCAATCAGCCTGACTTTGCATCTAAACCCAATAAATTTGGGATATCATTTGTTTGACACCTCTGCCTTCACAAACCTATGATTCCTAATATTACTGGTTAAGGCATCACAGATTTCTTTTAAACCACTCACTCTTCATCAAAACACAAATCCAG-AAAATCAGCCTTCTAAGTAAATATTTCAAAACTCTCGATTT-----AAAAA-ATCTGCAGCTCCCTTTCTTTTC---TTAGACTTCCTGTCACAACATTCACACCACTTGTGAATAACAATCTGGAGCTGGTGTGTTAGAGTCAGGCTGAAAAACTAGATACCTCAGATTC--CCTTAGAAGTCATTCATAAAATACTCACTGGAA i calJac3.chr3 C 0 C 0 s mm10.chr5 49309173 433 + 151834684 TGTCCA---------------TTG--GTCTTTGGGTTCATGGTCTCATGTTCTGTTCCACACTGTTATCTTTTGAGCTTCCT-TGTTCTAGCTGTACTTTTTCC---CTGGGATTGCTTTATTAAACATTTCAGCTTCAGGAAAGTTCCTGTGAGATGTCAAAATATTTAAGCTCAGTATTTACTCTTCTTGACTTGGCTTCTAAACTCAGTCAAACTTGGATACTGTCTGTTTGACAACTA-----CCACTACCCTGTGATTCCTAATATTATT-GTTAAAGAATTGCAGGCTCCTTCTGAACTAATAATTCTTCCTCAAAGCAGAAAACCAG-GAAGACAGACTTCTTGGTAAACATTTCAAAACCTTATGTCTATAAAAAGAAAAGGCTCAACCCCCTCCTTTTTCCCTTTAGATTCCCTGTCACAACAGTTACACCGTTTATGAATAATAATC----------------------------------------------------------------------------CAAT---- i mm10.chr5 C 0 C 0 s canFam3.chr3 3899014 522 - 91889043 TGTCCATCACATCACAACCAGAAG--GTCTTTGGGTTTCTGGCCTGATGTTCTATTCTCTGC-ATTATCTTTTAAGCTTCCTCTCCTCAGTACTCACTCCTTTCTTTCTCGAGTCACTTTA-TAAATATTTTAGCTTCGTAAAAGTTCCTGAGGGATGTCATAATATTCCAGCTCTGTCCTTCCTCAGCCTGACTCAGCCTCTACACCTGGTAAGACTTGGATATCATTTGTTTGACACCTCTGCCTTCAGTACCTTACGATTCCCAATGTTATT-GTTAAGGAACTGCAGGTTTCTTCTAAGTGATTC---CCTCATCAAAACACAAATTAAGAAAAATCAGACTTCTTCGAAAATATTTCAAAAGTATATTCTA-----GTAAAAAGCCCCAGTTCTCTTT-TGCTC---TTAGATTCCCTGTCACAATATGCATACCATTTATGAATAATAATCTGGAGCTGGCAT-TTGGAGTATGGCTGAAAAATTGGATACCTCAGATTCATACTTGAAAGTCATCT-TAAAATACTCAATGTAG i canFam3.chr3 I 6 C 0 a score=4371361.000000 s hg38.chr4_KI270790v1_alt 211231 1230 + 220246 AAGAGGCAAG---------GAAACCCATTGGTTACAAAGGCAGCAAAACGAAGTAAGGCCACTGCCAGTGGATCATGAGAAAAGACAAGAGACATTCAAAGACACAATTGCTATCTATGATGCATCTGGCTCTGGCAGAATGATAGACATAAGCCTTCAG-C---T--CTGAGAGATGGAGAGGATTACTGCTTTGGAATAAGG----CCCTGTAATCTTTGCATTA---------------------GTATATCTGAAGCAAATGACCTTATTATTTTGATATTCTACCTTACCTTCTCTGTAACTGAAAATAGAGGACACCAAAACAACTTTGTTTGGCAATATTTTTCTTCTTCATTAGTGTTTATTTCCCCTTAGAACA--GTTCAACATTAACTGTTAAATTCTGATGAAGAct-----gttttattcttggtgatttcaagttacaaga-aaagcacctggcacatagcaggtatataataaatgttATAAaattgatttaataattaat-taattaTCAGGCCTCTTCTGCCCTAAAAGAGAGATGGCACTCTAAAAAGAAGAAAATAAAT--------TC---------TGTTTCTGGAA-GAGTAAAGTGAAAGGAAATCTATCACTGATGTGTGCTGCTTTGGCAATATGTG--------------------TTTTC-TTAATCT---------------------------------------------------------------------------------------------------ACAGCAAA---CAAATGTTATATAGGTTAGAGGTATACATATGGAAATAGCTCAATTCCTATCAAGTTTATTTGCCTAGAAT-------CTATACA-------GTAGGAAGTCTAAGGATAGCAATATTGTGTCTCATAACTTCATTAATTTTGATGCTTAGCTCCAAAGCAACTGGGACATCAGTG-TACTGTTAGCCTGGAGATGTTTACTTCTCCTTTCAGCCTCCTCATGGATAAATAACAAATCAGTACTACTGAAA-TGAGTTGCTTCTGGGGCAAGCAATGAAGCAGTTGTTCCCTCAGTAGCCAGCTCCAACAGCCTTTACAGTCTCTCAAAGAGGCATGTCTTCTGCTTACTAATAAACTGTATTTTAAGCTG-C-CAAAAAA-GCAGC---ATATGAAACACTAAATGTGAAAGTGCCTAGGCATAAAGATAAGTCTCACGTAGCAGAGGAGGGTGAGTA--ATTTTTCCCTAACTATGGGATGACCTAGA-GCACAAGTTAGAAAA----ATCGTAACAAGAC--AGA---AATTCGAAACCTAGGAA----TGTGTTCAAATGGTCCTGGAGAACATTGTCATTTAGGCCAGCAACAATTTGAGTcctgctttcaggaaatgtttgctaagaccttaagattagattccacg s panTro4.chr4 21600223 1229 + 193495092 AAGAGGCAAG---------GAAACCCATCGGTTACAAAGGCAGCAAAACGAAGTAAGGCCACTGCCAGTGGATCATGAGAAAAGACAAGAGACATTCAAAGACACAATTGCTATCTATGATGCATCTGGCTCTGGCAGAATGATAGACATAAGCCTTCAG-C---T--CTGAGAGATGGAGAGGATTACTGCTTTGGAATAAGG----CCCTGTAATGTTTGCATTA---------------------GTATATCTGAAGCAAATGACCTTATTATTTTGATATTCTACCTTACCTTCTCTGTAACTGAAAATAGAGGACACCAAAACAACTTTGTTTGGCAATATTTTTCTTCTTCATTAGTGTTTATTTCCCCTTAGAACA--GTTCAACATTAACTGTTAAATTCTGATGAAGAct-----gttttattcttggtgatttcaagttacaaga-aaagcacctggcacatagcaggtatataataaatgttataaaattgatttaataattaat-taattatCAGGCCTCTTCTGCACTAAAAGAGAGATGGCACTGTAAAAAGAAGAAAATAAAT--------TC---------TGTTTCTGGAA-GAGTAAAATGAAAGGAAATCTATCACTGATGTGTGCTGCTTTGGCAATATGTG--------------------TTTTC-TTAATCT---------------------------------------------------------------------------------------------------ACAGCAAA---CAAATGTTATATAGGTTAGAGGTATACATATGGAAATAGCTCGATTCCTATCAAGTTTATTTGCCTAGAAT-------CTATACA-------GTAGGAAGTCTAAGGATAGCAATATTATGTCTCATAACTTCATTAATTTTGATGCTTAGCTCCAAAGCAACTGGGACATCAGTG-TACTGTTAGCCTGGAGATGTTTACTTCTCCTTTCAGACTCCTCAGGAATAAATAACAAATCAGTACTACTGAAA-TGAGTTGCTTCTGGGGCAAGCAATGAAGCAGTTGTTCCCTCAGTAGCCAGCTCCAACAGCCTTTACAGTCTCTCAAAGAGGCATGTCTTCTGCTTACTAATAAACTGTATTTTAAGCTG-C-CAAAAAA-GCAGC---ATATGAAACACTAAATGTGAAAGTGTCTAGGCATAAAGATAAGTCCCATGTAGCAGAGGAGGGTGAGTA--ATTTTTCCCTAACTATGGGATGACCTAGA-ACACAAGTTAGAAAA----ATCATAACAAGAC--AGA---AATTCAAAACCTAGGAA----TGTGTTCAAATGGTCCTGGAGAACACTGTCATTTAGGCCAGCAAC-ATTTGAGTcctgctttcaggaaatgtttgctaagaccttaagattagattccatg i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21776635 1220 + 198332218 AAGAGGCAAG---------GAAACCTATTGGTTACAAAGGCAGCAAAATGAAGTAAAGCCACTGTCAGTGGATCATGAGAAAAGACAAGAAACATTCAAAGACACAATTGCTATCTATGACGCATCTGGCTCTGGCAGAATGATAGACATAAGCCTTTAG-C---T--CTGAGAGATGGAGAGGATTACTGCTTTGGAACAAGG----TCCTGTAATCTTTGCATTA---------------------GTATATCTGAAGCAAATGACCTTATTATTTTGATATTCTATCTTACCTTCTCTGTAACTGAAAATAGAGGACACCAAAACAAc----tttggcaacatttttcttcttcatta----ctattttcccttagaata--gttcaatattaactgttaaattctgatgaagact-----gtttctatcttggtgatttcaagttacaagc-aaagcacctggcacatagcaggtatataataaatgttATGAAATTGATTTACTAATTAAT-TA---ATCAGATCTCTTCTGCACTAAAAGAGAGATGGCACTGTAAAAAGAAGAAAATAAAT--------TC---------TGTTTCAAGAA-GAATAAAATGAAAGGAAATCCATCACTGATGTGTACTGCTTTGGCAATATGTG--------------------TTTTC-TTAATCT---------------------------------------------------------------------------------------------------ACAGCAAA---CAAACGTTATGTAGGTTAGAGGTATACATATGGAAATAGCTCCATTCCTATCAAGTTTATTTGCCTAGAAT-------CTATACA-------GTAGGAAGTCTAAGGATAGCAATATTATGTCTCATAACTTCATTAATTTTGATGCTTAGCTCCAAAGCAACTAGGACATCAGTG-TACTGTTAGCCTGGAGATGTTTACTTCTCCTTTCATACTCCTCATGGATAAATAACAAATCAGTACTACTGAAA-TGAGTTGCTTTTGGGGCAAGCAATGAAGCAGTTGCTCCCTCAGTAGCCAGCTTCAACAGCCTTTACAGTCTCTCAAAGAGGCATGTCTTCTGCACACTAATAAACTGTATTTTAAACTG-C-CAAAAAA-GCAGC---ATATGAAACACTAAATGTGAAAGTGTCTAGGCATAAAGATAAGTCTCATGTAGCAGAGGAGGGTGAGTAATATTTTTGCCTAACTATGGGATGGCCTAGA-GCACAAGTTAGAAAA----ATCATAACAAGAC--AGA---AATTCGAAACCTAGGAA----TGTGTTCAAATGGTCCTAGAGAATACTGTCATTTAGGCCAGCAAC-ATTTGAGTcctgctttcaggaaatgtttgctaagaccttaagattagattccatg i ponAbe2.chr4 I 315 C 0 s nomLeu3.chr20 20384926 1227 - 85365473 AAGAGGCAAG---------GAAACCCATTGGTTACAAAGGCAGCAAAACGAAGTAAAGCCACTGCCAGTGGATCATGAGAAAAGACAAGAGACATTCAAAGACACAATTGCTATCTATGACGCATCTGGCTCTGGCAGAATGATAGACATAAGCCTTCAT-C---T--CTGAGAGATGGAGAGGATTACTGCTTTGGAACAAGG----CCCTGTAATCTTTGCATTA---------------------GTATATCTGAAGCAAATGACCTTATTATTTTGATATTCTATCTTACCTTCTCTGTAACTGAAAATAGAGGACACCAAAACAAC----TTTGGCAATATTTTTCTTCTTCATTAGTGTCTATTTCCCCTTATAACA--GTTCAGTATTAACTGTTAAATTCTGATGAAgact-----gtttctatcttggtgatttcaagttacaagc-aaagcacctggcccatagcaggtatataataaatgttATGAAATTGACTTACTAATTAAT-TAATTATCAGATCTCTTCTGCACTAAAAGAGAGATGGCACTGTAAAAAGAAGAAAATAAAT--------TC---------TGTTTCAAGAA-GAATAAAATGAAAGGAAATCTATCACTGATGTGTACTGCTTTGGCAATATGTA--------------------TTTTC-TTAATCT---------------------------------------------------------------------------------------------------ACAGCAAA---CAAATGTTATGTAGGTTAGAGGTATACATATAGAAATAGCTCGATTCCTATCAATTTTATTTGCCTAGAAT-------CTATACA-------GTAGGAAGTCTAAGGAGAGCAATATTATGTCTCATAACTTCATTAATTTTGATGCTTAGTTCCAAAGCAACTAGGACATCCGTG-TACTGTTGGCCTGGAGATGTTTACTTCTCCTTTCAGAATCCTCATGGATAAATAACAAATCAGTACTACTGAAA-TGAGCTGTTTCTGGGGCAAGCAATGAAGCAGTTGCTCCCTCAGTAGCCAGCTTCAACAGCCTTTACAGTCTCTCAAAGAGGCATGTCTTCTGCTTACTAATCAAATGTATTTTAAGCTG-C-CAAAAAA-GTAGC---ATATGAAACACTAAATGTGAAAGTGTCTAGGCATAAAGATAAGTCTCATGTAGCAGAGGAGGGTGAGTAATATTTTTGCCTAACTATGGGATGGCCTAGA-GCACAAGTTAGAAAA----ATCATAACAAGAC--AGA---AATTCGAAACCTAGGAA----TGTGTTCAAATGGTCCTGGAGAATACTGTCATTTAGGCCAGCAAC-ATTTGAGTcctgctttcaggaaatgtttgctaagaccttaagattagattccatg i nomLeu3.chr20 I 310 C 0 s rheMac3.chr5 16850928 1224 + 184069350 AAGAGGCAAG---------GAAACCCATTGGTTACAAAGGCATCAAAATGAAGTAAAGCCACTGCCAGTGGATCATGAGAAAAGACAAGAGACATTCAAAGACACAATTGCTATCTATGACGCATCTGGCTCTGGCAGAATGATAGACATAAGCCTACAG-C---T--CTGAGAGATGGAGAGGATTACAGCTTTGGAACAAGG----CCCTGTAATCTTTGCATTA---------------------GTATATCTGAAGCAAATGACCTTATTATTTTGATATTCTATCTTACCATCTCTGTAACTGAAAATAGAGGACACCAAAACAACTTTGTTTGGCAATATTTTTCTTCTTCATTAGTGTCTATTT-CCCTTAGAAAAACGTTCAATATTAACTGTTAAATTCTGATGAAGACT-----GTTTTTATCTTGGTGATTTCACGTTACAagt-aaagcacctggcacatagcaggtatataataaatgtgatgaatTTGATTGAC----TAAT-TAATTATCAGATCTTTTCTATACTAAAAGAGAGATGGCACTGTAAAAAGAAGAAAATAAAT--------TC---------TGTTTCTGGAA-GAATAAAATGAAAGGAAATCTATCACTGA-GTGTACTGCTTTGGCAATATGTA--------------------TTTTC-TTAATCT---------------------------------------------------------------------------------------------------ACAGCAAA---CAAATGTTATGTAGGTTAGAGGTATACATATGGAAATAGCTCGATTCCTATCAAGTTTATTTGCCTAGAAT-------CTATAGA-------GTAGGAAGTCTAAGGACAGCAATATTAGGTCTCATAACTTCATTAATTTTGATGCTTAGCTTCAAAGCAACTAGGACATCAGTG-TACTGTTAGCCTGGAGATGTTTATTTCTCCTTTCAGACTCCTCATGGATAAATAACAAATCAGTACTACTGAAA-TGAGTTGCTTCTGGGGCAAGCAATGAAGCAGTTGCTCCCTCAATAGCCAGCTTCAACAGGCTTTACAGTCTTTCAAAGAGGCATGTCTTCTGCTTACTAATAAACTGCATTTTAAGCTG-C-CCAAAAA-GCAGC---AGATGAAACACTAAATGTGAAACTGATTAATCATAAACATGAGTCTCATGTAGCAGAGGATGGTGAGTAATATTTTTGCCTAACTATAAGATGGCCTAGA-GTACAAGTTAGAGAA----ATCAT---AAGAC--AGA---AATTTGAAACCTAGGAA----TGTGTTCAAATGGTCCTGGAGAATATTGTCATTTAGGTCAGCAAT-ATTTGAGTcctgctttcaggaaatgtttgctaagaccttaagattagattccatg i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20900679 1228 + 189454096 AAGAGGCAAG---------GAAACCCATTGGTTACAAAGGCATCAAAATGAAGTAAAGCCACTGCCAGTGGATCATGAGAAAAGACAAGAGACATTCAAAGACACAATTGCTATCTATGACGCATCTGGCTCTGGCAGAATGATAGACATAAGCCTACAG-C---T--CTGAGAGATGGAGAGGATTACAGCTTTGGAACAAGG----CCCTGTAATCTTTGCATTA---------------------GTATATCTGAAGCAAATGACCTTATTATTTTGATATTCTATCTTACCATCTCTGTAACTGAAAATAGAGGACACCAAAACAACTTTGTTTGGCAATATTTTTCTTCTTCATTAGTGTCTATTT-CCCTTAGAAAAACGTTCAATATTAACTGTTAAATTCTGATGAAGACT-----GTTTTTATCTTGGTGATTTCACGTTACAAGT-AAagcacctggcacatagcaggtatataataaatgtgatgaatTTGATTGACTAATTAAT-TAATTATCAGATCTTTTCTATACTAAAAGAGAGATGGCACTGTAAAAAGAAGAAAATAAAT--------TC---------TGTTTCTGGAA-GAATAAAATGAAAGGAAATCTATCACTGA-GTGTACTGCTTTGGCAATATGTA--------------------TTTTC-TTAATCT---------------------------------------------------------------------------------------------------ACAGCAAA---CAAATGTTATGTAGGTTAGAGGTATACATATGGAAATAGCTCGATTCCTATCAAGTTTATTTGCCTAGAAT-------CTATAGA-------GTAGGAAGTCTAAGGACAGCAATATTAGGTCTCATAACTTCATTAATTTTGATGCTTAGCTTCAAAGCAACTAGGACATCAGTG-TACTGTTAGCCTGGAGATGTTTACTTCTCCTTTCAGACTCCTCATGGATAAATAACAAATCAGTACTACTGAAA-TGAGTTGCTTCTGGGGCAAGCAATGAAGCAGTTGCTCCCTCAATAGCCAGCTTCAACAGGCTTTACAGTCTTTCAAAGAGGCATGTCTTCTGCTTACTAATAAACTGCATTTTAAGCTG-C-CCAAAAA-GCAGC---AGATGAAACACTAAATGTGAAACTGACTAATCATAAACATGAGTCTCATGTAGCAGAGGATGGTGAGTAATATTTTTGCCTAACTATAAGATGGCCTAGA-GTACAAGTTAGAGAA----ATCAT---AAGAC--AGA---AATTTGAAACCTAGGAA----TGTGTTCAAATGGTCCTGGAGAATATTGTCATTTAGGTCAGCAAT-ATTTGAGTcctgctttcaggaaatgtttgctaagaccttaagattagattccatg i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16491198 1229 + 178775436 AAGAGGCAAG---------GAAACCCATTGGTTACAAAGGCATCAAAATGAAGTAAAGCCACTGCCAGTGGATCATGAGAAAAGACAAGAGACATTCAAAGACACAATTGCTACCTATGACGCATCTGGCTCTGGCAGAATGATAGACATAAGCCTACAG-C---T--CTGAGAGATGGAGAGGATTACAGCTTTGGAACAAGG----CCCTGTAATCTTTGCATTA---------------------GTATATCTGAAGCAAATGaccttattattttgatattctaTCTTACCATCTCTGTAACTGAAAATAGAGGACACCAAAACAATTTTGTTtggcaatatttttcttcttcattagtgtCTGTTT-CCCTTAGAACAACGTTCAATATTAACTGTTAAATTCTGATGAAGACT-----GTTTTTATCTTGGTGATTTCACGTTACAAgt-aaagcacctggcacatagcaggtatataataaatgttatgaATTTGATTGAC----TAAT-TAATTATCAGATCTTTTCTGCACTAAAAGAGAGATAGCActgtaaaaagaggaaaataaat--------tc---------tgtttctggaa-gaataaaatgaaaggaaatctaTCACTGATGTGTACTGCTTTGgcaatatgta--------------------ttttctttaatct---------------------------------------------------------------------------------------------------aCAGCAAA---CAAATGTTATGTAGGTTAGAGGTATACATATGGAAATAGCTCAATTCCTATCAAGTTTATTTGCCTAGAAT-------CTATAGA-------GTAGGAAGTCTAAGGACAGCAATATTAGGTCTCATAACTTCATTAATTTTGATGCTTAGTTTCAAAGCAACTAGGACATCAGTG-TACTGTTAGCCTGGAGATGTTTACTTCTCCTTTCAGACTCCTCATGGATAAATAACAAATCAGTACTACTGAAA-TGAGTTGCTTCTGGGGCAAGCAATGAAGCAGTTGCTCCCTCAATAGCCAGCTTCAGCAGGCTTTATAGTCTTTCAAAGAGGCCTGTCTTCTGCTTACTAATAAACTGCATTTTAAGCTG-C-CCAAAAA-GCAGC---ATATGAAACACTAAATGTGAAACTGACTAATCATAAACATGAGTCTCATGTAGCAGAGGACGGTGAGTAATATTTTTGCCTAACTATAAGATGGCCTAGA-GTACAAGTTAGAGAA----ATCATAACAAGAC--AGA---AATTTGAAACCTAGGAA----TGTGTTCAAATGGTCCTGGAGAATATTGTCATTTAGGTCAGTAAT-ATTTGAGTCCTGCTTTCAGGAAATGTTTGCTAAGACCTTAAGATTAGATTCCATG i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19973930 1222 - 48547382 AAGAGGCAAG---------GAAACCCCTTGGTTACAAAGGCATCAAAACGAAGTAAAGCCACTGCCAGTGGATCATGAGTAAAGACAAGAGACATTCAAAGACATAATTGCTATCTATGACGCATCTGGCTCTGGCAGAATGATAGACATAAGCCTTCAG-C---T--CTGAGAGATGGAGAGGATTACAGCTTTGGAACAAGG----CCCTGTAATCTTTGCATTA---------------------GTATATCTGAAGCAAATGACCTTATTATTTTGATATTCTATCTTACCATCTCTGTAACTGAAAATGGAGGACACCAAAACAACTTTGTTTGGCAATATTTTTCTTCTTCATTAGTGTCTATTT-CCCTTAGAACA--GTTCAATATCAACTGTTAAATTCTGATGAAGACT-----GTTTTTATCTTGGTGATTTCACATTACAAGT-AAagcacttggcacatagcaggtatataataaatgttATGAATTTGATTGAC---------TAATTATCAGATCTTTTCTGCACTAAAAGAGAGATAGCACTGTAAAAAGAAGGAAATACAT--------TC---------TGTTTCTGGAA-GAATAAAATGAAAGGAAATCTATCACTGATGTGTACTGCTTTGGCAATATGTA--------------------TTTTC-TTAAGCT---------------------------------------------------------------------------------------------------ACAGCAAA---CAAATGTTATGTAGGTTAGAGGTATACATATGGAAATAGCTCGATTCCTATCAAGTTTATTTGCCTAGAAT-------CTATAGA-------GTAGGAAGTCTAAGGACAGCAATATTATGTCTCATAACTTCATTAATTTTGATGCTTAGCTTCAAAGCAACTAGGACATCAGTG-TACTGTTAGCCGGGAGATGTTTACTTCTCCTTTCAGACTCCTCATGGATAAATAACAAATCAGTACTACTGAAA-TGAGTTGCTTCTGGGGCAAGCAATGAAGCAGTTGCTCCCTCAATAGCCAGCTTCAACAGGCTTTACAGTCTCTCAAAGAGGCATGTCTTCTGCTTACTAATAAACTGCATTTTAAGCTG-C-CCAAAAA-GCAGC---AGATGAAACACTAAATGTGAAACTGACTAATCATAAACATGAGTCTCATGCAGCAGAGGACGGTGAGTAATATCTTTGCCTAACTATAAGATGGCCTAGA-GTACAAGTTAGAGAA----ATCATAACAAGAC--AGA---AATTTGAAACCTAGGAA----CGTGTTCAAATGGTCCTGGAGAATATTGTCATTTAGGTCAGCAAT-ATTTGAGTcctgctttcaggaaatgtttgctaagaccttaagattagattccatg i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21334843 1223 - 190850796 AAGAGGCACG---------GAAACCCATCGGTTACAAAGGCAGCAAAACGAAGTCAGGCCACTACCAGTGGATCAAGAGAAAAGAT--GAGACAATCAAACACACAATTGTTATCAATGACGCATCTGGCTCTGGCAGAATGATAGACATAAGCCTTCCGCC---T--CTGAGAGATGGAGAGGATTAGTGCTTTGGAACAATG----CTCTGTAATCTTTGCATTA---------------------GTAGATCTGAAGCAAATGACCTTATCATTTTGATATTCTATCTTACCTTCTCTGTAACTGAAAACAGAAGACACCAAAACAACTCTCTTTTGCAATACTG---TTCTTCATTAGTGTCTATTTCCCCTTAGAACA--GTTTAATATTAATTGTTAAATTCTGATGAAGAct-----gtttttatcttgctgatttcaagttataagc-aaagcacctggcacatagcaggtatataataaatattATAAAATTGATTTAAGAATTAAT-TAATTGT---GTCTCTTCTGTACTAAAAGAGAGATAGCattataaaaaataaaaaataaat--------tC---------TGTTTCTGAAG-TAATAAAATGAAAGGAAATATATCACTGACGTGTACTGCTTTAGCAATATGTG--------------------TTTTC-TTAATTT---------------------------------------------------------------------------------------------------ACAGCAAA---CAAATGTTATGTAGGTTAAAGGTATACATATGGAAATAGCTTGATTCCTATCAAGTCTATTTGCCTAGAAT-------CTATACT-------GTAGGAAGTCTAAGGATAGCAATATTATGTCTCATAACTTCATTAATTTTGATGCTTAGCTCCGAAGCAGCTAGGACATCAGAG-TGCTGTTAGCCTGGAGATGTTTACTTCTCCTTTCAGACTCCTCATGGATACATAACAAATCAGTACTACTGAAA-TGAGTTGCTTCTGGGGCAAGCAGTGAAGCAGTTGCTCCCTCAACAGCCAGCTTCAACAGCCTTT--AGTCTCTCAAAGAGGCATGTCTTCTGCTTACTAATAAACTGTGTTTTAAGCAGTC-CAAAAAG-GCAGC---ATATGAAACACTAAATGTGGAAGTGTCTAGACATAAAGATGAGTCTCATGTAGCAGAGGAGGGTGAGTAATATTTTTGCTAAACTATGGGATAACATAGA-ACACAAGTTAGAAGA----ACCATAACAAGAC--AGA---AATTCAAAACCTAGGAA----TTTGTTCAAATGGTCCTGGAGAATACTGGCATTTAGGCCAGCAAC-ATTTGAGTCTTGctttcaggaaatgtttgctaagaccttaagattagattccatg i calJac3.chr3 C 0 C 0 s mm10.chr5 49309606 1186 + 151834684 AAAAAGAAAA---------GAAAAACATCAGCTACAAAAGGAGAAAGGGGAAAACAGAAGTCT-CTAGTGTATCACTGAAGGAGACAAGGGACATTCAAAGACACAACTGCC-TCTTTGATGGGCCCCAC-CTGACAAAGTAACCGTCACCCCCCTCGAA-CCTAT--CTCAGACATGCTGATTGTCACTGC---AGAACTCGGTCTATCCAGTGATCTTTGCATTA---------------------CTATGTCTCAAACAAAAAATCTGATC----TG--ACTCCATCT---CATCTCT-TAAGTGCAGGCAGAGGATACCAAAACCACCTTCCTT-GCAATGTTTG-----------------------CCCTTTAATCT--ATATGATAGCAATCAGTACACTCCAACCATGACT-----CTCTTTTAGCAACTGCTCTTGATTTAC------TGTCCCCTAGCATG-GGCAGGCAAATAATAACTCACAGGAACTTGGTTTCTTAATTGACATACTTATGTGACCTC--CAATATTAAAAAGTAAATATTACTTTAAAGAGAAGCAAATAAATTGTTTTGCTT---------TGTTCTTTTAA-GAAAATAATGAAAGGCGATCATTCACTGC--TATACTGCTTTGACACTATGTAGGGTTTTTTTTGTTTGTTTGTTTGT-TTTATTA---------------------------------------------------------------------------------------------------ACAACAAA---TAAATGCTATGTAGGTTAAAAGGATACATATGGAA--------ATCCCCATCAAGTTCATATGCATAAAAC-------CTGCAAGCTATTTCGTAGAAAATCTGTGGA-AACAATGGCATGCTTCATAACTTCATTAATTTTGATGCTTTGCTCCAAAACAGCGAGG-CACCAGGGTTACTGTCAGCCTGGGGATGTTTACTCCTCCTTCCAGAGTCCTCATGGGTAAGTGGGTGA-----AGCACTGAAG-TGACTTGCTTCTGGAG-AAGCAATGAAGC---TATTCTCATCATAGCTAGCTTTAA----------ATTCTCTAAAGGAATTCTGTCGTCTGCTTACTACTAAACTGCATTTCAAGCAG-C-TACAAAGTGCAGC---ATATGAAGCACTATATGTGAAAGTGTCTAAGCATAAGCATGAGTATGGGACGGCAGAGGAGAA--------------ACCTGACTATTGCTGAGCCTGGA-CCACTAGTTCAGACA----CTCATCTGAAGACCTAGACCTAACTCAGAAGCAAAGAA----CACATTCAAATCCTCATGAGAAATATTGAAATCTAG--TGTTAAG-GTCAGATGCCTGACTCTGGGATATATTTGGTAAGGTCTTAAAATTAGAGTCTgtg