##maf version=1 scoring=roast.v3.3 a score=181773.000000 s hg38.chr9_GL383542v1_alt 0 59 + 60032 TTACTGCAGCCTGTGAAGGCCAGAGCAAGAGGCGTGGCCGTGGAAAGTGCAGGAAGTAT s panTro4.chr9 86943393 59 + 137840987 TTACTGCAGCCTGTGAAGGCCAGAGCAAGAGGCGTGGCCATGGAAAGTGCAGGAAGTAT i panTro4.chr9 N 0 C 0 s ponAbe2.chr9 83569784 59 + 135191526 TTACTGCAGCCTGTGAAGGCCAGAGCAAGAGGCGTGGCCGTGGAAAGTGCAGGAAGTAT i ponAbe2.chr9 N 0 C 0 s nomLeu3.chr1a 76092857 59 - 122973662 TTACTGCAGCCTCTGAAGGCCAGAGCAAGAGGCGTGGCTGTGGAAGGTGCAGGAAGTAT i nomLeu3.chr1a N 0 I 3 s rheMac3.chr15 97531695 59 + 112192347 TTACTGCAGCCTGTGAAGGCCAGAGCAAGAGTCGTGTCCGTGGAAGGTGCAGGAAGTAT i rheMac3.chr15 N 0 C 0 s macFas5.chr15 98751552 59 + 112612857 TTACTGCAGCCTGTGAAGGCCAGAGCAAGAGTCGTGTCCGTGGAAGGTGCAGGAAGTAT i macFas5.chr15 N 0 C 0 s papAnu2.chr15 94465156 59 + 107442819 tTACTGCAGCCTGTGAAGGCCAAAGCAAGAGTCGTGTCCGTGGAAGGTGCAGGAAGTAT i papAnu2.chr15 N 0 C 0 s chlSab2.chr12 98677418 59 + 108555830 TTACTGCAGCCTGTGAAGGCCAGAGCAAGAGGCGTGGCCATGGAAGGTGCAGGAAGTAT i chlSab2.chr12 N 0 C 0 s calJac3.chr1 77070463 59 + 210400635 TTATTGTAGCCTGTGAAGGCCAGAGTAAGAGGCACGACTGTGGAAGGTGCAGGAAGTAT i calJac3.chr1 N 0 C 0 a score=6825.000000 s hg38.chr9_GL383542v1_alt 59 3 + 60032 GGC s panTro4.chr9 86943452 3 + 137840987 GGC i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83569843 3 + 135191526 GGC i ponAbe2.chr9 C 0 C 0 s rheMac3.chr15 97531754 3 + 112192347 GGC i rheMac3.chr15 C 0 C 0 s macFas5.chr15 98751611 3 + 112612857 GGC i macFas5.chr15 C 0 C 0 s papAnu2.chr15 94465215 3 + 107442819 GGC i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 98677477 3 + 108555830 GGC i chlSab2.chr12 C 0 C 0 s calJac3.chr1 77070522 3 + 210400635 CGC i calJac3.chr1 C 0 C 0 e nomLeu3.chr1a 76092916 3 - 122973662 I a score=87152.000000 s hg38.chr9_GL383542v1_alt 62 29 + 60032 TATGGAGAGTGCTGGGGTGTGGCTGTGGT s panTro4.chr9 86943455 29 + 137840987 TATGGAGAgtgctggggtgtggctgcggt i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83569846 29 + 135191526 TATGGAGAgtgctggggtgtggctgtggt i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76092919 29 - 122973662 TATGGAGAGTGCTGGGGTGTGGCTGTGGT i nomLeu3.chr1a I 3 C 0 s rheMac3.chr15 97531757 29 + 112192347 TATGAAGAGTGCTGTGGTGTGGCTGTGGT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 98751614 29 + 112612857 TATGAAGAGTGCTGTGGTGTGGCTGTGGC i macFas5.chr15 C 0 I 258 s papAnu2.chr15 94465218 29 + 107442819 TATGAAGAgtgctgtggtgtggctgtggt i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 98677480 29 + 108555830 TACGGAGAGTGCTGGGGTGTGGCTGTGGT i chlSab2.chr12 C 0 C 0 s calJac3.chr1 77070525 28 + 210400635 TATGGAG-GTGCTGGGGTGTGGCTGTGGT i calJac3.chr1 C 0 C 0 a score=47332.000000 s hg38.chr9_GL383542v1_alt 91 14 + 60032 GGGTGCAGGAAGCG s panTro4.chr9 86943484 14 + 137840987 gggtgcaggaggcg i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83569875 14 + 135191526 gggtgcaggaggcg i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76092948 14 - 122973662 GGGTGCAGGAGGCG i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 97531786 14 + 112192347 GGGTGCAGGAGGCG i rheMac3.chr15 C 0 C 0 s macFas5.chr15 98751901 14 + 112612857 GGGTGCAGGAGGCG i macFas5.chr15 I 258 C 0 s papAnu2.chr15 94465247 14 + 107442819 gggtgcaggaggcg i papAnu2.chr15 C 0 I 390 s chlSab2.chr12 98677509 14 + 108555830 GGGTGCAGGAGGCG i chlSab2.chr12 C 0 C 0 s calJac3.chr1 77070553 14 + 210400635 GGGTGCAGGAGGTG i calJac3.chr1 C 0 C 0 a score=8689.000000 s hg38.chr9_GL383542v1_alt 105 6 + 60032 TGGCTG s panTro4.chr9 86943498 6 + 137840987 tggctg i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83569889 6 + 135191526 tggctg i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76092962 3 - 122973662 TGG--- i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 97531800 6 + 112192347 TGGCTG i rheMac3.chr15 C 0 I 128 s macFas5.chr15 98751915 6 + 112612857 TGGCTG i macFas5.chr15 C 0 C 0 s papAnu2.chr15 94465651 6 + 107442819 tggctg i papAnu2.chr15 I 390 C 0 s chlSab2.chr12 98677523 4 + 108555830 TGGC-- i chlSab2.chr12 C 0 C 0 s calJac3.chr1 77070567 6 + 210400635 TGGCCA i calJac3.chr1 C 0 C 0 a score=3384.000000 s hg38.chr9_GL383542v1_alt 111 27 + 60032 TGGAGCGGGTGTGGTTATGGACGGA--GT s panTro4.chr9 86943504 27 + 137840987 tggagtgggtgtggttgtggacgga--gt i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83569895 15 + 135191526 tggagcgggtgtggt-------------- i ponAbe2.chr9 C 0 C 0 s macFas5.chr15 98751921 25 + 112612857 TGGAGCGGGTGCCGTTGTGGGGGGT---- i macFas5.chr15 C 0 C 0 s papAnu2.chr15 94465657 25 + 107442819 tggagggggtgcagttgtggggggt---- i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 98677527 16 + 108555830 -----------TGGCTGTGGAGGGAGT-- i chlSab2.chr12 C 0 C 0 s calJac3.chr1 77070573 10 + 210400635 TGGAAGGTGT------------------- i calJac3.chr1 C 0 C 0 e rheMac3.chr15 97531806 128 + 112192347 I e nomLeu3.chr1a 76092965 0 - 122973662 C a score=66558.000000 s hg38.chr9_GL383542v1_alt 138 36 + 60032 GTGGCTGTGGAGGGGGTGTGACTGTGGAGGGTGCTG s panTro4.chr9 86943531 36 + 137840987 gtggctgtggagggggtgtgactgtggagggtgctg i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83569910 31 + 135191526 -----tgtggagggggtgtggctgtggagggtgctg i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76092965 15 - 122973662 ---------------------CTGTGGAGGGTACTG i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 97531934 36 + 112192347 GTGGTTGTGGAGGGGATGTGGCTGTGGAGGGTGCTG i rheMac3.chr15 I 128 I 420 s macFas5.chr15 98751946 36 + 112612857 GTGGCTGTGGAGGGGGTGTGGCTGTGGAGGGTGCTG i macFas5.chr15 C 0 C 0 s papAnu2.chr15 94465682 36 + 107442819 gtggctgtgaagggggtgtggctgtggagggtgccg i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 98677543 30 + 108555830 GTGGTTGTGG-GGGTGTGTGGCTGTGGAGGG----- i chlSab2.chr12 C 0 C 0 s calJac3.chr1 77070583 26 + 210400635 ----------TAGAGGTGTGGCTGTGGTGGGTGCTG i calJac3.chr1 C 0 C 0 a score=4019.000000 s hg38.chr9_GL383542v1_alt 174 2 + 60032 AG s panTro4.chr9 86943567 2 + 137840987 ag i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83569941 2 + 135191526 gg i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76092980 2 - 122973662 GG i nomLeu3.chr1a C 0 C 0 s macFas5.chr15 98751982 2 + 112612857 GG i macFas5.chr15 C 0 C 0 s papAnu2.chr15 94465718 2 + 107442819 gg i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 98677573 2 + 108555830 GG i chlSab2.chr12 C 0 C 0 s calJac3.chr1 77070609 2 + 210400635 GG i calJac3.chr1 C 0 C 0 e rheMac3.chr15 97531970 420 + 112192347 I a score=163868.000000 s hg38.chr9_GL383542v1_alt 176 58 + 60032 TGTGGCTGTGGTGGGTGCTGGGGGTGTGGCTGTGGTAGGGGAGGTGTGGCTATTGGAT s panTro4.chr9 86943569 58 + 137840987 tgtggctgtggtgggtgctgggggtgtggctgtggtaggggaggtgtggCTATTGGAT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83569943 58 + 135191526 tgtggctgtggtggatgctgggggtgtggctgtggtaggggaggtgtggCTATTGGAT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76092982 58 - 122973662 TGTGGCTGTGGTGGATGCTGGGGGTGTGGCTGTGGTAGGGGAGGTGTGGCTATTGGAT i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 97532390 58 + 112192347 TGTGGCTGTGGAGGGTGCTGGGGGTGTGGCTGTGGTAGGGGAGGTGTGGCTATTGGAC i rheMac3.chr15 I 420 C 0 s macFas5.chr15 98751984 58 + 112612857 TGTGGCTGTGGTGGGTGCTGGGGGTGTGGCTGTGGTAGGGGAGGTGTGGCTATTGGAT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 94465720 58 + 107442819 tgtggctgtggtgggtgctgggggtgtggctgtggtaggggaggtgtggctATTGGAT i papAnu2.chr15 C 0 I 134 s chlSab2.chr12 98677575 58 + 108555830 TGTGGCTGTGGAGGGTGCTGGGGGTGTGGCTGTGGTAGGGGAGGTGAGGTTATTGGAT i chlSab2.chr12 C 0 C 0 s calJac3.chr1 77070611 38 + 210400635 TGTGGCTGTGGTGGGTGC---------AGCTGTGGT-----------GGCTGTTGGAC i calJac3.chr1 C 0 C 0 a score=13752.000000 s hg38.chr9_GL383542v1_alt 234 4 + 60032 AGTC s panTro4.chr9 86943627 4 + 137840987 AGTC i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83570001 4 + 135191526 AGTC i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76093040 4 - 122973662 AGTC i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 97532448 4 + 112192347 AGTC i rheMac3.chr15 C 0 C 0 s macFas5.chr15 98752042 4 + 112612857 AGTC i macFas5.chr15 C 0 C 0 s papAnu2.chr15 94465912 4 + 107442819 AGTC i papAnu2.chr15 I 134 C 0 s chlSab2.chr12 98677633 4 + 108555830 AGTC i chlSab2.chr12 C 0 I 150 s calJac3.chr1 77070649 4 + 210400635 AGTC i calJac3.chr1 C 0 C 0 a score=23312.000000 s hg38.chr9_GL383542v1_alt 238 8 + 60032 ACAGCTGT s panTro4.chr9 86943631 8 + 137840987 ACAGCTGT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83570005 8 + 135191526 ATAGCTGT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76093044 8 - 122973662 ATAGCTGT i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 97532452 8 + 112192347 ATAGCTGC i rheMac3.chr15 C 0 C 0 s macFas5.chr15 98752046 8 + 112612857 ATAGCTGT i macFas5.chr15 C 0 I 314 s papAnu2.chr15 94465916 8 + 107442819 ATAGCTGC i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 98677787 8 + 108555830 ACAGCTGT i chlSab2.chr12 I 150 C 0 s calJac3.chr1 77070653 8 + 210400635 ATAGCTGT i calJac3.chr1 C 0 C 0 a score=1063748.000000 s hg38.chr9_GL383542v1_alt 246 385 + 60032 GGTGGGTGCAGGGGGCAAGGCTGTGGTGTAGGAAGTGTAGTGTGGCTATTGAATGGGGTGTATAGCAGTGGTGAATACAGGAGGCA----------------------------------------------------------------------------------------TGGCCTTGGTGGGTACAGGAGGCATGGCTATAACACAGGAGGCATGGCCTTGGTGGGTGCAG-----------------------------------------------------------------------------------GAAGCATAGCTGTGATGCAAGAAGCATGGCCTTGGTGAGTGCTGGAGtatgttctctaaagacactgtgaacactattagcccatactgaaccactgctcctggagaaatacagggttagcttccacgcctctgatcactacatttttgtcatccaaccaatacatatttttgttttatgtgtttttatctacagacaccttgtttaatatacgtttcttaccaatagttaactgta s panTro4.chr9 86943639 385 + 137840987 GGTGGGTGCAGGGGGCAAGGCTGTGGTGTAGGAAGTGTAGTGTGGCTATTGAATGGGGTGTATAGCAGTGGTGAATACAGGAGGCA----------------------------------------------------------------------------------------TGGCCTTGGTGGGTACAGGAGGCATGGCTATAACACAGGAGGCATGGCCTTGGTGGGTGCAG-----------------------------------------------------------------------------------GAAGCATAGCTGTGATGCAAGAAGCATGGCCTTGGTGAGTGCTGGAGtatgttctctaaagacactgtgaacactattagcccatactgaaccactgctcctggagaaatacagggttagcttccacacctctgatcactacatttttgtcatccaaccaatacatatttttgttttatgtgtttttatctacagacaccttgtttaatatatgtttcttaccaatagttaactgta i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83570013 428 + 135191526 GGTGGGTGCAGGGGGCAAGGCTGTGGTGTAGGAAGTGTAGTGTGGCTATTGAATGGGA-GCATAGCAGTGGTGAATACAGGAGGCATGGCCTTGGTGGGTAC--------------------------------------------AGGAGGGGAGGCTATGACACAGGAGGTGTGGCCTTGGTGGGTACAGGAGGCATGGCTATAACACAGGAGGCATGGCCTTGGTGGGTGCAG-----------------------------------------------------------------------------------GAAGCATAGCTGTGATGCAAGAAGCATGGCCTTGGTGAGTGCTGGAGtatgttctctaaagacactgtgaacactattagccaatactgaaccactgctcctggagaaatacagggttagcttccacgcctctggtcactacatttttgtcatccaaccaatacatatttttgttttatgtgtttttatctacagacaccttgtttaatatatgttTCTTACCAATAGCTAACTATA i ponAbe2.chr9 C 0 I 3332 s nomLeu3.chr1a 76093052 383 - 122973662 GGTGGGTGCAGGGGGCAAGGCTGTGGTGTA-GAAGTGTAGTGTGGCTATTGAATGGGA-GCATAGCAGTGGTGAATACAGGAGGCA----------------------------------------------------------------------------------------TGGCCTTGGTGGGTACAGGAGGGGAGGCTATAACACAGGAGGCGTGGCCTTGGTGGGTGCAG-----------------------------------------------------------------------------------GAAGCATAGCTGTGATGCAAGAAGCATGGCCTTGGTGAGTGCTGGAGtatgttctctaaagacactgtgaacactattagctgatactgaacaactgctcctggagaaatacagggttagcttccacgcctctggtcactacatttttgtcatccaaccaatacatacttttgttttatgtgtttttatctacagacaccttgtttaatatatgtttcttaccaatagctaactata i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 97532460 428 + 112192347 GGTGGGTGCAGGGGGCAAGGCTGTGGTGTAGGAAGTGTAGTGTGGCTATTGAATGGGG-GCATAGCAGTGATGAATACAGGAGACAC--------------------------------------------GGCCTTGGTGGGTAGAGGAGGGTGGGCCATGACACAGGAGGCGTGGCCTTGGTGGGTACAGGAGGCATGGCTATAACACAGGAGGCAAGGCCTTGGTGGATGCAG-----------------------------------------------------------------------------------GAAGCTTAGCTGTGATGCAAGAAGCATGGCCTTGGTGAGTGCTGGAGtatgttctctaaagacactgtgaacactgctagcccatactgaaccatcgctcctggagaaatacacggttagcttccatgcctctggtcactacatttttgtcatccaaccaatacatatttttgttttatgtgtttttatctacacacaccttgtttaatatatatttcttaccaatagctaactata i rheMac3.chr15 C 0 C 0 s macFas5.chr15 98752368 428 + 112612857 GGTGGGTGCAGGGGGCAAGGCTGTGGTGTAGGAAGTGTAGTGTGGCTATTGAATGGGG-GCATAGCAGTGATGAATACAGGAGACAC--------------------------------------------GGCCTTGGTGGGTAGAGGAGGGTGGGCCATGACACAGGAGGCGTGGCCTTGGTGGGTACAGGAGGCATGGCTATAACACAGGAGGCAAGGCCTTGGTGGATGCAG-----------------------------------------------------------------------------------GAAGCTTAGCTGTGATGCAAGAAGCATGGCCTTGGTGAGTGCTGGAGtatgttctctaaagacactgtgaacactgctagtccatactgaaccatcgctcctggagaaatacacggttagcttccatgcctctggtcactacatttttgtcatccaaccaatacatatttttgttttatgtgtttttatctacacacaccttgtttaatatatatttcttaccaatagctaactata i macFas5.chr15 I 314 C 0 s papAnu2.chr15 94465924 428 + 107442819 GGTGGGTGCAGGGGGCAAGGCTGTGGTGTAGGAAGTGTAGTGTGGCTATTGAATGGGG-GCATAGCAGTGATGAATACAGGAGACAC--------------------------------------------GGCCTTGTTGGGTACAGGAGGGTGGGCCATGACACAGGAGGCGTGGCCTTGGTaggtacaggaggcatggctatAACACAGGAGGCAAGGCCTTGGTGGATGCAG-----------------------------------------------------------------------------------GAAGCTTAGCTGTGATGCAAGAAGCATGGCCTTGGTGAGTGCTGGAGTATGTTCTCTAAAGACACTGTGAACACTGCTAGCCCATACTGAACCATCGCTCCTGGAGAAATGCACGGTTAGCTTCCATGCCTCTGGTCACTACATTTTTGTCATCCAAccaatacatatttttgttttatgtgtttttatctACACACACcttgtttaatatatatttcttaccaATAGCTAACTATA i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 98677795 467 + 108555830 GGTGGGTGCAGGGGGCAAGGCTGTGGTGTAGGAAGTGTATTGTGGCTATTGAATGGGG-TCATAGCAGTGATGAATACAGGAGGCGCGGCCTTGGTGGGTACAGGAGGGTGGGCCATGACACAGGAGGCGTGGCCTTGGTGGGTACAGGAGGCATGGCTATAATACAGGAGGCGTGGCCTTGGTGGGTACAGGAGGCATGGCTATAACACAGGAGGCAAGGCCTTGGTGGATGCAG-----------------------------------------------------------------------------------GAAGCTTAGCTGTGATGCAAGAAGCATGGCCTTGGTGAGTGCTGGAGtatgctctctaaagacactgtgagcactgctagcccatactgaaccatcactcctggagaaatacacggttagcttccatgcctctggtcactacatttttgtcatccaaccaatacatat-----ttttatgtgtttttatctacacacaccttgtttaatatatatttcttaccaatagctaactaca i chlSab2.chr12 C 0 C 0 s calJac3.chr1 77070661 406 + 210400635 GGTGGCTCTAGGAGACAAGGCTGTGGTGTAGGAAGTGTAGTATGGCTACTGAATGGGG-GTGTAGAACTGGTGAGTACAGGAGGCA----------------------------------------------------------------------------------------TGGCCTTGCTGGGTACAGGAGGCCAGGCTATGACACACGAGGTGTGGCCTTAGTGGGTACAGGAGGCCAGGCTATGACACAGGAGGCGTGGCCCAGTGGGTGAAGGAGGCGTGGCTATAACACGGAGGCATGGCCTTGGTGGGTTGAGGCATAGCTGTGATACAAGAAGCATGGCCTTGGTGAGTG-----------------------------------------------------------CTggagaaatacagggttaggttccacgcctctggtcactacatttttgtcatccaagca--acatatttttgttgtatgtgtttttgtctacagtcacatttttaaatatatTTTTCTTACCAATAGCtaattata i calJac3.chr1 C 0 C 0 a score=359664.000000 s hg38.chr9_GL383542v1_alt 631 122 + 60032 tgtattat--------tctttataataAAACTCAagctgggaagagttttgcgttttcctgaccttgggtaatgtgactaaaaatttatttggctgtcagcctcacaacaatgctgtccactaaactttt s panTro4.chr9 86944024 122 + 137840987 tgtattat--------tctttataataAAACTCAagctgggaagagttttgcgttttcctgaccttgggtaatgtgactaaaaatttatttggctgtcagcctcacaacaatgctgtccactaaactttt i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83573773 122 + 135191526 TGTATTAT--------TCTTTATAATAAAACACAAGCTGGGAAGAGTTTTGCATTTTCCTAACCTTGGGTAATGTGACTAAAAATTTATTTGGCTGTCAGCCTCACAACAACGCTGTCCACTAAACtttt i ponAbe2.chr9 I 3332 C 0 s nomLeu3.chr1a 76093435 122 - 122973662 tgtattat--------tctttataataAaacacaagctgggaagagttttgcattttcttgaccttgggtaatgtgactaaaaatgtatttggctgtcaacctcacaacaatgctgtccactaaactttt i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 97532888 122 + 112192347 tgtattat--------tctttataataAaacacaagctgggaagagttttgcattttcctgaccttgggtaatgtgactacaaatttctttggctgtcagcctcacaacaatgctgtctactaacctttt i rheMac3.chr15 C 0 C 0 s macFas5.chr15 98752796 119 + 112612857 tgtattat--------tctttataataAaacacaaactgggaagagttttgcattttcctgaccttgggtaatgtgactacaaatttctttggctgtcagcctcacaacaatgctgtctactaac---tt i macFas5.chr15 C 0 C 0 s papAnu2.chr15 94466352 122 + 107442819 Tgtattat--------tctttataataaaacacAAGCTGGGAAGagttttgcattttcctgacCTTGGGTAATGTGACTACAAATTTCTTTGGCTGTCAGCCTCACAACAATGCTGTctactaacctttt i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 98678262 122 + 108555830 tgtattat--------tctttataataAaacacaagctgggaagagttttgcattttcctgaccatgggtaatgtgactacaaatttctttggctgtcagcctcacaacaatgctgtctactaaactttt i chlSab2.chr12 C 0 C 0 s calJac3.chr1 77071067 126 + 210400635 tgtattatttttaaaatttttataataaaaCAGAAGGTGGGAAGAGTTTTGCATTTTCCTGACCTTGCGTAATGTGACTAAAAATTTCTT----TGTCAGCCTCACAACAGTGCTGTCCACTAAACTTTT i calJac3.chr1 C 0 I 843 a score=1419709.000000 s hg38.chr9_GL383542v1_alt 753 610 + 60032 tttttttt---------agatggagtctcgctctgtcgctcaggctggggtgcagtggtgcaatcttggctcactgcaacctccacctcccgggttcaagagattctcctgcctcagcctcttgagtagctgggatta----cgcgcaccaacacgcccggctaatttttgtatttttagtagagatgaggtttcaccatgttggtcaggctggtcgcgaactcctgacgtcgtgatccgcctgcctcagcctcccaaagtgctgggattacaggcgagccaccgcgcctggccagtccaccaaacttttaatgtcatctcatgaatccacaaatttcac--tggttttttttcttcttcttg----------------------ttttt-ccataactttaccaggtactatagatgttacttgggcacttttcagagtggcctcacatctgcgtcaatgactttcctcttcctccttctggatgtaacatattgttgactcattgctgttgaacttactgtcaacagcactgtaactcatgcctgagccaagcttgtctaacaggtatattttctctgtaaagcacatcacagcctttctgcacttaggaacattagacagcacttcagcagtacacttgggggcc s panTro4.chr9 86944146 609 + 137840987 ttttttt----------agatggagtctcgctctgtcgctcaggctggggtgcagtggtgcaatcttggctcactgcaacctccacctcccgggttcaagagattctcctgcctcagcctcttgagtagctgggatta----cgcgcaccgccaagcctggctaatttttgtatttttagtagagatgaggtttcaccatgttggtcaggctggttgcgaactcctgacgtcgtgatccgcctgcctcggcctcccaaagtgctgggattacaggcaagccaccgcgcctggccagtccaccaaacttttaatgtcatctcatgaatccacaaatttcac--tggttttttttcttcttgttg----------------------ttttt-ccataactttaccaggtactatagatgttacttgggcacttttcagagtggcctcacatctgcgtcaataactttcctcttcctccttctggatgtaacatattgttgactcattgctgttgaacttactgtcaacagcaccgtaactcatgtctgagccaagcttgtctaacacgtatattttctctgtaaagcacatcacagcctttctgcacttaggaacactagacagcacttcagcagtacacttgggggcc i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83573895 611 + 135191526 tttttttt-------g-agacggagtctcgctctgtcgctcagtctggggtgcagtggtgcaatcttggctcactgcaacctccacctcccgggttcaagaggttctcctgcctcagcctcttgagtagctgggattacaggcgcgcaccaccatacccggctaatttttgtatttttagtagagatgaggtttcaccatgttggtcaggctggtcgcgaactcctgacgtcgtgatccgcctgcctcggcctcccaaagtgctgggattacaggcgagccaccgcgcccggccAGTCCACCAAACTTTTAATGTCATCTCACGAATCCACAAATTTCAC------TTTTTTTATTCTTCTTC----------------------TTATT-CCATAACTTTACCAGGTGCTATAGATGTTACTTGGGCACTTTTCAGAGTGGCCTCGCATCTGCGTCAATGACTTTCCTCTTCCTCCTTCTGGATGTAacatattgttgactcattgctgttgaacttactgtcaacagcactataactcatgcctgagccaagcttgtctaacacgtatattttctctgtaaagcacatcacagcctttctgcacttaggaacactagacagcacttcagtagtacacttgggggcc i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76093557 613 - 122973662 tttttta----------agatggagtctcgctctgtcgctcagactggggtgcagtggtgcaatcttggctcactgcaacctctaccttccgggttcaagagattatcctgcctcagcctcttgagttgctgggattacaggtgcgcaccaccacacccggctaatttttgtatttttagtagagatgaggtttcaccatgttagtcaggctggtcacgaactcctgacgttgtgatccgcctgcctcagcctcccgaagtgctgggattacaggcgagccaccgcgcctggccagtccaccaaacttttaatgtcatctcatgaatccacaaatttcac--tgtttttttttattcttcttc----------------------ttttt-ccataactttaccaggtactatagatgttacttgggcacttttcagagtggcctcacatctgcgtcagtgactttcctcttcctccttctggatgtaacacattgttgatgcactgctgttgaacttactgtcaacagcactgtaactcatgcctgagccaagcttgtctaacacgtatattttatatgaaaagcacatgccaccctattagcaatttagaacattagacatcacttaaacagtacacttgggggcc i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 97533010 643 + 112192347 tttttttttttttttg-agatggagtctcactctgtgtctcaggctgcggtgcagttgtgcaatcttgactcactgcaacctccacctcccgggttcaagagatcctcctgcctcagcctcctgagtagctgggattacaagcatgcaccaccacgcccagctaatttttgtatttttagtagagacaaggtttcaccatgttgatcaggctggtctcaaactcctgacctcgtgatctgcctgcctcggcctcccaaagtgctgggattacaggcaaaccactgcacccagccagtccactaaatttttaatgtcatctcatgaatccacaaatttcaccttcttctttcttcttcttcttcttctccttctc---cttcttctttttt-ccataactttaccaggtactataggtgttacttgggcacttttcagagtggtctcacatctgcgtcaatgactttcctcttcctccttctggatgtaaagtattgttgactcaatgctgttgaacttactgtcaacagcactataactcatgcctgagccaagcttgtctaacacgtatattttctctgtaaagcacatcacagcctttctgcacttaggaacactagacaccacttcagcagtacacttgggggcc i rheMac3.chr15 C 0 I 305 s macFas5.chr15 98752915 646 + 112612857 tttttttttttttttg-agatggagtctcactctgtgtctcaggctgcggtgcagtggtgcaatcttgactcactgcaacctccacctcccgggttcaagagatcctcctgcctcagcctcctgagtagctgggattacaagcatgcaccaccacgcccagctaatttttgtatttttagtagagacaaggtttcaccatgttgatcaggctggtctcgaactcctgacctcgtgatctgcctgcctcggcctcccaaagtgctgggattacaggcaaaccactgtacccagccagtcgactaaatttttaatgtcatctcatgaatccacaaatttcaccttcttctttcttcttcttcttcttctccttctccttcttcttctttttt-ccataactttaccaggtactataggtgttacttgggcacttttcagagtggtctcacatctgcgtcaatgactttcctcttcctccttctggatgtaaagtattgttgactcaatgctgttgaacttactgtcaacagcactataactcatgcctgagccaagcttgtctaacacgtatattttctctgtaaagcacatcacagcctttctgcacttaggaacactagacaccacttcagcagtacacttgggggcc i macFas5.chr15 C 0 I 305 s papAnu2.chr15 94466474 646 + 107442819 tttttttttttttttgtagatggagtctcactctgtctctcaggctgcggtgcagtggtgcaatcttgactcactacaacctccacctcccgggttcaagagatcctcctgcctcagcctcctgagtagctgggattacaagcatgcaccaccacacccagctaatttttgtatttttagtagagacaaggtttcaccatgttgatcaggctggtctcaaactcctgacctcgtgatctgcctgcctcggcctcccaaagtgctgggattacaggcaaaccactgtgcccagccagtccACTAA--TTTTAATGTCATCTCATGAATCCACAAATTtcaccttcttctttcttcttcttcttcttctccttctccttcttcttcttttttcccatAACTTTACCAGGTACTATAGGTGTTACTTGGGCACTTTTCAGAGTGGTCTCACATCTGCGTCAATgactttcctcttcctccttctggaTGTAAAGTATTGTTGACTCAATGCTGTTGAACTTACTGTcaacagcactataactcatgcctgGGCCAAGCTTGTCTAACACGTCTATTTTCTCTGTAAAGCACATCACAGCCTTTCTGCACTTAGGAACACTAGACACCACTTCAGCAGTACACTTGGGggcc i papAnu2.chr15 C 0 I 305 s chlSab2.chr12 98678384 637 + 108555830 tttttttttttttttg-agatggagtctcactctgtctctcaggctgcggtgcagtggtgcaatcttgactcactgcaacctccacctcctgggttcaagagatcctcctgcctcagcctcctgagtagctgggattacaagcgcgcaccaccacgcc---ctaatttttgtatttttagtagagacaaggtttcaccatgttggtcaggctggtctcaaactcctgacctcgtgatctgcctgcctcggcctcccaaagtgctgggattacaggcgaaccaccgtgcccggccagtccactaaatttttaatgtcatctcatgaatccacaaatttcaccttcttctttcttcttcttcttctccttctcctc------cttctttttt-ccataactttaccaggtactataggtgttacttgggcacttttcagagtggtctcacatctgcgtcaatgactttcctcttcctccttctggatgtaaagtattgttgactcaatgctgttgaacttgctgtcaacagcactataactcatgcctgagccaagcttgtctaacacgtatattttctctgtaaagcacatcacagcctttctgcacttaggaacactagacaccacttcagcagtacacttgggggcc i chlSab2.chr12 C 0 I 312 e calJac3.chr1 77071193 843 + 210400635 I a score=1025717.000000 s hg38.chr9_GL383542v1_alt 1363 490 + 60032 attttaaacaattaaatcactgataGGCTCCGCTCCGCTCAGGGCGGCCCCAGACACGGGTTTCCCATGGCAGCA-CCACGGCACGCCCGGCGCACCTGCTGCCCCGAACCCCTGGCTCCAGGGGGCAATGAGGGGGCAGTGGAAGGGGCACTACTCCTCGGGCATTGCCTAGAGAAGCGAGACC----GTCCCGCCCTCCCGCTGGCCC--TCCTTCTCTCCCGCCCGGGGCCCGCGCAATTCTCCGCCAGAGGGACAGTCGGCCTCATATGTTAAGACCTCTGATCACTAGATCCCCTGCATCTCCACTGAACAACCAAGGCACCCCTACTCCGGCACAACTCACAAAATCCAATGCGCATGTCCACACTGATGTGGGCAGCCACATGTACACCAGCAGCCTGGCCACCCTCACCAAATACCCTGTATCCAGAATCAGAAGACTTTGTGATGGTACAGAGCCCATAGTTTTGGACAGTCTCAAACAGCACTATTT s panTro4.chr9 86944755 490 + 137840987 attttaaacaattaaatcactgataGGCTCCGCTCCACTCAGGGCGGCCCCAGACACGGGTTTCCCATGGCAGCA-CCACGGCACGCCCGGCGCACCTGCTGCCCCGAACCCCTGGCTCCAGGGGGCAATGAGGGGGCAGTGGAAGGGGCACTACTCCTCGGGCATTGCCTAGAGAAGCGAGACC----GTCCCTCCCTCCCGCTGGCCC--TCCTTCTCTCCCGCCCGGGGCCCGCGCAATTCTCCGCCAGAGGGACAGTCAGCCTCATATGTTAAGACCTCTGATCACTAGATCCCCTGCATCTCCACTGAACAACCAAGGCACCCCTACTCCGGCACAACTCACAAAATCCAATGCGCATGTCCACACTGATGTGGGCAGCCACATGTACACCAGCAGCCTGGCCACCCTCACCAAATACCCTGTATCCAGAATCAGAAGACTTTGTGATGGTACAGAGCCCATAGTTTTGGACAGTCTCAAACAGCACTATTT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83574506 488 + 135191526 attttaaacaattaaatctctgacaGCCTCCGCTCCGCTCCGGGCGGCCCCAGACACGGGTTTCCCACGGCAGCA-CCACGGCACGCCCGGCGCAGCAGCTGCCCCGATCCCCC-GCTCCAGGGGGCAATGAGGGGGCAGTGGAAGGGGCACTACTCCTCGGGCATTACTTAGAGAAGCGAGACC----GTTCCGCCCTCCCGCCGGCCC--TCCTTCTCTCCCGCCC-GGGCCCGCGCAATTCTCCGCCAGAGGGACAGTCGGCCTAATACGTTAAGACCTCTGATCACTAGATCCCCTGCATCTCCACTGAACAACCAAGGGACCCCTACTCCGGCACAACTCACAAAATCCAATGCGCCTGTCCACATCGATGTGGGTGGCCACATGTATACCAGCAGCCTGGCCACCCTCACCAAATGTCCTGTATCCAGAATCAGAACACTTTGTGATGGTACAGAGCCCATAGTTTTGGACAGTCTCACACAGCACTATTT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76094170 414 - 122973662 attttaaacaattaaatcactgacaGGCTCCGCTCCGCTCAGGGAGGCCCCAGACACGGGTTTCCCACGGCGGCA-CCACGGCACGCCCGGCGCAGCTGCTGCCCCGACCCCCCGGCTCCAGGGGGCAATGAGGGGGCAGTGGAAGGGGCACTACTCCTCGGGCATTACTTAGAGAAGAGAGACC----GTCTCGCCCTCCCGCCGGCCC--TCCTTCTCCCCCGCTC-GGGCCCGCACAATTCTCTGCCAGAGGGACAGTCGGCCGAATATGTTATGACCTCTGATCACTAGATCCCCTGCATCTCCACTGAACAACCAAGGCACCCCTACTCCGGCACAACTCACAAAATCCAGTGCGGCTGTCCACATTGATGTGGG-------------------------------------------CCAGTGTCCA--------------------------------ATAGTTTTGGACAGTCTCAAACAGCACTATTT i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 97533958 489 + 112192347 atattaaacaattaaatcactgacaGGCTCCACCCC-----GGGCGGCCCCAGACATGGGTTTCCCGCGGCAACACCCGCGGCACGCCTGGCGCAGGCGCTGCCCCGATCCCCCGGCTCCAGGGGGCAATGAGGGGGCAGTGGAAGGGGCACTACTCCTCGGGCATTACTTAGAGAAGCCAGACCGGGAGTCCCGGCCTCCCGCCGGCCG--TCTCTCTCTCCCGCCC-GGGCCCGCGCGGTTATCCGCCAGAGGGACAGTTGGCCCAATATGTCAAGACCTCTGATCACTAGATCCCCTGCATCTCCGCTGAACAACCAAGGCATCCCTACACCGGCACAACTCACAAAATCCAGTGCACCTGTCCACATTGATGTGGGCGGCCACATGTACACCAGCAGCCTGGCCACCCTCACCAAATACCCTGTAATCTGAATCGGAAGACTTTTTGATGGTACAGAGCCCATTGTTTTGGACAGTCTCAAACAGCACTGTTT i rheMac3.chr15 I 305 I 3 s macFas5.chr15 98753866 489 + 112612857 atattaaacaattaaatcactgacaGGCTCCACCCC-----GGGCGGCCCCAGACATGGGTTTCCCGCGGCAACACCCGCGGCACGCCTGGCGCAGGCGCTGCCCCGATCCCCCGGCTCCAGGGGGCAATGAGGGGGCAGTGGAAGGGGCACTACTCCTCGGGCATTACTTAGAGAAGCCAGACCGGGAGTCCCGGCCTCCCGCCGGCCG--TCTCTCTCTCCCGCCC-GGGCCCGCGCGGTTATCCGCCAGAGGGACAGTTGGCCCAATATGTCAAGACCTCTGATCACTAGATCCCCTGCATCTCCGCTGAACAACCAAGGCATCCCTACACCGGCACAACTCACAAAATCCAGTGCACCTGTCCACATTGATGTGGGCGGCCACATGTACACCAGCAGCCTGGCCACCCTCACCAAATACCCTGTAATCTGAATCGGAAGACTTTTTGATGGTACAGAGCCCATTGTTTTGGACAGTCTCAAACAGCACTGTTT i macFas5.chr15 I 305 I 3 s papAnu2.chr15 94467425 491 + 107442819 ATATTAAACAATTAAATCACTGACAGGCTCCACCCC-----GGGCGGCCCCAGACATGGGTTTCCCGCGGCAACACCCGCGGCACACCCGGCGCAGGCGCTGCCCTGATCCCCCGGCTCCAGGGGGCAATGAGGGGGCAGTGGAAGGGGCACTACTCCTCGGGCATTACTTAGAGAAGCCAGACCGGGAGTCCCGGCCTCCCGCCGgccgtctctctctctcccgccc-AGGCCCGCGCGGTTATCCGCCAGAGGGACAGTCGGCCCAATATGTCAAGACCTCTGATCACTAGATCCCCTGCATCTCCGCTGAACAACCAAGGCATCCCTACACCGGCACAACTCACAAAATCCAGTGCACCTGTCCACATTGATGTGGGCGGCCACATGTACACCAGCAGCCTGGCCACCCTCACCAAATACCCTGTAACCAGAATCGGAAGACTTTTTGATGGTACAGAGCCCATTGTTTTGGACAGTCTCAaacagcactgttt i papAnu2.chr15 I 305 I 3 s chlSab2.chr12 98679333 463 + 108555830 attttaaacaattaaatcactgacaGGTTCCACCCC-----GGGCTGCCCCAGACATGGGTTTCCCGCGGCAACACCCGCGGCACGCCCGGCGTAGGCGCTGCCCCGATCCCCCGGCTCCAGGGGGCAATGAGGGGGCAGTGGAAGGGGCACTACTCCTCGGGCATTACTTACAGAAGCCAGACCGGGAGTCCCGGCCTCCCACCG-----------------------------GCGCAGTTGTCCGCCACAGGGACAGTCGGTCCAATATGTCAAGACCTCTGATCACTAGATCCCCTGCATCTCCGCTGAACAACCAAGGCATCCCTACACCGGCACAACTCACAAAATCCAGTGCACCTGTCCACACTGATGTGGGCGGCCACATGTACACCAGCAGCCTGGCCACGCTCACCAAATACCCTGTAACCAGAATCGGAAGACCTTTTGATGATACAGAACCCATTGGTTTGGACAGTCTCAAACAGCACTATTT i chlSab2.chr12 I 312 I 3 e calJac3.chr1 77071193 843 + 210400635 I a score=83611.000000 s hg38.chr9_GL383542v1_alt 1853 153 + 60032 CACTGACAGAGATGGACAGATGTTCAGATATATCTTGAATTTTCTACGAACATCCAAACTCCTCATTCTTGATGATTTCAAGGACTACACTTTGTTATATGAAGAGGCAAAATATTTTCAGCTTCAGCCCATGTTGTTGGAGATGGAAAGATG s panTro4.chr9 86945245 153 + 137840987 CACTGACAGAGATGGACAGATGTTCAGATATATCTTGAATTTTCTACAAACATCCAAACTCCTCATTCTTGATGATTTCAAGGACTACACTTCGTTATATGAAGAGGCAAAATATTTTCAGCTTCAGCTCATGTTGTTGGAGATGGAAAGATG i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83574994 153 + 135191526 CACTGACGGAGATGGACAGATGTTCAGATATATCTTGAATTTTCTACGAACATCCAAACTCCTCATTCCTGATGATTTCAAGGACTACACTTTGTTATATGAAGAGGCAAAATATTTTCAGCTTCAGCCCATGTTGTTGGAGATGGAAAGATG i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76094584 153 - 122973662 CACTGACAGAGATGGACAGATGTTCAGATACATCTTGAATTTTCTACGAACATCCAAACTCCTCATTCCTGAAGATTTCAAGGACTACACTTTGTTATATGAAGAGGCAAAATATTTTCAGCTTCAGCCCATGTTGTTGGAGATGGAAAGATG i nomLeu3.chr1a C 0 C 0 e calJac3.chr1 77071193 843 + 210400635 I e chlSab2.chr12 98679796 3 + 108555830 I e papAnu2.chr15 94467916 3 + 107442819 I e macFas5.chr15 98754355 3 + 112612857 I e rheMac3.chr15 97534447 3 + 112192347 I a score=1820598.000000 s hg38.chr9_GL383542v1_alt 2006 823 + 60032 GAAGCAGGACAGAGAAACTGGTCGCTTTTCAAGGCCCTGTGAGTGCCTTGTTGTTTGTGTGGCCCCAGACCTCAGAGAAAGGATCACGCTAAGTGGTGACAAATCCTTGGTAGAAGAAGTGTTTCCAGAGATCGGCGATGTGATGTGCAACTTTATCAGTGCAGGCTGGAATCACGACTCCACGCACATCGTCAGGTTTCCACTAAGTGGCTACTGTCACCTCAACTCAGTCCAGGTCCTCGAGAGGTTGCAGCAAAGAGGATTTGAAATCGTGGGCTCCTGTAGGGGAGGAGTGGGCTTGTCCTAGTTCAGCAAATACGTCCTTCATAGGGAACTGAGGCGGATGCCTTCCCGTAC---CCTCCATCATCTGGATAAAGCAAGAGCCTCTGGACTAAACGGACATATTTCTTATGCAAAAAGGAAAACACACACAACTAA-----TAAACA--AATAATAAAAAAGGGACATTTGTGTGCAGTTGGGACAGAAAACCAAGTCCTGCACCTAAAATTGAATAAAAGATGCATTTATATGCAATAGAGACCACACCTGTATTCATATGGGAACAATTGGAATAGTGATATCCTCAAGGTG----------AAAAAAAAAAata------------------------------------------------tatatatatatatatat--------------------GTCAAAAGGTAGGAAATGCaaaaaagaaaa---aaaaaaaaaGGTGACAGCCGCAGTTGGTGCTGTGATAGCCATGAAATATCCTGGGCCCCCCGAGGCCTCTGACCAATAAACAAGCCGTGAATGGTGAGG--ACAGTTTCCTCACAGTTTCCATTGCCAACAGCCAtccattctttctttttcctttgtctttctttttccttttTT s panTro4.chr9 86945398 838 + 137840987 GAAGCAGGACAGAGAAACTGGTCGCTTTTCAAGGCCCTGTGAGTGCCTTGTTGTTTGTGTGGCCCCAGACCTCAGAGAAAGGATCACGCTAAGTGGTGACAAATCCTTGGTAGAAGAAGTGTTTCCAGAGATCGGCGATGTGATGTGCAACTTTGTCAGTGCAGGCTGGAATCACGACTCCACGCACGTCGTCAGGTTTCCACTAAGTGGCTACTGTCACCTCAACTCAGTCCAGGTCCTCGAGAGGTTGCAGCAAAGAGGATCTGAAATCATGGGCTCCTGTAGGGGAGGAGTGGGCTCGTCCTAGTTCAGCAAATACGTCCTTCATAGGGAACTGAGGCGGATGCCCTCCTGTAC---CCTCCATCATCTGGATAAAGCAAGAGCCTCTGGACTAAACGGACATATTTCTTATGCAAAAAGGAAAACACA----ACTAA-----TAAACA--AATAATAAAAAAGGGACATTTGTGTGCAGTTGGGACAGCAAACCAAGTCCTGGACCTAAAATTGAATAAAAGATGCATTTATATGCAATAGAGACCACACCTGTATTCATATGGGAACAATTGGAATAGTGATATCCTCAAGGTG----------AAAAatatatata------------------------------------------------tatatatatatatatatatatatatatatatatatatGTCAAAAGGTAGGAAATGCAAAAAAGAAAA---AAAAAAAA-GGTGACAGCCGCAGTTGGTGCTGTGATGGCCATGAAATATCCTGGGCCCCCCGAGGCCTCTGACCAATAAACAAGCCATGAATGGTGAGG--ACAGTTTCCTCACAGTTTCCATTGCCAACAGCCATCCATTCTTTCTTTTTCCTTTGTCTTTCTTTTCCCTTTTTT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83575147 849 + 135191526 GAAGCAGGACAGAGAAACTGGTCGCTTTTCAAGGCCTTGTGAGTGCCTTGTTGTTTGTGTGGCCCCAGACCTCAGAGAAAGGATCACGCTAAGTGGTGACAAATCCTTGGTAGAAGAAGTGTTTCCAGAGATCGGCGATGTGATGTGCAACTTTGTCAGTGCAGGCTGGAATCACGACTCCACGCACGTCGTCAGGTTTCCACTAAGTGGCTACTGTCACCTCAACTCAGTCTAGGTCCTCAAGAGGTTGCAGCAAAGAGGATTTGAAATCGTGGGCTCCTGTGGGGGAGGAGTGGGCTCGTCCTAGTTCAGCAAATATGTCCTTCGTAGGGAACTGAGGCGGATGCCCTCCCGTAC---CCTCCATCATCCGGATAAAGCAAGAGCCTCTGGACTAAACGGACATATTTCTTATGCAAAAAGGAAAACACACACAACTAATAACTTAAACA--AACAACAAAAAAGGGACATTTATGTGTAGTTGGGACAGCAAACCAAGTCCTGGACCTAAAATTGAATAAAAGA--CATTTATATGCAATAGAGACCACACCTGTATTCATATGGGAACAATCGGAATAGTGATATCCTCAAGGTGaaaaaaaaaaaaaaaaatatata------------------------------------------------tatatatatatatatatatatatatatatatatatatgtcaaaaggtaggaaatgcagaaaaaaaaa---aaaaaa---GGTGAGAGCCGCAGTTGGTGCTGTGATGGCCATGAAGTATCCTGGGCCCCCCGAGGCCTCTGACCAATAAACAAGCCATGAGCGGTGAGG--ACAGTCTCCCTACAGTTTCCATTGCCAACAGCCATCCATTCTTTCTTTTTCCTTTG----TCTTTTTCCTTATTT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76094737 889 - 122973662 GAAGCAGGACAGAGAAACTGGTCGCTTTTCAAGGCCCTGTGAGTGCCTTGTTGTTTGTGTGGCCCCAGACCTCACAGAAAGGATCACGCTAAGTGGTGATACATCCTTGGTAGAAGAAGTATTTCCAGAGATCGGCGATGTGATGTGCAACTTTGTCAGTGCAGGCTGGAATCACGACTCCATGCACGTCGTCAGGTTTCCACTAAGTGGCTACTGTCAC-----CTCTGTCTAGGTCCTCGAGAGGTTGCAGCAAAGAGGATTTGAAATCGTGGGCTCCTGTGGGGGAGGAGTGGGCTCATCCTAGTTCAGCAAATACATCCTTCGTAGGGAACTGAGGCGGATGCCCTCCCGTACCCTCCTCCATCATCCGGATAAAGCAAGAGCCTCTGGACTAAACGGACATATTCCTTATGCAAAAAGGAAAACACACACAACTAATAACTCAAACA--AACAACAAAAAA-GGACATTTATGTGCAGTTGGGACAGCAAACCAAGTCCTGGACCTAAAGTTGAATAAAAGACATATTTATATGCAATAGAGACCACACCTGTATTCATATGGGAACAATTGGAACAGTGATATCCTCAAGGTG---------AAAAAAAatatgtacatatgtatatatatatGTGTGTGTGTGtatatatatatatgtgtgtgtatatatatatatatatatatatatatatatatatatGTCAAAAGGTAGGAAATGCaaaaaagaaaa---aaaaaaaa-GGTGATAGCCGTAGTTGGTGCTGTGATGGCCATGAAGTATCCTGGGCCCCCCGAGGCCTCTGACCAATAAACAAGCCATGAGCGGTTAGG--ACAGTCTCCTTACAGTTTCCATTGTCAACAGCCATCCATTCtttctttttcctttgtctttctttttcctt---- i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 97534450 823 + 112192347 GAAGTAGGACAGAGAAACTGGTCGTTTTTAAAGGCCCTGTGAGTGCCTTGTTGTGCGTGTGGACCCAGACCTCAGAGAAAGGATTACACTAAGCAGTGACAAATCCCCGACAGAAGAAGTATTTCCAGAGATCGGCGACGTGATGTGTAACTCTGTCAATGCAGACTAGAATCACGACCTAACACACATCGTCAGGTTTCCACTAAGTGGCTACTGTCACCTCATCTCAGTCCAGGTCCTCGAGAGGTTGCAGCAAAGAGGATTTGAAATCGTGGGCTCCTGTGGGGAAGGAGTGGGCTCATCCTAGTTCAGCGAATGCGTCCTTCATAGGGAACTGAGGCGGACGTCCGTCCGTAC---CCTCCATCACCCAGATAAAGCAAGAGCCCCTGGACTAAACGGACATATTTCTTATGCAAAAAGGAAAACACATACAACTAATAGCTCAAACAACAACAACAAAAAA-GGACATTTATGTGCAGTTGGGACAGCAAACCAAGTCCTGGACCTAAACTTGAATAAAAGACACATTTATATCCAATAGAGACCACACCTGTATTCATATGGGAACAATTGTAATAGTGATATCCTCGAGGTG-------ttaaaaaaaat-----------------------------------------------------tatatatatat--------------------------GTCAAAAGATAGGAAATGAAAAAAAGAAGA---AAAAAAAAGGGTGCTAGCCGCAGTTGGTGGTGTGATGGCCATGAAGTGTCCTGGGCCTCCCGAGGCCTCTGACCAATAAACAATCCATGGGCAGTGAGGACACAGTCTCCTTACAGTTTCCATTGCCAACAGCCATCCATTAtttcttttccctttgtctttccttttcctttttt i rheMac3.chr15 I 3 I 34 s macFas5.chr15 98754358 823 + 112612857 GAAGTAGGACAGAGAAACTGGTCGTTTTTAAAGGCCCTGTGAGTGCCTTGTTGTGCATGTGGACCCAGACCTCAGAGAAAGGATTACACTAAGCAGTGACAAATCCCCGACAGAAGAAGTATTTCCAGAGATCGGCGACGTGATGTGTAACTCTGTCAATGCAGACTAGAATCACGACCTAACACACATCGTCAGGTTTCCACTAAGTGGCTACTGTCACCTCATCTCAGTCCAGGTCCTCGAGAGGTTGCAGCAAAGAGGATTTGAAATCGTGGGCTCCTGTGGGGAAGGAGTGGGCTCATCCTAGTTCAGCGAATGCGTCCTTCATAGGGAACTGAGGCGGACGTCCGTCCGTAC---CCTCCATCACCCAGATAAAGCAAGAGCCCCTGGACTAAACGGACATATTTCTTATGCAAAAAGGAAAACACATACAACTAATAGCTCAAACAACAACAACAAAAAA-GGACATTTATGTGCAGTTGGGACAGCAAACCAAGTCCTGGACCTAAACTTGAATAAAAGACACATTTATATCCAATAGAGACCACACCTGTATTCATATGGGAACAATTGTAATAGTGATATCCTCGAGGTG-------TTAAAAAAAAT-----------------------------------------------------TATATATATAT--------------------------GTCAAAAGATAGGAAATGAAAAAAAGAAGA---AAAAAAAAGGGTGCTAGCCGCAGTTGGTGGTGTGATGGCCATGAAGTGTCCTGGGCCTCCCGAGGCCTCTGACTAATAAACAAGCCATGAGCGGTGAGGACACAGTCTCCTTACAGTTTCCATTGCCAACAGCCATCCATTAtttcttttccctttgtctttccttttcctttttt i macFas5.chr15 I 3 I 13 s papAnu2.chr15 94467919 820 + 107442819 gaagtAGGACAGAGAAACTGGTCGTTTTTAAAGGCCCTGTGAGTGCCTTGTTGCGCGTGTGGACCCAGACCTCAGGGAAAGGATTACACTAAGCAGTGACAAATCCCTGATAGAAGAAGTATTTCCAGAGATCGGCGACGTGATGTGTAACTCTGTCAATGCCGACTAGAATCACGACCTAACACACGTCGTCAGGTTTCCACTAAGTGGCTACTGTCACCTCATCTCAGTCCAGGTCCTCGAGAGGTTGCAGCAAAGAGGATTTGAAATCGTGGGCTCCTGTGGGGAAGGAGTGGGCTCGTCCTAGTTCTGCGAATGCGTCCTTCATAGGGAACTGAGGCGGACGTCCCCCCGTAC---CCTCCATCACCCAGATAAAGCAAGAGCCTCTGGACTAAACGGACATATTTCTTatgcaaaaaggaaaacacatacaactaatagctcaaacaacaacaac-aaaaa-ggacattTATGTGCAGTTCAGAGAGCAAACCAAGTCCTGGACCTAAACTTGAATAAAAGACACATTTATATCCAATAGAGACCACACCTGTATTCATATGGGAACAATTGGAATAATGATATCCTCAAggtg-------tt-aaaaaaat-----------------------------------------------------tatatatatat--------------------------gtcaaaagataggaaatgaaaaaaagaaga---aaaaaaaagggtgcTAGCCGCAGTTGGTGGTGTGATGGCCATGAAGTGTCCTGGGCCTCCCGA-GCCTCTGACTAATAAACAAGCCATGAGCGGTGAGGACACAGTCTCCTTACAGTTTCCATTGCCAACAGCcatccattatttctttttcctttgtctttccttttcctttttt i papAnu2.chr15 I 3 I 3 s chlSab2.chr12 98679799 826 + 108555830 GAAGCAGGACAGAGAAACTGGTCGTTTTTAAAGGCCCTGTGAGTGCCTTGTTGCACGTGTGGACCCAGACCTCAGAGAAAGGATTACGCTAAGCAGTGACAAATCCCCGATAGAAGAAGTATTTCCAGAGATCTGCGACGTGATGTGTGACTCTGTCAATGCAGACTAGAATCACGACTCAACACACGTCATCAGGTTTCCACTAAGTGGCTACTGTCGCCTCATCTCAGTCCAGGTCCTCGAGAGGTTGCAGCAAAGAGGATTTGAAACGGTGGGCTCCTGTGGGGAAGGAGTGGGCTCGTCCTAGTTCAGCGAATGCCTCCTTCATAGGGAACTGAGGCGGACGTCCCCCCGTAC---CCTCCATCACCCAGATAAAGTAAGAGCCTCTGGACTAAACGGACATATTTCTTATGCAAAAAGGAAAACACATACAACTAATAGCTCAAACAACAACAAC-AAAAA-GGACGTTTATGTGCAGTTGGGAGAGCAAACCAAGTCCTGGACCTAAACTTGAATAAAAGACACATTTATATCCACTAGAGACCACACCTGTATTCATATGGGAACAACTGGAATAATGATATCCTCAAGGTG-------TTAAAAAAAAT---TA------------------------------------------------TATATATATAT--------------------------GTCAAAAGATAGGAAATGaaaaaaagaaaaaagaaaaaaaaGGGTGCTAGCCACAGTTGGTGGTGTGATGGCCATGAAGTGTCCTGGGCCTCCCGA-GCCTCTGACTAATAAACAAGCCATGAGCCGTGAGGACACAGTCTCCTTACAGTTTCCATTGCCAGCAGCCATCCATTCtttctttttcctttgtctttccttttcctttttt i chlSab2.chr12 I 3 I 34 e calJac3.chr1 77071193 843 + 210400635 I a score=-586.000000 s hg38.chr9_GL383542v1_alt 2829 7 + 60032 aa--a--aaac s panTro4.chr9 86946236 7 + 137840987 AA--a--aaac i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83575996 9 + 135191526 aaaca--aaac i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76095626 5 - 122973662 ----t--aaaa i nomLeu3.chr1a C 0 C 0 s macFas5.chr15 98755194 7 + 112612857 ----Aaacaac i macFas5.chr15 I 13 I 3 e calJac3.chr1 77071193 843 + 210400635 I e chlSab2.chr12 98680625 34 + 108555830 I e papAnu2.chr15 94468739 3 + 107442819 I e rheMac3.chr15 97535273 34 + 112192347 I a score=155126.000000 s hg38.chr9_GL383542v1_alt 2836 310 + 60032 aaaacaaaacaaaa-aaaaacaaGCccaggcgtggtggctcacgcctgtaatcccagcactctaagaggccgaggcaggcggatcacctgaggtcgggagttcgagaccagcctgaccaaaatggagaaaccccgtctctact------aaaacaaatacaaaattagccaggtgttgtggcacatgcctgtaattccagctactcgggaggctgaggcaggagaattgcttgaaccctggaggcggaggttgtggtgggctgagattgtgccattgcactccagtcggggcaaggagagcgaaactctgtctcaaa s panTro4.chr9 86946243 311 + 137840987 aaaacaaaacaaaacaaaaACAAGCccaggcgtggtggctcacgcctgtaatcccagcactctgagaggccgaggcaggccgatcacctgaggtcgggagttcgagaccagcctgaccaacctggagaaaccccgtctctact------aaaacaaatacaaaattagccaggtgtggtggcacatgcctgtaattccagctacttgggaggctgaggcaggagaattgcttgaacccgggaggcggaggttgtggtgggctgagattgtgccattgcactccagtcggggcaaggagagcaaaactctgtctcaaa i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83576005 310 + 135191526 aaaacaaaaccaaa-aaaaaAAAggccaggcccggtggctcacgcctgtaatcccagcactttgacaggccgaggcgggcggatcacctgaggtcgggagttcgagaccagcctgaccaacatggagaaaccccgtccctact------aaaacaaatacaaaattagccaggcatggtggcacatgcctgtaatcccagctactcgggaggctgaggcaggagaattgcttgaacccgggaggcagaggttgtgctgggctgagattgtgccattgcactccagcctgggcaaggagagcgaaactctgtctcaaa i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76095631 315 - 122973662 aaaacaaaa-aaaa-aaaaaCACggccgggcatggtggctcacgcctgtaatcccagcactttgagaggccgaggcgggcggatcacctgaggttgggagttcgagaccagcctgaccaacatggagaaactctgtctttactaaaaaaaaaaaaaaaacaaaattagccaggtgtggtggcacatgcctgtaatcccagctactcgggaggctgaggcaggagaattgcttgaacccgggaggcagaggttgtggtgggccgagattgtgccattgcactccagcctgggcaaggagagcgaaactctgtctaaaa i nomLeu3.chr1a C 0 C 0 e calJac3.chr1 77071193 843 + 210400635 I e chlSab2.chr12 98680625 34 + 108555830 I e papAnu2.chr15 94468739 3 + 107442819 I e macFas5.chr15 98755201 3 + 112612857 I e rheMac3.chr15 97535273 34 + 112192347 I a score=2385.000000 s hg38.chr9_GL383542v1_alt 3146 13 + 60032 aaaaaaaaaaaaa s panTro4.chr9 86946554 7 + 137840987 aaaaaaa------ i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83576315 9 + 135191526 aaaaaaa----aa i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76095946 7 - 122973662 aaaaaaa------ i nomLeu3.chr1a C 0 C 0 s papAnu2.chr15 94468742 13 + 107442819 aaaaaaaacaaca i papAnu2.chr15 I 3 I 2 e calJac3.chr1 77071193 843 + 210400635 I e chlSab2.chr12 98680625 34 + 108555830 I e macFas5.chr15 98755201 3 + 112612857 I e rheMac3.chr15 97535273 34 + 112192347 I a score=2270.000000 s hg38.chr9_GL383542v1_alt 3159 8 + 60032 aaaaaaaa s ponAbe2.chr9 83576324 8 + 135191526 aaaaaaaa i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76095953 1 - 122973662 -------a i nomLeu3.chr1a C 0 C 0 s macFas5.chr15 98755204 8 + 112612857 aacaacaa i macFas5.chr15 I 3 C 0 s papAnu2.chr15 94468757 8 + 107442819 aacaacaa i papAnu2.chr15 I 2 C 0 e calJac3.chr1 77071193 843 + 210400635 I e chlSab2.chr12 98680625 34 + 108555830 I e rheMac3.chr15 97535273 34 + 112192347 I e panTro4.chr9 86946561 0 + 137840987 C a score=311.000000 s hg38.chr9_GL383542v1_alt 3167 6 + 60032 aaaaGC s panTro4.chr9 86946561 2 + 137840987 ----GC i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83576332 6 + 135191526 aaaaGC i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76095954 6 - 122973662 aaaCAC i nomLeu3.chr1a C 0 C 0 s macFas5.chr15 98755212 3 + 112612857 --aaa- i macFas5.chr15 C 0 C 0 s papAnu2.chr15 94468765 4 + 107442819 --aaac i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 98680659 6 + 108555830 aaaaac i chlSab2.chr12 I 34 C 0 e calJac3.chr1 77071193 843 + 210400635 I e rheMac3.chr15 97535273 34 + 112192347 I a score=86626.000000 s hg38.chr9_GL383542v1_alt 3173 34 + 60032 ACCTTGAATCAAGTTTCTTTGTATATGGAGGTTC s panTro4.chr9 86946563 34 + 137840987 ACCTTGAATCAAGTTTCTTTGTATATGGAGGTTC i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83576338 34 + 135191526 ACCTTCAATCAAGTTTCTTTGTATATGGAGGTTC i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76095960 34 - 122973662 ACCTTGAATCAAGTTTCTTTGTATATGGAGGTTC i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 97535307 34 + 112192347 ACCTTGAATCAAGTTTCTTTGTATATGGAGGTTC i rheMac3.chr15 I 34 I 16 s macFas5.chr15 98755215 34 + 112612857 ACCTTGAATCAAGTTTCTTTGTATATGGAGGTTC i macFas5.chr15 C 0 C 0 s papAnu2.chr15 94468769 34 + 107442819 accttgAATCAAGTTTCTTTGTATACGGAGGTTC i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 98680665 34 + 108555830 aCCTTGAATCAAGTTTCTTTGTATACGGAGGTTC i chlSab2.chr12 C 0 C 0 e calJac3.chr1 77071193 843 + 210400635 I a score=34352.000000 s hg38.chr9_GL383542v1_alt 3207 33 + 60032 TACGTCTCTCTTTAGGCAGGGACCAGGCAGGAC s panTro4.chr9 86946597 33 + 137840987 CACGTCTCTCTTTAGGCAGGGACCAGGCAGGAC i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83576372 33 + 135191526 CACATCTCTCTTTAGGCAAGGACCAGGCAGGAC i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76095994 33 - 122973662 CACGACTCTCTTTAGGTAGGGACCAGGCAGGAC i nomLeu3.chr1a C 0 C 0 s macFas5.chr15 98755249 16 + 112612857 --CA-CCCTCTCATGGGTG-------------- i macFas5.chr15 C 0 C 0 s papAnu2.chr15 94468803 33 + 107442819 CACATCTCTCTTTTGGCAGGGACCGGGCAAGAC i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 98680699 33 + 108555830 CACATCTCTCTTTTGGCAGGGACCGGGCAAGAC i chlSab2.chr12 C 0 C 0 e calJac3.chr1 77071193 843 + 210400635 I e rheMac3.chr15 97535341 16 + 112192347 I a score=2028830.000000 s hg38.chr9_GL383542v1_alt 3240 860 + 60032 TTCAGAAAAACCCTCATGAGCACATTGCATTTGAAAGATGTTAGACATGAAATGCTAAATGTAGTTTGTACAGAAGTCACACCTTTTTGTCCACCTCACAGATGTGAACTTT----------------------------------------ATTATTCCTTGTTAGAATTGCTCCAGTTCAAGTCTGCTGCTTTCCTGCAATTTTTCAAATTTTATATTGTATTAAATACAATAAAGTCTGTTTAAAAAATAAGGTCTGTGTGAAACACACGTGTGGGGGTCAGGCTGGATTAAAATGAAATTTTTCtttaaaaaaaaaaacactgacaaaaagcacaaaaatgccaaaaatgtgacactaaatagacagtgataacgacaaggtaacagtatgacagctgaaacaagaggcagcgcattgccttgtttgacctcagctaagaactgtgcctggagaaacacatttttcactgctcggggcatgcttgtgaatgactgaggaggcgtgacaatgattgatttgggggttacaaataaatttcagcgagcaggcaaatttggaagtttggaa-ctgcaaataatgagAGTAtctcatgaagccactagaggatgtccttttgcccaaaaagagaattcagccaaaaagaagaaattttgcgatatagaatacagaagattcaacccaggaaggattgaagTGGGTGggaaaggcatcttcagaaagaggaaagtgataaaatacctgatgaacctgattatactgagaagagacttagataactggtggaaaattgtgcttggattaacgacgattatatatatttttaaaaccaagttaataaacaataggctgggcatggtggctcatgcctataatcccagcactttgggaggccaag s panTro4.chr9 86946630 857 + 137840987 TTCAGAAAAACCCTCATGAGCACATTGCATTTGAAAGATGTTAGACATGAAATGCTAAATGTAGTTTCTACAGAAGTCACACCTTTTTGTCCACCTCACAGATGTGAACTTT----------------------------------------ATTATTCCTTGTTAGAATTGCTCCAGTTCAAGTCTGCTGCTTTCCTGCAATTTTTCAAATTTTATATTGTATTAAATACAATAAAGTCTGTTTTAAAAATAAGGTCTGTGTGAAACACACGTGTGGGGGTCAGGCTGGATTAAAATGAAATTTTTCtttaaaaaaaaaatcactgacaaaaagcacaaaaatgccaaaaatgtgacactaaatagacagtgataaa---aaggtaacagtatgacagctgaaacaagaggcagcgcattgccttgtttgacctcagctaagaactgtgcctggagaaacacatttttcactgctcggggcatgcttgtgaatgactgaggaggcgtgacaatgattgatttgggggttacaaataaatttcagcgagcaggcaaatttggaagtttggaa-ctgcaaataatgagAGTAtctcatgaagccactagaggatgtccttttgcccaaaaagacaattcagccaaaaagaagaaattttgcgatatagaatacagaagattcaacccaggaaggattgaagTGGGTGggaaaggcatcttcagaaagaggaaagtgataaaatacctgatgaacctgattatactgagaagagacttagataactggtggaaaattgtgcttggattaacgacgattatatatatttttaaaaccaagttaataaacaataggctgggcatggtggctcatgcctataatcccagcactttgggaggccaag i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83576405 858 + 135191526 TTCAGAAAAACCCTCAAGAGCACATTGCATTTGAAATATTTTAGACATGAAATGCTAAATGTAGTTTGTACAGAAGTCACACCTTTTTGTCCACCTCACAGATGTGAACTTT----------------------------------------ATTATTCCTTGTTAGAATTGCTCCAGTTCAAGTCTGCTGCTTTCCTACAATTTTTCAAATTTTATAATGTATTAAATACAATAAA--CTCTTTAAAAAATAAGGTCTGTGTGAAACACACGTGTGGGGGTCAGGCTGGATTAAAATGAAATTTTTCttt-taaaaaaaataactgacaaaaagcacaaaaatgccaaaaatgtgacactaaatagacagtgataacgacacggttacagtatgacagctgaaacaagaggcagcgcattgccttatttgaccttagctaagaactgtgcctggagaaacacatctttcactgctcggggcatgcttgtgaatgactgaggaggcctgacaattattgatttgggggtttcaaataaatttcagggagcaggcaaatttggaagtttggaacctgcaaataatgagAGTAtctcatgaaaccactagaggatgtccttttgcccaaaaagagtattcagccaaaaagaagaaattttgcgatatagaaaacagaagattcaacccaggaaggattgaagTGGGTGggaaaggcatcttcagaaagaggaaagtgataaaatacctgatgaacctgattatgctgagaagagacttagataactggtggaaaattgtgcttggattaacgatgattatatatatttttaaaaccaagttaataaacaattggctgggcatggtggctcatgcctgtaatcccagcactttgggaggccaag i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76096027 857 - 122973662 TTCAGAAAAACCCT-ATAAGCACATTGCATTTGAAGGATGTTAGACATGAAATGCTAAACGTAGTTTGTACAGAAGTCGCACCTTTTTGTCCACCTCACAGATGTGAACTTC----------------------------------------ATTATTCCTTGTTAGAATTGCTCCAGTTCAAGTCTGCTGCTTTCCTACAATTTTTCAAATTTTATAATGTATTAAATACAATAAACTCTGTTTAAAAAATAAGGTCTATGTGAAACACACGTGTGGGGGTCAGGCTGGATTAAAATGAAATTTTTCttt-taaaaaaagtcactgacaaaaagcacaaaaatgccaaaaatgtgacactaaatagacagtgataacgacaccgttacagtatgacagctgaaataagaggcagcgcattgccttgtgtgacctcagctaagaactgtgcctggagaagcacatttttcactgcttggggcgtgcttgtgaatgactgaggaggcctgacaatgattgatttgggggttacaaataaatttcagcaagcaggcaaatttggaagtttggaacctgcaaataatgagAGTAtctcatgaagccactagaggatgtccttttgcccaaaaaga--attcagccaaaaagaagaaattttgcgatacagaaaacagaagattcaacccaggaaggattgaagTGGGTGggaaaggtgtcttcagaaagaggaaagtgataaaatacctgatgaacctgattatactgagaagagacttagacaactggtggaaaattgtgcttggattaacgacgattatatatatatttaaaaccaagttaataaacaataggctgggcatggtgactcatgcctgtaatcccagcactttgggaggccaag i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 97535357 899 + 112192347 TTCAGAAAAACCCTCATGAGCACATTGCATTTGAAAGATGTTAGACACGAAATGCTAAATGTAGTTTGTACAGAAGTCACACTTTTTTGTCCACCTCACAGATGTGAACTTTACTTTGTTTTAAAACTAATCAGTTTTGCCAAGGGGCCAGAATTATTCCTTGTTTGAATTGCTCCCGTTCAAGTCTGCTGCTTTCCTACAATTTTTCAAATTTTATAATGTATTAAATACGATAAA--CTGTTTAAAAAATAAGGTCTGTGTGAAACACACGTGTAGGGATCAGGCTGGATTAAAATGAAATTTTTCtttaaaaaaaaaattactgacaaaaagcacaaaaatgtacaacatgtgacactaaatagatggtgatcaggacacggttacagtacgacagttgaaacaagaggcagcacactgccttgtttgacctcagctaagaactgtgcctgcagaaacacatttttcaccgctcggggcacgcttgtgaatgactgaggaggcctgacaatgattgattcgggggttacaaataaatttcagcgagcaggcaaatttggaagtttggaacctgcaaataatgagAGTAtctcatgaagccactagaggatgtccttttgcccaaaaagagaattcagtcaaaaagaagaaattttgtgatacagaaaacagaagattcaacccaggaagaattggagTGGGTGggaaaggcgtcttcagaaataagaaagtgataaaatactcgatgcacctgattatactgagaagagacttaaataactggtggaaaattgtgcttggattaatgacgattatatatgtatttaaaaccaagttaataaaCAATAggccaggcacggtggctcacgcctgtaatcccagcactttgggaggccaag i rheMac3.chr15 I 16 I 248 s macFas5.chr15 98755265 898 + 112612857 TTCAGAAAAACCCTCATGAGCACATTGCATTTGAAAGATGTTAGACACGAAATGCTAAATGTAGTTTGTACAGAAGTCACACTTTTTTGTCCACCTCACAGATGTGAACTTTACTTTGTTTTAAAACTAATCAGTTTTGCCAAGGGGCCAGAATTATTCCTTGTTTGAATTGCTCCCGTTCAAGTCTGCTGCTTTCCTACAATTTTTCAAATTTTATAATGTATTAAATACGATAAA--CTGTTTAAAAAATAAGGTCTGTGTGAAACACACGTGTAGGGATCAGGCTGGATTAAAATGAAATTTTTCttt-aaaaaaaaattactgacaaaaagcacaaaaatgtacaacatgtgacactaaatagatggtgatcaggacacggttacagtacgacagttgaaacaagaggcagcacactgccttgtttgacctcagctaagaactgtgcctgcagaaacacatttttcaccactcggggcacgcttgtgaatgactgaggaggcctgacaatgattgattcgggggttacaaataaatttcagcgagcaggcaaatttggaagtttggaacctgcaaataatgagAGTAtctcatgaagccactagaggatgtccttttgcccaaaaagagaattcagtcaaaaagaagaaattttgtgatacagaaaacagaagattcaacccaggaagaattggagTGGGTGGGAAAGGCGTCTTCAGAAATAAGAAAGTGATAAAATACTCGATGCACCTGATTATACTGAGAAGAGACTTAAATAACTGGTGGAAAATTGTGCTTGGATTAACGACGATTATATATGTATTTAAAACCAAGTTAATAAACAATAggccaggcttggtggctcacgcctgtaatcccagcactttgggaggccaag i macFas5.chr15 C 0 C 0 s papAnu2.chr15 94468836 893 + 107442819 TTCAGAAAAACCCTCATGAGCACACTGCATTTGAAAGATGTTAGACACGAAATGCTAAATGTAGTTTGTACAGAAGTCACAC---TTTGTCCACCTCACAGATGTGAactttactttgttttaaaactaATCAGTTTTGCCAAGGGGCCAGAATTATTCCTTGTTTGAATTGCTCCCGTTCAAGTCTGCTGCTTTCctacaatttttcaaattttataatgtattaaatacgataaa--ctgtttaaaaaataaggtcTGTGTGAAACACACGTGTAGGGATCAGGCtggattaaaatgaaatttttctat-taaaaaaaattactga-aaaaagcacaaaaatgtacAACATGTGACACTAAATAGATGGTGATCAGGACACCGTTATAGTACGACGGTTGAAACAAGAGGCAGCACACTGCCTTG-TTGACCTCAGCTAAGAACTGCGCCTGCAGAAACACGTTTTTCACCGCTCGGGGCGCGCTTGTGAATGACTGAGGAGGCCTGACAATGATTGATTcgggggttacaaataaatttcagcGAGCAGGCAAATTTGGAAGTTTGGAACCTGCAAATAATGAGAGTATCTCATGAAGCCACTAGAGGATGTCCTTTTGCCCAAAAAGAGAATTCagtcaaaaagaagaaatgttgtGATATAGAAAACAGAAGATTCAACCCAGGAAGGATTGGAGTGGGTGGGAAAGGAGTCTTCAGAAATAGGAAAGTGATAAAACACTCGATGCACCTGATTATACTGAGAAGAGACTTAAATAACTGGTGGAAAATTGTGCTTGGATTAACGAcgattatatatgtatttaaaaccaAGTTAATAaacaataggccaggcatggtggctcacgcctgtaatcccagcactttgggaggccaag i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 98680732 898 + 108555830 TTCAGAAAAACCCTTATGAGCACATTGCATTTGAAAGATGTTAGACACGAAATGCTAAATGTAGTTTGTACAGAAGTCACACTTTTTTGTCCACCTCACAGATGTGAACTTTACTTTGTTTTAAAACTAATCAGTTTTGCCAAGGGGCCAGAATTATTCCTTGTTTGAATTGCTCCCGTTCAAGTCTGCTGCTTTCCTACAATTTTTCAAATTTTATAATGTATTAAATACGATAAA--CTGTTTAAAAAATAAGGTCTGTGTGAAACACACGTGTAGGGATCAGGCTGGATTAAAATGAAATTTTTGttt-taaaaaaaattactgacaaaaagcacaaaaatgtacaacatgtgacactaaatagacggtgatcaagacaccgttacagtacgacagttgaaacaagaggcagcacactgccttgtttgacctcagctgagaactgtgcctgcagaaacacatttttcaccgctcggggcatgcttgtgaatgactgaggaggcctgacaatgactgattcgggggttacaaataaatttcagcgagcaggcaaatttggaagtttggaacctgcaaataatgagAGTAtctcatgaagccactagaggatgtccttttgcccaaaaagagaattcagccgaaaagaagaaattttgtgatatagaaaacagaagattcaacccaggaaggaTTGGAGTGGTTGggaaaggcgtcttcagaaagaggaaagtgataaaataaccgatgcacctgattatactgagaagagacttaaataactggtggaaaattgtgcttgaattaacgataattatatatgtatttaaaaccaagtgaataaacaataggccaggtgtggtagctcacgcctgtaatcccagtactttgggagtccaaa i chlSab2.chr12 C 0 C 0 e calJac3.chr1 77071193 843 + 210400635 I a score=137356.000000 s hg38.chr9_GL383542v1_alt 4100 77 + 60032 gtgggtggatcacctgaggtctggagttcgagaccagcctgaccaacacggtaaaatcccgtctctactaaaagtac s panTro4.chr9 86947487 77 + 137840987 gtgggtggatcacctgaggtctggagttcgagaccagcctgaccaacacggtaaaatcccgtctctactaaaaatac i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83577263 77 + 135191526 gtgggtggatcacctgaggtctggagtttgagaccagcctgaccaacatggtaaaatcccgtctctactaaaaatac i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76096884 77 - 122973662 gtgggtggatcacctgaggtctggagttcgagaccagcctgaccaacatggtaaaatcccgtctctactaaaactaa i nomLeu3.chr1a C 0 C 0 s macFas5.chr15 98756163 76 + 112612857 gtgggtggatcacctaaggtctggagtt-gagaccagcctgaccaacatggtgaaaccccgtctctactaaatatac i macFas5.chr15 C 0 I 317 s papAnu2.chr15 94469729 76 + 107442819 gtgggtggatcacctgaggtctggagtt-gagaccagcctgaccaacatggtgaaaccccgtctctactaaatatac i papAnu2.chr15 C 0 I 169 s chlSab2.chr12 98681630 76 + 108555830 gtgggtggatcacctgaggtctggagtt-gagaccagcctgaccaacatggtgaaatcccgtctctactaaaaatac i chlSab2.chr12 C 0 C 0 e calJac3.chr1 77071193 843 + 210400635 I e rheMac3.chr15 97536256 248 + 112192347 I a score=1179.000000 s hg38.chr9_GL383542v1_alt 4177 1 + 60032 a s panTro4.chr9 86947564 1 + 137840987 a i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83577340 1 + 135191526 a i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76096961 1 - 122973662 a i nomLeu3.chr1a C 0 C 0 s macFas5.chr15 98756556 1 + 112612857 g i macFas5.chr15 I 317 C 0 s papAnu2.chr15 94469974 1 + 107442819 a i papAnu2.chr15 I 169 C 0 s chlSab2.chr12 98681706 1 + 108555830 a i chlSab2.chr12 C 0 C 0 e calJac3.chr1 77071193 843 + 210400635 I e rheMac3.chr15 97536256 248 + 112192347 I a score=405705.000000 s hg38.chr9_GL383542v1_alt 4178 172 + 60032 aaattagctggctgtggtggcacatgtttgtaatcccagctactcaggaggctgaggcaggagaattgattgaacccgggaggcagaggttgtggtgagccaagatggcgccactgcactccagcctgggcaataagagtgaaactccgtctcaacgaaaaaaaaaaaaaaa s panTro4.chr9 86947565 172 + 137840987 aaattagctggctgtggtggcacatgtttgtaatcccagctactcaggaggctgaggcaggagaattgattgaacccgggaggcagaggttgtggtgagccaagatggcgccactgcactccagcctgggcaataagagtgaaactccgtctcaacaaaaaaaaaaaaaaga i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83577341 172 + 135191526 aaattagctggctgtggtggcacatgtttgtaatcccagctaatcaggaggctgaggcaggagaattgattgaacccgggaggcagaggttgtggtgagccaagatggcgccactgcactccagcctgggcaataagagtgaaactccgtctcaacaaaaaaaaagaaaaga i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76096962 172 - 122973662 aaattagctggctgtggtggcacatgtttgtaatcccagctactcaggaggctgaggcaggagaattgattgaacctgggaggcagaggttgtggtgagccaagatggcgccactgcactccagcctgggcaataagagtgaaactccatctcaacaaaaaaaaaaaaaaga i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 97536504 172 + 112192347 aaattagctgggtgtggtggcacatgcttgtaatcccagttactcgggaggctgaggcagaagaattgcttgaacccgagaggcagaggttgcagtgagccaagatggcgccattgcactccagcctgggcaataagagtgaaactccgtctcaacaacaacggaaaaaaGG i rheMac3.chr15 I 248 C 0 s macFas5.chr15 98756557 172 + 112612857 aaattagctgggtgtggtggcacatgcttgtaatcccagttactcaggaggctgaggcagaagaattgcttgaacccgggaggcagaggttgcagtgagccaagatggcgccattgcactccagcctgggcaataagagtgaaactccgtctcaacaacaacggaaaaaaGG i macFas5.chr15 C 0 C 0 s papAnu2.chr15 94469975 172 + 107442819 aaattagctgggtgtggtggcgcatgcttgtaatccgggttactcgggaggctgaggcaggagaattgcttgaacccgggaggcagaggttgcagtgagccaagatggcgccattgcactccagcctgggcaataagagtgaaactccgtctcaacaacaaaaaaaaggggg i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 98681707 172 + 108555830 aaattagctgggtgtgatggcacatgcttataatcccagttactcgggaggctgaggtgggagaattgcttgaacctgggaggcggaggttgcagtaagccaagatggcgccattgcactctagcctgggcaataagagtgaaactccgtctcaacaacaacaaaaacaacg i chlSab2.chr12 C 0 C 0 e calJac3.chr1 77071193 843 + 210400635 I a score=1484665.000000 s hg38.chr9_GL383542v1_alt 4350 502 + 60032 a--a---------------aaaacaataaaatgaacactatctctagggaaaacaaaaagttggggtagaaaaggaaaagccaacatagg----cttttgcaaaaatctcagtgacagcagatatgtctatcactgtcataatgtgagtagtgagcactgttctaccaacaccaggatgcgaccgtcttgacagcacagggaggggagtgggaagcatggaattctgtggtggggctggggagccaatagag--ggtctgcaagtccaaaatttcaagatgggacaacataagcatgttgtttgcagatacagcaggtaaattccccccaagaaaaagcattctgggttggggaaaagctggggtggggtgtagggcacagggtgtaagaaaatgctgtatttttctataagcattcttagaatatctcctgatacatgtatataataactttcataaaaataaaaATTAGGGGAAGAAGATGGGTTTT-GAGTGACGGAAGAAAAATTGAAGTATCCAGATGATG s panTro4.chr9 86947737 511 + 137840987 a--a------gaaaagaaaaaaacaataaaatgaacactatctctagggaaaacaaaaagttggggtagaaaaggaaaagccaacatagg----cttttgcaaaaatctcagtgacagcagatatgtctatcactgtcataatgtgagtagtgagcactgttctaccaacaccaggatgcgaccgtcttgacagcacagggaggggagtgggaagcatggaattctgtggtggggctggggagccaatagag--ggtctgcaagtccaaaatttcaagatgggacaacataagcatgttgtttgcagatacagcaggtaaattccccccaagaaaaagcattctgggttggggaaaatctggggtggggtgtagggcacagggtgtaagaaaatgctgtatttttctataagcattcttagaatatctcctgatacatgtatataataactttcataaaaataaaaATTAGGGGAAGAAGATGGGTTTT-GAGTGACGGAAGAAAAATTGAAGTATCCAGATGACA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83577513 499 + 135191526 a--a---------------aaaacaataaaatgaacactatctttagggaaaacaaaaagtgggggtagaaaaggaaaagccaacatagg----cttttgcaaaaatctcagtgacagcagatatgtctatcactgtgataatgtgagtagtgagcactgttctaccaacaccaggatgcaaccgtcttgatagcacagggaggggagtggaaagcatggaattctgtggtggggctgggaagccaatagag--gatctgcaagtccaaaatttcaagatgggacaacataagcatgttgtttgcagatacagcaggtaaatt---cccaagaaaaagcattctgggttggggaaaagctgggatggggtatagggcacagggtgtaagagaatgctgtatttttctataagcattcttagaatatctcctgatacatgtatataataattttcataaaaacaaaaATTGGGGGAAGAAGATGGGTTTT-GAGTGACGGAAGAAAAATTGAAGTATCCAGATGATG i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76097134 518 - 122973662 a--aaaaaaagaaaagaaaaaaacaataaaacgaacactatctctagggaaaacaaaaagttggggtagaaaaggaaaagccaacatagg----cttttgcaaaaatctcagtgacagcagatatgtccatcactgtcataatgtgagtagtgagcactgttctaccaacaccaggatgcgaccgtcttgacagcacgggaaggggagtgggaaggatggaattctgtggtggggctgggaaggcaatagag--gatctgcaagtccaaaatttcaagatgggacaacataagcatgttgtttgcagatacagcaggtaaattccccccaagaaaaagcattctgggttggggaaaagctggggtggggtgtagggcacagggtgtaagagaatgctgtatttttctataagcattcttagaatatctcctgatacatgtatataataactttcataaaaataaaaATTGGGGGAAGAAGATGGGTTTTCGAGTGACGGAAGAAAAATTGAAGTATCCAGATGATG i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 97536676 513 + 112192347 G--G--------GGGAAAATAAACAATAAAATGAACGCTATCTCTAGGGAAAACAAAAAGTTGGGGTAGAAAAGGAAATACCAACATAGATAGGCTTTTGCAAAAATCTCAGTGACAGCAGACGTGTCTATTACTGTCATAACGTGAGTAGTGAGCACTGTTCTACCAGCACAAGGATGCCACCGTCTTGACAGCACGGGGAGGGGAGTGGGAAGGATGGAAGTCTGTGGTGGGGCTGGGAAGGCAACAGGG--GATCTGCAAGTCCAAAATTTTAAGATGCGACAACATAAGCATGTTGTTTGCAGATGCAGCAGGTAAATTCCCCCCAAGAAAAAGCATTCTGGGTTGGGGAAAAGCTGGGGTGGTGTGTAGGACACAGGGTGTAAGAGAATGCTGTATTTTGCTATAAGCATTCTTAGAATATCTCCTGATACATGTATATAATAACTTTCATAATAATAAAAATTGGGGGAAGAAGATGGGTTTT-GAGTGATGGAAGAAAAATTGAAGTATCCAGATGATG i rheMac3.chr15 C 0 C 0 s macFas5.chr15 98756729 513 + 112612857 G--G--------GGGGAAATAAACAATAAAATGAACGCTATCTCTAGGGAAAACAAAAAGTTGGGGTAGAAAAGGAAATACCAACATAGATAGGCTTTTGCAAAAATCTCAGTGACAGCAGACATGTCTATTACTGTCATAACGTGAGTAGTGAGCACTGTTCTACCAGCACAAGGATGCCACCGTCTTGACAGCACGGGGAGGGGAGTGGGAAGGATGGAAGTCTGTGGTGGGGCTGGGAAGGCAACAGGG--GATCTGCAAGTCCAAAATTTTAAGATGCGACAACATAAGCATGTTGTTTGCAGATGCAGCAGGTAAATTCCCCCCAAGAAAAAGCATTCTGGGTTGGGGAAAAGCTGGGGTGGTGTGTAGGACACAGGGTGCAAGAGAATGCTGTATTTTGCTATAAGCATTCTTAGAATATCTCCTGATACATGTATATAATAACTTTCATAATAATAAAAATTGGGGGAAGAAGATGGGTTTT-GAGTGATGGAAGAAAAATTGAAGTATCCAGATGATG i macFas5.chr15 C 0 C 0 s papAnu2.chr15 94470147 514 + 107442819 ggag--------gggggaataaacaataaaatgaacGCTATCTctagggaaaacaaaaagttggggTAGAAAAGGAAATACCAACATAGATAGGCTTTTACAAAAATCTCAGTGACAGCAGACATGTCTATTACTGTCATAACGTGAGTAGTGAGCACTGTTCTACCAGCACCAGGATGCCACCGTCTTGACAGCACggggaggggagtgggaaggATGGAAGTCTGTGGTGGGGCTGGGAAGGCAACAGGG--GATCTGCAAGTCCAAAATTTCAAGATGCGACAACATAAGCATGTTGTTTGCAGATGCAGCAGGTAAATTCCCCCCAAGAAAAAGCATTCTGGGTTGGGGAAAAGCTGGGGTGGTGTGTAGGACACA-GGTGTAAGAGAATGCTGTATTTTGCTATAAGCATTCTTAGAATATCTCCCGATACATGTATATAATaactttcataataataaaaattggggGAAGAAGATGGGTTTT-GAGTGATGGAAGAAAAATTGAAGTATCCAGATGATG i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 98681879 511 + 108555830 g--g--------gaaaaaataaacaataaaatgaacgctatctctagggaaaacaaaaagttggggtagaaaaggaaaaaccaacataga----cttttgcaaaaatctcagtgacagcagacatgtctattactgtcataacgtgagtagtgagcactgttctaccagcaccaggatgcaaccctcttgacagcacggggaggggagtgggaaggatggaagtctgtggtggggctaggaaggcaacaggggagatctgcaagtccaaaatttcaagatgcgacaacataagcatgttgtttgcagatacagcaggtaaattccccccaagaaaaagcattctgagttggggaaaacctggggtggtgtgtaggacacagggtgtaagagaatgctgtattttgctataagcattcttagaatatgtcctgatacatgtatataataactttcataataataaaaATTGGGGGAAGAAGATGGGTTTT-GAGTGATGGAAGAAAAATTGAAGTATCCAGATGATG i chlSab2.chr12 C 0 C 0 s calJac3.chr1 77072036 493 + 210400635 -----------------aacaaatggtaaaatgaacactatctctagggaaaacaaaaa--------agaaaaggaaaagCCAATGTAGG----CTTTTGCAAAAATCTCAGCAACAGCAGACATTTCTATCACGGTCATAATGTGAGGGGTGAGCATGGATCTACCAACACCAGGATGCGACTATCATGATGGCCCAGG-AGGGGACTGGGAAGCATGGAAGTCTGTGGTGGGGCtgggaaggcaacaaag--gagctgcaagttcaaaatttcaagacatgccaacatatgcatgttgttagcagatacagcaggtaaattccccccaagaaaaagcattctgtgttgggggaaagttggggtgatgtgtagggcacagggtgtaagagaatgctatattttgctataagcattcttagaacatttcctgatacatgtatataataactttcataaaaataaaaATTGGGGGAAGAAGATGGGTTTT-GAGTGATGAAAGAAAAACTGAAGTATCCAGATGATG i calJac3.chr1 I 843 I 2998 a score=8196738.000000 s hg38.chr9_GL383542v1_alt 4852 2747 + 60032 TGGTAGTCAGGGCTGTTAACAATGTCCTTGGAAAATTCCAGGCTGAGAGCCAATAAACACAAAGCCCAGAATGGGGCTCAGGCAGATTGCCCAGGAGGCTGCAGAGCAGCATTCAGGGTCAGTGGGCCACCATGCCTTTCTGACACCCTGTATGTGGAGCTGCTGGAGCGACAGCTTTGGACCCAAGTGATGGACGCTCTGAAGAGAAAACAAAACATTCCTGGGTGGGGAAGGAGAATCAAAATATAAGCCCAAGAACTCCCTACTTTTAGAGCAGA-CCCCAAGCCCGGGTCCAAG-CCCCCT-GGATAAGGAGAGGAGTGGGAAATCAAACTCAGAAGGCAA-CCCCTGCTCCCATGCCA-GAGGACCACACAGTCTT--CCACTCCCAGGTTCACCAGTGTAGGGTTTCTTCCATGACAATTGGCATCGGACC--ACCAGGACTTTCCCCTTGGGCTGAGGAAACCCAATGTTTAATACAGACCCTCAACTACA-CACAGGAACAGAAAACCTGGAATCAATCATTTGAGGAAACAGAAGTAGCCCCAAAGAAAACAAAACTAGTAAGGCAAAGAGGAAAGGATTTTCATCATAAGTATAATGAATATCCTGAGAATCGTTTAAGTAGATACTGCATTTTTT-----AAGTGTTATGAAAAAAA---TTAACTTATTGAAAATGTTAATGAATGGAAAGTCtttttttttttt------aatgttttaga-tgaagtctcactctgtagcccagactggagtgcagtggcatgatcttggctcactgcaacctccgcctcccaggttcaagcaattctcctgcctcagcctcctgagtagctgggattacaggaacacaccatcatgc--ccagctaatttttg-tattttcagtagagacaaggtttcaccatgttggccaggctggtcttgaactcctgacctcaggtgatccacccacctcagcttcccaaagtgctgggattacaggcgtgagccaccgcacctggccACAGATGGAAAGTGTTAACTGTGAGTtgtccagcttcttggcaagttgaacaaagaattaaacaaaacacacaaaacagcaaaagaagaaagaagcaatgaaagtgcagacttactgaagtgaaactatgctccagagagtgggagcaggctggagcaagtggctcaagagcccagattacaatgttctttagggtttctattaagctaaaagaatttggtaacaccccctag---------------gtgccctttagaggcctctaattgattacacactttgaaggattggcccacagccaatcaaaggctgaagtggagacctcgcctgtgaccaataagaggctgaagtgaagagttggcctgtagccaatcagaggctgaagtggagacttctgtctggttatcacaggagtgagggtctggcctgtaggctgcttaaccttgcctagaa----ctgcatctgctgtccttttgcttacgccttaacccttggttaccccaactccctattcttccacctcaAAAATT-ACAATGATTGCCAAAATGAAAATAGGCCAGTAGATAAGGCCAGTAAATGAGGCcagtagatgtacaatagcaaagtggacacagctgaagataaaatttgtaaactaaaagattaagaaattatcccagaatgcaatacaaacaaatataagagacaggggagatagatccagaaattccagtggccatctaataggaattctagaaggaaaacataACCTTCATAATTTGGGCAAGGAGGGAGTACTTTCTAAGAATGTTACAAAATCCaaaataaaagattgtcaaatgtgacattataaaagtcaaaatgttggtactgcaaaaaagaaatgagcaaaactaaaacataagtgacagtcttggagaaaatatttgcatcattcataacatgtgaaaacttaacgtcaaaaatac--agagaatttctgcaaatttgct----aaaaaagagagggaaggagtagaaaaatgcacaaaGaaaatgatgtgagagaacaaggaaaggatactggctgggttttgatggaggtcagtggctgggcccgaggtgtaggttcctccgtgagggcagggtctggtgtggtgtgaatctcccactggtgctgaaggagggagcaccagcctgtccagtggtgggcagagaggaagagagaggggccaggcttgaaagcaatgagcagtcagacc-ccaaaaatggctttattacagttctaatgccagaaatttaa-ttttttctcaaacctcaaaataatct---ctcagaaaagtaaataaatgacataattgggatgttttgaaaatcattttcaaaagccaccataaagcagtagtaaatactttccagaacaaaaggcagccaatgcggataattattaggagctcaaccatc---attatctcgcaccccaaaacagccagccttccagcctttagtgcgct----aactggagtctgacagaagccccaaagacaaagacatagcctttagt-aaaaaataagaaagacctttgaatttatgagtccatgtgccataagaacatccagaatattctgacagaggcttcaaactcctgctgccatcgtcacagtctattcttgtgggttacgttctaatttagtaACTGGGGAAACATCTCCCCGCCTGGCTGCCACTCAGAG-AGCTGGGTTTAGACTCATCATTCCTTTCTTTGACATTAAAAAAGGGTCATCATTTATTTAAGAAGTTTTATTTCAGACTTTTGTGTATGGCAGAGTAA s panTro4.chr9 86948248 2759 + 137840987 TGGTAGTCAGGGCTGTTAACAATgtccttggaaaattccaggcttagagccaataaacacaaagcccagaatggggctcaggcagattgcccaggcggctacagagcagcattcagggtcagtgggccaccatgcctctctgacaccctgtatgtggagctgctggagcaacagctttggacccaagTGATGGACGCTCTGAAGAGAAAACAAAACATTCCTGGGTGGGGAAGGAGAATCAAAATATAAGCCCAAGAACTCCCTACTTTTAGAGCAGA-CCCCAAGCCAGGGTCCAAG-CCCCGT-GGATAAGGAGAGGAGTGGGAAATCAAACTCAGAAGGCAA-CCCCTGCTCCCATGCCA-GAGGACCACACAGTCTTTTCCACTCCCAGGTTCACCAGTGTAGGGTTTCTTCCATGACAATTGGCATCGGACC--ACCAGGAGTTTCCTCTTGGGCTAAGGAAACCCAATGTTTAATACAGACCCTCAACTACA-CACAGGAACAGAAAACCTGGAATCAATCATTTGAGGAAACAGAAGTAGCCCCAAAGAAAACAAAACTAGTAGGGCAAAGAGGAAAGGATTTTCATCATAAGTATAATGAATATCCTGAGAATCATTTAAGTAGATACTGCATTTTTT-----AAGTGTTATGAAAAAAA--ATTAACTTATTGAAAATGTTAATGAATGGAAAGTCttttttttttttttttttaatgttttaga-tgaagtctcactctgtagcccagactggagtgcagtggcatgatcttggctcactgcaacctctgcctcccaggttcaagcaattctcctgcctcagcctcctgagtagctgggattacaggaacacaccatcatgc--ccagctaatttttg-tattttcagtagagacaaggtttcaccatgttggccaggctggtcttgaactcctgacctcaggtgatccacccacctcagcttcccaaagtgctgggattacaggtgtgagccaccgcacctggccACAGATGGAAAGTGTTGACTGTGAGTtgtccagcttcttggcaagttgaacaaagaattaaacaaaacacacaaaacagcaaaagaagaaagaagcaatgaaagtgcagatttactgaagtgaaagtatgctccagagagtgggagcag-ctggagcaagtggctcaagagcccagattacaatgttctttagggtttctattaagctaaaagaatttggtaacaccccctag---------------gtgccctttagaggcctctaattgattacacactttgaaggattggcccacagctaatcaaaggctgaagtggagacctcgcctgtgaccaatcagaggctgaagtgaagagttggcctgtagccagtcagaggctgaagtggagacttctgtctggttatcacaggagtgagggtctggcctgtaggctgcttaaccttgcctagaa----ctgcatctgctgtccttttgcttacaccttaacccttggttaccccaactccctattcttccacctcaAAAATT-ACAATGATTGCCAAAATGAAAATAGGCCAGTAGATAAGGCCAGTAAATGAGGCcagtagatgtacaatagcaaagtggacacagctgaagataaaatttgtaaactaaaagattaagaaattatcccagaatgcaatacaaacaaatataagagacaggggagatagatccacaaattccagtggccatctaataggaattctagaaggaaaacataACCTTCATAATTTGGGCAAGGAGGGAGTACTTTCTAAGAATGTTACAAAATCCaaaataaaagattgtcaaatgtgacattataaaagtcaaaatgttggtactgcaaaaaagaaatgagcaaaactaaaacataagtgacagtcttggagaaaatatttgcatcattcataacatgtgaaaacttaatgtcaaaaatac--agagaatttctgcaaatttgct----aaaaaagagagggaaggagtagaaaaatgcacaaaGaaaatgatgtgagagaacaaggaaaggatactggctgggttttgatggaggtcagtggctgggcccgaggtgtaggttcctccgtgagggcagggtctggtgtggtgtgaatctcccactggtgctgaaggagggagcaccaccctgtccagtggtgggcagagaggaagagagaggggccaggcttgaaagcaatgagcagtcagacc-ccaaaaatggctttattacagttctaatgccagaaatttaa-ttttttctcaaacctcaaaataatat---ctcagaaaagtaaataaatgacataattgggatgttttgaaaatcattttcaaaagccaccataaagcagtagtaaatactttccagaacaaaaggcagccaatgcggataattattaggagctcaaccatc---attatctcgcaccccaaaacagccagccttccagcctttagtgtgcttactaactggagtctgacagaagccccaaagacaaagacatagcctttagt-aaaaaataagaaagacctttgaatttatgagtccatgtgccataagaacatccagaatgttctgacagaggcttcaaactcctgctgccatcgtcacagtctattcttgtgggttatgttctaatttagtaACTGGGGAAACATCTCCCCGCCTGGCTGCCACTCAGAG-AGCTGGGTTTAGACTCATCATTCCTTTCTTTGACATTAAAAAAGGGTCATCATTTATTTAAGAAGTTTTATTTCAGACTTTTGTGTATGGCAGAGTAA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83578012 2764 + 135191526 TGGTAGTCACGGCTGTTAACAATGTCCTTGGAAAATTCCAGGCTTAGAGCCAATAAACACAAAGCCCAGAATGGGGCTCAGGCAGATTGCCCAGGAGGCTGCAGAGCAGCATTCAGGGTCAGTGAGCCACCATGCCTCTCTGACACCCTGTACGTGGAGCTGCTGGAGCGACAGCTTTGGACCCAAGTGATGGACGCTCTGAAGAGAAAACCAAACATTCCTGGGTGGGGAAGGAGAATCAAAATACAAGCCCAAGAACTCCCTACTTTTAGAACAGA-CCCCAAGCCAGGGTCCAAG-CCCCCT-GGATAAGGAGAGGAGTGGGAAATCAAACTCAGAAGGCAACCCCCTGCTCCCATGCCA-GAGGACCACACAGTCTTTTCCACTCCCAGGTTCACCAGTGTAGGGTTTCTTCCATGACAATTGGCATCAGACC--ACCAGGAGTTTCCCCTTGGGCTGAGGAAACCCAATGTTTAATACAGACCCTCAACTACA-CACAGGAACAGAAAACCTGGAATCAATCATTTGAGGAAACAGAAGTAGCCCCAAAGAAAACAAAACTAGTAGGGCAAAGAGGAAAGGATTTTCATCATAAGTATAACGAATATCCTGAGAATAGTTTAAGTAGATACTGCATTTTTT-----AAGTGTTATGAAAAAAA--ATTAACTTATTGAAAATATTAATGGATGGAAAGTCtttttttttttt--ttttaatgttttaga-tgaagtctcactctgtagcccagactggagtgcagtggcacgatcttggctcactgcaacctccgcctcccaggttcaagcaattctcctgcctcagcctcctgagtagctgggattacaggaacacatcatcatgc--ccagctaatttttg-tattttcagtagagacaaggtttcaccacattggccaggctggtcttgaactcctaacctcaggtgatccacccacctcggcttcccaaagtgctgggattgcaggcgtgagccacagcacctggccACAGATGGAAAGTGTTGACTGTGAGTtgtccagcttcttggcatgctgaacaaagaattgaacaaaacacacaaaacagcagaagaagaaagaagcaatgaaagtgcagatttactgaagtgaaagtatgctccagagagtggaagcaggctggagcaagtggctcaagagcccagattacaatgttctttagggtttttattaagctaaaagaatttggtaacaccccttag---------------ctgccctttagaggcctctaattgattacaccctttgaaggattggcccacagccaatcaaaggctgaagtggagacttcgcctgtgaccaatcagaagctgaagtgaagagctggcctgtagccaatcagaggctgaagtggagacttctgtctggttatcacaggagtgagggtctggcctgtaggctgcttaaccttgcctagaactagctgcatctgctgtccttttgcttacgccttaacccttggttaccccaactccctattcttccacctcaAAAATT-ACAATGATTGCCAAAATAAAAATAGGCCAGTAGATGAGGCCAGTAAATGAGGccagtagatgtacaatagcaaaatggacacagctgaagataaaatttgtaaactaaaagattgagaaattatcccagaatgcaatacaaacaaatgtaagagacaggggagatagatccagaaattccagcggccatctaataggaattctagaaagaaaacataACCTTCATAATTTGGGCAAGGAGGGAGTACTTTCTAAGAATGTTACAAAATCC-AAATAAAAGATTGTCAAATGTGACATTATAAAAGTCAAAATGTTGGTACTGCAAAAAAGAAATGAGCAAAACTAAAACATAAGTGACAGTCTTGGAGAAAATATTTGCATCATTCATAACATGTGAAAACTTAACGTCAAAAATACAGAGAGAATTTCTGCAAATTTGCT----TAAAAAGAGAGGGAAGGAGTAGAAAAATGCACAAAGaaaatgatgtgagagaacaaggaaaggatactggctgggttttgatggaggtcagtggctaggcccgaggtgtaggttcctccgtgagggtagggtctggtgtggcgtgaatctcccaccggtgctgaaggagggagcaccggcctgtccagtggtgggcagagaggaagagaaaggggccaggcttgaaagcaatgagcagtcagacc-cccaaaaTGGTTTTATTTTAGTTCTAATGCTAGAaatttaa-ttttttctcaaacctcaaaataatct---ctcagaaaagtaaacaaatgacataattgggatgttttgaaaatcattttcaaaagccactataaagcagtcgtaaatactttccagaacaaaaggcagccaatgcggataattattaggagctcaatcatc---attatctcacaccccaaaacagccagccttccagcctttagtgcgcttactaactggagtctgacagaggccccaaagtcaaagacatagtctttagt-aaaaaataagaaagatctttgaatttatgagtccatgtgccataagaacatccagaatgttctgacagaggcttcaaactcctgctgccttcgtcacagtctattcttgtgggttacgttctaatttagtaACTGGGGAAACATCTCCCCGCCTGGCTGCCACTCAGAG-AGCTGGGTTTAGACACATCACTCCTTTCTTTGACATTAAAAAAGGGTCATCATTTATTTAAGAAGTTTTATTTCAGACTTTTGTGTATGGCAGAGTAA i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76097652 2751 - 122973662 TGGTAGTCAGGGCTGTTAACAATATCCTTGGAAAATTCCAGGCTTACAGCCAATAAACACAAAGCCCAGAATGGGGCTCAGGCAGATTGCCCAGGAGGCTGCAGAGCAGCATTCAGGGTCGGTGGGCTACCATGCCTCTCTGACACCCTGTACGTGGAGCTGCTGGAGCGACAGCTTTGGACCCGAGTGATGGACGCTCTGAAGAGAAAACAAAACCTTCCTGGGTGGGGAATGAGAATCAAAATACAAGCCCAAGAACTCCCCACTTTTAGAGCAGA-CCCCAAGCCAGGGTCCAAG-CCCCCTGGGATAAGGAGAGGAGTGGGAAATCAAACTCAGAAGGCAA-CCCCC-CTCCCATGCCCTGAGGACCACACAGTCTTTTCCTTTCCCAGGTTCACCAGTGTAGAGTCTCTTCCCTGACAATTGGCATCAGACCCACCCACGAGTTTCCCCTTGGGCTGATGAAACCCAATGTTCACTACATACCCCC-ACTACACCACAGGAACAGAAACCTGGAATTCAATCATTGAGGGAAACAGAAGTAGCCCCAAAGAAAATAAAACTAGTAGGGCAAAGAGGAAAGGATTTTCATCATAAGTATAATGAATATCCTGAGAATAGTTTAAGTAGATACTGCATTTTTT-----AAGTGTTATGGAAAAAA---TTAACTTATTGAAAATGTTAATGGATGGAAAGTCAttttttttttt----ttaatgttttaaa-tgaagtctcactctgtagcccagactggagtgcagtggcacaatcttggctcactgcaacctccgcctcccaggttcaagcaattctcctgcctcagcctcctgagtagctgggattacaggagcacaccatcatgc--ccagctaatttttg-tattttcagtagagacaaggtttcaccatgttggccaggctggtcttgaactcctgacctcaggtgatccatccacctcggcttcccaaagtgctgggattacaggcgtcagccattgcatctggccACAGATGGAAAGTGGTGACTGTGAGTtgtccagcttcttggcatgttgaacaaagaactgaacaaaacacacaaaacagcaaaagaagaaagaagcaatgaaaatgcagatttactgaagtgaaagtatgctcc--agagtgggagcaggctggagcaagtggctcaagagcccagattacaatgttctttagggtttttattaagctaaaagaatttggtaacaccccctag---------------gtgccctttagaggcgtctaattgattacaccctttgaaggattggcccacagccaatcaaaggctgcagtggagacttcacctgtgaccaatcagaggctgaagtgaagagttggcctgtagccaatcagaggctgaagtggagacttctgtctggttatcacaggagtgacggtctggcctgtaggctgcttaacgttgcctagaactagctgcatctgc-gtccttttgcttacaccttaacccttggttaccccaactccctattcttccacctcaAAAATT-ACAATGATTGCCAAAATAAAAATAGGCCAGTAGATGAGGCCAGTAAATGAGGCcagtagatgtacaatagcaaaatggacacagctgaagataaaatttgtaaactaaaagattaagaaattatcccggaatgcaatacaaacaaatataagagacaggggagatagatccagaaattccagtggccatctaataggaattctagaaggaaaAC--aaccttcataatttgggcaaggagggagtactttctaagaatgttacaaaatccaaaataaaagattgtcaaatgtgacattataaaagtcaaaatgttggtacagcaaaaaagaaatgagcaaaactaaaacataagtgacagtcttggagaaaatatttgcatcattcataacatgtgaaaacttaacgtcaaaaatacagagagaatttctgcaaacttgct----aaaaaagagaaataacgagttgaaaaatgcacaaagaaaatgatgtgagagaacaaggaaaggatactggctgggttttgatggaggtcagtggctgggcccgaggtgtagcttcctccatgagggcagggtctggtgtggtgtgaatctcctactggcgctgaaggagggagcaccagcctgtccagtggtgggcagagag--------aggggccaggcttgaaagcaatgagcagtcagacc-cccaaaaTGGGTTTATTacggttctaatgccagaaatttaa-ttttttctcaaacctcaaaataatct---ctcagaaaagtaaataaatgacataattgggatgttttgaaaatcattttcaaaaaccatcataaagcagtagtaaatactttccagaacaaaaggcagccaatgcggataattattaggagctcaaccatc---attatctcacaccccaaaacagccaaccttccagcctttagtgcacttactaactggagtctgacagaggccccaaagtcaaagacatagcctttagt-aaaaagtaagaaagatctttgaatttatgagtccatgtgccataagaacatccagaatgttctgacagagccttcaaactcctgctgccatcgtcacagtctattcctgtgggttacgttctaatttagtaACTGGGGAAACATCTCCCCGCCTGGCTGCCACTCAGAG-AGCTGGGTTTAGACTCATCACTCCTTTCTTTGACATTAAAAAAGGGTCATCATTTATTTAAGAAGTTTTATTTCAGACTTTTGTGTATGGCAGAGTAC i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 97537189 2766 + 112192347 TAGTAGTCAGGGTTGTTAACAATGTCCTTGGAAAATTCCAGGCTTAGAGCCAATAAACACAAAGCCCAGAATGGGGCTCAGGCAGATTGCCCAGGAGGCTGCAGAGCCGCATTCAGGGTCGGTGGGCCACCATGCCTCTCTGTCACCCTCCA--TGGAGCTGCTGGAGCGACAGCTTTGGACCCAAGTGATGGACACTGTGAAGAGAAAACAAAACCTTCCTGGGTGGGGAAGGAGAATCAAAACACAAGCCC-AGAACTCCCCACTTTTAGAGCAGA-CCCCAAGCCAGGGTCCAAG-CCCCCT-GGATAAGGAGAGGAGTGGGAAATCAAACTCAGAAGGCAACCCCCTGCTCCCATGCCA-GAGGACCACACAGTCTTTTCCACTCCCAGGTTGACCAGTGTAGGGTTTCTTCCATGACAATTACCATCGGACC--ACCAGGAGTTTCCCCATGGGCTGAGGAAACCCAATGTTTAATACAGACCCTCAACTACA-CACAGGAACAGAAAACCTGGAATCAATCATTTGAGGAAACAGAAGTAGCCCCAAAGAAAACAAAACTACTAGGGCAAAGAGGAAAGGATTTTCATCATAAGTATAATGAATATCCTGAGAATAGTTTAAGTAGATACTGCATTTTTT-----AAGTGTTATGAAAAAAAA-ATTAACTTATTGAAAATGTTACTGGATGGAAAGTCAtttttttctt-------aatgttttaga-tggagtctcactttgtagctcagactggagtgcagtggcacgatcttggctcactgcaacctctgtctcccaggttcaagcaattctcctgcctcagcctcctgagcagctgggattacaggcacacaccatcatgc--ccagctaatttttgtttttttcagtagatacagggtttcactatgttggccaggctggtctcgaattcctgacctca--tgatccactcacctcggcctctcaacgtgctgggattacaggcgtgagccaccatgcctggccACAGATGGAAAGTGTTGACTGTGAGTtgtccagcttcttggtatgttgaacaaagaatttgacaaaacacacaagacagagaaagaagaaagaagcaacgaaagtgcagatttactgaagcgaaagtatgcttcagagagtgatagcaggctggagcaagtggctcaagagcccagattacaatgttctttagggtttttattaagctaaaagaatttggtaacaccccctag---------------gtgccctttagaggcctctaattgattacaccctttgaaggactggcctacagccaatcaaaggctgcagtggagacttcacctgtgaccaatcagaggctgaagtgaagagttggcctgcagccaatcagaggctgaagtggagacttctgtctggttatcacaggagtgagggtgtggcctgtaggctgcttaaccttgcctagaactagctgcatctgctgtccttttgcttacgccttaacccttggttgccccaactccctattcttccacctcaAAAATTAACAATGATTGCCAAAATAAAAATAGGCCAGTAGACGAGGCCAGTAAATGAGGCCAGTAGATGTGCGatagcaaaatggacaaagctgaagataaaatttgtaaactaaaagattaagaaattaccccagaatgcaatacagagaaatatgagagacaggggggacagatccagaaattccagcggccatctaacaggaattctagaaggaaaacataACCTTCATAATTTGGGCAGGGA-GGAGTACTTTCTAAGAATGTTACAAAATCCaaaataaaagattgtcaaatgtgacattatgaaagtcaaaatgttggtactgcaaaaaagaaatgagcaaaactaaaacgtaagtgacagtcttggagaaaatatttgcatcattcataacatgtgaaaacttaacgtcaaaaatacagagagaacttctgcaaatttgctaaaaaaaaaagagagggaaggaacagaaaaatgcacaaaGaaaatgatgtgagagaacaaggaaaggttactggctggattttgatggaggtcagtggctggacctgaggtgtaggttcctccatgagggcagggtctggtgtggtgtgaatctcccaccggtgctgaaggagggagcactggtctgtccagtagtggacagagaggaagagagaggggccaggcttgaaagcaatgagcagtcagacc-cccaaaatggctttattacagttctaatgccagaaatttat-ttttttctcaaacctcaaaataatctctcctcagcaaagtaaataaatgacactattggcatgttttgaaaatcatattcaaaagccaccataatgcagtagtaaatacttcccagaacaaaaggcagccaatgcggataattattaggagctcaaccatcattattatctcacagcccaaaacagccaaccttccagcctttaatgcacttactaactggagtcggacagaggccccaaagtcaaagacatagcctttagt-aaaaaataagaaagctctttgaatttatgagtccatgtgccataagaacatccagaatgttctgacagagccttcaaactcctgttgccatcgtcacagtctattcttgtgggttaCACTCT--TTTAGTAACTGGGGAAGCATCTCCCCACATGGCTGCCACTCAGAGAAGCTTGGTTTAGACTCATCACTCCTTTCTTTGACATCAAACAAGGGTCGTCATTTATTTAAGAAGCTGCATTTCAGACTTTTGTGTATGGTAGAGTAA i rheMac3.chr15 C 0 C 0 s macFas5.chr15 98757242 2763 + 112612857 TAGTAGTCAGGGTTGTTAACAATGTCCTTGGAAAATTCCAGGCTTAGAGCCAATAAACACAAAGCCCAGAATGGGGCTCAGGCAGATTGCCCAGGAGGCTGCAGAGCCGCATTCAGGGTCGGTGGGCCACCATGCCTCTCTGTCACCCTCCA--TGGAGCTGCTGGAGCGACAGCTTTGGACCCAAGTGATGGACACTGTGAAGAGAAAACAAAACCTTCCTGGGTGGGGAAGGAGAATCAAAACACAAGCCC-AGAACTCCCCACTTTTAGAGCAGA-CCCCAAGCCAGGGTCCAAG-CCCCCT-GGATAAGGAGAGGAGTGGGAAATCAAACTCAGAAGGCAACCCCCTGCTCCCATGCCA-GAGGACCACACAGTCTTTTCCACTCCCAGGTTGACCAGTGTAGGGTTTCTTCCATGACAATTACCATCGGACC--ACCAGGAGTTTCCCCATGGGCTGAGGAAACCCAATGTTTAATACAGACCCTCAACTACA-CACAGGAACAGAAAACCTGGAATCAATCATTTGAGGAAACAGAAGTAGCCCCAAAGAAAACAAAACTACTAGGGCAAAGAGGAAAGGATTTTCATCATAAGTATAATGAATATCCTGAGAATAGTTTAAGTAGATACTGCATTTTTT-----AAGTGTTATGAAAAAAAA-ATTAACTTATTGAAAATGTTACTGGATGGAAAGTCAtttttttctt-------aatgttttaga-tggagtctcactttgtagctcagactggagtgcagtggcacgatcttggctcactgcaacctccgcctcccaggttcaagcaattctcctgcctcagcctcctgagtagctgggattacaggcacacaccatcatgc--ccagctaatttttg-ttttttcagtagatacagggtttcactatgttggccaggctggtctcgaattcctgacctca--tgatccactcacctcggcctctcaaagtgctgggattacaggcgtgagccaccatgcctggccACAGATGGAAAGTGTTGACTGTGAGTtgtccagcttcttggtatgttgaacaaagaatttgacaaaacacacaagacagagaaagaagaaagaagcaacgaaagtgcagatttactgaagcgaaagtatgcttcagagagtgatagcaggctggagcaagtggctcaagagcccagattacaatgttctttagggtttttattaagctaaaagaatttggtaacaccccctag---------------gtgccctttagaggcctctaattgattacaccctttgaaggactggcctacagccaatcaaaggctgaagtggagacttcacctgtgaccaatcagaggctgaagtgaagagttggcctgcagccaatcagaggccgaagtggagacttctgtctggttatcacaggagtgagggtgtggcctgtaggctgcttaaccttgcctagaactagctgcatctgctgtccttttgcttacgccttaacccttggttgccccaactccctattcttccacctcaAAAATTAACAATGATTGCCAAAATAAAAATAGGCCAGTAGACGAGACCAGTAAATGAGGCCAGTAGATGTGCGatagcaaaatggacaaagctgaagataaaatttgtaaactaaaagattaagaaattaccccagaatgcaatacaaagaaatatgagagacaggggagacagatccagaaattccagtggccatctaacaggaattctagaaggaaaacataACCTTCATAATTTGGGCAGGGA-GGAGTACTTTCTAAGAATGTTACAAAATCCaaaataaaagattgtcaaatgtgacattatgaaagtcaaaatgttggtactgcaaaaaagaaatgagcaaaactaaaacgtaagtgacagtcttggagaaaatatttgcatcattcataacatgtgaaaacttaacgtcaaaaatacagagagaatttctgcaaatttgct--aaaaaaaagagagggaaggaacagaaaaatgcacaaaGaaaatgatgtgagagaacaaggaaaggttactggctggattttgatggaggtcagtggctgggcctgaggtgtaggttcctccatgagggcagggtctggtgtggtgtgaatctcccaccggtgctgaaggagggagcactggtctgtccagtagtggacagagaggaagagagaggggccgggcttgaaagcaataagcagtcagacc-cccaaaatggctttattacagttctaatgccagaaatttat-ttttttctcaaacctcaaaataatctctcctcagcaaagtaaataaatgacattattggcatgttttgaaaatcatattcaaaagccaccataatgcagtagtaaatacttcccagaacaaaaggcagccaatgcggataattattaggagctcaaccatc---attatctcacagcccaaaacagccaaccttccagcctttaatgcacttactaactggagtcggacagaggccccaaagtcaaagacatagcctttagtaaaaaaataagaaagctctttgaatttatgagtccatgtgccataagaacatccagaatgttctgacagagccttcaaactcctgttgccatcgtcacagtctattcttgtgggttacactctaatttagtaACTGGGGAAGCATCTCCCCGCATGGCTGCCACTCAGAGAAGCTGGGTTTAGACTCATCACTCCTTTCTTTGACATTAAACAAGGGTCGTCATTTATTTAAGAAGCTGCATTTCAGACTTTTGTGTATGGTAGAGTAA i macFas5.chr15 C 0 C 0 s papAnu2.chr15 94470661 2744 + 107442819 