0 IgG_Z-score-_COVID-19_patients,155 IgG_Z-score-_COVID-19_patients,158 IgG_Z-score-_COVID-19_patients,380 IgM_Z-score-_COVID-19_patients,155 IgM_Z-score-_COVID-19_patients,158 IgM_Z-score-_COVID-19_patients,380 PhyloCSF_smooth,154 PhyloCSF_smooth,291 PhyloCSF_smooth,601 PhyloCSFpower,169 PhyloCSFpower,306 PhyloCSFpower,604 PhyloCSFpower,612 Starr_Bloom,129 Starr_Bloom_bind,123 abEscape,310 artic,162 articV4,162 articV4_1,175 bloomEscMabAvg,314 bloomEscMax,320 bloomEscSerumAvg,315 bloomEscTop,318 bpmIggCovidSum,164 bpmIggCovidSum,167 bpmIggCovidSum,389 bpmIgmCovidSum,164 bpmIgmCovidSum,167 bpmIgmCovidSum,389 cas13Crispr,447 contacts,375 escape,317 icshape,77 kimRnaMod,209 kimTranscripts,427 mccoy,310 ncbiGeneBGP,142 ncbiProducts,158 pbm,164 pbm,167 pbm,389 pbmShanghai,236 phyloGenes,424 poranHla1,237 poranHla2,237 pyle,179 rapid,316 rappuoli,317 strainCons119way,384 strainCons119way,2138 strainCons44way,332 strainCons44way,1733 swift,245 transcriptome,433 unipCov2AliSwissprot,373 unipCov2Chain,603 unipCov2DisulfBond,599 unipCov2Domain,598 unipCov2Interest,279 unipCov2LocCytopl,598 unipCov2LocExtra,598 unipCov2LocSignal,599 unipCov2LocTransMemb,599 unipCov2Modif,602 unipCov2Mut,599 unipCov2Other,599 unipCov2Repeat,597 unipCov2Struct,601 varskip,168 0-1.0 pbmShanghai,248 0-15 pbmShanghai,245 0-3.5 IgG_Z-score-_COVID-19_patients,170 IgM_Z-score-_COVID-19_patients,170 bpmIggCovidSum,179 bpmIgmCovidSum,179 pbm,179 0.00001 addgene,208 0.001 Q0_tracks,795 Q1_tracks,797 Q2_tracks,797 Q3_tracks,797 galaxyEna,797 galaxyEnaQ0Ba-1,793 galaxyEnaQ0Ba-1-1,793 galaxyEnaQ0Ba-1-1-11,793 galaxyEnaQ0Ba-1-17,793 galaxyEnaQ0Ba-2,793 galaxyEnaQ1Ay-4,793 galaxyEnaQ1Ay-4-2,793 galaxyEnaQ1Ay-4-2-2,793 galaxyEnaQ1Ay-43,793 galaxyEnaQ1Ba-1-17,793 galaxyEnaQ2Ay-120,793 galaxyEnaQ2Ay-122,793 galaxyEnaQ2Ay-4,793 galaxyEnaQ2Ay-5,793 galaxyEnaQ2Ay-6,793 galaxyEnaQ3Ay-4,793 galaxyEnaQ3Ay-5,793 galaxyEnaQ3Ay-9,793 galaxyEnaQ3B-1-1-7,793 galaxyEnaQ3B-1-617-2,793 0.01 cpgIslandExt,473 cpgIslandExtUnmasked,476 cpgIslandSuper,473 0.05 Q0_tracks,755 Q1_tracks,757 Q2_tracks,757 Q3_tracks,757 galaxyEna,757 galaxyEnaQ0Ba-1,753 galaxyEnaQ0Ba-1-1,753 galaxyEnaQ0Ba-1-1-11,753 galaxyEnaQ0Ba-1-17,753 galaxyEnaQ0Ba-2,753 galaxyEnaQ1Ay-4,753 galaxyEnaQ1Ay-4-2,753 galaxyEnaQ1Ay-4-2-2,753 galaxyEnaQ1Ay-43,753 galaxyEnaQ1Ba-1-17,753 galaxyEnaQ2Ay-120,753 galaxyEnaQ2Ay-122,753 galaxyEnaQ2Ay-4,753 galaxyEnaQ2Ay-5,753 galaxyEnaQ2Ay-6,753 galaxyEnaQ3Ay-4,753 galaxyEnaQ3Ay-5,753 galaxyEnaQ3Ay-9,753 galaxyEnaQ3B-1-1-7,753 galaxyEnaQ3B-1-617-2,753 gordon2,166 0.0f cpgIslandExt,449 cpgIslandExtUnmasked,452 cpgIslandSuper,449 0.1 IgG_Z-score-_COVID-19_patients,247 IgM_Z-score-_COVID-19_patients,247 PhyloCSF_smooth,175 PhyloCSF_smooth,237 PhyloCSF_smooth,267 PhyloCSFpower,190 PhyloCSFpower,252 PhyloCSFpower,282 Q0_tracks,792 Q1_tracks,794 Q2_tracks,794 Q3_tracks,794 bpmIggCovidSum,256 bpmIgmCovidSum,256 galaxyEna,794 galaxyEnaQ0Ba-1,790 galaxyEnaQ0Ba-1-1,790 galaxyEnaQ0Ba-1-1-11,790 galaxyEnaQ0Ba-1-17,790 galaxyEnaQ0Ba-2,790 galaxyEnaQ1Ay-4,790 galaxyEnaQ1Ay-4-2,790 galaxyEnaQ1Ay-4-2-2,790 galaxyEnaQ1Ay-43,790 galaxyEnaQ1Ba-1-17,790 galaxyEnaQ2Ay-120,790 galaxyEnaQ2Ay-122,790 galaxyEnaQ2Ay-4,790 galaxyEnaQ2Ay-5,790 galaxyEnaQ2Ay-6,790 galaxyEnaQ3Ay-4,790 galaxyEnaQ3Ay-5,790 galaxyEnaQ3Ay-9,790 galaxyEnaQ3B-1-1-7,790 galaxyEnaQ3B-1-617-2,790 pbm,256 sarsCov2PhyloMinAf001,4 sarsCov2PhyloMinAf001,12 sarsCov2PhyloPub,848 sarsCov2PhyloPubAllMinAf001,3 sarsCov2PhyloPubAllMinAf001,11 0.18 abEscape,481 bloomEscMabAvg,485 bloomEscMax,491 bloomEscSerumAvg,486 bloomEscTop,15 bloomEscTop,489 escape,488 mccoy,481 rappuoli,488 0.1f cpgIslandExt,451 cpgIslandExtUnmasked,454 cpgIslandSuper,451 0.2 augustusGene,136 0.285 IgG_Z-score-_COVID-19_patients,233 IgM_Z-score-_COVID-19_patients,233 bpmIggCovidSum,242 bpmIgmCovidSum,242 pbm,242 pbmShanghai,381 0.3 kimRnaMod,96 strainCons119way,1976 strainCons119way,1978 strainCons44way,1571 strainCons44way,1573 0.4 pyle,84 pyle,99 0.5 augustusGene,138 pyle,140 rosettaMhc,221 0.6 cpgIslandExt,276 cpgIslandExtUnmasked,279 cpgIslandSuper,276 0.7 gordon2,158 0.8 primers,311 0.85 pyle,103 pyle,109 variantMuts,929 0.9 IgG_Z-score-_COVID-19_patients,249 IgM_Z-score-_COVID-19_patients,249 bpmIggCovidSum,258 bpmIgmCovidSum,258 pbm,258 0.95 variantMuts,883 000 kimTranscripts,187 strainCons119way,657 strainCons44way,605 variantMuts,827 0012019-12-30nc_045512.20.000000wuhan-hu-1 strainCons119way,1049 0012019-12nc_045512.20.000000sars-cov-2 strainCons44way,997 0022013-07-24mn996532.10.111391bat strainCons44way,999 0022020-01-02mn988668.10.0000032019-ncov strainCons119way,1050 0032005-10-25dq022305.20.756533bat strainCons44way,1002 0032019-12-30mn996528.10.000003wiv04 strainCons119way,1052 0042010-04-05gq153542.10.758373bat strainCons44way,1006 0042019-12-30mt019532.10.000003betacov strainCons119way,1053 0052010-04-05gq153547.10.758589bat strainCons44way,1010 0052020-01-01lr757996.10.000004betacov strainCons119way,1057 0062011-09jx993987.10.825373bat strainCons44way,1014 0062019-12-30mn996530.10.000006wiv06 strainCons119way,1061 0072013kj473814.10.844563btrs-betacov strainCons44way,1018 0072020-01-20mt039873.10.000006betacov strainCons119way,1062 0082006-07-13dq412043.10.861670bat strainCons44way,1020 0082020-01-07nmdc60013002-070.000006betacov strainCons119way,1067 0092011jx993988.10.866485bat strainCons44way,1024 0092020-01-01mt019533.10.000008betacov strainCons119way,1071 01 cd8escape,127 cd8escape,131 cd8escape,160 cd8escape,164 epitopes,115 rosettaMhc,106 rosettaMhc,177 rosettaMhc,284 rosettaMhc,305 strainCons119way,1264 0102006fj588686.10.870015bat strainCons44way,1028 0102020-02-10mt106053.10.0000082019-ncov strainCons119way,1075 0110.3hla-b epitopes,134 0111.5hla-b epitopes,130 0112.9hla-a epitopes,122 0112006-07-13dq412042.10.873059bat strainCons44way,1033 0112020-02-23mt118835.10.0000082019-ncov strainCons119way,1078 0115.4hla-a epitopes,120 0116.2hla-a epitopes,116 0122006-07-19dq648856.10.874586bat strainCons44way,1037 0122019-12-30nmdc60013002-060.000008betacov strainCons119way,1081 0125.2hla-a epitopes,118 0132013kj473812.10.876344btrf-betacov strainCons44way,1042 0132019-12-30mt019531.10.000010betacov strainCons119way,1085 0142016-09mk211375.10.880260cov strainCons44way,1044 0142019-12-30nmdc60013002-100.000010betacov strainCons119way,1089 015 J_15Max,4 J_15Total,4 0152013-04-17ky417147.10.883717bat strainCons44way,1047 0152019-12-30mt019530.10.000011betacov strainCons119way,1093 016.4hla-a epitopes,124 016.5hla-b epitopes,132 0162012ky770860.10.884677bat strainCons44way,1051 0162020-01-13mt072688.10.000012sars0cov-2 strainCons119way,1097 0172013-04-17ky417149.10.886441bat strainCons44way,1054 0172020-01-08mt093631.10.000013sars-cov-2 strainCons119way,1102 018 G_18Max,4 G_18Total,4 0182012ku973692.10.886655unverified strainCons44way,1058 0182020-01-31mt039887.10.0000142019-ncov strainCons119way,1107 0192016-04-17ky938558.10.886844bat strainCons44way,1062 0192020-01-29mt027064.10.0000152019-ncov strainCons119way,1110 02 cd8escape,126 cd8escape,159 epitopes,117 rosettaMhc,105 rosettaMhc,176 rosettaMhc,283 rosettaMhc,304 0202016-09mk211378.10.887400cov strainCons44way,1066 0202020-01-22mn994468.10.0000162019-ncov strainCons119way,1113 021 A_21Max,4 A_21Total,4 0212014-05-12ky417142.10.888076bat strainCons44way,1069 0212020-01-01nmdc60013002-090.000017betacov strainCons119way,1116 0213.3hla-b epitopes,128 0216.8hla-b epitopes,126 0222013ky770858.10.889779bat strainCons44way,1073 0222020-02-05mt066176.10.000018betacov strainCons119way,1120 0232016-09mk211377.10.890783cov strainCons44way,1076 0232020-02-10lc528232.10.000020sars-cov-2 strainCons119way,1124 0242012-09-18ky417145.10.891547bat strainCons44way,1079 0242020-02-10lc528233.10.000020sars-cov-2 strainCons119way,1129 0252013kj473816.10.892938btrs-betacov strainCons44way,1083 0252019-12-30mn996531.10.000020wiv07 strainCons119way,1134 026 B_26Max,4 B_26Total,4 I_26Max,4 I_26Total,4 0262018-08-13nc_004718.30.896070sars strainCons44way,1085 0262019-12-30mn996529.10.000021wiv05 strainCons119way,1135 0272013-04-17ky417148.10.897176bat strainCons44way,1087 0272020-01-27mt044258.10.000022sars-cov-2 strainCons119way,1136 028 E_28Max,4 E_28Total,4 0282012-09-18ky417143.10.898813bat strainCons44way,1091 0282019-12-26lr757998.10.000023betacov strainCons119way,1141 029 K_29Max,4 K_29Total,4 029.2hla-b epitopes,136 0292013kj473815.10.900478btrs-betacov strainCons44way,1095 0292019-12-30mn996527.10.000024wiv02 strainCons119way,1145 03 epitopes,119 0302006-01-25dq071615.10.903660bat strainCons44way,1097 0302020-01-29mt027062.10.0000252019-ncov strainCons119way,1146 0312013-05-23kp886808.10.914845bat strainCons44way,1101 0312020-02-05mt123290.10.000026sars-cov-2 strainCons119way,1149 032 C_32Max,4 C_32Total,4 0322016-08mk211374.10.920214cov strainCons44way,1105 0322020-01-25lc5219250.000027betacov strainCons119way,1154 033 D_33Max,4 D_33Total,4 0332016-09mk211376.10.932471cov strainCons44way,1108 0332020-01-29lc5229720.0000272019-ncov strainCons119way,1159 0342012-09kf367457.10.935102bat strainCons44way,1111 0342019-12-23mt019529.10.000027betacov strainCons119way,1164 0352012-09-18ky417144.10.938296bat strainCons44way,1115 0352020-02-28mt126808.10.000028sars-cov-2 strainCons119way,1168 0362015-10-16ky417152.10.938841bat strainCons44way,1119 0362020-01-25mt007544.10.000030betacov strainCons119way,1173 037.6 epitopes,138 0372011kf569996.10.940405rhinolophus strainCons44way,1123 0372020-01-17mt049951.10.000030sars-cov-2 strainCons119way,1177 0382014-10-24ky417151.10.945367bat strainCons44way,1127 0382020-02-28mt123292.10.000031sars-cov-2 strainCons119way,1182 0392013-04-17ky417146.10.946050bat strainCons44way,1131 0392020-01-29mt020781.10.000032betacov strainCons119way,1187 04 abEscape,724 bloomEscMabAvg,728 bloomEscMax,734 bloomEscSerumAvg,729 bloomEscTop,732 escape,731 mccoy,724 rappuoli,731 0402013-07-21kt444582.10.961789sars-like strainCons44way,1135 0402020-02-06mt106052.10.0000322019-ncov strainCons119way,1191 0412007-08ky352407.11.063753sars-related strainCons44way,1138 0412020-01-26mt135041.10.000032sars-cov-2 strainCons119way,1194 0422008nc_014470.11.075344bat strainCons44way,1142 0422020-01-28mt135043.10.000032sars-cov-2 strainCons119way,1199 0432017-02mg772933.11.076854bat strainCons44way,1147 0432020-01mn975262.10.0000332019-ncov_hku-sz-005b_2020 strainCons119way,1204 0442015-07mg772934.11.106462bat strainCons44way,1151 0442020-03-05mt152824.10.000033sars-cov-2 strainCons119way,1205 045 A_45Max,4 A_45Total,4 0452020-02-11mt039888.10.0000342019-ncov strainCons119way,1210 0462020-01-31lc5229750.0000352019-ncov strainCons119way,1213 0472020-01-29lc5229730.0000362019-ncov strainCons119way,1218 048 F_48Max,4 F_48Total,4 0482020-01-31lc5229740.0000362019-ncov strainCons119way,1223 0492020-01mn938384.10.0000362019-ncov_hku-sz-002a_2020 strainCons119way,1228 0502020-01-19mn985325.10.0000362019-ncov strainCons119way,1229 0512020-01-22mn997409.10.0000362019-ncov strainCons119way,1232 0522020-02-11mt106054.10.0000362019-ncov strainCons119way,1235 0532020-01-29mt123291.10.000036sars-cov-2 strainCons119way,1238 0542020-02-28mt123293.10.000036sars-cov-2 strainCons119way,1243 0552020-01-05lr757995.10.000037betacov strainCons119way,1248 0562020-02-01mt066175.10.000037taiwan strainCons119way,1252 0572020-01-23mn994467.10.0000382019-ncov strainCons119way,1255 0582020-01-28mt044257.10.000038sars-cov-2 strainCons119way,1258 0592020-02-07mt093571.10.000038sars-cov-2 strainCons119way,1263 06-jul-2021 variantMuts,666 0602020-01-21mn988713.10.0000392019-ncov strainCons119way,1268 061 H_61Max,4 H_61Total,4 0612020-01mt039890.10.000040betacov strainCons119way,1271 0622019-12-31lr757997.10.001411betacov strainCons119way,1275 0632019-12-30nmdc60013002-050.002318betacov strainCons119way,1279 0642013-07-24gwhabkp000000000.126322bat strainCons119way,1283 0652019-03-01gwhabkw000000000.318494pangolin-cov-2020 strainCons119way,1286 0662018-08-13nc_004718.30.885159sars strainCons119way,1288 0672018-08-13nc_014470.11.088135bat strainCons119way,1290 0682018-08-13nc_035191.11.483474wencheng strainCons119way,1295 0692018-08-13nc_009019.12.026165bat strainCons119way,1300 07 epitopes,127 0702018-08-13nc_010646.12.170350beluga strainCons119way,1303 0712018-08-13nc_016995.12.225972wigeon strainCons119way,1307 0722018-08-13nc_001451.12.263777avian strainCons119way,1310 0732018-08-13nc_026011.12.265050betacov strainCons119way,1314 0742018-08-13nc_010800.12.317576turkey strainCons119way,1318 0752018-08-24nc_039207.12.337043betacov strainCons119way,1320 076 D_76Max,4 D_76Total,4 0762018-08-13nc_025217.12.384179bat strainCons119way,1326 0772018-08-24nc_038294.12.434929betacov strainCons119way,1329 0782018-08-13nc_019843.32.434930mers strainCons119way,1332 0792018-08-13nc_017083.12.491178rabbit strainCons119way,1338 08 epitopes,129 0802018-08-13nc_016994.12.498432night-heron strainCons119way,1341 0812018-08-13nc_003045.12.507057bovine strainCons119way,1344 0822019-03-10nc_034440.12.542837bat strainCons119way,1346 0832018-08-13nc_009020.12.551785bat strainCons119way,1350 0842019-02-21nc_006213.12.589639human strainCons119way,1353 0852018-08-13nc_016996.12.598443common-moorhen strainCons119way,1359 0862018-08-24nc_011547.12.612548bulbul strainCons119way,1362 087 cas13Crispr,173 0872018-08-13nc_006577.22.649716human strainCons119way,1365 0882018-08-13nc_009021.12.778940bat strainCons119way,1368 0892018-08-13nc_012936.12.785289rat strainCons119way,1371 0902018-08-13nc_028811.12.786411btmr-alphacov strainCons119way,1374 0912018-08-13nc_001846.12.792354mouse strainCons119way,1376 0922018-08-13nc_016993.12.828026magpie-robin strainCons119way,1383 0925 nextstrainSamples,862 0932018-08-13nc_018871.12.831499rousettus strainCons119way,1386 094 G_94Max,4 G_94Total,4 0942018-08-13nc_030886.12.885630rousettus strainCons119way,1390 0952018-08-13nc_016992.12.887272sparrow strainCons119way,1395 0962018-08-24nc_039208.12.902341porcine strainCons119way,1398 0972018-08-13nc_011550.12.936050munia strainCons119way,1403 0982018-08-13nc_002645.12.983896human strainCons119way,1406 0992018-08-13nc_016991.13.002680white-eye strainCons119way,1409 1 CHX_24hr_1,4 CHX_24hr_1,8 CHX_5hr_1,4 CHX_5hr_1,8 CHX_7hr_1,4 CHX_7hr_1,8 Harr_24hr_1,4 Harr_24hr_1,8 Harr_5hr_1,4 Harr_5hr_1,8 Harr_7hr_1,4 Harr_7hr_1,8 IgG_Z-score-_COVID-19_patients,262 IgG_Z-score-_COVID-19_patients,264 IgM_Z-score-_COVID-19_patients,262 IgM_Z-score-_COVID-19_patients,264 LTM_24hr_1,4 LTM_24hr_1,8 LTM_5hr_1,4 LTM_5hr_1,8 LTM_7hr_1,4 LTM_7hr_1,8 PhyloCSF_minus_1,7 PhyloCSF_plus_1,3 PhyloCSF_plus_1,8 PhyloCSF_smooth,16 PhyloCSF_smooth,272 PhyloCSF_smooth,589 PhyloCSF_smooth,597 PhyloCSF_smooth,724 PhyloCSFpower,31 PhyloCSFpower,287 PhyloCSFpower,631 PhyloCSFpower,671 Q0_tracks,31 Q1_tracks,33 Q2_tracks,33 Q3_tracks,33 abEscape,312 abEscape,856 augustusGene,310 bloomEscMabAvg,316 bloomEscMabAvg,860 bloomEscMax,322 bloomEscMax,866 bloomEscSerumAvg,317 bloomEscSerumAvg,861 bloomEscTop,320 bloomEscTop,864 bpmIggCovidSum,271 bpmIggCovidSum,273 bpmIgmCovidSum,271 bpmIgmCovidSum,273 cas13Crispr,103 cas13Crispr,172 cas13Crispr,293 cpgIslandExt,245 cpgIslandExt,429 cpgIslandExt,458 cpgIslandExt,485 cpgIslandExtUnmasked,248 cpgIslandExtUnmasked,432 cpgIslandExtUnmasked,461 cpgIslandExtUnmasked,488 cpgIslandSuper,245 cpgIslandSuper,429 cpgIslandSuper,458 cpgIslandSuper,485 escape,319 escape,863 galaxyEna,33 galaxyEnaQ0Ba-1,29 galaxyEnaQ0Ba-1-1,29 galaxyEnaQ0Ba-1-1-11,29 galaxyEnaQ0Ba-1-17,29 galaxyEnaQ0Ba-2,29 galaxyEnaQ1Ay-4,29 galaxyEnaQ1Ay-4-2,29 galaxyEnaQ1Ay-4-2-2,29 galaxyEnaQ1Ay-43,29 galaxyEnaQ1Ba-1-17,29 galaxyEnaQ2Ay-120,29 galaxyEnaQ2Ay-122,29 galaxyEnaQ2Ay-4,29 galaxyEnaQ2Ay-5,29 galaxyEnaQ2Ay-6,29 galaxyEnaQ3Ay-4,29 galaxyEnaQ3Ay-5,29 galaxyEnaQ3Ay-9,29 galaxyEnaQ3B-1-1-7,29 galaxyEnaQ3B-1-617-2,29 genscan,227 gold,151 gordon2,119 gordon2,235 icshape,79 mRNA-seq_24hr_1,4 mRNA-seq_24hr_1,8 mRNA-seq_5hr_1,4 mRNA-seq_5hr_1,8 mRNA-seq_7hr_1,4 mRNA-seq_7hr_1,8 mccoy,312 mccoy,856 microdel,44 microdel,304 multiz7way,636 multiz7way,1005 multiz7way,1030 multiz7way,1270 nextstrainClade,269 nextstrainFreq,404 nextstrainFreq,427 nextstrainGene,218 nextstrainParsimony,471 nextstrainSamples,1024 nextstrainSamples,1047 nextstrainSamples,1079 pbm,271 pbm,273 pdb,158 pdb,160 phyloGenes,29 phyloGenes,492 phyloGenes,609 pond,112 pond,159 primers,207 primers,222 primers,300 rapid,81 rapid,370 rappuoli,319 rappuoli,863 rosettaMhc,243 rosettaMhc,329 sarsCov2Phylo,52 sarsCov2Phylo,147 sarsCov2Phylo,189 sarsCov2PhyloMinAf01,4 sarsCov2PhyloMinAf01,12 sarsCov2PhyloPub,66 sarsCov2PhyloPub,153 sarsCov2PhyloPub,196 sarsCov2PhyloPub,838 sarsCov2PhyloPubAllMinAf01,3 sarsCov2PhyloPubAllMinAf01,11 strainCons119way,386 strainCons119way,985 strainCons119way,1189 strainCons119way,1331 strainCons119way,2383 strainCons119way,2408 strainCons119way,2648 strainCons44way,334 strainCons44way,933 strainCons44way,1978 strainCons44way,2003 strainCons44way,2243 transcriptome,149 transcriptome,274 transcriptome,329 unipCov2AliSwissprot,171 unipCov2Chain,424 unipCov2DisulfBond,420 unipCov2Domain,419 unipCov2Interest,100 unipCov2LocCytopl,419 unipCov2LocExtra,419 unipCov2LocSignal,420 unipCov2LocTransMemb,420 unipCov2Modif,423 unipCov2Mut,420 unipCov2Other,420 unipCov2Repeat,418 unipCov2Struct,422 vaccines,314 vaccines,315 vaccines,318 vaccines,334 1-16 microdel,306 1-2 publicAnnots,41 1-20 phyloGenes,610 1-75 transcriptome,289 1-based variantMuts,730 variantMuts,751 variantMuts,770 1.0 pbmShanghai,355 1.04.00 strainCons119way,935 strainCons44way,883 1.04.03 multiz7way,585 1.2.2 cas13Crispr,324 1.6 recomb,29 10 IgG_Z-score-_COVID-19_patients,35 IgM_Z-score-_COVID-19_patients,35 PhyloCSF_smooth,280 PhyloCSFpower,295 abEscape,116 abEscape,262 abEscape,583 bloomEscMabAvg,120 bloomEscMabAvg,266 bloomEscMabAvg,587 bloomEscMax,126 bloomEscMax,272 bloomEscMax,593 bloomEscSerumAvg,121 bloomEscSerumAvg,267 bloomEscSerumAvg,588 bloomEscTop,124 bloomEscTop,270 bloomEscTop,591 bpmIggCovidSum,44 bpmIgmCovidSum,44 escape,123 escape,269 escape,590 mccoy,116 mccoy,262 mccoy,583 nextstrainSamples,498 pbm,44 pbmShanghai,534 primers,298 primers,309 pyle,306 rappuoli,123 rappuoli,269 rappuoli,590 rosettaMhc,251 sarsCov2Phylo,1138 sarsCov2PhyloPub,1271 strainCons119way,1021 strainCons44way,969 vaccines,259 vaccines,590 variantAaMutsV2_B_1_525,16 variantAaMutsV2_B_1_526,17 variantAaMutsV2_B_1_617_1,17 variantAaMutsV2_B_1_617_2,17 variantAaMutsV2_B_1_621,17 variantAaMutsV2_C_37,17 variantMuts,826 variantMuts,1106 variantNucMutsV2_B_1_525,15 variantNucMutsV2_B_1_526,16 variantNucMutsV2_B_1_617_1,16 variantNucMutsV2_B_1_617_2,16 variantNucMutsV2_B_1_621,16 variantNucMutsV2_C_37,16 10.1016 phyloGenes,584 10.1021 IgG_Z-score-_COVID-19_patients,444 IgM_Z-score-_COVID-19_patients,444 bpmIggCovidSum,453 bpmIgmCovidSum,453 pbm,453 10.1038 Q0_tracks,1352 Q1_tracks,1354 Q2_tracks,1354 Q3_tracks,1354 galaxyEna,1354 galaxyEnaQ0Ba-1,1350 galaxyEnaQ0Ba-1-1,1350 galaxyEnaQ0Ba-1-1-11,1350 galaxyEnaQ0Ba-1-17,1350 galaxyEnaQ0Ba-2,1350 galaxyEnaQ1Ay-4,1350 galaxyEnaQ1Ay-4-2,1350 galaxyEnaQ1Ay-4-2-2,1350 galaxyEnaQ1Ay-43,1350 galaxyEnaQ1Ba-1-17,1350 galaxyEnaQ2Ay-120,1350 galaxyEnaQ2Ay-122,1350 galaxyEnaQ2Ay-4,1350 galaxyEnaQ2Ay-5,1350 galaxyEnaQ2Ay-6,1350 galaxyEnaQ3Ay-4,1350 galaxyEnaQ3Ay-5,1350 galaxyEnaQ3Ay-9,1350 galaxyEnaQ3B-1-1-7,1350 galaxyEnaQ3B-1-617-2,1350 phyloGenes,612 10.1073 potPathoIndel,243 10.1101 PhyloCSFpower,753 epitopes,349 10.1186 microdel,309 phyloGenes,545 10.1371 Q0_tracks,1295 Q1_tracks,1297 Q2_tracks,1297 Q3_tracks,1297 galaxyEna,1297 galaxyEnaQ0Ba-1,1293 galaxyEnaQ0Ba-1-1,1293 galaxyEnaQ0Ba-1-1-11,1293 galaxyEnaQ0Ba-1-17,1293 galaxyEnaQ0Ba-2,1293 galaxyEnaQ1Ay-4,1293 galaxyEnaQ1Ay-4-2,1293 galaxyEnaQ1Ay-4-2-2,1293 galaxyEnaQ1Ay-43,1293 galaxyEnaQ1Ba-1-17,1293 galaxyEnaQ2Ay-120,1293 galaxyEnaQ2Ay-122,1293 galaxyEnaQ2Ay-4,1293 galaxyEnaQ2Ay-5,1293 galaxyEnaQ2Ay-6,1293 galaxyEnaQ3Ay-4,1293 galaxyEnaQ3Ay-5,1293 galaxyEnaQ3Ay-9,1293 galaxyEnaQ3B-1-1-7,1293 galaxyEnaQ3B-1-617-2,1293 10.5281 sarsCov2PhyloPub,1051 variantMuts,1445 100 augustusGene,134 icshape,132 icshape,152 kimTranscripts,180 kimTranscripts,186 kimTranscripts,216 kimTranscripts,269 multiz7way,156 multiz7way,165 multiz7way,617 multiz7way,623 multiz7way,1159 nextstrainFreq,221 nextstrainFreq,241 sarsCov2Phylo,523 sarsCov2PhyloPub,548 strainCons119way,505 strainCons119way,514 strainCons119way,964 strainCons119way,967 strainCons119way,968 strainCons119way,972 strainCons119way,973 strainCons119way,976 strainCons119way,2537 strainCons44way,453 strainCons44way,462 strainCons44way,912 strainCons44way,915 strainCons44way,916 strainCons44way,920 strainCons44way,921 strainCons44way,924 strainCons44way,2132 targets,69 vaccines,657 100.0 cpgIslandExt,474 cpgIslandExtUnmasked,477 cpgIslandSuper,474 1000 gordon2,114 gordon2,131 gordon2,246 kimTranscripts,194 kimTranscripts,232 kimTranscripts,236 kimTranscripts,273 kimTranscripts,278 microdel,238 multiz7way,672 poranHla1,73 poranHla2,73 strainCons119way,2140 strainCons44way,1735 vaccines,250 vaccines,276 1000-2000 augustusGene,161 10000 variantMuts,920 1002018-08-13nc_034972.13.004210coronavirus strainCons119way,1412 1012018-08-13nc_028752.13.008138camel strainCons119way,1414 102 I_102Max,4 I_102Total,4 I_102Total,13 1022018-08-13nc_005831.23.009141human strainCons119way,1420 103 K_103Max,4 K_103Total,4 K_103Total,13 103-7 multiz7way,1271 strainCons119way,2649 strainCons44way,2244 1032018-08-13nc_023760.13.023450mink strainCons119way,1423 1034-50 multiz7way,1074 strainCons119way,2452 strainCons44way,2047 104 C_104Max,4 C_104Total,4 C_104Total,13 E_104Max,4 E_104Total,4 E_104Total,13 vaccines,644 1042018-08-13nc_030292.13.041640ferret strainCons119way,1427 105 pyle,228 strainCons119way,1195 1052018-08-13nc_003436.13.068747porcine strainCons119way,1430 10592235 pdb,163 1062018-08-13nc_009657.13.074701scotophilus strainCons119way,1434 1072018-08-13nc_032107.13.086646nl63-related strainCons119way,1438 1082018-08-13nc_010438.13.120462bat strainCons119way,1443 1092018-08-13nc_022103.13.126101bat strainCons119way,1446 1095-1097 pbmShanghai,535 10mer rosettaMhc,96 11 bloomEscMax,21 bloomEscTotal,21 epitopes,121 igg_COVID_11,2 igg_COVID_11,4 igm_COVID_11,2 igm_COVID_11,4 pond,296 poranHla1,41 poranHla2,41 sarsCov2Phylo,968 sarsCov2PhyloPub,1088 variantMuts,1275 11-jan-2021 variantMuts,312 11-jan-2023 variantMuts,465 11-may-2021 variantMuts,328 110 vaccines,650 110-21 multiz7way,1031 strainCons119way,2409 strainCons44way,2004 1102018-08-13nc_011549.13.154652thrush strainCons119way,1451 111 vaccines,649 1110100110010101111 multiz7way,631 strainCons119way,981 strainCons44way,929 1112018-08-13nc_028814.13.185708btrf-alphacov strainCons119way,1454 1122018-08-13nc_032730.13.203052lucheng strainCons119way,1456 113 B_113Max,4 B_113Total,4 B_113Total,13 1132018-08-13nc_009988.13.204418bat strainCons119way,1461 114 multiz7way,612 multiz7way,616 multiz7way,624 multiz7way,628 1142018-08-13nc_028833.13.260958btnv-alphacov strainCons119way,1464 11484-9 multiz7way,1161 strainCons119way,2539 strainCons44way,2134 115 F_115Max,4 F_115Total,4 F_115Total,13 vaccines,648 115-26 multiz7way,1227 strainCons119way,2605 strainCons44way,2200 1152018-08-13nc_028806.13.346396swine strainCons119way,1466 1162018-08-24nc_038861.13.359831transmissible strainCons119way,1473 117 potPathoIndel,239 vaccines,652 vaccines,658 1172018-08-13nc_010437.13.404316bat strainCons119way,1476 1178-1179 Q0_tracks,1350 Q1_tracks,1352 Q2_tracks,1352 Q3_tracks,1352 galaxyEna,1352 galaxyEnaQ0Ba-1,1348 galaxyEnaQ0Ba-1-1,1348 galaxyEnaQ0Ba-1-1-11,1348 galaxyEnaQ0Ba-1-17,1348 galaxyEnaQ0Ba-2,1348 galaxyEnaQ1Ay-4,1348 galaxyEnaQ1Ay-4-2,1348 galaxyEnaQ1Ay-4-2-2,1348 galaxyEnaQ1Ay-43,1348 galaxyEnaQ1Ba-1-17,1348 galaxyEnaQ2Ay-120,1348 galaxyEnaQ2Ay-122,1348 galaxyEnaQ2Ay-4,1348 galaxyEnaQ2Ay-5,1348 galaxyEnaQ2Ay-6,1348 galaxyEnaQ3Ay-4,1348 galaxyEnaQ3Ay-5,1348 galaxyEnaQ3Ay-9,1348 galaxyEnaQ3B-1-1-7,1348 galaxyEnaQ3B-1-617-2,1348 118 PhyloCSF_smooth,767 PhyloCSFpower,746 1182018-08-13nc_002306.33.472931feline strainCons119way,1479 11889 vaccines,564 119 strainCons119way,1 strainCons119way,7 strainCons119way,48 strainCons119way,64 strainCons119way,129 strainCons119wayViewalign,6 strainCons119wayViewphastcons,7 strainCons119wayViewphyloP,7 strainName119way,6 strainPhastCons119way,2 strainPhyloP119way,2 vaccines,647 119-way strainCons119way,1740 1192018-08-13nc_028824.13.505645btrf-alphacov strainCons119way,1483 11928468 multiz7way,1229 strainCons119way,2607 strainCons44way,2202 12 IgG_Z-score-_COVID-19_patients,41 IgM_Z-score-_COVID-19_patients,41 PhyloCSF_smooth,775 bpmIggCovidSum,50 bpmIgmCovidSum,50 igg_COVID_12,2 igg_COVID_12,4 igm_COVID_12,2 igm_COVID_12,4 microdel,98 multiz7way,968 pbm,50 phyloGenes,608 strainCons119way,108 strainCons119way,2346 strainCons44way,1941 12-oct-2022 variantMuts,433 variantMuts,447 120 A_120Max,4 A_120Total,4 A_120Total,13 1200 rapid,46 rapid,355 1200bp rapid,6 12019-12-30nc_045512.20.000000sars-cov-2 multiz7way,700 121 J_121Max,4 J_121Total,4 J_121Total,13 123 multiz7way,614 multiz7way,626 125 multiz7way,618 multiz7way,622 1250 vaccines,591 12529312 multiz7way,1273 strainCons119way,2651 strainCons44way,2246 127-163 genscan,206 1295-1310.e20 Starr_Bloom,281 Starr_Bloom_bind,275 12th problematicSites,580 sarsCov2Phylo,1091 sarsCov2PhyloPub,1211 13 PhyloCSF_smooth,726 bloomEscMabAvg,15 bloomEscMax,16 bloomEscTotal,16 igg_COVID_13,2 igg_COVID_13,4 igm_COVID_13,2 igm_COVID_13,4 multiz7way,1004 multiz7way,1269 ncbiGeneBGP,18 ncbiProducts,21 sarsCov2Phylo,1070 sarsCov2PhyloPub,1190 strainCons119way,2382 strainCons119way,2647 strainCons44way,1977 strainCons44way,2242 vaccines,342 13-dec-2021 variantMuts,362 134-41 windowmaskerSdust,112 1360 variantAaMutsV2_B_1_429,13 variantNucMutsV2_B_1_429,12 1369-72 multiz7way,971 strainCons119way,2349 strainCons44way,1944 139 multiz7way,1117 strainCons119way,2495 strainCons44way,2090 14 igg_COVID_14,2 igg_COVID_14,4 igm_COVID_14,2 igm_COVID_14,4 kimIvtCov,193 microdel,302 multiz7way,1202 problematicSites,586 sarsCov2Phylo,1097 sarsCov2PhyloPub,1217 strainCons119way,2580 strainCons44way,2175 14-jun-2021 variantMuts,635 14.2 rfam,55 1403-1407 sarsCov2Phylo,969 sarsCov2PhyloPub,1089 variantMuts,1276 1419 vaccines,293 145-151 phyloGenes,582 14500911 multiz7way,1163 strainCons119way,2541 strainCons44way,2136 14534192 augustusGene,340 15 J_15Total,13 igg_COVID_15,2 igg_COVID_15,4 igm_COVID_15,2 igm_COVID_15,4 multiz7way,1072 simpleRepeat,90 strainCons119way,2450 strainCons44way,2045 variantMuts,1458 windowmaskerSdust,109 15-mar-2023 variantMuts,467 15060014 multiz7way,1206 strainCons119way,2584 strainCons44way,2179 15108278 unipCov2AliSwissprot,507 unipCov2Chain,736 unipCov2DisulfBond,732 unipCov2Domain,731 unipCov2Interest,390 unipCov2LocCytopl,731 unipCov2LocExtra,731 unipCov2LocSignal,732 unipCov2LocTransMemb,732 unipCov2Modif,735 unipCov2Mut,732 unipCov2Other,732 unipCov2Repeat,730 unipCov2Struct,734 15193-15199 potPathoIndel,241 152 H_152Max,4 H_152Total,4 H_152Total,13 16 Q0_tracks,1291 Q1_tracks,1293 Q2_tracks,1293 Q3_tracks,1293 galaxyEna,1293 galaxyEnaQ0Ba-1,1289 galaxyEnaQ0Ba-1-1,1289 galaxyEnaQ0Ba-1-1-11,1289 galaxyEnaQ0Ba-1-17,1289 galaxyEnaQ0Ba-2,1289 galaxyEnaQ1Ay-4,1289 galaxyEnaQ1Ay-4-2,1289 galaxyEnaQ1Ay-4-2-2,1289 galaxyEnaQ1Ay-43,1289 galaxyEnaQ1Ba-1-17,1289 galaxyEnaQ2Ay-120,1289 galaxyEnaQ2Ay-122,1289 galaxyEnaQ2Ay-4,1289 galaxyEnaQ2Ay-5,1289 galaxyEnaQ2Ay-6,1289 galaxyEnaQ3Ay-4,1289 galaxyEnaQ3Ay-5,1289 galaxyEnaQ3Ay-9,1289 galaxyEnaQ3B-1-1-7,1289 galaxyEnaQ3B-1-617-2,1289 igg_COVID_16,2 igg_COVID_16,4 igm_COVID_16,2 igm_COVID_16,4 16024819 multiz7way,1076 strainCons119way,2454 strainCons44way,2049 16287941 windowmaskerSdust,114 16bo133 strainCons44way,1065 17 cpgIslandExt,241 cpgIslandExtUnmasked,244 cpgIslandSuper,241 igg_COVID_17,2 igg_COVID_17,4 igm_COVID_17,2 igm_COVID_17,4 pbmShanghai,533 17-04-2023 variantMuts,488 17-may-2023 variantMuts,540 1701 vaccines,300 vaccines,307 174 swift,20 18 G_18Total,13 igg_COVID_18,2 igg_COVID_18,4 igm_COVID_18,2 igm_COVID_18,4 kimTranscripts,480 pbmShanghai,50 transcriptome,486 variantMuts,1323 variantMuts,1460 18-dec-2020 variantMuts,277 variantMuts,295 18-dec-2023 variantMuts,620 18-may-2022 variantMuts,376 variantMuts,390 variantMuts,404 181 kimIvtCov,194 182 Starr_Bloom,279 Starr_Bloom_bind,273 18218656 augustusGene,315 19 abEscape,766 augustusGene,335 bloomEscMabAvg,770 bloomEscMax,776 bloomEscSerumAvg,771 bloomEscTop,774 escape,773 igg_COVID_19,2 igg_COVID_19,4 igm_COVID_19,2 igm_COVID_19,4 mccoy,766 rappuoli,773 sarsCov2Phylo,1169 sarsCov2PhyloPub,768 sarsCov2PhyloPub,1302 19-020 strainCons119way,1128 19-027 strainCons119way,1133 190660 pyle,335 193 sarsCov2Phylo,940 sarsCov2Phylo,990 sarsCov2PhyloPub,1060 sarsCov2PhyloPub,1110 variantMuts,1247 variantMuts,1344 194 cd8escape,117 196 cpgIslandExt,619 cpgIslandExtUnmasked,622 cpgIslandSuper,619 19858363 multiz7way,1033 strainCons119way,2411 strainCons44way,2006 1987 cpgIslandExt,379 cpgIslandExt,616 cpgIslandExtUnmasked,382 cpgIslandExtUnmasked,619 cpgIslandSuper,379 cpgIslandSuper,616 19906713 iedb,130 1995 multiz7way,1115 strainCons119way,1832 strainCons119way,2493 strainCons44way,1427 strainCons44way,2088 1996 multiz7way,1002 strainCons119way,1830 strainCons119way,2380 strainCons44way,1425 strainCons44way,1975 1997 genscan,149 genscan,223 1998 genscan,167 genscan,204 1999 simpleRepeat,65 simpleRepeat,88 19a nextstrainClade,7 nextstrainFreq19A,1 nextstrainFreq19A,3 nextstrainSamples,297 nextstrainSamples19A,1 nextstrainSamples19A,6 sarsCov2Phylo,190 sarsCov2Phylo,218 sarsCov2Phylo,245 sarsCov2PhyloPub,197 sarsCov2PhyloPub,225 sarsCov2PhyloPub,252 19b nextstrainClade,8 nextstrainFreq19B,1 nextstrainFreq19B,3 nextstrainSamples,298 nextstrainSamples19B,1 nextstrainSamples19B,6 sarsCov2Phylo,180 sarsCov2PhyloPub,187 1a strainCons119way,1478 varskip1a,2 varskipVsl1a,3 1st-strand swift,37 2 CHX_24hr_2,4 CHX_24hr_2,8 CHX_5hr_2,4 CHX_5hr_2,8 CHX_7hr_2,4 CHX_7hr_2,8 Harr_24hr_2,4 Harr_24hr_2,8 Harr_5hr_2,4 Harr_5hr_2,8 Harr_7hr_2,4 Harr_7hr_2,8 IgG_Z-score-_COVID-19_patients,229 IgM_Z-score-_COVID-19_patients,229 LTM_24hr_2,4 LTM_24hr_2,8 LTM_5hr_2,4 LTM_5hr_2,8 LTM_7hr_2,4 LTM_7hr_2,8 PhyloCSF_minus_2,7 PhyloCSF_plus_2,3 PhyloCSF_plus_2,8 PhyloCSF_smooth,620 PhyloCSFpower,389 PhyloCSFpower,633 PhyloCSFpower,663 PhyloCSFpower,697 Q0_tracks,55 Q1_tracks,57 Q2_tracks,57 Q3_tracks,57 abEscape,623 augustusGene,142 augustusGene,337 bloomEscMabAvg,627 bloomEscMax,633 bloomEscSerumAvg,628 bloomEscTop,631 bpmIggCovidSum,238 bpmIgmCovidSum,238 cas13Crispr,64 cas13Crispr,139 cas13Crispr,347 cpgIslandExt,421 cpgIslandExt,426 cpgIslandExt,428 cpgIslandExt,434 cpgIslandExt,460 cpgIslandExt,475 cpgIslandExt,620 cpgIslandExtUnmasked,424 cpgIslandExtUnmasked,429 cpgIslandExtUnmasked,431 cpgIslandExtUnmasked,437 cpgIslandExtUnmasked,463 cpgIslandExtUnmasked,478 cpgIslandExtUnmasked,623 cpgIslandSuper,421 cpgIslandSuper,426 cpgIslandSuper,428 cpgIslandSuper,434 cpgIslandSuper,460 cpgIslandSuper,475 cpgIslandSuper,620 escape,630 galaxyEna,57 galaxyEnaQ0Ba-1,53 galaxyEnaQ0Ba-1-1,53 galaxyEnaQ0Ba-1-1-11,53 galaxyEnaQ0Ba-1-17,53 galaxyEnaQ0Ba-2,53 galaxyEnaQ1Ay-4,53 galaxyEnaQ1Ay-4-2,53 galaxyEnaQ1Ay-4-2-2,53 galaxyEnaQ1Ay-43,53 galaxyEnaQ1Ba-1-17,53 galaxyEnaQ2Ay-120,53 galaxyEnaQ2Ay-122,53 galaxyEnaQ2Ay-4,53 galaxyEnaQ2Ay-5,53 galaxyEnaQ2Ay-6,53 galaxyEnaQ3Ay-4,53 galaxyEnaQ3Ay-5,53 galaxyEnaQ3Ay-9,53 galaxyEnaQ3B-1-1-7,53 galaxyEnaQ3B-1-617-2,53 gordon2,173 gordon2,182 mRNA-seq_24hr_2,4 mRNA-seq_24hr_2,8 mRNA-seq_5hr_2,4 mRNA-seq_5hr_2,8 mRNA-seq_7hr_2,4 mRNA-seq_7hr_2,8 mccoy,623 microdel,52 microdel,60 multiz7way,633 multiz7way,1118 pbm,238 phyloGenes,31 phyloGenes,518 rapid,100 rappuoli,630 simpleRepeat,92 strainCons119way,2496 strainCons44way,2091 swift,75 treangen,328 vaccines,317 variantMuts,1045 variantMuts,1113 variantMuts,1383 varskip2,2 varskip2,5 windowmaskerSdust,111 2--approximately sarsCov2Phylo,1128 sarsCov2PhyloPub,1261 2-hydroxyl pyle,44 2.0 epitopes,35 iedb,119 20 cas13Crispr,180 cpgIslandExt,618 cpgIslandExtUnmasked,621 cpgIslandSuper,618 multiz7way,1029 multiz7way,1160 sarsCov2PhyloPub,772 strainCons119way,2407 strainCons119way,2538 strainCons44way,2002 strainCons44way,2133 variantMuts,1398 20-sep-2021 variantMuts,681 variantMuts,697 variantMuts,713 200 cpgIslandExt,271 cpgIslandExtUnmasked,274 cpgIslandSuper,271 2000 pdb,156 2002 multiz7way,1226 strainCons119way,2604 strainCons44way,2199 2003 augustusGene,333 multiz7way,1156 multiz7way,1267 pdb,54 strainCons119way,2534 strainCons119way,2645 strainCons44way,2129 strainCons44way,2240 2004 multiz7way,1200 strainCons119way,2578 strainCons44way,2173 unipCov2AliSwissprot,501 unipCov2Chain,730 unipCov2DisulfBond,726 unipCov2Domain,725 unipCov2Interest,384 unipCov2LocCytopl,725 unipCov2LocExtra,725 unipCov2LocSignal,726 unipCov2LocTransMemb,726 unipCov2Modif,729 unipCov2Mut,726 unipCov2Other,726 unipCov2Repeat,724 unipCov2Struct,728 2005 multiz7way,1070 multiz7way,1099 strainCons119way,1836 strainCons119way,1967 strainCons119way,2448 strainCons119way,2477 strainCons44way,1041 strainCons44way,1431 strainCons44way,1562 strainCons44way,2043 strainCons44way,2072 2006 strainCons119way,1450 strainCons44way,1032 windowmaskerSdust,107 2007 multiz7way,1244 strainCons119way,2622 strainCons44way,2217 2008 augustusGene,308 strainCons119way,1294 strainCons44way,1146 2009 strainCons119way,1472 2010 iedb,123 multiz7way,1027 sarsCov2Phylo,1136 sarsCov2PhyloPub,1269 strainCons119way,2405 strainCons44way,2000 2011 PhyloCSF_smooth,722 PhyloCSFpower,679 PhyloCSFpower,696 phyloGenes,500 phyloGenes,517 2012 strainCons119way,1325 unipCov2AliSwissprot,456 unipCov2Chain,685 unipCov2DisulfBond,681 unipCov2Domain,680 unipCov2Interest,339 unipCov2LocCytopl,680 unipCov2LocExtra,680 unipCov2LocSignal,681 unipCov2LocTransMemb,681 unipCov2Modif,684 unipCov2Mut,681 unipCov2Other,681 unipCov2Repeat,679 unipCov2Struct,683 2012-174 strainCons119way,1323 2013 sarsCov2Phylo,1040 sarsCov2PhyloPub,1160 2014 multiz7way,963 multiz7way,966 strainCons119way,2341 strainCons119way,2344 strainCons44way,1936 strainCons44way,1939 2015 nextstrainSamples,1076 phyloGenes,531 strainCons119way,1419 2017 rapid,133 2018 nextstrainClade,267 nextstrainFreq,402 nextstrainFreq,424 nextstrainGene,216 nextstrainParsimony,469 nextstrainSamples,1022 nextstrainSamples,1044 sarsCov2Phylo,1166 sarsCov2PhyloPub,1299 variantMuts,1456 2019 PhyloCSF_smooth,373 PhyloCSF_smooth,696 PhyloCSF_smooth,772 PhyloCSFpower,388 PhyloCSFpower,662 PhyloCSFpower,732 multiz7way,701 nextstrainClade,25 nextstrainFreq,23 nextstrainGene,23 nextstrainParsimony,42 nextstrainSamples,872 primers,263 sarsCov2Phylo,604 sarsCov2PhyloPub,631 sarsCov2PhyloPub,758 strainCons119way,99 strainCons119way,1056 strainCons119way,1060 strainCons119way,1084 strainCons119way,1088 strainCons119way,1092 strainCons119way,1096 strainCons119way,1144 strainCons119way,1167 strainCons119way,1251 strainCons119way,1278 strainCons119way,1282 vaccines,589 2019-12-31 nextstrainSamples,874 sarsCov2Phylo,606 sarsCov2PhyloPub,633 2019-2021 nextstrainSamples,39 2019-ncov epitopes,148 epitopes,182 epitopes,209 epitopes,239 epitopes,256 epitopes,277 epitopes,301 primers,266 2019-novel epitopes,76 epitopes,180 epitopes,336 2020 Calu3_07hpi,374 IgG_Z-score-_COVID-19_patients,442 IgM_Z-score-_COVID-19_patients,442 Kim_RNAs,13 Kim_TRS_sgmRNAs,13 Kim_non-TRS_sgmRNAs,13 ORFs,372 PhyloCSF_smooth,378 PhyloCSF_smooth,701 PhyloCSF_smooth,803 PhyloCSFpower,394 PhyloCSFpower,668 PhyloCSFpower,763 PhyloCSFpower,780 Q0_tracks,1269 Q1_tracks,1271 Q2_tracks,1271 Q3_tracks,1271 SHAPE,10 Starr_Bloom,276 Starr_Bloom_bind,270 Vero6_05hpi,374 Vero6_24hpi,374 abEscape,132 abEscape,186 abEscape,628 abEscape,764 abEscape,824 abEscape,854 abEscape,901 bloomEscMabAvg,136 bloomEscMabAvg,190 bloomEscMabAvg,632 bloomEscMabAvg,768 bloomEscMabAvg,828 bloomEscMabAvg,858 bloomEscMabAvg,905 bloomEscMax,142 bloomEscMax,196 bloomEscMax,638 bloomEscMax,774 bloomEscMax,834 bloomEscMax,864 bloomEscMax,911 bloomEscSerumAvg,137 bloomEscSerumAvg,191 bloomEscSerumAvg,633 bloomEscSerumAvg,769 bloomEscSerumAvg,829 bloomEscSerumAvg,859 bloomEscSerumAvg,906 bloomEscTop,140 bloomEscTop,194 bloomEscTop,636 bloomEscTop,772 bloomEscTop,832 bloomEscTop,862 bloomEscTop,909 bpmIggCovidSum,14 bpmIggCovidSum,451 bpmIgmCovidSum,14 bpmIgmCovidSum,451 cas13Crispr,30 cas13Crispr,181 cas13Crispr,507 cd8escape,15 crisprDet,109 epitopes,9 epitopes,345 escape,139 escape,193 escape,635 escape,771 escape,831 escape,861 escape,908 galaxyEna,1271 galaxyEnaQ0Ba-1,1267 galaxyEnaQ0Ba-1-1,1267 galaxyEnaQ0Ba-1-1-11,1267 galaxyEnaQ0Ba-1-17,1267 galaxyEnaQ0Ba-2,1267 galaxyEnaQ1Ay-4,1267 galaxyEnaQ1Ay-4-2,1267 galaxyEnaQ1Ay-4-2-2,1267 galaxyEnaQ1Ay-43,1267 galaxyEnaQ1Ba-1-17,1267 galaxyEnaQ2Ay-120,1267 galaxyEnaQ2Ay-122,1267 galaxyEnaQ2Ay-4,1267 galaxyEnaQ2Ay-5,1267 galaxyEnaQ2Ay-6,1267 galaxyEnaQ3Ay-4,1267 galaxyEnaQ3Ay-5,1267 galaxyEnaQ3Ay-9,1267 galaxyEnaQ3B-1-1-7,1267 galaxyEnaQ3B-1-617-2,1267 gap,16 gold,18 gordon2,24 gordon2,269 icshape,230 kimIvtCov,13 kimIvtCov,30 kimIvtCov,128 kimIvtCov,147 kimIvtCov,191 kimNp,10 kimNp,42 kimNp,123 kimRnaMod,11 kimRnaMod,43 kimRnaMod,248 kimTranscripts,13 kimTranscripts,150 kimTranscripts,250 kimTranscripts,291 kimTranscripts,478 mccoy,132 mccoy,186 mccoy,628 mccoy,764 mccoy,824 mccoy,854 mccoy,901 microdel,30 microdel,82 ncbiGeneBGP,20 ncbiProducts,23 nextstrainClade,26 nextstrainFreq,24 nextstrainGene,24 nextstrainParsimony,43 pbm,16 pbm,451 pbmShanghai,18 pbmShanghai,531 pond,31 pond,232 pond,242 potPathoIndel,14 potPathoIndel,238 problematicSites,296 problematicSites,557 problematicSites,582 problematicSites,584 problematicSites,607 pyle,235 pyle,304 pyle,331 rapid,368 rappuoli,139 rappuoli,193 rappuoli,635 rappuoli,771 rappuoli,831 rappuoli,861 rappuoli,908 rnaStructRangan,27 rnaStructRangan,109 rosettaMhc,336 rosettaMhc,356 rosettaMhc,395 sarsCov2Phylo,674 sarsCov2Phylo,965 sarsCov2Phylo,1010 sarsCov2Phylo,1013 sarsCov2Phylo,1068 sarsCov2Phylo,1093 sarsCov2Phylo,1095 sarsCov2Phylo,1118 sarsCov2PhyloPub,698 sarsCov2PhyloPub,762 sarsCov2PhyloPub,1053 sarsCov2PhyloPub,1085 sarsCov2PhyloPub,1130 sarsCov2PhyloPub,1133 sarsCov2PhyloPub,1188 sarsCov2PhyloPub,1213 sarsCov2PhyloPub,1215 sarsCov2PhyloPub,1251 spikeMuts,209 spikeMuts,213 strainCons119way,100 strainCons119way,1065 strainCons119way,1070 strainCons119way,1074 strainCons119way,1077 strainCons119way,1080 strainCons119way,1100 strainCons119way,1105 strainCons119way,1109 strainCons119way,1112 strainCons119way,1115 strainCons119way,1119 strainCons119way,1123 strainCons119way,1139 strainCons119way,1148 strainCons119way,1152 strainCons119way,1158 strainCons119way,1163 strainCons119way,1171 strainCons119way,1176 strainCons119way,1180 strainCons119way,1185 strainCons119way,1190 strainCons119way,1193 strainCons119way,1197 strainCons119way,1202 strainCons119way,1208 strainCons119way,1212 strainCons119way,1217 strainCons119way,1222 strainCons119way,1227 strainCons119way,1231 strainCons119way,1234 strainCons119way,1237 strainCons119way,1241 strainCons119way,1246 strainCons119way,1254 strainCons119way,1257 strainCons119way,1261 strainCons119way,1266 strainCons119way,1270 strainCons119way,1274 targets,20 targets,233 transcriptome,484 treangen,72 treangen,326 vaccines,544 vaccines,562 vaccines,608 variantMuts,274 variantMuts,292 variantMuts,310 variantMuts,326 variantMuts,633 variantMuts,664 variantMuts,680 variantMuts,695 variantMuts,711 variantMuts,1272 variantMuts,1321 variantMuts,1362 variantMuts,1370 variantMuts,1417 variantMuts,1434 weizmanOrfs,380 2020-01-05 sarsCov2Phylo,676 sarsCov2PhyloPub,700 2020-2021 spikeMuts,207 2020.02.12.946087 epitopes,350 2020.04.06.027805 poranHla1,291 poranHla2,291 2021 Q0_tracks,1339 Q1_tracks,1341 Q2_tracks,1341 Q3_tracks,1341 abEscape,113 abEscape,153 abEscape,213 abEscape,230 abEscape,722 articV4,30 bloomEscMabAvg,117 bloomEscMabAvg,157 bloomEscMabAvg,217 bloomEscMabAvg,234 bloomEscMabAvg,726 bloomEscMax,123 bloomEscMax,163 bloomEscMax,223 bloomEscMax,240 bloomEscMax,732 bloomEscSerumAvg,118 bloomEscSerumAvg,158 bloomEscSerumAvg,218 bloomEscSerumAvg,235 bloomEscSerumAvg,727 bloomEscTop,121 bloomEscTop,161 bloomEscTop,221 bloomEscTop,238 bloomEscTop,730 cd8escape,225 escape,120 escape,160 escape,220 escape,237 escape,729 galaxyEna,1341 galaxyEnaQ0Ba-1,1337 galaxyEnaQ0Ba-1-1,1337 galaxyEnaQ0Ba-1-1-11,1337 galaxyEnaQ0Ba-1-17,1337 galaxyEnaQ0Ba-2,1337 galaxyEnaQ1Ay-4,1337 galaxyEnaQ1Ay-4-2,1337 galaxyEnaQ1Ay-4-2-2,1337 galaxyEnaQ1Ay-43,1337 galaxyEnaQ1Ba-1-17,1337 galaxyEnaQ2Ay-120,1337 galaxyEnaQ2Ay-122,1337 galaxyEnaQ2Ay-4,1337 galaxyEnaQ2Ay-5,1337 galaxyEnaQ2Ay-6,1337 galaxyEnaQ3Ay-4,1337 galaxyEnaQ3Ay-5,1337 galaxyEnaQ3Ay-9,1337 galaxyEnaQ3B-1-1-7,1337 galaxyEnaQ3B-1-617-2,1337 mccoy,113 mccoy,153 mccoy,213 mccoy,230 mccoy,722 microdel,305 phyloGenes,456 phyloGenes,489 phyloGenes,565 phyloGenes,593 rappuoli,120 rappuoli,160 rappuoli,220 rappuoli,237 rappuoli,729 spikeMuts,10 spikeMuts,59 variantAaMutsV2_B_1_1_7,18 variantAaMutsV2_B_1_351,18 variantAaMutsV2_B_1_429,18 variantAaMutsV2_B_1_525,17 variantAaMutsV2_B_1_526,18 variantAaMutsV2_B_1_617_1,18 variantAaMutsV2_B_1_617_2,18 variantAaMutsV2_B_1_621,18 variantAaMutsV2_C_37,18 variantAaMutsV2_P_1,18 variantAaMuts_B_1_1_529,15 variantMuts,40 variantMuts,343 variantMuts,359 variantMuts,403 variantMuts,432 variantMuts,648 variantMuts,1107 variantMuts,1114 variantMuts,1399 variantNucMutsV2_B_1_1_7,17 variantNucMutsV2_B_1_351,17 variantNucMutsV2_B_1_429,17 variantNucMutsV2_B_1_525,16 variantNucMutsV2_B_1_526,17 variantNucMutsV2_B_1_617_1,17 variantNucMutsV2_B_1_617_2,17 variantNucMutsV2_B_1_621,17 variantNucMutsV2_C_37,17 variantNucMutsV2_P_1,17 variantNucMuts_B_1_1_529,17 2021-04-05 galaxyEnaQ3Ay-4,10 galaxyEnaQ3Ay-5,10 galaxyEnaQ3Ay-9,10 galaxyEnaQ3B-1-1-7,10 galaxyEnaQ3B-1-617-2,10 2021-07-05 galaxyEnaQ2Ay-120,10 galaxyEnaQ2Ay-122,10 galaxyEnaQ2Ay-4,10 galaxyEnaQ2Ay-5,10 galaxyEnaQ2Ay-6,10 galaxyEnaQ3Ay-4,12 galaxyEnaQ3Ay-5,12 galaxyEnaQ3Ay-9,12 galaxyEnaQ3B-1-1-7,12 galaxyEnaQ3B-1-617-2,12 2021-10-05 galaxyEnaQ1Ay-4,10 galaxyEnaQ1Ay-4-2,10 galaxyEnaQ1Ay-4-2-2,10 galaxyEnaQ1Ay-43,10 galaxyEnaQ1Ba-1-17,10 galaxyEnaQ2Ay-120,12 galaxyEnaQ2Ay-122,12 galaxyEnaQ2Ay-4,12 galaxyEnaQ2Ay-5,12 galaxyEnaQ2Ay-6,12 2022 articV4_1,30 pond,33 pond,38 pond,45 pond,294 recomb,9 recomb,39 recomb,82 recomb,353 resistPred,19 resistPred,143 variantAaMuts_BA_4,16 variantAaMuts_BA_5,16 variantMuts,375 variantMuts,389 variantMuts,417 variantMuts,446 variantMuts,464 variantMuts,506 variantMuts,520 variantMuts,539 variantMuts,1131 variantNucMuts_BA_4,16 variantNucMuts_BA_5,16 2022-01-05 galaxyEnaQ0Ba-1,10 galaxyEnaQ0Ba-1-1,10 galaxyEnaQ0Ba-1-1-11,10 galaxyEnaQ0Ba-1-17,10 galaxyEnaQ0Ba-2,10 galaxyEnaQ1Ay-4,12 galaxyEnaQ1Ay-4-2,12 galaxyEnaQ1Ay-4-2-2,12 galaxyEnaQ1Ay-43,12 galaxyEnaQ1Ba-1-17,12 2022-03-01 galaxyEnaQ0Ba-1-17,12 2022-03-06 galaxyEnaQ0Ba-1-1,12 2022-03-09 galaxyEnaQ0Ba-1,12 galaxyEnaQ0Ba-1-1-11,12 2022-03-12 galaxyEnaQ0Ba-2,12 20224823 sarsCov2Phylo,1143 sarsCov2PhyloPub,1276 2023 variantAaMuts_BA_2,15 variantAaMuts_BA_2_12_1,15 variantAaMuts_BA_2_75,16 variantAaMuts_BQ_1,15 variantAaMuts_CH_1_1,15 variantAaMuts_EG_5_1,15 variantAaMuts_XBB,15 variantAaMuts_XBB_1_16,15 variantAaMuts_XBB_1_5,15 variantAaMuts_XBB_1_9,15 variantAaMuts_XBB_2_3,15 variantMuts,485 variantMuts,557 variantMuts,576 variantMuts,591 variantMuts,606 variantMuts,619 variantMuts,1150 variantNucMuts_BA_2,15 variantNucMuts_BA_2_12_1,15 variantNucMuts_BA_2_75,15 variantNucMuts_BQ_1,15 variantNucMuts_CH_1_1,15 variantNucMuts_EG_5_1,15 variantNucMuts_XBB,15 variantNucMuts_XBB_1_16,15 variantNucMuts_XBB_1_5,15 variantNucMuts_XBB_1_9,15 variantNucMuts_XBB_2_3,15 2024 variantAaMuts_BA_2_86,15 variantAaMuts_HK_3,15 variantAaMuts_JN_1,15 variantAaMuts_XBB_1_5_70,15 variantMuts,453 variantMuts,474 variantMuts,495 variantMuts,528 variantMuts,546 variantMuts,565 variantMuts,1162 variantNucMuts_BA_2_86,15 variantNucMuts_HK_3,15 variantNucMuts_JN_1,15 variantNucMuts_XBB_1_5_70,15 203 cas13Crispr,87 2073-2087 PhyloCSF_smooth,776 20a nextstrainClade,9 nextstrainFreq20A,1 nextstrainFreq20A,3 nextstrainSamples,299 nextstrainSamples20A,1 nextstrainSamples20A,6 sarsCov2Phylo,262 sarsCov2Phylo,276 sarsCov2PhyloPub,269 sarsCov2PhyloPub,283 20b nextstrainFreq20B,1 nextstrainFreq20B,3 nextstrainSamples20B,1 nextstrainSamples20B,6 sarsCov2Phylo,304 sarsCov2PhyloPub,311 20c nextstrainFreq20C,1 nextstrainFreq20C,3 nextstrainSamples20C,1 nextstrainSamples20C,6 sarsCov2Phylo,295 sarsCov2PhyloPub,302 20cov-1l strainCons119way,1066 20d nextstrainFreq20D,1 nextstrainFreq20D,3 nextstrainSamples20D,1 nextstrainSamples20D,6 20f nextstrainFreq20F,1 nextstrainFreq20F,3 nextstrainSamples20F,1 nextstrainSamples20F,6 20g nextstrainFreq20G,1 nextstrainFreq20G,3 nextstrainSamples20G,1 nextstrainSamples20G,6 20h variantMuts,287 20i variantMuts,270 20j variantMuts,305 21 A_21Total,13 abEscape,156 abEscape,162 abEscape,620 articV4,29 bloomEscMabAvg,160 bloomEscMabAvg,166 bloomEscMabAvg,624 bloomEscMax,166 bloomEscMax,172 bloomEscMax,630 bloomEscSerumAvg,161 bloomEscSerumAvg,167 bloomEscSerumAvg,625 bloomEscTop,164 bloomEscTop,170 bloomEscTop,628 crisprDet,108 escape,2 escape,13 escape,163 escape,169 escape,627 mccoy,156 mccoy,162 mccoy,620 rappuoli,163 rappuoli,169 rappuoli,627 variantMuts,1369 21-nov-2023 variantMuts,607 211 pbmShanghai,85 213306 strainCons119way,1471 21559 vaccines,289 vaccines,296 vaccines,303 21685081 PhyloCSF_smooth,729 21744-21860 phyloGenes,202 21a nextstrainFreq21A_Delta,1 nextstrainFreq21A_Delta,4 nextstrainSamples21A_Delta,1 nextstrainSamples21A_Delta,7 variantMuts,322 21b nextstrainFreq21B_Kappa,1 nextstrainFreq21B_Kappa,4 nextstrainSamples21B_Kappa,1 nextstrainSamples21B_Kappa,7 variantMuts,707 21c variantMuts,660 21d nextstrainFreq21D_Eta,1 nextstrainFreq21D_Eta,4 nextstrainSamples21D_Eta,1 nextstrainSamples21D_Eta,7 variantMuts,676 21e nextstrainFreq21E_Theta,1 nextstrainFreq21E_Theta,4 nextstrainSamples21E_Theta,1 nextstrainSamples21E_Theta,7 21f nextstrainFreq21F_Iota,1 nextstrainFreq21F_Iota,4 nextstrainSamples21F_Iota,1 nextstrainSamples21F_Iota,7 variantMuts,691 21g nextstrainFreq21G_Lambda,1 nextstrainFreq21G_Lambda,4 nextstrainSamples21G_Lambda,1 nextstrainSamples21G_Lambda,7 variantMuts,629 21h nextstrainFreq21H_Mu,1 nextstrainFreq21H_Mu,4 nextstrainSamples21H_Mu,1 nextstrainSamples21H_Mu,7 variantMuts,645 21i nextstrainFreq21I_Delta,1 nextstrainFreq21I_Delta,4 nextstrainSamples21I_Delta,1 nextstrainSamples21I_Delta,7 21j nextstrainFreq21J_Delta,1 nextstrainFreq21J_Delta,4 nextstrainSamples21J_Delta,1 nextstrainSamples21J_Delta,7 21k variantMuts,339 21l variantMuts,356 22 phyloGenes,275 variantAaMuts_BA_2,14 variantAaMuts_BA_2_12_1,14 variantAaMuts_BA_2_75,15 variantAaMuts_BQ_1,14 variantAaMuts_CH_1_1,14 variantAaMuts_EG_5_1,14 variantAaMuts_XBB,14 variantAaMuts_XBB_1_16,14 variantAaMuts_XBB_1_5,14 variantAaMuts_XBB_1_9,14 variantAaMuts_XBB_2_3,14 windowmaskerSdust,110 22-mar-2023 variantMuts,486 22-nt cas13Crispr,305 22-nucleotide cas13Crispr,243 2200 strainCons119way,943 strainCons44way,891 22003-04nc_004718.30.885159sars-cov-1 multiz7way,702 22102590 unipCov2AliSwissprot,463 unipCov2Chain,692 unipCov2DisulfBond,688 unipCov2Domain,687 unipCov2Interest,346 unipCov2LocCytopl,687 unipCov2LocExtra,687 unipCov2LocSignal,688 unipCov2LocTransMemb,688 unipCov2Modif,691 unipCov2Mut,688 unipCov2Other,688 unipCov2Repeat,686 unipCov2Struct,690 225 rapid,341 229e multiz7way,721 strainCons119way,1408 22a variantMuts,372 22b variantMuts,386 22c variantMuts,400 22d variantMuts,414 22e variantMuts,429 22f variantMuts,443 23 epitopes,123 nextstrainClade,271 nextstrainFreq,406 nextstrainGene,220 nextstrainParsimony,473 nextstrainSamples,1026 unipCov2AliSwissprot,503 unipCov2Chain,732 unipCov2DisulfBond,728 unipCov2Domain,727 unipCov2Interest,386 unipCov2LocCytopl,727 unipCov2LocExtra,727 unipCov2LocSignal,728 unipCov2LocTransMemb,728 unipCov2Modif,731 unipCov2Mut,728 unipCov2Other,728 unipCov2Repeat,726 unipCov2Struct,730 233 strainCons119way,1200 23329690 sarsCov2Phylo,1046 sarsCov2PhyloPub,1166 235-42 pdb,161 23a variantMuts,461 23b variantMuts,482 23c variantMuts,503 23d variantMuts,517 23e variantMuts,536 23f variantMuts,554 23g variantMuts,573 23h variantMuts,588 23i variantMuts,603 variantMuts,616 24 Calu3_07hpi,106 Calu3_07hpi,268 ORFs,104 ORFs,266 Vero6_05hpi,106 Vero6_05hpi,268 Vero6_24hpi,106 Vero6_24hpi,268 augustusGene,311 epitopes,125 weizmanOrfs,112 weizmanOrfs,274 241 cd8escape,194 24hpi Vero6_24hpi,2 Vero6_24hpi,4 24hr CHX_24hr_1,3 CHX_24hr_1,7 CHX_24hr_2,3 CHX_24hr_2,7 Harr_24hr_1,3 Harr_24hr_1,7 Harr_24hr_2,3 Harr_24hr_2,7 LTM_24hr_1,3 LTM_24hr_1,7 LTM_24hr_2,3 LTM_24hr_2,7 mRNA-seq_24hr_1,3 mRNA-seq_24hr_1,7 mRNA-seq_24hr_2,3 mRNA-seq_24hr_2,7 25 genscan,225 sarsCov2Phylo,1015 sarsCov2PhyloPub,1135 strainCons119way,963 strainCons119way,969 strainCons119way,971 strainCons119way,977 strainCons44way,911 strainCons44way,917 strainCons44way,919 strainCons44way,925 vaccines,542 2500 nextstrainSamples,531 252 cd8escape,208 pond,259 25214632 multiz7way,973 strainCons119way,2351 strainCons44way,1946 25371430 nextstrainSamples,1082 25384 vaccines,290 vaccines,297 vaccines,304 253g.v1 variantMuts,693 25457-25582 phyloGenes,111 25524-25697 phyloGenes,227 25596-25697 phyloGenes,250 25814-25882 phyloGenes,287 26 B_26Total,13 I_26Total,13 gordon2,42 potPathoIndel,240 variantMuts,1416 26-nov-2021 variantMuts,346 261-82 cpgIslandExt,621 cpgIslandExtUnmasked,624 cpgIslandSuper,621 268 genscan,226 268-74 nextstrainSamples,1080 27 PhyloCSF_smooth,725 PhyloCSFpower,692 phyloGenes,513 simpleRepeat,91 272 sarsCov2Phylo,1172 sarsCov2PhyloPub,1305 273 strainCons44way,1040 279 rosettaMhc,95 28 E_28Total,13 abEscape,903 bloomEscMabAvg,907 bloomEscMax,913 bloomEscSerumAvg,908 bloomEscTop,911 escape,910 mccoy,903 pdb,159 rappuoli,910 sarsCov2PhyloPub,1253 28284-28577 phyloGenes,137 287 variantAaMuts_BA_2_75,11 variantAaMuts_BA_5,11 variantNucMuts_BA_5,12 28734-28955 phyloGenes,314 29 K_29Total,13 PhyloCSF_smooth,774 vaccines,606 variantAaMuts_BA_2_86,14 variantAaMuts_HK_3,14 variantAaMuts_JN_1,14 variantAaMuts_XBB_1_5_70,14 variantMuts,451 variantMuts,472 variantMuts,493 variantMuts,526 variantMuts,544 variantMuts,563 29-jul-2022 variantMuts,419 29.9 swift,49 29000 microdel,95 293 gordon2,51 29340210 nextstrainFreq,430 nextstrainSamples,1050 29745847 sarsCov2Phylo,1174 sarsCov2PhyloPub,1307 29750242 variantMuts,1463 29790939 nextstrainClade,274 nextstrainFreq,409 nextstrainGene,223 nextstrainParsimony,476 nextstrainSamples,1029 29902 IgG_Z-score-_COVID-19_patients,382 IgM_Z-score-_COVID-19_patients,382 artic,164 articV4,164 articV4_1,177 bpmIggCovidSum,391 bpmIgmCovidSum,391 cas13Crispr,449 contacts,377 kimRnaMod,211 kimTranscripts,429 ncbiGeneBGP,144 ncbiProducts,160 pbm,391 phyloGenes,426 poranHla1,239 poranHla2,239 rapid,318 swift,247 transcriptome,435 varskip,170 29903 unipCov2AliSwissprot,375 unipCov2Chain,605 unipCov2DisulfBond,601 unipCov2Domain,600 unipCov2Interest,281 unipCov2LocCytopl,600 unipCov2LocExtra,600 unipCov2LocSignal,601 unipCov2LocTransMemb,601 unipCov2Modif,604 unipCov2Mut,601 unipCov2Other,601 unipCov2Repeat,599 unipCov2Struct,603 29mammals PhyloCSF_smooth,416 PhyloCSFpower,431 2a varskip2b,6 2b varskip2b,2 varskip2b,5 2n cpgIslandExt,487 cpgIslandExtUnmasked,490 cpgIslandSuper,487 vaccines,336 2nd-strand swift,39 3 PhyloCSF_minus_3,7 PhyloCSF_plus_3,3 PhyloCSF_plus_3,8 PhyloCSF_smooth,622 PhyloCSF_smooth,805 PhyloCSFpower,395 PhyloCSFpower,669 PhyloCSFpower,755 Q0_tracks,92 Q0_tracks,319 Q1_tracks,94 Q1_tracks,321 Q2_tracks,94 Q2_tracks,321 Q3_tracks,94 Q3_tracks,321 Starr_Bloom,278 Starr_Bloom_bind,272 artic,27 augustusGene,140 cas13Crispr,45 cas13Crispr,86 cas13Crispr,276 cpgIslandExt,432 cpgIslandExt,462 cpgIslandExtUnmasked,435 cpgIslandExtUnmasked,465 cpgIslandSuper,432 cpgIslandSuper,462 galaxyEna,94 galaxyEna,321 galaxyEnaQ0Ba-1,90 galaxyEnaQ0Ba-1,317 galaxyEnaQ0Ba-1-1,90 galaxyEnaQ0Ba-1-1,317 galaxyEnaQ0Ba-1-1-11,90 galaxyEnaQ0Ba-1-1-11,317 galaxyEnaQ0Ba-1-17,90 galaxyEnaQ0Ba-1-17,317 galaxyEnaQ0Ba-2,90 galaxyEnaQ0Ba-2,317 galaxyEnaQ1Ay-4,90 galaxyEnaQ1Ay-4,317 galaxyEnaQ1Ay-4-2,90 galaxyEnaQ1Ay-4-2,317 galaxyEnaQ1Ay-4-2-2,90 galaxyEnaQ1Ay-4-2-2,317 galaxyEnaQ1Ay-43,90 galaxyEnaQ1Ay-43,317 galaxyEnaQ1Ba-1-17,90 galaxyEnaQ1Ba-1-17,317 galaxyEnaQ2Ay-120,90 galaxyEnaQ2Ay-120,317 galaxyEnaQ2Ay-122,90 galaxyEnaQ2Ay-122,317 galaxyEnaQ2Ay-4,90 galaxyEnaQ2Ay-4,317 galaxyEnaQ2Ay-5,90 galaxyEnaQ2Ay-5,317 galaxyEnaQ2Ay-6,90 galaxyEnaQ2Ay-6,317 galaxyEnaQ3Ay-4,90 galaxyEnaQ3Ay-4,317 galaxyEnaQ3Ay-5,90 galaxyEnaQ3Ay-5,317 galaxyEnaQ3Ay-9,90 galaxyEnaQ3Ay-9,317 galaxyEnaQ3B-1-1-7,90 galaxyEnaQ3B-1-1-7,317 galaxyEnaQ3B-1-617-2,90 galaxyEnaQ3B-1-617-2,317 icshape,62 kimMgiLdr3p,3 kimMgiLdr3p,6 kimMgiNc3p,3 kimMgiNc3p,9 kimNpLdr3pBreak,3 kimNpLdr3pBreak,6 kimNpNc3pBrk,3 kimNpNc3pBrk,6 kimTranscripts,301 multiz7way,396 pbmShanghai,315 phyloGenes,53 phyloGenes,547 poranHla1,74 poranHla2,74 primers,194 primers,294 resistPred,142 rfam,34 sarsCov2Phylo,1140 sarsCov2PhyloPub,1273 strainCons119way,738 strainCons44way,686 transcriptome,301 transcriptome,311 vaccines,322 3-months Q0_tracks,299 Q1_tracks,301 Q2_tracks,301 Q3_tracks,301 galaxyEna,301 galaxyEnaQ0Ba-1,297 galaxyEnaQ0Ba-1-1,297 galaxyEnaQ0Ba-1-1-11,297 galaxyEnaQ0Ba-1-17,297 galaxyEnaQ0Ba-2,297 galaxyEnaQ1Ay-4,297 galaxyEnaQ1Ay-4-2,297 galaxyEnaQ1Ay-4-2-2,297 galaxyEnaQ1Ay-43,297 galaxyEnaQ1Ba-1-17,297 galaxyEnaQ2Ay-120,297 galaxyEnaQ2Ay-122,297 galaxyEnaQ2Ay-4,297 galaxyEnaQ2Ay-5,297 galaxyEnaQ2Ay-6,297 galaxyEnaQ3Ay-4,297 galaxyEnaQ3Ay-5,297 galaxyEnaQ3Ay-9,297 galaxyEnaQ3B-1-1-7,297 galaxyEnaQ3B-1-617-2,297 3.1 augustusGene,24 3.5 contacts,114 contacts,165 30 kimRnaMod,99 multiz7way,605 multiz7way,1158 sarsCov2Phylo,1042 sarsCov2PhyloPub,1162 strainCons119way,656 strainCons119way,955 strainCons119way,2536 strainCons44way,604 strainCons44way,903 strainCons44way,2131 30-aug-2021 variantMuts,650 30-mar-2023 variantMuts,521 300 cpgIslandExt,6 cpgIslandExtUnmasked,9 cpgIslandSuper,6 3000 multiz7way,593 multiz7way,595 variantAaMutsV2_B_1_525,12 variantAaMutsV2_B_1_526,13 variantAaMutsV2_B_1_617_1,13 variantAaMutsV2_B_1_617_2,13 variantAaMutsV2_B_1_621,13 variantAaMutsV2_C_37,13 variantNucMutsV2_B_1_525,11 variantNucMutsV2_B_1_526,12 variantNucMutsV2_B_1_617_1,12 variantNucMutsV2_B_1_617_2,12 variantNucMutsV2_B_1_621,12 variantNucMutsV2_C_37,12 305 cd8escape,120 3094-3100 variantMuts,1461 31 multiz7way,613 multiz7way,619 multiz7way,621 multiz7way,627 variantMuts,1364 31231383 vaccines,593 31537640 PhyloCSF_smooth,778 31mer multiz7way,746 strainCons119way,1506 strainCons44way,1176 32 C_32Total,13 nextstrainSamples,1078 sarsCov2Phylo,1016 sarsCov2PhyloPub,1136 32012-06-13nc_019843.32.434930mers multiz7way,704 32330414 kimIvtCov,198 kimTranscripts,482 transcriptome,488 325-351 multiz7way,1101 strainCons119way,2479 strainCons44way,2074 32577641 PhyloCSF_smooth,807 32637955 treangen,330 32669681 sarsCov2Phylo,971 sarsCov2PhyloPub,1091 variantMuts,1278 32676598 pyle,308 32794443 sarsCov2Phylo,1018 sarsCov2PhyloPub,1138 32841599 Starr_Bloom,283 Starr_Bloom_bind,277 32895485 pbmShanghai,537 32906143 Calu3_07hpi,378 ORFs,376 Vero6_05hpi,378 Vero6_24hpi,378 weizmanOrfs,384 33 D_33Total,13 phyloGenes,245 33029559 rapid,373 332 gordon2,70 gordon2,144 33259788 abEscape,768 bloomEscMabAvg,772 bloomEscMax,778 bloomEscSerumAvg,773 bloomEscTop,776 escape,775 mccoy,768 rappuoli,775 33299993 abEscape,858 bloomEscMabAvg,862 bloomEscMax,868 bloomEscSerumAvg,863 bloomEscTop,866 escape,865 mccoy,858 rappuoli,865 33398278 abEscape,905 bloomEscMabAvg,909 bloomEscMax,915 bloomEscSerumAvg,910 bloomEscTop,913 escape,912 mccoy,905 rappuoli,912 33664060 cd8escape,231 34 nextstrainClade,270 nextstrainFreq,405 nextstrainGene,219 nextstrainParsimony,472 nextstrainSamples,1025 targets,98 variantMuts,1459 3400 strainCons119way,950 strainCons44way,898 345 multiz7way,969 strainCons119way,2347 strainCons44way,1942 35 epitopes,131 35325204 pond,300 356 strainCons119way,1394 35952714 recomb,359 36 abEscape,381 bloomEscMabAvg,385 bloomEscMax,391 bloomEscSerumAvg,386 bloomEscTop,389 escape,388 mccoy,381 rappuoli,388 vaccines,313 vaccines,316 3656447 cpgIslandExt,623 cpgIslandExtUnmasked,626 cpgIslandSuper,623 38 iedb,125 vaccines,612 39 Q0_tracks,1349 Q1_tracks,1351 Q2_tracks,1351 Q3_tracks,1351 galaxyEna,1351 galaxyEnaQ0Ba-1,1347 galaxyEnaQ0Ba-1-1,1347 galaxyEnaQ0Ba-1-1-11,1347 galaxyEnaQ0Ba-1-17,1347 galaxyEnaQ0Ba-2,1347 galaxyEnaQ1Ay-4,1347 galaxyEnaQ1Ay-4-2,1347 galaxyEnaQ1Ay-4-2-2,1347 galaxyEnaQ1Ay-43,1347 galaxyEnaQ1Ba-1-17,1347 galaxyEnaQ2Ay-120,1347 galaxyEnaQ2Ay-122,1347 galaxyEnaQ2Ay-4,1347 galaxyEnaQ2Ay-5,1347 galaxyEnaQ2Ay-6,1347 galaxyEnaQ3Ay-4,1347 galaxyEnaQ3Ay-5,1347 galaxyEnaQ3Ay-9,1347 galaxyEnaQ3B-1-1-7,1347 galaxyEnaQ3B-1-617-2,1347 phyloGenes,197 pond,297 3a kimRnaMod,14 3a.iorf1 phyloGenes,122 3a.iorf2 phyloGenes,271 3d contacts,72 resistPred,62 rosettaMhc,77 4 PhyloCSF_smooth,440 PhyloCSFpower,455 Q0_tracks,93 Q1_tracks,95 Q2_tracks,95 Q3_tracks,95 abEscape,135 abEscape,265 abEscape,598 articV4,27 bloomEscMabAvg,139 bloomEscMabAvg,269 bloomEscMabAvg,602 bloomEscMax,145 bloomEscMax,275 bloomEscMax,608 bloomEscSerumAvg,140 bloomEscSerumAvg,270 bloomEscSerumAvg,603 bloomEscTop,143 bloomEscTop,273 bloomEscTop,606 cas13Crispr,80 cd8escape,227 escape,142 escape,272 escape,605 galaxyEna,95 galaxyEnaQ0Ba-1,91 galaxyEnaQ0Ba-1-1,91 galaxyEnaQ0Ba-1-1-11,91 galaxyEnaQ0Ba-1-17,91 galaxyEnaQ0Ba-2,91 galaxyEnaQ1Ay-4,91 galaxyEnaQ1Ay-4-2,91 galaxyEnaQ1Ay-4-2-2,91 galaxyEnaQ1Ay-43,91 galaxyEnaQ1Ba-1-17,91 galaxyEnaQ2Ay-120,91 galaxyEnaQ2Ay-122,91 galaxyEnaQ2Ay-4,91 galaxyEnaQ2Ay-5,91 galaxyEnaQ2Ay-6,91 galaxyEnaQ3Ay-4,91 galaxyEnaQ3Ay-5,91 galaxyEnaQ3Ay-9,91 galaxyEnaQ3B-1-1-7,91 galaxyEnaQ3B-1-617-2,91 kimIvtCov,195 mccoy,135 mccoy,265 mccoy,598 multiz7way,1203 nextstrainFreq,426 nextstrainSamples,1046 phyloGenes,62 phyloGenes,71 phyloGenes,175 phyloGenes,447 phyloGenes,490 phyloGenes,586 pond,298 pyle,148 rappuoli,142 rappuoli,272 rappuoli,605 sarsCov2Phylo,1043 sarsCov2PhyloPub,1163 strainCons119way,2581 strainCons44way,2176 vaccines,320 variantAaMuts_BA_4,15 variantAaMuts_BA_5,15 4-fold strainCons119way,1734 strainCons44way,1329 4.1 articV4_1,27 40 cd8escape,130 cd8escape,163 epitopes,133 unipCov2AliSwissprot,458 unipCov2Chain,687 unipCov2DisulfBond,683 unipCov2Domain,682 unipCov2Interest,341 unipCov2LocCytopl,682 unipCov2LocExtra,682 unipCov2LocSignal,683 unipCov2LocTransMemb,683 unipCov2Modif,686 unipCov2Mut,683 unipCov2Other,683 unipCov2Repeat,681 unipCov2Struct,685 400 multiz7way,603 strainCons119way,953 strainCons44way,901 4000 strainCons119way,945 strainCons44way,893 401 igg_COVID_401,2 igg_COVID_401,4 igm_COVID_401,2 igm_COVID_401,4 4021 igg_COVID_4021,2 igg_COVID_4021,4 igm_COVID_4021,2 igm_COVID_4021,4 4022 igg_COVID_4022,2 igg_COVID_4022,4 igm_COVID_4022,2 igm_COVID_4022,4 403 microdel,99 404 igg_COVID_404,2 igg_COVID_404,4 igm_COVID_404,2 igm_COVID_404,4 405 igg_COVID_405,2 igg_COVID_405,4 igm_COVID_405,2 igm_COVID_405,4 406 igg_COVID_406,2 igg_COVID_406,4 igm_COVID_406,2 igm_COVID_406,4 407 igg_COVID_407,2 igg_COVID_407,4 igm_COVID_407,2 igm_COVID_407,4 408 igg_COVID_408,2 igg_COVID_408,4 igm_COVID_408,2 igm_COVID_408,4 409 igg_COVID_409,2 igg_COVID_409,4 igm_COVID_409,2 igm_COVID_409,4 41 phyloGenes,100 410 igg_COVID_410,2 igg_COVID_410,4 igm_COVID_410,2 igm_COVID_410,4 4121-4123 nextstrainClade,272 nextstrainFreq,407 nextstrainGene,221 nextstrainParsimony,474 nextstrainSamples,1027 414 igg_COVID_414,2 igg_COVID_414,4 igm_COVID_414,2 igm_COVID_414,4 415 igg_COVID_415,2 igg_COVID_415,4 igm_COVID_415,2 igm_COVID_415,4 416 igg_COVID_416,2 igg_COVID_416,4 igm_COVID_416,2 igm_COVID_416,4 419 igg_COVID_419,2 igg_COVID_419,4 igm_COVID_419,2 igm_COVID_419,4 42004-03nc_006213.12.589639human multiz7way,710 429 igg_COVID_429,2 igg_COVID_429,4 igm_COVID_429,2 igm_COVID_429,4 432 igg_COVID_432,2 igg_COVID_432,4 igm_COVID_432,2 igm_COVID_432,4 436 igg_COVID_436,2 igg_COVID_436,4 igm_COVID_436,2 igm_COVID_436,4 4371 igg_COVID_4371,2 igg_COVID_4371,4 igm_COVID_4371,2 igm_COVID_4371,4 4372 igg_COVID_4372,2 igg_COVID_4372,4 igm_COVID_4372,2 igm_COVID_4372,4 439 rosettaMhc,92 44 PhyloCSF_smooth,408 PhyloCSF_smooth,426 PhyloCSFpower,423 PhyloCSFpower,441 epitopes,135 epitopes,137 phyloGenes,603 strainCons44way,1 strainCons44way,7 strainCons44way,45 strainCons44way,77 strainCons44wayViewalign,6 strainCons44wayViewphastcons,8 strainCons44wayViewphyloP,7 strainName44way,7 strainPhastCons44way,3 strainPhyloP44way,3 44-way strainCons44way,1335 45 A_45Total,13 strainCons119way,1974 strainCons44way,1569 452q.v1 variantMuts,631 452r.v1 variantMuts,662 452r.v3 variantMuts,709 464-70 unipCov2AliSwissprot,505 unipCov2Chain,734 unipCov2DisulfBond,730 unipCov2Domain,729 unipCov2Interest,388 unipCov2LocCytopl,729 unipCov2LocExtra,729 unipCov2LocSignal,730 unipCov2LocTransMemb,730 unipCov2Modif,733 unipCov2Mut,730 unipCov2Other,730 unipCov2Repeat,728 unipCov2Struct,732 47 cas13Crispr,220 cas13Crispr,287 478k.v1 variantMuts,324 48 F_48Total,13 abEscape,174 bloomEscMabAvg,178 bloomEscMax,184 bloomEscSerumAvg,179 bloomEscTop,182 escape,181 mccoy,174 rappuoli,181 484a variantMuts,341 484k.v3 variantMuts,678 4d strainCons119way,1744 strainCons44way,1339 4gb nextstrainSamples,794 5 Calu3_07hpi,104 Calu3_07hpi,244 IgG_Z-score-_COVID-19_patients,153 IgM_Z-score-_COVID-19_patients,153 ORFs,102 ORFs,242 Q0_tracks,94 Q0_tracks,742 Q1_tracks,96 Q1_tracks,744 Q2_tracks,96 Q2_tracks,744 Q3_tracks,96 Q3_tracks,744 Starr_Bloom,280 Starr_Bloom_bind,274 Vero6_05hpi,104 Vero6_05hpi,244 Vero6_24hpi,104 Vero6_24hpi,244 augustusGene,312 bpmIggCovidSum,162 bpmIgmCovidSum,162 cpgIslandExt,464 cpgIslandExtUnmasked,467 cpgIslandSuper,464 galaxyEna,96 galaxyEna,744 galaxyEnaQ0Ba-1,92 galaxyEnaQ0Ba-1,740 galaxyEnaQ0Ba-1-1,92 galaxyEnaQ0Ba-1-1,740 galaxyEnaQ0Ba-1-1-11,92 galaxyEnaQ0Ba-1-1-11,740 galaxyEnaQ0Ba-1-17,92 galaxyEnaQ0Ba-1-17,740 galaxyEnaQ0Ba-2,92 galaxyEnaQ0Ba-2,740 galaxyEnaQ1Ay-4,92 galaxyEnaQ1Ay-4,740 galaxyEnaQ1Ay-4-2,92 galaxyEnaQ1Ay-4-2,740 galaxyEnaQ1Ay-4-2-2,92 galaxyEnaQ1Ay-4-2-2,740 galaxyEnaQ1Ay-43,92 galaxyEnaQ1Ay-43,740 galaxyEnaQ1Ba-1-17,92 galaxyEnaQ1Ba-1-17,740 galaxyEnaQ2Ay-120,92 galaxyEnaQ2Ay-120,740 galaxyEnaQ2Ay-122,92 galaxyEnaQ2Ay-122,740 galaxyEnaQ2Ay-4,92 galaxyEnaQ2Ay-4,740 galaxyEnaQ2Ay-5,92 galaxyEnaQ2Ay-5,740 galaxyEnaQ2Ay-6,92 galaxyEnaQ2Ay-6,740 galaxyEnaQ3Ay-4,92 galaxyEnaQ3Ay-4,740 galaxyEnaQ3Ay-5,92 galaxyEnaQ3Ay-5,740 galaxyEnaQ3Ay-9,92 galaxyEnaQ3Ay-9,740 galaxyEnaQ3B-1-1-7,92 galaxyEnaQ3B-1-1-7,740 galaxyEnaQ3B-1-617-2,92 galaxyEnaQ3B-1-617-2,740 icshape,60 kimMgiNc5p,3 kimMgiNc5p,9 kimNp5pBreak,3 kimNp5pBreak,6 kimTranscripts,165 pbm,162 phyloGenes,280 problematicSites,559 rapid,369 resistPred,106 sarsCov2Phylo,967 sarsCov2Phylo,1139 sarsCov2Phylo,1171 sarsCov2PhyloPub,1087 sarsCov2PhyloPub,1272 sarsCov2PhyloPub,1304 transcriptome,309 unipCov2AliSwissprot,504 unipCov2Chain,733 unipCov2DisulfBond,729 unipCov2Domain,728 unipCov2Interest,387 unipCov2LocCytopl,728 unipCov2LocExtra,728 unipCov2LocSignal,729 unipCov2LocTransMemb,729 unipCov2Modif,732 unipCov2Mut,729 unipCov2Other,729 unipCov2Repeat,727 unipCov2Struct,731 variantAaMutsV2_B_1_1_7,17 variantAaMutsV2_B_1_351,17 variantAaMutsV2_B_1_429,17 variantAaMutsV2_P_1,17 variantMuts,1274 variantNucMutsV2_B_1_1_7,16 variantNucMutsV2_B_1_351,16 variantNucMutsV2_B_1_429,16 variantNucMutsV2_P_1,16 weizmanOrfs,110 weizmanOrfs,250 5-10 publicAnnots,102 5-base gc5BaseBw,6 gc5BaseBw,27 50 cpgIslandExt,265 cpgIslandExtUnmasked,268 cpgIslandSuper,265 potPathoIndel,164 sarsCov2Phylo,640 sarsCov2PhyloPub,664 variantMuts,930 500 rosettaMhc,244 501 igg_COVID_501,2 igg_COVID_501,4 igm_COVID_501,2 igm_COVID_501,4 501y spikeMuts,226 501y.v2 variantMuts,290 501y.v3 variantMuts,308 502 igg_COVID_502,2 igg_COVID_502,4 igm_COVID_502,2 igm_COVID_502,4 508 igg_COVID_508,2 igg_COVID_508,4 igm_COVID_508,2 igm_COVID_508,4 509 igg_COVID_509,2 igg_COVID_509,4 igm_COVID_509,2 igm_COVID_509,4 51-3876 vaccines,299 vaccines,306 510 igg_COVID_510,2 igg_COVID_510,4 igm_COVID_510,2 igm_COVID_510,4 512 strainCons119way,1437 52 strainCons119way,104 targets,85 520 igg_COVID_520,2 igg_COVID_520,4 igm_COVID_520,2 igm_COVID_520,4 52004-04nc_006577.22.649716human multiz7way,716 522 igg_COVID_522,2 igg_COVID_522,4 igm_COVID_522,2 igm_COVID_522,4 5222 igg_COVID_5222,2 igg_COVID_5222,4 igm_COVID_5222,2 igm_COVID_5222,4 523 igg_COVID_523,2 igg_COVID_523,4 igm_COVID_523,2 igm_COVID_523,4 526 igg_COVID_526,2 igg_COVID_526,4 igm_COVID_526,2 igm_COVID_526,4 527 igg_COVID_527,2 igg_COVID_527,4 igm_COVID_527,2 igm_COVID_527,4 528 igg_COVID_528,2 igg_COVID_528,4 igm_COVID_528,2 igm_COVID_528,4 529 igg_COVID_529,2 igg_COVID_529,4 igm_COVID_529,2 igm_COVID_529,4 53 targets,93 530 igg_COVID_530,2 igg_COVID_530,4 igm_COVID_530,2 igm_COVID_530,4 531 igg_COVID_531,2 igg_COVID_531,4 igm_COVID_531,2 igm_COVID_531,4 532 igg_COVID_532,2 igg_COVID_532,4 igm_COVID_532,2 igm_COVID_532,4 533 igg_COVID_533,2 igg_COVID_533,4 igm_COVID_533,2 igm_COVID_533,4 5333 igg_COVID_5333,2 igg_COVID_5333,4 igm_COVID_5333,2 igm_COVID_5333,4 534 igg_COVID_534,2 igg_COVID_534,4 igm_COVID_534,2 igm_COVID_534,4 535 igg_COVID_535,2 igg_COVID_535,4 igm_COVID_535,2 igm_COVID_535,4 54-3879 vaccines,292 55 strainCons119way,73 558 phyloGenes,581 57 cd8escape,229 phyloGenes,222 573 variantAaMuts_BA_4,11 variantNucMuts_BA_4,12 573-80 simpleRepeat,93 5hpi Vero6_05hpi,2 Vero6_05hpi,4 5hr CHX_5hr_1,3 CHX_5hr_1,7 CHX_5hr_2,3 CHX_5hr_2,7 Harr_5hr_1,3 Harr_5hr_1,7 Harr_5hr_2,3 Harr_5hr_2,7 LTM_5hr_1,3 LTM_5hr_1,7 LTM_5hr_2,3 LTM_5hr_2,7 mRNA-seq_5hr_1,3 mRNA-seq_5hr_1,7 mRNA-seq_5hr_2,3 mRNA-seq_5hr_2,7 6 PhyloCSF_smooth,139 PhyloCSFpower,154 cd8escape,228 cpgIslandExt,466 cpgIslandExt,469 cpgIslandExt,477 cpgIslandExtUnmasked,469 cpgIslandExtUnmasked,472 cpgIslandExtUnmasked,480 cpgIslandSuper,466 cpgIslandSuper,469 cpgIslandSuper,477 epitopes,109 kimRnaMod,17 microdel,29 microdel,81 primers,296 605 igg_COVID_605,2 igg_COVID_605,4 igm_COVID_605,2 igm_COVID_605,4 607 igg_COVID_607,2 igg_COVID_607,4 igm_COVID_607,2 igm_COVID_607,4 608 igg_COVID_608,2 igg_COVID_608,4 igm_COVID_608,2 igm_COVID_608,4 609 recomb,355 61 H_61Total,13 61-tw strainCons119way,1098 610 igg_COVID_610,2 igg_COVID_610,4 igm_COVID_610,2 igm_COVID_610,4 62000-09nc_002645.12.983896human multiz7way,719 6202 multiz7way,970 strainCons119way,2348 strainCons44way,1943 637-44 augustusGene,313 64 vaccines,651 68.60 vaccines,294 7 Calu3_07hpi,113 Calu3_07hpi,246 ORFs,111 ORFs,244 Vero6_05hpi,113 Vero6_05hpi,246 Vero6_24hpi,113 Vero6_24hpi,246 articV4_1,29 cpgIslandExt,472 cpgIslandExt,480 cpgIslandExtUnmasked,475 cpgIslandExtUnmasked,483 cpgIslandSuper,472 cpgIslandSuper,480 multiz7way,8 multiz7way,22 pyle,333 sarsCov2Phylo,1031 sarsCov2PhyloPub,1151 weizmanOrfs,119 weizmanOrfs,252 70 variantMuts,884 variantMuts,933 708-15 multiz7way,1204 strainCons119way,2582 strainCons44way,2177 718 rosettaMhc,170 rosettaMhc,189 rosettaMhc,280 rosettaMhc,300 72.30 vaccines,301 vaccines,308 72004-03nc_005831.23.009141human multiz7way,722 727 igg_COVID_727,2 igg_COVID_727,4 igm_COVID_727,2 igm_COVID_727,4 73 phyloGenes,303 730 igg_COVID_730,2 igg_COVID_730,4 igm_COVID_730,2 igm_COVID_730,4 744 igg_COVID_744,2 igg_COVID_744,4 igm_COVID_744,2 igm_COVID_744,4 76 D_76Total,13 7713447 multiz7way,1121 strainCons119way,2499 strainCons44way,2094 772-80 sarsCov2Phylo,1044 sarsCov2PhyloPub,1164 776 poranHla1,42 poranHla2,42 78 variantAaMutsV2_P_1,13 variantNucMutsV2_P_1,12 78-94 genscan,228 7875 icshape,134 icshape,154 nextstrainFreq,223 nextstrainFreq,243 7929 recomb,356 793 variantAaMutsV2_B_1_351,13 variantNucMutsV2_B_1_351,12 7a kimRnaMod,18 7b kimRnaMod,19 transcriptome,161 7hpi Calu3_07hpi,2 Calu3_07hpi,4 7hr CHX_7hr_1,3 CHX_7hr_1,7 CHX_7hr_2,3 CHX_7hr_2,7 Harr_7hr_1,3 Harr_7hr_1,7 Harr_7hr_2,3 Harr_7hr_2,7 LTM_7hr_1,3 LTM_7hr_1,7 LTM_7hr_2,3 LTM_7hr_2,7 mRNA-seq_7hr_1,3 mRNA-seq_7hr_1,7 mRNA-seq_7hr_2,3 mRNA-seq_7hr_2,7 8 Q0_tracks,1292 Q1_tracks,1294 Q2_tracks,1294 Q3_tracks,1294 galaxyEna,1294 galaxyEnaQ0Ba-1,1290 galaxyEnaQ0Ba-1-1,1290 galaxyEnaQ0Ba-1-1-11,1290 galaxyEnaQ0Ba-1-17,1290 galaxyEnaQ0Ba-2,1290 galaxyEnaQ1Ay-4,1290 galaxyEnaQ1Ay-4-2,1290 galaxyEnaQ1Ay-4-2-2,1290 galaxyEnaQ1Ay-43,1290 galaxyEnaQ1Ba-1-17,1290 galaxyEnaQ2Ay-120,1290 galaxyEnaQ2Ay-122,1290 galaxyEnaQ2Ay-4,1290 galaxyEnaQ2Ay-5,1290 galaxyEnaQ2Ay-6,1290 galaxyEnaQ3Ay-4,1290 galaxyEnaQ3Ay-5,1290 galaxyEnaQ3Ay-9,1290 galaxyEnaQ3B-1-1-7,1290 galaxyEnaQ3B-1-617-2,1290 icshape,229 kimRnaMod,20 multiz7way,1073 sarsCov2Phylo,1168 sarsCov2PhyloPub,1301 strainCons119way,2451 strainCons44way,2046 80 pdb,42 pdb,120 pdb,125 variantMuts,887 802 cas13Crispr,46 cas13Crispr,277 80s Calu3_07hpi,156 ORFs,154 Vero6_05hpi,156 Vero6_24hpi,156 weizmanOrfs,162 8201 rapid,356 83 targets,89 8491 contacts,166 8583911 multiz7way,1008 strainCons119way,2386 strainCons44way,1981 8804 cas13Crispr,63 cas13Crispr,102 cas13Crispr,138 cas13Crispr,292 cas13Crispr,346 8805 cas13Crispr,79 9 Calu3_07hpi,376 ORFs,374 Vero6_05hpi,376 Vero6_24hpi,376 cpgIslandExt,482 cpgIslandExtUnmasked,485 cpgIslandSuper,482 problematicSites,609 resistPred,94 rosettaMhc,249 sarsCov2Phylo,1120 weizmanOrfs,382 9-aug-2023 variantMuts,558 9-feb-2023 variantMuts,507 90 strainCons119way,962 strainCons119way,966 strainCons119way,974 strainCons119way,978 strainCons44way,910 strainCons44way,914 strainCons44way,922 strainCons44way,926 91 multiz7way,611 multiz7way,629 strainCons119way,961 strainCons119way,979 strainCons44way,909 strainCons44way,927 910 multiz7way,598 strainCons119way,948 strainCons44way,896 914-921.e10 kimIvtCov,196 9149143 genscan,230 93 unipCov2AliSwissprot,166 unipCov2Chain,419 unipCov2DisulfBond,415 unipCov2Domain,414 unipCov2Interest,95 unipCov2LocCytopl,414 unipCov2LocExtra,414 unipCov2LocSignal,415 unipCov2LocTransMemb,415 unipCov2Modif,418 unipCov2Mut,415 unipCov2Other,415 unipCov2Repeat,413 unipCov2Struct,417 93-104 multiz7way,1006 strainCons119way,2384 strainCons44way,1979 936 vaccines,82 94 G_94Total,13 9400 multiz7way,600 944 potPathoIndel,109 97 phyloGenes,126 98 vaccines,610 9838 variantAaMutsV2_B_1_1_7,13 variantNucMutsV2_B_1_1_7,12 9862982 simpleRepeat,95 99 poranHla1,26 poranHla2,26 vaccines,645 vaccines,653 vaccines,655 993-1005 multiz7way,1119 strainCons119way,2497 strainCons44way,2092 994-997 recomb,357 999 pyle,119 9mer rosettaMhc,93 _ variantMuts,769 a A_120Max,2 A_120Total,2 A_120Total,11 A_21Max,2 A_21Total,2 A_21Total,11 A_45Max,2 A_45Total,2 A_45Total,11 Calu3_07hpi,33 Calu3_07hpi,71 Calu3_07hpi,91 Calu3_07hpi,182 Calu3_07hpi,351 IgG_Z-score-_COVID-19_patients,20 IgG_Z-score-_COVID-19_patients,222 IgG_Z-score-_COVID-19_patients,313 IgG_Z-score-_COVID-19_patients,360 IgM_Z-score-_COVID-19_patients,20 IgM_Z-score-_COVID-19_patients,222 IgM_Z-score-_COVID-19_patients,313 IgM_Z-score-_COVID-19_patients,360 Kim_TRS_sgmRNAs,15 Kim_non-TRS_sgmRNAs,15 ORFs,31 ORFs,69 ORFs,89 ORFs,180 ORFs,349 PhyloCSF_smooth,254 PhyloCSF_smooth,320 PhyloCSF_smooth,422 PhyloCSF_smooth,434 PhyloCSF_smooth,536 PhyloCSF_smooth,550 PhyloCSF_smooth,710 PhyloCSFpower,9 PhyloCSFpower,269 PhyloCSFpower,335 PhyloCSFpower,437 PhyloCSFpower,449 PhyloCSFpower,551 PhyloCSFpower,565 PhyloCSFpower,681 PhyloCSFpower,729 Q0_tracks,163 Q0_tracks,233 Q0_tracks,284 Q0_tracks,438 Q0_tracks,493 Q0_tracks,531 Q0_tracks,789 Q0_tracks,794 Q0_tracks,838 Q0_tracks,872 Q0_tracks,890 Q0_tracks,901 Q0_tracks,906 Q0_tracks,928 Q0_tracks,933 Q0_tracks,994 Q0_tracks,1257 Q0_tracks,1264 Q0_tracks,1329 Q0_tracks,1338 Q1_tracks,7 Q1_tracks,14 Q1_tracks,165 Q1_tracks,235 Q1_tracks,286 Q1_tracks,440 Q1_tracks,495 Q1_tracks,533 Q1_tracks,791 Q1_tracks,796 Q1_tracks,840 Q1_tracks,874 Q1_tracks,892 Q1_tracks,903 Q1_tracks,908 Q1_tracks,930 Q1_tracks,935 Q1_tracks,996 Q1_tracks,1259 Q1_tracks,1266 Q1_tracks,1331 Q1_tracks,1340 Q2_tracks,165 Q2_tracks,235 Q2_tracks,286 Q2_tracks,440 Q2_tracks,495 Q2_tracks,533 Q2_tracks,791 Q2_tracks,796 Q2_tracks,840 Q2_tracks,874 Q2_tracks,892 Q2_tracks,903 Q2_tracks,908 Q2_tracks,930 Q2_tracks,935 Q2_tracks,996 Q2_tracks,1259 Q2_tracks,1266 Q2_tracks,1331 Q2_tracks,1340 Q3_tracks,165 Q3_tracks,235 Q3_tracks,286 Q3_tracks,440 Q3_tracks,495 Q3_tracks,533 Q3_tracks,791 Q3_tracks,796 Q3_tracks,840 Q3_tracks,874 Q3_tracks,892 Q3_tracks,903 Q3_tracks,908 Q3_tracks,930 Q3_tracks,935 Q3_tracks,996 Q3_tracks,1259 Q3_tracks,1266 Q3_tracks,1331 Q3_tracks,1340 Starr_Bloom,36 Starr_Bloom,41 Starr_Bloom,47 Starr_Bloom,85 Starr_Bloom,92 Starr_Bloom,98 Starr_Bloom,124 Starr_Bloom,130 Starr_Bloom,136 Starr_Bloom,140 Starr_Bloom_bind,33 Starr_Bloom_bind,38 Starr_Bloom_bind,44 Starr_Bloom_bind,79 Starr_Bloom_bind,92 Starr_Bloom_bind,118 Starr_Bloom_bind,124 Starr_Bloom_bind,130 Starr_Bloom_bind,134 Vero6_05hpi,33 Vero6_05hpi,71 Vero6_05hpi,91 Vero6_05hpi,182 Vero6_05hpi,351 Vero6_24hpi,33 Vero6_24hpi,71 Vero6_24hpi,91 Vero6_24hpi,182 Vero6_24hpi,351 abEscape,83 abEscape,118 abEscape,158 abEscape,204 abEscape,239 abEscape,297 abEscape,363 abEscape,367 abEscape,407 abEscape,518 abEscape,522 abEscape,553 abEscape,557 abEscape,561 abEscape,774 abEscape,830 abEscape,880 abEscape,894 addgene,56 addgene,121 addgene,130 addgene,133 addgene,136 addgene,181 artic,38 artic,96 artic,143 articV4,41 articV4,96 articV4,143 articV4_1,52 articV4_1,109 articV4_1,156 augustusGene,116 augustusGene,128 augustusGene,152 augustusGene,215 augustusGene,218 augustusGene,233 augustusGene,323 augustusGene,328 bloomEscMabAvg,87 bloomEscMabAvg,122 bloomEscMabAvg,162 bloomEscMabAvg,208 bloomEscMabAvg,243 bloomEscMabAvg,301 bloomEscMabAvg,367 bloomEscMabAvg,371 bloomEscMabAvg,411 bloomEscMabAvg,522 bloomEscMabAvg,526 bloomEscMabAvg,557 bloomEscMabAvg,561 bloomEscMabAvg,565 bloomEscMabAvg,778 bloomEscMabAvg,834 bloomEscMabAvg,884 bloomEscMabAvg,898 bloomEscMax,93 bloomEscMax,128 bloomEscMax,168 bloomEscMax,214 bloomEscMax,249 bloomEscMax,307 bloomEscMax,373 bloomEscMax,377 bloomEscMax,417 bloomEscMax,528 bloomEscMax,532 bloomEscMax,563 bloomEscMax,567 bloomEscMax,571 bloomEscMax,784 bloomEscMax,840 bloomEscMax,890 bloomEscMax,904 bloomEscSerumAvg,88 bloomEscSerumAvg,123 bloomEscSerumAvg,163 bloomEscSerumAvg,209 bloomEscSerumAvg,244 bloomEscSerumAvg,302 bloomEscSerumAvg,368 bloomEscSerumAvg,372 bloomEscSerumAvg,412 bloomEscSerumAvg,523 bloomEscSerumAvg,527 bloomEscSerumAvg,558 bloomEscSerumAvg,562 bloomEscSerumAvg,566 bloomEscSerumAvg,779 bloomEscSerumAvg,835 bloomEscSerumAvg,885 bloomEscSerumAvg,899 bloomEscTop,91 bloomEscTop,126 bloomEscTop,166 bloomEscTop,212 bloomEscTop,247 bloomEscTop,305 bloomEscTop,371 bloomEscTop,375 bloomEscTop,415 bloomEscTop,526 bloomEscTop,530 bloomEscTop,561 bloomEscTop,565 bloomEscTop,569 bloomEscTop,782 bloomEscTop,838 bloomEscTop,888 bloomEscTop,902 bpmIggCovidSum,29 bpmIggCovidSum,231 bpmIggCovidSum,322 bpmIggCovidSum,369 bpmIgmCovidSum,29 bpmIgmCovidSum,231 bpmIgmCovidSum,322 bpmIgmCovidSum,369 cas13Crispr,83 cas13Crispr,237 cas13Crispr,381 cas13Crispr,428 cas13Crispr,512 cd8escape,173 cd8escape,200 contacts,162 contacts,193 contacts,214 contacts,309 contacts,356 cpgIslandExt,43 cpgIslandExt,50 cpgIslandExt,54 cpgIslandExt,128 cpgIslandExt,166 cpgIslandExt,236 cpgIslandExt,590 cpgIslandExt,593 cpgIslandExtUnmasked,46 cpgIslandExtUnmasked,53 cpgIslandExtUnmasked,57 cpgIslandExtUnmasked,131 cpgIslandExtUnmasked,169 cpgIslandExtUnmasked,239 cpgIslandExtUnmasked,593 cpgIslandExtUnmasked,596 cpgIslandSuper,43 cpgIslandSuper,50 cpgIslandSuper,54 cpgIslandSuper,128 cpgIslandSuper,166 cpgIslandSuper,236 cpgIslandSuper,590 cpgIslandSuper,593 crisprDet,79 crisprDet,124 epitopes,104 epitopes,268 epitopes,319 epitopes,329 escape,90 escape,125 escape,165 escape,211 escape,246 escape,304 escape,370 escape,374 escape,414 escape,525 escape,529 escape,560 escape,564 escape,568 escape,781 escape,837 escape,887 escape,901 galaxyEna,165 galaxyEna,235 galaxyEna,286 galaxyEna,440 galaxyEna,495 galaxyEna,533 galaxyEna,791 galaxyEna,796 galaxyEna,840 galaxyEna,874 galaxyEna,892 galaxyEna,903 galaxyEna,908 galaxyEna,930 galaxyEna,935 galaxyEna,996 galaxyEna,1259 galaxyEna,1266 galaxyEna,1331 galaxyEna,1340 galaxyEnaQ0Ba-1,161 galaxyEnaQ0Ba-1,231 galaxyEnaQ0Ba-1,282 galaxyEnaQ0Ba-1,436 galaxyEnaQ0Ba-1,491 galaxyEnaQ0Ba-1,529 galaxyEnaQ0Ba-1,787 galaxyEnaQ0Ba-1,792 galaxyEnaQ0Ba-1,836 galaxyEnaQ0Ba-1,870 galaxyEnaQ0Ba-1,888 galaxyEnaQ0Ba-1,899 galaxyEnaQ0Ba-1,904 galaxyEnaQ0Ba-1,926 galaxyEnaQ0Ba-1,931 galaxyEnaQ0Ba-1,992 galaxyEnaQ0Ba-1,1255 galaxyEnaQ0Ba-1,1262 galaxyEnaQ0Ba-1,1327 galaxyEnaQ0Ba-1,1336 galaxyEnaQ0Ba-1-1,161 galaxyEnaQ0Ba-1-1,231 galaxyEnaQ0Ba-1-1,282 galaxyEnaQ0Ba-1-1,436 galaxyEnaQ0Ba-1-1,491 galaxyEnaQ0Ba-1-1,529 galaxyEnaQ0Ba-1-1,787 galaxyEnaQ0Ba-1-1,792 galaxyEnaQ0Ba-1-1,836 galaxyEnaQ0Ba-1-1,870 galaxyEnaQ0Ba-1-1,888 galaxyEnaQ0Ba-1-1,899 galaxyEnaQ0Ba-1-1,904 galaxyEnaQ0Ba-1-1,926 galaxyEnaQ0Ba-1-1,931 galaxyEnaQ0Ba-1-1,992 galaxyEnaQ0Ba-1-1,1255 galaxyEnaQ0Ba-1-1,1262 galaxyEnaQ0Ba-1-1,1327 galaxyEnaQ0Ba-1-1,1336 galaxyEnaQ0Ba-1-1-11,161 galaxyEnaQ0Ba-1-1-11,231 galaxyEnaQ0Ba-1-1-11,282 galaxyEnaQ0Ba-1-1-11,436 galaxyEnaQ0Ba-1-1-11,491 galaxyEnaQ0Ba-1-1-11,529 galaxyEnaQ0Ba-1-1-11,787 galaxyEnaQ0Ba-1-1-11,792 galaxyEnaQ0Ba-1-1-11,836 galaxyEnaQ0Ba-1-1-11,870 galaxyEnaQ0Ba-1-1-11,888 galaxyEnaQ0Ba-1-1-11,899 galaxyEnaQ0Ba-1-1-11,904 galaxyEnaQ0Ba-1-1-11,926 galaxyEnaQ0Ba-1-1-11,931 galaxyEnaQ0Ba-1-1-11,992 galaxyEnaQ0Ba-1-1-11,1255 galaxyEnaQ0Ba-1-1-11,1262 galaxyEnaQ0Ba-1-1-11,1327 galaxyEnaQ0Ba-1-1-11,1336 galaxyEnaQ0Ba-1-17,161 galaxyEnaQ0Ba-1-17,231 galaxyEnaQ0Ba-1-17,282 galaxyEnaQ0Ba-1-17,436 galaxyEnaQ0Ba-1-17,491 galaxyEnaQ0Ba-1-17,529 galaxyEnaQ0Ba-1-17,787 galaxyEnaQ0Ba-1-17,792 galaxyEnaQ0Ba-1-17,836 galaxyEnaQ0Ba-1-17,870 galaxyEnaQ0Ba-1-17,888 galaxyEnaQ0Ba-1-17,899 galaxyEnaQ0Ba-1-17,904 galaxyEnaQ0Ba-1-17,926 galaxyEnaQ0Ba-1-17,931 galaxyEnaQ0Ba-1-17,992 galaxyEnaQ0Ba-1-17,1255 galaxyEnaQ0Ba-1-17,1262 galaxyEnaQ0Ba-1-17,1327 galaxyEnaQ0Ba-1-17,1336 galaxyEnaQ0Ba-2,161 galaxyEnaQ0Ba-2,231 galaxyEnaQ0Ba-2,282 galaxyEnaQ0Ba-2,436 galaxyEnaQ0Ba-2,491 galaxyEnaQ0Ba-2,529 galaxyEnaQ0Ba-2,787 galaxyEnaQ0Ba-2,792 galaxyEnaQ0Ba-2,836 galaxyEnaQ0Ba-2,870 galaxyEnaQ0Ba-2,888 galaxyEnaQ0Ba-2,899 galaxyEnaQ0Ba-2,904 galaxyEnaQ0Ba-2,926 galaxyEnaQ0Ba-2,931 galaxyEnaQ0Ba-2,992 galaxyEnaQ0Ba-2,1255 galaxyEnaQ0Ba-2,1262 galaxyEnaQ0Ba-2,1327 galaxyEnaQ0Ba-2,1336 galaxyEnaQ1Ay-4,161 galaxyEnaQ1Ay-4,231 galaxyEnaQ1Ay-4,282 galaxyEnaQ1Ay-4,436 galaxyEnaQ1Ay-4,491 galaxyEnaQ1Ay-4,529 galaxyEnaQ1Ay-4,787 galaxyEnaQ1Ay-4,792 galaxyEnaQ1Ay-4,836 galaxyEnaQ1Ay-4,870 galaxyEnaQ1Ay-4,888 galaxyEnaQ1Ay-4,899 galaxyEnaQ1Ay-4,904 galaxyEnaQ1Ay-4,926 galaxyEnaQ1Ay-4,931 galaxyEnaQ1Ay-4,992 galaxyEnaQ1Ay-4,1255 galaxyEnaQ1Ay-4,1262 galaxyEnaQ1Ay-4,1327 galaxyEnaQ1Ay-4,1336 galaxyEnaQ1Ay-4-2,161 galaxyEnaQ1Ay-4-2,231 galaxyEnaQ1Ay-4-2,282 galaxyEnaQ1Ay-4-2,436 galaxyEnaQ1Ay-4-2,491 galaxyEnaQ1Ay-4-2,529 galaxyEnaQ1Ay-4-2,787 galaxyEnaQ1Ay-4-2,792 galaxyEnaQ1Ay-4-2,836 galaxyEnaQ1Ay-4-2,870 galaxyEnaQ1Ay-4-2,888 galaxyEnaQ1Ay-4-2,899 galaxyEnaQ1Ay-4-2,904 galaxyEnaQ1Ay-4-2,926 galaxyEnaQ1Ay-4-2,931 galaxyEnaQ1Ay-4-2,992 galaxyEnaQ1Ay-4-2,1255 galaxyEnaQ1Ay-4-2,1262 galaxyEnaQ1Ay-4-2,1327 galaxyEnaQ1Ay-4-2,1336 galaxyEnaQ1Ay-4-2-2,161 galaxyEnaQ1Ay-4-2-2,231 galaxyEnaQ1Ay-4-2-2,282 galaxyEnaQ1Ay-4-2-2,436 galaxyEnaQ1Ay-4-2-2,491 galaxyEnaQ1Ay-4-2-2,529 galaxyEnaQ1Ay-4-2-2,787 galaxyEnaQ1Ay-4-2-2,792 galaxyEnaQ1Ay-4-2-2,836 galaxyEnaQ1Ay-4-2-2,870 galaxyEnaQ1Ay-4-2-2,888 galaxyEnaQ1Ay-4-2-2,899 galaxyEnaQ1Ay-4-2-2,904 galaxyEnaQ1Ay-4-2-2,926 galaxyEnaQ1Ay-4-2-2,931 galaxyEnaQ1Ay-4-2-2,992 galaxyEnaQ1Ay-4-2-2,1255 galaxyEnaQ1Ay-4-2-2,1262 galaxyEnaQ1Ay-4-2-2,1327 galaxyEnaQ1Ay-4-2-2,1336 galaxyEnaQ1Ay-43,161 galaxyEnaQ1Ay-43,231 galaxyEnaQ1Ay-43,282 galaxyEnaQ1Ay-43,436 galaxyEnaQ1Ay-43,491 galaxyEnaQ1Ay-43,529 galaxyEnaQ1Ay-43,787 galaxyEnaQ1Ay-43,792 galaxyEnaQ1Ay-43,836 galaxyEnaQ1Ay-43,870 galaxyEnaQ1Ay-43,888 galaxyEnaQ1Ay-43,899 galaxyEnaQ1Ay-43,904 galaxyEnaQ1Ay-43,926 galaxyEnaQ1Ay-43,931 galaxyEnaQ1Ay-43,992 galaxyEnaQ1Ay-43,1255 galaxyEnaQ1Ay-43,1262 galaxyEnaQ1Ay-43,1327 galaxyEnaQ1Ay-43,1336 galaxyEnaQ1Ba-1-17,161 galaxyEnaQ1Ba-1-17,231 galaxyEnaQ1Ba-1-17,282 galaxyEnaQ1Ba-1-17,436 galaxyEnaQ1Ba-1-17,491 galaxyEnaQ1Ba-1-17,529 galaxyEnaQ1Ba-1-17,787 galaxyEnaQ1Ba-1-17,792 galaxyEnaQ1Ba-1-17,836 galaxyEnaQ1Ba-1-17,870 galaxyEnaQ1Ba-1-17,888 galaxyEnaQ1Ba-1-17,899 galaxyEnaQ1Ba-1-17,904 galaxyEnaQ1Ba-1-17,926 galaxyEnaQ1Ba-1-17,931 galaxyEnaQ1Ba-1-17,992 galaxyEnaQ1Ba-1-17,1255 galaxyEnaQ1Ba-1-17,1262 galaxyEnaQ1Ba-1-17,1327 galaxyEnaQ1Ba-1-17,1336 galaxyEnaQ2Ay-120,161 galaxyEnaQ2Ay-120,231 galaxyEnaQ2Ay-120,282 galaxyEnaQ2Ay-120,436 galaxyEnaQ2Ay-120,491 galaxyEnaQ2Ay-120,529 galaxyEnaQ2Ay-120,787 galaxyEnaQ2Ay-120,792 galaxyEnaQ2Ay-120,836 galaxyEnaQ2Ay-120,870 galaxyEnaQ2Ay-120,888 galaxyEnaQ2Ay-120,899 galaxyEnaQ2Ay-120,904 galaxyEnaQ2Ay-120,926 galaxyEnaQ2Ay-120,931 galaxyEnaQ2Ay-120,992 galaxyEnaQ2Ay-120,1255 galaxyEnaQ2Ay-120,1262 galaxyEnaQ2Ay-120,1327 galaxyEnaQ2Ay-120,1336 galaxyEnaQ2Ay-122,161 galaxyEnaQ2Ay-122,231 galaxyEnaQ2Ay-122,282 galaxyEnaQ2Ay-122,436 galaxyEnaQ2Ay-122,491 galaxyEnaQ2Ay-122,529 galaxyEnaQ2Ay-122,787 galaxyEnaQ2Ay-122,792 galaxyEnaQ2Ay-122,836 galaxyEnaQ2Ay-122,870 galaxyEnaQ2Ay-122,888 galaxyEnaQ2Ay-122,899 galaxyEnaQ2Ay-122,904 galaxyEnaQ2Ay-122,926 galaxyEnaQ2Ay-122,931 galaxyEnaQ2Ay-122,992 galaxyEnaQ2Ay-122,1255 galaxyEnaQ2Ay-122,1262 galaxyEnaQ2Ay-122,1327 galaxyEnaQ2Ay-122,1336 galaxyEnaQ2Ay-4,161 galaxyEnaQ2Ay-4,231 galaxyEnaQ2Ay-4,282 galaxyEnaQ2Ay-4,436 galaxyEnaQ2Ay-4,491 galaxyEnaQ2Ay-4,529 galaxyEnaQ2Ay-4,787 galaxyEnaQ2Ay-4,792 galaxyEnaQ2Ay-4,836 galaxyEnaQ2Ay-4,870 galaxyEnaQ2Ay-4,888 galaxyEnaQ2Ay-4,899 galaxyEnaQ2Ay-4,904 galaxyEnaQ2Ay-4,926 galaxyEnaQ2Ay-4,931 galaxyEnaQ2Ay-4,992 galaxyEnaQ2Ay-4,1255 galaxyEnaQ2Ay-4,1262 galaxyEnaQ2Ay-4,1327 galaxyEnaQ2Ay-4,1336 galaxyEnaQ2Ay-5,161 galaxyEnaQ2Ay-5,231 galaxyEnaQ2Ay-5,282 galaxyEnaQ2Ay-5,436 galaxyEnaQ2Ay-5,491 galaxyEnaQ2Ay-5,529 galaxyEnaQ2Ay-5,787 galaxyEnaQ2Ay-5,792 galaxyEnaQ2Ay-5,836 galaxyEnaQ2Ay-5,870 galaxyEnaQ2Ay-5,888 galaxyEnaQ2Ay-5,899 galaxyEnaQ2Ay-5,904 galaxyEnaQ2Ay-5,926 galaxyEnaQ2Ay-5,931 galaxyEnaQ2Ay-5,992 galaxyEnaQ2Ay-5,1255 galaxyEnaQ2Ay-5,1262 galaxyEnaQ2Ay-5,1327 galaxyEnaQ2Ay-5,1336 galaxyEnaQ2Ay-6,161 galaxyEnaQ2Ay-6,231 galaxyEnaQ2Ay-6,282 galaxyEnaQ2Ay-6,436 galaxyEnaQ2Ay-6,491 galaxyEnaQ2Ay-6,529 galaxyEnaQ2Ay-6,787 galaxyEnaQ2Ay-6,792 galaxyEnaQ2Ay-6,836 galaxyEnaQ2Ay-6,870 galaxyEnaQ2Ay-6,888 galaxyEnaQ2Ay-6,899 galaxyEnaQ2Ay-6,904 galaxyEnaQ2Ay-6,926 galaxyEnaQ2Ay-6,931 galaxyEnaQ2Ay-6,992 galaxyEnaQ2Ay-6,1255 galaxyEnaQ2Ay-6,1262 galaxyEnaQ2Ay-6,1327 galaxyEnaQ2Ay-6,1336 galaxyEnaQ3Ay-4,161 galaxyEnaQ3Ay-4,231 galaxyEnaQ3Ay-4,282 galaxyEnaQ3Ay-4,436 galaxyEnaQ3Ay-4,491 galaxyEnaQ3Ay-4,529 galaxyEnaQ3Ay-4,787 galaxyEnaQ3Ay-4,792 galaxyEnaQ3Ay-4,836 galaxyEnaQ3Ay-4,870 galaxyEnaQ3Ay-4,888 galaxyEnaQ3Ay-4,899 galaxyEnaQ3Ay-4,904 galaxyEnaQ3Ay-4,926 galaxyEnaQ3Ay-4,931 galaxyEnaQ3Ay-4,992 galaxyEnaQ3Ay-4,1255 galaxyEnaQ3Ay-4,1262 galaxyEnaQ3Ay-4,1327 galaxyEnaQ3Ay-4,1336 galaxyEnaQ3Ay-5,161 galaxyEnaQ3Ay-5,231 galaxyEnaQ3Ay-5,282 galaxyEnaQ3Ay-5,436 galaxyEnaQ3Ay-5,491 galaxyEnaQ3Ay-5,529 galaxyEnaQ3Ay-5,787 galaxyEnaQ3Ay-5,792 galaxyEnaQ3Ay-5,836 galaxyEnaQ3Ay-5,870 galaxyEnaQ3Ay-5,888 galaxyEnaQ3Ay-5,899 galaxyEnaQ3Ay-5,904 galaxyEnaQ3Ay-5,926 galaxyEnaQ3Ay-5,931 galaxyEnaQ3Ay-5,992 galaxyEnaQ3Ay-5,1255 galaxyEnaQ3Ay-5,1262 galaxyEnaQ3Ay-5,1327 galaxyEnaQ3Ay-5,1336 galaxyEnaQ3Ay-9,161 galaxyEnaQ3Ay-9,231 galaxyEnaQ3Ay-9,282 galaxyEnaQ3Ay-9,436 galaxyEnaQ3Ay-9,491 galaxyEnaQ3Ay-9,529 galaxyEnaQ3Ay-9,787 galaxyEnaQ3Ay-9,792 galaxyEnaQ3Ay-9,836 galaxyEnaQ3Ay-9,870 galaxyEnaQ3Ay-9,888 galaxyEnaQ3Ay-9,899 galaxyEnaQ3Ay-9,904 galaxyEnaQ3Ay-9,926 galaxyEnaQ3Ay-9,931 galaxyEnaQ3Ay-9,992 galaxyEnaQ3Ay-9,1255 galaxyEnaQ3Ay-9,1262 galaxyEnaQ3Ay-9,1327 galaxyEnaQ3Ay-9,1336 galaxyEnaQ3B-1-1-7,161 galaxyEnaQ3B-1-1-7,231 galaxyEnaQ3B-1-1-7,282 galaxyEnaQ3B-1-1-7,436 galaxyEnaQ3B-1-1-7,491 galaxyEnaQ3B-1-1-7,529 galaxyEnaQ3B-1-1-7,787 galaxyEnaQ3B-1-1-7,792 galaxyEnaQ3B-1-1-7,836 galaxyEnaQ3B-1-1-7,870 galaxyEnaQ3B-1-1-7,888 galaxyEnaQ3B-1-1-7,899 galaxyEnaQ3B-1-1-7,904 galaxyEnaQ3B-1-1-7,926 galaxyEnaQ3B-1-1-7,931 galaxyEnaQ3B-1-1-7,992 galaxyEnaQ3B-1-1-7,1255 galaxyEnaQ3B-1-1-7,1262 galaxyEnaQ3B-1-1-7,1327 galaxyEnaQ3B-1-1-7,1336 galaxyEnaQ3B-1-617-2,161 galaxyEnaQ3B-1-617-2,231 galaxyEnaQ3B-1-617-2,282 galaxyEnaQ3B-1-617-2,436 galaxyEnaQ3B-1-617-2,491 galaxyEnaQ3B-1-617-2,529 galaxyEnaQ3B-1-617-2,787 galaxyEnaQ3B-1-617-2,792 galaxyEnaQ3B-1-617-2,836 galaxyEnaQ3B-1-617-2,870 galaxyEnaQ3B-1-617-2,888 galaxyEnaQ3B-1-617-2,899 galaxyEnaQ3B-1-617-2,904 galaxyEnaQ3B-1-617-2,926 galaxyEnaQ3B-1-617-2,931 galaxyEnaQ3B-1-617-2,992 galaxyEnaQ3B-1-617-2,1255 galaxyEnaQ3B-1-617-2,1262 galaxyEnaQ3B-1-617-2,1327 galaxyEnaQ3B-1-617-2,1336 gap,99 gap,103 gc5BaseBw,44 genscan,102 genscan,132 gold,117 gold,123 gordon2,25 gordon2,115 gordon2,121 gordon2,154 gordon2,162 gordon2,209 gordon2,249 gordon2,257 iedb,76 iedb,112 kimIvtCov,105 kimRnaMod,75 kimRnaMod,143 kimRnaMod,190 kimTranscripts,191 kimTranscripts,360 kimTranscripts,407 mccoy,83 mccoy,118 mccoy,158 mccoy,204 mccoy,239 mccoy,297 mccoy,363 mccoy,367 mccoy,407 mccoy,518 mccoy,522 mccoy,553 mccoy,557 mccoy,561 mccoy,774 mccoy,830 mccoy,880 mccoy,894 multiz7way,101 multiz7way,117 multiz7way,179 multiz7way,182 multiz7way,187 multiz7way,201 multiz7way,204 multiz7way,223 multiz7way,227 multiz7way,305 multiz7way,310 multiz7way,393 multiz7way,397 multiz7way,606 multiz7way,610 multiz7way,645 multiz7way,662 multiz7way,934 multiz7way,986 multiz7way,1016 multiz7way,1037 multiz7way,1080 multiz7way,1104 multiz7way,1131 multiz7way,1155 multiz7way,1250 ncbiGeneBGP,65 ncbiGeneBGP,98 ncbiGeneBGP,128 ncbiProducts,81 ncbiProducts,114 ncbiProducts,144 nextstrainClade,30 nextstrainClade,69 nextstrainClade,115 nextstrainClade,166 nextstrainFreq,30 nextstrainFreq,76 nextstrainFreq,93 nextstrainFreq,107 nextstrainFreq,158 nextstrainGene,28 nextstrainGene,52 nextstrainGene,116 nextstrainParsimony,47 nextstrainParsimony,93 nextstrainParsimony,96 nextstrainParsimony,136 nextstrainParsimony,143 nextstrainParsimony,173 nextstrainParsimony,209 nextstrainParsimony,259 nextstrainParsimony,315 nextstrainParsimony,398 nextstrainSamples,43 nextstrainSamples,67 nextstrainSamples,180 nextstrainSamples,198 nextstrainSamples,308 nextstrainSamples,319 nextstrainSamples,329 nextstrainSamples,355 nextstrainSamples,391 nextstrainSamples,526 nextstrainSamples,616 nextstrainSamples,671 nextstrainSamples,727 nextstrainSamples,753 nextstrainSamples,761 nextstrainSamples,820 nextstrainSamples,832 nextstrainSamples,1059 nextstrainSamples,1063 pbm,29 pbm,231 pbm,322 pbm,369 pbmShanghai,32 pbmShanghai,82 pbmShanghai,258 pbmShanghai,307 pbmShanghai,324 pbmShanghai,378 pbmShanghai,439 pdb,74 pdb,79 pdb,116 phyloGenes,55 phyloGenes,64 phyloGenes,99 phyloGenes,106 phyloGenes,125 phyloGenes,132 phyloGenes,196 phyloGenes,208 phyloGenes,221 phyloGenes,231 phyloGenes,244 phyloGenes,253 phyloGenes,259 phyloGenes,302 phyloGenes,309 phyloGenes,357 phyloGenes,404 phyloGenes,502 phyloGenes,577 pond,108 pond,122 pond,155 poranHla1,58 poranHla1,91 poranHla1,106 poranHla1,112 poranHla1,129 poranHla1,170 poranHla1,217 poranHla2,58 poranHla2,91 poranHla2,106 poranHla2,112 poranHla2,129 poranHla2,170 poranHla2,217 potPathoIndel,122 potPathoIndel,130 potPathoIndel,136 primers,33 primers,106 problematicSites,200 problematicSites,238 problematicSites,282 problematicSites,342 problematicSites,352 problematicSites,394 problematicSites,438 publicAnnots,20 pyle,79 pyle,97 pyle,116 pyle,153 pyle,174 rapid,115 rapid,165 rapid,250 rapid,297 rappuoli,18 rappuoli,90 rappuoli,125 rappuoli,165 rappuoli,211 rappuoli,246 rappuoli,304 rappuoli,370 rappuoli,374 rappuoli,414 rappuoli,525 rappuoli,529 rappuoli,560 rappuoli,564 rappuoli,568 rappuoli,781 rappuoli,837 rappuoli,887 rappuoli,901 recomb,25 recomb,86 recomb,114 recomb,182 recomb,202 recomb,257 recomb,327 resist,109 resistPred,75 resistPred,201 rosettaMhc,13 rosettaMhc,53 rosettaMhc,145 rosettaMhc,204 rosettaMhc,277 rosettaMhc,324 rosettaMhc,344 sarsCov2Phylo,23 sarsCov2Phylo,104 sarsCov2Phylo,109 sarsCov2Phylo,154 sarsCov2Phylo,158 sarsCov2Phylo,179 sarsCov2Phylo,198 sarsCov2Phylo,213 sarsCov2Phylo,226 sarsCov2Phylo,240 sarsCov2Phylo,313 sarsCov2Phylo,324 sarsCov2Phylo,334 sarsCov2Phylo,359 sarsCov2Phylo,395 sarsCov2Phylo,426 sarsCov2Phylo,433 sarsCov2Phylo,449 sarsCov2Phylo,789 sarsCov2Phylo,935 sarsCov2Phylo,952 sarsCov2Phylo,985 sarsCov2PhyloPub,21 sarsCov2PhyloPub,117 sarsCov2PhyloPub,122 sarsCov2PhyloPub,160 sarsCov2PhyloPub,164 sarsCov2PhyloPub,186 sarsCov2PhyloPub,205 sarsCov2PhyloPub,220 sarsCov2PhyloPub,233 sarsCov2PhyloPub,247 sarsCov2PhyloPub,320 sarsCov2PhyloPub,331 sarsCov2PhyloPub,345 sarsCov2PhyloPub,388 sarsCov2PhyloPub,424 sarsCov2PhyloPub,455 sarsCov2PhyloPub,462 sarsCov2PhyloPub,478 sarsCov2PhyloPub,710 sarsCov2PhyloPub,832 sarsCov2PhyloPub,842 sarsCov2PhyloPub,1041 sarsCov2PhyloPub,1055 sarsCov2PhyloPub,1072 sarsCov2PhyloPub,1105 simpleRepeat,79 spikeMuts,27 spikeMuts,62 strainCons119way,93 strainCons119way,173 strainCons119way,187 strainCons119way,224 strainCons119way,230 strainCons119way,365 strainCons119way,427 strainCons119way,450 strainCons119way,466 strainCons119way,528 strainCons119way,531 strainCons119way,536 strainCons119way,550 strainCons119way,553 strainCons119way,572 strainCons119way,576 strainCons119way,648 strainCons119way,735 strainCons119way,739 strainCons119way,767 strainCons119way,956 strainCons119way,960 strainCons119way,994 strainCons119way,1011 strainCons119way,1681 strainCons119way,1703 strainCons119way,1794 strainCons119way,1796 strainCons119way,1813 strainCons119way,1839 strainCons119way,1843 strainCons119way,1849 strainCons119way,1891 strainCons119way,1901 strainCons119way,1936 strainCons119way,2025 strainCons119way,2043 strainCons119way,2104 strainCons119way,2146 strainCons119way,2152 strainCons119way,2312 strainCons119way,2364 strainCons119way,2394 strainCons119way,2415 strainCons119way,2458 strainCons119way,2482 strainCons119way,2509 strainCons119way,2533 strainCons119way,2628 strainCons44way,121 strainCons44way,135 strainCons44way,172 strainCons44way,178 strainCons44way,313 strainCons44way,375 strainCons44way,398 strainCons44way,414 strainCons44way,476 strainCons44way,479 strainCons44way,484 strainCons44way,498 strainCons44way,501 strainCons44way,520 strainCons44way,524 strainCons44way,596 strainCons44way,683 strainCons44way,687 strainCons44way,715 strainCons44way,904 strainCons44way,908 strainCons44way,942 strainCons44way,959 strainCons44way,1276 strainCons44way,1298 strainCons44way,1389 strainCons44way,1391 strainCons44way,1408 strainCons44way,1434 strainCons44way,1438 strainCons44way,1444 strainCons44way,1486 strainCons44way,1496 strainCons44way,1531 strainCons44way,1620 strainCons44way,1638 strainCons44way,1699 strainCons44way,1741 strainCons44way,1747 strainCons44way,1907 strainCons44way,1959 strainCons44way,1989 strainCons44way,2010 strainCons44way,2053 strainCons44way,2077 strainCons44way,2104 strainCons44way,2128 strainCons44way,2223 swift,54 swift,102 swift,179 swift,226 targets,198 transcriptome,160 transcriptome,223 transcriptome,366 transcriptome,413 treangen,35 treangen,54 treangen,62 treangen,109 treangen,186 treangen,237 treangen,240 treangen,248 treangen,283 unipCov2AliSwissprot,85 unipCov2AliSwissprot,106 unipCov2AliSwissprot,116 unipCov2AliSwissprot,127 unipCov2AliSwissprot,232 unipCov2AliSwissprot,286 unipCov2AliSwissprot,330 unipCov2AliSwissprot,358 unipCov2AliSwissprot,473 unipCov2AliSwissprot,479 unipCov2AliSwissprot,488 unipCov2Chain,270 unipCov2Chain,291 unipCov2Chain,301 unipCov2Chain,333 unipCov2Chain,516 unipCov2Chain,560 unipCov2Chain,588 unipCov2Chain,702 unipCov2Chain,708 unipCov2Chain,717 unipCov2DisulfBond,266 unipCov2DisulfBond,287 unipCov2DisulfBond,297 unipCov2DisulfBond,329 unipCov2DisulfBond,512 unipCov2DisulfBond,556 unipCov2DisulfBond,584 unipCov2DisulfBond,698 unipCov2DisulfBond,704 unipCov2DisulfBond,713 unipCov2Domain,265 unipCov2Domain,286 unipCov2Domain,296 unipCov2Domain,328 unipCov2Domain,511 unipCov2Domain,555 unipCov2Domain,583 unipCov2Domain,697 unipCov2Domain,703 unipCov2Domain,712 unipCov2Interest,57 unipCov2Interest,60 unipCov2Interest,70 unipCov2Interest,192 unipCov2Interest,236 unipCov2Interest,264 unipCov2Interest,356 unipCov2Interest,362 unipCov2Interest,371 unipCov2LocCytopl,265 unipCov2LocCytopl,286 unipCov2LocCytopl,296 unipCov2LocCytopl,328 unipCov2LocCytopl,511 unipCov2LocCytopl,555 unipCov2LocCytopl,583 unipCov2LocCytopl,697 unipCov2LocCytopl,703 unipCov2LocCytopl,712 unipCov2LocExtra,265 unipCov2LocExtra,286 unipCov2LocExtra,296 unipCov2LocExtra,328 unipCov2LocExtra,511 unipCov2LocExtra,555 unipCov2LocExtra,583 unipCov2LocExtra,697 unipCov2LocExtra,703 unipCov2LocExtra,712 unipCov2LocSignal,266 unipCov2LocSignal,287 unipCov2LocSignal,297 unipCov2LocSignal,329 unipCov2LocSignal,512 unipCov2LocSignal,556 unipCov2LocSignal,584 unipCov2LocSignal,698 unipCov2LocSignal,704 unipCov2LocSignal,713 unipCov2LocTransMemb,266 unipCov2LocTransMemb,287 unipCov2LocTransMemb,297 unipCov2LocTransMemb,329 unipCov2LocTransMemb,512 unipCov2LocTransMemb,556 unipCov2LocTransMemb,584 unipCov2LocTransMemb,698 unipCov2LocTransMemb,704 unipCov2LocTransMemb,713 unipCov2Modif,269 unipCov2Modif,290 unipCov2Modif,300 unipCov2Modif,332 unipCov2Modif,515 unipCov2Modif,559 unipCov2Modif,587 unipCov2Modif,701 unipCov2Modif,707 unipCov2Modif,716 unipCov2Mut,266 unipCov2Mut,287 unipCov2Mut,297 unipCov2Mut,329 unipCov2Mut,512 unipCov2Mut,556 unipCov2Mut,584 unipCov2Mut,698 unipCov2Mut,704 unipCov2Mut,713 unipCov2Other,266 unipCov2Other,287 unipCov2Other,297 unipCov2Other,329 unipCov2Other,512 unipCov2Other,556 unipCov2Other,584 unipCov2Other,698 unipCov2Other,704 unipCov2Other,713 unipCov2Repeat,264 unipCov2Repeat,285 unipCov2Repeat,295 unipCov2Repeat,327 unipCov2Repeat,510 unipCov2Repeat,554 unipCov2Repeat,582 unipCov2Repeat,696 unipCov2Repeat,702 unipCov2Repeat,711 unipCov2Struct,268 unipCov2Struct,289 unipCov2Struct,299 unipCov2Struct,331 unipCov2Struct,514 unipCov2Struct,558 unipCov2Struct,586 unipCov2Struct,700 unipCov2Struct,706 unipCov2Struct,715 vaccines,94 vaccines,108 vaccines,420 variantMuts,125 variantMuts,141 variantMuts,190 variantMuts,207 variantMuts,578 variantMuts,580 variantMuts,593 variantMuts,595 variantMuts,878 variantMuts,924 variantMuts,1242 variantMuts,1259 variantMuts,1280 variantMuts,1290 variantMuts,1314 variantMuts,1376 variantMuts,1402 variantMuts,1421 variantMuts,1435 varskip,102 varskip,149 weizmanOrfs,39 weizmanOrfs,77 weizmanOrfs,97 weizmanOrfs,188 weizmanOrfs,357 windowmaskerSdust,91 a-k abEscape,91 bloomEscMabAvg,95 bloomEscMax,23 bloomEscMax,101 bloomEscSerumAvg,18 bloomEscSerumAvg,96 bloomEscTop,99 bloomEscTotal,23 escape,98 mccoy,91 rappuoli,98 a222v spikeMuts,126 a626s spikeMuts,138 a701b spikeMuts,141 a_120 A_120Max,10 a_21 A_21Max,10 a_45 A_45Max,10 a_bind_avg A_bind_avg,1 a_expr_avg A_expr_avg_Expression,1 aa vaccines,446 variantAaMutsV2_B_1_1_7,2 variantAaMutsV2_B_1_351,2 variantAaMutsV2_B_1_429,2 variantAaMutsV2_B_1_525,2 variantAaMutsV2_B_1_526,2 variantAaMutsV2_B_1_617_1,2 variantAaMutsV2_B_1_617_2,2 variantAaMutsV2_B_1_621,2 variantAaMutsV2_C_37,2 variantAaMutsV2_P_1,2 variantAaMuts_BA_2,3 variantAaMuts_BA_2_12_1,3 variantAaMuts_BA_2_75,3 variantAaMuts_BA_2_86,3 variantAaMuts_BA_4,3 variantAaMuts_BA_5,3 variantAaMuts_BQ_1,3 variantAaMuts_B_1_1_529,3 variantAaMuts_CH_1_1,3 variantAaMuts_EG_5_1,3 variantAaMuts_HK_3,3 variantAaMuts_JN_1,3 variantAaMuts_XBB,3 variantAaMuts_XBB_1_16,3 variantAaMuts_XBB_1_5,3 variantAaMuts_XBB_1_5_70,3 variantAaMuts_XBB_1_9,3 variantAaMuts_XBB_2_3,3 windowmaskerSdust,97 aagaac transcriptome,257 ab augustusGene,3 augustusGene,16 escape,3 sarsCov2Phylo,981 sarsCov2PhyloPub,1101 abbott cas13Crispr,27 cas13Crispr,490 abdel variantMuts,1476 able cas13Crispr,95 microdel,65 about PhyloCSF_smooth,674 PhyloCSFpower,636 Q0_tracks,266 Q1_tracks,268 Q2_tracks,268 Q3_tracks,268 epitopes,202 galaxyEna,268 galaxyEnaQ0Ba-1,264 galaxyEnaQ0Ba-1-1,264 galaxyEnaQ0Ba-1-1-11,264 galaxyEnaQ0Ba-1-17,264 galaxyEnaQ0Ba-2,264 galaxyEnaQ1Ay-4,264 galaxyEnaQ1Ay-4-2,264 galaxyEnaQ1Ay-4-2-2,264 galaxyEnaQ1Ay-43,264 galaxyEnaQ1Ba-1-17,264 galaxyEnaQ2Ay-120,264 galaxyEnaQ2Ay-122,264 galaxyEnaQ2Ay-4,264 galaxyEnaQ2Ay-5,264 galaxyEnaQ2Ay-6,264 galaxyEnaQ3Ay-4,264 galaxyEnaQ3Ay-5,264 galaxyEnaQ3Ay-9,264 galaxyEnaQ3B-1-1-7,264 galaxyEnaQ3B-1-617-2,264 gap,35 genscan,127 gold,37 iedb,88 multiz7way,301 nextstrainClade,18 nextstrainClade,79 nextstrainFreq,15 nextstrainGene,16 nextstrainParsimony,18 nextstrainSamples,18 nextstrainSamples,127 nextstrainSamples,192 problematicSites,75 rfam,177 sarsCov2Phylo,522 sarsCov2PhyloPub,547 simpleRepeat,59 strainCons119way,644 strainCons119way,1958 strainCons44way,592 strainCons44way,1553 above Q0_tracks,788 Q1_tracks,790 Q2_tracks,790 Q3_tracks,790 galaxyEna,790 galaxyEnaQ0Ba-1,786 galaxyEnaQ0Ba-1-1,786 galaxyEnaQ0Ba-1-1-11,786 galaxyEnaQ0Ba-1-17,786 galaxyEnaQ0Ba-2,786 galaxyEnaQ1Ay-4,786 galaxyEnaQ1Ay-4-2,786 galaxyEnaQ1Ay-4-2-2,786 galaxyEnaQ1Ay-43,786 galaxyEnaQ1Ba-1-17,786 galaxyEnaQ2Ay-120,786 galaxyEnaQ2Ay-122,786 galaxyEnaQ2Ay-4,786 galaxyEnaQ2Ay-5,786 galaxyEnaQ2Ay-6,786 galaxyEnaQ3Ay-4,786 galaxyEnaQ3Ay-5,786 galaxyEnaQ3Ay-9,786 galaxyEnaQ3B-1-1-7,786 galaxyEnaQ3B-1-617-2,786 kimNp,86 primers,122 primers,279 transcriptome,179 vaccines,249 absolute strainCons119way,356 strainCons44way,304 abstract epitopes,168 ac Starr_Bloom,257 Starr_Bloom_bind,251 acad multiz7way,1151 strainCons119way,2529 strainCons44way,2124 academics addgene,88 academy potPathoIndel,234 acc ucscToRefSeq,2 acceleration strainCons119way,308 strainCons119way,1994 strainCons119way,2059 strainCons44way,256 strainCons44way,1589 strainCons44way,1654 acceptor genscan,32 acceptor-that recomb,217 access Calu3_07hpi,306 Calu3_07hpi,340 IgG_Z-score-_COVID-19_patients,282 IgG_Z-score-_COVID-19_patients,396 IgM_Z-score-_COVID-19_patients,282 IgM_Z-score-_COVID-19_patients,396 ORFs,304 ORFs,338 PhyloCSF_smooth,624 PhyloCSF_smooth,665 Starr_Bloom,198 Starr_Bloom,232 Starr_Bloom_bind,192 Starr_Bloom_bind,226 Vero6_05hpi,306 Vero6_05hpi,340 Vero6_24hpi,306 Vero6_24hpi,340 abEscape,650 abEscape,684 artic,65 artic,178 articV4,65 articV4,178 articV4_1,76 articV4_1,191 bloomEscMabAvg,654 bloomEscMabAvg,688 bloomEscMax,660 bloomEscMax,694 bloomEscSerumAvg,655 bloomEscSerumAvg,689 bloomEscTop,658 bloomEscTop,692 bpmIggCovidSum,291 bpmIggCovidSum,405 bpmIgmCovidSum,291 bpmIgmCovidSum,405 cas13Crispr,350 cas13Crispr,463 contacts,278 contacts,391 cpgIslandExt,505 cpgIslandExtUnmasked,508 cpgIslandSuper,505 escape,657 escape,691 icshape,81 icshape,175 kimRnaMod,112 kimRnaMod,225 kimTranscripts,329 kimTranscripts,443 mccoy,650 mccoy,684 microdel,138 microdel,182 multiz7way,797 ncbiGeneBGP,40 ncbiGeneBGP,158 ncbiProducts,56 ncbiProducts,174 nextstrainClade,178 nextstrainFreq,170 nextstrainFreq,263 nextstrainGene,128 nextstrainParsimony,340 nextstrainSamples,662 pbm,291 pbm,405 pbmShanghai,408 pbmShanghai,488 phyloGenes,326 phyloGenes,440 poranHla1,139 poranHla1,253 poranHla2,139 poranHla2,253 primers,315 problematicSites,483 rapid,219 rapid,332 rappuoli,657 rappuoli,691 recomb,272 resist,85 resist,135 resistPred,163 resistPred,227 sarsCov2Phylo,702 sarsCov2PhyloPub,742 sarsCov2PhyloPub,809 spikeMuts,294 spikeMuts,350 swift,148 swift,261 transcriptome,335 transcriptome,449 unipCov2AliSwissprot,261 unipCov2AliSwissprot,395 unipCov2Chain,491 unipCov2Chain,625 unipCov2DisulfBond,487 unipCov2DisulfBond,621 unipCov2Domain,486 unipCov2Domain,620 unipCov2Interest,167 unipCov2LocCytopl,486 unipCov2LocCytopl,620 unipCov2LocExtra,486 unipCov2LocExtra,620 unipCov2LocSignal,487 unipCov2LocSignal,621 unipCov2LocTransMemb,487 unipCov2LocTransMemb,621 unipCov2Modif,490 unipCov2Modif,624 unipCov2Mut,487 unipCov2Mut,621 unipCov2Other,487 unipCov2Other,621 unipCov2Repeat,485 unipCov2Repeat,619 unipCov2Struct,489 unipCov2Struct,623 vaccines,355 vaccines,406 variantMuts,973 varskip,71 varskip,184 weizmanOrfs,312 weizmanOrfs,346 accessed icshape,115 microdel,74 nextstrainClade,212 nextstrainFreq,204 nextstrainGene,161 nextstrainParsimony,373 primers,349 problematicSites,531 recomb,306 sarsCov2PhyloPub,883 vaccines,394 variantMuts,1007 accessible Q0_tracks,1009 Q1_tracks,1011 Q2_tracks,1011 Q3_tracks,1011 galaxyEna,1011 galaxyEnaQ0Ba-1,1007 galaxyEnaQ0Ba-1-1,1007 galaxyEnaQ0Ba-1-1-11,1007 galaxyEnaQ0Ba-1-17,1007 galaxyEnaQ0Ba-2,1007 galaxyEnaQ1Ay-4,1007 galaxyEnaQ1Ay-4-2,1007 galaxyEnaQ1Ay-4-2-2,1007 galaxyEnaQ1Ay-43,1007 galaxyEnaQ1Ba-1-17,1007 galaxyEnaQ2Ay-120,1007 galaxyEnaQ2Ay-122,1007 galaxyEnaQ2Ay-4,1007 galaxyEnaQ2Ay-5,1007 galaxyEnaQ2Ay-6,1007 galaxyEnaQ3Ay-4,1007 galaxyEnaQ3Ay-5,1007 galaxyEnaQ3Ay-9,1007 galaxyEnaQ3B-1-1-7,1007 galaxyEnaQ3B-1-617-2,1007 pyle,91 accession multiz7way,83 multiz7way,696 pdb,72 strainCons119way,412 strainCons119way,418 strainCons119way,1045 strainCons44way,360 strainCons44way,366 strainCons44way,993 ucscToINSDC,2 ucscToINSDC,23 ucscToRefSeq,4 ucscToRefSeq,18 accommodating recomb,139 accomplished icshape,139 nextstrainFreq,228 according PhyloCSF_smooth,610 PhyloCSFpower,621 augustusGene,114 cpgIslandExt,370 cpgIslandExtUnmasked,373 cpgIslandSuper,370 nextstrainFreq,119 nextstrainSamples,178 phyloGenes,48 account PhyloCSF_smooth,579 PhyloCSFpower,594 accounts Q0_tracks,986 Q1_tracks,988 Q2_tracks,988 Q3_tracks,988 galaxyEna,988 galaxyEnaQ0Ba-1,984 galaxyEnaQ0Ba-1-1,984 galaxyEnaQ0Ba-1-1-11,984 galaxyEnaQ0Ba-1-17,984 galaxyEnaQ0Ba-2,984 galaxyEnaQ1Ay-4,984 galaxyEnaQ1Ay-4-2,984 galaxyEnaQ1Ay-4-2-2,984 galaxyEnaQ1Ay-43,984 galaxyEnaQ1Ba-1-17,984 galaxyEnaQ2Ay-120,984 galaxyEnaQ2Ay-122,984 galaxyEnaQ2Ay-4,984 galaxyEnaQ2Ay-5,984 galaxyEnaQ2Ay-6,984 galaxyEnaQ3Ay-4,984 galaxyEnaQ3Ay-5,984 galaxyEnaQ3Ay-9,984 galaxyEnaQ3B-1-1-7,984 galaxyEnaQ3B-1-617-2,984 accov-jc34 strainCons119way,1413 accumulating pond,114 accurate recomb,164 sarsCov2Phylo,1153 sarsCov2PhyloPub,1286 ace2 Starr_Bloom,31 Starr_Bloom,67 Starr_Bloom,273 Starr_Bloom_bind,9 Starr_Bloom_bind,64 Starr_Bloom_bind,98 Starr_Bloom_bind,267 acgaac transcriptome,131 transcriptome,248 achdout Calu3_07hpi,360 ORFs,358 Vero6_05hpi,360 Vero6_24hpi,360 weizmanOrfs,366 achieves kimTranscripts,49 transcriptome,41 acid IgG_Z-score-_COVID-19_patients,437 IgM_Z-score-_COVID-19_patients,437 PhyloCSF_smooth,49 PhyloCSF_smooth,74 PhyloCSF_smooth,88 PhyloCSFpower,64 PhyloCSFpower,89 PhyloCSFpower,103 Q0_tracks,484 Q0_tracks,505 Q1_tracks,486 Q1_tracks,507 Q2_tracks,486 Q2_tracks,507 Q3_tracks,486 Q3_tracks,507 Starr_Bloom,61 Starr_Bloom,88 Starr_Bloom,113 Starr_Bloom,122 Starr_Bloom_bind,58 Starr_Bloom_bind,82 Starr_Bloom_bind,107 Starr_Bloom_bind,116 abEscape,393 abEscape,445 abEscape,460 abEscape,494 abEscape,549 bloomEscMabAvg,397 bloomEscMabAvg,449 bloomEscMabAvg,464 bloomEscMabAvg,498 bloomEscMabAvg,553 bloomEscMax,15 bloomEscMax,403 bloomEscMax,455 bloomEscMax,470 bloomEscMax,504 bloomEscMax,559 bloomEscSerumAvg,398 bloomEscSerumAvg,450 bloomEscSerumAvg,465 bloomEscSerumAvg,499 bloomEscSerumAvg,554 bloomEscTop,401 bloomEscTop,453 bloomEscTop,468 bloomEscTop,502 bloomEscTop,557 bloomEscTotal,15 bpmIggCovidSum,446 bpmIgmCovidSum,446 contacts,233 escape,400 escape,452 escape,467 escape,501 escape,556 galaxyEna,486 galaxyEna,507 galaxyEnaQ0Ba-1,5 galaxyEnaQ0Ba-1,482 galaxyEnaQ0Ba-1,503 galaxyEnaQ0Ba-1-1,5 galaxyEnaQ0Ba-1-1,482 galaxyEnaQ0Ba-1-1,503 galaxyEnaQ0Ba-1-1-11,5 galaxyEnaQ0Ba-1-1-11,482 galaxyEnaQ0Ba-1-1-11,503 galaxyEnaQ0Ba-1-17,5 galaxyEnaQ0Ba-1-17,482 galaxyEnaQ0Ba-1-17,503 galaxyEnaQ0Ba-2,5 galaxyEnaQ0Ba-2,482 galaxyEnaQ0Ba-2,503 galaxyEnaQ1Ay-4,5 galaxyEnaQ1Ay-4,482 galaxyEnaQ1Ay-4,503 galaxyEnaQ1Ay-4-2,5 galaxyEnaQ1Ay-4-2,482 galaxyEnaQ1Ay-4-2,503 galaxyEnaQ1Ay-4-2-2,5 galaxyEnaQ1Ay-4-2-2,482 galaxyEnaQ1Ay-4-2-2,503 galaxyEnaQ1Ay-43,5 galaxyEnaQ1Ay-43,482 galaxyEnaQ1Ay-43,503 galaxyEnaQ1Ba-1-17,5 galaxyEnaQ1Ba-1-17,482 galaxyEnaQ1Ba-1-17,503 galaxyEnaQ2Ay-120,5 galaxyEnaQ2Ay-120,482 galaxyEnaQ2Ay-120,503 galaxyEnaQ2Ay-122,5 galaxyEnaQ2Ay-122,482 galaxyEnaQ2Ay-122,503 galaxyEnaQ2Ay-4,5 galaxyEnaQ2Ay-4,482 galaxyEnaQ2Ay-4,503 galaxyEnaQ2Ay-5,5 galaxyEnaQ2Ay-5,482 galaxyEnaQ2Ay-5,503 galaxyEnaQ2Ay-6,5 galaxyEnaQ2Ay-6,482 galaxyEnaQ2Ay-6,503 galaxyEnaQ3Ay-4,5 galaxyEnaQ3Ay-4,482 galaxyEnaQ3Ay-4,503 galaxyEnaQ3Ay-5,5 galaxyEnaQ3Ay-5,482 galaxyEnaQ3Ay-5,503 galaxyEnaQ3Ay-9,5 galaxyEnaQ3Ay-9,482 galaxyEnaQ3Ay-9,503 galaxyEnaQ3B-1-1-7,5 galaxyEnaQ3B-1-1-7,482 galaxyEnaQ3B-1-1-7,503 galaxyEnaQ3B-1-617-2,5 galaxyEnaQ3B-1-617-2,482 galaxyEnaQ3B-1-617-2,503 mccoy,393 mccoy,445 mccoy,460 mccoy,494 mccoy,549 multiz7way,192 multiz7way,214 multiz7way,321 multiz7way,336 pbm,446 rappuoli,400 rappuoli,452 rappuoli,467 rappuoli,501 rappuoli,556 resist,20 resistPred,28 spikeMuts,94 strainCons119way,541 strainCons119way,563 strainCons44way,489 strainCons44way,511 treangen,127 treangen,274 unipCov2Chain,198 unipCov2Chain,210 unipCov2DisulfBond,194 unipCov2DisulfBond,206 unipCov2Domain,193 unipCov2Domain,205 unipCov2LocCytopl,193 unipCov2LocCytopl,205 unipCov2LocExtra,193 unipCov2LocExtra,205 unipCov2LocSignal,194 unipCov2LocSignal,206 unipCov2LocTransMemb,194 unipCov2LocTransMemb,206 unipCov2Modif,5 unipCov2Modif,197 unipCov2Modif,209 unipCov2Mut,4 unipCov2Mut,194 unipCov2Mut,206 unipCov2Other,194 unipCov2Other,206 unipCov2Repeat,192 unipCov2Repeat,204 unipCov2Struct,196 unipCov2Struct,208 variantAaMutsV2_B_1_1_7,10 variantAaMutsV2_B_1_351,10 variantAaMutsV2_B_1_429,10 variantAaMutsV2_B_1_525,9 variantAaMutsV2_B_1_526,10 variantAaMutsV2_B_1_617_1,10 variantAaMutsV2_B_1_617_2,10 variantAaMutsV2_B_1_621,10 variantAaMutsV2_C_37,10 variantAaMutsV2_P_1,10 variantAaMuts_BA_2,8 variantAaMuts_BA_2_12_1,8 variantAaMuts_BA_2_75,8 variantAaMuts_BA_2_86,8 variantAaMuts_BA_4,8 variantAaMuts_BA_5,8 variantAaMuts_BQ_1,8 variantAaMuts_B_1_1_529,10 variantAaMuts_CH_1_1,8 variantAaMuts_EG_5_1,8 variantAaMuts_HK_3,8 variantAaMuts_JN_1,8 variantAaMuts_XBB,8 variantAaMuts_XBB_1_16,8 variantAaMuts_XBB_1_5,8 variantAaMuts_XBB_1_5_70,8 variantAaMuts_XBB_1_9,8 variantAaMuts_XBB_2_3,8 variantMuts,29 variantMuts,720 variantMuts,729 variantMuts,736 acids contacts,111 contacts,127 contacts,150 contacts,255 iedb,121 pdb,154 resistPred,104 simpleRepeat,86 unipCov2AliSwissprot,454 unipCov2Chain,683 unipCov2DisulfBond,679 unipCov2Domain,678 unipCov2Interest,337 unipCov2LocCytopl,678 unipCov2LocExtra,678 unipCov2LocSignal,679 unipCov2LocTransMemb,679 unipCov2Modif,682 unipCov2Mut,679 unipCov2Other,679 unipCov2Repeat,677 unipCov2Struct,681 acknowledge nextstrainParsimony,427 nextstrainSamples,904 sarsCov2Phylo,840 sarsCov2PhyloPub,923 variantMuts,1186 acknowledged nextstrainSamples,698 acknowledgement microdel,204 acknowledgements sarsCov2Phylo,932 acknowledgements.tsv.gz sarsCov2PhyloPub,866 sarsCov2PhyloPub,1037 acknowledgments.pdf microdel,216 acronym unipCov2AliSwissprot,149 unipCov2Chain,355 unipCov2DisulfBond,351 unipCov2Domain,350 unipCov2LocCytopl,350 unipCov2LocExtra,350 unipCov2LocSignal,351 unipCov2LocTransMemb,351 unipCov2Modif,354 unipCov2Mut,351 unipCov2Other,351 unipCov2Repeat,349 unipCov2Struct,353 across Calu3_07hpi,188 IgG_Z-score-_COVID-19_patients,196 IgM_Z-score-_COVID-19_patients,196 ORFs,186 Q0_tracks,497 Q1_tracks,499 Q2_tracks,499 Q3_tracks,499 Vero6_05hpi,188 Vero6_24hpi,188 abEscape,346 bloomEscMabAvg,13 bloomEscMabAvg,350 bloomEscMax,356 bloomEscSerumAvg,14 bloomEscSerumAvg,351 bloomEscTop,354 bpmIggCovidSum,205 bpmIgmCovidSum,205 escape,353 galaxyEna,499 galaxyEnaQ0Ba-1,495 galaxyEnaQ0Ba-1-1,495 galaxyEnaQ0Ba-1-1-11,495 galaxyEnaQ0Ba-1-17,495 galaxyEnaQ0Ba-2,495 galaxyEnaQ1Ay-4,495 galaxyEnaQ1Ay-4-2,495 galaxyEnaQ1Ay-4-2-2,495 galaxyEnaQ1Ay-43,495 galaxyEnaQ1Ba-1-17,495 galaxyEnaQ2Ay-120,495 galaxyEnaQ2Ay-122,495 galaxyEnaQ2Ay-4,495 galaxyEnaQ2Ay-5,495 galaxyEnaQ2Ay-6,495 galaxyEnaQ3Ay-4,495 galaxyEnaQ3Ay-5,495 galaxyEnaQ3Ay-9,495 galaxyEnaQ3B-1-1-7,495 galaxyEnaQ3B-1-617-2,495 mccoy,346 nextstrainSamples,386 pbm,205 potPathoIndel,195 rappuoli,353 recomb,120 sarsCov2Phylo,390 sarsCov2PhyloPub,419 weizmanOrfs,194 acs IgG_Z-score-_COVID-19_patients,439 IgM_Z-score-_COVID-19_patients,439 bpmIggCovidSum,448 bpmIgmCovidSum,448 pbm,15 pbm,448 acscentsci.0c00742 IgG_Z-score-_COVID-19_patients,445 IgM_Z-score-_COVID-19_patients,445 bpmIggCovidSum,454 bpmIgmCovidSum,454 pbm,454 action problematicSites,471 actively Calu3_07hpi,185 ORFs,183 Vero6_05hpi,185 Vero6_24hpi,185 weizmanOrfs,191 actual phyloGenes,182 targets,155 transcriptome,186 vaccines,76 acute swift,71 variantMuts,1379 acylation pyle,45 adam multiz7way,858 strainCons119way,2236 strainCons44way,1831 adapted sarsCov2Phylo,144 sarsCov2PhyloPub,150 adapter problematicSites,328 adaptive rosettaMhc,46 add publicAnnots,31 publicAnnots,58 added Q0_tracks,1027 Q1_tracks,1029 Q2_tracks,1029 Q3_tracks,1029 addgene,227 galaxyEna,1029 galaxyEnaQ0Ba-1,1025 galaxyEnaQ0Ba-1-1,1025 galaxyEnaQ0Ba-1-1-11,1025 galaxyEnaQ0Ba-1-17,1025 galaxyEnaQ0Ba-2,1025 galaxyEnaQ1Ay-4,1025 galaxyEnaQ1Ay-4-2,1025 galaxyEnaQ1Ay-4-2-2,1025 galaxyEnaQ1Ay-43,1025 galaxyEnaQ1Ba-1-17,1025 galaxyEnaQ2Ay-120,1025 galaxyEnaQ2Ay-122,1025 galaxyEnaQ2Ay-4,1025 galaxyEnaQ2Ay-5,1025 galaxyEnaQ2Ay-6,1025 galaxyEnaQ3Ay-4,1025 galaxyEnaQ3Ay-5,1025 galaxyEnaQ3Ay-9,1025 galaxyEnaQ3B-1-1-7,1025 galaxyEnaQ3B-1-617-2,1025 phyloGenes,466 transcriptome,266 variantMuts,219 variantMuts,1111 variantMuts,1128 variantMuts,1147 variantMuts,1159 addetia abEscape,829 bloomEscMabAvg,833 bloomEscMax,839 bloomEscSerumAvg,834 bloomEscTop,837 escape,836 mccoy,829 rappuoli,836 addgene addgene,1 addgene,3 addgene,26 addgene,70 addgene,128 addgene,154 addition addgene,86 additional unipCov2Interest,66 additionally microdel,122 sarsCov2Phylo,777 address IgG_Z-score-_COVID-19_patients,266 IgM_Z-score-_COVID-19_patients,266 bpmIggCovidSum,275 bpmIgmCovidSum,275 pbm,275 adds variantMuts,1049 adjacent contacts,203 strainCons119way,1917 strainCons44way,1512 adjusted sarsCov2Phylo,537 sarsCov2PhyloPub,562 adjustments sarsCov2PhyloPub,747 admin cpgIslandExt,577 cpgIslandExtUnmasked,580 cpgIslandSuper,577 nextstrainSamples,788 adriana microdel,259 adults abEscape,100 bloomEscMabAvg,104 bloomEscMax,110 bloomEscSerumAvg,105 bloomEscTop,108 escape,107 mccoy,100 rappuoli,107 advanced crisprDet,37 af multiz7way,1176 sarsCov2PhyloMinAf001,3 sarsCov2PhyloMinAf01,3 sarsCov2PhyloPubAllFull,3 sarsCov2PhyloPubAllMinAf001,2 sarsCov2PhyloPubAllMinAf01,2 strainCons119way,2554 strainCons44way,2149 affect abEscape,714 bloomEscMabAvg,718 bloomEscMax,724 bloomEscSerumAvg,719 bloomEscTop,722 escape,721 mccoy,714 problematicSites,69 problematicSites,135 rappuoli,721 affected Q0_tracks,503 Q1_tracks,505 Q2_tracks,505 Q3_tracks,505 galaxyEna,505 galaxyEnaQ0Ba-1,501 galaxyEnaQ0Ba-1-1,501 galaxyEnaQ0Ba-1-1-11,501 galaxyEnaQ0Ba-1-17,501 galaxyEnaQ0Ba-2,501 galaxyEnaQ1Ay-4,501 galaxyEnaQ1Ay-4-2,501 galaxyEnaQ1Ay-4-2-2,501 galaxyEnaQ1Ay-43,501 galaxyEnaQ1Ba-1-17,501 galaxyEnaQ2Ay-120,501 galaxyEnaQ2Ay-122,501 galaxyEnaQ2Ay-4,501 galaxyEnaQ2Ay-5,501 galaxyEnaQ2Ay-6,501 galaxyEnaQ3Ay-4,501 galaxyEnaQ3Ay-5,501 galaxyEnaQ3Ay-9,501 galaxyEnaQ3B-1-1-7,501 galaxyEnaQ3B-1-617-2,501 problematicSites,158 problematicSites,371 variantMuts,775 affinis strainCons44way,1124 affinities rosettaMhc,230 affinity Starr_Bloom,68 Starr_Bloom_bind,65 gordon2,56 rosettaMhc,211 rosettaMhc,223 rosettaMhc,226 africa variantMuts,294 variantMuts,1392 after IgG_Z-score-_COVID-19_patients,255 IgM_Z-score-_COVID-19_patients,255 bpmIggCovidSum,264 bpmIgmCovidSum,264 cas13Crispr,51 cpgIslandExt,94 cpgIslandExt,326 cpgIslandExtUnmasked,97 cpgIslandExtUnmasked,329 cpgIslandSuper,94 cpgIslandSuper,326 kimIvtCov,32 ncbiProducts,47 pbm,264 publicAnnots,40 pyle,257 rapid,102 unipCov2Chain,8 unipCov2Chain,179 unipCov2DisulfBond,175 unipCov2Domain,174 unipCov2LocCytopl,174 unipCov2LocExtra,174 unipCov2LocSignal,175 unipCov2LocTransMemb,175 unipCov2Modif,178 unipCov2Mut,175 unipCov2Other,175 unipCov2Repeat,173 unipCov2Struct,177 ag pond,255 again abEscape,461 bloomEscMabAvg,465 bloomEscMax,471 bloomEscSerumAvg,466 bloomEscTop,469 escape,468 mccoy,461 rappuoli,468 unipCov2AliSwissprot,181 unipCov2Chain,434 unipCov2DisulfBond,430 unipCov2Domain,429 unipCov2Interest,110 unipCov2LocCytopl,429 unipCov2LocExtra,429 unipCov2LocSignal,430 unipCov2LocTransMemb,430 unipCov2Modif,433 unipCov2Mut,430 unipCov2Other,430 unipCov2Repeat,428 unipCov2Struct,432 against abEscape,167 articV4_1,38 bloomEscMabAvg,171 bloomEscMax,177 bloomEscSerumAvg,172 bloomEscTop,175 cas13Crispr,285 epitopes,171 escape,174 mccoy,167 nextstrainFreq,69 nextstrainParsimony,86 pond,171 rappuoli,174 resist,29 swift,64 agarwala windowmaskerSdust,98 agencies Q0_tracks,1149 Q1_tracks,1151 Q2_tracks,1151 Q3_tracks,1151 galaxyEna,1151 galaxyEnaQ0Ba-1,1147 galaxyEnaQ0Ba-1-1,1147 galaxyEnaQ0Ba-1-1-11,1147 galaxyEnaQ0Ba-1-17,1147 galaxyEnaQ0Ba-2,1147 galaxyEnaQ1Ay-4,1147 galaxyEnaQ1Ay-4-2,1147 galaxyEnaQ1Ay-4-2-2,1147 galaxyEnaQ1Ay-43,1147 galaxyEnaQ1Ba-1-17,1147 galaxyEnaQ2Ay-120,1147 galaxyEnaQ2Ay-122,1147 galaxyEnaQ2Ay-4,1147 galaxyEnaQ2Ay-5,1147 galaxyEnaQ2Ay-6,1147 galaxyEnaQ3Ay-4,1147 galaxyEnaQ3Ay-5,1147 galaxyEnaQ3Ay-9,1147 galaxyEnaQ3B-1-1-7,1147 galaxyEnaQ3B-1-617-2,1147 agerer cd8escape,10 cd8escape,86 cd8escape,187 agile Q0_tracks,1275 Q1_tracks,1277 Q2_tracks,1277 Q3_tracks,1277 galaxyEna,1277 galaxyEnaQ0Ba-1,1273 galaxyEnaQ0Ba-1-1,1273 galaxyEnaQ0Ba-1-1-11,1273 galaxyEnaQ0Ba-1-17,1273 galaxyEnaQ0Ba-2,1273 galaxyEnaQ1Ay-4,1273 galaxyEnaQ1Ay-4-2,1273 galaxyEnaQ1Ay-4-2-2,1273 galaxyEnaQ1Ay-43,1273 galaxyEnaQ1Ba-1-17,1273 galaxyEnaQ2Ay-120,1273 galaxyEnaQ2Ay-122,1273 galaxyEnaQ2Ay-4,1273 galaxyEnaQ2Ay-5,1273 galaxyEnaQ2Ay-6,1273 galaxyEnaQ3Ay-4,1273 galaxyEnaQ3Ay-5,1273 galaxyEnaQ3Ay-9,1273 galaxyEnaQ3B-1-1-7,1273 galaxyEnaQ3B-1-617-2,1273 ago Q1_tracks,9 Q1_tracks,16 Q2_tracks,9 Q2_tracks,16 Q3_tracks,9 Q3_tracks,16 agp gap,49 gap,58 gap,65 gold,48 gold,57 gold,64 agreement transcriptome,270 ai strainCons119way,1156 aids cpgIslandExt,86 cpgIslandExtUnmasked,89 cpgIslandSuper,86 aims Q0_tracks,34 Q1_tracks,36 Q2_tracks,36 Q3_tracks,36 galaxyEna,36 galaxyEnaQ0Ba-1,32 galaxyEnaQ0Ba-1-1,32 galaxyEnaQ0Ba-1-1-11,32 galaxyEnaQ0Ba-1-17,32 galaxyEnaQ0Ba-2,32 galaxyEnaQ1Ay-4,32 galaxyEnaQ1Ay-4-2,32 galaxyEnaQ1Ay-4-2-2,32 galaxyEnaQ1Ay-43,32 galaxyEnaQ1Ba-1-17,32 galaxyEnaQ2Ay-120,32 galaxyEnaQ2Ay-122,32 galaxyEnaQ2Ay-4,32 galaxyEnaQ2Ay-5,32 galaxyEnaQ2Ay-6,32 galaxyEnaQ3Ay-4,32 galaxyEnaQ3Ay-5,32 galaxyEnaQ3Ay-9,32 galaxyEnaQ3B-1-1-7,32 galaxyEnaQ3B-1-617-2,32 aj Starr_Bloom,241 Starr_Bloom_bind,235 abEscape,691 abEscape,726 abEscape,828 bloomEscMabAvg,695 bloomEscMabAvg,730 bloomEscMabAvg,832 bloomEscMax,701 bloomEscMax,736 bloomEscMax,838 bloomEscSerumAvg,696 