i mm10.chr5 C 0 I 1083 s canFam3.chr3 3899536 1319 - 91889043 -AAAGGCGGGGGGGGTGGTGGGAAACATCAGCTACAAAGCCAGAAGAATGAAATCAGGCCACTACCAGTGGACCACTTG-ACAGACGGGAGG----CAAAGATATAATTGTTCTCTCTGGCGTGCCTCTTTCTGGAAGAGTGATAGACAC-AGCCTTCAA-C---TTACTGCTTGGTATGGAGGATTA--------------------CCCAGTAATCACTGCATGATCAGTAGTGAAGAGATGATAGGTACACCTGAAACA----ACTTTATCATTGTGATATTTTATCTTGCCATCTC--TAATCTAAAGTAGATGATACCAAGACAAGTTTATCTTGTAATATTTTTCTTCTTCATAAGCATCTA---------AAAACA--GTTCAATATTCATCATTAAATTCTGACAAAGATTGTCAAGTTCCTAACTTGCTGATTTCCTGTTAGTAGCAAAAGCACCTGGCATATAGCAGGT--ATAGtaaattatataaaattaatttaC----TAAT-TA---GCCAGACAGCTTCCATACTCAAAGAGAGATCTGTATTTAAAGGGAAGAAAATAAAT--------TCTAGTCTGAATATTTCTGGAAGGAACAAAATGAAAGTAGACCTATCACTGGCCTGTACTGCTTTGGCAATGTGTG--------------------TTTTT-TTAATTTGGTGGGgaaaaaaaaagaaaagaaagaaaagaaaagaaaagaaaagaaaaaagaaaagaaaagaaaagaaaagaaagaaaagaaaagaaaagaaaaagaaaagaaaagagaaAATGCTGTGTGGG-TAAAAGTACACATTTTGAAATTGCTTGATTCTTATCAAGTTCATCTGCATAAAATCTGCCAACTATACG-------ATAGGAAGTCTATGGATGACAATGTTATGTCTCATAACTTCATTAATTCTGATGCTTAGTTCCAGAGCAGCTAGGGCATCAGTA-AAC-ATTAGCCTGAAGATATTTACTTCTCCTTCCAGACTCCTCACGGATAAATAACAGAACAGCACTGCTGGAACTGACTTGTTTCTGGGGCAAGCAATACAGTAGTTGCTACCTCAACAGCTAGACTCAACAGCCTTTACATTCTCTCAAAGAAGC----------------AGAAAACTGTATTTTAAGGAA-CTCAAAGAA-GCAGCTAACCATGAAACACTAACCATAAAAGTGTCTAGGCATAAAGATGAGCCTCACATAGCAGAAGAGATTGAGTAATATTTTCACCCAACTATGGAATAGCCTCAATGCATAACTTAGGAAAACACATCATCAGGAGCC--AGG---AATTCAGAAACCAGGAATGGGTGCGTCCAAGTAGTCCCAAG---------------TGCCAGTA---TTGGGAGTACTGA-TTCTGGAAGTTTTTGCTTAGACCCTATGATTAGATTCCATG i canFam3.chr3 C 0 C 0 a score=11880.000000 s hg38.chr4_KI270790v1_alt 212461 5 + 220246 tccct--- s panTro4.chr4 21601452 5 + 193495092 tccct--- i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21777855 5 + 198332218 tccct--- i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20386153 5 - 85365473 tccct--- i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16852152 5 + 184069350 tgcct--- i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20901907 5 + 189454096 tgcct--- i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16492427 5 + 178775436 TGCCT--- i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19975152 5 - 48547382 tgcct--- i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21336066 5 - 190850796 tccct--- i calJac3.chr3 C 0 C 0 s canFam3.chr3 3900855 8 - 91889043 TCCCTAAT i canFam3.chr3 C 0 C 0 e mm10.chr5 49310792 1083 + 151834684 I a score=1277492.000000 s hg38.chr4_KI270790v1_alt 212466 369 + 220246 gtgaatacccttatctcctcatgttttcagaaataaatcatttatcactctgcactgtaattgcttctttaattg-tctgcttccctccccaaatgtttgctcactgagaaaatatcctgttcaccaccatttatacagtggctagcacagtgcccgacacaaagtagataagcaatatatatggcttcaatcgatgga----tCAATCCTGATTTGTGTCAATCATACATAAGAAC-ATAGCTA-TAAATTCTCAATTATCTTTCTGTAGATTTGGGAAAGTAGATTCTTCCATTATTATGAGG-GGAAATCTATTTCCCCCTAGCCATAAGCTCAATCTGTCTAGGGAAGG-GGAATCTACATGT-----------TTGGCACTACA s panTro4.chr4 21601457 366 + 193495092 gtgaatacccttatctcctcatgttttcagaaataaatcatttatcactctgcactgtaattgcttctttaattg-tctgcttccctccccaaatgtttgctcactgagaaaatatcctgttcaccaccatttatacagtggctagcacagtgcctgacacaaagtagataagcaatatatatGGCTTCAATCGAAGGA----TCAATCCTGATTCGTGTCAATCATACATAAGAAC-ATAGCTA-TAAATTCTC---TATCTTTCTGTAGGTTTGGGAAAGTAGATTCTTCCATTATTATGAGG-GGAAATCTATTTCCCCCTAGCCATAAGCTCAATCTGTCTAGGGAAGG-GGAATCTACATGT-----------TTGGCACTACA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21777860 369 + 198332218 gtgaatacccttatctcctcatgttttcagaaataaatcatttatcactctgcactgtaactgcttctttaattg-tctacttccctccccaaatgtttgctcactgagaaaatatcctgttcaccaccatttatacagtggctagcacagggcctgacacaaagcagataagcaatacatacggcttcaatcgatgga----tCAATCCTGATTTGTGTCAATCATACATAAGAAC-ATAGCTA-TAAATTCTCAATCATCTTTCTGTAGGTTTGGGAAAGTAGATTCTTTCATTATTATGAGG-GGAAACCTATTTCCCCCTAGCCATAAGCTCAATCTGTCTAGGGAAGG-GGAATCTATATGT-----------TTGGCACTATA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20386158 369 - 85365473 gtgaatacccttatcttctcatgttttcagaaataaatcatttatcactctgcactgtaattgcttctttaattg-tctgcttccctctccaaatgtttgctcactgagaaaatatcctattcaccaccatttatacagtggctagcacagtgcccgacacaaagtagataagcaatacatatggcttcaatcaatgga----tGAATCCTGATTTGTGTCAATCATACATAAGAAC-ATAGCTA-TAAATTCTCAATTATCTTACTGTAGGTTTGGGAAAGTAGATTCTTCCATTATTATGAGG-GGAAATCTATTTCCCCCTAGCCATAAGCTCAATCTGTCTAGGGAAGG-GGAATCTATATGT-----------TTGGCACTACA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16852157 374 + 184069350 gtgaacacccttatttccctatgctttcagaaataaatcatttatcactctgcactgtaactgcttctttaattg-tctacttcgccccccaaatgtttgctcactgacaaaatatcctgttcaccagcatttatacagtggctagcacagtgcctgacacaaagcagataatctatacatatGACTTCAATCCATGGA----TCAATGCTGATTTGTGTCAATCATGCATAAGAAC-ATAGCTA-TAAATTCTAAATTATCTTTCTGTGGGTTTGGGAAAGTAGATTATTTCATTATTATGAGG-GGAAATCTATTTCCCCCTAGCCACAGGCTCAATTTATCTAGGGAAGG-GGAATCTATATAT------TATGGTTGGCACTATA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20901912 374 + 189454096 gtgaacacccttatttccctatgctttcagaaataaatcatttatcactctgcactgtaactgcttctttaattg-tctacttcgccccccaaatgtttgctcactgacaaaatatcctgttcaccagcatttatacagtggctagcacagtgcctgacacaaagcagataatctatacatatGACTTCAATCCATGGA----TCAATGCTGATTTGTGTCAATCATGCATAAGAAC-ATAGCTA-TAAATTCTAAATTATCTTTCTGTGGGTTTGGGAAAGTAGATTATTTCATTATTATGAGG-GGAAATCTATTTCCCCCTAGCCACAGGCTCAATTTATCTAGGGAAGG-GGAATCTATATAT------TATGGTTGGCACTATA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16492432 374 + 178775436 GTGAACACCCTTATTTCCCCATGCTTTCAGAAATAAATCATTTATCACTCTGTACTGTAATTGCTTCTTTAATTG-TCTATATCACCCCCCAAATGTTTGCTCACTGACAAAATATCCTGTTCACCAGCATTTATACAGtggctagcacagtgcctgacacaaagcAGATAATCTATACATATGACTTCAATCCATGGA----TCAATGCTGATTTGTGTCAATCATGCATAAGAAC-ATAGCTA-TAAATTCTAAATTATCTTTCCATGGGTTTGGGAAAGtagattatttcattattatgagG-GGAAATCTATTTCCCCCTAGCCAGAGGCTCAATTTATCTAGGGAAGG-GGAATCTATATAT------TATGGTTGGCACTATA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19975157 373 - 48547382 gtgaacacccttatgtccctatgctttcagaaataaatcatttatcactctgcactgtaactgcttctttaattg-tctactttgccccccaaatgtttgctcactgacaaaatatcctgttcaccagcatttatacagtggctagcacagtgcctgacacaaagcagataatctatacatACGACTTCAATCCATGGA----TCAATGCTGATTTGTGTCAATCATGCATAAGAAC-ACAGCTA-TAAATTCTAAATTATCTTTCTGTGGGTTTGGGAAAGTAGATTATTTCATTATTATGAGG-GGAAATCTATTTCCCCCTAGCCACAGGCTCAATTTATCTAGGGAAGG-GGAATCTATATAT------TATGGTT-GCACTATA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21336071 373 - 190850796 gtgaatactcttatctccccatgctttcagaaataaattgtttattgctctgcactgtaattgcttctttaattg-tgtacttcccttcccaaatgtttggtcactgaggaaatatcctgtttaccatcatttatatagctgtgagcatagtgcccgacacaaagcagataagcaataagtatGGTTTCAATCGACGGA----TCAATTCTGATTTGTGTTAATCACACACAA-AAT-ATAGCTA-TACATTCTAAATTATCTTTCTGTAGGTTTGGGAAAGTAGATTCTTCAATTATTATGAGG-GGAAATCTATTTCCCCCTAGCCATAGCCTCTATCTATCTAGGGAAGG-GGAATCTACGTAT------TATGCTTGGCACTACA i calJac3.chr3 C 0 C 0 s mm10.chr5 49311875 354 + 151834684 GTGAATACCCTAAATTCCATAT-CCTTCATAAACAAATCACTTACCATGCTACACCAACACTG-GTGTTTAATTG---AGTTTCCTACCCCAAATATTTGCTTTATGAGGAATGATCCTGATCA--ATCATT---------ATTAATATTTAGACTGATACAAA-TAGGTAAGCAATGCTGATTTCTTCTATTGGCCAA----TCTACTATGATATACGTCACCTATACAAGAAAATAATGATAA-TACATTCTAAGGTGTTCTCTTTAATTTTCTCAAAGATCAACTCTGTTATTATTAGAAAATTAAAATCTAATTCTTCCCAACTATATTCTCAAACTATCTAGAAAATC-AGAGCTTATATC------------TTGGCTCTATA i mm10.chr5 I 1083 I 8 s canFam3.chr3 3900863 383 - 91889043 ATGAACACCTTGAATTCCCTATGGTTTTGCAAACAGGTTACTTTTTATGCTACACTGTGATTGCTTGTTCAAAGGGTCTTTTCCTCTCCTTGAGCATTTG----CTAAGAAActatcccattcaccactcttcatacagtggctagcacagtgcctgacacaaaacagataataaatatacagttattcaatcaatgaGAAACTCAATCCTGACTTGTGTCAATCATACATTAGAAT-GCTGCTACTAAATCCTCAATTCTCTTTTGTAAGGTTGGGGAAAATCCATTCTTTCATTATTTAGAAG-TAAAAGTTGATTCCCTCAAGCCACAGTCTGAATCTATCTAGGGAAGGAGGAATATATATATATATATTGCATCTGGTGCTACA i canFam3.chr3 C 0 C 0 a score=295743.000000 s hg38.chr4_KI270790v1_alt 212835 91 + 220246 CAGTGCAAAAATTATGGT--------AATCTGATAACTTATTTCTC-AAATGTTTTGTTGGTTAGTACTCTAGAATACTGAAACACATAGAGTG-GTCACA s panTro4.chr4 21601823 87 + 193495092 CAGTGCAAAAATTACGGT--------AATCTGATAAC----TTCTC-AAATGTTTTGTTGGTTAGTACTCTAGAATACTGAAACACATAGAGTG-GTCACA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21778229 91 + 198332218 CAGTGCAAAAATTATGGT--------AATCTGATAACTTATTTCTC-AAATGTTTTGTTGGTTAGTACTCTAGAATACTGAAACACACAGAGTG-GTCACA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20386527 91 - 85365473 CAGTTCAAAAATTATGGT--------AATCTGATCACTTATTTCTC-AAATGTTTTGTTGGTTAGTACTCTAGAATACTGAAACACATAGAGTG-GTTACA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16852531 91 + 184069350 CAGTGCAAAAATTATGGT--------AATCTGATAACTGATTTCTC-AAATGTTTTTTTGGTTAGTACTCTAGAATACTGAAACACATAGACTG-GTCACA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20902286 91 + 189454096 CAGTGCAAAAATTATGGT--------AATCTGATAACTGATTTCTC-AAATGTTTTTTTGGTTAGTACTCTAGAATACTGAAACACATAGAGTG-GTCACA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16492806 91 + 178775436 CAGTGCAAAAATTATGGT--------AATCTGATAACTGATTTCTC-AAATGTTTTGTTGGTTAGTACTCTAGAATACTGAAACACATAGAGTG-GTCACA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19975530 91 - 48547382 CAGTGCAAAAATTATGGT--------AATCTGATAACTGATTTCTC-AAATGTTTTGTTGGTTAGTACTCTAGAATACTGAAACACATAGAGTG-GTCACA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21336444 92 - 190850796 TAGTGCAAAAACAATGGT--------AATCTGATTGCTTATTTCTCAAAATTTTATTTTCGTTAGTACTCTAGAATACTGAAACACATGGAGTG-CTCACA i calJac3.chr3 C 0 C 0 s canFam3.chr3 3901246 100 - 91889043 CAGTGCAACAAATATGGTTAGCTCCCAACTTATTAACTTACTCCTC-GAATTTGTTGTTAATCGATACTCTCTACTATTGGAGCATATAAAATGAGTCACA i canFam3.chr3 C 0 I 4 e mm10.chr5 49312229 8 + 151834684 I a score=2223159.000000 s hg38.chr4_KI270790v1_alt 212926 755 + 220246 TGTGCCATGTATACTCTAAAtgtgttcctccaaaattcatgttaggatcaaacacccaatgtgatagtattaagacatgggacctttaagaaatgattaagtcatgaggactcttcctttctgaacaggaattgtgcccttatacaacgtttgaaggagtatgcctttctctcttctgtccttctaccatgtgaggacataatcttcattctttccacca--------tgtgaggacacagtcttcattcctcccaccatgtgaggacacagcaagaaagtactatcttagaaacagacagcagccctcaaaagacacaaaatcttctggtgccttggtcttggacttgccagcctccagaaccataaggagtaaattatatataatttatccaatctgtgttgtttt-gttacagcagcacaaacagaccaagacaATACCCTACATTTAAAATGGTTATTT--GTggccg--ggtgtggtggctcatgtctgtaatcctagcactgtgggaggccgaggtgggtagatcactggaggtcagaagttcaagatcagcctggccaacataacaagaactcatctttactaaaaatacaaaaattatccgggtatagtggtgctcacctgtaatcccagctactcaggaggctgagacacaagaatcacttgaacccaggaggcagaggttgcagtgagctgagaccacaccactgcattccagcctgggcaacagagcaagattccatctcaaaaaattaaaataaga s panTro4.chr4 21601910 755 + 193495092 TGTGCTATGTATACTCTGAAtgtgttcctccaaaattcatgttaggatcaaacacctaatgtgatagtattaagacatgggacctttaagaaatgattaagtcgtgaggactcttcctttctgaacaggaactgtgcccttatacaacgtttgaaggagtatgcctttctctcttctgtccttctaccatgtgaggacataatcttcattctttccacca--------tgtgaggatacagtcttcattcctcccaccatgtgaggacacagcaagaaggtactatcttagaaacagacagcagccctcaaaagacacaaaatcttctggtgccttggtcttggacttgccagcctccagaaccataaggagtaaattatatataatttatccaatctgtgttgtttt-gttatagcagcacaaacagaccaagacaATACCCTACATTTGAAATGGTGATTT--GTggcca--ggtgcggtggctcatgcctgtaatcctagcactgtgggaggccgaggtgggtagatcactggaggtcaggagttcaagatcagcctggccaacataacaagaactcatctttactaaaaatacaaaaattatccgggtatagtggtgctcacctgtaatcccagctactcaggaggctgagacacaagaatcacttgaacccaggaggcagaggttgcagtgagctgagaccacaccactgcattccagcctgggcaacagagcaagattccatctcaaaaaattaaaataaga i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21778320 755 + 198332218 TGGGCTATGTCTACTCTGAAtgtgttcctccaaaattcatgttaggatcaaacacccaatgtgacagtactaagacatgggacctttaagaaatgattaagtcatgaggactcttcctttctgaacaggaattgtgcccttatacaaggtttgagggagtatgcctttctctcttctgtccttctaccatgggaggacataatcttcattctttccacca--------tgtgaggacacagtcttcattcctcccgccgtgtgaggacacagcaagaaggtactatcttagaaacagacagcagccctcaaaagacagaaaatcttctggtgccttagtcttggacttgccagactccagaaccatacggagtaaattatatataatttatccaatctgtgttgtttt-gttatagcagcacaaacagaccaggacaATACCCTACATTTAAAATGGTTATTT--GTggccg--ggtgcggtggctcatacctgtaatcctagcaatgtgggaggccgaggtgggtagatcactggaggtcaggagttcaagatcagcctggccaacataacaagaacccgtctttactaaaaatacaaaaattatccgggtatagtggtgctcacctgtaatcccagctactcgggaggctgaggcatgagaatcacttgaacccaggaggcagagtttgcagtgagctgagaccacaccactgcattccagcctgggcaacagagcaagactccatctcaaaaaaTTTAAATAAGA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20386618 755 - 85365473 TGTGCTATGTATACTCTGAAtgtgttcctccaaaattcatgttaggatcaaacacccaatgtgatagtattaacacatgggacctttaagaaatgattaagtcgtgaggactcttcctttctgaaaaggaattgtgcccttatacaaggtttgaaggagtatgcctttctctcttctgtccttctaccatgtgaggacataatcttcattctttccacca--------tgtgaggacacagtcttcactcctcccaccaagtgaggacacagcaagaaggtactatcttagaaacagacagcagccctcaaaagacacaaaatcttctggtgccttggtcttggacttgccagcctccagaaccatacagagtaaattatatataatttatccaatctgtgttgtttt-gttatagcagcacaaacagaccaagacaATACCCTACATTTAAAATGGTTATTT--GTggcca--ggtgcagtggctcatgcctgtaatcctagcactgtgggaggccgaggtgggtagatcactggaggtcaggagttcaagatcagcctggccaacataacaagaacccatctttattaaaaatgcaaaaattatccgggtatggtggtgctcgcctgtaatcccagctactcaggaggctgaggcacgagaatcacttgaacccaggagccagaggttgcagtgagctgagaccacaccactgcattccagcctgggcaacagagcaagattctgtctcaaaaaattaaaacaaga i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16852622 752 + 184069350 TGTGCTATGTATCCTCCAAAtgtgttcctccaaaattcatgttgggatcaaacacccaatgtgatagtattaagacatgggacttttaagagatgattaagtcatgaggactcttcctttctaaacaggaatagtgcccttatacaaggcttgagggagtatgcttttctctcttctgtccttctaccatgtgaggacacaatcgtcatttcttccaccc--------tgtgaggacacagtcttcattcatcccaccatgtgaggacacagcaagaaggtactaacttggaaacagacagcagccctcaaaagacacaaaatcttctggtgccttggtcttggacttgccagcctccagaaccataaggagtaaattatatgtaactcatccaatttgtgtcatttttgttatagcagcacaa----accaagacaATACCCTGCATTTAAAATGGTTATTT--GTggcca--ggtgcagtggctcatgcctgcaatcctagcactgtgggaggccgaggtgggtagatcactggaggtcaggagttcaagataagcctggccaacataacaagaacctgtccttactaaaaattcaaaaattatccaagtatggtggtgctcacttgtaatcccagctactcaggaggctgaggcaggagaatcacttgaacccaggaggcagaggttacagtgagctgagactgcaccactgcattccagtctgggtgacagagcaagactctatctcaaaaaaTTAAAATAATG i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20902377 752 + 189454096 TGTGCTATGTATTCTCCAAAtgtgttcctccaaaattcatgttgggatcaaacacccaatgtgatagtattaagacatgggacttttaagagatgattaagtcatgaggactcttcctttctaaacaggaatagtgcccttatacaaggcttgagggagtatgcttttctctcttctgtccttctaccatgtgaggacacaatcgtcatttcttccaccc--------tgtgaggacacagtcttcattcatcccaccatgtgaggacacagcaagaaggtactaacttggaaacagacagcagccctcaaaagacacaaaatcttctggtgccttggtcttggacttgccagcctccagaaccataaggagtaaattatatgtaactcatccaatttgtgttatttttgttatagcagcacaa----accaagacaATACCCTGCATTCAAAATGGTTATTT--GTggcca--ggtgcagtggctcatgcctgtaatcctagcactgtgggaggccgaggtgggtagatcactggaggtcaggagttcaagataagcctggccaacataacaagaacctgtccttactaaaaattcaaaaattatccaagtatggtggtgctcacttgtaatcccagctactcaggaggctgaggcaggagaatcacttgaacccaggaggcagaggttacagtgagctgagactgcaccactgcattccagtctgggtgacagagcaagactctatctcaaaaaaTTAAAATAATG i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16492897 752 + 178775436 TGTGCTATGTATCCTCCAaatgtgttcctccaaaattcatgttgggATCAAAcacccaatgtgatagtattaagacaTGGGACTTTTAAgagatgattaagtcatgaggactCTTCCTTTCTAAACAGGAATAGTGCCCTTATATAAGGCTTGAGGGAGTatgcttttctctcttctgtccttctaccatgtgaggacacaatctTCATTTCctccaccc--------tgtgaggacacagtctTCATTCatcccaccatgtgaggacacagcaagaaggtactAACTTGGAAACAGACAGCAGCCCTCAAAAGACACAAAATCTTCTGgtgccttggtcttggacttgccagcctccagaaccataaggaGTAAATTATAAGTAATTCATccaatttgtgttgtttttgttatagcagcacaa----accaAGACAATATCCtacatttaaaatggttattt--gtggcca--ggtgcagtggctcatgcctgtaatcctagcactgtgggaggccgagctgggtagatcactggaggtcaggagttcaagataagcctggccaacataacaagaacctgtccttactaaaaatacaaaaattatccaggtatagtggtgctcacttgtaatcccagctactgaggaggctgaggcaggagaatcacttgaacccaggaggcagaggttacagtgagctgagactgcaccactgcattccagtctgggtgacagagcaagactccatctcaaaaaattaaaataata i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19975621 760 - 48547382 TGTGCTATGTATCCTCCAAAtgtgttcctccaaaattcatgttgggatcaaacacccaatgtgatagtattaagacatgggacttttaagaggtgattaagtcatgaggactcttcctttctaaacaggaatagtgcccttatacaaggcttgagggagtatgcttttctcccttctgtccttctaccatgtgaggacacaatcatcatttcttccaccctgtgtccatgtgaggacacagtcttcattcatcccaccatgtgaggacacagcaagaaggtactaacttggaaacagacagcagccctcaaaagacacaaaatcttctggtgccttggtcttggacttgccagcctccagaaccatgaggagtaaattatatgtaactcatccaatttgtgttattttggttatagcagcacaa----accaagacaATACCCTGCATTTAAAATGGTTATTT--GTggcca--ggtgcagtggctcatgcctgtaatcctagcactgtgggaggccgaggtgggtagatcactggaggtcaggagttcaagataagcctggccaacatatcaagaacctatccttactaaaaattcaaaaattatccaggtatggtggtgctcacttgtaatcccagctactcaggaggctgaggcaggagaatcacttgaacccaggaggcagaggttacagtgagctgagactgcaccactgcattccagtctgggtgacaaagcaagactccatctcaaaaaaTtaaaataata