0 spMut,425 uniprot,1822 0.2 augustusGene,136 0.5 augustusGene,138 est,677 intronEst,752 mrna,393 xenoRefGene,264 000 blastCe6SG,100 est,637 gap,175 intronEst,712 1 augustusGene,310 chainCaePb1,616 chainCaeRem2,616 chainCb3,616 chainCe6,614 est,732 gap,174 intronEst,810 mrna,449 netCaePb1,75 netCaePb1,206 netCaePb1,529 netCaeRem2,75 netCaeRem2,206 netCaeRem2,529 netCb3,75 netCb3,206 netCb3,529 netCe6,73 netCe6,204 netCe6,527 tRNAs,93 tRNAs,462 uniprot,1110 uniprot,1314 uniprot,1346 uniprot,1490 uniprot,1927 xenoRefGene,387 1.0 chainCaeRem2,9 chainCaeRem2,27 chainCb3,9 chainCb3,27 netCaeRem2,9 netCaeRem2,60 netCb3,9 netCb3,60 10 uniprot,1928 100 augustusGene,134 chainCaePb1,559 chainCaeRem2,559 chainCb3,559 chainCe6,557 microsat,70 netCaePb1,497 netCaeRem2,497 netCb3,497 netCe6,495 1000 ctgPos2,80 gold,73 gold,129 1000-2000 augustusGene,161 1000000 spMut,427 uniprot,1824 103-7 chainCaePb1,617 chainCaeRem2,617 chainCb3,617 chainCe6,615 netCaePb1,530 netCaeRem2,530 netCb3,530 netCe6,528 106 ctgPos2,38 ctgPos2,61 gold,31 gold,54 11 tRNAs,409 tRNAs,411 tRNAs,505 11484-9 chainCaePb1,561 chainCaeRem2,561 chainCb3,561 chainCe6,559 netCaePb1,499 netCaeRem2,499 netCb3,499 netCe6,497 115-26 chainCaePb1,523 chainCaeRem2,523 chainCb3,523 chainCe6,521 11928468 chainCaePb1,525 chainCaeRem2,525 chainCb3,525 chainCe6,523 11932250 est,756 intronEst,834 mrna,473 xenoRefGene,317 12 est,752 intronEst,830 mrna,469 xenoRefGene,313 1247-56 tRNAs,508 12529312 chainCaePb1,619 chainCaeRem2,619 chainCb3,619 chainCe6,617 netCaePb1,532 netCaeRem2,532 netCb3,532 netCe6,530 13 chainCaePb1,615 chainCaeRem2,615 chainCb3,615 chainCe6,613 netCaePb1,528 netCaeRem2,528 netCb3,528 netCe6,526 134-41 chainCaePb1,588 chainCaeRem2,588 chainCb3,588 chainCe6,586 139 ctgPos2,43 ctgPos2,73 gold,36 gold,66 145 ctgPos2,51 gold,44 14500911 chainCaePb1,563 chainCaeRem2,563 chainCb3,563 chainCe6,561 netCaePb1,501 netCaeRem2,501 netCb3,501 netCe6,499 14534192 augustusGene,340 14681350 est,738 intronEst,816 mrna,455 15 chainCaePb1,585 chainCaeRem2,585 chainCb3,585 chainCe6,583 microsat,30 microsat,79 microsat,130 simpleRepeat,90 tRNAs,95 xenoRefGene,236 15108278 spMut,529 uniprot,2051 15608248 xenoRefGene,393 16 rmsk,328 16287941 chainCaePb1,590 chainCaeRem2,590 chainCb3,590 chainCe6,588 169 ctgPos2,41 gold,34 174 ctgPos2,71 gold,64 18 ctgPos2,47 gold,40 18218656 augustusGene,315 1870126 tRNAs,439 18984615 tRNAs,391 19 augustusGene,335 1988 tRNAs,350 1990 blastCe6SG,178 1991 tRNAs,432 1994 tRNAs,407 tRNAs,503 1997 tRNAs,460 1999 microsat,103 microsat,128 simpleRepeat,65 simpleRepeat,88 2 augustusGene,142 augustusGene,337 chainCaePb1,587 chainCaeRem2,587 chainCb3,587 chainCe6,585 ctgPos2,89 gold,82 microsat,66 microsat,132 netCaePb1,109 netCaePb1,114 netCaeRem2,109 netCaeRem2,114 netCb3,109 netCb3,114 netCe6,107 netCe6,112 simpleRepeat,92 uniprot,1121 uniprot,1331 2-3 uniprot,1572 20 chainCaePb1,560 chainCaeRem2,560 chainCb3,560 chainCe6,558 netCaePb1,498 netCaeRem2,498 netCb3,498 netCe6,496 tRNAs,123 2000 chainCaePb1,410 chainCaeRem2,410 chainCb3,410 chainCe6,408 rmsk,100 rmsk,326 2002 chainCaePb1,522 chainCaeRem2,522 chainCb3,522 chainCe6,520 est,750 intronEst,828 mrna,467 xenoRefGene,311 2003 augustusGene,333 chainCaePb1,556 chainCaePb1,613 chainCaeRem2,556 chainCaeRem2,613 chainCb3,556 chainCb3,613 chainCe6,554 chainCe6,611 netCaePb1,494 netCaePb1,526 netCaeRem2,494 netCaeRem2,526 netCb3,494 netCb3,526 netCe6,492 netCe6,524 2004 est,730 intronEst,808 mrna,447 spMut,523 uniprot,2045 2005 xenoRefGene,385 2006 chainCaePb1,583 chainCaeRem2,7 chainCaeRem2,25 chainCaeRem2,583 chainCb3,583 chainCe6,581 netCaeRem2,7 netCaeRem2,58 2007 chainCaePb1,7 chainCaePb1,25 chainCb3,7 chainCb3,25 ctgPos2,117 gap,192 gold,164 netCaePb1,7 netCaePb1,58 netCb3,7 netCb3,58 2008 augustusGene,308 chainCe6,7 chainCe6,24 netCe6,7 netCe6,57 2009 tRNAs,384 2012 spMut,478 uniprot,2000 2014 xenoRefGene,352 2022_03 uniprot,1911 2023 uniprot,1191 2079-88 tRNAs,412 215 blastCe6SG,181 22 chainCaePb1,586 chainCaeRem2,586 chainCb3,586 chainCe6,584 tRNAs,410 tRNAs,506 220 tRNAs,435 22102590 spMut,485 uniprot,2007 23 spMut,525 uniprot,2047 24 augustusGene,311 24259432 xenoRefGene,359 246 ctgPos2,53 gold,46 25 tRNAs,463 xenoRefGene,271 27 microsat,131 simpleRepeat,91 3 augustusGene,140 blastCe6SG,182 est,449 est,502 est,556 intronEst,108 intronEst,524 intronEst,577 intronEst,631 microsat,68 netCaePb1,121 netCaeRem2,121 netCb3,121 netCe6,119 tRNAs,436 uniprot,1123 uniprot,1194 3.1 augustusGene,24 30 chainCaePb1,558 chainCaeRem2,558 chainCb3,558 chainCe6,556 netCaePb1,496 netCaeRem2,496 netCb3,496 netCe6,494 32 est,733 intronEst,78 intronEst,811 mrna,450 33 xenoRefGene,388 357 ctgPos2,111 gold,104 37 tRNAs,386 4 est,753 intronEst,831 mrna,470 xenoRefGene,314 4.0 chainCaePb1,9 chainCaePb1,27 netCaePb1,9 netCaePb1,60 40 spMut,480 uniprot,2002 403-410 blastCe6SG,183 418-420 rmsk,330 42 xenoRefGene,354 45 tRNAs,180 45-60 tRNAs,200 464-70 spMut,527 uniprot,2049 5 augustusGene,312 blastCe6SG,180 ctgPos2,37 ctgPos2,60 est,446 est,487 est,513 gold,30 gold,53 intronEst,521 intronEst,562 intronEst,588 spMut,526 tRNAs,434 tRNAs,464 uniprot,2048 5-base gc5Base,6 gc5Base,27 5.0 ctgPos2,120 gap,195 gold,167 50 blastCe6SG,99 500 est,35 intronEst,46 569 ctgPos2,100 gold,93 573-80 microsat,133 simpleRepeat,93 60 blastCe6SG,114 blastCe6SG,126 blastCe6SG,134 60.0 tRNAs,166 637-44 augustusGene,313 64 ctgPos2,105 gold,98 656-64 est,754 intronEst,832 mrna,471 xenoRefGene,315 658 ctgPos2,90 gold,83 659-71 tRNAs,437 7 tRNAs,507 747 ctgPos2,42 gold,35 750 est,636 intronEst,711 752 ctgPos2,48 gold,41 8.92x ctgPos2,33 gold,26 8029015 tRNAs,414 8165140 tRNAs,510 817 ctgPos2,91 gold,84 823 ctgPos2,110 gold,103 84 ctgPos2,98 gold,91 852 ctgPos2,72 gold,65 873 ctgPos2,99 gold,92 9 rmsk,329 9023104 tRNAs,467 93 uniprot,1483 948 ctgPos2,52 gold,45 955-64 tRNAs,465 96 est,684 intronEst,759 mrna,400 9862982 microsat,135 simpleRepeat,95 99-100 tRNAs,81 _alt uniprot,1419 _fix uniprot,1421 a augustusGene,116 augustusGene,128 augustusGene,152 augustusGene,215 augustusGene,218 augustusGene,233 augustusGene,323 augustusGene,328 blastCe6SG,94 chainCaePb1,35 chainCaePb1,106 chainCaePb1,160 chainCaePb1,348 chainCaePb1,354 chainCaePb1,360 chainCaePb1,364 chainCaePb1,375 chainCaePb1,407 chainCaePb1,457 chainCaePb1,531 chainCaePb1,555 chainCaePb1,567 chainCaePb1,596 chainCaeRem2,35 chainCaeRem2,106 chainCaeRem2,160 chainCaeRem2,348 chainCaeRem2,354 chainCaeRem2,360 chainCaeRem2,364 chainCaeRem2,375 chainCaeRem2,407 chainCaeRem2,457 chainCaeRem2,531 chainCaeRem2,555 chainCaeRem2,567 chainCaeRem2,596 chainCb3,35 chainCb3,106 chainCb3,160 chainCb3,348 chainCb3,354 chainCb3,360 chainCb3,364 chainCb3,375 chainCb3,407 chainCb3,457 chainCb3,531 chainCb3,555 chainCb3,567 chainCb3,596 chainCe6,33 chainCe6,104 chainCe6,158 chainCe6,346 chainCe6,352 chainCe6,358 chainCe6,362 chainCe6,373 chainCe6,405 chainCe6,455 chainCe6,529 chainCe6,553 chainCe6,565 chainCe6,594 ctgPos2,64 est,118 est,135 est,170 est,196 est,377 est,436 est,440 est,566 est,592 est,600 est,653 est,672 gap,47 gap,51 gap,81 gap,87 gap,90 gap,96 gap,100 gap,163 gap,167 gc5Base,44 gold,57 intronEst,111 intronEst,145 intronEst,193 intronEst,210 intronEst,245 intronEst,271 intronEst,452 intronEst,511 intronEst,515 intronEst,641 intronEst,667 intronEst,675 intronEst,728 intronEst,747 microsat,53 microsat,119 mrna,64 mrna,81 mrna,116 mrna,142 mrna,323 mrna,369 mrna,388 netCaePb1,141 netCaePb1,151 netCaePb1,155 netCaePb1,222 netCaePb1,239 netCaePb1,242 netCaePb1,292 netCaePb1,306 netCaePb1,312 netCaePb1,318 netCaePb1,322 netCaePb1,325 netCaePb1,353 netCaePb1,469 netCaePb1,493 netCaePb1,509 netCaeRem2,141 netCaeRem2,151 netCaeRem2,155 netCaeRem2,222 netCaeRem2,239 netCaeRem2,242 netCaeRem2,292 netCaeRem2,306 netCaeRem2,312 netCaeRem2,318 netCaeRem2,322 netCaeRem2,325 netCaeRem2,353 netCaeRem2,469 netCaeRem2,493 netCaeRem2,509 netCb3,141 netCb3,151 netCb3,155 netCb3,222 netCb3,239 netCb3,242 netCb3,292 netCb3,306 netCb3,312 netCb3,318 netCb3,322 netCb3,325 netCb3,353 netCb3,469 netCb3,493 netCb3,509 netCe6,139 netCe6,149 netCe6,153 netCe6,220 netCe6,237 netCe6,240 netCe6,290 netCe6,304 netCe6,310 netCe6,316 netCe6,320 netCe6,323 netCe6,351 netCe6,467 netCe6,491 netCe6,507 quality,45 quality,60 rmsk,36 rmsk,56 rmsk,196 rmsk,315 simpleRepeat,79 spMut,54 spMut,65 spMut,124 spMut,134 spMut,158 spMut,165 spMut,187 spMut,207 spMut,335 spMut,381 spMut,409 spMut,495 spMut,501 spMut,510 tRNAs,35 tRNAs,59 tRNAs,68 tRNAs,86 tRNAs,120 tRNAs,131 tRNAs,144 tRNAs,253 tRNAs,310 tRNAs,371 tRNAs,445 tRNAs,471 tRNAs,475 tRNAs,491 uniprot,140 uniprot,311 uniprot,418 uniprot,459 uniprot,480 uniprot,490 uniprot,523 uniprot,603 uniprot,622 uniprot,708 uniprot,740 uniprot,759 uniprot,805 uniprot,965 uniprot,976 uniprot,988 uniprot,1001 uniprot,1048 uniprot,1071 uniprot,1152 uniprot,1164 uniprot,1179 uniprot,1217 uniprot,1226 uniprot,1234 uniprot,1239 uniprot,1286 uniprot,1458 uniprot,1599 uniprot,1634 uniprot,1735 uniprot,1779 uniprot,1807 uniprot,1922 uniprot,1949 uniprot,2017 uniprot,2023 uniprot,2032 xenoRefGene,240 xenoRefGene,259 xenoRefGene,329 xenoRefGene,372 a91-114-31-123 chainCaePb1,400 chainCaeRem2,400 chainCb3,400 chainCe6,398 aa chainCaePb1,463 chainCaePb1,573 chainCaeRem2,463 chainCaeRem2,573 chainCb3,463 chainCb3,573 chainCe6,461 chainCe6,571 unipModif,1 ab augustusGene,3 augustusGene,16 abbreviated chainCaePb1,307 chainCaeRem2,307 chainCb3,307 chainCe6,305 spMut,131 about est,34 est,403 intronEst,45 intronEst,478 microsat,98 mrna,340 netCaePb1,147 netCaePb1,160 netCaePb1,342 netCaeRem2,147 netCaeRem2,160 netCaeRem2,342 netCb3,147 netCb3,160 netCb3,342 netCe6,145 netCe6,158 netCe6,340 simpleRepeat,59 spMut,53 spMut,186 xenoRefGene,178 above netCaePb1,219 netCaePb1,231 netCaePb1,251 netCaeRem2,219 netCaeRem2,231 netCaeRem2,251 netCb3,219 netCb3,231 netCb3,251 netCe6,217 netCe6,229 netCe6,249 tRNAs,122 uniprot,1525 abundance chainCaePb1,142 chainCaeRem2,142 chainCb3,142 chainCe6,140 acad chainCaePb1,551 chainCaeRem2,551 chainCb3,551 chainCe6,549 netCaePb1,489 netCaeRem2,489 netCb3,489 netCe6,487 access spMut,310 spMut,441 uniprot,896 uniprot,1706 uniprot,1838 accession xenoRefGene,118 xenoRefGene,130 according augustusGene,114 accordingly tRNAs,281 acgt chainCaePb1,399 chainCaeRem2,399 chainCb3,399 chainCe6,397 acid blastCe6SG,66 spMut,6 spMut,87 spMut,121 unipModif,5 unipMut,4 uniprot,339 uniprot,351 acids blastCe6SG,140 est,728 intronEst,806 microsat,126 mrna,445 simpleRepeat,86 spMut,476 tRNAs,382 tRNAs,405 tRNAs,458 tRNAs,501 uniprot,620 uniprot,1998 xenoRefGene,350 xenoRefGene,383 acronym uniprot,546 added chainCaePb1,321 chainCaeRem2,321 chainCb3,321 chainCe6,319 uniprot,1187 additional rmsk,254 admin uniprot,1917 advanced spMut,34 advice chainCaePb1,440 chainCaePb1,483 chainCaeRem2,440 chainCaeRem2,483 chainCb3,440 chainCb3,483 chainCe6,438 chainCe6,481 netCaePb1,442 netCaeRem2,442 netCb3,442 netCe6,440 spMut,455 affine chainCaePb1,45 chainCaeRem2,45 chainCb3,45 chainCe6,43 after netCaePb1,400 netCaeRem2,400 netCb3,400 netCe6,398 uniprot,294 uniprot,1329 ag intronEst,85 again uniprot,629 uniprot,1500 against est,621 intronEst,37 intronEst,696 mrna,333 mrna,361 xenoRefGene,222 agarwala chainCaePb1,464 chainCaePb1,574 chainCaeRem2,464 chainCaeRem2,574 chainCb3,464 chainCb3,574 chainCe6,462 chainCe6,572 al xenoRefGene,341 alejo uniprot,1966 algorithm augustusGene,130 tRNAs,40 algorithms uniprot,52 align chainCaePb1,158 chainCaeRem2,158 chainCb3,158 chainCe6,156 est,651 intronEst,726 uniprot,1216 aligned blastCe6SG,49 blastCe6SG,74 chainCaePb1,310 chainCaeRem2,310 chainCb3,310 chainCe6,308 est,620 est,656 intronEst,36 intronEst,149 intronEst,695 intronEst,731 mrna,360 mrna,372 spMut,241 uniprot,783 uniprot,973 uniprot,1007 uniprot,1246 uniprot,1335 uniprot,1472 xenoRefGene,221 xenoRefGene,243 aligning chainCaePb1,95 chainCaePb1,241 chainCaePb1,271 chainCaeRem2,95 chainCaeRem2,241 chainCaeRem2,271 chainCb3,95 chainCb3,241 chainCb3,271 chainCe6,93 chainCe6,239 chainCe6,269 est,389 intronEst,464 uniprot,952 alignment blastCe6SG,172 chainCaePb1,218 chainCaeRem2,218 chainCb3,218 chainCe6,216 est,58 est,412 est,661 est,746 intronEst,136 intronEst,487 intronEst,736 intronEst,824 mrna,39 mrna,351 mrna,377 mrna,463 netCaePb1,11 netCaeRem2,11 netCb3,11 netCe6,10 spMut,274 unipAliSwissprot,4 unipAliTrembl,4 uniprot,108 uniprot,135 uniprot,191 uniprot,807 uniprot,914 uniprot,1175 uniprot,1429 uniprot,1523 uniprot,1620 uniprot,1629 uniprot,1636 uniprot,1642 uniprot,1704 uniprot,1862 xenoRefGene,232 xenoRefGene,248 xenoRefGene,307 alignments augustusGene,300 blastCe6SG,20 chainCaePb1,12 chainCaePb1,19 chainCaePb1,326 chainCaePb1,338 chainCaePb1,346 chainCaePb1,374 chainCaePb1,518 chainCaePb1,608 chainCaeRem2,12 chainCaeRem2,19 chainCaeRem2,326 chainCaeRem2,338 chainCaeRem2,346 chainCaeRem2,374 chainCaeRem2,518 chainCaeRem2,608 chainCb3,12 chainCb3,19 chainCb3,326 chainCb3,338 chainCb3,346 chainCb3,374 chainCb3,518 chainCb3,608 chainCe6,11 chainCe6,18 chainCe6,324 chainCe6,336 chainCe6,344 chainCe6,372 chainCe6,516 chainCe6,606 est,16 est,670 intronEst,17 intronEst,745 mrna,17 mrna,386 netCaePb1,134 netCaePb1,258 netCaePb1,521 netCaeRem2,134 netCaeRem2,258 netCaeRem2,521 netCb3,134 netCb3,258 netCb3,521 netCe6,132 netCe6,256 netCe6,519 rmsk,265 tRNAs,241 uniprot,82 uniprot,100 uniprot,637 uniprot,793 uniprot,814 uniprot,876 uniprot,1138 uniprot,1148 uniprot,1161 uniprot,1309 uniprot,1410 uniprot,1487 xenoRefGene,257 all augustusGene,207 chainCaePb1,345 chainCaeRem2,345 chainCb3,345 chainCe6,343 ctgPos2,107 est,192 est,246 est,290 est,385 est,456 gold,100 gold,145 intronEst,114 intronEst,267 intronEst,321 intronEst,365 intronEst,460 intronEst,531 mrna,138 mrna,192 mrna,236 rmsk,65 spMut,204 tRNAs,215 uniprot,89 uniprot,121 uniprot,204 uniprot,395 uniprot,956 uniprot,1107 uniprot,1167 uniprot,1311 uniprot,1337 uniprot,1343 uniprot,1418 uniprot,1542 uniprot,1685 uniprot,1979 allowed est,632 intronEst,707 allows augustusGene,168 chainCaePb1,40 chainCaeRem2,40 chainCb3,40 chainCe6,38 est,380 intronEst,455 mrna,326 xenoRefGene,149 aln unipAliSwissprot,2 unipAliTrembl,2 alone augustusGene,33 already netCaePb1,303 netCaeRem2,303 netCb3,303 netCe6,301 also blastCe6SG,142 chainCaePb1,51 chainCaeRem2,51 chainCb3,51 chainCe6,49 est,262 est,370 est,569 intronEst,337 intronEst,445 intronEst,644 mrna,208 mrna,316 spMut,401 uniprot,666 uniprot,706 uniprot,1799 alt uniprot,850 alter est,129 intronEst,204 mrna,75 alternating gold,123 alternative augustusGene,122 unipAliSwissprot,16 uniprot,163 uniprot,670 alternatives-from-sampling augustusGene,131 although tRNAs,133 altschul blastCe6SG,160 alus rmsk,131 always uniprot,503 uniprot,960 uniprot,1411 uniprot,1579 amino blastCe6SG,65 blastCe6SG,139 spMut,5 spMut,86 spMut,120 unipModif,4 unipMut,3 uniprot,338 uniprot,350 uniprot,619 amount rmsk,185 an chainCaePb1,114 chainCaePb1,141 chainCaePb1,147 chainCaeRem2,114 chainCaeRem2,141 chainCaeRem2,147 chainCb3,114 chainCb3,141 chainCb3,147 chainCe6,112 chainCe6,139 chainCe6,145 ctgPos2,76 est,418 est,465 est,548 gc5Base,65 gold,69 intronEst,61 intronEst,493 intronEst,540 intronEst,623 quality,79 rmsk,318 tRNAs,26 tRNAs,34 tRNAs,46 uniprot,765 uniprot,899 uniprot,1203 uniprot,1467 uniprot,1568 xenoRefGene,143 xenoRefGene,231 xenoRefGene,343 analysis spMut,328 tRNAs,400 tRNAs,495 uniprot,1648 uniprot,1728 analyze microsat,122 simpleRepeat,82 and augustusGene,9 augustusGene,60 augustusGene,74 augustusGene,87 augustusGene,206 augustusGene,271 augustusGene,277 augustusGene,296 augustusGene,327 blastCe6SG,12 blastCe6SG,130 blastCe6SG,205 chainCaePb1,58 chainCaePb1,73 chainCaePb1,190 chainCaePb1,196 chainCaePb1,208 chainCaePb1,221 chainCaePb1,316 chainCaePb1,353 chainCaePb1,362 chainCaePb1,436 chainCaePb1,487 chainCaePb1,493 chainCaePb1,504 chainCaePb1,541 chainCaePb1,546 chainCaeRem2,58 chainCaeRem2,73 chainCaeRem2,190 chainCaeRem2,196 chainCaeRem2,208 chainCaeRem2,221 chainCaeRem2,316 chainCaeRem2,353 chainCaeRem2,362 chainCaeRem2,436 chainCaeRem2,487 chainCaeRem2,493 chainCaeRem2,504 chainCaeRem2,541 chainCaeRem2,546 chainCb3,58 chainCb3,73 chainCb3,190 chainCb3,196 chainCb3,208 chainCb3,221 chainCb3,316 chainCb3,353 chainCb3,362 chainCb3,436 chainCb3,487 chainCb3,493 chainCb3,504 chainCb3,541 chainCb3,546 chainCe6,56 chainCe6,71 chainCe6,188 chainCe6,194 chainCe6,206 chainCe6,219 chainCe6,314 chainCe6,351 chainCe6,360 chainCe6,434 chainCe6,485 chainCe6,491 chainCe6,502 chainCe6,539 chainCe6,544 ctgPos2,5 est,10 est,26 est,48 est,88 est,132 est,282 est,425 est,439 est,447 est,575 est,681 gap,5 gap,28 gap,50 gap,105 gc5Base,9 gc5Base,22 gc5Base,74 gold,6 gold,125 gold,142 intronEst,11 intronEst,27 intronEst,82 intronEst,126 intronEst,163 intronEst,207 intronEst,357 intronEst,500 intronEst,514 intronEst,522 intronEst,650 intronEst,756 microsat,4 microsat,8 microsat,33 microsat,36 microsat,67 microsat,72 microsat,75 mrna,10 mrna,24 mrna,29 mrna,78 mrna,228 mrna,347 mrna,397 netCaePb1,41 netCaePb1,66 netCaePb1,123 netCaePb1,269 netCaePb1,347 netCaePb1,379 netCaePb1,390 netCaePb1,399 netCaePb1,409 netCaePb1,438 netCaePb1,449 netCaePb1,460 netCaePb1,479 netCaePb1,484 netCaeRem2,41 netCaeRem2,66 netCaeRem2,123 netCaeRem2,269 netCaeRem2,347 netCaeRem2,379 netCaeRem2,390 netCaeRem2,399 netCaeRem2,409 netCaeRem2,438 netCaeRem2,449 netCaeRem2,460 netCaeRem2,479 netCaeRem2,484 netCb3,41 netCb3,66 netCb3,123 netCb3,269 netCb3,347 netCb3,379 netCb3,390 netCb3,399 netCb3,409 netCb3,438 netCb3,449 netCb3,460 netCb3,479 netCb3,484 netCe6,40 netCe6,64 netCe6,121 netCe6,267 netCe6,345 netCe6,377 netCe6,388 netCe6,397 netCe6,407 netCe6,436 netCe6,447 netCe6,458 netCe6,477 netCe6,482 quality,9 quality,101 rmsk,7 rmsk,28 rmsk,108 rmsk,191 rmsk,222 rmsk,291 rmsk,297 rmsk,317 simpleRepeat,9 simpleRepeat,42 spMut,9 spMut,22 spMut,32 spMut,38 spMut,70 spMut,84 spMut,108 spMut,127 spMut,177 spMut,228 spMut,301 spMut,392 spMut,459 spMut,506 spMut,514 tRNAs,10 tRNAs,33 tRNAs,75 tRNAs,103 tRNAs,175 tRNAs,209 tRNAs,316 tRNAs,331 unipAliSwissprot,19 unipAliTrembl,11 unipChain,9 unipConflict,7 unipDisulfBond,7 unipDomain,5 unipInterest,7 unipLocCytopl,6 unipLocExtra,6 unipLocSignal,7 unipLocTransMemb,6 unipModif,8 unipMut,7 unipOther,7 unipRepeat,5 unipStruct,9 uniprot,8 uniprot,17 uniprot,174 uniprot,329 uniprot,345 uniprot,355 uniprot,369 uniprot,378 uniprot,403 uniprot,433 uniprot,439 uniprot,448 uniprot,488 uniprot,517 uniprot,568 uniprot,589 uniprot,611 uniprot,617 uniprot,702 uniprot,761 uniprot,796 uniprot,866 uniprot,926 uniprot,939 uniprot,1122 uniprot,1214 uniprot,1310 uniprot,1342 uniprot,1375 uniprot,1420 uniprot,1465 uniprot,1498 uniprot,1598 uniprot,1617 uniprot,1650 uniprot,1691 uniprot,1790 uniprot,1898 uniprot,1958 uniprot,1970 uniprot,2028 uniprot,2036 xenoRefGene,8 xenoRefGene,17 xenoRefGene,45 xenoRefGene,79 xenoRefGene,129 xenoRefGene,154 xenoRefGene,187 xenoRefGene,200 xenoRefGene,268 xenoRefGene,295 xenoRefGene,380 annot unipOther,2 annotated rmsk,67 spMut,144 uniprot,736 uniprot,994 uniprot,1014 uniprot,1027 uniprot,1034 uniprot,1040 uniprot,1053 uniprot,1082 uniprot,1233 uniprot,1265 annotation netCaePb1,53 netCaeRem2,53 netCb3,53 netCe6,52 rmsk,38 spMut,331 spMut,362 uniprot,143 uniprot,466 uniprot,487 uniprot,530 uniprot,605 uniprot,624 uniprot,1731 annotationonprotein uniprot,1929 annotations blastCe6SG,28 tRNAs,99 unipOther,5 unipStruct,7 uniprot,6 uniprot,18 uniprot,54 uniprot,96 uniprot,128 uniprot,171 uniprot,212 uniprot,363 uniprot,394 uniprot,397 uniprot,455 uniprot,501 uniprot,595 uniprot,631 uniprot,662 uniprot,704 uniprot,718 uniprot,763 uniprot,1438 uniprot,1504 uniprot,1514 uniprot,1757 xenoRefGene,188 answers spMut,72 any est,305 est,518 intronEst,380 intronEst,593 mrna,251 uniprot,660 uniprot,1146 uniprot,1250 anything tRNAs,118 appear tRNAs,326 apply est,188 intronEst,263 mrna,134 approach spMut,281 uniprot,1531 appropriate xenoRefGene,112 apr est,751 intronEst,829 mrna,468 tRNAs,504 xenoRefGene,312 apsects gc5Base,51 arbitrary gold,128 archaea tRNAs,104 archive uniprot,893 uniprot,1670 uniprot,1908 archives spMut,435 uniprot,1832 are augustusGene,27 chainCaePb1,102 chainCaePb1,173 chainCaePb1,184 chainCaePb1,230 chainCaePb1,416 chainCaeRem2,102 chainCaeRem2,173 chainCaeRem2,184 chainCaeRem2,230 chainCaeRem2,416 chainCb3,102 chainCb3,173 chainCb3,184 chainCb3,230 chainCb3,416 chainCe6,100 chainCe6,171 chainCe6,182 chainCe6,228 