TAGTAGTCAGGGTTGTTAACAATGTCCTTGGAAAATTCCAGGCTTAGAGCCAATAAACACAAAGCCCAGAATGGGGCTCAGGCAGATtgcccaggaggctgcagagcCGCATTCGGGGTCGGTAGGCCACCATGCCTCTCTGTCACCCTCCA--TGGAGCTGCTGGAGCGACAGCTTTGGACCCAAGTGATGGACACtgtgaagagaaaacaaaaccttCCTGGATGGGGAAGGAGAATCAAAACACAAGCCC-AGAACTCCCCACTTTTAGAGCAGA-CCCCAAGCCAGGGTCCAAG-CCCCCT-GGATAAGGAGAGGAGTGGGAAATCAAACTCAGAAGGCAACCCCCTGCTCCCATGCCA-GAGGACCACACAGTCTTTTCCACTCCCAGGTTGACCAGTGTAGGGTTTCTTCCATGACAATTACCATCGGACC--ACCAGGAGTTTCCCCATGGGCTGAGGAAACCCAATGTTTAATACAGACCCTCAACtaca-cacaggaacagaaaacctggAATCAATCATTTGAGGAAACAGAAGTAgccccaaagaaaacaaaactagtaGGGCAAAGAGGAAAGGATTTTCATCATAAGTATAATGAATATCCTGAGAATAGTTTAAgtagatactgcatttttt-----aagtgttatgaaaaaaaa-attaacttattgAAAATGTTAC----tggaaagtcatttttttctt-------aatgttttaga-tggagtctcactttgtagctcagactggagtgcagtggcacgatcttggctcactgcaacctccgcctcccaggttcaagcaattctcctgcctcagcctcctgagtagctgggattacaggcacacaccatcatgc--ccagctaatttttg-ttttttcagtagatacagggtttcaccatgttggccaggctggtctcgaactcctgacctca--tgatccactcacctcggcctctcaaagtgctgggattacaggcgtgagccaccatgcctggccacagatGGAAAGTGTTGACTGTGAGTTGTCCAGCTTCTTGGTATGTTGAACAAAGAATttgacaaa---------acagaaaaagaagaaagaagcaatgAAAGTGTAGATTTACTTAAGCGAAAGTATGCTCCAGAGAGTGGTAGCAGGCTGGAGCAAGTGGCTCAAGAGCCCACGTTACAATGTTCTTTAAGGTTTTTATTAAGCTAAAAGAATTTGGTAACACCCCCTAG---------------GTGCCCTTTAGAGGCCTCTAATTGATTACACCCTTTGAAGGACTGGCCTACAGCCAATCAAAGGCTGAAGTGGAGACTTCGCCtgtgaccaatcagaggctgaagtgaagagTTGGCCTGcagccaatcagaggctgaagtggagactTCTGTCTGGTTATCACAGGAGTGAGGGTGTGGCCTGTAGGCTGCTTAACCTTGCCTAGAACTAGCTGCATCTGCTGTCCTTTTGCTTACGCCTTAACCCTTGGTTGCCCCAACTCCCTATTCTTCCACCTCAAAAATTAACAATgattgccaaaataaaaatagggcaGTAGACGAGGCCAGTAAATGAGGCCAGTAGATGTGCGATAACAAAATGGACAAAGCTGAAGATAAAATTTGTAAACTAAAAGATTAAGAAATTACCCCAGAATGCAATACAAACAAATATGAGAGACAGGGGAGATAGATTCAGAAATTCCAGTGGCCATCTAACAGGAATTCTGGAAGGAAAACATAACCTTCATAATTTGGGCAGGGAGGGAGTACTTTCTAAGAATGttacaaaatccaaaataaaagattGTCAAATGTGACATTATGAAAGTCAAAATGTTGGTActgcaaaaaagaaatgagcaaaactAAAACATAAGTGACAgtcttggagaaaatatttgcatcatTCATAACATGTGAAAACTTAACGTCAAAAATACAGAGAGAATTTCTGCAAATTTGct-------agagagagggaaggagtagaaaaatgcacaaagaaaATGATGTGAGAGAACAAGGAAAGGTTACTGGCTGGATTTCAGTGGAGGTCAGTGGCTGGGCCCGAGGTGTAGGTTcctccatgagggcagggtctGGTGTGGTGTGAATTTCCCACCGGTGCTGATGGAGGGAGCACCAGCCTGTCAAGTAGtggacagagaggaaaaaagaggggCCAGGCTTGAAAGCAATGAGCAGTCAGACC-CCCAAAATGGCTTTATTACAGTTCTAATgccagaaatttaa-ttttttctcaaacCTCAAAATAATCTCTCCTCAGCAAAGTAAATAAATGACATCATTGGGATGTTTTGAAAATCATATTCAAAAGCCACCATAATGCAGTAGTAAATACTTTCCAGAACAAAAGGCAGCCAATGCGGATAATTATTAGGAGCTCAACCATC---ATTATTTCACACCCCAAAACAGCCAACCTTCCAGCCTTTAGTGCACTTACTAATTGGAGTCGGACAGAGGCCCCATAGTCAAAGACATAGCCTttagt-aaaaaataagaaagctctTTGAATTTATGAGTCCATGCGCCATAAGAACATCCACAATGTTCTGACAGAGCCTTCAAACTCCTGTTGCCATCGTCACAGTCTATTCTTGTGGGTTACGCTCTAATTTAGTAACTGGGGAAACATCTCCCCGCATGGCTGCCACTCAGAG-AGCTGGGTTTAGACTCATCACTCCTTTCTTTGACATTAAACAAGGGTCGTCATTTATTTAAGAAGCTACATTTCAGACTTTTGTGTATGGTAGAGTAA i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 98682390 2752 + 108555830 TAGTAGTCAGGGTTGTTAACAATGTCCTTGGAAAATTCCAGGCTTAGAGCCAATAAACACAAAGCCCAGAATGGGGCTCAGGCAGATTGCCCAGGAGGCTGCAGAGCCGCATTCAGGGTCGGTGGGCCACCATGCCTCTCTGTCACCCTCCA--TGGAGCTGCTGGAGCGACAGCTTTGGACCCAAGTGATGGACACTCTGAAGAGAAAACAAAACCTTCCTGGGTGGGGAAGGAGAATCAAAACACAAGCCC-AGAACTCCCCACTTTTAGAGCAGA-CCCCAAGCCAGGGTCCAAG-CCCCCT-GGATAAGGAGAGGAGTGGGAAATCAAACTCAGAAGGCAACCCCCTGCTCCCATGCCA-GAGGACCACACAGTCTTTTCCACTCCCAGGTTGACCAGTGTAGGGTTTCTTCCATGACAATTACCATCGGACC--ACCAGGAGTTTTCCCATGGGCTGAGGAAACCCAATGTTTAATACAGACCCTCAACTACA-CACAAGAACAGAAAACCTGGAATCAATCATCTGAGGAAACAGAAGTAGCCCCAAAGAAAACAAAACTAGTAGGGCAAAGAGGAAAGGATTTTCATCATAAGTATAATGAATATCCTGAGAATAGTTTAAGTAGATACTGCATTTTTTTT-AACAGTGTTATGAAAAAAAAGATTAACTTATTGAAAATGTTACTGGATGGAAAGTCAAttttttttt-------aatgttttaga-tggagtctcactttgtagctcagactggagtgcagtggcacgatcttggctcactgcaacctccgcctcccaggttcaagcaattctcctgccttagcctcctgagtagctgggattacaggcacacaccatcatgc--ccagctaatttttg-tattttcagtagatacagagtttcaccatattggccaggctggtcttgaactcctgacctca--tgatccactcaccttggcctctcaaagtgctgggattacaggcgtgagccaccatgcctggccACAGATGGAAAGTGTTGACTGTGAGTtgtccagcttcttggtatgttgaacaaagaatttaacaaaacacacaaaacagaaaaagaagaaagaagcaatgaaagtgcagatttactgaagcgaaaatatgctccagagagtggtagcaggctggagcaagtggctcaagagcccagattacaatgttctttagggtttttattaagctaaaagaatttggtaacaccccctag---------------gtgccctttagaggcctctaactgataacaccctttgaaggactggcctacagccaatcaaaggctgaagtggagacttcacctgtgaccaatcagaggctg-agtgaagagttggcctgtagccaatcagaggctgaagtggagacttctgtctggttatcacaggagtgagggtgtggcctgtaggctgcttaaccttgcctagaactagctgcatctgctgtccttttgcttacgccttaacccttggttgccccaactccctattcttccacctcaAAAATTAACAATGATTGCCAAAATAAAAATAGGCCAGTAGACGAGGCCAGCAAATGAGGCCAGTAGATGTGCGatagcaaaatggacgaagctgaagataaaatttgtaaactaaaagattaagaaattaccccagaatgcaatacaaacaaatatgagagacaggggagatagatccagaaattccagtggccatctaacaggaattctagaaggaaaacataACCTTCATAATTTGGGCAGGGAGGGAGTACTTTCTAAGAATGTTACAGAATCCAAAATAAAAGATTGTCAAATGTGACATTATGAAAGTCAAAATGTTGGTACTGCAAAAAAGAAATGAGCAAAACTAAAACATAAGTGACAGTCTTGGAGAAAATATTTGCATCATTCATAACATGTGAAAACTTAACGTCAAAAATACAGAGAGAATTTCTGCAAATTTGCT-------AGAGAGAGGGAAGGAGTAGAAAAATGCACAAAGaaaatgatgtgagagaacaaggaaaggttactggctggatttcaatggaggtcagtggctgggcccgaggtgtaggttcctccatgagggcagggtctggtgtggtgtgaatctcccaccggtgctgaaggagggggcaccagcctgtccagtagtggatagagaggaagagagaggggccaggcttgaaagcaatgagcagtcagacc-cccaaaatggctttattacaGTTCTAATGCCAGCAAT-----TTTTTTCTCAAACCTCAAAATAAtctctcctcagcaaagtaaataaatgacatcattgggatgttttgaaaatcatattcaaaagccaccataatgcagtagtaaatactttccagaacaaaaggcagccaatgcggataattattaggagctcaaccatc---attatctcacagcccaaaacagccaaccttccagcctttagtgcacttactaactggagtcggacagaggccccaaagtcaaagacatagcctttagt-aaaaaataagaaagctctttgaatttatgagtccatgtgccataagaacatccagaatgttctgacagagccttcaaactcctgttgccatcgtcacagtctattcttgtgggttacgctctaatttagtaACTGGGGAAACATCTCCCCGCATGGCTGCCACTCAGAG-AGCTGGGTTTAGACTCATCACTCCTTTCTTTGACATTAAACAAGGGTCGTCATTTATTTAAGAAGCTGCATTTCAGACTTTTGTGTATG-----GTAA i chlSab2.chr12 C 0 C 0 s calJac3.chr1 77075527 2732 + 210400635 TGGTAGTCAGTACTCTTAACATTGTCCTTGGAAGATTCCAGGCTTAAAGCCAGTAAACACAAAGCCCAGGATGGAGC-CAGGGAGATTGCCCAAGTGGCTGCAGAGCTGCATTCAGGATCAGGGGGCTGCCATGCCTCTCTGCCACCCTGTATATGGAGCTCCTGGTGCGACAGCTTTGGACCCAAGTGATGGATGCTCTAAAGTAAGAACAAAACCTTCCTGGGTGGGGAAGGAGAATCAAAATACAAGCCCAAGAACTCTCCACTTTAAG-GCAGACCCCCAAGCCAGTATCCAAACCCCCCT-GGATAAGGAGA-GAGTAGGAAATCAAACTCAGAAGGCAAAGCTCTGCTCCCATGCCA-GAGGACCACACAGTCTTTTCCACTCCCAGCTTCACCAGTGTAGGGTTTCTT-TGTGACAATTGGCATAGGACC--ACCAGGAGTTTCCCCTTGGGCTGAGGAAATCCAGTGTTTAATACAGACCTTCAACTACA-CACAGGAGCAGAAAATCTGGAATCAATCATTTGAGGAAACAGAAGTAGCCCCAAAGAAAACGAAACTACTAGGGCAAAGAGGAAAGGATTTTCATCATAAGTATAATGAATATTCTGAGAATAGTTTAAATAGATGCTGCATTTTTTTTAAACAGTGTCATGAAAAA----ATAAACTTATTGAAAATGTTAC----TGGAATCCtttttttttttttttttttaacattttagacctgagtcttactctgttgcccagactggagtgcggtggcacaatctcggctcactgcaacctctgcctcccaggttcaagcaattctcctgcctcagtctcccgagtagctggaattacaggcatgcaccatcatgttgtatacaaacttttg-tatttttagtagagacagggtttttccatgttggctaggctggtctcaaactcctgacctcaggtgatccacctgtcttggcctcccaaagtgct---------ggtgtgagtcactgcacctggccACAGATATAAAGTGTTGACTGTGAGTtgttcagcttcctggcgtattgaataaagaattgaacaaaacacacaaaaca----aagaagaaagaagcaatgaaagtgcagatttactgaagggagtgtacactccaaagagtgggaatgggccagaacaagtggctcaagagcccagattacaatgttctttagggtttttattaagctaaaagaatttggt------ctttagaccaaatttgatggagtgccctttagagacctccaattggttacaccctatgaaggattgacccacggctaatcaaagactga--tggagacttggcctgtgaccaatcaga--ctgaagtcaagagttggcctgcagccagtcagaggctgaagtagagacttctgtctggttatcacggaagtgaggatgtgacctgaaggctgcttaaccttgcctcgaactagctgcacctgctgtccctttgcttatgccttaactcttggttaccccaattccctattcttctgcttcaAAAATT-ACAATGATTGCCaaaataaaaataggccagtagat-------gtaa------------------tgacagcagaatggacacagctgaagataaaatttgtaaactaaaagactaagaaattatcccagaatgcaatgcaaacaaatataaaagac--gggagataGATCCAGAAATTCCTGTGGCCATCTAATAGGAAttctagaaggaaaacaaaaccttcataatttgggtaggaagggagtagtttctaagaatgttgcaaaatccaaaataaaagattgtcaaatatgatattataaaagtcaaaatgttggtactgcaaaaaataaatgagcaaaactaaaacataagtgacagtcttggagaaaatatttgcattattcataaca--tgaaaacttaacgtcaaaaatacagagagaatttctgcaaatctgct----agaaaagagagggaaggagtagaaaaatgcacaaaGaaaatgatgtgagagaacaaggaaaggattctggctgggttttgatgga-gtcagtggctgggcctgaggtgtagcttcccccatgagggcagggtctggtgtggtgtgaatctcccacccgtgctgaagaagggagcaccagcttgtctagtggtgtgcagagaggaaaatagacgggccaggcttgaaagcaatgagcagtcagacCACACAAACAGGCTTTATTATAgctctaatgccagaaatttaatttttttctcaaacctcaaaataatctcttatcagaaaagtaaatacatgacattattgggatgttttgaaaatcatatttgaaagccaccataaagcagtagtaaacactttccagaacaaaaggcagccaaggcggataattattaagagctcagtcatc---attatctcacatgccaaaatagccagccttccagcctttagtgcgcttactgactagagtctaacaaaggccacgaagacaaagaaataggctttagt-aaaaaataagaaagttctttgaatttatgagtccacgtgcaataagagcatccagaatgttctgacagagccttcaaactcctactgccatcatcacagtctattcttgtgggtaactttctaatttagtaACTGGGGAAACATCT--CTGCCTGGCTGCCACTCAGAG-AGCTAGGTTTAGACTCATCACTCCTTTTTTTGACATTAAACAAGGGTCATCATTTATTTAAGAAGTTTTATTTCAGACTTTTGTGTATGGCAGAATAA i calJac3.chr1 I 2998 I 10172 a score=719581.000000 s hg38.chr9_GL383542v1_alt 7599 289 + 60032 AGGTGTTTCTGCACCCATATCCCCTTGATAATTAATGATGAGCTAGCAGAATGGGAGAGAAAAGAAGGAGAAGGAGACAGAAACACAGACTGTTTAAATGAAGCTAAGAGATACCTGTTCATTGCACATGAACATTTGAGGACTGGGAGCTGCCTTAGCAGAATGTGTAGAATGAAAACTAGATGCCTACCAAGGACTGATTCATCCTACAGTACTTGGAAATGCTCAGGGATTGAAGTCATGGGTACCTTGAAGGCAGACATAAGGTGTGGACCAGAACATGATGGGA s panTro4.chr9 86951007 289 + 137840987 AGGTGTTTCTGCACCCATATCCCCTTGATAATTAATGATGAGCTAGCAGAATGGGAGAGAAAAGAAGGAGAAGGAGACAGAAACACAGACTTTTTAAATGAAGCTAAGAGATACCTGTTCATTGCACATGAACATTTGAGGACTGGGAACTGCCTTAGCAGAATGTGTAGAATGAAAACTAGATGCCTACCAAGGACTGGTTCATCCTACAGAACTTGGAAATGCTCAGGGATTGAAGTCATGGGTACCTTGAAGGCAGACATAAGGTGTGGACCAGAACATGATGGGA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83580776 289 + 135191526 AGGTGTTTCTGCACCCATATCCCCTTGATAATTAATGATGAGCTAGCAGAATGGGAGAGAAAAGAAGGAGAAGGAGACAGAAACACAGACTTTTTAAATGAAGCTAAGAGATACCTGTTCCTTGCACATGAACATTGGAGGACTGGGAACTGCCTTAGCAGAATCTGTAGAATGAAAACTAGATGCCTACCAAGGACTGATTCATCCTACAGAACTTGGAAATGCTCAGGGATTGAAGACATGGGTACCTTGAAGGCAGACATAAGGTGTGGACCAGAACATGATGGCA i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76100403 289 - 122973662 AGGCGTTTCTGCACCCATATCCCCTTGATAATTAATGATGAGCTaggagaatgggagagaaaagaaggagaaggagaCAGAAACACAGACTTTTTAAATGAAGCTAAGAGATACCTGTTCATTGCACGTGAACATTTGAGGACTGGGAACTGCCTTAGCAGAATATGTAGGATGAAAACTAGATGCCTACCAAGGACTGATTCATCCTACAGAACTTGGAAATGCTCAGGGATTGAAGACATGGGTACCTTGAAGGCAGACATAAGGTGCGGACCAGAACATGGTGGGA i nomLeu3.chr1a C 0 I 1315 s rheMac3.chr15 97539955 289 + 112192347 AGGTGTTTGTGCACCCATACCCCCTTGATAATTAATGACGAGCTAGGAGAATGGGAGAGAAAAGAAGAAGAAGGAGACAGAAACACAGACTTTTTAAATGAAGCCAAGAGATACCTGTTCATTGCACACAAACATTTGAGGACTGGGAACTGCCTTAGCCGAATGTGTAGAATGAAAACCAGATGCCTACCAAGGACTGATTCATCCTGCAGAACTTGGAAATGCTCAGGGATTGAAGACACGGGTACCTTGAAGGCAGACATAAGGTGTGGACCAGAACATGGTGGGA i rheMac3.chr15 C 0 C 0 s macFas5.chr15 98760005 289 + 112612857 AGGTGTTTGTGCACCCATACCCCCTTGATAATTAATGACGAGCTAGGAGAATGGGAGagaaaagaagaagaaggagacagaaACACAGACTTTTTAAATGAAGCCAAGAGATACCTGTTCATTGCACACAAACATTTGAGGACTGGGAACTGCCTTAGCCGAATGTGTAGAATGAAAACTAGATGCCTACCAAGGACTGATTCATCCTGCAGAACTTGGAAATGCTCAGGGATTGAAGACACGGGTACCTTGAAGGCAGACATAAGGTGTGGACCAGAACATGGTGGGA i macFas5.chr15 C 0 C 0 s papAnu2.chr15 94473405 289 + 107442819 AGGTGTTTGTGCACCCATATCCCCTTGATAATTAATGATGAGCTAGGAGAatgggagagaaaagaagaagaaggagacagaaacacagaCTTTTTAAATGAAGCCAAGAGATACCTGTTCATTGCACACGAACATTTGAGGACTGGGAACTGCCTTAGCAGAATGTGTAGAATGAAAACTAGATGCCTACCAAGGACTGATTCATCCTGCAGAACTTGGAAATGCTCAGGGATTGAAGACATGGGTACCTTGAAGGCAGACATAAGGTGTGGACCAGAACATGGTGGGA i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 98685142 287 + 108555830 AGGTGTTTGTGCACCCATATCCCCTTGATAATTAATGATGAGCTAGGAGAATGGGAGagaaaagaagaagaaggagacagaaACAC--ACTTTTTAAATGAAGCCAAGAGATACCTGTTCATTGCACACGAACATTTGAGGACTGGGAACTGCCTTAGCAGAATGTGTAGAATGAAAACTAGATGCCTACCAAGGACTGATTCATCCTGCAGAACTTGGAAATGCTCAGGGATTGAAGACATGGGTACCTTGAAGGCAGACATAAGGTGTGGACCAGAACATGGTGGGA i chlSab2.chr12 C 0 C 0 e calJac3.chr1 77078259 10172 + 210400635 I a score=866544.000000 s hg38.chr9_GL383542v1_alt 7888 535 + 60032 AAGATAAAAGTCTGCATAAAAACAACTAGGAaccctggaccagcagctggctacacatagatgaatgagccgaggctggctgacaccagccaaagtgcacagcagagcctatcctaaattgctgacccacaggatggtaagctaaCTAAGTTGTGttttctttatttttat---tta-ttat--gtttttgtttttgtttttgtttttgttttttttgagatggagttttgctcttgtcgcccaggctgaagtgcaatggcatgagctcggttcactgcaacctccacttcctaggttcaagcggttctcctgcctcagtctcctgagtagctgggattataggaacccaccaccatgcctgactaattttttgtatttttagtagaggcagggtttcaccacgttggccaggctggtctcgaactcctgacctcaggttatccacccacctcggcctcccaaagtgctggcattacaggcgtgagccactgcgcccagccTCCCTCTCCAGACTCT--ATTTCCCCTCTGCCACCTGGATAC s panTro4.chr9 86951296 524 + 137840987 AAGATAAAAGTCTGCATAGAAACAACTAGGAaccctggaccagcagctggctacacatagatgaatgagccgaggctggctgacaccagccaaagtgcacagcagagcctatcctaaattgctgacccacaggatggtaagctaactaagttgtgttttaTTTATTTTTAT---TTA-TTAT--Gtttttgtttttgttttt-------------ttgagatggagttttgctcttgtcgcccaggctgaagtgcaatggcatgagctcggttcactgcaacctccacttcctaggttcaagcggttctcctgcctcagtctcctgagtagctgggattataggaacccaccaccatgcctgactaattttttgtatttttagcagaggcagggtttcaccacgttggccaggctggtctcgaactcctgacctcaggttatccacccacctcggcctcccaaagtgctgggattacaggtgtgagccactgtgcccagccTCCCTCTCCAGACTCTTTATTTCCCCTCTGCCACCTGGATAC i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83581065 523 + 135191526 AAGATAAAAGTCTGCATAAAAACAACTAGGAaccctggaccagcagctggctacacatagatgaatgagccgaggctggctgacaccagccaaagtgcacagcagagcctatcctaaattgctgacccacaggatgaaaagctaactaagttgtgttttCTTTATTTTTAT---TTA-TTAT--Gtttttgtttttgttttt------------tttcagacagagttttgctcttgttgcccaggctgaagtgcaatggcatgatctcggttcactgcaacctccacttcctaggttcaagcgaatctcctgcctcagtctcctgagtagctgggattacaggaacccaccaccatgcctgactaattttttgtatttttagtagaggcagggtttcaccacattggccaggctggtctcgaactcctgacctcaggttatccacccacctcggcctcccaaagtgctgggattacaggcgtgaaccactgtgcccggccTTCCTCTCCAGACTCT--GTTTCCCCTCTGCCACCTGGATAC i ponAbe2.chr9 C 0 C 0 s rheMac3.chr15 97540244 519 + 112192347 AATATAAAAGTCTGCATAAAAACAACCAGGAAGCCTGgaccagcagctggctacgcacacatgaatgagccaaggctggctgacaccagccaaagtgcagagcagagcctatcctaaattgctgacccacaggatggtaagctaaC-----TGTGTTTTCTttatttttat---tta-ttatt-attattattattattatt------------attgagatgaagttttgctcttgttacccagactgaagtgcaatggcatgatctcggttcactgcagcctccacttcctacgttccagcgattctcctgcctcagcctcctgagtggctggtattacaggaacccgccaccatgcccagctaattttttgtgtttttggtagagacagggtttcaccacgttggccaggctggtatcaaactcctgacctcaggtgatccacccatctcgacctcccaaagtgctgggattacaggcgtgagccactatgtccggccTCCCTCTCCAGACTCT--ATTTCCCCTCTGCCACCTGGATAC i rheMac3.chr15 C 0 C 0 s macFas5.chr15 98760294 526 + 112612857 AATATAAAAGTCTGCATAAAAACAACCAGGAAGCCTGgaccagcagctggctacgcacacatgaatgagccaaggctggctgacaccagccaaagtgcagagcagagcctatcctaaattgctgacccacaggatggtaagctaaCCAAG-TGTGTTTTCTttatttttatttatta-ttatt-attattattattattatt------------attgagatgaagttttgctcttgtcacccagactgaagtgcaatggcatgatctcggttcactgcaacctccacttcctaagttccagcgattctcctgcctcagcctcctgagtggctggtattacaggaacccgccaccatgcccagctaattttttgtgtttttggtagagacagggtttcaccacgttggccaggctggtatcaaactcctgacctcaggtgatccacccatctcgacctcccaaagtgctgggattacaggcgtgagccactatgtccggccTCCCTCTCCAGACTCT--ATTTCCCCTCTGCCACCTGGATAC i macFas5.chr15 C 0 C 0 s papAnu2.chr15 94473694 494 + 107442819 AACATAAAAGTCTGCATAAAAACAACCAGGAAGCCTGGACCAGCAGCTGGCTACGCACACATGAATGAGCCGAGGCTGGCTGACACCAGCCAAAGTGCAGAGCAGAGCCTA--------------------------TAAGCTAACTaag-tgtgttttctttatttttat-------ttatt-gttattattattattatt------------attgagatgaagttttgctcttgtcacccagactgaagtgcaatggcatgatctcagttcactgcaacctccacttcctaagttcaagcgattctcctgcctcagcctcctgagtagctggtattacagtaacccgccaccatgcccagctaattttttgtgtttttggtagagacagggtttcaccacgttggccaggctggtatcaaactcctgacctcaggtgatccacccatctcgacctcccaaagtgctgggattacaggcgtgagccactatgtccggcCTCCCTCTCCAGACTCT--ATTTCCCCTCTGCCACCTGGAtac i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 98685429 499 + 108555830 AACATAAAAGTCTGCATAAAAACAACCAGGAAGCCTGGACCAGCAGCTGGCTACGCATACATGAATGAGCTGAGGCTGGCTGACAGCAGCCAAAGTGCAGAGCAGAGCCTA--------------------------TAAGCTAACTAAG-TGTGTtttctttatttttat---ttatttattaataataataattattatt------------attgagatgaagttttgctcttgtcacccagactgaagtgcaatggcatgatctcagttcactgcaacctccacttcctaagttcaagcaattctcctgcctcagcctcctgagtagctggtattacagtaacccaccaccatgcccagctaattttttgtgtttttggtagagacagggtttcaccacgttggccaggctggtatcaaactcctgacctcaggtgatccacccacctcggcctcccaaagtgctgggatttcaggcgtgagccactgtgtccagccTCACTCTCCAGACTCT--ATTTCCCCTCTGCCACCTGGATAC i chlSab2.chr12 C 0 C 0 e calJac3.chr1 77078259 10172 + 210400635 I e nomLeu3.chr1a 76100692 1315 - 122973662 I a score=190014.000000 s hg38.chr9_GL383542v1_alt 8423 87 + 60032 caggagaattgcttgaacccgggaggtggaggttgcagtgagccaagatcacgccactgcactccagcctgcatgacagagtgagac s panTro4.chr9 86951820 87 + 137840987 caggagaatcacttgaacccgggaggtggaggttgcagtgagccaagatcacgccactgcactccagtgtgtatgagagagtgagac i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83581588 87 + 135191526 caggagaatcgcttgaacccgggagatggcggttgcagtgagccgagatcacaccactgcactctagcctgcgtgacatagtgagac i ponAbe2.chr9 C 0 C 0 s rheMac3.chr15 97540763 87 + 112192347 caggagaattgcttgaacccgggaggtggaggttcaagtgagctgagatcgcaccactgcactccagcctgggtgacagagtgagac i rheMac3.chr15 C 0 I 43 s macFas5.chr15 98760820 87 + 112612857 caggagaattgcttgaacccgggaggtggaggttcaagtgagctgagatcgcaccactgcactccagccttggtgacagagtgagac i macFas5.chr15 C 0 I 43 s papAnu2.chr15 94474188 87 + 107442819 caggagaattgcttgaacccgggaggtggaggttcaagtgagctgagatcgcaccactgcactccagcctgggtgacagagtgagac i papAnu2.chr15 C 0 I 33 s chlSab2.chr12 98685928 87 + 108555830 caggagaattgcttgaacccgggaggtggaggttcaagtgaactgagatcgcaccactgcactccagcctgggtgacagagtgagat i chlSab2.chr12 C 0 I 38 s calJac3.chr1 77088431 87 + 210400635 caggacaatcgcttgaacctgggaggcagaggttgcagtgagccaagattgtgccattatactccagcctgggtgacagagcgagac i calJac3.chr1 I 10172 I 4 e nomLeu3.chr1a 76100692 1315 - 122973662 I a score=3466.000000 s hg38.chr9_GL383542v1_alt 8510 41 + 60032 tctgaaa---gaaggaaaggggagggaagggaaggg-------------------------aaggggag s panTro4.chr9 86951907 66 + 137840987 tATGAAA---GAaggaaaggggagggaagggaaggggagggaaggaaaggggaggggagggaaggggag i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83581675 41 + 135191526 tctgaaa---gaaggaaaGGTGagggaagggaaggg-------------------------aaggggag i ponAbe2.chr9 C 0 C 0 s calJac3.chr1 77088522 35 + 210400635 tctcaaaattaattaattaattaattaaAAAAAGA---------------------------------- i calJac3.chr1 I 4 C 0 e chlSab2.chr12 98686015 38 + 108555830 I e papAnu2.chr15 94474275 33 + 107442819 I e macFas5.chr15 98760907 43 + 112612857 I e rheMac3.chr15 97540850 43 + 112192347 I e nomLeu3.chr1a 76100692 1315 - 122973662 I a score=2553.000000 s hg38.chr9_GL383542v1_alt 8551 5 + 60032 gggag s panTro4.chr9 86951973 5 + 137840987 ggaag i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83581716 5 + 135191526 gggag i ponAbe2.chr9 C 0 I 322 s nomLeu3.chr1a 76102007 5 - 122973662 gggag i nomLeu3.chr1a I 1315 C 0 e calJac3.chr1 77088557 0 + 210400635 C e chlSab2.chr12 98686015 38 + 108555830 I e papAnu2.chr15 94474275 33 + 107442819 I e macFas5.chr15 98760907 43 + 112612857 I e rheMac3.chr15 97540850 43 + 112192347 I a score=5865.000000 s hg38.chr9_GL383542v1_alt 8556 40 + 60032 gggaggggagaggaggggaggggagggagggaggggaggt s panTro4.chr9 86951978 40 + 137840987 gggaggggagaggaggggagcggagggagggaggggaggg i panTro4.chr9 C 0 C 0 s nomLeu3.chr1a 76102012 28 - 122973662 gggaggggatgggcggggagggaaggga------------ i nomLeu3.chr1a C 0 C 0 e calJac3.chr1 77088557 0 + 210400635 C e chlSab2.chr12 98686015 38 + 108555830 I e papAnu2.chr15 94474275 33 + 107442819 I e macFas5.chr15 98760907 43 + 112612857 I e rheMac3.chr15 97540850 43 + 112192347 I e ponAbe2.chr9 83581721 322 + 135191526 I a score=2763.000000 s hg38.chr9_GL383542v1_alt 8596 6 + 60032 gagggg s panTro4.chr9 86952018 6 + 137840987 gagggg i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83582043 6 + 135191526 gagggg i ponAbe2.chr9 I 322 C 0 s nomLeu3.chr1a 76102040 5 - 122973662 -aggga i nomLeu3.chr1a C 0 C 0 e calJac3.chr1 77088557 0 + 210400635 C e chlSab2.chr12 98686015 38 + 108555830 I e papAnu2.chr15 94474275 33 + 107442819 I e macFas5.chr15 98760907 43 + 112612857 I e rheMac3.chr15 97540850 43 + 112192347 I a score=3025458.000000 s hg38.chr9_GL383542v1_alt 8602 1015 + 60032 aAACTGTTGGAAGCTATTAATTGTAATAGTTATAAGAGTAGAAATGTCGAGTAGAACACACTATTAAAGCTATGAATATGAAAAAAAAGAGTTTTGAATTGTTTTGTATGTTCTCTAACTGATCTATTTCTTTGGATAATCTAGTAAT----TTCTTCCAGATGTCTTTTAGT---AACAACTTGTTGGCACTGGCAAGCGAAAGTGATAGCCATTTCTTGTTGTACTTCATGGCTGCAGTTTGCATTCCTGAAGCTAGCAATTATCTGAAGTTTTTCAGAAGCATAGTTCACAAACTGTTGTTTAAAGCCTCTTTCCTTGGCACAAGTGGTCCAGGACAGCCTTCCATAAAGATACCAAACTCCATACATACATAATGAAACATATACGAATTGCCAGCCTATAGTTTTCCAAATTACTCCTCCAACAGTGATGTCCGTAGAAGTCCTAGATGTAAGAGAAGCTAATCCT------GTT--ATTAAGGTAACCATGAGTTCTTTGTGTGATGCATTATCTGGTGTTGCTGGGTTGATAGAAGCAGTGGGAGTACAGGCTAAAGAGCTAGGGAAAGTTAGGCTCTGACAATCCTAGGAGCACCCTCTGAGCATTTGTAGGGCCCAGGAATCAATGCACAAGTGAAGACCAGCCCAGGGAAAAATGGAATACAATACCCTCTTGAAAATCTGGTCATAACTTGTGGCAATATAGGTCATGACTGAGATCAAATTTCTTGCAAGGGATTAGTGTATGCAGTTTATTCTATATAT-AGCTGAAAGTAATGGTTTCAAATTTTTAATAATTTCTTGCTTGGATTAAACATTGAGGCATTGTCTTAATTGGTGCATCAATCAGCCATATTTCTTCTGATACCGTCTTCTAAGTGCTAATTTAAGTCACCTTTACATACTTTCAATACACGTGGAGTAGGATGAAACT--GAATAAAATTCATCAACCAAAACAGACAGTCAACAAATTTCATCTGTCTTTGCACGTGAAACCTTGTTTGCCACTTCCTTGGTAACCTC s panTro4.chr9 86952024 1016 + 137840987 aAACTGTTGGAAGCTATTAATTGTAATAGTTATAAGAGTAGAAATGTCGAGTAGAAGACACTATTAAAGCTATGGATATGAAAAAAAAGAGTTTTGAATTGTTTTGTATGTTCTCTAACTGATCTATTTCTTTGGATAATCTAGTAAT----TTCTTCCAGATGTCTTTTAGT---AACAACTTGTTGGCACTGGCAAGCAAAAGTGATAGCCATTTCTTGTTGTACTTCATGGCTGCAGTTTGCATTCCTGAAGCTAGCAATTATCTGAAGTTTTTCAGAAGCATAGTTCACAAACTGTTGTTTAAAGCCTCTTTCCTTGGCACAAGTGGTCCAGGACAGCCTTCCATAAAGATACCAAACTCCATACATACATAATGAAACATATACGAATTGCCAGCCTATAGTTTTCCAAATTACTCCTCCAACAGTGATGTCCATAGAAGTCCTAGATGTAAGAGAAGCTAATCCT------GTT--ATTAAGGTAACCATGAGTTCTTTGTGTGATGCATTATCTGGTGTTGCTGGGTTGATAGAAGCAGTGGGAGTACAGGCTAAAGAGCTAGGGAAAGTTAGGCTCTGACAATCCTAGGAGCACCCTCTGAGCATTTGTAGGGCCCAGGAATCAATGCACAAGTGAAGACCAGCCCAGGGAAAAATGGAATACAATACCCTTTTGAAAATCTGGTCATAACTTGTGGCAATATAGGTCATGACTGAGATCAAATTTCTTGCAAGGGATTAGTGTATGCAGTTTATTCTATATATCAGCTGAAAGTAATGGTTTCAAACTTTTAATAATTTCTTGCTTGGATTAAACATTGAGGCATTGTCTTAATTGGTGCATCAATCAGCCATATTTCTTCTGATACCGTCTTCTAAGTGCTAATTTAAGTCACCTTTACATACTTTCAATACACGTGGAGTAGGATGAAACT--GAATAAAATTCATCAACCAAAACAGACAGTCAACAAATTTCATCTGTCTTTGCACGTGAAACCTTGTTTGCCACTTCCTTGGTAACCTC i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83582049 1025 + 135191526 AAACTGTTGGAAGCTGTTAAGTGTAATAGTTATAAGAGTAGAAATGTCGAGTAGAACACTCTATTAAAGCTATGAATATGAAAAAAAA-AGTTTTGAATTGTTTTGTATGTTCTCTAACTGATCTATTTCTTTGGATAATCTAGTAAT----TTCTTCCAGATGTCTTTGAGT---AACAACTTGTTGGCACTGGCAAGCAAAAGTGATAGCCATTTCTTGTTGTACTTCATGGCTGCAGTTTGTACTCCTGAAGCTAGCAATTATCTGAAGTTTTTCAGAAGCATAGTTCACAAACTGCTGTTTAAAGCCTCTTTCTTTGGCACAAGTGGTCCAGGACAGCCTTTCATAAAGATACCAAACTCCATACATACATAATGAAACATATACGAATTGCCAGCCTATAGTTTTCCAAATTACTCCTCCAACAGTGATGTCCATAGAAGTCCTAGATGTAAGAGAAGCTAATCCTTACATGGTTACATTAAGGTAACCATGAGTTCTTTGTGTGATGCATTATCTGGTGTTGCTGGGTTGATAGAAGCAGTGGGAGTACAGGCTAAAGAGCTAGGGAAAGTTAGGCTCTGACAATCCTAGGAGCACCCTCTGAGCATTTGTAGGGCCCAGGAATCAATGCACAAGTGAAGACCAGCCCAGGGAAAAATGGAATACAATACCCTCTTGAAAATCTGGTCATAACCTGTGGCAATATAAGTCATGACTGAGATCAAATTTCTTGCAAGGGATCAGTGTATGCAGTTTATTCTATATATCAGCTGAAAGTAATGGTTTCAAATTTTTAATAATTTCTTGCTTGGATTAAACATTGAGGCATTGTCTTAACTGGTGCATCAATCAGCCATATTTCTTCTGATGCCATCTTCTAAGTGCTAATTTAAGTCACCTTTACATACTTTCAATACACGTGGAGTAGGATGAAACTCGGAATAAAATTCATCAACCAAAACAGACAGTCAACAAATTTCATCTGTCTTTGCACGTGAAACCTTGTTTGCCACTTCCTTGGTAACCTC i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76102045 1011 - 122973662 aggCTGTTGGAAGCTATTAAGTGTAATAGTTATGAGAGTAGATATGTCGAGTAGAACACACTATTAAAGCTACGAATATGAAAAAA---AGATTTGAATTGTTTTGTATGTTCTCTAACTGATCTATTTCTTTGGATAATCTAGTAAT----TTCTTCCAGATGTCTTTGAGT---AACAACTTGTTGGCGCTGGCAAGCAAAAGTGATAGCCATTTCTTGTTGTACTTCATGGCTGCAGTTTACACTCTAGAAGCTAGCAATTATCTGAAGTTTTTCAGATGCATAGTTCGCAAACTGCTGTTTAAAGCCTCTTTCCTCGGCACAAGCGGTCCAGGATAGCCTTTCATAAAGATACCAAACTCCATACATACATAATGAAACATATACGAATTGCCAGCTTATAGTTTTCCAAATTACTCCTCCAACAGTGATGTCCATAGAAGTCCTAAATGTAAGAGAAGCTAATCCA------GTT--ATTAAGGTAACCATGAGTTCTTTGTGTGATGCATTATCTGGTGTTGCTGGGTTGATAGAAGCAGTGGGAGTACAGACTAAAGAGCTAGGGAAAGTTAGCCTCTGACAATCCTAGGAGCACCCTCTGAGCATTTGTAGGGCCCAGGAATCAATGCACAAGTGAAGACCAGCCCAGGGAAAAATGGAATACAATACCCTCTTGAAAATCTGGTCATAACTTGTGGCAATACAGATCATAACTGAGATCAAATTTCTTGCAAGGGATCAGTGTATGCAGCTTATTCTATATATCAGCTGAAAGTAATGGTTTCAAATTTTTAATAATTTCTTGCTTGGATTAAACACTGAGGCATTGTCTTAAC-GGTGCATCAATCAGCCATATTTCT--TGATACCGTCTTCTAAGTGCTAATCTAAGTCACCTTTATATACTTTCAATACACGTGGAGTAGGATGAAACTCTGAACAAAATTCATCAACCAAAACAGACAGTCAACAAATTTTATCTG-CTTTGCACGTGAAACCTTGTTTGCTACTTCCATGGTAACCTC i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 97540893 1016 + 112192347 aaaCTGTTGGAAGCTATTAAGTGCAATAGTTATGAAAGTAGAAATGTCGAGTAGAACACACTATTAAAGCTATGAGTATGAAAAAAAG-AGCTTTGAATTGTTTTGTATGTTCTCTAACTGATCTATTTCTTTGGATAATCTAGTAAT-TTCTTCTTCCAGATATCCTTGAGTAACAACAACTTGTTGCCACTGGCAAGCAAAAGTGACAGCCATTTCTTGTCGTACTTTGTGGCTGCAGTTTGCACTCCTGAAGCTAGCAAACATCTGAAGTTTCTCGGATGCGCAGTTCACAAACCGCTGTTTAAAGCCTCTTTCCTTGGCACAGGTGCTCCAGGATAGCCTTTCATAAAGATACCAAACTCCATACATACATAATGAAACATATATGAATTGCCAGCCTACAGTTTTCCAAATTACTCCTCCAACAGTGATGCCCATAGAAGTCCTAGATGTAAGAGAAGCTAATCCT------GTT--ATGAAGGTAACCATGAGTTCTGTGTGTGATGCATTATCTGGTGTTGCTGGGTTGATAGAAGCAGTGGGAGTACAGGCTAAAGAGCTGGGGAAAGTGAGGCTCTGACAATCCCAGGAGCGCCCTCTGAGCATTTGT-------AGGAATGAATGCACAAGTGAAGACCAGCCCAGGGAAAAATGGAATACACTGTCCTCTTGAAAATCCGGTCATAACTTGTGGCAATAGAGGTCATAACTGAGGTCAAATTTCTTGCAAGGGATCCGTGTATGCAGTTTATTCTATATGTCAGCTGAAAATAATGGTTTCAAATTTTTAATAATTTCTTGCTAGGATTAAATACTGAGGCATTGTCTTCACTGGTGCATCAATCAACCATATTTCTTCTGATACCATCTTCTAAGTGCTAATTTAAGTCACCTTTATATACTTTCAATCCACTTAGAGTAGGATGAAACTCTGAACAAAATTCATCAACCAAAACAGACAGTCAACAAATCTCATCTGTCCTTGCACATGAAACCTTGTTTGCCATTTCCTTGGTAACCTC i rheMac3.chr15 I 43 C 0 s macFas5.chr15 98760950 1016 + 112612857 aaaCTGTTGGAAGCTATTAAGTGCAATAGTTATGAAAGTAGAAATGTCGAGTAGAACACACTATTAAAGCTATGAATAGGAAAAAAAG-AGCTTTGAATTGTTTTGTATGTTCTCTAACTGATCTATTTCTTTGGATAATCTAGTAAT-TTCTTCTTCCAGATATCCTTGAGTAACAACAACTTGTTGCCACTGGCAAGCAAAAGTGACAGCCATTTCTTGTCGTACTTTGTGGCTGCAGTTTGCACTCCTGAAGCTAGCAAACATCTGAAGTTTCTCAGATGCGTAGTTCACAAACCGCTGTTTAAAGCCTCTTTCCTTGGCACAGGTGCTCCAGGATAGCCTTTCATAAAGATACCAAACTCCATACATACATAATGAAACATATATGAATTGCCAGCCTACAGTTTTCCAAATTACTCCTCCAACAGTGATGCCCATAGAAGTCCTAGATGTAAGAGAAGCTAATCCT------GTT--ATGAAGGTAACCATGAGTTCTGTGTGTGATGCATTATCTGGTGTTGCTGGGTTGATAGAAGCAGTGGGAGTACAGGCTAAAGAGCTGGGGAAAGTGAGGCTCTGACAATCCCAGGAGCGCCCTCTGAGCATTTGT-------AGGAATGAATGCACAAGTGAAGACCAGCCCAGGGAAAAATGGAATACACTGTCCTCTTGAAAATCCGGTCATAACTTGTGGCAATAGAGGTCATAACTGAGGTCAAATTTCTTGGAAGGGATCCGTGTATGCAGTTTATTCTATATGTCAGCTGAAAATAATGGTTTCAAATTTTTAATAATTTCTTGCTAGGATTAAATACTGAGGCATTGTCTTCACTGGTGCATCAATCAACCATATTTCTTCTGATACCATCTTCTAAGTGCTAATTTAAGTCACCTTTATATACTTTCAATCCACTTAGAGTAGGATGAAACTCTGAACAAAATTCATCAACCAAAACAGACAGTCAACAAATCTCATCTGTCCTTGCACATGAAACCTTGTTTGCCATTTCCTTGGTAACCTC i macFas5.chr15 I 43 C 0 s papAnu2.chr15 94474308 1016 + 107442819 aaactgttgGAAGCTATTAAGTGCAATAGTTATGAAAGTAGAAATGTCGAGTAGAACACACTATTAAAGCtatgaatatgaaaaaaag-agCTTTGAATTGTTTTGTATGTTCTCTAACTGATCTATTTCTTTGGATAATCTAGtaat-ttcttcttccagatatCCTTGAGTAACAACAACTTGTTGCCACTGGCAAGCAAAAGTGATAGCCATTTCTTGTTGTACTTTGTGGCTGCAGTTTGCACTCCTGAAGCTAGCAAACATCTGAAGTTTCTCAGATGCGTAGTTCACAAACCGCTGTTTAAAGCCTCTTTCCTTGGCACAGGTGCTCCAGGATAGCCTTTCATAAAGATACCAAACTCCATACATACATAATGAAACATATATGAATTGCCAGCCTACAGTTTTCCAAATTACTCCTCCAACAGTGATGCCCATAGAAGTCCTAGATGTAAGAGAAGCTAATCCT------GTT--ATGAAGGTAACCATGAGTTCTGTGTGTGATGCATTATCTGGTGTTGCTGGGTTGATAGAAGCAGTGGGAGTACAGGCTAAAGAGCTGGGGAAAGTGAGGCTCTGACAATCCCAGGAGCGCCCTCTGAGCATTTGT-------AGGAATCAATGCACAAGTGAAGACCAGCCCAGGGAAAAATGGAATACACTGTCCTCTTGAAAATCCGGTCATAACTTGTGGCAATAGAGCTCATAACTGAGGTCAAATTTCTTGCAAGGGATCAGTGTATGCAGTTTATTCTATATGTCAGCTGAAAATAAtggtttcaaatttttaataatttcttgcTAGGATTAAACACTGAGGCATTGTCTTCACTGGTGCATCAATCAACCATATTTCTTCTGATACCATCTTCTAAGTGCTAATTTAAGTCACCTTTATATACTTTCAATCCACTTAGAGTAGGATGAAACTCTGAACAAAATTCATCAACCAAAACAGACAGTCAACAAATCTCATCTGTCCTTGCACATGAAACCTTGTTTGCCATTTCCTTGGTAACctc i papAnu2.chr15 I 33 C 0 s chlSab2.chr12 98686053 1012 + 108555830 aaaCTGTTGGAAGCTATTAAGTGCAATAGTTATGAAAGTAGAAATGTCGGGTAGAACACACTATTAAAACTATGAATATGAAAAAAAG-AGCTTTGAATTATTTTGTATGTTCTCTAACTGATCTATTTCTTTGGATAATCTAGTAAT-TTCTTCTTCCAGATATCTTTGAGTAACAACAACTTGTTGCCACTGGCAAGCAAAAGTGATAGCCATTTCTTGTTGTACTTTGTGGCTGCAGTTTGCACTCCTGAAGCTAGCAAACATCTGAAGTTTCTCAGAGGCGTAGTTCACAAACCGCTGTTTAAAGCCTCTTTCCTTGGCACAGGTGCTCCAGGACAGCCTTTCATAAAGATACCAAACTCCATACATACATAATGAAACATATATGAATTGCCAGCCTACAGTTTTCCAAATTACTCCTCCAACAGTGATGCCCATAGAAGTCCTAGATGTAAGAGAAGCTAATCCT------GTT--ATGAAGGTAACCATGAGTTCTGTGTGTGATGCGTTATCTGGTGTTGCTGGGTTGATAGAAGCAGTGGGAGTACAGGCTAAAGAGCTAGGGAAAGTTAGGCTCTGACAATCCCAGGAGCGCCCTCTGAGCATTTGT-------AGGAATCAATGCACAAGTGAAGACCAGCCCAGGGAAAAATGGAATACACTGTCCTCTTGAAAATCCAGTCATAACTTGTGGCAATAGAGGTCATAACTGAGATCAAATTTCTTGCAAGGGATCAGTGTATGCAGTTTATTCTATATGTCAGCTGAAAATAATGGTTTCAAATTTTTAATAATTTCTTGCTTGGATTAAACATTGAGGCATTGTCTTCATTGGTGCATCAATCAACCATATTTCTTCTCATACCATCTTCTAAGTGCTAATTTAAGTCACCTTTATATACTTTCAATCCACTTAGAGTAGGATGAAACTCTGAACAAAATTCATCAACCAAA----ACAGTCAACAAATCTCATTTGTCCTTGCACGTGAAACCTCGTTTGCTACTTCCTTGGTAACCTC i chlSab2.chr12 I 38 C 0 s calJac3.chr1 77088557 1011 + 210400635 AAACTGTTGGACGCTATTAAGTGTAATAGTTACAAGAGTAGAAATGTCAACTGGAGCATACTATTTAAGTTATTAACATGAAAAAAAG-AGCTTTGAATTGTTTTGTATGTTCTCTAACTGATCTATTTCTTTGGATGATCTAGTAATTTTTTTCTTCCAGATGTTTTTGAGT-------------TGGCACTGGCAAGCAAAAGTGATAACCATTTCTTGTTTTGCTTCATGGCTGCAGTTTACACTCCTGAAGTTAGCAATTATCTGAAGTTTTTCAAATGCATGGTTCACAAACTGCTGTGTACAGCCTCTCTCCTTGGCACAGGTGGTACAGGACAGCCTTTCATAAAGATACCAAGCTCCATACATACATAATAAAACATATATGAATTATCAGGCTATAGTTTTCCAAATTACTCCTCCAACAGAGATGCCCATAGAAGTCCTAGATGTAAGAGAAGCTAATCCT------GTT--ATTAAGGTAACCATGAGTTCTTTGTGTGATGCATTATCTAGTGTCACTGGGTTGGTAGGAGCAGTGGGAGTAGAGGCTAAAGAGCTAGGGAAAGATAGGCTTTGACAATCCTGAACGCACCCTCTGAGTATTTGTAGGGCCCAGGAATCAATCCACAAGTGAAGACCAGCTCAGGGAAAAATGGAATACAGTATCCTCTTGAAAATCTGGCCATAACTTGTGGCGATATAGGTCATAACTGAGATCAGATTTCTTGCAAGGGGTCAGTGTATGCAGTTTAGTCTGTATATCAGCTGGAAGTAATGGTTTTAAATTTTTAATAACTTCTTGCTGGGGTTAGACATTGAGTCATTGTCTTCACTGGTGCATCAATCAGCCATATTTCTTCTGATACTGTCTTCTAAGTGCCTATTTAAATCATCTTTGTATTCTTTCATTACACTTGGAGTAGAATGAAACTCTGAGCAAAATTCATCAACCAAAGCAAACAGTCAACAAATTTCATCTGTCTTTGCACATGAAACCTTGTTTGCCACTTCCTTGGTAACCTC i calJac3.chr1 C 0 C 0 a score=534840.000000 s hg38.chr9_GL383542v1_alt 9617 316 + 60032 CCTGAtttttttatt--t--tttattt-tttattttt---------cttgagatggagtctcactctgttgcccaggctggagtgcagtggtgcgatcttggctcactgcaaccttcccttcccaggttcaagcaattacctgcctcagcctcccaagtagctgggattacaggcacccgccaccacgccagagtaatttttgtctttttagtagagacggggtttcaccatgttggccaggctggtcttgaactcctgacctcgtgatccacctgcctcagcctcccaaagtgctgggattacaggcgtgagccactgcgcccggccTT s panTro4.chr9 86953040 323 + 137840987 CCTGATttttttatt--t--tttattt-tttattttt--tatttttcttgagatggagtctcactctgttgcccaggctggagtgcagtggtgcgatcttggctcactgcaaccttcccttcccaggttcaagcaattacctgcctcagcctcccaagtagctgggattacaggcacccgccaccacgccagagtaatttctgtctttttagtaaagacggggtttcaccatgttggccaggctggtcttgaactcctgacctcgtgatccacctgcctcagcctcccaaagtgctgggattacagacgtgagccactgcgcccggccTT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83583074 316 + 135191526 CCCGAtttttttatt--t--tttattt-tttattttt---------cttgagatggagtctcactctgttgcccaggctggagtgcagtggtgcgatcttggctcactgcaacctccccttcccaggttcaagcaattacctgcttcagcctcccaagtagctgggattacaggcacctgccaccacgccagactaatttttgtatttttagtagatatggggtttcaccatgttggccaggctggtcttgaactcctgacctcatgatccacctgcctcagcctcccaaagtgctgggattacaggtgtgagtcactatgcccggccTT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76103056 328 - 122973662 CCTGatttatttatt--ttatttatttatttatttttatttatttttttgagatggagtctcactctgtcgcccaggctggagtgcagtggcatgatctcagctcactgcaacctctccttcccaggttcaagtaattatctgcctcagcctcccaagtagctgggattacaggcacccgccaccacgccaaactaatttttgtatttttagtagagacggggtttcaccatgttggccaggctggtcttgaactcctgacctcgtgatccacctgcctcagcctcccaaagtgctgggattacaggcgtgaagcaccgcacctggccTT i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 97541909 246 + 112192347 CCTGAtttttttcttt-t--tttcttt-ttttttttt---------tttgagatggagtctcgctctgtcgcccaggctggagtgcagtggcgcgatctcgtctcactgcaacctccgctt---------------------------------------------------------tgccaccatgcccgacaaattgttgtatttttagtagagacggggtttcatcatgttggccaggctggtcttgaactcctgacctcgtgatccacctgcctcagcctcccaa--------------aggcgtgagccaccacactcggccTT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 98761966 247 + 112612857 CCTGAtttttttttttct--ttttttt-ttttttttt---------tttgagatggagtctcgctctgtcgcccaggctggagtgcagtggcgcgatctcggctcactgcaacctccgctt---------------------------------------------------------tgccaccatgcccgacaaattgttgtatttttagtagagaccaggtttcatcatgttggccaggctggtcttgaactcctgacctcgtgatccacctgcctcagcctcccaa--------------aggcatgagccaccacactcggccTT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 94475324 245 + 107442819 cctgatttttttctt--t--ttttctt-ttttttttt---------tttgagatggagtctcgctctgtcgcccaggctggagtgcagtggcgcgatctcggctcactgcaacctccgctt---------------------------------------------------------tgcCACCATGCCGGacaaattgttgtatttttagtagagacagggtttcatcatgttggccaggctggtcttgaactcctgacctcgtgatccacctgcctcagcctcccaa--------------aggcgtgagccaccacactcggcctt i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 98687065 245 + 108555830 CCttttttcttttct--t--tttcttt-ttttttttt---------tttgagatagagtctcgctctgtcgcccaggctgaagtgcagtggcgtgatcttggctcactgcaacctccgctt---------------------------------------------------------tgccaccaagcctgacaaattgttgtatttttagtagagacagggtttcatcacgttggccaggttggtcttgaactcctgacctcgtgatccacctgcctcagcctcccaa--------------aggtgtgagccaccatgcccagccTT i chlSab2.chr12 C 0 C 0 e calJac3.chr1 77089568 0 + 210400635 C a score=2990037.000000 s hg38.chr9_GL383542v1_alt 9933 992 + 60032 CCTGATTTTTTTCTTAACATCTAGTGTTAAAAGGTTCATCTGGTTTGGGATAAAGCTCAGTCTGTCGATTTGTTCTTCCCGCTCTTTCTTTGAATAAACTCTTCTCTGTTGCTGCCACGTTTATTGAATCCATTGTGTTTTTCACAATATCTAGTATTGGCTTAGCTCCGATAGTGTGCTGTTTCAACCCTGTTTTCACTGCTGATTGTGAGATACACTCCTTAAAGATTTG-TTAAAATTCTGAAACTCCTGTAATCTTGCCTGAAATCGTTTACCAAGTACTTCACTGCTTTCTGGCATCCCCTGTGGTTTGTGCTGTCTAGCACTAAGAACTTCCTTTGCTGAAATGAAGAATATATGATTCTGTGCTTCTAAAGGATCCACAACTTTAACCTCCTCCACAAAGAAATGCAAGCATCTTTCCATGTGCTGTCTACATACATCTTCCATATATTCTGGCTCTGATGAAGCGACATCCCAGTGATTATTCAGAATTAA---ATTATTAGGCTTGGAAAGCTGCTCATTTACCTTGTGAAAAAAATGTTTTTCTGTGTTCATTAGTGTTGATTCAGAGTTTACAAAC--AAAATGATGACATAAGCATCTAAGCAACACTCATCAATCCAGGTATCCAGCTCTGTAGTGACATCTGTGCCTGGACTGTCTACTAAAACCAGCTCACCTTTCAAGAGGACACACTTTGTCTTTGGCCAAAACACATGTATAAGACAGCCAGCTTCCAAGCCTTTGTCCACATGAAGGGCATAGGACAGCTGATGAACTGTGTTTACACTGTTTTTTCATCTTATCCTTTTGTCATAAGATAGG-TTTTATCTCCATTGGTCTCTTAAACACTTTGGAAGCAATTGGTTGTATGATCAATCCCACTAAGGAGAGCTTTATCCCACAACATTGCATTGATAACAGAGCTTGTCCTGCCAAAAAATGCCACCTTCATTTGTCTCCGAGATAGCACCTTACCAATGATAGAAAG s panTro4.chr9 86953363 992 + 137840987 CCTGATTTTTTTCTTAACATCTAGTGTTAAAAGGTTCATCTGGTTTGGGATAAAGCTCAGTCTGTCAATTTGTTCTTCTCGCTCTTTCTTTGAATAAACTCTTCTCTGTTGCTGCCGCGTTTATTGAATCCATTGTGTTTTTCACAATATCTAGTATTGGCTTAGCTCCGATAGTGTGCTGTTTCAACCCTGTTTTTACTGCTGATTGTGAGATACACTCCTTAAAGATTTG-TTAAAATTCTGAAACTCCTGTAATCTTGCCTGAAATCGTTTACCAAGTACTTCACTGCCTTCTGGCATCCCCTGTGGTTTGTGCTGTCTAGCACTAAGAACTTCCTTTGCTGAAATGAAGAATATATGATTCTGTGCTTCTAAAGGATCCACAACTTTAACCTCCTCCACAAAGAAATGCAAGCATCTTTCCATGTGCTGTCTACATACATCTTCCATATATTCTGGCTCTGATGAAGCGACATCCCAGTGATTATTCAGAATTAA---ATTATTAGGCTTGGAAAGCTGCTCATTTACCTTGTGAAAAAAATGTTTTTCTGTGTTCATTAGTGTTGATTCAGAGTTTACAAAC--AAAATGATGACATAAGCATCTAAGCAACACTCATCAATCCAGGTATCCAGCTCTGTAGTGACATCTGTGCCTGGACTGTCTACTAAAACCAGCTCACCTTTCAAGAGGACACACTTTGTCTTTGGCCAAAACACGTGTATAAGACAGCCAGCTTCCAAGCCTTTGTCCATATGAAGGGCATAGGACAGCTGATGAACTGTGTTTACACTGTTTTTTCATCTTATCCTTTTGTCATAAGATAGG-TTTTATCTCCATTGGTCTCTTAAACACTTTGGAAGCAATTGGTTGTATGATCAATCCCACTAAGGAGAGCTTTATCCCACAACATTGCATTGATAACAGAGCTTGTCCTGCCAGAAAATGCCACCTTCATTTGTCTCCGAGATAGCACCTTACCAATGATAGAAAG i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83583390 993 + 135191526 CCTGATTTTTTTCTTAACATCTAGTGTTAAAAGGTTCATCTGGTTTGGGATAAAGTTCAGTCTATCAATTTGTTCTTCCTGCTCTTTCTTTGAATAAACTCTTCTCTGTTGCTGCTGCGTTTATTGAATCCATTGTGTTTTTCACAATATCTAGTATTGGCTTAGCTCCGATAGTGTGCTGTTTGAACCCTGTTTTCACTGCTGATCGTGAGATACACTCCTTAAAGATTTG-TTAAAATTCTGAAACTCCTGTAATCTTGCCTGAAATCGTTTACCAAGTACTTCACTGCCTTCTGGCATCCCCTGTGGTTTGTGCTGTCTAGCACTAAGAACTTCCTTTGCTGAAATGCAGAATATATGATTCTGTGCTTCTAAAGGATCCACGACTTTAACCTCCTCCACAAAGAAATGCAAGCATCTTTCCATGTGCTGTCTACATATATCTTCCATATATTCTGGCTCTGATGAAGCGACATCCCAGTGATTATTCAGAATTAA---ATTATTAGGCTTGGAAAGCTGCTTATTTACCTTGTGAAAAAAATGTTTTTCTGTGTTCATTAGTATTGATTCAGAGTTTACAGAC--AAAATGATGACATGAGCATCTAAGTAACACTCATCAATTCAGGTATCCAGCTCTGTAGTGACATCTGTGCCTGGACTGTCTACTAAAACCAGCTCACCTTTCAAGAGGACACACTTTGTCTTTGGCCAAAACACATGTTTAAGACAGCCAGCTTCCAAGCCTTTGTCCATATGAAGGGCATAGGACAGCTGATGAACTGTGTTTACACTGTTTTTTCATCTTATCCTTTTGTCATAAGATAGGTTTTTATCTCCATTGGTCTCTTAAACACTTAGGAAGCAATCAGTTGTATGATCAGTCCCACTAAGGACAGCTTTATCCCACAACATTGCATTGATAACAGAGCTTGTCCTGCCAAAAAATGCCACCTTCATTTGTCTCCGAGATAGCACCTTACCAATGATAGAAAG i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76103384 988 - 122973662 CCTGATTTTTTTCTTAACATCTAGTGTTAAAAGGTTCATCTGGTTTGGGATAAAGTTCAGTCTATCAATTTGTTCTTCCCGC----TCTTTGAATAAGCTCTTCTCTGTTGCTGCCGCGTTTATTGAATCCATTGTGTTTTTCACAATATCTAGTATTGGCTTAGCTCCGAGAGTGTGCTGTTTAAACCCTGTTTTCACTGCTGATTGTGAGATACACTCCTTAAAGATTTG-TTAAAATTCTGAAACTCCTATAATCTTGCCTGAAATCGTTTACCGAGTACTTCACTGCCTTCTGGCATCCCCTGTGGTTTGTGCTGTCTAGCGCTAAGAACTTCCTTTGCTGAAATGAAGAATATATGATTCTGTGCTTCTAAAGGATCCACAACTTTAACCTCCTCCACAAAGAAATGCAAGCATCTTTCCATGTGCTGTCTACATACATCTTCCATATATTCTGGCTCTGATGAAGCGACATCCCAGTGATTATTCAGAATTAAATTATTATTAGGCTTGGAAAGCTGCTCATTTACCTTGTGAAAAAAATGTTTGTCTGTGTTCATTAGTGTTGATTCAGAGTTTACAAAC---AAATGATTACATAAGCATCTAAGCAACACTCATCAATCCAGGTATCCAGCTCTGTAGTGACATCTGTGCCTGGACTGTCTACTAAAACCAGCTCACCTTTCAAGAGGACACACTTTGTCTTTGGCCAAAACACGTGTAT--GACAGCCAGCTTCCAAGTCTGTGTCCATATGAAGGGCATAGGACAGCGGATGAACTGTCTTTACACTCTTTTTTCATCTTATCCTTTTGTCATAAGATAGG-TTTTATCTCCATTGGTCCCTTAAACACTTAGGAAGCAATTGGTTGTATGGTCAATCCCACTAGGGAGAGCTTTATCCCACAACATTGCATTGATAACAGAGCTTGTCCTGCCAAAAAATGCCACCTTCATTTGTCTCCGAGATAGCACCTTACCAATGACAGAAAG i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 97542155 980 + 112192347 CCTGATTTTTTTCTTAACATCTAGTGTTAAAAGGTTCATCTGGTTTGGGATAAAGTTCAGTCTACCAATTTGTTCTTCCCACTCTTCCTTTGAATAAGCTCTTCTCTGTCACTGCCACGTTTATTGAATCTATTGTGTTTTTCACAATATCTAGTCTTGGCTTAGCTCCGATAGTGTGCTGTTTGAACCTTGTTTTCACTGCTGATTGTGAGATACACTCCTCAAAGATTTG-TTAAAATTCTGAAACTCCTGTAATCTTGCCTGAAATCCTTTCCCAAGTACTTCACTGCCTTCTGGCATCCCCTGTGGTTTGTGCTGTCTAGCACTAAGAACTTCCTTTGCTGAAATGAAGAATATATGATTCTGTGCTTCTAAAGGATCCACAACTTTAACCTTCTCCACAAATAAATGCAAGCACCTTTCCATGTGCTGTCTGCATACATCTTCCTTATATTCTGGCTCTGATGAAGAGACAACCCAGTGATTATTCAGAGTTAA---ATTATTAGGCTTGGAAAGCTGCT--TTTACCTTGTGAAAAAAATGTTTTTCTGTGTTCATTAGTGTTGATTCAGAGTTTACAAAC--AAAATGATGACATGAGCATCTAACCAACACTCATCAATCCAGGTATCCAGCTCTGTAGTAACATCTGTGCCTGGACTGTCTACTAAAACCATCTCACCTTTCAAGAGGACACACTTTGTCTTTGGCCAAAACACATGTGTATGACAGCCAGCATCCAAGTCTTTGTCCATCTGAAGG----------GCTGATGAACTGTCTTTACGCTCTTTTTTCATCTTATCCCTTTGTCATAAGATAGG-TTTTATCTCCATTGGTCCCTTAAACACTTAGGAAGCAATTGGTTGTATAGTCAGTCCCACTAGGGAGAGCTTTATACCACAACATTGCATTGATAACAGAGCTTGTCCTGCCAAAAAATGCCACCTTCATTTGTCTCTGACATAGCACGTTACCAATGATAGAAAG i rheMac3.chr15 C 0 C 0 s macFas5.chr15 98762213 980 + 112612857 CCTGATTTTTTTCTTAACATCTAGTGTTAAAAGGTTCATCTGGTTTGGGATAAAGTTCAGTCTACCAATTTGTTCTTCCCACTCTTCCTTTGAATAAGCTCTTCTCTGTCACTGCCACGTTTATTGAATCTATTGTGTTTTTCACAATATCTAGTCTTGGCTTAGCTCCGATAGTGTGCTGTTTGAACCTTGTTTTCACTGCTGATTGTGAGATACACTCCTCAAAGATTTG-TTAAAATTCTGAAACTCCTGTAATCTTGCCTGAAATCCTTTCCCAAGTACTTCACTGCCTTCTGGCATCCCCTGTGGTTTGTGCTGTCTAGCACTAAGAACTTCCTTTGCTGAAATGAAGAATATATGATTCTGTGCTTCTAAAGGATCCACAACTTTAACCTTCTCCACAAATAAATGCAAGCACCTTTCCATGTGCTGTCTGCATACATCTTCCTTATATTCTGGCTCTGATGAAGAGACAACCCAGTGATTATTCAGAGTTAA---ATTATTAGGCTTGGAAAGCTGCT--TTTACCTTGTGAAAAAAATGTTTTTCTGTGTTCATTAGTGTTGATTCAGAGTTTACAAAC--AAAATGATGACATGAGCATCTAACCAACACTCATCAATCCAGGTATCCAGCTCTGTAGTAACATCTGTGCCTGGACTGTCTACTAAAACCATCTCACCTTTCAAGAGGACACACTTTGTCTTTGGCCAAAACACATGTGTATGACAGCCAGCATCCAAGTCTTTGTCCATCTGAAGG----------GCTGATGAACTGTCTTTACGCTCTTTTTTCATCTTATCCCTTTGTCATAAGATAGG-TTTTATCTCCATTGGTCCCTTAAACACTTAGGAAGCAATTGGTTGTATAGTCAGTCCCACTAGGGAGAGCTTTATACCACAACATTGCATTGATAACAGAGCTTGTCCTGCCAAAAAATGCCACCTTCATTTGTCTCTGACATAGCACGTTACCAATGATAGAAAG i macFas5.chr15 C 0 C 0 s papAnu2.chr15 94475569 980 + 107442819 tctgatttttttcttaacatctaGTGTTAAAAGGTTCATCTGGTTTGGGATAAAGTTCAGTCTACCAATTTGTTCTTCCCACTCCTCCTTTGAATAAGCTCTTCTCTGTCACTGCCACGTTTATTGAATCTATTGTGTTTTTCACAATATCTAGTCTTGGCTTAGCTCCGATAGTGTGCTGTTTGAACCTTGTTTTCACTGCTGATTGTGAGATACACTCCTCAAAGATTTG-TTAAAATTCTGAAACTCCTGTAATCTTGCCTGAAATCCTTTCCCAAGTACTTCACTGCCTTCTGGCATCCCCTGTGGTTTGTGCTGTCTAGCACTAAGAACTTCCTTTGCTGAAATGAAGAATATATGATTCTGTGCTTCTAAAGGATCCACAACTTTAACCTCCTCCACAAATAAATGCAAGCACCTTTCCATGTGCTGTCTGCATACATCTTCCTTATATTCTGGCTCTGATGAAGAGACAACCCAGTGATTATTCAGAGTTAA---ATTATTAGGCTTGGAAAGCTGCT--TTTACCttgtgaaaaaaatgtttttctgtgttcATTAGTGTTGATTCAGAGTTTACAAAC--AAAATGATGACATGAGCATCTAACCAACACTCATCAATCCAGGTATCCAGCTCTGTAGTGACATCTGTGCCTGGACTGTCTACTAAAACCATCTCACCTTTCAAGAGGACACACTTTGTCTTTGGCCAAAACACATGTGTATGACAGCCAGCATCCAAGTCTTTGTCCATCTGAAGG----------GCTGATGAACTGTCTTTACGCTCTTTTTTCATCTTATCCCTTTGTCATAAGATAGG-TTTTATCTCCATTGGTCCCTTAAACACTTAGGAAGCAACTGGTTGCATAGTCAGTCCCACTAGGGAGAGCTTTATCCCACAACATTGCATTGATAACAGAGCTTGTCCTGCCAAAAAATGCCACCTTCATTTGTCTCTGACATAGCACGTTACCAATGATAGAAAg i papAnu2.chr15 C 0 I 323 s chlSab2.chr12 98687310 982 + 108555830 CCTGATTTTTTTCTTAACATCTAGTGTTAAAAGGTTCATCTGGTTTGGGATAAAGATCAGTCTACCAATTTGTTCTTCCCGCTTTTCCTTTGAATAAGCTCTTCTCTGTCGCTGCCACATTTATTGACTCTATTGTGTTTTTCACAATATCTAGTCTTGGCTTAGCTCCGATAGTGTGCTGTTTGAACCTTGTTTTCACTGCTGATTGTGAGATACACTCCTCAAAGATTTG-TTAAAATTCTGAAACTCCTGTAATCTTGCCTGAAATCCTTTCCCAAGTATTTCACTGCCTTCTGGCATCCCCTGTGGTTTGTGCTGTCTAGCACTAAGAACTTCCTTTGCTGAAATGAAGAATATATGATTCTGTGCTTCTAAAGGATCCACAACTTTAACCTCCTCCACAAATAAATGCAAGCACCTTTCCATGTGCTGTCTGCACACATCTTCCTTATATTCCGGCTCTGATGAAGAGACAACCCAGTGATTATTCAGAGTTAA---ATTATTAGGCTTGGAAAGCTGCT--TTTACCTTGTGAAAAAAATGTTTTTCTGTGTTCATTAGTGTTGATTCAGAGTTTACAAACAAAAAATGATGACATGAGCATCTAAGCAACACTCATCAATCCAGGTATCCAGTTCTGTAGTGACATCTGTGCCTGGACTGTCTACTAAAATCATCTCACCTTTCAAGAGGACACACTTTGTCTTTGGCCAAAACACATGTGTAAGACAGCCAGCATCCAAGTGTTTGTCCATCTGAAGG----------GCTAATGAACTGTCTTTACGCTCTTTTTTCATCTTATCCCTTTGTCATAAGATAGG-TTTTATCTCCATTGGTCCCTTAAACACTTAGGAAGCAATTGGTTGTATGGTCAGTCCCACTAGGGAGAGCTTTATCCCACAACATTGCATTGTTAACAGAGCTTGTCCTGCCAAAAAATGCCACCTTCATTTGTCTCTGACATAGCACCTTACCAATGATAGAAAG i chlSab2.chr12 C 0 C 0 s calJac3.chr1 77089568 983 + 210400635 TCTGATTTTTTTCTTAACATCTAGTGTTAAAAGGTTCAACTGGTTTTGGATAAAGTCCAGTCTATCAGTTTGTTCTTCCCGCTCTTTCTTTGAATAAGCTCTTCTCTGTTGCTGCCACGTTTATTGAATCCATTGTGTTTTTTGCGATATCTTGTATTGACTTAGCTCTGATTATATGCTGTTTGAACCTTGTTTTCACTGCTGATTGTGATATATATTCCTCAAAGATTTGTTTAAAATTCTGAAACTCCTATTATCTTTCTTGAAATCCTTTAGCAAGTACTTCACTGCCTTCTGGCATCTCCTGTGGTTTGTACCATCTAGCACTAAGAACTTGCTTTGCTGAAATAAAGAATATGTCATTCTGTGCTTCTAAAGGATCTACAACTTGAAGCTTCTCCACAAAGAAATGCAAGCATCTTTCTATGTGCTGTGTGCATGCATCTTCCATATATTCTGGCTCTGATGAAGACACATCCCAGTAATTATTCAGAATTAA---ATTATTAGGCTTGGAAAACTGCTCATTTGCCTTGTG-AAGAAATGTTTTTCTGTGTTTGCTAGTGTCGATTCAGAGTTTACAACC--AAAATG---ACATGAACATCTAAGCAATGCTCATCAATTCAGGTGTCCAGCTCTGTTGTGACATCTGTGCCTGGACTGTCTACTAAAACCAGCTCACCTCTCAAGAGGACACACTTTGTCTTTGGCCAAAACACATGGATAAGACAGCGAGCTTCCAAGTCTTTGTCCATATGAAGGGCATAGGACAGCTGATGAACTGTCTTCACACTCTTTTT--ATCTTATCCTTTTGTCATAAGATAGG-TTTTATGTCCACTGGTTCTTTAAACA----GGAAGCAATTGGTTGTATGGCCAGTCCCACTAGGAAGAGCATTATCCCACAACATTGCATTGACAACAGAGCTTGTCCTGCCAAAAAATGCCACCTTCATTTATCTCTGAGATAGCACCTTACCAACGATAAAAAC i calJac3.chr1 C 0 C 0 a score=3595636.000000 s hg38.chr9_GL383542v1_alt 10925 1187 + 60032 CTTGTTTTTATATTCTTACATTTCTACTTGATTATCCTCAGTAGCTCAGTCAAGTTCTAGATTCTTATATGTTGCTATTATTATTCCACCCTGATTGGATCTTCAGATCTTGAGCTGAGAAGGGAGATTCACATACTTCAACAATATGTGATCCTCAGTAACAAACTCCAGTAACTGGTCAAAGATTTCAGTAATTGCCTTCTTATCCAGCACAAAGTGTTTCAGTGGAG----------------------AAGCCCCCAAG------------------------------------CTGCCCCATCTTTCCAAGAGATCGCTCTGTTAATTttttttacatctttttttatcttggtatttcattttagatagcatc----taatgctgtcttttaggtcactgatactttcttctaaaatttctgatctgctgtaattctcatctaatatgtttttcaactcagtttttgaagttttcatctctagaagtttgatttggatcttctatgtcactacgtagcatttttaatcttttctctatcttcttaaacatatgaaatttgatcagaataactgttttaaaagtccttgcctattctatcatctgtgtcattttggagctggttttgattcactgatttttcttctcattatgggctgtgttttcttgcttctaggaatgtctggcaatttttctttgaatggtagatattgatgatttatttcattggttgttgactattttggtactcctataaatatttctgggctctgttctgagatgtcgttaaggtactttgaaagagtttgatcatttctcggcttgcttt--taaaatttgtccattagaagcagatctgaatttattctaggattcatttttctccactacagtggcaaggtggttcttagtacattaactgatgctctctgaatgacaaggttttccattccggtttttcggaacaggtgctatttttggccttgtgtgttctttgaagcactgttctcttcaaccttttggatcattcttcccccatcctcaaagcgtttcttcacacatatgtac---tgatcagtgctctgctcaagatcccatgggaactctctgcaggtgtccagggttcttcctctgtgccgctctcttctcttcagaactcttgctctcttggcttccccaattcccagctctgtctcaactcagaaagaccaccatgttccgcctggttgcccctccctgcgccatggcc s panTro4.chr9 86954355 1187 + 137840987 CTTGTTTTTATATTCTTACATTTCTACTTGATTATCCTCAGTAGCTCAGTCAAGTTCTAGATTCTTATATGTTGCTATTATTATTCCACCCTGATTGGATCTTCAGATCTTGAGCTGAGAAGGGAGATTCACATACTTCAACAATATGTGATCCTCAGTAACAAACTCCAGTAACTGGTCAAAGATTTCAGTAATTGCCTTCTTATCCAGCACAAAGTGTTTCAGTGGAG----------------------AAGCCCCCAAG------------------------------------Ctgccccatctttccaagagatcgctctgttaatttttttaaaatctttttttatcttggtatttcattttagatagcatc----taatgctgtcttttaggtcactgatactttcttctaaaatttctgatctgctgtaattctcatctaatatgtttttcaactcagtttttgaagttttcatctctagaagtttgatttggatcttctatgtcactacgtagcatttttaatcttttctctatcttcttaaacatatgaaatttgatcagaataactgttttaaaagtccttgcctattctatcatctgtgtcattttggagctggttttgattcactgatttttcttctcattatgggctgtgttttctggcttctaggaatgtctggcaatttttctttgaatggtagatattgatgatttatttcattggttgttgactattttggtactcctataaatatttctgggctctgttctgagatgtagttaaggtactttgaaacagtttgatcatttctcggcttgcttt--taagatttgtccattagaagcagatctgaatttattctaggattaatttttatccactacagtggcaaggcggttcttagtacattaactgatgctctctgaatgacaaggttttccattctggtttttcggaacaggtgctatttttggccttgtgtgttctttgaagcactgttctcttcaaccttttggatcattcttcccccatcctcaaagcgtttcttcacacatatgtac---tgatcagtgctctgctcaagatcccatgggaactctctgcaggtctccagggttcttcctctgtgccgctctcttctcttcagaactcttgctctcttggcttccccaattcccagttctgtctcaactcagaaagaccaccatgttctgcctggttgcccctccctgcgccatggcc i panTro4.chr9 C 0 I 439 s ponAbe2.chr9 83584383 1185 + 135191526 CTTGTTTTTATATTCTTACATTTCTACTTGATTATCCTCAGTAGCTCAGTCAAGTTCTAGATTCTTATATGTTGCTATTATTATTCCACCCTGATTGGATCTTCAGATCTTGAGCTGAGAAGGGAGATTCACATACTTCAACAATATGTGATCCTCAGTAACAAACTCCAGTAACTAGTCAAAGATTTCAGTAATTGCCTTCTTAT-CAGCACAAAGTGTTTCAGTGGAG----------------------AAGCCCCCAAA------------------------------------CTGCCCCATCTTTCCAAGAAATCGCTCTGTTAATTttttttaaatctttttttatcttggtgtttcattttagatagcatc----taatgctgtcttttaggtcactgatattttcttctaaaatttctgatctgctgtaattctcatctaatatatttttcaactcagtttttgaagttttcatctctagaagtttgatttggatcttccatgtcactacttagcatttttaatcttttctctagcttcttaaacatatgaaatttgatcagaataactgtttt-aaagtccttgcctattctatcatctgtgtcattttggagctggttttgattcactgatttttcttctcattatgggctgtattttcttgcttctaggaatgtctggcaatttttctttgaatggtagatattgatgatttatttcattggttgttgactattttggtactcctataaatatttctgggctctgttctgagatgtagttaaggtactttgaaagagtttgatcatttctcggcttgcttt--taagatttgtccattagaagcagatctgaatttattctaggattaatttttctccactatagtggcaaggcggttcttagtacattaactgatgctctctgaattacaaggttttccattctggtttttgggaacaggtgctatttttggccttgtgtgttttttgaagcactgttctcttcaatcttttggatcattcttcccccatcctcaaagcgtttcttcacacatatgtac---tgatcagtgctctgctcaagatcccacgggaactctctgcaggtctccagggttcttcctctgtgctgctctcttctcttcagaactcttgctctcttggcttccccaattcccagctctatctcaactcagaaagaccaccatgttccgcctggttgcccctccctgcgccatggcc i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76104372 1184 - 122973662 CTTGTTTTTATATTCTTATATTTCTACTTGATTATCCTCAGTAGCTCAGTGAAGTTCTAGATTCTTATATGTTGCTATTATTATTCCACCCTGATTGGATCTTCAGATCTTGAGCTGAGAAGGGAGATTCACATACTTCAACAAAATGTGATCCTCAGTAACAAACTCCAGTAACTGGTCAAAGATTTAAGTAATTGCTTTCTTATCCAGCACAAAGTGCTTCAGTGGAG----------------------AAGCCCCCAAG------------------------------------Ctgccccatctttccaagagatcactctgttaattttttttaaatcttttttaatcttggtgtttcattttagatagcatc----taatgctgtcttttaggtcactgatattttcttctaaaatttctgatctgctgtaattctcatgtaatatatttttcaactcagtttttaaagctttcaactctggaagtttgatctggatcttccatgtcactacttggcatttttaatcttttctctagcttcttaaacatatgaaatttgatcagaataactgtttt-aaagtccttgcctattctatcatctgtgtcattttggagctggttttgattcactgatttttcttctcattatgggctgtattttcttgcttctatgaatgtctggcaatttttctttgaatggtagatattgatgatttatttcatttgttgttgactatttttgtactcctataaata--tctgagctctgttctgagatgtagttaaggtactttgaaagagtttgatcatttctcggcttgcttt--taagatatgtttattagaagcagatctgaatttattctaggattaatttttctccactacagtggcaaagcggttcttagtacattaactgatgctctctgaattacaaagttttccattctggtttttgggaacaggtgctatttttggccttgtgtgttctttgaagcactgttctcttcaatcttttggatcattcttcccccatcttcaaagcatttcttcacacatatgtac---tgatcagtgctctgctcaagatcccatgggaactctctgcaggtctccagtgttcttcctctgtgccgctctcttctcttcagaactcttgctctcttggcttccccaattcccagctctgtctcaactcagaaagaccaccatgttccacctggttgcccctccctgcgacatggcc i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 97543135 1189 + 112192347 CTTGTTTTTATATTCTTGTATTTCTACTTGATTATCCTCAGTAGCTCAGTCAAGTTCTAGATTCTTATATGTTGCTATTTTTATTCCACCTGGATTGGATCTTCAGATCTTGAGCTGAGAAGGGAGATTCACATACTTCAGCAATATGTGATCCTCAGTAACAAACTCCAGTAACTGGTCAAAGATTGCAGTAATTGCCTTCTTATCCAGCACAAAGTGCTTCAGTGGCA----------------------AAGTCCCCAAG------------------------------------CTGCCCCATCTTTCCAAGAGATCACTCTGttaatttttttaaaatatttttttctcttggtgtttcattttagatagcatccaattagtactgtcttttaggtcactgatattttcttctaaactttctgatctgctgcaattctcatctaatatatttttcaactcagtttttgaagttttcatctctagaagtttgatttggatcttccatgtccctacttagcatttttaatcttttctctagcttcttgaacatatgaaatttgatcagaatgactgtttt-aaagtccttgcctattctatcatttgtgtcattttgaagctggttttgattcaatgatttttcttctcattatggactgtattctcctgcttctatgaatgtctggcaatttttctttgaatagtagatattgatgatttatttcattggttgttgactatttttgtactcctataaatatttctgagctctgttctgagatatagttaaggtactttgaaagagtttgatcatttctgggcctgcttt--taagatttgttcattagaagcagatctgaatttattctaggattaatttttctccactacagtggcaaggcagttcttcgtacattaactgatgctctctgaattacaaggttttccattctggtttttgggaacaggtgctatttttggccttgtgtgttctttgaagcactgttctcttccatcttttggatcattcttcccccatcctcaaagcatttcctcacacatatgtac---tgatcagtgctctgctcaagatcccac-ggaactctctgcaggtctccagggttcttcctctgtgcagctctcttctcttcagaactcttgctctcttgacttccccaattcccagctctgtctcaactcaggaagaccaccatgctccacccgggtgcccctccctgcgccatggcc i rheMac3.chr15 C 0 C 0 s macFas5.chr15 98763193 1189 + 112612857 CTTGTTTTTATATTCTTGTATTTCTACTTGATTATCCTCAGTAGCTCAGTCAAGTTCTAGATTCTTATATGTTGCTATTTTTATTCCACCTGGATTGGATCTTCAGATCTTGAGTTGAGAAGGGAGATTCACATACTTCAGCAATATGTGATCCTCAGTAACAAACTCCAGTAACTGGTCAAAGATTGCAGTAATTGCCTTCTTATCCAGCACAAAGTGCTTCAGTGGCA----------------------AAGTCCCCAAG------------------------------------Ctgccccatctttccaagagatcactctgttaatttttttaaaatctttttttctcttggtgtttcattttagatagcatccaattagtactatcttttaggtcactgatattttcttctaaactttctgatctgctgcaattctcatctaatatatttttcaactcagtttttgaagttttcatctctagaagtttgatttggatcttccatgtccctacttagcatttttaatcttttctctagcttcttgaacatatgaaatttgatcagaatgactgtttt-aaagtccttgcctattctatcatttgtgtcattttgaagctggttttgattcaatgatttttcttctcattatggactgtattctcctgcttctatgaatgtctggcaatttttctttgaatagtagatattgatgatttatttcattggttgttgactatttttgtactcctataaatatttctgagctctgttctgagatatagttaaggtactttgaaagagtttgatcatttctgggcttgcttt--taagatttgttcattagaagcagatctgaatttattctaggattaatttttctccactacagtggcaaggcagttcctcgtacattaactgatgctctctgaattacaaggttttccattctggtttttgggaacaggtgctatttttggccttgtgtgttctttgaagcactgttctcttccatcttttggatcattcttcccccatcctcaaagcatttcctcacacatatgtac---tgatcagtgctctgctcaagatcccac-ggaactctctgcaggtctccagggttcttcctctgtgcagctctcttctcttcagaactcttgctctcttgacttccccaattctcagctctgtctcaactcaggaagaccaccatgctccacccgggtgcccctccctgcgccatggcc i macFas5.chr15 C 0 C 0 s papAnu2.chr15 94476872 1189 + 107442819 cttgtttttatattcttgtaTTTCTACTTGATTATCCTCAGTAGCTCAGTCAAGTTCTAGATTCTTATATGTTGCTATTTTTATTCCACCTGGATTGGATCTTCAGATCTTGAGCTGAGAAGGGAGATTCACATACTTCAGCAATATGTGATCCTCAGTGACAAACTCCAGTAACTGGTCAAAGATTGCAGTAATTGCCTTCTTATCCAGCACAAAGTGCTTCAGTGGAA----------------------AAGTCCCCAAG------------------------------------CTGCCCCATCTTTCCAAGAGATcactctgttaatttttttaaaatctttttttctcttggtgttTCATTTTAGATAGCATCCAATTAGTACTGTCTTTTAGGTCactgatattttcttctaaactttCTGATCTGCTGCAATTCTCATCTAATATATTTTTCAACTCAGTTTTTGaagttttcatctctagaagtttgATTTGGATCTTCCATGTCCCTACTTagcatttttaatcttttctctaGCTTCTTGAACTTATGAAATTTGATCAGAATGACTGTTTT-AAAGTCCTTGCCTATTCTATCATTTGTGTCATTTTGAAGCTGGTTTTGATTCaatgatttttcttctcattatggACTGTATTTTCCTGCTTCTATGAATGTCTggcaatttttctttgaatagtAGATATTGATGATTTATTTCATGGGTTGTTGACTATTTTTGTACTCCTATAAATATTTCTGAGCTCTGTTCTGAGATATAGTTAAGGTACTTTGAAAGAGTTTGATCATTTCTGGgcttgcttt--taagatttgttcATTAGAAGCAGATGTGAATTTATTCTAGGATTAATTTTTCTCCACTACAGTGGCAAGGCGGTTCTTCATACATTAACTGATGCTCTCTGAATTACAAGGTTTTCCATTCTGGTTTTTGGGAACAGGTGCTATTTTTGGCCTTGTGTGTTCTTTGAAGCACTGTTCTCTTCAATCTTTTGGATCATTCTTCCCCCATCCTCAAAGCATTTCCTCACACATATGTAC---TGATCAGTGCTCTGCTCAAGATCCCAT-GGAActctctgcaggtctccagggttcttcctctgtgcagctctcttctcttcagaactcttgctctctTGACTTCCCCAATTCCCAGCTCTGTCTCAACTCAGGAAGACCACCATGCTCCACCTGGGTGCCCCTCCCTGCGCCATGGCC i papAnu2.chr15 I 323 C 0 s chlSab2.chr12 98688292 1187 + 108555830 CTCGTTTTTATATTCTTGTATTTCTACTTGATTATCCTCAGTAGCTCAGTCAAGTTCTAGATTCTTATATGTTGCTATTTTTATTCCACCCGGATTGGATCTTCAGATCTTGAGCTGAGAAGGGAGATTCACATACTTCAGCAATATGTGATCCTCAGTAACAAACTCCAGTAACTGGTCAAAGATTGCAGTAATTGCCTTCTTATCCAGCACAAAGTGCTTCAGTGGCA----------------------AAGTCCCCAAG------------------------------------Ctgccccatctttccaagagatcactctgttagtttttttaaaatc-ttttttctcttggtgtttcattttagatagcatccaattagtactgtcttttaggtcactgatattttcttctaaactttctgatctgctgcaattctcatctaatatatttttcaactcagtttttgaagttttcatctctagaagtttgatttggatcttccatgtccctatttagcatttttaatcttttctctagcttcttgaacatatgaaatttgatcagaatgactgtttt-aaagtccttgcctattctatcatttgtgtcattttggagctgattttgattcaatgatttttctcctcattatggactgtattttcctgcttctatgaatgtctggaaatttttctttgaatagtagatattgatgatttatttcattggttgttgactatttttgtactcctataaatatttctgagctctgttctgagatatagttaaggtactttgaaagagtttgatcatttctgggcttgcttt--taagatttgttcattagaagcagttctgaatttattctaggattaatttttctccactacagtggcaaggcggttcttcgtacattaactgatgctctctgaattacaaggttttccattctggtttttgggaacaggtg-tatttttggccttgtgtgttctttgaagcactgttctcttcaatcttttggatcattcttcccccatcctcaaagcgtttcctcacacatacgtac---tgatcagtgctctgctcaagatcccat-ggaactctctgcaggtctccagggttcttcctctctgcagctctcttctcttcagaactcttgctctcttgacttccccaattcccagctctgtctcaactcaggaagaccaccatgctccacctgggtgcccctccctgcaccatggcc i chlSab2.chr12 C 0 C 0 s calJac3.chr1 77090551 1237 + 210400635 TTTGTTTTTATATCTTTGTGTTTCTACTTGATTATCCTTAGTAGCTCAGTCAAGTTCTATGTTCTTGTATGTTGCCATTATTATTCCACCCTGACTGGATCTTCAGATCTTGAGCTGAGAAGGGAGATCCACATACTTCAACAATATGTGATCCTCAGTAACAAACTCCAGTAAGGGGTCAAAG---------ATTGCCTTTTTATCCAGCACAAAGTGCTTCAGTAAAGGAGCAGTTTCTGCCATTATGCTAAGTTTCCAAGACTCTGACATGTTACCCAGCAACTATAGCTTGGTCATGGCCCCACCCTTCCAAGAGATCACTCTGTTAATTCttttttaatctttttt--tctttgtgtttcattttagacagcatc----taacgttgtcttttaggtcactaatattttcttctaaaacttctgatctgctgcaattctcatgtaatatagtttttgactcagtttttgaagttttcatctctagaagtttcgtttgggtcttccatgtcactacttagcatttttaatcttttctctagcttcttaaacatatgaaatttgatcagaatagctgcttt-aaagtccttgactatgctataatcggtgtcattttggagttggttttgattcactgattttgcttctcattataggctgtattttcctgcttctttgcatgtctgacaatttttcgttgaatgctggatagtgatgatttatttcattggttgttgactatttttttattcctgtaaatactttttatctctgttatgagacgtagttaaggtactttgaaaaagtttgatcatttctgggcttgcttttataagagttgttcattagaaacagatctgaatttagtctaggattaatttttctccactacagtggcaaggcggttcttagtacattaactgat-ctccctgaattataaggttttccattctggtttttgggaacaggcactatttttggcctcatgtgttctttgaagcgctgttctcttcagtcttttggatcactcttcccccatcctcagagagtttcctcacacatatgtactgatgatcagtgctctgctcaagatcctatgggaactctctgtgggtctccagggttcttactctgtgaagctctcttctcttcagaactcttgctctcttggcttccccaattcccagctctgtctcaacttagagagaccaccatgctctacctggttgcccctccctgtaccatggcc i calJac3.chr1 C 0 C 0 a score=3522780.000000 s hg38.chr9_GL383542v1_alt 12112 1193 + 60032 tgaaagctttctcagagccataaggtgggcaatcttagggttcactttgacgcagggcagctgagcccccaaattggagtcttagcccaggaaagttcttagctttacccaggaaggaattcaagggtgagccaggggtatt-agacagcaatcttttattgaaccagaactgtcctcacggagcagggctaactcataggcagtgc-cccaaagcatttcttgtgggctgttggttacctgtgtttctacctacttttacccacttttaattacatgcaaaattaaggggtgaattaatgcaaattaaggggcaggtcattcagaacattctagaaaagagggggcaacttcctggtcattgccacagaaagaggtggtaacttctggtcattgccatgacatttgtaaactgtcttggtgctgatgagagtatcttatgctaatgagcattgggagcaactagaagctgcctttgagccacctgctggtttttgccagtttcttcactgcgtcctgttttgaccagatcctggcttggtcagcagggttgtgactggaaagcaaatcctgccagcctccttcctcaACTGCACgtttctcatgcttcttagatatcactgt-ctttggtgcctgatgtccatgcaatgttgttctttcatgtatttattttggttgtttcaagcaggagattgttactccatttcaaccaaaTTTAAAGCCCTTTAAAATCTCTTCCATTTTACACTGTCTTCTCCATTTGCAGAGGCATCAGATAAAATTCCTTTGACTTTCTGCAGTCTTTCTTTGAATAGTAAACCTAAAAATATACTTATTTTTGGATATTTAAAATATTTCTCTAGTTATTATAGTGCAAGTTCATTTTTATATTTCAATATCAGGCTTTCATTTTAATAGCAATATTATTTTCTACCTTATACTTACTCATATTACAACTTCTCTCAAAATGCTCTGTGAAGCCATTTCTAAAGTTGAATCAGGAAATTATCTAGCAAAGGCCAGGAATTAGGATTATGGCTTTATTACAATAATAGAGTGTCACTACCATACTTCTTTATAAGGCAAAAATGTTATCCATATTGTGAATGAAATTTCCATAGTAGTGTCTTCAA-----AAAG-----TAATGAGTACTTTAGTATTTTTTTAATATACAGAATAAATATTTTTTTAAAGT---ATCAGT s panTro4.chr9 86955981 1193 + 137840987 tgaaagctttctcagagccataaggtgggcaatcttagggttcactttgacgcagggcagctgagcccccaaattggagtcttagcccaggaaagttcttagctttacccaggaaggaattcaagggtgagccaggggtatt-agacagcaatcttttattgaaccagaactgtcctcatggagcagggctaactcataggcagtgc-cccaaagcatttcttatgggctgttggttacctgtgtttctacctacttttacccacttttaattacatgcaaaattaaggggtgaattaatgcaaattaaggggcaggtcattcagaacattctagaaaagagggggcaacttcctggtcattgccacagaaagaggtggtaacttctggtcattgccatgacatttgtaaactgtcttggtgctgatgagagtatcttatgctaatgagcattgggagcaactagaagctgcctttgagccacctgctggtttttgccagtttcttcactgcgtcccgttttgaccagatcctggcttggtcagcagggttgtgactggaaagcaaatcctgccagcttccttcctcaACTGCACgtttctcatgcttcttagatatcactgt-ctttggtgcctgatgtccatgcaatgttgttctttcatgtatttattttggttgtttcaagcaggagattgttactccatttcaaccaaaTTTAAAGCCCTTTAAAATCTCTTCCATTTTACACTGTCTTCTCCATTTGCAGAGGCATCAGATAAAATTCCTTTGACTTTCTGCAGTCTTTCTTTGAATAGTAAACCTAAAAATATACTTATTTTTGGATATTTAAAATATTTCTCTAGTTATTATAGTGCAAGTTCGTTTTTATATTTCAATATCAGGCTTTCATTTTAATAGCAATATTATTTTCTACCTTATACTTACTCATATTACAACTTCTCTCAAAATGCTCTGTGAAGCCATTTCTAAAGTTGAATCAGGAAATTATCTAGCAAAGGCCGGGAATTAGGATTATGGCTTTATTACAATAATAGAGTGTCACTACCATACTTCTTTATAAGGCAAAAATGTTATCCATATTGTGAATGAAATTTCCATAGTAGTGTCTTCAA-----AAAG-----TAATGAGTACTTTAGtatttttttaatatacagaataaatatttttttaaaGT---ATCAGT i panTro4.chr9 I 439 C 0 s ponAbe2.chr9 83585568 1200 + 135191526 tgaaagctttctcagagccataaggtgggctatcttagggctcactttgacgcagggcagctaagcccccaaatcggagtc--agcccaggaaagttcttggctttacccaggaaggaattcaagggtgagccaggggtatt-agacagcaatcttttattgaaccagaactgtcctcacggagcagggctaactcataggcagtgc-cccaaagcatttcttgtgggctattggctacctgtgtttctacctacttttacccacttttaattacatgcaaaattaaggggtgaattaatgtaaattaaggggcaggtcattcagaacattctagaaaagagggggcaacttcctggtcattgccacagaaagaggtggtaacttctggtcattgccatgacatttgtaaactgtcttggtgctgatgagagtatcttatgttaatgagcattgggagcaactagaagctgcctttgagccatctgctggtttttgccagtttcttcactgtgtcctgttttgaccagatcctggcttggtcagcagcgttgtgactggaaagcaagtcctgccagcctccttcctcaACTGCACgtttctcatgcttcttagatatcactgtcctttgctgcctgatgtccatgcaatgttgttctttcatgtatttattttggttgcttcaagcaggagattgttactccatttcaaccaaaTTTAAAGCCCTTTAAAATCTCTTTCATTTTACACTGTCTTCTCCATTTGCAGAGGCATCAGATAAAATTCCTTTGACTTTTTGCAGTCTTTCTTTGAATAGTAAACCTAAAAATATACTTATTTTTGAATATTTAAAAGATTTCTCTAGTTATTATAGTGCAAGTTCATTTTTATATTTCAATACCAGGCTTTCATTTTAATAGCAATATTATTTTCTACCTTATACTTACTCATATTACAACTTCTCTCAAAATGCTCTGTGAAGCCATTTCTAAAGTTGAATCAGGAAATTATCTAGCAAAGGCCAGGAATTAGGATTATGGCTTTATTACAATAATAGAGTGTCACCACCATACTTCTTTATAAGGCAAAAATGTTATCCATATTGTGAATGAAATTTCTATAGTAGTGTCTTCAAAAAGTAAAG-----TAATGAGTACTTTAGTATTTTTTAAATACACAGAATAAATATTTTTTTAAAGTATCATCATT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76105556 1183 - 122973662 tgaaagctttctcagagccataaggtggacaatcttagggctcactttgacgcagggcagctgagcccccaaattggagtcttagcccaggaaaattcttggctttacccaggaaggaattcaagggtaagccaggggtatt-agacagcaatcttttattgaaccagaactgtcctcatggagcagggctaactcataggcagtgc-cccaaagcatttcttgtgggctgttggctacctgtgtttctacctgcttttacccacttttaattacatgcaaaattaaggggtgaattaatgcaaattaaggggcaggtcattcagaatgttatagaaaagagggggcaacttcctggtcattgccacagaaagaggtggtaacttctggtcattgccatgacatttgtaaactgtcttggtgctgatgagagtatcttatgctaatgagcattgggagcaactagaagctgcctttgagccacctgctggtttttgccagtttcttcacagagtcctgttttgaccagatcctggcttggtcagcagggttgtgactgaaa--------ctgccagcctccttcctcaACTGCACTtttctcatgcttcttagatatcactgtcctttgctgcctgatgtccatgcaatgtta---tttcatgtatttattttggttgtttcaagtaggagattgttactccatttcaaccaaaTTTAAAGCCCTTTAAAATCTCTTTCATTTTACACTGTCTTCTCCATTTGTAGAGGCATCAGATAAAATTCCTTTGACTTTCTGCAGTCTTTCTTTGAATAGTAAACCTAAAAATATACTTATTTTTGGATATTTAAAAGATTTCTCTAGTTATTATAGTGCAAGTTCATTTTTATATTTCAATATCAGGCTTTCATTTTAATAGCAATATTATTTTCTACCTTATACTTACTCAT-TTACAACTTCTCTCAAAATGCTCTGTGAAGCTATTTCTAAAGTTGAATCAGGAAATTATCTACCAAAGGCCAGGAATTAAGATTATGGCTTTATTACAATAATAGAGTGTCACTACCATACTTCTTTATAAGGCAAAAATGTTATCCATATTGTGAATGAAATTTCCATAGCAGTGTCTTCAA-----AAAG-----TAATGAGTACTTTAGTATTTTTTAAATATACAGAATAA--TTTTTTTTAAAGTATCATCATT i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 97544324 1178 + 112192347 tgaaagctttctcagagccataaggtgggcaatcttagggctcactttgacgcagggcagctgagcccccaagttggagtcttaccccaggaaggttcttggctttacccacgaaggaattcaagggtgagccaggggtatt-agacagcaatcttttattgaaccagaactgtcctcacagagcagggctaactcataggcagtac-cccaaagcatctcttgtgggctgttggctacccgtatttttacctacttttacccacttttaattatatgcaaaattaagggatgaattaatgcaaattaaggggcaggtcattcagaactttctagaaaagagggggcaacttcctggtcattgccacaaaaagaggtgataacttctggtcattgccatgacatttgtaaactgtcttggtgctgatgagagcatcttatactaacgagcactgggagcaactagaagctgcctttgagccacctgctgttttttgccagtttcttcactgcgtcctgttttgaccagatcctggcttggtcagcagggttgtgactggaaagcaagtcctcccagcctcctt-ctcaACTGCACgtttctcatgcttcttagagatcactgtcctttgttgcctgatgtccatgccatgttgttctttcatg-----attttggttgtttcaagcagaagattgttactccatttcaaccaaatgtaaaGCCC-TTAAAATCTCTTTCATTTTACACTGTGTTCTC---------------CAGATAAAATTCCTTTGACTTTCTGCAGTCTTTCTTTGAATAGTAAACCTAAAAATATACTTATTTTTGGATGTTTAAAAGATTTCTCTAGTTATTATAGTGCAAGTTCATTTTTATATTTCAATATCAGGCTTTCATTTTAATAGCAATATTATTGTCTACCTTATACTTACTCATATTACAACTTCTCTCAAAATGCTCTTTGAAGCCGTTTCTGAAGTTGAATCAGGAAATTATCTAGCAAAGGCCAAGAATTAGGATTATGGCTCTATTACAATAATAGAGTGTCACTACCATACTTCTTTATAAGGCAAAAATGTTACCCATATTGTGACTGAAATTCCCATAGTAATGTCTTCAA-----AAAGTAAAATAATGAGTACTTTAGTATTTTTTAAATTTACACAAGAA--ATTTTTTTAAAGTGTCATCATT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 98764382 1179 + 112612857 tgaaagctttctcagagccataaggtgggcaatcttagggctcactttgacgcagggcagctgagcccccaagttggagtcttaccccaggaaggttcttggctttacccacgaaggaattcaagggtgagccaggggtatt-agacagcaatcttttattgaaccagaactgtcctcacagagcagggctaactcataggcagtac-cccaaagcatctcttgtgggctgttggctacccgtatttttacctacttttacccacttttaattatatgcaaaattaagggatgaattaatgcaaattaaggggcaggtcattcagaactttctagaaaagagggggcaacttcctggtcattgccacaaaaagaggtgataacttctggtcattgccatgacatttgtaaactgtcttggtgctgatgagagcatcttatactaacgagcactgggagcaactagaagctgcctttgagccacctgctgttttttgccagtttcttcactgcgtcctgttttgaccagatcctggcttggtcagcagggttgtgactggaaagcaagtcctcccagcctcctt-ctcaACTGCACgtttctcatgcttcttagagatcactgtcctttgttgcctgatgtccatgccatgttgttctttcatg-----attttggttgtttcaagcagaagattgttactccatttcaaccaaatgtaaaGCCCTTTAAAATCTCTTTCATTTTACACTGTGTTCTC---------------CAGATAAAATTCCTTTGACTTTCTGCAGTCTTTCTTTGAATAGTAAACCTAAAAATATACTTATTTTTGGATGTTTAAAAGATTTCTCTAGTTATTATAGTGCAAGTTCATTTTTATATTTCAATATCAGGCTTTCATTTTAATAGCAATATTATTGTCTACCTTATACTTACTCATATTACAACTTGTCTCAAAATGCTCTTTGAAGCCGTTTCTGAAGTTGAATCAGGAAATTATCTAGCAAAGGCCAAGAATTAGGATTATGGCTCTATTACAATAATAGAGTGTCACTACCATACTTCTTTATAAGGCAAAAATGTTACCCATATTGTGACTGAAATTCCCATAGTAATGTCTTCAA-----AAAGTAAAATAATGAGTACTTTAGTATTTTTTAAATTTACACAAGAA--ATTTTTTTAAAGTGTCATCATT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 94478061 1182 + 107442819 TGAAAGCTTTCTCAGAGCCATAAGATGGGCAATCTTAGGGCTCACTTTGACGCAGGGCAGCTGAGCCCCCAAATTGGAGTCTTACCCCAGGAAGGTTCTTGGCTTTACCTATGAAGgaattcaagggtgagccaggGGTATT-AGACAGCAATCTTTTATTGAACCAGAACTGTCCTCACAGAGCAGGGCTAACTCATAGGCAGTAC-CCCAAAGCATCTCTTGTGGGCTGTTGGCTACCTGTATTTTTACCTACTTTTACCCACctttaattatatgcaaaattAAGGGATGAATTAATGCAAATTAA-GGGCAGGTCATTCAGAACTTTCTAGAAAAGAGGGGGCAACTTCCTGGTCATTGCCACAAAAAGAGGTGATAACTTCTGGTCAttgccatgacatttgtaaaTTGTCTTGGTGCTGATGAGAGTATCTTATACTAACGAGCACTGGGAGCAACTAGAAGGTGCCTTTGAGCCACCTGCTGGTTTTTGCCAGTTTCTTCACTGCATCCTGTTTTGACCAGATCCTGGCTTGGTCAGCAGGGTTGTGACTGGAAAGCAAGTCCTCCCAGCCTCCTT-CTCAACTGCACGTTTCTCATGCTTCTTAGAGATCACTGTCCTTTGTTGCCTGATGTCCATGCCATGTTGTTCTTTCATG-ATTTATTTTGGTTGTTTCAAGCAGGAAATTGTTACTCCATTTCAACCAAATGTAAAGCCCTTTAAAATCTCTTTCATTTTACACTGTGTTCTC---------------CAGATAAAATTCCTTTGACTTTCTGCAGTCTTTCTTTGAATAGTAAAcctaaaaatatacttatttttggaTGTTTAAAAGATTTCTCTAGTTATTATAGTGcaagttcatttttatatttcaatatcaGGCTTTCATTTTAATAGCAATATTATTGTCTACCTTATACTTACTCATATTACAACTTCTCTCAAAATGCTCTTTGAAGCCATTTCTGAAGTTGAATCAGGAAATTATCTAGCAAAGGCCAAGAATTAGGATTATGGCTCTATTACAATAATAGAGTGTCACTACCATACTTCTTTATAAGGCAAAAATGTTATCCATATTGTGACTGAAATTCCCATAGTAATGTCTTCAA-----AAAGTAAAGTAATGAGtactttagtattttttaaatttacacaagaa--attttttaaaagtatcatcATT i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 98689479 1171 + 108555830 tgaaagctctgtcagagccataaggtaggcgatcttagggctcacttT-acgcagggcagatgagcccccaaattggagtcttaccccaggaaggttcttggctttacccacgaaggaattcaagggtgagccaggggtatt-agacagcaatcttttattgaaccagaactgtcctcacagagcagggctaactcataggcagtac-cccaaagcatctcttgtgggctgttggctacctgtacttttac---cttttacccacttttaattatatgcaaaattaagggattaattaatgcaaattaaggggcaggtcattcagaactttctagaaaagagggggcaacttcctggtcattgccacaaaaagaggtgataacttctggtcattgccatgacatttgtaaactgtcttggtgctgatgagagtatcttatactaacgagcactgggagcaactagaagctgcctttgagccaccagctgggttttgccagtttcttcactgcgtcctgttttgaccagatcctggcttggtcagcaggtttgtgactggaaagcaagtcctcccagcctcctt-ctcaACTGCACgtttctcatgcttcttagagatcactgtccttcgttgcctgatgtccatgccatgttgttctttcatg-atttattttggttgtttcaagcaggagattgttactccatttcaaccaaaTTTAAAGCCCTTTAAAATCTCTTTCATTTTACACTGTGTTCTC---------------CAGATAAAATTCCTTTGACTTTCTGCAGTCTTTCTTTGAATAGTAAACCTAAAAATATACTTATTTTTGGATGTTTAAAAGATTTCTCTAGTTATTATAGTGCAAGTTCATTTTTATATTTCAATATCAGGCTTTCATTTTAATAGCAATATTATTGTCTACCTTATACTTACTCATATTACAACTTCTCTCAAAATGCTCTTTGAAGCCATTTCTAAAGTTGAATCAGGAAATTATCTAGCAAAGGCCAAGAATCAGGATTATGGCTCTATTACAATAATAGAGTGTCACTACCATACTTCTTTATAAGGCAAAAATGTTACCCATATTGTGACTGAAATTCCCATAGTAATGTCTTCAA-----AAAG-----TAATGAGTACTTTAGTATTTTTTAAATTTATACAAGAA--AATTTTTTAAAGTATCATC--- i chlSab2.chr12 C 0 C 0 s calJac3.chr1 77091788 1161 + 210400635 tgaaagctttctcagagccataaggtgggcaatcttagggcttactttgatgcagggcagctgagtccccagattggagtcttagcctgggaaagttcttggttttacccaggaaggaattcaa-ggtgagccagtggtattcagacagtaatcttttattg-accagaactgtcctcatggagcagggttaactcataggcagtgcacccaaagcagcttttgtgagctgtcggctagctgtgtttctacccacttttacccaattttaattacatgcaaaattaaggagtgaattaatgcaaattaaggggcaggtcattcagaactttctagaaaagagggggcaacttc--------------------------------ctggtcattgccatgacatttgtaagttatctgggtgctgatgagagtgtcttatgctaatgagcattgggagcagctagaagctgcctttgggccacctgctcgcttttgccagtttcttcactgtgtcctggtttgaccagatcctagctttgtcagcagggttgtgattggaaagcaaggcctgctagcctctttcctcaACTGCACgtttctcacccttcttagagatcactattctttgttgcctgatgtccatgcaatgctgttgtttcatgtgtttattttggttgtttcaagcaggagattgttattccatttcaaccaaaTTTAAGACTCTTTAAAA-----TTCATTTTACACTGTCTTCTCCGTTTGCAGAGGCATCAGATAAAATTCCTTTGACTTTCTGCAGTCTTTCTTTGAATAGCAAACCTAAAAATATACTTATTTTTGGATGTCTAAAAGATTTCTCTAGTTATTATAGTGCAAGTTCATTTTCATATTTCAACATCAGATTTTCATTTTAATAGCAATATTATTTTCTACCTTATG-TTACTCATATTACAACATCTCTCAAAATGTTCTGTGAAGCCATTTCTAAAGTTGAATCAGGAAATTATCTAGCAAAGGCCAGGAATTAGGATTATGGCTTTATTATAATGATAGAGTGTCACTACTATACTTCTTTATAAAGCAAAAATGTTACCAATATTGTGACTGAATTTTCCAGAGTAGTGTCTTCAA-----AAAGTAAAGTAATGAGTACTTTAGTATTTTTTAAATTTACACAAGAAATATTTTTTAAAAGTATCATT--- i calJac3.chr1 C 0 I 327 a score=1822529.000000 s hg38.chr9_GL383542v1_alt 13305 612 + 60032 GTTTTCCAGGTTTCCTTGAAGTCCTAACAAATATAAGAACATTTCCCATTATTCTAACTGTG--TACTTATATTCCCACTATTTTCCTCCATTATAGAAATGCCATACTGTCTTTAAGTGTTCTC-TTTTTTCTTTCATTATTAAAATAGTAAAAATGATATTCAAAGATTTCCATGACTGAGCCTCTACTGACTGTTTCACACTTTCTGCTCCACCCACATGGAGGATTCTAAGGCCCCCTCACGGGCCATACTTAACTGTGTCCACCTCCATGTTCTCTGTTATCCTCCTGAGATGAACCTCCTGCCCCTTTCCAATGTGTGCCATCCGATCTCACCCTTCCGTAAGGAGCCAGCCCCAGCACCAAATCCAGGAAGCCTTTTCAAGATTTCCCT----CCACCTCAACTCAACTCTCCCTCTTGGAAATTCCACTGAATTTTGTTTAAACTTGATTTTAACTTTGTTTTAGAGTCTTTTGTTTATATTTCTTACACTGCTAGATcagtgattctcaaag----tttagtgcgcatcaaaatcacccaaggagcttg-taaagactttgctgagccctactcccagagtctctgggaccaaagaatttctagcatgctctcag s panTro4.chr9 86957174 611 + 137840987 GTTTTCCAGGTTTCCTTGAAGTCCTAACAAATATAAGAACATTTCCCATTATTCTACCTGTG--TACTTATATTCCCACTATTTTCCTCCATTATAGAAATGGCATACTGTCTTTAAGTGTTCTC-TTTTTTCTTTCATTATTAAAATAGTAAAAATGATATTCAAAGATTTCCATGACTGAGCCTCTACTGACTGTTTCACACTTTCTGCTCCACCCACATGGAGGATTCTAAGGCCCCCTCACGGGCCATACTTAACTGTGTCCACCTCCATGTTCTCTGTTATCCTCCTGAGATGAACCTCCTGCCCCTTTCCAATGTGTGCCATCCGATCTCACCCTTCCGTAAGGAGCCAGCCCCAGCACCAAATCCAGGAAGCCTTTTCAAGATTTCCCT----CCACCTCAACTCAACTCTCCCTCTTGGAAATTCCACTGAATTTTGTTTAAACTTGATTTTAACTTTGTTTTAGAGTCTTTTGTTTATATTTCTTACACTGCTAGATcagtgactctcaaag----tttagtgcgcatcaaaatcacccaaggagcttg-taaagactttgctgagccctactcccagagtctctggggcc-cagaatttctagcatgctctcag i panTro4.chr9 C 0 I 199 s ponAbe2.chr9 83586768 613 + 135191526 GTTTTCCCGGTTTCCTTGAAGTCCTAACAAATATAAGAACATTTCCCATTATTCTACCTGTG--TACTTATATTCCCACTATTTTCCTCCATTATAGAAATGGCATACTGTCTTTAAGTGTTCCC-TTTTTTCTTTCATTATTAAAATACTAGTAAAGATATTCAAAGATTTCCATGACTGAGCCTCTACTGACTGTTTCACACTTTCTGCTCCACCCACATGGAGGATTCTAAGGCCCCCTCACGGGCCACACTTAACTGTGTCCACCTCCATGTTCTCTGTTATCCTCCTGAGATGAACCTCCTGCCCCTTTCCAATGTGTGCCATCCGATCTCATCCTTCCATAAGGAGCCAGCCCCAGCACCAAATCCAGGAAGACTTTTCAAGATTTCCCT----CCACCTCAACTCAACTTTCCCTCTTGGAAATTCCACTGAATTTTGTTTAAACTTGATTTTAACTTTGTTTTAGAGTCTTTTATT----TTTCTTACACTGCTAGAAcagtgattctcaaagtttatttaatgtgcatcaaaatcacccaaggagcttgttaaagactttgctgagcactactcccagagtctctggggcccaagaatttctagcatgctctcag i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76106739 614 - 122973662 GTTTTCTAGGTTTCCTTGAAGTCCTAACAAATATAAGAACATTTCCCATTATTTTACCTGTGTATACTTATATTCCCACTATTTTCCTCCATTATAGAAAAGGCATACTGTCTTTAAGTGTTCTC-TTTTTTCTTTCATTATTAAAATACTAGTAATGATATTCAAAGATTTCCATGACTGAGCCTCTACTGACTGTTTCACACTTTCTGTTCCACCCAGATGGAGGATTCTAAGGCCCCCTCACGGGCCACACTTAACTGTGTCCACCTCCATGTTCTCTGTTATCCTCCTGAGATGAACCTCCTGCCGCTTTCCAATGTGTGCCATCCAATCTCATCCTTCCATAAGGAGCCAGCCCCAGTACCAAATCCAGGAAGCCTTTTCAAGATTTCCCT----CCACCTCAACTCAACTTTCCCTCTTGGAAATTCCACTGAATTTTGTTTAAACTTGATTTTAACTTTGTTTTAGAGTCTTTTGTGTATATTTCTTACGCTGCTAGATAGgcgattctcaaag----tttactgtgcatcaaaatcacccaaggagcttg-ttaagactttgctgagccctactcccagagtctctggggcccaagaatttctagcatgctctcag i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 97545502 608 + 112192347 GTTTTCCAGGTTTTCTTGAAGTCCT----AATATAAGAACGTTTCCCATTATTCTACCTGTGTATACTCATATTCCCACTATTTTCCGCCCTTATGGAAATGGCATATTGTCTTTAAGTGTTCTC-TTTTTTCTTTCATTATTAGCGTACTAGTAATGATATTCAAAGATTTCCATGACTGAGCCTCTACTGGCTGTTTCACACTTTCTGCTCCACCCAAATGGAGGATTCTAAGGCCCCCTCACAGG--ACACTTAACTGTGTCCACCTCCGTCTTCTCTGTTATCCTCCTGAGATGAACCTCCTGCCACCTTCCAATGTGCGCCATCCAATCCCACCCTTCCGTAAGGAGCCAGCCCCAGTACCAAATCCAGGAAGCCTTTTCAAGATTTCCCT----CCACCTCAACTCAACTTTCCCTCTTGGAAATTCCACTGTATTTTGTTTAAACTTGATTTTAACTTTGTTTCAGAGTCTTTTGTTTATATTTCTTACACTGCTAGATcagtgattctcaaag----ttgagtgtgcatcaaaatcacccaaggagcttg-ttaagactttgctgagccctactcccagaatctctggggcccaataatttctagcatgctctcag i rheMac3.chr15 C 0 C 0 s macFas5.chr15 98765561 608 + 112612857 GTTTTCCAGGTTTTCTTGAAGTCCT----AATATAAGAACGTTTCCCATTATTCTACCTGTGTATACTCATATTCCCACTATTTTCCGCCCTTATGGAAATGGCATATTGTCTTTAAGTGTTCTC-TTTTTTCTTTCATTATTAGAGTACTAGTAATGATATTCAAAGATTTCCATGACTGAGCCTCTACTGGCTGTTTCACACTTTCTGCTCCACCCAAATGGAGGATTCTAAGGCCCCCTCACAGG--ACACTTAACTGTGTCCACCTCCGTCTTCTCTGTTATCCTCCTGAGATGAACCTCCTGCCACCTTCCAATGTGCGCCATCCAATCCCACCCTTCCGTAAGGAGCCAGCCCCAGTACCAAATCCAGGAAGCCTTTTCAAGATTTCCCT----CCACCTCAACTCAACTTTCCCTCTTGGAAATTCCACTGTATTTTGTTTAAACTTGATTTTAACTTTGTTTCAGAGTCTTTTGTTTATATTTCTTACACTGCTAGATcagtgattctcaaag----ttgagtgtgcatcaaaatcacccaaggagcttg-ttaagactttgctgagccctactcccagaatctctggggcccaataatttctagcatgctctcag i macFas5.chr15 C 0 C 0 s papAnu2.chr15 94479243 612 + 107442819 GTTTTCCAGGTTTCCTTGAAGTCCTAACAAACATAGGAACATTTCCCATTATTCTACCTGTGTATACTCATATTCCCACTATTTTCCTCCCTTATAGAAATGGCATATTGTCtttaagtgttctc-ttttttctttcattattaaagTACTAGTAATGATATTCAAAGATTTCCATGACTGAGCCTCTACTGGCTGTTTCACACTTTCTGCTCCACCCAAATGGAGGATTCTAAGGCCCCCTCACAGG--ACACTTAACTGTGTCCACCTCCATCTTCTCTGTTATCCTCCTGAGATGAACCTCCTGCCACCTTCCAATGTGCGCCATCCAATCCTACCCTTCCATAAGGAGCCAGCCCCAGGACCAAATCCAGGAAGCCTTTTCAAGATTTCCCT----CCACCTCAACTCAACTTTCCCTCTTGGAAATTCCACTGTATTTTGTCTAAACTtgattttaactttgttttagagtcttttgtttatatttcttacaCTGctagatcagtgattctcaaag----tttAGTGTGCATCAAAATCACCCAAGGAGCTTG-TTAAGACTTTGCTGAGCCCTACTCCCAGAGTCTCTGGGGCCCAATAATTTCTAGCATGCTCTCAG i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 98690650 608 + 108555830 GTTTTCCAGGTTTCCTTGAAGTCCTAACAAATATAAGAACGTTTCCCATTATTCTATCTGTGTATACTCATATTCCCACTATTTTCCTCCCTTATAGAAATGGCATATTTTCTTTAAGTGTTTTC-TTTTTTCTTTCATTATTAAAGTACTAGTAATGATATTCAAAGATTTCCATGACTGAGCCTCTACTGGCTGTTTCACACTTTCTGCTTCACCCAAATGGAGGATTCTAAGGCCCCCTCACAGG--ACACTTAACTGTGTCCACCTCCATCTTCTCTGTTATCCTCCTGAGATGAACCTCCTGCTGCCTTCCAATGTGCGCCATCCAATCCCACCCTTCCGTAAGGAGCCAGCCCCAGGACCAAATCCAGGAAGCCTTTTCAAGATTTCCCT----CCACCTCAACTCAACTTTCCCTCTTGGAAATTCCACTGTATTTTGTCTAAACTTGATTTTAAC----TTTTAGAGTCTTTTGTTTATATTTCTTACACTGCTAGATcagtgattctcaaag----tttagtgtgcatcaaaatcacccaaggagcttg-ttaagactttgctgagccctactcccagagtctctggggcccaataatttctagtatgctctcag i chlSab2.chr12 C 0 C 0 s calJac3.chr1 77093276 618 + 210400635 GTTTTCCAGGTTTCCTTGAGGATCTAACAAATATAAGAACTTTTCCCATTATTCTAACTGTGTATACTCATATTCTCACTCTTTTCCTCCATTATAGAAATGGCATATTGTCTTTAAGTATTCTCTTTTTTTCTTTCATTATTAAAATACTAGTAATGATATTCAAAGATTTCCATGACTGAGCCTCTACTGACTGTTTCACACTTTCTGTTCCACCCAAATGGAGGATTCTAAGGCCCCCTCACAGATCACACTTAACCGTGTCCACCTCCATGTTCTCTGTTACCCCTCTAAGATGGGTA-CCTGCTCACTCCCAATGTGCACCATCCAATCTCACCCTCCCATAAGGAGCCAGCCCCAACACCAAATACAGGAAGTCTTTTCAAGATTTCCCTCTTGCTACCTCAACTCAACTTTCCCTCTCAGAAATTCCACTGCATTTTGTTTAAACTTGATTTTAACTTTGTTTTGGAGTCTTTTGTTTATATTTCTTACACTTCTAGAGTagtaattctcaaag----tttagtgtgcatcaaaatcacccaacgagcttg-ttaagacactgctgagccctactcctagagtttctagggcgcaagaatttctagtatgctcttga i calJac3.chr1 I 327 C 0 a score=438907.000000 s hg38.chr9_GL383542v1_alt 13917 186 + 60032 ctgatgcagatcctgctggtccaaggagaacacttttcagaaccCTGTGGTCTAGACCCCTTGAAAGTAGTATCCATGTCTCATGCATC-TTAATTCCACAAAGTATCCAACAAAGTGACTTGCAAAGTGCTGTTCAATAGGTTAGCTTTATTAGTATTGAATTTCTGGACTTCAAAGGTGTATTTT s ponAbe2.chr9 83587381 186 + 135191526 ctgatgcagatcctgctggtccaaggagaacacttttcagaaccCCATAGTCTAGACCCCTTGAAAGTGGTATCCATGTCTCATGCATC-TTAATTCCACAAAGTATCCAACAAAGTGACTTGCAAAGCACTGTTCAATAGGATAGCTTTATTAGTATTGAATTTCTGGACTTCAAAGGTGTATTTT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76107353 186 - 122973662 ctgatgcagatcctgctggtccaaggagaatacttttcagaaccCCATGGTCTAGACCCCTTGAAAGTAGTATCCATGTCTCATGCATC-TTAATTCCACAAAGTATCCAACAAAGTGACTTGCAAAGGGCTGTTCAATAGGATAGCTTTATTAGTATTAAATTTCTGGATTTCAAAGGTGTATTTT i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 97546110 186 + 112192347 ctgatgcagatcatgctggtccaaggaaaacacttttcacaaccacATGGTCTAGATCCCTTGAAAGTAGTGTCCATGTCTCATGCATC-TTAATTCCACAAAGTATCCAACAAAGTGACTTGCAAAGCGCTGTTCAATAGGATAGCTTTATTAGTATTGAATTTCTGGACTTCGAAGATGTATTTT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 98766169 186 + 112612857 ctgatgcagatcatgctggtccaaggaaaacacttttcacaaccacATGGTCTAGATCCCTTGAAAGTAGTGTCCATGTCTCATGCATC-TTAATTCCACAAAGTATCCAACAAAGTGACTTGCAAAGCGCTCTTCAATAGGATAGCTTTATTAGTATTGAATTTCTGGACTTCGAAGATGTATTTT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 94479855 186 + 107442819 CTGATGCAGATCCTGCTGGTCCAAGGAAAACACTTTTCACAACCCCATGGTCTAGACCCCTTGAAAGTAGTGTCCATATCTCATGCATC-TTAATTCCACAAAGTATCCAACAAAGTGACTTGCAAAGCGCTATTCAATAGGATAGCTTTATTAGTATTGAATTTCTGGACTTCGAAgatgtatttt i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 98691258 186 + 108555830 ctgatgcagatcatgctgatccaaggaaaacattttTCACAACCCCACGGTCTAGACCCCTTGAAAGTAGTGTCCATGTCTCATACATC-TTAATTCCACAAAGTATCCAACAAAGTGACTTGCAAAGCGCTGTTCAATAGGATAGCTTTATTAGTACTGAATTTCTGGACTTCGAAGatgtatttt i chlSab2.chr12 C 0 I 319 s calJac3.chr1 77093894 186 + 210400635 ttgacacagatcctgctggtccaaggagaacacttttcagaaccCCATGGTCTAGACCCCTTGAAAGTAGCATCCATCTCTCATGCATCTTTAATTCCACAAAGTATTCAACAAAGTGACTTGCAAAGAGCTGTTCGA-AGGATACCTTTATTAGTATTGAATTTCTGGACTTCAAAGGTGTATTTT i calJac3.chr1 C 0 C 0 e panTro4.chr9 86957785 199 + 137840987 I a score=20237.000000 s hg38.chr9_GL383542v1_alt 14103 18 + 60032 AGAAAAT-----------------------------------------------------------------------------------------------------GTCGTATGTAT s ponAbe2.chr9 83587567 18 + 135191526 AGAAAAT-----------------------------------------------------------------------------------------------------GTCATATGTAT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76107539 18 - 122973662 AGAAAAT-----------------------------------------------------------------------------------------------------GTCATATATAT i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 97546296 18 + 112192347 AGAAAAT-----------------------------------------------------------------------------------------------------GTCATATGTAT i rheMac3.chr15 C 0 I 319 s macFas5.chr15 98766355 18 + 112612857 AGAAAAT-----------------------------------------------------------------------------------------------------GTCATATGTAT i macFas5.chr15 C 0 I 319 s papAnu2.chr15 94480041 18 + 107442819 agaaaat-----------------------------------------------------------------------------------------------------gtcaTATGTAT i papAnu2.chr15 C 0 I 319 s chlSab2.chr12 98691763 18 + 108555830 agaaaat-----------------------------------------------------------------------------------------------------gtcatatgtat i chlSab2.chr12 I 319 C 0 s calJac3.chr1 77094080 119 + 210400635 AGAAAATTGAATTTCTGCTCCATTTGGGTGGAGCAGAAAGTGTGAAACAGTCAGTAGAGAGAGGCTCAGTCATGGAAATCTTCAAATATCATTACTAGTATTTCACTAGTCATATGCAT i calJac3.chr1 C 0 C 0 e panTro4.chr9 86957785 199 + 137840987 I a score=233420.000000 s hg38.chr9_GL383542v1_alt 14121 125 + 60032 CAATGTAATAAAAAAGAATCACAGTTACAATGAAGAACCCAAAAGAAGTT-----GAAAAAAGAGCATAGGATCTGTTTATAAGTTTGCCTGCTTCATCAGTGAATAAAGCAATGGGGGTTGGGGGGAGG s ponAbe2.chr9 83587585 125 + 135191526 CAATGTAATAAAAAAGAATCACAGTTACAATGAAGAACCCAAAAGAAGTT-----GAAAAAAGAGCATAGGATCTGTTTATAAGTTTGCCTGCTTCATCAGTCAATAAAGCAATGGGGGTTGTGGGGAGG