i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21336536 726 - 190850796 TGTGCTATAtatactctgaatgtgttcctccaaaattcatgttggaatcaaacacccaatgtgatgatagtaagacatgggacctttaagagatgattaggtcctgaggagtcttcctttctgaaaaggaatagagcctttacacaaggcttgaggggggatgcttttctctcttcattccttccacca---------------------------------------tgtgaggacacagtcttcattccttccactatgtgaggacacagcaagaa-gtaccatcttggaagcagacagcagccctcaaaagacacaaaatcttctggtgccttggtcttggacttgccagcctcctgaaccataaggagtaaattacatataatgtattcaaactgtattgtttt-gttatagaagcacaaacagaccaagacaATACCGTACATTTAAAATGGTTATTTTAATAACCACCTGAgcggtggctcaggcctgtaatcccagcactgtgggaggccaagatgggtagat-actggaggtcaggaatacaagaccagcctggccaacataacaaaaacccttctttactaaaaatacaaaaattagctgggcatggtggtgctcacctgtaatcccagctactcaggaggctgaggcaggaaaatcacttcaacccaggaggcagaggttgcagtcagttgagactgcaccactgcattccagcctgggcaacacagcaagactccatctcaaaaaatgaaaataata i calJac3.chr3 C 0 C 0 e mm10.chr5 49312229 8 + 151834684 I e canFam3.chr3 3901346 4 - 91889043 I a score=333522.000000 s hg38.chr4_KI270790v1_alt 213681 110 + 220246 ataataag---aataaataaaatGGTTA-TTTGCCTTTGTTCAGAATATTTTTCAGAACAGCAGCCTACACACAAGCCACGACCTAAAATGCAACTAATAAACAGGCCAGGCAT-- s panTro4.chr4 21602665 110 + 193495092 agaataag---aataaaTAAAATGGTTA-TTTGCCTTTGTTCAGCCTATTTTTCAGAACAGCAGCCTACACACAAGCCACGACCTAAAATGCAACTAATAAACAGGCCAGGCAT-- i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21779075 109 + 198332218 AGAATAAG---AAT-AATAAAAGGGTTA-TTTGCCTTTGTTCAGCCTATTTTTCAGAACAGCAGCCTACACACAAGCCACGACCTAAAATGCAACTAATAAACAGGCCAGACAT-- i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20387373 110 - 85365473 ataagaag---aataaaTAAAATGGTTA-TTTGCCTTTGTTCAGCCTATTTTTCAGAACAGCAGCCTACACACAAGCCATGACCTAAAATGCAACTAATAAACAGGCCAGGCAT-- i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16853374 114 + 184069350 AGAATAAGAACAATAAATAAAATGGTTATTTTACCTTTGTTCAGCCTATTTTTCAGAACAGCAGCCTACACACAAGCCACAACCTAAAATGCAACTAATAAACAGGCCAGGTAT-- i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20903129 114 + 189454096 AGAATAAGAACAATAAATAAAATGGTTATTTTACCTTTGTTCAGCCTATTTTTCAGAACAGCAGCCTACACACAAGCCACAACCTAAAATGCAACTAATAAACAGGCCAGGTAc-- i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16493649 114 + 178775436 agaataagaacaataaataataTGGGTATTTTACCTTCGTTCAGCCTATTTTTCAGAACAGCAGCCTACACACAAGCCATAACCTAAAATGCAACTAATAAACAGGCCAGGCAT-- i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19976381 114 - 48547382 agaataagaacaataaataaaatGGTTATTTTACCTTTGTTCAGCCTATTTTTCAGAATAGCAGCCTACACACAAGCCACAACCTAAAATGCAACTAATAAACAGGCCAGGCAT-- i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21337262 107 - 190850796 ataat------aataaataaaatCGTTA-TTTGCCTTTGTTCAGCCCGTTTTTCAGAATGGCAGCCTACACACAAGCCACAATGTGAAATGTAACTAATAAAGAGGCCAGGCAT-- i calJac3.chr3 C 0 C 0 s canFam3.chr3 3901350 103 - 91889043 ATATTAAA---AAT-----AAGTGGTCA-TTTGTCTTTGTTCAGCATGCTTTGCAGAATGGCAGACTACAGA-AAGCTGCA---TGGCGTGTAACCAGTGAAGAGGCTGGGCAGGC i canFam3.chr3 I 4 C 0 e mm10.chr5 49312229 8 + 151834684 I a score=5476785.000000 s hg38.chr4_KI270790v1_alt 213791 1664 + 220246 ttcttgcacactttttcac-atagtatctaatactacactgtactagttttgctcctacccaaatgacttacactttctgtcttctggactcctgtctt-----tcaaatctcagcct-------cttttcttctccat-ctacacctgctttccaggtaattccatctcagtaaacaatgacaa-tttccaaat---ttaaatctccagcctgagtctcttccctgaactctagactcatgtatcaacacagccaattggatgtataaggagcatctcaaaactaacc------aaactccaaa--tctcctttcctcaactctgttccat--------------aaagtctttcttatctctgt-aaatggcaatacccttctcccaggtgctcaggt-----taagtcaaa--taaggcgttttcctc-ccactccacatcgagtccatcagcaaatggtgttggc-----------------------tcaatgttcataattgaagtacttcccac------------------------------------------------------cactgccaccccagaactgcaggccaagctgctgtgatttatggcctatttattgcagtagcctcttcacta-ggtgtctgcttctgcccttgctgccttacagtctagtcttaatgcaataaccagagtgatccttttaaaacataattcaaatcatgccacacctctgctcaagtctctccaatgactacccattccatttgaggaaaaagcacttaaaccacccacatcatttttttctctgtttcctc----------------------------------------------tctgacctcatctgaactactggcctcttcttcactctggatcacacagatatgatgctcttttaaaagactca--acatgccttcctca-ggagtttgcctttgaggatcctcccctggggaag--cccttcttaaggagatctctatgtctcattgtcttacca-------cccctcaaatcttagctcaagattcaacttttcaatgagactttccaagaccaccctattaaaaataaatttcctcacactggattcttctctttcccttctttggtttattt-tactccacagTTTCTTCCAATATGATGCCACATATATACACACTCATGCATTCGTGTGAGCATGCACACATGCACGCTTGTTCCTTGCATTTATTTCTTGGCAAATAATGTCTCTTTGCAAATAATGA---TAtctctcctccagaacctaaactccatga-tgcaca-gacttttatctttgtgctaagtgcttaaatctgagcacctTCTACAGGGTTTTCCCTACCCATACT-GAATACAA--------TTTTAA-----TGAAAAA--AATACAGATGTATAT---TTGAATAGGAATCATTTGGGGTCTAGGTTGCCTTT--TGCTTAGTC----ACTTTCCACCAACAATATCCTACTAGAC---ACAGAA-TC----TTCTTATTTCATTATTAGAAACACTTTTGCATTCAGTTTACCAGGCTTAACATAAAT------------------------------------------------------------------------TAAAAAGGAACAAGGAATACACCAGTGACTACTTAGA--------------------------------ATAGATGCCA-------------------CTATAAATTTTCTGGCCCTAGTACTAATCTAGGTAATATAATTTGTTGG-----AAGCATATTATTATTCGAGAAGCAATTATTTCA-GCTAAGATGCAAGACTTCTGTGACGAGAATTTCACCATGTC-CTTTCACATAAATGCACAGT--AAAAGATTTTTGCTGTGTTCTATGGAGCCTCAAGT----------GTTTTT---------TAAATGAAAAA--------GATGCATGAAATAAATTAGTAATACTTCTGTGAATGAAAAGAATT s panTro4.chr4 21602775 1664 + 193495092 ttcttgcacactttttcac-atagtatctaatactacactgtactagttttgctcctacccaaatgacttacactttctgtcttctggactcctgtctt-----tcaaatctcagcct-------cttttcttctccat-ctacacccactttccgggtatttccatctcagtaaacactgacaa-tttccaaat---ttaaatctccagcctgagtctcttccctgaactctagactcatgtatcaacacagccaattggatgtataaggagcatctcaaaactaacc-aaacaaaactccaaa--tctcctttcctcaactctgttccat--------------aaagtctttcttatctctgt-aaatggcaatacccttctcccaggtgctcaggt-----taagtcaaa--taagcctttttcctc-ccactccacatcgagtccatcagcaaatggtgttggc-----------------------tcaatgttcataattgaagtacttcccac------------------------------------------------------cactgccaccccagaactgcaggccaagctgctgtgatttatggcctatttattgcagtagcctcttcacta-ggtgtctgcttctgctcttgctgccttacagtctagtcttaatgcaataaccagagtgatccttttaaaacataattcaaatcatgccacacctctgctcaagtctctccaatgactacccattccatttgaggaaaaagcacttaaaccacccacatcatttttttctctgtttcctc----------------------------------------------tctgacctcatctgaactactggcctcttcttcactctggatcacacagatgtgatgctctt----aagactca--acatgccttcctca-ggagtttgcctttgaggatcctcccctggggaag--cccttcttaaggagatctctatgtctcattgtcttacca-------cccctcagatcttagctcaagattcaacttttcaataagactttccaagaccaccctattaaaaataaatttcctcacactggattcttctctttcccttctttggtttattt-tactccacagTTTCTTCCAATATGATGCCACATATATACACACTCATGCATTCTTGTGAGCATGCACACATGCACGCTTGTTCCTTGCATTTATTTCTTGGCAAATAATGTCTCTTTGCAAATAATGA---tctctctcctccagaacctaaactccatga-tgcaca-gacttttatctttgtgctaagtgcttaaatctgagcacctTCTACAGGGTTTTCCCTACCCATACT-GAATACAA--------TTTTAA-----TGAAAAA--AATACAGATGTATAT---TCGAATAGGAATCATTTGGGGTCTAGGTTGCCTTT--TGCTTAGTC----ACTTTCCACCAACAATATCCTACTAGAC---ACAGAA-TC----TTCTTATTTCATTATTAGAAACACTTTTGCATTCAGTTTACCAGGCTTAACATAAAT------------------------------------------------------------------------TAAAAAGGAACAAGGAATACACTAGTGACTACTTAGA--------------------------------ATAGATGCCA-------------------CTATAAATCTTCTGGCCCTAGTACTAATCTAGGTAATATAATTTGTTGG-----AAGCATATTACTATTCTAGAAGCAGTTATTTCA-GCTAAGATGCAAGACTTCTGTGACGAGAATTTCACCATATC-CTTTCACATAAATGCACAGT--AAAAGATTTTTGCTATGTTCTATGGAGCCTCAAGT----------GTTTTT---------TAAATGAAAAA--------GACGCATGAAATAAA-TAGTAATACTTCTGTGAATGAAAAGAATT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21779184 1693 + 198332218 ttcttgcacactttttcac-atagtatcgaatactacactgtactagttttgctcctacccaaatgacttacactttctgtcttctggactcctgtctt-----tcaaatatcagcct-------cttttcttctccat-ctacacacactttccaggtaattccatctcagtaaacactgacaa-tttccaaat---ttaaatctctagcctgagtctcttccctgaactctagattcatatatcaacacagccaattggatgtataaggagcatttcaaaactaacc-aaaccaaactccaaa--tctcctttcctcaactctgttccac--------------aaagtctttcttatctctgt-aaatggcaatacccttcttccaggtgctcaggt-----taagtcaaa--taagcctttttcctc-ccactccacatcgaatccatcagcaaatggtgttggctcaatgttcataattgaagtaattcaatgttcataattgaagtacttcccac------------------------------------------------------cactgccaccccacaactgcaggccaagctgctgtgatttatggcctatttattgcagtagcctcttcacta-ggtgtctgcttctgcccttgctgccttacagtctagtctttatgcaataaccagagtgatccttttaaaacataattcaaatcatgccacacctctgctcaagtctctccaatgactacccattccattagaggaaaaagcacttaaaccacccacatcatttttttctctgtttcctc----------------------------------------------tctgacctcatctgaactactggccttttcttcactctggatcacacagatgtgatgctcttttaaaagactca--acatgccttcctca-ggagtttgcctttgaggatcctcccctggggaag--cccttcttaaggagatctctatgtttcattgtcttacca-------cccctcagatcttagctcaagattcaacttttcaataagactttccaagaccaccctattaaaaataaatttcctcacactggattcttctctttcccttctttggtttattt-tactccatagtttcctccaatatgatgccacatatatatacactcatgcatttgtGTGCGCATGCACACACGCACGTTTATTTCTTGCATTTAATTCTTGGCAAATAATGTCTCTTTGAAAATAATGA---tctctctcctccagaacctaaactccatga-tgcaca-gacttttatctttgtgctaagtgcttaaatctgagcacctTCTACAGGGTTTTCCCTACCCATACT-GAATACaa--------ttttaa----ttaaaaaa--aatataGATGTATAT---CTGAATAGGAATCATTTGGGGTCTAGGTTGCCTTT--TGCTTAGTC----ACTTTCCACCAACAATATCCTACTAGAC---AAAGAA-TC----TTCTTATTTCATTATTAGAAACACTTTTGCATTTAGTTTACCAGGCTTAACGTAAAT------------------------------------------------------------------------TAAAAAGGAACAAAGAATACACTAGTGACTACTTAGA--------------------------------ATAGATGCTG-------------------CTATAAATCTTCTGGACCTAGTACTAACCTAGGTAATATAATTTGTTGG-----AAGCATATTATTATTCTAGAAGCAATTATTTCA-GGTAAGATGCAAGACTTCTGTGACAAGAATTTCACCATGTC-CTTTCACATAAATGCACAGT-AAAAAGATTTTTGCTATGTTCTATGGAGCCTCAAGT----------GTTTTT---------TAAATGAAAAA--------GATGCACGAAATAAA-TAGTAAAACTTCTGTGAATGAAATGAATT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20387483 1663 - 85365473 tttttgcacactttttcac-atagtatctaatactacgctgtactagttttgctcctacccaaatgacttacactttctgtcttctggactcctgtctt-----tcaaatctcagcct-------cttttcttctccat-ctacacccactttccaggtaattccatctcagtaaacactgacaa-tttccaaat---ttaaatctctagcctgagtctcttccctgaactctagactcacatatcaacacagccaattggatgtataaggagcatctcaaaactaacc-aaaccaaactccaaa--tctcctttcctcaactctcttccac--------------aaagtctttcttatctctgt-aaatggcaatacccttcttccaggtgctcaggt-----taagtcaaa--taagcctttttcctc-caactccacatcaaatccatcagcaaatggtgttggc-----------------------tcaatgttcataattgaagtacttcccac------------------------------------------------------cactgccaccccacaactgcaggccaagctgctgtgatttacggcctatttaatgcagtagcctcttcactc-ggtgtctgcttctgcccttgctgccttaccatctagtcttaatgcaataaccagagtgatccttttaaaacataattcaaatcatgccacacctctgctcaagtctctccaatgactacccattctattcgaggaaaaagcacttaaaccacccccatcatttttt--tctgtttcctc----------------------------------------------tctgacctcatctgaactactggcctcttcttcactctggatcacacagatgtgatgctcttttaaaagactca--acatgccttcctca-ggagtttgcctttgaggatcctcccctggagaag--cccttcttaaggagatctctgtgtctcattgtcttacca-------cccctcagatcttagctcaagattcaacttttcaataagactttccaaggccaccctattaaaaacaaatttcctcacactggattcttctctttcccttctttggtttattt-tactccatagTTTCTTCTAATATGATGCCACAAATATACACACTCATGCATTCATGTGCGCATGCACACACACACGCTTGTTTCTTGCATTTATTTCTTGGCAAATAATGTCTCTTTGCAAATAATGA---tctctctcctccagaacctaaactccatga-tgcata-gacttttatctttgtgctgagtgctttaatctgagcacctTCTACAGAGTTTTCCCTACCCATACT-GAATACAA--------TTTTAA-----TTTAAAA--AACATAGATGTATAT---CTGAATAGGAATCATTTGGGGTCTAGGTTGCCTTT--TGCTTAGTC----ACTTTCCACCAACAATATCCTACTAGAC---AAAGAA-TC----TTCTTATTTCATTATTAGAAACACTTTTGCATTTAGTTTACCAGGCTTAACATAAAT------------------------------------------------------------------------TAAAAAGGAACAAGAAATACACTAGTGACTACTTAGA--------------------------------ATAAATGCCG-------------------CTATAAACCTTCTGGCCCCAGTACTAACCTAGGTAATATAATTTGTTGG-----AAGCATATTATTATTCTAGAAGCAATTATTTCA-GGTAAGATGCAAGACTTCTGTGACAAGAATTTCACCATGTC-CTTTCATATAAATGCACAGT-AAAAAGATTTTTGTTATGTTCTATGGAGCCTCAAGT----------GTTTTT---------TAAATGAAAAA--------GATGCATGAAATAAA-TAGTCATGCTTCTGTGAATGAAAAG---- i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16853488 1734 + 184069350 ttcttg--cactttttcac-atagtatctaccactacactgtactagttttgctcctacccaaatgacttacactttctatcttctggactcctgtctt-----tcaaatctcagcctcagaccgcttttcttctccat-ctacacccactttctaggtaattccatcccagtaaacactgataa-tttccaaat---ttaaatatccagcctgagcctcttccctgaacttgagacttatacatcaacatagccaactggatgcataaggagcatttcaaaactaacc-aaaccaaactccaaatctctccttgcctcaactctgttccacagataagaaagataagagtctttcttatctctgc-aaatggcaatacccttcttccaggtgctcaggt-----taagttaaa--taaggctttttcttc-caaccccacatcgaatccatcagcaaatggtgttggc-----------------------tcaatgttcaaaactgaagtacttcccac------------------------------------------------------cactgccaccccacaactgctggccaagctgctgtgatttatggcctatttattgcagtaacctcttcactg-ggtgtctgcttctgcccttgctgccttacagtctattcttaatgcaacaaccagagtgatcctcttaaaacataattcaaatcatgccacacctctgctcaagtctctccaatgactacccattccattcaaggaaaaagcacttaaaccacccacgtcatttttttctctgtttcctctctgacttcatctgcacttgatcttggccaaaaggccgagaagcgatctgacctcatctgaactactggcctcttcttcactctggatcacatagatgtgatgctcttttaaaagactcc--atatgccttcctca-ggagtttgcctttgaggatcctcccctggggaag--cccttcttaaggagatctctatgtctcattgtcttacca--------ccttcagctcttagctcaagattcaacttttcaataaggctttccaagaccaccctattaaaaacaaatttcatcacactggattcttgtttttcccttctttggtttattt-tactccatagTTTCTTCCAATATGATGCCACACATATACACACTCATACATT-GTGTGCGCATGCACATGCACATGCTTGTTTCTGGCATTTATTTCTTGGCAAATAATGCCGCTTTGCAAATAATGA---tttctctcctccagaacctaaattccatga-tgcaca-ggcttttatctttgtgctgagtgctttaatctgagcacctTCCGCAGGTTTTTCCCTACCCATACT-GAATACAA--------TTTTAT----TTTAAAAA--ATTACATATGTATAC---CTCAATAGGAATCATTTGGGGT-TAGGTTGCCTTT--TGCTTAGTC----ACATTCCACCATCAATATCCTACTAGAC---ACAGAA-TC----TTCTTATTTCATTATTAGAAACACTTTTGCATTTAATTTACCAGGCTTAACATAAAT------------------------------------------------------------------------TAAAAAGGAACAAGGAATACACTAGTGACGACTTAGA--------------------------------ATAGACGCTG-------------------CTATAAATCTTCTGGCCCTAGTACTAACCTAGGGAATATAATTTGTTGG-----AAGCACATTATTATTCTAGAAACAATTATTTCA-GGTAAGATGCAAGACTTCTGTGACAAAAATTTCACCATGTC-CTTTCACACAAATGCACAGT-AAAAAGATTTTTGTTATATTCTATGGAGCCTCCAGT----------GTTTTT---------TAAATGAAAAA--------GATGCATGAAATAAA-TAGTAATACTTCTGTGAATGAAAAGAATT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20903243 1732 + 189454096 ttcttg--cactttttcac-atagtatctaccactacactgtactagttttgctcctacccaaatgacttacactttctatcttctggactcctgtctt-----tcaaatctcagcctcagaccgcttttcttctccat-ctacacccactttctaggtaattccatcccagtaaataccgacaa-tttccaaat---ttaaatatccagcctgagcctcttccctgaacttgagacttatacatcaacatagccaactggatgcataaggagcatttcaaaactaacc-aaaccaaactccaaatctctccttgcctcaactctgttccacagataagaaagataagagtctttcttatctctgc-aaatggcaatacccttcttccaggtgctcaggt-----taagttaaa--taaggctttttcttc-caaccccacatcgaatccatcagcaaatggtgttggc-----------------------tcaatgttcaaaactgaagtacttcccac------------------------------------------------------cactgccaccccacaactgctggccaagctgctgtgatttatggcctatttattgcagtaacctcttcactg-ggtgtctgcttctgcccttgctgccttacagtctattcttaatgcaacaaccagagtgatcctcttaaaacataattcaaatcatgccacacctctgctcaagtctctccaatgactacccattccattcaaggaaaaagcacttaaaccacccacgtcatttttttctctgtttcctctctgacttcatctgcacttgatcttggccaaaaggccgagaagcgatctgacctcatctgaactactggcctcttcttcactctggatcacatagatgtgatgctcttttaaaagactcc--atatgccttcctca-ggagtttgcctttgaggatcctcccctggggaag--cccttcttaaggagatctctatgtctcattgtcttacca--------ccttcagctcttagctcaagattcaacttttcaataaggctttccaagaccaccctattaaaaacaaatttcatcacactggattcttgtttttcccttctttggtttattt-tactccatagTTTCTTCCAATATGATGCCACACATAT--ACACTCATACATT-GTGTGCGCATGCACACGCACATGCTTGTTTCTGGCATTTATTTCTTGGCAAATAATGCCACTTTGCAAATAATGA---tttctctcctccagaacctaaattccatga-tgtaca-ggcttttatctttgtgctgagtgctttaatctgagcacctTCCGCAGGTTTTTCCCTACCCATACT-GAATACAA--------TTTTAA----TTTAAAAA--ATTACATATGTATAC---CTCAATAGGAATCATTTGGGGT-TAGGTTGCCTTT--TGCTTAGTC----ACATTCCACCATCAATATCCTACTAGAC---ACAGAA-TC----TTCTTATTTCATTATTAGAAACACTTTTGCATTTAATTTACCAGGCTTAACATAAAT------------------------------------------------------------------------TAAAAAGGAACAAGGAATACACTAGTGACGACTTAGA--------------------------------ATAGACGCTG-------------------CTATAAATCTTCTGGCCCTAGTACTAACCTAGGGAATATAATTTGTTGC-----AAGCACATTATTATTCTAGAAACAATTATTTCA-GGTAAGATGCAAGACTTCTGTGACAAAAATTTCACCATGTC-CTTTCACACAAATGCACAGT-AAAAAGATTTTTGTTATATTCTATGGAGCCTCCAGT----------GTTTTT---------TAAATGAAAAA--------GATGCATGAAATAAA-TAGTAATACTTCTGTGAATGAAAAGAATT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16493763 1731 + 178775436 