chainCe6,414 ctgPos2,36 est,30 est,67 est,149 est,159 gap,16 gap,117 gap,130 gap,171 gold,29 gold,117 gold,150 intronEst,41 intronEst,224 intronEst,234 intronEst,766 microsat,16 microsat,25 microsat,52 mrna,48 mrna,95 mrna,105 netCaePb1,77 netCaePb1,98 netCaePb1,105 netCaePb1,188 netCaeRem2,77 netCaeRem2,98 netCaeRem2,105 netCaeRem2,188 netCb3,77 netCb3,98 netCb3,105 netCb3,188 netCe6,75 netCe6,96 netCe6,103 netCe6,186 rmsk,43 rmsk,240 rmsk,247 rmsk,263 rmsk,271 simpleRepeat,49 spMut,60 spMut,116 spMut,174 spMut,180 tRNAs,105 tRNAs,168 tRNAs,190 tRNAs,202 tRNAs,262 tRNAs,266 tRNAs,292 tRNAs,297 tRNAs,333 uniprot,55 uniprot,93 uniprot,124 uniprot,146 uniprot,165 uniprot,175 uniprot,208 uniprot,456 uniprot,502 uniprot,555 uniprot,579 uniprot,596 uniprot,644 uniprot,679 uniprot,735 uniprot,868 uniprot,880 uniprot,1006 uniprot,1013 uniprot,1033 uniprot,1061 uniprot,1086 uniprot,1117 uniprot,1149 uniprot,1318 uniprot,1350 uniprot,1425 uniprot,1433 uniprot,1454 uniprot,1659 uniprot,1867 uniprot,1895 xenoRefGene,40 xenoRefGene,105 xenoRefGene,203 areas chainCaePb1,445 chainCaeRem2,445 chainCb3,445 chainCe6,443 gc5Base,37 arian rmsk,16 rmsk,287 articles spMut,214 spMut,219 tRNAs,365 artifical ctgPos2,66 ctgPos2,77 gap,182 gold,59 gold,70 spMut,85 artificially-introduced spMut,172 as augustusGene,77 augustusGene,79 chainCaePb1,453 chainCaeRem2,453 chainCb3,453 chainCe6,451 ctgPos2,63 est,565 gap,18 gold,56 gold,137 intronEst,640 microsat,21 netCaePb1,150 netCaePb1,190 netCaePb1,213 netCaePb1,228 netCaePb1,296 netCaePb1,351 netCaeRem2,150 netCaeRem2,190 netCaeRem2,213 netCaeRem2,228 netCaeRem2,296 netCaeRem2,351 netCb3,150 netCb3,190 netCb3,213 netCb3,228 netCb3,296 netCb3,351 netCe6,148 netCe6,188 netCe6,211 netCe6,226 netCe6,294 netCe6,349 quality,91 rmsk,53 rmsk,55 spMut,153 spMut,231 spMut,380 tRNAs,42 tRNAs,288 uniprot,307 uniprot,598 uniprot,600 uniprot,621 uniprot,1100 uniprot,1778 ascii uniprot,1762 aspects quality,67 assemble ctgPos2,15 assemblies augustusGene,196 augustusGene,237 chainCaePb1,229 chainCaePb1,305 chainCaeRem2,229 chainCaeRem2,305 chainCb3,229 chainCb3,305 chainCe6,227 chainCe6,303 assembly augustusGene,197 chainCaePb1,112 chainCaePb1,120 chainCaeRem2,112 chainCaeRem2,120 chainCb3,112 chainCb3,120 chainCe6,110 chainCe6,118 ctgPos2,2 ctgPos2,21 ctgPos2,122 gap,14 gap,64 gap,126 gap,179 gap,197 gold,1 gold,2 gold,14 gold,169 netCaePb1,63 netCaeRem2,63 netCb3,63 netCe6,61 quality,26 quality,97 uniprot,445 uniprot,701 associated est,110 gc5Base,34 intronEst,185 rmsk,194 simpleRepeat,51 uniprot,787 astashyn xenoRefGene,328 at blastCe6SG,132 chainCaePb1,425 chainCaePb1,471 chainCaePb1,476 chainCaeRem2,425 chainCaeRem2,471 chainCaeRem2,476 chainCb3,425 chainCb3,471 chainCb3,476 chainCe6,423 chainCe6,469 chainCe6,474 ctgPos2,108 est,517 est,562 est,682 est,698 gold,101 intronEst,67 intronEst,76 intronEst,101 intronEst,592 intronEst,637 intronEst,757 intronEst,776 microsat,28 microsat,77 mrna,398 mrna,415 netCaePb1,107 netCaePb1,291 netCaePb1,414 netCaePb1,427 netCaeRem2,107 netCaeRem2,291 netCaeRem2,414 netCaeRem2,427 netCb3,107 netCb3,291 netCb3,414 netCb3,427 netCe6,105 netCe6,289 netCe6,412 netCe6,425 quality,29 spMut,123 spMut,145 spMut,469 tRNAs,107 tRNAs,339 uniprot,825 uniprot,1946 uniprot,1991 xenoRefGene,93 xenoRefGene,269 xenoRefGene,285 attempt est,549 intronEst,624 atypical tRNAs,274 aug tRNAs,433 augustus augustusGene,1 augustusGene,2 augustusGene,22 augustusGene,148 augustusGene,256 uniprot,835 uniprot,867 auml chainCaePb1,461 chainCaePb1,571 chainCaeRem2,461 chainCaeRem2,571 chainCb3,461 chainCb3,571 chainCe6,459 chainCe6,569 automated spMut,327 uniprot,1468 uniprot,1727 automatically uniprot,1565 av spMut,493 uniprot,2015 available augustusGene,239 rmsk,73 rmsk,225 rmsk,242 tRNAs,106 uniprot,881 uniprot,1660 uniprot,1981 averaged quality,52 aware uniprot,1456 axt chainCaePb1,337 chainCaeRem2,337 chainCb3,337 chainCe6,335 axtchain chainCaePb1,342 chainCaePb1,467 chainCaeRem2,342 chainCaeRem2,467 chainCb3,342 chainCb3,467 chainCe6,340 chainCe6,465 b tRNAs,36 back chainCaePb1,322 chainCaeRem2,322 chainCb3,322 chainCe6,320 bacteria tRNAs,102 baertsch augustusGene,290 chainCaePb1,503 chainCaePb1,528 chainCaePb1,599 chainCaeRem2,503 chainCaeRem2,528 chainCaeRem2,599 chainCb3,503 chainCb3,528 chainCb3,599 chainCe6,501 chainCe6,526 chainCe6,597 netCaePb1,459 netCaePb1,466 netCaePb1,512 netCaeRem2,459 netCaeRem2,466 netCaeRem2,512 netCb3,459 netCb3,466 netCb3,512 netCe6,457 netCe6,464 netCe6,510 bairoch spMut,500 uniprot,2022 base est,375 est,409 est,665 est,673 est,685 gold,130 intronEst,450 intronEst,484 intronEst,740 intronEst,748 intronEst,760 mrna,348 mrna,381 mrna,389 mrna,401 quality,23 quality,40 rmsk,187 rmsk,189 rmsk,192 xenoRefGene,252 xenoRefGene,260 xenoRefGene,272 based augustusGene,28 chainCaePb1,232 chainCaePb1,258 chainCaeRem2,232 chainCaeRem2,258 chainCb3,232 chainCb3,258 chainCe6,230 chainCe6,256 tRNAs,268 uniprot,60 uniprot,727 uniprot,1604 bases ctgPos2,44 ctgPos2,54 ctgPos2,74 ctgPos2,92 ctgPos2,101 ctgPos2,112 est,36 est,386 est,638 gc5Base,25 gold,37 gold,47 gold,67 gold,85 gold,94 gold,105 intronEst,47 intronEst,79 intronEst,461 intronEst,713 basic blastCe6SG,170 basis uniprot,1570 bbi spMut,419 be augustusGene,99 chainCaePb1,68 chainCaeRem2,68 chainCb3,68 chainCe6,66 est,109 est,122 est,144 est,253 est,263 est,294 est,312 est,322 est,371 est,497 est,605 gc5Base,41 intronEst,58 intronEst,184 intronEst,197 intronEst,219 intronEst,328 intronEst,338 intronEst,369 intronEst,387 intronEst,397 intronEst,446 intronEst,572 intronEst,680 microsat,19 microsat,39 mrna,68 mrna,90 mrna,199 mrna,209 mrna,240 mrna,258 mrna,268 mrna,317 netCaePb1,117 netCaeRem2,117 netCb3,117 netCe6,115 quality,57 rmsk,235 rmsk,257 simpleRepeat,44 spMut,315 spMut,340 spMut,364 spMut,372 spMut,395 spMut,402 tRNAs,128 tRNAs,220 tRNAs,227 uniprot,181 uniprot,246 uniprot,1094 uniprot,1105 uniprot,1143 uniprot,1197 uniprot,1270 uniprot,1327 uniprot,1556 uniprot,1694 uniprot,1715 uniprot,1740 uniprot,1750 uniprot,1759 uniprot,1770 uniprot,1793 uniprot,1800 uniprot,1882 xenoRefGene,88 bears est,94 intronEst,169 because est,597 intronEst,672 uniprot,674 been chainCaePb1,292 chainCaeRem2,292 chainCb3,292 chainCe6,290 ctgPos2,30 gold,23 intronEst,8 rmsk,70 spMut,97 uniprot,34 uniprot,47 uniprot,303 uniprot,1043 before est,534 intronEst,609 netCaePb1,398 netCaeRem2,398 netCb3,398 netCe6,396 uniprot,934 being spMut,154 below chainCaePb1,406 chainCaeRem2,406 chainCb3,406 chainCe6,404 rmsk,105 tRNAs,179 uniprot,73 uniprot,92 uniprot,189 uniprot,207 uniprot,769 uniprot,898 benson est,715 intronEst,793 microsat,102 microsat,112 microsat,114 mrna,432 simpleRepeat,64 simpleRepeat,72 simpleRepeat,74 best blastCe6SG,107 est,680 intronEst,755 mrna,396 netCaePb1,20 netCaePb1,200 netCaeRem2,20 netCaeRem2,200 netCb3,20 netCb3,200 netCe6,19 netCe6,198 uniprot,1074 uniprot,1415 xenoRefGene,267 beta uniprot,364 better est,74 mrna,55 tRNAs,254 between chainCaePb1,347 chainCaeRem2,347 chainCb3,347 chainCe6,345 ctgPos2,81 est,17 est,85 gap,74 gap,139 gold,74 gold,133 gold,139 intronEst,18 intronEst,160 mrna,18 netCaePb1,345 netCaeRem2,345 netCb3,345 netCe6,343 tRNAs,199 uniprot,375 uniprot,922 uniprot,1371 uniprot,1615 bias uniprot,400 bigbed spMut,336 uniprot,1736 bigbedtobed spMut,369 spMut,414 uniprot,1767 uniprot,1812 binaries spMut,393 uniprot,1791 binary spMut,383 uniprot,1781 biochemical tRNAs,271 biocomput chainCaePb1,521 chainCaeRem2,521 chainCb3,521 chainCe6,519 bioinformatics augustusGene,307 augustusGene,332 chainCaePb1,582 chainCaeRem2,582 chainCb3,582 chainCe6,580 biol blastCe6SG,177 tRNAs,431 biological uniprot,320 birds augustusGene,203 bits tRNAs,124 tRNAs,167 tRNAs,201 black gap,19 gap,58 blast blastCe6SG,151 blastCe6SG,158 uniprot,949 uniprot,1084 uniprot,1115 blast-like est,745 intronEst,823 mrna,462 xenoRefGene,306 blastz chainCaePb1,312 chainCaePb1,422 chainCaePb1,610 chainCaeRem2,312 chainCaeRem2,422 chainCaeRem2,610 chainCb3,312 chainCb3,422 chainCb3,610 chainCe6,310 chainCe6,420 chainCe6,608 netCaePb1,257 netCaePb1,424 netCaePb1,523 netCaeRem2,257 netCaeRem2,424 netCaeRem2,523 netCb3,257 netCb3,424 netCb3,523 netCe6,255 netCe6,422 netCe6,521 blat blastCe6SG,57 blastCe6SG,184 est,625 est,634 est,743 intronEst,700 intronEst,709 intronEst,821 mrna,366 mrna,460 spMut,247 xenoRefGene,228 blat--the xenoRefGene,305 blocks chainCaePb1,371 chainCaePb1,392 chainCaeRem2,371 chainCaeRem2,392 chainCb3,371 chainCb3,392 chainCe6,369 chainCe6,390 gold,144 blue unipAliSwissprot,11 unipAliSwissprot,15 uniprot,507 uniprot,583 bolchi tRNAs,474 bond uniprot,473 bonds unipDisulfBond,2 unipDisulfBond,5 uniprot,334 uniprot,336 both chainCaePb1,55 chainCaePb1,77 chainCaePb1,132 chainCaeRem2,55 chainCaeRem2,77 chainCaeRem2,132 chainCb3,55 chainCb3,77 chainCb3,132 chainCe6,53 chainCe6,75 chainCe6,130 netCaePb1,388 netCaeRem2,388 netCb3,388 netCe6,386 tRNAs,329 uniprot,675 uniprot,1616 xenoRefGene,126 xenoRefGene,197 boundaries blastCe6SG,62 gold,116 box chainCaePb1,282 chainCaeRem2,282 chainCb3,282 chainCe6,280 est,208 est,219 est,259 gap,59 intronEst,283 intronEst,294 intronEst,334 mrna,154 mrna,165 mrna,205 netCaePb1,142 netCaeRem2,142 netCb3,142 netCe6,140 tRNAs,37 xenoRefGene,216 boxes chainCaePb1,83 chainCaePb1,93 chainCaeRem2,83 chainCaeRem2,93 chainCb3,83 chainCb3,93 chainCe6,81 chainCe6,91 est,179 gap,20 intronEst,254 mrna,125 netCaePb1,131 netCaeRem2,131 netCb3,131 netCe6,129 branch-point augustusGene,55 brenneri chainCaePb1,2 chainCaePb1,5 chainCaePb1,22 chainCaePb1,57 chainCaePb1,111 chainCaePb1,297 chainCaePb1,351 netCaePb1,2 netCaePb1,5 netCaePb1,22 netCaePb1,48 brian blastCe6SG,203 spMut,460 uniprot,1959 bridged gap,48 briefly uniprot,778 briggsae chainCb3,2 chainCb3,5 chainCb3,22 chainCb3,57 chainCb3,111 chainCb3,297 chainCb3,351 netCb3,2 netCb3,5 netCb3,22 netCb3,48 brown gold,126 gold,143 xenoRefGene,322 browser chainCaePb1,491 chainCaeRem2,491 chainCb3,491 chainCe6,489 ctgPos2,57 est,226 est,339 est,356 gold,50 intronEst,301 intronEst,414 intronEst,431 mrna,172 mrna,285 mrna,302 netCaePb1,447 netCaeRem2,447 netCb3,447 netCe6,445 spMut,43 spMut,321 uniprot,1544 uniprot,1721 browsing uniprot,1662 bruccoleri tRNAs,353 build uniprot,1552 built augustusGene,51 augustusGene,67 burks tRNAs,419 but blastCe6SG,101 est,454 est,511 est,564 gap,147 intronEst,529 intronEst,586 intronEst,639 netCaePb1,233 netCaeRem2,233 netCb3,233 netCe6,231 rmsk,270 spMut,148 uniprot,638 uniprot,1047 button chainCaePb1,253 chainCaeRem2,253 chainCb3,253 chainCe6,251 by augustusGene,147 augustusGene,266 augustusGene,282 blastCe6SG,8 blastCe6SG,187 blastCe6SG,200 chainCaePb1,70 chainCaePb1,86 chainCaePb1,223 chainCaePb1,286 chainCaePb1,429 chainCaePb1,455 chainCaePb1,479 chainCaePb1,501 chainCaeRem2,70 chainCaeRem2,86 chainCaeRem2,223 chainCaeRem2,286 chainCaeRem2,429 chainCaeRem2,455 chainCaeRem2,479 chainCaeRem2,501 chainCb3,70 chainCb3,86 chainCb3,223 chainCb3,286 chainCb3,429 chainCb3,455 chainCb3,479 chainCb3,501 chainCe6,68 chainCe6,84 chainCe6,221 chainCe6,284 chainCe6,427 chainCe6,453 chainCe6,477 chainCe6,499 ctgPos2,125 est,464 est,633 est,711 gap,41 gap,119 gap,143 gap,149 gap,173 gap,200 gc5Base,81 gold,119 gold,172 intronEst,87 intronEst,539 intronEst,708 intronEst,789 microsat,110 mrna,428 netCaePb1,101 netCaePb1,119 netCaePb1,305 netCaePb1,421 netCaePb1,431 netCaePb1,457 netCaeRem2,101 netCaeRem2,119 netCaeRem2,305 netCaeRem2,421 netCaeRem2,431 netCaeRem2,457 netCb3,101 netCb3,119 netCb3,305 netCb3,421 netCb3,431 netCb3,457 netCe6,99 netCe6,117 netCe6,303 netCe6,419 netCe6,429 netCe6,455 quality,107 rmsk,4 rmsk,14 rmsk,50 simpleRepeat,6 simpleRepeat,22 simpleRepeat,70 spMut,20 spMut,29 spMut,33 spMut,102 spMut,233 spMut,288 spMut,451 tRNAs,20 tRNAs,335 tRNAs,347 tRNAs,490 uniprot,39 uniprot,49 uniprot,224 uniprot,713 uniprot,720 uniprot,818 uniprot,987 uniprot,995 uniprot,1015 uniprot,1028 uniprot,1045 uniprot,1538 uniprot,1764 uniprot,1943 xenoRefGene,102 xenoRefGene,107 xenoRefGene,171 xenoRefGene,189 xenoRefGene,195 xenoRefGene,292 xenoRefGene,297 c blastCe6SG,3 blastCe6SG,30 blastCe6SG,43 blastCe6SG,52 chainCaePb1,1 chainCaePb1,4 chainCaePb1,21 chainCaePb1,56 chainCaePb1,110 chainCaePb1,296 chainCaePb1,350 chainCaeRem2,1 chainCaeRem2,4 chainCaeRem2,21 chainCaeRem2,56 chainCaeRem2,110 chainCaeRem2,296 chainCaeRem2,350 chainCb3,1 chainCb3,4 chainCb3,21 chainCb3,56 chainCb3,110 chainCb3,296 chainCb3,350 chainCe6,1 chainCe6,4 chainCe6,20 chainCe6,54 chainCe6,108 chainCe6,294 chainCe6,348 gc5Base,23 netCaePb1,1 netCaePb1,4 netCaePb1,21 netCaePb1,47 netCaeRem2,1 netCaeRem2,4 netCaeRem2,21 netCaeRem2,47 netCb3,1 netCb3,4 netCb3,21 netCb3,47 netCe6,1 netCe6,4 netCe6,20 netCe6,46 tRNAs,349 tRNAs,420 c-114100-125-31 chainCaePb1,401 chainCaeRem2,401 chainCb3,401 chainCe6,399 c.elegans blastCe6SG,1 caenorhabditis augustusGene,212 caepb1 chainCaePb1,10 chainCaePb1,23 chainCaePb1,28 netCaePb1,10 netCaePb1,61 netCaePb1,62 caerem2 chainCaeRem2,10 chainCaeRem2,23 chainCaeRem2,28 netCaeRem2,10 netCaeRem2,61 netCaeRem2,62 california chainCaePb1,475 chainCaeRem2,475 chainCb3,475 chainCe6,473 netCaePb1,418 netCaeRem2,418 netCb3,418 netCe6,416 called spMut,354 can augustusGene,98 chainCaePb1,50 chainCaePb1,67 chainCaeRem2,50 chainCaeRem2,67 chainCb3,50 chainCb3,67 chainCe6,48 chainCe6,65 est,121 est,252 intronEst,196 intronEst,327 mrna,67 mrna,198 simpleRepeat,35 spMut,314 spMut,339 spMut,363 spMut,371 spMut,394 spMut,400 uniprot,180 uniprot,656 uniprot,1064 uniprot,1093 uniprot,1104 uniprot,1326 uniprot,1555 uniprot,1693 uniprot,1714 uniprot,1739 uniprot,1749 uniprot,1758 uniprot,1769 uniprot,1792 uniprot,1798 uniprot,1881 xenoRefGene,87 candidates tRNAs,51 tRNAs,57 cannot uniprot,1269 canonical intronEst,70 cap-selected est,527 intronEst,602 cap-selection est,536 intronEst,611 carefully tRNAs,229 cases chainCaePb1,154 chainCaeRem2,154 chainCb3,154 chainCe6,152 netCaePb1,88 netCaeRem2,88 netCb3,88 netCe6,86 tRNAs,224 uniprot,757 uniprot,1183 uniprot,1452 cat uniprot,1936 categorized netCaePb1,189 netCaeRem2,189 netCb3,189 netCe6,187 cauldron chainCaePb1,538 chainCaeRem2,538 chainCb3,538 chainCe6,536 netCaePb1,476 netCaeRem2,476 netCb3,476 netCe6,474 cause netCaePb1,171 netCaeRem2,171 netCb3,171 netCe6,169 caused chainCaePb1,69 chainCaeRem2,69 chainCb3,69 chainCe6,67 cb3 chainCb3,10 chainCb3,23 chainCb3,28 netCb3,10 netCb3,61 netCb3,62 cdna augustusGene,299 est,429 est,432 intronEst,504 intronEst,507 ce6 blastCe6SG,35 chainCe6,9 chainCe6,22 chainCe6,26 netCe6,9 netCe6,59 netCe6,60 cell uniprot,563 cells est,424 intronEst,499 cerevisiae augustusGene,222 certain rmsk,260 chain chainCaePb1,3 chainCaePb1,80 chainCaeRem2,3 chainCaeRem2,80 chainCb3,3 chainCb3,80 chainCe6,3 chainCe6,78 netCaePb1,25 netCaePb1,94 netCaePb1,149 netCaePb1,265 netCaePb1,308 netCaePb1,319 netCaePb1,327 netCaePb1,332 netCaePb1,355 netCaePb1,364 netCaeRem2,25 netCaeRem2,94 netCaeRem2,149 netCaeRem2,265 netCaeRem2,308 netCaeRem2,319 netCaeRem2,327 netCaeRem2,332 netCaeRem2,355 netCaeRem2,364 netCb3,25 netCb3,94 netCb3,149 netCb3,265 netCb3,308 netCb3,319 netCb3,327 netCb3,332 netCb3,355 netCb3,364 netCe6,24 netCe6,92 netCe6,147 netCe6,263 netCe6,306 netCe6,317 netCe6,325 netCe6,330 netCe6,353 netCe6,362 uniprot,290 chained blastCe6SG,9 blastCe6SG,91 chainCaePb1,11 chainCaeRem2,11 chainCb3,11 chainCe6,10 chainnet netCaePb1,282 netCaePb1,407 netCaeRem2,282 netCaeRem2,407 netCb3,282 netCb3,407 netCe6,280 netCe6,405 chains blastCe6SG,109 blastCe6SG,122 chainCaePb1,157 chainCaePb1,169 chainCaePb1,180 chainCaePb1,226 chainCaePb1,265 chainCaePb1,389 chainCaePb1,404 chainCaePb1,415 chainCaePb1,498 chainCaeRem2,157 chainCaeRem2,169 chainCaeRem2,180 chainCaeRem2,226 chainCaeRem2,265 chainCaeRem2,389 chainCaeRem2,404 chainCaeRem2,415 chainCaeRem2,498 chainCb3,157 chainCb3,169 chainCb3,180 chainCb3,226 chainCb3,265 chainCb3,389 chainCb3,404 chainCb3,415 chainCb3,498 chainCe6,155 chainCe6,167 chainCe6,178 chainCe6,224 chainCe6,263 chainCe6,387 chainCe6,402 chainCe6,413 chainCe6,496 netCaePb1,76 netCaePb1,81 netCaePb1,103 netCaePb1,115 netCaePb1,122 netCaePb1,179 netCaePb1,253 netCaePb1,274 netCaePb1,289 netCaePb1,349 netCaePb1,380 netCaeRem2,76 netCaeRem2,81 netCaeRem2,103 netCaeRem2,115 netCaeRem2,122 netCaeRem2,179 netCaeRem2,253 netCaeRem2,274 netCaeRem2,289 netCaeRem2,349 netCaeRem2,380 netCb3,76 netCb3,81 netCb3,103 netCb3,115 netCb3,122 netCb3,179 netCb3,253 netCb3,274 netCb3,289 netCb3,349 netCb3,380 netCe6,74 netCe6,79 netCe6,101 netCe6,113 netCe6,120 netCe6,177 netCe6,251 netCe6,272 netCe6,287 netCe6,347 netCe6,378 unipChain,1 unipChain,7 uniprot,288 chan tRNAs,366 change est,125 intronEst,200 mrna,71 spMut,122 changed uniprot,1382 characteristic est,319 intronEst,394 mrna,265 check chainCaePb1,248 chainCaeRem2,248 chainCb3,248 chainCe6,246 checkbox uniprot,231 chiaromonte chainCaePb1,508 chainCaeRem2,508 chainCb3,508 chainCe6,506 chicken augustusGene,204 augustusGene,262 chmod uniprot,1921 choose augustusGene,171 est,275 est,314 intronEst,350 intronEst,389 mrna,221 mrna,260 uniprot,657 chosen est,337 intronEst,412 mrna,283 chr4 chainCaePb1,280 chainCaeRem2,280 chainCb3,280 chainCe6,278 chr6 spMut,423 uniprot,1820 chris uniprot,1954 chrom spMut,422 uniprot,1819 chromosome chainCaePb1,206 chainCaePb1,235 chainCaePb1,260 chainCaePb1,268 chainCaePb1,278 chainCaePb1,287 chainCaePb1,352 chainCaePb1,358 chainCaeRem2,206 chainCaeRem2,235 chainCaeRem2,260 chainCaeRem2,268 chainCaeRem2,278 chainCaeRem2,287 chainCaeRem2,352 chainCaeRem2,358 chainCb3,206 chainCb3,235 chainCb3,260 chainCb3,268 chainCb3,278 chainCb3,287 chainCb3,352 chainCb3,358 chainCe6,204 chainCe6,233 chainCe6,258 chainCe6,266 chainCe6,276 chainCe6,285 chainCe6,350 chainCe6,356 ctgPos2,67 gap,183 gold,60 netCaePb1,212 netCaePb1,227 netCaePb1,243 netCaeRem2,212 netCaeRem2,227 netCaeRem2,243 netCb3,212 netCb3,227 netCb3,243 netCe6,210 netCe6,225 netCe6,241 uniprot,1416 chromosome-based chainCaePb1,228 chainCaeRem2,228 chainCb3,228 chainCe6,226 chrun ctgPos2,68 gap,184 gold,61 circle rmsk,172 cite tRNAs,362 class rmsk,169 classes rmsk,121 clawson blastCe6SG,207 gc5Base,83 quality,109 cleaved uniprot,249 click gc5Base,56 netCaePb1,139 netCaePb1,153 netCaeRem2,139 netCaeRem2,153 netCb3,139 netCb3,153 netCe6,137 netCe6,151 quality,72 spMut,190 uniprot,229 uniprot,481 uniprot,1673 xenoRefGene,110 xenoRefGene,214 clicking uniprot,1633 cloned est,434 intronEst,509 closest augustusGene,241 cloverleaf tRNAs,312 cm xenoRefGene,333 code quality,104 spMut,377 spMut,391 uniprot,1546 uniprot,1775 uniprot,1789 coding simpleRepeat,38 uniprot,1102 uniprot,1133 xenoRefGene,212 codon mrna,321 mrna,346 xenoRefGene,138 xenoRefGene,145 xenoRefGene,160 xenoRefGene,190 codons xenoRefGene,165 xenoRefGene,172 coiled-coil uniprot,367 collection xenoRefGene,33 color chainCaePb1,256 chainCaeRem2,256 chainCb3,256 chainCe6,254 est,131 est,316 intronEst,206 intronEst,391 mrna,77 mrna,262 rmsk,177 xenoRefGene,58 xenoRefGene,169 coloration gold,127 colored chainCaePb1,231 chainCaeRem2,231 chainCb3,231 chainCe6,229 spMut,175 spMut,181 uniprot,160 uniprot,176 coloring chainCaePb1,247 chainCaeRem2,247 chainCb3,247 chainCe6,245 est,410 intronEst,485 mrna,322 mrna,349 xenoRefGene,139 xenoRefGene,146 xenoRefGene,184 colors xenoRefGene,81 xenoRefGene,161 combination est,278 intronEst,353 mrna,224 combined rmsk,202 command uniprot,1871 uniprot,1875 commands uniprot,1902 comment uniprot,260 uniprot,282 uniprot,531 uniprot,615 comments spMut,171 comparative chainCaePb1,13 chainCaeRem2,13 chainCb3,13 chainCe6,12 netCaePb1,13 netCaeRem2,13 netCb3,13 netCe6,12 compare mrna,331 xenoRefGene,155 comparison uniprot,1260 compiled spMut,373 uniprot,1771 complete spMut,292 completely uniprot,1464 xenoRefGene,137 complex chainCaePb1,125 chainCaeRem2,125 chainCb3,125 chainCe6,123 complexity rmsk,30 rmsk,153 components gold,146 composed uniprot,1396 compositional uniprot,399 comprising ctgPos2,40 ctgPos2,50 gold,33 gold,43 computational uniprot,51 concatenation gap,185 concerned spMut,25 condition spMut,59 conditional augustusGene,118 configuration chainCaePb1,222 chainCaeRem2,222 chainCb3,222 chainCe6,220 est,49 gc5Base,60 gc5Base,69 intronEst,127 mrna,30 netCaePb1,67 netCaeRem2,67 netCb3,67 netCe6,65 quality,75 quality,83 rmsk,109 spMut,109 uniprot,235 uniprot,449 uniprot,650 uniprot,1755 xenoRefGene,46 configured est,372 gc5Base,42 intronEst,447 mrna,318 quality,58 xenoRefGene,89 