i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76107557 130 - 122973662 CAATGTAATAAAAAACAATCACAGTTACAATAAAGAACCCAAAAGAAGTTAAAAAAAAAAAAGAGCATAGCATCTGTTTATAAGTTTGCCTGCTTCATCAGTGAATAAAGCAATGAGGGTTGGGGGACGG i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 97546633 115 + 112192347 AAATGTAAT-AAAAAAAGTCACAGTTACAATGAAAAACCCAAAAGAATTT------TTAAAAGAGCATAGGATCTGTTTATAAGTTTGC--------TCAGTGAATAAAGCAATGGGGATTGGGGTGAGG i rheMac3.chr15 I 319 C 0 s macFas5.chr15 98766692 116 + 112612857 AAATGTAATAAAAAAAAGTCACAGTTACAATGAAAAACCCAAAAGAATTT------TTAAAAGATCATAGGATCTGTTTATAAGTTTGC--------TCAGTGAATAAAGCAATGGGGATTGGGGTGAGG i macFas5.chr15 I 319 C 0 s papAnu2.chr15 94480378 124 + 107442819 gaatgtaataaaaaaaagtcacagttacaatgaaaaacccaaaagaattt------ttaaaagagcatagGATCTGTTTATAAGTTTGCATGCTTCGTCAGTGAATAAAGCAATGGGGATTGGGGTgagg i papAnu2.chr15 I 319 C 0 s chlSab2.chr12 98691781 118 + 108555830 gaatgtaataAAAAAAAGTCACAGTTACAATGAA------AAAAGAATTT------TTAAAAGAGCATAGGATCTGTTTATAAGTTTGCATGCTTCATCAGTGAATAAAGCAATGGGGATTGGGGTGAGG i chlSab2.chr12 C 0 C 0 s calJac3.chr1 77094199 125 + 210400635 TAATGTAATAAAAAACAACCACAGTTACAATGAAGAACCCAAAAGAAGTA---AAAAAAAATGAGCACAAGATCTGTTTATAAGTTTGTCTGCTTCATCAGTGAATAAAGCAAAGGGGATAGGGGAGA-- i calJac3.chr1 C 0 C 0 e panTro4.chr9 86957785 199 + 137840987 I a score=4348699.000000 s hg38.chr9_GL383542v1_alt 14246 1498 + 60032 caggcgcagtggctcacacctgtaatcccagcactttgggaggccaaggcaggtggatct--cctgaggtcaggagttcgagaccagactggccaacatggtgaaacaccgtctctactaacaatacaaaaatta-gctgggcctgatggcaaatgcctgtaatcccagctactcgggaggctgaggtacgagaattgcttgaacgcgggaggtggaggttgcagtgacccgatgtcacaccact--------gcctaagccacagcgtgagactctgtctc----aaaaaaaaaaaaaaaaaaaaaaaaGCAAAGGGGGGAAGTACGAAGTTGGGTGATTTCCAATATCATATGTACCAAAGTTTCTGGTTAATTATTCCAGTTTTTGCACAGAGAAAAG--GTTTTTTTGTTCTTACCATTGCATAGTTCTAGGGATTAGTAAGTTCAATATGAGTGTTTTGTTCATTATTACTTGGGAAAAATCAATAGAAAATCTGGTGTTAAAAAACATCAGATACAAAATTTAAAGCTCAACAAAAGACAGCCATGCGTAGGGCAGTGGGGAGGTGCAGAACTCTGAGGATGAGGTTGTCTGGGTGTGAGTCCTGGCTGCATCTTGATGCCTGTGTGCATTTGGGTGCTCTCCTCTGTAGAAGAGCGCTAAAAATAATCATGCATGCTTCCGAGGgtaaagttctcaaaacagtgcctggcatacagCTTTAGTTAAAAATAAACTAGCAGAGAGTCTGCTTAGGTTAGTCTATGCTTTCAGTGACCGTATTTTTCCAACTAAAATTTAGAACAAGAGCGATACTTGGGCCACTTACGGGAATAAAAGTTTCTCAAAATAATCCTGTGATTCCTCAGATATTTCTAGAGTTTATAGAATCCAAAGGCAGTATATTACATAGAAAAAAAAATGTTTAGACACTCCAGGTTGTCTAGTATCCATATTTGTATATTCTCAGCCCCCATCTTCCATTTCCCCCAAATATCATATATCTCCAGGGAAAGGAAACCAGCGTATTCTCCTCCCAAATTGAGAGTAGGCAGGAATAACTCACATTTTCATCAG-TTTCTCCAGTCTTTATATGGGTAGATTGATCTAGAATGGAAAGGATTTCATGGTAACGATTGTAGGGAAGTTTAGAtg---ttttcccagaaggtttgatcattttagtttataaaacaaataggttaacagaaaagaaaaaaggcttactggccgagtgtggtggctcacgcctataatcccaatactttgggaggccaaggc-ggcggatcacttgaggtcaggagttcaagaccaccctggccaacatggtgaaaccctgtctctactaaaaatac-aaaaattagctgggcctggcagtgcacacctgtaaccccagctactccagaggctgaggtgggagaatcgcttgaacccaggaggcggaagttccagtaagccgagatcttgccactgcactccagcctgggtgac-acagtgagattctgtctcaaaaa s panTro4.chr9 86957984 1488 + 137840987 caggcgcagtggctcacacctgtaatcccagcactttgggaggccaaggcaggtggatct--cctgaggtcaggagttcgagaccagcctggccaacatggtgaaacaccgtctctactaacaatacaaaaatta-gctgggcctgatggcaaatgcctgtaatcccagctactcgggaggctgaggtacgagaattgcttgaacgcgggaggtggaggttgcagtgacccgacgtcacaccact--------gcctaggccacagcgtgagactctgtctc----aaaaaaaaaaaaaa----------GCAAAGGGGGGAAGTACGAAGTTGGGTGATTTCCAATATCATATGTACCAAAGTTTCTGGTTAATTATTCCAGTTTTTGCACAGAGAAAAG--GTTTTTTTGTTCTTACCATTGCATAGTTCTAGGGACTAGTAAGTTCAATATGAGTGTTTTGTTCATTATTACTTGGGAAAAATCAATAGAAAATCTGGTGTTAAAAAACATCAGATACAAAATTTAAAGCTCAACAAAAGACAGCCATGCATAAGGCAGTGGGGAGGTGCAGAACTCTGAGGATGAGGTTGTCTGGGTGTGAGTCCTGGCTGCATCTTGATGCCTGTGTGCATTTGGGTGCTCTCCTCTGTAGAAGAGCGCTAAAAATAATCATGCATGCTTCCGAAGgtaaagttctcaaaacagtgcctggcatacagCTTTAGTTAAAAATAAACTAGCAGAGAGTCTGCTTAGGTTAGTCTATGCTTTCAGTGACCGTATTTTTCCAACTAAAATTTAGAACAAGAGTGATACTTGGGCCACTTACGAGAATAAAAGTTTCTCAAAATAATCCTGTGATTCCTCAGATATTTCTAGAGTTTATAGAATCCAAAGGCAGTGTATTATATAGAAAAAAAAATGTTTAGACACTCCAGGTTGTCTAGTATCCATATTTGTATATTCTCAGCCCCCATCTTCCATTTCCCCCAAATATCATATATCTCCAGGGAAAGGAAACCAGAGTATTCTCCTCCCAAATTGAGAGTAGGCAGAAATAACTCACATTTTCATCAG-TTTCTCCAGTCTTTATGTGGGTAGATTGATCTAGAATGGAAAGGATTTCATGGTAACGATTGTAGGGAAGTTTAGATG---TTATCCCAGAAGGTTTGATCATTTTAGTTTATAAaacaaataggttaacagaaaagaaaaaaggcttactggccgggtgtggtggctcacgcctataatcccaatactttgggaggccaaggc-ggcggatcacttgaggtcaggagttcaagaccaccctggccaacatggtgaaaccctgtctctactaaaaatac-aaaaattagctgggcctggtggtgcacacctgtaaccccagctactcaggaggctgaggtgggagaatcgcttgaacccaggaggcggaagttgcagtaagccgagatcttgccactgcactccagcctgggtgac-acagtgagattctctctcaaaaa i panTro4.chr9 I 199 C 0 s ponAbe2.chr9 83587710 1474 + 135191526 caggctcagtggctcacacctgtaaccccagcactttgggaagccaaggcaggtggatca--cctgaggtcaggagttcgagaccagcctggccaacacagtgaaaccctgtctctactaacaatacaaaaatta-gccgggcgtgatggccaatgcctgtaatcccaactactcgggaggctgaggtacgagaatcgcttgaacgcgggaggtggaggttgcagtgacccgatgtcgtgccact--------gcctaggcaacagcgtgagactctgtctc----aaaaaaaaaaa-------------GCAAAGAGGGGAAGTATGAAGTTGGGTGATTTCCAATATCATATGTACCAAAGTTTCTGGTTAATTATTCCAGTTTTTGCACAGAGAAAAG--GTTTTTTTGTTCTTACCATTGCATAGTTCTAGTGATTAGTAGGCTCAATATGAGTGTTTTGTTCATTATTACTTGGGAAAACTCAATAGAAAATCTGATGTTAAAAAACATCAGATACAAAATTTAGAGCTCAACAAAAGACAGCCATGTGTAGGGCAGTGGGGAGGTGCAGAACTCTGAGGATGAGGTTGTCTGGGTGTGAGTCCTGGCTGCATCTTGATGCCTGTGTGCACTTGGGTGCTCTCCTCTGTAGAGGAGCTCTAAAAATAATCATGCATGCTTCCAAGGgtaaagtcctcaaaacagtgcctggcatacagCGTTAGTTAAAAATAAACTAGCAGAGAGTCTGCTTAGGTTAGTCTATGCTTTCAGTGACCGTATTTTTCCAACTAAAATTTAGAACAAGA-----------GCCACTTACGGGAATAAAAGGTTCTCAAAATAATCCTGTGATTCCTCAGATATTTCTAGAGTTTATAGAATCCAAAGGCAGTATATTACATAG-AAAAAAAATGTTTAGACACTCCAGGTTGTCTAGTATCTATATTTGTATATTCTCAGCCCCCATCTTCCATTTCCCCCAAATATCGTATATCTCCAGGGAAAGGAAACCAGAGTATTCTCCTCCCAAATTGAGAGTAGGCAGGAATAACTCACATTTTCATCAG-TTTTTCCAGTCTTTATGTGGGTAGATTGATCTAGAATGGAAAGGATTTCATGGTAACGATTGTAGGGAAGTTTAGAtg---ttttcccagaaggtttgatcattttagtttataaaacaaataggttaacagaaaagaaaaaaagcttactggctgggcgtggtggcttacgcctgtaatcccaatactttgggaggccaaggcgggcaaatcacttaagatcaggagttcaataccaccctggccaacatggtgaaaccctgtctctactaaaaatac-aaaagttagctgggcctggtggtgcacacctgtaaccccagctactcgggaggctgaggtgggagaatagcttgaacccaggaggtggaagttgcagtgagccgagatcttgccactgcactccagcctgggtgac-acagtgagattctatctcaaaaa i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76107687 1493 - 122973662 caggcgcagtggctcacacctgtaatcccagcactttgggaggccaaggcaggtggatca--cctgaggtcaggagttcgagaccagcctggccaacatggtaaaaccctgtctctactaacaatacaaaaatta-gctgggcgtgatggcaaatgcctgtaatcccagctactcgggaggctgaggtacgagaatcgcttgaacgcgggaggtgcaggttgcagtgactcgatgtcgcgccact--------gcctaggcaacagcgtgagactctgtctc----aaaaaaaaaaaaaaaaaaa-----acaaaGGGGGGAAGTATGAAGTTGGGTGATTTCCAATATCATAGGTACCAAAGTTTCTGGTTAATTATTCCAGTTTTTGCACAGAGAAAAG--GTTTTTTTGTTCTTACCATTGCATAGTTCTAGTGATTAGTAGGTTCAATATAAGTGTTTTGTTAATTATTACTTGGGAAAAATCAATAGAAAATCTGATGTTAAAAAATATCAGATACGAAAGTTAAAGCTAAACCAAAGACGGCCATGCGTAGGGCAGTGGGGAGGTGCAGAACTCTGACGACGAAGTTGTCTGGGTGTGAGTCCTGGCTGCATCTTGATGCCTGTGTGCACTTGGGTGCTCTCCTCTGTAGAGGAGCTCTAAAAATAATCATGCATGCTTCCAAGGgtaaagtcctcaaaacagtgcctggcatacagCGTTAGTTAAAAATAAACTAGCAGAGAGTCTGCTTAGGTTAGTCTATGCTTTCAGTGACCATATTTTTCCAACTAAAATTTAGAACAAGAGTGATACTTGGGCCACTTATGGGAATAAAAGGTTCTCAAAATAATCCTGTGATTCCTCAGATATTTTTAGAGTTTATAGAATCCAAAGGCAGTATATTATATAG-AAAAAAAATGCTTAGACACTCCAGGTTGTCTAGTATCCATATTTCTATATTCTTAGCTCCCATCTTCCATTTCCTCCATATATCGTATATCTCCAGGGAAAGGAAACCAGAGTATTCTCCTCCCAAATTGAGAGTAGGCAGGAATAATTCACATCTTTATCAG-TTTTTCCAGTCTTTATGGGGGTAGATTGATATAGAATGGAAAGGATTTCATGGTAACGATTGTAGGGAAGTTTAGAtg---ttttcccagaaggtttgatcattttagtttataaaacaaatagattaacagaaaagaaaaaaagcttactggccgggagtggtggctcacacctgtaatcccaatactttaggaggccaaggcgggctgatcacttgaggacaagagttcaagaccagcctggccaacatggtgaaaccctgtctctactaaaaatac-aaaaattagctgggcctggcagtgcacacctgtaaccccagctactcgggaggctgaggtaggagaatcgcttgaacccaggaggcggaggttgcagcgagctgagatcttgccactgcactccagcctgggtgac-acagtgaggctctgtctcaaaaa i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 97546748 1491 + 112192347 caggcgcagtggctcactcctgtaatcccagcactttgggatgccaaggcgggtggatca--cctgaggtcaggagttcgagaccagcctggccaacatggtgaaaccctgtctctactcacaatacaaaaattc-gctgagtgtgatggcacatgcctataatcccagctactcaggaggctgaggtacgagaatcggttgaacgcgggaggcggaggttgcagtgactcgagattgcgccact--------gcctaggcaacagagtgacactctgtctc----aaaaaaaaaaaaaaa---------GCCAAGGGGGGAAGTATGAAGCTGAGTGATTTCCAATATCATATGTACCAAAGTTTCTGGTTAATTATTCCAG-TTTTGCATAAAGAAAAG--TTTTTTTTTTTCTTACCATTGCATAGTTCTAGTGATTAGTAGGTTCAGTATGCCTGCTTTGTTAATTATTACTTGGGAAAAATCAATAGAAAATCTGATGTTAAAAAACATCAGATACAAAAGTTAAAGCTAAACAAAAGACAGCCATGCGTAGGGCAGTGGGGATGTGCAGAACTCGGAGGATGAGGTTGTCTGGGTGTGAGTCCTGGTTGCATCTTGATGCCTGTGTGCACTTGGGTGCTCTCCTCTGTAGAGGAGCTCTAGAAATAATCATTCATGCTTCCAAGGgtaaagtcctcacaacagtgcctggcatatagCGTTAGTTAAAAATAAACTAGCAGAGAGTCTGCTTAGGTTAGTCTATGCTTTCAGTGACCATATTTTTCCAACTAAAATTTAGAACAAGAGTGATATTTGGGCCACTTATGGGAATAAAAGGTTATCAAAATAATCCTCTGATTCCTCAGATATTTCTAGAGTTTATAGAATCCAAAGGCAGTATATTATGTAG-AAAAAAAATGTTTAGACACTCCAGATTGTCCAGTATCCATATTTGTATATTCTCGGCCTCCATCTTCCATTTTTCCCAAATATCGTATATCTCCAGGAAAAGGAAACCAGAGCATTCTCCTCCCCAATTGAGAGTAGGAAGGAATAACTCACATCTTCATCAG-TTTTTCCAGTCTTTATGTGGGTAGATTAATCTAGAATGGAAAGGATTTCATGGTAACGATTGTAGGGAAGTTTAGATGCTATTTTTCCAGAAGGTTTGATCATTTTAGTTTATAAaacaaatagattaacagaaaagaaaaatagcttactggccgggtgtggtggctcacacctgtaatcccaatactttgggagaccaaggcgggtggatcacttgaggtcaggagttcaagaccaccccggccaacatggtgaaactctgtctctactaaaaatac-aaaaattagctgggcctggcagtgcacgcctgtaagcccagctactctggaggctgaggtgggagaatcgcttgaacccaggaggcagaggttgcagtgagctgagatctccccactgcactccagcctgggtgac-agagtgagactctgtctcaaaaa i rheMac3.chr15 C 0 C 0 s macFas5.chr15 98766808 1492 + 112612857 caggcgcagtggctcactcctgtaatcccagcactttgggatgccaaggcgggtggatca--cctgaggtcaggagttcgagaccagcctggccaacatggtgaaaccctgtctctactcacaatacaaaaatta-gctgagtgtgatggcacatgcctataatcccagctactcaggaggctgaggtacgagaatcggttgaacgcgggaggcggacgttgcagtgactcgagattgcgccact--------gcctaggcaacagagtgacactctgtctc----aaaaaaaaaaaaaaG---------CCAAGAGGGGGAAGTATGAAGCTGAGTGATTTCCAATATCATATGTACCAAAGTTTCTGGTTAATTATTCCAG-TTTTGCACAAAGAAAAG-TTTTTTTTTTTTCTTACCATTGCATAGTTCTAGTGATTAGTAGGTTCAGTATGCCTGCTTTGTTAATTATTACTTGGGAAAAATCAATAGAAAATCTGATGTTAAAAAACATCAGATACAAAAGTTAAAGCTAAACAAAAGACAGCCATGCGTAGGGCAGTGGGGATGTGCAGAACTCGGAGGATGAGGTTGTCTGGGTGTGAGTCCTGGTTGCATCTTGATGCCTGTGTGCACTTGGGTGCTCTCCTCTGTAGAGGAGCTCTAGAAATAATCATGCATGCTTCCAAGGgtaaagtcctcacaacagtgcctggcatatagCGTTAGTTAAAAATAAACTAGCAGAGAGTCTGCTTAGGTTAGTCTATGCTTTCAGTGACCATATTTTTCCAACTAAAATTTAGAACAAGAGTGATATTTGGGCCACTTATGGGAATAAAAGGTTATCAAAATAATCCTCTGATTCCTCAGATATTTCTAGAGTTTATAGAATCCAAAGGCAGTATATTATGTAG-AAAAAAAATGTTTAGACACTCCAGATTGTCCAGTATCCATATTTGTATATTCTCGGCCTCCATCTTCCATTTTTCCCAAATATCGTATATCTCCAGGAAAAGGAAACCAGAGCATTCTCCTCCCCAATTGAGAGTAGGAAGGAATAACTCACATCTTCATCAG-TTTTTCCAGTCTTTATGTGGGTAGATTAATCTAGAATGGAAAGGATTTCATGGTAACGATTGTAGGGAAGTTTAGATGCTATTTTTCCAGAAGGTTTGATCATTTTAGTTTATAAaacaaatagattaacagaaaagaaaaatagcttactggccgggtgtggtggctcacacctgtaatcccaatactttgggagaccaaggcgggtggatcacttgaggtcaggagttcaagaccaccccggccaacatggtgaaactctgtctctactaaaaatac-aaaaattagctgggcctggcagtgcacacctgtaaccccagctactctggaggctgaggtgggagaatcgcttgaacccaggaggcagaggttgcagtgagctgagatctcaccactgcactccagcctgggtgac-agagtgagactctgtctcaaaaa i macFas5.chr15 C 0 C 0 s papAnu2.chr15 94480502 1495 + 107442819 caggcgcagtggctcactcccgtaatcccagcactttgggatgccaaggcgggtggatca--cctgaggtcaggagttggagaccagcctgaccaacatggtgaaaccctgtctctactcacaatacaaaaatta-gctgggtgtgatggcacatgcctataatcccagctactcaggaggctgaggtaccaGAATCGGTTGAAcgcgggaggccgaggttgcagtgactcgagattgggccact--------gcctaggcaacagagtgagactctgtctcaaaaaaaaaaaaaaaaaag---------ccaagaggGGGAAGTATGAAGCTGGGTGATTTCCAATATCATATGTACCAAAGTGTCTGGTTAATTATTCCAG-TTTTGCACaaagaaaag--gtttttttgttcttACCATTGCATAGTTCTAGTGATTAGTAGGTTCAGTATGCCTGCTTTGTTAATTATTACTTGggaaaaatcaatagaaaatctgatgttaaaaaacatcagatacaaaagttaaagctaaacaaaaGACAGCCATGCGTAGGGCAGTGGGGATGTGCAGAACTCTGAGGATGAGGTTGTCTGGGTGTGAGTCCTGGCTGCATCTTGCTGCCTGTGTGCACTTGGGTGCTCTCCTCTGTAGAGGAGCTCTAGAAATAATCATGCATGCTTCCAAGGGTAAAGTCCtcacaacagtgcctggcatatagcgttagttaaaaataaactagCAGAGAGTCTGCTTAGGTTAGTCTATGCTTTCAGTGACCATATTTTTCCAACTAAAATTTAGAACAACAGTGATATTTGGGCCACTTATGGGAATAAAAGGTTATCAAAATAATCCTCTGATTCCTCAGATATTTCTAGAGTTTATAGAATCCAAAGGCAGtatattatatag--aaaaaaatgtttagacACTCCAGATTGTCCAGTATCCATATTTGTATATTCTCAGCCTCCATCTTCCATTTTTCCAAAATATCGTATATCTCCAGGGAAAGGAAACCAGAGCATTCTCCTCCCAAATTGAGGGTAGGCAGGAATAACTCACATCTTCATCAG-TTTTTCCAGTCTTTATGTGGGTAGATTAATCTAGAATGGAAAGGATTTCATGGTAACGATTGTAGGGAAGTTTAGATGCTATTTTTCCAGAAGGTTTGATCATTTTAGTTTATAAAACGAATAgattaacagaaaagaaaaatagcttactggctgggtgtggtggctcacacctgtaatcccaatactttgggagaccaaggcgggtggatcacttgaggtcaggagttcaagaccaccccggccaacatggtgaaactctgtctctactaaaaatac-aaaaattagctgggcctggcagtgcacacctgtaaccccagctactcaggatgctgaggcaggagaattgcttgaacccgggaggcggaggttgcagtgagccaagatcgcgccattgcactccagcctgggtgacaagagcaaaactccatctcaaaaa i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 98691899 1489 + 108555830 caggcgcagtggctcactcctgtaatctcagcactttgggaggccaaggcgggtggatca--cctgaggtcaggagttcgagaccagcctggccaacatggtgaaaccctgtctctactcacaattcaaaaatta-gctgggtgtgatggcacatgcctataatcccagctactcaggaggctgaggtacgagaatcggttgaacgcgggaggcggaggttgcagtgactcgagattgtgccact--------gcctaggcaacagagtgacactctgtctc---aaaaaaaaaaaaaaaG---------CCAAGAGGGGGAAGTATGAAGCTGAGTGATTTCCAATATCATATGTACCAAAGTTTCTGGTTAATTATTCCAG-TTTTGCACAAAGAAAAG--GTATTTTTGTTCTTACCATTGCATAGTTCTAGTGATTAGGAGGTTCAGTATGCCTGCTTTATTAATTATTACTTGGGAAAAATCAATAGAAAATCTGATGTTAAAAAACATCAGATACAAAAGTTAAAGCTAAACAAAAGACAGCCATGCGTAGGGCAGTGGGGATGTGCAGAACTCTGAGGATGAGGTTGTCTGGGTGTGAGTCCTGGTTGCATCTTGATGCCTGTGTGCACTTGGGTGCTCTCCTCTGTAGAGGAGCTCTAGAAATAATCATGCATGCTTCCAAGGgtaaagtcctcacaacagtgcctggcatatagCGTTAGTTAAAAATAAACTAGCAGAGAGTCTGCTTAGGTTAGTCTATGCTTTCAGTGACCATATTTTTCCAACTAAAATTTAGAACAAGAGTGATATTTGGGCCACTTATGGGAATAAAAGGTTATCAAAATAATCCTCTGATTCCTCAGATATTTCTAGAGTTTATAGAATCCAAAGGCAGTATATTATATAG--AAAAAAATGTTTAGACACTCCAGATTGTCCAGTATCCATATTTGTATATTCTCGGCCTCCATCTTCCATTCTTCCCAAATATCGTATATCTCCAGGGAAAGGAAACCAGAGCATTCTCCTCCCAAATTGAGAGTAGGCAGGAATAACTCACATCTTCATCAG-TTTTTCCAGTCTTTATGTGGGTAGATTAATCTAGAATGGAAAGGATTTCATGGTAACGATTGTAGGGAAGTTTAGATGCTATTTTTCCAGAAGGTTTGATCATTTTAGTTTATAAaacacatagattaacagaaaagaaaaatagcttactggccgggtgtggtgg--cacacctgtaatcccaatactttgggagaccaaggcaggtggatcacttgaggtcaggagttcaagaccaccccggccaacatggtgaaactctgtctctactaaaaatac-aaaaattagctgggcctggcagtgcaaacctgtaaccccagctactctggaggctgaggtgggagaatcgcttgaacccaggaggcggaggttgcagtgagccgagatctcaccactgcactccagcctaggtgac-agagtgagactctgtctcaaaaa i chlSab2.chr12 C 0 I 8 s calJac3.chr1 77094324 1476 + 210400635 cgagtgcagtggctcacacctgtaatcccagcaccttgggaggccaaggagggttgttcactcctgaggtcaggagtttgaaaccagcctggccaacatgatgaaaccccgtctctattaaaaatacaaaaattaggctgggcatggtggcatgtgcctataatcccagctactcaggaggatgaggtac--aaattgcttgaacccaggaggcagatgttgcagtgacctgagatagtgccattatactccagcctgggtaacaaagtgaga--ctgtctc----aaaaaCA-----------------GCAA-GGGAGGAAGTATGAAGTTGGGTGATTTCCAATATCATATGTACCAAAGTTTCTGGTTAGTTATTCCAGTTTTTGCACAAAGAAAAGATTTTTTTTTGTTCTTACCATTGTGTAGTTCTAGTGATTAGTAGGTTCAGTATGAGTGTTTTGTTAATTATTACTTGGGAAAA-TCAATAGAAAATCTGATGTTAAAAAGCATCAGATGCAAAATTTAAAGCCAAACAAAAGACAGCCATGTGTAGGGCAATGGGGAGGTGCAGAACTCTGAGGACAAGGTTGTATGAGTGTGAGTTCTGGCTGTGTTTTGATGCCTGTGTGGACGTGGGTGCTCTCCTCTGAAGAGGGGCTCTAAAAATAATCATGCATACTTCCAAGGgtaaagtcctcaaaacagtgcctggcacacagCGTTTGTTAAAAATAAACTAGCAGAGAGCCTGCTTAGGTTAGTCTATGCTTTCAGCGACCATATTTTTCCAACTGAAATTTAGAACGAGAGTGATACGTGGGCCACGTCTGGGAATAAAAGGTTCTCAAAATAATCCTGTGATTCCCCAGATATTTCTAGAGTTTATAGAAGCCAAAGGCTATATATTTTATAG--AAAAAAATGTTTACATACTTCAGGTTGTCTGGTATCCATATTTGTATATTCTCAGCCCTCATCTTCCATTTCCTCCAAATATCCTATATCTTCAGGGAAAGGAAACCAGAGCATTCTCCTCCCAAATTGAGAGCAGGAAGGAAAAACTCACATCTTCCTCAGTTTTTTCCAGTCTTTATGTGGGTAGATGGATGTAGAATGTAAAGGATTTTATGGTAATGGTTGTAGGGAAGTTTAGATC---TTTTCCCAGAAAGTTTGATTTATTT--------AAAAAAACAGATTAACAGAAAAGAAAAAAA----AGCAgccgggtgcggtggctcacgcctgcaatcccagcactttgggaggctaaggcgggtggatcac--gaagtcaagagatcgagaccatcctggtcaacatggtgaaaccccatctctactaaaaatacaaaaaattagctgggcatggtggtgcacgcctgtagtcccagctactcaggaggctgaggcaggagaattacttgaacccaggagggggaggttgtggtgaaccgagatcgcgccattgcacttcagcctgggtaacaagagcaaaactctgtcttcaaaa i calJac3.chr1 C 0 C 0 a score=747421.000000 s hg38.chr9_GL383542v1_alt 15744 353 + 60032 aaaaaaa--aggattacaaattttataaacgtacatatgagcttcggagtcatacaaaatataaaaactcaggccaggcgtggcggcttactcttgtaatcccagcactttgggaggccaaggcaggtggatcacctgaggtcaggagttccggaccagactagccaacatggtgaaatgccgtctctactgaaaacacaaaaattagctgggtgtggtggtgggtgcctgtaatcccagctactcaggaggctgaggcaggagaattgcttgaacccaggaggcggaggttgcagtgagccaagatctcgctattgcactccagcctgggcaacaagagcaaaactccatctca s panTro4.chr9 86959472 352 + 137840987 aaaaaaa---ggattacaaattttagaaacgtgcatatgagcttcggagtcatacaaaatataaaaactcaggccaggcgtggcggcttactcttgtaatcccagcactttgggaggccaaggcaggtggatcacctgaggtcaggagttccggaccagactagccaacatggtgaaatgccgtctctactgaaaacacaaaaattagctgggtgtggtggtgggtgcctgtaaacccagctactcaggaggctgaggcaggagaattgcttgaacccaggaggcagaggttgcagtgagccaagatctcgctattgcactccagcctgggcaacaagagcaaaactccatctca i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83589184 355 + 135191526 aaaaaaaaaaagattacaaattttagaagcatgcatatgagcttgggagtcatacaaaatataaaaactcaggtcaggcgcagtggctcactcttgtaatcccagcactttgggaggccaaggcaggtagatcacctgaggtcaagagttccggaccagactagccaacatggtgaaatgccgtctctactgaaaacacaaaaattagctgggtgtggtggtgggcgcctgtaatcccagctactcaggaggctgaggcaggagaattgcttgaacctgggaggcggaggttgcagtgagccaagatcgcactattgcactccagcctgggcaacaagagcaaaactccatctca i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76109180 351 - 122973662 aaaaaaa----aattacaaattttagaaacatgcatatgagcttgggagtcatacaaaatacaaaaactcaagccaggcgcggtggctcactcctgtaatcccagcactttgggaggccaaggcaggtggatcatctgaggtcaggagttccggaccagcctagccaacatggtgaaatgccgcctctactgaaaacacaaaaattagctgggtgtggtggtgggcacctgtaatcccagctactcaggagactgaggcaggagaattgcttgaacccgggaggcggaggttacagtgagccaagatcgcgccattgcactccagcctgggctacaagagcaaaactccatctca i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 97548239 353 + 112192347 aaaaaaa--aaactcacaaattttagaaatgtgcatatgagcttgggagtcatacaaaatataaaaactcaggccaggcatggtggctcactcctgtaatcccagtactttgggaggccaaggcaggtggatcacctgaggtcaggagttccggaccagcctagccaacatggcgaaattctgtctctactgaaaacacaaaaattagctgggtgtggtggggggcacctataatcccagctactcaggatgctgaggcaggagaattgcttgaacccgggaggaggaggttgcagtgagccaagatcgcgccattgcactccagcctgggtgacaagagcaaaactccatctca i rheMac3.chr15 C 0 C 0 s macFas5.chr15 98768300 353 + 112612857 aaaaaaa--aaactcacaaattttagaaatgtgcatatgagcttgggagtcatacaaaatataaaaactcaggccaggcatggtggctcactcctgtaatcccagtactttgggaggccaaggcaggtggatcacctgaggtcaggagttccggaccagcctagccaacatggcgaaattctgtctctactgaaaacacaaaaattagctgggtgtggtggtgggcgcctataatcccagctactcaggatgctgaggcaggagaattgcttgaacccgggaggcggaggttgcagtgagccaagatcgcgccattgcactccagcctgggtgacaagagcaaaactccatctca i macFas5.chr15 C 0 C 0 s chlSab2.chr12 98693396 353 + 108555830 aaaaaaa--ggactcacaaattttagaaatgtgcatatgagcttgggagtcatacaaaatataaaaactcaggccacgcgtggtggcttactcctgtaatcccagtactttgggaggccaaagcaggtggatcacctgaggtcaggagttccggaccagcctagccaacatggcgaaatgctgtctctactgaaaacacaaaaattagctgggtgtgatggtgggcgcctataatcccagctactcaggatgctgaggcaggagaattgcttgaacccgggaggtggaggttgcagtgagccaagatctcgccattgcactccagcctgggtgacaagagcaaaactccatctca i chlSab2.chr12 I 8 C 0 s calJac3.chr1 77095800 295 + 210400635 ----aaa--aaGCTTAC--------------TGC---------------------------------------ccaggcacagtggctcattactataatcccagcacttttggagcctgaggccggcggatcacttgaggtcaggagtttgagaccaccctggccagcatggtgaaatgctgtctctactaaaaatttaaaaattaggtgggcctggtggtatctgcctgtagcctcagctacttgggaggctgaggtgagagaatagcttcaacccaggaggcagaggttgcagtgagccaagatcgtaccactgcactccagcctaggcaac-agagtgagactctgtctca i calJac3.chr1 C 0 I 1069 e papAnu2.chr15 94481997 0 + 107442819 C a score=-1674.000000 s hg38.chr9_GL383542v1_alt 16097 6 + 60032 aaaa--ta s panTro4.chr9 86959824 4 + 137840987 aaaa---- i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83589539 6 + 135191526 aaaa--ta i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76109531 4 - 122973662 aata---- i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 97548592 4 + 112192347 aaaa---- i rheMac3.chr15 C 0 C 0 s macFas5.chr15 98768653 4 + 112612857 aaaa---- i macFas5.chr15 C 0 C 0 s chlSab2.chr12 98693749 6 + 108555830 aataaa-- i chlSab2.chr12 C 0 I 1 e calJac3.chr1 77096095 1069 + 210400635 I e papAnu2.chr15 94481997 0 + 107442819 C a score=198823.000000 s hg38.chr9_GL383542v1_alt 16103 82 + 60032 aaataaaataaaataaaaataaaaactgaaagaaatcgccagatggttgacacttttctaccatcttgtggttacagaaaga s panTro4.chr9 86959828 82 + 137840987 aaataaaataaaataaaaataaaaactgaaagaaatcgccagatggttgacacttttctaccatcttgtggttacagaaaga i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83589545 82 + 135191526 aaataaaataaaataaaaataaaaactgaaagaaatcgccagatggttgacacttttctaccatcttgtggttacagaaaga i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76109535 82 - 122973662 aaataaaaaaaaataaaaataaaaactgaaggaaatcgccagatggttgacactgttctaccatcttgtgcttacagaaaga i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 97548596 82 + 112192347 aaataaaaataaataaaaataaaaActgaaagaaatcgccagatggttgacacttttctaccatcttgtggttacagaaaga i rheMac3.chr15 C 0 C 0 s macFas5.chr15 98768657 82 + 112612857 aaataaaaataaataaaaataaaaactgaaagaaatcgccagatggttgacacttttctaccatcttgtggttacagaaaga i macFas5.chr15 C 0 C 0 s papAnu2.chr15 94481997 82 + 107442819 aaataaaaataaataaaaataaaaactgaaagaaatcgCCAGATGGTTGACACTTTTCTACCATCTTGTGGTTACAGAAAGA i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 98693756 80 + 108555830 aaat--aaataaataaaaataaaaactgaaagaaatcaccagatggttgacacttttctaccatcttgtggttacagaaaga i chlSab2.chr12 I 1 C 0 e calJac3.chr1 77096095 1069 + 210400635 I a score=965255.000000 s hg38.chr9_GL383542v1_alt 16185 336 + 60032 atggaggctcagagcacggccaacgt-aaattatggcagtaag--agattatggagggag---agacgaggcctgtctcacaaaggggagtcctgttatgtagatgatgaaacctcacaggttgcagctctcggagagaatacatggtaagagtttccttcagacctttaaagatgttggattctcagttaatcttttttagatctggataagagagggcctcagaggaggcctggctgcaccgtgcagattctgcacagatgcaaagtt-tcccaggaaagacagtttttcagggctacttctgtttgcaagccctctgaacagccatctcaaaatacgtca s panTro4.chr9 86959910 336 + 137840987 atggaggctcagagcacggccaacat-aaattatggcagtaag--agattatggagggag---agaagaggcctgtctcacaaaggggagtcctgttatgtagatgatgaaacctcacaggttgcaactctcggagagaatacatggtaagagtttccttcagacctttaaagatgttggattctcagttaatcttttttagatctggataagagagggcctcagaggaggcctggctgcaccgtgcagattctgcacagatgcaaagtt-tcccaggaaagacagtttttcagggctacttctgtttgcaagccctctgaacagccatctcaaaatacatca i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83589627 338 + 135191526 atggaggctcagagcacggccaacat-aagttatggcagtaagacaggttatggagggag---agaagaggcctgtctcacaaaggggtgtcctgctatgtagatgatgaaacctcacaggttgcagctctcggagagaatacatggtaagagtttccttcagacctttaaagatgttggattctcagttaatcttttttggatctggataagagagggcctcagaggaggcctggctgcaccgtgcagattctgcacagatgcaaagtt-tcccaggaaagacagtttttcagggctacttctgtttgcaagccctccgaacagccatctcaaaatacgtca i ponAbe2.chr9 C 0 I 1834 s nomLeu3.chr1a 76109617 336 - 122973662 atggaggctcagagcatggccaacgt-aagttatggcagtaagacaggttatggagggag---agaagaggcctgtctcacaaagaggggtcctgttatgtagatgatgaaacctcacaggctgcagctctcagagagaatacatggtaagagtttccttcagacctttaaagatgttggactctcagttaatctttgttggatctggataagagaaggcctcagaggaggcctggctgcaccgtgcagattctgtgcagatgcaaagtt-ccccaggaaag--agtttttcagggctacttctgtttgcaagccctctgaacagccatctcaaaatacatca i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 97548678 341 + 112192347 atcggggctcagagcatggccaacatcaggttatggcagtaagacaggttatggagggagagaagaagaggactggctcgcaaagggg-gtcctgttatgtagatgatgtaacctcacaggttgcagctctcagagagaatacgtggtaagagtttccttcagacctttaaagatgttggactctcagttaatcttttctagatctgaataagagaaggcctcagaggaggcctggctgcaccgtgcacattctgcacagatgcaaagtt-ccccaggaaagacagcttttcggggctacttctgtttgcaggccctctgaacagctatctcaaaatacgtca i rheMac3.chr15 C 0 C 0 s macFas5.chr15 98768739 341 + 112612857 atcggggctcagagcatggccaacatcaggttatggcagtaagacaggttatggagggagagaagaagaggactggctcgcaaagggg-gtcctgttatgtagatgatgtaacctcacaggttgcagctctcagagagaatacgtggtaagagtttccttcagacctttaaagatgttggactctcagttaatcttttctagatctgaataagagaaggcctcagaggaggcctggctgcaccgtgcacattctgcacagatgcaaagtt-ccccaggaaagacagcttttcggggctacttctgtttgcaggccctctgaacagctatctcaaaatacgtca i macFas5.chr15 C 0 C 0 s papAnu2.chr15 94482079 342 + 107442819 ATTGGGGCTCAGAGCATGGCCAACATCAGGTTATGGCAGTAAGACAGGTtatggagggagagaagaagaggcCTGGCTCGCAAAGGGG-GTCCTATTATGTAGATGATATAACCTCACAGGTTGCAGCTCTCAGAGAGAATACATGGTAAGAGTTTCCTTCAGACCTTTAAAGATGGTggactctcagttaatcttttCTAGATCTGAATAAGAGAAGGCCTCAGAGGAGGCCTGGCTGCACCGTGCAGATTCTGCACAGATGCAAAGTTCCCCCAGGAAAGACAGCTTTTCGGCGCTACTTCTGTTTGCGGGCCCTCTGAACAGCTATCTCAAAATACGTCa i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 98693836 338 + 108555830 atcggggctcagagcatggccaacatcaggttatggcagtaagacaggttatggagggag---agaagaggcctggctcgcaaagggg-gtcctgttatgtagatgatgtaacctcacaggttgcagctctcagagagaatacatggtaagagtttccttcagacctttaaagatgttggactctcagttaatcttttctagatctgaataagagaaggcctcagaggaggcctggctgcaccgtgcagattctgcacagatgcaaagtt-ccccaggaaagacagcttttcggggctactgctgtttgcagaccctctgaacagctatctcaaaatacgtca i chlSab2.chr12 C 0 C 0 s calJac3.chr1 77097164 317 + 210400635 atgggggctcagagcacagcccaaatcaggttatggcagtaagacaagttatggagggag---aaaaga-gcctgactaacaaaaggg-gtcttattatgtagatga---aaactcacaggtggc-----------------catggtaagagtttccttcagaactttaatgacgttggatgctcagttaagcttttctagatctggataagagaaggcctcagaggaagcctggctggaccgtgcagattctgcacagatgcaaagtt-ccccaggcaagacagcttttgagggctacttctgtttgcaggccctctgaacagccatctgcgaatatatca i calJac3.chr1 I 1069 C 0 a score=136821.000000 s hg38.chr9_GL383542v1_alt 16521 57 + 60032 aagaaggatactttggagtgaaatattttggtttccttcaCGATCCTCACTGGAACC s panTro4.chr9 86960246 57 + 137840987 aagaaggatactttggagtgaaatattttggtttccttcaCGATCCTCACTGGAACT i panTro4.chr9 C 0 C 0 s nomLeu3.chr1a 76109953 57 - 122973662 aagaacgatattttggtgtgaaatattttggtttctttcaCGATCCTCACTGGAACC i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 97549019 57 + 112192347 aagaaggatattttggagtgaaatatttttatttccttcaCGATCCTCACTGGAACC i rheMac3.chr15 C 0 C 0 s macFas5.chr15 98769080 57 + 112612857 aagaaggatattttggagtgaaatatttttatttccttcaCGATCCTCACTGGAACC i macFas5.chr15 C 0 C 0 s papAnu2.chr15 94482421 57 + 107442819 aagaaggatattttggagtgaaatattttgatttccttcacgATCCTCACTGGAACC i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 98694174 57 + 108555830 aagaaggatattttggagtgaaagattttgatttccttcaCGATCCTCACTGGAACC i chlSab2.chr12 C 0 C 0 s calJac3.chr1 77097481 57 + 210400635 aagaaggatattttggagtgaaatattttggtgtccttcaCGATCCTCACTGGAACC i calJac3.chr1 C 0 C 0 e ponAbe2.chr9 83589965 1834 + 135191526 I a score=5486418.000000 s hg38.chr9_GL383542v1_alt 16578 1864 + 60032 CATGATAGCCCACATCCTGGCCCTGAAGTTTTAGGGTGTTAGGTAATGTATATAAACAAAATAAGCCAAAGGACACCTAAAAAACAAGCAGGCAATTTCTCAGCAACTTTATTACTTTTATAACGGGTTAATAATTCTATGGAGAGCCCTGGAATTTACTACAACTTTCTGCCTTTGTTTCTTATAGAAGCAAAGGGAGTTACCAGTAAGGTAGTAATAAATTCCAAGAATCACTTAAAGATTGCTTTTATCCATGAGAAACATACCTCAATAACAtgtgggggccaaggcagggctttccctttgaccctctctgaagtttcactg-aaaaatcaacttgcaaaaggcagattaataggagaaaagccatacaaattcatttaacatgtatacattgggggccttctgaatgaagacccaacttcccagtgaggtacagaagcttatataccattctgaggttaggagacaggaataacaag---ggtggttgcaggagaatagaaaattccaggcagtggtttcacatggctagcaaaaggaaactgtagaaatagctgcagaaactatgggctgataagaccct-aaaagccagggtgcggactaagctgggtgagactaaccggactcaacgtggcactggatttgacctaggtttcacctagaacctcattatacgctcattagcatacaaatcacacacccaccagcaccatgacagttccaggaacatccatatttggtgtgaaaatgagtagcactagagttccagaacatctccacctttttccaggaatcttcatgaatattccatcccttagttaaagaaacccac--aaaggcagcccctccaaacccctttgcatgtgactgtctcttgagtacacctgcactcccctttcttgagtgtgtacttttcactttgcaatacatttccgtacttggactattttctgactcagccttgaatttattctcactggggtggaggtcccactagcaactggggacttcccgcagcccactgatgtcagttacagaaagaatgggagcttggatcctggtaaaacaggttatgggagtggagagaagaattccattgaggggcaataaatgattactagaatgaatgactgtatgggaaacagaaattaacttgtaaatagttctctttggaatttaaatgatccctggagcaagttatt----------------------------------------atcttcttttctgtaatggataaggagataacagggaagacagcaagaataattgttctccttggtgagtctgTCCTACCTGTATGTATAGATAGGAGAAAACCAGTGCTTATTGATCTCTAAGGGTTTTTAATTTAAAATACTCATTATACCAGGGACCTGTATTTTGGAGTGAAATACTTTG-----------AAACAACCAAAGGCAGAGAGATAGTCCCAAATTATCGATGAGAAGATTAAGTAAAGTGGGCAGAAGAGAAAAAGATTATATGTCTATAATACTGCTACCCTTCCATTACTTCTCACATCGGGCAGAATTAAGATATTTCCCAAGACTGAGACACTCATGGAAGGCAGCCAGCCGTCACCACAAATCTTCATAAGCTCACTGCAGCTTTCCTGCTGCTACACACAGGCACATTCTCTCCCCCTCTTCTTTTTT--ttccttccttccttccttccttccttccttcctccctccct--ccctccctacctctcttcctcccttccttccttcctttcttctttccttccttTGCTGAGTCAAACTCAATTGTGTGTTACTTCTACAaacattttgttataaatattttcaaacatacacaaaaataaaggaagtataaaatgaatcttcacgtatttattacccagtttcaag---tataaacatttt s panTro4.chr9 86960303 1852 + 137840987 CATGATAGCCCACATCCTGGCCCTGAAGTTTTAGGGTGTTAGGTAATGTATATAAACAAAATAAGCCAAAGGACACCTAAAAACCAAGCAGGCAATTTCTCAGCAACTTTATTACTTTTATAACGGGTTAATAATTCTATGGAGAGCCCTGGAATTTACTACAAGTTTCTGCCTTTGTTTCTTATAGAAGCAAAGGGAGTTACCAGTAAGGGAGTAATAAATTCCAAGAATCACTTAAAGATTGCTTTTATCCATGAGAAACATACCTCAATAACAtgtgggggccaaggcagggctttccctttgaccctctctgaagtttcactg-aaaaatcaacttgcaaaaggcagattaataggagaaaagccatacaaattcatttaacatgtatacattgggggccttctgaatgaagacccaacttcccagtgaggtacagaagcttatataccattctgaggttaggagacaggaataacaaa---ggtggttgcaggagaatagaaaattccaggcagtggtttcacatggctagcaaaaggaaactgtagaaatagctgcagaaactatgggctgataagaccct-aaaagccagggtgtggactaagctgggtgagactaaccagactcagtgtggcactggatttgacctaggtttcacctagaacctcattatatgctcattagcatacaaatcacacacccaccagcaccatgacagttccaggaacatccatatttggtgtgaaaatgagtagcactacagttccagaacatctccacctttttccaggaatcttcatgaatattccatcccttagttaaagaaacccac--aaaggcagccgctccaaacccctttgcatgtgactgtctcttgagtacacctgcactcccctttcttgagtgtgtacttttcactttgcaatacatttccgtacttggactattttctgactcagccttgaatttattctcactggggtggaggtcccactagcaactggggacttcccgcagcccactgatgtcagttacagaaagaatgggagcttggatcctggtaaaacaggttatgggagtggagagaagaattccattgaggggcaataaatgattactagaatgaatgactgtatgggaaacagaaattaacttgtaaatagttctctttggaatttaaatgatccctggagcaagttatt----------------------------------------atcttcttttctgtaatggataaggagataacagggaagacagcaagaataattgttctccttggtgagtctgTCCTACCTGTATGTATAGATAGGAGAAAACCAGTGCTTATTGATCTCTAAGGGTTTTTAATTTAAAATACTCATTATACCAGGGACCTGTATTTTGGAGTGAAATACTTTG-----------AAACAACCAAAGGCAGAGAGATAGTCCCAAATTATCGATGAGAAGATTAAGTAAAGTGGGCAGAAGAGAAAAAGATTATATGTCTGTAATACTGCTACCCTTCCATTACTTCTCACATCGGGCAGAATTAAGATATTTCCCAAGACTGAGACACTCATGGAAGGCAGCCAGCCCTCACCACAAATCTTCATAAGCTCACTGCAGCTTTCCTGCTGCTACACACAGGCACATTCTCTCCCCCTCTTCTTTTTT--ttccttccttccttccttccttcct------------ccct--ccctccctacctctcttcctcccttccttccttcctttcttctttccttccttTGCTGAGTCAAACTCAATTGTGTGTTACTTCTACAaacattttgttataaatattttcaaacatacacaaaaataaaggaagtataaaatgaatcttcacgtatttattacccagtttcaag---tataaacatttt i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83591799 1893 + 135191526 CATGATAGTCTACATCCTGGCCCTGAAGTTTTAGGGTGGTAGGTAATGTATATAAACAGAATAAGCCAAAGGATACCCAAAAAACAAGCAGGCAATTTCTCAGCAACTTTATTACTTTTATAACAGGTTAATAATTCTATGGAGAGCCCTGGAATTTACTATAAGTTTCTGCCTTTGTTTCTTATAGAAGCAAAGGGAGTTACCAGTAAGGGACTAATAAATTCCAAGAATCACTTAAAGATTGCGTTTATCCATGAGAAACATACCTCAATAACAtgtgggggccaagggagggctttccctttgaccctctctgaagtttcactg-aaaaatcaacttgcaaaaggcagattaataggagaaaagccatacaaattcatttaacatgtatacattgggag-cttctgaatgaagacccaacttcccagtgaggtacagaagcttacataccattctgagattaggagacaggaataacaag---ggtggttgcaggagaatagaaaattccaggcagtggtttcacatggctagcaaaaggaaactgtagaaatagctgcagaaactatgggctgataagaccctgaaaaaccagggtgcggactaagctgggtgagactaaccggactcaatgtggcactggatttgacctaggtttcacctagaacctcattatacgctcattagcatacaaatcacacacccaccagcaccatgacagttccaggaacatccatatttggtgtgaaaatgagtagcactacagttccagaacatctccacctttttccaggaatcttcatgaatattccatcccttagttaaagaaacccac--aaaggcagctgctccaaacccctttgcatgtgactctgtcttgagtacacctgcactcccctttcttgagtgtgtacttttcactttgcaatacatttccgtacttggactattttctgactcagccttgaatttattctcactggggtggaggtcccactagcaactggggacttcctgcagtccactgatgtcagttacagaaagaatgggagcttggatcctggtaaaacaggttatgggagtggagagaagaattccattgaggggcaataaatgattactagaatgaatgactggatgggaaacagaaattaacttgtaaatagttctctttggaatttaaatgatccttggagccagttattgtcttgaaaagggtctgttcagatgtagttacattttttggtcttcttttctgtaatggataaggagataacagggaagagagcaagaataattgttctccttggtgagtctgTCCTACCTGTATGTATAGATAGGAGAAAACCAGTGCTTATTGATCTCTAAGGGTTTTTAATTTAAAATACTCATTATACCAGGGACCTGTATTTTGGAGTGAAATACTTTG-----------AAACAACCAAAGGCAGAGAGATAGTCCCAAATTATTGATGAGAAGATTAAGTAAAGTGGGCAGAAGAGAAAAAGATTATATGTCTATAATACTGCTACCGTTTCATTACTTCTTACATTGGGCAGAATTAAGATATTTCCCAAGACTGAGACACTCATGGAAGGCAGCCAGCCCTCACCACAAATCTTCATAAGCTCACTACAGCTTTCCTGCTGCTATACACAGGCACATTCTC-Cccctccttacttttt--ttccttccttcctccctccctcgct------------ccctacctctctcttcctcccttcctcccttccttccttcttttcttctttccttccttTGCTGAGTCAAACTCAATTGTGTGttatttctacaaacattttgttataaatattttcaaacatacacaaaaataaaggaagtataaaatgaatcttcacatatttattaccgagtttcaag---tataaacatttt i ponAbe2.chr9 I 1834 C 0 s nomLeu3.chr1a 76110010 1892 - 122973662 CATGATAGTCCACATCCTGGCCCTGAAGTTTTAGGGTGGTAGGCAATGTATATAAACAGAATAAGCCAAAGGACACCCAAAAAACAAGCAGGCAATTTCTCAGCAACTTTATTACTTTTATAACGGGTTAATAATTCTATGGAGAGCCCTGGAATTTACTATAAGTTTCTGCCTTTGTTTCTTATAGAAGCAAAGGGAGTTACCAGTAAAGGACTAATAAATTCCAAGAATCACTTGAAGATTGCGTTTATCCATGAGAAACATACCTCAGTAACAtgtgggggccaagggagggctttccctttgaccctctctgaagtttcactgaaaaaatcaacttgcaaaaggcagattaataggagaaaagccatacaaattcatttaacatgtatagattgggagccttctgaatgaagacccaacttcccagtgaggtacagaagcttatataccattctgaggttaggagacaggaataacaag---ggtggtcgcaggagaatagaaaatttcaggcagtggattcacatggttagcaaaaggaaactgtagaaatagctgcagaaactatgggctgataagaccctgaaaaaccagggtgtggactaagctgggtgagactaactggactcaatgtagcactggatttgacctaggtttcacctagaacctcattatacgctcattagcatacaaatcacacacccaccagcaccatgacagttccaggaacatccatatttggtgtgaaaatgagtagcactacaattccagaacatctccacctttttccaggaatcttcatgaatattccaccccttagtt----aaacccat--aaaggcagccgctccaaacccctttgcatgtgactctctcttgagtacactcgcactcccctttcttgagtgtgtacttttcactttgcaatatatttccatacttggactattttctgactcagccttgaatttattctcactggggtggaggtcccactagcaactggggacttcccgcagcccactgatgtcagttacagaaagaatgggagcttgaatcctggtaaaacaggttatgggagtggagagaagaattccattgaggggcaataaatgattactagaatgaatgactggatgggaaacagaaattaacttgtaaatagttctctttggaatttaaatgatccttggagccagttatc---ttgaaaagggtctattcagatgtactcacattttttggtcttcttttctgtaatggataaggagataacagggaagacagcaagaataattgttctccttggtgagtctgTCCTACCTGTATGTAGAGATAGGAGAAAACCAGTGCTTATTGATCTCTAAGGGTTTTTAATTTAAAATACTCATTATACCAGGGACCTGTATTTTGGAGTGAAATACTTTT-----------AAACAACCAAAGGCAGAGAGATAGCCCCAAATTATTGATGAGAATATTAAGTAAAGTGGGCAGAAGAGAAAAAGATTATATGTCTATAATACTGCTACCCTTTCATTACTTCTCATATTGGGCAGAATTAAGATATTTCCCAAGACTGAGACACTCATGGAAGGCAGTCAACCCTCACCACAAATCTTCATAAGCTCACTGCAGCTTTCCTGCTGCTGCACACA-GCACATTCTCTCCCCtcttcctttttttcttccttccttccttccttccttccttctttccttccttcct--tcctccctccctctctctcttcctcccttccttcccttcttctttccttccttTGCTGAGTCAAACTCAATCGTGTGttatttct----acattttgtt----atattttcaaacatacacaaaaataaaggaagtagataatgaatcttcatgtatttattacccagtttcaag---tataaacatttt i nomLeu3.chr1a C 0 I 294 s rheMac3.chr15 97549076 1908 + 112192347 CGTGATAATCCACATCCTGGCCCTGAAGTTTTAGGGTGGTAGGTAATGTATATAAACAGAATACACCAAAGGACACCCAGAAAACAAGCAGGTAATTTCTCAGCAACTTTACTACTCTTATAACGGGTTAATCATTCTATGGAGAGCCCTGGAATTTACTGTAAGTCTCTGCCCTTGTTTCTTATAGAAGCAAATGGAGTTACCAGTAAGGGACTAATAAATTCCAAAAATCACTTAAAGATCGCGTTTATCCATGAGAAACATACCTCAATAACACgtaggggccaagggagggctttccatttgaccctcgctgaagtttcactg-agaaattaacctgcaaaaggcagattcataggagaaaagccataccaattcatttaacacgtatacattgggagccttctgaatgaagacccaaattcccagtgaggtacagaagcttgtataccattccgaggttaggagacaggaataacaag---agtggtctcaggagaatagaaaagtccaggcagtggtttcacatggctagcaaaaggaaactgtagaaatagcttcagaaactatgggctgataagaccctgaaaaaccagggtgtgctctaagctgggtgagactaactggactcactgtggcacaggatttgacctaggtttcacctagaacctcattatacgctcattaacatacacatcacacacccaccagcaccatgacagctccaggaacgtccatatttggtgtgaaaatgagtagcactactgttccagaacatctccacctttttccaggaatcttcatgaatattccacccctta----aagaaacccttaaaaaggcagccgctccaaacccttttgcatgtgactctctcttgagtacacccgcactcccctttcttgagtgtgtacttttcactttgcaatacatttccgtacttggactattttctgactcagccttgaatttattctcattgggatggaagtcccacaagcaactggggacctcccgcagtccactgatgtcagttacagaaagaatgggagcttggatcctgttaaaacaggttatgggagtggagagaagaattccattgaggggcaataaatgattactagaaagaatgactggatgggaaacagaaattaacttgtaaatagttctctttggaatttaaatgatccttggagctagttattatcttgaaaagggtctgttcggatgtagttacattttttggtcttcttttgtgtaatggatacggagataacaggggagacagcaagaataattgttctccttggtaggttagctcaacctgtatatatagatatgagaaAACCAGTGCTTAAAGGTCTCTAAGGGTTTTTAATTTAAAATACTCATtataccagggacctgtattttggagtgaaacactctgatttccttcaAACACAACCAAAGGCAGAGAAATAGTCCCAAATTATTGACGAGAAGATTAAGTAAAATGGGCAGAAGAGAAAAAGATTCTATGTCTATAATACAGCTACCCTTCCATTACTTCTCACATCTGGCAGAATTAAGATATTTCCCAAGACTGAGACACTCATGGAAGGCAGCCAGCCCTCCCTACGAATCTTCATAAGCTCACTGCAGCTTTCCTGTTGCTGCTCACAGGTACATTCTCTCCCCTGCTTCCTTTTT--ttccttccttctttatttccttccttctttctt----tcct--tccttccttccttccttcctccct-ccttccctcccttcttctttccttccttTGCTGAGTCAAACTCAGTTCTGTGTTATTTCTACAaacattttgtt----atattttcaaacatacacaaaaataaaggaactatataatgaatcttcacgtatttattacccagcttcaagtattataaacatttt i rheMac3.chr15 C 0 C 0 s macFas5.chr15 98769137 1908 + 112612857 CGTGATAATCCACATCCTGGCCCTGAAGTTTTAGGGTGGTAGGTAATGTATATAAACAGAATACACCAAAGGACACCCAGAAAACAAGCAGGTAATTTCTCAGCAACTTTACTACTCTTACAACGGGTTAATCATTCTATGGAGAGCCCTGGAATTTACTGTAAGTCTCTGCCCTTGTTTCTTATAGAAGCAAATGGAGTTACCAGTAAGGGACTAATAAATTCCAAAAATCACTTAAAGATCGCGTTTATCCATGAGAAACATACCTCAATAACACgtaggggccaagggagggctttccatttgaccctcgctgaagtttcactg-agaaattaacctgcaaaaggcagattcataggagaaaagccataccaattcatttaacacgtatacattgggagccttctgaatgaagacccaaattcccagtgaggtacagaagcttatataccattccgaggttaggagacaggaataacaag---agtggtctcaggagaatagaaaagtccaggcagtggtttcacatggctagcaaaaggaaactgtagaaatagcttcagaaactatgggctgataagaccctgaaaaaccagggtgtgctctaagctgggtgagactaactggactcactgtggcacgggatttgacctaggtttcacctagaacctcattatacgctcattaacatacacatcacacacccaccagcaccatgacagttccaggaacgtccatatttggtgtgaaaatgagtagcactacagttccagaacatctccacctttttccaggaatcttcatgaatattccacccctta----aagaaacccataaaaaggcagccgctccaaaccctttttcatgtgactctctcttgagtacacccgcactcccctttcttgagtgtgtacttttcactttgcaatacatttccgtacttggactattttctgactcagccttgaatttattctcattgggatggaagtcccacaagcaactggggacctcccgcagtccactgatgtcagttacagaaagaatgggagcttggatcctgttaaaacaggttatgggagtggagagaagaattccattgaggggcaataaatgattactagaaagaatgactggatgggaaacagaaattaacttgtaaatagttctctttggaatttaaatgatccttggagctagttattatcttgaaaagggtctgttcggatgtagttacattttttggtcttcttttgtgtaatggatacggagataacaggggagacagcaagaataattgttctccttggtaggttagctcaacctgtatatatagatatgagaaAACCAGTGCTTAAAGGTCTCTaagggtttttaatttaaaatactcattataccagggacctgtattttggagtgaaacactttgatttccttcaAACACAACCAAAGGCAGAGAAATAGTCCCAAATTATTGACGAGAAGATTAAGTAAAATGGGCAGAAGAGAAAAAGATTCTATGTCTATAATACAGCTACCCTTCCATTACTTCTCACATCTGGCAGAATTAAGATATTTCCCAAGACTGAGACACTCATGGAAGGCAGCCAGCCCTCCCTACGAATCTTCATAAGCTCACTGCAGCTTTCCTGTTGCTGCTCACAGGTACATTCTCTCCCCTGcttccttttt--ttccttccttctttatttccttccttctttct--------t--tccttccttccttccttcctccct-ccttccctcccttcttctttccttccttTGCTGAGTCAAACTCAGTTCTGTGTTATTTCTACAaacattttgttataaatattttcaaacatacacaaaaataaaggaactatataatgaatcttcacgtatttattacccagcttcaagtattataaacatttt i macFas5.chr15 C 0 C 0 s papAnu2.chr15 94482478 1904 + 107442819 CATGATAATCCACATCCTGGCCCTGAAGTTTTAGGGTGGTAGGTAATGTATATAAACAGAATACACCAAAGGACACCCAGAAAACAAGCAGGTAATTTCTCAGCAACTTTACTACTCTTATAACGGGTTAATCATTCTATGGAGAGCCCTGGAATTTACTATAAgtctctgcttttgtttcttatAGAAGCAAATGGAGTTACCAGTAAGGGACTAATAAATTCCAAAAATCACTTAAAGATCGCGTATATCCATGAGAAACATACCTCAATAACACGTAGGGGCCAAGGGAGGGCTTTCCATTTGACCCTCGCTGAAGTCTCACTG-AGAAATTAACCtgcaaaaggcagattaataggagaaaagccATACAAATTCATTTAACACGTATACATTGGGAGCCTTCTGAATGAAGACCCAAATTCCCAGTGAGGTACAGAAGCTTATATACCATTCTGAGGTTAGGAGACAGGAATAACAAG---AGTGGTCACGGGAGAATAGAAAAGTCCAGGCAGTGGTTTCACATGGCTAGCAAAAGGAAACTGTAGAAATAGCTTCAGAAACTATGGGCTGATAAGACCCTGAAAAACCAGGGTGTGCTCTAAGCTGGGTGACACTAACTGGACTCACTGTGGCACTGGATTTGACCTAGGTTTCACCTAGAACCTCATTATACGCTCATTAACATACACATCACacacccaccagcaccatgacagttccAGGAACATCCATATTTGGTGTGAAAATGAGTAGCACTACAGTTCCAGAACATCTCCACCTTTTTCCAGGAATCTTCATGAATATTCCACCCCTTA----AAGAAACCCATAAAAAGGCAGCCGCTCCAAACCCTTTTGCATGTGACTCTCTCTTGAGTACACCCGCACTCCCCTTTCTTGAGTGTGTACTTTTCACTTTGCAATACATTTCCGTACTTGGACTATTTTCTGACTCAGCCTTGAATTTATTCTCATTGGGATAGAAGTCCCACAAGCAACTGGGGACCTCCCGCAGTCCACTGATGTcagttacagaaagaatgggagCTTGGATCCTGTTAAAACAGGTTATGGGAGTGGAGAGAAGAATTCCATTGAGGGGCAATAAATGATTACTAGAAAGAATGACTGGATGGGAAACAGAAATTAACTTGTAAATAGTTCTCTTCGGAATTTAAATGATCCTTGGAGCTAGTTATTATCTTGAAAAGGGTCTGTTCGGATGTAGTTACATTTTTTGGTCTTCTTTTGTGTAATGGATACGGAGATAACAGGGGAGACAGCAAGAATAATTGTTCTCCTTGGTAGGTTAGCTCAACCTGTATATATAGATACGAGAAAACCAGTACTTAAAGGTCTCTAagggtttttaatttaaaatactcattATACCAGGGACCTGTATTTTGGAGtgaaatactttgatttccttcaaACACAACCAAAGGCAGAGAAATAGTCCCAAATTATTGACGAGAAGATTAAGTAAAATgggcagaagagaaaaagatTCTATGTCTATAATACAGCTACCCTTCCATTACTTCTCACATCTGGCAGAATTAAGATATTTCCCAAGACTGAGACACTCATGGAAGGCAGCCAGCCCTCCCTACGAATCTTCataagctcactgcagctttcctGTTGCTGCACACAGGTACATTCTCTCccctgcttccttttt--ttccttccttctttatttccttccttctttct--------------ttccttccttccttcctccct-ccttccatcccttcttctttccttcctttgctgAGTCAAACTCAGTTCTGTGTTATTTCTACAAacattttgttataaatattttcaaacatacacaaaaataaaggaaCTATATAATGAATCTTCACGTATTTATTACCCAGCTTCAAGTATTATAAACATTTT i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 98694231 1904 + 108555830 CATGATAATCCACATCCTGGCCCTGAAGTTTTAGGGTGGTAGGTAATGTATATAAACAGAATACACCAAAGGACACCCAGAAAACAAGCAGGTAATTTCTCAGCAACTTTACTACTCTTATAACGGGTTAATAATTCTATGGAGAGCCCTGGAATTTACTATAAGTCTCTGCGTTTGTTTCTTATAGAAGCAAATGGAGTTACCAGTAAGGGACTAATAAATTCCAAAAATCACTTAAACATCGCGTTTATCCATGAGAAACATACCTCAATAACACgtaggggccaacggagggctttccgtttgaccctcgctgaagtttcactg-agaaattaacctgcaaaaggcagattaataggagaaaagccatacaaattcatttaacacatatacattgggagccttctaaatgaagacccaaattcccagtgaggtagagaagcttatataccattctgaggttaggagacaggaataacaag---agtggccacaggaaaatagaaaagtccaggcagtggtttcacatggctagcaaaaggacactgtagaaatagcttcagaaactatgggctggtaagaccctgaaaaaccagggtgtgctctaagctgggtgacactaactggactcactgtggcactggatttgacctaggtttcacctagaacctcgttatacgctcattaacatacacatcacacacccaccagcaccatgacagttccaggaacatccatatttggtgtgaaaatgagtagcactacagttccagaacatctccacctttttccaggaatcttcatgaatattccacccctta----aagaaacccataaaaaggcagccgctccaaacccttttgcatgtgactctctcttgagtacacccgcactcccctttcttgaatgtgtacttttcactttgcaatacatttccgtacttggactattttctgactcagccttgaatttattctcactggggtggaagtcccataagcaagtggggacctcctgcagtccactaatgtcagttacagaaagaatgggagcttggatcctgttaaaacaggttatgggagtggagagaagaattccattgaggggcaataaatgattactagaaagaatgactggatgggaaacagaaattaacttgtaaatagttctctttggaatttaaatgatccttggagctagttattatcttgaaaagggtctgttcggatgtagttacattttttggtcttcttttgtgtaatggatacggagataacaggggagacagcaagaataattgttctccttggtaggttagctcaacctgtatatatagatacgagaaAACCAGTGCTTAAAGGTCTCTaagggtttttaatttaaaatactcattacaccagggacctgtattttggagtgaaatactttgatttccctcaAACACAACCAAAGGCAGAGAAATAGTCCCAAATTATTGATGAGAAGATTAAGTAAAATGGGCAGAAGAGAAAAAGATTCTATGTCTATAATACGGCTACCCTTCCATTATTTCTCACATCTGGCAGAATTAAGATATTTCCCAAGACTGAGACACTCATGGAAGGCAGCCAGCCCTCCCCACGAATCTTCATAAGTTCACTGCAGCTTTCCTGTTGCTGCACACAGGTACATTCTCTCCCCGGcttccttttt--ttccttcc----ttatttccttccttctttct--------t--tccttccttccttccttcctccct-ccttccctctcttcttctttccttccttTGCTGAGCCAAACTCAGTTCTGTGTTATTTCTACAaacattttgttataaatattttcaaacatacacaaaaataaaggaactatataatgaatcttcacgtatttattacccagcttcaagtattataaacatttt i chlSab2.chr12 C 0 C 0 s calJac3.chr1 77097538 1828 + 210400635 CGTGATAGTCCGCATCCTGGCCCTGAAGTTTTAGAGTGATAGCTAATATATATAAACAGAATAAGCCAAAGGACACCCA-AAAATAAGCAGGCAATTTCTCAGCAACTTTATTACTTTTATAAAGGGTTAATGATTCTATGGAGAGCCCTGGAATGTACGATAAGTCTCTGCCTTTGTTTCTTATAGAAGCAAAGGGAGTTACCAGTGAGGGATTAATAAATTCCAAGGATCACTTAGAGATTGTGTTTATCCACGAGAAACATCCCCCAGCAACAtgtgggggacgtgggagagatttccctttcaccctctctgaaggttcactg-aaaaatcaacttgcgaatggcagattaataggagaaaagctgtacaaattcatttaacatgtatacattgggagccttctgaatgaaggcacaacttcccaacgagatacagaagcttatataccattctgaggttagaagacaggaataacaagcctggtggtcgcaggagaagagaaaattccagacagtgttttcacatgactagcaaaaaagaactgcagaaatagctgcagaaactatgggctgataagaccccgaaaaaccagggtgtggaccaagctagcgaatactaagtgtacccactgtggcagtgcatttgacctaggtttcacctacaccctcattatacgctcattaacatacaaatcacacacccaccagcaccatgacagttccaggaacacccatatttggtgtaaaaatgagtagcactacagttcccgaacatccccacc-ttttccaggaatctttatgaatattccaccccttagtta---aaatccat--aaaggcagcagctccaaacccctttgcatgtgactctctcttgattatacccgcacgcccctttcttgagtgtatacttttcactttgcaatactttcccatacttggactattttctgactcagccttgaatttattctcactggggtggaggtcccactggcaactgaggaccttccacagcccactgatgtcagttacagacagaatgggagtttggatcct---------ggttatgggagcggagagaagaattccattgaggggcaataaatgattactagaaagaatgactggatgggaaacagaaattaatttgtaaatagttctctttggaatttaaaagatccttggagccagttattatcttgaagagggtctgttcagatgtagtta-attttttggtctccttttctgtaatggataatgagataacagggaagacaacaagaataattgttccccttggtgggccAGTCCTATCTGTATGTATAGATAGGGGAAAACCAGTGCTTACTGATCTCTAAGGGTTTTTAATTTAAAATACTCATTATACCAGGGACCTGTATTTAGGAGTGAAATACTTAGATTTCCTTCAAACACAGCTAAAGGCAGAGAGCTAGTCCCAAATTATTGATGAGAAGATTAAGTAAAGTGGACAGAAGAGAAAAAGATTATATGTCTGTCAGACTGCTAGCCTTTCATTACTTCTCACATCTGGCAGGATTAAGATATTTCCCAAGACTGAGACACTCATGGAAGGCAGCCAGCCCTCACTAAGAACCTTCATAAGCTCACTGCAGCTTTCCTGCTGCTACACACAGGCATATTCTCTCC-------------T--CTC----------------------------------ccct--ccctccctccctcccttc-------cCTTCC-------CTTCTTTCCTTCCTTAACTGAGTCAAACTCAATTGTGTGTTATTTCTACAAACATTTTGT-----------------ATaaacacacaaaaaggaagtatacaatgaatcttcacatatctattacccagcttcaagtattatcaacattt- i calJac3.chr1 C 0 C 0 a score=210682.000000 s hg38.chr9_GL383542v1_alt 18442 69 + 60032 gccaatcttgttttatctactctcca-ccccttcctctcctcaccactcaatgtttctctggatcatttt s panTro4.chr9 86962155 65 + 137840987 gccaatcttgttttatctactctcca-ccccttcctctcctcacca----atgtttctctggatcatttt i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83593692 70 + 135191526 gccaatcttgttttatctactctccacccccttcctctcctcaccactcaatgttgctctggatcatttt i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76112196 69 - 122973662 gccaatcttgttttatctactctcca-ccccttcctctcctcaccactcaatgtttctctggatcatttt i nomLeu3.chr1a I 294 C 0 s rheMac3.chr15 97550984 69 + 112192347 gccaatcttgttttatctactctcca-ccccttcctctcctcaccactcagtgtttctctggatcatttt i rheMac3.chr15 C 0 C 0 s macFas5.chr15 98771045 69 + 112612857 gccaatcttgttttatctactctcca-ccccttcctctcctcaccactcagtgtttctctggatcatttt i macFas5.chr15 C 0 C 0 s papAnu2.chr15 94484382 69 + 107442819 GCCAATCTTGTTTTATCCACTCTCCA-CCCCTTCCTCTCCTCACCACTCAGTGTTTCTCTGGATCATTTT i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 98696135 69 + 108555830 gccaatcttgttttatctactctcca-ccccttcctctcctcaccactcagtgtttctctggatcatttt i chlSab2.chr12 C 0 C 0 s calJac3.chr1 77099366 69 + 210400635 gccaatcttgttttatttactctcca-ccccttcctccccttgccactcaatgttttcctggagcttttt i calJac3.chr1 C 0 I 624 a score=31836.000000 s hg38.chr9_GL383542v1_alt 18511 12 + 60032 aaggcaaattcc s panTro4.chr9 86962220 12 + 137840987 aaggcaaattcc i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83593762 12 + 135191526 aaggcaaattcc i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76112265 12 - 122973662 aaggcaaattcc i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 97551053 12 + 112192347 aaggcaaattcc i rheMac3.chr15 C 0 C 0 s macFas5.chr15 98771114 12 + 112612857 aaggcaaattcc i macFas5.chr15 C 0 C 0 s papAnu2.chr15 94484451 12 + 107442819 AAGGCAAATTCC i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 98696204 12 + 108555830 aaggcaaattcc i chlSab2.chr12 C 0 C 0 e calJac3.chr1 77099435 624 + 210400635 I a score=150284.000000 s hg38.chr9_GL383542v1_alt 18523 47 + 60032 aggttttcagtcttaaatgtatcacgtctgtctaaaaataagcactt s panTro4.chr9 86962232 47 + 137840987 aggttttcagtcttaagtgtatcacgtctgtctaaaaataagcactt i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83593774 47 + 135191526 aggttttcagtcttaaatgtatcacgtctgtctaaaaataagcactt i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76112277 47 - 122973662 aggttttcagtcttaaatgtatcacgtctgtctaaaaataagcactt i nomLeu3.chr1a C 0 I 1 s rheMac3.chr15 97551065 47 + 112192347 aggttttcagtcttaaatgtatgacgtctgtctaaaaataagcactt i rheMac3.chr15 C 0 C 0 s macFas5.chr15 98771126 47 + 112612857 aggttttcagtcttaaatgtatgacgtctgtctaaaaataagcactt i macFas5.chr15 C 0 C 0 s papAnu2.chr15 94484463 47 + 107442819 AGGTTTTCAGTCTTAAATGTATGACGTCTGTctaaaaataagcactt i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 98696216 47 + 108555830 aggttttcagtcttaaatgtatgacgtctgtctaaaaataagcactt i chlSab2.chr12 C 0 I 302 s calJac3.chr1 77100059 47 + 210400635 aggttttcagtcttaaatgtatcatatctgtctaaaaacaagcactt i calJac3.chr1 I 624 C 0 a score=4995179.000000 s hg38.chr9_GL383542v1_alt 18570 1655 + 60032 --------------aaaaaaaacctaatcacagcacattatcatactttcccaaattaatatttcttgatttcatctaatacccagtttgttttaaaattttctcaaaaataactttatgcagttggtgtgttcaaataggctctatgcaaagtc---tacatcgtgcatttgataaatctcttaagctctttcaatatgtgatactt-ccccttcttctttctggctttcaggccatatgtttggtctgctcaattttccacagtctggatcttgatgaattgcattcttatggtgtaactaacacattcttttgcttcttgtatttcctgtaagctgatgtttacatttagagg-----------cttgtttagacgcaggtttgaatttttttagcatg-aaAGTTCCAGTTGCACTGCAGAATGTCTGGTGATCCCAGGTTTAGCACTTTTGAGGTTGATCAGTTAAAAAGTAGCTGTTTGGGAGGCAAAGGGCACATGTTAGTCGCCTTTGCATGCCCATTGTCAAGCACAGCATTGTGCCTAGAGCAATCCCTGGCAATGTTTACTGAGTTGAAGCAGTTGATGAAACCCAGATTTGTGAGACTTCAGATACAAATCTTCTATTCTCAGCTGAGATGCCTAAACTTTATTAATTCACATCTGTATGTTGTAAAAGTTCTATTTTATTTTACGACCTTAGCCAGTTTTGACCAGTTCACCTTGGCTGCGGTTGTTTCTGTTTCATCTTTTTCTCATAAATAGtgtcaaccttaaataatgagattcagaaaatatgactaaggatagagtttattcgagtgcaaagcttgaggatagccactcatgaagcgtcagctccaaatgaatatggtcagcattcccaagtggagaagttaaggtttcacttttacagacagagacaaagatattttcagaggattacaacattttccataggagaccagtgcatacattaaagcaatttgattggtcacagattgctacgtgccaaggaagattactttattactcaatgaggagggatggtgatctgaggaggtcttctctctcgtgctgtttggtcttcttaattattcacagggggaaaaaaaggcggaagttgccgctg-----cacgtgactcaggctgcatagccacatttgtctcaaggctcagaataacttaaagttccaacaacttgaagtttgaattatttaatttcacaATAGAAATTAAA-------------ACAAAGATTTTAACGTTTCTTAATAAGAAGAAGCCATCTTCATGCGAATTGTGAAATTTTTAAATTAA-ATATATTTTTAAAGTTAGTAATTTACTCAAGCGTTGTTTAGACATTGTTTTAGAAACTGGTATCTTGAGTGTCTATGCTTGTCATCTTTCATGATGAATGGTCCCTGTTTATTTGCAAAACTTGCCAATCTGCCAAAGCTTTATTTGCTGGGAA-TTAGCATGTCTGGGAAAGTAACACTTTCTTTTTGCTTTAGTAACATACAAATATTTTTAAAAAAGGATATACATATTTTTAGGAAAATATTCTTAGCAAACCCAAGATTGAGATCTATGAGTTCATTTTTCCCCTA--TTTTTCTACACCTTT--AAAAAAATTCCCCTTTGGAGATTGAAACAGGAGAAAGGGTAGGGCCCAATATCACACAGGGACAAGAGTTGAGC s panTro4.chr9 86962279 1653 + 137840987 --------------aaaaaaaacctaatcacagcacattatcatactttcccaaattaatatttcttgatttcatctaatacccagtttgttttaaaattttctcaaaaataactttatgcagttggtgtgttcaaataggctctatgcaaagtc---tacatcgtgcatttgataaatctcttaagctctttcaatatgtgatactt-ccccttcttctttctggctttcaggccatatgtttggtctgctcaattttccacagtctggatcttgatgaattgcattcttatggtgtaactaacacattcttttgcttcttgtatttcctgtaagctgatgtttacatttagagg-----------cttgtttagacgcaggtttgaatttttttagcatg-aaAGTTCCAGTTGCACTGCAGAATGTCTGCTGATCCCAGGTTTAGCACTTTTGAGGTTGATCAGTTAAAAAGTAGCTGTTTGGGAGGCAAAGGGCACATGTTAGTCGCCTTTGCATGCCCATTGTCAAGCACAGCATTGTGCCTAGAGCAATCCCTGGCAATGTTTACTGAGTTGAAGCAGTTGATGAAACCCAGATTTGTGAGACTTCAGATACAAATCTTCTATTCTCAGCTGAGATGCCTAAACTTTATTAATTCACATCTGTATGTTGTAAAAGTTCTATTTTATTTTACGACCTTAGCCAGTTTTGACCATTTCACCTTGGCTGCGGTTGTTTCTGTTTCATCTTTTTCTCATAAATAGtgtcaaccttaaataatgagattcagaaaatatgactaaggatagagtttattcaagtgcaaagcttgaggatagccactcatgaagcgtcagctccaaatgaatatggtcagcattcccaggtggagaagttaaggtttcacttttacagacagagacaaagacattttcagaggattacaacattttccaaaggagaccagtgcatacattaaagcaatttgattggtcacagattgctacgtgccaaggaagattactttattactcaatgaggagggatggtgatctgaggaggtcttctctctcgtgctgtttggtcttcttaattattcacagggggaaaaaaaggcggaagttgccgctg-----cacgtgactcaggctgcatagccacatttgtctcaaggctcagaataacttaaagttccaacaacttgaagtttgaattatttaatttcacaATAGAAATTAAA-------------ACAAAGATTTTAACGTTTCTTAATAAGAAG---CCATCTTCATACGAATTGTGaaatttttaaattaa-atatatttttaaaGTTAGTAATTTACTCAAACGTTGTTTAGACATTGTTTTAGAAACTGGTATCTTGAGTGTCTATGCTTGTCATCTTTCATGATGAATGGTCCCTGTTTATTTGCAAAACTTGCCAATCTGCCAAAGCTTTATTTGCTGGGAAGTTAGCATGTCTGGGAAAGTAACACTTTCTTTTTGCTTTAGTAACATATAAATATTTTTTAAAAAGGATATACATATTTTTAGGAAAATATTCTTAGCAAACCCAAGATTGAGATCTATGAGTTCATTTTTCCCCTA--TTTTTCTACACCTTT--AAAAAAATTCCCCTTTGGAGATTGAAACAGGAGAAAGGGTAGGGCCCAATATCACACAGGGACAAGAATTGAGC i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83593821 1655 + 135191526 --------------aaaaaaaacctaatcacagcacatcatcatactttcccaaattaatatttcttgatttcatctaatacccagtttgttttaaaattttctcaaatataactttatgcagttggtgtgttcaaataggctctatgcaaagtc---tacatcgtgcatttgataaatctcttaagctctttcaatatgtgatactt-ccccttcttctttctggctttcaggccatatgtttggtctgctcaattttccacagtctggatcttgatgaattgcattcttatggtgtaactaacacattcttttgcttcttgtatttcctgtaagctgatgtttacatttagagg-----------cttgtttagactcaggtttgaatttttttAGCATG-CAAGTTCCAGTTGCACTGCAGAAT-TCTGGTGATCCCAGGTTTAGCACTTTTGAGGTTGATCAGTTAAAAAGTAGCTGTTTGGGAGGCAAAGGGCACACATTAGTCGCCTTTGCATGCCCACTGTCAAGCACAGCATTGTGCCTAGAGCAAGCCCTGGCAATGTTTACTGAGTTGAAGCTGTTGATGAAACCCAGATTTGTGGGACTTCAGATACAAATCTACTATTCTCAGCTGAGATGCCTAAACTTTATTAATTCACATCTGTATGTTGTAAAAGTTCTATTTTATTTTATGACCTTAGCCAGTTTTGACCAGTTCACCTTGGCTGTGGTTGTTTCTGTTTCATCTTTTTCTCATAAATAGtgtcaaccttaaacaatgagattcagaaaatatgactaaggatagagttcatttgagtgcaaagcttgaggatagccactcatgaagcgtcagctccaaatgaatatggtcagcattcccaagtggagaagttaaggtttcacttttacagacagagacaaagacattttcagaggattacaacattttccataggagaccagtgcatacattaaagcaatttgattggtcacagattgctacgtgccaaggaagattactttattactcaatgaggagggatggtgatctggggaggtcttctctctcatgctgtttggtcttcttaattattcacagggggaaaaaaaggcggaagttgcagctg-----cacgtgactcaggctgcatagccacatttgtctcaaggctcagaataacttaaagttccaacaacttgaagtttgaattatttaatttcacaATAGAAATTAAA-------------ACAAAGATTTTAACGTTTCTTAATAAGAAGAAGCCATCTTCGTGTGAATTGTGaaatttttaaattaa-atatatttttaaaGTTAGTAATTTACTCAAGCGTTGTTTAGACATTGTTTTAGAAACTGGAATCTTGAGTGTCTATGCTTGTCATCTTTCATGAGGAATGGTCCCTGTTTATTTGCAAAACTTGCCAATCTGCCAAAGCTTTATTTGCTGGGAAGTTAGCATGTCTGGGAAAGTAACACTTTCTTTTTGCTTTAGTAACTTATAAATATTTTTAAAATAGGATATACATATTTTTAGGAAAATATTCTTAGCAAACCCAAGATTGAAATCTATGAGTTCATTTTTCCCCTA--TTTTTCTACACCTTT--AAAAAAATTCCCCTTTGGAGATTGAAACAGGAGAAAGGGTAGGGCCCAATATCACACAGGGACAGGAGTTGAGC i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76112325 1634 - 122973662 --------------aaaaaaaacctaatcacagcacattatcatactttcccaaattaatatttcttgatttcatctaatacccagtttgttttaaaattttctcaaaaataactttatgcagttggtgtgttcaaataggctctatgcaaagtc---tacatcgtgcatttgataaatatcttgagctctttcaatatgtgatactt-ccccttcttctttctggctttcaggccatatgtttgatctgctcaattttccacagtctggatcttgatgaattgcattcttatggtataactaacacattcttttgcttcttgtatttcctgtaagctgatgtttacatttagagg-----------cttgtttagactcaggtttgaatttttttagcatg-aaAGTTCCAGTTGCACTGCCGAATGTCTGGTGAACCCAGGTTTAGCACTTTTGAGGTTGATCAGTTAAAAAGTAGCTGTTTGGGAGGCAAAGGGCACATGTTAGTCGCCTTTGTATGCCCATTGCCAAGCACAGCATTGTGCCTAGAGCAAGCCCTGGCAATGTTTACTGAGTTGAAGCAGTTGATGAAACCCAGATTTGTGGGACTTCAGATACAAATCTACTATTCTCAGCTGAGATGCCTAAACTTTATTAATTCACATCTGTATGTTGTAAAAGTTCTATTTTATTTTATGACCTTAGCCAGTTTTGACCAGTTCACCTTGGCTGCGGTTGTTTCTGTTTCATCTTTTTCTCATAAATAGtgtcaaccttaaataatgagattcagaaaatatgactaaggatagagtttattcgagtgcaaagcttgaggatagccactcatgaagtgtcagctccaaatgaatatggtcagcattcccaagtggagaagttaaggtttcacttttacagacagagacaaagacattttcagaggattacaacattttccataggagaccagtgcatacattaaagcaat----ttggtcacagattgctacgtgccaaggaagattactttattactcaatgaggaggggtggtgatctgagga----------------------ggtcttcttaattattcacagagggaaaaaaaggcggaagttgcagctgcatgccatgtgactcaggctgcatagccacatttgtctcaaggctcagaataacttaaagttccaacaacttgaagttggaattatttaatttcacaATAGAAATTAAA-------------ACAAAGATTTTAACATTTCTTAATAAGAAGAAGCCGTCTTCATGCGAATTGTGAAATTTTTAAATTAA-ATATATTTTTAAAGTTAGTAATTTACTGAAAC---ATTTAGACATTGTTTTAGAAACTGGAATCTTGAGTGTCTATGCTTGTCATCTTTCATGATGAATGGTCCCTGTTTATTTGCAAAACTTGCCAATCTGCCAAAGCTTTATTTGCTGGGAAGTTAGCATGTCTGGGAAAGTAACACTTTCTTTTTGCTTTAGTAACGTACAAATATTTTTAAAATAGGATATACATATTTTTAGGAAAATATTCTTAGCAAACCCAAGATTGGAATCTATGAGTTCATTTTTCCCCTA--TTTTTCTACACCTTTAAAAAAAAATTCCCCTTTGGAGAGTGAAACTGGAGAAAGGGTAGGGCCCAATATCACACAGGGACAGGAGTTGAGC i nomLeu3.chr1a I 1 C 0 s rheMac3.chr15 97551112 1657 + 112192347 --------------aaaaaaaacctaatcacaacacatcatcatacttccccaaattaatatttcttgatttcatctaatatccagtttgttttaaaattttctcaaaaataactttatgcatttggtgtgttcaaataggctctatgcaaagtc---tacatcgtgcatttggtaaatttcttaagctctttcaatatgtgatactt-ccccttcttctttctggctttcaggccatatgtttggtctgctcagttttccacagtctggatcttgatgaattgcattcttatggtgtaactaatacattcttttgcttcctgtatttcctgtaagctgatgtttacacttagatgtttacactacgcttgtttagactcaggtttgaatttttttagcatg-aaagttccagttgcactgcagaatgtctggtgatcccaagtgtagtatttttgaggttgatcagtTAAAAAGTAGCTGTTTGGGAGGCAAAGGGCACATGTTAGTCGCTTCTGCACGCCCATTGCCAAGCACAGCATTGTGCCTAGAGCAAGCCCTGGCAATGTTTACTGAGTTGAAGCAGTTGATGAAACCCAGATTTGTGGGACTTCAGATATAAATCTACTATTCTCAGCT--GATGCCTAAACTTTATTAATTCACATCTGTATGTTGTAAAAGTTC-----TATTTTACGACCTTAGCCAGTTTTGACCAGTTCACCTTGGCTGCAGTTCTTTCTGTTTCATCTTTTTCTCAT-AATAGtgtcaaccttaaataatgagattcagaaaatatgactaaggatagagtttattcgagtgcaaagtttgagaatagtcactcaagaagcgtcagctccaaataaatatggtcagcactcccaagtggagaagttaaggtttcactttt----acagagacaaagacattttcagaggattacaacattttccataggagaccagtgcatacattaaagcaatttgattggtcacagattgctacgtgccaaggaagattactttattactcaatgaggaggggtggtgatctgagggagtcttctctctggtgttgtttggtcttcttaattattcacagggggaaaaaaaggcggaagttgcagctgcatgccacgtgactcaggctgcatagccacatttgtcacaaggctcagaataactgaaagttccaatgacttgaagtttgaattatttaatttcacaATAGAAATTAAA-------------ACAAAGATTTTAACGTTTCTTAATAAGAAG---CCATCTTCATGCAAATTGTGaaatttttaaattaa-atctatttttaaaGTTAGTAATTTACTCAAACGTTGTTTAGACATTGTTTTAGAAACTGGAATCTTGAGTGTCTATGCCTGTCATCTTTCATGATGAATGGTCCCTATTTATTTGCAAAACTTGCCAATCTGCCAAAGCGTTATTTGCTGGGAAGTTAGCATGTCTGGGCAAGTAACACTTTCTTTTTGCTTTAGTAACGTATAAATATTTTAAAAATAGGATATACATATTTTTAGGAAAATATTCTTAGCAAACCCAAGATTGGAATCTATGAGTTCA-TTTTCACCTA--TTTTTCTACACCTTT-AAAAAAAATTCCCCTTTGGAGATTGAAACAGGAGAAAGGGCAGGGCCCAATATCACACAGGGACAGGAGTTGAAC i rheMac3.chr15 C 0 C 0 s macFas5.chr15 98771173 1658 + 112612857 --------------aaaaaaaacctaatcacaacacatcatcatacttccccaaattaatatttcttgatttcatctaatatccagtttgttttaaaattttctcaaaaataactttatgcatttggtgtgttcaaataggctctatgcaaagtc---tacatcgtgcatttggtaaatttcttaagctctttcaatatgtgatactt-ccccttcttctttctggctttcaggccatatgtttggtctgctcagttttccacagtctggatcttgatgaattgcattcttatggtgtaactaatacattcttttgcttcctgtatttcctgtaagctgatgtttacacttagatgtttacactacgcttgtttagactcaggtttgaatttttttagcatg-aaAGTTCCAGTTGCACTGCAGAATGTCTGGTGATCCCAAGTGTAGTATTTTTGAGGTTGATCAGTTAAAAAGTAGCTGTTTGGGAGGCAAAGGGCACATGTTAGTCGCTTCTGCACGCCCATTGCCAAGCACAGCATTGTGCCTAGAGCAAGCCCTGGCAATGTTTACTGAGTTGAAGCAGTTGATGAAACCCAGATTTGTGGGACTTCAGATATAAATCTACTATTCTCAGCT--GATGCCTAAACTTTATTAATTCACATCTGTATGTTGTAAAAGTTC-----TATTTTACGACCTTAGCCAGTTTTGACCAGTTCACCTTGGCTGCAGTTCTTTCTGTTTCATCTTTTTCTCAT-AATAGtgtcaaccttaaataatgagattcagaaaatatgactaaggatagagtttattcgagtgcaaagtttgagaatagtcactcaagaagcgtcagctccaaatgaatatggtcagcactcccaagtggagaagttaaggtttcactttt----acagagacaaagacattttcagaggattacaacattttccataggagaccagtgcatacattaaagcaatttgagtggtcacagattgctacgtgccaaggaagattactttattactcaatgaggaggggtggtgatctgagggagtcttctctctggtgttgtttggtcttcttaattattcacagggggaaaaaaaggcggaagttgcagctgcatgccacgtgactcaggctgcatagccacatttgtcacaaggctcagaataactgaaagttccaatgacttgaagtttgaattatttaatttcacaATAGAAATTAAA-------------ACAAAGATTTTAACGTTTCTTAATAAGAAG---CCATCTTCATGCAAATTGTGAAATTTTTAAATTAA-ATCTATTTTTAAAGTTAGTAATTTACTCAAACGTTGTTTAGACATTGTTTTAGAAACTGGAATCTTGAGTGTCTATGCCTGTCATCTTTCATGATGAATGGTCCCTATTTATTTGCAAAACTTGCCAATCTGCCAAAGCGTTATTTGCTGGGAAGTTAGCATGTCTGGGCAAGTAACACTTTCTTTTTGCTTTAGTAACGTATAAATATTTTAAAAATAGGATATACATATTTTTAGGAAAATATTCTTAGCAAACCCAAGATTGGAATCTATGAGTTCATTTTTCACCTA--TTTTTCTACACCTTT-AAAAAAAATTCCCCTTTGGAGATTGAAACAGGAGAAAGGGCAGGGCCCAATATCACACAGGGACAGGAGTTGAAC i macFas5.chr15 C 0 C 0 s papAnu2.chr15 94484510 1658 + 107442819 --------------aaaaaaaacttaatcACAACACATCATCATACttccccaaattaatattttttgatttCATCTAATAtccagtttgttttaaaattttctcaaaaataacttTATGCAGTTGGTGTGTTCAAATAGGCTCTATGCAAAGTC---TACATCGTGCATTTGGTAAATCTCTTAAGCTCTTTCAATATGTGATACTT-CCCCTTCTTCTTTCTGGCTTTCAGGCCATATGTTTGGTCTGCTCAGTTTTCCACAGTCTGGATCTTGATGAATTGCATTCTTATGGTGTAACTAATACATTCTTTTGCTTCCTGTATTTCCTGTAAGCTGATGTTTACACTTAGATGTTTACACTACACTTGTTTAGACTCAGGTTTGAAtttttttAGCATG-AAAGTTCCAGTTGCACTGTAGAATGTCTGGTGATCCCAAGTGTAGTATTTTTGAGGTTGATCAGTTAAAAAGTAGCTGTTTGGGAGGCAAAGGGCACATGTTAGTCGCTTCTGCATGCCCATTGCCAAGCACAGCATTGTGCCTAGAGCAAGCCCTGGCAATGTTTACTGAGTTGAAGCAGTTGATGAAACCCAGATTTGTGGGACTTCAGATATACATCTACTATTCTCAGCT--GATGCCTAAACTTTATTAATTCACATCTGTATGTtgtaaaaattc-----tattttacGACCTTAGCCAGTTTTGACCAGTTCACCTTGGCTGCAGTTCTTTCTGTTTCATCTTTTTCTCAT-AATAGTGTCAACCTTaaataatgagattcagaaaatatgacTAAGGATAGAGTTTATTCGAGTGCAAAGTTTGAGAATAGTCACTCAAGAAGCGTCAGCTCCAAATGAATATGGTCAGCATTCCCAAGTGGAGAAGTTAAGGTTTCACTTTT----ACAGAGACAAAGACATTTTCAGAGGATTACAACATTTTCCATAGGAGACCAGTGCATACATTAAAGCAATTTGATTGGTCACAGATTGCTATGTGCCAAGGAAGATTACTTTATTACTCAATGAGGAGGGGTGGTGATCTGAGGGAGTCTTCTCTCTGGTGTTGTTTGGTCTTCTTAATTAttcacagggggaaaaaaaggcggAAGTTGCAGCTGCATGCCACATGACTCAGGCTGCATAGCCACATTTGTCACAAGGCTCAGAATAACTGAAAGTTCCAATGACTTgaagtttgaattatttaatttcacaatagaaattaaa-------------acaaagattttaacGTTTCTTAATAAGAAG---CCATCTTCATGCAAattgtgaaatttttaaattaa-atctatttttaaagttaGTAATTTACTCAAACGTTGTTTAGACATTGTTTTAGAAACTGGAATCTTGAGTGTCTATGCCTGTCATCTTTCATGATGAATGGTCCCTATTTATTTGCAAAACTTGCCAATCTGCCAAAGCGTTATTTGCTGGGAAGTTAGCATGTCTGGGCAAGTAacactttctttttgctttagtaacgtataaatattttaaaaataggatatacatatttttaggaaaatattcTTAGCAAACCCAAGATTGGAATCTATGAGTTCATTTTTCACCTA--TTTTTCTACACCTTT-AAAACAAATTCCCCTTTGGAGATTGAAACAGGAGAAAGGGCAGGGCCCAATATCACACAGGGACAGGAGTTGAAC i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 98696565 1651 + 108555830 --------------aaaaaaaacctaatcacaacacattatcatacttccccaaattaatatttcttgatttcatctaatatcca----gttttaaaattttctcaaaaataactttatgcagttggtgtgttcaaataggctctatgcaaagtc---tacatcgtgcatttggtaaatctcttaagctctttcaatatgtgatactt-ccccttcttctttctggctttcaggccatatgtttggtctgctcagttttccacagtctggatcttgatgaattgcattcttgtggtgcaactaatacattcttttgcttcccgtatttcctgtaagctgatgtttacacttagatgtttacactacgcttgtttagactcaggtttgaatttttttagcatg-aaAGTTCCAGTTGCACTGCAGAATGTCTGGTGATCCCAAGTGTAGTATTTTTGAGGTTGATCAGTTAAAAAGTAGCTGTTTGGGAGGCAAAGGGCACATGTTAGTCGCTTCTGCATGCCCATTGCCAAGCACAGCATTGCGCCTAGAGCAAGCCCTGGCAATGTTTACTGAGTTGAAGCAGTTGATGAAACCCAGATTCGTGGGACTTCAGATATAAAT---CTCTTCTCAGCT--GATGCCTAAACTTTATTAATTCACATCTGTATGTTGTAAAAATTC-----TATTTTACGACCTTAGCCAGTTTTGACCAGTTCACCTTGGCTGCAGTTCTTTCTGTTTCATCTTTTTCTCAT-AATAGtgtcaaccttaaataatgagattcagaaaatatgactaaggatagagtttattcgagtgcaaagtttgagaatagtcactcaagaagcgtcagctccaaatgaatatggtcagcattcccaagtggagaagttaaggtttcactttt----acagagacaaagacattttcagagggctacaacattttccacaggagaccagggcatacgttaaagcaatttgattggtcacaggttgctatgtgccaaggaagattactttgttactcaatgaggaggggtggtgatctgagggagtcttctctctggtgttgtttggccttcttaattattcacaggggg-caaaaaggcggaagttgcagctgcatgccacgtgactcaggctgcatagccacatttgtcacaaggcccagaattactgaaagttccaatgacttgaagtttgaattatttaatctcacaATAGAAATTTAA-------------ACAAAGATTTTAATGTTTCTTAATAAGAAG---CCATCTTCAAGCAAATTGTGAAATTTTTAAATTAA-ATCTATTTTTAAAGTTAGTAATTTACTCACACGTAGTTTAGACATTGTTTTAGAAACTGGCATCTTGAGTGTCTATGCCTGTCATCTTTCATGATGAATGGTCCCTATTTATTTGCAAAACTTGCCAATCTGCCAAAGCGTTATTTGCTGGGAAGTTAGCATGTCTGGGAAAGTAACACTTTCTTTTTGCTTTAGTAATGTATAAATATTTTAAAAATAGGATATACATATTTTTAGGAAAATATTCTTAGCAAACCCAAGATTGGAATCTATGAGTTCATTTTTCCCCTA--TTTTTCTACACCTTTAAAAAAAAATTCCCCTTTGGAGATTGAAACAGGAGAAAGGGCAGGGCCCAATATCACACAGGGACAGGAGTTGAAC i chlSab2.chr12 I 302 I 115 s calJac3.chr1 77100106 1675 + 210400635 taaaaaaaaaaaaaaacaaaaacctattcacaacacattatcatactttcccaaattaatatttcttaatttcatctaatacccagtttgttttaaatttttcttaaaaataaacttatgcagttggtgtgttcaaataagctctatgcaaagtctattacatcgtgcatttgataaatctcttaagctctttcaatatgtgatacttccccctttttttttctggctttcatgccatatgtttggtctgctcaattttccacagtctggatcttgatgaattgcattcttatagtgtaactaacacattctttcac---------ttcctgtaagctgatgtttacacgtagagg-----------cttgtttagactcaggtttgaatttttttAGCATGAAAAGTTCCAGTCACAGTGCAGAGTGTCTGATGATCCCAGGTTTGGTACTTTTTAGGTTGATCAGTTTAAAAGTAGCTGTTGGGGAGGC-AAGGGCACGTATCAGTTTCCTCTGCACGCCCATTGTCAAGCAGAGCATTGTGCCTAGAGCAAGCCCCGGCAATGTTAACTGAGTTGACGCAGCTGATGAAACCCAGATTTTTGGGACCTCAGATACAAATCTACTATTCTCAGCTGAGATGCCTAAACTTTATTAATTCACATCTGTACGTCGTAAAAATTC-----TATTTTATGACCTTAGCCAGTTTTGACCAGTTCACCTTGACTGCGG----TTCTGTTTCATCTTTTTCTCATAAATAGCCtcaaccttaaataatgagattcag-aaatatggctaagtatagagtttattcgagtacagagcttgaggataaccactcaggaagtatcagctccaaatgaatatggtcagcattcccaagtggagaagttaaggtttcacttttacagacggagacaaagacattttcagaaaatcacaacatttttcacaggagaccaatgcatacattacagggagctgattggtcacacgttggtccatgccaaggaagattaccctgttgctcaatgaggaggggtagtgatctgagagggtcttctctctagtgctgtttggtcttcctaattattcacagggaaaaaaaatggcggaagttgcagctgcatgccacgtgattcaggctgcatagccacgtttgtctcaaggctgagaataactt-aagttccatcaacttgaagtctgaattatttaatttcacaATAGAAATTAAAACAATAAAATTTTACAAAGATTTTAATGTTTCTTAATAAGAAGAAGCCGTCTTTATGCAAATTGTGaaattttaaactaaatatatatttttaaaGTTAGTAATTTACTCAAATGTTGTTTAGACATTGTTTTAGAAACTGGAATTTTGAGTGTCTATGCTTGTCATCTTTTATGATGAATGGTCGCTGTTTATTTGCAAAACTTGCCAATCTACCAAAGCTTTATTTGCTGGGAAGTTAGCATGTCTGGGAAAGTAACACTTTCTTTTCACTTTAGTAATGTATAAATATTTTTAAAATAGGATATACATATTTTTAGGAAAATATTCTTAGCAAACCTAAGATTGGAATCTGTGAGTTCATTTTTCCCCCATTTTTTTCTATACCTTT--AAAAAAATTCCCCTTTGGAGATTGAAACAGGAGAAAGGATAGGGGCCAATATCACACAGGGACAGGAGTTGAGC i calJac3.chr1 C 0 C 0 a score=809945.000000 s hg38.chr9_GL383542v1_alt 20225 274 + 60032 CTGGGAGAGTCTTGTATTCAGGACCCAAACTGGGTGCAGGGCTGGCTCATTAGGAGTTGAAATGCCTCTGCACCAGTCACGGGTGGAAATAGGTGCATTCACATGAACATGGTTGCATCAGCTTCATCCACAGGA-GCCCTGAACCCGTCATTAACCTGTGATCTGGTTGGAATCTATGTACCCTATGGGTCAATGTGAAATTACTTCTCAGGGAGGCAACCACAGCTGAGGGAGTCCACAAGGTAAAATTTCCACAGAAGATAAACTCACATGT s panTro4.chr9 86963932 274 + 137840987 CTGGGAGAGTCTTGTATTCAGGACCCAAACTGGGTGCAGGGCTGGCTCATTAGGAGTTGAAATGCCTCTGCACGAGTCACGGGTGGAAATAGGTGCATTCACATGAACATGGTTGCATCAGCTTCATCCACAGGA-GCCCTGAACCCGTCATTAACCTGTGATCTGATTGGAATCTATGTACCCTATGGGTCAATGTGAAATTACTTCTCAGGGAGGCAACCACAGCTGAGGGAGTCCACAAGGTAAAATTTCCACAGAAGATAAACTCACATGT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83595476 274 + 135191526 CTGGGAGAGTCTTGTATTCAGGACCCAAACTGGGTGCCGGGCTGGCTCGTTAGGAGTTGAAATGCCTCTGCACCAGTCACGGGTGGAAATAGGTGCATTCACATGAACATGGCTGCATCAGCTTCATCCACAGGA-GCCCTGAACCCGTCATTAACCTGTGATCTGGTTGGGATCTATGTACCCTGTGGGTCAATGTAAAATTACTTCTCAGGGAGGCAACCACAGCTGAGGGAGTCCACAAGGTAAAATTTCGACAGAAGATAAACTCACATGT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76113959 274 - 122973662 CTGGGAGAGTCTTGTATTCGGGACCCAAACTGGGTGCAGGGCTGGCTCGTTAGGAGTTGAAATGCCTTTGCACCAGTCACGGGTGGAAATAGGTGCATTCACATGAACATGGCTGCATCAGCTTCATCCACAGGA-GCCCTGAACCCGTCATTAACCTGTGATCTGGTTGGGATCTATGTACCTTGTGGGTCAATGTGAAATTACTTCCCAGGGAGACAACCACAGCTGAGGGAGGCCACAAGGTAAAATTCCCACAGAAGATAAACTCACATGT i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 97552769 275 + 112192347 CTGGGAGAGTCTCATATTCAGGACCCACACTGGGTGCAGGGTTGGCTCGTTAGGAGTTGGAATGCCTCTGCATCAGTCACAGGTGGAAATAGGTGCATTCACATGAACACGGCTGCATCAGCTTCATCCACAGGATATCATGAGCCCGTCATTAACCTGCGATCTGGTTAGGATCTATGTACCCTGTGGGTCAATGTGAAATTACTTCCTAGAGAGACAGCCACAGCTGAGGGAGCCCACAAGGTAAAATTCCCACAGAAGATAAACTCACATGT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 98772831 275 + 112612857 CTGGGAGAGTCTCATATTCAGGACCCACACTGGGTGCAGGGTTGGCTCGTTAGGAGTTGGAATGCCTCCGCATCAGTCACAGGTGGAAATAGGTGCATTCACATGAACACGGCTACATCAGCTTCATCCACAGGATATCATGAGCCCGTCATTAACCTGCGATCTGGTTAGGATCTATGTACCCTGTGGGTCAATGTGAAATTACTTCCTAGAGAGACAGCCACAGCTGAGGGAGCCCACAAGGTAAAATTCCCACAGAAGATAAACTCACATGT i macFas5.chr15 C 0 I 303 s papAnu2.chr15 94486168 275 + 107442819 CTGGGAGAGTCTCATATTCAGGACCCACACTGGGTGCAGGGCTGGCTCCTTAGGAGTTGGAATGCCTCTGCATCAGTCACAGGTGGAAATAGGTGCATTCACATGAACACGGCTGCATCAGCTTCATCCACAGGATATCCTGAGCCCGTCATTAACCTGCGATCTGGTTAGGATCTATGTACCCTGTGGGTCAATGTGAAATTACTTCCTAGAGAGACAGCCACAGCTGAGGGAGCCCACAAGGTAAAATTCCCACAGAAGATAAACTCACATGT i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 98698331 275 + 108555830 ctgggaGAGTCTTATATTCAGGACCCACACTGGGTGCAGGGCTGGCTCGTTAGGAGTTTGAATGCCTCTGCATCAGTCACAGGTGGAAATAGGTGCATTCACATGAACACGGCTGCATCAGCTTTATCCACAGGATATCCTGAGTCGGTCATTAACCTGCGATCTGGTTAGGATCTATGTACCCTGTGGGTCAATGTGAAATTACTTTCTAGAGAGAGAACCACAGCTGAGGGAGCCCACAAGGTAAAATTCCCACAGAAGATAAACTCACATGT i chlSab2.chr12 I 115 C 0 s calJac3.chr1 77101781 265 + 210400635 CTCAGAGAGTCACATATTCAGGGCCCA-AGTGGGTGCAGGGCTACCTTGTTAGAAGTTGGAATGCCTCTGCACCAGTCATGGGTGGAA--------ATTCACATGAACATGGCTGCATCAGCTTCATCCACCAGA-GCCCTGAGCCTGTCATTAACCTGTGATCTGGTTGGGATCTATGTACCCTGTGGGTCAACGTGAAATTACTTCACAGGGATATAACCACAACTGAGGGAGCCCACAAAGTAAAATTCCCACGGAAGATAAACTCACATGT i calJac3.chr1 C 0 C 0 a score=829486.000000 s hg38.chr9_GL383542v1_alt 20499 282 + 60032 AAGAACTGCAAAAAACATACAAGAATGTCTAGTATCGTGACAATAGTAAACCCAGGTCTGCTGCATACAGATTGTATGTACGATCGTAGGTGTGTAATTCACATTGATCACAATTGCACACTCATACACACACCCCATGCAAAACCTTACGGTAGGAATTCTAAAGTGACCTGATAAAAATATTGAATCCTCAAATTGATAAAGTAGAGAATGACATTTGTGGAACAAGAACATTCAAAATTTTAAAATGCCATTATGGCAAGGGAACAGATGAGTATTTTT s panTro4.chr9 86964206 278 + 137840987 AAGAACTGCAAACAACATACAAGAATGTCTAGTATCGTGACAATAGTAAACCCAGGTCTGCTGCATACAGACCGTA----CGATTGTAGGTGTGTAATTCACATTGATCACAATTGCACACTCATACACACACCCCATGCAAAACCTTACGGTAGGAATTCTAAAGTGACCTGATAAAAATATTGAATCCTCAATTTGATAAAGTAGAGAATGACATTTGTGGAACAAGAACATTCAAAATTTTTAAATGCCATTATGGCAAGGGAACAGATGAGTATTTTT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83595750 278 + 135191526 AAGAACTGCAAAAAACATACAAGAATGTCTAGTATCGTGACAATAGTAAACCCAGGTCTGCTGCATACAGATCGTA----CGATTGTAGGTGTGTAATTCACATTGATCACAATTGCACACTCATACACACACCCCATGCAAAACCTTACAGTAGGAATTCTAAAGTGACCTGATAAAAATATTGAATCTTCAAATTGATAAAGTAGAGAATGACATTTGTGGAACAAGAACATTCAAAATTTTAAAATGCCATTATGGCAAGAGAACAGATGAGTATTTTT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76114233 278 - 122973662 AAGAATTGCAAAAAGCATACAAGAATGTCTAGTATTGTGATAATAGTAAACCCAGGTCTGCTGCATACAGACTGTA----CGATTGTAGGTGTGTAATTCACACTGATCACAATTGCACACTCATACACACACCCCATGCAAAATCTTATGGTAGGAATTCTAAAGTGACCTGATAAAAATATTGAATCCTCAAATTGATTAAGCAGAGAATGACATTTGTGGAACAAGAACATTCAAAATTTTAAAATGCCATTATGGCAAGGGAACAGATCAGTATTTTT i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 97553044 278 + 112192347 AAGAATTGCAAAAAACATAAGAGAATGTCTAGTGTCGTGACAATAGTAAACCCGGGTCTGCTGCGTACAGACGGTA----TAATTGTAGGCATGTAATTCACATTGATCACAGTTGCACACTCAAACACACACCCCATGCAAAATCTTACCGTAGGAATTCTAAAGCGACCTGATAAAAATATTGAATCCTCAAACTGATAAAGTAGAGAATGACATTTGTGGAACAAGAACATTCGAAATTTTAAAATGCCATTATGGCAAGGGAACGGATGAGTATTTTT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 98773409 278 + 112612857 aagaaTTGCAAAAAACATAAGAGAATGTCTAGTGTCGTGACAATAGTAAAACCGGGTCTGCTGCGTACAGACGGTA----TAATTGTAGGCATGTAATTCACATTGATCACAGTTGCACACTCAAACACACACCCCATGCAAAATCTTACCGTAGGAATTCTAAAGCGACCTGATAAAAATATTGAATCCTCAAACTGATAAAGTAGAGAATGACATTTGTGGAACAAGAACATTCGAAATTTTAAAATGCCATTATGGCAAGGGAACGGATGAGTATTTTT i macFas5.chr15 I 303 C 0 s papAnu2.chr15 94486443 278 + 107442819 AAGAATTGCAAAAAACATAAGAGAATGTCTAGTGTCGTGACAATAGTAAAACCGGGTCTGCTGCATACAGACGGTA----TAATTGTAGGCGTGTAATTCACATTGATCACAGTtgcacactcaaacacacacccCATGCAAAATCTTACCGTAGGAATTCTAAAGCGACCTGATAAAAATATTGAATCCTCAAACTGATAAAGTAGAGAATGACATTTGTGGAACAAGAACATTcgaaattttaaaatgccattatgGCAAGGGAACggatgagtattttt i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 98698606 278 + 108555830 AAGAATTGCAAAAAACATAAGAGAACGTCTAGTGTCGTGACAATAGTAAAACCGGGTCTGCTGCATATAGACGGTA----TAATTGTAGGCATGTAATTCACATTGATCACAGTTGCACACTCAAACTCACACCCCATGCAAAACCTTACAGTAGGAATTCTAAAGCGACCTGATAAAAATATTAAATCCTCAAACTGATAAAGTAGAGAATGACATTTGTGGAACAAAAACATTTGAAATTTTAAAATGCCATTATGGCAAGGGAATGGATGAGTATTTTT i chlSab2.chr12 C 0 C 0 s calJac3.chr1 77102046 278 + 210400635 AAGAATTGCGAAAAACATACAGGAATGTCTAGTATTGTGAAAATAGTAAACCCAGGTCTGCTGCATGCAGACCATA----CAATCATAGGTGTGTAATTCACAGTGATCACAATTGCACACTCATACATACAACACATGCAAAACCTTACAGTAGGAATTCTAAAGTGACCTGATAAAAATATTGAATCCTCAGATTGATAAAGGAGGGAATGATATTTGTGGAACAAGAACATTCAAAATTTTAAAATGCCATTCTGGCAAGGGAATGGATGCGTATTTTT i calJac3.chr1 C 0 C 0 a score=676490.000000 s hg38.chr9_GL383542v1_alt 20781 291 + 60032 AAAAAATCAGATCTCTGGCCTGGAGTGGTGGCTCAC----------------------GGggccaaggtgggtggataacttgaggtcaggagt----tcaagacagaccaggctggccaacatggtgaaaccccatctctactaaaaatacaaacattagctgggcatgatggcatgtgcctgtaatcccagctacttgggagattgaggctggagaatcacttgaacccgggaggcagaggttggagtgagccaagatcacgccattgcactccagcctgggcaacaagagcgaaattacatctcagagaaaaaa s panTro4.chr9 86964484 291 + 137840987 AAAAAATCAGATCTCTGGCCTGGAGTGGTGGCTCAC----------------------GGggccaaggtgggtggataacgtgaggtcaggagt----tcaagacagaccaggctggccaacatggtgaaaccccatctctactaaaaatacaaacattagctgggcatgatggcacatgcctgtaatcccagctacttgggagattgaggctggagaatcacttgaacccgggaggcagaggttggagtgagccaagatcacgccattgcactccagcctgggcaacaagagcgaacttacatctcagagaaaaaa i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83596028 295 + 135191526 TAAAAATCAGATCTCTggccgggagtggtggctcac----------------------ggggccaaggcgggtggataacttgaggtcaggagttcaatcaagacagatcagcctggccaacatggggaaactccatctctactaaaaatacaaacattagctgggcatggtggcacgtgcctgtaatcccagctacttgggagattgaggcaggagaatcacttgaacctgggaggcggaggttggagtgagccaagatcacgccattgcactccagcctgggcaacaagagtgaaattacatctcagagaaaaaa i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76114511 313 - 122973662 ACAAAATCAGATCTCTggccgggagtggtggctcacatctgtaatctcggcactttgggaggctgaggcaggtggataacttgaggtcaggagt----tccagacagaccagcctggccaacatggtgaaaccccatctctactaaaaatacaaacattagctgggcatggtggcacgtgcctgtaatcccagctacttgggagattgaggcaggagaatcacttgaacctgggaggcggaggttggagtgagccaagatcacgccattgcactccaacctgggcaacaagagcaaaattccatctcagagagagaa i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 97553322 309 + 112192347 TAAAAATCAGATCTGTggccgggagtggtggctcacgtctgtaatcccagcactttggaaggctgaggcaggcagatcacttggggtcaggagt----ttgagac----cagcctggctaacatggtgaaaccccgtctctactaaaaatacaaacattagctgggcatggtggcacgtgcctgtaatcccagctactcaggagactgaggcaggagaatcacttgaacccaggaggcggaggttggagtgagccaagatcacgccattgcactccagcctgggcaacaagagtgaaatcccatctcagagaaaaaa i rheMac3.chr15 C 0 C 0 s macFas5.chr15 98773687 309 + 112612857 TAAAAATCAGATCTGTggccgggagtggtggctcacgtctgtaatcccagcactttggaaggctgaggcaggcagatcacttggggtcaggagt----ttgagac----cagcctggctaacatggtgaaaccccgtctctactaaaaatacaaacattagctgggcatggtggcacgtgcctgtaatcccagctactcaggagactgaggcaggagaatcacttgaacccaggaggcggaggttggagtgagccaagatcacgccattgcactccagcctgggcaacaagagtgaaattccatctcagagaagaaa i macFas5.chr15 C 0 C 0 s papAnu2.chr15 94486721 309 + 107442819 taaaaatcagatctgtggccgggagtggtggctcacgtctgtaatcccagcactttggaaggttgaggcaggcagattacttggggtcaggagt----ttgagac----cagcctggctaacatggtgaaacctcgtctctactaaaaatacaaacattagctgggcatggtggcacgtgcctgtaatcccagctactcaggagactgaggcaggagaatcacttgaacccaggaggcggaggttggagtgagccaagatcacgccattgcactccagcctgggcaacaagagtgacattccatctcagagaagaaa i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 98698884 309 + 108555830 AAAAAATCAGATCTCTggccgggagtggtggctcatgtctgtaatcccagcactttggaaggctgaggcaggcagatcacttggggtcaggagt----ttgagac----cagcctggccaacatggtgaaaccccgtctctactaaaaatacaaacattagctgggcatggtggcacgtgcctgtgatcccagctactcaggagactgaggcaggagaataacttgaacccaggaggcaggggttggagtgagccaagatcacgccattacactccagcctgggcaacaagagtgaaattccatctcagagaagaaa i chlSab2.chr12 C 0 C 0 e calJac3.chr1 77102324 0 + 210400635 C a score=440995.000000 s hg38.chr9_GL383542v1_alt 21072 188 + 60032 aaaaaa------------TCAGATCTCTTGATAATTTAAAATCTCTGAATATAGACTAAATAGAGGACATATCAAGGAGCAAAATAATTAGCAAAttaaaaaagaaaactgagaaaatctcctagtacagagcagagatgaagagatggaaattagaaaaaaaaaa--gtgaagagacatgATATAAATTTAAAGAAATgtc s panTro4.chr9 86964775 193 + 137840987 aaaaaa---------aaaTCAGATCTCTTGATaatttaaaatctctgaatatagactaaatagaggacatatcaaggagcaaaataattagcaaattaaaaaagaaaactgacaaaatctcctagtacagagcagagatgaagagatggaaattagaaaaaaaaaaaagtgaagagacatgATATAAATTTAAAGAAATgtc i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83596323 185 + 135191526 aaa---------------TCACATCTCTTGATaatttaaaatccctgaatatagact-aatagaggacatatccaggagcaaaataattagcaaattaaaaaagaaaactgagaaaatctcctagtacagagcagagatgaagagatggaaattagaaaaaaaaaa-agtgaagagacatgATATAAATTTAAAGAAATgtc i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76114824 189 - 122973662 aaaaaa------------TCAGATCTCTTGATAATTTAAAATCTCTGAATATAGACTAAATAGAGGACATATCCAGGAGCAAAATAATTAGCAAAttagaaaagaaaactgagaaaatttcctagtacagagcagagatgaagagatggaaattagaaaaaaaaaa-agtgaagagacatgATATAAAGTTAAAGAAATgtc i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 97553631 176 + 112192347 gcaaaaacaaaaacaaaaaCAGATCTCTTGATAATTTAAAATC-----------------TAGAGGACAAATCCAGGAGCAAAATAATTAGCAAATTTAAAAAGAAAACTGAGAAAGTCTCCTAGTACAGAGC--------AGAGATGGAAATTAGAAAAAAAAAT-AGTGAAGAGACATGATATAAATTTAAAGAGATgtc i rheMac3.chr15 C 0 C 0 s macFas5.chr15 98773996 176 + 112612857 aaaaaaacaaaaacaaaaaCAGATCTCTTGATAATTTAAAATC-----------------TAGAGGACAAATCCAGGAGCAAAATAATTAGCAAATTTAAAAAGAAAACTGAGAAAGTCTCCTAGTACAGAGC--------AGAGATGGAAATTAGAAAAAAAAAT-AGTGAAGAGACATGATATAAATTTAAAGAGATgtc i macFas5.chr15 C 0 C 0 s papAnu2.chr15 94487030 175 + 107442819 aaaaaaa-aaaaccaaaaacagatcTCTTGATAATTTAAAATC-----------------TAGAGGACAAATCCAGGAGCAAAATAAttagcaaatttaaaaagaaaactgagaaagtcTCCTAGTACAGAGC--------AGagatggaaattagaaaaaaaaat-agtgaagagacatgatataaatttaaagagatgtc i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 98699193 167 + 108555830 aaaaaa--aaaacaaaaaCCAAATCTCTTGATAATTTAAAATC-----------------TAGAGGACA-----GGGAGCAAAATAATTAGCAAATTTAAAAAGAAAACTGAGAAAGTCTCCTAGTACAGAGC--------AGAGATGGAAATTAG--AAAAAAAT-AGTGAAGAGATATGAAATAAATTTAAAGAGATgtc i chlSab2.chr12 C 0 C 0 s calJac3.chr1 77102324 185 + 210400635 AAAAAA------------TCATATCGCTTGATAGTTTAAAATCTCTAAATATAGACCAAATAGAGGACATATCCAGGAACAAAATAATTAGCAAAGTAAaaaagaaaactgagaaaatctcctagtacagagcagaggcaaagagatggaaatt----aaagaaaa-agtgaagagatacgatataagtttaaagaaatatc i calJac3.chr1 C 0 I 94 a score=773835.000000 s hg38.chr9_GL383542v1_alt 21260 340 + 60032 aacatggtgaaaccccgtctctactaaaaatacaaaattttagtattttagctgggctaaaatttagctgggcatggtggcgcgtgcctgtagtcctagcgacttgggaggctgagacaggagaattgcttgaacccgggaagcggaggttgtagtgagctgagatcacgccactgtgctccagcctggtgacagagcaggagcctcaaaagaaaaaaaaaaagaaaCgtttgaaagagtgaaaaaaatgaatgttaaaaatggaataattaggccaggtgcagtggctcacacctgtaatcccagcactttgggaggccgaggcaggtggat----------catgaga s panTro4.chr9 86964968 340 + 137840987 aacatggtgaaaccctgtctctactaaaaatacaaaattttagtattttagctgggctaaaatttagctgggcatggtggtgcgtgcctgtagtcctagcgacttgggaggctgagacaggagaattgcttgaacccgggaagcggaggttgtagtgagctgagatcgcgccactgtgctccagcctggtgacagagcaggagtctcaaaagaaaaaaaaaaagaaaCGTTTgaaagagtgaaaaaaatgaatgttaaaaatggaataattaggccgggtgcagtggctcacacctgtaatcccagcactttgggaggccgaggcaggtgtat----------catgaga i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83596508 350 + 135191526 aacatggtgaaaccccgtctctactaaaaatacaaaattttactattttagctgggctaaaatttagctgggcatggtggtgcgtgcctgtagtcttagctacttgggaggctgagacaggagaattgcttgaacccgggaggcggaggttgtagtgagccaagatcgtgccactgtgctccagcctggtgacagagtgggagtctcaaaagaaaaaaaaaaagaaaCGTTTGAAAGAGTGAAAAAAATGAATGTTAAAAATGTAATAATTAggccgggtgcagtggctcacacctgaaatcccagcactttgggaggccgaggcaggtggatcatgagatcacatgaga