TTTTTG--CACTTTTTCAC-ATAGTATCTACTACTACACTGTACTAGTTTTGCTCCTACCCAAATGACTTACACTTTCTATCTTCTGGATTCCTGTCTT-----TCAAATCTCAGCCTCAGACCGCTTTTCTTCTACAT-CTACACCCACTTTCCAGGTAATTCCATCCCAGTAAACTCTGACAA-TTTCCAAAT---TTAAATATCCAGCCTGAGTCTCTTCCCTGAACTTGAGACTTATACATCGACATAGCCAACTGGATGCATAAGGAGCATTTCAAAACTAACC-AAACCAAACTCCAAATCTCTCCTTGCCTCAACTCTGTTCCACAGATAAGAAAGATAAGAGTCTTTCTTATCTCTGC-AAATGGCAATACCCTTCTTCCAGGTGCTCAGGT-----TAAGTTAAA--TAAGGCTTTTTCTTC-CAACTCCACATCGAATCCATCAGCAAATGGTGTTGGC-----------------------TCAATGTTCAAAACTGAAGTACTTCCCAC------------------------------------------------------CACTGCCACCCCACAACTGCTGGCCAAGCTGCTATGATTTATGGCCTATTTATTGCAGTAACCTCTTCACTG-GGTGTCTGCTTCTGCCCTTGCTGCCTTACAGTCTATTCTTAATGCAACAACCAGAGTGATCCTCTTAAAACATAATTCAAATCATGCCACACCTCTGCTCAAGTCTCTCCAATGACTACCCATTCCATTCAAGGAAAAAGCACTTAAACCAcccatgtcatttttttctctgtttcctctctgACTTCATCTGCACTTGATCTtggccaaaaggccgagaagcgatCTGACCTCATCTGAACTACTGGCCTCTTCTTCACTCTGGATCACACAGATGTGATGCTCTTTTAAAAGACTCC--ATATGCCTTCCTCA-GGagtttgcctttgaggatcctcCCCTGGGGAAG--CCCTTCTTAAGGAGATCTCTATGTCTCATTGTCTTACCA--------CCTTCAGCTCTTAGCTCAAGATTCAACTTTTCAATAAGGCTTTCCAAGACCAccctattaaaaacaaatttcatcaCACTGGATTcttgtttttcccttctttggtttattt-tactCCATAGTTTCTTCCAATATGAtgccacacatatacacactcatacact-gtGTGCGCATGCACACGCACATGCTTGTTTCTGGCATTTATTTCTTGGCAAATAATGCCGCTTTGCAAATAATGA---TTTCTCTCCTCCAGAACCTAAACTCCATGA-TGCACA-GGCTTTTATCTTTGTGCTGAGTGCTTTAATCTGAGCACCTTCTGCAGGGTTTTCCCTACCCATAct-gaatacaa--------ttttaa----ttttaaaa--attacatatgtatac---ctcaATAGGAATCATTTGGGGT-TAGGTTGCCTTT--TGCTTAGTC----ACTTTCCACCATCAATATCCTACTAGAC---ACAGAA--------TCTTATTTCATTATTAGAAACACTTTTGCATTTAATTTACCAGGcttaacataaat------------------------------------------------------------------------taaaaaggaaCAAGGAATACACTAGTGACGACTTAGA--------------------------------ATAGACGCTG-------------------CTATAAATCTTCTGGCCCTAGTACTAACCTAGGGAATATAATTTGTTGG-----AAGCACATTATTATTCTAGAAACAATTATTTCA-GGTAAGATGCAAGACTTCTGTGACAAGAATTTCACCATGTC-CTTTCACACAAATGCACAGT-AAAAAGATTTTTGTTATATTCTATGGAGCCTccagt----------gttttt---------taaatgaaaaa--------gatgcATGAAATAAA-TAGTAATACTTCTGTGAATGAAAAGAATT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19976495 1732 - 48547382 ttcttg--tactttttcac-atagtatctaccactacactgtactagttttgctcctacccaaatgacttacactttctatcttctggactcctgtctt-----tcaaatctcagcctcagaccacttttcttctccat-ctacacccactttccaggt-attccatcccagtaaacactgacaa-ttttcaaat---ttaaatatccagcctgagcctcttccctgaacttgagacttatacatcaacatagccaactggatgcataaggaacatttcaaaactaacc-aaaccaaactccaaatctctccttgcctcaactctgttccacagataagaaagataagagtctttcttatctctgc-aaatggcaatacccttcttccaggtgctcaggt-----taagttaaa--taaggctttttcttc-caactccacatcgaatccatcagcaaatggtgttggc-----------------------tcaatgttcaaaactgaagtacttcccac------------------------------------------------------cactgccaccccacaactgctggccaagctgctgtgatttatggcctatttattgcagtaacctcttcactg-ggtgtctgcttctgcccttgctgccttacagtctattcttaatgcagcaaccagagtgatcctcttaaaacataattcaaatcatgccacacctctgctcaagtctctccaatgactacccattccattcaaggaaaaagcacttaaaccacccacggca-ttttttctctgtttcccctctgacttcatctgcacttgatcttggccaaaaggccgagaagcgatctgacctcatctgaactactggcctcttcttcactctggatcacacagatgtgatgctcttttaaaagactcc--atatgccttcctca-ggagtttgcctttgaggatcctcccctggggaag--cccttcttaaggagatctctatgtctcattgtcttacca--------ccctcagctcttagctcaagattcaacttttcaataaggctttccaagaccaccctattaaaaacaaatttcatcacactggattcttctttttcccttctttggtttattt-tactccatagTTTCTTCCAATATGATGCCACACATATACACACTCACACATT-GTGTGCGCATGCACACGCACATGCTTGTTTCTGGCATTTATTTCTTGGCAAATAATTCCGCTTTGCAAATAATta---tttctctcctccagaacctaaactccatga-tgcaca-ggcttttatctttgtgctgagtgctttaatctgagcacctCCCGCAGGGTTTTCCCTATCCATACT-GAATACAA--------TTTTAA----TTTAAAAA--ATTACATATGTATAC---CTCAATAGGAATCATTTGGGGT-TAGGTTGCCTTT--TGCTTAGTC----ACTTTCCACCATCAATATCCTACTAGAC---ACAGAA-TC----TTCTTATTTCATTATTAGAAACACTTTTGCATTTAATTTACCAGGCTTAACATAAAT------------------------------------------------------------------------TAAAAAGGAACAAGGAATACACTAGTGACGACTTAGA--------------------------------ATAGACGCTG-------------------CTATAAATCTTCTGGCCCTAGTACTAACCTAGGGAATATAATTTGTTGG-----AAGCACATTATTATTCTAGAAACAATTATTTCA-GGTAAGATGCAAGACTTCTGTGACAAGAATTTCACCATGTC-CTTTCACACAAATGCACAAT-AAAAAGATTTTTGTTATATTCTATGGAGCCTCCAGT----------GTTTTT---------TAAATGAAAAA--------GATGCATGAAATAAA-TAGTAATACTTCTGTGAATGAAAAGAATT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21337369 1659 - 190850796 ttcttgcacactttttcac-atggtatctaatactacactgggctagtcttgatcctacccaaatgac-tatgctttctgtcttcgggactcctgtctt-----tcaaatctcagtctcagcccccttttcttctccat-gtataccccctttccaggtaatttcatcccaggaaacattgac-a-ttttcaaac---ttaaatatccagcctgagtctcttccctgaactctagactcatatgtcaacatagccaactggatttataaggagcatctcaaaagtaacc-aaaccaaactccaaatctctccttgcctcaactctgttccac--------------agagtc-ttatcatccatgt-aaatgccaatacccttcttccaggtgctcaggt-----taaatcaaa--taagctttttttctc-ccactccacatcgaatccatcagcaaataatgttggc-----------------------tcaatgttcgaaattaaagtacttcctac------------------------------------------------------cactgccaccccacaactgcaggcgaagctgctgtgatttatcacctatttattgcagtagcctcttcacag-ggtgt-------------------cttacagtctattcttaatgcaacaaccagagtgatccttttaaaacataattcaaatcatgccgcacctctgctcaggttgctccagtgacaaaccattccatttagagaaaaagcacttaacccacccacatcatttgtttctctgattcctc----------------------------------------------tctgatctcatctggacaactggcctcttctctattctggatcacacagatgtgatgctcttttgcaagactca--acatgcctttctca-tgagtttgcctttgagggtcctccacttg-gaag--cccttcttaaggacatctccatgtctcattgtcttccta--------ccctcagatcttagcttacaattcaacttttcaataagggtttccaagaccaccttattaaaaataaatctcctcacactagattcttct-tttcctttatttggtttattt-tactccatagTTTCTTCCAATATAATGCCACTCATATACACACTCATGCGTTCGTGTGCACGTGCACATACACAGTCTTGTTTCTTGCATTTATTTGCTGGCAAATTATGTCTCTTTGCAAATATTGATATtctctctcctccagaacctaaactccatga-tgcaca-gactttaatctttgtgctgagtggtttaatctgagcaccGTCTATAGGGTTTTCCCATCCCACACT-GAATACAA--------TTTTAA----TTTAAAAAACATTGTAGCTGTATAT---CTGAAGAGGAATCATTTGGGGTCTAGGTTGCCTTT--TGCTTAGTC----ACTTTCCACCAACAATATCCTAATAGAC---ACAGAAAAC----TTCTTATTTCATTATTAGAAACACTTTTGCATTCAATTTACCAGGCTTAATATAAAT------------------------------------------------------------------------TAAAAAGGAACAAAGAATACACTAGTGACTACTTAGG--------------------------------A-AGATGCTG-------------------CTATAAATCTTCTGGCCCCAGTTGTAACCTAGGGAATATAATTCGTTGG-----AAGCATATTATTATTCTAGAAGCAATTCTTTCC-GGTAAGATGCAAGACTTCTGTGACAAGAATTTCACCATGTC-CTTTCACGTTAATGCAGAGTAAAAAAGATTTTTGTTATGTTCTATGGAGCCTCAAGT----------GTTTCT---------TAAATGAAAAA--------G-TGCATGAAATAAA-TAGTAACACTGCTGTGAAAAAAAAGAATT i calJac3.chr3 C 0 C 0 s mm10.chr5 49312237 1667 + 151834684 TTCTTGCATATATTTTCCCTGTCCTCACTAATATGACATTCTACTGATTTCATGGCT-CTTTGGTGGCTATACCATTCACTCTCCTAGATTCATGTCTTATAGCACACATTCCAG----------GTTTCCTTTT--GT-CTAAACTCAACCTCTAGACAA-------------------GATAACTTTGCAAATGCATAAAATTTCTAGTGCTAATCTCC--------------Attgatatctctacacagaca----gatgtataaaaaatgtcttggacataacc-aaaaccaaatcca----tttcct----tctagcctgttccac-----------------atcttctctgcctctg--aagggataacaccc-ccttccaaatgctcagtttaaaataaaacaaa--caataccatgtcttctttactgtacacctaatcaatcaat-aatatttatagt-----------------------tcattattaat-----aaacacttcctat------------------------------------------------------gacagtctc------------------------agaatttat-gccattttcttgcagagaactcttagctatgattactgcttctgctcttatcaccatg-agtccattgttactgcaacaggca-----atattgttaaagggc-tctctaatcatgccacacttgtgctt--gtctc-ctagtgaccacccattcctttcagagaaagGGTATTTATCTCACTCACATTACTTGTCTGCCAGGGACCTG----------------------------------------------------------------------------TTGCATGTAGTTTATATAGACAGACTATGTCTGTAGAAACCCCAGTGTATTCTTTTCTTA--GATTATGCTCCTGGAGTTTCTCTGCC---AAAGTTCCCTATTTAAGAGCATCTCTA-GTCCCATTGTCTatct---------tcctcaggtcttaactgtag--tcagctttccagtgatgctttcggagaacagactctttaaaaatgagatctttgttctataacttttctatccttttctctgttttatttACACTCTACTGCTTATTGTaatataaca-cacacacatgcacacagatacaca--------cacacacacacaca-------------catatgcacaATGACAAAGAGATTCTTAGTTTATTTATCTT---TCACTCGCTTGTA-AATTTGATACCCATGA-CATATGTAGCATTTATCTTTGTGTTGAAAGTCATATGCTGAATTCC-------------TCCTCACCCTTATGAGAAAACAAATACGTACTATTAC----CATAAAAA--AAGAAGTGTGTACCTTTATTAGATAGGATTCATTTAGGAT-TTTTTTATTTTTGATACATCGCT----TATTCTCAACAGAAAAATCCTAATAGGCTAAATAAAA-TG----TTATTA----GTTAGTAGAAACACTTTTGTTCTTCTCTTATTTGCTCatatatatatatatgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtatacatatatataatcatatatatGATAACATTTTCTGCAACTGAATCAATTATATTTTATATAGTATTTGAAGCCACTCTTCTTCCAATATATATGGAATGTAGATAGATACAGAGAGAGGGGGGTAGATTAATTATGGATCACTTGAAC--AATACTAAACAAGAGA--ATAACTTGCGGGAGTCAAGGCATATTAATATTCCCCAAG--ATAGTCTCATGGTCACATGTAAGAATCTTGCAGCAGGAATTCTTTTGGGCC-ACTTAACATTAAAACAAAGT-TTTAAGAAGTATTTGATTTTAAATAAAGTATTGGGTTATTAGGTAAGTTATA---------TTAGTGAATGA---------ATGACTAAAATAAG-CCTTAATTCAGTTGTAGATTAAGAGAATT i mm10.chr5 I 8 I 62 s canFam3.chr3 3901453 1687 - 91889043 TCCTCACACCActttgctg-ggagtctgtgatcctatactcgactggtgttgctcctactcagtagccattccttctcagtttcccagattcttgtctt-----tcaagtctcagtct-agac--ctcctctcctctgtcccacactcactttccacataatcttttcccagttgatgtcaatga-ctttcaaat---ataaacctccaacctgagtctcttccctgaacttcagactcatacgttaacatagctacctggatg--taactgacatcttaaaagcaactaaaaacaaactccaaatctccctttgcctccaagcttttccacac------------agaggctttcctgtctctgtaaaatggcaaaatcatatttctaggtgctcaggt-----taagacaaaaccaaaccttgccccaa-ccaccccacatccaatccttcag-ggatcatgttggc-----------------------tcagtgttcaaaatcaaaaagcttcctactgaccccccaggcacacgtgcgtgcgcgtgcgtgcacacacacacacacacacacacacacacatcatatctttggttcaagatggcatgacttattacttcttaactg-----gcatctc------tgtatctg----tgcccctgatgtc-tacagtgtattcttagcccaactgctggagtgatcattttataaca-agtccaaatcacatgacacctttgctcgagtttctccaatgacttcccatcccattcagagtaaaatt-ctgaaactacccatatc-tctgtctccctgacttctc----------------------------------------------tctggcctcatct-acctactgagccctg-ttccctctggttcatatagacctgatgttcctttataagaacca--acatgtgtgcctcaaagatattgccctttccactctgtctgcctggaat--ctctatttaaggacatgtataggtctcattgccttacccctccccgccccccggatctgtgttcaagagttaacttttcaatgatgctttcctggaccatcctattaaaatttaat-tcctgacactgcatatcccttatgccttctgctgctttattt-tactctatggcttattgcaatataacaccaaacacacagacactc---------------------------------tctctcttgtatttatttgtttgc--------------------tgtttg---tctctctcctctagaacctatgatccatgagtgtaca-cactttgacctttatgctgagagctacatgctgggcacttcgtacag----tgccagggcc---tc-aaaaatac--------ttttaaaataaataaaGA--ATTGAAGAGTTACGT---CTGGATAGGAACCATTTGCAGTCCAGGCTGCTGTT--TGCCTAGTCACATACTTTCAACTAATGGCATCCTAATAGAC---ACACAA-TCTTTTTTTTTATTTCATTATTAGAGACATTTTCACATTTAATTTGCCAGGCTTAACCTAAAT------------------------------------------------------------------------TAAAAAGTAACAAGGAATATGCCAGAGATTACTTGGA--------------------------------AGAGATGCGG-------------------CTGTAAATCTTTTGATCCCAGTGCTAATCTAGAGAAGATAATTTGTTAG-----AAGCA---TATTAGTCCACAAGCAATTCTTATA-GGCAAAAAGTAAGACTTTTTTGACAAGAATTTCACCATGCCTCTTTCATATTAATGAAGAGT---AAAGACTTTTGTTATATTCTACAAAGCCACAAGA----------GCAGCTTTACATAAGTAAATGGATGATTCTAATTAATGAATTAAATAAA-TATTAAGAGTGCTGTGAATGAAGATAATT i canFam3.chr3 C 0 C 0 a score=121742.000000 s hg38.chr4_KI270790v1_alt 215455 34 + 220246 AATACAAGAATTCTAAAAGCAAAGGTATGCCTCT s panTro4.chr4 21604439 34 + 193495092 AATACAAGAATTCTAAAAGCAAAGGTATGGCTCT i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21780877 34 + 198332218 AATACAAGAATTCTAAAAGCAAAGGTATGGCTCT i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20389146 34 - 85365473 AATACAAGAATTCTAAAAGCAAAGGTATGGCTCT i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16855222 34 + 184069350 AATATAAGAATTCTAAAAGCAAAGGTATGACTCT i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20904975 34 + 189454096 AATATAAGAATTCTAAAAGCAAAGGTATGACTCT i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16495494 34 + 178775436 AATATAAGAATTCTAAAAGCAAAGGTATGACTCT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19978227 34 - 48547382 AATATAAGAATTCTAAAAGCAAAGGTATGACTCT i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21339028 34 - 190850796 AATACAAGAATTCTAAAAGCAAAGGCATGACTCT i calJac3.chr3 C 0 C 0 s canFam3.chr3 3903140 34 - 91889043 AATGAAACGGTTTTTAAAGCAAAGGTATAGCTAT i canFam3.chr3 C 0 C 0 e mm10.chr5 49313904 62 + 151834684 I a score=1902508.000000 s hg38.chr4_KI270790v1_alt 215489 581 + 220246 GCTTCATTCCCATGAATGTTT---CCTATAAGTTTACAT-GTGAAACAGAA--CTCTGCAAATTTTAATTTTAATCAAGAAAC----TAAGTTGACAGT--TTTTATTTAAAAATGAAATATATATTTCACACACTA--AGTTTTCTAATTTCATTTGAATCTTTTACAAA-----------ACATAAAAGTAT-TT-TATAATATATGGCACATTACAAAACT-TGTCTTGTTTGGAAAGTATTTAATGCATAAAGTTTAATAAATCATAAATCAGATATGATGTGTGACTCATTAATAACAATTGGTTTGGAAAA------CTCTCCCTGAAGCACAAATTGTTGGCTTGCTTCC-CAATATCACTGTTCAATCAACAGTGATTGaagaatcactgttcttcaatgcc--tgaagctcaatg-tctaaa-------aacagttattttatggt---tttgc-----------------------------------------------------------ttgttcatc-atttgtttcaggtggg-------------------------------------------------aggtaaatctggttcc-------------tTG-------------------------------CTGGAAGAAGATGTCAAAAATATTCAGTATTGCAACACGGATATATTATTATTTAGAAATGAATAAAATAA--------------AATAAGTGCCTGGCTCAGTATCACCCAGTGATTAAATTGGGAAAGGGAGAG s panTro4.chr4 21604473 563 + 193495092 GCTTCATTCCCATGAATGTTT---CCTATAAGTTTACAT-GTGAAACAGAA--CTTTGCGAATTTTAATTTTAATCAAGAAACTATTTAAGTTGACAGt--ttttatttaaaaatgaaatatatatttCACACACTA--AGTTTTCTAATTTCATTTGAATCTTTTACAAA-----------ACATAAACGTAT-TT-TATAATATATGGCACATTACAAAACT-TGTCTTGTTTGGAAAGTATTTAATGCATAAAGTTTAATAAATCATAAATCAGATATGATGTGTGACTCATTAATAACAATTGGTTTGGAAAA------CTCTCCCTGAAGCAGAAATTGTTGGCttgcttcc-caatatc----------------------aagaatcactgttcttcaatgcc--tgatgctcaatg-tctaaa-------aacagttattttatggt---tttgc-----------------------------------------------------------ttgttcatc-atttgtttcaggtggg-------------------------------------------------aggtaaatctggttcc-------------tTG-------------------------------CTGGAAGAAGATGTCAAAAATATTCAGTATTGCAACACGGatatattattatttagaaatgaataaaataa--------------aataaGTGCCTGGCTCAGTATCACCCAGTGATTAAATTGGGAAAGGGAGAG i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21780911 563 + 198332218 GCTTCATTCCCATGAATGTTT---CCTATAAGTTTACAT-GTGAAACAGAA--CTTTGCAAACTTTAATTTTAATCAAGAAACTATTTAAGTTGACAGTCGTTTTATTTAAAAATGAAATATATATTTCACACACTA--AGTTTTCTCATTTCATTTGAATCTTTTACAAA-----------ACATAAACATAT-TT-TATAATATATGGCACATTACAAAACT-TGTCTTGTTTGGAAAGTATTTAATGCATAAAGTTTAATAAATCATAAATCAGACACGATGTGTGACTCATTAATAACAATTGGTTTGGAAAA------CTCTCCCTGAAGCAGAAATTGTTGGCttgcttcc-caatatc----------------------aagaatcactgttcttcaatgcc--tgatgctcaatg-tctaaa-------aacagttattttatgat---tttgc-----------------------------------------------------------ttgttcatc-atttgtttcaggtggg-------------------------------------------------aggtaaatctggttcc-------------tTG-------------------------------CTGGAAGAAGATGTCAAAAACATTCAGTATTGCAACACGGatatattattatttagaaatgaataaaataa--------------aataaGTGCCTGGCTCAGTATCACCCAGTGATTAAATTGGGAAAGG--GAG i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20389180 570 - 85365473 GCTTCATTCCTGTGAATGTTT---CCTATAAGTTTACAT-GTGAAACAGAA--CTTTGCACACTTTAATTTTAATCAAGAAACTATTTAAGTTGACAGTTGTTTTATTTAAAAATGAAATATATATTTCACACACTA--AGTTTTCTAATTTCATTTGAATCTTTTACAAA-----------ACATAAACATAT-CT-TATAATATATGGCACATTATAAAACT-TGTCTTGTTTGGAAAGTATTTAATGCACAAAGTTCAATAAATCATAAATCAGATATGATGTGTGACTCACTAATAACAATTGGTTTGGAAAACTCTCCCTCTCCCTGAAGCAGAAATTGTTGGCttgcttcc-caatatc----------------------gagaaccactgttcttcaatgcc--tgatgctcaatg-tctaaa-------aacagttattttatggt---tttgc-----------------------------------------------------------ttgttcatcaatttgtttcaggtggg-------------------------------------------------aggtaaatctggttcc-------------tTG-------------------------------CTGGAAGAAGACATCAAAAATATTCAGTATTGCAACACGGATATATTATTATTTAGAAATGAATGAAATAA--------------AATAAGTGCCTGGCTCAGTATCACCCAGTGATTAAATTGGGAAAGG--GAG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16855256 562 + 184069350 GCTTCATTCCCATGAATGTTT---CCTACAAGTTTACAT-GTGAAACAGAA--CTTTGCAAACTTTAATTTTAATCAAGAAACTATTTAAATTGACAGTTGTTTTATTTAAAAATGAAATATATATTTCACACACTA--AGTTTTCTAATTTCATTTGAATCTTTTACAAA-----------ACATAAACACAT-TT-TATAATGTATGGCACATTATAAAACT-TGTCTTGTCTGAAAAGTATTTAATGCACAAAGTTTAATAAATCATAAATCAGATATGACACGTGACTCATTAATAACAATTGGTTTAGAAAA------CTCTCCCTGAAGCAGAAATTGTTGCCttgcttcc-cagtctc----------------------aggaa-cactgttctttaatgcc--tgatgttcaatg-tctgaa-------aactgttattttatggt---tttgc-----------------------------------------------------------ttattcatc-atttgtttcaggtggg-------------------------------------------------aggtaaatctggttcc-------------ttt-------------------------------tTAGAAGAAGATGTCAAAAATATTCAGTATTGCAACACGAATGTATTATTATTTAGAAATGAATAAAACAA--------------AATGAGTGCCTGGCTCAATATCACCCAGTGATTAAACTGGGAAAGA--GAG i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20905009 562 + 189454096 GCTTCATTCCCATGAATGTTT---CCTACAAGTTTACAT-GTGAAACAGAA--CTTTGCAAACTTTAATTTTAATCAAGAAACTATTTAAATTGACAGTTGTTTTATTTAAAAATGAAATATATATTTCGCACACTA--AGTTTTCTAATTTCATTTGAATCTTTTACAAA-----------ACATAAACACAT-TT-TATAATGTATGGCACATTATAAAACT-TGTCTTGTCTGAAAAGTATTTAATGCACAAAGTTTAATAAATCATAAATCAGATATGACACGTGACTCATTAATAACAAATGGTTTAGAAAA------CTCTCCCTGAAGCAGAAATTGTTGCCttgcttcc-cagtctc----------------------aggaa-cactgttctttaatgcc--tgatgttcaatg-tctgaa-------aactgttattttatggt---tttgc-----------------------------------------------------------ttattcatc-atttgtttcaggtggg-------------------------------------------------aggtaaatctggttcc-------------ttg-------------------------------ttaGAAGAAGATGTCAAAAATATTCAGTATTGCAACACGGATGTATTATTATTTAGAAATGAATAAAATAA--------------AATGAGTGCCTGGCTCAATATCACCCAGTGATTAAACTGGGAAAGA--GAG