bloomEscSerumAvg,731 bloomEscSerumAvg,833 bloomEscTop,699 bloomEscTop,734 bloomEscTop,836 escape,698 escape,733 escape,835 mccoy,691 mccoy,726 mccoy,828 rappuoli,698 rappuoli,733 rappuoli,835 al Calu3_07hpi,81 Calu3_07hpi,367 Kim_RNAs,12 Kim_TRS_sgmRNAs,12 Kim_non-TRS_sgmRNAs,12 ORFs,79 ORFs,365 PhyloCSF_smooth,372 PhyloCSF_smooth,377 PhyloCSF_smooth,695 PhyloCSF_smooth,700 PhyloCSF_smooth,753 PhyloCSFpower,387 PhyloCSFpower,393 PhyloCSFpower,661 PhyloCSFpower,667 Starr_Bloom,175 Starr_Bloom,259 Starr_Bloom_bind,169 Starr_Bloom_bind,253 Vero6_05hpi,81 Vero6_05hpi,367 Vero6_24hpi,81 Vero6_24hpi,367 abEscape,111 abEscape,128 abEscape,151 abEscape,184 abEscape,211 abEscape,228 abEscape,590 abEscape,627 abEscape,746 abEscape,882 bloomEscMabAvg,115 bloomEscMabAvg,132 bloomEscMabAvg,155 bloomEscMabAvg,188 bloomEscMabAvg,215 bloomEscMabAvg,232 bloomEscMabAvg,594 bloomEscMabAvg,631 bloomEscMabAvg,750 bloomEscMabAvg,886 bloomEscMax,121 bloomEscMax,138 bloomEscMax,161 bloomEscMax,194 bloomEscMax,221 bloomEscMax,238 bloomEscMax,600 bloomEscMax,637 bloomEscMax,756 bloomEscMax,892 bloomEscSerumAvg,116 bloomEscSerumAvg,133 bloomEscSerumAvg,156 bloomEscSerumAvg,189 bloomEscSerumAvg,216 bloomEscSerumAvg,233 bloomEscSerumAvg,595 bloomEscSerumAvg,632 bloomEscSerumAvg,751 bloomEscSerumAvg,887 bloomEscTop,119 bloomEscTop,136 bloomEscTop,159 bloomEscTop,192 bloomEscTop,219 bloomEscTop,236 bloomEscTop,598 bloomEscTop,635 bloomEscTop,754 bloomEscTop,890 bpmIggCovidSum,13 bpmIgmCovidSum,13 cas13Crispr,29 cas13Crispr,506 cd8escape,12 cd8escape,88 cd8escape,212 cpgIslandExt,378 cpgIslandExtUnmasked,381 cpgIslandSuper,378 epitopes,8 escape,118 escape,135 escape,158 escape,191 escape,218 escape,235 escape,597 escape,634 escape,753 escape,889 gordon2,9 gordon2,23 gordon2,256 kimIvtCov,12 kimIvtCov,29 kimIvtCov,127 kimIvtCov,146 kimMgiNc3p,6 kimMgiNc5p,6 kimNp,9 kimNp,40 kimRnaMod,10 kimRnaMod,41 kimTranscripts,12 kimTranscripts,149 kimTranscripts,249 kimTranscripts,290 mccoy,111 mccoy,128 mccoy,151 mccoy,184 mccoy,211 mccoy,228 mccoy,590 mccoy,627 mccoy,746 mccoy,882 multiz7way,952 multiz7way,1057 multiz7way,1188 pbm,14 pbmShanghai,14 pbmShanghai,515 phyloGenes,488 pond,231 pond,241 pond,273 potPathoIndel,12 problematicSites,407 problematicSites,412 problematicSites,415 pyle,63 pyle,68 rappuoli,118 rappuoli,135 rappuoli,158 rappuoli,191 rappuoli,218 rappuoli,235 rappuoli,597 rappuoli,634 rappuoli,753 rappuoli,889 recomb,8 recomb,37 recomb,80 recomb,344 rnaStructRangan,5 rnaStructRangan,25 sarsCov2Phylo,134 sarsCov2Phylo,151 sarsCov2Phylo,611 sarsCov2Phylo,625 sarsCov2Phylo,628 sarsCov2Phylo,646 sarsCov2Phylo,665 sarsCov2Phylo,700 sarsCov2Phylo,994 sarsCov2PhyloPub,145 sarsCov2PhyloPub,157 sarsCov2PhyloPub,638 sarsCov2PhyloPub,652 sarsCov2PhyloPub,670 sarsCov2PhyloPub,689 sarsCov2PhyloPub,807 sarsCov2PhyloPub,1114 strainCons119way,1966 strainCons119way,2330 strainCons119way,2435 strainCons119way,2566 strainCons44way,1561 strainCons44way,1925 strainCons44way,2030 strainCons44way,2161 targets,19 targets,232 transcriptome,263 transcriptome,333 treangen,71 treangen,157 treangen,313 variantMuts,1300 variantMuts,1346 variantMuts,1367 variantMuts,1396 variantMuts,1414 weizmanOrfs,87 weizmanOrfs,373 alaa variantMuts,1475 alanine Starr_Bloom,117 Starr_Bloom_bind,111 alastair contacts,34 contacts,400 albeit targets,105 albin treangen,304 alejo unipCov2AliSwissprot,426 unipCov2Interest,309 algorithm PhyloCSF_smooth,676 PhyloCSFpower,638 augustusGene,130 crisprDet,126 multiz7way,648 nextstrainClade,55 nextstrainSamples,1068 strainCons119way,997 strainCons119way,1727 strainCons44way,945 strainCons44way,1322 ali abEscape,794 bloomEscMabAvg,798 bloomEscMax,804 bloomEscSerumAvg,799 bloomEscTop,802 escape,801 mccoy,794 rappuoli,801 align cas13Crispr,326 multiz7way,154 strainCons119way,503 strainCons44way,451 strainName119way,2 targets,189 alignable addgene,6 aligned addgene,119 addgene,199 addgene,212 cas13Crispr,224 contacts,99 contacts,260 microdel,102 microdel,130 multiz7way,26 multiz7way,496 multiz7way,555 multiz7way,736 pdb,110 strainCons119way,51 strainCons119way,846 strainCons119way,905 strainCons119way,1496 strainCons44way,48 strainCons44way,794 strainCons44way,853 strainCons44way,1166 unipCov2AliSwissprot,154 unipCov2Chain,407 unipCov2DisulfBond,403 unipCov2Domain,402 unipCov2Interest,83 unipCov2LocCytopl,402 unipCov2LocExtra,402 unipCov2LocSignal,403 unipCov2LocTransMemb,403 unipCov2Modif,406 unipCov2Mut,403 unipCov2Other,403 unipCov2Repeat,401 unipCov2Struct,405 variantMuts,833 aligner multiz7way,1197 strainCons119way,2575 strainCons44way,2170 aligning multiz7way,239 multiz7way,1189 strainCons119way,588 strainCons119way,2567 strainCons44way,536 strainCons44way,2162 alignment PhyloCSF_smooth,205 PhyloCSF_smooth,218 PhyloCSF_smooth,316 PhyloCSF_smooth,406 PhyloCSF_smooth,486 PhyloCSFpower,8 PhyloCSFpower,220 PhyloCSFpower,233 PhyloCSFpower,331 PhyloCSFpower,421 PhyloCSFpower,501 addgene,186 contacts,136 multiz7way,4 multiz7way,57 multiz7way,124 multiz7way,295 multiz7way,340 multiz7way,360 multiz7way,501 multiz7way,591 multiz7way,692 multiz7way,727 multiz7way,794 multiz7way,822 multiz7way,1234 nextstrainSamples,764 potPathoIndel,107 potPathoIndel,152 potPathoIndel,170 problematicSites,368 sarsCov2Phylo,1028 sarsCov2PhyloPub,1148 strainCons119way,5 strainCons119way,150 strainCons119way,194 strainCons119way,201 strainCons119way,392 strainCons119way,473 strainCons119way,665 strainCons119way,682 strainCons119way,702 strainCons119way,851 strainCons119way,941 strainCons119way,1041 strainCons119way,1487 strainCons119way,1666 strainCons119way,1741 strainCons119way,1867 strainCons119way,2049 strainCons119way,2085 strainCons119way,2200 strainCons119way,2612 strainCons119wayViewalign,4 strainCons119wayViewphastcons,5 strainCons119wayViewphyloP,5 strainCons44way,5 strainCons44way,98 strainCons44way,142 strainCons44way,149 strainCons44way,340 strainCons44way,421 strainCons44way,613 strainCons44way,630 strainCons44way,650 strainCons44way,799 strainCons44way,889 strainCons44way,989 strainCons44way,1157 strainCons44way,1261 strainCons44way,1336 strainCons44way,1462 strainCons44way,1644 strainCons44way,1680 strainCons44way,1795 strainCons44way,2207 strainCons44wayViewalign,4 strainCons44wayViewphastcons,6 strainCons44wayViewphyloP,5 strainName119way,4 strainName44way,5 targets,135 unipCov2AliSwissprot,4 unipCov2AliSwissprot,201 unipCov2Chain,62 unipCov2Chain,84 unipCov2Chain,454 unipCov2DisulfBond,58 unipCov2DisulfBond,80 unipCov2DisulfBond,450 unipCov2Domain,57 unipCov2Domain,79 unipCov2Domain,449 unipCov2Interest,130 unipCov2LocCytopl,57 unipCov2LocCytopl,79 unipCov2LocCytopl,449 unipCov2LocExtra,57 unipCov2LocExtra,79 unipCov2LocExtra,449 unipCov2LocSignal,58 unipCov2LocSignal,80 unipCov2LocSignal,450 unipCov2LocTransMemb,58 unipCov2LocTransMemb,80 unipCov2LocTransMemb,450 unipCov2Modif,61 unipCov2Modif,83 unipCov2Modif,453 unipCov2Mut,58 unipCov2Mut,80 unipCov2Mut,450 unipCov2Other,58 unipCov2Other,80 unipCov2Other,450 unipCov2Repeat,56 unipCov2Repeat,78 unipCov2Repeat,448 unipCov2Struct,60 unipCov2Struct,82 unipCov2Struct,452 vaccines,16 vaccines,226 vaccines,362 vaccines,379 variantMuts,853 variantMuts,1451 alignments PhyloCSF_smooth,32 PhyloCSFpower,47 addgene,202 augustusGene,300 kimIvtCov,165 multiz7way,20 multiz7way,41 multiz7way,90 multiz7way,135 multiz7way,291 multiz7way,303 multiz7way,322 multiz7way,572 multiz7way,638 multiz7way,659 multiz7way,734 multiz7way,807 multiz7way,1222 multiz7way,1262 pdb,17 pdb,114 rfam,87 rfam,107 rfam,146 sarsCov2Phylo,1066 sarsCov2Phylo,1133 sarsCov2PhyloPub,1186 sarsCov2PhyloPub,1266 strainCons119way,27 strainCons119way,46 strainCons119way,134 strainCons119way,439 strainCons119way,484 strainCons119way,646 strainCons119way,922 strainCons119way,987 strainCons119way,1008 strainCons119way,1494 strainCons119way,1732 strainCons119way,2600 strainCons119way,2640 strainCons119wayViewalign,2 strainCons44way,24 strainCons44way,43 strainCons44way,82 strainCons44way,387 strainCons44way,432 strainCons44way,594 strainCons44way,870 strainCons44way,935 strainCons44way,956 strainCons44way,1164 strainCons44way,1327 strainCons44way,2195 strainCons44way,2235 strainCons44wayViewalign,2 targets,224 unipCov2AliSwissprot,2 unipCov2AliSwissprot,223 aligns nextstrainFreq,67 nextstrainParsimony,84 sarsCov2Phylo,582 sarsCov2PhyloPub,609 alinne rnaStructRangan,91 alkuzweny variantMuts,1468 all Calu3_07hpi,64 IgG_Z-score-_COVID-19_patients,129 IgG_Z-score-_COVID-19_patients,197 IgG_Z-score-_COVID-19_patients,269 IgM_Z-score-_COVID-19_patients,129 IgM_Z-score-_COVID-19_patients,197 IgM_Z-score-_COVID-19_patients,269 Kim_RNAs,6 ORFs,62 PhyloCSF_smooth,212 PhyloCSF_smooth,243 PhyloCSFpower,227 PhyloCSFpower,258 Q0_tracks,207 Q0_tracks,539 Q0_tracks,707 Q0_tracks,1054 Q0_tracks,1082 Q1_tracks,209 Q1_tracks,541 Q1_tracks,709 Q1_tracks,1056 Q1_tracks,1084 Q2_tracks,209 Q2_tracks,541 Q2_tracks,709 Q2_tracks,1056 Q2_tracks,1084 Q3_tracks,209 Q3_tracks,541 Q3_tracks,709 Q3_tracks,1056 Q3_tracks,1084 Starr_Bloom,57 Starr_Bloom,79 Starr_Bloom,191 Starr_Bloom_bind,54 Starr_Bloom_bind,73 Starr_Bloom_bind,185 Vero6_05hpi,64 Vero6_24hpi,64 abEscape,75 abEscape,441 augustusGene,207 bloomEscMabAvg,14 bloomEscMabAvg,79 bloomEscMabAvg,445 bloomEscMax,85 bloomEscMax,451 bloomEscSerumAvg,80 bloomEscSerumAvg,446 bloomEscTop,83 bloomEscTop,449 bpmIggCovidSum,138 bpmIggCovidSum,206 bpmIggCovidSum,278 bpmIgmCovidSum,138 bpmIgmCovidSum,206 bpmIgmCovidSum,278 cas13Crispr,44 cas13Crispr,195 cas13Crispr,242 contacts,109 cpgIslandExt,327 cpgIslandExt,527 cpgIslandExtUnmasked,6 cpgIslandExtUnmasked,330 cpgIslandExtUnmasked,530 cpgIslandSuper,327 cpgIslandSuper,527 escape,82 escape,448 galaxyEna,209 galaxyEna,541 galaxyEna,709 galaxyEna,1056 galaxyEna,1084 galaxyEnaQ0Ba-1,205 galaxyEnaQ0Ba-1,537 galaxyEnaQ0Ba-1,705 galaxyEnaQ0Ba-1,1052 galaxyEnaQ0Ba-1,1080 galaxyEnaQ0Ba-1-1,205 galaxyEnaQ0Ba-1-1,537 galaxyEnaQ0Ba-1-1,705 galaxyEnaQ0Ba-1-1,1052 galaxyEnaQ0Ba-1-1,1080 galaxyEnaQ0Ba-1-1-11,205 galaxyEnaQ0Ba-1-1-11,537 galaxyEnaQ0Ba-1-1-11,705 galaxyEnaQ0Ba-1-1-11,1052 galaxyEnaQ0Ba-1-1-11,1080 galaxyEnaQ0Ba-1-17,205 galaxyEnaQ0Ba-1-17,537 galaxyEnaQ0Ba-1-17,705 galaxyEnaQ0Ba-1-17,1052 galaxyEnaQ0Ba-1-17,1080 galaxyEnaQ0Ba-2,205 galaxyEnaQ0Ba-2,537 galaxyEnaQ0Ba-2,705 galaxyEnaQ0Ba-2,1052 galaxyEnaQ0Ba-2,1080 galaxyEnaQ1Ay-4,205 galaxyEnaQ1Ay-4,537 galaxyEnaQ1Ay-4,705 galaxyEnaQ1Ay-4,1052 galaxyEnaQ1Ay-4,1080 galaxyEnaQ1Ay-4-2,205 galaxyEnaQ1Ay-4-2,537 galaxyEnaQ1Ay-4-2,705 galaxyEnaQ1Ay-4-2,1052 galaxyEnaQ1Ay-4-2,1080 galaxyEnaQ1Ay-4-2-2,205 galaxyEnaQ1Ay-4-2-2,537 galaxyEnaQ1Ay-4-2-2,705 galaxyEnaQ1Ay-4-2-2,1052 galaxyEnaQ1Ay-4-2-2,1080 galaxyEnaQ1Ay-43,205 galaxyEnaQ1Ay-43,537 galaxyEnaQ1Ay-43,705 galaxyEnaQ1Ay-43,1052 galaxyEnaQ1Ay-43,1080 galaxyEnaQ1Ba-1-17,205 galaxyEnaQ1Ba-1-17,537 galaxyEnaQ1Ba-1-17,705 galaxyEnaQ1Ba-1-17,1052 galaxyEnaQ1Ba-1-17,1080 galaxyEnaQ2Ay-120,205 galaxyEnaQ2Ay-120,537 galaxyEnaQ2Ay-120,705 galaxyEnaQ2Ay-120,1052 galaxyEnaQ2Ay-120,1080 galaxyEnaQ2Ay-122,205 galaxyEnaQ2Ay-122,537 galaxyEnaQ2Ay-122,705 galaxyEnaQ2Ay-122,1052 galaxyEnaQ2Ay-122,1080 galaxyEnaQ2Ay-4,205 galaxyEnaQ2Ay-4,537 galaxyEnaQ2Ay-4,705 galaxyEnaQ2Ay-4,1052 galaxyEnaQ2Ay-4,1080 galaxyEnaQ2Ay-5,205 galaxyEnaQ2Ay-5,537 galaxyEnaQ2Ay-5,705 galaxyEnaQ2Ay-5,1052 galaxyEnaQ2Ay-5,1080 galaxyEnaQ2Ay-6,205 galaxyEnaQ2Ay-6,537 galaxyEnaQ2Ay-6,705 galaxyEnaQ2Ay-6,1052 galaxyEnaQ2Ay-6,1080 galaxyEnaQ3Ay-4,205 galaxyEnaQ3Ay-4,537 galaxyEnaQ3Ay-4,705 galaxyEnaQ3Ay-4,1052 galaxyEnaQ3Ay-4,1080 galaxyEnaQ3Ay-5,205 galaxyEnaQ3Ay-5,537 galaxyEnaQ3Ay-5,705 galaxyEnaQ3Ay-5,1052 galaxyEnaQ3Ay-5,1080 galaxyEnaQ3Ay-9,205 galaxyEnaQ3Ay-9,537 galaxyEnaQ3Ay-9,705 galaxyEnaQ3Ay-9,1052 galaxyEnaQ3Ay-9,1080 galaxyEnaQ3B-1-1-7,205 galaxyEnaQ3B-1-1-7,537 galaxyEnaQ3B-1-1-7,705 galaxyEnaQ3B-1-1-7,1052 galaxyEnaQ3B-1-1-7,1080 galaxyEnaQ3B-1-617-2,205 galaxyEnaQ3B-1-617-2,537 galaxyEnaQ3B-1-617-2,705 galaxyEnaQ3B-1-617-2,1052 galaxyEnaQ3B-1-617-2,1080 kimIvtCov,97 kimNp,91 kimTranscripts,45 kimTranscripts,136 kimTranscripts,253 kimTranscripts,295 mccoy,75 mccoy,441 microdel,75 microdel,190 multiz7way,271 multiz7way,276 multiz7way,494 ncbiGeneBGP,196 ncbiProducts,212 nextstrainClade,103 nextstrainFreqAll,1 nextstrainFreqAll,3 nextstrainFreqViewAll,1 nextstrainParsimony,140 nextstrainParsimony,421 nextstrainSamples,269 nextstrainSamples,270 nextstrainSamples,274 nextstrainSamples,280 nextstrainSamples,332 nextstrainSamples,695 nextstrainSamples,733 nextstrainSamples,898 nextstrainSamples,989 nextstrainSamplesAll,1 nextstrainSamplesViewAll,1 pbm,138 pbm,206 pbm,278 pbmShanghai,231 pbmShanghai,321 pbmShanghai,395 poranHla1,52 poranHla2,52 potPathoIndel,196 primers,100 primers,185 primers,193 pyle,265 rapid,123 rappuoli,82 rappuoli,448 recomb,71 rosettaMhc,188 rosettaMhc,198 rosettaMhc,253 rosettaMhc,268 rosettaMhc,299 rosettaMhc,311 sarsCov2Phylo,337 sarsCov2Phylo,573 sarsCov2Phylo,583 sarsCov2Phylo,834 sarsCov2PhyloFull,1 sarsCov2PhyloFull,3 sarsCov2PhyloPub,348 sarsCov2PhyloPub,598 sarsCov2PhyloPub,610 sarsCov2PhyloPub,850 sarsCov2PhyloPub,893 sarsCov2PhyloPub,917 sarsCov2PhyloPubAllFull,5 strainCons119way,72 strainCons119way,128 strainCons119way,620 strainCons119way,625 strainCons119way,627 strainCons119way,632 strainCons119way,844 strainCons119way,1782 strainCons119way,2018 strainCons44way,76 strainCons44way,568 strainCons44way,573 strainCons44way,575 strainCons44way,580 strainCons44way,792 strainCons44way,1377 strainCons44way,1613 targets,68 transcriptome,37 transcriptome,174 transcriptome,304 treangen,190 unipCov2AliSwissprot,242 unipCov2AliSwissprot,435 unipCov2Chain,72 unipCov2Chain,94 unipCov2Chain,254 unipCov2Chain,472 unipCov2Chain,664 unipCov2DisulfBond,68 unipCov2DisulfBond,90 unipCov2DisulfBond,250 unipCov2DisulfBond,468 unipCov2DisulfBond,660 unipCov2Domain,67 unipCov2Domain,89 unipCov2Domain,249 unipCov2Domain,467 unipCov2Domain,659 unipCov2Interest,148 unipCov2Interest,318 unipCov2LocCytopl,67 unipCov2LocCytopl,89 unipCov2LocCytopl,249 unipCov2LocCytopl,467 unipCov2LocCytopl,659 unipCov2LocExtra,67 unipCov2LocExtra,89 unipCov2LocExtra,249 unipCov2LocExtra,467 unipCov2LocExtra,659 unipCov2LocSignal,68 unipCov2LocSignal,90 unipCov2LocSignal,250 unipCov2LocSignal,468 unipCov2LocSignal,660 unipCov2LocTransMemb,68 unipCov2LocTransMemb,90 unipCov2LocTransMemb,250 unipCov2LocTransMemb,468 unipCov2LocTransMemb,660 unipCov2Modif,71 unipCov2Modif,93 unipCov2Modif,253 unipCov2Modif,471 unipCov2Modif,663 unipCov2Mut,68 unipCov2Mut,90 unipCov2Mut,250 unipCov2Mut,468 unipCov2Mut,660 unipCov2Other,68 unipCov2Other,90 unipCov2Other,250 unipCov2Other,468 unipCov2Other,660 unipCov2Repeat,66 unipCov2Repeat,88 unipCov2Repeat,248 unipCov2Repeat,466 unipCov2Repeat,658 unipCov2Struct,70 unipCov2Struct,92 unipCov2Struct,252 unipCov2Struct,470 unipCov2Struct,662 variantMuts,788 variantMuts,893 variantMuts,1084 variantMuts,1180 weizmanOrfs,70 all-species strainCons119way,1708 strainCons44way,1303 allele Q0_tracks,583 Q1_tracks,585 Q2_tracks,585 Q3_tracks,585 Starr_Bloom,39 Starr_Bloom,43 Starr_Bloom_bind,36 Starr_Bloom_bind,40 galaxyEna,585 galaxyEnaQ0Ba-1,581 galaxyEnaQ0Ba-1-1,581 galaxyEnaQ0Ba-1-1-11,581 galaxyEnaQ0Ba-1-17,581 galaxyEnaQ0Ba-2,581 galaxyEnaQ1Ay-4,581 galaxyEnaQ1Ay-4-2,581 galaxyEnaQ1Ay-4-2-2,581 galaxyEnaQ1Ay-43,581 galaxyEnaQ1Ba-1-17,581 galaxyEnaQ2Ay-120,581 galaxyEnaQ2Ay-122,581 galaxyEnaQ2Ay-4,581 galaxyEnaQ2Ay-5,581 galaxyEnaQ2Ay-6,581 galaxyEnaQ3Ay-4,581 galaxyEnaQ3Ay-5,581 galaxyEnaQ3Ay-9,581 galaxyEnaQ3B-1-1-7,581 galaxyEnaQ3B-1-617-2,581 nextstrainFreq,6 nextstrainFreq,84 nextstrainFreq19A,6 nextstrainFreq19B,6 nextstrainFreq20A,6 nextstrainFreq20B,6 nextstrainFreq20C,6 nextstrainFreq20D,6 nextstrainFreq20F,6 nextstrainFreq20G,6 nextstrainFreq21A_Delta,8 nextstrainFreq21B_Kappa,8 nextstrainFreq21D_Eta,8 nextstrainFreq21E_Theta,8 nextstrainFreq21F_Iota,8 nextstrainFreq21G_Lambda,8 nextstrainFreq21H_Mu,8 nextstrainFreq21I_Delta,8 nextstrainFreq21J_Delta,8 nextstrainFreqAll,6 nextstrainFreqViewAll,6 nextstrainFreqViewNewClades,6 nextstrainParsimony,221 nextstrainSamples,161 nextstrainSamples,260 nextstrainSamples,407 nextstrainSamples,413 problematicSites,286 rosettaMhc,103 sarsCov2Phylo,47 sarsCov2Phylo,411 sarsCov2Phylo,414 sarsCov2PhyloMinAf001,10 sarsCov2PhyloMinAf01,10 sarsCov2PhyloPub,61 sarsCov2PhyloPub,440 sarsCov2PhyloPub,443 sarsCov2PhyloPub,819 sarsCov2PhyloPub,835 sarsCov2PhyloPub,845 sarsCov2PhyloPubAllMinAf001,9 sarsCov2PhyloPubAllMinAf01,9 treangen,143 allele-frequency Q0_tracks,903 Q1_tracks,905 Q2_tracks,905 Q3_tracks,905 galaxyEna,905 galaxyEnaQ0Ba-1,901 galaxyEnaQ0Ba-1-1,901 galaxyEnaQ0Ba-1-1-11,901 galaxyEnaQ0Ba-1-17,901 galaxyEnaQ0Ba-2,901 galaxyEnaQ1Ay-4,901 galaxyEnaQ1Ay-4-2,901 galaxyEnaQ1Ay-4-2-2,901 galaxyEnaQ1Ay-43,901 galaxyEnaQ1Ba-1-17,901 galaxyEnaQ2Ay-120,901 galaxyEnaQ2Ay-122,901 galaxyEnaQ2Ay-4,901 galaxyEnaQ2Ay-5,901 galaxyEnaQ2Ay-6,901 galaxyEnaQ3Ay-4,901 galaxyEnaQ3Ay-5,901 galaxyEnaQ3Ay-9,901 galaxyEnaQ3B-1-1-7,901 galaxyEnaQ3B-1-617-2,901 alleles epitopes,100 iedb,22 nextstrainParsimony,22 nextstrainSamples,438 nextstrainSamples,441 problematicSites,196 problematicSites,251 rosettaMhc,140 sarsCov2Phylo,474 sarsCov2Phylo,477 sarsCov2PhyloPub,503 sarsCov2PhyloPub,506 allelesfrequency epitopes,111 allergy iedb,29 allow Q0_tracks,83 Q1_tracks,85 Q2_tracks,85 Q3_tracks,85 galaxyEna,85 galaxyEnaQ0Ba-1,81 galaxyEnaQ0Ba-1-1,81 galaxyEnaQ0Ba-1-1-11,81 galaxyEnaQ0Ba-1-17,81 galaxyEnaQ0Ba-2,81 galaxyEnaQ1Ay-4,81 galaxyEnaQ1Ay-4-2,81 galaxyEnaQ1Ay-4-2-2,81 galaxyEnaQ1Ay-43,81 galaxyEnaQ1Ba-1-17,81 galaxyEnaQ2Ay-120,81 galaxyEnaQ2Ay-122,81 galaxyEnaQ2Ay-4,81 galaxyEnaQ2Ay-5,81 galaxyEnaQ2Ay-6,81 galaxyEnaQ3Ay-4,81 galaxyEnaQ3Ay-5,81 galaxyEnaQ3Ay-9,81 galaxyEnaQ3B-1-1-7,81 galaxyEnaQ3B-1-617-2,81 kimIvtCov,62 multiz7way,254 strainCons119way,603 strainCons44way,551 vaccines,246 allows augustusGene,168 transcriptome,137 alm sarsCov2Phylo,149 sarsCov2Phylo,972 sarsCov2PhyloPub,155 sarsCov2PhyloPub,1092 alone augustusGene,33 along Q0_tracks,73 Q1_tracks,75 Q2_tracks,75 Q3_tracks,75 cas13Crispr,214 galaxyEna,75 galaxyEnaQ0Ba-1,71 galaxyEnaQ0Ba-1-1,71 galaxyEnaQ0Ba-1-1-11,71 galaxyEnaQ0Ba-1-17,71 galaxyEnaQ0Ba-2,71 galaxyEnaQ1Ay-4,71 galaxyEnaQ1Ay-4-2,71 galaxyEnaQ1Ay-4-2-2,71 galaxyEnaQ1Ay-43,71 galaxyEnaQ1Ba-1-17,71 galaxyEnaQ2Ay-120,71 galaxyEnaQ2Ay-122,71 galaxyEnaQ2Ay-4,71 galaxyEnaQ2Ay-5,71 galaxyEnaQ2Ay-6,71 galaxyEnaQ3Ay-4,71 galaxyEnaQ3Ay-5,71 galaxyEnaQ3Ay-9,71 galaxyEnaQ3B-1-1-7,71 galaxyEnaQ3B-1-617-2,71 multiz7way,680 nextstrainGene,57 nextstrainParsimony,112 nextstrainSamples,72 pbmShanghai,95 pond,101 pond,148 recomb,250 strainCons119way,1029 strainCons119way,1909 strainCons44way,977 strainCons44way,1504 variantMuts,247 alongside rosettaMhc,310 alpha variantAaMutsV2_B_1_1_7,1 variantAaMutsV2_B_1_1_7,4 variantMuts,197 variantMuts,268 variantNucMutsV2_B_1_1_7,1 variantNucMutsV2_B_1_1_7,4 alphacov strainCons119way,1415 also Calu3_07hpi,48 IgG_Z-score-_COVID-19_patients,180 IgG_Z-score-_COVID-19_patients,353 IgM_Z-score-_COVID-19_patients,180 IgM_Z-score-_COVID-19_patients,353 ORFs,46 Q0_tracks,925 Q1_tracks,927 Q2_tracks,927 Q3_tracks,927 Vero6_05hpi,48 Vero6_24hpi,48 artic,136 articV4,136 articV4_1,149 bpmIggCovidSum,189 bpmIggCovidSum,362 bpmIgmCovidSum,189 bpmIgmCovidSum,362 cas13Crispr,94 cas13Crispr,421 contacts,349 cpgIslandExt,531 cpgIslandExtUnmasked,534 cpgIslandSuper,531 galaxyEna,927 galaxyEnaQ0Ba-1,923 galaxyEnaQ0Ba-1-1,923 galaxyEnaQ0Ba-1-1-11,923 galaxyEnaQ0Ba-1-17,923 galaxyEnaQ0Ba-2,923 galaxyEnaQ1Ay-4,923 galaxyEnaQ1Ay-4-2,923 galaxyEnaQ1Ay-4-2-2,923 galaxyEnaQ1Ay-43,923 galaxyEnaQ1Ba-1-17,923 galaxyEnaQ2Ay-120,923 galaxyEnaQ2Ay-122,923 galaxyEnaQ2Ay-4,923 galaxyEnaQ2Ay-5,923 galaxyEnaQ2Ay-6,923 galaxyEnaQ3Ay-4,923 galaxyEnaQ3Ay-5,923 galaxyEnaQ3Ay-9,923 galaxyEnaQ3B-1-1-7,923 galaxyEnaQ3B-1-617-2,923 gap,31 gold,33 gordon2,109 kimNp,89 kimRnaMod,183 kimTranscripts,400 ncbiGeneBGP,121 ncbiProducts,137 nextstrainClade,210 nextstrainSamples,689 pbm,189 pbm,362 pbmShanghai,121 pbmShanghai,198 pdb,57 phyloGenes,114 phyloGenes,140 phyloGenes,213 phyloGenes,236 phyloGenes,266 phyloGenes,317 phyloGenes,397 poranHla1,210 poranHla2,210 primers,347 rapid,27 rapid,290 recomb,304 rfam,133 sarsCov2PhyloPub,744 spikeMuts,287 strainCons119way,111 strainCons119way,158 strainCons119way,204 strainCons44way,59 strainCons44way,106 strainCons44way,152 swift,219 transcriptome,406 treangen,269 unipCov2AliSwissprot,350 unipCov2Chain,580 unipCov2DisulfBond,576 unipCov2Domain,575 unipCov2Interest,256 unipCov2LocCytopl,575 unipCov2LocExtra,575 unipCov2LocSignal,576 unipCov2LocTransMemb,576 unipCov2Modif,579 unipCov2Mut,576 unipCov2Other,576 unipCov2Repeat,574 unipCov2Struct,578 vaccines,465 variantMuts,868 variantMuts,1207 varskip,142 weizmanOrfs,54 alt sarsCov2PhyloMinAf001,2 sarsCov2PhyloMinAf01,2 alternate nextstrainFreq,5 nextstrainFreq,83 nextstrainFreq19A,5 nextstrainFreq19B,5 nextstrainFreq20A,5 nextstrainFreq20B,5 nextstrainFreq20C,5 nextstrainFreq20D,5 nextstrainFreq20F,5 nextstrainFreq20G,5 nextstrainFreq21A_Delta,7 nextstrainFreq21B_Kappa,7 nextstrainFreq21D_Eta,7 nextstrainFreq21E_Theta,7 nextstrainFreq21F_Iota,7 nextstrainFreq21G_Lambda,7 nextstrainFreq21H_Mu,7 nextstrainFreq21I_Delta,7 nextstrainFreq21J_Delta,7 nextstrainFreqAll,5 nextstrainFreqViewAll,5 nextstrainFreqViewNewClades,5 nextstrainParsimony,220 nextstrainSamples,259 sarsCov2Phylo,46 sarsCov2PhyloMinAf001,9 sarsCov2PhyloMinAf01,9 sarsCov2PhyloPub,60 sarsCov2PhyloPub,834 sarsCov2PhyloPub,844 sarsCov2PhyloPubAllMinAf001,8 sarsCov2PhyloPubAllMinAf01,8 variantMuts,734 variantMuts,755 alternating gold,89 alternative augustusGene,122 problematicSites,195 problematicSites,250 problematicSites,285 spikeMuts,222 alternatives-from-sampling augustusGene,131 altman primers,375 altogether PhyloCSF_smooth,241 PhyloCSFpower,256 always Q0_tracks,799 Q1_tracks,801 Q2_tracks,801 Q3_tracks,801 galaxyEna,801 galaxyEnaQ0Ba-1,797 galaxyEnaQ0Ba-1-1,797 galaxyEnaQ0Ba-1-1-11,797 galaxyEnaQ0Ba-1-17,797 galaxyEnaQ0Ba-2,797 galaxyEnaQ1Ay-4,797 galaxyEnaQ1Ay-4-2,797 galaxyEnaQ1Ay-4-2-2,797 galaxyEnaQ1Ay-43,797 galaxyEnaQ1Ba-1-17,797 galaxyEnaQ2Ay-120,797 galaxyEnaQ2Ay-122,797 galaxyEnaQ2Ay-4,797 galaxyEnaQ2Ay-5,797 galaxyEnaQ2Ay-6,797 galaxyEnaQ3Ay-4,797 galaxyEnaQ3Ay-5,797 galaxyEnaQ3Ay-9,797 galaxyEnaQ3B-1-1-7,797 galaxyEnaQ3B-1-617-2,797 gold,120 unipCov2Chain,314 unipCov2DisulfBond,310 unipCov2Domain,309 unipCov2LocCytopl,309 unipCov2LocExtra,309 unipCov2LocSignal,310 unipCov2LocTransMemb,310 unipCov2Modif,313 unipCov2Mut,310 unipCov2Other,310 unipCov2Repeat,308 unipCov2Struct,312 am pyle,288 pyle,317 ambiguous phyloGenes,43 phyloGenes,568 problematicSites,181 problematicSites,188 problematicSites,243 sarsCov2Phylo,761 ambulatory abEscape,99 bloomEscMabAvg,103 bloomEscMax,109 bloomEscSerumAvg,104 bloomEscTop,107 escape,106 mccoy,99 rappuoli,106 amended problematicSites,206 amino IgG_Z-score-_COVID-19_patients,436 IgM_Z-score-_COVID-19_patients,436 PhyloCSF_smooth,48 PhyloCSF_smooth,73 PhyloCSF_smooth,87 PhyloCSFpower,63 PhyloCSFpower,88 PhyloCSFpower,102 Q0_tracks,483 Q0_tracks,504 Q1_tracks,485 Q1_tracks,506 Q2_tracks,485 Q2_tracks,506 Q3_tracks,485 Q3_tracks,506 Starr_Bloom,60 Starr_Bloom,87 Starr_Bloom,112 Starr_Bloom,121 Starr_Bloom_bind,57 Starr_Bloom_bind,81 Starr_Bloom_bind,106 Starr_Bloom_bind,115 abEscape,392 abEscape,444 abEscape,459 abEscape,493 abEscape,548 bloomEscMabAvg,396 bloomEscMabAvg,448 bloomEscMabAvg,463 bloomEscMabAvg,497 bloomEscMabAvg,552 bloomEscMax,14 bloomEscMax,402 bloomEscMax,454 bloomEscMax,469 bloomEscMax,503 bloomEscMax,558 bloomEscSerumAvg,397 bloomEscSerumAvg,449 bloomEscSerumAvg,464 bloomEscSerumAvg,498 bloomEscSerumAvg,553 bloomEscTop,400 bloomEscTop,452 bloomEscTop,467 bloomEscTop,501 bloomEscTop,556 bloomEscTotal,14 bpmIggCovidSum,445 bpmIgmCovidSum,445 contacts,110 contacts,126 contacts,149 contacts,232 contacts,254 escape,399 escape,451 escape,466 escape,500 escape,555 galaxyEna,485 galaxyEna,506 galaxyEnaQ0Ba-1,4 galaxyEnaQ0Ba-1,481 galaxyEnaQ0Ba-1,502 galaxyEnaQ0Ba-1-1,4 galaxyEnaQ0Ba-1-1,481 galaxyEnaQ0Ba-1-1,502 galaxyEnaQ0Ba-1-1-11,4 galaxyEnaQ0Ba-1-1-11,481 galaxyEnaQ0Ba-1-1-11,502 galaxyEnaQ0Ba-1-17,4 galaxyEnaQ0Ba-1-17,481 galaxyEnaQ0Ba-1-17,502 galaxyEnaQ0Ba-2,4 galaxyEnaQ0Ba-2,481 galaxyEnaQ0Ba-2,502 galaxyEnaQ1Ay-4,4 galaxyEnaQ1Ay-4,481 galaxyEnaQ1Ay-4,502 galaxyEnaQ1Ay-4-2,4 galaxyEnaQ1Ay-4-2,481 galaxyEnaQ1Ay-4-2,502 galaxyEnaQ1Ay-4-2-2,4 galaxyEnaQ1Ay-4-2-2,481 galaxyEnaQ1Ay-4-2-2,502 galaxyEnaQ1Ay-43,4 galaxyEnaQ1Ay-43,481 galaxyEnaQ1Ay-43,502 galaxyEnaQ1Ba-1-17,4 galaxyEnaQ1Ba-1-17,481 galaxyEnaQ1Ba-1-17,502 galaxyEnaQ2Ay-120,4 galaxyEnaQ2Ay-120,481 galaxyEnaQ2Ay-120,502 galaxyEnaQ2Ay-122,4 galaxyEnaQ2Ay-122,481 galaxyEnaQ2Ay-122,502 galaxyEnaQ2Ay-4,4 galaxyEnaQ2Ay-4,481 galaxyEnaQ2Ay-4,502 galaxyEnaQ2Ay-5,4 galaxyEnaQ2Ay-5,481 galaxyEnaQ2Ay-5,502 galaxyEnaQ2Ay-6,4 galaxyEnaQ2Ay-6,481 galaxyEnaQ2Ay-6,502 galaxyEnaQ3Ay-4,4 galaxyEnaQ3Ay-4,481 galaxyEnaQ3Ay-4,502 galaxyEnaQ3Ay-5,4 galaxyEnaQ3Ay-5,481 galaxyEnaQ3Ay-5,502 galaxyEnaQ3Ay-9,4 galaxyEnaQ3Ay-9,481 galaxyEnaQ3Ay-9,502 galaxyEnaQ3B-1-1-7,4 galaxyEnaQ3B-1-1-7,481 galaxyEnaQ3B-1-1-7,502 galaxyEnaQ3B-1-617-2,4 galaxyEnaQ3B-1-617-2,481 galaxyEnaQ3B-1-617-2,502 mccoy,392 mccoy,444 mccoy,459 mccoy,493 mccoy,548 multiz7way,191 multiz7way,213 multiz7way,320 multiz7way,335 pbm,445 rappuoli,399 rappuoli,451 rappuoli,466 rappuoli,500 rappuoli,555 resist,19 resistPred,27 resistPred,103 spikeMuts,93 strainCons119way,540 strainCons119way,562 strainCons44way,488 strainCons44way,510 treangen,126 treangen,273 unipCov2Chain,197 unipCov2Chain,209 unipCov2DisulfBond,193 unipCov2DisulfBond,205 unipCov2Domain,192 unipCov2Domain,204 unipCov2LocCytopl,192 unipCov2LocCytopl,204 unipCov2LocExtra,192 unipCov2LocExtra,204 unipCov2LocSignal,193 unipCov2LocSignal,205 unipCov2LocTransMemb,193 unipCov2LocTransMemb,205 unipCov2Modif,4 unipCov2Modif,196 unipCov2Modif,208 unipCov2Mut,3 unipCov2Mut,193 unipCov2Mut,205 unipCov2Other,193 unipCov2Other,205 unipCov2Repeat,191 unipCov2Repeat,203 unipCov2Struct,195 unipCov2Struct,207 variantAaMutsV2_B_1_1_7,9 variantAaMutsV2_B_1_351,9 variantAaMutsV2_B_1_429,9 variantAaMutsV2_B_1_525,8 variantAaMutsV2_B_1_526,9 variantAaMutsV2_B_1_617_1,9 variantAaMutsV2_B_1_617_2,9 variantAaMutsV2_B_1_621,9 variantAaMutsV2_C_37,9 variantAaMutsV2_P_1,9 variantAaMuts_BA_2,7 variantAaMuts_BA_2_12_1,7 variantAaMuts_BA_2_75,7 variantAaMuts_BA_2_86,7 variantAaMuts_BA_4,7 variantAaMuts_BA_5,7 variantAaMuts_BQ_1,7 variantAaMuts_B_1_1_529,9 variantAaMuts_CH_1_1,7 variantAaMuts_EG_5_1,7 variantAaMuts_HK_3,7 variantAaMuts_JN_1,7 variantAaMuts_XBB,7 variantAaMuts_XBB_1_16,7 variantAaMuts_XBB_1_5,7 variantAaMuts_XBB_1_5_70,7 variantAaMuts_XBB_1_9,7 variantAaMuts_XBB_2_3,7 variantMuts,28 variantMuts,719 variantMuts,728 variantMuts,735 among PhyloCSF_smooth,105 PhyloCSFpower,120 Q0_tracks,434 Q1_tracks,436 Q2_tracks,436 Q3_tracks,436 abEscape,357 bloomEscMabAvg,361 bloomEscMax,367 bloomEscSerumAvg,362 bloomEscTop,365 cas13Crispr,249 escape,364 galaxyEna,436 galaxyEnaQ0Ba-1,432 galaxyEnaQ0Ba-1-1,432 galaxyEnaQ0Ba-1-1-11,432 galaxyEnaQ0Ba-1-17,432 galaxyEnaQ0Ba-2,432 galaxyEnaQ1Ay-4,432 galaxyEnaQ1Ay-4-2,432 galaxyEnaQ1Ay-4-2-2,432 galaxyEnaQ1Ay-43,432 galaxyEnaQ1Ba-1-17,432 galaxyEnaQ2Ay-120,432 galaxyEnaQ2Ay-122,432 galaxyEnaQ2Ay-4,432 galaxyEnaQ2Ay-5,432 galaxyEnaQ2Ay-6,432 galaxyEnaQ3Ay-4,432 galaxyEnaQ3Ay-5,432 galaxyEnaQ3Ay-9,432 galaxyEnaQ3B-1-1-7,432 galaxyEnaQ3B-1-617-2,432 mccoy,357 multiz7way,993 primers,245 rappuoli,364 strainCons119way,2371 strainCons44way,1966 treangen,41 amp phyloGenes,562 vaccines,603 amplicon rapid,7 rapid,106 swift,19 ampliconic Q0_tracks,112 Q1_tracks,114 Q2_tracks,114 Q3_tracks,114 galaxyEna,114 galaxyEnaQ0Ba-1,110 galaxyEnaQ0Ba-1-1,110 galaxyEnaQ0Ba-1-1-11,110 galaxyEnaQ0Ba-1-17,110 galaxyEnaQ0Ba-2,110 galaxyEnaQ1Ay-4,110 galaxyEnaQ1Ay-4-2,110 galaxyEnaQ1Ay-4-2-2,110 galaxyEnaQ1Ay-43,110 galaxyEnaQ1Ba-1-17,110 galaxyEnaQ2Ay-120,110 galaxyEnaQ2Ay-122,110 galaxyEnaQ2Ay-4,110 galaxyEnaQ2Ay-5,110 galaxyEnaQ2Ay-6,110 galaxyEnaQ3Ay-4,110 galaxyEnaQ3Ay-5,110 galaxyEnaQ3Ay-9,110 galaxyEnaQ3B-1-1-7,110 galaxyEnaQ3B-1-617-2,110 amplicons Q0_tracks,126 Q1_tracks,128 Q2_tracks,128 Q3_tracks,128 galaxyEna,128 galaxyEnaQ0Ba-1,124 galaxyEnaQ0Ba-1-1,124 galaxyEnaQ0Ba-1-1-11,124 galaxyEnaQ0Ba-1-17,124 galaxyEnaQ0Ba-2,124 galaxyEnaQ1Ay-4,124 galaxyEnaQ1Ay-4-2,124 galaxyEnaQ1Ay-4-2-2,124 galaxyEnaQ1Ay-43,124 galaxyEnaQ1Ba-1-17,124 galaxyEnaQ2Ay-120,124 galaxyEnaQ2Ay-122,124 galaxyEnaQ2Ay-4,124 galaxyEnaQ2Ay-5,124 galaxyEnaQ2Ay-6,124 galaxyEnaQ3Ay-4,124 galaxyEnaQ3Ay-5,124 galaxyEnaQ3Ay-9,124 galaxyEnaQ3B-1-1-7,124 galaxyEnaQ3B-1-617-2,124 rapid,51 rapid,78 rapid,97 rapid,139 rapid,359 amplification rapid,36 amsterdam genscan,201 an PhyloCSF_smooth,143 PhyloCSF_smooth,221 PhyloCSF_smooth,405 PhyloCSFpower,158 PhyloCSFpower,236 PhyloCSFpower,420 Starr_Bloom_bind,86 abEscape,693 abEscape,736 addgene,204 bloomEscMabAvg,697 bloomEscMabAvg,740 bloomEscMax,703 bloomEscMax,746 bloomEscSerumAvg,698 bloomEscSerumAvg,741 bloomEscTop,701 bloomEscTop,744 cas13Crispr,40 cpgIslandExt,66 cpgIslandExtUnmasked,69 cpgIslandSuper,66 escape,700 escape,743 gc5BaseBw,65 gordon2,168 icshape,141 mccoy,693 mccoy,736 multiz7way,691 nextstrainClade,158 nextstrainFreq,54 nextstrainFreq,150 nextstrainFreq,230 nextstrainGene,108 nextstrainParsimony,71 nextstrainParsimony,307 nextstrainSamples,626 nextstrainSamples,638 nextstrainSamples,642 phyloGenes,290 poranHla1,96 poranHla1,109 poranHla2,96 poranHla2,109 potPathoIndel,106 potPathoIndel,151 problematicSites,185 rappuoli,700 rappuoli,743 resistPred,109 rosettaMhc,85 rosettaMhc,115 sarsCov2Phylo,691 sarsCov2PhyloPub,798 strainCons119way,1040 strainCons44way,988 treangen,272 variantMuts,1305 analyses Q0_tracks,804 Q1_tracks,806 Q2_tracks,806 Q3_tracks,806 galaxyEna,806 galaxyEnaQ0Ba-1,802 galaxyEnaQ0Ba-1-1,802 galaxyEnaQ0Ba-1-1-11,802 galaxyEnaQ0Ba-1-17,802 galaxyEnaQ0Ba-2,802 galaxyEnaQ1Ay-4,802 galaxyEnaQ1Ay-4-2,802 galaxyEnaQ1Ay-4-2-2,802 galaxyEnaQ1Ay-43,802 galaxyEnaQ1Ba-1-17,802 galaxyEnaQ2Ay-120,802 galaxyEnaQ2Ay-122,802 galaxyEnaQ2Ay-4,802 galaxyEnaQ2Ay-5,802 galaxyEnaQ2Ay-6,802 galaxyEnaQ3Ay-4,802 galaxyEnaQ3Ay-5,802 galaxyEnaQ3Ay-9,802 galaxyEnaQ3B-1-1-7,802 galaxyEnaQ3B-1-617-2,802 pond,69 analysis IgG_Z-score-_COVID-19_patients,306 IgM_Z-score-_COVID-19_patients,306 Q0_tracks,26 Q0_tracks,86 Q0_tracks,180 Q0_tracks,842 Q0_tracks,922 Q0_tracks,978 Q0_tracks,1001 Q0_tracks,1107 Q0_tracks,1158 Q1_tracks,28 Q1_tracks,88 Q1_tracks,182 Q1_tracks,844 Q1_tracks,924 Q1_tracks,980 Q1_tracks,1003 Q1_tracks,1109 Q1_tracks,1160 Q2_tracks,28 Q2_tracks,88 Q2_tracks,182 Q2_tracks,844 Q2_tracks,924 Q2_tracks,980 Q2_tracks,1003 Q2_tracks,1109 Q2_tracks,1160 Q3_tracks,28 Q3_tracks,88 Q3_tracks,182 Q3_tracks,844 Q3_tracks,924 Q3_tracks,980 Q3_tracks,1003 Q3_tracks,1109 Q3_tracks,1160 abEscape,808 addgene,42 artic,89 articV4,89 articV4_1,102 bloomEscMabAvg,812 bloomEscMax,818 bloomEscSerumAvg,813 bloomEscTop,816 bpmIggCovidSum,315 bpmIgmCovidSum,315 cas13Crispr,374 contacts,302 epitopes,219 escape,815 galaxyEna,28 galaxyEna,88 galaxyEna,182 galaxyEna,844 galaxyEna,924 galaxyEna,980 galaxyEna,1003 galaxyEna,1109 galaxyEna,1160 galaxyEnaQ0Ba-1,24 galaxyEnaQ0Ba-1,84 galaxyEnaQ0Ba-1,178 galaxyEnaQ0Ba-1,840 galaxyEnaQ0Ba-1,920 galaxyEnaQ0Ba-1,976 galaxyEnaQ0Ba-1,999 galaxyEnaQ0Ba-1,1105 galaxyEnaQ0Ba-1,1156 galaxyEnaQ0Ba-1-1,24 galaxyEnaQ0Ba-1-1,84 galaxyEnaQ0Ba-1-1,178 galaxyEnaQ0Ba-1-1,840 galaxyEnaQ0Ba-1-1,920 galaxyEnaQ0Ba-1-1,976 galaxyEnaQ0Ba-1-1,999 galaxyEnaQ0Ba-1-1,1105 galaxyEnaQ0Ba-1-1,1156 galaxyEnaQ0Ba-1-1-11,24 galaxyEnaQ0Ba-1-1-11,84 galaxyEnaQ0Ba-1-1-11,178 galaxyEnaQ0Ba-1-1-11,840 galaxyEnaQ0Ba-1-1-11,920 galaxyEnaQ0Ba-1-1-11,976 galaxyEnaQ0Ba-1-1-11,999 galaxyEnaQ0Ba-1-1-11,1105 galaxyEnaQ0Ba-1-1-11,1156 galaxyEnaQ0Ba-1-17,24 galaxyEnaQ0Ba-1-17,84 galaxyEnaQ0Ba-1-17,178 galaxyEnaQ0Ba-1-17,840 galaxyEnaQ0Ba-1-17,920 galaxyEnaQ0Ba-1-17,976 galaxyEnaQ0Ba-1-17,999 galaxyEnaQ0Ba-1-17,1105 galaxyEnaQ0Ba-1-17,1156 galaxyEnaQ0Ba-2,24 galaxyEnaQ0Ba-2,84 galaxyEnaQ0Ba-2,178 galaxyEnaQ0Ba-2,840 galaxyEnaQ0Ba-2,920 galaxyEnaQ0Ba-2,976 galaxyEnaQ0Ba-2,999 galaxyEnaQ0Ba-2,1105 galaxyEnaQ0Ba-2,1156 galaxyEnaQ1Ay-4,24 galaxyEnaQ1Ay-4,84 galaxyEnaQ1Ay-4,178 galaxyEnaQ1Ay-4,840 galaxyEnaQ1Ay-4,920 galaxyEnaQ1Ay-4,976 galaxyEnaQ1Ay-4,999 galaxyEnaQ1Ay-4,1105 galaxyEnaQ1Ay-4,1156 galaxyEnaQ1Ay-4-2,24 galaxyEnaQ1Ay-4-2,84 galaxyEnaQ1Ay-4-2,178 galaxyEnaQ1Ay-4-2,840 galaxyEnaQ1Ay-4-2,920 galaxyEnaQ1Ay-4-2,976 galaxyEnaQ1Ay-4-2,999 galaxyEnaQ1Ay-4-2,1105 galaxyEnaQ1Ay-4-2,1156 galaxyEnaQ1Ay-4-2-2,24 galaxyEnaQ1Ay-4-2-2,84 galaxyEnaQ1Ay-4-2-2,178 galaxyEnaQ1Ay-4-2-2,840 galaxyEnaQ1Ay-4-2-2,920 galaxyEnaQ1Ay-4-2-2,976 galaxyEnaQ1Ay-4-2-2,999 galaxyEnaQ1Ay-4-2-2,1105 galaxyEnaQ1Ay-4-2-2,1156 galaxyEnaQ1Ay-43,24 galaxyEnaQ1Ay-43,84 galaxyEnaQ1Ay-43,178 galaxyEnaQ1Ay-43,840 galaxyEnaQ1Ay-43,920 galaxyEnaQ1Ay-43,976 galaxyEnaQ1Ay-43,999 galaxyEnaQ1Ay-43,1105 galaxyEnaQ1Ay-43,1156 galaxyEnaQ1Ba-1-17,24 galaxyEnaQ1Ba-1-17,84 galaxyEnaQ1Ba-1-17,178 galaxyEnaQ1Ba-1-17,840 galaxyEnaQ1Ba-1-17,920 galaxyEnaQ1Ba-1-17,976 galaxyEnaQ1Ba-1-17,999 galaxyEnaQ1Ba-1-17,1105 galaxyEnaQ1Ba-1-17,1156 galaxyEnaQ2Ay-120,24 galaxyEnaQ2Ay-120,84 galaxyEnaQ2Ay-120,178 galaxyEnaQ2Ay-120,840 galaxyEnaQ2Ay-120,920 galaxyEnaQ2Ay-120,976 galaxyEnaQ2Ay-120,999 galaxyEnaQ2Ay-120,1105 galaxyEnaQ2Ay-120,1156 galaxyEnaQ2Ay-122,24 galaxyEnaQ2Ay-122,84 galaxyEnaQ2Ay-122,178 galaxyEnaQ2Ay-122,840 galaxyEnaQ2Ay-122,920 galaxyEnaQ2Ay-122,976 galaxyEnaQ2Ay-122,999 galaxyEnaQ2Ay-122,1105 galaxyEnaQ2Ay-122,1156 galaxyEnaQ2Ay-4,24 galaxyEnaQ2Ay-4,84 galaxyEnaQ2Ay-4,178 galaxyEnaQ2Ay-4,840 galaxyEnaQ2Ay-4,920 galaxyEnaQ2Ay-4,976 galaxyEnaQ2Ay-4,999 galaxyEnaQ2Ay-4,1105 galaxyEnaQ2Ay-4,1156 galaxyEnaQ2Ay-5,24 galaxyEnaQ2Ay-5,84 galaxyEnaQ2Ay-5,178 galaxyEnaQ2Ay-5,840 galaxyEnaQ2Ay-5,920 galaxyEnaQ2Ay-5,976 galaxyEnaQ2Ay-5,999 galaxyEnaQ2Ay-5,1105 galaxyEnaQ2Ay-5,1156 galaxyEnaQ2Ay-6,24 galaxyEnaQ2Ay-6,84 galaxyEnaQ2Ay-6,178 galaxyEnaQ2Ay-6,840 galaxyEnaQ2Ay-6,920 galaxyEnaQ2Ay-6,976 galaxyEnaQ2Ay-6,999 galaxyEnaQ2Ay-6,1105 galaxyEnaQ2Ay-6,1156 galaxyEnaQ3Ay-4,24 galaxyEnaQ3Ay-4,84 galaxyEnaQ3Ay-4,178 galaxyEnaQ3Ay-4,840 galaxyEnaQ3Ay-4,920 galaxyEnaQ3Ay-4,976 galaxyEnaQ3Ay-4,999 galaxyEnaQ3Ay-4,1105 galaxyEnaQ3Ay-4,1156 galaxyEnaQ3Ay-5,24 galaxyEnaQ3Ay-5,84 galaxyEnaQ3Ay-5,178 galaxyEnaQ3Ay-5,840 galaxyEnaQ3Ay-5,920 galaxyEnaQ3Ay-5,976 galaxyEnaQ3Ay-5,999 galaxyEnaQ3Ay-5,1105 galaxyEnaQ3Ay-5,1156 galaxyEnaQ3Ay-9,24 galaxyEnaQ3Ay-9,84 galaxyEnaQ3Ay-9,178 galaxyEnaQ3Ay-9,840 galaxyEnaQ3Ay-9,920 galaxyEnaQ3Ay-9,976 galaxyEnaQ3Ay-9,999 galaxyEnaQ3Ay-9,1105 galaxyEnaQ3Ay-9,1156 galaxyEnaQ3B-1-1-7,24 galaxyEnaQ3B-1-1-7,84 galaxyEnaQ3B-1-1-7,178 galaxyEnaQ3B-1-1-7,840 galaxyEnaQ3B-1-1-7,920 galaxyEnaQ3B-1-1-7,976 galaxyEnaQ3B-1-1-7,999 galaxyEnaQ3B-1-1-7,1105 galaxyEnaQ3B-1-1-7,1156 galaxyEnaQ3B-1-617-2,24 galaxyEnaQ3B-1-617-2,84 galaxyEnaQ3B-1-617-2,178 galaxyEnaQ3B-1-617-2,840 galaxyEnaQ3B-1-617-2,920 galaxyEnaQ3B-1-617-2,976 galaxyEnaQ3B-1-617-2,999 galaxyEnaQ3B-1-617-2,1105 galaxyEnaQ3B-1-617-2,1156 kimRnaMod,136 kimTranscripts,353 mccoy,808 ncbiGeneBGP,58 ncbiProducts,74 nextstrainClade,225 nextstrainFreq,280 nextstrainFreq,358 nextstrainFreq,421 nextstrainGene,174 nextstrainParsimony,437 nextstrainSamples,914 nextstrainSamples,932 nextstrainSamples,1041 pbm,315 pbmShanghai,432 phyloGenes,350 pond,6 pond,235 pond,245 pond,275 poranHla1,163 poranHla2,163 primers,251 problematicSites,12 problematicSites,72 problematicSites,84 problematicSites,100 problematicSites,139 problematicSites,150 problematicSites,155 problematicSites,576 problematicSitesCaution,9 problematicSitesMask,9 pyle,50 rapid,243 rappuoli,815 resist,102 resistPred,194 sarsCov2Phylo,882 sarsCov2Phylo,1087 sarsCov2PhyloPub,988 sarsCov2PhyloPub,1207 spikeMuts,311 swift,82 swift,172 transcriptome,221 transcriptome,359 unipCov2AliSwissprot,279 unipCov2Chain,509 unipCov2DisulfBond,505 unipCov2Domain,504 unipCov2Interest,185 unipCov2LocCytopl,504 unipCov2LocExtra,504 unipCov2LocSignal,505 unipCov2LocTransMemb,505 unipCov2Modif,508 unipCov2Mut,505 unipCov2Other,505 unipCov2Repeat,503 unipCov2Struct,507 varskip,95 analytics Q0_tracks,1288 Q1_tracks,1290 Q2_tracks,1290 Q3_tracks,1290 galaxyEna,1290 galaxyEnaQ0Ba-1,1286 galaxyEnaQ0Ba-1-1,1286 galaxyEnaQ0Ba-1-1-11,1286 galaxyEnaQ0Ba-1-17,1286 galaxyEnaQ0Ba-2,1286 galaxyEnaQ1Ay-4,1286 galaxyEnaQ1Ay-4-2,1286 galaxyEnaQ1Ay-4-2-2,1286 galaxyEnaQ1Ay-43,1286 galaxyEnaQ1Ba-1-17,1286 galaxyEnaQ2Ay-120,1286 galaxyEnaQ2Ay-122,1286 galaxyEnaQ2Ay-4,1286 galaxyEnaQ2Ay-5,1286 galaxyEnaQ2Ay-6,1286 galaxyEnaQ3Ay-4,1286 galaxyEnaQ3Ay-5,1286 galaxyEnaQ3Ay-9,1286 galaxyEnaQ3B-1-1-7,1286 galaxyEnaQ3B-1-617-2,1286 analyze simpleRepeat,82 analyzed Q0_tracks,346 Q0_tracks,1017 Q0_tracks,1045 Q0_tracks,1055 Q1_tracks,348 Q1_tracks,1019 Q1_tracks,1047 Q1_tracks,1057 Q2_tracks,348 Q2_tracks,1019 Q2_tracks,1047 Q2_tracks,1057 Q3_tracks,348 Q3_tracks,1019 Q3_tracks,1047 Q3_tracks,1057 galaxyEna,348 galaxyEna,1019 galaxyEna,1047 galaxyEna,1057 galaxyEnaQ0Ba-1,344 galaxyEnaQ0Ba-1,1015 galaxyEnaQ0Ba-1,1043 galaxyEnaQ0Ba-1,1053 galaxyEnaQ0Ba-1-1,344 galaxyEnaQ0Ba-1-1,1015 galaxyEnaQ0Ba-1-1,1043 galaxyEnaQ0Ba-1-1,1053 galaxyEnaQ0Ba-1-1-11,344 galaxyEnaQ0Ba-1-1-11,1015 galaxyEnaQ0Ba-1-1-11,1043 galaxyEnaQ0Ba-1-1-11,1053 galaxyEnaQ0Ba-1-17,344 galaxyEnaQ0Ba-1-17,1015 galaxyEnaQ0Ba-1-17,1043 galaxyEnaQ0Ba-1-17,1053 galaxyEnaQ0Ba-2,344 galaxyEnaQ0Ba-2,1015 galaxyEnaQ0Ba-2,1043 galaxyEnaQ0Ba-2,1053 galaxyEnaQ1Ay-4,344 galaxyEnaQ1Ay-4,1015 galaxyEnaQ1Ay-4,1043 galaxyEnaQ1Ay-4,1053 galaxyEnaQ1Ay-4-2,344 galaxyEnaQ1Ay-4-2,1015 galaxyEnaQ1Ay-4-2,1043 galaxyEnaQ1Ay-4-2,1053 galaxyEnaQ1Ay-4-2-2,344 galaxyEnaQ1Ay-4-2-2,1015 galaxyEnaQ1Ay-4-2-2,1043 galaxyEnaQ1Ay-4-2-2,1053 galaxyEnaQ1Ay-43,344 galaxyEnaQ1Ay-43,1015 galaxyEnaQ1Ay-43,1043 galaxyEnaQ1Ay-43,1053 galaxyEnaQ1Ba-1-17,344 galaxyEnaQ1Ba-1-17,1015 galaxyEnaQ1Ba-1-17,1043 galaxyEnaQ1Ba-1-17,1053 galaxyEnaQ2Ay-120,344 galaxyEnaQ2Ay-120,1015 galaxyEnaQ2Ay-120,1043 galaxyEnaQ2Ay-120,1053 galaxyEnaQ2Ay-122,344 galaxyEnaQ2Ay-122,1015 galaxyEnaQ2Ay-122,1043 galaxyEnaQ2Ay-122,1053 galaxyEnaQ2Ay-4,344 galaxyEnaQ2Ay-4,1015 galaxyEnaQ2Ay-4,1043 galaxyEnaQ2Ay-4,1053 galaxyEnaQ2Ay-5,344 galaxyEnaQ2Ay-5,1015 galaxyEnaQ2Ay-5,1043 galaxyEnaQ2Ay-5,1053 galaxyEnaQ2Ay-6,344 galaxyEnaQ2Ay-6,1015 galaxyEnaQ2Ay-6,1043 galaxyEnaQ2Ay-6,1053 galaxyEnaQ3Ay-4,344 galaxyEnaQ3Ay-4,1015 galaxyEnaQ3Ay-4,1043 galaxyEnaQ3Ay-4,1053 galaxyEnaQ3Ay-5,344 galaxyEnaQ3Ay-5,1015 galaxyEnaQ3Ay-5,1043 galaxyEnaQ3Ay-5,1053 galaxyEnaQ3Ay-9,344 galaxyEnaQ3Ay-9,1015 galaxyEnaQ3Ay-9,1043 galaxyEnaQ3Ay-9,1053 galaxyEnaQ3B-1-1-7,344 galaxyEnaQ3B-1-1-7,1015 galaxyEnaQ3B-1-1-7,1043 galaxyEnaQ3B-1-1-7,1053 galaxyEnaQ3B-1-617-2,344 galaxyEnaQ3B-1-617-2,1015 galaxyEnaQ3B-1-617-2,1043 galaxyEnaQ3B-1-617-2,1053 and CHX_24hr_1,10 CHX_24hr_2,10 CHX_5hr_1,10 CHX_5hr_2,10 CHX_7hr_1,10 CHX_7hr_2,10 Calu3_07hpi,6 Calu3_07hpi,9 Calu3_07hpi,28 Calu3_07hpi,54 Calu3_07hpi,105 Calu3_07hpi,108 Calu3_07hpi,180 Calu3_07hpi,215 Calu3_07hpi,226 Calu3_07hpi,245 Calu3_07hpi,255 Calu3_07hpi,283 Entropy,16 Harr_24hr_1,10 Harr_24hr_2,10 Harr_5hr_1,10 Harr_5hr_2,10 Harr_7hr_1,10 Harr_7hr_2,10 IgG_Z-score-_COVID-19_patients,40 IgG_Z-score-_COVID-19_patients,53 IgG_Z-score-_COVID-19_patients,78 IgG_Z-score-_COVID-19_patients,102 IgG_Z-score-_COVID-19_patients,159 IgG_Z-score-_COVID-19_patients,212 IgG_Z-score-_COVID-19_patients,250 IgG_Z-score-_COVID-19_patients,424 IgM_Z-score-_COVID-19_patients,40 IgM_Z-score-_COVID-19_patients,53 IgM_Z-score-_COVID-19_patients,78 IgM_Z-score-_COVID-19_patients,102 IgM_Z-score-_COVID-19_patients,159 IgM_Z-score-_COVID-19_patients,212 IgM_Z-score-_COVID-19_patients,250 IgM_Z-score-_COVID-19_patients,424 Kim_RNAs,15 Kim_TRS_sgmRNAs,18 Kim_non-TRS_sgmRNAs,18 LTM_24hr_1,10 LTM_24hr_2,10 LTM_5hr_1,10 LTM_5hr_2,10 LTM_7hr_1,10 LTM_7hr_2,10 Negative_Selection,17 ORFs,7 ORFs,26 ORFs,52 ORFs,103 ORFs,106 ORFs,178 ORFs,213 ORFs,224 ORFs,243 ORFs,253 ORFs,281 PhyloCSF_smooth,46 PhyloCSF_smooth,51 PhyloCSF_smooth,58 PhyloCSF_smooth,101 PhyloCSF_smooth,374 PhyloCSF_smooth,446 PhyloCSF_smooth,469 PhyloCSF_smooth,490 PhyloCSF_smooth,565 PhyloCSF_smooth,614 PhyloCSF_smooth,618 PhyloCSF_smooth,621 PhyloCSF_smooth,671 PhyloCSF_smooth,697 PhyloCSF_smooth,718 PhyloCSF_smooth,760 PhyloCSF_smooth,795 PhyloCSFgenes,9 PhyloCSFpower,61 PhyloCSFpower,66 PhyloCSFpower,73 PhyloCSFpower,116 PhyloCSFpower,390 PhyloCSFpower,461 PhyloCSFpower,484 PhyloCSFpower,505 PhyloCSFpower,580 PhyloCSFpower,625 PhyloCSFpower,629 PhyloCSFpower,632 PhyloCSFpower,664 PhyloCSFpower,676 PhyloCSFpower,688 PhyloCSFpower,739 PhyloCSFpower,760 PhyloCSFpower,772 PhyloCSFrejected,11 Positive_Selection,17 Q0_tracks,16 Q0_tracks,38 Q0_tracks,87 Q0_tracks,105 Q0_tracks,115 Q0_tracks,177 Q0_tracks,200 Q0_tracks,202 Q0_tracks,212 Q0_tracks,216 Q0_tracks,222 Q0_tracks,228 Q0_tracks,244 Q0_tracks,249 Q0_tracks,272 Q0_tracks,394 Q0_tracks,401 Q0_tracks,486 Q0_tracks,563 Q0_tracks,579 Q0_tracks,586 Q0_tracks,609 Q0_tracks,693 Q0_tracks,867 Q0_tracks,869 Q0_tracks,896 Q0_tracks,900 Q0_tracks,953 Q0_tracks,1018 Q0_tracks,1102 Q0_tracks,1125 Q0_tracks,1130 Q0_tracks,1135 Q0_tracks,1159 Q0_tracks,1196 Q0_tracks,1276 Q0_tracks,1286 Q1_tracks,18 Q1_tracks,40 Q1_tracks,89 Q1_tracks,107 Q1_tracks,117 Q1_tracks,179 Q1_tracks,202 Q1_tracks,204 Q1_tracks,214 Q1_tracks,218 Q1_tracks,224 Q1_tracks,230 Q1_tracks,246 Q1_tracks,251 Q1_tracks,274 Q1_tracks,396 Q1_tracks,403 Q1_tracks,488 Q1_tracks,565 Q1_tracks,581 Q1_tracks,588 Q1_tracks,611 Q1_tracks,695 Q1_tracks,869 Q1_tracks,871 Q1_tracks,898 Q1_tracks,902 Q1_tracks,955 Q1_tracks,1020 Q1_tracks,1104 Q1_tracks,1127 Q1_tracks,1132 Q1_tracks,1137 Q1_tracks,1161 Q1_tracks,1198 Q1_tracks,1278 Q1_tracks,1288 Q2_tracks,18 Q2_tracks,40 Q2_tracks,89 Q2_tracks,107 Q2_tracks,117 Q2_tracks,179 Q2_tracks,202 Q2_tracks,204 Q2_tracks,214 Q2_tracks,218 Q2_tracks,224 Q2_tracks,230 Q2_tracks,246 Q2_tracks,251 Q2_tracks,274 Q2_tracks,396 Q2_tracks,403 Q2_tracks,488 Q2_tracks,565 Q2_tracks,581 Q2_tracks,588 Q2_tracks,611 Q2_tracks,695 Q2_tracks,869 Q2_tracks,871 Q2_tracks,898 Q2_tracks,902 Q2_tracks,955 Q2_tracks,1020 Q2_tracks,1104 Q2_tracks,1127 Q2_tracks,1132 Q2_tracks,1137 Q2_tracks,1161 Q2_tracks,1198 Q2_tracks,1278 Q2_tracks,1288 Q3_tracks,18 Q3_tracks,40 Q3_tracks,89 Q3_tracks,107 Q3_tracks,117 Q3_tracks,179 Q3_tracks,202 Q3_tracks,204 Q3_tracks,214 Q3_tracks,218 Q3_tracks,224 Q3_tracks,230 Q3_tracks,246 Q3_tracks,251 Q3_tracks,274 Q3_tracks,396 Q3_tracks,403 Q3_tracks,488 Q3_tracks,565 Q3_tracks,581 Q3_tracks,588 Q3_tracks,611 Q3_tracks,695 Q3_tracks,869 Q3_tracks,871 Q3_tracks,898 Q3_tracks,902 Q3_tracks,955 Q3_tracks,1020 Q3_tracks,1104 Q3_tracks,1127 Q3_tracks,1132 Q3_tracks,1137 Q3_tracks,1161 Q3_tracks,1198 Q3_tracks,1278 Q3_tracks,1288 SHAPE,12 Starr_Bloom,74 Starr_Bloom,178 Starr_Bloom,272 Starr_Bloom_bind,68 Starr_Bloom_bind,172 Starr_Bloom_bind,266 TRS_sites,12 Vero6_05hpi,6 Vero6_05hpi,9 Vero6_05hpi,28 Vero6_05hpi,54 Vero6_05hpi,105 Vero6_05hpi,108 Vero6_05hpi,180 Vero6_05hpi,215 Vero6_05hpi,226 Vero6_05hpi,245 Vero6_05hpi,255 Vero6_05hpi,283 Vero6_24hpi,6 Vero6_24hpi,9 Vero6_24hpi,28 Vero6_24hpi,54 Vero6_24hpi,105 Vero6_24hpi,108 Vero6_24hpi,180 Vero6_24hpi,215 Vero6_24hpi,226 Vero6_24hpi,245 Vero6_24hpi,255 Vero6_24hpi,283 abEscape,11 abEscape,221 abEscape,245 abEscape,270 abEscape,304 abEscape,333 abEscape,465 abEscape,486 abEscape,496 abEscape,508 abEscape,511 abEscape,578 abEscape,593 abEscape,609 abEscape,617 abEscape,632 abEscape,819 addgene,11 addgene,35 addgene,53 addgene,89 addgene,108 addgene,139 addgene,155 addgene,163 addgene,180 addgene,220 addgene,242 artic,11 artic,30 artic,60 articV4,11 articV4,33 articV4,60 articV4_1,11 articV4_1,44 articV4_1,71 augustusGene,9 augustusGene,60 augustusGene,74 augustusGene,87 augustusGene,206 augustusGene,271 augustusGene,277 augustusGene,296 augustusGene,327 bloomEscMabAvg,225 bloomEscMabAvg,249 bloomEscMabAvg,274 bloomEscMabAvg,308 bloomEscMabAvg,337 bloomEscMabAvg,469 bloomEscMabAvg,490 bloomEscMabAvg,500 bloomEscMabAvg,512 bloomEscMabAvg,515 bloomEscMabAvg,582 bloomEscMabAvg,597 bloomEscMabAvg,613 bloomEscMabAvg,621 bloomEscMabAvg,636 bloomEscMabAvg,823 bloomEscMax,18 bloomEscMax,231 bloomEscMax,255 bloomEscMax,280 bloomEscMax,314 bloomEscMax,343 bloomEscMax,475 bloomEscMax,496 bloomEscMax,506 bloomEscMax,518 bloomEscMax,521 bloomEscMax,588 bloomEscMax,603 bloomEscMax,619 bloomEscMax,627 bloomEscMax,642 bloomEscMax,829 bloomEscSerumAvg,226 bloomEscSerumAvg,250 bloomEscSerumAvg,275 bloomEscSerumAvg,309 bloomEscSerumAvg,338 bloomEscSerumAvg,470 bloomEscSerumAvg,491 bloomEscSerumAvg,501 bloomEscSerumAvg,513 bloomEscSerumAvg,516 bloomEscSerumAvg,583 bloomEscSerumAvg,598 bloomEscSerumAvg,614 bloomEscSerumAvg,622 bloomEscSerumAvg,637 bloomEscSerumAvg,824 bloomEscTop,229 bloomEscTop,253 bloomEscTop,278 bloomEscTop,312 bloomEscTop,341 bloomEscTop,473 bloomEscTop,494 bloomEscTop,504 bloomEscTop,516 bloomEscTop,519 bloomEscTop,586 bloomEscTop,601 bloomEscTop,617 bloomEscTop,625 bloomEscTop,640 bloomEscTop,827 bloomEscTotal,18 bpmIggCovidSum,49 bpmIggCovidSum,62 bpmIggCovidSum,87 bpmIggCovidSum,111 bpmIggCovidSum,168 bpmIggCovidSum,221 bpmIggCovidSum,259 bpmIggCovidSum,433 bpmIgmCovidSum,49 bpmIgmCovidSum,62 bpmIgmCovidSum,87 bpmIgmCovidSum,111 bpmIgmCovidSum,168 bpmIgmCovidSum,221 bpmIgmCovidSum,259 bpmIgmCovidSum,433 cas13Crispr,7 cas13Crispr,99 cas13Crispr,206 cas13Crispr,267 cas13Crispr,290 cas13Crispr,336 cas13Crispr,479 cas13Crispr,519 cd8escape,23 cd8escape,64 cd8escape,98 cd8escape,110 cd8escape,128 cd8escape,161 contacts,14 contacts,39 contacts,137 contacts,159 contacts,206 contacts,247 cpgIslandExt,12 cpgIslandExt,35 cpgIslandExt,183 cpgIslandExt,244 cpgIslandExt,248 cpgIslandExt,295 cpgIslandExt,508 cpgIslandExt,599 cpgIslandExtUnmasked,15 cpgIslandExtUnmasked,38 cpgIslandExtUnmasked,186 cpgIslandExtUnmasked,247 cpgIslandExtUnmasked,251 cpgIslandExtUnmasked,298 cpgIslandExtUnmasked,511 cpgIslandExtUnmasked,602 cpgIslandSuper,12 cpgIslandSuper,35 cpgIslandSuper,183 cpgIslandSuper,244 cpgIslandSuper,248 cpgIslandSuper,295 cpgIslandSuper,508 cpgIslandSuper,599 crisprDet,7 crisprDet,19 crisprDet,86 crisprDet,112 cytoBandIdeo,8 epitopes,25 epitopes,81 epitopes,149 epitopes,161 epitopes,165 epitopes,175 epitopes,188 epitopes,192 epitopes,196 epitopes,218 epitopes,240 epitopes,272 epitopes,341 escape,228 escape,252 escape,277 escape,311 escape,340 escape,472 escape,493 escape,503 escape,515 escape,518 escape,585 escape,600 escape,616 escape,624 escape,639 escape,826 galaxyEna,18 galaxyEna,40 galaxyEna,89 galaxyEna,107 galaxyEna,117 galaxyEna,179 galaxyEna,202 galaxyEna,204 galaxyEna,214 galaxyEna,218 galaxyEna,224 galaxyEna,230 galaxyEna,246 galaxyEna,251 galaxyEna,274 galaxyEna,396 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galaxyEnaQ2Ay-5,1274 galaxyEnaQ2Ay-5,1284 galaxyEnaQ2Ay-6,11 galaxyEnaQ2Ay-6,14 galaxyEnaQ2Ay-6,36 galaxyEnaQ2Ay-6,85 galaxyEnaQ2Ay-6,103 galaxyEnaQ2Ay-6,113 galaxyEnaQ2Ay-6,175 galaxyEnaQ2Ay-6,198 galaxyEnaQ2Ay-6,200 galaxyEnaQ2Ay-6,210 galaxyEnaQ2Ay-6,214 galaxyEnaQ2Ay-6,220 galaxyEnaQ2Ay-6,226 galaxyEnaQ2Ay-6,242 galaxyEnaQ2Ay-6,247 galaxyEnaQ2Ay-6,270 galaxyEnaQ2Ay-6,392 galaxyEnaQ2Ay-6,399 galaxyEnaQ2Ay-6,484 galaxyEnaQ2Ay-6,561 galaxyEnaQ2Ay-6,577 galaxyEnaQ2Ay-6,584 galaxyEnaQ2Ay-6,607 galaxyEnaQ2Ay-6,691 galaxyEnaQ2Ay-6,865 galaxyEnaQ2Ay-6,867 galaxyEnaQ2Ay-6,894 galaxyEnaQ2Ay-6,898 galaxyEnaQ2Ay-6,951 galaxyEnaQ2Ay-6,1016 galaxyEnaQ2Ay-6,1100 galaxyEnaQ2Ay-6,1123 galaxyEnaQ2Ay-6,1128 galaxyEnaQ2Ay-6,1133 galaxyEnaQ2Ay-6,1157 galaxyEnaQ2Ay-6,1194 galaxyEnaQ2Ay-6,1274 galaxyEnaQ2Ay-6,1284 galaxyEnaQ3Ay-4,11 galaxyEnaQ3Ay-4,14 galaxyEnaQ3Ay-4,36 galaxyEnaQ3Ay-4,85 galaxyEnaQ3Ay-4,103 galaxyEnaQ3Ay-4,113 galaxyEnaQ3Ay-4,175 galaxyEnaQ3Ay-4,198 galaxyEnaQ3Ay-4,200 galaxyEnaQ3Ay-4,210 galaxyEnaQ3Ay-4,214 galaxyEnaQ3Ay-4,220 galaxyEnaQ3Ay-4,226 galaxyEnaQ3Ay-4,242 galaxyEnaQ3Ay-4,247 galaxyEnaQ3Ay-4,270 galaxyEnaQ3Ay-4,392 galaxyEnaQ3Ay-4,399 galaxyEnaQ3Ay-4,484 galaxyEnaQ3Ay-4,561 galaxyEnaQ3Ay-4,577 galaxyEnaQ3Ay-4,584 galaxyEnaQ3Ay-4,607 galaxyEnaQ3Ay-4,691 galaxyEnaQ3Ay-4,865 galaxyEnaQ3Ay-4,867 galaxyEnaQ3Ay-4,894 galaxyEnaQ3Ay-4,898 galaxyEnaQ3Ay-4,951 galaxyEnaQ3Ay-4,1016 galaxyEnaQ3Ay-4,1100 galaxyEnaQ3Ay-4,1123 galaxyEnaQ3Ay-4,1128 galaxyEnaQ3Ay-4,1133 galaxyEnaQ3Ay-4,1157 galaxyEnaQ3Ay-4,1194 galaxyEnaQ3Ay-4,1274 galaxyEnaQ3Ay-4,1284 galaxyEnaQ3Ay-5,11 galaxyEnaQ3Ay-5,14 galaxyEnaQ3Ay-5,36 galaxyEnaQ3Ay-5,85 galaxyEnaQ3Ay-5,103 galaxyEnaQ3Ay-5,113 galaxyEnaQ3Ay-5,175 galaxyEnaQ3Ay-5,198 galaxyEnaQ3Ay-5,200 galaxyEnaQ3Ay-5,210 galaxyEnaQ3Ay-5,214 galaxyEnaQ3Ay-5,220 galaxyEnaQ3Ay-5,226 galaxyEnaQ3Ay-5,242 galaxyEnaQ3Ay-5,247 galaxyEnaQ3Ay-5,270 galaxyEnaQ3Ay-5,392 galaxyEnaQ3Ay-5,399 galaxyEnaQ3Ay-5,484 galaxyEnaQ3Ay-5,561 galaxyEnaQ3Ay-5,577 galaxyEnaQ3Ay-5,584 galaxyEnaQ3Ay-5,607 galaxyEnaQ3Ay-5,691 galaxyEnaQ3Ay-5,865 galaxyEnaQ3Ay-5,867 galaxyEnaQ3Ay-5,894 galaxyEnaQ3Ay-5,898 galaxyEnaQ3Ay-5,951 galaxyEnaQ3Ay-5,1016 galaxyEnaQ3Ay-5,1100 galaxyEnaQ3Ay-5,1123 galaxyEnaQ3Ay-5,1128 galaxyEnaQ3Ay-5,1133 galaxyEnaQ3Ay-5,1157 galaxyEnaQ3Ay-5,1194 galaxyEnaQ3Ay-5,1274 galaxyEnaQ3Ay-5,1284 galaxyEnaQ3Ay-9,11 galaxyEnaQ3Ay-9,14 galaxyEnaQ3Ay-9,36 galaxyEnaQ3Ay-9,85 galaxyEnaQ3Ay-9,103 galaxyEnaQ3Ay-9,113 galaxyEnaQ3Ay-9,175 galaxyEnaQ3Ay-9,198 galaxyEnaQ3Ay-9,200 galaxyEnaQ3Ay-9,210 galaxyEnaQ3Ay-9,214 galaxyEnaQ3Ay-9,220 galaxyEnaQ3Ay-9,226 galaxyEnaQ3Ay-9,242 galaxyEnaQ3Ay-9,247 galaxyEnaQ3Ay-9,270 galaxyEnaQ3Ay-9,392 galaxyEnaQ3Ay-9,399 galaxyEnaQ3Ay-9,484 galaxyEnaQ3Ay-9,561 galaxyEnaQ3Ay-9,577 galaxyEnaQ3Ay-9,584 galaxyEnaQ3Ay-9,607 galaxyEnaQ3Ay-9,691 galaxyEnaQ3Ay-9,865 galaxyEnaQ3Ay-9,867 galaxyEnaQ3Ay-9,894 galaxyEnaQ3Ay-9,898 galaxyEnaQ3Ay-9,951 galaxyEnaQ3Ay-9,1016 galaxyEnaQ3Ay-9,1100 galaxyEnaQ3Ay-9,1123 galaxyEnaQ3Ay-9,1128 galaxyEnaQ3Ay-9,1133 galaxyEnaQ3Ay-9,1157 galaxyEnaQ3Ay-9,1194 galaxyEnaQ3Ay-9,1274 galaxyEnaQ3Ay-9,1284 galaxyEnaQ3B-1-1-7,11 galaxyEnaQ3B-1-1-7,14 galaxyEnaQ3B-1-1-7,36 galaxyEnaQ3B-1-1-7,85 galaxyEnaQ3B-1-1-7,103 galaxyEnaQ3B-1-1-7,113 galaxyEnaQ3B-1-1-7,175 galaxyEnaQ3B-1-1-7,198 galaxyEnaQ3B-1-1-7,200 galaxyEnaQ3B-1-1-7,210 galaxyEnaQ3B-1-1-7,214 galaxyEnaQ3B-1-1-7,220 galaxyEnaQ3B-1-1-7,226 galaxyEnaQ3B-1-1-7,242 galaxyEnaQ3B-1-1-7,247 galaxyEnaQ3B-1-1-7,270 galaxyEnaQ3B-1-1-7,392 galaxyEnaQ3B-1-1-7,399 galaxyEnaQ3B-1-1-7,484 galaxyEnaQ3B-1-1-7,561 galaxyEnaQ3B-1-1-7,577 galaxyEnaQ3B-1-1-7,584 galaxyEnaQ3B-1-1-7,607 galaxyEnaQ3B-1-1-7,691 galaxyEnaQ3B-1-1-7,865 galaxyEnaQ3B-1-1-7,867 galaxyEnaQ3B-1-1-7,894 galaxyEnaQ3B-1-1-7,898 galaxyEnaQ3B-1-1-7,951 galaxyEnaQ3B-1-1-7,1016 galaxyEnaQ3B-1-1-7,1100 galaxyEnaQ3B-1-1-7,1123 galaxyEnaQ3B-1-1-7,1128 galaxyEnaQ3B-1-1-7,1133 galaxyEnaQ3B-1-1-7,1157 galaxyEnaQ3B-1-1-7,1194 galaxyEnaQ3B-1-1-7,1274 galaxyEnaQ3B-1-1-7,1284 galaxyEnaQ3B-1-617-2,11 galaxyEnaQ3B-1-617-2,14 galaxyEnaQ3B-1-617-2,36 galaxyEnaQ3B-1-617-2,85 galaxyEnaQ3B-1-617-2,103 galaxyEnaQ3B-1-617-2,113 galaxyEnaQ3B-1-617-2,175 galaxyEnaQ3B-1-617-2,198 galaxyEnaQ3B-1-617-2,200 galaxyEnaQ3B-1-617-2,210 galaxyEnaQ3B-1-617-2,214 galaxyEnaQ3B-1-617-2,220 galaxyEnaQ3B-1-617-2,226 galaxyEnaQ3B-1-617-2,242 galaxyEnaQ3B-1-617-2,247 galaxyEnaQ3B-1-617-2,270 galaxyEnaQ3B-1-617-2,392 galaxyEnaQ3B-1-617-2,399 galaxyEnaQ3B-1-617-2,484 galaxyEnaQ3B-1-617-2,561 galaxyEnaQ3B-1-617-2,577 galaxyEnaQ3B-1-617-2,584 galaxyEnaQ3B-1-617-2,607 galaxyEnaQ3B-1-617-2,691 galaxyEnaQ3B-1-617-2,865 galaxyEnaQ3B-1-617-2,867 galaxyEnaQ3B-1-617-2,894 galaxyEnaQ3B-1-617-2,898 galaxyEnaQ3B-1-617-2,951 galaxyEnaQ3B-1-617-2,1016 galaxyEnaQ3B-1-617-2,1100 galaxyEnaQ3B-1-617-2,1123 galaxyEnaQ3B-1-617-2,1128 galaxyEnaQ3B-1-617-2,1133 galaxyEnaQ3B-1-617-2,1157 galaxyEnaQ3B-1-617-2,1194 galaxyEnaQ3B-1-617-2,1274 galaxyEnaQ3B-1-617-2,1284 gap,5 gap,80 gap,102 gc5BaseBw,9 gc5BaseBw,22 gc5BaseBw,74 genscan,7 genscan,30 genscan,40 genscan,46 genscan,63 genscan,83 genscan,97 genscan,108 genscan,119 genscan,138 genscan,147 gold,6 gold,91 gold,105 gold,111 gordon2,12 gordon2,33 gordon2,40 gordon2,54 gordon2,78 gordon2,83 gordon2,97 gordon2,124 gordon2,167 gordon2,198 gordon2,241 gordon2,265 icshape,8 icshape,21 icshape,35 icshape,46 icshape,61 icshape,78 icshapeInvitro,6 icshapeInvivo,6 iedb,30 iedb,91 kimIvtCov,15 kimIvtCov,36 kimIvtCov,88 kimMgiNc5p,12 kimNp,12 kimNp,15 kimNp,32 kimNp,45 kimNp,70 kimNp,74 kimNp,112 kimNp5pBreak,9 kimNpLdr3pBreak,9 kimNpNc3pBrk,9 kimRnaMod,23 kimRnaMod,46 kimRnaMod,237 kimTranscripts,15 kimTranscripts,23 kimTranscripts,37 mRNA-seq_24hr_1,10 mRNA-seq_24hr_2,10 mRNA-seq_5hr_1,10 mRNA-seq_5hr_2,10 mRNA-seq_7hr_1,10 mRNA-seq_7hr_2,10 mRNAs,4 mRNAs,10 mRNAs,13 mccoy,12 mccoy,221 mccoy,245 mccoy,270 mccoy,304 mccoy,333 mccoy,465 mccoy,486 mccoy,496 mccoy,508 mccoy,511 mccoy,578 mccoy,593 mccoy,609 mccoy,617 mccoy,632 mccoy,819 microdel,7 microdel,224 microdel,233 microdel,258 microdel,289 multiz7way,5 multiz7way,46 multiz7way,87 multiz7way,343 multiz7way,388 multiz7way,749 multiz7way,810 multiz7way,827 multiz7way,836 multiz7way,852 multiz7way,875 multiz7way,920 multiz7way,925 multiz7way,959 multiz7way,976 multiz7way,980 multiz7way,1065 multiz7way,1141 multiz7way,1146 ncbiGeneBGP,8 ncbiGeneBGP,109 ncbiGeneBGP,171 ncbiGeneBGP,181 ncbiGeneBGP,187 ncbiProducts,10 ncbiProducts,125 ncbiProducts,187 ncbiProducts,197 ncbiProducts,203 nextstrainClade,12 nextstrainClade,62 nextstrainClade,82 nextstrainClade,141 nextstrainClade,151 nextstrainClade,161 nextstrainClade,172 nextstrainClade,231 nextstrainFreq,9 nextstrainFreq,63 nextstrainFreq,74 nextstrainFreq,153 nextstrainFreq,164 nextstrainFreq,294 nextstrainFreq,366 nextstrainFreq19A,9 nextstrainFreq19B,9 nextstrainFreq20A,9 nextstrainFreq20B,9 nextstrainFreq20C,9 nextstrainFreq20D,9 nextstrainFreq20F,9 nextstrainFreq20G,9 nextstrainFreq21A_Delta,11 nextstrainFreq21B_Kappa,11 nextstrainFreq21D_Eta,11 nextstrainFreq21E_Theta,11 nextstrainFreq21F_Iota,11 nextstrainFreq21G_Lambda,11 nextstrainFreq21H_Mu,11 nextstrainFreq21I_Delta,11 nextstrainFreq21J_Delta,11 nextstrainFreqAll,9 nextstrainFreqViewAll,9 nextstrainFreqViewNewClades,9 nextstrainGene,9 nextstrainGene,111 nextstrainGene,122 nextstrainGene,180 nextstrainParsimony,8 nextstrainParsimony,12 nextstrainParsimony,27 nextstrainParsimony,80 nextstrainParsimony,91 nextstrainParsimony,145 nextstrainParsimony,164 nextstrainParsimony,239 nextstrainParsimony,276 nextstrainParsimony,310 nextstrainParsimony,321 nextstrainParsimony,334 nextstrainParsimony,383 nextstrainParsimony,393 nextstrainParsimony,397 nextstrainSamples,12 nextstrainSamples,24 nextstrainSamples,195 nextstrainSamples,251 nextstrainSamples,382 nextstrainSamples,408 nextstrainSamples,422 nextstrainSamples,443 nextstrainSamples,525 nextstrainSamples,561 nextstrainSamples,613 nextstrainSamples,656 nextstrainSamples,676 nextstrainSamples,680 nextstrainSamples,710 nextstrainSamples,720 nextstrainSamples,726 nextstrainSamples,738 nextstrainSamples,780 nextstrainSamples,841 nextstrainSamples,946 nextstrainSamples,987 nextstrainSamples,1065 nextstrainSamples19A,15 nextstrainSamples19B,15 nextstrainSamples20A,15 nextstrainSamples20B,15 nextstrainSamples20C,15 nextstrainSamples20D,15 nextstrainSamples20F,15 nextstrainSamples20G,15 nextstrainSamples21A_Delta,17 nextstrainSamples21B_Kappa,17 nextstrainSamples21D_Eta,17 nextstrainSamples21E_Theta,17 nextstrainSamples21F_Iota,17 nextstrainSamples21G_Lambda,17 nextstrainSamples21H_Mu,17 nextstrainSamples21I_Delta,17 nextstrainSamples21J_Delta,17 nextstrainSamplesAll,12 nextstrainSamplesRb,15 nextstrainSamplesViewAll,12 nextstrainSamplesViewNewClades,12 pbm,49 pbm,62 pbm,87 pbm,111 pbm,168 pbm,221 pbm,259 pbm,433 pbmShanghai,49 pbmShanghai,62 pbmShanghai,89 pbmShanghai,108 pbmShanghai,118 pbmShanghai,143 pbmShanghai,168 pbmShanghai,197 pbmShanghai,249 pbmShanghai,326 pbmShanghai,368 pdb,10 pdb,61 pdb,109 phyloGenes,9 phyloGenes,32 phyloGenes,94 phyloGenes,121 phyloGenes,176 phyloGenes,191 phyloGenes,323 phyloGenes,463 phyloGenes,497 phyloGenes,509 phyloGenes,567 phyloGenes,597 pond,14 pond,32 pond,46 pond,89 pond,205 pond,211 poranHla1,16 poranHla1,30 poranHla1,36 poranHla1,66 poranHla1,82 poranHla1,102 poranHla1,122 poranHla2,16 poranHla2,30 poranHla2,36 poranHla2,66 poranHla2,82 poranHla2,102 poranHla2,122 potPathoIndel,7 potPathoIndel,16 potPathoIndel,27 potPathoIndel,38 potPathoIndel,127 potPathoIndel,141 potPathoIndel,155 potPathoIndel,176 potPathoIndel,226 primers,9 primers,81 primers,119 primers,155 primers,210 primers,217 primers,233 primers,388 problematicSites,14 problematicSites,41 problematicSites,57 problematicSites,78 problematicSites,123 problematicSites,375 problematicSites,427 problematicSites,445 problematicSites,464 problematicSites,472 problematicSites,599 problematicSitesCaution,11 problematicSitesMask,11 publicAnnots,11 publicAnnots,36 publicAnnots,69 pyle,12 pyle,64 pyle,71 pyle,141 pyle,301 pyle,320 rapid,13 rapid,110 rapid,128 rapid,157 rapid,198 rapid,348 rapid,360 rappuoli,228 rappuoli,252 rappuoli,277 rappuoli,311 rappuoli,340 rappuoli,472 rappuoli,493 rappuoli,503 rappuoli,515 rappuoli,518 rappuoli,585 rappuoli,600 rappuoli,616 rappuoli,624 rappuoli,639 rappuoli,826 recomb,11 recomb,198 recomb,216 recomb,244 resist,13 resist,32 resist,50 resistPred,21 resistPred,54 resistPred,70 resistPred,81 resistPred,90 resistPred,117 resistPred,157 resistPred,251 rfam,5 rfam,49 rfam,67 rfam,80 rfam,84 rfam,88 rfam,96 rfam,113 rfam,130 rnaStructRangan,9 rnaStructRangan,45 rnaStructRangan,58 rnaStructRangan,61 rnaStructRangan,90 rnaStructRangan,113 rnaStructRangan,118 rosettaMhc,8 rosettaMhc,21 rosettaMhc,94 rosettaMhc,107 rosettaMhc,138 rosettaMhc,156 rosettaMhc,182 rosettaMhc,212 rosettaMhc,250 rosettaMhc,261 rosettaMhc,317 rosettaMhc,326 rosettaMhc,334 rosettaMhc,354 rosettaMhc,374 rosettaMhc,393 sarsCov2Phylo,5 sarsCov2Phylo,17 sarsCov2Phylo,34 sarsCov2Phylo,166 sarsCov2Phylo,386 sarsCov2Phylo,441 sarsCov2Phylo,458 sarsCov2Phylo,770 sarsCov2Phylo,774 sarsCov2Phylo,812 sarsCov2Phylo,848 sarsCov2Phylo,863 sarsCov2Phylo,868 sarsCov2Phylo,896 sarsCov2Phylo,996 sarsCov2Phylo,1035 sarsCov2Phylo,1110 sarsCov2Phylo,1152 sarsCov2PhyloFull,17 sarsCov2PhyloMinAf001,19 sarsCov2PhyloMinAf01,19 sarsCov2PhyloPub,5 sarsCov2PhyloPub,15 sarsCov2PhyloPub,35 sarsCov2PhyloPub,48 sarsCov2PhyloPub,172 sarsCov2PhyloPub,337 sarsCov2PhyloPub,415 sarsCov2PhyloPub,470 sarsCov2PhyloPub,487 sarsCov2PhyloPub,760 sarsCov2PhyloPub,770 sarsCov2PhyloPub,821 sarsCov2PhyloPub,882 sarsCov2PhyloPub,926 sarsCov2PhyloPub,940 sarsCov2PhyloPub,950 sarsCov2PhyloPub,969 sarsCov2PhyloPub,974 sarsCov2PhyloPub,1002 sarsCov2PhyloPub,1027 sarsCov2PhyloPub,1116 sarsCov2PhyloPub,1155 sarsCov2PhyloPub,1233 sarsCov2PhyloPub,1285 sarsCov2PhyloPubAllFull,17 sarsCov2PhyloPubAllMinAf001,16 sarsCov2PhyloPubAllMinAf01,16 simpleRepeat,9 simpleRepeat,42 spikeMuts,12 spikeMuts,36 spikeMuts,46 spikeMuts,74 spikeMuts,165 spikeMuts,248 spikeMuts,364 spikeMuts,373 spikeMuts,390 spikeMuts,400 strainCons119way,13 strainCons119way,30 strainCons119way,106 strainCons119way,121 strainCons119way,139 strainCons119way,250 strainCons119way,260 strainCons119way,337 strainCons119way,351 strainCons119way,381 strainCons119way,385 strainCons119way,389 strainCons119way,394 strainCons119way,420 strainCons119way,436 strainCons119way,685 strainCons119way,730 strainCons119way,1509 strainCons119way,1673 strainCons119way,1702 strainCons119way,1815 strainCons119way,1828 strainCons119way,1834 strainCons119way,1848 strainCons119way,1900 strainCons119way,1946 strainCons119way,2053 strainCons119way,2058 strainCons119way,2139 strainCons119way,2167 strainCons119way,2205 strainCons119way,2214 strainCons119way,2230 strainCons119way,2253 strainCons119way,2298 strainCons119way,2303 strainCons119way,2337 strainCons119way,2354 strainCons119way,2358 strainCons119way,2443 strainCons119way,2519 strainCons119way,2524 strainCons119wayViewalign,12 strainCons119wayViewphastcons,13 strainCons119wayViewphyloP,13 strainCons44way,27 strainCons44way,69 strainCons44way,87 strainCons44way,198 strainCons44way,208 strainCons44way,285 strainCons44way,299 strainCons44way,329 strainCons44way,333 strainCons44way,337 strainCons44way,342 strainCons44way,368 strainCons44way,384 strainCons44way,633 strainCons44way,678 strainCons44way,1179 strainCons44way,1268 strainCons44way,1297 strainCons44way,1410 strainCons44way,1423 strainCons44way,1429 strainCons44way,1443 strainCons44way,1495 strainCons44way,1541 strainCons44way,1648 strainCons44way,1653 strainCons44way,1734 strainCons44way,1762 strainCons44way,1800 strainCons44way,1809 strainCons44way,1825 strainCons44way,1848 strainCons44way,1893 strainCons44way,1898 strainCons44way,1932 strainCons44way,1949 strainCons44way,1953 strainCons44way,2038 strainCons44way,2114 strainCons44way,2119 swift,8 swift,94 swift,129 swift,136 targets,8 targets,30 targets,41 targets,111 targets,184 targets,243 transcriptome,7 transcriptome,15 transcriptome,29 transcriptome,155 transcriptome,169 transcriptome,203 transcriptome,297 transcriptome,310 treangen,13 treangen,82 treangen,98 treangen,104 treangen,121 treangen,125 treangen,211 treangen,217 treangen,255 treangen,323 ucscToINSDC,11 ucscToRefSeq,6 unipCov2AliSwissprot,74 unipCov2AliSwissprot,114 unipCov2AliSwissprot,179 unipCov2AliSwissprot,220 unipCov2AliSwissprot,341 unipCov2AliSwissprot,417 unipCov2AliSwissprot,425 unipCov2AliSwissprot,484 unipCov2AliSwissprot,492 unipCov2Chain,188 unipCov2Chain,204 unipCov2Chain,214 unipCov2Chain,228 unipCov2Chain,237 unipCov2Chain,259 unipCov2Chain,299 unipCov2Chain,328 unipCov2Chain,377 unipCov2Chain,398 unipCov2Chain,432 unipCov2Chain,571 unipCov2Chain,647 unipCov2Chain,655 unipCov2Chain,713 unipCov2Chain,721 unipCov2DisulfBond,184 unipCov2DisulfBond,200 unipCov2DisulfBond,210 unipCov2DisulfBond,224 unipCov2DisulfBond,233 unipCov2DisulfBond,255 unipCov2DisulfBond,295 unipCov2DisulfBond,324 unipCov2DisulfBond,373 unipCov2DisulfBond,394 unipCov2DisulfBond,428 unipCov2DisulfBond,567 unipCov2DisulfBond,643 unipCov2DisulfBond,651 unipCov2DisulfBond,709 unipCov2DisulfBond,717 unipCov2Domain,183 unipCov2Domain,199 unipCov2Domain,209 unipCov2Domain,223 unipCov2Domain,232 unipCov2Domain,254 unipCov2Domain,294 unipCov2Domain,323 unipCov2Domain,372 unipCov2Domain,393 unipCov2Domain,427 unipCov2Domain,566 unipCov2Domain,642 unipCov2Domain,650 unipCov2Domain,708 unipCov2Domain,716 unipCov2Interest,46 unipCov2Interest,108 unipCov2Interest,247 unipCov2Interest,300 unipCov2Interest,308 unipCov2Interest,367 unipCov2Interest,375 unipCov2LocCytopl,183 unipCov2LocCytopl,199 unipCov2LocCytopl,209 unipCov2LocCytopl,223 unipCov2LocCytopl,232 unipCov2LocCytopl,254 unipCov2LocCytopl,294 unipCov2LocCytopl,323 unipCov2LocCytopl,372 unipCov2LocCytopl,393 unipCov2LocCytopl,427 unipCov2LocCytopl,566 unipCov2LocCytopl,642 unipCov2LocCytopl,650 unipCov2LocCytopl,708 unipCov2LocCytopl,716 unipCov2LocExtra,183 unipCov2LocExtra,199 unipCov2LocExtra,209 unipCov2LocExtra,223 unipCov2LocExtra,232 unipCov2LocExtra,254 unipCov2LocExtra,294 unipCov2LocExtra,323 unipCov2LocExtra,372 unipCov2LocExtra,393 unipCov2LocExtra,427 unipCov2LocExtra,566 unipCov2LocExtra,642 unipCov2LocExtra,650 unipCov2LocExtra,708 unipCov2LocExtra,716 unipCov2LocSignal,184 unipCov2LocSignal,200 unipCov2LocSignal,210 unipCov2LocSignal,224 unipCov2LocSignal,233 unipCov2LocSignal,255 unipCov2LocSignal,295 unipCov2LocSignal,324 unipCov2LocSignal,373 unipCov2LocSignal,394 unipCov2LocSignal,428 unipCov2LocSignal,567 unipCov2LocSignal,643 unipCov2LocSignal,651 unipCov2LocSignal,709 unipCov2LocSignal,717 unipCov2LocTransMemb,184 unipCov2LocTransMemb,200 unipCov2LocTransMemb,210 unipCov2LocTransMemb,224 unipCov2LocTransMemb,233 unipCov2LocTransMemb,255 unipCov2LocTransMemb,295 unipCov2LocTransMemb,324 unipCov2LocTransMemb,373 unipCov2LocTransMemb,394 unipCov2LocTransMemb,428 unipCov2LocTransMemb,567 unipCov2LocTransMemb,643 unipCov2LocTransMemb,651 unipCov2LocTransMemb,709 unipCov2LocTransMemb,717 unipCov2Modif,187 unipCov2Modif,203 unipCov2Modif,213 unipCov2Modif,227 unipCov2Modif,236 unipCov2Modif,258 unipCov2Modif,298 unipCov2Modif,327 unipCov2Modif,376 unipCov2Modif,397 unipCov2Modif,431 unipCov2Modif,570 unipCov2Modif,646 unipCov2Modif,654 unipCov2Modif,712 unipCov2Modif,720 unipCov2Mut,184 unipCov2Mut,200 unipCov2Mut,210 unipCov2Mut,224 unipCov2Mut,233 unipCov2Mut,255 unipCov2Mut,295 unipCov2Mut,324 unipCov2Mut,373 unipCov2Mut,394 unipCov2Mut,428 unipCov2Mut,567 unipCov2Mut,643 unipCov2Mut,651 unipCov2Mut,709 unipCov2Mut,717 unipCov2Other,184 unipCov2Other,200 unipCov2Other,210 unipCov2Other,224 unipCov2Other,233 unipCov2Other,255 unipCov2Other,295 unipCov2Other,324 unipCov2Other,373 unipCov2Other,394 unipCov2Other,428 unipCov2Other,567 unipCov2Other,643 unipCov2Other,651 unipCov2Other,709 unipCov2Other,717 unipCov2Repeat,182 unipCov2Repeat,198 unipCov2Repeat,208 unipCov2Repeat,222 unipCov2Repeat,231 unipCov2Repeat,253 unipCov2Repeat,293 unipCov2Repeat,322 unipCov2Repeat,371 unipCov2Repeat,392 unipCov2Repeat,426 unipCov2Repeat,565 unipCov2Repeat,641 unipCov2Repeat,649 unipCov2Repeat,707 unipCov2Repeat,715 unipCov2Struct,186 unipCov2Struct,202 unipCov2Struct,212 unipCov2Struct,226 unipCov2Struct,235 unipCov2Struct,257 unipCov2Struct,297 unipCov2Struct,326 unipCov2Struct,375 unipCov2Struct,396 unipCov2Struct,430 unipCov2Struct,569 unipCov2Struct,645 unipCov2Struct,653 unipCov2Struct,711 unipCov2Struct,719 vaccines,7 vaccines,98 vaccines,141 vaccines,204 vaccines,220 vaccines,243 vaccines,360 vaccines,431 vaccines,457 vaccines,512 vaccines,524 vaccines,573 variantAaMutsV2_B_1_1_7,20 variantAaMutsV2_B_1_351,20 variantAaMutsV2_B_1_429,20 variantAaMutsV2_B_1_525,19 variantAaMutsV2_B_1_526,20 variantAaMutsV2_B_1_617_1,20 variantAaMutsV2_B_1_617_2,20 variantAaMutsV2_B_1_621,20 variantAaMutsV2_C_37,20 variantAaMutsV2_P_1,20 variantAaMuts_BA_2,17 variantAaMuts_BA_2_12_1,17 variantAaMuts_BA_2_75,18 variantAaMuts_BA_2_86,17 variantAaMuts_BA_4,18 variantAaMuts_BA_5,18 variantAaMuts_BQ_1,17 variantAaMuts_B_1_1_529,17 variantAaMuts_CH_1_1,17 variantAaMuts_EG_5_1,17 variantAaMuts_HK_3,17 variantAaMuts_JN_1,17 variantAaMuts_XBB,17 variantAaMuts_XBB_1_16,17 variantAaMuts_XBB_1_5,17 variantAaMuts_XBB_1_5_70,17 variantAaMuts_XBB_1_9,17 variantAaMuts_XBB_2_3,17 variantMuts,22 variantMuts,30 variantMuts,78 variantMuts,106 variantMuts,214 variantMuts,250 variantMuts,760 variantMuts,808 variantMuts,945 variantMuts,961 variantMuts,1030 variantMuts,1037 variantMuts,1063 variantMuts,1125 variantMuts,1144 variantMuts,1156 variantMuts,1200 variantMuts,1212 variantMuts,1228 variantMuts,1237 variantMuts,1358 variantMuts,1372 variantNucMutsV2_B_1_1_7,19 variantNucMutsV2_B_1_351,19 variantNucMutsV2_B_1_429,19 variantNucMutsV2_B_1_525,18 variantNucMutsV2_B_1_526,19 variantNucMutsV2_B_1_617_1,19 variantNucMutsV2_B_1_617_2,19 variantNucMutsV2_B_1_621,19 variantNucMutsV2_C_37,19 variantNucMutsV2_P_1,19 variantNucMuts_BA_2,17 variantNucMuts_BA_2_12_1,17 variantNucMuts_BA_2_75,17 variantNucMuts_BA_2_86,17 variantNucMuts_BA_4,18 variantNucMuts_BA_5,18 variantNucMuts_BQ_1,17 variantNucMuts_B_1_1_529,19 variantNucMuts_CH_1_1,17 variantNucMuts_EG_5_1,17 variantNucMuts_HK_3,17 variantNucMuts_JN_1,17 variantNucMuts_XBB,17 variantNucMuts_XBB_1_16,17 variantNucMuts_XBB_1_5,17 variantNucMuts_XBB_1_5_70,17 variantNucMuts_XBB_1_9,17 variantNucMuts_XBB_2_3,17 varskip,11 varskip,24 varskip,30 varskip,66 varskip1a,7 varskip2,7 varskip2b,9 varskipVsl1a,9 weizmanOrfs,8 weizmanOrfs,15 weizmanOrfs,34 weizmanOrfs,60 weizmanOrfs,111 weizmanOrfs,114 weizmanOrfs,186 weizmanOrfs,221 weizmanOrfs,232 weizmanOrfs,251 weizmanOrfs,261 weizmanOrfs,289 windowmaskerSdust,10 andersen multiz7way,935 strainCons119way,2313 strainCons44way,1908 variantMuts,1213 variantMuts,1486 andreano abEscape,209 abEscape,861 bloomEscMabAvg,213 bloomEscMabAvg,865 bloomEscMax,219 bloomEscMax,871 bloomEscSerumAvg,214 bloomEscSerumAvg,866 bloomEscTop,217 bloomEscTop,869 escape,216 escape,868 mccoy,209 mccoy,861 rappuoli,216 rappuoli,868 andrew vaccines,49 vaccines,65 vaccines,206 vaccines,500 vaccines,618 variantMuts,1492 angie variantMuts,1238 angstroms contacts,115 resistPred,107 animals potPathoIndel,96 anlong-103 strainCons44way,1075 anna pyle,20 resist,9 resist,51 resist,143 resistPred,235 annot unipCov2Other,2 annotated PhyloCSF_smooth,282 PhyloCSFpower,297 Starr_Bloom,111 Starr_Bloom_bind,105 cas13Crispr,254 gap,119 iedb,24 multiz7way,524 multiz7way,548 ncbiProducts,5 ncbiProducts,50 nextstrainGene,4 nextstrainSamples,643 rfam,13 strainCons119way,76 strainCons119way,874 strainCons119way,898 strainCons44way,822 strainCons44way,846 targets,131 transcriptome,127 unipCov2AliSwissprot,230 annotation IgG_Z-score-_COVID-19_patients,309 IgM_Z-score-_COVID-19_patients,309 Q0_tracks,868 Q1_tracks,870 Q2_tracks,870 Q3_tracks,870 Starr_Bloom,90 Starr_Bloom_bind,84 artic,92 articV4,92 articV4_1,105 bpmIggCovidSum,318 bpmIgmCovidSum,318 cas13Crispr,377 contacts,305 galaxyEna,870 galaxyEnaQ0Ba-1,866 galaxyEnaQ0Ba-1-1,866 galaxyEnaQ0Ba-1-1-11,866 galaxyEnaQ0Ba-1-17,866 galaxyEnaQ0Ba-2,866 galaxyEnaQ1Ay-4,866 galaxyEnaQ1Ay-4-2,866 galaxyEnaQ1Ay-4-2-2,866 galaxyEnaQ1Ay-43,866 galaxyEnaQ1Ba-1-17,866 galaxyEnaQ2Ay-120,866 galaxyEnaQ2Ay-122,866 galaxyEnaQ2Ay-4,866 galaxyEnaQ2Ay-5,866 galaxyEnaQ2Ay-6,866 galaxyEnaQ3Ay-4,866 galaxyEnaQ3Ay-5,866 galaxyEnaQ3Ay-9,866 galaxyEnaQ3B-1-1-7,866 galaxyEnaQ3B-1-617-2,866 kimRnaMod,139 kimTranscripts,356 multiz7way,457 multiz7way,559 multiz7way,569 multiz7way,885 multiz7way,924 ncbiGeneBGP,61 ncbiProducts,77 pbm,318 pbmShanghai,435 phyloGenes,353 poranHla1,166 poranHla2,166 primers,358 rapid,246 resist,105 resistPred,197 spikeMuts,8 spikeMuts,106 spikeMuts,314 spikeMuts,377 strainCons119way,773 strainCons119way,807 strainCons119way,909 strainCons119way,919 strainCons119way,2263 strainCons119way,2302 strainCons44way,721 strainCons44way,755 strainCons44way,857 strainCons44way,867 strainCons44way,1858 strainCons44way,1897 strainCons44way,2251 swift,175 transcriptome,362 unipCov2AliSwissprot,59 unipCov2AliSwissprot,92 unipCov2AliSwissprot,113 unipCov2AliSwissprot,134 unipCov2AliSwissprot,282 unipCov2Chain,277 unipCov2Chain,298 unipCov2Chain,340 unipCov2Chain,512 unipCov2DisulfBond,273 unipCov2DisulfBond,294 unipCov2DisulfBond,336 unipCov2DisulfBond,508 unipCov2Domain,272 unipCov2Domain,293 unipCov2Domain,335 unipCov2Domain,507 unipCov2Interest,67 unipCov2Interest,77 unipCov2Interest,188 unipCov2LocCytopl,272 unipCov2LocCytopl,293 unipCov2LocCytopl,335 unipCov2LocCytopl,507 unipCov2LocExtra,272 unipCov2LocExtra,293 unipCov2LocExtra,335 unipCov2LocExtra,507 unipCov2LocSignal,273 unipCov2LocSignal,294 unipCov2LocSignal,336 unipCov2LocSignal,508 unipCov2LocTransMemb,273 unipCov2LocTransMemb,294 unipCov2LocTransMemb,336 unipCov2LocTransMemb,508 unipCov2Modif,276 unipCov2Modif,297 unipCov2Modif,339 unipCov2Modif,511 unipCov2Mut,273 unipCov2Mut,294 unipCov2Mut,336 unipCov2Mut,508 unipCov2Other,273 unipCov2Other,294 unipCov2Other,336 unipCov2Other,508 unipCov2Repeat,271 unipCov2Repeat,292 unipCov2Repeat,334 unipCov2Repeat,506 unipCov2Struct,275 unipCov2Struct,296 unipCov2Struct,338 unipCov2Struct,510 varskip,98 annotations IgG_Z-score-_COVID-19_patients,324 IgM_Z-score-_COVID-19_patients,324 abEscape,527 artic,107 articV4,107 articV4_1,120 bloomEscMabAvg,531 bloomEscMax,537 bloomEscSerumAvg,532 bloomEscTop,535 bpmIggCovidSum,333 bpmIgmCovidSum,333 cas13Crispr,392 contacts,320 escape,534 genscan,120 kimRnaMod,154 kimTranscripts,371 mccoy,527 multiz7way,475 ncbiGeneBGP,76 ncbiProducts,92 nextstrainClade,162 nextstrainClade,174 nextstrainFreq,154 nextstrainFreq,166 nextstrainGene,66 nextstrainGene,112 nextstrainGene,124 nextstrainParsimony,311 nextstrainParsimony,323 nextstrainSamples,658 pbm,333 pbmShanghai,450 phyloGenes,368 poranHla1,181 poranHla2,181 publicAnnots,5 publicAnnots,17 publicAnnots,32 publicAnnots,73 publicAnnots,103 rapid,261 rappuoli,534 resistPred,124 rfam,41 rnaStructRangan,35 strainCons119way,825 strainCons44way,773 swift,190 transcriptome,377 unipCov2AliSwissprot,13 unipCov2AliSwissprot,20 unipCov2AliSwissprot,52 unipCov2AliSwissprot,81 unipCov2AliSwissprot,183 unipCov2AliSwissprot,192 unipCov2AliSwissprot,308 unipCov2Chain,12 unipCov2Chain,19 unipCov2Chain,43 unipCov2Chain,78 unipCov2Chain,100 unipCov2Chain,222 unipCov2Chain,253 unipCov2Chain,256 unipCov2Chain,266 unipCov2Chain,312 unipCov2Chain,436 unipCov2Chain,445 unipCov2Chain,538 unipCov2DisulfBond,8 unipCov2DisulfBond,15 unipCov2DisulfBond,39 unipCov2DisulfBond,74 unipCov2DisulfBond,96 unipCov2DisulfBond,218 unipCov2DisulfBond,249 unipCov2DisulfBond,252 unipCov2DisulfBond,262 unipCov2DisulfBond,308 unipCov2DisulfBond,432 unipCov2DisulfBond,441 unipCov2DisulfBond,534 unipCov2Domain,7 unipCov2Domain,14 unipCov2Domain,38 unipCov2Domain,73 unipCov2Domain,95 unipCov2Domain,217 unipCov2Domain,248 unipCov2Domain,251 unipCov2Domain,261 unipCov2Domain,307 unipCov2Domain,431 unipCov2Domain,440 unipCov2Domain,533 unipCov2Interest,9 unipCov2Interest,16 unipCov2Interest,53 unipCov2Interest,112 unipCov2Interest,121 unipCov2Interest,214 unipCov2LocCytopl,7 unipCov2LocCytopl,14 unipCov2LocCytopl,38 unipCov2LocCytopl,73 unipCov2LocCytopl,95 unipCov2LocCytopl,217 unipCov2LocCytopl,248 unipCov2LocCytopl,251 unipCov2LocCytopl,261 unipCov2LocCytopl,307 unipCov2LocCytopl,431 unipCov2LocCytopl,440 unipCov2LocCytopl,533 unipCov2LocExtra,7 unipCov2LocExtra,14 unipCov2LocExtra,38 unipCov2LocExtra,73 unipCov2LocExtra,95 unipCov2LocExtra,217 unipCov2LocExtra,248 unipCov2LocExtra,251 unipCov2LocExtra,261 unipCov2LocExtra,307 unipCov2LocExtra,431 unipCov2LocExtra,440 unipCov2LocExtra,533 unipCov2LocSignal,8 unipCov2LocSignal,15 unipCov2LocSignal,39 unipCov2LocSignal,74 unipCov2LocSignal,96 unipCov2LocSignal,218 unipCov2LocSignal,249 unipCov2LocSignal,252 unipCov2LocSignal,262 unipCov2LocSignal,308 unipCov2LocSignal,432 unipCov2LocSignal,441 unipCov2LocSignal,534 unipCov2LocTransMemb,8 unipCov2LocTransMemb,15 unipCov2LocTransMemb,39 unipCov2LocTransMemb,74 unipCov2LocTransMemb,96 unipCov2LocTransMemb,218 unipCov2LocTransMemb,249 unipCov2LocTransMemb,252 unipCov2LocTransMemb,262 unipCov2LocTransMemb,308 unipCov2LocTransMemb,432 unipCov2LocTransMemb,441 unipCov2LocTransMemb,534 unipCov2Modif,11 unipCov2Modif,18 unipCov2Modif,42 unipCov2Modif,77 unipCov2Modif,99 unipCov2Modif,221 unipCov2Modif,252 unipCov2Modif,255 unipCov2Modif,265 unipCov2Modif,311 unipCov2Modif,435 unipCov2Modif,444 unipCov2Modif,537 unipCov2Mut,8 unipCov2Mut,15 unipCov2Mut,39 unipCov2Mut,74 unipCov2Mut,96 unipCov2Mut,218 unipCov2Mut,249 unipCov2Mut,252 unipCov2Mut,262 unipCov2Mut,308 unipCov2Mut,432 unipCov2Mut,441 unipCov2Mut,534 unipCov2Other,5 unipCov2Other,8 unipCov2Other,15 unipCov2Other,39 unipCov2Other,74 unipCov2Other,96 unipCov2Other,218 unipCov2Other,249 unipCov2Other,252 unipCov2Other,262 unipCov2Other,308 unipCov2Other,432 unipCov2Other,441 unipCov2Other,534 unipCov2Repeat,6 unipCov2Repeat,13 unipCov2Repeat,37 unipCov2Repeat,72 unipCov2Repeat,94 unipCov2Repeat,216 unipCov2Repeat,247 unipCov2Repeat,250 unipCov2Repeat,260 unipCov2Repeat,306 unipCov2Repeat,430 unipCov2Repeat,439 unipCov2Repeat,532 unipCov2Struct,7 unipCov2Struct,10 unipCov2Struct,17 unipCov2Struct,41 unipCov2Struct,76 unipCov2Struct,98 unipCov2Struct,220 unipCov2Struct,251 unipCov2Struct,254 unipCov2Struct,264 unipCov2Struct,310 unipCov2Struct,434 unipCov2Struct,443 unipCov2Struct,536 varskip,113 another Q0_tracks,849 Q1_tracks,851 Q2_tracks,851 Q3_tracks,851 abEscape,469 bloomEscMabAvg,473 bloomEscMax,479 bloomEscSerumAvg,474 bloomEscTop,477 escape,476 galaxyEna,851 galaxyEnaQ0Ba-1,847 galaxyEnaQ0Ba-1-1,847 galaxyEnaQ0Ba-1-1-11,847 galaxyEnaQ0Ba-1-17,847 galaxyEnaQ0Ba-2,847 galaxyEnaQ1Ay-4,847 galaxyEnaQ1Ay-4-2,847 galaxyEnaQ1Ay-4-2-2,847 galaxyEnaQ1Ay-43,847 galaxyEnaQ1Ba-1-17,847 galaxyEnaQ2Ay-120,847 galaxyEnaQ2Ay-122,847 galaxyEnaQ2Ay-4,847 galaxyEnaQ2Ay-5,847 galaxyEnaQ2Ay-6,847 galaxyEnaQ3Ay-4,847 galaxyEnaQ3Ay-5,847 galaxyEnaQ3Ay-9,847 galaxyEnaQ3B-1-1-7,847 galaxyEnaQ3B-1-617-2,847 mccoy,469 rappuoli,476 strainCons119way,300 strainCons44way,248 antib bpmIggCovidSum,1 bpmIgmCovidSum,1 pbm,1 pbmShanghai,2 antibodies abEscape,8 abEscape,30 abEscape,33 abEscape,92 abEscape,117 abEscape,123 abEscape,137 abEscape,140 abEscape,157 abEscape,165 abEscape,220 abEscape,264 abEscape,267 abEscape,358 abEscape,416 abEscape,584 abEscape,600 abEscape,621 abEscape,720 abEscape,848 bloomEscMabAvg,34 bloomEscMabAvg,37 bloomEscMabAvg,96 bloomEscMabAvg,121 bloomEscMabAvg,127 bloomEscMabAvg,141 bloomEscMabAvg,144 bloomEscMabAvg,161 bloomEscMabAvg,169 bloomEscMabAvg,224 bloomEscMabAvg,268 bloomEscMabAvg,271 bloomEscMabAvg,362 bloomEscMabAvg,420 bloomEscMabAvg,588 bloomEscMabAvg,604 bloomEscMabAvg,625 bloomEscMabAvg,724 bloomEscMabAvg,852 bloomEscMax,40 bloomEscMax,43 bloomEscMax,102 bloomEscMax,127 bloomEscMax,133 bloomEscMax,147 bloomEscMax,150 bloomEscMax,167 bloomEscMax,175 bloomEscMax,230 bloomEscMax,274 bloomEscMax,277 bloomEscMax,368 bloomEscMax,426 bloomEscMax,594 bloomEscMax,610 bloomEscMax,631 bloomEscMax,730 bloomEscMax,858 bloomEscSerumAvg,35 bloomEscSerumAvg,38 bloomEscSerumAvg,97 bloomEscSerumAvg,122 bloomEscSerumAvg,128 bloomEscSerumAvg,142 bloomEscSerumAvg,145 bloomEscSerumAvg,162 bloomEscSerumAvg,170 bloomEscSerumAvg,225 bloomEscSerumAvg,269 bloomEscSerumAvg,272 bloomEscSerumAvg,363 bloomEscSerumAvg,421 bloomEscSerumAvg,589 bloomEscSerumAvg,605 bloomEscSerumAvg,626 bloomEscSerumAvg,725 bloomEscSerumAvg,853 bloomEscTop,38 bloomEscTop,41 bloomEscTop,100 bloomEscTop,125 bloomEscTop,131 bloomEscTop,145 bloomEscTop,148 bloomEscTop,165 bloomEscTop,173 bloomEscTop,228 bloomEscTop,272 bloomEscTop,275 bloomEscTop,366 bloomEscTop,424 bloomEscTop,592 bloomEscTop,608 bloomEscTop,629 bloomEscTop,728 bloomEscTop,856 escape,15 escape,37 escape,40 escape,99 escape,124 escape,130 escape,144 escape,147 escape,164 escape,172 escape,227 escape,271 escape,274 escape,365 escape,423 escape,591 escape,607 escape,628 escape,727 escape,855 mccoy,30 mccoy,33 mccoy,92 mccoy,117 mccoy,123 mccoy,137 mccoy,140 mccoy,157 mccoy,165 mccoy,220 mccoy,264 mccoy,267 mccoy,358 mccoy,416 mccoy,584 mccoy,600 mccoy,621 mccoy,720 mccoy,848 pbmShanghai,524 rappuoli,14 rappuoli,37 rappuoli,40 rappuoli,99 rappuoli,124 rappuoli,130 rappuoli,144 rappuoli,147 rappuoli,164 rappuoli,172 rappuoli,227 rappuoli,271 rappuoli,274 rappuoli,365 rappuoli,423 rappuoli,591 rappuoli,607 rappuoli,628 rappuoli,727 rappuoli,855 antibody A_120Max,6 A_120Total,6 A_21Max,6 A_21Total,6 A_45Max,6 A_45Total,6 B_113Max,6 B_113Total,6 B_26Max,6 B_26Total,6 COV2-2050Max,4 COV2-2050Total,5 COV2-2082Max,4 COV2-2082Total,5 COV2-2094Max,4 COV2-2094Total,5 COV2-2096Max,4 COV2-2096Total,5 COV2-2165Max,4 COV2-2165Total,5 COV2-2479Max,4 COV2-2479Total,5 COV2-2499Max,4 COV2-2499Total,5 COV2-2677Max,4 COV2-2677Total,5 COV2-2832Max,4 COV2-2832Total,5 C_104Max,6 C_104Total,6 C_32Max,6 C_32Total,6 D_33Max,6 D_33Total,6 D_76Max,6 D_76Total,6 E_104Max,6 E_104Total,6 E_28Max,6 E_28Total,6 F_115Max,6 F_115Total,6 F_48Max,6 F_48Total,6 G_18Max,6 G_18Total,6 G_94Max,6 G_94Total,6 H_152Max,6 H_152Total,6 H_61Max,6 H_61Total,6 I_102Max,6 I_102Total,6 I_26Max,6 I_26Total,6 IgG_Z-score-_COVID-19_patients,433 IgM_Z-score-_COVID-19_patients,433 J_121Max,6 J_121Total,6 J_15Max,6 J_15Total,6 K_103Max,6 K_103Total,6 K_29Max,6 K_29Total,6 LY-CoV016Max,4 LY-CoV016Total,5 REGN10933-REGN10987Max,4 REGN10933-REGN10987Total,5 REGN10933Max,4 REGN10933Total,5 REGN10987Max,4 REGN10987Total,5 Starr_Bloom,33 Starr_Bloom,70 abEscape,1 abEscape,302 abEscape,326 abEscape,331 abEscape,351 abEscape,429 abEscape,516 abEscape,759 abEscape,821 bloomEscMabAvg,9 bloomEscMabAvg,306 bloomEscMabAvg,330 bloomEscMabAvg,335 bloomEscMabAvg,355 bloomEscMabAvg,433 bloomEscMabAvg,520 bloomEscMabAvg,763 bloomEscMabAvg,825 bloomEscMax,8 bloomEscMax,312 bloomEscMax,336 bloomEscMax,341 bloomEscMax,361 bloomEscMax,439 bloomEscMax,526 bloomEscMax,769 bloomEscMax,831 bloomEscSerumAvg,10 bloomEscSerumAvg,307 bloomEscSerumAvg,331 bloomEscSerumAvg,336 bloomEscSerumAvg,356 bloomEscSerumAvg,434 bloomEscSerumAvg,521 bloomEscSerumAvg,764 bloomEscSerumAvg,826 bloomEscTop,9 bloomEscTop,310 bloomEscTop,334 bloomEscTop,339 bloomEscTop,359 bloomEscTop,437 bloomEscTop,524 bloomEscTop,767 bloomEscTop,829 bloomEscTotal,8 bpmIggCovidSum,6 bpmIggCovidSum,442 bpmIgmCovidSum,6 bpmIgmCovidSum,442 escape,309 escape,333 escape,338 escape,358 escape,436 escape,523 escape,766 escape,828 igg,5 iggAllSum,7 igm,5 igmAllSum,7 mccoy,302 mccoy,326 mccoy,331 mccoy,351 mccoy,429 mccoy,516 mccoy,759 mccoy,821 pbm,4 pbm,442 pbmShanghai,7 rCR3022Max,4 rCR3022Total,5 rappuoli,309 rappuoli,333 rappuoli,338 rappuoli,358 rappuoli,436 rappuoli,523 rappuoli,766 rappuoli,828 spikeMuts,190 anticipating nextstrainClade,64 antigen-specific rosettaMhc,125 antigens rosettaMhc,134 antisense PhyloCSF_smooth,350 PhyloCSFpower,365 any IgG_Z-score-_COVID-19_patients,121 IgG_Z-score-_COVID-19_patients,141 IgM_Z-score-_COVID-19_patients,121 IgM_Z-score-_COVID-19_patients,141 Q0_tracks,146 Q0_tracks,545 Q0_tracks,981 Q1_tracks,148 Q1_tracks,547 Q1_tracks,983 Q2_tracks,148 Q2_tracks,547 Q2_tracks,983 Q3_tracks,148 Q3_tracks,547 Q3_tracks,983 abEscape,349 bloomEscMabAvg,353 bloomEscMax,359 bloomEscSerumAvg,354 bloomEscTop,357 bpmIggCovidSum,130 bpmIggCovidSum,150 bpmIgmCovidSum,130 bpmIgmCovidSum,150 cas13Crispr,315 contacts,91 escape,356 galaxyEna,148 galaxyEna,547 galaxyEna,983 galaxyEnaQ0Ba-1,144 galaxyEnaQ0Ba-1,543 galaxyEnaQ0Ba-1,979 galaxyEnaQ0Ba-1-1,144 galaxyEnaQ0Ba-1-1,543 galaxyEnaQ0Ba-1-1,979 galaxyEnaQ0Ba-1-1-11,144 galaxyEnaQ0Ba-1-1-11,543 galaxyEnaQ0Ba-1-1-11,979 galaxyEnaQ0Ba-1-17,144 galaxyEnaQ0Ba-1-17,543 galaxyEnaQ0Ba-1-17,979 galaxyEnaQ0Ba-2,144 galaxyEnaQ0Ba-2,543 galaxyEnaQ0Ba-2,979 galaxyEnaQ1Ay-4,144 galaxyEnaQ1Ay-4,543 galaxyEnaQ1Ay-4,979 galaxyEnaQ1Ay-4-2,144 galaxyEnaQ1Ay-4-2,543 galaxyEnaQ1Ay-4-2,979 galaxyEnaQ1Ay-4-2-2,144 galaxyEnaQ1Ay-4-2-2,543 galaxyEnaQ1Ay-4-2-2,979 galaxyEnaQ1Ay-43,144 galaxyEnaQ1Ay-43,543 galaxyEnaQ1Ay-43,979 galaxyEnaQ1Ba-1-17,144 galaxyEnaQ1Ba-1-17,543 galaxyEnaQ1Ba-1-17,979 galaxyEnaQ2Ay-120,144 galaxyEnaQ2Ay-120,543 galaxyEnaQ2Ay-120,979 galaxyEnaQ2Ay-122,144 galaxyEnaQ2Ay-122,543 galaxyEnaQ2Ay-122,979 galaxyEnaQ2Ay-4,144 galaxyEnaQ2Ay-4,543 galaxyEnaQ2Ay-4,979 galaxyEnaQ2Ay-5,144 galaxyEnaQ2Ay-5,543 galaxyEnaQ2Ay-5,979 galaxyEnaQ2Ay-6,144 galaxyEnaQ2Ay-6,543 galaxyEnaQ2Ay-6,979 galaxyEnaQ3Ay-4,144 galaxyEnaQ3Ay-4,543 galaxyEnaQ3Ay-4,979 galaxyEnaQ3Ay-5,144 galaxyEnaQ3Ay-5,543 galaxyEnaQ3Ay-5,979 galaxyEnaQ3Ay-9,144 galaxyEnaQ3Ay-9,543 galaxyEnaQ3Ay-9,979 galaxyEnaQ3B-1-1-7,144 galaxyEnaQ3B-1-1-7,543 galaxyEnaQ3B-1-1-7,979 galaxyEnaQ3B-1-617-2,144 galaxyEnaQ3B-1-617-2,543 galaxyEnaQ3B-1-617-2,979 mccoy,349 nextstrainSamples,117 pbm,130 pbm,150 pbmShanghai,187 rappuoli,356 anyone publicAnnots,29 ap sarsCov2Phylo,1126 sarsCov2PhyloPub,1259 ap-ms gordon2,60 api articV4_1,87 cpgIslandExt,519 cpgIslandExtUnmasked,522 cpgIslandSuper,519 icshape,120 nextstrainClade,217 nextstrainFreq,209 nextstrainGene,166 nextstrainParsimony,378 poranHla1,67 poranHla2,67 primers,354 problematicSites,536 recomb,311 resist,122 resistPred,214 sarsCov2PhyloPub,888 variantMuts,1012 api.genome.ucsc.edu icshape,122 nextstrainFreq,211 api_coverage poranHla1,72 poranHla2,72 appear Q0_tracks,468 Q1_tracks,470 Q2_tracks,470 Q3_tracks,470 galaxyEna,470 galaxyEnaQ0Ba-1,466 galaxyEnaQ0Ba-1-1,466 galaxyEnaQ0Ba-1-1-11,466 galaxyEnaQ0Ba-1-17,466 galaxyEnaQ0Ba-2,466 galaxyEnaQ1Ay-4,466 galaxyEnaQ1Ay-4-2,466 galaxyEnaQ1Ay-4-2-2,466 galaxyEnaQ1Ay-43,466 galaxyEnaQ1Ba-1-17,466 galaxyEnaQ2Ay-120,466 galaxyEnaQ2Ay-122,466 galaxyEnaQ2Ay-4,466 galaxyEnaQ2Ay-5,466 galaxyEnaQ2Ay-6,466 galaxyEnaQ3Ay-4,466 galaxyEnaQ3Ay-5,466 galaxyEnaQ3Ay-9,466 galaxyEnaQ3B-1-1-7,466 galaxyEnaQ3B-1-617-2,466 potPathoIndel,68 potPathoIndel,87 problematicSites,212 appearance strainCons119way,233 strainCons44way,181 appears nextstrainParsimony,175 nextstrainParsimony,403 nextstrainSamples,732 applicable nextstrainSamples,140 application contacts,212 rosettaMhc,86 applications PhyloCSF_smooth,95 PhyloCSFpower,110 applied Calu3_07hpi,90 Calu3_07hpi,199 ORFs,88 ORFs,197 Vero6_05hpi,90 Vero6_05hpi,199 Vero6_24hpi,90 Vero6_24hpi,199 abEscape,338 bloomEscMabAvg,342 bloomEscMax,348 bloomEscSerumAvg,343 bloomEscTop,346 escape,345 mccoy,338 problematicSites,400 rappuoli,345 variantMuts,942 weizmanOrfs,96 weizmanOrfs,205 approach multiz7way,990 rapid,43 recomb,235 rosettaMhc,56 strainCons119way,2368 strainCons44way,1963 unipCov2AliSwissprot,208 unipCov2Chain,461 unipCov2DisulfBond,457 unipCov2Domain,456 unipCov2Interest,137 unipCov2LocCytopl,456 unipCov2LocExtra,456 unipCov2LocSignal,457 unipCov2LocTransMemb,457 unipCov2Modif,460 unipCov2Mut,457 unipCov2Other,457 unipCov2Repeat,455 unipCov2Struct,459 approaches Calu3_07hpi,96 ORFs,94 Vero6_05hpi,96 Vero6_24hpi,96 epitopes,287 rapid,120 weizmanOrfs,102 appropriate nextstrainFreq,350 strainCons119way,276 strainCons44way,224 approximate transcriptome,240 approximation PhyloCSF_smooth,530 PhyloCSFpower,545 apr genscan,224 kimTranscripts,479 multiz7way,1201 pond,295 sarsCov2Phylo,1041 sarsCov2PhyloPub,1161 strainCons119way,2579 strainCons44way,2174 transcriptome,485 apsects gc5BaseBw,51 araujo pyle,60 pyle,282 pyle,311 architecture kimIvtCov,186 kimNp,118 kimRnaMod,243 kimTranscripts,473 transcriptome,479 archive Q0_tracks,825 Q1_tracks,827 Q2_tracks,827 Q3_tracks,827 galaxyEna,827 galaxyEnaQ0Ba-1,823 galaxyEnaQ0Ba-1-1,823 galaxyEnaQ0Ba-1-1-11,823 galaxyEnaQ0Ba-1-17,823 galaxyEnaQ0Ba-2,823 galaxyEnaQ1Ay-4,823 galaxyEnaQ1Ay-4-2,823 galaxyEnaQ1Ay-4-2-2,823 galaxyEnaQ1Ay-43,823 galaxyEnaQ1Ba-1-17,823 galaxyEnaQ2Ay-120,823 galaxyEnaQ2Ay-122,823 galaxyEnaQ2Ay-4,823 galaxyEnaQ2Ay-5,823 galaxyEnaQ2Ay-6,823 galaxyEnaQ3Ay-4,823 galaxyEnaQ3Ay-5,823 galaxyEnaQ3Ay-9,823 galaxyEnaQ3B-1-1-7,823 galaxyEnaQ3B-1-617-2,823 spikeMuts,335 unipCov2AliSwissprot,377 unipCov2Chain,607 unipCov2DisulfBond,603 unipCov2Domain,602 unipCov2LocCytopl,602 unipCov2LocExtra,602 unipCov2LocSignal,603 unipCov2LocTransMemb,603 unipCov2Modif,606 unipCov2Mut,603 unipCov2Other,603 unipCov2Repeat,601 unipCov2Struct,605 archives Calu3_07hpi,334 IgG_Z-score-_COVID-19_patients,390 IgM_Z-score-_COVID-19_patients,390 ORFs,332 PhyloCSF_smooth,659 Starr_Bloom,226 Starr_Bloom_bind,220 Vero6_05hpi,334 Vero6_24hpi,334 abEscape,678 artic,172 articV4,172 articV4_1,185 bloomEscMabAvg,682 bloomEscMax,688 bloomEscSerumAvg,683 bloomEscTop,686 bpmIggCovidSum,399 bpmIgmCovidSum,399 cas13Crispr,457 contacts,385 escape,685 icshape,169 kimRnaMod,219 kimTranscripts,437 mccoy,678 microdel,176 ncbiGeneBGP,152 ncbiProducts,168 nextstrainFreq,257 pbm,399 pbmShanghai,482 phyloGenes,434 poranHla1,247 poranHla2,247 rapid,326 rappuoli,685 resist,129 resistPred,221 spikeMuts,344 swift,255 transcriptome,443 unipCov2AliSwissprot,389 unipCov2Chain,619 unipCov2DisulfBond,615 unipCov2Domain,614 unipCov2LocCytopl,614 unipCov2LocExtra,614 unipCov2LocSignal,615 unipCov2LocTransMemb,615 unipCov2Modif,618 unipCov2Mut,615 unipCov2Other,615 unipCov2Repeat,613 unipCov2Struct,617 varskip,178 weizmanOrfs,340 ardern phyloGenes,553 are Calu3_07hpi,235 IgG_Z-score-_COVID-19_patients,90 IgG_Z-score-_COVID-19_patients,165 IgG_Z-score-_COVID-19_patients,179 IgG_Z-score-_COVID-19_patients,274 IgM_Z-score-_COVID-19_patients,90 IgM_Z-score-_COVID-19_patients,165 IgM_Z-score-_COVID-19_patients,179 IgM_Z-score-_COVID-19_patients,274 ORFs,233 PhyloCSF_smooth,155 PhyloCSF_smooth,472 PhyloCSF_smooth,605 PhyloCSFpower,170 PhyloCSFpower,487 PhyloCSFpower,616 Q0_tracks,68 Q0_tracks,97 Q0_tracks,230 Q0_tracks,307 Q0_tracks,476 Q0_tracks,733 Q0_tracks,924 Q0_tracks,959 Q0_tracks,991 Q0_tracks,1006 Q0_tracks,1026 Q1_tracks,70 Q1_tracks,99 Q1_tracks,232 Q1_tracks,309 Q1_tracks,478 Q1_tracks,735 Q1_tracks,926 Q1_tracks,961 Q1_tracks,993 Q1_tracks,1008 Q1_tracks,1028 Q2_tracks,70 Q2_tracks,99 Q2_tracks,232 Q2_tracks,309 Q2_tracks,478 Q2_tracks,735 Q2_tracks,926 Q2_tracks,961 Q2_tracks,993 Q2_tracks,1008 Q2_tracks,1028 Q3_tracks,70 Q3_tracks,99 Q3_tracks,232 Q3_tracks,309 Q3_tracks,478 Q3_tracks,735 Q3_tracks,926 Q3_tracks,961 Q3_tracks,993 Q3_tracks,1008 Q3_tracks,1028 Starr_Bloom,161 Starr_Bloom_bind,155 Vero6_05hpi,235 Vero6_24hpi,235 abEscape,249 abEscape,344 abEscape,353 abEscape,378 abEscape,484 abEscape,503 abEscape,534 abEscape,544 addgene,32 addgene,37 addgene,47 addgene,81 addgene,114 artic,36 articV4,39 articV4_1,50 augustusGene,27 bloomEscMabAvg,253 bloomEscMabAvg,348 bloomEscMabAvg,357 bloomEscMabAvg,382 bloomEscMabAvg,488 bloomEscMabAvg,507 bloomEscMabAvg,538 bloomEscMabAvg,548 bloomEscMax,259 bloomEscMax,354 bloomEscMax,363 bloomEscMax,388 bloomEscMax,494 bloomEscMax,513 bloomEscMax,544 bloomEscMax,554 bloomEscSerumAvg,254 bloomEscSerumAvg,349 bloomEscSerumAvg,358 bloomEscSerumAvg,383 bloomEscSerumAvg,489 bloomEscSerumAvg,508 bloomEscSerumAvg,539 bloomEscSerumAvg,549 bloomEscTop,257 bloomEscTop,352 bloomEscTop,361 bloomEscTop,386 bloomEscTop,492 bloomEscTop,511 bloomEscTop,542 bloomEscTop,552 bpmIggCovidSum,99 bpmIggCovidSum,174 bpmIggCovidSum,188 bpmIggCovidSum,283 bpmIgmCovidSum,99 bpmIgmCovidSum,174 bpmIgmCovidSum,188 bpmIgmCovidSum,283 cas13Crispr,55 cas13Crispr,93 cas13Crispr,183 cas13Crispr,474 contacts,46 contacts,63 contacts,138 contacts,179 contacts,190 contacts,274 cpgIslandExt,8 cpgIslandExt,17 cpgIslandExt,28 cpgIslandExt,116 cpgIslandExt,149 cpgIslandExt,153 cpgIslandExtUnmasked,11 cpgIslandExtUnmasked,20 cpgIslandExtUnmasked,31 cpgIslandExtUnmasked,119 cpgIslandExtUnmasked,152 cpgIslandExtUnmasked,156 cpgIslandSuper,8 cpgIslandSuper,17 cpgIslandSuper,28 cpgIslandSuper,116 cpgIslandSuper,149 cpgIslandSuper,153 crisprDet,23 crisprDet,48 crisprDet,60 crisprDet,67 crisprDet,95 crisprDet,121 epitopes,295 escape,256 escape,351 escape,360 escape,385 escape,491 escape,510 escape,541 escape,551 galaxyEna,70 galaxyEna,99 galaxyEna,232 galaxyEna,309 galaxyEna,478 galaxyEna,735 galaxyEna,926 galaxyEna,961 galaxyEna,993 galaxyEna,1008 galaxyEna,1028 galaxyEnaQ0Ba-1,66 galaxyEnaQ0Ba-1,95 galaxyEnaQ0Ba-1,228 galaxyEnaQ0Ba-1,305 galaxyEnaQ0Ba-1,474 galaxyEnaQ0Ba-1,731 galaxyEnaQ0Ba-1,922 galaxyEnaQ0Ba-1,957 galaxyEnaQ0Ba-1,989 galaxyEnaQ0Ba-1,1004 galaxyEnaQ0Ba-1,1024 galaxyEnaQ0Ba-1-1,66 galaxyEnaQ0Ba-1-1,95 galaxyEnaQ0Ba-1-1,228 galaxyEnaQ0Ba-1-1,305 galaxyEnaQ0Ba-1-1,474 galaxyEnaQ0Ba-1-1,731 galaxyEnaQ0Ba-1-1,922 galaxyEnaQ0Ba-1-1,957 galaxyEnaQ0Ba-1-1,989 galaxyEnaQ0Ba-1-1,1004 galaxyEnaQ0Ba-1-1,1024 galaxyEnaQ0Ba-1-1-11,66 galaxyEnaQ0Ba-1-1-11,95 galaxyEnaQ0Ba-1-1-11,228 galaxyEnaQ0Ba-1-1-11,305 galaxyEnaQ0Ba-1-1-11,474 galaxyEnaQ0Ba-1-1-11,731 galaxyEnaQ0Ba-1-1-11,922 galaxyEnaQ0Ba-1-1-11,957 galaxyEnaQ0Ba-1-1-11,989 galaxyEnaQ0Ba-1-1-11,1004 galaxyEnaQ0Ba-1-1-11,1024 galaxyEnaQ0Ba-1-17,66 galaxyEnaQ0Ba-1-17,95 galaxyEnaQ0Ba-1-17,228 galaxyEnaQ0Ba-1-17,305 galaxyEnaQ0Ba-1-17,474 galaxyEnaQ0Ba-1-17,731 galaxyEnaQ0Ba-1-17,922 galaxyEnaQ0Ba-1-17,957 galaxyEnaQ0Ba-1-17,989 galaxyEnaQ0Ba-1-17,1004 galaxyEnaQ0Ba-1-17,1024 galaxyEnaQ0Ba-2,66 galaxyEnaQ0Ba-2,95 galaxyEnaQ0Ba-2,228 galaxyEnaQ0Ba-2,305 galaxyEnaQ0Ba-2,474 galaxyEnaQ0Ba-2,731 galaxyEnaQ0Ba-2,922 galaxyEnaQ0Ba-2,957 galaxyEnaQ0Ba-2,989 galaxyEnaQ0Ba-2,1004 galaxyEnaQ0Ba-2,1024 galaxyEnaQ1Ay-4,66 galaxyEnaQ1Ay-4,95 galaxyEnaQ1Ay-4,228 galaxyEnaQ1Ay-4,305 galaxyEnaQ1Ay-4,474 galaxyEnaQ1Ay-4,731 galaxyEnaQ1Ay-4,922 galaxyEnaQ1Ay-4,957 galaxyEnaQ1Ay-4,989 galaxyEnaQ1Ay-4,1004 galaxyEnaQ1Ay-4,1024 galaxyEnaQ1Ay-4-2,66 galaxyEnaQ1Ay-4-2,95 galaxyEnaQ1Ay-4-2,228 galaxyEnaQ1Ay-4-2,305 galaxyEnaQ1Ay-4-2,474 galaxyEnaQ1Ay-4-2,731 galaxyEnaQ1Ay-4-2,922 galaxyEnaQ1Ay-4-2,957 galaxyEnaQ1Ay-4-2,989 galaxyEnaQ1Ay-4-2,1004 galaxyEnaQ1Ay-4-2,1024 galaxyEnaQ1Ay-4-2-2,66 galaxyEnaQ1Ay-4-2-2,95 galaxyEnaQ1Ay-4-2-2,228 galaxyEnaQ1Ay-4-2-2,305 galaxyEnaQ1Ay-4-2-2,474 galaxyEnaQ1Ay-4-2-2,731 galaxyEnaQ1Ay-4-2-2,922 galaxyEnaQ1Ay-4-2-2,957 galaxyEnaQ1Ay-4-2-2,989 galaxyEnaQ1Ay-4-2-2,1004 galaxyEnaQ1Ay-4-2-2,1024 galaxyEnaQ1Ay-43,66 galaxyEnaQ1Ay-43,95 galaxyEnaQ1Ay-43,228 galaxyEnaQ1Ay-43,305 galaxyEnaQ1Ay-43,474 galaxyEnaQ1Ay-43,731 galaxyEnaQ1Ay-43,922 galaxyEnaQ1Ay-43,957 galaxyEnaQ1Ay-43,989 galaxyEnaQ1Ay-43,1004 galaxyEnaQ1Ay-43,1024 galaxyEnaQ1Ba-1-17,66 galaxyEnaQ1Ba-1-17,95 galaxyEnaQ1Ba-1-17,228 galaxyEnaQ1Ba-1-17,305 galaxyEnaQ1Ba-1-17,474 galaxyEnaQ1Ba-1-17,731 galaxyEnaQ1Ba-1-17,922 galaxyEnaQ1Ba-1-17,957 galaxyEnaQ1Ba-1-17,989 galaxyEnaQ1Ba-1-17,1004 galaxyEnaQ1Ba-1-17,1024 galaxyEnaQ2Ay-120,66 galaxyEnaQ2Ay-120,95 galaxyEnaQ2Ay-120,228 galaxyEnaQ2Ay-120,305 galaxyEnaQ2Ay-120,474 galaxyEnaQ2Ay-120,731 galaxyEnaQ2Ay-120,922 galaxyEnaQ2Ay-120,957 galaxyEnaQ2Ay-120,989 galaxyEnaQ2Ay-120,1004 galaxyEnaQ2Ay-120,1024 galaxyEnaQ2Ay-122,66 galaxyEnaQ2Ay-122,95 galaxyEnaQ2Ay-122,228 galaxyEnaQ2Ay-122,305 galaxyEnaQ2Ay-122,474 galaxyEnaQ2Ay-122,731 galaxyEnaQ2Ay-122,922 galaxyEnaQ2Ay-122,957 galaxyEnaQ2Ay-122,989 galaxyEnaQ2Ay-122,1004 galaxyEnaQ2Ay-122,1024 galaxyEnaQ2Ay-4,66 galaxyEnaQ2Ay-4,95 galaxyEnaQ2Ay-4,228 galaxyEnaQ2Ay-4,305 galaxyEnaQ2Ay-4,474 galaxyEnaQ2Ay-4,731 galaxyEnaQ2Ay-4,922 galaxyEnaQ2Ay-4,957 galaxyEnaQ2Ay-4,989 galaxyEnaQ2Ay-4,1004 galaxyEnaQ2Ay-4,1024 galaxyEnaQ2Ay-5,66 galaxyEnaQ2Ay-5,95 galaxyEnaQ2Ay-5,228 galaxyEnaQ2Ay-5,305 galaxyEnaQ2Ay-5,474 galaxyEnaQ2Ay-5,731 galaxyEnaQ2Ay-5,922 galaxyEnaQ2Ay-5,957 galaxyEnaQ2Ay-5,989 galaxyEnaQ2Ay-5,1004 galaxyEnaQ2Ay-5,1024 galaxyEnaQ2Ay-6,66 galaxyEnaQ2Ay-6,95 galaxyEnaQ2Ay-6,228 galaxyEnaQ2Ay-6,305 galaxyEnaQ2Ay-6,474 galaxyEnaQ2Ay-6,731 galaxyEnaQ2Ay-6,922 galaxyEnaQ2Ay-6,957 galaxyEnaQ2Ay-6,989 galaxyEnaQ2Ay-6,1004 galaxyEnaQ2Ay-6,1024 galaxyEnaQ3Ay-4,66 galaxyEnaQ3Ay-4,95 galaxyEnaQ3Ay-4,228 galaxyEnaQ3Ay-4,305 galaxyEnaQ3Ay-4,474 galaxyEnaQ3Ay-4,731 galaxyEnaQ3Ay-4,922 galaxyEnaQ3Ay-4,957 galaxyEnaQ3Ay-4,989 galaxyEnaQ3Ay-4,1004 galaxyEnaQ3Ay-4,1024 galaxyEnaQ3Ay-5,66 galaxyEnaQ3Ay-5,95 galaxyEnaQ3Ay-5,228 galaxyEnaQ3Ay-5,305 galaxyEnaQ3Ay-5,474 galaxyEnaQ3Ay-5,731 galaxyEnaQ3Ay-5,922 galaxyEnaQ3Ay-5,957 galaxyEnaQ3Ay-5,989 galaxyEnaQ3Ay-5,1004 galaxyEnaQ3Ay-5,1024 galaxyEnaQ3Ay-9,66 galaxyEnaQ3Ay-9,95 galaxyEnaQ3Ay-9,228 galaxyEnaQ3Ay-9,305 galaxyEnaQ3Ay-9,474 galaxyEnaQ3Ay-9,731 galaxyEnaQ3Ay-9,922 galaxyEnaQ3Ay-9,957 galaxyEnaQ3Ay-9,989 galaxyEnaQ3Ay-9,1004 galaxyEnaQ3Ay-9,1024 galaxyEnaQ3B-1-1-7,66 galaxyEnaQ3B-1-1-7,95 galaxyEnaQ3B-1-1-7,228 galaxyEnaQ3B-1-1-7,305 galaxyEnaQ3B-1-1-7,474 galaxyEnaQ3B-1-1-7,731 galaxyEnaQ3B-1-1-7,922 galaxyEnaQ3B-1-1-7,957 galaxyEnaQ3B-1-1-7,989 galaxyEnaQ3B-1-1-7,1004 galaxyEnaQ3B-1-1-7,1024 galaxyEnaQ3B-1-617-2,66 galaxyEnaQ3B-1-617-2,95 galaxyEnaQ3B-1-617-2,228 galaxyEnaQ3B-1-617-2,305 galaxyEnaQ3B-1-617-2,474 galaxyEnaQ3B-1-617-2,731 galaxyEnaQ3B-1-617-2,922 galaxyEnaQ3B-1-617-2,957 galaxyEnaQ3B-1-617-2,989 galaxyEnaQ3B-1-617-2,1004 galaxyEnaQ3B-1-617-2,1024 gap,23 gap,68 genscan,25 genscan,160 gold,25 gold,83 gold,100 gordon2,74 gordon2,95 gordon2,128 iedb,44 iedb,94 kimIvtCov,79 kimRnaMod,87 kimTranscripts,81 kimTranscripts,113 kimTranscripts,131 kimTranscripts,188 kimTranscripts,233 kimTranscripts,262 kimTranscripts,275 mccoy,249 mccoy,344 mccoy,353 mccoy,378 mccoy,484 mccoy,503 mccoy,534 mccoy,544 microdel,37 multiz7way,65 multiz7way,98 multiz7way,158 multiz7way,172 multiz7way,176 multiz7way,198 multiz7way,220 multiz7way,233 multiz7way,237 multiz7way,267 multiz7way,405 multiz7way,463 multiz7way,490 multiz7way,547 multiz7way,563 multiz7way,804 nextstrainClade,114 nextstrainClade,128 nextstrainClade,155 nextstrainClade,163 nextstrainFreq,140 nextstrainFreq,147 nextstrainFreq,155 nextstrainGene,98 nextstrainGene,105 nextstrainGene,113 nextstrainParsimony,297 nextstrainParsimony,304 nextstrainParsimony,312 nextstrainSamples,384 nextstrainSamples,417 nextstrainSamples,439 nextstrainSamples,445 nextstrainSamples,450 nextstrainSamples,508 nextstrainSamples,588 nextstrainSamples,608 nextstrainSamples,668 nextstrainSamples,702 nextstrainSamples,740 nextstrainSamples,804 pbm,99 pbm,174 pbm,188 pbm,283 pbmShanghai,73 pbmShanghai,156 pbmShanghai,341 pbmShanghai,400 pdb,56 pdb,68 phyloGenes,177 poranHla1,55 poranHla1,88 poranHla2,55 poranHla2,88 primers,61 primers,165 primers,189 problematicSites,9 problematicSites,132 problematicSites,168 problematicSites,255 problematicSites,266 problematicSites,336 problematicSites,370 pyle,53 pyle,75 rapid,56 rapid,108 rapid,163 rapid,204 rappuoli,256 rappuoli,351 rappuoli,360 rappuoli,385 rappuoli,491 rappuoli,510 rappuoli,541 rappuoli,551 recomb,169 resist,23 resist,67 resistPred,31 resistPred,50 rosettaMhc,191 rosettaMhc,201 rosettaMhc,259 rosettaMhc,291 rosettaMhc,320 sarsCov2Phylo,55 sarsCov2Phylo,101 sarsCov2Phylo,117 sarsCov2Phylo,138 sarsCov2Phylo,143 sarsCov2Phylo,388 sarsCov2Phylo,453 sarsCov2Phylo,475 sarsCov2Phylo,481 sarsCov2Phylo,525 sarsCov2Phylo,634 sarsCov2Phylo,659 sarsCov2Phylo,746 sarsCov2Phylo,781 sarsCov2Phylo,844 sarsCov2PhyloPub,69 sarsCov2PhyloPub,114 sarsCov2PhyloPub,130 sarsCov2PhyloPub,417 sarsCov2PhyloPub,482 sarsCov2PhyloPub,504 sarsCov2PhyloPub,510 sarsCov2PhyloPub,550 sarsCov2PhyloPub,658 sarsCov2PhyloPub,683 sarsCov2PhyloPub,801 sarsCov2PhyloPub,811 sarsCov2PhyloPub,1034 simpleRepeat,49 spikeMuts,86 spikeMuts,183 strainCons119way,24 strainCons119way,66 strainCons119way,157 strainCons119way,333 strainCons119way,347 strainCons119way,447 strainCons119way,507 strainCons119way,521 strainCons119way,525 strainCons119way,547 strainCons119way,569 strainCons119way,582 strainCons119way,586 strainCons119way,616 strainCons119way,747 strainCons119way,813 strainCons119way,840 strainCons119way,897 strainCons119way,913 strainCons119way,1675 strainCons119way,2081 strainCons119way,2087 strainCons119way,2143 strainCons119way,2161 strainCons44way,21 strainCons44way,105 strainCons44way,281 strainCons44way,295 strainCons44way,395 strainCons44way,455 strainCons44way,469 strainCons44way,473 strainCons44way,495 strainCons44way,517 strainCons44way,530 strainCons44way,534 strainCons44way,564 strainCons44way,695 strainCons44way,761 strainCons44way,788 strainCons44way,845 strainCons44way,861 strainCons44way,1270 strainCons44way,1676 strainCons44way,1682 strainCons44way,1738 strainCons44way,1756 swift,100 swift,142 targets,50 targets,115 transcriptome,73 transcriptome,105 transcriptome,123 transcriptome,235 treangen,23 treangen,100 treangen,280 unipCov2AliSwissprot,82 unipCov2Chain,44 unipCov2Chain,75 unipCov2Chain,97 unipCov2Chain,267 unipCov2Chain,313 unipCov2Chain,364 unipCov2Chain,388 unipCov2DisulfBond,40 unipCov2DisulfBond,71 unipCov2DisulfBond,93 unipCov2DisulfBond,263 unipCov2DisulfBond,309 unipCov2DisulfBond,360 unipCov2DisulfBond,384 unipCov2Domain,39 unipCov2Domain,70 unipCov2Domain,92 unipCov2Domain,262 unipCov2Domain,308 unipCov2Domain,359 unipCov2Domain,383 unipCov2Interest,54 unipCov2LocCytopl,39 unipCov2LocCytopl,70 unipCov2LocCytopl,92 unipCov2LocCytopl,262 unipCov2LocCytopl,308 unipCov2LocCytopl,359 unipCov2LocCytopl,383 unipCov2LocExtra,39 unipCov2LocExtra,70 unipCov2LocExtra,92 unipCov2LocExtra,262 unipCov2LocExtra,308 unipCov2LocExtra,359 unipCov2LocExtra,383 unipCov2LocSignal,40 unipCov2LocSignal,71 unipCov2LocSignal,93 unipCov2LocSignal,263 unipCov2LocSignal,309 unipCov2LocSignal,360 unipCov2LocSignal,384 unipCov2LocTransMemb,40 unipCov2LocTransMemb,71 unipCov2LocTransMemb,93 unipCov2LocTransMemb,263 unipCov2LocTransMemb,309 unipCov2LocTransMemb,360 unipCov2LocTransMemb,384 unipCov2Modif,43 unipCov2Modif,74 unipCov2Modif,96 unipCov2Modif,266 unipCov2Modif,312 unipCov2Modif,363 unipCov2Modif,387 unipCov2Mut,40 unipCov2Mut,71 unipCov2Mut,93 unipCov2Mut,263 unipCov2Mut,309 unipCov2Mut,360 unipCov2Mut,384 unipCov2Other,40 unipCov2Other,71 unipCov2Other,93 unipCov2Other,263 unipCov2Other,309 unipCov2Other,360 unipCov2Other,384 unipCov2Repeat,38 unipCov2Repeat,69 unipCov2Repeat,91 unipCov2Repeat,261 unipCov2Repeat,307 unipCov2Repeat,358 unipCov2Repeat,382 unipCov2Struct,42 unipCov2Struct,73 unipCov2Struct,95 unipCov2Struct,265 unipCov2Struct,311 unipCov2Struct,362 unipCov2Struct,386 vaccines,78 vaccines,136 vaccines,181 variantMuts,226 variantMuts,242 variantMuts,722 variantMuts,744 variantMuts,765 variantMuts,895 varskip,36 weizmanOrfs,241 areas cpgIslandExt,305 cpgIslandExtUnmasked,308 cpgIslandSuper,305 gc5BaseBw,37 argila Q0_tracks,1313 Q1_tracks,1315 Q2_tracks,1315 Q3_tracks,1315 galaxyEna,1315 galaxyEnaQ0Ba-1,1311 galaxyEnaQ0Ba-1-1,1311 galaxyEnaQ0Ba-1-1-11,1311 galaxyEnaQ0Ba-1-17,1311 galaxyEnaQ0Ba-2,1311 galaxyEnaQ1Ay-4,1311 galaxyEnaQ1Ay-4-2,1311 galaxyEnaQ1Ay-4-2-2,1311 galaxyEnaQ1Ay-43,1311 galaxyEnaQ1Ba-1-17,1311 galaxyEnaQ2Ay-120,1311 galaxyEnaQ2Ay-122,1311 galaxyEnaQ2Ay-4,1311 galaxyEnaQ2Ay-5,1311 galaxyEnaQ2Ay-6,1311 galaxyEnaQ3Ay-4,1311 galaxyEnaQ3Ay-5,1311 galaxyEnaQ3Ay-9,1311 galaxyEnaQ3B-1-1-7,1311 galaxyEnaQ3B-1-617-2,1311 arising recomb,125 arjun epitopes,307 arkal epitopes,306 arkin sarsCov2Phylo,1125 sarsCov2PhyloPub,1258 armenta rnaStructRangan,93 around PhyloCSF_smooth,279 PhyloCSFpower,294 Q0_tracks,1150 Q1_tracks,1152 Q2_tracks,1152 Q3_tracks,1152 galaxyEna,1152 galaxyEnaQ0Ba-1,1148 galaxyEnaQ0Ba-1-1,1148 galaxyEnaQ0Ba-1-1-11,1148 galaxyEnaQ0Ba-1-17,1148 galaxyEnaQ0Ba-2,1148 galaxyEnaQ1Ay-4,1148 galaxyEnaQ1Ay-4-2,1148 galaxyEnaQ1Ay-4-2-2,1148 galaxyEnaQ1Ay-43,1148 galaxyEnaQ1Ba-1-17,1148 galaxyEnaQ2Ay-120,1148 galaxyEnaQ2Ay-122,1148 galaxyEnaQ2Ay-4,1148 galaxyEnaQ2Ay-5,1148 galaxyEnaQ2Ay-6,1148 galaxyEnaQ3Ay-4,1148 galaxyEnaQ3Ay-5,1148 galaxyEnaQ3Ay-9,1148 galaxyEnaQ3B-1-1-7,1148 galaxyEnaQ3B-1-617-2,1148 sarsCov2PhyloPub,45 arrangement cpgIslandExt,67 cpgIslandExtUnmasked,70 cpgIslandSuper,67 array IgG_Z-score-_COVID-19_patients,89 IgM_Z-score-_COVID-19_patients,89 bpmIggCovidSum,3 bpmIggCovidSum,98 bpmIgmCovidSum,3 bpmIgmCovidSum,98 pbm,3 pbm,98 pbmShanghai,4 pbmShanghai,155 artefact problematicSites,357 artefacts Q0_tracks,466 Q1_tracks,468 Q2_tracks,468 Q3_tracks,468 galaxyEna,468 galaxyEnaQ0Ba-1,464 galaxyEnaQ0Ba-1-1,464 galaxyEnaQ0Ba-1-1-11,464 galaxyEnaQ0Ba-1-17,464 galaxyEnaQ0Ba-2,464 galaxyEnaQ1Ay-4,464 galaxyEnaQ1Ay-4-2,464 galaxyEnaQ1Ay-4-2-2,464 galaxyEnaQ1Ay-43,464 galaxyEnaQ1Ba-1-17,464 galaxyEnaQ2Ay-120,464 galaxyEnaQ2Ay-122,464 galaxyEnaQ2Ay-4,464 galaxyEnaQ2Ay-5,464 galaxyEnaQ2Ay-6,464 galaxyEnaQ3Ay-4,464 galaxyEnaQ3Ay-5,464 galaxyEnaQ3Ay-9,464 galaxyEnaQ3B-1-1-7,464 galaxyEnaQ3B-1-617-2,464 problematicSites,271 artic artic,1 artic,4 artic,21 artic,47 artic,56 articV4,1 articV4,4 articV4,21 articV4,50 articV4_1,1 articV4_1,4 articV4_1,21 articV4_1,61 kimIvtCov,103 artic.bb artic,158 varskip,164 article cd8escape,185 articles addgene,52 articv4.1.bb articV4_1,171 articv4.bb articV4,158 artifactually recomb,170 artiles vaccines,497 as Calu3_07hpi,70 IgG_Z-score-_COVID-19_patients,107 IgG_Z-score-_COVID-19_patients,172 IgG_Z-score-_COVID-19_patients,199 IgM_Z-score-_COVID-19_patients,107 IgM_Z-score-_COVID-19_patients,172 IgM_Z-score-_COVID-19_patients,199 ORFs,68 PhyloCSF_smooth,12 PhyloCSF_smooth,38 PhyloCSF_smooth,367 PhyloCSF_smooth,535 PhyloCSFpower,27 PhyloCSFpower,53 PhyloCSFpower,382 PhyloCSFpower,550 Q0_tracks,283 Q0_tracks,492 Q0_tracks,766 Q0_tracks,1273 Q1_tracks,285 Q1_tracks,494 Q1_tracks,768 Q1_tracks,1275 Q2_tracks,285 Q2_tracks,494 Q2_tracks,768 Q2_tracks,1275 Q3_tracks,285 Q3_tracks,494 Q3_tracks,768 Q3_tracks,1275 Starr_Bloom,249 Starr_Bloom_bind,243 Vero6_05hpi,70 Vero6_24hpi,70 abEscape,380 abEscape,398 abEscape,406 abEscape,450 abEscape,454 abEscape,836 augustusGene,77 augustusGene,79 bloomEscMabAvg,384 bloomEscMabAvg,402 bloomEscMabAvg,410 bloomEscMabAvg,454 bloomEscMabAvg,458 bloomEscMabAvg,840 bloomEscMax,390 bloomEscMax,408 bloomEscMax,416 bloomEscMax,460 bloomEscMax,464 bloomEscMax,846 bloomEscSerumAvg,385 bloomEscSerumAvg,403 bloomEscSerumAvg,411 bloomEscSerumAvg,455 bloomEscSerumAvg,459 bloomEscSerumAvg,841 bloomEscTop,388 bloomEscTop,406 bloomEscTop,414 bloomEscTop,458 bloomEscTop,462 bloomEscTop,844 bpmIggCovidSum,116 bpmIggCovidSum,181 bpmIggCovidSum,208 bpmIgmCovidSum,116 bpmIgmCovidSum,181 bpmIgmCovidSum,208 cas13Crispr,24 cas13Crispr,149 cas13Crispr,168 cas13Crispr,270 cas13Crispr,272 cas13Crispr,511 contacts,118 cpgIslandExt,165 cpgIslandExt,548 cpgIslandExt,550 cpgIslandExtUnmasked,168 cpgIslandExtUnmasked,551 cpgIslandExtUnmasked,553 cpgIslandSuper,165 cpgIslandSuper,548 cpgIslandSuper,550 crisprDet,78 crisprDet,151 crisprDet,153 epitopes,101 escape,387 escape,405 escape,413 escape,457 escape,461 escape,843 galaxyEna,285 galaxyEna,494 galaxyEna,768 galaxyEna,1275 galaxyEnaQ0Ba-1,281 galaxyEnaQ0Ba-1,490 galaxyEnaQ0Ba-1,764 galaxyEnaQ0Ba-1,1271 galaxyEnaQ0Ba-1-1,281 galaxyEnaQ0Ba-1-1,490 galaxyEnaQ0Ba-1-1,764 galaxyEnaQ0Ba-1-1,1271 galaxyEnaQ0Ba-1-1-11,281 galaxyEnaQ0Ba-1-1-11,490 galaxyEnaQ0Ba-1-1-11,764 galaxyEnaQ0Ba-1-1-11,1271 galaxyEnaQ0Ba-1-17,281 galaxyEnaQ0Ba-1-17,490 galaxyEnaQ0Ba-1-17,764 galaxyEnaQ0Ba-1-17,1271 galaxyEnaQ0Ba-2,281 galaxyEnaQ0Ba-2,490 galaxyEnaQ0Ba-2,764 galaxyEnaQ0Ba-2,1271 galaxyEnaQ1Ay-4,281 galaxyEnaQ1Ay-4,490 galaxyEnaQ1Ay-4,764 galaxyEnaQ1Ay-4,1271 galaxyEnaQ1Ay-4-2,281 galaxyEnaQ1Ay-4-2,490 galaxyEnaQ1Ay-4-2,764 galaxyEnaQ1Ay-4-2,1271 galaxyEnaQ1Ay-4-2-2,281 galaxyEnaQ1Ay-4-2-2,490 galaxyEnaQ1Ay-4-2-2,764 galaxyEnaQ1Ay-4-2-2,1271 galaxyEnaQ1Ay-43,281 galaxyEnaQ1Ay-43,490 galaxyEnaQ1Ay-43,764 galaxyEnaQ1Ay-43,1271 galaxyEnaQ1Ba-1-17,281 galaxyEnaQ1Ba-1-17,490 galaxyEnaQ1Ba-1-17,764 galaxyEnaQ1Ba-1-17,1271 galaxyEnaQ2Ay-120,281 galaxyEnaQ2Ay-120,490 galaxyEnaQ2Ay-120,764 galaxyEnaQ2Ay-120,1271 galaxyEnaQ2Ay-122,281 galaxyEnaQ2Ay-122,490 galaxyEnaQ2Ay-122,764 galaxyEnaQ2Ay-122,1271 galaxyEnaQ2Ay-4,281 galaxyEnaQ2Ay-4,490 galaxyEnaQ2Ay-4,764 galaxyEnaQ2Ay-4,1271 galaxyEnaQ2Ay-5,281 galaxyEnaQ2Ay-5,490 galaxyEnaQ2Ay-5,764 galaxyEnaQ2Ay-5,1271 galaxyEnaQ2Ay-6,281 galaxyEnaQ2Ay-6,490 galaxyEnaQ2Ay-6,764 galaxyEnaQ2Ay-6,1271 galaxyEnaQ3Ay-4,281 galaxyEnaQ3Ay-4,490 galaxyEnaQ3Ay-4,764 galaxyEnaQ3Ay-4,1271 galaxyEnaQ3Ay-5,281 galaxyEnaQ3Ay-5,490 galaxyEnaQ3Ay-5,764 galaxyEnaQ3Ay-5,1271 galaxyEnaQ3Ay-9,281 galaxyEnaQ3Ay-9,490 galaxyEnaQ3Ay-9,764 galaxyEnaQ3Ay-9,1271 galaxyEnaQ3B-1-1-7,281 galaxyEnaQ3B-1-1-7,490 galaxyEnaQ3B-1-1-7,764 galaxyEnaQ3B-1-1-7,1271 galaxyEnaQ3B-1-617-2,281 galaxyEnaQ3B-1-617-2,490 galaxyEnaQ3B-1-617-2,764 galaxyEnaQ3B-1-617-2,1271 gap,70 genscan,35 genscan,37 gordon2,159 gordon2,161 gordon2,195 gordon2,207 gordon2,231 iedb,23 kimIvtCov,118 kimIvtCov,138 kimNp,28 kimRnaMod,34 kimTranscripts,84 kimTranscripts,122 kimTranscripts,235 mccoy,380 mccoy,398 mccoy,406 mccoy,450 mccoy,454 mccoy,836 microdel,26 microdel,162 multiz7way,100 multiz7way,116 multiz7way,525 multiz7way,549 multiz7way,1043 ncbiGeneBGP,97 ncbiProducts,49 ncbiProducts,113 nextstrainClade,126 nextstrainFreq,92 nextstrainFreq,138 nextstrainFreq,327 nextstrainGene,96 nextstrainParsimony,105 nextstrainParsimony,258 nextstrainParsimony,295 nextstrainSamples,197 nextstrainSamples,448 nextstrainSamples,597 nextstrainSamples,606 nextstrainSamples,766 nextstrainSamples,819 pbm,116 pbm,181 pbm,208 pbmShanghai,136 pbmShanghai,173 pbmShanghai,292 phyloGenes,25 phyloGenes,118 phyloGenes,144 phyloGenes,217 phyloGenes,240 phyloGenes,270 phyloGenes,321 poranHla1,48 poranHla2,48 primers,85 primers,90 problematicSites,97 problematicSites,293 problematicSites,351 problematicSites,594 pyle,46 pyle,48 pyle,172 rapid,31 rappuoli,387 rappuoli,405 rappuoli,413 rappuoli,457 rappuoli,461 rappuoli,843 recomb,151 recomb,153 resistPred,139 resistPred,170 rfam,77 rnaStructRangan,28 rnaStructRangan,30 rosettaMhc,12 rosettaMhc,120 rosettaMhc,144 rosettaMhc,178 rosettaMhc,272 sarsCov2Phylo,616 sarsCov2Phylo,629 sarsCov2Phylo,631 sarsCov2Phylo,764 sarsCov2Phylo,1105 sarsCov2PhyloPub,643 sarsCov2PhyloPub,653 sarsCov2PhyloPub,655 sarsCov2PhyloPub,1223 spikeMuts,51 spikeMuts,53 spikeMuts,56 spikeMuts,185 spikeMuts,188 spikeMuts,219 spikeMuts,221 spikeMuts,275 strainCons119way,77 strainCons119way,223 strainCons119way,316 strainCons119way,318 strainCons119way,397 strainCons119way,449 strainCons119way,465 strainCons119way,766 strainCons119way,875 strainCons119way,899 strainCons119way,2421 strainCons44way,11 strainCons44way,171 strainCons44way,264 strainCons44way,266 strainCons44way,345 strainCons44way,397 strainCons44way,413 strainCons44way,714 strainCons44way,823 strainCons44way,847 strainCons44way,2016 strainCons44wayViewalign,10 strainCons44wayViewphastcons,12 strainCons44wayViewphyloP,11 strainName44way,11 targets,57 targets,94 targets,96 transcriptome,76 transcriptome,114 unipCov2AliSwissprot,329 unipCov2Chain,559 unipCov2DisulfBond,555 unipCov2Domain,554 unipCov2Interest,18 unipCov2Interest,235 unipCov2LocCytopl,554 unipCov2LocExtra,554 unipCov2LocSignal,555 unipCov2LocTransMemb,555 unipCov2Modif,558 unipCov2Mut,555 unipCov2Other,555 unipCov2Repeat,553 unipCov2Struct,557 vaccines,32 vaccines,45 vaccines,61 vaccines,198 vaccines,344 vaccines,419 variantMuts,36 variantMuts,171 variantMuts,449 variantMuts,470 variantMuts,491 variantMuts,524 variantMuts,542 variantMuts,561 variantMuts,907 variantMuts,1071 weizmanOrfs,76 windowmaskerSdust,18 as6526 strainCons44way,1072 asaf poranHla1,259 poranHla2,259 ascii IgG_Z-score-_COVID-19_patients,331 IgM_Z-score-_COVID-19_patients,331 artic,114 articV4,114 articV4_1,127 bpmIggCovidSum,340 bpmIgmCovidSum,340 cas13Crispr,399 contacts,327 kimRnaMod,161 kimTranscripts,378 ncbiGeneBGP,81 ncbiProducts,97 pbm,340 pbmShanghai,457 phyloGenes,375 poranHla1,188 poranHla2,188 rapid,268 swift,197 transcriptome,384 unipCov2AliSwissprot,313 unipCov2Chain,543 unipCov2DisulfBond,539 unipCov2Domain,538 unipCov2Interest,219 unipCov2LocCytopl,538 unipCov2LocExtra,538 unipCov2LocSignal,539 unipCov2LocTransMemb,539 unipCov2Modif,542 unipCov2Mut,539 unipCov2Other,539 unipCov2Repeat,537 unipCov2Struct,541 varskip,120 asia nextstrainSamples,875 asian poranHla1,31 poranHla2,31 assay swift,25 assayed abEscape,38 abEscape,397 bloomEscMabAvg,42 bloomEscMabAvg,401 bloomEscMax,48 bloomEscMax,407 bloomEscSerumAvg,43 bloomEscSerumAvg,402 bloomEscTop,46 bloomEscTop,405 escape,45 escape,404 mccoy,38 mccoy,397 rappuoli,45 rappuoli,404 assays cd8escape,151 cd8escape,172 iedb,43 iedb,89 primers,195 assemblies augustusGene,196 augustusGene,237 vaccines,515 assembly PhyloCSF_smooth,403 PhyloCSFpower,418 augustusGene,197 gap,19 gap,21 gap,28 gap,37 gap,45 gap,116 gold,1 gold,2 gold,21 gold,23 gold,30 gold,39 gold,44 multiz7way,37 multiz7way,82 ncbiGeneBGP,25 ncbiProducts,28 strainCons119way,60 strainCons119way,61 strainCons44way,56 ucscToINSDC,40 ucscToRefSeq,34 assembly.2bit cpgIslandExt,412 cpgIslandExtUnmasked,415 cpgIslandSuper,412 assign pbmShanghai,257 assigned IgG_Z-score-_COVID-19_patients,135 IgG_Z-score-_COVID-19_patients,149 IgM_Z-score-_COVID-19_patients,135 IgM_Z-score-_COVID-19_patients,149 Q0_tracks,746 Q1_tracks,748 Q2_tracks,748 Q3_tracks,748 bpmIggCovidSum,144 bpmIggCovidSum,158 bpmIgmCovidSum,144 bpmIgmCovidSum,158 galaxyEna,748 galaxyEnaQ0Ba-1,744 galaxyEnaQ0Ba-1-1,744 galaxyEnaQ0Ba-1-1-11,744 galaxyEnaQ0Ba-1-17,744 galaxyEnaQ0Ba-2,744 galaxyEnaQ1Ay-4,744 galaxyEnaQ1Ay-4-2,744 galaxyEnaQ1Ay-4-2-2,744 galaxyEnaQ1Ay-43,744 galaxyEnaQ1Ba-1-17,744 galaxyEnaQ2Ay-120,744 galaxyEnaQ2Ay-122,744 galaxyEnaQ2Ay-4,744 galaxyEnaQ2Ay-5,744 galaxyEnaQ2Ay-6,744 galaxyEnaQ3Ay-4,744 galaxyEnaQ3Ay-5,744 galaxyEnaQ3Ay-9,744 galaxyEnaQ3B-1-1-7,744 galaxyEnaQ3B-1-617-2,744 pbm,144 pbm,158 pbmShanghai,221 strainCons119way,334 strainCons119way,348 strainCons119way,2103 strainCons44way,282 strainCons44way,296 strainCons44way,1698 variantMuts,235 assignment Q0_tracks,1034 Q1_tracks,1036 Q2_tracks,1036 Q3_tracks,1036 galaxyEna,1036 galaxyEnaQ0Ba-1,1032 galaxyEnaQ0Ba-1-1,1032 galaxyEnaQ0Ba-1-1-11,1032 galaxyEnaQ0Ba-1-17,1032 galaxyEnaQ0Ba-2,1032 galaxyEnaQ1Ay-4,1032 galaxyEnaQ1Ay-4-2,1032 galaxyEnaQ1Ay-4-2-2,1032 galaxyEnaQ1Ay-43,1032 galaxyEnaQ1Ba-1-17,1032 galaxyEnaQ2Ay-120,1032 galaxyEnaQ2Ay-122,1032 galaxyEnaQ2Ay-4,1032 galaxyEnaQ2Ay-5,1032 galaxyEnaQ2Ay-6,1032 galaxyEnaQ3Ay-4,1032 galaxyEnaQ3Ay-5,1032 galaxyEnaQ3Ay-9,1032 galaxyEnaQ3B-1-1-7,1032 galaxyEnaQ3B-1-617-2,1032 assignments Q0_tracks,225 Q1_tracks,227 Q2_tracks,227 Q3_tracks,227 galaxyEna,227 galaxyEnaQ0Ba-1,223 galaxyEnaQ0Ba-1-1,223 galaxyEnaQ0Ba-1-1-11,223 galaxyEnaQ0Ba-1-17,223 galaxyEnaQ0Ba-2,223 galaxyEnaQ1Ay-4,223 galaxyEnaQ1Ay-4-2,223 galaxyEnaQ1Ay-4-2-2,223 galaxyEnaQ1Ay-43,223 galaxyEnaQ1Ba-1-17,223 galaxyEnaQ2Ay-120,223 galaxyEnaQ2Ay-122,223 galaxyEnaQ2Ay-4,223 galaxyEnaQ2Ay-5,223 galaxyEnaQ2Ay-6,223 galaxyEnaQ3Ay-4,223 galaxyEnaQ3Ay-5,223 galaxyEnaQ3Ay-9,223 galaxyEnaQ3B-1-1-7,223 galaxyEnaQ3B-1-617-2,223 assist sarsCov2Phylo,960 sarsCov2PhyloPub,1080 variantMuts,1267 assistance primers,366 rnaStructRangan,97 associated Q0_tracks,396 Q0_tracks,565 Q1_tracks,398 Q1_tracks,567 Q2_tracks,398 Q2_tracks,567 Q3_tracks,398 Q3_tracks,567 cpgIslandExt,18 cpgIslandExt,38 cpgIslandExt,510 cpgIslandExtUnmasked,21 cpgIslandExtUnmasked,41 cpgIslandExtUnmasked,513 cpgIslandSuper,18 cpgIslandSuper,38 cpgIslandSuper,510 galaxyEna,398 galaxyEna,567 galaxyEnaQ0Ba-1,394 galaxyEnaQ0Ba-1,563 galaxyEnaQ0Ba-1-1,394 galaxyEnaQ0Ba-1-1,563 galaxyEnaQ0Ba-1-1-11,394 galaxyEnaQ0Ba-1-1-11,563 galaxyEnaQ0Ba-1-17,394 galaxyEnaQ0Ba-1-17,563 galaxyEnaQ0Ba-2,394 galaxyEnaQ0Ba-2,563 galaxyEnaQ1Ay-4,394 galaxyEnaQ1Ay-4,563 galaxyEnaQ1Ay-4-2,394 galaxyEnaQ1Ay-4-2,563 galaxyEnaQ1Ay-4-2-2,394 galaxyEnaQ1Ay-4-2-2,563 galaxyEnaQ1Ay-43,394 galaxyEnaQ1Ay-43,563 galaxyEnaQ1Ba-1-17,394 galaxyEnaQ1Ba-1-17,563 galaxyEnaQ2Ay-120,394 galaxyEnaQ2Ay-120,563 galaxyEnaQ2Ay-122,394 galaxyEnaQ2Ay-122,563 galaxyEnaQ2Ay-4,394 galaxyEnaQ2Ay-4,563 galaxyEnaQ2Ay-5,394 galaxyEnaQ2Ay-5,563 galaxyEnaQ2Ay-6,394 galaxyEnaQ2Ay-6,563 galaxyEnaQ3Ay-4,394 galaxyEnaQ3Ay-4,563 galaxyEnaQ3Ay-5,394 galaxyEnaQ3Ay-5,563 galaxyEnaQ3Ay-9,394 galaxyEnaQ3Ay-9,563 galaxyEnaQ3B-1-1-7,394 galaxyEnaQ3B-1-1-7,563 galaxyEnaQ3B-1-617-2,394 galaxyEnaQ3B-1-617-2,563 gc5BaseBw,34 potPathoIndel,71 potPathoIndel,90 sarsCov2Phylo,107 sarsCov2Phylo,692 sarsCov2PhyloPub,120 sarsCov2PhyloPub,799 simpleRepeat,51 spikeMuts,82 strainCons119way,2127 strainCons44way,1722 associates ucscToINSDC,16 ucscToRefSeq,11 assumption recomb,106 astray problematicSites,36 asu contacts,221 asymmetric contacts,219 at Calu3_07hpi,158 IgG_Z-score-_COVID-19_patients,435 IgM_Z-score-_COVID-19_patients,435 ORFs,156 PhyloCSF_smooth,188 PhyloCSF_smooth,257 PhyloCSFpower,203 PhyloCSFpower,272 Q0_tracks,35 Q0_tracks,481 Q0_tracks,590 Q0_tracks,740 Q0_tracks,1121 Q1_tracks,37 Q1_tracks,483 Q1_tracks,592 Q1_tracks,742 Q1_tracks,1123 Q2_tracks,37 Q2_tracks,483 Q2_tracks,592 Q2_tracks,742 Q2_tracks,1123 Q3_tracks,37 Q3_tracks,483 Q3_tracks,592 Q3_tracks,742 Q3_tracks,1123 Starr_Bloom,153 Starr_Bloom_bind,147 Vero6_05hpi,158 Vero6_24hpi,158 abEscape,283 bloomEscMabAvg,287 bloomEscMax,293 bloomEscSerumAvg,288 bloomEscTop,291 bpmIggCovidSum,444 bpmIgmCovidSum,444 cas13Crispr,120 cas13Crispr,486 contacts,83 contacts,161 cpgIslandExt,155 cpgIslandExt,218 cpgIslandExt,235 cpgIslandExtUnmasked,158 cpgIslandExtUnmasked,221 cpgIslandExtUnmasked,238 