i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76115013 335 - 122973662 aacatggtgaaaccccatctctactaaaagtacaaaattttagtattttagctgggctaaaatttagctgggcatggtagcacgtgcctgtagtcctagctacttgagaggctgaggc---agaattgcttgaacccgggaggtggaggttgtagtgagccgagattctgccactgtgctccagcctggcgacagagtgggagtctcaaaag-aaaaaaaaaagaaaTGTTTGAAAGAGTG-Aaaaaatgaatgttaaaaatgtaataattaggccgggtgcagtggctcacgcctgtaatcccagcactttgggaggccgaggcaggtggat----------cacgaga i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 97553807 336 + 112192347 aacatggtgaaaccctgtctctactaaaaatacaaaattttagtattttagctgggataaaatttagctggacatggtggcacgtgcctgtagtcccagctacttgggaagctgaggcaggagaattgcttgaacctgggaggtggaggttgtagtgagccgagatggtgccactgcactccagcctggcgacacagcagcagtctcaaaag----aaaaaaagaaaTGTCTgaaagagtaaaaaaaaagaatattaaaaatgtaataattaggccagatgcagtggctcacgcctataatcccagcactttgagaggctgaggcagctggat----------cacgaga i rheMac3.chr15 C 0 C 0 s macFas5.chr15 98774172 336 + 112612857 aacatggtgaaaccctgtctctactaaaaatacaaaattttagtattttagctgggataaaatttagctggacgtggtggcacgtgcctgtagtcccagctacttgggaagctgaggcaggagaattgcttgaacctgggaggtggaggttgtagtgagccgagatggtgccactgcactccagcctggcgacacagcagcagtctcaaaag----aaaaaaagaaaTGTCTgaaagagtaaaaaaaatgaatattaaaaatgtaataattaggccagatgcagtggctcacgcctgtaatcccagcactttgagaggctgaggcagctggat----------cacgaga i macFas5.chr15 C 0 C 0 s papAnu2.chr15 94487205 336 + 107442819 aacatggtgaaaccccgtctctactaaaaatacaaaattttagtattttagctgggataaaatttagctggacgtggtggcacgtgcctgtagtcccagctacttgggaggctgaggcaggagaattgcttgaacccgggaggtggaggttgtagtgagccgagatggtgccactgcactccagcctggcgacacagcagcagtctcaaaag----aaaaaaagaaatgtctgaaagagtaaaaaaaatgaatattaaaaatgtaataattaggccagatgcagtggctcacgcctgtaatcccagcactttgagaggctgaggcagctggat----------cacgaga i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 98699360 336 + 108555830 aacatggtgaaaccccgtctctactaaaaatacaaaattttagtattttagctgggataaaatttagctggacgtggtcgcacgggcctgtagtcccagctacttgggaggctgaggcaggagaactgcttgaaccggggaggtggaggttgtagtgagccgagatggtgccactgcactccagcctggcgtcgcagcagcagtctcaaaag----aaaaaaagaaaTGTCTgaaagagtgaaaaaaatgaatattaaaaatgtagtaattaggccagatgcagtggctcacgcctgtaatcccagcactttgagaagctgaggcagctggat----------cacaaga i chlSab2.chr12 C 0 C 0 e calJac3.chr1 77102509 94 + 210400635 I a score=16248.000000 s hg38.chr9_GL383542v1_alt 21600 10 + 60032 tcaggagatt s panTro4.chr9 86965308 10 + 137840987 tcaggagatt i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83596858 10 + 135191526 tcaggaaatt i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76115348 10 - 122973662 tcaggagatc i nomLeu3.chr1a C 0 C 0 s macFas5.chr15 98774508 10 + 112612857 tcaggagatg i macFas5.chr15 C 0 C 0 s papAnu2.chr15 94487541 10 + 107442819 tcaggagatg i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 98699696 10 + 108555830 tcaggagatg i chlSab2.chr12 C 0 C 0 e calJac3.chr1 77102509 94 + 210400635 I e rheMac3.chr15 97554143 0 + 112192347 C a score=233416.000000 s hg38.chr9_GL383542v1_alt 21610 228 + 60032 gagaccatcc-------------------------------------------------------tggtggcacgtgcctgtagtcccagctactcaggaggctgaggcaggagaattgcttaaacccgggaggcagaggttgcagtgagcccagatcgtgccactgcactctagcctgggtgacagaacaagactccatctcaaaaaaaaaaaaaaaaa------------------------------------------------------------gtaataattaaagagatgaaagctgagattttcctaaactgaaagataggagttttttcattg s panTro4.chr9 86965318 236 + 137840987 gagaccatcc-------------------------------------------------------tggtggcacgtgcctgtagtcacagctactcgggaggctgaggcaggagaattgcttaaacccgggaggcagaggttgcagtgagcccagatcgtgccactgcactctagcctgggtgacagaacaagactccatctcaaaaaaaaaaaaaaaaaa----------------------------------------------------aaaaaaagtaataattaaagagatgaaagctgagattttcctaaattgaaagataggagttttctcattg i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83596868 228 + 135191526 gagaccatcc-------------------------------------------------------tggtggcacgtgcctgtagtcccagctactcgggaggctgaggcaggagaattgcttgaacccaggaggcagaggttgcagtgagccaagatcgtgccactgcactctagcctgggtgacagagcaagactccatctcaaaaaaaaaaaaaaaaa------------------------------------------------------------GTaataattaaagagatgaaagctgagattttcctaaattgaaagataggagttttttcattg i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76115358 287 - 122973662 gagaccatcc-------------------------------------------------------tggtggcacatgcctgtagtcccagctactcaggaggctgaggcaggagaattgcttgaacccgggagg-agaggttgcagtgagccgagattgtgccactacactctagcctgggtgacagagcaagactccgtctcaaaaaaaaaaaaaaaaaataataataataataataataattaaagagatgaaagctgagattttaataataataataataataattaaagagatgaaagctgagattttcctgaattgaaagacatgagttttttcatta i nomLeu3.chr1a C 0 C 0 s papAnu2.chr15 94487551 228 + 107442819 gaaaccatcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaaattagccaggagtggcggcacgtgcctgtagtcccagctactcgggaggctgaggcaggagaattgcttgaacccaggaggcagaggttgcagtgagccgagaccgtgccactgcactccagcctgggtgacagag-------------------------------------------------------------------------------------------------------------------gagattTTCCTAAATTGAAAGACATgagctttttcattt i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 98699706 282 + 108555830 gaaaccatcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaaatgagccaggtgtggcggcatgtgcctgtagtcccagctactcgggaggctgaggcaggagaattgcttgaacccaggaggcagaggttgcagtgagccgagaccatgccactgcactccagcctgggcgacagagcaagactctgtctgaaaaaaaaaaaaaaaa-------------------------------------------------------------gtaataattaaagagatgaaagttgagattttcctaaattgaaagacatgagttttttcattg i chlSab2.chr12 C 0 C 0 e calJac3.chr1 77102509 94 + 210400635 I e macFas5.chr15 98774518 0 + 112612857 C e rheMac3.chr15 97554143 0 + 112192347 C a score=9915.000000 s hg38.chr9_GL383542v1_alt 21838 19 + 60032 aaaaattctacctaatgtt s panTro4.chr9 86965554 19 + 137840987 aaaaattctacctaatgtt i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83597096 19 + 135191526 aaaaattctacctaatgtt i ponAbe2.chr9 C 0 C 0 s papAnu2.chr15 94487779 19 + 107442819 aaaaattgtacctaatgtt i papAnu2.chr15 C 0 I 579 e calJac3.chr1 77102509 94 + 210400635 I e chlSab2.chr12 98699988 0 + 108555830 C e macFas5.chr15 98774518 0 + 112612857 C e rheMac3.chr15 97554143 0 + 112192347 C e nomLeu3.chr1a 76115645 0 - 122973662 C a score=18187.000000 s hg38.chr9_GL383542v1_alt 21857 67 + 60032 ggctgggcgtggtggctcacgctgtaatcccagcactttgggaggccgaggcaagtggatcatgagg s panTro4.chr9 86965573 67 + 137840987 ggctgggcgtggtggctcacgctgtaatcccagcactttgggaggccgaggcaagtggatcatgagg i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83597115 67 + 135191526 ggccgggcgcggtggctcacactgtaatcccagcactttgggaggccgaggcgggtggatcatgagg i ponAbe2.chr9 C 0 C 0 e calJac3.chr1 77102509 94 + 210400635 I e chlSab2.chr12 98699988 0 + 108555830 C e papAnu2.chr15 94487798 579 + 107442819 I e macFas5.chr15 98774518 0 + 112612857 C e rheMac3.chr15 97554143 0 + 112192347 C e nomLeu3.chr1a 76115645 0 - 122973662 C a score=5055.000000 s hg38.chr9_GL383542v1_alt 21924 10 + 60032 tcaggagatc s panTro4.chr9 86965640 10 + 137840987 tcaggagatc i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83597182 10 + 135191526 tcaggagatc i ponAbe2.chr9 C 0 C 0 s rheMac3.chr15 97554143 10 + 112192347 tcaggagatg i rheMac3.chr15 C 0 C 0 e calJac3.chr1 77102509 94 + 210400635 I e chlSab2.chr12 98699988 0 + 108555830 C e papAnu2.chr15 94487798 579 + 107442819 I e macFas5.chr15 98774518 0 + 112612857 C e nomLeu3.chr1a 76115645 0 - 122973662 C a score=151544.000000 s hg38.chr9_GL383542v1_alt 21934 192 + 60032 gagaccatcctggctaacatgatgaaaccccgtctctactaaaaaataccaaaaattagccagatgtggtggcggctgcctgtagtcccagctacttgggaggctgaggcaggagaatggcgtgaacctgggaggtggagcttgcagtgaggccaagatcgtgccactgcactccagcctgggcgacagagg s panTro4.chr9 86965650 192 + 137840987 gagaccatcctggctaacatgatgaaaccccgtctctactaaaaaataccaaaaattagccagatgtggtggcggccgcctgtagtcccagctacttgggaggctgaggcaggagaatggcgtgaacctgggaggtggagcttgcagtgaggccaagatcgtgccactgcactccagcctgggcgacagagg i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83597192 189 + 135191526 gagaccatcctggctaacatgatgaaaccccgtctttactaaaaaatacaaaaaattagccggacgtggtggcggccgcctatagtcccagctacttgggaggctgaggcaggagaatggcgtgaacctgggaggcagagcttgcagtgaggccaagatcg---ctgtgcactccagcctgggcaacagagg i ponAbe2.chr9 C 0 C 0 s rheMac3.chr15 97554153 190 + 112192347 gaaaccatcctggccaacatggtgaaaccccgtctctact-aaaaatacaaaaaattagccaggtgtggcggcacgtgcctgtagtcccagctactcgggaggctgaggcaggagaattgcttgaacccaggaggcagaggttgcagtga-gccgagaccgtgccactgcactccagcctgggcgacagagg i rheMac3.chr15 C 0 I 34 s macFas5.chr15 98774518 190 + 112612857 gaaaccatcctggccaacatggtgaaaccctgtctctact-aaaaatacaaaaaattagccaggtgtggcggcacgtgcctgtagtcccagctactcgggaggctgaggcaggagaattgcttgaacccaggaggcagaggttgcagtga-gccgagaccgtgccactgcactccagcctgggcgacagagg i macFas5.chr15 C 0 C 0 e calJac3.chr1 77102509 94 + 210400635 I e chlSab2.chr12 98699988 0 + 108555830 C e papAnu2.chr15 94487798 579 + 107442819 I e nomLeu3.chr1a 76115645 0 - 122973662 C a score=4174.000000 s hg38.chr9_GL383542v1_alt 22126 26 + 60032 gagactccgtctca--aaaaaaaaaa--ga s panTro4.chr9 86965842 28 + 137840987 gagactccgtctca--aaaaaaaaaaaaga i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83597381 30 + 135191526 gagactccgtctcaacaaaaaaaaaaaaga i ponAbe2.chr9 C 0 C 0 s macFas5.chr15 98774708 23 + 112612857 -agattt--tccta--aattgaaagaca-- i macFas5.chr15 C 0 I 11 e calJac3.chr1 77102509 94 + 210400635 I e chlSab2.chr12 98699988 0 + 108555830 C e papAnu2.chr15 94487798 579 + 107442819 I e rheMac3.chr15 97554343 34 + 112192347 I e nomLeu3.chr1a 76115645 0 - 122973662 C a score=162.000000 s hg38.chr9_GL383542v1_alt 22152 3 + 60032 aaa s panTro4.chr9 86965870 3 + 137840987 aaa i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83597411 3 + 135191526 aaa i ponAbe2.chr9 C 0 C 0 s rheMac3.chr15 97554377 3 + 112192347 att i rheMac3.chr15 I 34 C 0 s macFas5.chr15 98774742 3 + 112612857 att i macFas5.chr15 I 11 C 0 e calJac3.chr1 77102509 94 + 210400635 I e chlSab2.chr12 98699988 0 + 108555830 C e papAnu2.chr15 94487798 579 + 107442819 I e nomLeu3.chr1a 76115645 0 - 122973662 C a score=1500.000000 s hg38.chr9_GL383542v1_alt 22155 1 + 60032 g s panTro4.chr9 86965873 1 + 137840987 g i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83597414 1 + 135191526 g i ponAbe2.chr9 C 0 C 0 s rheMac3.chr15 97554380 1 + 112192347 g i rheMac3.chr15 C 0 C 0 s macFas5.chr15 98774745 1 + 112612857 g i macFas5.chr15 C 0 C 0 s calJac3.chr1 77102603 1 + 210400635 g i calJac3.chr1 I 94 C 0 e chlSab2.chr12 98699988 0 + 108555830 C e papAnu2.chr15 94487798 579 + 107442819 I e nomLeu3.chr1a 76115645 0 - 122973662 C a score=701436.000000 s hg38.chr9_GL383542v1_alt 22156 326 + 60032 aaaaattctacctaatgttaaataaataataattatggaattattatagtaaattcctaactagccccatcatagtaaaactgcagaactttaaagaaaaatctggaaagctatcacagg---------aaaaaaaaagtggtacataaataaagga------attaactatgaatgataaacagatttctcaccagacacaatagatgtcagagcacatagcagtaataagttcacaatactgagatagaataactgactcaagaattctggctgggcatggtggctcacacctgtaatcctagctagcacttttggagcctgaagtgagaggattgctt s panTro4.chr9 86965874 326 + 137840987 aaaaattctacctaatgttaaataaataataattatggaattattgtagtaaattcctaactagccccatcatagtaaaactgcagaactttcaagaaaaatctggaaagctatcacagg---------aaaaaaaaagtggcgcataaataaagga------attaactatgaatgataaacagatttctcaccagacacaatagatgtcagagcacatagcagtaataagttcacaatactgagatagaataactgactcaagaattctggctgggcatggtggctcacacctgtaatcctagctagcacttttggagcctgaagtgagaggattgctt i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83597415 313 + 135191526 aaaaattctacctaatgttaaataag----aat-----aattattgtagtaaattcctagctagccccatcataataaaactgcagaactttaaagaaaaatctggaaagctatcacagg---------aaaaaaaaagtggcgcataaataaagga------attaactatgaatgataaacagatttctcgccagacacaatagatgtcagagcacataggagtaataaattcacaatactgagatagaataactgactcaagaattctggctgggcgtggtggctcacatctgtaatc----ctagcacttttggagcctgaagtgagaggattgctt i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76115645 316 - 122973662 aaaaattttacctaatgttaaataaa---taat-----aattattgtagtaaattcctaactagccccatcatagtaaaactgcagaactttaaaggaaaatctggaaagctatcacagg-------aaaaaaaaaaagtggtgtataaataaagga------attaactatgaatgataaacagatttctcaccagacacaatagaggtcagagcacataggagtaataagttcacaatactgagatagaataactgactcaagaattctggctgggcatggtggctcacacctgtaatc----ctagcacttttggagcctgaagtgagaggattgctt i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 97554381 327 + 112192347 aaaaattgtacctaatgttaaataaa---taat-----aattgttgtagcaaattcctacctagccccatcatagtaaaacttcagaactttaaagaaaaatctggaaagctatcacagg--aaaaaaaaaaaaaaaagtggtgcataaataaaggattaactatgaactatgaacgataaacagatttctcaccagatacaatcaatgtaagagcacataggaatagtaagttcacaatattgagatagagtaactgactcaagaattctggctgggcatggtggctcatacctgtaatc----ctagcacttttggagcctgaagtgagaggactgctt i rheMac3.chr15 C 0 C 0 s macFas5.chr15 98774746 329 + 112612857 aaaaattgtacctaatgttaaataaa---taat-----aattgttgtagcaaattcctacctagccccatcatagtaaaacttcagaactttaaagaaaaatctggaaagctatcacaggaaaaaaaaaaaaaaaaaagtggtgcataaataaaggattaactatgaactatgaacgataaacagatttctcaccagatacaatcaatgtaagagcacataggagtagtaagttcacaatattgagatagagtaactgactcaagaattctggctgggcatggtggctcatacctgtaatc----ctagcacttttggagcctgaagtgagaggattgctt i macFas5.chr15 C 0 C 0 s chlSab2.chr12 98699988 321 + 108555830 aaaaattctacctaatgttaaataaa---taat-----aataattatagtaaattcctagctagccccatcatagtaaaacttcagaactttaaagaaaaatctggaaagccatcacagg--------aaaaaaaaaagtggtgcataaataaaggattaactatggactatgaacgataaacagatttctcaccagatacaatcaatgtaagagcacataggagtagtaagttcacaatattgagatagagtaactgactcaagaattctggctgggcatggtggctcatacctgtaatc----ctagcacttttggagcctgaagtgagaggattgctt i chlSab2.chr12 C 0 C 0 s calJac3.chr1 77102604 312 + 210400635 aagaattctacctaatgttaaataaa---taat-----aagtattgcagtaaattcctaactagccccatcatagtaaaacttca-aagtttaaagaaaaatctggaaagctatcacagg----------aaaaaatagtggtgcataggtaaagga------tttaacaatgaacgataaacaggtttctcaccagacacaacggatgtcagagcatataggagtaattagttcataatattgagatagaataactgactcaagaattctggctgggcatggtggttcacacctgtaatc----ctagcactttggtaggctgaggtgggaggactgctt i calJac3.chr1 C 0 C 0 e papAnu2.chr15 94487798 579 + 107442819 I a score=836799.000000 s hg38.chr9_GL383542v1_alt 22482 331 + 60032 gagtccaggagctcaag-ccaggctgggcaacatggtgagacctcatctttac--aaaaaaaataaaatagaattaggcatggtggtgtgagcctctcatcccagctactcaggaggctgaggtgggaggattgt----------------------------------------gccactgcactccagcccaggcaacagagagagaccatgtctctct------------aaaaaaaaaaaaaattctattaccagccaaattattattcaggaggggtaTACAAAATGATTACCATATGTATTTCCTCTGCCACCAAAATCCCACTAAATAACTGTAAATAATTATAGAGCTATAAATCCACAATGggtcat-atgtttttgt s panTro4.chr9 86966200 331 + 137840987 gagtccaggagctcaag-ccaggctgggcaacatggtgagacctcatctttac--aaaaaaaaaaaaaaagaattaggcatggtggtgtgagcctgtcatcccagctactcaggaggctgaggtgggaggattgt----------------------------------------gccactgcactccagcccaggcaacagagaaagaccatgtctctct------------ctaaaaaaaaaaaattctattaccagccaaattattattcaggaggggtaTACAAAATGATTACCATACGTATTTCTTCTGCCACCAAAATCTCAGTAAATAACTGTAAATAATTATAGAGCTATAAATCCACAATGggtcat-atgtttttgt i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83597728 332 + 135191526 cagtccaggagctcaag-ccaggttgggcaacatggtgagacctcatctctac---aaaaaaataaaaaagaattaggcatggtggtgtgagcctgtcatcccagctacttaggaggctgaggtgggaggattgt----------------------------------------gccactgcactccagcccaggcaacagagtgagaccatgtctctct----------aaaaaaaaaaaaaaaattatattcccagccaaattattattcaggaGGGGTGTACAAAATGATTAACATATTTATTTCCTCTGCCACCAAAATCTCACTAAATAACTGTAAATAATTATAGAGCTATAAATCAACAATGAgtcat-atgtttttgt i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76115961 339 - 122973662 gagtccaggagctcaag-ccaggctgggcaacatagtgagacctcatctctac----aaaaaaaaaaaagaaattaggcgtggtggtgtgagcctgtcatcccagctactcaggcggctgaggtgagaggattgt----------------------------------------gccactgcactccagcccaggcaacagagtgagaccatgtctcTCTG--aaaaaaaaaaaaaaaaaaaaaaaaaaaaTTCCCAGCCAAATTATTATTCAGGAGGGGTGTACAAAATGATTACCATATTTATTTCCTCTGCCACCAAAATCTCACTAAATAACTGTAAATAATTATAGAGCTATAAATCAACAATGggtcat-atgtttttgt i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 97554708 335 + 112192347 gagtccaggagttcaag-ccaggcagggcaacatagtgagacctcatctctac--aaaaaaaaaaaaaaagaattaggcgtggtggtgtgagcccgttatcccagctactcaggaggctgaggtgggagtattgt----------------------------------------gccactgcactgcagcctaggcaacagagtgagaccatgtctctctt---------aaaaaaaaaaaaaaaatttgattcccagccaaattattattcaggaGGGGTGTACAAAATGATTACCATATTTATTTCCTCTGCCACCAAAATCTCACTAAATAACTGTAAATAATTATAGAGCTATAAATCAACAATGGGACATAATGTTTTTGT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 98775075 338 + 112612857 gagtccaggagttcaag-ccaggctgggcaacatagtgagacctcatctctacaaaaaaaaaaaaaaaaagaattaggcgtggtggtgtgagcccgttatcccagctactcaggaggctgaggtgggaggattgt----------------------------------------gccactgcactgcagcccaggcaacagagtgagaccatgtctctctt--------aaaaaaaaaaaaaaaaatttgattcccagccaaattattattcaggaggggtgtacaaaatgaTTACCATATTTATTTCCTCTGCCACCAAAATCTCACTAAATAACTGTAAATAATTATAGAGCTATAAATCAACAATGggacataatgtttttgt i macFas5.chr15 C 0 C 0 s papAnu2.chr15 94488377 335 + 107442819 gaggtcagcagatcgagaccatcctggctaacccggtgaaaccccgtctttactaaaaaatacaaaaaactagccgggcgaggtggcgggcacctgtagtcccagctactcgggaggctgaggcaggagaatggcgtaaacccgggtggcggagcttgcagtgaactaagatccagccactgcactccagcctgggcgacatagcgagactccgtcttc------------aaaaaaaaaaaaaaa----------------------------------------aaaaagattaccatATTTATTTCCTCTGCCACCAAAATCTCACTAAATAACTGTAAATAATTATAGAGCTATAAATCAACAATGGGACATAATGTTTTTGT i papAnu2.chr15 I 579 C 0 s chlSab2.chr12 98700309 341 + 108555830 gagtccaggagttcaag-ccaggctgggcaatatagtgagacctcatctct-----aacaaaaaaaaaaagaattaggcgtggtggtgtgagcctgtcatcccagctactcaggaggctcaggtgggaggattgt----------------------------------------gccactgcactccagcccaggcaacagagtgagaccatgtctctactaaaaaaaaaaaaaaaaaaaaaaaaattcgattcccagccaaattattattcagcaggggtgtaCAAAGTGATTACCATATTTATTTCCTCTGCCACCAAAATCTCACTAAATAACTGTAAATAATTATAGAGCTATACATCAACAATGggacataatgtttttgt i chlSab2.chr12 C 0 C 0 s calJac3.chr1 77102916 334 + 210400635 gagcccaggtgttcaag-ccagcctgggcaacatagtgagacctcatctctac----caaaaaaaaaaaaaaattacatgtggttgtatgagcctgtagtcccagctactcaggaagctgaggtgggaggattgc----------------------------------------accactgcattccagcccaggcaacagagtgaaactatgtctc-------aaaaaaaaaaaaaaaaaaaaaattctattcccagccaaattgtcaTTTGAGAGGGGTGTACAAAATGACTACCATGTTTATTTCCTCTGCCACCAAAATCTCACTAAATAACTATAAAGAATTATAGACCTATAAATCTACAATGggtcat-atgtttttgt i calJac3.chr1 C 0 C 0 a score=2111460.000000 s hg38.chr9_GL383542v1_alt 22813 918 + 60032 aagttttgcaaaaataaagatatttgaactgcaacttgtaaagaatattgtttccactctgactccccatcTTATCTGATGCCTCTGGTaatccttttttgtattttacacttaaatatgtaggcagaaccaaggagaactagagaaaaggcttcatcatgaaatacagagaccaaaacaaa-catcataaaagataacttagagacaatgcaagaagcagaagattttgtggaaaaaaaaatctgtgattaaacatttttcaatacagaaaatatcatatccctgaaaa-aaggaacatgttctatttctaaaagaaccagcagaaa-------------aaatatatatagtagaagaaa----tttttaaaaatcagtagaaatagttgaagataaagtaaatcaagacatatcccaaaaacaagattttaaa-aatttttttaaaaattaaagatcaatcttggtggtccaatatacgagtaacaggaattgtagaaaaaacaaagtataaaaaagaaattcaagagaaagtcctgtaacttaaggatacatattggattgaaagacccccaccgaagctctagcacaatgaataaaacattcccctaccaaagggtatccttgtgacatttccaagtcatacacaaatcacctaaaatcaaaatggtatcacattctcaacaagaatattgcacactaaaaaacaagag-gaaataaattcgaatttctgagggaaaattattgttaactcagaattctatatctagccgaattatcaattacacataaggctagaataaagacatttttaggtataaagggccaagagtaatttcgtt---------tcttcctcaagaagctaatagaggacataccaaaacaaagaactaaactaagaaagaggagaaagacacttaagtggccagaaacaggggtttca s panTro4.chr9 86966531 918 + 137840987 aagttttgcaaaaataaagatatttgaactgcaacttgtaaagaatattgtttccactctgactccccatcTTATCTGACGCCTCTGGTaatccttttttgtattttacacttaaatatgtaggcagaaccaaggagaactagagaaaagccttcatcatgaaatacagagaccaaaacaaa-catcataaaagataact-agagacaatgcaagaagcagaagattttgtgggaaaaaaaatctgtgattaaacatttttcaatacagaaaatatcatatccctgaaaa-aaggaacatgttctatttctaaaagaaccagcagaaa-------------aaatatgtatagtagaagaaa----tttttaaaaatcagtagaaatagttgaagataaagtaaatcaagacatatcccaaaaacaagattttaaa-aatttttttaaaaattaaagatcaatcttggtggtccaatatatgagtaacaggaattgtacaaaaaacaaagtataaaaaagaaattcaagagaaagtcctgtaacttaaggatacatattggattgaaagacccccaccaaagctctagcacaatgaataaaacattcccctaccaaagggtatccttgtgacatttccaagtcatacacaaatcacctaaaatcaaaatggtatcacattctcaacaagaatattgcacactaaaaaacaagagagaaataaatttgaatttctgagggaaaattattgttaactcagaattctatatctagccgaattatcaattacacataaggctagaataaagacatttttaggtataaagggccaagagtaatttcgtt---------tcttcctcaagaagctaatagaggacataccaaaacaaagaactaaactaagaaagaggagaaagacacttaagtggccagaaacaggggtttca i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83598060 918 + 135191526 aagttttgcaaaaataaagatatttgaactgcaacttgtaaagaatattgtttccactccgactccccctcTTATCTGATGCCTCTGGTaatccttttttgtattttacacttaaatatgtagggaggaccaaggagaactagagaaaagccttcatcatggaatacagagaccaaaacaaa-catcataaaagagaact-agagacaatgcaagaagcagaagattttgtggaaaaaaaaatctgtgattaaacatttttcaatacagaaaataccatatccctgaaaa-aaggaacatgttctatttctaaaagaaccagcagaaa-------------aaatatatatagtagaagaaa----tttttaaaaatcagtagaaatagttgaagataaagtaaatcaagacatatcccaaaaacaagatttttaa-tatttttttaaaaattaaagatcaatcttggtagtccaatatacgagtaataagaattgtagaaaaaacaaagtataaaaaagaaattcaagaaaaagtcctgtaacttaaggatacatattggatcgaaagacccccactgaagctctagcacaatgaataaaacattcccctaccaaagggtatccttgtgacatttccaagtcatacacaaatcacctaaaatcaaaatggtatcacattctcaacaggaatattgcacactaaaaaacaagagagaaataaattcgaatttctgagggaaaattattgttaactcagaattctatatctagccgaattatcaattacacataaggctagaataaagacatttttaggtataaagggacaagagtaatttcgtt---------tcttcctcaagaagctaatagaggacataccaaaacaaagaactaaactaagaaagaggagaaagacacttaagtggccagaaacagtggtttca i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76116300 916 - 122973662 aagttttgcaaaaataaagatatttgaatggcaacttgtaaagaatattgtctccactcttactaccc-TCTTATCTGACGCCTCTGGTaatccttttttgtattttacacttaaatatgtagggaggaccaaggagaactagagaaaagccttcatcatgaaatacagagaccaaaacaaa-catcataaaagagaact-agagacaatgcaagaagcaggagattttgtgggaaaaaaaatctgtgattaaacatttttcaatacagaaaatatcatatccctgaaaa-aaggaacatgttctatttctaaaagaaccagcagaaa-------------aaataaatatagtagaagaaa----tttttaaaaatcagtagaaatagttgaagataaagtaaattaagacatatcccaaaaacaagattttaaa-aatttttttaaaaattaaagatcaatcttggtggtccaatgtacgagtaataggaattgtagaaaaaacaaagtataaaaaagaaattcaagaaaaagtcctgtaacttaaggatacatattggattgaaagacccccactgacgctctagcacaatgaataagacattcccctaccaaagggtatccttgtggcatttccaagtcatatacaaatcacctaaaatcaaaatggtatcacattctcaacaggaatattgcacact-aaaaacaagagagaaataaatacggatttctgagggaaaattattgttaactcagaattctatatctagccgaattatcaattacacataaggctagaataaagacatttttaggtataaagggccacgagtaatttcatt---------tcttcctcaagaagctaataaaggacatacagaaacaaagaactaaactaagaaagaggagaaagacacttaagtggccagaaacaggggtttca i nomLeu3.chr1a C 0 C 0 s macFas5.chr15 98775413 914 + 112612857 aagttttgcaaaaataaagatatttgaactgcaacttgtaaagaatattgtttccactctgactccccctcTTATCTGACACCTCTGGTaatccttttctgtattttacacttaaatatgtagggaggaccaaggagaactagagaaaagccttcatcatgaaatacagagaccaaaacaaa-catcatgaaagagaact-agagacagtgcaggaagcagaagattttgtgg-gaaaaaaatctgtgattaaacatttttcaatacagaaaatatcgtatccctgaaaacaaggaacatgtactatttctaaaagaactagcagaaa-------------aaatatatataatagaagaaa----tttttaaaaatcagtagaaatagttgaagataaagtaaatcaagacatatcccaaaaacaagatttaaaatttttttttaaaaaattaaagatcaatcttggtggtccaatatacaagtaataggaattatagaaaaaatagagtataaaaaagaaattcaagaaatagtcctgtaacttaaggatacatattggattgaaagacccccactgaagctctagcacaacgaaggaggcattcccctaccaaagagtatccttgtgacatttccacgtcatatacaaatcacctaaaatcaaaacgttatcacattctcaataggaatattgcatactaaaaaacaagagagaaataaatttggatttctgagggaaaattattgttaactcagaattctatatctagccgaattatcaattacacataaggctagaataaagacatttttaggtataaagggccatgggtaatttcatt---------tcttcctcaagaagctaataaaggacataccaaaacaaat-----aactaagaaagtggagaaaggcacttaagtggccagaaacaggggtttca i macFas5.chr15 C 0 C 0 s papAnu2.chr15 94488712 918 + 107442819 AAGTTttgcaaaaataaagatatttgaaCTGCAACTTGTAAAGAATATTGTTTCTACTCTGACTCCCCCTCTTATCTGACACCTCTGGTaatccttttctgtattttacacttaaataTGTAGGGAGGACCAAGGAGAACTAGAGAAAAGCCTTCATCATGAAATACAGAGACCAAAACAAA-CATCATGAAAGAGAACT-AGAGACAGTGCAGGAAGCAGAAgattttgtgg-aaaaaaaatctgtgattaAACATTTTTCAATACAGAAAATATCGTATCCCTGAAAACAAGGACTATGTACTATTTCTAAAAGAACtagcagaaa-------------aaatatatataatagaagaaa----tttttaaaaatcagtagaaatagttgaagataaagtaaatCAAGACATATCCcaaaaacaagatttaaaa-atttttttaaaaaattaaagatcaatCTTGGTGGTCCAATATACAAGTAATAGGAATTATAGAAAAAATagagtataaaaaagaaattcaagaaatagTCCTGTAACTTAAGGATACATATTGGATTGAAAGACCCCCACTGAAGCTCTAGCACAACGAATGAGGCATTCCCCTACCAAAGAGTATCCTTGTGACATTTCCACGTCATATACAAATCACCTAAAATCAAAACGTTATCACATTCTCAATAGGAATATTGCATActaaaaaacaagagagaaataaattcgGATTTCTGAGGGAAAATTATTGTTAACTCAGAATTCTATATCTAGCCGAATTATCAATTACACATAAGGctagaataaagacatttttaggtATAAAGGGCCATGGgtaatttcatt---------tcttcctcaaGAAGCTAATAAAGGACATACCAAAACAAATAACTAAACTAAGAAAGTGGAGAAAGGCACTTAAGTGGCCAGAAACAGGGGTTTCA i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 98700650 915 + 108555830 aagttttgcaaaaataaagata-ttgaactgcaacttgtaaagaatattgtttccacgctgactccccctcTTATCTGACACCTCTGGTaatccttttttgtattttacacttaaatatgtagggaggaccaaggagaactagagaaaagccttcgtcatgaaatacagagaccgaaacaaa-catcatgaaagagaact-agagacagtgcaggaagcagaagattttgtgg-aaaaaaaatctgtgattaaacatttttcaatacagaaaatatcgtatccctgaaaaaaaggaacacgtacaatttctaaaagaactagcagaaa-------------aaatatatataatagaagaaa----tttttaaaaatcagtagaaatagttgaagataaagtaaatcaagacatatcccaaaaacaagattttaa--ttttttaaaaaaaattaaagatcaatcttggtggtccaatatacaagtaataggaattatagaaaaaatagagta-aaaaaagaaattcaagaaatagtcctgtaacttaaggatacatattggattgaaagacccccactgaagctctagcacaacgaataaggcattcccctaccaaagagtatccctgtgacatttccaagtcatatacaaatcacctaaaatcaaaacgttatcacattctcaataggaatattgcatactaaaaaacaagagagaaataaattcagatttctgagggaaaattattgttaactcagaattctacatctaacccaattatcaattacacataaggctagaataaagacatttttaggtataaaaggccatgggtaatttcatt---------tcttcctcaagaagctaataaaggacatatcaaaacaaagaactaaactaagaaagtggagaaagacacttaagtggccagaaacaggggtttca i chlSab2.chr12 C 0 C 0 s calJac3.chr1 77103250 941 + 210400635 aagttttgcaaaaataaagatacttgaacttcaacttgtaaagaatattatttacacttggactccccctcTTATCTGCTgcctccagtaatctctttttgtattttaaacttagatatgtagggaggaccaaggagaactagaggaaagccttcatcatgaaatacagacaccaaaacaaaccatcataaaagagaact-agagacgatgcaagaagcagaagatttggttg-gaaaaaaatatctgattaaacattttttgagacagaaaatattatatccctgaataaaaggaacatgttccatttctaaaagaaccagcagaaatatatatatatatatatatatatattagaaaaaaaattttttt---aatcagtagaaatagctgaagataaagtaagtcaagacatgtcccaaaaacaagattttaaa-aa-ttaaaaaaaaattaaagatcaatctaggtggtctagtatacgagtaataggaattttagaaagaacagagcataaaaaagaaattcaagaaaaagtcctgtaacttaaggatacatataggattgaaagatccccactgaagctctagcataatgaataagacattcccctaccaaaggatatccttgtgacatttccgagtcatacacaaaacaccaaaaatcaaaatgccatcacattctcaacagcaatattgcacactaaaaaacaagagagaaataagttcagatttctaagggaaaattattgttaactcagaattctatatctagccgaattattaattatacataaggctagaataaagagatttttaggtataaagggccacaggtaatttcctttctatttggtcttcctcaagaagctaataaagggcataccaaaacaaagaactaaactaagaaagaggacaaagacatttaagtggccagaaacaggggtttca i calJac3.chr1 C 0 C 0 e rheMac3.chr15 97555043 0 + 112192347 C a score=1888115.000000 s hg38.chr9_GL383542v1_alt 23731 658 + 60032 acacagaacagtgaagaaaatctc--------------------aagTGACAGATACGGCAAGAAAATAAAGGAATTCAAGTTGTAAAACAAACCAAAAATTGAAATGTTT-----ACATGTTTAACTATAGTTAAATTGTTAACTATAGGTATCATAATAAAATGTTCACCTATGGGAAAACAGTATTAAGAGG--------------TCTCAATATATGGGATTATTTGAGAAAAAA-TATATCTATACATTCAT-----AAAAAATTCTGTAAATAATAGAAACACAAATACTAGCTCTGGGCCCAACAATTTAACAaataatggttaataatcacagtcatgactgggagtggtggctcacacctgtaatccaaacactttgggaggccaaggtgggtggatcatttgaggtcaggagctcgagaccagcttagccaacatggtgaaaccctgtctctactaaaaatacaaaaattagccgggtatgctggtgcatgcctgtagtgcgagctactcaggaggctgaggcaggagaattgcttgaacccaggagatggaggttgcagtgagccaagattgcaccactgcactctagcctgagctacagagcaagact--ctgtctcaaaataataataata---------------ataattatcacagtcataatTTGTATCTGCATTGAATGACAGCTACACAAACATAAAGAAA s panTro4.chr9 86967449 659 + 137840987 acacagaacagtgaagaaaatctc--------------------aagTGACAGATACGGCAAGAAAATAAAGGAATTCAAGTTGTAAAACAAACCAAAAATTGAAATGTTT-----ACATGTTTAACTATAGTTAAATTGTTAACTATAGGTATCATAATAAAATGTTCACCTATGGGAAAACAGTATTAAGAGG--------------TCTCAATATATGGGATTATTTGAGAAAAAAATATATCTATACATTCAT-----AAAAAATTCTGTAAATAATAGAAACACAAATACTAGCTCTGGGCCCAACAATTTAACAAATAATGGTTAATAATCACAGTCATgactgggagtggtggctcacacctgtaatccaaacactttgggaggccgaggtggctggatcatttgaggtcaggagctcgagaccagcttagccaacatggtgaaaccctgtctctactaaaaatacaaaaattagccgggtatgctggtgcatgcctgtagtgccagctactcaggaggctgaggcaggagaattgcttgaacccaggagatggaggttgcagtgagccaagattgcaccactgcactctagcctgagctacagagcacgact--ctgtctcaaaataataataata---------------ataataatCACAGTCATAATTTGTATCTGCATTGAATGACAGCTACACAAACATAAAGAAA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83598978 659 + 135191526 acacagaacagtgaagaaaatctc--------------------aagTGACAGATACGGCAAGAAAATAAAGGAATTCAAGTTGTAAAACAAACCACAAATTGAAATGTTT-----ACATGTTTAACTATAGTTAAATTGTTAACTATAGGTATCATAATAAAATGTTCACCTATGGGAAAATAGTATTAAGAGG--------------TCACAATACATGGGATTATTTGAGAAAAAAATATATCTATACATTCAT-----TAAAAATTCTGTAAATAAAAGAAACACAAATACTAGCTCTGGGCCCAGCAATTTAACAAATAATGGTTAATAATCACAGTCATgactgggagtggtggctcacgcctgtaatccaaacactttgggaggccgaggtcggtggatcatttgaggtcaggagtttgagaccagcttagccaacatggtgaaaccctgtctctactaaaaatacaaaaattagacgggtatgctggtgtgtgcctgtagtgccagctactcaggaggctgaggcaggagaattgcttgaacccaggagatggagtttgcagtgagccgagattgcaccactgcactctagcctgagctacagagcaagact--ctgtctcaaaaTAATCATCATC---------------ATCATCATCACAGTCATAATTTGTATCTGCATTGAATGACAGCTACACAGACATAAAGAAA i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76117216 665 - 122973662 acacagaacagtgaagcaaatctc--------------------aagTGACAGATACGGCAAGAAAATAAAGGAATTCAAGTTGTCAAACAAACCAAAAATTGAAATGTTTACTCCACATGTTTAACTATAGTTAAATTGTTAACTATAGGTATCATAATAAAACATTTACCTATGGGAAAATCGTATTAAGAGG--------------TCTCAATATGTGGGATTATTTGAGAAAAAA--ACATGTATACATTCAT-----AAAAAATTCTGTAAATAACAGAAACACAAATACTAGCTCTGAGCCCAACAATTTAACAaataatggttaataatcatagtcatgactgggcctggtggcccacgcctgtaatccaaacactttgggaggccaaggtgggtggatcattggaggtcaggagttaccgaccagcttagctaacatggtgaaaccctatctctactaaaaatacaaaaattagccaggtatggtggtgtgtgcccgtagtgccagctactcaggaggctaaggatggagaattgcttgaacccaggagatggaggttgcagtgagctgagattgcaccactgcactccagcctaggctacagagcaagact--ctgtctcaaaataataataata------------atcatcatCatcacagtcataatttggctctgcattgaatgacagctacacaaacataaaaaaa i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 97555043 692 + 112192347 ACATAGAACAGTGAAAAAAATCTC--------------------AAGTGACAGATACAGCAAGAAAATAAAGCAATTCAAGATGTGAAGCAAACCAAAAATTGAAATGTTTACTATACATGTTTGACTATAGTTAAATTGTTAACTGTAGGTATCATCATAAAATGTTTACCTATGGGAAAATAGTATTAAGAGGTTTATATGGGATTATCTCAATATATGGGATTATTTGAGAAAAAA-TATATCTATACATTCAT-----AAAAAATTCTGTAAATAATAGAAACACAAATACTAGCTCTGCGCCCAACAATTTAACAAATAATGGTTAATAATCACAGTCATgactgggcgtgacagctcacgcctgtaatccaaacactttgggaggccgaggtgggtggatcatttgaggtcaggagttcgagaccagcttagctaacactgtgaaaccccttctctactaaaaatacaaaaattagcctggtatggcggtgcatgcctatggtgatagctactcaggaggctgaggcaggaaaactgcatgaacccgggagatggaggttgcagtgagctgagattgcaccactgcactccagtctgggctacagagcaagact--ctgtctcaGaataataataataatgatgataataataataataatCACAGTCATAATTTGGCTCTGCATTGAATGACAGCTACACAAACATAAAGAAA i rheMac3.chr15 C 0 C 0 s macFas5.chr15 98776327 692 + 112612857 acatagaacagtgaaaaaaatctc--------------------aagTGACAGATACAGCAAGAAAATAAAGCAATTCAAGATGTGAAGCAAACCAAAAATTGAAATGTTTACTATACATGTTTAACTATAGTTAAATTGTTAACTGTAGGTATCATCATAAAATGTTTACCTATGGGAAAATAGTATTAAGAGGTTTATATGGGATTATCTCAATATATGGGATTATTTGAGAAAAAA-TATATCTATACATTCAT-----AAAAAATTCTGTAAATAATAGAAACACAAATACTAGCTCTGCGCCCAACAATTTAACAaataatggttaataatcacagtcatgactgggcgtggcagctcacgcctgtaatccaaacactttgggaggccgaggtgggtggatcatttgaggtcaggagttcgagaccagcttagctaacacagtgaaaccccttctctactaaaaatacaaaaattagcctggtatggtggtgcatgcctatggtgctagctactcaggaggctgaggcaggagaactgcttgaacccaggagatggaggttgcagtgagctgagattgcaccactgcactccagtctgggctacagagcaagact--ctgtctcaaaataataataataatgatgatgataataataataatcacagtcataatTTGGCTCTGCATTGAATGACAGCTACACAAACATAAAGAAA i macFas5.chr15 C 0 C 0 s papAnu2.chr15 94489630 692 + 107442819 ACATAGAACagtgaaaaaaatctc--------------------aagtGACAGATACAGCAAGAAAATGAAGCAATTCAAGATGTGAAGCAAACCAAAAATTGAAATGTTTACTATACATGTTTAACTATAGTTAAATTGTTAACTGTAGGTATCATCATAAAATGTTTACCTATGGgaaaatagtattaagaggtTTATATGGGATTATCTCAATATATGGgattatttgagaaaaaa-tatatctatacatTCAT-----AAAAAATTCTGTAAATAATAGAAACACAAATACTAGCTCTGCGCCCAACAATTTAACAAATAATGGTTAATAATCACAGTCATGactgggcgtggcagctcacgcctgtaatccaaacactttgggaggccgaggtgggtggatcatttgaggtcaggagttcgagaccagcttagctaacacggtgaaaccccttctctactaaaaatacaaaaattagcctggtatggtggtgcatgcctgtggtgctagctactcaggaggctgaggcaggagaactgcttgaacccgggagatggaggttgcagtgagctgagattgcaccactgcactccagtctgggctacagagcaagact--ctgtctcaaaataataataataataatgatgataataataataatcacagtCATAATTTGGCTCTGCATTGAATGACAGCTACACaaacataaagaaa i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 98701565 697 + 108555830 gcacagaacagtgaagaaaatCTCACTGTTAAATCTCACTATATAAGTGACAGATACAGCAAGAAAATAAAAGAATTCAAGATGTAAAGCAAACCAAAAATTGAAATGTTGACTATACATGTTTAACTATAGTTAAATTGTTAACTGTAGGTATCATAATAAAATGTTTACCTATGGGAAAATAGTATTAAGAAG--------------TCTCAATATATGGGATTATTTGAGAAAAAA-TACATCTATACATTCAT------AAAAATTCCATAAATAATAGAAACACAAATACTAGCTCTGCGCCCAACAATTTAACAAATAATGATTAATAATCACAGTCATgactgggcgtgggggctcacacctgtaatccaaacactttgggaggctgaggtgggtggatcatttgaggtcaggagtacgagaccagcttagctaacatggtgaaaccccatctctactaaaaatacaaaaattagcctggtatggtagtgcgtgcctgtagtgccagctactcaggaggctgagacaggagaactgcttgaacccaggagatggaggttgcagtgagccaagattgcaccactgcactccagtctgggctacagagcaagact--gtgtctcaaaaTAatcatcaccatcatcatcatcatcatcatcatcaCAGTCATAATTTGGCTCTGCATTGAATGACAGCTACACAAACATAAAGAAA i chlSab2.chr12 C 0 C 0 s calJac3.chr1 77104191 660 + 210400635 acccagaacggtgaagaaaatctc--------------------aagaGGCAGATATGGCAAGAAAATGAAGCAATTCAAGATGTAAAACAAACCAAAAATTGAAGTGTTTACGATACATGTTTAACTATAGTTAAATTGTTAACCGTAGGTATCAAAATAAAATGTTTACCTATGAGAATGTTTACCAAAGAGG--------------TCTCAATATATGGGATTATTTGAGAAAAAA-TATATCCATACATTCATTAAAAAAAAAACTCTGTAAATAATAGAAACACAAATACTAACTCTAGGCCCAATAATTTAACA---AATGGTTAATAATCACAGTCACggccgggcaccatggctcccgcctgtaatcccagcactttgggaggccaagttgggtggatcatttgaagttaggagttagagaccagcctagctaacatggtgaaaccctatctctactaaaaatacaaaaattagcttggtgtggtggtgcgtgcctgt------agctactcaggaggctgaggcaggagaactgcttggacccgggagatggaggttgtggtgagctgagattgcaccactgcactccaacctgggcaacagaacaagactcactgtctca-aaTAATGCTAATA---------------CTAAAAATCACAGTCATCATTTGGCTCTGCATTGGGTGACAGCTATACAAATATTAAGAAA i calJac3.chr1 C 0 C 0 a score=716926.000000 s hg38.chr9_GL383542v1_alt 24389 320 + 60032 TGTAAATAGGggccaggcacagtggctcacgcctgtaatctcagcactttgggaggccgaggcgggtggatca--tgaggtcaggagatcgagaccatgctggctaacatggtgaaacccagtctctactaaaaatacaaaaaattagccgggcgtgctggcgggcgcctgtagtcccagctactcaggaggctgaggcaggagaatggcgtgaatccgggaggtggagcttgcagtaagccgagacggcgccactgcactccagcctgggtgacagagcgagactccatctc------aaaaaaaaaaaaaaaaaaaaaaaaagaaC s panTro4.chr9 86968108 309 + 137840987 TGTAAATAGGggccaggcacagtggcttacgcctgtaatctcagcactttgggaggccgaggcgggtggatca--tgaggtcaggagatcgagaccatgctggctaacatggtgaaaccccgtctctactaaaaatacaaaaaattagccgggcgtgctggcgggcgcctgtagtcccagctactcaggaggctgaggcaggagaatggcgtgaatccaggaggtggagcttgcagtaagccgagacggcgccactgcactccagcctgggtgacagagcgagactccatctc------aaaaaaaaaaaaaagaaa----------- i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83599637 307 + 135191526 TGTAAATAGGggccaggcacagtggctcacgcctgtaatcccagcactttgggaggccgaggcgggtggatca--taaggtcaggagaccaagaccatgctggctaacatggtgaaaccccgtctctactaaaaatacaaaaaattagccaggtgtgttggcgggcgcctgtagtcccagctactcaggaggctgaggcaggagaatggcgtgaatcccagaggtggagcttgcagtaagccaagatggcgccactgcactccagcctgggtgacagagcgagactccatctc------aaaaaaaaaaaagaaa------------- i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76117881 316 - 122973662 tgtaaataggggccaggcacagtggctcacacctgtaatcccagaactttgggaggccgaggcgggtggatcacttgaggtcaggagatcaagaccatcctggctaacacggcgaaaccccgtctccactaaaaatacaaaaaattagccgggtgtgttggtgggcacctgtagacccagctactcgggaggctgaggcaggagaatggtgtgaacccaggaggcgaagcttgcagtaagctgagatcgcgccactgcactccagcctgggtgacagagcgagactccatctc------aaaaaaaaaaaaaaaaaaagaaa------ i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 97555735 309 + 112192347 TGTAAATAGGggtcggggacggtggcccaggcctgtaatcccagcactttgggaggccaaggcgggcagatca--cgaggtcaggagatcaagaccatcctggctaacacggtgaaaccccgtctctactaaaaatacaaaaaattagccgggcgcggtggcgggcacctgtagtcccagctactcaggaggctgaggcaggagaatggcgtgaacccaggaggcggagcttgcagtgagccgagatcacgccactgcactccagcctgggtgacagagtgagactccgtctc------aaaaaaaaaaaaaagaaa----------- i rheMac3.chr15 C 0 C 0 s macFas5.chr15 98777019 309 + 112612857 TGTAAATAGGggtcggggacggtggcccaggcctgtaatcccagcactttgggaggccaaggcgggcagatca--cgaggtcaggagatcaagaccatcctggctaacacggtgaaaccccgtctctactaaaaatacaaaaaattagccgggcgcggtggcgggcacctgtagtcccagctactcaggaggctgaggcaggagaatggcgtgaacccaggaggcggagcttgcagtgagccgagatcacgccactgcactccagcctgggtgacagagtgagactccgtctc------aaaaaaaaagaaaaGGAA----------- i macFas5.chr15 C 0 C 0 s papAnu2.chr15 94490322 315 + 107442819 tgtaaataggggtcgggcacggtggcccaggcctgtaatcccagcactttgggaggccaaggcgggcagatca--cgaggtcaggagatcaagaccatcctggctaacacggtgaaaccccgtctctactaaaaatacaaaaaattagccgggcgcggtggcgggcacctgtagtcccagctactcaggaggctgaggcaggagaatggcgtgaacccaggaggcgaagcttgcagtgagccgagatcacaccactgcactccagcctgggtgacagagtgagactccgtctcaaaaaaaaaaaaaaaaaaaagaaa----------- i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 98702262 309 + 108555830 TGTAAATAGGggccgggcac-gtggcccaggcctgtaatcccagcactttgggaggccaaggcaggtggatca--tgaggtcaggagatcgagaccatcctggctaacacggtgaaaccctgtctctacttaaaatacaaaaaattagccaggcatgttggcgggcgcctgtagtcccagctactcaggaggctgaggcaggagaatggcgtgaacccaggaggcggagcttgcagtgagccgagatcctgccactgcactccagcctgggtgacagagcgagactccgtctc-----aaaaaaaaaaaaaaagaaa----------- i chlSab2.chr12 C 0 C 0 e calJac3.chr1 77104851 0 + 210400635 C a score=6569664.000000 s hg38.chr9_GL383542v1_alt 24709 2229 + 60032 TGTAAATAGGAAGTATCAATTTAACCAAACATGTGGTATGACCATATTAGGCAAGGACATCTTTGATACAACTATATTacacaaaagagtatatataatataatttcatttataaaagtctagaaaatacaaactaatctacagtgacagaaagcagatcattcgttgcctgagggaggtgatatcgtggtggagtgaaggattccaaatgggcacaggtgatctttagagcatgataaatatgctcatttttctttatgttcatgatggcttcacaggtgtatatgcatgccaaaacttttcaaactgtacactttaaatatgctcactttattgtatgtcaattttatctcaataaaattataaacaaAAttttttagatagggtctcactctgttggccaggctagagtgcaatggtgtgatcatagctcactgcagcctcaaactgctgggctcaagcaatcctcccacctcagcctcccaagtagctaggatcatgagtgcttgtcaccacacccagcTAACTTAAATGAAACATTTTTTAACACAATAAAAAAACATATTGttaaaatgactaacttaaaaaaaaatctaacaataccaaatgccagtgaggacacagaacaactagaattctcatgcactgctggttagactgcaaaataatatagccactctgaaaaaccacttggccgtttttataaagttaaacctggagttctcacacgacccatcaatcctagtccttggtcattacccaaaagaaatgaaaatgtctgatca--cacaaaaact-ttacataaatgttcataggagctttagttataaccatcaagacctggaaacaacccaattatccttcaacaggtgaataaactatgatatatccataagatgaaatactactcagaaataaatgagaacaaagtattcatacacataaaaacacagatgaattcctaatcttgcagagagaaagaagcagacctcaagaggttacatactgtatgatt--------------------------------tgtgtgtgtgggtgatgttctaaaaaaggcaaaaccgcaaggaatggggaagagatc--------------------------------agtgcttgcc--aggggtcaggcgtttgattttaaaggggtaacattcaagagtttactttttatacgatggagctctcttgcatcctaattgtggtggtggttataaaaatctatacaggtgttaaaacttacagaactatagaccccaaaaaaggtcaatAGATAAATTTTAA----AATTAATTTTTAAAAATCGATGCATCTTGAGTATGTGTAGCAATAAAAGGACAATACTGGATGATGCAACTTAACATGAGTAATTGATGGTCTCTTCCCTAATGACCTGGAAGTCACAGACCGACCTGATGGCCAATCAACATTCAGCGTGTAGGCCTTGACTAGAGAGTGAGGGAGAGTTTTCTGAACACTGTATTTCCTTAAAAATTTACCAGTAAGTACATGCTACAGATAGAACTGTTTCTTACGTCTT---CTAAAGCTCTCAGGTAGTAAAAGTGGCAATGTGAGGTGAAATTTTTTATTAAA----------------------------AGTTACTATTAAATAATAACAACG-AATGATATTTCAAGCAACTTCCTTAAAGTGATTTTATCACAGGTTTCAATGGACTAAAATGGCAATAAATTTAAGCATATT-AAAGCTACGTAAACATCTTTAAACCTGAAAGCTGAGGATCTGAAGAATTTGAAAGGCATAATTTCGTGCTTTAAATTTCATATAAGGAAAGAACGAATTTGCACATTCTAGGATAAGCTGTAACAGTGCATATTAGCGCAGTTCATGGCATTATGGCTACAGCTTAAATGTGGAAAGAGTTAAGAAAATCTTGTTAAACTGACACAGACTTTTACAACACGATGTGTTTTGTCTGT--TTTTTGCCAGCAAAGGCCAACTCAAGGACACTCCTCACCCAGCACTCACGACCCAGACAAGGGTAGAGCCAAGGGCCTCTGCAAGTAGGTGTCAGCGCTAGCTTTTCTTCTTGTCTTCACAGCCTGGGATGGGGCCGGTGAGGAGTCAAAGCACCCAGCGCTGTAACTGAATATTTAATCACCCGCTCCTTCCTGGTTGATGATTAGCATTTATTACGCAAAAACACTGAAACTGCTGTGCCTGTCCGGTTTAGAAAATGAAATCTATTCCTTTTCCAGAGACAGTTTGCTCCGGCCACTATGAGACGTCCAACACGGCACAACTCCTGACTCAACTCC s panTro4.chr9 86968417 2218 + 137840987 TGTAAATAGGAAGTATCAATTTAACCAAACATGTGGTATGACCATATTAGGCAAGGACATCTTTGATACAACTATATTacacaaaagagtatatatcatataatttcatttataaaagtctagaaaatacaaactaatctacagtgacagaaagcagatcattcgttgcctgaggaaggtgatatcgtggtggagtgaaggattccaaatgggcacaggcgacctttagagcatgataaatatgctcatttttctttatgttcatgatggcttcacaggtgtatatgcatgccaaaactttccaaactgtacactttaaatatgctcactttattgtatgtcaattttatctcaataaaattataaacaaAAttttttagatagggtctcactctgttggccaggctagagtgcaatggtgtgatcatagctcactgcagcctcaaactgctgggctcaagcaatcctcccacctcagcctaccaagtagctaggatcatgagtgcttgtcaccacacccagcTAATTTAAATGAAACATTTTTTAACACAATAAAAAA-CATATTGttaaaatgactaacttaaaaaaaaaactaacaataccaaatgccagtgaggacacagaacaactagaattctcatgcactgctggttagactgcaaaataatatagccactctgaaaaaccacttggccatttttataaagttaaacctggagttctcacacgacccatcaatcctagtccttggtcattacccaaaagaaatgaaaatgtctgatca--cacaaaaact-ttacataaatggtcataggagctttagttataaccatcaagacctggaaacaacccaattatccttcaacaggtgaataaactatgatatatccataagatgaaatactactcagaaataaatgagaacaaagtattcatacacataaaaacacagatgaattcctaatcttgcagagagagagaagcagacctcaagatgttacatactgtatgatt--------------------------------tgtgtgtgtgggtgatgttctaaaaaaggcaaaaccacaaggaatggggaagagata--------------------------------agtgcttgccccaggggtcaggggtttgattttaaaggggtaacattcaagagtttactttttatacgatggagctctcttgcatcctaattgtggtggtggttataaaaatctatacaggtgttaaaacttacagaactatagaccccaaaaaaggtcaatAGataaattttaa----aattaatttttaaaaatCGATGCATCTTGAGTATGTGTAGCCATAAAAGGACAATATTGGATGATG------------AGTAATTGATGGTCTCTTCCCTAATGACCTGGAAGTCACAGACCGACCTGATGGCCAATCAATATTCAGCGTGTAGGCCTTGACTAGAGAGTGAGGGAGAGTTTTCTGAACACTGTATTTCCTTAAAAATTTACCAGTAAGTACATGCTACAGATAGAACTATTTCTTACGTCTT---CTAAAGCTCTCAGGTAGTAGAAGTGGCAATGTGAAGTGAAATTTTTTATTAAA----------------------------AGTTACTATTAAATAATAACAACG-AATGATATTTCCAGCAACTTCCTTAAAGTGATTTTATCACAGGTTTCAATGGACTAAAATGGCAATAAATTTAAGCATATT-AAAGCTATGTAAACATCTTTAAACCTGAAAGCTGAGGATCTGAAGAATTTGAAAGGTATAATTTCGTGCTTTAAATTTCATATAAGGAAAGAACGAATTTGCACATTCTAGGATAAGCTGTAACAGTGCATATTAGCGCAGTTCATGGCATTATGGCTACAGCTTAAATGTGGAAAGAGTTAAGAAAATTTTGTTAAACTGACACAGACTTTTACAACACGATGTGTTTTGTCTGT--TTTTTGCCAGCAAAGGCCAACTCAAGGACAATTCTCACCCAGCACTCATGACCCAGACAAGGGTAGAGCCAAGGGCCTCTGCAAGTAGGTGTCAGCGCTAGCTTTTCTTCTTGTCTTCACACCCTGGGGTGGGGACGGTGAGGAGTCAAAGCACCCAGCGCTGTAACTGAATATTTAATCACCCGCTCCTTCCTGGTTGATGATTAGCATTTATTACGCAAAAACACTGAAACTGCTGTGTCTGTCCGGTTTAGAAAATGAAATCTATTCCTTTTCCAGAGACAGTTTGCTCTGGCCACTATGAGACGTCCAACACGGCACAACTCCTGACTCAACTCC i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83599944 2227 + 135191526 TGTAAATAGGAAGTATCAATTTAACCAAACATGTGGTATGACCATATTAGGCAAAGACATCTTTGATACAACTATATTacacaaaagagtatataccatataatttcatttataaaagtctagaaaatacaaactaatctacagtgacagaaagcagatcatttgttgcctgaggaaggtgata---tggtggagtgaaggattccaaatgggcacaggcaacctttagagcatgataaatatgctcatttttctttctgttcatgatggcttcacaggtgtatatgcatgccaaaacttttcaaactgtatactttaaatatgctcactttattgtatgtcaattttatctcaataaaattataaacaaAAttttttagctagggtctcactctgttggcgaggctagagtgcagtggtgtgatcatagctcattgcagcctcaaactgctgggctcaagcaatcctcccacctcagcctcccaagtagctaggatcatgagtgcttgtcaccacacccagctaatttAAATGAAACATTTTTTAACACAATAAAAAA-CATATTGttaaaatgactaacttaaaaaaaaatctaacaataccaaatgccagtaaggatacagaacaactagaattctcatgcactgctggttatactgcaaaataatatagccactctgaaaaaccacttggccgtttttataaacttaaacctagagttctcatacgacctatcaatcctagtccttggtcattacccaaaagaaatgaaaatgtctgctca--cacaaaagct-ttacataaatggtcataggagctttagttataaccatcaagaactggaaacaacccaattatccttcaacaggtgaataaac--tgatatatccataagatgaaatactactcagaaataaatgagaacaaagtattcatacacgtaacaacacagatgaattcctaatcttgcagaaagaaagaagcagacctcaagaggttacatactgtatgatt--------------------------------tgtgtgtgtgtgtgatgttctaaaaaaggcaaaaccacaaggaatggggaagagatc--------------------------------agtgcttgcc--aggggtcaggggtttgattttaaaggggtaacatacaagagtttactttttatacaatggagctctcttgcatcctaattgcggtggtggttataaaaatctatacaggtgttaaaacttacagaactatagaccccaaaaaaggtcaatAGataaattttaaaattaattaatttttaaaaatCGATGCATCTTGAGTATGTGTAGCAATAAAAGGACAATATTGGATGATGCAACTTAACATCAGTAATTGATGGTCTCTTCCCTAATGACCTGGAAGTCACAGACCAACCTGATGGCCAATCAATATTCAGTGCGTAGGCCTTGACTAGAGAGTGAGGGAGAGTTTTCTGAACACTGTATTTCCTTAAAAATTTACCATTAAGTACATGCTACAGATAGAACTATTTCTTACGTCTT---CTAAAGCTCTCAGGTAGTAGAAGTGGCAATGTGAAGTGAAATTTTTTATTAAA----------------------------AGTTACTATTAAATAATAACAAGG-AAGGATATTTCCAGCAACTTCCTTAAAGTGATTTTATCACAGGTTTCAATGGACTAAAATGGCAATAAATTTAAGCATATT-AAAGCTATGTAAACATCCTTAAACCAGAGAGCTGAGGATCTGAAGAATTTGAAAGGCATAATTTTGTGCTTTAAATTTCATATAAGGAAAGAACAAATTTGCATATTCTAGGATAAGCTGTAACAGTGCATATTAGTGCAGTTCATGGCATTATGGCTACAGCTTACATGTGGAAAGAGTTAATAAAATTTTGTTAAACTGACACAGACTTTTACAAGACGATGTGTTCTGTCTGT--TTTTTGCCAGCAAAGGCCAACTCAAGGGCACTTCTCACCCAGCACTCACGACCCGGACAAGGGTAGAGCCAAGGGCCTCTGCAAGTAGGTGTCAGCGCTAGCTTTTCTTCTTGTCTTCACACCCTGGGATGGGGCCGGTGAAGAGTCAAAGCACCCAGTGCTGTAACCGAATATTTAATCACCCGCTCCTTCCTGGTTGATGATTAGCATTTATTATGCAAAAACACTGAAACTGCTGTGTCTGTCCGGTTTAGAAAATGAAATCTATTCCTTTTCCAGAGACAGTTTGCTCTGGCCACTATGAGACGTCCAACACGGCACAACTCCTGACTCAACTCC i ponAbe2.chr9 C 0 M 434 s nomLeu3.chr1a 76118197 2210 - 122973662 tgtaaataggaagtatcaatttaaccaaacatgtgctatgactatattaggcaaggaCATCTTTGATACAACTATATTacacaaaaaagtatatatcatataatttcatttataaaagtctagaaaatacaaactaatctacagtgacagaaagcagatcatttgttgcctgaggaaggtgatatcgtg-----gtgaaggattccaaatgggcacaggcaacctttagagtatgataagtatgctcatttttctttatgttcatgatggcttcacaggtatatatgcatgccaaaacttttcaaactgtacactttaaatatgctcactttattgtatgtaagttttatctcaacaaaaTTATAAACAAAAttttttagatagggtttcactctgttggccaggctagagtgcagtggtgtgatcataactcactgcagcctcaaactcctgggctcaagcaatcctcccacctcagcctcccaaataactaggatcatgagtgcttgtcaccacacccagcTAATTTAAATGAAACATTTTTTAACACAATAAAAAA-CATATTGttaaaatgactaactt-aaaaaaaatctaacaataccaaatgccagtgaggatacagaacaactagaattctcatgcactgctggttagactgcaaaataatatagccactctgaaaaaacactttgccgtttttataaagttaaacctggagttctcatacgacccatcaatcctagtcctt-gtcattacccaaaagaaatgaaaacgtctgatcg--cacaaaaact-ttatataaatagtcataggagctttagtcacaaccatcaagaactggaaacaacccaattatccttcaacaggtgaataaactatgatatatccataagatgaaatactactcagaaataaatgagaataaagcattcatacacataacaacacatttgaattcctaatcttgcagagagaaagaagcagacctcaagaggttacatactgtatgatt--------------------------------tgtgtgtgtgtgtgatgttctaaaaaaggcaaaaccacaaggaatggggaagagatc--------------------------------agtgcttgcc--aggggtcaggggtttgaatttaaaggggtaacatacaagagtttactttttatacaatggagctctcttgcatcctaattatggtggtggttataaaaatctatacaggtgttaaaacttacagaactatagaccccaaaaaaggtcaat-----AATTTTAAAATTAATTAATTTAAAAAAATCGATGCATCTTGAGTATGTGCAGCAATAAAAGGACAATATTGGATGATGCAACTTAACATCAGCAATTGATGGTCTCTTCCCTAATGACCTGGAAGTCATAGACCAACCTGATAGCCAATCAATATTCAGTGTGTAGGCCTTGACTAGAGAGTGAGGGAGAGTTTTCTGAACACTGTATTCCCTTAAAAATTTACCATTAAGTACATGCTACAGATAGAACTATTTCTTACGTCTT---CTAAAGCTCTCAGGTAGTAGAAGTGGCAATGTGAGGTGAAATTTTTTATTAAA----------------------------AGTTACTATTAAATAATAACAAGG-AATGATATTTCCAGCAACTTCCTTAAAGTGATTTTATCAC-GGTTTCAATGGACTAAAATGACAATAAATTTAAGCATATT-AAAGCTATGTAAACATCCTTAAACCTGAAAGCTGAGGATCTGAAGAATTTGAAAGACATAATTTTGTGCTTTAAATTTCATAT-----AAGAACGAATTTGCATATTCTAGGATAAGCTGTAACAGTGCGTATTAGTGCAGTTCATGGCATTATGGCTACAGCTTAAATGTG----GAGTTAATAAAATTTTGTTAAACTGACACAGACTTTTACAAGATGATGTGTTTTGTCTGT--TTTTTGCCAGCAAAGGCCAACTCAAGGGCACTTCTCACCCAGCACTCGCGACCCAGACAAGGGTAGAGCCAAGGGCCTCTGCAAGTAGGTGTCAGCGCCAGCTTTTCTTCTTGTCTTCACACCCTGGGATGGGGCTGGTGAGGAGTCAAAGCACCCAGTGCTGTAACTGAATATTTAATCACCCACTCCTTCCTGGTTGGTGATTAGCATTTATTATGCAAAAATACTGAAACTGCTGTGTCTGTCTGGTTTAGAAAATGAAATCTATTCCTTTTCCAGAGACAGTTTGCTCCGGCCACTATGAGATGTCCAACATGGCACAGCTCCTGACTTAACTCC i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 97556044 2244 + 112192347 GGTAAATAGGAAGTATCAATTTAACCAAACATGTGGTATGACCATATTAGGCAAGGACATCTTTGATACAACTATATTacac--aagagtatatatcatataatttcatttataaaagtctagataatacaaactaatctacagtgacagaaagcagatcatttgttgcctgaggaaggtgatatcatggtggcatgaaggattccaaatgggcacaggcaacctttacagcatgataaatatgctcatttttctttacgttcatgatggcttcacaggtgtttatgcataccaaaacttttcaaactctatactttaaatatgctcactttattgtatgtcaattttatctcaataaaattaaAAACAAAAttttttagatagggtctcaccctgttggccaggctagagtgcagtggtgtgatcatagctcactgcagcctcaaactcctgggctcaagcaatcctcccacctcagcctctgaagtaggtaggatcacaagtgcttgtcaccacacccagcTAATTTAAATGAAACATTTTTTAACACAATAAAAAA-CATATTGttaaaatgactaactt-taaaaaaaactaacaataccaaatgccagtgaggatacagaacaactagaattctcatgcactgctggttagactgcaaaataatacagccactctgaaaaaccgcttggccgtttttataaagttaaacctggagttctc---------atcaatcctagtccttggtcattacccaaaagaaatgaaaatgtctgatcacgcacaaaaactgttacataaatggtcataggagctttagttataaccatcaagaactggaaacaacccaattatccttcaacaggtgaataaactatgatacatccatcagatgaaatactactcagaaataaatgagaacaaagtattcatacacataacaacacagacaaattcctactcttgcagagagaaagaagcagacctcaagaggttacattctgtatgatt--------------------------------tgtgtgtgtttgtgatggtctaaaaaaggcaaaaccacaaggactggggaagagatt--------------------------------agtgcttgcc---------aggggtttgattttaaaggggtaacatacaagagtttactttttatacaatggagctctcttgcagcctaattgtagtggtggttataaaaacctatacaggtgttaaaacttacagaactatagaccccaagaaaggtcaatAGATACattttaaaattaattaattttaaaaaatCGATGCATCCTGAGTATGTGTAGCAATAAAAGGACAATATTGGATGATGCAACTTAACATCAGTAATTGATGGTCTCTTCCCTAATGACCTGGAAGTCATAGACCAACCTGATGGCCAATCAATTTTCTATGTATAGGCTTTGACTAGAGAGTGACGGAGAGTTTTCTGAACACTGTCTTTCCTTAAAAATGTACCATTAAGTACATGCTACAGATAGAACTATTTCTTATGTATT---CTAAAGCTCTCAGGTAGTAGAAGTGGAAATGTGAGGTGAAATTTTTTATTAAAAGttctaaattttatgaggcctagtttcaGTTACTATTAAATAATAACAAGG-AATTATATTTCCAGCAACTTCCTTAAAGTGATTTTATCACAGGTTTCAGTGGTCTAAAATGGCAATACATTTAAGCATATTAAAAGCCATGTAAACATCCTTAAACCTGAAAGCTGAGGATCTGAAAAATTTGAAAGGCATAATTTTGTGCTTTAAATTTCATATAAGCAAAGAACTAATTTGCATATTCTAGGATAAGCTGTAACAGTGCGTATTAGCGCAGTTCATGGCATTATGGCTACAGCTTAAACGTGGAAAGAGTAAATAAAATTTTGTTAAATTGACACAGACTTTTCCAAGACGATGTGTTTTGTCTGT--TTTTTGCCAGCAAAGGCCAACTCAAGGACACTTCTCACCCAGCACTCCCGACCCAGACAAGGATAGAGTCAA-GGCCGCTGCAAGTAGGTGTCAGCGCTAGCTTTTCTTCTTGTCTTCACACCCTGGGATGGGGCTGGTGAGGAGTCAAAGCACCCAGTGCTGTAACCGAATATTTAATCACCGGCTCCTTCCTGGTTCGTGATTAGCATTTATTATGCAAAAACACTGCAACTGCTGTATCTGTCCAGTTTAGAAAATGAAGTCTGTTCCTTTTCCAGAGACAGTTTGCTCCCACCACTGTGAGACGTCCAACACGGCACAGCTCCTGACTCAACTCC i rheMac3.chr15 C 0 C 0 s macFas5.chr15 98777328 2202 + 112612857 GGTAAATAGGAAGTATCAATTTAACCAAACATGTGGTATGACCATATTAGGCAAGGACATCTTTGATACAACTATATTacac--aagagtatatatcatataatttcatttataaaagtctagataatacaaactaatctacagtgacagaaagcagatcatttgttgcctgaggaaggtgatatcatggtggcatgaaggattccaaatgggcacaggcaacctttacagcatgataaatatgctcatttttctttacgttcatgatggcttcacaggtgtttatgcataccaaaacttttcaaactctacactttaaatatgctcactttattgtatgttaattttatctcaataaaattaaAAACAAAAttttttagatagggtctcaccctgttggccaggctagagtgcagtggtgtgatcatagctcactgcagcctcaaactcctgggctcaagcaatcctcccacctcagcctctgaagtaggtaggatcacaagtgcttgtcaccacacccagctaatttAAATGAAACATTTTTTAACACAACAAAAAA-CATATTGttaaaatgactaactt-taaaaaaaactaacaataccaaatgccagtgaggatacagaacaactagaattctcatgcactgctggttagactgcaaaataatacagccactctgaaaaaccgcttggccgtttttataaagttaaacctggagttctc---------atcaatcctagtccttggtcattacccaaaagaaatgaaaatgtctgatcacgcacaaaaactgttacataaatggtcataggagctttagttataaccatcaagaactggaaacaacccaattatccttcaacaggtgaataaactatgatacatccatcagatgaaatactactcagaaataaatgagaacaaagtattcatacacataacaacacagacaaattcctactcttgcagagagaaagaagcagacctcaagaggttacattctgtatgatt--------------------------------tgtgtgtgtttgtgatggtctaaaaaaggcaaaaccacaaggactggggaagagatt--------------------------------agtgcttgcc---------aggggtttgattttaaaggggtaacatacaagagtttactttttatacaatggagctctcttgcagcctaattgtagtggtggttataaaaacctatacaggtgttaaaacttacagaactatagaccccaagaaaggtcaatAGATACATTTTAAAATTAATTAATTTTAAAAAATCGATGCATCTTGAGTATGTGTAGCAATAAAAGGACAATATTGGATGATGCAACTTAACATCAGTAATTGATGGTCTCTTCCCTAATGACCTGGAAGTCATAGACCAACCTGATGGCCAATCAATTTTCTATGTATAGGCTTTGACTAGAGAGTGACGGAGAGTTTTCTGAACACTGTCTTTCCTTAAAAATGTACCATTAAGTACATGCTACAGATAGAACTATTTCTTATGTATT---CTAAAGCTCTCAGGTAGTAGAAGTGGAAATGTGAGGTGAAATTTTTTATTAAA----------------------------AGTTACTATTAAATAATAACAAGG-AATTATATTTCCAGCAACTTCCTTAAAGTGATTTTATCACAGGTTTCAGTGGTCTAAAATGGCAATACATTTAAGCATATTAAAAGCCATGTAAACATCCTTAAACCTGAAAGCTGAGGATCTGAAAAATTTGAAAGGCATAATTTTGTGCTTTAAATTTCATATAAGCAAAGAACTAATTTGCATATTCTAGGATAAGCTGTAACAGTGCGTATTAGCGCAGTTCATGGCATTATGGCTACAGCTTAAACGTGGAAAGAGTAAATAAAATTTTGTTAAACTGACACAGACTTTTCCAAGACGATGTGTTTTGTCTGT--TTTTTGCCAGCAAAGGCCAACTCAAGGACACTTCTC--------------ACCCAGACAAGGATAGAGTCAA-GGCCGCTGCAAGTAGGTGTCAGCGCTAGCTTTTCTTCTTGTCTTCACACCCTGGGATGGGGCTGGTGAGGAGTCAAAGCACCCAGTGCTGTAACCGAATATTTAATCACCGGCTCCTTCCTGGTTGGTGATTAGCATTTATTATGCAAAAACACTGCAACTGCTGTATCTGTCCAGTTTAGAAAATGAAGTCTGTTCCTTTTCCAGAGACAGTTTGCTCCCACCACTGTGAGACGTCCAACACGGCACAGCTCCTGACTCAACTCC i macFas5.chr15 C 0 C 0 s papAnu2.chr15 94490637 2215 + 107442819 ggtaaatagGAAGTATCAATTTAACCAAACATGTGGTATGACCATATTAGGCAAGGACATCTTTGAGACAACTATATTACACAAAAGagtatatatcatataatttcatttataaaagtcTAGATAATACaaactaatctacagtgacagaaagcagatcatttGTTGCCTGAGGAAGGTGATATCATGGTGGCACGAAGGATTCCAAATGGGCACAGGCAACCTTTACAGCATGATAAATATGCTCATTTTTCTTTACGTTCATGATGGCTTCACAGGTGTTTATGCATACCAAAACTTTTC--ACTCTACACTTTAAATATGCTCactttattgtatgtcaattttatctcaataaaattaaaaacaaaattttttagatagggtctcaccctgttggccaggctagagtgcagtggtgtgatcatagctcactgcagcctcaaactcctgggctcaagcaatcctcccacctcagcctctgaagtaggtAGGATCACAAGTGcttgtcaccacacccagctaatttaaatgaaacattttttaacacaataaaaaa-catattgttaaaatgactaactt-taaaaaaaactaacaataccAAATGCCAGTGAGGATACAGAACAACTAGAATTCTCATGCACTGCTGGTTAGACTGCAAAATAATACAGCCACTCTGAAAAACCGCTTGGCcgtttttataaagttaaacctGGAGTTCTC---------ATCAATCCTAGTCCTTGGTcattacccaaaagaaatgaaaatgtctgATCACGCACAAAAACTGTTACATAAATGGTCATAGGAGCTTTAGTTATAACCATCaagaactggaaacaacccaattatccttcaacaggtgaataaACTATGATACATCCATCAgatgaaatactactcagaaataaatgagaacaaagTATTCATACACATAACAACACAGACAAATTCCTACTCttgcagagagaaagaagcagacCTCAAGAGGTTACATTCTGtatgatt--------------------------------tgtgtgtgtttgtgatggTCTAAAAAAGGCAAAACCACAAGGACTGGGGAAGAGATT--------------------------------AGTGCTTGCC---------AGGGGTTTGATTTTAAAGGGGTAACATACAAGAGTTTACTTTTTATACAATGGAGCGCTCTTGCAGCCTAATTGTAGTGGTGGTTATAAACACCTATACAGGTGTTAAAACTTACAGAACTATAGACCCCAAGAAAGGTcaatagatacattttaaaattaattaatttttaaaaattgatgcatCTTGAGTATGTGTAGCAATAAAAGGACAATATTGGATGATGCAACTTAACATCAGTAATTGATGGTCTCTTCCCTAATGACCTGGAAGTCACAGACCAACCTGATGGCCAATCAATTTTCTATGTATAGGCCTTGACTAGAGAGTGA--GGGAGTTTTCTGAACACTGTCTTTCCTTAAAAATGTACCATCAAGTACATGCTACAGATAGAACTATTTCTTACGTATT---CTAAAGCTCTCAGGTAGTAGAAGTGGAAATGTGAGgtgaaattttttattaaa----------------------------agttacTATTAAATAATAACAAGG-AATTATATTTCCAGCAACTTCCTTAAAGTGATTTTATCACAGGTTTCAGTGGTCTAAAATGGCAATACATTTAAGCATATTAAAAGCCATGTAAACATCCTTAAACCTGAAAGCTGAGGATCTGAAGAATTTGAAAGGCATAATTTtgtgctttaaatttcatataagcAAAGAACTAATTTGCATATTCTAGGATAAGCTGTAACAGTGCGTATTAGCGCAGTTCATGGCATTATGGCTACAGCTTAAACGtggaaagagtaaataaaattttgttaaacTGACACAGACTTTTCCAAGACGatgtgttttgtctgt--tttttgccAGCAAAGGCCATCTCAAGGACACTTCTCACCCAGCACTCGTGACCCAGACAAGGATAGAGTCAAGGGCCTCTGCAAGTAGGTGTCTGCGCTagcttttcttcctgtcttcacaCGCTGGGATGGGGCTGGTGAGGAGTCAAAGCACCCAGTGCTGTAACCGAATATTTAATCACCGGCTCCTTCCTGGTTGGTGATTAGCATTTATTATGCAAAAACACTGCAACTGCTGTGTCTGTCCAGTTTAGAAAATGAAGTCTGTTCCTTTTCCAGAGACAGTTTGCTCCCACCACTGTGAGGCGTCCAACACGGCACAGCTCCTGACTCAACTCC i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 98702571 2215 + 108555830 TGTAAATAGGAAGTATCAATTTAACCAAACATGTGGTATGATCATACTAGGCAAGGATATCTTTGATACAACTATATTACCC--aagagtatatatcatataatttcatttataaaagtctagataatacaaactaatctactgtaacagaaagcagatcatttgttgcctgaggaatgtgatatcatggtggcatgaaggattccaaatgggcacaggcaacctttagagcatgataaatatgctcatttttctttacgttcaggatggcttcacaggtgtttatgcatgccaaaacttttcaaactctacactttaaatatgctcactttattgaatgtcaattttatctcaataaaattaaAAACAAAAttttttagatagggtctcaccctcttggccaggctagagtgcagtggtgtgatcatagctcactgcagcctcaaactcctgggctcaagcaatcctcccacctcagcctcccaagtaggtaggatcacgagtgcttgtcaccacacccagctaatttAAATGAAACATTTTTTAACACAATAAAAAA-CATATTGttaaaatgactaactt-taaaaaaatctaacagtaccaaatgccggtgaggatacagaacaactagaattctcatgcactgctggttagactgtaaaataatatagccactctgaaaaaccgcttggccgtttttataaagttaaacctggagttctc---------atcaatcctagtccttggtcattacccaaaagaaatgaaaatgtctgatcacgcacaaaaactgttacataaatggtcataggagctttagttataaccatcaagaactggaaacaacccaactatccttcaacaggtgaataaactaggatacatccatcagatgaaatactactcagaaataaatgagagcaaagtattcatacacataacaacacagacgaattcctactcttgcagagagaaagaagcagacctcaagaggttatatactgtatgatt--------------------------------tgtgtgtgtttgtgatagtctaaaaaaggcaaaaccacaaggaatggggaagagatt--------------------------------agtgcttgcc---------aggggtttgattttaaaggggtaacatacaagagtttactttttatacaatggagctctcttgcagcgtaattgtagtggtggttataaaaacctatacaggtgttaaaacttacagaactatagaccccaaaaaacgtcaatAGATACATTTTTAAATAAATTAATTTAAAAAAATCGATGCATCTTGAGTATGTGTAGCAATAAAAGGACAATAGTGGATGATGCAACTCAACATCAGTAACTGATGGTCTCTTCCCTAATGACCTGGAAGTCATAGACCAACCTGATGGCCAATCAATTTTCTATGTATAGGCCTTGACTAGAGAGTGAGGGAGAGTGTTCTGAACACTGTCTTTCCTTAAAAATGTACCATTAAGTACATGCTACAGATAGAACTATTTCTTATGTATT---CTAAAGCTCTCAGGTAGTAGAGGTGGAAATGTGAGGTGAAATTTTTTATTAAA----------------------------AGTTACTATTAAATAATAACAAGG-AATTATATTTCCAGCAACTTCCTTAAAGTGATTTTATCACAGGTTTCAGTGGTCTAAAATGGCAATACATTTAGGCATATTAAAAGCCATGTAAACATCCTTAAACCTGAAAGCTGAGGATCTGAAGAATTTGAAAGGCATAATTTTGTGCTTTAAATTTCATATAAGCAAAGAACTAATTTGCATATTCTAGGATAAGCTGTAACAGTGCGTATTAGCGCAGTTCATGGCATTATGGCTACAGCTTAAACGTAGAAAGAGTAAATAAAATTTTGTTAAACGGACACAGACTTTTCCAAGACGATGTGTTTTGTCTGT--TTTTTGCCAGCAAAGGCCATCTCAAGGACGCTTCTCACCCAGCACTCGCGACCCAGACAAGGACAGAGTCAAGGGCCTCTGCAAGTAGGTGTCAGCGCTAGCTTTTCTTCTTGTCTTCACACCCTGGGATGGGGCTGGTAAGGACTCAAAGCACCCACTGCTGTAACCGAATATTTAATCACCCGTTCCTTCCTGGTTGGTGATTAGCATTTATTATGCAAAAACACTGAAACTGCTG--TCTGTCCAGCTTAGAAAATGAAGTCTGTTTCTTTTCCAGAGACAGTTTGCTCCCACCACTATGAGACATCCAACATGGCACAGCTCCTGACTCAACTCC i chlSab2.chr12 C 0 C 0 s calJac3.chr1 77104851 2285 + 210400635 TGTAAATAGGAAGTGTCAATTTAACCAAACATGTGGTATGACCATATTAGACAAGGACATCTTTGATATGACTATATCacacaaaagagtacatatcatatactttcatttagaaaagtctagaaaatgcaaactaacctacagtgacagaaagcaaatcatttgttgccagaggaaggtgatgtcttggtggagtgaagcattccaaatgggcacaggcaacttttagagcatgataaatatgctcatttttctttatgctcatgatggtttcaaaggtgtatatgtatgccaaaatttttcaaactgtacactttaaatatgttcactttattgtatgtcaactttatctcgataacgtttaaaaaaA-----ttgagatagggtctcactctgttggccaggctggagaacagtggtgtgatcacaactcattgcagcttcaaactccggggcttaagtggtcctcccatctcagcctcccaagtagataggaccatgagtacttgtcacgacactcaggtaatttAAATGAAACATTTTTTGACACAATAAAAA--CATATtattaagatgactaactt--taaaaaatctgacaatatgaaatgccagtgacgatacagaacaaccagaattctcatgcactgctggttagactgcaaagtaatacagccactctgaaaaaccacttggccatttttatgaaggtaaacctagagttctcataggacccatcaatcttagtccttggtccttatcctaaaaaaatgaaaatgtatgatca--cacaaaaactgctacatagatggtcataggagttttagttataaccatcaagaactggaaacagcccagttgtccttcagcaggtgaatcaactatggtatatccataagatgaaatactactcagaaataaatgaggacaaagtattcacacacataagaacaaagatgaatccctaatcttgcagagagaaagaagcagacctcaagaggttacatactgtatgattagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgacgttctaaatcaggcaaaactacaaggaatggggaagagatcccattaatttgatgtttaatatcaaacccctgagtgcttgcc--agggctcaggggtttgatattaaaggagtaacatacaagagtttactttgtatgcagtggagctcccttgcatcctaactgtggtagcggtcataaaaatctatacaggtgttaaaacttacagaactaCAGA-CCCAGAAAACGTCAACAGataaattttaaaattaattaatttttaaaaatCGATGCATCGTGAGTGTGTGTAGCAATAAAAGGACAATATTGGATGATGCAACTTAACATCAGTAATTGATGGTCTCTTCCCTAATGACCTGGAAGTCACAGATCAATCTGATGGCCAATCAATATTCAAT------GCCTTGACTAGAGAGTAAGGGAGAGTCTTCTGAACACTGTCTTTCCTTAAAAATTTACCATTAAATACAGGCTACAGATAGAACTATTTCTTATGTCTTCCACCAATGCTCTCAGGTAGTAAAAGTGGCAATTTGAGGTGAAATTTTTCATTAAA----------------------------AGTTACTGTTAAATAATAACAAGGAAATAATATTTCCAGCAACTTTCGTAAAATGATTTTATCACAGGTTTCAATGGACTAAAATGGCAATAAATTTAAGCATATTAAAAGCTATGTAAACATTCTTGAACCTGAAAGCTGAGGATCTGAAGAATATGAAAGGCATACCTTAGTGCTTTAAATTTCATATAAGGAAAGAACGAATTTGCATACTCTAGGACAAGCTGTAATAGTGCATATTAGAACAGTTCATGGCATTATGGCTACAGCTTAAATGTGAAAATAGT----AAAATTTTGTTAAACTGACACAGACTTTTAAAAGATGATGTGTTTTGTCTGTCCTTTTTGCCAGCGAAGGCCAACTCAAGGGCACTTCTCACCCAGCACTCGCGACCCAGGTAAGGGTAGAGACAAGAGCCTCTGCAAGTAGGTGTCAGTGCCAACCGTTCCTCTTGTGTTCACACCCTGGGATGGGGCTGGTGAAGAGTCAGAGCACCCAGTGCTGTAACTGAATATTTAATCACCCGCTCCTTCCGCGTTGGTGATTAACATTTATTACACAAAAACACTGAAACTGCTGTGTCTGTCCGATGTAGGAAATGAAGTCTGTTCCTTTTCCAGAGACAGTTTGCTCTTGCCACCATGAGCCATCCAACACAGCACAGCTCTTGACTCAAATTC i calJac3.chr1 C 0 C 0 a score=380842.000000 s hg38.chr9_GL383542v1_alt 26938 168 + 60032 AGGGAGTCCCCCC-ACTTTTCTGACAAAATAGCTCGGGATGAAGAAGGGACGTTTAAAGTCGGGATGATAAGCATTTTACCTGCTTGAGAAGCACAAAGCCTGCGACTAAAGACAGTCACAGAGTCTGGAAGGAGAAAGGTACTTTAGAAGAAATCATCTAggccaggc s panTro4.chr9 86970635 168 + 137840987 AGGGAGTCCCCCA-ACTTTTCTGACAAAATAGCTCGGGATGAAGAAGGGACGTTTAAAGTCGGGATGATAAGCATTTTACCTGCTTGAGAAGCACAAAGCCTGCGACTAAAGACAGTTACAGAGTCTGGAAGGAGAAAGGTACTTTAGAAGAAATCATCTAggccaggc i panTro4.chr9 C 0 C 0 s nomLeu3.chr1a 76120407 166 - 122973662 AGGGAGTCCCCCC-ACTTTTCTGAGAAAATAGCTCGGGATGAAGAAGGGACGTTTAAAGTCGGGATAATAAGCATTTTACCTGCTTGAGAAGCACAAAGCCTGCGACTAAAGACACT--CAGAGTCTGGGAGGAAAAAGGTACTTTAGAAGAAATCATCTAggccgggc i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 97558288 168 + 112192347 AGGGAGTCCCCCC-GCTTTTCTGAGAAAATAGCTCGGGATGAAGAAAAGACATTTAAAGTCGGGATGATAAGCATTTTACCTGCTTGAGAAGCACAAAGCCTGCGACTAAAGACACTCACAGAGTCTGGGAGGAGAAAGGTACTTTAGAAGAAATCATCTAggccgggt i rheMac3.chr15 C 0 C 0 s macFas5.chr15 98779530 168 + 112612857 AGGGAGTCCCCCC-GCTTTTCTGAGAAAATAGCTCGGGATGAAGAAAAGACATTTAAAGACGGGATGATAAGCATTTTACCTGCTTGAGAAGCACAAAGCCTGCGACTAAAGACACTCACAGAGTCTGGGAGGAGAAAGGTACTTTAGAAGAAATCATCTAggccgggt i macFas5.chr15 C 0 C 0 s papAnu2.chr15 94492852 166 + 107442819 AGGGAGTCCCCCC-GCTTTTCTGAGAAAATAGCTCGGgatgaagaaaagacattt-aagtCGGGATGATAAGCATTTTACCCGCTTGAGAAGCACAAAGCCTGCGACTAAAGACACTCACAGAGTCTGGGAGGAGAAAGGTAC-TTAGAAGAAATcatctaggccaggt i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 98704786 167 + 108555830 AGGGAGTCCCCCCTGCTTTTCTGAGAAAATAGCTCGGGATGAAGAAAAGACACTTAAAGTCGGGATGATAAGCATTTTACCTGCTTGAGAAGCACAAAGCCTGCGACTAAAGACACT--CAGAGTCTAGGAGGAGAAAGGTACTTTAGAAGAAATCATCTAggccaggt i chlSab2.chr12 C 0 C 0 s calJac3.chr1 77107136 166 + 210400635 AGGGAGTCCCCAG-GCCTTTCTAAGAAAATAGCTTGGGATGAAGAA-GGACATTTAAAGTCAGGATGATACACATTTTACCTGCCTGAGAAGCACAAAGCCTCTGACTAAAGAC-CTTGCAGAGTCTGGGAGGAGAAAGGTACTTTAGAAGAAATCACCTAggctgggt i calJac3.chr1 C 0 C 0 e ponAbe2.chr9 83602171 434 + 135191526 M a score=773424.000000 s hg38.chr9_GL383542v1_alt 27106 273 + 60032 gcggtggctcacgcctgtattcccagcactttgggaggccgaggagggtggatcacctgagatcaggagttcaagaccagcctggtcaacatggcaaacccccatctctactaaaaatacaaaaattagctgggcatggtggcgggcagctgtaatcccagctactcaggaggctgaggcaggagaattgcttgaacccaggaggcagaggttgcggtgagctgaggtcattccattgcactccagcctgggcgacagagcaagactccgtct s panTro4.chr9 86970803 273 + 137840987 gcggtggctcacgcctgtattcccagcactttgggaggccgaggagggtggatcacctgaggtcaggagttccagaccagcctggtcaacatggcaaacccccatctctactaaaaatacaaaaattagctgggcatggtggcgggcagctgtaatcccagccactcaggaggctgaggcaggagaatcgcttgaacccgggaggcagaggttgtggtgagctgaggtcattccattgcactccagcctgggcgacagagcaagactccgtct i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83602607 273 + 135191526 gcggtggctcacgcctgtattctcagcactttgggaggccgaggaggctggatcacctgaggtcaggagtttaagaccagcccgggcaacatggcaaacccccatctctactaaaaatacaaaaattaactgagcatggtggcgggcagctgtaatctcagctactcaggaggctgaggcaggagaatcgcttgaacccgggaggcagaggttgcggtgagctgagatcattccattgcactccagcctgggcgacagagcaagactctgtct i ponAbe2.chr9 M 434 C 0 s nomLeu3.chr1a 76120573 273 - 122973662 gcggtggctcacgcctgtattcccagcactttgggaggccgaggcgggtggatcacctaaggtcaggagttcaagaccagcctggccaacatggcaaacccccgtctcaactaaaaatacaaaaattagctgggtgtggtggcggatgcctgtaatcccagctactcaggaggctgaggcaggagaattgcttgaacctgggaggcagaggttgcagtgagccgagatcatgccattgcactccagcctgggtgacagagcaagactctgtct i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 97558456 273 + 112192347 gcggtggctcacgcctgtattcccagcactttgggaggcctaggcgggtggatcacctgaggtcaggagttcaagaccagcgtggcaaacagggcaaattcccaactctactaaaaatacaaaaattagctgggcatggtggtgggaacctgtaatcccagctactcgggaggctgagccaggagaatcgcttgaacccaggaggcagacgttgcagtgaacggagattgtgcccctgcactccagcctgggtggcagagcgagactctgtct i rheMac3.chr15 C 0 I 50 s macFas5.chr15 98779698 273 + 112612857 gcggtggctcacgcctgtattcccagcactttgggaggcctaggcgggtggatcacctgaggtcaggagttcaagaccagcgtggccaacagagcaaattcccatctctactaaaaatacaaaaattagctgggcatggtggtgggcacctgtaatcccagctactcgggaggctgaggcaggagaatcgcttgaacccaggaggcagaggttgcagtgagcggagattgtgccactgcactccagcctgggtgacagagcaagactctgtct i macFas5.chr15 C 0 C 0 s papAnu2.chr15 94493018 273 + 107442819 gcggtggctcacgcctgtattcccagcactttgggaggccgaggcgggtggatcacctgaggtcaggagttcaagaccagcctggccaacagggcaaattcccatctctactaaaaatacaaaaattagctgggcatggtggcgggcacctgtaatcccagctactcgggaggctgaggcaggagaatcgcttgaacccaggaggcagaggttgcagtgagccgagattgtgccatttcactccagcctgggcaacagagcaagactccgtct i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 98704953 273 + 108555830 gcggtggctcacgtctgtattcccagcactttgggaggccgaggcgggtggatcaactgaggtcaggagttcaagaccagcctggccaacagggcaaattcccatctctactaaaaatacaaaaattagctgggcatggtggtgggcacctgtaatcccagctactcaggaggctgaggcaggacaatcgcttgaaccgggaaggcagaggttgcagtgagctgagattgtgccactgcactccagcctgggcgacagagcaagactccgtct i chlSab2.chr12 C 0 I 1 s calJac3.chr1 77107302 265 + 210400635 gtggtggctcacacctgta-acccagcactttgggatgacaaggcaggtggattacgtgaggtcaggagtttaagagcagcctggctaacatgatgaaaccccgtttctaccaaaactacaaaaattagctgggtgcagtggcggtcacctgtaatcccagctactcaggaggctgaggcaggagaattgcttgatcctggaa---agtgatctcagtgagctgagattgcaccattgcactccagcctaggca--agagcaaaactccat-- i calJac3.chr1 C 0 C 0 a score=1010.000000 s hg38.chr9_GL383542v1_alt 27379 2 + 60032 ca s panTro4.chr9 86971076 2 + 137840987 ca i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83602880 2 + 135191526 ca i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76120846 2 - 122973662 ca i nomLeu3.chr1a C 0 C 0 s macFas5.chr15 98779971 2 + 112612857 ga i macFas5.chr15 C 0 C 0 e calJac3.chr1 77107567 0 + 210400635 C e chlSab2.chr12 98705226 1 + 108555830 I e papAnu2.chr15 94493291 0 + 107442819 C e rheMac3.chr15 97558729 50 + 112192347 I a score=3988.000000 s hg38.chr9_GL383542v1_alt 27381 9 + 60032 taaacaaga s panTro4.chr9 86971078 9 + 137840987 taaagaaga i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83602882 9 + 135191526 aaaagaaga i ponAbe2.chr9 C 0 C 0 s macFas5.chr15 98779973 9 + 112612857 aaaaaaaGA i macFas5.chr15 C 0 M 1181 s calJac3.chr1 77107567 5 + 210400635 ----caaga i calJac3.chr1 C 0 C 0 e chlSab2.chr12 98705226 1 + 108555830 I e papAnu2.chr15 94493291 0 + 107442819 C e rheMac3.chr15 97558729 50 + 112192347 I e nomLeu3.chr1a 76120848 0 - 122973662 C a score=9290.000000 s hg38.chr9_GL383542v1_alt 27390 17 + 60032 agaaggaagaagaagaa s panTro4.chr9 86971087 17 + 137840987 agaaggaagaagaagga i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83602891 17 + 135191526 agaaggaagaagaagaa i ponAbe2.chr9 C 0 C 0 s chlSab2.chr12 98705227 16 + 108555830 aaaaaaaagaggaagg- i chlSab2.chr12 I 1 C 0 s calJac3.chr1 77107572 17 + 210400635 agaaggaggaggaggat i calJac3.chr1 C 0 C 0 e papAnu2.chr15 94493291 0 + 107442819 C e macFas5.chr15 98779982 1181 + 112612857 M e rheMac3.chr15 97558729 50 + 112192347 I e nomLeu3.chr1a 76120848 0 - 122973662 C a score=20419.000000 s hg38.chr9_GL383542v1_alt 27407 102 + 60032 gaaggagaagaagaagaaggagaaggagaaggggaaggagaaagagaggaggaagaggaaggaggaagaggaggaggaggaggagggaagaagaagaagaag s panTro4.chr9 86971104 64 + 137840987 ggaggagaag---------------gagaaggggaaggagaaagagaggaggaagaggaagaaggaggaggaggaggag----------------------- i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83602908 82 + 135191526 ggagaagaag---------------aagacggagaagaaggagaggaagaggaagaggaag-aggaagaggaagaggaa----gaagaagaagaagaagagg i ponAbe2.chr9 C 0 C 0 s chlSab2.chr12 98705243 85 + 108555830 gggggagagg---------------aggggagggaggaggagggaggggaggaggagggag--ggaggaggaggaggaggaggagggaggaggaggaggagg i chlSab2.chr12 C 0 C 0 e calJac3.chr1 77107589 0 + 210400635 C e papAnu2.chr15 94493291 0 + 107442819 C e macFas5.chr15 98779982 1181 + 112612857 M e rheMac3.chr15 97558729 50 + 112192347 I e nomLeu3.chr1a 76120848 0 - 122973662 C a score=-1284.000000 s hg38.chr9_GL383542v1_alt 27509 10 + 60032 aag-agaagaa s panTro4.chr9 86971168 2 + 137840987 ---------aa i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83602990 11 + 135191526 aagaagaggaa i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76120848 10 - 122973662 -aaaaaaaaaa i nomLeu3.chr1a C 0 C 0 s chlSab2.chr12 98705328 5 + 108555830 ------aggag i chlSab2.chr12 C 0 C 0 e calJac3.chr1 77107589 0 + 210400635 C e papAnu2.chr15 94493291 0 + 107442819 C e macFas5.chr15 98779982 1181 + 112612857 M e rheMac3.chr15 97558729 50 + 112192347 I a score=4635.000000 s hg38.chr9_GL383542v1_alt 27519 11 + 60032 ggagaaggaga s panTro4.chr9 86971170 11 + 137840987 ggagaaggaga i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83603001 11 + 135191526 gaagaggaaga i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76120858 11 - 122973662 aaagaaGAGga i nomLeu3.chr1a C 0 C 0 s papAnu2.chr15 94493291 11 + 107442819 gaaaaaaaaga i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 98705333 4 + 108555830 ------ggag- i chlSab2.chr12 C 0 C 0 e calJac3.chr1 77107589 0 + 210400635 C e macFas5.chr15 98779982 1181 + 112612857 M e rheMac3.chr15 97558729 50 + 112192347 I a score=755.000000 s hg38.chr9_GL383542v1_alt 27530 1 + 60032 a s panTro4.chr9 86971181 1 + 137840987 a i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83603012 1 + 135191526 a i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76120869 1 - 122973662 a i nomLeu3.chr1a C 0 C 0 s macFas5.chr15 98781163 1 + 112612857 a i macFas5.chr15 M 1181 C 0 s papAnu2.chr15 94493302 1 + 107442819 g i papAnu2.chr15 C 0 C 0 e calJac3.chr1 77107589 0 + 210400635 C e chlSab2.chr12 98705337 0 + 108555830 C e rheMac3.chr15 97558729 50 + 112192347 I a score=-928.000000 s hg38.chr9_GL383542v1_alt 27531 11 + 60032 gaggaag-agga s panTro4.chr9 86971182 2 + 137840987 ga---------- i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83603013 12 + 135191526 gaggaagaagaa i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76120870 11 - 122973662 gaagaag-gaga i nomLeu3.chr1a C 0 C 0 s macFas5.chr15 98781164 11 + 112612857 gaaggagaagg- i macFas5.chr15 C 0 C 0 s papAnu2.chr15 94493303 11 + 107442819 gaagaagaagg- i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 98705337 10 + 108555830 -gaggaggagg- i chlSab2.chr12 C 0 I 1 s calJac3.chr1 77107589 11 + 210400635 gagaaagaaga- i calJac3.chr1 C 0 C 0 e rheMac3.chr15 97558729 50 + 112192347 I a score=449777.000000 s hg38.chr9_GL383542v1_alt 27542 186 + 60032 agaagaagaagaagaagaagaagaag----------aagaagaagaagaagaagaaATAATCATCTAAAGTAAACCAATGGACTCATTCAACTAATAGTACCACCAGGGCGGGGCAGGGGTTAAGGTGGGCATATAAACTGGGGCATAGTTGACAGCTCGGTTGATGGCAGCTCTACCTTTGcaaacctatttagc s panTro4.chr9 86971184 165 + 137840987 ---------------------acagg----------aagaggaagaagaagaaCAACTAATCATCTAAAGTAAACCAATGGGCTCATTCAACTAGTAGTACCACCAGGGCGGGGCAGGGGTTAAGGTGGGCATATAAACTGGGGCATAGTTGACAGCTCGGTTGATGGCAGCTCTACCTTTGCAAACCTATTTAGC i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83603025 186 + 135191526 agaagaagaagaagaagaagaagaag----------aagaagaagaagaagaagaaATAATCCTCTAAAGTAAACCAATGGACTCATTCAACTAATAGTACCACCAGGGCGGGGCAGGGGTTAAGGTGGGCATATAAACTGGGGCATAGTTGGCAGCTCGGTTGATGGCAGCTCTACCTTTGCAAACCTATTTAGC i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76120881 181 - 122973662 aggagaaggagaaggagagggagaGG----------AAGAGGAAGGAGAAGAAGAAATAATCATCTAAAGTAAACCAATGGACTCATTAAACTAATAGTATCACCA-----GGGCAGGGGTAAAGGTGGGCATATAAACTGGGGCATAGTTGGCAGCTCGGTTGATGGCAGCTCTACCCTTGCAAACCTACTTAGC i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 97558779 186 + 112192347 agaaggagaagcagaaggagaaggag----------aagaaggagaaggagaaggagaaATCATCTAAATTAAACCAATGGACTCATTCAACTAATAGTACCACCAGGGCGGGGCAGGGGTTAAGGCGCGCATATAAACTGGGGCATAGTTGGCAGCTTGATCGATGGCAGCTCTACCCTTGCAAACGTACTTAGC i rheMac3.chr15 I 50 C 0 s macFas5.chr15 98781175 186 + 112612857 agaaggagaaggagaaggagaaggag----------aagaaggagaaggagaaggagaaATCATCTAAATTAAACCAATGGACTCATTCAACTAATAGTACCACCAGGGCGGGGCAGGGGTTAAGGCGCGCATATAAACTGGGGCATAGTTGGCAGCTTGGTTGATGGCAGCTCTACCCTTGcaaacgtacttagc i macFas5.chr15 C 0 C 0 s papAnu2.chr15 94493314 186 + 107442819 aggaggagaaggaagaggaaaaggag----------gaggaggaggaggaggaggagaagtcaTCTAAATTAAACCAATGGACTCATTCAACTAATAGTACCGTCAGGACGGGGCAGCGGTTAAGGCGTGCATATAAACTGGGGCATAGTTGGCAGCTTGGTCGATGGCAGCTCTACCCTTGCAAACGTACTTAGC i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 98705348 174 + 108555830 ----------------------ggannnnnnnnnncgaggaggaggaggaggaggagAAATCATCTAAATTAAGCCAATGGACTCATTCAACTAATAGTACCATGAGGGCGGGGCAGGGGTTAAGGTGCGCATATTAACTGGGGCATAGTTGGCAGCTTGGTCGATGGCAGCTCTACCCTTGCAAACCTACTTAGC i chlSab2.chr12 I 1 C 0 s calJac3.chr1 77107600 183 + 210400635 --aagaagaggaagaggaggaggaag----------aagaagaagaagaaaaagaagaagTCATCTAAAG-AAACCATTGAACTTGTTCAATGAATACTATAGCCAGGGTGAGGTGGGGGTTACGGTTGGTGTATAGACTGGGGCATAGTTGGCAGATTGGTCGATGGCAGCTATACCCTTGCAAATGTGCTTAGT i calJac3.chr1 C 0 C 0 a score=375659.000000 s hg38.chr9_GL383542v1_alt 27728 177 + 60032 aa-ggaaatggaagtcagtttccttgtttttcaggtaagaagctaagggagaaagttcagggaggtgaaacaatttaccacgttcaaggagctggcaggtggcagagctgaacccagcagtggcactcctgattctgagtcggtCATGCCGCCCTTGAGGGCAGAAGGCAGCAGCCCT s panTro4.chr9 86971349 178 + 137840987 AAAGGAAATGGAAGTcagtttccttgtttttcaggtgagaagctaagggagaaagttcagggaggtgaaacaatttaccacgttcaaggagctggcaggtggcagagctgaacccagcagtggcactcctgattctgagtcggtCATGCCGCCCTTGAGGGCAGAAGGCAGTAGCCCT i panTro4.chr9 C 0 C 0 s nomLeu3.chr1a 76121062 178 - 122973662 AGAGGAAATGGAAGTcagtttccttgtttttcaggtaaaaaactaagggagaaagttcagggaggtgaaacaatttaccacatttaaggagctggcaggtggcagagctgaacccagcagtggcgctcctgattctgagtcagtCATGCCGCCCTTGAGGGCAGGAGGCAGCAGCCCC i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 97558965 157 + 112192347 AGAGGAAATGGAAGTCAGTTtccttgtttttcaggtaagaagctaagagagaaagttcagggaggtgaaacaatttaccactttcaaggagttggcaggtggcagagccgaacccagcagtggcgctcctgattctgagt---------------------cAGGAGGCAGCAGCCCA i rheMac3.chr15 C 0 C 0 s macFas5.chr15 98781361 157 + 112612857 agaggaaatggaagtcagtttccttgtttttcaggtaagaagctaagagagaaagttcagggaggtgaaacaatttacccctttcaaggagttggcaggtggcagagccgaaaccagcagtggcgctcctggttctgagt---------------------cAGGAGGCAGCAGCCCA i macFas5.chr15 C 0 C 0 s papAnu2.chr15 94493500 157 + 107442819 AGAGGAAATGGAAGtcagtttccttgtttttcaGGTAAGAAGCTAAGAGAGAAAGTTCAGGGAGGTGAAACAATTTACCACTTTCAAGGAGTTGGCAGGTGGCAGAGCTGAACCCAGCAGTGGCGCTCCTGATTCTGAGT---------------------CAGGAGGCAGCAGCCCA i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 98705522 157 + 108555830 AGAGGAAATGGAAGTCAGTTtccttgtttttcaggtaagaagctaagagagaaagttcagagaggtgaaacaatttaccactttcaaggagttggcaggtggcagagctgaactcagcagtggcgctcctgattctgagt---------------------cAGGAGGCAGCAGCCCA i chlSab2.chr12 C 0 C 0 s calJac3.chr1 77107783 178 + 210400635 AGAGGAAATGGAAGTcagtttccttgtttttcaggtaagaagctaagggagaaagttcagggaggtgaaacaatttaccaagttcaaggagctggcaggtggcagagctgagcccagcagtggtgatcctgattctgagttgatcatgccacctttgAGGGCAGGAGGCAGCAGGCCC i calJac3.chr1 C 0 C 0 e ponAbe2.chr9 83603211 0 + 135191526 C a score=6081028.000000 s hg38.chr9_GL383542v1_alt 27905 2032 + 60032 AGGAGTCAGGTGCCTGGGCAGGCGTCTCAGGTGACAGGCTCCAGGCCAGCTGCACGGGGCTGGTCCAGGGGTTGCCTCCACCGTGTGAGACCTTTCCAGGCTCCTCCTGCCTCACACTGGGTCCTTCCCAGAGCTGAAATCAAAGTGGGTCCAATCCCATTTACACACGAGCTGCAGGTGCTTACCCCTGTGCAGGGATATCAAATCTGTGAAGGGAAGGAGACAAATGCCCTCAACTGGGAATGGCAGGCCATGAAGGGG-----CGGGCACTGAGGTGAGCTAGGGGCTTCTCTACCCCACACACAAACTGAGTAACCCAAACATTCTACCAGCTGCAAAGCTGATACTCTGACAGCAGCCAGCGGCAAGACGTTGAACCACTTTGTC-AAGTAGCTCTTAG---GGAGGACCAAACTGAGAGGAAAAATCCGTTTTTCTCAAAGTCATTTGCTTCCAGGGCACAGTGTTTTTGCAGTCCATCTCCTCTCTCCCCAGCACCTTGGCCTGGTGT----------TAAAGTTCAGTCCATATCCATCAAATTGAAGGCAGCAGCTTCCTGGGGCCTCCCGCCTTAGACTCAGGTGTTTAGACAAAAAGTATTTCAGGTAGTTAGTACTAAGTGGAACTCAAAGCGGAGAGCAAATAGACACC-CCCAGGGTTTACTGACCCTCCTCAAGCTCTCAGGTTGGTGGAGATTTCAAAGGTCCTTCGGGTGCCATAGCATGGCCTGCCTCCTCGACTGCACGGTGACACCCTCATATCCTGTTCATGAAGATATTGCACAGGAAAGATGCATCTAGAGACATGTTCCTGGCAGAGGCTGCCAAGCCCACATCTCCAGGTTTGCAGTTCACACAATCATAGGGTGTCTCTTCAGCAAAGTGTTTGCTATTTCTAACAACGGTCTCTGGGAAAGGTTATCAGATTTCATTCAACTGACCCATTAAAACTTCAAGTTCGATACCTTTCTTGCCTTTCCTTTATTTGTACTCAGTTGAAACAAGGTGGAGCCCTGGAGCCCACTGTGCTGAATGGGCTTCCTGCTTCAGTAAGGGAGAGGATGTCCACACAGTAATGCCTGGAGCCCCTCAGGCACACCAAGTGGTACTCCCACCCCTTACTGCCCCTACTTCCTTTACAAGCACAGAAACTGATGCCAGCCAAGTTAGGAATAAAGGAAGAATTAGGAGCATGCCAGACACTCCCCGGAAGGCTGAAGAATGGAGATCAGAAACCATGGGAACCAGGGCAGCAAGAACAGCTCGG------CCACCTCTTCACACTTCATTTTGAAATGAATGAACCCCCAACTCACTCCTCATATTTGCATTAGTCCACTGGAGGCA-AAATCCCAGCGGAGGGCCTGGTTGGCCCTCTTTACAGCAAATGCCCACCATTTGAATGTGGCTAAGGCTGTG-GAAAAAAGGCTCTGCTAGGAAGGGCCCACTGGTTTCTGAACAGGGAGCAAAGGGAACTTTGATTTACATCCCCACCAAGCCTTTACCCAG-------------------------------------------------TGAAGAATAGGAATTCCCAAAATGGAACT--CAGGATGCTTACAGAGAAGGAGATATGGTAAGGGAGCAGGCAAAACAAGATGCTGTCCACAAAACCGCTCTATCAGGGCAGTGGATGGAGCTGTGGACTCCTCAGAGGATGTCTACACCATGGTCAACCCTGGGCCCTTTAAGCTGGCAATGGCGGCGACCTTGTCTTGTACTCAGCAGGACTCTCTCGCCTCCTCTTCCTCAAGCCCATTCCCTCTGTTTGCTGTGGGAAAGGTGAATGGGCGCTCAGATTCATCCAGGTTTCAGAGCTGGAGAGGGCTGGAGAGATTTCTAGCCGGAGCCCTGTCAGGGAGGAAATTGTGGATTGAAGAGGACGTGGACACCAT----GAGAAGGGTCAATGAGGAATGAAATGCTTTGCCTCAGCATTGGAAGATCACTCA-Gggacaggcaccgtggctcatgactatcatcccagcactttgggagcccgaagccggggga-tcatttgaggccaggagttcaagaccatcctggacaacatagtga s panTro4.chr9 86971527 2032 + 137840987 AGGAGTCAGGTGCCTGGGCAGGCGTCTCAGGTGACAGGCTCCAGGCCAGCTGCACGGGGCTGGTCCAGGGGTTGCCTCCACCGTGTGAGACCTTTCCAGGCTCCTCCTGCCTCACACTGGGTCCTTCTCAGAGCTGAAATCAAAGTGGGTCCAATCCCATTTACACACTAGCTGCAGGTGCTTACCCCTGTGCAGGGATATCAAATCTGTGAAGGGAAGGAGACAAATGCCCTCAACTGGGAATGGCAGGCCATGAAGGGG-----CGGGCACTGAGGTGAGCTAGGGGCTTCTCTACCCCACACACAAACTGAGTAACCCAAACATTCTACCAGCTGCAAAGCTGATACTCTGACAGCAGCCAGCGGCAAGACGTTGAACCACTTTGTC-AAGTAGCTCTTAG---GGAGGACCAAACTGAGAGGAAAAATCCGTTTTTCTCAGAGTCATTTGCTTCCAGGGCACAGTGTTTTTGCAGTCCATCTCCTCTCTCCCCAGCACCTTGGCCTGGTGT----------TAAAGTTCAGTCCATATCCATCAAATTGAAGGCAGCAGCTTCCTGGGGCCTCCCGCCTTAGACTCAGGTGTTTAGACAAAAAGTATTTCAGGTAGTTAGTACTAAGTGGAACTCAAAGCGGAGAGCAAATAGACACC-CCCAGGGTTTACTGACCCTCCTCAAGCTCTCAGGTTGGTGGAGATTTCAAAGGTCCTTCGGGTGCCATAGCATGGCCTGCCTCCTCGACTGCACGGTGACACCCTCATATCCTGTTCATGAAGATATTGCACAGGAAAGATGCATCTAGAGACATGTTCCTGGCAGAGGCTGCCAAGCCCACATCTCCAGGTTTGCAGTTCACACAATCATAGGGTGTCTCTTTAGCAAAGTGTTTGCTATTTGTAACAACGGTCTCTGGGAAAGGTTATCAGATTTCATTCAACTGACCCATTAAAACTTCAAGTTCGATACCTTTCTTGCCTTTCCTTTATTTGTACTCAGTTGAAACAAGGTGGAGCCCTGGAGCCCACTGTGCTGAATGGGCTTCCTGCTTCAGTAAGGGAGAGGATGTCCACACAGTAATGCCTGGAGCCCCTCAGGCACACCAAGTGGTACTCCCACCCCTTACTGCCCCTACTTCCTTTACAAGCACAGAAACTGATGCCAGCCAAGTTAGGAATAAAGGAAGAATTAGGAGCATGCCAGACACTCCCCGGAAGGCTGAAGAATGGAGATCAGAAACCATGGGAACCAGGGCAGCAAGAACAGCTCGG------CCACCTCTTCACACTTCATTTTGAAATGAATGAACCCCCAACTCACTCCTCATATTTGCATTAGTCCACTGGAGGCA-AAATCCCAGCAGAGGGCCTGGTTGGCCCTCTTTACAGCAAATGCCCACCATTTGAATGTGGCTAAGGCTGTG-GAAAAAAGGCTCTGCTAGGAAGGGCCCACTGGTTTCTGAACAGGGAGCAAAGGGAACTTTGATTTACATCCCCACCAAGCCTTTACCCAG-------------------------------------------------TGAAGAATAGGAATTCCCAAAATGGAACT--CAGGATGCTTACAGAGAAGGAGATATGGTAAGGGAGCAGGCAAAACAAGATGCTGTCCACGAAACCACTCTATCAGGGCAGTGGATGGAGCTGTGGACTCCTCAGAGGATGTCTACACCATGGTCAACCCTGGGCCCTTTAAGCTGGCAATGGCGGCGACCTTGTCTTGTACTCAGCAGGACTCTCTCGCCTCCTCTTCCTCAAGCCCATTCCCTCTGTTTGCTGTGGGAAAGGTGAATGGGCGCTCAGATTCATCCAGGTTTCAGAGCTGGAGAGGGCTGGAGAGATTTCTAGCTGGAGCCCTGACAGAGAGGAAATTGTGGATTGAAGAGGACGTGGACACCAT----GAGAAGGGTCAATGAGGAATGAAATGCTTTGCCTCAGCATTGGAAGATCACTCA-Gggacaggcaccgtggctcatgactatcatcccagcactttgggagcccgaagccggggga-tcatttgaggccaggagttcaagaccatcctggacaacatagtga