i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16495528 558 + 178775436 GCTTCATTCCCATGAATGTTT---CCTACAAGTTTACAC-GTGAAACAGAA--CTTTGcaaactttaattttaatcaagaaactatttaaattgacagttgttttatttaaaaatgaaatatatatttcacacacta--agttttctaatttcatttgaatcttttacaaa-----------acataaacacat-tt-tataatgTATGGCACATTATAAAACT-TGTCTTGTTTGAAAAG----TAATGCACAAGGTTTAATAAATCATAAATCAGATATGACATGTGACTCATTAATAACAATTGGTTTAGAAAA------CTCTCCCTGAAGCAGAAATTGTTGCCTTGCTTCC-CAATCTC----------------------AGGAA-CACTGTTCTTCAATGCC--TAATGTTCAATG-TCTGAA-------AACTGTTATTTTATGGT---TTTGC-----------------------------------------------------------TTATTCATC-ATTTGTTTCAGGTGGG-------------------------------------------------AGGTAAATCTGGTTTC-------------TTG-------------------------------TTAGAAGAAGATGTCAAAAATATTCCGTATTGCAACATGGATgtattattatttagaaatgaataaaataa--------------aatgagtgccTGGCTCAATATCACCCAGTGATTAAACTGGGAAAGA--GAG i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19978261 562 - 48547382 GCTTCATTCCCATGAATGTTT---CCTACAAGTTTACAC-GTGAAACAGAA--CTTTGCAAACTTTAATTTTAATCAAGAAACTATTTAAATTGACAGTTGTTTTATTTAAAAATGAAATACATATTTCACACACTA--AGTTTTCTAATTTCACTTGAATCTTTTACAAA-----------ACATAAACACAT-TT-TATAATGTATGGCACATTATAAAACT-TATCTTGTTTGAAAAGTATTCAATGCACAAAGTTTAATAAATCATAAATCAGATATGACATGTGACTCATTAATAACAATTGGTTTAGAAAA------CTCTCCCTGAAGCAGAAATTGTTGCCttgcttcc-caatctc----------------------aggaa-cactgttcttcaatgcc--taacgttcaatg-tctgaa-------aactgttattttatggt---tttgc-----------------------------------------------------------ttattcatc-atttgtttcaggtggg-------------------------------------------------aggtaaatctggttcc-------------tTG-------------------------------CTAGAAGAAGATGTCAAAAATATTCAGTATTGCAACACGGATGTATTATTATTTAGAAATGAATAAAATAA--------------AATGAGTGCCTGGCTCAATATCACCCAGTGATTAAACTGGGAAAGA--GAG i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21339062 563 - 190850796 GCCTCATTCCAATGAATGTTT---CCTGTAAGTGTACAC-ATGAAACAGAAAGTTTTGCAAACTTTAATTTTGATCAGGAAATGATTTAAATCGACAGTTGTTTTATTTATAAATGAAATATATATTTCACACACTA--AGTTTTCTCACTTCATTTGAATCTTTTACAAA-----------ACATAAACACAT-TT-TATAATGTATAGTACATTATAAAACT-CATCTTGTTTCAAAAGTATGTAATGCATAAAGTTTAATAAATCATAAATCGGATATGATGTGTGACTCATTAATAACAATTGGTTTAGAAAA------CTCTCCCTGAAGCAGACATTGTTGGCttgcttct-cagtctc----------------------agtaattactgttcttcaatgcc--tgatgttcaatg-tctgaa-------aacagttcttttgtggt---tttgc-----------------------------------------------------------ttgttcatc-atttgtttcaagtggg-------------------------------------------------aggtaaatctggttcc-------------tTG-------------------------------CTAGAAGAAGATGTC-AAAATATTCAGTAATGCAAAACAGATATATAATCATTTAGAAATGAATGAAATAA--------------AACAAGTGTCTGGCTCAATATCACCCAGTGA-TACATTGGGACAGG--GAG i calJac3.chr3 C 0 C 0 s mm10.chr5 49313966 704 + 151834684 GGTTCATTCCAAGGAGTTTTTTGCCTGACAAGAATAATCAACAAAGCAGAA--AAATGCAACC--TGATTATAATTAAGAAACAATTTAAATGGAAAA---TTCTGTTTGT-GATTAAATGTATGTTTCATATGCTAATAGTTCTCTTATTTCATTATAATCATTATAAAA-----------ACAAAAGCACAT-TTATAAACTGTATAGCAAATTATAAAATTAAGTCTTGTTTGAAAAATACTTTATATCTATAG-TAAATAAGCCCCAAATGAGTTGCAAT-----ACTCATTAATACACTACGTTGTGGAAAA--------CTTCCTGAAACAAATATTTTTAGCTTAATTCCTCTCTCAC----------------------AATGAATGTTGCCTTTCACTGCCTGTGATGTCCATGC-TCTTGATTGCTGTAGTTGTTTGTTTATTTTTTGTTTGCCTTTGATAGttgagacaaggactctctacagagccctaggtataaagtagacctacaatttactcacc-atgtacaccaggctggGACTAATGTTGTGTGCCACAATGCTGGCTACCTTATGCCCATATGTTATAGTTATATTCTGTGCC-------------TTTAAATAATTTGTGAGGGGGCCATGAAGTATTCCTAGAGGGACTTGTCAAAAATATTCACTCACCTACCAAGGACATGATATTATTTAGGAACAAGCAAAAAAAAAAAAATTACATCTAATAAGTGCATGACTCAAGATCAGCCA---------------------GAG i mm10.chr5 I 62 C 0 s canFam3.chr3 3903174 577 - 91889043 GGCTCATTCCACTGAATATTG---CCTAGCAGTTCACAG-GGAAATCAGAAGGCTTAGCAAACTTTGATCTTAATTAAGAAATTATTTTAAATGGCAGGAGTTGTATTAATAAATGAAATCC----CTCACACACTAATACTTTCCTACTTTCATTTGAATCTGTTACAAAATGCTGTTAATACATAAACACGTATT-CACACTATGTGGTACATTATAAA----AGTATTGCTTGAAAAGTATTTAATGTACAAAACTTATAAAACCATAAACCAGACACAATGTAAAGTTCATTAACATCATCATTTCAAGAAAA--------CTGCCTGAAGCAG----CCTTAGCttgctccc-cacctca----------------------caggatcactgcccttcactgcc--tgattcccaatgttttgaa-------aacatttattgtatgtg---tttgc-----------------------------------------------------------ttgtgtttc-atttgtttcaggtagg-------------------------------------------------aggtaaatctaggccctattactctgttttta-------------------------------ttggaagtggatgtcAAAAACATTCAATTCCATAATATGAGCATAAGATTATTTAGAAAC-----AGATAC--------------AGTACGTGGCTTGATGAAGATCACCTAGCTACTAAATTGAGGAAGGAGGAG i canFam3.chr3 C 0 I 194 a score=1362451.000000 s hg38.chr4_KI270790v1_alt 216070 382 + 220246 ATCAACAGCCACATCCCAGATCTTAAACACAG----TAATACTCTGCTTCTTCTTAAACCCTCATTAACATTTGCAACTTAA---TATTATAATTTTTCAAATTAAAACCTCCTTTT-TCTAGACTCTGACCTCCTTG--GAGGAAATAGTTCCGTGTTGTGTTTCACTCTAAGTCCATGTATAGCC-CAGTGTTGGTGC-----ACACTCAgga-------catgctcaggaatgaatgacagcag-gtaagcgagctgcttactgggctgGTTCTGGCAAAGCACAAAATCATGCCAGTGACGGCCAGACAGGATATATATTGGGGG-TGAGGTCTTTGCAAGGAAGGCTACGAGG-CTTGGAGATATTAATATACCATAATGAAAAATAAGTTTCATGAGGGAAA-- s panTro4.chr4 21605036 382 + 193495092 ATCAACAGCCACATCCCAGATCTTAAACACAG----TAACACTCTGCTTCTTCTTAAACCCTCATTAACATTTGCAACTTAA---TATTATAATTTTTCAAATTAAAACCTCCTTTT-TCTAGACTCTGACCTCCTTG--GAGGAAATAGTTCCGTGTTGTGTTTCACTCTAAGTCCATGTATAGCC-CAGTGTTGGTGC-----ACACTCAGGA-------CATGCTCAGGAATGAATGACAGCAG-GTAAGCGAGCTGCTTACTGGGCTGGTTCTGGTAAAGCACAAAATCACGCCAGTGACGGCCAGACAGGATATATATTGGGGG-TGAGGTCTTTTCAAGGAAGGCTATGAGG-CTTGGAGATATTAATATACCATAATGAAAAATAAGTTTCATGAGGGAAA-- i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21781474 381 + 198332218 ATCAACAGCCACAT-CCAGATCTTAAACACAG----TAATACTCTGCTTCTTCTTAAACCCTCATTAACATCTGCAACTTAG---CATTATAATTTTTCAAATTAAAATCTCCTTTT-TCTAGACTCCGACCTCCTTG--GAGGAAATAGTTCCGTGTTGTGTTTCACTCTAAGTCCATGTATAGCC-CAGTGTTGGTGC-----ATACTCAGGA-------CATGCTCAGGAATGAATGACAGCAG-GTAAGCAAGCTGCTTACTGGGCTGGTTCTGGTAAAGCACAAAATCACGCCAGTGACAGCCAGACAGGATATATATTGGGGG-TGAGGTCTTTGCAAGGAAGGCTATGAGG-CTTGGAGATATTAATATACCATAATGAAAAATAAGTTTCATGAGGGAAA-- i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20389750 382 - 85365473 ATCAACAGCCACATCCCAGATCTTAAACACAG----TAATACTCTGCTTTTTCTTAAACCCTCATTAACATTTGCAATTTAG---TACTATAATTTTTCAGATTAAAACCTCCTTTT-TCTAGACTCTGACCTCCTTG--GAGGAAATAGTTCCATGTTGTGTTTCACTCTAAGTCCATGTATAGCC-CAGTGTTGGTGC-----ACACTCAAGA-------CATGCTCAGGAATTAATGACAGCAG-GTAAGCGAGCTGCTTACTGGGCTGGTTCTGGTAAAGCACAAAATCACGCCAGTGACAGCCAGACAGGGTATATATTGGGGG-TGAGGTCTTTGCAAGGAAGGCTATGAGG-CTTGGAGATATTAATATACCATAATGAAAAATAAGTTTCATGAGGGAAA-- i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16855818 382 + 184069350 ATCAACAGCCACATCCCAGATCTTAAACACAG----TAATACTCTGCTTCTTCTTAAACCCTCATTAACATTTGCAACTTAG---TATTATAATTTTTCAAACTAAAATCTCCTTTT-Tctagactctgaactccttg--gaggaaatagttccgtgttgtttttcactctaagtccatgtatagcc-cagtgttggtgc-----acattcagga-------catgctcaggaatgaatgaCGGCAG-GTAAGCGAGCTGCTTACTGGACTGGTTCTGGTAAAGCACAAAATCATGCCAGTGACAGTCAGAAAGGATATACATTGGGGC-TGATGTCTTTGCAAGGAAGGCTATGAGG-CTTGGAGATATTAATATACCATAATGAAAAATAAGTTTCATGAGGGAAA-- i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20905571 382 + 189454096 ATCAACAGCCACATCCCAGATCTTAAACACAG----TAATACTCTGCTTCTTCTTAAACCCTCATTAACATTTGCAACTTAG---TATTATAATTTTTCAAACTAAAATCTCCTTTT-TCTAGACTCTGACCTCCTTG--GAGGAAATAGTTCCGTGTTGTTTTTCACTCTAAGTCCATGTATAGCC-CAGTGTTGGTGC-----ACATTCAGGA-------CATGCTCAGGAATGAATGACGGCAG-GTAAGCGAGCTGCTTACTGGACTGGTTCTGGTAAAGCACAAAATCATGCCAGTGACAGTCAGAAAGGATATACATTGGGGC-TGATGTCTTTGCAAGGAAGGCTATGAGG-CTTGGAGATATTAATATACCATAATGAAAAATAAGTTTCATGAGGGAAA-- i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16496086 382 + 178775436 ATCAACAGCCACATCCCAGATCTTAAACACAG----TAATACTCTGCTTCTTCTTAAACCCTCATTAACATTTGCAACTTag---tattataatttttcaaactaAAATCTCCTTTT-TCTAGACTCTGATCTCCTTG--GAGGAAATAGTTCCGTGTTGTTTTTCACTCTAAGTCCATGTATAGCC-CAGTGTTGGTGC-----ACGTTCAGGA-------CATGCTCAGGAATGAATGACGGCAG-GTATGCGAGCTGCTTACTGGACTGGTTCTGGTAAAGCACAAAATCACGCCAGTGACAGTCAGAAAGGATATACATTGGGGC-TGATGTCTTTGCAAGGAAGGCTATGAGG-CTTGGAGATATTAATATACcataatgaaaaataagtttcatgagggaaa-- i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19978823 382 - 48547382 ATCAACAGCCACATCCCAGATCTTA---ACAG----TAATACTCTGCTTCTTCTTAAACCCTCATTAACATTTGCAACTTAGTATTATTATAATTTTTCAAACTAAAATCTCCTTTT-TCTAGACTCTGACCTCCTTG--GAGGAAATAGTTCCGTGTTGTTTTTCATTCTAAGTCCATGTATAGCC-CAGTGTTGGTGC-----ACATTCAGGA-------CATGCTCAGGAATGAATGACGGCAG-GTAAGCGAGCTGCTTACTGGACTGGTTCTGGTAAAGCACAAAATCACGCCAGTGACAATCAGAAAGGATATACATTGGGGC-TGATGTCTTTGCAAGGAAGGCTATGAGG-CTTGGAGATATTAATATACCGTAATGAAAAATAAGTTTCATGAGGGAAA-- i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21339625 378 - 190850796 ATCAACAGCCATATCCCAGATCTTAAACATAG----TAATATTCTGCTTCTTCTTAAACCTTCCTTAGCATTTGCAACTTAG---TAATATAATTTTTCAAATTAAAATCTCTTTTTATCTAGACTCTGACCTCCTTG--GAGGAAATAATTCTGTGTTGTGTTTCACTCTAAGTCCATGTA---AT-AAGTGCTGGTGC-----ACACTCAGGA-------CATGCTCAGGAATGAATGATGGCAG-GTAAGGGAACAGCTTACTGGGCTGGTTCTGGTAAAGCACCAAGTTATGCCAATGACAGCCGGACAGGATATATATTGGGG--TGAGGTCTTTACAAGGAAGGCTATGAAG-CTTGGAGATATTAAGATACCACAATGAAACA-AAGTTTCATGAGGGAAA-- i calJac3.chr3 C 0 C 0 s mm10.chr5 49314670 376 + 151834684 ATTGAAAACCAAGT-CCAGATATTAAATGC------TGGTATCCTGTTTCTTATTAAGTAGTCATTAATATTTGCCACTTGG---TATTGCAATTTGCAAAATGAAAATGTTGTCCT-TTTATACTGTGAGTTCCTTGCAGGGGAAACAG-TCTAGATTGTATTTTCCTTCAAGTCTGTGTGTAATCACTGGGTGGCCAC-----ACAGTTGGCATTGAATGCGTGCTTAGAAGTGAATGA--GCAGAGTAAGTG-----------GGGTCTATCCAGGTAGAACACTAAGTCACA-CAGGCATAGAAAGATGGGATATTCATCAGATG-TGGGTTCTTTGTATGGAAGATTATGAGGTCTTCTGTTTATTAAAATTCTACAATGGATTACAAACTTGTTGAGGGAAA-- i mm10.chr5 C 0 I 236 s canFam3.chr3 3903945 383 - 91889043 aTAAATAAATAAACCCTAGGTCCCAAACCCTGAACCCAAACCTCTCCCGCTTCTTAACTCTTCATCAACATTTGCCACTTCG---TATTACAACTTGTCAACTTAAAATC---TTTT-TCCA-ACTATGGTCTCCTTG--AAGGAAATAATTTCATGTTAGGCTTAACTTTATGGCCACGCAG-----CAGTGGTGGCCCGGTTGACATTCCATG-------CATACTTAGGAATGAATGAATATAT-ATGAATAAGTAGCTTATGGAACTGGTTAGAGTAAAACACTGAGCCACACAGGTGACAGCAAGACAGGAAATTTTTCAGTGCTTCGGGTCTTTTCAAGGAAGGTTATGAGG-CTTAGAAATAGTAACATACCTCAAGAAAA---AAATTTCACAAGAACTAGT i canFam3.chr3 I 194 C 0 a score=727891.000000 s hg38.chr4_KI270790v1_alt 216452 241 + 220246 AAA-A----TTAATAAAACATTGTAA--------TGGGTAAAGGGGATGTAGGAGTCACGGATGTGCCAGCCAACTTTATTTAGATATCTGCTAAGTGGAAATGTTATTTTGATTCAGATTTACTCTGAAATGGGCATCTGTTCaggatcacaaacttatacgctggaagaaattactacataggtcacttgatcctggttattgtgcaaattaagagtcga-ttctaggctgggcgcagtggctcacgcctgta s panTro4.chr4 21605418 241 + 193495092 AAA-A----TTAATAAAACATTGTAA--------TGGGTAAAGGGGATGTAGGAGTCACGGATGTGCCAGCCAACTTTATTTAGATATCTGCTAAGTGGAAATGTTATTTTGATTTAGATTTACTCTGAAATGGGCATCTGTTtaggatcacaaacttatacgctggaagaaattactacagaggtcacttgatcctggttattgtgcaacttaagaatcga-ttctaggccaggcgcagtggctcacgcctgta i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21781855 241 + 198332218 AAA-A----TTAATAAAACATCATAA--------TGGGTAAAGGGGATGTAGGAGTCACGGGTGTGCCAGCCAACTTTATTTAGATATCTGCTAAGCGGAAATGTTATTTTGATTCAGATTTACTCTGAAATGGGCATCTGTTCaggatcacaaacttatacgctggaagacattactacataggtcacttgattttggttattgtgcaacttaagaatcca-ttctaggccgggcgcagtggctcacgcctgta i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20390132 242 - 85365473 AAATA----ATAATAAAACATCGTAC--------TGGGTAAAGGGGATGTAGGAGTCACAGATGTGCCAGCCAACTTTATTTAGATATCTGCTAAGCGGAAATGTTATTTGGATTCAGATTTACCCTGAAATGGGCATCTGTTCaggatcacaaacttatacgccagaagacattactacataggtcacttgattctggttattgtgcaacttaagaatcca-ttctgggccaggcgcagtggttcatgcctgta i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16856200 241 + 184069350 AAA-A-----TAATAAAACATTGTAA--------TGGGTAAAGGGGATGTAGGAGTCACGGATGTGTCAGCCAACTTTGTTTAGATATCTGCTAAGCGGAAATGTTATTTTGATTCAGATTTACTCTGAAATGGACATCTGTTCGGGATCACAAACTTATACACTGGAAGATATTACTACATAGGTCACTTGATTCTGGTTATTGTGCAACTTAAGAATCCATTTCTGggctgggagcagtggctcacgcctgta i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20905953 240 + 189454096 AAA-A-----TAATAAAACATTGTAA--------TGGGTAAAGGGGATGTAGGAGTCACGGATGTGTCAGCCAACTTTGTTTAGATATCTGCTAAGCGGAAATGTTATTTTGATTCAGATTTACTCTGAAATGGACATCTGTTCGGGATCACAAACTTATACACTGGAAGATATTACTACATAGGTCACTTGATTCTGGTTATTGTGCAACTTAAGAATCCA-TTCTGggccgggagcagtggctcacgcctgta i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16496468 240 + 178775436 aaa-a-----taataaaacattgtaa--------TGGGTAAAGGGGATGTAGGAGTCACGGATGTGTCAGCCAACTTTGTTTAGATATCTGCTAAGCGGAAATGTTATTTTGATTCAGATTTACTCTGAAATGGACATCTGTTCGGGATCACAAACTTATACACTGGAAGATATTACTACATAGGTCACTTGATTCTGGTTATTGTGCAACTTAAGAATCCA-ttctgggccaggagcagtgactcacgcctgta i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19979205 237 - 48547382 AAA-A-----TAATAAAA---TGTAA--------CGGGTAAAGGGGAGGTAGGAGTCACGGATGTGTCAGCCAACTTTGTTTAGATATCTGCTAAGCGGAAATGTTATTTTGATTCAGATTTACTCTGAAATGGACATCTGTTCGGGATCACAAACTTATACACTGGAAGATATTACTACATAGGTCACTTGATTCTGTTTATTGTGCAACTTAAGAATCCA-TTCTGggccgggagcagtggctcacgcctgta i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21340003 244 - 190850796 AAA-AA-ACTAAATAAAACATTGTAA--------TGCGTAAAGGGGGTATAGGAGTCACAGATGTGCCAGCTAACTTTATTTAGATATCTGCTCAGCTGAAATGTTACTTTGATTCAGATTTGCTCTTAAACGGGCATCTGTTCaggatcacaaacttatatgctggaagacactactagataggtcacttgaatctagttattgtacaactaaagaatcca-ttctggaactcatgcagtggctcgtgcctgta i calJac3.chr3 C 0 C 0 s canFam3.chr3 3904328 197 - 91889043 -----ATATTAAATAAAACATGGGGATGACCCTCTGGGCAAAGATGATGTAAGAGAGTCAGAACTGCCAA-GAACTTTGCCTAGTTACCTACTGAGCTGAAATTTTATTTTGACTCTGATTTGCTCTGAAATAAGCATCTGTTCaaaatcacgaattcataagtggaaag----tatgacataggccatatgggtcttgcgcctatg------------------------------------------------ i canFam3.chr3 C 0 C 0 e mm10.chr5 49315046 236 + 151834684 I a score=616416.000000 s hg38.chr4_KI270790v1_alt 216693 225 + 220246 attccagcacttcgggaggccaaggcgggcaaatagctggagtcgaggattttgagacaagcctggacaacctggcaaaacaccatctctat-aaaaaatacaaaaaattagccagacgtggtggtacactcctgtagtcccagtttcttgggaggctaaggttggagtatcacctgagcctaggaagtcaagactgcagtaagccttaattgtgc----cactgcactc s panTro4.chr4 21605659 225 + 193495092 attccagcacttcgggaggccaaggcgggcaaatagctggagtcgaggattttgagacaagcctggacaacctggcaaaaccccatctctat-aaaaaatacaaaaaattaaccagacgtggtggtacactcctgtagtcccagtttcttgggaggctaaggttggagtatcacctgagcccaggaagtcaagactgcagtaagccttaattgtgc----cactgcactc i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21782096 225 + 198332218 attccagcacttggggaggccaaggcgggcaaatagctggagttgaggattttgagacaagcctaggcaacctggcaaaaccccatctctac-aaaaaatacaaaaaattagccagacgtgatggtacactcctgtagtcccagtttcttgggaggctaaggttggagtatcacctgagcccaggaagtcaagactgcagtaagccttaaatgtgc----cacggcgctc i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20390374 225 - 85365473 attccagcactttgggaggccaaggcgtgcaaatagcttgagtccaggattttgagacaagtctgagcaacctggcaaaaccccatctctac-aaaaaatacaaaaaattcaccaggcaaggtggtacactcctgtagtcccagcttcttggcaggctaaggttggagtatcacctgagcccaggaagtcaagactgcggtaagccttaattgtgc----cactgcactc i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16856441 230 + 184069350 attccagcactttgagaggccgaggcaggcaaataccttgagtccaggatattgagacaagtctgggcaacctggcaaaaccccatctctataaaaaaatactaaaaattagccaggcatggtggtacactcccatagtcctagcttcttgggaggctaaggttggagtatcacctgagcccaggaagtcaagactgcagtaagcctcaattgtgccactcactgcactc i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20906193 230 + 189454096 attccagcactttgagaggccaaggcaggcaaataccttgagtccaggatattgagacaagtctgggcaacctggcaaaaccccatctctataaaaaaatactaaaaattagccaggcatggtggtacactcccatagtcctagcttcttgggaggctaaggttggagtatcacctgagcccaggaagtcaagactgcagtaagccttaattgtgccactcactgcactc i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16496708 223 + 178775436 attccagcactttgggaggccaaggcaggcaaatacCTTGAGTCCAGGATattgagacaagtctgggcaacttggcaaaaccccatctctat-aaaaaatactaaaaattagccaggcatggtggtacactcccatagtcctagcttcttgggaggctaaggttggagtatcacctgagcccaggaagtcaagactgcagtaagccttAATTGTGCCACTCACT------ i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19979442 202 - 48547382 attccagcactttgggaggccaaggcaggcaaataccttgagtccaggatattgagacaagtctgggcaacctggcaaaaccccatctctat-aaaaaatactaaaaattagccaggcatggtggtacactcccatagtcctagcttcttgggaggctaaggttggaggatcacctgagcccaggaagtcaagactgcagtaa--------------------------- i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21340247 225 - 190850796 atcccagcactttgggagaccaaggtggatgaatagcttgagcccaggattttgagatgagcctggggaacctggcaaaactctgtctctac-aaaaaatacaaaaaattagtcatggatagtgatgcactcctccagtcccagcttcttgggaggctaaagttggagaatcacctgagcccaggaagtcaagactgcagtgagacttaatcatgc----cagtacactc i calJac3.chr3 C 0 C 0 e mm10.chr5 49315046 236 + 151834684 I e canFam3.chr3 3904525 0 - 91889043 C a score=189026.000000 s hg38.chr4_KI270790v1_alt 216918 72 + 220246 cagcctgggcaactgaagtaagaacctgtctc-----------------------------aaa-------aaaaaaaaaaaaatccattgtgacaatagacattagc s