cpgIslandSuper,155 cpgIslandSuper,218 cpgIslandSuper,235 escape,290 galaxyEna,37 galaxyEna,483 galaxyEna,592 galaxyEna,742 galaxyEna,1123 galaxyEnaQ0Ba-1,33 galaxyEnaQ0Ba-1,479 galaxyEnaQ0Ba-1,588 galaxyEnaQ0Ba-1,738 galaxyEnaQ0Ba-1,1119 galaxyEnaQ0Ba-1-1,33 galaxyEnaQ0Ba-1-1,479 galaxyEnaQ0Ba-1-1,588 galaxyEnaQ0Ba-1-1,738 galaxyEnaQ0Ba-1-1,1119 galaxyEnaQ0Ba-1-1-11,33 galaxyEnaQ0Ba-1-1-11,479 galaxyEnaQ0Ba-1-1-11,588 galaxyEnaQ0Ba-1-1-11,738 galaxyEnaQ0Ba-1-1-11,1119 galaxyEnaQ0Ba-1-17,33 galaxyEnaQ0Ba-1-17,479 galaxyEnaQ0Ba-1-17,588 galaxyEnaQ0Ba-1-17,738 galaxyEnaQ0Ba-1-17,1119 galaxyEnaQ0Ba-2,33 galaxyEnaQ0Ba-2,479 galaxyEnaQ0Ba-2,588 galaxyEnaQ0Ba-2,738 galaxyEnaQ0Ba-2,1119 galaxyEnaQ1Ay-4,33 galaxyEnaQ1Ay-4,479 galaxyEnaQ1Ay-4,588 galaxyEnaQ1Ay-4,738 galaxyEnaQ1Ay-4,1119 galaxyEnaQ1Ay-4-2,33 galaxyEnaQ1Ay-4-2,479 galaxyEnaQ1Ay-4-2,588 galaxyEnaQ1Ay-4-2,738 galaxyEnaQ1Ay-4-2,1119 galaxyEnaQ1Ay-4-2-2,33 galaxyEnaQ1Ay-4-2-2,479 galaxyEnaQ1Ay-4-2-2,588 galaxyEnaQ1Ay-4-2-2,738 galaxyEnaQ1Ay-4-2-2,1119 galaxyEnaQ1Ay-43,33 galaxyEnaQ1Ay-43,479 galaxyEnaQ1Ay-43,588 galaxyEnaQ1Ay-43,738 galaxyEnaQ1Ay-43,1119 galaxyEnaQ1Ba-1-17,33 galaxyEnaQ1Ba-1-17,479 galaxyEnaQ1Ba-1-17,588 galaxyEnaQ1Ba-1-17,738 galaxyEnaQ1Ba-1-17,1119 galaxyEnaQ2Ay-120,33 galaxyEnaQ2Ay-120,479 galaxyEnaQ2Ay-120,588 galaxyEnaQ2Ay-120,738 galaxyEnaQ2Ay-120,1119 galaxyEnaQ2Ay-122,33 galaxyEnaQ2Ay-122,479 galaxyEnaQ2Ay-122,588 galaxyEnaQ2Ay-122,738 galaxyEnaQ2Ay-122,1119 galaxyEnaQ2Ay-4,33 galaxyEnaQ2Ay-4,479 galaxyEnaQ2Ay-4,588 galaxyEnaQ2Ay-4,738 galaxyEnaQ2Ay-4,1119 galaxyEnaQ2Ay-5,33 galaxyEnaQ2Ay-5,479 galaxyEnaQ2Ay-5,588 galaxyEnaQ2Ay-5,738 galaxyEnaQ2Ay-5,1119 galaxyEnaQ2Ay-6,33 galaxyEnaQ2Ay-6,479 galaxyEnaQ2Ay-6,588 galaxyEnaQ2Ay-6,738 galaxyEnaQ2Ay-6,1119 galaxyEnaQ3Ay-4,33 galaxyEnaQ3Ay-4,479 galaxyEnaQ3Ay-4,588 galaxyEnaQ3Ay-4,738 galaxyEnaQ3Ay-4,1119 galaxyEnaQ3Ay-5,33 galaxyEnaQ3Ay-5,479 galaxyEnaQ3Ay-5,588 galaxyEnaQ3Ay-5,738 galaxyEnaQ3Ay-5,1119 galaxyEnaQ3Ay-9,33 galaxyEnaQ3Ay-9,479 galaxyEnaQ3Ay-9,588 galaxyEnaQ3Ay-9,738 galaxyEnaQ3Ay-9,1119 galaxyEnaQ3B-1-1-7,33 galaxyEnaQ3B-1-1-7,479 galaxyEnaQ3B-1-1-7,588 galaxyEnaQ3B-1-1-7,738 galaxyEnaQ3B-1-1-7,1119 galaxyEnaQ3B-1-617-2,33 galaxyEnaQ3B-1-617-2,479 galaxyEnaQ3B-1-617-2,588 galaxyEnaQ3B-1-617-2,738 galaxyEnaQ3B-1-617-2,1119 kimNp,97 mccoy,283 microdel,42 microdel,50 microdel,58 microdel,209 microdel,226 microdel,297 multiz7way,304 multiz7way,358 multiz7way,439 multiz7way,766 multiz7way,860 multiz7way,868 multiz7way,872 multiz7way,882 multiz7way,928 ncbiGeneBGP,174 ncbiProducts,190 nextstrainFreq,340 nextstrainParsimony,125 nextstrainSamples,133 nextstrainSamples,247 nextstrainSamples,254 nextstrainSamples,313 nextstrainSamples,394 nextstrainSamples,419 nextstrainSamples,792 pbm,444 pbmShanghai,76 pbmShanghai,103 pbmShanghai,306 pbmShanghai,323 pbmShanghai,332 pdb,40 pdb,123 phyloGenes,258 phyloGenes,289 primers,99 problematicSites,225 publicAnnots,24 publicAnnots,79 pyle,24 pyle,197 rappuoli,290 resist,45 resist,149 resistPred,132 resistPred,136 resistPred,180 resistPred,241 rfam,180 rnaStructRangan,37 rnaStructRangan,47 rosettaMhc,376 rosettaMhc,389 sarsCov2Phylo,50 sarsCov2Phylo,119 sarsCov2Phylo,318 sarsCov2Phylo,398 sarsCov2Phylo,455 sarsCov2Phylo,517 sarsCov2PhyloFull,13 sarsCov2PhyloPub,64 sarsCov2PhyloPub,132 sarsCov2PhyloPub,325 sarsCov2PhyloPub,427 sarsCov2PhyloPub,484 sarsCov2PhyloPub,542 sarsCov2PhyloPubAllFull,13 spikeMuts,107 strainCons119way,214 strainCons119way,241 strainCons119way,282 strainCons119way,647 strainCons119way,700 strainCons119way,789 strainCons119way,1526 strainCons119way,1693 strainCons119way,1809 strainCons119way,1857 strainCons119way,1916 strainCons119way,2012 strainCons119way,2047 strainCons119way,2238 strainCons119way,2246 strainCons119way,2250 strainCons119way,2260 strainCons119way,2306 strainCons44way,162 strainCons44way,189 strainCons44way,230 strainCons44way,595 strainCons44way,648 strainCons44way,737 strainCons44way,1196 strainCons44way,1288 strainCons44way,1404 strainCons44way,1452 strainCons44way,1511 strainCons44way,1607 strainCons44way,1642 strainCons44way,1833 strainCons44way,1841 strainCons44way,1845 strainCons44way,1855 strainCons44way,1901 targets,106 transcriptome,299 treangen,244 ucscToINSDC,3 unipCov2AliSwissprot,408 unipCov2AliSwissprot,447 unipCov2Chain,638 unipCov2Chain,676 unipCov2DisulfBond,634 unipCov2DisulfBond,672 unipCov2Domain,633 unipCov2Domain,671 unipCov2Interest,291 unipCov2Interest,330 unipCov2LocCytopl,633 unipCov2LocCytopl,671 unipCov2LocExtra,633 unipCov2LocExtra,671 unipCov2LocSignal,634 unipCov2LocSignal,672 unipCov2LocTransMemb,634 unipCov2LocTransMemb,672 unipCov2Modif,637 unipCov2Modif,675 unipCov2Mut,634 unipCov2Mut,672 unipCov2Other,634 unipCov2Other,672 unipCov2Repeat,632 unipCov2Repeat,670 unipCov2Struct,636 unipCov2Struct,674 vaccines,151 vaccines,371 variantMuts,177 variantMuts,877 variantMuts,881 variantMuts,923 variantMuts,927 variantMuts,1098 variantMuts,1117 variantMuts,1193 variantMuts,1215 variantMuts,1230 weizmanOrfs,164 atcc multiz7way,714 strainCons119way,1357 atoms contacts,169 contacts,201 contacts,207 contacts,224 attempts problematicSites,17 attenuate abEscape,817 bloomEscMabAvg,821 bloomEscMax,827 bloomEscSerumAvg,822 bloomEscTop,825 escape,824 mccoy,817 rappuoli,824 attenuation vaccines,577 aug multiz7way,1071 phyloGenes,262 sarsCov2Phylo,1014 sarsCov2PhyloPub,1134 strainCons119way,2449 strainCons44way,2044 variantMuts,445 variantMuts,618 augustine cas13Crispr,480 cas13Crispr,503 augustus augustusGene,1 augustusGene,2 augustusGene,22 augustusGene,148 augustusGene,256 auml windowmaskerSdust,95 auslander potPathoIndel,209 australia strainCons119way,1174 variantMuts,1195 austria cd8escape,144 author nextstrainSamples,708 nextstrainSamples,970 pyle,250 sarsCov2Phylo,920 sarsCov2PhyloPub,864 authors Starr_Bloom,45 Starr_Bloom,152 Starr_Bloom,165 Starr_Bloom_bind,42 Starr_Bloom_bind,146 Starr_Bloom_bind,159 abEscape,253 bloomEscMabAvg,257 bloomEscMax,263 bloomEscSerumAvg,258 bloomEscTop,261 escape,260 gordon2,37 mccoy,253 nextstrainFreq,306 nextstrainFreq,348 nextstrainSamples,958 pbmShanghai,363 pond,71 pyle,37 pyle,189 rappuoli,260 sarsCov2Phylo,908 sarsCov2PhyloPub,925 sarsCov2PhyloPub,1014 sarsCov2PhyloPub,1026 targets,34 targets,78 auto cas13Crispr,229 autocorrelated strainCons119way,1908 strainCons44way,1503 automated IgG_Z-score-_COVID-19_patients,305 IgM_Z-score-_COVID-19_patients,305 artic,88 articV4,88 articV4_1,101 bpmIggCovidSum,314 bpmIgmCovidSum,314 cas13Crispr,373 contacts,301 kimRnaMod,135 kimTranscripts,352 ncbiGeneBGP,57 ncbiProducts,73 nextstrainClade,159 nextstrainFreq,151 nextstrainGene,109 nextstrainParsimony,308 nextstrainSamples,639 pbm,314 pbmShanghai,431 phyloGenes,349 poranHla1,162 poranHla2,162 publicAnnots,47 rapid,242 resist,101 resistPred,193 spikeMuts,310 swift,171 transcriptome,358 unipCov2AliSwissprot,278 unipCov2Chain,508 unipCov2DisulfBond,504 unipCov2Domain,503 unipCov2Interest,184 unipCov2LocCytopl,503 unipCov2LocExtra,503 unipCov2LocSignal,504 unipCov2LocTransMemb,504 unipCov2Modif,507 unipCov2Mut,504 unipCov2Other,504 unipCov2Repeat,502 unipCov2Struct,506 varskip,94 automation Q0_tracks,1161 Q1_tracks,1163 Q2_tracks,1163 Q3_tracks,1163 galaxyEna,1163 galaxyEnaQ0Ba-1,1159 galaxyEnaQ0Ba-1-1,1159 galaxyEnaQ0Ba-1-1-11,1159 galaxyEnaQ0Ba-1-17,1159 galaxyEnaQ0Ba-2,1159 galaxyEnaQ1Ay-4,1159 galaxyEnaQ1Ay-4-2,1159 galaxyEnaQ1Ay-4-2-2,1159 galaxyEnaQ1Ay-43,1159 galaxyEnaQ1Ba-1-17,1159 galaxyEnaQ2Ay-120,1159 galaxyEnaQ2Ay-122,1159 galaxyEnaQ2Ay-4,1159 galaxyEnaQ2Ay-5,1159 galaxyEnaQ2Ay-6,1159 galaxyEnaQ3Ay-4,1159 galaxyEnaQ3Ay-5,1159 galaxyEnaQ3Ay-9,1159 galaxyEnaQ3B-1-1-7,1159 galaxyEnaQ3B-1-617-2,1159 automz multiz7way,739 strainCons119way,1499 strainCons44way,1169 av unipCov2AliSwissprot,471 unipCov2Chain,700 unipCov2DisulfBond,696 unipCov2Domain,695 unipCov2Interest,354 unipCov2LocCytopl,695 unipCov2LocExtra,695 unipCov2LocSignal,696 unipCov2LocTransMemb,696 unipCov2Modif,699 unipCov2Mut,696 unipCov2Other,696 unipCov2Repeat,694 unipCov2Struct,698 available PhyloCSF_smooth,227 PhyloCSFpower,242 Q0_tracks,151 Q0_tracks,197 Q0_tracks,267 Q0_tracks,1199 Q1_tracks,153 Q1_tracks,199 Q1_tracks,269 Q1_tracks,1201 Q2_tracks,153 Q2_tracks,199 Q2_tracks,269 Q2_tracks,1201 Q3_tracks,153 Q3_tracks,199 Q3_tracks,269 Q3_tracks,1201 Starr_Bloom,162 Starr_Bloom_bind,156 abEscape,250 addgene,34 addgene,82 augustusGene,239 bloomEscMabAvg,254 bloomEscMax,260 bloomEscSerumAvg,255 bloomEscTop,258 cpgIslandExt,543 cpgIslandExtUnmasked,546 cpgIslandSuper,543 epitopes,211 epitopes,225 escape,257 galaxyEna,153 galaxyEna,199 galaxyEna,269 galaxyEna,1201 galaxyEnaQ0Ba-1,149 galaxyEnaQ0Ba-1,195 galaxyEnaQ0Ba-1,265 galaxyEnaQ0Ba-1,1197 galaxyEnaQ0Ba-1-1,149 galaxyEnaQ0Ba-1-1,195 galaxyEnaQ0Ba-1-1,265 galaxyEnaQ0Ba-1-1,1197 galaxyEnaQ0Ba-1-1-11,149 galaxyEnaQ0Ba-1-1-11,195 galaxyEnaQ0Ba-1-1-11,265 galaxyEnaQ0Ba-1-1-11,1197 galaxyEnaQ0Ba-1-17,149 galaxyEnaQ0Ba-1-17,195 galaxyEnaQ0Ba-1-17,265 galaxyEnaQ0Ba-1-17,1197 galaxyEnaQ0Ba-2,149 galaxyEnaQ0Ba-2,195 galaxyEnaQ0Ba-2,265 galaxyEnaQ0Ba-2,1197 galaxyEnaQ1Ay-4,149 galaxyEnaQ1Ay-4,195 galaxyEnaQ1Ay-4,265 galaxyEnaQ1Ay-4,1197 galaxyEnaQ1Ay-4-2,149 galaxyEnaQ1Ay-4-2,195 galaxyEnaQ1Ay-4-2,265 galaxyEnaQ1Ay-4-2,1197 galaxyEnaQ1Ay-4-2-2,149 galaxyEnaQ1Ay-4-2-2,195 galaxyEnaQ1Ay-4-2-2,265 galaxyEnaQ1Ay-4-2-2,1197 galaxyEnaQ1Ay-43,149 galaxyEnaQ1Ay-43,195 galaxyEnaQ1Ay-43,265 galaxyEnaQ1Ay-43,1197 galaxyEnaQ1Ba-1-17,149 galaxyEnaQ1Ba-1-17,195 galaxyEnaQ1Ba-1-17,265 galaxyEnaQ1Ba-1-17,1197 galaxyEnaQ2Ay-120,149 galaxyEnaQ2Ay-120,195 galaxyEnaQ2Ay-120,265 galaxyEnaQ2Ay-120,1197 galaxyEnaQ2Ay-122,149 galaxyEnaQ2Ay-122,195 galaxyEnaQ2Ay-122,265 galaxyEnaQ2Ay-122,1197 galaxyEnaQ2Ay-4,149 galaxyEnaQ2Ay-4,195 galaxyEnaQ2Ay-4,265 galaxyEnaQ2Ay-4,1197 galaxyEnaQ2Ay-5,149 galaxyEnaQ2Ay-5,195 galaxyEnaQ2Ay-5,265 galaxyEnaQ2Ay-5,1197 galaxyEnaQ2Ay-6,149 galaxyEnaQ2Ay-6,195 galaxyEnaQ2Ay-6,265 galaxyEnaQ2Ay-6,1197 galaxyEnaQ3Ay-4,149 galaxyEnaQ3Ay-4,195 galaxyEnaQ3Ay-4,265 galaxyEnaQ3Ay-4,1197 galaxyEnaQ3Ay-5,149 galaxyEnaQ3Ay-5,195 galaxyEnaQ3Ay-5,265 galaxyEnaQ3Ay-5,1197 galaxyEnaQ3Ay-9,149 galaxyEnaQ3Ay-9,195 galaxyEnaQ3Ay-9,265 galaxyEnaQ3Ay-9,1197 galaxyEnaQ3B-1-1-7,149 galaxyEnaQ3B-1-1-7,195 galaxyEnaQ3B-1-1-7,265 galaxyEnaQ3B-1-1-7,1197 galaxyEnaQ3B-1-617-2,149 galaxyEnaQ3B-1-617-2,195 galaxyEnaQ3B-1-617-2,265 galaxyEnaQ3B-1-617-2,1197 kimTranscripts,132 mccoy,250 multiz7way,268 multiz7way,508 multiz7way,534 multiz7way,805 ncbiGeneBGP,198 ncbiProducts,214 nextstrainFreq,307 nextstrainSamples,741 nextstrainSamples,777 nextstrainSamples,974 publicAnnots,23 pyle,76 rapid,205 rappuoli,257 resistPred,262 rosettaMhc,67 rosettaMhc,113 rosettaMhc,130 rosettaMhc,192 rosettaMhc,322 sarsCov2Phylo,139 sarsCov2Phylo,577 sarsCov2Phylo,754 sarsCov2Phylo,924 sarsCov2PhyloPub,29 sarsCov2PhyloPub,602 sarsCov2PhyloPub,812 spikeMuts,149 strainCons119way,25 strainCons119way,617 strainCons119way,755 strainCons119way,858 strainCons119way,884 strainCons44way,22 strainCons44way,565 strainCons44way,703 strainCons44way,806 strainCons44way,832 swift,143 targets,116 transcriptome,124 treangen,281 unipCov2AliSwissprot,437 unipCov2Chain,666 unipCov2DisulfBond,662 unipCov2Domain,661 unipCov2Interest,320 unipCov2LocCytopl,661 unipCov2LocExtra,661 unipCov2LocSignal,662 unipCov2LocTransMemb,662 unipCov2Modif,665 unipCov2Mut,662 unipCov2Other,662 unipCov2Repeat,660 unipCov2Struct,664 variantMuts,83 variantMuts,859 windowmaskerSdust,40 average Starr_Bloom,185 Starr_Bloom_bind,179 abEscape,456 bloomEscMabAvg,3 bloomEscMabAvg,11 bloomEscMabAvg,460 bloomEscMax,466 bloomEscSerumAvg,3 bloomEscSerumAvg,12 bloomEscSerumAvg,461 bloomEscTop,464 escape,463 gordon2,169 mccoy,456 pond,100 pond,147 rappuoli,463 rosettaMhc,224 rosettaMhc,234 averaged nextstrainSamples,385 sarsCov2Phylo,389 sarsCov2Phylo,526 sarsCov2PhyloPub,418 sarsCov2PhyloPub,551 awk cpgIslandExt,424 cpgIslandExtUnmasked,427 cpgIslandSuper,424 axtchain multiz7way,669 multiz7way,877 strainCons119way,1018 strainCons119way,2255 strainCons44way,966 strainCons44way,1850 ay.120 galaxyEnaQ2Ay-120,1 galaxyEnaQ2Ay-120,8 ay.122 galaxyEnaQ2Ay-122,1 galaxyEnaQ2Ay-122,8 ay.4 galaxyEnaQ1Ay-4,1 galaxyEnaQ1Ay-4,8 galaxyEnaQ2Ay-4,1 galaxyEnaQ2Ay-4,8 galaxyEnaQ3Ay-4,1 galaxyEnaQ3Ay-4,8 ay.4.2 galaxyEnaQ1Ay-4-2,1 galaxyEnaQ1Ay-4-2,8 ay.4.2.2 galaxyEnaQ1Ay-4-2-2,1 galaxyEnaQ1Ay-4-2-2,8 ay.43 galaxyEnaQ1Ay-43,1 galaxyEnaQ1Ay-43,8 ay.5 galaxyEnaQ2Ay-5,1 galaxyEnaQ2Ay-5,8 galaxyEnaQ3Ay-5,1 galaxyEnaQ3Ay-5,8 ay.6 galaxyEnaQ2Ay-6,1 galaxyEnaQ2Ay-6,8 ay.9 galaxyEnaQ3Ay-9,1 galaxyEnaQ3Ay-9,8 ayal potPathoIndel,205 ayala recomb,330 b B_113Max,2 B_113Total,2 B_113Total,11 B_26Max,2 B_26Total,2 B_26Total,11 Q0_tracks,1251 Q0_tracks,1312 Q0_tracks,1332 Q1_tracks,1253 Q1_tracks,1314 Q1_tracks,1334 Q2_tracks,1253 Q2_tracks,1314 Q2_tracks,1334 Q3_tracks,1253 Q3_tracks,1314 Q3_tracks,1334 bCellEpitopes,1 bCellEpitopes,3 cd8escape,62 cd8escape,188 epitopes,21 epitopes,32 epitopes,271 epitopes,327 galaxyEna,1253 galaxyEna,1314 galaxyEna,1334 galaxyEnaQ0Ba-1,1249 galaxyEnaQ0Ba-1,1310 galaxyEnaQ0Ba-1,1330 galaxyEnaQ0Ba-1-1,1249 galaxyEnaQ0Ba-1-1,1310 galaxyEnaQ0Ba-1-1,1330 galaxyEnaQ0Ba-1-1-11,1249 galaxyEnaQ0Ba-1-1-11,1310 galaxyEnaQ0Ba-1-1-11,1330 galaxyEnaQ0Ba-1-17,1249 galaxyEnaQ0Ba-1-17,1310 galaxyEnaQ0Ba-1-17,1330 galaxyEnaQ0Ba-2,1249 galaxyEnaQ0Ba-2,1310 galaxyEnaQ0Ba-2,1330 galaxyEnaQ1Ay-4,1249 galaxyEnaQ1Ay-4,1310 galaxyEnaQ1Ay-4,1330 galaxyEnaQ1Ay-4-2,1249 galaxyEnaQ1Ay-4-2,1310 galaxyEnaQ1Ay-4-2,1330 galaxyEnaQ1Ay-4-2-2,1249 galaxyEnaQ1Ay-4-2-2,1310 galaxyEnaQ1Ay-4-2-2,1330 galaxyEnaQ1Ay-43,1249 galaxyEnaQ1Ay-43,1310 galaxyEnaQ1Ay-43,1330 galaxyEnaQ1Ba-1-17,1249 galaxyEnaQ1Ba-1-17,1310 galaxyEnaQ1Ba-1-17,1330 galaxyEnaQ2Ay-120,1249 galaxyEnaQ2Ay-120,1310 galaxyEnaQ2Ay-120,1330 galaxyEnaQ2Ay-122,1249 galaxyEnaQ2Ay-122,1310 galaxyEnaQ2Ay-122,1330 galaxyEnaQ2Ay-4,1249 galaxyEnaQ2Ay-4,1310 galaxyEnaQ2Ay-4,1330 galaxyEnaQ2Ay-5,1249 galaxyEnaQ2Ay-5,1310 galaxyEnaQ2Ay-5,1330 galaxyEnaQ2Ay-6,1249 galaxyEnaQ2Ay-6,1310 galaxyEnaQ2Ay-6,1330 galaxyEnaQ3Ay-4,1249 galaxyEnaQ3Ay-4,1310 galaxyEnaQ3Ay-4,1330 galaxyEnaQ3Ay-5,1249 galaxyEnaQ3Ay-5,1310 galaxyEnaQ3Ay-5,1330 galaxyEnaQ3Ay-9,1249 galaxyEnaQ3Ay-9,1310 galaxyEnaQ3Ay-9,1330 galaxyEnaQ3B-1-1-7,1249 galaxyEnaQ3B-1-1-7,1310 galaxyEnaQ3B-1-1-7,1330 galaxyEnaQ3B-1-617-2,1249 galaxyEnaQ3B-1-617-2,1310 galaxyEnaQ3B-1-617-2,1330 iedb,114 nextstrainClade,251 nextstrainFreq,386 nextstrainGene,200 nextstrainParsimony,453 nextstrainSamples,1006 pond,261 poranHla1,271 poranHla2,271 potPathoIndel,206 problematicSites,590 recomb,325 sarsCov2Phylo,1101 sarsCov2PhyloPub,1221 spikeMuts,359 spikeMuts,395 strainCons119way,2155 strainCons44way,1750 b.1.1 sarsCov2Phylo,303 sarsCov2PhyloPub,310 b.1.1.529 variantMuts,337 variantMuts,1116 b.1.1.7 galaxyEnaQ3B-1-1-7,1 galaxyEnaQ3B-1-1-7,8 variantAaMutsV2_B_1_1_7,6 variantMuts,186 variantMuts,196 variantMuts,269 variantMuts,1351 variantNucMutsV2_B_1_1_7,6 b.1.12 sarsCov2Phylo,286 sarsCov2PhyloPub,293 b.1.13 sarsCov2Phylo,271 sarsCov2PhyloPub,278 b.1.22 sarsCov2Phylo,272 sarsCov2Phylo,273 sarsCov2PhyloPub,279 sarsCov2PhyloPub,280 b.1.26 sarsCov2Phylo,287 sarsCov2PhyloPub,294 b.1.3 sarsCov2Phylo,285 sarsCov2PhyloPub,292 b.1.351 variantAaMutsV2_B_1_351,6 variantMuts,286 variantNucMutsV2_B_1_351,6 b.1.36 sarsCov2Phylo,274 sarsCov2PhyloPub,281 b.1.37 sarsCov2Phylo,275 sarsCov2PhyloPub,282 b.1.429 spikeMuts,269 variantAaMutsV2_B_1_429,6 variantMuts,659 variantNucMutsV2_B_1_429,6 b.1.5 sarsCov2Phylo,252 sarsCov2PhyloPub,259 b.1.525 variantAaMutsV2_B_1_525,6 variantMuts,675 variantNucMutsV2_B_1_525,6 b.1.526 variantAaMutsV2_B_1_526,6 variantMuts,690 variantNucMutsV2_B_1_526,6 b.1.6 sarsCov2Phylo,253 sarsCov2PhyloPub,260 b.1.617.1 variantAaMutsV2_B_1_617_1,6 variantMuts,706 variantNucMutsV2_B_1_617_1,6 b.1.617.2 galaxyEnaQ3B-1-617-2,1 galaxyEnaQ3B-1-617-2,8 variantAaMutsV2_B_1_617_2,6 variantMuts,321 variantNucMutsV2_B_1_617_2,6 b.1.621 variantAaMutsV2_B_1_621,6 variantMuts,644 variantNucMutsV2_B_1_621,6 b.1.8 sarsCov2Phylo,254 sarsCov2PhyloPub,261 b.1.9 sarsCov2Phylo,270 sarsCov2PhyloPub,277 b.1.n sarsCov2Phylo,256 sarsCov2Phylo,289 sarsCov2PhyloPub,263 sarsCov2PhyloPub,296 b.2 sarsCov2Phylo,238 sarsCov2PhyloPub,245 b.4 sarsCov2Phylo,210 sarsCov2PhyloPub,217 b.7 sarsCov2Phylo,211 sarsCov2PhyloPub,218 b.n sarsCov2Phylo,187 sarsCov2PhyloPub,194 b_113 B_113Max,10 b_26 B_26Max,10 ba.1 galaxyEnaQ0Ba-1,1 galaxyEnaQ0Ba-1,8 pond,285 variantAaMuts_B_1_1_529,2 variantAaMuts_B_1_1_529,6 variantMuts,338 variantMuts,1109 variantNucMuts_B_1_1_529,2 variantNucMuts_B_1_1_529,7 ba.1.1 galaxyEnaQ0Ba-1-1,1 galaxyEnaQ0Ba-1-1,8 ba.1.1.11 galaxyEnaQ0Ba-1-1-11,1 galaxyEnaQ0Ba-1-1-11,8 ba.1.17 galaxyEnaQ0Ba-1-17,1 galaxyEnaQ0Ba-1-17,8 galaxyEnaQ1Ba-1-17,1 galaxyEnaQ1Ba-1-17,8 ba.2 galaxyEnaQ0Ba-2,1 galaxyEnaQ0Ba-2,8 variantAaMuts_BA_2,2 variantAaMuts_BA_2,6 variantMuts,355 variantMuts,1134 variantNucMuts_BA_2,2 variantNucMuts_BA_2,7 ba.2.12.1 variantAaMuts_BA_2_12_1,2 variantAaMuts_BA_2_12_1,6 variantMuts,399 variantMuts,1135 variantNucMuts_BA_2_12_1,2 variantNucMuts_BA_2_12_1,7 ba.2.75 variantAaMuts_BA_2_75,2 variantAaMuts_BA_2_75,6 variantMuts,413 variantMuts,1136 variantNucMuts_BA_2_75,2 variantNucMuts_BA_2_75,7 ba.2.86 variantAaMuts_BA_2_86,2 variantAaMuts_BA_2_86,6 variantMuts,602 variantMuts,1155 variantNucMuts_BA_2_86,2 variantNucMuts_BA_2_86,7 ba.4 variantAaMuts_BA_4,2 variantAaMuts_BA_4,6 variantMuts,371 variantMuts,1124 variantNucMuts_BA_4,2 variantNucMuts_BA_4,7 ba.5 variantAaMuts_BA_5,2 variantAaMuts_BA_5,6 variantMuts,385 variantMuts,1126 variantNucMuts_BA_5,2 variantNucMuts_BA_5,7 back Q0_tracks,664 Q1_tracks,666 Q2_tracks,666 Q3_tracks,666 galaxyEna,666 galaxyEnaQ0Ba-1,662 galaxyEnaQ0Ba-1-1,662 galaxyEnaQ0Ba-1-1-11,662 galaxyEnaQ0Ba-1-17,662 galaxyEnaQ0Ba-2,662 galaxyEnaQ1Ay-4,662 galaxyEnaQ1Ay-4-2,662 galaxyEnaQ1Ay-4-2-2,662 galaxyEnaQ1Ay-43,662 galaxyEnaQ1Ba-1-17,662 galaxyEnaQ2Ay-120,662 galaxyEnaQ2Ay-122,662 galaxyEnaQ2Ay-4,662 galaxyEnaQ2Ay-5,662 galaxyEnaQ2Ay-6,662 galaxyEnaQ3Ay-4,662 galaxyEnaQ3Ay-5,662 galaxyEnaQ3Ay-9,662 galaxyEnaQ3B-1-1-7,662 galaxyEnaQ3B-1-617-2,662 background strainCons119way,1698 strainCons119way,1771 strainCons44way,1293 strainCons44way,1366 bacterial variantMuts,1036 baertsch augustusGene,290 multiz7way,1128 multiz7way,1179 multiz7way,1253 strainCons119way,2506 strainCons119way,2557 strainCons119way,2631 strainCons44way,2101 strainCons44way,2152 strainCons44way,2226 bairoch unipCov2AliSwissprot,478 unipCov2Chain,707 unipCov2DisulfBond,703 unipCov2Domain,702 unipCov2Interest,361 unipCov2LocCytopl,702 unipCov2LocExtra,702 unipCov2LocSignal,703 unipCov2LocTransMemb,703 unipCov2Modif,706 unipCov2Mut,703 unipCov2Other,703 unipCov2Repeat,701 unipCov2Struct,705 bait gordon2,197 baker Q0_tracks,1229 Q0_tracks,1317 Q1_tracks,1231 Q1_tracks,1319 Q2_tracks,1231 Q2_tracks,1319 Q3_tracks,1231 Q3_tracks,1319 galaxyEna,1231 galaxyEna,1319 galaxyEnaQ0Ba-1,1227 galaxyEnaQ0Ba-1,1315 galaxyEnaQ0Ba-1-1,1227 galaxyEnaQ0Ba-1-1,1315 galaxyEnaQ0Ba-1-1-11,1227 galaxyEnaQ0Ba-1-1-11,1315 galaxyEnaQ0Ba-1-17,1227 galaxyEnaQ0Ba-1-17,1315 galaxyEnaQ0Ba-2,1227 galaxyEnaQ0Ba-2,1315 galaxyEnaQ1Ay-4,1227 galaxyEnaQ1Ay-4,1315 galaxyEnaQ1Ay-4-2,1227 galaxyEnaQ1Ay-4-2,1315 galaxyEnaQ1Ay-4-2-2,1227 galaxyEnaQ1Ay-4-2-2,1315 galaxyEnaQ1Ay-43,1227 galaxyEnaQ1Ay-43,1315 galaxyEnaQ1Ba-1-17,1227 galaxyEnaQ1Ba-1-17,1315 galaxyEnaQ2Ay-120,1227 galaxyEnaQ2Ay-120,1315 galaxyEnaQ2Ay-122,1227 galaxyEnaQ2Ay-122,1315 galaxyEnaQ2Ay-4,1227 galaxyEnaQ2Ay-4,1315 galaxyEnaQ2Ay-5,1227 galaxyEnaQ2Ay-5,1315 galaxyEnaQ2Ay-6,1227 galaxyEnaQ2Ay-6,1315 galaxyEnaQ3Ay-4,1227 galaxyEnaQ3Ay-4,1315 galaxyEnaQ3Ay-5,1227 galaxyEnaQ3Ay-5,1315 galaxyEnaQ3Ay-9,1227 galaxyEnaQ3Ay-9,1315 galaxyEnaQ3B-1-1-7,1227 galaxyEnaQ3B-1-1-7,1315 galaxyEnaQ3B-1-617-2,1227 galaxyEnaQ3B-1-617-2,1315 bam kimIvtCov,166 bamcoverage kimIvtCov,171 band cytoBandIdeo,2 bank pdb,5 pdb,28 pdb,152 resistPred,65 rosettaMhc,72 bar nextstrainFreq,94 nextstrainParsimony,260 nextstrainSamples,393 nextstrainSamples,429 nextstrainSamples,433 sarsCov2Phylo,397 sarsCov2Phylo,465 sarsCov2Phylo,469 sarsCov2PhyloPub,426 sarsCov2PhyloPub,494 sarsCov2PhyloPub,498 barber multiz7way,909 strainCons119way,2287 strainCons44way,1882 barcelona Q0_tracks,246 Q1_tracks,248 Q2_tracks,248 Q3_tracks,248 galaxyEna,248 galaxyEnaQ0Ba-1,244 galaxyEnaQ0Ba-1-1,244 galaxyEnaQ0Ba-1-1-11,244 galaxyEnaQ0Ba-1-17,244 galaxyEnaQ0Ba-2,244 galaxyEnaQ1Ay-4,244 galaxyEnaQ1Ay-4-2,244 galaxyEnaQ1Ay-4-2-2,244 galaxyEnaQ1Ay-43,244 galaxyEnaQ1Ba-1-17,244 galaxyEnaQ2Ay-120,244 galaxyEnaQ2Ay-122,244 galaxyEnaQ2Ay-4,244 galaxyEnaQ2Ay-5,244 galaxyEnaQ2Ay-6,244 galaxyEnaQ3Ay-4,244 galaxyEnaQ3Ay-5,244 galaxyEnaQ3Ay-9,244 galaxyEnaQ3B-1-1-7,244 galaxyEnaQ3B-1-617-2,244 barchart kimRnaMod,77 kimRnaMod,108 barclay variantMuts,1285 barcoding rapid,364 barplot abEscape,409 bloomEscMabAvg,413 bloomEscMax,419 bloomEscSerumAvg,414 bloomEscTop,417 escape,416 mccoy,409 rappuoli,416 barplots abEscape,453 bloomEscMabAvg,457 bloomEscMax,463 bloomEscSerumAvg,458 bloomEscTop,461 escape,460 mccoy,453 rappuoli,460 barrett variantMuts,1287 variantMuts,1330 bars Calu3_07hpi,75 ORFs,73 Vero6_05hpi,75 Vero6_24hpi,75 kimNp,51 kimNp,80 kimTranscripts,120 nextstrainFreq,118 rnaStructRangan,66 transcriptome,112 weizmanOrfs,81 base Q0_tracks,499 Q0_tracks,517 Q1_tracks,501 Q1_tracks,519 Q2_tracks,501 Q2_tracks,519 Q3_tracks,501 Q3_tracks,519 cpgIslandExt,46 cpgIslandExt,53 cpgIslandExt,234 cpgIslandExtUnmasked,49 cpgIslandExtUnmasked,56 cpgIslandExtUnmasked,237 cpgIslandSuper,46 cpgIslandSuper,53 cpgIslandSuper,234 galaxyEna,501 galaxyEna,519 galaxyEnaQ0Ba-1,497 galaxyEnaQ0Ba-1,515 galaxyEnaQ0Ba-1-1,497 galaxyEnaQ0Ba-1-1,515 galaxyEnaQ0Ba-1-1-11,497 galaxyEnaQ0Ba-1-1-11,515 galaxyEnaQ0Ba-1-17,497 galaxyEnaQ0Ba-1-17,515 galaxyEnaQ0Ba-2,497 galaxyEnaQ0Ba-2,515 galaxyEnaQ1Ay-4,497 galaxyEnaQ1Ay-4,515 galaxyEnaQ1Ay-4-2,497 galaxyEnaQ1Ay-4-2,515 galaxyEnaQ1Ay-4-2-2,497 galaxyEnaQ1Ay-4-2-2,515 galaxyEnaQ1Ay-43,497 galaxyEnaQ1Ay-43,515 galaxyEnaQ1Ba-1-17,497 galaxyEnaQ1Ba-1-17,515 galaxyEnaQ2Ay-120,497 galaxyEnaQ2Ay-120,515 galaxyEnaQ2Ay-122,497 galaxyEnaQ2Ay-122,515 galaxyEnaQ2Ay-4,497 galaxyEnaQ2Ay-4,515 galaxyEnaQ2Ay-5,497 galaxyEnaQ2Ay-5,515 galaxyEnaQ2Ay-6,497 galaxyEnaQ2Ay-6,515 galaxyEnaQ3Ay-4,497 galaxyEnaQ3Ay-4,515 galaxyEnaQ3Ay-5,497 galaxyEnaQ3Ay-5,515 galaxyEnaQ3Ay-9,497 galaxyEnaQ3Ay-9,515 galaxyEnaQ3B-1-1-7,497 galaxyEnaQ3B-1-1-7,515 galaxyEnaQ3B-1-617-2,497 galaxyEnaQ3B-1-617-2,515 multiz7way,316 multiz7way,323 pyle,160 rapid,47 rnaStructRangan,70 strainCons119way,666 strainCons119way,678 strainCons119way,2014 strainCons44way,614 strainCons44way,626 strainCons44way,1609 treangen,220 treangen,239 treangen,258 treangen,266 base-level multiz7way,329 multiz7way,417 strainCons119way,672 strainCons119way,757 strainCons44way,620 strainCons44way,705 base-paired pyle,96 basecalls problematicSites,189 based Calu3_07hpi,25 Calu3_07hpi,236 IgG_Z-score-_COVID-19_patients,136 IgM_Z-score-_COVID-19_patients,136 ORFs,23 ORFs,234 PhyloCSF_smooth,557 PhyloCSFpower,572 Vero6_05hpi,25 Vero6_05hpi,236 Vero6_24hpi,25 Vero6_24hpi,236 augustusGene,28 bpmIggCovidSum,145 bpmIgmCovidSum,145 genscan,26 kimTranscripts,30 pbm,145 pbmShanghai,222 pond,188 rfam,98 sarsCov2PhyloPub,960 spikeMuts,102 spikeMuts,385 strainCons119way,190 strainCons119way,1792 strainCons44way,138 strainCons44way,1387 transcriptome,22 unipCov2Chain,49 unipCov2DisulfBond,45 unipCov2Domain,44 unipCov2LocCytopl,44 unipCov2LocExtra,44 unipCov2LocSignal,45 unipCov2LocTransMemb,45 unipCov2Modif,48 unipCov2Mut,45 unipCov2Other,45 unipCov2Repeat,43 unipCov2Struct,47 variantMuts,227 weizmanOrfs,5 weizmanOrfs,31 weizmanOrfs,242 basepair kimRnaMod,67 bases cpgIslandExt,7 cpgIslandExt,353 cpgIslandExtUnmasked,10 cpgIslandExtUnmasked,356 cpgIslandSuper,7 cpgIslandSuper,353 gc5BaseBw,25 kimIvtCov,152 multiz7way,240 multiz7way,462 sarsCov2Phylo,763 strainCons119way,589 strainCons119way,660 strainCons119way,812 strainCons44way,537 strainCons44way,608 strainCons44way,760 vaccines,168 vaccines,172 basewise strainCons119wayViewphyloP,1 strainCons44wayViewphyloP,1 strainPhastCons119way,5 strainPhastCons44way,7 strainPhyloP119way,5 strainPhyloP44way,7 basic nextstrainSamples,838 basis Q0_tracks,252 Q0_tracks,997 Q1_tracks,254 Q1_tracks,999 Q2_tracks,254 Q2_tracks,999 Q3_tracks,254 Q3_tracks,999 cpgIslandExt,289 cpgIslandExtUnmasked,292 cpgIslandSuper,289 galaxyEna,254 galaxyEna,999 galaxyEnaQ0Ba-1,250 galaxyEnaQ0Ba-1,995 galaxyEnaQ0Ba-1-1,250 galaxyEnaQ0Ba-1-1,995 galaxyEnaQ0Ba-1-1-11,250 galaxyEnaQ0Ba-1-1-11,995 galaxyEnaQ0Ba-1-17,250 galaxyEnaQ0Ba-1-17,995 galaxyEnaQ0Ba-2,250 galaxyEnaQ0Ba-2,995 galaxyEnaQ1Ay-4,250 galaxyEnaQ1Ay-4,995 galaxyEnaQ1Ay-4-2,250 galaxyEnaQ1Ay-4-2,995 galaxyEnaQ1Ay-4-2-2,250 galaxyEnaQ1Ay-4-2-2,995 galaxyEnaQ1Ay-43,250 galaxyEnaQ1Ay-43,995 galaxyEnaQ1Ba-1-17,250 galaxyEnaQ1Ba-1-17,995 galaxyEnaQ2Ay-120,250 galaxyEnaQ2Ay-120,995 galaxyEnaQ2Ay-122,250 galaxyEnaQ2Ay-122,995 galaxyEnaQ2Ay-4,250 galaxyEnaQ2Ay-4,995 galaxyEnaQ2Ay-5,250 galaxyEnaQ2Ay-5,995 galaxyEnaQ2Ay-6,250 galaxyEnaQ2Ay-6,995 galaxyEnaQ3Ay-4,250 galaxyEnaQ3Ay-4,995 galaxyEnaQ3Ay-5,250 galaxyEnaQ3Ay-5,995 galaxyEnaQ3Ay-9,250 galaxyEnaQ3Ay-9,995 galaxyEnaQ3B-1-1-7,250 galaxyEnaQ3B-1-1-7,995 galaxyEnaQ3B-1-617-2,250 galaxyEnaQ3B-1-617-2,995 rosettaMhc,146 bat strainCons119way,90 strainCons119way,1387 strainCons119way,1391 strainCons119way,1435 strainCons119way,1439 strainCons44way,2 strainCons44wayViewphastcons,1 strainName44way,1 strainPhastCons44way,1 strainPhastCons44way,4 strainPhyloP44way,1 strainPhyloP44way,4 bat-associated primers,218 bat-sl-covzc45 strainCons44way,1150 bat-sl-covzxc21 strainCons44way,1154 batch Q0_tracks,160 Q0_tracks,883 Q0_tracks,914 Q0_tracks,942 Q0_tracks,1013 Q1_tracks,162 Q1_tracks,885 Q1_tracks,916 Q1_tracks,944 Q1_tracks,1015 Q2_tracks,162 Q2_tracks,885 Q2_tracks,916 Q2_tracks,944 Q2_tracks,1015 Q3_tracks,162 Q3_tracks,885 Q3_tracks,916 Q3_tracks,944 Q3_tracks,1015 galaxyEna,162 galaxyEna,885 galaxyEna,916 galaxyEna,944 galaxyEna,1015 galaxyEnaQ0Ba-1,158 galaxyEnaQ0Ba-1,881 galaxyEnaQ0Ba-1,912 galaxyEnaQ0Ba-1,940 galaxyEnaQ0Ba-1,1011 galaxyEnaQ0Ba-1-1,158 galaxyEnaQ0Ba-1-1,881 galaxyEnaQ0Ba-1-1,912 galaxyEnaQ0Ba-1-1,940 galaxyEnaQ0Ba-1-1,1011 galaxyEnaQ0Ba-1-1-11,158 galaxyEnaQ0Ba-1-1-11,881 galaxyEnaQ0Ba-1-1-11,912 galaxyEnaQ0Ba-1-1-11,940 galaxyEnaQ0Ba-1-1-11,1011 galaxyEnaQ0Ba-1-17,158 galaxyEnaQ0Ba-1-17,881 galaxyEnaQ0Ba-1-17,912 galaxyEnaQ0Ba-1-17,940 galaxyEnaQ0Ba-1-17,1011 galaxyEnaQ0Ba-2,158 galaxyEnaQ0Ba-2,881 galaxyEnaQ0Ba-2,912 galaxyEnaQ0Ba-2,940 galaxyEnaQ0Ba-2,1011 galaxyEnaQ1Ay-4,158 galaxyEnaQ1Ay-4,881 galaxyEnaQ1Ay-4,912 galaxyEnaQ1Ay-4,940 galaxyEnaQ1Ay-4,1011 galaxyEnaQ1Ay-4-2,158 galaxyEnaQ1Ay-4-2,881 galaxyEnaQ1Ay-4-2,912 galaxyEnaQ1Ay-4-2,940 galaxyEnaQ1Ay-4-2,1011 galaxyEnaQ1Ay-4-2-2,158 galaxyEnaQ1Ay-4-2-2,881 galaxyEnaQ1Ay-4-2-2,912 galaxyEnaQ1Ay-4-2-2,940 galaxyEnaQ1Ay-4-2-2,1011 galaxyEnaQ1Ay-43,158 galaxyEnaQ1Ay-43,881 galaxyEnaQ1Ay-43,912 galaxyEnaQ1Ay-43,940 galaxyEnaQ1Ay-43,1011 galaxyEnaQ1Ba-1-17,158 galaxyEnaQ1Ba-1-17,881 galaxyEnaQ1Ba-1-17,912 galaxyEnaQ1Ba-1-17,940 galaxyEnaQ1Ba-1-17,1011 galaxyEnaQ2Ay-120,158 galaxyEnaQ2Ay-120,881 galaxyEnaQ2Ay-120,912 galaxyEnaQ2Ay-120,940 galaxyEnaQ2Ay-120,1011 galaxyEnaQ2Ay-122,158 galaxyEnaQ2Ay-122,881 galaxyEnaQ2Ay-122,912 galaxyEnaQ2Ay-122,940 galaxyEnaQ2Ay-122,1011 galaxyEnaQ2Ay-4,158 galaxyEnaQ2Ay-4,881 galaxyEnaQ2Ay-4,912 galaxyEnaQ2Ay-4,940 galaxyEnaQ2Ay-4,1011 galaxyEnaQ2Ay-5,158 galaxyEnaQ2Ay-5,881 galaxyEnaQ2Ay-5,912 galaxyEnaQ2Ay-5,940 galaxyEnaQ2Ay-5,1011 galaxyEnaQ2Ay-6,158 galaxyEnaQ2Ay-6,881 galaxyEnaQ2Ay-6,912 galaxyEnaQ2Ay-6,940 galaxyEnaQ2Ay-6,1011 galaxyEnaQ3Ay-4,158 galaxyEnaQ3Ay-4,881 galaxyEnaQ3Ay-4,912 galaxyEnaQ3Ay-4,940 galaxyEnaQ3Ay-4,1011 galaxyEnaQ3Ay-5,158 galaxyEnaQ3Ay-5,881 galaxyEnaQ3Ay-5,912 galaxyEnaQ3Ay-5,940 galaxyEnaQ3Ay-5,1011 galaxyEnaQ3Ay-9,158 galaxyEnaQ3Ay-9,881 galaxyEnaQ3Ay-9,912 galaxyEnaQ3Ay-9,940 galaxyEnaQ3Ay-9,1011 galaxyEnaQ3B-1-1-7,158 galaxyEnaQ3B-1-1-7,881 galaxyEnaQ3B-1-1-7,912 galaxyEnaQ3B-1-1-7,940 galaxyEnaQ3B-1-1-7,1011 galaxyEnaQ3B-1-617-2,158 galaxyEnaQ3B-1-617-2,881 galaxyEnaQ3B-1-617-2,912 galaxyEnaQ3B-1-617-2,940 galaxyEnaQ3B-1-617-2,1011 batch-level Q0_tracks,178 Q0_tracks,213 Q1_tracks,180 Q1_tracks,215 Q2_tracks,180 Q2_tracks,215 Q3_tracks,180 Q3_tracks,215 galaxyEna,180 galaxyEna,215 galaxyEnaQ0Ba-1,176 galaxyEnaQ0Ba-1,211 galaxyEnaQ0Ba-1-1,176 galaxyEnaQ0Ba-1-1,211 galaxyEnaQ0Ba-1-1-11,176 galaxyEnaQ0Ba-1-1-11,211 galaxyEnaQ0Ba-1-17,176 galaxyEnaQ0Ba-1-17,211 galaxyEnaQ0Ba-2,176 galaxyEnaQ0Ba-2,211 galaxyEnaQ1Ay-4,176 galaxyEnaQ1Ay-4,211 galaxyEnaQ1Ay-4-2,176 galaxyEnaQ1Ay-4-2,211 galaxyEnaQ1Ay-4-2-2,176 galaxyEnaQ1Ay-4-2-2,211 galaxyEnaQ1Ay-43,176 galaxyEnaQ1Ay-43,211 galaxyEnaQ1Ba-1-17,176 galaxyEnaQ1Ba-1-17,211 galaxyEnaQ2Ay-120,176 galaxyEnaQ2Ay-120,211 galaxyEnaQ2Ay-122,176 galaxyEnaQ2Ay-122,211 galaxyEnaQ2Ay-4,176 galaxyEnaQ2Ay-4,211 galaxyEnaQ2Ay-5,176 galaxyEnaQ2Ay-5,211 galaxyEnaQ2Ay-6,176 galaxyEnaQ2Ay-6,211 galaxyEnaQ3Ay-4,176 galaxyEnaQ3Ay-4,211 galaxyEnaQ3Ay-5,176 galaxyEnaQ3Ay-5,211 galaxyEnaQ3Ay-9,176 galaxyEnaQ3Ay-9,211 galaxyEnaQ3B-1-1-7,176 galaxyEnaQ3B-1-1-7,211 galaxyEnaQ3B-1-617-2,176 galaxyEnaQ3B-1-617-2,211 batches Q0_tracks,172 Q0_tracks,805 Q1_tracks,174 Q1_tracks,807 Q2_tracks,174 Q2_tracks,807 Q3_tracks,174 Q3_tracks,807 galaxyEna,174 galaxyEna,807 galaxyEnaQ0Ba-1,170 galaxyEnaQ0Ba-1,803 galaxyEnaQ0Ba-1-1,170 galaxyEnaQ0Ba-1-1,803 galaxyEnaQ0Ba-1-1-11,170 galaxyEnaQ0Ba-1-1-11,803 galaxyEnaQ0Ba-1-17,170 galaxyEnaQ0Ba-1-17,803 galaxyEnaQ0Ba-2,170 galaxyEnaQ0Ba-2,803 galaxyEnaQ1Ay-4,170 galaxyEnaQ1Ay-4,803 galaxyEnaQ1Ay-4-2,170 galaxyEnaQ1Ay-4-2,803 galaxyEnaQ1Ay-4-2-2,170 galaxyEnaQ1Ay-4-2-2,803 galaxyEnaQ1Ay-43,170 galaxyEnaQ1Ay-43,803 galaxyEnaQ1Ba-1-17,170 galaxyEnaQ1Ba-1-17,803 galaxyEnaQ2Ay-120,170 galaxyEnaQ2Ay-120,803 galaxyEnaQ2Ay-122,170 galaxyEnaQ2Ay-122,803 galaxyEnaQ2Ay-4,170 galaxyEnaQ2Ay-4,803 galaxyEnaQ2Ay-5,170 galaxyEnaQ2Ay-5,803 galaxyEnaQ2Ay-6,170 galaxyEnaQ2Ay-6,803 galaxyEnaQ3Ay-4,170 galaxyEnaQ3Ay-4,803 galaxyEnaQ3Ay-5,170 galaxyEnaQ3Ay-5,803 galaxyEnaQ3Ay-9,170 galaxyEnaQ3Ay-9,803 galaxyEnaQ3B-1-1-7,170 galaxyEnaQ3B-1-1-7,803 galaxyEnaQ3B-1-617-2,170 galaxyEnaQ3B-1-617-2,803 bats strainCons44way,10 strainCons44wayViewalign,9 strainCons44wayViewphastcons,11 strainCons44wayViewphyloP,10 strainName44way,10 bb problematicSites,508 bbi artic,157 articV4,157 articV4_1,170 cas13Crispr,442 contacts,370 icshape,159 kimRnaMod,204 kimTranscripts,421 phyloGenes,418 poranHla1,231 poranHla2,231 rapid,311 swift,240 transcriptome,427 vaccines,400 varskip,163 bbsrc rfam,161 be Calu3_07hpi,311 IgG_Z-score-_COVID-19_patients,287 IgG_Z-score-_COVID-19_patients,318 IgG_Z-score-_COVID-19_patients,326 IgG_Z-score-_COVID-19_patients,344 IgG_Z-score-_COVID-19_patients,354 IgM_Z-score-_COVID-19_patients,287 IgM_Z-score-_COVID-19_patients,318 IgM_Z-score-_COVID-19_patients,326 IgM_Z-score-_COVID-19_patients,344 IgM_Z-score-_COVID-19_patients,354 ORFs,309 PhyloCSF_smooth,119 PhyloCSF_smooth,158 PhyloCSF_smooth,274 PhyloCSF_smooth,303 PhyloCSF_smooth,357 PhyloCSF_smooth,630 PhyloCSF_smooth,679 PhyloCSFpower,134 PhyloCSFpower,173 PhyloCSFpower,289 PhyloCSFpower,318 PhyloCSFpower,372 PhyloCSFpower,641 Q0_tracks,143 Q0_tracks,168 Q0_tracks,385 Q0_tracks,452 Q0_tracks,537 Q0_tracks,644 Q0_tracks,678 Q0_tracks,966 Q0_tracks,1178 Q1_tracks,145 Q1_tracks,170 Q1_tracks,387 Q1_tracks,454 Q1_tracks,539 Q1_tracks,646 Q1_tracks,680 Q1_tracks,968 Q1_tracks,1180 Q2_tracks,145 Q2_tracks,170 Q2_tracks,387 Q2_tracks,454 Q2_tracks,539 Q2_tracks,646 Q2_tracks,680 Q2_tracks,968 Q2_tracks,1180 Q3_tracks,145 Q3_tracks,170 Q3_tracks,387 Q3_tracks,454 Q3_tracks,539 Q3_tracks,646 Q3_tracks,680 Q3_tracks,968 Q3_tracks,1180 Starr_Bloom,203 Starr_Bloom_bind,197 Vero6_05hpi,311 Vero6_24hpi,311 abEscape,655 addgene,23 addgene,118 addgene,252 artic,70 artic,101 artic,109 artic,127 artic,137 articV4,70 articV4,101 articV4,109 articV4,127 articV4,137 articV4_1,81 articV4_1,114 articV4_1,122 articV4_1,140 articV4_1,150 augustusGene,99 bloomEscMabAvg,659 bloomEscMax,665 bloomEscSerumAvg,660 bloomEscTop,663 bpmIggCovidSum,296 bpmIggCovidSum,327 bpmIggCovidSum,335 bpmIggCovidSum,353 bpmIggCovidSum,363 bpmIgmCovidSum,296 bpmIgmCovidSum,327 bpmIgmCovidSum,335 bpmIgmCovidSum,353 bpmIgmCovidSum,363 cas13Crispr,355 cas13Crispr,386 cas13Crispr,394 cas13Crispr,412 cas13Crispr,422 contacts,183 contacts,259 contacts,283 contacts,314 contacts,322 contacts,340 contacts,350 cpgIslandExt,37 cpgIslandExt,70 cpgIslandExt,187 cpgIslandExt,513 cpgIslandExt,532 cpgIslandExt,561 cpgIslandExt,572 cpgIslandExtUnmasked,40 cpgIslandExtUnmasked,73 cpgIslandExtUnmasked,190 cpgIslandExtUnmasked,516 cpgIslandExtUnmasked,535 cpgIslandExtUnmasked,564 cpgIslandExtUnmasked,575 cpgIslandSuper,37 cpgIslandSuper,70 cpgIslandSuper,187 cpgIslandSuper,513 cpgIslandSuper,532 cpgIslandSuper,561 cpgIslandSuper,572 escape,662 galaxyEna,145 galaxyEna,170 galaxyEna,387 galaxyEna,454 galaxyEna,539 galaxyEna,646 galaxyEna,680 galaxyEna,968 galaxyEna,1180 galaxyEnaQ0Ba-1,141 galaxyEnaQ0Ba-1,166 galaxyEnaQ0Ba-1,383 galaxyEnaQ0Ba-1,450 galaxyEnaQ0Ba-1,535 galaxyEnaQ0Ba-1,642 galaxyEnaQ0Ba-1,676 galaxyEnaQ0Ba-1,964 galaxyEnaQ0Ba-1,1176 galaxyEnaQ0Ba-1-1,141 galaxyEnaQ0Ba-1-1,166 galaxyEnaQ0Ba-1-1,383 galaxyEnaQ0Ba-1-1,450 galaxyEnaQ0Ba-1-1,535 galaxyEnaQ0Ba-1-1,642 galaxyEnaQ0Ba-1-1,676 galaxyEnaQ0Ba-1-1,964 galaxyEnaQ0Ba-1-1,1176 galaxyEnaQ0Ba-1-1-11,141 galaxyEnaQ0Ba-1-1-11,166 galaxyEnaQ0Ba-1-1-11,383 galaxyEnaQ0Ba-1-1-11,450 galaxyEnaQ0Ba-1-1-11,535 galaxyEnaQ0Ba-1-1-11,642 galaxyEnaQ0Ba-1-1-11,676 galaxyEnaQ0Ba-1-1-11,964 galaxyEnaQ0Ba-1-1-11,1176 galaxyEnaQ0Ba-1-17,141 galaxyEnaQ0Ba-1-17,166 galaxyEnaQ0Ba-1-17,383 galaxyEnaQ0Ba-1-17,450 galaxyEnaQ0Ba-1-17,535 galaxyEnaQ0Ba-1-17,642 galaxyEnaQ0Ba-1-17,676 galaxyEnaQ0Ba-1-17,964 galaxyEnaQ0Ba-1-17,1176 galaxyEnaQ0Ba-2,141 galaxyEnaQ0Ba-2,166 galaxyEnaQ0Ba-2,383 galaxyEnaQ0Ba-2,450 galaxyEnaQ0Ba-2,535 galaxyEnaQ0Ba-2,642 galaxyEnaQ0Ba-2,676 galaxyEnaQ0Ba-2,964 galaxyEnaQ0Ba-2,1176 galaxyEnaQ1Ay-4,141 galaxyEnaQ1Ay-4,166 galaxyEnaQ1Ay-4,383 galaxyEnaQ1Ay-4,450 galaxyEnaQ1Ay-4,535 galaxyEnaQ1Ay-4,642 galaxyEnaQ1Ay-4,676 galaxyEnaQ1Ay-4,964 galaxyEnaQ1Ay-4,1176 galaxyEnaQ1Ay-4-2,141 galaxyEnaQ1Ay-4-2,166 galaxyEnaQ1Ay-4-2,383 galaxyEnaQ1Ay-4-2,450 galaxyEnaQ1Ay-4-2,535 galaxyEnaQ1Ay-4-2,642 galaxyEnaQ1Ay-4-2,676 galaxyEnaQ1Ay-4-2,964 galaxyEnaQ1Ay-4-2,1176 galaxyEnaQ1Ay-4-2-2,141 galaxyEnaQ1Ay-4-2-2,166 galaxyEnaQ1Ay-4-2-2,383 galaxyEnaQ1Ay-4-2-2,450 galaxyEnaQ1Ay-4-2-2,535 galaxyEnaQ1Ay-4-2-2,642 galaxyEnaQ1Ay-4-2-2,676 galaxyEnaQ1Ay-4-2-2,964 galaxyEnaQ1Ay-4-2-2,1176 galaxyEnaQ1Ay-43,141 galaxyEnaQ1Ay-43,166 galaxyEnaQ1Ay-43,383 galaxyEnaQ1Ay-43,450 galaxyEnaQ1Ay-43,535 galaxyEnaQ1Ay-43,642 galaxyEnaQ1Ay-43,676 galaxyEnaQ1Ay-43,964 galaxyEnaQ1Ay-43,1176 galaxyEnaQ1Ba-1-17,141 galaxyEnaQ1Ba-1-17,166 galaxyEnaQ1Ba-1-17,383 galaxyEnaQ1Ba-1-17,450 galaxyEnaQ1Ba-1-17,535 galaxyEnaQ1Ba-1-17,642 galaxyEnaQ1Ba-1-17,676 galaxyEnaQ1Ba-1-17,964 galaxyEnaQ1Ba-1-17,1176 galaxyEnaQ2Ay-120,141 galaxyEnaQ2Ay-120,166 galaxyEnaQ2Ay-120,383 galaxyEnaQ2Ay-120,450 galaxyEnaQ2Ay-120,535 galaxyEnaQ2Ay-120,642 galaxyEnaQ2Ay-120,676 galaxyEnaQ2Ay-120,964 galaxyEnaQ2Ay-120,1176 galaxyEnaQ2Ay-122,141 galaxyEnaQ2Ay-122,166 galaxyEnaQ2Ay-122,383 galaxyEnaQ2Ay-122,450 galaxyEnaQ2Ay-122,535 galaxyEnaQ2Ay-122,642 galaxyEnaQ2Ay-122,676 galaxyEnaQ2Ay-122,964 galaxyEnaQ2Ay-122,1176 galaxyEnaQ2Ay-4,141 galaxyEnaQ2Ay-4,166 galaxyEnaQ2Ay-4,383 galaxyEnaQ2Ay-4,450 galaxyEnaQ2Ay-4,535 galaxyEnaQ2Ay-4,642 galaxyEnaQ2Ay-4,676 galaxyEnaQ2Ay-4,964 galaxyEnaQ2Ay-4,1176 galaxyEnaQ2Ay-5,141 galaxyEnaQ2Ay-5,166 galaxyEnaQ2Ay-5,383 galaxyEnaQ2Ay-5,450 galaxyEnaQ2Ay-5,535 galaxyEnaQ2Ay-5,642 galaxyEnaQ2Ay-5,676 galaxyEnaQ2Ay-5,964 galaxyEnaQ2Ay-5,1176 galaxyEnaQ2Ay-6,141 galaxyEnaQ2Ay-6,166 galaxyEnaQ2Ay-6,383 galaxyEnaQ2Ay-6,450 galaxyEnaQ2Ay-6,535 galaxyEnaQ2Ay-6,642 galaxyEnaQ2Ay-6,676 galaxyEnaQ2Ay-6,964 galaxyEnaQ2Ay-6,1176 galaxyEnaQ3Ay-4,141 galaxyEnaQ3Ay-4,166 galaxyEnaQ3Ay-4,383 galaxyEnaQ3Ay-4,450 galaxyEnaQ3Ay-4,535 galaxyEnaQ3Ay-4,642 galaxyEnaQ3Ay-4,676 galaxyEnaQ3Ay-4,964 galaxyEnaQ3Ay-4,1176 galaxyEnaQ3Ay-5,141 galaxyEnaQ3Ay-5,166 galaxyEnaQ3Ay-5,383 galaxyEnaQ3Ay-5,450 galaxyEnaQ3Ay-5,535 galaxyEnaQ3Ay-5,642 galaxyEnaQ3Ay-5,676 galaxyEnaQ3Ay-5,964 galaxyEnaQ3Ay-5,1176 galaxyEnaQ3Ay-9,141 galaxyEnaQ3Ay-9,166 galaxyEnaQ3Ay-9,383 galaxyEnaQ3Ay-9,450 galaxyEnaQ3Ay-9,535 galaxyEnaQ3Ay-9,642 galaxyEnaQ3Ay-9,676 galaxyEnaQ3Ay-9,964 galaxyEnaQ3Ay-9,1176 galaxyEnaQ3B-1-1-7,141 galaxyEnaQ3B-1-1-7,166 galaxyEnaQ3B-1-1-7,383 galaxyEnaQ3B-1-1-7,450 galaxyEnaQ3B-1-1-7,535 galaxyEnaQ3B-1-1-7,642 galaxyEnaQ3B-1-1-7,676 galaxyEnaQ3B-1-1-7,964 galaxyEnaQ3B-1-1-7,1176 galaxyEnaQ3B-1-617-2,141 galaxyEnaQ3B-1-617-2,166 galaxyEnaQ3B-1-617-2,383 galaxyEnaQ3B-1-617-2,450 galaxyEnaQ3B-1-617-2,535 galaxyEnaQ3B-1-617-2,642 galaxyEnaQ3B-1-617-2,676 galaxyEnaQ3B-1-617-2,964 galaxyEnaQ3B-1-617-2,1176 gc5BaseBw,41 icshape,100 icshape,114 icshape,138 kimNp,68 kimRnaMod,117 kimRnaMod,148 kimRnaMod,156 kimRnaMod,174 kimRnaMod,184 kimTranscripts,108 kimTranscripts,334 kimTranscripts,365 kimTranscripts,373 kimTranscripts,391 kimTranscripts,401 mccoy,655 microdel,67 microdel,143 microdel,207 multiz7way,413 ncbiGeneBGP,45 ncbiGeneBGP,70 ncbiGeneBGP,78 ncbiGeneBGP,89 ncbiGeneBGP,112 ncbiGeneBGP,122 ncbiProducts,61 ncbiProducts,86 ncbiProducts,94 ncbiProducts,105 ncbiProducts,128 ncbiProducts,138 nextstrainClade,196 nextstrainClade,211 nextstrainFreq,189 nextstrainFreq,203 nextstrainFreq,227 nextstrainFreq,330 nextstrainGene,146 nextstrainGene,160 nextstrainParsimony,100 nextstrainParsimony,169 nextstrainParsimony,232 nextstrainParsimony,358 nextstrainParsimony,372 nextstrainSamples,77 nextstrainSamples,225 nextstrainSamples,544 nextstrainSamples,575 nextstrainSamples,697 nextstrainSamples,817 pbm,296 pbm,327 pbm,335 pbm,353 pbm,363 pbmShanghai,413 pbmShanghai,444 pbmShanghai,452 pbmShanghai,470 phyloGenes,181 phyloGenes,331 phyloGenes,362 phyloGenes,370 phyloGenes,388 phyloGenes,398 phyloGenes,470 pond,50 pond,137 pond,169 pond,183 poranHla1,144 poranHla1,175 poranHla1,183 poranHla1,201 poranHla1,211 poranHla2,144 poranHla2,175 poranHla2,183 poranHla2,201 poranHla2,211 potPathoIndel,70 potPathoIndel,89 primers,197 primers,273 primers,333 primers,348 problematicSites,34 problematicSites,157 problematicSites,383 problematicSites,516 problematicSites,530 publicAnnots,75 pyle,270 rapid,65 rapid,112 rapid,182 rapid,224 rapid,255 rapid,263 rapid,281 rapid,291 rappuoli,662 recomb,74 recomb,131 recomb,290 recomb,305 resist,89 resist,114 resistPred,177 resistPred,206 rosettaMhc,142 sarsCov2Phylo,61 sarsCov2Phylo,536 sarsCov2Phylo,544 sarsCov2Phylo,721 sarsCov2Phylo,850 sarsCov2PhyloPub,75 sarsCov2PhyloPub,561 sarsCov2PhyloPub,569 sarsCov2PhyloPub,871 simpleRepeat,44 spikeMuts,81 spikeMuts,232 spikeMuts,299 spikeMuts,316 spikeMuts,331 strainCons119way,331 strainCons119way,345 strainCons119way,1907 strainCons119way,1914 strainCons119way,1961 strainCons119way,2169 strainCons44way,279 strainCons44way,293 strainCons44way,1502 strainCons44way,1509 strainCons44way,1556 strainCons44way,1764 swift,119 swift,153 swift,184 swift,192 swift,210 swift,220 transcriptome,100 transcriptome,191 transcriptome,239 transcriptome,322 transcriptome,340 transcriptome,371 transcriptome,379 transcriptome,397 transcriptome,407 unipCov2AliSwissprot,256 unipCov2AliSwissprot,266 unipCov2AliSwissprot,291 unipCov2AliSwissprot,301 unipCov2AliSwissprot,310 unipCov2AliSwissprot,321 unipCov2AliSwissprot,344 unipCov2AliSwissprot,351 unipCov2Chain,131 unipCov2Chain,486 unipCov2Chain,496 unipCov2Chain,521 unipCov2Chain,531 unipCov2Chain,540 unipCov2Chain,551 unipCov2Chain,574 unipCov2Chain,581 unipCov2DisulfBond,127 unipCov2DisulfBond,482 unipCov2DisulfBond,492 unipCov2DisulfBond,517 unipCov2DisulfBond,527 unipCov2DisulfBond,536 unipCov2DisulfBond,547 unipCov2DisulfBond,570 unipCov2DisulfBond,577 unipCov2Domain,126 unipCov2Domain,481 unipCov2Domain,491 unipCov2Domain,516 unipCov2Domain,526 unipCov2Domain,535 unipCov2Domain,546 unipCov2Domain,569 unipCov2Domain,576 unipCov2Interest,162 unipCov2Interest,172 unipCov2Interest,197 unipCov2Interest,207 unipCov2Interest,216 unipCov2Interest,227 unipCov2Interest,250 unipCov2Interest,257 unipCov2LocCytopl,126 unipCov2LocCytopl,481 unipCov2LocCytopl,491 unipCov2LocCytopl,516 unipCov2LocCytopl,526 unipCov2LocCytopl,535 unipCov2LocCytopl,546 unipCov2LocCytopl,569 unipCov2LocCytopl,576 unipCov2LocExtra,126 unipCov2LocExtra,481 unipCov2LocExtra,491 unipCov2LocExtra,516 unipCov2LocExtra,526 unipCov2LocExtra,535 unipCov2LocExtra,546 unipCov2LocExtra,569 unipCov2LocExtra,576 unipCov2LocSignal,127 unipCov2LocSignal,482 unipCov2LocSignal,492 unipCov2LocSignal,517 unipCov2LocSignal,527 unipCov2LocSignal,536 unipCov2LocSignal,547 unipCov2LocSignal,570 unipCov2LocSignal,577 unipCov2LocTransMemb,127 unipCov2LocTransMemb,482 unipCov2LocTransMemb,492 unipCov2LocTransMemb,517 unipCov2LocTransMemb,527 unipCov2LocTransMemb,536 unipCov2LocTransMemb,547 unipCov2LocTransMemb,570 unipCov2LocTransMemb,577 unipCov2Modif,130 unipCov2Modif,485 unipCov2Modif,495 unipCov2Modif,520 unipCov2Modif,530 unipCov2Modif,539 unipCov2Modif,550 unipCov2Modif,573 unipCov2Modif,580 unipCov2Mut,127 unipCov2Mut,482 unipCov2Mut,492 unipCov2Mut,517 unipCov2Mut,527 unipCov2Mut,536 unipCov2Mut,547 unipCov2Mut,570 unipCov2Mut,577 unipCov2Other,127 unipCov2Other,482 unipCov2Other,492 unipCov2Other,517 unipCov2Other,527 unipCov2Other,536 unipCov2Other,547 unipCov2Other,570 unipCov2Other,577 unipCov2Repeat,125 unipCov2Repeat,480 unipCov2Repeat,490 unipCov2Repeat,515 unipCov2Repeat,525 unipCov2Repeat,534 unipCov2Repeat,545 unipCov2Repeat,568 unipCov2Repeat,575 unipCov2Struct,129 unipCov2Struct,484 unipCov2Struct,494 unipCov2Struct,519 unipCov2Struct,529 unipCov2Struct,538 unipCov2Struct,549 unipCov2Struct,572 unipCov2Struct,579 vaccines,365 vaccines,393 vaccines,411 vaccines,434 variantMuts,992 variantMuts,1006 varskip,76 varskip,107 varskip,115 varskip,133 varskip,143 weizmanOrfs,317 bebipred epitopes,34 because IgG_Z-score-_COVID-19_patients,92 IgM_Z-score-_COVID-19_patients,92 PhyloCSF_smooth,76 PhyloCSF_smooth,245 PhyloCSFpower,91 PhyloCSFpower,260 bpmIggCovidSum,101 bpmIgmCovidSum,101 cpgIslandExt,61 cpgIslandExt,107 cpgIslandExtUnmasked,64 cpgIslandExtUnmasked,110 cpgIslandSuper,61 cpgIslandSuper,107 pbm,101 pbmShanghai,158 recomb,101 become nextstrainClade,68 rosettaMhc,129 bed addgene,218 artic,58 gordon2,107 bed12 vaccines,341 bed3 windowmaskerSdust,76 bedford nextstrainClade,256 nextstrainFreq,391 nextstrainGene,205 nextstrainParsimony,458 nextstrainSamples,1011 bedgraph Starr_Bloom,181 Starr_Bloom_bind,175 abEscape,581 abEscape,596 abEscape,612 abEscape,635 bloomEscMabAvg,585 bloomEscMabAvg,600 bloomEscMabAvg,616 bloomEscMabAvg,639 bloomEscMax,591 bloomEscMax,606 bloomEscMax,622 bloomEscMax,645 bloomEscSerumAvg,586 bloomEscSerumAvg,601 bloomEscSerumAvg,617 bloomEscSerumAvg,640 bloomEscTop,589 bloomEscTop,604 bloomEscTop,620 bloomEscTop,643 escape,588 escape,603 escape,619 escape,642 mccoy,581 mccoy,596 mccoy,612 mccoy,635 rappuoli,588 rappuoli,603 rappuoli,619 rappuoli,642 bedtobigbed addgene,229 treangen,159 vaccines,339 beek Q0_tracks,1233 Q0_tracks,1303 Q1_tracks,1235 Q1_tracks,1305 Q2_tracks,1235 Q2_tracks,1305 Q3_tracks,1235 Q3_tracks,1305 galaxyEna,1235 galaxyEna,1305 galaxyEnaQ0Ba-1,1231 galaxyEnaQ0Ba-1,1301 galaxyEnaQ0Ba-1-1,1231 galaxyEnaQ0Ba-1-1,1301 galaxyEnaQ0Ba-1-1-11,1231 galaxyEnaQ0Ba-1-1-11,1301 galaxyEnaQ0Ba-1-17,1231 galaxyEnaQ0Ba-1-17,1301 galaxyEnaQ0Ba-2,1231 galaxyEnaQ0Ba-2,1301 galaxyEnaQ1Ay-4,1231 galaxyEnaQ1Ay-4,1301 galaxyEnaQ1Ay-4-2,1231 galaxyEnaQ1Ay-4-2,1301 galaxyEnaQ1Ay-4-2-2,1231 galaxyEnaQ1Ay-4-2-2,1301 galaxyEnaQ1Ay-43,1231 galaxyEnaQ1Ay-43,1301 galaxyEnaQ1Ba-1-17,1231 galaxyEnaQ1Ba-1-17,1301 galaxyEnaQ2Ay-120,1231 galaxyEnaQ2Ay-120,1301 galaxyEnaQ2Ay-122,1231 galaxyEnaQ2Ay-122,1301 galaxyEnaQ2Ay-4,1231 galaxyEnaQ2Ay-4,1301 galaxyEnaQ2Ay-5,1231 galaxyEnaQ2Ay-5,1301 galaxyEnaQ2Ay-6,1231 galaxyEnaQ2Ay-6,1301 galaxyEnaQ3Ay-4,1231 galaxyEnaQ3Ay-4,1301 galaxyEnaQ3Ay-5,1231 galaxyEnaQ3Ay-5,1301 galaxyEnaQ3Ay-9,1231 galaxyEnaQ3Ay-9,1301 galaxyEnaQ3B-1-1-7,1231 galaxyEnaQ3B-1-1-7,1301 galaxyEnaQ3B-1-617-2,1231 galaxyEnaQ3B-1-617-2,1301 been PhyloCSF_smooth,239 PhyloCSFpower,254 Q0_tracks,595 Q0_tracks,604 Q0_tracks,700 Q0_tracks,718 Q0_tracks,737 Q1_tracks,597 Q1_tracks,606 Q1_tracks,702 Q1_tracks,720 Q1_tracks,739 Q2_tracks,597 Q2_tracks,606 Q2_tracks,702 Q2_tracks,720 Q2_tracks,739 Q3_tracks,597 Q3_tracks,606 Q3_tracks,702 Q3_tracks,720 Q3_tracks,739 addgene,104 cas13Crispr,108 galaxyEna,597 galaxyEna,606 galaxyEna,702 galaxyEna,720 galaxyEna,739 galaxyEnaQ0Ba-1,593 galaxyEnaQ0Ba-1,602 galaxyEnaQ0Ba-1,698 galaxyEnaQ0Ba-1,716 galaxyEnaQ0Ba-1,735 galaxyEnaQ0Ba-1-1,593 galaxyEnaQ0Ba-1-1,602 galaxyEnaQ0Ba-1-1,698 galaxyEnaQ0Ba-1-1,716 galaxyEnaQ0Ba-1-1,735 galaxyEnaQ0Ba-1-1-11,593 galaxyEnaQ0Ba-1-1-11,602 galaxyEnaQ0Ba-1-1-11,698 galaxyEnaQ0Ba-1-1-11,716 galaxyEnaQ0Ba-1-1-11,735 galaxyEnaQ0Ba-1-17,593 galaxyEnaQ0Ba-1-17,602 galaxyEnaQ0Ba-1-17,698 galaxyEnaQ0Ba-1-17,716 galaxyEnaQ0Ba-1-17,735 galaxyEnaQ0Ba-2,593 galaxyEnaQ0Ba-2,602 galaxyEnaQ0Ba-2,698 galaxyEnaQ0Ba-2,716 galaxyEnaQ0Ba-2,735 galaxyEnaQ1Ay-4,593 galaxyEnaQ1Ay-4,602 galaxyEnaQ1Ay-4,698 galaxyEnaQ1Ay-4,716 galaxyEnaQ1Ay-4,735 galaxyEnaQ1Ay-4-2,593 galaxyEnaQ1Ay-4-2,602 galaxyEnaQ1Ay-4-2,698 galaxyEnaQ1Ay-4-2,716 galaxyEnaQ1Ay-4-2,735 galaxyEnaQ1Ay-4-2-2,593 galaxyEnaQ1Ay-4-2-2,602 galaxyEnaQ1Ay-4-2-2,698 galaxyEnaQ1Ay-4-2-2,716 galaxyEnaQ1Ay-4-2-2,735 galaxyEnaQ1Ay-43,593 galaxyEnaQ1Ay-43,602 galaxyEnaQ1Ay-43,698 galaxyEnaQ1Ay-43,716 galaxyEnaQ1Ay-43,735 galaxyEnaQ1Ba-1-17,593 galaxyEnaQ1Ba-1-17,602 galaxyEnaQ1Ba-1-17,698 galaxyEnaQ1Ba-1-17,716 galaxyEnaQ1Ba-1-17,735 galaxyEnaQ2Ay-120,593 galaxyEnaQ2Ay-120,602 galaxyEnaQ2Ay-120,698 galaxyEnaQ2Ay-120,716 galaxyEnaQ2Ay-120,735 galaxyEnaQ2Ay-122,593 galaxyEnaQ2Ay-122,602 galaxyEnaQ2Ay-122,698 galaxyEnaQ2Ay-122,716 galaxyEnaQ2Ay-122,735 galaxyEnaQ2Ay-4,593 galaxyEnaQ2Ay-4,602 galaxyEnaQ2Ay-4,698 galaxyEnaQ2Ay-4,716 galaxyEnaQ2Ay-4,735 galaxyEnaQ2Ay-5,593 galaxyEnaQ2Ay-5,602 galaxyEnaQ2Ay-5,698 galaxyEnaQ2Ay-5,716 galaxyEnaQ2Ay-5,735 galaxyEnaQ2Ay-6,593 galaxyEnaQ2Ay-6,602 galaxyEnaQ2Ay-6,698 galaxyEnaQ2Ay-6,716 galaxyEnaQ2Ay-6,735 galaxyEnaQ3Ay-4,593 galaxyEnaQ3Ay-4,602 galaxyEnaQ3Ay-4,698 galaxyEnaQ3Ay-4,716 galaxyEnaQ3Ay-4,735 galaxyEnaQ3Ay-5,593 galaxyEnaQ3Ay-5,602 galaxyEnaQ3Ay-5,698 galaxyEnaQ3Ay-5,716 galaxyEnaQ3Ay-5,735 galaxyEnaQ3Ay-9,593 galaxyEnaQ3Ay-9,602 galaxyEnaQ3Ay-9,698 galaxyEnaQ3Ay-9,716 galaxyEnaQ3Ay-9,735 galaxyEnaQ3B-1-1-7,593 galaxyEnaQ3B-1-1-7,602 galaxyEnaQ3B-1-1-7,698 galaxyEnaQ3B-1-1-7,716 galaxyEnaQ3B-1-1-7,735 galaxyEnaQ3B-1-617-2,593 galaxyEnaQ3B-1-617-2,602 galaxyEnaQ3B-1-617-2,698 galaxyEnaQ3B-1-617-2,716 galaxyEnaQ3B-1-617-2,735 microdel,16 nextstrainSamples,244 nextstrainSamples,262 phyloGenes,115 phyloGenes,141 phyloGenes,157 phyloGenes,214 phyloGenes,237 phyloGenes,267 phyloGenes,318 problematicSites,95 problematicSites,106 problematicSites,118 problematicSites,215 pyle,137 pyle,145 sarsCov2PhyloPub,948 spikeMuts,69 spikeMuts,78 strainCons119way,166 strainCons119way,2091 strainCons44way,114 strainCons44way,1686 unipCov2AliSwissprot,62 unipCov2Chain,32 unipCov2DisulfBond,28 unipCov2Domain,27 unipCov2Interest,34 unipCov2LocCytopl,27 unipCov2LocExtra,27 unipCov2LocSignal,28 unipCov2LocTransMemb,28 unipCov2Modif,31 unipCov2Mut,28 unipCov2Other,28 unipCov2Repeat,26 unipCov2Struct,30 variantMuts,1087 before Q0_tracks,138 Q1_tracks,140 Q2_tracks,140 Q3_tracks,140 galaxyEna,140 galaxyEnaQ0Ba-1,136 galaxyEnaQ0Ba-1-1,136 galaxyEnaQ0Ba-1-1-11,136 galaxyEnaQ0Ba-1-17,136 galaxyEnaQ0Ba-2,136 galaxyEnaQ1Ay-4,136 galaxyEnaQ1Ay-4-2,136 galaxyEnaQ1Ay-4-2-2,136 galaxyEnaQ1Ay-43,136 galaxyEnaQ1Ba-1-17,136 galaxyEnaQ2Ay-120,136 galaxyEnaQ2Ay-122,136 galaxyEnaQ2Ay-4,136 galaxyEnaQ2Ay-5,136 galaxyEnaQ2Ay-6,136 galaxyEnaQ3Ay-4,136 galaxyEnaQ3Ay-5,136 galaxyEnaQ3Ay-9,136 galaxyEnaQ3B-1-1-7,136 galaxyEnaQ3B-1-617-2,136 problematicSites,149 behind Q0_tracks,1108 Q0_tracks,1138 Q1_tracks,1110 Q1_tracks,1140 Q2_tracks,1110 Q2_tracks,1140 Q3_tracks,1110 Q3_tracks,1140 galaxyEna,1110 galaxyEna,1140 galaxyEnaQ0Ba-1,1106 galaxyEnaQ0Ba-1,1136 galaxyEnaQ0Ba-1-1,1106 galaxyEnaQ0Ba-1-1,1136 galaxyEnaQ0Ba-1-1-11,1106 galaxyEnaQ0Ba-1-1-11,1136 galaxyEnaQ0Ba-1-17,1106 galaxyEnaQ0Ba-1-17,1136 galaxyEnaQ0Ba-2,1106 galaxyEnaQ0Ba-2,1136 galaxyEnaQ1Ay-4,1106 galaxyEnaQ1Ay-4,1136 galaxyEnaQ1Ay-4-2,1106 galaxyEnaQ1Ay-4-2,1136 galaxyEnaQ1Ay-4-2-2,1106 galaxyEnaQ1Ay-4-2-2,1136 galaxyEnaQ1Ay-43,1106 galaxyEnaQ1Ay-43,1136 galaxyEnaQ1Ba-1-17,1106 galaxyEnaQ1Ba-1-17,1136 galaxyEnaQ2Ay-120,1106 galaxyEnaQ2Ay-120,1136 galaxyEnaQ2Ay-122,1106 galaxyEnaQ2Ay-122,1136 galaxyEnaQ2Ay-4,1106 galaxyEnaQ2Ay-4,1136 galaxyEnaQ2Ay-5,1106 galaxyEnaQ2Ay-5,1136 galaxyEnaQ2Ay-6,1106 galaxyEnaQ2Ay-6,1136 galaxyEnaQ3Ay-4,1106 galaxyEnaQ3Ay-4,1136 galaxyEnaQ3Ay-5,1106 galaxyEnaQ3Ay-5,1136 galaxyEnaQ3Ay-9,1106 galaxyEnaQ3Ay-9,1136 galaxyEnaQ3B-1-1-7,1106 galaxyEnaQ3B-1-1-7,1136 galaxyEnaQ3B-1-617-2,1106 galaxyEnaQ3B-1-617-2,1136 potPathoIndel,30 vaccines,469 vaccines,599 beijing pbm,21 being multiz7way,550 pbmShanghai,320 pbmShanghai,328 strainCons119way,900 strainCons44way,848 bejerano multiz7way,1038 strainCons119way,2416 strainCons44way,2011 believe pond,59 bell nextstrainClade,246 nextstrainFreq,381 nextstrainGene,195 nextstrainParsimony,448 nextstrainSamples,1001 belong rfam,71 belonging nextstrainParsimony,178 nextstrainSamples,285 belongs strainCons119way,185 strainCons44way,133 below Calu3_07hpi,304 ORFs,302 Vero6_05hpi,304 Vero6_24hpi,304 abEscape,60 bloomEscMabAvg,64 bloomEscMax,70 bloomEscSerumAvg,65 bloomEscTop,68 contacts,120 epitopes,86 escape,67 genscan,154 genscan,168 mccoy,60 multiz7way,73 rapid,210 rappuoli,67 rosettaMhc,341 rosettaMhc,361 vaccines,203 weizmanOrfs,310 benjamin variantMuts,1481 benson simpleRepeat,64 simpleRepeat,72 simpleRepeat,74 berlin primers,204 berman pdb,133 unipCov2Chain,657 unipCov2DisulfBond,653 unipCov2Domain,652 unipCov2LocCytopl,652 unipCov2LocExtra,652 unipCov2LocSignal,653 unipCov2LocTransMemb,653 unipCov2Modif,656 unipCov2Mut,653 unipCov2Other,653 unipCov2Repeat,651 unipCov2Struct,655 bern spikeMuts,369 spikeMuts,405 spikeMuts,406 bert vaccines,529 best PhyloCSF_smooth,529 PhyloCSFpower,544 rapid,183 swift,120 best-characterized epitopes,243 best-practice Q0_tracks,85 Q1_tracks,87 Q2_tracks,87 Q3_tracks,87 galaxyEna,87 galaxyEnaQ0Ba-1,83 galaxyEnaQ0Ba-1-1,83 galaxyEnaQ0Ba-1-1-11,83 galaxyEnaQ0Ba-1-17,83 galaxyEnaQ0Ba-2,83 galaxyEnaQ1Ay-4,83 galaxyEnaQ1Ay-4-2,83 galaxyEnaQ1Ay-4-2-2,83 galaxyEnaQ1Ay-43,83 galaxyEnaQ1Ba-1-17,83 galaxyEnaQ2Ay-120,83 galaxyEnaQ2Ay-122,83 galaxyEnaQ2Ay-4,83 galaxyEnaQ2Ay-5,83 galaxyEnaQ2Ay-6,83 galaxyEnaQ3Ay-4,83 galaxyEnaQ3Ay-5,83 galaxyEnaQ3Ay-9,83 galaxyEnaQ3B-1-1-7,83 galaxyEnaQ3B-1-617-2,83 beta unipCov2Chain,223 unipCov2DisulfBond,219 unipCov2Domain,218 unipCov2LocCytopl,218 unipCov2LocExtra,218 unipCov2LocSignal,219 unipCov2LocTransMemb,219 unipCov2Modif,222 unipCov2Mut,219 unipCov2Other,219 unipCov2Repeat,217 unipCov2Struct,221 variantAaMutsV2_B_1_351,1 variantAaMutsV2_B_1_351,4 variantMuts,285 variantNucMutsV2_B_1_351,1 variantNucMutsV2_B_1_351,4 betacoronavirus-3utr rfam,68 betacoronavirus-5utr rfam,66 betacoronaviruses primers,186 primers,219 better IgG_Z-score-_COVID-19_patients,238 IgM_Z-score-_COVID-19_patients,238 PhyloCSF_smooth,513 PhyloCSFpower,528 abEscape,244 bloomEscMabAvg,248 bloomEscMax,254 bloomEscSerumAvg,249 bloomEscTop,252 bpmIggCovidSum,247 bpmIgmCovidSum,247 escape,251 mccoy,244 pbm,247 pbmShanghai,386 rappuoli,251 betts vaccines,507 between PhyloCSF_smooth,324 PhyloCSF_smooth,520 PhyloCSFpower,339 PhyloCSFpower,535 contacts,168 galaxyEnaQ0Ba-1,9 galaxyEnaQ0Ba-1-1,9 galaxyEnaQ0Ba-1-1-11,9 galaxyEnaQ0Ba-1-17,9 galaxyEnaQ0Ba-2,9 galaxyEnaQ1Ay-4,9 galaxyEnaQ1Ay-4-2,9 galaxyEnaQ1Ay-4-2-2,9 galaxyEnaQ1Ay-43,9 galaxyEnaQ1Ba-1-17,9 galaxyEnaQ2Ay-120,9 galaxyEnaQ2Ay-122,9 galaxyEnaQ2Ay-4,9 galaxyEnaQ2Ay-5,9 galaxyEnaQ2Ay-6,9 galaxyEnaQ3Ay-4,9 galaxyEnaQ3Ay-5,9 galaxyEnaQ3Ay-9,9 galaxyEnaQ3B-1-1-7,9 galaxyEnaQ3B-1-617-2,9 gold,97 gold,102 icshape,76 pond,30 potPathoIndel,119 pyle,93 rosettaMhc,151 sarsCov2Phylo,493 sarsCov2PhyloPub,522 strainCons119way,383 strainCons119way,416 strainCons119way,2137 strainCons44way,331 strainCons44way,364 strainCons44way,1732 unipCov2Chain,234 unipCov2DisulfBond,230 unipCov2Domain,229 unipCov2LocCytopl,229 unipCov2LocExtra,229 unipCov2LocSignal,230 unipCov2LocTransMemb,230 unipCov2Modif,233 unipCov2Mut,230 unipCov2Other,230 unipCov2Repeat,228 unipCov2Struct,232 vaccines,138 betwen gordon2,76 bfdr gordon2,164 bgr strainCons119way,1293 strainCons44way,1145 bhat pdb,141 bi-allelic nextstrainSamples,228 nextstrainSamplesRb,2 nextstrainSamplesRb,4 bigbed IgG_Z-score-_COVID-19_patients,314 IgM_Z-score-_COVID-19_patients,314 Q0_tracks,775 Q0_tracks,1100 Q1_tracks,777 Q1_tracks,1102 Q2_tracks,777 Q2_tracks,1102 Q3_tracks,777 Q3_tracks,1102 addgene,235 artic,63 artic,97 articV4,63 articV4,97 articV4_1,74 articV4_1,110 bpmIggCovidSum,323 bpmIgmCovidSum,323 cas13Crispr,382 contacts,310 galaxyEna,777 galaxyEna,1102 galaxyEnaQ0Ba-1,773 galaxyEnaQ0Ba-1,1098 galaxyEnaQ0Ba-1-1,773 galaxyEnaQ0Ba-1-1,1098 galaxyEnaQ0Ba-1-1-11,773 galaxyEnaQ0Ba-1-1-11,1098 galaxyEnaQ0Ba-1-17,773 galaxyEnaQ0Ba-1-17,1098 galaxyEnaQ0Ba-2,773 galaxyEnaQ0Ba-2,1098 galaxyEnaQ1Ay-4,773 galaxyEnaQ1Ay-4,1098 galaxyEnaQ1Ay-4-2,773 galaxyEnaQ1Ay-4-2,1098 galaxyEnaQ1Ay-4-2-2,773 galaxyEnaQ1Ay-4-2-2,1098 galaxyEnaQ1Ay-43,773 galaxyEnaQ1Ay-43,1098 galaxyEnaQ1Ba-1-17,773 galaxyEnaQ1Ba-1-17,1098 galaxyEnaQ2Ay-120,773 galaxyEnaQ2Ay-120,1098 galaxyEnaQ2Ay-122,773 galaxyEnaQ2Ay-122,1098 galaxyEnaQ2Ay-4,773 galaxyEnaQ2Ay-4,1098 galaxyEnaQ2Ay-5,773 galaxyEnaQ2Ay-5,1098 galaxyEnaQ2Ay-6,773 galaxyEnaQ2Ay-6,1098 galaxyEnaQ3Ay-4,773 galaxyEnaQ3Ay-4,1098 galaxyEnaQ3Ay-5,773 galaxyEnaQ3Ay-5,1098 galaxyEnaQ3Ay-9,773 galaxyEnaQ3Ay-9,1098 galaxyEnaQ3B-1-1-7,773 galaxyEnaQ3B-1-1-7,1098 galaxyEnaQ3B-1-617-2,773 galaxyEnaQ3B-1-617-2,1098 kimRnaMod,144 kimTranscripts,361 ncbiGeneBGP,66 ncbiProducts,82 nextstrainClade,183 nextstrainFreq,175 nextstrainGene,133 pbm,323 pbmShanghai,440 phyloGenes,358 poranHla1,171 poranHla2,171 problematicSites,502 rapid,201 rapid,251 recomb,277 resist,110 resistPred,202 swift,139 swift,180 transcriptome,367 treangen,165 unipCov2AliSwissprot,287 unipCov2Chain,517 unipCov2DisulfBond,513 unipCov2Domain,512 unipCov2Interest,193 unipCov2LocCytopl,512 unipCov2LocExtra,512 unipCov2LocSignal,513 unipCov2LocTransMemb,513 unipCov2Modif,516 unipCov2Mut,513 unipCov2Other,513 unipCov2Repeat,511 unipCov2Struct,515 variantMuts,978 varskip,69 varskip,103 bigbedtobed IgG_Z-score-_COVID-19_patients,337 IgG_Z-score-_COVID-19_patients,369 IgM_Z-score-_COVID-19_patients,337 IgM_Z-score-_COVID-19_patients,369 artic,120 artic,152 articV4,120 articV4,152 articV4_1,133 articV4_1,165 bpmIggCovidSum,346 bpmIggCovidSum,378 bpmIgmCovidSum,346 bpmIgmCovidSum,378 cas13Crispr,405 cas13Crispr,437 contacts,333 contacts,365 kimRnaMod,167 kimRnaMod,199 kimTranscripts,384 kimTranscripts,416 ncbiGeneBGP,86 ncbiGeneBGP,133 ncbiProducts,102 ncbiProducts,149 pbm,346 pbm,378 pbmShanghai,463 phyloGenes,381 phyloGenes,413 poranHla1,194 poranHla1,226 poranHla2,194 poranHla2,226 rapid,274 rapid,306 swift,203 swift,235 transcriptome,390 transcriptome,422 unipCov2AliSwissprot,318 unipCov2AliSwissprot,363 unipCov2Chain,548 unipCov2Chain,593 unipCov2DisulfBond,544 unipCov2DisulfBond,589 unipCov2Domain,543 unipCov2Domain,588 unipCov2Interest,224 unipCov2Interest,269 unipCov2LocCytopl,543 unipCov2LocCytopl,588 unipCov2LocExtra,543 unipCov2LocExtra,588 unipCov2LocSignal,544 unipCov2LocSignal,589 unipCov2LocTransMemb,544 unipCov2LocTransMemb,589 unipCov2Modif,547 unipCov2Modif,592 unipCov2Mut,544 unipCov2Mut,589 unipCov2Other,544 unipCov2Other,589 unipCov2Repeat,542 unipCov2Repeat,587 unipCov2Struct,546 unipCov2Struct,591 vaccines,408 varskip,126 varskip,158 bigd strainCons119way,107 bigheat IgG_Z-score-_COVID-19_patients,219 IgM_Z-score-_COVID-19_patients,219 bpmIggCovidSum,228 bpmIgmCovidSum,228 pbm,228 pbmShanghai,375 bigpsl vaccines,109 vaccines,378 bigpsl.as vaccines,350 bigwig PhyloCSF_smooth,627 icshape,38 icshape,86 nextstrainFreq,181 nextstrainParsimony,345 pyle,255 bigwigtowig icshape,147 nextstrainFreq,236 binaries ncbiGeneBGP,110 ncbiProducts,126 unipCov2AliSwissprot,342 unipCov2Chain,572 unipCov2DisulfBond,568 unipCov2Domain,567 unipCov2Interest,248 unipCov2LocCytopl,567 unipCov2LocExtra,567 unipCov2LocSignal,568 unipCov2LocTransMemb,568 unipCov2Modif,571 unipCov2Mut,568 unipCov2Other,568 unipCov2Repeat,566 unipCov2Struct,570 vaccines,432 binary IgG_Z-score-_COVID-19_patients,329 IgM_Z-score-_COVID-19_patients,329 artic,112 articV4,112 articV4_1,125 bpmIggCovidSum,338 bpmIgmCovidSum,338 cas13Crispr,397 contacts,325 cpgIslandExt,570 cpgIslandExtUnmasked,573 cpgIslandSuper,570 kimRnaMod,159 kimTranscripts,376 ncbiGeneBGP,100 ncbiProducts,116 pbm,338 pbmShanghai,455 phyloGenes,373 poranHla1,186 poranHla2,186 rapid,266 swift,195 transcriptome,382 unipCov2AliSwissprot,332 unipCov2Chain,562 unipCov2DisulfBond,558 unipCov2Domain,557 unipCov2Interest,238 unipCov2LocCytopl,557 unipCov2LocExtra,557 unipCov2LocSignal,558 unipCov2LocTransMemb,558 unipCov2Modif,561 unipCov2Mut,558 unipCov2Other,558 unipCov2Repeat,556 unipCov2Struct,560 vaccines,422 varskip,118 bind Starr_Bloom_bind,3 binders rosettaMhc,276 binding A_bind_avg,6 C_bind_avg,6 D_bind_avg,6 E_bind_avg,6 F_bind_avg,6 G_bind_avg,6 H_bind_avg,6 I_bind_avg,6 K_bind_avg,6 L_bind_avg,6 M_bind_avg,6 N_bind_avg,6 P_bind_avg,6 Q0_tracks,153 Q1_tracks,155 Q2_tracks,155 Q3_tracks,155 Q_bind_avg,6 R_bind_avg,6 S_bind_avg,6 Starr_Bloom,34 Starr_Bloom,71 Starr_Bloom,266 Starr_Bloom,274 Starr_Bloom_bind,10 Starr_Bloom_bind,99 Starr_Bloom_bind,129 Starr_Bloom_bind,137 Starr_Bloom_bind,260 Starr_Bloom_bind,268 T_bind_avg,6 V_bind_avg,6 W_bind_avg,6 Y_bind_avg,6 abEscape,43 abEscape,170 abEscape,303 bloomEscMabAvg,47 bloomEscMabAvg,174 bloomEscMabAvg,307 bloomEscMax,53 bloomEscMax,180 bloomEscMax,313 bloomEscSerumAvg,48 bloomEscSerumAvg,175 bloomEscSerumAvg,308 bloomEscTop,51 bloomEscTop,178 bloomEscTop,311 bpmIggCovidSum,9 bpmIgmCovidSum,9 cas13Crispr,62 cd8escape,150 escape,50 escape,177 escape,310 galaxyEna,155 galaxyEnaQ0Ba-1,151 galaxyEnaQ0Ba-1-1,151 galaxyEnaQ0Ba-1-1-11,151 galaxyEnaQ0Ba-1-17,151 galaxyEnaQ0Ba-2,151 galaxyEnaQ1Ay-4,151 galaxyEnaQ1Ay-4-2,151 galaxyEnaQ1Ay-4-2-2,151 galaxyEnaQ1Ay-43,151 galaxyEnaQ1Ba-1-17,151 galaxyEnaQ2Ay-120,151 galaxyEnaQ2Ay-122,151 galaxyEnaQ2Ay-4,151 galaxyEnaQ2Ay-5,151 galaxyEnaQ2Ay-6,151 galaxyEnaQ3Ay-4,151 galaxyEnaQ3Ay-5,151 galaxyEnaQ3Ay-9,151 galaxyEnaQ3B-1-1-7,151 galaxyEnaQ3B-1-617-2,151 igg,7 iggAllSum,9 igm,7 igmAllSum,9 mccoy,43 mccoy,170 mccoy,303 pbm,7 pbmShanghai,9 poranHla1,22 poranHla2,22 rappuoli,50 rappuoli,177 rappuoli,310 resistPred,39 resistPred,111 rosettaMhc,210 rosettaMhc,213 rosettaMhc,232 rosettaMhc,236 rosettaMhc,241 rosettaMhc,296 rosettaMhc,318 spikeMuts,199 binds spikeMuts,20 binshtein abEscape,733 bloomEscMabAvg,737 bloomEscMax,743 bloomEscSerumAvg,738 bloomEscTop,741 escape,740 mccoy,733 rappuoli,740 biocomput multiz7way,1225 strainCons119way,2603 strainCons44way,2198 bioconda variantMuts,867 biodata microdel,300 bioinformatic-based epitopes,82 epitopes,342 bioinformatics PhyloCSF_smooth,721 PhyloCSFpower,691 augustusGene,307 augustusGene,332 multiz7way,54 multiz7way,843 nextstrainClade,266 nextstrainFreq,401 nextstrainGene,215 nextstrainParsimony,468 nextstrainSamples,1021 phyloGenes,512 poranHla1,287 poranHla2,287 primers,377 strainCons119way,147 strainCons119way,2221 strainCons44way,95 strainCons44way,1816 variantMuts,1039 variantMuts,1455 windowmaskerSdust,106 bioinformation sarsCov2PhyloPub,41 biol cpgIslandExt,615 cpgIslandExtUnmasked,618 cpgIslandSuper,615 genscan,222 multiz7way,1000 nextstrainSamples,1074 phyloGenes,543 pond,292 rapid,365 sarsCov2Phylo,1038 sarsCov2PhyloPub,1158 strainCons119way,2378 strainCons44way,1973 biolabs varskip,6 biological Calu3_07hpi,129 ORFs,127 Vero6_05hpi,129 Vero6_24hpi,129 weizmanOrfs,135 biology genscan,200 biome primers,376 bionformatic epitopes,265 biontech vaccines,4 vaccines,28 vaccines,41 vaccines,217 vaccines,538 biorxiv PhyloCSF_smooth,802 PhyloCSFpower,779 abEscape,112 abEscape,152 abEscape,185 abEscape,212 abEscape,229 abEscape,721 abEscape,823 abEscape,853 abEscape,900 bloomEscMabAvg,116 bloomEscMabAvg,156 bloomEscMabAvg,189 bloomEscMabAvg,216 bloomEscMabAvg,233 bloomEscMabAvg,725 bloomEscMabAvg,827 bloomEscMabAvg,857 bloomEscMabAvg,904 bloomEscMax,122 bloomEscMax,162 bloomEscMax,195 bloomEscMax,222 bloomEscMax,239 bloomEscMax,731 bloomEscMax,833 bloomEscMax,863 bloomEscMax,910 bloomEscSerumAvg,117 bloomEscSerumAvg,157 bloomEscSerumAvg,190 bloomEscSerumAvg,217 bloomEscSerumAvg,234 bloomEscSerumAvg,726 bloomEscSerumAvg,828 bloomEscSerumAvg,858 bloomEscSerumAvg,905 bloomEscTop,120 bloomEscTop,160 bloomEscTop,193 bloomEscTop,220 bloomEscTop,237 bloomEscTop,729 bloomEscTop,831 bloomEscTop,861 bloomEscTop,908 cas13Crispr,521 epitopes,344 escape,119 escape,159 escape,192 escape,219 escape,236 escape,728 escape,830 escape,860 escape,907 gordon2,186 gordon2,268 icshape,227 mccoy,112 mccoy,152 mccoy,185 mccoy,212 mccoy,229 mccoy,721 mccoy,823 mccoy,853 mccoy,900 poranHla1,290 poranHla2,290 problematicSites,606 pyle,303 pyle,330 rappuoli,119 rappuoli,159 rappuoli,192 rappuoli,219 rappuoli,236 rappuoli,728 rappuoli,830 rappuoli,860 rappuoli,907 rnaStructRangan,26 rnaStructRangan,121 rosettaMhc,398 sarsCov2Phylo,1117 sarsCov2PhyloPub,1250 treangen,325 biosciences crisprDet,34 crisprDet,58 swift,4 swift,146 biotechnology Q0_tracks,1348 Q1_tracks,1350 Q2_tracks,1350 Q3_tracks,1350 galaxyEna,1350 galaxyEnaQ0Ba-1,1346 galaxyEnaQ0Ba-1-1,1346 galaxyEnaQ0Ba-1-1-11,1346 galaxyEnaQ0Ba-1-17,1346 galaxyEnaQ0Ba-2,1346 galaxyEnaQ1Ay-4,1346 galaxyEnaQ1Ay-4-2,1346 galaxyEnaQ1Ay-4-2-2,1346 galaxyEnaQ1Ay-43,1346 galaxyEnaQ1Ba-1-17,1346 galaxyEnaQ2Ay-120,1346 galaxyEnaQ2Ay-122,1346 galaxyEnaQ2Ay-4,1346 galaxyEnaQ2Ay-5,1346 galaxyEnaQ2Ay-6,1346 galaxyEnaQ3Ay-4,1346 galaxyEnaQ3Ay-5,1346 galaxyEnaQ3Ay-9,1346 galaxyEnaQ3B-1-1-7,1346 galaxyEnaQ3B-1-617-2,1346 birds augustusGene,203 bit.ly publicAnnots,8 publicAnnots,26 black Q0_tracks,457 Q1_tracks,459 Q2_tracks,459 Q3_tracks,459 epitopes,58 galaxyEna,459 galaxyEnaQ0Ba-1,455 galaxyEnaQ0Ba-1-1,455 galaxyEnaQ0Ba-1-1-11,455 galaxyEnaQ0Ba-1-17,455 galaxyEnaQ0Ba-2,455 galaxyEnaQ1Ay-4,455 galaxyEnaQ1Ay-4-2,455 galaxyEnaQ1Ay-4-2-2,455 galaxyEnaQ1Ay-43,455 galaxyEnaQ1Ba-1-17,455 galaxyEnaQ2Ay-120,455 galaxyEnaQ2Ay-122,455 galaxyEnaQ2Ay-4,455 galaxyEnaQ2Ay-5,455 galaxyEnaQ2Ay-6,455 galaxyEnaQ3Ay-4,455 galaxyEnaQ3Ay-5,455 galaxyEnaQ3Ay-9,455 galaxyEnaQ3B-1-1-7,455 galaxyEnaQ3B-1-617-2,455 gap,71 gap,110 nextstrainSamples,409 sarsCov2Phylo,442 sarsCov2PhyloPub,471 vaccines,133 blanchette multiz7way,1167 strainCons119way,2545 strainCons44way,2140 blankenberg Q0_tracks,1235 Q1_tracks,1237 Q2_tracks,1237 Q3_tracks,1237 galaxyEna,1237 galaxyEnaQ0Ba-1,1233 galaxyEnaQ0Ba-1-1,1233 galaxyEnaQ0Ba-1-1-11,1233 galaxyEnaQ0Ba-1-17,1233 galaxyEnaQ0Ba-2,1233 galaxyEnaQ1Ay-4,1233 galaxyEnaQ1Ay-4-2,1233 galaxyEnaQ1Ay-4-2-2,1233 galaxyEnaQ1Ay-43,1233 galaxyEnaQ1Ba-1-17,1233 galaxyEnaQ2Ay-120,1233 galaxyEnaQ2Ay-122,1233 galaxyEnaQ2Ay-4,1233 galaxyEnaQ2Ay-5,1233 galaxyEnaQ2Ay-6,1233 galaxyEnaQ3Ay-4,1233 galaxyEnaQ3Ay-5,1233 galaxyEnaQ3Ay-9,1233 galaxyEnaQ3B-1-1-7,1233 galaxyEnaQ3B-1-617-2,1233 blast addgene,185 blastn addgene,201 blastz multiz7way,826 multiz7way,1211 multiz7way,1264 strainCons119way,2204 strainCons119way,2589 strainCons119way,2642 strainCons44way,1799 strainCons44way,2184 strainCons44way,2237 blat crisprDet,141 pdb,112 primers,289 unipCov2AliSwissprot,162 unipCov2Chain,415 unipCov2DisulfBond,411 unipCov2Domain,410 unipCov2Interest,91 unipCov2LocCytopl,410 unipCov2LocExtra,410 unipCov2LocSignal,411 unipCov2LocTransMemb,411 unipCov2Modif,414 unipCov2Mut,411 unipCov2Other,411 unipCov2Repeat,409 unipCov2Struct,413 vaccines,104 vaccines,235 blat-ing targets,218 blob microdel,214 nextstrainClade,92 blocks contacts,50 contacts,145 gold,107 gold,134 multiz7way,105 multiz7way,168 multiz7way,175 multiz7way,197 multiz7way,219 multiz7way,232 strainCons119way,454 strainCons119way,517 strainCons119way,524 strainCons119way,546 strainCons119way,568 strainCons119way,581 strainCons44way,402 strainCons44way,465 strainCons44way,472 strainCons44way,494 strainCons44way,516 strainCons44way,529 blockset multiz7way,1196 strainCons119way,2574 strainCons44way,2169 blog cpgIslandExt,553 cpgIslandExtUnmasked,556 cpgIslandSuper,553 bloom A_120Max,5 A_120Total,5 A_21Max,5 A_21Total,5 A_45Max,5 A_45Total,5 B_113Max,5 B_113Total,5 B_26Max,5 B_26Total,5 COV2-2050Max,3 COV2-2050Total,4 COV2-2082Max,3 COV2-2082Total,4 COV2-2094Max,3 COV2-2094Total,4 COV2-2096Max,3 COV2-2096Total,4 COV2-2165Max,3 COV2-2165Total,4 COV2-2479Max,3 COV2-2479Total,4 COV2-2499Max,3 COV2-2499Total,4 COV2-2677Max,3 COV2-2677Total,4 COV2-2832Max,3 COV2-2832Total,4 C_104Max,5 C_104Total,5 C_32Max,5 C_32Total,5 D_33Max,5 D_33Total,5 D_76Max,5 D_76Total,5 E_104Max,5 E_104Total,5 E_28Max,5 E_28Total,5 F_115Max,5 F_115Total,5 F_48Max,5 F_48Total,5 G_18Max,5 G_18Total,5 G_94Max,5 G_94Total,5 H_152Max,5 H_152Total,5 H_61Max,5 H_61Total,5 I_102Max,5 I_102Total,5 I_26Max,5 I_26Total,5 J_121Max,5 J_121Total,5 J_15Max,5 J_15Total,5 K_103Max,5 K_103Total,5 K_29Max,5 K_29Total,5 LY-CoV016Max,3 LY-CoV016Total,4 REGN10933-REGN10987Max,3 REGN10933-REGN10987Total,4 REGN10933Max,3 REGN10933Total,4 REGN10987Max,3 REGN10987Total,4 Starr_Bloom,11 Starr_Bloom_bind,12 abEscape,10 abEscape,62 abEscape,88 abEscape,114 abEscape,133 abEscape,233 abEscape,272 abEscape,702 abEscape,839 bloomEscMabAvg,1 bloomEscMabAvg,4 bloomEscMabAvg,66 bloomEscMabAvg,92 bloomEscMabAvg,118 bloomEscMabAvg,137 bloomEscMabAvg,237 bloomEscMabAvg,276 bloomEscMabAvg,706 bloomEscMabAvg,843 bloomEscMax,1 bloomEscMax,4 bloomEscMax,72 bloomEscMax,98 bloomEscMax,124 bloomEscMax,143 bloomEscMax,243 bloomEscMax,282 bloomEscMax,712 bloomEscMax,849 bloomEscSerumAvg,1 bloomEscSerumAvg,4 bloomEscSerumAvg,67 bloomEscSerumAvg,93 bloomEscSerumAvg,119 bloomEscSerumAvg,138 bloomEscSerumAvg,238 bloomEscSerumAvg,277 bloomEscSerumAvg,707 bloomEscSerumAvg,844 bloomEscTop,1 bloomEscTop,4 bloomEscTop,70 bloomEscTop,96 bloomEscTop,122 bloomEscTop,141 bloomEscTop,241 bloomEscTop,280 bloomEscTop,710 bloomEscTop,847 bloomEscTotal,1 bloomEscTotal,4 escape,69 escape,95 escape,121 escape,140 escape,240 escape,279 escape,709 escape,846 mccoy,62 mccoy,88 mccoy,114 mccoy,133 mccoy,233 mccoy,272 mccoy,702 mccoy,839 rCR3022Max,3 rCR3022Total,4 rappuoli,69 rappuoli,95 rappuoli,121 rappuoli,140 rappuoli,240 rappuoli,279 rappuoli,709 rappuoli,846 spikeMuts,193 bloyet abEscape,780 bloomEscMabAvg,784 bloomEscMax,790 bloomEscSerumAvg,785 bloomEscTop,788 escape,787 mccoy,780 rappuoli,787 blue IgG_Z-score-_COVID-19_patients,144 IgM_Z-score-_COVID-19_patients,144 abEscape,410 abEscape,466 bloomEscMabAvg,414 bloomEscMabAvg,470 bloomEscMax,420 bloomEscMax,476 bloomEscSerumAvg,415 bloomEscSerumAvg,471 bloomEscTop,418 bloomEscTop,474 bpmIggCovidSum,153 bpmIgmCovidSum,153 epitopes,50 escape,417 escape,473 mccoy,410 mccoy,466 multiz7way,218 pbm,153 rappuoli,417 rappuoli,473 strainCons119way,340 strainCons119way,567 strainCons44way,288 strainCons44way,515 strainName119way,12 strainName44way,17 unipCov2Chain,318 unipCov2Chain,392 unipCov2DisulfBond,314 unipCov2DisulfBond,388 unipCov2Domain,313 unipCov2Domain,387 unipCov2LocCytopl,313 unipCov2LocCytopl,387 unipCov2LocExtra,313 unipCov2LocExtra,387 unipCov2LocSignal,314 unipCov2LocSignal,388 unipCov2LocTransMemb,314 unipCov2LocTransMemb,388 unipCov2Modif,317 unipCov2Modif,391 unipCov2Mut,314 unipCov2Mut,388 unipCov2Other,314 unipCov2Other,388 unipCov2Repeat,312 unipCov2Repeat,386 unipCov2Struct,316 unipCov2Struct,390 blueoldest spikeMuts,210 blueother spikeMuts,202 bm48-31 strainCons119way,1292 strainCons44way,1144 bmc sarsCov2Phylo,1164 sarsCov2PhyloPub,1297 bnt-162b2 vaccines,6 vaccines,30 vaccines,43 vaccines,219 vaccines,523 bnt162b2 vaccines,473 body Calu3_07hpi,190 ORFs,188 Vero6_05hpi,190 Vero6_24hpi,190 kimTranscripts,68 transcriptome,60 weizmanOrfs,196 bond unipCov2AliSwissprot,99 unipCov2Chain,284 unipCov2DisulfBond,280 unipCov2Domain,279 unipCov2LocCytopl,279 unipCov2LocExtra,279 unipCov2LocSignal,280 unipCov2LocTransMemb,280 unipCov2Modif,283 unipCov2Mut,280 unipCov2Other,280 unipCov2Repeat,278 unipCov2Struct,282 bonds unipCov2Chain,193 unipCov2Chain,195 unipCov2DisulfBond,2 unipCov2DisulfBond,5 unipCov2DisulfBond,189 unipCov2DisulfBond,191 unipCov2Domain,188 unipCov2Domain,190 unipCov2LocCytopl,188 unipCov2LocCytopl,190 unipCov2LocExtra,188 unipCov2LocExtra,190 unipCov2LocSignal,189 unipCov2LocSignal,191 unipCov2LocTransMemb,189 unipCov2LocTransMemb,191 unipCov2Modif,192 unipCov2Modif,194 unipCov2Mut,189 unipCov2Mut,191 unipCov2Other,189 unipCov2Other,191 unipCov2Repeat,187 unipCov2Repeat,189 unipCov2Struct,191 unipCov2Struct,193 borges problematicSites,543 sarsCov2Phylo,1054 sarsCov2PhyloPub,1174 bot Q0_tracks,962 Q0_tracks,985 Q1_tracks,964 Q1_tracks,987 Q2_tracks,964 Q2_tracks,987 Q3_tracks,964 Q3_tracks,987 galaxyEna,964 galaxyEna,987 galaxyEnaQ0Ba-1,960 galaxyEnaQ0Ba-1,983 galaxyEnaQ0Ba-1-1,960 galaxyEnaQ0Ba-1-1,983 galaxyEnaQ0Ba-1-1-11,960 galaxyEnaQ0Ba-1-1-11,983 galaxyEnaQ0Ba-1-17,960 galaxyEnaQ0Ba-1-17,983 galaxyEnaQ0Ba-2,960 galaxyEnaQ0Ba-2,983 galaxyEnaQ1Ay-4,960 galaxyEnaQ1Ay-4,983 galaxyEnaQ1Ay-4-2,960 galaxyEnaQ1Ay-4-2,983 galaxyEnaQ1Ay-4-2-2,960 galaxyEnaQ1Ay-4-2-2,983 galaxyEnaQ1Ay-43,960 galaxyEnaQ1Ay-43,983 galaxyEnaQ1Ba-1-17,960 galaxyEnaQ1Ba-1-17,983 galaxyEnaQ2Ay-120,960 galaxyEnaQ2Ay-120,983 galaxyEnaQ2Ay-122,960 galaxyEnaQ2Ay-122,983 galaxyEnaQ2Ay-4,960 galaxyEnaQ2Ay-4,983 galaxyEnaQ2Ay-5,960 galaxyEnaQ2Ay-5,983 galaxyEnaQ2Ay-6,960 galaxyEnaQ2Ay-6,983 galaxyEnaQ3Ay-4,960 galaxyEnaQ3Ay-4,983 galaxyEnaQ3Ay-5,960 galaxyEnaQ3Ay-5,983 galaxyEnaQ3Ay-9,960 galaxyEnaQ3Ay-9,983 galaxyEnaQ3B-1-1-7,960 galaxyEnaQ3B-1-1-7,983 galaxyEnaQ3B-1-617-2,960 galaxyEnaQ3B-1-617-2,983 both IgG_Z-score-_COVID-19_patients,51 IgM_Z-score-_COVID-19_patients,51 Starr_Bloom,188 Starr_Bloom_bind,182 bpmIggCovidSum,60 bpmIgmCovidSum,60 pbm,60 pbmShanghai,60 poranHla1,34 poranHla1,119 poranHla2,34 poranHla2,119 sarsCov2Phylo,140 strainCons119way,387 strainCons119way,1671 strainCons119way,1803 strainCons119way,1952 strainCons119way,2056 strainCons44way,335 strainCons44way,1266 strainCons44way,1398 strainCons44way,1547 strainCons44way,1651 variantMuts,763 bottom nextstrainFreq,341 nextstrainParsimony,389 nextstrainSamples,423 nextstrainSamples,716 nextstrainSamples,980 sarsCov2Phylo,459 sarsCov2PhyloPub,488 boundaries gold,82 bourne pdb,147 bouvier Q0_tracks,1237 Q0_tracks,1305 Q1_tracks,1239 Q1_tracks,1307 Q2_tracks,1239 Q2_tracks,1307 Q3_tracks,1239 Q3_tracks,1307 galaxyEna,1239 galaxyEna,1307 galaxyEnaQ0Ba-1,1235 galaxyEnaQ0Ba-1,1303 galaxyEnaQ0Ba-1-1,1235 galaxyEnaQ0Ba-1-1,1303 galaxyEnaQ0Ba-1-1-11,1235 galaxyEnaQ0Ba-1-1-11,1303 galaxyEnaQ0Ba-1-17,1235 galaxyEnaQ0Ba-1-17,1303 galaxyEnaQ0Ba-2,1235 galaxyEnaQ0Ba-2,1303 galaxyEnaQ1Ay-4,1235 galaxyEnaQ1Ay-4,1303 galaxyEnaQ1Ay-4-2,1235 galaxyEnaQ1Ay-4-2,1303 galaxyEnaQ1Ay-4-2-2,1235 galaxyEnaQ1Ay-4-2-2,1303 galaxyEnaQ1Ay-43,1235 galaxyEnaQ1Ay-43,1303 galaxyEnaQ1Ba-1-17,1235 galaxyEnaQ1Ba-1-17,1303 galaxyEnaQ2Ay-120,1235 galaxyEnaQ2Ay-120,1303 galaxyEnaQ2Ay-122,1235 galaxyEnaQ2Ay-122,1303 galaxyEnaQ2Ay-4,1235 galaxyEnaQ2Ay-4,1303 galaxyEnaQ2Ay-5,1235 galaxyEnaQ2Ay-5,1303 galaxyEnaQ2Ay-6,1235 galaxyEnaQ2Ay-6,1303 galaxyEnaQ3Ay-4,1235 galaxyEnaQ3Ay-4,1303 galaxyEnaQ3Ay-5,1235 galaxyEnaQ3Ay-5,1303 galaxyEnaQ3Ay-9,1235 galaxyEnaQ3Ay-9,1303 galaxyEnaQ3B-1-1-7,1235 galaxyEnaQ3B-1-1-7,1303 galaxyEnaQ3B-1-617-2,1235 galaxyEnaQ3B-1-617-2,1303 bowen Starr_Bloom,252 Starr_Bloom_bind,246 bowtie cas13Crispr,323 box gap,111 spikeMuts,239 box.com treangen,285 boxes gap,72 kimTranscripts,117 transcriptome,109 boyd vaccines,509 bp cpgIslandExt,272 cpgIslandExtUnmasked,275 cpgIslandSuper,272 kimIvtCov,94 rapid,49 rapid,357 bpaa014 rapid,371 bps microdel,96 bq nextstrainSamples,1061 bq.1 variantAaMuts_BQ_1,2 variantAaMuts_BQ_1,6 variantMuts,428 variantMuts,1137 variantNucMuts_BQ_1,2 variantNucMuts_BQ_1,7 bra strainCons119way,1172 branch PhyloCSF_smooth,170 PhyloCSF_smooth,185 PhyloCSF_smooth,196 PhyloCSF_smooth,209 PhyloCSF_smooth,232 PhyloCSF_smooth,262 PhyloCSFpower,4 PhyloCSFpower,185 PhyloCSFpower,200 PhyloCSFpower,211 PhyloCSFpower,224 PhyloCSFpower,247 PhyloCSFpower,277 nextstrainParsimony,137 nextstrainParsimony,163 recomb,167 strainCons119way,1688 strainCons119way,1884 strainCons44way,1283 strainCons44way,1479 branch-point augustusGene,55 branches nextstrainParsimony,113 nextstrainParsimony,181 nextstrainParsimony,199 nextstrainSamples,583 pond,104 pond,151 recomb,135 recomb,180 sarsCov2Phylo,658 sarsCov2Phylo,1158 sarsCov2PhyloPub,682 sarsCov2PhyloPub,1291 strainCons119way,2019 strainCons44way,1614 branching sarsCov2Phylo,114 sarsCov2PhyloPub,127 braun targets,17 targets,230 bray Q0_tracks,1299 Q1_tracks,1301 Q2_tracks,1301 Q3_tracks,1301 galaxyEna,1301 galaxyEnaQ0Ba-1,1297 galaxyEnaQ0Ba-1-1,1297 galaxyEnaQ0Ba-1-1-11,1297 galaxyEnaQ0Ba-1-17,1297 galaxyEnaQ0Ba-2,1297 galaxyEnaQ1Ay-4,1297 galaxyEnaQ1Ay-4-2,1297 galaxyEnaQ1Ay-4-2-2,1297 galaxyEnaQ1Ay-43,1297 galaxyEnaQ1Ba-1-17,1297 galaxyEnaQ2Ay-120,1297 galaxyEnaQ2Ay-122,1297 galaxyEnaQ2Ay-4,1297 galaxyEnaQ2Ay-5,1297 galaxyEnaQ2Ay-6,1297 galaxyEnaQ3Ay-4,1297 galaxyEnaQ3Ay-5,1297 galaxyEnaQ3Ay-9,1297 galaxyEnaQ3B-1-1-7,1297 galaxyEnaQ3B-1-617-2,1297 brazil variantAaMutsV2_P_1,7 variantMuts,311 variantMuts,1429 variantNucMutsV2_P_1,7 break kimIvtCov,137 breaking nextstrainFreq,114 breakpoints kimMgiLdr3p,7 kimMgiNc3p,10 kimMgiNc5p,10 kimNp,5 kimNp,27 kimNp,58 kimNp5pBreak,7 kimNpLdr3pBreak,7 kimNpNc3pBrk,7 recomb,2 recomb,4 recomb,18 transcriptome,188 transcriptome,210 transcriptome,320 breakpts kimNp,2 breaks recomb,190 transcriptome,228 transcriptome,231 brian multiz7way,889 multiz7way,921 ncbiGeneBGP,172 ncbiProducts,188 rnaStructRangan,99 strainCons119way,2267 strainCons119way,2299 strainCons44way,1862 strainCons44way,1894 unipCov2AliSwissprot,418 unipCov2Chain,648 unipCov2DisulfBond,644 unipCov2Domain,643 unipCov2Interest,301 unipCov2LocCytopl,643 unipCov2LocExtra,643 unipCov2LocSignal,644 unipCov2LocTransMemb,644 unipCov2Modif,647 unipCov2Mut,644 unipCov2Other,644 unipCov2Repeat,642 unipCov2Struct,646 brianna microdel,270 briannachrisman microdel,212 bridge gold,132 bridged gap,100 brief PhyloCSF_smooth,380 PhyloCSFpower,397 addgene,137 briefly rapid,52 brkpts kimIvtCov,131 broad crisprDet,39 crisprDet,88 crisprDet,91 broberg sarsCov2Phylo,974 sarsCov2PhyloPub,1094 bronchitis strainCons119way,1312 brooke vaccines,506 brought contacts,208 brown gold,92 gold,106 browser Calu3_07hpi,317 IgG_Z-score-_COVID-19_patients,75 IgG_Z-score-_COVID-19_patients,293 IgM_Z-score-_COVID-19_patients,75 IgM_Z-score-_COVID-19_patients,293 ORFs,315 PhyloCSF_smooth,636 PhyloCSF_smooth,689 PhyloCSFpower,655 Q0_tracks,257 Q0_tracks,657 Q0_tracks,1048 Q1_tracks,259 Q1_tracks,659 Q1_tracks,1050 Q2_tracks,259 Q2_tracks,659 Q2_tracks,1050 Q3_tracks,259 Q3_tracks,659 Q3_tracks,1050 Starr_Bloom,209 Starr_Bloom_bind,203 Vero6_05hpi,317 Vero6_24hpi,317 abEscape,661 addgene,179 artic,76 articV4,76 articV4_1,89 bloomEscMabAvg,665 bloomEscMax,671 bloomEscSerumAvg,666 bloomEscTop,669 bpmIggCovidSum,84 bpmIggCovidSum,302 bpmIgmCovidSum,84 bpmIgmCovidSum,302 cas13Crispr,361 contacts,289 cpgIslandExt,522 cpgIslandExtUnmasked,525 cpgIslandSuper,522 escape,668 galaxyEna,259 galaxyEna,659 galaxyEna,1050 galaxyEnaQ0Ba-1,255 galaxyEnaQ0Ba-1,655 galaxyEnaQ0Ba-1,1046 galaxyEnaQ0Ba-1-1,255 galaxyEnaQ0Ba-1-1,655 galaxyEnaQ0Ba-1-1,1046 galaxyEnaQ0Ba-1-1-11,255 galaxyEnaQ0Ba-1-1-11,655 galaxyEnaQ0Ba-1-1-11,1046 galaxyEnaQ0Ba-1-17,255 galaxyEnaQ0Ba-1-17,655 galaxyEnaQ0Ba-1-17,1046 galaxyEnaQ0Ba-2,255 galaxyEnaQ0Ba-2,655 galaxyEnaQ0Ba-2,1046 galaxyEnaQ1Ay-4,255 galaxyEnaQ1Ay-4,655 galaxyEnaQ1Ay-4,1046 galaxyEnaQ1Ay-4-2,255 galaxyEnaQ1Ay-4-2,655 galaxyEnaQ1Ay-4-2,1046 galaxyEnaQ1Ay-4-2-2,255 galaxyEnaQ1Ay-4-2-2,655 galaxyEnaQ1Ay-4-2-2,1046 galaxyEnaQ1Ay-43,255 galaxyEnaQ1Ay-43,655 galaxyEnaQ1Ay-43,1046 galaxyEnaQ1Ba-1-17,255 galaxyEnaQ1Ba-1-17,655 galaxyEnaQ1Ba-1-17,1046 galaxyEnaQ2Ay-120,255 galaxyEnaQ2Ay-120,655 galaxyEnaQ2Ay-120,1046 galaxyEnaQ2Ay-122,255 galaxyEnaQ2Ay-122,655 galaxyEnaQ2Ay-122,1046 galaxyEnaQ2Ay-4,255 galaxyEnaQ2Ay-4,655 galaxyEnaQ2Ay-4,1046 galaxyEnaQ2Ay-5,255 galaxyEnaQ2Ay-5,655 galaxyEnaQ2Ay-5,1046 galaxyEnaQ2Ay-6,255 galaxyEnaQ2Ay-6,655 galaxyEnaQ2Ay-6,1046 galaxyEnaQ3Ay-4,255 galaxyEnaQ3Ay-4,655 galaxyEnaQ3Ay-4,1046 galaxyEnaQ3Ay-5,255 galaxyEnaQ3Ay-5,655 galaxyEnaQ3Ay-5,1046 galaxyEnaQ3Ay-9,255 galaxyEnaQ3Ay-9,655 galaxyEnaQ3Ay-9,1046 galaxyEnaQ3B-1-1-7,255 galaxyEnaQ3B-1-1-7,655 galaxyEnaQ3B-1-1-7,1046 galaxyEnaQ3B-1-617-2,255 galaxyEnaQ3B-1-617-2,655 galaxyEnaQ3B-1-617-2,1046 icshape,106 kimRnaMod,123 kimTranscripts,340 mccoy,661 microdel,121 microdel,149 ncbiGeneBGP,51 ncbiProducts,67 nextstrainClade,202 nextstrainFreq,195 nextstrainGene,69 nextstrainGene,152 nextstrainParsimony,364 pbm,84 pbm,302 pbmShanghai,352 pbmShanghai,419 phyloGenes,337 poranHla1,150 poranHla2,150 primers,339 problematicSites,481 problematicSites,522 rapid,230 rappuoli,668 recomb,296 resist,95 resistPred,183 resistPred,187 sarsCov2Phylo,95 sarsCov2Phylo,594 sarsCov2Phylo,727 sarsCov2PhyloPub,108 sarsCov2PhyloPub,621 sarsCov2PhyloPub,789 sarsCov2PhyloPub,877 spikeMuts,237 spikeMuts,243 spikeMuts,254 spikeMuts,305 strainCons119way,2178 strainCons44way,1773 strainCons44way,2258 swift,159 transcriptome,346 ucscToINSDC,19 ucscToRefSeq,14 unipCov2AliSwissprot,238 unipCov2AliSwissprot,244 unipCov2AliSwissprot,272 unipCov2Chain,474 unipCov2Chain,502 unipCov2DisulfBond,470 unipCov2DisulfBond,498 unipCov2Domain,469 unipCov2Domain,497 unipCov2Interest,150 unipCov2Interest,178 unipCov2LocCytopl,469 unipCov2LocCytopl,497 unipCov2LocExtra,469 unipCov2LocExtra,497 unipCov2LocSignal,470 unipCov2LocSignal,498 unipCov2LocTransMemb,470 unipCov2LocTransMemb,498 unipCov2Modif,473 unipCov2Modif,501 unipCov2Mut,470 unipCov2Mut,498 unipCov2Other,470 unipCov2Other,498 unipCov2Repeat,468 unipCov2Repeat,496 unipCov2Struct,472 unipCov2Struct,500 vaccines,234 vaccines,391 variantMuts,998 varskip,82 weizmanOrfs,323 bruford PhyloCSFpower,724 bryan recomb,315 bsa pbmShanghai,92 btcov strainCons44way,1039 btky72 strainCons44way,1141 btkynl63-9a strainCons119way,1442 btrl-betacov strainCons44way,1106 btrs-betacov strainCons44way,1045 strainCons44way,1067 strainCons44way,1077 strainCons44way,1109 buchholz vaccines,576 build spikeMuts,173 unipCov2AliSwissprot,252 unipCov2Chain,482 unipCov2DisulfBond,478 unipCov2Domain,477 unipCov2Interest,158 unipCov2LocCytopl,477 unipCov2LocExtra,477 unipCov2LocSignal,478 unipCov2LocTransMemb,478 unipCov2Modif,481 unipCov2Mut,478 unipCov2Other,478 unipCov2Repeat,476 unipCov2Struct,480 built augustusGene,51 augustusGene,67 nextstrainSamples,463 burge genscan,22 genscan,146 genscan,166 genscan,173 genscan,180 genscan,207 burhans multiz7way,895 strainCons119way,2273 strainCons44way,1868 business Q0_tracks,1272 Q1_tracks,1274 Q2_tracks,1274 Q3_tracks,1274 galaxyEna,1274 galaxyEnaQ0Ba-1,1270 galaxyEnaQ0Ba-1-1,1270 galaxyEnaQ0Ba-1-1-11,1270 galaxyEnaQ0Ba-1-17,1270 galaxyEnaQ0Ba-2,1270 galaxyEnaQ1Ay-4,1270 galaxyEnaQ1Ay-4-2,1270 galaxyEnaQ1Ay-4-2-2,1270 galaxyEnaQ1Ay-43,1270 galaxyEnaQ1Ba-1-17,1270 galaxyEnaQ2Ay-120,1270 galaxyEnaQ2Ay-122,1270 galaxyEnaQ2Ay-4,1270 galaxyEnaQ2Ay-5,1270 galaxyEnaQ2Ay-6,1270 galaxyEnaQ3Ay-4,1270 galaxyEnaQ3Ay-5,1270 galaxyEnaQ3Ay-9,1270 galaxyEnaQ3B-1-1-7,1270 galaxyEnaQ3B-1-617-2,1270 but Calu3_07hpi,47 IgG_Z-score-_COVID-19_patients,113 IgM_Z-score-_COVID-19_patients,113 ORFs,45 PhyloCSF_smooth,268 PhyloCSF_smooth,309 PhyloCSF_smooth,502 PhyloCSFpower,283 PhyloCSFpower,324 PhyloCSFpower,517 Vero6_05hpi,47 Vero6_24hpi,47 abEscape,352 bloomEscMabAvg,356 bloomEscMax,362 bloomEscSerumAvg,357 bloomEscTop,360 bpmIggCovidSum,122 bpmIgmCovidSum,122 contacts,181 contacts,222 escape,359 kimIvtCov,48 kimIvtCov,72 mccoy,352 nextstrainGene,48 nextstrainSamples,63 pbm,122 pbmShanghai,179 pond,125 primers,161 problematicSites,381 rappuoli,359 sarsCov2Phylo,57 sarsCov2Phylo,435 sarsCov2PhyloPub,71 sarsCov2PhyloPub,464 strainCons119way,203 strainCons44way,151 targets,63 transcriptome,151 variantMuts,217 weizmanOrfs,53 button multiz7way,317 sarsCov2Phylo,551 sarsCov2PhyloPub,576 buttons multiz7way,266 strainCons119way,615 strainCons44way,563 bv-brc resist,11 resist,147 resistPred,239 variantMuts,205 bw icshape,92 by Calu3_07hpi,140 Calu3_07hpi,209 Calu3_07hpi,227 IgG_Z-score-_COVID-19_patients,333 IgM_Z-score-_COVID-19_patients,333 ORFs,138 ORFs,207 ORFs,225 PhyloCSF_smooth,14 PhyloCSF_smooth,762 PhyloCSFpower,29 PhyloCSFpower,741 Q0_tracks,62 Q0_tracks,238 Q0_tracks,521 Q0_tracks,680 Q0_tracks,729 Q0_tracks,889 Q0_tracks,927 Q0_tracks,961 Q0_tracks,1052 Q0_tracks,1144 Q0_tracks,1185 Q0_tracks,1200 Q1_tracks,64 Q1_tracks,240 Q1_tracks,523 Q1_tracks,682 Q1_tracks,731 Q1_tracks,891 Q1_tracks,929 Q1_tracks,963 Q1_tracks,1054 Q1_tracks,1146 Q1_tracks,1187 Q1_tracks,1202 Q2_tracks,64 Q2_tracks,240 Q2_tracks,523 Q2_tracks,682 Q2_tracks,731 Q2_tracks,891 Q2_tracks,929 Q2_tracks,963 Q2_tracks,1054 Q2_tracks,1146 Q2_tracks,1187 Q2_tracks,1202 Q3_tracks,64 Q3_tracks,240 Q3_tracks,523 Q3_tracks,682 Q3_tracks,731 Q3_tracks,891 Q3_tracks,929 Q3_tracks,963 Q3_tracks,1054 Q3_tracks,1146 Q3_tracks,1187 Q3_tracks,1202 Starr_Bloom,150 Starr_Bloom_bind,144 Vero6_05hpi,140 Vero6_05hpi,209 Vero6_05hpi,227 Vero6_24hpi,140 Vero6_24hpi,209 Vero6_24hpi,227 abEscape,196 abEscape,422 abEscape,716 addgene,264 artic,116 articV4,116 articV4_1,129 augustusGene,147 augustusGene,266 augustusGene,282 bloomEscMabAvg,200 bloomEscMabAvg,426 bloomEscMabAvg,720 bloomEscMax,206 bloomEscMax,432 bloomEscMax,726 bloomEscSerumAvg,201 bloomEscSerumAvg,427 bloomEscSerumAvg,721 bloomEscTop,204 bloomEscTop,430 bloomEscTop,724 bpmIggCovidSum,342 bpmIgmCovidSum,342 cas13Crispr,128 cas13Crispr,156 cas13Crispr,185 cas13Crispr,225 cas13Crispr,235 cas13Crispr,401 cas13Crispr,476 cd8escape,29 cd8escape,34 cd8escape,56 cd8escape,78 contacts,33 contacts,65 contacts,192 contacts,211 contacts,226 contacts,276 contacts,329 contacts,399 contacts,404 cpgIslandExt,49 cpgIslandExt,194 cpgIslandExt,229 cpgIslandExt,406 cpgIslandExt,596 cpgIslandExtUnmasked,52 cpgIslandExtUnmasked,197 cpgIslandExtUnmasked,232 cpgIslandExtUnmasked,409 cpgIslandExtUnmasked,599 cpgIslandSuper,49 cpgIslandSuper,194 cpgIslandSuper,229 cpgIslandSuper,406 cpgIslandSuper,596 crisprDet,32 crisprDet,123 epitopes,305 escape,203 escape,429 escape,723 galaxyEna,64 galaxyEna,240 galaxyEna,523 galaxyEna,682 galaxyEna,731 galaxyEna,891 galaxyEna,929 galaxyEna,963 galaxyEna,1054 galaxyEna,1146 galaxyEna,1187 galaxyEna,1202 galaxyEnaQ0Ba-1,60 galaxyEnaQ0Ba-1,236 galaxyEnaQ0Ba-1,519 galaxyEnaQ0Ba-1,678 galaxyEnaQ0Ba-1,727 galaxyEnaQ0Ba-1,887 galaxyEnaQ0Ba-1,925 galaxyEnaQ0Ba-1,959 galaxyEnaQ0Ba-1,1050 galaxyEnaQ0Ba-1,1142 galaxyEnaQ0Ba-1,1183 galaxyEnaQ0Ba-1,1198 galaxyEnaQ0Ba-1-1,60 galaxyEnaQ0Ba-1-1,236 galaxyEnaQ0Ba-1-1,519 galaxyEnaQ0Ba-1-1,678 galaxyEnaQ0Ba-1-1,727 galaxyEnaQ0Ba-1-1,887 galaxyEnaQ0Ba-1-1,925 galaxyEnaQ0Ba-1-1,959 galaxyEnaQ0Ba-1-1,1050 galaxyEnaQ0Ba-1-1,1142 galaxyEnaQ0Ba-1-1,1183 galaxyEnaQ0Ba-1-1,1198 galaxyEnaQ0Ba-1-1-11,60 galaxyEnaQ0Ba-1-1-11,236 galaxyEnaQ0Ba-1-1-11,519 galaxyEnaQ0Ba-1-1-11,678 galaxyEnaQ0Ba-1-1-11,727 galaxyEnaQ0Ba-1-1-11,887 galaxyEnaQ0Ba-1-1-11,925 galaxyEnaQ0Ba-1-1-11,959 galaxyEnaQ0Ba-1-1-11,1050 galaxyEnaQ0Ba-1-1-11,1142 galaxyEnaQ0Ba-1-1-11,1183 galaxyEnaQ0Ba-1-1-11,1198 galaxyEnaQ0Ba-1-17,60 galaxyEnaQ0Ba-1-17,236 galaxyEnaQ0Ba-1-17,519 galaxyEnaQ0Ba-1-17,678 galaxyEnaQ0Ba-1-17,727 galaxyEnaQ0Ba-1-17,887 galaxyEnaQ0Ba-1-17,925 galaxyEnaQ0Ba-1-17,959 galaxyEnaQ0Ba-1-17,1050 galaxyEnaQ0Ba-1-17,1142 galaxyEnaQ0Ba-1-17,1183 galaxyEnaQ0Ba-1-17,1198 galaxyEnaQ0Ba-2,60 galaxyEnaQ0Ba-2,236 galaxyEnaQ0Ba-2,519 galaxyEnaQ0Ba-2,678 galaxyEnaQ0Ba-2,727 galaxyEnaQ0Ba-2,887 galaxyEnaQ0Ba-2,925 galaxyEnaQ0Ba-2,959 galaxyEnaQ0Ba-2,1050 galaxyEnaQ0Ba-2,1142 galaxyEnaQ0Ba-2,1183 galaxyEnaQ0Ba-2,1198 galaxyEnaQ1Ay-4,60 galaxyEnaQ1Ay-4,236 galaxyEnaQ1Ay-4,519 galaxyEnaQ1Ay-4,678 galaxyEnaQ1Ay-4,727 galaxyEnaQ1Ay-4,887 galaxyEnaQ1Ay-4,925 galaxyEnaQ1Ay-4,959 galaxyEnaQ1Ay-4,1050 galaxyEnaQ1Ay-4,1142 galaxyEnaQ1Ay-4,1183 galaxyEnaQ1Ay-4,1198 galaxyEnaQ1Ay-4-2,60 galaxyEnaQ1Ay-4-2,236 galaxyEnaQ1Ay-4-2,519 galaxyEnaQ1Ay-4-2,678 galaxyEnaQ1Ay-4-2,727 galaxyEnaQ1Ay-4-2,887 galaxyEnaQ1Ay-4-2,925 galaxyEnaQ1Ay-4-2,959 galaxyEnaQ1Ay-4-2,1050 galaxyEnaQ1Ay-4-2,1142 galaxyEnaQ1Ay-4-2,1183 galaxyEnaQ1Ay-4-2,1198 galaxyEnaQ1Ay-4-2-2,60 galaxyEnaQ1Ay-4-2-2,236 galaxyEnaQ1Ay-4-2-2,519 galaxyEnaQ1Ay-4-2-2,678 galaxyEnaQ1Ay-4-2-2,727 galaxyEnaQ1Ay-4-2-2,887 galaxyEnaQ1Ay-4-2-2,925 galaxyEnaQ1Ay-4-2-2,959 galaxyEnaQ1Ay-4-2-2,1050 galaxyEnaQ1Ay-4-2-2,1142 galaxyEnaQ1Ay-4-2-2,1183 galaxyEnaQ1Ay-4-2-2,1198 galaxyEnaQ1Ay-43,60 galaxyEnaQ1Ay-43,236 galaxyEnaQ1Ay-43,519 galaxyEnaQ1Ay-43,678 galaxyEnaQ1Ay-43,727 galaxyEnaQ1Ay-43,887 galaxyEnaQ1Ay-43,925 galaxyEnaQ1Ay-43,959 galaxyEnaQ1Ay-43,1050 galaxyEnaQ1Ay-43,1142 galaxyEnaQ1Ay-43,1183 galaxyEnaQ1Ay-43,1198 galaxyEnaQ1Ba-1-17,60 galaxyEnaQ1Ba-1-17,236 galaxyEnaQ1Ba-1-17,519 galaxyEnaQ1Ba-1-17,678 galaxyEnaQ1Ba-1-17,727 galaxyEnaQ1Ba-1-17,887 galaxyEnaQ1Ba-1-17,925 galaxyEnaQ1Ba-1-17,959 galaxyEnaQ1Ba-1-17,1050 galaxyEnaQ1Ba-1-17,1142 galaxyEnaQ1Ba-1-17,1183 galaxyEnaQ1Ba-1-17,1198 galaxyEnaQ2Ay-120,60 galaxyEnaQ2Ay-120,236 galaxyEnaQ2Ay-120,519 galaxyEnaQ2Ay-120,678 galaxyEnaQ2Ay-120,727 galaxyEnaQ2Ay-120,887 galaxyEnaQ2Ay-120,925 galaxyEnaQ2Ay-120,959 galaxyEnaQ2Ay-120,1050 galaxyEnaQ2Ay-120,1142 galaxyEnaQ2Ay-120,1183 galaxyEnaQ2Ay-120,1198 galaxyEnaQ2Ay-122,60 galaxyEnaQ2Ay-122,236 galaxyEnaQ2Ay-122,519 galaxyEnaQ2Ay-122,678 galaxyEnaQ2Ay-122,727 galaxyEnaQ2Ay-122,887 galaxyEnaQ2Ay-122,925 galaxyEnaQ2Ay-122,959 galaxyEnaQ2Ay-122,1050 galaxyEnaQ2Ay-122,1142 galaxyEnaQ2Ay-122,1183 galaxyEnaQ2Ay-122,1198 galaxyEnaQ2Ay-4,60 galaxyEnaQ2Ay-4,236 galaxyEnaQ2Ay-4,519 galaxyEnaQ2Ay-4,678 galaxyEnaQ2Ay-4,727 galaxyEnaQ2Ay-4,887 galaxyEnaQ2Ay-4,925 galaxyEnaQ2Ay-4,959 galaxyEnaQ2Ay-4,1050 galaxyEnaQ2Ay-4,1142 galaxyEnaQ2Ay-4,1183 galaxyEnaQ2Ay-4,1198 galaxyEnaQ2Ay-5,60 galaxyEnaQ2Ay-5,236 galaxyEnaQ2Ay-5,519 galaxyEnaQ2Ay-5,678 galaxyEnaQ2Ay-5,727 galaxyEnaQ2Ay-5,887 galaxyEnaQ2Ay-5,925 galaxyEnaQ2Ay-5,959 galaxyEnaQ2Ay-5,1050 galaxyEnaQ2Ay-5,1142 galaxyEnaQ2Ay-5,1183 galaxyEnaQ2Ay-5,1198 galaxyEnaQ2Ay-6,60 galaxyEnaQ2Ay-6,236 galaxyEnaQ2Ay-6,519 galaxyEnaQ2Ay-6,678 galaxyEnaQ2Ay-6,727 galaxyEnaQ2Ay-6,887 galaxyEnaQ2Ay-6,925 galaxyEnaQ2Ay-6,959 galaxyEnaQ2Ay-6,1050 galaxyEnaQ2Ay-6,1142 galaxyEnaQ2Ay-6,1183 galaxyEnaQ2Ay-6,1198 galaxyEnaQ3Ay-4,60 galaxyEnaQ3Ay-4,236 galaxyEnaQ3Ay-4,519 galaxyEnaQ3Ay-4,678 galaxyEnaQ3Ay-4,727 galaxyEnaQ3Ay-4,887 galaxyEnaQ3Ay-4,925 galaxyEnaQ3Ay-4,959 galaxyEnaQ3Ay-4,1050 galaxyEnaQ3Ay-4,1142 galaxyEnaQ3Ay-4,1183 galaxyEnaQ3Ay-4,1198 galaxyEnaQ3Ay-5,60 galaxyEnaQ3Ay-5,236 galaxyEnaQ3Ay-5,519 galaxyEnaQ3Ay-5,678 galaxyEnaQ3Ay-5,727 galaxyEnaQ3Ay-5,887 galaxyEnaQ3Ay-5,925 galaxyEnaQ3Ay-5,959 galaxyEnaQ3Ay-5,1050 galaxyEnaQ3Ay-5,1142 galaxyEnaQ3Ay-5,1183 galaxyEnaQ3Ay-5,1198 galaxyEnaQ3Ay-9,60 galaxyEnaQ3Ay-9,236 galaxyEnaQ3Ay-9,519 galaxyEnaQ3Ay-9,678 galaxyEnaQ3Ay-9,727 galaxyEnaQ3Ay-9,887 galaxyEnaQ3Ay-9,925 galaxyEnaQ3Ay-9,959 galaxyEnaQ3Ay-9,1050 galaxyEnaQ3Ay-9,1142 galaxyEnaQ3Ay-9,1183 galaxyEnaQ3Ay-9,1198 galaxyEnaQ3B-1-1-7,60 galaxyEnaQ3B-1-1-7,236 galaxyEnaQ3B-1-1-7,519 galaxyEnaQ3B-1-1-7,678 galaxyEnaQ3B-1-1-7,727 galaxyEnaQ3B-1-1-7,887 galaxyEnaQ3B-1-1-7,925 galaxyEnaQ3B-1-1-7,959 galaxyEnaQ3B-1-1-7,1050 galaxyEnaQ3B-1-1-7,1142 galaxyEnaQ3B-1-1-7,1183 galaxyEnaQ3B-1-1-7,1198 galaxyEnaQ3B-1-617-2,60 galaxyEnaQ3B-1-617-2,236 galaxyEnaQ3B-1-617-2,519 galaxyEnaQ3B-1-617-2,678 galaxyEnaQ3B-1-617-2,727 galaxyEnaQ3B-1-617-2,887 galaxyEnaQ3B-1-617-2,925 galaxyEnaQ3B-1-617-2,959 galaxyEnaQ3B-1-617-2,1050 galaxyEnaQ3B-1-617-2,1142 galaxyEnaQ3B-1-617-2,1183 galaxyEnaQ3B-1-617-2,1198 gap,93 gc5BaseBw,81 genscan,20 genscan,88 genscan,121 gold,85 gordon2,48 gordon2,130 gordon2,233 gordon2,245 icshape,31 iedb,17 iedb,25 kimIvtCov,54 kimIvtCov,124 kimIvtCov,140 kimIvtCov,143 kimNp,30 kimNp,37 kimNp,81 kimRnaMod,36 kimRnaMod,163 kimTranscripts,9 kimTranscripts,51 kimTranscripts,110 kimTranscripts,141 kimTranscripts,168 kimTranscripts,179 kimTranscripts,209 kimTranscripts,257 kimTranscripts,268 kimTranscripts,380 mccoy,10 mccoy,196 mccoy,422 mccoy,716 multiz7way,407 multiz7way,686 multiz7way,829 multiz7way,857 multiz7way,879 multiz7way,888 multiz7way,893 multiz7way,899 multiz7way,907 ncbiGeneBGP,83 ncbiGeneBGP,168 ncbiProducts,99 ncbiProducts,184 nextstrainClade,60 nextstrainClade,130 nextstrainClade,157 nextstrainClade,229 nextstrainFreq,90 nextstrainFreq,142 nextstrainFreq,149 nextstrainFreq,362 nextstrainGene,5 nextstrainGene,100 nextstrainGene,107 nextstrainGene,178 nextstrainParsimony,256 nextstrainParsimony,299 nextstrainParsimony,306 nextstrainParsimony,410 nextstrainParsimony,417 nextstrainParsimony,441 nextstrainSamples,97 nextstrainSamples,235 nextstrainSamples,455 nextstrainSamples,464 nextstrainSamples,590 nextstrainSamples,610 nextstrainSamples,637 nextstrainSamples,666 nextstrainSamples,748 nextstrainSamples,887 nextstrainSamples,894 nextstrainSamples,918 pbm,342 pbmShanghai,235 pbmShanghai,459 phyloGenes,377 phyloGenes,601 pond,185 poranHla1,50 poranHla1,190 poranHla2,50 poranHla2,190 primers,36 primers,87 primers,267 primers,362 primers,373 primers,379 primers,384 problematicSites,37 problematicSites,372 problematicSites,434 rapid,270 rappuoli,203 rappuoli,429 rappuoli,723 recomb,20 recomb,34 recomb,48 recomb,59 recomb,176 resist,61 resistPred,78 rfam,110 rfam,151 rnaStructRangan,55 rnaStructRangan,84 rosettaMhc,6 rosettaMhc,100 rosettaMhc,180 rosettaMhc,285 sarsCov2Phylo,32 sarsCov2Phylo,40 sarsCov2Phylo,76 sarsCov2Phylo,129 sarsCov2Phylo,204 sarsCov2Phylo,232 sarsCov2Phylo,546 sarsCov2Phylo,559 sarsCov2Phylo,591 sarsCov2Phylo,618 sarsCov2Phylo,743 sarsCov2Phylo,823 sarsCov2Phylo,830 sarsCov2Phylo,846 sarsCov2Phylo,852 sarsCov2PhyloPub,43 sarsCov2PhyloPub,54 sarsCov2PhyloPub,90 sarsCov2PhyloPub,140 sarsCov2PhyloPub,211 sarsCov2PhyloPub,239 sarsCov2PhyloPub,378 sarsCov2PhyloPub,571 sarsCov2PhyloPub,584 sarsCov2PhyloPub,618 sarsCov2PhyloPub,645 sarsCov2PhyloPub,786 sarsCov2PhyloPub,906 sarsCov2PhyloPub,913 simpleRepeat,6 simpleRepeat,22 simpleRepeat,70 spikeMuts,110 spikeMuts,192 strainCons119way,155 strainCons119way,208 strainCons119way,374 strainCons119way,749 strainCons119way,1035 strainCons119way,1871 strainCons119way,2041 strainCons119way,2071 strainCons119way,2093 strainCons119way,2207 strainCons119way,2235 strainCons119way,2257 strainCons119way,2266 strainCons119way,2271 strainCons119way,2277 strainCons119way,2285 strainCons44way,103 strainCons44way,156 strainCons44way,322 strainCons44way,697 strainCons44way,983 strainCons44way,1466 strainCons44way,1636 strainCons44way,1666 strainCons44way,1688 strainCons44way,1802 strainCons44way,1830 strainCons44way,1852 strainCons44way,1861 strainCons44way,1866 strainCons44way,1872 strainCons44way,1880 strainCons44way,2261 strainPhastCons119way,7 strainPhastCons44way,9 strainPhyloP119way,7 strainPhyloP44way,9 swift,199 targets,216 transcriptome,43 transcriptome,102 transcriptome,148 transcriptome,172 transcriptome,386 treangen,154 ucscToINSDC,50 ucscToRefSeq,44 unipCov2AliSwissprot,67 unipCov2AliSwissprot,215 unipCov2AliSwissprot,226 unipCov2AliSwissprot,315 unipCov2AliSwissprot,405 unipCov2Chain,37 unipCov2Chain,109 unipCov2Chain,468 unipCov2Chain,545 unipCov2Chain,635 unipCov2DisulfBond,33 unipCov2DisulfBond,105 unipCov2DisulfBond,464 unipCov2DisulfBond,541 unipCov2DisulfBond,631 unipCov2Domain,32 unipCov2Domain,104 unipCov2Domain,463 unipCov2Domain,540 unipCov2Domain,630 unipCov2Interest,39 unipCov2Interest,144 unipCov2Interest,221 unipCov2Interest,288 unipCov2LocCytopl,32 unipCov2LocCytopl,104 unipCov2LocCytopl,463 unipCov2LocCytopl,540 unipCov2LocCytopl,630 unipCov2LocExtra,32 unipCov2LocExtra,104 unipCov2LocExtra,463 unipCov2LocExtra,540 unipCov2LocExtra,630 unipCov2LocSignal,33 unipCov2LocSignal,105 unipCov2LocSignal,464 unipCov2LocSignal,541 unipCov2LocSignal,631 unipCov2LocTransMemb,33 unipCov2LocTransMemb,105 unipCov2LocTransMemb,464 unipCov2LocTransMemb,541 unipCov2LocTransMemb,631 unipCov2Modif,36 unipCov2Modif,108 unipCov2Modif,467 unipCov2Modif,544 unipCov2Modif,634 unipCov2Mut,33 unipCov2Mut,105 unipCov2Mut,464 unipCov2Mut,541 unipCov2Mut,631 unipCov2Other,33 unipCov2Other,105 unipCov2Other,464 unipCov2Other,541 unipCov2Other,631 unipCov2Repeat,31 unipCov2Repeat,103 unipCov2Repeat,462 unipCov2Repeat,539 unipCov2Repeat,629 unipCov2Struct,35 unipCov2Struct,107 unipCov2Struct,466 unipCov2Struct,543 unipCov2Struct,633 vaccines,34 vaccines,47 vaccines,63 vaccines,89 vaccines,165 vaccines,440 vaccines,582 vaccines,641 variantMuts,41 variantMuts,236 variantMuts,963 variantMuts,1169 variantMuts,1176 variantMuts,1232 variantMuts,1313 varskip,122 weizmanOrfs,10 weizmanOrfs,146 weizmanOrfs,215 weizmanOrfs,233 windowmaskerSdust,6 windowmaskerSdust,20 c C_104Max,2 C_104Total,2 C_104Total,11 C_32Max,2 C_32Total,2 C_32Total,11 PhyloCSF_smooth,745 PhyloCSFpower,711 cpgIslandExt,44 cpgIslandExt,389 cpgIslandExtUnmasked,47 cpgIslandExtUnmasked,392 cpgIslandSuper,44 cpgIslandSuper,389 gc5BaseBw,23 genscan,181 genscan,208 multiz7way,607 multiz7way,615 multiz7way,1172 nextstrainClade,245 nextstrainClade,253 nextstrainFreq,380 nextstrainFreq,388 nextstrainGene,194 nextstrainGene,202 nextstrainParsimony,447 nextstrainParsimony,455 nextstrainSamples,1000 nextstrainSamples,1008 phyloGenes,551 problematicSites,542 problematicSites,568 pyle,286 recomb,333 sarsCov2Phylo,946 sarsCov2Phylo,1053 sarsCov2Phylo,1079 sarsCov2PhyloPub,1066 sarsCov2PhyloPub,1173 sarsCov2PhyloPub,1199 strainCons119way,957 strainCons119way,965 strainCons119way,2550 strainCons44way,905 strainCons44way,913 strainCons44way,2145 treangen,241 variantMuts,1253 windowmaskerSdust,30 c-terminal targets,127 c.37 variantAaMutsV2_C_37,6 variantMuts,628 variantNucMutsV2_C_37,6 c12 strainCons119way,1381 c_104 C_104Max,10 c_32 C_32Max,10 c_bind_avg C_bind_avg,1 c_expr_avg C_expr_avg_Expression,1 ca6 strainCons119way,1137 caenorhabditis augustusGene,212 calculated contacts,154 cpgIslandExt,369 cpgIslandExtUnmasked,372 cpgIslandSuper,369 epitopes,65 multiz7way,744 pbmShanghai,135 rosettaMhc,215 rosettaMhc,307 strainCons119way,1504 strainCons44way,1174 calculation cpgIslandExt,399 cpgIslandExtUnmasked,402 cpgIslandSuper,399 calculations strainCons119way,1768 strainCons44way,1363 calgary resist,49 calibration abEscape,361 bloomEscMabAvg,365 bloomEscMax,371 bloomEscSerumAvg,366 bloomEscTop,369 escape,368 mccoy,361 rappuoli,368 california spikeMuts,274 variantMuts,1408 call sarsCov2PhyloPub,826 variantMuts,918 called PhyloCSF_smooth,599 Q0_tracks,596 Q1_tracks,598 Q2_tracks,598 Q3_tracks,598 galaxyEna,598 galaxyEnaQ0Ba-1,594 galaxyEnaQ0Ba-1-1,594 galaxyEnaQ0Ba-1-1-11,594 galaxyEnaQ0Ba-1-17,594 galaxyEnaQ0Ba-2,594 galaxyEnaQ1Ay-4,594 galaxyEnaQ1Ay-4-2,594 galaxyEnaQ1Ay-4-2-2,594 galaxyEnaQ1Ay-43,594 galaxyEnaQ1Ba-1-17,594 galaxyEnaQ2Ay-120,594 galaxyEnaQ2Ay-122,594 galaxyEnaQ2Ay-4,594 galaxyEnaQ2Ay-5,594 galaxyEnaQ2Ay-6,594 galaxyEnaQ3Ay-4,594 galaxyEnaQ3Ay-5,594 galaxyEnaQ3Ay-9,594 galaxyEnaQ3B-1-1-7,594 galaxyEnaQ3B-1-617-2,594 nextstrainSamples,96 variantMuts,1115 callender nextstrainClade,252 nextstrainFreq,387 nextstrainGene,201 nextstrainParsimony,454 nextstrainSamples,1007 calling Q0_tracks,140 Q0_tracks,205 Q0_tracks,465 Q0_tracks,866 Q1_tracks,142 Q1_tracks,207 Q1_tracks,467 Q1_tracks,868 Q2_tracks,142 Q2_tracks,207 Q2_tracks,467 Q2_tracks,868 Q3_tracks,142 Q3_tracks,207 Q3_tracks,467 Q3_tracks,868 galaxyEna,142 galaxyEna,207 galaxyEna,467 galaxyEna,868 galaxyEnaQ0Ba-1,138 galaxyEnaQ0Ba-1,203 galaxyEnaQ0Ba-1,463 galaxyEnaQ0Ba-1,864 galaxyEnaQ0Ba-1-1,138 galaxyEnaQ0Ba-1-1,203 galaxyEnaQ0Ba-1-1,463 galaxyEnaQ0Ba-1-1,864 galaxyEnaQ0Ba-1-1-11,138 galaxyEnaQ0Ba-1-1-11,203 galaxyEnaQ0Ba-1-1-11,463 galaxyEnaQ0Ba-1-1-11,864 galaxyEnaQ0Ba-1-17,138 galaxyEnaQ0Ba-1-17,203 galaxyEnaQ0Ba-1-17,463 galaxyEnaQ0Ba-1-17,864 galaxyEnaQ0Ba-2,138 galaxyEnaQ0Ba-2,203 galaxyEnaQ0Ba-2,463 galaxyEnaQ0Ba-2,864 galaxyEnaQ1Ay-4,138 galaxyEnaQ1Ay-4,203 galaxyEnaQ1Ay-4,463 galaxyEnaQ1Ay-4,864 galaxyEnaQ1Ay-4-2,138 galaxyEnaQ1Ay-4-2,203 galaxyEnaQ1Ay-4-2,463 galaxyEnaQ1Ay-4-2,864 galaxyEnaQ1Ay-4-2-2,138 galaxyEnaQ1Ay-4-2-2,203 galaxyEnaQ1Ay-4-2-2,463 galaxyEnaQ1Ay-4-2-2,864 galaxyEnaQ1Ay-43,138 galaxyEnaQ1Ay-43,203 galaxyEnaQ1Ay-43,463 galaxyEnaQ1Ay-43,864 galaxyEnaQ1Ba-1-17,138 galaxyEnaQ1Ba-1-17,203 galaxyEnaQ1Ba-1-17,463 galaxyEnaQ1Ba-1-17,864 galaxyEnaQ2Ay-120,138 galaxyEnaQ2Ay-120,203 galaxyEnaQ2Ay-120,463 galaxyEnaQ2Ay-120,864 galaxyEnaQ2Ay-122,138 galaxyEnaQ2Ay-122,203 galaxyEnaQ2Ay-122,463 galaxyEnaQ2Ay-122,864 galaxyEnaQ2Ay-4,138 galaxyEnaQ2Ay-4,203 galaxyEnaQ2Ay-4,463 galaxyEnaQ2Ay-4,864 galaxyEnaQ2Ay-5,138 galaxyEnaQ2Ay-5,203 galaxyEnaQ2Ay-5,463 galaxyEnaQ2Ay-5,864 galaxyEnaQ2Ay-6,138 galaxyEnaQ2Ay-6,203 galaxyEnaQ2Ay-6,463 galaxyEnaQ2Ay-6,864 galaxyEnaQ3Ay-4,138 galaxyEnaQ3Ay-4,203 galaxyEnaQ3Ay-4,463 galaxyEnaQ3Ay-4,864 galaxyEnaQ3Ay-5,138 galaxyEnaQ3Ay-5,203 galaxyEnaQ3Ay-5,463 galaxyEnaQ3Ay-5,864 galaxyEnaQ3Ay-9,138 galaxyEnaQ3Ay-9,203 galaxyEnaQ3Ay-9,463 galaxyEnaQ3Ay-9,864 galaxyEnaQ3B-1-1-7,138 galaxyEnaQ3B-1-1-7,203 galaxyEnaQ3B-1-1-7,463 galaxyEnaQ3B-1-1-7,864 galaxyEnaQ3B-1-617-2,138 galaxyEnaQ3B-1-617-2,203 galaxyEnaQ3B-1-617-2,463 galaxyEnaQ3B-1-617-2,864 calls microdel,36 calu3 CHX_7hr_1,1 CHX_7hr_1,5 CHX_7hr_2,1 CHX_7hr_2,5 Calu3_07hpi,1 Calu3_07hpi,3 Calu3_07hpi,109 Calu3_07hpi,256 Harr_7hr_1,1 Harr_7hr_1,5 Harr_7hr_2,1 Harr_7hr_2,5 LTM_7hr_1,1 LTM_7hr_1,5 LTM_7hr_2,1 LTM_7hr_2,5 ORFs,107 ORFs,254 Vero6_05hpi,109 Vero6_05hpi,256 Vero6_24hpi,109 Vero6_24hpi,256 mRNA-seq_7hr_1,1 mRNA-seq_7hr_1,5 mRNA-seq_7hr_2,1 mRNA-seq_7hr_2,5 weizmanOrfs,115 weizmanOrfs,262 camel strainCons119way,1416 can Calu3_07hpi,310 IgG_Z-score-_COVID-19_patients,286 IgG_Z-score-_COVID-19_patients,317 IgG_Z-score-_COVID-19_patients,325 IgG_Z-score-_COVID-19_patients,343 IgG_Z-score-_COVID-19_patients,352 IgM_Z-score-_COVID-19_patients,286 IgM_Z-score-_COVID-19_patients,317 IgM_Z-score-_COVID-19_patients,325 IgM_Z-score-_COVID-19_patients,343 IgM_Z-score-_COVID-19_patients,352 ORFs,308 PhyloCSF_smooth,118 PhyloCSF_smooth,293 PhyloCSF_smooth,507 PhyloCSF_smooth,629 PhyloCSFpower,133 PhyloCSFpower,308 PhyloCSFpower,522 Q0_tracks,142 Q0_tracks,167 Q0_tracks,384 Q0_tracks,643 Q0_tracks,677 Q0_tracks,760 Q0_tracks,965 Q1_tracks,144 Q1_tracks,169 Q1_tracks,386 Q1_tracks,645 Q1_tracks,679 Q1_tracks,762 Q1_tracks,967 Q2_tracks,144 Q2_tracks,169 Q2_tracks,386 Q2_tracks,645 Q2_tracks,679 Q2_tracks,762 Q2_tracks,967 Q3_tracks,144 Q3_tracks,169 Q3_tracks,386 Q3_tracks,645 Q3_tracks,679 Q3_tracks,762 Q3_tracks,967 Starr_Bloom,202 Starr_Bloom_bind,196 Vero6_05hpi,310 Vero6_24hpi,310 abEscape,435 abEscape,654 addgene,22 addgene,117 addgene,251 artic,69 artic,100 artic,108 artic,126 artic,135 articV4,69 articV4,100 articV4,108 articV4,126 articV4,135 articV4_1,80 articV4_1,113 articV4_1,121 articV4_1,139 articV4_1,148 augustusGene,98 bloomEscMabAvg,439 bloomEscMabAvg,658 bloomEscMax,445 bloomEscMax,664 bloomEscSerumAvg,440 bloomEscSerumAvg,659 bloomEscTop,443 bloomEscTop,662 bpmIggCovidSum,295 bpmIggCovidSum,326 bpmIggCovidSum,334 bpmIggCovidSum,352 bpmIggCovidSum,361 bpmIgmCovidSum,295 bpmIgmCovidSum,326 bpmIgmCovidSum,334 bpmIgmCovidSum,352 bpmIgmCovidSum,361 cas13Crispr,354 cas13Crispr,385 cas13Crispr,393 cas13Crispr,411 cas13Crispr,420 contacts,282 contacts,313 contacts,321 contacts,339 contacts,348 cpgIslandExt,512 cpgIslandExt,530 cpgIslandExt,560 cpgIslandExt,571 cpgIslandExtUnmasked,515 cpgIslandExtUnmasked,533 cpgIslandExtUnmasked,563 cpgIslandExtUnmasked,574 cpgIslandSuper,512 cpgIslandSuper,530 cpgIslandSuper,560 cpgIslandSuper,571 escape,442 escape,661 galaxyEna,144 galaxyEna,169 galaxyEna,386 galaxyEna,645 galaxyEna,679 galaxyEna,762 galaxyEna,967 galaxyEnaQ0Ba-1,140 galaxyEnaQ0Ba-1,165 galaxyEnaQ0Ba-1,382 galaxyEnaQ0Ba-1,641 galaxyEnaQ0Ba-1,675 galaxyEnaQ0Ba-1,758 galaxyEnaQ0Ba-1,963 galaxyEnaQ0Ba-1-1,140 galaxyEnaQ0Ba-1-1,165 galaxyEnaQ0Ba-1-1,382 galaxyEnaQ0Ba-1-1,641 galaxyEnaQ0Ba-1-1,675 galaxyEnaQ0Ba-1-1,758 galaxyEnaQ0Ba-1-1,963 galaxyEnaQ0Ba-1-1-11,140 galaxyEnaQ0Ba-1-1-11,165 galaxyEnaQ0Ba-1-1-11,382 galaxyEnaQ0Ba-1-1-11,641 galaxyEnaQ0Ba-1-1-11,675 galaxyEnaQ0Ba-1-1-11,758 galaxyEnaQ0Ba-1-1-11,963 galaxyEnaQ0Ba-1-17,140 galaxyEnaQ0Ba-1-17,165 galaxyEnaQ0Ba-1-17,382 galaxyEnaQ0Ba-1-17,641 galaxyEnaQ0Ba-1-17,675 galaxyEnaQ0Ba-1-17,758 galaxyEnaQ0Ba-1-17,963 galaxyEnaQ0Ba-2,140 galaxyEnaQ0Ba-2,165 galaxyEnaQ0Ba-2,382 galaxyEnaQ0Ba-2,641 galaxyEnaQ0Ba-2,675 galaxyEnaQ0Ba-2,758 galaxyEnaQ0Ba-2,963 galaxyEnaQ1Ay-4,140 galaxyEnaQ1Ay-4,165 galaxyEnaQ1Ay-4,382 galaxyEnaQ1Ay-4,641 galaxyEnaQ1Ay-4,675 galaxyEnaQ1Ay-4,758 galaxyEnaQ1Ay-4,963 galaxyEnaQ1Ay-4-2,140 galaxyEnaQ1Ay-4-2,165 galaxyEnaQ1Ay-4-2,382 galaxyEnaQ1Ay-4-2,641 galaxyEnaQ1Ay-4-2,675 galaxyEnaQ1Ay-4-2,758 galaxyEnaQ1Ay-4-2,963 galaxyEnaQ1Ay-4-2-2,140 galaxyEnaQ1Ay-4-2-2,165 galaxyEnaQ1Ay-4-2-2,382 galaxyEnaQ1Ay-4-2-2,641 galaxyEnaQ1Ay-4-2-2,675 galaxyEnaQ1Ay-4-2-2,758 galaxyEnaQ1Ay-4-2-2,963 galaxyEnaQ1Ay-43,140 galaxyEnaQ1Ay-43,165 galaxyEnaQ1Ay-43,382 galaxyEnaQ1Ay-43,641 galaxyEnaQ1Ay-43,675 galaxyEnaQ1Ay-43,758 galaxyEnaQ1Ay-43,963 galaxyEnaQ1Ba-1-17,140 galaxyEnaQ1Ba-1-17,165 galaxyEnaQ1Ba-1-17,382 galaxyEnaQ1Ba-1-17,641 galaxyEnaQ1Ba-1-17,675 galaxyEnaQ1Ba-1-17,758 galaxyEnaQ1Ba-1-17,963 galaxyEnaQ2Ay-120,140 galaxyEnaQ2Ay-120,165 galaxyEnaQ2Ay-120,382 galaxyEnaQ2Ay-120,641 galaxyEnaQ2Ay-120,675 galaxyEnaQ2Ay-120,758 galaxyEnaQ2Ay-120,963 galaxyEnaQ2Ay-122,140 galaxyEnaQ2Ay-122,165 galaxyEnaQ2Ay-122,382 galaxyEnaQ2Ay-122,641 galaxyEnaQ2Ay-122,675 galaxyEnaQ2Ay-122,758 galaxyEnaQ2Ay-122,963 galaxyEnaQ2Ay-4,140 galaxyEnaQ2Ay-4,165 galaxyEnaQ2Ay-4,382 galaxyEnaQ2Ay-4,641 galaxyEnaQ2Ay-4,675 galaxyEnaQ2Ay-4,758 galaxyEnaQ2Ay-4,963 galaxyEnaQ2Ay-5,140 galaxyEnaQ2Ay-5,165 galaxyEnaQ2Ay-5,382 galaxyEnaQ2Ay-5,641 galaxyEnaQ2Ay-5,675 galaxyEnaQ2Ay-5,758 galaxyEnaQ2Ay-5,963 galaxyEnaQ2Ay-6,140 galaxyEnaQ2Ay-6,165 galaxyEnaQ2Ay-6,382 galaxyEnaQ2Ay-6,641 galaxyEnaQ2Ay-6,675 galaxyEnaQ2Ay-6,758 galaxyEnaQ2Ay-6,963 galaxyEnaQ3Ay-4,140 galaxyEnaQ3Ay-4,165 galaxyEnaQ3Ay-4,382 galaxyEnaQ3Ay-4,641 galaxyEnaQ3Ay-4,675 galaxyEnaQ3Ay-4,758 galaxyEnaQ3Ay-4,963 galaxyEnaQ3Ay-5,140 galaxyEnaQ3Ay-5,165 galaxyEnaQ3Ay-5,382 galaxyEnaQ3Ay-5,641 galaxyEnaQ3Ay-5,675 galaxyEnaQ3Ay-5,758 galaxyEnaQ3Ay-5,963 galaxyEnaQ3Ay-9,140 galaxyEnaQ3Ay-9,165 galaxyEnaQ3Ay-9,382 galaxyEnaQ3Ay-9,641 galaxyEnaQ3Ay-9,675 galaxyEnaQ3Ay-9,758 galaxyEnaQ3Ay-9,963 galaxyEnaQ3B-1-1-7,140 galaxyEnaQ3B-1-1-7,165 galaxyEnaQ3B-1-1-7,382 galaxyEnaQ3B-1-1-7,641 galaxyEnaQ3B-1-1-7,675 galaxyEnaQ3B-1-1-7,758 galaxyEnaQ3B-1-1-7,963 galaxyEnaQ3B-1-617-2,140 galaxyEnaQ3B-1-617-2,165 galaxyEnaQ3B-1-617-2,382 galaxyEnaQ3B-1-617-2,641 galaxyEnaQ3B-1-617-2,675 galaxyEnaQ3B-1-617-2,758 galaxyEnaQ3B-1-617-2,963 icshape,83 icshape,99 icshape,113 icshape,137 kimNp,67 kimNp,88 kimRnaMod,116 kimRnaMod,147 kimRnaMod,155 kimRnaMod,173 kimRnaMod,182 kimTranscripts,333 kimTranscripts,364 kimTranscripts,372 kimTranscripts,390 kimTranscripts,399 mccoy,435 mccoy,654 microdel,142 microdel,206 multiz7way,412 multiz7way,423 ncbiGeneBGP,44 ncbiGeneBGP,69 ncbiGeneBGP,77 ncbiGeneBGP,88 ncbiGeneBGP,111 ncbiGeneBGP,120 ncbiProducts,60 ncbiProducts,85 ncbiProducts,93 ncbiProducts,104 ncbiProducts,127 ncbiProducts,136 nextstrainClade,180 nextstrainClade,195 nextstrainClade,209 nextstrainFreq,172 nextstrainFreq,188 nextstrainFreq,202 nextstrainFreq,226 nextstrainFreq,329 nextstrainGene,130 nextstrainGene,145 nextstrainGene,159 nextstrainParsimony,99 nextstrainParsimony,342 nextstrainParsimony,357 nextstrainParsimony,371 nextstrainSamples,76 nextstrainSamples,552 nextstrainSamples,574 nextstrainSamples,757 pbm,295 pbm,326 pbm,334 pbm,352 pbm,361 pbmShanghai,353 pbmShanghai,412 pbmShanghai,443 pbmShanghai,451 pbmShanghai,469 phyloGenes,330 phyloGenes,361 phyloGenes,369 phyloGenes,387 phyloGenes,396 poranHla1,143 poranHla1,174 poranHla1,182 poranHla1,200 poranHla1,209 poranHla2,143 poranHla2,174 poranHla2,182 poranHla2,200 poranHla2,209 primers,272 primers,317 primers,332 primers,346 problematicSites,33 problematicSites,499 problematicSites,515 problematicSites,529 publicAnnots,74 pyle,269 rapid,111 rapid,223 rapid,254 rapid,262 rapid,280 rapid,289 rappuoli,442 rappuoli,661 recomb,73 recomb,274 recomb,289 recomb,303 resist,88 resist,113 resistPred,165 resistPred,176 resistPred,205 rosettaMhc,44 rosettaMhc,141 sarsCov2Phylo,535 sarsCov2Phylo,543 sarsCov2Phylo,704 sarsCov2Phylo,720 sarsCov2PhyloPub,560 sarsCov2PhyloPub,568 sarsCov2PhyloPub,870 simpleRepeat,35 spikeMuts,231 spikeMuts,298 spikeMuts,315 spikeMuts,330 strainCons119way,306 strainCons119way,1951 strainCons119way,1960 strainCons119way,2168 strainCons44way,254 strainCons44way,1546 strainCons44way,1555 strainCons44way,1763 swift,152 swift,183 swift,191 swift,209 swift,218 transcriptome,189 transcriptome,339 transcriptome,370 transcriptome,378 transcriptome,396 transcriptome,405 treangen,38 unipCov2AliSwissprot,255 unipCov2AliSwissprot,265 unipCov2AliSwissprot,290 unipCov2AliSwissprot,300 unipCov2AliSwissprot,309 unipCov2AliSwissprot,320 unipCov2AliSwissprot,343 unipCov2AliSwissprot,349 unipCov2Chain,485 unipCov2Chain,495 unipCov2Chain,520 unipCov2Chain,530 unipCov2Chain,539 unipCov2Chain,550 unipCov2Chain,573 unipCov2Chain,579 unipCov2DisulfBond,481 unipCov2DisulfBond,491 unipCov2DisulfBond,516 unipCov2DisulfBond,526 unipCov2DisulfBond,535 unipCov2DisulfBond,546 unipCov2DisulfBond,569 unipCov2DisulfBond,575 unipCov2Domain,480 unipCov2Domain,490 unipCov2Domain,515 unipCov2Domain,525 unipCov2Domain,534 unipCov2Domain,545 unipCov2Domain,568 unipCov2Domain,574 unipCov2Interest,161 unipCov2Interest,171 unipCov2Interest,196 unipCov2Interest,206 unipCov2Interest,215 unipCov2Interest,226 unipCov2Interest,249 unipCov2Interest,255 unipCov2LocCytopl,480 unipCov2LocCytopl,490 unipCov2LocCytopl,515 unipCov2LocCytopl,525 unipCov2LocCytopl,534 unipCov2LocCytopl,545 unipCov2LocCytopl,568 unipCov2LocCytopl,574 unipCov2LocExtra,480 unipCov2LocExtra,490 unipCov2LocExtra,515 unipCov2LocExtra,525 unipCov2LocExtra,534 unipCov2LocExtra,545 unipCov2LocExtra,568 unipCov2LocExtra,574 unipCov2LocSignal,481 unipCov2LocSignal,491 unipCov2LocSignal,516 unipCov2LocSignal,526 unipCov2LocSignal,535 unipCov2LocSignal,546 unipCov2LocSignal,569 unipCov2LocSignal,575 unipCov2LocTransMemb,481 unipCov2LocTransMemb,491 unipCov2LocTransMemb,516 unipCov2LocTransMemb,526 unipCov2LocTransMemb,535 unipCov2LocTransMemb,546 unipCov2LocTransMemb,569 unipCov2LocTransMemb,575 unipCov2Modif,484 unipCov2Modif,494 unipCov2Modif,519 unipCov2Modif,529 unipCov2Modif,538 unipCov2Modif,549 unipCov2Modif,572 unipCov2Modif,578 unipCov2Mut,481 unipCov2Mut,491 unipCov2Mut,516 unipCov2Mut,526 unipCov2Mut,535 unipCov2Mut,546 unipCov2Mut,569 unipCov2Mut,575 unipCov2Other,481 unipCov2Other,491 unipCov2Other,516 unipCov2Other,526 unipCov2Other,535 unipCov2Other,546 unipCov2Other,569 unipCov2Other,575 unipCov2Repeat,479 unipCov2Repeat,489 unipCov2Repeat,514 unipCov2Repeat,524 unipCov2Repeat,533 unipCov2Repeat,544 unipCov2Repeat,567 unipCov2Repeat,573 unipCov2Struct,483 unipCov2Struct,493 unipCov2Struct,518 unipCov2Struct,528 unipCov2Struct,537 unipCov2Struct,548 unipCov2Struct,571 unipCov2Struct,577 vaccines,364 vaccines,392 vaccines,410 vaccines,433 variantMuts,975 variantMuts,991 variantMuts,1005 varskip,75 varskip,106 varskip,114 varskip,132 varskip,141 weizmanOrfs,316 candidate cas13Crispr,257 epitopes,70 epitopes,330 candidates cas13Crispr,232 cas13Crispr,279 epitopes,167 phyloGenes,154 cannot contacts,182 pond,182 cano variantMuts,1470 canonical TRS_sites,8 mRNAs,6 transcriptome,2 transcriptome,3 transcriptome,145 transcriptome,165 capacity Calu3_07hpi,88 Calu3_07hpi,370 ORFs,86 ORFs,368 Vero6_05hpi,88 Vero6_05hpi,370 Vero6_24hpi,88 Vero6_24hpi,370 weizmanOrfs,94 weizmanOrfs,376 capture Calu3_07hpi,83 ORFs,81 PhyloCSF_smooth,514 PhyloCSFpower,529 Vero6_05hpi,83 Vero6_24hpi,83 weizmanOrfs,89 captured gordon2,206 carabelli variantMuts,1289 carefully problematicSites,64 carry nextstrainFreq,317 nextstrainSamples,963 sarsCov2Phylo,913 sarsCov2PhyloPub,1019 cas13 cas13Crispr,1 cas13Crispr,3 cas13Crispr,19 cas13Crispr,124 cas13crispr.bb cas13Crispr,443 casalino abEscape,867 bloomEscMabAvg,871 bloomEscMax,877 bloomEscSerumAvg,872 bloomEscTop,875 escape,874 mccoy,867 rappuoli,874 case potPathoIndel,75 potPathoIndel,124 potPathoIndel,132 potPathoIndel,199 cases problematicSites,289 problematicSites,317 variantMuts,144 catalog epitopes,224 cauldron multiz7way,1138 strainCons119way,2516 strainCons44way,2111 cause variantMuts,124 caution problematicSites,8 problematicSites,151 problematicSites,164 problematicSites,465 problematicSitesCaution,1 problematicSitesCaution,5 caveats PhyloCSF_smooth,278 PhyloCSFpower,293 cd4 cd4Epitopes,1 cd4Epitopes,3 epitopes,23 epitopes,36 poranHla1,15 poranHla2,15 targets,84 cd8 cd8Epitopes,1 cd8Epitopes,3 cd8escape,1 cd8escape,6 cd8escape,219 epitopes,26 epitopes,39 epitopes,92 poranHla1,17 poranHla1,43 poranHla2,17 poranHla2,43 rosettaMhc,1 rosettaMhc,3 rosettaMhc,35 rosettaMhc,171 cd8-hla1.bb poranHla1,233 poranHla2,233 cdc primers,132 primers,173 primers,247 variantMuts,54 cdna augustusGene,299 swift,40 cdphe15 strainCons119way,1448 cds transcriptome,325 vaccines,326 cell Calu3_07hpi,251 ORFs,249 Starr_Bloom,275 Starr_Bloom_bind,269 Vero6_05hpi,251 Vero6_24hpi,251 abEscape,129 abEscape,761 bCellEpitopes,2 bCellEpitopes,4 bloomEscMabAvg,133 bloomEscMabAvg,765 bloomEscMax,139 bloomEscMax,771 bloomEscSerumAvg,134 bloomEscSerumAvg,766 bloomEscTop,137 bloomEscTop,769 cd8escape,44 cd8escape,84 cd8escape,221 epitopes,274 escape,136 escape,768 icshape,220 kimIvtCov,190 kimNp,41 kimNp,122 kimRnaMod,42 kimRnaMod,247 kimTranscripts,151 kimTranscripts,477 mccoy,129 mccoy,761 pbmShanghai,15 pbmShanghai,528 poranHla1,281 poranHla2,281 rappuoli,136 rappuoli,768 rosettaMhc,37 rosettaMhc,127 transcriptome,483 unipCov2Chain,372 unipCov2DisulfBond,368 unipCov2Domain,367 unipCov2LocCytopl,367 unipCov2LocExtra,367 unipCov2LocSignal,368 unipCov2LocTransMemb,368 unipCov2Modif,371 unipCov2Mut,368 unipCov2Other,368 unipCov2Repeat,366 unipCov2Struct,370 weizmanOrfs,257 cells Calu3_07hpi,99 Calu3_07hpi,110 Calu3_07hpi,142 Calu3_07hpi,171 Calu3_07hpi,257 ORFs,97 ORFs,108 ORFs,140 ORFs,169 ORFs,255 SHAPE,6 Vero6_05hpi,99 Vero6_05hpi,110 Vero6_05hpi,142 Vero6_05hpi,171 Vero6_05hpi,257 Vero6_24hpi,99 Vero6_24hpi,110 Vero6_24hpi,142 Vero6_24hpi,171 Vero6_24hpi,257 abEscape,199 bloomEscMabAvg,203 bloomEscMax,209 bloomEscSerumAvg,204 bloomEscTop,207 cd8escape,25 contacts,205 epitopes,22 epitopes,33 escape,206 gordon2,53 mccoy,199 poranHla1,19 poranHla2,19 pyle,224 rappuoli,206 spikeMuts,25 targets,26 targets,87 targets,239 treangen,48 weizmanOrfs,105 weizmanOrfs,116 weizmanOrfs,148 weizmanOrfs,177 weizmanOrfs,263 center sarsCov2PhyloPub,39 variantMuts,1041 centers variantMuts,50 central IgG_Z-score-_COVID-19_patients,440 IgM_Z-score-_COVID-19_patients,440 bpmIggCovidSum,449 bpmIgmCovidSum,449 pbm,449 recomb,105 centre Q0_tracks,240 Q0_tracks,248 Q1_tracks,242 Q1_tracks,250 Q2_tracks,242 Q2_tracks,250 Q3_tracks,242 Q3_tracks,250 galaxyEna,242 galaxyEna,250 galaxyEnaQ0Ba-1,238 galaxyEnaQ0Ba-1,246 galaxyEnaQ0Ba-1-1,238 galaxyEnaQ0Ba-1-1,246 galaxyEnaQ0Ba-1-1-11,238 galaxyEnaQ0Ba-1-1-11,246 galaxyEnaQ0Ba-1-17,238 galaxyEnaQ0Ba-1-17,246 galaxyEnaQ0Ba-2,238 galaxyEnaQ0Ba-2,246 galaxyEnaQ1Ay-4,238 galaxyEnaQ1Ay-4,246 galaxyEnaQ1Ay-4-2,238 galaxyEnaQ1Ay-4-2,246 galaxyEnaQ1Ay-4-2-2,238 galaxyEnaQ1Ay-4-2-2,246 galaxyEnaQ1Ay-43,238 galaxyEnaQ1Ay-43,246 galaxyEnaQ1Ba-1-17,238 galaxyEnaQ1Ba-1-17,246 galaxyEnaQ2Ay-120,238 galaxyEnaQ2Ay-120,246 galaxyEnaQ2Ay-122,238 galaxyEnaQ2Ay-122,246 galaxyEnaQ2Ay-4,238 galaxyEnaQ2Ay-4,246 galaxyEnaQ2Ay-5,238 galaxyEnaQ2Ay-5,246 galaxyEnaQ2Ay-6,238 galaxyEnaQ2Ay-6,246 galaxyEnaQ3Ay-4,238 galaxyEnaQ3Ay-4,246 galaxyEnaQ3Ay-5,238 galaxyEnaQ3Ay-5,246 galaxyEnaQ3Ay-9,238 galaxyEnaQ3Ay-9,246 galaxyEnaQ3B-1-1-7,238 galaxyEnaQ3B-1-1-7,246 galaxyEnaQ3B-1-617-2,238 galaxyEnaQ3B-1-617-2,246 cerevisiae augustusGene,222 certain PhyloCSF_smooth,277 PhyloCSFpower,292 nextstrainSamples,172 resistPred,34 cesaris pyle,59 cg cpgIslandExt,243 cpgIslandExt,281 cpgIslandExt,339 cpgIslandExtUnmasked,246 cpgIslandExtUnmasked,284 cpgIslandExtUnmasked,342 cpgIslandSuper,243 cpgIslandSuper,281 cpgIslandSuper,339 ch.1.1 variantAaMuts_CH_1_1,2 variantAaMuts_CH_1_1,6 variantMuts,502 variantMuts,1141 variantNucMuts_CH_1_1,2 variantNucMuts_CH_1_1,7 chain multiz7way,1124 strainCons119way,2502 strainCons44way,2097 unipCov2Chain,175 unipCov2DisulfBond,171 unipCov2Domain,170 unipCov2LocCytopl,170 unipCov2LocExtra,170 unipCov2LocSignal,171 unipCov2LocTransMemb,171 unipCov2Modif,174 unipCov2Mut,171 unipCov2Other,171 unipCov2Repeat,169 unipCov2Struct,173 chaining multiz7way,668 multiz7way,874 strainCons119way,1017 strainCons119way,2252 strainCons44way,965 strainCons44way,1847 chainnet multiz7way,878 strainCons119way,2256 strainCons44way,1851 chains gordon2,218 multiz7way,643 multiz7way,653 multiz7way,676 multiz7way,688 strainCons119way,992 strainCons119way,1002 strainCons119way,1025 strainCons119way,1037 strainCons44way,940 strainCons44way,950 strainCons44way,973 strainCons44way,985 unipCov2Chain,7 unipCov2Chain,173 unipCov2DisulfBond,169 unipCov2Domain,168 unipCov2LocCytopl,168 unipCov2LocExtra,168 unipCov2LocSignal,169 unipCov2LocTransMemb,169 unipCov2Modif,172 unipCov2Mut,169 unipCov2Other,169 unipCov2Repeat,167 unipCov2Struct,171 chand variantMuts,1328 chang kimIvtCov,183 kimNp,109 kimRnaMod,234 kimTranscripts,470 transcriptome,476 change Q0_tracks,390 Q1_tracks,392 Q2_tracks,392 Q3_tracks,392 Starr_Bloom,28 Starr_Bloom,102 Starr_Bloom_bind,29 Starr_Bloom_bind,96 cpgIslandExt,210 cpgIslandExtUnmasked,213 cpgIslandSuper,210 galaxyEna,392 galaxyEnaQ0Ba-1,388 galaxyEnaQ0Ba-1-1,388 galaxyEnaQ0Ba-1-1-11,388 galaxyEnaQ0Ba-1-17,388 galaxyEnaQ0Ba-2,388 galaxyEnaQ1Ay-4,388 galaxyEnaQ1Ay-4-2,388 galaxyEnaQ1Ay-4-2-2,388 galaxyEnaQ1Ay-43,388 galaxyEnaQ1Ba-1-17,388 galaxyEnaQ2Ay-120,388 galaxyEnaQ2Ay-122,388 galaxyEnaQ2Ay-4,388 galaxyEnaQ2Ay-5,388 galaxyEnaQ2Ay-6,388 galaxyEnaQ3Ay-4,388 galaxyEnaQ3Ay-5,388 galaxyEnaQ3Ay-9,388 