conflicts unipConflict,2 unipConflict,5 uniprot,373 connect uniprot,1677 considerable est,608 intronEst,683 considered intronEst,59 consistency uniprot,402 consortium spMut,464 uniprot,1986 constructed ctgPos2,45 gold,38 consult est,220 intronEst,295 mrna,166 spMut,63 contact uniprot,686 uniprot,1440 contain uniprot,1163 contained ctgPos2,103 gold,96 netCaePb1,381 netCaeRem2,381 netCb3,381 netCe6,379 contains blastCe6SG,18 est,245 gap,65 intronEst,320 mrna,191 xenoRefGene,142 contamination est,596 intronEst,93 intronEst,671 content augustusGene,71 gc5Base,31 conterio tRNAs,472 context gap,86 gap,154 contig gap,88 gap,157 gap,165 gap,169 gold,160 contig0 ctgPos2,87 gold,80 contigs ctgPos2,1 ctgPos2,3 ctgPos2,12 ctgPos2,49 gap,32 gap,79 gap,103 gold,42 control tRNAs,498 controls xenoRefGene,92 convenience uniprot,404 conventions chainCaePb1,220 chainCaeRem2,220 chainCb3,220 chainCe6,218 est,47 est,55 intronEst,125 intronEst,133 mrna,28 mrna,36 netCaePb1,65 netCaeRem2,65 netCb3,65 netCe6,63 rmsk,107 spMut,107 uniprot,447 xenoRefGene,44 xenoRefGene,52 converted chainCaePb1,328 chainCaeRem2,328 chainCb3,328 chainCe6,326 uniprot,1477 uniprot,1760 coordinates uniprot,29 uniprot,643 uniprot,1848 uniprot,1855 uniprot,1886 uniprot,1892 copies microsat,80 copy uniprot,419 correct uniprot,962 uniprot,1222 corresponds est,228 intronEst,303 mrna,174 covariance tRNAs,60 tRNAs,402 cove tRNAs,64 cove-predicted tRNAs,341 cover est,529 intronEst,604 coverage ctgPos2,34 gold,27 uniprot,1485 covered netCaePb1,304 netCaeRem2,304 netCb3,304 netCe6,302 created microsat,89 rmsk,13 spMut,450 uniprot,824 uniprot,1942 creates chainCaePb1,363 chainCaeRem2,363 chainCb3,363 chainCe6,361 credits augustusGene,247 blastCe6SG,144 chainCaePb1,421 chainCaeRem2,421 chainCb3,421 chainCe6,419 ctgPos2,114 est,693 gap,189 gc5Base,71 gold,161 intronEst,771 microsat,104 mrna,409 netCaePb1,405 netCaeRem2,405 netCb3,405 netCe6,403 quality,85 rmsk,284 simpleRepeat,66 spMut,446 tRNAs,328 uniprot,1938 xenoRefGene,280 criteria est,292 est,310 est,348 est,366 intronEst,367 intronEst,385 intronEst,423 intronEst,441 mrna,238 mrna,256 mrna,294 mrna,312 cruz chainCaePb1,478 chainCaeRem2,478 chainCb3,478 chainCe6,476 netCaePb1,420 netCaeRem2,420 netCb3,420 netCe6,418 culex augustusGene,220 curated spMut,98 uniprot,35 uniprot,110 uniprot,142 xenoRefGene,296 xenoRefGene,373 curators spMut,236 current est,163 intronEst,238 mrna,109 rmsk,216 uniprot,1296 uniprot,1575 uniprot,1692 uniprot,1712 cytoplamsic uniprot,518 cytoplasmic unipLocCytopl,1 unipLocCytopl,3 uniprot,276 uniprot,284 uniprot,569 cytosine gc5Base,24 d augustusGene,293 chainCaePb1,535 chainCaePb1,604 chainCaeRem2,535 chainCaeRem2,604 chainCb3,535 chainCb3,604 chainCe6,533 chainCe6,602 netCaePb1,473 netCaePb1,517 netCaeRem2,473 netCaeRem2,517 netCb3,473 netCb3,517 netCe6,471 netCe6,515 d23-6 est,736 intronEst,814 mrna,453 d501-4 xenoRefGene,391 d71-5 spMut,483 uniprot,2005 d756-63 xenoRefGene,357 d93-7 tRNAs,389 da est,716 intronEst,794 mrna,433 dark unipAliSwissprot,10 uniprot,162 uniprot,582 uniprot,587 xenoRefGene,75 darker intronEst,142 darkly est,69 mrna,50 data ctgPos2,136 est,703 gap,44 gap,136 gap,151 gap,211 gc5Base,73 gold,183 intronEst,781 microsat,47 mrna,420 rmsk,229 rmsk,246 spMut,95 spMut,309 spMut,313 spMut,324 spMut,348 spMut,440 tRNAs,360 uniprot,32 uniprot,45 uniprot,892 uniprot,895 uniprot,1683 uniprot,1705 uniprot,1709 uniprot,1724 uniprot,1837 uniprot,1980 xenoRefGene,36 xenoRefGene,290 database chainCaePb1,494 chainCaeRem2,494 chainCb3,494 chainCe6,492 est,734 intronEst,812 mrna,451 netCaePb1,450 netCaeRem2,450 netCb3,450 netCe6,448 quality,99 rmsk,316 spMut,44 spMut,93 spMut,481 spMut,509 tRNAs,110 tRNAs,372 tRNAs,387 uniprot,25 uniprot,821 uniprot,2003 uniprot,2031 xenoRefGene,355 xenoRefGene,376 xenoRefGene,389 databases est,583 est,710 intronEst,97 intronEst,658 intronEst,788 mrna,427 tRNAs,489 david chainCaePb1,488 chainCaeRem2,488 chainCb3,488 chainCe6,486 de augustusGene,303 default chainCaePb1,224 chainCaeRem2,224 chainCb3,224 chainCe6,222 uniprot,225 xenoRefGene,103 xenoRefGene,196 defined uniprot,305 uniprot,1387 degraded est,498 intronEst,573 degree est,593 intronEst,668 deletion chainCaePb1,107 chainCaePb1,540 chainCaeRem2,107 chainCaeRem2,540 chainCb3,107 chainCb3,540 chainCe6,105 chainCe6,538 netCaePb1,478 netCaeRem2,478 netCb3,478 netCe6,476 rmsk,190 deletions chainCaePb1,75 chainCaePb1,140 chainCaeRem2,75 chainCaeRem2,140 chainCb3,75 chainCb3,140 chainCe6,73 chainCe6,138 dense est,61 gold,108 intronEst,139 mrna,42 depending uniprot,442 uniprot,808 depicts gap,10 gold,112 deposited est,570 intronEst,645 deprecated uniprot,1044 derived netCaePb1,255 netCaeRem2,255 netCb3,255 netCe6,253 tRNAs,129 uniprot,830 described netCaePb1,262 netCaeRem2,262 netCb3,262 netCe6,260 rmsk,96 rmsk,309 spMut,152 spMut,224 uniprot,1524 describes augustusGene,226 description augustusGene,12 blastCe6SG,15 chainCaePb1,15 chainCaeRem2,15 chainCb3,15 chainCe6,14 ctgPos2,7 est,12 est,112 gap,7 gc5Base,11 gold,8 intronEst,13 intronEst,187 microsat,10 mrna,12 mrna,58 netCaePb1,15 netCaePb1,267 netCaeRem2,15 netCaeRem2,267 netCb3,15 netCb3,267 netCe6,14 netCe6,265 quality,11 rmsk,9 simpleRepeat,11 spMut,11 tRNAs,13 uniprot,11 uniprot,106 xenoRefGene,11 xenoRefGene,99 descriptions augustusGene,91 designed uniprot,1355 desired est,277 intronEst,352 mrna,223 destined uniprot,244 detailed augustusGene,90 netCaePb1,145 netCaePb1,164 netCaeRem2,145 netCaeRem2,164 netCb3,145 netCb3,164 netCe6,143 netCe6,162 rmsk,37 tRNAs,97 uniprot,692 details uniprot,499 uniprot,771 uniprot,1157 uniprot,1584 detected tRNAs,377 detection tRNAs,39 tRNAs,449 determining netCaePb1,169 netCaeRem2,169 netCb3,169 netCe6,167 developed chainCaePb1,424 chainCaePb1,454 chainCaePb1,470 chainCaeRem2,424 chainCaeRem2,454 chainCaeRem2,470 chainCb3,424 chainCb3,454 chainCb3,470 chainCe6,422 chainCe6,452 chainCe6,468 netCaePb1,413 netCaePb1,426 netCaeRem2,413 netCaeRem2,426 netCb3,413 netCb3,426 netCe6,411 netCe6,424 di-nucleotide microsat,3 microsat,32 diagnosis spMut,69 dieci tRNAs,476 diekhans augustusGene,288 spMut,290 spMut,458 uniprot,1540 uniprot,1957 diemand spMut,492 uniprot,2014 differ est,395 intronEst,470 uniprot,746 uniprot,1131 difference uniprot,1251 differences uniprot,374 uniprot,921 uniprot,1370 different augustusGene,39 augustusGene,85 augustusGene,96 augustusGene,144 augustusGene,155 augustusGene,179 augustusGene,193 gc5Base,50 netCaePb1,244 netCaeRem2,244 netCb3,244 netCe6,242 quality,66 rmsk,120 uniprot,634 direction est,81 est,99 intronEst,156 intronEst,174 directly uniprot,993 discarded chainCaePb1,412 chainCaeRem2,412 chainCb3,412 chainCe6,410 xenoRefGene,238 discover blastCe6SG,60 disease spMut,132 spMut,143 spMut,160 uniprot,545 uniprot,616 diseases simpleRepeat,54 disorders spMut,28 display chainCaePb1,198 chainCaePb1,219 chainCaePb1,262 chainCaePb1,492 chainCaeRem2,198 chainCaeRem2,219 chainCaeRem2,262 chainCaeRem2,492 chainCb3,198 chainCb3,219 chainCb3,262 chainCb3,492 chainCe6,196 chainCe6,217 chainCe6,260 chainCe6,490 est,46 est,54 est,62 est,127 est,154 est,184 est,318 est,342 est,358 est,374 est,384 intronEst,112 intronEst,124 intronEst,132 intronEst,140 intronEst,202 intronEst,229 intronEst,259 intronEst,393 intronEst,417 intronEst,433 intronEst,449 intronEst,459 mrna,27 mrna,35 mrna,43 mrna,73 mrna,100 mrna,130 mrna,264 mrna,288 mrna,304 mrna,320 netCaePb1,64 netCaePb1,70 netCaePb1,129 netCaePb1,158 netCaePb1,187 netCaePb1,448 netCaeRem2,64 netCaeRem2,70 netCaeRem2,129 netCaeRem2,158 netCaeRem2,187 netCaeRem2,448 netCb3,64 netCb3,70 netCb3,129 netCb3,158 netCb3,187 netCb3,448 netCe6,62 netCe6,68 netCe6,127 netCe6,156 netCe6,185 netCe6,446 quality,103 rmsk,106 rmsk,112 rmsk,182 spMut,106 uniprot,446 xenoRefGene,43 xenoRefGene,51 xenoRefGene,80 xenoRefGene,116 xenoRefGene,159 displayed chainCaePb1,417 chainCaeRem2,417 chainCb3,417 chainCe6,415 gc5Base,54 intronEst,767 netCaePb1,106 netCaePb1,203 netCaeRem2,106 netCaeRem2,203 netCb3,106 netCb3,203 netCe6,104 netCe6,201 quality,70 xenoRefGene,204 displays chainCaePb1,82 chainCaeRem2,82 chainCb3,82 chainCe6,80 ctgPos2,58 gold,51 microsat,13 rmsk,116 simpleRepeat,14 tRNAs,16 dissertation augustusGene,105 distant est,553 intronEst,628 distinguished gold,118 distributions augustusGene,83 disulf unipDisulfBond,1 uniprot,472 disulfide unipDisulfBond,4 uniprot,333 uniprot,335 diverged netCaePb1,404 netCaeRem2,404 netCb3,404 netCe6,402 divided uniprot,56 dj blastCe6SG,169 est,720 intronEst,798 mrna,437 dl est,724 intronEst,802 mrna,441 dna microsat,123 rmsk,23 rmsk,31 rmsk,145 rmsk,148 simpleRepeat,83 tRNAs,427 tRNAs,488 do tRNAs,152 tRNAs,305 uniprot,168 uniprot,1129 does tRNAs,113 tRNAs,135 domain unipLocExtra,4 domains unipDomain,1 unipDomain,3 unipLocCytopl,4 unipLocTransMemb,4 uniprot,255 uniprot,257 uniprot,266 uniprot,268 uniprot,277 uniprot,279 uniprot,323 uniprot,325 uniprot,331 uniprot,391 uniprot,514 uniprot,516 uniprot,519 uniprot,550 done augustusGene,265 augustusGene,281 double chainCaePb1,90 chainCaePb1,121 chainCaeRem2,90 chainCaeRem2,121 chainCb3,90 chainCb3,121 chainCe6,88 chainCe6,119 double-lined chainCaePb1,182 chainCaeRem2,182 chainCb3,182 chainCe6,180 double-sided chainCaePb1,64 chainCaeRem2,64 chainCb3,64 chainCe6,62 download spMut,344 uniprot,1744 uniprot,1983 downloaded spMut,341 spMut,379 uniprot,1741 uniprot,1777 downloading spMut,389 uniprot,1787 downloads rmsk,76 uniprot,1698 dr xenoRefGene,367 draft ctgPos2,20 ctgPos2,121 gap,196 gold,13 gold,168 drastically intronEst,99 drawn gap,55 draws spMut,282 uniprot,1532 drosophila augustusGene,213 due chainCaePb1,104 chainCaePb1,175 chainCaePb1,187 chainCaeRem2,104 chainCaeRem2,175 chainCaeRem2,187 chainCb3,104 chainCb3,175 chainCb3,187 chainCe6,102 chainCe6,173 chainCe6,185 uniprot,848 uniprot,919 uniprot,1368 duplicate uniprot,594 duplication chainCaePb1,539 chainCaeRem2,539 chainCb3,539 chainCe6,537 netCaePb1,477 netCaeRem2,477 netCb3,477 netCe6,475 durbin tRNAs,396 during gap,107 netCaePb1,309 netCaeRem2,309 netCb3,309 netCe6,307 dynamic chainCaePb1,314 chainCaePb1,376 chainCaeRem2,314 chainCaeRem2,376 chainCb3,314 chainCb3,376 chainCe6,312 chainCe6,374 e spMut,499 tRNAs,352 uniprot,2021 e.g chainCaePb1,279 chainCaeRem2,279 chainCb3,279 chainCe6,277 uniprot,398 uniprot,467 each blastCe6SG,71 chainCaePb1,216 chainCaeRem2,216 chainCb3,216 chainCe6,214 ctgPos2,82 est,217 gold,75 intronEst,292 mrna,163 quality,22 quality,30 uniprot,151 echo uniprot,1925 eddy tRNAs,65 tRNAs,394 tRNAs,442 edge uniprot,1182 uniprot,1451 educated tRNAs,255 effect est,568 intronEst,643 either chainCaePb1,87 chainCaeRem2,87 chainCb3,87 chainCe6,85 gap,34 uniprot,816 uniprot,1398 electronic rmsk,319 elegans blastCe6SG,4 blastCe6SG,31 blastCe6SG,44 blastCe6SG,53 chainCe6,2 chainCe6,5 chainCe6,21 chainCe6,55 chainCe6,109 chainCe6,295 chainCe6,349 netCe6,2 netCe6,5 netCe6,21 netCe6,47 element rmsk,198 elements rmsk,3 rmsk,127 rmsk,135 rmsk,140 rmsk,147 rmsk,323 tRNAs,302 eliminate est,641 intronEst,716 eliminating intronEst,105 em chainCaePb1,459 chainCaePb1,569 chainCaeRem2,459 chainCaeRem2,569 chainCb3,459 chainCb3,569 chainCe6,457 chainCe6,567 emerged est,538 intronEst,613 netCaePb1,315 netCaeRem2,315 netCb3,315 netCe6,313 encode tRNAs,171 encodes tRNAs,143 end est,488 est,506 est,516 est,557 intronEst,563 intronEst,581 intronEst,591 intronEst,632 spMut,426 uniprot,126 uniprot,210 uniprot,1823 ends intronEst,86 ensembl uniprot,731 uniprot,834 uniprot,865 enter chainCaePb1,273 chainCaeRem2,273 chainCb3,273 chainCe6,271 entered est,254 intronEst,329 mrna,200 entirely uniprot,1434 ermolaeva xenoRefGene,330 especially est,155 intronEst,230 mrna,101 est est,11 est,87 est,183 est,419 est,582 est,603 est,655 est,701 intronEst,12 intronEst,62 intronEst,96 intronEst,122 intronEst,162 intronEst,258 intronEst,494 intronEst,657 intronEst,678 intronEst,730 intronEst,779 mrna,11 ests est,3 est,6 est,23 est,29 est,193 est,287 est,302 est,343 est,361 est,458 est,503 est,514 est,616 est,643 intronEst,2 intronEst,5 intronEst,24 intronEst,40 intronEst,109 intronEst,115 intronEst,150 intronEst,268 intronEst,362 intronEst,377 intronEst,418 intronEst,436 intronEst,533 intronEst,578 intronEst,589 intronEst,691 intronEst,718 et xenoRefGene,340 etc uniprot,479 eukaryotes tRNAs,101 eukaryotic tRNAs,483 evaluate uniprot,1461 even est,577 est,584 intronEst,652 intronEst,659 uniprot,136 every netCaePb1,27 netCaeRem2,27 netCb3,27 netCe6,26 uniprot,1571 evidence intronEst,65 spMut,232 evolution chainCaePb1,536 chainCaeRem2,536 chainCb3,536 chainCe6,534 netCaePb1,474 netCaeRem2,474 netCb3,474 netCe6,472 ew blastCe6SG,167 exact tRNAs,264 uniprot,1622 uniprot,1747 example est,186 est,239 intronEst,261 intronEst,314 mrna,132 mrna,185 spMut,413 uniprot,1450 uniprot,1811 uniprot,1901 except uniprot,508 exclude est,134 est,328 est,334 intronEst,209 intronEst,403 intronEst,409 mrna,80 mrna,274 mrna,280 exe uniprot,1918 exist gold,132 netCaePb1,90 netCaeRem2,90 netCb3,90 netCe6,88 exon augustusGene,86 blastCe6SG,61 blastCe6SG,72 blastCe6SG,108 blastCe6SG,121 exons blastCe6SG,89 expansions simpleRepeat,48 expense intronEst,103 experimentally uniprot,304 explanation gc5Base,66 quality,80 explored spMut,316 uniprot,1716 expressed est,20 est,194 intronEst,21 intronEst,269 mrna,140 extend rmsk,267 extended blastCe6SG,124 extending blastCe6SG,110 extracellular unipLocExtra,1 unipLocExtra,3 uniprot,254 uniprot,262 uniprot,513 uniprot,566 f chainCaePb1,509 chainCaeRem2,509 chainCb3,509 chainCe6,507 tRNAs,473 xenoRefGene,327 facilitate uniprot,1852 factor est,231 intronEst,306 mrna,177 false tRNAs,87 famiglietti spMut,496 uniprot,2018 families uniprot,1395 faq augustusGene,45 rmsk,280 spMut,442 uniprot,1839 far uniprot,599 farrell xenoRefGene,332 feature chainCaePb1,202 chainCaeRem2,202 chainCb3,202 chainCe6,200 est,378 intronEst,453 mrna,324 uniprot,64 uniprot,524 uniprot,613 xenoRefGene,147 xenoRefGene,180 features spMut,407 tRNAs,185 tRNAs,218 tRNAs,238 tRNAs,276 uniprot,694 uniprot,1805 xenoRefGene,83 fed chainCaePb1,340 chainCaeRem2,340 chainCb3,340 chainCe6,338 feedback uniprot,1445 uniprot,1961 fewer tRNAs,91 ffer chainCaePb1,462 chainCaePb1,572 chainCaeRem2,462 chainCaeRem2,572 chainCb3,462 chainCb3,572 chainCe6,460 chainCe6,570 fichant tRNAs,32 tRNAs,417 field augustusGene,120 file spMut,263 spMut,337 spMut,349 uniprot,884 uniprot,1511 uniprot,1614 uniprot,1737 uniprot,1756 filenames uniprot,1748 uniprot,1894 files uniprot,1863 fill netCaePb1,339 netCaePb1,372 netCaeRem2,339 netCaeRem2,372 netCb3,339 netCb3,372 netCe6,337 netCe6,370 filled netCaePb1,99 netCaePb1,118 netCaePb1,321 netCaePb1,394 netCaeRem2,99 netCaeRem2,118 netCaeRem2,321 netCaeRem2,394 netCb3,99 netCb3,118 netCb3,321 netCb3,394 netCe6,97 netCe6,116 netCe6,319 netCe6,392 filter chainCaePb1,285 chainCaeRem2,285 chainCb3,285 chainCe6,283 est,119 est,168 est,181 est,190 est,237 est,267 est,291 est,309 est,347 est,365 intronEst,194 intronEst,243 intronEst,256 intronEst,265 intronEst,312 intronEst,342 intronEst,366 intronEst,384 intronEst,422 intronEst,440 mrna,65 mrna,114 mrna,127 mrna,136 mrna,183 mrna,213 mrna,237 mrna,255 mrna,293 mrna,311 uniprot,187 uniprot,664 filtered est,330 intronEst,405 mrna,276 uniprot,1480 uniprot,1499 filtering est,269 intronEst,344 mrna,215 uniprot,693 uniprot,912 uniprot,1154 filters tRNAs,55 final uniprot,1153 finally blastCe6SG,84 find chainCaePb1,385 chainCaeRem2,385 chainCb3,385 chainCe6,383 finder microsat,94 microsat,107 microsat,118 simpleRepeat,25 simpleRepeat,78 finding augustusGene,306 netCaePb1,38 netCaeRem2,38 netCb3,38 netCe6,37 finger uniprot,327 fingerprint gap,145 first blastCe6SG,37 netCaePb1,279 netCaeRem2,279 netCb3,279 netCe6,277 spMut,245 uniprot,70 fish augustusGene,201 fit netCaePb1,299 netCaeRem2,299 netCb3,299 netCe6,297 fix uniprot,851 flag rmsk,253 flags rmsk,255 fly augustusGene,214 fold tRNAs,308 following chainCaePb1,394 chainCaeRem2,394 chainCb3,394 chainCe6,392 ctgPos2,135 gap,67 gap,210 gold,182 tRNAs,364 follows est,52 intronEst,130 mrna,33 xenoRefGene,49 for augustusGene,34 augustusGene,52 augustusGene,68 augustusGene,80 augustusGene,175 augustusGene,184 augustusGene,192 augustusGene,232 augustusGene,253 augustusGene,260 augustusGene,274 blastCe6SG,154 chainCaePb1,215 chainCaePb1,579 chainCaeRem2,215 chainCaeRem2,579 chainCb3,215 chainCb3,579 chainCe6,213 chainCe6,577 est,56 est,114 est,185 est,216 est,238 est,400 est,411 est,451 gc5Base,64 intronEst,110 intronEst,134 intronEst,189 intronEst,260 intronEst,291 intronEst,313 intronEst,475 intronEst,486 intronEst,526 microsat,95 mrna,37 mrna,60 mrna,131 mrna,162 mrna,184 mrna,337 mrna,350 netCaePb1,26 netCaePb1,37 netCaePb1,42 netCaePb1,176 netCaeRem2,26 netCaeRem2,37 netCaeRem2,42 netCaeRem2,176 netCb3,26 netCb3,37 netCb3,42 netCb3,176 netCe6,25 netCe6,36 netCe6,41 netCe6,174 quality,78 rmsk,25 rmsk,259 rmsk,281 rmsk,293 simpleRepeat,30 simpleRepeat,56 spMut,17 spMut,68 spMut,71 spMut,183 spMut,326 spMut,350 spMut,384 spMut,388 spMut,412 spMut,436 spMut,443 spMut,512 tRNAs,100 tRNAs,230 tRNAs,447 uniprot,75 uniprot,78 uniprot,401 uniprot,405 uniprot,462 uniprot,497 uniprot,532 uniprot,549 uniprot,697 uniprot,739 uniprot,743 uniprot,770 uniprot,842 uniprot,846 uniprot,861 uniprot,886 uniprot,964 uniprot,997 uniprot,1017 uniprot,1023 uniprot,1057 uniprot,1070 uniprot,1097 uniprot,1119 uniprot,1211 uniprot,1238 uniprot,1320 uniprot,1393 uniprot,1427 uniprot,1627 uniprot,1644 uniprot,1651 uniprot,1661 uniprot,1726 uniprot,1782 uniprot,1786 uniprot,1810 uniprot,1833 uniprot,1840 uniprot,1869 uniprot,1977 uniprot,1982 uniprot,2034 xenoRefGene,20 xenoRefGene,53 xenoRefGene,175 form uniprot,1665 format chainCaePb1,331 chainCaeRem2,331 chainCb3,331 chainCe6,329 formats uniprot,885 uniprot,1865 forth netCaePb1,125 netCaeRem2,125 netCb3,125 netCe6,123 found augustusGene,100 mrna,384 spMut,396 uniprot,241 uniprot,1128 uniprot,1271 uniprot,1328 uniprot,1557 uniprot,1751 uniprot,1794 four netCaePb1,193 netCaeRem2,193 netCb3,193 netCe6,191 fragment gap,72 gap,127 gold,152 fragments est,42 gold,4 intronEst,53 free uniprot,1435 from augustusGene,19 blastCe6SG,24 blastCe6SG,41 chainCaePb1,137 chainCaePb1,303 chainCaePb1,441 chainCaePb1,484 chainCaeRem2,137 chainCaeRem2,303 chainCaeRem2,441 chainCaeRem2,484 chainCb3,137 chainCb3,303 chainCb3,441 chainCb3,484 chainCe6,135 chainCe6,301 chainCe6,439 chainCe6,482 ctgPos2,46 est,396 est,423 est,444 est,554 est,572 est,617 est,700 gap,133 gold,3 gold,39 intronEst,471 intronEst,498 intronEst,519 intronEst,629 intronEst,647 intronEst,692 intronEst,778 mrna,7 mrna,417 netCaePb1,55 netCaePb1,245 netCaePb1,256 netCaePb1,443 netCaeRem2,55 netCaeRem2,245 netCaeRem2,256 netCaeRem2,443 netCb3,55 netCb3,245 netCb3,256 netCb3,443 netCe6,54 netCe6,243 netCe6,254 netCe6,441 rmsk,86 spMut,99 spMut,259 spMut,342 spMut,374 spMut,456 tRNAs,130 uniprot,21 uniprot,36 uniprot,115 uniprot,198 uniprot,250 uniprot,557 uniprot,747 uniprot,831 uniprot,890 uniprot,915 uniprot,1507 uniprot,1696 uniprot,1742 uniprot,1772 uniprot,1844 uniprot,1953 uniprot,1962 xenoRefGene,27 xenoRefGene,167 xenoRefGene,287 full chainCaePb1,197 chainCaeRem2,197 chainCb3,197 chainCe6,195 netCaePb1,69 netCaeRem2,69 netCb3,69 netCe6,67 rmsk,111 spMut,184 uniprot,486 uniprot,528 uniprot,540 function tRNAs,154 functional tRNAs,145 tRNAs,172 tRNAs,221 furthermore augustusGene,64 g gc5Base,20 microsat,115 simpleRepeat,75 tRNAs,477 g-31-125100-114 chainCaePb1,402 chainCaeRem2,402 chainCb3,402 chainCe6,400 ga tRNAs,418 gambiae augustusGene,219 gap blastCe6SG,96 blastCe6SG,103 chainCaePb1,36 chainCaePb1,46 chainCaePb1,149 chainCaeRem2,36 chainCaeRem2,46 chainCaeRem2,149 chainCb3,36 chainCb3,46 chainCb3,149 chainCe6,34 chainCe6,44 chainCe6,147 ctgPos2,78 gap,1 gap,2 gap,38 gap,49 gap,62 gap,128 gap,159 gold,71 netCaePb1,162 netCaePb1,174 netCaePb1,197 netCaePb1,215 netCaePb1,230 netCaePb1,247 netCaePb1,323 netCaeRem2,162 netCaeRem2,174 netCaeRem2,197 netCaeRem2,215 netCaeRem2,230 netCaeRem2,247 netCaeRem2,323 netCb3,162 netCb3,174 netCb3,197 netCb3,215 netCb3,230 netCb3,247 netCb3,323 netCe6,160 netCe6,172 netCe6,195 netCe6,213 netCe6,228 netCe6,245 netCe6,321 gapless chainCaePb1,369 chainCaeRem2,369 chainCb3,369 chainCe6,367 gaps chainCaePb1,42 chainCaePb1,53 chainCaePb1,66 chainCaePb1,100 chainCaePb1,126 chainCaePb1,172 chainCaePb1,183 chainCaeRem2,42 chainCaeRem2,53 chainCaeRem2,66 chainCaeRem2,100 