panTro4.chr4 21605884 73 + 193495092 cagcctgggcaactgaagtaagaacctgtctc----------------------------aaaa-------aaaaaaaaaaaaatccattgtgacaatagacattagc i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21782321 71 + 198332218 cagcctgggcaactgaagtaagaacctgtctc------------------------------aa-------aaaaaaaaaaaaatccattgtgacaatagacattagc i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20390599 79 - 85365473 cagcctgggcaactgaagtaagaacctgtttcaaaaaa----------------------aaaa-------aaaaaaaaaaaaatccactgtgacaatagacattagc i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16856671 101 + 184069350 cagcctgggcacctgaagtaagaacctgtctcaaaaaaaaaaaaaaaagaaagaaaagaaaaGA-------AAAAAAAAAGAAATCCACTGtgacaatagacattagc i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20906423 108 + 189454096 cagcctgggcacctgaagtaagaacctgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaaaagaaaaaaaaagaaaTCCACTGTGACAATAGACATTAGC i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16496931 98 + 178775436 --GCCTGGGCACCTGaagtaagaacctgtctcaaaaaaaaaaaaaaacaaaaaagaaaagaaa--------aaaaaaaaagaaatccaccgTGACAATAGACATTAGC i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19979644 99 - 48547382 --gcctgggcaactgaagtaagaacctgtctcaaaaaaaaaaaaagaaagaaagaaaaaaGAAA-------AAAAAAAAAGAAATCCATTGtgacaatagacattagc i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21340472 70 - 190850796 caacctgggcaagtgaagtaaaaacctgtctc-------------------------------a-------aaaaaaaaaaaaatccattgtgacagtagacattagt i calJac3.chr3 C 0 C 0 s canFam3.chr3 3904525 35 - 91889043 ccgcctggg-------------------------------------------------------------------------aatctatcctgatgatggacatcaaa i canFam3.chr3 C 0 C 0 e mm10.chr5 49315046 236 + 151834684 I a score=1643943.000000 s hg38.chr4_KI270790v1_alt 216990 503 + 220246 cttatgattaagtcctccaaat--aacagaggtccattatgggtgagagaggctgtcccactgttagacaattttaactggtagaaatcttctttctcatatt--ATCTAGCTTCTTTACACATCAAGA------GAAGGTACA--------------------TACACACAAAGAGAGAGAGTGAGAGAGCTATACACAAACGATATAGCAGATTTCTCTCACAATGTTTAGACATACAGAAATACGCTTTCGACGTGATAgaggacggaaggagaggtggaggaggagggggTGAAAAGATCTAAAAGTAAAATATTTATATGAAGAGTAGTTTGCTTCTAATCACGCTGTATTTTAGTTGGACTAGAAAGTTCTAGGAATATATGGC-AAACAATATGCCAGAAATCTCATGCTCATTTACATCCCCAAGTTATTATTAAATTAAGA-TATTTTTT-ATCACCACCCCA----GCACTTCACCCCTGACATCCTAAAGGCTTAAAATCTGAAAATTTTACTGAT-CTTCAAAACCCAA s panTro4.chr4 21605957 503 + 193495092 cttatgattaagtcctccaaat--aacagaggtccattatgggtgagagaggctgtcccactgttagacaattttaactggtagaaatcttctttctcgtatt--ATCTAGCTTCTTTACACATCAAGA------GAAGGTACA--------------------TACACACAAACAGAGAGAGTGAGAGAGCTATACACAAACGATATAGCAGATTTCTGTCACAATGTTTAGACATACAGAAATACGCTTTCAACGTGATAGACGACGGAAGGAGAGGTGGCGGAGGAGGGGGAGAAAAGATCTAAAAGTAAAATATTTATATGAAGAGTAGTTTGCTTCTAATCACGCTGTATTTTAGTTGGACTAGAAAGTTCTAAGAATATATGGC-AAACAATATGCCAGAAATCTCATGCTCATTTACATCCCCAAGTTATTATTAAATTAAGA-TATTTTTT-ATCACCACCCCA----GCACTTCACCCCGGACATCCTAAAGGCTTAAAATCTGAAAATTTTACTGAT-CTTCAAAACCCAA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21782392 502 + 198332218 cttatgattaagtcctccaaat--aacagaggtccattatgggtgagagaggctgtcccaccgttagacaattttaactggtagaaatcttctttctcgtatt--ATCTCGCTTCTTTACACATCAAGA------GAAGGTACA--------------------TACACACAAAGAGAGTGAGCGAAAGAGCTATACACAAAAGATATAGCAGATTTCTGTCACAATGTTTAGACATACAGAAATACGCTTTCAACATGATAGAGGATGGAAGGAGAGGTGGAGGAGGAGGGGGTGAAAAGATCTAAAAGTAAAATATTTATAAGAAGAGTAGTTTGCTTCTAATCACGCTGTATTTTAGTTGGACTAGAAAGTTCTAAGAATATATGGC-AAACAATATGCCAGAAATCTCATGCTCATTTACATCCCCAAGTTATTATTAAATTAAGA-TA-TTTTT-ATCACCACCCGA----GCACTTCACCCCTGACATCCTAAAGGCTTAAAATCTGAAAATTTTACTGAT-CTTCAAAACCCAA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20390678 500 - 85365473 cttatgattaaatcctccaaat--aacagaggtccattatgggtgagagaggctgtcccactgttagacaattttaactggtagaaa---tctttctcgtatt--ATCTAGCTTTTTTACACGTCAAGA------GAAGGTACA--------------------TACACACAAAGAGAGACAGCGACAGAGCTATACACAAAAGATATAGCAGATCTCTGTCACAGTGTTTAGACATACAGGAATACGCTTTCAACGTGATAGAGGATGGAAGGAGAGGTGAAGGAGGAGAGTGTGAAAAGATCTAAAAGTAAAATATTTATATGAAGAGTAGTTTGCTTCTAATCACGCTGTATTTTAGTTGGACTAGAAAGTTCTAAGAATATATGGC-AAACAATGTGCCAGAAATCTCATGCTCATTTACATCCCCAAGTTATTCTTAAATTAAGA-TTTTTTTT-ATCACCACCCCA----GTACTTCACCCCTGATGTCCTAAAGGCTTAAAATCTGAAAATTTTACTGAT-CTTCAAAACCCAG i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16856772 505 + 184069350 cttatgattaaatcctccaaat--aacagcggtccattattggtgagagagactgtctcacttttagacaattttaactggcagaaattttctttctcgtatt--ATCTAGCTTCTTCATACATCAAGA------GAAGGTACA--------------------TAGACACAAAGAGAGAGAGCAAGAGAGCTATACACAAAAGATAAAGCAGATCTTTGTCACAATGTTTAGACATACAGAAATACGCTTTCAACGTGGTAGAGGATGGAAGGAGAGGTGGAGGAGGAGGGGGTGAAAAGATCTAAAAGTAAAATATTTATATGAAGAGTACTTTGCTTCTAATCATGCTGTATTTTAGGTGGACTAGAAAATTCTAAGAATATATGGC-AAACAATATGCCAGAAATCTCATGCTCATTTACATCCCCAAGTTATTCTTAAATTAAGATTTTTTTTTTATCAAAACCCCA----GTACTTCACCCCTGACATCCTAAAGGCTTAAAATCTGAAAATTTTACTGAT-CTTCAAAACCCAA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20906531 504 + 189454096 CTTATGATTAAATCCTCCAAAT--AACAGCGGTCCATTATTGGTGAGAGAGACTGTCTCACTTTTAGACAATTTTAACTGGCAGAAATTTTCTTTCTCGTATT--ATCTAGCTTCTTCATACATCAAGA------GAAGGTACA--------------------TAGACACAAAGAGAGAGAGCAAGAGAGCTATACACAAAAGATAAAGCAGATCTTTGTCACAATGTTTAGACATACAGAAATACGCTTTCAACGTGGTAgaggatggaaggagaggtggaggaggaggGAGTGAAAAGATCTAAAAGTAAAATATTTATATGAAGAGTACTTTGCTTCTAATCATGCTGTATTTTAGGTGGACTAGAAAATTCTAAGAATATATGGC-AAACAATATGCCAGAAATCTCATGCTCATTTACATCCCCAAGTTATTCTTAAATTAAGA-TTTTTTTTTATCAAAACCCCA----GTACTTCACCCCTGACATCCTAAAGGCTTAAAATCTGAAAATTTTACTGAT-CTTCAAAACCCAA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16497029 504 + 178775436 CTTATGATTAAATCCTCCAAAT--AACAGCGGTCCATTATTGGTGAGAGAGACTGTCCCACTTTTAGACAATTTTAACTGGTAGAAATTTTCTTTCTCGTATT--ATCTAGCTTCTTCATACATCAAGA------GAAGGTACA--------------------TAGACActaagagagagagcaagagagctatacacaaaagataaagcaGATCTTTGTCACAATGTTTAGACATACAGAAATACGCTTTCAACGTGATAGAGGATGGAaggagaggtggaggaggagggggtgaAAAGatctaaaagtaaaatatttatatgaagaGTACTTTGCTTCTAATCATGCTGTATTTTAGGTGGTCTAGAAAATTCTAAGAATATATGGC-AAACAATATGCCAGAAATCTCATGCTCATTTACATCCCCAAGTTATTCTtaaattaaga-tattttttaatcaaaaccCCA----GTACTTCACCCCTGACATCCTAAAGgcttaaaatctgaaaattttacTGAT-CTTCAAAACCCAA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19979743 503 - 48547382 cttatgattaaatcctccaaat--aacagcgatccattattggtgagagagactgtcccacttttagacaattttaactggtagaaattttctttctcgtatt--ATCTAGCTTCTTCATACATCAAGA------GAAGGTACA--------------------TAGACACAAAGGGAGAGAGCAAGAGAGCTATACACAAAAGATAAAGCAGATCTTTGTCACAATGTTTAGACATACAGAAATACACTTTCAACGTGGTAAaggatggaaggagaggtggaggaggagggggTGAAAAGATCTAAAAGTAAAATATTTATATGAAGAGTACTTTGCTTCTAATCATGCTGTATTTTAGGTGGACTAGAAAATTCTAAAAATATATGGC-AAACAATATGCCAGAAATCTCATGCTCATTTACATCCCCAAGTTATTCTTAAATTAAGA-TATTTTTT-ATCAAAACCCCA----GTATTTCACCCCTGACATCCTAAAGGCTTAAAATCTGAAAATTTTACTGAT-CTTCAAAACCCAA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21340542 496 - 190850796 catataattaaatcctccaaat--gacagaagcccattattggtaagtgaggctgttacattattagacaattttaactggtagaaatcttctttctcatatt--ATCTTGCTTC-TCACATGTCAAGA------GAAGGT--A--------------------TGCATACAGAGAGAGAGAGC----GAGCTATATACAAAAGATATAGCAGATCTCTGTCACAATGTTTAGACATAAAGAAATATACTTTCAACATAGTAGAGAATGAAGGAAGAGGTGGAGGAGGAAGGGGTGAAAAGATCTAAAAGTAAAATGTTTCTATGAAGAGTAGTTCACTCCTAATTACACTGTATTTTAGGTGGACTAGAAAGGTATAAGAATATATGGCAAAACAATATGCCAGAAATGTCATGCTCATTTACATCCCCAAGTTATTCTTCAATTAAGA-CATTTTTT-ATTGCAGGCTCA----ATACTTCA-CCCTGATATCCTAAAGGCTTAAAAACTGAACATTTTACTGAT-CTTCAAAATCTAG i calJac3.chr3 C 0 C 0 s mm10.chr5 49315282 380 + 151834684 TTTAGTATTGAATATTCAAAAT--GACA-------------------AAAGCCTCTCCCATTGCTAGATAATATTAG-------------TCATATTTATGCTAAATTTGGCTTTTTCACAGATACAGAGACTATGAACACATT--------------------TAGAGACAGAAAGAGATGGAGAGAGAGAGACATACAAAAGACTCAGCACA--CTTGTCATAAGATTTAGACATAGAAAAAGGTTATTTCTATATTAT---TTGTAGAAGAAGCTGTAAGGGAGAAAG----------------AATTGAAATATTTA-------------------------------------------ACTATAAAAGTGTTAA-----------AAACCAT------------------TAGTTTTCA--------TTATTCTAAAATCAAGA--GTCTTGA-ATGATAAAGCCAGTATGTACCTCA-CTCTGGTATCCTGAAGTCTTACAAGCTTAAAA-TGTATTTTT-CTTTAGAGTCCAA i mm10.chr5 I 236 C 0 s canFam3.chr3 3904560 497 - 91889043 ctcacgactgagtcctcccaatgagacagaagcccattatttatgagacaggctgtcccactatgagacaat----attgttacaaatcctcctcctagtgCA--ATCCAGCGTCTT--CACGTGGAGA------GAAAGCACAAATGTGCGCACGCGTACAAGTACACACTCAAGCACACA--CACAGGGCTACGTAGAAGGGATA---CAGATCTCTGTCAGTATGTTTAGACATACAGAAATACACTTTCGACATGAT----GATGAGGGTGGAGGTGGAGGAGGTAA-AGTGAAGTG--TTGAACGTGAAGTGTTTATATGAGGAATAATTTATTGCTAACCACGTTGTATTTTAGACA-AGTAGCAGGTTCAAAGACTATATCGTAAAATACTGCACCACAAATTCCATCCTCATTTTCATCTCCTTGTTATTCTTGAATCAAGA-CATTTTTT-ATC-------------ACTCCTCA-CCCCGACATCCTAAAG-CTAAGAAACTTAAAATTCTACTGATAATTCAAAATCTAA i canFam3.chr3 C 0 I 180 a score=4967196.000000 s hg38.chr4_KI270790v1_alt 217493 1554 + 220246 TCAAAG-TTTGCACCATTAGGGCTTTATGGGAACAAGTC-TGTAAC-TAGTGATGTTTTGCATAGTCCTCTGATATACAGGACATAACTCATGGTTAATGTCATCATGTGGTTATCTATATAATATTGTCAC-----------CATATGCCATCAAGAGATGAGATTGCCATTTTCTTTCCATGTACTAAAAGAAT-------ACCAGACAACTTGGCTAAATACATATGGACCTCCAC-CAAAAAATCAGAACA-----------GCTAAG-ACAACTTGAGAGAAAGGGC-------AGGGC-------TCAAT----GAGAAACCT-----CAGAATTACCAGTTGACTAGTATTCCTTATTTATTATATATGCTCCAGCTATTCCAATAATTCCAAACACACataaattacatat--atataaaaatatatatatatttaATTGAATAAACTTGATTGTATAATTTTGGCTTAGTTTTTAGATACATCATGAGTTGGTACACTTACTTCTTCAGTTTATAAATTTTTAAAATATGTAAAATAGGTGTAATGTGCCCAGTAATGAGATAGCTTGGAAAATCTAC-TAGTAAAAATAATTATTCTTCA--TTAACTCCCTTTATAAATTATATTAGATTATGCTTGAAGACCTTTTCAGTGCTACGTGCTAGGATGAAATGATATATAATTGAGAAAAT---AATAAAAGACATCAAAACAATAGCTCC--AGGTCTTAAAATATGAGATATTTCAAAGCATACTAAGTGATTG-CCCATCTCTCCTTAATTACTAAGTTCAATTCCCGAGAAGTGA-GAAAGCAGAGGCGTAATATTGATGATCACCTATTGTGTTCTTTCTGGCTAGTCTGAAGCTCTGCATTTTT--ATTAAATTTCCACAATAA--C--------TAAAATAGTTAATCTTGCCCAAAGCCAATCCAGCTGTTTCAAAGCAGGAAGGAGCCTAATGCAGAGTTGCAC--AGCCACAACTTGGGGGCATCCTACCCTTCA-CTGATGCCTCCCAGAGCCTGCTCCTAATGAAGAGCCCCTGCCTCCACTCTCCTCATCCCAT-TCCAGCACTGATCTGGGGTATTCGG-TCTTGCCTCAGCTATGACTGCCTCAATACATTCGCCTCTCAAGGTGGCATCAGGGGAAGGAGAATACCAGTGCTGAAAAGTGATACTCTGTCTACTGATGTCTGCTCAGACTCTGAGGAGTAATCAGGGTCCAAATCATATAAAGGTAAATGAGAGAAATACAATTTCAAAATTAAAAGATT--CATACCTACTCCAATCACAAAAtattgc-tcttctatttctgttctatttctatataa--tt---tcACCTAACCAAAATTACTTAAAAAGTATATTGATATTAAAGATAACATGTTT----------------------TAAGAGAAA----------------------------------------------------ATTAAACTTCCTATTTAAC-----------------------------------------------------------------------------------------------TTTTAATAGAAAA-TAGAAAACTTTCACAA-------Actgtactctccccaagtagaaaagtacgaatctcaacgctgagcaagagtataagactttccttgggcactc--------------atggatgattt---tatctgctacgtctttgtgttttatacttctc--ttcattttttatgcgccaatcccaatttttactccagtaccctg-----------------ttgtaattaataatc s panTro4.chr4 21606460 1553 + 193495092 TCAAAG-TTTGCACCATTAGGGCTTTATGGGAACAAGTC-TGTAAC-TAGTGATGTTTTGCATAGTCCTCTGATATACAGGACATAACTCATGGTTAATGTCATCATGTGGTTATATATATAATATTGTCAC-----------CATATGCCATCAAGAGATGAGATTGCCATTTTCTTTCCATGTACTAAAACTAC-------ACCAGACAACTTGGCTAAATACCTATGGACCTCCAC-CAAAAAATCAGAACA-----------GCTAAG-ACAACTTGAGAGAAAGGGC-------AGGGC-------TCAAT----GAGAAACCT-----CAGAATTACCAGTTGACTAGTATTCCTTATTTATTATATATGCTCCAGCTATTCCAATAATTCCAAACACACataaattacatat--atataaaaatatatatatatttaattGAATAAACTTGATTGTATAATTTTGGCTTAGTTTTTAGATACATCATGAGTTGGT-CACTTACTTCTTCAGtttataaatttttaaaatatgtaaaataGGTGTAATGTGCCCAGTAATGAGATAGCTTGGAAAATCTAC-TAGTAAAAATAATTATTCTTCA--TTAACTCCCTTTATAAATTATATTAGATTATGCTTGAAGACCTTTTCAGTGCTACGTGCTAGGATGAAATGATATATAATTGAGAAAAT---AATAAAAGACATCAAAACAATAGCTCC--AGGTCTTAAAATATGAGATATTTCAAAGCATACTAAGTGATTG-CCCGTCTCTCCTTAATTACTAAATTCAATTCCCGAGAAGTGA-GAAAGCAGAGGCGTAATATTGATGATCACCTATTGTGTTCTTTCTGGCTAGTCTGAAGCTCTGCATTTTT--ATTAAATTTCCACAATAA--C--------TAAAATAGTTAATCTTGCCCAAAGTCAATCCAGCTGTTTCAAAGCAGGAAGGAGCCTAACGCAGAGTTGCAC--AGCCAGAACTTGGGGGCATCCTACCCTTCA-CTGATGCCTCCCAGAGCCTGCTCCTAATGAAGAGCCCCTGCCTCCACTCTCCTTGTCCCAT-TCCAGCACTGATCTGGGGTATTCGGTTCTTGCCTCAGCTATGACTACTTCAATACATTCGCCTCTCAAGGTGGCATCAGGGGAAGGAGAATACCAGTGCTGAAAAGTGATACTCTGTCTACTGATGTCTGCTCAGACTCTGAGGAGTAATCAGGGTCCAAATCATATAAAGGTAAATGAGAGAAATACAATTTCAAAATTAAAAGCTT--CATACCTACTCCAATCACAAAATATTGC-TCTTCTATTTCTGTTCTATTTCTATATAA--TT---TCACCTAACCAAAATTACTTAAAAAGTATATTGATATTAAAGATATCATGTTT----------------------TAAGAGAAA----------------------------------------------------ATTAAAC-TCCTGTTTAAC-----------------------------------------------------------------------------------------------TTTTAATAGAAAA-TAGAAAACTTTCACAA-------Actgtactctccccaagtagaaaagtacgaatctcaatgctgagcaagagtataagactttccttgggcactc--------------atggatgattt---tatctgctacgtctttgtgttttatacttctc--ttcattttttatgagccaatcccaatttttactccagtaccctg-----------------ttgtaattaataatc i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21782894 1551 + 198332218 TCAAAGTTTTGCACCATTAGGGCTTTATGGGAACAAGTC-TGGAACAAAAAAATGTTGTGCATAGTCCTCTGATATAAAG-----AACTCATGGTTAATGTAATCATGTAAATATCTATATAATATTGTCAC-----------CATATGCCATCAAGAGATGAGATTGCCATTTTCTTTCCATGTACTAAAAGAAT-------ACCAGACAACCTGGCTAAACACATATGGACCTCCAC-CAAAAAATCAGAACA-----------GCTAAG-ACAACTTGAGAGAAAGGGC-------AGGGC-------TCAAT----GAGAAACCT-----CAGAATTACCAGTTGACTAGTATTCCTTATTTATTATATATGCTCCAGCTATTCCAATAATTCCAAACACACataaattacatat--atat-aaaatatatatatatttaattGAATAAACTTGATTGTATAATTTTGGCTTAGTTTTTAGATACATCATGAGTTGGT-CACTTACTTCTTCAGTTTATAAATTTTTAAAATGTGTAAAATAGGTGTAACGTGCCCAGTAATGAGATAGCTTGGAAAATCTAC-TAGTAAAAATAATTATTCTTCA--TTAACTCCCTTTATAAATTATATTAGATTATGCTTGAAGACCTTTTCAGTGCTACATGCTAGGATGAAATGATATATAATTGAGAAAAT---AATAAAAGACATCAAAACAATAGCTCC--AGGTCTTAAAATATGAGATATTTCAAAGCATACTAAGTGATTG-CCCGTCTCTCCTTAATTACTAAATTCAATTCCCGAGAAGTGACAAAAGCAGAAGTATAATATTGATGATCACCTATTGTGTTCTTTCTGGCTAGTCTGAAGCTCTGCATTTGT--ATTAAATTTCCACAATAA--C--------TGAAATAATTAATCTTGCCCAAAGTCAATCCAGCTGTTTCAAAGCAGGAAGGAGCCTAATGCAGAGTTGCAC--AGCCAGAACTCCGGGGCATCCTACCCTTCG-CTGATACCTCCCAGAGCCCGCTCCTAACGAAGAGCTGCTGCCTCCACTCTCCTCGTCCCAC-TCCAGCACTGATCTGGGGTATTCGGTACTTGCCTCAGCTATGACTGCCTCAATACATTTGCCTGTCAAGGTGGCATCAGGGGAAGGAGAATACCAGTGTTGAAAAGTGATACTCTGTCTACTGATGTCTGCTCAGACTCCGAGGAGTAATCAGGGTCCAAATCATATAAAGGTAAATGAGAGAAATACAATTTCAACATTAAAAGCTT--CATACCTACTCCAATCACAAAATATTGC-TCTTCTATTTCTGCTTTATTTCTATATAA--TT---TTACCTAACCAAAATTACTTAAAAAGTATATTGATATTAAAGATAACATGTTT----------------------TAAGAGAAA----------------------------------------------------ATTAAACTTCCTATTTAAC-----------------------------------------------------------------------------------------------TTTTAATAGAAAA-TAGAAAACTTTCACAA-------Actgtactctccccaagtaggaaagtatgaatctcaacgctgagcaagaggataagactttccttgggcactc--------------atggatgattt---tatctgctatgtctttgtgttttatacttctc--ttcattttttatgagccaatcccaatttttactccagtgccctg-----------------ttgtaattaataatc i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20391178 1553 - 85365473 TCAACA-TTTGTACCATTAGGGCTTTACGCGAACAAGTC-TCTAAC-TAGTGATGGTTTGCATAGTCCTCTGATATACAGGACATAACTCATGGTTAATGTAATCATGTGGTTAGCTATATAATATTGTCAC-----------CATATGCCATAAAGAGATGAAATTGCCATTTTCTTTTCATGTACTGAAAGAAT-------ACCAGACAACTTTGCTAAATACAAATGGACCTCCAC-CAAAAAATCAGAACA-----------GCTGAG-ACAACTTGACAGAAAGGGC-------AGGGC-------TCAAT----GAGAAACCT-----CAGAATTACGAGTTGACTAGTATTCGTTATTTATTATATATGCTCCAGCTATTCCAATAATACCAAatacacataaattacatat--atatataagtatatata----taATTGAATAAACTTGATTGTATAATTTTGGCTTAGTTTTTAGATACATCATGAGTTGGT-CACTTACTTCTTCAGTTTATAAATTTTTAAAATACGTAAAATAGGTGTAATGTGCCCAGTAATGAGATAGCTTGGAAAATCTAC-CAGTAAAAATAATTATTCTTCA--TTAACTCCCTTAATAAATTATATTAGATTATGCTTGAAGACCTTTTCAGTGCTACATGCTAGGATGAAATGATATTTAATTGAGAAAAT---AATAAAAGACATCAAAACAATAGCTCC--AGGTCTTAAAATATGAGATATTTCAAAGCATACTAAGTGATTG-CCCATCTCTCCTTAATTACTAAATTCAATTCCCGAGAAGTGA-GAAAGCAGAGGCGTAATATTGATGATCACCTATTGTGTTCTTTCTGGCTAGTCTGAGGCTCTGCATTTTT--ATTAAATTTCCACAATAA--C--------TAAAATAGTTCATCTTGCCCAAAGTCAACCCAGCTGTTTCAAAGCAGGAAGAAACCTAACGCAGAGTCGCAC--AGCCAGAACGCGGGGGCATCCTACCCTTCA-CTGATGCCTCCCAGAGCCTGCTCCTAATGAAGAGCCCCTGCCTCCACTCTCCTTGTCCCAC-TCCAGCACTGATCTGGGGTATTCAGTTCTTGCCTCAGCTATGACTGCCTCAATACATTCGCCTCTCAAGGTGGCATCAACGGAAGGAGAATACCAGTGTTGAAAAGTGATACTCTGTCTACTGATGTCTGCTCAGACTCTGAGGAGTAATCAGGGTCCAAATCATATAAAGGTGAATGAGAGAAATACAATTTCAAAATTAAAAGCTT--CACACCTACTCCAATCACAAAAtattgc-tcttctatttctgttttatttctatataa--tttcATCACCTAACCAAAATTACTTAAAAAGTATATTGATATTAAAGATAACATGTTT----------------------TAAGAGAAA----------------------------------------------------ATTAAACTTCCTATTTAAC-----------------------------------------------------------------------------------------------TTTTAATAGCAAA-TAGAAAACTTTCACAA-------ACTGTGCTCTCCCCAAGTAGGAAAGTATGAATCTCAACCCTGAGCAAGAGGTTAAGACTTCCCTTGGGCACTC--------------GTGGATGATTT---tatctgctatgtctttgtgttttatacttctc--ttcagtttttatgagccaatcccaatttttactccagtaccctg-----------------ttgtaattaataatt i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16857277 1557 + 184069350 