galaxyEnaQ3B-1-1-7,388 galaxyEnaQ3B-1-617-2,388 multiz7way,188 multiz7way,210 nextstrainSamples,138 sarsCov2Phylo,438 sarsCov2PhyloPub,467 sarsCov2PhyloPub,775 spikeMuts,44 strainCons119way,537 strainCons119way,559 strainCons44way,485 strainCons44way,507 treangen,249 treangen,259 treangen,275 variantMuts,126 changed Q0_tracks,520 Q1_tracks,522 Q2_tracks,522 Q3_tracks,522 galaxyEna,522 galaxyEnaQ0Ba-1,518 galaxyEnaQ0Ba-1-1,518 galaxyEnaQ0Ba-1-1-11,518 galaxyEnaQ0Ba-1-17,518 galaxyEnaQ0Ba-2,518 galaxyEnaQ1Ay-4,518 galaxyEnaQ1Ay-4-2,518 galaxyEnaQ1Ay-4-2-2,518 galaxyEnaQ1Ay-43,518 galaxyEnaQ1Ba-1-17,518 galaxyEnaQ2Ay-120,518 galaxyEnaQ2Ay-122,518 galaxyEnaQ2Ay-4,518 galaxyEnaQ2Ay-5,518 galaxyEnaQ2Ay-6,518 galaxyEnaQ3Ay-4,518 galaxyEnaQ3Ay-5,518 galaxyEnaQ3Ay-9,518 galaxyEnaQ3B-1-1-7,518 galaxyEnaQ3B-1-617-2,518 spikeMuts,288 changes abEscape,495 bloomEscMabAvg,499 bloomEscMax,505 bloomEscSerumAvg,500 bloomEscTop,503 escape,502 mccoy,495 nextstrainParsimony,111 nextstrainSamples,142 pond,116 pond,134 pond,167 pond,177 pond,281 publicAnnots,59 rappuoli,502 resistPred,156 sarsCov2Phylo,421 sarsCov2PhyloPub,450 strainCons119way,1820 strainCons44way,1415 treangen,128 channel Q0_tracks,1173 Q1_tracks,1175 Q2_tracks,1175 Q3_tracks,1175 galaxyEna,1175 galaxyEnaQ0Ba-1,1171 galaxyEnaQ0Ba-1-1,1171 galaxyEnaQ0Ba-1-1-11,1171 galaxyEnaQ0Ba-1-17,1171 galaxyEnaQ0Ba-2,1171 galaxyEnaQ1Ay-4,1171 galaxyEnaQ1Ay-4-2,1171 galaxyEnaQ1Ay-4-2-2,1171 galaxyEnaQ1Ay-43,1171 galaxyEnaQ1Ba-1-17,1171 galaxyEnaQ2Ay-120,1171 galaxyEnaQ2Ay-122,1171 galaxyEnaQ2Ay-4,1171 galaxyEnaQ2Ay-5,1171 galaxyEnaQ2Ay-6,1171 galaxyEnaQ3Ay-4,1171 galaxyEnaQ3Ay-5,1171 galaxyEnaQ3Ay-9,1171 galaxyEnaQ3B-1-1-7,1171 galaxyEnaQ3B-1-617-2,1171 characteristic PhyloCSF_smooth,30 PhyloCSFpower,45 variantMuts,789 characterization icshape,211 variantMuts,1303 variantMuts,1419 characterize cas13Crispr,301 rosettaMhc,34 characterized cas13Crispr,109 characters problematicSites,244 charbonneau crisprDet,155 charite primers,203 charts spikeMuts,164 check contacts,194 checkbox recomb,66 unipCov2Chain,116 unipCov2DisulfBond,112 unipCov2Domain,111 unipCov2LocCytopl,111 unipCov2LocExtra,111 unipCov2LocSignal,112 unipCov2LocTransMemb,112 unipCov2Modif,115 unipCov2Mut,112 unipCov2Other,112 unipCov2Repeat,110 unipCov2Struct,114 checkboxes multiz7way,248 strainCons119way,597 strainCons44way,545 checked Q0_tracks,992 Q1_tracks,994 Q2_tracks,994 Q3_tracks,994 galaxyEna,994 galaxyEnaQ0Ba-1,990 galaxyEnaQ0Ba-1-1,990 galaxyEnaQ0Ba-1-1-11,990 galaxyEnaQ0Ba-1-17,990 galaxyEnaQ0Ba-2,990 galaxyEnaQ1Ay-4,990 galaxyEnaQ1Ay-4-2,990 galaxyEnaQ1Ay-4-2-2,990 galaxyEnaQ1Ay-43,990 galaxyEnaQ1Ba-1-17,990 galaxyEnaQ2Ay-120,990 galaxyEnaQ2Ay-122,990 galaxyEnaQ2Ay-4,990 galaxyEnaQ2Ay-5,990 galaxyEnaQ2Ay-6,990 galaxyEnaQ3Ay-4,990 galaxyEnaQ3Ay-5,990 galaxyEnaQ3Ay-9,990 galaxyEnaQ3B-1-1-7,990 galaxyEnaQ3B-1-617-2,990 chemical vaccines,602 chemistry rosettaMhc,158 chemparathy cas13Crispr,481 cas13Crispr,504 chen abEscape,783 bloomEscMabAvg,787 bloomEscMax,793 bloomEscSerumAvg,788 bloomEscTop,791 escape,790 mccoy,783 rappuoli,790 chiaromonte multiz7way,1212 strainCons119way,2590 strainCons44way,2185 chicken augustusGene,204 augustusGene,262 chilton Q0_tracks,1239 Q1_tracks,1241 Q2_tracks,1241 Q3_tracks,1241 galaxyEna,1241 galaxyEnaQ0Ba-1,1237 galaxyEnaQ0Ba-1-1,1237 galaxyEnaQ0Ba-1-1-11,1237 galaxyEnaQ0Ba-1-17,1237 galaxyEnaQ0Ba-2,1237 galaxyEnaQ1Ay-4,1237 galaxyEnaQ1Ay-4-2,1237 galaxyEnaQ1Ay-4-2-2,1237 galaxyEnaQ1Ay-43,1237 galaxyEnaQ1Ba-1-17,1237 galaxyEnaQ2Ay-120,1237 galaxyEnaQ2Ay-122,1237 galaxyEnaQ2Ay-4,1237 galaxyEnaQ2Ay-5,1237 galaxyEnaQ2Ay-6,1237 galaxyEnaQ3Ay-4,1237 galaxyEnaQ3Ay-5,1237 galaxyEnaQ3Ay-9,1237 galaxyEnaQ3B-1-1-7,1237 galaxyEnaQ3B-1-617-2,1237 china primers,131 sarsCov2PhyloPub,37 chmod nextstrainSamples,831 chn strainCons119way,1106 strainCons119way,1153 strainCons119way,1181 strainCons119way,1186 strainCons119way,1198 strainCons119way,1203 strainCons119way,1242 strainCons119way,1247 choose augustusGene,171 cpgIslandExt,581 cpgIslandExtUnmasked,584 cpgIslandSuper,581 nextstrainSamples,553 chosen treangen,183 choudhary PhyloCSFpower,726 abEscape,833 bloomEscMabAvg,837 bloomEscMax,843 bloomEscSerumAvg,838 bloomEscTop,841 escape,840 mccoy,833 rappuoli,840 chris genscan,21 genscan,172 unipCov2AliSwissprot,413 unipCov2Chain,643 unipCov2DisulfBond,639 unipCov2Domain,638 unipCov2Interest,296 unipCov2LocCytopl,638 unipCov2LocExtra,638 unipCov2LocSignal,639 unipCov2LocTransMemb,639 unipCov2Modif,642 unipCov2Mut,639 unipCov2Other,639 unipCov2Repeat,637 unipCov2Struct,641 chrisman microdel,269 chrom IgG_Z-score-_COVID-19_patients,377 IgM_Z-score-_COVID-19_patients,377 artic,159 articV4,159 articV4_1,172 bpmIggCovidSum,386 bpmIgmCovidSum,386 cas13Crispr,444 contacts,372 icshape,129 icshape,149 kimRnaMod,206 kimTranscripts,424 ncbiGeneBGP,139 ncbiProducts,155 nextstrainFreq,218 nextstrainFreq,238 pbm,386 phyloGenes,421 poranHla1,234 poranHla2,234 rapid,313 swift,242 transcriptome,430 unipCov2AliSwissprot,370 unipCov2Chain,600 unipCov2DisulfBond,596 unipCov2Domain,595 unipCov2Interest,276 unipCov2LocCytopl,595 unipCov2LocExtra,595 unipCov2LocSignal,596 unipCov2LocTransMemb,596 unipCov2Modif,599 unipCov2Mut,596 unipCov2Other,596 unipCov2Repeat,594 unipCov2Struct,598 varskip,165 chromosome cytoBandIdeo,1 ucscToINSDC,20 ucscToRefSeq,15 chu abEscape,700 bloomEscMabAvg,704 bloomEscMax,710 bloomEscSerumAvg,705 bloomEscTop,708 escape,707 mccoy,700 rappuoli,707 chunlei variantMuts,1490 churchill multiz7way,984 strainCons119way,1829 strainCons119way,2362 strainCons44way,1424 strainCons44way,1957 chx CHX_24hr_1,2 CHX_24hr_1,6 CHX_24hr_2,2 CHX_24hr_2,6 CHX_5hr_1,2 CHX_5hr_1,6 CHX_5hr_2,2 CHX_5hr_2,6 CHX_7hr_1,2 CHX_7hr_1,6 CHX_7hr_2,2 CHX_7hr_2,6 Calu3_07hpi,179 ORFs,177 Vero6_05hpi,179 Vero6_24hpi,179 weizmanOrfs,185 circulating Q0_tracks,635 Q1_tracks,637 Q2_tracks,637 Q3_tracks,637 galaxyEna,637 galaxyEnaQ0Ba-1,633 galaxyEnaQ0Ba-1-1,633 galaxyEnaQ0Ba-1-1-11,633 galaxyEnaQ0Ba-1-17,633 galaxyEnaQ0Ba-2,633 galaxyEnaQ1Ay-4,633 galaxyEnaQ1Ay-4-2,633 galaxyEnaQ1Ay-4-2-2,633 galaxyEnaQ1Ay-43,633 galaxyEnaQ1Ba-1-17,633 galaxyEnaQ2Ay-120,633 galaxyEnaQ2Ay-122,633 galaxyEnaQ2Ay-4,633 galaxyEnaQ2Ay-5,633 galaxyEnaQ2Ay-6,633 galaxyEnaQ3Ay-4,633 galaxyEnaQ3Ay-5,633 galaxyEnaQ3Ay-9,633 galaxyEnaQ3B-1-1-7,633 galaxyEnaQ3B-1-617-2,633 circulation primers,168 citations PhyloCSF_smooth,672 cite PhyloCSF_smooth,692 PhyloCSFpower,658 phyloGenes,485 cited cpgIslandExt,374 cpgIslandExtUnmasked,377 cpgIslandSuper,374 citing PhyloCSFpower,646 rfam,184 city treangen,97 treangen,120 treangen,210 cl00116 rfam,83 cl00117 rfam,85 clade nextstrainClade,5 nextstrainFreq19A,4 nextstrainFreq19B,4 nextstrainFreq20A,4 nextstrainFreq20B,4 nextstrainFreq20C,4 nextstrainFreq20D,4 nextstrainFreq20F,4 nextstrainFreq20G,4 nextstrainFreq21A_Delta,6 nextstrainFreq21B_Kappa,6 nextstrainFreq21D_Eta,6 nextstrainFreq21E_Theta,6 nextstrainFreq21F_Iota,6 nextstrainFreq21G_Lambda,6 nextstrainFreq21H_Mu,6 nextstrainFreq21I_Delta,6 nextstrainFreq21J_Delta,6 nextstrainSamples,204 nextstrainSamples,277 nextstrainSamples,288 nextstrainSamples,591 nextstrainSamples19A,5 nextstrainSamples19B,5 nextstrainSamples20A,5 nextstrainSamples20B,5 nextstrainSamples20C,5 nextstrainSamples20D,5 nextstrainSamples20F,5 nextstrainSamples20G,5 nextstrainSamples21A_Delta,6 nextstrainSamples21B_Kappa,6 nextstrainSamples21D_Eta,6 nextstrainSamples21E_Theta,6 nextstrainSamples21F_Iota,6 nextstrainSamples21G_Lambda,6 nextstrainSamples21H_Mu,6 nextstrainSamples21I_Delta,6 nextstrainSamples21J_Delta,6 sarsCov2Phylo,137 sarsCov2Phylo,173 sarsCov2Phylo,260 sarsCov2Phylo,293 sarsCov2PhyloPub,180 sarsCov2PhyloPub,267 sarsCov2PhyloPub,300 variantMuts,230 variantMuts,251 variantMuts,258 cladegisaid sarsCov2Phylo,172 sarsCov2PhyloPub,179 variantMuts,257 clades nextstrainClade,2 nextstrainClade,58 nextstrainClade,86 nextstrainClade,138 nextstrainFreqViewNewClades,2 nextstrainSamples,173 nextstrainSamples,187 nextstrainSamples,194 nextstrainSamples,296 nextstrainSamples,565 nextstrainSamples,567 nextstrainSamplesViewNewClades,2 sarsCov2Phylo,165 sarsCov2Phylo,168 sarsCov2Phylo,1001 sarsCov2PhyloPub,171 sarsCov2PhyloPub,174 sarsCov2PhyloPub,1121 clades.tsv nextstrainClade,147 nextstrainClade,154 clans rfam,76 class cd8escape,36 iedb,19 classes strainCons119way,286 strainCons44way,234 classification variantMuts,55 clawson gc5BaseBw,83 multiz7way,917 multiz7way,1048 multiz7way,1183 strainCons119way,2295 strainCons119way,2426 strainCons119way,2561 strainCons44way,1890 strainCons44way,2021 strainCons44way,2156 ucscToINSDC,52 ucscToRefSeq,46 vaccines,643 clear problematicSites,263 strainCons119way,631 strainCons44way,579 cleavage ncbiProducts,48 unipCov2Chain,9 cleaved unipCov2Chain,134 unipCov2DisulfBond,130 unipCov2Domain,129 unipCov2LocCytopl,129 unipCov2LocExtra,129 unipCov2LocSignal,130 unipCov2LocTransMemb,130 unipCov2Modif,133 unipCov2Mut,130 unipCov2Other,130 unipCov2Repeat,128 unipCov2Struct,132 click abEscape,427 abEscape,517 abEscape,552 addgene,131 artic,39 articV4,42 articV4_1,53 bloomEscMabAvg,431 bloomEscMabAvg,521 bloomEscMabAvg,556 bloomEscMax,437 bloomEscMax,527 bloomEscMax,562 bloomEscSerumAvg,432 bloomEscSerumAvg,522 bloomEscSerumAvg,557 bloomEscTop,435 bloomEscTop,525 bloomEscTop,560 escape,16 escape,434 escape,524 escape,559 gc5BaseBw,56 iedb,57 mccoy,427 mccoy,517 mccoy,552 multiz7way,292 multiz7way,314 nextstrainParsimony,394 nextstrainSamples,108 nextstrainSamples,721 nextstrainSamples,984 nextstrainSamples,988 pdb,75 poranHla1,107 poranHla2,107 rapid,166 rappuoli,434 rappuoli,524 rappuoli,559 resist,73 resistPred,144 strainCons119way,662 strainCons44way,610 swift,103 unipCov2AliSwissprot,107 unipCov2Chain,114 unipCov2Chain,292 unipCov2DisulfBond,110 unipCov2DisulfBond,288 unipCov2Domain,109 unipCov2Domain,287 unipCov2Interest,61 unipCov2LocCytopl,109 unipCov2LocCytopl,287 unipCov2LocExtra,109 unipCov2LocExtra,287 unipCov2LocSignal,110 unipCov2LocSignal,288 unipCov2LocTransMemb,110 unipCov2LocTransMemb,288 unipCov2Modif,113 unipCov2Modif,291 unipCov2Mut,110 unipCov2Mut,288 unipCov2Other,110 unipCov2Other,288 unipCov2Repeat,108 unipCov2Repeat,286 unipCov2Struct,112 unipCov2Struct,290 clickable abEscape,485 bloomEscMabAvg,489 bloomEscMax,495 bloomEscSerumAvg,490 bloomEscTop,493 escape,492 iedb,77 mccoy,485 rappuoli,492 clicking kimNp,82 sarsCov2Phylo,547 sarsCov2PhyloPub,572 cliff icshape,33 icshape,206 clinical sarsCov2PhyloPub,932 spikeMuts,156 clipper contacts,160 cloned gordon2,38 close contacts,125 resistPred,32 closer contacts,112 closest augustusGene,241 cluster variantMuts,142 clusters pond,277 cmsearch rfam,47 rfam,57 cn-cdc primers,130 cncb sarsCov2PhyloPub,728 code PhyloCSF_smooth,83 PhyloCSFpower,98 ncbiGeneBGP,94 ncbiGeneBGP,108 ncbiProducts,110 ncbiProducts,124 unipCov2AliSwissprot,246 unipCov2AliSwissprot,326 unipCov2AliSwissprot,340 unipCov2Chain,476 unipCov2Chain,556 unipCov2Chain,570 unipCov2DisulfBond,472 unipCov2DisulfBond,552 unipCov2DisulfBond,566 unipCov2Domain,471 unipCov2Domain,551 unipCov2Domain,565 unipCov2Interest,152 unipCov2Interest,232 unipCov2Interest,246 unipCov2LocCytopl,471 unipCov2LocCytopl,551 unipCov2LocCytopl,565 unipCov2LocExtra,471 unipCov2LocExtra,551 unipCov2LocExtra,565 unipCov2LocSignal,472 unipCov2LocSignal,552 unipCov2LocSignal,566 unipCov2LocTransMemb,472 unipCov2LocTransMemb,552 unipCov2LocTransMemb,566 unipCov2Modif,475 unipCov2Modif,555 unipCov2Modif,569 unipCov2Mut,472 unipCov2Mut,552 unipCov2Mut,566 unipCov2Other,472 unipCov2Other,552 unipCov2Other,566 unipCov2Repeat,470 unipCov2Repeat,550 unipCov2Repeat,564 unipCov2Struct,474 unipCov2Struct,554 unipCov2Struct,568 vaccines,416 vaccines,430 vaccines,535 windowmaskerSdust,34 coding Calu3_07hpi,87 Calu3_07hpi,369 ORFs,85 ORFs,367 PhyloCSF_smooth,35 PhyloCSF_smooth,304 PhyloCSF_smooth,444 PhyloCSF_smooth,468 PhyloCSF_smooth,489 PhyloCSF_smooth,511 PhyloCSF_smooth,522 PhyloCSF_smooth,556 PhyloCSF_smooth,608 PhyloCSF_smooth,717 PhyloCSFpower,50 PhyloCSFpower,319 PhyloCSFpower,459 PhyloCSFpower,483 PhyloCSFpower,504 PhyloCSFpower,526 PhyloCSFpower,537 PhyloCSFpower,571 PhyloCSFpower,619 Vero6_05hpi,87 Vero6_05hpi,369 Vero6_24hpi,87 Vero6_24hpi,369 multiz7way,183 multiz7way,205 multiz7way,228 multiz7way,527 multiz7way,552 simpleRepeat,38 strainCons119way,532 strainCons119way,554 strainCons119way,577 strainCons119way,768 strainCons119way,877 strainCons119way,902 strainCons44way,480 strainCons44way,502 strainCons44way,525 strainCons44way,716 strainCons44way,825 strainCons44way,850 weizmanOrfs,93 weizmanOrfs,375 codon PhyloCSF_smooth,44 PhyloCSF_smooth,62 PhyloCSF_smooth,135 PhyloCSF_smooth,190 PhyloCSF_smooth,345 PhyloCSF_smooth,392 PhyloCSF_smooth,455 PhyloCSF_smooth,554 PhyloCSF_smooth,564 PhyloCSFpower,59 PhyloCSFpower,77 PhyloCSFpower,150 PhyloCSFpower,205 PhyloCSFpower,360 PhyloCSFpower,407 PhyloCSFpower,470 PhyloCSFpower,569 PhyloCSFpower,579 Starr_Bloom,94 Starr_Bloom_bind,88 contacts,239 contacts,243 genscan,100 genscan,122 multiz7way,410 multiz7way,435 multiz7way,453 multiz7way,512 multiz7way,539 multiz7way,926 phyloGenes,101 phyloGenes,127 phyloGenes,198 phyloGenes,223 phyloGenes,246 phyloGenes,263 phyloGenes,276 phyloGenes,293 phyloGenes,304 strainCons119way,291 strainCons119way,752 strainCons119way,785 strainCons119way,803 strainCons119way,862 strainCons119way,889 strainCons119way,2304 strainCons44way,239 strainCons44way,700 strainCons44way,733 strainCons44way,751 strainCons44way,810 strainCons44way,837 strainCons44way,1899 codons PhyloCSF_smooth,81 PhyloCSF_smooth,149 PhyloCSF_smooth,230 PhyloCSF_smooth,259 PhyloCSF_smooth,260 PhyloCSF_smooth,567 PhyloCSF_smooth,581 PhyloCSF_smooth,583 PhyloCSF_smooth,594 PhyloCSFpower,96 PhyloCSFpower,164 PhyloCSFpower,245 PhyloCSFpower,274 PhyloCSFpower,275 PhyloCSFpower,582 PhyloCSFpower,596 PhyloCSFpower,598 PhyloCSFpower,609 genscan,89 genscan,93 multiz7way,790 strainCons119way,1662 strainCons44way,1257 vaccines,166 cog-uk Q0_tracks,1218 Q1_tracks,1220 Q2_tracks,1220 Q3_tracks,1220 galaxyEna,1220 galaxyEnaQ0Ba-1,1216 galaxyEnaQ0Ba-1-1,1216 galaxyEnaQ0Ba-1-1-11,1216 galaxyEnaQ0Ba-1-17,1216 galaxyEnaQ0Ba-2,1216 galaxyEnaQ1Ay-4,1216 galaxyEnaQ1Ay-4-2,1216 galaxyEnaQ1Ay-4-2-2,1216 galaxyEnaQ1Ay-43,1216 galaxyEnaQ1Ba-1-17,1216 galaxyEnaQ2Ay-120,1216 galaxyEnaQ2Ay-122,1216 galaxyEnaQ2Ay-4,1216 galaxyEnaQ2Ay-5,1216 galaxyEnaQ2Ay-6,1216 galaxyEnaQ3Ay-4,1216 galaxyEnaQ3Ay-5,1216 galaxyEnaQ3Ay-9,1216 galaxyEnaQ3B-1-1-7,1216 galaxyEnaQ3B-1-617-2,1216 sarsCov2PhyloPub,34 sarsCov2PhyloPub,725 cohort abEscape,106 bloomEscMabAvg,110 bloomEscMax,116 bloomEscSerumAvg,111 bloomEscTop,114 escape,113 mccoy,106 rappuoli,113 coiled-coil unipCov2Chain,226 unipCov2DisulfBond,222 unipCov2Domain,221 unipCov2LocCytopl,221 unipCov2LocExtra,221 unipCov2LocSignal,222 unipCov2LocTransMemb,222 unipCov2Modif,225 unipCov2Mut,222 unipCov2Other,222 unipCov2Repeat,220 unipCov2Struct,224 cold multiz7way,861 strainCons119way,2239 strainCons44way,1834 collaboration ucscToINSDC,9 ucscToINSDC,31 collapsed sarsCov2Phylo,102 sarsCov2PhyloPub,115 sarsCov2PhyloPub,802 sarsCov2PhyloPub,856 collapsing sarsCov2Phylo,684 collected Q0_tracks,296 Q0_tracks,701 Q1_tracks,298 Q1_tracks,703 Q2_tracks,298 Q2_tracks,703 Q3_tracks,298 Q3_tracks,703 cd8escape,156 epitopes,304 galaxyEna,298 galaxyEna,703 galaxyEnaQ0Ba-1,294 galaxyEnaQ0Ba-1,699 galaxyEnaQ0Ba-1-1,294 galaxyEnaQ0Ba-1-1,699 galaxyEnaQ0Ba-1-1-11,294 galaxyEnaQ0Ba-1-1-11,699 galaxyEnaQ0Ba-1-17,294 galaxyEnaQ0Ba-1-17,699 galaxyEnaQ0Ba-2,294 galaxyEnaQ0Ba-2,699 galaxyEnaQ1Ay-4,294 galaxyEnaQ1Ay-4,699 galaxyEnaQ1Ay-4-2,294 galaxyEnaQ1Ay-4-2,699 galaxyEnaQ1Ay-4-2-2,294 galaxyEnaQ1Ay-4-2-2,699 galaxyEnaQ1Ay-43,294 galaxyEnaQ1Ay-43,699 galaxyEnaQ1Ba-1-17,294 galaxyEnaQ1Ba-1-17,699 galaxyEnaQ2Ay-120,294 galaxyEnaQ2Ay-120,699 galaxyEnaQ2Ay-122,294 galaxyEnaQ2Ay-122,699 galaxyEnaQ2Ay-4,294 galaxyEnaQ2Ay-4,699 galaxyEnaQ2Ay-5,294 galaxyEnaQ2Ay-5,699 galaxyEnaQ2Ay-6,294 galaxyEnaQ2Ay-6,699 galaxyEnaQ3Ay-4,294 galaxyEnaQ3Ay-4,699 galaxyEnaQ3Ay-5,294 galaxyEnaQ3Ay-5,699 galaxyEnaQ3Ay-9,294 galaxyEnaQ3Ay-9,699 galaxyEnaQ3B-1-1-7,294 galaxyEnaQ3B-1-1-7,699 galaxyEnaQ3B-1-617-2,294 galaxyEnaQ3B-1-617-2,699 nextstrainClade,228 nextstrainFreq,361 nextstrainGene,177 nextstrainParsimony,440 nextstrainSamples,917 primers,372 problematicSites,107 sarsCov2Phylo,31 sarsCov2Phylo,742 sarsCov2Phylo,845 variantMuts,200 collecting Q0_tracks,611 Q1_tracks,613 Q2_tracks,613 Q3_tracks,613 galaxyEna,613 galaxyEnaQ0Ba-1,609 galaxyEnaQ0Ba-1-1,609 galaxyEnaQ0Ba-1-1-11,609 galaxyEnaQ0Ba-1-17,609 galaxyEnaQ0Ba-2,609 galaxyEnaQ1Ay-4,609 galaxyEnaQ1Ay-4-2,609 galaxyEnaQ1Ay-4-2-2,609 galaxyEnaQ1Ay-43,609 galaxyEnaQ1Ba-1-17,609 galaxyEnaQ2Ay-120,609 galaxyEnaQ2Ay-122,609 galaxyEnaQ2Ay-4,609 galaxyEnaQ2Ay-5,609 galaxyEnaQ2Ay-6,609 galaxyEnaQ3Ay-4,609 galaxyEnaQ3Ay-5,609 galaxyEnaQ3Ay-9,609 galaxyEnaQ3B-1-1-7,609 galaxyEnaQ3B-1-617-2,609 collection Calu3_07hpi,34 ORFs,32 Q0_tracks,99 Q0_tracks,340 Q0_tracks,607 Q0_tracks,638 Q0_tracks,694 Q0_tracks,873 Q0_tracks,1041 Q1_tracks,101 Q1_tracks,342 Q1_tracks,609 Q1_tracks,640 Q1_tracks,696 Q1_tracks,875 Q1_tracks,1043 Q2_tracks,101 Q2_tracks,342 Q2_tracks,609 Q2_tracks,640 Q2_tracks,696 Q2_tracks,875 Q2_tracks,1043 Q3_tracks,101 Q3_tracks,342 Q3_tracks,609 Q3_tracks,640 Q3_tracks,696 Q3_tracks,875 Q3_tracks,1043 Vero6_05hpi,34 Vero6_24hpi,34 cas13Crispr,42 galaxyEna,101 galaxyEna,342 galaxyEna,609 galaxyEna,640 galaxyEna,696 galaxyEna,875 galaxyEna,1043 galaxyEnaQ0Ba-1,97 galaxyEnaQ0Ba-1,338 galaxyEnaQ0Ba-1,605 galaxyEnaQ0Ba-1,636 galaxyEnaQ0Ba-1,692 galaxyEnaQ0Ba-1,871 galaxyEnaQ0Ba-1,1039 galaxyEnaQ0Ba-1-1,97 galaxyEnaQ0Ba-1-1,338 galaxyEnaQ0Ba-1-1,605 galaxyEnaQ0Ba-1-1,636 galaxyEnaQ0Ba-1-1,692 galaxyEnaQ0Ba-1-1,871 galaxyEnaQ0Ba-1-1,1039 galaxyEnaQ0Ba-1-1-11,97 galaxyEnaQ0Ba-1-1-11,338 galaxyEnaQ0Ba-1-1-11,605 galaxyEnaQ0Ba-1-1-11,636 galaxyEnaQ0Ba-1-1-11,692 galaxyEnaQ0Ba-1-1-11,871 galaxyEnaQ0Ba-1-1-11,1039 galaxyEnaQ0Ba-1-17,97 galaxyEnaQ0Ba-1-17,338 galaxyEnaQ0Ba-1-17,605 galaxyEnaQ0Ba-1-17,636 galaxyEnaQ0Ba-1-17,692 galaxyEnaQ0Ba-1-17,871 galaxyEnaQ0Ba-1-17,1039 galaxyEnaQ0Ba-2,97 galaxyEnaQ0Ba-2,338 galaxyEnaQ0Ba-2,605 galaxyEnaQ0Ba-2,636 galaxyEnaQ0Ba-2,692 galaxyEnaQ0Ba-2,871 galaxyEnaQ0Ba-2,1039 galaxyEnaQ1Ay-4,97 galaxyEnaQ1Ay-4,338 galaxyEnaQ1Ay-4,605 galaxyEnaQ1Ay-4,636 galaxyEnaQ1Ay-4,692 galaxyEnaQ1Ay-4,871 galaxyEnaQ1Ay-4,1039 galaxyEnaQ1Ay-4-2,97 galaxyEnaQ1Ay-4-2,338 galaxyEnaQ1Ay-4-2,605 galaxyEnaQ1Ay-4-2,636 galaxyEnaQ1Ay-4-2,692 galaxyEnaQ1Ay-4-2,871 galaxyEnaQ1Ay-4-2,1039 galaxyEnaQ1Ay-4-2-2,97 galaxyEnaQ1Ay-4-2-2,338 galaxyEnaQ1Ay-4-2-2,605 galaxyEnaQ1Ay-4-2-2,636 galaxyEnaQ1Ay-4-2-2,692 galaxyEnaQ1Ay-4-2-2,871 galaxyEnaQ1Ay-4-2-2,1039 galaxyEnaQ1Ay-43,97 galaxyEnaQ1Ay-43,338 galaxyEnaQ1Ay-43,605 galaxyEnaQ1Ay-43,636 galaxyEnaQ1Ay-43,692 galaxyEnaQ1Ay-43,871 galaxyEnaQ1Ay-43,1039 galaxyEnaQ1Ba-1-17,97 galaxyEnaQ1Ba-1-17,338 galaxyEnaQ1Ba-1-17,605 galaxyEnaQ1Ba-1-17,636 galaxyEnaQ1Ba-1-17,692 galaxyEnaQ1Ba-1-17,871 galaxyEnaQ1Ba-1-17,1039 galaxyEnaQ2Ay-120,97 galaxyEnaQ2Ay-120,338 galaxyEnaQ2Ay-120,605 galaxyEnaQ2Ay-120,636 galaxyEnaQ2Ay-120,692 galaxyEnaQ2Ay-120,871 galaxyEnaQ2Ay-120,1039 galaxyEnaQ2Ay-122,97 galaxyEnaQ2Ay-122,338 galaxyEnaQ2Ay-122,605 galaxyEnaQ2Ay-122,636 galaxyEnaQ2Ay-122,692 galaxyEnaQ2Ay-122,871 galaxyEnaQ2Ay-122,1039 galaxyEnaQ2Ay-4,97 galaxyEnaQ2Ay-4,338 galaxyEnaQ2Ay-4,605 galaxyEnaQ2Ay-4,636 galaxyEnaQ2Ay-4,692 galaxyEnaQ2Ay-4,871 galaxyEnaQ2Ay-4,1039 galaxyEnaQ2Ay-5,97 galaxyEnaQ2Ay-5,338 galaxyEnaQ2Ay-5,605 galaxyEnaQ2Ay-5,636 galaxyEnaQ2Ay-5,692 galaxyEnaQ2Ay-5,871 galaxyEnaQ2Ay-5,1039 galaxyEnaQ2Ay-6,97 galaxyEnaQ2Ay-6,338 galaxyEnaQ2Ay-6,605 galaxyEnaQ2Ay-6,636 galaxyEnaQ2Ay-6,692 galaxyEnaQ2Ay-6,871 galaxyEnaQ2Ay-6,1039 galaxyEnaQ3Ay-4,97 galaxyEnaQ3Ay-4,338 galaxyEnaQ3Ay-4,605 galaxyEnaQ3Ay-4,636 galaxyEnaQ3Ay-4,692 galaxyEnaQ3Ay-4,871 galaxyEnaQ3Ay-4,1039 galaxyEnaQ3Ay-5,97 galaxyEnaQ3Ay-5,338 galaxyEnaQ3Ay-5,605 galaxyEnaQ3Ay-5,636 galaxyEnaQ3Ay-5,692 galaxyEnaQ3Ay-5,871 galaxyEnaQ3Ay-5,1039 galaxyEnaQ3Ay-9,97 galaxyEnaQ3Ay-9,338 galaxyEnaQ3Ay-9,605 galaxyEnaQ3Ay-9,636 galaxyEnaQ3Ay-9,692 galaxyEnaQ3Ay-9,871 galaxyEnaQ3Ay-9,1039 galaxyEnaQ3B-1-1-7,97 galaxyEnaQ3B-1-1-7,338 galaxyEnaQ3B-1-1-7,605 galaxyEnaQ3B-1-1-7,636 galaxyEnaQ3B-1-1-7,692 galaxyEnaQ3B-1-1-7,871 galaxyEnaQ3B-1-1-7,1039 galaxyEnaQ3B-1-617-2,97 galaxyEnaQ3B-1-617-2,338 galaxyEnaQ3B-1-617-2,605 galaxyEnaQ3B-1-617-2,636 galaxyEnaQ3B-1-617-2,692 galaxyEnaQ3B-1-617-2,871 galaxyEnaQ3B-1-617-2,1039 problematicSites,458 variantMuts,813 weizmanOrfs,40 collections addgene,64 sarsCov2Phylo,1160 sarsCov2PhyloPub,1293 collins vaccines,572 colombia variantMuts,649 color IgG_Z-score-_COVID-19_patients,133 IgM_Z-score-_COVID-19_patients,133 abEscape,401 bloomEscMabAvg,405 bloomEscMax,411 bloomEscSerumAvg,406 bloomEscTop,409 bpmIggCovidSum,142 bpmIgmCovidSum,142 epitopes,42 escape,408 genscan,86 genscan,96 mccoy,401 nextstrainSamples,200 nextstrainSamples,595 pbm,142 pbmShanghai,219 pbmShanghai,252 pbmShanghai,259 pbmShanghai,262 rappuoli,408 rnaStructRangan,65 sarsCov2Phylo,199 sarsCov2Phylo,227 sarsCov2PhyloPub,206 sarsCov2PhyloPub,234 spikeMuts,284 vaccines,163 coloration gold,93 colored multiz7way,104 nextstrainSamples,589 problematicSites,124 sarsCov2PhyloPub,139 spikeMuts,184 strainCons119way,453 strainCons44way,401 coloring genscan,116 sarsCov2Phylo,126 sarsCov2Phylo,141 sarsCov2Phylo,203 sarsCov2Phylo,231 sarsCov2PhyloPub,147 sarsCov2PhyloPub,210 sarsCov2PhyloPub,238 variantMuts,231 colorlineage sarsCov2Phylo,169 colormap IgG_Z-score-_COVID-19_patients,240 IgM_Z-score-_COVID-19_patients,240 bpmIggCovidSum,249 bpmIgmCovidSum,249 pbm,249 pbmShanghai,388 colorpangolin sarsCov2PhyloPub,175 colors IgG_Z-score-_COVID-19_patients,161 IgM_Z-score-_COVID-19_patients,161 bpmIggCovidSum,170 bpmIgmCovidSum,170 multiz7way,171 nextstrainSamples,205 pbm,170 strainCons119way,520 strainCons44way,468 variantMuts,225 variantMuts,1094 colorwho variantMuts,253 columbia variantAaMutsV2_B_1_621,7 variantNucMutsV2_B_1_621,7 column contacts,198 contacts,240 nextstrainSamples,112 nextstrainSamples,471 sarsCov2Phylo,501 sarsCov2PhyloPub,530 strainCons119way,202 strainCons119way,1868 strainCons119way,2050 strainCons44way,150 strainCons44way,1463 strainCons44way,1645 columns nextstrainSamples,856 strainCons119way,207 strainCons119way,216 strainCons44way,155 strainCons44way,164 combat cas13Crispr,516 spikeMuts,34 combination Q0_tracks,683 Q1_tracks,685 Q2_tracks,685 Q3_tracks,685 galaxyEna,685 galaxyEnaQ0Ba-1,681 galaxyEnaQ0Ba-1-1,681 galaxyEnaQ0Ba-1-1-11,681 galaxyEnaQ0Ba-1-17,681 galaxyEnaQ0Ba-2,681 galaxyEnaQ1Ay-4,681 galaxyEnaQ1Ay-4-2,681 galaxyEnaQ1Ay-4-2-2,681 galaxyEnaQ1Ay-43,681 galaxyEnaQ1Ba-1-17,681 galaxyEnaQ2Ay-120,681 galaxyEnaQ2Ay-122,681 galaxyEnaQ2Ay-4,681 galaxyEnaQ2Ay-5,681 galaxyEnaQ2Ay-6,681 galaxyEnaQ3Ay-4,681 galaxyEnaQ3Ay-5,681 galaxyEnaQ3Ay-9,681 galaxyEnaQ3B-1-1-7,681 galaxyEnaQ3B-1-617-2,681 potPathoIndel,137 combined Calu3_07hpi,319 IgG_Z-score-_COVID-19_patients,295 IgM_Z-score-_COVID-19_patients,295 ORFs,317 PhyloCSF_smooth,637 Starr_Bloom,211 Starr_Bloom_bind,205 Vero6_05hpi,319 Vero6_24hpi,319 abEscape,663 artic,78 articV4,78 articV4_1,91 bloomEscMabAvg,667 bloomEscMax,673 bloomEscSerumAvg,668 bloomEscTop,671 bpmIggCovidSum,304 bpmIgmCovidSum,304 cas13Crispr,363 contacts,291 escape,670 kimRnaMod,125 kimTranscripts,342 mccoy,663 microdel,150 pbm,304 pbmShanghai,421 phyloGenes,339 poranHla1,59 poranHla1,152 poranHla2,59 poranHla2,152 rapid,109 rapid,232 rappuoli,670 rosettaMhc,205 swift,161 transcriptome,348 variantMuts,960 varskip,84 weizmanOrfs,325 comes Q0_tracks,282 Q1_tracks,284 Q2_tracks,284 Q3_tracks,284 galaxyEna,284 galaxyEnaQ0Ba-1,280 galaxyEnaQ0Ba-1-1,280 galaxyEnaQ0Ba-1-1-11,280 galaxyEnaQ0Ba-1-17,280 galaxyEnaQ0Ba-2,280 galaxyEnaQ1Ay-4,280 galaxyEnaQ1Ay-4-2,280 galaxyEnaQ1Ay-4-2-2,280 galaxyEnaQ1Ay-43,280 galaxyEnaQ1Ba-1-17,280 galaxyEnaQ2Ay-120,280 galaxyEnaQ2Ay-122,280 galaxyEnaQ2Ay-4,280 galaxyEnaQ2Ay-5,280 galaxyEnaQ2Ay-6,280 galaxyEnaQ3Ay-4,280 galaxyEnaQ3Ay-5,280 galaxyEnaQ3Ay-9,280 galaxyEnaQ3B-1-1-7,280 galaxyEnaQ3B-1-617-2,280 coming nextstrainClade,74 command IgG_Z-score-_COVID-19_patients,216 IgG_Z-score-_COVID-19_patients,342 IgM_Z-score-_COVID-19_patients,216 IgM_Z-score-_COVID-19_patients,342 artic,125 articV4,125 articV4_1,138 bpmIggCovidSum,225 bpmIggCovidSum,351 bpmIgmCovidSum,225 bpmIgmCovidSum,351 cas13Crispr,410 contacts,338 cpgIslandExt,409 cpgIslandExt,503 cpgIslandExtUnmasked,412 cpgIslandExtUnmasked,506 cpgIslandSuper,409 cpgIslandSuper,503 icshape,146 kimRnaMod,172 kimTranscripts,389 multiz7way,759 nextstrainFreq,235 nextstrainSamples,813 nextstrainSamples,824 nextstrainSamples,836 nextstrainSamples,847 pbm,225 pbm,351 pbmShanghai,372 pbmShanghai,468 phyloGenes,386 poranHla1,199 poranHla2,199 primers,288 rapid,279 strainCons119way,1519 strainCons44way,1189 swift,208 transcriptome,395 vaccines,404 varskip,131 command-line IgG_Z-score-_COVID-19_patients,335 IgM_Z-score-_COVID-19_patients,335 artic,118 articV4,118 articV4_1,131 bpmIggCovidSum,344 bpmIgmCovidSum,344 cas13Crispr,403 contacts,331 icshape,135 kimRnaMod,165 kimTranscripts,382 nextstrainFreq,224 pbm,344 pbmShanghai,461 phyloGenes,379 poranHla1,192 poranHla2,192 rapid,272 swift,201 transcriptome,388 varskip,124 commands IgG_Z-score-_COVID-19_patients,273 IgM_Z-score-_COVID-19_patients,273 bpmIggCovidSum,282 bpmIgmCovidSum,282 pbm,282 pbmShanghai,399 comment unipCov2AliSwissprot,135 unipCov2Chain,145 unipCov2Chain,167 unipCov2Chain,341 unipCov2DisulfBond,141 unipCov2DisulfBond,163 unipCov2DisulfBond,337 unipCov2Domain,140 unipCov2Domain,162 unipCov2Domain,336 unipCov2Interest,78 unipCov2LocCytopl,140 unipCov2LocCytopl,162 unipCov2LocCytopl,336 unipCov2LocExtra,140 unipCov2LocExtra,162 unipCov2LocExtra,336 unipCov2LocSignal,141 unipCov2LocSignal,163 unipCov2LocSignal,337 unipCov2LocTransMemb,141 unipCov2LocTransMemb,163 unipCov2LocTransMemb,337 unipCov2Modif,144 unipCov2Modif,166 unipCov2Modif,340 unipCov2Mut,141 unipCov2Mut,163 unipCov2Mut,337 unipCov2Other,141 unipCov2Other,163 unipCov2Other,337 unipCov2Repeat,139 unipCov2Repeat,161 unipCov2Repeat,335 unipCov2Struct,143 unipCov2Struct,165 unipCov2Struct,339 common Q0_tracks,371 Q1_tracks,373 Q2_tracks,373 Q3_tracks,373 cpgIslandExt,30 cpgIslandExtUnmasked,33 cpgIslandSuper,30 galaxyEna,373 galaxyEnaQ0Ba-1,369 galaxyEnaQ0Ba-1-1,369 galaxyEnaQ0Ba-1-1-11,369 galaxyEnaQ0Ba-1-17,369 galaxyEnaQ0Ba-2,369 galaxyEnaQ1Ay-4,369 galaxyEnaQ1Ay-4-2,369 galaxyEnaQ1Ay-4-2-2,369 galaxyEnaQ1Ay-43,369 galaxyEnaQ1Ba-1-17,369 galaxyEnaQ2Ay-120,369 galaxyEnaQ2Ay-122,369 galaxyEnaQ2Ay-4,369 galaxyEnaQ2Ay-5,369 galaxyEnaQ2Ay-6,369 galaxyEnaQ3Ay-4,369 galaxyEnaQ3Ay-5,369 galaxyEnaQ3Ay-9,369 galaxyEnaQ3B-1-1-7,369 galaxyEnaQ3B-1-617-2,369 multiz7way,68 multiz7way,77 rosettaMhc,102 sarsCov2Phylo,44 sarsCov2PhyloPub,58 commonly rapid,28 rapid,151 communication Q0_tracks,81 Q1_tracks,83 Q2_tracks,83 Q3_tracks,83 galaxyEna,83 galaxyEnaQ0Ba-1,79 galaxyEnaQ0Ba-1-1,79 galaxyEnaQ0Ba-1-1-11,79 galaxyEnaQ0Ba-1-17,79 galaxyEnaQ0Ba-2,79 galaxyEnaQ1Ay-4,79 galaxyEnaQ1Ay-4-2,79 galaxyEnaQ1Ay-4-2-2,79 galaxyEnaQ1Ay-43,79 galaxyEnaQ1Ba-1-17,79 galaxyEnaQ2Ay-120,79 galaxyEnaQ2Ay-122,79 galaxyEnaQ2Ay-4,79 galaxyEnaQ2Ay-5,79 galaxyEnaQ2Ay-6,79 galaxyEnaQ3Ay-4,79 galaxyEnaQ3Ay-5,79 galaxyEnaQ3Ay-9,79 galaxyEnaQ3B-1-1-7,79 galaxyEnaQ3B-1-617-2,79 communications phyloGenes,607 community Q0_tracks,1120 Q1_tracks,1122 Q2_tracks,1122 Q3_tracks,1122 galaxyEna,1122 galaxyEnaQ0Ba-1,1118 galaxyEnaQ0Ba-1-1,1118 galaxyEnaQ0Ba-1-1-11,1118 galaxyEnaQ0Ba-1-17,1118 galaxyEnaQ0Ba-2,1118 galaxyEnaQ1Ay-4,1118 galaxyEnaQ1Ay-4-2,1118 galaxyEnaQ1Ay-4-2-2,1118 galaxyEnaQ1Ay-43,1118 galaxyEnaQ1Ba-1-17,1118 galaxyEnaQ2Ay-120,1118 galaxyEnaQ2Ay-122,1118 galaxyEnaQ2Ay-4,1118 galaxyEnaQ2Ay-5,1118 galaxyEnaQ2Ay-6,1118 galaxyEnaQ3Ay-4,1118 galaxyEnaQ3Ay-5,1118 galaxyEnaQ3Ay-9,1118 galaxyEnaQ3B-1-1-7,1118 galaxyEnaQ3B-1-617-2,1118 spikeMuts,7 spikeMuts,105 spikeMuts,376 variantMuts,139 community-developed Q0_tracks,194 Q1_tracks,196 Q2_tracks,196 Q3_tracks,196 galaxyEna,196 galaxyEnaQ0Ba-1,192 galaxyEnaQ0Ba-1-1,192 galaxyEnaQ0Ba-1-1-11,192 galaxyEnaQ0Ba-1-17,192 galaxyEnaQ0Ba-2,192 galaxyEnaQ1Ay-4,192 galaxyEnaQ1Ay-4-2,192 galaxyEnaQ1Ay-4-2-2,192 galaxyEnaQ1Ay-43,192 galaxyEnaQ1Ba-1-17,192 galaxyEnaQ2Ay-120,192 galaxyEnaQ2Ay-122,192 galaxyEnaQ2Ay-4,192 galaxyEnaQ2Ay-5,192 galaxyEnaQ2Ay-6,192 galaxyEnaQ3Ay-4,192 galaxyEnaQ3Ay-5,192 galaxyEnaQ3Ay-9,192 galaxyEnaQ3B-1-1-7,192 galaxyEnaQ3B-1-617-2,192 compact sarsCov2PhyloPub,753 comparable abEscape,345 abEscape,356 bloomEscMabAvg,349 bloomEscMabAvg,360 bloomEscMax,355 bloomEscMax,366 bloomEscSerumAvg,350 bloomEscSerumAvg,361 bloomEscTop,353 bloomEscTop,364 escape,352 escape,363 mccoy,345 mccoy,356 rappuoli,352 rappuoli,363 comparative PhyloCSF_minus_1,8 PhyloCSF_minus_2,8 PhyloCSF_minus_3,8 PhyloCSF_plus_1,9 PhyloCSF_plus_2,9 PhyloCSF_plus_3,9 PhyloCSF_smooth,3 PhyloCSF_smooth,711 PhyloCSF_smooth,788 PhyloCSFpower,15 PhyloCSFpower,682 PhyloCSFpower,765 multiz7way,13 multiz7way,55 phyloGenes,34 phyloGenes,503 potPathoIndel,139 primers,250 rosettaMhc,54 strainCons119way,16 strainCons119way,148 strainCons119wayViewalign,15 strainCons119wayViewphastcons,16 strainCons119wayViewphyloP,16 strainCons44way,13 strainCons44way,96 strainCons44wayViewalign,12 strainCons44wayViewphastcons,14 strainCons44wayViewphyloP,13 strainName119way,16 strainName44way,21 strainPhastCons119way,9 strainPhastCons44way,11 strainPhyloP119way,9 strainPhyloP44way,11 compared nextstrainParsimony,218 rapid,148 vaccines,448 comparing pbmShanghai,66 phyloGenes,602 comparison genscan,109 compgen.cshl.edu strainCons119way,2002 strainCons44way,1597 compiled ncbiGeneBGP,90 ncbiProducts,106 unipCov2AliSwissprot,322 unipCov2Chain,552 unipCov2DisulfBond,548 unipCov2Domain,547 unipCov2Interest,228 unipCov2LocCytopl,547 unipCov2LocExtra,547 unipCov2LocSignal,548 unipCov2LocTransMemb,548 unipCov2Modif,551 unipCov2Mut,548 unipCov2Other,548 unipCov2Repeat,546 unipCov2Struct,550 vaccines,412 complementary pyle,94 complete Q0_tracks,660 Q0_tracks,977 Q1_tracks,662 Q1_tracks,979 Q2_tracks,662 Q2_tracks,979 Q3_tracks,662 Q3_tracks,979 abEscape,747 bloomEscMabAvg,751 bloomEscMax,757 bloomEscSerumAvg,752 bloomEscTop,755 escape,754 galaxyEna,662 galaxyEna,979 galaxyEnaQ0Ba-1,658 galaxyEnaQ0Ba-1,975 galaxyEnaQ0Ba-1-1,658 galaxyEnaQ0Ba-1-1,975 galaxyEnaQ0Ba-1-1-11,658 galaxyEnaQ0Ba-1-1-11,975 galaxyEnaQ0Ba-1-17,658 galaxyEnaQ0Ba-1-17,975 galaxyEnaQ0Ba-2,658 galaxyEnaQ0Ba-2,975 galaxyEnaQ1Ay-4,658 galaxyEnaQ1Ay-4,975 galaxyEnaQ1Ay-4-2,658 galaxyEnaQ1Ay-4-2,975 galaxyEnaQ1Ay-4-2-2,658 galaxyEnaQ1Ay-4-2-2,975 galaxyEnaQ1Ay-43,658 galaxyEnaQ1Ay-43,975 galaxyEnaQ1Ba-1-17,658 galaxyEnaQ1Ba-1-17,975 galaxyEnaQ2Ay-120,658 galaxyEnaQ2Ay-120,975 galaxyEnaQ2Ay-122,658 galaxyEnaQ2Ay-122,975 galaxyEnaQ2Ay-4,658 galaxyEnaQ2Ay-4,975 galaxyEnaQ2Ay-5,658 galaxyEnaQ2Ay-5,975 galaxyEnaQ2Ay-6,658 galaxyEnaQ2Ay-6,975 galaxyEnaQ3Ay-4,658 galaxyEnaQ3Ay-4,975 galaxyEnaQ3Ay-5,658 galaxyEnaQ3Ay-5,975 galaxyEnaQ3Ay-9,658 galaxyEnaQ3Ay-9,975 galaxyEnaQ3B-1-1-7,658 galaxyEnaQ3B-1-1-7,975 galaxyEnaQ3B-1-617-2,658 galaxyEnaQ3B-1-617-2,975 genscan,213 mccoy,747 nextstrainSamples,800 phyloGenes,56 phyloGenes,65 rappuoli,754 sarsCov2Phylo,574 sarsCov2PhyloPub,599 swift,78 variantMuts,805 variantMuts,1014 complex rosettaMhc,154 complexes rosettaMhc,66 component gold,135 composed Q0_tracks,361 Q1_tracks,363 Q2_tracks,363 Q3_tracks,363 galaxyEna,363 galaxyEnaQ0Ba-1,359 galaxyEnaQ0Ba-1-1,359 galaxyEnaQ0Ba-1-1-11,359 galaxyEnaQ0Ba-1-17,359 galaxyEnaQ0Ba-2,359 galaxyEnaQ1Ay-4,359 galaxyEnaQ1Ay-4-2,359 galaxyEnaQ1Ay-4-2-2,359 galaxyEnaQ1Ay-43,359 galaxyEnaQ1Ba-1-17,359 galaxyEnaQ2Ay-120,359 galaxyEnaQ2Ay-122,359 galaxyEnaQ2Ay-4,359 galaxyEnaQ2Ay-5,359 galaxyEnaQ2Ay-6,359 galaxyEnaQ3Ay-4,359 galaxyEnaQ3Ay-5,359 galaxyEnaQ3Ay-9,359 galaxyEnaQ3B-1-1-7,359 galaxyEnaQ3B-1-617-2,359 nextstrainSamples,214 composite epitopes,13 pbmShanghai,114 composition multiz7way,337 strainCons119way,679 strainCons44way,627 compositional genscan,41 comprehensive abEscape,704 bloomEscMabAvg,708 bloomEscMax,714 bloomEscSerumAvg,709 bloomEscTop,712 escape,711 mccoy,704 pyle,289 rappuoli,711 recomb,183 computational Calu3_07hpi,212 ORFs,210 Vero6_05hpi,212 Vero6_24hpi,212 genscan,196 weizmanOrfs,218 computed PhyloCSF_smooth,473 PhyloCSF_smooth,543 PhyloCSFpower,488 PhyloCSFpower,558 nextstrainParsimony,101 pyle,164 strainCons119way,2040 strainCons44way,1635 computes nextstrainParsimony,327 strainCons119way,1789 strainCons44way,1384 computing strainCons119way,1989 strainCons44way,1584 comsuperfold pyle,205 conacc strainCons119way,2063 strainCons44way,1658 concentration abEscape,332 bloomEscMabAvg,336 bloomEscMax,342 bloomEscSerumAvg,337 bloomEscTop,340 escape,339 mccoy,332 rappuoli,339 concentrations pbmShanghai,208 concern spikeMuts,281 variantMuts,3 variantMuts,8 variantMuts,98 variantMuts,182 variantMuts,213 variantMuts,1021 variantMuts,1033 variantMuts,1054 concerning variantMuts,1073 conclusions kimIvtCov,65 condensed treangen,187 conditional augustusGene,118 conditioned recomb,260 conditions nextstrainSamples,681 confer resist,6 resist,26 resistPred,6 confidence gordon2,72 gordon2,146 microdel,32 configuration Calu3_07hpi,55 IgG_Z-score-_COVID-19_patients,79 IgM_Z-score-_COVID-19_patients,79 ORFs,53 Q0_tracks,273 Q1_tracks,275 Q2_tracks,275 Q3_tracks,275 Starr_Bloom,75 Starr_Bloom_bind,69 Vero6_05hpi,55 Vero6_24hpi,55 abEscape,271 addgene,109 artic,31 articV4,34 articV4_1,45 bloomEscMabAvg,275 bloomEscMax,281 bloomEscSerumAvg,276 bloomEscTop,279 bpmIggCovidSum,88 bpmIgmCovidSum,88 contacts,40 escape,278 galaxyEna,275 galaxyEnaQ0Ba-1,271 galaxyEnaQ0Ba-1-1,271 galaxyEnaQ0Ba-1-1-11,271 galaxyEnaQ0Ba-1-17,271 galaxyEnaQ0Ba-2,271 galaxyEnaQ1Ay-4,271 galaxyEnaQ1Ay-4-2,271 galaxyEnaQ1Ay-4-2-2,271 galaxyEnaQ1Ay-43,271 galaxyEnaQ1Ba-1-17,271 galaxyEnaQ2Ay-120,271 galaxyEnaQ2Ay-122,271 galaxyEnaQ2Ay-4,271 galaxyEnaQ2Ay-5,271 galaxyEnaQ2Ay-6,271 galaxyEnaQ3Ay-4,271 galaxyEnaQ3Ay-5,271 galaxyEnaQ3Ay-9,271 galaxyEnaQ3B-1-1-7,271 galaxyEnaQ3B-1-617-2,271 gc5BaseBw,60 gc5BaseBw,69 genscan,64 genscan,84 gordon2,84 kimIvtCov,89 kimNp,46 kimNp,103 kimRnaMod,47 kimTranscripts,38 mccoy,271 multiz7way,88 multiz7way,252 multiz7way,265 multiz7way,437 pbm,88 pbmShanghai,109 pdb,62 pond,90 poranHla1,83 poranHla2,83 publicAnnots,70 pyle,72 rapid,158 rappuoli,278 recomb,69 rnaStructRangan,46 strainCons119way,437 strainCons119way,601 strainCons119way,614 strainCons119way,787 strainCons44way,385 strainCons44way,549 strainCons44way,562 strainCons44way,735 swift,95 targets,112 transcriptome,30 treangen,105 unipCov2AliSwissprot,75 unipCov2AliSwissprot,306 unipCov2Chain,260 unipCov2Chain,536 unipCov2DisulfBond,256 unipCov2DisulfBond,532 unipCov2Domain,255 unipCov2Domain,531 unipCov2Interest,47 unipCov2Interest,212 unipCov2LocCytopl,255 unipCov2LocCytopl,531 unipCov2LocExtra,255 unipCov2LocExtra,531 unipCov2LocSignal,256 unipCov2LocSignal,532 unipCov2LocTransMemb,256 unipCov2LocTransMemb,532 unipCov2Modif,259 unipCov2Modif,535 unipCov2Mut,256 unipCov2Mut,532 unipCov2Other,256 unipCov2Other,532 unipCov2Repeat,254 unipCov2Repeat,530 unipCov2Struct,258 unipCov2Struct,534 vaccines,99 varskip,31 weizmanOrfs,61 configure kimNp,84 kimNp,90 variantMuts,16 configured gc5BaseBw,42 configuring abEscape,423 bloomEscMabAvg,427 bloomEscMax,433 bloomEscSerumAvg,428 bloomEscTop,431 escape,430 mccoy,423 rappuoli,430 confirmation primers,258 confirmed variantMuts,122 conflicting phyloGenes,566 conflicts unipCov2Chain,232 unipCov2DisulfBond,228 unipCov2Domain,227 unipCov2LocCytopl,227 unipCov2LocExtra,227 unipCov2LocSignal,228 unipCov2LocTransMemb,228 unipCov2Modif,231 unipCov2Mut,228 unipCov2Other,228 unipCov2Repeat,226 unipCov2Struct,230 conformation pyle,185 conjugated pbmShanghai,90 conjugates pbmShanghai,94 conjunction nextstrainGene,75 connected contacts,64 connor sarsCov2Phylo,976 sarsCov2PhyloPub,1096 variantMuts,1291 consecutive cas13Crispr,81 consensus Q0_tracks,220 Q0_tracks,929 Q0_tracks,935 Q1_tracks,222 Q1_tracks,931 Q1_tracks,937 Q2_tracks,222 Q2_tracks,931 Q2_tracks,937 Q3_tracks,222 Q3_tracks,931 Q3_tracks,937 galaxyEna,222 galaxyEna,931 galaxyEna,937 galaxyEnaQ0Ba-1,218 galaxyEnaQ0Ba-1,927 galaxyEnaQ0Ba-1,933 galaxyEnaQ0Ba-1-1,218 galaxyEnaQ0Ba-1-1,927 galaxyEnaQ0Ba-1-1,933 galaxyEnaQ0Ba-1-1-11,218 galaxyEnaQ0Ba-1-1-11,927 galaxyEnaQ0Ba-1-1-11,933 galaxyEnaQ0Ba-1-17,218 galaxyEnaQ0Ba-1-17,927 galaxyEnaQ0Ba-1-17,933 galaxyEnaQ0Ba-2,218 galaxyEnaQ0Ba-2,927 galaxyEnaQ0Ba-2,933 galaxyEnaQ1Ay-4,218 galaxyEnaQ1Ay-4,927 galaxyEnaQ1Ay-4,933 galaxyEnaQ1Ay-4-2,218 galaxyEnaQ1Ay-4-2,927 galaxyEnaQ1Ay-4-2,933 galaxyEnaQ1Ay-4-2-2,218 galaxyEnaQ1Ay-4-2-2,927 galaxyEnaQ1Ay-4-2-2,933 galaxyEnaQ1Ay-43,218 galaxyEnaQ1Ay-43,927 galaxyEnaQ1Ay-43,933 galaxyEnaQ1Ba-1-17,218 galaxyEnaQ1Ba-1-17,927 galaxyEnaQ1Ba-1-17,933 galaxyEnaQ2Ay-120,218 galaxyEnaQ2Ay-120,927 galaxyEnaQ2Ay-120,933 galaxyEnaQ2Ay-122,218 galaxyEnaQ2Ay-122,927 galaxyEnaQ2Ay-122,933 galaxyEnaQ2Ay-4,218 galaxyEnaQ2Ay-4,927 galaxyEnaQ2Ay-4,933 galaxyEnaQ2Ay-5,218 galaxyEnaQ2Ay-5,927 galaxyEnaQ2Ay-5,933 galaxyEnaQ2Ay-6,218 galaxyEnaQ2Ay-6,927 galaxyEnaQ2Ay-6,933 galaxyEnaQ3Ay-4,218 galaxyEnaQ3Ay-4,927 galaxyEnaQ3Ay-4,933 galaxyEnaQ3Ay-5,218 galaxyEnaQ3Ay-5,927 galaxyEnaQ3Ay-5,933 galaxyEnaQ3Ay-9,218 galaxyEnaQ3Ay-9,927 galaxyEnaQ3Ay-9,933 galaxyEnaQ3B-1-1-7,218 galaxyEnaQ3B-1-1-7,927 galaxyEnaQ3B-1-1-7,933 galaxyEnaQ3B-1-617-2,218 galaxyEnaQ3B-1-617-2,927 galaxyEnaQ3B-1-617-2,933 treangen,56 consequence problematicSites,353 strainCons119way,225 strainCons44way,173 conservation PhyloCSF_smooth,70 PhyloCSFpower,85 multiz7way,6 multiz7way,845 multiz7way,911 rnaStructRangan,112 strainCons119way,6 strainCons119way,34 strainCons119way,38 strainCons119way,116 strainCons119way,170 strainCons119way,213 strainCons119way,319 strainCons119way,1785 strainCons119way,1790 strainCons119way,1904 strainCons119way,1980 strainCons119way,1992 strainCons119way,2057 strainCons119way,2223 strainCons119way,2289 strainCons119wayViewalign,5 strainCons119wayViewphastcons,2 strainCons119wayViewphastcons,6 strainCons119wayViewphyloP,2 strainCons119wayViewphyloP,6 strainCons44way,6 strainCons44way,31 strainCons44way,35 strainCons44way,64 strainCons44way,118 strainCons44way,161 strainCons44way,267 strainCons44way,1380 strainCons44way,1385 strainCons44way,1499 strainCons44way,1575 strainCons44way,1587 strainCons44way,1652 strainCons44way,1818 strainCons44way,1884 strainCons44wayViewalign,5 strainCons44wayViewphastcons,3 strainCons44wayViewphastcons,7 strainCons44wayViewphyloP,2 strainCons44wayViewphyloP,6 strainPhastCons119way,6 strainPhastCons44way,8 strainPhyloP119way,6 strainPhyloP44way,8 conservation-scoring strainCons119way,1929 strainCons44way,1524 conservative PhyloCSF_smooth,47 PhyloCSFpower,62 conserved PhyloCSF_smooth,20 PhyloCSF_smooth,34 PhyloCSFgenes,6 PhyloCSFpower,35 PhyloCSFpower,49 cas13Crispr,34 multiz7way,1059 phyloGenes,6 phyloGenes,20 phyloGenes,78 phyloGenes,166 pond,164 pond,180 strainCons119way,152 strainCons119way,188 strainCons119way,258 strainCons119way,267 strainCons119way,332 strainCons119way,1846 strainCons119way,1873 strainCons119way,1949 strainCons119way,2064 strainCons119way,2067 strainCons119way,2095 strainCons119way,2114 strainCons119way,2437 strainCons44way,100 strainCons44way,136 strainCons44way,206 strainCons44way,215 strainCons44way,280 strainCons44way,1441 strainCons44way,1468 strainCons44way,1544 strainCons44way,1659 strainCons44way,1662 strainCons44way,1690 strainCons44way,1709 strainCons44way,2032 consider problematicSites,65 considered PhyloCSF_smooth,275 PhyloCSFpower,290 addgene,210 transcriptome,323 considering strainCons119way,2017 strainCons44way,1612 considers strainCons119way,196 strainCons44way,144 consistent galaxyEna,10 phyloGenes,37 consists primers,75 consortium Q0_tracks,1217 Q1_tracks,1219 Q2_tracks,1219 Q3_tracks,1219 galaxyEna,1219 galaxyEnaQ0Ba-1,1215 galaxyEnaQ0Ba-1-1,1215 galaxyEnaQ0Ba-1-1-11,1215 galaxyEnaQ0Ba-1-17,1215 galaxyEnaQ0Ba-2,1215 galaxyEnaQ1Ay-4,1215 galaxyEnaQ1Ay-4-2,1215 galaxyEnaQ1Ay-4-2-2,1215 galaxyEnaQ1Ay-43,1215 galaxyEnaQ1Ba-1-17,1215 galaxyEnaQ2Ay-120,1215 galaxyEnaQ2Ay-122,1215 galaxyEnaQ2Ay-4,1215 galaxyEnaQ2Ay-5,1215 galaxyEnaQ2Ay-6,1215 galaxyEnaQ3Ay-4,1215 galaxyEnaQ3Ay-5,1215 galaxyEnaQ3Ay-9,1215 galaxyEnaQ3B-1-1-7,1215 galaxyEnaQ3B-1-617-2,1215 unipCov2AliSwissprot,442 unipCov2Chain,671 unipCov2DisulfBond,667 unipCov2Domain,666 unipCov2Interest,325 unipCov2LocCytopl,666 unipCov2LocExtra,666 unipCov2LocSignal,667 unipCov2LocTransMemb,667 unipCov2Modif,670 unipCov2Mut,667 unipCov2Other,667 unipCov2Repeat,665 unipCov2Struct,669 constrained Entropy,11 constraint phyloGenes,538 constraints Starr_Bloom,269 Starr_Bloom_bind,263 pyle,173 constructed PhyloCSF_smooth,366 PhyloCSFpower,381 cpgIslandExt,322 cpgIslandExt,495 cpgIslandExtUnmasked,325 cpgIslandExtUnmasked,498 cpgIslandSuper,322 cpgIslandSuper,495 multiz7way,729 multiz7way,785 ncbiGeneBGP,27 ncbiProducts,30 strainCons119way,1489 strainCons119way,1657 strainCons44way,1159 strainCons44way,1252 construction cpgIslandExt,311 cpgIslandExtUnmasked,314 cpgIslandSuper,311 swift,35 contact contacts,5 contacts,22 contacts,44 contacts,56 contacts,77 contacts,236 nextstrainFreq,303 nextstrainFreq,345 nextstrainSamples,955 nextstrainSamples,971 pond,53 publicAnnots,65 publicAnnots,77 rosettaMhc,381 sarsCov2Phylo,905 sarsCov2Phylo,921 sarsCov2PhyloPub,1011 contacts contacts,3 contacts,189 contacts.bb contacts,371 contain Q0_tracks,783 Q1_tracks,785 Q2_tracks,785 Q3_tracks,785 galaxyEna,785 galaxyEnaQ0Ba-1,781 galaxyEnaQ0Ba-1-1,781 galaxyEnaQ0Ba-1-1-11,781 galaxyEnaQ0Ba-1-17,781 galaxyEnaQ0Ba-2,781 galaxyEnaQ1Ay-4,781 galaxyEnaQ1Ay-4-2,781 galaxyEnaQ1Ay-4-2-2,781 galaxyEnaQ1Ay-43,781 galaxyEnaQ1Ba-1-17,781 galaxyEnaQ2Ay-120,781 galaxyEnaQ2Ay-122,781 galaxyEnaQ2Ay-4,781 galaxyEnaQ2Ay-5,781 galaxyEnaQ2Ay-6,781 galaxyEnaQ3Ay-4,781 galaxyEnaQ3Ay-5,781 galaxyEnaQ3Ay-9,781 galaxyEnaQ3B-1-1-7,781 galaxyEnaQ3B-1-617-2,781 kimTranscripts,296 kimTranscripts,318 sarsCov2Phylo,737 variantMuts,118 contained addgene,18 containing Q0_tracks,286 Q1_tracks,288 Q2_tracks,288 Q3_tracks,288 addgene,29 galaxyEna,288 galaxyEnaQ0Ba-1,284 galaxyEnaQ0Ba-1-1,284 galaxyEnaQ0Ba-1-1-11,284 galaxyEnaQ0Ba-1-17,284 galaxyEnaQ0Ba-2,284 galaxyEnaQ1Ay-4,284 galaxyEnaQ1Ay-4-2,284 galaxyEnaQ1Ay-4-2-2,284 galaxyEnaQ1Ay-43,284 galaxyEnaQ1Ba-1-17,284 galaxyEnaQ2Ay-120,284 galaxyEnaQ2Ay-122,284 galaxyEnaQ2Ay-4,284 galaxyEnaQ2Ay-5,284 galaxyEnaQ2Ay-6,284 galaxyEnaQ3Ay-4,284 galaxyEnaQ3Ay-5,284 galaxyEnaQ3Ay-9,284 galaxyEnaQ3B-1-1-7,284 galaxyEnaQ3B-1-617-2,284 nextstrainSamples,557 strainCons119way,1684 strainCons44way,1279 variantMuts,787 contains Calu3_07hpi,40 ORFs,38 Starr_Bloom,18 Starr_Bloom,78 Starr_Bloom_bind,19 Starr_Bloom_bind,72 Vero6_05hpi,40 Vero6_24hpi,40 kimNp,61 nextstrainClade,102 pbmShanghai,112 pbmShanghai,122 rapid,70 rapid,88 sarsCov2PhyloPub,717 strainCons119way,2131 strainCons44way,1726 targets,173 treangen,108 weizmanOrfs,46 contaminated problematicSites,423 contamination problematicSites,40 problematicSites,306 content PhyloCSF_smooth,792 PhyloCSFpower,769 augustusGene,71 cas13Crispr,275 cpgIslandExt,263 cpgIslandExtUnmasked,266 cpgIslandSuper,263 gc5BaseBw,31 phyloGenes,596 context Q0_tracks,626 Q1_tracks,628 Q2_tracks,628 Q3_tracks,628 cd8escape,47 galaxyEna,628 galaxyEnaQ0Ba-1,624 galaxyEnaQ0Ba-1-1,624 galaxyEnaQ0Ba-1-1-11,624 galaxyEnaQ0Ba-1-17,624 galaxyEnaQ0Ba-2,624 galaxyEnaQ1Ay-4,624 galaxyEnaQ1Ay-4-2,624 galaxyEnaQ1Ay-4-2-2,624 galaxyEnaQ1Ay-43,624 galaxyEnaQ1Ba-1-17,624 galaxyEnaQ2Ay-120,624 galaxyEnaQ2Ay-122,624 galaxyEnaQ2Ay-4,624 galaxyEnaQ2Ay-5,624 galaxyEnaQ2Ay-6,624 galaxyEnaQ3Ay-4,624 galaxyEnaQ3Ay-5,624 galaxyEnaQ3Ay-9,624 galaxyEnaQ3B-1-1-7,624 galaxyEnaQ3B-1-617-2,624 rosettaMhc,163 contig gold,81 contigs gap,84 gold,73 gold,98 gold,115 continuous-time strainCons119way,1892 strainCons44way,1487 continuously nextstrainFreq,58 nextstrainParsimony,75 contrast strainCons119way,209 strainCons119way,375 strainCons44way,157 strainCons44way,323 contributed potPathoIndel,113 problematicSites,442 publicAnnots,6 sarsCov2PhyloPub,42 contributions nextstrainParsimony,429 nextstrainSamples,906 sarsCov2Phylo,842 variantMuts,1188 control addgene,41 crisprDet,81 pbmShanghai,51 pbmShanghai,97 primers,94 variantMuts,53 controls IgG_Z-score-_COVID-19_patients,43 IgM_Z-score-_COVID-19_patients,43 bpmIggCovidSum,52 bpmIgmCovidSum,52 cpgIslandExt,217 cpgIslandExtUnmasked,220 cpgIslandSuper,217 kimNp,96 nextstrainSamples,549 pbm,52 pbmShanghai,331 sarsCov2Phylo,541 sarsCov2PhyloPub,566 convalescent abEscape,898 bloomEscMabAvg,902 bloomEscMax,908 bloomEscSerumAvg,903 bloomEscTop,906 escape,905 mccoy,898 pbmShanghai,46 rappuoli,905 conventions Calu3_07hpi,53 IgG_Z-score-_COVID-19_patients,77 IgM_Z-score-_COVID-19_patients,77 ORFs,51 Q0_tracks,271 Q1_tracks,273 Q2_tracks,273 Q3_tracks,273 Starr_Bloom,73 Starr_Bloom_bind,67 Vero6_05hpi,53 Vero6_24hpi,53 abEscape,269 addgene,107 artic,29 articV4,32 articV4_1,43 bloomEscMabAvg,273 bloomEscMax,279 bloomEscSerumAvg,274 bloomEscTop,277 bpmIggCovidSum,86 bpmIgmCovidSum,86 contacts,38 escape,276 galaxyEna,273 galaxyEnaQ0Ba-1,269 galaxyEnaQ0Ba-1-1,269 galaxyEnaQ0Ba-1-1-11,269 galaxyEnaQ0Ba-1-17,269 galaxyEnaQ0Ba-2,269 galaxyEnaQ1Ay-4,269 galaxyEnaQ1Ay-4-2,269 galaxyEnaQ1Ay-4-2-2,269 galaxyEnaQ1Ay-43,269 galaxyEnaQ1Ba-1-17,269 galaxyEnaQ2Ay-120,269 galaxyEnaQ2Ay-122,269 galaxyEnaQ2Ay-4,269 galaxyEnaQ2Ay-5,269 galaxyEnaQ2Ay-6,269 galaxyEnaQ3Ay-4,269 galaxyEnaQ3Ay-5,269 galaxyEnaQ3Ay-9,269 galaxyEnaQ3B-1-1-7,269 galaxyEnaQ3B-1-617-2,269 genscan,62 genscan,70 gordon2,82 kimIvtCov,87 kimNp,44 kimRnaMod,45 kimTranscripts,36 mccoy,269 multiz7way,86 nextstrainSamples,302 pbm,86 pbmShanghai,107 pdb,60 pond,88 poranHla1,81 poranHla2,81 publicAnnots,68 pyle,70 rapid,156 rappuoli,276 resist,65 resistPred,99 rnaStructRangan,44 sarsCov2Phylo,307 sarsCov2PhyloPub,314 spikeMuts,179 strainCons119way,435 strainCons44way,383 swift,93 targets,110 transcriptome,28 treangen,103 unipCov2AliSwissprot,73 unipCov2Chain,258 unipCov2DisulfBond,254 unipCov2Domain,253 unipCov2Interest,45 unipCov2LocCytopl,253 unipCov2LocExtra,253 unipCov2LocSignal,254 unipCov2LocTransMemb,254 unipCov2Modif,257 unipCov2Mut,254 unipCov2Other,254 unipCov2Repeat,252 unipCov2Struct,256 vaccines,97 variantMuts,223 variantMuts,1097 varskip,29 weizmanOrfs,59 convert pyle,246 converted IgG_Z-score-_COVID-19_patients,208 IgG_Z-score-_COVID-19_patients,327 IgM_Z-score-_COVID-19_patients,208 IgM_Z-score-_COVID-19_patients,327 abEscape,633 addgene,216 artic,61 artic,110 articV4,61 articV4,110 articV4_1,72 articV4_1,123 bloomEscMabAvg,637 bloomEscMax,643 bloomEscSerumAvg,638 bloomEscTop,641 bpmIggCovidSum,217 bpmIggCovidSum,336 bpmIgmCovidSum,217 bpmIgmCovidSum,336 cas13Crispr,395 contacts,323 escape,640 icshape,36 kimRnaMod,157 kimTranscripts,374 mccoy,633 ncbiGeneBGP,79 ncbiProducts,95 pbm,217 pbm,336 pbmShanghai,364 pbmShanghai,453 phyloGenes,371 poranHla1,184 poranHla2,184 rapid,199 rapid,264 rappuoli,640 swift,137 swift,193 transcriptome,380 unipCov2AliSwissprot,311 unipCov2Chain,541 unipCov2DisulfBond,537 unipCov2Domain,536 unipCov2Interest,217 unipCov2LocCytopl,536 unipCov2LocExtra,536 unipCov2LocSignal,537 unipCov2LocTransMemb,537 unipCov2Modif,540 unipCov2Mut,537 unipCov2Other,537 unipCov2Repeat,535 unipCov2Struct,539 vaccines,106 varskip,67 varskip,116 converting resist,156 converts nextstrainSamples,848 coordinate variantMuts,731 variantMuts,752 variantMuts,772 coordinates abEscape,510 abEscape,539 abEscape,551 bloomEscMabAvg,514 bloomEscMabAvg,543 bloomEscMabAvg,555 bloomEscMax,520 bloomEscMax,549 bloomEscMax,561 bloomEscSerumAvg,515 bloomEscSerumAvg,544 bloomEscSerumAvg,556 bloomEscTop,518 bloomEscTop,547 bloomEscTop,559 escape,517 escape,546 escape,558 gordon2,90 mccoy,510 mccoy,539 mccoy,551 phyloGenes,110 phyloGenes,136 phyloGenes,201 phyloGenes,226 phyloGenes,249 phyloGenes,286 phyloGenes,313 pond,199 rappuoli,517 rappuoli,546 rappuoli,558 resist,159 targets,213 unipCov2AliSwissprot,29 unipCov2Chain,28 unipCov2DisulfBond,24 unipCov2Domain,23 unipCov2Interest,30 unipCov2LocCytopl,23 unipCov2LocExtra,23 unipCov2LocSignal,24 unipCov2LocTransMemb,24 unipCov2Modif,27 unipCov2Mut,24 unipCov2Other,24 unipCov2Repeat,22 unipCov2Struct,26 copied abEscape,630 abEscape,645 bloomEscMabAvg,634 bloomEscMabAvg,649 bloomEscMax,640 bloomEscMax,655 bloomEscSerumAvg,635 bloomEscSerumAvg,650 bloomEscTop,638 bloomEscTop,653 escape,637 escape,652 mccoy,630 mccoy,645 primers,31 rappuoli,637 rappuoli,652 coppens Q0_tracks,1243 Q0_tracks,1323 Q1_tracks,1245 Q1_tracks,1325 Q2_tracks,1245 Q2_tracks,1325 Q3_tracks,1245 Q3_tracks,1325 galaxyEna,1245 galaxyEna,1325 galaxyEnaQ0Ba-1,1241 galaxyEnaQ0Ba-1,1321 galaxyEnaQ0Ba-1-1,1241 galaxyEnaQ0Ba-1-1,1321 galaxyEnaQ0Ba-1-1-11,1241 galaxyEnaQ0Ba-1-1-11,1321 galaxyEnaQ0Ba-1-17,1241 galaxyEnaQ0Ba-1-17,1321 galaxyEnaQ0Ba-2,1241 galaxyEnaQ0Ba-2,1321 galaxyEnaQ1Ay-4,1241 galaxyEnaQ1Ay-4,1321 galaxyEnaQ1Ay-4-2,1241 galaxyEnaQ1Ay-4-2,1321 galaxyEnaQ1Ay-4-2-2,1241 galaxyEnaQ1Ay-4-2-2,1321 galaxyEnaQ1Ay-43,1241 galaxyEnaQ1Ay-43,1321 galaxyEnaQ1Ba-1-17,1241 galaxyEnaQ1Ba-1-17,1321 galaxyEnaQ2Ay-120,1241 galaxyEnaQ2Ay-120,1321 galaxyEnaQ2Ay-122,1241 galaxyEnaQ2Ay-122,1321 galaxyEnaQ2Ay-4,1241 galaxyEnaQ2Ay-4,1321 galaxyEnaQ2Ay-5,1241 galaxyEnaQ2Ay-5,1321 galaxyEnaQ2Ay-6,1241 galaxyEnaQ2Ay-6,1321 galaxyEnaQ3Ay-4,1241 galaxyEnaQ3Ay-4,1321 galaxyEnaQ3Ay-5,1241 galaxyEnaQ3Ay-5,1321 galaxyEnaQ3Ay-9,1241 galaxyEnaQ3Ay-9,1321 galaxyEnaQ3B-1-1-7,1241 galaxyEnaQ3B-1-1-7,1321 galaxyEnaQ3B-1-617-2,1241 galaxyEnaQ3B-1-617-2,1321 coraor Q0_tracks,1241 Q0_tracks,1307 Q1_tracks,1243 Q1_tracks,1309 Q2_tracks,1243 Q2_tracks,1309 Q3_tracks,1243 Q3_tracks,1309 galaxyEna,1243 galaxyEna,1309 galaxyEnaQ0Ba-1,1239 galaxyEnaQ0Ba-1,1305 galaxyEnaQ0Ba-1-1,1239 galaxyEnaQ0Ba-1-1,1305 galaxyEnaQ0Ba-1-1-11,1239 galaxyEnaQ0Ba-1-1-11,1305 galaxyEnaQ0Ba-1-17,1239 galaxyEnaQ0Ba-1-17,1305 galaxyEnaQ0Ba-2,1239 galaxyEnaQ0Ba-2,1305 galaxyEnaQ1Ay-4,1239 galaxyEnaQ1Ay-4,1305 galaxyEnaQ1Ay-4-2,1239 galaxyEnaQ1Ay-4-2,1305 galaxyEnaQ1Ay-4-2-2,1239 galaxyEnaQ1Ay-4-2-2,1305 galaxyEnaQ1Ay-43,1239 galaxyEnaQ1Ay-43,1305 galaxyEnaQ1Ba-1-17,1239 galaxyEnaQ1Ba-1-17,1305 galaxyEnaQ2Ay-120,1239 galaxyEnaQ2Ay-120,1305 galaxyEnaQ2Ay-122,1239 galaxyEnaQ2Ay-122,1305 galaxyEnaQ2Ay-4,1239 galaxyEnaQ2Ay-4,1305 galaxyEnaQ2Ay-5,1239 galaxyEnaQ2Ay-5,1305 galaxyEnaQ2Ay-6,1239 galaxyEnaQ2Ay-6,1305 galaxyEnaQ3Ay-4,1239 galaxyEnaQ3Ay-4,1305 galaxyEnaQ3Ay-5,1239 galaxyEnaQ3Ay-5,1305 galaxyEnaQ3Ay-9,1239 galaxyEnaQ3Ay-9,1305 galaxyEnaQ3B-1-1-7,1239 galaxyEnaQ3B-1-1-7,1305 galaxyEnaQ3B-1-617-2,1239 galaxyEnaQ3B-1-617-2,1305 corbett-detig problematicSites,571 problematicSites,600 sarsCov2Phylo,1082 sarsCov2Phylo,1111 sarsCov2PhyloPub,1202 sarsCov2PhyloPub,1234 core transcriptome,128 transcriptome,199 transcriptome,245 transcriptome,295 corona Q0_tracks,1226 Q1_tracks,1228 Q2_tracks,1228 Q3_tracks,1228 galaxyEna,1228 galaxyEnaQ0Ba-1,1224 galaxyEnaQ0Ba-1-1,1224 galaxyEnaQ0Ba-1-1-11,1224 galaxyEnaQ0Ba-1-17,1224 galaxyEnaQ0Ba-2,1224 galaxyEnaQ1Ay-4,1224 galaxyEnaQ1Ay-4-2,1224 galaxyEnaQ1Ay-4-2-2,1224 galaxyEnaQ1Ay-43,1224 galaxyEnaQ1Ba-1-17,1224 galaxyEnaQ2Ay-120,1224 galaxyEnaQ2Ay-122,1224 galaxyEnaQ2Ay-4,1224 galaxyEnaQ2Ay-5,1224 galaxyEnaQ2Ay-6,1224 galaxyEnaQ3Ay-4,1224 galaxyEnaQ3Ay-5,1224 galaxyEnaQ3Ay-9,1224 galaxyEnaQ3B-1-1-7,1224 galaxyEnaQ3B-1-617-2,1224 coronaviridae cas13Crispr,146 cas13Crispr,153 strainCons119way,78 coronavirus cas13Crispr,518 epitopes,77 epitopes,181 epitopes,244 epitopes,337 multiz7way,12 multiz7way,24 multiz7way,723 potPathoIndel,35 potPathoIndel,43 primers,265 rfam,30 rfam,144 rfam,178 rnaStructRangan,42 rosettaMhc,27 strainCons119way,70 strainCons119way,1421 swift,74 variantMuts,1382 coronavirus-specific rfam,26 coronavirus3d.org resistPred,10 resistPred,74 resistPred,173 resistPred,270 coronaviruses epitopes,230 potPathoIndel,48 potPathoIndel,80 potPathoIndel,111 potPathoIndel,120 potPathoIndel,157 potPathoIndel,229 correct PhyloCSF_smooth,361 PhyloCSFpower,376 nextstrainSamples,858 correlated nextstrainSamples,78 correlation recomb,247 corresponding problematicSites,125 strainCons119way,1866 strainCons44way,1461 corresponds Q0_tracks,337 Q1_tracks,339 Q2_tracks,339 Q3_tracks,339 galaxyEna,339 galaxyEnaQ0Ba-1,335 galaxyEnaQ0Ba-1-1,335 galaxyEnaQ0Ba-1-1-11,335 galaxyEnaQ0Ba-1-17,335 galaxyEnaQ0Ba-2,335 galaxyEnaQ1Ay-4,335 galaxyEnaQ1Ay-4-2,335 galaxyEnaQ1Ay-4-2-2,335 galaxyEnaQ1Ay-43,335 galaxyEnaQ1Ba-1-17,335 galaxyEnaQ2Ay-120,335 galaxyEnaQ2Ay-122,335 galaxyEnaQ2Ay-4,335 galaxyEnaQ2Ay-5,335 galaxyEnaQ2Ay-6,335 galaxyEnaQ3Ay-4,335 galaxyEnaQ3Ay-5,335 galaxyEnaQ3Ay-9,335 galaxyEnaQ3B-1-1-7,335 galaxyEnaQ3B-1-617-2,335 could PhyloCSF_smooth,302 PhyloCSFpower,317 Q0_tracks,703 Q1_tracks,705 Q2_tracks,705 Q3_tracks,705 contacts,257 galaxyEna,705 galaxyEnaQ0Ba-1,701 galaxyEnaQ0Ba-1-1,701 galaxyEnaQ0Ba-1-1-11,701 galaxyEnaQ0Ba-1-17,701 galaxyEnaQ0Ba-2,701 galaxyEnaQ1Ay-4,701 galaxyEnaQ1Ay-4-2,701 galaxyEnaQ1Ay-4-2-2,701 galaxyEnaQ1Ay-43,701 galaxyEnaQ1Ba-1-17,701 galaxyEnaQ2Ay-120,701 galaxyEnaQ2Ay-122,701 galaxyEnaQ2Ay-4,701 galaxyEnaQ2Ay-5,701 galaxyEnaQ2Ay-6,701 galaxyEnaQ3Ay-4,701 galaxyEnaQ3Ay-5,701 galaxyEnaQ3Ay-9,701 galaxyEnaQ3B-1-1-7,701 galaxyEnaQ3B-1-617-2,701 publicAnnots,30 count cpgIslandExt,334 cpgIslandExt,357 cpgIslandExtUnmasked,337 cpgIslandExtUnmasked,360 cpgIslandSuper,334 cpgIslandSuper,357 gordon2,171 multiz7way,694 nextstrainParsimony,222 problematicSites,287 resistPred,12 strainCons119way,1043 strainCons44way,991 countermeasures epitopes,170 countries Q0_tracks,685 Q1_tracks,687 Q2_tracks,687 Q3_tracks,687 galaxyEna,687 galaxyEnaQ0Ba-1,683 galaxyEnaQ0Ba-1-1,683 galaxyEnaQ0Ba-1-1-11,683 galaxyEnaQ0Ba-1-17,683 galaxyEnaQ0Ba-2,683 galaxyEnaQ1Ay-4,683 galaxyEnaQ1Ay-4-2,683 galaxyEnaQ1Ay-4-2-2,683 galaxyEnaQ1Ay-43,683 galaxyEnaQ1Ba-1-17,683 galaxyEnaQ2Ay-120,683 galaxyEnaQ2Ay-122,683 galaxyEnaQ2Ay-4,683 galaxyEnaQ2Ay-5,683 galaxyEnaQ2Ay-6,683 galaxyEnaQ3Ay-4,683 galaxyEnaQ3Ay-5,683 galaxyEnaQ3Ay-9,683 galaxyEnaQ3B-1-1-7,683 galaxyEnaQ3B-1-617-2,683 variantMuts,149 variantMuts,345 variantMuts,361 country Q0_tracks,612 Q0_tracks,681 Q1_tracks,614 Q1_tracks,683 Q2_tracks,614 Q2_tracks,683 Q3_tracks,614 Q3_tracks,683 galaxyEna,614 galaxyEna,683 galaxyEnaQ0Ba-1,610 galaxyEnaQ0Ba-1,679 galaxyEnaQ0Ba-1-1,610 galaxyEnaQ0Ba-1-1,679 galaxyEnaQ0Ba-1-1-11,610 galaxyEnaQ0Ba-1-1-11,679 galaxyEnaQ0Ba-1-17,610 galaxyEnaQ0Ba-1-17,679 galaxyEnaQ0Ba-2,610 galaxyEnaQ0Ba-2,679 galaxyEnaQ1Ay-4,610 galaxyEnaQ1Ay-4,679 galaxyEnaQ1Ay-4-2,610 galaxyEnaQ1Ay-4-2,679 galaxyEnaQ1Ay-4-2-2,610 galaxyEnaQ1Ay-4-2-2,679 galaxyEnaQ1Ay-43,610 galaxyEnaQ1Ay-43,679 galaxyEnaQ1Ba-1-17,610 galaxyEnaQ1Ba-1-17,679 galaxyEnaQ2Ay-120,610 galaxyEnaQ2Ay-120,679 galaxyEnaQ2Ay-122,610 galaxyEnaQ2Ay-122,679 galaxyEnaQ2Ay-4,610 galaxyEnaQ2Ay-4,679 galaxyEnaQ2Ay-5,610 galaxyEnaQ2Ay-5,679 galaxyEnaQ2Ay-6,610 galaxyEnaQ2Ay-6,679 galaxyEnaQ3Ay-4,610 galaxyEnaQ3Ay-4,679 galaxyEnaQ3Ay-5,610 galaxyEnaQ3Ay-5,679 galaxyEnaQ3Ay-9,610 galaxyEnaQ3Ay-9,679 galaxyEnaQ3B-1-1-7,610 galaxyEnaQ3B-1-1-7,679 galaxyEnaQ3B-1-617-2,610 galaxyEnaQ3B-1-617-2,679 problematicSites,202 counts gold,142 sarsCov2PhyloPub,820 cov multiz7way,2 multiz7way,709 multiz7way,711 multiz7way,717 multiz7way,720 strainCons119way,1284 strainCons119way,1289 strainCons119way,1291 strainCons119way,1298 strainCons119way,1301 strainCons119way,1305 strainCons119way,1308 strainCons119way,1319 strainCons119way,1337 strainCons119way,1339 strainCons119way,1342 strainCons119way,1345 strainCons119way,1347 strainCons119way,1351 strainCons119way,1354 strainCons119way,1360 strainCons119way,1363 strainCons119way,1366 strainCons119way,1369 strainCons119way,1372 strainCons119way,1384 strainCons119way,1388 strainCons119way,1392 strainCons119way,1396 strainCons119way,1399 strainCons119way,1404 strainCons119way,1407 strainCons119way,1410 strainCons119way,1424 strainCons119way,1428 strainCons119way,1436 strainCons119way,1440 strainCons119way,1444 strainCons119way,1447 strainCons119way,1452 strainCons119way,1459 strainCons119way,1462 strainCons119way,1468 strainCons119way,1477 strainCons44way,1000 strainCons44way,1004 strainCons44way,1008 strainCons44way,1012 strainCons44way,1015 strainCons44way,1022 strainCons44way,1025 strainCons44way,1030 strainCons44way,1035 strainCons44way,1038 strainCons44way,1049 strainCons44way,1052 strainCons44way,1056 strainCons44way,1060 strainCons44way,1063 strainCons44way,1071 strainCons44way,1074 strainCons44way,1081 strainCons44way,1086 strainCons44way,1089 strainCons44way,1093 strainCons44way,1099 strainCons44way,1103 strainCons44way,1113 strainCons44way,1117 strainCons44way,1121 strainCons44way,1125 strainCons44way,1129 strainCons44way,1133 strainCons44way,1136 strainCons44way,1139 strainCons44way,1143 strainCons44way,1149 strainCons44way,1153 strainName44way,2 cov-2 pyle,232 transcriptome,276 cov-lineages.org variantAaMuts_B_1_1_529,13 cov2-2050 COV2-2050Max,2 COV2-2050Max,9 COV2-2050Total,2 COV2-2050Total,9 cov2-2082 COV2-2082Max,2 COV2-2082Max,9 COV2-2082Total,2 COV2-2082Total,9 cov2-2094 COV2-2094Max,2 COV2-2094Max,9 COV2-2094Total,2 COV2-2094Total,9 cov2-2096 COV2-2096Max,2 COV2-2096Max,9 COV2-2096Total,2 COV2-2096Total,9 cov2-2165 COV2-2165Max,2 COV2-2165Max,9 COV2-2165Total,2 COV2-2165Total,9 cov2-2479 COV2-2479Max,2 COV2-2479Max,9 COV2-2479Total,2 COV2-2479Total,9 cov2-2499 COV2-2499Max,2 COV2-2499Max,9 COV2-2499Total,2 COV2-2499Total,9 cov2-2677 COV2-2677Max,2 COV2-2677Max,9 COV2-2677Total,2 COV2-2677Total,9 cov2-2832 COV2-2832Max,2 COV2-2832Max,9 COV2-2832Total,2 COV2-2832Total,9 cov229e multiz7way,777 cov2annots publicAnnots,9 publicAnnots,27 covariance rfam,52 covariants spikeMuts,387 covariants.org spikeMuts,108 cover poranHla1,24 poranHla2,24 strainCons119way,84 coverage kimIvtCov,2 kimIvtCov,4 kimIvtCov,22 kimIvtCov,57 kimIvtCov,91 microdel,87 poranHla1,60 poranHla2,60 problematicSites,374 rapid,147 rfam,167 unipCov2AliSwissprot,168 unipCov2Chain,421 unipCov2DisulfBond,417 unipCov2Domain,416 unipCov2Interest,97 unipCov2LocCytopl,416 unipCov2LocExtra,416 unipCov2LocSignal,417 unipCov2LocTransMemb,417 unipCov2Modif,420 unipCov2Mut,417 unipCov2Other,417 unipCov2Repeat,415 unipCov2Struct,419 covered gap,24 gold,26 covid bpmIggCovidSum,16 bpmIgmCovidSum,16 igg_COVID_11,1 igg_COVID_11,3 igg_COVID_12,1 igg_COVID_12,3 igg_COVID_13,1 igg_COVID_13,3 igg_COVID_14,1 igg_COVID_14,3 igg_COVID_15,1 igg_COVID_15,3 igg_COVID_16,1 igg_COVID_16,3 igg_COVID_17,1 igg_COVID_17,3 igg_COVID_18,1 igg_COVID_18,3 igg_COVID_19,1 igg_COVID_19,3 igg_COVID_401,1 igg_COVID_401,3 igg_COVID_4021,1 igg_COVID_4021,3 igg_COVID_4022,1 igg_COVID_4022,3 igg_COVID_404,1 igg_COVID_404,3 igg_COVID_405,1 igg_COVID_405,3 igg_COVID_406,1 igg_COVID_406,3 igg_COVID_407,1 igg_COVID_407,3 igg_COVID_408,1 igg_COVID_408,3 igg_COVID_409,1 igg_COVID_409,3 igg_COVID_410,1 igg_COVID_410,3 igg_COVID_414,1 igg_COVID_414,3 igg_COVID_415,1 igg_COVID_415,3 igg_COVID_416,1 igg_COVID_416,3 igg_COVID_419,1 igg_COVID_419,3 igg_COVID_429,1 igg_COVID_429,3 igg_COVID_432,1 igg_COVID_432,3 igg_COVID_436,1 igg_COVID_436,3 igg_COVID_4371,1 igg_COVID_4371,3 igg_COVID_4372,1 igg_COVID_4372,3 igg_COVID_501,1 igg_COVID_501,3 igg_COVID_502,1 igg_COVID_502,3 igg_COVID_508,1 igg_COVID_508,3 igg_COVID_509,1 igg_COVID_509,3 igg_COVID_510,1 igg_COVID_510,3 igg_COVID_520,1 igg_COVID_520,3 igg_COVID_522,1 igg_COVID_522,3 igg_COVID_5222,1 igg_COVID_5222,3 igg_COVID_523,1 igg_COVID_523,3 igg_COVID_526,1 igg_COVID_526,3 igg_COVID_527,1 igg_COVID_527,3 igg_COVID_528,1 igg_COVID_528,3 igg_COVID_529,1 igg_COVID_529,3 igg_COVID_530,1 igg_COVID_530,3 igg_COVID_531,1 igg_COVID_531,3 igg_COVID_532,1 igg_COVID_532,3 igg_COVID_533,1 igg_COVID_533,3 igg_COVID_5333,1 igg_COVID_5333,3 igg_COVID_534,1 igg_COVID_534,3 igg_COVID_535,1 igg_COVID_535,3 igg_COVID_605,1 igg_COVID_605,3 igg_COVID_607,1 igg_COVID_607,3 igg_COVID_608,1 igg_COVID_608,3 igg_COVID_610,1 igg_COVID_610,3 igg_COVID_727,1 igg_COVID_727,3 igg_COVID_730,1 igg_COVID_730,3 igg_COVID_744,1 igg_COVID_744,3 igm_COVID_11,1 igm_COVID_11,3 igm_COVID_12,1 igm_COVID_12,3 igm_COVID_13,1 igm_COVID_13,3 igm_COVID_14,1 igm_COVID_14,3 igm_COVID_15,1 igm_COVID_15,3 igm_COVID_16,1 igm_COVID_16,3 igm_COVID_17,1 igm_COVID_17,3 igm_COVID_18,1 igm_COVID_18,3 igm_COVID_19,1 igm_COVID_19,3 igm_COVID_401,1 igm_COVID_401,3 igm_COVID_4021,1 igm_COVID_4021,3 igm_COVID_4022,1 igm_COVID_4022,3 igm_COVID_404,1 igm_COVID_404,3 igm_COVID_405,1 igm_COVID_405,3 igm_COVID_406,1 igm_COVID_406,3 igm_COVID_407,1 igm_COVID_407,3 igm_COVID_408,1 igm_COVID_408,3 igm_COVID_409,1 igm_COVID_409,3 igm_COVID_410,1 igm_COVID_410,3 igm_COVID_414,1 igm_COVID_414,3 igm_COVID_415,1 igm_COVID_415,3 igm_COVID_416,1 igm_COVID_416,3 igm_COVID_419,1 igm_COVID_419,3 igm_COVID_429,1 igm_COVID_429,3 igm_COVID_432,1 igm_COVID_432,3 igm_COVID_436,1 igm_COVID_436,3 igm_COVID_4371,1 igm_COVID_4371,3 igm_COVID_4372,1 igm_COVID_4372,3 igm_COVID_501,1 igm_COVID_501,3 igm_COVID_502,1 igm_COVID_502,3 igm_COVID_508,1 igm_COVID_508,3 igm_COVID_509,1 igm_COVID_509,3 igm_COVID_510,1 igm_COVID_510,3 igm_COVID_520,1 igm_COVID_520,3 igm_COVID_522,1 igm_COVID_522,3 igm_COVID_5222,1 igm_COVID_5222,3 igm_COVID_523,1 igm_COVID_523,3 igm_COVID_526,1 igm_COVID_526,3 igm_COVID_527,1 igm_COVID_527,3 igm_COVID_528,1 igm_COVID_528,3 igm_COVID_529,1 igm_COVID_529,3 igm_COVID_530,1 igm_COVID_530,3 igm_COVID_531,1 igm_COVID_531,3 igm_COVID_532,1 igm_COVID_532,3 igm_COVID_533,1 igm_COVID_533,3 igm_COVID_5333,1 igm_COVID_5333,3 igm_COVID_534,1 igm_COVID_534,3 igm_COVID_535,1 igm_COVID_535,3 igm_COVID_605,1 igm_COVID_605,3 igm_COVID_607,1 igm_COVID_607,3 igm_COVID_608,1 igm_COVID_608,3 igm_COVID_610,1 igm_COVID_610,3 igm_COVID_727,1 igm_COVID_727,3 igm_COVID_730,1 igm_COVID_730,3 igm_COVID_744,1 igm_COVID_744,3 pbmShanghai,304 resistPred,35 vaccines,2 covid-19 IgG_Z-score-_COVID-19_patients,4 IgG_Z-score-_COVID-19_patients,11 IgG_Z-score-_COVID-19_patients,36 IgG_Z-score-_COVID-19_patients,432 IgM_Z-score-_COVID-19_patients,4 IgM_Z-score-_COVID-19_patients,11 IgM_Z-score-_COVID-19_patients,36 IgM_Z-score-_COVID-19_patients,432 PhyloCSF_smooth,799 PhyloCSFpower,776 Q0_tracks,303 Q0_tracks,1214 Q1_tracks,305 Q1_tracks,1216 Q2_tracks,305 Q2_tracks,1216 Q3_tracks,305 Q3_tracks,1216 abEscape,852 abEscape,897 bloomEscMabAvg,856 bloomEscMabAvg,901 bloomEscMax,862 bloomEscMax,907 bloomEscSerumAvg,857 bloomEscSerumAvg,902 bloomEscTop,860 bloomEscTop,905 bpmIggCovidSum,45 bpmIggCovidSum,441 bpmIgmCovidSum,45 bpmIgmCovidSum,441 cd8escape,166 escape,859 escape,904 galaxyEna,305 galaxyEna,1216 galaxyEnaQ0Ba-1,301 galaxyEnaQ0Ba-1,1212 galaxyEnaQ0Ba-1-1,301 galaxyEnaQ0Ba-1-1,1212 galaxyEnaQ0Ba-1-1-11,301 galaxyEnaQ0Ba-1-1-11,1212 galaxyEnaQ0Ba-1-17,301 galaxyEnaQ0Ba-1-17,1212 galaxyEnaQ0Ba-2,301 galaxyEnaQ0Ba-2,1212 galaxyEnaQ1Ay-4,301 galaxyEnaQ1Ay-4,1212 galaxyEnaQ1Ay-4-2,301 galaxyEnaQ1Ay-4-2,1212 galaxyEnaQ1Ay-4-2-2,301 galaxyEnaQ1Ay-4-2-2,1212 galaxyEnaQ1Ay-43,301 galaxyEnaQ1Ay-43,1212 galaxyEnaQ1Ba-1-17,301 galaxyEnaQ1Ba-1-17,1212 galaxyEnaQ2Ay-120,301 galaxyEnaQ2Ay-120,1212 galaxyEnaQ2Ay-122,301 galaxyEnaQ2Ay-122,1212 galaxyEnaQ2Ay-4,301 galaxyEnaQ2Ay-4,1212 galaxyEnaQ2Ay-5,301 galaxyEnaQ2Ay-5,1212 galaxyEnaQ2Ay-6,301 galaxyEnaQ2Ay-6,1212 galaxyEnaQ3Ay-4,301 galaxyEnaQ3Ay-4,1212 galaxyEnaQ3Ay-5,301 galaxyEnaQ3Ay-5,1212 galaxyEnaQ3Ay-9,301 galaxyEnaQ3Ay-9,1212 galaxyEnaQ3B-1-1-7,301 galaxyEnaQ3B-1-1-7,1212 galaxyEnaQ3B-1-617-2,301 galaxyEnaQ3B-1-617-2,1212 mccoy,852 mccoy,897 pbm,45 pbm,441 pbmShanghai,47 pbmShanghai,526 phyloGenes,598 pond,238 pond,248 primers,54 rappuoli,859 rappuoli,904 rfam,183 rosettaMhc,29 spikeMuts,35 targets,28 targets,91 targets,241 vaccines,470 vaccines,547 vaccines,600 covs strainCons119way,3 strainCons44way,3 cp strainCons44way,1026 cpg cpgIslandExt,1 cpgIslandExt,3 cpgIslandExt,15 cpgIslandExt,26 cpgIslandExt,55 cpgIslandExt,147 cpgIslandExt,176 cpgIslandExt,225 cpgIslandExt,316 cpgIslandExt,319 cpgIslandExt,333 cpgIslandExt,346 cpgIslandExt,351 cpgIslandExt,356 cpgIslandExt,367 cpgIslandExt,382 cpgIslandExt,385 cpgIslandExt,506 cpgIslandExt,608 cpgIslandExtUnmasked,2 cpgIslandExtUnmasked,3 cpgIslandExtUnmasked,18 cpgIslandExtUnmasked,29 cpgIslandExtUnmasked,58 cpgIslandExtUnmasked,150 cpgIslandExtUnmasked,179 cpgIslandExtUnmasked,228 cpgIslandExtUnmasked,319 cpgIslandExtUnmasked,322 cpgIslandExtUnmasked,336 cpgIslandExtUnmasked,349 cpgIslandExtUnmasked,354 cpgIslandExtUnmasked,359 cpgIslandExtUnmasked,370 cpgIslandExtUnmasked,385 cpgIslandExtUnmasked,388 cpgIslandExtUnmasked,509 cpgIslandExtUnmasked,611 cpgIslandSuper,1 cpgIslandSuper,3 cpgIslandSuper,15 cpgIslandSuper,26 cpgIslandSuper,55 cpgIslandSuper,147 cpgIslandSuper,176 cpgIslandSuper,225 cpgIslandSuper,316 cpgIslandSuper,319 cpgIslandSuper,333 cpgIslandSuper,346 cpgIslandSuper,351 cpgIslandSuper,356 cpgIslandSuper,367 cpgIslandSuper,382 cpgIslandSuper,385 cpgIslandSuper,506 cpgIslandSuper,608 cpg_lh cpgIslandExt,418 cpgIslandExt,558 cpgIslandExt,568 cpgIslandExt,580 cpgIslandExtUnmasked,421 cpgIslandExtUnmasked,561 cpgIslandExtUnmasked,571 cpgIslandExtUnmasked,583 cpgIslandSuper,418 cpgIslandSuper,558 cpgIslandSuper,568 cpgIslandSuper,580 cpg_lh.err cpgIslandExt,423 cpgIslandExtUnmasked,426 cpgIslandSuper,423 cpgisland.bed cpgIslandExt,489 cpgIslandExtUnmasked,492 cpgIslandSuper,489 cpgislandext cpgIslandExt,566 cpgIslandExtUnmasked,569 cpgIslandSuper,566 cpgs cpgIslandExt,115 cpgIslandExt,152 cpgIslandExtUnmasked,118 cpgIslandExtUnmasked,155 cpgIslandSuper,115 cpgIslandSuper,152 craig resist,56 resist,152 resistPred,244 crawford Starr_Bloom,246 Starr_Bloom_bind,240 abEscape,694 abEscape,743 bloomEscMabAvg,698 bloomEscMabAvg,747 bloomEscMax,704 bloomEscMax,753 bloomEscSerumAvg,699 bloomEscSerumAvg,748 bloomEscTop,702 bloomEscTop,751 escape,701 escape,750 mccoy,694 mccoy,743 rappuoli,701 rappuoli,750 create IgG_Z-score-_COVID-19_patients,221 IgM_Z-score-_COVID-19_patients,221 addgene,233 bpmIggCovidSum,230 bpmIgmCovidSum,230 pbm,230 pbmShanghai,377 transcriptome,268 treangen,163 windowmaskerSdust,48 created addgene,188 contacts,398 multiz7way,817 ncbiGeneBGP,167 ncbiProducts,183 primers,35 rnaStructRangan,83 strainCons119way,2195 strainCons44way,1790 unipCov2AliSwissprot,404 unipCov2Chain,634 unipCov2DisulfBond,630 unipCov2Domain,629 unipCov2Interest,287 unipCov2LocCytopl,629 unipCov2LocExtra,629 unipCov2LocSignal,630 unipCov2LocTransMemb,630 unipCov2Modif,633 unipCov2Mut,630 unipCov2Other,630 unipCov2Repeat,628 unipCov2Struct,632 creating variantMuts,1219 credits PhyloCSF_smooth,670 PhyloCSFpower,634 Q0_tracks,1105 Q1_tracks,1107 Q2_tracks,1107 Q3_tracks,1107 addgene,237 augustusGene,247 cas13Crispr,468 contacts,396 cpgIslandExt,584 cpgIslandExtUnmasked,587 cpgIslandSuper,584 crisprDet,142 epitopes,302 galaxyEna,1107 galaxyEnaQ0Ba-1,1103 galaxyEnaQ0Ba-1-1,1103 galaxyEnaQ0Ba-1-1-11,1103 galaxyEnaQ0Ba-1-17,1103 galaxyEnaQ0Ba-2,1103 galaxyEnaQ1Ay-4,1103 galaxyEnaQ1Ay-4-2,1103 galaxyEnaQ1Ay-4-2-2,1103 galaxyEnaQ1Ay-43,1103 galaxyEnaQ1Ba-1-17,1103 galaxyEnaQ2Ay-120,1103 galaxyEnaQ2Ay-122,1103 galaxyEnaQ2Ay-4,1103 galaxyEnaQ2Ay-5,1103 galaxyEnaQ2Ay-6,1103 galaxyEnaQ3Ay-4,1103 galaxyEnaQ3Ay-5,1103 galaxyEnaQ3Ay-9,1103 galaxyEnaQ3B-1-1-7,1103 galaxyEnaQ3B-1-617-2,1103 gc5BaseBw,71 genscan,169 kimNp,105 kimRnaMod,230 kimTranscripts,448 microdel,187 multiz7way,813 ncbiGeneBGP,163 ncbiProducts,179 nextstrainClade,218 nextstrainFreq,351 nextstrainGene,167 nextstrainParsimony,404 nextstrainSamples,709 nextstrainSamples,881 phyloGenes,467 primers,355 recomb,312 resist,140 resistPred,232 rfam,103 rnaStructRangan,79 rosettaMhc,362 sarsCov2Phylo,817 sarsCov2PhyloPub,865 sarsCov2PhyloPub,900 simpleRepeat,66 spikeMuts,355 strainCons119way,2191 strainCons44way,1786 transcriptome,454 ucscToINSDC,42 ucscToRefSeq,36 unipCov2AliSwissprot,400 unipCov2Chain,630 unipCov2DisulfBond,626 unipCov2Domain,625 unipCov2Interest,283 unipCov2LocCytopl,625 unipCov2LocExtra,625 unipCov2LocSignal,626 unipCov2LocTransMemb,626 unipCov2Modif,629 unipCov2Mut,626 unipCov2Other,626 unipCov2Repeat,624 unipCov2Struct,628 vaccines,613 variantMuts,1163 crispr cas13Crispr,2 cas13Crispr,4 cas13Crispr,510 crisprDet,1 crisprDet,3 crisprDet,16 criteria cpgIslandExt,261 cpgIslandExtUnmasked,264 cpgIslandSuper,261 gordon2,150 treangen,149 cross vaccines,595 crowd-sourced publicAnnots,1 publicAnnots,3 crrna cas13Crispr,77 cas13Crispr,106 cas13Crispr,143 cas13Crispr,159 cas13Crispr,188 cas13Crispr,231 cas13Crispr,256 cas13Crispr,278 cas13Crispr,311 crrnas cas13Crispr,17 cas13Crispr,48 cas13Crispr,53 cas13Crispr,88 cas13Crispr,92 cas13Crispr,197 cas13Crispr,306 cas13Crispr,327 cas13Crispr,338 cruz epitopes,316 strainCons44way,2269 crystal contacts,175 resistPred,68 cs cpgIslandExt,63 cpgIslandExt,101 cpgIslandExt,296 cpgIslandExtUnmasked,66 cpgIslandExtUnmasked,104 cpgIslandExtUnmasked,299 cpgIslandSuper,63 cpgIslandSuper,101 cpgIslandSuper,296 variantMuts,910 csf PhyloCSF_smooth,61 PhyloCSFpower,76 csv pond,193 ctl cd8escape,21 cd8escape,54 ctrl igg_Ctrl_LC168,1 igg_Ctrl_LC168,3 igg_Ctrl_LC169,1 igg_Ctrl_LC169,3 igg_Ctrl_LC171,1 igg_Ctrl_LC171,3 igg_Ctrl_LC174,1 igg_Ctrl_LC174,3 igg_Ctrl_LC175,1 igg_Ctrl_LC175,3 igg_Ctrl_LC177,1 igg_Ctrl_LC177,3 igg_Ctrl_LC180,1 igg_Ctrl_LC180,3 igg_Ctrl_LC181,1 igg_Ctrl_LC181,3 igg_Ctrl_LC182,1 igg_Ctrl_LC182,3 igg_Ctrl_NC63,1 igg_Ctrl_NC63,3 igg_Ctrl_NC64,1 igg_Ctrl_NC64,3 igg_Ctrl_NC65,1 igg_Ctrl_NC65,3 igg_Ctrl_NC66,1 igg_Ctrl_NC66,3 igg_Ctrl_NC67,1 igg_Ctrl_NC67,3 igg_Ctrl_NC95,1 igg_Ctrl_NC95,3 igg_Ctrl_NC96,1 igg_Ctrl_NC96,3 igg_Ctrl_NC97,1 igg_Ctrl_NC97,3 igg_Ctrl_NC98,1 igg_Ctrl_NC98,3 igm_Ctrl_LC168,1 igm_Ctrl_LC168,3 igm_Ctrl_LC169,1 igm_Ctrl_LC169,3 igm_Ctrl_LC171,1 igm_Ctrl_LC171,3 igm_Ctrl_LC174,1 igm_Ctrl_LC174,3 igm_Ctrl_LC175,1 igm_Ctrl_LC175,3 igm_Ctrl_LC177,1 igm_Ctrl_LC177,3 igm_Ctrl_LC180,1 igm_Ctrl_LC180,3 igm_Ctrl_LC181,1 igm_Ctrl_LC181,3 igm_Ctrl_LC182,1 igm_Ctrl_LC182,3 igm_Ctrl_NC63,1 igm_Ctrl_NC63,3 igm_Ctrl_NC64,1 igm_Ctrl_NC64,3 igm_Ctrl_NC65,1 igm_Ctrl_NC65,3 igm_Ctrl_NC66,1 igm_Ctrl_NC66,3 igm_Ctrl_NC67,1 igm_Ctrl_NC67,3 igm_Ctrl_NC95,1 igm_Ctrl_NC95,3 igm_Ctrl_NC96,1 igm_Ctrl_NC96,3 igm_Ctrl_NC97,1 igm_Ctrl_NC97,3 igm_Ctrl_NC98,1 igm_Ctrl_NC98,3 culex augustusGene,220 curated PhyloCSFgenes,5 phyloGenes,5 phyloGenes,16 rfam,105 unipCov2AliSwissprot,63 unipCov2Chain,33 unipCov2DisulfBond,29 unipCov2Domain,28 unipCov2Interest,35 unipCov2LocCytopl,28 unipCov2LocExtra,28 unipCov2LocSignal,29 unipCov2LocTransMemb,29 unipCov2Modif,32 unipCov2Mut,29 unipCov2Other,29 unipCov2Repeat,27 unipCov2Struct,31 current PhyloCSF_smooth,94 PhyloCSFpower,109 Q0_tracks,7 Q0_tracks,13 Q0_tracks,316 Q0_tracks,334 Q0_tracks,708 Q0_tracks,1079 Q1_tracks,318 Q1_tracks,336 Q1_tracks,710 Q1_tracks,1081 Q2_tracks,318 Q2_tracks,336 Q2_tracks,710 Q2_tracks,1081 Q3_tracks,318 Q3_tracks,336 Q3_tracks,710 Q3_tracks,1081 abEscape,425 bloomEscMabAvg,429 bloomEscMax,435 bloomEscSerumAvg,430 bloomEscTop,433 escape,432 galaxyEna,318 galaxyEna,336 galaxyEna,710 galaxyEna,1081 galaxyEnaQ0Ba-1,314 galaxyEnaQ0Ba-1,332 galaxyEnaQ0Ba-1,706 galaxyEnaQ0Ba-1,1077 galaxyEnaQ0Ba-1-1,314 galaxyEnaQ0Ba-1-1,332 galaxyEnaQ0Ba-1-1,706 galaxyEnaQ0Ba-1-1,1077 galaxyEnaQ0Ba-1-1-11,314 galaxyEnaQ0Ba-1-1-11,332 galaxyEnaQ0Ba-1-1-11,706 galaxyEnaQ0Ba-1-1-11,1077 galaxyEnaQ0Ba-1-17,314 galaxyEnaQ0Ba-1-17,332 galaxyEnaQ0Ba-1-17,706 galaxyEnaQ0Ba-1-17,1077 galaxyEnaQ0Ba-2,314 galaxyEnaQ0Ba-2,332 galaxyEnaQ0Ba-2,706 galaxyEnaQ0Ba-2,1077 galaxyEnaQ1Ay-4,314 galaxyEnaQ1Ay-4,332 galaxyEnaQ1Ay-4,706 galaxyEnaQ1Ay-4,1077 galaxyEnaQ1Ay-4-2,314 galaxyEnaQ1Ay-4-2,332 galaxyEnaQ1Ay-4-2,706 galaxyEnaQ1Ay-4-2,1077 galaxyEnaQ1Ay-4-2-2,314 galaxyEnaQ1Ay-4-2-2,332 galaxyEnaQ1Ay-4-2-2,706 galaxyEnaQ1Ay-4-2-2,1077 galaxyEnaQ1Ay-43,314 galaxyEnaQ1Ay-43,332 galaxyEnaQ1Ay-43,706 galaxyEnaQ1Ay-43,1077 galaxyEnaQ1Ba-1-17,314 galaxyEnaQ1Ba-1-17,332 galaxyEnaQ1Ba-1-17,706 galaxyEnaQ1Ba-1-17,1077 galaxyEnaQ2Ay-120,314 galaxyEnaQ2Ay-120,332 galaxyEnaQ2Ay-120,706 galaxyEnaQ2Ay-120,1077 galaxyEnaQ2Ay-122,314 galaxyEnaQ2Ay-122,332 galaxyEnaQ2Ay-122,706 galaxyEnaQ2Ay-122,1077 galaxyEnaQ2Ay-4,314 galaxyEnaQ2Ay-4,332 galaxyEnaQ2Ay-4,706 galaxyEnaQ2Ay-4,1077 galaxyEnaQ2Ay-5,314 galaxyEnaQ2Ay-5,332 galaxyEnaQ2Ay-5,706 galaxyEnaQ2Ay-5,1077 galaxyEnaQ2Ay-6,314 galaxyEnaQ2Ay-6,332 galaxyEnaQ2Ay-6,706 galaxyEnaQ2Ay-6,1077 galaxyEnaQ3Ay-4,314 galaxyEnaQ3Ay-4,332 galaxyEnaQ3Ay-4,706 galaxyEnaQ3Ay-4,1077 galaxyEnaQ3Ay-5,314 galaxyEnaQ3Ay-5,332 galaxyEnaQ3Ay-5,706 galaxyEnaQ3Ay-5,1077 galaxyEnaQ3Ay-9,314 galaxyEnaQ3Ay-9,332 galaxyEnaQ3Ay-9,706 galaxyEnaQ3Ay-9,1077 galaxyEnaQ3B-1-1-7,314 galaxyEnaQ3B-1-1-7,332 galaxyEnaQ3B-1-1-7,706 galaxyEnaQ3B-1-1-7,1077 galaxyEnaQ3B-1-617-2,314 galaxyEnaQ3B-1-617-2,332 galaxyEnaQ3B-1-617-2,706 galaxyEnaQ3B-1-617-2,1077 mccoy,425 nextstrainClade,24 nextstrainClade,85 nextstrainFreq,22 nextstrainGene,22 nextstrainParsimony,41 nextstrainSamples,38 pond,40 rappuoli,432 currently Q0_tracks,107 Q1_tracks,109 Q2_tracks,109 Q3_tracks,109 addgene,38 galaxyEna,109 galaxyEnaQ0Ba-1,105 galaxyEnaQ0Ba-1-1,105 galaxyEnaQ0Ba-1-1-11,105 galaxyEnaQ0Ba-1-17,105 galaxyEnaQ0Ba-2,105 galaxyEnaQ1Ay-4,105 galaxyEnaQ1Ay-4-2,105 galaxyEnaQ1Ay-4-2-2,105 galaxyEnaQ1Ay-43,105 galaxyEnaQ1Ba-1-17,105 galaxyEnaQ2Ay-120,105 galaxyEnaQ2Ay-122,105 galaxyEnaQ2Ay-4,105 galaxyEnaQ2Ay-5,105 galaxyEnaQ2Ay-6,105 galaxyEnaQ3Ay-4,105 galaxyEnaQ3Ay-5,105 galaxyEnaQ3Ay-9,105 galaxyEnaQ3B-1-1-7,105 galaxyEnaQ3B-1-617-2,105 gold,78 custom kimNp,114 kimRnaMod,239 cut-off rosettaMhc,290 cutoff gordon2,156 cutoffs variantMuts,940 cycloheximide Calu3_07hpi,178 ORFs,176 Vero6_05hpi,178 Vero6_24hpi,178 weizmanOrfs,184 cyril vaccines,565 cytometry abEscape,336 bloomEscMabAvg,340 bloomEscMax,346 bloomEscSerumAvg,341 bloomEscTop,344 escape,343 mccoy,336 rappuoli,343 cytoplamsic unipCov2Chain,329 unipCov2DisulfBond,325 unipCov2Domain,324 unipCov2LocCytopl,324 unipCov2LocExtra,324 unipCov2LocSignal,325 unipCov2LocTransMemb,325 unipCov2Modif,328 unipCov2Mut,325 unipCov2Other,325 unipCov2Repeat,323 unipCov2Struct,327 cytoplasmic unipCov2Chain,161 unipCov2Chain,169 unipCov2Chain,378 unipCov2DisulfBond,157 unipCov2DisulfBond,165 unipCov2DisulfBond,374 unipCov2Domain,156 unipCov2Domain,164 unipCov2Domain,373 unipCov2LocCytopl,1 unipCov2LocCytopl,3 unipCov2LocCytopl,156 unipCov2LocCytopl,164 unipCov2LocCytopl,373 unipCov2LocExtra,156 unipCov2LocExtra,164 unipCov2LocExtra,373 unipCov2LocSignal,157 unipCov2LocSignal,165 unipCov2LocSignal,374 unipCov2LocTransMemb,157 unipCov2LocTransMemb,165 unipCov2LocTransMemb,374 unipCov2Modif,160 unipCov2Modif,168 unipCov2Modif,377 unipCov2Mut,157 unipCov2Mut,165 unipCov2Mut,374 unipCov2Other,157 unipCov2Other,165 unipCov2Other,374 unipCov2Repeat,155 unipCov2Repeat,163 unipCov2Repeat,372 unipCov2Struct,159 unipCov2Struct,167 unipCov2Struct,376 cytosine cpgIslandExt,45 cpgIslandExtUnmasked,48 cpgIslandSuper,45 gc5BaseBw,24 cytotoxic cd8escape,18 d Calu3_07hpi,355 Calu3_07hpi,363 D_33Max,2 D_33Total,2 D_33Total,11 D_76Max,2 D_76Total,2 D_76Total,11 ORFs,353 ORFs,361 Q0_tracks,1230 Q0_tracks,1236 Q0_tracks,1238 Q0_tracks,1255 Q0_tracks,1306 Q0_tracks,1316 Q0_tracks,1318 Q0_tracks,1326 Q1_tracks,1232 Q1_tracks,1238 Q1_tracks,1240 Q1_tracks,1257 Q1_tracks,1308 Q1_tracks,1318 Q1_tracks,1320 Q1_tracks,1328 Q2_tracks,1232 Q2_tracks,1238 Q2_tracks,1240 Q2_tracks,1257 Q2_tracks,1308 Q2_tracks,1318 Q2_tracks,1320 Q2_tracks,1328 Q3_tracks,1232 Q3_tracks,1238 Q3_tracks,1240 Q3_tracks,1257 Q3_tracks,1308 Q3_tracks,1318 Q3_tracks,1320 Q3_tracks,1328 Starr_Bloom,245 Starr_Bloom_bind,239 Vero6_05hpi,355 Vero6_05hpi,363 Vero6_24hpi,355 Vero6_24hpi,363 abEscape,866 augustusGene,293 bloomEscMabAvg,870 bloomEscMax,876 bloomEscSerumAvg,871 bloomEscTop,874 cpgIslandExt,438 cpgIslandExtUnmasked,441 cpgIslandSuper,438 escape,873 galaxyEna,1232 galaxyEna,1238 galaxyEna,1240 galaxyEna,1257 galaxyEna,1308 galaxyEna,1318 galaxyEna,1320 galaxyEna,1328 galaxyEnaQ0Ba-1,1228 galaxyEnaQ0Ba-1,1234 galaxyEnaQ0Ba-1,1236 galaxyEnaQ0Ba-1,1253 galaxyEnaQ0Ba-1,1304 galaxyEnaQ0Ba-1,1314 galaxyEnaQ0Ba-1,1316 galaxyEnaQ0Ba-1,1324 galaxyEnaQ0Ba-1-1,1228 galaxyEnaQ0Ba-1-1,1234 galaxyEnaQ0Ba-1-1,1236 galaxyEnaQ0Ba-1-1,1253 galaxyEnaQ0Ba-1-1,1304 galaxyEnaQ0Ba-1-1,1314 galaxyEnaQ0Ba-1-1,1316 galaxyEnaQ0Ba-1-1,1324 galaxyEnaQ0Ba-1-1-11,1228 galaxyEnaQ0Ba-1-1-11,1234 galaxyEnaQ0Ba-1-1-11,1236 galaxyEnaQ0Ba-1-1-11,1253 galaxyEnaQ0Ba-1-1-11,1304 galaxyEnaQ0Ba-1-1-11,1314 galaxyEnaQ0Ba-1-1-11,1316 galaxyEnaQ0Ba-1-1-11,1324 galaxyEnaQ0Ba-1-17,1228 galaxyEnaQ0Ba-1-17,1234 galaxyEnaQ0Ba-1-17,1236 galaxyEnaQ0Ba-1-17,1253 galaxyEnaQ0Ba-1-17,1304 galaxyEnaQ0Ba-1-17,1314 galaxyEnaQ0Ba-1-17,1316 galaxyEnaQ0Ba-1-17,1324 galaxyEnaQ0Ba-2,1228 galaxyEnaQ0Ba-2,1234 galaxyEnaQ0Ba-2,1236 galaxyEnaQ0Ba-2,1253 galaxyEnaQ0Ba-2,1304 galaxyEnaQ0Ba-2,1314 galaxyEnaQ0Ba-2,1316 galaxyEnaQ0Ba-2,1324 galaxyEnaQ1Ay-4,1228 galaxyEnaQ1Ay-4,1234 galaxyEnaQ1Ay-4,1236 galaxyEnaQ1Ay-4,1253 galaxyEnaQ1Ay-4,1304 galaxyEnaQ1Ay-4,1314 galaxyEnaQ1Ay-4,1316 galaxyEnaQ1Ay-4,1324 galaxyEnaQ1Ay-4-2,1228 galaxyEnaQ1Ay-4-2,1234 galaxyEnaQ1Ay-4-2,1236 galaxyEnaQ1Ay-4-2,1253 galaxyEnaQ1Ay-4-2,1304 galaxyEnaQ1Ay-4-2,1314 galaxyEnaQ1Ay-4-2,1316 galaxyEnaQ1Ay-4-2,1324 galaxyEnaQ1Ay-4-2-2,1228 galaxyEnaQ1Ay-4-2-2,1234 galaxyEnaQ1Ay-4-2-2,1236 galaxyEnaQ1Ay-4-2-2,1253 galaxyEnaQ1Ay-4-2-2,1304 galaxyEnaQ1Ay-4-2-2,1314 galaxyEnaQ1Ay-4-2-2,1316 galaxyEnaQ1Ay-4-2-2,1324 galaxyEnaQ1Ay-43,1228 galaxyEnaQ1Ay-43,1234 galaxyEnaQ1Ay-43,1236 galaxyEnaQ1Ay-43,1253 galaxyEnaQ1Ay-43,1304 galaxyEnaQ1Ay-43,1314 galaxyEnaQ1Ay-43,1316 galaxyEnaQ1Ay-43,1324 galaxyEnaQ1Ba-1-17,1228 galaxyEnaQ1Ba-1-17,1234 galaxyEnaQ1Ba-1-17,1236 galaxyEnaQ1Ba-1-17,1253 galaxyEnaQ1Ba-1-17,1304 galaxyEnaQ1Ba-1-17,1314 galaxyEnaQ1Ba-1-17,1316 galaxyEnaQ1Ba-1-17,1324 galaxyEnaQ2Ay-120,1228 galaxyEnaQ2Ay-120,1234 galaxyEnaQ2Ay-120,1236 galaxyEnaQ2Ay-120,1253 galaxyEnaQ2Ay-120,1304 galaxyEnaQ2Ay-120,1314 galaxyEnaQ2Ay-120,1316 galaxyEnaQ2Ay-120,1324 galaxyEnaQ2Ay-122,1228 galaxyEnaQ2Ay-122,1234 galaxyEnaQ2Ay-122,1236 galaxyEnaQ2Ay-122,1253 galaxyEnaQ2Ay-122,1304 galaxyEnaQ2Ay-122,1314 galaxyEnaQ2Ay-122,1316 galaxyEnaQ2Ay-122,1324 galaxyEnaQ2Ay-4,1228 galaxyEnaQ2Ay-4,1234 galaxyEnaQ2Ay-4,1236 galaxyEnaQ2Ay-4,1253 galaxyEnaQ2Ay-4,1304 galaxyEnaQ2Ay-4,1314 galaxyEnaQ2Ay-4,1316 galaxyEnaQ2Ay-4,1324 galaxyEnaQ2Ay-5,1228 galaxyEnaQ2Ay-5,1234 galaxyEnaQ2Ay-5,1236 galaxyEnaQ2Ay-5,1253 galaxyEnaQ2Ay-5,1304 galaxyEnaQ2Ay-5,1314 galaxyEnaQ2Ay-5,1316 galaxyEnaQ2Ay-5,1324 galaxyEnaQ2Ay-6,1228 galaxyEnaQ2Ay-6,1234 galaxyEnaQ2Ay-6,1236 galaxyEnaQ2Ay-6,1253 galaxyEnaQ2Ay-6,1304 galaxyEnaQ2Ay-6,1314 galaxyEnaQ2Ay-6,1316 galaxyEnaQ2Ay-6,1324 galaxyEnaQ3Ay-4,1228 galaxyEnaQ3Ay-4,1234 galaxyEnaQ3Ay-4,1236 galaxyEnaQ3Ay-4,1253 galaxyEnaQ3Ay-4,1304 galaxyEnaQ3Ay-4,1314 galaxyEnaQ3Ay-4,1316 galaxyEnaQ3Ay-4,1324 galaxyEnaQ3Ay-5,1228 galaxyEnaQ3Ay-5,1234 galaxyEnaQ3Ay-5,1236 galaxyEnaQ3Ay-5,1253 galaxyEnaQ3Ay-5,1304 galaxyEnaQ3Ay-5,1314 galaxyEnaQ3Ay-5,1316 galaxyEnaQ3Ay-5,1324 galaxyEnaQ3Ay-9,1228 galaxyEnaQ3Ay-9,1234 galaxyEnaQ3Ay-9,1236 galaxyEnaQ3Ay-9,1253 galaxyEnaQ3Ay-9,1304 galaxyEnaQ3Ay-9,1314 galaxyEnaQ3Ay-9,1316 galaxyEnaQ3Ay-9,1324 galaxyEnaQ3B-1-1-7,1228 galaxyEnaQ3B-1-1-7,1234 galaxyEnaQ3B-1-1-7,1236 galaxyEnaQ3B-1-1-7,1253 galaxyEnaQ3B-1-1-7,1304 galaxyEnaQ3B-1-1-7,1314 galaxyEnaQ3B-1-1-7,1316 galaxyEnaQ3B-1-1-7,1324 galaxyEnaQ3B-1-617-2,1228 galaxyEnaQ3B-1-617-2,1234 galaxyEnaQ3B-1-617-2,1236 galaxyEnaQ3B-1-617-2,1253 galaxyEnaQ3B-1-617-2,1304 galaxyEnaQ3B-1-617-2,1314 galaxyEnaQ3B-1-617-2,1316 galaxyEnaQ3B-1-617-2,1324 genscan,192 gold,148 kimIvtCov,174 kimTranscripts,461 mccoy,866 multiz7way,1082 multiz7way,1135 multiz7way,1258 problematicSites,598 rappuoli,873 recomb,340 sarsCov2Phylo,992 sarsCov2Phylo,1109 sarsCov2PhyloPub,1112 sarsCov2PhyloPub,1232 strainCons119way,2460 strainCons119way,2513 strainCons119way,2636 strainCons44way,2055 strainCons44way,2108 strainCons44way,2231 transcriptome,467 treangen,305 variantMuts,1496 weizmanOrfs,361 weizmanOrfs,369 d614g spikeMuts,136 d71-5 unipCov2AliSwissprot,461 unipCov2Chain,690 unipCov2DisulfBond,686 unipCov2Domain,685 unipCov2Interest,344 unipCov2LocCytopl,685 unipCov2LocExtra,685 unipCov2LocSignal,686 unipCov2LocTransMemb,686 unipCov2Modif,689 unipCov2Mut,686 unipCov2Other,686 unipCov2Repeat,684 unipCov2Struct,688 d80y spikeMuts,124 d854-62 iedb,128 d_33 D_33Max,10 d_76 D_76Max,10 d_bind_avg D_bind_avg,1 d_expr_avg D_expr_avg_Expression,1 dabrera variantMuts,1340 dae vaccines,491 dai IgG_Z-score-_COVID-19_patients,417 IgM_Z-score-_COVID-19_patients,417 bpmIggCovidSum,426 bpmIgmCovidSum,426 pbm,426 damle iedb,109 dan IgG_Z-score-_COVID-19_patients,412 IgM_Z-score-_COVID-19_patients,412 bpmIggCovidSum,421 bpmIgmCovidSum,421 pbm,421 daniel ncbiGeneBGP,179 ncbiProducts,195 primers,368 darach primers,385 dark Q0_tracks,455 Q1_tracks,457 Q2_tracks,457 Q3_tracks,457 epitopes,49 epitopes,54 galaxyEna,457 galaxyEnaQ0Ba-1,453 galaxyEnaQ0Ba-1-1,453 galaxyEnaQ0Ba-1-1-11,453 galaxyEnaQ0Ba-1-17,453 galaxyEnaQ0Ba-2,453 galaxyEnaQ1Ay-4,453 galaxyEnaQ1Ay-4-2,453 galaxyEnaQ1Ay-4-2-2,453 galaxyEnaQ1Ay-43,453 galaxyEnaQ1Ba-1-17,453 galaxyEnaQ2Ay-120,453 galaxyEnaQ2Ay-122,453 galaxyEnaQ2Ay-4,453 galaxyEnaQ2Ay-5,453 galaxyEnaQ2Ay-6,453 galaxyEnaQ3Ay-4,453 galaxyEnaQ3Ay-5,453 galaxyEnaQ3Ay-9,453 galaxyEnaQ3B-1-1-7,453 galaxyEnaQ3B-1-617-2,453 rnaStructRangan,56 unipCov2Chain,391 unipCov2Chain,396 unipCov2DisulfBond,387 unipCov2DisulfBond,392 unipCov2Domain,386 unipCov2Domain,391 unipCov2LocCytopl,386 unipCov2LocCytopl,391 unipCov2LocExtra,386 unipCov2LocExtra,391 unipCov2LocSignal,387 unipCov2LocSignal,392 unipCov2LocTransMemb,387 unipCov2LocTransMemb,392 unipCov2Modif,390 unipCov2Modif,395 unipCov2Mut,387 unipCov2Mut,392 unipCov2Other,387 unipCov2Other,392 unipCov2Repeat,385 unipCov2Repeat,390 unipCov2Struct,389 unipCov2Struct,394 darker multiz7way,141 strainCons119way,490 strainCons44way,438 das rnaStructRangan,107 data A_bind_avg,3 A_expr_avg_Expression,3 C_bind_avg,3 C_expr_avg_Expression,3 Calu3_07hpi,30 Calu3_07hpi,49 Calu3_07hpi,225 Calu3_07hpi,232 Calu3_07hpi,265 Calu3_07hpi,305 Calu3_07hpi,309 Calu3_07hpi,325 Calu3_07hpi,339 D_bind_avg,3 D_expr_avg_Expression,3 E_bind_avg,3 E_expr_avg_Expression,3 F_bind_avg,3 F_expr_avg_Expression,3 G_bind_avg,3 G_expr_avg_Expression,3 H_bind_avg,3 H_expr_avg_Expression,3 I_bind_avg,3 I_expr_avg_Expression,3 IgG_Z-score-_COVID-19_patients,281 IgG_Z-score-_COVID-19_patients,285 IgG_Z-score-_COVID-19_patients,301 IgG_Z-score-_COVID-19_patients,395 IgM_Z-score-_COVID-19_patients,281 IgM_Z-score-_COVID-19_patients,285 IgM_Z-score-_COVID-19_patients,301 IgM_Z-score-_COVID-19_patients,395 K_bind_avg,3 K_expr_avg_Expression,3 L_bind_avg,3 L_expr_avg_Expression,3 M_bind_avg,3 M_expr_avg_Expression,3 N_bind_avg,3 N_expr_avg_Expression,3 Negative_Selection,9 ORFs,28 ORFs,47 ORFs,223 ORFs,230 ORFs,263 ORFs,303 ORFs,307 ORFs,323 ORFs,337 P_bind_avg,3 P_expr_avg_Expression,3 PhyloCSF_smooth,623 PhyloCSF_smooth,628 PhyloCSF_smooth,643 PhyloCSF_smooth,664 Positive_Selection,9 Q0_tracks,46 Q0_tracks,60 Q0_tracks,77 Q0_tracks,117 Q0_tracks,137 Q0_tracks,269 Q0_tracks,292 Q0_tracks,311 Q0_tracks,365 Q0_tracks,377 Q0_tracks,662 Q0_tracks,776 Q0_tracks,785 Q0_tracks,809 Q0_tracks,834 Q0_tracks,848 Q0_tracks,853 Q0_tracks,944 Q0_tracks,1056 Q0_tracks,1157 Q0_tracks,1183 Q0_tracks,1195 Q0_tracks,1285 Q1_tracks,48 Q1_tracks,62 Q1_tracks,79 Q1_tracks,119 Q1_tracks,139 Q1_tracks,271 Q1_tracks,294 Q1_tracks,313 Q1_tracks,367 Q1_tracks,379 Q1_tracks,664 Q1_tracks,778 Q1_tracks,787 Q1_tracks,811 Q1_tracks,836 Q1_tracks,850 Q1_tracks,855 Q1_tracks,946 Q1_tracks,1058 Q1_tracks,1159 Q1_tracks,1185 Q1_tracks,1197 Q1_tracks,1287 Q2_tracks,48 Q2_tracks,62 Q2_tracks,79 Q2_tracks,119 Q2_tracks,139 Q2_tracks,271 Q2_tracks,294 Q2_tracks,313 Q2_tracks,367 Q2_tracks,379 Q2_tracks,664 Q2_tracks,778 Q2_tracks,787 Q2_tracks,811 Q2_tracks,836 Q2_tracks,850 Q2_tracks,855 Q2_tracks,946 Q2_tracks,1058 Q2_tracks,1159 Q2_tracks,1185 Q2_tracks,1197 Q2_tracks,1287 Q3_tracks,48 Q3_tracks,62 Q3_tracks,79 Q3_tracks,119 Q3_tracks,139 Q3_tracks,271 Q3_tracks,294 Q3_tracks,313 Q3_tracks,367 Q3_tracks,379 Q3_tracks,664 Q3_tracks,778 Q3_tracks,787 Q3_tracks,811 Q3_tracks,836 Q3_tracks,850 Q3_tracks,855 Q3_tracks,946 Q3_tracks,1058 Q3_tracks,1159 Q3_tracks,1185 Q3_tracks,1197 Q3_tracks,1287 Q_bind_avg,3 Q_expr_avg_Expression,3 R_bind_avg,3 R_expr_avg_Expression,3 S_bind_avg,3 S_expr_avg_Expression,3 Starr_Bloom,22 Starr_Bloom,160 Starr_Bloom,197 Starr_Bloom,201 Starr_Bloom,217 Starr_Bloom,231 Starr_Bloom_bind,23 Starr_Bloom_bind,154 Starr_Bloom_bind,191 Starr_Bloom_bind,195 Starr_Bloom_bind,211 Starr_Bloom_bind,225 T_bind_avg,3 T_expr_avg_Expression,3 V_bind_avg,3 V_expr_avg_Expression,3 Vero6_05hpi,30 Vero6_05hpi,49 Vero6_05hpi,225 Vero6_05hpi,232 Vero6_05hpi,265 Vero6_05hpi,305 Vero6_05hpi,309 Vero6_05hpi,325 Vero6_05hpi,339 Vero6_24hpi,30 Vero6_24hpi,49 Vero6_24hpi,225 Vero6_24hpi,232 Vero6_24hpi,265 Vero6_24hpi,305 Vero6_24hpi,309 Vero6_24hpi,325 Vero6_24hpi,339 W_bind_avg,3 W_expr_avg_Expression,3 Y_bind_avg,3 Y_expr_avg_Expression,3 abEscape,51 abEscape,69 abEscape,235 abEscape,243 abEscape,274 abEscape,373 abEscape,413 abEscape,447 abEscape,501 abEscape,530 abEscape,542 abEscape,570 abEscape,601 abEscape,649 abEscape,653 abEscape,669 abEscape,683 addgene,161 addgene,224 artic,64 artic,68 artic,84 artic,177 articV4,64 articV4,68 articV4,84 articV4,177 articV4_1,75 articV4_1,79 articV4_1,97 articV4_1,190 bloomEscMabAvg,55 bloomEscMabAvg,73 bloomEscMabAvg,239 bloomEscMabAvg,247 bloomEscMabAvg,278 bloomEscMabAvg,377 bloomEscMabAvg,417 bloomEscMabAvg,451 bloomEscMabAvg,505 bloomEscMabAvg,534 bloomEscMabAvg,546 bloomEscMabAvg,574 bloomEscMabAvg,605 bloomEscMabAvg,653 bloomEscMabAvg,657 bloomEscMabAvg,673 bloomEscMabAvg,687 bloomEscMax,61 bloomEscMax,79 bloomEscMax,245 bloomEscMax,253 bloomEscMax,284 bloomEscMax,383 bloomEscMax,423 bloomEscMax,457 bloomEscMax,511 bloomEscMax,540 bloomEscMax,552 bloomEscMax,580 bloomEscMax,611 bloomEscMax,659 bloomEscMax,663 bloomEscMax,679 bloomEscMax,693 bloomEscSerumAvg,56 bloomEscSerumAvg,74 bloomEscSerumAvg,240 bloomEscSerumAvg,248 bloomEscSerumAvg,279 bloomEscSerumAvg,378 bloomEscSerumAvg,418 bloomEscSerumAvg,452 bloomEscSerumAvg,506 bloomEscSerumAvg,535 bloomEscSerumAvg,547 bloomEscSerumAvg,575 bloomEscSerumAvg,606 bloomEscSerumAvg,654 bloomEscSerumAvg,658 bloomEscSerumAvg,674 bloomEscSerumAvg,688 bloomEscTop,59 bloomEscTop,77 bloomEscTop,243 bloomEscTop,251 bloomEscTop,282 bloomEscTop,381 bloomEscTop,421 bloomEscTop,455 bloomEscTop,509 bloomEscTop,538 bloomEscTop,550 bloomEscTop,578 bloomEscTop,609 bloomEscTop,657 bloomEscTop,661 bloomEscTop,677 bloomEscTop,691 bpmIggCovidSum,290 bpmIggCovidSum,294 bpmIggCovidSum,310 bpmIggCovidSum,404 bpmIgmCovidSum,290 bpmIgmCovidSum,294 bpmIgmCovidSum,310 bpmIgmCovidSum,404 cas13Crispr,349 cas13Crispr,353 cas13Crispr,369 cas13Crispr,462 contacts,277 contacts,281 contacts,297 contacts,390 cpgIslandExt,403 cpgIslandExt,493 cpgIslandExt,504 cpgIslandExt,525 cpgIslandExtUnmasked,406 cpgIslandExtUnmasked,496 cpgIslandExtUnmasked,507 cpgIslandExtUnmasked,528 cpgIslandSuper,403 cpgIslandSuper,493 cpgIslandSuper,504 cpgIslandSuper,525 epitopes,187 epitopes,226 epitopes,303 escape,58 escape,76 escape,242 escape,250 escape,281 escape,380 escape,420 escape,454 escape,508 escape,537 escape,549 escape,577 escape,608 escape,656 escape,660 escape,676 escape,690 galaxyEna,16 galaxyEna,48 galaxyEna,62 galaxyEna,79 galaxyEna,119 galaxyEna,139 galaxyEna,271 galaxyEna,294 galaxyEna,313 galaxyEna,367 galaxyEna,379 galaxyEna,664 galaxyEna,778 galaxyEna,787 galaxyEna,811 galaxyEna,836 galaxyEna,850 galaxyEna,855 galaxyEna,946 galaxyEna,1058 galaxyEna,1159 galaxyEna,1185 galaxyEna,1197 galaxyEna,1287 galaxyEnaQ0Ba-1,44 galaxyEnaQ0Ba-1,58 galaxyEnaQ0Ba-1,75 galaxyEnaQ0Ba-1,115 galaxyEnaQ0Ba-1,135 galaxyEnaQ0Ba-1,267 galaxyEnaQ0Ba-1,290 galaxyEnaQ0Ba-1,309 galaxyEnaQ0Ba-1,363 galaxyEnaQ0Ba-1,375 galaxyEnaQ0Ba-1,660 galaxyEnaQ0Ba-1,774 galaxyEnaQ0Ba-1,783 galaxyEnaQ0Ba-1,807 galaxyEnaQ0Ba-1,832 galaxyEnaQ0Ba-1,846 galaxyEnaQ0Ba-1,851 galaxyEnaQ0Ba-1,942 galaxyEnaQ0Ba-1,1054 galaxyEnaQ0Ba-1,1155 galaxyEnaQ0Ba-1,1181 galaxyEnaQ0Ba-1,1193 galaxyEnaQ0Ba-1,1283 galaxyEnaQ0Ba-1-1,44 galaxyEnaQ0Ba-1-1,58 galaxyEnaQ0Ba-1-1,75 galaxyEnaQ0Ba-1-1,115 galaxyEnaQ0Ba-1-1,135 galaxyEnaQ0Ba-1-1,267 galaxyEnaQ0Ba-1-1,290 galaxyEnaQ0Ba-1-1,309 galaxyEnaQ0Ba-1-1,363 galaxyEnaQ0Ba-1-1,375 galaxyEnaQ0Ba-1-1,660 galaxyEnaQ0Ba-1-1,774 galaxyEnaQ0Ba-1-1,783 galaxyEnaQ0Ba-1-1,807 galaxyEnaQ0Ba-1-1,832 galaxyEnaQ0Ba-1-1,846 galaxyEnaQ0Ba-1-1,851 galaxyEnaQ0Ba-1-1,942 galaxyEnaQ0Ba-1-1,1054 galaxyEnaQ0Ba-1-1,1155 galaxyEnaQ0Ba-1-1,1181 galaxyEnaQ0Ba-1-1,1193 galaxyEnaQ0Ba-1-1,1283 galaxyEnaQ0Ba-1-1-11,44 galaxyEnaQ0Ba-1-1-11,58 galaxyEnaQ0Ba-1-1-11,75 galaxyEnaQ0Ba-1-1-11,115 galaxyEnaQ0Ba-1-1-11,135 galaxyEnaQ0Ba-1-1-11,267 galaxyEnaQ0Ba-1-1-11,290 galaxyEnaQ0Ba-1-1-11,309 galaxyEnaQ0Ba-1-1-11,363 galaxyEnaQ0Ba-1-1-11,375 galaxyEnaQ0Ba-1-1-11,660 galaxyEnaQ0Ba-1-1-11,774 galaxyEnaQ0Ba-1-1-11,783 galaxyEnaQ0Ba-1-1-11,807 galaxyEnaQ0Ba-1-1-11,832 galaxyEnaQ0Ba-1-1-11,846 galaxyEnaQ0Ba-1-1-11,851 galaxyEnaQ0Ba-1-1-11,942 galaxyEnaQ0Ba-1-1-11,1054 galaxyEnaQ0Ba-1-1-11,1155 galaxyEnaQ0Ba-1-1-11,1181 galaxyEnaQ0Ba-1-1-11,1193 galaxyEnaQ0Ba-1-1-11,1283 galaxyEnaQ0Ba-1-17,44 galaxyEnaQ0Ba-1-17,58 galaxyEnaQ0Ba-1-17,75 galaxyEnaQ0Ba-1-17,115 galaxyEnaQ0Ba-1-17,135 galaxyEnaQ0Ba-1-17,267 galaxyEnaQ0Ba-1-17,290 galaxyEnaQ0Ba-1-17,309 galaxyEnaQ0Ba-1-17,363 galaxyEnaQ0Ba-1-17,375 galaxyEnaQ0Ba-1-17,660 galaxyEnaQ0Ba-1-17,774 galaxyEnaQ0Ba-1-17,783 galaxyEnaQ0Ba-1-17,807 galaxyEnaQ0Ba-1-17,832 galaxyEnaQ0Ba-1-17,846 galaxyEnaQ0Ba-1-17,851 galaxyEnaQ0Ba-1-17,942 galaxyEnaQ0Ba-1-17,1054 galaxyEnaQ0Ba-1-17,1155 galaxyEnaQ0Ba-1-17,1181 galaxyEnaQ0Ba-1-17,1193 galaxyEnaQ0Ba-1-17,1283 galaxyEnaQ0Ba-2,44 galaxyEnaQ0Ba-2,58 galaxyEnaQ0Ba-2,75 galaxyEnaQ0Ba-2,115 galaxyEnaQ0Ba-2,135 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galaxyEnaQ1Ay-4-2,363 galaxyEnaQ1Ay-4-2,375 galaxyEnaQ1Ay-4-2,660 galaxyEnaQ1Ay-4-2,774 galaxyEnaQ1Ay-4-2,783 galaxyEnaQ1Ay-4-2,807 galaxyEnaQ1Ay-4-2,832 galaxyEnaQ1Ay-4-2,846 galaxyEnaQ1Ay-4-2,851 galaxyEnaQ1Ay-4-2,942 galaxyEnaQ1Ay-4-2,1054 galaxyEnaQ1Ay-4-2,1155 galaxyEnaQ1Ay-4-2,1181 galaxyEnaQ1Ay-4-2,1193 galaxyEnaQ1Ay-4-2,1283 galaxyEnaQ1Ay-4-2-2,44 galaxyEnaQ1Ay-4-2-2,58 galaxyEnaQ1Ay-4-2-2,75 galaxyEnaQ1Ay-4-2-2,115 galaxyEnaQ1Ay-4-2-2,135 galaxyEnaQ1Ay-4-2-2,267 galaxyEnaQ1Ay-4-2-2,290 galaxyEnaQ1Ay-4-2-2,309 galaxyEnaQ1Ay-4-2-2,363 galaxyEnaQ1Ay-4-2-2,375 galaxyEnaQ1Ay-4-2-2,660 galaxyEnaQ1Ay-4-2-2,774 galaxyEnaQ1Ay-4-2-2,783 galaxyEnaQ1Ay-4-2-2,807 galaxyEnaQ1Ay-4-2-2,832 galaxyEnaQ1Ay-4-2-2,846 galaxyEnaQ1Ay-4-2-2,851 galaxyEnaQ1Ay-4-2-2,942 galaxyEnaQ1Ay-4-2-2,1054 galaxyEnaQ1Ay-4-2-2,1155 galaxyEnaQ1Ay-4-2-2,1181 galaxyEnaQ1Ay-4-2-2,1193 galaxyEnaQ1Ay-4-2-2,1283 galaxyEnaQ1Ay-43,44 galaxyEnaQ1Ay-43,58 galaxyEnaQ1Ay-43,75 galaxyEnaQ1Ay-43,115 galaxyEnaQ1Ay-43,135 galaxyEnaQ1Ay-43,267 galaxyEnaQ1Ay-43,290 galaxyEnaQ1Ay-43,309 galaxyEnaQ1Ay-43,363 galaxyEnaQ1Ay-43,375 galaxyEnaQ1Ay-43,660 galaxyEnaQ1Ay-43,774 galaxyEnaQ1Ay-43,783 galaxyEnaQ1Ay-43,807 galaxyEnaQ1Ay-43,832 galaxyEnaQ1Ay-43,846 galaxyEnaQ1Ay-43,851 galaxyEnaQ1Ay-43,942 galaxyEnaQ1Ay-43,1054 galaxyEnaQ1Ay-43,1155 galaxyEnaQ1Ay-43,1181 galaxyEnaQ1Ay-43,1193 galaxyEnaQ1Ay-43,1283 galaxyEnaQ1Ba-1-17,44 galaxyEnaQ1Ba-1-17,58 galaxyEnaQ1Ba-1-17,75 galaxyEnaQ1Ba-1-17,115 galaxyEnaQ1Ba-1-17,135 galaxyEnaQ1Ba-1-17,267 galaxyEnaQ1Ba-1-17,290 galaxyEnaQ1Ba-1-17,309 galaxyEnaQ1Ba-1-17,363 galaxyEnaQ1Ba-1-17,375 galaxyEnaQ1Ba-1-17,660 galaxyEnaQ1Ba-1-17,774 galaxyEnaQ1Ba-1-17,783 galaxyEnaQ1Ba-1-17,807 galaxyEnaQ1Ba-1-17,832 galaxyEnaQ1Ba-1-17,846 galaxyEnaQ1Ba-1-17,851 galaxyEnaQ1Ba-1-17,942 galaxyEnaQ1Ba-1-17,1054 galaxyEnaQ1Ba-1-17,1155 galaxyEnaQ1Ba-1-17,1181 galaxyEnaQ1Ba-1-17,1193 galaxyEnaQ1Ba-1-17,1283 galaxyEnaQ2Ay-120,44 galaxyEnaQ2Ay-120,58 galaxyEnaQ2Ay-120,75 galaxyEnaQ2Ay-120,115 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galaxyEnaQ2Ay-6,290 galaxyEnaQ2Ay-6,309 galaxyEnaQ2Ay-6,363 galaxyEnaQ2Ay-6,375 galaxyEnaQ2Ay-6,660 galaxyEnaQ2Ay-6,774 galaxyEnaQ2Ay-6,783 galaxyEnaQ2Ay-6,807 galaxyEnaQ2Ay-6,832 galaxyEnaQ2Ay-6,846 galaxyEnaQ2Ay-6,851 galaxyEnaQ2Ay-6,942 galaxyEnaQ2Ay-6,1054 galaxyEnaQ2Ay-6,1155 galaxyEnaQ2Ay-6,1181 galaxyEnaQ2Ay-6,1193 galaxyEnaQ2Ay-6,1283 galaxyEnaQ3Ay-4,44 galaxyEnaQ3Ay-4,58 galaxyEnaQ3Ay-4,75 galaxyEnaQ3Ay-4,115 galaxyEnaQ3Ay-4,135 galaxyEnaQ3Ay-4,267 galaxyEnaQ3Ay-4,290 galaxyEnaQ3Ay-4,309 galaxyEnaQ3Ay-4,363 galaxyEnaQ3Ay-4,375 galaxyEnaQ3Ay-4,660 galaxyEnaQ3Ay-4,774 galaxyEnaQ3Ay-4,783 galaxyEnaQ3Ay-4,807 galaxyEnaQ3Ay-4,832 galaxyEnaQ3Ay-4,846 galaxyEnaQ3Ay-4,851 galaxyEnaQ3Ay-4,942 galaxyEnaQ3Ay-4,1054 galaxyEnaQ3Ay-4,1155 galaxyEnaQ3Ay-4,1181 galaxyEnaQ3Ay-4,1193 galaxyEnaQ3Ay-4,1283 galaxyEnaQ3Ay-5,44 galaxyEnaQ3Ay-5,58 galaxyEnaQ3Ay-5,75 galaxyEnaQ3Ay-5,115 galaxyEnaQ3Ay-5,135 galaxyEnaQ3Ay-5,267 galaxyEnaQ3Ay-5,290 galaxyEnaQ3Ay-5,309 galaxyEnaQ3Ay-5,363 galaxyEnaQ3Ay-5,375 galaxyEnaQ3Ay-5,660 galaxyEnaQ3Ay-5,774 galaxyEnaQ3Ay-5,783 galaxyEnaQ3Ay-5,807 galaxyEnaQ3Ay-5,832 galaxyEnaQ3Ay-5,846 galaxyEnaQ3Ay-5,851 galaxyEnaQ3Ay-5,942 galaxyEnaQ3Ay-5,1054 galaxyEnaQ3Ay-5,1155 galaxyEnaQ3Ay-5,1181 galaxyEnaQ3Ay-5,1193 galaxyEnaQ3Ay-5,1283 galaxyEnaQ3Ay-9,44 galaxyEnaQ3Ay-9,58 galaxyEnaQ3Ay-9,75 galaxyEnaQ3Ay-9,115 galaxyEnaQ3Ay-9,135 galaxyEnaQ3Ay-9,267 galaxyEnaQ3Ay-9,290 galaxyEnaQ3Ay-9,309 galaxyEnaQ3Ay-9,363 galaxyEnaQ3Ay-9,375 galaxyEnaQ3Ay-9,660 galaxyEnaQ3Ay-9,774 galaxyEnaQ3Ay-9,783 galaxyEnaQ3Ay-9,807 galaxyEnaQ3Ay-9,832 galaxyEnaQ3Ay-9,846 galaxyEnaQ3Ay-9,851 galaxyEnaQ3Ay-9,942 galaxyEnaQ3Ay-9,1054 galaxyEnaQ3Ay-9,1155 galaxyEnaQ3Ay-9,1181 galaxyEnaQ3Ay-9,1193 galaxyEnaQ3Ay-9,1283 galaxyEnaQ3B-1-1-7,44 galaxyEnaQ3B-1-1-7,58 galaxyEnaQ3B-1-1-7,75 galaxyEnaQ3B-1-1-7,115 galaxyEnaQ3B-1-1-7,135 galaxyEnaQ3B-1-1-7,267 galaxyEnaQ3B-1-1-7,290 galaxyEnaQ3B-1-1-7,309 galaxyEnaQ3B-1-1-7,363 galaxyEnaQ3B-1-1-7,375 galaxyEnaQ3B-1-1-7,660 galaxyEnaQ3B-1-1-7,774 galaxyEnaQ3B-1-1-7,783 galaxyEnaQ3B-1-1-7,807 galaxyEnaQ3B-1-1-7,832 galaxyEnaQ3B-1-1-7,846 galaxyEnaQ3B-1-1-7,851 galaxyEnaQ3B-1-1-7,942 galaxyEnaQ3B-1-1-7,1054 galaxyEnaQ3B-1-1-7,1155 galaxyEnaQ3B-1-1-7,1181 galaxyEnaQ3B-1-1-7,1193 galaxyEnaQ3B-1-1-7,1283 galaxyEnaQ3B-1-617-2,44 galaxyEnaQ3B-1-617-2,58 galaxyEnaQ3B-1-617-2,75 galaxyEnaQ3B-1-617-2,115 galaxyEnaQ3B-1-617-2,135 galaxyEnaQ3B-1-617-2,267 galaxyEnaQ3B-1-617-2,290 galaxyEnaQ3B-1-617-2,309 galaxyEnaQ3B-1-617-2,363 galaxyEnaQ3B-1-617-2,375 galaxyEnaQ3B-1-617-2,660 galaxyEnaQ3B-1-617-2,774 galaxyEnaQ3B-1-617-2,783 galaxyEnaQ3B-1-617-2,807 galaxyEnaQ3B-1-617-2,832 galaxyEnaQ3B-1-617-2,846 galaxyEnaQ3B-1-617-2,851 galaxyEnaQ3B-1-617-2,942 galaxyEnaQ3B-1-617-2,1054 galaxyEnaQ3B-1-617-2,1155 galaxyEnaQ3B-1-617-2,1181 galaxyEnaQ3B-1-617-2,1193 galaxyEnaQ3B-1-617-2,1283 gap,96 gc5BaseBw,73 gordon2,19 icshape,17 icshape,53 icshape,80 icshape,98 icshape,109 icshape,112 icshape,174 kimRnaMod,111 kimRnaMod,115 kimRnaMod,131 kimRnaMod,224 kimTranscripts,328 kimTranscripts,332 kimTranscripts,348 kimTranscripts,442 mccoy,51 mccoy,69 mccoy,235 mccoy,243 mccoy,274 mccoy,373 mccoy,413 mccoy,447 mccoy,501 mccoy,530 mccoy,542 mccoy,570 mccoy,601 mccoy,649 mccoy,653 mccoy,669 mccoy,683 microdel,137 microdel,141 microdel,156 microdel,181 multiz7way,796 multiz7way,800 ncbiGeneBGP,39 ncbiGeneBGP,43 ncbiGeneBGP,54 ncbiGeneBGP,157 ncbiGeneBGP,197 ncbiProducts,55 ncbiProducts,59 ncbiProducts,70 ncbiProducts,173 ncbiProducts,213 nextstrainClade,17 nextstrainClade,167 nextstrainClade,177 nextstrainClade,194 nextstrainClade,205 nextstrainClade,208 nextstrainFreq,14 nextstrainFreq,159 nextstrainFreq,169 nextstrainFreq,187 nextstrainFreq,198 nextstrainFreq,201 nextstrainFreq,262 nextstrainFreq,268 nextstrainFreq,272 nextstrainFreq,285 nextstrainFreq,292 nextstrainFreq,323 nextstrainFreq,325 nextstrainFreq,337 nextstrainGene,15 nextstrainGene,117 nextstrainGene,127 nextstrainGene,144 nextstrainGene,155 nextstrainGene,158 nextstrainParsimony,17 nextstrainParsimony,316 nextstrainParsimony,339 nextstrainParsimony,356 nextstrainParsimony,367 nextstrainParsimony,370 nextstrainParsimony,396 nextstrainParsimony,416 nextstrainSamples,17 nextstrainSamples,88 nextstrainSamples,454 nextstrainSamples,646 nextstrainSamples,661 nextstrainSamples,687 nextstrainSamples,724 nextstrainSamples,893 nextstrainSamples,920 nextstrainSamples,924 nextstrainSamples,937 nextstrainSamples,944 nextstrainSamples,969 nextstrainSamples,986 pbm,10 pbm,290 pbm,294 pbm,310 pbm,404 pbmShanghai,278 pbmShanghai,407 pbmShanghai,411 pbmShanghai,427 pbmShanghai,487 pdb,4 pdb,27 pdb,151 phyloGenes,325 phyloGenes,329 phyloGenes,345 phyloGenes,439 phyloGenes,451 pond,20 pond,62 pond,84 pond,227 poranHla1,138 poranHla1,142 poranHla1,158 poranHla1,252 poranHla2,138 poranHla2,142 poranHla2,158 poranHla2,252 primers,314 primers,331 primers,342 primers,345 primers,357 primers,371 problematicSites,475 problematicSites,482 problematicSites,486 problematicSites,514 problematicSites,525 problematicSites,528 problematicSites,555 problematicSites,578 publicAnnots,2 publicAnnots,4 pyle,18 pyle,52 pyle,122 pyle,192 pyle,267 rapid,218 rapid,222 rapid,238 rapid,331 rappuoli,58 rappuoli,76 rappuoli,242 rappuoli,250 rappuoli,281 rappuoli,380 rappuoli,420 rappuoli,454 rappuoli,508 rappuoli,537 rappuoli,549 rappuoli,577 rappuoli,608 rappuoli,656 rappuoli,660 rappuoli,676 rappuoli,690 recomb,271 recomb,288 recomb,299 recomb,302 recomb,320 resist,84 resist,87 resist,98 resist,134 resistPred,58 resistPred,64 resistPred,162 resistPred,169 resistPred,175 resistPred,190 resistPred,226 resistPred,264 rosettaMhc,71 rosettaMhc,371 sarsCov2Phylo,701 sarsCov2Phylo,719 sarsCov2Phylo,730 sarsCov2Phylo,829 sarsCov2Phylo,870 sarsCov2Phylo,874 sarsCov2Phylo,887 sarsCov2Phylo,894 sarsCov2Phylo,919 sarsCov2Phylo,1089 sarsCov2PhyloPub,741 sarsCov2PhyloPub,808 sarsCov2PhyloPub,869 sarsCov2PhyloPub,880 sarsCov2PhyloPub,912 sarsCov2PhyloPub,946 sarsCov2PhyloPub,976 sarsCov2PhyloPub,980 sarsCov2PhyloPub,993 sarsCov2PhyloPub,1000 sarsCov2PhyloPub,1025 sarsCov2PhyloPub,1209 spikeMuts,293 spikeMuts,297 spikeMuts,307 spikeMuts,322 spikeMuts,349 strainCons119way,20 strainCons119way,399 strainCons44way,17 strainCons44way,347 swift,147 swift,151 swift,167 swift,260 targets,15 transcriptome,334 transcriptome,338 transcriptome,354 transcriptome,448 treangen,6 treangen,65 treangen,116 treangen,203 treangen,214 treangen,278 ucscToINSDC,34 ucscToINSDC,44 ucscToRefSeq,28 ucscToRefSeq,38 unipCov2AliSwissprot,260 unipCov2AliSwissprot,264 unipCov2AliSwissprot,275 unipCov2AliSwissprot,394 unipCov2AliSwissprot,436 unipCov2Chain,30 unipCov2Chain,490 unipCov2Chain,494 unipCov2Chain,505 unipCov2Chain,624 unipCov2Chain,665 unipCov2DisulfBond,26 unipCov2DisulfBond,486 unipCov2DisulfBond,490 unipCov2DisulfBond,501 unipCov2DisulfBond,620 unipCov2DisulfBond,661 unipCov2Domain,25 unipCov2Domain,485 unipCov2Domain,489 unipCov2Domain,500 unipCov2Domain,619 unipCov2Domain,660 unipCov2Interest,32 unipCov2Interest,166 unipCov2Interest,170 unipCov2Interest,181 unipCov2Interest,319 unipCov2LocCytopl,25 unipCov2LocCytopl,485 unipCov2LocCytopl,489 unipCov2LocCytopl,500 unipCov2LocCytopl,619 unipCov2LocCytopl,660 unipCov2LocExtra,25 unipCov2LocExtra,485 unipCov2LocExtra,489 unipCov2LocExtra,500 unipCov2LocExtra,619 unipCov2LocExtra,660 unipCov2LocSignal,26 unipCov2LocSignal,486 unipCov2LocSignal,490 unipCov2LocSignal,501 unipCov2LocSignal,620 unipCov2LocSignal,661 unipCov2LocTransMemb,26 unipCov2LocTransMemb,486 unipCov2LocTransMemb,490 unipCov2LocTransMemb,501 unipCov2LocTransMemb,620 unipCov2LocTransMemb,661 unipCov2Modif,29 unipCov2Modif,489 unipCov2Modif,493 unipCov2Modif,504 unipCov2Modif,623 unipCov2Modif,664 unipCov2Mut,26 unipCov2Mut,486 unipCov2Mut,490 unipCov2Mut,501 unipCov2Mut,620 unipCov2Mut,661 unipCov2Other,26 unipCov2Other,486 unipCov2Other,490 unipCov2Other,501 unipCov2Other,620 unipCov2Other,661 unipCov2Repeat,24 unipCov2Repeat,484 unipCov2Repeat,488 unipCov2Repeat,499 unipCov2Repeat,618 unipCov2Repeat,659 unipCov2Struct,28 unipCov2Struct,488 unipCov2Struct,492 unipCov2Struct,503 unipCov2Struct,622 unipCov2Struct,663 vaccines,354 vaccines,630 variantMuts,972 variantMuts,979 variantMuts,990 variantMuts,1001 variantMuts,1004 variantMuts,1103 variantMuts,1175 variantMuts,1360 varskip,70 varskip,74 varskip,90 varskip,183 weizmanOrfs,36 weizmanOrfs,55 weizmanOrfs,231 weizmanOrfs,238 weizmanOrfs,271 weizmanOrfs,311 weizmanOrfs,315 weizmanOrfs,331 weizmanOrfs,345 database addgene,183 contacts,32 epitopes,217 iedb,36 iedb,118 iedb,126 microdel,25 microdel,201 rfam,22 rosettaMhc,117 rosettaMhc,195 rosettaMhc,325 ucscToINSDC,8 ucscToINSDC,30 ucscToINSDC,41 ucscToRefSeq,25 ucscToRefSeq,35 unipCov2AliSwissprot,25 unipCov2AliSwissprot,38 unipCov2AliSwissprot,459 unipCov2AliSwissprot,487 unipCov2Chain,24 unipCov2Chain,688 unipCov2Chain,716 unipCov2DisulfBond,20 unipCov2DisulfBond,684 unipCov2DisulfBond,712 unipCov2Domain,19 unipCov2Domain,683 unipCov2Domain,711 unipCov2Interest,26 unipCov2Interest,342 unipCov2Interest,370 unipCov2LocCytopl,19 unipCov2LocCytopl,683 unipCov2LocCytopl,711 unipCov2LocExtra,19 unipCov2LocExtra,683 unipCov2LocExtra,711 unipCov2LocSignal,20 unipCov2LocSignal,684 unipCov2LocSignal,712 unipCov2LocTransMemb,20 unipCov2LocTransMemb,684 unipCov2LocTransMemb,712 unipCov2Modif,23 unipCov2Modif,687 unipCov2Modif,715 unipCov2Mut,20 unipCov2Mut,684 unipCov2Mut,712 unipCov2Other,20 unipCov2Other,684 unipCov2Other,712 unipCov2Repeat,18 unipCov2Repeat,682 unipCov2Repeat,710 unipCov2Struct,22 unipCov2Struct,686 unipCov2Struct,714 databases Q0_tracks,50 Q0_tracks,814 Q0_tracks,1205 Q1_tracks,52 Q1_tracks,816 Q1_tracks,1207 Q2_tracks,52 Q2_tracks,816 Q2_tracks,1207 Q3_tracks,52 Q3_tracks,816 Q3_tracks,1207 galaxyEna,52 galaxyEna,816 galaxyEna,1207 galaxyEnaQ0Ba-1,48 galaxyEnaQ0Ba-1,812 galaxyEnaQ0Ba-1,1203 galaxyEnaQ0Ba-1-1,48 galaxyEnaQ0Ba-1-1,812 galaxyEnaQ0Ba-1-1,1203 galaxyEnaQ0Ba-1-1-11,48 galaxyEnaQ0Ba-1-1-11,812 galaxyEnaQ0Ba-1-1-11,1203 galaxyEnaQ0Ba-1-17,48 galaxyEnaQ0Ba-1-17,812 galaxyEnaQ0Ba-1-17,1203 galaxyEnaQ0Ba-2,48 galaxyEnaQ0Ba-2,812 galaxyEnaQ0Ba-2,1203 galaxyEnaQ1Ay-4,48 galaxyEnaQ1Ay-4,812 galaxyEnaQ1Ay-4,1203 galaxyEnaQ1Ay-4-2,48 galaxyEnaQ1Ay-4-2,812 galaxyEnaQ1Ay-4-2,1203 galaxyEnaQ1Ay-4-2-2,48 galaxyEnaQ1Ay-4-2-2,812 galaxyEnaQ1Ay-4-2-2,1203 galaxyEnaQ1Ay-43,48 galaxyEnaQ1Ay-43,812 galaxyEnaQ1Ay-43,1203 galaxyEnaQ1Ba-1-17,48 galaxyEnaQ1Ba-1-17,812 galaxyEnaQ1Ba-1-17,1203 galaxyEnaQ2Ay-120,48 galaxyEnaQ2Ay-120,812 galaxyEnaQ2Ay-120,1203 galaxyEnaQ2Ay-122,48 galaxyEnaQ2Ay-122,812 galaxyEnaQ2Ay-122,1203 galaxyEnaQ2Ay-4,48 galaxyEnaQ2Ay-4,812 galaxyEnaQ2Ay-4,1203 galaxyEnaQ2Ay-5,48 galaxyEnaQ2Ay-5,812 galaxyEnaQ2Ay-5,1203 galaxyEnaQ2Ay-6,48 galaxyEnaQ2Ay-6,812 galaxyEnaQ2Ay-6,1203 galaxyEnaQ3Ay-4,48 galaxyEnaQ3Ay-4,812 galaxyEnaQ3Ay-4,1203 galaxyEnaQ3Ay-5,48 galaxyEnaQ3Ay-5,812 galaxyEnaQ3Ay-5,1203 galaxyEnaQ3Ay-9,48 galaxyEnaQ3Ay-9,812 galaxyEnaQ3Ay-9,1203 galaxyEnaQ3B-1-1-7,48 galaxyEnaQ3B-1-1-7,812 galaxyEnaQ3B-1-1-7,1203 galaxyEnaQ3B-1-617-2,48 galaxyEnaQ3B-1-617-2,812 galaxyEnaQ3B-1-617-2,1203 sarsCov2PhyloPub,13 sarsCov2PhyloPub,723 sarsCov2PhyloPub,954 dataset pond,41 resistPred,250 datasets Calu3_07hpi,322 IgG_Z-score-_COVID-19_patients,298 IgM_Z-score-_COVID-19_patients,298 ORFs,320 PhyloCSF_smooth,640 Starr_Bloom,214 Starr_Bloom_bind,208 Vero6_05hpi,322 Vero6_24hpi,322 abEscape,666 artic,81 articV4,81 articV4_1,94 bloomEscMabAvg,670 bloomEscMax,676 bloomEscSerumAvg,671 bloomEscTop,674 bpmIggCovidSum,307 bpmIgmCovidSum,307 cas13Crispr,366 contacts,294 escape,673 kimRnaMod,128 kimTranscripts,345 mccoy,666 microdel,153 pbm,307 pbmShanghai,424 phyloGenes,342 poranHla1,155 poranHla2,155 publicAnnots,98 rapid,235 rappuoli,673 swift,164 transcriptome,351 varskip,87 weizmanOrfs,328 date Q0_tracks,100 Q0_tracks,330 Q0_tracks,341 Q0_tracks,608 Q0_tracks,639 Q0_tracks,1080 Q1_tracks,102 Q1_tracks,332 Q1_tracks,343 Q1_tracks,610 Q1_tracks,641 Q1_tracks,1082 Q2_tracks,102 Q2_tracks,332 Q2_tracks,343 Q2_tracks,610 Q2_tracks,641 Q2_tracks,1082 Q3_tracks,102 Q3_tracks,332 Q3_tracks,343 Q3_tracks,610 Q3_tracks,641 Q3_tracks,1082 galaxyEna,102 galaxyEna,332 galaxyEna,343 galaxyEna,610 galaxyEna,641 galaxyEna,1082 galaxyEnaQ0Ba-1,98 galaxyEnaQ0Ba-1,328 galaxyEnaQ0Ba-1,339 galaxyEnaQ0Ba-1,606 galaxyEnaQ0Ba-1,637 galaxyEnaQ0Ba-1,1078 galaxyEnaQ0Ba-1-1,98 galaxyEnaQ0Ba-1-1,328 galaxyEnaQ0Ba-1-1,339 galaxyEnaQ0Ba-1-1,606 galaxyEnaQ0Ba-1-1,637 galaxyEnaQ0Ba-1-1,1078 galaxyEnaQ0Ba-1-1-11,98 galaxyEnaQ0Ba-1-1-11,328 galaxyEnaQ0Ba-1-1-11,339 galaxyEnaQ0Ba-1-1-11,606 galaxyEnaQ0Ba-1-1-11,637 galaxyEnaQ0Ba-1-1-11,1078 galaxyEnaQ0Ba-1-17,98 galaxyEnaQ0Ba-1-17,328 galaxyEnaQ0Ba-1-17,339 galaxyEnaQ0Ba-1-17,606 galaxyEnaQ0Ba-1-17,637 galaxyEnaQ0Ba-1-17,1078 galaxyEnaQ0Ba-2,98 galaxyEnaQ0Ba-2,328 galaxyEnaQ0Ba-2,339 galaxyEnaQ0Ba-2,606 galaxyEnaQ0Ba-2,637 galaxyEnaQ0Ba-2,1078 galaxyEnaQ1Ay-4,98 galaxyEnaQ1Ay-4,328 galaxyEnaQ1Ay-4,339 galaxyEnaQ1Ay-4,606 galaxyEnaQ1Ay-4,637 galaxyEnaQ1Ay-4,1078 galaxyEnaQ1Ay-4-2,98 galaxyEnaQ1Ay-4-2,328 galaxyEnaQ1Ay-4-2,339 galaxyEnaQ1Ay-4-2,606 galaxyEnaQ1Ay-4-2,637 galaxyEnaQ1Ay-4-2,1078 galaxyEnaQ1Ay-4-2-2,98 galaxyEnaQ1Ay-4-2-2,328 galaxyEnaQ1Ay-4-2-2,339 galaxyEnaQ1Ay-4-2-2,606 galaxyEnaQ1Ay-4-2-2,637 galaxyEnaQ1Ay-4-2-2,1078 galaxyEnaQ1Ay-43,98 galaxyEnaQ1Ay-43,328 galaxyEnaQ1Ay-43,339 galaxyEnaQ1Ay-43,606 galaxyEnaQ1Ay-43,637 galaxyEnaQ1Ay-43,1078 galaxyEnaQ1Ba-1-17,98 galaxyEnaQ1Ba-1-17,328 galaxyEnaQ1Ba-1-17,339 galaxyEnaQ1Ba-1-17,606 galaxyEnaQ1Ba-1-17,637 galaxyEnaQ1Ba-1-17,1078 galaxyEnaQ2Ay-120,98 galaxyEnaQ2Ay-120,328 galaxyEnaQ2Ay-120,339 galaxyEnaQ2Ay-120,606 galaxyEnaQ2Ay-120,637 galaxyEnaQ2Ay-120,1078 galaxyEnaQ2Ay-122,98 galaxyEnaQ2Ay-122,328 galaxyEnaQ2Ay-122,339 galaxyEnaQ2Ay-122,606 galaxyEnaQ2Ay-122,637 galaxyEnaQ2Ay-122,1078 galaxyEnaQ2Ay-4,98 galaxyEnaQ2Ay-4,328 galaxyEnaQ2Ay-4,339 galaxyEnaQ2Ay-4,606 galaxyEnaQ2Ay-4,637 galaxyEnaQ2Ay-4,1078 galaxyEnaQ2Ay-5,98 galaxyEnaQ2Ay-5,328 galaxyEnaQ2Ay-5,339 galaxyEnaQ2Ay-5,606 galaxyEnaQ2Ay-5,637 galaxyEnaQ2Ay-5,1078 galaxyEnaQ2Ay-6,98 galaxyEnaQ2Ay-6,328 galaxyEnaQ2Ay-6,339 galaxyEnaQ2Ay-6,606 galaxyEnaQ2Ay-6,637 galaxyEnaQ2Ay-6,1078 galaxyEnaQ3Ay-4,98 galaxyEnaQ3Ay-4,328 galaxyEnaQ3Ay-4,339 galaxyEnaQ3Ay-4,606 galaxyEnaQ3Ay-4,637 galaxyEnaQ3Ay-4,1078 galaxyEnaQ3Ay-5,98 galaxyEnaQ3Ay-5,328 galaxyEnaQ3Ay-5,339 galaxyEnaQ3Ay-5,606 galaxyEnaQ3Ay-5,637 galaxyEnaQ3Ay-5,1078 galaxyEnaQ3Ay-9,98 galaxyEnaQ3Ay-9,328 galaxyEnaQ3Ay-9,339 galaxyEnaQ3Ay-9,606 galaxyEnaQ3Ay-9,637 galaxyEnaQ3Ay-9,1078 galaxyEnaQ3B-1-1-7,98 galaxyEnaQ3B-1-1-7,328 galaxyEnaQ3B-1-1-7,339 galaxyEnaQ3B-1-1-7,606 galaxyEnaQ3B-1-1-7,637 galaxyEnaQ3B-1-1-7,1078 galaxyEnaQ3B-1-617-2,98 galaxyEnaQ3B-1-617-2,328 galaxyEnaQ3B-1-617-2,339 galaxyEnaQ3B-1-617-2,606 galaxyEnaQ3B-1-617-2,637 galaxyEnaQ3B-1-617-2,1078 nextstrainSamples,859 spikeMuts,151 dates sarsCov2PhyloPub,765 variantMuts,814 daved abEscape,797 bloomEscMabAvg,801 bloomEscMax,807 bloomEscSerumAvg,802 bloomEscTop,805 escape,804 mccoy,797 rappuoli,804 david contacts,405 davidson PhyloCSF_smooth,744 PhyloCSFpower,710 day A_120Max,3 A_120Total,3 A_120Total,12 A_21Max,3 A_21Total,3 A_21Total,12 A_45Max,3 A_45Total,3 A_45Total,12 B_113Max,3 B_113Total,3 B_113Total,12 B_26Max,3 B_26Total,3 B_26Total,12 C_104Max,3 C_104Total,3 C_104Total,12 C_32Max,3 C_32Total,3 C_32Total,12 D_33Max,3 D_33Total,3 D_33Total,12 D_76Max,3 D_76Total,3 D_76Total,12 E_104Max,3 E_104Total,3 E_104Total,12 E_28Max,3 E_28Total,3 E_28Total,12 F_115Max,3 F_115Total,3 F_115Total,12 F_48Max,3 F_48Total,3 F_48Total,12 G_18Max,3 G_18Total,3 G_18Total,12 G_94Max,3 G_94Total,3 G_94Total,12 H_152Max,3 H_152Total,3 H_152Total,12 H_61Max,3 H_61Total,3 H_61Total,12 I_102Max,3 I_102Total,3 I_102Total,12 I_26Max,3 I_26Total,3 I_26Total,12 J_121Max,3 J_121Total,3 J_121Total,12 J_15Max,3 J_15Total,3 J_15Total,12 K_103Max,3 K_103Total,3 K_103Total,12 K_29Max,3 K_29Total,3 K_29Total,12 Q0_tracks,324 Q0_tracks,350 Q1_tracks,326 Q1_tracks,352 Q2_tracks,326 Q2_tracks,352 Q3_tracks,326 Q3_tracks,352 galaxyEna,326 galaxyEna,352 galaxyEnaQ0Ba-1,322 galaxyEnaQ0Ba-1,348 galaxyEnaQ0Ba-1-1,322 galaxyEnaQ0Ba-1-1,348 galaxyEnaQ0Ba-1-1-11,322 galaxyEnaQ0Ba-1-1-11,348 galaxyEnaQ0Ba-1-17,322 galaxyEnaQ0Ba-1-17,348 galaxyEnaQ0Ba-2,322 galaxyEnaQ0Ba-2,348 galaxyEnaQ1Ay-4,322 galaxyEnaQ1Ay-4,348 galaxyEnaQ1Ay-4-2,322 galaxyEnaQ1Ay-4-2,348 galaxyEnaQ1Ay-4-2-2,322 galaxyEnaQ1Ay-4-2-2,348 galaxyEnaQ1Ay-43,322 galaxyEnaQ1Ay-43,348 galaxyEnaQ1Ba-1-17,322 galaxyEnaQ1Ba-1-17,348 galaxyEnaQ2Ay-120,322 galaxyEnaQ2Ay-120,348 galaxyEnaQ2Ay-122,322 galaxyEnaQ2Ay-122,348 galaxyEnaQ2Ay-4,322 galaxyEnaQ2Ay-4,348 galaxyEnaQ2Ay-5,322 galaxyEnaQ2Ay-5,348 galaxyEnaQ2Ay-6,322 galaxyEnaQ2Ay-6,348 galaxyEnaQ3Ay-4,322 galaxyEnaQ3Ay-4,348 galaxyEnaQ3Ay-5,322 galaxyEnaQ3Ay-5,348 galaxyEnaQ3Ay-9,322 galaxyEnaQ3Ay-9,348 galaxyEnaQ3B-1-1-7,322 galaxyEnaQ3B-1-1-7,348 galaxyEnaQ3B-1-617-2,322 galaxyEnaQ3B-1-617-2,348 days publicAnnots,42 de augustusGene,303 problematicSites,403 problematicSites,408 problematicSites,538 problematicSites,560 pyle,58 recomb,267 recomb,336 sarsCov2Phylo,622 sarsCov2Phylo,1049 sarsCov2Phylo,1071 sarsCov2PhyloPub,649 sarsCov2PhyloPub,1169 sarsCov2PhyloPub,1191 sarsCov2PhyloPub,1224 variantMuts,1427 deactivating recomb,60 deadly potPathoIndel,34 deamination cpgIslandExt,110 cpgIslandExtUnmasked,113 cpgIslandSuper,110 dec PhyloCSF_smooth,773 abEscape,855 abEscape,902 bloomEscMabAvg,859 bloomEscMabAvg,906 bloomEscMax,865 bloomEscMax,912 bloomEscSerumAvg,860 bloomEscSerumAvg,907 bloomEscTop,863 bloomEscTop,910 escape,862 escape,909 mccoy,855 mccoy,902 nextstrainClade,268 nextstrainFreq,403 nextstrainGene,217 nextstrainParsimony,470 nextstrainSamples,1023 rappuoli,862 rappuoli,909 vaccines,543 variantMuts,402 variantMuts,519 variantMuts,632 variantMuts,679 variantMuts,1322 variantMuts,1363 dec-2020 variantAaMutsV2_B_1_351,8 variantAaMutsV2_B_1_525,7 variantNucMutsV2_B_1_351,8 variantNucMutsV2_B_1_525,7 december variantMuts,39 variantMuts,1112 variantMuts,1368 variantMuts,1415 decided Q0_tracks,1191 Q1_tracks,1193 Q2_tracks,1193 Q3_tracks,1193 galaxyEna,1193 galaxyEnaQ0Ba-1,1189 galaxyEnaQ0Ba-1-1,1189 galaxyEnaQ0Ba-1-1-11,1189 galaxyEnaQ0Ba-1-17,1189 galaxyEnaQ0Ba-2,1189 galaxyEnaQ1Ay-4,1189 galaxyEnaQ1Ay-4-2,1189 galaxyEnaQ1Ay-4-2-2,1189 galaxyEnaQ1Ay-43,1189 galaxyEnaQ1Ba-1-17,1189 galaxyEnaQ2Ay-120,1189 galaxyEnaQ2Ay-122,1189 galaxyEnaQ2Ay-4,1189 galaxyEnaQ2Ay-5,1189 galaxyEnaQ2Ay-6,1189 galaxyEnaQ3Ay-4,1189 galaxyEnaQ3Ay-5,1189 galaxyEnaQ3Ay-9,1189 galaxyEnaQ3B-1-1-7,1189 galaxyEnaQ3B-1-617-2,1189 decreased variantMuts,108 decreasing IgG_Z-score-_COVID-19_patients,146 IgM_Z-score-_COVID-19_patients,146 bpmIggCovidSum,155 bpmIgmCovidSum,155 pbm,155 decribed cd8escape,181 deep Starr_Bloom,6 Starr_Bloom,19 Starr_Bloom,260 Starr_Bloom_bind,6 Starr_Bloom_bind,20 Starr_Bloom_bind,254 abEscape,66 bloomEscMabAvg,70 bloomEscMax,76 bloomEscSerumAvg,71 bloomEscTop,74 cd8escape,90 cd8escape,136 escape,73 mccoy,66 rappuoli,73 default IgG_Z-score-_COVID-19_patients,98 IgM_Z-score-_COVID-19_patients,98 Q0_tracks,730 Q0_tracks,756 Q1_tracks,732 Q1_tracks,758 Q2_tracks,732 Q2_tracks,758 Q3_tracks,732 Q3_tracks,758 bpmIggCovidSum,107 bpmIgmCovidSum,107 cpgIslandExt,195 cpgIslandExtUnmasked,198 cpgIslandSuper,195 galaxyEna,732 galaxyEna,758 galaxyEnaQ0Ba-1,728 galaxyEnaQ0Ba-1,754 galaxyEnaQ0Ba-1-1,728 galaxyEnaQ0Ba-1-1,754 galaxyEnaQ0Ba-1-1-11,728 galaxyEnaQ0Ba-1-1-11,754 galaxyEnaQ0Ba-1-17,728 galaxyEnaQ0Ba-1-17,754 galaxyEnaQ0Ba-2,728 galaxyEnaQ0Ba-2,754 galaxyEnaQ1Ay-4,728 galaxyEnaQ1Ay-4,754 galaxyEnaQ1Ay-4-2,728 galaxyEnaQ1Ay-4-2,754 galaxyEnaQ1Ay-4-2-2,728 galaxyEnaQ1Ay-4-2-2,754 galaxyEnaQ1Ay-43,728 galaxyEnaQ1Ay-43,754 galaxyEnaQ1Ba-1-17,728 galaxyEnaQ1Ba-1-17,754 galaxyEnaQ2Ay-120,728 galaxyEnaQ2Ay-120,754 galaxyEnaQ2Ay-122,728 galaxyEnaQ2Ay-122,754 galaxyEnaQ2Ay-4,728 galaxyEnaQ2Ay-4,754 galaxyEnaQ2Ay-5,728 galaxyEnaQ2Ay-5,754 galaxyEnaQ2Ay-6,728 galaxyEnaQ2Ay-6,754 galaxyEnaQ3Ay-4,728 galaxyEnaQ3Ay-4,754 galaxyEnaQ3Ay-5,728 galaxyEnaQ3Ay-5,754 galaxyEnaQ3Ay-9,728 galaxyEnaQ3Ay-9,754 galaxyEnaQ3B-1-1-7,728 galaxyEnaQ3B-1-1-7,754 galaxyEnaQ3B-1-617-2,728 galaxyEnaQ3B-1-617-2,754 multiz7way,283 multiz7way,468 multiz7way,482 multiz7way,537 multiz7way,567 nextstrainSamples,236 nextstrainSamples,504 pbm,107 pbmShanghai,164 pyle,209 recomb,49 rosettaMhc,288 sarsCov2Phylo,41 sarsCov2Phylo,519 sarsCov2PhyloPub,55 sarsCov2PhyloPub,544 strainCons119way,636 strainCons119way,818 strainCons119way,832 strainCons119way,887 strainCons119way,917 strainCons44way,584 strainCons44way,766 strainCons44way,780 strainCons44way,835 strainCons44way,865 unipCov2Chain,110 unipCov2DisulfBond,106 unipCov2Domain,105 unipCov2LocCytopl,105 unipCov2LocExtra,105 unipCov2LocSignal,106 unipCov2LocTransMemb,106 unipCov2Modif,109 unipCov2Mut,106 unipCov2Other,106 unipCov2Repeat,104 unipCov2Struct,108 defaults multiz7way,287 strainCons119way,639 strainCons44way,587 defects icshape,57 define nextstrainClade,137 defined pbmShanghai,293 unipCov2Interest,17 variantMuts,37 variantMuts,1312 defines PhyloCSF_smooth,549 PhyloCSFpower,564 nextstrainClade,57 defining Q0_tracks,449 Q1_tracks,451 Q2_tracks,451 Q3_tracks,451 galaxyEna,451 galaxyEnaQ0Ba-1,447 galaxyEnaQ0Ba-1-1,447 galaxyEnaQ0Ba-1-1-11,447 galaxyEnaQ0Ba-1-17,447 galaxyEnaQ0Ba-2,447 galaxyEnaQ1Ay-4,447 galaxyEnaQ1Ay-4-2,447 galaxyEnaQ1Ay-4-2-2,447 galaxyEnaQ1Ay-43,447 galaxyEnaQ1Ba-1-17,447 galaxyEnaQ2Ay-120,447 galaxyEnaQ2Ay-122,447 galaxyEnaQ2Ay-4,447 galaxyEnaQ2Ay-5,447 galaxyEnaQ2Ay-6,447 galaxyEnaQ3Ay-4,447 galaxyEnaQ3Ay-5,447 galaxyEnaQ3Ay-9,447 galaxyEnaQ3B-1-1-7,447 galaxyEnaQ3B-1-617-2,447 nextstrainSamples,183 definition gap,39 gold,41 degenerate strainCons119way,1735 strainCons44way,1330 dehal sarsCov2Phylo,1123 sarsCov2PhyloPub,1256 del variantMuts,767 del_21991 variantMuts,778 deletion microdel,35 multiz7way,1140 sarsCov2Phylo,775 strainCons119way,2518 strainCons44way,2113 deletions Q0_tracks,525 Q1_tracks,527 Q2_tracks,527 Q3_tracks,527 contacts,268 galaxyEna,527 galaxyEnaQ0Ba-1,523 galaxyEnaQ0Ba-1-1,523 galaxyEnaQ0Ba-1-1-11,523 galaxyEnaQ0Ba-1-17,523 galaxyEnaQ0Ba-2,523 galaxyEnaQ1Ay-4,523 galaxyEnaQ1Ay-4-2,523 galaxyEnaQ1Ay-4-2-2,523 galaxyEnaQ1Ay-43,523 galaxyEnaQ1Ba-1-17,523 galaxyEnaQ2Ay-120,523 galaxyEnaQ2Ay-122,523 galaxyEnaQ2Ay-4,523 galaxyEnaQ2Ay-5,523 galaxyEnaQ2Ay-6,523 galaxyEnaQ3Ay-4,523 galaxyEnaQ3Ay-5,523 galaxyEnaQ3Ay-9,523 galaxyEnaQ3B-1-1-7,523 galaxyEnaQ3B-1-617-2,523 microdel,13 microdel,39 microdel,47 microdel,55 microdel,111 nextstrainSamples,444 potPathoIndel,8 sarsCov2Phylo,486 sarsCov2PhyloPub,515 variantMuts,761 delimited gordon2,177 delivered gap,51 gold,50 delta nextstrainFreq21A_Delta,2 nextstrainFreq21A_Delta,5 nextstrainFreq21I_Delta,2 