i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83603211 2029 + 135191526 AGGAGTCAGGTGCCTGAGCAGGCGTCTCAGGTGACAGGCTCCAGGCCAGCTGCACGGGGCTGGCCCAGGGGTCGCCTCCACCGTTTGAGACCTTTCCAGGCTCCTCCTGGCTCTCACTGGGTCCTTCCGAGAGCTGAAATCAAAGTGGGCCCAATCCCATTTACACACAAGCTGCAGGCGCTTACACCTGTGCAGGGATATCAAATCTGTGAAGGGAAGGAGACAAACGCCCTCAACTGGGAATGACAGGCCACGAAGGGG-----CGGGCACTGAGGTGAGCCAGGGGCTTCTCTACCCCACACACAACCTGAGTAACCCAAACATTCCACCACCTGCAAAGCTGATACTCTGACAGCAGCCAGCGGCAAGACGTTGAACCACTTTGTCAAAGTAGCTCTTAG---GGAGGACCAAACTGAGAGGAAAAATCCATTTTTCTCAAAGTCATTTGCTTCCGGGGCACTGTGTTTTTGCAGTCCGTCTCCTCTCTCCCCAGCACTTTGGTCTGGTGT----------TAAAGTTCAGTCCATATCCATCAAATTGAAGGCAGCAGCTTCCTGGGGCCTCCCGCCTTAGACTCAGGTGTTTAGACAAAAAGTATTTCAGGTAGTTAGTACTAAGTGGAACTCAAAGCGGAGAGCAAATAGACACC-CCCA-GGTGTCTCAACCCTCCTCAAGCTCTCAGGTTGGTGGAGACTTCAAAGGTCCTTTGGGTGCCATAACATGGCCTGCCTCCTCGACTGCACAGTGACACCCGCATATCCTGTTCATGGAGATATTGCACAGGAAAGATGCATCTAGAGACATGTTCCTGGCAGAGGCTGCCAAGCCCACATCTCCAGGTTTGCAGTTCACACAATCATAGGGTGTCTCTTTAGCGAAGTGTTTGCTATTTGTAACAATGGTCTCTGGGAAAGTTTATCAGATTTCATTCAACTGACCCATTAAAACTTCAAGTTCGATACCTTGCTTGCCTTTCCTTTATTTGTACTCAGTTGAAACAAGGTGGAGCCCTGGAGCCCACTGTGCTGAATGGGCTTC---CTTCAGTAAGGGAGAGGATGTCCACACAGTAATGCCTGGAGCCCCTCGGGCACACCAGGTGGTACTCCCACCCCTTACTGCCCCTACTTCCTTTACAAGCACAGAAACTGATGCCAGCCAAGTTAGGAATAAATGAAGAATTAGGAGCATGCCAGACACTCCCTGGAAGGCTGAAGAATGGAGATCAGAAACCATGGGAGCCAGGGCAGCAAGAACAGCTCGG------CCACCTCTTCACACTTCATTTTGAAATGAATGAACCCCCAACTCACTCCTCATATTTGCATTAGTCCACTGGAGGCA-AAATCCCAGCGGAGGGCCTGGTTGGCCCCCTTTACAGCAAATGCCCACCATTTGAATGTGGCTAAGGCTGTG-GAAAAAAGGCTCTGCTAGGAAGGGCCCACTGGTTTCTGAACAGGGAGCAAACGGAACTTTGATTTACATCCCCACCAAGCCTTTACCCAG-------------------------------------------------TGAAGAACAGGAATTCCCAAAATGGAACT--CAGGATACTTACAGAGAAGGAGATATGGTAAGGGGGCAGGCAAAACAAGACGCTGTCCACGAAATCACTCTATCAGGGCAGTGGATGGAGCTGTGGACTCCTCAGAGGATGTCTACACCATGGTCAACCCTGGGCTCTTTAAGCTGGCAATGGCGGCGACCTTGTCTTGTACTCAGCAGGACTCTCTCACCTCCTCTTCCTCAAGCCCATTCCCTCTGTTTGCTGTGGGAAAGGTGAATGGGCGCTCAGATTCATCCAGGTTTCAGAGCTGGAGAGGGCTGGAGAGATTTCTAGCCGGAGCCCTGACAGGGAGGAAATTGTGTATTGAAGAGGACGTGGACACCAT----GAGAAGGGTCAATGAGGGATGAAATGCTTTGCCTCAGCATTGGAAGATCACTCA-Gggacaggcaccgtggctcatgactatcatcccagcactttgggagcccaaagccagggga-tcatttgaggccaggagttcaaggccatcctggacaacatagtga i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76121240 2026 - 122973662 AGGAGTCAGGTGCCTGGGCAGGCGTCTCAGGCTCCAGGCTCCAGACCAGCTCCACAAGGCTGGCCCAGAGGTCGCCTCCACTGTGTGAGACCTTTCCAGGCTCCTCCTGGCTCGCACTGGGTCCTTCTCAGAGCTGAAATCAAAGTGGGCCCAATCCCATTTACACACGAGCTGCAGGTGCTTACCCCTGCACAGGGATATCAAATCTGTGAAGGGAAGGAGACAAATGCCCTCAGCTGGGACTGGCAGGCCATGAAGGGG-----CAGGCACTGAGGTGAGCCAGGGGCTTCTCTACCCCACACACAACCTGAGTAACCCAAACATTCTACCAGCTGCAAAGCTGATACTCTGACAGCAGCCAGCGGCAAGACGTTGAACCATTTTGTCAAAGTAGCTCTTAG---GGAGGACCAAACTGAGGGGAAAAATCCATTTTTCTC--AGTCATTTGCTTCCAGGGCACAGTGTTTTTGCAGTCCTTCTCCTCTCTCCCCAGCGCCTTGGCCTGGTGT----------TAAAGTTCAGTCCATACCCATCAAATTAAAGGCAGCAATTTCCTGGGGCCTCCTGCCTTAGACTCAGGTGTTTAGACGAAAAGCATTTCAGGTAATTAGTACTAAGTGGAACTCAAAGCGGAGAGCAAATAGACACC-CCCAGGGTTTACTGACCCTCCTCAAGCTCTCAGGTTGGTGGAGACTTCAAAGGTCCTTCGGGTGCCATAGCATGGCCTGCCTCCTCGACTGCACAGTGACACCCGCATATCCTGTTCATGAAGATATTGCACAGGAAAGATGCATCTAGAGACATGTTCCTGGCGGAGGCTGCCAAGCCCACATCTCCAGGTTTGCGGTTCACACAATCATAGGGTGTCTCTTTAGCAAAATGTTTGCTATTTGTAACAGTGGTCTCTGGGAAAGTTTATCAGATTTCATTCAACCGACCCATTAAAACTTCAAGTTCAATTCCTTGCTTGCCTTTCCTTTATTTGTACTCAGTTGAAACAAGGTGGAGCCCTGGAGCCCACTGTGCTGAATGGGCTTCCTGCTTCAGTAAGGGAGAGGATGTGCACACAGTAATGCCTGGAGCCCCTGAGGCACACCAGGTGGTACTCCCACCCCTTACTGCCCCTACTTCCTTTACAAGCACAGAAACTGATGCCAGCCAAGTTAGGAATAAAGGAAGAATTAGGAGCATGCCAGACACTCCC-GGAAGGCTGAAGAACGGAGGTCAGAAACCATGGGAACCAGGGCGGCAAGAGCAGCTCGG------CCACCTCTTCACACTCCATTTTGAAATGAATGAACCCCCAACTCACTCCTCATATTTGCATTCGTCCACTGGAGGCA-AAATCCCAGCGGAGGGCCTGGTTGGCCCCCTTTACAGCAAATGCCCACCATTTGAATGTGGCTAAGGCTGTG-GAAAAAAGGCTCTGCTAGGAAGGGCCCACTGGTTTCTGAACAGGGAGCAAACGGAACTTTGATTTACATCCCCACCAAGCCTTTACCCAG-------------------------------------------------TGAAGAACAGGAATTCCCAAAATGGAACT--CAGGATGCTTACAGAGAAAGAGATATGGTAAGGGGGCAGGCAAAACAAGACGCTGTCCATGAAACCACTCTATCAGGGCAGTGGATGGAGCTGTGGACTCCTCAGAGGATGTC----CCACGGTCAACCCTGGGCTCTTTAAGCTGGCAATGGCGGTGACCTTGTCTTGTACTCAGCAGGACTCTCTCGCCTCCTCTTCCTCAAGCCCATTCCCTCTGTTTGCTGTGGGAAAGGTGAATGGGTGCTCAGACTCATCCAGGTTACAGAGCTGGAGAGGGCTGGAGAGATTTCTAGCCAGAGCCCTGACAGGGAGGAAATTGTGGATTGAAGAGGACATGGACACCAT----GAGAAGGGTCAATGAGGAATGAAATGCTTTGCCTCAGCATTGGAAGATCACTCA-GGGACACgcaccgtggctcatgactatcatcccagcactttgggagcctgaagccggggga-tcatttgaggccaggagttcaagaccatcctggacaacatagtga i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 97559122 2040 + 112192347 GGGAGTCAGGTGCCTGGGCAGGCGTCTCAGGCGACAGGCTCTAGGCCAGCTGCATGGGGCTGGCCCGGGGGTCGCCTCCACTGTGTGAGACCTTTCCAGGCTCCTCCTGGCTCGCACTGGCTCCTTCCCAGAACTGAAATCCAAGTGGGCCCAATCCCATTAACACACGAGTTGCAGGTGCTTACCCGTGCGCAGGGATATCAAATCTGTGAAGGGAAGGAGGCAAATGCCCTCAACTGGGAATGGCAGGCCACGAAGGGG-----GAGGCACTGAAGCGAGCCAGGGGCTTCTCTACCCCACACACAACCTGAGTAACCCAAACGTTCTACCAGCTGCAAAGCTGATCCTCTGACAGCAGCCAGCGGCAAGACATTGAACCACTTTATCAAAGTAGCTCTTAG---GGAGGACCAAACTGA--GGAAAAATCTGTTTTTCTCAAAGTCATTTGCTTCCGGGGCACAGTGTTTTTGCGGTCCGTCTTCTCTCTCCCCAGCGCCTTGGCCTGGTGTTAAAGTTCAGTCAAGTTCAGTCCATATCCATCAAATTGAAGGCAGCAGCTTCCTGGGGCCTCCTGCCTTAGACTCAGGTGTTTAGAAGAAAAGTATTTCAGGTAGTTAGTACTAAGTGGGACTCAAAGCGGAGAGCAAATAGACACC-GCCAGGGTTTACTGACCCTCCTCAAGCTCTCAAGTTGGTGGAGACTTCAAAGGTCCTTCAGGTGCGGGAGCATGGCCTGCCTCCTCGACTGCACGGTGACACCCGCATATCCTGTTCATGAAGATACGGCACAGCAAAGGCGCATCTAGAGACATGTTCCCAGCAGAGACCGCCAAGCCCACATATCCGGGTTTGCAGTTCACACAATCATAGGGTGTGTCTTTAGCAAGGTGTTTGCTATTTGTAACAATGGTCTCTGGGAAAGTTTATCAGATTTCATTCAACAGACCCATTAAAACTTCAAGTTCGATTCCTTGCTTGCCTTTCCTTTATTTGTACTCAGTTGAAACAAGGTGGAGCCCTGGAGCCCACTGTGCTGAATGGGCTTCCTGCTTCAGTAAGGGAGGGGATGTCCACACAGTAATGCCTGGAGCCCCTCAGGCACATCAGGTGCCACTCCCACCTGCTACTGCCCCTACTTCCTTTACAAGCAGAGAAACTGATGCCAGCCAAGGGAGGACTAAAGGAAGAATGAGGGGCATGCCAGACACTCCCCGGAAGGCTGAAGAATGGAGATCAGAAACCATGGGAACCAGGGTGGCAAGAACAGCTTGG------CCACCTCTTCACACTCCATTTTGAAATGAATGAACCCCCAACTCACTCCTCATATTTGCATTATTCCACTGGAGGCACAAATCCCAGCGGAGGGCCTAGTTGGCCCCCTTTATAGCAAATGCCCACCATTTGAATGTGGCCAAGGCTATG-AAAAAAAGGCTCTGCTAGGAAGGGCCCACTGGTTTCTGAACAGGGAGCACAGGGAACTTTGATTTACATCCCCACCAAGCCTTTACCCAG-------------------------------------------------TGAACAACAGGAATTCCCCGAATGGAACC--CAGGATGCCTACAGAGAAGGAGAGACGGTAAGGGGGCAGGCAAAACAAGACGCTGTCCACGAAACCACTCTGTCAGGGCAGTGGATGGAGCTGTCGACTCCTCAGAGGATGTCTACACCATTGTCAATCCTGGGCTCTTCAAGCTGGCAATGGCGGCGACCTTGTCTTGTACTCAGCAGGACTCTCTCGCCTCTTCTTCCTCAAGCCCATTCCCTCTGTTTGCTGTGGGAAAGGTGAATGGGCACTCAGATTCATCCAGGTTTCAGAGCTGGAGAGGGCTGGAGAAATTTCTAGCTGGAGCCCTGACAGGGAGGAAAC--TGGATTGAAGAGGACGTGGACACCAT----GAGAAGGGTCAATGAGGAATGAAATGCTTTGCCTCAGCACTGGAAGATCACTCAGGggacaggcaccgtggctcttgactatcatcccagcactttgggagccc-attttggggga-tcatttgaggccaggagttcaagaccatcctggacaacatagtga i rheMac3.chr15 C 0 C 0 s macFas5.chr15 98781518 2031 + 112612857 GGGAGTCAGGTGCCTGGGCAGGCGTCTCAGGCGACAGGCTCTAGGCCAGCTGCATGGGGCTGGCCCGGGGGTCGCCTCCACTGTGTGAGACCTTTCCAGGCTCCTCCTGGCTCGCACTGGCTCCTTCCCGGAACTGAAATCAAAGTGGGCCCAATCCCATTAACACACGAGTTGCAGGTGCTTACCCGTGCGCAGGGATATCAAATCTGTGAAGGGAAGGAGGCAAATGCCCTCAACTGGGAATGGCAGGCCACGAAGGGG-----GAGGCACTGAAGCGAGCCAGGGGCTTCTCTACCCCACACACAACCTGAGTAACCCAAACGTTCTACCAGCTGCAAAGCTGATCCTCTGACAGCAGCCAGTGGCAAGACATTGAACCACTTTATCAAAGTAGCTCTTAG---GGAGGACCAAACTGA--GGAAAAATCTGTTTTTCTCAAAGTCATTTGCTTCCGGGGCACAGTGTTTTTGCGGTCCGTCTTCTCTCTCCCCAGCGCCTTGGCCTGGTGT----------TCAAGTTCAGTCCATATCCATCAAATTGAAGGCAGCAGCTTCCTGGGGCCTCCTGCCTTAGACTCAGGTGTTTAGAAGAAAAGTATTTCAGGTAGTTAGTACTAAGTGGGACTCAAAGCGGAGAGCAAATAGACACC-GCCAGGGTTTACTGACCCTCCTCAAGCTCTCAAGTTGGTGGAGACTTCAAAGGTCCTTCAGGTGCGGGAGCATGGCCTGCCTCCTCGACTGCACGGTGACACCCGCATATCCTGTTCATGAAGATACGGCACAGCAAAGGCGCAGCTAGAGACGTGTTCCCAGCAGAGACCGCCAAGCCCACATATCCGGGTTTGCAGTTCACACAATCATAGGGTGTGTCTTTAGCAAGGTGTTTGCTATTTGTAACAATGGTCTCTGGGAAAGTTTATCAGATTTCATTCAACAGACCCATTAAAACTTCAAGTTCGATTCCTTGCTTGCCTTTCCTTTATTTGTACTCAGTTGAAACAAGGTGGAGCCCTGGAGCCCACTGTGCTGAATGGGCTTCCTGCTTCAGTAAGGGAGGGGATGTCCACACAGTAATGCCTGGAGCCCCTCGGGCACATCAGGTGCCACTCCCACCTGCTACTGCCCCTACTTCCTTTACAAGAAGAGAAACTGATGCCAGCCAAGGGAGGACTAAAGGAAGAATGAGGGGCATGCCAGACACTCCCCGGAAGGCTGAAGAATGGAGATCAGAAACCATGGGAACCAGGGCTGCAAGAACAGCTTGG------CCACCTCTTCACACTCCATTTTGAAATGAATGAACCCCCAACTCACTCCTCATATTTGCATTATTCCACTGGAGGCACAAATCCCAGCGGAGGGCCTAGTTGGCCCCCTTTATAGCAAATGCCCACCATTTGAATGTGGCCAAGGCTATG-AAAAAAAGGCTCTGCTAGGAAGGGCCCACTGGTTTCTGAACAGGGAGCACAGGGAACTTTGATTTACATCCCCACCAAGCCTTTACCCAG-------------------------------------------------TGAACAACAGGAATTCCCCGAATGGAACC--CAGGATGCCTACAGAGAAGGAGATACGGTAAGGGGGCAGGCAAAACAAGACGCTGTCCACGAAACCACTCTGTCAGGGCAGTGGATGGAGCTGTCGACTCCTCAGAGGATGTCTACACCATTGTCAATCCTGGGCTCTTCAAGCTGGCAATGGCGGCGACCTTGTCTTGTACTCAGCAGGACTCTCTCTCCTCTTCTTCCTCAAGCCCATTCCCTCTGTTTGCTGTGGGAAAGGTGAATGGGCACTCAGATTCATCCAGGTTTCAGAGCTGGAGAGGGCTGGAGAAATTTCTAGCTGGAGCCCTGACAGGGAGGAAAC--TGGATTGAAGAGGACGTGGACACCAT----GAGAAGGGTCAATGAGGAATGAAATGCTTTGCCTCAGCACTGGAAGATCACTCAGGggacaggcaccgtggctcttgactatcatcccagcactttgggagcccaaagctggggga-tcatttgaggtcaggagttcaagaccatcctggacaacatagtga i macFas5.chr15 C 0 C 0 s papAnu2.chr15 94493657 2029 + 107442819 GGGAGTCAGGTGCCTGGGCAGGCGTCTCAGGCGACAGGCTCTAGGTCAGCTGCATGGGGCTGGCCCGGGGGTCGCCTCCACTGTGTGAGACCTTTCCAGGCTCCTCGTGGCTCACACCGGGTCCTTCCCAGAACTGAAATAAAAGTGGGCCCAATCCCATTAACACACGAGTTGCAGGTGCTCACCCGTGCGCAGGGATATCAAATCTGTGAAGGGAAGGAGGCAAATGGCCTCAACTGGGAATGGCAGGCCACGAAGAGG-----GAGGCACTGAAGCGAGCCAGGGGCTTCTCTACCCCACACACAACCTGAGTAACCCAAACGTTCTACCAGCTGCAAAGCTGATCCTCTGACAGCAACCAGCGGCAAGACATTGAACCACTTTTTCAAAGTAGCTCTTAG---GGAGGACCAAAGTGA--GGAAAAATCCGTTTTTCTCAAAGTCATTCGCTTCCGGGGCACAGTGTTTTTGCAGTCCGTCTCCTCTCTCCCCAGCGCCTTGGCCTGGTGT----------TAAAGTTCAGTCCATATCCATCAAATTGAAGGCAGCAGCTTCCTGGGGCCTCCTGCCTTAGACTCAGGTGTTTAGACGAAAAGTATTTCAGGTAGTTAGTACTAAGTGGGACTCAAAGCAGAGAGCAAATAGACACC-TCCAGGGTGTACTGACCCTCCTCAAGCTCTCAAGTTGGTGGAGACTTCAAAGGTCCTTCAGGTGCGGTAGCATGGCCTGCCTCCTCGACTGCACGGTGACACCCGCATATCCTGTTCATGAAGATACGGCACAGGAAAGGTGCTTCTAGAGACATGTTCCCGGCAGAGACCGCCAAGCCCACATATCCGGGTTTGCAGTTCACACAATCATAGGGTGTGTCTTTAGCAAGGTGTTTGCTATTTGTAACGATGGTCTCTGGGAAAGTGTATCAGATTTCATTCAACAGACCCATTAAAACTTCAAGTTTGATTCCTTGCTTGCCTTTCCTTTATTTGTACTCAGTTGAAACAAGGTGGAGCCCTGGAGCCCACTGTGCTGAATGGGCTTCCTGCTTCAGTAAGGGAGGGGATGTCCACACAGTAATGTCTGGAGCCCCTCAGGCACATCAGGTGCCACTCCCACCTGCTACTGCCCCTACTTCCTTTACAAGCAGAGAAACTGATGCCAGCCAAGGGAGGACTAAAGGAAGAATGAGGGGCA-GCCAGACACTCCCCAGAAGACTGAAGAATGGAGATCAGAAACCATGGGAACCAGGGCGGCAAGAACAGCTTGG------CCACCTCTTCACACTCCGTTTTGAAATGAATGAGCCCCCAACTCACTCCTCATATTTGCATTAGTCCACTGGAGGCA-AAATCCCAGCGGAGGGCCTGGTTGGCCCCCTTTACAGCAAATGCCCACCATTTGAATGTGGCCAAGGCTATG-aaaaaaaGGCTCTGCTAGGAAGGGCCCACTGGTTTCTGAACAGGGAGCACAGGGAACTTtgatttacatccccaccaagcCTTTACCCAG-------------------------------------------------TGAACAACAGGAATTCCCCGAATGGAACC--CAGGATGCCTACAGAGAAGGAGATACGGTAAGGGGGCAGGCAAAACAAGACGCTGTCCACGAAACCACTCTGTCAGGGCAGTGGATGGAGCTGTCAACTCCTCAGAGGATGTCTACACCATCGTCAATCCTGGGCTCTTCAAGCTGGCAATGGCGGCGACCTTGTCTTGTACTCAGCAGGACTCTCTCGCCTCTTCTTCCTCAAGCCCATTCCCTCTGTTTGCTGTGGGAAAGGTGAATGGGCACTCAGATTCATCCAGGTTTCAGAGCTGGAGAGGGCTGGAGAGATTTCTAGCTGGAGCCCTGACAGGGAGGAAGC--TGGATTGAAGAGGACGTGGACACCAT----GAGAAGGGTCAATGAGGAATGAAATGCTTTGCCTCAGCACTGGAAGATCACTCAGGGGACAGGCACCGTGGCTCTTgactatcatcccagcactttgggagcccgaagctggggga-tcatttgaggccaggagttcaagaccatcctggacaacatagtga i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 98705679 2033 + 108555830 GGGAGTCAGGTGCCTGGGCAGGCGTCTCAGGCGACAGGCTCTAGGCCAGCTGCATGGGGCTGGCCCGGGGGTCGCCTCCACTGTGTGAGACCTTTCTAGGCTCCTCCTGGCTCGCACTGGGTCCTTCCCAGAACTGAAATCAAAGTGGGCCCAATCCCATTAACACACGAGTCGCAGGTGCTCACCCGTGCGCAGGGATATCAAATCTGTGAAGGGAAGGAGGCAAATGCCCTCAGCTGGGAATGGCAGGCCACGAAGGGG-----GAGGCACTGAAGTGAGCCAGGGGCTTCTCTACCCCACGCACAACCTGAGTAACCCGAACGTTCTACCAGCTGCGAAGCTGATCCTCTGACAGCAGCCAGCGGCAAGACATTGAACCGCTTTATCAAAGTAGCTCTTAG---GGAGGACCAAACTGA--GGAAAAATCCGTTTTTCTCAAAGTCATTTGCTACCGGGGCACAGTGTTTTTGCCGTCCGTCTCCTCTCGCCCCAGCGCCTTGGCCTGGTGG----------TGAAGTTCAGTCCATATCCATCAAATTGAAGGCAGCAGCTTCCTGGGGCCCCCTGCCTTAGACTCAGGTGTTTAGACGAAAAGTATTTCAGGTAGTTAGTACTAAGTGGGACTCAAAGCGGAGAGCATATAGACACC-CCCAGGGTTTCCTGACCCTCCTCAAGCTCTCAGGTTGGTGGAGACTTCAAAGGTCCTTCGGGTGCCGTAGCATGGCCTGCCTCCTCGACTGCACGGTGACACCCGCATATCCTGTTCATGAAGATACGGCACAGGAAAGGTGCATCTAGACACATGTTCCCGGCAGAGACCGCCAAGCCCACATATCCGGGTTTGCAGTTCACACAATCACAGCGTGTGTCTTCAGCAAGGTGTTTGCTATTTGTAACAATGGTCTCTGGGAAAGTTTATCAGATTTCATTCAACAGACCCATTAAAACTTCAAGTTGGATTCCTTGCTTGCCTTTTCTTTATTTGTACTCAGTTGAAACAAGATGGGGCCCTGGAGCCCACTGTGCTGAATGGGCTTCCTGCTTCAGTAAGGGAGGGGATGTCCACACAGTAATGCCTGGAGCCCCCCAGGCACATCAGGTGCCACTCCCACCTGCTACTGCCCCTAATTCCTTTACAAGCACAGAAACTGATGCCAGCCAAGTGAGGACTAAAGGAAGAATGAGGAGCACGCCAGACACTCCCCGGAAGGCTGAAGAATGGAGATCAGAAACCATGGGAACCAGGGCAGCAAGAACAGCTTGG------CCACCTCTTCACACTCCATTTTGAAATGAATGAACCCCCAACTCACTCCTCATATTTGCATTAGTCCACTGGAGGCACAAATCCCAGCGGAGGGCCTAGTTGGCCCCCTTTATAGCAAATGCCCACCATTTGAATGTGGCCAAGGCTATG-AGAAAAAGGCTCTGCTAGGAAGGGCCCACTGGTTTCTGAACAGGGAGCACAGGGAACTTTGATTTACATCCCCACCAAGCCTTTACCCAG-------------------------------------------------TGAACAACAGGAATTCCCTGAATGGAACCCACAGGATGCCTACAGAGAAGGAGATACGGTAAGGGGGCAGGCAAAACAAGACGCTGTCCACGAAACCACTCTATCAGGGCAGTGGATGGAGCTGTCGACTCCTCAGAGGATGTCTACACCATCGTCAATCCTGGGCTCTTCAAGCTGGCAATGGCGGCGACCTGGTCTTGTACTCAGCAGGACTCTCTCGCCTCTTCTTCCTCAAGCCCATTCCCTCTGTTTGCTGTGGGAAAGGTGAACGGGCGCTCAGATTCATCCAGGTTTCAGAGCTGGAGAGGGCTGGAGAGATTTCTAGCCGGAGTCCTGACAGGGAGGAAAC--TGGATTGAAGAGGACATGGACACTAT----GAGAAGGGTCAGTGAGGAATGAAATGCTTTGCCTCAGCACTGGAAGATCACTCAGGggacaggcactgtggcttatgactatcatcccagcactttgggagcccgaagctggggga-tcatttgaggccaggagttcaagaccatcctggacaacatagtga i chlSab2.chr12 C 0 C 0 s calJac3.chr1 77107961 2076 + 210400635 AGGAGTGAGGCACCTGGGCAGGCGTCTCAGGTGACAGGCTCCAGGCGAA------GGGGCTGGCCCAGGGGTCACCTGCACTGTGTGACACCTTTCCAGGCTCCTCCTGGCTCATACCAGGTCCTTCCCAGAGCTGAAATCAAGGTGGGCCCAATCCCATTTACACAGGAGCTGCAGGTACTTACCCCTACGCAG---------------GAAGGGAAGGAGACGAATGCCCTCAACTGGAAATGGTGGGCCACAAAGGGGGGGGAGGGGCGCTGAGATGGGCCAGGGGCTTCTCTACCCCACACTTAACCTGTATAACCCAAACATTCTACCAACTGCAAAGCTGATACTCTGACAGCAGCCAGCAGCAAGACGTTGAACCACTTTGTCAAATTAGTTCTTAGTACTACGAACCAAACAGAG-GAAAAAATCCATTTTTCTCAAAGTCATTTGCTTCTGGGGCACCGTGTTTCTGCAGTCCGCCTCCTGTCTCCCAAGCACCTCAG-CTGGTGT----------TAAAGTTCAGTCCATATCCATCAACTTGAAGGCAGCAGCTTCCTGGGGCCTCCTGCGTTAGACTTGGGTGTTTAGACAGAAAATATTTCATATAGTTAGTGCTAAGTGGGACTCAAAGCAGACAGCAAATAGACACCTCCCAGGGTTTACTGACCCTCCTTAAGCTCTCAGGTTGGTGGAGACTTCAAAGGCCTTTCGGATGCCATAGCATAGCCTGCCTCCTCGACTCCACCGTGACACCTGCATATCCTGTTCATGAAAATATTGCACGGGAAAGGTGAATCTAGAGACATGTTCCTGGCAGAGGTTG-CAAGCCTACATCTCCAGGTTTGCAGTTCACAAAATCATACAGTGTCTCTTTAGCAAAGTGTTTGCTATTTGTAACAATGATCTCTGGGAAAGTTTATCAGATTTCATTGAACTGATCCATTAAAACTTCAAGTTCAATACATTGCTTG-CTTTCCTTTATTTGTACTCAGTTGAAACAAGGCTGAGCCCTGGAGCCTACTGTGCTGAATGGGCTTCCTGCTTCAGTAAGGGAGAGGGTGCCCACACAGTAATGCCTGGAGCCCCTCAGGCACACCAGGTGGTACTCGCACCCCCTACTGCCCCTACCTCC-TTACAAGCACAGAAACTGACGCCAGTCAAGTTAGAAATAAAGGAAGAATTAGGACCATGCCAGACACTCCCCATAAAGCTGAACAATGGAGA-CACAAACGATGGGAACCAGGACAGCAAGAACAGCTCAGCCACCTCCACCTCCTCACACTCCATTTTCAAATGAATGAACCCCCAACTGACTTCTCACATTTGCATTAGCCCACCGGAGGCA-AAATCCCAGGGGAGGACCTGGTTGGCCACCTTTACAGCAAATGCCCACCATGTGAATGTGGTTGAGGCTGTGAAAAAAAAAGCTCTACTAGGACGGGCCCACTGGTTTCTGAACAGGGAGAAAAGGGAATTTTGATTTACATCCCCATCAAGACTTTACCCAGAAAAGAACAGGAATTCCaaaaaaataaaaaataaaaaaataaaaaaataaaaagaaCAGGAATTCCCCAGATGGAACC--CAGGCTGCCTACAGAGAAGGAGATGTGGTCATGGGACAGGCAAAATAAAACACTGTCCATGAAGCCACTCTATCAGGGCAGCGGACAGAGCTGCCGATCCCTTAGAGGATGTCTACACCATCGTCAACCCTGAGTCCTTCACGCTGACAATGGAGGGGACGGTGTGTTGTACTCAGCAGGACTCTCTCGCCTTCTCTTCCTCAAGCCCATTTCCTCTGTTTGCTGTGGGAAAGGTGAATGAGCACTTGGATTCATCCAGGTTTCAGAGCTGGAGAGAACTGGAGAGATTTCTAGTCAGAGCCCTGCCAGGGAGGAAGTTGTGGATTGAAGAGGACATGAACACTATAGGAGAGAAGGTTCAATGAGGAATGAAACGCTCTGCCTCGGCATTGGAAAATCACTCG-Gggctgggcgccgtggctcatgactatcatcccagcactttgggatctcaaagctgggagaggcatttgaggtcaggagttcaagaccatcctggacaacatggtga i calJac3.chr1 C 0 C 0 a score=133458.000000 s hg38.chr9_GL383542v1_alt 29937 62 + 60032 gaccctgtctctacaaaaaattaaaaaattatctgggcatggtagtgtgcacctgtagtccc s panTro4.chr9 86973559 62 + 137840987 gaccctgtctctacaaaaaattaaaaaattatctgggcatggtagtgcgcacctgtagtccc i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83605240 61 + 135191526 gaccctgtctctacaaaaaatt-aacaattatctcggcatggtagtgagcacctgtagtccc i ponAbe2.chr9 C 0 I 127 s nomLeu3.chr1a 76123266 62 - 122973662 gaccctgtctctacaaaaaattaaaaaattatccgggcatggtagtgcgcacctgtagtccc i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 97561162 61 + 112192347 caccctgtctctacaaaaaata-aaaaattatctgggcatggtagcacacacctgtagtccc i rheMac3.chr15 C 0 C 0 s macFas5.chr15 98783549 61 + 112612857 caccctgtctctacaaaaaata-aaaaattatctgggcatggtagcacacacctgtagtccc i macFas5.chr15 C 0 C 0 s papAnu2.chr15 94495686 61 + 107442819 caccctgtctctacaaaacata-aaaaattatctgggcatggtagcgcaaacctgtagtccc i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 98707712 61 + 108555830 caccctgtctctacaaaaaata-aaaaattacctgggcatggtagcgcacacctgtagtccc i chlSab2.chr12 C 0 C 0 e calJac3.chr1 77110037 0 + 210400635 C a score=559399.000000 s hg38.chr9_GL383542v1_alt 29999 239 + 60032 agctacttgggaggctggaggcaggatgaccacttgagcccaggagttcgaggctgctgtgagctgtgatcacaccgtggcactccagcctgggtgaaacagtgagactctgtctctggaag-aaaaaaaaaaatcactcagactgtagcctacagaccagaccacggggcccaacgtgagaaaagcagggagcccagtgaggaagctcctggtatcagagagagatgaggcggccaggt s panTro4.chr9 86973621 238 + 137840987 agctacttgggaggctggaggcaggatgactacttgagcccaggagttcgaggctgctgtgagctgtgatcacaccgtggcactccagcctgggtgaaacagtgagactctgtccctggaag--aaaaaaaaaatcactcagactgtagcctacagaccagaccacggggcccaacgtgagaaaagcagggagcccagtgaggaagctcctggtatcagagagagatgaggcggccaggg i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83605428 240 + 135191526 agctacttgggaggctggaggcaggatgaccacttgagcccaggagttcgaggctgctgtgagctgtgatcacatggtggcactccatcctgggtgaaacagtgagactctgtctctggaagaaaaaaaaaaaaTCACTCAAACTGTAGCCTACGGACCAGACCACGGGGACCAACATGAGAAAAGCAGGGAGCCCCGTGAGGAAGCTCCTGGCATCAGAGAGAGATGAGGCGGCCAGGG i ponAbe2.chr9 I 127 C 0 s nomLeu3.chr1a 76123328 239 - 122973662 agctacttgggaggctgaaggcaggatgaccacttgagcccaggagttcgaggctgctgtgagctgtgatcacgccatagcactccagcctgggtgaaacagtgagactctgtctctggaag-aaaaaaaaaaaTCACTCAGACTGTAGCCTACAGACCAGACCATGGGGCCCAATGTGAGAAAAGCAGGGAGCCCACTTAGGAACCTCCTGGCATCAGAGAGAGATGAGGCGGCCGGGG i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 97561223 237 + 112192347 agctactcgggaggctg-aggcaggatgagcacttgagcccaggagttcgaggctgctgtgagttgtgatcacgccatggcactccagcctgggtgaaacagtgagtctctgtctctggaag--aaaaaaaaaaTCACTCAGACTGTAGCCTACAGACCAGACCCTGGGGCCCAACGTGAGAAAAGCAGGGACCCCAGTGGGGAAGTTCCTGGCATCAGCGAGAGATGAGGCGGCTGGGG i rheMac3.chr15 C 0 C 0 s macFas5.chr15 98783610 238 + 112612857 agctactcgggaggctg-aggcaggatgagcacttgagcccaggagttcgaggctgctgtgagttgtgatcacaccatggcactccagcctgggtgaaacagtgagtctctgtctctggaag-aaaaaaaaaaaTCACTCAGACTGTAGCCTACAGACCAGACCCTGGGGCCCAATGTGAGAAAAGCAGGGACCCCAGTGGGGAAGTTCCTGGCATCAGCGAGAGATGAGGCGGCTGGGG i macFas5.chr15 C 0 C 0 s papAnu2.chr15 94495747 236 + 107442819 agctactcgggaggctg-aggcaggatgagcacttgagcccaggagttcgaggctgctgtgagttatgatcacaccatggcactccagcctgggtgaaacagtgagtctctgtctctggaag---aaaaaaaaatcactcagacTGTAGCCTACAGACCAGAGCCTGGGGCCCAACGTGAGAAAAGCAGGGACCCCAGTGGGGAAGTTCCTGGCATCAGCGAGAGATGAGGCGGCTGGGG i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 98707773 237 + 108555830 agctactcgggaggctg-aggcaggatgagcacttgagcccaggagttcgaggctgctgtgagttgtgatcacaccatggcactccagcctgggtgaaacagtgagactctgtctatggaag--aaaaaaaaaaTCACTCAGGCTGTAGCCTACAGACCAGACCCTGGGGCTCAACGTGAGAAAAGCAGGGACCCCAGTGGGGAAGTTCCTGGCATCAGCGAGAGATGAGGCGGCTGGGG i chlSab2.chr12 C 0 C 0 e calJac3.chr1 77110037 0 + 210400635 C a score=1555301.000000 s hg38.chr9_GL383542v1_alt 30238 547 + 60032 tgagggtgggagctggacattgggcaggcactcagtgtctcatatatcctgaaggagaggccatggggcttaggacaggctggatgtggtgtgctggtcacagaggagtcagggactgccccagagGGAAGCTATGTTAAAAGAACAGCCCCTCTGAGAACCTGGGCACCACGTTGCCTTGAGAGTTGTTTACACAATCTGGTGTCTCTTCAGCAGTTTTCGACAGAAATTTTTTGAACAGAAAATTTTATCCCATAGGACTAACAACTTGGACAATCAATTCATTTACTTATTCTTTCTCATATTTACATCTGATGT---TCCTTTCTTTTGCAGATTTTGTTAAGACTTGAATTAAATATGTAGTCAAGTTAAACTGTGCTCACTTAGAATGCAGCCAGTAATTTTTTAAGTTTAGCAAACAAACAAATGTTAGAAGGGAAAGACCAAATCTGAGGAAGAATGAGAGAAAGATC-----GGGGGAGGAATTTTGTT--AAAGGAAGAGGGAACTTACAAGTATTGTGATTCGAAAATATTAGCAATAATTGGAGT s panTro4.chr9 86973859 547 + 137840987 cgagggtgggagctggacattgggcaggcactcagtgtctcatatatcctgaaggagaggccatggggcttaggacaggctggatgtgctgtgctggtcacagaggagtcagggactgccccagagGGAAGCTATGTTAAAAGAACAGCCCCTCTGAGAACCTGGGCACCACGTTGCCTTGAGAGTTGTTTACACAACCTGGTGTCTCTTCAGCAGTTTTCAACAGAAATGTTTTGAACAGAAAATGTTATCCCATAGGACTAACAACTTGGACAATCAATTCATTTACTTATTCTTTCTCATATTTACATCTGATGT---TCCTTTCTTTTGCAGATTTTGTTAAGACTTGAATTAAATATGTAGTCAAGTTAAACTGTGCTCACTTAGAATGCAGCCAGTAATTTTTTAAGTTTAGCAAACAAACAAATGTTAGAAGGGAAAGACCAAATCTGAGGAAGAATGAGAGAAAGATC-----AGGGAAGGAACTTTGTT--AAAGAAAGAGGGAACTTACAAGTATTGTGATTCAAAAATATTAGCAATAATTGGAGT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83605668 551 + 135191526 TGAGGGTGGGAGCTGGACATTGGGCAGGCGCTCAGTGTCTCACATATCTTGAAGGAGAGGCCATGGGGCTCAGGACAGGCTGGATGTGG-GTGCTGGTCACAGAGGAGTCAGGGACTTCCCCGGAGGGAAGCTACGTTAAAAGAACAGCCCCTCTGAGAACCTGGGCACCATGTTGCCTTGAGAGTTGTTTACACAACCTGGTGTCTCTTCAGCAGTTTTCAACAGAAATTTTTTGAACAGAAAATTTTATCCCATAGGACTAACAACTTGGACAATCAATTCATTTACTTATTCTTTATCATATTTACATCTGATGTTCCTCCTTTCTTGTGCAGATTTTGTTAAGACTTGAATTAAATATGTAGTAAAATTAAACTGCGCTCACTTAGAATGCAGCCAGTAATTTTTTAAGTTTAGCAAACAAACAAATGTTAGAAGGGAAAGACCAAATCTGAGGAAGAATGAGAGAAAGATC----AGGGGGAGGAATTCTGTTA-AAAGAAAGAGGGAACTTACAAGTATTGTGATTCGAAAATATTAGCAATAATTGGAGT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76123567 539 - 122973662 TGAGGGTGGGAGCTGGACACTGGGCAGGCACTCAGT------------CTGAAGGAGAGGCCATGGGGCTTAGGACAGGCTGGATGTGGTGTGCTGGTCACAGAGGAGTCAGAGACTGCCCCGGAGGGAAGCTACGTTAAAAGAACAGCCCCTCTGAGAACCTGGGCACCACGTTGCCCTGAGAGTTGTTTACACAACCTGGTGTCTCTTCAGCAGTTTTCAACAGAAAT-TTTTGAACAGAAAATTTTATCCCATAAGACTAACAACTTGGACAATCAATTCATTTGCTTATTCTTTATCATATTTACATCTGATGTTCCTCCTTTCTTTTGCAGATTTTGTTAAGACTTGAATTAAATATGTAGTCAAGTTAAACTGTGCTCACTTAGAACGCAGCCAGTAATTTTTTAAGTTTAGCAAACAAACAAATGTTAGAAGGGAAAGACCAAATCTGAGGAAGAATGAGAGAAAGATC----ACGGGGAGGAATTTTGTTA-AAAGAAAGAGGGAACTTCCCAGTATTGTGATTCGAAAATATTAGCAATAATTGGAGT i nomLeu3.chr1a C 0 I 326 s rheMac3.chr15 97561460 543 + 112192347 TGC-GGTGGGAGCTGCACGTTGGGCAGGCGCTCAGTGGCTCGCAGATCTTGAAGGAGAGGCCATGGGGCTTAGGACAGACTGGATGTGGTGTGCTGGTCACACAGGAGTCAGGGACTACCCTGGAGGGAACCTATGTTAAAAGAACAGCCACTCTGAGAACCTGGGCACCACATTGCCTTGAGAGTTGTTTACACAACCTGGTGTCTCTTCAGCAGTTTTCAACAGAAAGTTTTTGAACAGAAAATTTTATCCCATAGGACTAACAACTTGGA----TAATTCATTTGCTTATTCTTTATCGTATTTACATCTGATGTTCCTCCTTTCTTTTGCAGATTTTGTTAAGACTTGAATTAAATACGTAGCCAAGTTAAACTGTGCTCAGTTAGAACGCAGCCAGTAATTTTTTAAGTTAAGCAAACAAACAAATGTTAGAAGGGAAAAACCAAACCTGAGGAAGAATGAGAGAAAGATC----AGGGGGAGAAATTTTTTTA-----AAAGAGGAAACTTACAGGGATTGTGATTCAAAAATATTAGCAATAATTGGAGT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 98783848 543 + 112612857 TGC-GGTGGGAGCTGCACGTTGGGCAGGCGCTCAATGGCTCGCAGATCTTGAAGGAGAGGCCATGGGGCTTAGGACAGACTGGATGTGGTGTGCTGGTCACACAGGAGTCAGGGACTACCCTGGAGGGAACCTATGTTAAAAGAACAGCCACTCTGAGAACCTGGGCACCACATTGCCTTGAGAGTTGTTTACACAACCTGGTGTCTCTTCAGCAGTTTTCAACAGAAAGTTTTTGAACAGAAAATTTTATCCCATAGGACTAACAACTTGGA----TAATTCATTTGCTTATTCTTTATCGTATTTACATCTGATGTTCCTCCTTTCTTTTGCAGATTTTGTTAAGACTTGAATTAAATACGTAGCCAAGTTAAACTGTGCTCAGTTAGAACGCAGCCAGTAATTTTTTAAGTTAAGCAAACAAACAAATGTTAGAAGGGAAAAACCAAACCTGAGGAAGAATGAGAGAAAGATC----AGGGGGAGAAATTTTTTTA-----AAAGAGGAAACTTACAGGGATTGTGATTCAAAAATATTAGCAATAATTGGAGT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 94495983 547 + 107442819 TGC-GGTGGGAGCTGCACATTGGGCAGGCGCTCAGTGGCTCGCAGATCTTGAAGGAGAGGCCATGGGGCTTAGGACAGACTGGATGTGGTGTGCTGGTCACACAGGAGTCAGGGACTACCCTGGAGGGAACCTACGTTAAAAGAACAGCCACTCTGAGAACCTGGGCACCACATTGCCTTGAGAGTTGTTTACACAACCTGGGGTCTCTTCAGCAGTTTTCAACAGAAAGTTTTTGAACAGAAAATTTTATCCCATAGGACTAACAACTTGGA----TAATTCATTCGCTTATTCTTTATCGTATTTACATCTGATGTTCCTCCTTTCTTTTGCAGATTTTGTTAAGACTTGAATTAAATACGTAGTCAAGTTAAACTGTGCTCAGTTAGAATGCAGCCAGTAATTTTTTAagttaagcaaacaaacaaatgttagAAGGGAAAAACCTAACCTGaggaagaatgagagaaagatc----agggggagaaattttttta-aaagaaagaggaaacgTACAGGGATTGTGATTCAAAAATATTAGCAATAATTGGAGT i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 98708010 545 + 108555830 TGCGGGTGGGAGCTGCACATTGGGCAGGCGCTCAGTGGCTCGCAGATCTTGAAGGAGAGGCCATGGGGCTTAGGACATACTGGATGTGGTGTGCTGGTCACAGAGGAGTCAGGGACTACCCTGGAGGGAACCTACGTTAAAAGAACAGCCACTCCGAGAACCTGGGCACCACATTGCCTTGACAGTTGTTTACACAACCTGGTGTCTCTTCAGCAGTTTTCAACAGGAAGTTTTTGAACAGAAAATTTTATCCCATAGGACTAACAACTTGGA----CAATTCATTTGCTTATTCTTTATCGTATTTACATCTGATGTCCCTCCTTTCTTTTGCAGATTTTGTTAAGACTTGAATTAAATGCGTAGTCAAGTTAAACTGTGCTCAGTTAGAACGCAGCCAGTGATTTTTTAAGTTTAGCAAACAAAC----GTTAGAAGGGAAAAACCAAACCTGAGGAAGAATGAGAGAAAGATC----AGGGGGAGGAATTTTTTTTAAAAGAAAGAGGGAACTTACAGGGATTGTGATTCAAAAATATTAGCCATAATTGGAGT i chlSab2.chr12 C 0 C 0 s calJac3.chr1 77110037 550 + 210400635 Tgatggtggaagctggacatgggacaagtgctcagtgtcttgtatatcttaaataagaggccatggggcttatgacaggttgaatgtggtgtgctgatcac--aggagtcagggaCTGCCCTGGAGGGAACCTATGTTAAAAAAACAGCCACTCTGAGAA-CTGGGCTCCGCACTGCCCTGAGAGTTGTTTACGTAATCTGGTGTCTCTTCAGCAGTTTTCAACAGAAATTTTTTGAACTGAAAATTTTATCCCATGGGACTAATAACTTGGACAATCAACTCATTTGCTTATTCTTTATCATATTTACATCTGATGTTCCTCCTTTCTTTTGCAGATTTTGTTAAGACTTGAATTAAATATGTAGTCAATTTAAACTGTGCCCAGTTAGAATGCAGCCAGTAATTTTTTAAGTTCAGCAAACAAA----TGTTAGAAGGGAGAGACTAAACCTGAGGAAGAATGAGAAAAAGACTGGGGAGGGGGTGGAATTTTTTTTAAAGGAAAGAGAAAACTTACAGGTATGGTGAGGCTAAAGTATTAGCAGTAATTAGAGT i calJac3.chr1 C 0 C 0 a score=2220006.000000 s hg38.chr9_GL383542v1_alt 30785 790 + 60032 AAAGAACTCAGtagtttaccttaacgttcactcttgggtttgtacattctgtgagtttggacgagtataaaatggcatgtagccaccattactgtatcatacagagtagttctgctgtcctaaaaatc----tatttatctctcccttccctgaa---ctggcaatcattgatcttccaacttcacagttttgccttttccagaatgtcatatagttggaa-tcatacagtctggg-tcttttctgatggggcttcttttacttagtacaatgc-agtcaagcttcctccacgtctg-ttcatggcttgatggatg--attttttttttttt-agcactgaataatattccattgcctggatattgcactgtttagccatttgcctttgaaggacaccttgattgcttatagtttggggcaattgtgaataaagttgcaataaacattcatgtgttgtttcttgtgtggatacaagttttcaactcctttgggtaaataccaagaagtacaattgctagatcatatggtaaaaggatgtttagttttgtaagaaactgcta---aactgt---------------------cttccaaagtagctatac----cattctgcactcctacaaacaatgaatgggagtttttgttgctccatatccttgtcagcatttggtgttgacagtgttctgggttttagccatcctgataggtatgAAAGGCTAGAATATTTTTAGTAATAGGACAGAACATTCCAATTGTAGGGTTAATAATAGTTGTTTTAATCTCTAGTATAGTTTTTATAATTAAATATCCTGCAATAGCTTTTA s panTro4.chr9 86974406 792 + 137840987 AAAGAACTCAGtagtttaccttaacgttcactcttgggtttgtacattctgtgagtttggacgagtataaaatggcatgtagccaccattactgtatcatacagagtagttctgctgtcctaaaaatc----tatttctctctcccttccctgaa---ctggcaatcattgatcttccaacttcacagttttgccttttccagaatgtcatatagttggaa-tcatacagtctggg-tcttttctgatggggcttcttttacttagtataatgc-attcaagcttcctccacatctg-ttcatggcttgatggatctttttttttttttttt-agcactgaataatattccattgcctggatattgcactgtttagccatttgcctttgaaggacaccttgattgcttatagtttggggcaattgtgaataaagttgcaataaacattcatgtgttgtttcttgtgtggatacaagttttcaactcctttgggtaaataccaagaagtacaattgctagatcatatggtaaaaggatgtttagttttgtaagaaactgcta---aactgt---------------------cttccaaagtagctatac----cattctgcattcctacaaataatgaatgggagtttttgttgctccatatccttgtcagcatttggtgttgacagtgttctgggttttagccatcctgataggtatgAAAGGCTAGATTATTTTTAGTAATAGGACAGAGCATTCCAATTGTAGGGTTAATAATAGTTGTTTTAATCTCTAGTATAGTTTTTATAATTAAATATCCTGCAATAGCTTTTA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83606219 790 + 135191526 AAAGTACTCAGtagtttaccttaatgttcactcttgggtttgtacattctgtgagtttggacgagtataaaatggcatgtagccaccgttactgtatcatacagagtagttctgctgtcctaaaaatc----tatttatctctcccttccctgaa---ctggcaatcattgatcttccaactccacagttttgcctcttccagaatgtcatatagttggaa-tcatacagtctggg-tcttttccgat-gggcttcttttacttagtataatgc-attcaagcttcctccacgtctg-ttcatggcttgatggatc--atttttttttttttaagcactgaataatattccattgcctggatattgcactgtttagccatttgcctttgaaggacaccttgattgcttacagtttggggcaattgtgaataaagttgcaataaacattcatgtgttgtttcttgtgtggatacaagttttcaactcctttgggtaaataccaagaagtacaattgctagatcatatggtaaaaggatgtttagttttgtaagaaactgcta---aaccgt---------------------cttctaaagtagctatac----cattctgcattcctacaagcaatgaatgggagtttttgttgctccatatccttgtcagcatttagtgttgacagtgttctgggttttagccatcctgataggtatgAAAGGCTAGATTATTTTTAGTGATAGGACACAGCATTCTAATTGTAGGGTTAATAATAGTTGTTTTAATCTCTAGTATAGTTTTTATAATTAAATATCCTGCAATAGCTTTTA i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76124432 786 - 122973662 aaaGAACTCGGtagtttaccttaacgttcactcttgggtttatatattctgtgagtttggacgagtataaaatggcatgtagccaccattactgtatcatacagagtagttctgctgtcctaaaaatc----tatttatctctcccttccctgaa---ctggcaatcattgatcttccaacttcacagttttgccttatccagaatgtcatatagtttgaattcctacagtttgggtttttttccgatgaggcttc-tttacttagcataaggcaattcaagcttcctccaagtctgtttcatgacttaagggatc--atttttttttttta-aacactgaataatattccattgcctggatattgcactgtttagccatttgcctttgaaggacaccttgattgcttacagtttggggcaattgtgaataaagttgcaataaacattcatgtgttgtttcttgtgtggatacaagtttttaactcctttgggtaaataccaagaagtacaattgctagatcgtat-gtaaaaggatgtttaattttgtaagaaactgcta---aactgt---------------------cttccaaagtagttatac----cattctgcattcctacaagcaatgaatgggagtttttgttgccccatatccttgtcagcatttggtgttgacagtgttctgggttttagccatcct-----GTATGAAAGGCTAGATTA-TTTTAGTAATAGGACAGAGCATTCTAATTGTAGGGTTAATAATAGTTGTCTTAATCTCTAGTATAGTTTTTATAATTAAATATCCTGCAATAGCTTTTA i nomLeu3.chr1a I 326 C 0 s rheMac3.chr15 97562003 786 + 112192347 AAAGAACTCAGtagtttaccttcaggttcactcttgggtttgtacattctgtgagtttggacgagtataaaatggcatgtagccactattactgtatcatacagagaagttccgctgtcctaaaaatcggtttatttatccctcccttctctgaactcctggcaatcattgatct---atcttcactgttttgccttttccagaacgtcatatagttggaa-tcatacagtctggg-tcttttctgac-gggcttcttttacttagtataatgc-atttaagcttcctccacgtctg-ttcatggcttggcggatc--atttttttttt-----gcactgaataatattccattgcctggatattgcactgtttaaccatctgcctttgaagaacaccttggttgcttacagtttggggcaattgtgaataaagttgcaacaaacattcatgtgttgtttcttgtgtggatacaagttttcaactcctttgggtaaataccaaaaagtacaattgctagatcatatggtaaaagaatgtttagttttgtaagaaactgcta---aactgt---------------------cttccaaagtagctgtac----cattctgcattcctacacgcaatgaatgggagtttttgttgcgccatatccttgtcagc-tgt-gtgttgacagtgttct-ggttttagccatcctgataggtatgAAAGGCTAGACTGTTTTTCGTAATAGGACACAGCATTCTAATTGTAGGGTTAATACTAGTTGTTTTAATCTCTAGTATAGTTTGTATAATTAAATATCCTGCAATCACTTCTA i rheMac3.chr15 C 0 C 0 s macFas5.chr15 98784391 786 + 112612857 AAAGAACTCAGtagtttaccttcaggttcactcttgggtttgtacattctgtgagtttggacgagtataaaatggcatgtagccactattactgtatcatacagagaagttccgctgtcctaaaaatcggtttatttatccctcccttctctgaactcctggcaatcattgatct---atcttcactgttttgccttttccagaacgtcatatagttggaa-tcatacagtctggg-tcttttccgac-gggcttcttttacttagtataatgc-atttaagcttcctccacgtctg-ttcatggcttggcggatc--atttttttttt-----gcactgaataatattccattgcctggatattgcactgtttaaccatctgcctttgaagaacaccttggttgcttacagtttggggcaattgtgaataaagttgcaacaaacattcatgtgttgtttcttgtgtggatacaagttttcaactcctttgggtaaataccaaaaagtacaattgctagatcatatggtaaaagaatgtttagttttgtaagaaactgcta---aactgt---------------------cttccaaagtagctgtac----cattctgcattcctacacgcaatgaatgggagtttttgttgcgccatatccttgtcagc-tgt-gtgttgacagtgttct-ggttttagccatcctgataggtatgAAAGGCTAGACTGTTTTTCGTAATAGGACACAGCATTCTAATTGTAGGGTTAATACTAGTTGTTTTAATCTCTAGTATAGTTTGTATAATTAAATATCCTGCAATCACTTCTA i macFas5.chr15 C 0 C 0 s papAnu2.chr15 94496530 787 + 107442819 AAAGAACTCAGTAGTTTACCTTCAGGTTCACTCTTGGGTTTGTACATTCTGTGAGTTTGGACGAGTATAAAATGGCATGTAGCCACTATTActgtatcatacagagtagttccGCTGTCctaaaaatctgtttatttatCCCTCCCTTCTCTGAACTCCTGGCAATCATTGATCT---ATCTTCactgttttgccttttccagaacgtcatttagttggaa-tcatacagtctgGG-TCTTTTCCGGt-gggcttcttttacttagtataatGC-ATTTAA-CTTCCTCCACGTCTG-TTCGTGGCTTGGCGGATC--Attttttttta-----gcactgaataatattccattgcctgGATATTGCACTGTTTAACCATCTGCCTTTGAAGAACACCTTGGTTGCTTACCATTTGGggcaattgtgaataaagttGCAACAAACATTCATGTGTTGTTTCTTGTGTGGATacaagttttcaactcctttgggtaaatgccAAAAAGTacaattgctagatcatatggtaaaagaatgtttagttttgtaagaaactgcta---aactgt---------------------cttccaaagtagctgtac----cattcTGCATTCCTACACGCAATGAATGGGAGTTTttgttgctccatatccttgtcAGCATGTGGTGTTGACAGTATTCT-GGTTTTAGCCATCCTGATAGGTATGAAAGGCTAGACTATTTTTAGTAATAGGATACAGCATTCTAATTGTAGGGTTAATACTAGTTGTTTTCATCTCTAGTATAGTTTGTATAATTAAATATCCTGCAATCACTTCTA i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 98708555 808 + 108555830 AAAAAACTCAGCagtttaccttcaggttcactcttgggtttgtacattctgtgagtttggacgagtataaaatggcatgtagccactattactgtatcatacagagaagttccgctgtcc------------tatttatccctcccttctctgaactcctggcaatcattgatct---atctccactgttttgccttttccagaacgtcacatagttggaa-tcatacagtctggg-tcttttccgat-gggcttcttttacttagtataatgc-atttaagcttcctccacgtctg-ttcatggcttggcggatc--attttttttttttttagcactgaataatattccattgcctggatgttgcactgtttaaccatctgcctttgaagaacaccttggttgcttacagtttggggcaattgtgaataaagttgcaacaaacattcatgtgttgtttcttgtgtggatacaagttttcaactcctttgggtaaataccaaaaagtacaattgctagatcatagaataaaagaatgtttagttttgtaagaaactgctaagtagctgtaccatttagttttgtaagaaacttccaaagtagctgtaccattcattctgctttcctacaagcaatgaatgggagtttttgttgctccatatccttgtcagc-tgt-gtgttgacagtgttctgggttttagccatcctgataggtatgAAAGTCTAGACTATTTTTAGTAATAGGACACAGCATTCTAATTGTAGGGTTAATACTAGTTGTTTTAATCTCTAGTATAGTTTGTATAATTAAATATCCTGCAATCACTTCTA i chlSab2.chr12 C 0 C 0 s calJac3.chr1 77110587 780 + 210400635 AAAGAACTTGGtagtttaccttcgggttcactcttgggtttgtacattctgtgagtttggac-----------agcaggtggccaccattactatgtcatgcagagtacttctgctgtcctaaagatctgtctatgtctccctcccttccctgaactcctggcaatcaatgatcttctatcttcacagttttgccttttccagaatgtcatatagttggag-ttgtacagtctggggtcttttcagat-gggattcttttacttagtattatgc-atttaagcttcttttacatctg-ttcgtggcttcatggatc--tttttttttta----agcactgaataatattccattgcctggatattgcactggttagccttttccctttgaaggacacgttggttgcttaccatttggggcaactgtgaacaaagttgcagtaaacattcatgtgttgcttcttgtgtggacacaagtttttaactcctttgggtaaataccaagaaaaacaattgctagatcatatggtaagaggaggtgtagttttgtaagaaactgtca---cactgt---------------------cttccaaagtagctgtac----cattctgcattcctaca-gcaaagaat-tgagctcttgttgctccatatccttgtcagcatttggtactgacagtgttctgggtgttggccatcctgataggtatgAGAGGCTAGATTATTTTTAACAAT-GGATGCAGCATTCTAATTGTAAGGTTAATATTAGTTGTTTTAATCTCTAGTATAGTTTTTATAATTAAATATCTTGCAATATCTTTTT i calJac3.chr1 C 0 C 0 a score=14274.000000 s hg38.chr9_GL383542v1_alt 31575 7 + 60032 GTTTAGA s panTro4.chr9 86975198 7 + 137840987 GTTTAGT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83607009 7 + 135191526 GTTTAGT i ponAbe2.chr9 C 0 C 0 s rheMac3.chr15 97562789 7 + 112192347 GTTTAGT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 98785177 7 + 112612857 GTTTAGT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 94497317 7 + 107442819 GTTTAGT i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 98709363 7 + 108555830 GTTTAGT i chlSab2.chr12 C 0 C 0 s calJac3.chr1 77111367 7 + 210400635 TTTTaga i calJac3.chr1 C 0 I 284 e nomLeu3.chr1a 76125218 0 - 122973662 C a score=1036396.000000 s hg38.chr9_GL383542v1_alt 31582 457 + 60032 GAACCACCCGTCATCATGAAATCATAATTCACTCATGCAAATTTGAGAGAT-AAAATCATCCTTTCACTAAAACCATCAGTACTCTTATTATATAAACATAGCATTACAAC-AAAAAATGCTGTTATGTCAAATCAAAGTAAATGCAATTTAAACTTCTTCTTAGCCCCATCTTTCCTTTAATACATGTATTGTTACACCCCATAGAGCAAAAGAAAAAAACCAGTGCACACAATATAGAGTAATAATGTTTAGTGATGTTGTAGGGAATTTAAAAGGTAAGAAAAGGAGGATGCTGTGATAATTCCTCAAGAGGTGATTGGggccagatgaggtagctcaatcctgtaatcccagcactttgggaggccaaggtgggtggatgacctgaggtcaggagttcaagactagcctggccagtatggtgaaactgcgtctccagtaaaaatacaaaaattag s panTro4.chr9 86975205 454 + 137840987 GAACCACCTGTCATCATGAAATCATAATTCACTCATGCAAATTTGAGAGAT-AAAGTCATCCTTTCACTAAAACAAACAGTACTC---TTATATAAATATAGCATTACAAC-AAAAAAGGCTGTTATGTCAAATCAAAGTAAATGCAATTTAAACTTCTTCTTAGCCCCATCTTTCCTTTAATACATGTATTGTTACACCCCATAAAGCAAAAGAAAAAAACCAGTGCACACAATATAGAGTAATAATGTTTAGTAATGTTGTAGGGAATTTAAAAAGTAAGAAAAGGAGGATGCTGTGATAATTCCTCAAGAGGTGATTGGggccagatgaggtggctcaatcctgtaatcccagcactttgggaggccaaggtgggtggatgacctgaggtcaggagttcaagactagcctggccagtatggtgaaactgcgtctccagtaaaaatacaaaaattag i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83607016 457 + 135191526 GAACCACCTGTCATCACGAAATCATAATTCACTCATGCAAATGTGAGAGAT-AAAATCATCCTTTCACTAAAACAATCAGTACTCTTATTATATAAATATAGCATTACAAC-AAAAAATGCTGTTATGTCAAATCAAAGTAAATGCAATTTAAACTTCTTTTTAACCCCATCTTTCCTTTAATACATGTATTGTTACACCCCATAAAGCAAAAGAAAAAAACCAGTGCACACAATATAGAGTAATAACGTTTAGTGATGTTGTAGGGAATTTAAAAGGTAGGAAAAGGAGGATGCTGTGATAGTTCCTCAAGAGGTGATTGGggccagatgaggtggctcaatcctgtaatcccagcactttgggaggccaaggtgggtggatgacctgaggtcaggagttcaagactagcctggccagtatggtgaaactgcgtctccagtaaaaatacaaaaattag i ponAbe2.chr9 C 0 C 0 s rheMac3.chr15 97562796 458 + 112192347 GAACCACCTGTCATCATGAAATCATAATTCACTCACGCAAATTTGAGAGATAAAAATCATCCTTTCACTAAAACAATCAGTACTCTTATTATACGAATACAGCATTACCAC-AAAAAATGCTATTATTTCCAGTCAAAGAAAACGCAATTTAAACTTCTTCTTAGCCCCATCTTTCCTTTAATGCACGTATTGTTAAACCTCATAAAGCAAAAGAAAAAAACCAGTGCACACAATATAGAGTAATAATTTTTAGTGATGTTGTAGGGAGTTTAAAAGGTAAGAAAAGGAGGATGCTGTGATAATTCCTCAAGAGGTGATTGGggccggatgaggtggctcatgcccataatcccagcaccttgggaggccaaggtgggtggattgcctgaggtcaggagttcaagactagcctggccaatatggtgaaactgtgtctccagtaaaaatacaaaaattag i rheMac3.chr15 C 0 I 198 s macFas5.chr15 98785184 458 + 112612857 GAACCACCTGTCATCATGAAATCATAATTCACTCACGCAAATTTGAGAGATAAAAATCATCCTTTCACTAAAACAATCAGTACTCTTATTATACGAATACAGCATTACCAC-AAAAAATGCTATTATTTCCAGTCAAAGAAAACGCAATTTAAACTTCTTCTTAGCCCCATCTTTCCTTTAATGCACGTATTGTTAAACCTCATAAAGCAAAAGAAAAAAACCAGTGCACACAATATAGAGTAATAATTTTTAGTGATGTTGTAGGGAGTTTAAAAGGTAAGAAAAGGAGGATGCTGTGATAATTCCTCAAGAGGTGATTGGggccggatgaggtggctcatgcccataatcccagcaccttgggaggccaaggtgggtggattgcctgaggtcaggagttcaagactagcctggccaatatggtgaaactgtgtctccagtaaaaatacaaaaattag i macFas5.chr15 C 0 C 0 s papAnu2.chr15 94497324 458 + 107442819 GAACCACCTGTCATCATGAAATCATAATTCACTCATGCAAATTTGAGAGATAAAAATCATCCTTTCACTAAAACAATCAGTACTCTTATTATACAAATATAGCATTACCAC-AAAAAATGCTATTATTTCCAGTCAAAGTAAACGCAATTTAAACTTCTTCTTAGCCTCATCTTTCCTTTAATGCACGTATTGTTAAACCtcataaagcaaaagaaaaaaaccagtgCACACAATATAGAGTAATAATTTTTAGTGATGTTGTAGGGAGTTTAAAAGGTAAGAAAAGGAGGATGCTGTGATAATTCCTCAAGAGGTGATTGGGGCCAGATGAGgcggctcatgcccgtaatcccagcaccttgagaggccaaggtgggtggattgcctgaggtcaggagttcaagactagcctggccaatatggtgaaactgtgtctccagtaaaaatacaaaaattag i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 98709370 458 + 108555830 GAACGACCTGTCATCATGAAATCATAATTCACTCATGCAAATTTGAGAGATAAAAATCATCCTTTCACTAAAACAATCAGTACTCTTATTATACAAATATAGCATTACCAC-AAAAAATGCTATTATTTCCAATCAAAGTAAACGCAATTTAAACTTCTTCTTAGCCCCATCTTTCCTTTAATGCACGTATTGTTAAACCTCATAAAGCAAAAGAAAAAAACCAGTGCACACAATATAGAGTAATAATTTTTAGTGATGTTGTAGGGAGTTTAAAAGGTAAGAAAAGGAGGATGCTGTGATAATTCCTCAAGAGGTGATTGGggccggatgaggtggctcatgcccataatcccagcaccttgggaggccaaggtgggtggattgcctgaggtcaggagttcaagactagcctggccaatatggtgaaactgtgtctccagtaaaaatacaaaaattag i chlSab2.chr12 C 0 C 0 s calJac3.chr1 77111658 424 + 210400635 GAACCACTTGTCAACATGAAGTCATAATTTACTCATGCAAATTTGAGAGAT-AAAATCATCCTTTCACT-AAACAAACAGTACTCTTATTATACAAATATAGCACTACAACAAAAAAATGCTATTATTTCAAATCAAAGTAAATGGAATTTAAACTTCTTCTTAGCCCCATCTTTCCTTTCATGCATGTCTTGTCATAC--CATAAAGCAAAAGAAAAAAACCAGCACACATAATATAGAGTAATAATTTTTAGTGATGTTGTAGGGAGTTTAAAAGGTAAGAAGAGGAGGTTGCTGTGATAATTCATCATAGG-------------------------------tgtaatcccaacactttgggaggccaagttgggtggatcacctgaggtcaagagttcaagaccagtctggtctttatagtaaaactccatctgcagtaaaaatacaaaaattag i calJac3.chr1 I 284 C 0 e nomLeu3.chr1a 76125218 0 - 122973662 C a score=254523.000000 s hg38.chr9_GL383542v1_alt 32039 185 + 60032 ctgggcgtggtggtgggcgccggtaatcccagctactcgggaggctgaggcaggagaatcacttgaaccggggaggtggaggttacagtgaacagagattgatccactgcactccagcctgggcaacagagtgaggctctgtctc-----aaaaaaaaaaaaaaaaaaaaaa---gaaaga--------------------aaGAAAGAAAAG s panTro4.chr9 86975659 181 + 137840987 ctgggcgtggtggtgggcgcctgtaatcccagctactcgggaggctgaggcaggagaatcacttgaaccggggaggtggaggttacagtgaacagagattgatccactgcactccagcctgggcaacagagtgaggctctgtctc---------aaaaaaaaaaaaaaaaaa---gaaaga--------------------aagaaaGAAAAG i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83607473 175 + 135191526 ctgggcatggtggtgggcgcctgtaatcccagctacttgggaggctgaggcaggagaatcacttgaaccggggaggtggaggttacagtgaacagagactgagctactgcactccagcctgggtaacagagtgaggctctatctc------------aaaaaaaaaaaaaaa---gaaaga-----------------------aaagaaaaG i ponAbe2.chr9 C 0 C 0 s macFas5.chr15 98785642 194 + 112612857 ctggacatggtggtgggcacctgtaatccctgctactcgggaggctgaggcaggagaatcacttgaaccggggaggtggaggctacagtaagcagagattgagccactgcactccagcctgggcaacagagtgaggccctgtctc--------------aaaaaaaaaaaaa---aaaTTAATTTAATTTAATTTAATTTAAAAAAAGAAA-- i macFas5.chr15 C 0 C 0 s papAnu2.chr15 94497782 208 + 107442819 ctggacatggtggtgggcacctgtaatccccgctactcgggaggctgaggcaggagaatcacttgaaccagggaggtggaggttacagtaagcagagagtgagccactgcactccagcctgggcaacagagtgaggccctgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaa---aaaaaaatttaatttaatttaatttaaaaaaagaaa-- i papAnu2.chr15 C 0 I 4 s chlSab2.chr12 98709828 206 + 108555830 ctggacatggtggtgggcacctgtaatccccactactcgggaggctgaggcaggagaatcacttgcactggggaggtggaggttacagtaagcagagattgagccactgcactccagcctgggcaacagagtgaggccctgtctc-----caaaaaaaaaaaaaaaaaaaaatttaatttaatttaatttaatttaatttaaAAAAAGAAA-- i chlSab2.chr12 C 0 I 1 s calJac3.chr1 77112082 156 + 210400635 ccaggcatgatggt-ggcacctgtaatcccaaatactcaagagactggggcaggagaatcacttgaattaggtaggtggaggttgcagtgagccaagatgaatccactgcactccaacctgggcaacagagtgagacaccctttc--------------aaaaaaaaaaaa------------------------------------------ i calJac3.chr1 C 0 C 0 e rheMac3.chr15 97563254 198 + 112192347 I e nomLeu3.chr1a 76125218 0 - 122973662 C a score=1691846.000000 s hg38.chr9_GL383542v1_alt 32224 769 + 60032 AAAGAGGTGATTGGGAGCTCTAAGAAGAAACTCCTTTGACTCCGATTTTGGGGAAGGAAAAAGTATTAGTTATCTCTGAGATGAATAGCTGAGGTCATTATTGATCCATTT-GATGGGGCTAAGTGGCATCTTGGAAAAAAAGACCCTCAAGCAGAAAACAGAAAACCTCTGTAACTCTTCGGGCTTCAG-TTTCCTTTACa-----aaaaaaaaaaaaaaaaaaatcaaacaa--caaaaaa-CAGAATTGAAATTGATGGTACACATTATTTTTGCTTCTCTGTTATATAAAAACTTAATAATTTCTTAACTAAAACTAGGCATGGCACTATTATGGTACTCAAGGAAATTAACAATGGGCAGTTCAGCTTCTGGCACTGGTGGAAAATAAGCTAACACGGGTGTGAGAAAGGCAGATGCAGGAGCCCCGAGCTCACCTACACGCTAGGGACCAGTGGGTAAAAACTGGAGGCACCTCAACAAGCCCCACACAGCCCCTGTGAGCTTCCTGTGGGGCTTCAGCCATCCAGGGGCTCCTAAAAAGTAAAAGTTCTAGTATTTGTACATGGTTATTTCCAAAATAACGTGGATGCTAACAATTTTTTGAGGAACATTTA---------CTTTCACAGAATTACAACTCCATCTTGCTGTTGCCAATCATGTTGGGGA---------AAATACAGTGTTTTTCTTAGAAAACCAGGCAATCTATGTGGAAA-CTCTCATCCCATGGTGATCTGCCTGTACAGTCTTTGTGAGATCACTTCAATACAAGGAATGTAAAAT s panTro4.chr9 86975840 772 + 137840987 AAAGAGGTGATTGGGAGCTCTAAGAAGAAACTCCTTCGACTCCGATTTTGGGGAAGGAAAGAGTATTAGTTATCTCTGAGTTGAATAGCTGAGGTCATTATTGATCCATTT-GATGGGGCTAAGTGGCATCTTGGAAAAAAAGCCCCTCAAGCAGAAAATAGAAAACCTCTGTAACTCTTCGGGCTTCAG-TTTCCTTTacac--acacacacacacacacaAAAAGCAAACAA--CAAAAAA-CAGAATTGAAATTGATGGTACACATTATTTTTGCTTCTCTGTTATATAAAAACTTAATAATTTCTTAACTAAAACTAGGCATGGCACTATTACGGTACTCAAGGAAATTAACAATGGGCAGTTCAGCTTCTGGCACTGGTGGAAAATAAGCTAACACGGGTGTGAGAAAGGCAGATGCAGGAGCCCTGAGCTCACCTACACGCTAGGGACCAGTGGGTAAAAACTGGAGGCACCTCGACAAGCCCCACACAGCCCCTGTGAGCTTCCTGTGGGGCTTCAGCCATCCAGGGGCTCCTAAAAAGTAAAAGTTCTAGTATTTGTACATGGTTATTTCCAAGATAATGTGGATGCTAACAATTTTTTGAGGAACATTTA---------CTTTCACAGAATTACAACTCCATCTTGCTGTTGCCAATCATGTTGGGGA---------AAATACAGTGTTTTTCTTAGAAAACCAGGCAATCTATGTGGAAA-CTCTCATCCCATGGTGATCTGCCTATACAGTCTTTGTGAGATCACTTCAATACAAGGAATGtaaaat i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83607648 761 + 135191526 AAAGAGGTGATTGGGAGCTCTAAGAATAAACTCCTTTGACTCCCATTTTGGGGAAGGAAAAAGTATTAGTTATCTCTGAGATGAATAGCTGAGGTCATTATTGATCCATTT-GATGGGGCTAAGTGGCATCTTGG-AAAAAAGACCCTCAAGCAGAAAACAGAAAACCTCTGTAACTCTTTGGGCTTCAG-TTTCCTTTACA-----------AAAAAAAAAAAAAGCAAACAA---ACAAAA-CAGAATTGAAATTGATGGTACACATTATTTTTGCTTCTCTGTTATATAAAAACTTAATAATTTCTTATCTAAAACTAGGCATGGCACTATTATAGTACTCAAGAAAATTAACAATGGGCAGTTCGGCTTCTGGCACTGGTGGAAAATAAGCTAACACGGGTGTGAGAAAGGCAGATGCAAGAGACCTGAGCTCATCTACACGCTAGGGACCAGTGGGTAAAAACTGGAGGCGCCTCAACAAGCCCCACACAGCCCCTGTGAGCTTGCTGTAGGGCTTCAGCCATCCAGGGGCTCCTAAAAAGTAAAAGTTCTAGTATTTTTACGTGGTTATTTCCAAGATAATGTGGATGCTAACAATTTTTTGAGGAACATTTA---------CTTTCATAGAATTACAACTCCATCTTGCTATTGCCAATCATGTTGGGGA---------AAATACAGTGTTTTTCTTAGAAAACCAGGCAATCTACGTGGAAA-CTCTCAACCCATGGTGATCTGCTTATACAGTCTTTGTGAGATCACTTCAACACAAGGAATGtaaaat i ponAbe2.chr9 C 0 C 0 s rheMac3.chr15 97563452 769 + 112192347 AAAGAGTTGATTGGGAGCTCTAAGAAGAAACTCCTTTGACTCCGATTTTGGCGAAGGAAAAAGTATTAGTTATCTCTGAGATGAATAGCTGAGGTCATTATTGATCCATCT-GATGGGGCTAAGTGGCCTCTTGG---AAAAGACCCTCGAGCAGAAAACAGAAAACCTCTGTAACTCTTCGGGCTTCCG-TTTCCTTAACGG----aaaaaaaaaaacaaaaaacaaaaaaaa--aaaaaaaCCAGAATTGAAATTGATCATACACATTATTTTTGCTTCTCTGTTATATAAAAACTCAATAATTTCTTATCTAAAACTAGGCATGGCACTATTATGGTACTCAAGGAAATTAACAATGGGCGGTTCTGCTTCCAGCACTGGTGGAAAATAAGCTAACACAGGTGTCAGGAAGGCAGATGCAGGAGCCTTGAGCTCACCTACACGCTAGGGACCAGTGGGTAGAAACTGGAGGCTCCTGGACAAGCCCCACACAGCCCCTGTGAGCTTGCTGTGGGGCTTCAGCCATCCAGGGGCTCCTAAAAAGTAAAAGTCCCAGTATTTTTACATGGTTATTTCCAAGAGAATGTGGATGCTGACAATTTTTTGAGGAACATTTA---------CTTTCACAGAATTACAACTCCATCTTGCGATTGCCAATCATGTTGAGGA---------AAATACAGTGTTTTTCTTAGAAAATCAGGCAATCTGTGTGGAAACCCCTCATCCCATGGTGATCTGCTTATACAGTCTTTGTGAGATCACTTCAATACAAGGAATGtaaaat i rheMac3.chr15 I 198 C 0 s macFas5.chr15 98785836 773 + 112612857 AAAGAGGTGATTGGGAGCTCTAAGAAGAAACTCCTTTGACTCCGATTTTGGCGAAGGAAAAAGTATTAGTTATCTCTGAGATGAATAGCTGAGGTCATTATTGATCCATCT-GATGGGGCTAAGTGGCCTCTTGG---AAAAGACCCTCGAGCAGAAAACAGAAAACCTCTGTAACTCTTTGGGCTTCCG-TTTCCTTAACGGaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa--aaaaaaaCCAGAATTGAAATTGATCATACACATTATTTTTGCTTCTCTGTTATATAAAAACTCAATAATTTCTTATCTAAAACTAGGCATGGCACTATTATGGTACTCAAGGAAATTAACAATGGGCGGTTCTGCTTCCAGCACTGGTGGAAAATAAGCTAACACAGGTGTCAGGAAGGCAGATGCAGGAGCCTTGAGCTCACCTACACGCTAGGGACCAGTGGGTAGAAACTGGAGGCTCCTGGACAAGCCCCACACAGCCCCTGTGAGCTTGCTGTGGGGCTTCAGCCATCCAGGGGCTCCTAAAAAGTAAAAGTCCCAGTATTTTTACATGGTTATTTCCAAGAGAATGTGGATGCTGACAATTTTTTGAGGAACATTTA---------CTTTCACAGAATTACAACTCCATCTTGCGATTGCCAATCATGTTGAGGA---------AAATACAGTGTTTTTCTTAGAAAATCAGGCAATCTGTGTGGAAACCCCTCATCCCATGGTGATCTGCTTATACAGTCTTTGTGAGATCACTTCAATACAAGGAATGTAAAAT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 94497994 765 + 107442819 aaagaggtgatTGGGAGCTCTAAGAAGAAACTCCTTTGACTCCGATTTTGGCGAAGGAAAAAGTATTAGTTATCTCTGAGATGAATAGCTGAGGTCATTATTGATCCATTT-GATGGGGCTAAGTGGCCTCTTGG---AAAAGACCCTcaagcagaaaacagaaaacctctGTAACTCTACGGGGTTCCG-TTtccttaacag----aaaaaaaaaaaaaaaaaaagcaaacaa--aaaa----cagaattgaaattgatcatacacattatttttgcttctctgttATATAAAAACTCAATAATTTCTTATCCAAAACTAGGCATGGCACTATTATGGTACTCAAGGAAATTAACAATGGGCGGTTCTGCTTCCAGCACTGGTGGAAAATAAGCTAACACGGGTGTCAGGAAGGCAGATGCAGGAGCCTTGAGCTCACCTACACGCTAGGAACCAGTGGGTAGAAACTGGAGGCTCCTGGACAAGCCCCATACGGCCCCTGTGAGCTTGCTGTGGGGCTTCAGCCATCCAGGGGCTCCTAAAAAGTAAAAGTCCCAGTATTTTTACATGGTTATTTCCAAGAGAATGTGGATGCTGACAATTTTTGGAGGAACATTTA---------ctttcacagaattacaactcCATCTTGCTATTGCCAATCATGTTGAGGA---------AAATACAGTGTTTTTCTTAGAAAATCAGGCAATCTGTGTGGAAACCCCTCATCCCATGGTGATCTGCTTATACAGTCTTTGTGAGATCACTTCAATACaaggaatgtaaaat i papAnu2.chr15 I 4 C 0 s chlSab2.chr12 98710035 763 + 108555830 AAAAAGGTGATTGGGAGCTCTAAGAAGAAACTCCTTTGACTCCGATTTTGGCGAAGGAAAAAGTATTAGTTATCTCTGAGATGAATAGCTGAGGTCATTACTGATCTATTT-GATGGGCCTAAGTGGCCTCTTGG---AAAAGACCCTCGAGCAGAAAACAGAAAACCTCTGTAACTCTTTGGGCTTCCG-TTTCCTTAACGG--GGGaaaaaaaaaaaaaaaaaagcaaacaa--aaaa----CAGAATTGAAATTGAT----CACATTATTGTTGCTTCTCTGTTATATAAAAACTCAATAATTTCTTGTCTAAAACTAGGCATGGCACTATTATGGTACTCAAGGAAATTACCAATGAGCAGTTCTGCTTCCGACACTGGTGGAAAATAAGCTAACATGGGTGTCAGGAAGGCAGATGCAGGGGCCTTGAGCTCACCTACACGCTAGGAACCAGTGGGTAGAAGCTGGAGGCTCCTGGACAAGCCCCACACAGCCCCTGTGAGCTTGCTGTGGGGCTTCAGCCATCCAGGGGCTCCTAAAAAGTAAAAGTCCCAGTATTTTTACATGGTTATTTCCAAGAGAATGTGGATGCTGACAATTTTTTGAGGAACATTTA---------CTTTCACAGAATTACAACTCCATCTTGCTATTGCCAATCATGTTGAGGA---------AAATACAGTGTTTTTCTTAGAAAATCAGGCAATCTGTGTGGAAACCCCTCATCCTGTGGTGATCTGCTTATACAGTCTTTGTGAGATCACTTCAATACAAGGAATGTAAAAT i chlSab2.chr12 I 1 C 0 s calJac3.chr1 77112238 782 + 210400635 -----GGTGATTGGGAGCTCTAAGGAGAAACTCCTTTGACTCTGATTTTGGGAAAGGGAAAAGTACCACTTATCTCTGAGATGAATGGCTGAGATTGTCATTGATCCATCTGGGTGGGGCTAAGTGGCATATTGG---AAAAGGCCCTAGGGCAGGAAACAGAAAACCTCTGTAACCCTCTGGGCTTCAGTTTTCCTTTACA-----AAACAACAACAACAACAAACCCAACAACCAAAAAAA-TAGAATTGAAATTGACGGTACCTGTTATTTTTGCTTCTCTGTTACATAAAAACTTAATAATTTCTTATCTAAAACTAGGCATGGAACAATTATGGTACTCAAGAAAATTAAAAATGGGCAGTTCGGTTTCTGGCACTGGTGGAAAATAACCTGACATGGGTGTGAGAAAGGTGGATGCAGGAGCCCTGAGTTTACCTACACGCTGGGGACCGGTGGGTAGAAACTAGAGGCCCCTCAAGAAGCCCCACGCAGCCCCTATGCACTTGCTGTGCAGCTTCAGCCATCCAGGGGCTCCTAAAAAGTAGAAATTCTAGTACTTTTAAGTGGTTATTTCTGAGATAACCT-GATGCCAACAACTTTTTGAGGAACATTTACATGTAATTCCTTCATGGAATTACAACTCCATCCAGCTATTGCCAATCAGGTTTGGGAAACTGTGGCAAATATGATCTTTTTCTTAGAAAACCAGGCGATCTACACAGAAA-CTCTTATCCCAAGGCAATCTGCTTACAGAGTCTTTGCGAGGTCACTTCAATATAAGGAATGTAAAAT i calJac3.chr1 C 0 C 0 e nomLeu3.chr1a 76125218 0 - 122973662 C a score=552543.000000 s hg38.chr9_GL383542v1_alt 32993 314 + 60032 AAAAAATTAAAATAAAAAAATTTAATG-ATTggccaggcatggtggctcatgcctgtaatcccagcactttgggagaccaaggcgggcggatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaaccctgtctctgctaaaaatacaaaaaattagccgggcgtggtggcgggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggtgtgaacctgggaggcggagcttgcagtgagccgagatggcaccactgcactccagcctgggcgacagagcgagactccatctc-------aaa s panTro4.chr9 86976612 322 + 137840987 aaaaaattaaaataaaaaaatttaatGAATTggccaggcatggtggctcacgcctgtaatcccagcactttgggagaccgaggcgggcggatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaaccctgtctctgctaaaaatataaaaaattagccaggcgtggtggcgggcacttgtagtcccagctactcgggaggctgaggcagaagaatggtgtgaacctgggaggcggagcttgcagtgagccgagatggcaccactgcactccagcctgggcgacagagcgagactccatctcaaaaaaaaaa i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83608409 315 + 135191526 aaaaaattaaaataaaaaaatttaatgaattggccaggcatggtggctcacgcctgtaatcccagcactttgggagaccaaggtgggcggatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaacctcgtctctactaaaaatacaaaaaattagccgggcgtggtggcgggcacttgtagtcccagctactcaagaggctgaggcaggagaatggcgtgaacctggaaggcggagcttgcagtgagccgagatcgcgccactgcactccagcctgggcgacagagcgagactccgtctc-------aaa i ponAbe2.chr9 C 0 C 0 s rheMac3.chr15 97564221 315 + 112192347 aaaaaattaaaataaagaaatttaatGAATTggctgggcgtggtggctcacgcctgtaatcccagcactttgggaggccgaggcaggtagatcacgaggttaggagatccagaccatcctggctaacacggtgaaaccccgtctctactaaaaatacaaaatattagccgggcgtggtggcaggcacctgtagcccctgctacttgggaggctgaggcaggagaatggcgtgaacctgggaagcggagcttgcagtgagctgcaattgtgccgctgcgctccagcctgggcgacagagcaagactccatctc-------caa i rheMac3.chr15 C 0 C 0 s macFas5.chr15 98786609 315 + 112612857 AAAAAATTAAAATAAAGAAATTTAATGAATTggctgggcgtggtggctcacgcctgtaatcccagcactttgggaggccgaggcaggtagatcacgaggttaggagatccagaccatcctggctaacacggtgaaaccccgtctctactaaaaatacaaaatattagccgggcgtggtggcgggcacctgtagtccctgctacttgggaggctgaggcaggagaatggcgtgaacctgggaagcggagcttgcagtgagctgcaattgtgccactgcgctccagcctgggcgacagagcaagactccatctc-------caa i macFas5.chr15 C 0 C 0 s papAnu2.chr15 94498759 315 + 107442819 aaaaaattaaaataaagaaatttaatgaattggccgggcgtggtagctcacgcctataatcccagcactttgggaggccgaggcaggtagatcacgaggtcaggagatccagaccatcctggctaacacggtgaaaccccgtctctactaaaaatacaaaatattagccgggcgtggtggcgggcacctgtagtccctgctacttgggaggctgaggcaggagaatggcgtgaccctgggaagcagagcttgcagtgagctgcaattgtgccactgcgctccagcctgggtgacagagcaagactccatctc-------caa i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 98710798 315 + 108555830 AAAAAATTAAAATAAAGCAATTTAATGAATTggccgggcgtggtggctcacgcctgtaatcccagcactttgggaggccgaggcaggtagatcacgaggtcaagagatccagaccatcctggctgacacggtgaaaccccgtctctactaaaaatacaaaatattagccgggcatggtggcaggcacctgtagtccctgctacttgggaggctgaggcaggagaatggtgtggacctgggaagcggagcttgcagtgagctgcgatcacgccactgtactccagcctgggcgacagattgaagtcccgtctc-------aaa i chlSab2.chr12 C 0 C 0 e calJac3.chr1 77113020 0 + 210400635 C e nomLeu3.chr1a 76125218 0 - 122973662 C a score=2730.000000 s hg38.chr9_GL383542v1_alt 33307 2 + 60032 aa s panTro4.chr9 86976934 2 + 137840987 aa i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83608724 2 + 135191526 aa i ponAbe2.chr9 C 0 C 0 s rheMac3.chr15 97564536 2 + 112192347 aa i rheMac3.chr15 C 0 C 0 s macFas5.chr15 98786924 2 + 112612857 aa i macFas5.chr15 C 0 C 0 s chlSab2.chr12 98711113 2 + 108555830 aa i chlSab2.chr12 C 0 C 0 e calJac3.chr1 77113020 0 + 210400635 C e papAnu2.chr15 94499074 0 + 107442819 C e nomLeu3.chr1a 76125218 0 - 122973662 C a score=910.000000 s hg38.chr9_GL383542v1_alt 33309 1 + 60032 a s panTro4.chr9 86976936 1 + 137840987 a i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83608726 1 + 135191526 a i ponAbe2.chr9 C 0 C 0 s macFas5.chr15 98786926 1 + 112612857 a i macFas5.chr15 C 0 C 0 s chlSab2.chr12 98711115 1 + 108555830 a i chlSab2.chr12 C 0 C 0 e calJac3.chr1 77113020 0 + 210400635 C e papAnu2.chr15 94499074 0 + 107442819 C e rheMac3.chr15 97564538 0 + 112192347 C e nomLeu3.chr1a 76125218 0 - 122973662 C a score=1092.000000 s hg38.chr9_GL383542v1_alt 33310 2 + 60032 aa s panTro4.chr9 86976937 2 + 137840987 aa i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83608727 2 + 135191526 aa i ponAbe2.chr9 C 0 C 0 s chlSab2.chr12 98711116 2 + 108555830 aa i chlSab2.chr12 C 0 C 0 e calJac3.chr1 77113020 0 + 210400635 C e papAnu2.chr15 94499074 0 + 107442819 C e macFas5.chr15 98786927 0 + 112612857 C e rheMac3.chr15 97564538 0 + 112192347 C e nomLeu3.chr1a 76125218 0 - 122973662 C a score=1820.000000 s hg38.chr9_GL383542v1_alt 33312 2 + 60032 aa s panTro4.chr9 86976939 2 + 137840987 aa i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83608729 2 + 135191526 aa i ponAbe2.chr9 C 0 C 0 s chlSab2.chr12 98711118 2 + 108555830 aa i chlSab2.chr12 C 0 C 0 s calJac3.chr1 77113020 2 + 210400635 AA i calJac3.chr1 C 0 C 0 e papAnu2.chr15 94499074 0 + 107442819 C e macFas5.chr15 98786927 0 + 112612857 C e rheMac3.chr15 97564538 0 + 112192347 C e nomLeu3.chr1a 76125218 0 - 122973662 C a score=204595.000000 s hg38.chr9_GL383542v1_alt 33314 413 + 60032 aa-------aaaaaTTAATGAATTATATTATATCCCTCATCCCCCCAACCCCTATTAAAGATCACTGGAATTATTTTGAAATGTTTTCACACTCACGTAACATACTTTTGACAAAGGAATTTTATGGTATTTGAACTAGATGAATACTTTTGGTCAATATCAATGAGGGTGTGTTTATCCAATATGAGCAGCGGCATAGCAGGACACCAAACGCTGCCTGCATCAACGAAGGCCACACGCAGTTCACCTCTGTAACTGCAATCGATTTCTCAGAGAAGTAAGTCAAGACGAAATCATTCACTAAAGCCACATATTGAGTTTAAAAAGAAAAACCTAGCAGCTTTCTAAAACTGAAGCTTCAACTTCTAAAAATGTTAATTTTACCTACTAAAAACCCCTTACCTTTTAGAGCTTAAGGTT s panTro4.chr9 86976941 413 + 137840987 aa-------aaaaaTTAATGAATTATATTATATCCCTCATCCCCCCAACCCCTATTAAAGATCACTGGAATTATTTTGAAATGTTTTCACACTCACGTAACATACTTTTGACAAAGGAATTTTATGGTATTTGAACTAGATGAATACTTTTGGTCAATATCAATGAGGGTGTGTTTACCCAATATGAGCAGCGGCATAGCAGGACACCAAACGCTGCCTGCATCAACCAAGGCCACACGCAGTTCACCTCTGTAACTGCAATCGATTTCTCAGAGAAGTAAGTCAAGACGAAATCATTCACTAAAGCCACATATTGAGTTTAAAAAGAAAAACCTAGCAGCTTTCTAAAACTGAAGCTTCAACTTCTAAAAATGTTAACTTTACCTATTAAAAACCCCTTACCTTTTAGAGCTTAAGGTT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83608731 420 + 135191526 aatttttttttaaattaatgaattatattatatCCCTCATCCCCCCAACCCCTATTAAAGATCATTAGAATTATTTTGAAATGTTTTCACACTCACGTAACATACTTTTGACAAAGGAATTTTATGGTATTTGAACTAGATGAATACTTTTGGTCAATATCAACGAGGGTGTGTTTGCCCAATATGAGCAGCGACATAGCAGGACACCAAACGCTGCCTGCATCAACGAAGGCCACACGCAGTTCACCTCTGTAACTGCAATCGATTTCTCAGAGAAGTAAGTCAAGAAGAAATCATTCACTAAAGGCACATATTGGGTTTAAAAAGAAAAACCTAGCAGCTTTCTAAAACTGAAGCTTCAACTTCTAAAAATGTTAATTTTACCTATTAAAAACCCCTTACATTTTAGAGCTTAAGGTT i ponAbe2.chr9 C 0 I 2 s calJac3.chr1 77113022 412 + 210400635 AA-------ACATTTTAATGAATTATATTATATCACTCATCCCCCCGACACCTATTGAAGATAACTGGAATTATTTTGAACTGTTTTCACTCTCATGCAATATACTTTTGACAAAGTAATTTTATGGTATTTGAACTAGATCAATACTTCTGGTCAATATCAATGAGGATGTGTTTGCCCAATATGAGCAGCCGCATAGCAGGATACCAAACACTGCCTGAATCAACGAAGGCCACACGCAGTTCATCTCTGTAACTACAATCGATTTCTCAGAGAAGTTAGTCAAGATG-AATCATTCACAAAAGCCACATATTGTGTTTAAAAAGAAAAGTCTAGTAGCTTTCTAAAACTGAAGCTTCAACTTCTACAGATGTTAATTTTACCTATTAAAAACCCCATACATTTTACAGCTTAAGGTA i calJac3.chr1 C 0 C 0 e chlSab2.chr12 98711120 0 + 108555830 C e papAnu2.chr15 94499074 0 + 107442819 C e macFas5.chr15 98786927 0 + 112612857 C e rheMac3.chr15 97564538 0 + 112192347 C e nomLeu3.chr1a 76125218 0 - 122973662 C a score=1463173.000000 s hg38.chr9_GL383542v1_alt 33727 613 + 60032 ---AAAAAAAAATC---TAATGTAACAATATGTAACCGGGTCTCATCTATTTCACTACT--TTTTTTTTTTTCTCATGGGAAAAACCAGGAGATTTATGGAATCTACCCAAGAGATTAAGCAGATATCCAATGTTCAGCCTCGGATGTATATCACAAAGTTCTATAACTCCCATCTGGTTATCATAAGAATAAAAGGTTAAAACCTGGGGTTTTATTGTTACTTTAAACAATAAAATATTTTATTTGAAATAAGAAAACTGAAAGCCAATTTAGGGAGGCAGTCTGATGTCCCTGGAGCAAATGTGAATTTCCTTCAGTTTGGAAATAATAATAAAGTGTGACATATGAAAGAAGAAAATGCTTTCTTCCTTTACAGAAACTATGAGCAAACATCTCTAGGCTCAGGCCGGCTATCTTGCCTCTCTC-TTGCCTCATAGCCTGGAATTTACCCCCACAAGTCCACCCTCGGTTTTCTTTAAACTTCAACTTCCAGTTGACTTGGAAGTCTTCTTCATCCTGCCCAAGATATAAGGACATACATAGCTTGCTTTCTTAAGAGGAATTTTCCATGTTTCCCAGTGAACAATGACCTAACCATCCTTTAAGTTTTACTGAACACA s panTro4.chr9 86977354 613 + 137840987 ---AAAAAAAAATC---TAATGTAACAATATGTAACCAGGTCTCATCTATTTCACTACT--TTTTTTTTTTTCTCATGGGAAAAACCAGGAGATTTATGGAATCTACCCAAGAGATTAAGCAGATATCCAATGTTCAGCCTCGGATGTATATCACAAAGTTCTATAACTCCCATCTGGTTGTCATAAGAATAAAAGGTTAAAACCTGGGGTTTTATTGTTACTTTAAACAATAAAATATTTTATTTGAAATAAGAAAACTGAAAGCCAATTTAGGGAGGCAGTCTGATGTCCCTGGAGCAAACGTGAATTTCCTTCAGTTTGGAAATAATAATAAAGTGTGACATATGAAAGAAGAAAATGCTTTCTTCCTTTACAGAAACTATGAGCAAACATCTCTAGGCTTAGGCCGGCTATCTTGCCTCTCTC-TTGCCTCATAGCCTGGAATTTACCCCCACAAGTCCACCCTCGGTTTTCTTTAAACTTCAACTTCCAATTGACTTGGAAGTCTTCTTCATCCTGCCCAAGATATAAGGACATACATAGCTTGCTTTCTTAAGAAGAATTTTCCATGTTTCCCAGTGAACAATGACCTAACCATCCTTTAAGTTTTACTGAACACA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83609153 615 + 135191526 ---AAAAAAAAATC---TAATGTAACAATATGTAACCGGGTCTCATCTATTTCACTACTTCTTTTTTTTTTTCTCATGGGAAAAACCAGGAGATTTATGGAATCTACCCAAGAGATTAACCAGATATCCAATGTTCAGCCTCGGATGTATATCACAAAGTTCTATAACGCCCATCTGGTTATCATAAGAATAAAAGTTTAAAACCTGAGGTTTTATTGTTACTTTAAATACTAAAATATTTTATTTGAAATAAGAAAACTGAAAGCCAATTTAGGGAGGCAGTCTGATCTCCCTGGAGCAAATGTGAATTTCTTTCAGTTTGGAAATAATAATAAAGTGTGACATATGAAAGAAGAAAATGCTTTCTTCCTTTACAGAAACTATGAGCAAACATCTCTAGGCTCAGGCCGGCTATCTTGCCTCTCTC-TTGCCTCATAGCCTGGAATTTACCCCCACAAGTCCACCCTCGATTTTCTTTAAACTTCAACTTCCAATTGACTTGGAAGTCTTCTTCATCCTGCCCAAGATATAAGGACATACATAGCTTGCTTTCTTAAGAGGAATTTTCCATGTTTCCCAGTGAACAATGACCTAACCATCCTTTAAGTTTTACTGAACACA i ponAbe2.chr9 I 2 C 0 s rheMac3.chr15 97564538 612 + 112192347 ---aaaaaaaaaTC---TGATGTAACAATATGTAACCAGGTCTCATCTATTTCACTACA---TTTTTTTTTTCTCATGGGAAAAATCAGGAGATTTATGGAATCTACCTAAGAGACTAACCAGATATCCAATGTTCAGCCTCGGATGTATATCACAAAGTTCTATAACTCCCATCTGGTTATAATAAGAATAAAAGTTTAAAACCTGGGGTTTTATTGTTACtttaaataataaaatattttatttGAAATAAGAAAACTGAAAGCCAATTTAGGGAGGCAGTCTGATGTCCCTGGAGCAAATGTGAATTTCTTTCAGTTTGGAAATAATAATAAAGTGTGATATATGAAAGAAGAAAGTGCTTTCTTCCTTTACAGAAACTAAGATCAAACATCTCCAGGCTCAGGCCGGCTATCTTGCCTCTCTC-TAGCCTCATAGCCTGGAATTTACCCCCACATGTCCACCCTTGGTTTTCTTTAAACTTTAACTTCCAATTGACTTGGAAGTCCTCTTCATCCTGCCCAAGATATGAGGACATACATAACTTGCTTTCTTAAGAGGAATTTTCCATGTTTCCCAGTGAACAATGACCTAACCATCCTTTAAGTTTTACTGAACACA i rheMac3.chr15 C 0 C 0 s macFas5.chr15 98786927 612 + 112612857 ---aaaaaaaaaTC---TGATGTAACAATATGTAACCAGGTCTCATCTATTTCACTACA---TTTTTTTTTTCTCATGGGAAAAATCAGGAGATTTATGGAATCTACCTAAGAGACTAACCAGATATCCAATGTTCAGCCTCGGATGTATATCACAAAGTTCTATAACTCCCATCTGGTTATAATAAGAATAAAAGTTTAAAACCTGGGGTTTTATTGTTACTTTAAATAATAAAATATTTTATTTGAAATAAGAAAACTGAAAGCCAATTTAGGGAGGCAGTCTGATGTCCCTGGAGCAAATGTGAATTTCTTTCAGTTTGGAAATAATAATAAAGTGTGATATATGAAAGAAGAAAGTGCTTTCTTCCTTTACAGAAACTAAGATCAAACATCTCCAGGCTCAGGCCGGCTATCTTGCCTCTCTC-TAGCCTCATAGCCTGGAATTTACCCCCACATGTCCACCCTTGGTTTTCTTTAAACTTTAACTTCCAATTGACTTGGAAGTCCTCTTCATCCTGCCCAAGATATGAGGACATACATAACTTGCTTTCTTAAGAGGAATTTTCCATGTTTCCCAGTGAACAATGACCTAACCATCCTTTAAGTTTTACTGAACACA i macFas5.chr15 C 0 C 0 s papAnu2.chr15 94499074 612 + 107442819 ---aaaaaaaaatc---tgatgtaaCAATATGTAACCAGGTCTCATCTAtttcactaca---ttttttttttctcatgggaAAAACCAGAAGATTTATGGAATCTACCTAAGAGACTAACCAGATATCCAATGTTCAGCCTCGGATGTATATCACAAAGTTCTATAACTCCCATCTGGttataataagaataaaagtttaaaacctggggttttattgttactttaaataataaaatattttatttgaaataagaaaactgaaagccAATTTAGGGAGGCAGTCTGATGTCCCTGGAGCAAATGTGAATTTCTTTCAgtttggaaataataataaagtgtgaTATATGAAAGAAGAAAGTGCTTTCTTCCTTTACAGAAACTAAGATCAAACATCTCCAGGCTCAGGCCGGCTATCTTGCCTCTCTC-TAGCCTCATAGCCTGGAATTTACCCCCATATGTCCACCCTTGGTTTTCTTTAAACTTTAACTTCCAATTGACTTGGAAGTCCTCTTCATCCTGCCCAAGATATGAAGACACACATAACTTGCTTTCTTAAGAGGAATTTTCCATGTTTCCCAGTGAACAATGACCTAACCATCCTTTAAGTTTTACTGAACACA i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 98711120 610 + 108555830 ---aaaaaaaaTTC---TGATGTAACAATATGTAACCAGCTCTCATCTATTTCACTACA----TTTTTTTTTCTCATGGGAAAAACCACGAGATTTATGGAATCTACCTAAGAGACTAACCAGATATCCAATGTTCAGCCTCGGATGTATATCACAAAGTTCTATAACTCCCATCTGGTTATAATAAGAATAAAAGTTTAAAACCTGGGGTTTTATTGTTACTTTAAGTAATAAAATATTTTATTTGAAATAAGAAAACTGAAAGCCAATTTAGGGAGGCAGTCTGATGTCCCTGGAGCAAATGTGAATTTCTTTCAGTTTGGAAATAATAATAAAGTGTGATATATGAAAGAAGAAAGTGCTTTCTTCCTTTACAGAAACTAAGATCAAACATCTCCAGGCTCAGGTCGGCTATCTTGCCTCTCTC-TAGCCTCATAGCCTGGAATTTACCCCCACATGTCCA-CCTTGGTTTTCTTTAAACTTTAACTTCCAATTGACTTGGAAGTCCTCTTCATCCTGCCCAAGATATGAGGACATACATAACTTGCTTTCATAAGAGGAATTTTCCATGTTTCCCAGTGAACAATGACCTAACCATCCTTAAAGTTTTACTGAACATA i chlSab2.chr12 C 0 C 0 s calJac3.chr1 77113434 614 + 210400635 AAAAAAAAAAAACCACTTTATGTAACAATATGTAACTGGGTTTCATCTATTTCACTACA---TTTTTTTTTACTCATGGGAAAAACC---AGATTTATGGAACCTACCTAAGACATTAACCAGGTATCCAATGTTCAGCCTCGGATATATATCACAAACTTTTGTAACTCCCATCTGGGTATAGTAAGAATAAAAGTTTAAAACCTGGGGTTTTATTGTTACtttaaataataaaatatttttCTTGAAATAAGAAAACTGAAAGCCAATTTAGGGAGGCAGTCAGATATCCCTGGAGCAAATGTGAATTTCTTTCAGTTTGGAAATAATAATAAAGTGTGACATATGAGAGAAGAAAGTGCTCTCTGCCTTTACGGAAACCATGAGCAAGCATCTCTCAGCTCAGGCCAGCTATCTTGCCTCTCTCTTTGCCCCATAGCCTGGAATTTACCCCTTCATGTCTACCCCTGGTTTTC--TAAACTTCAACTTCCAATTGACTTGGAAGTCTTCTTCATCCTGCCCAAGATATGGGGACGTATGTAGCTTGCTTTCTTAAGAGGCATTTTCCATGCTTCTCAGTGAACAATTACCTAACCATCCTTTAAGTTTTGCTGAACACA i calJac3.chr1 C 0 I 749 e nomLeu3.chr1a 76125218 0 - 122973662 C a score=1229799.000000 s hg38.chr9_GL383542v1_alt 34340 552 + 60032 TCTGAGGTTGATACTTTTGAAGGAGTTTGAATATTTGGCCAAATTTTCATCTTGTAGTTTACCATATGCTGAAATACTTAGTCTATTCTCACTAATCTATTCATTCTAGAGTATAAATTACCAAAGGTATTTTAAATTATTACCTCTCTGAAAGATATTATACATTGACGGATGGAGAGAATCACTTTTTAAAAAGTATTTGAggctgggcacagtgactcacgcctgtaatcccaacactctgagaggcgaatcacttgaggccaggagttcgagatatgtctgggccaaaatgacgaaaccccatctctactgaaaatacaaaaattagcatggtgtggtggcacatgcctgtgatcccagctactcttgaggctgaggcaggagaattgtttgaatccgggaggtggaggttgctgtgaaccga-------------------gactgcaccactgcactccagcctgggtgacagagcaagaccgtgtctcaaaaTGAATAAATTAATTAATTAAATAAAAAGTATTTCAGAATCTATAAGTG---TTATGCTGTGCCAGTTCTTAGAAG s panTro4.chr9 86977967 552 + 137840987 TCTGAGGTTGATACTTTTGAAGGAGTTTGAATATTTGGCCAAATTTTCATCTTGTAGTTTACCATATGCTGAAATACTTAGTCTATTCTCACTAATCTATTCATTCTAGAGTATAAATTACCAAAGTTATTTTAAATTATTACCTCTCTGAAAGATATTATACATTGATGGATGGAGAGAATCACTTTTTAAAAAGTATTTGAggctgggcacagtgactcgcacctgtaatcccaacactctgagaggcaaatctcttgaggccaggagttcgagatatgtctgggccaaaatgacgaaaccccatctctactgaaaatacaaaaattagcatggtgtggtgacacatgcctgtgatcccagctactcttgaggctgaggcaggagaattgtttgaatccgggaggtggaggttgctgtgaaccga-------------------gactgcaccactgcactccagcctgggtgacagagcaagaccgtgtctcaaaaTGaataaattaattaattaaataaaaaGTATTTGAGAATCTATAAGTG---TTATGCTGTGCCAGTTCTTAGAAG i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83609768 550 + 135191526 TCTGAGGTTGATACTTTTGAAGGAGTCTAACTATTTGGCCAAATTTTCATCTTGTAGTTTACCATATGCTGAAATACTTAGTCTATTCTCACTAATCTATTCATTCTAGAGTATAAATTACCAAAGTTATTTTAAATTATTACCTCTCTGAAAGATATTATACATTGATGGACGGAGAG-ATCACTTTTTAAAAAGTATTTGAggctgggcacagtgactcacgccagtaatcccaacactttgagaggcgaatcacttgaagccaggagttcgagatatgtctgggccaaaatggcgaaaccccatctctactgaaaatacaaaaattagcctggtgtggtggcacatgcctgtgatcccagctactcttgaggctgaggcaggagaattgtttgaatccgggaagtggaggttgctgtgaaccga-------------------gactgcaccactgcactccagcctgggtgacagagcaagaccg-gtctcaaaaTGAATAAATAAATTAGTTAAATAAAAAGTATTTAAGAACCTATAAGTG---TTATGCTGTGCCAGTTCTTAGAAG i ponAbe2.chr9 C 0 C 0 s rheMac3.chr15 97565150 568 + 112192347 TCTGAGGTTGATG-TTTTGAAGGAGTTTGACTACTTGGCCAAGTTTTCATTTTGTAGTTTACCATATGCTGAAATGCTTAGTCTATTCTCACTAATTTATTCATTCTAGAGTACAAATTGCCAAA-TTATTTTAAATTATTACCTCTCTGAAAGACATTATACATTGATGGACAGAGAGAACCACTTTTTAAAAAGTATTTGAggctgggcacggtgact-atgcctgtaatcccagcactttgagaggcaaatcacttgaagccaggagttcgagataagtctgggccaaaatggcaagaccccatctctgctgaaaatacaaaaattagcctggtgtggtggtgcgttcctgtggtcccaactactcgtgaggctgaggcaggagaattgtttgaacctgggaggtagaggttgctgtgagccaacctccaccagcagctggagtgctgcaccattgcactccagcctgggtgacacagcaagaccctgtctcaaaaTGAATAACTTAATTAATCAAATAAAAAGCATTTGAGAATCTATAAGTG---TTATGCTGTGCCAGTTCTTAGAAG i rheMac3.chr15 C 0 C 0 s macFas5.chr15 98787539 568 + 112612857 TCTGAGGTTGATG-TTTTGAAGGAGTTTGACTACTTGGCCAAGTTTTCATTTTGTAGTTTACCATATGCTGAAATGCTTAGTCTATTCTCACTAATTTATTCATTCTAGAGTACAAATTGCCAAA-TTATTTTAAATTATTACCTCTCTGAAAGACATTATACATTGATGGACAGAGAGAACCACTTTTTAAAAAGTATTTGAggctgggcacggtgact-atgcctgtaatcccagcactttgagaggcaaatcacttgaagccaggagttcgagataagtctgggccaaaatggcaagaccccatctctgctgaaaatacaaaaattagcctggtgtggtggtgcgttcctgtggtcccaactactcgtgaggctgaggcaggagaattgtttgaacctgggaggtagaggttgctgtgagccaacctccaccagcagctggagtgctgcaccattgcactccagcctgggtgacacagcaagaccctgtctcaaaaTGAATAACTTAATTAATCAAATAAAAAGCATTTGAGAATCTATAAGTG---TTATGCTGTGCCAGTTCTTAGAAG i macFas5.chr15 C 0 C 0 s papAnu2.chr15 94499686 568 + 107442819 TCTGAGATTGATG-TTTTGAAGGAGTTTGACTACTTGGCCAAGTTTTCATTTTGTAGTTTACCATATGCTGAAATGCTTAGTCTATTCTcactaatttattcattctagAGTACAAAttaccaaa-ttattttaaattattacctCTCTGAAAGATATTATACATTGATGGACAGAGagaaccactttttaaaaagtatttgaggctgggcacggtgact-atgcctgtaatcccagcactttgagaggcaaatcacttgaagccaggagttcgagataagtCTGGGCCAaaatggcaagaccccatctctgctgaaaatacaaaaattagcctggtgtggtggtgcgttcctgtggtcccaactactcgtgaggctgaggcaggagaattgtttgaacctgggaggtggaggttgctgtgagccaaccTCCACCAGCAGCTGGAGTgctgcatcattgcactccagcctgggtgacagagcaagaccctgtctcaaaatgaataagttaattaatcaaataaaaagcatttgagaatCTGTAAGTG---TTATGCTGTGCCAGTTCTTAGAAG i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 98711730 565 + 108555830 TCTGAGGTTGATG-TTTTGAAGGAGTTTGACTACTTGGCCAAGTTTTCATTTTGTAGTTTACCATATGCTGAAATGCTTAGTCTATTCTCACTAATGTATTCATTCTAGAGTACAAATTACCAAA-TTATTTTAAATTATTACCTCTCTGAAAGACATTATACATTGATGGACAGAGAGAACCACTTTTTAAAAAGTATTTGAggctgggcacggtgact-atgcctgtaatcccagcactttgagaggcaaatcacttgaagccaggagtttgagataagtctgggccaaaatggcaaaaccccacttctgctgaaaatacaaaaagtagcctggtgtggtggtgcattcctgtggtcccaacta---gtgaggctgaggcaggagaattgtttgaacctgggaggtggaggttgctgtgagccaacctccactagcagctggagtgctgcaccattgcactccagcctgggtgacagagcaagaccctgtctcaaaaTGAATAAGTTAATTAATCAAATAAAAATCATTTGAGAATCTTTAAGTG---TTATGCTGTGTCAGTTCTTAGAAG i chlSab2.chr12 C 0 C 0 s calJac3.chr1 77114797 547 + 210400635 TCTGAGGTTGATGCTTTTGAAGGAGTTTGAATATTTGGCCAAATTTTCATCTAGTGGTTTACCATATACTGAAATGCTTAGTCTATTCTCACTAACTTATTCATTCTAGAGTATAAATTACCAAAATTATTTTAAATTATTACATCTCTGAAAGACATTATAAATTGATGGATAGAGAGAATCATTTTTTAAAAAGTATTTGAggctgggcatggtggctcaggcttgtaatcccagcactttgagag--aaatcacttgaggccaggagctcaagacaagcctgggctaaaatggcgaaaccccgtctctactgaaaatacaaaaattagcccggtggggtggtgcatgcctgtgatcccagctactcatgaggctgaggcaggagaattgcttgaaccagggtgatggaggttgcagtgagctga-------------------gattgcactgctgcactccctcctgggtgacagaacaagaccctgtctcaaaataaaTA----CATTTAAAAAATGAAAAGTATTTGAGACTCTATAAGTGTTATTATGCTCTGCCAGTTCTTAAG-- i calJac3.chr1 I 749 C 0 e nomLeu3.chr1a 76125218 0 - 122973662 C a score=384899.000000 s hg38.chr9_GL383542v1_alt 34892 312 + 60032 CTGCATATAGGATggccgggcgcgatggctcacgcctgtaatcccagcactttgggaggccgacgt--ggggggatcaagaggtcaggagatcgagaccatcctgactaacatggtgaaaccccgtctc--------------------tacta--------aaaatacaaaaaattagccgggcgtggtagtgggcgcctgtagacccagctactcgggaggctgaggcaggagaatggcgtgaacccgggaggcggagcttgcagtaagccgagatcgcgccactgcactccagcctgggcgacagagccacactccgtctc------------------aaaaaaaaaaagaagaaa s panTro4.chr9 86978519 311 + 137840987 CTGCATATAGGATggccgggcgcgatggctcacgcctgtaatcccagcaatttgggaggccgacgt--ggggggatcaagaggtcaggagatcgagaccattctgactaacatggtgaaacaccgtctc--------------------tacta--------aaaatacaaaaaattagccgggcgtggtagtgggcacctgtagacccagctactcgggaggctgaggcaggagaatggcgtgaacccgggaggcggagcttgcggtaagccgagatcgcgccactgcactccagcctgggcgacagagccacactccgtctc-------------------aaaaaaaaaagaagaaa i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83610318 356 + 135191526 CTGCATATAGGATggccaggcacggtggctcacgcctgtaatcccagcactttgggaggccgacatggggggggatcacgaggtcaggagatcgagaccatcctggctaacatggtgaaaccccgttactaaaaatacaaaatactaaatactaaaaatactaaaatacaaaaaattagctggacgtggtagtgggcgcctgtagatccagctactcgggagcctgaggcaggagagtggtgtgaacccgggaggcggagcttgcagtaaaccgagatcgcgccactgcactccagcctgggcgacagagagacactccgtctc----aaaaagaaaaaaaaaaaaaaaagaagaaGAAA i ponAbe2.chr9 C 0 C 0 s rheMac3.chr15 97565718 246 + 112192347 CTGCATATAGGATggccgggcgcagtggctcatgcctgtaatcccagcactttaggaggccaaggt--ggggggatcacgaggtcaggagatcgagaccatcctggctaagacggtgaaaccccttctt--------------------tacta--------aaaatacaaaaacttagctgggcatggtggcaggtgcctgtagtcccagctacttggaaggctgaggcaggagaat----------------------------------------------------------------------agTCACCCTCCATCTC--------------AAAAAAAAAAAAAAAAAAGCAG i rheMac3.chr15 C 0 C 0 s macFas5.chr15 98788107 260 + 112612857 CTGCATATAGGATggccgggcgcagtggctcatgcctgtaatcccagcactttaggaggccaaggt--ggggggatcacgaggtcaggagatcgagaccatcctggctaagacggtgaaaccccttctt--------------------tacta--------aaaatacaaaaacttagctgggcatggtggcaggtgcctgtagtcccagctacttggaaggctgaggcaggagaat----------------------------------------------------------------------agTCACACTCCATCTCaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaGCAG i macFas5.chr15 C 0 C 0 s papAnu2.chr15 94500254 251 + 107442819 CTGCATATaggatggccgggcgcagtggctcatgcctgtaatcccagcactttgggaggccaaggt--ggggggatcacgaggtcaggagatcgagaccatcctggctaagacggtgaaaccccttctt--------------------tacta--------aaaatacaaaaacttagctgggcatggtggcaggtgcctgtagtcccagctacttggaaggctgaggcaggagaat----------------------------------------------------------------------agtcacactccatctc---------aaaaaaaaaaaaaaaaaaaaaaagcag i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 98712295 250 + 108555830 CCGCATATAGGATggccgggcgcagtggctcacgcctgtaatcccagcactttggaaggccaaggt--ggggggatcacaaggtcaggagatcgagactatcctggcgaagacggtgaaaccccttctt--------------------tacta--------aaaatacaaaaacctagctgggcgtggtggcgggtgcctgtagtcccagctagttgggaggctgaggcaggagaat----------------------------------------------------------------------agcCACACTCCATCTC----------aaaaaaaaaaaaaaaaaaaaGAGCAG i chlSab2.chr12 C 0 C 0 e calJac3.chr1 77115344 0 + 210400635 C e nomLeu3.chr1a 76125218 0 - 122973662 C a score=598602.000000 s hg38.chr9_GL383542v1_alt 35204 259 + 60032 CTGCATATAGGATACAAGTTCTGTGAAATGATACGCAAAATATTAGAAGACATTTAAAACTTTTCCCTATGATT----------------------ACCAAGGTTCTAAAAACTTCCTTATCAAGGACGTACTTATCAAGCCCTCCTTTATCGAGGACTTCTCAGGCTTCTGCACCCACCCCCACTCAACCTACTGAATCTATAGTCACGTGTGGAAAGTGGGAATCTGAGCGCTCAACTAAAGACCAAAACTTGAA--AATGTAACAATAAAAAATCACAGA s panTro4.chr9 86978830 259 + 137840987 CTGCATATAGGATACAAGTTCTGTGAAATGATACGCAAAATATTAGAAGACATTTAAAACTTTTCCCTATGATT----------------------ACCAAGGTTCTAAAAACTTCCTTATCAAGGACTTACTTATCAAGCCCTCCTTTATCGAGGACTTCTCAGGCTTCTGCACCCACCCCCACTCAACCTACTGAATCTATAATCACGTGTGGAAAGTGGGAATCTGAGCGCTCAACTAAAGACCAAAACTTGAA--AACGTAACAATAAAAAATCACAGA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83610674 259 + 135191526 CTGCATATAGGATACAAGTTCTGTGAAATGATATGCAAAATATTAGAAGACATTTAAAACTTTTCCCTATGATT----------------------ACCAAGATTCTAAAAACTTCCTTATCAAGGACTTACTTATCAAGCCCTCCTTTATCGAGGACTTCTCAGGCTTCTGCACCCACCCCCACTCAACCTACTGAATCTGTCATCACGTGTGGAAAGTGGGAATCTGAGCGCTCAACTAAAGACCAAAAGTTGAA--AATGTAACAATAAAAAATCACAGA i ponAbe2.chr9 C 0 I 147 s rheMac3.chr15 97565964 281 + 112192347 CTGCATATACGATACTAGTTCTGTGAAATGATGTGCAAAATATTAGAAGACATCTAAAACTTTTCCCTATGATCAAGTTGAGAGAGGTTGGGTTAAAACAAGATTCGAAAAACATCCTTATCAAGGACTTATTTATCAAGTCCTCCTTTATTGAGGACTTCTCAGGCTTCTGCACCCACCCCCACTCAACCTGCTGAATCTGTCATCACGTGTGGAAAGTGGGAATCTGAGCACTCAACTAAAGACCAAACACTGAG--AATGTAATGATAAAAAATCACAGA i rheMac3.chr15 C 0 C 0 s macFas5.chr15 98788367 281 + 112612857 CTGCATATACGATACTAGTTCTGTGAAATGATGTGCAAAATATTAGAAGACATCTAAAACTTTTCCCTATGATCAAGTTGAGAGAGGTTGGGTTAAAACAAGATTCGAAAAACATCCTTATCAAGGACTTATTTATCAAGTCCTCCTTTATTGAGGACTTCTCAGGCTTCTGCACCCACCCCCACTCAACCTGCTGAATCTGTCATCACGTGTGGAAAGTGGGAATCTGAGCACTCAACTAAAGACCAAACACTGAG--AATGTAATGATAAAAAATCACAGA i macFas5.chr15 C 0 C 0 s papAnu2.chr15 94500505 281 + 107442819 ctgcaTATAGGATACTAGTTCTGTGAAATGATGTGCAAAATATTAGAAGACATCTAAAACTTTTCCCTATGATCAAGTTGAGAGAGGCTGGGTTAAAACAAGATTCGAAAAACATCCTTATCAAGGACTTATTTATCAAGTCCTCCTTTATTGAGGACTTCTCAGGCTTCTGCACCCACCCCCACTCAACCTGCTGAATCTGTCATCACGTGTGGAAAGTGGGAATCTGAGCACTCAACTAAAGACCAAATGTTGag--aatataatgataaaaaatcaCAGA i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 98712545 281 + 108555830 CTGCATATAGGATACCAGTTCTGTGAAATGATGTGCAAAATATTAGAAGACATCTAAAACTTTTCCCTATGATCAAGTTGAGAGAGGTTGGGTTAAAACAAGATTCGAAAAACATCCTTATCAAGGACTTATTTATCAAGTCCTCCTTTATTGAGGACTTCTCAGGCTTCTGCACCCACCCCCACTCGACCTGCTGAATCTGTCATCACGTGTGGAAAGTGGGAATCTGAGCACTCAACTAAAGACCAAATGTTGAG--AATGTAATGATAAAAAATCACAGA i chlSab2.chr12 C 0 C 0 s calJac3.chr1 77115344 280 + 210400635 CTGCATGTAGAATATAAGTTCTGTGAAATGATATGAAAAATATTAGAAGACATTTAAAACTTTTCCTTATGATTAAGTTGGGAGAGATTGGGTTAAAACAAGTTTCAAAAAACTTCCTTATCAGGGACTTAGTTATCAAG---TCCTTTTTCGAGGACTTCTCAGGCTTCTGCACCCACCCCCACTCAAGCTACTGAATCTGTCATCATGTACAAAAAGTGGGAATCTGGGCACTCAACTCAAGACCACAAGTTGAGTAAATGTAACGATCAAAAATCACAGG i calJac3.chr1 C 0 C 0 e nomLeu3.chr1a 76125218 0 - 122973662 C a score=1375706.000000 s hg38.chr9_GL383542v1_alt 35463 591 + 60032 TGACAGTTCCAGACCTTCCTACTGGTGTAGAAGAATTTATAAGAATTGTGAGAGTGATGGTCACAAAATAATCAATGAATTAAGAAAAGAACAATGATGCAAACCTTCAGACTGAAACAGATTTGCCTTTAGCTATTttatggtaagacttccaaaatgccaagactaaagagaaaaaaaatcctcaaagcttcctcagagaaaataacaaactacttacaaaaacataagaagtaaatagaaaactcatagagcaattcttttgaagttctgaaagtaaaggatttttaaactaggtttctattcctggccaaaattcattcaagcgtacagcacatttttagacctgtgaggactcaaaaaatttgacccctacaaacctctatg-aaaaaataaagaggctgtacttcagcaaaataataat-------------aaattatataagaaagagcagtaaatacaaaaaacagtAAAATATATAGT------TAAGTAATTTTTGATGGCTCTAATTAATGAATAAATAATAATCTGGAGCTAAAATCACATTTATGATTTTTGGGCAACATAGTGGGACTCTGTCTCCAAAACTAAATAAATAGAAAG s panTro4.chr9 86979089 603 + 137840987 TGACAGTTCCAGACCTTTCTACTGGTGTAGAAGAATTTATAAGAATTGTGAGAGTGATGGTCACAAAATAATCAATGAATTAAGAAAAGAACAATGATGCAAACCTTCAGACTGAAACAGATTTGCCTTTAGCTATTTTAtgataagacttccaaaatgccaagactaaagagaaaaaaaatcctcaaagcttcctgagagaaaataacaaactacttacaaaaacataagaagtgaatagaaaactcatagagcaattcttttgaagttctgaaagtaaaggatttttaaactaggtttctattcctggccaaaattcattcaagcgtacagcacatttttagacctgcgaggactcaaaaaatttgacccctacaaacctctatg-aaaaaataaagaggctgtacttcagcaaaataataataaattccaaga-gaaattatacaagaaagagcagtaaatacaaaaaacagtAAAATATATAGT------TGAGTAATTTTTGATGGCTCTAATTAATGAATAAATAATAATCTGGAGCTAAAATCACATTTATGATTTTTGGGCAACATAGTGGGACTCTGTCTCCAAAACTAAATAAATAGAAAG i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83611080 601 + 135191526 TGACAGTTCCAGACCTTCCTACTGGTGTAGAAGAATTTATAAGAATTGTGAGAACGATGGTCACAAAATAATCAATGAATTAAGAAAAGAACAATGATGCAAACCTTCAGACTGAAACAGATTTGCCCTTAGCTATTttatggtaagacttccaaaatgccaagactaaagag--aaaaaatcctcaaagctttctgagagaaaataacaaattacttacaaaaacataagaagtgaatagaaaactcatagagcaattcttttgaagttctgaaagtaaaggatttttaaactaggtttctattcctggccaaaattcattcaagcgtacagcacatttttagacctgcgaggactcaaaaaatttgacccctacaaacctctatg-acaaaataaagaggctgtacttcagcaaaataataataaattccaagaggaaattatataagaaagagcggtaaatac-aaaaacagtaaaatatatagt------taagtAATTTTTGATGGCTCTAATTAATGAATAAATAATAATCTGGAGCTAAAATCACATTTATGATTTTTGGGCAACATAGTGGGACTATGTCTCCAAAACTAAATAAATAGAAAG i ponAbe2.chr9 I 147 C 0 s rheMac3.chr15 97566245 608 + 112192347 TGACAGTTCCAGACCTTCCTACTGGTGTAGAAGAAATTATAAGAATTGTGAGAACGATAGGCACAAAATAATCAATGAATTAAGACAAGAACAATGCTGCAAACCTTCAGACTGaaacagatttgcccttagctattttatggtaagacttccaaaatgccaagactaaagag-aaaaaaatcctcaacgctttctgagagaaaataacaaattacttacaaaaacataagaagtgaatagaaaactcgtatagcaatacctttaaagttctgaaagtaaaggatttttaaactaggtttctattcctcgccaaaattcattcaagcatatagcacatttttagacatgtgaggactcaaaaaatttgacccctacaaacctccatg-aaaaattaaagaggctgtacttcagtaaaataataataaattccaaga-gaaactatataagaaacagcagtaagtagaaaaaacattaacatatatagttaaggataagtaattgctgattgCTCTAATTAATGAATAAATAATAATCTGGAGCTAAAATCACATTTATGATTTTtgggcaacatggtgagactctgtctccaaaaataaataaaTAGAAAG i rheMac3.chr15 C 0 C 0 s macFas5.chr15 98788648 608 + 112612857 TGACAGTTCCAGACCTTCCTACTGGTGTAGAAGAAATTATAAGAATTGTGAGAACGATAGGCACAAAATAATCAATGAATTAAGACAAGAACAATGCTGCAAACCTTCAGACTGaaacagatttgcccttagctattttatggtaagacttccaaaatgccaagactaaagag-aaaaaaatcctcaacgctttctgagagaaaataacaaattacttacaaaaacataagaagtgaatagaaaactcgtatagcaatacctttaaagttctgaaagtaaaggatttttaaactaggtttctattcctcgccaaaattcattcaagcatatagcacatttttagacatgtgaggactcaaaaaatttgacccctacaaacctccatg-aaaaattaaagaggctgtacttcagtaaaataataataaattccaaga-gaaactatataagaaacagcagtaagtagaaaaaacattaacatatatagttaaggataagtaattgctgattgctctaattaatgaataaataataatCTGGAGCTAAAATCACATTTATGATTTTtgggcaacatggtgagactctgtctccaaaaataaataaaTAGAAAG i macFas5.chr15 C 0 C 0 s papAnu2.chr15 94500786 608 + 107442819 TGACAGTTCCAGACCTTCCTACTGGTGTAGAAGAAATTATAAGAATTGTGAGAACGATAGGCACAAAATAATCAATGAATTAAGACAAGAACAATGCTGCAAACCTTCAGACTGAAACAGATTTGCCCTTAGCTATTTTATGGTAAGACTTCCAAAATGCCAagactagagag-aaaaaaatcctcaacgctttctgagagaaaataacaaattaCTTACAAAAACATAAGAAGTGAATAGAAAACTCATATAGCAATACCTTTGAAGTTCTGAAAGTAAAGGATTTTTAAACTAGGTTTCTATTCCTCGCCAAAATTCATTCAAGCATATAGCACATTTTTAGACATGTGAGGACTCAAAAAATTTGACCCCTACAAACCTCCATG-AAAAATTAAAGAGGCTGTActtcagtaaaataataataagttccAAGA-GAAACTATATAAGAAACAGCAGTAAGTAGAAAAAACATTAACATATATAGTTAAGGATAAGTAATTGCTGATTGCtctaattaatgaataaataataatctgGAGCTAAAATCACATTTATGAtttttgggcaacatggtgagactctgtctccaaaaataaataaatagaaag i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 98712826 608 + 108555830 TGACAGTTCCAGACCTTCCTACTGGTGTAGAAGAAATTATAAGAATTGTGAGAACGATAGGCACAAAATAATCAATGAATTAAGACAAGAACAATGCTGCAAACCTTCAGACTGaaacagatttgcccttagctattttatggtaagacttccaaaatgccaagactaaagag-aaaaaaatcctcaacgctttctgagagaaaataacaaattacttacaaaaacataagaagtgaatagaaaactcatatagcaatacctttgaagttctgaaagtaaaggatttttaaactaggtttctattcctcgccaaaattcattcaagcatatagcacatttttagacatgtgaggactcaaaaaatttgacccctacaaacctccatg-aaaaattaaagaggctgtacttcagtaaaataataataaattccaaga-gaaactatataagaaagagcagtaagtagaaaaaacagtaacatatatagttaaggataagtaattgctgattgCTCTAATTAATGGATACATAATGATCTGGAGCTAAAATCACATTTATGATTTTtgggcaacatggtgagactctgtctccaaaaataaataaaTAGAAAG