TCGAAG-ATTGCACTCTTAGGGCTTTCTGGGAACAAGTC-TGTAAC-TAGTGAGGTTTTGCATAGCCCTCTGATACACAGGACATAACTCATGGTTAATGTAATAATGTGGTTATCTACATAATATTGTCAC-----------CATATGCCATCAAGAGATAAGATTGCCATTTTCTTTCCATGTACTAAAAGAAT-------ACCAGATAACTTTGCTAAATAGATACGAACCTCCAC-CAAAAAATCAGAACA-----------GCTAAGAACAACTTGAAAGAAAGGGC-------AGGGC-------TCAAT----GAGAAACCTCAGAACAGAATTAT-AGTTTTCTAGTATTCCTTATTTATTATATATGCTTCAGGTATTCCAATAGTTCCAAATACaaataaattacatat--atgtaaaaatatatatt----taaCTGAATAAACTTGATTGTATAATTTTGGCTTAGTTTTTAGATACATCATGAGTTGGT-CACTTACTTCTTCAGtttataaatttttaaaatatttaaaataGGCGTAATGTGTCCAGTAATGAGATAGCTTGGAAAATCTAC-TAGTAAAAATAATTATTATTCA--TTAACTCCCTTTATAAATTACATTAGATTATGCTTGAAGACCTTTTCAGTGCTACATGCTAGGATTAAATGATATATAATTGAGCAAAT---AATACAAGACATCAGAACAATAGCTCC--AGGTCTTAAAATAAGAAATATTTCAAAGCATACTAAGTGATGG-CCCATCTCTCCTTAATTACTACATTCAATTCCCGAGAAGTGA-GAAAGCAGAGGCGTAATATTGATGATCACCTATTGTGTTCTTTCTGGCTAGTCTGAAGCTCTGCATTTTT--ATTTAATTTCCACAATAA--C--------TAAAATAGTTAATCTTGCCCAAAGTCAACCCAGCTGTTTCAAAGCAGGAAGGAGCCTAATGCAGAGTTGGAC--AGCCAGAACTCAGGGGCATCCTACCCTTTA-CCGATGCCTCCCAGAGCCTGCTCCTAATGAAGAGCCCCTGCCTCCACTCTCCTCGCCCCAC-TCCAGCACTGATCTGGGGTATTCAGTTCTTGCCTCAGCTCTGACGGCCTCAATACATTCGCCTCTCAAGGTGGCATCAGGGGAAGAATAAAACCAGTATTGAAAAGTGATACTTTGTCTACTGATGTCTGCTCAGACTCTGAGGGGTAAGCAGGGTCCAAATCATATAAAGGTAAATGAGAAAAATACAATTTCCAAAATAAAAGCTTAACACACCTACTCCAATCATAAAACATTGC-TCTTCTATTTCTGTTTTATTTCTGTATAA--TT---TCACCTAACCAAAATTACCTAAAAAGTATATTGATATTAAAGATAACACGTTT----------------------TAAGAGAAA----------------------------------------------------ATTAAACTTCCTATTTAAC-----------------------------------------------------------------------------------------------TTTTAATAGAAAA-TAGAAAACTTTCACAA-------ACTGTGCTCTCCCCAAGTAGGAAAGCATGAATTTCAACCCTGAGTAAGAGGATAAGACTTTCCTTGGAAACTC--------------ATGGATGATTT---tacctgctatgtctttgtgctttatccttctc--ttcatttttaatgagccaatcccaatttttactccagtaccctg-----------------ttgtaattaataatc i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20907035 1553 + 189454096 TCGAAG-ATTGCACTCTTAGGGCTTTCTGGGAACAAGTC-TGTAAC-TAGTGAGGTTTTGCATAGCCCTCTGATACACAGGACATAACTCATGGTTAATGTAATCATGTGGTTATCTACATAATATTGTCAC-----------CATATGCCATCAAGAGATAAGATTGCCATTTTCTTTCCATGTACTAAAAGAAT-------ACCAGATAACTTTGCTAAATAGATATGAACCTCCAC-CAAAAAATCAGAACA-----------GCTAAGAACAACTTGAAAGAAAGGGC-------AGGCC-------TCAAT----GAGAAACCT-----CAGAATTATGAGTTTTCTAGTATTCCTTATTTATTATATATGCTTCAGGTATTCCAATAGTTCCAAATACAAATAAATTACATAT--ATGTAAAAATATATATT----TAACTGAATAAACTTGATTGTATAATTTTGGCTTAGTTTTTAGATACATCATGAGTTGGT-CACTTACTTCTTCAGTTTATAAATTTTTAAAATATTTAAAATAGGCGTAATGTGTCCAGTAATGAGATAGCTTGGAAAATCTAC-TAGTAAAAATAATTATTATTCA--TTAACTCCCTTTATAAATTACATTAGATTATGCTTGAAGACCTTTTCAGTGCTACATGCTAGGATTAAATGATATATAATTGAGCAAAT---AATACAAGACATCAGAACAATAGCTCC--AGGTCTTAAAATAAGAAATATTTCAAAGCATACTAAGTGATGG-CCCATCTCTCCTTAATTACTACATTCAATTCCCGAGAAGTGA-AAAAGCAGAGGCGTAATATTGATGATCACCTATTGTGTTCTTTCTGGCTAGTCTGAAGCTCTGCATTTTT--ATTTAATTTCCACAATAA--C--------TAAAATAGTTAATCTTGCCCAAAGTCAACCCAGCTGTTTCAAAGCAGGAAGGAGCCTAATGCAGAGTTGGAC--AGCCAGAACTCAGGGGCATCCTACCCTTTA-CCGATGCCTCCCAGAGCCTGCTCCTAATGAAGAGCCCCTGCCTCCACTCTCCTCGCCCCAC-TCCAGCACTGATCTGGGGTATTCAGTTCTTGCCTCAGCTCTGACGGCCTCAATACATTCGCCTCTCAAGGTGGCATCAGGGGAAGAATAAAACCAGTATTGAAAAGTGATACTTTGTCTACTGATGTCTGCTCAGACTCTGAGGGGTAAGCAGGGTCCAAATCATATAAAGGTAAATGAGAAAAATACAATTTCCAAAATAAAAGCTTAACACACCTACTCCAATCACAAAACATTGC-TCTTCTATTTCTGTTTTATTTCTGTATAA--TT---TCACCTAACCAAAATTACCTAAAAAGTATATTGATATTAAAGATAACACGTTT----------------------TAAGAGAAA----------------------------------------------------ATTAAACTTCCTATTTAAC-----------------------------------------------------------------------------------------------TTTTAATAGAAAA-TAGAAAACTTTCACAA-------Actgtgctctccccaagtaggaaagcatgaatttcaaccctgagtaagaggataagactttccttgggcactc--------------atggatgattt---tacctgctatgtctttgtgctttatccttctc--ttcatttttaatgagccaatcccaatttttactccagtaccctg-----------------ttgtaattaataatc i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16497533 1548 + 178775436 TCGAAG-ATTGCACTCTTAGGGCTTTCTGGGAACAAGTC-TGTAAC-TAGTGAGGTTTTGCATAGCCCTCTGATACACAGGACATAACTCATGGTTAATGTAATCATGTGGTTATCTACATAATATTGTCAC-----------CATATGCCATCAAGAGATAAGAGTGCCATTTTCTTTCCATGTACTAAAAGAAT-------ACCAGATAACTTTGCCAAATAGATACGAACCTCCAC-CAAAAAATCAGAACC-----------GCTAAGAACAACTTGAAAGAAAGGGC-------AGGGC-------TCAAT----GAGAAACCT-----CAGAATTATGAGTTTTCTAGTATtccttatttattatatatgcttCAGGTATTCCAATAGTtccaaatacaaataaattacatat--atgtaaaaatatatatt----taactgaATAAACTTGATTGTATAATTTTGGCTTAGTTTTTAGATACATCATGAGTTGGT-CACTTACTTCTTcagtttataaatttttaaaatatgtaaaataggcGTAATGTGTCCAGTAATGAGATAGCTTGGAAAATCTac-tagtaaaaataattattattca--ttaactccctttataaattacattagATTATGCTTGAAGACCTTTTCAGTGCTACATGCTAGGATTAAATGATATATAATTGAGCAAAT---AATACAAGACATCAGAACAATAGCTCC--AGGtct-----taagaaatatttcaaagcatACTAAGTGATGG-CCCATCTCTCCTTAATTACTACATTCAATTCCCGAGAAGTGA-GAAAGCAGAGGCGTAATGTTGATGATCACCTATTGTGTTCTTTCTGGCTAGTCTGAAgctctgcattttt--atttaatttccacaataA--C--------TAAAATAGTTAATCTTGCCCAAAGTCAACCCAGCTGTTTCAAAGCAGGAAGGAGCCTAATGCAGAGTTGGAC--AGCCAGAACTCAGGGGCATCCTACCCTTTA-CCGATGCCTCCCAGAGCCTGCTCCTAATGAAGAGCCCCTGCCTCCACTCTCCTCGCCCCAC-TCCAGCACTGATCTGGGGTATTCAGTTCTTGCCTCAGCTCTGACGGCCTCAATACATTCGCCTCTCAAGGTGGCATCAGGGGAAGAATAAAACCAGTATTGAAAAGTGATACTTTGTCTACTGATGTCTGCTCAGACTCTGAGGGGTAAGCAGGGTCCAAATCATATAAAGGTAAATGAGAGAAAtacaatttccaaaataaaagctTAACACACCTACTCCAATCACAAAACATTGC-TcttctatttctgtttcatttccgTATAA--TT---TCACCTAACCAAAATTATCTAAAAAGTATATTGATATTAAAGATAACACATTT----------------------TAAGAGGAA----------------------------------------------------ATTAAACTTCCTATTTAAc-----------------------------------------------------------------------------------------------ttttaatagaaaa-tagaaaactttcaCAA-------ACTGTGCTCTCCCCAAGTAGGAAAGCATGAATTTTAACCCTGAGTAAGAGGATAAGACTTTCCTTGGGCACTC--------------ATGGATGATTT---TACCTGCTATGTCTTTGTGCTTTAtccttctc--ttcattttcaaTGAGCCAATCCCAATTTTTACTCCAGTACCCTG-----------------TTGTAATTAATAATC i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19980246 1553 - 48547382 TCGAAG-ATTGCACTCTTTGGGCTTTCTGGGAACAAGTC-TGTAAC-TAGTGAGGTTTTGCATAGCCCTCTGATACACAGGACATAATTCATGGTTAATGTAATCATGTGGTTATCTATATAATATTGTCAC-----------CATATGCCATCAAGAGATAAGATTGCCATTTTCTTTCCATGTACTAAAAGAAT-------ACCGGGTAACTTTGTTAAATAGATACGAACCTCCAC-CAAAAAATCAGAACA-----------GCTAGGAACAACTTGAAAGAAAGGGC-------AAGGC-------TCAAT----GAGAAACCT-----CAGAATTATGAGTTGACTAGTATTCCTTATTTATTATGTATGCTCCAGGTATTCCAATAATTCCAAATACAAATAAATTACATAT--ATGTAAAAATATATATT----TAATTGAATAAACTTGATTGTATAATTTTGGCTTAGTTTTTAGATACATCATGAGTTGGT-CACTTACTTCTTCAGTTTATAAATTTTTAAAATATGTAAAATAGGTGTAATGTGTCCAGTAATGAGATAGCTTGGAAAATCTAC-TAGTAAAAATAATTATTATTCA--TTAACTCCCTCTATAAATTACATTAGATTATGCTTGAAGACCTTTTCAGTGCTACATGCTAGGATTAAATGATATATAATTGAGCAAAT---AATATAAGACATCAGAACAATAGCTCC--AGGTCTTAAAATAAGAAATATTTCAAAGCATACTAAGTGATTG-CCCATCTCTCCTTAATTACTACATTCAATTCCTGAGAAGTGA-GAAAGCAGAGGCGTAATATTGATGATCACCTATTGTGTTCTTTCTGGCTAGTCTGAAGCTCTGCATTTTT--ATTTAATTTCCACAATAA--C--------TAAAATAGTTAATCTTGCCCAAAGTCAACCCAGCTGTTTCAAAGCAGGAAGGAGCCTAATGCAGAGTTGGAC--AGCCAGAACTCAGGGGCATCCTACCCTTTA-CCGATGCCTCCCAGAGCCTTCTCCTAATGAAGAGCCCCTGCCTCCACTCTCCTCGCCCCAC-TCCAGCACTGATCTGGGGTATTCAGTTCTTGCCTCAGCTCTGACGGCCTCAATACATTCGCCTCTCAAGGTGGCATCAGGGGAAGAATAAAACCAGTATTGAAAAGTGATACTTTGTCTACTGATGTCTGCTCAGACTCTGAGGGGTAAGCAGGGTCCAAATCATATAAAGGTAAATGAGAGAAATACAATTTCCAAAATAAAAGCTTAACACACCTACTCCAATCACAAAACATTGC-TCTTCTATTTCTGTTTTATTTCTGTATAA--TT---TCACCTAACCAAAATTACCTAAAAAGTATATTGATATTAAAGATAACACGTTT----------------------TAAGAGAAA----------------------------------------------------ATTAAACTTCCTATTTAAC-----------------------------------------------------------------------------------------------TTTTAATAGAAAA-TAGAAAACTTTCAGAA-------Actgtgctctccccaagtaggaaagtatcaatctcaaccctgagtaagaggataagactttccttgggcactc--------------atggatgattt---tatctgctacgtctttgcgctttatacttctc--ttcattttaaatgagccaatcccaatttttactccagtaccctg-----------------ttgcaattaataatc i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21341038 1535 - 190850796 TCAAAG-ATTGGACTATTAGGCCTTTATGGGAATAAGTG-TGTAAT-TAGTGATGTTTTACATAGTCCTCTGATATAAAGGATATAACTCATGGTTAATGTAATCATATGGTTATCTGTACAGTATTGTCAC-----------TGTATGCCATCAAGAGAT-----TGCTATCTTCTTTCTGTGTACTAAAAGAAT-------ACCAGACAATTTTGCTATATAGATATGAACCTCCAC-CAAAATATCGGAACA-----------GCAAAG-ACAACTTGAGAGAAAGGGCAGACCCTAGGGC-------TCAAT----GAGAAACCT-----CAGAATTAGGAGTTGACTGTTATTCTTTATTTATTATATATGCTCCAGCTATTCCAATA-TTCCAAATATGCATAAATTACA--------------TATATATT----TAATTGAATAAAC--AAATGTATAATTTTGGCTTAGTTTTTAGATACATCATGAGTTGGT-C----ACTTCTTCAGtttataaattttttaaatatgttatttaGTTGTAATGTTCCCAGTAATAAGATTGCTTGGAAAATCTAC-TAGTAAAAATAATTCTTCTTCA--TTAACTCCCTTTATAAATTATATTAGATTATGCTTGAAGACCTTTTCATTGCTACATGCTAGGATGAAATGATATATAATTAAGAAAAT---AATATAAGACATCAAAACCATACCTCC--AGGTCTTAAAAGGTGCGATATTTCAAAGCATACTAAGTGAATG-CTCATCTCTCCTTAATTACTAAATTCAATTCCAGAGAAGTGA-GAAAGTAGAGGTGTAATATTAATGCTCACCCATTGTGTTCTTTCTGGCTACCCTAAAACTCTGCAATTTT--ATTTAAATTCCACAATTACTC--------TAAAATATTTAATCTTGCCCAAAGTCAACCGAGCTGTTTCACAGCAGGAAGGAGCCTAACGCAGAGATGCAC--AGGCAGAACCCAGTGGCATCCTACCATACA-CTGATGCCTCCCAGAGCCTGCTCCTAATGAAGAGTCCCTGTTGTCACTTTCCTCGCCCCAC-TCCAACTCTGATTTGGGGTATTCAGTTTTTGCCTTGGCTATGACTGCCTCAATATATTTGCCTCTCAAG--GGCATCAGGGGAAGGAGAACACCAGTGTTGAAAAGTAATAGACTGTCCACAGATGTCTGCTCAGACTCTGAGGCGTAATCAGGATCCAAATCATAT-AAGGTAAATGAGAGAAATATAATTTAAA----AAAAGTTT--CACACCTACTCCAATAACAAAATATTGC-TCTTCTTTTTCTACTTTATTTCTGTATAA--TT---TCACTTAACCAAAATTACTTAAAAGGTATATTGATATTAAAGACAAAATGTTT----------------------CAAGAGAAA----------------------------------------------------ATTAAACTTCCTATTTAAC-----------------------------------------------------------------------------------------------TTTTAACAGAAAA-TAGAAAACTTTCACAA-------Actgtgctctccccaagtaggaaagtatgaatcccaaccctgagcaagag-ataagcttttcactgggtactc--------------atgtttgcttt---ta---------tctttgtgttttatatttctc--ttcatgttttataagccaatcccaatttttactccagtacccggttgtaattaataatcttttgtaattaataatc i calJac3.chr3 C 0 C 0 s mm10.chr5 49315662 1318 + 151834684 CCAAGG-TTCACATTAGTTGG-CTTTATTGGGACAAGTCATGTGAT-TAGCAACATTTCATACAACCCTCTGCTGGCCAGGATATGCGTCATCATTGGGG----CATGTGGTT--TCATACAAGGTGATCAA-----------TGCCTCTCAACAAAACA------AGTTTTCTCTTTGCCGTACACCAAAGAACCTCTTAGAACCTCACAATTTTACTGGATGGATATAAACTTCTGTATGAAATATCAGGAA-------------------ATATTTTAGGGGAAAAAAC-------AGAGT-------TTAATACTCAAGAAACCC-----CAGAATTA-------------AATTTTTAATTTTCATATACATTTCAGTTATTC--ACAATTTCATACATTTGTAAATTACAGATCAATGT---------TATT-----------ATAAA----AGTGTATAATCTTGGCTTAGTGCTTAGTTTTACCATAAGTTGGT-CATTTAATGCTTTTATTTGC-CATTTTCCAAGTATATGTAATAAG---------------AACAATACAACTGGAAAATAATATGCATGAAAAATAATTCTGCTTTAATTCAATTCCATTTTTAATTTAGAGCAGGTTCT-----AAATCCTTGATAATATCATATTCTAGGAT-AAAGAATGTCTATTTAAGAAAAT---AATATAAAACATCACAACAATAGATTTGGAGGCtataaataatgtaatat------aaataatatatcattt-attatCTTC------TTAATGCATTCAATT-AAGAGAAACTA-GAAAAAA-----ATAATATTATTTTTCAGTTGCTGTG-TCTTTCTGGATATTCTAAAGCCCTACGTTTTC--------TTTTCACACTGA--CCACACTCTTAAAATAATCGA-CATGCTCACA--------------TTCATGGCAGGAAACATTTTAGCCCAGAGCTTCTC----CCAGAAGTCACAGAAATCTTACAACTGA-CTCTTGTTTCTCTGAGCTCCCTACTG-------------------------TTCACCCCGCATCCAGCATAGGC--------TTTAGGTCCTGACTCAGGAATGACTGCCTTAG-----TTGCTC-------------------------AACACCAGAGTTGAGAAGAAATAGCCTACAGAGATATGTCTGCTGAGAGTC----AAGTACAATGTGTTCAAA-----------TAAGTACGAGTA--ACCATCCTGA----AGAAGAAT--CATGTCTACTTCTACCCCAAGCCTCTG---GTTCCCTTTTCAATGAATTATTATATTGTCTT---TGAAGGAGTTAAAACTCACTGAAGAGTATAATGAGATTAAAAGTA-----------------------------------------------------------------------------------------------------------AGT-----------------------------------------------------------------------------------------------TTTTAAAAGAAAAGGAGAAAATTTGAACAACGTACCCACTGGACTC-----------GGAAATATCTAATTCAGCTCTGGGAAGCCGAGGGAAGGGTTTCTGGAGTATTC--------------ACTATGACGTT---TGCTTATGACATCATTATGTtt----------------------ataaaccagtcccagtctttacttcagcctcctc-----------------ttataactaat--cc i mm10.chr5 C 0 C 0 s canFam3.chr3 3905237 1704 - 91889043 TAAAAA-TGCGCACTGCTAGGCCTTTATAGGAACAAGTC-TTTAGC-TGGCAACACTTTGCATAGTCTTCTGGTATCTAAGTCCTAACTCATGATTAATTTAATGATGCAATCATCTACACAATACTATCACAATAGTATCATCTTATTCTGTTGAAAAATGAACCTGC--TCTTTTTTGAAGTCTCTAAAAGTGTTCAAAAGATCAGAAAATCTCTCTGGATAGATATGAATCTCCA--TAGAAAAACAGAACCAATTTGTTTGTGCCAGT-ACACCTC-AGAGGCAGGGC-------AGACCCTGGTATTCAAT----ACGAAACTC-----TGAAATTAGGAGCTGA-TGGTAGTCCTTATTTCTTATGTATACACCAATTATTCCAATTATTCCTTATACACATACATT-----------------------------TAACTGAATATCCTTGATTATAGAATCTTGACTTAGTTCTTAGTTATAGCATAAGCTGAT-TACTCATTTATTTGGTTTACCATTTTGTAAAATTTGTAAAATGGGTGTACTATACCAGAAAATGAGATTTATTAGAAAACTGAC-TAGCAAAATTATTCTACCTTGA-CTCAGTTCCTTTCATACACTTTTCTAGATTATGCTTGAAGACCTTT------CCACATTATAGGATGAAATTATATATGATAGACAAAATTAAAAAAAAAATTATCAACACAATAGCCCC--AGACCTGAGAGT-----ATATTTCAAAGCATACAAAGTGATTGATCTGTCTTTCCTTAATCACAGAACTCGGTTCCAGAGAAGTGA-GAAAG---AGAAGTAATACTGGCTGTCACCTGATATGTTCTTTCTGGCTACTCTGAAGGTTGGTATTTTTTAATGCATCAGTCACAATAACTC--------TAAGATCTCTAACGTTGCCCGAAG-CAAGCTAGCTATTTAATAGTGGGCAGGAGTCTATCCCAGCGGTGCAATGAGAACAGACTTAGCAGCGTCCACCCAGCCAGGGGAGACCCACCAGAGCTGATGCCTCCAGAAATGCTCCTGCCTCCTCTCTGCTCCTTTCCC-ACCAGCACTGATCCAGGCCCTTGAGCTCCTGCCTCAGCAATGATACCTCGAATGTAGTCACCTCTCAAGGTGGAGCAAGGG--AGGGGGGCACGAGCCTTGA-AAGTGATAGCCTGTGCACCGGTGTCTGCTCAGACTC------------AGGCTCCGAATCCTAGGACACCACATGGGAGAAAAGAAAT--AGAAACAAAAAGGTT------------------TCAAAATACTGCTTTTTTTATTCCTATTCTATTCCTATACAA--TT---CCACTTACCCCAAAATACTAAAAGTATATGTTGATATTAAAGATAACACACTTGTggggcacctgtgtggctcagtgaatgaagcgtctgcctttgactcaggtcatgatcccagggccctagggttgaaccctacattgagttctctgctcagcagagagtctgcttctccctctccctctgctgctcccctccctgctcatgctttctctctttaaaataaataTCTGAAAGAAATAAAGATAACATGTTTTAATCAGAAG-TGCTTAACTTTCAaca-------gttgtgccgtctccaat---gagagt-tggatctccatgctgagagggagggtgaggcattccctgggcactctcatctctggggcaatggcagcttctcatatctgcaaagtccatattcttggcagttctctattttttttttacaagtcagt-ccaatttttatttcaat--cttg-----------------ttataataaataatt i canFam3.chr3 I 180 I 151 a score=38095.000000 s hg38.chr4_KI270790v1_alt 219047 8 + 220246 ctttatat s panTro4.chr4 21608013 8 + 193495092 ctttatat i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21784445 8 + 198332218 ctttatat i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20392731 8 - 85365473 ctttatat i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16858834 8 + 184069350 ctttatat i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20908588 8 + 189454096 ctttatat i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16499081 8 + 178775436 CTTTATAT i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19981799 8 - 48547382 ctttatat i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21342573 8 - 190850796 ctttatat i calJac3.chr3 C 0 C 0 s mm10.chr5 49316980 8 + 151834684 ctttatat i mm10.chr5 C 0 I 397 s canFam3.chr3 3907092 8 - 91889043 ctttatgc i canFam3.chr3 I 151 C 0 a score=308368.000000 s hg38.chr4_KI270790v1_alt 219055 90 + 220246 tcaacttccca-gttcaaattactgtgtggtttctatctcctgattgggacatgactgatacaCACAGTGAACTGAATTTGATAAACAGTG s panTro4.chr4 21608021 90 + 193495092 tcaacttccca-gttcaaattactgtgtggtttctatctcctgattgggacatgactgatacaCACAGTGAACTGAATTTGATAAACAGTG i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21784453 90 + 198332218 tcaacttcccg-gtttaaattactgtgtggtttctatctcctgactgggacatgactgatacaTACAGTGAACTGAATTTGATAAACAGTG i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20392739 90 - 85365473 tcaacttccct-gttcaaattactgtgtggtttctatctcctgattgggacatgactgatacaCACAgtgaactgaatttgaaaaacagtg i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16858842 88 + 184069350 tcaacttccct-gttcaaattactatgtggtttctatctcctgattgggac--gacttagacACACAGTGAACTGAATTTGAAAAACAGTG i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20908596 90 + 189454096 tcaacttccct-gttcaaattactatgtggtttctatctcctgattgggacatgacttagacaCACAGTGAACTGAATTTGAAAAACAGTG i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16499089 90 + 178775436 TCAACTTCCCT-GTTCAAATTACTATGTGGTTTCTATCTCCTGATTGGGACATGACTTAGACACACAGTGAACTGAATTTGAAAAACAGTG i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19981807 90 - 48547382 ttaacttccct-gttcaaattactgtgtgggttctatctcctgattgggacatgacttagacaCACAGTGAACTGAATTTGAAAAACAGTG i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21342581 90 - 190850796 tcagctttcct-gttcaaattactatatggtttctatctcctgattgggatatgactgatacaCACAGTGAACTGAATTTGAAAAACAGTG i calJac3.chr3 C 0 C 0 s canFam3.chr3 3907100 91 - 91889043 taaaattccctagtttgaattgctgtagggtttctgcctcctgagtgtaccttgattgataTGCACAGTGAACTTTATGTGGGAAACAGTG i canFam3.chr3 C 0 C 0 e mm10.chr5 49316988 397 + 151834684 I a score=1254889.000000 s hg38.chr4_KI270790v1_alt 219145 381 + 220246 