nextstrainFreq21I_Delta,5 nextstrainFreq21J_Delta,2 nextstrainFreq21J_Delta,5 nextstrainSamples21A_Delta,2 nextstrainSamples21A_Delta,8 nextstrainSamples21I_Delta,2 nextstrainSamples21I_Delta,8 nextstrainSamples21J_Delta,2 nextstrainSamples21J_Delta,8 variantAaMutsV2_B_1_617_2,1 variantAaMutsV2_B_1_617_2,4 variantMuts,320 variantMuts,886 variantMuts,932 variantMuts,944 variantMuts,1055 variantNucMutsV2_B_1_617_2,1 variantNucMutsV2_B_1_617_2,4 deltails unipCov2Interest,68 demonstrate targets,79 den Q0_tracks,1232 Q0_tracks,1302 Q1_tracks,1234 Q1_tracks,1304 Q2_tracks,1234 Q2_tracks,1304 Q3_tracks,1234 Q3_tracks,1304 galaxyEna,1234 galaxyEna,1304 galaxyEnaQ0Ba-1,1230 galaxyEnaQ0Ba-1,1300 galaxyEnaQ0Ba-1-1,1230 galaxyEnaQ0Ba-1-1,1300 galaxyEnaQ0Ba-1-1-11,1230 galaxyEnaQ0Ba-1-1-11,1300 galaxyEnaQ0Ba-1-17,1230 galaxyEnaQ0Ba-1-17,1300 galaxyEnaQ0Ba-2,1230 galaxyEnaQ0Ba-2,1300 galaxyEnaQ1Ay-4,1230 galaxyEnaQ1Ay-4,1300 galaxyEnaQ1Ay-4-2,1230 galaxyEnaQ1Ay-4-2,1300 galaxyEnaQ1Ay-4-2-2,1230 galaxyEnaQ1Ay-4-2-2,1300 galaxyEnaQ1Ay-43,1230 galaxyEnaQ1Ay-43,1300 galaxyEnaQ1Ba-1-17,1230 galaxyEnaQ1Ba-1-17,1300 galaxyEnaQ2Ay-120,1230 galaxyEnaQ2Ay-120,1300 galaxyEnaQ2Ay-122,1230 galaxyEnaQ2Ay-122,1300 galaxyEnaQ2Ay-4,1230 galaxyEnaQ2Ay-4,1300 galaxyEnaQ2Ay-5,1230 galaxyEnaQ2Ay-5,1300 galaxyEnaQ2Ay-6,1230 galaxyEnaQ2Ay-6,1300 galaxyEnaQ3Ay-4,1230 galaxyEnaQ3Ay-4,1300 galaxyEnaQ3Ay-5,1230 galaxyEnaQ3Ay-5,1300 galaxyEnaQ3Ay-9,1230 galaxyEnaQ3Ay-9,1300 galaxyEnaQ3B-1-1-7,1230 galaxyEnaQ3B-1-1-7,1300 galaxyEnaQ3B-1-617-2,1230 galaxyEnaQ3B-1-617-2,1300 denied nextstrainSamples,829 dennis microdel,290 dense IgG_Z-score-_COVID-19_patients,100 IgM_Z-score-_COVID-19_patients,100 Q0_tracks,549 Q1_tracks,551 Q2_tracks,551 Q3_tracks,551 bpmIggCovidSum,109 bpmIgmCovidSum,109 galaxyEna,551 galaxyEnaQ0Ba-1,547 galaxyEnaQ0Ba-1-1,547 galaxyEnaQ0Ba-1-1-11,547 galaxyEnaQ0Ba-1-17,547 galaxyEnaQ0Ba-2,547 galaxyEnaQ1Ay-4,547 galaxyEnaQ1Ay-4-2,547 galaxyEnaQ1Ay-4-2-2,547 galaxyEnaQ1Ay-43,547 galaxyEnaQ1Ba-1-17,547 galaxyEnaQ2Ay-120,547 galaxyEnaQ2Ay-122,547 galaxyEnaQ2Ay-4,547 galaxyEnaQ2Ay-5,547 galaxyEnaQ2Ay-6,547 galaxyEnaQ3Ay-4,547 galaxyEnaQ3Ay-5,547 galaxyEnaQ3Ay-9,547 galaxyEnaQ3B-1-1-7,547 galaxyEnaQ3B-1-617-2,547 gold,67 multiz7way,127 nextstrainSamples,305 pbm,109 pbmShanghai,166 sarsCov2Phylo,310 sarsCov2PhyloPub,317 strainCons119way,476 strainCons44way,424 density recomb,45 recomb,53 recomb,63 dependencies genscan,183 depending problematicSites,467 transcriptome,211 vaccines,117 depends abEscape,328 bloomEscMabAvg,332 bloomEscMax,338 bloomEscSerumAvg,333 bloomEscTop,336 escape,335 mccoy,328 rappuoli,335 depict kimTranscripts,93 transcriptome,85 depicted nextstrainSamples,467 sarsCov2Phylo,497 sarsCov2PhyloPub,526 depicts gold,71 windowmaskerSdust,15 deposited Q0_tracks,47 Q0_tracks,61 Q1_tracks,49 Q1_tracks,63 Q2_tracks,49 Q2_tracks,63 Q3_tracks,49 Q3_tracks,63 galaxyEna,49 galaxyEna,63 galaxyEnaQ0Ba-1,45 galaxyEnaQ0Ba-1,59 galaxyEnaQ0Ba-1-1,45 galaxyEnaQ0Ba-1-1,59 galaxyEnaQ0Ba-1-1-11,45 galaxyEnaQ0Ba-1-1-11,59 galaxyEnaQ0Ba-1-17,45 galaxyEnaQ0Ba-1-17,59 galaxyEnaQ0Ba-2,45 galaxyEnaQ0Ba-2,59 galaxyEnaQ1Ay-4,45 galaxyEnaQ1Ay-4,59 galaxyEnaQ1Ay-4-2,45 galaxyEnaQ1Ay-4-2,59 galaxyEnaQ1Ay-4-2-2,45 galaxyEnaQ1Ay-4-2-2,59 galaxyEnaQ1Ay-43,45 galaxyEnaQ1Ay-43,59 galaxyEnaQ1Ba-1-17,45 galaxyEnaQ1Ba-1-17,59 galaxyEnaQ2Ay-120,45 galaxyEnaQ2Ay-120,59 galaxyEnaQ2Ay-122,45 galaxyEnaQ2Ay-122,59 galaxyEnaQ2Ay-4,45 galaxyEnaQ2Ay-4,59 galaxyEnaQ2Ay-5,45 galaxyEnaQ2Ay-5,59 galaxyEnaQ2Ay-6,45 galaxyEnaQ2Ay-6,59 galaxyEnaQ3Ay-4,45 galaxyEnaQ3Ay-4,59 galaxyEnaQ3Ay-5,45 galaxyEnaQ3Ay-5,59 galaxyEnaQ3Ay-9,45 galaxyEnaQ3Ay-9,59 galaxyEnaQ3B-1-1-7,45 galaxyEnaQ3B-1-1-7,59 galaxyEnaQ3B-1-617-2,45 galaxyEnaQ3B-1-617-2,59 depositing Q0_tracks,1201 Q1_tracks,1203 Q2_tracks,1203 Q3_tracks,1203 galaxyEna,1203 galaxyEnaQ0Ba-1,1199 galaxyEnaQ0Ba-1-1,1199 galaxyEnaQ0Ba-1-1-11,1199 galaxyEnaQ0Ba-1-17,1199 galaxyEnaQ0Ba-2,1199 galaxyEnaQ1Ay-4,1199 galaxyEnaQ1Ay-4-2,1199 galaxyEnaQ1Ay-4-2-2,1199 galaxyEnaQ1Ay-43,1199 galaxyEnaQ1Ba-1-17,1199 galaxyEnaQ2Ay-120,1199 galaxyEnaQ2Ay-122,1199 galaxyEnaQ2Ay-4,1199 galaxyEnaQ2Ay-5,1199 galaxyEnaQ2Ay-6,1199 galaxyEnaQ3Ay-4,1199 galaxyEnaQ3Ay-5,1199 galaxyEnaQ3Ay-9,1199 galaxyEnaQ3B-1-1-7,1199 galaxyEnaQ3B-1-617-2,1199 depth icshape,70 pyle,56 derive rosettaMhc,74 derived Entropy,5 IgG_Z-score-_COVID-19_patients,26 IgM_Z-score-_COVID-19_patients,26 bpmIggCovidSum,35 bpmIgmCovidSum,35 cas13Crispr,218 nextstrainFreq,324 nextstrainSamples,669 pbm,35 pbmShanghai,38 pyle,158 resistPred,60 strainCons119way,1747 strainCons44way,1342 described PhyloCSF_smooth,368 PhyloCSFpower,383 abEscape,107 abEscape,124 abEscape,147 abEscape,180 abEscape,207 abEscape,224 addgene,48 bloomEscMabAvg,111 bloomEscMabAvg,128 bloomEscMabAvg,151 bloomEscMabAvg,184 bloomEscMabAvg,211 bloomEscMabAvg,228 bloomEscMax,117 bloomEscMax,134 bloomEscMax,157 bloomEscMax,190 bloomEscMax,217 bloomEscMax,234 bloomEscSerumAvg,112 bloomEscSerumAvg,129 bloomEscSerumAvg,152 bloomEscSerumAvg,185 bloomEscSerumAvg,212 bloomEscSerumAvg,229 bloomEscTop,115 bloomEscTop,132 bloomEscTop,155 bloomEscTop,188 bloomEscTop,215 bloomEscTop,232 cas13Crispr,25 contacts,119 escape,114 escape,131 escape,154 escape,187 escape,214 escape,231 genscan,161 mccoy,107 mccoy,124 mccoy,147 mccoy,180 mccoy,207 mccoy,224 pbmShanghai,137 pyle,54 rapid,129 rappuoli,114 rappuoli,131 rappuoli,154 rappuoli,187 rappuoli,214 rappuoli,231 recomb,33 describes augustusGene,226 gap,60 gold,59 nextstrainSamples,842 strainCons119way,1802 strainCons44way,1397 describing pyle,27 description Calu3_07hpi,12 IgG_Z-score-_COVID-19_patients,14 IgM_Z-score-_COVID-19_patients,14 ORFs,10 PhyloCSF_smooth,5 PhyloCSFpower,20 Q0_tracks,18 Q1_tracks,20 Q2_tracks,20 Q3_tracks,20 Starr_Bloom,15 Starr_Bloom_bind,16 Vero6_05hpi,12 Vero6_24hpi,12 abEscape,15 abEscape,562 addgene,13 addgene,59 addgene,138 artic,13 articV4,13 articV4_1,13 augustusGene,12 bloomEscMabAvg,19 bloomEscMabAvg,566 bloomEscMax,25 bloomEscMax,572 bloomEscSerumAvg,20 bloomEscSerumAvg,567 bloomEscTop,23 bloomEscTop,570 bpmIggCovidSum,23 bpmIgmCovidSum,23 cas13Crispr,9 cd8escape,17 cd8escape,176 contacts,17 cpgIslandExt,14 cpgIslandExtUnmasked,17 cpgIslandSuper,14 crisprDet,9 epitopes,11 escape,22 escape,569 galaxyEna,20 galaxyEnaQ0Ba-1,16 galaxyEnaQ0Ba-1-1,16 galaxyEnaQ0Ba-1-1-11,16 galaxyEnaQ0Ba-1-17,16 galaxyEnaQ0Ba-2,16 galaxyEnaQ1Ay-4,16 galaxyEnaQ1Ay-4-2,16 galaxyEnaQ1Ay-4-2-2,16 galaxyEnaQ1Ay-43,16 galaxyEnaQ1Ba-1-17,16 galaxyEnaQ2Ay-120,16 galaxyEnaQ2Ay-122,16 galaxyEnaQ2Ay-4,16 galaxyEnaQ2Ay-5,16 galaxyEnaQ2Ay-6,16 galaxyEnaQ3Ay-4,16 galaxyEnaQ3Ay-5,16 galaxyEnaQ3Ay-9,16 galaxyEnaQ3B-1-1-7,16 galaxyEnaQ3B-1-617-2,16 gap,7 gc5BaseBw,11 genscan,10 genscan,77 genscan,133 gold,8 gordon2,15 icshape,10 iedb,10 kimIvtCov,17 kimNp,18 kimRnaMod,26 kimTranscripts,18 mccoy,15 mccoy,562 microdel,9 multiz7way,15 ncbiGeneBGP,11 ncbiProducts,13 nextstrainClade,14 nextstrainFreq,11 nextstrainGene,12 nextstrainParsimony,14 nextstrainSamples,14 pbm,23 pbmShanghai,26 pdb,13 phyloGenes,12 phyloGenes,57 phyloGenes,66 pond,16 poranHla1,8 poranHla1,131 poranHla2,8 poranHla2,131 potPathoIndel,18 primers,11 problematicSites,16 publicAnnots,13 pyle,14 rapid,15 rappuoli,22 rappuoli,569 recomb,13 resist,15 resist,83 resistPred,23 rnaStructRangan,11 rosettaMhc,11 rosettaMhc,197 rosettaMhc,346 sarsCov2Phylo,19 sarsCov2PhyloPub,17 simpleRepeat,11 spikeMuts,14 strainCons119way,41 strainCons44way,38 swift,10 targets,11 transcriptome,10 treangen,15 ucscToINSDC,13 ucscToRefSeq,8 unipCov2AliSwissprot,14 unipCov2Chain,13 unipCov2Chain,60 unipCov2Chain,120 unipCov2DisulfBond,9 unipCov2DisulfBond,56 unipCov2DisulfBond,116 unipCov2Domain,8 unipCov2Domain,55 unipCov2Domain,115 unipCov2Interest,10 unipCov2LocCytopl,8 unipCov2LocCytopl,55 unipCov2LocCytopl,115 unipCov2LocExtra,8 unipCov2LocExtra,55 unipCov2LocExtra,115 unipCov2LocSignal,9 unipCov2LocSignal,56 unipCov2LocSignal,116 unipCov2LocTransMemb,9 unipCov2LocTransMemb,56 unipCov2LocTransMemb,116 unipCov2Modif,12 unipCov2Modif,59 unipCov2Modif,119 unipCov2Mut,9 unipCov2Mut,56 unipCov2Mut,116 unipCov2Other,9 unipCov2Other,56 unipCov2Other,116 unipCov2Repeat,7 unipCov2Repeat,54 unipCov2Repeat,114 unipCov2Struct,11 unipCov2Struct,58 unipCov2Struct,118 vaccines,11 variantMuts,24 varskip,13 weizmanOrfs,18 windowmaskerSdust,12 descriptions augustusGene,91 descriptive multiz7way,698 strainCons119way,422 strainCons119way,1047 strainCons44way,370 strainCons44way,995 deselect multiz7way,275 strainCons119way,626 strainCons44way,574 design cas13Crispr,15 cas13Crispr,194 primers,51 designated variantMuts,1070 designations nextstrainClade,6 variantMuts,252 designed primers,213 rapid,124 swift,63 desired multiz7way,421 destined unipCov2Chain,129 unipCov2DisulfBond,125 unipCov2Domain,124 unipCov2LocCytopl,124 unipCov2LocExtra,124 unipCov2LocSignal,125 unipCov2LocTransMemb,125 unipCov2Modif,128 unipCov2Mut,125 unipCov2Other,125 unipCov2Repeat,123 unipCov2Struct,127 detail genscan,164 kimRnaMod,69 pdb,82 poranHla1,115 poranHla2,115 detailed abEscape,246 addgene,58 augustusGene,90 bloomEscMabAvg,250 bloomEscMax,256 bloomEscSerumAvg,251 bloomEscTop,254 cd8escape,175 escape,253 mccoy,246 multiz7way,299 nextstrainFreq,109 nextstrainGene,53 nextstrainSamples,68 rappuoli,253 rosettaMhc,122 strainCons119way,642 strainCons44way,590 transcriptome,224 details Calu3_07hpi,296 ORFs,294 Q0_tracks,542 Q0_tracks,559 Q1_tracks,544 Q1_tracks,561 Q2_tracks,544 Q2_tracks,561 Q3_tracks,544 Q3_tracks,561 Vero6_05hpi,296 Vero6_24hpi,296 abEscape,488 bloomEscMabAvg,492 bloomEscMax,498 bloomEscSerumAvg,493 bloomEscTop,496 contacts,88 escape,20 escape,495 galaxyEna,544 galaxyEna,561 galaxyEnaQ0Ba-1,540 galaxyEnaQ0Ba-1,557 galaxyEnaQ0Ba-1-1,540 galaxyEnaQ0Ba-1-1,557 galaxyEnaQ0Ba-1-1-11,540 galaxyEnaQ0Ba-1-1-11,557 galaxyEnaQ0Ba-1-17,540 galaxyEnaQ0Ba-1-17,557 galaxyEnaQ0Ba-2,540 galaxyEnaQ0Ba-2,557 galaxyEnaQ1Ay-4,540 galaxyEnaQ1Ay-4,557 galaxyEnaQ1Ay-4-2,540 galaxyEnaQ1Ay-4-2,557 galaxyEnaQ1Ay-4-2-2,540 galaxyEnaQ1Ay-4-2-2,557 galaxyEnaQ1Ay-43,540 galaxyEnaQ1Ay-43,557 galaxyEnaQ1Ba-1-17,540 galaxyEnaQ1Ba-1-17,557 galaxyEnaQ2Ay-120,540 galaxyEnaQ2Ay-120,557 galaxyEnaQ2Ay-122,540 galaxyEnaQ2Ay-122,557 galaxyEnaQ2Ay-4,540 galaxyEnaQ2Ay-4,557 galaxyEnaQ2Ay-5,540 galaxyEnaQ2Ay-5,557 galaxyEnaQ2Ay-6,540 galaxyEnaQ2Ay-6,557 galaxyEnaQ3Ay-4,540 galaxyEnaQ3Ay-4,557 galaxyEnaQ3Ay-5,540 galaxyEnaQ3Ay-5,557 galaxyEnaQ3Ay-9,540 galaxyEnaQ3Ay-9,557 galaxyEnaQ3B-1-1-7,540 galaxyEnaQ3B-1-1-7,557 galaxyEnaQ3B-1-617-2,540 galaxyEnaQ3B-1-617-2,557 iedb,87 mccoy,488 nextstrainSamples,126 poranHla1,77 poranHla2,77 primers,125 primers,271 pyle,241 rapid,203 rappuoli,495 sarsCov2Phylo,679 sarsCov2PhyloPub,703 strainCons119way,2173 strainCons44way,1768 swift,141 unipCov2AliSwissprot,125 unipCov2Chain,310 unipCov2DisulfBond,306 unipCov2Domain,305 unipCov2LocCytopl,305 unipCov2LocExtra,305 unipCov2LocSignal,306 unipCov2LocTransMemb,306 unipCov2Modif,309 unipCov2Mut,306 unipCov2Other,306 unipCov2Repeat,304 unipCov2Struct,308 variantMuts,94 weizmanOrfs,302 detected Q0_tracks,605 Q0_tracks,623 Q1_tracks,607 Q1_tracks,625 Q2_tracks,607 Q2_tracks,625 Q3_tracks,607 Q3_tracks,625 galaxyEna,607 galaxyEna,625 galaxyEnaQ0Ba-1,603 galaxyEnaQ0Ba-1,621 galaxyEnaQ0Ba-1-1,603 galaxyEnaQ0Ba-1-1,621 galaxyEnaQ0Ba-1-1-11,603 galaxyEnaQ0Ba-1-1-11,621 galaxyEnaQ0Ba-1-17,603 galaxyEnaQ0Ba-1-17,621 galaxyEnaQ0Ba-2,603 galaxyEnaQ0Ba-2,621 galaxyEnaQ1Ay-4,603 galaxyEnaQ1Ay-4,621 galaxyEnaQ1Ay-4-2,603 galaxyEnaQ1Ay-4-2,621 galaxyEnaQ1Ay-4-2-2,603 galaxyEnaQ1Ay-4-2-2,621 galaxyEnaQ1Ay-43,603 galaxyEnaQ1Ay-43,621 galaxyEnaQ1Ba-1-17,603 galaxyEnaQ1Ba-1-17,621 galaxyEnaQ2Ay-120,603 galaxyEnaQ2Ay-120,621 galaxyEnaQ2Ay-122,603 galaxyEnaQ2Ay-122,621 galaxyEnaQ2Ay-4,603 galaxyEnaQ2Ay-4,621 galaxyEnaQ2Ay-5,603 galaxyEnaQ2Ay-5,621 galaxyEnaQ2Ay-6,603 galaxyEnaQ2Ay-6,621 galaxyEnaQ3Ay-4,603 galaxyEnaQ3Ay-4,621 galaxyEnaQ3Ay-5,603 galaxyEnaQ3Ay-5,621 galaxyEnaQ3Ay-9,603 galaxyEnaQ3Ay-9,621 galaxyEnaQ3B-1-1-7,603 galaxyEnaQ3B-1-1-7,621 galaxyEnaQ3B-1-617-2,603 galaxyEnaQ3B-1-617-2,621 pond,184 spikeMuts,70 detecteddate variantMuts,260 detecting recomb,90 detection crisprDet,2 crisprDet,4 crisprDet,17 multiz7way,1017 primers,4 primers,21 primers,228 primers,261 sarsCov2Phylo,1154 sarsCov2PhyloPub,1287 strainCons119way,2395 strainCons44way,1990 variantMuts,146 variantMuts,899 detects crisprDet,75 primers,152 primers,184 determinants potPathoIndel,221 determine treangen,263 determined PhyloCSF_smooth,13 PhyloCSFpower,28 cas13Crispr,127 contacts,107 contacts,132 kimIvtCov,119 kimIvtCov,139 kimNp,29 kimRnaMod,35 phyloGenes,26 windowmaskerSdust,19 determining Q0_tracks,1061 Q1_tracks,1063 Q2_tracks,1063 Q3_tracks,1063 galaxyEna,1063 galaxyEnaQ0Ba-1,1059 galaxyEnaQ0Ba-1-1,1059 galaxyEnaQ0Ba-1-1-11,1059 galaxyEnaQ0Ba-1-17,1059 galaxyEnaQ0Ba-2,1059 galaxyEnaQ1Ay-4,1059 galaxyEnaQ1Ay-4-2,1059 galaxyEnaQ1Ay-4-2-2,1059 galaxyEnaQ1Ay-43,1059 galaxyEnaQ1Ba-1-17,1059 galaxyEnaQ2Ay-120,1059 galaxyEnaQ2Ay-122,1059 galaxyEnaQ2Ay-4,1059 galaxyEnaQ2Ay-5,1059 galaxyEnaQ2Ay-6,1059 galaxyEnaQ3Ay-4,1059 galaxyEnaQ3Ay-5,1059 galaxyEnaQ3Ay-9,1059 galaxyEnaQ3B-1-1-7,1059 galaxyEnaQ3B-1-617-2,1059 dev cpgIslandExt,419 cpgIslandExtUnmasked,422 cpgIslandSuper,419 primers,306 developed cpgIslandExt,595 cpgIslandExtUnmasked,598 cpgIslandSuper,595 recomb,85 variantMuts,1227 developing sarsCov2Phylo,861 sarsCov2PhyloPub,967 variantMuts,1199 development Q0_tracks,1136 Q1_tracks,1138 Q2_tracks,1138 Q3_tracks,1138 cas13Crispr,508 epitopes,185 galaxyEna,1138 galaxyEnaQ0Ba-1,1134 galaxyEnaQ0Ba-1-1,1134 galaxyEnaQ0Ba-1-1-11,1134 galaxyEnaQ0Ba-1-17,1134 galaxyEnaQ0Ba-2,1134 galaxyEnaQ1Ay-4,1134 galaxyEnaQ1Ay-4-2,1134 galaxyEnaQ1Ay-4-2-2,1134 galaxyEnaQ1Ay-43,1134 galaxyEnaQ1Ba-1-17,1134 galaxyEnaQ2Ay-120,1134 galaxyEnaQ2Ay-122,1134 galaxyEnaQ2Ay-4,1134 galaxyEnaQ2Ay-5,1134 galaxyEnaQ2Ay-6,1134 galaxyEnaQ3Ay-4,1134 galaxyEnaQ3Ay-5,1134 galaxyEnaQ3Ay-9,1134 galaxyEnaQ3B-1-1-7,1134 galaxyEnaQ3B-1-617-2,1134 multiz7way,866 rosettaMhc,18 spikeMuts,32 strainCons119way,2244 strainCons44way,1839 dewi poranHla1,261 poranHla2,261 dhamdhere cas13Crispr,494 diagnostic epitopes,164 rosettaMhc,20 variantMuts,109 variantMuts,131 diagnostics treangen,81 treangen,322 dialog nextstrainParsimony,399 nextstrainSamples,728 nextstrainSamples,995 diamond abEscape,802 bloomEscMabAvg,806 bloomEscMax,812 bloomEscSerumAvg,807 bloomEscTop,810 escape,809 mccoy,802 rappuoli,809 diarrhea strainCons119way,1432 diekhans augustusGene,288 multiz7way,901 strainCons119way,2279 strainCons44way,1874 unipCov2AliSwissprot,217 unipCov2AliSwissprot,416 unipCov2Chain,470 unipCov2Chain,646 unipCov2DisulfBond,466 unipCov2DisulfBond,642 unipCov2Domain,465 unipCov2Domain,641 unipCov2Interest,146 unipCov2Interest,299 unipCov2LocCytopl,465 unipCov2LocCytopl,641 unipCov2LocExtra,465 unipCov2LocExtra,641 unipCov2LocSignal,466 unipCov2LocSignal,642 unipCov2LocTransMemb,466 unipCov2LocTransMemb,642 unipCov2Modif,469 unipCov2Modif,645 unipCov2Mut,466 unipCov2Mut,642 unipCov2Other,466 unipCov2Other,642 unipCov2Repeat,464 unipCov2Repeat,640 unipCov2Struct,468 unipCov2Struct,644 diemand unipCov2AliSwissprot,470 unipCov2Chain,699 unipCov2DisulfBond,695 unipCov2Domain,694 unipCov2Interest,353 unipCov2LocCytopl,694 unipCov2LocExtra,694 unipCov2LocSignal,695 unipCov2LocTransMemb,695 unipCov2Modif,698 unipCov2Mut,695 unipCov2Other,695 unipCov2Repeat,693 unipCov2Struct,697 differed potPathoIndel,171 difference pbmShanghai,77 strainCons119way,302 strainCons44way,250 differences unipCov2Chain,233 unipCov2DisulfBond,229 unipCov2Domain,228 unipCov2LocCytopl,228 unipCov2LocExtra,228 unipCov2LocSignal,229 unipCov2LocTransMemb,229 unipCov2Modif,232 unipCov2Mut,229 unipCov2Other,229 unipCov2Repeat,227 unipCov2Struct,231 vaccines,148 different Calu3_07hpi,122 Calu3_07hpi,220 Calu3_07hpi,250 ORFs,120 ORFs,218 ORFs,248 PhyloCSF_smooth,80 PhyloCSF_smooth,503 PhyloCSFpower,95 PhyloCSFpower,518 Q0_tracks,298 Q1_tracks,300 Q2_tracks,300 Q3_tracks,300 Vero6_05hpi,122 Vero6_05hpi,220 Vero6_05hpi,250 Vero6_24hpi,122 Vero6_24hpi,220 Vero6_24hpi,250 abEscape,57 augustusGene,39 augustusGene,85 augustusGene,96 augustusGene,144 augustusGene,155 augustusGene,179 augustusGene,193 bloomEscMabAvg,61 bloomEscMax,67 bloomEscSerumAvg,62 bloomEscTop,65 escape,64 galaxyEna,300 galaxyEnaQ0Ba-1,296 galaxyEnaQ0Ba-1-1,296 galaxyEnaQ0Ba-1-1-11,296 galaxyEnaQ0Ba-1-17,296 galaxyEnaQ0Ba-2,296 galaxyEnaQ1Ay-4,296 galaxyEnaQ1Ay-4-2,296 galaxyEnaQ1Ay-4-2-2,296 galaxyEnaQ1Ay-43,296 galaxyEnaQ1Ba-1-17,296 galaxyEnaQ2Ay-120,296 galaxyEnaQ2Ay-122,296 galaxyEnaQ2Ay-4,296 galaxyEnaQ2Ay-5,296 galaxyEnaQ2Ay-6,296 galaxyEnaQ3Ay-4,296 galaxyEnaQ3Ay-5,296 galaxyEnaQ3Ay-9,296 galaxyEnaQ3B-1-1-7,296 galaxyEnaQ3B-1-617-2,296 gc5BaseBw,50 genscan,54 iedb,55 mccoy,57 nextstrainParsimony,34 nextstrainSamples,31 nextstrainSamples,220 nextstrainSamples,485 pbmShanghai,265 phyloGenes,107 phyloGenes,133 phyloGenes,209 phyloGenes,232 phyloGenes,310 rappuoli,64 rosettaMhc,136 sarsCov2Phylo,515 strainCons119way,69 strainCons119way,86 strainCons119way,248 strainCons119way,1986 strainCons44way,196 strainCons44way,1581 transcriptome,209 vaccines,19 vaccines,170 vaccines,182 variantMuts,61 weizmanOrfs,128 weizmanOrfs,226 weizmanOrfs,256 differentiate potPathoIndel,25 differing potPathoIndel,180 differs transcriptome,142 dilutions pbmShanghai,105 ding icshape,202 dingens Starr_Bloom,248 Starr_Bloom_bind,242 abEscape,835 bloomEscMabAvg,839 bloomEscMax,845 bloomEscSerumAvg,840 bloomEscTop,843 escape,842 mccoy,835 rappuoli,842 dinucleotide cpgIslandExt,240 cpgIslandExtUnmasked,243 cpgIslandSuper,240 dinucleotides cpgIslandExt,282 cpgIslandExt,340 cpgIslandExtUnmasked,285 cpgIslandExtUnmasked,343 cpgIslandSuper,282 cpgIslandSuper,340 direct kimIvtCov,45 kimIvtCov,121 kimIvtCov,141 kimIvtCov,155 kimTranscripts,143 kimTranscripts,258 sarsCov2PhyloPub,726 transcriptome,204 directed PhyloCSF_smooth,680 PhyloCSFpower,642 phyloGenes,471 directly PhyloCSF_smooth,648 cpgIslandExt,534 cpgIslandExtUnmasked,537 cpgIslandSuper,534 microdel,161 dis primers,138 discarded kimTranscripts,219 variantMuts,896 discernible Q0_tracks,159 Q1_tracks,161 Q2_tracks,161 Q3_tracks,161 galaxyEna,161 galaxyEnaQ0Ba-1,157 galaxyEnaQ0Ba-1-1,157 galaxyEnaQ0Ba-1-1-11,157 galaxyEnaQ0Ba-1-17,157 galaxyEnaQ0Ba-2,157 galaxyEnaQ1Ay-4,157 galaxyEnaQ1Ay-4-2,157 galaxyEnaQ1Ay-4-2-2,157 galaxyEnaQ1Ay-43,157 galaxyEnaQ1Ba-1-17,157 galaxyEnaQ2Ay-120,157 galaxyEnaQ2Ay-122,157 galaxyEnaQ2Ay-4,157 galaxyEnaQ2Ay-5,157 galaxyEnaQ2Ay-6,157 galaxyEnaQ3Ay-4,157 galaxyEnaQ3Ay-5,157 galaxyEnaQ3Ay-9,157 galaxyEnaQ3B-1-1-7,157 galaxyEnaQ3B-1-617-2,157 discovered kimTranscripts,208 discovery PhyloCSF_smooth,754 PhyloCSFpower,733 variantMuts,1121 discussed abEscape,282 bloomEscMabAvg,286 bloomEscMax,292 bloomEscSerumAvg,287 bloomEscTop,290 escape,289 mccoy,282 rappuoli,289 discussion vaccines,95 disease rosettaMhc,28 spikeMuts,49 unipCov2AliSwissprot,148 unipCov2Chain,354 unipCov2DisulfBond,350 unipCov2Domain,349 unipCov2LocCytopl,349 unipCov2LocExtra,349 unipCov2LocSignal,350 unipCov2LocTransMemb,350 unipCov2Modif,353 unipCov2Mut,350 unipCov2Other,350 unipCov2Repeat,348 unipCov2Struct,352 variantMuts,52 diseases iedb,32 simpleRepeat,54 display Calu3_07hpi,52 IgG_Z-score-_COVID-19_patients,76 IgG_Z-score-_COVID-19_patients,224 IgM_Z-score-_COVID-19_patients,76 IgM_Z-score-_COVID-19_patients,224 ORFs,50 Q0_tracks,270 Q0_tracks,418 Q0_tracks,552 Q1_tracks,272 Q1_tracks,420 Q1_tracks,554 Q2_tracks,272 Q2_tracks,420 Q2_tracks,554 Q3_tracks,272 Q3_tracks,420 Q3_tracks,554 Starr_Bloom,49 Starr_Bloom,72 Starr_Bloom_bind,46 Starr_Bloom_bind,66 Vero6_05hpi,52 Vero6_24hpi,52 abEscape,86 abEscape,268 abEscape,436 addgene,106 artic,28 articV4,31 articV4_1,42 bloomEscMabAvg,90 bloomEscMabAvg,272 bloomEscMabAvg,440 bloomEscMax,96 bloomEscMax,278 bloomEscMax,446 bloomEscSerumAvg,91 bloomEscSerumAvg,273 bloomEscSerumAvg,441 bloomEscTop,94 bloomEscTop,276 bloomEscTop,444 bpmIggCovidSum,85 bpmIggCovidSum,233 bpmIgmCovidSum,85 bpmIgmCovidSum,233 contacts,37 contacts,70 escape,93 escape,275 escape,443 galaxyEna,272 galaxyEna,420 galaxyEna,554 galaxyEnaQ0Ba-1,268 galaxyEnaQ0Ba-1,416 galaxyEnaQ0Ba-1,550 galaxyEnaQ0Ba-1-1,268 galaxyEnaQ0Ba-1-1,416 galaxyEnaQ0Ba-1-1,550 galaxyEnaQ0Ba-1-1-11,268 galaxyEnaQ0Ba-1-1-11,416 galaxyEnaQ0Ba-1-1-11,550 galaxyEnaQ0Ba-1-17,268 galaxyEnaQ0Ba-1-17,416 galaxyEnaQ0Ba-1-17,550 galaxyEnaQ0Ba-2,268 galaxyEnaQ0Ba-2,416 galaxyEnaQ0Ba-2,550 galaxyEnaQ1Ay-4,268 galaxyEnaQ1Ay-4,416 galaxyEnaQ1Ay-4,550 galaxyEnaQ1Ay-4-2,268 galaxyEnaQ1Ay-4-2,416 galaxyEnaQ1Ay-4-2,550 galaxyEnaQ1Ay-4-2-2,268 galaxyEnaQ1Ay-4-2-2,416 galaxyEnaQ1Ay-4-2-2,550 galaxyEnaQ1Ay-43,268 galaxyEnaQ1Ay-43,416 galaxyEnaQ1Ay-43,550 galaxyEnaQ1Ba-1-17,268 galaxyEnaQ1Ba-1-17,416 galaxyEnaQ1Ba-1-17,550 galaxyEnaQ2Ay-120,268 galaxyEnaQ2Ay-120,416 galaxyEnaQ2Ay-120,550 galaxyEnaQ2Ay-122,268 galaxyEnaQ2Ay-122,416 galaxyEnaQ2Ay-122,550 galaxyEnaQ2Ay-4,268 galaxyEnaQ2Ay-4,416 galaxyEnaQ2Ay-4,550 galaxyEnaQ2Ay-5,268 galaxyEnaQ2Ay-5,416 galaxyEnaQ2Ay-5,550 galaxyEnaQ2Ay-6,268 galaxyEnaQ2Ay-6,416 galaxyEnaQ2Ay-6,550 galaxyEnaQ3Ay-4,268 galaxyEnaQ3Ay-4,416 galaxyEnaQ3Ay-4,550 galaxyEnaQ3Ay-5,268 galaxyEnaQ3Ay-5,416 galaxyEnaQ3Ay-5,550 galaxyEnaQ3Ay-9,268 galaxyEnaQ3Ay-9,416 galaxyEnaQ3Ay-9,550 galaxyEnaQ3B-1-1-7,268 galaxyEnaQ3B-1-1-7,416 galaxyEnaQ3B-1-1-7,550 galaxyEnaQ3B-1-617-2,268 galaxyEnaQ3B-1-617-2,416 galaxyEnaQ3B-1-617-2,550 genscan,61 genscan,69 genscan,104 gold,130 gordon2,81 gordon2,133 kimIvtCov,86 kimNp,43 kimRnaMod,44 kimTranscripts,35 mccoy,86 mccoy,268 mccoy,436 multiz7way,62 multiz7way,85 multiz7way,128 multiz7way,264 multiz7way,330 multiz7way,375 multiz7way,418 multiz7way,795 multiz7way,913 multiz7way,919 nextstrainClade,176 nextstrainFreq,110 nextstrainFreq,168 nextstrainGene,126 nextstrainParsimony,325 nextstrainSamples,93 nextstrainSamples,115 nextstrainSamples,210 nextstrainSamples,301 nextstrainSamples,327 nextstrainSamples,474 nextstrainSamples,555 nextstrainSamples,580 nextstrainSamples,628 nextstrainSamples,651 nextstrainSamples,660 pbm,85 pbm,233 pbmShanghai,106 pbmShanghai,380 pdb,59 pond,87 poranHla1,80 poranHla2,80 problematicSites,477 publicAnnots,67 pyle,69 pyle,134 rapid,155 rappuoli,93 rappuoli,275 rappuoli,443 resist,64 resistPred,98 resistPred,101 rnaStructRangan,43 sarsCov2Phylo,83 sarsCov2Phylo,306 sarsCov2Phylo,332 sarsCov2Phylo,504 sarsCov2PhyloPub,96 sarsCov2PhyloPub,313 sarsCov2PhyloPub,343 sarsCov2PhyloPub,368 sarsCov2PhyloPub,533 sarsCov2PhyloPub,754 spikeMuts,178 strainCons119way,403 strainCons119way,434 strainCons119way,477 strainCons119way,613 strainCons119way,653 strainCons119way,673 strainCons119way,717 strainCons119way,758 strainCons119way,771 strainCons119way,1667 strainCons119way,2183 strainCons119way,2291 strainCons119way,2297 strainCons44way,351 strainCons44way,382 strainCons44way,425 strainCons44way,561 strainCons44way,601 strainCons44way,621 strainCons44way,665 strainCons44way,706 strainCons44way,719 strainCons44way,1262 strainCons44way,1778 strainCons44way,1886 strainCons44way,1892 swift,92 targets,109 transcriptome,27 treangen,102 unipCov2AliSwissprot,72 unipCov2Chain,257 unipCov2DisulfBond,253 unipCov2Domain,252 unipCov2Interest,44 unipCov2LocCytopl,252 unipCov2LocExtra,252 unipCov2LocSignal,253 unipCov2LocTransMemb,253 unipCov2Modif,256 unipCov2Mut,253 unipCov2Other,253 unipCov2Repeat,251 unipCov2Struct,255 vaccines,96 vaccines,113 vaccines,128 vaccines,384 variantMuts,222 varskip,28 varskip,54 weizmanOrfs,58 displayed Q0_tracks,331 Q0_tracks,453 Q0_tracks,538 Q0_tracks,653 Q0_tracks,673 Q1_tracks,333 Q1_tracks,455 Q1_tracks,540 Q1_tracks,655 Q1_tracks,675 Q2_tracks,333 Q2_tracks,455 Q2_tracks,540 Q2_tracks,655 Q2_tracks,675 Q3_tracks,333 Q3_tracks,455 Q3_tracks,540 Q3_tracks,655 Q3_tracks,675 cpgIslandExt,204 cpgIslandExtUnmasked,207 cpgIslandSuper,204 galaxyEna,333 galaxyEna,455 galaxyEna,540 galaxyEna,655 galaxyEna,675 galaxyEnaQ0Ba-1,329 galaxyEnaQ0Ba-1,451 galaxyEnaQ0Ba-1,536 galaxyEnaQ0Ba-1,651 galaxyEnaQ0Ba-1,671 galaxyEnaQ0Ba-1-1,329 galaxyEnaQ0Ba-1-1,451 galaxyEnaQ0Ba-1-1,536 galaxyEnaQ0Ba-1-1,651 galaxyEnaQ0Ba-1-1,671 galaxyEnaQ0Ba-1-1-11,329 galaxyEnaQ0Ba-1-1-11,451 galaxyEnaQ0Ba-1-1-11,536 galaxyEnaQ0Ba-1-1-11,651 galaxyEnaQ0Ba-1-1-11,671 galaxyEnaQ0Ba-1-17,329 galaxyEnaQ0Ba-1-17,451 galaxyEnaQ0Ba-1-17,536 galaxyEnaQ0Ba-1-17,651 galaxyEnaQ0Ba-1-17,671 galaxyEnaQ0Ba-2,329 galaxyEnaQ0Ba-2,451 galaxyEnaQ0Ba-2,536 galaxyEnaQ0Ba-2,651 galaxyEnaQ0Ba-2,671 galaxyEnaQ1Ay-4,329 galaxyEnaQ1Ay-4,451 galaxyEnaQ1Ay-4,536 galaxyEnaQ1Ay-4,651 galaxyEnaQ1Ay-4,671 galaxyEnaQ1Ay-4-2,329 galaxyEnaQ1Ay-4-2,451 galaxyEnaQ1Ay-4-2,536 galaxyEnaQ1Ay-4-2,651 galaxyEnaQ1Ay-4-2,671 galaxyEnaQ1Ay-4-2-2,329 galaxyEnaQ1Ay-4-2-2,451 galaxyEnaQ1Ay-4-2-2,536 galaxyEnaQ1Ay-4-2-2,651 galaxyEnaQ1Ay-4-2-2,671 galaxyEnaQ1Ay-43,329 galaxyEnaQ1Ay-43,451 galaxyEnaQ1Ay-43,536 galaxyEnaQ1Ay-43,651 galaxyEnaQ1Ay-43,671 galaxyEnaQ1Ba-1-17,329 galaxyEnaQ1Ba-1-17,451 galaxyEnaQ1Ba-1-17,536 galaxyEnaQ1Ba-1-17,651 galaxyEnaQ1Ba-1-17,671 galaxyEnaQ2Ay-120,329 galaxyEnaQ2Ay-120,451 galaxyEnaQ2Ay-120,536 galaxyEnaQ2Ay-120,651 galaxyEnaQ2Ay-120,671 galaxyEnaQ2Ay-122,329 galaxyEnaQ2Ay-122,451 galaxyEnaQ2Ay-122,536 galaxyEnaQ2Ay-122,651 galaxyEnaQ2Ay-122,671 galaxyEnaQ2Ay-4,329 galaxyEnaQ2Ay-4,451 galaxyEnaQ2Ay-4,536 galaxyEnaQ2Ay-4,651 galaxyEnaQ2Ay-4,671 galaxyEnaQ2Ay-5,329 galaxyEnaQ2Ay-5,451 galaxyEnaQ2Ay-5,536 galaxyEnaQ2Ay-5,651 galaxyEnaQ2Ay-5,671 galaxyEnaQ2Ay-6,329 galaxyEnaQ2Ay-6,451 galaxyEnaQ2Ay-6,536 galaxyEnaQ2Ay-6,651 galaxyEnaQ2Ay-6,671 galaxyEnaQ3Ay-4,329 galaxyEnaQ3Ay-4,451 galaxyEnaQ3Ay-4,536 galaxyEnaQ3Ay-4,651 galaxyEnaQ3Ay-4,671 galaxyEnaQ3Ay-5,329 galaxyEnaQ3Ay-5,451 galaxyEnaQ3Ay-5,536 galaxyEnaQ3Ay-5,651 galaxyEnaQ3Ay-5,671 galaxyEnaQ3Ay-9,329 galaxyEnaQ3Ay-9,451 galaxyEnaQ3Ay-9,536 galaxyEnaQ3Ay-9,651 galaxyEnaQ3Ay-9,671 galaxyEnaQ3B-1-1-7,329 galaxyEnaQ3B-1-1-7,451 galaxyEnaQ3B-1-1-7,536 galaxyEnaQ3B-1-1-7,651 galaxyEnaQ3B-1-1-7,671 galaxyEnaQ3B-1-617-2,329 galaxyEnaQ3B-1-617-2,451 galaxyEnaQ3B-1-617-2,536 galaxyEnaQ3B-1-617-2,651 galaxyEnaQ3B-1-617-2,671 gc5BaseBw,54 gordon2,139 iedb,16 iedb,45 multiz7way,99 multiz7way,401 multiz7way,464 multiz7way,479 nextstrainSamples,234 nextstrainSamples,545 nextstrainSamples,665 rapid,184 rosettaMhc,99 sarsCov2Phylo,56 sarsCov2Phylo,116 sarsCov2Phylo,482 sarsCov2PhyloPub,70 sarsCov2PhyloPub,129 sarsCov2PhyloPub,511 spikeMuts,276 strainCons119way,159 strainCons119way,448 strainCons119way,743 strainCons119way,762 strainCons119way,814 strainCons119way,829 strainCons44way,107 strainCons44way,396 strainCons44way,691 strainCons44way,710 strainCons44way,762 strainCons44way,777 swift,121 targets,145 displaying problematicSites,363 displays cpgIslandExt,174 cpgIslandExtUnmasked,177 cpgIslandSuper,174 nextstrainClade,16 nextstrainFreq,13 nextstrainGene,14 nextstrainParsimony,16 nextstrainParsimony,272 nextstrainSamples,16 rnaStructRangan,72 sarsCov2Phylo,22 sarsCov2PhyloPub,20 simpleRepeat,14 variantMuts,27 variantMuts,189 disseminate nextstrainFreq,279 nextstrainSamples,931 sarsCov2Phylo,881 sarsCov2PhyloPub,987 dissertation augustusGene,105 distance multiz7way,753 strainCons119way,1513 strainCons119way,1692 strainCons44way,1183 strainCons44way,1287 distances contacts,152 contacts,167 distant potPathoIndel,186 distinct Calu3_07hpi,152 ORFs,150 Vero6_05hpi,152 Vero6_24hpi,152 recomb,196 weizmanOrfs,158 distinguish PhyloCSF_smooth,99 PhyloCSF_smooth,715 PhyloCSFpower,114 PhyloCSFpower,686 cpgIslandExt,75 cpgIslandExtUnmasked,78 cpgIslandSuper,75 phyloGenes,507 distinguished gold,84 distinguishes PhyloCSF_smooth,78 PhyloCSFpower,93 distributed icshape,75 distribution Calu3_07hpi,279 ORFs,277 PhyloCSF_smooth,517 PhyloCSF_smooth,534 PhyloCSFpower,532 PhyloCSFpower,549 Vero6_05hpi,279 Vero6_24hpi,279 pyle,322 sarsCov2Phylo,998 sarsCov2PhyloPub,1118 spikeMuts,169 strainCons119way,1699 strainCons44way,1294 variantMuts,80 weizmanOrfs,285 distributions PhyloCSF_smooth,542 PhyloCSFpower,557 augustusGene,83 genscan,42 disulf unipCov2AliSwissprot,98 unipCov2Chain,283 unipCov2DisulfBond,1 unipCov2DisulfBond,279 unipCov2Domain,278 unipCov2LocCytopl,278 unipCov2LocExtra,278 unipCov2LocSignal,279 unipCov2LocTransMemb,279 unipCov2Modif,282 unipCov2Mut,279 unipCov2Other,279 unipCov2Repeat,277 unipCov2Struct,281 disulfide unipCov2Chain,192 unipCov2Chain,194 unipCov2DisulfBond,4 unipCov2DisulfBond,188 unipCov2DisulfBond,190 unipCov2Domain,187 unipCov2Domain,189 unipCov2LocCytopl,187 unipCov2LocCytopl,189 unipCov2LocExtra,187 unipCov2LocExtra,189 unipCov2LocSignal,188 unipCov2LocSignal,190 unipCov2LocTransMemb,188 unipCov2LocTransMemb,190 unipCov2Modif,191 unipCov2Modif,193 unipCov2Mut,188 unipCov2Mut,190 unipCov2Other,188 unipCov2Other,190 unipCov2Repeat,186 unipCov2Repeat,188 unipCov2Struct,190 unipCov2Struct,192 divergent recomb,141 diverse phyloGenes,540 recomb,127 diversity treangen,75 treangen,316 divided kimTranscripts,178 kimTranscripts,267 dj multiz7way,940 strainCons119way,2318 strainCons44way,1913 variantMuts,1339 dl variantMuts,1296 dm cd8escape,206 sarsCov2Phylo,1024 sarsCov2PhyloPub,1144 dms A_bind_avg,2 A_expr_avg_Expression,2 C_bind_avg,2 C_expr_avg_Expression,2 D_bind_avg,2 D_expr_avg_Expression,2 E_bind_avg,2 E_expr_avg_Expression,2 F_bind_avg,2 F_expr_avg_Expression,2 G_bind_avg,2 G_expr_avg_Expression,2 H_bind_avg,2 H_expr_avg_Expression,2 I_bind_avg,2 I_expr_avg_Expression,2 K_bind_avg,2 K_expr_avg_Expression,2 L_bind_avg,2 L_expr_avg_Expression,2 M_bind_avg,2 M_expr_avg_Expression,2 N_bind_avg,2 N_expr_avg_Expression,2 P_bind_avg,2 P_expr_avg_Expression,2 Q_bind_avg,2 Q_expr_avg_Expression,2 R_bind_avg,2 R_expr_avg_Expression,2 S_bind_avg,2 S_expr_avg_Expression,2 T_bind_avg,2 T_expr_avg_Expression,2 V_bind_avg,2 V_expr_avg_Expression,2 W_bind_avg,2 W_expr_avg_Expression,2 Y_bind_avg,2 Y_expr_avg_Expression,2 dms-view Starr_Bloom,167 Starr_Bloom_bind,161 abEscape,255 bloomEscMabAvg,259 bloomEscMax,265 bloomEscSerumAvg,260 bloomEscTop,263 escape,262 mccoy,255 rappuoli,262 dn pond,109 pond,156 pond,186 dna cpgIslandExt,60 cpgIslandExt,79 cpgIslandExt,92 cpgIslandExtUnmasked,63 cpgIslandExtUnmasked,82 cpgIslandExtUnmasked,95 cpgIslandSuper,60 cpgIslandSuper,79 cpgIslandSuper,92 genscan,219 kimIvtCov,52 kimNp,33 multiz7way,1112 multiz7way,1237 simpleRepeat,83 strainCons119way,1807 strainCons119way,2490 strainCons119way,2615 strainCons44way,1402 strainCons44way,2085 strainCons44way,2210 dnax vaccines,240 vaccines,261 do Calu3_07hpi,271 ORFs,269 Vero6_05hpi,271 Vero6_24hpi,271 cpgIslandExt,140 cpgIslandExtUnmasked,143 cpgIslandSuper,140 kimTranscripts,203 kimTranscripts,323 nextstrainParsimony,185 phyloGenes,160 sarsCov2Phylo,688 sarsCov2PhyloPub,730 sarsCov2PhyloPub,795 targets,66 weizmanOrfs,277 dockstore Q0_tracks,201 Q1_tracks,203 Q2_tracks,203 Q3_tracks,203 galaxyEna,203 galaxyEnaQ0Ba-1,199 galaxyEnaQ0Ba-1-1,199 galaxyEnaQ0Ba-1-1-11,199 galaxyEnaQ0Ba-1-17,199 galaxyEnaQ0Ba-2,199 galaxyEnaQ1Ay-4,199 galaxyEnaQ1Ay-4-2,199 galaxyEnaQ1Ay-4-2-2,199 galaxyEnaQ1Ay-43,199 galaxyEnaQ1Ba-1-17,199 galaxyEnaQ2Ay-120,199 galaxyEnaQ2Ay-122,199 galaxyEnaQ2Ay-4,199 galaxyEnaQ2Ay-5,199 galaxyEnaQ2Ay-6,199 galaxyEnaQ3Ay-4,199 galaxyEnaQ3Ay-5,199 galaxyEnaQ3Ay-9,199 galaxyEnaQ3B-1-1-7,199 galaxyEnaQ3B-1-617-2,199 docs nextstrainClade,94 document gap,57 gold,56 vaccines,563 documentation gap,29 gold,31 sarsCov2Phylo,683 sarsCov2PhyloPub,707 documented IgG_Z-score-_COVID-19_patients,275 IgM_Z-score-_COVID-19_patients,275 bpmIggCovidSum,284 bpmIgmCovidSum,284 pbm,284 pbmShanghai,401 documents vaccines,197 does PhyloCSF_smooth,247 PhyloCSF_smooth,317 PhyloCSFpower,262 PhyloCSFpower,332 cas13Crispr,312 kimIvtCov,60 nextstrainFreq,295 nextstrainGene,49 nextstrainSamples,64 nextstrainSamples,947 problematicSites,311 sarsCov2Phylo,436 sarsCov2Phylo,445 sarsCov2Phylo,897 sarsCov2PhyloPub,465 sarsCov2PhyloPub,474 sarsCov2PhyloPub,1003 strainCons119way,1932 strainCons44way,1527 doherty microdel,229 doi IgG_Z-score-_COVID-19_patients,443 IgM_Z-score-_COVID-19_patients,443 PhyloCSFpower,752 Q0_tracks,1294 Q0_tracks,1351 Q1_tracks,1296 Q1_tracks,1353 Q2_tracks,1296 Q2_tracks,1353 Q3_tracks,1296 Q3_tracks,1353 bpmIggCovidSum,452 bpmIgmCovidSum,452 epitopes,346 galaxyEna,1296 galaxyEna,1353 galaxyEnaQ0Ba-1,1292 galaxyEnaQ0Ba-1,1349 galaxyEnaQ0Ba-1-1,1292 galaxyEnaQ0Ba-1-1,1349 galaxyEnaQ0Ba-1-1-11,1292 galaxyEnaQ0Ba-1-1-11,1349 galaxyEnaQ0Ba-1-17,1292 galaxyEnaQ0Ba-1-17,1349 galaxyEnaQ0Ba-2,1292 galaxyEnaQ0Ba-2,1349 galaxyEnaQ1Ay-4,1292 galaxyEnaQ1Ay-4,1349 galaxyEnaQ1Ay-4-2,1292 galaxyEnaQ1Ay-4-2,1349 galaxyEnaQ1Ay-4-2-2,1292 galaxyEnaQ1Ay-4-2-2,1349 galaxyEnaQ1Ay-43,1292 galaxyEnaQ1Ay-43,1349 galaxyEnaQ1Ba-1-17,1292 galaxyEnaQ1Ba-1-17,1349 galaxyEnaQ2Ay-120,1292 galaxyEnaQ2Ay-120,1349 galaxyEnaQ2Ay-122,1292 galaxyEnaQ2Ay-122,1349 galaxyEnaQ2Ay-4,1292 galaxyEnaQ2Ay-4,1349 galaxyEnaQ2Ay-5,1292 galaxyEnaQ2Ay-5,1349 galaxyEnaQ2Ay-6,1292 galaxyEnaQ2Ay-6,1349 galaxyEnaQ3Ay-4,1292 galaxyEnaQ3Ay-4,1349 galaxyEnaQ3Ay-5,1292 galaxyEnaQ3Ay-5,1349 galaxyEnaQ3Ay-9,1292 galaxyEnaQ3Ay-9,1349 galaxyEnaQ3B-1-1-7,1292 galaxyEnaQ3B-1-1-7,1349 galaxyEnaQ3B-1-617-2,1292 galaxyEnaQ3B-1-617-2,1349 pbm,452 phyloGenes,544 phyloGenes,611 potPathoIndel,242 pyle,334 sarsCov2PhyloPub,1050 variantMuts,1444 doi.org epitopes,348 microdel,308 phyloGenes,583 dollar cpgIslandExt,425 cpgIslandExt,427 cpgIslandExt,431 cpgIslandExt,433 cpgIslandExt,457 cpgIslandExt,459 cpgIslandExt,461 cpgIslandExt,463 cpgIslandExt,465 cpgIslandExt,468 cpgIslandExt,471 cpgIslandExt,476 cpgIslandExt,479 cpgIslandExt,481 cpgIslandExtUnmasked,428 cpgIslandExtUnmasked,430 cpgIslandExtUnmasked,434 cpgIslandExtUnmasked,436 cpgIslandExtUnmasked,460 cpgIslandExtUnmasked,462 cpgIslandExtUnmasked,464 cpgIslandExtUnmasked,466 cpgIslandExtUnmasked,468 cpgIslandExtUnmasked,471 cpgIslandExtUnmasked,474 cpgIslandExtUnmasked,479 cpgIslandExtUnmasked,482 cpgIslandExtUnmasked,484 cpgIslandSuper,425 cpgIslandSuper,427 cpgIslandSuper,431 cpgIslandSuper,433 cpgIslandSuper,457 cpgIslandSuper,459 cpgIslandSuper,461 cpgIslandSuper,463 cpgIslandSuper,465 cpgIslandSuper,468 cpgIslandSuper,471 cpgIslandSuper,476 cpgIslandSuper,479 cpgIslandSuper,481 domain Starr_Bloom,267 Starr_Bloom_bind,261 abEscape,44 abEscape,171 abEscape,712 abEscape,756 bloomEscMabAvg,48 bloomEscMabAvg,175 bloomEscMabAvg,716 bloomEscMabAvg,760 bloomEscMax,54 bloomEscMax,181 bloomEscMax,722 bloomEscMax,766 bloomEscSerumAvg,49 bloomEscSerumAvg,176 bloomEscSerumAvg,717 bloomEscSerumAvg,761 bloomEscTop,52 bloomEscTop,179 bloomEscTop,720 bloomEscTop,764 escape,51 escape,178 escape,719 escape,763 mccoy,44 mccoy,171 mccoy,712 mccoy,756 rappuoli,51 rappuoli,178 rappuoli,719 rappuoli,763 unipCov2LocExtra,4 domains unipCov2Chain,140 unipCov2Chain,142 unipCov2Chain,151 unipCov2Chain,153 unipCov2Chain,162 unipCov2Chain,164 unipCov2Chain,182 unipCov2Chain,184 unipCov2Chain,190 unipCov2Chain,250 unipCov2Chain,325 unipCov2Chain,327 unipCov2Chain,330 unipCov2Chain,359 unipCov2DisulfBond,136 unipCov2DisulfBond,138 unipCov2DisulfBond,147 unipCov2DisulfBond,149 unipCov2DisulfBond,158 unipCov2DisulfBond,160 unipCov2DisulfBond,178 unipCov2DisulfBond,180 unipCov2DisulfBond,186 unipCov2DisulfBond,246 unipCov2DisulfBond,321 unipCov2DisulfBond,323 unipCov2DisulfBond,326 unipCov2DisulfBond,355 unipCov2Domain,2 unipCov2Domain,4 unipCov2Domain,135 unipCov2Domain,137 unipCov2Domain,146 unipCov2Domain,148 unipCov2Domain,157 unipCov2Domain,159 unipCov2Domain,177 unipCov2Domain,179 unipCov2Domain,185 unipCov2Domain,245 unipCov2Domain,320 unipCov2Domain,322 unipCov2Domain,325 unipCov2Domain,354 unipCov2LocCytopl,4 unipCov2LocCytopl,135 unipCov2LocCytopl,137 unipCov2LocCytopl,146 unipCov2LocCytopl,148 unipCov2LocCytopl,157 unipCov2LocCytopl,159 unipCov2LocCytopl,177 unipCov2LocCytopl,179 unipCov2LocCytopl,185 unipCov2LocCytopl,245 unipCov2LocCytopl,320 unipCov2LocCytopl,322 unipCov2LocCytopl,325 unipCov2LocCytopl,354 unipCov2LocExtra,135 unipCov2LocExtra,137 unipCov2LocExtra,146 unipCov2LocExtra,148 unipCov2LocExtra,157 unipCov2LocExtra,159 unipCov2LocExtra,177 unipCov2LocExtra,179 unipCov2LocExtra,185 unipCov2LocExtra,245 unipCov2LocExtra,320 unipCov2LocExtra,322 unipCov2LocExtra,325 unipCov2LocExtra,354 unipCov2LocSignal,136 unipCov2LocSignal,138 unipCov2LocSignal,147 unipCov2LocSignal,149 unipCov2LocSignal,158 unipCov2LocSignal,160 unipCov2LocSignal,178 unipCov2LocSignal,180 unipCov2LocSignal,186 unipCov2LocSignal,246 unipCov2LocSignal,321 unipCov2LocSignal,323 unipCov2LocSignal,326 unipCov2LocSignal,355 unipCov2LocTransMemb,2 unipCov2LocTransMemb,5 unipCov2LocTransMemb,136 unipCov2LocTransMemb,138 unipCov2LocTransMemb,147 unipCov2LocTransMemb,149 unipCov2LocTransMemb,158 unipCov2LocTransMemb,160 unipCov2LocTransMemb,178 unipCov2LocTransMemb,180 unipCov2LocTransMemb,186 unipCov2LocTransMemb,246 unipCov2LocTransMemb,321 unipCov2LocTransMemb,323 unipCov2LocTransMemb,326 unipCov2LocTransMemb,355 unipCov2Modif,139 unipCov2Modif,141 unipCov2Modif,150 unipCov2Modif,152 unipCov2Modif,161 unipCov2Modif,163 unipCov2Modif,181 unipCov2Modif,183 unipCov2Modif,189 unipCov2Modif,249 unipCov2Modif,324 unipCov2Modif,326 unipCov2Modif,329 unipCov2Modif,358 unipCov2Mut,136 unipCov2Mut,138 unipCov2Mut,147 unipCov2Mut,149 unipCov2Mut,158 unipCov2Mut,160 unipCov2Mut,178 unipCov2Mut,180 unipCov2Mut,186 unipCov2Mut,246 unipCov2Mut,321 unipCov2Mut,323 unipCov2Mut,326 unipCov2Mut,355 unipCov2Other,136 unipCov2Other,138 unipCov2Other,147 unipCov2Other,149 unipCov2Other,158 unipCov2Other,160 unipCov2Other,178 unipCov2Other,180 unipCov2Other,186 unipCov2Other,246 unipCov2Other,321 unipCov2Other,323 unipCov2Other,326 unipCov2Other,355 unipCov2Repeat,134 unipCov2Repeat,136 unipCov2Repeat,145 unipCov2Repeat,147 unipCov2Repeat,156 unipCov2Repeat,158 unipCov2Repeat,176 unipCov2Repeat,178 unipCov2Repeat,184 unipCov2Repeat,244 unipCov2Repeat,319 unipCov2Repeat,321 unipCov2Repeat,324 unipCov2Repeat,353 unipCov2Struct,138 unipCov2Struct,140 unipCov2Struct,149 unipCov2Struct,151 unipCov2Struct,160 unipCov2Struct,162 unipCov2Struct,180 unipCov2Struct,182 unipCov2Struct,188 unipCov2Struct,248 unipCov2Struct,323 unipCov2Struct,325 unipCov2Struct,328 unipCov2Struct,357 dominant Q0_tracks,404 Q1_tracks,406 Q2_tracks,406 Q3_tracks,406 galaxyEna,406 galaxyEnaQ0Ba-1,402 galaxyEnaQ0Ba-1-1,402 galaxyEnaQ0Ba-1-1-11,402 galaxyEnaQ0Ba-1-17,402 galaxyEnaQ0Ba-2,402 galaxyEnaQ1Ay-4,402 galaxyEnaQ1Ay-4-2,402 galaxyEnaQ1Ay-4-2-2,402 galaxyEnaQ1Ay-43,402 galaxyEnaQ1Ba-1-17,402 galaxyEnaQ2Ay-120,402 galaxyEnaQ2Ay-122,402 galaxyEnaQ2Ay-4,402 galaxyEnaQ2Ay-5,402 galaxyEnaQ2Ay-6,402 galaxyEnaQ3Ay-4,402 galaxyEnaQ3Ay-5,402 galaxyEnaQ3Ay-9,402 galaxyEnaQ3B-1-1-7,402 galaxyEnaQ3B-1-617-2,402 treangen,257 dominating Q0_tracks,392 Q1_tracks,394 Q2_tracks,394 Q3_tracks,394 galaxyEna,394 galaxyEnaQ0Ba-1,390 galaxyEnaQ0Ba-1-1,390 galaxyEnaQ0Ba-1-1-11,390 galaxyEnaQ0Ba-1-17,390 galaxyEnaQ0Ba-2,390 galaxyEnaQ1Ay-4,390 galaxyEnaQ1Ay-4-2,390 galaxyEnaQ1Ay-4-2-2,390 galaxyEnaQ1Ay-43,390 galaxyEnaQ1Ba-1-17,390 galaxyEnaQ2Ay-120,390 galaxyEnaQ2Ay-122,390 galaxyEnaQ2Ay-4,390 galaxyEnaQ2Ay-5,390 galaxyEnaQ2Ay-6,390 galaxyEnaQ3Ay-4,390 galaxyEnaQ3Ay-5,390 galaxyEnaQ3Ay-9,390 galaxyEnaQ3B-1-1-7,390 galaxyEnaQ3B-1-617-2,390 don pond,128 done Calu3_07hpi,208 ORFs,206 Q0_tracks,110 Q0_tracks,144 Q1_tracks,112 Q1_tracks,146 Q2_tracks,112 Q2_tracks,146 Q3_tracks,112 Q3_tracks,146 Vero6_05hpi,208 Vero6_24hpi,208 augustusGene,265 augustusGene,281 galaxyEna,112 galaxyEna,146 galaxyEnaQ0Ba-1,108 galaxyEnaQ0Ba-1,142 galaxyEnaQ0Ba-1-1,108 galaxyEnaQ0Ba-1-1,142 galaxyEnaQ0Ba-1-1-11,108 galaxyEnaQ0Ba-1-1-11,142 galaxyEnaQ0Ba-1-17,108 galaxyEnaQ0Ba-1-17,142 galaxyEnaQ0Ba-2,108 galaxyEnaQ0Ba-2,142 galaxyEnaQ1Ay-4,108 galaxyEnaQ1Ay-4,142 galaxyEnaQ1Ay-4-2,108 galaxyEnaQ1Ay-4-2,142 galaxyEnaQ1Ay-4-2-2,108 galaxyEnaQ1Ay-4-2-2,142 galaxyEnaQ1Ay-43,108 galaxyEnaQ1Ay-43,142 galaxyEnaQ1Ba-1-17,108 galaxyEnaQ1Ba-1-17,142 galaxyEnaQ2Ay-120,108 galaxyEnaQ2Ay-120,142 galaxyEnaQ2Ay-122,108 galaxyEnaQ2Ay-122,142 galaxyEnaQ2Ay-4,108 galaxyEnaQ2Ay-4,142 galaxyEnaQ2Ay-5,108 galaxyEnaQ2Ay-5,142 galaxyEnaQ2Ay-6,108 galaxyEnaQ2Ay-6,142 galaxyEnaQ3Ay-4,108 galaxyEnaQ3Ay-4,142 galaxyEnaQ3Ay-5,108 galaxyEnaQ3Ay-5,142 galaxyEnaQ3Ay-9,108 galaxyEnaQ3Ay-9,142 galaxyEnaQ3B-1-1-7,108 galaxyEnaQ3B-1-1-7,142 galaxyEnaQ3B-1-617-2,108 galaxyEnaQ3B-1-617-2,142 multiz7way,542 multiz7way,867 sarsCov2Phylo,695 strainCons119way,892 strainCons119way,2245 strainCons44way,840 strainCons44way,1840 weizmanOrfs,214 donor genscan,31 recomb,215 donors strainCons44way,2264 targets,9 targets,32 targets,103 targets,245 dot-bracket rnaStructRangan,77 doug spikeMuts,137 download IgG_Z-score-_COVID-19_patients,322 IgM_Z-score-_COVID-19_patients,322 PhyloCSF_smooth,651 artic,105 articV4,105 articV4_1,118 bpmIggCovidSum,331 bpmIgmCovidSum,331 cas13Crispr,390 contacts,318 icshape,84 icshape,95 kimRnaMod,152 kimTranscripts,369 microdel,168 ncbiGeneBGP,74 ncbiGeneBGP,200 ncbiProducts,90 ncbiProducts,216 nextstrainClade,181 nextstrainClade,191 nextstrainFreq,173 nextstrainFreq,184 nextstrainFreq,336 nextstrainGene,131 nextstrainGene,141 nextstrainParsimony,343 nextstrainParsimony,353 nextstrainParsimony,395 nextstrainParsimony,401 nextstrainSamples,723 nextstrainSamples,730 nextstrainSamples,743 nextstrainSamples,771 nextstrainSamples,784 nextstrainSamples,985 pbm,331 pbmShanghai,448 phyloGenes,366 poranHla1,179 poranHla2,179 primers,318 primers,328 problematicSites,500 problematicSites,511 rapid,259 recomb,275 recomb,285 resist,118 resistPred,210 sarsCov2Phylo,705 sarsCov2Phylo,716 sarsCov2Phylo,813 sarsCov2PhyloPub,739 sarsCov2PhyloPub,815 spikeMuts,336 strainCons119way,432 strainCons44way,380 swift,188 transcriptome,375 unipCov2AliSwissprot,295 unipCov2AliSwissprot,439 unipCov2Chain,525 unipCov2Chain,668 unipCov2DisulfBond,521 unipCov2DisulfBond,664 unipCov2Domain,520 unipCov2Domain,663 unipCov2Interest,201 unipCov2Interest,322 unipCov2LocCytopl,520 unipCov2LocCytopl,663 unipCov2LocExtra,520 unipCov2LocExtra,663 unipCov2LocSignal,521 unipCov2LocSignal,664 unipCov2LocTransMemb,521 unipCov2LocTransMemb,664 unipCov2Modif,524 unipCov2Modif,667 unipCov2Mut,521 unipCov2Mut,664 unipCov2Other,521 unipCov2Other,664 unipCov2Repeat,519 unipCov2Repeat,662 unipCov2Struct,523 unipCov2Struct,666 vaccines,369 variantMuts,823 variantMuts,863 variantMuts,976 variantMuts,987 varskip,111 downloaded IgG_Z-score-_COVID-19_patients,319 IgM_Z-score-_COVID-19_patients,319 PhyloCSF_smooth,647 Q0_tracks,811 Q1_tracks,813 Q2_tracks,813 Q3_tracks,813 Starr_Bloom,177 Starr_Bloom_bind,171 abEscape,572 abEscape,592 abEscape,603 addgene,152 addgene,176 artic,52 artic,102 articV4,55 articV4,102 articV4_1,66 articV4_1,115 bloomEscMabAvg,576 bloomEscMabAvg,596 bloomEscMabAvg,607 bloomEscMax,582 bloomEscMax,602 bloomEscMax,613 bloomEscSerumAvg,577 bloomEscSerumAvg,597 bloomEscSerumAvg,608 bloomEscTop,580 bloomEscTop,600 bloomEscTop,611 bpmIggCovidSum,328 bpmIgmCovidSum,328 cas13Crispr,177 cas13Crispr,387 contacts,315 escape,579 escape,599 escape,610 galaxyEna,813 galaxyEnaQ0Ba-1,809 galaxyEnaQ0Ba-1-1,809 galaxyEnaQ0Ba-1-1-11,809 galaxyEnaQ0Ba-1-17,809 galaxyEnaQ0Ba-2,809 galaxyEnaQ1Ay-4,809 galaxyEnaQ1Ay-4-2,809 galaxyEnaQ1Ay-4-2-2,809 galaxyEnaQ1Ay-43,809 galaxyEnaQ1Ba-1-17,809 galaxyEnaQ2Ay-120,809 galaxyEnaQ2Ay-122,809 galaxyEnaQ2Ay-4,809 galaxyEnaQ2Ay-5,809 galaxyEnaQ2Ay-6,809 galaxyEnaQ3Ay-4,809 galaxyEnaQ3Ay-5,809 galaxyEnaQ3Ay-9,809 galaxyEnaQ3B-1-1-7,809 galaxyEnaQ3B-1-617-2,809 gordon2,184 kimRnaMod,149 kimTranscripts,366 mccoy,572 mccoy,592 mccoy,603 microdel,160 ncbiGeneBGP,71 ncbiGeneBGP,96 ncbiProducts,87 ncbiProducts,112 nextstrainFreq,331 pbm,328 pbmShanghai,445 pdb,104 phyloGenes,363 poranHla1,176 poranHla2,176 problematicSites,456 problematicSites,489 rapid,193 rapid,256 rappuoli,579 rappuoli,599 rappuoli,610 resist,115 resistPred,207 sarsCov2Phylo,851 spikeMuts,317 spikeMuts,332 swift,133 swift,185 targets,183 transcriptome,372 treangen,198 ucscToINSDC,36 ucscToRefSeq,30 unipCov2AliSwissprot,292 unipCov2AliSwissprot,328 unipCov2Chain,522 unipCov2Chain,558 unipCov2DisulfBond,518 unipCov2DisulfBond,554 unipCov2Domain,517 unipCov2Domain,553 unipCov2Interest,198 unipCov2Interest,234 unipCov2LocCytopl,517 unipCov2LocCytopl,553 unipCov2LocExtra,517 unipCov2LocExtra,553 unipCov2LocSignal,518 unipCov2LocSignal,554 unipCov2LocTransMemb,518 unipCov2LocTransMemb,554 unipCov2Modif,521 unipCov2Modif,557 unipCov2Mut,518 unipCov2Mut,554 unipCov2Other,518 unipCov2Other,554 unipCov2Repeat,516 unipCov2Repeat,552 unipCov2Struct,520 unipCov2Struct,556 vaccines,418 variantMuts,795 varskip,60 varskip,108 downloading IgG_Z-score-_COVID-19_patients,340 IgG_Z-score-_COVID-19_patients,364 IgM_Z-score-_COVID-19_patients,340 IgM_Z-score-_COVID-19_patients,364 artic,123 artic,147 articV4,123 articV4,147 articV4_1,136 articV4_1,160 bpmIggCovidSum,349 bpmIggCovidSum,373 bpmIgmCovidSum,349 bpmIgmCovidSum,373 cas13Crispr,408 cas13Crispr,432 contacts,336 contacts,360 kimRnaMod,170 kimRnaMod,194 kimTranscripts,387 kimTranscripts,411 ncbiGeneBGP,106 ncbiProducts,122 pbm,349 pbm,373 pbmShanghai,466 phyloGenes,384 phyloGenes,408 poranHla1,197 poranHla1,221 poranHla2,197 poranHla2,221 rapid,277 rapid,301 swift,206 swift,230 transcriptome,393 transcriptome,417 unipCov2AliSwissprot,338 unipCov2Chain,568 unipCov2DisulfBond,564 unipCov2Domain,563 unipCov2Interest,244 unipCov2LocCytopl,563 unipCov2LocExtra,563 unipCov2LocSignal,564 unipCov2LocTransMemb,564 unipCov2Modif,567 unipCov2Mut,564 unipCov2Other,564 unipCov2Repeat,562 unipCov2Struct,566 vaccines,428 varskip,129 varskip,153 downloads Q0_tracks,945 Q1_tracks,947 Q2_tracks,947 Q3_tracks,947 galaxyEna,947 galaxyEnaQ0Ba-1,943 galaxyEnaQ0Ba-1-1,943 galaxyEnaQ0Ba-1-1-11,943 galaxyEnaQ0Ba-1-17,943 galaxyEnaQ0Ba-2,943 galaxyEnaQ1Ay-4,943 galaxyEnaQ1Ay-4-2,943 galaxyEnaQ1Ay-4-2-2,943 galaxyEnaQ1Ay-43,943 galaxyEnaQ1Ba-1-17,943 galaxyEnaQ2Ay-120,943 galaxyEnaQ2Ay-122,943 galaxyEnaQ2Ay-4,943 galaxyEnaQ2Ay-5,943 galaxyEnaQ2Ay-6,943 galaxyEnaQ3Ay-4,943 galaxyEnaQ3Ay-5,943 galaxyEnaQ3Ay-9,943 galaxyEnaQ3B-1-1-7,943 galaxyEnaQ3B-1-617-2,943 multiz7way,798 nextstrainClade,121 nextstrainClade,171 nextstrainFreq,133 nextstrainFreq,163 nextstrainGene,91 nextstrainGene,121 nextstrainParsimony,288 nextstrainParsimony,320 nextstrainSamples,601 nextstrainSamples,653 spikeMuts,320 strainCons119way,18 strainCons44way,15 unipCov2AliSwissprot,381 unipCov2Chain,611 unipCov2DisulfBond,607 unipCov2Domain,606 unipCov2LocCytopl,606 unipCov2LocExtra,606 unipCov2LocSignal,607 unipCov2LocTransMemb,607 unipCov2Modif,610 unipCov2Mut,607 unipCov2Other,607 unipCov2Repeat,605 unipCov2Struct,609 downsamples nextstrainSamples,614 downstream phyloGenes,260 rapid,118 dozen spikeMuts,63 dp pond,251 strainCons119way,1126 strainCons119way,1131 dq022305v2 strainCons44way,1204 dq071615v1 strainCons44way,1209 dq412042v1 strainCons44way,1236 dq412043v1 strainCons44way,1241 dq648856v1 strainCons44way,1237 draft gold,149 draw kimIvtCov,64 vaccines,132 drawn IgG_Z-score-_COVID-19_patients,109 IgM_Z-score-_COVID-19_patients,109 bpmIggCovidSum,118 bpmIgmCovidSum,118 gap,107 gold,126 kimTranscripts,101 multiz7way,173 multiz7way,177 multiz7way,199 multiz7way,221 multiz7way,234 nextstrainSamples,312 nextstrainSamples,418 nextstrainSamples,509 pbm,118 pbmShanghai,175 sarsCov2Phylo,317 sarsCov2Phylo,454 sarsCov2PhyloPub,324 sarsCov2PhyloPub,483 strainCons119way,522 strainCons119way,526 strainCons119way,548 strainCons119way,570 strainCons119way,583 strainCons44way,470 strainCons44way,474 strainCons44way,496 strainCons44way,518 strainCons44way,531 transcriptome,93 transcriptome,192 draws unipCov2AliSwissprot,209 unipCov2Chain,462 unipCov2DisulfBond,458 unipCov2Domain,457 unipCov2Interest,138 unipCov2LocCytopl,457 unipCov2LocExtra,457 unipCov2LocSignal,458 unipCov2LocTransMemb,458 unipCov2Modif,461 unipCov2Mut,458 unipCov2Other,458 unipCov2Repeat,456 unipCov2Struct,460 drift strainCons119way,315 strainCons44way,263 drosophila augustusGene,213 drosten primers,201 drug gordon2,31 gordon2,263 resist,1 resist,7 resist,27 resistPred,7 resistPred,36 resistPred,45 drug-repurposing gordon2,35 gordon2,267 druggable gordon2,10 drugs Calu3_07hpi,150 ORFs,148 Vero6_05hpi,150 Vero6_24hpi,150 icshape,226 weizmanOrfs,156 ds pond,110 pond,157 pond,187 du sarsCov2Phylo,947 sarsCov2PhyloPub,1067 variantMuts,1254 duan IgG_Z-score-_COVID-19_patients,419 IgM_Z-score-_COVID-19_patients,419 bpmIggCovidSum,428 bpmIgmCovidSum,428 pbm,428 dudas multiz7way,949 strainCons119way,2327 strainCons44way,1922 due contacts,173 icshape,54 problematicSites,304 problematicSites,325 sarsCov2Phylo,757 variantMuts,949 duplication cpgIslandExt,95 cpgIslandExtUnmasked,98 cpgIslandSuper,95 multiz7way,1139 strainCons119way,2517 strainCons44way,2112 during kimTranscripts,74 multiz7way,961 nextstrainParsimony,39 nextstrainSamples,36 strainCons119way,2339 strainCons44way,1934 transcriptome,66 dy pbmShanghai,497 dynamic multiz7way,646 sarsCov2Phylo,953 sarsCov2PhyloPub,1073 strainCons119way,995 strainCons44way,943 variantMuts,1260 e E_104Max,2 E_104Total,2 E_104Total,11 E_28Max,2 E_28Total,2 E_28Total,11 PhyloCSFpower,725 abEscape,734 abEscape,782 abEscape,862 abEscape,876 bloomEscMabAvg,738 bloomEscMabAvg,786 bloomEscMabAvg,866 bloomEscMabAvg,880 bloomEscMax,744 bloomEscMax,792 bloomEscMax,872 bloomEscMax,886 bloomEscSerumAvg,739 bloomEscSerumAvg,787 bloomEscSerumAvg,867 bloomEscSerumAvg,881 bloomEscTop,742 bloomEscTop,790 bloomEscTop,870 bloomEscTop,884 cd8escape,112 escape,741 escape,789 escape,869 escape,883 kimRnaMod,15 mccoy,734 mccoy,782 mccoy,862 mccoy,876 phyloGenes,87 primers,209 rappuoli,741 rappuoli,789 rappuoli,869 rappuoli,883 sarsCov2Phylo,973 sarsCov2PhyloPub,1093 unipCov2AliSwissprot,477 unipCov2Chain,706 unipCov2DisulfBond,702 unipCov2Domain,701 unipCov2Interest,360 unipCov2LocCytopl,701 unipCov2LocExtra,701 unipCov2LocSignal,702 unipCov2LocTransMemb,702 unipCov2Modif,705 unipCov2Mut,702 unipCov2Other,702 unipCov2Repeat,700 unipCov2Struct,704 vaccines,656 variantMuts,1298 variantMuts,1325 variantMuts,1333 e.g Q0_tracks,162 Q1_tracks,164 Q2_tracks,164 Q3_tracks,164 galaxyEna,164 galaxyEnaQ0Ba-1,160 galaxyEnaQ0Ba-1-1,160 galaxyEnaQ0Ba-1-1-11,160 galaxyEnaQ0Ba-1-17,160 galaxyEnaQ0Ba-2,160 galaxyEnaQ1Ay-4,160 galaxyEnaQ1Ay-4-2,160 galaxyEnaQ1Ay-4-2-2,160 galaxyEnaQ1Ay-43,160 galaxyEnaQ1Ba-1-17,160 galaxyEnaQ2Ay-120,160 galaxyEnaQ2Ay-122,160 galaxyEnaQ2Ay-4,160 galaxyEnaQ2Ay-5,160 galaxyEnaQ2Ay-6,160 galaxyEnaQ3Ay-4,160 galaxyEnaQ3Ay-5,160 galaxyEnaQ3Ay-9,160 galaxyEnaQ3B-1-1-7,160 galaxyEnaQ3B-1-617-2,160 kimRnaMod,94 pdb,50 publicAnnots,89 spikeMuts,217 spikeMuts,224 strainCons119way,289 strainCons44way,237 unipCov2AliSwissprot,93 unipCov2Chain,278 unipCov2DisulfBond,274 unipCov2Domain,273 unipCov2LocCytopl,273 unipCov2LocExtra,273 unipCov2LocSignal,274 unipCov2LocTransMemb,274 unipCov2Modif,277 unipCov2Mut,274 unipCov2Other,274 unipCov2Repeat,272 unipCov2Struct,276 variantMuts,737 variantMuts,757 variantMuts,777 e1008643 Q0_tracks,1293 Q1_tracks,1295 Q2_tracks,1295 Q3_tracks,1295 galaxyEna,1295 galaxyEnaQ0Ba-1,1291 galaxyEnaQ0Ba-1-1,1291 galaxyEnaQ0Ba-1-1-11,1291 galaxyEnaQ0Ba-1-17,1291 galaxyEnaQ0Ba-2,1291 galaxyEnaQ1Ay-4,1291 galaxyEnaQ1Ay-4-2,1291 galaxyEnaQ1Ay-4-2-2,1291 galaxyEnaQ1Ay-43,1291 galaxyEnaQ1Ba-1-17,1291 galaxyEnaQ2Ay-120,1291 galaxyEnaQ2Ay-122,1291 galaxyEnaQ2Ay-4,1291 galaxyEnaQ2Ay-5,1291 galaxyEnaQ2Ay-6,1291 galaxyEnaQ3Ay-4,1291 galaxyEnaQ3Ay-5,1291 galaxyEnaQ3Ay-9,1291 galaxyEnaQ3B-1-1-7,1291 galaxyEnaQ3B-1-617-2,1291 e484 spikeMuts,132 e6 Calu3_07hpi,254 ORFs,252 Vero6_05hpi,254 Vero6_24hpi,254 weizmanOrfs,260 e9490 sarsCov2Phylo,1141 sarsCov2PhyloPub,1274 e_104 E_104Max,10 e_28 E_28Max,10 e_bind_avg E_bind_avg,1 e_expr_avg E_expr_avg_Expression,1 each Calu3_07hpi,116 Calu3_07hpi,125 ORFs,114 ORFs,123 PhyloCSF_smooth,134 PhyloCSF_smooth,137 PhyloCSF_smooth,189 PhyloCSF_smooth,397 PhyloCSF_smooth,454 PhyloCSF_smooth,553 PhyloCSFpower,149 PhyloCSFpower,152 PhyloCSFpower,204 PhyloCSFpower,412 PhyloCSFpower,469 PhyloCSFpower,568 Q0_tracks,310 Q0_tracks,354 Q0_tracks,675 Q0_tracks,879 Q0_tracks,1070 Q0_tracks,1086 Q0_tracks,1089 Q1_tracks,312 Q1_tracks,356 Q1_tracks,677 Q1_tracks,881 Q1_tracks,1072 Q1_tracks,1088 Q1_tracks,1091 Q2_tracks,312 Q2_tracks,356 Q2_tracks,677 Q2_tracks,881 Q2_tracks,1072 Q2_tracks,1088 Q2_tracks,1091 Q3_tracks,312 Q3_tracks,356 Q3_tracks,677 Q3_tracks,881 Q3_tracks,1072 Q3_tracks,1088 Q3_tracks,1091 Starr_Bloom,76 Starr_Bloom,89 Starr_Bloom_bind,70 Starr_Bloom_bind,83 Vero6_05hpi,116 Vero6_05hpi,125 Vero6_24hpi,116 Vero6_24hpi,125 addgene,74 addgene,99 addgene,195 addgene,260 cas13Crispr,105 cas13Crispr,255 cas13Crispr,310 contacts,231 cpgIslandExt,239 cpgIslandExt,253 cpgIslandExtUnmasked,242 cpgIslandExtUnmasked,256 cpgIslandSuper,239 cpgIslandSuper,253 galaxyEna,312 galaxyEna,356 galaxyEna,677 galaxyEna,881 galaxyEna,1072 galaxyEna,1088 galaxyEna,1091 galaxyEnaQ0Ba-1,308 galaxyEnaQ0Ba-1,352 galaxyEnaQ0Ba-1,673 galaxyEnaQ0Ba-1,877 galaxyEnaQ0Ba-1,1068 galaxyEnaQ0Ba-1,1084 galaxyEnaQ0Ba-1,1087 galaxyEnaQ0Ba-1-1,308 galaxyEnaQ0Ba-1-1,352 galaxyEnaQ0Ba-1-1,673 galaxyEnaQ0Ba-1-1,877 galaxyEnaQ0Ba-1-1,1068 galaxyEnaQ0Ba-1-1,1084 galaxyEnaQ0Ba-1-1,1087 galaxyEnaQ0Ba-1-1-11,308 galaxyEnaQ0Ba-1-1-11,352 galaxyEnaQ0Ba-1-1-11,673 galaxyEnaQ0Ba-1-1-11,877 galaxyEnaQ0Ba-1-1-11,1068 galaxyEnaQ0Ba-1-1-11,1084 galaxyEnaQ0Ba-1-1-11,1087 galaxyEnaQ0Ba-1-17,308 galaxyEnaQ0Ba-1-17,352 galaxyEnaQ0Ba-1-17,673 galaxyEnaQ0Ba-1-17,877 galaxyEnaQ0Ba-1-17,1068 galaxyEnaQ0Ba-1-17,1084 galaxyEnaQ0Ba-1-17,1087 galaxyEnaQ0Ba-2,308 galaxyEnaQ0Ba-2,352 galaxyEnaQ0Ba-2,673 galaxyEnaQ0Ba-2,877 galaxyEnaQ0Ba-2,1068 galaxyEnaQ0Ba-2,1084 galaxyEnaQ0Ba-2,1087 galaxyEnaQ1Ay-4,308 galaxyEnaQ1Ay-4,352 galaxyEnaQ1Ay-4,673 galaxyEnaQ1Ay-4,877 galaxyEnaQ1Ay-4,1068 galaxyEnaQ1Ay-4,1084 galaxyEnaQ1Ay-4,1087 galaxyEnaQ1Ay-4-2,308 galaxyEnaQ1Ay-4-2,352 galaxyEnaQ1Ay-4-2,673 galaxyEnaQ1Ay-4-2,877 galaxyEnaQ1Ay-4-2,1068 galaxyEnaQ1Ay-4-2,1084 galaxyEnaQ1Ay-4-2,1087 galaxyEnaQ1Ay-4-2-2,308 galaxyEnaQ1Ay-4-2-2,352 galaxyEnaQ1Ay-4-2-2,673 galaxyEnaQ1Ay-4-2-2,877 galaxyEnaQ1Ay-4-2-2,1068 galaxyEnaQ1Ay-4-2-2,1084 galaxyEnaQ1Ay-4-2-2,1087 galaxyEnaQ1Ay-43,308 galaxyEnaQ1Ay-43,352 galaxyEnaQ1Ay-43,673 galaxyEnaQ1Ay-43,877 galaxyEnaQ1Ay-43,1068 galaxyEnaQ1Ay-43,1084 galaxyEnaQ1Ay-43,1087 galaxyEnaQ1Ba-1-17,308 galaxyEnaQ1Ba-1-17,352 galaxyEnaQ1Ba-1-17,673 galaxyEnaQ1Ba-1-17,877 galaxyEnaQ1Ba-1-17,1068 galaxyEnaQ1Ba-1-17,1084 galaxyEnaQ1Ba-1-17,1087 galaxyEnaQ2Ay-120,308 galaxyEnaQ2Ay-120,352 galaxyEnaQ2Ay-120,673 galaxyEnaQ2Ay-120,877 galaxyEnaQ2Ay-120,1068 galaxyEnaQ2Ay-120,1084 galaxyEnaQ2Ay-120,1087 galaxyEnaQ2Ay-122,308 galaxyEnaQ2Ay-122,352 galaxyEnaQ2Ay-122,673 galaxyEnaQ2Ay-122,877 galaxyEnaQ2Ay-122,1068 galaxyEnaQ2Ay-122,1084 galaxyEnaQ2Ay-122,1087 galaxyEnaQ2Ay-4,308 galaxyEnaQ2Ay-4,352 galaxyEnaQ2Ay-4,673 galaxyEnaQ2Ay-4,877 galaxyEnaQ2Ay-4,1068 galaxyEnaQ2Ay-4,1084 galaxyEnaQ2Ay-4,1087 galaxyEnaQ2Ay-5,308 galaxyEnaQ2Ay-5,352 galaxyEnaQ2Ay-5,673 galaxyEnaQ2Ay-5,877 galaxyEnaQ2Ay-5,1068 galaxyEnaQ2Ay-5,1084 galaxyEnaQ2Ay-5,1087 galaxyEnaQ2Ay-6,308 galaxyEnaQ2Ay-6,352 galaxyEnaQ2Ay-6,673 galaxyEnaQ2Ay-6,877 galaxyEnaQ2Ay-6,1068 galaxyEnaQ2Ay-6,1084 galaxyEnaQ2Ay-6,1087 galaxyEnaQ3Ay-4,308 galaxyEnaQ3Ay-4,352 galaxyEnaQ3Ay-4,673 galaxyEnaQ3Ay-4,877 galaxyEnaQ3Ay-4,1068 galaxyEnaQ3Ay-4,1084 galaxyEnaQ3Ay-4,1087 galaxyEnaQ3Ay-5,308 galaxyEnaQ3Ay-5,352 galaxyEnaQ3Ay-5,673 galaxyEnaQ3Ay-5,877 galaxyEnaQ3Ay-5,1068 galaxyEnaQ3Ay-5,1084 galaxyEnaQ3Ay-5,1087 galaxyEnaQ3Ay-9,308 galaxyEnaQ3Ay-9,352 galaxyEnaQ3Ay-9,673 galaxyEnaQ3Ay-9,877 galaxyEnaQ3Ay-9,1068 galaxyEnaQ3Ay-9,1084 galaxyEnaQ3Ay-9,1087 galaxyEnaQ3B-1-1-7,308 galaxyEnaQ3B-1-1-7,352 galaxyEnaQ3B-1-1-7,673 galaxyEnaQ3B-1-1-7,877 galaxyEnaQ3B-1-1-7,1068 galaxyEnaQ3B-1-1-7,1084 galaxyEnaQ3B-1-1-7,1087 galaxyEnaQ3B-1-617-2,308 galaxyEnaQ3B-1-617-2,352 galaxyEnaQ3B-1-617-2,673 galaxyEnaQ3B-1-617-2,877 galaxyEnaQ3B-1-617-2,1068 galaxyEnaQ3B-1-617-2,1084 galaxyEnaQ3B-1-617-2,1087 genscan,99 iedb,64 iedb,80 kimNp,64 multiz7way,92 multiz7way,339 multiz7way,580 multiz7way,589 nextstrainFreq,87 nextstrainParsimony,103 nextstrainParsimony,252 nextstrainSamples,100 nextstrainSamples,166 nextstrainSamples,314 nextstrainSamples,350 nextstrainSamples,388 nextstrainSamples,425 pond,223 rapid,59 recomb,200 recomb,241 resistPred,161 sarsCov2Phylo,319 sarsCov2Phylo,354 sarsCov2Phylo,392 sarsCov2Phylo,461 sarsCov2Phylo,528 sarsCov2PhyloPub,326 sarsCov2PhyloPub,371 sarsCov2PhyloPub,383 sarsCov2PhyloPub,421 sarsCov2PhyloPub,490 sarsCov2PhyloPub,553 spikeMuts,146 strainCons119way,183 strainCons119way,199 strainCons119way,441 strainCons119way,681 strainCons119way,930 strainCons119way,939 strainCons119way,1810 strainCons119way,1858 strainCons119way,2013 strainCons119way,2048 strainCons119way,2100 strainCons44way,131 strainCons44way,147 strainCons44way,389 strainCons44way,629 strainCons44way,878 strainCons44way,887 strainCons44way,1405 strainCons44way,1453 strainCons44way,1608 strainCons44way,1643 strainCons44way,1695 treangen,173 variantMuts,781 weizmanOrfs,122 weizmanOrfs,131 earlier spikeMuts,325 earliest Q0_tracks,651 Q1_tracks,653 Q2_tracks,653 Q3_tracks,653 galaxyEna,653 galaxyEnaQ0Ba-1,649 galaxyEnaQ0Ba-1-1,649 galaxyEnaQ0Ba-1-1-11,649 galaxyEnaQ0Ba-1-17,649 galaxyEnaQ0Ba-2,649 galaxyEnaQ1Ay-4,649 galaxyEnaQ1Ay-4-2,649 galaxyEnaQ1Ay-4-2-2,649 galaxyEnaQ1Ay-43,649 galaxyEnaQ1Ba-1-17,649 galaxyEnaQ2Ay-120,649 galaxyEnaQ2Ay-122,649 galaxyEnaQ2Ay-4,649 galaxyEnaQ2Ay-5,649 galaxyEnaQ2Ay-6,649 galaxyEnaQ3Ay-4,649 galaxyEnaQ3Ay-5,649 galaxyEnaQ3Ay-9,649 galaxyEnaQ3B-1-1-7,649 galaxyEnaQ3B-1-617-2,649 variantMuts,811 early IgG_Z-score-_COVID-19_patients,3 IgG_Z-score-_COVID-19_patients,10 IgG_Z-score-_COVID-19_patients,38 IgG_Z-score-_COVID-19_patients,64 IgM_Z-score-_COVID-19_patients,3 IgM_Z-score-_COVID-19_patients,10 IgM_Z-score-_COVID-19_patients,38 IgM_Z-score-_COVID-19_patients,64 bpmIggCovidSum,47 bpmIggCovidSum,73 bpmIgmCovidSum,47 bpmIgmCovidSum,73 pbm,47 pbm,73 variantMuts,954 easier pbmShanghai,279 east multiz7way,706 potPathoIndel,40 strainCons119way,1334 eb sarsCov2Phylo,979 sarsCov2PhyloPub,1099 ebola multiz7way,956 strainCons119way,2334 strainCons44way,1929 ec sarsCov2Phylo,937 sarsCov2PhyloPub,1057 variantMuts,1244 eccb PhyloCSFpower,695 phyloGenes,516 ed multiz7way,1186 strainCons119way,2564 strainCons44way,2159 edited rfam,61 editing kimIvtCov,71 editor multiz7way,1090 strainCons119way,2468 strainCons44way,2063 editors genscan,195 eeek spikeMuts,133 effect Q0_tracks,801 Q1_tracks,803 Q2_tracks,803 Q3_tracks,803 Starr_Bloom,25 Starr_Bloom,55 Starr_Bloom_bind,26 Starr_Bloom_bind,52 abEscape,73 bloomEscMabAvg,77 bloomEscMax,83 bloomEscSerumAvg,78 bloomEscTop,81 escape,80 galaxyEna,803 galaxyEnaQ0Ba-1,799 galaxyEnaQ0Ba-1-1,799 galaxyEnaQ0Ba-1-1-11,799 galaxyEnaQ0Ba-1-17,799 galaxyEnaQ0Ba-2,799 galaxyEnaQ1Ay-4,799 galaxyEnaQ1Ay-4-2,799 galaxyEnaQ1Ay-4-2-2,799 galaxyEnaQ1Ay-43,799 galaxyEnaQ1Ba-1-17,799 galaxyEnaQ2Ay-120,799 galaxyEnaQ2Ay-122,799 galaxyEnaQ2Ay-4,799 galaxyEnaQ2Ay-5,799 galaxyEnaQ2Ay-6,799 galaxyEnaQ3Ay-4,799 galaxyEnaQ3Ay-5,799 galaxyEnaQ3Ay-9,799 galaxyEnaQ3B-1-1-7,799 galaxyEnaQ3B-1-617-2,799 mccoy,73 multiz7way,109 rappuoli,80 strainCons119way,458 strainCons44way,406 effective Q0_tracks,1277 Q1_tracks,1279 Q2_tracks,1279 Q3_tracks,1279 epitopes,169 galaxyEna,1279 galaxyEnaQ0Ba-1,1275 galaxyEnaQ0Ba-1-1,1275 galaxyEnaQ0Ba-1-1-11,1275 galaxyEnaQ0Ba-1-17,1275 galaxyEnaQ0Ba-2,1275 galaxyEnaQ1Ay-4,1275 galaxyEnaQ1Ay-4-2,1275 galaxyEnaQ1Ay-4-2-2,1275 galaxyEnaQ1Ay-43,1275 galaxyEnaQ1Ba-1-17,1275 galaxyEnaQ2Ay-120,1275 galaxyEnaQ2Ay-122,1275 galaxyEnaQ2Ay-4,1275 galaxyEnaQ2Ay-5,1275 galaxyEnaQ2Ay-6,1275 galaxyEnaQ3Ay-4,1275 galaxyEnaQ3Ay-5,1275 galaxyEnaQ3Ay-9,1275 galaxyEnaQ3B-1-1-7,1275 galaxyEnaQ3B-1-617-2,1275 nextstrainSamples,1066 strainCons119way,263 strainCons44way,211 effects Q0_tracks,480 Q1_tracks,482 Q2_tracks,482 Q3_tracks,482 abEscape,322 bloomEscMabAvg,326 bloomEscMax,332 bloomEscSerumAvg,327 bloomEscTop,330 escape,329 galaxyEna,482 galaxyEnaQ0Ba-1,478 galaxyEnaQ0Ba-1-1,478 galaxyEnaQ0Ba-1-1-11,478 galaxyEnaQ0Ba-1-17,478 galaxyEnaQ0Ba-2,478 galaxyEnaQ1Ay-4,478 galaxyEnaQ1Ay-4-2,478 galaxyEnaQ1Ay-4-2-2,478 galaxyEnaQ1Ay-43,478 galaxyEnaQ1Ba-1-17,478 galaxyEnaQ2Ay-120,478 galaxyEnaQ2Ay-122,478 galaxyEnaQ2Ay-4,478 galaxyEnaQ2Ay-5,478 galaxyEnaQ2Ay-6,478 galaxyEnaQ3Ay-4,478 galaxyEnaQ3Ay-5,478 galaxyEnaQ3Ay-9,478 galaxyEnaQ3B-1-1-7,478 galaxyEnaQ3B-1-617-2,478 mccoy,322 rappuoli,329 strainCons119way,219 strainCons44way,167 efficacy spikeMuts,55 variantMuts,113 variantMuts,134 efficiency cas13Crispr,113 effort Q0_tracks,281 Q1_tracks,283 Q2_tracks,283 Q3_tracks,283 galaxyEna,283 galaxyEnaQ0Ba-1,279 galaxyEnaQ0Ba-1-1,279 galaxyEnaQ0Ba-1-1-11,279 galaxyEnaQ0Ba-1-17,279 galaxyEnaQ0Ba-2,279 galaxyEnaQ1Ay-4,279 galaxyEnaQ1Ay-4-2,279 galaxyEnaQ1Ay-4-2-2,279 galaxyEnaQ1Ay-43,279 galaxyEnaQ1Ba-1-17,279 galaxyEnaQ2Ay-120,279 galaxyEnaQ2Ay-122,279 galaxyEnaQ2Ay-4,279 galaxyEnaQ2Ay-5,279 galaxyEnaQ2Ay-6,279 galaxyEnaQ3Ay-4,279 galaxyEnaQ3Ay-5,279 galaxyEnaQ3Ay-9,279 galaxyEnaQ3B-1-1-7,279 galaxyEnaQ3B-1-617-2,279 efforts Q0_tracks,27 Q0_tracks,1116 Q1_tracks,29 Q1_tracks,1118 Q2_tracks,29 Q2_tracks,1118 Q3_tracks,29 Q3_tracks,1118 galaxyEna,29 galaxyEna,1118 galaxyEnaQ0Ba-1,25 galaxyEnaQ0Ba-1,1114 galaxyEnaQ0Ba-1-1,25 galaxyEnaQ0Ba-1-1,1114 galaxyEnaQ0Ba-1-1-11,25 galaxyEnaQ0Ba-1-1-11,1114 galaxyEnaQ0Ba-1-17,25 galaxyEnaQ0Ba-1-17,1114 galaxyEnaQ0Ba-2,25 galaxyEnaQ0Ba-2,1114 galaxyEnaQ1Ay-4,25 galaxyEnaQ1Ay-4,1114 galaxyEnaQ1Ay-4-2,25 galaxyEnaQ1Ay-4-2,1114 galaxyEnaQ1Ay-4-2-2,25 galaxyEnaQ1Ay-4-2-2,1114 galaxyEnaQ1Ay-43,25 galaxyEnaQ1Ay-43,1114 galaxyEnaQ1Ba-1-17,25 galaxyEnaQ1Ba-1-17,1114 galaxyEnaQ2Ay-120,25 galaxyEnaQ2Ay-120,1114 galaxyEnaQ2Ay-122,25 galaxyEnaQ2Ay-122,1114 galaxyEnaQ2Ay-4,25 galaxyEnaQ2Ay-4,1114 galaxyEnaQ2Ay-5,25 galaxyEnaQ2Ay-5,1114 galaxyEnaQ2Ay-6,25 galaxyEnaQ2Ay-6,1114 galaxyEnaQ3Ay-4,25 galaxyEnaQ3Ay-4,1114 galaxyEnaQ3Ay-5,25 galaxyEnaQ3Ay-5,1114 galaxyEnaQ3Ay-9,25 galaxyEnaQ3Ay-9,1114 galaxyEnaQ3B-1-1-7,25 galaxyEnaQ3B-1-1-7,1114 galaxyEnaQ3B-1-617-2,25 galaxyEnaQ3B-1-617-2,1114 eg.5 variantMuts,559 eg.5.1 variantAaMuts_EG_5_1,2 variantAaMuts_EG_5_1,6 variantMuts,553 variantMuts,1145 variantNucMuts_EG_5_1,2 variantNucMuts_EG_5_1,7 eguia abEscape,741 bloomEscMabAvg,745 bloomEscMax,751 bloomEscSerumAvg,746 bloomEscTop,749 escape,748 mccoy,741 rappuoli,748 eguinoa Q0_tracks,1245 Q1_tracks,1247 Q2_tracks,1247 Q3_tracks,1247 galaxyEna,1247 galaxyEnaQ0Ba-1,1243 galaxyEnaQ0Ba-1-1,1243 galaxyEnaQ0Ba-1-1-11,1243 galaxyEnaQ0Ba-1-17,1243 galaxyEnaQ0Ba-2,1243 galaxyEnaQ1Ay-4,1243 galaxyEnaQ1Ay-4-2,1243 galaxyEnaQ1Ay-4-2-2,1243 galaxyEnaQ1Ay-43,1243 galaxyEnaQ1Ba-1-17,1243 galaxyEnaQ2Ay-120,1243 galaxyEnaQ2Ay-122,1243 galaxyEnaQ2Ay-4,1243 galaxyEnaQ2Ay-5,1243 galaxyEnaQ2Ay-6,1243 galaxyEnaQ3Ay-4,1243 galaxyEnaQ3Ay-5,1243 galaxyEnaQ3Ay-9,1243 galaxyEnaQ3B-1-1-7,1243 galaxyEnaQ3B-1-617-2,1243 eight rapid,90 either cas13Crispr,56 gap,86 ek sarsCov2Phylo,975 sarsCov2PhyloPub,1095 element rfam,33 strainCons119way,189 strainCons119way,2101 strainCons119wayViewphastcons,1 strainCons44way,137 strainCons44way,1696 strainCons44wayViewphastcons,2 elements multiz7way,1060 strainCons119way,153 strainCons119way,268 strainCons119way,2000 strainCons119way,2065 strainCons119way,2068 strainCons119way,2080 strainCons119way,2438 strainCons44way,101 strainCons44way,216 strainCons44way,1595 strainCons44way,1660 strainCons44way,1663 strainCons44way,1675 strainCons44way,2033 elicit pbmShanghai,522 elicited cd8escape,53 elitza abEscape,791 bloomEscMabAvg,795 bloomEscMax,801 bloomEscSerumAvg,796 bloomEscTop,799 escape,798 mccoy,791 rappuoli,798 ellebedy abEscape,796 bloomEscMabAvg,800 bloomEscMax,806 bloomEscSerumAvg,801 bloomEscTop,804 escape,803 mccoy,796 rappuoli,803 ellis Starr_Bloom,244 Starr_Bloom_bind,238 elnitski multiz7way,1173 strainCons119way,2551 strainCons44way,2146 elongating Calu3_07hpi,163 ORFs,161 Vero6_05hpi,163 Vero6_24hpi,163 weizmanOrfs,169 elongation Calu3_07hpi,176 ORFs,174 Vero6_05hpi,176 Vero6_24hpi,176 weizmanOrfs,182 elsevier genscan,202 elucidate PhyloCSF_smooth,766 PhyloCSFpower,745 elucidates PhyloCSF_smooth,790 PhyloCSFpower,767 multiz7way,955 strainCons119way,2333 strainCons44way,1928 eluted rosettaMhc,207 rosettaMhc,265 elworth treangen,300 em strainCons119way,1726 strainCons44way,1321 windowmaskerSdust,93 emami iedb,103 emergence epitopes,174 variantMuts,1371 variantMuts,1400 emergent variantMuts,1306 emerging Q0_tracks,413 Q0_tracks,460 Q0_tracks,1280 Q1_tracks,415 Q1_tracks,462 Q1_tracks,1282 Q2_tracks,415 Q2_tracks,462 Q2_tracks,1282 Q3_tracks,415 Q3_tracks,462 Q3_tracks,1282 galaxyEna,415 galaxyEna,462 galaxyEna,1282 galaxyEnaQ0Ba-1,411 galaxyEnaQ0Ba-1,458 galaxyEnaQ0Ba-1,1278 galaxyEnaQ0Ba-1-1,411 galaxyEnaQ0Ba-1-1,458 galaxyEnaQ0Ba-1-1,1278 galaxyEnaQ0Ba-1-1-11,411 galaxyEnaQ0Ba-1-1-11,458 galaxyEnaQ0Ba-1-1-11,1278 galaxyEnaQ0Ba-1-17,411 galaxyEnaQ0Ba-1-17,458 galaxyEnaQ0Ba-1-17,1278 galaxyEnaQ0Ba-2,411 galaxyEnaQ0Ba-2,458 galaxyEnaQ0Ba-2,1278 galaxyEnaQ1Ay-4,411 galaxyEnaQ1Ay-4,458 galaxyEnaQ1Ay-4,1278 galaxyEnaQ1Ay-4-2,411 galaxyEnaQ1Ay-4-2,458 galaxyEnaQ1Ay-4-2,1278 galaxyEnaQ1Ay-4-2-2,411 galaxyEnaQ1Ay-4-2-2,458 galaxyEnaQ1Ay-4-2-2,1278 galaxyEnaQ1Ay-43,411 galaxyEnaQ1Ay-43,458 galaxyEnaQ1Ay-43,1278 galaxyEnaQ1Ba-1-17,411 galaxyEnaQ1Ba-1-17,458 galaxyEnaQ1Ba-1-17,1278 galaxyEnaQ2Ay-120,411 galaxyEnaQ2Ay-120,458 galaxyEnaQ2Ay-120,1278 galaxyEnaQ2Ay-122,411 galaxyEnaQ2Ay-122,458 galaxyEnaQ2Ay-122,1278 galaxyEnaQ2Ay-4,411 galaxyEnaQ2Ay-4,458 galaxyEnaQ2Ay-4,1278 galaxyEnaQ2Ay-5,411 galaxyEnaQ2Ay-5,458 galaxyEnaQ2Ay-5,1278 galaxyEnaQ2Ay-6,411 galaxyEnaQ2Ay-6,458 galaxyEnaQ2Ay-6,1278 galaxyEnaQ3Ay-4,411 galaxyEnaQ3Ay-4,458 galaxyEnaQ3Ay-4,1278 galaxyEnaQ3Ay-5,411 galaxyEnaQ3Ay-5,458 galaxyEnaQ3Ay-5,1278 galaxyEnaQ3Ay-9,411 galaxyEnaQ3Ay-9,458 galaxyEnaQ3Ay-9,1278 galaxyEnaQ3B-1-1-7,411 galaxyEnaQ3B-1-1-7,458 galaxyEnaQ3B-1-1-7,1278 galaxyEnaQ3B-1-617-2,411 galaxyEnaQ3B-1-617-2,458 galaxyEnaQ3B-1-617-2,1278 problematicSites,198 emily variantMuts,1473 emission PhyloCSF_smooth,452 PhyloCSFpower,467 emissions PhyloCSF_smooth,464 PhyloCSF_smooth,500 PhyloCSFpower,479 PhyloCSFpower,515 emma spikeMuts,358 spikeMuts,394 empowers sarsCov2PhyloPub,1243 ena Q0_tracks,2 Q1_tracks,2 Q2_tracks,2 Q3_tracks,2 galaxyEna,2 enable multiz7way,787 rapid,35 strainCons119way,1659 strainCons44way,1254 enables nextstrainSamples,814 enabling swift,33 encoded vaccines,439 encoding Q0_tracks,501 Q1_tracks,503 Q2_tracks,503 Q3_tracks,503 galaxyEna,503 galaxyEnaQ0Ba-1,499 galaxyEnaQ0Ba-1-1,499 galaxyEnaQ0Ba-1-1-11,499 galaxyEnaQ0Ba-1-17,499 galaxyEnaQ0Ba-2,499 galaxyEnaQ1Ay-4,499 galaxyEnaQ1Ay-4-2,499 galaxyEnaQ1Ay-4-2-2,499 galaxyEnaQ1Ay-43,499 galaxyEnaQ1Ba-1-17,499 galaxyEnaQ2Ay-120,499 galaxyEnaQ2Ay-122,499 galaxyEnaQ2Ay-4,499 galaxyEnaQ2Ay-5,499 galaxyEnaQ2Ay-6,499 galaxyEnaQ3Ay-4,499 galaxyEnaQ3Ay-5,499 galaxyEnaQ3Ay-9,499 galaxyEnaQ3B-1-1-7,499 galaxyEnaQ3B-1-617-2,499 vaccines,555 encompassing microdel,89 end IgG_Z-score-_COVID-19_patients,381 IgM_Z-score-_COVID-19_patients,381 Q0_tracks,329 Q1_tracks,331 Q2_tracks,331 Q3_tracks,331 artic,163 articV4,163 articV4_1,176 bpmIggCovidSum,390 bpmIgmCovidSum,390 cas13Crispr,448 contacts,376 galaxyEna,331 galaxyEnaQ0Ba-1,327 galaxyEnaQ0Ba-1-1,327 galaxyEnaQ0Ba-1-1-11,327 galaxyEnaQ0Ba-1-17,327 galaxyEnaQ0Ba-2,327 galaxyEnaQ1Ay-4,327 galaxyEnaQ1Ay-4-2,327 galaxyEnaQ1Ay-4-2-2,327 galaxyEnaQ1Ay-43,327 galaxyEnaQ1Ba-1-17,327 galaxyEnaQ2Ay-120,327 galaxyEnaQ2Ay-122,327 galaxyEnaQ2Ay-4,327 galaxyEnaQ2Ay-5,327 galaxyEnaQ2Ay-6,327 galaxyEnaQ3Ay-4,327 galaxyEnaQ3Ay-5,327 galaxyEnaQ3Ay-9,327 galaxyEnaQ3B-1-1-7,327 galaxyEnaQ3B-1-617-2,327 icshape,133 icshape,153 kimRnaMod,210 kimTranscripts,166 kimTranscripts,428 ncbiGeneBGP,143 ncbiProducts,159 nextstrainFreq,222 nextstrainFreq,242 pbm,390 phyloGenes,281 phyloGenes,425 poranHla1,238 poranHla2,238 rapid,317 swift,246 transcriptome,291 transcriptome,302 transcriptome,434 unipCov2AliSwissprot,374 unipCov2Chain,77 unipCov2Chain,99 unipCov2Chain,604 unipCov2DisulfBond,73 unipCov2DisulfBond,95 unipCov2DisulfBond,600 unipCov2Domain,72 unipCov2Domain,94 unipCov2Domain,599 unipCov2Interest,280 unipCov2LocCytopl,72 unipCov2LocCytopl,94 unipCov2LocCytopl,599 unipCov2LocExtra,72 unipCov2LocExtra,94 unipCov2LocExtra,599 unipCov2LocSignal,73 unipCov2LocSignal,95 unipCov2LocSignal,600 unipCov2LocTransMemb,73 unipCov2LocTransMemb,95 unipCov2LocTransMemb,600 unipCov2Modif,76 unipCov2Modif,98 unipCov2Modif,603 unipCov2Mut,73 unipCov2Mut,95 unipCov2Mut,600 unipCov2Other,73 unipCov2Other,95 unipCov2Other,600 unipCov2Repeat,71 unipCov2Repeat,93 unipCov2Repeat,598 unipCov2Struct,75 unipCov2Struct,97 unipCov2Struct,602 varskip,169 ending phyloGenes,288 endler cd8escape,203 ends icshape,63 problematicSites,369 transcriptome,313 energies rosettaMhc,242 rosettaMhc,297 rosettaMhc,319 energy rosettaMhc,214 rosettaMhc,233 rosettaMhc,237 engineered contacts,269 engineering vaccines,532 vaccines,604 england strainCons119way,1330 variantMuts,1353 varskip,5 enhancement potPathoIndel,52 enough nextstrainSamples,570 nextstrainSamples,578 ensured cas13Crispr,308 enteric strainCons119way,1467 entire IgG_Z-score-_COVID-19_patients,29 IgM_Z-score-_COVID-19_patients,29 Q0_tracks,1040 Q1_tracks,1042 Q2_tracks,1042 Q3_tracks,1042 bpmIggCovidSum,38 bpmIgmCovidSum,38 cpgIslandExt,301 cpgIslandExtUnmasked,304 cpgIslandSuper,301 galaxyEna,1042 galaxyEnaQ0Ba-1,1038 galaxyEnaQ0Ba-1-1,1038 galaxyEnaQ0Ba-1-1-11,1038 galaxyEnaQ0Ba-1-17,1038 galaxyEnaQ0Ba-2,1038 galaxyEnaQ1Ay-4,1038 galaxyEnaQ1Ay-4-2,1038 galaxyEnaQ1Ay-4-2-2,1038 galaxyEnaQ1Ay-43,1038 galaxyEnaQ1Ba-1-17,1038 galaxyEnaQ2Ay-120,1038 galaxyEnaQ2Ay-122,1038 galaxyEnaQ2Ay-4,1038 galaxyEnaQ2Ay-5,1038 galaxyEnaQ2Ay-6,1038 galaxyEnaQ3Ay-4,1038 galaxyEnaQ3Ay-5,1038 galaxyEnaQ3Ay-9,1038 galaxyEnaQ3B-1-1-7,1038 galaxyEnaQ3B-1-617-2,1038 microdel,91 pbm,38 swift,48 variantMuts,966 windowmaskerSdust,37 entries rfam,127 entropy Entropy,2 Entropy,4 pyle,152 pyle,156 pyle,177 pyle,204 entry ncbiGeneBGP,32 ncbiProducts,35 envelope cd8escape,111 epi_isl_402125 nextstrainSamples,873 sarsCov2Phylo,605 sarsCov2PhyloPub,632 epi_isl_406801 sarsCov2Phylo,675 sarsCov2PhyloPub,699 epicov nextstrainFreq,364 nextstrainParsimony,293 nextstrainSamples,7 nextstrainSamples,746 nextstrainSamples19A,11 nextstrainSamples19B,11 nextstrainSamples20A,11 nextstrainSamples20B,11 nextstrainSamples20C,11 nextstrainSamples20D,11 nextstrainSamples20F,11 nextstrainSamples20G,11 nextstrainSamples21A_Delta,13 nextstrainSamples21B_Kappa,13 nextstrainSamples21D_Eta,13 nextstrainSamples21E_Theta,13 nextstrainSamples21F_Iota,13 nextstrainSamples21G_Lambda,13 nextstrainSamples21H_Mu,13 nextstrainSamples21I_Delta,13 nextstrainSamples21J_Delta,13 nextstrainSamplesAll,8 nextstrainSamplesRb,11 nextstrainSamplesViewAll,7 nextstrainSamplesViewNewClades,7 sarsCov2Phylo,14 sarsCov2PhyloFull,9 sarsCov2PhyloMinAf001,15 sarsCov2PhyloMinAf01,15 sarsCov2PhyloPub,605 epidemic strainCons119way,1431 epidemiological variantMuts,158 variantMuts,1357 epidemiology sarsCov2Phylo,962 sarsCov2PhyloPub,1082 variantMuts,1269 epitope epitopes,18 epitopes,216 epitopes,248 iedb,14 iedb,35 iedb,66 iedb,71 iedb,81 iedb,117 epitopeid iedb,74 epitopes M1_library,6 M2_library,6 bCellEpitopes,5 cd4Epitopes,5 cd8Epitopes,5 cd8escape,32 cd8escape,122 cd8escape,148 cd8escape,217 epitopes,4 epitopes,90 epitopes,275 iedb,2 iedb,6 iedb,40 iedb,50 pbmShanghai,517 poranHla1,6 poranHla1,13 poranHla1,44 poranHla1,54 poranHla1,87 poranHla2,6 poranHla2,13 poranHla2,44 poranHla2,54 poranHla2,87 rosettaMhc,4 rosettaMhc,38 rosettaMhc,82 rosettaMhc,98 rosettaMhc,172 rosettaMhc,190 rosettaMhc,200 rosettaMhc,246 rosettaMhc,270 rosettaMhc,301 targets,2 targets,5 targets,60 epsilon variantAaMutsV2_B_1_429,1 variantAaMutsV2_B_1_429,4 variantMuts,658 variantNucMutsV2_B_1_429,1 variantNucMutsV2_B_1_429,4 equal strainCons119way,2107 strainCons44way,1702 eric rfam,120 erinaceuscov strainCons119way,1321 errico abEscape,790 bloomEscMabAvg,794 bloomEscMax,800 bloomEscSerumAvg,795 bloomEscTop,798 escape,797 mccoy,790 rappuoli,797 erroneous targets,208 error problematicSites,377 problematicSites,426 errors nextstrainParsimony,238 problematicSites,39 problematicSites,56 problematicSites,209 escape A_120Max,7 A_120Total,7 A_21Max,7 A_21Total,7 A_45Max,7 A_45Total,7 B_113Max,7 B_113Total,7 B_26Max,7 B_26Total,7 COV2-2050Max,5 COV2-2050Total,6 COV2-2082Max,5 COV2-2082Total,6 COV2-2094Max,5 COV2-2094Total,6 COV2-2096Max,5 COV2-2096Total,6 COV2-2165Max,5 COV2-2165Total,6 COV2-2479Max,5 COV2-2479Total,6 COV2-2499Max,5 COV2-2499Total,6 COV2-2677Max,5 COV2-2677Total,6 COV2-2832Max,5 COV2-2832Total,6 C_104Max,7 C_104Total,7 C_32Max,7 C_32Total,7 D_33Max,7 D_33Total,7 D_76Max,7 D_76Total,7 E_104Max,7 E_104Total,7 E_28Max,7 E_28Total,7 F_115Max,7 F_115Total,7 F_48Max,7 F_48Total,7 G_18Max,7 G_18Total,7 G_94Max,7 G_94Total,7 H_152Max,7 H_152Total,7 H_61Max,7 H_61Total,7 I_102Max,7 I_102Total,7 I_26Max,7 I_26Total,7 J_121Max,7 J_121Total,7 J_15Max,7 J_15Total,7 K_103Max,7 K_103Total,7 K_29Max,7 K_29Total,7 LY-CoV016Max,5 LY-CoV016Total,6 REGN10933-REGN10987Max,5 REGN10933-REGN10987Total,6 REGN10933Max,5 REGN10933Total,6 REGN10987Max,5 REGN10987Total,6 abEscape,2 abEscape,3 abEscape,26 abEscape,175 abEscape,279 abEscape,301 abEscape,327 abEscape,342 abEscape,371 abEscape,430 abEscape,758 abEscape,810 abEscape,847 abEscape,884 bloomEscMabAvg,10 bloomEscMabAvg,30 bloomEscMabAvg,179 bloomEscMabAvg,283 bloomEscMabAvg,305 bloomEscMabAvg,331 bloomEscMabAvg,346 bloomEscMabAvg,375 bloomEscMabAvg,434 bloomEscMabAvg,762 bloomEscMabAvg,814 bloomEscMabAvg,851 bloomEscMabAvg,888 bloomEscMax,3 bloomEscMax,9 bloomEscMax,11 bloomEscMax,36 bloomEscMax,185 bloomEscMax,289 bloomEscMax,311 bloomEscMax,337 bloomEscMax,352 bloomEscMax,381 bloomEscMax,440 bloomEscMax,768 bloomEscMax,820 bloomEscMax,857 bloomEscMax,894 bloomEscSerumAvg,11 bloomEscSerumAvg,31 bloomEscSerumAvg,180 bloomEscSerumAvg,284 bloomEscSerumAvg,306 bloomEscSerumAvg,332 bloomEscSerumAvg,347 bloomEscSerumAvg,376 bloomEscSerumAvg,435 bloomEscSerumAvg,763 bloomEscSerumAvg,815 bloomEscSerumAvg,852 bloomEscSerumAvg,889 bloomEscTop,10 bloomEscTop,34 bloomEscTop,183 bloomEscTop,287 bloomEscTop,309 bloomEscTop,335 bloomEscTop,350 bloomEscTop,379 bloomEscTop,438 bloomEscTop,766 bloomEscTop,818 bloomEscTop,855 bloomEscTop,892 bloomEscTotal,3 bloomEscTotal,9 bloomEscTotal,11 cd8escape,2 cd8escape,7 escape,11 escape,33 escape,182 escape,286 escape,308 escape,334 escape,349 escape,378 escape,437 escape,765 escape,817 escape,854 escape,891 mccoy,2 mccoy,26 mccoy,175 mccoy,279 mccoy,301 mccoy,327 mccoy,342 mccoy,371 mccoy,430 mccoy,758 mccoy,810 mccoy,847 mccoy,884 rCR3022Max,5 rCR3022Total,6 rappuoli,3 rappuoli,11 rappuoli,33 rappuoli,182 rappuoli,286 rappuoli,308 rappuoli,334 rappuoli,349 rappuoli,378 rappuoli,437 rappuoli,765 rappuoli,817 rappuoli,854 rappuoli,891 spikeMuts,191 especially nextstrainParsimony,216 essential epitopes,151 est Entropy,17 SHAPE,13 icshape,9 icshapeInvitro,7 icshapeInvivo,7 pyle,13 rfam,6 rnaStructRangan,10 establish multiz7way,485 recomb,254 strainCons119way,835 strainCons44way,783 estimates strainCons119way,179 strainCons44way,127 estimating nextstrainSamples,1070 estonian Q0_tracks,1220 Q1_tracks,1222 Q2_tracks,1222 Q3_tracks,1222 galaxyEna,1222 galaxyEnaQ0Ba-1,1218 galaxyEnaQ0Ba-1-1,1218 galaxyEnaQ0Ba-1-1-11,1218 galaxyEnaQ0Ba-1-17,1218 galaxyEnaQ0Ba-2,1218 galaxyEnaQ1Ay-4,1218 galaxyEnaQ1Ay-4-2,1218 galaxyEnaQ1Ay-4-2-2,1218 galaxyEnaQ1Ay-43,1218 galaxyEnaQ1Ba-1-17,1218 galaxyEnaQ2Ay-120,1218 galaxyEnaQ2Ay-122,1218 galaxyEnaQ2Ay-4,1218 galaxyEnaQ2Ay-5,1218 galaxyEnaQ2Ay-6,1218 galaxyEnaQ3Ay-4,1218 galaxyEnaQ3Ay-5,1218 galaxyEnaQ3Ay-9,1218 galaxyEnaQ3B-1-1-7,1218 galaxyEnaQ3B-1-617-2,1218 et Calu3_07hpi,80 Calu3_07hpi,366 Kim_RNAs,11 Kim_TRS_sgmRNAs,11 Kim_non-TRS_sgmRNAs,11 ORFs,78 ORFs,364 PhyloCSF_smooth,371 PhyloCSF_smooth,376 PhyloCSF_smooth,694 PhyloCSF_smooth,699 PhyloCSF_smooth,752 PhyloCSFpower,386 PhyloCSFpower,392 PhyloCSFpower,660 PhyloCSFpower,666 Starr_Bloom,174 Starr_Bloom,258 Starr_Bloom_bind,168 Starr_Bloom_bind,252 Vero6_05hpi,80 Vero6_05hpi,366 Vero6_24hpi,80 Vero6_24hpi,366 abEscape,110 abEscape,127 abEscape,150 abEscape,183 abEscape,210 abEscape,227 abEscape,589 abEscape,626 abEscape,745 abEscape,881 bloomEscMabAvg,114 bloomEscMabAvg,131 bloomEscMabAvg,154 bloomEscMabAvg,187 bloomEscMabAvg,214 bloomEscMabAvg,231 bloomEscMabAvg,593 bloomEscMabAvg,630 bloomEscMabAvg,749 bloomEscMabAvg,885 bloomEscMax,120 bloomEscMax,137 bloomEscMax,160 bloomEscMax,193 bloomEscMax,220 bloomEscMax,237 bloomEscMax,599 bloomEscMax,636 bloomEscMax,755 bloomEscMax,891 bloomEscSerumAvg,115 bloomEscSerumAvg,132 bloomEscSerumAvg,155 bloomEscSerumAvg,188 bloomEscSerumAvg,215 bloomEscSerumAvg,232 bloomEscSerumAvg,594 bloomEscSerumAvg,631 bloomEscSerumAvg,750 bloomEscSerumAvg,886 bloomEscTop,118 bloomEscTop,135 bloomEscTop,158 bloomEscTop,191 bloomEscTop,218 bloomEscTop,235 bloomEscTop,597 bloomEscTop,634 bloomEscTop,753 bloomEscTop,889 bpmIggCovidSum,12 bpmIgmCovidSum,12 cas13Crispr,28 cas13Crispr,505 cd8escape,11 cd8escape,87 cd8escape,211 cpgIslandExt,377 cpgIslandExtUnmasked,380 cpgIslandSuper,377 epitopes,7 escape,117 escape,134 escape,157 escape,190 escape,217 escape,234 escape,596 escape,633 escape,752 escape,888 gordon2,8 gordon2,22 gordon2,255 kimIvtCov,11 kimIvtCov,28 kimIvtCov,126 kimIvtCov,145 kimMgiNc3p,5 kimMgiNc5p,5 kimNp,8 kimNp,39 kimRnaMod,9 kimRnaMod,40 kimTranscripts,11 kimTranscripts,148 kimTranscripts,248 kimTranscripts,289 mccoy,110 mccoy,127 mccoy,150 mccoy,183 mccoy,210 mccoy,227 mccoy,589 mccoy,626 mccoy,745 mccoy,881 multiz7way,951 multiz7way,1056 multiz7way,1187 pbm,13 pbmShanghai,13 pbmShanghai,514 phyloGenes,487 pond,230 pond,240 pond,272 potPathoIndel,11 problematicSites,406 problematicSites,411 problematicSites,414 pyle,62 pyle,67 rappuoli,117 rappuoli,134 rappuoli,157 rappuoli,190 rappuoli,217 rappuoli,234 rappuoli,596 rappuoli,633 rappuoli,752 rappuoli,888 recomb,7 recomb,36 recomb,79 recomb,343 rnaStructRangan,4 rnaStructRangan,24 sarsCov2Phylo,133 sarsCov2Phylo,150 sarsCov2Phylo,610 sarsCov2Phylo,624 sarsCov2Phylo,627 sarsCov2Phylo,645 sarsCov2Phylo,664 sarsCov2Phylo,699 sarsCov2Phylo,993 sarsCov2PhyloPub,144 sarsCov2PhyloPub,156 sarsCov2PhyloPub,637 sarsCov2PhyloPub,651 sarsCov2PhyloPub,669 sarsCov2PhyloPub,688 sarsCov2PhyloPub,806 sarsCov2PhyloPub,1113 strainCons119way,1965 strainCons119way,2329 strainCons119way,2434 strainCons119way,2565 strainCons44way,1560 strainCons44way,1924 strainCons44way,2029 strainCons44way,2160 targets,18 targets,231 transcriptome,262 transcriptome,332 treangen,70 treangen,156 treangen,312 variantMuts,1299 variantMuts,1345 variantMuts,1366 variantMuts,1413 weizmanOrfs,86 weizmanOrfs,372 eta nextstrainFreq21D_Eta,2 nextstrainFreq21D_Eta,5 nextstrainSamples21D_Eta,2 nextstrainSamples21D_Eta,8 variantAaMutsV2_B_1_525,1 variantAaMutsV2_B_1_525,4 variantMuts,674 variantMuts,1077 variantNucMutsV2_B_1_525,1 variantNucMutsV2_B_1_525,4 etc Q0_tracks,1025 Q1_tracks,1027 Q2_tracks,1027 Q3_tracks,1027 galaxyEna,1027 galaxyEnaQ0Ba-1,1023 galaxyEnaQ0Ba-1-1,1023 galaxyEnaQ0Ba-1-1-11,1023 galaxyEnaQ0Ba-1-17,1023 galaxyEnaQ0Ba-2,1023 galaxyEnaQ1Ay-4,1023 galaxyEnaQ1Ay-4-2,1023 galaxyEnaQ1Ay-4-2-2,1023 galaxyEnaQ1Ay-43,1023 galaxyEnaQ1Ba-1-17,1023 galaxyEnaQ2Ay-120,1023 galaxyEnaQ2Ay-122,1023 galaxyEnaQ2Ay-4,1023 galaxyEnaQ2Ay-5,1023 galaxyEnaQ2Ay-6,1023 galaxyEnaQ3Ay-4,1023 galaxyEnaQ3Ay-5,1023 galaxyEnaQ3Ay-9,1023 galaxyEnaQ3B-1-1-7,1023 galaxyEnaQ3B-1-617-2,1023 nextstrainClade,10 nextstrainSamples,169 nextstrainSamples,300 unipCov2AliSwissprot,105 unipCov2Chain,290 unipCov2DisulfBond,286 unipCov2Domain,285 unipCov2LocCytopl,285 unipCov2LocExtra,285 unipCov2LocSignal,286 unipCov2LocTransMemb,286 unipCov2Modif,289 unipCov2Mut,286 unipCov2Other,286 unipCov2Repeat,284 unipCov2Struct,288 eu-drosten primers,200 eugene potPathoIndel,217 euml vaccines,568 eun vaccines,492 eur poranHla1,65 poranHla2,65 eur_coverage poranHla1,71 poranHla2,71 euro sarsCov2Phylo,1011 sarsCov2PhyloPub,1131 european Q0_tracks,823 Q1_tracks,825 Q2_tracks,825 Q3_tracks,825 galaxyEna,825 galaxyEnaQ0Ba-1,821 galaxyEnaQ0Ba-1-1,821 galaxyEnaQ0Ba-1-1-11,821 galaxyEnaQ0Ba-1-17,821 galaxyEnaQ0Ba-2,821 galaxyEnaQ1Ay-4,821 galaxyEnaQ1Ay-4-2,821 galaxyEnaQ1Ay-4-2-2,821 galaxyEnaQ1Ay-43,821 galaxyEnaQ1Ba-1-17,821 galaxyEnaQ2Ay-120,821 galaxyEnaQ2Ay-122,821 galaxyEnaQ2Ay-4,821 galaxyEnaQ2Ay-5,821 galaxyEnaQ2Ay-6,821 galaxyEnaQ3Ay-4,821 galaxyEnaQ3Ay-5,821 galaxyEnaQ3Ay-9,821 galaxyEnaQ3B-1-1-7,821 galaxyEnaQ3B-1-617-2,821 poranHla1,29 poranHla2,29 sarsCov2Phylo,1005 sarsCov2PhyloPub,1125 evade cd8escape,218 evading cd8escape,82 evaluated cpgIslandExt,257 cpgIslandExtUnmasked,260 cpgIslandSuper,257 evaluating strainCons119way,278 strainCons44way,226 evaluation epitopes,162 even rapid,95 recomb,165 events kimTranscripts,321 problematicSites,278 ever Q0_tracks,622 Q0_tracks,1044 Q1_tracks,624 Q1_tracks,1046 Q2_tracks,624 Q2_tracks,1046 Q3_tracks,624 Q3_tracks,1046 galaxyEna,624 galaxyEna,1046 galaxyEnaQ0Ba-1,620 galaxyEnaQ0Ba-1,1042 galaxyEnaQ0Ba-1-1,620 galaxyEnaQ0Ba-1-1,1042 galaxyEnaQ0Ba-1-1-11,620 galaxyEnaQ0Ba-1-1-11,1042 galaxyEnaQ0Ba-1-17,620 galaxyEnaQ0Ba-1-17,1042 galaxyEnaQ0Ba-2,620 galaxyEnaQ0Ba-2,1042 galaxyEnaQ1Ay-4,620 galaxyEnaQ1Ay-4,1042 galaxyEnaQ1Ay-4-2,620 galaxyEnaQ1Ay-4-2,1042 galaxyEnaQ1Ay-4-2-2,620 galaxyEnaQ1Ay-4-2-2,1042 galaxyEnaQ1Ay-43,620 galaxyEnaQ1Ay-43,1042 galaxyEnaQ1Ba-1-17,620 galaxyEnaQ1Ba-1-17,1042 galaxyEnaQ2Ay-120,620 galaxyEnaQ2Ay-120,1042 galaxyEnaQ2Ay-122,620 galaxyEnaQ2Ay-122,1042 galaxyEnaQ2Ay-4,620 galaxyEnaQ2Ay-4,1042 galaxyEnaQ2Ay-5,620 galaxyEnaQ2Ay-5,1042 galaxyEnaQ2Ay-6,620 galaxyEnaQ2Ay-6,1042 galaxyEnaQ3Ay-4,620 galaxyEnaQ3Ay-4,1042 galaxyEnaQ3Ay-5,620 galaxyEnaQ3Ay-5,1042 galaxyEnaQ3Ay-9,620 galaxyEnaQ3Ay-9,1042 galaxyEnaQ3B-1-1-7,620 galaxyEnaQ3B-1-1-7,1042 galaxyEnaQ3B-1-617-2,620 galaxyEnaQ3B-1-617-2,1042 every PhyloCSF_smooth,391 PhyloCSF_smooth,394 PhyloCSFpower,406 PhyloCSFpower,409 Q0_tracks,938 Q1_tracks,940 Q2_tracks,940 Q3_tracks,940 galaxyEna,940 galaxyEnaQ0Ba-1,936 galaxyEnaQ0Ba-1-1,936 galaxyEnaQ0Ba-1-1-11,936 galaxyEnaQ0Ba-1-17,936 galaxyEnaQ0Ba-2,936 galaxyEnaQ1Ay-4,936 galaxyEnaQ1Ay-4-2,936 galaxyEnaQ1Ay-4-2-2,936 galaxyEnaQ1Ay-43,936 galaxyEnaQ1Ba-1-17,936 galaxyEnaQ2Ay-120,936 galaxyEnaQ2Ay-122,936 galaxyEnaQ2Ay-4,936 galaxyEnaQ2Ay-5,936 galaxyEnaQ2Ay-6,936 galaxyEnaQ3Ay-4,936 galaxyEnaQ3Ay-5,936 galaxyEnaQ3Ay-9,936 galaxyEnaQ3B-1-1-7,936 galaxyEnaQ3B-1-617-2,936 kimIvtCov,93 pbmShanghai,202 pbmShanghai,209 evidence Q0_tracks,411 Q1_tracks,413 Q2_tracks,413 Q3_tracks,413 galaxyEna,413 galaxyEnaQ0Ba-1,409 galaxyEnaQ0Ba-1-1,409 galaxyEnaQ0Ba-1-1-11,409 galaxyEnaQ0Ba-1-17,409 galaxyEnaQ0Ba-2,409 galaxyEnaQ1Ay-4,409 galaxyEnaQ1Ay-4-2,409 galaxyEnaQ1Ay-4-2-2,409 galaxyEnaQ1Ay-43,409 galaxyEnaQ1Ba-1-17,409 galaxyEnaQ2Ay-120,409 galaxyEnaQ2Ay-122,409 galaxyEnaQ2Ay-4,409 galaxyEnaQ2Ay-5,409 galaxyEnaQ2Ay-6,409 galaxyEnaQ3Ay-4,409 galaxyEnaQ3Ay-5,409 galaxyEnaQ3Ay-9,409 galaxyEnaQ3B-1-1-7,409 galaxyEnaQ3B-1-617-2,409 phyloGenes,40 phyloGenes,60 phyloGenes,69 phyloGenes,172 problematicSites,26 pyle,181 treangen,27 variantMuts,101 variantMuts,136 evol multiz7way,1001 nextstrainFreq,423 nextstrainSamples,1043 nextstrainSamples,1075 pond,293 sarsCov2Phylo,1039 sarsCov2PhyloPub,1159 strainCons119way,2379 strainCons44way,1974 evolution multiz7way,998 multiz7way,1095 multiz7way,1110 multiz7way,1136 nextstrainClade,265 nextstrainFreq,400 nextstrainGene,214 nextstrainParsimony,467 nextstrainSamples,1020 pond,141 strainCons119way,310 strainCons119way,323 strainCons119way,370 strainCons119way,2376 strainCons119way,2473 strainCons119way,2488 strainCons119way,2514 strainCons44way,258 strainCons44way,271 strainCons44way,318 strainCons44way,1971 strainCons44way,2068 strainCons44way,2083 strainCons44way,2109 evolutionarily multiz7way,1058 strainCons119way,2436 strainCons44way,2031 evolutionary PhyloCSF_smooth,9 PhyloCSF_smooth,28 PhyloCSFpower,24 PhyloCSFpower,43 cpgIslandExt,98 cpgIslandExtUnmasked,101 cpgIslandSuper,98 nextstrainGene,35 nextstrainSamples,50 recomb,116 recomb,142 strainCons119way,115 strainCons119way,1691 strainCons44way,63 strainCons44way,1286 evolving strainCons119way,1695 strainCons44way,1290 exact IgG_Z-score-_COVID-19_patients,272 IgM_Z-score-_COVID-19_patients,272 abEscape,492 bloomEscMabAvg,496 bloomEscMax,502 bloomEscSerumAvg,497 bloomEscTop,500 bpmIggCovidSum,281 bpmIgmCovidSum,281 escape,499 kimRnaMod,73 mccoy,492 pbm,281 pbmShanghai,398 rappuoli,499 transcriptome,324 unipCov2AliSwissprot,298 unipCov2Chain,528 unipCov2DisulfBond,524 unipCov2Domain,523 unipCov2Interest,204 unipCov2LocCytopl,523 unipCov2LocExtra,523 unipCov2LocSignal,524 unipCov2LocTransMemb,524 unipCov2Modif,527 unipCov2Mut,524 unipCov2Other,524 unipCov2Repeat,522 unipCov2Struct,526 exactly IgG_Z-score-_COVID-19_patients,171 IgM_Z-score-_COVID-19_patients,171 bpmIggCovidSum,180 bpmIgmCovidSum,180 pbm,180 examines PhyloCSF_smooth,27 PhyloCSFpower,42 examining cd8escape,30 example IgG_Z-score-_COVID-19_patients,368 IgM_Z-score-_COVID-19_patients,368 PhyloCSF_smooth,299 PhyloCSFpower,314 Q0_tracks,705 Q1_tracks,707 Q2_tracks,707 Q3_tracks,707 artic,151 articV4,151 articV4_1,164 bpmIggCovidSum,377 bpmIgmCovidSum,377 cas13Crispr,436 contacts,265 contacts,364 galaxyEna,707 galaxyEnaQ0Ba-1,703 galaxyEnaQ0Ba-1-1,703 galaxyEnaQ0Ba-1-1-11,703 galaxyEnaQ0Ba-1-17,703 galaxyEnaQ0Ba-2,703 galaxyEnaQ1Ay-4,703 galaxyEnaQ1Ay-4-2,703 galaxyEnaQ1Ay-4-2-2,703 galaxyEnaQ1Ay-43,703 galaxyEnaQ1Ba-1-17,703 galaxyEnaQ2Ay-120,703 galaxyEnaQ2Ay-122,703 galaxyEnaQ2Ay-4,703 galaxyEnaQ2Ay-5,703 galaxyEnaQ2Ay-6,703 galaxyEnaQ3Ay-4,703 galaxyEnaQ3Ay-5,703 galaxyEnaQ3Ay-9,703 galaxyEnaQ3B-1-1-7,703 galaxyEnaQ3B-1-617-2,703 icshape,142 kimRnaMod,198 kimTranscripts,415 ncbiGeneBGP,132 ncbiProducts,148 nextstrainFreq,231 nextstrainParsimony,132 pbm,377 phyloGenes,412 poranHla1,225 poranHla2,225 rapid,305 swift,234 transcriptome,421 unipCov2AliSwissprot,362 unipCov2Chain,592 unipCov2DisulfBond,588 unipCov2Domain,587 unipCov2Interest,268 unipCov2LocCytopl,587 unipCov2LocExtra,587 unipCov2LocSignal,588 unipCov2LocTransMemb,588 unipCov2Modif,591 unipCov2Mut,588 unipCov2Other,588 unipCov2Repeat,586 unipCov2Struct,590 varskip,157 examples Q0_tracks,90 Q1_tracks,92 Q2_tracks,92 Q3_tracks,92 galaxyEna,92 galaxyEnaQ0Ba-1,88 galaxyEnaQ0Ba-1-1,88 galaxyEnaQ0Ba-1-1-11,88 galaxyEnaQ0Ba-1-17,88 galaxyEnaQ0Ba-2,88 galaxyEnaQ1Ay-4,88 galaxyEnaQ1Ay-4-2,88 galaxyEnaQ1Ay-4-2-2,88 galaxyEnaQ1Ay-43,88 galaxyEnaQ1Ba-1-17,88 galaxyEnaQ2Ay-120,88 galaxyEnaQ2Ay-122,88 galaxyEnaQ2Ay-4,88 galaxyEnaQ2Ay-5,88 galaxyEnaQ2Ay-6,88 galaxyEnaQ3Ay-4,88 galaxyEnaQ3Ay-5,88 galaxyEnaQ3Ay-9,88 galaxyEnaQ3B-1-1-7,88 galaxyEnaQ3B-1-617-2,88 exceed pbmShanghai,310 pbmShanghai,354 exceeding addgene,203 exceeds abEscape,480 bloomEscMabAvg,484 bloomEscMax,490 bloomEscSerumAvg,485 bloomEscTop,488 escape,487 mccoy,480 nextstrainSamples,365 rappuoli,487 sarsCov2Phylo,369 sarsCov2PhyloPub,398 excel IgG_Z-score-_COVID-19_patients,210 IgM_Z-score-_COVID-19_patients,210 bpmIggCovidSum,219 bpmIgmCovidSum,219 pbm,219 pbmShanghai,366 except unipCov2Chain,319 unipCov2DisulfBond,315 unipCov2Domain,314 unipCov2LocCytopl,314 unipCov2LocExtra,314 unipCov2LocSignal,315 unipCov2LocTransMemb,315 unipCov2Modif,318 unipCov2Mut,315 unipCov2Other,315 unipCov2Repeat,313 unipCov2Struct,317 excess phyloGenes,536 problematicSites,186 excised kimTranscripts,99 transcriptome,91 exclude problematicSites,80 excluded PhyloCSF_smooth,240 PhyloCSFpower,255 excludes nextstrainSamples,252 excluding cas13Crispr,52 exe cpgIslandExt,578 cpgIslandExtUnmasked,581 cpgIslandSuper,578 nextstrainSamples,789 execution Q0_tracks,946 Q1_tracks,948 Q2_tracks,948 Q3_tracks,948 galaxyEna,948 galaxyEnaQ0Ba-1,944 galaxyEnaQ0Ba-1-1,944 galaxyEnaQ0Ba-1-1-11,944 galaxyEnaQ0Ba-1-17,944 galaxyEnaQ0Ba-2,944 galaxyEnaQ1Ay-4,944 galaxyEnaQ1Ay-4-2,944 galaxyEnaQ1Ay-4-2-2,944 galaxyEnaQ1Ay-43,944 galaxyEnaQ1Ba-1-17,944 galaxyEnaQ2Ay-120,944 galaxyEnaQ2Ay-122,944 galaxyEnaQ2Ay-4,944 galaxyEnaQ2Ay-5,944 galaxyEnaQ2Ay-6,944 galaxyEnaQ3Ay-4,944 galaxyEnaQ3Ay-5,944 galaxyEnaQ3Ay-9,944 galaxyEnaQ3B-1-1-7,944 galaxyEnaQ3B-1-617-2,944 exhaustively recomb,189 exhibit rapid,141 exist cpgIslandExt,179 cpgIslandExtUnmasked,182 cpgIslandSuper,179 gold,96 existing rfam,125 rosettaMhc,59 sarsCov2PhyloPub,1240 exon augustusGene,86 contacts,144 publicAnnots,92 exons Calu3_07hpi,63 ORFs,61 PhyloCSF_smooth,523 PhyloCSF_smooth,761 PhyloCSFpower,538 PhyloCSFpower,740 Vero6_05hpi,63 Vero6_24hpi,63 contacts,55 genscan,44 weizmanOrfs,69 exp cpgIslandExt,381 cpgIslandExtUnmasked,384 cpgIslandSuper,381 expand rfam,165 expanded recomb,171 expansion epitopes,177 expansions simpleRepeat,48 expectation PhyloCSF_smooth,545 PhyloCSFpower,560 expected Calu3_07hpi,275 ORFs,273 Vero6_05hpi,275 Vero6_24hpi,275 addgene,205 cpgIslandExt,285 cpgIslandExt,366 cpgIslandExtUnmasked,288 cpgIslandExtUnmasked,369 cpgIslandSuper,285 cpgIslandSuper,366 pond,138 primers,91 problematicSites,133 recomb,161 strainCons119way,312 strainCons119way,322 strainCons44way,260 strainCons44way,270 weizmanOrfs,281 expected-length strainCons119way,1973 strainCons44way,1568 experimental kimTranscripts,24 phyloGenes,39 phyloGenes,171 pyle,39 targets,55 transcriptome,16 transcriptome,153 transcriptome,217 experimentally Starr_Bloom,52 Starr_Bloom_bind,49 pyle,128 experiments icshape,25 explain problematicSites,281 explanation gc5BaseBw,66 explicitly potPathoIndel,183 exploits recomb,173 explore Q0_tracks,388 Q1_tracks,390 Q2_tracks,390 Q3_tracks,390 galaxyEna,390 galaxyEnaQ0Ba-1,386 galaxyEnaQ0Ba-1-1,386 galaxyEnaQ0Ba-1-1-11,386 galaxyEnaQ0Ba-1-17,386 galaxyEnaQ0Ba-2,386 galaxyEnaQ1Ay-4,386 galaxyEnaQ1Ay-4-2,386 galaxyEnaQ1Ay-4-2-2,386 galaxyEnaQ1Ay-43,386 galaxyEnaQ1Ba-1-17,386 galaxyEnaQ2Ay-120,386 galaxyEnaQ2Ay-122,386 galaxyEnaQ2Ay-4,386 galaxyEnaQ2Ay-5,386 galaxyEnaQ2Ay-6,386 galaxyEnaQ3Ay-4,386 galaxyEnaQ3Ay-5,386 galaxyEnaQ3Ay-9,386 galaxyEnaQ3B-1-1-7,386 galaxyEnaQ3B-1-617-2,386 explored Calu3_07hpi,312 IgG_Z-score-_COVID-19_patients,288 IgM_Z-score-_COVID-19_patients,288 ORFs,310 PhyloCSF_smooth,631 Starr_Bloom,204 Starr_Bloom_bind,198 Vero6_05hpi,312 Vero6_24hpi,312 abEscape,656 artic,71 articV4,71 articV4_1,82 bloomEscMabAvg,660 bloomEscMax,666 bloomEscSerumAvg,661 bloomEscTop,664 bpmIggCovidSum,297 bpmIgmCovidSum,297 cas13Crispr,356 contacts,284 cpgIslandExt,514 cpgIslandExtUnmasked,517 cpgIslandSuper,514 escape,663 icshape,101 kimRnaMod,118 kimTranscripts,335 mccoy,656 microdel,144 ncbiGeneBGP,46 ncbiProducts,62 nextstrainClade,197 nextstrainFreq,190 nextstrainGene,147 nextstrainParsimony,359 pbm,297 pbmShanghai,414 phyloGenes,332 poranHla1,145 poranHla2,145 primers,334 problematicSites,517 rapid,225 rappuoli,663 recomb,291 resist,90 resistPred,178 sarsCov2Phylo,722 sarsCov2PhyloPub,872 spikeMuts,300 swift,154 transcriptome,341 unipCov2AliSwissprot,267 unipCov2Chain,497 unipCov2DisulfBond,493 unipCov2Domain,492 unipCov2Interest,173 unipCov2LocCytopl,492 unipCov2LocExtra,492 unipCov2LocSignal,493 unipCov2LocTransMemb,493 unipCov2Modif,496 unipCov2Mut,493 unipCov2Other,493 unipCov2Repeat,491 unipCov2Struct,495 variantMuts,993 varskip,77 weizmanOrfs,318 exponential PhyloCSF_smooth,541 PhyloCSFpower,556 export Q0_tracks,954 Q1_tracks,956 Q2_tracks,956 Q3_tracks,956 galaxyEna,956 galaxyEnaQ0Ba-1,952 galaxyEnaQ0Ba-1-1,952 galaxyEnaQ0Ba-1-1-11,952 galaxyEnaQ0Ba-1-17,952 galaxyEnaQ0Ba-2,952 galaxyEnaQ1Ay-4,952 galaxyEnaQ1Ay-4-2,952 galaxyEnaQ1Ay-4-2-2,952 galaxyEnaQ1Ay-43,952 galaxyEnaQ1Ba-1-17,952 galaxyEnaQ2Ay-120,952 galaxyEnaQ2Ay-122,952 galaxyEnaQ2Ay-4,952 galaxyEnaQ2Ay-5,952 galaxyEnaQ2Ay-6,952 galaxyEnaQ3Ay-4,952 galaxyEnaQ3Ay-5,952 galaxyEnaQ3Ay-9,952 galaxyEnaQ3B-1-1-7,952 galaxyEnaQ3B-1-617-2,952 expr Starr_Bloom,3 expressed gordon2,41 gordon2,47 expression A_expr_avg_Expression,6 C_expr_avg_Expression,6 D_expr_avg_Expression,6 E_expr_avg_Expression,6 F_expr_avg_Expression,6 G_expr_avg_Expression,6 H_expr_avg_Expression,6 I_expr_avg_Expression,6 K_expr_avg_Expression,6 L_expr_avg_Expression,6 M_expr_avg_Expression,6 N_expr_avg_Expression,6 P_expr_avg_Expression,6 Q_expr_avg_Expression,6 R_expr_avg_Expression,6 S_expr_avg_Expression,6 Starr_Bloom,9 Starr_Bloom,30 Starr_Bloom,66 Starr_Bloom,104 Starr_Bloom,108 Starr_Bloom,135 Starr_Bloom,143 Starr_Bloom_bind,31 Starr_Bloom_bind,63 T_expr_avg_Expression,6 V_expr_avg_Expression,6 W_expr_avg_Expression,6 Y_expr_avg_Expression,6 cas13Crispr,78 contacts,273 cpgIslandExt,11 cpgIslandExt,146 cpgIslandExtUnmasked,14 cpgIslandExtUnmasked,149 cpgIslandSuper,11 cpgIslandSuper,146 kimMgiLdr3p,8 kimMgiNc3p,11 extend Q0_tracks,496 Q1_tracks,498 Q2_tracks,498 Q3_tracks,498 galaxyEna,498 galaxyEnaQ0Ba-1,494 galaxyEnaQ0Ba-1-1,494 galaxyEnaQ0Ba-1-1-11,494 galaxyEnaQ0Ba-1-17,494 galaxyEnaQ0Ba-2,494 galaxyEnaQ1Ay-4,494 galaxyEnaQ1Ay-4-2,494 galaxyEnaQ1Ay-4-2-2,494 galaxyEnaQ1Ay-43,494 galaxyEnaQ1Ba-1-17,494 galaxyEnaQ2Ay-120,494 galaxyEnaQ2Ay-122,494 galaxyEnaQ2Ay-4,494 galaxyEnaQ2Ay-5,494 galaxyEnaQ2Ay-6,494 galaxyEnaQ3Ay-4,494 galaxyEnaQ3Ay-5,494 galaxyEnaQ3Ay-9,494 galaxyEnaQ3B-1-1-7,494 galaxyEnaQ3B-1-617-2,494 extended rnaStructRangan,76 extent kimRnaMod,74 external abEscape,360 bloomEscMabAvg,364 bloomEscMax,370 bloomEscSerumAvg,365 bloomEscTop,368 escape,367 mccoy,360 rappuoli,367 extracellular unipCov2Chain,139 unipCov2Chain,147 unipCov2Chain,324 unipCov2Chain,375 unipCov2DisulfBond,135 unipCov2DisulfBond,143 unipCov2DisulfBond,320 unipCov2DisulfBond,371 unipCov2Domain,134 unipCov2Domain,142 unipCov2Domain,319 unipCov2Domain,370 unipCov2LocCytopl,134 unipCov2LocCytopl,142 unipCov2LocCytopl,319 unipCov2LocCytopl,370 unipCov2LocExtra,1 unipCov2LocExtra,3 unipCov2LocExtra,134 unipCov2LocExtra,142 unipCov2LocExtra,319 unipCov2LocExtra,370 unipCov2LocSignal,135 unipCov2LocSignal,143 unipCov2LocSignal,320 unipCov2LocSignal,371 unipCov2LocTransMemb,135 unipCov2LocTransMemb,143 unipCov2LocTransMemb,320 unipCov2LocTransMemb,371 unipCov2Modif,138 unipCov2Modif,146 unipCov2Modif,323 unipCov2Modif,374 unipCov2Mut,135 unipCov2Mut,143 unipCov2Mut,320 unipCov2Mut,371 unipCov2Other,135 unipCov2Other,143 unipCov2Other,320 unipCov2Other,371 unipCov2Repeat,133 unipCov2Repeat,141 unipCov2Repeat,318 unipCov2Repeat,369 unipCov2Struct,137 unipCov2Struct,145 unipCov2Struct,322 unipCov2Struct,373 extract addgene,159 cas13Crispr,241 nextstrainSamples,758 extracted nextstrainParsimony,336 strainCons119way,1737 strainCons44way,1332 variantMuts,850 extracting Q0_tracks,1081 Q1_tracks,1083 Q2_tracks,1083 Q3_tracks,1083 galaxyEna,1083 galaxyEnaQ0Ba-1,1079 galaxyEnaQ0Ba-1-1,1079 galaxyEnaQ0Ba-1-1-11,1079 galaxyEnaQ0Ba-1-17,1079 galaxyEnaQ0Ba-2,1079 galaxyEnaQ1Ay-4,1079 galaxyEnaQ1Ay-4-2,1079 galaxyEnaQ1Ay-4-2-2,1079 galaxyEnaQ1Ay-43,1079 galaxyEnaQ1Ba-1-17,1079 galaxyEnaQ2Ay-120,1079 galaxyEnaQ2Ay-122,1079 galaxyEnaQ2Ay-4,1079 galaxyEnaQ2Ay-5,1079 galaxyEnaQ2Ay-6,1079 galaxyEnaQ3Ay-4,1079 galaxyEnaQ3Ay-5,1079 galaxyEnaQ3Ay-9,1079 galaxyEnaQ3B-1-1-7,1079 galaxyEnaQ3B-1-617-2,1079 extraction icshape,136 nextstrainFreq,225 extracts nextstrainClade,173 nextstrainFreq,165 nextstrainGene,123 nextstrainParsimony,322 nextstrainSamples,657 extremely problematicSites,256 f F_115Max,2 F_115Total,2 F_115Total,11 F_48Max,2 F_48Total,2 F_48Total,11 Q0_tracks,1244 Q0_tracks,1324 Q1_tracks,1246 Q1_tracks,1326 Q2_tracks,1246 Q2_tracks,1326 Q3_tracks,1246 Q3_tracks,1326 galaxyEna,1246 galaxyEna,1326 galaxyEnaQ0Ba-1,1242 galaxyEnaQ0Ba-1,1322 galaxyEnaQ0Ba-1-1,1242 galaxyEnaQ0Ba-1-1,1322 galaxyEnaQ0Ba-1-1-11,1242 galaxyEnaQ0Ba-1-1-11,1322 galaxyEnaQ0Ba-1-17,1242 galaxyEnaQ0Ba-1-17,1322 galaxyEnaQ0Ba-2,1242 galaxyEnaQ0Ba-2,1322 galaxyEnaQ1Ay-4,1242 galaxyEnaQ1Ay-4,1322 galaxyEnaQ1Ay-4-2,1242 galaxyEnaQ1Ay-4-2,1322 galaxyEnaQ1Ay-4-2-2,1242 galaxyEnaQ1Ay-4-2-2,1322 galaxyEnaQ1Ay-43,1242 galaxyEnaQ1Ay-43,1322 galaxyEnaQ1Ba-1-17,1242 galaxyEnaQ1Ba-1-17,1322 galaxyEnaQ2Ay-120,1242 galaxyEnaQ2Ay-120,1322 galaxyEnaQ2Ay-122,1242 galaxyEnaQ2Ay-122,1322 galaxyEnaQ2Ay-4,1242 galaxyEnaQ2Ay-4,1322 galaxyEnaQ2Ay-5,1242 galaxyEnaQ2Ay-5,1322 galaxyEnaQ2Ay-6,1242 galaxyEnaQ2Ay-6,1322 galaxyEnaQ3Ay-4,1242 galaxyEnaQ3Ay-4,1322 galaxyEnaQ3Ay-5,1242 galaxyEnaQ3Ay-5,1322 galaxyEnaQ3Ay-9,1242 galaxyEnaQ3Ay-9,1322 galaxyEnaQ3B-1-1-7,1242 galaxyEnaQ3B-1-1-7,1322 galaxyEnaQ3B-1-617-2,1242 galaxyEnaQ3B-1-617-2,1322 multiz7way,1213 strainCons119way,2591 strainCons44way,2186 f46 strainCons44way,1061 f_115 F_115Max,10 f_48 F_48Max,10 f_bind_avg F_bind_avg,1 f_expr_avg F_expr_avg_Expression,1 fa vaccines,328 facilitate Calu3_07hpi,134 ORFs,132 Q0_tracks,420 Q1_tracks,422 Q2_tracks,422 Q3_tracks,422 Vero6_05hpi,134 Vero6_24hpi,134 contacts,271 galaxyEna,422 galaxyEnaQ0Ba-1,418 galaxyEnaQ0Ba-1-1,418 galaxyEnaQ0Ba-1-1-11,418 galaxyEnaQ0Ba-1-17,418 galaxyEnaQ0Ba-2,418 galaxyEnaQ1Ay-4,418 galaxyEnaQ1Ay-4-2,418 galaxyEnaQ1Ay-4-2-2,418 galaxyEnaQ1Ay-43,418 galaxyEnaQ1Ba-1-17,418 galaxyEnaQ2Ay-120,418 galaxyEnaQ2Ay-122,418 galaxyEnaQ2Ay-4,418 galaxyEnaQ2Ay-5,418 galaxyEnaQ2Ay-6,418 galaxyEnaQ3Ay-4,418 galaxyEnaQ3Ay-5,418 galaxyEnaQ3Ay-9,418 galaxyEnaQ3B-1-1-7,418 galaxyEnaQ3B-1-617-2,418 genscan,106 weizmanOrfs,140 facount vaccines,309 factors IgG_Z-score-_COVID-19_patients,227 IgM_Z-score-_COVID-19_patients,227 bpmIggCovidSum,236 bpmIgmCovidSum,236 pbm,236 faisal rapid,343 fall nextstrainSamples,376 sarsCov2Phylo,380 sarsCov2Phylo,447 sarsCov2PhyloPub,409 sarsCov2PhyloPub,476 spikeMuts,205 falls sarsCov2Phylo,431 sarsCov2PhyloPub,460 famiglietti unipCov2AliSwissprot,474 unipCov2Chain,703 unipCov2DisulfBond,699 unipCov2Domain,698 unipCov2Interest,357 unipCov2LocCytopl,698 unipCov2LocExtra,698 unipCov2LocSignal,699 unipCov2LocTransMemb,699 unipCov2Modif,702 unipCov2Mut,699 unipCov2Other,699 unipCov2Repeat,697 unipCov2Struct,701 families rfam,3 rfam,8 rfam,18 rfam,27 rfam,69 rfam,82 rfam,179 faq Calu3_07hpi,341 IgG_Z-score-_COVID-19_patients,397 IgM_Z-score-_COVID-19_patients,397 ORFs,339 PhyloCSF_smooth,666 Starr_Bloom,233 Starr_Bloom_bind,227 Vero6_05hpi,341 Vero6_24hpi,341 abEscape,685 artic,179 articV4,179 articV4_1,192 augustusGene,45 bloomEscMabAvg,689 bloomEscMax,695 bloomEscSerumAvg,690 bloomEscTop,693 bpmIggCovidSum,406 bpmIgmCovidSum,406 cas13Crispr,464 contacts,392 escape,692 genscan,60 icshape,176 kimRnaMod,226 kimTranscripts,444 mccoy,685 microdel,183 ncbiGeneBGP,159 ncbiProducts,175 nextstrainFreq,264 pbm,406 pbmShanghai,489 phyloGenes,441 poranHla1,254 poranHla2,254 rapid,333 rappuoli,692 resist,136 resistPred,228 spikeMuts,351 swift,262 transcriptome,450 unipCov2AliSwissprot,396 unipCov2Chain,626 unipCov2DisulfBond,622 unipCov2Domain,621 unipCov2LocCytopl,621 unipCov2LocExtra,621 unipCov2LocSignal,622 unipCov2LocTransMemb,622 unipCov2Modif,625 unipCov2Mut,622 unipCov2Other,622 unipCov2Repeat,620 unipCov2Struct,624 varskip,185 weizmanOrfs,347 fast nextstrainSamples,1064 sarsCov2Phylo,1151 sarsCov2PhyloPub,1284 fast-evolving strainCons119way,346 strainCons44way,294 fasta Q0_tracks,934 Q1_tracks,936 Q2_tracks,936 Q3_tracks,936 galaxyEna,936 galaxyEnaQ0Ba-1,932 galaxyEnaQ0Ba-1-1,932 galaxyEnaQ0Ba-1-1-11,932 galaxyEnaQ0Ba-1-17,932 galaxyEnaQ0Ba-2,932 galaxyEnaQ1Ay-4,932 galaxyEnaQ1Ay-4-2,932 galaxyEnaQ1Ay-4-2-2,932 galaxyEnaQ1Ay-43,932 galaxyEnaQ1Ba-1-17,932 galaxyEnaQ2Ay-120,932 galaxyEnaQ2Ay-122,932 galaxyEnaQ2Ay-4,932 galaxyEnaQ2Ay-5,932 galaxyEnaQ2Ay-6,932 galaxyEnaQ3Ay-4,932 galaxyEnaQ3Ay-5,932 galaxyEnaQ3Ay-9,932 galaxyEnaQ3B-1-1-7,932 galaxyEnaQ3B-1-617-2,932 nextstrainSamples,763 nextstrainSamples,850 primers,48 primers,370 vaccines,212 vaccines,357 variantMuts,1016 faster pond,130 strainCons119way,309 strainCons44way,257 fasttree sarsCov2Phylo,643 sarsCov2Phylo,1127 sarsCov2PhyloPub,667 sarsCov2PhyloPub,1260 fatality potPathoIndel,76 potPathoIndel,125 potPathoIndel,133 potPathoIndel,200 fatovcf nextstrainSamples,755 nextstrainSamples,775 nextstrainSamples,811 nextstrainSamples,815 nextstrainSamples,834 nextstrainSamples,845 nextstrainSamples,866 variantMuts,858 faure potPathoIndel,211 feature Q0_tracks,417 Q0_tracks,491 Q0_tracks,512 Q0_tracks,528 Q0_tracks,547 Q1_tracks,419 Q1_tracks,493 Q1_tracks,514 Q1_tracks,530 Q1_tracks,549 Q2_tracks,419 Q2_tracks,493 Q2_tracks,514 Q2_tracks,530 Q2_tracks,549 Q3_tracks,419 Q3_tracks,493 Q3_tracks,514 Q3_tracks,530 Q3_tracks,549 abEscape,474 abEscape,519 abEscape,523 abEscape,554 abEscape,558 addgene,124 addgene,134 bloomEscMabAvg,478 bloomEscMabAvg,523 bloomEscMabAvg,527 bloomEscMabAvg,558 bloomEscMabAvg,562 bloomEscMax,484 bloomEscMax,529 bloomEscMax,533 bloomEscMax,564 bloomEscMax,568 bloomEscSerumAvg,479 bloomEscSerumAvg,524 bloomEscSerumAvg,528 bloomEscSerumAvg,559 bloomEscSerumAvg,563 bloomEscTop,482 bloomEscTop,527 bloomEscTop,531 bloomEscTop,562 bloomEscTop,566 contacts,92 escape,481 escape,526 escape,530 escape,561 escape,565 galaxyEna,419 galaxyEna,493 galaxyEna,514 galaxyEna,530 galaxyEna,549 galaxyEnaQ0Ba-1,415 galaxyEnaQ0Ba-1,489 galaxyEnaQ0Ba-1,510 galaxyEnaQ0Ba-1,526 galaxyEnaQ0Ba-1,545 galaxyEnaQ0Ba-1-1,415 galaxyEnaQ0Ba-1-1,489 galaxyEnaQ0Ba-1-1,510 galaxyEnaQ0Ba-1-1,526 galaxyEnaQ0Ba-1-1,545 galaxyEnaQ0Ba-1-1-11,415 galaxyEnaQ0Ba-1-1-11,489 galaxyEnaQ0Ba-1-1-11,510 galaxyEnaQ0Ba-1-1-11,526 galaxyEnaQ0Ba-1-1-11,545 galaxyEnaQ0Ba-1-17,415 galaxyEnaQ0Ba-1-17,489 galaxyEnaQ0Ba-1-17,510 galaxyEnaQ0Ba-1-17,526 galaxyEnaQ0Ba-1-17,545 galaxyEnaQ0Ba-2,415 galaxyEnaQ0Ba-2,489 galaxyEnaQ0Ba-2,510 galaxyEnaQ0Ba-2,526 galaxyEnaQ0Ba-2,545 galaxyEnaQ1Ay-4,415 galaxyEnaQ1Ay-4,489 galaxyEnaQ1Ay-4,510 galaxyEnaQ1Ay-4,526 galaxyEnaQ1Ay-4,545 galaxyEnaQ1Ay-4-2,415 galaxyEnaQ1Ay-4-2,489 galaxyEnaQ1Ay-4-2,510 galaxyEnaQ1Ay-4-2,526 galaxyEnaQ1Ay-4-2,545 galaxyEnaQ1Ay-4-2-2,415 galaxyEnaQ1Ay-4-2-2,489 galaxyEnaQ1Ay-4-2-2,510 galaxyEnaQ1Ay-4-2-2,526 galaxyEnaQ1Ay-4-2-2,545 galaxyEnaQ1Ay-43,415 galaxyEnaQ1Ay-43,489 galaxyEnaQ1Ay-43,510 galaxyEnaQ1Ay-43,526 galaxyEnaQ1Ay-43,545 galaxyEnaQ1Ba-1-17,415 galaxyEnaQ1Ba-1-17,489 galaxyEnaQ1Ba-1-17,510 galaxyEnaQ1Ba-1-17,526 galaxyEnaQ1Ba-1-17,545 galaxyEnaQ2Ay-120,415 galaxyEnaQ2Ay-120,489 galaxyEnaQ2Ay-120,510 galaxyEnaQ2Ay-120,526 galaxyEnaQ2Ay-120,545 galaxyEnaQ2Ay-122,415 galaxyEnaQ2Ay-122,489 galaxyEnaQ2Ay-122,510 galaxyEnaQ2Ay-122,526 galaxyEnaQ2Ay-122,545 galaxyEnaQ2Ay-4,415 galaxyEnaQ2Ay-4,489 galaxyEnaQ2Ay-4,510 galaxyEnaQ2Ay-4,526 galaxyEnaQ2Ay-4,545 galaxyEnaQ2Ay-5,415 galaxyEnaQ2Ay-5,489 galaxyEnaQ2Ay-5,510 galaxyEnaQ2Ay-5,526 galaxyEnaQ2Ay-5,545 galaxyEnaQ2Ay-6,415 galaxyEnaQ2Ay-6,489 galaxyEnaQ2Ay-6,510 galaxyEnaQ2Ay-6,526 galaxyEnaQ2Ay-6,545 galaxyEnaQ3Ay-4,415 galaxyEnaQ3Ay-4,489 galaxyEnaQ3Ay-4,510 galaxyEnaQ3Ay-4,526 galaxyEnaQ3Ay-4,545 galaxyEnaQ3Ay-5,415 galaxyEnaQ3Ay-5,489 galaxyEnaQ3Ay-5,510 galaxyEnaQ3Ay-5,526 galaxyEnaQ3Ay-5,545 galaxyEnaQ3Ay-9,415 galaxyEnaQ3Ay-9,489 galaxyEnaQ3Ay-9,510 galaxyEnaQ3Ay-9,526 galaxyEnaQ3Ay-9,545 galaxyEnaQ3B-1-1-7,415 galaxyEnaQ3B-1-1-7,489 galaxyEnaQ3B-1-1-7,510 galaxyEnaQ3B-1-1-7,526 galaxyEnaQ3B-1-1-7,545 galaxyEnaQ3B-1-617-2,415 galaxyEnaQ3B-1-617-2,489 galaxyEnaQ3B-1-617-2,510 galaxyEnaQ3B-1-617-2,526 galaxyEnaQ3B-1-617-2,545 genscan,129 mccoy,474 mccoy,519 mccoy,523 mccoy,554 mccoy,558 pdb,81 poranHla1,114 poranHla2,114 rappuoli,481 rappuoli,526 rappuoli,530 rappuoli,561 rappuoli,565 treangen,130 unipCov2AliSwissprot,128 unipCov2Chain,53 unipCov2Chain,334 unipCov2DisulfBond,49 unipCov2DisulfBond,330 unipCov2Domain,48 unipCov2Domain,329 unipCov2Interest,71 unipCov2LocCytopl,48 unipCov2LocCytopl,329 unipCov2LocExtra,48 unipCov2LocExtra,329 unipCov2LocSignal,49 unipCov2LocSignal,330 unipCov2LocTransMemb,49 unipCov2LocTransMemb,330 unipCov2Modif,52 unipCov2Modif,333 unipCov2Mut,49 unipCov2Mut,330 unipCov2Other,49 unipCov2Other,330 unipCov2Repeat,47 unipCov2Repeat,328 unipCov2Struct,51 unipCov2Struct,332 variantMuts,802 features Calu3_07hpi,221 IgG_Z-score-_COVID-19_patients,358 IgM_Z-score-_COVID-19_patients,358 ORFs,219 Q0_tracks,427 Q0_tracks,475 Q0_tracks,672 Q1_tracks,429 Q1_tracks,477 Q1_tracks,674 Q2_tracks,429 Q2_tracks,477 Q2_tracks,674 Q3_tracks,429 Q3_tracks,477 Q3_tracks,674 Vero6_05hpi,221 Vero6_24hpi,221 abEscape,483 abEscape,502 abEscape,543 artic,141 articV4,141 articV4_1,154 bloomEscMabAvg,487 bloomEscMabAvg,506 bloomEscMabAvg,547 bloomEscMax,493 bloomEscMax,512 bloomEscMax,553 bloomEscSerumAvg,488 bloomEscSerumAvg,507 bloomEscSerumAvg,548 bloomEscTop,491 bloomEscTop,510 bloomEscTop,551 bpmIggCovidSum,367 bpmIgmCovidSum,367 cas13Crispr,112 cas13Crispr,426 contacts,354 escape,490 escape,509 escape,550 galaxyEna,429 galaxyEna,477 galaxyEna,674 galaxyEnaQ0Ba-1,425 galaxyEnaQ0Ba-1,473 galaxyEnaQ0Ba-1,670 galaxyEnaQ0Ba-1-1,425 galaxyEnaQ0Ba-1-1,473 galaxyEnaQ0Ba-1-1,670 galaxyEnaQ0Ba-1-1-11,425 galaxyEnaQ0Ba-1-1-11,473 galaxyEnaQ0Ba-1-1-11,670 galaxyEnaQ0Ba-1-17,425 galaxyEnaQ0Ba-1-17,473 galaxyEnaQ0Ba-1-17,670 galaxyEnaQ0Ba-2,425 galaxyEnaQ0Ba-2,473 galaxyEnaQ0Ba-2,670 galaxyEnaQ1Ay-4,425 galaxyEnaQ1Ay-4,473 galaxyEnaQ1Ay-4,670 galaxyEnaQ1Ay-4-2,425 galaxyEnaQ1Ay-4-2,473 galaxyEnaQ1Ay-4-2,670 galaxyEnaQ1Ay-4-2-2,425 galaxyEnaQ1Ay-4-2-2,473 galaxyEnaQ1Ay-4-2-2,670 galaxyEnaQ1Ay-43,425 galaxyEnaQ1Ay-43,473 galaxyEnaQ1Ay-43,670 galaxyEnaQ1Ba-1-17,425 galaxyEnaQ1Ba-1-17,473 galaxyEnaQ1Ba-1-17,670 galaxyEnaQ2Ay-120,425 galaxyEnaQ2Ay-120,473 galaxyEnaQ2Ay-120,670 galaxyEnaQ2Ay-122,425 galaxyEnaQ2Ay-122,473 galaxyEnaQ2Ay-122,670 galaxyEnaQ2Ay-4,425 galaxyEnaQ2Ay-4,473 galaxyEnaQ2Ay-4,670 galaxyEnaQ2Ay-5,425 galaxyEnaQ2Ay-5,473 galaxyEnaQ2Ay-5,670 galaxyEnaQ2Ay-6,425 galaxyEnaQ2Ay-6,473 galaxyEnaQ2Ay-6,670 galaxyEnaQ3Ay-4,425 galaxyEnaQ3Ay-4,473 galaxyEnaQ3Ay-4,670 galaxyEnaQ3Ay-5,425 galaxyEnaQ3Ay-5,473 galaxyEnaQ3Ay-5,670 galaxyEnaQ3Ay-9,425 galaxyEnaQ3Ay-9,473 galaxyEnaQ3Ay-9,670 galaxyEnaQ3B-1-1-7,425 galaxyEnaQ3B-1-1-7,473 galaxyEnaQ3B-1-1-7,670 galaxyEnaQ3B-1-617-2,425 galaxyEnaQ3B-1-617-2,473 galaxyEnaQ3B-1-617-2,670 kimRnaMod,188 kimTranscripts,405 mccoy,483 mccoy,502 mccoy,543 ncbiGeneBGP,126 ncbiProducts,142 pbm,367 phyloGenes,402 poranHla1,215 poranHla2,215 potPathoIndel,23 potPathoIndel,50 rapid,295 rappuoli,490 rappuoli,509 rappuoli,550 swift,224 transcriptome,411 unipCov2AliSwissprot,356 unipCov2Chain,586 unipCov2DisulfBond,582 unipCov2Domain,581 unipCov2Interest,262 unipCov2LocCytopl,581 unipCov2LocExtra,581 unipCov2LocSignal,582 unipCov2LocTransMemb,582 unipCov2Modif,585 unipCov2Mut,582 unipCov2Other,582 unipCov2Repeat,580 unipCov2Struct,584 varskip,147 weizmanOrfs,227 feb multiz7way,1116 resistPred,18 spikeMuts,9 strainCons119way,2494 strainCons44way,2089 variantAaMutsV2_B_1_1_7,16 variantAaMutsV2_B_1_351,16 variantAaMutsV2_B_1_429,16 variantAaMutsV2_P_1,16 variantMuts,431 variantMuts,556 variantNucMutsV2_B_1_1_7,15 variantNucMutsV2_B_1_351,15 variantNucMutsV2_B_1_429,15 variantNucMutsV2_P_1,15 february pond,44 spikeMuts,58 feedback publicAnnots,85 unipCov2AliSwissprot,420 unipCov2Chain,650 unipCov2DisulfBond,646 unipCov2Domain,645 unipCov2Interest,303 unipCov2LocCytopl,645 unipCov2LocExtra,645 unipCov2LocSignal,646 unipCov2LocTransMemb,646 unipCov2Modif,649 unipCov2Mut,646 unipCov2Other,646 unipCov2Repeat,644 unipCov2Struct,648 fei IgG_Z-score-_COVID-19_patients,414 IgM_Z-score-_COVID-19_patients,414 bpmIggCovidSum,423 bpmIgmCovidSum,423 pbm,423 felsenstein multiz7way,982 strainCons119way,1827 strainCons119way,2360 strainCons44way,1422 strainCons44way,1955 feng pdb,137 potPathoIndel,215 fernandes addgene,244 kimTranscripts,452 primers,381 problematicSites,595 sarsCov2Phylo,1106 transcriptome,458 few nextstrainSamples,569 problematicSites,343 problematicSites,439 rapid,178 swift,115 fewer strainCons119way,659 strainCons44way,607 ffer windowmaskerSdust,96 field addgene,225 augustusGene,120 rosettaMhc,219 strainCons119way,2126 strainCons119way,2166 strainCons44way,1721 strainCons44way,1761 treangen,135 fields addgene,162 pond,213 pond,220 fifty-five pbmShanghai,43 fig targets,227 fight rosettaMhc,25 figure gordon2,234 sarsCov2Phylo,146 sarsCov2PhyloPub,152 transcriptome,273 transcriptome,328 figures IgG_Z-score-_COVID-19_patients,177 IgM_Z-score-_COVID-19_patients,177 bpmIggCovidSum,186 bpmIgmCovidSum,186 pbm,186 file IgG_Z-score-_COVID-19_patients,315 IgG_Z-score-_COVID-19_patients,366 IgM_Z-score-_COVID-19_patients,315 IgM_Z-score-_COVID-19_patients,366 abEscape,577 abEscape,608 artic,55 artic,59 artic,98 artic,149 articV4,58 articV4,98 articV4,149 articV4_1,69 articV4_1,111 articV4_1,162 bloomEscMabAvg,581 bloomEscMabAvg,612 bloomEscMax,587 bloomEscMax,618 bloomEscSerumAvg,582 bloomEscSerumAvg,613 bloomEscTop,585 bloomEscTop,616 bpmIggCovidSum,324 bpmIggCovidSum,375 bpmIgmCovidSum,324 bpmIgmCovidSum,375 cas13Crispr,383 cas13Crispr,434 contacts,311 contacts,362 cpgIslandExt,583 cpgIslandExtUnmasked,586 cpgIslandSuper,583 escape,584 escape,615 gap,50 gap,66 gold,49 gold,65 gordon2,108 icshape,87 kimRnaMod,145 kimRnaMod,196 kimTranscripts,362 kimTranscripts,413 mccoy,577 mccoy,608 ncbiGeneBGP,67 ncbiProducts,83 nextstrainClade,146 nextstrainClade,168 nextstrainClade,184 nextstrainFreq,160 nextstrainFreq,176 nextstrainFreq,312 nextstrainGene,118 nextstrainGene,134 nextstrainParsimony,317 nextstrainParsimony,346 nextstrainSamples,772 nextstrainSamples,802 pbm,324 pbm,375 pbmShanghai,441 phyloGenes,359 phyloGenes,410 poranHla1,172 poranHla1,223 poranHla2,172 poranHla2,223 primers,49 primers,321 problematicSites,487 rapid,252 rapid,303 rappuoli,584 rappuoli,615 recomb,278 resist,111 resistPred,203 strainCons119way,429 strainCons44way,377 swift,181 swift,232 transcriptome,368 transcriptome,419 unipCov2AliSwissprot,190 unipCov2AliSwissprot,288 unipCov2AliSwissprot,307 unipCov2Chain,443 unipCov2Chain,518 unipCov2Chain,537 unipCov2DisulfBond,439 unipCov2DisulfBond,514 unipCov2DisulfBond,533 unipCov2Domain,438 unipCov2Domain,513 unipCov2Domain,532 unipCov2Interest,119 unipCov2Interest,194 unipCov2Interest,213 unipCov2LocCytopl,438 unipCov2LocCytopl,513 unipCov2LocCytopl,532 unipCov2LocExtra,438 unipCov2LocExtra,513 unipCov2LocExtra,532 unipCov2LocSignal,439 unipCov2LocSignal,514 unipCov2LocSignal,533 unipCov2LocTransMemb,439 unipCov2LocTransMemb,514 unipCov2LocTransMemb,533 unipCov2Modif,442 unipCov2Modif,517 unipCov2Modif,536 unipCov2Mut,439 unipCov2Mut,514 unipCov2Mut,533 unipCov2Other,439 unipCov2Other,514 unipCov2Other,533 unipCov2Repeat,437 unipCov2Repeat,512 unipCov2Repeat,531 unipCov2Struct,441 unipCov2Struct,516 unipCov2Struct,535 vaccines,111 vaccines,227 vaccines,358 vaccines,363 vaccines,380 varskip,104 varskip,155 windowmaskerSdust,77 filenames nextstrainSamples,865 unipCov2AliSwissprot,299 unipCov2Chain,529 unipCov2DisulfBond,525 unipCov2Domain,524 unipCov2Interest,205 unipCov2LocCytopl,524 unipCov2LocExtra,524 unipCov2LocSignal,525 unipCov2LocTransMemb,525 unipCov2Modif,528 unipCov2Mut,525 unipCov2Other,525 unipCov2Repeat,523 unipCov2Struct,527 files IgG_Z-score-_COVID-19_patients,206 IgG_Z-score-_COVID-19_patients,280 IgM_Z-score-_COVID-19_patients,206 IgM_Z-score-_COVID-19_patients,280 Q0_tracks,876 Q0_tracks,958 Q0_tracks,1101 Q0_tracks,1104 Q1_tracks,878 Q1_tracks,960 Q1_tracks,1103 Q1_tracks,1106 Q2_tracks,878 Q2_tracks,960 Q2_tracks,1103 Q2_tracks,1106 Q3_tracks,878 Q3_tracks,960 Q3_tracks,1103 Q3_tracks,1106 addgene,150 bpmIggCovidSum,215 bpmIggCovidSum,289 bpmIgmCovidSum,215 bpmIgmCovidSum,289 galaxyEna,878 galaxyEna,960 galaxyEna,1103 galaxyEna,1106 galaxyEnaQ0Ba-1,874 galaxyEnaQ0Ba-1,956 galaxyEnaQ0Ba-1,1099 galaxyEnaQ0Ba-1,1102 galaxyEnaQ0Ba-1-1,874 galaxyEnaQ0Ba-1-1,956 galaxyEnaQ0Ba-1-1,1099 galaxyEnaQ0Ba-1-1,1102 galaxyEnaQ0Ba-1-1-11,874 galaxyEnaQ0Ba-1-1-11,956 galaxyEnaQ0Ba-1-1-11,1099 galaxyEnaQ0Ba-1-1-11,1102 galaxyEnaQ0Ba-1-17,874 galaxyEnaQ0Ba-1-17,956 galaxyEnaQ0Ba-1-17,1099 galaxyEnaQ0Ba-1-17,1102 galaxyEnaQ0Ba-2,874 galaxyEnaQ0Ba-2,956 galaxyEnaQ0Ba-2,1099 galaxyEnaQ0Ba-2,1102 galaxyEnaQ1Ay-4,874 galaxyEnaQ1Ay-4,956 galaxyEnaQ1Ay-4,1099 galaxyEnaQ1Ay-4,1102 galaxyEnaQ1Ay-4-2,874 galaxyEnaQ1Ay-4-2,956 galaxyEnaQ1Ay-4-2,1099 galaxyEnaQ1Ay-4-2,1102 galaxyEnaQ1Ay-4-2-2,874 galaxyEnaQ1Ay-4-2-2,956 galaxyEnaQ1Ay-4-2-2,1099 galaxyEnaQ1Ay-4-2-2,1102 galaxyEnaQ1Ay-43,874 galaxyEnaQ1Ay-43,956 galaxyEnaQ1Ay-43,1099 galaxyEnaQ1Ay-43,1102 galaxyEnaQ1Ba-1-17,874 galaxyEnaQ1Ba-1-17,956 galaxyEnaQ1Ba-1-17,1099 galaxyEnaQ1Ba-1-17,1102 galaxyEnaQ2Ay-120,874 galaxyEnaQ2Ay-120,956 galaxyEnaQ2Ay-120,1099 galaxyEnaQ2Ay-120,1102 galaxyEnaQ2Ay-122,874 galaxyEnaQ2Ay-122,956 galaxyEnaQ2Ay-122,1099 galaxyEnaQ2Ay-122,1102 galaxyEnaQ2Ay-4,874 galaxyEnaQ2Ay-4,956 galaxyEnaQ2Ay-4,1099 galaxyEnaQ2Ay-4,1102 galaxyEnaQ2Ay-5,874 galaxyEnaQ2Ay-5,956 galaxyEnaQ2Ay-5,1099 galaxyEnaQ2Ay-5,1102 galaxyEnaQ2Ay-6,874 galaxyEnaQ2Ay-6,956 galaxyEnaQ2Ay-6,1099 galaxyEnaQ2Ay-6,1102 galaxyEnaQ3Ay-4,874 galaxyEnaQ3Ay-4,956 galaxyEnaQ3Ay-4,1099 galaxyEnaQ3Ay-4,1102 galaxyEnaQ3Ay-5,874 galaxyEnaQ3Ay-5,956 galaxyEnaQ3Ay-5,1099 galaxyEnaQ3Ay-5,1102 galaxyEnaQ3Ay-9,874 galaxyEnaQ3Ay-9,956 galaxyEnaQ3Ay-9,1099 galaxyEnaQ3Ay-9,1102 galaxyEnaQ3B-1-1-7,874 galaxyEnaQ3B-1-1-7,956 galaxyEnaQ3B-1-1-7,1099 galaxyEnaQ3B-1-1-7,1102 galaxyEnaQ3B-1-617-2,874 galaxyEnaQ3B-1-617-2,956 galaxyEnaQ3B-1-617-2,1099 galaxyEnaQ3B-1-617-2,1102 kimIvtCov,167 nextstrainParsimony,385 nextstrainSamples,712 pbm,215 pbm,289 pbmShanghai,358 pbmShanghai,406 problematicSites,503 pyle,256 pyle,268 rapid,215 sarsCov2Phylo,708 sarsCov2Phylo,736 sarsCov2PhyloPub,810 sarsCov2PhyloPub,829 spikeMuts,323 treangen,196 treangen,279 treangen,289 variantMuts,980 filled multiz7way,685 strainCons119way,1034 strainCons44way,982 filter Q0_tracks,706 Q0_tracks,757 Q0_tracks,797 Q1_tracks,708 Q1_tracks,759 Q1_tracks,799 Q2_tracks,708 Q2_tracks,759 Q2_tracks,799 Q3_tracks,708 Q3_tracks,759 Q3_tracks,799 galaxyEna,708 galaxyEna,759 galaxyEna,799 galaxyEnaQ0Ba-1,704 galaxyEnaQ0Ba-1,755 galaxyEnaQ0Ba-1,795 galaxyEnaQ0Ba-1-1,704 galaxyEnaQ0Ba-1-1,755 galaxyEnaQ0Ba-1-1,795 galaxyEnaQ0Ba-1-1-11,704 galaxyEnaQ0Ba-1-1-11,755 galaxyEnaQ0Ba-1-1-11,795 galaxyEnaQ0Ba-1-17,704 galaxyEnaQ0Ba-1-17,755 galaxyEnaQ0Ba-1-17,795 galaxyEnaQ0Ba-2,704 galaxyEnaQ0Ba-2,755 galaxyEnaQ0Ba-2,795 galaxyEnaQ1Ay-4,704 galaxyEnaQ1Ay-4,755 galaxyEnaQ1Ay-4,795 galaxyEnaQ1Ay-4-2,704 galaxyEnaQ1Ay-4-2,755 galaxyEnaQ1Ay-4-2,795 galaxyEnaQ1Ay-4-2-2,704 galaxyEnaQ1Ay-4-2-2,755 galaxyEnaQ1Ay-4-2-2,795 galaxyEnaQ1Ay-43,704 galaxyEnaQ1Ay-43,755 galaxyEnaQ1Ay-43,795 galaxyEnaQ1Ba-1-17,704 galaxyEnaQ1Ba-1-17,755 galaxyEnaQ1Ba-1-17,795 galaxyEnaQ2Ay-120,704 galaxyEnaQ2Ay-120,755 galaxyEnaQ2Ay-120,795 galaxyEnaQ2Ay-122,704 galaxyEnaQ2Ay-122,755 galaxyEnaQ2Ay-122,795 galaxyEnaQ2Ay-4,704 galaxyEnaQ2Ay-4,755 galaxyEnaQ2Ay-4,795 galaxyEnaQ2Ay-5,704 galaxyEnaQ2Ay-5,755 galaxyEnaQ2Ay-5,795 galaxyEnaQ2Ay-6,704 galaxyEnaQ2Ay-6,755 galaxyEnaQ2Ay-6,795 galaxyEnaQ3Ay-4,704 galaxyEnaQ3Ay-4,755 galaxyEnaQ3Ay-4,795 galaxyEnaQ3Ay-5,704 galaxyEnaQ3Ay-5,755 galaxyEnaQ3Ay-5,795 galaxyEnaQ3Ay-9,704 galaxyEnaQ3Ay-9,755 