chainCaeRem2,126 chainCaeRem2,172 chainCaeRem2,183 chainCb3,42 chainCb3,53 chainCb3,66 chainCb3,100 chainCb3,126 chainCb3,172 chainCb3,183 chainCe6,40 chainCe6,51 chainCe6,64 chainCe6,98 chainCe6,124 chainCe6,170 chainCe6,181 gap,11 gap,15 gap,71 gap,73 gap,138 gold,131 netCaePb1,89 netCaePb1,111 netCaePb1,138 netCaePb1,378 netCaePb1,384 netCaeRem2,89 netCaeRem2,111 netCaeRem2,138 netCaeRem2,378 netCaeRem2,384 netCb3,89 netCb3,111 netCb3,138 netCb3,378 netCb3,384 netCe6,87 netCe6,109 netCe6,136 netCe6,376 netCe6,382 gary microsat,111 simpleRepeat,71 gasteiger spMut,498 uniprot,2020 gattiker spMut,494 uniprot,2016 gbdb spMut,417 uniprot,1815 gc gc5Base,1 gc5Base,3 gc5Base,13 gc5Base,30 genbank est,25 est,618 est,725 intronEst,26 intronEst,693 intronEst,803 mrna,8 mrna,23 mrna,355 mrna,442 uniprot,376 gencode uniprot,730 gene augustusGene,5 augustusGene,10 augustusGene,40 augustusGene,112 augustusGene,157 augustusGene,163 augustusGene,305 augustusGene,320 blastCe6SG,13 blastCe6SG,27 tRNAs,11 tRNAs,141 unipAliSwissprot,20 unipAliTrembl,12 unipChain,10 unipConflict,8 unipDisulfBond,8 unipDomain,6 unipInterest,8 unipLocCytopl,7 unipLocExtra,7 unipLocSignal,8 unipLocTransMemb,7 unipModif,9 unipMut,8 unipOther,8 unipRepeat,6 unipStruct,10 uniprot,9 uniprot,732 uniprot,1025 uniprot,1050 uniprot,1059 uniprot,1080 uniprot,1281 uniprot,1394 xenoRefGene,9 xenoRefGene,54 xenoRefGene,108 xenoRefGene,123 xenoRefGene,128 xenoRefGene,156 xenoRefGene,185 gene-rich gc5Base,36 genedx uniprot,1973 general est,500 intronEst,575 generally rmsk,72 uniprot,248 generate est,611 intronEst,686 rmsk,227 rmsk,302 generated chainCaePb1,500 chainCaeRem2,500 chainCb3,500 chainCe6,498 rmsk,248 xenoRefGene,291 generating augustusGene,189 genes augustusGene,8 augustusGene,44 blastCe6SG,11 blastCe6SG,46 est,45 intronEst,56 simpleRepeat,41 tRNAs,2 tRNAs,5 tRNAs,9 tRNAs,18 tRNAs,174 tRNAs,244 tRNAs,286 tRNAs,304 tRNAs,376 tRNAs,424 tRNAs,453 tRNAs,485 unipAliSwissprot,18 unipAliTrembl,10 unipChain,8 unipConflict,6 unipDisulfBond,6 unipDomain,4 unipInterest,6 unipLocCytopl,5 unipLocExtra,5 unipLocSignal,6 unipLocTransMemb,5 unipModif,7 unipMut,6 unipOther,6 unipRepeat,4 unipStruct,8 uniprot,7 uniprot,1300 xenoRefGene,6 xenoRefGene,7 xenoRefGene,19 xenoRefGene,194 xenoRefGene,202 xenoRefGene,213 genet rmsk,325 genetic rmsk,88 spMut,27 spMut,58 genetics spMut,30 genome augustusGene,31 blastCe6SG,54 chainCaePb1,33 chainCaePb1,167 chainCaePb1,450 chainCaePb1,611 chainCaeRem2,33 chainCaeRem2,167 chainCaeRem2,450 chainCaeRem2,611 chainCb3,33 chainCb3,167 chainCb3,450 chainCb3,611 chainCe6,31 chainCe6,165 chainCe6,448 chainCe6,609 ctgPos2,26 ctgPos2,28 est,28 est,623 est,748 gap,77 gap,110 gold,19 gold,21 gold,158 intronEst,29 intronEst,39 intronEst,698 intronEst,826 mrna,26 mrna,363 mrna,465 netCaePb1,33 netCaePb1,44 netCaePb1,277 netCaePb1,524 netCaeRem2,33 netCaeRem2,44 netCaeRem2,277 netCaeRem2,524 netCb3,33 netCb3,44 netCb3,277 netCb3,524 netCe6,32 netCe6,43 netCe6,275 netCe6,522 spMut,42 spMut,251 spMut,271 spMut,330 spMut,361 unipAliSwissprot,9 unipAliTrembl,9 uniprot,88 uniprot,103 uniprot,120 uniprot,203 uniprot,216 uniprot,609 uniprot,642 uniprot,717 uniprot,749 uniprot,803 uniprot,811 uniprot,910 uniprot,1141 uniprot,1377 uniprot,1494 uniprot,1520 uniprot,1543 uniprot,1730 uniprot,1847 uniprot,1858 uniprot,1891 xenoRefGene,226 xenoRefGene,309 genome.bed uniprot,1935 uniprot,1937 genomes chainCaePb1,308 chainCaePb1,548 chainCaePb1,581 chainCaeRem2,308 chainCaeRem2,548 chainCaeRem2,581 chainCb3,308 chainCb3,548 chainCb3,581 chainCe6,306 chainCe6,546 chainCe6,579 netCaePb1,486 netCaeRem2,486 netCb3,486 netCe6,484 uniprot,863 uniprot,941 xenoRefGene,378 genomic chainCaePb1,516 chainCaeRem2,516 chainCb3,516 chainCe6,514 est,91 est,398 est,578 est,689 intronEst,166 intronEst,473 intronEst,653 intronEst,764 mrna,335 mrna,405 netCaePb1,181 netCaeRem2,181 netCb3,181 netCe6,179 spMut,80 spMut,110 tRNAs,108 tRNAs,379 tRNAs,426 tRNAs,455 tRNAs,487 uniprot,28 uniprot,450 xenoRefGene,164 xenoRefGene,276 genomics chainCaePb1,14 chainCaeRem2,14 chainCb3,14 chainCe6,13 netCaePb1,14 netCaeRem2,14 netCb3,14 netCe6,13 genuine intronEst,107 gertz chainCaePb1,458 chainCaePb1,568 chainCaeRem2,458 chainCaeRem2,568 chainCb3,458 chainCb3,568 chainCe6,456 chainCe6,566 gigabases tRNAs,96 giri rmsk,92 rmsk,292 gish blastCe6SG,162 github uniprot,1559 given spMut,125 spMut,410 uniprot,741 uniprot,1235 uniprot,1240 uniprot,1808 glyco uniprot,469 glycosylation uniprot,341 uniprot,584 go est,406 intronEst,481 mrna,343 uniprot,1412 xenoRefGene,181 gold gold,124 gold,141 goldenpath uniprot,1907 gr xenoRefGene,323 graph gc5Base,59 gc5Base,78 quality,74 graphical netCaePb1,128 netCaeRem2,128 netCb3,128 netCe6,126 quality,102 rmsk,181 green spMut,176 uniprot,588 uniprot,593 grey tRNAs,206 group augustusGene,198 augustusGene,235 chainCaePb1,361 chainCaeRem2,361 chainCb3,361 chainCe6,359 uniprot,430 groups augustusGene,194 gsc ctgPos2,132 gap,207 gold,179 gt intronEst,84 tRNAs,165 uniprot,907 uniprot,909 uniprot,1930 gtrnadb tRNAs,111 tRNAs,332 tRNAs,370 guanine gc5Base,21 guess tRNAs,256 guides tRNAs,261 h spMut,491 uniprot,2013 haeussler spMut,453 uniprot,1945 half ctgPos2,94 gold,87 handful uniprot,1180 haplotype uniprot,852 hardison chainCaePb1,443 chainCaePb1,601 chainCaeRem2,443 chainCaeRem2,601 chainCb3,443 chainCb3,601 chainCe6,441 chainCe6,599 netCaePb1,445 netCaePb1,514 netCaeRem2,445 netCaeRem2,514 netCb3,445 netCb3,514 netCe6,443 netCe6,512 hart xenoRefGene,334 has ctgPos2,29 est,117 gold,22 intronEst,83 intronEst,192 mrna,63 rmsk,212 spMut,96 uniprot,33 uniprot,46 uniprot,154 uniprot,606 uniprot,1195 uniprot,1232 uniprot,1381 xenoRefGene,68 haussler augustusGene,292 chainCaePb1,489 chainCaePb1,534 chainCaePb1,603 chainCaeRem2,489 chainCaeRem2,534 chainCaeRem2,603 chainCb3,489 chainCb3,534 chainCb3,603 chainCe6,487 chainCe6,532 chainCe6,601 netCaePb1,472 netCaePb1,516 netCaeRem2,472 netCaeRem2,516 netCb3,472 netCb3,516 netCe6,470 netCe6,514 have chainCaePb1,291 chainCaeRem2,291 chainCb3,291 chainCe6,289 intronEst,7 rmsk,69 tRNAs,181 tRNAs,214 uniprot,170 uniprot,302 uniprot,942 uniprot,1000 uniprot,1042 uniprot,1444 having est,662 est,671 intronEst,737 intronEst,746 mrna,378 mrna,387 xenoRefGene,249 xenoRefGene,258 heavily spMut,283 uniprot,1533 height quality,28 heights quality,49 helices uniprot,366 help gc5Base,61 quality,76 helpful est,145 intronEst,220 mrna,91 here spMut,397 uniprot,1795 hg spMut,306 hg19 uniprot,847 uniprot,860 hg38 uniprot,700 uniprot,843 uniprot,1177 uniprot,1367 uniprot,1909 hgdownload.soe.ucsc.edu spMut,416 uniprot,1814 uniprot,1906 uniprot,1916 hiatt xenoRefGene,324 hidden augustusGene,324 uniprot,182 uniprot,223 hide uniprot,659 uniprot,667 xenoRefGene,192 hierarchy netCaePb1,314 netCaeRem2,314 netCb3,314 netCe6,312 high gc5Base,29 higher netCaePb1,346 netCaeRem2,346 netCb3,346 netCe6,344 rmsk,200 higher-level netCaePb1,363 netCaeRem2,363 netCb3,363 netCe6,361 higher-scoring netCaePb1,307 netCaePb1,326 netCaeRem2,307 netCaeRem2,326 netCb3,307 netCb3,326 netCe6,305 netCe6,324 highest est,664 intronEst,739 mrna,380 uniprot,948 uniprot,1113 xenoRefGene,251 highest-scoring netCaePb1,80 netCaePb1,273 netCaeRem2,80 netCaeRem2,273 netCb3,80 netCb3,273 netCe6,78 netCe6,271 highlight est,325 gc5Base,49 intronEst,400 mrna,271 quality,65 highlighted est,295 est,313 intronEst,370 intronEst,388 mrna,241 mrna,259 uniprot,580 highly microsat,40 tRNAs,69 hinrichs chainCaePb1,530 chainCaeRem2,530 chainCb3,530 chainCe6,528 netCaePb1,468 netCaeRem2,468 netCb3,468 netCe6,466 hiram blastCe6SG,206 gc5Base,82 quality,108 honeybee1 augustusGene,217 hou chainCaePb1,431 chainCaeRem2,431 chainCb3,431 chainCe6,429 netCaePb1,433 netCaeRem2,433 netCb3,433 netCe6,431 how netCaePb1,374 netCaePb1,391 netCaeRem2,374 netCaeRem2,391 netCb3,374 netCb3,391 netCe6,372 netCe6,389 http spMut,415 uniprot,1813 https uniprot,1905 uniprot,1915 hub uniprot,711 uniprot,1672 uniprot,1679 hubley rmsk,290 hum spMut,521 uniprot,2043 human augustusGene,205 augustusGene,210 augustusGene,276 chainCaePb1,547 chainCaeRem2,547 chainCb3,547 chainCe6,545 netCaePb1,485 netCaeRem2,485 netCb3,485 netCe6,483 spMut,518 uniprot,699 uniprot,940 uniprot,2040 human-mouse chainCaePb1,607 chainCaeRem2,607 chainCb3,607 chainCe6,605 netCaePb1,520 netCaeRem2,520 netCb3,520 netCe6,518 hybridizes est,468 intronEst,543 i est,718 intronEst,796 mrna,435 i.e intronEst,72 tRNAs,148 id uniprot,1026 uniprot,1051 uniprot,1060 uniprot,1282 identical uniprot,1106 uniprot,1144 uniprot,1147 identification tRNAs,480 identified est,668 intronEst,743 tRNAs,6 xenoRefGene,255 identifying tRNAs,421 identity est,666 est,674 est,686 intronEst,741 intronEst,749 intronEst,761 microsat,71 mrna,382 mrna,390 mrna,402 xenoRefGene,253 xenoRefGene,261 xenoRefGene,273 ids uniprot,1292 if est,268 est,280 est,296 est,332 est,349 gap,24 intronEst,343 intronEst,355 intronEst,371 intronEst,407 intronEst,424 mrna,214 mrna,226 mrna,242 mrna,278 mrna,295 spMut,128 spMut,139 uniprot,602 uniprot,688 uniprot,1030 uniprot,1077 uniprot,1230 uniprot,1261 uniprot,1323 uniprot,1442 xenoRefGene,205 ignored uniprot,1426 ii215-25 augustusGene,338 images tRNAs,319 imperfect simpleRepeat,19 important uniprot,900 improve augustusGene,302 improved tRNAs,448 in augustusGene,101 chainCaePb1,54 chainCaePb1,76 chainCaePb1,108 chainCaePb1,116 chainCaePb1,131 chainCaePb1,150 chainCaePb1,153 chainCaePb1,193 chainCaePb1,210 chainCaePb1,239 chainCaePb1,269 chainCaePb1,281 chainCaePb1,323 chainCaePb1,418 chainCaePb1,448 chainCaePb1,543 chainCaeRem2,54 chainCaeRem2,76 chainCaeRem2,108 chainCaeRem2,116 chainCaeRem2,131 chainCaeRem2,150 chainCaeRem2,153 chainCaeRem2,193 chainCaeRem2,210 chainCaeRem2,239 chainCaeRem2,269 chainCaeRem2,281 chainCaeRem2,323 chainCaeRem2,418 chainCaeRem2,448 chainCaeRem2,543 chainCb3,54 chainCb3,76 chainCb3,108 chainCb3,116 chainCb3,131 chainCb3,150 chainCb3,153 chainCb3,193 chainCb3,210 chainCb3,239 chainCb3,269 chainCb3,281 chainCb3,323 chainCb3,418 chainCb3,448 chainCb3,543 chainCe6,52 chainCe6,74 chainCe6,106 chainCe6,114 chainCe6,129 chainCe6,148 chainCe6,151 chainCe6,191 chainCe6,208 chainCe6,237 chainCe6,267 chainCe6,279 chainCe6,321 chainCe6,416 chainCe6,446 chainCe6,541 ctgPos2,18 ctgPos2,104 est,24 est,37 est,60 est,151 est,172 est,195 est,205 est,223 est,265 est,387 est,499 est,547 est,657 gap,12 gap,21 gap,84 gap,124 gap,152 gap,177 gc5Base,5 gc5Base,26 gc5Base,43 gold,97 gold,107 intronEst,25 intronEst,48 intronEst,80 intronEst,94 intronEst,138 intronEst,226 intronEst,247 intronEst,270 intronEst,280 intronEst,298 intronEst,340 intronEst,462 intronEst,574 intronEst,622 intronEst,732 intronEst,768 microsat,42 microsat,49 mrna,22 mrna,41 mrna,97 mrna,118 mrna,141 mrna,151 mrna,169 mrna,211 mrna,373 netCaePb1,51 netCaePb1,68 netCaePb1,86 netCaePb1,91 netCaePb1,100 netCaePb1,112 netCaePb1,126 netCaePb1,168 netCaePb1,185 netCaePb1,216 netCaePb1,234 netCaePb1,248 netCaePb1,275 netCaePb1,316 netCaePb1,324 netCaePb1,340 netCaePb1,373 netCaePb1,385 netCaePb1,481 netCaeRem2,51 netCaeRem2,68 netCaeRem2,86 netCaeRem2,91 netCaeRem2,100 netCaeRem2,112 netCaeRem2,126 netCaeRem2,168 netCaeRem2,185 netCaeRem2,216 netCaeRem2,234 netCaeRem2,248 netCaeRem2,275 netCaeRem2,316 netCaeRem2,324 netCaeRem2,340 netCaeRem2,373 netCaeRem2,385 netCaeRem2,481 netCb3,51 netCb3,68 netCb3,86 netCb3,91 netCb3,100 netCb3,112 netCb3,126 netCb3,168 netCb3,185 netCb3,216 netCb3,234 netCb3,248 netCb3,275 netCb3,316 netCb3,324 netCb3,340 netCb3,373 netCb3,385 netCb3,481 netCe6,50 netCe6,66 netCe6,84 netCe6,89 netCe6,98 netCe6,110 netCe6,124 netCe6,166 netCe6,183 netCe6,214 netCe6,232 netCe6,246 netCe6,273 netCe6,314 netCe6,322 netCe6,338 netCe6,371 netCe6,383 netCe6,479 quality,24 quality,59 rmsk,45 rmsk,63 rmsk,97 rmsk,101 rmsk,110 rmsk,179 rmsk,276 rmsk,310 spMut,36 spMut,89 spMut,161 spMut,220 spMut,304 spMut,334 tRNAs,155 tRNAs,158 tRNAs,194 tRNAs,203 tRNAs,222 tRNAs,240 tRNAs,249 tRNAs,378 tRNAs,425 tRNAs,454 tRNAs,486 uniprot,67 uniprot,148 uniprot,161 uniprot,177 uniprot,242 uniprot,291 uniprot,313 uniprot,427 uniprot,505 uniprot,509 uniprot,570 uniprot,581 uniprot,586 uniprot,591 uniprot,737 uniprot,755 uniprot,854 uniprot,870 uniprot,882 uniprot,1066 uniprot,1132 uniprot,1151 uniprot,1171 uniprot,1190 uniprot,1199 uniprot,1252 uniprot,1258 uniprot,1272 uniprot,1466 uniprot,1637 uniprot,1663 uniprot,1734 uniprot,1752 uniprot,1849 uniprot,1864 xenoRefGene,244 include est,133 est,327 est,351 intronEst,208 intronEst,402 intronEst,426 mrna,79 mrna,273 mrna,297 rmsk,130 rmsk,143 included augustusGene,160 blastCe6SG,120 blastCe6SG,143 includes rmsk,168 uniprot,1587 including est,7 intronEst,116 rmsk,159 uniprot,1700 incorrect uniprot,1361 indels microsat,74 indicate chainCaePb1,99 chainCaePb1,204 chainCaeRem2,99 chainCaeRem2,204 chainCb3,99 chainCb3,204 chainCe6,97 chainCe6,202 est,71 mrna,52 tRNAs,137 tRNAs,187 indicates est,79 intronEst,144 intronEst,154 quality,35 xenoRefGene,60 individual chainCaePb1,201 chainCaeRem2,201 chainCb3,201 chainCe6,199 netCaePb1,183 netCaeRem2,183 netCb3,183 netCe6,181 spMut,356 information augustusGene,36 blastCe6SG,156 est,78 est,402 gc5Base,55 intronEst,153 intronEst,477 microsat,97 mrna,339 netCaePb1,146 netCaePb1,159 netCaePb1,165 netCaePb1,341 netCaeRem2,146 netCaeRem2,159 netCaeRem2,165 netCaeRem2,341 netCb3,146 netCb3,159 netCb3,165 netCb3,341 netCe6,144 netCe6,157 netCe6,163 netCe6,339 quality,71 rmsk,89 rmsk,283 simpleRepeat,58 spMut,52 spMut,185 spMut,445 spMut,516 uniprot,678 uniprot,1842 uniprot,2038 xenoRefGene,177 initial tRNAs,47 initiate rmsk,275 initio augustusGene,4 augustusGene,17 input uniprot,1952 inserted chainCaePb1,293 chainCaeRem2,293 chainCb3,293 chainCe6,291 netCaePb1,397 netCaeRem2,397 netCb3,397 netCe6,395 insertion chainCaePb1,115 chainCaeRem2,115 chainCb3,115 chainCe6,113 rmsk,193 inside uniprot,560 inspected tRNAs,228 inspection uniprot,1653 instead gap,148 xenoRefGene,120 institute rmsk,91 instructions spMut,387 uniprot,1785 integrated tRNAs,27 integrator spMut,325 uniprot,1725 intended spMut,16 interactions uniprot,316 interactively spMut,317 uniprot,1717 interest unipInterest,1 unipInterest,5 uniprot,299 international est,707 intronEst,785 mrna,424 internet rmsk,245 interspersed rmsk,26 rmsk,125 rmsk,133 into chainCaePb1,329 chainCaePb1,341 chainCaePb1,359 chainCaeRem2,329 chainCaeRem2,341 chainCaeRem2,359 chainCb3,329 chainCb3,341 chainCb3,359 chainCe6,327 chainCe6,339 chainCe6,357 est,255 est,428 est,435 est,580 intronEst,330 intronEst,503 intronEst,510 intronEst,655 mrna,201 netCaePb1,300 netCaeRem2,300 netCb3,300 netCe6,298 tRNAs,309 uniprot,57 intron augustusGene,88 augustusGene,330 est,630 intronEst,71 intronEst,705 introns est,647 intronEst,722 inv netCaePb1,221 netCaeRem2,221 netCb3,221 netCe6,219 inversions chainCaePb1,72 chainCaePb1,138 chainCaeRem2,72 chainCaeRem2,138 chainCb3,72 chainCb3,138 chainCe6,70 chainCe6,136 inverted netCaePb1,359 netCaeRem2,359 netCb3,359 netCe6,357 involve chainCaePb1,128 chainCaeRem2,128 chainCb3,128 chainCe6,126 involved tRNAs,193 is blastCe6SG,146 ctgPos2,88 ctgPos2,102 est,284 est,300 est,336 est,353 est,421 est,433 est,442 est,462 est,591 est,635 gap,39 gap,46 gap,54 gap,89 gap,99 gc5Base,32 gold,81 gold,95 intronEst,75 intronEst,98 intronEst,359 intronEst,375 intronEst,411 intronEst,428 intronEst,496 intronEst,508 intronEst,517 intronEst,537 intronEst,666 intronEst,710 microsat,88 mrna,230 mrna,246 mrna,282 mrna,299 netCaePb1,35 netCaePb1,54 netCaePb1,166 netCaeRem2,35 netCaeRem2,54 netCaeRem2,166 netCb3,35 netCb3,54 netCb3,166 netCe6,34 netCe6,53 netCe6,164 rmsk,95 rmsk,308 simpleRepeat,28 spMut,15 spMut,45 spMut,137 spMut,141 spMut,151 spMut,294 spMut,302 spMut,332 spMut,353 tRNAs,25 tRNAs,125 uniprot,159 uniprot,222 uniprot,417 uniprot,626 uniprot,707 uniprot,839 uniprot,911 uniprot,958 uniprot,972 uniprot,1052 uniprot,1081 uniprot,1209 uniprot,1245 uniprot,1256 uniprot,1264 uniprot,1283 uniprot,1334 uniprot,1390 uniprot,1564 uniprot,1578 uniprot,1603 uniprot,1630 uniprot,1732 isoform unipAliSwissprot,13 uniprot,157 uniprot,186 uniprot,671 isoforms unipAliSwissprot,17 uniprot,145 uniprot,164 isolated est,422 intronEst,497 isotype tRNAs,248 issue est,735 intronEst,813 mrna,452 spMut,482 tRNAs,388 uniprot,2004 xenoRefGene,356 xenoRefGene,390 it chainCaePb1,49 chainCaeRem2,49 chainCb3,49 chainCe6,47 est,93 est,107 est,484 gap,45 intronEst,168 intronEst,182 intronEst,559 netCaePb1,34 netCaePb1,220 netCaePb1,232 netCaeRem2,34 netCaeRem2,220 netCaeRem2,232 netCb3,34 netCb3,220 netCb3,232 netCe6,33 netCe6,218 netCe6,230 uniprot,228 uniprot,625 uniprot,1586 item xenoRefGene,77 items est,65 est,138 est,148 est,331 intronEst,213 intronEst,223 intronEst,406 mrna,46 mrna,84 mrna,94 mrna,277 netCaePb1,184 netCaeRem2,184 netCb3,184 netCe6,182 xenoRefGene,104 its uniprot,230 uniprot,762 uniprot,1316 uniprot,1348 itself uniprot,715 j blastCe6SG,175 est,722 intronEst,800 mrna,439 rmsk,99 rmsk,312 tRNAs,429 xenoRefGene,335 jan chainCaePb1,6 chainCaePb1,24 chainCaePb1,584 chainCaePb1,614 chainCaeRem2,584 chainCaeRem2,614 chainCb3,6 chainCb3,24 chainCb3,584 chainCb3,614 chainCe6,582 chainCe6,612 ctgPos2,116 est,731 gap,191 gold,163 intronEst,809 microsat,129 mrna,448 netCaePb1,6 netCaePb1,57 netCaePb1,527 netCaeRem2,527 netCb3,6 netCb3,57 netCb3,527 netCe6,525 simpleRepeat,89 spMut,479 tRNAs,385 uniprot,2001 xenoRefGene,353 xenoRefGene,386 jim blastCe6SG,188 blastCe6SG,201 chainCaePb1,480 chainCaePb1,505 chainCaeRem2,480 chainCaeRem2,505 chainCb3,480 chainCb3,505 chainCe6,478 chainCe6,503 netCaePb1,422 netCaePb1,461 netCaeRem2,422 netCaeRem2,461 netCb3,422 netCb3,461 netCe6,420 netCe6,459 joined chainCaePb1,84 chainCaeRem2,84 chainCb3,84 chainCe6,82 journal rmsk,320 jun tRNAs,408 jurka rmsk,98 rmsk,311 k augustusGene,268 karsch-mizrachi est,717 intronEst,795 mrna,434 kd xenoRefGene,321 xenoRefGene,363 kd-tree chainCaePb1,365 chainCaeRem2,365 chainCb3,365 chainCe6,363 kd-trees chainCaePb1,383 chainCaeRem2,383 chainCb3,383 chainCe6,381 keep uniprot,1486 kent blastCe6SG,189 blastCe6SG,202 chainCaePb1,481 chainCaePb1,506 chainCaePb1,526 chainCaePb1,593 chainCaeRem2,481 chainCaeRem2,506 chainCaeRem2,526 chainCaeRem2,593 chainCb3,481 chainCb3,506 chainCb3,526 chainCb3,593 chainCe6,479 chainCe6,504 chainCe6,524 chainCe6,591 est,741 intronEst,819 mrna,458 netCaePb1,423 netCaePb1,462 netCaePb1,464 netCaePb1,506 netCaeRem2,423 netCaeRem2,462 netCaeRem2,464 netCaeRem2,506 netCb3,423 netCb3,462 netCb3,464 netCb3,506 netCe6,421 netCe6,460 netCe6,462 netCe6,504 spMut,298 xenoRefGene,303 kept est,692 mrna,408 xenoRefGene,279 km xenoRefGene,339 known spMut,129 xenoRefGene,15 lab augustusGene,252 tRNAs,338 label xenoRefGene,101 xenoRefGene,113 xenoRefGene,136 labeled spMut,117 uniprot,457 xenoRefGene,106 labeling est,376 intronEst,451 labels xenoRefGene,78 landrum xenoRefGene,336 large quality,46 largely chainCaePb1,103 chainCaeRem2,103 chainCb3,103 chainCe6,101 larger intronEst,146 largest ctgPos2,85 gold,78 netCaePb1,79 netCaeRem2,79 netCb3,79 netCe6,77 lavtopsl chainCaePb1,334 chainCaeRem2,334 chainCb3,334 chainCe6,332 least blastCe6SG,133 ctgPos2,109 est,683 gold,102 intronEst,68 intronEst,77 intronEst,758 microsat,29 microsat,78 mrna,399 xenoRefGene,270 lee uniprot,1955 length augustusGene,82 est,38 est,631 intronEst,49 intronEst,81 intronEst,706 less uniprot,680 xenoRefGene,234 level est,675 intronEst,91 intronEst,750 mrna,391 netCaePb1,74 netCaePb1,108 netCaePb1,113 netCaePb1,120 netCaePb1,178 netCaePb1,205 netCaePb1,218 netCaePb1,250 netCaeRem2,74 netCaeRem2,108 netCaeRem2,113 netCaeRem2,120 netCaeRem2,178 netCaeRem2,205 netCaeRem2,218 netCaeRem2,250 netCb3,74 netCb3,108 netCb3,113 netCb3,120 netCb3,178 netCb3,205 netCb3,218 netCb3,250 netCe6,72 netCe6,106 netCe6,111 netCe6,118 netCe6,176 netCe6,203 netCe6,216 netCe6,248 rmsk,175 xenoRefGene,62 xenoRefGene,262 libraries est,528 intronEst,603 rmsk,224 rmsk,299 library rmsk,83 lifted spMut,249 uniprot,1492 lifting uniprot,1843 liftover uniprot,887 uniprot,1878 uniprot,1897 uniprot,1920 uniprot,1924 uniprot,1932 light unipAliSwissprot,14 uniprot,506 uniprot,592 xenoRefGene,71 light-blue uniprot,178 lighter rmsk,207 like uniprot,1541 likely augustusGene,111 microsat,17 tRNAs,126 tRNAs,169 line gap,53 netCaePb1,156 netCaeRem2,156 netCb3,156 netCe6,154 rmsk,136 uniprot,1872 uniprot,1876 line-up netCaePb1,223 netCaeRem2,223 netCb3,223 