AATCGT------ATATAGATACAGATATA----------------------------Ctactgggagatttctcagatggtctcaagtatgttaatacatgtcacaaatttaatagaagaatatgttgtctacagagtttcgcaaacttgt----a----tacagatacacacac------acatatac------------------------------gcaccatggcacaagattagtgctctgtggagcatatattgggacacAG--ATGTTCGAAACTATAGTATAGCAAAATTCCACCTGGTAGAATTTTTAAGACAATGCATGTCCA-TGGGAAATAGC-AGTATAATTTTTGCAAGTCAATAA--------TTTTCTC-------TTTTGATAAGAGAAGCTGTGGAATGATGTTTTTGAATATGTTCATGTCCTTAAGTACCCGAGCGAGAAAACACTTGCTCATGAATA s panTro4.chr4 21608111 380 + 193495092 AAT-GT------ATATAGATACAGATATA----------------------------Ctactgggagatttctcagatggtctcaagtatgttaatacatgccacaaatttaatagaagaatatgttgtctacagagtttcgcaagcttgt----a----tgcagatacacacac------acatatac------------------------------gcaccatggcacaagattagtgctctgtggagcatatattgggacacAG--ATGTTCGAAACTATAGTATAGCAAAATTCCACCTGGTAGAATTTTTAAGACAATGCATGTCCA-TGGGAAATAGC-AGTATAATTTTTGCAAGTCAATAA--------TTTTCTC-------TTTTGGTAAGAGAAGCTGTGGAATGATGTTTTTGAATATGTTCATGTCCTTAAGTACCCGAGCGAGAAAACACTTGCTCATGAATA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21784543 387 + 198332218 AATTGTATAAAGATATAGATACAGATATA----------------------------TTACTGGGGGATTTCTCAGATGGTCTCAAGTATGTTAATACATGTCACAAATTTAATAGAAGAATATGTCGTCTACAGAGTTTCACAAGCTTGT----A----TACAGATACACACAC------ACATACAC------------------------------GCACCATGGCACAAGATTAGTGGTCTGTGGGGCATATATTGGGACACAG--ATGTTCGAAACTATAGTATAGCAAAATTCCACCTGGTAGAATTTTTAAGACAATGCATGTCCA-TGGGAAATAGC-AGTATAATTTTTGCAAGTCAATAA--------TTTTCTC-------TTTTGATAAGAGAAGCTGTGGAATGATGTTTTTGAACACGTTCATGTCTTTAAGTACCTGAGCGAGAAAACACTTGCTCATGAATA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20392829 387 - 85365473 aattgtataaagatacagatacagataca----------------------------ttactgcgggatttctcagagggtctcgagtatgttaatacatgtcacaaatttaatagaagaatatattgtatacagagtttcgcaagcttgt----a----tacagatacacacac------acatatac------------------------------acaccatggcacaagattagtgctctgtggggcatatattaggacacgG--AAGTTTGAAACTATTGTACAGCAAAATTCCACCCGGTAGAATTTTGAAGACAATGCATGTCCA-TGGGAAATGGC-AGTATAATTTTTGCAAGTCAATAA--------TTTTCTC-------TTTTGATAAGAGAAGCTGTGCAATGATGTTTTTGAATATGTTCCTGTCCTTAAGCACCTGAGCGAGAAAACACTCGCTCAAGAATA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16858930 401 + 184069350 AATTGTATAAAGATATAGATACAGATCTA----------------------------TTCCCAGGGCATTTCTCAGAGGGTCTCAAGTATGTTAATACATGTTACAAATTTAATAGAAGAATATATTGTATACAGAGTTTTGCAAGTTTGT----G----TACAGATacacacac------acacacacacacacacacacac----------------gcacCATGGCATAAGATTAGTGCTCTGTGGGACATATATTGGGACACAG--ATGTTCGAAACTATAGTATAGCAAAATTCCACCTGGTAGAATTTTGAAGACAATGCCTGTCCA-TGGGAAACAGC-AGTATAATTTTTGCAAGTCAATAA--------TTTTCTC-------TTTTGATAAGAGGAGCGGTGGAATGACGTTTTTGAATCTGTTCCTGTCCTTAAGCACCTGAGCAAGAAAACACTTGTTCATGAATA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20908686 417 + 189454096 AATTGTATAAAGATATAGATACAGATCTA----------------------------TTCCCAGGGGATTTCTCAGAGGGTCTCAAGTATGTTAATACATGTTACAAATTTAATAGAAGAATATATTGTATACAGAGTTTTGCAAGCTTGT----G----TACAGATacacacac------acacacacacacacacacacacacacacacacacacaTGCACCATGGCATAAGATTAGTGCTCTGTGGGACATATATTGGGACACAG--ATGTTCGAAACTATAGTATAGCAAAATTCCACCTGGTAGAATTTTGAAGACAATGCCTGTCCA-TGGGAAACAGC-AGTATAATTTTTGCAAGTCAATAA--------TTTTCTC-------TTTTGATAAGAGGAGCGGTGGAATGACGTTTTTGAATCTGTTCCTGTCCTTAAGCACCTGAGCAAGAAAACACTTGTTCATGAATA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16499179 399 + 178775436 AATTGTATAAAGATATAGATACAGATCTA----------------------------TTCCCAGGGGATTTCTCAGAGGGTCTCAAGTATGTTAATACATGTTACAAATTTAATAGAAGAATATATTGTATACAGAGTTTTGCAAGCTtgt----a----tacagatacacacac------acacacacacacacacacac------------------gcaccatgACATAAGATTAGTGCTCTGTGGGACATACATTGGGACACAG--ATGTTTGAAACTATAGTATAGCAAAATTCCACCTGGTAGAATTTTGAAGACAATGCCTGTCCA-TGGGAAACAGC-AGTATAATTTTTGCAAGtcaataa--------ttttctc-------ttttgataaGAGGAGCGGTGGAATGACGTTTTTGAATCTGTTCCTGTCCTTAAGCACCTGAGCAAGAAAACACTTGTTCATGAATA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19981897 403 - 48547382 AATTGTATAAAGATATAGATACAGATCTA----------------------------TTACCAGGGGATTTCTCAGAGGGTCTCAAGTATGTTAATACATGTTACAAATTTAATAGAAGAATATATTGTATACAGAGTTTTGCAAGCTTGT----A----TACAGATacacacac------acacacacacacacacacacacaT--------------GCACCATGGCATAAGATTAGTGCTCTGTGGGACATATATTGGGACACAG--ATGTTCGAAACTATAGTACAGTAAAATTCCACCTGGTAGAATTTTGAAGACAATGCATGTCCA-TGGGAAACAGC-AGTATAATTTTTGCAAGTCAATAA--------TTTTCTC-------TTTTGATAAGAGGAGCAGTGGAATGACATTTTTGAATCTGTTCCTGTCCTTAAGCACCTGAGCAAGAAAACACTTGTTCATGAATA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21342671 391 - 190850796 AATTGTATAAAGATATAGATACAGATATA----------------------------TTACCGGGGGATTTCTCAGAGGGTCTCAAGTATATTAATACATGTTATAAATGTAATAGAAGAATATATTATATATACAA-TTCACAAGCTTGTACAAA----CATAGATACACACAC------ACATATAC------------------------------ACACCATGGCACAAGAGTAGTGCTCTGTGGGGCATATATTGGGACGCAG--ATGTCTGAAACTACAGTATAGCGAAATTCCACCTGGTAGGATTTTGAAGACAATGCATGTCCA-TGGGAAACAGCAAGGACAATTTTTGTAAGTCAGTGA--------TTTTCCC-------TTTTGATAAGAGGAGCTGTGGAATGATATTTTTTAATATGCTCGTGTCCTTAAGCATCTGAGTGAGAAAACACTTGGTCACGAATA i calJac3.chr3 C 0 C 0 s mm10.chr5 49317385 383 + 151834684 AATATT------TTATGAGTACACACAGA----------------------------CACCTAGGG--TTGGTCAGAGGATTGAAAGTGCGTTAGCATGTTCCAGGATTACAAAAGAAGTATGTACTTTGTTCAGAGCTTCATATACTTGT----------ACAGATACGCACAC------ATGTTCACATACACACACCTGC----------------ATGTCCTGCTACAAAATTAGCATTCTCTCCTACATTCTCTTGTGAGTAGGCAAATTTTAACCTACTGTGTAACTAAATTCTGTCTGGCAGG-TTCTGAAGACCAATCATGCTCAGTGTGGAATGAA-A---------CTGTAAGTCAGTGT--------TTTCCTCTTTATTGTTTAAATAGAAGGAACTATGGAAGTGATTTTTTAAACAAGTTCCTATCCTTTAACCC--------AACAGTATTTGCTCATGAGCA i mm10.chr5 I 397 C 0 s canFam3.chr3 3907191 413 - 91889043 GACTGAGTAAacacacacacacacacacacacacacacacacacacacacacacCTTTTACTGGAGGA----------GGTCTAAAGTATATTAATATGTG----AAATTTGAAAAGAAAATAAATTACATGTGGAATTCCATAAGCTTGT----GTTCTTATAGATACCCCCCCCCCACTGCACACAC------------------------------ATACCATGACACCAAAACAGTGTTTGGTGGGGCATCAATGGAGACACAG--ACGTTTTCATCTACACCATAGCCGAATCCTCCCTGGTAGGAATCTGAAACCAATACATATTCA-TGGAGAATAACTGGTACAAA--CGACAAATCGATGAATTTTACTTTTACTC-------TTTTGATAAAAGCAGCAATGGAATAATGTTTTTG-GCATTCCCTTGTCATTGAGTACCT----AAGACAATACTTGCTCATGAATA i canFam3.chr3 C 0 I 147 a score=2724638.000000 s hg38.chr4_KI270790v1_alt 219526 711 + 220246 TCCGTATGTTGCT---------------------------------------------------------ACTGCAGGAAGAGTGGAGATTCTT-GTGGGGAGTGGGGA----GGATAACTTCCCCAAG------------------GGATATAGCAGTATCTTAAAATG----GGGACAT-AAAAAAATT-CTCC------CATTTTAGAGATTCTATTTCATATTC-CCTACTTAATAATTCCTTATTCAGAAAGTTTAGCCATTCCCATCAATGCATATGACATCCATGGAAAGTTGGAAACATAATCAGATTTTTGACTCT-TTGCAGCTTGAGACAGTATCATTCAGGAAAAGACCTTGCAGAGGTCTCTGCTTTCAGAAATATATGACTTAAGTAATAAGTGTCAGACACTATCAGAGACTGGGGCTGTGACATGCTGCAGGACAGGGCGCTGGTAGGAGCTATTATTACCTTTTATGTACATTCTCCAAAATGTTGTTAAGAAAATGTAATTACC-ATGGGGAGGCTCATTTATCTAAATTATTCTGGGCTACCAAAGAAACTTGACATGTAAACAATTTAGATAAGGAGTTTAATAATCTAGCAATACCAAGTGTCTGCAATCTGTCACTTGGTGCACTCTTATTCTTCGGTGGAACAGTCTGTTGTCCTTGAAGTGCTATTTCAGTGGAATGTACATTAGGAAGACAAA-CGTGACTCAGTATCAAGATAGTGAGTTTTAATAAAGCTAAAAA------ATG-----TACAAAAC----A----GATTTTCAGCTACTAATATCAAAGTAGAACTCA s panTro4.chr4 21608491 708 + 193495092 TCCGTGTGTTGCT---------------------------------------------------------ACTGCAGGAAGAGTGGAGATTCTT-GTGGGGAGTGGGGA----GGATAACTTCCCCAAG------------------GGATATAGCAGTATCTTAAAA-A----GGGACAT-AAAAAAATT-CTCC------CATTTTAGAGATTCTATTTCATATTC-CCTACTTAATAATTCCTTATTCAGAAAGTTTAGCCATTCCCATCAATGCATATGACATCCATGGAAAGTTGGAAAC--AATCAGATTTTTGACTCT-TTGCAGCTTGAGACAGTATCATTCAGGAAAAGACCTTGCAGAGGTCTCTGCTTTTAGAAATATATGACTTAAGTAATAAGTGTCAGACACTATCAGAGTCTGGGGCTGTGACATGCTGCAGGACAGGGTGCTGGTAGGAGCTATTATTACCTTTTATGTACATTCTCCAAAATGTTGTTAAGAAAATGTAATTACC-ATGGGGAGGCTCATTTATCTAAATTATTCTGGGCTACCAAAGAAACTTGACATGTAAACAATTTAGATAAGGAGTTTAATAATCTAGCAATACCAAGTGTCCGCAATCTGTCACTTGGTGCACTCTTATTCTTCGGTGGAACAGTCTGTTGTCCTTGAAGTGCTATTTCAGTGGAATACACATTAGGAAGACAAA-CGTGACTCAGTATCAAGATAGTGAGTTTTAATAAAGCTAAAAA------ATG-----TACAAAAC----A----GATTTTCAGCTACTAATATCAAAGTAGAACTCA i panTro4.chr4 C 0 C 0 s ponAbe2.chr4 21784930 712 + 198332218 TCCGTGTGTTGCT---------------------------------------------------------ACTGCAGAAAGAGTGGAGATTCTT-GTGGGGAGTGGGGA----CGATAACTTCCCCAAG------------------GGGTATAGCAGTACCTTAAAAGG----GAGACGT-AAAAAAATTCCCCC------CATTTTAGAGATTCTATTTCATATTC-CCTACTTAATAATTCCTTATTCAGAAAGTTTAGCCATTCCCATCAATGCAGGTGACATCCATGGAAAGTTGGAAACATAATCAGATTTTTGACTCT-TTGCAGCTTGAGACAGTATCACTCAGGAAAAGACCTTGCAGAGGTCTCTGCTTTTAGAAATATATGACTTAAGTAATAAGTGTCAGGCACTATCAGAGTCTGGGGCTGTGACATGCTGCAGGATAGGGCACTGGTAGGAGCTATTATTACCTTTTATGTACATTCTCCAAAATGTTGTTAAGAAAATGTAATTACC-ATGGGGAGGCTCATTTATCTAAATTATTCCGGGCTACCAAAGAAACTTGACATGTAAACAATTTAGATAAGGAGTTTAATAATCTAGCAATACCAAGTGTCTGCAATCTGTCACTTGGTGCACTCTTATTCTTCGGTGGAACAGTCTGTTGTCCTTGAAGTGCTATTTCAGCGGAATGTACATTAGGAAGACAAA-CGTGACTCAGTATCAAGATAGTGAGTTTTAATAAGGCTAAAAA------ATG-----TACAAAAC----A----GATTTTCAGCTACTAATATCAAAGTAGAACTCA i ponAbe2.chr4 C 0 C 0 s nomLeu3.chr20 20393216 712 - 85365473 TCCATGTGTTGCT---------------------------------------------------------ACTGCAGGAAGAGTGGAGATTCTT-GTGGGGAGTGGAGA----GGACAACTTCCCCAGG------------------AGGTATAGCAGTATCTTCAAAAG----GGGATGT-AAAAAATTT-CTCC------CATTTTAGAGATTCTATTTCATATTC-CCTACTTAAAAATTCCTTATTCAGAAAGTTTAGCCATTCCCATCAATGCATATGACATCCATGGAAAGTTAGAAACATAATCAGATTTTTGACTCT-TTGCAGCTTGAGACAGTATCATTCAGGAAAAGACCTTGCAGAGGTCTCTGCTTTTAGAAATATATGACTTAAGTAATAAGTGTCAGACACTATCAGAGTCTGGGGCTGTGACATGCTGCAGGACAGGGCGCTGGTAGGAGCAATTATTACCTTTTATGTACATTCTCCAAAATGTTGTTAAGAAAATGTAATTACCAATGGGGAGGCTCATTTATCTAAATTATTCTGGGCTACCAAAGAAACTTGACATGTAAACAATTTAGATAAGGAGTTTAATAATCTAGCAATACCAAGTGTCTGCAATCTGTCACTTGGTGCACTCTTATTCTTCGGTGGAACAGTCTGTTGTCCTTTAAGTGCTATTTCAGTGCAATGTACATTAGGAAGACAAA-CGTGACTCAGTATCAAGATAGTGAGTTTTAATAAAGCTAAAAA------ATG-----TACAAAAC----A----GATTTTCAGCTACTAATATCAAAGTAGAACTCA i nomLeu3.chr20 C 0 C 0 s rheMac3.chr5 16859331 709 + 184069350 TCCATGTGTTGCT---------------------------------------------------------ACTGCAGGAAGAGTGGAGATTCGT-GTGGGGAGTGGGGA----GGATAACTTCCCCAGG------------------GGGTATAGCAGTATCTTAAAAAG----GGGACGT-AAAAAAAAT-CTCC------CATTTTGGAGATTCTATTTCGTATTC-CCTACTTAATAATTCCTTATTCAAAAAGTTTAGTGATTCCCATCAATGCGTATGACATCCATGGAAAGTTAGAAACATAATCAGATTTTTGACTC---TGCAGCTTGAGAGAATATCATTCAGGAAAAGACCTTGCAGAGGTCTCTGCTTTTAGAAATATATGACTTAAGTAATAAGTGTCAGACACTATCAGAGTCTGGGGCTGTGACATGCTGCAGGACAGGGAGCTGGTAGGAGCTATTATTACCTTTTATGTACATTCTCCAAAATGTTGTTAAGAAAATGTAATTACCAGTGGGGAGGCTCATTTATCTAAATTTTTCTGGGCTACCAAAGAAACCTGACATGTAAACAATTTAGATAAGGAGTCTAATAATCCAGCTATACCAAGTGTCTGCAATCTGTCGCTTGGTGCTCTCTTATTCTTCGGTGGAACAGTCTATTGTCCTTGAAGTGTTATTTCAGCGGAATGTACA-TAGGAAGACAAA-CGTGACTCAGTATCAAGATAGTGAGTTTTAATAAAGCTAAAAA------ATG-----TACAAAAC----A----GATTTTCACCTACTAATATCAAAGTAGAATTCA i rheMac3.chr5 C 0 C 0 s macFas5.chr5 20909103 710 + 189454096 TCCATGTGTTGCT---------------------------------------------------------ACTGCAGGAAGAGTGGAGATTCGT-GTGGGGAGTGGGGA----GGATAACTTCCCCAGG------------------GGGTATAGCAGTATCTTAAAAAG----GGGACGTAAAAAAAAAT-CTCC------CATTTTGGAGATTCTATTTCATATTC-CCTACTTAATAATTCCTTATTCAAAAAGTTTAGTGATTCCCATCAATGCGTATGACATCCATGGAAAGTTAGAAACATAATCAGATTTTTGACTC---TGCAGCTTGAGAGAATATCATTCAGGAAAAGACCTTGCAGAGGTCTCTGCTTTTAGAAATATATGACTTAAGTAATAAGTGTCAGACACTATCAGAGTCTGGGGCTGTGACATGCTGCAGGACAGGGAGCTGGTAGGAGCTATTATTACCTTTTATGTACATTCTCCAAAATGTTGTTAAGAAAATGTAATTACCAGTGGGGAGGCTCATTTATCTAAATTTTTCTGGGCTACCAAAGAAACCTGACATGTAAACAATTTAGATAAGGAGTCTAATAATCCAGCTATACCAAGTGTCTGCAATCTGTCGCTTGGTGCTCTCTTATTCTTCGGTGGAACAGTCTATTGTCCTTGAAGTGTTATTTCAGCGGAATGTACA-TAGGAAGACAAA-CGTGACTCAGTATCAAGATAGTGAGTTTTAATAAAGCTAAAAA------ATG-----TACAAAAC----A----GATTTTCACCTACTAATATCAAAGTAGAATTCA i macFas5.chr5 C 0 C 0 s papAnu2.chr5 16499578 709 + 178775436 TCCATGTGTTGCT---------------------------------------------------------ACTGCAGGAAGAGTGGAGATTcgt-atggggagtgggga----ggataACTTCCCCAGG------------------GGCTATAGCAGTATCTTAAAAAG----GGGAcgtaaaaaaaaat-ctcc------cattTTAGAGATTCTATTTCGTATTC-CCTACTTAATAATTCCTTATTCAAAAAGTTTAGTGATTCCCATCAATGCGTATGACATCCATGGAAAGTTAGAAACATAATCAGATTTTTGACTC---TGCAGCTTGAGAGAATATCATTCAGGAAAAGACCTTGCAGAGGTCTCTGCTTTTAGAAATATATGACTTAAGTAATAAGTGTCAGACACTATCAGAGTCTGGGGCTGTGACATGCTGCAGGACAGGGAGCTGGTAGGAGCTATTATTACCTTTTATGTACATTCTCCAAAATGTTGTTAAGAAAATGTAATTACCAGTGGGGAGGCTCATTTATCTAAATTTTTCTGGGCTACCAAAGAAACCTGACATGTAAACAATTTAGATAAGGAGTCTAATAATCCAGCTATACCAAGTGTCTGCAATCTGTCGCTTGGTGCTCTCTTATTCTTCGGTGGAACAGTCTATTGTCCTTGAAGTGTTATTTCAGCAGAATGTACA-TAGGAAGA-AAA-CGTGACTCAGTATCAAGATAGTGAGTTTTAATAAAgctaaaaa------atg-----tacaaaac----a----gATTTTCACCTACTAATATCAAAGTAGAATTCA i papAnu2.chr5 C 0 C 0 s chlSab2.chr27 19982300 708 - 48547382 TCCATGTGCTGCT---------------------------------------------------------ACTGCAGGAAGAGTGGAGATTCGT-GTGGGGAGTGGGGA----GGATAACTTCCCCAGG------------------GGGTATAGCAGTATCTTAAAAAG----AGGACATAAAAAAAA---CTCC------CATTTTAGAGATTCTATTTTGTATTC-CCTACTTAATAATTCCTTATTCAGAAAGTTTAGTGATTCCCATCAATGCGTATGACATCCATGGAAAGTTAGAAACATAATCAGATTTTTGACTC---TGCAGCTTGAGAGAATATCACTCAGGAAAAGACGTTGCAGAGGTCTCTGCTTTTAGAAACATATGACTTAAGTAATAAGTGTCAGACACTATCAGAGTCTGCGGCTGTGACACGCTGCAGGACAGGGAGCTGGCAGGAGCTGTTATTACCTTTTATGTACATTCTCCAAAACGTTGTTAAGAAAATGTAATTACCAGTGGGGAGGCTCATTTATCTAAATTTTTCTGGGCTACCAAAGAAACCTGACATGTAAACAATTTAGATAAGGAGTCTAATAATCCAGCTATACCAAGTGTCTGCAATCTGTCGCTTGGTGCTCTCTTATTCTTCGGTGGAACAGTCTGTTGTCCTTGAAGTGCTATTTCAGTGGAATGTACA-TAGGAAGACAAA-CGTGACTCAGTATCAAGATAGTGAGTTTTAATAAAGCTAAAAA------ATG-----TACAAAAC----A----GATTTTCATCTACTAATATCAAAGAAGAATTCA i chlSab2.chr27 C 0 C 0 s calJac3.chr3 21343062 714 - 190850796 TCCCCGTCTTGCT---------------------------------------------------------ACAGCAGGAAAAGTGGAGATTCTT-ATGGGGAATGGGGA----GGATAACTTTTCCAGG------------------GCATACAGCAGTATCTTAAAAAG----GGAATAGAAAAAAAATT-ATCC------CATTTTAGAGATTCTATTTGATATTT-CCTACTTAATAATTCCTTATTCAGAAAGTTTAGCCACACCCATCAATGTGTACGTCATCCATGGAAAGTTGGAAACATAATCAGATTTTCGTCTCT-TTGCAACTTGGGACAGTATCATTCAGGAAAAGACCTTGCAGAGGTCTCTGCTTTTAGAAATATATGACTTAAGTAATAAGTGTCAGACACTATCAAAATCTGGGGCTGTGACATGCTGCAGGACAGGGCGCTGGTAGGAGATTTCATTACCTTTTATGTACATTCGCCAAAATGTTGTTAAGAAAATGTAATTACCAGTGGGGAGGCTCATTTATCTAAATTATTCTGGGCTACCAAAGAAACCTGACATGTAAACAATTTAGATAAGGAGTCTAGTAATCTAGCTCTACCAAGTGTCTGCAATCTGTCACTCAGTGTACTCTTATTCTTAGGGGGAACTGTCTGTTGTCCTTGAAGTGCTATTTTGGGGGAATATACATTGGGAAGACAAA-CGTGACTCAGTATCAAGA---TGTGTTTTAATAAAGCTAAATA------ATG-----TACAAAACAGTGA----GATTTTCACCTACTAATATCGAAGTAGAATGCA i calJac3.chr3 C 0 C 0 s mm10.chr5 49317768 686 + 151834684 ATCACATGCACTT---------------------------------------------------------GTTGCAGATACAGATATTGTTTTT---------TAGACA----GGAAAA--TCCTACAG------------------GGATACAGCAGTATCCTGGAAAG----GAA-----AGGAAAACT----------------------TTGTGTTCCATATTT-ACCACTTAATAACTCCTGATCCACCAAATTCGGGATTTCTCATAAATGAGTATGACACCTATAGAAAATGGCAGGTATA---AAGTCTTTGACTCCACCCCAGCTTGAGACAGTAACAGTTGGGAAAAGACTTTGCAGAGGTCTCTGCTTTCAGTAATATATGACTTAGGCAATAAGTGTCAGACACTATCAGAATCTGAGGCTGTGACACAGAGCAGGACAGGGTGCTGGTCGAAGCTATCATTACCTTTTATGTACATTCACCAAAATGTTGTTAAGGAAATGTAATTGCCAATGAGGAGTCTCATTTGTC-AAATTACATTGGGTTGCCAAAGAAAGCTGACATGTAAACAATTTACATAACTATTTTAATCATCTAGTTACATCAATGGTCTGCAATGTATTACACAATATGCTCTAAATCTAGGAGAGGATACGTCATGGTCCTCAAAATGGTCTGTCAGCTGAATGTACTCTATAAAGACGTA-GGTAAAACAGTGTCAGGATCTTGAGTTTTAATAAAACTAAAAATATCCCACA-----TGGCAATC----A----AATTTCCACATCCTGACTTCAAAGCAGGATGCA i mm10.chr5 C 0 N 0 s canFam3.chr3 3907751 796 - 91889043 tctgtgtgtctctcatgaataaataaataaaatctttaaaaaaGAAAAAAAAGAATAACCATGGATTTCAATAGCAAGGAGCGTAGAAACTGTCAGTCAGGAGAGGCGAAAATAGACAACTCTCATGGGGTGGGGGTGGGTAGGGTAGGATTTAACAGTACCTTGAGAGGAGCAGAAAGGT-GGAAAAAGT-CCCCTCTCCACTTTGTAGAGATTTCATTTCATATTCTCCCACATGATAATTCCTGATTCAGGACATTCGGGCTTTCCCATAAATGTGTATGACATCCATGCAAAGTTGCAGATATAATCGGATTTTCGAC-----TACAGCTTGAGACAGTATCATTTGGGAAAAGACCTTGCAGAGGCCTCTGCTTTTAGAAATATATGACTTAAGTAATAAGTGTCAGACACTATCAGAATCTGGAGCCGTGACATGCTGCAGGACAGCATGCTGGTGGAAGCTATTATTACCTTTTATGTACATTCACCAAAATGTTGTTAAGGAAATGTAATTACCAATGGGGAGTCTCATTTATCCAAATTATTCTGGGCTACCAAAGAAACCTGACATGTAAACAATTTAGATAAGGATTCTAATAAGCTAGCTATACCAAGTACCTGCAATTTGTCACACAGCACACTC-----------AGGACCAGTCTGTTGTCCTTCAAGTGCTATTTCAGCTGAATGTACATTAGGAAGACAACTTTTAAGTCAGTGTCAAGACA--GGGTTTTAATTAAGGTTAAAA------AAGAAACCCACAATAC----AATGCAATTTTCATCTACTAATTTCAAAGTAGAATGCA i canFam3.chr3 I 147 C 0 a score=33366.000000 s hg38.chr4_KI270790v1_alt 220237 9 + 220246 GTGGAATTC s panTro4.chr4 21609199 9 + 193495092 GTGGAATTC i panTro4.chr4 C 0 N 0 s ponAbe2.chr4 21785642 9 + 198332218 GTGGAATTC i ponAbe2.chr4 C 0 N 0 s nomLeu3.chr20 20393928 9 - 85365473 GTGGAATTC i nomLeu3.chr20 C 0 N 0 s rheMac3.chr5 16860040 9 + 184069350 GTGGAATTC i rheMac3.chr5 C 0 N 0 s macFas5.chr5 20909813 9 + 189454096 GTGGAATTC i macFas5.chr5 C 0 N 0 s papAnu2.chr5 16500287 9 + 178775436 GTGGAATTC i papAnu2.chr5 C 0 N 0 s chlSab2.chr27 19983008 9 - 48547382 GTGGAATTC i chlSab2.chr27 C 0 N 0 s calJac3.chr3 21343776 9 - 190850796 GTGGGATTC i calJac3.chr3 C 0 N 0 s canFam3.chr3 3908547 9 - 91889043 GTGACACTC i canFam3.chr3 C 0 N 0