galaxyEnaQ3Ay-9,795 galaxyEnaQ3B-1-1-7,704 galaxyEnaQ3B-1-1-7,755 galaxyEnaQ3B-1-1-7,795 galaxyEnaQ3B-1-617-2,704 galaxyEnaQ3B-1-617-2,755 galaxyEnaQ3B-1-617-2,795 genscan,82 vaccines,252 filtered Q0_tracks,679 Q0_tracks,781 Q1_tracks,681 Q1_tracks,783 Q2_tracks,681 Q2_tracks,783 Q3_tracks,681 Q3_tracks,783 Starr_Bloom,195 Starr_Bloom_bind,189 galaxyEna,681 galaxyEna,783 galaxyEnaQ0Ba-1,677 galaxyEnaQ0Ba-1,779 galaxyEnaQ0Ba-1-1,677 galaxyEnaQ0Ba-1-1,779 galaxyEnaQ0Ba-1-1-11,677 galaxyEnaQ0Ba-1-1-11,779 galaxyEnaQ0Ba-1-17,677 galaxyEnaQ0Ba-1-17,779 galaxyEnaQ0Ba-2,677 galaxyEnaQ0Ba-2,779 galaxyEnaQ1Ay-4,677 galaxyEnaQ1Ay-4,779 galaxyEnaQ1Ay-4-2,677 galaxyEnaQ1Ay-4-2,779 galaxyEnaQ1Ay-4-2-2,677 galaxyEnaQ1Ay-4-2-2,779 galaxyEnaQ1Ay-43,677 galaxyEnaQ1Ay-43,779 galaxyEnaQ1Ba-1-17,677 galaxyEnaQ1Ba-1-17,779 galaxyEnaQ2Ay-120,677 galaxyEnaQ2Ay-120,779 galaxyEnaQ2Ay-122,677 galaxyEnaQ2Ay-122,779 galaxyEnaQ2Ay-4,677 galaxyEnaQ2Ay-4,779 galaxyEnaQ2Ay-5,677 galaxyEnaQ2Ay-5,779 galaxyEnaQ2Ay-6,677 galaxyEnaQ2Ay-6,779 galaxyEnaQ3Ay-4,677 galaxyEnaQ3Ay-4,779 galaxyEnaQ3Ay-5,677 galaxyEnaQ3Ay-5,779 galaxyEnaQ3Ay-9,677 galaxyEnaQ3Ay-9,779 galaxyEnaQ3B-1-1-7,677 galaxyEnaQ3B-1-1-7,779 galaxyEnaQ3B-1-617-2,677 galaxyEnaQ3B-1-617-2,779 microdel,84 rosettaMhc,262 sarsCov2Phylo,782 strainCons119way,1753 strainCons44way,1348 unipCov2AliSwissprot,163 unipCov2AliSwissprot,180 unipCov2AliSwissprot,225 unipCov2Chain,416 unipCov2Chain,433 unipCov2DisulfBond,412 unipCov2DisulfBond,429 unipCov2Domain,411 unipCov2Domain,428 unipCov2Interest,92 unipCov2Interest,109 unipCov2LocCytopl,411 unipCov2LocCytopl,428 unipCov2LocExtra,411 unipCov2LocExtra,428 unipCov2LocSignal,412 unipCov2LocSignal,429 unipCov2LocTransMemb,412 unipCov2LocTransMemb,429 unipCov2Modif,415 unipCov2Modif,432 unipCov2Mut,412 unipCov2Mut,429 unipCov2Other,412 unipCov2Other,429 unipCov2Repeat,410 unipCov2Repeat,427 unipCov2Struct,414 unipCov2Struct,431 vaccines,244 filtering Q0_tracks,669 Q1_tracks,671 Q2_tracks,671 Q3_tracks,671 galaxyEna,671 galaxyEnaQ0Ba-1,667 galaxyEnaQ0Ba-1-1,667 galaxyEnaQ0Ba-1-1-11,667 galaxyEnaQ0Ba-1-17,667 galaxyEnaQ0Ba-2,667 galaxyEnaQ1Ay-4,667 galaxyEnaQ1Ay-4-2,667 galaxyEnaQ1Ay-4-2-2,667 galaxyEnaQ1Ay-43,667 galaxyEnaQ1Ba-1-17,667 galaxyEnaQ2Ay-120,667 galaxyEnaQ2Ay-122,667 galaxyEnaQ2Ay-4,667 galaxyEnaQ2Ay-5,667 galaxyEnaQ2Ay-6,667 galaxyEnaQ3Ay-4,667 galaxyEnaQ3Ay-5,667 galaxyEnaQ3Ay-9,667 galaxyEnaQ3B-1-1-7,667 galaxyEnaQ3B-1-617-2,667 pyle,258 final cpgIslandExt,89 cpgIslandExtUnmasked,92 cpgIslandSuper,89 finally abEscape,468 addgene,228 bloomEscMabAvg,472 bloomEscMax,478 bloomEscSerumAvg,473 bloomEscTop,476 escape,475 mccoy,468 rappuoli,475 treangen,158 find cd8escape,22 contacts,147 potPathoIndel,159 rfam,174 finder simpleRepeat,25 simpleRepeat,78 finding augustusGene,306 phyloGenes,533 resistPred,248 findmotif transcriptome,253 finds multiz7way,650 strainCons119way,999 strainCons44way,947 fine primers,302 finger unipCov2Chain,186 unipCov2DisulfBond,182 unipCov2Domain,181 unipCov2LocCytopl,181 unipCov2LocExtra,181 unipCov2LocSignal,182 unipCov2LocTransMemb,182 unipCov2Modif,185 unipCov2Mut,182 unipCov2Other,182 unipCov2Repeat,180 unipCov2Struct,184 finished Q0_tracks,1000 Q1_tracks,1002 Q2_tracks,1002 Q3_tracks,1002 galaxyEna,1002 galaxyEnaQ0Ba-1,998 galaxyEnaQ0Ba-1-1,998 galaxyEnaQ0Ba-1-1-11,998 galaxyEnaQ0Ba-1-17,998 galaxyEnaQ0Ba-2,998 galaxyEnaQ1Ay-4,998 galaxyEnaQ1Ay-4-2,998 galaxyEnaQ1Ay-4-2-2,998 galaxyEnaQ1Ay-43,998 galaxyEnaQ1Ba-1-17,998 galaxyEnaQ2Ay-120,998 galaxyEnaQ2Ay-122,998 galaxyEnaQ2Ay-4,998 galaxyEnaQ2Ay-5,998 galaxyEnaQ2Ay-6,998 galaxyEnaQ3Ay-4,998 galaxyEnaQ3Ay-5,998 galaxyEnaQ3Ay-9,998 galaxyEnaQ3B-1-1-7,998 galaxyEnaQ3B-1-617-2,998 finkel Calu3_07hpi,79 Calu3_07hpi,346 ORFs,77 ORFs,344 Vero6_05hpi,79 Vero6_05hpi,346 Vero6_24hpi,79 Vero6_24hpi,346 phyloGenes,555 weizmanOrfs,85 weizmanOrfs,352 finland strainCons119way,1188 fire vaccines,50 vaccines,66 vaccines,207 vaccines,501 vaccines,619 first Q0_tracks,621 Q1_tracks,623 Q2_tracks,623 Q3_tracks,623 cas13Crispr,223 galaxyEna,623 galaxyEnaQ0Ba-1,619 galaxyEnaQ0Ba-1-1,619 galaxyEnaQ0Ba-1-1-11,619 galaxyEnaQ0Ba-1-17,619 galaxyEnaQ0Ba-2,619 galaxyEnaQ1Ay-4,619 galaxyEnaQ1Ay-4-2,619 galaxyEnaQ1Ay-4-2-2,619 galaxyEnaQ1Ay-43,619 galaxyEnaQ1Ba-1-17,619 galaxyEnaQ2Ay-120,619 galaxyEnaQ2Ay-122,619 galaxyEnaQ2Ay-4,619 galaxyEnaQ2Ay-5,619 galaxyEnaQ2Ay-6,619 galaxyEnaQ3Ay-4,619 galaxyEnaQ3Ay-5,619 galaxyEnaQ3Ay-9,619 galaxyEnaQ3B-1-1-7,619 galaxyEnaQ3B-1-617-2,619 icshape,40 recomb,177 rosettaMhc,14 sarsCov2PhyloPub,938 spikeMuts,152 spikeMuts,271 strainCons119way,294 strainCons44way,242 unipCov2AliSwissprot,160 unipCov2Chain,413 unipCov2DisulfBond,409 unipCov2Domain,408 unipCov2Interest,89 unipCov2LocCytopl,408 unipCov2LocExtra,408 unipCov2LocSignal,409 unipCov2LocTransMemb,409 unipCov2Modif,412 unipCov2Mut,409 unipCov2Other,409 unipCov2Repeat,407 unipCov2Struct,411 variantMuts,195 variantMuts,259 variantMuts,774 fish augustusGene,201 fit Q0_tracks,769 Q1_tracks,771 Q2_tracks,771 Q3_tracks,771 galaxyEna,771 galaxyEnaQ0Ba-1,767 galaxyEnaQ0Ba-1-1,767 galaxyEnaQ0Ba-1-1-11,767 galaxyEnaQ0Ba-1-17,767 galaxyEnaQ0Ba-2,767 galaxyEnaQ1Ay-4,767 galaxyEnaQ1Ay-4-2,767 galaxyEnaQ1Ay-4-2-2,767 galaxyEnaQ1Ay-43,767 galaxyEnaQ1Ba-1-17,767 galaxyEnaQ2Ay-120,767 galaxyEnaQ2Ay-122,767 galaxyEnaQ2Ay-4,767 galaxyEnaQ2Ay-5,767 galaxyEnaQ2Ay-6,767 galaxyEnaQ3Ay-4,767 galaxyEnaQ3Ay-5,767 galaxyEnaQ3Ay-9,767 galaxyEnaQ3B-1-1-7,767 galaxyEnaQ3B-1-617-2,767 fitzgerald PhyloCSF_smooth,746 PhyloCSFpower,712 five Q0_tracks,369 Q0_tracks,1063 Q0_tracks,1092 Q1_tracks,371 Q1_tracks,1065 Q1_tracks,1094 Q2_tracks,371 Q2_tracks,1065 Q2_tracks,1094 Q3_tracks,371 Q3_tracks,1065 Q3_tracks,1094 galaxyEna,371 galaxyEna,1065 galaxyEna,1094 galaxyEnaQ0Ba-1,367 galaxyEnaQ0Ba-1,1061 galaxyEnaQ0Ba-1,1090 galaxyEnaQ0Ba-1-1,367 galaxyEnaQ0Ba-1-1,1061 galaxyEnaQ0Ba-1-1,1090 galaxyEnaQ0Ba-1-1-11,367 galaxyEnaQ0Ba-1-1-11,1061 galaxyEnaQ0Ba-1-1-11,1090 galaxyEnaQ0Ba-1-17,367 galaxyEnaQ0Ba-1-17,1061 galaxyEnaQ0Ba-1-17,1090 galaxyEnaQ0Ba-2,367 galaxyEnaQ0Ba-2,1061 galaxyEnaQ0Ba-2,1090 galaxyEnaQ1Ay-4,367 galaxyEnaQ1Ay-4,1061 galaxyEnaQ1Ay-4,1090 galaxyEnaQ1Ay-4-2,367 galaxyEnaQ1Ay-4-2,1061 galaxyEnaQ1Ay-4-2,1090 galaxyEnaQ1Ay-4-2-2,367 galaxyEnaQ1Ay-4-2-2,1061 galaxyEnaQ1Ay-4-2-2,1090 galaxyEnaQ1Ay-43,367 galaxyEnaQ1Ay-43,1061 galaxyEnaQ1Ay-43,1090 galaxyEnaQ1Ba-1-17,367 galaxyEnaQ1Ba-1-17,1061 galaxyEnaQ1Ba-1-17,1090 galaxyEnaQ2Ay-120,367 galaxyEnaQ2Ay-120,1061 galaxyEnaQ2Ay-120,1090 galaxyEnaQ2Ay-122,367 galaxyEnaQ2Ay-122,1061 galaxyEnaQ2Ay-122,1090 galaxyEnaQ2Ay-4,367 galaxyEnaQ2Ay-4,1061 galaxyEnaQ2Ay-4,1090 galaxyEnaQ2Ay-5,367 galaxyEnaQ2Ay-5,1061 galaxyEnaQ2Ay-5,1090 galaxyEnaQ2Ay-6,367 galaxyEnaQ2Ay-6,1061 galaxyEnaQ2Ay-6,1090 galaxyEnaQ3Ay-4,367 galaxyEnaQ3Ay-4,1061 galaxyEnaQ3Ay-4,1090 galaxyEnaQ3Ay-5,367 galaxyEnaQ3Ay-5,1061 galaxyEnaQ3Ay-5,1090 galaxyEnaQ3Ay-9,367 galaxyEnaQ3Ay-9,1061 galaxyEnaQ3Ay-9,1090 galaxyEnaQ3B-1-1-7,367 galaxyEnaQ3B-1-1-7,1061 galaxyEnaQ3B-1-1-7,1090 galaxyEnaQ3B-1-617-2,367 galaxyEnaQ3B-1-617-2,1061 galaxyEnaQ3B-1-617-2,1090 icshape,41 fixed PhyloCSF_smooth,387 PhyloCSFpower,403 problematicSites,216 strainCons119way,1940 strainCons44way,1535 fj588686v1 strainCons44way,1211 flag cas13Crispr,230 flagged contacts,191 contacts,275 flanking crisprDet,20 strainCons119way,206 strainCons44way,154 flaws primers,52 flexible pyle,114 florian cd8escape,205 flow abEscape,335 bloomEscMabAvg,339 bloomEscMax,345 bloomEscSerumAvg,340 bloomEscTop,343 escape,342 mccoy,335 rappuoli,342 fluorescent pbmShanghai,228 pbmShanghai,238 fly augustusGene,214 folded pyle,92 folder treangen,286 unipCov2AliSwissprot,378 unipCov2Chain,608 unipCov2DisulfBond,604 unipCov2Domain,603 unipCov2LocCytopl,603 unipCov2LocExtra,603 unipCov2LocSignal,604 unipCov2LocTransMemb,604 unipCov2Modif,607 unipCov2Mut,604 unipCov2Other,604 unipCov2Repeat,602 unipCov2Struct,606 folding Starr_Bloom,271 Starr_Bloom_bind,265 follow contacts,80 followed cpgIslandExt,47 cpgIslandExtUnmasked,50 cpgIslandSuper,47 kimIvtCov,53 following abEscape,258 addgene,79 bloomEscMabAvg,262 bloomEscMax,268 bloomEscSerumAvg,263 bloomEscTop,266 cpgIslandExt,260 cpgIslandExt,408 cpgIslandExtUnmasked,263 cpgIslandExtUnmasked,411 cpgIslandSuper,260 cpgIslandSuper,408 epitopes,98 escape,265 genscan,81 icshape,145 mccoy,258 multiz7way,450 multiz7way,820 nextstrainFreq,234 primers,243 primers,287 problematicSites,172 rappuoli,265 rfam,25 strainCons119way,800 strainCons119way,2198 strainCons44way,748 strainCons44way,1793 variantMuts,1025 windowmaskerSdust,56 follows genscan,67 spikeMuts,186 variantMuts,908 font nextstrainSamples,505 for A_bind_avg,4 A_expr_avg_Expression,4 C_bind_avg,4 C_expr_avg_Expression,4 Calu3_07hpi,103 Calu3_07hpi,112 Calu3_07hpi,115 Calu3_07hpi,288 Calu3_07hpi,294 Calu3_07hpi,335 Calu3_07hpi,342 D_bind_avg,4 D_expr_avg_Expression,4 E_bind_avg,4 E_expr_avg_Expression,4 F_bind_avg,4 F_expr_avg_Expression,4 G_bind_avg,4 G_expr_avg_Expression,4 H_bind_avg,4 H_expr_avg_Expression,4 I_bind_avg,4 I_expr_avg_Expression,4 IgG_Z-score-_COVID-19_patients,50 IgG_Z-score-_COVID-19_patients,167 IgG_Z-score-_COVID-19_patients,230 IgG_Z-score-_COVID-19_patients,234 IgG_Z-score-_COVID-19_patients,237 IgG_Z-score-_COVID-19_patients,304 IgG_Z-score-_COVID-19_patients,339 IgG_Z-score-_COVID-19_patients,367 IgG_Z-score-_COVID-19_patients,391 IgG_Z-score-_COVID-19_patients,398 IgG_Z-score-_COVID-19_patients,430 IgM_Z-score-_COVID-19_patients,50 IgM_Z-score-_COVID-19_patients,167 IgM_Z-score-_COVID-19_patients,230 IgM_Z-score-_COVID-19_patients,234 IgM_Z-score-_COVID-19_patients,237 IgM_Z-score-_COVID-19_patients,304 IgM_Z-score-_COVID-19_patients,339 IgM_Z-score-_COVID-19_patients,367 IgM_Z-score-_COVID-19_patients,391 IgM_Z-score-_COVID-19_patients,398 IgM_Z-score-_COVID-19_patients,430 K_bind_avg,4 K_expr_avg_Expression,4 L_bind_avg,4 L_expr_avg_Expression,4 M_bind_avg,4 M_expr_avg_Expression,4 N_bind_avg,4 N_expr_avg_Expression,4 ORFs,101 ORFs,110 ORFs,113 ORFs,286 ORFs,292 ORFs,333 ORFs,340 P_bind_avg,4 P_expr_avg_Expression,4 PhyloCSF_smooth,84 PhyloCSF_smooth,133 PhyloCSF_smooth,295 PhyloCSF_smooth,298 PhyloCSF_smooth,415 PhyloCSF_smooth,466 PhyloCSF_smooth,616 PhyloCSF_smooth,660 PhyloCSF_smooth,667 PhyloCSFpower,99 PhyloCSFpower,148 PhyloCSFpower,310 PhyloCSFpower,313 PhyloCSFpower,430 PhyloCSFpower,481 PhyloCSFpower,627 Q0_tracks,84 Q0_tracks,89 Q0_tracks,111 Q0_tracks,122 Q0_tracks,145 Q0_tracks,175 Q0_tracks,206 Q0_tracks,241 Q0_tracks,367 Q0_tracks,378 Q0_tracks,402 Q0_tracks,410 Q0_tracks,487 Q0_tracks,524 Q0_tracks,572 Q0_tracks,632 Q0_tracks,704 Q0_tracks,786 Q0_tracks,803 Q0_tracks,845 Q0_tracks,851 Q0_tracks,878 Q0_tracks,905 Q0_tracks,937 Q0_tracks,998 Q0_tracks,1038 Q0_tracks,1069 Q0_tracks,1088 Q0_tracks,1153 Q0_tracks,1343 Q1_tracks,86 Q1_tracks,91 Q1_tracks,113 Q1_tracks,124 Q1_tracks,147 Q1_tracks,177 Q1_tracks,208 Q1_tracks,243 Q1_tracks,369 Q1_tracks,380 Q1_tracks,404 Q1_tracks,412 Q1_tracks,489 Q1_tracks,526 Q1_tracks,574 Q1_tracks,634 Q1_tracks,706 Q1_tracks,788 Q1_tracks,805 Q1_tracks,847 Q1_tracks,853 Q1_tracks,880 Q1_tracks,907 Q1_tracks,939 Q1_tracks,1000 Q1_tracks,1040 Q1_tracks,1071 Q1_tracks,1090 Q1_tracks,1155 Q1_tracks,1345 Q2_tracks,86 Q2_tracks,91 Q2_tracks,113 Q2_tracks,124 Q2_tracks,147 Q2_tracks,177 Q2_tracks,208 Q2_tracks,243 Q2_tracks,369 Q2_tracks,380 Q2_tracks,404 Q2_tracks,412 Q2_tracks,489 Q2_tracks,526 Q2_tracks,574 Q2_tracks,634 Q2_tracks,706 Q2_tracks,788 Q2_tracks,805 Q2_tracks,847 Q2_tracks,853 Q2_tracks,880 Q2_tracks,907 Q2_tracks,939 Q2_tracks,1000 Q2_tracks,1040 Q2_tracks,1071 Q2_tracks,1090 Q2_tracks,1155 Q2_tracks,1345 Q3_tracks,86 Q3_tracks,91 Q3_tracks,113 Q3_tracks,124 Q3_tracks,147 Q3_tracks,177 Q3_tracks,208 Q3_tracks,243 Q3_tracks,369 Q3_tracks,380 Q3_tracks,404 Q3_tracks,412 Q3_tracks,489 Q3_tracks,526 Q3_tracks,574 Q3_tracks,634 Q3_tracks,706 Q3_tracks,788 Q3_tracks,805 Q3_tracks,847 Q3_tracks,853 Q3_tracks,880 Q3_tracks,907 Q3_tracks,939 Q3_tracks,1000 Q3_tracks,1040 Q3_tracks,1071 Q3_tracks,1090 Q3_tracks,1155 Q3_tracks,1345 Q_bind_avg,4 Q_expr_avg_Expression,4 R_bind_avg,4 R_expr_avg_Expression,4 S_bind_avg,4 S_expr_avg_Expression,4 Starr_Bloom,95 Starr_Bloom,227 Starr_Bloom,234 Starr_Bloom_bind,89 Starr_Bloom_bind,221 Starr_Bloom_bind,228 T_bind_avg,4 T_expr_avg_Expression,4 V_bind_avg,4 V_expr_avg_Expression,4 Vero6_05hpi,103 Vero6_05hpi,112 Vero6_05hpi,115 Vero6_05hpi,288 Vero6_05hpi,294 Vero6_05hpi,335 Vero6_05hpi,342 Vero6_24hpi,103 Vero6_24hpi,112 Vero6_24hpi,115 Vero6_24hpi,288 Vero6_24hpi,294 Vero6_24hpi,335 Vero6_24hpi,342 W_bind_avg,4 W_expr_avg_Expression,4 Y_bind_avg,4 Y_expr_avg_Expression,4 abEscape,142 abEscape,231 abEscape,348 abEscape,637 abEscape,679 abEscape,686 addgene,55 addgene,73 addgene,91 addgene,145 addgene,184 addgene,245 artic,19 artic,87 artic,122 artic,150 artic,173 artic,180 articV4,19 articV4,87 articV4,122 articV4,150 articV4,173 articV4,180 articV4_1,19 articV4_1,100 articV4_1,135 articV4_1,163 articV4_1,186 articV4_1,193 augustusGene,34 augustusGene,52 augustusGene,68 augustusGene,80 augustusGene,175 augustusGene,184 augustusGene,192 augustusGene,232 augustusGene,253 augustusGene,260 augustusGene,274 bloomEscMabAvg,146 bloomEscMabAvg,235 bloomEscMabAvg,352 bloomEscMabAvg,641 bloomEscMabAvg,683 bloomEscMabAvg,690 bloomEscMax,152 bloomEscMax,241 bloomEscMax,358 bloomEscMax,647 bloomEscMax,689 bloomEscMax,696 bloomEscSerumAvg,147 bloomEscSerumAvg,236 bloomEscSerumAvg,353 bloomEscSerumAvg,642 bloomEscSerumAvg,684 bloomEscSerumAvg,691 bloomEscTop,150 bloomEscTop,239 bloomEscTop,356 bloomEscTop,645 bloomEscTop,687 bloomEscTop,694 bpmIggCovidSum,59 bpmIggCovidSum,176 bpmIggCovidSum,239 bpmIggCovidSum,243 bpmIggCovidSum,246 bpmIggCovidSum,313 bpmIggCovidSum,348 bpmIggCovidSum,376 bpmIggCovidSum,400 bpmIggCovidSum,407 bpmIggCovidSum,439 bpmIgmCovidSum,59 bpmIgmCovidSum,176 bpmIgmCovidSum,239 bpmIgmCovidSum,243 bpmIgmCovidSum,246 bpmIgmCovidSum,313 bpmIgmCovidSum,348 bpmIgmCovidSum,376 bpmIgmCovidSum,400 bpmIgmCovidSum,407 bpmIgmCovidSum,439 cas13Crispr,18 cas13Crispr,198 cas13Crispr,372 cas13Crispr,407 cas13Crispr,435 cas13Crispr,458 cas13Crispr,465 cas13Crispr,471 contacts,24 contacts,230 contacts,264 contacts,300 contacts,335 contacts,363 contacts,386 contacts,393 cpgIslandExt,133 cpgIslandExt,162 cpgIslandExt,242 cpgIslandExt,246 cpgIslandExt,258 cpgIslandExt,309 cpgIslandExt,500 cpgIslandExt,556 cpgIslandExtUnmasked,136 cpgIslandExtUnmasked,165 cpgIslandExtUnmasked,245 cpgIslandExtUnmasked,249 cpgIslandExtUnmasked,261 cpgIslandExtUnmasked,312 cpgIslandExtUnmasked,503 cpgIslandExtUnmasked,559 cpgIslandSuper,133 cpgIslandSuper,162 cpgIslandSuper,242 cpgIslandSuper,246 cpgIslandSuper,258 cpgIslandSuper,309 cpgIslandSuper,500 cpgIslandSuper,556 crisprDet,50 crisprDet,147 crisprDet,156 cytoBandIdeo,5 epitopes,20 epitopes,44 epitopes,61 epitopes,72 epitopes,91 epitopes,96 epitopes,144 epitopes,153 epitopes,276 epitopes,297 epitopes,309 epitopes,332 escape,149 escape,238 escape,355 escape,644 escape,686 escape,693 galaxyEna,86 galaxyEna,91 galaxyEna,113 galaxyEna,124 galaxyEna,147 galaxyEna,177 galaxyEna,208 galaxyEna,243 galaxyEna,369 galaxyEna,380 galaxyEna,404 galaxyEna,412 galaxyEna,489 galaxyEna,526 galaxyEna,574 galaxyEna,634 galaxyEna,706 galaxyEna,788 galaxyEna,805 galaxyEna,847 galaxyEna,853 galaxyEna,880 galaxyEna,907 galaxyEna,939 galaxyEna,1000 galaxyEna,1040 galaxyEna,1071 galaxyEna,1090 galaxyEna,1155 galaxyEna,1345 galaxyEnaQ0Ba-1,82 galaxyEnaQ0Ba-1,87 galaxyEnaQ0Ba-1,109 galaxyEnaQ0Ba-1,120 galaxyEnaQ0Ba-1,143 galaxyEnaQ0Ba-1,173 galaxyEnaQ0Ba-1,204 galaxyEnaQ0Ba-1,239 galaxyEnaQ0Ba-1,365 galaxyEnaQ0Ba-1,376 galaxyEnaQ0Ba-1,400 galaxyEnaQ0Ba-1,408 galaxyEnaQ0Ba-1,485 galaxyEnaQ0Ba-1,522 galaxyEnaQ0Ba-1,570 galaxyEnaQ0Ba-1,630 galaxyEnaQ0Ba-1,702 galaxyEnaQ0Ba-1,784 galaxyEnaQ0Ba-1,801 galaxyEnaQ0Ba-1,843 galaxyEnaQ0Ba-1,849 galaxyEnaQ0Ba-1,876 galaxyEnaQ0Ba-1,903 galaxyEnaQ0Ba-1,935 galaxyEnaQ0Ba-1,996 galaxyEnaQ0Ba-1,1036 galaxyEnaQ0Ba-1,1067 galaxyEnaQ0Ba-1,1086 galaxyEnaQ0Ba-1,1151 galaxyEnaQ0Ba-1,1341 galaxyEnaQ0Ba-1-1,82 galaxyEnaQ0Ba-1-1,87 galaxyEnaQ0Ba-1-1,109 galaxyEnaQ0Ba-1-1,120 galaxyEnaQ0Ba-1-1,143 galaxyEnaQ0Ba-1-1,173 galaxyEnaQ0Ba-1-1,204 galaxyEnaQ0Ba-1-1,239 galaxyEnaQ0Ba-1-1,365 galaxyEnaQ0Ba-1-1,376 galaxyEnaQ0Ba-1-1,400 galaxyEnaQ0Ba-1-1,408 galaxyEnaQ0Ba-1-1,485 galaxyEnaQ0Ba-1-1,522 galaxyEnaQ0Ba-1-1,570 galaxyEnaQ0Ba-1-1,630 galaxyEnaQ0Ba-1-1,702 galaxyEnaQ0Ba-1-1,784 galaxyEnaQ0Ba-1-1,801 galaxyEnaQ0Ba-1-1,843 galaxyEnaQ0Ba-1-1,849 galaxyEnaQ0Ba-1-1,876 galaxyEnaQ0Ba-1-1,903 galaxyEnaQ0Ba-1-1,935 galaxyEnaQ0Ba-1-1,996 galaxyEnaQ0Ba-1-1,1036 galaxyEnaQ0Ba-1-1,1067 galaxyEnaQ0Ba-1-1,1086 galaxyEnaQ0Ba-1-1,1151 galaxyEnaQ0Ba-1-1,1341 galaxyEnaQ0Ba-1-1-11,82 galaxyEnaQ0Ba-1-1-11,87 galaxyEnaQ0Ba-1-1-11,109 galaxyEnaQ0Ba-1-1-11,120 galaxyEnaQ0Ba-1-1-11,143 galaxyEnaQ0Ba-1-1-11,173 galaxyEnaQ0Ba-1-1-11,204 galaxyEnaQ0Ba-1-1-11,239 galaxyEnaQ0Ba-1-1-11,365 galaxyEnaQ0Ba-1-1-11,376 galaxyEnaQ0Ba-1-1-11,400 galaxyEnaQ0Ba-1-1-11,408 galaxyEnaQ0Ba-1-1-11,485 galaxyEnaQ0Ba-1-1-11,522 galaxyEnaQ0Ba-1-1-11,570 galaxyEnaQ0Ba-1-1-11,630 galaxyEnaQ0Ba-1-1-11,702 galaxyEnaQ0Ba-1-1-11,784 galaxyEnaQ0Ba-1-1-11,801 galaxyEnaQ0Ba-1-1-11,843 galaxyEnaQ0Ba-1-1-11,849 galaxyEnaQ0Ba-1-1-11,876 galaxyEnaQ0Ba-1-1-11,903 galaxyEnaQ0Ba-1-1-11,935 galaxyEnaQ0Ba-1-1-11,996 galaxyEnaQ0Ba-1-1-11,1036 galaxyEnaQ0Ba-1-1-11,1067 galaxyEnaQ0Ba-1-1-11,1086 galaxyEnaQ0Ba-1-1-11,1151 galaxyEnaQ0Ba-1-1-11,1341 galaxyEnaQ0Ba-1-17,82 galaxyEnaQ0Ba-1-17,87 galaxyEnaQ0Ba-1-17,109 galaxyEnaQ0Ba-1-17,120 galaxyEnaQ0Ba-1-17,143 galaxyEnaQ0Ba-1-17,173 galaxyEnaQ0Ba-1-17,204 galaxyEnaQ0Ba-1-17,239 galaxyEnaQ0Ba-1-17,365 galaxyEnaQ0Ba-1-17,376 galaxyEnaQ0Ba-1-17,400 galaxyEnaQ0Ba-1-17,408 galaxyEnaQ0Ba-1-17,485 galaxyEnaQ0Ba-1-17,522 galaxyEnaQ0Ba-1-17,570 galaxyEnaQ0Ba-1-17,630 galaxyEnaQ0Ba-1-17,702 galaxyEnaQ0Ba-1-17,784 galaxyEnaQ0Ba-1-17,801 galaxyEnaQ0Ba-1-17,843 galaxyEnaQ0Ba-1-17,849 galaxyEnaQ0Ba-1-17,876 galaxyEnaQ0Ba-1-17,903 galaxyEnaQ0Ba-1-17,935 galaxyEnaQ0Ba-1-17,996 galaxyEnaQ0Ba-1-17,1036 galaxyEnaQ0Ba-1-17,1067 galaxyEnaQ0Ba-1-17,1086 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galaxyEnaQ1Ay-4,784 galaxyEnaQ1Ay-4,801 galaxyEnaQ1Ay-4,843 galaxyEnaQ1Ay-4,849 galaxyEnaQ1Ay-4,876 galaxyEnaQ1Ay-4,903 galaxyEnaQ1Ay-4,935 galaxyEnaQ1Ay-4,996 galaxyEnaQ1Ay-4,1036 galaxyEnaQ1Ay-4,1067 galaxyEnaQ1Ay-4,1086 galaxyEnaQ1Ay-4,1151 galaxyEnaQ1Ay-4,1341 galaxyEnaQ1Ay-4-2,82 galaxyEnaQ1Ay-4-2,87 galaxyEnaQ1Ay-4-2,109 galaxyEnaQ1Ay-4-2,120 galaxyEnaQ1Ay-4-2,143 galaxyEnaQ1Ay-4-2,173 galaxyEnaQ1Ay-4-2,204 galaxyEnaQ1Ay-4-2,239 galaxyEnaQ1Ay-4-2,365 galaxyEnaQ1Ay-4-2,376 galaxyEnaQ1Ay-4-2,400 galaxyEnaQ1Ay-4-2,408 galaxyEnaQ1Ay-4-2,485 galaxyEnaQ1Ay-4-2,522 galaxyEnaQ1Ay-4-2,570 galaxyEnaQ1Ay-4-2,630 galaxyEnaQ1Ay-4-2,702 galaxyEnaQ1Ay-4-2,784 galaxyEnaQ1Ay-4-2,801 galaxyEnaQ1Ay-4-2,843 galaxyEnaQ1Ay-4-2,849 galaxyEnaQ1Ay-4-2,876 galaxyEnaQ1Ay-4-2,903 galaxyEnaQ1Ay-4-2,935 galaxyEnaQ1Ay-4-2,996 galaxyEnaQ1Ay-4-2,1036 galaxyEnaQ1Ay-4-2,1067 galaxyEnaQ1Ay-4-2,1086 galaxyEnaQ1Ay-4-2,1151 galaxyEnaQ1Ay-4-2,1341 galaxyEnaQ1Ay-4-2-2,82 galaxyEnaQ1Ay-4-2-2,87 galaxyEnaQ1Ay-4-2-2,109 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galaxyEnaQ3B-1-1-7,82 galaxyEnaQ3B-1-1-7,87 galaxyEnaQ3B-1-1-7,109 galaxyEnaQ3B-1-1-7,120 galaxyEnaQ3B-1-1-7,143 galaxyEnaQ3B-1-1-7,173 galaxyEnaQ3B-1-1-7,204 galaxyEnaQ3B-1-1-7,239 galaxyEnaQ3B-1-1-7,365 galaxyEnaQ3B-1-1-7,376 galaxyEnaQ3B-1-1-7,400 galaxyEnaQ3B-1-1-7,408 galaxyEnaQ3B-1-1-7,485 galaxyEnaQ3B-1-1-7,522 galaxyEnaQ3B-1-1-7,570 galaxyEnaQ3B-1-1-7,630 galaxyEnaQ3B-1-1-7,702 galaxyEnaQ3B-1-1-7,784 galaxyEnaQ3B-1-1-7,801 galaxyEnaQ3B-1-1-7,843 galaxyEnaQ3B-1-1-7,849 galaxyEnaQ3B-1-1-7,876 galaxyEnaQ3B-1-1-7,903 galaxyEnaQ3B-1-1-7,935 galaxyEnaQ3B-1-1-7,996 galaxyEnaQ3B-1-1-7,1036 galaxyEnaQ3B-1-1-7,1067 galaxyEnaQ3B-1-1-7,1086 galaxyEnaQ3B-1-1-7,1151 galaxyEnaQ3B-1-1-7,1341 galaxyEnaQ3B-1-617-2,82 galaxyEnaQ3B-1-617-2,87 galaxyEnaQ3B-1-617-2,109 galaxyEnaQ3B-1-617-2,120 galaxyEnaQ3B-1-617-2,143 galaxyEnaQ3B-1-617-2,173 galaxyEnaQ3B-1-617-2,204 galaxyEnaQ3B-1-617-2,239 galaxyEnaQ3B-1-617-2,365 galaxyEnaQ3B-1-617-2,376 galaxyEnaQ3B-1-617-2,400 galaxyEnaQ3B-1-617-2,408 galaxyEnaQ3B-1-617-2,485 galaxyEnaQ3B-1-617-2,522 galaxyEnaQ3B-1-617-2,570 galaxyEnaQ3B-1-617-2,630 galaxyEnaQ3B-1-617-2,702 galaxyEnaQ3B-1-617-2,784 galaxyEnaQ3B-1-617-2,801 galaxyEnaQ3B-1-617-2,843 galaxyEnaQ3B-1-617-2,849 galaxyEnaQ3B-1-617-2,876 galaxyEnaQ3B-1-617-2,903 galaxyEnaQ3B-1-617-2,935 galaxyEnaQ3B-1-617-2,996 galaxyEnaQ3B-1-617-2,1036 galaxyEnaQ3B-1-617-2,1067 galaxyEnaQ3B-1-617-2,1086 galaxyEnaQ3B-1-617-2,1151 galaxyEnaQ3B-1-617-2,1341 gc5BaseBw,64 genscan,49 genscan,71 genscan,124 genscan,131 genscan,174 gordon2,132 gordon2,151 icshape,170 icshape,177 iedb,28 iedb,63 kimIvtCov,111 kimNp,78 kimNp,110 kimRnaMod,134 kimRnaMod,169 kimRnaMod,197 kimRnaMod,220 kimRnaMod,227 kimRnaMod,235 kimTranscripts,44 kimTranscripts,86 kimTranscripts,124 kimTranscripts,351 kimTranscripts,386 kimTranscripts,414 kimTranscripts,438 kimTranscripts,445 kimTranscripts,455 mccoy,142 mccoy,231 mccoy,348 mccoy,637 mccoy,679 mccoy,686 microdel,132 microdel,177 microdel,184 microdel,231 microdel,235 microdel,261 multiz7way,34 multiz7way,288 multiz7way,427 multiz7way,472 multiz7way,505 multiz7way,517 multiz7way,531 multiz7way,579 multiz7way,588 multiz7way,799 multiz7way,1108 ncbiGeneBGP,16 ncbiGeneBGP,33 ncbiGeneBGP,56 ncbiGeneBGP,101 ncbiGeneBGP,105 ncbiGeneBGP,131 ncbiGeneBGP,153 ncbiGeneBGP,160 ncbiGeneBGP,194 ncbiGeneBGP,199 ncbiProducts,19 ncbiProducts,36 ncbiProducts,72 ncbiProducts,117 ncbiProducts,121 ncbiProducts,147 ncbiProducts,169 ncbiProducts,176 ncbiProducts,210 ncbiProducts,215 nextstrainClade,34 nextstrainClade,76 nextstrainClade,175 nextstrainClade,222 nextstrainClade,235 nextstrainFreq,34 nextstrainFreq,167 nextstrainFreq,258 nextstrainFreq,265 nextstrainFreq,355 nextstrainFreq,370 nextstrainGene,32 nextstrainGene,125 nextstrainGene,171 nextstrainGene,184 nextstrainParsimony,5 nextstrainParsimony,51 nextstrainParsimony,102 nextstrainParsimony,131 nextstrainParsimony,138 nextstrainParsimony,324 nextstrainParsimony,434 nextstrainSamples,47 nextstrainSamples,99 nextstrainSamples,116 nextstrainSamples,162 nextstrainSamples,202 nextstrainSamples,371 nextstrainSamples,460 nextstrainSamples,483 nextstrainSamples,540 nextstrainSamples,563 nextstrainSamples,659 nextstrainSamples,742 nextstrainSamples,778 nextstrainSamples,860 nextstrainSamples,911 nextstrainSamples,1069 pbm,59 pbm,176 pbm,239 pbm,243 pbm,246 pbm,313 pbm,348 pbm,376 pbm,400 pbm,407 pbm,439 pbmShanghai,59 pbmShanghai,116 pbmShanghai,141 pbmShanghai,382 pbmShanghai,385 pbmShanghai,430 pbmShanghai,465 pbmShanghai,483 pbmShanghai,490 phyloGenes,54 phyloGenes,63 phyloGenes,348 phyloGenes,383 phyloGenes,411 phyloGenes,435 phyloGenes,442 pond,67 pond,222 poranHla1,14 poranHla1,27 poranHla1,33 poranHla1,63 poranHla1,75 poranHla1,128 poranHla1,161 poranHla1,196 poranHla1,224 poranHla1,248 poranHla1,255 poranHla1,278 poranHla2,14 poranHla2,27 poranHla2,33 poranHla2,63 poranHla2,75 poranHla2,128 poranHla2,161 poranHla2,196 poranHla2,224 poranHla2,248 poranHla2,255 poranHla2,278 potPathoIndel,102 potPathoIndel,145 potPathoIndel,177 primers,123 primers,159 primers,191 primers,214 primers,236 primers,255 problematicSites,11 problematicSites,99 problematicSites,101 problematicSites,476 problematicSitesCaution,8 problematicSitesMask,8 pyle,123 pyle,129 pyle,182 pyle,202 pyle,215 pyle,221 pyle,239 rapid,21 rapid,58 rapid,114 rapid,241 rapid,276 rapid,304 rapid,327 rapid,334 rappuoli,149 rappuoli,238 rappuoli,355 rappuoli,644 rappuoli,686 rappuoli,693 recomb,89 recomb,240 recomb,317 resist,100 resist,130 resist,137 resist,155 resistPred,43 resistPred,83 resistPred,192 resistPred,222 resistPred,229 resistPred,247 resistPred,260 rfam,141 rosettaMhc,79 rosettaMhc,343 rosettaMhc,378 sarsCov2Phylo,82 sarsCov2Phylo,125 sarsCov2Phylo,375 sarsCov2Phylo,513 sarsCov2Phylo,677 sarsCov2Phylo,860 sarsCov2Phylo,956 sarsCov2Phylo,1064 sarsCov2Phylo,1131 sarsCov2PhyloPub,40 sarsCov2PhyloPub,95 sarsCov2PhyloPub,404 sarsCov2PhyloPub,701 sarsCov2PhyloPub,738 sarsCov2PhyloPub,752 sarsCov2PhyloPub,966 sarsCov2PhyloPub,1076 sarsCov2PhyloPub,1184 sarsCov2PhyloPub,1246 sarsCov2PhyloPub,1264 simpleRepeat,30 simpleRepeat,56 spikeMuts,145 spikeMuts,309 spikeMuts,324 spikeMuts,345 spikeMuts,352 spikeMuts,371 strainCons119way,19 strainCons119way,127 strainCons119way,264 strainCons119way,277 strainCons119way,777 strainCons119way,822 strainCons119way,855 strainCons119way,867 strainCons119way,881 strainCons119way,929 strainCons119way,938 strainCons119way,1711 strainCons119way,1845 strainCons119way,1851 strainCons119way,1903 strainCons119way,1988 strainCons119way,1995 strainCons119way,2055 strainCons119way,2486 strainCons44way,16 strainCons44way,75 strainCons44way,212 strainCons44way,225 strainCons44way,725 strainCons44way,770 strainCons44way,803 strainCons44way,815 strainCons44way,829 strainCons44way,877 strainCons44way,886 strainCons44way,1306 strainCons44way,1440 strainCons44way,1446 strainCons44way,1498 strainCons44way,1583 strainCons44way,1590 strainCons44way,1650 strainCons44way,2081 swift,16 swift,170 swift,205 swift,233 swift,256 swift,263 targets,61 transcriptome,36 transcriptome,78 transcriptome,116 transcriptome,357 transcriptome,392 transcriptome,420 transcriptome,444 transcriptome,451 transcriptome,461 treangen,28 treangen,61 treangen,79 treangen,145 treangen,178 treangen,320 ucscToINSDC,45 ucscToRefSeq,39 unipCov2AliSwissprot,88 unipCov2AliSwissprot,123 unipCov2AliSwissprot,136 unipCov2AliSwissprot,218 unipCov2AliSwissprot,277 unipCov2AliSwissprot,333 unipCov2AliSwissprot,337 unipCov2AliSwissprot,361 unipCov2AliSwissprot,390 unipCov2AliSwissprot,397 unipCov2AliSwissprot,433 unipCov2AliSwissprot,438 unipCov2AliSwissprot,490 unipCov2Chain,273 unipCov2Chain,308 unipCov2Chain,342 unipCov2Chain,358 unipCov2Chain,507 unipCov2Chain,563 unipCov2Chain,567 unipCov2Chain,591 unipCov2Chain,620 unipCov2Chain,627 unipCov2Chain,662 unipCov2Chain,667 unipCov2Chain,719 unipCov2DisulfBond,269 unipCov2DisulfBond,304 unipCov2DisulfBond,338 unipCov2DisulfBond,354 unipCov2DisulfBond,503 unipCov2DisulfBond,559 unipCov2DisulfBond,563 unipCov2DisulfBond,587 unipCov2DisulfBond,616 unipCov2DisulfBond,623 unipCov2DisulfBond,658 unipCov2DisulfBond,663 unipCov2DisulfBond,715 unipCov2Domain,268 unipCov2Domain,303 unipCov2Domain,337 unipCov2Domain,353 unipCov2Domain,502 unipCov2Domain,558 unipCov2Domain,562 unipCov2Domain,586 unipCov2Domain,615 unipCov2Domain,622 unipCov2Domain,657 unipCov2Domain,662 unipCov2Domain,714 unipCov2Interest,183 unipCov2Interest,239 unipCov2Interest,243 unipCov2Interest,267 unipCov2Interest,316 unipCov2Interest,321 unipCov2Interest,373 unipCov2LocCytopl,268 unipCov2LocCytopl,303 unipCov2LocCytopl,337 unipCov2LocCytopl,353 unipCov2LocCytopl,502 unipCov2LocCytopl,558 unipCov2LocCytopl,562 unipCov2LocCytopl,586 unipCov2LocCytopl,615 unipCov2LocCytopl,622 unipCov2LocCytopl,657 unipCov2LocCytopl,662 unipCov2LocCytopl,714 unipCov2LocExtra,268 unipCov2LocExtra,303 unipCov2LocExtra,337 unipCov2LocExtra,353 unipCov2LocExtra,502 unipCov2LocExtra,558 unipCov2LocExtra,562 unipCov2LocExtra,586 unipCov2LocExtra,615 unipCov2LocExtra,622 unipCov2LocExtra,657 unipCov2LocExtra,662 unipCov2LocExtra,714 unipCov2LocSignal,269 unipCov2LocSignal,304 unipCov2LocSignal,338 unipCov2LocSignal,354 unipCov2LocSignal,503 unipCov2LocSignal,559 unipCov2LocSignal,563 unipCov2LocSignal,587 unipCov2LocSignal,616 unipCov2LocSignal,623 unipCov2LocSignal,658 unipCov2LocSignal,663 unipCov2LocSignal,715 unipCov2LocTransMemb,269 unipCov2LocTransMemb,304 unipCov2LocTransMemb,338 unipCov2LocTransMemb,354 unipCov2LocTransMemb,503 unipCov2LocTransMemb,559 unipCov2LocTransMemb,563 unipCov2LocTransMemb,587 unipCov2LocTransMemb,616 unipCov2LocTransMemb,623 unipCov2LocTransMemb,658 unipCov2LocTransMemb,663 unipCov2LocTransMemb,715 unipCov2Modif,272 unipCov2Modif,307 unipCov2Modif,341 unipCov2Modif,357 unipCov2Modif,506 unipCov2Modif,562 unipCov2Modif,566 unipCov2Modif,590 unipCov2Modif,619 unipCov2Modif,626 unipCov2Modif,661 unipCov2Modif,666 unipCov2Modif,718 unipCov2Mut,269 unipCov2Mut,304 unipCov2Mut,338 unipCov2Mut,354 unipCov2Mut,503 unipCov2Mut,559 unipCov2Mut,563 unipCov2Mut,587 unipCov2Mut,616 unipCov2Mut,623 unipCov2Mut,658 unipCov2Mut,663 unipCov2Mut,715 unipCov2Other,269 unipCov2Other,304 unipCov2Other,338 unipCov2Other,354 unipCov2Other,503 unipCov2Other,559 unipCov2Other,563 unipCov2Other,587 unipCov2Other,616 unipCov2Other,623 unipCov2Other,658 unipCov2Other,663 unipCov2Other,715 unipCov2Repeat,267 unipCov2Repeat,302 unipCov2Repeat,336 unipCov2Repeat,352 unipCov2Repeat,501 unipCov2Repeat,557 unipCov2Repeat,561 unipCov2Repeat,585 unipCov2Repeat,614 unipCov2Repeat,621 unipCov2Repeat,656 unipCov2Repeat,661 unipCov2Repeat,713 unipCov2Struct,271 unipCov2Struct,306 unipCov2Struct,340 unipCov2Struct,356 unipCov2Struct,505 unipCov2Struct,561 unipCov2Struct,565 unipCov2Struct,589 unipCov2Struct,618 unipCov2Struct,625 unipCov2Struct,660 unipCov2Struct,665 unipCov2Struct,717 vaccines,93 vaccines,112 vaccines,215 vaccines,382 vaccines,423 vaccines,427 vaccines,521 vaccines,626 variantMuts,51 variantMuts,102 variantMuts,780 variantMuts,821 variantMuts,885 variantMuts,888 variantMuts,897 variantMuts,931 variantMuts,934 variantMuts,981 variantMuts,1013 variantMuts,1198 variantMuts,1218 variantMuts,1263 variantMuts,1452 varskip,19 varskip,38 varskip,93 varskip,128 varskip,156 varskip,179 varskip,186 weizmanOrfs,109 weizmanOrfs,118 weizmanOrfs,121 weizmanOrfs,294 weizmanOrfs,300 weizmanOrfs,341 weizmanOrfs,348 windowmaskerSdust,35 windowmaskerSdust,86 windowmaskerSdust,103 force rosettaMhc,218 form Q0_tracks,171 Q0_tracks,250 Q1_tracks,173 Q1_tracks,252 Q2_tracks,173 Q2_tracks,252 Q3_tracks,173 Q3_tracks,252 galaxyEna,173 galaxyEna,252 galaxyEnaQ0Ba-1,169 galaxyEnaQ0Ba-1,248 galaxyEnaQ0Ba-1-1,169 galaxyEnaQ0Ba-1-1,248 galaxyEnaQ0Ba-1-1-11,169 galaxyEnaQ0Ba-1-1-11,248 galaxyEnaQ0Ba-1-17,169 galaxyEnaQ0Ba-1-17,248 galaxyEnaQ0Ba-2,169 galaxyEnaQ0Ba-2,248 galaxyEnaQ1Ay-4,169 galaxyEnaQ1Ay-4,248 galaxyEnaQ1Ay-4-2,169 galaxyEnaQ1Ay-4-2,248 galaxyEnaQ1Ay-4-2-2,169 galaxyEnaQ1Ay-4-2-2,248 galaxyEnaQ1Ay-43,169 galaxyEnaQ1Ay-43,248 galaxyEnaQ1Ba-1-17,169 galaxyEnaQ1Ba-1-17,248 galaxyEnaQ2Ay-120,169 galaxyEnaQ2Ay-120,248 galaxyEnaQ2Ay-122,169 galaxyEnaQ2Ay-122,248 galaxyEnaQ2Ay-4,169 galaxyEnaQ2Ay-4,248 galaxyEnaQ2Ay-5,169 galaxyEnaQ2Ay-5,248 galaxyEnaQ2Ay-6,169 galaxyEnaQ2Ay-6,248 galaxyEnaQ3Ay-4,169 galaxyEnaQ3Ay-4,248 galaxyEnaQ3Ay-5,169 galaxyEnaQ3Ay-5,248 galaxyEnaQ3Ay-9,169 galaxyEnaQ3Ay-9,248 galaxyEnaQ3B-1-1-7,169 galaxyEnaQ3B-1-1-7,248 galaxyEnaQ3B-1-617-2,169 galaxyEnaQ3B-1-617-2,248 publicAnnots,88 strainCons119way,2151 strainCons44way,1746 format Starr_Bloom,182 Starr_Bloom_bind,176 abEscape,582 abEscape,597 abEscape,613 abEscape,636 addgene,219 bloomEscMabAvg,586 bloomEscMabAvg,601 bloomEscMabAvg,617 bloomEscMabAvg,640 bloomEscMax,592 bloomEscMax,607 bloomEscMax,623 bloomEscMax,646 bloomEscSerumAvg,587 bloomEscSerumAvg,602 bloomEscSerumAvg,618 bloomEscSerumAvg,641 bloomEscTop,590 bloomEscTop,605 bloomEscTop,621 bloomEscTop,644 escape,589 escape,604 escape,620 escape,643 gap,62 gold,61 mccoy,582 mccoy,597 mccoy,613 mccoy,636 multiz7way,809 rappuoli,589 rappuoli,604 rappuoli,620 rappuoli,643 resistPred,267 sarsCov2PhyloPub,827 strainCons119way,29 strainCons119way,36 strainCons119way,40 strainCons44way,26 strainCons44way,33 strainCons44way,37 vaccines,110 variantMuts,726 variantMuts,748 formatted variantMuts,962 former variantMuts,278 variantMuts,296 variantMuts,313 variantMuts,329 variantMuts,347 variantMuts,363 variantMuts,377 variantMuts,391 variantMuts,405 variantMuts,420 variantMuts,434 variantMuts,508 variantMuts,636 variantMuts,651 variantMuts,667 variantMuts,682 variantMuts,698 variantMuts,714 formerly multiz7way,825 multiz7way,1210 strainCons119way,2203 strainCons119way,2588 strainCons44way,1798 strainCons44way,2183 formula cpgIslandExt,373 cpgIslandExtUnmasked,376 cpgIslandSuper,373 forward primers,78 found IgG_Z-score-_COVID-19_patients,345 IgM_Z-score-_COVID-19_patients,345 PhyloCSF_smooth,120 PhyloCSFpower,135 Q0_tracks,719 Q1_tracks,721 Q2_tracks,721 Q3_tracks,721 addgene,253 artic,128 articV4,128 articV4_1,141 augustusGene,100 bloomEscTop,21 bpmIggCovidSum,354 bpmIgmCovidSum,354 cas13Crispr,413 contacts,341 galaxyEna,721 galaxyEnaQ0Ba-1,717 galaxyEnaQ0Ba-1-1,717 galaxyEnaQ0Ba-1-1-11,717 galaxyEnaQ0Ba-1-17,717 galaxyEnaQ0Ba-2,717 galaxyEnaQ1Ay-4,717 galaxyEnaQ1Ay-4-2,717 galaxyEnaQ1Ay-4-2-2,717 galaxyEnaQ1Ay-43,717 galaxyEnaQ1Ba-1-17,717 galaxyEnaQ2Ay-120,717 galaxyEnaQ2Ay-122,717 galaxyEnaQ2Ay-4,717 galaxyEnaQ2Ay-5,717 galaxyEnaQ2Ay-6,717 galaxyEnaQ3Ay-4,717 galaxyEnaQ3Ay-5,717 galaxyEnaQ3Ay-9,717 galaxyEnaQ3B-1-1-7,717 galaxyEnaQ3B-1-617-2,717 gold,137 kimRnaMod,175 kimTranscripts,5 kimTranscripts,392 microdel,17 microdel,40 microdel,48 microdel,56 microdel,208 ncbiGeneBGP,113 ncbiProducts,129 nextstrainSamples,272 nextstrainSamples,282 pbm,354 pbmShanghai,471 phyloGenes,389 poranHla1,202 poranHla2,202 primers,98 primers,274 problematicSites,337 pyle,271 rapid,282 recomb,132 rnaStructRangan,36 sarsCov2Phylo,36 sarsCov2Phylo,48 sarsCov2Phylo,739 sarsCov2Phylo,787 sarsCov2PhyloPub,50 sarsCov2PhyloPub,62 strainCons119way,1962 strainCons44way,1557 swift,211 targets,205 transcriptome,398 treangen,113 unipCov2AliSwissprot,257 unipCov2AliSwissprot,302 unipCov2AliSwissprot,345 unipCov2Chain,126 unipCov2Chain,487 unipCov2Chain,532 unipCov2Chain,575 unipCov2DisulfBond,122 unipCov2DisulfBond,483 unipCov2DisulfBond,528 unipCov2DisulfBond,571 unipCov2Domain,121 unipCov2Domain,482 unipCov2Domain,527 unipCov2Domain,570 unipCov2Interest,163 unipCov2Interest,208 unipCov2Interest,251 unipCov2LocCytopl,121 unipCov2LocCytopl,482 unipCov2LocCytopl,527 unipCov2LocCytopl,570 unipCov2LocExtra,121 unipCov2LocExtra,482 unipCov2LocExtra,527 unipCov2LocExtra,570 unipCov2LocSignal,122 unipCov2LocSignal,483 unipCov2LocSignal,528 unipCov2LocSignal,571 unipCov2LocTransMemb,122 unipCov2LocTransMemb,483 unipCov2LocTransMemb,528 unipCov2LocTransMemb,571 unipCov2Modif,125 unipCov2Modif,486 unipCov2Modif,531 unipCov2Modif,574 unipCov2Mut,122 unipCov2Mut,483 unipCov2Mut,528 unipCov2Mut,571 unipCov2Other,122 unipCov2Other,483 unipCov2Other,528 unipCov2Other,571 unipCov2Repeat,120 unipCov2Repeat,481 unipCov2Repeat,526 unipCov2Repeat,569 unipCov2Struct,124 unipCov2Struct,485 unipCov2Struct,530 unipCov2Struct,573 vaccines,435 varskip,134 four Q0_tracks,287 Q0_tracks,667 Q0_tracks,1074 Q1_tracks,289 Q1_tracks,669 Q1_tracks,1076 Q2_tracks,289 Q2_tracks,669 Q2_tracks,1076 Q3_tracks,289 Q3_tracks,669 Q3_tracks,1076 abEscape,138 bloomEscMabAvg,142 bloomEscMax,148 bloomEscSerumAvg,143 bloomEscTop,146 cas13Crispr,111 escape,145 galaxyEna,289 galaxyEna,669 galaxyEna,1076 galaxyEnaQ0Ba-1,285 galaxyEnaQ0Ba-1,665 galaxyEnaQ0Ba-1,1072 galaxyEnaQ0Ba-1-1,285 galaxyEnaQ0Ba-1-1,665 galaxyEnaQ0Ba-1-1,1072 galaxyEnaQ0Ba-1-1-11,285 galaxyEnaQ0Ba-1-1-11,665 galaxyEnaQ0Ba-1-1-11,1072 galaxyEnaQ0Ba-1-17,285 galaxyEnaQ0Ba-1-17,665 galaxyEnaQ0Ba-1-17,1072 galaxyEnaQ0Ba-2,285 galaxyEnaQ0Ba-2,665 galaxyEnaQ0Ba-2,1072 galaxyEnaQ1Ay-4,285 galaxyEnaQ1Ay-4,665 galaxyEnaQ1Ay-4,1072 galaxyEnaQ1Ay-4-2,285 galaxyEnaQ1Ay-4-2,665 galaxyEnaQ1Ay-4-2,1072 galaxyEnaQ1Ay-4-2-2,285 galaxyEnaQ1Ay-4-2-2,665 galaxyEnaQ1Ay-4-2-2,1072 galaxyEnaQ1Ay-43,285 galaxyEnaQ1Ay-43,665 galaxyEnaQ1Ay-43,1072 galaxyEnaQ1Ba-1-17,285 galaxyEnaQ1Ba-1-17,665 galaxyEnaQ1Ba-1-17,1072 galaxyEnaQ2Ay-120,285 galaxyEnaQ2Ay-120,665 galaxyEnaQ2Ay-120,1072 galaxyEnaQ2Ay-122,285 galaxyEnaQ2Ay-122,665 galaxyEnaQ2Ay-122,1072 galaxyEnaQ2Ay-4,285 galaxyEnaQ2Ay-4,665 galaxyEnaQ2Ay-4,1072 galaxyEnaQ2Ay-5,285 galaxyEnaQ2Ay-5,665 galaxyEnaQ2Ay-5,1072 galaxyEnaQ2Ay-6,285 galaxyEnaQ2Ay-6,665 galaxyEnaQ2Ay-6,1072 galaxyEnaQ3Ay-4,285 galaxyEnaQ3Ay-4,665 galaxyEnaQ3Ay-4,1072 galaxyEnaQ3Ay-5,285 galaxyEnaQ3Ay-5,665 galaxyEnaQ3Ay-5,1072 galaxyEnaQ3Ay-9,285 galaxyEnaQ3Ay-9,665 galaxyEnaQ3Ay-9,1072 galaxyEnaQ3B-1-1-7,285 galaxyEnaQ3B-1-1-7,665 galaxyEnaQ3B-1-1-7,1072 galaxyEnaQ3B-1-617-2,285 galaxyEnaQ3B-1-617-2,665 galaxyEnaQ3B-1-617-2,1072 mccoy,138 multiz7way,170 rappuoli,145 strainCons119way,519 strainCons44way,467 variantMuts,165 frac kimRnaMod,95 fraction abEscape,280 abEscape,295 bloomEscMabAvg,284 bloomEscMabAvg,299 bloomEscMax,290 bloomEscMax,305 bloomEscSerumAvg,285 bloomEscSerumAvg,300 bloomEscTop,288 bloomEscTop,303 escape,287 escape,302 kimRnaMod,83 mccoy,280 mccoy,295 rappuoli,287 rappuoli,302 fractions abEscape,343 bloomEscMabAvg,347 bloomEscMax,353 bloomEscSerumAvg,348 bloomEscTop,351 escape,350 mccoy,343 rappuoli,350 fragments gold,4 frame PhyloCSF_minus_1,6 PhyloCSF_minus_2,6 PhyloCSF_minus_3,6 PhyloCSF_plus_1,7 PhyloCSF_plus_2,7 PhyloCSF_plus_3,7 PhyloCSF_smooth,162 PhyloCSF_smooth,340 PhyloCSF_smooth,351 PhyloCSF_smooth,395 PhyloCSF_smooth,575 PhyloCSF_smooth,596 PhyloCSF_smooth,600 PhyloCSFpower,177 PhyloCSFpower,355 PhyloCSFpower,366 PhyloCSFpower,410 PhyloCSFpower,590 PhyloCSFpower,611 multiz7way,487 phyloGenes,108 phyloGenes,134 phyloGenes,210 phyloGenes,233 phyloGenes,311 strainCons119way,837 strainCons44way,785 frames Calu3_07hpi,18 ORFs,16 PhyloCSF_smooth,140 PhyloCSF_smooth,619 PhyloCSFpower,155 PhyloCSFpower,630 Vero6_05hpi,18 Vero6_24hpi,18 multiz7way,471 multiz7way,504 multiz7way,530 rosettaMhc,255 strainCons119way,821 strainCons119way,854 strainCons119way,880 strainCons44way,769 strainCons44way,802 strainCons44way,828 weizmanOrfs,24 frameshift rfam,31 framing multiz7way,779 multiz7way,927 strainCons119way,1651 strainCons119way,2305 strainCons44way,1246 strainCons44way,1900 frankish PhyloCSFpower,728 frcov-nl-2010 strainCons119way,1429 freed rapid,338 fremont abEscape,799 bloomEscMabAvg,803 bloomEscMax,809 bloomEscSerumAvg,804 bloomEscTop,807 escape,806 mccoy,799 rappuoli,806 frequencies PhyloCSF_smooth,41 PhyloCSF_smooth,54 PhyloCSF_smooth,64 PhyloCSFpower,56 PhyloCSFpower,69 PhyloCSFpower,79 strainCons119way,1772 strainCons44way,1367 targets,108 frequency Q0_tracks,433 Q0_tracks,575 Q0_tracks,584 Q0_tracks,728 Q1_tracks,435 Q1_tracks,577 Q1_tracks,586 Q1_tracks,730 Q2_tracks,435 Q2_tracks,577 Q2_tracks,586 Q2_tracks,730 Q3_tracks,435 Q3_tracks,577 Q3_tracks,586 Q3_tracks,730 epitopes,107 galaxyEna,435 galaxyEna,577 galaxyEna,586 galaxyEna,730 galaxyEnaQ0Ba-1,431 galaxyEnaQ0Ba-1,573 galaxyEnaQ0Ba-1,582 galaxyEnaQ0Ba-1,726 galaxyEnaQ0Ba-1-1,431 galaxyEnaQ0Ba-1-1,573 galaxyEnaQ0Ba-1-1,582 galaxyEnaQ0Ba-1-1,726 galaxyEnaQ0Ba-1-1-11,431 galaxyEnaQ0Ba-1-1-11,573 galaxyEnaQ0Ba-1-1-11,582 galaxyEnaQ0Ba-1-1-11,726 galaxyEnaQ0Ba-1-17,431 galaxyEnaQ0Ba-1-17,573 galaxyEnaQ0Ba-1-17,582 galaxyEnaQ0Ba-1-17,726 galaxyEnaQ0Ba-2,431 galaxyEnaQ0Ba-2,573 galaxyEnaQ0Ba-2,582 galaxyEnaQ0Ba-2,726 galaxyEnaQ1Ay-4,431 galaxyEnaQ1Ay-4,573 galaxyEnaQ1Ay-4,582 galaxyEnaQ1Ay-4,726 galaxyEnaQ1Ay-4-2,431 galaxyEnaQ1Ay-4-2,573 galaxyEnaQ1Ay-4-2,582 galaxyEnaQ1Ay-4-2,726 galaxyEnaQ1Ay-4-2-2,431 galaxyEnaQ1Ay-4-2-2,573 galaxyEnaQ1Ay-4-2-2,582 galaxyEnaQ1Ay-4-2-2,726 galaxyEnaQ1Ay-43,431 galaxyEnaQ1Ay-43,573 galaxyEnaQ1Ay-43,582 galaxyEnaQ1Ay-43,726 galaxyEnaQ1Ba-1-17,431 galaxyEnaQ1Ba-1-17,573 galaxyEnaQ1Ba-1-17,582 galaxyEnaQ1Ba-1-17,726 galaxyEnaQ2Ay-120,431 galaxyEnaQ2Ay-120,573 galaxyEnaQ2Ay-120,582 galaxyEnaQ2Ay-120,726 galaxyEnaQ2Ay-122,431 galaxyEnaQ2Ay-122,573 galaxyEnaQ2Ay-122,582 galaxyEnaQ2Ay-122,726 galaxyEnaQ2Ay-4,431 galaxyEnaQ2Ay-4,573 galaxyEnaQ2Ay-4,582 galaxyEnaQ2Ay-4,726 galaxyEnaQ2Ay-5,431 galaxyEnaQ2Ay-5,573 galaxyEnaQ2Ay-5,582 galaxyEnaQ2Ay-5,726 galaxyEnaQ2Ay-6,431 galaxyEnaQ2Ay-6,573 galaxyEnaQ2Ay-6,582 galaxyEnaQ2Ay-6,726 galaxyEnaQ3Ay-4,431 galaxyEnaQ3Ay-4,573 galaxyEnaQ3Ay-4,582 galaxyEnaQ3Ay-4,726 galaxyEnaQ3Ay-5,431 galaxyEnaQ3Ay-5,573 galaxyEnaQ3Ay-5,582 galaxyEnaQ3Ay-5,726 galaxyEnaQ3Ay-9,431 galaxyEnaQ3Ay-9,573 galaxyEnaQ3Ay-9,582 galaxyEnaQ3Ay-9,726 galaxyEnaQ3B-1-1-7,431 galaxyEnaQ3B-1-1-7,573 galaxyEnaQ3B-1-1-7,582 galaxyEnaQ3B-1-1-7,726 galaxyEnaQ3B-1-617-2,431 galaxyEnaQ3B-1-617-2,573 galaxyEnaQ3B-1-617-2,582 galaxyEnaQ3B-1-617-2,726 iggAllSum,4 iggAllSum,13 igmAllSum,4 igmAllSum,13 kimNp,54 multiz7way,747 nextstrainFreq,2 nextstrainFreq,7 nextstrainFreq,85 nextstrainFreq,101 nextstrainFreq19A,7 nextstrainFreq19B,7 nextstrainFreq20A,7 nextstrainFreq20B,7 nextstrainFreq20C,7 nextstrainFreq20D,7 nextstrainFreq20F,7 nextstrainFreq20G,7 nextstrainFreq21A_Delta,9 nextstrainFreq21B_Kappa,9 nextstrainFreq21D_Eta,9 nextstrainFreq21E_Theta,9 nextstrainFreq21F_Iota,9 nextstrainFreq21G_Lambda,9 nextstrainFreq21H_Mu,9 nextstrainFreq21I_Delta,9 nextstrainFreq21J_Delta,9 nextstrainFreqAll,7 nextstrainFreqViewAll,7 nextstrainFreqViewNewClades,7 pbmShanghai,132 pbmShanghai,290 pbmShanghai,299 resistPred,159 sarsCov2PhyloMinAf001,11 sarsCov2PhyloMinAf01,11 sarsCov2PhyloPub,836 sarsCov2PhyloPub,846 sarsCov2PhyloPubAllMinAf001,10 sarsCov2PhyloPubAllMinAf01,10 strainCons119way,1507 strainCons44way,1177 treangen,144 treangen,234 variantMuts,879 variantMuts,925 frequent Q0_tracks,10 Q1_tracks,11 Q2_tracks,11 Q3_tracks,11 frequently Q0_tracks,1065 Q1_tracks,1067 Q2_tracks,1067 Q3_tracks,1067 galaxyEna,1067 galaxyEnaQ0Ba-1,1063 galaxyEnaQ0Ba-1-1,1063 galaxyEnaQ0Ba-1-1-11,1063 galaxyEnaQ0Ba-1-17,1063 galaxyEnaQ0Ba-2,1063 galaxyEnaQ1Ay-4,1063 galaxyEnaQ1Ay-4-2,1063 galaxyEnaQ1Ay-4-2-2,1063 galaxyEnaQ1Ay-43,1063 galaxyEnaQ1Ba-1-17,1063 galaxyEnaQ2Ay-120,1063 galaxyEnaQ2Ay-122,1063 galaxyEnaQ2Ay-4,1063 galaxyEnaQ2Ay-5,1063 galaxyEnaQ2Ay-6,1063 galaxyEnaQ3Ay-4,1063 galaxyEnaQ3Ay-5,1063 galaxyEnaQ3Ay-9,1063 galaxyEnaQ3B-1-1-7,1063 galaxyEnaQ3B-1-617-2,1063 fresco phyloGenes,30 phyloGenes,532 friedrich rfam,116 from Calu3_07hpi,78 Calu3_07hpi,162 Calu3_07hpi,170 Calu3_07hpi,240 Entropy,6 IgG_Z-score-_COVID-19_patients,27 IgG_Z-score-_COVID-19_patients,34 IgG_Z-score-_COVID-19_patients,209 IgG_Z-score-_COVID-19_patients,242 IgG_Z-score-_COVID-19_patients,246 IgG_Z-score-_COVID-19_patients,320 IgG_Z-score-_COVID-19_patients,328 IgM_Z-score-_COVID-19_patients,27 IgM_Z-score-_COVID-19_patients,34 IgM_Z-score-_COVID-19_patients,209 IgM_Z-score-_COVID-19_patients,242 IgM_Z-score-_COVID-19_patients,246 IgM_Z-score-_COVID-19_patients,320 IgM_Z-score-_COVID-19_patients,328 Kim_RNAs,9 Kim_TRS_sgmRNAs,9 Kim_non-TRS_sgmRNAs,9 Negative_Selection,10 ORFs,76 ORFs,160 ORFs,168 ORFs,238 PhyloCSF_smooth,110 PhyloCSF_smooth,242 PhyloCSF_smooth,474 PhyloCSF_smooth,649 PhyloCSFpower,125 PhyloCSFpower,257 PhyloCSFpower,489 PhyloCSFrejected,6 Positive_Selection,10 Q0_tracks,135 Q0_tracks,198 Q0_tracks,293 Q0_tracks,812 Q0_tracks,817 Q0_tracks,1077 Q0_tracks,1147 Q1_tracks,137 Q1_tracks,200 Q1_tracks,295 Q1_tracks,814 Q1_tracks,819 Q1_tracks,1079 Q1_tracks,1149 Q2_tracks,137 Q2_tracks,200 Q2_tracks,295 Q2_tracks,814 Q2_tracks,819 Q2_tracks,1079 Q2_tracks,1149 Q3_tracks,137 Q3_tracks,200 Q3_tracks,295 Q3_tracks,814 Q3_tracks,819 Q3_tracks,1079 Q3_tracks,1149 Starr_Bloom,35 Starr_Bloom,163 Starr_Bloom,172 Starr_Bloom_bind,32 Starr_Bloom_bind,157 Starr_Bloom_bind,166 Vero6_05hpi,78 Vero6_05hpi,162 Vero6_05hpi,170 Vero6_05hpi,240 Vero6_24hpi,78 Vero6_24hpi,162 Vero6_24hpi,170 Vero6_24hpi,240 abEscape,4 abEscape,27 abEscape,56 abEscape,95 abEscape,190 abEscape,203 abEscape,251 abEscape,309 abEscape,414 abEscape,419 abEscape,573 abEscape,587 abEscape,604 abEscape,624 abEscape,646 abEscape,893 addgene,153 addgene,177 artic,53 artic,103 artic,111 articV4,56 articV4,103 articV4,111 articV4_1,67 articV4_1,116 articV4_1,124 augustusGene,19 bloomEscMabAvg,31 bloomEscMabAvg,60 bloomEscMabAvg,99 bloomEscMabAvg,194 bloomEscMabAvg,207 bloomEscMabAvg,255 bloomEscMabAvg,313 bloomEscMabAvg,418 bloomEscMabAvg,423 bloomEscMabAvg,577 bloomEscMabAvg,591 bloomEscMabAvg,608 bloomEscMabAvg,628 bloomEscMabAvg,650 bloomEscMabAvg,897 bloomEscMax,20 bloomEscMax,37 bloomEscMax,66 bloomEscMax,105 bloomEscMax,200 bloomEscMax,213 bloomEscMax,261 bloomEscMax,319 bloomEscMax,424 bloomEscMax,429 bloomEscMax,583 bloomEscMax,597 bloomEscMax,614 bloomEscMax,634 bloomEscMax,656 bloomEscMax,903 bloomEscSerumAvg,32 bloomEscSerumAvg,61 bloomEscSerumAvg,100 bloomEscSerumAvg,195 bloomEscSerumAvg,208 bloomEscSerumAvg,256 bloomEscSerumAvg,314 bloomEscSerumAvg,419 bloomEscSerumAvg,424 bloomEscSerumAvg,578 bloomEscSerumAvg,592 bloomEscSerumAvg,609 bloomEscSerumAvg,629 bloomEscSerumAvg,651 bloomEscSerumAvg,898 bloomEscTop,35 bloomEscTop,64 bloomEscTop,103 bloomEscTop,198 bloomEscTop,211 bloomEscTop,259 bloomEscTop,317 bloomEscTop,422 bloomEscTop,427 bloomEscTop,581 bloomEscTop,595 bloomEscTop,612 bloomEscTop,632 bloomEscTop,654 bloomEscTop,901 bloomEscTotal,20 bpmIggCovidSum,36 bpmIggCovidSum,43 bpmIggCovidSum,218 bpmIggCovidSum,251 bpmIggCovidSum,255 bpmIggCovidSum,329 bpmIggCovidSum,337 bpmIgmCovidSum,36 bpmIgmCovidSum,43 bpmIgmCovidSum,218 bpmIgmCovidSum,251 bpmIgmCovidSum,255 bpmIgmCovidSum,329 bpmIgmCovidSum,337 cas13Crispr,219 cas13Crispr,388 cas13Crispr,396 cd8escape,9 cd8escape,95 cd8escape,143 cd8escape,157 contacts,27 contacts,316 contacts,324 cpgIslandExt,81 cpgIslandExt,496 cpgIslandExt,535 cpgIslandExt,563 cpgIslandExt,574 cpgIslandExtUnmasked,84 cpgIslandExtUnmasked,499 cpgIslandExtUnmasked,538 cpgIslandExtUnmasked,566 cpgIslandExtUnmasked,577 cpgIslandSuper,81 cpgIslandSuper,496 cpgIslandSuper,535 cpgIslandSuper,563 cpgIslandSuper,574 crisprDet,102 crisprDet,106 epitopes,5 epitopes,48 epitopes,67 escape,12 escape,34 escape,63 escape,102 escape,197 escape,210 escape,258 escape,316 escape,421 escape,426 escape,580 escape,594 escape,611 escape,631 escape,653 escape,900 galaxyEna,137 galaxyEna,200 galaxyEna,295 galaxyEna,814 galaxyEna,819 galaxyEna,1079 galaxyEna,1149 galaxyEnaQ0Ba-1,133 galaxyEnaQ0Ba-1,196 galaxyEnaQ0Ba-1,291 galaxyEnaQ0Ba-1,810 galaxyEnaQ0Ba-1,815 galaxyEnaQ0Ba-1,1075 galaxyEnaQ0Ba-1,1145 galaxyEnaQ0Ba-1-1,133 galaxyEnaQ0Ba-1-1,196 galaxyEnaQ0Ba-1-1,291 galaxyEnaQ0Ba-1-1,810 galaxyEnaQ0Ba-1-1,815 galaxyEnaQ0Ba-1-1,1075 galaxyEnaQ0Ba-1-1,1145 galaxyEnaQ0Ba-1-1-11,133 galaxyEnaQ0Ba-1-1-11,196 galaxyEnaQ0Ba-1-1-11,291 galaxyEnaQ0Ba-1-1-11,810 galaxyEnaQ0Ba-1-1-11,815 galaxyEnaQ0Ba-1-1-11,1075 galaxyEnaQ0Ba-1-1-11,1145 galaxyEnaQ0Ba-1-17,133 galaxyEnaQ0Ba-1-17,196 galaxyEnaQ0Ba-1-17,291 galaxyEnaQ0Ba-1-17,810 galaxyEnaQ0Ba-1-17,815 galaxyEnaQ0Ba-1-17,1075 galaxyEnaQ0Ba-1-17,1145 galaxyEnaQ0Ba-2,133 galaxyEnaQ0Ba-2,196 galaxyEnaQ0Ba-2,291 galaxyEnaQ0Ba-2,810 galaxyEnaQ0Ba-2,815 galaxyEnaQ0Ba-2,1075 galaxyEnaQ0Ba-2,1145 galaxyEnaQ1Ay-4,133 galaxyEnaQ1Ay-4,196 galaxyEnaQ1Ay-4,291 galaxyEnaQ1Ay-4,810 galaxyEnaQ1Ay-4,815 galaxyEnaQ1Ay-4,1075 galaxyEnaQ1Ay-4,1145 galaxyEnaQ1Ay-4-2,133 galaxyEnaQ1Ay-4-2,196 galaxyEnaQ1Ay-4-2,291 galaxyEnaQ1Ay-4-2,810 galaxyEnaQ1Ay-4-2,815 galaxyEnaQ1Ay-4-2,1075 galaxyEnaQ1Ay-4-2,1145 galaxyEnaQ1Ay-4-2-2,133 galaxyEnaQ1Ay-4-2-2,196 galaxyEnaQ1Ay-4-2-2,291 galaxyEnaQ1Ay-4-2-2,810 galaxyEnaQ1Ay-4-2-2,815 galaxyEnaQ1Ay-4-2-2,1075 galaxyEnaQ1Ay-4-2-2,1145 galaxyEnaQ1Ay-43,133 galaxyEnaQ1Ay-43,196 galaxyEnaQ1Ay-43,291 galaxyEnaQ1Ay-43,810 galaxyEnaQ1Ay-43,815 galaxyEnaQ1Ay-43,1075 galaxyEnaQ1Ay-43,1145 galaxyEnaQ1Ba-1-17,133 galaxyEnaQ1Ba-1-17,196 galaxyEnaQ1Ba-1-17,291 galaxyEnaQ1Ba-1-17,810 galaxyEnaQ1Ba-1-17,815 galaxyEnaQ1Ba-1-17,1075 galaxyEnaQ1Ba-1-17,1145 galaxyEnaQ2Ay-120,133 galaxyEnaQ2Ay-120,196 galaxyEnaQ2Ay-120,291 galaxyEnaQ2Ay-120,810 galaxyEnaQ2Ay-120,815 galaxyEnaQ2Ay-120,1075 galaxyEnaQ2Ay-120,1145 galaxyEnaQ2Ay-122,133 galaxyEnaQ2Ay-122,196 galaxyEnaQ2Ay-122,291 galaxyEnaQ2Ay-122,810 galaxyEnaQ2Ay-122,815 galaxyEnaQ2Ay-122,1075 galaxyEnaQ2Ay-122,1145 galaxyEnaQ2Ay-4,133 galaxyEnaQ2Ay-4,196 galaxyEnaQ2Ay-4,291 galaxyEnaQ2Ay-4,810 galaxyEnaQ2Ay-4,815 galaxyEnaQ2Ay-4,1075 galaxyEnaQ2Ay-4,1145 galaxyEnaQ2Ay-5,133 galaxyEnaQ2Ay-5,196 galaxyEnaQ2Ay-5,291 galaxyEnaQ2Ay-5,810 galaxyEnaQ2Ay-5,815 galaxyEnaQ2Ay-5,1075 galaxyEnaQ2Ay-5,1145 galaxyEnaQ2Ay-6,133 galaxyEnaQ2Ay-6,196 galaxyEnaQ2Ay-6,291 galaxyEnaQ2Ay-6,810 galaxyEnaQ2Ay-6,815 galaxyEnaQ2Ay-6,1075 galaxyEnaQ2Ay-6,1145 galaxyEnaQ3Ay-4,133 galaxyEnaQ3Ay-4,196 galaxyEnaQ3Ay-4,291 galaxyEnaQ3Ay-4,810 galaxyEnaQ3Ay-4,815 galaxyEnaQ3Ay-4,1075 galaxyEnaQ3Ay-4,1145 galaxyEnaQ3Ay-5,133 galaxyEnaQ3Ay-5,196 galaxyEnaQ3Ay-5,291 galaxyEnaQ3Ay-5,810 galaxyEnaQ3Ay-5,815 galaxyEnaQ3Ay-5,1075 galaxyEnaQ3Ay-5,1145 galaxyEnaQ3Ay-9,133 galaxyEnaQ3Ay-9,196 galaxyEnaQ3Ay-9,291 galaxyEnaQ3Ay-9,810 galaxyEnaQ3Ay-9,815 galaxyEnaQ3Ay-9,1075 galaxyEnaQ3Ay-9,1145 galaxyEnaQ3B-1-1-7,133 galaxyEnaQ3B-1-1-7,196 galaxyEnaQ3B-1-1-7,291 galaxyEnaQ3B-1-1-7,810 galaxyEnaQ3B-1-1-7,815 galaxyEnaQ3B-1-1-7,1075 galaxyEnaQ3B-1-1-7,1145 galaxyEnaQ3B-1-617-2,133 galaxyEnaQ3B-1-617-2,196 galaxyEnaQ3B-1-617-2,291 galaxyEnaQ3B-1-617-2,810 galaxyEnaQ3B-1-617-2,815 galaxyEnaQ3B-1-617-2,1075 galaxyEnaQ3B-1-617-2,1145 gap,47 genscan,15 gold,3 gold,46 gordon2,6 gordon2,20 gordon2,185 icshape,93 icshape,116 iedb,3 iedb,7 kimIvtCov,26 kimNp,6 kimRnaMod,7 kimRnaMod,150 kimRnaMod,158 kimTranscripts,59 kimTranscripts,243 kimTranscripts,284 kimTranscripts,312 kimTranscripts,367 kimTranscripts,375 mccoy,27 mccoy,56 mccoy,95 mccoy,190 mccoy,203 mccoy,251 mccoy,309 mccoy,414 mccoy,419 mccoy,573 mccoy,587 mccoy,604 mccoy,624 mccoy,646 mccoy,893 microdel,116 microdel,166 multiz7way,429 multiz7way,476 multiz7way,730 multiz7way,781 ncbiGeneBGP,5 ncbiGeneBGP,28 ncbiGeneBGP,72 ncbiGeneBGP,91 ncbiGeneBGP,178 ncbiProducts,31 ncbiProducts,88 ncbiProducts,107 ncbiProducts,194 nextstrainClade,44 nextstrainClade,124 nextstrainClade,189 nextstrainClade,213 nextstrainFreq,44 nextstrainFreq,65 nextstrainFreq,136 nextstrainFreq,182 nextstrainFreq,205 nextstrainFreq,332 nextstrainGene,40 nextstrainGene,86 nextstrainGene,94 nextstrainGene,139 nextstrainGene,162 nextstrainParsimony,61 nextstrainParsimony,82 nextstrainParsimony,279 nextstrainParsimony,291 nextstrainParsimony,337 nextstrainParsimony,351 nextstrainParsimony,374 nextstrainParsimony,420 nextstrainSamples,55 nextstrainSamples,106 nextstrainSamples,452 nextstrainSamples,604 nextstrainSamples,670 nextstrainSamples,744 nextstrainSamples,760 nextstrainSamples,773 nextstrainSamples,897 pbm,11 pbm,36 pbm,43 pbm,218 pbm,251 pbm,255 pbm,329 pbm,337 pbmShanghai,11 pbmShanghai,39 pbmShanghai,45 pbmShanghai,74 pbmShanghai,266 pbmShanghai,361 pbmShanghai,365 pbmShanghai,390 pbmShanghai,446 pbmShanghai,454 pdb,51 pdb,105 phyloGenes,364 phyloGenes,372 pond,7 pond,21 pond,43 pond,85 poranHla1,177 poranHla1,185 poranHla2,177 poranHla2,185 potPathoIndel,9 potPathoIndel,45 potPathoIndel,95 potPathoIndel,172 potPathoIndel,187 primers,32 primers,50 primers,56 primers,241 primers,326 primers,350 primers,367 problematicSites,29 problematicSites,83 problematicSites,199 problematicSites,229 problematicSites,307 problematicSites,340 problematicSites,393 problematicSites,490 problematicSites,509 problematicSites,532 problematicSites,579 publicAnnots,49 pyle,7 pyle,19 pyle,159 pyle,248 rapid,194 rapid,257 rapid,265 rappuoli,12 rappuoli,15 rappuoli,34 rappuoli,63 rappuoli,102 rappuoli,197 rappuoli,210 rappuoli,258 rappuoli,316 rappuoli,421 rappuoli,426 rappuoli,580 rappuoli,594 rappuoli,611 rappuoli,631 rappuoli,653 rappuoli,900 recomb,5 recomb,24 recomb,77 recomb,126 recomb,138 recomb,283 recomb,307 resist,40 resist,53 resist,116 resist,145 resistPred,9 resistPred,61 resistPred,73 resistPred,208 resistPred,237 rfam,19 rosettaMhc,63 rosettaMhc,135 rosettaMhc,252 rosettaMhc,330 rosettaMhc,384 sarsCov2Phylo,27 sarsCov2Phylo,145 sarsCov2Phylo,578 sarsCov2Phylo,714 sarsCov2Phylo,755 sarsCov2Phylo,833 sarsCov2Phylo,1090 sarsCov2PhyloPub,30 sarsCov2PhyloPub,151 sarsCov2PhyloPub,603 sarsCov2PhyloPub,720 sarsCov2PhyloPub,734 sarsCov2PhyloPub,813 sarsCov2PhyloPub,884 sarsCov2PhyloPub,916 sarsCov2PhyloPub,1047 sarsCov2PhyloPub,1210 spikeMuts,6 spikeMuts,318 spikeMuts,333 strainCons119way,67 strainCons119way,89 strainCons119way,97 strainCons119way,102 strainCons119way,123 strainCons119way,779 strainCons119way,826 strainCons119way,1490 strainCons119way,1653 strainCons119way,1720 strainCons119way,1738 strainCons119way,1748 strainCons119way,1821 strainCons44way,71 strainCons44way,727 strainCons44way,774 strainCons44way,1160 strainCons44way,1248 strainCons44way,1315 strainCons44way,1333 strainCons44way,1343 strainCons44way,1416 swift,36 swift,87 swift,134 swift,144 swift,186 swift,194 targets,16 targets,222 transcriptome,51 transcriptome,143 transcriptome,287 transcriptome,330 transcriptome,373 transcriptome,381 treangen,7 treangen,94 treangen,117 treangen,199 treangen,207 treangen,282 ucscToINSDC,25 ucscToINSDC,37 ucscToRefSeq,20 ucscToRefSeq,31 unipCov2AliSwissprot,21 unipCov2AliSwissprot,64 unipCov2AliSwissprot,186 unipCov2AliSwissprot,293 unipCov2AliSwissprot,323 unipCov2AliSwissprot,412 unipCov2AliSwissprot,421 unipCov2Chain,20 unipCov2Chain,34 unipCov2Chain,66 unipCov2Chain,88 unipCov2Chain,135 unipCov2Chain,366 unipCov2Chain,439 unipCov2Chain,523 unipCov2Chain,553 unipCov2Chain,642 unipCov2Chain,651 unipCov2DisulfBond,16 unipCov2DisulfBond,30 unipCov2DisulfBond,62 unipCov2DisulfBond,84 unipCov2DisulfBond,131 unipCov2DisulfBond,362 unipCov2DisulfBond,435 unipCov2DisulfBond,519 unipCov2DisulfBond,549 unipCov2DisulfBond,638 unipCov2DisulfBond,647 unipCov2Domain,15 unipCov2Domain,29 unipCov2Domain,61 unipCov2Domain,83 unipCov2Domain,130 unipCov2Domain,361 unipCov2Domain,434 unipCov2Domain,518 unipCov2Domain,548 unipCov2Domain,637 unipCov2Domain,646 unipCov2Interest,22 unipCov2Interest,36 unipCov2Interest,115 unipCov2Interest,199 unipCov2Interest,229 unipCov2Interest,295 unipCov2Interest,304 unipCov2LocCytopl,15 unipCov2LocCytopl,29 unipCov2LocCytopl,61 unipCov2LocCytopl,83 unipCov2LocCytopl,130 unipCov2LocCytopl,361 unipCov2LocCytopl,434 unipCov2LocCytopl,518 unipCov2LocCytopl,548 unipCov2LocCytopl,637 unipCov2LocCytopl,646 unipCov2LocExtra,15 unipCov2LocExtra,29 unipCov2LocExtra,61 unipCov2LocExtra,83 unipCov2LocExtra,130 unipCov2LocExtra,361 unipCov2LocExtra,434 unipCov2LocExtra,518 unipCov2LocExtra,548 unipCov2LocExtra,637 unipCov2LocExtra,646 unipCov2LocSignal,16 unipCov2LocSignal,30 unipCov2LocSignal,62 unipCov2LocSignal,84 unipCov2LocSignal,131 unipCov2LocSignal,362 unipCov2LocSignal,435 unipCov2LocSignal,519 unipCov2LocSignal,549 unipCov2LocSignal,638 unipCov2LocSignal,647 unipCov2LocTransMemb,16 unipCov2LocTransMemb,30 unipCov2LocTransMemb,62 unipCov2LocTransMemb,84 unipCov2LocTransMemb,131 unipCov2LocTransMemb,362 unipCov2LocTransMemb,435 unipCov2LocTransMemb,519 unipCov2LocTransMemb,549 unipCov2LocTransMemb,638 unipCov2LocTransMemb,647 unipCov2Modif,19 unipCov2Modif,33 unipCov2Modif,65 unipCov2Modif,87 unipCov2Modif,134 unipCov2Modif,365 unipCov2Modif,438 unipCov2Modif,522 unipCov2Modif,552 unipCov2Modif,641 unipCov2Modif,650 unipCov2Mut,16 unipCov2Mut,30 unipCov2Mut,62 unipCov2Mut,84 unipCov2Mut,131 unipCov2Mut,362 unipCov2Mut,435 unipCov2Mut,519 unipCov2Mut,549 unipCov2Mut,638 unipCov2Mut,647 unipCov2Other,16 unipCov2Other,30 unipCov2Other,62 unipCov2Other,84 unipCov2Other,131 unipCov2Other,362 unipCov2Other,435 unipCov2Other,519 unipCov2Other,549 unipCov2Other,638 unipCov2Other,647 unipCov2Repeat,14 unipCov2Repeat,28 unipCov2Repeat,60 unipCov2Repeat,82 unipCov2Repeat,129 unipCov2Repeat,360 unipCov2Repeat,433 unipCov2Repeat,517 unipCov2Repeat,547 unipCov2Repeat,636 unipCov2Repeat,645 unipCov2Struct,18 unipCov2Struct,32 unipCov2Struct,64 unipCov2Struct,86 unipCov2Struct,133 unipCov2Struct,364 unipCov2Struct,437 unipCov2Struct,521 unipCov2Struct,551 unipCov2Struct,640 unipCov2Struct,649 vaccines,103 vaccines,193 vaccines,367 vaccines,395 vaccines,413 vaccines,527 variantAaMuts_BA_2,10 variantAaMuts_BA_2_12_1,10 variantAaMuts_BA_2_75,10 variantAaMuts_BA_2_86,10 variantAaMuts_BA_4,10 variantAaMuts_BA_5,10 variantAaMuts_BQ_1,10 variantAaMuts_B_1_1_529,12 variantAaMuts_CH_1_1,10 variantAaMuts_EG_5_1,10 variantAaMuts_HK_3,10 variantAaMuts_JN_1,10 variantAaMuts_XBB,10 variantAaMuts_XBB_1_16,10 variantAaMuts_XBB_1_5,10 variantAaMuts_XBB_1_5_70,10 variantAaMuts_XBB_1_9,10 variantAaMuts_XBB_2_3,10 variantMuts,71 variantMuts,74 variantMuts,84 variantMuts,796 variantMuts,843 variantMuts,851 variantMuts,866 variantMuts,984 variantMuts,1008 variantMuts,1034 variantMuts,1179 variantMuts,1355 variantMuts,1425 variantMuts,1441 variantNucMuts_BA_2,11 variantNucMuts_BA_2_12_1,11 variantNucMuts_BA_2_75,11 variantNucMuts_BA_2_86,11 variantNucMuts_BA_4,11 variantNucMuts_BA_5,11 variantNucMuts_BQ_1,11 variantNucMuts_B_1_1_529,13 variantNucMuts_CH_1_1,11 variantNucMuts_EG_5_1,11 variantNucMuts_HK_3,11 variantNucMuts_JN_1,11 variantNucMuts_XBB,11 variantNucMuts_XBB_1_16,11 variantNucMuts_XBB_1_5,11 variantNucMuts_XBB_1_5_70,11 variantNucMuts_XBB_1_9,11 variantNucMuts_XBB_2_3,11 varskip,61 varskip,109 varskip,117 weizmanOrfs,84 weizmanOrfs,168 weizmanOrfs,176 weizmanOrfs,246 windowmaskerSdust,41 frommer cpgIslandExt,606 cpgIslandExtUnmasked,609 cpgIslandSuper,606 frontiers vaccines,586 ftp Q0_tracks,235 Q0_tracks,819 Q0_tracks,1029 Q0_tracks,1059 Q1_tracks,237 Q1_tracks,821 Q1_tracks,1031 Q1_tracks,1061 Q2_tracks,237 Q2_tracks,821 Q2_tracks,1031 Q2_tracks,1061 Q3_tracks,237 Q3_tracks,821 Q3_tracks,1031 Q3_tracks,1061 galaxyEna,237 galaxyEna,821 galaxyEna,1031 galaxyEna,1061 galaxyEnaQ0Ba-1,233 galaxyEnaQ0Ba-1,817 galaxyEnaQ0Ba-1,1027 galaxyEnaQ0Ba-1,1057 galaxyEnaQ0Ba-1-1,233 galaxyEnaQ0Ba-1-1,817 galaxyEnaQ0Ba-1-1,1027 galaxyEnaQ0Ba-1-1,1057 galaxyEnaQ0Ba-1-1-11,233 galaxyEnaQ0Ba-1-1-11,817 galaxyEnaQ0Ba-1-1-11,1027 galaxyEnaQ0Ba-1-1-11,1057 galaxyEnaQ0Ba-1-17,233 galaxyEnaQ0Ba-1-17,817 galaxyEnaQ0Ba-1-17,1027 galaxyEnaQ0Ba-1-17,1057 galaxyEnaQ0Ba-2,233 galaxyEnaQ0Ba-2,817 galaxyEnaQ0Ba-2,1027 galaxyEnaQ0Ba-2,1057 galaxyEnaQ1Ay-4,233 galaxyEnaQ1Ay-4,817 galaxyEnaQ1Ay-4,1027 galaxyEnaQ1Ay-4,1057 galaxyEnaQ1Ay-4-2,233 galaxyEnaQ1Ay-4-2,817 galaxyEnaQ1Ay-4-2,1027 galaxyEnaQ1Ay-4-2,1057 galaxyEnaQ1Ay-4-2-2,233 galaxyEnaQ1Ay-4-2-2,817 galaxyEnaQ1Ay-4-2-2,1027 galaxyEnaQ1Ay-4-2-2,1057 galaxyEnaQ1Ay-43,233 galaxyEnaQ1Ay-43,817 galaxyEnaQ1Ay-43,1027 galaxyEnaQ1Ay-43,1057 galaxyEnaQ1Ba-1-17,233 galaxyEnaQ1Ba-1-17,817 galaxyEnaQ1Ba-1-17,1027 galaxyEnaQ1Ba-1-17,1057 galaxyEnaQ2Ay-120,233 galaxyEnaQ2Ay-120,817 galaxyEnaQ2Ay-120,1027 galaxyEnaQ2Ay-120,1057 galaxyEnaQ2Ay-122,233 galaxyEnaQ2Ay-122,817 galaxyEnaQ2Ay-122,1027 galaxyEnaQ2Ay-122,1057 galaxyEnaQ2Ay-4,233 galaxyEnaQ2Ay-4,817 galaxyEnaQ2Ay-4,1027 galaxyEnaQ2Ay-4,1057 galaxyEnaQ2Ay-5,233 galaxyEnaQ2Ay-5,817 galaxyEnaQ2Ay-5,1027 galaxyEnaQ2Ay-5,1057 galaxyEnaQ2Ay-6,233 galaxyEnaQ2Ay-6,817 galaxyEnaQ2Ay-6,1027 galaxyEnaQ2Ay-6,1057 galaxyEnaQ3Ay-4,233 galaxyEnaQ3Ay-4,817 galaxyEnaQ3Ay-4,1027 galaxyEnaQ3Ay-4,1057 galaxyEnaQ3Ay-5,233 galaxyEnaQ3Ay-5,817 galaxyEnaQ3Ay-5,1027 galaxyEnaQ3Ay-5,1057 galaxyEnaQ3Ay-9,233 galaxyEnaQ3Ay-9,817 galaxyEnaQ3Ay-9,1027 galaxyEnaQ3Ay-9,1057 galaxyEnaQ3B-1-1-7,233 galaxyEnaQ3B-1-1-7,817 galaxyEnaQ3B-1-1-7,1027 galaxyEnaQ3B-1-1-7,1057 galaxyEnaQ3B-1-617-2,233 galaxyEnaQ3B-1-617-2,817 galaxyEnaQ3B-1-617-2,1027 galaxyEnaQ3B-1-617-2,1057 windowmaskerSdust,44 full Calu3_07hpi,85 ORFs,83 PhyloCSF_smooth,216 PhyloCSFpower,231 Q0_tracks,551 Q1_tracks,553 Q2_tracks,553 Q3_tracks,553 Vero6_05hpi,85 Vero6_24hpi,85 abEscape,404 addgene,143 bloomEscMabAvg,408 bloomEscMax,414 bloomEscSerumAvg,409 bloomEscTop,412 epitopes,84 escape,411 galaxyEna,553 galaxyEnaQ0Ba-1,549 galaxyEnaQ0Ba-1-1,549 galaxyEnaQ0Ba-1-1-11,549 galaxyEnaQ0Ba-1-17,549 galaxyEnaQ0Ba-2,549 galaxyEnaQ1Ay-4,549 galaxyEnaQ1Ay-4-2,549 galaxyEnaQ1Ay-4-2-2,549 galaxyEnaQ1Ay-43,549 galaxyEnaQ1Ba-1-17,549 galaxyEnaQ2Ay-120,549 galaxyEnaQ2Ay-122,549 galaxyEnaQ2Ay-4,549 galaxyEnaQ2Ay-5,549 galaxyEnaQ2Ay-6,549 galaxyEnaQ3Ay-4,549 galaxyEnaQ3Ay-5,549 galaxyEnaQ3Ay-9,549 galaxyEnaQ3B-1-1-7,549 galaxyEnaQ3B-1-617-2,549 mccoy,404 microdel,203 multiz7way,120 nextstrainSamples,534 poranHla1,130 poranHla2,130 pyle,149 rapid,186 rappuoli,411 resist,82 resistPred,152 rosettaMhc,345 sarsCov2Phylo,678 sarsCov2Phylo,815 sarsCov2PhyloPub,366 sarsCov2PhyloPub,702 sarsCov2PhyloPub,897 strainCons119way,469 strainCons119way,2190 strainCons44way,417 strainCons44way,1785 swift,123 unipCov2AliSwissprot,112 unipCov2AliSwissprot,132 unipCov2AliSwissprot,143 unipCov2Chain,297 unipCov2Chain,338 unipCov2Chain,349 unipCov2DisulfBond,293 unipCov2DisulfBond,334 unipCov2DisulfBond,345 unipCov2Domain,292 unipCov2Domain,333 unipCov2Domain,344 unipCov2Interest,75 unipCov2LocCytopl,292 unipCov2LocCytopl,333 unipCov2LocCytopl,344 unipCov2LocExtra,292 unipCov2LocExtra,333 unipCov2LocExtra,344 unipCov2LocSignal,293 unipCov2LocSignal,334 unipCov2LocSignal,345 unipCov2LocTransMemb,293 unipCov2LocTransMemb,334 unipCov2LocTransMemb,345 unipCov2Modif,296 unipCov2Modif,337 unipCov2Modif,348 unipCov2Mut,293 unipCov2Mut,334 unipCov2Mut,345 unipCov2Other,293 unipCov2Other,334 unipCov2Other,345 unipCov2Repeat,291 unipCov2Repeat,332 unipCov2Repeat,343 unipCov2Struct,295 unipCov2Struct,336 unipCov2Struct,347 varskip,42 weizmanOrfs,91 full-length pyle,217 unipCov2AliSwissprot,6 vaccines,557 fullah multiz7way,947 strainCons119way,2325 strainCons44way,1920 fully IgG_Z-score-_COVID-19_patients,127 IgM_Z-score-_COVID-19_patients,127 Q0_tracks,36 Q1_tracks,38 Q2_tracks,38 Q3_tracks,38 bpmIggCovidSum,136 bpmIgmCovidSum,136 galaxyEna,38 galaxyEnaQ0Ba-1,34 galaxyEnaQ0Ba-1-1,34 galaxyEnaQ0Ba-1-1-11,34 galaxyEnaQ0Ba-1-17,34 galaxyEnaQ0Ba-2,34 galaxyEnaQ1Ay-4,34 galaxyEnaQ1Ay-4-2,34 galaxyEnaQ1Ay-4-2-2,34 galaxyEnaQ1Ay-43,34 galaxyEnaQ1Ba-1-17,34 galaxyEnaQ2Ay-120,34 galaxyEnaQ2Ay-122,34 galaxyEnaQ2Ay-4,34 galaxyEnaQ2Ay-5,34 galaxyEnaQ2Ay-6,34 galaxyEnaQ3Ay-4,34 galaxyEnaQ3Ay-5,34 galaxyEnaQ3Ay-9,34 galaxyEnaQ3B-1-1-7,34 galaxyEnaQ3B-1-617-2,34 pbm,136 pbmShanghai,193 sarsCov2PhyloPub,721 function kimTranscripts,121 phyloGenes,174 pond,290 strainCons119way,2148 strainCons44way,1743 transcriptome,113 functional PhyloCSF_smooth,21 PhyloCSF_smooth,796 PhyloCSFpower,36 PhyloCSFpower,773 cd8escape,171 multiz7way,108 pond,123 strainCons119way,457 strainCons44way,405 functionality articV4_1,34 funded resistPred,77 rfam,162 strainCons44way,2260 funding Q0_tracks,1148 Q1_tracks,1150 Q2_tracks,1150 Q3_tracks,1150 galaxyEna,1150 galaxyEnaQ0Ba-1,1146 galaxyEnaQ0Ba-1-1,1146 galaxyEnaQ0Ba-1-1-11,1146 galaxyEnaQ0Ba-1-17,1146 galaxyEnaQ0Ba-2,1146 galaxyEnaQ1Ay-4,1146 galaxyEnaQ1Ay-4-2,1146 galaxyEnaQ1Ay-4-2-2,1146 galaxyEnaQ1Ay-43,1146 galaxyEnaQ1Ba-1-17,1146 galaxyEnaQ2Ay-120,1146 galaxyEnaQ2Ay-122,1146 galaxyEnaQ2Ay-4,1146 galaxyEnaQ2Ay-5,1146 galaxyEnaQ2Ay-6,1146 galaxyEnaQ3Ay-4,1146 galaxyEnaQ3Ay-5,1146 galaxyEnaQ3Ay-9,1146 galaxyEnaQ3B-1-1-7,1146 galaxyEnaQ3B-1-617-2,1146 strainCons44way,2249 further Q0_tracks,665 Q1_tracks,667 Q2_tracks,667 Q3_tracks,667 galaxyEna,667 galaxyEnaQ0Ba-1,663 galaxyEnaQ0Ba-1-1,663 galaxyEnaQ0Ba-1-1-11,663 galaxyEnaQ0Ba-1-17,663 galaxyEnaQ0Ba-2,663 galaxyEnaQ1Ay-4,663 galaxyEnaQ1Ay-4-2,663 galaxyEnaQ1Ay-4-2-2,663 galaxyEnaQ1Ay-43,663 galaxyEnaQ1Ba-1-17,663 galaxyEnaQ2Ay-120,663 galaxyEnaQ2Ay-122,663 galaxyEnaQ2Ay-4,663 galaxyEnaQ2Ay-5,663 galaxyEnaQ2Ay-6,663 galaxyEnaQ3Ay-4,663 galaxyEnaQ3Ay-5,663 galaxyEnaQ3Ay-9,663 galaxyEnaQ3B-1-1-7,663 galaxyEnaQ3B-1-617-2,663 nextstrainFreq,319 nextstrainSamples,965 pyle,191 pyle,240 rosettaMhc,295 sarsCov2Phylo,915 sarsCov2PhyloPub,1021 furthermore augustusGene,64 fyfe contacts,35 contacts,401 g G_18Max,2 G_18Total,2 G_18Total,11 G_94Max,2 G_94Total,2 G_94Total,11 abEscape,864 bloomEscMabAvg,868 bloomEscMax,874 bloomEscSerumAvg,869 bloomEscTop,872 cpgIslandExt,51 cpgIslandExt,392 cpgIslandExt,597 cpgIslandExtUnmasked,54 cpgIslandExtUnmasked,395 cpgIslandExtUnmasked,600 cpgIslandSuper,51 cpgIslandSuper,392 cpgIslandSuper,597 escape,871 gc5BaseBw,20 mccoy,864 multiz7way,608 multiz7way,620 multiz7way,950 multiz7way,1039 pdb,140 problematicSites,548 pyle,315 rappuoli,871 sarsCov2Phylo,261 sarsCov2Phylo,264 sarsCov2Phylo,1059 sarsCov2PhyloPub,268 sarsCov2PhyloPub,271 sarsCov2PhyloPub,1179 simpleRepeat,75 strainCons119way,958 strainCons119way,970 strainCons119way,2328 strainCons119way,2417 strainCons44way,906 strainCons44way,918 strainCons44way,1923 strainCons44way,2012 treangen,242 variantMuts,677 variantMuts,708 variantMuts,1341 variantMuts,1488 g_18 G_18Max,10 g_94 G_94Max,10 g_bind_avg G_bind_avg,1 g_expr_avg G_expr_avg_Expression,1 ga multiz7way,985 strainCons119way,2363 strainCons44way,1958 galaxy Q0_tracks,1 Q0_tracks,185 Q0_tracks,831 Q0_tracks,982 Q0_tracks,989 Q0_tracks,1119 Q0_tracks,1163 Q1_tracks,1 Q1_tracks,187 Q1_tracks,833 Q1_tracks,984 Q1_tracks,991 Q1_tracks,1121 Q1_tracks,1165 Q2_tracks,1 Q2_tracks,187 Q2_tracks,833 Q2_tracks,984 Q2_tracks,991 Q2_tracks,1121 Q2_tracks,1165 Q3_tracks,1 Q3_tracks,187 Q3_tracks,833 Q3_tracks,984 Q3_tracks,991 Q3_tracks,1121 Q3_tracks,1165 galaxyEna,1 galaxyEna,187 galaxyEna,833 galaxyEna,984 galaxyEna,991 galaxyEna,1121 galaxyEna,1165 galaxyEnaQ0Ba-1,183 galaxyEnaQ0Ba-1,829 galaxyEnaQ0Ba-1,980 galaxyEnaQ0Ba-1,987 galaxyEnaQ0Ba-1,1117 galaxyEnaQ0Ba-1,1161 galaxyEnaQ0Ba-1-1,183 galaxyEnaQ0Ba-1-1,829 galaxyEnaQ0Ba-1-1,980 galaxyEnaQ0Ba-1-1,987 galaxyEnaQ0Ba-1-1,1117 galaxyEnaQ0Ba-1-1,1161 galaxyEnaQ0Ba-1-1-11,183 galaxyEnaQ0Ba-1-1-11,829 galaxyEnaQ0Ba-1-1-11,980 galaxyEnaQ0Ba-1-1-11,987 galaxyEnaQ0Ba-1-1-11,1117 galaxyEnaQ0Ba-1-1-11,1161 galaxyEnaQ0Ba-1-17,183 galaxyEnaQ0Ba-1-17,829 galaxyEnaQ0Ba-1-17,980 galaxyEnaQ0Ba-1-17,987 galaxyEnaQ0Ba-1-17,1117 galaxyEnaQ0Ba-1-17,1161 galaxyEnaQ0Ba-2,183 galaxyEnaQ0Ba-2,829 galaxyEnaQ0Ba-2,980 galaxyEnaQ0Ba-2,987 galaxyEnaQ0Ba-2,1117 galaxyEnaQ0Ba-2,1161 galaxyEnaQ1Ay-4,183 galaxyEnaQ1Ay-4,829 galaxyEnaQ1Ay-4,980 galaxyEnaQ1Ay-4,987 galaxyEnaQ1Ay-4,1117 galaxyEnaQ1Ay-4,1161 galaxyEnaQ1Ay-4-2,183 galaxyEnaQ1Ay-4-2,829 galaxyEnaQ1Ay-4-2,980 galaxyEnaQ1Ay-4-2,987 galaxyEnaQ1Ay-4-2,1117 galaxyEnaQ1Ay-4-2,1161 galaxyEnaQ1Ay-4-2-2,183 galaxyEnaQ1Ay-4-2-2,829 galaxyEnaQ1Ay-4-2-2,980 galaxyEnaQ1Ay-4-2-2,987 galaxyEnaQ1Ay-4-2-2,1117 galaxyEnaQ1Ay-4-2-2,1161 galaxyEnaQ1Ay-43,183 galaxyEnaQ1Ay-43,829 galaxyEnaQ1Ay-43,980 galaxyEnaQ1Ay-43,987 galaxyEnaQ1Ay-43,1117 galaxyEnaQ1Ay-43,1161 galaxyEnaQ1Ba-1-17,183 galaxyEnaQ1Ba-1-17,829 galaxyEnaQ1Ba-1-17,980 galaxyEnaQ1Ba-1-17,987 galaxyEnaQ1Ba-1-17,1117 galaxyEnaQ1Ba-1-17,1161 galaxyEnaQ2Ay-120,183 galaxyEnaQ2Ay-120,829 galaxyEnaQ2Ay-120,980 galaxyEnaQ2Ay-120,987 galaxyEnaQ2Ay-120,1117 galaxyEnaQ2Ay-120,1161 galaxyEnaQ2Ay-122,183 galaxyEnaQ2Ay-122,829 galaxyEnaQ2Ay-122,980 galaxyEnaQ2Ay-122,987 galaxyEnaQ2Ay-122,1117 galaxyEnaQ2Ay-122,1161 galaxyEnaQ2Ay-4,183 galaxyEnaQ2Ay-4,829 galaxyEnaQ2Ay-4,980 galaxyEnaQ2Ay-4,987 galaxyEnaQ2Ay-4,1117 galaxyEnaQ2Ay-4,1161 galaxyEnaQ2Ay-5,183 galaxyEnaQ2Ay-5,829 galaxyEnaQ2Ay-5,980 galaxyEnaQ2Ay-5,987 galaxyEnaQ2Ay-5,1117 galaxyEnaQ2Ay-5,1161 galaxyEnaQ2Ay-6,183 galaxyEnaQ2Ay-6,829 galaxyEnaQ2Ay-6,980 galaxyEnaQ2Ay-6,987 galaxyEnaQ2Ay-6,1117 galaxyEnaQ2Ay-6,1161 galaxyEnaQ3Ay-4,183 galaxyEnaQ3Ay-4,829 galaxyEnaQ3Ay-4,980 galaxyEnaQ3Ay-4,987 galaxyEnaQ3Ay-4,1117 galaxyEnaQ3Ay-4,1161 galaxyEnaQ3Ay-5,183 galaxyEnaQ3Ay-5,829 galaxyEnaQ3Ay-5,980 galaxyEnaQ3Ay-5,987 galaxyEnaQ3Ay-5,1117 galaxyEnaQ3Ay-5,1161 galaxyEnaQ3Ay-9,183 galaxyEnaQ3Ay-9,829 galaxyEnaQ3Ay-9,980 galaxyEnaQ3Ay-9,987 galaxyEnaQ3Ay-9,1117 galaxyEnaQ3Ay-9,1161 galaxyEnaQ3B-1-1-7,183 galaxyEnaQ3B-1-1-7,829 galaxyEnaQ3B-1-1-7,980 galaxyEnaQ3B-1-1-7,987 galaxyEnaQ3B-1-1-7,1117 galaxyEnaQ3B-1-1-7,1161 galaxyEnaQ3B-1-617-2,183 galaxyEnaQ3B-1-617-2,829 galaxyEnaQ3B-1-617-2,980 galaxyEnaQ3B-1-617-2,987 galaxyEnaQ3B-1-617-2,1117 galaxyEnaQ3B-1-617-2,1161 galaxyproject Q0_tracks,30 Q0_tracks,277 Q0_tracks,1169 Q1_tracks,32 Q1_tracks,279 Q1_tracks,1171 Q2_tracks,32 Q2_tracks,279 Q2_tracks,1171 Q3_tracks,32 Q3_tracks,279 Q3_tracks,1171 galaxyEna,4 galaxyEna,32 galaxyEna,279 galaxyEna,1171 galaxyEnaQ0Ba-1,28 galaxyEnaQ0Ba-1,275 galaxyEnaQ0Ba-1,1167 galaxyEnaQ0Ba-1-1,28 galaxyEnaQ0Ba-1-1,275 galaxyEnaQ0Ba-1-1,1167 galaxyEnaQ0Ba-1-1-11,28 galaxyEnaQ0Ba-1-1-11,275 galaxyEnaQ0Ba-1-1-11,1167 galaxyEnaQ0Ba-1-17,28 galaxyEnaQ0Ba-1-17,275 galaxyEnaQ0Ba-1-17,1167 galaxyEnaQ0Ba-2,28 galaxyEnaQ0Ba-2,275 galaxyEnaQ0Ba-2,1167 galaxyEnaQ1Ay-4,28 galaxyEnaQ1Ay-4,275 galaxyEnaQ1Ay-4,1167 galaxyEnaQ1Ay-4-2,28 galaxyEnaQ1Ay-4-2,275 galaxyEnaQ1Ay-4-2,1167 galaxyEnaQ1Ay-4-2-2,28 galaxyEnaQ1Ay-4-2-2,275 galaxyEnaQ1Ay-4-2-2,1167 galaxyEnaQ1Ay-43,28 galaxyEnaQ1Ay-43,275 galaxyEnaQ1Ay-43,1167 galaxyEnaQ1Ba-1-17,28 galaxyEnaQ1Ba-1-17,275 galaxyEnaQ1Ba-1-17,1167 galaxyEnaQ2Ay-120,28 galaxyEnaQ2Ay-120,275 galaxyEnaQ2Ay-120,1167 galaxyEnaQ2Ay-122,28 galaxyEnaQ2Ay-122,275 galaxyEnaQ2Ay-122,1167 galaxyEnaQ2Ay-4,28 galaxyEnaQ2Ay-4,275 galaxyEnaQ2Ay-4,1167 galaxyEnaQ2Ay-5,28 galaxyEnaQ2Ay-5,275 galaxyEnaQ2Ay-5,1167 galaxyEnaQ2Ay-6,28 galaxyEnaQ2Ay-6,275 galaxyEnaQ2Ay-6,1167 galaxyEnaQ3Ay-4,28 galaxyEnaQ3Ay-4,275 galaxyEnaQ3Ay-4,1167 galaxyEnaQ3Ay-5,28 galaxyEnaQ3Ay-5,275 galaxyEnaQ3Ay-5,1167 galaxyEnaQ3Ay-9,28 galaxyEnaQ3Ay-9,275 galaxyEnaQ3Ay-9,1167 galaxyEnaQ3B-1-1-7,28 galaxyEnaQ3B-1-1-7,275 galaxyEnaQ3B-1-1-7,1167 galaxyEnaQ3B-1-617-2,28 galaxyEnaQ3B-1-617-2,275 galaxyEnaQ3B-1-617-2,1167 galt multiz7way,908 strainCons119way,2286 strainCons44way,1881 gambiae augustusGene,219 gamma variantAaMutsV2_P_1,1 variantAaMutsV2_P_1,4 variantMuts,303 variantNucMutsV2_P_1,1 variantNucMutsV2_P_1,4 gangavarapu variantMuts,1466 gap PhyloCSF_smooth,533 PhyloCSFpower,548 gap,1 gap,2 gap,90 gap,101 gap,114 multiz7way,380 multiz7way,390 multiz7way,403 multiz7way,923 strainCons119way,722 strainCons119way,732 strainCons119way,745 strainCons119way,2301 strainCons44way,670 strainCons44way,680 strainCons44way,693 strainCons44way,1896 gap_extend_penalty multiz7way,604 strainCons119way,954 strainCons44way,902 gap_open_penalty multiz7way,602 strainCons119way,952 strainCons44way,900 gapless multiz7way,655 strainCons119way,1004 strainCons44way,952 gapped_threshold multiz7way,594 strainCons119way,944 strainCons44way,892 gaps PhyloCSF_smooth,519 PhyloCSFpower,534 gap,12 gap,42 gap,67 gap,120 gold,95 multiz7way,347 multiz7way,353 multiz7way,684 sarsCov2Phylo,638 sarsCov2PhyloPub,662 strainCons119way,393 strainCons119way,689 strainCons119way,695 strainCons119way,1033 strainCons44way,341 strainCons44way,637 strainCons44way,643 strainCons44way,981 gardiner-garden cpgIslandExt,376 cpgIslandExt,604 cpgIslandExtUnmasked,379 cpgIslandExtUnmasked,607 cpgIslandSuper,376 cpgIslandSuper,604 gary simpleRepeat,71 gasteiger unipCov2AliSwissprot,476 unipCov2Chain,705 unipCov2DisulfBond,701 unipCov2Domain,700 unipCov2Interest,359 unipCov2LocCytopl,700 unipCov2LocExtra,700 unipCov2LocSignal,701 unipCov2LocTransMemb,701 unipCov2Modif,704 unipCov2Mut,701 unipCov2Other,701 unipCov2Repeat,699 unipCov2Struct,703 gastroenteritis strainCons119way,1474 gates abEscape,337 bloomEscMabAvg,341 bloomEscMax,347 bloomEscSerumAvg,342 bloomEscTop,345 escape,344 mccoy,337 rappuoli,344 gattiker unipCov2AliSwissprot,472 unipCov2Chain,701 unipCov2DisulfBond,697 unipCov2Domain,696 unipCov2Interest,355 unipCov2LocCytopl,696 unipCov2LocExtra,696 unipCov2LocSignal,697 unipCov2LocTransMemb,697 unipCov2Modif,700 unipCov2Mut,697 unipCov2Other,697 unipCov2Repeat,695 unipCov2Struct,699 gaynor poranHla1,272 poranHla2,272 gbdb IgG_Z-score-_COVID-19_patients,372 IgM_Z-score-_COVID-19_patients,372 artic,155 articV4,155 articV4_1,168 bpmIggCovidSum,381 bpmIgmCovidSum,381 cas13Crispr,440 contacts,368 icshape,157 kimRnaMod,202 kimTranscripts,419 ncbiGeneBGP,136 ncbiProducts,152 nextstrainFreq,246 pbm,381 phyloGenes,416 poranHla1,229 poranHla2,229 rapid,309 swift,238 transcriptome,425 unipCov2AliSwissprot,366 unipCov2Chain,596 unipCov2DisulfBond,592 unipCov2Domain,591 unipCov2Interest,272 unipCov2LocCytopl,591 unipCov2LocExtra,591 unipCov2LocSignal,592 unipCov2LocTransMemb,592 unipCov2Modif,595 unipCov2Mut,592 unipCov2Other,592 unipCov2Repeat,590 unipCov2Struct,594 vaccines,270 vaccines,398 varskip,161 gc cas13Crispr,274 cpgIslandExt,262 cpgIslandExtUnmasked,265 cpgIslandSuper,262 gc5BaseBw,1 gc5BaseBw,3 gc5BaseBw,13 gc5BaseBw,30 gccdc1 strainCons119way,1393 gcf_009858895.2 ncbiGeneBGP,23 ncbiProducts,26 strainCons44way,57 gcf_009858895.2_asm985889v3 multiz7way,38 strainCons119way,62 geidelberg variantMuts,1334 gemmi contacts,158 genbank addgene,149 addgene,223 ncbiProducts,53 sarsCov2Phylo,597 sarsCov2PhyloPub,33 sarsCov2PhyloPub,624 sarsCov2PhyloPub,724 strainCons119way,103 unipCov2Chain,235 unipCov2DisulfBond,231 unipCov2Domain,230 unipCov2LocCytopl,230 unipCov2LocExtra,230 unipCov2LocSignal,231 unipCov2LocTransMemb,231 unipCov2Modif,234 unipCov2Mut,231 unipCov2Other,231 unipCov2Repeat,229 unipCov2Struct,233 gencode unipCov2AliSwissprot,157 unipCov2Chain,410 unipCov2DisulfBond,406 unipCov2Domain,405 unipCov2Interest,86 unipCov2LocCytopl,405 unipCov2LocExtra,405 unipCov2LocSignal,406 unipCov2LocTransMemb,406 unipCov2Modif,409 unipCov2Mut,406 unipCov2Other,406 unipCov2Repeat,404 unipCov2Struct,408 gene CHX_24hr_1,11 CHX_24hr_2,11 CHX_5hr_1,11 CHX_5hr_2,11 CHX_7hr_1,11 CHX_7hr_2,11 Calu3_07hpi,10 Calu3_07hpi,45 Harr_24hr_1,11 Harr_24hr_2,11 Harr_5hr_1,11 Harr_5hr_2,11 Harr_7hr_1,11 Harr_7hr_2,11 Kim_RNAs,16 Kim_TRS_sgmRNAs,19 Kim_non-TRS_sgmRNAs,19 LTM_24hr_1,11 LTM_24hr_2,11 LTM_5hr_1,11 LTM_5hr_2,11 LTM_7hr_1,11 LTM_7hr_2,11 ORFs,8 ORFs,43 PhyloCSF_smooth,791 PhyloCSFgenes,10 PhyloCSFpower,768 PhyloCSFrejected,12 TRS_sites,13 Vero6_05hpi,10 Vero6_05hpi,45 Vero6_24hpi,10 Vero6_24hpi,45 augustusGene,5 augustusGene,10 augustusGene,40 augustusGene,112 augustusGene,157 augustusGene,163 augustusGene,305 augustusGene,320 contacts,15 cpgIslandExt,145 cpgIslandExtUnmasked,148 cpgIslandSuper,145 genscan,4 genscan,8 genscan,55 genscan,72 genscan,111 genscan,117 genscan,214 gordon2,13 kimMgiNc5p,13 kimNp,16 kimNp5pBreak,10 kimNpLdr3pBreak,10 kimNpNc3pBrk,10 kimRnaMod,24 kimTranscripts,16 mRNA-seq_24hr_1,11 mRNA-seq_24hr_2,11 mRNA-seq_5hr_1,11 mRNA-seq_5hr_2,11 mRNA-seq_7hr_1,11 mRNA-seq_7hr_2,11 mRNAs,14 multiz7way,456 ncbiGeneBGP,9 ncbiGeneBGP,14 ncbiProducts,11 nextstrainGene,10 nextstrainGene,84 nextstrainSamples,144 pdb,11 phyloGenes,10 phyloGenes,44 phyloGenes,153 phyloGenes,595 pond,208 primers,154 primers,179 sarsCov2Phylo,427 sarsCov2Phylo,434 sarsCov2Phylo,450 sarsCov2PhyloPub,456 sarsCov2PhyloPub,463 sarsCov2PhyloPub,479 strainCons119way,806 strainCons119way,1751 strainCons44way,754 strainCons44way,1346 transcriptome,8 weizmanOrfs,16 weizmanOrfs,51 gene-rich gc5BaseBw,36 genepredtomafframes multiz7way,898 strainCons119way,2276 strainCons44way,1871 general strainCons119way,1920 strainCons44way,1515 generality cas13Crispr,144 cas13Crispr,163 generally unipCov2Chain,133 unipCov2DisulfBond,129 unipCov2Domain,128 unipCov2LocCytopl,128 unipCov2LocExtra,128 unipCov2LocSignal,129 unipCov2LocTransMemb,129 unipCov2Modif,132 unipCov2Mut,129 unipCov2Other,129 unipCov2Repeat,127 unipCov2Struct,131 generate pond,196 pond,217 rapid,74 rapid,93 transcriptome,159 generated Starr_Bloom,149 Starr_Bloom_bind,143 abEscape,173 bloomEscMabAvg,177 bloomEscMax,183 bloomEscSerumAvg,178 bloomEscTop,181 cas13Crispr,50 cpgIslandExt,588 cpgIslandExtUnmasked,591 cpgIslandSuper,588 escape,180 kimTranscripts,242 kimTranscripts,283 kimTranscripts,311 mccoy,173 multiz7way,43 multiz7way,195 multiz7way,217 multiz7way,578 nextstrainParsimony,285 rappuoli,180 rfam,43 rosettaMhc,260 rosettaMhc,373 sarsCov2PhyloPub,949 strainCons119way,136 strainCons119way,544 strainCons119way,566 strainCons119way,928 strainCons119way,1715 strainCons119way,1870 strainCons119way,2092 strainCons44way,84 strainCons44way,492 strainCons44way,514 strainCons44way,876 strainCons44way,1310 strainCons44way,1465 strainCons44way,1687 transcriptome,171 transcriptome,283 generates Q0_tracks,894 Q1_tracks,896 Q2_tracks,896 Q3_tracks,896 galaxyEna,896 galaxyEnaQ0Ba-1,892 galaxyEnaQ0Ba-1-1,892 galaxyEnaQ0Ba-1-1-11,892 galaxyEnaQ0Ba-1-17,892 galaxyEnaQ0Ba-2,892 galaxyEnaQ1Ay-4,892 galaxyEnaQ1Ay-4-2,892 galaxyEnaQ1Ay-4-2-2,892 galaxyEnaQ1Ay-43,892 galaxyEnaQ1Ba-1-17,892 galaxyEnaQ2Ay-120,892 galaxyEnaQ2Ay-122,892 galaxyEnaQ2Ay-4,892 galaxyEnaQ2Ay-5,892 galaxyEnaQ2Ay-6,892 galaxyEnaQ3Ay-4,892 galaxyEnaQ3Ay-5,892 galaxyEnaQ3Ay-9,892 galaxyEnaQ3B-1-1-7,892 galaxyEnaQ3B-1-617-2,892 kimTranscripts,40 transcriptome,32 generating augustusGene,189 generation Q0_tracks,124 Q0_tracks,209 Q0_tracks,218 Q1_tracks,126 Q1_tracks,211 Q1_tracks,220 Q2_tracks,126 Q2_tracks,211 Q2_tracks,220 Q3_tracks,126 Q3_tracks,211 Q3_tracks,220 galaxyEna,126 galaxyEna,211 galaxyEna,220 galaxyEnaQ0Ba-1,122 galaxyEnaQ0Ba-1,207 galaxyEnaQ0Ba-1,216 galaxyEnaQ0Ba-1-1,122 galaxyEnaQ0Ba-1-1,207 galaxyEnaQ0Ba-1-1,216 galaxyEnaQ0Ba-1-1-11,122 galaxyEnaQ0Ba-1-1-11,207 galaxyEnaQ0Ba-1-1-11,216 galaxyEnaQ0Ba-1-17,122 galaxyEnaQ0Ba-1-17,207 galaxyEnaQ0Ba-1-17,216 galaxyEnaQ0Ba-2,122 galaxyEnaQ0Ba-2,207 galaxyEnaQ0Ba-2,216 galaxyEnaQ1Ay-4,122 galaxyEnaQ1Ay-4,207 galaxyEnaQ1Ay-4,216 galaxyEnaQ1Ay-4-2,122 galaxyEnaQ1Ay-4-2,207 galaxyEnaQ1Ay-4-2,216 galaxyEnaQ1Ay-4-2-2,122 galaxyEnaQ1Ay-4-2-2,207 galaxyEnaQ1Ay-4-2-2,216 galaxyEnaQ1Ay-43,122 galaxyEnaQ1Ay-43,207 galaxyEnaQ1Ay-43,216 galaxyEnaQ1Ba-1-17,122 galaxyEnaQ1Ba-1-17,207 galaxyEnaQ1Ba-1-17,216 galaxyEnaQ2Ay-120,122 galaxyEnaQ2Ay-120,207 galaxyEnaQ2Ay-120,216 galaxyEnaQ2Ay-122,122 galaxyEnaQ2Ay-122,207 galaxyEnaQ2Ay-122,216 galaxyEnaQ2Ay-4,122 galaxyEnaQ2Ay-4,207 galaxyEnaQ2Ay-4,216 galaxyEnaQ2Ay-5,122 galaxyEnaQ2Ay-5,207 galaxyEnaQ2Ay-5,216 galaxyEnaQ2Ay-6,122 galaxyEnaQ2Ay-6,207 galaxyEnaQ2Ay-6,216 galaxyEnaQ3Ay-4,122 galaxyEnaQ3Ay-4,207 galaxyEnaQ3Ay-4,216 galaxyEnaQ3Ay-5,122 galaxyEnaQ3Ay-5,207 galaxyEnaQ3Ay-5,216 galaxyEnaQ3Ay-9,122 galaxyEnaQ3Ay-9,207 galaxyEnaQ3Ay-9,216 galaxyEnaQ3B-1-1-7,122 galaxyEnaQ3B-1-1-7,207 galaxyEnaQ3B-1-1-7,216 galaxyEnaQ3B-1-617-2,122 galaxyEnaQ3B-1-617-2,207 galaxyEnaQ3B-1-617-2,216 generator multiz7way,905 strainCons119way,2283 strainCons44way,1878 generators nextstrainFreq,293 nextstrainSamples,945 sarsCov2Phylo,895 sarsCov2PhyloPub,1001 generous Q0_tracks,1145 Q1_tracks,1147 Q2_tracks,1147 Q3_tracks,1147 galaxyEna,1147 galaxyEnaQ0Ba-1,1143 galaxyEnaQ0Ba-1-1,1143 galaxyEnaQ0Ba-1-1-11,1143 galaxyEnaQ0Ba-1-17,1143 galaxyEnaQ0Ba-2,1143 galaxyEnaQ1Ay-4,1143 galaxyEnaQ1Ay-4-2,1143 galaxyEnaQ1Ay-4-2-2,1143 galaxyEnaQ1Ay-43,1143 galaxyEnaQ1Ba-1-17,1143 galaxyEnaQ2Ay-120,1143 galaxyEnaQ2Ay-122,1143 galaxyEnaQ2Ay-4,1143 galaxyEnaQ2Ay-5,1143 galaxyEnaQ2Ay-6,1143 galaxyEnaQ3Ay-4,1143 galaxyEnaQ3Ay-5,1143 galaxyEnaQ3Ay-9,1143 galaxyEnaQ3B-1-1-7,1143 galaxyEnaQ3B-1-617-2,1143 strainCons44way,2262 genes CHX_24hr_1,9 CHX_24hr_2,9 CHX_5hr_1,9 CHX_5hr_2,9 CHX_7hr_1,9 CHX_7hr_2,9 Calu3_07hpi,8 Calu3_07hpi,282 Harr_24hr_1,9 Harr_24hr_2,9 Harr_5hr_1,9 Harr_5hr_2,9 Harr_7hr_1,9 Harr_7hr_2,9 Kim_RNAs,14 Kim_TRS_sgmRNAs,17 Kim_non-TRS_sgmRNAs,17 LTM_24hr_1,9 LTM_24hr_2,9 LTM_5hr_1,9 LTM_5hr_2,9 LTM_7hr_1,9 LTM_7hr_2,9 ORFs,6 ORFs,280 PhyloCSF_smooth,759 PhyloCSFgenes,2 PhyloCSFgenes,4 PhyloCSFgenes,7 PhyloCSFgenes,8 PhyloCSFpower,738 PhyloCSFrejected,3 PhyloCSFrejected,4 PhyloCSFrejected,8 PhyloCSFrejected,10 TRS_sites,11 Vero6_05hpi,8 Vero6_05hpi,282 Vero6_24hpi,8 Vero6_24hpi,282 augustusGene,8 augustusGene,44 contacts,13 cpgIslandExt,20 cpgIslandExt,23 cpgIslandExtUnmasked,23 cpgIslandExtUnmasked,26 cpgIslandSuper,20 cpgIslandSuper,23 genscan,2 genscan,6 genscan,59 gordon2,11 kimMgiNc5p,11 kimNp,14 kimNp5pBreak,8 kimNpLdr3pBreak,8 kimNpNc3pBrk,8 kimRnaMod,22 kimTranscripts,14 mRNA-seq_24hr_1,9 mRNA-seq_24hr_2,9 mRNA-seq_5hr_1,9 mRNA-seq_5hr_2,9 mRNA-seq_7hr_1,9 mRNA-seq_7hr_2,9 mRNAs,12 multiz7way,783 ncbiGeneBGP,2 ncbiGeneBGP,4 ncbiGeneBGP,7 ncbiProducts,9 nextstrainGene,2 nextstrainGene,3 nextstrainGene,8 nextstrainSamples,149 pdb,9 phyloGenes,2 phyloGenes,4 phyloGenes,7 phyloGenes,8 phyloGenes,19 phyloGenes,74 phyloGenes,80 phyloGenes,149 phyloGenes,168 phyloGenes,184 phyloGenes,481 simpleRepeat,41 strainCons119way,1655 strainCons44way,1250 transcriptome,6 weizmanOrfs,14 weizmanOrfs,288 genetic nextstrainParsimony,415 nextstrainSamples,892 problematicSites,308 sarsCov2Phylo,828 sarsCov2PhyloPub,911 variantMuts,1174 variantMuts,1359 genetics multiz7way,1114 strainCons119way,2492 strainCons44way,2087 genger cd8escape,201 genome IgG_Z-score-_COVID-19_patients,74 IgG_Z-score-_COVID-19_patients,308 IgM_Z-score-_COVID-19_patients,74 IgM_Z-score-_COVID-19_patients,308 PhyloCSF_smooth,217 PhyloCSF_smooth,770 PhyloCSFpower,232 PhyloCSFpower,749 Q0_tracks,64 Q0_tracks,256 Q0_tracks,656 Q0_tracks,1047 Q0_tracks,1186 Q1_tracks,66 Q1_tracks,258 Q1_tracks,658 Q1_tracks,1049 Q1_tracks,1188 Q2_tracks,66 Q2_tracks,258 Q2_tracks,658 Q2_tracks,1049 Q2_tracks,1188 Q3_tracks,66 Q3_tracks,258 Q3_tracks,658 Q3_tracks,1049 Q3_tracks,1188 addgene,9 addgene,113 artic,91 articV4,91 articV4_1,104 augustusGene,31 bpmIggCovidSum,83 bpmIggCovidSum,317 bpmIgmCovidSum,83 bpmIgmCovidSum,317 cas13Crispr,39 cas13Crispr,376 contacts,102 contacts,130 contacts,142 contacts,304 cpgIslandExt,164 cpgIslandExt,302 cpgIslandExtUnmasked,167 cpgIslandExtUnmasked,305 cpgIslandSuper,164 cpgIslandSuper,302 crisprDet,71 galaxyEna,66 galaxyEna,258 galaxyEna,658 galaxyEna,1049 galaxyEna,1188 galaxyEnaQ0Ba-1,62 galaxyEnaQ0Ba-1,254 galaxyEnaQ0Ba-1,654 galaxyEnaQ0Ba-1,1045 galaxyEnaQ0Ba-1,1184 galaxyEnaQ0Ba-1-1,62 galaxyEnaQ0Ba-1-1,254 galaxyEnaQ0Ba-1-1,654 galaxyEnaQ0Ba-1-1,1045 galaxyEnaQ0Ba-1-1,1184 galaxyEnaQ0Ba-1-1-11,62 galaxyEnaQ0Ba-1-1-11,254 galaxyEnaQ0Ba-1-1-11,654 galaxyEnaQ0Ba-1-1-11,1045 galaxyEnaQ0Ba-1-1-11,1184 galaxyEnaQ0Ba-1-17,62 galaxyEnaQ0Ba-1-17,254 galaxyEnaQ0Ba-1-17,654 galaxyEnaQ0Ba-1-17,1045 galaxyEnaQ0Ba-1-17,1184 galaxyEnaQ0Ba-2,62 galaxyEnaQ0Ba-2,254 galaxyEnaQ0Ba-2,654 galaxyEnaQ0Ba-2,1045 galaxyEnaQ0Ba-2,1184 galaxyEnaQ1Ay-4,62 galaxyEnaQ1Ay-4,254 galaxyEnaQ1Ay-4,654 galaxyEnaQ1Ay-4,1045 galaxyEnaQ1Ay-4,1184 galaxyEnaQ1Ay-4-2,62 galaxyEnaQ1Ay-4-2,254 galaxyEnaQ1Ay-4-2,654 galaxyEnaQ1Ay-4-2,1045 galaxyEnaQ1Ay-4-2,1184 galaxyEnaQ1Ay-4-2-2,62 galaxyEnaQ1Ay-4-2-2,254 galaxyEnaQ1Ay-4-2-2,654 galaxyEnaQ1Ay-4-2-2,1045 galaxyEnaQ1Ay-4-2-2,1184 galaxyEnaQ1Ay-43,62 galaxyEnaQ1Ay-43,254 galaxyEnaQ1Ay-43,654 galaxyEnaQ1Ay-43,1045 galaxyEnaQ1Ay-43,1184 galaxyEnaQ1Ba-1-17,62 galaxyEnaQ1Ba-1-17,254 galaxyEnaQ1Ba-1-17,654 galaxyEnaQ1Ba-1-17,1045 galaxyEnaQ1Ba-1-17,1184 galaxyEnaQ2Ay-120,62 galaxyEnaQ2Ay-120,254 galaxyEnaQ2Ay-120,654 galaxyEnaQ2Ay-120,1045 galaxyEnaQ2Ay-120,1184 galaxyEnaQ2Ay-122,62 galaxyEnaQ2Ay-122,254 galaxyEnaQ2Ay-122,654 galaxyEnaQ2Ay-122,1045 galaxyEnaQ2Ay-122,1184 galaxyEnaQ2Ay-4,62 galaxyEnaQ2Ay-4,254 galaxyEnaQ2Ay-4,654 galaxyEnaQ2Ay-4,1045 galaxyEnaQ2Ay-4,1184 galaxyEnaQ2Ay-5,62 galaxyEnaQ2Ay-5,254 galaxyEnaQ2Ay-5,654 galaxyEnaQ2Ay-5,1045 galaxyEnaQ2Ay-5,1184 galaxyEnaQ2Ay-6,62 galaxyEnaQ2Ay-6,254 galaxyEnaQ2Ay-6,654 galaxyEnaQ2Ay-6,1045 galaxyEnaQ2Ay-6,1184 galaxyEnaQ3Ay-4,62 galaxyEnaQ3Ay-4,254 galaxyEnaQ3Ay-4,654 galaxyEnaQ3Ay-4,1045 galaxyEnaQ3Ay-4,1184 galaxyEnaQ3Ay-5,62 galaxyEnaQ3Ay-5,254 galaxyEnaQ3Ay-5,654 galaxyEnaQ3Ay-5,1045 galaxyEnaQ3Ay-5,1184 galaxyEnaQ3Ay-9,62 galaxyEnaQ3Ay-9,254 galaxyEnaQ3Ay-9,654 galaxyEnaQ3Ay-9,1045 galaxyEnaQ3Ay-9,1184 galaxyEnaQ3B-1-1-7,62 galaxyEnaQ3B-1-1-7,254 galaxyEnaQ3B-1-1-7,654 galaxyEnaQ3B-1-1-7,1045 galaxyEnaQ3B-1-1-7,1184 galaxyEnaQ3B-1-617-2,62 galaxyEnaQ3B-1-617-2,254 galaxyEnaQ3B-1-617-2,654 galaxyEnaQ3B-1-617-2,1045 galaxyEnaQ3B-1-617-2,1184 gap,18 gap,20 gold,20 gold,22 gordon2,88 icshape,45 icshape,125 icshape,217 kimIvtCov,77 kimRnaMod,60 kimRnaMod,138 kimTranscripts,355 microdel,93 multiz7way,36 multiz7way,97 multiz7way,247 multiz7way,478 multiz7way,682 multiz7way,1025 multiz7way,1068 multiz7way,1198 multiz7way,1265 ncbiGeneBGP,24 ncbiGeneBGP,60 ncbiProducts,27 ncbiProducts,76 nextstrainClade,149 nextstrainClade,239 nextstrainFreq,61 nextstrainFreq,72 nextstrainFreq,125 nextstrainFreq,214 nextstrainFreq,374 nextstrainGene,59 nextstrainGene,65 nextstrainGene,68 nextstrainGene,188 nextstrainParsimony,78 nextstrainParsimony,89 nextstrainSamples,74 nextstrainSamples,122 nextstrainSamples,400 nextstrainSamples,736 pbm,83 pbm,317 pbmShanghai,351 pbmShanghai,434 pdb,38 phyloGenes,352 phyloGenes,542 phyloGenes,576 poranHla1,165 poranHla2,165 problematicSites,31 problematicSites,62 problematicSites,92 problematicSites,480 pyle,35 pyle,220 pyle,296 pyle,329 rapid,39 rapid,245 recomb,122 recomb,252 resist,72 resist,104 resistPred,182 resistPred,196 rfam,11 rnaStructRangan,111 sarsCov2Phylo,29 sarsCov2Phylo,94 sarsCov2Phylo,404 sarsCov2Phylo,589 sarsCov2Phylo,593 sarsCov2PhyloPub,27 sarsCov2PhyloPub,107 sarsCov2PhyloPub,433 sarsCov2PhyloPub,616 sarsCov2PhyloPub,620 sarsCov2PhyloPub,784 sarsCov2PhyloPub,788 spikeMuts,313 strainCons119way,59 strainCons119way,446 strainCons119way,596 strainCons119way,828 strainCons119way,1031 strainCons119way,1814 strainCons119way,1911 strainCons119way,2403 strainCons119way,2446 strainCons119way,2576 strainCons119way,2643 strainCons44way,55 strainCons44way,394 strainCons44way,544 strainCons44way,776 strainCons44way,979 strainCons44way,1409 strainCons44way,1506 strainCons44way,1998 strainCons44way,2041 strainCons44way,2171 strainCons44way,2238 strainCons44way,2257 swift,52 swift,79 swift,90 swift,174 targets,142 targets,197 transcriptome,135 transcriptome,361 treangen,57 ucscToINSDC,18 ucscToRefSeq,13 unipCov2AliSwissprot,10 unipCov2AliSwissprot,42 unipCov2AliSwissprot,56 unipCov2AliSwissprot,175 unipCov2AliSwissprot,198 unipCov2AliSwissprot,237 unipCov2AliSwissprot,243 unipCov2AliSwissprot,281 unipCov2Chain,71 unipCov2Chain,93 unipCov2Chain,428 unipCov2Chain,451 unipCov2Chain,473 unipCov2Chain,511 unipCov2DisulfBond,67 unipCov2DisulfBond,89 unipCov2DisulfBond,424 unipCov2DisulfBond,447 unipCov2DisulfBond,469 unipCov2DisulfBond,507 unipCov2Domain,66 unipCov2Domain,88 unipCov2Domain,423 unipCov2Domain,446 unipCov2Domain,468 unipCov2Domain,506 unipCov2Interest,104 unipCov2Interest,127 unipCov2Interest,149 unipCov2Interest,187 unipCov2LocCytopl,66 unipCov2LocCytopl,88 unipCov2LocCytopl,423 unipCov2LocCytopl,446 unipCov2LocCytopl,468 unipCov2LocCytopl,506 unipCov2LocExtra,66 unipCov2LocExtra,88 unipCov2LocExtra,423 unipCov2LocExtra,446 unipCov2LocExtra,468 unipCov2LocExtra,506 unipCov2LocSignal,67 unipCov2LocSignal,89 unipCov2LocSignal,424 unipCov2LocSignal,447 unipCov2LocSignal,469 unipCov2LocSignal,507 unipCov2LocTransMemb,67 unipCov2LocTransMemb,89 unipCov2LocTransMemb,424 unipCov2LocTransMemb,447 unipCov2LocTransMemb,469 unipCov2LocTransMemb,507 unipCov2Modif,70 unipCov2Modif,92 unipCov2Modif,427 unipCov2Modif,450 unipCov2Modif,472 unipCov2Modif,510 unipCov2Mut,67 unipCov2Mut,89 unipCov2Mut,424 unipCov2Mut,447 unipCov2Mut,469 unipCov2Mut,507 unipCov2Other,67 unipCov2Other,89 unipCov2Other,424 unipCov2Other,447 unipCov2Other,469 unipCov2Other,507 unipCov2Repeat,65 unipCov2Repeat,87 unipCov2Repeat,422 unipCov2Repeat,445 unipCov2Repeat,467 unipCov2Repeat,505 unipCov2Struct,69 unipCov2Struct,91 unipCov2Struct,426 unipCov2Struct,449 unipCov2Struct,471 unipCov2Struct,509 vaccines,26 vaccines,126 vaccines,158 vaccines,233 vaccines,390 vaccines,584 variantMuts,754 variantMuts,785 variantMuts,838 variantMuts,1015 varskip,97 genome-wide pyle,154 genome-www publicAnnots,80 genomes PhyloCSF_smooth,25 PhyloCSF_smooth,410 PhyloCSF_smooth,428 PhyloCSFpower,40 PhyloCSFpower,425 PhyloCSFpower,443 cas13Crispr,176 cas13Crispr,210 cas13Crispr,217 cas13Crispr,252 cas13Crispr,269 cas13Crispr,289 cd8escape,94 cpgIslandExt,612 cpgIslandExtUnmasked,615 cpgIslandSuper,612 kimIvtCov,41 multiz7way,1067 multiz7way,1148 nextstrainClade,123 nextstrainClade,227 nextstrainFreq,135 nextstrainFreq,360 nextstrainGene,93 nextstrainGene,176 nextstrainParsimony,290 nextstrainParsimony,439 nextstrainSamples,603 nextstrainSamples,916 phyloGenes,605 recomb,128 strainCons119way,75 strainCons119way,82 strainCons119way,2445 strainCons119way,2526 strainCons44way,2040 strainCons44way,2121 variantMuts,807 windowmaskerSdust,105 genomic IgG_Z-score-_COVID-19_patients,80 IgM_Z-score-_COVID-19_patients,80 Q0_tracks,242 Q1_tracks,244 Q2_tracks,244 Q3_tracks,244 artic,32 articV4,35 articV4_1,46 bpmIggCovidSum,89 bpmIgmCovidSum,89 contacts,41 galaxyEna,244 galaxyEnaQ0Ba-1,240 galaxyEnaQ0Ba-1-1,240 galaxyEnaQ0Ba-1-1-11,240 galaxyEnaQ0Ba-1-17,240 galaxyEnaQ0Ba-2,240 galaxyEnaQ1Ay-4,240 galaxyEnaQ1Ay-4-2,240 galaxyEnaQ1Ay-4-2-2,240 galaxyEnaQ1Ay-43,240 galaxyEnaQ1Ba-1-17,240 galaxyEnaQ2Ay-120,240 galaxyEnaQ2Ay-122,240 galaxyEnaQ2Ay-4,240 galaxyEnaQ2Ay-5,240 galaxyEnaQ2Ay-6,240 galaxyEnaQ3Ay-4,240 galaxyEnaQ3Ay-5,240 galaxyEnaQ3Ay-9,240 galaxyEnaQ3B-1-1-7,240 galaxyEnaQ3B-1-617-2,240 genscan,92 genscan,218 multiz7way,953 multiz7way,1191 multiz7way,1220 multiz7way,1236 pbm,89 pbmShanghai,146 pdb,63 pond,198 poranHla1,84 poranHla2,84 potPathoIndel,22 potPathoIndel,220 rapid,159 sarsCov2Phylo,806 sarsCov2Phylo,961 sarsCov2PhyloPub,1081 strainCons119way,2331 strainCons119way,2569 strainCons119way,2598 strainCons119way,2614 strainCons44way,1926 strainCons44way,2164 strainCons44way,2193 strainCons44way,2209 swift,96 swift,130 treangen,74 treangen,315 unipCov2AliSwissprot,28 unipCov2AliSwissprot,76 unipCov2Chain,27 unipCov2Chain,261 unipCov2DisulfBond,23 unipCov2DisulfBond,257 unipCov2Domain,22 unipCov2Domain,256 unipCov2Interest,29 unipCov2Interest,48 unipCov2LocCytopl,22 unipCov2LocCytopl,256 unipCov2LocExtra,22 unipCov2LocExtra,256 unipCov2LocSignal,23 unipCov2LocSignal,257 unipCov2LocTransMemb,23 unipCov2LocTransMemb,257 unipCov2Modif,26 unipCov2Modif,260 unipCov2Mut,23 unipCov2Mut,257 unipCov2Other,23 unipCov2Other,257 unipCov2Repeat,21 unipCov2Repeat,255 unipCov2Struct,25 unipCov2Struct,259 variantMuts,771 variantMuts,1268 variantMuts,1302 variantMuts,1418 varskip,32 windowmaskerSdust,3 genomics PhyloCSF_minus_1,9 PhyloCSF_minus_2,9 PhyloCSF_minus_3,9 PhyloCSF_plus_1,10 PhyloCSF_plus_2,10 PhyloCSF_plus_3,10 PhyloCSF_smooth,4 PhyloCSF_smooth,712 PhyloCSF_smooth,789 PhyloCSFpower,16 PhyloCSFpower,683 PhyloCSFpower,766 Q0_tracks,1215 Q1_tracks,1217 Q2_tracks,1217 Q3_tracks,1217 galaxyEna,1217 galaxyEnaQ0Ba-1,1213 galaxyEnaQ0Ba-1-1,1213 galaxyEnaQ0Ba-1-1-11,1213 galaxyEnaQ0Ba-1-17,1213 galaxyEnaQ0Ba-2,1213 galaxyEnaQ1Ay-4,1213 galaxyEnaQ1Ay-4-2,1213 galaxyEnaQ1Ay-4-2-2,1213 galaxyEnaQ1Ay-43,1213 galaxyEnaQ1Ba-1-17,1213 galaxyEnaQ2Ay-120,1213 galaxyEnaQ2Ay-122,1213 galaxyEnaQ2Ay-4,1213 galaxyEnaQ2Ay-5,1213 galaxyEnaQ2Ay-6,1213 galaxyEnaQ3Ay-4,1213 galaxyEnaQ3Ay-5,1213 galaxyEnaQ3Ay-9,1213 galaxyEnaQ3B-1-1-7,1213 galaxyEnaQ3B-1-617-2,1213 multiz7way,14 multiz7way,56 phyloGenes,35 phyloGenes,504 potPathoIndel,140 sarsCov2Phylo,1165 sarsCov2PhyloPub,1298 strainCons119way,17 strainCons119way,149 strainCons119wayViewalign,16 strainCons119wayViewphastcons,17 strainCons119wayViewphyloP,17 strainCons44way,14 strainCons44way,97 strainCons44way,2270 strainCons44wayViewalign,13 strainCons44wayViewphastcons,15 strainCons44wayViewphyloP,14 strainName119way,17 strainName44way,22 strainPhastCons119way,10 strainPhastCons44way,12 strainPhyloP119way,10 strainPhyloP44way,12 genotype nextstrainSamples,855 genotypes nextstrainParsimony,124 nextstrainParsimony,278 sarsCov2PhyloPub,823 genscan genscan,1 genscan,3 genscan,17 genscan,136 genscan,177 geographic spikeMuts,160 spikeMuts,168 variantMuts,79 geographical sarsCov2Phylo,995 sarsCov2PhyloPub,1115 ger strainCons119way,1324 germany primers,205 gertz windowmaskerSdust,92 get PhyloCSF_smooth,253 PhyloCSF_smooth,287 PhyloCSFpower,268 PhyloCSFpower,302 Q0_tracks,810 Q0_tracks,1050 Q1_tracks,812 Q1_tracks,1052 Q2_tracks,812 Q2_tracks,1052 Q3_tracks,812 Q3_tracks,1052 galaxyEna,812 galaxyEna,1052 galaxyEnaQ0Ba-1,808 galaxyEnaQ0Ba-1,1048 galaxyEnaQ0Ba-1-1,808 galaxyEnaQ0Ba-1-1,1048 galaxyEnaQ0Ba-1-1-11,808 galaxyEnaQ0Ba-1-1-11,1048 galaxyEnaQ0Ba-1-17,808 galaxyEnaQ0Ba-1-17,1048 galaxyEnaQ0Ba-2,808 galaxyEnaQ0Ba-2,1048 galaxyEnaQ1Ay-4,808 galaxyEnaQ1Ay-4,1048 galaxyEnaQ1Ay-4-2,808 galaxyEnaQ1Ay-4-2,1048 galaxyEnaQ1Ay-4-2-2,808 galaxyEnaQ1Ay-4-2-2,1048 galaxyEnaQ1Ay-43,808 galaxyEnaQ1Ay-43,1048 galaxyEnaQ1Ba-1-17,808 galaxyEnaQ1Ba-1-17,1048 galaxyEnaQ2Ay-120,808 galaxyEnaQ2Ay-120,1048 galaxyEnaQ2Ay-122,808 galaxyEnaQ2Ay-122,1048 galaxyEnaQ2Ay-4,808 galaxyEnaQ2Ay-4,1048 galaxyEnaQ2Ay-5,808 galaxyEnaQ2Ay-5,1048 galaxyEnaQ2Ay-6,808 galaxyEnaQ2Ay-6,1048 galaxyEnaQ3Ay-4,808 galaxyEnaQ3Ay-4,1048 galaxyEnaQ3Ay-5,808 galaxyEnaQ3Ay-5,1048 galaxyEnaQ3Ay-9,808 galaxyEnaQ3Ay-9,1048 galaxyEnaQ3B-1-1-7,808 galaxyEnaQ3B-1-1-7,1048 galaxyEnaQ3B-1-617-2,808 galaxyEnaQ3B-1-617-2,1048 nextstrainSamples,808 getdata icshape,123 nextstrainFreq,212 gets Q0_tracks,519 Q0_tracks,835 Q0_tracks,886 Q1_tracks,521 Q1_tracks,837 Q1_tracks,888 Q2_tracks,521 Q2_tracks,837 Q2_tracks,888 Q3_tracks,521 Q3_tracks,837 Q3_tracks,888 galaxyEna,521 galaxyEna,837 galaxyEna,888 galaxyEnaQ0Ba-1,517 galaxyEnaQ0Ba-1,833 galaxyEnaQ0Ba-1,884 galaxyEnaQ0Ba-1-1,517 galaxyEnaQ0Ba-1-1,833 galaxyEnaQ0Ba-1-1,884 galaxyEnaQ0Ba-1-1-11,517 galaxyEnaQ0Ba-1-1-11,833 galaxyEnaQ0Ba-1-1-11,884 galaxyEnaQ0Ba-1-17,517 galaxyEnaQ0Ba-1-17,833 galaxyEnaQ0Ba-1-17,884 galaxyEnaQ0Ba-2,517 galaxyEnaQ0Ba-2,833 galaxyEnaQ0Ba-2,884 galaxyEnaQ1Ay-4,517 galaxyEnaQ1Ay-4,833 galaxyEnaQ1Ay-4,884 galaxyEnaQ1Ay-4-2,517 galaxyEnaQ1Ay-4-2,833 galaxyEnaQ1Ay-4-2,884 galaxyEnaQ1Ay-4-2-2,517 galaxyEnaQ1Ay-4-2-2,833 galaxyEnaQ1Ay-4-2-2,884 galaxyEnaQ1Ay-43,517 galaxyEnaQ1Ay-43,833 galaxyEnaQ1Ay-43,884 galaxyEnaQ1Ba-1-17,517 galaxyEnaQ1Ba-1-17,833 galaxyEnaQ1Ba-1-17,884 galaxyEnaQ2Ay-120,517 galaxyEnaQ2Ay-120,833 galaxyEnaQ2Ay-120,884 galaxyEnaQ2Ay-122,517 galaxyEnaQ2Ay-122,833 galaxyEnaQ2Ay-122,884 galaxyEnaQ2Ay-4,517 galaxyEnaQ2Ay-4,833 galaxyEnaQ2Ay-4,884 galaxyEnaQ2Ay-5,517 galaxyEnaQ2Ay-5,833 galaxyEnaQ2Ay-5,884 galaxyEnaQ2Ay-6,517 galaxyEnaQ2Ay-6,833 galaxyEnaQ2Ay-6,884 galaxyEnaQ3Ay-4,517 galaxyEnaQ3Ay-4,833 galaxyEnaQ3Ay-4,884 galaxyEnaQ3Ay-5,517 galaxyEnaQ3Ay-5,833 galaxyEnaQ3Ay-5,884 galaxyEnaQ3Ay-9,517 galaxyEnaQ3Ay-9,833 galaxyEnaQ3Ay-9,884 galaxyEnaQ3B-1-1-7,517 galaxyEnaQ3B-1-1-7,833 galaxyEnaQ3B-1-1-7,884 galaxyEnaQ3B-1-617-2,517 galaxyEnaQ3B-1-617-2,833 galaxyEnaQ3B-1-617-2,884 gfclient vaccines,257 gh sarsCov2Phylo,278 sarsCov2Phylo,294 sarsCov2Phylo,296 sarsCov2PhyloPub,285 sarsCov2PhyloPub,301 sarsCov2PhyloPub,303 variantMuts,289 variantMuts,646 variantMuts,661 variantMuts,692 giessen rfam,140 gilchuk abEscape,729 bloomEscMabAvg,733 bloomEscMax,739 bloomEscSerumAvg,734 bloomEscTop,737 escape,736 mccoy,729 rappuoli,736 gilliland pdb,139 ginger variantMuts,1483 gire multiz7way,931 strainCons119way,2309 strainCons44way,1904 girija cas13Crispr,493 gisaid microdel,4 microdel,24 microdel,45 microdel,53 microdel,61 microdel,76 microdel,200 nextstrainClade,125 nextstrainClade,230 nextstrainFreq,66 nextstrainFreq,137 nextstrainFreq,363 nextstrainGene,95 nextstrainGene,179 nextstrainParsimony,83 nextstrainParsimony,292 nextstrainParsimony,442 nextstrainSamples,6 nextstrainSamples,107 nextstrainSamples,167 nextstrainSamples,481 nextstrainSamples,605 nextstrainSamples,633 nextstrainSamples,674 nextstrainSamples,678 nextstrainSamples,734 nextstrainSamples,745 nextstrainSamples,774 nextstrainSamples,919 nextstrainSamples19A,10 nextstrainSamples19B,10 nextstrainSamples20A,10 nextstrainSamples20B,10 nextstrainSamples20C,10 nextstrainSamples20D,10 nextstrainSamples20F,10 nextstrainSamples20G,10 nextstrainSamples21A_Delta,12 nextstrainSamples21B_Kappa,12 nextstrainSamples21D_Eta,12 nextstrainSamples21E_Theta,12 nextstrainSamples21F_Iota,12 nextstrainSamples21G_Lambda,12 nextstrainSamples21H_Mu,12 nextstrainSamples21I_Delta,12 nextstrainSamples21J_Delta,12 nextstrainSamplesAll,7 nextstrainSamplesRb,10 nextstrainSamplesViewAll,6 nextstrainSamplesViewNewClades,6 pond,86 problematicSites,223 resistPred,14 resistPred,129 sarsCov2Phylo,2 sarsCov2Phylo,13 sarsCov2Phylo,33 sarsCov2Phylo,136 sarsCov2Phylo,167 sarsCov2Phylo,259 sarsCov2Phylo,292 sarsCov2Phylo,511 sarsCov2Phylo,579 sarsCov2Phylo,599 sarsCov2Phylo,712 sarsCov2Phylo,744 sarsCov2Phylo,756 sarsCov2Phylo,811 sarsCov2Phylo,847 sarsCov2PhyloFull,8 sarsCov2PhyloMinAf001,14 sarsCov2PhyloMinAf01,14 sarsCov2PhyloPub,173 sarsCov2PhyloPub,266 sarsCov2PhyloPub,299 sarsCov2PhyloPub,604 sarsCov2PhyloPub,626 sarsCov2PhyloPub,1048 variantAaMutsV2_B_1_1_7,14 variantAaMutsV2_B_1_351,14 variantAaMutsV2_B_1_429,14 variantAaMutsV2_B_1_525,13 variantAaMutsV2_B_1_526,14 variantAaMutsV2_B_1_617_1,14 variantAaMutsV2_B_1_617_2,14 variantAaMutsV2_B_1_621,14 variantAaMutsV2_C_37,14 variantAaMutsV2_P_1,14 variantAaMuts_BA_2,11 variantAaMuts_BA_2_12_1,11 variantAaMuts_BA_2_75,12 variantAaMuts_BA_2_86,11 variantAaMuts_BA_4,12 variantAaMuts_BA_5,12 variantAaMuts_BQ_1,11 variantAaMuts_CH_1_1,11 variantAaMuts_EG_5_1,11 variantAaMuts_HK_3,11 variantAaMuts_JN_1,11 variantAaMuts_XBB,11 variantAaMuts_XBB_1_16,11 variantAaMuts_XBB_1_5,11 variantAaMuts_XBB_1_5_70,11 variantAaMuts_XBB_1_9,11 variantAaMuts_XBB_2_3,11 variantMuts,75 variantMuts,797 variantMuts,1442 variantNucMutsV2_B_1_1_7,13 variantNucMutsV2_B_1_351,13 variantNucMutsV2_B_1_429,13 variantNucMutsV2_B_1_525,12 variantNucMutsV2_B_1_526,13 variantNucMutsV2_B_1_617_1,13 variantNucMutsV2_B_1_617_2,13 variantNucMutsV2_B_1_621,13 variantNucMutsV2_C_37,13 variantNucMutsV2_P_1,13 variantNucMuts_BA_2,12 variantNucMuts_BA_2_12_1,12 variantNucMuts_BA_2_75,12 variantNucMuts_BA_2_86,12 variantNucMuts_BA_4,13 variantNucMuts_BA_5,13 variantNucMuts_BQ_1,12 variantNucMuts_B_1_1_529,14 variantNucMuts_CH_1_1,12 variantNucMuts_EG_5_1,12 variantNucMuts_HK_3,12 variantNucMuts_JN_1,12 variantNucMuts_XBB,12 variantNucMuts_XBB_1_16,12 variantNucMuts_XBB_1_5,12 variantNucMuts_XBB_1_5_70,12 variantNucMuts_XBB_1_9,12 variantNucMuts_XBB_2_3,12 gisaid-derived nextstrainSamples,686 github abEscape,576 abEscape,607 artic,57 articV4,57 articV4_1,68 bloomEscMabAvg,580 bloomEscMabAvg,611 bloomEscMax,586 bloomEscMax,617 bloomEscSerumAvg,581 bloomEscSerumAvg,612 bloomEscTop,584 bloomEscTop,615 escape,583 escape,614 mccoy,576 mccoy,607 problematicSites,110 problematicSites,449 problematicSites,491 pyle,199 pyle,252 pyle,262 rappuoli,583 rappuoli,614 unipCov2AliSwissprot,259 unipCov2Chain,489 unipCov2DisulfBond,485 unipCov2Domain,484 unipCov2Interest,165 unipCov2LocCytopl,484 unipCov2LocExtra,484 unipCov2LocSignal,485 unipCov2LocTransMemb,485 unipCov2Modif,488 unipCov2Mut,485 unipCov2Other,485 unipCov2Repeat,483 unipCov2Struct,487 vaccines,209 vaccines,528 varskip,64 github.com microdel,211 nextstrainClade,89 problematicSites,113 problematicSites,452 pyle,274 sarsCov2Phylo,927 gitlab.com cas13Crispr,122 give sarsCov2Phylo,794 given IgG_Z-score-_COVID-19_patients,361 IgM_Z-score-_COVID-19_patients,361 Q0_tracks,439 Q0_tracks,443 Q0_tracks,691 Q0_tracks,749 Q0_tracks,753 Q1_tracks,441 Q1_tracks,445 Q1_tracks,693 Q1_tracks,751 Q1_tracks,755 Q2_tracks,441 Q2_tracks,445 Q2_tracks,693 Q2_tracks,751 Q2_tracks,755 Q3_tracks,441 Q3_tracks,445 Q3_tracks,693 Q3_tracks,751 Q3_tracks,755 abEscape,298 abEscape,350 artic,144 articV4,144 articV4_1,157 bloomEscMabAvg,302 bloomEscMabAvg,354 bloomEscMax,308 bloomEscMax,360 bloomEscSerumAvg,303 bloomEscSerumAvg,355 bloomEscTop,306 bloomEscTop,358 bpmIggCovidSum,370 bpmIgmCovidSum,370 cas13Crispr,158 cas13Crispr,187 cas13Crispr,429 contacts,357 escape,305 escape,357 galaxyEna,441 galaxyEna,445 galaxyEna,693 galaxyEna,751 galaxyEna,755 galaxyEnaQ0Ba-1,437 galaxyEnaQ0Ba-1,441 galaxyEnaQ0Ba-1,689 galaxyEnaQ0Ba-1,747 galaxyEnaQ0Ba-1,751 galaxyEnaQ0Ba-1-1,437 galaxyEnaQ0Ba-1-1,441 galaxyEnaQ0Ba-1-1,689 galaxyEnaQ0Ba-1-1,747 galaxyEnaQ0Ba-1-1,751 galaxyEnaQ0Ba-1-1-11,437 galaxyEnaQ0Ba-1-1-11,441 galaxyEnaQ0Ba-1-1-11,689 galaxyEnaQ0Ba-1-1-11,747 galaxyEnaQ0Ba-1-1-11,751 galaxyEnaQ0Ba-1-17,437 galaxyEnaQ0Ba-1-17,441 galaxyEnaQ0Ba-1-17,689 galaxyEnaQ0Ba-1-17,747 galaxyEnaQ0Ba-1-17,751 galaxyEnaQ0Ba-2,437 galaxyEnaQ0Ba-2,441 galaxyEnaQ0Ba-2,689 galaxyEnaQ0Ba-2,747 galaxyEnaQ0Ba-2,751 galaxyEnaQ1Ay-4,437 galaxyEnaQ1Ay-4,441 galaxyEnaQ1Ay-4,689 galaxyEnaQ1Ay-4,747 galaxyEnaQ1Ay-4,751 galaxyEnaQ1Ay-4-2,437 galaxyEnaQ1Ay-4-2,441 galaxyEnaQ1Ay-4-2,689 galaxyEnaQ1Ay-4-2,747 galaxyEnaQ1Ay-4-2,751 galaxyEnaQ1Ay-4-2-2,437 galaxyEnaQ1Ay-4-2-2,441 galaxyEnaQ1Ay-4-2-2,689 galaxyEnaQ1Ay-4-2-2,747 galaxyEnaQ1Ay-4-2-2,751 galaxyEnaQ1Ay-43,437 galaxyEnaQ1Ay-43,441 galaxyEnaQ1Ay-43,689 galaxyEnaQ1Ay-43,747 galaxyEnaQ1Ay-43,751 galaxyEnaQ1Ba-1-17,437 galaxyEnaQ1Ba-1-17,441 galaxyEnaQ1Ba-1-17,689 galaxyEnaQ1Ba-1-17,747 galaxyEnaQ1Ba-1-17,751 galaxyEnaQ2Ay-120,437 galaxyEnaQ2Ay-120,441 galaxyEnaQ2Ay-120,689 galaxyEnaQ2Ay-120,747 galaxyEnaQ2Ay-120,751 galaxyEnaQ2Ay-122,437 galaxyEnaQ2Ay-122,441 galaxyEnaQ2Ay-122,689 galaxyEnaQ2Ay-122,747 galaxyEnaQ2Ay-122,751 galaxyEnaQ2Ay-4,437 galaxyEnaQ2Ay-4,441 galaxyEnaQ2Ay-4,689 galaxyEnaQ2Ay-4,747 galaxyEnaQ2Ay-4,751 galaxyEnaQ2Ay-5,437 galaxyEnaQ2Ay-5,441 galaxyEnaQ2Ay-5,689 galaxyEnaQ2Ay-5,747 galaxyEnaQ2Ay-5,751 galaxyEnaQ2Ay-6,437 galaxyEnaQ2Ay-6,441 galaxyEnaQ2Ay-6,689 galaxyEnaQ2Ay-6,747 galaxyEnaQ2Ay-6,751 galaxyEnaQ3Ay-4,437 galaxyEnaQ3Ay-4,441 galaxyEnaQ3Ay-4,689 galaxyEnaQ3Ay-4,747 galaxyEnaQ3Ay-4,751 galaxyEnaQ3Ay-5,437 galaxyEnaQ3Ay-5,441 galaxyEnaQ3Ay-5,689 galaxyEnaQ3Ay-5,747 galaxyEnaQ3Ay-5,751 galaxyEnaQ3Ay-9,437 galaxyEnaQ3Ay-9,441 galaxyEnaQ3Ay-9,689 galaxyEnaQ3Ay-9,747 galaxyEnaQ3Ay-9,751 galaxyEnaQ3B-1-1-7,437 galaxyEnaQ3B-1-1-7,441 galaxyEnaQ3B-1-1-7,689 galaxyEnaQ3B-1-1-7,747 galaxyEnaQ3B-1-1-7,751 galaxyEnaQ3B-1-617-2,437 galaxyEnaQ3B-1-617-2,441 galaxyEnaQ3B-1-617-2,689 galaxyEnaQ3B-1-617-2,747 galaxyEnaQ3B-1-617-2,751 kimRnaMod,191 kimTranscripts,408 mccoy,298 mccoy,350 ncbiGeneBGP,129 ncbiProducts,145 pbm,370 phyloGenes,405 poranHla1,218 poranHla2,218 rapid,298 rappuoli,305 rappuoli,357 swift,227 transcriptome,414 unipCov2AliSwissprot,233 unipCov2AliSwissprot,359 unipCov2Chain,589 unipCov2DisulfBond,585 unipCov2Domain,584 unipCov2Interest,265 unipCov2LocCytopl,584 unipCov2LocExtra,584 unipCov2LocSignal,585 unipCov2LocTransMemb,585 unipCov2Modif,588 unipCov2Mut,585 unipCov2Other,585 unipCov2Repeat,583 unipCov2Struct,587 varskip,150 gives Calu3_07hpi,181 ORFs,179 Vero6_05hpi,181 Vero6_24hpi,181 contacts,241 weizmanOrfs,187 giving nextstrainSamples,158 gk variantMuts,323 gladman Q0_tracks,1247 Q0_tracks,1321 Q1_tracks,1249 Q1_tracks,1323 Q2_tracks,1249 Q2_tracks,1323 Q3_tracks,1249 Q3_tracks,1323 galaxyEna,1249 galaxyEna,1323 galaxyEnaQ0Ba-1,1245 galaxyEnaQ0Ba-1,1319 galaxyEnaQ0Ba-1-1,1245 galaxyEnaQ0Ba-1-1,1319 galaxyEnaQ0Ba-1-1-11,1245 galaxyEnaQ0Ba-1-1-11,1319 galaxyEnaQ0Ba-1-17,1245 galaxyEnaQ0Ba-1-17,1319 galaxyEnaQ0Ba-2,1245 galaxyEnaQ0Ba-2,1319 galaxyEnaQ1Ay-4,1245 galaxyEnaQ1Ay-4,1319 galaxyEnaQ1Ay-4-2,1245 galaxyEnaQ1Ay-4-2,1319 galaxyEnaQ1Ay-4-2-2,1245 galaxyEnaQ1Ay-4-2-2,1319 galaxyEnaQ1Ay-43,1245 galaxyEnaQ1Ay-43,1319 galaxyEnaQ1Ba-1-17,1245 galaxyEnaQ1Ba-1-17,1319 galaxyEnaQ2Ay-120,1245 galaxyEnaQ2Ay-120,1319 galaxyEnaQ2Ay-122,1245 galaxyEnaQ2Ay-122,1319 galaxyEnaQ2Ay-4,1245 galaxyEnaQ2Ay-4,1319 galaxyEnaQ2Ay-5,1245 galaxyEnaQ2Ay-5,1319 galaxyEnaQ2Ay-6,1245 galaxyEnaQ2Ay-6,1319 galaxyEnaQ3Ay-4,1245 galaxyEnaQ3Ay-4,1319 galaxyEnaQ3Ay-5,1245 galaxyEnaQ3Ay-5,1319 galaxyEnaQ3Ay-9,1245 galaxyEnaQ3Ay-9,1319 galaxyEnaQ3B-1-1-7,1245 galaxyEnaQ3B-1-1-7,1319 galaxyEnaQ3B-1-617-2,1245 galaxyEnaQ3B-1-617-2,1319 global Q0_tracks,1344 Q1_tracks,1346 Q2_tracks,1346 Q3_tracks,1346 galaxyEna,1346 galaxyEnaQ0Ba-1,1342 galaxyEnaQ0Ba-1-1,1342 galaxyEnaQ0Ba-1-1-11,1342 galaxyEnaQ0Ba-1-17,1342 galaxyEnaQ0Ba-2,1342 galaxyEnaQ1Ay-4,1342 galaxyEnaQ1Ay-4-2,1342 galaxyEnaQ1Ay-4-2-2,1342 galaxyEnaQ1Ay-43,1342 galaxyEnaQ1Ba-1-17,1342 galaxyEnaQ2Ay-120,1342 galaxyEnaQ2Ay-122,1342 galaxyEnaQ2Ay-4,1342 galaxyEnaQ2Ay-5,1342 galaxyEnaQ2Ay-6,1342 galaxyEnaQ3Ay-4,1342 galaxyEnaQ3Ay-5,1342 galaxyEnaQ3Ay-9,1342 galaxyEnaQ3B-1-1-7,1342 galaxyEnaQ3B-1-617-2,1342 pyle,319 recomb,203 recomb,232 sarsCov2PhyloPub,1042 variantMuts,1436 global_profile_alignment.sh variantMuts,841 glyco unipCov2AliSwissprot,95 unipCov2Chain,280 unipCov2DisulfBond,276 unipCov2Domain,275 unipCov2LocCytopl,275 unipCov2LocExtra,275 unipCov2LocSignal,276 unipCov2LocTransMemb,276 unipCov2Modif,279 unipCov2Mut,276 unipCov2Other,276 unipCov2Repeat,274 unipCov2Struct,278 glycoprotein potPathoIndel,66 potPathoIndel,85 vaccines,453 vaccines,560 glycosyl unipCov2Modif,1 glycosylation unipCov2Chain,200 unipCov2Chain,393 unipCov2DisulfBond,196 unipCov2DisulfBond,389 unipCov2Domain,195 unipCov2Domain,388 unipCov2LocCytopl,195 unipCov2LocCytopl,388 unipCov2LocExtra,195 unipCov2LocExtra,388 unipCov2LocSignal,196 unipCov2LocSignal,389 unipCov2LocTransMemb,196 unipCov2LocTransMemb,389 unipCov2Modif,6 unipCov2Modif,199 unipCov2Modif,392 unipCov2Mut,196 unipCov2Mut,389 unipCov2Other,196 unipCov2Other,389 unipCov2Repeat,194 unipCov2Repeat,387 unipCov2Struct,198 unipCov2Struct,391 go genscan,113 goba multiz7way,933 strainCons119way,2311 strainCons44way,1906 godzik resistPred,258 goes Q0_tracks,663 Q1_tracks,665 Q2_tracks,665 Q3_tracks,665 galaxyEna,665 galaxyEnaQ0Ba-1,661 galaxyEnaQ0Ba-1-1,661 galaxyEnaQ0Ba-1-1-11,661 galaxyEnaQ0Ba-1-17,661 galaxyEnaQ0Ba-2,661 galaxyEnaQ1Ay-4,661 galaxyEnaQ1Ay-4-2,661 galaxyEnaQ1Ay-4-2-2,661 galaxyEnaQ1Ay-43,661 galaxyEnaQ1Ba-1-17,661 galaxyEnaQ2Ay-120,661 galaxyEnaQ2Ay-122,661 galaxyEnaQ2Ay-4,661 galaxyEnaQ2Ay-5,661 galaxyEnaQ2Ay-6,661 galaxyEnaQ3Ay-4,661 galaxyEnaQ3Ay-5,661 galaxyEnaQ3Ay-9,661 galaxyEnaQ3B-1-1-7,661 galaxyEnaQ3B-1-617-2,661 gold gold,90 gold,104 goldenpath vaccines,374 goldman problematicSites,549 problematicSites,573 sarsCov2Phylo,1060 sarsCov2Phylo,1084 sarsCov2PhyloPub,1180 sarsCov2PhyloPub,1204 gonzalez PhyloCSF_smooth,738 PhyloCSFpower,704 rnaStructRangan,92 google rapid,196 gordon gordon2,7 gordon2,21 gordon2,254 resist,42 goudy cas13Crispr,500 gozashti problematicSites,410 problematicSites,563 problematicSites,591 sarsCov2Phylo,1074 sarsCov2Phylo,1102 sarsCov2PhyloPub,1194 sarsCov2PhyloPub,1227 gq153542v1 strainCons44way,1206 gq153547v1 strainCons44way,1205 gr Q0_tracks,1249 Q0_tracks,1330 Q1_tracks,1251 Q1_tracks,1332 Q2_tracks,1251 Q2_tracks,1332 Q3_tracks,1251 Q3_tracks,1332 galaxyEna,1251 galaxyEna,1332 galaxyEnaQ0Ba-1,1247 galaxyEnaQ0Ba-1,1328 galaxyEnaQ0Ba-1-1,1247 galaxyEnaQ0Ba-1-1,1328 galaxyEnaQ0Ba-1-1-11,1247 galaxyEnaQ0Ba-1-1-11,1328 galaxyEnaQ0Ba-1-17,1247 galaxyEnaQ0Ba-1-17,1328 galaxyEnaQ0Ba-2,1247 galaxyEnaQ0Ba-2,1328 galaxyEnaQ1Ay-4,1247 galaxyEnaQ1Ay-4,1328 galaxyEnaQ1Ay-4-2,1247 galaxyEnaQ1Ay-4-2,1328 galaxyEnaQ1Ay-4-2-2,1247 galaxyEnaQ1Ay-4-2-2,1328 galaxyEnaQ1Ay-43,1247 galaxyEnaQ1Ay-43,1328 galaxyEnaQ1Ba-1-17,1247 galaxyEnaQ1Ba-1-17,1328 galaxyEnaQ2Ay-120,1247 galaxyEnaQ2Ay-120,1328 galaxyEnaQ2Ay-122,1247 galaxyEnaQ2Ay-122,1328 galaxyEnaQ2Ay-4,1247 galaxyEnaQ2Ay-4,1328 galaxyEnaQ2Ay-5,1247 galaxyEnaQ2Ay-5,1328 galaxyEnaQ2Ay-6,1247 galaxyEnaQ2Ay-6,1328 galaxyEnaQ3Ay-4,1247 galaxyEnaQ3Ay-4,1328 galaxyEnaQ3Ay-5,1247 galaxyEnaQ3Ay-5,1328 galaxyEnaQ3Ay-9,1247 galaxyEnaQ3Ay-9,1328 galaxyEnaQ3B-1-1-7,1247 galaxyEnaQ3B-1-1-7,1328 galaxyEnaQ3B-1-617-2,1247 galaxyEnaQ3B-1-617-2,1328 pond,258 sarsCov2Phylo,305 sarsCov2PhyloPub,312 variantMuts,307 variantMuts,340 variantMuts,630 gr-246462 PhyloCSFpower,751 gr.246462.118 PhyloCSFpower,754 gra variantMuts,357 variantMuts,373 variantMuts,387 variantMuts,401 variantMuts,415 variantMuts,430 variantMuts,444 variantMuts,462 variantMuts,483 variantMuts,504 variantMuts,518 variantMuts,537 variantMuts,555 variantMuts,574 variantMuts,589 variantMuts,604 variantMuts,617 granzyme cd8escape,61 graph gc5BaseBw,59 gc5BaseBw,78 nextstrainFreq,95 nextstrainParsimony,261 graphical gold,129 gratefully nextstrainParsimony,426 nextstrainSamples,903 sarsCov2Phylo,839 sarsCov2PhyloPub,922 variantMuts,1185 gray sarsCov2Phylo,550 sarsCov2PhyloPub,575 grayscale multiz7way,139 strainCons119way,488 strainCons44way,436 greaney Starr_Bloom,240 Starr_Bloom_bind,234 abEscape,109 abEscape,126 abEscape,690 abEscape,725 abEscape,827 bloomEscMabAvg,113 bloomEscMabAvg,130 bloomEscMabAvg,694 bloomEscMabAvg,729 bloomEscMabAvg,831 bloomEscMax,119 bloomEscMax,136 bloomEscMax,700 bloomEscMax,735 bloomEscMax,837 bloomEscSerumAvg,114 bloomEscSerumAvg,131 bloomEscSerumAvg,695 bloomEscSerumAvg,730 bloomEscSerumAvg,832 bloomEscTop,117 bloomEscTop,134 bloomEscTop,698 bloomEscTop,733 bloomEscTop,835 escape,116 escape,133 escape,697 escape,732 escape,834 mccoy,109 mccoy,126 mccoy,690 mccoy,725 mccoy,827 rappuoli,116 rappuoli,133 rappuoli,697 rappuoli,732 rappuoli,834 greater PhyloCSF_smooth,152 PhyloCSF_smooth,265 PhyloCSFpower,167 PhyloCSFpower,280 abEscape,368 bloomEscMabAvg,372 bloomEscMax,378 bloomEscSerumAvg,373 bloomEscTop,376 cpgIslandExt,267 cpgIslandExt,269 cpgIslandExt,274 cpgIslandExtUnmasked,270 cpgIslandExtUnmasked,272 cpgIslandExtUnmasked,277 cpgIslandSuper,267 cpgIslandSuper,269 cpgIslandSuper,274 escape,375 mccoy,368 rappuoli,375 greece Q0_tracks,1224 Q1_tracks,1226 Q2_tracks,1226 Q3_tracks,1226 galaxyEna,1226 galaxyEnaQ0Ba-1,1222 galaxyEnaQ0Ba-1-1,1222 galaxyEnaQ0Ba-1-1-11,1222 galaxyEnaQ0Ba-1-17,1222 galaxyEnaQ0Ba-2,1222 galaxyEnaQ1Ay-4,1222 galaxyEnaQ1Ay-4-2,1222 galaxyEnaQ1Ay-4-2-2,1222 galaxyEnaQ1Ay-43,1222 galaxyEnaQ1Ba-1-17,1222 galaxyEnaQ2Ay-120,1222 galaxyEnaQ2Ay-122,1222 galaxyEnaQ2Ay-4,1222 galaxyEnaQ2Ay-5,1222 galaxyEnaQ2Ay-6,1222 galaxyEnaQ3Ay-4,1222 galaxyEnaQ3Ay-5,1222 galaxyEnaQ3Ay-9,1222 galaxyEnaQ3B-1-1-7,1222 galaxyEnaQ3B-1-617-2,1222 greek-letter variantMuts,233 green cpgIslandExt,10 cpgIslandExtUnmasked,13 cpgIslandSuper,10 multiz7way,196 multiz7way,1185 rnaStructRangan,64 sarsCov2Phylo,428 sarsCov2PhyloPub,457 strainCons119way,545 strainCons119way,2563 strainCons44way,493 strainCons44way,2158 strainName119way,10 strainName44way,15 unipCov2Chain,397 unipCov2Chain,402 unipCov2DisulfBond,393 unipCov2DisulfBond,398 unipCov2Domain,392 unipCov2Domain,397 unipCov2LocCytopl,392 unipCov2LocCytopl,397 unipCov2LocExtra,392 unipCov2LocExtra,397 unipCov2LocSignal,393 unipCov2LocSignal,398 unipCov2LocTransMemb,393 unipCov2LocTransMemb,398 unipCov2Modif,396 unipCov2Modif,401 unipCov2Mut,393 unipCov2Mut,398 unipCov2Other,393 unipCov2Other,398 unipCov2Repeat,391 unipCov2Repeat,396 unipCov2Struct,395 unipCov2Struct,400 greenbaum iedb,101 grey Q0_tracks,456 Q0_tracks,473 Q1_tracks,458 Q1_tracks,475 Q2_tracks,458 Q2_tracks,475 Q3_tracks,458 Q3_tracks,475 galaxyEna,458 galaxyEna,475 galaxyEnaQ0Ba-1,454 galaxyEnaQ0Ba-1,471 galaxyEnaQ0Ba-1-1,454 galaxyEnaQ0Ba-1-1,471 galaxyEnaQ0Ba-1-1-11,454 galaxyEnaQ0Ba-1-1-11,471 galaxyEnaQ0Ba-1-17,454 galaxyEnaQ0Ba-1-17,471 galaxyEnaQ0Ba-2,454 galaxyEnaQ0Ba-2,471 galaxyEnaQ1Ay-4,454 galaxyEnaQ1Ay-4,471 galaxyEnaQ1Ay-4-2,454 galaxyEnaQ1Ay-4-2,471 galaxyEnaQ1Ay-4-2-2,454 galaxyEnaQ1Ay-4-2-2,471 galaxyEnaQ1Ay-43,454 galaxyEnaQ1Ay-43,471 galaxyEnaQ1Ba-1-17,454 galaxyEnaQ1Ba-1-17,471 galaxyEnaQ2Ay-120,454 galaxyEnaQ2Ay-120,471 galaxyEnaQ2Ay-122,454 galaxyEnaQ2Ay-122,471 galaxyEnaQ2Ay-4,454 galaxyEnaQ2Ay-4,471 galaxyEnaQ2Ay-5,454 galaxyEnaQ2Ay-5,471 galaxyEnaQ2Ay-6,454 galaxyEnaQ2Ay-6,471 galaxyEnaQ3Ay-4,454 galaxyEnaQ3Ay-4,471 galaxyEnaQ3Ay-5,454 galaxyEnaQ3Ay-5,471 galaxyEnaQ3Ay-9,454 galaxyEnaQ3Ay-9,471 galaxyEnaQ3B-1-1-7,454 galaxyEnaQ3B-1-1-7,471 galaxyEnaQ3B-1-617-2,454 galaxyEnaQ3B-1-617-2,471 grifoni epitopes,6 epitopes,318 grna kimRnaMod,12 mRNAs,3 mRNAs,9 transcriptome,168 group Negative_Selection,15 Positive_Selection,15 Starr_Bloom,13 Starr_Bloom_bind,14 augustusGene,198 augustusGene,235 epitopes,313 igg,12 igm,12 multiz7way,844 pbm,19 pbmShanghai,21 pond,12 pond,26 pyle,10 rosettaMhc,388 strainCons119way,2222 strainCons44way,1817 treangen,11 groups abEscape,13 augustusGene,194 nextstrainParsimony,419 nextstrainSamples,896 potPathoIndel,203 problematicSites,399 sarsCov2Phylo,832 sarsCov2PhyloPub,915 variantMuts,1178 gry variantMuts,272 gs cpgIslandExt,294 cpgIslandExtUnmasked,297 cpgIslandSuper,294 gt abEscape,887 abEscape,892 bloomEscMabAvg,891 bloomEscMabAvg,896 bloomEscMax,897 bloomEscMax,902 bloomEscSerumAvg,892 bloomEscSerumAvg,897 bloomEscTop,895 bloomEscTop,900 cpgIslandExt,422 cpgIslandExt,488 cpgIslandExtUnmasked,425 cpgIslandExtUnmasked,491 cpgIslandSuper,422 cpgIslandSuper,488 epitopes,108 escape,894 escape,899 gordon2,157 gordon2,172 kimTranscripts,185 kimTranscripts,231 kimTranscripts,272 mccoy,887 mccoy,892 microdel,94 nextstrainSamples,278 nextstrainSamples,289 pond,111 pyle,108 rappuoli,894 rappuoli,899 vaccines,266 vaccines,269 vaccines,323 vaccines,337 vaccines,472 guanine cpgIslandExt,52 cpgIslandExtUnmasked,55 cpgIslandSuper,52 gc5BaseBw,21 gudipati cd8escape,191 guidance primers,249 guide crisprDet,74 crisprDet,110 guides crisprDet,5 crisprDet,18 crisprDet,42 crisprDet,47 crisprDet,62 crisprDet,94 guilhem potPathoIndel,210 guo IgG_Z-score-_COVID-19_patients,421 IgM_Z-score-_COVID-19_patients,421 bpmIggCovidSum,430 bpmIgmCovidSum,430 pbm,430 pbmShanghai,510 gussow potPathoIndel,10 potPathoIndel,207 gwas PhyloCSF_smooth,768 PhyloCSFpower,747 gwhabkp00000000 strainCons119way,1595 gwhabkw00000000 strainCons119way,1596 gx-surveillance.json Q0_tracks,1031 Q1_tracks,1033 Q2_tracks,1033 Q3_tracks,1033 galaxyEna,1033 galaxyEnaQ0Ba-1,1029 galaxyEnaQ0Ba-1-1,1029 galaxyEnaQ0Ba-1-1-11,1029 galaxyEnaQ0Ba-1-17,1029 galaxyEnaQ0Ba-2,1029 galaxyEnaQ1Ay-4,1029 galaxyEnaQ1Ay-4-2,1029 galaxyEnaQ1Ay-4-2-2,1029 galaxyEnaQ1Ay-43,1029 galaxyEnaQ1Ba-1-17,1029 galaxyEnaQ2Ay-120,1029 galaxyEnaQ2Ay-122,1029 galaxyEnaQ2Ay-4,1029 galaxyEnaQ2Ay-5,1029 galaxyEnaQ2Ay-6,1029 galaxyEnaQ3Ay-4,1029 galaxyEnaQ3Ay-5,1029 galaxyEnaQ3Ay-9,1029 galaxyEnaQ3B-1-1-7,1029 galaxyEnaQ3B-1-617-2,1029 gx2013 strainCons44way,1096 h Calu3_07hpi,359 Calu3_07hpi,361 H_152Max,2 H_152Total,2 H_152Total,11 H_61Max,2 H_61Total,2 H_61Total,11 ORFs,357 ORFs,359 Vero6_05hpi,359 Vero6_05hpi,361 Vero6_24hpi,359 Vero6_24hpi,361 abEscape,701 abEscape,795 abEscape,798 bloomEscMabAvg,705 bloomEscMabAvg,799 bloomEscMabAvg,802 bloomEscMax,711 bloomEscMax,805 bloomEscMax,808 bloomEscSerumAvg,706 bloomEscSerumAvg,800 bloomEscSerumAvg,803 bloomEscTop,709 bloomEscTop,803 bloomEscTop,806 escape,708 escape,802 escape,805 iedb,104 kimIvtCov,184 kimTranscripts,471 mccoy,701 mccoy,795 mccoy,798 multiz7way,1049 multiz7way,1184 pbmShanghai,507 pdb,144 pyle,281 rappuoli,708 rappuoli,802 rappuoli,805 strainCons119way,2427 strainCons119way,2562 strainCons44way,2022 strainCons44way,2157 transcriptome,477 treangen,307 unipCov2AliSwissprot,469 unipCov2Chain,698 unipCov2DisulfBond,694 unipCov2Domain,693 unipCov2Interest,352 unipCov2LocCytopl,693 unipCov2LocExtra,693 unipCov2LocSignal,694 unipCov2LocTransMemb,694 unipCov2Modif,697 unipCov2Mut,694 unipCov2Other,694 unipCov2Repeat,692 unipCov2Struct,696 weizmanOrfs,365 weizmanOrfs,367 h69 spikeMuts,123 h_152 H_152Max,10 h_61 H_61Max,10 h_bind_avg H_bind_avg,1 h_expr_avg H_expr_avg_Expression,1 ha nextstrainSamples,1056 haag variantMuts,1472 haarvi abEscape,105 bloomEscMabAvg,109 bloomEscMax,115 bloomEscSerumAvg,110 bloomEscTop,113 escape,112 mccoy,105 rappuoli,112 hadfield nextstrainClade,242 nextstrainFreq,377 nextstrainGene,191 nextstrainParsimony,444 nextstrainSamples,997 haeseler nextstrainSamples,1058 haeussler ncbiGeneBGP,170 ncbiProducts,186 primers,364 resist,63 unipCov2AliSwissprot,407 unipCov2Chain,637 unipCov2DisulfBond,633 unipCov2Domain,632 unipCov2Interest,290 unipCov2LocCytopl,632 unipCov2LocExtra,632 unipCov2LocSignal,633 unipCov2LocTransMemb,633 unipCov2Modif,636 unipCov2Mut,633 unipCov2Other,633 