i chlSab2.chr12 C 0 C 0 s calJac3.chr1 77115624 595 + 210400635 TGACAGTTCCAGACCTTCCTACTG--GCAGAAGAAATTATAAGAACTGTGAGAGCGATGGGCACAAAATAATCAATGAATTAAGAAAAGAGCAATGATGCAAACCTTCAGACGGAAACAGATTTGCCCTTGGCTATTtcatggtaagacttccaaaatgccaagactagagaa----aaagtcctcaaagctttctgagagaaaataatacattacttacaaaaacataagaagtgaatagaaaactcatacagcaataactttgaagttctcaaagtaaaggatttttaaactaggtttctattcctggccaaaattcattcaagtgtacaacatatttttagacctctaaggactcaaaaaatatgacccctgcaaatctctatgaaaaaaataaagaggctgtacttcagcaaaataaaaataaatccc-aga-gaaatgaTATAAG----AGCAGTAAATAAAAGAAACAGTAAAATACATAGT-TAGGATAAGTAATTGTTAATTGCTTTAATTAATGAATAAATAATAATCTGGAACTAAATTTACATTTATGATTGTTAAGCAACA---TGAGACTATGTCTCCAAAAATAAATAAATAAAAAG i calJac3.chr1 C 0 C 0 e nomLeu3.chr1a 76125218 0 - 122973662 C a score=527132.000000 s hg38.chr9_GL383542v1_alt 36054 303 + 60032 Aggcccagtgcggtggctcacgcttgtaatcccagcactttgggagtccgaggctggcagatcatgaggtcaggagttcaagatcagcctggcccatatagtgaaaccccgtctctactaaaaatacaaaaaattagccaggcctggtggtgcacacctgtaggttcagttactcaggaggctgaggcaggagaatcacttgaacccggaaggcggagattgcggtaaaccgagatcgcaccactgcactccagcctgggcaagagagcgagattctgtctc----------aaaaaaaaaaaaaaaaagaaa s panTro4.chr9 86979692 300 + 137840987 Aggcccagtgcggtggctcacgcttgtaatcccagcactttgggagtccaaggctggcagatcatgaggtcaggagttcaagatcagcctggcccatatagtgaaaccccgtctctactaaaaattcaaaaaattagccaggcctggtggtacacacctgtaggctcagctactcaggaggctgaggcaggagaatcacttgaacccggaaggcggagattgcagtaaaccgagatcacaccactgcactccagcctgggcaagagagcgagattctgtctc------------aaaaaaaaaaaaaaagaa- i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83611681 302 + 135191526 Aggcccggtgtggtggctcacgcttgtaatcccagcactttgggagtccgaggctggcagatcacgaggtcaggagttcaagatcagcctggcccatatggtgaaaccccgtctctactaaaaatacaaaaaattagccaggcctggtggtgcacacctgtaggctcagctactcaggaggctgaggcaggagaatcacttgaatccggaaggcggagattgcggtgaaccgagatcacaccagtgcactccagcctgggcaagagagcgagattccgtctc----------aaaaaaaaaaaaaaaagaaa- i ponAbe2.chr9 C 0 C 0 s rheMac3.chr15 97566853 313 + 112192347 Aggcccggtgcggtggctcatgcttgtaatcccagcactttgggagtccaaggctagcagatcacaaggtcagcagttcaagaccagcctggcccatatggtgaaaccccacctctactaaaaatacaaaaaattagccaggcatagtggtgcacacctgtaggcccagctactcaggaggctgaggcaggagaatcacttgaacctggaaggcagagattgtggtgaactgagattgcaccactgcactccagcctgggcaagagagcaagactctttctcaaaaaaaaaaaaaaagaaagaaaaaagaaaa i rheMac3.chr15 C 0 C 0 s macFas5.chr15 98789256 312 + 112612857 Aggcctggtgcggtggctcatgcttgtaatcccagcactttgggagtccaaggctagcagatcacaaggtcagcagttcaagaccagcctggcccatatggtgaaaccccacctctactaaaaatacaaaaaattagccaggcatagtggtgcacacctgtaggcccagctactcaggaggctgaggcaggagaatcacttgaacctggaaggcagggattgtggtgaactgagattgcaccactgcactccagcctgggcaagagagcaagactctttctc-aaaaaaaaaaaaaagaaagaaaaaagaaaa i macFas5.chr15 C 0 C 0 s papAnu2.chr15 94501394 311 + 107442819 aggcccggtgcggtggctcatgcttgtaatcccagcactttgggagtccaaggctagcagatcacaaggtcagcagttcaagaccagcctggcccatatggtgtaaccccacttctactaaaaatacaaaaaattagccaggcatagtggtgcacacctgtaggcccagctactcaggaggctgaggcaggagaatcacttgaacctggaaggcagagattgtggtgaactgagattgcaccactgtactccagcctgggcaagagagcaagactctttctc--aaaaaaaaaaaaaaaaaaaaaagaaagaa i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 98713434 297 + 108555830 Aggcctcgtgcggtggctcacgcttgtaatcccagcactttgggagtccaaggctagcagatcacaaggtcagcagttcaagaccagcctggctcatatggtgaaaccccgcctctactaaaaatacaaaaaattagccaggcatggtggtgcacacctgtaggcccagctactcaggaggctgaggcaggagaatcacttgaacccagaaggcagagattgtggtgaactgagattgcaccactgcactccagcctgggcaaaagagcaagactctttctc----------------aaaaaaaaaaaaaaa i chlSab2.chr12 C 0 C 0 e calJac3.chr1 77116219 0 + 210400635 C e nomLeu3.chr1a 76125218 0 - 122973662 C a score=2436777.000000 s hg38.chr9_GL383542v1_alt 36357 1164 + 60032 agaaaagaaAAGAAGAAAaaaggcccaataataggcaagaata-tttgaaaaagaggtacaatggccaggcatggtggctcacctctgtaatccaga-actttgggaggctgaggcgggtggatcacctgaggtcagaagttcaagaccagcctagccaacacggtgaaacccggtctctactcaaa------------------------------------------------------------atacaaaacttagccgggcatggtggcaggtgcctgtaatctcacctactcaggaggctg------------------------------------------------------------aggcaggagaatcacttgaacctgggaggtggaggttgcagtgagctgagattacgtcactgcactccagcctgggcgacaagagtgaaactctgtct--aaaaaaaaaacaaaaaa--acaatgaatggcagtttgttctgtcaatattaaggtgaattataaaactgttgaaaacagcacagagtggaactgttacaggaataaacaaattgataagtagcgcggaatagagagtacagaaacagCCA------TGTTTGTTTGGAAATGTAGCATGTTTATTAACTTATTCTACATGTGTTTAATGAACAACAGGCATTGTGCACagcataacaaccaaaacagtccatatccttgggtcaaagaggttatagtctagtgaggcggggcaagacaatcagccagaatagatgagtcaacatcattggaaattcgagaggagaaatattatggagaaaaaaacgttgaggaagaaagagaatgataggggtaacatgcaattttaagtacgtgatgtgcatgatcctctctggtcaggaggcattgatgcaaaggtttgaaggaggacagagactctcctaggcagacatttggcagaaggacacccaggccatggaaccagcactgacctgtttctggatgggatagtacctggcctgctagaggaacggagagaacagtgtgtctgCGtataatgagggtagcattctgaatgagtggaaagagaatgaacaactcaacaaatggttttggaacaaataaatatctctttggaacttgtatattatctatcctaccctacaccatacacacacaaaaagagattctagatggattatggaactaaatgCAGTgacttccagttaaagatggtgaattgagcaccttcatctatgctggctccttccccaaaacttattaagatga s panTro4.chr9 86979992 1162 + 137840987 --aaaagaaaagaaGAAAaaagtcccaaaaataggcaagaata-tttgaaaaagaggtacaatggcccggcatggtggctcacccctggaatccaga-actttgggaggctgaggcgggtggatcacctgaggtcagaagttcaagaccagcctagccaacacggtgaaacccggtctctactcaaa------------------------------------------------------------atacaaaacttagctgggcgtggtggcaggtgcctgtaatctcacctactcaggaggctg------------------------------------------------------------aggcaggagaatcacttgaacctgggaggtggaggttgcagtgagctgagattacgtcactgcactccagcctgggcaacaagagtgaaactctgtct--aaaaaaaaaacaaaaaa--acaatgaatggcagtttgttctgtcaatattaaagtgaattataaaactgttgaaaacagcacagagtggaactgttacaggaataaacaaattgataagtagcgcagaatagagagtacagaaacagCCA------TGTTTGTTTGGAAATGTAGCATGTTTATTAACTTATTCTACATGTGTTTAATGAACAACaggcattgtgcatagcataacaaccaaaacagtccatatccttgggtcaaagaggttatagtctagtgaggcggggcaagacaatcagccagaatagatgagtcaacatcattggaaattcgagaggagaaatattatggagaaaaaaacgttgaggaagaaagagaatgataggggtaacatgcagttttaagtacgtgatgtgcgtgatcctctctggtcaggaggcattgatgcaaaggtttgaaggaggacagagactatcctaggcagacatttggcagaaggacacccaggccatggaaccagcactgacctgtttctggatgggctagtacctggacagctagaggaacagagagaacagtgtgtctgCGtataatgagggtagcattctgaatgagtggaaagagaatgaacaactcaacaaatggttttggaacaaataaatgtctctttggaacttgtatattatctatcctaccctacaccatacacacacaaaaagagattctagatggattatggaactaaatgCAGTgacttccagttaaaggtggtgaattgagcaccttcatctatgctggatccttccccaaaacttagtaagatga i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83611983 1163 + 135191526 --aaaagaaaagaagaaaaaaggcccaataataggcaagaata-tttgaaaaagaggtacaatggccaggcatggtggctcacccctgtaatccaga-actttgggaggctgaggcaggtggatcacctgaggtcagaagttcgagaccggcctagccaatacggtgaaacccggtctcttcccaaa------------------------------------------------------------atacaaaacttagccaggcgtgatgacaggtgcctgtaatctcacttactcaggaggctg------------------------------------------------------------aggcaggagaatcacttgaacctgggaggtggaggctgcagtgagccgaggttacgtcactgcactccagcctgggtgacaagagtgaaactctgtct--aaaaaaaaaaaaaaaaaatacaatgaacggcagtttgttctgtcaatattaaggtgaattataaaactgttgaaaacagcaaagagtggaactgttacaggaataaacaaattgataagtagcgcagaatagagagtacagaaacagCCA------TATTTGTTTGGAAATGTAGCATGTTTATTAACTTATTCTACATGTGTTTAATGAACAACaggcattgtgcatagcataacaaccaaaacagtccatatccttgggtcaaagaggttatagtctagtgaggcggggcaagacaatcagccagaatagatgagtcaacatcattggaaattcgagaggagaaatattatggagaaaaaaacattgaggatgaaagagaatgataggtgtaacatgcaattttaagtacgtgaagtgcatgatcctctctggtcaggaggcattgatgcaaaggtttgaaggaggacagagactatcctaggcagacatttggcagaaggacacccagaccatggaaccagcactgacctgtttctggatgggctagtacctggcctgctagaggaacagagagaacagtgtgtctgCGtataatgagggtagcattctgaatgagtggaaagagaatgagcaactcaacaaatggttttggaacaaataaatatctctttggaacttgtatattatctatcctaccctacaccatacacacac-aaaagagattctagatggattatggaactaaatgCAGTgacttccagttaaagatggtgaattcagcaccttcatctatgctggctccttccccaaaacttagtaagatga i ponAbe2.chr9 C 0 C 0 s rheMac3.chr15 97567166 1157 + 112192347 agaaagagaaaaaagaaaaaaggcccaataataggcaagaatattttgaaaaagaggtacagtggccaggcgtggtggttcactcctacaatccaga-actttgggaggctgaggcgggtcaatcacctgaggtcaggagttcgagac---------------------------------------nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn------------------------------------------------------------nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn------------------------------nnnngttgcagtgagccgagatcacgtcactgcactccagcctgggcgacaagagtgaaactctgtct---aaaaaaaaaaaaaggt--acaatgaatggcaatttgttctgtcaatattgaggtgaattataaaactattgaaaacggaacagagtgaaactgttacaggaataaacaaattgataagtagtgcagagtagaaagtacaaaaacagCCATGTTTGTGTTTGTTTGGAAATGTGGCATGTTTATTAACTTATTCTACATGTGTTTAATGAACAACAGGCATTGCGCATagcataacaaccaaaacagtccatatccatggatcaaagaggttacagtctagtgaggcagggcaagacaatcagccaaaactgatgagtcaacatcataggaaattcgagaggagaaatattatggggaaaaaacc-ttgaggaagaaagagagtgataggggtaacatgcaattttaagtatgtgatgtgcatgatcctctctggtcaggaggcactgatgcaaaggcttgaaggaggacagagactatcctaggcagacatttggcagaaggacacccagg-tgtggaactagcactgacctgttcctggatgggctagtaccgggctcactagaggaacagcgagaatggagtgtctggG--TAAGGagggtagcattctgaatgaggagagagagaatgaacaactcaacaaatggttttggaacaaatgaatatctcttcagaacatgtatattatctatactactctacactggacacacacaaaaatagattctacatggattagggagctaaatgCAGTgacttccggttaaacatggtggattgagtgccttcatctatgtcggctccttccccaaaacttagtaagatga i rheMac3.chr15 C 0 I 1759 s macFas5.chr15 98789568 1167 + 112612857 agaaagagaaaaaagaaaaaaggcccaataataggcaagaatattttgaaaaagaggtacagtggccaggcgtggtggttcactcctacaatccaga-actttgggaggctgaggcgggtcaatcacctgaggtcaggagttcgagaccagcctagccaacacggtgaaacccgatctctattcaaa------------------------------------------------------------atacaaaacttagccaggtgtggtggcaggtgcctgtaatctcacctactcaagaggctg------------------------------------------------------------aggcaggagaatcacttgaacctgggaagtggaggttgcagtgagccgagatcacgtcactgcactccagcctgggcgacaagagtgaaactctgtct--aaaaaaaaaaaaaaggt--acaatgaatggcaatttgttctgtcaatattgaggtgaattataaaactattgaaaacggaacagagtgaaactgttacaggaataaacaaattgataagtagtgcagagtagaaagtacaaaaacagCCATGTTTGTGTTTGTTTGGAAATGTAGCATGTTTATTAACTTATTCTACATGTGTTTAATGAACAACAGGCATTGCGCATagcataacaaccaaaacagtccatatccatggatcaaagaggttacagtctagtgaggcagggcaagacaatcagccaaaactgatgagtcaacatcataggaaattcgagaggagaaatattatggggaaaaaacc-ttgaggaagaaagagagtgataggggtaacatgcaattttaagtatgtgatgtgcatgatcctctctggtcaggaggcattgatgcaaaggcttgaaggaggacagagactatcctaggcagacatttggcagaaggacacccagg-tgtggaactagcactgacctgttcctggatgggctagtacccggctcactagaggaacagcgagaatggagtgtctggG--TAAGGagggtagcattctgaatgaggagagagagaatgaacaactcaacaaatggttttggaacaaatgaatatctcttcagaacatgtatattatctatactaccctacactggacacacacaaaaatagattctacatggattagggagctaaatgCAGTgacttccggttaaacatggtggattgagtgccttcatctatgtcggctccttccccaaaacttagtaagatga i macFas5.chr15 C 0 C 0 s papAnu2.chr15 94501705 1152 + 107442819 agaaagagaaaaaagaaaaaaggcccaATAATAGgcaagaatattttgaaaaagaggtacagtggccaggtgtggtggttcactcctacaatccaga-actttgggaggctgaggcaggtcaatcacctgaggtcaggagttcgagaccagcctagccaacacggtgaaacccgatctctactcaaa------------------------------------------------------------atacaaaacttagccaggtgtggtggcaggtgcctgtaatctcacctactcaagaggctg------------------------------------------------------------aagcaggagaatcacttgaacctgggaagtggaggttgcagtgagccgagatcacgtcactgcactccagcctgggcgacaagagtgaaactctgtct--aaaaaaaaaaaaaaggt--acaatgaATGGCAATTTGTTCTGTCAATATTGAGGTGAATTACAAAACTATTGAAAACGGAACAGAGTGGAACTGTTACAGGAATAAACAAATTGATAAGTAGTGCAGAGTAGAAAGTACAAAAACAGccatgtttgtgtttgtttggaaATGTAGCATGTTTATTAACTTATTCTACATGTGTTTAATGAACAACAGGCATTGTGCATAGCATAACAACCAAAACAGTCCATATCCATGGATCAAAGAGGTTATAGTCTAGTGAGGCAGGGCAAGACAATCAGCCAAAACTGATGAGTCAACATCATAGGAAATTCAAGAGGAGAAATATTATGGGGAAAAAACc-ttgaggaagaaagagaatgataGGGGTAACATGCAATGTTAAGTACGTGATGTGCATGATCCTCTCTGGT---------------CAAAGGCTTGAAGGAGGACAGAGACTATCCTAGGCAGATATTTGGCAGAAGGACACCCAGG-CCTGGAACCAGCACTGACCTGTTCCTGGATGGGCTAGTACCTAGCTCGCTAAGGGAACGGCGAGAATGGTGTGTCTGGT--TAATGAGGGTAGCATACTGAATGAGGGGAGAGAGAATGAACAACTCAACAAATGGTTTTGGAACAAATGAATATCTCTTCGGAACATGTATATTATGTATCCTACCCTACACcggacacacacaaaaatagattGTACATGGATTAGGGAGCTAAATGCAGTGACTTCCGGTTAAAGATGGTGGATTGAGCGCCTTCATCTATGTCGGCTCCTTCCCCAAAACTTAGTAAGATGA i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 98713731 1166 + 108555830 agaaagagaaaaaaGAAAaaaggcccaataataggcaagaatattttgaaaaagaggtacagtggccaggcgtggtggttcactcctgtaatccaga-actttgggaggctgaggcgggtcagtcacctgaggtcaggagttcgagaccagcctagccaacacggtgaaactcggtctctactcaaa------------------------------------------------------------atacaaaacttagccaggtgtggtggcaggtgcctgtaatctcacctactcaggaggctg------------------------------------------------------------aggcaggagaatcacttttacctgggaggtggaggttgcagtgagctgagagcacgtcactgcactccagcctgggcgacaagagtgaaactctgtct---aaaaaaaaaaaaaggt--gcaatgaatggcaatttgttctgtcgatactgaggtgagttataaaactactgaaaacagcaccgagtggaactgttacaggaataaacaaattgataagtagtgcagagtagaaagtacaaaaacagCCATGTTTGTGTTTGTTTGGAAATGTAGCTTGTTTATTAAGTTATTCTACATGTGTTTAATGAACAACAGGCATTGTGCATagcataacaaccaaaacagtccatatccatggatcaaagaggttatagtctagtgaggcagggcaagacaatcagccaaaactggtgagtcaatatcatcggaaattggagaggagaaatattatggggaaaaaacc-ttgaggaagaaagagagtgataggggtaacatgcaattttaagtatgtgatgtgcacgatcctctctggtcaggaggcattggtgcaaaggcttgaaggaggacagagactatccgaggcagacatttggcagaaggacacccagg-tgtggaactagcactgacctgttcctggatgggctagtacctggctcactagaggaacggcgagaatggagtgtctggG--TAAGGagggtagcattctgaatgaggagagagagaatgaacaactcaacaaatggttttggaacaaatgaatatctcttcagaacatgtatattatctatcctaccctacacccgacacacacaaaaatagattctacatggattagggagctaaatgCAGTgacttccggttaaagatggtggattgagtgccttcatctatgttggctccttccccaaaacttagtaagatga i chlSab2.chr12 C 0 I 1739 s calJac3.chr1 77116219 1145 + 210400635 ---------ACAAAACAAaaatgcccaataataagcaagaatattttgaaaaagaggtacaatcgccaggcccggtggctcatgcctataatcccggtactttgggaggctgaggctgctcaatcacctgaggtcaggagtttgagaccagcctagccaacatggtgaaaccccatctctactcaaa------------------------------------------------------------atacaaaacttagctgggcattgtggtgcgtgcctgtaatttcagctactcgggaggctg------------------------------------------------------------aggcaggagaatcgcttgaccccgggaggcagaggttgcagtgagccaagactgtgccactgcactctagcctgggcacc--gagtgaaactctacctcaaaaaaaaaaaaaaaggg--aaaaagaaaggtgatttgttctgtcaatatcaaggtgaactataaaactactgataatagcacaaagtggaactgatacaggaataaac----tgacaagtagtgcaggatagaaagaacagaaacagCCA------TGTTTGTTTGGAAATGTAGCATGTTCATTAACTTATTCTACACATGTCTATTGAACAACAGTCATTGTGCATAGCATAACAACCAAaaaagtccatatccatgggtcaaggaggttatagtctagtgaggcggggcaagacaatcagcgaaaatagatgagtcaatgtcacaggagattagagaggagaaatactgtggggaaaaaca--ttgaggaacaaagaaaatgataggggtaacatgcaattttaagtatgtagtgtgcacgattctctctagtcaggaggtattgatgcaaaagtttgaagaagaacagagactctcctaggcagacgtctggcagaagg--aaccaggccatggaaccagcagtgacctgttcctggatgggctagtacctggcctgcttgaggaacagtgagaaCCACATCTCTGAGTATAATGTGCGTTGCATTCTGAATGagtggagagagaatgaacgactcaac-aatggttttggaacaaatgaatatctctttggaacatgtatattatctatcctaccctacgccatacacacacaaaaatagactgta---ggattcgggaactaaatgAAGTgacttccaattaaagatggtggattgagcaccttcatctatgttggctccttccccaaaacttagtaagatga i calJac3.chr1 C 0 C 0 e nomLeu3.chr1a 76125218 0 - 122973662 C a score=3159.000000 s hg38.chr9_GL383542v1_alt 37521 3 + 60032 cag s panTro4.chr9 86981154 3 + 137840987 cag i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83613146 3 + 135191526 cag i ponAbe2.chr9 C 0 C 0 s macFas5.chr15 98790735 3 + 112612857 tag i macFas5.chr15 C 0 I 1735 s papAnu2.chr15 94502857 3 + 107442819 TAG i papAnu2.chr15 C 0 I 244 s calJac3.chr1 77117364 3 + 210400635 tag i calJac3.chr1 C 0 I 552 e chlSab2.chr12 98714897 1739 + 108555830 I e rheMac3.chr15 97568323 1759 + 112192347 I e nomLeu3.chr1a 76125218 0 - 122973662 C a score=121817.000000 s hg38.chr9_GL383542v1_alt 37524 460 + 60032 gatgtagcaggacaagccgcacacaaaacccctcacacaccgagttaaagaaggaagggcttttttcagctgggagctttggcaagactcacaactccaaaaaccaagctccccaagtgagcaattgctgtccgttttaagggcttacaactctaagggggtccgcgtgagaggatcctgatcaattgagcaagcagtgggtatgtgactgggggatgcatgctctggtaatcagaacggaacagaacaggacagggattttcacagtgcttttctatacaatgtctggaatctataggtaacataaccggttaggccaggggtcgatctttaaccaggcccaccacgcagcaccaggctgtctgcctgtggatttcatttctgccttttagtctttacttctt---tttttggaggcagaaattgggcataagacaatatgaggggtggtctcctcccttaa s panTro4.chr9 86981157 459 + 137840987 GAtgtagcaggacaagccacacacaaaacccctcacacaccgagttaaagaaggaagggcttttttcagctgggagctttggcaagactcacatctccaaaaaccaagctccccaagtgagcaattcctgtcccttttaagggcttacaactctaagggggtccacgtgagagggtcctgatcaattgagcaagcagggggtatgtgactgggggatgcatgctctggtaatcagaacagaacagaacaggacagggattttcacagtgcttttctatacaatgtctggaatctataggtaacataaccggttaggccaggggtcgatctttagccaggcccaccacgcagcaccaggctgtctgcctgtggatttcatttctgccttttagtctttacttc-t---tttttggaggcagaaattgggcataagacaatatgaggggtggtctcctcccttaA i panTro4.chr9 C 0 M 730 s ponAbe2.chr9 83613149 463 + 135191526 gatgtagcaggacaagctgcacacaaaacccctcaaacaccgagttaaagaaggaagggctttatttagctgggagctttggcaagactcacatctccaaaaaccaagctccccaagtgagcaattcctgtcccttttaagggcttacaactctaagggggtccgcgtgagagggtcatgatcaattgagcaagcagggggcatgtgactgggggatgcatgctctggtaatcagaacagaacagaacaggacagggattttcacaatgcttttctatacaatgtctggaatctataggtaacataaccggttaggccagaggtcgatctttaaccaggcccagggtgcagcaccgggctgtctgcctgcggatttcatttctgccttttagtttttacttcttctatttttggaggcagaaattgggcataagacaatatgaggggtggtctcctcccttaa i ponAbe2.chr9 C 0 C 0 e calJac3.chr1 77117367 552 + 210400635 I e chlSab2.chr12 98714897 1739 + 108555830 I e papAnu2.chr15 94502860 244 + 107442819 I e macFas5.chr15 98790738 1735 + 112612857 I e rheMac3.chr15 97568323 1759 + 112192347 I e nomLeu3.chr1a 76125218 0 - 122973662 C a score=1196.000000 s hg38.chr9_GL383542v1_alt 37984 15 + 60032 ggagatttttctttg s ponAbe2.chr9 83613612 15 + 135191526 ggagatttttctttt i ponAbe2.chr9 C 0 C 0 e calJac3.chr1 77117367 552 + 210400635 I e chlSab2.chr12 98714897 1739 + 108555830 I e papAnu2.chr15 94502860 244 + 107442819 I e macFas5.chr15 98790738 1735 + 112612857 I e rheMac3.chr15 97568323 1759 + 112192347 I e nomLeu3.chr1a 76125218 0 - 122973662 C e panTro4.chr9 86981616 730 + 137840987 M a score=140731.000000 s hg38.chr9_GL383542v1_alt 37999 532 + 60032 taaagacataaacttacaaagagacaacaacaaaatatttggaaggtagaaagcagaaggatgcatagaagttggcttagcagaacctggaaggctgagttttgtgacagcagtgggaaagtccaagaggcacctgacttaaaatccagaatccccaatggctcagaaatggtgaacgccatggacctccaggaggaaaggagaagagtgggctataaatcagaaggCTGGCTTCAGATCttttttttttt---agacagagtcttgctctgttgcccaggctggagtgcagtggcacgatctcggctcactgcaagctccgcttcctgggttcatgccattctcctgcttcagcctcctgagtggctgggactacaggcacccgccaccacgtgtggctaattttttgtattttttagtagagacggggtttcaccgtgttagccaggatggtctcaatctcctgacctcatggtccgcccacctcggcctcccaaagtgctgggattacaggcgtgagccacc---gcgccgggcA s panTro4.chr9 86982346 535 + 137840987 TAAAGACATAAACTTCCAaagagacaacaacaaa-tatttggaaggtagaaaccagaaggatgcatagaagttggcttagcagaacctgaagggctgagttttgtgacagcagtgggaaagtccaagaggggtctgacttaaaatccagaatccccaatggctcagaaatggtgaacgccatggacctccaggaggaaaggagaagagtgggctataaatcagaaggCTGGCTTCAGATCttttttttttt--tagacagagtcttgctctgttgcccaggctggagtgcagtggcacgatctcggctcactgcaagctccgtctcctgggttcatgccattctcctgcttcagcttcctgagtagctgggactacaggcacccaccaccacgtgcggctaattttttgtattttttagtagagacggggtttcaccatgttagccaggatggtctcaatttcctgacctcatgatccgcccacctcggcctcccaaagtgctgggattacaggcatgagccaccaccgcgccgggcA i panTro4.chr9 M 730 C 0 s ponAbe2.chr9 83613627 535 + 135191526 taaagacataaacttacaaagagacaacaacaaaatatttggaaggtagaaagcagaaggatgcatagaagttggcttagcagaacctggaaggctgagttttgtgacagcaatgggaaagtccaagaggcgcctgacttaaaatccagaacccccaacggctcagaaatggtgagcaccatggacctccaggaggaaaggagaagagtgggctataaatcagaaggctggcttcaaaTCttttttttttttttagacagagtcttgctctgttgcccaggctggagtgcagtggcacgatctcggctcactgtaagctccacctcctgggttcacgccattctcctgcctcagcctcctgagtagctgggactacaggcacccgccaccacgtgtggctaattttttgtattttttagtagagatggggtttcaccgtgttagccaggatggtctcaatctcctgacctcatgatccgcccacctcggcctcccaaagtgctgggattacaggcgtgagccacc---acactgggcA i ponAbe2.chr9 C 0 C 0 e calJac3.chr1 77117367 552 + 210400635 I e chlSab2.chr12 98714897 1739 + 108555830 I e papAnu2.chr15 94502860 244 + 107442819 I e macFas5.chr15 98790738 1735 + 112612857 I e rheMac3.chr15 97568323 1759 + 112192347 I e nomLeu3.chr1a 76125218 0 - 122973662 C a score=21720.000000 s hg38.chr9_GL383542v1_alt 38531 42 + 60032 GCTTCAGATCTTTTTAAGGAGTTTCACAAACAGATT-CTATCC s panTro4.chr9 86982881 43 + 137840987 GCTTCAGATCTTTTTAAGGAGTTTCACAAACAGATTTCTATCC i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83614162 42 + 135191526 GCTTCAGATCTTTTTAAGGAGTTTCACAAACAGATT-CTATCC i ponAbe2.chr9 C 0 C 0 s papAnu2.chr15 94503104 42 + 107442819 GCTTCAGATCTCTTTAAGGAGTTTCACAAACAGATC-CTATCC i papAnu2.chr15 I 244 I 252 e calJac3.chr1 77117367 552 + 210400635 I e chlSab2.chr12 98714897 1739 + 108555830 I e macFas5.chr15 98790738 1735 + 112612857 I e rheMac3.chr15 97568323 1759 + 112192347 I e nomLeu3.chr1a 76125218 0 - 122973662 C a score=27595.000000 s hg38.chr9_GL383542v1_alt 38573 112 + 60032 tgccaagaccagctcggttggggagaccctaacccagc-tcagtagaggaattaaagaca-acacatacagaaatatagaggtgtggagtgggaaatcaggggtctcacagcct s panTro4.chr9 86982924 113 + 137840987 tgccgagaccagcttggttggggagaccctaacccagc-gcaatagaggaattaaagacacacacacacagaaatatagaggtgtggagtgggaaatcaggggtctcacagcct i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83614204 112 + 135191526 tgccgagacaagctcggttggggagaccctaacccagcagcactagaggaattaaagac--acacacacagaaatatagaggtgtggagtgggaaatcaggggtctcacagcct i ponAbe2.chr9 C 0 M 534 e calJac3.chr1 77117367 552 + 210400635 I e chlSab2.chr12 98714897 1739 + 108555830 I e papAnu2.chr15 94503146 252 + 107442819 I e macFas5.chr15 98790738 1735 + 112612857 I e rheMac3.chr15 97568323 1759 + 112192347 I e nomLeu3.chr1a 76125218 0 - 122973662 C a score=38462.000000 s hg38.chr9_GL383542v1_alt 38685 444 + 60032 tcagaactgagagccctgaacagagatttacccatgtatttattgacagcaagccagtgataagcattgattctatagattatagattaactaaaagtattccttacaggaaacaaagggatgggccaaagtaaagggatgggtctagctagttacctgcagcaggagcatgtccttaaggcacagatcactcatgctattgtttatggtttaagaacacctttaaggccaggcctggtggctcacgcctgtaatcccagcactttgggaggctgaggcgggcagatcaagaggtcaggagatcgagaccatcctggctaaaatggtgaaaccccatctctgctaaaaatacaaaaaaaaaaaaaaa-tagccgggcatggtggtggacacctgtagtcccagctactcgggaggctgagccaggagaatggcttgaacccgggg s panTro4.chr9 86983037 433 + 137840987 tcagaactgagagccctgaacagagattta------------ttgacagcaagccagtgataagcattgattctgtagattataaattaactaaaagtattccttacaggaaacaaagggatgggccaaagtaaagggatgggtctagctagttacctgcagcaggagcatgtccttaaggcacagatcactcatgctattgtttatggtttaagaacacctttaaggccaggcatggtggctcacgcctgtaatcccagcactttgggaggctgaggcgggcagatcacgaggtcaggagattgagaccatcctggctaaaatggtgaaaccccgtctctgctacaaatacaaaaaaaaaaaaaaaacagccgggcgtggtggtggacgcctgtagtcccagctactcgggaggctgagccaggagaatggcttgaacccgggg i panTro4.chr9 C 0 C 0 e calJac3.chr1 77117367 552 + 210400635 I e chlSab2.chr12 98714897 1739 + 108555830 I e papAnu2.chr15 94503146 252 + 107442819 I e macFas5.chr15 98790738 1735 + 112612857 I e rheMac3.chr15 97568323 1759 + 112192347 I e nomLeu3.chr1a 76125218 0 - 122973662 C e ponAbe2.chr9 83614316 534 + 135191526 M a score=21468.000000 s hg38.chr9_GL383542v1_alt 39129 88 + 60032 ggcagagcttgcagtgagccgagatcgtgccactgcactccagcctgggcatcagagtgagacttcgtctcaaaaaaaaaac-aaaaac s panTro4.chr9 86983470 83 + 137840987 ggcagagcttgcagtaagccaagatcgtgccactgcactccagcctaggcatcagagtgagacttcgtctcaaaaaaaaaaC------C i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83614850 89 + 135191526 ggcagagcttgcagtgagccaagatcgtgccactgcactccagcctgggcatcagaatgagactccgtctcaaaaaaaaaaccaaaaac i ponAbe2.chr9 M 534 C 0 e calJac3.chr1 77117367 552 + 210400635 I e chlSab2.chr12 98714897 1739 + 108555830 I e papAnu2.chr15 94503146 252 + 107442819 I e macFas5.chr15 98790738 1735 + 112612857 I e rheMac3.chr15 97568323 1759 + 112192347 I e nomLeu3.chr1a 76125218 0 - 122973662 C a score=104360.000000 s hg38.chr9_GL383542v1_alt 39217 129 + 60032 aaaaCAGGGATTCCTCCAACAAGACAATTCCTTCAGACTACCATACTGTGTGAAAGTCGCCGTGCACAAAAACctcttaaatatcaccagacagccaaaa-tcacaggacatttggagaaacccactaag s panTro4.chr9 86983553 130 + 137840987 AAAACAGGGATTCCTCCAACAAGACAATTCCTTCAGACTACCATACTGTGTGAAAGTCGCCGTGCACAAAAACctcttaaatatcaccagacagccaaaaatcacaggacatttggagaaacccactaag i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83614939 130 + 135191526 aaaaCAGGGATTCCTCCAACAAGACAATTCCTTCAGACTACCATACTGTGTGAAAGTCACTGTGCACAAAAACctcttaaatatcaccagatagccaaaaatcacaggacatttggagaaacccactaaa i ponAbe2.chr9 C 0 C 0 s papAnu2.chr15 94503398 130 + 107442819 AAAACAGGGATTCCTCCGACGAGACAATTCATTCAGCCTACCATACTGTGTGAAAGTTGCTGTGCACAAAAAACTCTTAAATATCACCAGAGAGCCAAAAATCACAGGACGTTTGGAGAAACCCACTAAG i papAnu2.chr15 I 252 C 0 s calJac3.chr1 77117919 130 + 210400635 AAAACAGGGTTTCCTCTGACGAGATGATTCATTCAGACCACCATACTGTGTGAAAGTCAGTGTGCACAAAAAactgttaaatatcagcagacagccaaaaatcataggacatttggagaaactcagtaag i calJac3.chr1 I 552 C 0 e chlSab2.chr12 98714897 1739 + 108555830 I e macFas5.chr15 98790738 1735 + 112612857 I e rheMac3.chr15 97568323 1759 + 112192347 I e nomLeu3.chr1a 76125218 0 - 122973662 C a score=237061.000000 s hg38.chr9_GL383542v1_alt 39346 208 + 60032 gtgattgatgggaagaagtaaac---agaaggctg--tgggaagaaacagaggctgtgtaggaaaaagaaagatttagaaaatcattaatatcaggccaggagtggtggctcacacctgtaatcccagcactttgggagactgaggtgggtggatcacgatgtcaggagttcgagaccagcctgaccaacatggtgaaaccccgtctgtactt s panTro4.chr9 86983683 208 + 137840987 gtgattgatgggaagaagtaaac---agaaggctg--tgggaagaaacagaggctgtgtaggaaaaagaaacatttagaaaatcattaatatcaggccagcagtggtggctcacgcctgtaatcccagcactttgggagaccgaggcgggtggatcacgaggtcaggagttcaagaccagcctgaccaacatggtgaaaccccgtctgtattt i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83615069 208 + 135191526 gtgattgatgggaagaagtaaacag-agaaggatgactgggaagaaacagaggctgtgtaggaaaaag----atttagaaaatcattaatatcaggccaggactggtgactcacgcctgtaatcccagcactttgggaggctgaggcgggcggatcatgagttcaggagttcaagaccagcctgaccaacatggtgaaaccccgtctctactt i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76125218 212 - 122973662 GTGATTGATGGGAAGAAGTAAACAG-AGAAGGATGACTGGGAAGAAACAGAGGCTGTGTAGGAAAAAGAAAGTTTTAGAAAATCATTAATATCAAAccaggagcggtggctcacgcctgtaatcccagcactttgggagtccgaggcgggcagatcacgaggtcaggagttcgagaccagcctgaccaacatggtgaaaccctgtctctactt i nomLeu3.chr1a C 0 C 0 s papAnu2.chr15 94503528 212 + 107442819 GTGATTGATGGGAAGAAGTAAACAG-AAAAGGATGACTGGGAAGAAACAGAGGCTGTGTAGGAAAAAGAAAGCTTTAGAAAATCATTAATatcaggccgggagcagtggctcaggcccgtaatcccaccactttgggaggccgaggcgtgcggatcacgaggtcaggagttcgagaccagcctgagcaacatggtgaaaccccatctctacta i papAnu2.chr15 C 0 C 0 s calJac3.chr1 77118049 209 + 210400635 gtgattgatgggcagaagtaaacagaaaaaggatgactgggaagaaatacaggctgtgt---aaaaagaaagctttagaaaatcattaatatcAggttggacatggtggttcgtgcctgtaatcccagcactttgggaggctgaggcaggcagatcacaaggtcaggagtttgagaccagtctgaccaacatggtgaaaccccatctctact- i calJac3.chr1 C 0 C 0 e chlSab2.chr12 98714897 1739 + 108555830 I e macFas5.chr15 98790738 1735 + 112612857 I e rheMac3.chr15 97568323 1759 + 112192347 I a score=2730.000000 s hg38.chr9_GL383542v1_alt 39554 2 + 60032 aa s panTro4.chr9 86983891 2 + 137840987 aa i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83615277 2 + 135191526 aa i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76125430 2 - 122973662 aa i nomLeu3.chr1a C 0 C 0 s papAnu2.chr15 94503740 2 + 107442819 aa i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 98716636 2 + 108555830 AA i chlSab2.chr12 I 1739 C 0 e calJac3.chr1 77118258 0 + 210400635 C e macFas5.chr15 98790738 1735 + 112612857 I e rheMac3.chr15 97568323 1759 + 112192347 I a score=4242.000000 s hg38.chr9_GL383542v1_alt 39556 2 + 60032 aa s panTro4.chr9 86983893 2 + 137840987 aa i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83615279 2 + 135191526 aa i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76125432 2 - 122973662 aa i nomLeu3.chr1a C 0 C 0 s macFas5.chr15 98792473 2 + 112612857 AA i macFas5.chr15 I 1735 C 0 s papAnu2.chr15 94503742 2 + 107442819 aa i papAnu2.chr15 C 0 I 2 s chlSab2.chr12 98716638 2 + 108555830 AG i chlSab2.chr12 C 0 C 0 s calJac3.chr1 77118258 2 + 210400635 aa i calJac3.chr1 C 0 C 0 e rheMac3.chr15 97568323 1759 + 112192347 I a score=19757.000000 s hg38.chr9_GL383542v1_alt 39558 13 + 60032 aaaaaaaaaatac s panTro4.chr9 86983895 12 + 137840987 aaaaaaaaa-tac i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83615281 9 + 135191526 aaaaaaaaa---- i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76125434 13 - 122973662 aaaaaaaaaaaaa i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 97570082 13 + 112192347 AAAAAaaaaatag i rheMac3.chr15 I 1759 C 0 s macFas5.chr15 98792475 13 + 112612857 GAAAAaaaaatag i macFas5.chr15 C 0 C 0 s papAnu2.chr15 94503746 11 + 107442819 aaaaaaaaaat-- i papAnu2.chr15 I 2 I 854 s chlSab2.chr12 98716640 13 + 108555830 AAAAAaaaaatag i chlSab2.chr12 C 0 C 0 s calJac3.chr1 77118260 13 + 210400635 aaaacaaaaacac i calJac3.chr1 C 0 C 0 a score=3654184.000000 s hg38.chr9_GL383542v1_alt 39571 1247 + 60032 aaaaattagccaggtgtggtggcacacgcctgtaatcccagctactcaggaagctgagg-------caggagaatcacttaaatctgggaggccgaggttgcagtgagctgagatcacaccactgcatgccagcctgggtgacagagcgagactctgtctcagaaaaaaa--aaaaaa-------gaaaagaaaattattaatatcctcagaaacaaaacaaaaaaCCAAAACCTTAGAAATAAGCCATAACAAAGGAGCTGATAGAGAACCATAAATTTAAAATATATCAGAAAAGTCACACTagatttatatatttgacaacattgaaactaagaacttctgttcatcaaaacacaccatcacaggagtgagaggcagctgacagagtaaaagacaatatctgcaattttatatccaatgaagtacttgtatccagaatatatga---agaacttctacaaacaaattttaaaaaaatggaaagccaataaaaaattgggcaaaagtttgaacaggtgctttacaaaggagaatattctgatgggtatgaaaggtactcagctttaggaaaatgtaattagagccacgataatattccatcaacccgaacagctaaagtgaagaacaaac-aaacaataccaagg---------------------------actctcatacactactggagggagtgtaaattggtaaaacccgtttttggaaaatcatttggcaacatcccctaattctgaacatatgagtactctataacccagtagttccactactaggtatatatctagc--agagatgcacatatatgtaaaccaaaagacatgtgcaagaattatcacagcagcactatccataaaaattggaatcaattgtctatcagcagcagaatgaacaagtgcattgtggtttattcacacaatagaataccatgcggacaagaaaacaaacACAAGtgtcttagtctgctttatgctgctataacagaataccacagactggataatttataatgaaaa-aaatatatttggctcaaagttctggaggctaggaagtccaagattgaaagactacatctggtgagggccctcttgctgtgtcataacatgatggaggAGATTGTCATTCTGTTGCTGATAGACAAGCGAtttactggctttccatctttttaaaatttatttgtagaagttctttatatatgctggatacaagtacttccttggataaaaaattgcaaatattttctgttattctgttgtctgcctctcactcctgtgatgg s panTro4.chr9 86983907 1242 + 137840987 aaaacttagccaggtgtggtggcacacgcctgtaatcccagctactcaggaagctgagg-------caggagaatcacttaaacctgggaggcggaggttgcagtgagccgagatcacaccactgcatgccagcctgagtgacagagcaagactctgtctcagaaaaaaa--aaaaaa---------aaagaaaattatta---tcctcagaaaCAAAACAAAAAACCAAAACCTTAGAAATAAGCCATAACAAAGGAGCTGATAGAGAACCATAAATTTAAAATATATCAGAAAAGTCACACTagatttatatatttgacaacattgaaactaagaacttccgttcatcaaaacacaccatcacaggagtgagaagcagctgacagagtaaaagacaatatctgcaattttatatccaatgaagtacttgtatccagaatatatga---agaacttctacaaacaaattttaaaaagatggaaagccaataaaaaattggacaaaagtttgaacaggtgctttacaaaggagaatattctgatggttatgaaaggtactcagctttaggaaaatgtaattagagccacgataatattccatcaacccgaacagctaaagtgaagaacaaac-aaacaataccaagg---------------------------actctcatacactactggaggaagtgtaaattggtaaaacctgtttttggaaaatcatttggcaacatcccctaattctgaacatatgagtactctataacccagtagttccactactaggtatatatctagc--agagatgcacatatatgtaaaccaaaagacatgtgcaagaattatcacagcagcactatccgtaaaaattggaatcaattgtctatcagcagcagaatgaacaagtgcattgtggtttattcacacaatagaataccatgcggacaagaaaacaaacACAAGtgtcttagtctgctttatgctgctataacagaataccacagactggataatttataatgaaaa-aaatatatttggctcaaagttctggaggctaggaagtccaagattgaaagactacatctggtgagggccctcttgctgtgtcataacatgatggaggAGATTGTCATTCTGTTGCTGATAGACAAGCGAtttagtggctttccatctttttaaaatttatttgtagaagttctttatatatgctggatacaagtacttccttggatataaaattgcaaatattttctgttattctgttgtctgcctctcactcctgtgatgg i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83615290 1246 + 135191526 aaaaattagccaggtgtggtggcacatgcctgtaatcccagctactcaggaagctgagg-------caggagaatcacttaaacctgggaggtggaagttgcagtgagccgagatcacaccactgcatgtcagcctgggtgacagagcgagactctgtctcagaaaaaaa--aaaaga---------aaagaaaattattaatagcctcagaaacaaaacaaaaaaCCAAAACCTTAGAAATAAGCCATAACAAAGGAGCTGATAGAGAACCATAAATTTAAAATATATCAGAAAAGTCACACTGGatttatatatttgacaacattgaaactaagaacttctgttcatcaaaacacaccatcacaggagtgagaggcagctgacagagtaaaagacaatatctgcaattttatatccaacgaagtacttgtatccagaatatatga---agaacttctacaaacaaattttaaaaagatggaaagccaataaaaaattgggcaaaagtttgaacaggtgctttacaaaggagaatattctgatgggtatgaaaggtactcagctttaggaaaatgtaattagagccacaataatattccatcaaccagaacagctaaagtgaagaaaaaac-aaacaataccaagg---------------------------actctcatacactactggagggagtgtaaattggtaaaacctgtttttggaaaatcatttggcaacatcccctaattctgaacacatgagtactctataacccagtagttccactactaggtatatatctaat--agagatgcacatatatgtaaaccaaaagacatgtgcaagaatgatcacagcagcactattcataaaaattggaatcaattgtctatcagcagcagaatgaacaaatgcattgtggtatattcacacaatagaataccatgcggacaagaaaacaaacACAAGtgtcttagtctgctttatgctgctataacagaataccacagactggataatttataatgaaaagaaatatatttggctcacagttctggaggctaggaagtccaagattgaaagactacttccggtgagggctctcttgcggtgtcataacatggtggaggAGATTGTCATTCTGTTGCTGATAGACAATTGGtttactggctttccatctttttaaaatttatttgtagaagttctttatatatgctggatacaagtacttccttggatataaaattgcaaatattttctgttactctgttgtctgcctctcactcctgtgatgg i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76125447 1275 - 122973662 aaaaattagccaggtgtggtggcacatgcctgtaatcccagctactcaggaagctgagg-------caggagaatcacttaaacctgggaggtggaggttgcagtgagccgagatcgcaccactgcatgccagcctgggtgacagagcgagactctgtctcacaaaaaaa--aaaaaa------agaaaagaaaaTTATTAACATCCTCAGAAACAAAACAAAAAACCAAAACCTTAGAAATAAGCCATAACAAAGGAGCTGATAGAGAACCATAAATTTAAAATATATCAGAAAAGTCACACTagatttatatatttgacaacattgaaactaagaacttctgttcatcaaaacataccatcacaggagtgagaggcagctgacagagtaaaaaaaaatatttgcaattttatatccagtgaagtacttgtatccagaatatatga---agaacttctacaaacaaattttaaaaagatggaaagccaattaaaaattgggcaaaagtttgaacaggtgctttacaaaggagaatattctgatgggtatgaaaggtattcagctttaagaaaatgtaattagagccacaataatattccatcaaccagaacagctaaagtgaagaacaaac-aaacaataccaaggattagtgagagtgttaaagcaacctgaactctcatacactactggagggagtgtaaattggtaaaacccctttttggaaaattatttggcaacatcccctaattctgaatgtatgagtactctataacccaacagttccactactacgtatatatctaac--agagatgcatatgtatgtaaaccaaaag-catgtgcaagaatgatcacagcagcactatccataaaaattggaatcaattgtctatcagcagcagaatgaacacatgcattgtggtatgttgacacaatagaataccatGTGCACAAGACAACAAACACAAGtgtcttagtctgctttatattgctataacagaataccacagactgggtaatttataatgaaaagaaatatatttggcttacagttctggaggctaggaagttcaagattgagagactacatctggtgagggccctcttgctgtgtcataacatggtggaggAGATTGTCATTCTGTTGCTGATAGACAATTGAtttactggctttctatctttttaaaatttatttggagaagttctttatatatgctggatacaagtacttccttggatataaaattgcaaatgttttctgttactctgttgtctgcctctcactcctgtgatgg i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 97570095 1270 + 112192347 aaaaattagctcggtgtggtggtacatgcctgtaatcccagctactcaggaggctgaggcaggagacaggagaatcgcttaaacctgggaggcagaggttgcagtgagccaagcttgcaccactgcatgtcagcctgggtgacagagcaagactccgtctcagaaaaaga----aaaa---------agaaaaaaGTATTAATATCCTCAGAAACAAAACAAAAAACCGAAACCTTAGAAATAAGCAATAACAAAAGAGCTGACAGAGAACCATGAATTTAAAATATATCAGAAAAGTCACACTACatttatatatttgacaacattaaaactaagaacttgtgtttatcaaaacacaccatcacaggagtgagaagcagatgacagagtaacaggaaatatttgcaattttatgtccaatgaagtacttgtatccagaatatatga---agaacttctacaaataaattttaaaaagatggaaagtcaataaaaaatggggcaaaa-tttgaacaggtgctttacaaaggagaatattctgatgggtatgaaaggtactcagctttaggaaaatgtaattagaaccacagcaatactccatcaaccagaacagcgaaagtgaagaacaaacaaaacaataccaaggattagtgagagtgttaaagcaatctgaactctcatacactactggagggagtataaattggtaaaaccccgttttggaaaatcatttggcaacatctgctaattctgaacatatgagtactctataacccaatagttccactactaggtatatatctaac--agagatgcacatatatgtaaaccaaaagacatgtgcaagaaggatcacagcagcactatccataaaaattggattcaattgtctatcagcagcagaatgaacgaatgcactgtggtatattcacacaacagaataccatgcagataagaCAACAAACACAAGtgtcttagtctgctttatgctgctgtaacagaataccacagactgaataatttataaggaaaagaaatatatttgactcacagttctggaggctaggaagtccaagatagagagacctcatctggtgagggccttcttgctgtgtcataatatggtggagggTATTGTCATTCTGTTGCTGATAGACAattgatttactggctttccattt--------tttatgtgtagaagttctttatatatgctggatacaagtatttccttggatataaaattgcaaatattttctgttactctgtcatctgcttctcactcctgtgatgg i rheMac3.chr15 C 0 I 2 s macFas5.chr15 98792488 1263 + 112612857 aaaaattagctcggtgtggtggtacatgcctgtaatcccagctactcaggaggctgagg-------caggagaatcgcttaaacctgggaggcagaggttgcagtgagccaagcttgcaccactgcatgtcagcctgggtgacagagcaagactccgtctcagaaaaaaa----aaaa---------agaaaaaaGTATTAATATCCTCAGAAACAAAACAAAAAACCGAAACCTTAGAAATAAGCAATAACAAAAGAGCTGACAGAGAACCATGAATTTAAAATATATCAGAAAAGTCACACTACatttatatatttgacaacattaaaactaagaacttgtgtttatcaaaacacaccatcacaggagtgagaagcagatgacagagtaacagaaaatatttgcaattttatgtccaatgaagtacttgtatccagaatatatga---agaacttctacaaataaattttaaaaagatggaaagtcaataaaaaatggggcaaaa-tttgaacaggtgctttacaaaggagaatattctgatgggtatgaaaggtactcagctttaggaaaatgtaattagaaccacagcaatactccatcaaccagaacagctaaagtgaagaacaaacaaaacaataccaaggattagtgagagtgttaaagcaatctgaactctcatacactactggagggagtataaattggtaaaaccccgttttggaaaatcatttggcaacatctgctaattctgaacatatgagtactctataacccaatagttccactactaggtatatatctaac--agagatgcacatatatgtaaaccaaaagacatgtgcaagaaggatcacagcagcactatccataaaaattggattcaattgtctatcagcagcagaatgaacaaatgcactgtggtatattcacacaacagaataccatgcagataagaCAACAAACACAAGtgtcttagtctgctttatgctgctgtaacagaataccacagactgaataatttataaggaaaagaaatatatttgactcacagttctggaggctaggaagtccaagatagagagacctcatctggtgagggccttcttgctgtgtcataatatggtggagggTATTGTCATTCTGTTGCTGATAGACAattgatttactggctttccattt--------tttatgtgtagaagttctttatatatgctggatacaagtatttccttggatataaaattgcaaatattttctgttactctgtcatctgcctctcactcctgtgatgg i macFas5.chr15 C 0 I 2 s papAnu2.chr15 94504611 1265 + 107442819 aaaaattagctgggtgtggtggtacatgcctgtaatcccagctactcaggaggctgagg-------caggagaatcgcttaaacctgggaggcagaggttgcagtgagccaagattgcacctctgcatgtcagcctgggtgacagagcaagactccgtctcagaaaaaaa--agaaaa---------agaaaaaagtattaatatcctcagaaacaaaacaaaaaaccgaaaccttagaaaTAAGCAATAACAAAAGAGCTGACAGAGAaccatgaatttaaaatatatcagaaaagtcacaatacatttatatatttgacAACATTAAAACTAAGAACTTGTGTTTATCAAAACACACCATCACAGGAGTGAGAAGCAGATGACAGagtaacagaaaatatttgcaattttatGTCCAATGAAgtacttgtatccagaatatatga---agaacttctacaaataaattttaaaaagatggaaagtCAATAAAAAATGGGGCAAAA-TTTGAACAGGTGCTTTACAAAGGAGAATATTCTGATGGGTATGAAAGGTACTCAACTTTAGGAAAATGTAATTAGAACCACAGCAATACTCCATCAACCAGAACAGCTAAAgtgaagaacaaacaaaacaataccaAGGATTAGTGAGAGTGTTAAAGCAATATGAATTCTCATACACTACTGGAGGGAGTATAAATTGGTAAAACCCCTTTTTGGAAAATCATTTGGCAACATCTGCTAATTCTGAACATATGAGTACTCTATAACCCAATAGttccactactaggtatatatctaAC--AGAGATGCACATATATGTAAACCAAAAGACATGTGCAAGAAGGATCACAGCAGCACTATCCATAAAAATTGGATTCAATTGTCTATCAGCAGCAGAATGAACAAATGCactgtggtatattcacacaacAGAATACCATGCAGATAAGACAACAAACACAAGTGTCTTAGTCTGCTttatgctgctgtaacagaataccacagactgaataatttataaggaaaagaaatatattttactcacagttctggaggctaggaagtccaagatagagagacctcatctggtgagggccttcttgctgtgtcataatATGGTGGAGGGTATTGTCATTCTGTTGCTGATAGACAATTGATTTACTGGCTTTCCATTT--------TTTAtgtgtagaagttctttatatatgctgGATACAAGTATTTCCTTGGAtataaaattgcaaatattttctgttactCTGTCATCTGCCTCTCACTCCTGTGATGG i papAnu2.chr15 I 854 I 2 s chlSab2.chr12 98716653 1267 + 108555830 aaaaattagctgggtgtggtggtacatgcctgtaatcccagctactcaggaagctgagg-------caggagaatcacttaaacctgggaggcagaggttccagtgagccaagatcgcaccactgcatgtcagcctgggtgacagagcaagactccatctcaggaaaaaaaaaaaaga---------agaaaaaaCTATTAATATCCTcagaaacaaaacaaaaaaccaaaaccttagaaataagcaataacaaaaGAGCTGACAGAGAACCATAAATTTAAAATATATCAGAAAAGTCACACTACatttatatatttgacaacattaaaactaagaacttgtgtttatcaaaacacaccatcacaggagtgagaagcagatgacagagtaacagaaaatatttgcaattttatgtccaatgaagtacttgtatccagaatatatga---agaacttctacaaataaattttaaaaagatggaaagtcaataaaaaatggggcaaaa-tttgaacaggtgctttacaaaggagaatattctgatgggtatgaaaggtactgagctttaggaaaatgtaattagaaccacagcaatactccatcaaccagaacagctaaagtgaagaacaaacaaaacaataccaaggattagtgagaatgttaaagcaatctgaactctcatacactactggagggagtataaattggtaaaaccgctttttggaaaatcatttggcaacatctgctaattctgaacatatgagtactctataacccaatagttccactactaggtatatatctaac--agagatgcacatatatgtaaatcaaaagacatgtgcaagaaggatcacagcagcactatccataaaaattggattcaattgtctatcagcagcagaatgaacaaatgcactgtggtatattcacccaacagaataccatgcagataagaCAACAAACACAAGTCtcttagtctgctttatgctgctgtaacagaataccacagactgaataatttataaggaaaagaaatatatttgactcacagttctggaggctaggaagtccaagattgagagacctcatctggtgagggccttcttgctgtgtcataatatggtggagggTATTGTCATTCTGTTGCTGATAGACAattgatttactggctttccattt--------tttatgtgtagaagttctttatatatgctggatacaagtatttccttggatataaaattgcaaatattttctgttactctgtcatctgcctctcactcctgtgatgg i chlSab2.chr12 C 0 C 0 s calJac3.chr1 77118273 1261 + 210400635 aaaaattagctgggtgtggtggtgcct--ccataatcccaactactccagaggctgagg-------caggagaatcacttgaacccaggaggtggaggttgcagtgagctgaggttgtaccactgcactccagcctaagcaatagagtgagattccatctcaaaaaaaag--agaaaagaaatagaaaaagaaAATCATTAATATCATCAGAAATGAAAC-AAAACCCAAAAGCTTAGAAATAAGCAATAACAAAGGAGCTGATAGAGAACCAGTAATTTAAAATATATCAGAAAAGTCACACTagatttatatatttgacaacaataacactaagaacttctgttcatcaaaacacagcatcacaggagtgaga-gcagatgacaaagtaacagagagtattttcgattttatacccaatgaagta-ttgtatccagaatatacaatccagaacttctacaaacaaatttttaaaagatggaaagccaacaaaaaattgggcaaaagtttgaacaggtgctttacaaaggagaatattctgatgggtatgaaaggtactcagctttaggaaaatgtaagtaaagccacaataatatggcatcaaccagaaccgttaaaatgaagaacaaat-gaataataccaaggattagtgagagtgttaaagcaacctgacctctcatactctactggagagagtgtaaatcagtaaaacccctttttggaaaatcgtttggcaacatccactaattctaaaca---------------------tagttccactactaagtatatatcttacagagagatgcacatatatgtaaactaaaagacatgtgcaaggataatcacagcagcactatccataaaaattggaatcaattgtctatcagcagcagaatgaataaatgcattgtggtatattcacacaatagaatactatgcagaaaagaaaacaaacACAAGtgtcttagtctgctttacgctgctataacagaataccatagactgggtaatttacaatgaaaagaagtatatttggcttacagttctggaggctaggaggtccacgatcgagagactacatctggtgagggccttcttgctgtgtcataacatggtagagggcACTGTCATTCCGTTGCTGACAGACAAtttattgactggctttccatcttttaaaaatttatttgtagaatttctttatatattctggatacaggtactttctttcatataaaattgcaaagattttctgttacacggttgtctgcctctcactcctgtgatgg i calJac3.chr1 C 0 C 0 a score=-6071.000000 s hg38.chr9_GL383542v1_alt 40818 5 + 60032 --tgta--t s panTro4.chr9 86985149 6 + 137840987 --tgta-tt i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83616536 7 + 135191526 --tgtattt i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76126722 5 - 122973662 --tgta--t i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 97571367 3 + 112192347 --tgt---- i rheMac3.chr15 I 2 C 0 s macFas5.chr15 98793753 3 + 112612857 --tgt---- i macFas5.chr15 I 2 C 0 s papAnu2.chr15 94505878 3 + 107442819 --TGT---- i papAnu2.chr15 I 2 C 0 s calJac3.chr1 77119534 5 + 210400635 tgtgt---- i calJac3.chr1 C 0 C 0 e chlSab2.chr12 98717920 0 + 108555830 C a score=2730.000000 s hg38.chr9_GL383542v1_alt 40823 2 + 60032 tt s panTro4.chr9 86985155 2 + 137840987 tt i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83616543 2 + 135191526 tt i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76126727 2 - 122973662 tt i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 97571370 2 + 112192347 tt i rheMac3.chr15 C 0 C 0 s calJac3.chr1 77119539 2 + 210400635 tt i calJac3.chr1 C 0 C 0 e chlSab2.chr12 98717920 0 + 108555830 C e papAnu2.chr15 94505881 0 + 107442819 C e macFas5.chr15 98793756 0 + 112612857 C a score=1290313.000000 s hg38.chr9_GL383542v1_alt 40825 2401 + 60032 ttttttaacactt-------tagggtacatgtgcacaacgtgcaggtttgttatgtatagatacatgtgtcatgttggtgtgctgcacacattaactcatcatttacattaggtatatctcctaacgctatccctcccccctccccccgccccacgacaggccccggtgtgtgatgttacccttcctgtgtccaagtgttctcattgttcacttcccatctatgagtgagaacatgcggtgcttgattttttgtccttgcgatagtttgctgagaatgatggtttccagcttcatccatgtccctacaaaggacatgaactcatccttttttatggctgcatagtattccatggtgtatatgtgccacattttcttaatccagtctatcattgttggacatttgggttggttccaagtctttgctattgtgaatagtgctgaaataaacatacgtatgcatgtgtctttatagcagcatgatttataatcccttgggtatatacccagtaatgggatggctgggtcaaatggtatttctagttctagatccttgaggaatcgccacactgtcttccacaatggttgaactagtttacagtcccaccaacagtgtaaaagtgttcctatttctccacatcctctccagcacctgttgtttcctgacattttaatgatcgccattctaactgatgtgagctggtatctcattgtggttttgatttgcatttctctgatggccagtgatgatgagcattttttcatgtgtctgttggctgcataaatgtcttcttttgagaagtgtttgttcatatccttcgcccactttttgatggggttgtttgtttttttcttgtaaatttgtttgagctctttgtagattccggatattagcccttggtcagaagagtagattgcaaaaattttctcccattctgtaggttgcctgttcactctgatggtagtttcttttgctgtgcaaaagctctttagtttaattagatcccatttgtcaattttggcttttgttgccattgcttttggtgttttagacatgaagtccttacacatgcctatgccctgaatggtattgcctaggttttcttctagggtttttatggttttaggtctaacatttaagtctttaatccatcttgaattaatttttgtataaggtgtaaggaagggatcccgtttcagttttctacatatggctagccagttttcccagcactatttattaagtagggaatcctttccccatttcttgtttttgtcaggtttgtcaaagatcagatggttgtagatgtgtggcattatttctgagggctctgttctgttccattggtctatatctttgtttcagtaccagtaccatactgttttggttactgtagccttgtagtatagtttcaagtcaggtagcatgaagcctccagctttgttcttttggcttaggattgacttggcaatgtgagctc-ttttttggttccatatgaaatttaagggagttttttccaattctgtgaagaaagtcattggtagcttgatggggatggcattgaatctataaattaccttggtcagtatggccattttcacgatattgattcttcttatccatgagcatggaatgttcttccatttgcttgtgtcctcttttatctgatgaacattgatgcaaaaatcctcaataaaatactggcaaactgaatccagcagcacatctaaaagcttatccaccatgaccaagtaggcttcatccatgggatgcaaggctggttcaacatatgcaaatcaataaacgtaatccagcatataaacagaaccaaagacaaaaaccacatggttatctcaatacatgcagaaaaggcctttgacaaaattcaa------cagcccttcatgctaaaaactctcaataaattaggtattgatgggacgtatctcaaaataataagagctatttatgacaaacccacagccaatatcatactgaatgggcaaaaactggaagcactccctttgaaaactgggacaagacagggatgccctctttcaccactcccattcaacatagtgttggaagttctggccagggcaatcaggcaggaaaaagaaataaagcgtattcagttaggaaaagaggaagtcaaattgtctctgtttgcagatgacatgattgtatatttagaaaaccccattgtctcagcccaaaatctccttaagctgataagcaacttcagcaaagtctcaggatacaaaatcaatgtgcaaaaatcacaagcattcttatacaccaataacatacaaacagagagccaaatcatgagtgaactcccattcagaattgcttcaaagagaataaaatacctaggaatccaacctacaagggatgtgaaagagctcttcatga s panTro4.chr9 86985157 2414 + 137840987 ttttttaatactttaagttctagggtacatgtgcacaacgtgcaggtttgttacatatagatacatgtgccatgttggtgtgctgcacacattaactcgtcatttacattaggtatatctcctaatgctatccctcctccatccccccaccccacgacaggccctggtgtgtgatgttccccttcctgtgtccaagtgttctcattgttcacttcccatctatgagtgagaacatgaggtgcttgatttttcgtccttgcgatcatttgctgagaatgatggtttccagcttcatccatgtccctacaaaggacatgaactcatccttttttatggctgcatagtattccatggtgtatatgtgccacattttcttaatccagtctatcattgttggacatttgggttggttccaagtctttgctattgtgaatagtgctgaaataaacatacgtatgcatgtgtctttatagcagcatgatttataatcctttgggtatatacccagtaatgggatggctgggtcaaatggtatttctagttctagatccttgaggaatcgccacactgtcttccacaatggttgaactagtttacagtcccaccaacagtgtaaaagtgttcctatttctccacatcctctccagcacctgttgtttcctgacattttaatgatcgccattctaactgatgtgagatggtatctcattgtggttttgatttgcatttctccgatggccagtgatgatgagcattttttcatgtgtctgttggctgcataaatgtcttcttttgagaagtgtttgttcatatcctttgcccactttttgatgaggttgtttgtttttttcttgtaaatttgtttgagctctttgtagattccggatattagcccttggtcagaagagtagattgcaaaaattttctcccattctgtaggttgcctgttcactctgatggtagtttcttttgctgtgcaaaagctctttagtttaattagatcccatttgtctattttggcttttgttgccattgcttttggtgttttagacatgaagtccttacacatgcctatgccctgaatggtattgcctaggttttcttctagggtttttatggttttaggtctaacatttaagtctttaatccaacttgaattaatttttgtataaggtgtaaggaagggatcccgtttcagttttctacatatggctagccagttttcccagcactatttattaaatagggaatcctttccccatttcttgtttttgtcaggtttgtcaaagatcagatggttgtagatgtgtggcattatttctgagggctctgttctgttccattggtctatatctttgtttcagtaccagtacaatgctgttttggttactgtagccttgtagtatagtttcaagtcaggtagcatgaagcctccagctttgttcttttggcttaggattgacctggcaatgtgggctc-ttttttggttccatatgaaatttaagggagttttttccaattctgtgaagaaagtcatttgtagcttgatggggatggtattgaatctataaattaccttggtcagtatggccattttcacgatattgattcttcttatccatgagcatggaatgttcttccatttgcttgtgtcctcttttatctgatgaacatcgatgcaaaaatcctcaataaaatactggcaaactgagtccagcagcacatctaaaagcttatccaccatgaccaagtaggcttcatccatgggatgcaaggctggttcaacatatgcaaatcaataaacgtaatccagcatataaacagaaacaaagacaaaaaccacatggttatctcaatacatgcagaaaaggcctctgacaaaattcagagtttttagcccttcatgctaaaaactctcaataaattaggtattgatgggacgtatctcaaaataataagagctatttatgacaaacccacagccaatatcatactgaatgggcaaaaactggaagcaatccctttgaaaactggcacaagacagggatgccctctttcaccactcccattcaacatagtgttggaagttctggccagggcaatcaggcaggaaaaagaaataaagggtattcaattaggaaaagagaaagtcaaattgtctctgtttgcagatgacatgattgtatatttagaaaaccccattgtctcagcccaaaatctccttaagctgataggcaacttcagcaaagtatcaggatacaaaatcaatgtgcaaaaatcacaagcattcttatacaccaataacagacaaacagagagccaaatcatgagtgaactcccattcagaattgcttcaaagagaataaaatacctaggaatccaacctacaagggatgtgaaagagctcttcatga i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83616545 2405 + 135191526 ttttttaatactttaagttctagggtacatgtgcacaacgtgcaggtttgttacatatagatacatgtgccatattggtgtgctgcacccattaactcctcatttacatcaggtatatctcctaatgctatccctcccccatccccccaccccacgacaggccctggtgtgtgatgttccccttcctgtgtccaagtgttctcattgttcacttcccacctatgagtgagaacatgcggtgtttggttttttgtccttgtgatagtttgctgagaatgatggtttccagcttcatccatgtccctataaaggacatgaactcatccttttttatggctgcacagtattccatggtgtatatgtgccacattttcttaatccagcctatcactgatggacatttgggttggttccaagtctttgctattgtgaatagtgctgaaataaacatacgtatgcatgtgtctttatagcagcatgatttataatcctttgggtatatacccagtaatgggatggct-ggtcaaatggtatttctagttctagatccttgaggaatcgccacactgtcttccacaatggttgaactagtttacagtcccaccaacagtgtaaaagtgttcctatttctccacatcctctccagcacctgttgtttcctgactttttaatgatcaccattctaactggtgtgagatggtatctcattgtggttttgatttgcatttctccgatggccagtgatgatgagcattttttcatgtgtctgttggctgcataaatgtcttcttttgagaagtgtctgttcatatcctttgcccactttttgatgggtttgtttgtttttttcttgtaaatttgtttgagttctttgtagattctggatgttagcccttggtcagaggagtagattgcaaaaattttctcccattctgtaggttgcctgttcactctgatggtagtttcttttgc--tgcaaaagctctttagtttaattagatcccatttatcaattttggcttttgttgccattgcttttggtgttttagacatgaagtccttacccatgcctatgccctgaatggtattgcctaggttttcttctagggtttttatggttttaggtctaacatttaagtctttagtccatcttgaattaatttttgtacaaggtgtaaggaagggatcccatttcagttttctacatatggctagccagttttcccagcaccatttattaaattgggaatcctttccccattgcttgtttttgtcaggtttgtcaaagatcagatggttgtagatgtgtggcattatttctgagggctctgttctgttccattggtctatatctttgtttcagtatcagtaccatgttgttttggttactgtagccttgtagtatagtttcaagtcaggtagcatgaagcctccagctttgttcttttggcttaggattgacttggcaatgtgggctc-ttttttggttccatatgaactttaagggagttttttccaattctgtgaagaaagtcactggtagcttgatggagatggcattgaatctataaattaccttggtcagtatggccattttcacgatattaattctgcttatccatgagcatggaatgttcttccatttgcttgtgtcctcttttatctgatgaacatcgatgcaaaaattctcaataaaatactggcaaactgaatccagcagcacatctaaaatcttgtccaccatgaccaagtaggcttcatccatgggatgcaaggctggttcaacatatgcaaatcaataaatgtaatcaagcatataaacagaaccaaagacaaaaaccacatggttatctcaatacatgcagaaaaggcctctgacaaaattcaa------cagcccttcatgctaaaaactctcaataaattaggtattgatgggacgtatctcaaaataataagagctatttatgacaaacccacagccaatatcatactgaatgggcaaaaactggaagcattccctttgaaaactggcacaagacagggatgccctctctcaccactcctattcaacatagtgttggaagttctggccagggcaatcaggcaggagaaagaaataaagggtattcaattaggaaaagaggaagtcaaatcgtctctgtttgcagatgacatgattgtatatttagaaaaccccattgtctcagcccaaaatctccttaagctgataagcaacttcagcaaagtctcaggatacaaaatcaatgtgcaaaaatcacaagcattcttatacaccaataacagacaaatagagagccaaatcatgagtgaactcccattcagaattgcttcaaagagaataaaatacctaggaatccaacttacaagggatgtgaaagagctcttcatgg i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76126729 2409 - 122973662 ttttttaatactttaaattctagggtacatgtgcacaacatgcaggtttgttacatacggatacatgtgctatgttggtgtgctgcacccattaactcgtcatttacattaggtatatctcctaatgctatccctcccccatccccccaccccacgacagaccccagtgtgtgatgttccccttcctgtgtccaagtgttctcattgttcacttcccacctatgagtgagaacatgtggtgcttggttttttgtccttgtgatagtttgctgagaatgatggtttccagcttcatctatgtccctacaaaggacatgaactcatcctttttcatggctgcatagtattccatagtgtatatgtgccacattttcttaatccagtctatcactgatggacatttgggttggttccaagtctttgctattgtgaatagtgctgaaataaacatacatatgcatgtgtctttatagcagcatgatttataatcctttgggtatatacccagtaatgggatggctgggtcaaatggtatttctagttctagatccttgaggaatcgccacactgtcttccacaatggttgaactagtttacagtcccaccaacagtgtaaaagtgttcctatttctccacatcctctccagcacctattgtttcctgactttttaaccatcgccattctaactgatgtgagatggtatctcattgtggttttgatttgcatttctctggtggccagtgatgatgagcattttttcatgtgtctgtttgctgcataaatgtcttcttttgagaagtttctgttcatatcctttgcccactttttgatggggttgtttgtttttttcttgtaaatttgtttgagctctttgtagattctggataatagcccttggtcagaagagtagattgcaaaaattttctcccattctgtaggttgcctgttcactctgatggtagcttcttttgctgtgcaaaagctctttagtttaattagatcccatttgtcaattttggcttttgttgccattgctttttgtgttttagacatgaagtccttgcccatgcctatgtcctgaatggtattgcctaggttttcttctaaggtttttatggttttaggtctaacatttaagtctttaatccatcttgaattaatttttgtataaggtgtaaggaagggatcccgtttcagctttctacatatggctagccagttttcccagcgccatttattaaatagggaatcctttccccatttcttgtttttgtcaggtttgtcaaagatcagatggttgtagatgtgtggcattatttctgagggctctgttctgttccattggtctatacctttgtttcagtaccagtaccatgctgttttggttactgtagccttgtagtatagtttgaagtcaggtagcatgaagcctccagctttgttcttttggcttaggattgacttggcaatgtgggctctttttttggttccatatgaactttaagggagttttttccaattctgtgaagaaagtcattggtagcttgatggggatggcattgaatctataaattaccttgggcagtatggccattttcacgatattgattcttcttatccatgagactggaatgttcttccatttgcttgtgtcctcttttatctgatgaacattgatgcaaatattctcaataaaatactggcaaactgaatccagcaacacatctaaaagcttatccaccatgaccaagtgggcttcatccctgggatgcaagactggttcaacatatgcaaatcaataaacataatccagcatataaacagaaccaaagacaaaaaccacatggttatctcaatacatgcagaaaaggcctttgacaaaattcaa------cagcccttcatgctaaaaactcttaataaattaggtattgatgggatgtatctcaaaataataagagctatttatgacaaacccacagccaatatcatactgaatgggcaaaaactggaagcattccctttgaaaactggcacaagacagggatgccctctctcaccactcctattcaacgtagtgttggaagttctggccagggcaatcaggcaggagaaagaaataaagggtattcaattaggaaaagaggaagtcaaattgtccctgtttgcagatgacatgattgtatatttagaaaaccccatcgtctcagcccaaaatctccttaagctgataagcaacttcagcaaagtctcaggatacaaaatcaatgtgcaaaaatcacaagcattcttatacaccaaaaacagacaaacagagagccaaatcatgagtgaactctcattcagaattgcttcaaagagaataaaatacctaggaatccaacttacaagggatgtgaaggagctcttcatgg i nomLeu3.chr1a C 0 C 0 e calJac3.chr1 77119541 0 + 210400635 C e chlSab2.chr12 98717920 0 + 108555830 C e papAnu2.chr15 94505881 0 + 107442819 C e macFas5.chr15 98793756 0 + 112612857 C e rheMac3.chr15 97571372 0 + 112192347 C a score=4296.000000 s hg38.chr9_GL383542v1_alt 43226 5 + 60032 tgtgc s panTro4.chr9 86987571 5 + 137840987 tgtgc i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83618950 5 + 135191526 tgtgc i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76129138 5 - 122973662 tgtgc i nomLeu3.chr1a C 0 C 0 s chlSab2.chr12 98717920 5 + 108555830 tgtgt i chlSab2.chr12 C 0 C 0 e calJac3.chr1 77119541 0 + 210400635 C e papAnu2.chr15 94505881 0 + 107442819 C e macFas5.chr15 98793756 0 + 112612857 C e rheMac3.chr15 97571372 0 + 112192347 C a score=3822.000000 s hg38.chr9_GL383542v1_alt 43231 2 + 60032 tt s panTro4.chr9 86987576 2 + 137840987 tt i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83618955 2 + 135191526 tt i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76129143 2 - 122973662 tt i nomLeu3.chr1a C 0 C 0 s macFas5.chr15 98793756 2 + 112612857 tt i macFas5.chr15 C 0 C 0 s papAnu2.chr15 94505881 2 + 107442819 TT i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 98717925 2 + 108555830 tt i chlSab2.chr12 C 0 C 0 e calJac3.chr1 77119541 0 + 210400635 C e rheMac3.chr15 97571372 0 + 112192347 C a score=7896.000000 s hg38.chr9_GL383542v1_alt 43233 3 + 60032 tga s panTro4.chr9 86987578 3 + 137840987 tga i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83618957 3 + 135191526 tga i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76129145 3 - 122973662 tga i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 97571372 3 + 112192347 tga i rheMac3.chr15 C 0 C 0 s macFas5.chr15 98793758 3 + 112612857 tga i macFas5.chr15 C 0 C 0 s papAnu2.chr15 94505883 3 + 107442819 TGA i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 98717927 3 + 108555830 tga i chlSab2.chr12 C 0 C 0 e calJac3.chr1 77119541 0 + 210400635 C a score=2687161.000000 s hg38.chr9_GL383542v1_alt 43236 895 + 60032 tgaacaggagttcttgattttaatgtcgtcaaatatatGGATCTAGTGTGACTTTTCTG------ATATTATATTTTAAATTTGTGAT----TATCAGCGCCtttgttattgtttatttctaaggtttttgttttgtttctgAGGATATTAATTA-TTTTTTAAGGTTTTaaagaattagttgaccaacttcagaagggccaacttccaataaagagagtttctgagagtgaactgaaaaaatggtagcaggaggaatcaaaaaataattcaagaagatatatcataactgaagaatttgacttgccaaatgaaaaggatccaccaaatggggagcacattaaatgagatttgtcccccttcaaacacatcattagtgaccttcagaatcctgggaacggaaagatgactttccaagtttccttagaggaaaagcaggtcaaatgcaaagagtaggaatcagaatggctttgaaattctcaacagcaacagtagaagctaaaaaacaatggaggattatcttcaacattcggattgcctatagattcttcaatacccagacaaagtatgaattaaatgtgaagatggaataaagacatatttagacatgaagaagttgcaaaatttactttctattctattgtctctggaagctgagaggatgttgttgatcaaaatgaggaaataaaacaacaaagaacatgattagcattcagaaaacagtgggttccaaacaaaggagagatgaagggagtcctcaggacaggacaggagaaagagtccaggatgccagccacaagcaggcttggagaacagacagcccagaactctagaatattttttcaagaagacaataatagtgctaatgtgtttgaacacattgagagaagcttttcatgactgaagt s panTro4.chr9 86987581 895 + 137840987 tgaataggagttcttgattttaatgtcgtcaaatatatGGATCTAGTGTGACTTTTCTG------ATATTATATTTTAAATTTGTGAT----TATCAGCCCCTTTGTTATTGCTTATTTCTAAGGTTTTTGTTTTGTTTCTGAGGATATTAATTA-TTTTTTAAGGTTTTaaagaattagttgaccaacttcagaagggccaacttccaataaagagagtttctaagagtgaactgaaaaaatggtagcaggaggaatcaaaaaataattcaagaagatatatcataactgaagaatttgacttgccaaatgaaaaggatccaccaagtggggagcacattaaatgagatttgtcccccatcaaacacatcattagtgaccttcagaatcctgggaacggaaagatgactttccaagtttccttagaggaaaagcaggtcaaatgcaaagagtaggaatcagaatggctttgaaattctcaacagcaacattagaagctaaaaaacaatggaggattatcttcaacattcggattatctatagattcttcaatacccagacaaagtatgaattaaatgtgaagatggaataaagacatatttagacatgaagaagttgcaaaatttactttctattccattgtctctggaagctgagaggatgttgttgatcaaaatgaggaaataaaacaacaaagaacacgattagcattcagaaaacagtgggttccaaacaaaggagagatgaagggaatcctcaggacaggacaggagaaagagtccaggatgccagccacaagcaggcttggagaacagacagcccagaactctagaatattttttcaagaagacaataatagtgctaatgtgtttgaacacactgagagaagcttttcatgactgaagt i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83618960 895 + 135191526 tgaacaggcgttcttgattttaatgtcatcaaatatatGGATCTAGTGTGACTTTTCTG------ATATTATATTTTAAATTTGTGAT----TATCAGTCCCTTTGTTATTGCTCATTTCTGAGGTTTTTGTTTTGTTTCTGAGGATATTAATTA-TTTTTTAAGGTTTTaaagaattagttgaccaacttcagaagggccaacttccaataaagagaatttctgagagtgaactgaaaaaatggtagcaggaggaatcaaaaaataattcaagaagatatatcataactgaagaatttgacttgccaaatgaaaaggatccaccaagtggggagcacattaaatgagatttctcccccatcaaacacatcattagtgaccttcagaatcctgggaacggaaatatgactttacaagtttccttagaggaaaagcaggtcaaatgcaaagagtaggaatcagaatggctttgaaattctcaacagcaacagtagaagctaaaaaacaatggaggagtatcttcaacattcggattgtctatagattcttcagtacccagccaaagtatgaattaaatgtgaagatggaataaagacatatttagacatgaagaagttgcaaaatttactttctattccattgtctccagaagctgagaggacgttgttgatcaaaatgaggaaataaaacaagaaagaacacgattagcattcagaaaacagtgggttccaaacaaaagaaagatgaagggaatcctcaggacaggacaggagaaagagtccaggatgccagccacaagcaggcttggtgaacagacagcccagaattctagaatattttttcaagaagacaataatagtgctaatgtgtttgaacacattgagaaaagcttttcaccactgaagt i ponAbe2.chr9 C 0 I 20 s nomLeu3.chr1a 76129148 894 - 122973662 tgaacaggagttcttgattttaatgtcgtcaaatatatGGATCTAGTGTGACTTTTCTG------ATATTATATTTTAAATTTGTGAT----TATCAGCCCCTTTGTTATTGCTTATTTCTGAGGTTTTTGTTTTGTTTCTGAGGATATTAATTA-TTTTTTAAGGTTTT-aagaattagttgaccaacttcagaagggccaacttccaataaagagagtttctgagagtgaactgaaaaaatggtagcaggaggaatcaaaaaataattcaagaagatatatcataactgaagaatttgacttgccaaatgaaaaggatccaccaagtgaggagcatattaaatgagatttgtcccccatcaaacacatcattagtgaccttcagaatcctgggaatggaaagatgactttacaagtttccttagaggaaaagcaggtcaaatacaaagagtaggaatcagaatggctttgaaattttcaacagcaacagtagaagctaaaaaacaatggaggagtatcttcaacattcggattgtctacagattcttcaatacccagccaaagtatgaattaaatgtgaagatagaataaagacatatttagacatgaaggagttgcaaaatttactttctattccattgtctccagaagctgagaggatgttgttgatcaaaatgaggaaataaaacaagaaagaacacgattagcattcagaaaacagtgggttccaaacaaaagagagatgaagggaatcctcaggacaggatgggagaaagagtccaggatgccagccacaagcaggcttggagaacagacagcccagaactctagaatattttttcaagaagacaataatagtgctaatgtgtctgaacacattgagagaagcttttcacaactgaatt i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 97571375 894 + 112192347 tgaacaggagttcttgattttaatgtcaccaaatatatGGATCTCATGTGACTTTTCTG------ATATCATGTTTTAAATTTATGAT----TATCAGCCCCTTTGTTACTGCTTATTTCTGAGGTTTTTGTTTTGTTTCTGAGGatattaattatttttttaaaattttaaagaattagttgaccaacttcagaagggacaacttccaataaagagagtttctgagagtgaactgaaaaaatggtggcaggaggaatcgaaaaataattcaagaagatatatcataactgaagaatttgacttgccaaatgaaaagcatccaccaagtggggagcacattaaatgagaattgttccccatcgaacacatcattagtgaccttcagaatcctgggaatggagagatgactttacaagtttccttagaggaaaagcaggtcaaatacaaacagtaggaatcagaatggctttgaaattctcaacagcaacagtagaagctaaaaaataatggaggagtatcttcaacattcagattgtctacagattcttcaatacccagccaaagtatgaattaaatgtgaaaatggaat--agacatatttagacatgaaggagttgcaaaatttactttccattcctttgtctcaggaagctgagaggatgttgttcatcaaaatgaggaaataaaacaacaaagaacatgattagcattcagaaaacagtgggttccaaacaaaagagagatgaagggaatcctcaggacaggagaggagggagagtccaggatgccagccataagcaggcttggagaacagatagcccagaactctagaatatattttcaagaagacaataatagtgctaatgtcttcaaacacattgagagaagcttttcacaacagaagt i rheMac3.chr15 C 0 C 0 s macFas5.chr15 98793761 894 + 112612857 tgaacaggagttcttgattttaatgtcaccaaatatatGGATCTCATGTGACTTTTCTG------ATATCATGTTTTAAATTTATGAT----TATCAGCCCCTTTGTTACTGCTTATTTCTGAGGTTTTTGTTTTGTTTCTGAGGATATTAATTATTTTTTTTAAATTTTaaagaattagttgaccaacttcagaagggacaacttccaataaagagagtttctgagagtgaactgaaaaaatggtggcaggaggaatcgaaaaataattcaagaagatatatcataactgaagaatttgacttgccaaatgaaaagcatccaccaagtggggagcacattaaatgagaattgttccccatcgaacacatcattagtgaccttcagaatcctgggaatggagagatgactttacaagtttccttagaggaaaagcaggtcaaatacaaacagtaggaatcagaatggctttgaaattctcaacagcaacagtagaagctaaaaaataatggaggagtatcttcaacattcagattgtctacagattcttcaatacccagccaaagtatgaattaaatgtgaaaatggaat--agacatatttagacatgaaggagttgcaaaatttactttccattcctttgtctcaggaagctgagaggatgttgttcatcaaaatgaggaaataaaacaacaaagaacatgattagcattcagaaaacagtgggttccaaacaaaagagagatgaagggaatcctcaggacaggagaggagggagagtccaggatgccagccataagcaggcttggagaacagatagcccagaactctagaatatattttcaagaagacaataatagtgctaatgtcttcaaacacattgacagaagcttttcacaacagaagt i macFas5.chr15 C 0 C 0 s papAnu2.chr15 94505886 893 + 107442819 TGAACAGGAGTTCTTGATTTTAATGTCACCAAATATATGGATCTCATGTGACTTTTCTg------atatcatattttaaatttatgat----tatcAGCCCCTTTGTTACTGCTTATttctgaggtttttgttttgtttctgaggatattaatta-tttttaaaaattttaaagaattagttGACCAACTTCAGAAGGGACAACTTCCAATAAAGAGAGTTTCTGAGAGTGAACTGAAAAAATGGTGGCAGGAGgaatcaaaaaataattcaagaagatATATCATAACTGAAGAATTTGACTTGCCAAATGAAAAGCATCCACCACGTGGGGAGCACATTAAATGAGAATTGTTCCCCATCGAACACATCATTAGTGACCTTCAGAATCCTGGGAATGGAGAGATGACTTTACAAGTTTCCTTAGAGGAAAAGCAGGTCAAATACAAACAGTAGGAATCAGAATGGCTTTGAAATTCTCAACAGCAACAGTAGAAGCTAAAAAATAATGGAGGAGTATCTTCAACATTCAGATTGTCTACAGATTCTTCAATACCCAGCCAAAGTATGAATTAAATGTGAAGATGGAAT--AGACATATTTAGACATGAAGGAGTTGCAAACTTTACTTTCCATTCCTTTgtctcaggaagctgagaggaTGTTGTTCatcaaaatgaggaaataaaacaacaaagaacatGATTAGCATTCAGAAAACAGTGGGTTCCAAACAAAAGAGAGATGAAGGGAATCCTCAggacaggagaggagggagagtcCAGGATGCCAGCCATAAGCAGGCTTGGAGAACAGATAGCCCAGAACTCtagaatatattttcaagaaGACAATAATAGTGCTAATGTCTTCAAACACATTGAGAGAAGCTTTTCACAACAGAAGT i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 98717930 890 + 108555830 tgaacaggagttcttgattttaatgtcaccaaatatatGGATCTCATGTGACTTTTCTG------ATATCATATTTTAAATTTATGAT----TATCAGTCCCTTTGTTATTGCTTATTTCTGAGGTTTTTGTTTTGTTTCTGAGGATATTAATTA-TTTTTTAAAATTTTaaagaattagttgaccaacttcagaagggacaacttccaataaagagagtttctgagagtgaactgaaaaaatggtggcaggaggaatcgaaaaataattcaagaagatatatcataactgaagaatttgacttgccaaatgaaaagcatccaccaagtggggagctcattaaatgagaattgttccccatcgaacatatcattagtgaccttcagaatcctgggaatggagagatgactttacaagtttccttagaggaaaagcaggtcaaatacaaagagtaggaatcagaatggctttgaaattctcaacagcaac---agaagctaaaaaataatggaggagtatcttcaacattcagattgtctacagattcttcaatacccagccaaagtatgaattaaatgtgaagatggaat--agacatatttagacatgaaggagttgcaaaatttactttccattcctttgtctcaggaagctgagaggatgttgttcatcaaaatgaggaaataaaacaacaaagaacatgattagcattcagaaaacagtgggttccaaacaaaagagagatgaagggaatcctcaggacaggagaggagggagagtccaggatgccagccataagcaggcttggagaacagatagcccagaactctagaatatattttcaagaagacaataatagtgctaatgtcttcaaacacattgagagaagcttttcacaacagaagt i chlSab2.chr12 C 0 C 0 s calJac3.chr1 77119541 880 + 210400635 tgaacagcaggtcttgattttaatatcatcaaatatatGGATCTAGTGTGACTTTTCTGaaatttaaattatattttaaatttatGATTCTCTATCAGTCCCTTTGTTATTGCTTATTTCTGAGGTTTCTGTTTTGTTTCTGAGGATATTAACAA-TTTGTTAAAGTTTTaaagaatcaattgaccaacttcagaaggaccaacttccaatgaagtgagcttctgagagtgaactgaaaaaatggtggcagaaagaat--aaaaaaaattcaagaagatatatcataactgaagaatttgacttcccaaatgaaaaggatgcaccaagtggggctcatattacacgagaattgtgccccatcaaacacatcattagtgaccttcagaatcctgggaacagaaagatgactttacaagtttccttagaggaaaagcaggtaaaatacaaagcgtaggaatcagaatggcttggaaattctcaacagcaacagtaaaagctaaaaaacaatggaggaatatcttcaacattctaactgtctatgtattcttcaatacccagacaaaatatgaattaaatgtgaagacggaataaaggcatatttagatgtgaaggagttgcaaaatttactttctattccattgtctcagcaagctgagaggacgttgttgatc--------------aaacaagaaagaacatgattagcattcagaaagcagtgggttccaaacaaaagagagatgaaggaaatcctaaggacagtacaggagggagagt--------cgagccataagcaggcttggagaacagatatcccagaactctagaacgtattttaaagaagacgat-atggtgctaatgtgtttgagcacatcaaaagaagcttttcaaaactgaagt i calJac3.chr1 C 0 C 0 a score=18340.000000 s hg38.chr9_GL383542v1_alt 44131 7 + 60032 agaactt s panTro4.chr9 86988476 7 + 137840987 agaactt i panTro4.chr9 C 0 C 0 s nomLeu3.chr1a 76130042 7 - 122973662 agaactt i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 97572269 7 + 112192347 agaactt i rheMac3.chr15 C 0 C 0 s macFas5.chr15 98794655 7 + 112612857 agaactt i macFas5.chr15 C 0 C 0 s papAnu2.chr15 94506779 7 + 107442819 AGAACTT i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 98718820 7 + 108555830 agaactt i chlSab2.chr12 C 0 C 0 s calJac3.chr1 77120421 7 + 210400635 agaactt i calJac3.chr1 C 0 C 0 e ponAbe2.chr9 83619855 20 + 135191526 I a score=945640.000000 s hg38.chr9_GL383542v1_alt 44138 311 + 60032 gaaatgcgtaagtgataaatatatagaaaaataagcaaccaacaaaagattattattaactcaagaacaaacataaatttgtTAGAAACtgtagggtagtggccacacctacagaatacagatccagaatgcctggggttcaaattctggttttgccacttaacggctgaattaccttgggcaaatcacttcatctccatggtcctcatatataaaatcaggattattataacagtcttgtgaaagttttgtgaaaattaaaGTCCTTGGATCTTTTTCTGGCCCAGAGAAAGCCCCATGTAAATGTTAAC s panTro4.chr9 86988483 311 + 137840987 gaaatgtgtaagtgataaatatatagaaaaataagcaaccaacaaaagattattattaactcaagaacaaacataaatttgtTAGAAACtgtagggtagtggccacacctacagaatacagatccagaatgcctggggttcaaattctggttttgccacttaacggctgaattaccttggggaaatcacttcatctccatggtcctcatatataaaatcaggattattataacagtcttgtgaaagttttgtgaaaattaaaGTCCTTGGATCTTTTTTTGGCCCAGAGAAAGCCCCATGTAAATGTTAAC i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83619875 311 + 135191526 gaaattcataagtgataaatatatagaaaaataagcaaccaacaaaagattattattaactcaagaacaaacataaatttgATAGAAACTGTAGGTtagtggctacacctacagaatacagatccagaatgcctggggttcaaattctggttttgccacttaaaggctgaattaccttgggcaaatcacttcatctccatggtcctcatatataaaatcaggattattataacagtcttgtgagagttttgtgaaaattaaaGTCCTTGGATCTTTTTTTGGCCCAGAGAAAGCCCCATGTAAATGTTAAC i ponAbe2.chr9 I 20 C 0 s nomLeu3.chr1a 76130049 311 - 122973662 gaaattcataagtgataaatatatagaaaaataagcaaccaacagaagattattattaactcaagaacaaacataaatttgtTAGAAACtgtagggtagtggccacacctacagaatacagatccagaatgcctgggattcaaattctggttttgccacttaaaggctgaattaccttgggcaaatcacttcacctccgtggtcctcatatatcaaatcaggattattataacactcttgtgagagttttgtgaaaattaaaGTCCTTGGATCTTTTCTTGGCCCAGAGAAAGCCCCATGTAAATGTTAAC i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 97572276 311 + 112192347 gaaattcataagtgataaatatatagaaaaataagcaaccaacaaaagattattattaactcaagaacaaacataaatttgtTAGAGACTGTAAGGtagtggccatgcccacagaatacagatccagaatgcctgggattcaaattctggttttgccacttaaagcccgaattaccttgagcaaatcacttcacctccatggtcctcacatataaaatcaggattattgtaaccgttttgtgagaattttgtgaaaattgaagtccttggatcttttcttggcccagagaaagccccatgtaaatgttaat i rheMac3.chr15 C 0 I 2 s macFas5.chr15 98794662 311 + 112612857 gaaattcataagtgataaatatatagaaaaataagcaaccaacaaaagattattattaactcaagaacaaacataaatttgtTAGAGACTGTAAGGtagtggccatgcccacagaatacagatccagaatgcctgggattcaaattctggttttgccacttaaagcccgaattaccttgagcaaatcacttcacctccatggtcctcacatataaaatcaggattattgtaacagtcttgtgagaattttgtgaaaattgaaGTCCTTGGATCTTTTCTTGGCCCAGAGAAAGCCCCATGTAAATGTTAAT i macFas5.chr15 C 0 I 2 s papAnu2.chr15 94506786 311 + 107442819 GAAATTCATAAGtgataaatatatagaaaaataagcaacCAACAAAAGATTATTATTAACTCAAGAACAAACATAAATTTGTTAGAGACTGTAAGGTAGTGGCCACGCCCACAGAATACAGATCCAGAATGCCTGGGATTCAAATTCTGGTTTTGCCACTTAAAGCCCGAATTaccttgagcaaatcacttcACCTCCATGGTCCTCACATATAAAATCAGGATTATTGTAACAGTCTTGTGAGAATTTTGTGAAAATTGAAGTCCTTGGATCTTTTCTTGGCCCAGAGAAAGCCCCatgtaaatgttaat i papAnu2.chr15 C 0 I 2 s chlSab2.chr12 98718827 311 + 108555830 gaaattcataagtgataaatatatagaaaaataagcaaccaacaaaagattattattaactcaagaacaaacataaatttgtTAGAGACTGTAAGGtagtggccacgcccacagaatacagatccagaatgcctgggattcaaattctggttttgccacttaaagcccgaattaccttgagcaaatcacttcacctccatggtcctcacatataaaatcaggattattgtaacagtcttgtgagaattttgtgaaaattgaaGTCCTTGGATCTTTTCTTGGCCCAGAGAAAGCCCCATGTAAATGTTAAT i chlSab2.chr12 C 0 I 20 s calJac3.chr1 77120428 306 + 210400635 gaaattcataagtaataaatatatagaaaaat-agcaaccaacaaaagattattattaactcaagaacaaacataaaTGTGTTAGAGACtgtagtgtagtgggcacgcctatggaatacagatcctgaatgcttgggtttcaaattccggttttgccacttacaggctgaattgccttgggcaaatcacttgacttccatggtcctcatatataaaattagaattattataacagccttgtgagagttttgtgaaaattaaaGTCCTTGGATCTTT---GGGCCCACAG-AAGACCCATGTGAATGTTAAC i calJac3.chr1 C 0 C 0 a score=15851.000000 s hg38.chr9_GL383542v1_alt 44449 11 + 60032 GGTCt-ttattt s panTro4.chr9 86988794 12 + 137840987 TGTCTATTAttt i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83620186 11 + 135191526 GGTCt-ttattt i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76130360 11 - 122973662 GGTCt-ttattt i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 97572589 11 + 112192347 ttTtt-ttattt i rheMac3.chr15 I 2 I 16 s macFas5.chr15 98794975 11 + 112612857 TTTtt-ttattt i macFas5.chr15 I 2 I 16 s papAnu2.chr15 94507099 11 + 107442819 tttat-ttattt i papAnu2.chr15 I 2 I 16 s calJac3.chr1 77120734 11 + 210400635 TATCT-TTATTT i calJac3.chr1 C 0 C 0 e chlSab2.chr12 98719138 20 + 108555830 I a score=263412.000000 s hg38.chr9_GL383542v1_alt 44460 90 + 60032 tttattttatttatttttttagagactgggtct-ggctgtgttgcccaggatggag-tgcagtgg-tgcgagctcagctcactgcagccctga s panTro4.chr9 86988806 90 + 137840987 tttattttatttatttttttagagactgggtct-ggctgtgttgcccaggatggag-tgcagtgg-tgcgagctcagctcactgcagccctga i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83620197 90 + 135191526 tttattttatttatttttttagagactgggtct-ggctgtgttgcccaggatggag-tgcagtgg-tgcgagctcagctcactgcagccctga i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76130371 90 - 122973662 tttattttatttatttttttagagactgagtct-ggctgtgttgcccaggatggag-tgcagtgg-tgtgagctcagctcactgcagccctga i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 97572616 90 + 112192347 tttattttatttatttttttagagacagggtct-ggatgtattgccaggggtggag-tgtagtgg-tgcgatctcagcttactgcagccctga i rheMac3.chr15 I 16 C 0 s macFas5.chr15 98795002 90 + 112612857 tttattttatttatttttttagagacagggtct-ggctgtattgcccaggatggag-tgtagtgg-tgcgatctcagcttactgcagccctga i macFas5.chr15 I 16 C 0 s papAnu2.chr15 94507126 90 + 107442819 tttattttatttatttttttagagacagggtct-ggctgtattgcccaggatggag-tgtagtgg-tgcgatctcagcttactgcagccctga i papAnu2.chr15 I 16 C 0 s chlSab2.chr12 98719158 90 + 108555830 tttattttattaatttttttagagacagggtct-ggctgtattgcccaggatggag-tgtagtgg-tgcgatctcagctcactgcagccctga i chlSab2.chr12 I 20 C 0 s calJac3.chr1 77120745 93 + 210400635 TTAAttttatttatttatttagagacagggtctgggctgtgttgcccaggacagagttgcagtggtttcgatcttggcttactgcagccctga i calJac3.chr1 C 0 I 1285 a score=137356.000000 s hg38.chr9_GL383542v1_alt 44550 58 + 60032 cctcccgggctcaggcaattctcctgcttcagcctcctgagtagctaggactacaggt s panTro4.chr9 86988896 58 + 137840987 cctcccgggctgaggcaattctcctgcttcagcctcctgagtagctaggactacaggt i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83620287 58 + 135191526 cctcccgggctcaggcaattctcctgcttcagcctcctggatagctaggactacaggt i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76130461 58 - 122973662 cctcccgggctcaggcaattctcctgcttcagcctcctgagtagctaggactacaggt i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 97572706 58 + 112192347 cctcccaggctcaggcaatcctcctgcttcagcctcctgagtaggtagcactataggt i rheMac3.chr15 C 0 C 0 s macFas5.chr15 98795092 58 + 112612857 cctcccgggctcaggcaatcctcctgcttcagcctcctgagtaggtagcactataggt i macFas5.chr15 C 0 C 0 s papAnu2.chr15 94507216 58 + 107442819 cctcccgggctcaggcaatcctcctgcttcagcctcctgagtaggtagcactataggt i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 98719248 57 + 108555830 cct-ccgggctcaggcaatcctcctgcttcagcctcctgagtagctagcactataggt i chlSab2.chr12 C 0 C 0 e calJac3.chr1 77120838 1285 + 210400635 I a score=2156424.000000 s hg38.chr9_GL383542v1_alt 44608 758 + 60032 gtgcactgccacactcagctgatttttttt---ttttttt----------gtagtaacaaggtcttgctgtgttgcccaggtt----gTATTAACTATTGTGGTTGTCACGACCACTACCACCGTCACCATCatcattgtatatagtccatggttcagctggaaaggtgcaac--taataaaaatgctgactactaagcttaagaaaaaaatgtctatttaattagattgggagaaagtgaagacagaaattgcttgtcaggttaggaaagggaaggagggaaggagataaatcatcttccacattgggaagtcttagagaaatttttaatctgcaaaaccaaataagtaacaatataggcatttttgttgaagacatggaggaagatatcaaaaggttagctaagaaagtttacaagagttgctctgtgggagtgggaaatgggtgaatagacaagacacagggaacttattctttgtaacaatcttcgtCAATTAGATGTATAGATATTTTAATTCTAAAATTAAAACAACGTTTTTCTTTGaaaaagaaatcgccatgtcaagttgtttcactggataatt---ctgtttaaggaagaatcaatgctaacaataagcaattttttccagataatataagaagagaaaatatttcccttctcattgtatgggaccagtatcacactaataccaaaaccagacaaagaattacaaaaaa--agaaaattacagatcaatatccttcatgcatgtagacataaaaacctttaaacaagtatt s panTro4.chr9 86988954 762 + 137840987 gtgcactgccacactcagctgatttttttt---ttttttttttttttttggtagtaacaaggtcttgctatgttgcccaggtt----gTATTAACTATTGTGGTTGTCAAGACCACTACCACTGTCACCATCACCATTGTATATAGTCCATGGTTCAGCTGGAAAGGTGCAAC--taataaaaatgctgactactaagcttaagaaaaaaatgtctatttaattagattgggagaaagtgaagacagaaattgcttgtc-ggttaggaaagagaaggagggaagaaaataaatcatcttccacattgggaagtcttagagaaatttttaatctgcaaaaccaaataagtaacaatataggcatttttgttgaagacatggaggaagatatcaaaaggttagctaagaaagtttacaagagttgctctgtgggagTGGGAAATGGGTGAAT-----AGACACAGGGAACTTATTCTTTGCAACAATCTTCATCAATTAGATGCATAGATATTTTAATTCTAAAATTAAAACAACGTTTTTCTTTGaaaaagaaatcgccatgtcaagttgtttcactggataatt---ctgtttaaggaagaatcaatgctaacaataagcaattttttccagataatataagaagagaaaatatttcccttctcattgtatgggaccagtatcacactaataccaaaaccagacaaagaattacaaaaaa--agaaaattacagatcaatatccttcatgcatgtagacataaaaacctttaaacaagtatt i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83620345 760 + 135191526 gtgcactgccacactcagctgatttttttt---tttttttttttttttt-gtagtaacaaggtcttgctatgttgcccaggtt----gTATTAACTATTGTGGTTGTCACGACCACTACCACCATCACCATCatcattg--tatagtccatggttcagctggaaaggtgcaac--taataaaaatgctgactactaagcttaagaaaaaaatgtctatttaattagattgggagaaagtgaagacagaaattgcttgtccggttaggaaagggaaggagggaaggagataaatcatcttccacattgggaagtcttagagaaatttttaacctgcaaaaccaaataagtaacaatacaggcatttttgcttaagacatggaggaagatatcaaaaggttagctaagaaagtttaaaagagttgctctgtgggagtgggaaatgggtgaat-----agacacagggaacttattctttgtaacaaTCTTCATCAATTAGATGCACAGATATTTTAATTCTAAAATTAAAACAAAGTTTTTCTTTGaaaaagaaatcgccaagtcaagttgtttcaccggataatt---ctgtttaaggaagaatcaacgctaacaacaagcaattttttccagataatagaagaagagaaaatatttcccttctcattgtatgggaccagtattacactaataccaaaaccagacaaagaagtacaaaaaa--agaaaattgcagatcaatatccttcatgcatgtagacataaaaacccttaaacaagtatt i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76130519 746 - 122973662 gtgcactgccacactcagctgatttttctt---tttttttttttttt---gtaggaacaaggtcttgctatgttgcccaggtt----gTATTAACTATTGTTGTTGTCACGACCACTACCACCGTCACCATCATCAGTG--TATAGTCCATGGTTCAGCCGGAAAGGTGCAAC--taataaaaatgccgactactaagcttaagaaaaaaatgcctatttaattagattgggagaaagtgaagacagaaattgcttgtcgggttaggaaagggaaggagggaaggagataaatcatcttccacattgggaagtcttagagaaatttttaaactgcaaaaccaaataagtaacaatatagacatttttgtttaagacatggaggaagatatcaaaaggttagctaagcaagtttaaaagagttgctctgtgggagtgggaaatgggtgaat-----agacacagggaacttattctttgtaacaaTCTTCATCAATTAGATGCATAGATATTTTAATTCTAAAATTAAAACAAAGTTTTTCCTTGaaaaagaaat------gtcaagttgtttcactgcataatt---ctgtttaaggaagaatgaatgctaacaataagcaattttttccagataatataagaagagaaaatatttcccttctcattgtatgggaccagtattacactaataccaaaaccagacgaag---tacaaaaaa--agaaaattacag---aatagccttcatgcatgtagacataaaaacccttaaacaagtatt i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 97572764 761 + 112192347 gtgcactgccacactcagctgatttttttc---tttttttttttttg---gaaggaacaaggtcttgctatgttgcccaggttgTGAGTATTAACTATTGTGGTTGTCATGACCACTACCACCATCACCATCatcattg--tatagtccatggttcagctggaaaggtgcaactgtaatagaaatgctgactactaagcataagaaaaaaatgtctatttaattagattgggagaaagtgaagacagaaattgcttgtcaggttagggaagggaaggaggaaaggagataaatcatattccacactgggaagtcttagagaaatttttaaactgcaaaatcaaagaagtaacaatataggcatttttgtttaagacatagaggaagatatcaaaaggttagctaaaaaaattt--aagagttgctctgtgggagaaggaaatgggtgaat-----agacacagggaacttactctttgtaacaaTCTTCTTCAATTAGATGCATAGATATTTTAATTCTAAAATTAAAACTAAGTTTTTCTTTGaaaaagaaatcgccatgtcaagttgtttcactggataattctactgtttaaggaagaatcaatgctaacaataatcaattttttccagataatataagaagagaaaatatttcccttctcattctatgagaccagtattacactaataccaaaacca----aagaagtacaaaaaa--agaaaactacagattaatatccttcatgcatgcagacataaaaatccttcaatgagtatt i rheMac3.chr15 C 0 C 0 s macFas5.chr15 98795150 764 + 112612857 gtgcactgccaaactcagctgatttttttcttttttttttttttttg---gtaggaacaaggtcttgctatgttgcccaggttgTGAGTATTAACTATTGTGGTTGTCATGACCACTACCACCATCACCATCatcattg--tatagtccatggttcagctggaaaggtgcaactgtaatagaaatgctgactactaagcataagaaaaaaatgtctatttaattagattgggagaaagtgaagacagaaattgcttgtcaggttagggaagggaaggaggaaaggagataaatcatattccacactgggaagtcttagagaaatttttaaactgcaaaatcaaagaagtaacaatataggcatttttgtttaagacatagaggaagatatcaaaaggttagctaaaaaaattt--aagagttgctctgtgggagaaggaaatgggtgaat-----agacacagggaacttactctttgtaacaaTCTTCTTCAATTAGATGCATAGATATTTTAATTCTAAAATTAAAACTAAGTTTTTCTTTGaaaaagaaatcgccatgtcaagttgtttcactggataattctactgtttaaggaagaatcaatgctaacaataatcaattttttccagataatataagaagagaaaatatttcccttctcattctatgagaccagtattacactaataccaaaacca----aagaagtacaaaaaa--agaaaactacagattaatatccttcatgcatgcagacataaaaatccttcaatgagtatt i macFas5.chr15 C 0 C 0 s papAnu2.chr15 94507274 762 + 107442819 gtgcactgccacactcagctgatttttttt--ttttttttttttttg---gtaggaacaaggttttgctatgttgcccaggttgtgaGTATTAACTATTGTGGTTGTCAtgaccactaccaccatcaccatcatcatta--tatAGTCCATGGTTCAGCTGGAAAGGTGCAACTGTAATAGAAATGCTGACTACtaagcataagaaaaaaatgtctatttaattaGATTGGGAGAAAGTGAAGACAGAAATTGCTTGTCAGGttagggaagggaaggaggaaaggagataaATCATATTCCACACTGGGAAGTCTTAGAGAAATTTTTAAACTGCAAAATCAAAGAAGTAACAATATAGGCATTTTTATTTAAGACATAGAGGAAGATATCAAAAGGTTagctaaaaaaattt--aagagttgCTCTGTGGGAGAAGGAAATGGGTGAAT-----AGACACAGGGAACTTACTCTTTGTAACAATCTTCTTCAATTAGATGCAtagatattttaattctaaaattaaaactaagtttttctttgaaaaagaaatcgCCATGTCAAGTTGTTTCACTGGATAATTCTACTGTTTAAGGAAGAATCAATGCTAACAATAATCAATTTTTTCCAGAtaatataagaagagaaaatatttccctTCTCATTCTATAAGACCAGTATTAcactaataccaaaacca----aagaagtacaaaaaa--agaaaactacagattaaTATCTTTCATGCATGCAGACATAAAAATCCTTCAATGAGTATT i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 98719305 723 + 108555830 