netCe6,221 line-ups netCaePb1,208 netCaeRem2,208 netCb3,208 netCe6,206 lines chainCaePb1,91 chainCaePb1,98 chainCaePb1,122 chainCaeRem2,91 chainCaeRem2,98 chainCaeRem2,122 chainCb3,91 chainCb3,98 chainCb3,122 chainCe6,89 chainCe6,96 chainCe6,120 netCaePb1,136 netCaeRem2,136 netCb3,136 netCe6,134 link gc5Base,63 quality,77 uniprot,491 uniprot,1675 linked gap,142 spMut,155 linkout spMut,196 spMut,202 spMut,216 linux.x86_64 uniprot,1919 lipid uniprot,346 lipman blastCe6SG,168 est,719 intronEst,797 mrna,436 lipoification uniprot,577 list est,212 intronEst,287 mrna,158 spMut,434 tRNAs,48 uniprot,979 uniprot,1165 uniprot,1831 lists spMut,203 spMut,217 literature uniprot,434 lm spMut,497 uniprot,2019 local blastCe6SG,171 chainCaePb1,71 chainCaePb1,144 chainCaeRem2,71 chainCaeRem2,144 chainCb3,71 chainCb3,144 chainCe6,69 chainCe6,142 located simpleRepeat,21 spMut,303 location chainCaePb1,209 chainCaeRem2,209 chainCb3,209 chainCe6,207 spMut,147 uniprot,554 uniprot,767 uniprot,1417 locations gap,3 spMut,111 uniprot,451 logic est,279 intronEst,354 mrna,225 long est,646 intronEst,721 rmsk,132 rmsk,137 longer chainCaePb1,41 chainCaeRem2,41 chainCb3,41 chainCe6,39 tRNAs,192 longest netCaePb1,201 netCaeRem2,201 netCb3,201 netCe6,199 loss tRNAs,231 lot uniprot,1950 low rmsk,29 rmsk,152 tRNAs,293 lowe tRNAs,337 tRNAs,368 tRNAs,440 lower netCaePb1,177 netCaeRem2,177 netCb3,177 netCe6,175 lower-level netCaePb1,348 netCaePb1,354 netCaeRem2,348 netCaeRem2,354 netCb3,348 netCb3,354 netCe6,346 netCe6,352 ls-snp spMut,286 uniprot,1536 ltr rmsk,141 m augustusGene,287 augustusGene,289 augustusGene,317 made netCaePb1,456 netCaeRem2,456 netCb3,456 netCe6,454 uniprot,931 uniprot,938 maglott xenoRefGene,366 mailing spMut,433 uniprot,1830 main unipAliSwissprot,12 uniprot,156 uniprot,1548 maintained tRNAs,334 uniprot,719 make blastCe6SG,69 est,417 est,483 intronEst,492 intronEst,558 tRNAs,252 uniprot,1406 making tRNAs,356 uniprot,1978 mammalian xenoRefGene,346 manner uniprot,1469 manual uniprot,1652 many est,147 intronEst,106 intronEst,222 mrna,93 netCaePb1,87 netCaeRem2,87 netCb3,87 netCe6,85 uniprot,932 uniprot,1124 map chainCaePb1,237 chainCaeRem2,237 chainCb3,237 chainCe6,235 gap,146 gap,164 uniprot,758 uniprot,1885 mapped augustusGene,298 blastCe6SG,7 spMut,268 uniprot,26 uniprot,97 uniprot,117 uniprot,132 uniprot,200 uniprot,213 uniprot,632 uniprot,1517 mapping ctgPos2,4 gap,4 gc5Base,8 gold,5 quality,8 spMut,280 uniprot,725 uniprot,752 uniprot,775 uniprot,904 uniprot,1213 uniprot,1322 uniprot,1613 uniprot,1853 mappings uniprot,1362 mar augustusGene,309 chainCaeRem2,6 chainCaeRem2,24 netCaeRem2,6 netCaeRem2,57 tRNAs,461 mario augustusGene,102 augustusGene,283 mark est,504 intronEst,579 spMut,289 spMut,457 uniprot,1539 uniprot,1956 marked chainCaePb1,447 chainCaeRem2,447 chainCb3,447 chainCe6,445 tRNAs,287 marker gap,150 markers microsat,23 markov augustusGene,325 masked rmsk,71 masker chainCaePb1,578 chainCaeRem2,578 chainCb3,578 chainCe6,576 masking chainCaePb1,315 chainCaeRem2,315 chainCb3,315 chainCe6,313 match chainCaePb1,214 chainCaeRem2,214 chainCb3,214 chainCe6,212 est,84 est,289 est,304 est,345 est,363 intronEst,159 intronEst,364 intronEst,379 intronEst,420 intronEst,438 mrna,235 mrna,250 mrna,291 mrna,309 netCaePb1,202 netCaePb1,240 netCaeRem2,202 netCaeRem2,240 netCb3,202 netCb3,240 netCe6,200 netCe6,238 uniprot,1305 uniprot,1341 matched blastCe6SG,131 matches est,72 mrna,53 matching chainCaePb1,217 chainCaeRem2,217 chainCb3,217 chainCe6,215 est,90 intronEst,165 uniprot,1068 uniprot,1075 matrix chainCaePb1,395 chainCaeRem2,395 chainCb3,395 chainCe6,393 tRNAs,494 mature est,474 intronEst,549 unipChain,3 uniprot,251 uniprot,292 maximally chainCaePb1,387 chainCaeRem2,387 chainCb3,387 chainCe6,385 maximilian spMut,452 uniprot,1944 maximum blastCe6SG,95 est,629 intronEst,704 maxtracks augustusGene,139 may chainCaePb1,135 chainCaeRem2,135 chainCb3,135 chainCe6,6 chainCe6,23 chainCe6,133 est,143 est,261 est,369 est,479 est,481 est,493 est,495 est,515 est,640 gc5Base,40 intronEst,218 intronEst,336 intronEst,444 intronEst,554 intronEst,556 intronEst,568 intronEst,570 intronEst,590 intronEst,715 mrna,89 mrna,207 mrna,315 netCaePb1,116 netCaeRem2,116 netCb3,116 netCe6,6 netCe6,56 netCe6,114 quality,56 rmsk,234 rmsk,256 rmsk,266 simpleRepeat,43 spMut,524 tRNAs,210 tRNAs,212 tRNAs,325 uniprot,2046 mcgarvey xenoRefGene,338 md5 uniprot,1601 mdash est,453 est,457 intronEst,528 intronEst,532 mean tRNAs,117 mediating uniprot,314 medical spMut,56 medicine ctgPos2,131 gap,206 gold,178 spMut,39 medium xenoRefGene,73 mellifera augustusGene,216 menu xenoRefGene,174 method uniprot,726 uniprot,753 uniprot,776 methods augustusGene,46 blastCe6SG,36 chainCaePb1,288 chainCaeRem2,288 chainCb3,288 chainCe6,286 est,415 intronEst,490 microsat,45 mrna,354 netCaePb1,252 netCaePb1,261 netCaeRem2,252 netCaeRem2,261 netCb3,252 netCb3,261 netCe6,250 netCe6,259 rmsk,210 simpleRepeat,55 spMut,237 uniprot,777 xenoRefGene,217 micro-satellites rmsk,151 microsatellite microsat,1 microsat,22 microsatellites microsat,2 might est,108 est,649 intronEst,183 intronEst,724 miller blastCe6SG,164 chainCaePb1,438 chainCaePb1,486 chainCaePb1,512 chainCaePb1,532 chainCaePb1,605 chainCaeRem2,438 chainCaeRem2,486 chainCaeRem2,512 chainCaeRem2,532 chainCaeRem2,605 chainCb3,438 chainCb3,486 chainCb3,512 chainCb3,532 chainCb3,605 chainCe6,436 chainCe6,484 chainCe6,510 chainCe6,530 chainCe6,603 netCaePb1,440 netCaePb1,470 netCaePb1,518 netCaeRem2,440 netCaeRem2,470 netCaeRem2,518 netCb3,440 netCb3,470 netCb3,518 netCe6,438 netCe6,468 netCe6,516 minexonintronprob augustusGene,135 minmeanexonintronprob augustusGene,137 minmei chainCaePb1,430 chainCaeRem2,430 chainCb3,430 chainCe6,428 netCaePb1,432 netCaeRem2,432 netCb3,432 netCe6,430 mismatch rmsk,188 misplacements uniprot,853 mj xenoRefGene,337 mode est,63 est,128 gold,109 intronEst,141 intronEst,203 mrna,44 mrna,74 netCaePb1,71 netCaeRem2,71 netCb3,71 netCe6,69 rmsk,113 model augustusGene,121 augustusGene,326 model-based tRNAs,61 models augustusGene,49 augustusGene,65 augustusGene,97 augustusGene,145 augustusGene,178 tRNAs,403 uniprot,733 modes chainCaePb1,199 chainCaeRem2,199 chainCb3,199 chainCe6,197 modifications unipModif,2 unipModif,6 uniprot,340 uniprot,574 modified rmsk,57 uniprot,343 modsnp spMut,508 uniprot,2030 moiety-binding uniprot,347 mol blastCe6SG,176 tRNAs,430 molecule tRNAs,147 months uniprot,1573 more augustusGene,35 blastCe6SG,112 blastCe6SG,155 chainCaePb1,124 chainCaePb1,185 chainCaeRem2,124 chainCaeRem2,185 chainCb3,124 chainCb3,185 chainCe6,122 chainCe6,183 est,68 est,175 est,271 est,401 intronEst,250 intronEst,346 intronEst,476 microsat,96 mrna,49 mrna,121 mrna,217 mrna,338 rmsk,282 simpleRepeat,57 spMut,444 uniprot,498 uniprot,691 uniprot,984 uniprot,1841 xenoRefGene,176 morgulis chainCaePb1,456 chainCaePb1,566 chainCaeRem2,456 chainCaeRem2,566 chainCb3,456 chainCb3,566 chainCe6,454 chainCe6,564 most augustusGene,93 augustusGene,110 est,452 intronEst,527 rmsk,215 uniprot,683 uniprot,756 uniprot,1295 uniprot,1391 mostly tRNAs,298 uniprot,1365 motif tRNAs,38 motifs uniprot,388 mouse chainCaePb1,545 chainCaeRem2,545 chainCb3,545 chainCe6,543 netCaePb1,483 netCaeRem2,483 netCb3,483 netCe6,481 spMut,163 uniprot,521 uniprot,535 mrna est,9 est,475 est,491 est,574 intronEst,10 intronEst,550 intronEst,566 intronEst,649 mrna,9 mrna,14 mrna,129 mrna,371 mrna,411 mrna,418 mrnas mrna,3 mrna,6 mrna,21 mrna,139 mrna,233 mrna,248 mrna,289 mrna,307 mrna,332 mrna,358 much netCaePb1,375 netCaePb1,392 netCaeRem2,375 netCaeRem2,392 netCb3,375 netCb3,392 netCe6,373 netCe6,390 mujica uniprot,1967 multiple chainCaePb1,156 chainCaeRem2,156 chainCb3,156 chainCe6,154 est,658 intronEst,733 mrna,374 uniprot,58 uniprot,1067 uniprot,1095 xenoRefGene,245 multistep tRNAs,492 must intronEst,63 mutagenesis uniprot,353 mutat spMut,522 uniprot,2044 mutated uniprot,618 mutation chainCaePb1,145 chainCaeRem2,145 chainCb3,145 chainCe6,143 spMut,166 mutation-related uniprot,408 mutations spMut,173 unipMut,1 unipMut,5 uniprot,352 myers blastCe6SG,166 n50 ctgPos2,113 gold,106 name chainCaePb1,275 chainCaeRem2,275 chainCb3,275 chainCe6,273 est,201 intronEst,276 mrna,147 spMut,133 uniprot,105 uniprot,461 uniprot,541 uniprot,1577 xenoRefGene,109 xenoRefGene,119 xenoRefGene,124 names chainCaePb1,203 chainCaeRem2,203 chainCb3,203 chainCe6,201 xenoRefGene,131 native augustusGene,295 natl chainCaePb1,550 chainCaeRem2,550 chainCb3,550 chainCe6,548 netCaePb1,488 netCaeRem2,488 netCb3,488 netCe6,486 natural netCaePb1,313 netCaeRem2,313 netCb3,313 netCe6,311 spMut,83 naturally-occurring spMut,178 naview tRNAs,348 nbci uniprot,822 nbsp chainCaePb1,398 chainCaeRem2,398 chainCb3,398 chainCe6,396 ncbi blastCe6SG,150 uniprot,840 uniprot,856 uniprot,1024 uniprot,1046 uniprot,1049 uniprot,1079 uniprot,1204 uniprot,1274 uniprot,1280 uniprot,1289 uniprot,1299 xenoRefGene,29 xenoRefGene,299 xenoRefGene,368 necessary netCaePb1,297 netCaeRem2,297 netCb3,297 netCe6,295 nematodes augustusGene,211 net netCaePb1,3 netCaePb1,12 netCaeRem2,3 netCaeRem2,12 netCb3,3 netCb3,12 netCe6,3 netCe6,11 netclass netCaePb1,367 netCaePb1,410 netCaeRem2,367 netCaeRem2,410 netCb3,367 netCb3,410 netCe6,365 netCe6,408 nets netCaePb1,454 netCaeRem2,454 netCb3,454 netCe6,452 netsyntenic netCaePb1,335 netCaePb1,408 netCaeRem2,335 netCaeRem2,408 netCb3,335 netCb3,408 netCe6,333 netCe6,406 new augustusGene,329 tRNAs,482 newer est,526 intronEst,601 rmsk,236 next blastCe6SG,63 chainCaePb1,254 chainCaePb1,283 chainCaeRem2,254 chainCaeRem2,283 chainCb3,254 chainCb3,283 chainCe6,252 chainCe6,281 nig augustusGene,270 no blastCe6SG,102 est,95 intronEst,170 microsat,73 spMut,142 tRNAs,191 uniprot,1031 uniprot,1078 uniprot,1262 uniprot,1324 non-coding augustusGene,75 xenoRefGene,193 non-mrna est,595 intronEst,670 non-p xenoRefGene,3 non-protein-coding xenoRefGene,18 xenoRefGene,201 non-redundant xenoRefGene,374 nonsyn netCaePb1,238 netCaeRem2,238 netCb3,238 netCe6,236 nor tRNAs,265 not est,341 est,455 est,482 est,496 gap,141 gap,166 intronEst,416 intronEst,530 intronEst,557 intronEst,571 mrna,287 netCaePb1,302 netCaeRem2,302 netCb3,302 netCe6,300 rmsk,272 tRNAs,136 tRNAs,153 tRNAs,213 tRNAs,263 tRNAs,306 uniprot,169 uniprot,627 uniprot,959 uniprot,1130 uniprot,1455 note est,626 intronEst,701 rmsk,230 spMut,12 tRNAs,283 uniprot,695 novo augustusGene,304 now uniprot,1680 ns gap,123 gap,176 netCaePb1,382 netCaeRem2,382 netCb3,382 netCe6,380 nuclear rmsk,126 rmsk,134 nucleic est,727 intronEst,805 microsat,125 mrna,444 simpleRepeat,85 spMut,475 tRNAs,381 tRNAs,404 tRNAs,457 tRNAs,500 uniprot,1997 xenoRefGene,349 xenoRefGene,382 number augustusGene,153 intronEst,147 rmsk,203 numbers gap,121 o xenoRefGene,331 observed uniprot,1114 obtain spMut,405 tRNAs,45 tRNAs,67 uniprot,1803 obtained augustusGene,126 spMut,365 uniprot,1506 uniprot,1695 occur simpleRepeat,36 oct augustusGene,334 blastCe6SG,179 of augustusGene,72 augustusGene,84 augustusGene,92 augustusGene,94 augustusGene,154 augustusGene,195 augustusGene,236 blastCe6SG,21 blastCe6SG,98 blastCe6SG,115 blastCe6SG,127 blastCe6SG,135 blastCe6SG,148 chainCaePb1,20 chainCaePb1,143 chainCaePb1,163 chainCaePb1,212 chainCaePb1,266 chainCaePb1,276 chainCaePb1,367 chainCaePb1,372 chainCaePb1,390 chainCaePb1,409 chainCaePb1,474 chainCaePb1,496 chainCaeRem2,20 chainCaeRem2,143 chainCaeRem2,163 chainCaeRem2,212 chainCaeRem2,266 chainCaeRem2,276 chainCaeRem2,367 chainCaeRem2,372 chainCaeRem2,390 chainCaeRem2,409 chainCaeRem2,474 chainCaeRem2,496 chainCb3,20 chainCb3,143 chainCb3,163 chainCb3,212 chainCb3,266 chainCb3,276 chainCb3,367 chainCb3,372 chainCb3,390 chainCb3,409 chainCb3,474 chainCb3,496 chainCe6,19 chainCe6,141 chainCe6,161 chainCe6,210 chainCe6,264 chainCe6,274 chainCe6,365 chainCe6,370 chainCe6,388 chainCe6,407 chainCe6,472 chainCe6,494 ctgPos2,22 ctgPos2,69 ctgPos2,79 ctgPos2,95 ctgPos2,130 est,43 est,73 est,82 est,100 est,102 est,137 est,176 est,202 est,213 est,249 est,307 est,473 est,489 est,507 est,524 est,586 est,594 est,598 est,678 gap,30 gap,36 gap,70 gap,80 gap,92 gap,102 gap,122 gap,180 gap,186 gap,205 gc5Base,19 gc5Base,46 gc5Base,52 gc5Base,67 gc5Base,76 gold,15 gold,62 gold,72 gold,88 gold,122 gold,151 gold,177 intronEst,33 intronEst,54 intronEst,66 intronEst,92 intronEst,104 intronEst,113 intronEst,148 intronEst,157 intronEst,175 intronEst,177 intronEst,212 intronEst,251 intronEst,277 intronEst,288 intronEst,324 intronEst,382 intronEst,548 intronEst,564 intronEst,582 intronEst,599 intronEst,661 intronEst,669 intronEst,673 intronEst,753 microsat,27 microsat,55 microsat,64 microsat,81 mrna,54 mrna,83 mrna,122 mrna,148 mrna,159 mrna,195 mrna,253 mrna,394 netCaePb1,29 netCaePb1,172 netCaePb1,192 netCaePb1,376 netCaePb1,417 netCaePb1,452 netCaeRem2,29 netCaeRem2,172 netCaeRem2,192 netCaeRem2,376 netCaeRem2,417 netCaeRem2,452 netCb3,29 netCb3,172 netCb3,192 netCb3,376 netCb3,417 netCb3,452 netCe6,28 netCe6,170 netCe6,190 netCe6,374 netCe6,415 netCe6,450 quality,21 quality,32 quality,38 quality,62 quality,68 quality,81 quality,93 rmsk,39 rmsk,59 rmsk,84 rmsk,122 rmsk,176 rmsk,186 rmsk,204 rmsk,218 rmsk,321 simpleRepeat,40 spMut,82 spMut,112 spMut,206 spMut,296 tRNAs,49 tRNAs,72 tRNAs,82 tRNAs,90 tRNAs,164 tRNAs,232 tRNAs,245 tRNAs,273 tRNAs,320 tRNAs,358 tRNAs,373 tRNAs,450 tRNAs,481 tRNAs,496 unipAliSwissprot,5 unipAliTrembl,5 unipInterest,4 uniprot,83 uniprot,269 uniprot,298 uniprot,310 uniprot,385 uniprot,407 uniprot,420 uniprot,452 uniprot,465 uniprot,542 uniprot,561 uniprot,652 uniprot,677 uniprot,877 uniprot,902 uniprot,980 uniprot,1111 uniprot,1125 uniprot,1159 uniprot,1166 uniprot,1181 uniprot,1288 uniprot,1298 uniprot,1306 uniprot,1315 uniprot,1347 uniprot,1360 uniprot,1363 uniprot,1397 uniprot,1436 uniprot,1457 uniprot,1590 uniprot,1594 uniprot,1639 uniprot,1646 uniprot,1656 uniprot,1666 uniprot,1684 uniprot,1687 uniprot,1710 uniprot,1951 xenoRefGene,63 xenoRefGene,82 xenoRefGene,96 xenoRefGene,121 xenoRefGene,233 xenoRefGene,265 xenoRefGene,377 off chainCaePb1,245 chainCaePb1,251 chainCaeRem2,245 chainCaeRem2,251 chainCb3,245 chainCb3,251 chainCe6,243 chainCe6,249 xenoRefGene,134 often chainCaePb1,174 chainCaePb1,186 chainCaeRem2,174 chainCaeRem2,186 chainCb3,174 chainCb3,186 chainCe6,172 chainCe6,184 older uniprot,1560 uniprot,1647 oligo-dt est,466 intronEst,541 on augustusGene,29 augustusGene,37 augustusGene,151 blastCe6SG,29 blastCe6SG,157 chainCaePb1,233 chainCaePb1,259 chainCaeRem2,233 chainCaeRem2,259 chainCb3,233 chainCb3,259 chainCe6,231 chainCe6,257 est,232 est,270 gap,33 intronEst,307 intronEst,345 mrna,178 mrna,216 netCaePb1,140 netCaePb1,154 netCaePb1,204 netCaePb1,209 netCaePb1,224 netCaePb1,263 netCaeRem2,140 netCaeRem2,154 netCaeRem2,204 netCaeRem2,209 netCaeRem2,224 netCaeRem2,263 netCb3,140 netCb3,154 netCb3,204 netCb3,209 netCb3,224 netCb3,263 netCe6,138 netCe6,152 netCe6,202 netCe6,207 netCe6,222 netCe6,261 rmsk,74 rmsk,243 spMut,284 spMut,517 tRNAs,269 uniprot,19 uniprot,61 uniprot,129 uniprot,172 uniprot,232 uniprot,443 uniprot,482 uniprot,648 uniprot,728 uniprot,772 uniprot,809 uniprot,859 uniprot,1035 uniprot,1139 uniprot,1176 uniprot,1366 uniprot,1446 uniprot,1534 uniprot,1558 uniprot,1567 uniprot,1581 uniprot,1605 uniprot,1887 uniprot,2039 xenoRefGene,345 once uniprot,647 one augustusGene,169 chainCaePb1,151 chainCaePb1,267 chainCaeRem2,151 chainCaeRem2,267 chainCb3,151 chainCb3,267 chainCe6,149 chainCe6,265 ctgPos2,93 est,173 est,273 est,306 gold,86 intronEst,69 intronEst,73 intronEst,248 intronEst,348 intronEst,381 mrna,119 mrna,219 mrna,252 netCaePb1,191 netCaePb1,290 netCaePb1,386 netCaeRem2,191 netCaeRem2,290 netCaeRem2,386 netCb3,191 netCb3,290 netCb3,386 netCe6,189 netCe6,288 netCe6,384 uniprot,74 uniprot,77 uniprot,155 uniprot,981 uniprot,1098 uniprot,1638 ones uniprot,1041 ongoing uniprot,1569 only chainCaePb1,263 chainCaeRem2,263 chainCb3,263 chainCe6,261 est,157 est,286 est,359 est,392 est,669 intronEst,232 intronEst,361 intronEst,434 intronEst,467 intronEst,744 microsat,61 mrna,103 mrna,232 mrna,305 mrna,385 spMut,157 spMut,406 uniprot,645 uniprot,975 uniprot,1178 uniprot,1302 uniprot,1804 xenoRefGene,210 xenoRefGene,256 open spMut,46 opposite netCaePb1,236 netCaeRem2,236 netCb3,236 netCe6,234 option augustusGene,167 augustusGene,187 est,405 intronEst,480 mrna,342 xenoRefGene,114 xenoRefGene,166 optional xenoRefGene,144 options gc5Base,70 quality,84 or chainCaePb1,89 chainCaePb1,113 chainCaePb1,146 chainCaeRem2,89 chainCaeRem2,113 chainCaeRem2,146 chainCb3,89 chainCb3,113 chainCb3,146 chainCe6,87 chainCe6,111 chainCe6,144 est,174 est,298 est,317 est,326 est,391 est,448 est,480 est,494 intronEst,249 intronEst,373 intronEst,392 intronEst,401 intronEst,466 intronEst,523 intronEst,555 intronEst,569 mrna,120 mrna,244 mrna,263 mrna,272 netCaePb1,175 netCaePb1,358 netCaePb1,387 netCaeRem2,175 netCaeRem2,358 netCaeRem2,387 netCb3,175 netCb3,358 netCb3,387 netCe6,173 netCe6,356 netCe6,385 spMut,57 spMut,322 spMut,358 spMut,378 spMut,438 tRNAs,183 tRNAs,211 tRNAs,235 tRNAs,300 uniprot,317 uniprot,389 uniprot,436 uniprot,829 uniprot,888 uniprot,982 uniprot,1038 uniprot,1205 uniprot,1266 uniprot,1401 uniprot,1449 uniprot,1722 uniprot,1776 uniprot,1835 uniprot,1879 xenoRefGene,132 order gap,27 tRNAs,250 uniprot,872 ordered gap,104 organ est,198 est,204 intronEst,273 intronEst,279 mrna,144 mrna,150 organism chainCaePb1,242 chainCaePb1,272 chainCaeRem2,242 chainCaeRem2,272 chainCb3,242 chainCb3,272 chainCe6,240 chainCe6,270 organisms netCaePb1,403 netCaeRem2,403 netCb3,403 netCe6,401 rmsk,261 uniprot,998 xenoRefGene,21 organizes chainCaePb1,344 chainCaeRem2,344 chainCb3,344 chainCe6,342 orientation gap,29 netCaePb1,237 netCaeRem2,237 netCb3,237 netCe6,235 oriented gap,106 originally spMut,223 orthologous netCaePb1,39 netCaeRem2,39 netCb3,39 netCe6,38 ostell est,721 intronEst,799 mrna,438 other augustusGene,208 netCaePb1,102 netCaePb1,195 netCaeRem2,102 netCaeRem2,195 netCb3,102 netCb3,195 netCe6,100 netCe6,193 rmsk,165 spMut,23 tRNAs,243 unipOther,1 unipOther,4 uniprot,90 uniprot,122 uniprot,205 uniprot,319 uniprot,393 uniprot,396 uniprot,862 uniprot,1200 xenoRefGene,1 xenoRefGene,22 others uniprot,1312 uniprot,1344 otherwise est,650 intronEst,725 ottonello tRNAs,478 ouml augustusGene,269 our augustusGene,43 spMut,367 spMut,432 spMut,439 uniprot,891 uniprot,1697 uniprot,1765 uniprot,1829 uniprot,1836 uniprot,1870 uniprot,1874 out chainCaePb1,366 chainCaeRem2,366 chainCb3,366 chainCe6,364 quality,43 outputs rmsk,35 outside est,585 intronEst,660 uniprot,558 over blastCe6SG,111 blastCe6SG,125 chainCaePb1,159 chainCaePb1,381 chainCaeRem2,159 chainCaeRem2,381 chainCb3,159 chainCb3,381 chainCe6,157 chainCe6,379 spMut,164 uniprot,522 uniprot,536 overlapping chainCaePb1,74 chainCaePb1,139 chainCaeRem2,74 chainCaeRem2,139 chainCb3,74 chainCb3,139 chainCe6,72 chainCe6,137 gap,93 own uniprot,724 p blastCe6SG,77 blastCe6SG,87 chainCaePb1,31 chainCaePb1,59 chainCaePb1,118 chainCaePb1,165 chainCaePb1,298 chainCaePb1,356 chainCaeRem2,31 chainCaeRem2,59 chainCaeRem2,118 chainCaeRem2,165 chainCaeRem2,298 chainCaeRem2,356 chainCb3,31 chainCb3,59 chainCb3,118 chainCb3,165 chainCb3,298 chainCb3,356 chainCe6,29 chainCe6,57 chainCe6,116 chainCe6,163 chainCe6,296 chainCe6,354 ctgPos2,24 est,1 est,4 est,18 est,614 gold,17 intronEst,3 intronEst,19 intronEst,120 intronEst,689 mrna,1 mrna,4 mrna,19 mrna,356 netCaePb1,23 netCaePb1,31 netCaeRem2,23 netCaeRem2,31 netCb3,23 netCb3,31 netCe6,22 netCe6,30 quality,3 quality,95 xenoRefGene,24 xenoRefGene,224 pac chainCaePb1,519 chainCaeRem2,519 chainCb3,519 chainCe6,517 pacificus blastCe6SG,78 blastCe6SG,88 chainCaePb1,32 chainCaePb1,60 chainCaePb1,119 chainCaePb1,166 chainCaePb1,299 chainCaePb1,357 chainCaeRem2,32 chainCaeRem2,60 chainCaeRem2,119 chainCaeRem2,166 chainCaeRem2,299 chainCaeRem2,357 chainCb3,32 chainCb3,60 chainCb3,119 chainCb3,166 chainCb3,299 chainCb3,357 chainCe6,30 chainCe6,58 chainCe6,117 chainCe6,164 chainCe6,297 chainCe6,355 ctgPos2,25 ctgPos2,119 est,2 est,5 est,19 est,615 gap,194 gold,18 gold,166 intronEst,4 intronEst,20 intronEst,121 intronEst,690 mrna,2 mrna,5 mrna,20 mrna,357 netCaePb1,24 netCaePb1,32 netCaeRem2,24 netCaeRem2,32 netCb3,24 netCb3,32 netCe6,23 netCe6,31 quality,4 quality,96 xenoRefGene,4 xenoRefGene,25 xenoRefGene,225 pack chainCaePb1,195 chainCaeRem2,195 chainCb3,195 chainCe6,193 page est,113 est,414 intronEst,188 intronEst,489 mrna,59 mrna,353 rmsk,77 spMut,505 