unipCov2Repeat,631 unipCov2Struct,635 haiyan abEscape,786 bloomEscMabAvg,790 bloomEscMax,796 bloomEscSerumAvg,791 bloomEscTop,794 escape,793 mccoy,786 rappuoli,793 hand strainCons119way,273 strainCons44way,221 hangzhou strainCons119way,1063 hannon abEscape,831 bloomEscMabAvg,835 bloomEscMax,841 bloomEscSerumAvg,836 bloomEscTop,839 escape,838 mccoy,831 rappuoli,838 haplotypes recomb,148 happen PhyloCSF_smooth,294 PhyloCSFpower,309 harbor multiz7way,863 strainCons119way,2241 strainCons44way,1836 hard Q0_tracks,796 Q1_tracks,798 Q2_tracks,798 Q3_tracks,798 cpgIslandExt,416 cpgIslandExtUnmasked,419 cpgIslandSuper,416 galaxyEna,798 galaxyEnaQ0Ba-1,794 galaxyEnaQ0Ba-1-1,794 galaxyEnaQ0Ba-1-1-11,794 galaxyEnaQ0Ba-1-17,794 galaxyEnaQ0Ba-2,794 galaxyEnaQ1Ay-4,794 galaxyEnaQ1Ay-4-2,794 galaxyEnaQ1Ay-4-2-2,794 galaxyEnaQ1Ay-43,794 galaxyEnaQ1Ba-1-17,794 galaxyEnaQ2Ay-120,794 galaxyEnaQ2Ay-122,794 galaxyEnaQ2Ay-4,794 galaxyEnaQ2Ay-5,794 galaxyEnaQ2Ay-6,794 galaxyEnaQ3Ay-4,794 galaxyEnaQ3Ay-5,794 galaxyEnaQ3Ay-9,794 galaxyEnaQ3B-1-1-7,794 galaxyEnaQ3B-1-617-2,794 harder kimIvtCov,80 hardison multiz7way,1255 strainCons119way,2633 strainCons44way,2228 harjanto poranHla1,262 poranHla2,262 harr Calu3_07hpi,148 Harr_24hr_1,2 Harr_24hr_1,6 Harr_24hr_2,2 Harr_24hr_2,6 Harr_5hr_1,2 Harr_5hr_1,6 Harr_5hr_2,2 Harr_5hr_2,6 Harr_7hr_1,2 Harr_7hr_1,6 Harr_7hr_2,2 Harr_7hr_2,6 ORFs,146 Vero6_05hpi,148 Vero6_24hpi,148 weizmanOrfs,154 harringtonine Calu3_07hpi,147 ORFs,145 Vero6_05hpi,147 Vero6_24hpi,147 weizmanOrfs,153 harris multiz7way,835 multiz7way,1230 strainCons119way,2213 strainCons119way,2608 strainCons44way,1808 strainCons44way,2203 has Q0_tracks,263 Q0_tracks,594 Q0_tracks,603 Q1_tracks,265 Q1_tracks,596 Q1_tracks,605 Q2_tracks,265 Q2_tracks,596 Q2_tracks,605 Q3_tracks,265 Q3_tracks,596 Q3_tracks,605 abEscape,472 addgene,103 bloomEscMabAvg,476 bloomEscMax,482 bloomEscSerumAvg,477 bloomEscTop,480 cas13Crispr,107 epitopes,234 escape,479 galaxyEna,265 galaxyEna,596 galaxyEna,605 galaxyEnaQ0Ba-1,261 galaxyEnaQ0Ba-1,592 galaxyEnaQ0Ba-1,601 galaxyEnaQ0Ba-1-1,261 galaxyEnaQ0Ba-1-1,592 galaxyEnaQ0Ba-1-1,601 galaxyEnaQ0Ba-1-1-11,261 galaxyEnaQ0Ba-1-1-11,592 galaxyEnaQ0Ba-1-1-11,601 galaxyEnaQ0Ba-1-17,261 galaxyEnaQ0Ba-1-17,592 galaxyEnaQ0Ba-1-17,601 galaxyEnaQ0Ba-2,261 galaxyEnaQ0Ba-2,592 galaxyEnaQ0Ba-2,601 galaxyEnaQ1Ay-4,261 galaxyEnaQ1Ay-4,592 galaxyEnaQ1Ay-4,601 galaxyEnaQ1Ay-4-2,261 galaxyEnaQ1Ay-4-2,592 galaxyEnaQ1Ay-4-2,601 galaxyEnaQ1Ay-4-2-2,261 galaxyEnaQ1Ay-4-2-2,592 galaxyEnaQ1Ay-4-2-2,601 galaxyEnaQ1Ay-43,261 galaxyEnaQ1Ay-43,592 galaxyEnaQ1Ay-43,601 galaxyEnaQ1Ba-1-17,261 galaxyEnaQ1Ba-1-17,592 galaxyEnaQ1Ba-1-17,601 galaxyEnaQ2Ay-120,261 galaxyEnaQ2Ay-120,592 galaxyEnaQ2Ay-120,601 galaxyEnaQ2Ay-122,261 galaxyEnaQ2Ay-122,592 galaxyEnaQ2Ay-122,601 galaxyEnaQ2Ay-4,261 galaxyEnaQ2Ay-4,592 galaxyEnaQ2Ay-4,601 galaxyEnaQ2Ay-5,261 galaxyEnaQ2Ay-5,592 galaxyEnaQ2Ay-5,601 galaxyEnaQ2Ay-6,261 galaxyEnaQ2Ay-6,592 galaxyEnaQ2Ay-6,601 galaxyEnaQ3Ay-4,261 galaxyEnaQ3Ay-4,592 galaxyEnaQ3Ay-4,601 galaxyEnaQ3Ay-5,261 galaxyEnaQ3Ay-5,592 galaxyEnaQ3Ay-5,601 galaxyEnaQ3Ay-9,261 galaxyEnaQ3Ay-9,592 galaxyEnaQ3Ay-9,601 galaxyEnaQ3B-1-1-7,261 galaxyEnaQ3B-1-1-7,592 galaxyEnaQ3B-1-1-7,601 galaxyEnaQ3B-1-617-2,261 galaxyEnaQ3B-1-617-2,592 galaxyEnaQ3B-1-617-2,601 gap,117 kimRnaMod,62 mccoy,472 nextstrainClade,29 nextstrainFreq,29 nextstrainGene,27 nextstrainParsimony,46 nextstrainSamples,42 nextstrainSamples,104 nextstrainSamples,261 pdb,34 phyloGenes,113 phyloGenes,139 phyloGenes,212 phyloGenes,235 phyloGenes,265 phyloGenes,316 pond,93 pond,107 pond,154 pyle,136 pyle,144 rappuoli,479 strainCons119way,165 strainCons44way,113 transcriptome,152 unipCov2Chain,31 unipCov2DisulfBond,27 unipCov2Domain,26 unipCov2Interest,33 unipCov2LocCytopl,26 unipCov2LocExtra,26 unipCov2LocSignal,27 unipCov2LocTransMemb,27 unipCov2Modif,30 unipCov2Mut,27 unipCov2Other,27 unipCov2Repeat,25 unipCov2Struct,29 vaccines,444 variantMuts,206 variantMuts,218 haussler augustusGene,292 contacts,406 multiz7way,870 multiz7way,1081 multiz7way,1134 multiz7way,1257 problematicSites,597 recomb,339 sarsCov2Phylo,1108 sarsCov2PhyloPub,1231 strainCons119way,1835 strainCons119way,2248 strainCons119way,2459 strainCons119way,2512 strainCons119way,2635 strainCons44way,1430 strainCons44way,1843 strainCons44way,2054 strainCons44way,2107 strainCons44way,2230 haussler-lab kimTranscripts,453 transcriptome,459 have PhyloCSF_smooth,150 PhyloCSF_smooth,238 PhyloCSF_smooth,249 PhyloCSF_smooth,331 PhyloCSF_smooth,497 PhyloCSFpower,165 PhyloCSFpower,253 PhyloCSFpower,264 PhyloCSFpower,346 PhyloCSFpower,512 Q0_tracks,530 Q0_tracks,699 Q0_tracks,717 Q0_tracks,736 Q0_tracks,1190 Q1_tracks,532 Q1_tracks,701 Q1_tracks,719 Q1_tracks,738 Q1_tracks,1192 Q2_tracks,532 Q2_tracks,701 Q2_tracks,719 Q2_tracks,738 Q2_tracks,1192 Q3_tracks,532 Q3_tracks,701 Q3_tracks,719 Q3_tracks,738 Q3_tracks,1192 cas13Crispr,59 cd8escape,52 epitopes,103 epitopes,258 galaxyEna,532 galaxyEna,701 galaxyEna,719 galaxyEna,738 galaxyEna,1192 galaxyEnaQ0Ba-1,528 galaxyEnaQ0Ba-1,697 galaxyEnaQ0Ba-1,715 galaxyEnaQ0Ba-1,734 galaxyEnaQ0Ba-1,1188 galaxyEnaQ0Ba-1-1,528 galaxyEnaQ0Ba-1-1,697 galaxyEnaQ0Ba-1-1,715 galaxyEnaQ0Ba-1-1,734 galaxyEnaQ0Ba-1-1,1188 galaxyEnaQ0Ba-1-1-11,528 galaxyEnaQ0Ba-1-1-11,697 galaxyEnaQ0Ba-1-1-11,715 galaxyEnaQ0Ba-1-1-11,734 galaxyEnaQ0Ba-1-1-11,1188 galaxyEnaQ0Ba-1-17,528 galaxyEnaQ0Ba-1-17,697 galaxyEnaQ0Ba-1-17,715 galaxyEnaQ0Ba-1-17,734 galaxyEnaQ0Ba-1-17,1188 galaxyEnaQ0Ba-2,528 galaxyEnaQ0Ba-2,697 galaxyEnaQ0Ba-2,715 galaxyEnaQ0Ba-2,734 galaxyEnaQ0Ba-2,1188 galaxyEnaQ1Ay-4,528 galaxyEnaQ1Ay-4,697 galaxyEnaQ1Ay-4,715 galaxyEnaQ1Ay-4,734 galaxyEnaQ1Ay-4,1188 galaxyEnaQ1Ay-4-2,528 galaxyEnaQ1Ay-4-2,697 galaxyEnaQ1Ay-4-2,715 galaxyEnaQ1Ay-4-2,734 galaxyEnaQ1Ay-4-2,1188 galaxyEnaQ1Ay-4-2-2,528 galaxyEnaQ1Ay-4-2-2,697 galaxyEnaQ1Ay-4-2-2,715 galaxyEnaQ1Ay-4-2-2,734 galaxyEnaQ1Ay-4-2-2,1188 galaxyEnaQ1Ay-43,528 galaxyEnaQ1Ay-43,697 galaxyEnaQ1Ay-43,715 galaxyEnaQ1Ay-43,734 galaxyEnaQ1Ay-43,1188 galaxyEnaQ1Ba-1-17,528 galaxyEnaQ1Ba-1-17,697 galaxyEnaQ1Ba-1-17,715 galaxyEnaQ1Ba-1-17,734 galaxyEnaQ1Ba-1-17,1188 galaxyEnaQ2Ay-120,528 galaxyEnaQ2Ay-120,697 galaxyEnaQ2Ay-120,715 galaxyEnaQ2Ay-120,734 galaxyEnaQ2Ay-120,1188 galaxyEnaQ2Ay-122,528 galaxyEnaQ2Ay-122,697 galaxyEnaQ2Ay-122,715 galaxyEnaQ2Ay-122,734 galaxyEnaQ2Ay-122,1188 galaxyEnaQ2Ay-4,528 galaxyEnaQ2Ay-4,697 galaxyEnaQ2Ay-4,715 galaxyEnaQ2Ay-4,734 galaxyEnaQ2Ay-4,1188 galaxyEnaQ2Ay-5,528 galaxyEnaQ2Ay-5,697 galaxyEnaQ2Ay-5,715 galaxyEnaQ2Ay-5,734 galaxyEnaQ2Ay-5,1188 galaxyEnaQ2Ay-6,528 galaxyEnaQ2Ay-6,697 galaxyEnaQ2Ay-6,715 galaxyEnaQ2Ay-6,734 galaxyEnaQ2Ay-6,1188 galaxyEnaQ3Ay-4,528 galaxyEnaQ3Ay-4,697 galaxyEnaQ3Ay-4,715 galaxyEnaQ3Ay-4,734 galaxyEnaQ3Ay-4,1188 galaxyEnaQ3Ay-5,528 galaxyEnaQ3Ay-5,697 galaxyEnaQ3Ay-5,715 galaxyEnaQ3Ay-5,734 galaxyEnaQ3Ay-5,1188 galaxyEnaQ3Ay-9,528 galaxyEnaQ3Ay-9,697 galaxyEnaQ3Ay-9,715 galaxyEnaQ3Ay-9,734 galaxyEnaQ3Ay-9,1188 galaxyEnaQ3B-1-1-7,528 galaxyEnaQ3B-1-1-7,697 galaxyEnaQ3B-1-1-7,715 galaxyEnaQ3B-1-1-7,734 galaxyEnaQ3B-1-1-7,1188 galaxyEnaQ3B-1-617-2,528 galaxyEnaQ3B-1-617-2,697 galaxyEnaQ3B-1-617-2,715 galaxyEnaQ3B-1-617-2,734 galaxyEnaQ3B-1-617-2,1188 icshape,51 microdel,15 nextstrainFreq,18 nextstrainGene,62 nextstrainParsimony,31 nextstrainParsimony,142 nextstrainParsimony,152 nextstrainParsimony,187 nextstrainSamples,28 nextstrainSamples,85 nextstrainSamples,243 nextstrainSamples,568 nextstrainSamples,752 phyloGenes,156 pond,121 primers,67 problematicSites,94 problematicSites,105 problematicSites,117 problematicSites,214 problematicSites,313 publicAnnots,84 publicAnnots,97 sarsCov2Phylo,690 sarsCov2PhyloPub,797 sarsCov2PhyloPub,947 spikeMuts,41 spikeMuts,68 spikeMuts,77 strainCons119way,229 strainCons119way,247 strainCons119way,2090 strainCons44way,177 strainCons44way,195 strainCons44way,1685 targets,54 treangen,26 treangen,39 treangen,182 unipCov2AliSwissprot,61 variantMuts,100 variantMuts,1086 having cas13Crispr,71 cpgIslandExt,138 cpgIslandExtUnmasked,141 cpgIslandSuper,138 hcov-19 nextstrainSamples,869 sarsCov2Phylo,601 sarsCov2Phylo,671 sarsCov2PhyloPub,628 sarsCov2PhyloPub,695 hd targets,104 he PhyloCSFpower,718 head vaccines,319 headers pyle,260 health Q0_tracks,1171 Q1_tracks,1173 Q2_tracks,1173 Q3_tracks,1173 galaxyEna,1173 galaxyEnaQ0Ba-1,1169 galaxyEnaQ0Ba-1-1,1169 galaxyEnaQ0Ba-1-1-11,1169 galaxyEnaQ0Ba-1-17,1169 galaxyEnaQ0Ba-2,1169 galaxyEnaQ1Ay-4,1169 galaxyEnaQ1Ay-4-2,1169 galaxyEnaQ1Ay-4-2-2,1169 galaxyEnaQ1Ay-43,1169 galaxyEnaQ1Ba-1-17,1169 galaxyEnaQ2Ay-120,1169 galaxyEnaQ2Ay-122,1169 galaxyEnaQ2Ay-4,1169 galaxyEnaQ2Ay-5,1169 galaxyEnaQ2Ay-6,1169 galaxyEnaQ3Ay-4,1169 galaxyEnaQ3Ay-5,1169 galaxyEnaQ3Ay-9,1169 galaxyEnaQ3B-1-1-7,1169 galaxyEnaQ3B-1-617-2,1169 microdel,125 microdel,221 ncbiGeneBGP,193 ncbiProducts,209 primers,144 vaccines,37 vaccines,550 variantMuts,44 variantMuts,239 healthy IgG_Z-score-_COVID-19_patients,42 IgM_Z-score-_COVID-19_patients,42 bpmIggCovidSum,51 bpmIgmCovidSum,51 pbm,51 targets,31 targets,102 targets,244 heatmap Starr_Bloom,148 Starr_Bloom_bind,142 heatmap-like IgG_Z-score-_COVID-19_patients,223 IgM_Z-score-_COVID-19_patients,223 bpmIggCovidSum,232 bpmIgmCovidSum,232 pbm,232 pbmShanghai,379 heavily unipCov2AliSwissprot,210 unipCov2Chain,463 unipCov2DisulfBond,459 unipCov2Domain,458 unipCov2Interest,139 unipCov2LocCytopl,458 unipCov2LocExtra,458 unipCov2LocSignal,459 unipCov2LocTransMemb,459 unipCov2Modif,462 unipCov2Mut,459 unipCov2Other,459 unipCov2Repeat,457 unipCov2Struct,461 heb2013 strainCons44way,1043 heguy microdel,260 height kimNp,48 kimNp,73 nextstrainFreq,98 nextstrainParsimony,264 nextstrainSamples,490 nextstrainSamples,529 sarsCov2Phylo,521 sarsCov2Phylo,534 sarsCov2PhyloPub,546 sarsCov2PhyloPub,559 helen vaccines,504 helices unipCov2Chain,225 unipCov2DisulfBond,221 unipCov2Domain,220 unipCov2LocCytopl,220 unipCov2LocExtra,220 unipCov2LocSignal,221 unipCov2LocTransMemb,221 unipCov2Modif,224 unipCov2Mut,221 unipCov2Other,221 unipCov2Repeat,219 unipCov2Struct,223 help PhyloCSF_smooth,18 PhyloCSF_smooth,98 PhyloCSFpower,33 PhyloCSFpower,113 cpgIslandExt,546 cpgIslandExtUnmasked,549 cpgIslandSuper,546 gc5BaseBw,61 ncbiGeneBGP,177 ncbiProducts,193 unipCov2AliSwissprot,411 unipCov2Chain,641 unipCov2DisulfBond,637 unipCov2Domain,636 unipCov2Interest,294 unipCov2LocCytopl,636 unipCov2LocExtra,636 unipCov2LocSignal,637 unipCov2LocTransMemb,637 unipCov2Modif,640 unipCov2Mut,637 unipCov2Other,637 unipCov2Repeat,635 unipCov2Struct,639 helps PhyloCSF_smooth,765 PhyloCSFpower,744 cpgIslandExt,74 cpgIslandExtUnmasked,77 cpgIslandSuper,74 heng variantMuts,1448 hepatitis strainCons119way,1377 here IgG_Z-score-_COVID-19_patients,60 IgM_Z-score-_COVID-19_patients,60 Starr_Bloom,168 Starr_Bloom_bind,162 abEscape,53 bloomEscMabAvg,57 bloomEscMax,63 bloomEscSerumAvg,58 bloomEscTop,61 bpmIggCovidSum,69 bpmIgmCovidSum,69 crisprDet,100 escape,60 gordon2,140 kimIvtCov,59 mccoy,53 nextstrainFreq,274 nextstrainSamples,803 nextstrainSamples,926 pbm,69 poranHla1,79 poranHla1,137 poranHla2,79 poranHla2,137 primers,104 pyle,272 rappuoli,60 rosettaMhc,49 sarsCov2Phylo,876 sarsCov2PhyloPub,982 strainCons119way,2004 strainCons44way,1599 unipCov2AliSwissprot,346 unipCov2Chain,576 unipCov2DisulfBond,572 unipCov2Domain,571 unipCov2Interest,252 unipCov2LocCytopl,571 unipCov2LocExtra,571 unipCov2LocSignal,572 unipCov2LocTransMemb,572 unipCov2Modif,575 unipCov2Mut,572 unipCov2Other,572 unipCov2Repeat,570 unipCov2Struct,574 vaccines,436 hg vaccines,348 hg38 cas13Crispr,332 hgdownload.soe.ucsc.edu IgG_Z-score-_COVID-19_patients,371 IgM_Z-score-_COVID-19_patients,371 artic,154 articV4,154 articV4_1,167 bpmIggCovidSum,380 bpmIgmCovidSum,380 cas13Crispr,439 contacts,367 cpgIslandExt,576 cpgIslandExtUnmasked,579 cpgIslandSuper,576 icshape,156 kimRnaMod,201 kimTranscripts,418 ncbiGeneBGP,135 ncbiProducts,151 nextstrainFreq,245 nextstrainSamples,787 pbm,380 phyloGenes,415 poranHla1,228 poranHla2,228 rapid,308 swift,237 transcriptome,424 unipCov2AliSwissprot,365 unipCov2Chain,595 unipCov2DisulfBond,591 unipCov2Domain,590 unipCov2Interest,271 unipCov2LocCytopl,590 unipCov2LocExtra,590 unipCov2LocSignal,591 unipCov2LocTransMemb,591 unipCov2Modif,594 unipCov2Mut,591 unipCov2Other,591 unipCov2Repeat,589 unipCov2Struct,593 vaccines,373 vaccines,397 varskip,160 hidden PhyloCSF_smooth,435 PhyloCSFpower,450 augustusGene,324 kimNp,69 multiz7way,987 multiz7way,1084 strainCons119way,174 strainCons119way,2365 strainCons119way,2462 strainCons44way,122 strainCons44way,1960 strainCons44way,2057 treangen,73 treangen,314 unipCov2Chain,108 unipCov2DisulfBond,104 unipCov2Domain,103 unipCov2LocCytopl,103 unipCov2LocExtra,103 unipCov2LocSignal,104 unipCov2LocTransMemb,104 unipCov2Modif,107 unipCov2Mut,104 unipCov2Other,104 unipCov2Repeat,102 unipCov2Struct,106 high IgG_Z-score-_COVID-19_patients,117 IgM_Z-score-_COVID-19_patients,117 PhyloCSF_smooth,40 PhyloCSFpower,55 bpmIggCovidSum,126 bpmIgmCovidSum,126 epitopes,235 epitopes,259 epitopes,290 gc5BaseBw,29 gordon2,71 gordon2,145 microdel,86 microdel,239 nextstrainParsimony,215 nextstrainSamples,497 pbm,126 pbmShanghai,183 potPathoIndel,74 potPathoIndel,123 potPathoIndel,198 problematicSites,240 problematicSites,376 pyle,105 strainCons119way,1954 strainCons44way,1549 high-affinity rosettaMhc,80 high-confidence PhyloCSF_smooth,756 PhyloCSFpower,735 high-coverage sarsCov2Phylo,10 sarsCov2Phylo,575 sarsCov2PhyloPub,600 variantMuts,806 high-quality Q0_tracks,40 Q1_tracks,42 Q2_tracks,42 Q3_tracks,42 galaxyEna,42 galaxyEnaQ0Ba-1,38 galaxyEnaQ0Ba-1-1,38 galaxyEnaQ0Ba-1-1-11,38 galaxyEnaQ0Ba-1-17,38 galaxyEnaQ0Ba-2,38 galaxyEnaQ1Ay-4,38 galaxyEnaQ1Ay-4-2,38 galaxyEnaQ1Ay-4-2-2,38 galaxyEnaQ1Ay-43,38 galaxyEnaQ1Ba-1-17,38 galaxyEnaQ2Ay-120,38 galaxyEnaQ2Ay-122,38 galaxyEnaQ2Ay-4,38 galaxyEnaQ2Ay-5,38 galaxyEnaQ2Ay-6,38 galaxyEnaQ3Ay-4,38 galaxyEnaQ3Ay-5,38 galaxyEnaQ3Ay-9,38 galaxyEnaQ3B-1-1-7,38 galaxyEnaQ3B-1-617-2,38 high-resolution rosettaMhc,60 high-scoring multiz7way,675 strainCons119way,1024 strainCons44way,972 high-throughput PhyloCSF_smooth,111 PhyloCSFpower,126 higher PhyloCSF_smooth,358 PhyloCSFpower,373 abEscape,364 bloomEscMabAvg,368 bloomEscMax,374 bloomEscSerumAvg,369 bloomEscTop,372 cd8escape,58 cpgIslandExt,157 cpgIslandExtUnmasked,160 cpgIslandSuper,157 escape,371 mccoy,364 multiz7way,145 rappuoli,371 strainCons119way,494 strainCons44way,442 highest crisprDet,133 recomb,221 highlight gc5BaseBw,49 nextstrainSamples,346 sarsCov2Phylo,350 sarsCov2PhyloPub,361 spikeMuts,249 highlighted IgG_Z-score-_COVID-19_patients,91 IgM_Z-score-_COVID-19_patients,91 artic,37 articV4,40 articV4_1,51 bpmIggCovidSum,100 bpmIgmCovidSum,100 contacts,47 contacts,79 contacts,139 pbm,100 pbmShanghai,157 rapid,164 resist,68 swift,101 unipCov2Chain,389 unipCov2DisulfBond,385 unipCov2Domain,384 unipCov2Interest,3 unipCov2LocCytopl,384 unipCov2LocExtra,384 unipCov2LocSignal,385 unipCov2LocTransMemb,385 unipCov2Modif,388 unipCov2Mut,385 unipCov2Other,385 unipCov2Repeat,383 unipCov2Struct,387 varskip,37 highlights unipCov2Interest,1 highly abEscape,895 bloomEscMabAvg,899 bloomEscMax,905 bloomEscSerumAvg,900 bloomEscTop,903 cas13Crispr,33 escape,902 gordon2,122 mccoy,895 rappuoli,902 highly-conserved strainCons119way,1944 strainCons44way,1539 highly_ambiguous problematicSites,235 highly_homoplasic problematicSites,252 hill sarsCov2Phylo,941 sarsCov2PhyloPub,1061 variantMuts,1248 hillier cpgIslandExt,601 cpgIslandExtUnmasked,604 cpgIslandSuper,601 multiz7way,1052 strainCons119way,2430 strainCons44way,2025 hilton Starr_Bloom,242 Starr_Bloom_bind,236 abEscape,737 bloomEscMabAvg,741 bloomEscMax,747 bloomEscSerumAvg,742 bloomEscTop,745 escape,744 mccoy,737 rappuoli,744 hinder cd8escape,73 hinrichs multiz7way,1042 multiz7way,1130 problematicSites,593 recomb,326 sarsCov2Phylo,1104 sarsCov2PhyloPub,1222 strainCons119way,2420 strainCons119way,2508 strainCons44way,2015 strainCons44way,2103 variantMuts,1239 hinsley variantMuts,1336 hiram gc5BaseBw,82 multiz7way,916 strainCons119way,2294 strainCons44way,1889 ucscToINSDC,51 ucscToRefSeq,45 vaccines,642 histories Q0_tracks,1002 Q0_tracks,1005 Q0_tracks,1024 Q1_tracks,1004 Q1_tracks,1007 Q1_tracks,1026 Q2_tracks,1004 Q2_tracks,1007 Q2_tracks,1026 Q3_tracks,1004 Q3_tracks,1007 Q3_tracks,1026 galaxyEna,1004 galaxyEna,1007 galaxyEna,1026 galaxyEnaQ0Ba-1,1000 galaxyEnaQ0Ba-1,1003 galaxyEnaQ0Ba-1,1022 galaxyEnaQ0Ba-1-1,1000 galaxyEnaQ0Ba-1-1,1003 galaxyEnaQ0Ba-1-1,1022 galaxyEnaQ0Ba-1-1-11,1000 galaxyEnaQ0Ba-1-1-11,1003 galaxyEnaQ0Ba-1-1-11,1022 galaxyEnaQ0Ba-1-17,1000 galaxyEnaQ0Ba-1-17,1003 galaxyEnaQ0Ba-1-17,1022 galaxyEnaQ0Ba-2,1000 galaxyEnaQ0Ba-2,1003 galaxyEnaQ0Ba-2,1022 galaxyEnaQ1Ay-4,1000 galaxyEnaQ1Ay-4,1003 galaxyEnaQ1Ay-4,1022 galaxyEnaQ1Ay-4-2,1000 galaxyEnaQ1Ay-4-2,1003 galaxyEnaQ1Ay-4-2,1022 galaxyEnaQ1Ay-4-2-2,1000 galaxyEnaQ1Ay-4-2-2,1003 galaxyEnaQ1Ay-4-2-2,1022 galaxyEnaQ1Ay-43,1000 galaxyEnaQ1Ay-43,1003 galaxyEnaQ1Ay-43,1022 galaxyEnaQ1Ba-1-17,1000 galaxyEnaQ1Ba-1-17,1003 galaxyEnaQ1Ba-1-17,1022 galaxyEnaQ2Ay-120,1000 galaxyEnaQ2Ay-120,1003 galaxyEnaQ2Ay-120,1022 galaxyEnaQ2Ay-122,1000 galaxyEnaQ2Ay-122,1003 galaxyEnaQ2Ay-122,1022 galaxyEnaQ2Ay-4,1000 galaxyEnaQ2Ay-4,1003 galaxyEnaQ2Ay-4,1022 galaxyEnaQ2Ay-5,1000 galaxyEnaQ2Ay-5,1003 galaxyEnaQ2Ay-5,1022 galaxyEnaQ2Ay-6,1000 galaxyEnaQ2Ay-6,1003 galaxyEnaQ2Ay-6,1022 galaxyEnaQ3Ay-4,1000 galaxyEnaQ3Ay-4,1003 galaxyEnaQ3Ay-4,1022 galaxyEnaQ3Ay-5,1000 galaxyEnaQ3Ay-5,1003 galaxyEnaQ3Ay-5,1022 galaxyEnaQ3Ay-9,1000 galaxyEnaQ3Ay-9,1003 galaxyEnaQ3Ay-9,1022 galaxyEnaQ3B-1-1-7,1000 galaxyEnaQ3B-1-1-7,1003 galaxyEnaQ3B-1-1-7,1022 galaxyEnaQ3B-1-617-2,1000 galaxyEnaQ3B-1-617-2,1003 galaxyEnaQ3B-1-617-2,1022 recomb,143 history recomb,117 hits targets,209 hk.3 variantAaMuts_HK_3,2 variantAaMuts_HK_3,6 variantMuts,587 variantMuts,1154 variantNucMuts_HK_3,2 variantNucMuts_HK_3,7 hku primers,146 hku1 multiz7way,718 multiz7way,776 strainCons119way,1367 hku10 strainCons119way,1389 hku11-934 strainCons119way,1364 hku12-600 strainCons119way,1453 hku13-3514 strainCons119way,1405 hku14 strainCons119way,1340 hku15 strainCons119way,1400 hku15-155 strainCons119way,1402 hku16 strainCons119way,1411 hku17 strainCons119way,1397 hku18 strainCons119way,1385 hku19 strainCons119way,1343 hku2 strainCons119way,1463 hku20 strainCons119way,1309 hku21 strainCons119way,1361 hku24 strainCons119way,1315 hku24-r05005i strainCons119way,1317 hku3-1 strainCons44way,1005 hku3-12 strainCons44way,1013 hku3-7 strainCons44way,1009 hku4-1 strainCons119way,1302 hku5-1 strainCons119way,1352 hku8 strainCons119way,1445 hku9-1 strainCons119way,1370 hla epitopes,99 epitopes,110 iedb,92 poranHla1,2 poranHla1,21 poranHla2,2 poranHla2,21 rosettaMhc,139 rosettaMhc,153 hla-a cd8escape,125 cd8escape,158 rosettaMhc,104 rosettaMhc,175 rosettaMhc,282 rosettaMhc,303 hla-b cd8escape,129 cd8escape,162 hla-i poranHla1,5 poranHla1,35 poranHla1,47 poranHla1,105 poranHla2,35 poranHla2,47 poranHla2,105 hla-ii poranHla1,37 poranHla2,5 poranHla2,37 hlgrabner cd8escape,209 hm pdb,134 hmm PhyloCSF_smooth,144 PhyloCSF_smooth,438 PhyloCSF_smooth,548 PhyloCSF_smooth,613 PhyloCSFpower,159 PhyloCSFpower,453 PhyloCSFpower,563 PhyloCSFpower,624 hn pbmShanghai,499 hodcroft sarsCov2Phylo,978 sarsCov2PhyloPub,1098 spikeMuts,360 spikeMuts,396 hoh vaccines,511 holmes sarsCov2Phylo,936 sarsCov2PhyloPub,1056 variantMuts,1243 home vaccines,345 homepage addgene,102 homology epitopes,80 epitopes,260 epitopes,340 homology-based phyloGenes,578 homoplasic problematicSites,257 problematicSites,272 problematicSites,273 problematicSites,421 honeybee1 augustusGene,217 hong primers,150 hongye IgG_Z-score-_COVID-19_patients,402 IgM_Z-score-_COVID-19_patients,402 bpmIggCovidSum,411 bpmIgmCovidSum,411 pbm,411 hoof iedb,105 horizontal nextstrainSamples,356 sarsCov2Phylo,360 sarsCov2PhyloPub,389 hospitalized abEscape,97 bloomEscMabAvg,101 bloomEscMax,107 bloomEscSerumAvg,102 bloomEscTop,105 escape,104 mccoy,97 rappuoli,104 host abEscape,130 abEscape,762 bloomEscMabAvg,134 bloomEscMabAvg,766 bloomEscMax,140 bloomEscMax,772 bloomEscSerumAvg,135 bloomEscSerumAvg,767 bloomEscTop,138 bloomEscTop,770 escape,137 escape,769 icshape,219 mccoy,130 mccoy,762 potPathoIndel,93 rappuoli,137 rappuoli,769 spikeMuts,24 swift,89 treangen,32 vaccines,265 hosted Q0_tracks,231 Q1_tracks,233 Q2_tracks,233 Q3_tracks,233 addgene,263 galaxyEna,233 galaxyEnaQ0Ba-1,229 galaxyEnaQ0Ba-1-1,229 galaxyEnaQ0Ba-1-1-11,229 galaxyEnaQ0Ba-1-17,229 galaxyEnaQ0Ba-2,229 galaxyEnaQ1Ay-4,229 galaxyEnaQ1Ay-4-2,229 galaxyEnaQ1Ay-4-2-2,229 galaxyEnaQ1Ay-43,229 galaxyEnaQ1Ba-1-17,229 galaxyEnaQ2Ay-120,229 galaxyEnaQ2Ay-122,229 galaxyEnaQ2Ay-4,229 galaxyEnaQ2Ay-5,229 galaxyEnaQ2Ay-6,229 galaxyEnaQ3Ay-4,229 galaxyEnaQ3Ay-5,229 galaxyEnaQ3Ay-9,229 galaxyEnaQ3B-1-1-7,229 galaxyEnaQ3B-1-617-2,229 hosts strainCons119way,12 strainCons119way,88 strainCons119wayViewalign,11 strainCons119wayViewphastcons,12 strainCons119wayViewphyloP,12 strainCons44way,12 strainCons44wayViewalign,11 strainCons44wayViewphastcons,13 strainCons44wayViewphyloP,12 strainName44way,12 hotspots microdel,299 hou IgG_Z-score-_COVID-19_patients,409 IgM_Z-score-_COVID-19_patients,409 bpmIggCovidSum,418 bpmIgmCovidSum,418 multiz7way,831 multiz7way,1044 pbm,418 strainCons119way,2209 strainCons119way,2422 strainCons44way,1804 strainCons44way,2017 hours Calu3_07hpi,107 Calu3_07hpi,114 Calu3_07hpi,269 ORFs,105 ORFs,112 ORFs,267 Vero6_05hpi,107 Vero6_05hpi,114 Vero6_05hpi,269 Vero6_24hpi,107 Vero6_24hpi,114 Vero6_24hpi,269 weizmanOrfs,113 weizmanOrfs,120 weizmanOrfs,275 housekeeping cpgIslandExt,22 cpgIslandExtUnmasked,25 cpgIslandSuper,22 houston treangen,99 treangen,122 treangen,212 hovering Q0_tracks,543 Q1_tracks,545 Q2_tracks,545 Q3_tracks,545 galaxyEna,545 galaxyEnaQ0Ba-1,541 galaxyEnaQ0Ba-1-1,541 galaxyEnaQ0Ba-1-1-11,541 galaxyEnaQ0Ba-1-17,541 galaxyEnaQ0Ba-2,541 galaxyEnaQ1Ay-4,541 galaxyEnaQ1Ay-4-2,541 galaxyEnaQ1Ay-4-2-2,541 galaxyEnaQ1Ay-43,541 galaxyEnaQ1Ba-1-17,541 galaxyEnaQ2Ay-120,541 galaxyEnaQ2Ay-122,541 galaxyEnaQ2Ay-4,541 galaxyEnaQ2Ay-5,541 galaxyEnaQ2Ay-6,541 galaxyEnaQ3Ay-4,541 galaxyEnaQ3Ay-5,541 galaxyEnaQ3Ay-9,541 galaxyEnaQ3B-1-1-7,541 galaxyEnaQ3B-1-617-2,541 how iedb,69 problematicSites,66 unipCov2AliSwissprot,32 however Q0_tracks,771 Q1_tracks,773 Q2_tracks,773 Q3_tracks,773 cpgIslandExt,96 cpgIslandExtUnmasked,99 cpgIslandSuper,96 epitopes,199 galaxyEna,773 galaxyEnaQ0Ba-1,769 galaxyEnaQ0Ba-1-1,769 galaxyEnaQ0Ba-1-1-11,769 galaxyEnaQ0Ba-1-17,769 galaxyEnaQ0Ba-2,769 galaxyEnaQ1Ay-4,769 galaxyEnaQ1Ay-4-2,769 galaxyEnaQ1Ay-4-2-2,769 galaxyEnaQ1Ay-43,769 galaxyEnaQ1Ba-1-17,769 galaxyEnaQ2Ay-120,769 galaxyEnaQ2Ay-122,769 galaxyEnaQ2Ay-4,769 galaxyEnaQ2Ay-5,769 galaxyEnaQ2Ay-6,769 galaxyEnaQ3Ay-4,769 galaxyEnaQ3Ay-5,769 galaxyEnaQ3Ay-9,769 galaxyEnaQ3B-1-1-7,769 galaxyEnaQ3B-1-617-2,769 nextstrainParsimony,171 nextstrainSamples,516 strainCons119way,1769 strainCons44way,1364 hp-betacov strainCons119way,1327 hpi Calu3_07hpi,247 ORFs,245 Vero6_05hpi,247 Vero6_24hpi,247 weizmanOrfs,253 hsp_threshold multiz7way,592 strainCons119way,942 strainCons44way,890 http IgG_Z-score-_COVID-19_patients,370 IgM_Z-score-_COVID-19_patients,370 artic,153 articV4,153 articV4_1,166 bpmIggCovidSum,379 bpmIgmCovidSum,379 cas13Crispr,438 contacts,366 cpgIslandExt,575 cpgIslandExtUnmasked,578 cpgIslandSuper,575 icshape,121 kimRnaMod,200 kimTranscripts,417 ncbiGeneBGP,134 ncbiProducts,150 nextstrainFreq,210 nextstrainFreq,244 pbm,379 phyloGenes,414 poranHla1,227 poranHla2,227 publicAnnots,25 rapid,307 strainCons119way,2001 strainCons44way,1596 swift,236 transcriptome,423 unipCov2AliSwissprot,364 unipCov2Chain,594 unipCov2DisulfBond,590 unipCov2Domain,589 unipCov2Interest,270 unipCov2LocCytopl,589 unipCov2LocExtra,589 unipCov2LocSignal,590 unipCov2LocTransMemb,590 unipCov2Modif,593 unipCov2Mut,590 unipCov2Other,590 unipCov2Repeat,588 unipCov2Struct,592 varskip,159 https addgene,265 cas13Crispr,121 epitopes,347 icshape,155 microdel,210 microdel,307 ncbiGeneBGP,35 ncbiProducts,38 nextstrainClade,88 nextstrainSamples,786 problematicSites,112 problematicSites,451 problematicSites,492 pyle,273 rfam,181 rnaStructRangan,38 rosettaMhc,118 sarsCov2Phylo,926 vaccines,372 vaccines,396 hu IgG_Z-score-_COVID-19_patients,418 IgM_Z-score-_COVID-19_patients,418 bpmIggCovidSum,427 bpmIgmCovidSum,427 pbm,427 strainCons119way,1125 strainCons119way,1130 hu-1 nextstrainSamples,871 sarsCov2Phylo,603 sarsCov2PhyloPub,630 sarsCov2PhyloPub,792 huang icshape,190 hub PhyloCSFpower,19 phyloGenes,483 hub2013 strainCons119way,1455 strainCons44way,1019 hubert vaccines,90 vaccines,530 hubisz multiz7way,1011 strainCons119way,2389 strainCons44way,1984 huddleston abEscape,739 bloomEscMabAvg,743 bloomEscMax,749 bloomEscSerumAvg,744 bloomEscTop,747 escape,746 mccoy,739 nextstrainClade,248 nextstrainFreq,383 nextstrainGene,197 nextstrainParsimony,450 nextstrainSamples,1003 rappuoli,746 hughes variantMuts,1494 hum unipCov2AliSwissprot,499 unipCov2Chain,728 unipCov2DisulfBond,724 unipCov2Domain,723 unipCov2Interest,382 unipCov2LocCytopl,723 unipCov2LocExtra,723 unipCov2LocSignal,724 unipCov2LocTransMemb,724 unipCov2Modif,727 unipCov2Mut,724 unipCov2Other,724 unipCov2Repeat,722 unipCov2Struct,726 human PhyloCSF_smooth,286 PhyloCSF_smooth,757 PhyloCSFpower,301 PhyloCSFpower,736 abEscape,718 augustusGene,205 augustusGene,210 augustusGene,276 bloomEscMabAvg,722 bloomEscMax,728 bloomEscSerumAvg,723 bloomEscTop,726 cas13Crispr,68 cas13Crispr,135 cas13Crispr,319 cas13Crispr,330 cas13Crispr,343 crisprDet,76 epitopes,155 escape,725 genscan,217 gordon2,3 gordon2,52 gordon2,63 gordon2,77 gordon2,104 gordon2,202 mccoy,718 multiz7way,1 multiz7way,11 multiz7way,23 multiz7way,1147 potPathoIndel,110 potPathoIndel,154 potPathoIndel,174 potPathoIndel,188 potPathoIndel,228 rappuoli,725 strainCons119way,14 strainCons119way,1099 strainCons119way,1104 strainCons119way,1138 strainCons119way,1151 strainCons119way,1170 strainCons119way,1179 strainCons119way,1184 strainCons119way,1196 strainCons119way,1201 strainCons119way,1207 strainCons119way,1240 strainCons119way,1245 strainCons119way,1260 strainCons119way,1265 strainCons119way,2525 strainCons119wayViewalign,13 strainCons119wayViewphastcons,14 strainCons119wayViewphyloP,14 strainCons44way,2120 swift,88 treangen,92 unipCov2AliSwissprot,219 unipCov2AliSwissprot,496 unipCov2Chain,725 unipCov2DisulfBond,721 unipCov2Domain,720 unipCov2Interest,379 unipCov2LocCytopl,720 unipCov2LocExtra,720 unipCov2LocSignal,721 unipCov2LocTransMemb,721 unipCov2Modif,724 unipCov2Mut,721 unipCov2Other,721 unipCov2Repeat,719 unipCov2Struct,723 vaccines,579 human-mouse multiz7way,1261 strainCons119way,2639 strainCons44way,2234 humans potPathoIndel,98 hunt PhyloCSF_smooth,736 PhyloCSFpower,702 huston pyle,65 pyle,278 hw pbmShanghai,501 hyeshik kimNp,108 kimRnaMod,233 hypermutable problematicSites,42 problematicSites,267 hypothesis strainCons119way,367 strainCons44way,315 hz-1 strainCons119way,1064 i I_102Max,2 I_102Total,2 I_102Total,11 I_26Max,2 I_26Total,2 I_26Total,11 PhyloCSF_smooth,706 PhyloCSF_smooth,735 PhyloCSF_smooth,782 PhyloCSFpower,675 PhyloCSFpower,701 PhyloCSFpower,757 Q0_tracks,1246 Q1_tracks,1248 Q2_tracks,1248 Q3_tracks,1248 abEscape,872 abEscape,886 abEscape,891 bloomEscMabAvg,876 bloomEscMabAvg,890 bloomEscMabAvg,895 bloomEscMax,882 bloomEscMax,896 bloomEscMax,901 bloomEscSerumAvg,877 bloomEscSerumAvg,891 bloomEscSerumAvg,896 bloomEscTop,880 bloomEscTop,894 bloomEscTop,899 cd8escape,37 escape,879 escape,893 escape,898 galaxyEna,1248 galaxyEnaQ0Ba-1,1244 galaxyEnaQ0Ba-1-1,1244 galaxyEnaQ0Ba-1-1-11,1244 galaxyEnaQ0Ba-1-17,1244 galaxyEnaQ0Ba-2,1244 galaxyEnaQ1Ay-4,1244 galaxyEnaQ1Ay-4-2,1244 galaxyEnaQ1Ay-4-2-2,1244 galaxyEnaQ1Ay-43,1244 galaxyEnaQ1Ba-1-17,1244 galaxyEnaQ2Ay-120,1244 galaxyEnaQ2Ay-122,1244 galaxyEnaQ2Ay-4,1244 galaxyEnaQ2Ay-5,1244 galaxyEnaQ2Ay-6,1244 galaxyEnaQ3Ay-4,1244 galaxyEnaQ3Ay-5,1244 galaxyEnaQ3Ay-9,1244 galaxyEnaQ3B-1-1-7,1244 galaxyEnaQ3B-1-617-2,1244 iedb,20 iedb,106 mccoy,872 mccoy,886 mccoy,891 phyloGenes,496 phyloGenes,524 phyloGenes,549 phyloGenes,588 poranHla1,3 potPathoIndel,213 rappuoli,879 rappuoli,893 rappuoli,898 variantMuts,1493 i-004 strainCons119way,1157 i.e PhyloCSF_smooth,191 PhyloCSFpower,206 Q0_tracks,793 Q0_tracks,1015 Q1_tracks,795 Q1_tracks,1017 Q2_tracks,795 Q2_tracks,1017 Q3_tracks,795 Q3_tracks,1017 galaxyEna,795 galaxyEna,1017 galaxyEnaQ0Ba-1,791 galaxyEnaQ0Ba-1,1013 galaxyEnaQ0Ba-1-1,791 galaxyEnaQ0Ba-1-1,1013 galaxyEnaQ0Ba-1-1-11,791 galaxyEnaQ0Ba-1-1-11,1013 galaxyEnaQ0Ba-1-17,791 galaxyEnaQ0Ba-1-17,1013 galaxyEnaQ0Ba-2,791 galaxyEnaQ0Ba-2,1013 galaxyEnaQ1Ay-4,791 galaxyEnaQ1Ay-4,1013 galaxyEnaQ1Ay-4-2,791 galaxyEnaQ1Ay-4-2,1013 galaxyEnaQ1Ay-4-2-2,791 galaxyEnaQ1Ay-4-2-2,1013 galaxyEnaQ1Ay-43,791 galaxyEnaQ1Ay-43,1013 galaxyEnaQ1Ba-1-17,791 galaxyEnaQ1Ba-1-17,1013 galaxyEnaQ2Ay-120,791 galaxyEnaQ2Ay-120,1013 galaxyEnaQ2Ay-122,791 galaxyEnaQ2Ay-122,1013 galaxyEnaQ2Ay-4,791 galaxyEnaQ2Ay-4,1013 galaxyEnaQ2Ay-5,791 galaxyEnaQ2Ay-5,1013 galaxyEnaQ2Ay-6,791 galaxyEnaQ2Ay-6,1013 galaxyEnaQ3Ay-4,791 galaxyEnaQ3Ay-4,1013 galaxyEnaQ3Ay-5,791 galaxyEnaQ3Ay-5,1013 galaxyEnaQ3Ay-9,791 galaxyEnaQ3Ay-9,1013 galaxyEnaQ3B-1-1-7,791 galaxyEnaQ3B-1-1-7,1013 galaxyEnaQ3B-1-617-2,791 galaxyEnaQ3B-1-617-2,1013 pond,165 pond,178 sarsCov2Phylo,111 sarsCov2PhyloPub,124 strainCons119way,1912 strainCons119way,2030 strainCons44way,1507 strainCons44way,1625 i275-82 PhyloCSF_smooth,727 i275-i282 PhyloCSFpower,693 phyloGenes,514 i_102 I_102Max,10 i_26 I_26Max,10 i_bind_avg I_bind_avg,1 i_expr_avg I_expr_avg_Expression,1 icshape icshape,1 icshape,4 icshape,15 icshape,27 icshape,72 icshape,91 icshape,160 icshapeInvitro,1 icshapeInvitro,3 icshapeInvivo,1 icshapeInvivo,3 icshapeinvitro icshape,128 id poranHla1,93 poranHla1,121 poranHla2,93 poranHla2,121 identical contacts,53 targets,165 transcriptome,202 vaccines,137 identifed variantNucMuts_BA_2,10 variantNucMuts_BA_2_12_1,10 variantNucMuts_BA_2_75,10 variantNucMuts_BA_2_86,10 variantNucMuts_BA_4,10 variantNucMuts_BA_5,10 variantNucMuts_BQ_1,10 variantNucMuts_B_1_1_529,12 variantNucMuts_CH_1_1,10 variantNucMuts_EG_5_1,10 variantNucMuts_HK_3,10 variantNucMuts_JN_1,10 variantNucMuts_XBB,10 variantNucMuts_XBB_1_16,10 variantNucMuts_XBB_1_5,10 variantNucMuts_XBB_1_5_70,10 variantNucMuts_XBB_1_9,10 variantNucMuts_XBB_2_3,10 identification epitopes,280 identified cas13Crispr,234 cd8escape,99 epitopes,141 epitopes,251 epitopes,267 kimTranscripts,256 potPathoIndel,190 problematicSites,96 sarsCov2Phylo,615 sarsCov2PhyloPub,642 spikeMuts,79 spikeMuts,96 spikeMuts,272 strainCons119way,154 strainCons119way,765 strainCons44way,102 strainCons44way,713 targets,191 targets,215 transcriptome,250 transcriptome,259 variantMuts,70 variantMuts,170 identifier Q0_tracks,165 Q1_tracks,167 Q2_tracks,167 Q3_tracks,167 addgene,129 galaxyEna,167 galaxyEnaQ0Ba-1,163 galaxyEnaQ0Ba-1-1,163 galaxyEnaQ0Ba-1-1-11,163 galaxyEnaQ0Ba-1-17,163 galaxyEnaQ0Ba-2,163 galaxyEnaQ1Ay-4,163 galaxyEnaQ1Ay-4-2,163 galaxyEnaQ1Ay-4-2-2,163 galaxyEnaQ1Ay-43,163 galaxyEnaQ1Ba-1-17,163 galaxyEnaQ2Ay-120,163 galaxyEnaQ2Ay-122,163 galaxyEnaQ2Ay-4,163 galaxyEnaQ2Ay-5,163 galaxyEnaQ2Ay-6,163 galaxyEnaQ3Ay-4,163 galaxyEnaQ3Ay-5,163 galaxyEnaQ3Ay-9,163 galaxyEnaQ3B-1-1-7,163 galaxyEnaQ3B-1-617-2,163 multiz7way,84 identifiers gordon2,200 nextstrainSamples,482 primers,235 sarsCov2Phylo,512 sarsCov2PhyloPub,541 spikeMuts,223 strainCons119way,419 strainCons44way,367 ucscToRefSeq,19 identifies abEscape,812 bloomEscMabAvg,816 bloomEscMax,822 bloomEscSerumAvg,817 bloomEscTop,820 escape,819 icshape,218 mccoy,812 nextstrainClade,134 nextstrainSamples,171 pond,276 rappuoli,819 identify PhyloCSF_smooth,19 PhyloCSFpower,34 cd8escape,146 gordon2,62 pond,77 problematicSites,54 problematicSites,417 identifying cpgIslandExt,249 cpgIslandExtUnmasked,252 cpgIslandSuper,249 nextstrainParsimony,236 recomb,178 identity cas13Crispr,162 cas13Crispr,191 cas13Crispr,248 multiz7way,131 multiz7way,148 multiz7way,157 multiz7way,167 pdb,118 strainCons119way,480 strainCons119way,497 strainCons119way,506 strainCons119way,516 strainCons44way,428 strainCons44way,445 strainCons44way,454 strainCons44way,464 ideogram cytoBandIdeo,3 cytoBandIdeo,4 iedb epitopes,1 epitopes,37 epitopes,221 iedb,4 iedb,8 iedb,37 iedb,61 iedb,84 iedb-predicted epitopes,3 if PhyloCSF_smooth,684 PhyloCSFpower,650 Starr_Bloom,109 Starr_Bloom,118 Starr_Bloom_bind,103 Starr_Bloom_bind,112 gap,76 multiz7way,368 multiz7way,383 multiz7way,420 multiz7way,507 multiz7way,533 nextstrainFreq,313 nextstrainParsimony,133 nextstrainSamples,139 nextstrainSamples,959 phyloGenes,475 pond,57 primers,220 problematicSites,264 publicAnnots,82 sarsCov2Phylo,419 sarsCov2Phylo,429 sarsCov2Phylo,443 sarsCov2Phylo,909 sarsCov2PhyloPub,448 sarsCov2PhyloPub,458 sarsCov2PhyloPub,472 sarsCov2PhyloPub,1015 spikeMuts,148 spikeMuts,229 strainCons119way,710 strainCons119way,725 strainCons119way,760 strainCons119way,857 strainCons119way,883 strainCons44way,658 strainCons44way,673 strainCons44way,708 strainCons44way,805 strainCons44way,831 transcriptome,219 treangen,218 ifn-gamma cd8escape,65 igg IgG_Z-score-_COVID-19_patients,1 IgG_Z-score-_COVID-19_patients,9 IgG_Z-score-_COVID-19_patients,52 IgM_Z-score-_COVID-19_patients,52 bpmIggCovidSum,5 bpmIggCovidSum,15 bpmIggCovidSum,61 bpmIgmCovidSum,61 igg,2 igg,9 iggAllSum,2 iggAllSum,11 pbm,61 pbmShanghai,61 pbmShanghai,117 pbmShanghai,142 igg_z-score-_covid-19_patients IgG_Z-score-_COVID-19_patients,375 IgM_Z-score-_COVID-19_patients,375 bpmIggCovidSum,384 bpmIgmCovidSum,384 pbm,384 igm IgG_Z-score-_COVID-19_patients,54 IgM_Z-score-_COVID-19_patients,1 IgM_Z-score-_COVID-19_patients,9 IgM_Z-score-_COVID-19_patients,54 bpmIggCovidSum,63 bpmIgmCovidSum,5 bpmIgmCovidSum,15 bpmIgmCovidSum,63 igm,2 igm,9 igmAllSum,2 igmAllSum,11 pbm,63 pbmShanghai,63 pbmShanghai,119 pbmShanghai,144 ignoring strainCons119way,217 strainCons44way,165 ii poranHla2,3 ii215-25 augustusGene,338 il2 strainCons119way,1259 ilbay vaccines,499 illumina Q0_tracks,114 Q0_tracks,847 Q1_tracks,116 Q1_tracks,849 Q2_tracks,116 Q2_tracks,849 Q3_tracks,116 Q3_tracks,849 galaxyEna,116 galaxyEna,849 galaxyEnaQ0Ba-1,112 galaxyEnaQ0Ba-1,845 galaxyEnaQ0Ba-1-1,112 galaxyEnaQ0Ba-1-1,845 galaxyEnaQ0Ba-1-1-11,112 galaxyEnaQ0Ba-1-1-11,845 galaxyEnaQ0Ba-1-17,112 galaxyEnaQ0Ba-1-17,845 galaxyEnaQ0Ba-2,112 galaxyEnaQ0Ba-2,845 galaxyEnaQ1Ay-4,112 galaxyEnaQ1Ay-4,845 galaxyEnaQ1Ay-4-2,112 galaxyEnaQ1Ay-4-2,845 galaxyEnaQ1Ay-4-2-2,112 galaxyEnaQ1Ay-4-2-2,845 galaxyEnaQ1Ay-43,112 galaxyEnaQ1Ay-43,845 galaxyEnaQ1Ba-1-17,112 galaxyEnaQ1Ba-1-17,845 galaxyEnaQ2Ay-120,112 galaxyEnaQ2Ay-120,845 galaxyEnaQ2Ay-122,112 galaxyEnaQ2Ay-122,845 galaxyEnaQ2Ay-4,112 galaxyEnaQ2Ay-4,845 galaxyEnaQ2Ay-5,112 galaxyEnaQ2Ay-5,845 galaxyEnaQ2Ay-6,112 galaxyEnaQ2Ay-6,845 galaxyEnaQ3Ay-4,112 galaxyEnaQ3Ay-4,845 galaxyEnaQ3Ay-5,112 galaxyEnaQ3Ay-5,845 galaxyEnaQ3Ay-9,112 galaxyEnaQ3Ay-9,845 galaxyEnaQ3B-1-1-7,112 galaxyEnaQ3B-1-1-7,845 galaxyEnaQ3B-1-617-2,112 galaxyEnaQ3B-1-617-2,845 image abEscape,433 bloomEscMabAvg,437 bloomEscMax,443 bloomEscSerumAvg,438 bloomEscTop,441 escape,440 mccoy,433 multiz7way,904 rappuoli,440 sarsCov2Phylo,96 sarsCov2Phylo,563 sarsCov2PhyloPub,109 sarsCov2PhyloPub,588 strainCons119way,2282 strainCons44way,1877 imm pbmShanghai,17 immediately cpgIslandExt,48 cpgIslandExtUnmasked,51 cpgIslandSuper,48 immun cd8escape,14 immune epitopes,17 epitopes,73 epitopes,145 epitopes,156 epitopes,197 epitopes,206 epitopes,215 epitopes,298 epitopes,333 iedb,34 iedb,116 rosettaMhc,47 immunity microdel,234 immunogenicity rosettaMhc,160 immunol cd8escape,224 pbmShanghai,530 immunology A_120Max,11 A_120Total,14 A_21Max,11 A_21Total,14 A_45Max,11 A_45Total,14 A_bind_avg,7 A_expr_avg_Expression,7 B_113Max,11 B_113Total,14 B_26Max,11 B_26Total,14 COV2-2050Max,10 COV2-2050Total,10 COV2-2082Max,10 COV2-2082Total,10 COV2-2094Max,10 COV2-2094Total,10 COV2-2096Max,10 COV2-2096Total,10 COV2-2165Max,10 COV2-2165Total,10 COV2-2479Max,10 COV2-2479Total,10 COV2-2499Max,10 COV2-2499Total,10 COV2-2677Max,10 COV2-2677Total,10 COV2-2832Max,10 COV2-2832Total,10 C_104Max,11 C_104Total,14 C_32Max,11 C_32Total,14 C_bind_avg,7 C_expr_avg_Expression,7 D_33Max,11 D_33Total,14 D_76Max,11 D_76Total,14 D_bind_avg,7 D_expr_avg_Expression,7 E_104Max,11 E_104Total,14 E_28Max,11 E_28Total,14 E_bind_avg,7 E_expr_avg_Expression,7 F_115Max,11 F_115Total,14 F_48Max,11 F_48Total,14 F_bind_avg,7 F_expr_avg_Expression,7 G_18Max,11 G_18Total,14 G_94Max,11 G_94Total,14 G_bind_avg,7 G_expr_avg_Expression,7 H_152Max,11 H_152Total,14 H_61Max,11 H_61Total,14 H_bind_avg,7 H_expr_avg_Expression,7 I_102Max,11 I_102Total,14 I_26Max,11 I_26Total,14 I_bind_avg,7 I_expr_avg_Expression,7 IgG_Z-score-_COVID-19_patients,13 IgM_Z-score-_COVID-19_patients,13 IgM_Z-score-_COVID-19_patients_P1,3 IgM_Z-score-_COVID-19_patients_P10,3 IgM_Z-score-_COVID-19_patients_P11,3 IgM_Z-score-_COVID-19_patients_P15,3 IgM_Z-score-_COVID-19_patients_P32,3 IgM_Z-score-_COVID-19_patients_P33,3 IgM_Z-score-_COVID-19_patients_P4,3 IgM_Z-score-_COVID-19_patients_P45,3 IgM_Z-score-_COVID-19_patients_P52,3 IgM_Z-score-_COVID-19_patients_P6,3 J_121Max,11 J_121Total,14 J_15Max,11 J_15Total,14 K_103Max,11 K_103Total,14 K_29Max,11 K_29Total,14 K_bind_avg,7 K_expr_avg_Expression,7 LY-CoV016Max,10 LY-CoV016Total,10 L_bind_avg,7 L_expr_avg_Expression,7 M1_library,13 M2_library,13 M_bind_avg,7 M_expr_avg_Expression,7 N_bind_avg,7 N_expr_avg_Expression,7 P1,3 P10,3 P11,3 P15,3 P32,3 P33,3 P4,3 P45,3 P52,3 P6,3 P_bind_avg,7 P_expr_avg_Expression,7 Q_bind_avg,7 Q_expr_avg_Expression,7 REGN10933-REGN10987Max,10 REGN10933-REGN10987Total,10 REGN10933Max,10 REGN10933Total,10 REGN10987Max,10 REGN10987Total,10 R_bind_avg,7 R_expr_avg_Expression,7 S_bind_avg,7 S_expr_avg_Expression,7 Starr_Bloom,14 Starr_Bloom_bind,15 T_bind_avg,7 T_expr_avg_Expression,7 V_bind_avg,7 V_expr_avg_Expression,7 W_bind_avg,7 W_expr_avg_Expression,7 Y_bind_avg,7 Y_expr_avg_Expression,7 abEscape,14 bCellEpitopes,6 bloomEscMabAvg,18 bloomEscMax,24 bloomEscSerumAvg,19 bloomEscTop,22 bloomEscTotal,24 bpmIggCovidSum,22 bpmIgmCovidSum,22 cd4Epitopes,6 cd8Epitopes,6 cd8escape,16 epitopes,10 escape,21 iedb,9 igg,16 iggAllSum,14 igg_COVID_11,5 igg_COVID_12,5 igg_COVID_13,5 igg_COVID_14,5 igg_COVID_15,5 igg_COVID_16,5 igg_COVID_17,5 igg_COVID_18,5 igg_COVID_19,5 igg_COVID_401,5 igg_COVID_4021,5 igg_COVID_4022,5 igg_COVID_404,5 igg_COVID_405,5 igg_COVID_406,5 igg_COVID_407,5 igg_COVID_408,5 igg_COVID_409,5 igg_COVID_410,5 igg_COVID_414,5 igg_COVID_415,5 igg_COVID_416,5 igg_COVID_419,5 igg_COVID_429,5 igg_COVID_432,5 igg_COVID_436,5 igg_COVID_4371,5 igg_COVID_4372,5 igg_COVID_501,5 igg_COVID_502,5 igg_COVID_508,5 igg_COVID_509,5 igg_COVID_510,5 igg_COVID_520,5 igg_COVID_522,5 igg_COVID_5222,5 igg_COVID_523,5 igg_COVID_526,5 igg_COVID_527,5 igg_COVID_528,5 igg_COVID_529,5 igg_COVID_530,5 igg_COVID_531,5 igg_COVID_532,5 igg_COVID_533,5 igg_COVID_5333,5 igg_COVID_534,5 igg_COVID_535,5 igg_COVID_605,5 igg_COVID_607,5 igg_COVID_608,5 igg_COVID_610,5 igg_COVID_727,5 igg_COVID_730,5 igg_COVID_744,5 igg_Ctrl_LC168,5 igg_Ctrl_LC169,5 igg_Ctrl_LC171,5 igg_Ctrl_LC174,5 igg_Ctrl_LC175,5 igg_Ctrl_LC177,5 igg_Ctrl_LC180,5 igg_Ctrl_LC181,5 igg_Ctrl_LC182,5 igg_Ctrl_NC63,5 igg_Ctrl_NC64,5 igg_Ctrl_NC65,5 igg_Ctrl_NC66,5 igg_Ctrl_NC67,5 igg_Ctrl_NC95,5 igg_Ctrl_NC96,5 igg_Ctrl_NC97,5 igg_Ctrl_NC98,5 igm,16 igmAllSum,14 igm_COVID_11,5 igm_COVID_12,5 igm_COVID_13,5 igm_COVID_14,5 igm_COVID_15,5 igm_COVID_16,5 igm_COVID_17,5 igm_COVID_18,5 igm_COVID_19,5 igm_COVID_401,5 igm_COVID_4021,5 igm_COVID_4022,5 igm_COVID_404,5 igm_COVID_405,5 igm_COVID_406,5 igm_COVID_407,5 igm_COVID_408,5 igm_COVID_409,5 igm_COVID_410,5 igm_COVID_414,5 igm_COVID_415,5 igm_COVID_416,5 igm_COVID_419,5 igm_COVID_429,5 igm_COVID_432,5 igm_COVID_436,5 igm_COVID_4371,5 igm_COVID_4372,5 igm_COVID_501,5 igm_COVID_502,5 igm_COVID_508,5 igm_COVID_509,5 igm_COVID_510,5 igm_COVID_520,5 igm_COVID_522,5 igm_COVID_5222,5 igm_COVID_523,5 igm_COVID_526,5 igm_COVID_527,5 igm_COVID_528,5 igm_COVID_529,5 igm_COVID_530,5 igm_COVID_531,5 igm_COVID_532,5 igm_COVID_533,5 igm_COVID_5333,5 igm_COVID_534,5 igm_COVID_535,5 igm_COVID_605,5 igm_COVID_607,5 igm_COVID_608,5 igm_COVID_610,5 igm_COVID_727,5 igm_COVID_730,5 igm_COVID_744,5 igm_Ctrl_LC168,5 igm_Ctrl_LC169,5 igm_Ctrl_LC171,5 igm_Ctrl_LC174,5 igm_Ctrl_LC175,5 igm_Ctrl_LC177,5 igm_Ctrl_LC180,5 igm_Ctrl_LC181,5 igm_Ctrl_LC182,5 igm_Ctrl_NC63,5 igm_Ctrl_NC64,5 igm_Ctrl_NC65,5 igm_Ctrl_NC66,5 igm_Ctrl_NC67,5 igm_Ctrl_NC95,5 igm_Ctrl_NC96,5 igm_Ctrl_NC97,5 igm_Ctrl_NC98,5 mccoy,14 pbm,22 pbmShanghai,25 poranHla1,7 poranHla2,7 rCR3022Max,10 rCR3022Total,10 rappuoli,21 rosettaMhc,10 targets,10 vaccines,10 vaccines,588 impact PhyloCSF_smooth,797 PhyloCSFpower,774 mccoy,7 nextstrainFreq,297 nextstrainSamples,949 phyloGenes,600 pond,124 pond,288 sarsCov2Phylo,899 sarsCov2PhyloPub,1005 variantMuts,159 imperfect simpleRepeat,19 implicated Negative_Selection,7 Positive_Selection,7 implications treangen,78 treangen,319 important nextstrainFreq,282 nextstrainSamples,934 problematicSites,52 rosettaMhc,32 sarsCov2Phylo,884 sarsCov2PhyloPub,990 strainCons119way,301 strainCons44way,249 importantly targets,48 imported abEscape,55 bloomEscMabAvg,59 bloomEscMax,65 bloomEscSerumAvg,60 bloomEscTop,63 escape,62 mccoy,55 rappuoli,62 resistPred,72 improve augustusGene,302 improved multiz7way,1232 strainCons119way,2610 strainCons44way,2205 improvement recomb,224 improvements sarsCov2Phylo,1032 sarsCov2PhyloPub,1152 in Calu3_07hpi,127 Calu3_07hpi,195 Calu3_07hpi,300 Calu3_07hpi,323 Entropy,8 IgG_Z-score-_COVID-19_patients,62 IgG_Z-score-_COVID-19_patients,173 IgG_Z-score-_COVID-19_patients,276 IgG_Z-score-_COVID-19_patients,299 IgG_Z-score-_COVID-19_patients,312 IgM_Z-score-_COVID-19_patients,62 IgM_Z-score-_COVID-19_patients,173 IgM_Z-score-_COVID-19_patients,276 IgM_Z-score-_COVID-19_patients,299 IgM_Z-score-_COVID-19_patients,312 Negative_Selection,8 ORFs,125 ORFs,193 ORFs,298 ORFs,321 PhyloCSF_smooth,136 PhyloCSF_smooth,146 PhyloCSF_smooth,160 PhyloCSF_smooth,202 PhyloCSF_smooth,214 PhyloCSF_smooth,285 PhyloCSF_smooth,305 PhyloCSF_smooth,311 PhyloCSF_smooth,338 PhyloCSF_smooth,341 PhyloCSF_smooth,369 PhyloCSF_smooth,379 PhyloCSF_smooth,393 PhyloCSF_smooth,399 PhyloCSF_smooth,572 PhyloCSF_smooth,595 PhyloCSF_smooth,606 PhyloCSF_smooth,641 PhyloCSFpower,151 PhyloCSFpower,161 PhyloCSFpower,175 PhyloCSFpower,217 PhyloCSFpower,229 PhyloCSFpower,300 PhyloCSFpower,320 PhyloCSFpower,326 PhyloCSFpower,353 PhyloCSFpower,356 PhyloCSFpower,384 PhyloCSFpower,396 PhyloCSFpower,408 PhyloCSFpower,414 PhyloCSFpower,587 PhyloCSFpower,610 PhyloCSFpower,617 Positive_Selection,8 Q0_tracks,4 Q0_tracks,48 Q0_tracks,297 Q0_tracks,359 Q0_tracks,375 Q0_tracks,441 Q0_tracks,454 Q0_tracks,469 Q0_tracks,548 Q0_tracks,567 Q0_tracks,576 Q0_tracks,597 Q0_tracks,600 Q0_tracks,616 Q0_tracks,624 Q0_tracks,654 Q0_tracks,674 Q0_tracks,686 Q0_tracks,720 Q0_tracks,724 Q0_tracks,739 Q0_tracks,751 Q0_tracks,800 Q0_tracks,815 Q0_tracks,871 Q0_tracks,881 Q0_tracks,912 Q0_tracks,915 Q0_tracks,940 Q0_tracks,1085 Q0_tracks,1095 Q0_tracks,1167 Q0_tracks,1203 Q0_tracks,1206 Q1_tracks,4 Q1_tracks,50 Q1_tracks,299 Q1_tracks,361 Q1_tracks,377 Q1_tracks,443 Q1_tracks,456 Q1_tracks,471 Q1_tracks,550 Q1_tracks,569 Q1_tracks,578 Q1_tracks,599 Q1_tracks,602 Q1_tracks,618 Q1_tracks,626 Q1_tracks,656 Q1_tracks,676 Q1_tracks,688 Q1_tracks,722 Q1_tracks,726 Q1_tracks,741 Q1_tracks,753 Q1_tracks,802 Q1_tracks,817 Q1_tracks,873 Q1_tracks,883 Q1_tracks,914 Q1_tracks,917 Q1_tracks,942 Q1_tracks,1087 Q1_tracks,1097 Q1_tracks,1169 Q1_tracks,1205 Q1_tracks,1208 Q2_tracks,4 Q2_tracks,50 Q2_tracks,299 Q2_tracks,361 Q2_tracks,377 Q2_tracks,443 Q2_tracks,456 Q2_tracks,471 Q2_tracks,550 Q2_tracks,569 Q2_tracks,578 Q2_tracks,599 Q2_tracks,602 Q2_tracks,618 Q2_tracks,626 Q2_tracks,656 Q2_tracks,676 Q2_tracks,688 Q2_tracks,722 Q2_tracks,726 Q2_tracks,741 Q2_tracks,753 Q2_tracks,802 Q2_tracks,817 Q2_tracks,873 Q2_tracks,883 Q2_tracks,914 Q2_tracks,917 Q2_tracks,942 Q2_tracks,1087 Q2_tracks,1097 Q2_tracks,1169 Q2_tracks,1205 Q2_tracks,1208 Q3_tracks,4 Q3_tracks,50 Q3_tracks,299 Q3_tracks,361 Q3_tracks,377 Q3_tracks,443 Q3_tracks,456 Q3_tracks,471 Q3_tracks,550 Q3_tracks,569 Q3_tracks,578 Q3_tracks,599 Q3_tracks,602 Q3_tracks,618 Q3_tracks,626 Q3_tracks,656 Q3_tracks,676 Q3_tracks,688 Q3_tracks,722 Q3_tracks,726 Q3_tracks,741 Q3_tracks,753 Q3_tracks,802 Q3_tracks,817 Q3_tracks,873 Q3_tracks,883 Q3_tracks,914 Q3_tracks,917 Q3_tracks,942 Q3_tracks,1087 Q3_tracks,1097 Q3_tracks,1169 Q3_tracks,1205 Q3_tracks,1208 Starr_Bloom,29 Starr_Bloom,103 Starr_Bloom,215 Starr_Bloom_bind,30 Starr_Bloom_bind,97 Starr_Bloom_bind,209 Vero6_05hpi,127 Vero6_05hpi,195 Vero6_05hpi,300 Vero6_05hpi,323 Vero6_24hpi,127 Vero6_24hpi,195 Vero6_24hpi,300 Vero6_24hpi,323 abEscape,40 abEscape,78 abEscape,93 abEscape,108 abEscape,125 abEscape,148 abEscape,181 abEscape,200 abEscape,208 abEscape,225 abEscape,285 abEscape,306 abEscape,403 abEscape,462 abEscape,667 abEscape,888 addgene,19 addgene,49 addgene,85 artic,82 artic,95 articV4,82 articV4,95 articV4_1,95 articV4_1,108 augustusGene,101 bloomEscMabAvg,44 bloomEscMabAvg,82 bloomEscMabAvg,97 bloomEscMabAvg,112 bloomEscMabAvg,129 bloomEscMabAvg,152 bloomEscMabAvg,185 bloomEscMabAvg,204 bloomEscMabAvg,212 bloomEscMabAvg,229 bloomEscMabAvg,289 bloomEscMabAvg,310 bloomEscMabAvg,407 bloomEscMabAvg,466 bloomEscMabAvg,671 bloomEscMabAvg,892 bloomEscMax,50 bloomEscMax,88 bloomEscMax,103 bloomEscMax,118 bloomEscMax,135 bloomEscMax,158 bloomEscMax,191 bloomEscMax,210 bloomEscMax,218 bloomEscMax,235 bloomEscMax,295 bloomEscMax,316 bloomEscMax,413 bloomEscMax,472 bloomEscMax,677 bloomEscMax,898 bloomEscSerumAvg,45 bloomEscSerumAvg,83 bloomEscSerumAvg,98 bloomEscSerumAvg,113 bloomEscSerumAvg,130 bloomEscSerumAvg,153 bloomEscSerumAvg,186 bloomEscSerumAvg,205 bloomEscSerumAvg,213 bloomEscSerumAvg,230 bloomEscSerumAvg,290 bloomEscSerumAvg,311 bloomEscSerumAvg,408 bloomEscSerumAvg,467 bloomEscSerumAvg,672 bloomEscSerumAvg,893 bloomEscTop,48 bloomEscTop,86 bloomEscTop,101 bloomEscTop,116 bloomEscTop,133 bloomEscTop,156 bloomEscTop,189 bloomEscTop,208 bloomEscTop,216 bloomEscTop,233 bloomEscTop,293 bloomEscTop,314 bloomEscTop,411 bloomEscTop,470 bloomEscTop,675 bloomEscTop,896 bpmIggCovidSum,71 bpmIggCovidSum,182 bpmIggCovidSum,285 bpmIggCovidSum,308 bpmIggCovidSum,321 bpmIgmCovidSum,71 bpmIgmCovidSum,182 bpmIgmCovidSum,285 bpmIgmCovidSum,308 bpmIgmCovidSum,321 cas13Crispr,26 cas13Crispr,66 cas13Crispr,134 cas13Crispr,317 cas13Crispr,367 cas13Crispr,380 cas13Crispr,482 cd8escape,45 cd8escape,70 cd8escape,104 cd8escape,133 cd8escape,182 cd8escape,215 contacts,7 contacts,29 contacts,185 contacts,195 contacts,202 contacts,234 contacts,249 contacts,295 contacts,308 cpgIslandExt,24 cpgIslandExt,58 cpgIslandExt,64 cpgIslandExt,87 cpgIslandExt,180 cpgIslandExt,189 cpgIslandExt,214 cpgIslandExt,297 cpgIslandExt,341 cpgIslandExt,375 cpgIslandExt,610 cpgIslandExtUnmasked,27 cpgIslandExtUnmasked,61 cpgIslandExtUnmasked,67 cpgIslandExtUnmasked,90 cpgIslandExtUnmasked,183 cpgIslandExtUnmasked,192 cpgIslandExtUnmasked,217 cpgIslandExtUnmasked,300 cpgIslandExtUnmasked,344 cpgIslandExtUnmasked,378 cpgIslandExtUnmasked,613 cpgIslandSuper,24 cpgIslandSuper,58 cpgIslandSuper,64 cpgIslandSuper,87 cpgIslandSuper,180 cpgIslandSuper,189 cpgIslandSuper,214 cpgIslandSuper,297 cpgIslandSuper,341 cpgIslandSuper,375 cpgIslandSuper,610 crisprDet,63 epitopes,112 epitopes,245 epitopes,255 escape,47 escape,85 escape,100 escape,115 escape,132 escape,155 escape,188 escape,207 escape,215 escape,232 escape,292 escape,313 escape,410 escape,469 escape,674 escape,895 galaxyEna,50 galaxyEna,299 galaxyEna,361 galaxyEna,377 galaxyEna,443 galaxyEna,456 galaxyEna,471 galaxyEna,550 galaxyEna,569 galaxyEna,578 galaxyEna,599 galaxyEna,602 galaxyEna,618 galaxyEna,626 galaxyEna,656 galaxyEna,676 galaxyEna,688 galaxyEna,722 galaxyEna,726 galaxyEna,741 galaxyEna,753 galaxyEna,802 galaxyEna,817 galaxyEna,873 galaxyEna,883 galaxyEna,914 galaxyEna,917 galaxyEna,942 galaxyEna,1087 galaxyEna,1097 galaxyEna,1169 galaxyEna,1205 galaxyEna,1208 galaxyEnaQ0Ba-1,7 galaxyEnaQ0Ba-1,46 galaxyEnaQ0Ba-1,295 galaxyEnaQ0Ba-1,357 galaxyEnaQ0Ba-1,373 galaxyEnaQ0Ba-1,439 galaxyEnaQ0Ba-1,452 galaxyEnaQ0Ba-1,467 galaxyEnaQ0Ba-1,546 galaxyEnaQ0Ba-1,565 galaxyEnaQ0Ba-1,574 galaxyEnaQ0Ba-1,595 galaxyEnaQ0Ba-1,598 galaxyEnaQ0Ba-1,614 galaxyEnaQ0Ba-1,622 galaxyEnaQ0Ba-1,652 galaxyEnaQ0Ba-1,672 galaxyEnaQ0Ba-1,684 galaxyEnaQ0Ba-1,718 galaxyEnaQ0Ba-1,722 galaxyEnaQ0Ba-1,737 galaxyEnaQ0Ba-1,749 galaxyEnaQ0Ba-1,798 galaxyEnaQ0Ba-1,813 galaxyEnaQ0Ba-1,869 galaxyEnaQ0Ba-1,879 galaxyEnaQ0Ba-1,910 galaxyEnaQ0Ba-1,913 galaxyEnaQ0Ba-1,938 galaxyEnaQ0Ba-1,1083 galaxyEnaQ0Ba-1,1093 galaxyEnaQ0Ba-1,1165 galaxyEnaQ0Ba-1,1201 galaxyEnaQ0Ba-1,1204 galaxyEnaQ0Ba-1-1,7 galaxyEnaQ0Ba-1-1,46 galaxyEnaQ0Ba-1-1,295 galaxyEnaQ0Ba-1-1,357 galaxyEnaQ0Ba-1-1,373 galaxyEnaQ0Ba-1-1,439 galaxyEnaQ0Ba-1-1,452 galaxyEnaQ0Ba-1-1,467 galaxyEnaQ0Ba-1-1,546 galaxyEnaQ0Ba-1-1,565 galaxyEnaQ0Ba-1-1,574 galaxyEnaQ0Ba-1-1,595 galaxyEnaQ0Ba-1-1,598 galaxyEnaQ0Ba-1-1,614 galaxyEnaQ0Ba-1-1,622 galaxyEnaQ0Ba-1-1,652 galaxyEnaQ0Ba-1-1,672 galaxyEnaQ0Ba-1-1,684 galaxyEnaQ0Ba-1-1,718 galaxyEnaQ0Ba-1-1,722 galaxyEnaQ0Ba-1-1,737 galaxyEnaQ0Ba-1-1,749 galaxyEnaQ0Ba-1-1,798 galaxyEnaQ0Ba-1-1,813 galaxyEnaQ0Ba-1-1,869 galaxyEnaQ0Ba-1-1,879 galaxyEnaQ0Ba-1-1,910 galaxyEnaQ0Ba-1-1,913 galaxyEnaQ0Ba-1-1,938 galaxyEnaQ0Ba-1-1,1083 galaxyEnaQ0Ba-1-1,1093 galaxyEnaQ0Ba-1-1,1165 galaxyEnaQ0Ba-1-1,1201 galaxyEnaQ0Ba-1-1,1204 galaxyEnaQ0Ba-1-1-11,7 galaxyEnaQ0Ba-1-1-11,46 galaxyEnaQ0Ba-1-1-11,295 galaxyEnaQ0Ba-1-1-11,357 galaxyEnaQ0Ba-1-1-11,373 galaxyEnaQ0Ba-1-1-11,439 galaxyEnaQ0Ba-1-1-11,452 galaxyEnaQ0Ba-1-1-11,467 galaxyEnaQ0Ba-1-1-11,546 galaxyEnaQ0Ba-1-1-11,565 galaxyEnaQ0Ba-1-1-11,574 galaxyEnaQ0Ba-1-1-11,595 galaxyEnaQ0Ba-1-1-11,598 galaxyEnaQ0Ba-1-1-11,614 galaxyEnaQ0Ba-1-1-11,622 galaxyEnaQ0Ba-1-1-11,652 galaxyEnaQ0Ba-1-1-11,672 galaxyEnaQ0Ba-1-1-11,684 galaxyEnaQ0Ba-1-1-11,718 galaxyEnaQ0Ba-1-1-11,722 galaxyEnaQ0Ba-1-1-11,737 galaxyEnaQ0Ba-1-1-11,749 galaxyEnaQ0Ba-1-1-11,798 galaxyEnaQ0Ba-1-1-11,813 galaxyEnaQ0Ba-1-1-11,869 galaxyEnaQ0Ba-1-1-11,879 galaxyEnaQ0Ba-1-1-11,910 galaxyEnaQ0Ba-1-1-11,913 galaxyEnaQ0Ba-1-1-11,938 galaxyEnaQ0Ba-1-1-11,1083 galaxyEnaQ0Ba-1-1-11,1093 galaxyEnaQ0Ba-1-1-11,1165 galaxyEnaQ0Ba-1-1-11,1201 galaxyEnaQ0Ba-1-1-11,1204 galaxyEnaQ0Ba-1-17,7 galaxyEnaQ0Ba-1-17,46 galaxyEnaQ0Ba-1-17,295 galaxyEnaQ0Ba-1-17,357 galaxyEnaQ0Ba-1-17,373 galaxyEnaQ0Ba-1-17,439 galaxyEnaQ0Ba-1-17,452 galaxyEnaQ0Ba-1-17,467 galaxyEnaQ0Ba-1-17,546 galaxyEnaQ0Ba-1-17,565 galaxyEnaQ0Ba-1-17,574 galaxyEnaQ0Ba-1-17,595 galaxyEnaQ0Ba-1-17,598 galaxyEnaQ0Ba-1-17,614 galaxyEnaQ0Ba-1-17,622 galaxyEnaQ0Ba-1-17,652 galaxyEnaQ0Ba-1-17,672 galaxyEnaQ0Ba-1-17,684 galaxyEnaQ0Ba-1-17,718 galaxyEnaQ0Ba-1-17,722 galaxyEnaQ0Ba-1-17,737 galaxyEnaQ0Ba-1-17,749 galaxyEnaQ0Ba-1-17,798 galaxyEnaQ0Ba-1-17,813 galaxyEnaQ0Ba-1-17,869 galaxyEnaQ0Ba-1-17,879 galaxyEnaQ0Ba-1-17,910 galaxyEnaQ0Ba-1-17,913 galaxyEnaQ0Ba-1-17,938 galaxyEnaQ0Ba-1-17,1083 galaxyEnaQ0Ba-1-17,1093 galaxyEnaQ0Ba-1-17,1165 galaxyEnaQ0Ba-1-17,1201 galaxyEnaQ0Ba-1-17,1204 galaxyEnaQ0Ba-2,7 galaxyEnaQ0Ba-2,46 galaxyEnaQ0Ba-2,295 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kimIvtCov,153 kimNp,72 kimRnaMod,65 kimRnaMod,129 kimRnaMod,142 kimTranscripts,6 kimTranscripts,54 kimTranscripts,115 kimTranscripts,146 kimTranscripts,346 kimTranscripts,359 mccoy,40 mccoy,78 mccoy,93 mccoy,108 mccoy,125 mccoy,148 mccoy,181 mccoy,200 mccoy,208 mccoy,225 mccoy,285 mccoy,306 mccoy,403 mccoy,462 mccoy,667 mccoy,888 microdel,3 microdel,18 microdel,41 microdel,49 microdel,57 microdel,154 microdel,294 multiz7way,49 multiz7way,59 multiz7way,112 multiz7way,119 multiz7way,126 multiz7way,138 multiz7way,149 multiz7way,181 multiz7way,186 multiz7way,189 multiz7way,203 multiz7way,208 multiz7way,244 multiz7way,261 multiz7way,354 multiz7way,373 multiz7way,416 multiz7way,433 multiz7way,480 multiz7way,499 multiz7way,661 multiz7way,666 multiz7way,791 multiz7way,801 multiz7way,855 multiz7way,995 multiz7way,1061 multiz7way,1087 multiz7way,1093 multiz7way,1143 ncbiGeneBGP,64 ncbiProducts,80 nextstrainClade,22 nextstrainClade,49 nextstrainClade,72 nextstrainClade,144 nextstrainFreq,20 nextstrainFreq,49 nextstrainFreq,127 nextstrainGene,20 nextstrainGene,45 nextstrainGene,74 nextstrainParsimony,23 nextstrainParsimony,33 nextstrainParsimony,66 nextstrainParsimony,200 nextstrainSamples,20 nextstrainSamples,30 nextstrainSamples,60 nextstrainSamples,113 nextstrainSamples,119 nextstrainSamples,146 nextstrainSamples,165 nextstrainSamples,206 nextstrainSamples,246 nextstrainSamples,264 nextstrainSamples,273 nextstrainSamples,283 nextstrainSamples,303 nextstrainSamples,321 nextstrainSamples,343 nextstrainSamples,354 nextstrainSamples,377 nextstrainSamples,397 nextstrainSamples,468 nextstrainSamples,521 nextstrainSamples,546 nextstrainSamples,622 nextstrainSamples,864 nextstrainSamples,992 nextstrainSamples19A,4 nextstrainSamples19B,4 nextstrainSamples20A,4 nextstrainSamples20B,4 nextstrainSamples20C,4 nextstrainSamples20D,4 nextstrainSamples20F,4 nextstrainSamples20G,4 nextstrainSamples21A_Delta,5 nextstrainSamples21B_Kappa,5 nextstrainSamples21D_Eta,5 nextstrainSamples21E_Theta,5 nextstrainSamples21F_Iota,5 nextstrainSamples21G_Lambda,5 nextstrainSamples21H_Mu,5 nextstrainSamples21I_Delta,5 nextstrainSamples21J_Delta,5 nextstrainSamplesAll,3 nextstrainSamplesRb,6 pbm,71 pbm,182 pbm,285 pbm,308 pbm,321 pbmShanghai,101 pbmShanghai,138 pbmShanghai,206 pbmShanghai,215 pbmShanghai,270 pbmShanghai,294 pbmShanghai,402 pbmShanghai,425 pbmShanghai,438 pbmShanghai,525 pdb,24 pdb,146 phyloGenes,41 phyloGenes,52 phyloGenes,105 phyloGenes,131 phyloGenes,207 phyloGenes,230 phyloGenes,298 phyloGenes,308 phyloGenes,343 phyloGenes,356 phyloGenes,454 phyloGenes,539 phyloGenes,573 pond,37 pond,82 pond,225 pond,282 poranHla1,156 poranHla1,169 poranHla2,156 poranHla2,169 potPathoIndel,58 potPathoIndel,63 potPathoIndel,82 potPathoIndel,161 potPathoIndel,168 potPathoIndel,224 primers,20 primers,53 primers,167 primers,275 problematicSites,44 problematicSites,89 problematicSites,108 problematicSites,217 problematicSites,227 problematicSites,297 problematicSites,318 problematicSites,330 problematicSites,338 problematicSites,391 problematicSites,430 problematicSites,478 publicAnnots,55 pyle,55 pyle,57 pyle,168 rapid,130 rapid,138 rapid,146 rapid,185 rapid,206 rapid,212 rapid,236 rapid,249 rappuoli,47 rappuoli,85 rappuoli,100 rappuoli,115 rappuoli,132 rappuoli,155 rappuoli,188 rappuoli,207 rappuoli,215 rappuoli,232 rappuoli,292 rappuoli,313 rappuoli,410 rappuoli,469 rappuoli,674 rappuoli,895 recomb,43 recomb,92 recomb,219 resist,108 resistPred,200 resistPred,265 rfam,171 rnaStructRangan,22 rnaStructRangan,68 rnaStructRangan,75 rnaStructRangan,116 rosettaMhc,39 rosettaMhc,68 rosettaMhc,161 rosettaMhc,193 rosettaMhc,216 rosettaMhc,308 rosettaMhc,337 rosettaMhc,357 sarsCov2Phylo,9 sarsCov2Phylo,12 sarsCov2Phylo,37 sarsCov2Phylo,49 sarsCov2Phylo,64 sarsCov2Phylo,84 sarsCov2Phylo,98 sarsCov2Phylo,308 sarsCov2Phylo,326 sarsCov2Phylo,347 sarsCov2Phylo,358 sarsCov2Phylo,381 sarsCov2Phylo,401 sarsCov2Phylo,417 sarsCov2Phylo,498 sarsCov2Phylo,538 sarsCov2Phylo,639 sarsCov2Phylo,740 sarsCov2Phylo,767 sarsCov2Phylo,788 sarsCov2Phylo,1002 sarsCov2Phylo,1033 sarsCov2Phylo,1159 sarsCov2PhyloFull,7 sarsCov2PhyloMinAf001,13 sarsCov2PhyloMinAf01,13 sarsCov2PhyloPub,9 sarsCov2PhyloPub,11 sarsCov2PhyloPub,51 sarsCov2PhyloPub,63 sarsCov2PhyloPub,78 sarsCov2PhyloPub,97 sarsCov2PhyloPub,111 sarsCov2PhyloPub,315 sarsCov2PhyloPub,333 sarsCov2PhyloPub,358 sarsCov2PhyloPub,387 sarsCov2PhyloPub,410 sarsCov2PhyloPub,430 sarsCov2PhyloPub,446 sarsCov2PhyloPub,527 sarsCov2PhyloPub,563 sarsCov2PhyloPub,663 sarsCov2PhyloPub,764 sarsCov2PhyloPub,824 sarsCov2PhyloPub,1036 sarsCov2PhyloPub,1122 sarsCov2PhyloPub,1153 sarsCov2PhyloPub,1292 sarsCov2PhyloPubAllFull,9 sarsCov2PhyloPubAllMinAf001,12 sarsCov2PhyloPubAllMinAf01,12 spikeMuts,38 spikeMuts,65 spikeMuts,97 spikeMuts,118 spikeMuts,234 spikeMuts,252 spikeMuts,267 spikeMuts,273 spikeMuts,277 spikeMuts,289 strainCons119way,21 strainCons119way,79 strainCons119way,142 strainCons119way,160 strainCons119way,168 strainCons119way,324 strainCons119way,339 strainCons119way,353 strainCons119way,400 strainCons119way,461 strainCons119way,468 strainCons119way,475 strainCons119way,487 strainCons119way,498 strainCons119way,530 strainCons119way,535 strainCons119way,538 strainCons119way,552 strainCons119way,557 strainCons119way,593 strainCons119way,610 strainCons119way,654 strainCons119way,696 strainCons119way,715 strainCons119way,756 strainCons119way,783 strainCons119way,830 strainCons119way,849 strainCons119way,1010 strainCons119way,1015 strainCons119way,1663 strainCons119way,1765 strainCons119way,1812 strainCons119way,1889 strainCons119way,1963 strainCons119way,2163 strainCons119way,2176 strainCons119way,2233 strainCons119way,2373 strainCons119way,2439 strainCons119way,2465 strainCons119way,2471 strainCons119way,2521 strainCons44way,18 strainCons44way,90 strainCons44way,108 strainCons44way,116 strainCons44way,272 strainCons44way,287 strainCons44way,301 strainCons44way,348 strainCons44way,409 strainCons44way,416 strainCons44way,423 strainCons44way,435 strainCons44way,446 strainCons44way,478 strainCons44way,483 strainCons44way,486 strainCons44way,500 strainCons44way,505 strainCons44way,541 strainCons44way,558 strainCons44way,602 strainCons44way,644 strainCons44way,663 strainCons44way,704 strainCons44way,731 strainCons44way,778 strainCons44way,797 strainCons44way,958 strainCons44way,963 strainCons44way,1258 strainCons44way,1360 strainCons44way,1407 strainCons44way,1484 strainCons44way,1558 strainCons44way,1758 strainCons44way,1771 strainCons44way,1828 strainCons44way,1968 strainCons44way,2034 strainCons44way,2060 strainCons44way,2066 strainCons44way,2116 strainCons44way,2253 swift,80 swift,122 swift,165 swift,178 targets,6 targets,27 targets,88 targets,97 targets,146 targets,160 targets,210 targets,226 targets,240 transcriptome,46 transcriptome,107 transcriptome,132 transcriptome,177 transcriptome,193 transcriptome,232 transcriptome,260 transcriptome,352 transcriptome,365 treangen,68 treangen,84 treangen,114 treangen,136 treangen,150 treangen,224 treangen,271 unipCov2AliSwissprot,36 unipCov2AliSwissprot,235 unipCov2AliSwissprot,285 unipCov2AliSwissprot,303 unipCov2Chain,56 unipCov2Chain,127 unipCov2Chain,176 unipCov2Chain,316 unipCov2Chain,320 unipCov2Chain,379 unipCov2Chain,390 unipCov2Chain,395 unipCov2Chain,400 unipCov2Chain,515 unipCov2Chain,533 unipCov2DisulfBond,52 unipCov2DisulfBond,123 unipCov2DisulfBond,172 unipCov2DisulfBond,312 unipCov2DisulfBond,316 unipCov2DisulfBond,375 unipCov2DisulfBond,386 unipCov2DisulfBond,391 unipCov2DisulfBond,396 unipCov2DisulfBond,511 unipCov2DisulfBond,529 unipCov2Domain,51 unipCov2Domain,122 unipCov2Domain,171 unipCov2Domain,311 unipCov2Domain,315 unipCov2Domain,374 unipCov2Domain,385 unipCov2Domain,390 unipCov2Domain,395 unipCov2Domain,510 unipCov2Domain,528 unipCov2Interest,191 unipCov2Interest,209 unipCov2LocCytopl,51 unipCov2LocCytopl,122 unipCov2LocCytopl,171 unipCov2LocCytopl,311 unipCov2LocCytopl,315 unipCov2LocCytopl,374 unipCov2LocCytopl,385 unipCov2LocCytopl,390 unipCov2LocCytopl,395 unipCov2LocCytopl,510 unipCov2LocCytopl,528 unipCov2LocExtra,51 unipCov2LocExtra,122 unipCov2LocExtra,171 unipCov2LocExtra,311 unipCov2LocExtra,315 unipCov2LocExtra,374 unipCov2LocExtra,385 unipCov2LocExtra,390 unipCov2LocExtra,395 unipCov2LocExtra,510 unipCov2LocExtra,528 unipCov2LocSignal,52 unipCov2LocSignal,123 unipCov2LocSignal,172 unipCov2LocSignal,312 unipCov2LocSignal,316 unipCov2LocSignal,375 unipCov2LocSignal,386 unipCov2LocSignal,391 unipCov2LocSignal,396 unipCov2LocSignal,511 unipCov2LocSignal,529 unipCov2LocTransMemb,52 unipCov2LocTransMemb,123 unipCov2LocTransMemb,172 unipCov2LocTransMemb,312 unipCov2LocTransMemb,316 unipCov2LocTransMemb,375 unipCov2LocTransMemb,386 unipCov2LocTransMemb,391 unipCov2LocTransMemb,396 unipCov2LocTransMemb,511 unipCov2LocTransMemb,529 unipCov2Modif,55 unipCov2Modif,126 unipCov2Modif,175 unipCov2Modif,315 unipCov2Modif,319 unipCov2Modif,378 unipCov2Modif,389 unipCov2Modif,394 unipCov2Modif,399 unipCov2Modif,514 unipCov2Modif,532 unipCov2Mut,52 unipCov2Mut,123 unipCov2Mut,172 unipCov2Mut,312 unipCov2Mut,316 unipCov2Mut,375 unipCov2Mut,386 unipCov2Mut,391 unipCov2Mut,396 unipCov2Mut,511 unipCov2Mut,529 unipCov2Other,52 unipCov2Other,123 unipCov2Other,172 unipCov2Other,312 unipCov2Other,316 unipCov2Other,375 unipCov2Other,386 unipCov2Other,391 unipCov2Other,396 unipCov2Other,511 unipCov2Other,529 unipCov2Repeat,50 unipCov2Repeat,121 unipCov2Repeat,170 unipCov2Repeat,310 unipCov2Repeat,314 unipCov2Repeat,373 unipCov2Repeat,384 unipCov2Repeat,389 unipCov2Repeat,394 unipCov2Repeat,509 unipCov2Repeat,527 unipCov2Struct,54 unipCov2Struct,125 unipCov2Struct,174 unipCov2Struct,314 unipCov2Struct,318 unipCov2Struct,377 unipCov2Struct,388 unipCov2Struct,393 unipCov2Struct,398 unipCov2Struct,513 unipCov2Struct,531 vaccines,83 vaccines,91 vaccines,114 vaccines,127 vaccines,149 vaccines,159 vaccines,177 vaccines,200 vaccines,388 vaccines,460 vaccines,587 variantAaMutsV2_B_1_1_7,12 variantAaMutsV2_B_1_351,12 variantAaMutsV2_B_1_429,12 variantAaMutsV2_B_1_525,11 variantAaMutsV2_B_1_526,12 variantAaMutsV2_B_1_617_1,12 variantAaMutsV2_B_1_617_2,12 variantAaMutsV2_B_1_621,12 variantAaMutsV2_C_37,12 variantAaMutsV2_P_1,12 variantMuts,5 variantMuts,33 variantMuts,38 variantMuts,66 variantMuts,127 variantMuts,147 variantMuts,187 variantMuts,201 variantMuts,244 variantMuts,717 variantMuts,732 variantMuts,740 variantMuts,753 variantMuts,762 variantMuts,1129 variantMuts,1148 variantMuts,1160 variantMuts,1309 variantMuts,1352 variantMuts,1390 variantMuts,1406 variantNucMutsV2_B_1_1_7,11 variantNucMutsV2_B_1_351,11 variantNucMutsV2_B_1_429,11 variantNucMutsV2_B_1_525,10 variantNucMutsV2_B_1_526,11 variantNucMutsV2_B_1_617_1,11 variantNucMutsV2_B_1_617_2,11 variantNucMutsV2_B_1_621,11 variantNucMutsV2_C_37,11 variantNucMutsV2_P_1,11 varskip,88 varskip,101 weizmanOrfs,133 weizmanOrfs,201 weizmanOrfs,306 weizmanOrfs,329 windowmaskerSdust,27 in-frame phyloGenes,261 phyloGenes,291 in-silico cas13Crispr,14 cas13Crispr,41 pyle,49 in-vitro icshapeInvitro,2 icshapeInvitro,4 kimIvtCov,33 in-vitro-transcribed kimIvtCov,6 in-vivo icshapeInvivo,2 icshapeInvivo,4 pyle,290 incidence spikeMuts,161 variantMuts,77 include contacts,200 multiz7way,260 potPathoIndel,51 sarsCov2Phylo,784 spikeMuts,263 strainCons119way,609 strainCons44way,557 variantMuts,154 variantMuts,1090 included augustusGene,160 cpgIslandExt,306 cpgIslandExtUnmasked,309 cpgIslandSuper,306 nextstrainFreq,287 nextstrainSamples,939 sarsCov2Phylo,889 sarsCov2PhyloPub,995 treangen,232 treangen,254 windowmaskerSdust,26 includeref nextstrainSamples,867 includes Q0_tracks,203 Q1_tracks,205 Q2_tracks,205 Q3_tracks,205 cd8escape,116 galaxyEna,205 galaxyEnaQ0Ba-1,201 galaxyEnaQ0Ba-1-1,201 galaxyEnaQ0Ba-1-1-11,201 galaxyEnaQ0Ba-1-17,201 galaxyEnaQ0Ba-2,201 galaxyEnaQ1Ay-4,201 galaxyEnaQ1Ay-4-2,201 galaxyEnaQ1Ay-4-2-2,201 galaxyEnaQ1Ay-43,201 galaxyEnaQ1Ba-1-17,201 galaxyEnaQ2Ay-120,201 galaxyEnaQ2Ay-122,201 galaxyEnaQ2Ay-4,201 galaxyEnaQ2Ay-5,201 galaxyEnaQ2Ay-6,201 galaxyEnaQ3Ay-4,201 galaxyEnaQ3Ay-5,201 galaxyEnaQ3Ay-9,201 galaxyEnaQ3B-1-1-7,201 galaxyEnaQ3B-1-617-2,201 gordon2,110 gordon2,141 poranHla1,40 poranHla2,40 rosettaMhc,169 sarsCov2PhyloPub,892 spikeMuts,150 strainCons119way,112 strainCons44way,60 variantMuts,162 including Q0_tracks,862 Q1_tracks,864 Q2_tracks,864 Q3_tracks,864 cas13Crispr,333 epitopes,231 galaxyEna,864 galaxyEnaQ0Ba-1,860 galaxyEnaQ0Ba-1-1,860 galaxyEnaQ0Ba-1-1-11,860 galaxyEnaQ0Ba-1-17,860 galaxyEnaQ0Ba-2,860 galaxyEnaQ1Ay-4,860 galaxyEnaQ1Ay-4-2,860 galaxyEnaQ1Ay-4-2-2,860 galaxyEnaQ1Ay-43,860 galaxyEnaQ1Ba-1-17,860 galaxyEnaQ2Ay-120,860 galaxyEnaQ2Ay-122,860 galaxyEnaQ2Ay-4,860 galaxyEnaQ2Ay-5,860 galaxyEnaQ2Ay-6,860 galaxyEnaQ3Ay-4,860 galaxyEnaQ3Ay-5,860 galaxyEnaQ3Ay-9,860 galaxyEnaQ3B-1-1-7,860 galaxyEnaQ3B-1-617-2,860 nextstrainClade,153 nextstrainSamples,136 pyle,193 rfam,23 strainCons119way,1883 strainCons44way,1478 inclusion treangen,148 incomplete sarsCov2Phylo,796 increase Q0_tracks,763 Q1_tracks,765 Q2_tracks,765 Q3_tracks,765 galaxyEna,765 galaxyEnaQ0Ba-1,761 galaxyEnaQ0Ba-1-1,761 galaxyEnaQ0Ba-1-1-11,761 galaxyEnaQ0Ba-1-17,761 galaxyEnaQ0Ba-2,761 galaxyEnaQ1Ay-4,761 galaxyEnaQ1Ay-4-2,761 galaxyEnaQ1Ay-4-2-2,761 galaxyEnaQ1Ay-43,761 galaxyEnaQ1Ba-1-17,761 galaxyEnaQ2Ay-120,761 galaxyEnaQ2Ay-122,761 galaxyEnaQ2Ay-4,761 galaxyEnaQ2Ay-5,761 galaxyEnaQ2Ay-6,761 galaxyEnaQ3Ay-4,761 galaxyEnaQ3Ay-5,761 galaxyEnaQ3Ay-9,761 galaxyEnaQ3B-1-1-7,761 galaxyEnaQ3B-1-617-2,761 increased Starr_Bloom,134 Starr_Bloom_bind,128 variantMuts,103 increasing IgG_Z-score-_COVID-19_patients,163 IgM_Z-score-_COVID-19_patients,163 bpmIggCovidSum,172 bpmIgmCovidSum,172 nextstrainParsimony,203 pbm,172 indel variantMuts,898 indels microdel,293 potPathoIndel,3 variantMuts,921 independent epitopes,279 independently problematicSites,359 india variantAaMutsV2_B_1_617_1,7 variantAaMutsV2_B_1_617_2,7 variantMuts,327 variantMuts,418 variantMuts,712 variantNucMutsV2_B_1_617_1,7 variantNucMutsV2_B_1_617_2,7 indicate Q0_tracks,514 Q1_tracks,516 Q2_tracks,516 Q3_tracks,516 abEscape,387 bloomEscMabAvg,391 bloomEscMax,397 bloomEscSerumAvg,392 bloomEscTop,395 escape,394 galaxyEna,516 galaxyEnaQ0Ba-1,512 galaxyEnaQ0Ba-1-1,512 galaxyEnaQ0Ba-1-1-11,512 galaxyEnaQ0Ba-1-17,512 galaxyEnaQ0Ba-2,512 galaxyEnaQ1Ay-4,512 galaxyEnaQ1Ay-4-2,512 galaxyEnaQ1Ay-4-2-2,512 galaxyEnaQ1Ay-43,512 galaxyEnaQ1Ba-1-17,512 galaxyEnaQ2Ay-120,512 galaxyEnaQ2Ay-122,512 galaxyEnaQ2Ay-4,512 galaxyEnaQ2Ay-5,512 galaxyEnaQ2Ay-6,512 galaxyEnaQ3Ay-4,512 galaxyEnaQ3Ay-5,512 galaxyEnaQ3Ay-9,512 galaxyEnaQ3B-1-1-7,512 galaxyEnaQ3B-1-617-2,512 kimRnaMod,51 mccoy,387 multiz7way,144 multiz7way,349 problematicSites,175 rappuoli,394 strainCons119way,493 strainCons119way,691 strainCons44way,441 strainCons44way,639 vaccines,147 indicated gordon2,232 multiz7way,406 primers,86 rnaStructRangan,54 strainCons119way,748 strainCons44way,696 indicates Starr_Bloom,133 Starr_Bloom_bind,127 abEscape,366 bloomEscMabAvg,370 bloomEscMax,376 bloomEscSerumAvg,371 bloomEscTop,374 epitopes,15 escape,373 kimIvtCov,73 kimRnaMod,81 mccoy,366 multiz7way,123 pyle,85 pyle,110 rappuoli,373 strainCons119way,472 strainCons44way,420 indicating multiz7way,106 nextstrainFreq,99 nextstrainParsimony,265 strainCons119way,455 strainCons44way,403 indication PhyloCSF_smooth,222 PhyloCSFpower,237 indispensable rnaStructRangan,96 individual iedb,65 nextstrainSamples,564 strainCons119way,200 strainCons119way,215 strainCons119way,242 strainCons119way,1996 strainCons44way,148 strainCons44way,163 strainCons44way,190 strainCons44way,1591 treangen,176 inducing poranHla1,279 poranHla2,279 industry addgene,84 inexpensive rapid,349 infect primers,137 infected Calu3_07hpi,100 Calu3_07hpi,111 Calu3_07hpi,258 ORFs,98 ORFs,109 ORFs,256 Vero6_05hpi,100 Vero6_05hpi,111 Vero6_05hpi,258 Vero6_24hpi,100 Vero6_24hpi,111 Vero6_24hpi,258 cd8escape,26 cd8escape,50 pyle,226 weizmanOrfs,106 weizmanOrfs,117 weizmanOrfs,264 infecting treangen,46 infection microdel,232 pbmShanghai,81 rosettaMhc,166 infections IgG_Z-score-_COVID-19_patients,59 IgM_Z-score-_COVID-19_patients,59 abEscape,104 bloomEscMabAvg,108 bloomEscMax,114 bloomEscSerumAvg,109 bloomEscTop,112 bpmIggCovidSum,68 bpmIgmCovidSum,68 escape,111 mccoy,104 pbm,68 rappuoli,111 infectious iedb,31 strainCons119way,1311 strainCons119way,1480 infectivity spikeMuts,45 infer problematicSites,19 sarsCov2Phylo,650 sarsCov2PhyloPub,674 inference recomb,96 recomb,159 inferences problematicSites,49 infernal rfam,46 inferred contacts,26 recomb,19 recomb,263 sarsCov2Phylo,26 sarsCov2Phylo,75 sarsCov2Phylo,491 sarsCov2PhyloPub,89 sarsCov2PhyloPub,520 infers nextstrainClade,43 nextstrainFreq,43 nextstrainFreq,75 nextstrainGene,39 nextstrainParsimony,60 nextstrainParsimony,92 nextstrainSamples,54 influenza cas13Crispr,520 info nextstrainSamples,972 sarsCov2Phylo,922 information Calu3_07hpi,344 IgG_Z-score-_COVID-19_patients,189 IgG_Z-score-_COVID-19_patients,400 IgM_Z-score-_COVID-19_patients,189 IgM_Z-score-_COVID-19_patients,400 ORFs,342 PhyloCSF_smooth,68 PhyloCSF_smooth,115 PhyloCSF_smooth,669 PhyloCSFpower,83 PhyloCSFpower,130 Q0_tracks,128 Q0_tracks,155 Q0_tracks,161 Q0_tracks,265 Q0_tracks,1014 Q1_tracks,130 Q1_tracks,157 Q1_tracks,163 Q1_tracks,267 Q1_tracks,1016 Q2_tracks,130 Q2_tracks,157 Q2_tracks,163 Q2_tracks,267 Q2_tracks,1016 Q3_tracks,130 Q3_tracks,157 Q3_tracks,163 Q3_tracks,267 Q3_tracks,1016 Starr_Bloom,236 Starr_Bloom_bind,230 Vero6_05hpi,344 Vero6_24hpi,344 abEscape,688 addgene,93 artic,182 articV4,182 articV4_1,195 augustusGene,36 bloomEscMabAvg,692 bloomEscMax,698 bloomEscSerumAvg,693 bloomEscTop,696 bpmIggCovidSum,198 bpmIggCovidSum,409 bpmIgmCovidSum,198 bpmIgmCovidSum,409 cas13Crispr,467 contacts,395 cpgIslandExt,542 cpgIslandExtUnmasked,545 cpgIslandSuper,542 epitopes,152 epitopes,201 escape,695 galaxyEna,130 galaxyEna,157 galaxyEna,163 galaxyEna,267 galaxyEna,1016 galaxyEnaQ0Ba-1,126 galaxyEnaQ0Ba-1,153 galaxyEnaQ0Ba-1,159 galaxyEnaQ0Ba-1,263 galaxyEnaQ0Ba-1,1012 galaxyEnaQ0Ba-1-1,126 galaxyEnaQ0Ba-1-1,153 galaxyEnaQ0Ba-1-1,159 galaxyEnaQ0Ba-1-1,263 galaxyEnaQ0Ba-1-1,1012 galaxyEnaQ0Ba-1-1-11,126 galaxyEnaQ0Ba-1-1-11,153 galaxyEnaQ0Ba-1-1-11,159 galaxyEnaQ0Ba-1-1-11,263 galaxyEnaQ0Ba-1-1-11,1012 galaxyEnaQ0Ba-1-17,126 galaxyEnaQ0Ba-1-17,153 galaxyEnaQ0Ba-1-17,159 galaxyEnaQ0Ba-1-17,263 galaxyEnaQ0Ba-1-17,1012 galaxyEnaQ0Ba-2,126 galaxyEnaQ0Ba-2,153 galaxyEnaQ0Ba-2,159 galaxyEnaQ0Ba-2,263 galaxyEnaQ0Ba-2,1012 galaxyEnaQ1Ay-4,126 galaxyEnaQ1Ay-4,153 galaxyEnaQ1Ay-4,159 galaxyEnaQ1Ay-4,263 galaxyEnaQ1Ay-4,1012 galaxyEnaQ1Ay-4-2,126 galaxyEnaQ1Ay-4-2,153 galaxyEnaQ1Ay-4-2,159 galaxyEnaQ1Ay-4-2,263 galaxyEnaQ1Ay-4-2,1012 galaxyEnaQ1Ay-4-2-2,126 galaxyEnaQ1Ay-4-2-2,153 galaxyEnaQ1Ay-4-2-2,159 galaxyEnaQ1Ay-4-2-2,263 galaxyEnaQ1Ay-4-2-2,1012 galaxyEnaQ1Ay-43,126 galaxyEnaQ1Ay-43,153 galaxyEnaQ1Ay-43,159 galaxyEnaQ1Ay-43,263 galaxyEnaQ1Ay-43,1012 galaxyEnaQ1Ba-1-17,126 galaxyEnaQ1Ba-1-17,153 galaxyEnaQ1Ba-1-17,159 galaxyEnaQ1Ba-1-17,263 galaxyEnaQ1Ba-1-17,1012 galaxyEnaQ2Ay-120,126 galaxyEnaQ2Ay-120,153 galaxyEnaQ2Ay-120,159 galaxyEnaQ2Ay-120,263 galaxyEnaQ2Ay-120,1012 galaxyEnaQ2Ay-122,126 galaxyEnaQ2Ay-122,153 galaxyEnaQ2Ay-122,159 galaxyEnaQ2Ay-122,263 galaxyEnaQ2Ay-122,1012 galaxyEnaQ2Ay-4,126 galaxyEnaQ2Ay-4,153 galaxyEnaQ2Ay-4,159 galaxyEnaQ2Ay-4,263 galaxyEnaQ2Ay-4,1012 galaxyEnaQ2Ay-5,126 galaxyEnaQ2Ay-5,153 galaxyEnaQ2Ay-5,159 galaxyEnaQ2Ay-5,263 galaxyEnaQ2Ay-5,1012 galaxyEnaQ2Ay-6,126 galaxyEnaQ2Ay-6,153 galaxyEnaQ2Ay-6,159 galaxyEnaQ2Ay-6,263 galaxyEnaQ2Ay-6,1012 galaxyEnaQ3Ay-4,126 galaxyEnaQ3Ay-4,153 galaxyEnaQ3Ay-4,159 galaxyEnaQ3Ay-4,263 galaxyEnaQ3Ay-4,1012 galaxyEnaQ3Ay-5,126 galaxyEnaQ3Ay-5,153 galaxyEnaQ3Ay-5,159 galaxyEnaQ3Ay-5,263 galaxyEnaQ3Ay-5,1012 galaxyEnaQ3Ay-9,126 galaxyEnaQ3Ay-9,153 galaxyEnaQ3Ay-9,159 galaxyEnaQ3Ay-9,263 galaxyEnaQ3Ay-9,1012 galaxyEnaQ3B-1-1-7,126 galaxyEnaQ3B-1-1-7,153 galaxyEnaQ3B-1-1-7,159 galaxyEnaQ3B-1-1-7,263 galaxyEnaQ3B-1-1-7,1012 galaxyEnaQ3B-1-617-2,126 galaxyEnaQ3B-1-617-2,153 galaxyEnaQ3B-1-617-2,159 galaxyEnaQ3B-1-617-2,263 galaxyEnaQ3B-1-617-2,1012 gap,34 gc5BaseBw,55 genscan,51 genscan,126 gold,36 icshape,179 kimRnaMod,229 kimTranscripts,447 mccoy,688 microdel,186 multiz7way,300 ncbiGeneBGP,162 ncbiProducts,178 nextstrainClade,78 nextstrainFreq,267 nextstrainSamples,82 nextstrainSamples,191 pbm,198 pbm,409 pbmShanghai,492 phyloGenes,444 poranHla1,126 poranHla1,257 poranHla2,126 poranHla2,257 rapid,336 rappuoli,695 resist,139 resistPred,85 resistPred,231 rfam,176 sarsCov2Phylo,766 simpleRepeat,58 spikeMuts,143 spikeMuts,354 strainCons119way,643 strainCons119way,1957 strainCons44way,591 strainCons44way,1552 swift,265 transcriptome,453 unipCov2AliSwissprot,399 unipCov2AliSwissprot,494 unipCov2Chain,629 unipCov2Chain,723 unipCov2DisulfBond,625 unipCov2DisulfBond,719 unipCov2Domain,624 unipCov2Domain,718 unipCov2Interest,377 unipCov2LocCytopl,624 unipCov2LocCytopl,718 unipCov2LocExtra,624 unipCov2LocExtra,718 unipCov2LocSignal,625 unipCov2LocSignal,719 unipCov2LocTransMemb,625 unipCov2LocTransMemb,719 unipCov2Modif,628 unipCov2Modif,722 unipCov2Mut,625 unipCov2Mut,719 unipCov2Other,625 unipCov2Other,719 unipCov2Repeat,623 unipCov2Repeat,717 unipCov2Struct,627 unipCov2Struct,721 variantMuts,81 varskip,188 weizmanOrfs,350 infrastructure Q0_tracks,54 Q0_tracks,1134 Q0_tracks,1342 Q1_tracks,56 Q1_tracks,1136 Q1_tracks,1344 Q2_tracks,56 Q2_tracks,1136 Q2_tracks,1344 Q3_tracks,56 Q3_tracks,1136 Q3_tracks,1344 galaxyEna,56 galaxyEna,1136 galaxyEna,1344 galaxyEnaQ0Ba-1,52 galaxyEnaQ0Ba-1,1132 galaxyEnaQ0Ba-1,1340 galaxyEnaQ0Ba-1-1,52 galaxyEnaQ0Ba-1-1,1132 galaxyEnaQ0Ba-1-1,1340 galaxyEnaQ0Ba-1-1-11,52 galaxyEnaQ0Ba-1-1-11,1132 galaxyEnaQ0Ba-1-1-11,1340 galaxyEnaQ0Ba-1-17,52 galaxyEnaQ0Ba-1-17,1132 galaxyEnaQ0Ba-1-17,1340 galaxyEnaQ0Ba-2,52 galaxyEnaQ0Ba-2,1132 galaxyEnaQ0Ba-2,1340 galaxyEnaQ1Ay-4,52 galaxyEnaQ1Ay-4,1132 galaxyEnaQ1Ay-4,1340 galaxyEnaQ1Ay-4-2,52 galaxyEnaQ1Ay-4-2,1132 galaxyEnaQ1Ay-4-2,1340 galaxyEnaQ1Ay-4-2-2,52 galaxyEnaQ1Ay-4-2-2,1132 galaxyEnaQ1Ay-4-2-2,1340 galaxyEnaQ1Ay-43,52 galaxyEnaQ1Ay-43,1132 galaxyEnaQ1Ay-43,1340 galaxyEnaQ1Ba-1-17,52 galaxyEnaQ1Ba-1-17,1132 galaxyEnaQ1Ba-1-17,1340 galaxyEnaQ2Ay-120,52 galaxyEnaQ2Ay-120,1132 galaxyEnaQ2Ay-120,1340 galaxyEnaQ2Ay-122,52 galaxyEnaQ2Ay-122,1132 galaxyEnaQ2Ay-122,1340 galaxyEnaQ2Ay-4,52 galaxyEnaQ2Ay-4,1132 galaxyEnaQ2Ay-4,1340 galaxyEnaQ2Ay-5,52 galaxyEnaQ2Ay-5,1132 galaxyEnaQ2Ay-5,1340 galaxyEnaQ2Ay-6,52 galaxyEnaQ2Ay-6,1132 galaxyEnaQ2Ay-6,1340 galaxyEnaQ3Ay-4,52 galaxyEnaQ3Ay-4,1132 galaxyEnaQ3Ay-4,1340 galaxyEnaQ3Ay-5,52 galaxyEnaQ3Ay-5,1132 galaxyEnaQ3Ay-5,1340 galaxyEnaQ3Ay-9,52 galaxyEnaQ3Ay-9,1132 galaxyEnaQ3Ay-9,1340 galaxyEnaQ3B-1-1-7,52 galaxyEnaQ3B-1-1-7,1132 galaxyEnaQ3B-1-1-7,1340 galaxyEnaQ3B-1-617-2,52 galaxyEnaQ3B-1-617-2,1132 galaxyEnaQ3B-1-617-2,1340 inhibitor Calu3_07hpi,177 ORFs,175 Vero6_05hpi,177 Vero6_24hpi,177 resistPred,110 weizmanOrfs,183 initial primers,41 initiation Calu3_07hpi,138 Calu3_07hpi,160 ORFs,136 ORFs,158 Vero6_05hpi,138 Vero6_05hpi,160 Vero6_24hpi,138 Vero6_24hpi,160 weizmanOrfs,144 weizmanOrfs,166 initiative Q0_tracks,1222 Q1_tracks,1224 Q2_tracks,1224 Q3_tracks,1224 galaxyEna,1224 galaxyEnaQ0Ba-1,1220 galaxyEnaQ0Ba-1-1,1220 galaxyEnaQ0Ba-1-1-11,1220 galaxyEnaQ0Ba-1-17,1220 galaxyEnaQ0Ba-2,1220 galaxyEnaQ1Ay-4,1220 galaxyEnaQ1Ay-4-2,1220 galaxyEnaQ1Ay-4-2-2,1220 galaxyEnaQ1Ay-43,1220 galaxyEnaQ1Ba-1-17,1220 galaxyEnaQ2Ay-120,1220 galaxyEnaQ2Ay-122,1220 galaxyEnaQ2Ay-4,1220 galaxyEnaQ2Ay-5,1220 galaxyEnaQ2Ay-6,1220 galaxyEnaQ3Ay-4,1220 galaxyEnaQ3Ay-5,1220 galaxyEnaQ3Ay-9,1220 galaxyEnaQ3B-1-1-7,1220 galaxyEnaQ3B-1-617-2,1220 initiatives Q0_tracks,1188 Q1_tracks,1190 Q2_tracks,1190 Q3_tracks,1190 galaxyEna,1190 galaxyEnaQ0Ba-1,1186 galaxyEnaQ0Ba-1-1,1186 galaxyEnaQ0Ba-1-1-11,1186 galaxyEnaQ0Ba-1-17,1186 galaxyEnaQ0Ba-2,1186 galaxyEnaQ1Ay-4,1186 galaxyEnaQ1Ay-4-2,1186 galaxyEnaQ1Ay-4-2-2,1186 galaxyEnaQ1Ay-43,1186 galaxyEnaQ1Ba-1-17,1186 galaxyEnaQ2Ay-120,1186 galaxyEnaQ2Ay-122,1186 galaxyEnaQ2Ay-4,1186 galaxyEnaQ2Ay-5,1186 galaxyEnaQ2Ay-6,1186 galaxyEnaQ3Ay-4,1186 galaxyEnaQ3Ay-5,1186 galaxyEnaQ3Ay-9,1186 galaxyEnaQ3B-1-1-7,1186 galaxyEnaQ3B-1-617-2,1186 initio augustusGene,4 augustusGene,17 input resist,60 windowmaskerSdust,61 windowmaskerSdust,70 inquiries rosettaMhc,379 ins variantMuts,768 insdc Q0_tracks,49 Q0_tracks,1204 Q1_tracks,51 Q1_tracks,1206 Q2_tracks,51 Q2_tracks,1206 Q3_tracks,51 Q3_tracks,1206 galaxyEna,51 galaxyEna,1206 galaxyEnaQ0Ba-1,47 galaxyEnaQ0Ba-1,1202 galaxyEnaQ0Ba-1-1,47 galaxyEnaQ0Ba-1-1,1202 galaxyEnaQ0Ba-1-1-11,47 galaxyEnaQ0Ba-1-1-11,1202 galaxyEnaQ0Ba-1-17,47 galaxyEnaQ0Ba-1-17,1202 galaxyEnaQ0Ba-2,47 galaxyEnaQ0Ba-2,1202 galaxyEnaQ1Ay-4,47 galaxyEnaQ1Ay-4,1202 galaxyEnaQ1Ay-4-2,47 galaxyEnaQ1Ay-4-2,1202 galaxyEnaQ1Ay-4-2-2,47 galaxyEnaQ1Ay-4-2-2,1202 galaxyEnaQ1Ay-43,47 galaxyEnaQ1Ay-43,1202 galaxyEnaQ1Ba-1-17,47 galaxyEnaQ1Ba-1-17,1202 galaxyEnaQ2Ay-120,47 galaxyEnaQ2Ay-120,1202 galaxyEnaQ2Ay-122,47 galaxyEnaQ2Ay-122,1202 galaxyEnaQ2Ay-4,47 galaxyEnaQ2Ay-4,1202 galaxyEnaQ2Ay-5,47 galaxyEnaQ2Ay-5,1202 galaxyEnaQ2Ay-6,47 galaxyEnaQ2Ay-6,1202 galaxyEnaQ3Ay-4,47 galaxyEnaQ3Ay-4,1202 galaxyEnaQ3Ay-5,47 galaxyEnaQ3Ay-5,1202 galaxyEnaQ3Ay-9,47 galaxyEnaQ3Ay-9,1202 galaxyEnaQ3B-1-1-7,47 galaxyEnaQ3B-1-1-7,1202 galaxyEnaQ3B-1-617-2,47 galaxyEnaQ3B-1-617-2,1202 ucscToINSDC,1 ucscToINSDC,4 ucscToINSDC,32 insect multiz7way,1063 strainCons119way,2441 strainCons44way,2036 insertion sarsCov2Phylo,773 insertions Q0_tracks,535 Q1_tracks,537 Q2_tracks,537 Q3_tracks,537 contacts,266 galaxyEna,537 galaxyEnaQ0Ba-1,533 galaxyEnaQ0Ba-1-1,533 galaxyEnaQ0Ba-1-1-11,533 galaxyEnaQ0Ba-1-17,533 galaxyEnaQ0Ba-2,533 galaxyEnaQ1Ay-4,533 galaxyEnaQ1Ay-4-2,533 galaxyEnaQ1Ay-4-2-2,533 galaxyEnaQ1Ay-43,533 galaxyEnaQ1Ba-1-17,533 galaxyEnaQ2Ay-120,533 galaxyEnaQ2Ay-122,533 galaxyEnaQ2Ay-4,533 galaxyEnaQ2Ay-5,533 galaxyEnaQ2Ay-6,533 galaxyEnaQ3Ay-4,533 galaxyEnaQ3Ay-5,533 galaxyEnaQ3Ay-9,533 galaxyEnaQ3B-1-1-7,533 galaxyEnaQ3B-1-617-2,533 nextstrainSamples,442 potPathoIndel,6 potPathoIndel,148 sarsCov2Phylo,484 sarsCov2PhyloPub,513 variantMuts,759 inserts potPathoIndel,62 potPathoIndel,81 inside unipCov2Chain,369 unipCov2DisulfBond,365 unipCov2Domain,364 unipCov2LocCytopl,364 unipCov2LocExtra,364 unipCov2LocSignal,365 unipCov2LocTransMemb,365 unipCov2Modif,368 unipCov2Mut,365 unipCov2Other,365 unipCov2Repeat,363 unipCov2Struct,367 insights variantMuts,1354 inspect treangen,172 inspected contacts,184 inspection Calu3_07hpi,229 ORFs,227 Vero6_05hpi,229 Vero6_24hpi,229 weizmanOrfs,235 inst primers,135 primers,142 instance Starr_Bloom,96 Starr_Bloom_bind,90 problematicSites,292 instances Q0_tracks,832 Q1_tracks,834 Q2_tracks,834 Q3_tracks,834 galaxyEna,834 galaxyEnaQ0Ba-1,830 galaxyEnaQ0Ba-1-1,830 galaxyEnaQ0Ba-1-1-11,830 galaxyEnaQ0Ba-1-17,830 galaxyEnaQ0Ba-2,830 galaxyEnaQ1Ay-4,830 galaxyEnaQ1Ay-4-2,830 galaxyEnaQ1Ay-4-2-2,830 galaxyEnaQ1Ay-43,830 galaxyEnaQ1Ba-1-17,830 galaxyEnaQ2Ay-120,830 galaxyEnaQ2Ay-122,830 galaxyEnaQ2Ay-4,830 galaxyEnaQ2Ay-5,830 galaxyEnaQ2Ay-6,830 galaxyEnaQ3Ay-4,830 galaxyEnaQ3Ay-5,830 galaxyEnaQ3Ay-9,830 galaxyEnaQ3B-1-1-7,830 galaxyEnaQ3B-1-617-2,830 instead sarsCov2PhyloPub,380 institute crisprDet,40 crisprDet,92 iedb,27 microdel,230 resist,58 resist,154 resistPred,246 spikeMuts,361 spikeMuts,397 strainCons44way,2271 weizmanOrfs,13 institutes ncbiGeneBGP,191 ncbiProducts,207 institution crisprDet,53 primers,127 institutions sarsCov2PhyloPub,1029 instructions IgG_Z-score-_COVID-19_patients,338 IgM_Z-score-_COVID-19_patients,338 artic,121 articV4,121 articV4_1,134 bpmIggCovidSum,347 bpmIgmCovidSum,347 cas13Crispr,406 contacts,334 kimRnaMod,168 kimTranscripts,385 ncbiGeneBGP,104 ncbiProducts,120 nextstrainSamples,840 pbm,347 pbmShanghai,464 phyloGenes,382 poranHla1,195 poranHla2,195 primers,199 primers,230 rapid,275 swift,204 transcriptome,391 unipCov2AliSwissprot,336 unipCov2Chain,566 unipCov2DisulfBond,562 unipCov2Domain,561 unipCov2Interest,242 unipCov2LocCytopl,561 unipCov2LocExtra,561 unipCov2LocSignal,562 unipCov2LocTransMemb,562 unipCov2Modif,565 unipCov2Mut,562 unipCov2Other,562 unipCov2Repeat,560 unipCov2Struct,564 vaccines,426 varskip,127 insufficient icshape,68 multiz7way,387 strainCons119way,729 strainCons44way,677 integrated pdb,88 integrator Calu3_07hpi,326 IgG_Z-score-_COVID-19_patients,302 IgM_Z-score-_COVID-19_patients,302 ORFs,324 PhyloCSF_smooth,644 Starr_Bloom,218 Starr_Bloom_bind,212 Vero6_05hpi,326 Vero6_24hpi,326 abEscape,670 artic,85 articV4,85 articV4_1,98 bloomEscMabAvg,674 bloomEscMax,680 bloomEscSerumAvg,675 bloomEscTop,678 bpmIggCovidSum,311 bpmIgmCovidSum,311 cas13Crispr,370 contacts,298 cpgIslandExt,526 cpgIslandExtUnmasked,529 cpgIslandSuper,526 escape,677 icshape,110 kimRnaMod,132 kimTranscripts,349 mccoy,670 microdel,157 ncbiGeneBGP,55 ncbiProducts,71 nextstrainClade,206 nextstrainFreq,199 nextstrainGene,156 nextstrainParsimony,368 pbm,311 pbmShanghai,428 phyloGenes,346 poranHla1,159 poranHla2,159 primers,343 problematicSites,526 rapid,239 rappuoli,677 recomb,300 resist,99 resistPred,191 sarsCov2Phylo,731 sarsCov2PhyloPub,881 spikeMuts,308 swift,168 transcriptome,355 unipCov2AliSwissprot,276 unipCov2Chain,506 unipCov2DisulfBond,502 unipCov2Domain,501 unipCov2Interest,182 unipCov2LocCytopl,501 unipCov2LocExtra,501 unipCov2LocSignal,502 unipCov2LocTransMemb,502 unipCov2Modif,505 unipCov2Mut,502 unipCov2Other,502 unipCov2Repeat,500 unipCov2Struct,504 variantMuts,1002 varskip,91 weizmanOrfs,332 intend nextstrainFreq,315 nextstrainSamples,961 sarsCov2Phylo,911 sarsCov2PhyloPub,1017 intended nextstrainFreq,276 nextstrainSamples,928 sarsCov2Phylo,878 sarsCov2PhyloPub,984 intensities IgG_Z-score-_COVID-19_patients,18 IgM_Z-score-_COVID-19_patients,18 bpmIggCovidSum,27 bpmIgmCovidSum,27 pbm,27 pbmShanghai,30 intensity IgG_Z-score-_COVID-19_patients,147 IgG_Z-score-_COVID-19_patients,164 IgM_Z-score-_COVID-19_patients,147 IgM_Z-score-_COVID-19_patients,164 bpmIggCovidSum,156 bpmIggCovidSum,173 bpmIgmCovidSum,156 bpmIgmCovidSum,173 pbm,156 pbm,173 pbmShanghai,260 inter-atom contacts,151 interact gordon2,2 gordon2,66 interacting gordon2,4 interaction gordon2,28 gordon2,126 gordon2,260 interactions IgG_Z-score-_COVID-19_patients,434 IgM_Z-score-_COVID-19_patients,434 bpmIggCovidSum,443 bpmIgmCovidSum,443 gordon2,73 gordon2,138 gordon2,147 gordon2,252 pbm,443 interactive Starr_Bloom,147 Starr_Bloom_bind,141 nextstrainSamples,627 interactively Calu3_07hpi,313 IgG_Z-score-_COVID-19_patients,289 IgM_Z-score-_COVID-19_patients,289 ORFs,311 PhyloCSF_smooth,632 Starr_Bloom,205 Starr_Bloom_bind,199 Vero6_05hpi,313 Vero6_24hpi,313 abEscape,657 artic,72 articV4,72 articV4_1,83 bloomEscMabAvg,661 bloomEscMax,667 bloomEscSerumAvg,662 bloomEscTop,665 bpmIggCovidSum,298 bpmIgmCovidSum,298 cas13Crispr,357 contacts,285 cpgIslandExt,515 cpgIslandExtUnmasked,518 cpgIslandSuper,515 escape,664 icshape,102 kimRnaMod,119 kimTranscripts,336 mccoy,657 microdel,145 ncbiGeneBGP,47 ncbiProducts,63 nextstrainClade,198 nextstrainFreq,191 nextstrainGene,148 nextstrainParsimony,360 pbm,298 pbmShanghai,415 phyloGenes,333 poranHla1,146 poranHla2,146 primers,335 problematicSites,518 rapid,226 rappuoli,664 recomb,292 resist,91 resistPred,179 sarsCov2Phylo,723 sarsCov2PhyloPub,873 spikeMuts,301 swift,155 transcriptome,342 unipCov2AliSwissprot,268 unipCov2Chain,498 unipCov2DisulfBond,494 unipCov2Domain,493 unipCov2Interest,174 unipCov2LocCytopl,493 unipCov2LocExtra,493 unipCov2LocSignal,494 unipCov2LocTransMemb,494 unipCov2Modif,497 unipCov2Mut,494 unipCov2Other,494 unipCov2Repeat,492 unipCov2Struct,496 variantMuts,994 varskip,78 weizmanOrfs,319 interactor gordon2,105 interest nextstrainClade,140 nextstrainParsimony,234 pond,81 spikeMuts,393 unipCov2Interest,6 unipCov2Interest,21 variantMuts,10 variantMuts,116 variantMuts,174 variantMuts,1060 interested treangen,167 interface nextstrainClade,33 nextstrainFreq,33 nextstrainGene,31 nextstrainParsimony,50 nextstrainSamples,46 intergenic genscan,47 interior pond,102 pond,149 internal primers,83 transcriptome,319 international primers,58 ucscToINSDC,5 ucscToINSDC,27 interspecific_contamination problematicSites,288 interval targets,132 intervals windowmaskerSdust,4 into IgG_Z-score-_COVID-19_patients,123 IgM_Z-score-_COVID-19_patients,123 PhyloCSF_smooth,578 PhyloCSFpower,593 Starr_Bloom,180 Starr_Bloom_bind,174 abEscape,580 abEscape,595 abEscape,611 bloomEscMabAvg,584 bloomEscMabAvg,599 bloomEscMabAvg,615 bloomEscMax,590 bloomEscMax,605 bloomEscMax,621 bloomEscSerumAvg,585 bloomEscSerumAvg,600 bloomEscSerumAvg,616 bloomEscTop,588 bloomEscTop,603 bloomEscTop,619 bpmIggCovidSum,132 bpmIgmCovidSum,132 contacts,209 cpgIslandExt,105 cpgIslandExtUnmasked,108 cpgIslandSuper,105 escape,587 escape,602 escape,618 mccoy,580 mccoy,595 mccoy,611 multiz7way,642 nextstrainGene,67 nextstrainSamples,89 pbm,132 pbmShanghai,189 pdb,89 problematicSites,120 problematicSites,462 rappuoli,587 rappuoli,602 rappuoli,618 recomb,195 sarsCov2Phylo,527 sarsCov2PhyloPub,552 strainCons119way,991 strainCons44way,939 windowmaskerSdust,80 intra-sample Q0_tracks,582 Q1_tracks,584 Q2_tracks,584 Q3_tracks,584 galaxyEna,584 galaxyEnaQ0Ba-1,580 galaxyEnaQ0Ba-1-1,580 galaxyEnaQ0Ba-1-1-11,580 galaxyEnaQ0Ba-1-17,580 galaxyEnaQ0Ba-2,580 galaxyEnaQ1Ay-4,580 galaxyEnaQ1Ay-4-2,580 galaxyEnaQ1Ay-4-2-2,580 galaxyEnaQ1Ay-43,580 galaxyEnaQ1Ba-1-17,580 galaxyEnaQ2Ay-120,580 galaxyEnaQ2Ay-122,580 galaxyEnaQ2Ay-4,580 galaxyEnaQ2Ay-5,580 galaxyEnaQ2Ay-6,580 galaxyEnaQ3Ay-4,580 galaxyEnaQ3Ay-5,580 galaxyEnaQ3Ay-9,580 galaxyEnaQ3B-1-1-7,580 galaxyEnaQ3B-1-617-2,580 intrahost treangen,1 treangen,3 treangen,20 treangen,88 intron augustusGene,88 augustusGene,330 contacts,67 publicAnnots,94 introns genscan,45 kimTranscripts,103 transcriptome,95 invisible nextstrainSamples,403 sarsCov2Phylo,407 sarsCov2PhyloPub,436 invivo.bigwig icshape,161 involve kimTranscripts,160 kimTranscripts,205 kimTranscripts,325 iota nextstrainFreq21F_Iota,2 nextstrainFreq21F_Iota,5 nextstrainSamples21F_Iota,2 nextstrainSamples21F_Iota,8 variantAaMutsV2_B_1_526,1 variantAaMutsV2_B_1_526,4 variantMuts,689 variantMuts,1078 variantNucMutsV2_B_1_526,1 variantNucMutsV2_B_1_526,4 ipbcams-wh-01 strainCons119way,1166 ipbcams-wh-02 strainCons119way,1095 ipbcams-wh-03 strainCons119way,1087 ipbcams-wh-04 strainCons119way,1055 ipbcams-wh-05 strainCons119way,1073 iq-tree nextstrainSamples,1062 iqtc01 strainCons119way,1150 iqtc02 strainCons119way,1239 iqtc03 strainCons119way,1244 iqtc04 strainCons119way,1183 irwin PhyloCSF_smooth,682 PhyloCSFpower,644 phyloGenes,473 is Calu3_07hpi,32 IgG_Z-score-_COVID-19_patients,105 IgG_Z-score-_COVID-19_patients,134 IgG_Z-score-_COVID-19_patients,148 IgG_Z-score-_COVID-19_patients,157 IgG_Z-score-_COVID-19_patients,310 IgM_Z-score-_COVID-19_patients,105 IgM_Z-score-_COVID-19_patients,134 IgM_Z-score-_COVID-19_patients,148 IgM_Z-score-_COVID-19_patients,157 IgM_Z-score-_COVID-19_patients,310 ORFs,30 PhyloCSF_smooth,96 PhyloCSF_smooth,165 PhyloCSF_smooth,172 PhyloCSF_smooth,220 PhyloCSF_smooth,456 PhyloCSF_smooth,555 PhyloCSFpower,111 PhyloCSFpower,180 PhyloCSFpower,187 PhyloCSFpower,235 PhyloCSFpower,471 PhyloCSFpower,570 Q0_tracks,109 Q0_tracks,129 Q0_tracks,181 Q0_tracks,358 Q0_tracks,780 Q0_tracks,798 Q0_tracks,1035 Q0_tracks,1111 Q1_tracks,111 Q1_tracks,131 Q1_tracks,183 Q1_tracks,360 Q1_tracks,782 Q1_tracks,800 Q1_tracks,1037 Q1_tracks,1113 Q2_tracks,111 Q2_tracks,131 Q2_tracks,183 Q2_tracks,360 Q2_tracks,782 Q2_tracks,800 Q2_tracks,1037 Q2_tracks,1113 Q3_tracks,111 Q3_tracks,131 Q3_tracks,183 Q3_tracks,360 Q3_tracks,782 Q3_tracks,800 Q3_tracks,1037 Q3_tracks,1113 Starr_Bloom,91 Starr_Bloom,114 Starr_Bloom,123 Starr_Bloom,128 Starr_Bloom,139 Starr_Bloom_bind,85 Starr_Bloom_bind,108 Starr_Bloom_bind,117 Starr_Bloom_bind,122 Starr_Bloom_bind,133 Vero6_05hpi,32 Vero6_24hpi,32 abEscape,448 addgene,126 addgene,262 artic,93 articV4,93 articV4_1,106 bloomEscMabAvg,452 bloomEscMax,458 bloomEscSerumAvg,453 bloomEscTop,456 bpmIggCovidSum,114 bpmIggCovidSum,143 bpmIggCovidSum,157 bpmIggCovidSum,166 bpmIggCovidSum,319 bpmIgmCovidSum,114 bpmIgmCovidSum,143 bpmIgmCovidSum,157 bpmIgmCovidSum,166 bpmIgmCovidSum,319 cas13Crispr,114 cas13Crispr,126 cas13Crispr,147 cas13Crispr,166 cas13Crispr,378 cd8escape,180 contacts,172 contacts,306 cpgIslandExt,56 cpgIslandExt,113 cpgIslandExt,121 cpgIslandExt,130 cpgIslandExt,160 cpgIslandExt,203 cpgIslandExt,321 cpgIslandExt,330 cpgIslandExt,335 cpgIslandExt,347 cpgIslandExt,368 cpgIslandExt,404 cpgIslandExt,494 cpgIslandExtUnmasked,59 cpgIslandExtUnmasked,116 cpgIslandExtUnmasked,124 cpgIslandExtUnmasked,133 cpgIslandExtUnmasked,163 cpgIslandExtUnmasked,206 cpgIslandExtUnmasked,324 cpgIslandExtUnmasked,333 cpgIslandExtUnmasked,338 cpgIslandExtUnmasked,350 cpgIslandExtUnmasked,371 cpgIslandExtUnmasked,407 cpgIslandExtUnmasked,497 cpgIslandSuper,56 cpgIslandSuper,113 cpgIslandSuper,121 cpgIslandSuper,130 cpgIslandSuper,160 cpgIslandSuper,203 cpgIslandSuper,321 cpgIslandSuper,330 cpgIslandSuper,335 cpgIslandSuper,347 cpgIslandSuper,368 cpgIslandSuper,404 cpgIslandSuper,494 crisprDet,101 crisprDet,128 epitopes,47 epitopes,59 epitopes,210 epitopes,241 escape,455 galaxyEna,111 galaxyEna,131 galaxyEna,183 galaxyEna,360 galaxyEna,782 galaxyEna,800 galaxyEna,1037 galaxyEna,1113 galaxyEnaQ0Ba-1,107 galaxyEnaQ0Ba-1,127 galaxyEnaQ0Ba-1,179 galaxyEnaQ0Ba-1,356 galaxyEnaQ0Ba-1,778 galaxyEnaQ0Ba-1,796 galaxyEnaQ0Ba-1,1033 galaxyEnaQ0Ba-1,1109 galaxyEnaQ0Ba-1-1,107 galaxyEnaQ0Ba-1-1,127 galaxyEnaQ0Ba-1-1,179 galaxyEnaQ0Ba-1-1,356 galaxyEnaQ0Ba-1-1,778 galaxyEnaQ0Ba-1-1,796 galaxyEnaQ0Ba-1-1,1033 galaxyEnaQ0Ba-1-1,1109 galaxyEnaQ0Ba-1-1-11,107 galaxyEnaQ0Ba-1-1-11,127 galaxyEnaQ0Ba-1-1-11,179 galaxyEnaQ0Ba-1-1-11,356 galaxyEnaQ0Ba-1-1-11,778 galaxyEnaQ0Ba-1-1-11,796 galaxyEnaQ0Ba-1-1-11,1033 galaxyEnaQ0Ba-1-1-11,1109 galaxyEnaQ0Ba-1-17,107 galaxyEnaQ0Ba-1-17,127 galaxyEnaQ0Ba-1-17,179 galaxyEnaQ0Ba-1-17,356 galaxyEnaQ0Ba-1-17,778 galaxyEnaQ0Ba-1-17,796 galaxyEnaQ0Ba-1-17,1033 galaxyEnaQ0Ba-1-17,1109 galaxyEnaQ0Ba-2,107 galaxyEnaQ0Ba-2,127 galaxyEnaQ0Ba-2,179 galaxyEnaQ0Ba-2,356 galaxyEnaQ0Ba-2,778 galaxyEnaQ0Ba-2,796 galaxyEnaQ0Ba-2,1033 galaxyEnaQ0Ba-2,1109 galaxyEnaQ1Ay-4,107 galaxyEnaQ1Ay-4,127 galaxyEnaQ1Ay-4,179 galaxyEnaQ1Ay-4,356 galaxyEnaQ1Ay-4,778 galaxyEnaQ1Ay-4,796 galaxyEnaQ1Ay-4,1033 galaxyEnaQ1Ay-4,1109 galaxyEnaQ1Ay-4-2,107 galaxyEnaQ1Ay-4-2,127 galaxyEnaQ1Ay-4-2,179 galaxyEnaQ1Ay-4-2,356 galaxyEnaQ1Ay-4-2,778 galaxyEnaQ1Ay-4-2,796 galaxyEnaQ1Ay-4-2,1033 galaxyEnaQ1Ay-4-2,1109 galaxyEnaQ1Ay-4-2-2,107 galaxyEnaQ1Ay-4-2-2,127 galaxyEnaQ1Ay-4-2-2,179 galaxyEnaQ1Ay-4-2-2,356 galaxyEnaQ1Ay-4-2-2,778 galaxyEnaQ1Ay-4-2-2,796 galaxyEnaQ1Ay-4-2-2,1033 galaxyEnaQ1Ay-4-2-2,1109 galaxyEnaQ1Ay-43,107 galaxyEnaQ1Ay-43,127 galaxyEnaQ1Ay-43,179 galaxyEnaQ1Ay-43,356 galaxyEnaQ1Ay-43,778 galaxyEnaQ1Ay-43,796 galaxyEnaQ1Ay-43,1033 galaxyEnaQ1Ay-43,1109 galaxyEnaQ1Ba-1-17,107 galaxyEnaQ1Ba-1-17,127 galaxyEnaQ1Ba-1-17,179 galaxyEnaQ1Ba-1-17,356 galaxyEnaQ1Ba-1-17,778 galaxyEnaQ1Ba-1-17,796 galaxyEnaQ1Ba-1-17,1033 galaxyEnaQ1Ba-1-17,1109 galaxyEnaQ2Ay-120,107 galaxyEnaQ2Ay-120,127 galaxyEnaQ2Ay-120,179 galaxyEnaQ2Ay-120,356 galaxyEnaQ2Ay-120,778 galaxyEnaQ2Ay-120,796 galaxyEnaQ2Ay-120,1033 galaxyEnaQ2Ay-120,1109 galaxyEnaQ2Ay-122,107 galaxyEnaQ2Ay-122,127 galaxyEnaQ2Ay-122,179 galaxyEnaQ2Ay-122,356 galaxyEnaQ2Ay-122,778 galaxyEnaQ2Ay-122,796 galaxyEnaQ2Ay-122,1033 galaxyEnaQ2Ay-122,1109 galaxyEnaQ2Ay-4,107 galaxyEnaQ2Ay-4,127 galaxyEnaQ2Ay-4,179 galaxyEnaQ2Ay-4,356 galaxyEnaQ2Ay-4,778 galaxyEnaQ2Ay-4,796 galaxyEnaQ2Ay-4,1033 galaxyEnaQ2Ay-4,1109 galaxyEnaQ2Ay-5,107 galaxyEnaQ2Ay-5,127 galaxyEnaQ2Ay-5,179 galaxyEnaQ2Ay-5,356 galaxyEnaQ2Ay-5,778 galaxyEnaQ2Ay-5,796 galaxyEnaQ2Ay-5,1033 galaxyEnaQ2Ay-5,1109 galaxyEnaQ2Ay-6,107 galaxyEnaQ2Ay-6,127 galaxyEnaQ2Ay-6,179 galaxyEnaQ2Ay-6,356 galaxyEnaQ2Ay-6,778 galaxyEnaQ2Ay-6,796 galaxyEnaQ2Ay-6,1033 galaxyEnaQ2Ay-6,1109 galaxyEnaQ3Ay-4,107 galaxyEnaQ3Ay-4,127 galaxyEnaQ3Ay-4,179 galaxyEnaQ3Ay-4,356 galaxyEnaQ3Ay-4,778 galaxyEnaQ3Ay-4,796 galaxyEnaQ3Ay-4,1033 galaxyEnaQ3Ay-4,1109 galaxyEnaQ3Ay-5,107 galaxyEnaQ3Ay-5,127 galaxyEnaQ3Ay-5,179 galaxyEnaQ3Ay-5,356 galaxyEnaQ3Ay-5,778 galaxyEnaQ3Ay-5,796 galaxyEnaQ3Ay-5,1033 galaxyEnaQ3Ay-5,1109 galaxyEnaQ3Ay-9,107 galaxyEnaQ3Ay-9,127 galaxyEnaQ3Ay-9,179 galaxyEnaQ3Ay-9,356 galaxyEnaQ3Ay-9,778 galaxyEnaQ3Ay-9,796 galaxyEnaQ3Ay-9,1033 galaxyEnaQ3Ay-9,1109 galaxyEnaQ3B-1-1-7,107 galaxyEnaQ3B-1-1-7,127 galaxyEnaQ3B-1-1-7,179 galaxyEnaQ3B-1-1-7,356 galaxyEnaQ3B-1-1-7,778 galaxyEnaQ3B-1-1-7,796 galaxyEnaQ3B-1-1-7,1033 galaxyEnaQ3B-1-1-7,1109 galaxyEnaQ3B-1-617-2,107 galaxyEnaQ3B-1-617-2,127 galaxyEnaQ3B-1-617-2,179 galaxyEnaQ3B-1-617-2,356 galaxyEnaQ3B-1-617-2,778 galaxyEnaQ3B-1-617-2,796 galaxyEnaQ3B-1-617-2,1033 galaxyEnaQ3B-1-617-2,1109 gap,46 gap,91 gap,98 gap,106 gc5BaseBw,32 gold,45 gold,119 gold,125 gordon2,120 icshape,74 iedb,75 kimIvtCov,43 kimIvtCov,95 kimRnaMod,106 kimRnaMod,140 kimTranscripts,173 kimTranscripts,222 kimTranscripts,357 mccoy,448 multiz7way,136 multiz7way,163 multiz7way,194 multiz7way,216 multiz7way,225 multiz7way,370 multiz7way,381 multiz7way,386 multiz7way,392 multiz7way,400 multiz7way,458 multiz7way,514 multiz7way,523 multiz7way,541 multiz7way,765 ncbiGeneBGP,26 ncbiGeneBGP,62 ncbiProducts,29 ncbiProducts,78 nextstrainFreq,275 nextstrainFreq,286 nextstrainParsimony,135 nextstrainParsimony,213 nextstrainParsimony,407 nextstrainSamples,213 nextstrainSamples,230 nextstrainSamples,238 nextstrainSamples,291 nextstrainSamples,311 nextstrainSamples,318 nextstrainSamples,352 nextstrainSamples,390 nextstrainSamples,466 nextstrainSamples,494 nextstrainSamples,537 nextstrainSamples,635 nextstrainSamples,776 nextstrainSamples,884 nextstrainSamples,927 nextstrainSamples,938 nextstrainSamples,973 pbm,114 pbm,143 pbm,157 pbm,166 pbm,319 pbmShanghai,171 pbmShanghai,211 pbmShanghai,220 pbmShanghai,264 pbmShanghai,300 pbmShanghai,436 pdb,94 phyloGenes,98 phyloGenes,124 phyloGenes,195 phyloGenes,220 phyloGenes,243 phyloGenes,252 phyloGenes,273 phyloGenes,295 phyloGenes,301 phyloGenes,354 pond,42 pond,47 pond,64 pond,113 pond,163 poranHla1,167 poranHla2,167 primers,105 primers,223 problematicSites,51 problematicSites,74 problematicSites,142 problematicSites,165 problematicSites,259 problematicSites,303 problematicSites,324 problematicSitesCaution,6 problematicSitesMask,6 pyle,89 pyle,113 pyle,180 rapid,174 rapid,247 rappuoli,455 recomb,42 recomb,112 recomb,118 recomb,155 recomb,160 resist,106 resistPred,59 resistPred,125 resistPred,198 rfam,157 rnaStructRangan,53 rosettaMhc,31 rosettaMhc,306 sarsCov2Phylo,74 sarsCov2Phylo,106 sarsCov2Phylo,316 sarsCov2Phylo,323 sarsCov2Phylo,356 sarsCov2Phylo,394 sarsCov2Phylo,415 sarsCov2Phylo,496 sarsCov2Phylo,647 sarsCov2Phylo,668 sarsCov2Phylo,694 sarsCov2Phylo,820 sarsCov2Phylo,877 sarsCov2Phylo,888 sarsCov2Phylo,923 sarsCov2PhyloPub,88 sarsCov2PhyloPub,119 sarsCov2PhyloPub,138 sarsCov2PhyloPub,149 sarsCov2PhyloPub,323 sarsCov2PhyloPub,330 sarsCov2PhyloPub,385 sarsCov2PhyloPub,423 sarsCov2PhyloPub,444 sarsCov2PhyloPub,525 sarsCov2PhyloPub,671 sarsCov2PhyloPub,692 sarsCov2PhyloPub,903 sarsCov2PhyloPub,959 sarsCov2PhyloPub,983 sarsCov2PhyloPub,994 simpleRepeat,28 spikeMuts,26 spikeMuts,383 strainCons119way,172 strainCons119way,253 strainCons119way,261 strainCons119way,274 strainCons119way,303 strainCons119way,406 strainCons119way,424 strainCons119way,485 strainCons119way,512 strainCons119way,543 strainCons119way,565 strainCons119way,574 strainCons119way,712 strainCons119way,723 strainCons119way,728 strainCons119way,734 strainCons119way,742 strainCons119way,754 strainCons119way,764 strainCons119way,808 strainCons119way,864 strainCons119way,873 strainCons119way,891 strainCons119way,1525 strainCons119way,1860 strainCons119way,2102 strainCons119way,2185 strainCons44way,120 strainCons44way,201 strainCons44way,209 strainCons44way,222 strainCons44way,251 strainCons44way,354 strainCons44way,372 strainCons44way,433 strainCons44way,460 strainCons44way,491 strainCons44way,513 strainCons44way,522 strainCons44way,660 strainCons44way,671 strainCons44way,676 strainCons44way,682 strainCons44way,690 strainCons44way,702 strainCons44way,712 strainCons44way,756 strainCons44way,812 strainCons44way,821 strainCons44way,839 strainCons44way,1195 strainCons44way,1455 strainCons44way,1697 strainCons44way,1780 strainCons44way,2259 swift,111 swift,176 targets,149 transcriptome,156 transcriptome,201 transcriptome,363 treangen,34 treangen,51 treangen,59 unipCov2AliSwissprot,283 unipCov2Chain,107 unipCov2Chain,513 unipCov2DisulfBond,103 unipCov2DisulfBond,509 unipCov2Domain,102 unipCov2Domain,508 unipCov2Interest,189 unipCov2LocCytopl,102 unipCov2LocCytopl,508 unipCov2LocExtra,102 unipCov2LocExtra,508 unipCov2LocSignal,103 unipCov2LocSignal,509 unipCov2LocTransMemb,103 unipCov2LocTransMemb,509 unipCov2Modif,106 unipCov2Modif,512 unipCov2Mut,103 unipCov2Mut,509 unipCov2Other,103 unipCov2Other,509 unipCov2Repeat,101 unipCov2Repeat,507 unipCov2Struct,105 unipCov2Struct,511 variantMuts,59 variantMuts,82 variantMuts,1166 varskip,45 varskip,99 weizmanOrfs,38 windowmaskerSdust,25 windowmaskerSdust,39 island cpgIslandExt,343 cpgIslandExtUnmasked,346 cpgIslandSuper,343 islands cpgIslandExt,2 cpgIslandExt,4 cpgIslandExt,5 cpgIslandExt,16 cpgIslandExt,27 cpgIslandExt,148 cpgIslandExt,177 cpgIslandExt,226 cpgIslandExt,320 cpgIslandExt,507 cpgIslandExt,609 cpgIslandExtUnmasked,4 cpgIslandExtUnmasked,8 cpgIslandExtUnmasked,19 cpgIslandExtUnmasked,30 cpgIslandExtUnmasked,151 cpgIslandExtUnmasked,180 cpgIslandExtUnmasked,229 cpgIslandExtUnmasked,323 cpgIslandExtUnmasked,510 cpgIslandExtUnmasked,612 cpgIslandSuper,2 cpgIslandSuper,4 cpgIslandSuper,5 cpgIslandSuper,16 cpgIslandSuper,27 cpgIslandSuper,148 cpgIslandSuper,177 cpgIslandSuper,226 cpgIslandSuper,320 cpgIslandSuper,507 cpgIslandSuper,609 ismb PhyloCSFpower,694 phyloGenes,515 isnps treangen,19 treangen,87 treangen,112 treangen,206 isolate SHAPE,8 pyle,233 sarsCov2PhyloPub,936 swift,76 isolates Calu3_07hpi,262 ORFs,260 Vero6_05hpi,262 Vero6_24hpi,262 weizmanOrfs,268 israeli Calu3_07hpi,364 ORFs,362 Vero6_05hpi,364 Vero6_24hpi,364 weizmanOrfs,370 issue iedb,127 problematicSites,302 problematicSites,323 unipCov2AliSwissprot,460 unipCov2Chain,689 unipCov2DisulfBond,685 unipCov2Domain,684 unipCov2Interest,343 unipCov2LocCytopl,684 unipCov2LocExtra,684 unipCov2LocSignal,685 unipCov2LocTransMemb,685 unipCov2Modif,688 unipCov2Mut,685 unipCov2Other,685 unipCov2Repeat,683 unipCov2Struct,687 vaccines,611 issues problematicSites,551 it Calu3_07hpi,31 ORFs,29 PhyloCSF_smooth,77 PhyloCSF_smooth,219 PhyloCSF_smooth,479 PhyloCSFpower,92 PhyloCSFpower,234 PhyloCSFpower,494 Q0_tracks,56 Q0_tracks,602 Q0_tracks,1202 Q1_tracks,58 Q1_tracks,604 Q1_tracks,1204 Q2_tracks,58 Q2_tracks,604 Q2_tracks,1204 Q3_tracks,58 Q3_tracks,604 Q3_tracks,1204 Vero6_05hpi,31 Vero6_24hpi,31 galaxyEna,58 galaxyEna,604 galaxyEna,1204 galaxyEnaQ0Ba-1,54 galaxyEnaQ0Ba-1,600 galaxyEnaQ0Ba-1,1200 galaxyEnaQ0Ba-1-1,54 galaxyEnaQ0Ba-1-1,600 galaxyEnaQ0Ba-1-1,1200 galaxyEnaQ0Ba-1-1-11,54 galaxyEnaQ0Ba-1-1-11,600 galaxyEnaQ0Ba-1-1-11,1200 galaxyEnaQ0Ba-1-17,54 galaxyEnaQ0Ba-1-17,600 galaxyEnaQ0Ba-1-17,1200 galaxyEnaQ0Ba-2,54 galaxyEnaQ0Ba-2,600 galaxyEnaQ0Ba-2,1200 galaxyEnaQ1Ay-4,54 galaxyEnaQ1Ay-4,600 galaxyEnaQ1Ay-4,1200 galaxyEnaQ1Ay-4-2,54 galaxyEnaQ1Ay-4-2,600 galaxyEnaQ1Ay-4-2,1200 galaxyEnaQ1Ay-4-2-2,54 galaxyEnaQ1Ay-4-2-2,600 galaxyEnaQ1Ay-4-2-2,1200 galaxyEnaQ1Ay-43,54 galaxyEnaQ1Ay-43,600 galaxyEnaQ1Ay-43,1200 galaxyEnaQ1Ba-1-17,54 galaxyEnaQ1Ba-1-17,600 galaxyEnaQ1Ba-1-17,1200 galaxyEnaQ2Ay-120,54 galaxyEnaQ2Ay-120,600 galaxyEnaQ2Ay-120,1200 galaxyEnaQ2Ay-122,54 galaxyEnaQ2Ay-122,600 galaxyEnaQ2Ay-122,1200 galaxyEnaQ2Ay-4,54 galaxyEnaQ2Ay-4,600 galaxyEnaQ2Ay-4,1200 galaxyEnaQ2Ay-5,54 galaxyEnaQ2Ay-5,600 galaxyEnaQ2Ay-5,1200 galaxyEnaQ2Ay-6,54 galaxyEnaQ2Ay-6,600 galaxyEnaQ2Ay-6,1200 galaxyEnaQ3Ay-4,54 galaxyEnaQ3Ay-4,600 galaxyEnaQ3Ay-4,1200 galaxyEnaQ3Ay-5,54 galaxyEnaQ3Ay-5,600 galaxyEnaQ3Ay-5,1200 galaxyEnaQ3Ay-9,54 galaxyEnaQ3Ay-9,600 galaxyEnaQ3Ay-9,1200 galaxyEnaQ3B-1-1-7,54 galaxyEnaQ3B-1-1-7,600 galaxyEnaQ3B-1-1-7,1200 galaxyEnaQ3B-1-617-2,54 galaxyEnaQ3B-1-617-2,600 galaxyEnaQ3B-1-617-2,1200 gap,97 genscan,143 ncbiProducts,42 nextstrainClade,42 nextstrainFreq,42 nextstrainGene,38 nextstrainParsimony,59 nextstrainSamples,53 nextstrainSamples,237 nextstrainSamples,790 pbmShanghai,120 pdb,90 phyloGenes,112 phyloGenes,138 phyloGenes,211 phyloGenes,234 phyloGenes,264 phyloGenes,315 pond,162 problematicSites,50 problematicSites,141 problematicSites,258 recomb,50 rosettaMhc,30 sarsCov2Phylo,420 sarsCov2Phylo,430 sarsCov2Phylo,444 sarsCov2Phylo,612 sarsCov2PhyloPub,449 sarsCov2PhyloPub,459 sarsCov2PhyloPub,473 sarsCov2PhyloPub,639 strainCons119way,110 strainCons119way,195 strainCons119way,2005 strainCons44way,58 strainCons44way,143 strainCons44way,1600 treangen,230 unipCov2AliSwissprot,30 unipCov2Chain,113 unipCov2DisulfBond,109 unipCov2Domain,108 unipCov2LocCytopl,108 unipCov2LocExtra,108 unipCov2LocSignal,109 unipCov2LocTransMemb,109 unipCov2Modif,112 unipCov2Mut,109 unipCov2Other,109 unipCov2Repeat,107 unipCov2Struct,111 weizmanOrfs,37 italy strainCons119way,1470 item poranHla1,97 poranHla1,110 poranHla2,97 poranHla2,110 unipCov2Interest,64 items spikeMuts,182 its PhyloCSF_smooth,457 PhyloCSFpower,472 Q0_tracks,573 Q0_tracks,1160 Q1_tracks,575 Q1_tracks,1162 Q2_tracks,575 Q2_tracks,1162 Q3_tracks,575 Q3_tracks,1162 cpgIslandExt,509 cpgIslandExtUnmasked,512 cpgIslandSuper,509 galaxyEna,575 galaxyEna,1162 galaxyEnaQ0Ba-1,571 galaxyEnaQ0Ba-1,1158 galaxyEnaQ0Ba-1-1,571 galaxyEnaQ0Ba-1-1,1158 galaxyEnaQ0Ba-1-1-11,571 galaxyEnaQ0Ba-1-1-11,1158 galaxyEnaQ0Ba-1-17,571 galaxyEnaQ0Ba-1-17,1158 galaxyEnaQ0Ba-2,571 galaxyEnaQ0Ba-2,1158 galaxyEnaQ1Ay-4,571 galaxyEnaQ1Ay-4,1158 galaxyEnaQ1Ay-4-2,571 galaxyEnaQ1Ay-4-2,1158 galaxyEnaQ1Ay-4-2-2,571 galaxyEnaQ1Ay-4-2-2,1158 galaxyEnaQ1Ay-43,571 galaxyEnaQ1Ay-43,1158 galaxyEnaQ1Ba-1-17,571 galaxyEnaQ1Ba-1-17,1158 galaxyEnaQ2Ay-120,571 galaxyEnaQ2Ay-120,1158 galaxyEnaQ2Ay-122,571 galaxyEnaQ2Ay-122,1158 galaxyEnaQ2Ay-4,571 galaxyEnaQ2Ay-4,1158 galaxyEnaQ2Ay-5,571 galaxyEnaQ2Ay-5,1158 galaxyEnaQ2Ay-6,571 galaxyEnaQ2Ay-6,1158 galaxyEnaQ3Ay-4,571 galaxyEnaQ3Ay-4,1158 galaxyEnaQ3Ay-5,571 galaxyEnaQ3Ay-5,1158 galaxyEnaQ3Ay-9,571 galaxyEnaQ3Ay-9,1158 galaxyEnaQ3B-1-1-7,571 galaxyEnaQ3B-1-1-7,1158 galaxyEnaQ3B-1-617-2,571 galaxyEnaQ3B-1-617-2,1158 kimNp,83 nextstrainClade,224 nextstrainFreq,357 nextstrainGene,173 nextstrainParsimony,436 nextstrainSamples,395 nextstrainSamples,913 pdb,44 sarsCov2Phylo,399 sarsCov2PhyloPub,374 sarsCov2PhyloPub,428 strainCons119way,205 strainCons119way,409 strainCons119way,2109 strainCons119way,2117 strainCons44way,153 strainCons44way,357 strainCons44way,1704 strainCons44way,1712 unipCov2Chain,115 unipCov2DisulfBond,111 unipCov2Domain,110 unipCov2LocCytopl,110 unipCov2LocExtra,110 unipCov2LocSignal,111 unipCov2LocTransMemb,111 unipCov2Modif,114 unipCov2Mut,111 unipCov2Other,111 unipCov2Repeat,109 unipCov2Struct,113 itself PhyloCSF_smooth,677 PhyloCSFpower,639 Q0_tracks,58 Q1_tracks,60 Q2_tracks,60 Q3_tracks,60 galaxyEna,60 galaxyEnaQ0Ba-1,56 galaxyEnaQ0Ba-1-1,56 galaxyEnaQ0Ba-1-1-11,56 galaxyEnaQ0Ba-1-17,56 galaxyEnaQ0Ba-2,56 galaxyEnaQ1Ay-4,56 galaxyEnaQ1Ay-4-2,56 galaxyEnaQ1Ay-4-2-2,56 galaxyEnaQ1Ay-43,56 galaxyEnaQ1Ba-1-17,56 galaxyEnaQ2Ay-120,56 galaxyEnaQ2Ay-122,56 galaxyEnaQ2Ay-4,56 galaxyEnaQ2Ay-5,56 galaxyEnaQ2Ay-6,56 galaxyEnaQ3Ay-4,56 galaxyEnaQ3Ay-5,56 galaxyEnaQ3Ay-9,56 galaxyEnaQ3B-1-1-7,56 galaxyEnaQ3B-1-617-2,56 iuc Q0_tracks,1129 Q1_tracks,1131 Q2_tracks,1131 Q3_tracks,1131 galaxyEna,1131 galaxyEnaQ0Ba-1,1127 galaxyEnaQ0Ba-1-1,1127 galaxyEnaQ0Ba-1-1-11,1127 galaxyEnaQ0Ba-1-17,1127 galaxyEnaQ0Ba-2,1127 galaxyEnaQ1Ay-4,1127 galaxyEnaQ1Ay-4-2,1127 galaxyEnaQ1Ay-4-2-2,1127 galaxyEnaQ1Ay-43,1127 galaxyEnaQ1Ba-1-17,1127 galaxyEnaQ2Ay-120,1127 galaxyEnaQ2Ay-122,1127 galaxyEnaQ2Ay-4,1127 galaxyEnaQ2Ay-5,1127 galaxyEnaQ2Ay-6,1127 galaxyEnaQ3Ay-4,1127 galaxyEnaQ3Ay-5,1127 galaxyEnaQ3Ay-9,1127 galaxyEnaQ3B-1-1-7,1127 galaxyEnaQ3B-1-617-2,1127 iupac sarsCov2Phylo,762 ivan rnaStructRangan,105 ivt kimIvtCov,161 iwc Q0_tracks,1132 Q1_tracks,1134 Q2_tracks,1134 Q3_tracks,1134 galaxyEna,1134 galaxyEnaQ0Ba-1,1130 galaxyEnaQ0Ba-1-1,1130 galaxyEnaQ0Ba-1-1-11,1130 galaxyEnaQ0Ba-1-17,1130 galaxyEnaQ0Ba-2,1130 galaxyEnaQ1Ay-4,1130 galaxyEnaQ1Ay-4-2,1130 galaxyEnaQ1Ay-4-2-2,1130 galaxyEnaQ1Ay-43,1130 galaxyEnaQ1Ba-1-17,1130 galaxyEnaQ2Ay-120,1130 galaxyEnaQ2Ay-122,1130 galaxyEnaQ2Ay-4,1130 galaxyEnaQ2Ay-5,1130 galaxyEnaQ2Ay-6,1130 galaxyEnaQ3Ay-4,1130 galaxyEnaQ3Ay-5,1130 galaxyEnaQ3Ay-9,1130 galaxyEnaQ3B-1-1-7,1130 galaxyEnaQ3B-1-617-2,1130 j J_121Max,2 J_121Total,2 J_121Total,11 J_15Max,2 J_15Total,2 J_15Total,11 PhyloCSFpower,707 PhyloCSFpower,727 Q0_tracks,1240 Q0_tracks,1266 Q0_tracks,1314 Q1_tracks,1242 Q1_tracks,1268 Q1_tracks,1316 Q2_tracks,1242 Q2_tracks,1268 Q2_tracks,1316 Q3_tracks,1242 Q3_tracks,1268 Q3_tracks,1316 abEscape,740 abEscape,805 bloomEscMabAvg,744 bloomEscMabAvg,809 bloomEscMax,750 bloomEscMax,815 bloomEscSerumAvg,745 bloomEscSerumAvg,810 bloomEscTop,748 bloomEscTop,813 cpgIslandExt,613 cpgIslandExtUnmasked,616 cpgIslandSuper,613 epitopes,321 escape,747 escape,812 galaxyEna,1242 galaxyEna,1268 galaxyEna,1316 galaxyEnaQ0Ba-1,1238 galaxyEnaQ0Ba-1,1264 galaxyEnaQ0Ba-1,1312 galaxyEnaQ0Ba-1-1,1238 galaxyEnaQ0Ba-1-1,1264 galaxyEnaQ0Ba-1-1,1312 galaxyEnaQ0Ba-1-1-11,1238 galaxyEnaQ0Ba-1-1-11,1264 galaxyEnaQ0Ba-1-1-11,1312 galaxyEnaQ0Ba-1-17,1238 galaxyEnaQ0Ba-1-17,1264 galaxyEnaQ0Ba-1-17,1312 galaxyEnaQ0Ba-2,1238 galaxyEnaQ0Ba-2,1264 galaxyEnaQ0Ba-2,1312 galaxyEnaQ1Ay-4,1238 galaxyEnaQ1Ay-4,1264 galaxyEnaQ1Ay-4,1312 galaxyEnaQ1Ay-4-2,1238 galaxyEnaQ1Ay-4-2,1264 galaxyEnaQ1Ay-4-2,1312 galaxyEnaQ1Ay-4-2-2,1238 galaxyEnaQ1Ay-4-2-2,1264 galaxyEnaQ1Ay-4-2-2,1312 galaxyEnaQ1Ay-43,1238 galaxyEnaQ1Ay-43,1264 galaxyEnaQ1Ay-43,1312 galaxyEnaQ1Ba-1-17,1238 galaxyEnaQ1Ba-1-17,1264 galaxyEnaQ1Ba-1-17,1312 galaxyEnaQ2Ay-120,1238 galaxyEnaQ2Ay-120,1264 galaxyEnaQ2Ay-120,1312 galaxyEnaQ2Ay-122,1238 galaxyEnaQ2Ay-122,1264 galaxyEnaQ2Ay-122,1312 galaxyEnaQ2Ay-4,1238 galaxyEnaQ2Ay-4,1264 galaxyEnaQ2Ay-4,1312 galaxyEnaQ2Ay-5,1238 galaxyEnaQ2Ay-5,1264 galaxyEnaQ2Ay-5,1312 galaxyEnaQ2Ay-6,1238 galaxyEnaQ2Ay-6,1264 galaxyEnaQ2Ay-6,1312 galaxyEnaQ3Ay-4,1238 galaxyEnaQ3Ay-4,1264 galaxyEnaQ3Ay-4,1312 galaxyEnaQ3Ay-5,1238 galaxyEnaQ3Ay-5,1264 galaxyEnaQ3Ay-5,1312 galaxyEnaQ3Ay-9,1238 galaxyEnaQ3Ay-9,1264 galaxyEnaQ3Ay-9,1312 galaxyEnaQ3B-1-1-7,1238 galaxyEnaQ3B-1-1-7,1264 galaxyEnaQ3B-1-1-7,1312 galaxyEnaQ3B-1-617-2,1238 galaxyEnaQ3B-1-617-2,1264 galaxyEnaQ3B-1-617-2,1312 genscan,220 mccoy,740 mccoy,805 multiz7way,983 multiz7way,1051 nextstrainClade,243 nextstrainClade,249 nextstrainFreq,378 nextstrainFreq,384 nextstrainGene,192 nextstrainGene,198 nextstrainParsimony,445 nextstrainParsimony,451 nextstrainSamples,998 nextstrainSamples,1004 pdb,136 phyloGenes,559 rappuoli,747 rappuoli,812 recomb,329 resist,55 resist,151 resistPred,243 strainCons119way,2361 strainCons119way,2429 strainCons44way,1956 strainCons44way,2024 vaccines,575 variantMuts,1288 j.virol.2021.02.013 phyloGenes,585 j_121 J_121Max,10 j_15 J_15Max,10 ja iedb,102 jae-yoon microdel,278 jalloh multiz7way,943 strainCons119way,2321 strainCons44way,1916 jan abEscape,723 bloomEscMabAvg,727 bloomEscMax,733 bloomEscSerumAvg,728 bloomEscTop,731 escape,730 gap,15 gold,17 iedb,124 mccoy,723 multiz7way,1003 multiz7way,1028 multiz7way,1268 ncbiGeneBGP,19 ncbiProducts,22 nextstrainFreq,425 nextstrainSamples,1045 nextstrainSamples,1077 pdb,157 rappuoli,730 simpleRepeat,89 strainCons119way,2381 strainCons119way,2406 strainCons119way,2646 strainCons44way,1976 strainCons44way,2001 strainCons44way,2241 unipCov2AliSwissprot,457 unipCov2Chain,686 unipCov2DisulfBond,682 unipCov2Domain,681 unipCov2Interest,340 unipCov2LocCytopl,681 unipCov2LocExtra,681 unipCov2LocSignal,682 unipCov2LocTransMemb,682 unipCov2Modif,685 unipCov2Mut,682 unipCov2Other,682 unipCov2Repeat,680 unipCov2Struct,684 variantAaMuts_BA_2_86,13 variantAaMuts_HK_3,13 variantAaMuts_JN_1,13 variantAaMuts_XBB_1_5_70,13 variantMuts,374 variantMuts,388 variantMuts,484 variantMuts,647 variantNucMuts_BA_2_86,14 variantNucMuts_HK_3,14 variantNucMuts_JN_1,14 variantNucMuts_XBB_1_5_70,14 windowmaskerSdust,108 jan-2021 variantAaMutsV2_B_1_621,8 variantNucMutsV2_B_1_621,8 janeiro variantMuts,1428 january articV4_1,28 sarsCov2Phylo,1007 sarsCov2PhyloPub,1127 variantMuts,452 variantMuts,473 variantMuts,494 variantMuts,527 variantMuts,545 variantMuts,564 variantMuts,1161 variantMuts,1397 japan primers,139 strainCons119way,1155 strainCons119way,1160 strainCons119way,1214 strainCons119way,1219 strainCons119way,1224 jason addgene,243 kimTranscripts,451 primers,380 transcriptome,457 jbloomlab abEscape,575 abEscape,606 bloomEscMabAvg,579 bloomEscMabAvg,610 bloomEscMax,585 bloomEscMax,616 bloomEscSerumAvg,580 bloomEscSerumAvg,611 bloomEscTop,583 bloomEscTop,614 escape,582 escape,613 mccoy,575 mccoy,606 rappuoli,582 rappuoli,613 jc PhyloCSF_smooth,741 variantMuts,1331 jd abEscape,703 abEscape,840 bloomEscMabAvg,707 bloomEscMabAvg,844 bloomEscMax,713 bloomEscMax,850 bloomEscSerumAvg,708 bloomEscSerumAvg,845 bloomEscTop,711 bloomEscTop,848 escape,710 escape,847 mccoy,703 mccoy,840 problematicSites,596 rappuoli,710 rappuoli,847 sarsCov2Phylo,1107 je Starr_Bloom,253 Starr_Bloom_bind,247 jena rfam,119 jeong vaccines,493 jerry variantMuts,1485 jesse Starr_Bloom,10 Starr_Bloom_bind,11 jian icshape,187 jiang pbmShanghai,500 jianwei icshape,203 jiao igg,13 igm,13 pbmShanghai,22 jiayu IgG_Z-score-_COVID-19_patients,416 IgM_Z-score-_COVID-19_patients,416 bpmIggCovidSum,425 bpmIgmCovidSum,425 pbm,425 jim multiz7way,880 strainCons119way,2258 strainCons44way,1853 jiyuan-84 strainCons44way,1053 jm PhyloCSF_smooth,733 PhyloCSF_smooth,739 PhyloCSFpower,699 PhyloCSFpower,705 jn.1 variantAaMuts_JN_1,2 variantAaMuts_JN_1,6 variantMuts,615 variantMuts,1157 variantNucMuts_JN_1,2 variantNucMuts_JN_1,7 jochum treangen,295 john abEscape,788 bloomEscMabAvg,792 bloomEscMax,798 bloomEscSerumAvg,793 bloomEscTop,796 escape,795 mccoy,788 rappuoli,795 johnson abEscape,869 bloomEscMabAvg,873 bloomEscMax,879 bloomEscSerumAvg,874 bloomEscTop,877 escape,876 mccoy,869 rappuoli,876 variantMuts,1332 join Q0_tracks,1165 Q1_tracks,1167 Q2_tracks,1167 Q3_tracks,1167 galaxyEna,1167 galaxyEnaQ0Ba-1,1163 galaxyEnaQ0Ba-1-1,1163 galaxyEnaQ0Ba-1-1-11,1163 galaxyEnaQ0Ba-1-17,1163 galaxyEnaQ0Ba-2,1163 galaxyEnaQ1Ay-4,1163 galaxyEnaQ1Ay-4-2,1163 galaxyEnaQ1Ay-4-2-2,1163 galaxyEnaQ1Ay-43,1163 galaxyEnaQ1Ba-1-17,1163 galaxyEnaQ2Ay-120,1163 galaxyEnaQ2Ay-122,1163 galaxyEnaQ2Ay-4,1163 galaxyEnaQ2Ay-5,1163 galaxyEnaQ2Ay-6,1163 galaxyEnaQ3Ay-4,1163 galaxyEnaQ3Ay-5,1163 galaxyEnaQ3Ay-9,1163 galaxyEnaQ3B-1-1-7,1163 galaxyEnaQ3B-1-617-2,1163 joined gordon2,240 joining multiz7way,751 strainCons119way,1511 strainCons44way,1181 joint Q0_tracks,1115 Q1_tracks,1117 Q2_tracks,1117 Q3_tracks,1117 galaxyEna,1117 galaxyEnaQ0Ba-1,1113 galaxyEnaQ0Ba-1-1,1113 galaxyEnaQ0Ba-1-1-11,1113 galaxyEnaQ0Ba-1-17,1113 galaxyEnaQ0Ba-2,1113 galaxyEnaQ1Ay-4,1113 galaxyEnaQ1Ay-4-2,1113 galaxyEnaQ1Ay-4-2-2,1113 galaxyEnaQ1Ay-43,1113 galaxyEnaQ1Ba-1-17,1113 galaxyEnaQ2Ay-120,1113 galaxyEnaQ2Ay-122,1113 galaxyEnaQ2Ay-4,1113 galaxyEnaQ2Ay-5,1113 galaxyEnaQ2Ay-6,1113 galaxyEnaQ3Ay-4,1113 galaxyEnaQ3Ay-5,1113 galaxyEnaQ3Ay-9,1113 galaxyEnaQ3B-1-1-7,1113 galaxyEnaQ3B-1-617-2,1113 journal.ppat.1008643 Q0_tracks,1296 Q1_tracks,1298 Q2_tracks,1298 Q3_tracks,1298 galaxyEna,1298 galaxyEnaQ0Ba-1,1294 galaxyEnaQ0Ba-1-1,1294 galaxyEnaQ0Ba-1-1-11,1294 galaxyEnaQ0Ba-1-17,1294 galaxyEnaQ0Ba-2,1294 galaxyEnaQ1Ay-4,1294 galaxyEnaQ1Ay-4-2,1294 galaxyEnaQ1Ay-4-2-2,1294 galaxyEnaQ1Ay-43,1294 galaxyEnaQ1Ba-1-17,1294 galaxyEnaQ2Ay-120,1294 galaxyEnaQ2Ay-122,1294 galaxyEnaQ2Ay-4,1294 galaxyEnaQ2Ay-5,1294 galaxyEnaQ2Ay-6,1294 galaxyEnaQ3Ay-4,1294 galaxyEnaQ3Ay-5,1294 galaxyEnaQ3Ay-9,1294 galaxyEnaQ3B-1-1-7,1294 galaxyEnaQ3B-1-617-2,1294 js kimIvtCov,178 kimTranscripts,465 multiz7way,1041 strainCons119way,2419 strainCons44way,2014 transcriptome,471 jt sarsCov2Phylo,944 sarsCov2PhyloPub,1064 variantMuts,1251 ju icshape,186 jul PhyloCSF_smooth,723 cpgIslandExt,617 cpgIslandExtUnmasked,620 cpgIslandSuper,617 pyle,305 pyle,332 treangen,327 julia variantMuts,1478 july icshape,228 problematicSites,295 problematicSites,585 sarsCov2Phylo,1096 sarsCov2PhyloPub,1216 variantMuts,505 variantMuts,605 jumps kimTranscripts,58 transcriptome,50 jun PhyloCSF_smooth,804 potPathoIndel,237 june articV4,28 microdel,28 microdel,80 phyloGenes,455 problematicSites,581 problematicSites,608 sarsCov2Phylo,1009 sarsCov2Phylo,1092 sarsCov2Phylo,1119 sarsCov2PhyloPub,1129 sarsCov2PhyloPub,1212 variantMuts,590 jung microdel,279 jungreis PhyloCSF_smooth,375 PhyloCSF_smooth,683 PhyloCSF_smooth,698 PhyloCSF_smooth,705 PhyloCSF_smooth,734 PhyloCSF_smooth,781 PhyloCSFpower,391 PhyloCSFpower,645 PhyloCSFpower,665 PhyloCSFpower,674 PhyloCSFpower,700 PhyloCSFpower,756 phyloGenes,474 phyloGenes,486 phyloGenes,495 phyloGenes,523 phyloGenes,548 phyloGenes,587 just abEscape,238 bloomEscMabAvg,242 bloomEscMax,248 bloomEscSerumAvg,243 bloomEscTop,246 escape,245 mccoy,238 rappuoli,245 strainCons119way,198 strainCons44way,146 justin rnaStructRangan,88 justus rfam,137 jw cd8escape,202 kimIvtCov,180 kimTranscripts,467 transcriptome,473 jx993987v1 strainCons44way,1243 jx993988v1 strainCons44way,1235 jy kimIvtCov,176 kimTranscripts,463 transcriptome,469 jz abEscape,838 bloomEscMabAvg,842 bloomEscMax,848 bloomEscSerumAvg,843 bloomEscTop,846 escape,845 mccoy,838 rappuoli,845 k K_103Max,2 K_103Total,2 K_103Total,11 K_29Max,2 K_29Total,2 K_29Total,11 Q0_tracks,1336 Q1_tracks,1338 Q2_tracks,1338 Q3_tracks,1338 abEscape,695 abEscape,699 augustusGene,268 bloomEscMabAvg,699 bloomEscMabAvg,703 bloomEscMax,705 bloomEscMax,709 bloomEscSerumAvg,700 bloomEscSerumAvg,704 bloomEscTop,703 bloomEscTop,707 escape,702 escape,706 galaxyEna,1338 galaxyEnaQ0Ba-1,1334 galaxyEnaQ0Ba-1-1,1334 galaxyEnaQ0Ba-1-1-11,1334 galaxyEnaQ0Ba-1-17,1334 galaxyEnaQ0Ba-2,1334 galaxyEnaQ1Ay-4,1334 galaxyEnaQ1Ay-4-2,1334 galaxyEnaQ1Ay-4-2-2,1334 galaxyEnaQ1Ay-43,1334 galaxyEnaQ1Ba-1-17,1334 galaxyEnaQ2Ay-120,1334 galaxyEnaQ2Ay-122,1334 galaxyEnaQ2Ay-4,1334 galaxyEnaQ2Ay-5,1334 galaxyEnaQ2Ay-6,1334 galaxyEnaQ3Ay-4,1334 galaxyEnaQ3Ay-5,1334 galaxyEnaQ3Ay-9,1334 galaxyEnaQ3B-1-1-7,1334 galaxyEnaQ3B-1-617-2,1334 mccoy,695 mccoy,699 multiz7way,1047 multiz7way,1182 phyloGenes,561 rappuoli,702 rappuoli,706 recomb,335 sarsCov2Phylo,1022 sarsCov2PhyloPub,1142 strainCons119way,2425 strainCons119way,2560 strainCons44way,2020 strainCons44way,2155 k1 cpgIslandExt,484 cpgIslandExtUnmasked,487 cpgIslandSuper,484 vaccines,333 k2 cpgIslandExt,486 cpgIslandExtUnmasked,489 cpgIslandSuper,486 vaccines,335 k986p vaccines,456 k_103 K_103Max,10 k_29 K_29Max,10 k_bind_avg K_bind_avg,1 k_expr_avg K_expr_avg_Expression,1 kanneh multiz7way,941 strainCons119way,2319 strainCons44way,1914 kappa nextstrainFreq21B_Kappa,2 nextstrainFreq21B_Kappa,5 nextstrainSamples21B_Kappa,2 nextstrainSamples21B_Kappa,8 variantAaMutsV2_B_1_617_1,1 variantAaMutsV2_B_1_617_1,4 variantMuts,705 variantMuts,1079 variantNucMutsV2_B_1_617_1,1 variantNucMutsV2_B_1_617_1,4 karen vaccines,496 kari vaccines,502 karlin genscan,148 genscan,209 karthik variantMuts,1467 kasif genscan,193 kate multiz7way,914 strainCons119way,2292 strainCons44way,1887 variantMuts,1235 katoh sarsCov2Phylo,609 sarsCov2Phylo,1021 sarsCov2PhyloPub,636 sarsCov2PhyloPub,1141 kay PhyloCSF_smooth,742 PhyloCSFpower,708 kb