gtgcactgccacactcagctgatttttttt-------tttttttttt---gtaggaacaaggtcttgctatgttgcccaggctgTGAGTATTAACTATTGTGGTTGTCATGACCACTACCACCA------------------------------TCAGCTGGAAAGGTGCAACTGTAATAGAAATGCTGACTACTAAGCATAAGAAAAAAA-GTCTatttaattagattgggagaaagtgaagacagaaattgcttgtcaggttagggaagggaaggagaagaggagataaatcatattccacattgggaagtcttagagaaatttttaaactgcaaaatcaaagaagtaacaatataggcatttttgtttaagacatagaggaagatatcaaaaggttaggtaaaaaaattt--aagagttgctctgtgggagaaggaaatgggtgaat-----agacacagggaacttattctttgtaacaatcttcttcaattagatgcatagatattttaattctaaaattaaaaCTAAGTTTTTCTTTGaaaaaaaaatcaccatgtcaagttgtttcactggataattctactgtttaaggaagtatcaatgctaacaataatcaattttttccagataacata-----agaaaatatttcccttctcattctatgagaccagtattacactaataccaaaacca----aagaagtacaaaaaa--agaaaactacagattaatatccttcatgcatgcagacataaaaatccttcaacgagtatt i chlSab2.chr12 C 0 C 0 s calJac3.chr1 77122123 753 + 210400635 gtacactgccacatccagctgatttttctt--------ttttttttg---ataggaacaaggtcttgctatgttgcccaggctgtgggtgttaactattGTGGTTGTCACGACCACTACCACCATCACCATCattattg--tatagtccatggttcagctgaaaaggtgcaactataatggaaatgctgactactaagcttaagaaaaaaacgtctatttaattagattgggacaaagtgaagacagaaattgcttgtcaggctagggaagggaaggag--------ataaatcatcttccacattgggaagtcttagagaaatttttaaactgcaaaatcaaagaagtaacaacataggcacttttgtttaagacatggaggaagatatcaaaaagttagctaagatagtttaaaagagttgctctgtgggagaggaaaatggTTGAAT-----AGACTCAGGGAACTTATTCTTTGTAACAA---TGATCAAATAGATGCATAGatattttaattttaaaattaaaaCTAAGTTTTTCTTTGaaaaagaaattgccatgtcaaattgtttcattggataattctactgtttaaggaagaatcaacaccaacaataaggaattttttccagataatataagaagagaaaatatttcccttctcgttctatgggaccagtattacactatgaccaaaaccggacaaagaagtataaaaaaacagaaaactacagataagtattcttcatgcatgtggccataaaaactcttcaacaaGTATT i calJac3.chr1 I 1285 I 3458 a score=53517.000000 s hg38.chr9_GL383542v1_alt 45366 24 + 60032 aacaaataggcttcagtgattttt s panTro4.chr9 86989716 24 + 137840987 aacaaataggcttcagtgattttt i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83621105 24 + 135191526 aacaaataggcttcagtgattttt i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76131265 24 - 122973662 aacaaataggcttcagtgattttt i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 97573525 24 + 112192347 aacaaatagacatcagcgattttt i rheMac3.chr15 C 0 I 1515 s macFas5.chr15 98795914 24 + 112612857 aacaaataaacatcagcgattttt i macFas5.chr15 C 0 I 912 s papAnu2.chr15 94508036 24 + 107442819 AACAAATAGACATCAgcgattttt i papAnu2.chr15 C 0 I 912 s chlSab2.chr12 98720028 24 + 108555830 aacaaatagacatcagagattttt i chlSab2.chr12 C 0 I 1195 e calJac3.chr1 77122876 3458 + 210400635 I a score=247459.000000 s hg38.chr9_GL383542v1_alt 45390 466 + 60032 aagaagaattacacaccataactaaatgaagcttattccagaaatgcaaggttggttcaatattaaaaaatcagtcaatgtaatccaccacattaacagaataaaattcacatgatgttatcaattgatgcagtaaagtatttgacaaaattTGTTTATTTAAATAAATtttattgtgtacaaacatgatgttataagatacatatataagaaaatggttactatagtgaaacaaattaacatctccatcatctcatttagttatccataattcctcctgtggcaaaaacagctataatctacccattaaggaaaaatcctgaatatgataccctattattcactgtagtcttcatgctgttcattagacctttccacttgttcattctacatatttatttgctactttgtatcttttgacctaaacctctccatttcctccccaactccaaccttggtagccact s panTro4.chr9 86989740 466 + 137840987 aagaagaattacacaccataactaaatgaagcttattccagaaatgcaaggttggttcaatattaaaaaatcagtcaatgtaatccaccacattaacagaataaaattcacatgatgttatcaattgatgcagtaaagtatttgacaaaattTGTTTATTTAAATAAATCTTATTgtgtacaaacatgatgttataagatacatatataagaaaatggttactatagtgaaacaaattaacatctccatcatctcatttagttatccataattcctcctgtagcaaaaacagctataatctacccattaaggaaaaatcctgaatatgataccctattattcactgtagtcttcatgctgttcattagacctttccacttgttcattctacatatttatttgctactttgtatcttttgacctaaacctctccaattcctacccaactccaaccttggtagccact i panTro4.chr9 C 0 I 401 s ponAbe2.chr9 83621129 464 + 135191526 aagaagaattacacaccataactaaatgaagtttattccagaaatgcaaggttggttcaatattaaaaaatcagtcaatgtaatccaccacattaacagaataaaattcacatgatgttatcaattgatgcagtaaagtatttgacaaaattTGTTTATTTaaataaattttattatgtgcaaacatgatgttataagat--atatataataaaatggttattatagtgaaacaaattaacatctccatcatctcattgagttatccataattcctcctgtggcaaaaacagctataatctacccattaaggaaaaatcctgaatatgataccctattattcactgtagtcctcatgctgttcattagacctttccacttgttcattctatatatttatttgctactttgtatcttttgacctaaatctctccatttcctccccaactccaacctgggtagccact i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76131289 461 - 122973662 ---aagaattacacaccataaccaaatgaagcttattccagaaatgcaaggttggttcaatattaaaaaatcagtcaatgtaatccaccacattaacagaataaaattcacatgatgttatcaattgatgcagtaaaacatttgacaaaattTGTTTATTTAAATAAATtttattgtgtacaaacata--gttataagacacatatataataaaatggttactatagtgaagcaaattaacatctccgtcatctcatttagttatccataattcctcctgtggcaaaaacagctataatctacccattaaggaaaaatcctgaatatgataccctattattcactgtagtcctcatgctgttcattagacctttccacttgttcattctacatatttatttgctactttgtatcttttgacctaaatctctccatttcctccccaactccaaccttggtagccact i nomLeu3.chr1a C 0 C 0 e calJac3.chr1 77122876 3458 + 210400635 I e chlSab2.chr12 98720052 1195 + 108555830 I e papAnu2.chr15 94508060 912 + 107442819 I e macFas5.chr15 98795938 912 + 112612857 I e rheMac3.chr15 97573549 1515 + 112192347 I a score=12668.000000 s hg38.chr9_GL383542v1_alt 45856 52 + 60032 gttttattctctgtctctatatacttgatctctttttttctagagaccccac s ponAbe2.chr9 83621593 52 + 135191526 gttttattctctgtctctatatacttgatctctttttttctagagaccccac i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76131750 50 - 122973662 gttttattctc--tctgtatatatttgatctctttttttctagagaccccac i nomLeu3.chr1a C 0 C 0 e calJac3.chr1 77122876 3458 + 210400635 I e chlSab2.chr12 98720052 1195 + 108555830 I e papAnu2.chr15 94508060 912 + 107442819 I e macFas5.chr15 98795938 912 + 112612857 I e rheMac3.chr15 97573549 1515 + 112192347 I e panTro4.chr9 86990206 401 + 137840987 I a score=96315.000000 s hg38.chr9_GL383542v1_alt 45908 175 + 60032 ataagtgagatcatgcaatatttttctttctgtgtctagcttatttcacttagtataatatgttccaagtccacctatgttgtggcaaatggcagatcttcctttttgttgttgtttttgttttgtttttagacagggttttgttctgtcacccaggctagagtacagtggtgtg s panTro4.chr9 86990607 175 + 137840987 ataagtgagatcatgcaatatttttctttctgtgtctagcttatttcacttagtataatatgttccaagtccacctatgttgtggcaaatggcagatcttcctttttgttgttgtttttgttttgtttttagacagggttttgttctgtcacccaggctagagtacagtggtgtg i panTro4.chr9 I 401 C 0 s ponAbe2.chr9 83621645 175 + 135191526 ataagtgagatcatgcaatatttttctttctgggtctagcttatttcacttagtataatatgttccaagtccacctatgttgtggcaaatggcagatcttcctttttgttgctgtttttgttttgtttttagacagggttttgttctgtcacccaggctagactacagtggtgtg i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76131800 175 - 122973662 ataaatgagatcatgcaatatttttctttctgtgtctagcttatttcacttagtataatatgttccaagtccacctatgttgtggcaaatggcagATATTCCtttttgttgttgtttttgttttgtttttagacagggttttgttctgtcacccaggctagagtacagtggtgtg i nomLeu3.chr1a C 0 C 0 e calJac3.chr1 77122876 3458 + 210400635 I e chlSab2.chr12 98720052 1195 + 108555830 I e papAnu2.chr15 94508060 912 + 107442819 I e macFas5.chr15 98795938 912 + 112612857 I e rheMac3.chr15 97573549 1515 + 112192347 I a score=139957.000000 s hg38.chr9_GL383542v1_alt 46083 253 + 60032 atcttcgcttactgcagcctcgaactcctggggtcaagcaattctcc-tgcctcagtctccctagtagatgggactacaggcatacaccaccatgcccagctaatttttat-ttttttttatagatatggggctctca----------------------------------tata-ttttttatagatat-------------gttgcccaacctggtcttgaactcctggcttcaggctattctcacatcttggcttcccagactgctgggattacaggtgtgagccactacacccggccA s panTro4.chr9 86990782 236 + 137840987 atctttgcttactgcagcctcgaactcctggggtcaagcaatcctcc-tgcctcagtctccctagtagatgggactacaggcagacaccaccatacccagctaatttttat-ttttttt-atagatatggggctctga----------------------------------tata-ttttttatagatat-------------gtttcccaacctggtcttgaactcctggcttcaggctattctcacatcttggcttcccagactgctggga----------------ctacaCCAGGCCA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83621820 299 + 135191526 atctttgcttactgcagcctcgaactcctggggtcaagcaatcctccgggcctcagtctccctagtagatgggactacaggcatacatcatcatgcccagctaatttttatattttttttatagatatggggctctcactatgttnnnnnnnnnnccaggcccagctaattttatatttttttatagatatggggctttcactagttgcccaacctggtc-tgaactcctggcttcaggctattctcacatcttggctt-ccagactgctgggattaca-gtgtgagca-ctacacccgggcc i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76131975 238 - 122973662 atctttgcttactgcagcctcgaactcctggggtcaagcaatcctcc-tgcctcagtctccctagtagatgggactacaggcatacaccaccacgcccaactaatttttat-ttttttt-atagatatggggctctca-------------------------------------------------ctat-------------gttgcccgacctggtcttgaactcctggcttcaggctattctcacatcttggcttcccagacttttgggattacaggtgtgagtcactacaccctgccA i nomLeu3.chr1a C 0 C 0 s calJac3.chr1 77126334 235 + 210400635 atctcaggtcactgcaacctccgcctcctgggttcaaggaattctcc-tgcctcagcctcccaagtagctgggattacaggtgcacaccaccacacccagctaatatttgt-attttta-gtagagacgggg-tttca-------------------------------------------------ccat-------------gttggccaagctggtctcgaactcctgaccttgtgatctgtccacctct--gcctcccaaagttctaggattacaggcatgagccaccactcctggccC i calJac3.chr1 I 3458 C 0 e chlSab2.chr12 98720052 1195 + 108555830 I e papAnu2.chr15 94508060 912 + 107442819 I e macFas5.chr15 98795938 912 + 112612857 I e rheMac3.chr15 97573549 1515 + 112192347 I a score=348864.000000 s hg38.chr9_GL383542v1_alt 46336 272 + 60032 AGATCTCCtttttttt-t---------tttttttttgagacggagtgttgctctgttgcccaggctggagtgcagaggtgccatcttggctcactgcaagctctgcctctcgggttcaagtcattctcctgcctcagcctctcgagtagctgggactacaggtgcccaccaccatgcccggctaattttt-tgtacttttagtagagacaggg-tttcactgtgttagccaggatggtctcgatctcctgacctc--gtgatccacctgcctcggcctccccaaag s panTro4.chr9 86991018 272 + 137840987 AGATCTCCttttttttct---------tttttttttgagacggagtgttgctctgttgcccaggctggagtgcagtggtgccatcttggctcactgcaagctctgcctctcgggttcacatcattctcctgcctcagcctctcgagtagctgggactacaggtgcccatcaccatgcccagctaattttt-tgtacttttagtagagacaggg-tttcactgtgttagccaggatggtctcgatctcctgacctc--gtgatccacccaccttggcctccc-aaag i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83622119 270 + 135191526 aagtctccttttttt--t---------ttttttatagagatggagtcttgctctgttgcccaggctggagtgcagtggcgcaatctcggctcactgcaagctctgcctcccgggttcacaccattctcctgcctcagcctcttgagtagctgggactacaggtgcccaccaccatgcccggctaattttt-tgtacttttagtagagacaggg-tttcactgtgttagccaggatggtctcgatctcctaacctc--gtgatccacccgcctcggcctccc-aaag i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76132213 271 - 122973662 AGATCttttttttttt-t---------tttttttttgagatggagtcttgctctgttgcccaggctggagtgcagtggtgccatctcggctcactgcaagctctgcctctcaggttcacgccattctcctgcctcagtctctcaagtagctgggactacaggtgcccaccaccatgcccagctaattttt-tgtacttttagtagagacaggg-tttcactgtgttagccaggatggtctcgatctcctgacctc--gtgatccacccacctcggcctccc-aaag i nomLeu3.chr1a C 0 C 0 s macFas5.chr15 98796850 283 + 112612857 agatcttcctttttat-tgttttttg-ttttgtttttagacagggttttgttctgtcatccaggctagagtagagtggtgtgatctttgcttactgcagcctcgaactcctgggctcaagcgatcctcctgtctcagtctccctagtagatgggactacaagcatacaccaccatgcccagctaatttttatacattttttatagatacggggctctcactatgttgcccaacctggtcttgaacttctgacttcaggctattctcacatcttggcctctc-agac i macFas5.chr15 I 912 C 0 s papAnu2.chr15 94508972 284 + 107442819 AGatcttcctttttat-tgttttttgtttttgtttttagacagggttttgttctgtcatccaggctagagtagagtggtgtgatctttgcttactgcagcctcgaactcctgggctcaagcgatcctcctgtctcagtctccctagtagatgggactacaagcatacaccaccatgcccagctaatttttatatattttttatagatatggggctctcactatgttgcccaacctggtcttgaacttctgacttcaggctATTCTCACATCTTGGCCTCTC-Agac i papAnu2.chr15 I 912 C 0 s calJac3.chr1 77126569 282 + 210400635 AGAttttcttttttgt-tgtttttg--ttttgtttatagacagggttttgttctgtcatccagactagagtgcagtggtgtgatcttttcttactgcagtctcaaactcccgggctcaagtgatcctcttgcctcagtctccctagtagatggtactacaggcatgcatcaccatgcctagataatttttaaatttttaaaatagatatggggctctcactatgttccccaacctggtcttgaactcctggcttcaggctattctcacatcttggcctccc-ggac i calJac3.chr1 C 0 C 0 e chlSab2.chr12 98720052 1195 + 108555830 I e rheMac3.chr15 97573549 1515 + 112192347 I a score=142473.000000 s hg38.chr9_GL383542v1_alt 46608 55 + 60032 tgccgggattacaggcatgagccactgcacccagcccaagatct---ccctttttaaa s panTro4.chr9 86991290 55 + 137840987 tgctgggattacaggcatgagccactgcgcccagcccaagatct---ccctttttaaa i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83622389 55 + 135191526 tgctgggattacaggcatgagccaccacgcccagcccaagatct---ccttttttaaa i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76132484 55 - 122973662 tgctgggattacaggcatgagccaccacgcccagccCAAGATCT---CCTTTTTTAAA i nomLeu3.chr1a C 0 M 388 s rheMac3.chr15 97575064 57 + 112192347 tgctgggatgacaggcgtgagccaatgcacccgg-ccaagatctcctccttttttaaa i rheMac3.chr15 I 1515 C 0 s macFas5.chr15 98797133 57 + 112612857 tgctgggatgacaggtgtgagccaatgcacccgg-ccaagatctcctccttttttaaa i macFas5.chr15 C 0 C 0 s papAnu2.chr15 94509256 57 + 107442819 tgctgggatgacaggcgtgagccaatgcacccgg-cCAAGATCTCCTccttttttaaa i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 98721247 56 + 108555830 tgctgggatgacaggcgtgagccaatgcacccgg-ccaagatctcc-ccttttttaaa i chlSab2.chr12 I 1195 C 0 s calJac3.chr1 77126851 57 + 210400635 tgctgagattacaggtgtgagccattgcacccag-tcaagatctcctccttttttaaa i calJac3.chr1 C 0 C 0 a score=427147.000000 s hg38.chr9_GL383542v1_alt 46663 178 + 60032 ggctaaataatattccattgtctatttatgccatagtttatccattcatccattaatagacacctaggttgttttcatacgttggccattgcgaaaaatgctgcaacatggg-tgtgcagatatccttaccaggtagagatttcatttcctttggatatatgcctagaagagggattac s panTro4.chr9 86991345 178 + 137840987 ggctaaaaaatattccattgtctgtttatgccgtagtttatccattcatccattaatagacacctaggttgttttcatacattggccattgtgaaaaatgctgcaacatggg-tgtgcagatatccttaccaggtagagatttcatttcctttggatatatgcctagaagagggattac i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83622444 178 + 135191526 ggctaaataatattccattgtctatttatgccatagtttatccattcatccattaacagacacctaggttgttttcatacgttggccattgtgaaaaaagctgcaacatggg-tgtgcagatatccttaccaggtagagatttcatttcctttgggtatatgcctagaagagggattac i ponAbe2.chr9 C 0 C 0 s rheMac3.chr15 97575121 178 + 112192347 ggctaaataatattccattgtctatttatgctatagtttatccattcatcctttaatagacacccaggttgtttccataccttggccattgtgaaaagtgctgcaacatggg-tgtgcagttatccttaccaggtggtgatttcatttcctttgggtatatgcctagaagagggattac i rheMac3.chr15 C 0 C 0 s macFas5.chr15 98797190 178 + 112612857 ggctaaataatattccattgtctatttatgctatagtttatccattcatcctttaatagacacccaggttgtttccataccttggccattgtgaaaagtgctgcaacatggg-tgtgcagttatccttaccaggtggtgatttcatttcctttgggtatatgcctagaagagggattac i macFas5.chr15 C 0 C 0 s papAnu2.chr15 94509313 178 + 107442819 ggctaaataatattccattgtctattTATGCtatagtttatccattcatccattaatagACACCCAGGTTGTTTCCATACCTTGGccattgtgaaaagtgctgcaacaTGGG-TGTGCAGTTATCCTTACCaggtggtgatttcatttcctttgggtatatgcctagaAGAGGGATTAC i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 98721303 178 + 108555830 ggcttaataatattccattgtctatttatgctatagtttatccattcatccattaatagacacccaggttgtttccataccttggccattgtgaaaagtgctgcaacatggg-tgtgcagttatccttaccaggtggtgatttcatttcctttgggtatatgcctagaagagggattac i chlSab2.chr12 C 0 C 0 s calJac3.chr1 77126908 179 + 210400635 ggctaaataatatttcattgtctgtttatgccacaatttatccatttatccattaatagacacctaggttgtttccatatcttggctattgtgaaaagtgctgcaacatgggatatgcagatattcttaccaggtggtgatttcacttcctttgggtatatgcctagaagagggattac i calJac3.chr1 C 0 C 0 e nomLeu3.chr1a 76132539 388 - 122973662 M a score=6555810.000000 s hg38.chr9_GL383542v1_alt 46841 2299 + 60032 tagGCTgcatttgacaaaacttaatacctttcatga-tttaaaaaaaattctgagaaaactaggaataaaggtgaactccctcaacctgatt-------------aaaaaaaaaattcctgcaaaacataacagtgaaagaccgaatgctctcctcatgaaatcaggaacacagcaaaggtccccaccctcactactactattcaacttagtcctggaagctctaacccgtgcaaaaagcaacagaaggaaataaaagacacaGTTAcagcctattctcatttaaatttaggggtagttatgttccataaagtcattgcaaacatcaacttagcaaaagctaaaccacagggttaggttccttccaggctccagacataacattttcaccaaccaaaacaccatttactctatatagctgtgtttgctaacgtccttgtaaaacaagtaagtctcatcagcgttgaaaatttgctctcccaaataacgcttttcctatgtaacacttagaaggtgtttttaaagttcttccatagcctccctatctacagaacctgcctctcctgcgaggttaacatttttcacaccacattgccttttgaaacatgcaagccagcccagtactagccaagagaggtctggcattttcctgaccctgagtaatgtgactgcaaatttcctt-ggctttc-agtctcacaactctgtccactatgatttgggggcttggggattttctttagtcatcagctaatgaatccataaatttagttgcttttctatcttttctgttgtttcgtcatgctctatagatattactttagcattttctggagcagcctcaagtgcagattggtgaatttcctcttcctttttatggatgaaccatatttttgattcattaacactgaactcacaatcaacagcactatatataactcatgccggaactgagcttatctaacacatgaattttctccataaggcacattgcagccttctcacactcaggaacactagacatttcagcactttgctggggaccattttaaatcgtgacatcaccaacaaaaagcacacaaatgcaaaaaCCATCCACCAATGTGTCCCCCTCAACTGCAAAGATGACAGCATATCCCAGTGTGTTTAGTGAGGGATGCAGACACTCCCGCAGCTTAAAAAGACAGACAGTTTGTCTCTGACCCTACTGCAGTTGTTGCCCGTGCTAAAAATATACAGCAATTCAAGAGGAAACAATGTGACTTAGATTTGGTACTGTTTGTTTTTCA-TTTTTAATGTTTTTACAAATAAGTTAAAAAATATATTACACAAAGTGGCCTTTAGATGAACCATGGGTTCATGATACATTTGCCTTGAGGTG-----GAAGCCAAATTCATTATCAGAAAGCTGTGAGCGGG----------AGAAAGTGTATGCTATGTACATATCAATGCATTTCTGAATTAGTGAGTCGGTTCAGTCAACAGGTATCGCCTGAGCACTGGATACTGCCTGGTGCGGAGCTGCAAAGACCAGCAGCAGGCCACTCCTCCCTCCAGCCACGCGCAGTCCAGCAGCAGGCACACCCCGAAGGCAGAAACCTTCACAGGGGATAAGCTGCCAGTCTGGGAAGAGGCAGAGGATTTCTCGAGGAGAAT---AGAACTACTCATGATGCTGAAGGAGTGAGGCTGGATTCACTCGGAGATGGCGTTCAGCTGGCTTGCAGTGTGCCTGGGCCTCAAGTAGGGAAGAAACACTTACC--------------------------------------AGATAGAGAAGGGAATTAACCGGCTCAAAGAACCCAAAACTAAGGGCAGATTCAGTCAGACGCAGCGTGGCCCCGAGTCCAAATGGTGAACATCATTGTTCACTTCCTAGCTTATACATG----TGACTGTTTCCTCCGGAATGGATAGGGAGACCTGGGGGGGCTGGGCCGGAAAGATCGCCTCCTCTCATCCTGATGAACCCCTCACACTTCTGCTCCTCGCGCCTGGCACGGAGTGA----CTCCCCACCCGCCACGCTAGGGCCCATGCGCTGGGCCGGATCATGCCTGACGCTAGCAGGCTCGCTGGGTCCTTCACCATcttcctacagacacggg---ggctccctgggccagtaaggtgacctctcacagggcagccctgggccccaggagcccaaggtgggccctggcagttccctgaactggcacagtgttcattctctcatgctttatcggccgcagcactcacagaccagccctgattcagggaacaaggaaatagacccagctctccacgggagaagggttccggtgtctgcagacaccatgaatttgccCTAGGGAGGATT s panTro4.chr9 86991523 2295 + 137840987 tagGCTgcatttgacaaaacttaatacctttcatga-tttaaaaaaaattctgagaaaactaggaataaaggtgaactccctcaacctgatt--------t----aaaaaaaaaattcctgcaaaacataatagtgaaagactgaatgctctcctcatgaaatcaggaacacagcaaaggtccccaccctcactactactattcaacttagtcctggaagctctaacccgtgcaaaaagcaacagaaggaaataaaagacacaGTTAcagcctattctcatttaaatttaggggtagttatgttccataaagtcattgcaaacatcaacttagcaaaagctaaaccacagggttaggttccttccaggctccagacataacattttcacaaaccaaaacaccatttactctatatagctttgtttgctaacgtccttgtaaaacaagtaagtctcatcagcattgaaaatttgctctcccaaataacgcttttcctatgtaacacttagaaggtgtttttaaagttcttccacagcctccctatctacagagcctgcctctcctgcgaggttaacatttttcacaccacattgccttttgaaacatgcaagccagcccagtactagccaagagaagtctggcattttcctgaccctgagtaatgtgactgcaaatttcctt-ggctttc-agtctcacaactctgtccactatgatttgggggcttggggattttctttagtcatcagctaatgaatccataaatttagttgcttttctatcttttctgttgtttcgtcatgctctatagatattactttagcattttctggagcagcctcaagtgcagattggtgaatttcctcttcctttttatggatgaaccatatttttgattcattaacattgaactcacaaccaacagcactatatataactcatgccggaactgagcttatctaacacatgaattttctccataaggcacattgcagccttctcacactcaggaacactagacatttcagcactttgctggggaccattttaaatcgtgacatcaccaacaaaaagcacacaaatgcaaaaaCCATCCACCAATGTGTCCCCCTCAACTGCAAAGATGACAGCATATCCCAGTGTGTTTAGTGAGGGATGCAGACACTCCCGCAGCTTAAAAAGACAGACAGTTTGTCCCTGACCCTACTGCAGTTGTTGCCCGTGCTAAAAATATACAGCAATTCAGGAGGAAACAATGTGACTTAGATTTGGTA--GTTTGTTTTTCA-TTTTTAGTGTTTTTACAAATAAGTTAAAAAATATATTACACGAAGTGGCCTTTAGATGAACCATGGGTTCATGACACATTTGCCTTGAGGTG-----GAAGCCAAATTCATTATCAGAAAGCTGTGAGCGGG----------AGAAAGTGTATGCTATGTACATATCAATGCATTTCTGAATTAGTGAGTCGGTTCAGTCAACAGGTAATGCCTGAGCACTGGATACTGGCTGGTGCGGAGCTGCAAAGACCAGCAGCAGGCCACTCCTCCCTCCAGCCACGCGCAGTCCAGCAGCAGGCACACCCCGAAGGCAGAAACCTTCACAGGGGATAAGCTGCCAGTCTGGGAAGAGGCAGAGGATTTCTCGAG---AAT---AGAACTACTCATGATGCTGAAGGAGTGAGGCTGGATTCACTCGGAGATGGCGTTCAGCTGGCTTGCAGTGTACCTGGGCCTCAAGTAGGGAAGAAACACTTACC--------------------------------------AGATAGAGAAGGGAATTAACCGGCTCAAAGAACCCAAAACTAAGGGCAGATTCAGTCAGACGCAGCGTGGCCCCGAGTCCAAATGGTGAACATCATTGTTCACTTCCTAGCTCATACATG----TGACTGTTTCCTCCGGGATGGATAGGGAGACCTGGGGTGGCTGGGCCGGAAAGATCGCCTCCTCTCATCCTGATGAACCCCTCACACTTCTGCTCCTCGCGCCTGGCACGGAGTGA----CTCCCCACCCGCCACCCTAGGGCCCATGCGCTGGGCCGCATCATGCCTGATGCTAGCAGGCTCGCTGGGTCCTTCACCATCTTCCTACAGACACGGG---GGCTCCCTGGGCCAGTAAGGTGACCTCTCACAGGGCAGCCCTGGGCCCCAGGAGCCCAAGGTGGGCCCTGGCAGTTCCCTgaactggcacagtgttcattctctcatgctttatcggccgcagcactcacagaccagccctgattcagggaacagggaaacagacccagctctccacgggagaagggttccggtgtctgcagacaccatgaatttgccCTAGGGAGGATT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83622622 2300 + 135191526 tagGCTgcatttgacaaaacttaataccttttatga-tttaaaaaaaattctgagaaaactaggaataaaggtgaactccctcaacctgatt--------t----caaaaaaaaattcctgcaaaacataatagtgaaagaccgaatgctctcctcatgaaatcaggaacacagcaaaagtccccaccctcactactactattcaacttagtcctggaagctctaacccgtgcaaaaagcaacagaaagaaataaaagacacaGTTAcagcctattctcatttaaatttaggggtagttatgttccataaagtcactgcaaacatcaacttagcaaaagctaaactacagggttaggttccttccaggctccagacataacattttcaccaaccaaAACACCATTTAGGCTATATAGCTTTGTTTGCTAACGTCCTTATAAAACAAGTAAGTCTCATCAACGTTGAAAATTTGCTCTCCCAAATAATGCTTTTCCTATGTAACACTTAGAAGGTGTTTTTAAAGTTCTTCCACAGCCTCCCTATCTACAGAACCTGCCTCTCCTGTGAGTTTAACATTTTTCACACCACATTGCCTTTTGAAACATGTAAGCCAGCCCAGTACTAGCCAAGGGAGGGCTGGCATTTTCCTGACCCTGAGTAACGTGACTGCACATTTCCTT-GGCTTTC-AGCCTCACAACTCTGTCCACTATGATTTGGGGGCTTGGGGATTTTCTTTAGTCATCAGCTAATGAATCCATAAATTTAGTTGCTTTTCTATCTTTTCTGTTGTTTCGTCATGCTCTATAGATATTACTTTAGCATTTTCTGGAGCAGCTTCAAGTGCAGATTGGTGAATTTCCTCTTCCTTTTTATGGATGAACCatatttttgattcattaacattgaactcacaaccaacagcactatatataactcatgccggaactgagcttatctaacacatgaattttctccataaggcacactgcagccttctcacactcaggaacactagacatttcagcactttgctggagaccattttaaatagtgacatcaccaacaaaaagcacacaaatgaaaaaacCATCCACCAATGTGTCCCCCTCAACTGCAAAGATGACAGCATATCCCAGTGTGTTTAGTGAGGGATGCAGACACTCCCACAGCTTAAAAAGACAGACAGTTTGTCCCTGACCCTACTACAGTTGTTGCCTGTGCTAAAAATATACAGCAATTCAAGAGGAAACAATGTGACTTAGATTTGGTACTGTTTGTTTTTCa-tttttaatgtttttagaaataaatttaaaaatatattaCACAAAGTGGCCTTTAGATGAACCATGGGTTCATGATACATTTGCCTTGAGGTG-----GAAGCCAAATTCATTATCAGAAAGCTGTGAGCGGG----------AGAAAGTATATGCTATGTACATACCAATGCATTTCTGAATTAGTGAGTCGGTTCAGTCAACAGGTATCGCCTGAGCACTGGATACTGCCTGGTGTGGAGCTGCAAAGACCAGCAGCAGGCCATTCCTCCCTCCAGCCACGCGTAGTCCAGCAGCAGGCACACCCCGAAGGCAGAAACTTTCACAGGGGATAAGCTGCCAGTCTGGGAAGAGGCAGAGGATTTCTCGAGGAGAAT---AGAACTACTCATTATGCTGAAGGAGTGAGGCTGGATTCACTCGGAGATGGCGTTCAGCTGGCTTGCAGTGTACCTGGGCCTCAAGTAGGGAAGAAACACTTACC--------------------------------------AGATAGAGAAGGGAATTAACCGGCTCAAAGAACCCAAAACTAAGGGCAGATTCAATCAGACGCAGCGTGGCCCCGAGTCCAAATGGTGAATATCATTGTTCACTTCCTAGCTCATACATG----TGACTGTTTCCTCCGGGATGGATAGGGAGACCTGGGGTGGCTGGGCCGGAAAGATCGCCTCCTCTCATCCTGATGAACCCCTCACACTTCTGCTCCTCGCGCCTGGCACGGAGTGA----CTCCCCACCCGCCACGCTAGGGCCCGTGCGCTGGGCCGGATCATGCCTGATGCTAGCAGGCTCGCTGGGTCCTTTACCATCTTCCTACAGACATGGG---GGCTCTCTGGGCCAGTAGGGTGACCTCTCACAGGGCAGCCCTGGGCCCCAGGAGCCCCAGGTGGGCCCTGGCAGTTCCCTgaactggcacagtgttcattctctcatgctttatgggccgcagcactcacagagcagccctgattcagggaacaaggaaacagacccagctctccacgggagaagggttccggtgtctgcagacaccatgaatttgccCTAGGGAGGATT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76132927 2300 - 122973662 TAGGCTgcatttgacaaaactt-ata-ctttcatga-tttaaaaaaaattctgagaaaactaggaataaaggtgaactccctcaacctgattaaaaaaaaa----aaaaaaaaaattcctgcaaaacataatagtgaaagacctaatgcgctcctcatgaaatcaggaacacagcaaaggtccccaccctcactactactattcaccttagtcctggaagctctaacctgtgcaaaaagcaacagaaggaaataaaagacacaGTTAcagcctattctcatttaaatttaggggtagttatgttccat-aagtcactgcaaacatcaacttagcaaaagctaaaccacagggttaagttccttccgggctccagacataacattttcaccaaccaaaacatcatttacgctatatagctttgtttgctaacgtccttgtaaaacaggtaagtctcatcaacgttgaaaatttgctctcccaaataatgcttttcctctgtaacacttagaaggtgtttttaaagttcttccacagcctccctatctacagaacctgcctctcctgcaggtttaacatttttcacaccacattgccttttgaaacatgcaagccagcccagtactagccaagagaggtctggcattttcctgaccctgagtaatgtgactgcaaatttcctt-ggcttac-agcctcacaactctgtccactatgatttgcgggcttggggattttctttagtcatcagctaatgaatctataaatttagttgcttttctatcttttctgttgtttcgtcatgctctatagatattactttaacattttctggagcagcctcaagtgcagattggtgaatttcctcttcctttttatggatgaaccatatttttgattcattaacattgaactcacaaccaacagcactatatataactcatgccggaactgagcttatctaacacatgaattttctccataaggcacattgcagccttctcacactcaggaacactagacatttcagcactttgctggggaccattttaaaaagtgacatcaccaacaaaaagcacacaaatgcaaaaaCCATCCACCAATGTGTCCCCCTCAACTGCAAAGATGACAGCATATCCCAGTGTGTTTAGTGAGGGATGCAGACACTCCTGCAGCTTAAAA----AGACAGTTTGTCCCTGACCCTACTGCAGTTGTTGCCTGTGCTAAAAATATACAGCAATTCAAGAGGAAACAATGTGACTTAGATTTGGTA----CTGTTTTTCA-TTTTTAATGTTTTTAGAAATAAATTTTAAAA-AAATTACACAAAGTGGCCTTTAGATGAACCATGGGTTCATGATACATTTGCCTGGAGGTG-----GAAGCCAAATTCATTATCAGAAAGCTGTGAGCGGG----------AGAAAGTATATGCTACCTACATATCAATGCATTTCTGAATTAGTGAGTCGGTTCAGTCAACAGGTATCGCCTGAGCACTGGATACTGCCTGGTGCGCAGCTGCAAAGACCAGCAGCAGGCCACTCCTCCCTCCAGGCACGCGCAGTCCAGCAGCAGGGACAACCCGAAGGCAGAAACCTTCACAGGGGATAAGCTGCCAGTCTGGGAAGAGGCAGAGGATTTCTCGAGGAGAAC---AGAACTACTCATTATGCTGAAGGAGTGAGGCTGGATTCACTCGGAGATGGCGTTCAGCTGGCTTGCAGTGTACCTGGGCCTCAAGAAGGGAAGAAATGCCTACC--------------------------------------AGATAGAGAAGGGAATTAACCGGCTCAAAGAACCCAAAACTAAGGGCAGATTCAATCAGACGCAGCGTGGCCCCGAGTCCAAATGGTGAACATCATTGTTCACTTCCTAGCTCATACATGTGACTGACTGTTTCCTCCGGGATGGATAGGGAGACGTGGGGTGGCTGGGCTGGAAAGATCGCCTCCTCTCATCCTGATGAACCTCTCACACTTCTGCTCTTCGCGCCTGGCACGGAGTGA----CTCCCCACCCGCCACGCTAGGGCCCGTGCGCTGGGCCAGATCATGTCCGGTGCTAGCAGGCTCGCTGGGTCCTTCACCATcttcctacagacacggg---ggctcccttggccagtagggtgacctctcacagggcagcccgggaccccaggagcccaaggtgggccttggcagttccctgaactggcacagtgttcattctctcatgctttatcggccgcagcactcacaggccagccctgattcagggaacaaagaaacagacccagctctccacaggagaagggttccggtgtctgcagacaccatgaatttgccCTAGGGAGGATT i nomLeu3.chr1a M 388 C 0 s rheMac3.chr15 97575299 2215 + 112192347 tagGCTgcatttgacgaaacttaacatctttcatgattttttttaaaattctcagaaaactaggaataaaggtgaactccctcaacctgact--------t----aaaaaaaaaaatcctgcaaaacataatggtgaaagactgaatgctctcctcatgaaatcgggaacacagcaaaggtccccacactctgtactactattcaacttagtcctggaagctctaacccgtgcaaaaagcaaccgaaggaaataaaagacaCGGTTAcagcctattctcatt---atttaggggtagttatattccacaaagtcaccgcaaacaccaacttagcaaaagctgaaccacagggttaggttccttccgggctccagacataacattttcaccaaccaaaacaccatttacgctatataactttgtttgctaatgtccttgtaaaacaag----tctcattatcgttgaaaatttgctgtcccaaataacgcttttcctatgtaacacttagaaggtgtttttaaaattcttcactagcctccctatctacagaacctgcctttcctgcgagtttaacatttttcacaccacattgccttttgaaacatgcaagccaggccagtactagccaagcaaggtctggcattttcctgaccctgagtaatgtgactgcaaatttcctt-ggctgtc-agcctcacaactctgtccactatgatgtgggggcttggggattttctttagtcatcagctaatgaatctataaatttagttgcttttctatcttttctgtggtttcatcatgctctatagatattactttagcattttctggagcagcctcaagtgcagattggtgaatttcctcttcctttttatggatgaaccatatttttgattcattaacattgaactcacaaccaacagcactatatataactcatgccggaactgagcttatctaacacacgaattatctccataaggcacactgcagccttctcgcactcaggaacactagacatttcagcactttgctggggaccattttaaacagtgacatcaccaacaaaaagcacacaaatgcaaaaaCCATCCACCAATGTGTCCCCCTCAACTACAAAGATGACAGCATATCCCAGTGTGTTTAGTGAGTGCTGCAGACACTCCCGTAGCTTAAAA----AGACAATTTGTCCCTGACCCTACTGCAGTTGTTGCCTGTGCTAAAAATATACAGCAATTCAAGAGGAAACAATGTGACTTAGATTTGGTACTGTTTGttttttattttttaaagtttttagaaataaagaaaaaaa-ttattaCACAAAGTGGCCTTTAGATGAACCATGGGTTCATGATGCATTTACCTTGAGGTG-----GAAGCCAAATTCATTATCAGAAAGCTGTGAGCGGG----------AGAAAGTATATGCTGTGTGCATATCAATGCATTTCTGAATCAGTGAGTCGGTTCAGTCAACAGGTATCTCCTGAG-------------CCTACGCGGAGCTGCAAAGACCAGCAGCAGGCCACGCCTCCCTCCAGCCACGCCCAGTCCAGCAGCAGGGACACCCCGAAGGCAGAAACCTTCACAGGGGATAAGCTGCCAGTCTGGGAAGAGGCAGAGGATTTCTCGAG---AAT---AGAACTACTGATTATGTTGATGGAATGAGGCTGGATTCACTCGGAGATGGCGTTCAGCTGGCTTGCAGTGTACCTGAGCCTCAAGCAGGGAAGAAATGCCTGCC--------------------------------------AGGTGGAGAAGGGAATTAACCGGTTCAAAGAATTCAAAACT----------------AGATGCAGCGTGGCCCCGAGTCTAAGTGGTGAACATCATTGTTCACTTCCTAGTTCATACATG----TGATTGTTTCCTCCGGGAGGGATAGGGAGACCT-GGGTGGCTGGGCCGGAAAGATCGCCCCCTCTCGTCCTGATGAACCCCTCACACCTCTGCCCCTCGCACCTGGCACGGAGTGA---CCCCCCCACCCGCCCCGCGAGGGCCCGCGCGCTGGGCCGTATCATGTCCGGGGCTGGCAGGCTCGCTGGGTCCTTCACCATCTTCCTACAGACATGAG---GGTTCCCTGGGCCACTAGGGT---------------------------------------GTGGGCCCTCGCAGTTCGCTgaactggcacag-gttcat--tctcatgctttatcggccgcggcactcacaggccagcccggattca-ggaacagggaaacaaacccagctctccacgggagaagggttccggcgtctgcaggcaccatgaatttgccCTAGGGAGGATT i rheMac3.chr15 C 0 I 35 s macFas5.chr15 98797368 2213 + 112612857 taggctgcatttgacgaaacttaacatctttcatgattttttaaaaaattctcagaaaactaggaataaaggtgaactccctcaacctgact--------t---aaaaaaaaaaaatcctgcaaaacataatggtgaaagactgaatgctctcctcatgaaatcgggaacacagcaaaggtccccacactctgtactactattcaacttagtcctggaagctctaacccgtgcaaaaagcaaccgaaggaaataaaagacaCGGTTAcagcctattctcatt---atttaggggtagttatattccacaaagtcaccgcaaacaccaacttagcaaaagctgaaccacagggttaggttccttccgggctccagacataacattttcaccaaccaaaacaccatttacgctatataactttgtttgctaatgtccttgtaaaacaag----tctcattatcgttgaaaatttgctgtcccaaataacgcttttcctatgtaacacttagaaggtgtttttaaaattcttcactagcctccctatctacagaacctgcctttcctgcgagtttaacatttttcacaccacattgccttttgaaacatgcaagccaggccagtactagccaagcaaggtctggcattttcctgaccctgagtaatgtgactgcaaatttcctt-ggctttc-agcctcacaactctgtccactatgatgtgggggcttggggattttctttagtcatcagctaatgaatctataaatttagttgcttttctatcttttctgtggtttcatcatgctctatagatattactttagcattttctggagcagcctcaagtgcagattggtgaatttcctcttcctttttatggatgaaccatatttttgattcattaacattgaactcacaaccaacagcactatatataactcatgccggaactgagcttatctaacacacgaattatctccataaggcacactgcagccttctcgcactcaggaacactagacatttcagcactttgctggggaccattttaaacagtgacatcaccaacaaaaagcacacaaatgcaaaaaCCATCCACCAATGTGTCCCCCTCAACTACAAAGATGACAGCATATCCCAGTGTGTTTAGTGAGTGCAGCAGACACTCCCGTAGCTTAAAA----AGACAATTTGTCCCTGACCCTACTGCAGTTGTTGCCTGTGCTAAAAATATACAGCAATTCAAGAGGAAACAATGTGACTTAGATTTGGTAC----TGTTTTTTATTTTTTAAAGTTTTTAGAAATAAAGAAAAAAA-TTATTACACAAAGTGGCCTTTAGATGAACCATGGGTTCATGATGCATTTACCTTGAGGTG-----GAAGCCAAATTCATTATCAGAAAGCTGTGAGCGGG----------AGAAAGTATACGCTATGTGCATATCAATGCATTTCTGAATCAGTGAGTCGGTTCAGTCAACAGGTATCTCCTGAG-------------CCTACGCGGAGCTGCAAAGACCAGCAGCAGGCCACGCCTCCCTCCAGCCACGCCCAGTCCAGCAGCAGGGACACCCCGAAGGCAGAAACCTTCACAGGGGATAAGCTGCCAGTCTGGGAAGAGGCAGAGGATTTCTCGAG---AAT---AGAACTACTGATTATGTTGATGGAATGAGGCTGGATTCACTCGGAGATGGCGTTCAGCTGGCTTGCAGTGTACCTGAGCCTCAAGCAGGGAAGAAATGCCTGCC--------------------------------------AGGTGGAGAAGGGAATTAACCGGTTCAAAGAATTCAAAACT----------------AGACGCAGCGTGGCCCCGAGTCTAAATGGTGAACATCATTGTTCACTTCCTAGTTCATACATG----TGATTGTTTCCTCCGGGAGGGATAGGGAGACCT-GGGTGGCTGGGCCGGAAAGATCGCCCCCTCTCGTCCTGATGAACCCCTCACACCTCTGCCCCTCGCACCTGGCACGGAGTGA----CCCCCCACCCGCCCCGCGAGGGCCCGCGCGCTGGGCCGTATCATGTCCGGGGCTGGCAGGCTCGCTGGGTCCTTCACCATCTTCCTACAGACATGAG---GGTTCCCTGGGCCACTAGGGT---------------------------------------GTGGGCCCTCGCAGTTCGCTgaactggcacag-gttcattctctcatgctttatcggccgcggcactcacaggccagcccggattca-ggaacagggaaacaaacccagctctccacgggagaagggttccggcgtctgcaggcaccatgaatttgccCTAGGGAGGAtt i macFas5.chr15 C 0 I 14 s papAnu2.chr15 94509491 2234 + 107442819 TAGGCTGCATTTGACGAAACTTAACatctttcatgatttttttaaaaattctcagaaaactaggaataaaggTGAACTCCCTCaacctgact--------t-----aaaaaaaaaatcctgcaaaacataatggtgaaagactgaatgctctCCTCATGAAATCGGGAACACAGCAAAGGTCCCCACACTCTGTACTACTATTCAACTTAGTCCTGGAAGCTCTAACCCGTGCAAAAAGCAAccgaaggaaataaaagacacgGTTACAGCCTATTCTCATT---ATTTAGGGGTAGTTATATTCCACAAAGTCACCGCAAACACCAACTTAGCAAAAGCTGAACCACAGGGTTAGGTTCCTTCCGGGCTCCAGACATAACATTTTCACCAACCAAAACACCATTTACGCTATATAACTTTGTTTGCTAATGTCCTTGTAAAACAAG----TCTCATTATCATTGAAAATTTGCTGTCCCAAATAACGCTTTTCCTATGTAACACTTAGaaggtgtttttaaaattcttcactaGCCTCCCTATCTACAGAACCTGCCTTTCCTGCGAGTTTAACATTTTTCACACCACATTGCCTTTTGAAACATGCAAGCCAGGCCAGTACTAGCCAAGCAAGGTCTGGCATTTTCCTCACCCCGAGTAATGTGACTGCAAATTTCCTTGGGCTTTCAAGCCTCACAACTCTGTCCACTATGATTTGGGGGCTTGGGGATTTTCTTTAGTCATCAGctaatgaatctataaatttagTTGCTTTTCTATCTTTTCTGTGGTTTCATCATGCTCTATAGATATTACTTTAGCATTTTCTGGAGCAGCCTCAAGTGCAGATTGGtgaatttcctcttcctttttatggatgaaccatatttttgattcattaacattgaactcacaaCCAACAGCACTATATATAACTCATGCCGGAACTGAGCTTATCTAACACACGAATTATCTCCATAAGGCACACTGCAGCCTTCTCGCACTCAGGAACACTAGACATTTCAGCACTTTGCTGGGGACCATTTTAAACAGTGAcatcaccaacaaaaagcacacaAATGCAAAAACCATCCACCAATGTGTCCCCCTCAACTACAAAGATGACAGCATATCCCAGTGTGTTCAGTGAGTGCTGCAGACACTCCCGTAGCTTAAAA----AGACAGTTTGTCCCTGACCCTACTGCAGTTGTTGCCTGTGCTAAAAATATACAGCAATTCAAGAGGAAACAATGTGACTTAGATTTGgtactgtttgttttttattttttaaagtttttagaaataaagaaaaaaa-ttattacacaAAGTGGCCTTTAGATGAACCATAGGTTCATGATGCATTTACCTTGAGGTG-----GAAGCCAAATTCATTATCAGAAAGCTGTGAGCGGG----------AGAAAGTATATGCTATGTGCATATCAATGCATTTCTGAATCAGTGAGTCGGTTCAGTCAACAGGTATCTCTTGAGCACTGGATACTGCCTGACGCGGAGCCGCAAAGACCAGCAGCAGGCCACGCCTCCCTCCAGCCACGCCCAGTCCAGCAGCAGGGACACCCGGAAGGCAGAAACCTTCACAGGGGATAGGCTGACAGTCTGGGAAGAGGCAGAGGATTTCTCGAG---AAT---AGAACTACTGATTATGTTGATGGAATGAGGCTGGATTCACTCGGAGATGGCGTTCAGCTGGCTTGCAGTGTACCTGAGCCTCAAGTAGGGAAGAAATGCCTGCC--------------------------------------AGGTGGAGAAGGGAATTAACCGGCTCAAAGAATTCCAAACT----------------AGACGCAGCGTGGCCCCGAGTCCAAATGGTGAAcatcattgttcacttcccagtTCATACATG----TGATTGTTTCCTCCGGGAGGGATAGGGAGACCT-GGGTGGCTGGGCCGGAAAGATCGCCCCCTCTCGTCCTGATGAACCCCTCACACCTCTGCTCCTCGCACCTGGCACGGAGTGA-CAcccccccGCCCGCCACGCGAGGGCCCGCGCGCTGGGCCGCATCATGTCCGGGGCTGGCAGGCTCGCTGGGTCCTTCACCATCTTCCTACAGACATGAG---GGTTTCCTGGGCCACTAGGGT---------------------------------------GTGGGCCCTCGCAGTTCCCTAAACTGGCACCGTGTTCATTCTCTCATGCTTTATCGGTCGCGGCACTCACAGGCCAGCCCGGATTCA-GGAACAGGGAAACAAACCCAGCTCTCCACGGGAGAAGGGTTCCGGCGTCTGCAGGCACCATGAATTTGCCCTAGGGaggatt i papAnu2.chr15 C 0 I 2 s chlSab2.chr12 98721481 2232 + 108555830 tagGCTgcatttgatgaaacttaacatctttcatgatttttaaaaaaattctcagaaaactaggaataaaggtgaactctctcaacctgact--------ttaaaaaaaaaaaaaatcctgcaaaacataatggtgaaaaactgaatgctctcctcatgaaatcgggagcacagcaaaggtccccacactc--tactactattcaacttagtcctggaagctctaacccatgcaaaaagcaaccgaaggaaataaaagacaCGGTTAcagcctattctcatt---atttagaggtagttatattccacaaagtcaccgcaaacaccaacttagcaaaagctgaaccacagggttaggttccttcccggctccagacataacattttcaccaaccaaaacaccatttacgctatataactttgtttgctaatgtccttgtaaaacaagtaaatctcattatcgttgaaaatttgctgtcccaaataacgcttttcctatgtaacacttagaaggtgtttttaaaattcttcactagcctccctatctacacaacctagctttcctgcgagtttaacatttttcacaccacattgccttttcaaacatgcaagccaggccagtactagccaagcaaggtctggcattttcctgaccctgagtaatgtgactgcaaatttcctt-ggctttc-agcctcacaactctgtccactatgatttgggggcttggggattttctttagtcatcagctaatgaatctataaatttagttgcttttctatc--ttctgtggtttcatcatgctctatagatattactttagca-tttctggagcagcctcaagtgcagattggtgaatttcctcttcctttttatggatgaaccatatttttgattcattaacattgaactcacaaccaacagcactatatataactcatgccggaactgagcttatctaacacacgaattatctccataaggcacactgcagccttctcgcactcaggaacactagacatttcagcactttgctggggaccattttaaacagtgacatcaccaacaaaaagcacacaaatgcaaaaaccatCCACCAATGTGTTCCCCTCAACTACAAAGATGACAGCATATCCCAGTGTGTTTAGTGAGTGCTGCAGACACTCCCGTAGCTTCAAA----AGACAGTTTGTCCCTGACCCTACTGCAGTTGTTGCCTGTGCTAAAAATATACAGCAATTCAAGAGGAAACAATGTGACTTAGATTTGGTACTGTTTGTTTTTTATTTTTTAATGTTTTTAGAAATAAAGAAAAAAA-TGATTACACAAAGTGGCCTTTAGATGAACCATGGGTTCATGATGCATTTACCTTGAGGTG-----GAAGCCAAATTCATTATCAGAAAGCTGTGAGCGGG----------AGAAAGTATATGCTATGTGCGTATCAATGCATTTCTGAATTAGTGAGTCGGTTCAGTCAACAGGTATCTCCTGAG-------------CCTACGCGGAGCTGCAAAGACCAGCAGCAGGCCACGCCTCCCTCCAGCCACGCCCAGTCCAGCAGCAGGGACACCCCAAAGGCAGAAACCTTCACAGGGGATAAGCTGCCAGTCTGGGAAGAGGCAGAGGATTTCTCAAAGTTAAT---AGAACTACTGATTATGTTGATGGAATGAGGCTGGATTCACTCGGAGATGGCGTTCAGCTGGCTTGCAGTGTACCTGGGCCTCAAGTAGGGAAGAAATGCCTGCC--------------------------------------AAGTAGAGAAGGGAATTAACCTGCTCAAAGAATTCCAAACT----------------AGACGCAGCATGGCCCCGAGTCCAAATGGTGAACATCATTGTTCACTTCCCAGTTCAAACATG----TGATTGTTTCCTCCGGGATGGATAGGGAGACCTGGGGTGGCTGGGCCGGAAAGATCGCCCCCTCTCGTCCTGATGAACCCCTCACACCTCTGCTCCTCGCACCTGCCACGGAGTGACCCCCCCCCCAACCGCCACGCGAGGGCCGGCGCACTGGGCCGCATCATGTCCAGGGCTGGCAGGCTCGCTGGGTCCTTCACCATCTTCCTACAGACATGAGCACGGTTCCCTGGGCCACTAGGGT---------------------------------------GTGGGCCCTCGCAGTTCCCTGAACCGGcacagtgttcattctctcatgctttatctgccgcggcactcacaggccagcctggattcagggaacagagaaacaaacccagctctccacgggagaagggttccggcatctgcaggcaccatgaatttgccCTACGGAGGATT i chlSab2.chr12 C 0 I 3 s calJac3.chr1 77127087 2306 + 210400635 tagGCTgcatttgaccaaacttaatacctttcatgatttaaaaaaaaattctcagaaaactaggaacaaaggagaactccctcaatctgatt--------t-----tttaaaaaattcttgcaaaacataatggtgaaagactgaatgctctcctcatgaaatcagga-cacagcgaaggtgcccatagtcaccactactattcaacttggtcctggaagctctaactcatgcaaaaggcaacagaaggaaataaaagacaCTGTTAcagcctattctcatt---atttagggg----tatgttccataaagtcactgcaaacaccaacttagcaaaaactgaaccacaggtttaggtttcttcagggctccagacacaacattttcaccaaccaaAACACCGTTTACACTACATAGGTTTGTTTGCCAACGTCCTTATGAAACAAGTAAGTCTCATTAATGTTGAAAATTTGCTCTCCCAAATAATGCTTTCCCTATGAAACACTTAGATGGTGATTTTTAAATTGTTCCATAGCCTTCCTATCTACAGAACCTGCCTTTCCTGTG--------ATTTTTCACACCACATTGCCTTTTGAAACATGCAAGCCAGCCCAGTACTAGCCAAGAAAGGTCTGGCATTTTCCTGA-CCTGAGTAATGTGACCGCAAATTTCCTT-GGCTTTC-CGACTCACAATTCTGTCCAC--TGATTTGGGGGCTTGGGGATTTTCTTCAGTCATCCACTAATGAATCTATCAATTTAGTTGCTTTTCTATCTTTTCTGTGGTTTAAT-ATGCTCTATAGATACTACTTTGGCATTTTCTGGAGCAGCCTCAAGTGCAGATGGGTGAATTTCCTCTTCCTTTGTATGGATGAACCAAatttttgattcattaacattgaactcacaagcaacagcactatatataactcatggcggaactgagcttacctaacacatgaattttctccataaggcgcatcgcagccttctcgcactccggaacactagacacttcagcactctgttggggacca---------gtgacatcaccaacaaaaagcactcaaatgcaaaaagcatCCACCAATGTGTCCTCCTCAACTGCAAAGATGACAGCATATTCCAGTGTGTTTAGTGAGGGCTGCAGACACTCCCGCAGCTTCAAAAGACAAACACTTTGTCCCTGACCCTATTGCAGTTGTTGCCTGGGCTAAAAATATACAGCGATTCAAGAGGAAGCAATGTGACTTAGATGTGGTAC--TTTGTTTTTTATTTTTTACTGTTTTTAGAGACAAAGAAAAGTA-TTATTAGACAAAGTGGCCTTTAAGTGAACCATGGGTTCATGATGCATTTGCCTTGAGATGGAAGTGAAGCCAAATTCATCATCAGAAAGCTGTGAGCTGGAGAGGGTGTAAGAAAATATATGCTATGTACATACCAATGCATTTCTGAATTAGTGAGTCCGTTCAGTCAACAGGTATCTCCTGAGCATCACAGATAGCCTGGCGCGGAGCTGCAAAGACCAGCAGCAGGCCACTCCTCCTTCCAGCCACGTGCAGTCCAGCAGCAGGGACACCCTGAAGGCAGATGCCTTCACAGGGCATACGCTG-----CTGTGAAGAGACAGAGGATTTCTCAAGGACAATAGAAGAACTACTGATTATGCTGAGGGAGAGAGGCTGGATGCACTCGGAGATGGCGTTCAGCTGGCTTGCAGTGTACCTGGGCCTCAAGTAGGGAAGAAATGCCTACTAGGTagagacgggaaaagaaggtagagaagggagaagaaggtagagaagggaaTTAACCGGCTGGAAGAACTCAAAACTAAGGGCAAATTCAATCCGACGCAGTGTGACCCCGAGTCCAAATGGTGAATATCGTTGTTCACTTCCTTGTTCATACATG----TGACTGTTTCTAACAGGATGGATAGAAAGACCT-GGGTGACTGGGCCGGAGAGAGCGCCCCCTCTCGTCCTGATGGAAGCCTCACACCTCTGCTCCTCGCGTCCTGCGCTCAGTGA----CTTCCCACC------------GCCCGCGCACTCCCCCGCATCATGCCCAGCGCTGGTAGGCTCGCTGGGTCCTTCACCATCTTGCTACAGACGCGGG---GGCTCCCTCGCCCAGTAGTGTGACCTCTCACAGGGCAGCCTGGAGCCCCAGGAGCCCAAGGTGGGCCCTGGCAGTTCCTTgaactggcacagtgttcatttcctcatgccttattggcctcagcactcacaggccagcctggattcagggaacagggaaacagacccatctctccaccggagaagggttccagtgtctgcagacaccatgaatttg-ccTAGGGAGGATA i calJac3.chr1 C 0 C 0 a score=10836.000000 s hg38.chr9_GL383542v1_alt 49140 9 + 60032 TTTTTATTT s panTro4.chr9 86993818 9 + 137840987 TTTTTATTC i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83624922 9 + 135191526 ATTTTATTC i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76135227 9 - 122973662 TTTTAATTT i nomLeu3.chr1a C 0 C 0 s macFas5.chr15 98799595 9 + 112612857 tttttgttt i macFas5.chr15 I 14 C 0 s papAnu2.chr15 94511727 9 + 107442819 ttttttcct i papAnu2.chr15 I 2 C 0 s chlSab2.chr12 98723716 9 + 108555830 TTTTTTCCT i chlSab2.chr12 I 3 C 0 s calJac3.chr1 77129393 9 + 210400635 TTTTTGATT i calJac3.chr1 C 0 I 323 e rheMac3.chr15 97577514 35 + 112192347 I a score=3289.000000 s hg38.chr9_GL383542v1_alt 49149 10 + 60032 TCCCCTCCCt s panTro4.chr9 86993827 10 + 137840987 CCCCCCCCCC i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83624931 10 + 135191526 CCCCTTCCCC i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76135236 10 - 122973662 TTTCCGCttt i nomLeu3.chr1a C 0 C 0 s macFas5.chr15 98799604 10 + 112612857 ttcttttttt i macFas5.chr15 C 0 I 3 s papAnu2.chr15 94511736 10 + 107442819 gtctttttgt i papAnu2.chr15 C 0 I 6 s chlSab2.chr12 98723725 10 + 108555830 TTCTTTTTGt i chlSab2.chr12 C 0 I 15 e calJac3.chr1 77129402 323 + 210400635 I e rheMac3.chr15 97577514 35 + 112192347 I a score=332801.000000 s hg38.chr9_GL383542v1_alt 49159 153 + 60032 tttttttttt------ttttgacatagagtctcgctttgtcacccaggctggagtgcagtggtgcaatctcggctcactgcaacctccgcctcccgggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggcg-cccgccaccac s panTro4.chr9 86993837 149 + 137840987 tttttttttt----------gagatagagtctcgctttgtcacccaggctggagtgcagtggtgcgatctcggcttactgcaacctccgcctcccgggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggcg-cccgccaccac i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83624941 151 + 135191526 Cttttttttt--------ttgagatggagtctcgctttgtcacccaggctagagtgcagtggtgcgatctcggctcactgcaacctccgcctcccgggttcacgccattctcctgcttcagcctcccgagtagctgggactacaggcg-ccagccaccaa i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76135246 159 - 122973662 ttttttttttttttcttttttagatggagtctcgctctgtcacccaagctggagtgcagtggtgcgatctcagctcactgcaacctccgcctcccgggttcacaccattctcctgcctcagcctcccgagtagctgggactacaggcg-cccgccaccac i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 97577549 154 + 112192347 tttttttttt------ctttgagatggagtctcgctctgctgcccaggctggagtgcagtggcaccatctcggctcactgcaagttcggctttcagggttcacacctttctcctgcctcagcctctcgagtagctgggactacaggcgccccgccacccc i rheMac3.chr15 I 35 C 0 s macFas5.chr15 98799617 154 + 112612857 tttttttttt------ctttgagatggagtctcgctctgctgcccaggctggagtgcagtggcaccatctcggctcactgcaagttcggctttcagggttcacacctttctcctgcctcagcctctcgagtagctgggactacaggcgccccgccaccac i macFas5.chr15 I 3 C 0 s papAnu2.chr15 94511752 154 + 107442819 tttttttttt------ttttgagatggagtctcgctctgctgcccaggctggagtgcagtgtcaccatctcggctcactgcaagttcggCTTTcagggttcacgcctttctcctgcctcagcctctcgagtagctgggactacaggcgccccgccaccat i papAnu2.chr15 I 6 C 0 s chlSab2.chr12 98723750 154 + 108555830 tttttttttt------ttttgagatggagtctcactctgctgcccaggctggagtgcagtggcaccatctcggctcactgcaagttcggctttcagggttcacgcctttctcctgcctcagcctctcgagtagctgggactacaggcgccccgccaccag i chlSab2.chr12 I 15 C 0 e calJac3.chr1 77129402 323 + 210400635 I a score=31747.000000 s hg38.chr9_GL383542v1_alt 49312 23 + 60032 gcctggctaa----ttttttttttttt s panTro4.chr9 86993986 23 + 137840987 gcctggctaa----ttttttttttttt i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83625092 23 + 135191526 gcccggataa----ttttttttttttt i ponAbe2.chr9 C 0 C 0 s rheMac3.chr15 97577703 27 + 112192347 gcccggttacttttttttttttttttt i rheMac3.chr15 C 0 I 1 s macFas5.chr15 98799771 23 + 112612857 gcccggctac----ttttttttttttt i macFas5.chr15 C 0 I 1 s papAnu2.chr15 94511906 21 + 107442819 gcccggctac------ttttttttttt i papAnu2.chr15 C 0 I 1 s chlSab2.chr12 98723904 23 + 108555830 gccctgctaC----ttttttttttttt i chlSab2.chr12 C 0 I 307 e calJac3.chr1 77129402 323 + 210400635 I e nomLeu3.chr1a 76135405 0 - 122973662 C a score=271706.000000 s hg38.chr9_GL383542v1_alt 49335 164 + 60032 ttt-------------------gta-tttttttagtagagaccaggtttcaccatgttagccaggatggtctcgatcttctgacctcgtgatccaccagcctcggcctcccaaagtgctgggattacaggcgtgagccaccgcgcccggccGGGAGGATATTTTTAAGTAAACAAAGTTTACTT s panTro4.chr9 86994009 182 + 137840987 ttttttttttttttttttttttgga-attttttagtaaaaaccgggtt-caccatgttagccaggatggtctcaatcttctgacctcgtgatccaccagcctcggcctcccaaagtgctgggattacaggcgtgagccaccgcgcccagcAGGGAGGATATTTTTAAGTAAACAAAGTTTACTT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83625115 168 + 135191526 ttt----------------ttggtattttttttagtagagacgtggtttcaccatgttagccaggatggtctcgatcttctgacctcatgatccactggcctcggcctcccaaagtgctgggattacaggcgtgagccaccgcgcccggccAGGAGGATATTTTTAAGTAAACAAGGTTTACTT i ponAbe2.chr9 C 0 C 0 s rheMac3.chr15 97577731 164 + 112192347 -------------------tttcta-tttttttagtagagacagggtttcaccatgttagccaggatggtctcgatctgctgacctcatgatccaccggccttggcctcccaaaatgctgggattacaggcatgagctaccgcaccgggcAGGGAGGATATTTTTAGGTAAGCAAAGTTTACTT i rheMac3.chr15 I 1 C 0 s macFas5.chr15 98799795 164 + 112612857 -------------------tttcta-tttttttagtagagacagggtttcaccatgttagccaggatggtctcgatctgctgacctcatgatccaccggccttggcctcccaaaatgctgggattacaggcataagctaccgcaccgggcAGGGAGGATATTTTTAGGTAAGCAAAGTTTACTT i macFas5.chr15 I 1 C 0 s papAnu2.chr15 94511928 164 + 107442819 -------------------tttcta-tttttttagtagagacagggtttcaccatgttagccaggatggtctcgatctgctgacctcatgatccaccggccttggcctcccaaaatgctgggattacaggcatgagctaccgcaccggGCAGGGAGGATATTTTTAGGTAATCAAAGTTTACTT i papAnu2.chr15 I 1 C 0 s chlSab2.chr12 98724234 163 + 108555830 -------------------tttcta-tttttttagtagagacagggtttcaccatgttagccaggatggtctcgatctgctcacctcatgatccaccggccttggcctcccaaaatgctgggatta-aggcgtgagctaccgcgccgggcAGGGAGGATATTTTTAGGTAAGCAAAGTTTACTT i chlSab2.chr12 I 307 C 0 e calJac3.chr1 77129402 323 + 210400635 I e nomLeu3.chr1a 76135405 0 - 122973662 C a score=286483.000000 s hg38.chr9_GL383542v1_alt 49499 174 + 60032 AAAAC---CTTGGGCGGGCACT--CAGGGAAGGAAGACCCTAAATAGCTGAGAATGTTGTATATGGTACTTTGGCTGAGAATGTTCTCTATTGTACTTTGGCTGAGAATGTTCTATATAGCACTTCTCAAACATTTCTTCCTATCAGAATACTGCTACATATGAAGTAGAGTAAATGAA s panTro4.chr9 86994191 174 + 137840987 AAAAC---CTTGGGCGGGCACT--CAGGGAAGGAAGACCCTAAATAGCTGAGAATGTTGTATATGGTACTTTGGCTGAGAATGTTCTTTATTGTACTTTGGCTGAGAATGTTCTATATAGCACTTCTCAAACATTTCTTTCTATCAGAATACTGCTACATATGAAGTAGAGTAAATGAA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83625283 174 + 135191526 AAAAC---CTTGGGCGGGCACT--CACGGAAGGAAGACCCTGAATAGCTGAGAATGTTGTTTATGGTACTTTGGCTGAGAGTGCTCTTTATTGTACTTTGGCTGAGAATGTTCTATATAGCACTTATCAAACATTTCTTTCTATCAGAATACTGCTACATATGAAGTAGAGTAAATGAA i ponAbe2.chr9 C 0 C 0 s rheMac3.chr15 97577895 143 + 112192347 AAAAC---CTTGGGCGGGCACT--CAGGGAAGGAAGACCCTAAATAGCTGAGAATGTTGTATATG---------------------------GTACTTTGGCTGAGAATGTTGTATAAAGCACTTTTCAAACATTT----CTATCAGAATACTGCTACATATCAAGCAGAGTATATGAA i rheMac3.chr15 C 0 C 0 s macFas5.chr15 98799959 143 + 112612857 AAAAC---CTTGGGCGGGCACT--CAGGGAAGGAAGACCCTAAATAGCTGAGAATGTTGTATATG---------------------------GCACTTTGGCTGAGAATGTTGTATAAAGCACTTTTCAAACATTT----CTATCAGAATACTGCTACATATCAAGCAGAGTATATGAA i macFas5.chr15 C 0 C 0 s papAnu2.chr15 94512092 146 + 107442819 AAAACTTACTTGGGCGGGCACG--CAGGGAAGGAAGACCCTAAATAGCTGAGAATGTTGTATATG---------------------------GTACTTTGGCTGAGAATGTTGTATAAAGCACTTTTCAAACATTT----CTATCAGAATACTGCTACATATCAAGCAGAGTatatgaa i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 98724397 143 + 108555830 AAAAC---CTTGGGCGGGCACT--CAGGGAAGAAAGACCCTAAATAGCTAAGAATGTTGTATATG---------------------------GTACTGTGGCTGAGCATGTTGTATAAAGCACTTCTCAAACATTT----CTATCAGAATACTGCTACATATCAAGCAGAGTACATGAA i chlSab2.chr12 C 0 C 0 s calJac3.chr1 77129725 135 + 210400635 aaaaa---TCTGAGTCGGCACTCACAGGGAAGGAAGACCCTAA--------------TAAATACA---------------------------ATACTTTGACTGAGAATACTCTATATTGTACTTCTCAAACATTCCTTTCTATCAGAATAGTGCTACGTATCAACCAGAGTAAATGGA i calJac3.chr1 I 323 I 713 e nomLeu3.chr1a 76135405 0 - 122973662 C a score=152947.000000 s hg38.chr9_GL383542v1_alt 49673 83 + 60032 AAAAAC--------AAAAAACCCAGAATACTCCTACTGACAGCAAGCCCACTGTGGACAGAGGCTGGGAATACAACCAGAAGCCCCACGTG s panTro4.chr9 86994365 83 + 137840987 AAAAAC--------AAAAAACCCAGAATACTCCTACTGACAGCAAGCCCACTGTGGACAGAGGCTGGGAATACAACCAGAAGCCCCAAGTG i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83625457 83 + 135191526 AAAAAC--------AAAAAACCCAGAATACTCCTACTGACAGCAAGCCCACTGTGGACAGAGGCTGGGAATACAACCAGAAGCCCCAGGTG i ponAbe2.chr9 C 0 C 0 s rheMac3.chr15 97578038 91 + 112192347 AAAAACCAAAAAATGAAAAACCCAGAATACTCCTACTGACTGCAAGCCCACTGTGGACAGAGGCTGGGAATACAACCGGAAGCCCCAGGTG i rheMac3.chr15 C 0 C 0 s macFas5.chr15 98800102 91 + 112612857 AAAAACCAAAAAATGAAAAACCCAGAATACTCCTACTGACTGCAAGCCCACTGTGGACAGAGGCTGGGAATACAACCGGAAGCCCCAGGTG i macFas5.chr15 C 0 C 0 s papAnu2.chr15 94512238 91 + 107442819 aaaaaccaaaaaatgaaaaacctagAATACTCCTACTGACTGCAAGCCCACTGTGGACAGAGGCTGGGAATACAACCAGAAGCCCCAGGTG i papAnu2.chr15 C 0 I 303 s chlSab2.chr12 98724540 91 + 108555830 AAAAACCAAAAAATGAAAAACCCAGAATCCTCCTACTGACTGCAAGCCCACTGTGGACAGAGGCTGGGAATGCAACCGGAAGCCCCAGGTG i chlSab2.chr12 C 0 C 0 e calJac3.chr1 77129860 713 + 210400635 I e nomLeu3.chr1a 76135405 0 - 122973662 C a score=11655.000000 s hg38.chr9_GL383542v1_alt 49756 6 + 60032 AAAAGT s panTro4.chr9 86994448 6 + 137840987 AAAAGT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83625540 6 + 135191526 AAAAGT i ponAbe2.chr9 C 0 C 0 s rheMac3.chr15 97578129 6 + 112192347 AAAAGT i rheMac3.chr15 C 0 I 303 s macFas5.chr15 98800193 6 + 112612857 AAAAGT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 94512632 6 + 107442819 aaaagt i papAnu2.chr15 I 303 C 0 s chlSab2.chr12 98724631 6 + 108555830 AAAAGT i chlSab2.chr12 C 0 I 304 e calJac3.chr1 77129860 713 + 210400635 I e nomLeu3.chr1a 76135405 0 - 122973662 C a score=2100.000000 s hg38.chr9_GL383542v1_alt 49762 1 + 60032 G s panTro4.chr9 86994454 1 + 137840987 G i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83625546 1 + 135191526 G i ponAbe2.chr9 C 0 C 0 s rheMac3.chr15 97578438 1 + 112192347 G i rheMac3.chr15 I 303 C 0 s macFas5.chr15 98800199 1 + 112612857 G i macFas5.chr15 C 0 I 306 s papAnu2.chr15 94512638 1 + 107442819 g i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 98724941 1 + 108555830 G i chlSab2.chr12 I 304 C 0 e calJac3.chr1 77129860 713 + 210400635 I e nomLeu3.chr1a 76135405 0 - 122973662 C a score=1781668.000000 s hg38.chr9_GL383542v1_alt 49763 1020 + 60032 CCATACCATTTGTTTTCGGCAACAGTATACAGTAGACGTTTCTTTTACTAGAACAGAAGTGTTTCCATAGCCTGCTCCTGAGTGGATTCAGAGTCTCAGGGCCCATGCCCACCCAGCGTGCCCTGTGGCTTCACGGCTTCTGTCTTGGGCTGGCAGTGTCCCAATGGGGAGCACAGCAGTGGAAGCCATTTAGGGTCCTGGGAGATGCTGGTTGTAGGGTTTTAGAAATGTTACTCAAAGACATGCAAGGCGGACAGATGGAGCCTGGAGGTGACTCACAGACACATTTTGGGGAATTAGTAACAAATCACATGTTTATGTTTTCTTTAAAA--AATTTTTTCTGGTTAT---ACAAATATATGCTCATTAAACATTTCACA------------CAATTTG-----------------TTATTTATTTATTTATTTTtgaggttaagagtggaagtctaatgggcaaaacaatgagaaaagctctctctgttgcagagagaggggacctggagaaaacgggtagccCCACACAAtttttttttttt--gagacggattctc----tgttgc-------------------cacgatctccgctcactgcaacctccacctcccggcttcaagcaattctcctgcttcagccttccaagtagctgagactacaggcacatgccaccacacccggctaattttttgtatttttagtagagatggggtttcatcgtgttagccaggatggtctctagctcctgaccttgtgatccacccgcctcagcctcccaaagtgctggaattacaggtgtgagccaccgcacctggccACCGCACACAATTTTTTAAAGCGTAAGAAAAACATCTGAAATCCTCT----GTTAACCATGTTAACCTGTTGGTTTCCATCCTGTACCAATTTCTATGCATTTACACACACATACTTAATTTTACAAAAACGGGATCATAGCATAGTTGCCGTTTCTACTATACACACTTTCCTTTTTTGGCCACTTTTTGGGTACCTCCTTTAAACTCATTTAACCCCACTCCCCACCAAGTTAAGCCCATTCTTTCTATGTG s panTro4.chr9 86994455 1030 + 137840987 TCATACCATTTGTTTTCGGCAACAGTATACAGTAGACGTTTCTTTTACTAGAACAGAAGTGTTTCCATAGCCTGCTCCTGAGTGGATTCAGAGTCTCAGGGCTCATGCCCACCCAGCGTGCCCTGTGGCTTCACAGCTTCTGTCTTGGGCTGGCAGTGTCCCAATGGGGAGTATAGCAGTGGAAGCCATTTAGGGTCCTGGGAGGTGCTGGTTGTGGGGTTTTAGAAATGCTACTCAAAGACATGCAAGGCGGACAGACGGAGCCTGGAGGTGACTCACAGACACATTTTGGGGAATTAGTAACAAATCACATGTTTATGTTTTCTTTAAAA--AATTTTTTCTGGTTAT---ACAAATATATGCTCATTAAACATTTCACA------------Caattta-----------------ttatttatttatttatttttgaggttaagagtggaagtctaatgggcaaaacaatgagaaaagctctctctgctgcagagagaggggacctggagaaaacgagtagccCCACACAGttttttttttttttgagacggattctcactctgtcgc-------------------cacgatctcggctcactgcaacctccacctcccgggttcaagcaattctcctgcttcagccttccaagtagctgagactacaggcacatgccaccacacccggctaattttttgtatttttagtagagatggggtttcatcgtgttagccaggacggtctctagctcctgaccttgtgatccacccacctcagcctcccaaagtgctggaattacaggtgtgagccaccgcacctggccACCCCACACAATTTTTTAAAGCGTAAGAAAAACATCTGAAATCCTCTAACTGTTAACCATGTTAACCTGTTGGTTTCCATCCTGTACCAATTTCTATGCATTTACACACACATACTTAATTTTACAAAAATGGGATCATAGCATAGTTGCCGTTTCTACTATACACACTTTCCTTTTTTGGCCACTTTTTGGGTACCTCCTTTAAACTCATTTAACCCGACTCCCCACCAAGTTAAGCCCATTCTTTCTATGTG i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83625547 1045 + 135191526 CTATACCATTTGTTTTTGGCAACAGTATACAGTAGATATTTCTCTTACTAGAACAGAAGTGTTTTCATAGCCTGCTCCTGAGTGGATTCAGAGTCTCAGGGCCCATGCCCACCCAGCGTGCCCTGTGGCTTCACGGCTTCTGTCTTGGGCTGGCAGTGTCCCAATGGGGAGTACAGCAGTGGAAGCCACTTAGGGTCCTGGGGGGTGCTGGTTGTGGGGTTTTAGAAAAGCTACTCAAAGACGTGCAAGGCGGGCAGACAGAGCCTGGAGGTGACTCACAGATACATTTTGGGGAATTAGTAACAAATCACATGTTTATGTTTTCTTTAAAA-TTTTTTTTTCTGGTTAT---ACAAATACATGCTCATTAAACATTTCACA------------Caattta---------------------ttatttatttatttttgaggttaagagtggaagtctaatgggcaaaacaatgagaaaagctctctctgctgcacagagaggggacctggagaaaatgggtagcccCACGCAAtttttttttttt-tgagacggagtctcactctgtcgcccaggctggagttcagtggcacgatcttggctcactgcaacctccacctgccgggttcaagcaattctcctgcttcagcctcccgagtagctgagactacaggcacatgccaccacacccagctaattttttgtatttttagtagagatggggtttcatcgtgttagccaggacggtctctagctcctgaccttgtgatccacccgcctcagcctcccaaagtgctggaattacaggtgtgagccactgcgcctggccACCCCACACAATTTTTTAAAGCGTAAGAAAAACATCTGAAGTCCTCTAACTGTTAACCATGTTAACCTGTTGGTTTCCATCCTGTACCAATTTCTATGCATTTACACACACATACTTAATTTTACAAAAACGGGATCATAGCATAGTTGCGGTTTCCACTATACACACTTTCCTTTTTTGGCCAGTTTTTGGGTACCTCCTTTAAACTCATTTAACCCCACTCCCCACCAAGTTAAGCCCATTCTTTCTATGTG i ponAbe2.chr9 C 0 C 0 s rheMac3.chr15 97578439 1050 + 112192347 CCATACCATTTGTTTTTGGCAACAGTATACAGTAGACGTTTCTTTTGCTAGAACAGCAGTGTTTCCATAGCCTGCTCCTGAGTGGATTCAGAGTCTCAGGGCCCATGAGCACCCAGGATGCCCTGTGGCTTCACCACTTCCGTCTTGGGCTGGCAGTGTCCCAGTGGGGAGTACAGCAGTGGAAGCCACTTAGGGTCCTGGGAGGTGCTGGTTGTGGGGTTTTAAGAATGCTACTCAAAGGCATACAAGGCGGACAGACAGAGCCTGGAGGTGACTCACAGACACATTTTGGGGAATTAGTAACAAATCACCTTTTTATGTTTTCTTTTAAAATATTTTTTTCTGGTCATACAACAAATATATGCTCATTAAACATTTCACA------------ttatttatttatttatttatttatttatttatttatttatttTtgaggttaagagtggaagtctaatgggcaaaagaatgagcaaagctctctctactgcagagagagaggtcccggagaaaatgggtagccCCACAAAAAAA-ttttttttctgagacggagtctcactctgtcacgcaggctggagtgcagaggtgcgatctcggctcactgcaagctccgcctcccaggttcaagcaatgcttctgcctcagcctcccgagtagctggg-------------------acgcccggctgattttttgtattttaagtagagacagggtttcaccatgttggccaggatggtctcgagctcctgaccttgtgatccacccacctcagactcccaaagtgctggaattacaggcgtgagccaccgcaccccgccGCCCCACACAATTTTTTAAAGTGTAAGAAAAACATCTGAAATCCTGCAACTGTTAACCATGTTAACCTGTTGGTTTCCATCCCATACCAATTTCTATGCATTTACACATACATACTTAATTTTACAAAAATGGGATCATAGCATAGTTGCCGTTTCTACTACATATATTTTCCTTTTTTGGCCACTTTTTGGGTACCTGCTTTAAACTCATTTAACCCCACTCCCCACCAAG-TAAGCCCATTCTTTCTATGTG i rheMac3.chr15 C 0 C 0 s macFas5.chr15 98800506 1063 + 112612857 CCATACCATTTGTTTTTGGCAACAGTATACAGTAGACGTTTCTTTTGCTAGAACAGCAGTGTTTCCATAGCCTGCTCCTGAGTGGATTCAGAGTCTCAGGGCCCATGAGCACCCAGGATGCCCTGTGGCTTCACCACTTCCGTCTTGGGCTGGCAGTGTCCCAGTGGGGAGTACAGCAGTGGAAGCCACTTAGGGTCCTGGGAGGTGCTGGTTGTGGGGTTTTAAGAATGCTACTCAAAGGCATGCAAGGCGGACAGACAGAGCCTGGAGGTGACTCACAGACACATTTTGGGGAATTAGTAACAAATCACCTTTTTATGTTTTCTTTTAAAATATTTTTTTCTGGTCATACAACAAATATATGCTCATTAAACATTTCACATCatttatttatttatttatttatttatttatttatttatttatttatttatttTtgaggttaagagtggaagtcaaatgggcaaaagaatgagcaaagctctctctactgcagagagagaggtcccggagaaaatgggtagccCCACAAAAAAAtttttttttctgagacggagtctcactctgtcacgcaggctggagtgcagaggtgcgatctcggctcactgcaagctccgcctcccaggttcaagcaatgcttctgcctcagcctcccgagtagctggg-------------------acgcccggctgattttttgtattttaagtagagacagggtttcaccatgttggccaggatggtctcgagctcctgaccttgtgatccacccacctcagactcccaaagtgctggaattacaggcgtgagccaccgcaccccgccGCCCCACACAATTTTTTAAAGTGTAAGAAAAACATCTGAAATCCTGCAACTGTTAACCATGTTAACCTGTTGGTTTCCATCCCGTACCAATTTCTATGCATTTACACACACATACTTAATTTTACAAAAATGGGATCATAGCATAGTTGCCGTTTCTACTACATATATTTTCCTTTTTTGGCCACTTTTTGGGTACCTGCTTTAAACTCATTTAACCCCACTCCCCACCAAG-TAAGCCCATTCTTTCTATGTG i macFas5.chr15 I 306 C 0 s papAnu2.chr15 94512639 1067 + 107442819 ccatacTATTTGTTTTTGGCAACAGTATACAGTAGACGTTTCTTTTACTAGAACAGCAGTGTTTCCATAGCCTGCT-CTGAGTGGATTCAGAGTCTCAGGGCCCATGCGCACCCAGGATGCCCTGTGGCTTCACCGCTTCTGTCTTGGGctggcagtgtcccagtggggagtACAGCAGTGGAAGCCACTTAGGGTCCTGGGAGGTGCTGGTTGTGGGCTTTTAGGAATGCTACTCAAAGGCATGCAAGGCGGACAGACAGAGCCTGGAGATGACTCACAGACACATTTTGGGGAATTAGTAACAAAtctcctttttatgttttcttttaaaatatttttttctggtcatACAACAAATATATGCTCATTAAACATTTCACA------------ccgtttgtttatttatttatttatttatttatttatttatttttgaggttaaGAGTGGAAGTCTAATGGGCAAAAGAATGAGCAAAGCTCTCTCTACTGCGGAGAGAGAGGTCCCGGAGAAAATGGGTAGccccacaaaaat--ttttttttctgagacggagtctcactctgtcacccaggctggagtgcagtggtgcgatctcggctcagtgcaagctccgcctcccaggttcaagcaatgcttctgcctcagcctcccgagtagctgggactgcaggcgcccaccaccacgcccggctgattttttgtattttaagtagagacagggtttcaccatgttggccaggatggtctcgagctcctgaccttgtgatccacccacctcagactcccgaagtgctggaattacaggcgtgagccaccacaccccgccgcCCCACACAGTTTTTTAAAGTGTAAGAAAAACATCTGAAATCCTGCAACTGTTAACCATGTTAACCTGTTGGTTTCCATCCCGTACCAATTTCTatgcatttacacacacatacttaaTTTTACAAAAACGGGATCATAGCATAGTTGCCGTTTCTActacatatattttccttttttggccACTTTTTGGGTACCTGCTTTAAACTCATTTAACCCCACTCCCCACCAAG-TAAGCCCATTCTTTCTATGTG i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 98724942 1074 + 108555830 CCATACCATTTGTTTTTGGCAACAGTATACAGTAGACGTTTCTTTTCCTAGAACAGCAGTGTTTCCACAGCCTGCTCCTGAGTGGATTCAGAGTCTCAGGGCCCACGTGCACCCAGGATGCCCTGTGGCTTCACCGCTTCTGTCTTGGGCTGGCAGTGTCCCAGTGGGGAGTACGGCAGTGGAAGCCACTTAGGGTCCTGGGAGGTGCTGGTTGTGGGCTTTTAGGAATGCTACTCAAAGGCATGCAAGGCGGACAGACAGAGCCTGGAGGTGACTCACAGACACATTTTGGGGAATTAGTAACAAATCACCTTTTTATGTTTTCTTTTAAAATATTTTTTTCTGGTCATACAACAAATATATGCTCATTAAACATTTCACACCat--------ttatttatttatttatttatttatttatttatttatttatttTtgaggttaagagtggaagtttaatgggcaaaagaatgagcaaagctctctctactgcagagagagaggtcccggagaaaatgggtagccCCACAAAAAAAtttttttttctgagacggagtctcactctgtcacccaggctggagtgcagtggtgcgatctcggctcactgcaagctccgcctcccaggttcaagcaatgcttctgcctcagcctcccgagtagctgggactgcaggcgcccaccaccacgcctggctgattttttgtattttaagtagagacagggtttcaccatgttggccaggatggtctcgagctcctgaccttgtgatccacccacctcagactcccaaagtgctggaattacaggcgtgagccaccgcaccccgccGCCCCACACAATTTTTTAAAGTGTAAGAAAAACATCTGAAATCCTGCAACTGTTAACCATGTTAACCTGTTGGTTTCCATCCCGTACCAATTTCTATGCATTTACACACACATACTTAATTTTACAAAAACGGGATCATAGCATAGTTGCCGTTTCTACTACATATATTTTCCTTTTTTGGCCACTTTTTGGGTACCTGCTTTAAACTCATTTAACCCCACTCCCCACCAAG-TAAGCCCATTCTTTCTATGTG i chlSab2.chr12 C 0 C 0 e calJac3.chr1 77129860 713 + 210400635 I e nomLeu3.chr1a 76135405 0 - 122973662 C a score=1261488.000000 s hg38.chr9_GL383542v1_alt 50783 557 + 60032 CCTATAAT--TCTGTTAACATATTACAACACTTTAGGTGTTTTT-----------TTTGTCATATTTGGCCAAAAAGGATTAatattttactaatttttctgtatcttgcttttctcactcacagtttggaaattcctccacaccatacagcatagctctcacacattcctaaatgtttacaactagttcatggaatgtacatctcatggtt-cacaagccttgaccaatgcatggacaatccctttgtttcaggcattttatcatgtgttacttgtagaatgatgctgcaataaatattactatataaatgtatacgttggtgtttctattttggttgcctaaattctcaccgtgagccagctgtattgcagaacgcatacttaaatcttaatacatattgccagattactctccaaacagcaacagtaattcacaattccctcagcaataaatgaataccctttctatatatttttgccagcaatagaggttatcattttttgtaatttctgtaaatttgcatatctgaattttagtgtatccttgaagattatttatttctatttAAT s panTro4.chr9 86995485 557 + 137840987 CCTATAAT--TCTGTTAACATATTACAACACTTTAGGTGTTTTT-----------TTTGTCATATTTGGCCAAAAAGGATTAatattttactaatttttctgtatcttgcttttctcactcacagtttggaaattcctccacaccatacagcatagctctcacacattcctaaatgtttacaactagttcatggaatgtacatcttatggtt-cacaagccttgaccaatgcatggacgatccctttgtttcaggcattttatcatgtgttacttgtagaatgatgctgcaataaatattactatataaatgtatacgttggtgtttctattttggttgcctaaattctcacctcgagccagctgtattgcagaatgcatacttcaatctttatacatattgccagattactctccaaacagcaacagcaattcacaattcccttagcaataaatgaatatcctttctatatatttttgccagcaatagaggttatcattttttctaatttctgtaaatttgCATATCTGAATTTTAGTGTATGCTTGAAGATTATTTATTTCTATTTAAC i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83626592 557 + 135191526 CCTATAAT--TCTGTTAACATATTACAACACTTTAGGTGTTTCT-----------TTTGTCATATTTGGCCAAAAAGGATTAATATTTTACTAATTTTTCTGTATCTTGCTTTTCTCACCCACAGTTTGGAAATTCCTCCACACCATACAGCATAGCTCTCACACATTCCTAAATGTTTACAACTAGTTCATGGAACGTACATCTCGTGGTT-CACAAGCCTTGACCAACACATGGATGATGCCTTTGTTTCAGGCATTTTATCATGTGTTACTTGTAGAATGATGCTGCAATAAATATTACTGTGTAAATGTATACGTTGGTGTTTCTGTTTTGGTTGCCTAGATTCTCACCGTGAGCCAGCTGTATTGCAGAACGCATACtttaatcttaatacatactgccagattactctccaaacagcaacagcaattcacaattccctcagcaataaatgaataccctttctatatatttttgccagcaatagaggttatcattttttgtaatttctgtaaatttgcatatctgaaTTTTAGCGTATCCTTGAAGATGATTTGTTTCTATTTAAT i ponAbe2.chr9 C 0 C 0 s rheMac3.chr15 97579489 556 + 112192347 CCTATAATCATATGGTAACATATTACAACACTTTAGGTGTTTCT-----------TTTGTCATATTTGGCCAAAAAGGATTACtattttatgaatatttctgtatcttgcttttctcattcacagtttggaaattcctccacaccgtacagtgtagctctcacacattcctaaatgtttacaactagttcatggaacgtacatctcatggtt-cacaagccttgaccaatgcatggatgatccctttgttttaggcattttatcatgtgttacttgtagaatgatgctgcaataaatattactatataaatgtatatgttggagtttctattttggttgcctagattctcaccgtgagccagctgtattgcagaacacatattttaatcttaatacatattgccagattactctcccaacagaaacagcaattcacagttccctcagcaataaatgaataccctttctacacatttttgtcagcaatagaggttatcattttttgtaatttctgtaaatttgcatatctgaattttagcatatcctt---gattatttatttctatttAAT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 98801569 556 + 112612857 CCTATAATCATATGGTAACATATTACAACACTTTAGGTGTTTCT-----------TTTGTCATATTTGGCCAAAAAGGATTACtattttatgaatttttctgtatcttgcttttctcattcacagtttggaaattcctccacaccgtacagtgtagctctcacacattcctaaatgtttacaactagttcatggaacgtacatctcatggtt-cacaagccttgaccaatgcatggatgatccctttgttttaggcattttatcatgtgttacttgtagaatgatgctgcaataaatattactatataaatgtatatgttgaagtttctattttggttgcctagattctcaccgtgagccagctgtattgcagaacacatattttaatcttaatacatattgccagattactctcccaacagaaacagcaattcacagttccctcagcaataaatgaataccctttctacacatttttgtcagcaatagaggttatcattttttgtaatttcagtaaatttgcatatctgaattttagcatatcctt---gattatttatttctatttAAT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 94513706 556 + 107442819 CCTATAATCATATGGTAACATATTACAACACTTTAGGTGTTTCT-----------TTTGTCATATTTGGCCAAAAAGGATTACTATTTTACGAATTTTTCTGTATGTTGCTTTTCTCATTCACAGTTTGGAAATTCCTCCACACCGTACAGTGTAGCTCTCACACATTCCTAAATGTTTACAACTAGTTCATGGAACGTACATCTCATGGTT-CACAAGCCTTGACCAATGCATGGATGATCCCTTTGTTTTACGCATTTTATCTTGTGTTACTTGTAGAatgatgctgcaataaatatcactatataaatgtatatgttggAGTTTCTATTTAGGTTGCCTAGATTCTCACCATGAGCCAGCTGTATTGCAGAACGCATATTTTAATCTTAATACATATTGCCAGATTACTCTCCCAACAGAAACAGCAATTCACAGTTCCCTCAGCAATAAATGAATACCCTTTCTACACATTTTTGTCAGCAATAGAGGTTATCATTTTTTGTAATTTCTGTAAATTTGCATATCTGAATTTTAGCATATCCtt---gattatttatttctatttaat i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 98726016 556 + 108555830 CCTATAATCATATGGTAACATATTACAACACTTTAGGTGTTTCT-----------TTTGTCATATTTGGCCAAAAAGGATTACtattttacgaatttttctatatcttgcttttctcattcacagtttggaaattcctccacaccgtacagtgtagctctcacacattcctaaacgtttacaactagttcatggaacgtacatctcatggtt-cacaagccttgaccaatgcatggatgatccctttgttttaggcattttatcaggtgttacttgtagaaggatgctgcaataaatattactatataaatgtatatgttggagtttctattttggttgcctagattctcaccgtgagccagctgtattgcagaacgcatattttaatcttaatacatattgccagattactctcccaacagaaacagcaattcacagttccctcagcaataaatgaataccctttctacacatttttgtcagcaatagaggttatcattttttgtaatttctgtaaatttgcatatctgaattttagcatatcctt---gattatttatttctatttaat i chlSab2.chr12 C 0 C 0 s calJac3.chr1 77130573 554 + 210400635 CCTATAATCATATGTTAACATATTTCAAAACTTCAGATGTTTGTGTGTGTGTGTGTGTGTCATATTTGGCc-aaaaggattaatattttacaaatgtttctgtatcttggctttctcagtcacag-ttggaaattcctccatatcatacagtgaagctctcacacattcctaaagatttacaactagtt-----------cctctcatggttacacaagccttgaccaatggatggacagtcactttgtttcacggactttgtcatgtgttacttgtagaatgatgctgcaataaatattaccatgtaaatgtgtatgttggtgcttctgttttgg-tacctagattctcaccgtgagctagctgta-tgcagaacacatattttaatcttaata-atattgccagattactctccaaacagcaacagcaattcacaattccctcagcaataaatcaataccctttcc-tgtatttttgtcagcaatagaggttatcattttctgtaatttttgtaaatttgtatatctgaattttagcatatccttgatgattatttatttctacttaat i calJac3.chr1 I 713 I 2267 e nomLeu3.chr1a 76135405 0 - 122973662 C a score=1408030.000000 s hg38.chr9_GL383542v1_alt 51340 608 + 60032 GACCATTCATATCTTTTGTCATCTTTTACTTTTTCTC--------TATTGCAAAAGTGTTCTTTGTATATTAATGCATTAATTATTTCTCTTTCATAGGCATTGCAAATACGTTTCCAATCTAACATTAGTCTT--GACTTCTTTGGTATTTTTTGTtatttagatgtatatatcatttatatatgtata--tgcatgtgtattatatatatacacaaaacagatattacatacatatgtatataa-tttttatGGAAT-AACTATGTCTATCCAGAGTTTCTGGTTTTTAGTTTGAATTTAAAAAGGTCTCTCTAATCCC-GGATTTACATATATTTTCTTAGATTATTTTCCTAACCATTGCCCTATATCACTGTTTACCTGTGCTTTATTCCATCTGTAATTTTAGTAGATGATGTTAAGAATAGGATTCACTTTTAACTTTTTCCAGATGGATAGTTT--TGTGCCAAAACCGCTTACCAAATCACATTTTCCTCTGAGCTGACAGAGAGACCCTCCCTTGGGACACACTGATTGCCAAAGAACACCAGGATTTCTTTCTG----------------TCCCCACAATCTCTCTGTCCATCCCAGTTTTATGACCAGACTTTCCTGATTACAAACTGT s panTro4.chr9 86996042 608 + 137840987 GACTATTCATATCTTTTGTCATCTTTTACTTTTTCTC--------TACTGCAAAAGTGCTCTTTGTATATTAATGTATTAATTATTTCTCTTTCATAGGCATTGCAAATACGTTTCCAATCTAACATTAGTCTT--GACTTCTTTGGTATTTTTTGTTATTTAGatgtatatatcatttatatatgtata--tgcatgtgtattatatatatacacaaaaca--tattacatacatatgtatataA-TTTTTATGGAAT-AACTATGTCTATCCAGAGTTTCTGGTTTTTAGTTTGAATTTTAAAAAGTCTCTCTAATCCC-GGATTTACATATATTTTCTTAGATTATTTTCCTAACCATTGCCCTATATCACTGTTTACCTGTGCTTTATTCCATCTGTAATTTTAGTAGATGATGTTAAGAATAGGATTCACTTTTAACTTTTTCCAGATGGATAGTTTGTTGTGCCAAAACCGCTTACCAAATCACGTTTTCCTCTGAGCTGACAGAGAGACCCTCCCTTGGGACACACTGATTGCCAAAGAACACCAGGATTTCTTTCTG----------------TCCCCACAATCTCTCTGTCCATCCCAGTTTTATGACCAGACTTTCCTGATTACAAACTGT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83627149 613 + 135191526 GACTATTCATATCTTTTGTCATCTTTTACTTTTTCTCTTTCTAATTATTGCAAAAGTGTTCTTTGTATATTAATGCATTAATTATTTCTCTTTCATAGGCATTGCAAATACATTTCCAATCTAACATTAGTCTT--GA-----TTGGCATTTTTTGTtatttagatgtatatatcatttatatatgtata--tgcatgtgtattttatatatacacaaaacagatattacatacatatgtatataA-TTTTTATGGAAT-AACTATGTCTATCCAGAGTTTCTGGTTTTTAGTTTGAATTTAAAAAGGTCTCTCTAACCCC-GGATTTACATATATTTTCTTAGATTATTTTCCTAACCATTGCCGTATATCACTGTTTACCTGTGctttattccatctgtaattttagtagatgatgttaagaataggattcacttttaactttttccagatggatagtttgttgtgccaaaacggcttagcaaatCACGTTTTCCTCTGAGCTGACAGAGAGACCCTCCCTTGGGACACACTGATTGCCAAAGAACACCAGGATTTCTTTCTG----------------TCCCCACAATCTCTCTGTCCATCCCACTTTTATGACCAGACTGTCCTGATTACAAACTGT i ponAbe2.chr9 C 0 C 0 s rheMac3.chr15 97580045 615 + 112192347 GACTATTCATATCTTTTGTCATTTTTTACTTTTTCTCTTTTTAATTATTGCAAAAGTGTTCTTTGTATATTAATGCATTAATTATTTCTCTTTCATAGGCATTGCAAATACGTTTCCAATCTAACATTAGTCTT--GACTTCTTTGGTATTTTTTGTtatttagatgtatatatcatttatatatgtata--tgtgtgtgtat--tatatatacacaaaacagatattacatacatatgtatataATTTTTTATGGAATCAACTATGTCTATCCAGAGTTTCTGGTTTTTAGTTTGAAtttaaaaaggtctctctaacccctggatttacatatattttcttagattattttcctaaccattgtcctatatcactgtttacctgtgctttattccatctgtaattttagtagatgatgttaagaataggattcactcttaattttttccagatggatagtctgttgtgccaaaaccgcttaccaaatcaccttttcctctgagctgac----agacgcccccttgggacacaccaattgccaaagaacactaggatttctttctg----------------cccccacaatctctctgtctatcctagttttatgaccagactgtcctgattacAAACTGT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 98802125 615 + 112612857 GACTATTCATATCTTTTGTCATTTTTTACTTTTTCTCTTTTTAATTATTGCAAAAGTGTTCTTTGTATATTAATGCATTAATTATTTCTCTTTCATAGGCATTGCAAATACGTTTCCAATCTAACATTAGTCTT--GACTTCTTTGGTATTTTTTGTtatttagatgtatatatcatttatatatgtata--tgtgtgtgtat--tatatatacacaaaacagatattacatacatatgtatataATTTTTTATGGAATCAACTATGTCTATCCAGAGTTTCTGGTTTTTAGTTTGAATTTAAAAAGGTCTCTCTAACCCCTGGATTTACATATATTTTCTTAGATTATTTTCCTAACCATTGTCCTATATCACTGTTTACCTGTGCTTTATTCCATCTGTAATTTTAGTAGATGATGTTAAGAATAGGATTCACTTTTAATTTTTTCCAGATGGATAGTCTGTTGTGCCAAAACCGCTTACCAAATCACCTTTTCCTCTGAGCTGAC----AGACGCCCCCTTGGGACACACCAATTGCCAAAGAACACTAGGATTTCTTTCTG----------------CCCCCACAATCTCTCTGTCTATCCTAGTTTTATGACCAGACTGTCCTGATTACAAACTGT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 94514262 613 + 107442819 gac--ttcatatcttttgtcattttttactttttctctttttaattattgcaaaagtgttctttgtatattaatgcattaattatttctctttcataggCATTGCAAATACGTTTCCAATCTAACATTAGTCTT--GActtctttggtattttttgttatttagatgtatatatcatttatatatgtata--tgtgtgcgtat--tatatatacacaaaacagatattacatacatatgtatgtaattttttatgGAATCAACTATGTCTATCCAGAGTTTCTGGTTTTTAGTTTGAATTTAAAAAGGTCTCTCTAACCCCtggatttacatatattttcttagatTATTTTCCTAACCATTGTCCTATATCACTGTTTACCTGTGCTTTATTCcatctgtaattttagtagatgATGTTAAGAATAGgattcacttttaattttttccagatGGATAGTCTGTTGTGCCAAAACCGCTTACCAAATCACCTTTTCCTCTGAGCTGAC----AGACACCCCCTTGGGACACACCGATTGCCAAAGAACACTAGGATTTCTTTCTG----------------CCCCCACAATCTCTCTGTCTATCCCAGTTTTATGACCAGACTGTCCTGATTACAAACtgt i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 98726572 615 + 108555830 gactattcatatcttttgtcattttttactttttctctttttaattattgcaaaagtgttctttgtatattaatgcattaattatttctctttcataggcattgcaaatacgtttccaatctaacattagtctt--gacttctttggtattttttgttatttagatgtatatatcatttatatatgtaga--tgtgtgtgtat--tatatattcacaaaacagatattacatacatatgtatataattttttatggaatcaactatgtctatccagagtttctggtttttagtttgaatttaaaaaggtctctctaacccctggatttacatatattttcttagattattttcctaaccattgtcctatatcaccgtttacctgcgctttattccgtctgtaattttagtagatgatgttaagaataggattcacttttaattttttccagatggatagtctgttgtgccaaaaccgcttaccaaatcaccttttcctctgagctgac----agacacccccttgggacacaccaattgccaaagaacactaggatttctttctg----------------cccccacaatcgctctgtctatcctagttttatgatcagactgtcctgattacAAACTGT i chlSab2.chr12 C 0 C 0 s calJac3.chr1 77133394 628 + 210400635 GACTATTCATATCTTTTGTCATCTTTTACTTTTTCTCTTTCTAATTATTGCAAAAGTGTTCTTTGTATATTAATGCATT-ATTGTTTCTCTTTCATAAGCATTGCAAATATGTTTCCAATCTAACATTAGTCTTTAGACTTCTTTGGTA-TTTTTGTtatttatatgtatatatcagttatgtgtatatatttgtatgtgtat--tacctatacac-aaacagatattacatacatatgtatataA-TTTTTATGGAATCAGCTATGTCTATTCAGAGTTTCTGGTTTTTAGTTTGAATTTAGAAAGGTGTCTCTAACGCCTGGATTTACATATATTTTCTTAGATTATTTTCCTAACCATTTTCCTCTATCACTGTTTCCCTGTGcttta-tccatctgtaatttgagtagatga---taagaataggattcacttttaattttttccagatggatagtttgttgtgccaaaaccatttaccaaatCACCTTTTCCTCTGAGCTGACAGAGAGAC---CCCCTGGGACACACTGATTGCCAAAGAACACCAAGATGTCTTTCTGTCCAGGATCTCTTTCTCCCCCACAATCTCTCTGTTAGTCCCAGTTTCATGACTGGACTGTCCTGATTACAAACTGT i calJac3.chr1 I 2267 C 0 e nomLeu3.chr1a 76135405 0 - 122973662 C a score=1013355.000000 s hg38.chr9_GL383542v1_alt 51948 635 + 60032 Gtttgc--ttttttttcttttttt-gagacggagtcttgctctgtggccaggctgcag-------------------------------------------------tgcagtggcacaatctcggctcactgcaacctctgcctcccgggtccTGGtaagggagga------------------------------gaacacccctcatactgtcttatgcccaatttctgcctccaaagaaagaagaagtaaaaactaaaaggcagaaatgaaatccacaggcag-------------acagcccagcgccacaccctgggcctgatagttaaagatcgacccctgacctaattggttatgttatctatagattccagacattat------atggaagagcactgtgaaaatccctgtcctgttctgttccattctaattaccggtgcatgcagcccccagtcacgtac------------------------ccgctgcttgctcaatccatcacaaccctctcacgcggacccccttagagttgtaagcccttaagagggacaggaattgctcactcggggaactcagttgttgggagacgtgagtcttgccgaagctcccggccgaataaagcccttccttttttaacttggtgtctgaggggttttgtctatggcttgtcctgctacaccgggttcaagcaattctcctgcctcagcctcccgaatagctgggactacaggcacgcgccaccat s panTro4.chr9 86996650 635 + 137840987 GTTTGC--ttttttttcttttttt-gagacggagtcttgctctgtggccaggctgcag-------------------------------------------------tgcagtggcacaatctcggctcactgcaacctctgcctcccgggtcctggtaagggagga------------------------------gaacacccctcatactgtcttatgcccaatttctgcctccaaagaaagaagaagtaaaacctaaaaggcagaaatgaaatccacaggcag-------------acagcccagtgccacaccctgggcctgatagttaaagatcgacccctgacctcattggttatgttatctatagattccagacattgt------atggaagagcactgtgaaaatccctgtcctgttctgttccattctaattaccggtgcatgcagcccccagtcacgtac------------------------ccgctgcttgctcaatccatcacaaccctctcacgcggacccccttagagttgtaagcccttaagagggacaggaattgctcactcagggaactcagttgttgggagacgtgagtcttgccgaagctcccggccgaataaagcccttccttctttaacttggtgtctgaggggttttgtctatggcttgtcctgctacaccaggttcaagcaattctcctgcctcagcctcccgagtagctgggactacaggcacgcgccaccat i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83627762 648 + 135191526 Gtttgc--ttctttttcttttttt-gagatggagtcttgctctgtggccaggctgcag-------------------------------------------------tgcagtggcacaatctcggctcgttgcaacctctgcttcccgggtccTGGtaagggagga------------------------------gaacacccctcatattgtcttatgcccaatttctgccttcaaagaaagaagaagtaaaaactaaaaggcagaaatgaaatccacaagcagacagcccagggccacagcccagggccacatcctgggcctgatagttaaagattgacccccgacctaattgtttatgttatctatagattgcagacattgt------acggaaaagcactgtgaaaatccctgtcctgttctgttccgttctaattaccggtgcatgcagcccccagtcacgtac------------------------ccgctgcttgctcaatccatcacaaccctctcacgaggacccccttagagttgtaagcccttaagagggacaggaattgctcactcggggaactcagttgttgggagacatgagtcttgccgaagctcccagccaaataaagcccttccttctttaacttggtgtctgaggggttttgtctgtggcttgtcctgctacaccgggttcaagtaattctcctgcctcagcctcctgagtagctgggactacaggcacccaccaccat i ponAbe2.chr9 C 0 C 0 s rheMac3.chr15 97580660 656 + 112192347 GTTTGC--TTTTTTTTTTTTTTTTATAG--------------------------GGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------------------------------------------------------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcacccctcatattgtcttatgcccaatttctgcctccaaagaaagaagaagtaaaaactaaaaggcagaaatgaaatccacaggcag-------------acagcccagcgccacaccctgggcctggtagttcaaaatcgacccctgacctaatcagttatgttatctatagattaccgacattgtatggaaatggaaaagcactgtgaaaatccctgtcctgttccgttccactctaattaccagtgcatgcagcccccagtcacatacctgctgcagcccccagtcacatatctgctgcttgcttaatcgatcacgaccctctcacgcagaccctcttagagttgtgagcccctaagagggacaggaattgctccctcagggagctgggttgtt-ggagatgtgagtcttgctgatgctccaggccgaataaagcccttccttctttaactcggtgtctgaggggttttgtctgttactcatcctgctaca-caggttcaagcaattctcctgcctcagcctcccgagtag-tgggactacaggcatgcaccaccaa i rheMac3.chr15 C 0 C 0 s macFas5.chr15 98802740 665 + 112612857 Gtttgcttttttttttttttttttatagacggagtcttgctctgtggccaggctggag-------------------------------------------------tgcagtggcatgatcttggcttactgcaacctctgcctcccggAGCCTGGtaagggagga------------------------------gaccacccctcatattgtcttatgcccaatttctgcctccaaagaaagaagaagtaaaaactaaaaggcagaaatgaaatccacaggcag-------------acagcccggcgccacaccctgggcctggtagttcaaaatcgacccctgacctaatcagttatgttatctatagattaccgacattgtatggaaatggaaaagcactgtgaaaatccctgtcctgttccgttccactctaattaccagtgcatgcagcccccagtcacatacctgctgcagcccccagtcacatatctgctgcttgcttaatcgatcacgaccctctcacgcggaccctcttagagttgtgagcccctaagagggacaggaattgctccctcagggagctgggttgtt-ggagatgtgagtcttgctgatgctccaggccgaataaagcccttccttctttaactcggtgtctgaggggttttgtctgttactcatcctgctaca-caggttcaagcaattctcctgcctcagcctcccgagtag-tgggactacaggcatgcaccaccaa i macFas5.chr15 C 0 C 0 s papAnu2.chr15 94514875 656 + 107442819 gttggc--tttttttttttttttt-tagacggagtcttgctctgtggccaggctggag-------------------------------------------------tgcagtggcatgatcttggcttactgcaacctctgcctcccggagcCTGGTAAGGGAGGA------------------------------GActacccctcatattgtcttatgcccaatttctgcctccaaagaaagaagaagtaaaaactaaaaggcagaaatgaaatccacaggcag-------------acagcccggcgccacaccctgggcctggtagttaaaaatccacccctgacctaatcagttatgttatctatagattaccgacattgt------atggaaaagcactgtgaaaatccctgtcctgttccgTTCCActctaattaccagtgcatgcagcccccagtcacatacctgctgcagcccccagtcacatacctgCTGCTTGCTTAATcgatcacgaccctttcacgcaGACCctcttagagttgtgagcccctaagagggacaggaattgctcactcagggagctggGTTGTT-GGAGATGTGAGTCTTGCTGATGCACCAGgccgaataaagcccttccttctttaactcggtgtctgaggggttttgtctgttaCTCATCCTGCtaca-caggttcaagcaattctcctgcctcagcctcccgagtag-tgggactacaggcatgcgccaccaa i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 98727187 629 + 108555830 Gtttgc--ttttttttttttt----tagacagagccttgctctgtggccaggctggag-------------------------------------------------tgcagtggcatgatcttggcttactgcaacctctgcctcccggAGCCTGGtaagggagga------------------------------gaccacccctcatattgtcttatgcccaatttctgcctccaaagaaagaagaagtaaaaactaaaaggcagaaatgaaatccacaggcag-------------acagcccggcgccacaccctgggcctggtagttaaaaatcgacccctgacctaatcagttatgttatctatagattaccgacattgt------atggaaaagcactgtgaaaatccctgtcctgttctgttccactctaattaccagtgcatgcagcccccagtcacatac------------------------ctgctgcttgcttaatcgatcacgaccctctcacgcagaccctcttagagttgtgagcccctaagagggacaggaattgctcactcagggagctgggctgtt-ggagatgtgagtcttgctgatgctccaggcggaataaagcccttccttctttaactcggtgtctgaggagttttgtctgttactcatcctgctaca-caggttcaagcaattctcctgcctcagcctcccgagtag-tgggactacaggcatgcgccaccaa i chlSab2.chr12 C 0 C 0 e calJac3.chr1 77134022 0 + 210400635 C e nomLeu3.chr1a 76135405 0 - 122973662 C a score=212829.000000 s hg38.chr9_GL383542v1_alt 52583 100 + 60032 gcccagctaatttttgtgtttttagtagagacagggtttcaccatgttggccaggatggtctcaatcttttgaccttgcgatccgcccgccttggcctcc s panTro4.chr9 86997285 75 + 137840987 gcccagctaatttttgtatttttagtagaga-------------------------tggtctcaatcttttgaccttgtgatctgcccgccttggcctcc i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83628410 100 + 135191526 gcccagctaatttttgtatttttagtagagacagggtttcaccatgttggccaggatggtctcaatctcttgaccttgtgatccgcccgccttggcctcc i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76135405 99 - 122973662 gctcggctaatttttgtatttttagtagagaca-ggtttcaccatgttggccaggatggtctcaatctcttgacctcaagatccgcccgccttgacctcc i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 97581316 100 + 112192347 gcccagctaatttttgtgattttagtagagacagggtttcaccatgttggccaggatggtctcaatctcttgacctcatgatccacccgcctccgcctct i rheMac3.chr15 C 0 C 0 s macFas5.chr15 98803405 100 + 112612857 gcccagctaatttttgtgattttagtagagacagggtttcaccatgttggccaggatggtctcaatctcttgacctcatgatccacccgcctccgcctct i macFas5.chr15 C 0 C 0 s papAnu2.chr15 94515531 100 + 107442819 gcccagctaatttttgtgattttagtagagacagggtttcaccatgttggccaggatggtctcaatctcttgacctcatgatccacccgcctccgcctct i papAnu2.chr15 C 0 I 311 s chlSab2.chr12 98727816 100 + 108555830 gcccagctaatttttgtgattttagtagagacagggtttcaccatgttggccaggatggtctcaatctcttgacctcatgatccacccgcctccgcctct i chlSab2.chr12 C 0 C 0 e calJac3.chr1 77134022 0 + 210400635 C a score=101891.000000 s hg38.chr9_GL383542v1_alt 52683 42 + 60032 taaagtg---ctgagactacaagcgtgagccaccTTTAGGTTTAG s panTro4.chr9 86997360 42 + 137840987 taaagtg---ctgagactacaagcgtgagccaccTTTAGGTTTAG i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83628510 42 + 135191526 tgaagtg---ctgagactacaagcgtgagccaccTTTAGGTTTAG i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76135504 42 - 122973662 taaagtg---ctgagattacaggcgtgagccaccTTTAGGTTTAA i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 97581416 45 + 112192347 taaagtgcctctgagattacaggcgtgagccaccTTTAGGTTTAG i rheMac3.chr15 C 0 C 0 s macFas5.chr15 98803505 42 + 112612857 taaagtg---ctgagattacaggcgtgagccaccTTTAGGTTTAG i macFas5.chr15 C 0 C 0 s papAnu2.chr15 94515942 42 + 107442819 taaagtg---ctgagattacaggtgtgagccacctttaGGTTTAG i papAnu2.chr15 I 311 C 0 s chlSab2.chr12 98727916 42 + 108555830 taaagtg---ctgagattacaggcgtgagccaccTTTAGGTTTAG i chlSab2.chr12 C 0 C 0 e calJac3.chr1 77134022 0 + 210400635 C a score=3990454.000000 s hg38.chr9_GL383542v1_alt 52725 1404 + 60032 GTTTGCCTTTTTACC--AACTCTGCACTGCGGCAGAACCTCCAGTGCTCGCCAGAAGTCTATTCTCGCTTCCCCTAGCAAAAGAGGCTGCATCTCC-----------------------GGGCCTGGGTCTGGCCAAGGCGGTGGTCCTCACTGCTGCCCT------GTGCCCCTTCCTGGAGCTGGGGAAGGCAACTGGGAGCGTGCCGGTAACAG---CAACACCTGTGCCACGCCGGGCCTCCGACTGTGGCTTTAGAGCCGAGGCCTACCCATCCTGACG-CGGCACCCGGACTCTGCGTGGAGGGAAATGAACTTGATTCTAAGGGCCTGAGTTTCAGGCGCTCTGTTGCTGAAGCCCAGCTCCCGCCAAAGGGAGAGGGAGAGGCGCACTTCACCTGCCGTTTGC--TTTATTCTCATATTGATTTACCTCCGTATCTCCAAATAATCTGCTCGTTTCACCCTTTCTTGATTTATAACTCTGAAATACTATTAGCTTCAGGCAACTAAATATTAGACTCAAATACACTAACCAGACTTTCAATTCCCAATTTCCTTAGCAGAGGGCCCTCTAGGTTCCCCTTTCT-----------------CCCAAAGTCCCCTTCCCCCAAAACCTCCTGGCTCCATGGGCAGGGCTGGGTGCGGGGAGCTGCGGGC------GGGGGCAGATGCAGCTGCCACAGCTCCTCCCCAGATTTCA-CGCCTC---GCTGCTTTCACCCCCACCCCCGCAGCCTGGGGGATCATCAGGCACACCAGGAAGCCCTCCCCTCCTCTGCAGGCCTTGCACATGCATTGGGAGCTGTAGCTGTCCGCCTTTTTTCCTCCAACAATGCCTATGATCTATTTTCCAGCTTCCAAAAATAAATTGAAATTTCCCCATCAACTGTTAACGTCCCTTCCCATTCTTTTCACTCTTAGGGATTTTTTTCCTACAGATTTATTTTTCCATGCATTCCCCACTGCCCTCAGCCTTTTTGGTAACTGGGTCCAGGTCAGCCAAGCAGTGTTTAGGACACTGTTTCCTAAGCATTGGCGGTGGTGACCTAGTGGCACCAAGAATTCCCTCAGAAACTTAATAATGATGCAAACCCCCAAGTGTCCTCTGTAGTGGGTCTGGCATGGGCTCTGGAAACGGAGCGTTACATCCCTCCTGGGAGACTAAAGCATGTCTCACCTTGGGAACCATGGCGTGCAGAGTCTCTGCTAGCGGACACTTGGgggctgaattgta-------ccgctcccacaaattcctatgttgaagccctaacagccaggacctcagaatgtggctgtattcgaagatgggggtcttta-------------------------------ggccgggtgcggtggctcatgcctgtaatcccggcactttgggaggctgaggtgggtggatcac--gaggtcaagagatcgagaccatcctggctaacatggtgaaacctcgtctctactaaaaat-aaaaaaaa- s panTro4.chr9 86997402 1405 + 137840987 