uniprot,236 uniprot,651 uniprot,1158 uniprot,1585 uniprot,2027 xenoRefGene,100 xenoRefGene,191 pages netCaePb1,268 netCaeRem2,268 netCb3,268 netCe6,266 pair gap,43 gap,135 paired-end gap,114 pairwise chainCaePb1,515 chainCaeRem2,515 chainCb3,515 chainCe6,513 paralogs chainCaePb1,189 chainCaeRem2,189 chainCb3,189 chainCe6,187 parsed spMut,258 part blastCe6SG,147 netCaePb1,28 netCaeRem2,28 netCb3,28 netCe6,27 quality,92 spMut,295 particular augustusGene,234 chainCaePb1,161 chainCaeRem2,161 chainCb3,161 chainCe6,159 spMut,188 spMut,208 uniprot,1019 past uniprot,1690 patch uniprot,1423 patches uniprot,1432 patterns augustusGene,56 pavesi tRNAs,41 tRNAs,470 penalty blastCe6SG,104 pennsylvania chainCaePb1,426 chainCaeRem2,426 chainCb3,426 chainCe6,424 netCaePb1,428 netCaeRem2,428 netCb3,428 netCe6,426 peptide unipLocSignal,2 uniprot,477 uniprot,565 peptides blastCe6SG,23 unipLocSignal,5 uniprot,239 uniprot,512 per tRNAs,94 percent gc5Base,2 gc5Base,4 gc5Base,14 percentage gc5Base,18 perfect microsat,31 perhaps est,576 intronEst,651 period microsat,65 permitted rmsk,273 personal spMut,55 spMut,74 pharmaceuticals uniprot,1969 phenotype uniprot,432 phosphorylation uniprot,590 physician spMut,67 physicians spMut,21 pia uniprot,1971 pick uniprot,1089 pipeline spMut,287 uniprot,1537 pipelines uniprot,1850 place netCaePb1,287 netCaeRem2,287 netCb3,287 netCe6,285 placed netCaePb1,329 netCaeRem2,329 netCb3,329 netCe6,327 places est,659 intronEst,734 mrna,375 xenoRefGene,246 plasmid est,437 intronEst,512 please spMut,429 tRNAs,278 tRNAs,282 tRNAs,361 uniprot,685 uniprot,1439 uniprot,1826 pmc chainCaePb1,564 chainCaePb1,620 chainCaeRem2,564 chainCaeRem2,620 chainCb3,564 chainCb3,620 chainCe6,562 chainCe6,618 est,739 est,757 intronEst,817 intronEst,835 microsat,136 mrna,456 mrna,474 netCaePb1,502 netCaePb1,533 netCaeRem2,502 netCaeRem2,533 netCb3,502 netCb3,533 netCe6,500 netCe6,531 simpleRepeat,96 spMut,486 tRNAs,392 tRNAs,415 tRNAs,468 tRNAs,511 uniprot,2008 xenoRefGene,318 xenoRefGene,360 xenoRefGene,394 pmc146525 tRNAs,469 pmc148217 microsat,137 simpleRepeat,97 pmc187518 est,758 intronEst,836 mrna,475 xenoRefGene,319 pmc208784 chainCaePb1,565 chainCaeRem2,565 chainCb3,565 chainCe6,563 netCaePb1,503 netCaeRem2,503 netCb3,503 netCe6,501 pmc2686519 tRNAs,393 pmc308124 tRNAs,416 pmc308779 est,740 intronEst,818 mrna,457 pmc3245120 spMut,487 uniprot,2009 pmc3965018 xenoRefGene,361 pmc430961 chainCaePb1,621 chainCaeRem2,621 chainCb3,621 chainCe6,619 netCaePb1,534 netCaeRem2,534 netCb3,534 netCe6,532 pmc523650 tRNAs,512 pmc539979 xenoRefGene,395 pmid augustusGene,314 augustusGene,339 chainCaePb1,524 chainCaePb1,562 chainCaePb1,589 chainCaePb1,618 chainCaeRem2,524 chainCaeRem2,562 chainCaeRem2,589 chainCaeRem2,618 chainCb3,524 chainCb3,562 chainCb3,589 chainCb3,618 chainCe6,522 chainCe6,560 chainCe6,587 chainCe6,616 est,737 est,755 intronEst,815 intronEst,833 microsat,134 mrna,454 mrna,472 netCaePb1,500 netCaePb1,531 netCaeRem2,500 netCaeRem2,531 netCb3,500 netCb3,531 netCe6,498 netCe6,529 simpleRepeat,94 spMut,484 spMut,528 tRNAs,390 tRNAs,413 tRNAs,438 tRNAs,466 tRNAs,509 uniprot,2006 uniprot,2050 xenoRefGene,316 xenoRefGene,358 xenoRefGene,392 point est,519 intronEst,594 policy ctgPos2,138 gap,213 gold,185 poly-a augustusGene,62 est,471 est,545 intronEst,546 intronEst,620 polymorphic microsat,41 simpleRepeat,46 polypeptide unipChain,6 uniprot,287 uniprot,289 population microsat,44 position quality,31 spMut,126 uniprot,610 positions spMut,81 spMut,252 uniprot,1495 positive tRNAs,88 possible netCaePb1,96 netCaeRem2,96 netCb3,96 netCe6,94 uniprot,601 possibly simpleRepeat,18 post-processing uniprot,295 potential tRNAs,422 pp tRNAs,367 pre-filters tRNAs,43 precompiled spMut,382 uniprot,1780 predicted blastCe6SG,39 tRNAs,19 tRNAs,322 uniprot,48 uniprot,193 xenoRefGene,70 prediction augustusGene,321 xenoRefGene,55 predictions augustusGene,6 augustusGene,11 augustusGene,18 augustusGene,26 augustusGene,191 blastCe6SG,14 tRNAs,12 tRNAs,78 tRNAs,295 unipAliSwissprot,21 unipAliTrembl,13 unipChain,11 unipConflict,9 unipDisulfBond,9 unipDomain,7 unipInterest,9 unipLocCytopl,8 unipLocExtra,8 unipLocSignal,9 unipLocTransMemb,8 unipModif,10 unipMut,9 unipOther,9 unipRepeat,7 unipStruct,11 uniprot,10 xenoRefGene,10 xenoRefGene,157 xenoRefGene,186 prepared gc5Base,80 uniprot,712 present rmsk,44 presentation gc5Base,75 previous uniprot,1654 primarily spMut,19 primary tRNAs,73 tRNAs,234 unipStruct,4 uniprot,360 primed est,463 intronEst,538 primer est,450 intronEst,525 priming est,546 intronEst,621 pripac1 spMut,418 uniprot,1816 pristionchus ctgPos2,118 gap,193 gold,165 probably tRNAs,151 tRNAs,189 problem uniprot,1359 uniprot,1389 proc chainCaePb1,549 chainCaeRem2,549 chainCb3,549 chainCe6,547 netCaePb1,487 netCaeRem2,487 netCb3,487 netCe6,485 procedure uniprot,990 process gap,112 netCaePb1,311 netCaeRem2,311 netCb3,311 netCe6,309 uniprot,321 uniprot,879 uniprot,905 uniprot,1229 uniprot,1448 processed chainCaePb1,177 chainCaeRem2,177 chainCb3,177 chainCe6,175 produce blastCe6SG,195 produced ctgPos2,124 est,697 gap,199 gold,171 intronEst,775 mrna,414 xenoRefGene,284 products unipChain,5 professionals spMut,24 program augustusGene,21 augustusGene,257 blastCe6SG,58 blastCe6SG,83 chainCaePb1,335 chainCaePb1,377 chainCaePb1,468 chainCaeRem2,335 chainCaeRem2,377 chainCaeRem2,468 chainCb3,335 chainCb3,377 chainCb3,468 chainCe6,333 chainCe6,375 chainCe6,466 microsat,100 microsat,120 mrna,367 netCaePb1,281 netCaePb1,334 netCaePb1,366 netCaeRem2,281 netCaeRem2,334 netCaeRem2,366 netCb3,281 netCb3,334 netCb3,366 netCe6,279 netCe6,332 netCe6,364 rmsk,20 rmsk,34 simpleRepeat,62 simpleRepeat,80 spMut,278 tRNAs,28 tRNAs,53 tRNAs,63 tRNAs,446 uniprot,1529 programs netCaePb1,411 netCaeRem2,411 netCb3,411 netCe6,409 uniprot,1877 project xenoRefGene,301 projected uniprot,800 projects est,540 est,559 est,589 intronEst,615 intronEst,634 intronEst,664 pronounced uniprot,1392 prot blastCe6SG,2 prot.bed uniprot,1931 uniprot,1933 protein blastCe6SG,118 blastCe6SG,137 spMut,150 spMut,209 spMut,467 spMut,472 spMut,519 unipChain,4 unipStruct,3 uniprot,5 uniprot,15 uniprot,84 uniprot,95 uniprot,111 uniprot,113 uniprot,137 uniprot,153 uniprot,194 uniprot,196 uniprot,252 uniprot,256 uniprot,267 uniprot,278 uniprot,293 uniprot,324 uniprot,359 uniprot,635 uniprot,672 uniprot,742 uniprot,760 uniprot,780 uniprot,790 uniprot,906 uniprot,916 uniprot,954 uniprot,966 uniprot,970 uniprot,1020 uniprot,1037 uniprot,1072 uniprot,1099 uniprot,1218 uniprot,1241 uniprot,1244 uniprot,1333 uniprot,1607 uniprot,1635 uniprot,1854 uniprot,1888 uniprot,1989 uniprot,1994 uniprot,2041 protein-coding augustusGene,73 xenoRefGene,16 xenoRefGene,199 protein-genome uniprot,875 uniprot,1174 protein-protein uniprot,315 protein-to-genome uniprot,1703 proteins blastCe6SG,5 blastCe6SG,40 unipAliSwissprot,7 unipAliTrembl,7 uniprot,243 uniprot,744 uniprot,925 uniprot,929 uniprot,1005 uniprot,1188 uniprot,1364 uniprot,1385 uniprot,1404 uniprot,1470 xenoRefGene,381 provide uniprot,1860 provided quality,90 tRNAs,318 uniprot,817 provides uniprot,489 providing augustusGene,254 rmsk,294 provisional xenoRefGene,72 pruitt xenoRefGene,320 xenoRefGene,362 pseudo tRNAs,290 pseudogenes chainCaePb1,178 chainCaePb1,192 chainCaeRem2,178 chainCaeRem2,192 chainCb3,178 chainCb3,192 chainCe6,176 chainCe6,190 tRNAs,299 uniprot,1184 psl chainCaePb1,330 chainCaeRem2,330 chainCb3,330 chainCe6,328 est,57 intronEst,135 mrna,38 uniprot,1479 pslmap spMut,254 spMut,277 uniprot,889 uniprot,1497 uniprot,1528 uniprot,1880 uniprot,1900 pslreps uniprot,1482 uniprot,1502 public est,708 intronEst,786 mrna,425 spMut,49 uniprot,709 publications spMut,101 uniprot,38 publicly rmsk,241 pubmed spMut,221 pull-down xenoRefGene,173 purpose simpleRepeat,32 putative blastCe6SG,86 q uniprot,1904 uniprot,1914 q99697 uniprot,1926 qualified spMut,66 quality est,75 mrna,56 quality,1 quality,6 quality,13 quality,19 quality,37 quality,87 query blastCe6SG,117 blastCe6SG,129 rmsk,47 rmsk,61 uniprot,1484 questions spMut,75 spMut,437 uniprot,1834 quickly mrna,330 xenoRefGene,152 quite simpleRepeat,45 quot chainCaePb1,63 chainCaePb1,65 chainCaePb1,250 chainCaePb1,252 chainCaeRem2,63 chainCaeRem2,65 chainCaeRem2,250 chainCaeRem2,252 chainCb3,63 chainCb3,65 chainCb3,250 chainCb3,252 chainCe6,61 chainCe6,63 chainCe6,248 chainCe6,250 est,241 est,243 est,281 est,283 est,297 est,299 est,333 est,335 est,350 est,352 gap,156 gap,158 gc5Base,58 gc5Base,62 gold,154 gold,156 intronEst,316 intronEst,318 intronEst,356 intronEst,358 intronEst,372 intronEst,374 intronEst,408 intronEst,410 intronEst,425 intronEst,427 mrna,187 mrna,189 mrna,227 mrna,229 mrna,243 mrna,245 mrna,279 mrna,281 mrna,296 mrna,298 spMut,135 spMut,136 spMut,192 spMut,195 spMut,198 spMut,201 spMut,212 spMut,215 tRNAs,205 tRNAs,207 tRNAs,289 tRNAs,291 uniprot,63 uniprot,66 uniprot,261 uniprot,263 uniprot,272 uniprot,274 uniprot,283 uniprot,285 uniprot,412 uniprot,416 uniprot,423 uniprot,426 uniprot,431 uniprot,435 uniprot,437 uniprot,441 uniprot,468 uniprot,470 uniprot,471 uniprot,474 uniprot,475 uniprot,478 uniprot,572 uniprot,575 r augustusGene,291 chainCaePb1,465 chainCaePb1,529 chainCaePb1,575 chainCaePb1,600 chainCaePb1,602 chainCaeRem2,465 chainCaeRem2,529 chainCaeRem2,575 chainCaeRem2,600 chainCaeRem2,602 chainCb3,465 chainCb3,529 chainCb3,575 chainCb3,600 chainCb3,602 chainCe6,463 chainCe6,527 chainCe6,573 chainCe6,598 chainCe6,600 netCaePb1,467 netCaePb1,513 netCaePb1,515 netCaeRem2,467 netCaeRem2,513 netCaeRem2,515 netCb3,467 netCb3,513 netCb3,515 netCe6,465 netCe6,511 netCe6,513 tRNAs,397 random augustusGene,119 est,542 intronEst,617 random-primed est,588 intronEst,663 raney blastCe6SG,204 spMut,461 uniprot,1960 range quality,47 spMut,411 tRNAs,260 uniprot,1809 ranked netCaePb1,278 netCaeRem2,278 netCb3,278 netCe6,276 rate tRNAs,89 rather est,543 intronEst,618 raw spMut,312 uniprot,1708 rc rmsk,170 read est,441 gap,42 gap,134 intronEst,516 reads gap,95 gap,115 rearrangement chainCaePb1,542 chainCaeRem2,542 chainCb3,542 chainCe6,540 netCaePb1,45 netCaePb1,182 netCaePb1,480 netCaeRem2,45 netCaeRem2,182 netCaeRem2,480 netCb3,45 netCb3,182 netCb3,480 netCe6,44 netCe6,180 netCe6,478 reasonably est,509 est,532 intronEst,584 intronEst,607 recently uniprot,1186 record spMut,200 uniprot,496 xenoRefGene,67 red spMut,182 reduced intronEst,100 refer spMut,430 uniprot,1827 reference uniprot,1378 uniprot,1422 xenoRefGene,31 xenoRefGene,347 xenoRefGene,369 references augustusGene,285 chainCaePb1,507 chainCaeRem2,507 chainCb3,507 chainCe6,505 est,714 intronEst,792 microsat,113 mrna,431 netCaePb1,463 netCaeRem2,463 netCb3,463 netCe6,461 rmsk,103 rmsk,305 simpleRepeat,73 spMut,462 tRNAs,354 uniprot,1984 xenoRefGene,302 refers gap,161 reflect quality,50 reflects rmsk,183 refseq spMut,243 uniprot,823 uniprot,828 uniprot,841 uniprot,845 uniprot,857 uniprot,864 uniprot,1002 uniprot,1010 uniprot,1055 uniprot,1207 uniprot,1236 uniprot,1276 uniprot,1290 xenoRefGene,2 xenoRefGene,5 xenoRefGene,34 xenoRefGene,66 xenoRefGene,300 xenoRefGene,342 xenoRefGene,371 regeneron uniprot,1968 region chainCaePb1,162 chainCaeRem2,162 chainCb3,162 chainCe6,160 netCaePb1,85 netCaeRem2,85 netCb3,85 netCe6,83 uniprot,312 regions augustusGene,76 chainCaePb1,96 chainCaeRem2,96 chainCb3,96 chainCe6,94 microsat,14 netCaePb1,40 netCaeRem2,40 netCb3,40 netCe6,39 simpleRepeat,39 spMut,357 tRNAs,499 unipInterest,3 uniprot,240 uniprot,297 uniprot,300 uniprot,328 uniprot,348 uniprot,368 uniprot,384 related augustusGene,242 uniprot,551 relationship est,96 intronEst,171 netCaePb1,344 netCaeRem2,344 netCb3,344 netCe6,342 relative gap,26 netCaePb1,360 netCaeRem2,360 netCb3,360 netCe6,358 release uniprot,1589 releases uniprot,1561 uniprot,1686 relevant est,160 intronEst,235 mrna,106 uniprot,681 remain uniprot,1189 remaining blastCe6SG,191 chainCaePb1,414 chainCaeRem2,414 chainCb3,414 chainCe6,412 remanei chainCaeRem2,2 chainCaeRem2,5 chainCaeRem2,22 chainCaeRem2,57 chainCaeRem2,111 chainCaeRem2,297 chainCaeRem2,351 netCaeRem2,2 netCaeRem2,5 netCaeRem2,22 netCaeRem2,48 removed chainCaePb1,302 chainCaeRem2,302 chainCb3,302 chainCe6,300 uniprot,597 uniprot,1150 rendered tRNAs,346 reorganizing spMut,465 uniprot,1987 repbase rmsk,81 rmsk,93 rmsk,306 rmsk,313 repeat chainCaePb1,444 chainCaeRem2,444 chainCb3,444 chainCe6,442 microsat,83 rmsk,139 rmsk,146 rmsk,197 rmsk,223 rmsk,298 simpleRepeat,47 repeated uniprot,386 uniprot,390 repeating rmsk,2 repeatmasker rmsk,1 rmsk,5 rmsk,19 rmsk,78 rmsk,220 rmsk,251 repeats microsat,6 microsat,9 microsat,35 microsat,58 microsat,63 microsat,86 microsat,93 microsat,106 microsat,117 rmsk,8 rmsk,27 rmsk,41 rmsk,68 rmsk,85 rmsk,123 rmsk,150 rmsk,154 rmsk,156 rmsk,158 rmsk,166 rmsk,262 rmsk,269 simpleRepeat,2 simpleRepeat,5 simpleRepeat,10 simpleRepeat,17 simpleRepeat,20 simpleRepeat,24 simpleRepeat,34 simpleRepeat,77 spMut,10 unipRepeat,1 unipRepeat,3 uniprot,383 uniprot,440 repetitive rmsk,322 uniprot,1400 represent chainCaePb1,94 chainCaePb1,123 chainCaeRem2,94 chainCaeRem2,123 chainCb3,94 chainCb3,123 chainCe6,92 chainCe6,121 est,41 intronEst,52 netCaePb1,132 netCaePb1,137 netCaeRem2,132 netCaeRem2,137 netCb3,132 netCb3,137 netCe6,130 netCe6,135 tRNAs,80 representation quality,100 represented gap,17 gap,118 gap,172 rmsk,49 representing gap,60 reproducibility uniprot,1645 required tRNAs,217 requiring intronEst,88 res chainCaePb1,612 chainCaeRem2,612 chainCb3,612 chainCe6,610 est,729 est,749 intronEst,807 intronEst,827 microsat,127 mrna,446 mrna,466 netCaePb1,525 netCaeRem2,525 netCb3,525 netCe6,523 simpleRepeat,87 spMut,477 tRNAs,383 tRNAs,406 tRNAs,459 tRNAs,502 uniprot,1999 xenoRefGene,310 xenoRefGene,351 xenoRefGene,384 research rmsk,90 researchers spMut,31 residues uniprot,344 resolve uniprot,1357 resolved uniprot,1284 resource spMut,473 spMut,511 uniprot,1995 uniprot,2033 result chainCaePb1,136 chainCaeRem2,136 chainCb3,136 chainCe6,134 uniprot,798 uniprot,1065 uniprot,1170 resulting chainCaePb1,325 chainCaeRem2,325 chainCb3,325 chainCe6,323 uniprot,874 uniprot,1137 uniprot,1308 results uniprot,1463 uniprot,1649 retained uniprot,795 retrieve est,551 intronEst,626 retroposons rmsk,144 reverse est,426 est,460 est,477 intronEst,501 intronEst,535 intronEst,552 review xenoRefGene,64 reviewed xenoRefGene,74 ribosome tRNAs,157 riestra uniprot,1972 rna est,104 est,420 intronEst,179 intronEst,495 rmsk,157 rmsk,160 tRNAs,4 tRNAs,375 tRNAs,398 tRNAs,452 xenoRefGene,30 xenoRefGene,242 xenoRefGene,288 rnas xenoRefGene,219 robert chainCaePb1,502 chainCaeRem2,502 chainCb3,502 chainCe6,500 netCaePb1,458 netCaeRem2,458 netCb3,458 netCe6,456 rmsk,289 tRNAs,351 role uniprot,309 rolling rmsk,171 ross chainCaePb1,442 chainCaeRem2,442 chainCb3,442 chainCe6,440 netCaePb1,444 netCaeRem2,444 netCb3,444 netCe6,442 rotated tRNAs,327 rough tRNAs,258 rrna rmsk,162 run chainCaePb1,380 chainCaeRem2,380 chainCb3,380 chainCe6,378 s augustusGene,104 augustusGene,221 augustusGene,319 blastCe6SG,138 chainCaePb1,537 chainCaePb1,554 chainCaePb1,592 chainCaeRem2,537 chainCaeRem2,554 chainCaeRem2,592 chainCb3,537 chainCb3,554 chainCb3,592 chainCe6,535 chainCe6,552 chainCe6,590 netCaePb1,475 netCaePb1,492 netCaePb1,505 netCaeRem2,475 netCaeRem2,492 netCaeRem2,505 netCb3,475 netCb3,492 netCb3,505 netCe6,473 netCe6,490 netCe6,503 rmsk,18 rmsk,252 spMut,227 tRNAs,479 uniprot,751 uniprot,774 saccharomyces augustusGene,223 same netCaePb1,211 netCaePb1,226 netCaeRem2,211 netCaeRem2,226 netCb3,211 netCb3,226 netCe6,209 netCe6,224 tRNAs,247 uniprot,608 uniprot,612 uniprot,641 uniprot,1173 sample augustusGene,133 sampling augustusGene,129 santa chainCaePb1,477 chainCaeRem2,477 chainCb3,477 chainCe6,475 netCaePb1,419 netCaeRem2,419 netCb3,419 netCe6,417 satellite rmsk,155 scaffold ctgPos2,83 ctgPos2,86 gap,83 gap,98 gap,137 gold,76 gold,79 scaffolds ctgPos2,39 ctgPos2,62 ctgPos2,106 gold,32 gold,55 gold,99 sch chainCaePb1,460 chainCaePb1,570 chainCaeRem2,460 chainCaeRem2,570 chainCb3,460 chainCb3,570 chainCe6,458 chainCe6,568 scheib spMut,490 uniprot,2012 school ctgPos2,129 gap,204 gold,176 schwartz chainCaePb1,433 chainCaePb1,591 chainCaeRem2,433 chainCaeRem2,591 chainCb3,433 chainCb3,591 chainCe6,431 chainCe6,589 netCaePb1,435 netCaePb1,504 netCaeRem2,435 netCaeRem2,504 netCb3,435 netCb3,504 netCe6,433 netCe6,502 sci chainCaePb1,552 chainCaeRem2,552 chainCb3,552 chainCe6,550 netCaePb1,490 netCaeRem2,490 netCb3,490 netCe6,488 science spMut,37 scientific spMut,100 uniprot,37 scientists est,712 intronEst,790 mrna,429 xenoRefGene,293 score quality,20 tRNAs,116 tRNAs,121 tRNAs,259 uniprot,950 uniprot,1116 uniprot,1317 uniprot,1349 uniprot,1491 scores quality,2 quality,7 quality,14 quality,53 quality,88 tRNAs,163 tRNAs,178 tRNAs,198 uniprot,1085 scoring chainCaePb1,37 chainCaePb1,47 chainCaePb1,388 chainCaePb1,405 chainCaePb1,514 chainCaeRem2,37 chainCaeRem2,47 chainCaeRem2,388 chainCaeRem2,405 chainCaeRem2,514 chainCb3,37 chainCb3,47 chainCb3,388 chainCb3,405 chainCb3,514 chainCe6,35 chainCe6,45 chainCe6,386 chainCe6,403 chainCe6,512 tRNAs,294 scott chainCaePb1,432 chainCaeRem2,432 chainCb3,432 chainCe6,430 netCaePb1,434 netCaeRem2,434 netCb3,434 netCe6,432 screens rmsk,22 script spMut,293 uniprot,1549 scrna rmsk,164 search blastCe6SG,173 tRNAs,62 secondary tRNAs,76 tRNAs,236 tRNAs,314 tRNAs,323 tRNAs,343 unipStruct,5 uniprot,361 secreted uniprot,247 section rmsk,104 uniprot,897 sections netCaePb1,301 netCaeRem2,301 netCb3,301 netCe6,299 see augustusGene,42 blastCe6SG,159 intronEst,118 microsat,101 rmsk,278 simpleRepeat,63 spMut,168 uniprot,188 uniprot,526 uniprot,768 uniprot,894 xenoRefGene,209 seeking spMut,51 select xenoRefGene,162 selected est,285 est,301 est,354 intronEst,360 intronEst,376 intronEst,429 mrna,231 mrna,247 mrna,300 uniprot,986 selecting microsat,60 semi-markov augustusGene,117 sep chainCaePb1,557 chainCaeRem2,557 chainCb3,557 chainCe6,555 netCaePb1,495 netCaeRem2,495 netCb3,495 netCe6,493 rmsk,327 seq unipConflict,1 sequence augustusGene,32 augustusGene,70 blastCe6SG,79 chainCaePb1,130 chainCaePb1,517 chainCaeRem2,130 chainCaeRem2,517 chainCb3,130 chainCb3,517 chainCe6,128 chainCe6,515 ctgPos2,97 est,21 est,92 est,390 est,399 est,552 est,690 est,702 est,709 gap,94 gap,168 gold,90 intronEst,22 intronEst,167 intronEst,465 intronEst,474 intronEst,627 intronEst,765 intronEst,780 intronEst,787 mrna,336 mrna,406 mrna,419 mrna,426 netCaePb1,49 netCaeRem2,49 netCb3,49 netCe6,48 rmsk,48 rmsk,62 spMut,210 spMut,513 tRNAs,74 tRNAs,182 tRNAs,380 tRNAs,399 tRNAs,456 unipConflict,4 uniprot,356 uniprot,372 uniprot,381 uniprot,387 uniprot,636 uniprot,967 uniprot,971 uniprot,1134 uniprot,1219 uniprot,1242 uniprot,1379 uniprot,2035 xenoRefGene,277 xenoRefGene,289 xenoRefGene,370 xenoRefGene,375 sequenced chainCaePb1,580 chainCaeRem2,580 chainCb3,580 chainCe6,578 ctgPos2,31 gold,24 sequences blastCe6SG,67 est,32 est,571 est,579 intronEst,43 intronEst,646 intronEst,654 microsat,26 microsat,124 rmsk,24 rmsk,32 simpleRepeat,84 spMut,239 spMut,244 tRNAs,428 uniprot,16 uniprot,85 uniprot,112 uniprot,114 uniprot,131 uniprot,138 uniprot,166 uniprot,195 uniprot,197 uniprot,377 uniprot,673 uniprot,781 uniprot,1103 uniprot,1374 uniprot,1424 uniprot,1608 uniprot,1611 uniprot,1889 xenoRefGene,32 xenoRefGene,348 sequencing ctgPos2,6 gap,6 gc5Base,10 gold,7 netCaePb1,383 netCaeRem2,383 netCb3,383 netCe6,381 quality,5 quality,10 quality,18 server spMut,345 uniprot,1699 uniprot,1745 set blastCe6SG,153 gap,91 gap,101 tRNAs,71 uniprot,838 uniprot,858 uniprot,1287 uniprot,1597 sets augustusGene,158 sf blastCe6SG,161 shaded est,70 mrna,51 shading intronEst,143 rmsk,178 rmsk,209 xenoRefGene,59 short rmsk,124 uniprot,460 uniprot,978 shotgun gap,78 gap,111 gold,159 should est,321 est,604 intronEst,396 intronEst,679 mrna,267 tRNAs,226 show intronEst,31 intronEst,64 uniprot,80 uniprot,227 uniprot,538 xenoRefGene,125 shown est,150 gold,136 intronEst,225 microsat,48 mrna,96 uniprot,504 uniprot,628 uniprot,646 uniprot,1580 uniprot,1631 shows augustusGene,15 augustusGene,108 chainCaePb1,18 chainCaeRem2,18 chainCb3,18 chainCe6,17 ctgPos2,10 est,15 gc5Base,16 gold,11 intronEst,16 mrna,16 netCaePb1,18 netCaeRem2,18 netCb3,18 netCe6,17 quality,16 spMut,78 uniprot,14 uniprot,484 xenoRefGene,14 side est,567 gap,35 intronEst,642 signal augustusGene,48 augustusGene,63 unipLocSignal,1 unipLocSignal,4 uniprot,238 uniprot,476 uniprot,511 uniprot,564 signs intronEst,32 similar uniprot,1403 simple microsat,57 microsat,85 rmsk,149 simpleRepeat,1 simpleRepeat,3 simpleRepeat,15 simultaneously chainCaePb1,61 chainCaeRem2,61 chainCb3,61 chainCe6,59 since chainCaePb1,294 chainCaeRem2,294 chainCb3,294 chainCe6,292 uniprot,1383 sine rmsk,128 sines tRNAs,150 single blastCe6SG,106 chainCaePb1,88 chainCaePb1,97 chainCaePb1,349 chainCaePb1,355 chainCaeRem2,88 chainCaeRem2,97 chainCaeRem2,349 chainCaeRem2,355 chainCb3,88 chainCb3,97 chainCb3,349 chainCb3,355 chainCe6,86 chainCe6,95 chainCe6,347 chainCe6,353 ctgPos2,65 est,601 est,654 gold,58 intronEst,676 intronEst,729 mrna,370 spMut,159 uniprot,141 xenoRefGene,241 single-lined chainCaePb1,171 chainCaeRem2,171 chainCb3,171 chainCe6,169 single-read est,31 intronEst,42 sites augustusGene,54 augustusGene,59 uniprot,342 uniprot,354 uniprot,578 uniprot,585 size blastCe6SG,97 ctgPos2,70 gold,63 sizes gap,129 skepticism est,609 intronEst,684 sm xenoRefGene,325 smit chainCaePb1,595 chainCaeRem2,595 chainCb3,595 chainCe6,593 netCaePb1,508 netCaeRem2,508 netCb3,508 netCe6,506 rmsk,17 rmsk,288 snrna rmsk,163 so netCaePb1,124 netCaeRem2,124 netCb3,124 netCe6,122 tRNAs,277 uniprot,1135 uniprot,1430 soft-masked rmsk,264 software rmsk,221 some est,158 est,523 est,539 est,642 intronEst,233 intronEst,598 intronEst,614 intronEst,717 mrna,104 uniprot,318 sometimes simpleRepeat,50 uniprot,983 sorted netCaePb1,270 netCaeRem2,270 netCb3,270 netCe6,268 uniprot,556 source spMut,213 spMut,299 spMut,376 spMut,390 uniprot,820 uniprot,1545 uniprot,1774 uniprot,1788 space spMut,468 uniprot,1990 spaces gold,138 span netCaePb1,83 netCaeRem2,83 netCb3,83 netCe6,81 specialized simpleRepeat,29 species augustusGene,166 augustusGene,173 augustusGene,181 augustusGene,186 augustusGene,200 augustusGene,229 augustusGene,244 chainCaePb1,78 chainCaePb1,133 chainCaePb1,152 chainCaeRem2,78 chainCaeRem2,133 chainCaeRem2,152 chainCb3,78 chainCb3,133 chainCb3,152 chainCe6,76 chainCe6,131 chainCe6,150 netCaePb1,389 netCaeRem2,389 netCb3,389 netCe6,387 species-specific augustusGene,156 specific est,197 intronEst,272 mrna,143 simpleRepeat,53 tRNAs,70 tRNAs,233 tRNAs,270 splice augustusGene,53 uniprot,144 spliced intronEst,1 intronEst,9 intronEst,60 splicing augustusGene,123 intronEst,34 intronEst,89 split chainCaePb1,300 chainCaeRem2,300 chainCb3,300 chainCe6,298 spmut.bb spMut,355 spMut,421 sr tRNAs,395 tRNAs,443 src spMut,305 staff spMut,105 uniprot,42 uniprot,1965 stage uniprot,1228 stanke augustusGene,103 augustusGene,251 augustusGene,284 augustusGene,286 augustusGene,316 start augustusGene,58 est,531 intronEst,606 spMut,424 uniprot,125 uniprot,209 uniprot,1821 state chainCaePb1,427 chainCaeRem2,427 chainCb3,427 chainCe6,425 netCaePb1,429 netCaeRem2,429 netCb3,429 netCe6,427 statistical augustusGene,47 stdout spMut,428 uniprot,1825 stefanie augustusGene,267 step uniprot,901 uniprot,1155 uniprot,1330 still tRNAs,142 storage chainCaePb1,495 chainCaeRem2,495 chainCb3,495 chainCe6,493 netCaePb1,451 netCaeRem2,451 netCb3,451 netCe6,449 stored spMut,333 uniprot,1733 strand chainCaePb1,207 chainCaeRem2,207 chainCb3,207 chainCe6,205 est,77 intronEst,152 strands uniprot,365 strategy uniprot,1120 uniprot,1193 structural tRNAs,184 structure augustusGene,113 spMut,515 tRNAs,77 tRNAs,237 tRNAs,315 unipStruct,1 unipStruct,6 uniprot,362 uniprot,2037 structures augustusGene,164 tRNAs,324 tRNAs,344 students spMut,35 studies tRNAs,272 studying netCaePb1,43 netCaeRem2,43 netCb3,43 netCe6,42 subcellular uniprot,553 submitted est,704 intronEst,782 mrna,421 submodel augustusGene,331 subsections chainCaePb1,370 chainCaeRem2,370 chainCb3,370 chainCe6,368 subset est,136 intronEst,211 microsat,54 mrna,82 substantial chainCaePb1,129 chainCaeRem2,129 chainCb3,129 chainCe6,127 substitutions spMut,7 subtrack uniprot,411 subtracks uniprot,59 uniprot,72 uniprot,520 uniprot,548 successful est,561 intronEst,636 such netCaePb1,350 netCaeRem2,350 netCb3,350 netCe6,348 uniprot,306 suffix uniprot,1255 suitable uniprot,1868 supercontig gap,82 gap,97 gold,115 supercontigs ctgPos2,17 gap,140 gap,188 gold,114 gold,135 suppl augustusGene,336 supported gap,40 sure uniprot,1407 swiss-prot spMut,503 uniprot,2025 swissprot spMut,4 spMut,92 spMut,114 unipAliSwissprot,1 unipAliSwissprot,6 uniprot,3 uniprot,24 uniprot,31 uniprot,76 uniprot,109 uniprot,116 uniprot,127 uniprot,414 uniprot,454 uniprot,495 uniprot,623 uniprot,703 uniprot,1373 symp chainCaePb1,520 chainCaeRem2,520 chainCb3,520 chainCe6,518 syn netCaePb1,207 netCaeRem2,207 netCb3,207 netCe6,205 syntenic netCaePb1,357 netCaeRem2,357 netCb3,357 netCe6,355 syntenically augustusGene,297 system chainCaePb1,38 chainCaeRem2,38 chainCb3,38 chainCe6,36 spMut,386 uniprot,1353 uniprot,1784 systems chainCaePb1,48 chainCaeRem2,48 chainCb3,48 chainCe6,46 t xenoRefGene,365 t-123-31-11491 chainCaePb1,403 chainCaeRem2,403 chainCb3,403 chainCe6,401 table augustusGene,225 est,222 est,225 est,244 intronEst,297 intronEst,300 intronEst,319 mrna,168 mrna,171 mrna,190 spMut,320 uniprot,1720 tables uniprot,1301 tags est,22 intronEst,23 tail est,472 intronEst,547 taken est,443 gap,132 intronEst,518 xenoRefGene,26 tandem microsat,92 microsat,105 microsat,116 simpleRepeat,4 simpleRepeat,16 simpleRepeat,23 simpleRepeat,76 task est,164 intronEst,239 mrna,110 tatusova xenoRefGene,364 tblastn blastCe6SG,10 blastCe6SG,19 blastCe6SG,82 blastCe6SG,145 uniprot,1476 techniques est,537 intronEst,612 temperature augustusGene,141 ten rmsk,119 tend microsat,37 term est,171 intronEst,246 mrna,117 terminal rmsk,138 terms est,215 intronEst,290 mrna,161 text est,178 est,218 est,258 intronEst,253 intronEst,293 intronEst,333 mrna,124 mrna,164 mrna,204 uniprot,1763 than blastCe6SG,113 chainCaePb1,43 chainCaeRem2,43 chainCb3,43 chainCe6,41 est,272 est,544 intronEst,347 intronEst,619 mrna,218 netCaePb1,196 netCaeRem2,196 netCb3,196 netCe6,194 rmsk,237 tRNAs,92 xenoRefGene,23 xenoRefGene,235 thanks augustusGene,248 rmsk,285 uniprot,1974 that blastCe6SG,68 blastCe6SG,123 chainCaePb1,39 chainCaePb1,101 chainCaePb1,127 chainCaePb1,277 chainCaePb1,290 chainCaeRem2,39 chainCaeRem2,101 chainCaeRem2,127 chainCaeRem2,277 chainCaeRem2,290 chainCb3,39 chainCb3,101 chainCb3,127 chainCb3,277 chainCb3,290 chainCe6,37 chainCe6,99 chainCe6,125 chainCe6,275 chainCe6,288 est,39 est,66 est,120 est,227 est,251 est,288 est,303 est,320 est,344 est,362 est,379 est,394 est,627 est,648 intronEst,6 intronEst,30 intronEst,50 intronEst,74 intronEst,195 intronEst,302 intronEst,326 intronEst,363 intronEst,378 intronEst,395 intronEst,419 intronEst,437 intronEst,454 intronEst,469 intronEst,702 intronEst,723 microsat,15 mrna,47 mrna,66 mrna,173 mrna,197 mrna,234 mrna,249 mrna,266 mrna,290 mrna,308 mrna,325 netCaePb1,82 netCaePb1,104 netCaePb1,320 netCaePb1,331 netCaeRem2,82 netCaeRem2,104 netCaeRem2,320 netCaeRem2,331 netCb3,82 netCb3,104 netCb3,320 netCb3,331 netCe6,80 netCe6,102 netCe6,318 netCe6,329 rmsk,42 rmsk,231 rmsk,239 spMut,222 spMut,338 tRNAs,29 tRNAs,79 tRNAs,186 tRNAs,284 tRNAs,296 uniprot,167 uniprot,301 uniprot,696 uniprot,734 uniprot,745 uniprot,999 uniprot,1012 uniprot,1169 uniprot,1408 uniprot,1602 uniprot,1624 uniprot,1738 uniprot,1866 xenoRefGene,148 the augustusGene,20 augustusGene,25 augustusGene,30 augustusGene,38 augustusGene,61 augustusGene,69 augustusGene,81 augustusGene,109 augustusGene,143 augustusGene,165 augustusGene,172 augustusGene,177 augustusGene,185 augustusGene,240 augustusGene,250 augustusGene,255 augustusGene,258 augustusGene,261 augustusGene,272 augustusGene,275 blastCe6SG,22 blastCe6SG,25 blastCe6SG,38 blastCe6SG,42 blastCe6SG,51 blastCe6SG,56 blastCe6SG,64 blastCe6SG,76 blastCe6SG,81 blastCe6SG,85 blastCe6SG,105 blastCe6SG,116 blastCe6SG,128 blastCe6SG,136 blastCe6SG,149 blastCe6SG,190 chainCaePb1,30 chainCaePb1,79 chainCaePb1,92 chainCaePb1,109 chainCaePb1,117 chainCaePb1,164 chainCaePb1,168 chainCaePb1,194 chainCaePb1,200 chainCaePb1,205 chainCaePb1,213 chainCaePb1,225 chainCaePb1,240 chainCaePb1,246 chainCaePb1,249 chainCaePb1,264 chainCaePb1,270 chainCaePb1,274 chainCaePb1,295 chainCaePb1,304 chainCaePb1,306 chainCaePb1,317 chainCaePb1,324 chainCaePb1,333 chainCaePb1,336 chainCaePb1,368 chainCaePb1,373 chainCaePb1,382 chainCaePb1,386 chainCaePb1,393 chainCaePb1,413 chainCaePb1,449 chainCaePb1,466 chainCaePb1,472 chainCaePb1,490 chainCaePb1,497 chainCaePb1,544 chainCaeRem2,30 chainCaeRem2,79 chainCaeRem2,92 chainCaeRem2,109 chainCaeRem2,117 chainCaeRem2,164 chainCaeRem2,168 chainCaeRem2,194 chainCaeRem2,200 chainCaeRem2,205 chainCaeRem2,213 chainCaeRem2,225 chainCaeRem2,240 chainCaeRem2,246 chainCaeRem2,249 chainCaeRem2,264 chainCaeRem2,270 chainCaeRem2,274 chainCaeRem2,295 chainCaeRem2,304 chainCaeRem2,306 chainCaeRem2,317 chainCaeRem2,324 chainCaeRem2,333 chainCaeRem2,336 chainCaeRem2,368 chainCaeRem2,373 chainCaeRem2,382 chainCaeRem2,386 chainCaeRem2,393 chainCaeRem2,413 chainCaeRem2,449 chainCaeRem2,466 chainCaeRem2,472 chainCaeRem2,490 chainCaeRem2,497 chainCaeRem2,544 chainCb3,30 chainCb3,79 chainCb3,92 chainCb3,109 chainCb3,117 chainCb3,164 chainCb3,168 chainCb3,194 chainCb3,200 chainCb3,205 chainCb3,213 chainCb3,225 chainCb3,240 chainCb3,246 chainCb3,249 chainCb3,264 chainCb3,270 chainCb3,274 chainCb3,295 chainCb3,304 chainCb3,306 chainCb3,317 chainCb3,324 chainCb3,333 chainCb3,336 chainCb3,368 chainCb3,373 chainCb3,382 chainCb3,386 chainCb3,393 chainCb3,413 chainCb3,449 chainCb3,466 chainCb3,472 chainCb3,490 chainCb3,497 chainCb3,544 chainCe6,28 chainCe6,77 chainCe6,90 chainCe6,107 chainCe6,115 chainCe6,162 chainCe6,166 chainCe6,192 chainCe6,198 chainCe6,203 chainCe6,211 chainCe6,223 chainCe6,238 chainCe6,244 chainCe6,247 chainCe6,262 chainCe6,268 chainCe6,272 chainCe6,293 chainCe6,302 chainCe6,304 chainCe6,315 chainCe6,322 chainCe6,331 chainCe6,334 chainCe6,366 chainCe6,371 chainCe6,380 chainCe6,384 chainCe6,391 chainCe6,411 chainCe6,447 chainCe6,464 chainCe6,470 chainCe6,488 chainCe6,495 chainCe6,542 ctgPos2,11 ctgPos2,16 ctgPos2,19 ctgPos2,23 ctgPos2,27 ctgPos2,55 ctgPos2,59 ctgPos2,84 ctgPos2,96 ctgPos2,115 ctgPos2,126 ctgPos2,134 est,27 est,53 est,64 est,76 est,80 est,83 est,86 est,89 est,98 est,103 est,111 est,126 est,130 est,140 est,152 est,162 est,167 est,177 est,182 est,189 est,200 est,203 est,206 est,211 est,221 est,224 est,230 est,240 est,247 est,256 est,266 est,276 est,308 est,315 est,329 est,338 est,346 est,355 est,364 est,381 est,388 est,397 est,408 est,431 est,445 est,459 est,470 est,476 est,486 est,490 est,501 est,505 est,512 est,521 est,525 est,535 est,555 est,581 est,587 est,622 est,628 est,660 est,663 est,679 est,688 est,706 est,744 gap,13 gap,25 gap,31 gap,37 gap,57 gap,61 gap,66 gap,75 gap,108 gap,125 gap,144 gap,155 gap,178 gap,181 gap,190 gap,201 gap,209 gc5Base,12 gc5Base,17 gc5Base,53 gc5Base,57 gc5Base,68 gc5Base,72 gold,12 gold,16 gold,20 gold,48 gold,52 gold,77 gold,89 gold,113 gold,120 gold,134 gold,140 gold,162 gold,173 gold,181 intronEst,28 intronEst,38 intronEst,90 intronEst,95 intronEst,102 intronEst,119 intronEst,131 intronEst,151 intronEst,155 intronEst,158 intronEst,161 intronEst,164 intronEst,173 intronEst,178 intronEst,186 intronEst,201 intronEst,205 intronEst,215 intronEst,227 intronEst,237 intronEst,242 intronEst,252 intronEst,257 intronEst,264 intronEst,275 intronEst,278 intronEst,281 intronEst,286 intronEst,296 intronEst,299 intronEst,305 intronEst,315 intronEst,322 intronEst,331 intronEst,341 intronEst,351 intronEst,383 intronEst,390 intronEst,404 intronEst,413 intronEst,421 intronEst,430 intronEst,439 intronEst,456 intronEst,463 intronEst,472 intronEst,483 intronEst,506 intronEst,520 intronEst,534 intronEst,545 intronEst,551 intronEst,561 intronEst,565 intronEst,576 intronEst,580 intronEst,587 intronEst,596 intronEst,600 intronEst,610 intronEst,630 intronEst,656 intronEst,662 intronEst,697 intronEst,703 intronEst,735 intronEst,738 intronEst,754 intronEst,763 intronEst,784 intronEst,822 microsat,43 microsat,46 microsat,56 microsat,82 microsat,84 microsat,91 mrna,13 mrna,25 mrna,34 mrna,45 mrna,57 mrna,72 mrna,76 mrna,86 mrna,98 mrna,108 mrna,113 mrna,123 mrna,128 mrna,135 mrna,146 mrna,149 mrna,152 mrna,157 mrna,167 mrna,170 mrna,176 mrna,186 mrna,193 mrna,202 mrna,212 mrna,222 mrna,254 mrna,261 mrna,275 mrna,284 mrna,292 mrna,301 mrna,310 mrna,327 mrna,334 mrna,345 mrna,362 mrna,365 mrna,376 mrna,379 mrna,395 mrna,404 mrna,410 mrna,423 mrna,461 netCaePb1,19 netCaePb1,30 netCaePb1,46 netCaePb1,56 netCaePb1,72 netCaePb1,78 netCaePb1,92 netCaePb1,110 netCaePb1,127 netCaePb1,130 netCaePb1,135 netCaePb1,148 netCaePb1,161 netCaePb1,163 netCaePb1,170 netCaePb1,173 netCaePb1,180 netCaePb1,186 netCaePb1,199 netCaePb1,210 netCaePb1,214 netCaePb1,217 netCaePb1,225 netCaePb1,229 netCaePb1,235 netCaePb1,246 netCaePb1,249 netCaePb1,260 netCaePb1,264 netCaePb1,272 netCaePb1,276 netCaePb1,280 netCaePb1,288 netCaePb1,333 netCaePb1,343 netCaePb1,362 netCaePb1,365 netCaePb1,377 netCaePb1,401 netCaePb1,406 netCaePb1,415 netCaePb1,446 netCaePb1,453 netCaePb1,482 netCaeRem2,19 netCaeRem2,30 netCaeRem2,46 netCaeRem2,56 netCaeRem2,72 netCaeRem2,78 netCaeRem2,92 netCaeRem2,110 netCaeRem2,127 netCaeRem2,130 netCaeRem2,135 netCaeRem2,148 netCaeRem2,161 netCaeRem2,163 netCaeRem2,170 netCaeRem2,173 netCaeRem2,180 netCaeRem2,186 netCaeRem2,199 netCaeRem2,210 netCaeRem2,214 netCaeRem2,217 netCaeRem2,225 netCaeRem2,229 netCaeRem2,235 netCaeRem2,246 netCaeRem2,249 netCaeRem2,260 netCaeRem2,264 netCaeRem2,272 netCaeRem2,276 netCaeRem2,280 netCaeRem2,288 netCaeRem2,333 netCaeRem2,343 netCaeRem2,362 netCaeRem2,365 netCaeRem2,377 netCaeRem2,401 netCaeRem2,406 netCaeRem2,415 netCaeRem2,446 netCaeRem2,453 netCaeRem2,482 netCb3,19 netCb3,30 netCb3,46 netCb3,56 netCb3,72 netCb3,78 netCb3,92 netCb3,110 netCb3,127 netCb3,130 netCb3,135 netCb3,148 netCb3,161 netCb3,163 netCb3,170 netCb3,173 netCb3,180 netCb3,186 netCb3,199 netCb3,210 netCb3,214 netCb3,217 netCb3,225 netCb3,229 netCb3,235 netCb3,246 netCb3,249 netCb3,260 netCb3,264 netCb3,272 netCb3,276 netCb3,280 netCb3,288 netCb3,333 netCb3,343 netCb3,362 netCb3,365 netCb3,377 netCb3,401 netCb3,406 netCb3,415 netCb3,446 netCb3,453 netCb3,482 netCe6,18 netCe6,29 netCe6,45 netCe6,55 netCe6,70 netCe6,76 netCe6,90 netCe6,108 netCe6,125 netCe6,128 netCe6,133 netCe6,146 netCe6,159 netCe6,161 netCe6,168 netCe6,171 netCe6,178 netCe6,184 netCe6,197 netCe6,208 netCe6,212 netCe6,215 netCe6,223 netCe6,227 netCe6,233 netCe6,244 netCe6,247 netCe6,258 netCe6,262 netCe6,270 netCe6,274 netCe6,278 netCe6,286 netCe6,331 netCe6,341 netCe6,360 netCe6,363 netCe6,375 netCe6,399 netCe6,404 netCe6,413 netCe6,444 netCe6,451 netCe6,480 quality,12 quality,17 quality,25 quality,27 quality,33 quality,36 quality,39 quality,48 quality,51 quality,69 quality,73 quality,82 quality,86 quality,94 quality,98 rmsk,33 rmsk,40 rmsk,46 rmsk,60 rmsk,66 rmsk,75 rmsk,80 rmsk,87 rmsk,102 rmsk,174 rmsk,180 rmsk,184 rmsk,199 rmsk,201 rmsk,206 rmsk,208 rmsk,214 rmsk,219 rmsk,244 rmsk,250 rmsk,279 rmsk,295 simpleRepeat,60 spMut,41 spMut,48 spMut,79 spMut,90 spMut,94 spMut,103 spMut,119 spMut,130 spMut,149 spMut,169 spMut,191 spMut,197 spMut,211 spMut,218 spMut,225 spMut,234 spMut,260 spMut,264 spMut,270 spMut,273 spMut,276 spMut,285 spMut,291 spMut,297 spMut,311 spMut,319 spMut,323 spMut,329 spMut,343 spMut,346 spMut,359 spMut,375 spMut,398 spMut,466 spMut,470 spMut,502 spMut,507 tRNAs,52 tRNAs,114 tRNAs,139 tRNAs,156 tRNAs,204 tRNAs,216 tRNAs,246 tRNAs,317 tRNAs,321 tRNAs,336 tRNAs,363 uniprot,22 uniprot,40 uniprot,53 uniprot,69 uniprot,81 uniprot,87 uniprot,94 uniprot,102 uniprot,119 uniprot,184 uniprot,202 uniprot,215 uniprot,233 uniprot,259 uniprot,270 uniprot,281 uniprot,308 uniprot,379 uniprot,410 uniprot,421 uniprot,428 uniprot,444 uniprot,463 uniprot,485 uniprot,493 uniprot,510 uniprot,527 uniprot,534 uniprot,539 uniprot,543 uniprot,547 uniprot,562 uniprot,571 uniprot,607 uniprot,640 uniprot,649 uniprot,668 uniprot,698 uniprot,748 uniprot,785 uniprot,789 uniprot,791 uniprot,797 uniprot,802 uniprot,810 uniprot,812 uniprot,819 uniprot,832 uniprot,836 uniprot,855 uniprot,873 uniprot,883 uniprot,903 uniprot,913 uniprot,923 uniprot,927 uniprot,935 uniprot,944 uniprot,947 uniprot,953 uniprot,961 uniprot,969 uniprot,1009 uniprot,1036 uniprot,1039 uniprot,1054 uniprot,1090 uniprot,1112 uniprot,1126 uniprot,1136 uniprot,1140 uniprot,1156 uniprot,1172 uniprot,1212 uniprot,1221 uniprot,1243 uniprot,1253 uniprot,1267 uniprot,1273 uniprot,1278 uniprot,1294 uniprot,1303 uniprot,1307 uniprot,1321 uniprot,1332 uniprot,1339 uniprot,1358 uniprot,1372 uniprot,1376 uniprot,1384 uniprot,1388 uniprot,1409 uniprot,1414 uniprot,1428 uniprot,1431 uniprot,1462 uniprot,1508 uniprot,1512 uniprot,1519 uniprot,1522 uniprot,1527 uniprot,1535 uniprot,1547 uniprot,1574 uniprot,1582 uniprot,1588 uniprot,1592 uniprot,1595 uniprot,1606 uniprot,1609 uniprot,1612 uniprot,1618 uniprot,1621 uniprot,1628 uniprot,1640 uniprot,1664 uniprot,1667 uniprot,1678 uniprot,1681 uniprot,1701 uniprot,1707 uniprot,1711 uniprot,1719 uniprot,1723 uniprot,1729 uniprot,1743 uniprot,1746 uniprot,1753 uniprot,1773 uniprot,1796 uniprot,1857 uniprot,1861 uniprot,1893 uniprot,1963 uniprot,1988 uniprot,1992 uniprot,2024 uniprot,2029 xenoRefGene,28 xenoRefGene,35 xenoRefGene,50 xenoRefGene,57 xenoRefGene,61 xenoRefGene,65 xenoRefGene,76 xenoRefGene,91 xenoRefGene,94 xenoRefGene,97 xenoRefGene,111 xenoRefGene,117 xenoRefGene,122 xenoRefGene,127 xenoRefGene,135 xenoRefGene,163 xenoRefGene,168 xenoRefGene,183 xenoRefGene,198 xenoRefGene,211 xenoRefGene,218 xenoRefGene,223 xenoRefGene,247 xenoRefGene,250 xenoRefGene,266 xenoRefGene,275 xenoRefGene,298 their uniprot,62 uniprot,723 uniprot,1101 them netCaePb1,295 netCaeRem2,295 netCb3,295 netCe6,293 rmsk,277 tRNAs,280 uniprot,20 uniprot,173 uniprot,483 then chainCaePb1,320 chainCaePb1,379 chainCaeRem2,320 chainCaeRem2,379 chainCb3,320 chainCb3,379 chainCe6,318 chainCe6,377 netCaePb1,284 netCaePb1,369 netCaeRem2,284 netCaeRem2,369 netCb3,284 netCb3,369 netCe6,282 netCe6,367 spMut,248 spMut,267 tRNAs,54 uniprot,1083 uniprot,1516 there ctgPos2,35 est,590 gold,28 intronEst,665 spMut,140 uniprot,705 uniprot,1092 therefore uniprot,968 uniprot,1145 these augustusGene,95 augustusGene,190 chainCaePb1,62 chainCaePb1,391 chainCaeRem2,62 chainCaeRem2,391 chainCb3,62 chainCb3,391 chainCe6,60 chainCe6,389 est,558 gap,116 gap,170 intronEst,633 microsat,24 netCaePb1,97 netCaeRem2,97 netCb3,97 netCe6,95 rmsk,205 rmsk,228 rmsk,232 simpleRepeat,33 tRNAs,56 tRNAs,223 tRNAs,257 tRNAs,303 tRNAs,359 uniprot,99 uniprot,130 uniprot,1160 they chainCaePb1,236 chainCaeRem2,236 chainCb3,236 chainCe6,234 tRNAs,188 tRNAs,267 uniprot,179 thibaud-nissen xenoRefGene,326 this augustusGene,13 augustusGene,106 augustusGene,224 blastCe6SG,16 blastCe6SG,196 chainCaePb1,16 chainCaePb1,134 chainCaePb1,419 chainCaeRem2,16 chainCaeRem2,134 chainCaeRem2,419 chainCb3,16 chainCb3,134 chainCb3,419 chainCe6,15 chainCe6,132 chainCe6,417 ctgPos2,8 est,13 est,50 est,115 est,142 est,367 est,404 est,563 est,599 est,612 est,694 gap,8 gap,22 gap,63 gap,85 gap,153 gc5Base,38 gc5Base,77 gold,9 gold,110 gold,148 intronEst,14 intronEst,128 intronEst,190 intronEst,217 intronEst,442 intronEst,479 intronEst,638 intronEst,674 intronEst,687 intronEst,769 intronEst,772 microsat,11 microsat,50 microsat,99 mrna,31 mrna,61 mrna,88 mrna,313 mrna,341 netCaePb1,16 netCaePb1,52 netCaePb1,84 netCaePb1,310 netCaeRem2,16 netCaeRem2,52 netCaeRem2,84 netCaeRem2,310 netCb3,16 netCb3,52 netCb3,84 netCb3,310 netCe6,15 netCe6,51 netCe6,82 netCe6,308 quality,54 rmsk,10 rmsk,51 rmsk,114 rmsk,303 simpleRepeat,12 simpleRepeat,31 spMut,13 spMut,76 spMut,146 spMut,279 spMut,351 spMut,447 tRNAs,14 tRNAs,134 uniprot,12 uniprot,134 uniprot,149 uniprot,218 uniprot,220 uniprot,653 uniprot,663 uniprot,871 uniprot,878 uniprot,1018 uniprot,1058 uniprot,1063 uniprot,1248 uniprot,1259 uniprot,1352 uniprot,1447 uniprot,1530 uniprot,1553 uniprot,1562 uniprot,1657 uniprot,1674 uniprot,1688 uniprot,1939 xenoRefGene,12 xenoRefGene,38 xenoRefGene,47 xenoRefGene,85 xenoRefGene,140 xenoRefGene,179 xenoRefGene,215 xenoRefGene,281 those est,360 est,393 intronEst,435 intronEst,468 microsat,62 mrna,306 rmsk,238 tRNAs,176 uniprot,729 xenoRefGene,229 thousands chainCaePb1,211 chainCaeRem2,211 chainCb3,211 chainCe6,209 three uniprot,1227 three-step uniprot,989 threshold chainCaePb1,408 chainCaeRem2,408 chainCb3,408 chainCe6,406 through gap,56 rmsk,268 spMut,272 uniprot,98 uniprot,133 uniprot,633 uniprot,804 uniprot,1521 xenoRefGene,90 time netCaePb1,293 