GTTTGCGTTTTTACC--AACTCTGCACTGCGGCAGAACCTCCAGTGCTCGCCAGAAGTCTATTCTCGCTTCCCCTAGCACAAGAGGCTGCATCTCC-----------------------GGGCCTGGGTCTGGCCAAGGCAGTGGTCCTCACTGCTGCCCT------G-GCTCCTTCCTGGAGCTGGGGAAGGCAACTGGGAGCGTGCCGGTAACAG---CAACACCTGTGCCACGCCGGGCCTCCGACTGTGGCTTTAGAGCCGAGGCCTACCCATCCTGACGGCGGCACGCGGACTCTGCGGGGAGGGAAATGAACTTGATTCTAAGGGCCTGAGTTTCAGGCGCTCTGTTGCTGAAGCCCAGCTCCCGCCAAAGGGAGAGGGAGAGGCGCACTTCACCTGCCATTTGC--TTTATTCTCATATTTATTTACCTCCGTATCTCCAAATAATCTGCTCGTTTCACCCTTTCTTGATTTATAACTCTGAAATACTATCAGCTTCAGGCAACTAAATATTAGACTCAAATACACTAACCAGACTTTCAATTCCCAATTTCCTTAGCAGAGGGCCCTCTAGGTTCCCCTTTCT-----------------CCCACAGTCCCCTTCCCCCAAAACCTCCTGGCTCCATGGGCAGGGCTGGGTGCGGGGAGCTGCGGGC------GGGGGCAGATGCAGCTGCCACAGCTCCTCCCCAGATTTCA-CGCCTC---GCTGCTTTCACCCCCACCCCCGCAACCTGGGGGATCATCAGGCACACCAGGAAGCCCTCCCCTCCTCTGCAGGCCTTGCACATGCATTGGGAGCTGTAGCTGTCCGCCTTTTTTCCTCCAACAATGCCTATGATCTATTTTCCAGCTTCCAAAAATAAATTGAAATTTCCCCATCAACTGTTAACGTCCCTTCCCATTCTTTTCACTCTTAGGGATTTTTTTCCTACAGATTTATTTTTCCATGCATTCCCCACTGCCCTCAGCCTTTTTGGTAACTGGGTCCAGGTCAGCCAAGCAGTGTTTAGGACACTGTTTCCTAAGCATTGGCGGTGGTGACCTAGTGGCACCAAGAATTCCCTCAGAAACTTAATAATGATGCAAACCCCCAAGTGTCCTCTGTAGTGGGTCTGGCATGGGCTCTGGAAACGGAGCGTTACATCTCTCCTGGGAGACTAAAGTATGTCTCACCTTGGGAACCATGGCGTGCAGAGTCTCTGCTAGCGGACACTTGGgggctgaattgta-------ccactcccacaaattcctatgttgaagccctaacagccaggacctcagaatgtggctgtattcgaagatgggggtcttta-------------------------------ggccgggcgcggtggctcatgcctgtaatcccggcactttgggaggctgaggtgggtggatcac--gaggtcaagagatcgagaccatcctggctaacatggtgaaacctcgtctctactaaaaataaaaaaaaa- i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83628552 1397 + 135191526 GTTTGCCTTTTTACC--AACTCTGCACTGCGGCAGAACTATCAGTGCTCTCCAGAAGTCTATTCCCGCTTACCCTAGCACAAGTGGCTGCATCTCC-----------------------GGGCCTGGGTCTGGCCAAGGCGGTGGTCCTCACTGCTGCCCT------GTGCCCCTTCCTGGAGCTGGGGAAGGCAACTGGGAGCGTGCCGGTAACAG---CAACACCTGTGCCACGCCGGGCTTCCGACTGTGGCTTTAGAGCCGAGGCCTACCCATCCTGACC-CCGCA---GGACTCTGCATGGAGGGAAATGAACTTGATTCTAAGAGCCTGAGTTTCAGGCGCTCTGTTACTGAAGCCCAGCTCCCGCCAACGGGAGAGGGAGAGGCGCACTTCACCTGCCGTTTGC--TTTATTCTCATATTTATTTACCTCCGAATCTCCAAATAATCTGCTCGTTTCACCCTTTCTTGATTTATAACACTGAAATACTATTAGCTTCAGGCAACTAAATATTAGACTCAAATACACTAACCAGACTTTCAATTCCCAATTTCCTTAGCAGAGGGCCCTCTAGGTTCCCCTTTCT-----------------CCCAAAGCCCCCTTCCCCCAAAACCTCCTGGCTCCATGGGCAAGGCTGGGTGCGGGGAGCTGCGGGC------GGGGGCAGATGCAGCTGCCACAGCTCCTCCCCAGATTTAA-CGCCTC---GCTGCTTTCACCCCCA-CCCCGCAGCCTGGGGGATCATCAGGCACACCAGGAAGCCCT-CCCTCCTCTGCAGGCCCTGCACATGCATTGGGAGCTGTAGCTCTCCGCCTTTTTTCCTCCAACAATGCCTATGATCTATTTTCCAGCTTCCAAAAATAAATTGAAATTTCCCCATCAACTGTTAACGTCCCTTCCCATTCTTTTCACTCTTAGGGA-TTTTTTCCTACAGATTTATTTTTCCATGAATTCCCCACTGCCCTGAGCCATTTTGGTAACTGGGTCCAGGTCAGTCAAGCAGTGTTTAGGACACTGTTTCCTAAGCATTGGCGGTGGTGACCTAGTGGCACCAAGAATTCCCTCAGAAACTTAATAATGATGCAAATCCCCAAGTGTCCTCTGTAGTGGGTCTGGCAAGGGCTCTGGAAACAGAGCGTTACATCTCTCCTGGGAGACTAAAGCACGTCTCACCTTGGGGACCATGGCGTGCAGAGTCTCTGCTAGCGGACACTTGGgggctgaattgta-------ccactcccccaaattcctatgttgaagccctaacagccaggacctcagaatgtggctgtattcaaagataggggtcttta-------------------------------ggccaggcgcggtggctcatgcctgtaatcccggcactttgggaggctgaggcgggtggatcac--aaggtca--agattgagaccatcctggctaacacggtgaaacctcgtctctactaaaaataaaaaaaaa- i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76135546 1399 - 122973662 GTTTGCCTTTTTACCTAAACTCTGCACTGCGGCAGAACCTCCAGCGCTCACCAGAAGTCTATTCCCGTTTCCCCTAGCACAAGTGGCTGCGTCTCC---------------------G-GGGCCTGGGTCTGGCCAAGGCGGTGGTCCGCACTGCCGCCCT------GTGCCCCTTCCTGGAGCTGGGGAAGGCAACTGGGAGCGTGCCGGTAACAG---CAACACCTGTGCCACGCCGGGCCTCCCACTGTGGCTTTAGAGCAGAGGCCTATCCATCCTGACG-CCGCAGCCCGACTCTGCGTGGAGGCAAATGAACTTGGTTCTAAGGGCCTGAGTTTCAGGCGCTCTGCTGCTGAAGCCCAGCTCCCGCCAACGGGAGAGGGAGAGGCGCACTTCCCCTGCCGTTTGC--TTTATTCTCATATTTATTTACCTCCGTATCTCCAAATAATCTGCTCGTTTCACCCTTTCTTGATTTATAACACTGAAATACTATTAGCTTCAGGCAATTAAATATTAGACTCAAATACACTAACCAGACTTTCAAGTCCCAATTTCCTTAGCAGAGGGCCCTCTAGGTTCCCCTTTCT-----------------CCCAAAGCCCCCTTCCACCAAAACCTCCTGGCTCCATGAGCAGGGCTGGGTGCCGGGAGCTGCGGTCGGGCGGGGGGGCAGATGCAGCTGCCACAGCTCCTCCCCGGATTTCACCGCCTC---GCTGCTTTCAACCCCACCCCCGCAGCCTGGGGGATCATCAGGCACACCAGGGAGCCCTCCCCTCCTCTGCAGGCCCTGCACATGCATAGGGAGCTGTAGCTATCCGCTCTTTTTCCTCCAACAATGCCTATGATCTATTTTCCAGCTTCCAAAAATAAATTGAAATTTCCCCATCAACTGTTAACGTCCCTTCCCATTATTTTCACTCTTAGGGA-TTTTTTCCTACAGATTTATTTTTCCATGCATTCCCCACTGCCCTGAGCCATTTTGGTAACTGGGTCCAGGTCAGCCAAGCAGTGTTTAGGACACTGTTTCCTAAGTATTGGCGGTGGTGACCTAGTGGCACCAAGAATTCCTTCAGAAACTTAATAATGATGCAAACCCCCAAGTGTCCTCTGTAGTGGGTCTGGCATGGGCTCTGGAAACGGAGCGTTACATCTCTCCTGGGAGACTAAAGCACGTCTCACCTTGGGGACCATGGTGTGCAGAGTCTCTGCTAGCGGACACttaggggctgaattgta-------ccactcccctaaattcctctgttgaagccctaacagccaggacctcagaatgtggctgtatttgaatatgggggtcttta-------------------------------ggccgggcgcggtggctca--------------gcactttgggaggccgaggcaggtggatcac--aaggtcaagagatcgagaccatcctggctaacacggtgaaacctcgtctcaactaaaaaa-taaaaaaa- i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 97581461 1410 + 112192347 GTTTGCCTTTTTACCTAAACTTTGCAGTGAGGCAAAACCTCCAGCGCTGGCCAGAAGTCTATTCCTGCTTCCCCTAGCAC-AGTGGCTGCGTCTCC---------------------GCGGGCCTGGGTGCGGCCAAGGCCATGGTCCGCACTGCTGTCCTCCAGTCGTGCCCCTTCCTGCGGCTGGGGAAGGCAACTGGGCGCTTGCCGGTGACAGCTACAGCACCTGTGCCACGCCGGGCCTCCGACTGTGGCTTTAGAGCCGAAGCTTACTCATCCTGATG-CCACAGCCCGACTCTGCGTGGAGGGAAATGAACTTGGTTCTAAGGACCT--GTTTCAGACCCTCTGTTGCTGAAGCCCAGCTCCCGCCAACAGGAGAGGGAGAGGGGCACTTCACCTGCCGCTTGC--TTTATTCTCGTATTTATTTACCTCCATATCTCCAAATAATCTGCTCATTTCACCTTTTCTTGATTTATAAAATTGAAATACTATTAGCTTCAGGCAATTAAATATTAGACTCAAATACACTAACCAGACTTTCAATTCCCGGTTTCTTTAGCAGAGGGCCCTCCTGGTTCCCCTTTCT-----------------CCCAAAGCCCCCTTCCCCCAAAACCTCCTGGCTCCGT-GGCAGGGCTGGGTGCGGGGAGCTGCGGGT------GGGGTCAGAGGCAGCTGCCACAGCTCCTCCCCGGATTTCACCGCCTC---GCCGCTTTCACCCCCACCCCTGCAGCCTCAGGGATCATCAGGCACACCAGGGAGCCCTCCCCTCCTCTGCAGGCCCTGCCCATGCACTGGGAGCTGTAGCTGTCCGCTCTTTTTCCTCCAACAATGCCTGTGATCTATTTTCCAGCTTCCAAAAATAAATAGAAATTTCCCCATCAACTGTTAACGTCCCTTCCCAGTCTTTTCACTCTCAGGGA-TTTTTTCCTACAGATTTATTTTTTCATGCATTCCCCACCACCCTGAGCCATTTTGGTAACTGAGTCCAGGTCAGCCAAGCAGTG--TAGGACACTGTTTCCTAAGCATTGGCTGTGGTGACCTAGTGGCACCAAGAATTCCCTCAGAAACTTAATAACGATGCAAACCCCCAAGTGTCCTCTTTAGTAGGTCTGTCATGGGCTCTGGAAATGGAGCGTTACATCTCTCCTGGGAAACTAAAGCACGTCTCGCCTCGAGGACCATGGCGTGCACAGTCTCTGCTAGTGGACACTTGGgggctgaatttta-------ccactccaccaaattcctatgttgaagccctaacagccaggacctcagaatgtggctgtattcaaagatgggggtcttta-------------------------------ggccgggcgcggtggctcacttctgtaatcccagcactttgggaggatgaggtgggcagatcac--gaggtcaggagatcgagatcatcctggctaacatggtgaaaccctgtctctactaaaaa--atacaaac- i rheMac3.chr15 C 0 C 0 s macFas5.chr15 98803547 1410 + 112612857 GTTTGCCTTTTTACCTAAACTTTGCAGTGAGGCAAAACCTCCAGCGCTGGCCAGAAGTCTATTCCTGCTTCCCCTAGCAC-AGTGGCTGCGTCTCC---------------------GCGGGCCTGGGTGCGGCCAAGGCCATGGTCCGCACTGCTGTCCTCCAGTCGTGCCCCTTCCTGCGGCTGGGGAAGGCAACTGGGCGCTTGCCGGTGACAGCCACAGCACCTGTGCCACGCCGGGCCTCCGACTGTGGCTTTAGAGCCGAAGCTTACTCATCCTGATG-CCACAGCCCGACTCTGCGTGGAGGGAAATGAACTTGGTTCTAAGGACCT--GTTTCAGACCCTCTGTTGCTGAAGCCCAGCTCCCGCCAACAGGAGAGGGAGAGGGGCACTTCACCTGCCGCTTGC--TTTATTCTCGTATTTATTTACCTCCATATCTCCAAATAATCTGCTCATTTCACCTTTTCTTGATTTATAAAATTGAAATACTATTAGCTTCAGGCAATTAAATATTAGACTCAAATACACTAACCAGACTTTCAATTCCCGGTTTCTTTAGCAGAGGGCCCTCCTGGTTCCCCTTTCT-----------------CCCAAAGCCCCCTTCCCCCAAAACCTCCTGGCTCCGT-GGCAGGGCTGGGTGCGGGGAGCTGCGGGT------GGGGTCAGAGGCAGCTGCCACAGCTCCTCCCCGGATTTCACCGCCTC---GCCGCTTTCACCCCCACCCCTGCAGCCTCAGGGATCATCAGGCACACCAGGGAGCCCTCCCCTCCTCTGCAGGCCCTGCCCATGCACTGGGAGCTGTAGCTGTCCGCTCTTTTTCCTCCAACAATGCCTGTGATCTATTTTCCAGCTTCCAAAAATAAATAGAAATTTCCCCATCAACTGTTAACGTCCCTTCCCAGTCTTTTCACTCTCAGGGA-TTTTTTCCTACAGATTTATTTTTTCATGCATTCCCCACCACCCTGAGCCATTTTGGTAACTGAGTCCAGGTCAGCCAAGCAGTA--TAGGACACTGTTTCCTAAGCATTGGCTGTGGTGACCTAGTGGCACCAAGAATTCCCTCAGAAACTTAATAACGATGCAAACCCCCAAGTGTCCTCTTTAGTAGGTCTGTCATGGGCTCTGGAAATGGAGCGTTACATCTCTCCTGGGAAACTAAAGCACGTCTCGCCTTGAGGACCATGGCGTGCACAGTCTCTGCTAGTGGACATTTGGgggctgaatttta-------ccactcccccaaattcctatgttgaagccctaacagccaggacctcagaatgtggctgtattcaaagatgggggtcttta-------------------------------ggccgggcgcggtggctcacttctgtaatcccagcactttgggaggatgaggtgggcagatcac--gaggtcaggagatcgagatcatcctggctaacatggtgaaaccctgtctctactaaaaa--atacaaac- i macFas5.chr15 C 0 C 0 s papAnu2.chr15 94515984 1406 + 107442819 GTTTGCCTTTTTACCTAAACTTTGCAGTGAGGCAGTACCTCCAGCGCTGGCCAGAAGTCTATTCCTGCTTCCCCTAGCCC-AGTGGCTGCGTCTCC---------------------GCGGGCCTGGGTGCGGCCAAGGCCGTGGTCCGCACTGCTGTCCTCCAGTCGTGCCCCTTCCTGCGGTTGGGGAAGGCAACTGGGCGCTTGCCGGTGACAGCCACAGCACCTGTGCCACACCGGGCCTCCGACTGTGGCTTCAGAGCCGAAGCTTACTCATCCTGATG-CCACAGCCCGACTCTGCGTGGAGGGAAATGAACCTGGTTCTAAGGACCT--GTTTCAGGCCCTCTGTTGCTGAAGCCCAGCTCCCGCCAAcgggagagggagaggggcacTTCACCTGCCGCTTGC--TTTATTCTCGTATTTATTTACCTCCATGTCTCCAAATAATCTGCTCATTTCACCTTTTCTTgatttataaaattgaaatacTATTAGCTTCAGGCAATTAAATATTAGACTCAAATACACTAACCAGACTTTCAATTCCCAGTTTCTTTAGCAGAGGGCCCTCCTGGTTCCCCTTTCT-----------------CCCAAAGCCCCCTTCCCCCAAAACCTCCTGGCTCca--ggcagggctgggtgcggGGAGCTGCGGGT------GGGGTCAGAGGCAGCTGCCACAGCTCCTCCCCGGATTTCACCGACTG---GCTGCTTTCACCCCCACCCCCGCAGCCTCGGGGATCATCAGGCACGCCAGGGAGCCCTCCCCTCCTCTGCAGGCCCTGCACATGCACTGGGAGCTGTAGCTGTCCGCTCTTTTTCCTCCAACAATGCCTGTGATCTATTTTCCAGCTtccaaaaataaattgaaatttccCCATCAACTGTTAACGTCCCTTCCCAGTCTTTTCACTCTCAGGGA-TTTTTTCCTACAGAt---ttttttCATGCATTCCCCACTGCCCTGAGCCATTTTGGTAACTGAGTCCAGGTCAGCCAAGCAGTG--TAGGACACTGTTTCCTAAGCATTGGCTGTGGTGACCTAGTGGCACCAAGAATTCCCTCAGAAACTTAATAACGATGCAAACCCCCAAGTGTCCTCTTTAGTGGGTCTGTCATGGGCTCTGGAAATGGAGCGTTACATCTCTCCTGGGAAACTAAAGCACGTCTCACCTTGAGGACCATGGCGTGCACAGTCTCTGCTAGTGGACACTTGGGGGCTGAATTTTA-------CCACtcccccaaattcctatgttgaagccctaacagccaggacctcagaatgtggctgtatTCAAAGATGGGGGTCTTTA-------------------------------GGGCGGGCGtggtgtctcactcctgtaatcccagcactttgggaggaggaggtgggcagatcac--gaggtcaggagatggagatcatcctggctaacatggtgaaaccctgtctctactaaaaa--atacaaac- i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 98727958 1428 + 108555830 GTTTGCCTTTTTACCTAAACTTTGCAGTGAGGCAGAACCTCCAGCGCTGGCCAGAAGTCTATTCCTGCTTCCCCTAGCAC-AGTGGCTGCGTCTCC---------------------ACGGGCCTGGGTGCGGCCAAGGCCATGGTCCGCACTGCTGTCCTCCAGTCGTGCCCCTTCCTGCCGCTGGGGAAGGCAACTGGGCGCTTGCCGGTGACAGCCACAGCACCTGTGCCACGCCAGGCCTCCGACTGTGGCTTTAGAGCCAAAGCTTACTCATCCTGATG-CCACAGCCCGACTCTGCGTGGAGGGAAATGAACCTGGTTCTAAGGACCT--GTTTCAGGCGCTCTGCTGCTGAAGCCCAGCTCCCGCCAACGGGAGAGGGAGAGGGGCACCTCACCTGCCGCTTGC--tttattctcgtatttatttacctccatatctccaaataatctgctcatttcaccttttcttgatttataaaattgaaatactatTAGCTTCAGGCAATTAAATATTAGACTCAAATACACTAACCAGACTTTCAATTCCCAGTTTCTTTAGCAGAGGGCCCTCCTGGTTCCCCTTTCTCCCAAAGCCCCCTTCCCCCCAAAGCCCCCTTCCCCCAAAACCTCCTGGCTCCAT-GGCAGGGCTGGGTGCGGGGAGCTGCGGGT------GGGGTCAGAGGCAGCTGCCACAGCTCCTCCCCGGATTTCACCGCCTG---GCGGCTTTCACCCCCACCCCTGCAGCCTCGGGGATCATCAGGCACACCAGGGAGCCCTCCCCTCCTCTG-AGGCCCTGCACATGCACTGGGAGCTGTAGCTGTCCGCTCTTTTTCCTCCAACAATGCCTGTGATCTATTTTCCAGCTTCCAAAAATAAATTGAAATTTCCCCATCAACTGTTAACGTCCCTTCCCACTCTTTTCACTCTCAGGGA-TATTTTCCTACAGATTTATTTTTTCATGCATTCCCCACTGCCCTGAGTCATTTTGGTAACTGAGTCCAGGTCAGCCAAGCAGTGTTTAGGACACTGTTTCCTAAGCATTGGCTGTGGTGACCTAGTGGCACCAAGAATTCCCTCAGAAACTTAATAACGATGCAAACCCCCAAGTGTCCTCTTTAGTGGGTCTCTCATGGGCTCTGGAAATGGAGCGTTACATCTCTCCTGGGAAACTAAAGCACATCTCACCTTGAGGACCATGGTGTGCACAGTCTCTGCTAGTGGACACTTGGgggctgaatttta-------ccactcccccaaattcctatgttgaagccctaacagccacgacctcagaatgtggctgtattcaaagatgggggtcttta-------------------------------ggccgggcacggtggctcactcctgtaatcccagcactttgggaggatgaggtgggcagatcac--aaggtcaggagatcgagatcatcctggctaacatggtgaaaccctgtctctactaaaaa--atacaaac- i chlSab2.chr12 C 0 C 0 s calJac3.chr1 77134022 1461 + 210400635 GTTTGCCTTTTCACCTAAACTCTGCACTGCAGCAGAACTTCCAGCGCTCATCAGAAGTCTATTCCTGCTTCCCCCAGCGCAGGTGGCTGAGTCTCCTTGCATGCCCCTGGCATGGCCGAGGGCCTGGGTCTGTCCAAGGCCATGGTTTGCACTCCTGCCCTTCTTTCCTGCCCCTTCCTGGGGCTGGGGAAGGCAACCGGCTACATGCTGGTGACAG---CAA--------------CGGGCCTCCAACTGTGGCTTTAGAGGCAAGGCCTACCCCTACTGAAG-CCACAGCCTGACTCTGCGTGGAGGGAAATGAACCTGGTTCTCAGCCCCTGAGTTGCGGGCGCCCTGTTGCTGAAGCCCAGCTCCTGTCAACGGGAGAGGGAGAGGCGCACTTCACCTGCTGCTTGCTTTTTATTCTCATATTTATTTACCTCCATATCTCCAAATAATCTGCTAGTTTCATTCCTTCTTGATTCGTAACACTGAAATACTATTAGCTTCAAGCAACTAAATATTAGACTCAAATACACTAACCAGACTTTCTACTCCCAATTTCCTTAGCAGAGGCCCCTCCAGCTTCCCCTTTCT-----------------CCCAAAGCCCCCTTCCCCCAAAACCTCCTGCCTCCATGGGCAGGGCTGGGTGCAGGGAGCTGCAGGT------GGGGGCAGATGCAGCTGCAGCAGTTTCTCACC-GATTTCACCGCCTCGTGGCTGCTTTCATCTCCACCCCTTCAGTCTTGGGGATCACCAGGTACACCAGG-AGCCGTCCCCTTCTCTGTGGGCCCTACACATGCATCGGGAGCTGTAGCTGTCCGCTATTCTTCCCCCAACAATGCCTGTGATCTATTTCACAGCTTCCAAAAATAAATTAAAATTTCCCCATCAACTGATAATGTCCCTTCCCATTCTTTTCACTCTGAGGGA-TTTTCTCCTACAGACTTATTTTTCCATGCATTCCCCACTGCCTTGAACCATTTTTGTAACTG-GTCCAGGTCAGCCAAGCAGTGTTTAGGATACTGTTTCCTAAGCATTGGCTGTGGTGACCTAGTGGCACCAAGAATTCCCTCAGAAGCTTCATAACGATGC-ACCTCCCAGGTGTCCTCTTAGGTGGGTCTAGAGTGGGCTCTGGAAATGGAGCCTTACATCGCTCCTGGGAGACTAAAGCACGTCTCACCTTGACAACCATGGTGTGCAGAGTCTCTCCTAGTGGACACTTGGGGTCTAAATTTTACTACGCCCCAccccgccggattcctgtgttgaag-cctaatacccaggacctcagaatgtgactgtatttgaagatgcgggtctttaaagagctgattgaattaaaaatgagtcatggggctgggtgcagcggtgcacacctgtaatcctagtattttgggaggccaaggcaggtagatcacctaaggtcaggagtttgagaccagcctggccaacatggtgaaatcttgtctctaccaaaaa--aaaaaaaaa i calJac3.chr1 C 0 C 0 a score=389591.000000 s hg38.chr9_GL383542v1_alt 54129 190 + 60032 aattagcctggagtggtggcgggcgcctgtagtcccagctactcgggaggctgaggcaggaggattgcttgaaccagggaggcagaaggttgcagtgagctgagatcacgccactgcactccagcccgggagacagtgcgagactccgtca---aaaaaaaaaaaaag-------agggggg---gtctttaaagatcccatt s panTro4.chr9 86998807 189 + 137840987 aattagccgggagtggtggcaggcacctgtagtcccagctactcgggaggctgaggcaggaggattacttgaaccagggaggcagaaggttgcggtgagctgagatcacgccactgcactccagcccgggagacagtgcgagactccgtc----aaaaaaaaaaaaag-------aaggggg---gtctttaaagatcccatt i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83629949 191 + 135191526 aattagccgggagtggtggcgggtgcctgtagtcccagctacttgggaggctgaggaaggaggattgcttgaacccgggaggt-ggaggttgcagtgagctgagatttcgccactgcactccagccccggagacagtgcgagactccgtc----aaaaaaaaaaaggg-------gggggggggcgtctttaaagatctcatt i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76136945 191 - 122973662 aaatagctggccatggtggcgggcacctgtagtcccagctagtcgggaggctgaggcaggagaattgcttgaacccgggaggc-ggaggttgcagtgagctgagatcatgccactgtgctccagcctgggagacagtgcgagaccccttc----aaaaaaaaaaaaaa-------aaaggggggggtctttaaagatctcatt i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 97582871 197 + 112192347 aattagccgggcgtggtggccggtgcctatagtcccagctgctcgggagactgaggcaggagaatggtgtgaacctgcgaggc-agaggttgcagtgagctgagatcacaccactgcactccagcccaggagacagtgcgagactccatttg--aaaaaaaaaaaagatgatgatgatgggg---gtctttaaagatctgatt i rheMac3.chr15 C 0 C 0 s macFas5.chr15 98804957 199 + 112612857 aattagccgggcgtggtggccggtgcctatagtcccagctactcgggagactgaggcaggagaatggtgtgaacctgcgaggc-agaggttgcagtgagctgagatcacaccactgcactccagcccaggagacagtgcgagactccatttgaaaaaaaaaaaaaagatgatgatgatgggg---gtctttaaagatctgatt i macFas5.chr15 C 0 C 0 s papAnu2.chr15 94517390 199 + 107442819 aattagccaggcgtggtggccggtgcctatagtcccagctactcgggagactgaggcaggagaatggtgtgaacctgcgaggc-agaggttgcagtgagctgagatcacaccactgcactccagcccgggagacagtgcgagactccatttgaaaaaaaaaaaaaagatgatgatgatgggg---GTCTTTAAAGAtctgatt i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 98729386 197 + 108555830 aattaaccgggcgtggtggccggtgcctatagtcccagctactcgggagactgaggcaggagaatggtgtgaacctgcgaggc-agaggttgcagtgagctgagatcacaccactgcactccagcccgggagacactgtgagattccatttg--aaaaaaaaaaaagatgatgatgatgggg---gtctttaaagatctgatt i chlSab2.chr12 C 0 C 0 e calJac3.chr1 77135483 0 + 210400635 C a score=342097.000000 s hg38.chr9_GL383542v1_alt 54319 144 + 60032 aaatta-------------------aaatgagtcatGg-gacaggcgcagtggctcacacctgtaatcctagtattttgagaagccgaaacaggtagatcatctaaggttaggagttcaagacaagcccggccaacatggcgaaaccctgtctctacca--aaaaa- s panTro4.chr9 86998996 141 + 137840987 aaatta-------------------aaatgagtcatGg-gacaggcgccgtggcgcacacctgtaatcctagtattttgagaagccgaaacgggtagatcatctaaggttaggagttcaagacaagcctggccaacatggcgaaaccctgtctctacc-----aaa- i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83630140 141 + 135191526 aaatta-------------------aaatgagtcatGg-gacaggcgccgtggctcacacctgtaatcctagtattttgagaagccgaaatgggtagatcatctaaggttaggagttcaagacaagcctggccaacatggtgaaaccctgtctctacc-----aaa- i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76137136 165 - 122973662 aaattaaatgagatctcattaaattaaatgagtcatgg-gacaggtgctgtggctcacacctgtaatcctagtactttgagaagccgaggtgggtagatcatctaaggtcaggagttcgagaccagcctggccaacatggcgaaaccctgtctctaccaccaaaaa- i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 97583068 142 + 112192347 aaatta-------------------aaatgagtcatGGCTCCAGGCACC-tagctcacacctgtaatcctggtactttgggaagccgaggtggggagatca-cgaaggtcaggagtttgagaccagcctggccaacatggcaaaaccctgtctctact---aaaaa- i rheMac3.chr15 C 0 I 712 s macFas5.chr15 98805156 142 + 112612857 aaatta-------------------aaatgagtcatggctccaggcacc-tagctcacacctgtaatcctggtactttgggaagccgaggtgggtagatca-cgaaggtcaggagtttgagaccagcctggccaacatggcaaaaccctgtctctact---aaaaa- i macFas5.chr15 C 0 I 1 s papAnu2.chr15 94517589 142 + 107442819 aaatta-------------------aaatgagtcaTGGCTCCAGGCAcc-tagctcacacctgtaatcctggtactttgggaagccgaggtgggtagatca-cgaaggtcaggagttcgagaccagcctggccaacatggtgaaaccctgtctctact---aaaaa- i papAnu2.chr15 C 0 I 1 s chlSab2.chr12 98729583 142 + 108555830 aaatta-------------------aaatgagtcatggctccaggcacc-tagctcacacctgtaatcctggtactttgggaagccgaggtgggtagatca-caaaggtcaggagttcgagaccagcctggccaacatggcgaaaccctgtctctact---aaaaa- i chlSab2.chr12 C 0 I 1 s calJac3.chr1 77135483 141 + 210400635 aaaatt-------------------agctggg-cattg-gctgggtgtggtggctcacacctgtaatcccaacactttgggaggccgaggtggacagatca--caaggtcaggagtttgagaccagcctggtcaatatggtgaaactgtgtcgctact---aaaaaa i calJac3.chr1 C 0 C 0 a score=63405.000000 s hg38.chr9_GL383542v1_alt 54463 35 + 60032 aaaaaaaAAAAAAGTAGCTGGGTGTTggccaggtg s panTro4.chr9 86999137 35 + 137840987 aaaaaaaaaaAAAGTAGCTGAGTGTTggccaggtg i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83630281 35 + 135191526 aaaaaaaaaaaaagtagctgggtgtTggccaggtg i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76137301 35 - 122973662 aaaaaaaaaaaaattacctgggtgttggccaggtg i nomLeu3.chr1a C 0 I 454 s macFas5.chr15 98805299 35 + 112612857 aaaaataaaaaaaacagctgggtgttggccaggtg i macFas5.chr15 I 1 C 0 s papAnu2.chr15 94517732 35 + 107442819 aaaaataaaaaaaacaactgggtgttggccaggtg i papAnu2.chr15 I 1 C 0 s chlSab2.chr12 98729726 35 + 108555830 aaaaataaaaaaaacagctgggtgttggccaggtg i chlSab2.chr12 I 1 C 0 s calJac3.chr1 77135624 19 + 210400635 -----tacaaaaa-----------ttagccaggtg i calJac3.chr1 C 0 C 0 e rheMac3.chr15 97583210 712 + 112192347 I a score=192881.000000 s hg38.chr9_GL383542v1_alt 54498 110 + 60032 cggtggctcgtgcctgtaataccagcactttgggaggccgacacaggcggat--catgaggtcaggagatcgaga-------------------------------ccatcctggctaacacggtgaaaccctatctctacta s panTro4.chr9 86999172 110 + 137840987 cggtggctcgtgcctgtaataccagcactttgggaggccgacacaggcggat--catgaggtcaggagatcgaga-------------------------------ccatcctggctaacatggtgaaaccctgtctctacta i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83630316 110 + 135191526 cggtggcttgcgcctgtaataccagcactttgggaggccgacgcaggcggat--catgaggtcaggagatcaaga-------------------------------ccatcctggctaacatggtgaaaccctgtctctacta i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76137790 110 - 122973662 cagtggctcacgcctgtaatcccagcactgtgggaggctgaggcaggcggat--cacaaggtcaggagatcaaga-------------------------------ccatcctggttaacacggtgaaaccccgtctctacta i nomLeu3.chr1a I 454 C 0 s macFas5.chr15 98805334 110 + 112612857 cggtggctcatgcctgtaatcccagaactttgggaggccaaagcgggcagat--cacaaggccagtagttcaaga-------------------------------ccagccttgccaatatggtgaaaccccatctccacta i macFas5.chr15 C 0 I 158 s papAnu2.chr15 94517767 110 + 107442819 cggtggctcacacctgtaatcccagaactttgggaggccaaagcgggcagat--cacaaggccagtagttcaaga-------------------------------ccagccttgccaatatggtgaaaccccatctccacta i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 98729761 110 + 108555830 cggtggctcacgcctgtaatcccagaactttgggaggccgaagcaggtggat--cacaaggccagtagttcaaga-------------------------------ccagccttgccaatatggtgaaaccccatctccacta i chlSab2.chr12 C 0 I 186 s calJac3.chr1 77135643 143 + 210400635 ttgtagcacatgtctgtagtcccagctacttgggaggttgaggcaggagaattgcttgaacccaggaggcagaggttgaagtgagtcaatatcttgccactatactccagcctggatgacagagtgagactctgtctccaaaa i calJac3.chr1 C 0 C 0 e rheMac3.chr15 97583210 712 + 112192347 I a score=3616.000000 s hg38.chr9_GL383542v1_alt 54608 7 + 60032 --aaaatac s panTro4.chr9 86999282 7 + 137840987 --aaaatac i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83630426 7 + 135191526 --aaaatac i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76137900 7 - 122973662 --aaaatac i nomLeu3.chr1a C 0 C 0 s calJac3.chr1 77135786 7 + 210400635 aaaaaat-- i calJac3.chr1 C 0 I 38 e chlSab2.chr12 98729871 186 + 108555830 I e papAnu2.chr15 94517877 0 + 107442819 C e macFas5.chr15 98805444 158 + 112612857 I e rheMac3.chr15 97583210 712 + 112192347 I a score=37776.000000 s hg38.chr9_GL383542v1_alt 54615 29 + 60032 aaaaaattagccggacatagtggcggttg s panTro4.chr9 86999289 29 + 137840987 aaaaaattagccggacatagtggcggttg i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83630433 29 + 135191526 aaaaaattagccgggcatagtggcggttg i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76137907 29 - 122973662 aaaaagttagccaggcgtggtggcggttg i nomLeu3.chr1a C 0 C 0 s macFas5.chr15 98805602 29 + 112612857 aaaaaattagctggatatggtggtgggca i macFas5.chr15 I 158 C 0 s papAnu2.chr15 94517877 29 + 107442819 caaaaattagccaggcgtggtagtgggca i papAnu2.chr15 C 0 C 0 s calJac3.chr1 77135831 29 + 210400635 aagaaaatagctaggtgtggtggtgggta i calJac3.chr1 I 38 C 0 e chlSab2.chr12 98729871 186 + 108555830 I e rheMac3.chr15 97583210 712 + 112192347 I a score=274568.000000 s hg38.chr9_GL383542v1_alt 54644 134 + 60032 cctgtagtcccagctacttgggaggctgaggcaggagaatggcgtgaacct--gggaggcagagcttgcagtgagctgagatcatgccactgcactctagcctgggtgacagagcgaggctctgtctcaag---aaaaa s panTro4.chr9 86999318 134 + 137840987 cctgtagtcccagctacttgggaggctgaggcaggagaatggcgtgaacct--gggaggcggagcttgcagtgagctgagatcatgccactgcactctagcctgggtgacagagcgaggctctgtctcaag---aaaaa i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83630462 134 + 135191526 cctgtagtcccagctacttgggaggctgaggcaggagaatggagtgaacct--gggaggcggagcttgcagtgagctgagatcgtgccactgcactctagcctgggtgacagagcaaggttctgtctcaag---aaaaa i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76137936 137 - 122973662 cctgtagtcccagctacttgggaggctgaggcaggagaatggcgtgaacct--gggaggcggagcttgcagtgagctgaggttgcgccactgcactccagcctgggagacagagcaatactccgtctcaagaaaaaaaa i nomLeu3.chr1a C 0 C 0 s macFas5.chr15 98805631 134 + 112612857 cctgtaatcccagctacttgggaggctgaggcagaaggatccctcgaaccc--gggggacagaggttgcagtgagctgagatcacgccacttcactccagcctgggcaacagagcaagattctgtctcaaa---aaaaa i macFas5.chr15 C 0 C 0 s papAnu2.chr15 94517906 130 + 107442819 tctgtagttccagctacttgggaggctgaggcaggagactcatttgaactt--gggaggcagaggtttcagtgagctgagatggtgccactgcact----cctgggtgacagagtgagatgcagtttcaaa---aaaaa i papAnu2.chr15 C 0 I 754 s chlSab2.chr12 98730057 134 + 108555830 cctgtaatcccagctacttgggaggctgaggcaggaggatccctcgaaccc--gggggacagaggttgcagtgagctgagatcacaccactttactctagcctgggtgacagagcaagattctgtctcaaa---aaaaa i chlSab2.chr12 I 186 C 0 s calJac3.chr1 77135860 136 + 210400635 cctgtaatcccagctacttgggaggctgaggcaggagactagcttgaaccccaggggggaagaggttgcagtgagctgatatcataccacttcactccagcctgggtgacagagtaaaactctgtctcaaa---aaaaa i calJac3.chr1 C 0 C 0 e rheMac3.chr15 97583210 712 + 112192347 I a score=11322.000000 s hg38.chr9_GL383542v1_alt 54778 42 + 60032 aaaaagaaagaaaaagaaaCCAACAACAACAACAAAAAATAA s panTro4.chr9 86999452 42 + 137840987 aaaaagaaagaaaaagaaaCCAACAACAACAACAAAAAATAA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83630596 42 + 135191526 aaaaagaaagaaaaagaaaCCAACAACAACAAATAATAATAA i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76138073 38 - 122973662 aaaaagaaagaaaaagaaaccaacaa----aacaaaaaataa i nomLeu3.chr1a C 0 C 0 s macFas5.chr15 98805765 17 + 112612857 ---aaaaaaaaaaaaaaaat---------------------- i macFas5.chr15 C 0 C 0 s chlSab2.chr12 98730191 14 + 108555830 ------aaaaaaaaaaaaat---------------------- i chlSab2.chr12 C 0 C 0 s calJac3.chr1 77135996 5 + 210400635 ---------------aaaat---------------------- i calJac3.chr1 C 0 C 0 e papAnu2.chr15 94518036 754 + 107442819 I e rheMac3.chr15 97583210 712 + 112192347 I a score=654401.000000 s hg38.chr9_GL383542v1_alt 54820 279 + 60032 taaaataagtcgtatggctggggcctaatctaacatgactggtgtccttataagaggcaa---ttaggacacagacacacacagaggaaaggccatgtgaggacacagggagaagaaggctgtctacaagccgaggagagaggcctcaggaaaaaacaaccatgtgcacaccttgatctcagacctccagcctccaagacttaaaaaggtaaatgtctgttgttgaagtccccagatctgggatatgttgttacagcagctctaacaaactaatacGACACT s panTro4.chr9 86999494 279 + 137840987 taaaataagtcatatggctggggcctaatctaacatgactggtgtccttataagaggcaa---ttaggacacagacacacacagaggaaaggccatgtgaggatacagggagaagaaggctgtctacaagctgaggagagaggcctcaggaaaaaacaaccatgtgcacaccttgatctcagacctccagcctccaagacttaaaaaggtaaatgtctgttgttgaagtccccaggtctgggatatgttgttacagcagctctaacaaactaataTGACACT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83630638 279 + 135191526 taagatgagtcatatggctggggcctaatctaacacgactggtgtccttataagaggcaa---ttaggacacagacacacacagaggaaaggccatgtgaggacacagggagaagagggctgtctgcaagccaaggagagaggcctcaggaaaaaacaaccctgtgcacaccttgatctcagacctccagcctccaagacttaaaaaggtaaatgtctgttgttgaagtccccaggtctgggatattttgttacagcagctctaacaaactaatacCACACT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76138111 279 - 122973662 taaaatgagtcatatggctggggcctaatctaacatgactggtgtccttataagaggcaa---ttaggacacagacacacacagaggaaaggccatgtgaggacacagggagaagagggctgtctgcaagccaaggagagaggcctcaggaaaaaacaaccctgtgtacaccttgatctcagacctctagcctccaagacttaaaaaggtaaatgtctgttgttgaagtccccaggtctgggatattttgttacagcagctctaacaaactaataGGACACT i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 97583922 276 + 112192347 taaaatgagtcatatggatggggcctaatctaacatgactggtgtccttataagaggcag---ttaggacccagacacacacacaggaaaggccatgtgaggacacaagaagaagagggctacctgcaagccaaggagagaggcctcaggaaaaaacaaccctgtgcacacctggatctcagacctccagcctccaagacttaagaaggtaaatgtc---tgttgaagtccccaggtctggggtgttttgttacagcagctctaacaaactaatacGACACT i rheMac3.chr15 I 712 C 0 s macFas5.chr15 98805782 276 + 112612857 taaaatgagtcgtatggatggggcctaatctaacatgactggtgtccttacaagaggcag---ttaggacccagacacacacacaggaaaggccatgtgaggacacaagaagaagagggctacctgcaagccaaggagagaggcctcaggaaaaaacaaccctgtgcacaccttgatctcagacctccagcctccaagacttaagaaggtaaatgtc---tgttgaagtccccaggtctggggtgttttgttacagcagctctaacaaactaatacGACACT i macFas5.chr15 C 0 C 0 s chlSab2.chr12 98730205 276 + 108555830 taaaatgagtcatatggatggggcctaatctaacatgactggtgtccttataagaggcaa---ttaggacccagacacacacacaggaaaggccatgtgaggacacaaggagaagagggctacctgcaagccaaggagagaggcctcagaaaaaaacaaccctgtgcacaccttgatctcagacctccagcctccaagacttaagaaggtaaatgtc---tgttgaagtccccaggtctggggtgttttgttacagcagctctaacaaactaataTGACACT i chlSab2.chr12 C 0 C 0 s calJac3.chr1 77136001 279 + 210400635 taaaatgagtcatgtggatggggcataatctaacatgactggtgtccttataagacgcaattcttaggacatggacatacacagaggaaaagccacgtgaggacacagggagaagagggctatctgcaagccaaggagagaggcctcaggagaa---aaccctgtgtgcaccttaatctcagacctccagcctccaagacttaagaaggtaaatgtccgttgtttaagtccccaggtctggggtgttttgttacagcagctctagcaaactaatacaACAAT i calJac3.chr1 C 0 C 0 e papAnu2.chr15 94518036 754 + 107442819 I a score=240650.000000 s hg38.chr9_GL383542v1_alt 55099 97 + 60032 CCAATCAAGTGTTCTTAACAGCATGCTCAGAACTGCTGGGCTGGGGCCTTGGCTCTGAGATATTTAAGCCTCAGGTGGGGAGACCAGCCTTCCAGAT s panTro4.chr9 86999773 97 + 137840987 CCAATCAAGTGTTCTTAACAGCATGCCCAGAACTGCTGGGCTGGGGCCTTGGCTCTGAGATATTTAAGCCTCAGGTGGGGAGACCAGCCTTCCAGAT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83630917 97 + 135191526 CCAATCAAGTGTTCTTAACAGCATGCCCAGAACTGCTAGGCTGGGGCCTTGGCTCTGAGATATTTAAGCCTCAGATGGGGAGACCAGCCTTCCAGAT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76138390 63 - 122973662 CCAATCTAGTGTTCTCAACAGCACTCCCAGAACTGCCGGGC----------------------------------TGGGGAGACCAGCCTTCCAGAT i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 97584198 96 + 112192347 CCAATCAAGTATTCTTTACAGCACACCTAGAACTGCCGGGCTGAGGCCTT-GCCCTGAGATTTTTAAGCCTCGGATGGGGAGACCAGTCTTCCAGAT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 98806058 96 + 112612857 CCAATCAAGTATTCTTTACAGCACGCCCAGAACTGCCGGGCTGAGGCCTT-GCCCCGAGATTTTTAAGCCTCGGATGGGGAGACCAGTCTTCCAGAT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 94518790 96 + 107442819 ccaatcgAGTA-TCTTTACAGCACGCCCAGAACTGCCAGGCTGGGGCCTTGGACCTGAGATATTTAAGCCTCGGATGGAGAGACCAGTCTTCCAGAT i papAnu2.chr15 I 754 C 0 s chlSab2.chr12 98730481 96 + 108555830 CCAATCGAGTATTCTTTACAGCACGCCCAAAACTGCCGGGCTGAGGCCTT-GCCCCGAGATTTTTAAGCCTCGGATGGGGAGACCAGTCTTCCAGAT i chlSab2.chr12 C 0 C 0 s calJac3.chr1 77136280 97 + 210400635 CCAATCAAGTGTTCTTTACAGCACGCCCAGCACTGCAGGGCTGGGGCCTTGGCCCTGAGATATTTAAGCCTCAGATGGGGAGACCAGCCTTCCAGAT i calJac3.chr1 C 0 I 358 a score=1382060.000000 s hg38.chr9_GL383542v1_alt 55196 472 + 60032 AAGAGTGATTTTTAAAGCTAGCAAAGCCCCAGCTATACAGTGCTTACCTTTGCTTATATCACAGTTACAGAGTTTTTGCGTCAGTAACACTTGAAAACTCCTTGAAAGCATTTGTTATTCATAGGTAAAGTAGATGGTCTACAAATGAATGTGGTTAATAATTTTAACCTTGAGATATGATCTATTCTGAATTAGAATCATATTCTGAATTAGAAGCTTTACTAGATTTCTACTTTGCAAGGGGATTTTGCTGTGGAGTGTTTTGCAGATTCCCACTCACCTTAGCAATTTAATTCCACAAATGGATGTCGAGCTCCACCAGCTTTTTAATCACCCCACTTAGTAATGAAGTGAGTTAAATGAATTTATATCATCCCAGCCACTTGACATGCAATCATCAGACAGCCCAACAGTGCC-AGGGGCCTGGTGGAAGAGCAGTGAGAATTACAGGAGCTTCAATCAGAAGAAGGCT s panTro4.chr9 86999870 442 + 137840987 AAGAGTGATTTTTAAAGCTAGCAAAGCCCCAGCTATACAGTGCTTACCTTTGCTTATATCACAGTTACAGAGTTTTTGCGTCAGTAACACTTGAAAACTCCTTGAAAGCATTTGTTATTCATAGGTGAAGTAGATGGTCTACAAATGAATGTGGTTAAT------------------------------AATTAGAATCATATTCTGAACTAGAAGCTTTACTAGATTTCTACTTTGCAAGGGGATTTTGCTGTGGAGTGTTTTGCAGATTCCCACTCACCTTAGCAATTTAATTCCACAAATGGATGTCGAGCTCCACCAGCTTTTTAATCACCCCACTTAGTAATGAAGTGAGTTAAATGAATTTATATCATCCCAGCCACTTGACATGCAATCATCAGACAGACCAACAGTGCC-AGGGGCCTGGTGGAAGAGCAGTGAGAATTACAGGAGCTTCAATCAGAAGAAGGCT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83631014 454 + 135191526 AAGAGTGATTTTTAAAGTTAGCAAAGCCCCAGCTATACAGTGCTTGCCTTTGCTTATATCACAGTTACAGAGTTTTTGCGTCAATGACACTTGAAAACTCCTTGAAAGCATTTGTTATTCATAGGTAAAGTAGATGGTCTACAAATGAACGCAGTTAATAATTTTAACCTTGAGATA------------------GATCATATTCTGAATTAGAAGCTTTACTAGATTTCTACTTTGCAAGGGGATTTTGCTATGGAGTGTTTTGTAGATTCCCACTCACCTTAGCAATTTAATTCCACAAATGGATGTCGAGCTCCACCAGCTTTTTAATCATCCCACTCAGTAATGAAGTGAGTTAAATGAATTTATATCATGCCAGCCACTTGACATGCAATCATCAGACAGACCAACAGTGCC-AGGGGCCTGGTGGAAGAGCAGTGAGAATTACAGGAGCTTCAATCAGAAGAAGGCT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76138453 454 - 122973662 AAGAGTGATTTTTAAAGCTAGCAAAGCCCCAGCTATACAGTGCTTGCCTTTGCTTATATCATAGTTGCAGAGTTTTTGCATCAATGACGCTTGAAAACTCCCTGAAAGCATTTGTTATTCATAGGTAAAGTGGATGGTCTACAAACGAATGTGGTTAATAATTTTAACCTTGAGATA------------------GATCATATTCTGAATTAGAAGCTTTACTAGATTTCTACTTTGCAAGGGGATTTTGCTATGGAGTGTTTTGCATATTCCCACTCACCTTAGCAATTTAATTCCACAAACAGATGTTGAGCTCCACCAGCTTTTTAATCACCCCACTTAGTAATGAAGTGAGTTAAATGAATTTATATCATCCCAGCCACTTGACATGCAATCATCAGACAGACCAACAGTGCC-AAGGGCCCAGTGGAAGAGCAGTGAGAATTACAGGAGCTTCAATCAGAAGAAGGCT i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 97584294 454 + 112192347 AAGAGTGATTTTTAAAGCTAGCAAAGCCCCAGCTATACAGTGCTTGCCTTTGCTTATATCACAGTTACAGAGTTTTTGCATCAATGACACTTGAAAACTCCTTGAAAACATTTGTTATTCATAGGCAAAGTAGATAGTCTACAAATGAATGTGGTTACTTATTTTAATCTTGAGATA------------------GATCATATTCTGAATTAGAAGCTTTGCTAGATTTCTACTTTGCAAGGGGATTTTGCTATGGAGTGTTTTGCAGATTCCCACTCACCTTAGCAATTTAATTCCACAAATGGATGTCGAACTCCACCAGCTTTTTAATCACCCCACTTAGTAATGAAGTGAGTTAAATGAATTTATATCATCCCAGGCACTTGACATGCAATCATCAGATAGACCAACAGTGCC-AGGGGCCTGGTGGAAGAGCAGCGAGAATTACAGGAGCTTCAATCAGAAGAAGACT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 98806154 454 + 112612857 AAGAGTGATTTTTAAAGCTAGCAAAGCCCCAGCTATACAGTGCTTGCCTTTGCTTATATCACAGTTACAGAGTTTTTGCATCAATGACACTTGAAAACTCCTTGAAAACATTTGTTATTCATAGGCAAAGTAGATAGTCTACAAATGAATGTGGTTACTTATTTTAATCTTGAGATA------------------GATCATATTCTGAATTAGAAGCTTTGCTAGATTTCTACTTTGCAAGGGGATTTTGCTATGGAGTGTTTTGCAGATTCCCACTCACCTTAGCAATTTAATTCCACAAATGGATGTCGAACTCCACCAGCTTTTTAATCACCCCACTTAGTAATGAAGTGAGTTAAATGAATTTATATCATCCCAGGCACTTGACATGCAATCATCAGATAGACCAACAGTGCC-AGGGGCCTGGTGGAAGAGCAGCGAGAATTACAGGAGCTTCAATCAGAAGAAGACT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 94518886 454 + 107442819 AAGAGTGACTTTTAAAGCTAGCGAAGCCCCAGCTATACGGTGCTTGCCTTTGCTTATATCACAGTTACAGAGTTTTTGCATCAATGACACTTGAAAACTCCTTGAAAACATTTGTTATTCATAGGCAAAGTAGATAGTCTATAAATGAATGtggttaattattttaatcttaagATA------------------GATCATATTCTGAATTAGAAGCTTTGCTAGATTTCTACTTTGCAAGGGGATTTTGCTATGGAGTGTTTTGCAGATTCCCACTCACCTTAGCAATTTAATTCCACAAATGGATGTCGAACTCCACCAGCTTTTTAATCACCCCACTTAGTAATGAAGTGAGTTAAATGAATTTATATCATCCCAGGTACTTGACAGGCAATCATCAGACAGACCAACAGTGCC-AGGGGCCTGGTGGAAGAGCAGTGAGAATTACAGGAGCTTCAATCAGAGGAAGACT i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 98730577 447 + 108555830 AAGAGTGATTTTTAAAGCTAGCAAAGCCCCAGCTATACAGTGCTTGCCTTTGCTTATATCACAGTTACAGAGTTTTTGCATCAATGACACTTGAAAGCTCCTTGAAAACATTTGTTATTCATAGGCAAAGTAGATAGTCTACAAATGAATGTGGTTAATTATTTTAATCTTAAGATA------------------GATCATATTCTGAATTAGAAGCTTTGCTAGATTTCTACTTTGCAAGGGGATTTTGCTATGGAGTGTTTTGCAGATTCCCACTCGCCTTAGCAATTTAATTCCACAAATGGATGTCGAACTCCACCAGCTTTTTAATCACCCCACTTAGTAATGAAGTGAGTTAAATGAATTTATATCATCCCAGGTACTTGACATGCAATCATCAGACAGACCAACAGTGCC-AGGGGCCTGGTGGAA-------GAGAATTACAGGAGCTTCAATCAGAAGAAGGCT i chlSab2.chr12 C 0 C 0 s calJac3.chr1 77136735 454 + 210400635 AAGAGTGATTTTTAAAGCCAGCAAAGCCTCAGCTATACAGTGCTTGTCTTTGATTATATTACAGTTACAGAGTTTTTGCACCAATGACACTTGAAAACTCCTTAAAAGCTTTTGTTATTCATAGGCAAAGTAGATGGTCTACAAATGAATGTGGTTAATTATTTTAATCTTGAGATA------------------GATCATATTCTGAATTAGAAGCTTTACTAGATTTCTACTTTGCAAGGTGATTTTGCTATGGGCTGCTTTGCAGATTCCCACTCACCTTAGCAATTTAATTCCATGAACCGATGTTGAGCTCCAGCAGC-TTCTAATCACTCCACTTAGTACTGAAGTGAGTTAAATGAATTTATAGCATCCCGGCCACCTGACATGCAATCATCAGACAGACTAACAGTGCCGGGGGGCCTGGTGGAAGAGCAGTGAGAATTGCAGGAGCTTCAATCAGAAGAAGGCT i calJac3.chr1 I 358 I 1352 a score=98004.000000 s hg38.chr9_GL383542v1_alt 55668 40 + 60032 TTGTGCAAAGGCTGCACAACCAAGACAGAGACAGAGACAG s panTro4.chr9 87000312 40 + 137840987 TTGTGCAAAGGCTGCACGACCAAGACAGAGACAGAGACAG i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83631468 40 + 135191526 TTGCGAAAAGCCTGCACGACCAAGACAGAGACAGAGACAG i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76138907 40 - 122973662 TTGCACAAAGGCTGCACGACCAAAACAGAGACAGAGACAG i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 97584748 40 + 112192347 TTGCACAAAGGCTGCACGACCAagacagagacagagacag i rheMac3.chr15 C 0 I 8 s macFas5.chr15 98806608 40 + 112612857 TTGCACAAAGGCTGCACGACCAAGACAGAGACAGAGACAG i macFas5.chr15 C 0 C 0 s papAnu2.chr15 94519340 40 + 107442819 TTGCACAAAGGCTGCATGAccaagacagagacagagacag i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 98731024 40 + 108555830 TTGCACAAAGGCTGCACGACCAAGACAGAGACAGAGACAG i chlSab2.chr12 C 0 C 0 e calJac3.chr1 77137189 1352 + 210400635 I a score=22059.000000 s hg38.chr9_GL383542v1_alt 55708 12 + 60032 GAAGGAAGGGGC s panTro4.chr9 87000352 12 + 137840987 GAAGGAAGGGGC i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83631508 12 + 135191526 GAAGGAAGGAGC i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76138947 12 - 122973662 GAAGGAAGGGGC i nomLeu3.chr1a C 0 C 0 s macFas5.chr15 98806648 12 + 112612857 GAAGAAAGGGGC i macFas5.chr15 C 0 C 0 s papAnu2.chr15 94519380 12 + 107442819 gaagaaaggggC i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 98731064 12 + 108555830 GAAGAAAGGGGC i chlSab2.chr12 C 0 C 0 e calJac3.chr1 77137189 1352 + 210400635 I e rheMac3.chr15 97584788 8 + 112192347 I a score=2070983.000000 s hg38.chr9_GL383542v1_alt 55720 842 + 60032 AACGAGACTAGCCTCCAGCAGAGACATCAGAGACATGGGACTGCTGGATCATGTGTAC-AGCACGTGTCATGGATGGGACCCATGAGGCAGGACTAAGGATTGCCTAGAAGCGAGTGAGCCCAaggacagcaaacgatgagggcagggagcagagaggagagggaggcatggagaggTCCTCACTTCTTCCTCTACCCTGTCTTGACTGCAGGTGTCTTGAGGGCAGAAGCACCCCCAATGCTTCCTTCACCTTCCTGCAGCAAAAGGCAGCATGGATTGGGTGCTGAGCACAATGTTGGGTTCCACA-----CTGCTCAATAAAGACAAGCTCTTTATCTGATCACTAGCCTGTGTGCATGATAAACACATGCTGACTTCAAGGAAGGTCAGTAGGTTGAAAAATGCATTGATGGGATGAATATAAGTTCTGTCTCTAGTGGGAACAGCTTCGCCTTCACTGTGCTGATGGCACACTTTTGGAGAAGTGCCAGTCACATGTTCTAAACCTCTGGCCAAATAGGTATTTTGGTAAACTAGGCCAAATACCCCATGGCCCTGGCCACAGTGGCTGGTCTAAGGCAGGGCAGCAAGGAACCCAAGTCATTGGGACCTTACAATGTGGCACTGGAGAGAAAGGCCGTGGCCCCTCCTGTCTCATTCAGAAAGAGATGATGCTAGATCTGCCACAGCCACATTCCCACCACCGTCTGCAGTTAGGAAATGAAACCAAAAAGAGACCAGCGGAGAAGGGAGGGAGCATCCTGGATACCCCACACTGCTGGGTCTATCAGCCTGAACTGTGTCCACCCCACACTTACCAGCTTGTGTGAGCAAGTGAATTCCCT s panTro4.chr9 87000364 842 + 137840987 AACGAGACTAGCCCCCAGCAGAGACATCAGAGACATGGGACTGCTGGATCATGTGTAC-AGCACGTGTCATGGATGGGACCCATGAGGCATGACTAAGGATTGCCTAGAAGTGAGTGAGCCCAAGGACAGCAAATGATGAGGGCAGGGAGCAGAGAGGAGAGGGAGGCATGGAGAGGTCCTCACTTCTTCCTCTACCCTGTCTTGACTGCAGGTGTCTTGAGGGCAGAAGCACCCCCAATGCTTCCTTCACCTCCCTGCAGCAAAAGGCAGCATGGATTGGGTGCTGAGCACAATGTTGGGTTGCATA-----CTGCTCAATAAAGACAAGCTCTTTATCTGATCACTAGCCTGTGTGCCTGATAAACACATGCTGACTTCAAGGAAGGTCAGTAGGTTGAAAAATGCATTGATGGAATGAATATAAGTTCTCTCTCTAGTGGGAACAGCTTCGCCTTCACTGTGCTGATGGCACGCTTTTGGAGAAGTGCCAGTCACATGTTCTAAACCTCTGGCCAAATAGGTATTTTGGTAAACTAGGCCAAATACCccattgccctggccacagtggctggtctaaggcagggcagtaaggaacccgagtcattgggaccttacaatgtggcactggagagaaaggccatggcccctcctgtctcattcagaaagagatgatgctagatctgccacagccacattcccaccaccgtctgcagttaggaaatgaaaccaaaaagagaccagcggagaagggagggagcatcctggataccccacactgctgggtctatcagcctgaactgtgtccaccccacacttaccagcttgtgtgagcaagtgaatttcct i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83631520 845 + 135191526 AACGAGACTAGCCCCCAGCAGAGGCATCAGAGACATGGGACTGCTGGATCATGTGTAC-AGCACGTGTCATGGATGGGACCCATGAGGCATGACCAAGGATTGCCTAGAAGCGAGTGAGCCCAAGGACAGCAAACGATGAGGGCAGGGAGC--AGAGGAGAGGGAGGCATGGAAAGGTCCTCACTTCTTCGTCTACCCTGTCTTGACTGCAGGTGTCTTGAGGGCAGAAGCACCCCCAATGCTTCCTTCACCTTCCTGCAGCAAAAGGCAGCATGGATTGGGTGCTGAGCACAATGTTGGGTTCCATACTGTTCTGCTCAATAAAGACAAGCTCTTTATCTGATCACTAGCCTGTGTGCATGATAAACACATGCTGACTTCAAGGAAGGTCAGTAGGTTGAAAAATGCATTGATGGAATGAATATAAGTTCTCTCTCTAGTGGGAACAGCTTCGCCTTCACTGTGCTGATGGCATGCTTTTGGAGAAGTGCCAGTCACATGTTCTAAACCTCTGGCCAAATAGGTATTTTGGTAAACTAGGCCAAATACCCCATGGCCCTGGCCACAGTGGCTGGTCTAAGGCAGGGCAGTAAGGAACCTGAGTCATTGGGACCTTACAATATGGCACTGGAGAGAAAGCCCATGGCCCCTCCTGTCTCATTCAGAAAGAGATGATGCTAGATCTGCCGCAGCCACATTCCCACCACCGTCTGCAGTTAGGAAATGAAACCAAAAAGAGACCAGCAGAGAAGGGAGGGAGCATCCTGGATACCCCACACTACTGGGTCTATCAGCCAGAACTGCGTCTACCCCACACTTACCAGTTTGTGTGAGCAAGTGAATTTTCT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76138959 840 - 122973662 AACGAGACTAGACCCCAGCAGAGGCATCAAAGACATGGGACTGCTGGATCATGTGTAC-AGCACGTGTCATGGATGGGACCCAGGAGGCATGACTAAGGATTGCCTAGAAGCGAGTGAGCCCAAGGACAGCAAATGATGAGGGCAGGGAGCAGAGAGGAGAGGGAGGCATGGAGAGGTCCTCACTCCTGCCTCTACTCTGTCTTGACTGCAGGTGTCTTGAGGGCAGAAGCACCCCCAATGCTTCCTTCACCTTCCCGCAGCAAAAGGCAGCATGGATTGGGTGCTGAGCACAATGTTGGGTTCCATA-----CTGCTCAATAAAGACAAGCTCTTTAGCTGATCACTAGCCTGTGTGCATGATAAACACATGCTGACTTCAAGGAAGGTCAGTAGGCTGAAAAATGCATTGAAGGAATTAATATAAGTTCTCTCTCTAGTGGGAACAGCTTCGCCTTCACTGTGCTGATGGCATGCTTTTGGAGAAGTGCCAGTCACATGTTCTAAACCTCTGGCCAAATTGGTATTTTGGTAAACTAGACCAAATACCCCATGGCCCTGGCCACAGTGGCTGGTCTAAGGCAGGGCAGTAAGGAACCTGAGTCATTGGGACCTTACAATGTGGCACTGGAGAGAAAGGCCATGGCCCCTCCTGTCTCATTCAGAAAGAGATGATGCTAGATCTGCCGCAGCCACATTCCCACCACCGTCTGCAGTTAGGAAATGAAACC--AAAGAGACCAGCGGAGAAGGGAGGGAGCATCCTGGATACCCCACACCACCAAGTCTATCAGCCTGAACTGCGTCTACCCCACACTTCCCAGCTCGTGTGAGCAAGTGAATTCCCT i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 97584796 841 + 112192347 AACGAGACCAGCCCCCAGCAGAGGCATCAGAGACACGGGACTGCTGGATCACGTGTGCAAGCACGTGTCATGGATGGGACCCATGAGGCATGACTAAGGATTGCCTAGAGGCGAGTGAGCCCAAGAACAGCAAACGGTGAGGACAAGGAGCAGAGAGGAGAGGGAGGCATGGAGA-GTCCTCACTCCTGCCTCTACCCTGTCTTAACTGCAGGTGTCTTGAGGGCAGAAGCACCCCCAATGCTTCCTTCACCTTCCCTCAGCAAAAGGCAGCATGGATTGGGTGCTGAGCACAATGTTGGGCTCCATA-----CTGCTCAATAAAGACAAGTTCTTTGTCTGAACACTAGCCTGTGCGCATGATAAACACATGCTGACTTCAAGGAAGGTCAGTGGGTTGAAAAATGCATTGATGGAATGAATGTAAGTTCTCTCTCTAGTGGGAACAGCTTCGCCTTCACTGTGCTGATGGCACGCTTTTGGAGAAGTGCCAGTCACATGTTCTAAATCTCTGGCCAAATTGGTATTTTGGTAACCTAGGCCAAATACCCCATGGCCCTGGCCACAGTGGCTGGCCCAAGGCAGTGCAATAAGGAACCTGAGTCATTGGGACCTTAC-ATGTGGCACTGGAGAGAAAGGCCATGGCCCCTCCTGTCTCATTCAGAACGAGATGATGCTAGATCTGCCACAGCCACATTCCCACCGCCGTCTGCAGTTAGGAaatgaaaccaaaaagataccagcggagaagggagggagcatcctggataccccacgctcctgggtctatcagcctgaactgcgtctaccccacacttcccagcttgtgtgagcaagtgaattccct i rheMac3.chr15 I 8 I 292 s macFas5.chr15 98806660 841 + 112612857 AACGAGACCAGCCCCCAGCAGAGGCATCAGAGACACGGGACTGCTGGATCACGTGTGCAAGCACGTGTCATGGATGGGACCCATGAGGCATGACTAAGGATTGCCTAGAGGCGAGTGAGCCCAAGAACAGCAAACGGTGAGGACAAGGAGCAGAGAGGAGAGGGAGGCATGGAGA-GTCCTCACTCCTGCCTCTACCCTGTCTTAACTGCAGGTGTCTTGAGGGCAGAAGCACCCCCAATGCTTCCTTCACCTTCCCTCAGCAAAAGGCAGCATGGATTGGGTGCTGAGCACAATGTTGGGCTCCATA-----CTGCTCAATAAAGACAAGTTCTTTGTCTGAACACTAGCCTGTGCGCATGATAAACACATGCTGACTTCAAGGAAGGTCAGTGGGTTGAAAAATGCATTGATGGAATGAATGTAAGTTCTCTCTCTAGTGGGAACAGCTTCGCCTTCACTGTGCTGATGGCACGCTTTTGGAGAAGTGCCAGTCACATGTTCTAAATCTCTGGCCAAATTGGTATTTTGGTAACCTAGGCCAAATACCCCATGGCCCTGGCCACAGTGGCTGGCCCAAGGCAGTGCAATAAGGAACCTGAGTCATTGGGACCTTAC-ATGTGGCACTGGAGAGAAAGGCCATGGCCCCTCCTGTCTCATTCAGAAGGAGATGATGCTAGATCTGCCACAGCCACATTCCCACCACCGTCTGCAGTTAGGAaatgaaaccaaaaagataccagcggagaagggagggagcatcctggataccccacgctcctgggtctatcagcctgaactgcgtctaccccacacttcccagcttgtgtgagcaagtgaattccct i macFas5.chr15 C 0 C 0 s papAnu2.chr15 94519392 841 + 107442819 AACGAGACCAGCCCCCAGCAGAGGCATCAGAGACATGGGACTGCTGGATCACGTGTGCAAGCACGTGTCATGGATGGGACCCATGAGGCATGACTAAGGATTGCCTAGAGGCAAGTGAGCCCAAGAACAGCAAACGGTGAGGACAaggagcagagaggagagggaggcatGGAGA-GTCCTCACTCCTGCCTCTACCCTGTCTTAACTGTAGGTGTCTTGAGGGCAGAAGCACCCCCAATGCTTCCTTCACCTTCCCTCAGCAAAAGGCAGCATGGATTGGGTGCTGAGCACAATGTTGGGCTCCATA-----CTGCTCAATAAAGACAAGTTCTTTGTCTGAACACTAGCCTGTGCGCATGATAAACACATGCTGACTTCAAGGAAGGTCAGTGGGTTGAAAAATGCATTGATGGAATGAATGTAAGTTCTCTCTCTAGTGGGAACAGCTTCGCCTTCACTGTGCTGATGGCACGCTTTTGGAGAAGTGCCAGTCACATGTTCTAAATCTCTGGCCAAATTGGTACTTTGGTAACCTAGGCCAAATACCCCATGGCCCTGGCCACAGTGGCTGGCCCGAGGCAGTACAATAAGGAACCTGAGTCATTGGGACCTTAC-ATGTGGCACTGGAGAGAAAGGCCATGGCCCCTCCTGTCTCATTCAGAAGGAGATGATGCTAGATCTGCCACAGCCACATTCCCACCACCGTCTGCAGTTAGgaaatgaaaccaaaaagagaCCAGCGGAGAAGGGAGGGAGCATCCTGGATACCCCACACTCCTGGGTCTATCAGCCTGAACTGCGTCTACCCCACACTTCCCAGCTTGTGGGAGCAAGTGAATTCCCT i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 98731076 842 + 108555830 AACGAGACCAGCCCCCAGCAGAGGCATCAGAGACGTGGGACTGCTGGATCACGTGTGCAAGCACGTGTCATGGATGGGACCCATGAGGCATGACTAAGGATTGCCTAGAGGCAAGTGAGCCCAAGAACAGCAAATGGTGAGGACAAGGAGCAGAGAGGAGAGGGAGGCATGGAGA-GTCCTCACTCCTGCCTCTACCCTGTCTTAACTGCAGGTGTCTTGAGGGCAGAAGCACCCCCAATGCTTCCTTCACCTTCCCGCAGCAAAAGGCAGCATGGATTGAGTGCTGAGCACAATGTTGGGCTCCATA-----CTGCTCAATAAAGACAAGTTCTTTGTCTGAACACTAGCCTGTGTGCATGATAAACACATGCTGACTTCAAGGAAGGTCAGTGGGTTGAAAAATGCGTTGATGGAATGAAGGTAAGTTCTCTCTCTAGTGGGAACAGCTTCGCCTTCACTGTGCTGATGGCACGCTTTTGGAGAAGTGCCAGTCACATGTTCTAAATCTCTGGCCAAATTGGTATTTTGGTAACCTAGGCCAAATACCCCATGGCCCTGGCCACAGTGGCTGGCCCAAGGCAGTGCAATAAGGAACTTGAGTCATCGAGACCTTACAATGTGGCACTGGAGAGAAAGGTCATGGCCCCTCCTGTCTCATTCAGAAGGAGATGATGCTAGATCTGCCACAGCCACATTCCCACCACCGTCTGCAGTTAGGAaatgaaaccaaaaagagaccagcggagaagggagggagcatcctggataccccacgctcctgggtctatcagcctgaacggcgtctaccccacacttcccagcttgtgtgagcaagtgaattccct i chlSab2.chr12 C 0 C 0 e calJac3.chr1 77137189 1352 + 210400635 I a score=3274977.000000 s hg38.chr9_GL383542v1_alt 56562 1412 + 60032 CTTAGGTTTAAGCTGATTTGAGGTTTCACTCACACAGGATATGAGGCCTGGGGTGGGCTGTGGCACCTGACAGACCTTACAATACAGAAGAGACTGGATCAAGACAGGAGAAGGCTGGGCTCTCCCTACGTTAACCGCCCTCACAGAGAGGAGTAAAGCTGCTGGGAAACCCTCGCCTTTCGCCAACAGGGATTGAACCACATCCCTGCTGAACTTCATCCAGAGAGCAGTGGAAAACGCCAGAATATGAGGTGGTGCATCAGCCTTCTCCCGCCTTCAACTATGAGACAAGCCTCCCTTCAAACAGGCAGAAACAGGATGGAATTCAGTTTGTTTT-AAAAAACAAAACCAAAAATAAACCAGAGAGAAGAGCTTTTCTGACTGAGACCAGAGAACCAATACAGATAGGTCAGGTAATCACGCCCTTTTTCTGATTATAAAAGGCAAATTCCCTGCCGCAACCTGGAGTCAGTGTGAGCAAGTAACAAGGTATCTAGGATTGCTTAGGGGCTGCAGAGAACCTATAGGTCAGAGTGACTCAACATTGAAAAgagttaggccaatagaggagcttgcaggagctcagcaggtgggaggagagtgacaacacagtttcatgtcctgggccattcttctgccaaagtggtactcagctcccattgggtggctaccacccacgactacagctttctcCCAAGGACCCACCAGGGCCCAGGGAGGGACCAGCTACTCTCACTCCCCATTCCTAACGCAAGGGCTGCACCACCCCTCGATGGCTTCCCCGCCCCCATGTTCACCTCTGTGAATAATCCCTTTACAGTTTCCGTGCTGCGGTCCCTCCCACTGAGCTCCTCACTGGCACAGGGGCATGTTGGGGACCTTGGGGTCATTttttgccatttagtgtagtcgtgacctagcacttacgtagtgaaatacaaagcattgtattacaagttgtttttatcttccatactctctttttttgttgtttgtttg--tttgtctttgtttttgttttgagacagagtcttgccttgtcacccaggctggagtgaagtggcatgatcttggcccactgcaacctccacctcccaggttcaagcaattctcctgcctcagcctcctgagtagctgggattacaggtgcgtgccaccacattgggctaa--tttttgtagttttacaaaaa------ttagtagagatggggtttcaccatgttggccaggctggtctcgaacccctgacttcaagtgatccgcccacctcagcatcccaaagtgctaggattacaggtgtgagccactgtgcccagcctccatattttcaaac--agaattatattgattattttggaccatgagcatacattggttataaa-atcaatgaatttcattttaagatagtgaatagaatgtttc s panTro4.chr9 87001206 1418 + 137840987 cttaggtttaagctgatttgaggtttcactcacACAGGATATGAGGCCTGGGGTGGGCTGTGGCACCTGACAGACCTTACAATACAGAAGAGACTGGATCAAGACAGGAGAAGGCTGGGCTCTCCCTACGTTAACCGCCCTCACAGAGAGGAGTAAAGCTGCTGGGAAACCCTCGCCTTTCGCCACCAGGGATTGAACCACATCCCTGCTGAGCTTCATCCAGAGAGCAGTGGAAAACGCCAGAATATGAGGTGGTGCATCAGCCTTCTCCCGCCTTCAACTACGAGACAAGCCTCCCTTCAAACAGGCAGAAACAGGATGGAATTCAGTTTGTTTTAAAAAAACAAAACCAAAAATAAACCAGAGAGAAGAGCTTTTCTGACTGAGACCAGAGAACCAATACAGATAGGTCAGGTAATCACGCCCTTTTTCTGATTATAAAAGGCAAATTCCCTGCCACAACCTGGAGTCAGTGTGAGCAAGTAACAAGGTATCTAGGATTGCTTAGGGGCTGCAGAGAACCTATAGGTCAGAGTGACTCAACATTGAAAAgagttaggccaatagaggagcttgcaggagctcagcaggtgggaggagagtgacatcacagtttcatgtcctgggccattcttctgccaaagtggtactcagctcccactgggtggctaccacccacgactacagctttctcCCAGGGCCCCACCAGGGCCCAGGGAGGGA-CAGCTACTCTCACTCCCCATTCCTAACGCAAGGGCTGCACCACCCCTCAATGGCTTCCCCACCCCCATGTTCACCTCTGTGAATAATCCCTTTACAGTTTCCGTGCTGCGGTGCCTCCCACTGAGCTCCTCACTGGCACAGGGGCATGTTGGGGACCTTGGGGTCATTttttgccatttagtatagtcgtgacctagcacttacgtagtgaaatacaaagcattgtattacaagttgtttttttcttccatactctctttttttgttgtttgtttg--tttgtctttgtttttgttttgagacagagtcttgccttgtcgcccaggctggagtgaagtggcatgatcttggcccactgcaacctccacctcccaggttcaagcaattctcctgtctcagcctcctgagtagctgggattacaggtgcgtgccaccacattgggctaa--tttttgtaattttacaaaaattagttttagtagagatggggtttcaccatgttggccaggctggtctcgaacccctgacttcaagtgatccgcccacctcagcatcccaaagtgctaggattacaggtgtgagccactgtgcccagcctgcatattttcaaac--agaattatattgattattttggaccatgagcatacattggttataaa-atcaatgaatttcattttaagatagtgaatagagtgtttc i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83632365 1408 + 135191526 CTTAGGTTTAAGCTGATTTGAGGTTTCACTCACACAGGATATGAGGCCTCAGGTGGGCTGTGGCACCTGACAGACCTTACAGTACAGAAGAGACTGGATCAAGACAGGAGAAGGCTGGGCTCTCCCTACGTTAACCACCCTCAC--AGAGGAGTAAAGCTGCTGGGAAACCCTCGCCTTTTGCCACCAGGGATTGAACCACATCCCTGCTGAGCTTCATCCAGAGAGCAGTGGAAAACGCCAGAATATGAGGTGGTGCATCAGCCTTCTCCCGCCTTCAACTACGAGACAAGCCTCCCTTCAAACAGGCAGAAACAGTATGGAATTCAGTTTGTTTT-AAAAAACAAAACCAAAAATTAACCAGAGAGAAGAGCTTTTCTGACTGAGACCAGAGAACCAATACAGATAGGTCAGGTAATCATGCCCTTTTTCTGATTATAAAAGGCAAATTCCCTGCCGCAACCTGGAGTCAGTGTGAGCAAGTAACAAGGTATCTAGGATTGCTTAGGGGCTGCGGAGAACCTATAGGTCAGAGTGACTCAACATTGAAAAGAGTTAGGCCAATAGAGGAGCTTACAGGAGCTCAGCAGATGGGAGGAGAGTGACATCACAGTTTCATGTCCTGGGCCATTCTTCTGCCAAAGTGGTACTCAGCTGCCATTGGGTGGCTACCACCCACGACTACAGCTTTCTCCCAGGGCCCCACCAGGGTCCAGGGAGGGACCAGCTACTCTCACTCTCCATTCCTAACGCAAGGCCTGCACCACCCGTCAACGGCTTCCCCGCCCCCATGTTCACCTCTGTGAATAATTCCTTTACAGTTTCCATGCTGCAGTGCCTCCCACTGAGCTCCTCACTGGCACAGGGGCATGTTGGGGACCTTGGGGTCA-Tttttgccatttagtgtagttgtgacctagcacttacgtagcgaaatacaaagcattgtattacaa---gtttttttcttccatactctctttttttg----ttgtttg--tttgtctttgtttttgttttgaggcagagtcttgccttgtcgcccaggctggagtgaagtggcatgatcttggcccactgcaacctccacctcccaggttcaagcaattctcctgcctcagcctcctgagtagctgggattacaggtgcgtgccaccacattgggctaa--tttttgtagttttacaaaaattagtgttagtagagatggagtttcaccattttggccaggctggtctcagactcctgacttcaagtgatcctcccacctcagcatcccaaagtgctaggattacaggtgtgagccactgtgcccagcctccatattttcaaac--agaattatactgattattttggaccatgtgcatacattggttataaa-atcaatgaatttcattttaagatagtgaatagagtgtttc i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76139799 1387 - 122973662 CTTAGGTTTAAGCTGATTTGAGGTTTCACTCACACAGGATATGAGACCTGGGGTGGACTGTGGCACCTGACAGAACTTACAATACGGAAGAGACTGGATCAAGACAGGAGAAGGCCGGGATCTCCCTACGTTAACCGCCCTCAC--GGAGGAGTAAAGCTGCTGCGAAACCCTCGCCTTTCGCCACCAGGGATTGAACCACATCGCTGCTGAGCTTCATCCAGAGAGCAGTGGAAAACGCCAGAATATGAGGTTGTGCATCAGCCTTCTCCCGCCTTCAACTATGAGATAAGCCTCCCTTCAAACAGGCAGAAACAGGACGGAATTCAGTTTGTTTT-AAAAAACAAAACCAAAAATAAACCAGAGAGAAGAGCTTTTCTGACTGAGACCAGAGAACCAGTACAGATAGGTCAGGTAATCATGCCCTTTTTCTGATTATAAAAAGCAAATTCCCTGCTGCAACCTGGAATCAGTGTGAGCAAGTAACAAGGTATCTAGGATTGCTTAGGGGCTGCAGAGAACCTATAGGTCAGAGTGACTCAACATTGAAAAgagttaggccaatagaggaacttgcaggagctcagtgggtgggaggagagtgacatcacggtttcatgtcctgggcCA---TTCTACCAAAGTCGTACTCAGCTCCCATTGGGTGGCTACCACCCACGACTACAGCTTTCTCCCAGGGCCCCACCAGGGCCCAGGGAGGGACCAGCTCCTCTCACTACCCATTCCTAACGCAAGGGCTGCACCACCCCTCGATGGCTTCCCCATCCTCATGTTCACCTCTGTGAATAATCCCTTTACAGTTTCCGTGCTGCAGTGCCTCCCACTGAGCTCCTCACTGGCACAGGGGCATGTTGGGGACCTTGGGGTTA-Tttttgccatttagtgtagtcgtgacctagcacttacatagtgaaatacaaagcattgtattacaagttgtttttttcttccatactctctctttt----gtttgtttg--tttgtc--tgtttttgttttgagacagagtcttgccttgtcccccaggccgtagtgaagtggcatgatcttggcccactgcaacctccgcctcccaggttcaagcaattctcctgcctcagcctcctgagtagctgggattacaggtgcgtgccaccacactgggctaa--tttttgtagtt---------------ttagtagagatggggtttcaccatgttggccaggctggtctcaaactcctgacttcaagtgatccgcccacttcagcatcccaaagtgctaggattacaggtgtaagccactgtgcccagcctccatattttcaaac--agaattatattgattattttggaccacgtgcataca----ttataaa-atcaatgaatttcattttaagatagtgaatagagtgtttc i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 97585929 1401 + 112192347 CTTAGGTTTAAGCTGATTTGAGGTTTCACTCCCACAGGATATGAGACCTTGGGTGGGCTGTGGCACGTGACAGACCTTACAATACAGAAGAGACTGGATCAAGACCGGAGAAGGCCGGGCTCTCCCTACGTTAACCGCCCTCAC--GGGGT-GCAAAGCTGCTGGGAAACCCTCACCTTTTGCCACCAGGGATTCAACCACATCCCTGCTGAGCTTCATCCAGAGAGCCGTGGAAAACGCCAGAATATGAGGTGGGGCATCAGCCTTCTCCAGCCTTCAACTACGAGACAAGCCTCCCTTCAAACAGAGAGAAACAGAATGGAATTCAGTTTGTTTT-TAAAATCAAAACCAAAAATAAACCAGAGAGAAGAGCTTTTCTGACTGAGACCAGAGAACCAATACAGATAGTTCAGGTAATCATGCCCTTTTTCTGATTATAAAAGGCAAATTCCCTGCCGCAACCTGGAGTCAGTGTGAGCAAATAACAAGCTACCTAGGATTGCTTAGGGGCTGCAGAGAACCTATAGGTCAGAGTGACTCAACATTGAAAAGAGTTAGGCCAACAGAGGAGCTTGCGGGAGCTCAGCAGGTGGGAGGAGAGTGACATCACATTTTCATGTCCTGGGCAATTCTTCTGCCAAAGTCGTACTCAGCTCCCATTGGGTGGCTACCACCCACGACTATAGCTTTCTCCCAGGGTCCCACCAGGTCCCAGGGAGGGACCAGCTGTCCTCACTCTCCGCTCTTAACGCAAGGGCTGCACCACCCCTCGATGGCTCCCCAGCCCCCGTGTTCACCTCT-TGAATAATCCCTGTACAGTTTCTGGGCTGCGGTGCC-CCCACTGAGCTCCTCACTGGCACAGGGGCATGTTGGGGAACTTGTGGTCA-Tttttgccatttagtgcagttgtgacctggcacttacatagtgaaatacaaatcattgtattacaagttgttttt-tcttccttattttcttttgttt--gtttgtttgactttgtttttgtttttgttttgagacagagtctcgccttattgcccaggctggagtgaagtggcttgatctcggctcagtacaccctccgcctcccaagtccaagcaatcctcctgcctcagcctcccgagtagctgggactacaggcgcccgccacctcgcccggctaatttttttgtattt---------------ttagtagagacggggtttcgccatgttggccaggctggtgtcgaactcctgacttcaagtgatccacccaccttagcgtcccaaagtgctaggattataggtgtaagccactgtgtccagcctccatattttcaaacagagaattatattgattattttggaccatgtgtatacattggttataaagatcaatgaatttcattttaagacagtgaatagagtgtttc i rheMac3.chr15 I 292 C 0 s macFas5.chr15 98807501 1395 + 112612857 cttaggtttaagctgatttgaggtttcactcacACAGGATATGAGACCTTGGGTGGGCTGTGGCACATGACAGACCTTACAATACAGAAGAGACTGGATCAAGACCGGAGAAGGCCGGGCTCTCCCTACGTTAACCGCCCTCAC--GGGGT-GCAAAGCTGCTGGGAAACCCTCACCTTTTGCCACCAGGGATTCAACCACATCCCTGCTGAGCTTCATCCAGAGAGCCGTGGAAAACGCCAGAATATGAGGTGGGGCATCAGCCTTCTCCAGCCTTCAACTACGAGACAAGCCTCCCTTCAAACAGAGAGAAACAGAATGGAATTCAGTTTGTTTT-TAAAAACAAAACCAAAAATAAACCAGAGAGAAGAGCTTTTCTGACTGAGACCAGAGAACCAATACAGATAGTTCAGGTAATCATGCCCTTTTTCTGATTATAAAAGGCAAATTCCCTGCCGCAACCTGGAGTCAGTGTGAGCAAATAACAAGCTACCTAGGATTGCTTAGGGGCTGCAGAGAACCTATAGGTCAGAGTGACTCAACATTGAAAAGAGTTAGGCCAACAGAGGAGCTTGCGGGAGCTCAGCAGGTGGGAGGAGAGTGACATCACATTTTCATGTCCTGGGCAATTCTTCTGCCAAAGTCGTACTCAGCTCCCATTGGGTGGCTACCACCCACGACTATAGCTTTCTCCCAGGGTCCCACCAGGTCCCAGGGAGGGACCAGCTGTCCTCACTCTCCGCTCTTAACGCAAGGGCTGCACCACCCCTCGATGGCTCCCCAGCCCCCGTGTTCACCTCT-TGAATAATCCCTGTACAGTTTCTGGGCTGCGGTGCC-CCCACTGAGCTCCTCACTGGCACAGGGGCATGTTGGGGAACTTGCGGTCA-Tttttgccatttagtgcagttgtgacctggcacttacatagtgaaatacaaatcattgtattacaagttgttttt-tcttccatattttct----ttt--gtttgtttgactttgtttttgtttttgttttgagacagagtctcgccttattgcccaggctggagtgaagtggcttgatctcggctcagtacaacctccgcctcccaagttcaagtaattctcctgcctcagcctcccgagtagctgggattacaggtgcgtgccaccacactatgctaa--tttttgtgttt---------------ttagtagagatggggtttcaccatgttggccaggctggtcttgaactcctgacttcaagtgatccacccaccttagcgtcccaaagtgctaggattataggtgtaagccactgtgtccagcctccatattttcaaacagagaattatattgattattttggaccatgtgtatacattggttataaagatcaatgaatttcattttaagacagtgaatagagtgtttc i macFas5.chr15 C 0 C 0 s papAnu2.chr15 94520233 1395 + 107442819 CTTAGGTTTAAGCTGATTTGAGGTTTCACTCACACAGGATATGAGACCTTGGGTGGGCTGTGGCACATGACAGACCTTACAATACAGAAGAGACTGGATCAAGACAGGAGAAGGCCGGGCTCTCCCTACGTTAACCACCCTCAC--GGGGGAGCAAAGCTGCTGGGAAACCCTCGCCTTTCGCCACCAGGGATTGAACCACATCCCTGCTGAGCTTCATCCAGAGAGCAGTGGAAAACGCCAGAATATGAGGTGGGGCATCAGACTTCTCCAGCCTTCAACTACGAGACAAGCGTCCCTTCAAACAGGCAGAAACAGAATGGAattcagtttgtttt-taaaaacaaaaccaaaaataaaccaGAGAGAAGAGCTTTTCTGACTGAGACCAGAAAACCAATACAGATAGTTCAGGTAATCATGccctttttctgattataaaaggcAAATTCCCTGCCGCAACCTGGAGTCAGTGTGAGCAAATAACAAGGTACCTAGGATTGCTTAGGGGCTGCAGAGAACCTATAGGTCAGAGTGACTCAACATTGAAAAGAGTTAGGCCAACAGAGGAGCTTGCGGGAGCTCAGCAGGTGGGAGGAGAGTGACATCACAGTTTCATGTCCTGGGCAATTCTTCTGCCAAAGTCGTACTTGGCTCCCACTGGGTGGCTACCACCCATGACTATAGCTTTCTCCCAGGGCCCCACCA-GTTCCAGGGAGGGACCAGCTGTCCTCACTCTCTGCTCCTAATGCAAGGGCTGCATCACCGCTCAATGGCTTCCCAGCCCCCGTGTTCACCTCTGTGAATAATCCCTGTACAGTTTCTAGGCTGCGGTGCC-CCCACTGAGCTCCTCACTGGCACAGGGGCATGTTGGGGAACTTGCAGTCA-TTTTTGCCATTTAGTGTAGTTGTGACCTGGCACTTACATAGTGAAATACAAATCATTGTATTACAAgttgttttt-tcttccatattttcttttgttt--gtttgtttgactttgtttttgtttttgttttgagacagagtcttgccttgttgcctaggctggagtgaagtagcatgatctcggctcagtacaacctccgcctcccaggttcaagcaattctcctgcctcagcctcctgagtagctgggattacaggtgcgtgccaccacactatgctaa--tttttgtgttt---------------ttagtagagatggggtttcaccatgttggccaggctggtctcgaactcctgacttcaagtgatccacccaccttagtgtcccaaagtgctaggattataggtgtaagccactgtgtccagcctccaTATTTT----CAGAGaattatattgattattttgGACCATGTGTATACATTGGTTATAAA-ATCAATGAATTTCATTTTAAGACAGTGAATAGAGTGtttc i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 98731918 1400 + 108555830 cttaggtttaagctgatttgaggtttcactcacACAGGAGATGAGACCTTGGGTGGGCTGTGGCACAGGACAGACCTTACAATACAGAAGAGACTGGATCAAGACAGGAGAAGGCCGGGCTCTCCCTACGTTAACCGCCCTCAC--GGGGGAGCAAAGCTGCTGGGAAACCCTCGCCTTTCGCCACCAGGTATTGAACCACATCCCTGCTGAGCTTCATCCAGAGAGCAGTGGAAAACGCCAGAATATGAGGTGGGGCATCAGCCTTCTCCAGCCTTCAACTACGAGACAAGCCTCCCTTCCAACAGAGAGAAACAGAATGGAATTCAGTTTGTTTT-TAAAAACAAAACCAAAAATAAACCAGAGAGAAGAGCTTTTCTGACTGAGACCAGAGAACCAATACAGATAGTTCAGGTAATCATGCCCTTTTTCTGATTATAAAAGGCAAATTCCCTGCCGCAACCTGGAGTCAGTGTGAGCAAATAACAAGGTACCTAGGATTGCTTAGGGGCTGCAGAGAACCTATAGGTCAGAGTGACTCAACATTGAAAAGAGTTAGGCCAACAGAGGAGCTTGTGGGAGCTCAGCAGGTGGGAGGAGAGTGACATCACGGTTTCATGTCCTGGGCCATTCTTCTGCCAAAGTCGTACTCAGCTCCCATTGGGTGGCTACCACCCACGACTATAGCTTTCTCCCAGGGTCCCACCAGGTCCCAGGGAGGGACCAGCTGTCCTCACTCTCCGCTCTTAACGCAAGGGCTGCACCACCCCTCGATGGCTCCCCAGCCTCCGTGTGCACCTCTGTGAATCATCCCTGTACAGTTTCTGGGCTGCGGTGCC-CCCACTGAGCTCCTCACTGGCACAGGGGCATGTTGGGGAACTTGCGGTCA-Tttttgccatttagtgcagttgtgacctggcacttacatagtgaaatacaaatcattgtattacaagttgttttt-tcttccatattttcttttgttt--gtttgtttgactttgtttttgtttttgttttgagacagagtctcgccttattgcccaggctggagtgaagtggcatgatctcggctcagtacaacctcctcctcccaagttcaagcaattctcctgcctcagcctcctgagtagctgggattacaggtgcgcgccaccacactatgctaa--tttttgtgttt---------------ttagtagagatggggtttcaccatgttggccaggctggtgtcgaactcctgacttcaagtgatccacccaccttagcgtcccaaagtgctaggattataggtgtaagccacagtgtccagcctccatattttcaaacagagaattatattgattattttggaccatgtgtatacactggttataaa-atcaatgaatttcattttaagacagtgaatagagtgtttc i chlSab2.chr12 C 0 C 0 e calJac3.chr1 77137189 1352 + 210400635 I a score=867509.000000 s hg38.chr9_GL383542v1_alt 57974 296 + 60032 taaatatctttt-aagggtgggctggaagaagggctgggtctcagag--ttggaaaccactgGTTAGGGATTTGGCGTCTTCCCTTCCCAAAGACTGCTAGACTCCATACACAATTATTCAACCCTTCCCAAATTCCAGCCTTCTGTACCCATAAATAAACAGCTTTGCCAGGCACCTAAAACAGCCAAAGTTCTTCTTTCACCTTTTTCCTGGTTTCCCACATACATAACGAAGATTTGCTCAAAGATGGCCTATACCAACAAGGGGGGAAATGTAATTTCTGGTAGGGCAAAGAAAA s panTro4.chr9 87002624 296 + 137840987 taaatatctttt-aagggtgggctggaagaagggctgggtctcagag--ttggaaaccactgGTTAGGGATTTGGCGCCTTCCCTTCCCAAAGACTGCTAGACTCCATACACAATTATTCAACCCTTCCCAAATTCCAGCCTTCTGTACCCATAAATAAACAGCTTTGCCAGGCACCTAAAACAGCCAAAGTTCTTCTTTCACCTTTTTCCTGGTTTCCCACATGCATAACGAAGATTTGCTCAAAGATGGCCTATACCAACAAAGGGGGAAATGTAATTTCTGGTAGGGCAAAGAAAA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83633773 288 + 135191526 taaatatctttt-aagggtgggctggaagaagggctgggtctcagag--ttggaaaccactTGTTAGGGATTTGGCGCCTTCCCTTCCCAAAGACTGCTAGACTCCATACACAATTATTCAACCCTTCCCAAATTCCAGCCTTCTGTACCCATAAATAAACAGCTTTGCCAGGCACCTAAGACAGCTGAAGTTCTTCTTTCACCTT--------TTTCCCACATGCATAACCAAGATTTGCTCAAAGATGGCCTATACCAACAAGGGGGGAAATATAATTTCTGGTAGGGCAAAGAAAA i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76141186 296 - 122973662 taaatatctttt-aagggtgggctggaagaagggctgggtctcagag--ttggaaaccactgGTTAGCGATTTGGCGCCTTCCCTTCCCAAAGACTTCTAGACTCCATACACAATTATTCAACCCTTCCCAAATTCCAGCCTTCTGTAGCCATAAATAAACAGCTTTGCCAGGCACCTAAGACAGTCAAAGTTCTTCTTTCACCTTTTTCCTGGTTTCCCACATGCGTAACCAAGATTTGCTCAAAGGTAGCCTATACCAGCAAGGGGGGAAATGTAGTTTCTGGTAGAGCAAAGAAAA i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 97587330 290 + 112192347 taaatatctttt-aagggtgggctaggagaagggctgggtctcatag--------accactgGTTAGGGATTTGGCCCCTTCCCTTCCCAAAGACTGCTAGACTCCATACATAATCATTCAACCCTCCCCAAATTCCAGCTTTCCGCACCTATAAATAAACAGCTTTGCCAGGCACCTAAGATAGCCCAAGTTCTCCTTTCACCTTTTTCCTGGTTTCCCACATGCATAACCAAGATTTGCTCAAAGACGGCCTATACCGACAAGGGGGGAAACGTAATTTCTGGTAGGGCAAAGAAAG i rheMac3.chr15 C 0 C 0 s macFas5.chr15 98808896 290 + 112612857 taaatatctttt-aagggtgggctaggagaagggctgggtctcatag--------ACCACTGGTTAGGGATTTGGCCCCTTCCCTTCCCAAAGACTGCTAGACTCCATACACAATCATTCAACCCTCCCCAAATTCCAGCTTTCCGCACCTATAAATAAACAGCTTTGCCAGGCACCTAAGACAGCCAAAGTTCTCCTTTCACCTTTTTCCTGGTTTCCCACATGCATAACCAAGATTTGCTCAAAGACGGCCTATACCGACAAGGGGGGAAACGTAATTTCTGGTAGGGCAAAGAAAG i macFas5.chr15 C 0 C 0 s papAnu2.chr15 94521628 299 + 107442819 taaatatcttttaaaaggtGGGCTAGGAGAAGGGCTGGGTCTCATAGAGTTGGAAACCACTGGTTAGGGATTTGGCCCCTTCCTTTCCCAAAGACTGCTAGACTCCATACACAATTATTCAACCCTTCCCAAATTCCAGCTTTCCGTACCCATAAATAAACAGCTTTGCCAGGCACCTAAGACAGCCAAAGTTCTTCTTTCACCTTTTTCCTGGTTTCCCACATGCATAACCAAGATTTGCTCAAAGACGGCCTATACCGACAAGGGGGGAAATGTAATTCCTGGTAGGGCAAAGAAAG i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 98733318 298 + 108555830 taaatatgtttt-aagggtgggctaggagaagggctgggtctcatagagttggaaaccactgGTTAGGGATTTGGCCCCTTCCCTTCCCAAAGACTGCTAGACTCCATACACAATTATTCAACCCTTCCCAAATTCCAGCTTTCCTTACCCATAAATAAACAGCTTTGCCAGGCACCTAAGACAGCCAAAGTTCTTCTTTCACCTTTTTCCTGGTTTCCCACATGCATAACCAAGATTTGCTCAAAGACGGCCTATACCGACAAGGGGGGAAACATAATTTCTGGTAGGGCAAAGAAAG i chlSab2.chr12 C 0 C 0 s calJac3.chr1 77138541 294 + 210400635 TATATATCCTTT-AAGAGTGGGCTGGAAGGAGGGCTGGGTCTCATAGAGTTGGAAACCACTGGTTAGGGATTTGGCCCCTTCCCTTCCCAAACACTGCTAGATTCCTTACACAATTATTCAACTCTT-CTAAATTCCAGCTTTTTTTACCCAGAAATAAACAGCTTTGTCAGG-ACCTAAGACAGCCAAAGTTCTTCTTTCACCTTTTTCCTGGTTTCCTACGTGCATAACCAAGATTTGCTCAAAGATGGCCTATA-CAACAAGGGGGGAAAT-TAATTTCTGGTAGGGCAAAGAAAA i calJac3.chr1 I 1352 C 0 a score=708280.000000 s hg38.chr9_GL383542v1_alt 58270 311 + 60032 TCATGTACTggctgggtacagtggctcatgcctgtaatcccagcactttgggaggccga-ggcaggtggatcacctgaggtcaggaattcaagaccagcctggacaacatggtgaaaaccccttctctactaaaaatacaaaaattagtcgggtttggtggcacacacctgtagatccagctactcaggaggctgaggcaggagaatcacttgaacccaggaggcagagtttgcagtgagctgagatcgtgccactgcactccagcctgggtgacagagc--gacactccatctaaaaac-aagc--------aaagaaaaaa s panTro4.chr9 87002920 311 + 137840987 TCATGTACTggctgggtgcagtggctcatgcctgtaatcccagcactttgggaggccga-ggcgggtggatcacctgaggtcaggagttcaagaccagcctggacaacatggtgaaaaccccttctctactaaaaatacaaaaattagtcgggtttggtggcacacacctgtagacccagctactcaggaggctgagggaggagaatcacttgaacccaggaggcagaggttgcagtgagctgagatcgtgccactgcactccagcctgggtgacagagc--gagactccatctaaaaac-aagc--------aaagaaaaaa i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83634061 319 + 135191526 TCATGTATTggctgggtgcagtggctcacacctgtaatcccagcactttgggaggccga-ggtgggtggatcacctgaggtcaggagttcaagaccagcctggccaacatggtgaaaaccccatctctactaaaaatacaaaaattagtcgggtgtggtggcacacatctgcagacccagctactcaggaggctgaggcaggagaatcacttgaacccgggaggcagaggttgcagtgagctgagatcatgccactgcactccagcctgggcgacagagc--gagactccatctaaaaac-aagcaaagaacaaaagaaaaaa i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76141482 321 - 122973662 TCATGTATTggctgggtgcagtggctcacgcctgtaatcccagtactttgggaggccga-ggcgggtggatcacctgaggtcaggagttcaagaccagcctggccaacatggcgaaaaccccgtctctactaagaatacaaaaattagccgggtgtggtggcacacacctgtagacccagctactcaggaggctgaggcaggagaatcacctgaacccaggaggcagaggttgcagggagctgagatcgtgccactgcactacagcctgggtgacagagcgagagattccatctaaaaaa-aagaaaagaaaaaaagaaaaaa i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 97587620 315 + 112192347 TCATGTATTggctgggctcagtggctcacgcctgtaatcccagcactttgggaggccaa-ggcgggtggatcacctgaggtcaggagttcaagaccagcctggccaacatggtg-aaatcccgtctctactaaaaatacaaaaattagccgggtgtggtggcgcacacctgtagtcccagctactcgggaggctgaggcaggagaatcacttgaacccaggagacagagattgcagtgagctgatattgcaccactgcactccagcctgggtaacagagt--gagactccatctaaaaaa----aagaaaaaaacagaaaaaa i rheMac3.chr15 C 0 C 0 s macFas5.chr15 98809186 315 + 112612857 TCATGTATTggctgggctcagtggctcacgcctgtaatcccagcactttgggaggccaa-ggcgggtggatcacctgaggtcaggagttcaagaccagcctggccaacatggtg-aaatcccgtctctactaaaaatacaaaaattagccgggtgtggtggcgcacacctgtagtcccagctactcgggaggctgaggcaggagaatcacttgaacccaggagacagagattgcagtgagctgatattgcaccactgcactccagcctgggtaacagagt--gagactccatctaaaaaa----aagaaaaaaacagaaaaaa i macFas5.chr15 C 0 C 0 s papAnu2.chr15 94521927 320 + 107442819 TCATGtattggctgggctcagtggctcatgcctgtaatcccagcactttgggaggccaagggcgggtggatcacctgaggtcaggagttcaagaccagcctggtcaacatggtg-aaatcccatctctactaaaaatacaaaaattagctgggcatggtggcatggagctacagtctcagctacttgggaggctgaggcaggagaatcacttgaactcaggagacagaggttgcagtgagctgagatcacgccactgcactccagcctgggtgacagagt--gagactccatctaaaaaaaaagaaaagaaaaacagaaaaaa i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 98733616 318 + 108555830 TCATGTATTggctgggctcagtggctcatgcctgtaatcccagcactttgggaggccaa-ggcgggtggatcatctgaggtcaggagttcaagaccagcctgaccaacatggtg-aaatcccgtctctaataaaaatacaaaaattagccaggtgtggtggcacgcagctgtagtcccagctactcgggaggctgaggcaggagaatcacttgaactcaggagacagaggttgcagtgagctgagatcgcgccactgcactccagcctgggtgacaaagt--gagactccatctaaaaaa-atgaaaagaaaaccagaaaaaa i chlSab2.chr12 C 0 C 0 e calJac3.chr1 77138835 0 + 210400635 C a score=3607072.000000 s hg38.chr9_GL383542v1_alt 58581 1250 + 60032 TCATGTATTATATTTCATGATGGTTATTCTAGGGGGAAAGGAAGGAAGGTAACCTGGCTGTACACCTGAGCATGTTCAGGCCTGGGC--TGTaccc-------tgacgtgcaccatctcctctactcctcacaacagcgggctctgcttttcccttcctggcacttatcaatatctggcggtttatatagcaattaaacttccttcctcaccacctcccaatgtgagctctgtgtagggagctgttttgctcactgttgtatcccaagcaccgaggacttcctggatgagagaggattttgaagaaatgtgtgttaaaATAATTGTGTTATgccaggtgcagtgactcatgcctgcaatcccagcactttgggaggctcaggcgggtggatcacttgaggtcaagagttcgagaccagcctggccaacatggtgaaaccccatttctaccgaaaatataaaaattagcctggtgttgtggaacatgtctgtaatcccagcacttagggaggccgaggtgggtggatcgcctgagctcaggagttcaa----------------------------------------------------------------------gaccagcctggccaacatgatgaaactctgtctcta-gaaaaatac-ataaaaaattagccagacatggtggcaggcgcctgtaaacccagctactcaggaggctgaggcagtagaatcgcttgagcctgggaggcagaggttgcagtgagccgagatcacatcattgtactccatccagcctgggcagcagagcgagaccctgACCCCACCCCCAACCCCTGCCAAAAAATTGTGTTATGACTtaggtattatcaatgccattccatgctgaggaacctgaggcttggagaaat------------------------------------------------tacaagactGTCtgtgatggtgaattttgtgtgtcaaccttgctaggccatggtgctcagctgtatggtcaaacacagttcagatgttgcggtgacagtattttaaagatgtgactaacgtttataatcggtactttgagtaaagcagacaactttcataatgtgaatgggcctcaaacaatctgttgaaagccttaaaagcaaagcctacgatttcccaaaaaagaaggaatcctgtctcgagactgcaacgtagaaacctcacctgagtttccagcctgctggcctgtggaattctgactcaaaactcaaacaccaactccagcctgaatcttcagcctgccagcctgccctgtggattttgggtttgccagctgccccaatcatgtgagccaactccttaaaataaaccCagatag s panTro4.chr9 87003231 1250 + 137840987 TCATGTATTATATTTCATGATGGTTATTCTAGGGGGAAAGGAAGGAAGGTAACCTGGCTGTACACCTGAGCATGTTCAGGCCTGGGC--TGTaccc-------tgacgtgcaccatctcctctactcctcacaacagcgggctctgcttttcccttcctggcacttatcaatatctggcggtttatatagcaattaaacttccttcctcaccacctcccaatgtgagctctgtgtagggagctgttttgctcactgctgtatcccaagcaccgaggacttcctggatgagagaggattttgaagaaatgtgtgttaaaATAATTGTGTTATgccaggtgcagtgactcatgcctgcaatcccagcactttgggaggctcaggcgggtggatcacttgaggtcaagagttcgagaccagcctggccgacatggtgaaaccccatttctaccaaaaatataaaaattagcctggtgtggtggaacatgtctgtaatcccagcacttagggaggccgaggtgggtggatcacctgagctcaggagttcaa----------------------------------------------------------------------gaccagcctggccaacatgatgaaactctgtctcta-gaaaaatac-ataaaaaattagccagacatggtggcaggcacctgtaaacccagctactcaggaggctgaggcagcagaatcgcttgagcctgggaggcagaggttgcagtgagccgagatcacgtcattgtactccatccagcctgggcagcagagcgagaccctgACCCCACCCCCAACCCCTGCCAAAAAATTGTGTtatgacttaggtattatcaatgccattccatgctgaggaacctgaggcttggagaaat------------------------------------------------tagaagactGTCtgtgatggtgaattttgtgtgtcaaccttgctaggccatggtgctcagctgtatggtcaaacacagttcagatgttgcggtgacagtattttaaagatgtgactaacatttataatcggtactttgagtaaagcagacaactttcataatgtgagtgggcctcaaacaatctgttgaaagccttaaaagcaaagcctacgatttcccaaaaaagaaggaatcctgtctcgagactgcaacgtagaaacctcacctgagtttccagcctgctggcctgtggaattctgactcaaaactcaaacaccaactccagcctgaatcttcagcctgccagcctgccctgtggattttgggtttgccagctgccccaatcatgtcagccaactccttaaaataaaccCagatag i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83634380 1252 + 135191526 TCATGTATTATATTTCATGATGGTTATTCTAGGGGGAAAGGAAGGAAGGTAACCTGGCTGTACACCTGAGCATGCTCAGGCCTGGGCTGTGTaccc-------tgacatgcaccatctcctctactcctcacaacagtgggctctccttttcccttcctagcactcattaatatctggcagtttatatagtaattaaacttccttcctcaccacctcccaatgtgagctctgtgtagggagctgttttgctcactgctgtatcccaagcaccgaggacttcctggatgagagaggattttgaagaaatgtgtgttaaaATAATCGTGTTATgccaggtgcagtgactcatgcctacaatcccagcactttgggaggctcaggcaggtggatcacttgaggtcaagagttcgagaccagcctggccaacatggtgaaatctcatttctaccgaaaatacaaaaattagcctggtgtggtggaacatgtctgtaatcccagcacttagggaggccgaggtgggtggatcgcctgagctcaggagctcaa----------------------------------------------------------------------gaccagcctggccaacatgatgaaaccctgtctcta-gaaaaatac-ataaaaaattagccagacatggtggcaggcacctgtaaacccagctactcaggaggctgaggcagtagaatcacttgagcctgggaggcagaggttgcagtgagccgagatcacatcattgcactccatccagcctgggcagcagagcgagaccctgACCCCACCCCCAACCCCTGCCAAAAAGTTGTGTtatgacttaggtattatcagtgccattccatgctgaggaacctgaggcttggagaaat------------------------------------------------tacaagactGTCtgtgatggtgaattttgtgtgtcaaccttgctaggccatggtgctcagctgtatggtcaaacacagttcagatgttgctgtgacagtattttaaagatgtgactaacatttataattggtactttgagtaaagaagacaacttgcataatgtgaatgggcctcaaacaatctgttgaaagccttaaaagcaaaacctaagatttcccaaaaaagaaggaatcctatctcgagactgcaacatagaaacctcacctgagtttccagcctgctggcctgtggaattctgactcaagactcaaacaccaactccaacctgaatcttcagcctgccagcctgccctatggattttgggtttgccagctgccccaatcatgtgagccaactccttaaaataaacctagatag i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76141803 1250 - 122973662 TCATGTATTATATTTCATGATGGTTATTCTAGGAGGAAAGGAAGGAAGGTAACCTGGCTGTACACCTGAGCATGCTCAGGCCTGGGC--Tataccc-------tgacgtgcaccatctcctctactcctcacaacagcgggctctgcttttcccttcctagcactcatcaatatctggcggtttatatagtaattaaacttccttcctcaccacctcccaatgtgagctctgtgtagggagctgttttgctcactgctgtatcccaagcaccgagcacttcctggatcagagaggattttgaagaaatgtgtgttaaaATAATCGTTTTATgccaggtgcagtgactcatgcctgcaatcccagcactttgggaggctcaggtgggtggatcacttgaggtcaagagttcgagaccagcctggccaacatggtgaaaccctatttctaccgaaaatacaaaaattagcctggtgtggtggaacatgtctgtaatcccagcacttagggaggccaaggtgggtggatctcctgagctcaggggttcga----------------------------------------------------------------------gactagcctggccaacatgatgaaaccctgtctcta-gaaaaatac-ataaaaaattagccagacatggtggcaggcgcctgtaaacccagctactcaggaggctgaggcagtagaatcgcttgagcctgggaggcagaggttgcagtgagccgagatcgcatcatcgcactccatccagcctgggcagcagagtgagaccctgACCCCACCCCCAACCCCTGCCAAAAAATTATGTtatgacttaggtattagcagtgccattctatgctgaggaacctgaggcttggagaaat------------------------------------------------tacaagactGTCtgtgatggtgaattttgtgtgtcaacctggctaggccatggtgctcagctgtatggtcaaatacagttcagatgttgctgtgacagtattttaaagatgtaactaacatttataattggtactttgagtaaagcagacaactttcataatgtgaatgggcctcaaacaatctgttgaaagccttaaaagcaaaacctaagatttcccaaaaaagaaggaatcctgtcttgagactgcaacatagaaacctcacctgagtttccagcctgctggcctgtggaattctgactcaagactctaacaccaattccgacctgaatcttcagtctgccagcctgccctatggattttgggtttgccagctgccccaatcatgtgagccaattccttaaaataaacccagatag i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 97587935 1295 + 112192347 aTATGTATTATATTTAATGATGGTTCTTCTAGGGGGAAGGCAAGGAAGGTAACCTGGCTGCACACCTGAGCATGCTCAGGCCTGTAC--TGTaccc-------tgacgtgcaccatctcctctgctccttacagcagcgggctctgcttttcccttcctagcactcatcaatatctggcggttaatatagtaattacacttccttcctcaccgcctcccaatgtgacctccatgtagcgagctgttttgctcactgctgtatcccaagcaccgagaacttcctggatcagagaggattttgaagaaatgtgtgtgaaaATAACCGTGTTATgtcaggtgcagtgactcatgcctgcaatcccagcactttgggaggctgaggcgggtggatcacttgaggtcaggagtttgagaccagcctggccaccattg--------------cactgaaaatacaaaagttagtcTggtgtggtggaacacgtctgtaatcccagcacttagggaggccgagg------------------------------nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn------------------------------nnnnnn-nnaaaatacaaaaaaaaattagccagacatggtggcaggcgcctgtaaacccagctacgcaggaggctgaggcactagaatcgcttgagcctgggaggcggaggttgctgtgagcagagatcgcatcattgcactccatccagcctgggcagcagagcgagaccctgACCCCACCACCAACCCCCGCCAAAAAATTGTGTTATGACTtaggtattatccatgccattccatgctgaggaacctgaggcttagagaaactaCAAGACCGTCTGTGATGGTGAATTTTGACCTGAGGCTTGGAGAAATTACAAGACCGTCtgtgatggtgaattttgtgtgtcaacctggctaggccatggtgctcagctgtatggtcaaatacagttcagatgttgctgtgacagtattttaaagatgtgactaacctttataattggtactttgagtaaagcagacacctttcataatgtgattgggcctcaaacaatctgttgaaagccttaaaagcaaaacctaagatttcctaaaaaagaaggaatcctgtctcaagactgcaacatagaaacctcacctgagtttccagcctgctggcctatggaattctgactcaagactgaaacaccaactccgacctgaatcttcagcctgccagcctgccctatggattttgggtttgccagctgccccagtcatgtgagccaattccttaaaataaaccCagatag i rheMac3.chr15 C 0 C 0 s macFas5.chr15 98809501 1285 + 112612857 aTATGTATTATATTTAATGATGGTTCTTCTAGGGGGAAGGCAAGGAAGGTAACCTGGCTGCACACCTGAGCATGCTCAGGCCTGTAC--TGTaccc-------tgacgtgcaccatctcctctgctccttacagcagcgggctctgcttttcccttcctagcactcatcaatatctggcggttaatatagtaattaaacttccttcctcaccgcctcccaatgtgagctccatgtagcgagctgttttgctcactgctgtatcccaagcaccgagaacttcctggatcagagaggattttgaagaaatgtgtgtgaaaATAACCGTGTTATgtcaggtgcagtgactcatgcctgcaatcccagcactttgggaggctgaggcgggtggatcacttgaggtcaggagtttgagaccagcctggccaccattg--------------cactgaaaatacaaaagttagtcTggtgtggtggaacacgtctgtaatcccagcacttagggaggccgaggtacgtggatcacctgagctccggagttcga----------------------------------------------------------------------gaccaacctggccaacatgatgaaaccctgtctcta-gaaaaatacaaaaaaaaattagccagacatggtggcaggcgcctgtaaacccagctacgcaggaggctgaggcactagaatcgcttgagcctgggaggcggaggttgctgtgagcagagattgcatcattgcacttcatccagcctgggcagcagagcgagaccctgACCCCACCCCCAACCCCCGCCAAAAAATTGTGTTATGACTtaggtattatccatgccattccatgctgaggaacctgaggcttagagaaactaCAAGACCGTCTGTGATGGTGAATTTTGACCTGAGGCTTGGAGAAATTACAAGACCGTCtgtgatggtgaattttgtgtgtcaacctggctaggccatggtgctcagctgtatggtcaaatacagttcagatgttgctgtgacagtattttaaagatgtgactaacctttataattggtactttgagtaaagcagacacctttcataatgtgattgggcctcaaacaatctgttgaaagccttaaaagcaaaacctaagatttcctaaaaaagaaggaatcctgtctcaagactgcaacatagaaacctcacctgagtttccagcctgctggcctatggaattctgactcaagactgaaacaccaactccgacctgaatcttcagcctgccagcctgccctatggattttgggtttgccagctgccccagtcatgtgagccaattccttaaaataaaccCagatag i macFas5.chr15 C 0 C 0 s papAnu2.chr15 94522247 1285 + 107442819 tcatGTATTATATTTAATGATGGTTCTTCTAGGGGGAAAGCGAGGAAGGTAACCTGGCTGTACACCTGAGCATGCTCAGGCCTGTAC--TGTACCC-------TGACGTGCACCATCTCCTCTACTCCTTACAGCAGCGGGCTCTGCTTTACCCTTCCTAGCACTCATCAATATCTGGCGGTTAATATAGTAATTAAACTTCCTTCCTCACCGCCTCCCAATGTGAGCTCCATGTAGCGAgctgttttgctcactgctgtatcccaATCACCAAGAACTTCCTGGATCAGAGGGGATTTTGAAGAAATGTGTGTGAAAATAACCATGTTAtgtcaggtgcagtgactcatgcctgcaatcccagcactttgggaggctgaggcgggtggatcacttgaggtcaggagtttgagaccagcctggccaccattg--------------cactgaaaatacaaaagttagtctggtgtggtggaacacgtctgtaatcccagcacttagggaggccgaggtgcgtggatcacctgagctccggagttcga----------------------------------------------------------------------gaccaacctggccaacatgatgaaaccctgtctcta-gaaaaatacaaaaaaaaattagccagacgtggtggcaggcgcctgtaaacccagctacacaggaggctgaggcactagaatcgcttgagcctgggaggcggaggttgctgtgagcagagatcgcatcattgcactccatccagcctgggcagcagagcgagaccctgaccccacccccaacccctgccaaAAAATTGTGTTATGACTTAGGTATTATCCATGCCATTCCATGCTGAGGAACCTGAGGCTTAGAGAAACTATAAGACCGTCTGTGATGGTGAATTTTGACCTGAGGCTTGGAGAAATTACAAGATCGTCTGTGATGGTGAATTTTGTGTGTCAACCTGGCTAGGCCATGGTGCTCAGCTGTATGGTCAAATGCAGTTCAGATGTTGCTGTGACAGTATTTTAAAGATGTGACTAACCTTTATAATTGgtactttgagtaaagcagacaCCTTTCATAATGTGATTGGGCCTCAAACAATCTGTTGACAGCCTTAAAAGCAAAACCTAAGATTTcctaaaaaagaaggaatcctgtCTCAAGACTGCAACATAGAAACCTCACgtgagtttccagcctgctggcctatGGAATTCTGACTCGAGACTGAAACATCAACTCCGACCTGAATCTtcagcctgccagcctgccctGTGGATTTCGGGTTTGCCAGCTGCCCCagtcatgtgagccaattccttaaaataaacccCgatag i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 98733934 1237 + 108555830 TCATGTATTCTATTTAATGATGGTTCTTCTAGGGGGAAAGCAAGGAAGGTAACCTGGCTGTACACCCGAGCATGCTCAGGCCTGTAC--TGTaccc-------tgacgtgcaccatctcctctactccttacagcagcgggctctgcttttcccttcctagcactcatcaatatctggcggttaatatagtaattaaacttccttcctcaccgcctcccaatgtgagctccatgtagggaactgttttgctcactgctgtatcccaagcaccaacagcttcctggatcagagaggattttgaagaaatgtgtgtgaaaATAACCATGTTATgtcaggtgcagtgactcatgcctgcaatcccagcactttgggaggctgaggcgggtggatcacttgaggtcaggagtttgagaccaggctggccaccattg--------------cactgaaaatacaaaagttagtcTggtgtggtggaacacgtctgtaatcccagcacttagggaggccgaggtgcgtggatcacctgagctccggagttcga----------------------------------------------------------------------gaccaacctggccaacatgatgaaaccctgtctcta-gaaaaatacaaaaaaaaattagccagacatggtggcaggcgcctgtaaacccagctacgcaggaggctgaggcagtagaatcgcttgagcctgggaggcggaggtggctgtgagcagagatcgcatcattgcactccatccagcctgggcagcagagcgagaccctgACCCCACCCCCAACCCCTGCCAAAAAATTGTGTTATGACTtaggtattatccatgccattccatgctgaggaacctgaggcttagagaaac------------------------------------------------taCAAGACGGTCtgtgatggtgaattttgtgtgtcaacctggctaggccatggtgctcagctgtatagtcaaatgcagttcagatgttgctgtgacagtattttaaagatgtgactaacctttataattggtactttgagtaaagcagacacctttcgtaatgtgattgggcctcaaacaatctgttgaaagccttaaaagcaaaacctaagatttcctaaaaaagaaggaatcctgtctgaagactgcaacatagaaacctcacctgagtttccagcctgctggcctatggaattctgactcaagactgaaacaccaactccgacctgaatcttcagcctgccagcctgccctatggattttgggtttgccagcggccccagtcatgtgagccaattccttaaaataaaccCagatag i chlSab2.chr12 C 0 C 0 s calJac3.chr1 77138835 1234 + 210400635 TCATGTATTATATTTCATAACGG---TTCCAGCGGGAGAGGAAGGAAGGCCACCTGGCTGCACACCTGTACATGCTCAGG-CTGGGC--TATGCCCCGACGTGCGACGTGCGCCATCTCCTCTACTCCTCACAACAGCAGCctctgcttttcccttcctagcactcatcaatatctggtggtttatatagtcattaaa----cttcctcaccacctcccaatgtgagctctatgtagggagctgttttgctcactgctgtgtccc-atcaccgagggcttcctggattagagaggatactgaagaaatgtatgttaaaATAGCCATGTTATgccaggtgcagtgactcatgcctgcaatcccagcagtttgggaggctgaggtgggtggatcacttgaggtcaggagtttgagaccagcctagccaacat-gtgaaaccccatctctactaaaaatgcaaaaattagccaggtgtggtggcacatgcctgtaatcccagcgctttgggaagctaaggtgggtggatcacctgagctcaggagtttga----------------------------------------------------------------------gacctgcctagccaacatggtgaaaccctgtctctacaaaaaatac-attaaaaattagccagacatggtttcgggtgcctgtaaacgcagatactcagggtgcttaggcaggagaatcacttgagcatgggaggcggaggttgcagtgagccgagattgcaccattgcactacatccagcct--------gagtgaGACCCTGACCCTACCCCTGACCCCTGCCAAAAAATTATGTtatgacttaggtattatcagtgccattccatgctaagaaa-ctgaggcttggagaagt------------------------------------------------taaaaaactGTCtgtgatggagaattttgtgtgtcagcctggctgggccatggtgctcagctgtatggtcagacacagtccagatgttgctgtgacagtattttaaagatgtgactcacatttataactggtattttgagtaaagcagacaactttcataatgtaaatgggcttcaaacaatctgttgaagatcttaagagcaaaacctaagatttcccaaaa---aaggaattctatctcaagactgcaacttag-aacctcgcctgagtttccagcctgctggcctgtggaattctgactcaagcctgaaacagcaacgcctacctgaatcttcagattgccagcctaccatatggattttgggtttgccagctgccccattcatgggagccaaatccttaaaataaa-CTAGATAg i calJac3.chr1 C 0 N 0 a score=269772.000000 s hg38.chr9_GL383542v1_alt 59831 137 + 60032 ataagt--------gatagatagatagatagatacataggcagatagacagag------------------agtatacc-tatatat------atagagagaGAATGAggtttctatgttgcagtcttgagacagaattccttcttttttgggaaatcatatatatatat s panTro4.chr9 87004481 143 + 137840987 ataagt--------gatagatagatagatagatacataggcagatagacagag------------------agtatacc-tatatatatatagatagatagaGAATGAggtttctatgttgcagtcttgagacagaattccttcttttttgggaaatcatatatatatat i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 83635632 145 + 135191526 ataagtgatagtcagatagatagatagatagatacataggcagatagacagaG------------------AGTATACC-TATATAT------GTAGATAGAGAATGAggtttctatgttgcagtcttgagacagaattccttcttttttgggaaatcatatatatatat i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 76143053 163 - 122973662 ataagtgatagttagagagatagatagatagatagatagagagagagagagagagagataggcaggtagacAGTATACC-TATATAT------ATAGATAGAGAATaaggtttctatgttgcagtcttgagacggaattctttcttttttgggaaatcatatacgtatat i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 97589230 133 + 112192347 ataagt------------gatagtcagatagatagataggcagatagacagat------------------agTGTACC-TATATAT------ATAGACAGAGAACGAggtttctatgttgcagtcttgagacagaatttcttcttttttgggaaatcatatatatatat i rheMac3.chr15 C 0 N 0 s macFas5.chr15 98810786 127 + 112612857 ataagt------------gatagtcagatagatagataggcagatagacagat------------------agtgtacc-tatatat------atagacagaGAACGAggtttctatgttgcagtcttgagacagaatttcttcttttttgggaaatcatatat------ i macFas5.chr15 C 0 C 0 s papAnu2.chr15 94523532 127 + 107442819 ataagt------------gatagtcagatagatagacaggcagatagacagat------------------agtgtacc-tatatat------atagaCCGAGAACGAGGTTTCTATGTTGCAGtcttgagacagaatttcttcttttttgggaaatcatatat------ i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 98735171 134 + 108555830 ataagt------------gatagtcagatagatagatagtgcgataggcagat------------------agtataccttatacat------atagacagaGAACGAggtttgtatgttgcagtcttgagacagaatttcttcttttttgggaaatcatatatatatat i chlSab2.chr12 C 0 N 0 a score=13206.000000 s hg38.chr9_GL383542v1_alt 59968 23 + 60032 gatatatatacacatatatatat s panTro4.chr9 87004624 23 + 137840987 gatatatacacacatatatatat i panTro4.chr9 C 0 N 0 s ponAbe2.chr9 83635777 23 + 135191526 gatatatatacatacacatatat i ponAbe2.chr9 C 0 I 6 s nomLeu3.chr1a 76143216 22 - 122973662 gatatatatacac-tatatatat i nomLeu3.chr1a C 0 I 2 s macFas5.chr15 98810913 10 + 112612857 -------------atatatatat i macFas5.chr15 C 0 C 0 s papAnu2.chr15 94523659 10 + 107442819 -------------atatatatat i papAnu2.chr15 C 0 C 0 a score=28874.000000 s hg38.chr9_GL383542v1_alt 59991 41 + 60032 aatctcctatgtatctatctatctaaatatgtatgtgtata s ponAbe2.chr9 83635806 41 + 135191526 aatctcctacgtatctatctatctagatatgtatgtgtata i ponAbe2.chr9 I 6 N 0 s nomLeu3.chr1a 76143240 36 - 122973662 aatct-----atatctatctatctagatatgtatgtgtata i nomLeu3.chr1a I 2 N 0 s macFas5.chr15 98810923 41 + 112612857 attctcttatgtatctgtctatctagatatgtatgtatata i macFas5.chr15 C 0 N 0 s papAnu2.chr15 94523669 41 + 107442819 tttctcttatgtatctgtctatctagatatgtatgtgtata i papAnu2.chr15 C 0 N 0