netCaeRem2,293 netCb3,293 netCe6,291 tissue est,207 est,242 est,257 intronEst,282 intronEst,317 intronEst,332 mrna,153 mrna,188 mrna,203 tissues est,250 intronEst,325 mrna,196 tm tRNAs,369 tRNAs,441 to augustusGene,115 augustusGene,170 augustusGene,249 augustusGene,301 blastCe6SG,50 blastCe6SG,59 blastCe6SG,194 chainCaePb1,29 chainCaePb1,105 chainCaePb1,176 chainCaePb1,188 chainCaePb1,227 chainCaePb1,238 chainCaePb1,243 chainCaePb1,255 chainCaePb1,261 chainCaePb1,284 chainCaePb1,384 chainCaeRem2,29 chainCaeRem2,105 chainCaeRem2,176 chainCaeRem2,188 chainCaeRem2,227 chainCaeRem2,238 chainCaeRem2,243 chainCaeRem2,255 chainCaeRem2,261 chainCaeRem2,284 chainCaeRem2,384 chainCb3,29 chainCb3,105 chainCb3,176 chainCb3,188 chainCb3,227 chainCb3,238 chainCb3,243 chainCb3,255 chainCb3,261 chainCb3,284 chainCb3,384 chainCe6,27 chainCe6,103 chainCe6,174 chainCe6,186 chainCe6,225 chainCe6,236 chainCe6,241 chainCe6,253 chainCe6,259 chainCe6,282 chainCe6,382 ctgPos2,14 ctgPos2,32 est,97 est,124 est,161 est,165 est,180 est,187 est,191 est,209 est,229 est,236 est,324 est,373 est,383 est,407 est,416 est,485 est,550 est,610 est,705 gap,162 gc5Base,48 gold,25 intronEst,57 intronEst,172 intronEst,199 intronEst,236 intronEst,240 intronEst,255 intronEst,262 intronEst,266 intronEst,284 intronEst,304 intronEst,311 intronEst,399 intronEst,448 intronEst,458 intronEst,482 intronEst,491 intronEst,560 intronEst,625 intronEst,685 intronEst,783 microsat,18 microsat,38 microsat,121 mrna,70 mrna,107 mrna,111 mrna,126 mrna,133 mrna,137 mrna,155 mrna,175 mrna,182 mrna,270 mrna,319 mrna,329 mrna,344 mrna,422 netCaePb1,143 netCaePb1,157 netCaePb1,241 netCaePb1,286 netCaePb1,298 netCaePb1,338 netCaePb1,361 netCaePb1,371 netCaeRem2,143 netCaeRem2,157 netCaeRem2,241 netCaeRem2,286 netCaeRem2,298 netCaeRem2,338 netCaeRem2,361 netCaeRem2,371 netCb3,143 netCb3,157 netCb3,241 netCb3,286 netCb3,298 netCb3,338 netCb3,361 netCb3,371 netCe6,141 netCe6,155 netCe6,239 netCe6,284 netCe6,296 netCe6,336 netCe6,359 netCe6,369 quality,44 quality,64 rmsk,118 rmsk,226 rmsk,274 rmsk,286 rmsk,301 simpleRepeat,81 spMut,47 spMut,62 spMut,73 spMut,156 spMut,167 spMut,242 spMut,250 spMut,269 spMut,404 spMut,431 tRNAs,44 tRNAs,66 tRNAs,127 tRNAs,170 tRNAs,219 tRNAs,251 unipAliSwissprot,8 unipAliTrembl,8 uniprot,27 uniprot,86 uniprot,101 uniprot,118 uniprot,201 uniprot,214 uniprot,226 uniprot,245 uniprot,492 uniprot,525 uniprot,552 uniprot,559 uniprot,658 uniprot,682 uniprot,764 uniprot,784 uniprot,801 uniprot,849 uniprot,917 uniprot,920 uniprot,955 uniprot,974 uniprot,1008 uniprot,1088 uniprot,1196 uniprot,1215 uniprot,1220 uniprot,1247 uniprot,1285 uniprot,1336 uniprot,1356 uniprot,1369 uniprot,1405 uniprot,1413 uniprot,1460 uniprot,1473 uniprot,1478 uniprot,1493 uniprot,1518 uniprot,1551 uniprot,1676 uniprot,1761 uniprot,1802 uniprot,1828 uniprot,1846 uniprot,1851 uniprot,1856 uniprot,1884 uniprot,1890 uniprot,1975 xenoRefGene,115 xenoRefGene,151 xenoRefGene,158 xenoRefGene,182 xenoRefGene,208 together blastCe6SG,92 chainCaePb1,85 chainCaeRem2,85 chainCb3,85 chainCe6,83 tolerate chainCaePb1,52 chainCaeRem2,52 chainCb3,52 chainCe6,50 tolerated uniprot,1257 tool blastCe6SG,152 blastCe6SG,174 est,747 intronEst,825 mrna,464 spMut,368 spMut,399 uniprot,1766 uniprot,1797 xenoRefGene,308 tools rmsk,296 uniprot,1873 top netCaePb1,198 netCaeRem2,198 netCb3,198 netCe6,196 uniprot,1304 uniprot,1340 uniprot,1489 xenoRefGene,95 top-level netCaePb1,73 netCaePb1,93 netCaeRem2,73 netCaeRem2,93 netCb3,73 netCb3,93 netCe6,71 netCe6,91 top-scoring uniprot,792 topological uniprot,330 track augustusGene,14 augustusGene,107 blastCe6SG,17 blastCe6SG,47 blastCe6SG,197 chainCaePb1,17 chainCaePb1,81 chainCaePb1,257 chainCaePb1,420 chainCaeRem2,17 chainCaeRem2,81 chainCaeRem2,257 chainCaeRem2,420 chainCb3,17 chainCb3,81 chainCb3,257 chainCb3,420 chainCe6,16 chainCe6,79 chainCe6,255 chainCe6,418 ctgPos2,9 est,14 est,51 est,116 est,141 est,153 est,368 est,613 est,695 gap,9 gap,23 gc5Base,15 gc5Base,39 gold,10 gold,111 gold,149 intronEst,15 intronEst,123 intronEst,129 intronEst,191 intronEst,216 intronEst,228 intronEst,443 intronEst,688 intronEst,770 intronEst,773 microsat,12 microsat,51 microsat,59 microsat,87 mrna,15 mrna,32 mrna,62 mrna,87 mrna,99 mrna,314 mrna,412 netCaePb1,17 netCaeRem2,17 netCb3,17 netCe6,16 quality,15 quality,34 quality,55 rmsk,11 rmsk,52 rmsk,115 rmsk,304 simpleRepeat,13 spMut,14 spMut,77 spMut,352 spMut,448 tRNAs,15 uniprot,13 uniprot,104 uniprot,150 uniprot,219 uniprot,221 uniprot,234 uniprot,422 uniprot,429 uniprot,576 uniprot,654 uniprot,710 uniprot,1004 uniprot,1208 uniprot,1277 uniprot,1554 uniprot,1563 uniprot,1583 uniprot,1658 uniprot,1671 uniprot,1689 uniprot,1713 uniprot,1754 uniprot,1940 xenoRefGene,13 xenoRefGene,39 xenoRefGene,48 xenoRefGene,86 xenoRefGene,98 xenoRefGene,141 xenoRefGene,170 xenoRefGene,282 tracks augustusGene,41 est,59 est,413 intronEst,137 intronEst,488 mrna,40 mrna,352 netCaePb1,266 netCaeRem2,266 netCb3,266 netCe6,264 uniprot,91 uniprot,123 uniprot,206 uniprot,409 uniprot,1643 xenoRefGene,56 traditional chainCaePb1,44 chainCaeRem2,44 chainCb3,44 chainCe6,42 trained augustusGene,150 training augustusGene,162 augustusGene,176 augustusGene,180 augustusGene,199 augustusGene,228 augustusGene,243 augustusGene,259 augustusGene,273 transcribed est,44 est,427 intronEst,55 intronEst,502 transcript est,522 intronEst,597 uniprot,837 uniprot,908 uniprot,918 uniprot,945 uniprot,963 uniprot,1003 uniprot,1076 uniprot,1223 uniprot,1237 uniprot,1249 uniprot,1263 uniprot,1268 uniprot,1291 uniprot,1325 uniprot,1596 uniprot,1610 uniprot,1623 transcript-genome uniprot,813 uniprot,1619 transcript-to-genome uniprot,806 transcriptase est,478 intronEst,553 transcription est,101 est,461 est,508 est,530 intronEst,176 intronEst,536 intronEst,583 intronEst,605 transcriptional tRNAs,497 transcripts augustusGene,124 uniprot,786 uniprot,833 uniprot,928 uniprot,936 uniprot,957 uniprot,985 uniprot,992 uniprot,1011 uniprot,1022 uniprot,1032 uniprot,1056 uniprot,1069 uniprot,1091 uniprot,1096 uniprot,1108 uniprot,1127 uniprot,1168 uniprot,1338 uniprot,1474 xenoRefGene,379 transfer tRNAs,3 tRNAs,374 tRNAs,451 translation augustusGene,57 tRNAs,159 tRNAs,195 transmembrane unipLocTransMemb,1 unipLocTransMemb,3 uniprot,265 uniprot,273 uniprot,515 uniprot,567 transposons chainCaePb1,289 chainCaePb1,318 chainCaeRem2,289 chainCaeRem2,318 chainCb3,289 chainCb3,318 chainCe6,287 chainCe6,316 netCaePb1,396 netCaeRem2,396 netCb3,396 netCe6,394 treat tRNAs,279 tree spMut,300 trembl unipAliTrembl,1 unipAliTrembl,6 uniprot,4 uniprot,44 uniprot,79 uniprot,185 uniprot,192 uniprot,199 uniprot,211 uniprot,500 uniprot,604 uniprot,661 trends rmsk,324 trf simpleRepeat,7 simpleRepeat,26 simpleRepeat,61 simpleRepeat,67 tri-nucleotide microsat,5 microsat,34 tried uniprot,869 trimming netCaePb1,294 netCaeRem2,294 netCb3,294 netCe6,292 trna rmsk,161 tRNAs,1 tRNAs,17 tRNAs,50 tRNAs,98 tRNAs,109 tRNAs,132 tRNAs,140 tRNAs,146 tRNAs,173 tRNAs,275 tRNAs,285 tRNAs,313 tRNAs,342 tRNAs,423 tRNAs,484 trna-derived tRNAs,149 tRNAs,301 trnas tRNAs,84 tRNAs,161 tRNAs,196 tRNAs,225 trnascan tRNAs,31 trnascan-se tRNAs,8 tRNAs,22 tRNAs,24 tRNAs,115 tRNAs,330 tRNAs,444 true augustusGene,132 tRNAs,83 turn chainCaePb1,244 chainCaeRem2,244 chainCb3,244 chainCe6,242 xenoRefGene,133 turns uniprot,370 two gap,68 netCaePb1,402 netCaeRem2,402 netCb3,402 netCe6,400 uniprot,71 uniprot,630 uniprot,1641 type est,169 est,199 gap,160 gold,153 intronEst,244 intronEst,274 mrna,115 mrna,145 uniprot,65 uniprot,271 uniprot,464 uniprot,614 types augustusGene,89 est,248 gap,69 intronEst,323 mrna,194 netCaePb1,194 netCaeRem2,194 netCb3,194 netCe6,192 uniprot,676 typical tRNAs,311 typically est,33 est,430 gc5Base,33 intronEst,44 intronEst,505 u chainCaePb1,553 chainCaeRem2,553 chainCb3,553 chainCe6,551 netCaePb1,491 netCaeRem2,491 netCb3,491 netCe6,489 ucsc blastCe6SG,34 ctgPos2,56 est,699 gold,49 intronEst,777 mrna,416 rmsk,211 tRNAs,340 unipAliSwissprot,3 unipAliTrembl,3 uniprot,107 uniprot,190 uniprot,773 uniprot,826 uniprot,827 uniprot,844 uniprot,1206 uniprot,1275 uniprot,1668 uniprot,1947 xenoRefGene,286 undergone xenoRefGene,69 underlying spMut,347 uniprot,1682 xenoRefGene,37 underneath netCaePb1,330 netCaeRem2,330 netCb3,330 netCe6,328 unexpected uniprot,766 ungapped netCaePb1,133 netCaeRem2,133 netCb3,133 netCe6,131 uniprot spMut,1 spMut,3 spMut,91 spMut,104 spMut,113 spMut,162 spMut,170 spMut,193 spMut,199 spMut,235 spMut,238 spMut,255 spMut,261 spMut,420 spMut,463 spMut,474 unipChain,2 unipConflict,3 unipDisulfBond,3 unipDomain,2 unipInterest,2 unipLocCytopl,2 unipLocExtra,2 unipLocSignal,3 unipLocTransMemb,2 unipModif,3 unipMut,2 unipOther,3 unipRepeat,2 unipStruct,2 uniprot,1 uniprot,2 uniprot,23 uniprot,30 uniprot,41 uniprot,43 uniprot,68 uniprot,152 uniprot,237 uniprot,253 uniprot,264 uniprot,275 uniprot,286 uniprot,296 uniprot,322 uniprot,332 uniprot,337 uniprot,349 uniprot,358 uniprot,371 uniprot,380 uniprot,382 uniprot,392 uniprot,413 uniprot,424 uniprot,453 uniprot,494 uniprot,529 uniprot,544 uniprot,573 uniprot,669 uniprot,714 uniprot,721 uniprot,738 uniprot,750 uniprot,779 uniprot,924 uniprot,996 uniprot,1016 uniprot,1029 uniprot,1231 uniprot,1437 uniprot,1503 uniprot,1509 uniprot,1513 uniprot,1591 uniprot,1669 uniprot,1702 uniprot,1817 uniprot,1845 uniprot,1910 uniprot,1964 uniprot,1976 uniprot,1985 uniprot,1996 uniprot-annotated uniprot,1279 uniprotmutations spMut,308 unipstruct.bb uniprot,1818 uniptogenome.over.chain.gz uniprot,1896 uniprot,1912 uniprot,1934 uniptogenomelift.psl.gz uniprot,1899 unique uniprot,1600 universal spMut,471 uniprot,1993 university chainCaePb1,428 chainCaePb1,473 chainCaeRem2,428 chainCaeRem2,473 chainCb3,428 chainCb3,473 chainCe6,426 chainCe6,471 ctgPos2,128 gap,203 gold,175 netCaePb1,416 netCaePb1,430 netCaeRem2,416 netCaeRem2,430 netCb3,416 netCb3,430 netCe6,414 netCe6,428 unknown rmsk,173 unplaced gap,187 unprocessed chainCaePb1,191 chainCaeRem2,191 chainCb3,191 chainCe6,189 est,573 intronEst,648 unsequenced chainCaePb1,148 chainCaeRem2,148 chainCb3,148 chainCe6,146 unspliced est,8 est,602 intronEst,117 intronEst,677 up blastCe6SG,70 rmsk,117 update est,726 intronEst,804 mrna,443 rmsk,82 rmsk,94 rmsk,307 rmsk,314 xenoRefGene,344 updated uniprot,1566 xenoRefGene,41 urged spMut,61 us uniprot,687 uniprot,1441 use ctgPos2,137 est,166 gap,212 gold,121 gold,184 intronEst,241 mrna,112 spMut,18 tRNAs,357 uniprot,991 uniprot,1021 uniprot,1073 uniprot,1225 used augustusGene,146 augustusGene,174 augustusGene,183 augustusGene,231 augustusGene,246 blastCe6SG,193 chainCaePb1,397 chainCaeRem2,397 chainCb3,397 chainCe6,395 ctgPos2,13 est,123 est,264 est,323 est,541 intronEst,198 intronEst,339 intronEst,398 intronEst,616 mrna,69 mrna,210 mrna,269 netCaePb1,50 netCaePb1,285 netCaePb1,337 netCaePb1,370 netCaeRem2,50 netCaeRem2,285 netCaeRem2,337 netCaeRem2,370 netCb3,50 netCb3,285 netCb3,337 netCb3,370 netCe6,49 netCe6,283 netCe6,335 netCe6,368 rmsk,213 rmsk,258 rmsk,300 spMut,138 spMut,230 spMut,403 uniprot,1062 uniprot,1087 uniprot,1118 uniprot,1198 uniprot,1210 uniprot,1319 uniprot,1351 uniprot,1550 uniprot,1626 uniprot,1801 uniprot,1883 useful microsat,20 netCaePb1,36 netCaePb1,167 netCaeRem2,36 netCaeRem2,167 netCb3,36 netCb3,167 netCe6,35 netCe6,165 user est,382 intronEst,457 mrna,328 users spMut,50 uniprot,406 uniprot,684 xenoRefGene,150 uses rmsk,79 tRNAs,30 using augustusGene,294 blastCe6SG,55 blastCe6SG,80 blastCe6SG,93 chainCaePb1,34 chainCaePb1,313 chainCaePb1,332 chainCaeRem2,34 chainCaeRem2,313 chainCaeRem2,332 chainCb3,34 chainCb3,313 chainCb3,332 chainCe6,32 chainCe6,311 chainCe6,330 est,624 gap,113 intronEst,699 microsat,90 mrna,364 netCaePb1,259 netCaeRem2,259 netCb3,259 netCe6,257 rmsk,15 rmsk,249 spMut,275 spMut,366 tRNAs,21 tRNAs,401 uniprot,217 uniprot,722 uniprot,1526 xenoRefGene,227 usually est,40 gap,131 intronEst,51 tRNAs,239 tRNAs,307 utilities blastCe6SG,192 utils spMut,307 v.1.23 tRNAs,23 v3.1 augustusGene,7 valid est,214 intronEst,289 mrna,160 validate xenoRefGene,153 value est,274 intronEst,349 mrna,220 variant spMut,189 spMut,194 spMut,226 spMut,504 uniprot,2026 variants spMut,2 spMut,88 spMut,115 spMut,179 spMut,205 spMut,256 spMut,265 spMut,520 uniprot,357 uniprot,415 uniprot,425 uniprot,533 uniprot,943 uniprot,2042 variation microsat,7 rmsk,6 simpleRepeat,8 spMut,8 uniprot,438 variety gc5Base,45 quality,61 various uniprot,50 varying gap,120 vb chainCaePb1,511 chainCaeRem2,511 chainCb3,511 chainCe6,509 vector est,438 intronEst,513 version augustusGene,23 augustusGene,263 blastCe6SG,32 rmsk,58 uniprot,1254 uniprot,1297 uniprot,1576 uniprot,1593 versions augustusGene,279 rmsk,217 rmsk,233 uniprot,1655 vertebrate tRNAs,160 vertebrates augustusGene,209 very est,645 intronEst,720 uniprot,977 uniprot,1185 uniprot,1399 uniprot,1402 via uniprot,1293 view est,210 intronEst,285 mrna,156 netCaePb1,144 netCaeRem2,144 netCb3,144 netCe6,142 viewed est,606 intronEst,681 visible uniprot,147 w blastCe6SG,163 blastCe6SG,165 chainCaePb1,513 chainCaePb1,533 chainCaePb1,606 chainCaeRem2,513 chainCaeRem2,533 chainCaeRem2,606 chainCb3,513 chainCb3,533 chainCb3,606 chainCe6,511 chainCe6,531 chainCe6,604 gold,155 netCaePb1,471 netCaePb1,519 netCaeRem2,471 netCaeRem2,519 netCb3,471 netCb3,519 netCe6,469 netCe6,517 waack augustusGene,318 want uniprot,690 was augustusGene,230 augustusGene,245 augustusGene,264 augustusGene,280 blastCe6SG,185 chainCaePb1,378 chainCaePb1,396 chainCaePb1,423 chainCaePb1,469 chainCaeRem2,378 chainCaeRem2,396 chainCaeRem2,423 chainCaeRem2,469 chainCb3,378 chainCb3,396 chainCb3,423 chainCb3,469 chainCe6,376 chainCe6,394 chainCe6,421 chainCe6,467 ctgPos2,123 est,667 est,696 gap,198 gold,170 intronEst,742 intronEst,774 microsat,108 mrna,383 mrna,413 netCaePb1,283 netCaePb1,328 netCaePb1,336 netCaePb1,356 netCaePb1,368 netCaePb1,393 netCaePb1,425 netCaeRem2,283 netCaeRem2,328 netCaeRem2,336 netCaeRem2,356 netCaeRem2,368 netCaeRem2,393 netCaeRem2,425 netCb3,283 netCb3,328 netCb3,336 netCb3,356 netCb3,368 netCb3,393 netCb3,425 netCe6,281 netCe6,326 netCe6,334 netCe6,354 netCe6,366 netCe6,391 netCe6,423 rmsk,12 simpleRepeat,68 spMut,449 uniprot,799 uniprot,815 uniprot,1354 uniprot,1625 uniprot,1941 xenoRefGene,254 xenoRefGene,283 washington ctgPos2,127 gap,202 gold,174 way uniprot,1459 ways gc5Base,47 quality,63 we chainCaePb1,446 chainCaeRem2,446 chainCb3,446 chainCe6,444 uniprot,1224 uniprot,1453 uniprot,1859 webb chainCaePb1,437 chainCaePb1,485 chainCaeRem2,437 chainCaeRem2,485 chainCb3,437 chainCb3,485 chainCe6,435 chainCe6,483 netCaePb1,439 netCaeRem2,439 netCb3,439 netCe6,437 weekly xenoRefGene,42 weight tRNAs,493 well augustusGene,78 est,510 est,533 intronEst,585 intronEst,608 rmsk,54 were augustusGene,50 augustusGene,66 augustusGene,125 augustusGene,149 augustusGene,182 blastCe6SG,48 blastCe6SG,73 blastCe6SG,90 blastCe6SG,119 blastCe6SG,141 blastCe6SG,198 chainCaePb1,301 chainCaePb1,309 chainCaePb1,319 chainCaePb1,327 chainCaePb1,339 chainCaePb1,411 chainCaePb1,499 chainCaeRem2,301 chainCaeRem2,309 chainCaeRem2,319 chainCaeRem2,327 chainCaeRem2,339 chainCaeRem2,411 chainCaeRem2,499 chainCb3,301 chainCb3,309 chainCb3,319 chainCb3,327 chainCb3,339 chainCb3,411 chainCb3,499 chainCe6,299 chainCe6,307 chainCe6,317 chainCe6,325 chainCe6,337 chainCe6,409 chainCe6,497 est,560 est,619 est,691 gc5Base,79 intronEst,635 intronEst,694 mrna,359 mrna,407 netCaePb1,254 netCaePb1,412 netCaePb1,455 netCaeRem2,254 netCaeRem2,412 netCaeRem2,455 netCb3,254 netCb3,412 netCb3,455 netCe6,252 netCe6,410 netCe6,453 quality,89 quality,105 spMut,229 spMut,240 spMut,257 spMut,266 tRNAs,345 uniprot,782 uniprot,794 uniprot,930 uniprot,937 uniprot,1386 uniprot,1471 uniprot,1505 uniprot,1515 xenoRefGene,220 xenoRefGene,237 xenoRefGene,278 wget uniprot,1903 uniprot,1913 what tRNAs,112 wheeler est,723 intronEst,801 mrna,440 when augustusGene,188 augustusGene,238 est,146 est,156 est,652 intronEst,35 intronEst,221 intronEst,231 intronEst,727 mrna,92 mrna,102 mrna,368 netCaePb1,95 netCaeRem2,95 netCb3,95 netCe6,93 quality,41 tRNAs,355 uniprot,951 uniprot,1202 uniprot,1632 xenoRefGene,239 where chainCaePb1,155 chainCaeRem2,155 chainCb3,155 chainCe6,153 uniprot,1192 whether netCaePb1,352 netCaeRem2,352 netCb3,352 netCe6,350 tRNAs,138 which augustusGene,159 augustusGene,227 chainCaePb1,234 chainCaePb1,343 chainCaeRem2,234 chainCaeRem2,343 chainCb3,234 chainCb3,343 chainCe6,232 chainCe6,341 est,106 est,233 est,467 est,492 est,639 intronEst,181 intronEst,308 intronEst,542 intronEst,567 intronEst,714 mrna,179 netCaePb1,317 netCaeRem2,317 netCb3,317 netCe6,315 rmsk,21 rmsk,64 rmsk,129 rmsk,142 rmsk,167 simpleRepeat,27 spMut,370 uniprot,158 uniprot,1380 uniprot,1768 while chainCaePb1,179 chainCaeRem2,179 chainCb3,179 chainCe6,177 spMut,40 white gap,52 whole gap,76 gap,109 gold,157 netCaePb1,152 netCaeRem2,152 netCb3,152 netCe6,150 spMut,360 wildcards est,260 intronEst,335 mrna,206 will est,293 est,311 est,340 est,357 intronEst,368 intronEst,386 intronEst,415 intronEst,432 mrna,239 mrna,257 mrna,286 mrna,303 uniprot,537 uniprot,665 uniprot,754 uniprot,1142 uniprot,1162 window-based chainCaePb1,577 chainCaeRem2,577 chainCb3,577 chainCe6,575 windowmasker chainCaePb1,452 chainCaePb1,576 chainCaeRem2,452 chainCaeRem2,576 chainCb3,452 chainCb3,576 chainCe6,450 chainCe6,574 windows gc5Base,7 gc5Base,28 wish est,235 intronEst,310 mrna,181 xenoRefGene,207 with augustusGene,127 augustusGene,322 blastCe6SG,75 chainCaePb1,170 chainCaePb1,181 chainCaePb1,311 chainCaePb1,439 chainCaePb1,451 chainCaePb1,482 chainCaePb1,609 chainCaeRem2,170 chainCaeRem2,181 chainCaeRem2,311 chainCaeRem2,439 chainCaeRem2,451 chainCaeRem2,482 chainCaeRem2,609 chainCb3,170 chainCb3,181 chainCb3,311 chainCb3,439 chainCb3,451 chainCb3,482 chainCb3,609 chainCe6,168 chainCe6,179 chainCe6,309 chainCe6,437 chainCe6,449 chainCe6,480 chainCe6,607 ctgPos2,75 ctgPos2,133 est,105 est,469 est,607 est,644 est,687 gap,208 gc5Base,35 gold,68 gold,180 intronEst,180 intronEst,544 intronEst,682 intronEst,719 intronEst,762 microsat,69 microsat,76 mrna,403 netCaePb1,271 netCaePb1,395 netCaePb1,441 netCaePb1,522 netCaeRem2,271 netCaeRem2,395 netCaeRem2,441 netCaeRem2,522 netCb3,271 netCb3,395 netCb3,441 netCb3,522 netCe6,269 netCe6,393 netCe6,439 netCe6,520 rmsk,195 simpleRepeat,52 spMut,26 spMut,64 spMut,118 spMut,246 spMut,253 spMut,318 spMut,454 tRNAs,7 tRNAs,58 tRNAs,85 tRNAs,119 tRNAs,162 tRNAs,177 tRNAs,197 tRNAs,242 uniprot,183 uniprot,258 uniprot,280 uniprot,458 uniprot,639 uniprot,716 uniprot,788 uniprot,946 uniprot,1475 uniprot,1481 uniprot,1496 uniprot,1501 uniprot,1718 uniprot,1948 xenoRefGene,230 xenoRefGene,274 within est,139 est,520 est,676 gold,147 intronEst,214 intronEst,595 intronEst,751 mrna,85 mrna,392 simpleRepeat,37 spMut,408 uniprot,1109 uniprot,1313 uniprot,1345 uniprot,1488 uniprot,1806 xenoRefGene,84 xenoRefGene,263 without uniprot,139 wj chainCaePb1,527 chainCaePb1,594 chainCaeRem2,527 chainCaeRem2,594 chainCb3,527 chainCb3,594 chainCe6,525 chainCe6,592 est,742 intronEst,820 mrna,459 netCaePb1,465 netCaePb1,507 netCaeRem2,465 netCaeRem2,507 netCb3,465 netCb3,507 netCe6,463 netCe6,505 xenoRefGene,304 words uniprot,1201 worldwide est,713 intronEst,791 mrna,430 xenoRefGene,294 wormbase blastCe6SG,26 blastCe6SG,45 written blastCe6SG,186 blastCe6SG,199 microsat,109 quality,106 simpleRepeat,69 ws190 blastCe6SG,6 blastCe6SG,33 chainCe6,8 chainCe6,25 netCe6,8 netCe6,58 wugsc chainCaePb1,8 chainCaePb1,26 chainCaeRem2,8 chainCaeRem2,26 chainCb3,8 chainCb3,26 netCaePb1,8 netCaePb1,59 netCaeRem2,8 netCaeRem2,59 netCb3,8 netCb3,59 x uniprot,1923 xml spMut,262 uniprot,1510 yap chainCaePb1,510 chainCaeRem2,510 chainCb3,510 chainCe6,508 years uniprot,933 yip spMut,488 uniprot,2010 yl spMut,489 uniprot,2011 you est,234 intronEst,309 mrna,180 uniprot,655 uniprot,689 uniprot,1443 xenoRefGene,206 your spMut,385 uniprot,1783 z chainCaePb1,598 chainCaeRem2,598 chainCb3,598 chainCe6,596 netCaePb1,511 netCaeRem2,511 netCb3,511 netCe6,509 zebrafish augustusGene,202 augustusGene,278 zhang chainCaePb1,435 chainCaePb1,597 chainCaeRem2,435 chainCaeRem2,597 chainCb3,435 chainCb3,597 chainCe6,433 chainCe6,595 netCaePb1,437 netCaePb1,510 netCaeRem2,437 netCaeRem2,510 netCb3,437 netCb3,510 netCe6,435 netCe6,508 zheng chainCaePb1,434 chainCaeRem2,434 chainCb3,434 chainCe6,432 netCaePb1,436 netCaeRem2,436 netCb3,436 netCe6,434 zinc uniprot,326 zone tRNAs,208 zoomed quality,42