swift,50 kd-tree multiz7way,663 strainCons119way,1012 strainCons44way,960 keener Q0_tracks,1252 Q1_tracks,1254 Q2_tracks,1254 Q3_tracks,1254 galaxyEna,1254 galaxyEnaQ0Ba-1,1250 galaxyEnaQ0Ba-1-1,1250 galaxyEnaQ0Ba-1-1-11,1250 galaxyEnaQ0Ba-1-17,1250 galaxyEnaQ0Ba-2,1250 galaxyEnaQ1Ay-4,1250 galaxyEnaQ1Ay-4-2,1250 galaxyEnaQ1Ay-4-2-2,1250 galaxyEnaQ1Ay-43,1250 galaxyEnaQ1Ba-1-17,1250 galaxyEnaQ2Ay-120,1250 galaxyEnaQ2Ay-122,1250 galaxyEnaQ2Ay-4,1250 galaxyEnaQ2Ay-5,1250 galaxyEnaQ2Ay-6,1250 galaxyEnaQ3Ay-4,1250 galaxyEnaQ3Ay-5,1250 galaxyEnaQ3Ay-9,1250 galaxyEnaQ3B-1-1-7,1250 galaxyEnaQ3B-1-617-2,1250 variantMuts,1234 keep cpgIslandExt,125 cpgIslandExtUnmasked,128 cpgIslandSuper,125 kelley microdel,272 kellis PhyloCSF_smooth,707 PhyloCSF_smooth,785 PhyloCSFpower,677 PhyloCSFpower,730 PhyloCSFpower,761 phyloGenes,498 phyloGenes,527 phyloGenes,563 phyloGenes,591 kent multiz7way,881 multiz7way,1126 multiz7way,1169 multiz7way,1247 strainCons119way,2259 strainCons119way,2504 strainCons119way,2547 strainCons119way,2625 strainCons44way,1854 strainCons44way,2099 strainCons44way,2142 strainCons44way,2220 vaccines,346 vaccines,403 kept pdb,131 kevin microdel,276 rfam,111 key Q0_tracks,226 Q0_tracks,956 Q1_tracks,228 Q1_tracks,958 Q2_tracks,228 Q2_tracks,958 Q3_tracks,228 Q3_tracks,958 galaxyEna,228 galaxyEna,958 galaxyEnaQ0Ba-1,224 galaxyEnaQ0Ba-1,954 galaxyEnaQ0Ba-1-1,224 galaxyEnaQ0Ba-1-1,954 galaxyEnaQ0Ba-1-1-11,224 galaxyEnaQ0Ba-1-1-11,954 galaxyEnaQ0Ba-1-17,224 galaxyEnaQ0Ba-1-17,954 galaxyEnaQ0Ba-2,224 galaxyEnaQ0Ba-2,954 galaxyEnaQ1Ay-4,224 galaxyEnaQ1Ay-4,954 galaxyEnaQ1Ay-4-2,224 galaxyEnaQ1Ay-4-2,954 galaxyEnaQ1Ay-4-2-2,224 galaxyEnaQ1Ay-4-2-2,954 galaxyEnaQ1Ay-43,224 galaxyEnaQ1Ay-43,954 galaxyEnaQ1Ba-1-17,224 galaxyEnaQ1Ba-1-17,954 galaxyEnaQ2Ay-120,224 galaxyEnaQ2Ay-120,954 galaxyEnaQ2Ay-122,224 galaxyEnaQ2Ay-122,954 galaxyEnaQ2Ay-4,224 galaxyEnaQ2Ay-4,954 galaxyEnaQ2Ay-5,224 galaxyEnaQ2Ay-5,954 galaxyEnaQ2Ay-6,224 galaxyEnaQ2Ay-6,954 galaxyEnaQ3Ay-4,224 galaxyEnaQ3Ay-4,954 galaxyEnaQ3Ay-5,224 galaxyEnaQ3Ay-5,954 galaxyEnaQ3Ay-9,224 galaxyEnaQ3Ay-9,954 galaxyEnaQ3B-1-1-7,224 galaxyEnaQ3B-1-1-7,954 galaxyEnaQ3B-1-617-2,224 galaxyEnaQ3B-1-617-2,954 nextstrainSamples,201 spikeMuts,28 kf367457v1 strainCons44way,1213 kf569996v1 strainCons44way,1233 kg multiz7way,936 strainCons119way,2314 strainCons44way,1909 kgxref unipCov2AliSwissprot,240 khd Starr_Bloom,247 Starr_Bloom_bind,241 abEscape,744 bloomEscMabAvg,748 bloomEscMax,754 bloomEscSerumAvg,749 bloomEscTop,752 escape,751 mccoy,744 rappuoli,751 kiley crisprDet,154 kill cd8escape,24 kim Kim_RNAs,1 Kim_RNAs,10 Kim_TRS_sgmRNAs,1 Kim_TRS_sgmRNAs,10 Kim_non-TRS_sgmRNAs,1 Kim_non-TRS_sgmRNAs,10 kimIvtCov,10 kimIvtCov,27 kimIvtCov,115 kimIvtCov,125 kimIvtCov,129 kimIvtCov,144 kimIvtCov,148 kimIvtCov,173 kimIvtCov,179 kimIvtCov,181 kimMgiNc3p,4 kimMgiNc5p,4 kimNp,7 kimNp,38 kimRnaMod,8 kimRnaMod,39 kimTranscripts,10 kimTranscripts,133 kimTranscripts,147 kimTranscripts,152 kimTranscripts,195 kimTranscripts,238 kimTranscripts,247 kimTranscripts,279 kimTranscripts,288 kimTranscripts,304 kimTranscripts,460 kimTranscripts,466 kimTranscripts,468 transcriptome,261 transcriptome,331 transcriptome,466 transcriptome,472 transcriptome,474 kim2020 kimTranscripts,422 transcriptome,428 kim2020.bb kimRnaMod,205 kim_trs.bb kimTranscripts,423 kind Q0_tracks,157 Q1_tracks,159 Q2_tracks,159 Q3_tracks,159 galaxyEna,159 galaxyEnaQ0Ba-1,155 galaxyEnaQ0Ba-1-1,155 galaxyEnaQ0Ba-1-1-11,155 galaxyEnaQ0Ba-1-17,155 galaxyEnaQ0Ba-2,155 galaxyEnaQ1Ay-4,155 galaxyEnaQ1Ay-4-2,155 galaxyEnaQ1Ay-4-2-2,155 galaxyEnaQ1Ay-43,155 galaxyEnaQ1Ba-1-17,155 galaxyEnaQ2Ay-120,155 galaxyEnaQ2Ay-122,155 galaxyEnaQ2Ay-4,155 galaxyEnaQ2Ay-5,155 galaxyEnaQ2Ay-6,155 galaxyEnaQ3Ay-4,155 galaxyEnaQ3Ay-5,155 galaxyEnaQ3Ay-9,155 galaxyEnaQ3B-1-1-7,155 galaxyEnaQ3B-1-617-2,155 king primers,151 kingdom variantMuts,276 kit primers,5 swift,27 kits primers,22 kj473812v1 strainCons44way,1238 kj473814v1 strainCons44way,1242 kj473815v1 strainCons44way,1210 kj473816v1 strainCons44way,1227 km multiz7way,1178 strainCons119way,2556 strainCons44way,2151 kng strainCons119way,1127 strainCons119way,1132 known gold,121 mRNAs,1 pdb,21 problematicSites,300 problematicSites,321 resist,24 koblischke cd8escape,189 komissarov sarsCov2Phylo,980 sarsCov2PhyloPub,1100 koonin potPathoIndel,219 korea strainCons119way,1272 korogeno-est Q0_tracks,1221 Q1_tracks,1223 Q2_tracks,1223 Q3_tracks,1223 galaxyEna,1223 galaxyEnaQ0Ba-1,1219 galaxyEnaQ0Ba-1-1,1219 galaxyEnaQ0Ba-1-1-11,1219 galaxyEnaQ0Ba-1-17,1219 galaxyEnaQ0Ba-2,1219 galaxyEnaQ1Ay-4,1219 galaxyEnaQ1Ay-4-2,1219 galaxyEnaQ1Ay-4-2-2,1219 galaxyEnaQ1Ay-43,1219 galaxyEnaQ1Ba-1-17,1219 galaxyEnaQ2Ay-120,1219 galaxyEnaQ2Ay-122,1219 galaxyEnaQ2Ay-4,1219 galaxyEnaQ2Ay-5,1219 galaxyEnaQ2Ay-6,1219 galaxyEnaQ3Ay-4,1219 galaxyEnaQ3Ay-5,1219 galaxyEnaQ3Ay-9,1219 galaxyEnaQ3B-1-1-7,1219 galaxyEnaQ3B-1-617-2,1219 kosakovsky Q0_tracks,1258 Q1_tracks,1260 Q2_tracks,1260 Q3_tracks,1260 galaxyEna,1260 galaxyEnaQ0Ba-1,1256 galaxyEnaQ0Ba-1-1,1256 galaxyEnaQ0Ba-1-1-11,1256 galaxyEnaQ0Ba-1-17,1256 galaxyEnaQ0Ba-2,1256 galaxyEnaQ1Ay-4,1256 galaxyEnaQ1Ay-4-2,1256 galaxyEnaQ1Ay-4-2-2,1256 galaxyEnaQ1Ay-43,1256 galaxyEnaQ1Ba-1-17,1256 galaxyEnaQ2Ay-120,1256 galaxyEnaQ2Ay-122,1256 galaxyEnaQ2Ay-4,1256 galaxyEnaQ2Ay-5,1256 galaxyEnaQ2Ay-6,1256 galaxyEnaQ3Ay-4,1256 galaxyEnaQ3Ay-5,1256 galaxyEnaQ3Ay-9,1256 galaxyEnaQ3B-1-1-7,1256 galaxyEnaQ3B-1-617-2,1256 kp886808v1 strainCons44way,1231 kr multiz7way,1014 strainCons119way,2392 strainCons44way,1987 kristian variantMuts,1487 krogan phyloGenes,557 ks multiz7way,1010 strainCons119way,2388 strainCons44way,1983 kt444582v1 strainCons44way,1221 ku973692v1 strainCons44way,1234 kui icshape,195 ky strainCons119way,1161 ky352407v1 strainCons44way,1244 ky417142v1 strainCons44way,1217 ky417143v1 strainCons44way,1222 ky417144v1 strainCons44way,1214 ky417145v1 strainCons44way,1228 ky417146v1 strainCons44way,1224 ky417147v1 strainCons44way,1225 ky417148v1 strainCons44way,1226 ky417149v1 strainCons44way,1223 ky417151v1 strainCons44way,1215 ky417152v1 strainCons44way,1216 ky770858v1 strainCons44way,1212 ky770860v1 strainCons44way,1239 ky938558v1 strainCons44way,1240 l PhyloCSFpower,719 Q0_tracks,1335 Q1_tracks,1337 Q2_tracks,1337 Q3_tracks,1337 abEscape,868 bloomEscMabAvg,872 bloomEscMax,878 bloomEscSerumAvg,873 bloomEscTop,876 cd8escape,204 cpgIslandExt,600 cpgIslandExtUnmasked,603 cpgIslandSuper,600 escape,875 galaxyEna,1337 galaxyEnaQ0Ba-1,1333 galaxyEnaQ0Ba-1-1,1333 galaxyEnaQ0Ba-1-1-11,1333 galaxyEnaQ0Ba-1-17,1333 galaxyEnaQ0Ba-2,1333 galaxyEnaQ1Ay-4,1333 galaxyEnaQ1Ay-4-2,1333 galaxyEnaQ1Ay-4-2-2,1333 galaxyEnaQ1Ay-43,1333 galaxyEnaQ1Ba-1-17,1333 galaxyEnaQ2Ay-120,1333 galaxyEnaQ2Ay-122,1333 galaxyEnaQ2Ay-4,1333 galaxyEnaQ2Ay-5,1333 galaxyEnaQ2Ay-6,1333 galaxyEnaQ3Ay-4,1333 galaxyEnaQ3Ay-5,1333 galaxyEnaQ3Ay-9,1333 galaxyEnaQ3B-1-1-7,1333 galaxyEnaQ3B-1-617-2,1333 iedb,100 mccoy,868 multiz7way,596 multiz7way,942 multiz7way,1174 problematicSites,546 problematicSites,564 problematicSites,592 rappuoli,875 sarsCov2Phylo,191 sarsCov2Phylo,949 sarsCov2Phylo,1057 sarsCov2Phylo,1075 sarsCov2Phylo,1103 sarsCov2PhyloPub,198 sarsCov2PhyloPub,1069 sarsCov2PhyloPub,1177 sarsCov2PhyloPub,1195 sarsCov2PhyloPub,1228 strainCons119way,946 strainCons119way,2320 strainCons119way,2552 strainCons44way,894 strainCons44way,1915 strainCons44way,2147 vaccines,571 variantMuts,919 variantMuts,1256 variantMuts,1335 variantMuts,1479 l452r spikeMuts,129 variantMuts,738 l453r spikeMuts,265 l_bind_avg L_bind_avg,1 l_expr_avg L_expr_avg_Expression,1 la vaccines,646 lab abEscape,63 abEscape,89 abEscape,115 abEscape,134 abEscape,155 abEscape,188 abEscape,215 abEscape,234 abEscape,273 abEscape,500 abEscape,529 abEscape,541 abEscape,640 augustusGene,252 bloomEscMabAvg,5 bloomEscMabAvg,67 bloomEscMabAvg,93 bloomEscMabAvg,119 bloomEscMabAvg,138 bloomEscMabAvg,159 bloomEscMabAvg,192 bloomEscMabAvg,219 bloomEscMabAvg,238 bloomEscMabAvg,277 bloomEscMabAvg,504 bloomEscMabAvg,533 bloomEscMabAvg,545 bloomEscMabAvg,644 bloomEscMax,5 bloomEscMax,73 bloomEscMax,99 bloomEscMax,125 bloomEscMax,144 bloomEscMax,165 bloomEscMax,198 bloomEscMax,225 bloomEscMax,244 bloomEscMax,283 bloomEscMax,510 bloomEscMax,539 bloomEscMax,551 bloomEscMax,650 bloomEscSerumAvg,5 bloomEscSerumAvg,68 bloomEscSerumAvg,94 bloomEscSerumAvg,120 bloomEscSerumAvg,139 bloomEscSerumAvg,160 bloomEscSerumAvg,193 bloomEscSerumAvg,220 bloomEscSerumAvg,239 bloomEscSerumAvg,278 bloomEscSerumAvg,505 bloomEscSerumAvg,534 bloomEscSerumAvg,546 bloomEscSerumAvg,645 bloomEscTop,5 bloomEscTop,71 bloomEscTop,97 bloomEscTop,123 bloomEscTop,142 bloomEscTop,163 bloomEscTop,196 bloomEscTop,223 bloomEscTop,242 bloomEscTop,281 bloomEscTop,508 bloomEscTop,537 bloomEscTop,549 bloomEscTop,648 bloomEscTotal,5 cas13Crispr,485 crisprDet,90 crisprDet,116 escape,5 escape,70 escape,96 escape,122 escape,141 escape,162 escape,195 escape,222 escape,241 escape,280 escape,507 escape,536 escape,548 escape,647 mccoy,4 mccoy,63 mccoy,89 mccoy,115 mccoy,134 mccoy,155 mccoy,188 mccoy,215 mccoy,234 mccoy,273 mccoy,500 mccoy,529 mccoy,541 mccoy,640 multiz7way,871 primers,202 pyle,23 rappuoli,5 rappuoli,70 rappuoli,96 rappuoli,122 rappuoli,141 rappuoli,162 rappuoli,195 rappuoli,222 rappuoli,241 rappuoli,280 rappuoli,507 rappuoli,536 rappuoli,548 rappuoli,647 resistPred,259 spikeMuts,194 strainCons119way,2249 strainCons44way,1844 vaccines,51 vaccines,67 vaccines,208 vaccines,620 label addgene,125 genscan,98 resistPred,11 resistPred,121 variantMuts,254 labeled Q0_tracks,477 Q1_tracks,479 Q2_tracks,479 Q3_tracks,479 abEscape,504 abEscape,535 abEscape,545 bloomEscMabAvg,508 bloomEscMabAvg,539 bloomEscMabAvg,549 bloomEscMax,514 bloomEscMax,545 bloomEscMax,555 bloomEscSerumAvg,509 bloomEscSerumAvg,540 bloomEscSerumAvg,550 bloomEscTop,512 bloomEscTop,543 bloomEscTop,553 escape,511 escape,542 escape,552 galaxyEna,479 galaxyEnaQ0Ba-1,475 galaxyEnaQ0Ba-1-1,475 galaxyEnaQ0Ba-1-1-11,475 galaxyEnaQ0Ba-1-17,475 galaxyEnaQ0Ba-2,475 galaxyEnaQ1Ay-4,475 galaxyEnaQ1Ay-4-2,475 galaxyEnaQ1Ay-4-2-2,475 galaxyEnaQ1Ay-43,475 galaxyEnaQ1Ba-1-17,475 galaxyEnaQ2Ay-120,475 galaxyEnaQ2Ay-122,475 galaxyEnaQ2Ay-4,475 galaxyEnaQ2Ay-5,475 galaxyEnaQ2Ay-6,475 galaxyEnaQ3Ay-4,475 galaxyEnaQ3Ay-5,475 galaxyEnaQ3Ay-9,475 galaxyEnaQ3B-1-1-7,475 galaxyEnaQ3B-1-617-2,475 gordon2,98 mccoy,504 mccoy,535 mccoy,545 multiz7way,66 pdb,69 poranHla1,89 poranHla2,89 problematicSites,169 rappuoli,511 rappuoli,542 rappuoli,552 strainCons119way,407 strainCons44way,355 unipCov2AliSwissprot,83 unipCov2Chain,268 unipCov2DisulfBond,264 unipCov2Domain,263 unipCov2Interest,55 unipCov2LocCytopl,263 unipCov2LocExtra,263 unipCov2LocSignal,264 unipCov2LocTransMemb,264 unipCov2Modif,267 unipCov2Mut,264 unipCov2Other,264 unipCov2Repeat,262 unipCov2Struct,266 labels IgG_Z-score-_COVID-19_patients,108 IgM_Z-score-_COVID-19_patients,108 bpmIggCovidSum,117 bpmIgmCovidSum,117 pbm,117 pbmShanghai,174 variantMuts,1082 variantMuts,1092 laboratories microdel,222 problematicSites,234 problematicSites,440 sarsCov2PhyloPub,44 sarsCov2PhyloPub,929 sarsCov2PhyloPub,943 laboratory multiz7way,864 primers,248 primers,257 problematicSites,205 problematicSites,396 strainCons119way,2242 strainCons44way,1837 labs crisprDet,146 microdel,193 nextstrainClade,131 nextstrainFreq,143 nextstrainGene,101 nextstrainParsimony,300 nextstrainSamples,611 primers,59 problematicSites,345 variantMuts,1214 lactimidomycin Calu3_07hpi,144 ORFs,142 Vero6_05hpi,144 Vero6_24hpi,144 weizmanOrfs,150 lai pbmShanghai,496 laine cas13Crispr,499 lakshmi poranHla1,268 poranHla2,268 lambda nextstrainFreq21G_Lambda,2 nextstrainFreq21G_Lambda,5 nextstrainSamples21G_Lambda,2 nextstrainSamples21G_Lambda,8 variantAaMutsV2_C_37,1 variantAaMutsV2_C_37,4 variantMuts,627 variantMuts,1061 variantNucMutsV2_C_37,1 variantNucMutsV2_C_37,4 lamkiewicz rfam,112 landscape abEscape,807 bloomEscMabAvg,811 bloomEscMax,817 bloomEscSerumAvg,812 bloomEscTop,815 escape,814 mccoy,807 rappuoli,814 recomb,351 lanfear problematicSites,569 recomb,341 sarsCov2Phylo,78 sarsCov2Phylo,566 sarsCov2Phylo,859 sarsCov2Phylo,1080 sarsCov2PhyloPub,94 sarsCov2PhyloPub,591 sarsCov2PhyloPub,965 sarsCov2PhyloPub,1039 sarsCov2PhyloPub,1200 sarsCov2PhyloPub,1229 variantMuts,1192 variantMuts,1432 langone microdel,124 microdel,248 large Q0_tracks,1122 Q1_tracks,1124 Q2_tracks,1124 Q3_tracks,1124 galaxyEna,1124 galaxyEnaQ0Ba-1,1120 galaxyEnaQ0Ba-1-1,1120 galaxyEnaQ0Ba-1-1-11,1120 galaxyEnaQ0Ba-1-17,1120 galaxyEnaQ0Ba-2,1120 galaxyEnaQ1Ay-4,1120 galaxyEnaQ1Ay-4-2,1120 galaxyEnaQ1Ay-4-2-2,1120 galaxyEnaQ1Ay-43,1120 galaxyEnaQ1Ba-1-17,1120 galaxyEnaQ2Ay-120,1120 galaxyEnaQ2Ay-122,1120 galaxyEnaQ2Ay-4,1120 galaxyEnaQ2Ay-5,1120 galaxyEnaQ2Ay-6,1120 galaxyEnaQ3Ay-4,1120 galaxyEnaQ3Ay-5,1120 galaxyEnaQ3Ay-9,1120 galaxyEnaQ3B-1-1-7,1120 galaxyEnaQ3B-1-617-2,1120 nextstrainSamples,539 sarsCov2Phylo,1132 sarsCov2PhyloPub,1265 largely spikeMuts,384 larger strainCons119way,1999 strainCons44way,1594 lariviere Q0_tracks,1254 Q1_tracks,1256 Q2_tracks,1256 Q3_tracks,1256 galaxyEna,1256 galaxyEnaQ0Ba-1,1252 galaxyEnaQ0Ba-1-1,1252 galaxyEnaQ0Ba-1-1-11,1252 galaxyEnaQ0Ba-1-17,1252 galaxyEnaQ0Ba-2,1252 galaxyEnaQ1Ay-4,1252 galaxyEnaQ1Ay-4-2,1252 galaxyEnaQ1Ay-4-2-2,1252 galaxyEnaQ1Ay-43,1252 galaxyEnaQ1Ba-1-17,1252 galaxyEnaQ2Ay-120,1252 galaxyEnaQ2Ay-122,1252 galaxyEnaQ2Ay-4,1252 galaxyEnaQ2Ay-5,1252 galaxyEnaQ2Ay-6,1252 galaxyEnaQ3Ay-4,1252 galaxyEnaQ3Ay-5,1252 galaxyEnaQ3Ay-9,1252 galaxyEnaQ3B-1-1-7,1252 galaxyEnaQ3B-1-617-2,1252 last Q0_tracks,1073 Q1_tracks,1075 Q2_tracks,1075 Q3_tracks,1075 galaxyEna,1075 galaxyEnaQ0Ba-1,1071 galaxyEnaQ0Ba-1-1,1071 galaxyEnaQ0Ba-1-1-11,1071 galaxyEnaQ0Ba-1-17,1071 galaxyEnaQ0Ba-2,1071 galaxyEnaQ1Ay-4,1071 galaxyEnaQ1Ay-4-2,1071 galaxyEnaQ1Ay-4-2-2,1071 galaxyEnaQ1Ay-43,1071 galaxyEnaQ1Ba-1-17,1071 galaxyEnaQ2Ay-120,1071 galaxyEnaQ2Ay-122,1071 galaxyEnaQ2Ay-4,1071 galaxyEnaQ2Ay-5,1071 galaxyEnaQ2Ay-6,1071 galaxyEnaQ3Ay-4,1071 galaxyEnaQ3Ay-5,1071 galaxyEnaQ3Ay-9,1071 galaxyEnaQ3B-1-1-7,1071 galaxyEnaQ3B-1-617-2,1071 icshape,48 lastz multiz7way,583 multiz7way,590 multiz7way,824 multiz7way,1209 strainCons119way,933 strainCons119way,940 strainCons119way,2202 strainCons119way,2587 strainCons44way,881 strainCons44way,888 strainCons44way,1797 strainCons44way,2182 latest Q0_tracks,315 Q1_tracks,317 Q2_tracks,317 Q3_tracks,317 galaxyEna,317 galaxyEnaQ0Ba-1,313 galaxyEnaQ0Ba-1-1,313 galaxyEnaQ0Ba-1-1-11,313 galaxyEnaQ0Ba-1-17,313 galaxyEnaQ0Ba-2,313 galaxyEnaQ1Ay-4,313 galaxyEnaQ1Ay-4-2,313 galaxyEnaQ1Ay-4-2-2,313 galaxyEnaQ1Ay-43,313 galaxyEnaQ1Ba-1-17,313 galaxyEnaQ2Ay-120,313 galaxyEnaQ2Ay-122,313 galaxyEnaQ2Ay-4,313 galaxyEnaQ2Ay-5,313 galaxyEnaQ2Ay-6,313 galaxyEnaQ3Ay-4,313 galaxyEnaQ3Ay-5,313 galaxyEnaQ3Ay-9,313 galaxyEnaQ3B-1-1-7,313 galaxyEnaQ3B-1-617-2,313 problematicSites,219 rfam,101 latif variantMuts,1474 laura abEscape,773 bloomEscMabAvg,777 bloomEscMax,783 bloomEscSerumAvg,778 bloomEscTop,781 escape,780 mccoy,773 rappuoli,780 variantMuts,1495 laydon variantMuts,1338 layout Q0_tracks,104 Q1_tracks,106 Q2_tracks,106 Q3_tracks,106 galaxyEna,106 galaxyEnaQ0Ba-1,102 galaxyEnaQ0Ba-1-1,102 galaxyEnaQ0Ba-1-1-11,102 galaxyEnaQ0Ba-1-17,102 galaxyEnaQ0Ba-2,102 galaxyEnaQ1Ay-4,102 galaxyEnaQ1Ay-4-2,102 galaxyEnaQ1Ay-4-2-2,102 galaxyEnaQ1Ay-43,102 galaxyEnaQ1Ba-1-17,102 galaxyEnaQ2Ay-120,102 galaxyEnaQ2Ay-122,102 galaxyEnaQ2Ay-4,102 galaxyEnaQ2Ay-5,102 galaxyEnaQ2Ay-6,102 galaxyEnaQ3Ay-4,102 galaxyEnaQ3Ay-5,102 galaxyEnaQ3Ay-9,102 galaxyEnaQ3B-1-1-7,102 galaxyEnaQ3B-1-617-2,102 lc168 igg_Ctrl_LC168,2 igg_Ctrl_LC168,4 igm_Ctrl_LC168,2 igm_Ctrl_LC168,4 lc169 igg_Ctrl_LC169,2 igg_Ctrl_LC169,4 igm_Ctrl_LC169,2 igm_Ctrl_LC169,4 lc171 igg_Ctrl_LC171,2 igg_Ctrl_LC171,4 igm_Ctrl_LC171,2 igm_Ctrl_LC171,4 lc174 igg_Ctrl_LC174,2 igg_Ctrl_LC174,4 igm_Ctrl_LC174,2 igm_Ctrl_LC174,4 lc175 igg_Ctrl_LC175,2 igg_Ctrl_LC175,4 igm_Ctrl_LC175,2 igm_Ctrl_LC175,4 lc177 igg_Ctrl_LC177,2 igg_Ctrl_LC177,4 igm_Ctrl_LC177,2 igm_Ctrl_LC177,4 lc180 igg_Ctrl_LC180,2 igg_Ctrl_LC180,4 igm_Ctrl_LC180,2 igm_Ctrl_LC180,4 lc181 igg_Ctrl_LC181,2 igg_Ctrl_LC181,4 igm_Ctrl_LC181,2 igm_Ctrl_LC181,4 lc182 igg_Ctrl_LC182,2 igg_Ctrl_LC182,4 igm_Ctrl_LC182,2 igm_Ctrl_LC182,4 lc521925 strainCons119way,1565 lc522972 strainCons119way,1562 lc522973 strainCons119way,1567 lc522974 strainCons119way,1568 lc522975 strainCons119way,1569 lc528232v1 strainCons119way,1554 lc528233v1 strainCons119way,1555 ld2bd kimMgiLdr3p,2 kimNpLdr3pBreak,2 le vaccines,566 lead abEscape,24 bloomEscMabAvg,28 bloomEscMax,34 bloomEscSerumAvg,29 bloomEscTop,32 escape,9 escape,31 mccoy,24 nextstrainParsimony,119 rappuoli,9 rappuoli,31 leader kimTranscripts,72 kimTranscripts,162 kimTranscripts,207 kimTranscripts,327 transcriptome,64 transcriptome,183 leader-to-body kimMgiLdr3p,5 kimNpLdr3pBreak,5 leading spikeMuts,372 learning potPathoIndel,143 least Q0_tracks,741 Q1_tracks,743 Q2_tracks,743 Q3_tracks,743 galaxyEna,743 galaxyEnaQ0Ba-1,739 galaxyEnaQ0Ba-1-1,739 galaxyEnaQ0Ba-1-1-11,739 galaxyEnaQ0Ba-1-17,739 galaxyEnaQ0Ba-2,739 galaxyEnaQ1Ay-4,739 galaxyEnaQ1Ay-4-2,739 galaxyEnaQ1Ay-4-2-2,739 galaxyEnaQ1Ay-43,739 galaxyEnaQ1Ba-1-17,739 galaxyEnaQ2Ay-120,739 galaxyEnaQ2Ay-122,739 galaxyEnaQ2Ay-4,739 galaxyEnaQ2Ay-5,739 galaxyEnaQ2Ay-6,739 galaxyEnaQ3Ay-4,739 galaxyEnaQ3Ay-5,739 galaxyEnaQ3Ay-9,739 galaxyEnaQ3B-1-1-7,739 galaxyEnaQ3B-1-617-2,739 microdel,43 microdel,51 microdel,59 nextstrainSamples,248 nextstrainSamples,793 pdb,41 pdb,124 problematicSites,226 resistPred,133 sarsCov2Phylo,51 sarsCov2PhyloPub,65 variantMuts,882 variantMuts,928 leaves nextstrainParsimony,127 nextstrainParsimony,141 nextstrainParsimony,148 nextstrainParsimony,177 nextstrainParsimony,184 nextstrainParsimony,227 leaving microdel,97 led problematicSites,35 lee kimIvtCov,175 kimTranscripts,462 transcriptome,468 treangen,308 unipCov2AliSwissprot,414 unipCov2Chain,644 unipCov2DisulfBond,640 unipCov2Domain,639 unipCov2Interest,297 unipCov2LocCytopl,639 unipCov2LocExtra,639 unipCov2LocSignal,640 unipCov2LocTransMemb,640 unipCov2Modif,643 unipCov2Mut,640 unipCov2Other,640 unipCov2Repeat,638 unipCov2Struct,642 left nextstrainSamples,470 sarsCov2Phylo,90 sarsCov2Phylo,500 sarsCov2Phylo,554 sarsCov2PhyloPub,103 sarsCov2PhyloPub,529 sarsCov2PhyloPub,579 lei icshape,181 leiping cas13Crispr,501 lemey pond,270 length PhyloCSF_smooth,171 PhyloCSF_smooth,186 PhyloCSF_smooth,197 PhyloCSF_smooth,210 PhyloCSF_smooth,233 PhyloCSF_smooth,263 PhyloCSFpower,5 PhyloCSFpower,186 PhyloCSFpower,201 PhyloCSFpower,212 PhyloCSFpower,225 PhyloCSFpower,248 PhyloCSFpower,278 abEscape,284 augustusGene,82 bloomEscMabAvg,288 bloomEscMax,294 bloomEscSerumAvg,289 bloomEscTop,292 cpgIslandExt,268 cpgIslandExt,360 cpgIslandExt,395 cpgIslandExtUnmasked,271 cpgIslandExtUnmasked,363 cpgIslandExtUnmasked,398 cpgIslandSuper,268 cpgIslandSuper,360 cpgIslandSuper,395 escape,291 genscan,39 mccoy,284 pdb,45 pyle,150 rappuoli,291 lengths multiz7way,351 recomb,168 rosettaMhc,248 strainCons119way,693 strainCons119way,1689 strainCons119way,1885 strainCons44way,641 strainCons44way,1284 strainCons44way,1480 leo treangen,299 less PhyloCSF_smooth,173 PhyloCSF_smooth,235 PhyloCSF_smooth,270 PhyloCSF_smooth,276 PhyloCSF_smooth,289 PhyloCSFpower,188 PhyloCSFpower,250 PhyloCSFpower,285 PhyloCSFpower,291 PhyloCSFpower,304 kimTranscripts,214 potPathoIndel,46 strainCons119way,231 strainCons44way,179 variantMuts,938 variantMuts,1072 letter nextstrainClade,63 level Q0_tracks,485 Q1_tracks,487 Q2_tracks,487 Q3_tracks,487 abEscape,369 bloomEscMabAvg,373 bloomEscMax,379 bloomEscSerumAvg,374 bloomEscTop,377 escape,376 galaxyEna,487 galaxyEnaQ0Ba-1,6 galaxyEnaQ0Ba-1,483 galaxyEnaQ0Ba-1-1,6 galaxyEnaQ0Ba-1-1,483 galaxyEnaQ0Ba-1-1-11,6 galaxyEnaQ0Ba-1-1-11,483 galaxyEnaQ0Ba-1-17,6 galaxyEnaQ0Ba-1-17,483 galaxyEnaQ0Ba-2,6 galaxyEnaQ0Ba-2,483 galaxyEnaQ1Ay-4,6 galaxyEnaQ1Ay-4,483 galaxyEnaQ1Ay-4-2,6 galaxyEnaQ1Ay-4-2,483 galaxyEnaQ1Ay-4-2-2,6 galaxyEnaQ1Ay-4-2-2,483 galaxyEnaQ1Ay-43,6 galaxyEnaQ1Ay-43,483 galaxyEnaQ1Ba-1-17,6 galaxyEnaQ1Ba-1-17,483 galaxyEnaQ2Ay-120,6 galaxyEnaQ2Ay-120,483 galaxyEnaQ2Ay-122,6 galaxyEnaQ2Ay-122,483 galaxyEnaQ2Ay-4,6 galaxyEnaQ2Ay-4,483 galaxyEnaQ2Ay-5,6 galaxyEnaQ2Ay-5,483 galaxyEnaQ2Ay-6,6 galaxyEnaQ2Ay-6,483 galaxyEnaQ3Ay-4,6 galaxyEnaQ3Ay-4,483 galaxyEnaQ3Ay-5,6 galaxyEnaQ3Ay-5,483 galaxyEnaQ3Ay-9,6 galaxyEnaQ3Ay-9,483 galaxyEnaQ3B-1-1-7,6 galaxyEnaQ3B-1-1-7,483 galaxyEnaQ3B-1-617-2,6 galaxyEnaQ3B-1-617-2,483 kimRnaMod,68 mccoy,369 multiz7way,324 rappuoli,376 rnaStructRangan,71 strainCons119way,667 strainCons44way,615 variantMuts,180 levels IgG_Z-score-_COVID-19_patients,119 IgM_Z-score-_COVID-19_patients,119 bpmIggCovidSum,128 bpmIgmCovidSum,128 cd8escape,59 cpgIslandExt,158 cpgIslandExtUnmasked,161 cpgIslandSuper,158 microdel,33 multiz7way,146 pbm,128 pbmShanghai,185 problematicSites,127 rapid,143 strainCons119way,495 strainCons119way,1905 strainCons44way,443 strainCons44way,1500 leverages recomb,237 rosettaMhc,58 swift,28 lf cd8escape,196 li IgG_Z-score-_COVID-19_patients,423 IgM_Z-score-_COVID-19_patients,423 PhyloCSFpower,722 abEscape,837 bloomEscMabAvg,841 bloomEscMax,847 bloomEscSerumAvg,842 bloomEscTop,845 bpmIggCovidSum,432 bpmIgmCovidSum,432 escape,844 icshape,184 mccoy,837 pbm,432 pbmShanghai,12 pbmShanghai,494 rappuoli,844 variantMuts,1447 liang IgG_Z-score-_COVID-19_patients,411 IgM_Z-score-_COVID-19_patients,411 bpmIggCovidSum,420 bpmIgmCovidSum,420 pbm,420 lib vaccines,349 libraries Calu3_07hpi,124 Calu3_07hpi,133 Calu3_07hpi,239 ORFs,122 ORFs,131 ORFs,237 Vero6_05hpi,124 Vero6_05hpi,133 Vero6_05hpi,239 Vero6_24hpi,124 Vero6_24hpi,133 Vero6_24hpi,239 contacts,157 weizmanOrfs,130 weizmanOrfs,139 weizmanOrfs,245 library Calu3_07hpi,167 ORFs,165 Q0_tracks,103 Q0_tracks,164 Q1_tracks,105 Q1_tracks,166 Q2_tracks,105 Q2_tracks,166 Q3_tracks,105 Q3_tracks,166 Vero6_05hpi,167 Vero6_24hpi,167 galaxyEna,105 galaxyEna,166 galaxyEnaQ0Ba-1,101 galaxyEnaQ0Ba-1,162 galaxyEnaQ0Ba-1-1,101 galaxyEnaQ0Ba-1-1,162 galaxyEnaQ0Ba-1-1-11,101 galaxyEnaQ0Ba-1-1-11,162 galaxyEnaQ0Ba-1-17,101 galaxyEnaQ0Ba-1-17,162 galaxyEnaQ0Ba-2,101 galaxyEnaQ0Ba-2,162 galaxyEnaQ1Ay-4,101 galaxyEnaQ1Ay-4,162 galaxyEnaQ1Ay-4-2,101 galaxyEnaQ1Ay-4-2,162 galaxyEnaQ1Ay-4-2-2,101 galaxyEnaQ1Ay-4-2-2,162 galaxyEnaQ1Ay-43,101 galaxyEnaQ1Ay-43,162 galaxyEnaQ1Ba-1-17,101 galaxyEnaQ1Ba-1-17,162 galaxyEnaQ2Ay-120,101 galaxyEnaQ2Ay-120,162 galaxyEnaQ2Ay-122,101 galaxyEnaQ2Ay-122,162 galaxyEnaQ2Ay-4,101 galaxyEnaQ2Ay-4,162 galaxyEnaQ2Ay-5,101 galaxyEnaQ2Ay-5,162 galaxyEnaQ2Ay-6,101 galaxyEnaQ2Ay-6,162 galaxyEnaQ3Ay-4,101 galaxyEnaQ3Ay-4,162 galaxyEnaQ3Ay-5,101 galaxyEnaQ3Ay-5,162 galaxyEnaQ3Ay-9,101 galaxyEnaQ3Ay-9,162 galaxyEnaQ3B-1-1-7,101 galaxyEnaQ3B-1-1-7,162 galaxyEnaQ3B-1-617-2,101 galaxyEnaQ3B-1-617-2,162 swift,34 targets,122 targets,129 weizmanOrfs,173 licastro abEscape,865 bloomEscMabAvg,869 bloomEscMax,875 bloomEscSerumAvg,870 bloomEscTop,873 escape,872 mccoy,865 rappuoli,872 licensed abEscape,141 bloomEscMabAvg,145 bloomEscMax,151 bloomEscSerumAvg,146 bloomEscTop,149 escape,148 mccoy,141 rappuoli,148 liebig rfam,138 lift unipCov2AliSwissprot,48 lifted unipCov2AliSwissprot,173 unipCov2Chain,426 unipCov2DisulfBond,422 unipCov2Domain,421 unipCov2Interest,102 unipCov2LocCytopl,421 unipCov2LocExtra,421 unipCov2LocSignal,422 unipCov2LocTransMemb,422 unipCov2Modif,425 unipCov2Mut,422 unipCov2Other,422 unipCov2Repeat,420 unipCov2Struct,424 ligand contacts,2 rosettaMhc,208 rosettaMhc,266 ligands contacts,25 contacts,105 light cpgIslandExt,9 cpgIslandExtUnmasked,12 cpgIslandSuper,9 rnaStructRangan,59 unipCov2Chain,317 unipCov2Chain,401 unipCov2DisulfBond,313 unipCov2DisulfBond,397 unipCov2Domain,312 unipCov2Domain,396 unipCov2LocCytopl,312 unipCov2LocCytopl,396 unipCov2LocExtra,312 unipCov2LocExtra,396 unipCov2LocSignal,313 unipCov2LocSignal,397 unipCov2LocTransMemb,313 unipCov2LocTransMemb,397 unipCov2Modif,316 unipCov2Modif,400 unipCov2Mut,313 unipCov2Mut,397 unipCov2Other,313 unipCov2Other,397 unipCov2Repeat,311 unipCov2Repeat,395 unipCov2Struct,315 unipCov2Struct,399 lighter Q0_tracks,470 Q1_tracks,472 Q2_tracks,472 Q3_tracks,472 galaxyEna,472 galaxyEnaQ0Ba-1,468 galaxyEnaQ0Ba-1-1,468 galaxyEnaQ0Ba-1-1-11,468 galaxyEnaQ0Ba-1-17,468 galaxyEnaQ0Ba-2,468 galaxyEnaQ1Ay-4,468 galaxyEnaQ1Ay-4-2,468 galaxyEnaQ1Ay-4-2-2,468 galaxyEnaQ1Ay-43,468 galaxyEnaQ1Ba-1-17,468 galaxyEnaQ2Ay-120,468 galaxyEnaQ2Ay-122,468 galaxyEnaQ2Ay-4,468 galaxyEnaQ2Ay-5,468 galaxyEnaQ2Ay-6,468 galaxyEnaQ3Ay-4,468 galaxyEnaQ3Ay-5,468 galaxyEnaQ3Ay-9,468 galaxyEnaQ3B-1-1-7,468 galaxyEnaQ3B-1-617-2,468 like IgG_Z-score-_COVID-19_patients,268 IgM_Z-score-_COVID-19_patients,268 Q0_tracks,1210 Q1_tracks,1212 Q2_tracks,1212 Q3_tracks,1212 bpmIggCovidSum,277 bpmIgmCovidSum,277 galaxyEna,1212 galaxyEnaQ0Ba-1,1208 galaxyEnaQ0Ba-1-1,1208 galaxyEnaQ0Ba-1-1-11,1208 galaxyEnaQ0Ba-1-17,1208 galaxyEnaQ0Ba-2,1208 galaxyEnaQ1Ay-4,1208 galaxyEnaQ1Ay-4-2,1208 galaxyEnaQ1Ay-4-2-2,1208 galaxyEnaQ1Ay-43,1208 galaxyEnaQ1Ba-1-17,1208 galaxyEnaQ2Ay-120,1208 galaxyEnaQ2Ay-122,1208 galaxyEnaQ2Ay-4,1208 galaxyEnaQ2Ay-5,1208 galaxyEnaQ2Ay-6,1208 galaxyEnaQ3Ay-4,1208 galaxyEnaQ3Ay-5,1208 galaxyEnaQ3Ay-9,1208 galaxyEnaQ3B-1-1-7,1208 galaxyEnaQ3B-1-617-2,1208 icshape,143 kimTranscripts,102 nextstrainFreq,232 pbm,277 pbmShanghai,394 transcriptome,94 unipCov2AliSwissprot,241 unipCov2Chain,471 unipCov2DisulfBond,467 unipCov2Domain,466 unipCov2Interest,147 unipCov2LocCytopl,466 unipCov2LocExtra,466 unipCov2LocSignal,467 unipCov2LocTransMemb,467 unipCov2Modif,470 unipCov2Mut,467 unipCov2Other,467 unipCov2Repeat,465 unipCov2Struct,469 likelihood strainCons119way,2044 strainCons44way,1639 likely PhyloCSF_smooth,156 PhyloCSFpower,171 augustusGene,111 pond,287 problematicSites,422 problematicSites,424 strainCons119way,2088 strainCons44way,1683 lili icshape,199 limit variantMuts,824 limited nextstrainSamples,239 limits IgG_Z-score-_COVID-19_patients,261 IgM_Z-score-_COVID-19_patients,261 bpmIggCovidSum,270 bpmIgmCovidSum,270 pbm,270 lin PhyloCSF_smooth,703 PhyloCSFpower,672 cas13Crispr,478 cas13Crispr,498 phyloGenes,493 phyloGenes,521 line IgG_Z-score-_COVID-19_patients,217 IgM_Z-score-_COVID-19_patients,217 bpmIggCovidSum,226 bpmIgmCovidSum,226 gap,105 gold,124 multiz7way,348 nextstrainSamples,310 pbm,226 pbmShanghai,373 sarsCov2Phylo,315 sarsCov2PhyloPub,322 strainCons119way,690 strainCons44way,638 vaccines,405 lineage Q0_tracks,224 Q0_tracks,440 Q0_tracks,448 Q0_tracks,578 Q0_tracks,629 Q0_tracks,692 Q0_tracks,710 Q0_tracks,723 Q0_tracks,750 Q0_tracks,1033 Q1_tracks,226 Q1_tracks,442 Q1_tracks,450 Q1_tracks,580 Q1_tracks,631 Q1_tracks,694 Q1_tracks,712 Q1_tracks,725 Q1_tracks,752 Q1_tracks,1035 Q2_tracks,226 Q2_tracks,442 Q2_tracks,450 Q2_tracks,580 Q2_tracks,631 Q2_tracks,694 Q2_tracks,712 Q2_tracks,725 Q2_tracks,752 Q2_tracks,1035 Q3_tracks,226 Q3_tracks,442 Q3_tracks,450 Q3_tracks,580 Q3_tracks,631 Q3_tracks,694 Q3_tracks,712 Q3_tracks,725 Q3_tracks,752 Q3_tracks,1035 galaxyEna,226 galaxyEna,442 galaxyEna,450 galaxyEna,580 galaxyEna,631 galaxyEna,694 galaxyEna,712 galaxyEna,725 galaxyEna,752 galaxyEna,1035 galaxyEnaQ0Ba-1,222 galaxyEnaQ0Ba-1,438 galaxyEnaQ0Ba-1,446 galaxyEnaQ0Ba-1,576 galaxyEnaQ0Ba-1,627 galaxyEnaQ0Ba-1,690 galaxyEnaQ0Ba-1,708 galaxyEnaQ0Ba-1,721 galaxyEnaQ0Ba-1,748 galaxyEnaQ0Ba-1,1031 galaxyEnaQ0Ba-1-1,222 galaxyEnaQ0Ba-1-1,438 galaxyEnaQ0Ba-1-1,446 galaxyEnaQ0Ba-1-1,576 galaxyEnaQ0Ba-1-1,627 galaxyEnaQ0Ba-1-1,690 galaxyEnaQ0Ba-1-1,708 galaxyEnaQ0Ba-1-1,721 galaxyEnaQ0Ba-1-1,748 galaxyEnaQ0Ba-1-1,1031 galaxyEnaQ0Ba-1-1-11,222 galaxyEnaQ0Ba-1-1-11,438 galaxyEnaQ0Ba-1-1-11,446 galaxyEnaQ0Ba-1-1-11,576 galaxyEnaQ0Ba-1-1-11,627 galaxyEnaQ0Ba-1-1-11,690 galaxyEnaQ0Ba-1-1-11,708 galaxyEnaQ0Ba-1-1-11,721 galaxyEnaQ0Ba-1-1-11,748 galaxyEnaQ0Ba-1-1-11,1031 galaxyEnaQ0Ba-1-17,222 galaxyEnaQ0Ba-1-17,438 galaxyEnaQ0Ba-1-17,446 galaxyEnaQ0Ba-1-17,576 galaxyEnaQ0Ba-1-17,627 galaxyEnaQ0Ba-1-17,690 galaxyEnaQ0Ba-1-17,708 galaxyEnaQ0Ba-1-17,721 galaxyEnaQ0Ba-1-17,748 galaxyEnaQ0Ba-1-17,1031 galaxyEnaQ0Ba-2,222 galaxyEnaQ0Ba-2,438 galaxyEnaQ0Ba-2,446 galaxyEnaQ0Ba-2,576 galaxyEnaQ0Ba-2,627 galaxyEnaQ0Ba-2,690 galaxyEnaQ0Ba-2,708 galaxyEnaQ0Ba-2,721 galaxyEnaQ0Ba-2,748 galaxyEnaQ0Ba-2,1031 galaxyEnaQ1Ay-4,222 galaxyEnaQ1Ay-4,438 galaxyEnaQ1Ay-4,446 galaxyEnaQ1Ay-4,576 galaxyEnaQ1Ay-4,627 galaxyEnaQ1Ay-4,690 galaxyEnaQ1Ay-4,708 galaxyEnaQ1Ay-4,721 galaxyEnaQ1Ay-4,748 galaxyEnaQ1Ay-4,1031 galaxyEnaQ1Ay-4-2,222 galaxyEnaQ1Ay-4-2,438 galaxyEnaQ1Ay-4-2,446 galaxyEnaQ1Ay-4-2,576 galaxyEnaQ1Ay-4-2,627 galaxyEnaQ1Ay-4-2,690 galaxyEnaQ1Ay-4-2,708 galaxyEnaQ1Ay-4-2,721 galaxyEnaQ1Ay-4-2,748 galaxyEnaQ1Ay-4-2,1031 galaxyEnaQ1Ay-4-2-2,222 galaxyEnaQ1Ay-4-2-2,438 galaxyEnaQ1Ay-4-2-2,446 galaxyEnaQ1Ay-4-2-2,576 galaxyEnaQ1Ay-4-2-2,627 galaxyEnaQ1Ay-4-2-2,690 galaxyEnaQ1Ay-4-2-2,708 galaxyEnaQ1Ay-4-2-2,721 galaxyEnaQ1Ay-4-2-2,748 galaxyEnaQ1Ay-4-2-2,1031 galaxyEnaQ1Ay-43,222 galaxyEnaQ1Ay-43,438 galaxyEnaQ1Ay-43,446 galaxyEnaQ1Ay-43,576 galaxyEnaQ1Ay-43,627 galaxyEnaQ1Ay-43,690 galaxyEnaQ1Ay-43,708 galaxyEnaQ1Ay-43,721 galaxyEnaQ1Ay-43,748 galaxyEnaQ1Ay-43,1031 galaxyEnaQ1Ba-1-17,222 galaxyEnaQ1Ba-1-17,438 galaxyEnaQ1Ba-1-17,446 galaxyEnaQ1Ba-1-17,576 galaxyEnaQ1Ba-1-17,627 galaxyEnaQ1Ba-1-17,690 galaxyEnaQ1Ba-1-17,708 galaxyEnaQ1Ba-1-17,721 galaxyEnaQ1Ba-1-17,748 galaxyEnaQ1Ba-1-17,1031 galaxyEnaQ2Ay-120,222 galaxyEnaQ2Ay-120,438 galaxyEnaQ2Ay-120,446 galaxyEnaQ2Ay-120,576 galaxyEnaQ2Ay-120,627 galaxyEnaQ2Ay-120,690 galaxyEnaQ2Ay-120,708 galaxyEnaQ2Ay-120,721 galaxyEnaQ2Ay-120,748 galaxyEnaQ2Ay-120,1031 galaxyEnaQ2Ay-122,222 galaxyEnaQ2Ay-122,438 galaxyEnaQ2Ay-122,446 galaxyEnaQ2Ay-122,576 galaxyEnaQ2Ay-122,627 galaxyEnaQ2Ay-122,690 galaxyEnaQ2Ay-122,708 galaxyEnaQ2Ay-122,721 galaxyEnaQ2Ay-122,748 galaxyEnaQ2Ay-122,1031 galaxyEnaQ2Ay-4,222 galaxyEnaQ2Ay-4,438 galaxyEnaQ2Ay-4,446 galaxyEnaQ2Ay-4,576 galaxyEnaQ2Ay-4,627 galaxyEnaQ2Ay-4,690 galaxyEnaQ2Ay-4,708 galaxyEnaQ2Ay-4,721 galaxyEnaQ2Ay-4,748 galaxyEnaQ2Ay-4,1031 galaxyEnaQ2Ay-5,222 galaxyEnaQ2Ay-5,438 galaxyEnaQ2Ay-5,446 galaxyEnaQ2Ay-5,576 galaxyEnaQ2Ay-5,627 galaxyEnaQ2Ay-5,690 galaxyEnaQ2Ay-5,708 galaxyEnaQ2Ay-5,721 galaxyEnaQ2Ay-5,748 galaxyEnaQ2Ay-5,1031 galaxyEnaQ2Ay-6,222 galaxyEnaQ2Ay-6,438 galaxyEnaQ2Ay-6,446 galaxyEnaQ2Ay-6,576 galaxyEnaQ2Ay-6,627 galaxyEnaQ2Ay-6,690 galaxyEnaQ2Ay-6,708 galaxyEnaQ2Ay-6,721 galaxyEnaQ2Ay-6,748 galaxyEnaQ2Ay-6,1031 galaxyEnaQ3Ay-4,222 galaxyEnaQ3Ay-4,438 galaxyEnaQ3Ay-4,446 galaxyEnaQ3Ay-4,576 galaxyEnaQ3Ay-4,627 galaxyEnaQ3Ay-4,690 galaxyEnaQ3Ay-4,708 galaxyEnaQ3Ay-4,721 galaxyEnaQ3Ay-4,748 galaxyEnaQ3Ay-4,1031 galaxyEnaQ3Ay-5,222 galaxyEnaQ3Ay-5,438 galaxyEnaQ3Ay-5,446 galaxyEnaQ3Ay-5,576 galaxyEnaQ3Ay-5,627 galaxyEnaQ3Ay-5,690 galaxyEnaQ3Ay-5,708 galaxyEnaQ3Ay-5,721 galaxyEnaQ3Ay-5,748 galaxyEnaQ3Ay-5,1031 galaxyEnaQ3Ay-9,222 galaxyEnaQ3Ay-9,438 galaxyEnaQ3Ay-9,446 galaxyEnaQ3Ay-9,576 galaxyEnaQ3Ay-9,627 galaxyEnaQ3Ay-9,690 galaxyEnaQ3Ay-9,708 galaxyEnaQ3Ay-9,721 galaxyEnaQ3Ay-9,748 galaxyEnaQ3Ay-9,1031 galaxyEnaQ3B-1-1-7,222 galaxyEnaQ3B-1-1-7,438 galaxyEnaQ3B-1-1-7,446 galaxyEnaQ3B-1-1-7,576 galaxyEnaQ3B-1-1-7,627 galaxyEnaQ3B-1-1-7,690 galaxyEnaQ3B-1-1-7,708 galaxyEnaQ3B-1-1-7,721 galaxyEnaQ3B-1-1-7,748 galaxyEnaQ3B-1-1-7,1031 galaxyEnaQ3B-1-617-2,222 galaxyEnaQ3B-1-617-2,438 galaxyEnaQ3B-1-617-2,446 galaxyEnaQ3B-1-617-2,576 galaxyEnaQ3B-1-617-2,627 galaxyEnaQ3B-1-617-2,690 galaxyEnaQ3B-1-617-2,708 galaxyEnaQ3B-1-617-2,721 galaxyEnaQ3B-1-617-2,748 galaxyEnaQ3B-1-617-2,1031 pond,284 recomb,243 sarsCov2Phylo,131 sarsCov2Phylo,205 sarsCov2Phylo,233 sarsCov2PhyloPub,142 sarsCov2PhyloPub,176 sarsCov2PhyloPub,212 sarsCov2PhyloPub,240 sarsCov2PhyloPub,382 strainCons119way,2029 strainCons44way,1624 variantMuts,249 variantMuts,793 variantMuts,800 variantMuts,1308 variantMuts,1350 variantMuts,1385 variantMuts,1424 lineagenextstrain variantMuts,256 lineages Q0_tracks,6 Q0_tracks,11 Q0_tracks,373 Q0_tracks,393 Q0_tracks,403 Q0_tracks,636 Q0_tracks,1068 Q0_tracks,1094 Q1_tracks,6 Q1_tracks,12 Q1_tracks,375 Q1_tracks,395 Q1_tracks,405 Q1_tracks,638 Q1_tracks,1070 Q1_tracks,1096 Q2_tracks,6 Q2_tracks,12 Q2_tracks,375 Q2_tracks,395 Q2_tracks,405 Q2_tracks,638 Q2_tracks,1070 Q2_tracks,1096 Q3_tracks,6 Q3_tracks,12 Q3_tracks,375 Q3_tracks,395 Q3_tracks,405 Q3_tracks,638 Q3_tracks,1070 Q3_tracks,1096 galaxyEna,375 galaxyEna,395 galaxyEna,405 galaxyEna,638 galaxyEna,1070 galaxyEna,1096 galaxyEnaQ0Ba-1,371 galaxyEnaQ0Ba-1,391 galaxyEnaQ0Ba-1,401 galaxyEnaQ0Ba-1,634 galaxyEnaQ0Ba-1,1066 galaxyEnaQ0Ba-1,1092 galaxyEnaQ0Ba-1-1,371 galaxyEnaQ0Ba-1-1,391 galaxyEnaQ0Ba-1-1,401 galaxyEnaQ0Ba-1-1,634 galaxyEnaQ0Ba-1-1,1066 galaxyEnaQ0Ba-1-1,1092 galaxyEnaQ0Ba-1-1-11,371 galaxyEnaQ0Ba-1-1-11,391 galaxyEnaQ0Ba-1-1-11,401 galaxyEnaQ0Ba-1-1-11,634 galaxyEnaQ0Ba-1-1-11,1066 galaxyEnaQ0Ba-1-1-11,1092 galaxyEnaQ0Ba-1-17,371 galaxyEnaQ0Ba-1-17,391 galaxyEnaQ0Ba-1-17,401 galaxyEnaQ0Ba-1-17,634 galaxyEnaQ0Ba-1-17,1066 galaxyEnaQ0Ba-1-17,1092 galaxyEnaQ0Ba-2,371 galaxyEnaQ0Ba-2,391 galaxyEnaQ0Ba-2,401 galaxyEnaQ0Ba-2,634 galaxyEnaQ0Ba-2,1066 galaxyEnaQ0Ba-2,1092 galaxyEnaQ1Ay-4,371 galaxyEnaQ1Ay-4,391 galaxyEnaQ1Ay-4,401 galaxyEnaQ1Ay-4,634 galaxyEnaQ1Ay-4,1066 galaxyEnaQ1Ay-4,1092 galaxyEnaQ1Ay-4-2,371 galaxyEnaQ1Ay-4-2,391 galaxyEnaQ1Ay-4-2,401 galaxyEnaQ1Ay-4-2,634 galaxyEnaQ1Ay-4-2,1066 galaxyEnaQ1Ay-4-2,1092 galaxyEnaQ1Ay-4-2-2,371 galaxyEnaQ1Ay-4-2-2,391 galaxyEnaQ1Ay-4-2-2,401 galaxyEnaQ1Ay-4-2-2,634 galaxyEnaQ1Ay-4-2-2,1066 galaxyEnaQ1Ay-4-2-2,1092 galaxyEnaQ1Ay-43,371 galaxyEnaQ1Ay-43,391 galaxyEnaQ1Ay-43,401 galaxyEnaQ1Ay-43,634 galaxyEnaQ1Ay-43,1066 galaxyEnaQ1Ay-43,1092 galaxyEnaQ1Ba-1-17,371 galaxyEnaQ1Ba-1-17,391 galaxyEnaQ1Ba-1-17,401 galaxyEnaQ1Ba-1-17,634 galaxyEnaQ1Ba-1-17,1066 galaxyEnaQ1Ba-1-17,1092 galaxyEnaQ2Ay-120,371 galaxyEnaQ2Ay-120,391 galaxyEnaQ2Ay-120,401 galaxyEnaQ2Ay-120,634 galaxyEnaQ2Ay-120,1066 galaxyEnaQ2Ay-120,1092 galaxyEnaQ2Ay-122,371 galaxyEnaQ2Ay-122,391 galaxyEnaQ2Ay-122,401 galaxyEnaQ2Ay-122,634 galaxyEnaQ2Ay-122,1066 galaxyEnaQ2Ay-122,1092 galaxyEnaQ2Ay-4,371 galaxyEnaQ2Ay-4,391 galaxyEnaQ2Ay-4,401 galaxyEnaQ2Ay-4,634 galaxyEnaQ2Ay-4,1066 galaxyEnaQ2Ay-4,1092 galaxyEnaQ2Ay-5,371 galaxyEnaQ2Ay-5,391 galaxyEnaQ2Ay-5,401 galaxyEnaQ2Ay-5,634 galaxyEnaQ2Ay-5,1066 galaxyEnaQ2Ay-5,1092 galaxyEnaQ2Ay-6,371 galaxyEnaQ2Ay-6,391 galaxyEnaQ2Ay-6,401 galaxyEnaQ2Ay-6,634 galaxyEnaQ2Ay-6,1066 galaxyEnaQ2Ay-6,1092 galaxyEnaQ3Ay-4,371 galaxyEnaQ3Ay-4,391 galaxyEnaQ3Ay-4,401 galaxyEnaQ3Ay-4,634 galaxyEnaQ3Ay-4,1066 galaxyEnaQ3Ay-4,1092 galaxyEnaQ3Ay-5,371 galaxyEnaQ3Ay-5,391 galaxyEnaQ3Ay-5,401 galaxyEnaQ3Ay-5,634 galaxyEnaQ3Ay-5,1066 galaxyEnaQ3Ay-5,1092 galaxyEnaQ3Ay-9,371 galaxyEnaQ3Ay-9,391 galaxyEnaQ3Ay-9,401 galaxyEnaQ3Ay-9,634 galaxyEnaQ3Ay-9,1066 galaxyEnaQ3Ay-9,1092 galaxyEnaQ3B-1-1-7,371 galaxyEnaQ3B-1-1-7,391 galaxyEnaQ3B-1-1-7,401 galaxyEnaQ3B-1-1-7,634 galaxyEnaQ3B-1-1-7,1066 galaxyEnaQ3B-1-1-7,1092 galaxyEnaQ3B-1-617-2,371 galaxyEnaQ3B-1-617-2,391 galaxyEnaQ3B-1-617-2,401 galaxyEnaQ3B-1-617-2,634 galaxyEnaQ3B-1-617-2,1066 galaxyEnaQ3B-1-617-2,1092 problematicSites,433 recomb,124 sarsCov2Phylo,163 sarsCov2Phylo,958 sarsCov2PhyloPub,169 sarsCov2PhyloPub,1078 variantMuts,20 variantMuts,1031 variantMuts,1123 variantMuts,1133 variantMuts,1152 variantMuts,1265 lineagevariants variantMuts,1224 lineagevariants.py variantMuts,964 lineagevariants.sh variantMuts,971 linear pbmShanghai,516 lineargap multiz7way,673 strainCons119way,1022 strainCons44way,970 lines Calu3_07hpi,252 ORFs,250 Vero6_05hpi,252 Vero6_24hpi,252 contacts,68 publicAnnots,95 vaccines,146 weizmanOrfs,258 link Starr_Bloom,155 Starr_Bloom_bind,149 addgene,97 addgene,140 gc5BaseBw,63 iedb,78 kimNp,85 nextstrainFreq,339 rosettaMhc,150 spikeMuts,162 spikeMuts,170 unipCov2AliSwissprot,117 unipCov2Chain,302 unipCov2DisulfBond,298 unipCov2Domain,297 unipCov2LocCytopl,297 unipCov2LocExtra,297 unipCov2LocSignal,298 unipCov2LocTransMemb,298 unipCov2Modif,301 unipCov2Mut,298 unipCov2Other,298 unipCov2Repeat,296 unipCov2Struct,300 linkage nextstrainSamples,349 problematicSites,366 sarsCov2Phylo,353 sarsCov2PhyloPub,364 linked multiz7way,641 primers,121 primers,278 strainCons119way,990 strainCons44way,938 linking variantMuts,1356 links Q0_tracks,1021 Q1_tracks,1023 Q2_tracks,1023 Q3_tracks,1023 abEscape,259 addgene,68 bloomEscMabAvg,263 bloomEscMax,269 bloomEscSerumAvg,264 bloomEscTop,267 crisprDet,55 escape,266 galaxyEna,1023 galaxyEnaQ0Ba-1,1019 galaxyEnaQ0Ba-1-1,1019 galaxyEnaQ0Ba-1-1-11,1019 galaxyEnaQ0Ba-1-17,1019 galaxyEnaQ0Ba-2,1019 galaxyEnaQ1Ay-4,1019 galaxyEnaQ1Ay-4-2,1019 galaxyEnaQ1Ay-4-2-2,1019 galaxyEnaQ1Ay-43,1019 galaxyEnaQ1Ba-1-17,1019 galaxyEnaQ2Ay-120,1019 galaxyEnaQ2Ay-122,1019 galaxyEnaQ2Ay-4,1019 galaxyEnaQ2Ay-5,1019 galaxyEnaQ2Ay-6,1019 galaxyEnaQ3Ay-4,1019 galaxyEnaQ3Ay-5,1019 galaxyEnaQ3Ay-9,1019 galaxyEnaQ3B-1-1-7,1019 galaxyEnaQ3B-1-617-2,1019 mccoy,259 rappuoli,266 spikeMuts,174 variantMuts,85 linux nextstrainSamples,779 linux.x86_64 cpgIslandExt,579 cpgIslandExtUnmasked,582 cpgIslandSuper,579 lipid unipCov2Chain,205 unipCov2DisulfBond,201 unipCov2Domain,200 unipCov2LocCytopl,200 unipCov2LocExtra,200 unipCov2LocSignal,201 unipCov2LocTransMemb,201 unipCov2Modif,204 unipCov2Mut,201 unipCov2Other,201 unipCov2Repeat,199 unipCov2Struct,203 lipoification unipCov2Chain,386 unipCov2DisulfBond,382 unipCov2Domain,381 unipCov2LocCytopl,381 unipCov2LocExtra,381 unipCov2LocSignal,382 unipCov2LocTransMemb,382 unipCov2Modif,385 unipCov2Mut,382 unipCov2Other,382 unipCov2Repeat,380 unipCov2Struct,384 list Calu3_07hpi,333 IgG_Z-score-_COVID-19_patients,389 IgM_Z-score-_COVID-19_patients,389 ORFs,331 PhyloCSF_smooth,658 PhyloCSFrejected,9 Starr_Bloom,225 Starr_Bloom_bind,219 Vero6_05hpi,333 Vero6_24hpi,333 abEscape,677 artic,171 articV4,171 articV4_1,184 bloomEscMabAvg,681 bloomEscMax,687 bloomEscSerumAvg,682 bloomEscTop,685 bpmIggCovidSum,398 bpmIgmCovidSum,398 cas13Crispr,456 contacts,384 escape,684 icshape,168 kimRnaMod,218 kimTranscripts,436 mccoy,677 microdel,175 ncbiGeneBGP,151 ncbiProducts,167 nextstrainFreq,256 nextstrainSamples,157 pbm,398 pbmShanghai,481 phyloGenes,433 poranHla1,246 poranHla2,246 rapid,325 rappuoli,684 resist,128 resistPred,153 resistPred,220 spikeMuts,343 swift,254 transcriptome,442 treangen,110 unipCov2AliSwissprot,388 unipCov2Chain,618 unipCov2DisulfBond,614 unipCov2Domain,613 unipCov2LocCytopl,613 unipCov2LocExtra,613 unipCov2LocSignal,614 unipCov2LocTransMemb,614 unipCov2Modif,617 unipCov2Mut,614 unipCov2Other,614 unipCov2Repeat,612 unipCov2Struct,616 variantMuts,209 varskip,177 weizmanOrfs,339 listed abEscape,59 bloomEscMabAvg,63 bloomEscMax,69 bloomEscSerumAvg,64 bloomEscTop,67 contacts,180 escape,66 kimTranscripts,234 mccoy,59 rappuoli,66 resistPred,97 sarsCov2PhyloPub,1035 variantMuts,243 lists gordon2,189 resist,18 resistPred,26 literature iedb,90 rfam,102 little epitopes,200 liu abEscape,182 abEscape,625 abEscape,772 bloomEscMabAvg,186 bloomEscMabAvg,629 bloomEscMabAvg,776 bloomEscMax,192 bloomEscMax,635 bloomEscMax,782 bloomEscSerumAvg,187 bloomEscSerumAvg,630 bloomEscSerumAvg,777 bloomEscTop,190 bloomEscTop,633 bloomEscTop,780 cas13Crispr,496 escape,189 escape,632 escape,779 mccoy,182 mccoy,625 mccoy,772 rappuoli,189 rappuoli,632 rappuoli,779 treangen,297 live publicAnnots,39 lm unipCov2AliSwissprot,475 unipCov2Chain,704 unipCov2DisulfBond,700 unipCov2Domain,699 unipCov2Interest,358 unipCov2LocCytopl,699 unipCov2LocExtra,699 unipCov2LocSignal,700 unipCov2LocTransMemb,700 unipCov2Modif,703 unipCov2Mut,700 unipCov2Other,700 unipCov2Repeat,698 unipCov2Struct,702 loaded windowmaskerSdust,79 local PhyloCSF_smooth,204 PhyloCSFpower,7 PhyloCSFpower,219 pyle,321 localization potPathoIndel,56 locarna rfam,95 located simpleRepeat,21 location potPathoIndel,194 unipCov2Chain,363 unipCov2DisulfBond,359 unipCov2Domain,358 unipCov2LocCytopl,358 unipCov2LocExtra,358 unipCov2LocSignal,359 unipCov2LocTransMemb,359 unipCov2Modif,362 unipCov2Mut,359 unipCov2Other,359 unipCov2Repeat,357 unipCov2Struct,361 locations IgG_Z-score-_COVID-19_patients,81 IgM_Z-score-_COVID-19_patients,81 artic,33 articV4,36 articV4_1,47 bpmIggCovidSum,90 bpmIgmCovidSum,90 contacts,42 crisprDet,14 gap,3 kimIvtCov,132 kimNp,23 kimRnaMod,31 pbm,90 pbmShanghai,147 pdb,64 poranHla1,85 poranHla2,85 primers,16 problematicSites,88 problematicSites,116 problematicSites,167 rapid,160 rnaStructRangan,16 swift,97 swift,131 unipCov2AliSwissprot,77 unipCov2Chain,262 unipCov2DisulfBond,258 unipCov2Domain,257 unipCov2Interest,49 unipCov2LocCytopl,257 unipCov2LocExtra,257 unipCov2LocSignal,258 unipCov2LocTransMemb,258 unipCov2Modif,261 unipCov2Mut,258 unipCov2Other,258 unipCov2Repeat,256 unipCov2Struct,260 varskip,33 loci PhyloCSF_smooth,769 PhyloCSFpower,748 cas13Crispr,133 loes abEscape,692 abEscape,735 bloomEscMabAvg,696 bloomEscMabAvg,739 bloomEscMax,702 bloomEscMax,745 bloomEscSerumAvg,697 bloomEscSerumAvg,740 bloomEscTop,700 bloomEscTop,743 escape,699 escape,742 mccoy,692 mccoy,735 rappuoli,699 rappuoli,742 log pbmShanghai,225 strainCons119way,362 strainCons119way,2110 strainCons119way,2118 strainCons119way,2153 strainCons119way,2158 strainCons44way,310 strainCons44way,1705 strainCons44way,1713 strainCons44way,1748 strainCons44way,1753 log-likelihood PhyloCSF_smooth,482 PhyloCSFpower,497 log-odds PhyloCSF_smooth,592 PhyloCSFpower,607 strainCons119way,2105 strainCons119way,2133 strainCons44way,1700 strainCons44way,1728 loman variantMuts,1281 long recomb,134 recomb,152 recomb,179 sarsCov2Phylo,657 sarsCov2Phylo,1157 sarsCov2PhyloPub,681 sarsCov2PhyloPub,1290 strainCons119way,1757 strainCons119way,1947 strainCons44way,1352 strainCons44way,1542 varskipVsl1a,2 varskipVsl1a,6 long-read kimTranscripts,7 kimTranscripts,32 transcriptome,24 longest multiz7way,365 strainCons119way,707 strainCons44way,655 lonie Q0_tracks,1256 Q0_tracks,1328 Q1_tracks,1258 Q1_tracks,1330 Q2_tracks,1258 Q2_tracks,1330 Q3_tracks,1258 Q3_tracks,1330 galaxyEna,1258 galaxyEna,1330 galaxyEnaQ0Ba-1,1254 galaxyEnaQ0Ba-1,1326 galaxyEnaQ0Ba-1-1,1254 galaxyEnaQ0Ba-1-1,1326 galaxyEnaQ0Ba-1-1-11,1254 galaxyEnaQ0Ba-1-1-11,1326 galaxyEnaQ0Ba-1-17,1254 galaxyEnaQ0Ba-1-17,1326 galaxyEnaQ0Ba-2,1254 galaxyEnaQ0Ba-2,1326 galaxyEnaQ1Ay-4,1254 galaxyEnaQ1Ay-4,1326 galaxyEnaQ1Ay-4-2,1254 galaxyEnaQ1Ay-4-2,1326 galaxyEnaQ1Ay-4-2-2,1254 galaxyEnaQ1Ay-4-2-2,1326 galaxyEnaQ1Ay-43,1254 galaxyEnaQ1Ay-43,1326 galaxyEnaQ1Ba-1-17,1254 galaxyEnaQ1Ba-1-17,1326 galaxyEnaQ2Ay-120,1254 galaxyEnaQ2Ay-120,1326 galaxyEnaQ2Ay-122,1254 galaxyEnaQ2Ay-122,1326 galaxyEnaQ2Ay-4,1254 galaxyEnaQ2Ay-4,1326 galaxyEnaQ2Ay-5,1254 galaxyEnaQ2Ay-5,1326 galaxyEnaQ2Ay-6,1254 galaxyEnaQ2Ay-6,1326 galaxyEnaQ3Ay-4,1254 galaxyEnaQ3Ay-4,1326 galaxyEnaQ3Ay-5,1254 galaxyEnaQ3Ay-5,1326 galaxyEnaQ3Ay-9,1254 galaxyEnaQ3Ay-9,1326 galaxyEnaQ3B-1-1-7,1254 galaxyEnaQ3B-1-1-7,1326 galaxyEnaQ3B-1-617-2,1254 galaxyEnaQ3B-1-617-2,1326 look contacts,52 resistPred,91 loops rnaStructRangan,60 loose multiz7way,674 strainCons119way,1023 strainCons44way,971 loss Starr_Bloom,141 Starr_Bloom_bind,135 lost treangen,52 louis-marie abEscape,779 bloomEscMabAvg,783 bloomEscMax,789 bloomEscSerumAvg,784 bloomEscTop,787 escape,786 mccoy,779 rappuoli,786 low PhyloCSF_smooth,53 PhyloCSFpower,68 potPathoIndel,131 problematicSites,373 pyle,80 pyle,175 variantMuts,951 lower Q0_tracks,587 Q0_tracks,761 Q1_tracks,589 Q1_tracks,763 Q2_tracks,589 Q2_tracks,763 Q3_tracks,589 Q3_tracks,763 galaxyEna,589 galaxyEna,763 galaxyEnaQ0Ba-1,585 galaxyEnaQ0Ba-1,759 galaxyEnaQ0Ba-1-1,585 galaxyEnaQ0Ba-1-1,759 galaxyEnaQ0Ba-1-1-11,585 galaxyEnaQ0Ba-1-1-11,759 galaxyEnaQ0Ba-1-17,585 galaxyEnaQ0Ba-1-17,759 galaxyEnaQ0Ba-2,585 galaxyEnaQ0Ba-2,759 galaxyEnaQ1Ay-4,585 galaxyEnaQ1Ay-4,759 galaxyEnaQ1Ay-4-2,585 galaxyEnaQ1Ay-4-2,759 galaxyEnaQ1Ay-4-2-2,585 galaxyEnaQ1Ay-4-2-2,759 galaxyEnaQ1Ay-43,585 galaxyEnaQ1Ay-43,759 galaxyEnaQ1Ba-1-17,585 galaxyEnaQ1Ba-1-17,759 galaxyEnaQ2Ay-120,585 galaxyEnaQ2Ay-120,759 galaxyEnaQ2Ay-122,585 galaxyEnaQ2Ay-122,759 galaxyEnaQ2Ay-4,585 galaxyEnaQ2Ay-4,759 galaxyEnaQ2Ay-5,585 galaxyEnaQ2Ay-5,759 galaxyEnaQ2Ay-6,585 galaxyEnaQ2Ay-6,759 galaxyEnaQ3Ay-4,585 galaxyEnaQ3Ay-4,759 galaxyEnaQ3Ay-5,585 galaxyEnaQ3Ay-5,759 galaxyEnaQ3Ay-9,585 galaxyEnaQ3Ay-9,759 galaxyEnaQ3B-1-1-7,585 galaxyEnaQ3B-1-1-7,759 galaxyEnaQ3B-1-617-2,585 galaxyEnaQ3B-1-617-2,759 rapid,142 targets,107 variantMuts,179 lower-scoring multiz7way,687 rfam,65 strainCons119way,1036 strainCons44way,984 lr757995v1 strainCons119way,1570 lr757996v1 strainCons119way,1536 lr757997v1 strainCons119way,1594 lr757998v1 strainCons119way,1559 lrt strainCons119way,2052 strainCons44way,1647 ls-snp unipCov2AliSwissprot,213 unipCov2Chain,466 unipCov2DisulfBond,462 unipCov2Domain,461 unipCov2Interest,142 unipCov2LocCytopl,461 unipCov2LocExtra,461 unipCov2LocSignal,462 unipCov2LocTransMemb,462 unipCov2Modif,465 unipCov2Mut,462 unipCov2Other,462 unipCov2Repeat,460 unipCov2Struct,464 lt abEscape,885 abEscape,890 bloomEscMabAvg,889 bloomEscMabAvg,894 bloomEscMax,895 bloomEscMax,900 bloomEscSerumAvg,890 bloomEscSerumAvg,895 bloomEscTop,893 bloomEscTop,898 escape,892 escape,897 gordon2,165 mccoy,885 mccoy,890 nextstrainSamples,276 nextstrainSamples,287 nextstrainSamples,1054 pond,158 pyle,83 pyle,100 pyle,102 rappuoli,892 rappuoli,897 vaccines,264 vaccines,267 ltm Calu3_07hpi,145 LTM_24hr_1,2 LTM_24hr_1,6 LTM_24hr_2,2 LTM_24hr_2,6 LTM_5hr_1,2 LTM_5hr_1,6 LTM_5hr_2,2 LTM_5hr_2,6 LTM_7hr_1,2 LTM_7hr_1,6 LTM_7hr_2,2 LTM_7hr_2,6 ORFs,143 Vero6_05hpi,145 Vero6_24hpi,145 weizmanOrfs,151 lucaci pond,254 lucheng-19 strainCons119way,1460 lw multiz7way,1053 strainCons119way,2431 strainCons44way,2026 ly-cov016 LY-CoV016Max,2 LY-CoV016Max,9 LY-CoV016Total,2 LY-CoV016Total,9 lymphocytes cd8escape,20 lyra11 strainCons44way,1126 lytras pond,252 m PhyloCSF_smooth,708 PhyloCSF_smooth,743 PhyloCSF_smooth,786 PhyloCSFpower,678 PhyloCSFpower,709 PhyloCSFpower,731 PhyloCSFpower,762 Q0_tracks,1234 Q0_tracks,1304 Q0_tracks,1310 Q1_tracks,1236 Q1_tracks,1306 Q1_tracks,1312 Q2_tracks,1236 Q2_tracks,1306 Q2_tracks,1312 Q3_tracks,1236 Q3_tracks,1306 Q3_tracks,1312 abEscape,789 augustusGene,287 augustusGene,289 augustusGene,317 bloomEscMabAvg,793 bloomEscMax,799 bloomEscSerumAvg,794 bloomEscTop,797 cd8escape,109 cd8escape,190 cd8escape,198 cd8escape,207 cpgIslandExt,605 cpgIslandExt,607 cpgIslandExtUnmasked,608 cpgIslandExtUnmasked,610 cpgIslandSuper,605 cpgIslandSuper,607 escape,796 galaxyEna,1236 galaxyEna,1306 galaxyEna,1312 galaxyEnaQ0Ba-1,1232 galaxyEnaQ0Ba-1,1302 galaxyEnaQ0Ba-1,1308 galaxyEnaQ0Ba-1-1,1232 galaxyEnaQ0Ba-1-1,1302 galaxyEnaQ0Ba-1-1,1308 galaxyEnaQ0Ba-1-1-11,1232 galaxyEnaQ0Ba-1-1-11,1302 galaxyEnaQ0Ba-1-1-11,1308 galaxyEnaQ0Ba-1-17,1232 galaxyEnaQ0Ba-1-17,1302 galaxyEnaQ0Ba-1-17,1308 galaxyEnaQ0Ba-2,1232 galaxyEnaQ0Ba-2,1302 galaxyEnaQ0Ba-2,1308 galaxyEnaQ1Ay-4,1232 galaxyEnaQ1Ay-4,1302 galaxyEnaQ1Ay-4,1308 galaxyEnaQ1Ay-4-2,1232 galaxyEnaQ1Ay-4-2,1302 galaxyEnaQ1Ay-4-2,1308 galaxyEnaQ1Ay-4-2-2,1232 galaxyEnaQ1Ay-4-2-2,1302 galaxyEnaQ1Ay-4-2-2,1308 galaxyEnaQ1Ay-43,1232 galaxyEnaQ1Ay-43,1302 galaxyEnaQ1Ay-43,1308 galaxyEnaQ1Ba-1-17,1232 galaxyEnaQ1Ba-1-17,1302 galaxyEnaQ1Ba-1-17,1308 galaxyEnaQ2Ay-120,1232 galaxyEnaQ2Ay-120,1302 galaxyEnaQ2Ay-120,1308 galaxyEnaQ2Ay-122,1232 galaxyEnaQ2Ay-122,1302 galaxyEnaQ2Ay-122,1308 galaxyEnaQ2Ay-4,1232 galaxyEnaQ2Ay-4,1302 galaxyEnaQ2Ay-4,1308 galaxyEnaQ2Ay-5,1232 galaxyEnaQ2Ay-5,1302 galaxyEnaQ2Ay-5,1308 galaxyEnaQ2Ay-6,1232 galaxyEnaQ2Ay-6,1302 galaxyEnaQ2Ay-6,1308 galaxyEnaQ3Ay-4,1232 galaxyEnaQ3Ay-4,1302 galaxyEnaQ3Ay-4,1308 galaxyEnaQ3Ay-5,1232 galaxyEnaQ3Ay-5,1302 galaxyEnaQ3Ay-5,1308 galaxyEnaQ3Ay-9,1232 galaxyEnaQ3Ay-9,1302 galaxyEnaQ3Ay-9,1308 galaxyEnaQ3B-1-1-7,1232 galaxyEnaQ3B-1-1-7,1302 galaxyEnaQ3B-1-1-7,1308 galaxyEnaQ3B-1-617-2,1232 galaxyEnaQ3B-1-617-2,1302 galaxyEnaQ3B-1-617-2,1308 kimRnaMod,16 mccoy,789 multiz7way,946 multiz7way,948 multiz7way,1045 multiz7way,1168 phyloGenes,88 phyloGenes,499 phyloGenes,528 phyloGenes,564 phyloGenes,592 rapid,342 rappuoli,796 strainCons119way,2324 strainCons119way,2326 strainCons119way,2423 strainCons119way,2546 strainCons44way,1919 strainCons44way,1921 strainCons44way,2018 strainCons44way,2141 treangen,294 variantMuts,1329 m1 M1_library,1 M1_library,7 targets,40 m1_peptides targets,117 m2 M2_library,1 M2_library,7 targets,42 targets,123 m_bind_avg M_bind_avg,1 m_expr_avg M_expr_avg_Expression,1 ma Starr_Bloom,255 Starr_Bloom_bind,249 pbmShanghai,504 mab COV2-2050Max,1 COV2-2050Max,8 COV2-2050Total,1 COV2-2082Max,1 COV2-2082Max,8 COV2-2082Total,1 COV2-2094Max,1 COV2-2094Max,8 COV2-2094Total,1 COV2-2096Max,1 COV2-2096Max,8 COV2-2096Total,1 COV2-2165Max,1 COV2-2165Max,8 COV2-2165Total,1 COV2-2479Max,1 COV2-2479Max,8 COV2-2479Total,1 COV2-2499Max,1 COV2-2499Max,8 COV2-2499Total,1 COV2-2677Max,1 COV2-2677Max,8 COV2-2677Total,1 COV2-2832Max,1 COV2-2832Max,8 COV2-2832Total,1 LY-CoV016Max,1 LY-CoV016Max,8 LY-CoV016Total,1 REGN10933-REGN10987Max,1 REGN10933-REGN10987Max,8 REGN10933-REGN10987Total,1 REGN10933Max,1 REGN10933Max,8 REGN10933Total,1 REGN10987Max,1 REGN10987Max,8 REGN10987Total,1 bloomEscMabAvg,2 bloomEscMabAvg,16 rCR3022Max,1 rCR3022Max,8 rCR3022Total,1 mabs abEscape,166 abEscape,467 bloomEscMabAvg,170 bloomEscMabAvg,471 bloomEscMax,17 bloomEscMax,176 bloomEscMax,477 bloomEscSerumAvg,171 bloomEscSerumAvg,472 bloomEscTop,174 bloomEscTop,475 bloomEscTotal,17 escape,173 escape,474 mccoy,13 mccoy,166 mccoy,467 rappuoli,173 rappuoli,474 machine potPathoIndel,142 machinery kimTranscripts,57 transcriptome,49 maclean pond,266 macosx nextstrainSamples,781 made Q0_tracks,1007 Q0_tracks,1142 Q1_tracks,1009 Q1_tracks,1144 Q2_tracks,1009 Q2_tracks,1144 Q3_tracks,1009 Q3_tracks,1144 galaxyEna,1009 galaxyEna,1144 galaxyEnaQ0Ba-1,1005 galaxyEnaQ0Ba-1,1140 galaxyEnaQ0Ba-1-1,1005 galaxyEnaQ0Ba-1-1,1140 galaxyEnaQ0Ba-1-1-11,1005 galaxyEnaQ0Ba-1-1-11,1140 galaxyEnaQ0Ba-1-17,1005 galaxyEnaQ0Ba-1-17,1140 galaxyEnaQ0Ba-2,1005 galaxyEnaQ0Ba-2,1140 galaxyEnaQ1Ay-4,1005 galaxyEnaQ1Ay-4,1140 galaxyEnaQ1Ay-4-2,1005 galaxyEnaQ1Ay-4-2,1140 galaxyEnaQ1Ay-4-2-2,1005 galaxyEnaQ1Ay-4-2-2,1140 galaxyEnaQ1Ay-43,1005 galaxyEnaQ1Ay-43,1140 galaxyEnaQ1Ba-1-17,1005 galaxyEnaQ1Ba-1-17,1140 galaxyEnaQ2Ay-120,1005 galaxyEnaQ2Ay-120,1140 galaxyEnaQ2Ay-122,1005 galaxyEnaQ2Ay-122,1140 galaxyEnaQ2Ay-4,1005 galaxyEnaQ2Ay-4,1140 galaxyEnaQ2Ay-5,1005 galaxyEnaQ2Ay-5,1140 galaxyEnaQ2Ay-6,1005 galaxyEnaQ2Ay-6,1140 galaxyEnaQ3Ay-4,1005 galaxyEnaQ3Ay-4,1140 galaxyEnaQ3Ay-5,1005 galaxyEnaQ3Ay-5,1140 galaxyEnaQ3Ay-9,1005 galaxyEnaQ3Ay-9,1140 galaxyEnaQ3B-1-1-7,1005 galaxyEnaQ3B-1-1-7,1140 galaxyEnaQ3B-1-617-2,1005 galaxyEnaQ3B-1-617-2,1140 nextstrainParsimony,408 nextstrainSamples,576 nextstrainSamples,885 primers,361 publicAnnots,18 rosettaMhc,321 sarsCov2Phylo,62 sarsCov2Phylo,821 sarsCov2PhyloPub,76 sarsCov2PhyloPub,904 variantMuts,1167 madhugiri rfam,136 maf multiz7way,808 multiz7way,884 strainCons119way,28 strainCons119way,2262 strainCons44way,25 strainCons44way,1857 mafaddirows multiz7way,887 strainCons119way,2265 strainCons44way,1860 mafaddqrows multiz7way,892 strainCons119way,2270 strainCons44way,1865 mafft cas13Crispr,226 microdel,106 sarsCov2Phylo,608 sarsCov2Phylo,1025 sarsCov2PhyloPub,635 sarsCov2PhyloPub,1145 magnitude abEscape,318 bloomEscMabAvg,322 bloomEscMax,328 bloomEscSerumAvg,323 bloomEscTop,326 escape,325 mccoy,318 rappuoli,325 mahadeshwar pyle,314 mahmoud treangen,293 mai sarsCov2Phylo,663 sarsCov2Phylo,1146 sarsCov2PhyloPub,687 sarsCov2PhyloPub,1279 maier Q0_tracks,1261 Q0_tracks,1297 Q1_tracks,1263 Q1_tracks,1299 Q2_tracks,1263 Q2_tracks,1299 Q3_tracks,1263 Q3_tracks,1299 galaxyEna,1263 galaxyEna,1299 galaxyEnaQ0Ba-1,1259 galaxyEnaQ0Ba-1,1295 galaxyEnaQ0Ba-1-1,1259 galaxyEnaQ0Ba-1-1,1295 galaxyEnaQ0Ba-1-1-11,1259 galaxyEnaQ0Ba-1-1-11,1295 galaxyEnaQ0Ba-1-17,1259 galaxyEnaQ0Ba-1-17,1295 galaxyEnaQ0Ba-2,1259 galaxyEnaQ0Ba-2,1295 galaxyEnaQ1Ay-4,1259 galaxyEnaQ1Ay-4,1295 galaxyEnaQ1Ay-4-2,1259 galaxyEnaQ1Ay-4-2,1295 galaxyEnaQ1Ay-4-2-2,1259 galaxyEnaQ1Ay-4-2-2,1295 galaxyEnaQ1Ay-43,1259 galaxyEnaQ1Ay-43,1295 galaxyEnaQ1Ba-1-17,1259 galaxyEnaQ1Ba-1-17,1295 galaxyEnaQ2Ay-120,1259 galaxyEnaQ2Ay-120,1295 galaxyEnaQ2Ay-122,1259 galaxyEnaQ2Ay-122,1295 galaxyEnaQ2Ay-4,1259 galaxyEnaQ2Ay-4,1295 galaxyEnaQ2Ay-5,1259 galaxyEnaQ2Ay-5,1295 galaxyEnaQ2Ay-6,1259 galaxyEnaQ2Ay-6,1295 galaxyEnaQ3Ay-4,1259 galaxyEnaQ3Ay-4,1295 galaxyEnaQ3Ay-5,1259 galaxyEnaQ3Ay-5,1295 galaxyEnaQ3Ay-9,1259 galaxyEnaQ3Ay-9,1295 galaxyEnaQ3B-1-1-7,1259 galaxyEnaQ3B-1-1-7,1295 galaxyEnaQ3B-1-617-2,1259 galaxyEnaQ3B-1-617-2,1295 pond,256 mailing Calu3_07hpi,332 IgG_Z-score-_COVID-19_patients,388 IgM_Z-score-_COVID-19_patients,388 ORFs,330 PhyloCSF_smooth,657 Starr_Bloom,224 Starr_Bloom_bind,218 Vero6_05hpi,332 Vero6_24hpi,332 abEscape,676 artic,170 articV4,170 articV4_1,183 bloomEscMabAvg,680 bloomEscMax,686 bloomEscSerumAvg,681 bloomEscTop,684 bpmIggCovidSum,397 bpmIgmCovidSum,397 cas13Crispr,455 contacts,383 escape,683 icshape,167 kimRnaMod,217 kimTranscripts,435 mccoy,676 microdel,174 ncbiGeneBGP,150 ncbiProducts,166 nextstrainFreq,255 pbm,397 pbmShanghai,480 phyloGenes,432 poranHla1,245 poranHla2,245 rapid,324 rappuoli,683 resist,127 resistPred,219 spikeMuts,342 swift,253 transcriptome,441 unipCov2AliSwissprot,387 unipCov2Chain,617 unipCov2DisulfBond,613 unipCov2Domain,612 unipCov2LocCytopl,612 unipCov2LocExtra,612 unipCov2LocSignal,613 unipCov2LocTransMemb,613 unipCov2Modif,616 unipCov2Mut,613 unipCov2Other,613 unipCov2Repeat,611 unipCov2Struct,615 varskip,176 weizmanOrfs,338 main PhyloCSF_smooth,93 PhyloCSFpower,108 sarsCov2Phylo,93 sarsCov2PhyloPub,106 unipCov2AliSwissprot,248 unipCov2Chain,478 unipCov2DisulfBond,474 unipCov2Domain,473 unipCov2Interest,154 unipCov2LocCytopl,473 unipCov2LocExtra,473 unipCov2LocSignal,474 unipCov2LocTransMemb,474 unipCov2Modif,477 unipCov2Mut,474 unipCov2Other,474 unipCov2Repeat,472 unipCov2Struct,476 maintain strainCons119way,1776 strainCons44way,1371 maintaining spikeMuts,374 variantMuts,1201 maintains nextstrainFreq,53 nextstrainParsimony,70 maio problematicSites,404 problematicSites,409 problematicSites,539 problematicSites,561 recomb,337 sarsCov2Phylo,623 sarsCov2Phylo,1050 sarsCov2Phylo,1072 sarsCov2PhyloPub,650 sarsCov2PhyloPub,1170 sarsCov2PhyloPub,1192 sarsCov2PhyloPub,1225 make Q0_tracks,1193 Q1_tracks,1195 Q2_tracks,1195 Q3_tracks,1195 galaxyEna,1195 galaxyEnaQ0Ba-1,1191 galaxyEnaQ0Ba-1-1,1191 galaxyEnaQ0Ba-1-1-11,1191 galaxyEnaQ0Ba-1-17,1191 galaxyEnaQ0Ba-2,1191 galaxyEnaQ1Ay-4,1191 galaxyEnaQ1Ay-4-2,1191 galaxyEnaQ1Ay-4-2-2,1191 galaxyEnaQ1Ay-43,1191 galaxyEnaQ1Ba-1-17,1191 galaxyEnaQ2Ay-120,1191 galaxyEnaQ2Ay-122,1191 galaxyEnaQ2Ay-4,1191 galaxyEnaQ2Ay-5,1191 galaxyEnaQ2Ay-6,1191 galaxyEnaQ3Ay-4,1191 galaxyEnaQ3Ay-5,1191 galaxyEnaQ3Ay-9,1191 galaxyEnaQ3B-1-1-7,1191 galaxyEnaQ3B-1-617-2,1191 gold,75 nextstrainSamples,431 pbmShanghai,275 problematicSites,47 rosettaMhc,109 sarsCov2Phylo,467 sarsCov2PhyloPub,496 makeblastdb addgene,190 makedoc IgG_Z-score-_COVID-19_patients,278 IgM_Z-score-_COVID-19_patients,278 bpmIggCovidSum,287 bpmIgmCovidSum,287 pbm,287 pbmShanghai,404 makes sarsCov2PhyloPub,709 sarsCov2PhyloPub,745 making addgene,246 ncbiGeneBGP,195 ncbiProducts,211 resistPred,261 unipCov2AliSwissprot,434 unipCov2Chain,663 unipCov2DisulfBond,659 unipCov2Domain,658 unipCov2Interest,317 unipCov2LocCytopl,658 unipCov2LocExtra,658 unipCov2LocSignal,659 unipCov2LocTransMemb,659 unipCov2Modif,662 unipCov2Mut,659 unipCov2Other,659 unipCov2Repeat,657 unipCov2Struct,661 maleki microdel,288 malloy poranHla1,264 poranHla2,264 malone abEscape,698 bloomEscMabAvg,702 bloomEscMax,708 bloomEscSerumAvg,703 bloomEscTop,706 escape,705 mccoy,698 rappuoli,705 mammalian multiz7way,1023 strainCons119way,2401 strainCons44way,1996 mammoth crisprDet,33 crisprDet,56 crisprDet,57 manar variantMuts,1469 manenti abEscape,879 bloomEscMabAvg,883 bloomEscMax,889 bloomEscSerumAvg,884 bloomEscTop,887 escape,886 mccoy,879 rappuoli,886 manganaro abEscape,877 bloomEscMabAvg,881 bloomEscMax,887 bloomEscSerumAvg,882 bloomEscTop,885 escape,884 mccoy,877 rappuoli,884 manja rfam,114 manual Calu3_07hpi,228 ORFs,226 Vero6_05hpi,228 Vero6_24hpi,228 primers,129 weizmanOrfs,234 manually abEscape,631 abEscape,644 bloomEscMabAvg,635 bloomEscMabAvg,648 bloomEscMax,641 bloomEscMax,654 bloomEscSerumAvg,636 bloomEscSerumAvg,649 bloomEscTop,639 bloomEscTop,652 contacts,108 escape,638 escape,651 gordon2,222 mccoy,631 mccoy,644 rappuoli,638 rappuoli,651 resist,59 rfam,60 targets,217 transcriptome,265 manuscript rosettaMhc,396 many addgene,27 iedb,54 kimTranscripts,62 microdel,133 microdel,263 ncbiGeneBGP,182 ncbiProducts,198 problematicSites,276 recomb,108 strainCons119way,1928 strainCons44way,1523 transcriptome,54 variantMuts,819 map Calu3_07hpi,201 ORFs,199 Vero6_05hpi,201 Vero6_24hpi,201 gordon2,29 gordon2,261 unipCov2AliSwissprot,39 weizmanOrfs,207 mapped M1_library,10 M2_library,10 Q0_tracks,859 Q1_tracks,861 Q2_tracks,861 Q3_tracks,861 augustusGene,298 cas13Crispr,340 crisprDet,139 galaxyEna,861 galaxyEnaQ0Ba-1,857 galaxyEnaQ0Ba-1-1,857 galaxyEnaQ0Ba-1-1-11,857 galaxyEnaQ0Ba-1-17,857 galaxyEnaQ0Ba-2,857 galaxyEnaQ1Ay-4,857 galaxyEnaQ1Ay-4-2,857 galaxyEnaQ1Ay-4-2-2,857 galaxyEnaQ1Ay-43,857 galaxyEnaQ1Ba-1-17,857 galaxyEnaQ2Ay-120,857 galaxyEnaQ2Ay-122,857 galaxyEnaQ2Ay-4,857 galaxyEnaQ2Ay-5,857 galaxyEnaQ2Ay-6,857 galaxyEnaQ3Ay-4,857 galaxyEnaQ3Ay-5,857 galaxyEnaQ3Ay-9,857 galaxyEnaQ3B-1-1-7,857 galaxyEnaQ3B-1-617-2,857 primers,284 unipCov2AliSwissprot,26 unipCov2AliSwissprot,195 unipCov2Chain,25 unipCov2Chain,68 unipCov2Chain,79 unipCov2Chain,90 unipCov2Chain,101 unipCov2Chain,448 unipCov2DisulfBond,21 unipCov2DisulfBond,64 unipCov2DisulfBond,75 unipCov2DisulfBond,86 unipCov2DisulfBond,97 unipCov2DisulfBond,444 unipCov2Domain,20 unipCov2Domain,63 unipCov2Domain,74 unipCov2Domain,85 unipCov2Domain,96 unipCov2Domain,443 unipCov2Interest,27 unipCov2Interest,124 unipCov2LocCytopl,20 unipCov2LocCytopl,63 unipCov2LocCytopl,74 unipCov2LocCytopl,85 unipCov2LocCytopl,96 unipCov2LocCytopl,443 unipCov2LocExtra,20 unipCov2LocExtra,63 unipCov2LocExtra,74 unipCov2LocExtra,85 unipCov2LocExtra,96 unipCov2LocExtra,443 unipCov2LocSignal,21 unipCov2LocSignal,64 unipCov2LocSignal,75 unipCov2LocSignal,86 unipCov2LocSignal,97 unipCov2LocSignal,444 unipCov2LocTransMemb,21 unipCov2LocTransMemb,64 unipCov2LocTransMemb,75 unipCov2LocTransMemb,86 unipCov2LocTransMemb,97 unipCov2LocTransMemb,444 unipCov2Modif,24 unipCov2Modif,67 unipCov2Modif,78 unipCov2Modif,89 unipCov2Modif,100 unipCov2Modif,447 unipCov2Mut,21 unipCov2Mut,64 unipCov2Mut,75 unipCov2Mut,86 unipCov2Mut,97 unipCov2Mut,444 unipCov2Other,21 unipCov2Other,64 unipCov2Other,75 unipCov2Other,86 unipCov2Other,97 unipCov2Other,444 unipCov2Repeat,19 unipCov2Repeat,62 unipCov2Repeat,73 unipCov2Repeat,84 unipCov2Repeat,95 unipCov2Repeat,442 unipCov2Struct,23 unipCov2Struct,66 unipCov2Struct,77 unipCov2Struct,88 unipCov2Struct,99 unipCov2Struct,446 mapping Calu3_07hpi,135 IgG_Z-score-_COVID-19_patients,431 IgM_Z-score-_COVID-19_patients,431 ORFs,133 Q0_tracks,858 Q1_tracks,860 Q2_tracks,860 Q3_tracks,860 Vero6_05hpi,135 Vero6_24hpi,135 abEscape,705 abEscape,748 abEscape,842 addgene,10 artic,10 articV4,10 articV4_1,10 bloomEscMabAvg,709 bloomEscMabAvg,752 bloomEscMabAvg,846 bloomEscMax,715 bloomEscMax,758 bloomEscMax,852 bloomEscSerumAvg,710 bloomEscSerumAvg,753 bloomEscSerumAvg,847 bloomEscTop,713 bloomEscTop,756 bloomEscTop,850 bpmIggCovidSum,440 bpmIgmCovidSum,440 cas13Crispr,6 crisprDet,6 cytoBandIdeo,7 escape,712 escape,755 escape,849 galaxyEna,860 galaxyEnaQ0Ba-1,856 galaxyEnaQ0Ba-1-1,856 galaxyEnaQ0Ba-1-1-11,856 galaxyEnaQ0Ba-1-17,856 galaxyEnaQ0Ba-2,856 galaxyEnaQ1Ay-4,856 galaxyEnaQ1Ay-4-2,856 galaxyEnaQ1Ay-4-2-2,856 galaxyEnaQ1Ay-43,856 galaxyEnaQ1Ba-1-17,856 galaxyEnaQ2Ay-120,856 galaxyEnaQ2Ay-122,856 galaxyEnaQ2Ay-4,856 galaxyEnaQ2Ay-5,856 galaxyEnaQ2Ay-6,856 galaxyEnaQ3Ay-4,856 galaxyEnaQ3Ay-5,856 galaxyEnaQ3Ay-9,856 galaxyEnaQ3B-1-1-7,856 galaxyEnaQ3B-1-617-2,856 gap,4 gc5BaseBw,8 gold,5 kimIvtCov,14 mccoy,705 mccoy,748 mccoy,842 pbm,440 primers,8 problematicSites,13 problematicSitesCaution,10 problematicSitesMask,10 publicAnnots,10 rapid,12 rappuoli,712 rappuoli,755 rappuoli,849 strainCons119way,415 strainCons44way,363 swift,7 ucscToINSDC,10 ucscToRefSeq,5 unipCov2AliSwissprot,44 unipCov2AliSwissprot,207 unipCov2Chain,460 unipCov2DisulfBond,456 unipCov2Domain,455 unipCov2Interest,136 unipCov2LocCytopl,455 unipCov2LocExtra,455 unipCov2LocSignal,456 unipCov2LocTransMemb,456 unipCov2Modif,459 unipCov2Mut,456 unipCov2Other,456 unipCov2Repeat,454 unipCov2Struct,458 varskip,10 varskip1a,6 varskip2,6 varskip2b,8 varskipVsl1a,8 weizmanOrfs,141 mar augustusGene,309 cd8escape,226 crisprDet,107 sarsCov2Phylo,1137 sarsCov2PhyloPub,1270 variantMuts,575 variantMuts,663 mar-2020 variantAaMutsV2_B_1_429,8 variantAaMutsV2_C_37,8 variantNucMutsV2_B_1_429,8 variantNucMutsV2_C_37,8 march cas13Crispr,179 resistPred,141 marco variantMuts,1471 mario augustusGene,102 augustusGene,283 mark multiz7way,900 strainCons119way,2278 strainCons44way,1873 unipCov2AliSwissprot,216 unipCov2AliSwissprot,415 unipCov2Chain,469 unipCov2Chain,645 unipCov2DisulfBond,465 unipCov2DisulfBond,641 unipCov2Domain,464 unipCov2Domain,640 unipCov2Interest,145 unipCov2Interest,298 unipCov2LocCytopl,464 unipCov2LocCytopl,640 unipCov2LocExtra,464 unipCov2LocExtra,640 unipCov2LocSignal,465 unipCov2LocSignal,641 unipCov2LocTransMemb,465 unipCov2LocTransMemb,641 unipCov2Modif,468 unipCov2Modif,644 unipCov2Mut,465 unipCov2Mut,641 unipCov2Other,465 unipCov2Other,641 unipCov2Repeat,463 unipCov2Repeat,639 unipCov2Struct,467 unipCov2Struct,643 marked gordon2,96 markers epitopes,46 epitopes,62 recomb,249 markov PhyloCSF_smooth,436 PhyloCSFpower,451 augustusGene,325 multiz7way,988 multiz7way,1085 strainCons119way,175 strainCons119way,1893 strainCons119way,2366 strainCons119way,2463 strainCons44way,123 strainCons44way,1488 strainCons44way,1961 strainCons44way,2058 marks nextstrainSamples,416 sarsCov2Phylo,452 sarsCov2PhyloPub,481 martin Q0_tracks,1325 Q1_tracks,1327 Q2_tracks,1327 Q3_tracks,1327 galaxyEna,1327 galaxyEnaQ0Ba-1,1323 galaxyEnaQ0Ba-1-1,1323 galaxyEnaQ0Ba-1-1-11,1323 galaxyEnaQ0Ba-1-17,1323 galaxyEnaQ0Ba-2,1323 galaxyEnaQ1Ay-4,1323 galaxyEnaQ1Ay-4-2,1323 galaxyEnaQ1Ay-4-2-2,1323 galaxyEnaQ1Ay-43,1323 galaxyEnaQ1Ba-1-17,1323 galaxyEnaQ2Ay-120,1323 galaxyEnaQ2Ay-122,1323 galaxyEnaQ2Ay-4,1323 galaxyEnaQ2Ay-5,1323 galaxyEnaQ2Ay-6,1323 galaxyEnaQ3Ay-4,1323 galaxyEnaQ3Ay-5,1323 galaxyEnaQ3Ay-9,1323 galaxyEnaQ3B-1-1-7,1323 galaxyEnaQ3B-1-617-2,1323 pond,250 marz rfam,115 mask problematicSites,130 problematicSites,145 problematicSites,463 problematicSitesMask,1 masked cpgIslandExt,192 cpgIslandExt,198 cpgIslandExt,328 cpgIslandExtUnmasked,195 cpgIslandExtUnmasked,201 cpgIslandExtUnmasked,331 cpgIslandSuper,192 cpgIslandSuper,198 cpgIslandSuper,328 windowmaskerSdust,5 windowmaskerSdust,16 masker windowmaskerSdust,102 masking cpgIslandExt,304 cpgIslandExtUnmasked,307 cpgIslandSuper,304 problematicSites,6 problematicSites,379 problematicSitesMask,5 sarsCov2Phylo,1062 sarsCov2PhyloPub,1182 maskoutfa cpgIslandExt,414 cpgIslandExtUnmasked,417 cpgIslandSuper,414 masks sarsCov2Phylo,613 sarsCov2PhyloPub,640 mass gordon2,58 massa vaccines,513 master microdel,215 nextstrainClade,93 problematicSites,496 sarsCov2Phylo,931 match PhyloCSF_smooth,347 PhyloCSFpower,362 cas13Crispr,284 gordon2,228 pdb,36 primers,24 targets,70 transcriptome,327 vaccines,256 matches pdb,8 pdb,67 rnaStructRangan,32 material problematicSites,309 materials multiz7way,975 strainCons119way,2353 strainCons44way,1948 matija microdel,256 matplotlib IgG_Z-score-_COVID-19_patients,243 IgM_Z-score-_COVID-19_patients,243 bpmIggCovidSum,252 bpmIgmCovidSum,252 pbm,252 pbmShanghai,391 matrix Q0_tracks,1172 Q1_tracks,1174 Q2_tracks,1174 Q3_tracks,1174 galaxyEna,1174 galaxyEnaQ0Ba-1,1170 galaxyEnaQ0Ba-1-1,1170 galaxyEnaQ0Ba-1-1-11,1170 galaxyEnaQ0Ba-1-17,1170 galaxyEnaQ0Ba-2,1170 galaxyEnaQ1Ay-4,1170 galaxyEnaQ1Ay-4-2,1170 galaxyEnaQ1Ay-4-2-2,1170 galaxyEnaQ1Ay-43,1170 galaxyEnaQ1Ba-1-17,1170 galaxyEnaQ2Ay-120,1170 galaxyEnaQ2Ay-122,1170 galaxyEnaQ2Ay-4,1170 galaxyEnaQ2Ay-5,1170 galaxyEnaQ2Ay-6,1170 galaxyEnaQ3Ay-4,1170 galaxyEnaQ3Ay-5,1170 galaxyEnaQ3Ay-9,1170 galaxyEnaQ3B-1-1-7,1170 galaxyEnaQ3B-1-617-2,1170 multiz7way,754 strainCons119way,1514 strainCons119way,1706 strainCons44way,1184 strainCons44way,1301 matthew microdel,253 poranHla1,263 poranHla2,263 vaccines,494 mature gordon2,45 gordon2,214 ncbiProducts,6 ncbiProducts,16 ncbiProducts,45 unipCov2Chain,136 unipCov2Chain,177 unipCov2DisulfBond,132 unipCov2DisulfBond,173 unipCov2Domain,131 unipCov2Domain,172 unipCov2LocCytopl,131 unipCov2LocCytopl,172 unipCov2LocExtra,131 unipCov2LocExtra,172 unipCov2LocSignal,132 unipCov2LocSignal,173 unipCov2LocTransMemb,132 unipCov2LocTransMemb,173 unipCov2Modif,135 unipCov2Modif,176 unipCov2Mut,132 unipCov2Mut,173 unipCov2Other,132 unipCov2Other,173 unipCov2Repeat,130 unipCov2Repeat,171 unipCov2Struct,134 unipCov2Struct,175 mauldin addgene,241 maurano microdel,255 maurer-stroh sarsCov2Phylo,982 sarsCov2PhyloPub,1102 max A_120Max,8 A_21Max,8 A_45Max,8 B_113Max,8 B_26Max,8 COV2-2050Max,6 COV2-2082Max,6 COV2-2094Max,6 COV2-2096Max,6 COV2-2165Max,6 COV2-2479Max,6 COV2-2499Max,6 COV2-2677Max,6 COV2-2832Max,6 C_104Max,8 C_32Max,8 D_33Max,8 D_76Max,8 E_104Max,8 E_28Max,8 F_115Max,8 F_48Max,8 G_18Max,8 G_94Max,8 H_152Max,8 H_61Max,8 I_102Max,8 I_26Max,8 J_121Max,8 J_15Max,8 K_103Max,8 K_29Max,8 LY-CoV016Max,6 REGN10933-REGN10987Max,6 REGN10933Max,6 REGN10987Max,6 bloomEscMax,2 bloomEscTop,13 kimNp,76 ncbiGeneBGP,169 ncbiProducts,185 pyle,143 rCR3022Max,6 resist,62 maximally cpgIslandExt,250 cpgIslandExtUnmasked,253 cpgIslandSuper,250 multiz7way,651 strainCons119way,1000 strainCons44way,948 maximilian primers,363 unipCov2AliSwissprot,406 unipCov2Chain,636 unipCov2DisulfBond,632 unipCov2Domain,631 unipCov2Interest,289 unipCov2LocCytopl,631 unipCov2LocExtra,631 unipCov2LocSignal,632 unipCov2LocTransMemb,632 unipCov2Modif,635 unipCov2Mut,632 unipCov2Other,632 unipCov2Repeat,630 unipCov2Struct,634 maximization PhyloCSF_smooth,546 PhyloCSFpower,561 maximum abEscape,389 abEscape,618 bloomEscMabAvg,393 bloomEscMabAvg,622 bloomEscMax,10 bloomEscMax,399 bloomEscMax,628 bloomEscSerumAvg,394 bloomEscSerumAvg,623 bloomEscTop,397 bloomEscTop,626 escape,396 escape,625 mccoy,389 mccoy,618 nextstrainSamples,527 rappuoli,396 rappuoli,625 recomb,206 maximum-likelihood nextstrainFreq,419 nextstrainSamples,1039 nextstrainSamples,1071 sarsCov2Phylo,1129 sarsCov2PhyloPub,1262 maxintron vaccines,258 maxtracks augustusGene,139 may cas13Crispr,75 cd8escape,72 cpgIslandExt,36 cpgIslandExtUnmasked,39 cpgIslandSuper,36 gc5BaseBw,40 kimIvtCov,192 nextstrainParsimony,231 nextstrainSamples,224 problematicSites,156 problematicSites,162 problematicSites,558 rapid,181 resistPred,5 sarsCov2Phylo,60 sarsCov2Phylo,849 sarsCov2Phylo,1069 sarsCov2Phylo,1167 sarsCov2PhyloPub,74 sarsCov2PhyloPub,1189 sarsCov2PhyloPub,1300 simpleRepeat,43 swift,118 treangen,169 unipCov2AliSwissprot,502 unipCov2Chain,731 unipCov2DisulfBond,727 unipCov2Domain,726 unipCov2Interest,385 unipCov2LocCytopl,726 unipCov2LocExtra,726 unipCov2LocSignal,727 unipCov2LocTransMemb,727 unipCov2Modif,730 unipCov2Mut,727 unipCov2Other,727 unipCov2Repeat,725 unipCov2Struct,729 variantAaMuts_BA_4,14 variantAaMuts_BA_5,14 variantMuts,291 variantMuts,416 variantMuts,1130 variantNucMuts_BA_4,15 variantNucMuts_BA_5,15 maya microdel,282 mb rapid,344 mc abEscape,834 bloomEscMabAvg,838 bloomEscMax,844 bloomEscSerumAvg,839 bloomEscTop,842 escape,841 mccoy,834 rappuoli,841 mcbroome recomb,328 mccoy abEscape,214 abEscape,540 bloomEscMabAvg,218 bloomEscMabAvg,544 bloomEscMax,224 bloomEscMax,550 bloomEscSerumAvg,219 bloomEscSerumAvg,545 bloomEscTop,222 bloomEscTop,548 escape,221 escape,547 mccoy,1 mccoy,3 mccoy,214 mccoy,540 rappuoli,221 rappuoli,547 vaccines,495 mccrone sarsCov2Phylo,943 sarsCov2PhyloPub,1063 variantMuts,1250 md treangen,296 treangen,309 mdu-phl microdel,225 mean pbmShanghai,313 meaning abEscape,339 bloomEscMabAvg,343 bloomEscMax,349 bloomEscSerumAvg,344 bloomEscTop,347 escape,346 mccoy,339 pond,160 rappuoli,346 meaningful PhyloCSF_smooth,255 PhyloCSFpower,270 means Q0_tracks,446 Q1_tracks,448 Q2_tracks,448 Q3_tracks,448 galaxyEna,448 galaxyEnaQ0Ba-1,444 galaxyEnaQ0Ba-1-1,444 galaxyEnaQ0Ba-1-1-11,444 galaxyEnaQ0Ba-1-17,444 galaxyEnaQ0Ba-2,444 galaxyEnaQ1Ay-4,444 galaxyEnaQ1Ay-4-2,444 galaxyEnaQ1Ay-4-2-2,444 galaxyEnaQ1Ay-43,444 galaxyEnaQ1Ba-1-17,444 galaxyEnaQ2Ay-120,444 galaxyEnaQ2Ay-122,444 galaxyEnaQ2Ay-4,444 galaxyEnaQ2Ay-5,444 galaxyEnaQ2Ay-6,444 galaxyEnaQ3Ay-4,444 galaxyEnaQ3Ay-5,444 galaxyEnaQ3Ay-9,444 galaxyEnaQ3B-1-1-7,444 galaxyEnaQ3B-1-617-2,444 kimRnaMod,97 pbmShanghai,345 pyle,120 meant transcriptome,237 measure PhyloCSFpower,10 Starr_Bloom,53 Starr_Bloom_bind,50 abEscape,71 bloomEscMabAvg,75 bloomEscMax,81 bloomEscSerumAvg,76 bloomEscTop,79 escape,78 mccoy,71 rappuoli,78 strainCons119way,307 strainCons44way,255 measured abEscape,321 bloomEscMabAvg,325 bloomEscMax,331 bloomEscSerumAvg,326 bloomEscTop,329 escape,328 mccoy,321 rappuoli,328 measurements pyle,40 strainCons119way,113 strainCons44way,61 measures Starr_Bloom,100 Starr_Bloom_bind,94 strainCons119way,212 strainCons44way,160 measuring Starr_Bloom,23 Starr_Bloom_bind,24 mechanisms Calu3_07hpi,153 ORFs,151 Vero6_05hpi,153 Vero6_24hpi,153 kimTranscripts,53 pyle,302 transcriptome,45 weizmanOrfs,159 median Q0_tracks,585 Q1_tracks,587 Q2_tracks,587 Q3_tracks,587 galaxyEna,587 galaxyEnaQ0Ba-1,583 galaxyEnaQ0Ba-1-1,583 galaxyEnaQ0Ba-1-1-11,583 galaxyEnaQ0Ba-1-17,583 galaxyEnaQ0Ba-2,583 galaxyEnaQ1Ay-4,583 galaxyEnaQ1Ay-4-2,583 galaxyEnaQ1Ay-4-2-2,583 galaxyEnaQ1Ay-43,583 galaxyEnaQ1Ba-1-17,583 galaxyEnaQ2Ay-120,583 galaxyEnaQ2Ay-122,583 galaxyEnaQ2Ay-4,583 galaxyEnaQ2Ay-5,583 galaxyEnaQ2Ay-6,583 galaxyEnaQ3Ay-4,583 galaxyEnaQ3Ay-5,583 galaxyEnaQ3Ay-9,583 galaxyEnaQ3B-1-1-7,583 galaxyEnaQ3B-1-617-2,583 treangen,141 medicine spikeMuts,366 spikeMuts,402 vaccines,56 vaccines,72 vaccines,625 medium strainCons119way,1728 strainCons44way,1323 mednet vaccines,552 medrxiv variantMuts,1393 variantMuts,1410 variantMuts,1430 meeting treangen,147 megill nextstrainClade,244 nextstrainFreq,379 nextstrainGene,193 nextstrainParsimony,446 nextstrainSamples,999 melidou sarsCov2Phylo,984 sarsCov2PhyloPub,1104 mellifera augustusGene,216 membrane cd8escape,108 memory nextstrainSamples,796 meng pbmShanghai,508 mentioned vaccines,199 mentored contacts,403 menu multiz7way,432 multiz7way,489 strainCons119way,782 strainCons119way,839 strainCons44way,730 strainCons44way,787 mers cas13Crispr,100 multiz7way,774 mers-cov cas13Crispr,207 cas13Crispr,213 cas13Crispr,268 cas13Crispr,298 potPathoIndel,44 messenger vaccines,553 met gordon2,149 metadata Q0_tracks,72 Q0_tracks,96 Q0_tracks,229 Q0_tracks,1020 Q0_tracks,1197 Q1_tracks,74 Q1_tracks,98 Q1_tracks,231 Q1_tracks,1022 Q1_tracks,1199 Q2_tracks,74 Q2_tracks,98 Q2_tracks,231 Q2_tracks,1022 Q2_tracks,1199 Q3_tracks,74 Q3_tracks,98 Q3_tracks,231 Q3_tracks,1022 Q3_tracks,1199 galaxyEna,74 galaxyEna,98 galaxyEna,231 galaxyEna,1022 galaxyEna,1199 galaxyEnaQ0Ba-1,70 galaxyEnaQ0Ba-1,94 galaxyEnaQ0Ba-1,227 galaxyEnaQ0Ba-1,1018 galaxyEnaQ0Ba-1,1195 galaxyEnaQ0Ba-1-1,70 galaxyEnaQ0Ba-1-1,94 galaxyEnaQ0Ba-1-1,227 galaxyEnaQ0Ba-1-1,1018 galaxyEnaQ0Ba-1-1,1195 galaxyEnaQ0Ba-1-1-11,70 galaxyEnaQ0Ba-1-1-11,94 galaxyEnaQ0Ba-1-1-11,227 galaxyEnaQ0Ba-1-1-11,1018 galaxyEnaQ0Ba-1-1-11,1195 galaxyEnaQ0Ba-1-17,70 galaxyEnaQ0Ba-1-17,94 galaxyEnaQ0Ba-1-17,227 galaxyEnaQ0Ba-1-17,1018 galaxyEnaQ0Ba-1-17,1195 galaxyEnaQ0Ba-2,70 galaxyEnaQ0Ba-2,94 galaxyEnaQ0Ba-2,227 galaxyEnaQ0Ba-2,1018 galaxyEnaQ0Ba-2,1195 galaxyEnaQ1Ay-4,70 galaxyEnaQ1Ay-4,94 galaxyEnaQ1Ay-4,227 galaxyEnaQ1Ay-4,1018 galaxyEnaQ1Ay-4,1195 galaxyEnaQ1Ay-4-2,70 galaxyEnaQ1Ay-4-2,94 galaxyEnaQ1Ay-4-2,227 galaxyEnaQ1Ay-4-2,1018 galaxyEnaQ1Ay-4-2,1195 galaxyEnaQ1Ay-4-2-2,70 galaxyEnaQ1Ay-4-2-2,94 galaxyEnaQ1Ay-4-2-2,227 galaxyEnaQ1Ay-4-2-2,1018 galaxyEnaQ1Ay-4-2-2,1195 galaxyEnaQ1Ay-43,70 galaxyEnaQ1Ay-43,94 galaxyEnaQ1Ay-43,227 galaxyEnaQ1Ay-43,1018 galaxyEnaQ1Ay-43,1195 galaxyEnaQ1Ba-1-17,70 galaxyEnaQ1Ba-1-17,94 galaxyEnaQ1Ba-1-17,227 galaxyEnaQ1Ba-1-17,1018 galaxyEnaQ1Ba-1-17,1195 galaxyEnaQ2Ay-120,70 galaxyEnaQ2Ay-120,94 galaxyEnaQ2Ay-120,227 galaxyEnaQ2Ay-120,1018 galaxyEnaQ2Ay-120,1195 galaxyEnaQ2Ay-122,70 galaxyEnaQ2Ay-122,94 galaxyEnaQ2Ay-122,227 galaxyEnaQ2Ay-122,1018 galaxyEnaQ2Ay-122,1195 galaxyEnaQ2Ay-4,70 galaxyEnaQ2Ay-4,94 galaxyEnaQ2Ay-4,227 galaxyEnaQ2Ay-4,1018 galaxyEnaQ2Ay-4,1195 galaxyEnaQ2Ay-5,70 galaxyEnaQ2Ay-5,94 galaxyEnaQ2Ay-5,227 galaxyEnaQ2Ay-5,1018 galaxyEnaQ2Ay-5,1195 galaxyEnaQ2Ay-6,70 galaxyEnaQ2Ay-6,94 galaxyEnaQ2Ay-6,227 galaxyEnaQ2Ay-6,1018 galaxyEnaQ2Ay-6,1195 galaxyEnaQ3Ay-4,70 galaxyEnaQ3Ay-4,94 galaxyEnaQ3Ay-4,227 galaxyEnaQ3Ay-4,1018 galaxyEnaQ3Ay-4,1195 galaxyEnaQ3Ay-5,70 galaxyEnaQ3Ay-5,94 galaxyEnaQ3Ay-5,227 galaxyEnaQ3Ay-5,1018 galaxyEnaQ3Ay-5,1195 galaxyEnaQ3Ay-9,70 galaxyEnaQ3Ay-9,94 galaxyEnaQ3Ay-9,227 galaxyEnaQ3Ay-9,1018 galaxyEnaQ3Ay-9,1195 galaxyEnaQ3B-1-1-7,70 galaxyEnaQ3B-1-1-7,94 galaxyEnaQ3B-1-1-7,227 galaxyEnaQ3B-1-1-7,1018 galaxyEnaQ3B-1-1-7,1195 galaxyEnaQ3B-1-617-2,70 galaxyEnaQ3B-1-617-2,94 galaxyEnaQ3B-1-617-2,227 galaxyEnaQ3B-1-617-2,1018 galaxyEnaQ3B-1-617-2,1195 nextstrainClade,152 nextstrainFreq,64 nextstrainParsimony,81 nextstrainParsimony,384 nextstrainSamples,739 nextstrainSamples,990 metadata.tsv nextstrainFreq,311 method PhyloCSF_smooth,713 PhyloCSFpower,684 cas13Crispr,192 phyloGenes,505 recomb,88 rosettaMhc,89 strainCons119way,177 strainCons119way,2051 strainCons44way,125 strainCons44way,1646 methodology cd8escape,179 methods Calu3_07hpi,76 Calu3_07hpi,77 IgG_Z-score-_COVID-19_patients,204 IgM_Z-score-_COVID-19_patients,204 ORFs,74 ORFs,75 PhyloCSF_smooth,363 PhyloCSFpower,378 Q0_tracks,802 Q1_tracks,804 Q2_tracks,804 Q3_tracks,804 Starr_Bloom,169 Starr_Bloom_bind,163 Vero6_05hpi,76 Vero6_05hpi,77 Vero6_24hpi,76 Vero6_24hpi,77 abEscape,287 abEscape,567 addgene,148 artic,46 articV4,49 articV4_1,60 augustusGene,46 bloomEscMabAvg,291 bloomEscMabAvg,571 bloomEscMax,297 bloomEscMax,577 bloomEscSerumAvg,292 bloomEscSerumAvg,572 bloomEscTop,295 bloomEscTop,575 bpmIggCovidSum,213 bpmIgmCovidSum,213 cd8escape,132 contacts,93 cpgIslandExt,224 cpgIslandExtUnmasked,227 cpgIslandSuper,224 crisprDet,136 escape,294 escape,574 galaxyEna,804 galaxyEnaQ0Ba-1,800 galaxyEnaQ0Ba-1-1,800 galaxyEnaQ0Ba-1-1-11,800 galaxyEnaQ0Ba-1-17,800 galaxyEnaQ0Ba-2,800 galaxyEnaQ1Ay-4,800 galaxyEnaQ1Ay-4-2,800 galaxyEnaQ1Ay-4-2-2,800 galaxyEnaQ1Ay-43,800 galaxyEnaQ1Ba-1-17,800 galaxyEnaQ2Ay-120,800 galaxyEnaQ2Ay-122,800 galaxyEnaQ2Ay-4,800 galaxyEnaQ2Ay-5,800 galaxyEnaQ2Ay-6,800 galaxyEnaQ3Ay-4,800 galaxyEnaQ3Ay-5,800 galaxyEnaQ3Ay-9,800 galaxyEnaQ3B-1-1-7,800 galaxyEnaQ3B-1-617-2,800 genscan,130 genscan,197 gordon2,174 icshape,26 iedb,56 kimIvtCov,163 kimTranscripts,237 mccoy,287 mccoy,567 microdel,72 multiz7way,570 multiz7way,977 multiz7way,1092 nextstrainClade,119 nextstrainFreq,131 nextstrainGene,89 nextstrainParsimony,286 nextstrainSamples,599 pbm,213 pbmShanghai,356 pdb,100 phyloGenes,36 phyloGenes,445 pond,189 pond,191 poranHla1,127 poranHla1,134 poranHla2,127 poranHla2,134 potPathoIndel,99 primers,280 problematicSites,397 problematicSites,402 pyle,201 rapid,188 rapid,366 rappuoli,294 rappuoli,574 recomb,76 recomb,110 rfam,39 rosettaMhc,245 rosettaMhc,349 sarsCov2Phylo,564 sarsCov2PhyloPub,589 simpleRepeat,55 strainCons119way,119 strainCons119way,246 strainCons119way,920 strainCons119way,1677 strainCons119way,1987 strainCons119way,2355 strainCons119way,2470 strainCons44way,67 strainCons44way,194 strainCons44way,868 strainCons44way,1272 strainCons44way,1582 strainCons44way,1950 strainCons44way,2065 swift,125 targets,170 transcriptome,241 treangen,193 treangen,194 unipCov2AliSwissprot,150 unipCov2Chain,403 unipCov2DisulfBond,399 unipCov2Domain,398 unipCov2Interest,79 unipCov2LocCytopl,398 unipCov2LocExtra,398 unipCov2LocSignal,399 unipCov2LocTransMemb,399 unipCov2Modif,402 unipCov2Mut,399 unipCov2Other,399 unipCov2Repeat,397 unipCov2Struct,401 vaccines,187 variantMuts,779 varskip,56 weizmanOrfs,82 weizmanOrfs,83 windowmaskerSdust,46 methylated cpgIslandExt,71 cpgIslandExt,100 cpgIslandExt,132 cpgIslandExtUnmasked,74 cpgIslandExtUnmasked,103 cpgIslandExtUnmasked,135 cpgIslandSuper,71 cpgIslandSuper,100 cpgIslandSuper,132 methylation cpgIslandExt,73 cpgIslandExtUnmasked,76 cpgIslandSuper,73 mf PhyloCSF_smooth,704 PhyloCSFpower,673 phyloGenes,494 phyloGenes,522 mg772933v1 strainCons44way,1207 mg772934v1 strainCons44way,1208 mgi kimMgiLdr3p,1 kimMgiNc3p,1 kimMgiNc5p,1 mgiseq kimMgiLdr3p,4 kimMgiNc3p,7 kimMgiNc5p,7 kimNp,13 kimNp,35 mhc cd8escape,35 iedb,21 rosettaMhc,65 mhc-i cd8escape,79 cd8escape,149 mhc-i-restricted cd8escape,216 mhc-ii targets,59 mhci cd8escape,5 mhv-a59 strainCons119way,1380 michael abEscape,800 bloomEscMabAvg,804 bloomEscMax,810 bloomEscSerumAvg,805 bloomEscTop,808 escape,807 mccoy,800 poranHla1,265 poranHla2,265 rappuoli,807 microarray IgG_Z-score-_COVID-19_patients,8 IgG_Z-score-_COVID-19_patients,21 IgG_Z-score-_COVID-19_patients,49 IgG_Z-score-_COVID-19_patients,69 IgG_Z-score-_COVID-19_patients,429 IgM_Z-score-_COVID-19_patients,8 IgM_Z-score-_COVID-19_patients,21 IgM_Z-score-_COVID-19_patients,49 IgM_Z-score-_COVID-19_patients,69 IgM_Z-score-_COVID-19_patients,429 bpmIggCovidSum,10 bpmIggCovidSum,30 bpmIggCovidSum,58 bpmIggCovidSum,78 bpmIggCovidSum,438 bpmIgmCovidSum,10 bpmIgmCovidSum,30 bpmIgmCovidSum,58 bpmIgmCovidSum,78 bpmIgmCovidSum,438 igg,8 iggAllSum,10 igm,8 igmAllSum,10 pbm,8 pbm,30 pbm,58 pbm,78 pbm,438 pbmShanghai,10 pbmShanghai,33 pbmShanghai,58 microarry pbmShanghai,68 microbe abEscape,131 abEscape,763 bloomEscMabAvg,135 bloomEscMabAvg,767 bloomEscMax,141 bloomEscMax,773 bloomEscSerumAvg,136 bloomEscSerumAvg,768 bloomEscTop,139 bloomEscTop,771 escape,138 escape,770 mccoy,131 mccoy,763 rappuoli,138 rappuoli,770 microbiol sarsCov2Phylo,964 sarsCov2PhyloPub,1084 variantMuts,1271 microdel.txt.gz microdel,164 microdeletions microdel,1 microdel,2 mid pyle,98 mid-2021 publicAnnots,56 middle multiz7way,705 potPathoIndel,39 strainCons119way,1333 midnight rapid,2 rapid,5 rapid,32 might pond,120 pond,168 problematicSites,68 problematicSites,382 miklem cpgIslandExt,598 cpgIslandExtUnmasked,601 cpgIslandSuper,598 miladi Q0_tracks,1309 Q1_tracks,1311 Q2_tracks,1311 Q3_tracks,1311 galaxyEna,1311 galaxyEnaQ0Ba-1,1307 galaxyEnaQ0Ba-1-1,1307 galaxyEnaQ0Ba-1-1-11,1307 galaxyEnaQ0Ba-1-17,1307 galaxyEnaQ0Ba-2,1307 galaxyEnaQ1Ay-4,1307 galaxyEnaQ1Ay-4-2,1307 galaxyEnaQ1Ay-4-2-2,1307 galaxyEnaQ1Ay-43,1307 galaxyEnaQ1Ba-1-17,1307 galaxyEnaQ2Ay-120,1307 galaxyEnaQ2Ay-122,1307 galaxyEnaQ2Ay-4,1307 galaxyEnaQ2Ay-5,1307 galaxyEnaQ2Ay-6,1307 galaxyEnaQ3Ay-4,1307 galaxyEnaQ3Ay-5,1307 galaxyEnaQ3Ay-9,1307 galaxyEnaQ3B-1-1-7,1307 galaxyEnaQ3B-1-617-2,1307 miller multiz7way,838 multiz7way,1132 multiz7way,1216 multiz7way,1259 primers,386 strainCons119way,2216 strainCons119way,2510 strainCons119way,2594 strainCons119way,2637 strainCons44way,1811 strainCons44way,2105 strainCons44way,2189 strainCons44way,2232 million recomb,30 min kimNp,75 microdel,284 sarsCov2PhyloMinAf001,1 sarsCov2PhyloMinAf01,1 sarsCov2PhyloPubAllFull,2 sarsCov2PhyloPubAllMinAf001,1 sarsCov2PhyloPubAllMinAf01,1 mincover primers,310 minexonintronprob augustusGene,135 minh nextstrainSamples,1060 minimap2 kimIvtCov,164 variantMuts,901 variantMuts,909 variantMuts,1449 minimum nextstrainParsimony,107 pdb,117 pyle,133 sarsCov2Phylo,790 sarsCov2PhyloPub,833 sarsCov2PhyloPub,843 mining microdel,301 minmeanexonintronprob augustusGene,137 minmei multiz7way,830 strainCons119way,2208 strainCons44way,1803 minneartopsize primers,308 minscore multiz7way,671 primers,297 strainCons119way,1020 strainCons44way,968 vaccines,275 minus strainCons119way,2116 strainCons44way,1711 mirarab sarsCov2Phylo,1148 sarsCov2PhyloPub,1281 mirna strainCons119way,297 strainCons44way,245 mishra variantMuts,1326 mismatch cas13Crispr,104 cas13Crispr,294 mismatches cas13Crispr,65 cas13Crispr,140 cas13Crispr,262 cas13Crispr,348 missense PhyloCSF_smooth,57 PhyloCSFpower,72 missing sarsCov2Phylo,765 strainCons119way,398 strainCons44way,346 mist gordon2,112 gordon2,116 gordon2,155 gordon2,242 mixture PhyloCSF_smooth,537 PhyloCSFpower,552 mizrahi Calu3_07hpi,348 ORFs,346 Vero6_05hpi,348 Vero6_24hpi,348 weizmanOrfs,354 mj Starr_Bloom,251 Starr_Bloom_bind,245 multiz7way,1012 strainCons119way,2390 strainCons44way,1985 mk211374v1 strainCons44way,1232 mk211375v1 strainCons44way,1229 mk211376v1 strainCons44way,1219 mk211377v1 strainCons44way,1218 mk211378v1 strainCons44way,1220 mk_counts windowmaskerSdust,59 ml pbmShanghai,505 mn sarsCov2Phylo,1122 sarsCov2PhyloPub,1255 mn908947.3 sarsCov2Phylo,598 sarsCov2PhyloPub,625 mn938384v1 strainCons119way,1573 mn975262v1 strainCons119way,1575 mn985325v1 strainCons119way,1572 mn988668v1 strainCons119way,1535 mn988713v1 strainCons119way,1591 mn994467v1 strainCons119way,1588 mn994468v1 strainCons119way,1551 mn996527v1 strainCons119way,1560 mn996528v1 strainCons119way,1533 mn996529v1 strainCons119way,1557 mn996530v1 strainCons119way,1537 mn996531v1 strainCons119way,1556 mn996532v1 strainCons44way,1203 mn997409v1 strainCons119way,1574 mode IgG_Z-score-_COVID-19_patients,101 IgG_Z-score-_COVID-19_patients,125 IgM_Z-score-_COVID-19_patients,101 IgM_Z-score-_COVID-19_patients,125 Q0_tracks,553 Q1_tracks,555 Q2_tracks,555 Q3_tracks,555 abEscape,405 bloomEscMabAvg,409 bloomEscMax,415 bloomEscSerumAvg,410 bloomEscTop,413 bpmIggCovidSum,110 bpmIggCovidSum,134 bpmIgmCovidSum,110 bpmIgmCovidSum,134 escape,412 galaxyEna,555 galaxyEnaQ0Ba-1,551 galaxyEnaQ0Ba-1-1,551 galaxyEnaQ0Ba-1-1-11,551 galaxyEnaQ0Ba-1-17,551 galaxyEnaQ0Ba-2,551 galaxyEnaQ1Ay-4,551 galaxyEnaQ1Ay-4-2,551 galaxyEnaQ1Ay-4-2-2,551 galaxyEnaQ1Ay-43,551 galaxyEnaQ1Ba-1-17,551 galaxyEnaQ2Ay-120,551 galaxyEnaQ2Ay-122,551 galaxyEnaQ2Ay-4,551 galaxyEnaQ2Ay-5,551 galaxyEnaQ2Ay-6,551 galaxyEnaQ3Ay-4,551 galaxyEnaQ3Ay-5,551 galaxyEnaQ3Ay-9,551 galaxyEnaQ3B-1-1-7,551 galaxyEnaQ3B-1-617-2,551 gold,68 mccoy,405 multiz7way,114 multiz7way,121 multiz7way,129 multiz7way,151 multiz7way,419 nextstrainSamples,307 nextstrainSamples,325 pbm,110 pbm,134 pbmShanghai,167 pbmShanghai,191 pbmShanghai,217 rapid,187 rappuoli,412 recomb,47 sarsCov2Phylo,312 sarsCov2Phylo,330 sarsCov2PhyloPub,319 sarsCov2PhyloPub,369 strainCons119way,463 strainCons119way,470 strainCons119way,478 strainCons119way,500 strainCons119way,759 strainCons119way,2062 strainCons119way,2184 strainCons44way,411 strainCons44way,418 strainCons44way,426 strainCons44way,448 strainCons44way,707 strainCons44way,1657 strainCons44way,1779 swift,124 varskip,44 model PhyloCSF_smooth,437 PhyloCSF_smooth,538 PhyloCSFpower,452 PhyloCSFpower,553 augustusGene,121 augustusGene,326 genscan,140 multiz7way,989 multiz7way,1107 recomb,259 rosettaMhc,91 strainCons119way,1670 strainCons119way,1683 strainCons119way,1710 strainCons119way,1725 strainCons119way,1762 strainCons119way,1781 strainCons119way,1800 strainCons119way,1894 strainCons119way,1924 strainCons119way,2115 strainCons119way,2123 strainCons119way,2367 strainCons119way,2485 strainCons44way,1265 strainCons44way,1278 strainCons44way,1305 strainCons44way,1320 strainCons44way,1357 strainCons44way,1376 strainCons44way,1395 strainCons44way,1489 strainCons44way,1519 strainCons44way,1710 strainCons44way,1718 strainCons44way,1962 strainCons44way,2080 model-based strainCons119way,176 strainCons44way,124 modeled rosettaMhc,292 modeling genscan,182 rosettaMhc,55 models Calu3_07hpi,46 ORFs,44 PhyloCSF_smooth,108 PhyloCSF_smooth,471 PhyloCSF_smooth,492 PhyloCSFpower,123 PhyloCSFpower,486 PhyloCSFpower,507 Vero6_05hpi,46 Vero6_24hpi,46 augustusGene,49 augustusGene,65 augustusGene,97 augustusGene,145 augustusGene,178 genscan,158 multiz7way,1086 rfam,53 rosettaMhc,78 rosettaMhc,111 rosettaMhc,132 rosettaMhc,186 rosettaMhc,313 strainCons119way,2464 strainCons44way,2059 weizmanOrfs,52 moderately strainCons119way,1948 strainCons44way,1543 moderna vaccines,8 vaccines,58 vaccines,221 modernamrna1273 vaccines,291 modes multiz7way,451 sarsCov2PhyloPub,341 strainCons119way,801 strainCons44way,749 varskip,55 modif kimIvtCov,150 kimRnaMod,3 modification cpgIslandExt,591 cpgIslandExtUnmasked,594 cpgIslandSuper,591 treangen,267 modifications kimIvtCov,68 kimRnaMod,6 kimRnaMod,57 unipCov2Chain,199 unipCov2Chain,383 unipCov2DisulfBond,195 unipCov2DisulfBond,379 unipCov2Domain,194 unipCov2Domain,378 unipCov2LocCytopl,194 unipCov2LocCytopl,378 unipCov2LocExtra,194 unipCov2LocExtra,378 unipCov2LocSignal,195 unipCov2LocSignal,379 unipCov2LocTransMemb,195 unipCov2LocTransMemb,379 unipCov2Modif,198 unipCov2Modif,382 unipCov2Mut,195 unipCov2Mut,379 unipCov2Other,195 unipCov2Other,379 unipCov2Repeat,193 unipCov2Repeat,377 unipCov2Struct,197 unipCov2Struct,381 modified gordon2,223 kimIvtCov,151 kimNp,71 kimRnaMod,88 kimRnaMod,104 strainCons119way,1774 strainCons44way,1369 treangen,223 unipCov2Chain,202 unipCov2DisulfBond,198 unipCov2Domain,197 unipCov2LocCytopl,197 unipCov2LocExtra,197 unipCov2LocSignal,198 unipCov2LocTransMemb,198 unipCov2Modif,201 unipCov2Mut,198 unipCov2Other,198 unipCov2Repeat,196 unipCov2Struct,200 modsnp unipCov2AliSwissprot,486 unipCov2Chain,715 unipCov2DisulfBond,711 unipCov2Domain,710 unipCov2Interest,369 unipCov2LocCytopl,710 unipCov2LocExtra,710 unipCov2LocSignal,711 unipCov2LocTransMemb,711 unipCov2Modif,714 unipCov2Mut,711 unipCov2Other,711 unipCov2Repeat,709 unipCov2Struct,713 moiety-binding unipCov2Chain,206 unipCov2DisulfBond,202 unipCov2Domain,201 unipCov2LocCytopl,201 unipCov2LocExtra,201 unipCov2LocSignal,202 unipCov2LocTransMemb,202 unipCov2Modif,205 unipCov2Mut,202 unipCov2Other,202 unipCov2Repeat,200 unipCov2Struct,204 mol cpgIslandExt,614 cpgIslandExtUnmasked,617 cpgIslandSuper,614 genscan,221 multiz7way,999 nextstrainSamples,1073 pbmShanghai,16 pbmShanghai,529 pond,291 sarsCov2Phylo,1037 sarsCov2PhyloPub,1157 strainCons119way,2377 strainCons44way,1972 molecular genscan,199 multiz7way,1094 nextstrainClade,38 nextstrainSamples,81 strainCons119way,2472 strainCons44way,2067 molecules cd8escape,38 cd8escape,80 momoh multiz7way,945 strainCons119way,2323 strainCons44way,1918 monego abEscape,873 bloomEscMabAvg,877 bloomEscMax,883 bloomEscSerumAvg,878 bloomEscTop,881 escape,880 mccoy,873 rappuoli,880 monitor epitopes,193 monitoring Q0_tracks,1346 Q1_tracks,1348 Q2_tracks,1348 Q3_tracks,1348 galaxyEna,1348 galaxyEnaQ0Ba-1,1344 galaxyEnaQ0Ba-1-1,1344 galaxyEnaQ0Ba-1-1-11,1344 galaxyEnaQ0Ba-1-17,1344 galaxyEnaQ0Ba-2,1344 galaxyEnaQ1Ay-4,1344 galaxyEnaQ1Ay-4-2,1344 galaxyEnaQ1Ay-4-2-2,1344 galaxyEnaQ1Ay-43,1344 galaxyEnaQ1Ba-1-17,1344 galaxyEnaQ2Ay-120,1344 galaxyEnaQ2Ay-122,1344 galaxyEnaQ2Ay-4,1344 galaxyEnaQ2Ay-5,1344 galaxyEnaQ2Ay-6,1344 galaxyEnaQ3Ay-4,1344 galaxyEnaQ3Ay-5,1344 galaxyEnaQ3Ay-9,1344 galaxyEnaQ3B-1-1-7,1344 galaxyEnaQ3B-1-617-2,1344 variantMuts,14 variantMuts,152 variantMuts,1076 monoclonal abEscape,7 abEscape,32 abEscape,122 abEscape,139 abEscape,164 abEscape,219 abEscape,263 abEscape,415 abEscape,818 bloomEscMabAvg,8 bloomEscMabAvg,36 bloomEscMabAvg,126 bloomEscMabAvg,143 bloomEscMabAvg,168 bloomEscMabAvg,223 bloomEscMabAvg,267 bloomEscMabAvg,419 bloomEscMabAvg,822 bloomEscMax,42 bloomEscMax,132 bloomEscMax,149 bloomEscMax,174 bloomEscMax,229 bloomEscMax,273 bloomEscMax,425 bloomEscMax,828 bloomEscSerumAvg,37 bloomEscSerumAvg,127 bloomEscSerumAvg,144 bloomEscSerumAvg,169 bloomEscSerumAvg,224 bloomEscSerumAvg,268 bloomEscSerumAvg,420 bloomEscSerumAvg,823 bloomEscTop,40 bloomEscTop,130 bloomEscTop,147 bloomEscTop,172 bloomEscTop,227 bloomEscTop,271 bloomEscTop,423 bloomEscTop,826 escape,14 escape,39 escape,129 escape,146 escape,171 escape,226 escape,270 escape,422 escape,825 mccoy,32 mccoy,122 mccoy,139 mccoy,164 mccoy,219 mccoy,263 mccoy,415 mccoy,818 rappuoli,39 rappuoli,129 rappuoli,146 rappuoli,171 rappuoli,226 rappuoli,270 rappuoli,422 rappuoli,825 monotonic strainCons119way,2147 strainCons44way,1742 monta cd8escape,193 months Q0_tracks,320 Q1_tracks,322 Q2_tracks,322 Q3_tracks,322 galaxyEna,322 galaxyEnaQ0Ba-1,318 galaxyEnaQ0Ba-1-1,318 galaxyEnaQ0Ba-1-1-11,318 galaxyEnaQ0Ba-1-17,318 galaxyEnaQ0Ba-2,318 galaxyEnaQ1Ay-4,318 galaxyEnaQ1Ay-4-2,318 galaxyEnaQ1Ay-4-2-2,318 galaxyEnaQ1Ay-43,318 galaxyEnaQ1Ba-1-17,318 galaxyEnaQ2Ay-120,318 galaxyEnaQ2Ay-122,318 galaxyEnaQ2Ay-4,318 galaxyEnaQ2Ay-5,318 galaxyEnaQ2Ay-6,318 galaxyEnaQ3Ay-4,318 galaxyEnaQ3Ay-5,318 galaxyEnaQ3Ay-9,318 galaxyEnaQ3B-1-1-7,318 galaxyEnaQ3B-1-617-2,318 more Calu3_07hpi,295 Calu3_07hpi,343 IgG_Z-score-_COVID-19_patients,399 IgM_Z-score-_COVID-19_patients,399 ORFs,293 ORFs,341 PhyloCSF_smooth,67 PhyloCSF_smooth,114 PhyloCSF_smooth,668 PhyloCSFpower,82 PhyloCSFpower,129 Q0_tracks,264 Q0_tracks,1271 Q1_tracks,266 Q1_tracks,1273 Q2_tracks,266 Q2_tracks,1273 Q3_tracks,266 Q3_tracks,1273 Starr_Bloom,235 Starr_Bloom_bind,229 Vero6_05hpi,295 Vero6_05hpi,343 Vero6_24hpi,295 Vero6_24hpi,343 abEscape,687 addgene,36 addgene,57 addgene,92 artic,181 articV4,181 articV4_1,194 augustusGene,35 bloomEscMabAvg,691 bloomEscMax,697 bloomEscSerumAvg,692 bloomEscTop,695 bpmIggCovidSum,408 bpmIgmCovidSum,408 cas13Crispr,466 cd8escape,174 contacts,394 cpgIslandExt,541 cpgIslandExtUnmasked,544 cpgIslandSuper,541 escape,694 galaxyEna,266 galaxyEna,1273 galaxyEnaQ0Ba-1,262 galaxyEnaQ0Ba-1,1269 galaxyEnaQ0Ba-1-1,262 galaxyEnaQ0Ba-1-1,1269 galaxyEnaQ0Ba-1-1-11,262 galaxyEnaQ0Ba-1-1-11,1269 galaxyEnaQ0Ba-1-17,262 galaxyEnaQ0Ba-1-17,1269 galaxyEnaQ0Ba-2,262 galaxyEnaQ0Ba-2,1269 galaxyEnaQ1Ay-4,262 galaxyEnaQ1Ay-4,1269 galaxyEnaQ1Ay-4-2,262 galaxyEnaQ1Ay-4-2,1269 galaxyEnaQ1Ay-4-2-2,262 galaxyEnaQ1Ay-4-2-2,1269 galaxyEnaQ1Ay-43,262 galaxyEnaQ1Ay-43,1269 galaxyEnaQ1Ba-1-17,262 galaxyEnaQ1Ba-1-17,1269 galaxyEnaQ2Ay-120,262 galaxyEnaQ2Ay-120,1269 galaxyEnaQ2Ay-122,262 galaxyEnaQ2Ay-122,1269 galaxyEnaQ2Ay-4,262 galaxyEnaQ2Ay-4,1269 galaxyEnaQ2Ay-5,262 galaxyEnaQ2Ay-5,1269 galaxyEnaQ2Ay-6,262 galaxyEnaQ2Ay-6,1269 galaxyEnaQ3Ay-4,262 galaxyEnaQ3Ay-4,1269 galaxyEnaQ3Ay-5,262 galaxyEnaQ3Ay-5,1269 galaxyEnaQ3Ay-9,262 galaxyEnaQ3Ay-9,1269 galaxyEnaQ3B-1-1-7,262 galaxyEnaQ3B-1-1-7,1269 galaxyEnaQ3B-1-617-2,262 galaxyEnaQ3B-1-617-2,1269 genscan,50 genscan,125 genscan,163 icshape,178 kimRnaMod,228 kimTranscripts,446 mccoy,687 microdel,185 ncbiGeneBGP,161 ncbiProducts,177 nextstrainClade,77 nextstrainFreq,108 nextstrainFreq,266 nextstrainSamples,125 nextstrainSamples,190 nextstrainSamples,256 nextstrainSamples,265 nextstrainSamples,434 pbm,408 pbmShanghai,491 phyloGenes,443 poranHla1,76 poranHla1,256 poranHla2,76 poranHla2,256 primers,124 primers,270 problematicSites,384 publicAnnots,100 rapid,202 rapid,335 rappuoli,694 resist,138 resistPred,84 resistPred,230 rfam,175 rosettaMhc,121 sarsCov2Phylo,68 sarsCov2Phylo,470 sarsCov2PhyloPub,82 sarsCov2PhyloPub,499 simpleRepeat,57 spikeMuts,60 spikeMuts,88 spikeMuts,353 strainCons119way,239 strainCons119way,275 strainCons119way,421 strainCons119way,1956 strainCons44way,187 strainCons44way,223 strainCons44way,369 strainCons44way,1551 swift,140 swift,264 targets,119 targets,126 transcriptome,452 treangen,225 unipCov2AliSwissprot,124 unipCov2AliSwissprot,398 unipCov2Chain,309 unipCov2Chain,628 unipCov2DisulfBond,305 unipCov2DisulfBond,624 unipCov2Domain,304 unipCov2Domain,623 unipCov2LocCytopl,304 unipCov2LocCytopl,623 unipCov2LocExtra,304 unipCov2LocExtra,623 unipCov2LocSignal,305 unipCov2LocSignal,624 unipCov2LocTransMemb,305 unipCov2LocTransMemb,624 unipCov2Modif,308 unipCov2Modif,627 unipCov2Mut,305 unipCov2Mut,624 unipCov2Other,305 unipCov2Other,624 unipCov2Repeat,303 unipCov2Repeat,622 unipCov2Struct,307 unipCov2Struct,626 variantMuts,19 varskip,47 varskip,187 weizmanOrfs,301 weizmanOrfs,349 morgenstern Calu3_07hpi,354 ORFs,352 Vero6_05hpi,354 Vero6_24hpi,354 weizmanOrfs,360 morgulis windowmaskerSdust,90 most PhyloCSF_smooth,148 PhyloCSFpower,163 Q0_tracks,9 Q0_tracks,344 Q0_tracks,370 Q0_tracks,1064 Q1_tracks,10 Q1_tracks,346 Q1_tracks,372 Q1_tracks,1066 Q2_tracks,10 Q2_tracks,346 Q2_tracks,372 Q2_tracks,1066 Q3_tracks,10 Q3_tracks,346 Q3_tracks,372 Q3_tracks,1066 abEscape,34 augustusGene,93 augustusGene,110 bloomEscMabAvg,38 bloomEscMax,44 bloomEscSerumAvg,39 bloomEscTop,42 crisprDet,36 escape,41 galaxyEna,346 galaxyEna,372 galaxyEna,1066 galaxyEnaQ0Ba-1,342 galaxyEnaQ0Ba-1,368 galaxyEnaQ0Ba-1,1062 galaxyEnaQ0Ba-1-1,342 galaxyEnaQ0Ba-1-1,368 galaxyEnaQ0Ba-1-1,1062 galaxyEnaQ0Ba-1-1-11,342 galaxyEnaQ0Ba-1-1-11,368 galaxyEnaQ0Ba-1-1-11,1062 galaxyEnaQ0Ba-1-17,342 galaxyEnaQ0Ba-1-17,368 galaxyEnaQ0Ba-1-17,1062 galaxyEnaQ0Ba-2,342 galaxyEnaQ0Ba-2,368 galaxyEnaQ0Ba-2,1062 galaxyEnaQ1Ay-4,342 galaxyEnaQ1Ay-4,368 galaxyEnaQ1Ay-4,1062 galaxyEnaQ1Ay-4-2,342 galaxyEnaQ1Ay-4-2,368 galaxyEnaQ1Ay-4-2,1062 galaxyEnaQ1Ay-4-2-2,342 galaxyEnaQ1Ay-4-2-2,368 galaxyEnaQ1Ay-4-2-2,1062 galaxyEnaQ1Ay-43,342 galaxyEnaQ1Ay-43,368 galaxyEnaQ1Ay-43,1062 galaxyEnaQ1Ba-1-17,342 galaxyEnaQ1Ba-1-17,368 galaxyEnaQ1Ba-1-17,1062 galaxyEnaQ2Ay-120,342 galaxyEnaQ2Ay-120,368 galaxyEnaQ2Ay-120,1062 galaxyEnaQ2Ay-122,342 galaxyEnaQ2Ay-122,368 galaxyEnaQ2Ay-122,1062 galaxyEnaQ2Ay-4,342 galaxyEnaQ2Ay-4,368 galaxyEnaQ2Ay-4,1062 galaxyEnaQ2Ay-5,342 galaxyEnaQ2Ay-5,368 galaxyEnaQ2Ay-5,1062 galaxyEnaQ2Ay-6,342 galaxyEnaQ2Ay-6,368 galaxyEnaQ2Ay-6,1062 galaxyEnaQ3Ay-4,342 galaxyEnaQ3Ay-4,368 galaxyEnaQ3Ay-4,1062 galaxyEnaQ3Ay-5,342 galaxyEnaQ3Ay-5,368 galaxyEnaQ3Ay-5,1062 galaxyEnaQ3Ay-9,342 galaxyEnaQ3Ay-9,368 galaxyEnaQ3Ay-9,1062 galaxyEnaQ3B-1-1-7,342 galaxyEnaQ3B-1-1-7,368 galaxyEnaQ3B-1-1-7,1062 galaxyEnaQ3B-1-617-2,342 galaxyEnaQ3B-1-617-2,368 galaxyEnaQ3B-1-617-2,1062 mccoy,34 nextstrainSamples,437 pond,126 potPathoIndel,115 potPathoIndel,185 primers,60 problematicSites,136 rappuoli,41 sarsCov2Phylo,473 sarsCov2PhyloPub,502 most-conserved strainCons119way,2076 strainCons44way,1671 motif transcriptome,200 motifs pyle,300 unipCov2Chain,247 unipCov2DisulfBond,243 unipCov2Domain,242 unipCov2LocCytopl,242 unipCov2LocExtra,242 unipCov2LocSignal,243 unipCov2LocTransMemb,243 unipCov2Modif,246 unipCov2Mut,243 unipCov2Other,243 unipCov2Repeat,241 unipCov2Struct,245 mouse multiz7way,1145 poranHla1,124 poranHla2,124 resist,75 strainCons119way,2523 strainCons44way,2118 unipCov2AliSwissprot,221 mouse-over abEscape,521 abEscape,556 bloomEscMabAvg,525 bloomEscMabAvg,560 bloomEscMax,531 bloomEscMax,566 bloomEscSerumAvg,526 bloomEscSerumAvg,561 bloomEscTop,529 bloomEscTop,564 escape,528 escape,563 mccoy,521 mccoy,556 rappuoli,528 rappuoli,563 resistPred,146 unipCov2AliSwissprot,126 unipCov2AliSwissprot,139 unipCov2Chain,332 unipCov2Chain,345 unipCov2DisulfBond,328 unipCov2DisulfBond,341 unipCov2Domain,327 unipCov2Domain,340 unipCov2Interest,69 unipCov2LocCytopl,327 unipCov2LocCytopl,340 unipCov2LocExtra,327 unipCov2LocExtra,340 unipCov2LocSignal,328 unipCov2LocSignal,341 unipCov2LocTransMemb,328 unipCov2LocTransMemb,341 unipCov2Modif,331 unipCov2Modif,344 unipCov2Mut,328 unipCov2Mut,341 unipCov2Other,328 unipCov2Other,341 unipCov2Repeat,326 unipCov2Repeat,339 unipCov2Struct,330 unipCov2Struct,343 mousing nextstrainSamples,475 poranHla1,94 poranHla2,94 sarsCov2Phylo,505 sarsCov2PhyloPub,534 mp789 strainCons119way,1287 mrna Entropy,15 SHAPE,11 cas13Crispr,136 icshape,7 icshapeInvitro,5 icshapeInvivo,5 kimTranscripts,87 kimTranscripts,127 mRNA-seq_24hr_1,2 mRNA-seq_24hr_1,6 mRNA-seq_24hr_2,2 mRNA-seq_24hr_2,6 mRNA-seq_5hr_1,2 mRNA-seq_5hr_1,6 mRNA-seq_5hr_2,2 mRNA-seq_5hr_2,6 mRNA-seq_7hr_1,2 mRNA-seq_7hr_1,6 mRNA-seq_7hr_2,2 mRNA-seq_7hr_2,6 mRNAs,5 mRNAs,11 pyle,11 rfam,4 rnaStructRangan,8 transcriptome,79 transcriptome,119 transcriptome,162 transcriptome,170 transcriptome,214 vaccines,20 vaccines,171 vaccines,189 vaccines,519 mrna-1273 vaccines,9 vaccines,59 vaccines,222 vaccines,525 mrnas kimTranscripts,42 kimTranscripts,96 kimTranscripts,112 transcriptome,34 transcriptome,88 transcriptome,104 transcriptome,284 ms vaccines,195 msa nextstrainSamples,849 msa_0925.fasta nextstrainSamples,879 msa_0925.sites.vcf nextstrainSamples,880 msa_date nextstrainSamples,769 nextstrainSamples,801 msa_view multiz7way,851 strainCons119way,1742 strainCons119way,2229 strainCons44way,1337 strainCons44way,1824 mt007544v1 strainCons119way,1580 mt019529v1 strainCons119way,1564 mt019530v1 strainCons119way,1546 mt019531v1 strainCons119way,1544 mt019532v1 strainCons119way,1534 mt019533v1 strainCons119way,1542 mt020781v1 strainCons119way,1582 mt027062v1 strainCons119way,1561 mt027064v1 strainCons119way,1550 mt039873v1 strainCons119way,1539 mt039887v1 strainCons119way,1549 mt039888v1 strainCons119way,1584 mt039890v1 strainCons119way,1592 mt044257v1 strainCons119way,1589 mt044258v1 strainCons119way,1558 mt049951v1 strainCons119way,1579 mt066175v1 strainCons119way,1571 mt066176v1 strainCons119way,1553 mt072688v1 strainCons119way,1547 mt093571v1 strainCons119way,1590 mt093631v1 strainCons119way,1548 mt106052v1 strainCons119way,1576 mt106053v1 strainCons119way,1540 mt106054v1 strainCons119way,1587 mt118835v1 strainCons119way,1543 mt123290v1 strainCons119way,1563 mt123291v1 strainCons119way,1585 mt123292v1 strainCons119way,1581 mt123293v1 strainCons119way,1586 mt126808v1 strainCons119way,1566 mt135041v1 strainCons119way,1577 mt135043v1 strainCons119way,1578 mt152824v1 strainCons119way,1583 mu nextstrainFreq21H_Mu,2 nextstrainFreq21H_Mu,5 nextstrainSamples21H_Mu,2 nextstrainSamples21H_Mu,8 variantAaMutsV2_B_1_621,1 variantAaMutsV2_B_1_621,4 variantMuts,643 variantMuts,1062 variantNucMutsV2_B_1_621,1 variantNucMutsV2_B_1_621,4 much PhyloCSF_smooth,269 PhyloCSFpower,284 mudge PhyloCSF_smooth,370 PhyloCSF_smooth,693 PhyloCSF_smooth,732 PhyloCSFpower,385 PhyloCSFpower,659 PhyloCSFpower,698 mujica unipCov2AliSwissprot,427 unipCov2Interest,310 mullen variantMuts,1477 multi-sequence nextstrainSamples,762 multimodal PhyloCSF_smooth,516 PhyloCSFpower,531 multiple Q0_tracks,406 Q1_tracks,408 Q2_tracks,408 Q3_tracks,408 epitopes,252 galaxyEna,408 galaxyEnaQ0Ba-1,404 galaxyEnaQ0Ba-1-1,404 galaxyEnaQ0Ba-1-1-11,404 galaxyEnaQ0Ba-1-17,404 galaxyEnaQ0Ba-2,404 galaxyEnaQ1Ay-4,404 galaxyEnaQ1Ay-4-2,404 galaxyEnaQ1Ay-4-2-2,404 galaxyEnaQ1Ay-43,404 galaxyEnaQ1Ba-1-17,404 galaxyEnaQ2Ay-120,404 galaxyEnaQ2Ay-122,404 galaxyEnaQ2Ay-4,404 galaxyEnaQ2Ay-5,404 galaxyEnaQ2Ay-6,404 galaxyEnaQ3Ay-4,404 galaxyEnaQ3Ay-5,404 galaxyEnaQ3Ay-9,404 galaxyEnaQ3B-1-1-7,404 galaxyEnaQ3B-1-617-2,404 kimTranscripts,129 multiz7way,19 multiz7way,40 multiz7way,394 multiz7way,726 multiz7way,793 multiz7way,1190 nextstrainParsimony,198 nextstrainSamples,374 primers,57 problematicSites,398 problematicSites,431 sarsCov2Phylo,378 sarsCov2Phylo,1026 sarsCov2PhyloPub,407 sarsCov2PhyloPub,1146 strainCons119way,45 strainCons119way,133 strainCons119way,193 strainCons119way,736 strainCons119way,1486 strainCons119way,1665 strainCons119way,1731 strainCons119way,2568 strainCons44way,42 strainCons44way,81 strainCons44way,141 strainCons44way,684 strainCons44way,1156 strainCons44way,1260 strainCons44way,1326 strainCons44way,2163 transcriptome,121 transcriptome,194 unipCov2Chain,47 unipCov2DisulfBond,43 unipCov2Domain,42 unipCov2LocCytopl,42 unipCov2LocExtra,42 unipCov2LocSignal,43 unipCov2LocTransMemb,43 unipCov2Modif,46 unipCov2Mut,43 unipCov2Other,43 unipCov2Repeat,41 unipCov2Struct,45 variantMuts,148 variantMuts,344 variantMuts,360 variantMuts,1387 multipled gordon2,129 gordon2,244 multiplex kimIvtCov,49 swift,30 multiplexed rapid,45 swift,58 multiplication IgG_Z-score-_COVID-19_patients,226 IgG_Z-score-_COVID-19_patients,256 IgM_Z-score-_COVID-19_patients,226 IgM_Z-score-_COVID-19_patients,256 bpmIggCovidSum,235 bpmIggCovidSum,265 bpmIgmCovidSum,235 bpmIgmCovidSum,265 pbm,235 pbm,265 multiz multiz7way,3 multiz7way,45 multiz7way,738 multiz7way,806 multiz7way,828 multiz7way,1166 strainCons119way,4 strainCons119way,26 strainCons119way,138 strainCons119way,1498 strainCons119way,2206 strainCons119way,2544 strainCons119wayViewalign,1 strainCons119wayViewalign,3 strainCons119wayViewphastcons,4 strainCons119wayViewphyloP,4 strainCons44way,4 strainCons44way,23 strainCons44way,86 strainCons44way,1168 strainCons44way,1801 strainCons44way,2139 strainCons44wayViewalign,1 strainCons44wayViewalign,3 strainCons44wayViewphastcons,5 strainCons44wayViewphyloP,4 strainName119way,1 strainName119way,3 strainName44way,3 strainName44way,4 must primers,196 mut Starr_Bloom,2 Starr_Bloom_bind,2 mutagenesis unipCov2Chain,212 unipCov2DisulfBond,208 unipCov2Domain,207 unipCov2LocCytopl,207 unipCov2LocExtra,207 unipCov2LocSignal,208 unipCov2LocTransMemb,208 unipCov2Modif,211 unipCov2Mut,208 unipCov2Other,208 unipCov2Repeat,206 unipCov2Struct,210 mutant Starr_Bloom,42 Starr_Bloom_bind,39 cd8escape,147 strainCons119way,1382 mutants abEscape,176 bloomEscMabAvg,180 bloomEscMax,186 bloomEscSerumAvg,181 bloomEscTop,184 cd8escape,118 escape,183 mccoy,176 rappuoli,183 mutat unipCov2AliSwissprot,500 unipCov2Chain,729 unipCov2DisulfBond,725 unipCov2Domain,724 unipCov2Interest,383 unipCov2LocCytopl,724 unipCov2LocExtra,724 unipCov2LocSignal,725 unipCov2LocTransMemb,725 unipCov2Modif,728 unipCov2Mut,725 unipCov2Other,725 unipCov2Repeat,723 unipCov2Struct,727 mutated Starr_Bloom,115 Starr_Bloom_bind,109 mutation Q0_tracks,204 Q0_tracks,214 Q0_tracks,291 Q0_tracks,364 Q0_tracks,397 Q0_tracks,416 Q0_tracks,426 Q0_tracks,430 Q0_tracks,474 Q0_tracks,523 Q0_tracks,541 Q0_tracks,546 Q0_tracks,562 Q0_tracks,593 Q0_tracks,619 Q0_tracks,671 Q0_tracks,698 Q0_tracks,898 Q1_tracks,206 Q1_tracks,216 Q1_tracks,293 Q1_tracks,366 Q1_tracks,399 Q1_tracks,418 Q1_tracks,428 Q1_tracks,432 Q1_tracks,476 Q1_tracks,525 Q1_tracks,543 Q1_tracks,548 Q1_tracks,564 Q1_tracks,595 Q1_tracks,621 Q1_tracks,673 Q1_tracks,700 Q1_tracks,900 Q2_tracks,206 Q2_tracks,216 Q2_tracks,293 Q2_tracks,366 Q2_tracks,399 Q2_tracks,418 Q2_tracks,428 Q2_tracks,432 Q2_tracks,476 Q2_tracks,525 Q2_tracks,543 Q2_tracks,548 Q2_tracks,564 Q2_tracks,595 Q2_tracks,621 Q2_tracks,673 Q2_tracks,700 Q2_tracks,900 Q3_tracks,206 Q3_tracks,216 Q3_tracks,293 Q3_tracks,366 Q3_tracks,399 Q3_tracks,418 Q3_tracks,428 Q3_tracks,432 Q3_tracks,476 Q3_tracks,525 Q3_tracks,543 Q3_tracks,548 Q3_tracks,564 Q3_tracks,595 Q3_tracks,621 Q3_tracks,673 Q3_tracks,700 Q3_tracks,900 abEscape,550 abEscape,566 bloomEscMabAvg,554 bloomEscMabAvg,570 bloomEscMax,560 bloomEscMax,576 bloomEscSerumAvg,555 bloomEscSerumAvg,571 bloomEscTop,558 bloomEscTop,574 cd8escape,69 escape,19 escape,557 escape,573 galaxyEna,206 galaxyEna,216 galaxyEna,293 galaxyEna,366 galaxyEna,399 galaxyEna,418 galaxyEna,428 galaxyEna,432 galaxyEna,476 galaxyEna,525 galaxyEna,543 galaxyEna,548 galaxyEna,564 galaxyEna,595 galaxyEna,621 galaxyEna,673 galaxyEna,700 galaxyEna,900 galaxyEnaQ0Ba-1,202 galaxyEnaQ0Ba-1,212 galaxyEnaQ0Ba-1,289 galaxyEnaQ0Ba-1,362 galaxyEnaQ0Ba-1,395 galaxyEnaQ0Ba-1,414 galaxyEnaQ0Ba-1,424 galaxyEnaQ0Ba-1,428 galaxyEnaQ0Ba-1,472 galaxyEnaQ0Ba-1,521 galaxyEnaQ0Ba-1,539 galaxyEnaQ0Ba-1,544 galaxyEnaQ0Ba-1,560 galaxyEnaQ0Ba-1,591 galaxyEnaQ0Ba-1,617 galaxyEnaQ0Ba-1,669 galaxyEnaQ0Ba-1,696 galaxyEnaQ0Ba-1,896 galaxyEnaQ0Ba-1-1,202 galaxyEnaQ0Ba-1-1,212 galaxyEnaQ0Ba-1-1,289 galaxyEnaQ0Ba-1-1,362 galaxyEnaQ0Ba-1-1,395 galaxyEnaQ0Ba-1-1,414 galaxyEnaQ0Ba-1-1,424 galaxyEnaQ0Ba-1-1,428 galaxyEnaQ0Ba-1-1,472 galaxyEnaQ0Ba-1-1,521 galaxyEnaQ0Ba-1-1,539 galaxyEnaQ0Ba-1-1,544 galaxyEnaQ0Ba-1-1,560 galaxyEnaQ0Ba-1-1,591 galaxyEnaQ0Ba-1-1,617 galaxyEnaQ0Ba-1-1,669 galaxyEnaQ0Ba-1-1,696 galaxyEnaQ0Ba-1-1,896 galaxyEnaQ0Ba-1-1-11,202 galaxyEnaQ0Ba-1-1-11,212 galaxyEnaQ0Ba-1-1-11,289 galaxyEnaQ0Ba-1-1-11,362 galaxyEnaQ0Ba-1-1-11,395 galaxyEnaQ0Ba-1-1-11,414 galaxyEnaQ0Ba-1-1-11,424 galaxyEnaQ0Ba-1-1-11,428 galaxyEnaQ0Ba-1-1-11,472 galaxyEnaQ0Ba-1-1-11,521 galaxyEnaQ0Ba-1-1-11,539 galaxyEnaQ0Ba-1-1-11,544 galaxyEnaQ0Ba-1-1-11,560 galaxyEnaQ0Ba-1-1-11,591 galaxyEnaQ0Ba-1-1-11,617 galaxyEnaQ0Ba-1-1-11,669 galaxyEnaQ0Ba-1-1-11,696 galaxyEnaQ0Ba-1-1-11,896 galaxyEnaQ0Ba-1-17,202 galaxyEnaQ0Ba-1-17,212 galaxyEnaQ0Ba-1-17,289 galaxyEnaQ0Ba-1-17,362 galaxyEnaQ0Ba-1-17,395 galaxyEnaQ0Ba-1-17,414 galaxyEnaQ0Ba-1-17,424 galaxyEnaQ0Ba-1-17,428 galaxyEnaQ0Ba-1-17,472 galaxyEnaQ0Ba-1-17,521 galaxyEnaQ0Ba-1-17,539 galaxyEnaQ0Ba-1-17,544 galaxyEnaQ0Ba-1-17,560 galaxyEnaQ0Ba-1-17,591 galaxyEnaQ0Ba-1-17,617 galaxyEnaQ0Ba-1-17,669 galaxyEnaQ0Ba-1-17,696 galaxyEnaQ0Ba-1-17,896 galaxyEnaQ0Ba-2,202 galaxyEnaQ0Ba-2,212 galaxyEnaQ0Ba-2,289 galaxyEnaQ0Ba-2,362 galaxyEnaQ0Ba-2,395 galaxyEnaQ0Ba-2,414 galaxyEnaQ0Ba-2,424 galaxyEnaQ0Ba-2,428 galaxyEnaQ0Ba-2,472 galaxyEnaQ0Ba-2,521 galaxyEnaQ0Ba-2,539 galaxyEnaQ0Ba-2,544 galaxyEnaQ0Ba-2,560 galaxyEnaQ0Ba-2,591 galaxyEnaQ0Ba-2,617 galaxyEnaQ0Ba-2,669 galaxyEnaQ0Ba-2,696 galaxyEnaQ0Ba-2,896 galaxyEnaQ1Ay-4,202 galaxyEnaQ1Ay-4,212 galaxyEnaQ1Ay-4,289 galaxyEnaQ1Ay-4,362 galaxyEnaQ1Ay-4,395 galaxyEnaQ1Ay-4,414 galaxyEnaQ1Ay-4,424 galaxyEnaQ1Ay-4,428 galaxyEnaQ1Ay-4,472 galaxyEnaQ1Ay-4,521 galaxyEnaQ1Ay-4,539 galaxyEnaQ1Ay-4,544 galaxyEnaQ1Ay-4,560 galaxyEnaQ1Ay-4,591 galaxyEnaQ1Ay-4,617 galaxyEnaQ1Ay-4,669 galaxyEnaQ1Ay-4,696 galaxyEnaQ1Ay-4,896 galaxyEnaQ1Ay-4-2,202 galaxyEnaQ1Ay-4-2,212 galaxyEnaQ1Ay-4-2,289 galaxyEnaQ1Ay-4-2,362 galaxyEnaQ1Ay-4-2,395 galaxyEnaQ1Ay-4-2,414 galaxyEnaQ1Ay-4-2,424 galaxyEnaQ1Ay-4-2,428 galaxyEnaQ1Ay-4-2,472 galaxyEnaQ1Ay-4-2,521 galaxyEnaQ1Ay-4-2,539 galaxyEnaQ1Ay-4-2,544 galaxyEnaQ1Ay-4-2,560 galaxyEnaQ1Ay-4-2,591 galaxyEnaQ1Ay-4-2,617 galaxyEnaQ1Ay-4-2,669 galaxyEnaQ1Ay-4-2,696 galaxyEnaQ1Ay-4-2,896 galaxyEnaQ1Ay-4-2-2,202 galaxyEnaQ1Ay-4-2-2,212 galaxyEnaQ1Ay-4-2-2,289 galaxyEnaQ1Ay-4-2-2,362 galaxyEnaQ1Ay-4-2-2,395 galaxyEnaQ1Ay-4-2-2,414 galaxyEnaQ1Ay-4-2-2,424 galaxyEnaQ1Ay-4-2-2,428 galaxyEnaQ1Ay-4-2-2,472 galaxyEnaQ1Ay-4-2-2,521 galaxyEnaQ1Ay-4-2-2,539 galaxyEnaQ1Ay-4-2-2,544 galaxyEnaQ1Ay-4-2-2,560 galaxyEnaQ1Ay-4-2-2,591 galaxyEnaQ1Ay-4-2-2,617 galaxyEnaQ1Ay-4-2-2,669 galaxyEnaQ1Ay-4-2-2,696 galaxyEnaQ1Ay-4-2-2,896 galaxyEnaQ1Ay-43,202 galaxyEnaQ1Ay-43,212 galaxyEnaQ1Ay-43,289 galaxyEnaQ1Ay-43,362 galaxyEnaQ1Ay-43,395 galaxyEnaQ1Ay-43,414 galaxyEnaQ1Ay-43,424 galaxyEnaQ1Ay-43,428 galaxyEnaQ1Ay-43,472 galaxyEnaQ1Ay-43,521 galaxyEnaQ1Ay-43,539 galaxyEnaQ1Ay-43,544 galaxyEnaQ1Ay-43,560 galaxyEnaQ1Ay-43,591 galaxyEnaQ1Ay-43,617 galaxyEnaQ1Ay-43,669 galaxyEnaQ1Ay-43,696 galaxyEnaQ1Ay-43,896 galaxyEnaQ1Ba-1-17,202 galaxyEnaQ1Ba-1-17,212 galaxyEnaQ1Ba-1-17,289 galaxyEnaQ1Ba-1-17,362 galaxyEnaQ1Ba-1-17,395 galaxyEnaQ1Ba-1-17,414 galaxyEnaQ1Ba-1-17,424 galaxyEnaQ1Ba-1-17,428 galaxyEnaQ1Ba-1-17,472 galaxyEnaQ1Ba-1-17,521 galaxyEnaQ1Ba-1-17,539 galaxyEnaQ1Ba-1-17,544 galaxyEnaQ1Ba-1-17,560 galaxyEnaQ1Ba-1-17,591 galaxyEnaQ1Ba-1-17,617 galaxyEnaQ1Ba-1-17,669 galaxyEnaQ1Ba-1-17,696 galaxyEnaQ1Ba-1-17,896 galaxyEnaQ2Ay-120,202 galaxyEnaQ2Ay-120,212 galaxyEnaQ2Ay-120,289 galaxyEnaQ2Ay-120,362 galaxyEnaQ2Ay-120,395 galaxyEnaQ2Ay-120,414 galaxyEnaQ2Ay-120,424 galaxyEnaQ2Ay-120,428 galaxyEnaQ2Ay-120,472 galaxyEnaQ2Ay-120,521 galaxyEnaQ2Ay-120,539 galaxyEnaQ2Ay-120,544 galaxyEnaQ2Ay-120,560 galaxyEnaQ2Ay-120,591 galaxyEnaQ2Ay-120,617 galaxyEnaQ2Ay-120,669 galaxyEnaQ2Ay-120,696 galaxyEnaQ2Ay-120,896 galaxyEnaQ2Ay-122,202 galaxyEnaQ2Ay-122,212 galaxyEnaQ2Ay-122,289 galaxyEnaQ2Ay-122,362 galaxyEnaQ2Ay-122,395 galaxyEnaQ2Ay-122,414 galaxyEnaQ2Ay-122,424 galaxyEnaQ2Ay-122,428 galaxyEnaQ2Ay-122,472 galaxyEnaQ2Ay-122,521 galaxyEnaQ2Ay-122,539 galaxyEnaQ2Ay-122,544 galaxyEnaQ2Ay-122,560 galaxyEnaQ2Ay-122,591 galaxyEnaQ2Ay-122,617 galaxyEnaQ2Ay-122,669 galaxyEnaQ2Ay-122,696 galaxyEnaQ2Ay-122,896 galaxyEnaQ2Ay-4,202 galaxyEnaQ2Ay-4,212 galaxyEnaQ2Ay-4,289 galaxyEnaQ2Ay-4,362 galaxyEnaQ2Ay-4,395 galaxyEnaQ2Ay-4,414 galaxyEnaQ2Ay-4,424 galaxyEnaQ2Ay-4,428 galaxyEnaQ2Ay-4,472 galaxyEnaQ2Ay-4,521 galaxyEnaQ2Ay-4,539 galaxyEnaQ2Ay-4,544 galaxyEnaQ2Ay-4,560 galaxyEnaQ2Ay-4,591 galaxyEnaQ2Ay-4,617 galaxyEnaQ2Ay-4,669 galaxyEnaQ2Ay-4,696 galaxyEnaQ2Ay-4,896 galaxyEnaQ2Ay-5,202 galaxyEnaQ2Ay-5,212 galaxyEnaQ2Ay-5,289 galaxyEnaQ2Ay-5,362 galaxyEnaQ2Ay-5,395 galaxyEnaQ2Ay-5,414 galaxyEnaQ2Ay-5,424 galaxyEnaQ2Ay-5,428 galaxyEnaQ2Ay-5,472 galaxyEnaQ2Ay-5,521 galaxyEnaQ2Ay-5,539 galaxyEnaQ2Ay-5,544 galaxyEnaQ2Ay-5,560 galaxyEnaQ2Ay-5,591 galaxyEnaQ2Ay-5,617 galaxyEnaQ2Ay-5,669 galaxyEnaQ2Ay-5,696 galaxyEnaQ2Ay-5,896 galaxyEnaQ2Ay-6,202 galaxyEnaQ2Ay-6,212 galaxyEnaQ2Ay-6,289 galaxyEnaQ2Ay-6,362 galaxyEnaQ2Ay-6,395 galaxyEnaQ2Ay-6,414 galaxyEnaQ2Ay-6,424 galaxyEnaQ2Ay-6,428 galaxyEnaQ2Ay-6,472 galaxyEnaQ2Ay-6,521 galaxyEnaQ2Ay-6,539 galaxyEnaQ2Ay-6,544 galaxyEnaQ2Ay-6,560 galaxyEnaQ2Ay-6,591 galaxyEnaQ2Ay-6,617 galaxyEnaQ2Ay-6,669 galaxyEnaQ2Ay-6,696 galaxyEnaQ2Ay-6,896 galaxyEnaQ3Ay-4,202 galaxyEnaQ3Ay-4,212 galaxyEnaQ3Ay-4,289 galaxyEnaQ3Ay-4,362 galaxyEnaQ3Ay-4,395 galaxyEnaQ3Ay-4,414 galaxyEnaQ3Ay-4,424 galaxyEnaQ3Ay-4,428 galaxyEnaQ3Ay-4,472 galaxyEnaQ3Ay-4,521 galaxyEnaQ3Ay-4,539 galaxyEnaQ3Ay-4,544 galaxyEnaQ3Ay-4,560 galaxyEnaQ3Ay-4,591 galaxyEnaQ3Ay-4,617 galaxyEnaQ3Ay-4,669 galaxyEnaQ3Ay-4,696 galaxyEnaQ3Ay-4,896 galaxyEnaQ3Ay-5,202 galaxyEnaQ3Ay-5,212 galaxyEnaQ3Ay-5,289 galaxyEnaQ3Ay-5,362 galaxyEnaQ3Ay-5,395 galaxyEnaQ3Ay-5,414 galaxyEnaQ3Ay-5,424 galaxyEnaQ3Ay-5,428 galaxyEnaQ3Ay-5,472 galaxyEnaQ3Ay-5,521 galaxyEnaQ3Ay-5,539 galaxyEnaQ3Ay-5,544 galaxyEnaQ3Ay-5,560 galaxyEnaQ3Ay-5,591 galaxyEnaQ3Ay-5,617 galaxyEnaQ3Ay-5,669 galaxyEnaQ3Ay-5,696 galaxyEnaQ3Ay-5,896 galaxyEnaQ3Ay-9,202 galaxyEnaQ3Ay-9,212 galaxyEnaQ3Ay-9,289 galaxyEnaQ3Ay-9,362 galaxyEnaQ3Ay-9,395 galaxyEnaQ3Ay-9,414 galaxyEnaQ3Ay-9,424 galaxyEnaQ3Ay-9,428 galaxyEnaQ3Ay-9,472 galaxyEnaQ3Ay-9,521 galaxyEnaQ3Ay-9,539 galaxyEnaQ3Ay-9,544 galaxyEnaQ3Ay-9,560 galaxyEnaQ3Ay-9,591 galaxyEnaQ3Ay-9,617 galaxyEnaQ3Ay-9,669 galaxyEnaQ3Ay-9,696 galaxyEnaQ3Ay-9,896 galaxyEnaQ3B-1-1-7,202 galaxyEnaQ3B-1-1-7,212 galaxyEnaQ3B-1-1-7,289 galaxyEnaQ3B-1-1-7,362 galaxyEnaQ3B-1-1-7,395 galaxyEnaQ3B-1-1-7,414 galaxyEnaQ3B-1-1-7,424 galaxyEnaQ3B-1-1-7,428 galaxyEnaQ3B-1-1-7,472 galaxyEnaQ3B-1-1-7,521 galaxyEnaQ3B-1-1-7,539 galaxyEnaQ3B-1-1-7,544 galaxyEnaQ3B-1-1-7,560 galaxyEnaQ3B-1-1-7,591 galaxyEnaQ3B-1-1-7,617 galaxyEnaQ3B-1-1-7,669 galaxyEnaQ3B-1-1-7,696 galaxyEnaQ3B-1-1-7,896 galaxyEnaQ3B-1-617-2,202 galaxyEnaQ3B-1-617-2,212 galaxyEnaQ3B-1-617-2,289 galaxyEnaQ3B-1-617-2,362 galaxyEnaQ3B-1-617-2,395 galaxyEnaQ3B-1-617-2,414 galaxyEnaQ3B-1-617-2,424 galaxyEnaQ3B-1-617-2,428 galaxyEnaQ3B-1-617-2,472 galaxyEnaQ3B-1-617-2,521 galaxyEnaQ3B-1-617-2,539 galaxyEnaQ3B-1-617-2,544 galaxyEnaQ3B-1-617-2,560 galaxyEnaQ3B-1-617-2,591 galaxyEnaQ3B-1-617-2,617 galaxyEnaQ3B-1-617-2,669 galaxyEnaQ3B-1-617-2,696 galaxyEnaQ3B-1-617-2,896 mccoy,6 mccoy,550 mccoy,566 nextstrainFreq,88 nextstrainParsimony,21 nextstrainParsimony,104 nextstrainParsimony,144 nextstrainParsimony,154 nextstrainParsimony,157 nextstrainParsimony,174 nextstrainParsimony,189 nextstrainParsimony,192 nextstrainParsimony,230 nextstrainSamples,129 nextstrainSamples,156 nextstrainSamples,320 nextstrainSamples,389 nextstrainSamples,426 phyloGenes,599 problematicSites,277 rappuoli,557 rappuoli,573 recomb,269 resistPred,17 resistPred,135 sarsCov2Phylo,105 sarsCov2Phylo,325 sarsCov2Phylo,393 sarsCov2Phylo,462 sarsCov2Phylo,693 sarsCov2PhyloPub,118 sarsCov2PhyloPub,332 sarsCov2PhyloPub,372 sarsCov2PhyloPub,422 sarsCov2PhyloPub,491 sarsCov2PhyloPub,800 spikeMuts,147 spikeMuts,215 spikeMuts,246 spikeMuts,251 spikeMuts,266 variantMuts,93 mutation-annotated recomb,185 mutational Starr_Bloom,7 Starr_Bloom,20 Starr_Bloom,261 Starr_Bloom_bind,7 Starr_Bloom_bind,21 Starr_Bloom_bind,255 abEscape,67 bloomEscMabAvg,71 bloomEscMax,77 bloomEscSerumAvg,72 bloomEscTop,75 escape,74 mccoy,67 pond,280 rappuoli,74 mutations PhyloCSF_smooth,801 PhyloCSFpower,778 Q0_tracks,3 Q0_tracks,279 Q0_tracks,415 Q0_tracks,450 Q0_tracks,461 Q0_tracks,489 Q0_tracks,670 Q0_tracks,715 Q0_tracks,732 Q0_tracks,787 Q0_tracks,1083 Q1_tracks,3 Q1_tracks,281 Q1_tracks,417 Q1_tracks,452 Q1_tracks,463 Q1_tracks,491 Q1_tracks,672 Q1_tracks,717 Q1_tracks,734 Q1_tracks,789 Q1_tracks,1085 Q2_tracks,3 Q2_tracks,281 Q2_tracks,417 Q2_tracks,452 Q2_tracks,463 Q2_tracks,491 Q2_tracks,672 Q2_tracks,717 Q2_tracks,734 Q2_tracks,789 Q2_tracks,1085 Q3_tracks,3 Q3_tracks,281 Q3_tracks,417 Q3_tracks,452 Q3_tracks,463 Q3_tracks,491 Q3_tracks,672 Q3_tracks,717 Q3_tracks,734 Q3_tracks,789 Q3_tracks,1085 Starr_Bloom,63 Starr_Bloom,83 Starr_Bloom_bind,60 Starr_Bloom_bind,77 abEscape,22 abEscape,37 abEscape,77 abEscape,194 abEscape,216 abEscape,324 abEscape,533 abEscape,642 abEscape,707 abEscape,750 abEscape,815 abEscape,845 bloomEscMabAvg,26 bloomEscMabAvg,41 bloomEscMabAvg,81 bloomEscMabAvg,198 bloomEscMabAvg,220 bloomEscMabAvg,328 bloomEscMabAvg,537 bloomEscMabAvg,646 bloomEscMabAvg,711 bloomEscMabAvg,754 bloomEscMabAvg,819 bloomEscMabAvg,849 bloomEscMax,32 bloomEscMax,47 bloomEscMax,87 bloomEscMax,204 bloomEscMax,226 bloomEscMax,334 bloomEscMax,543 bloomEscMax,652 bloomEscMax,717 bloomEscMax,760 bloomEscMax,825 bloomEscMax,855 bloomEscSerumAvg,27 bloomEscSerumAvg,42 bloomEscSerumAvg,82 bloomEscSerumAvg,199 bloomEscSerumAvg,221 bloomEscSerumAvg,329 bloomEscSerumAvg,538 bloomEscSerumAvg,647 bloomEscSerumAvg,712 bloomEscSerumAvg,755 bloomEscSerumAvg,820 bloomEscSerumAvg,850 bloomEscTop,3 bloomEscTop,30 bloomEscTop,45 bloomEscTop,85 bloomEscTop,202 bloomEscTop,224 bloomEscTop,332 bloomEscTop,541 bloomEscTop,650 bloomEscTop,715 bloomEscTop,758 bloomEscTop,823 bloomEscTop,853 cd8escape,8 cd8escape,100 cd8escape,214 escape,7 escape,29 escape,44 escape,84 escape,201 escape,223 escape,331 escape,540 escape,649 escape,714 escape,757 escape,822 escape,852 galaxyEna,3 galaxyEna,8 galaxyEna,281 galaxyEna,417 galaxyEna,452 galaxyEna,463 galaxyEna,491 galaxyEna,672 galaxyEna,717 galaxyEna,734 galaxyEna,789 galaxyEna,1085 galaxyEnaQ0Ba-1,2 galaxyEnaQ0Ba-1,3 galaxyEnaQ0Ba-1,277 galaxyEnaQ0Ba-1,413 galaxyEnaQ0Ba-1,448 galaxyEnaQ0Ba-1,459 galaxyEnaQ0Ba-1,487 galaxyEnaQ0Ba-1,668 galaxyEnaQ0Ba-1,713 galaxyEnaQ0Ba-1,730 galaxyEnaQ0Ba-1,785 galaxyEnaQ0Ba-1,1081 galaxyEnaQ0Ba-1-1,2 galaxyEnaQ0Ba-1-1,3 galaxyEnaQ0Ba-1-1,277 galaxyEnaQ0Ba-1-1,413 galaxyEnaQ0Ba-1-1,448 galaxyEnaQ0Ba-1-1,459 galaxyEnaQ0Ba-1-1,487 galaxyEnaQ0Ba-1-1,668 galaxyEnaQ0Ba-1-1,713 galaxyEnaQ0Ba-1-1,730 galaxyEnaQ0Ba-1-1,785 galaxyEnaQ0Ba-1-1,1081 galaxyEnaQ0Ba-1-1-11,2 galaxyEnaQ0Ba-1-1-11,3 galaxyEnaQ0Ba-1-1-11,277 galaxyEnaQ0Ba-1-1-11,413 galaxyEnaQ0Ba-1-1-11,448 galaxyEnaQ0Ba-1-1-11,459 galaxyEnaQ0Ba-1-1-11,487 galaxyEnaQ0Ba-1-1-11,668 galaxyEnaQ0Ba-1-1-11,713 galaxyEnaQ0Ba-1-1-11,730 galaxyEnaQ0Ba-1-1-11,785 galaxyEnaQ0Ba-1-1-11,1081 galaxyEnaQ0Ba-1-17,2 galaxyEnaQ0Ba-1-17,3 galaxyEnaQ0Ba-1-17,277 galaxyEnaQ0Ba-1-17,413 galaxyEnaQ0Ba-1-17,448 galaxyEnaQ0Ba-1-17,459 galaxyEnaQ0Ba-1-17,487 galaxyEnaQ0Ba-1-17,668 galaxyEnaQ0Ba-1-17,713 galaxyEnaQ0Ba-1-17,730 galaxyEnaQ0Ba-1-17,785 galaxyEnaQ0Ba-1-17,1081 galaxyEnaQ0Ba-2,2 galaxyEnaQ0Ba-2,3 galaxyEnaQ0Ba-2,277 galaxyEnaQ0Ba-2,413 galaxyEnaQ0Ba-2,448 galaxyEnaQ0Ba-2,459 galaxyEnaQ0Ba-2,487 galaxyEnaQ0Ba-2,668 galaxyEnaQ0Ba-2,713 galaxyEnaQ0Ba-2,730 galaxyEnaQ0Ba-2,785 galaxyEnaQ0Ba-2,1081 galaxyEnaQ1Ay-4,2 galaxyEnaQ1Ay-4,3 galaxyEnaQ1Ay-4,277 galaxyEnaQ1Ay-4,413 galaxyEnaQ1Ay-4,448 galaxyEnaQ1Ay-4,459 galaxyEnaQ1Ay-4,487 galaxyEnaQ1Ay-4,668 galaxyEnaQ1Ay-4,713 galaxyEnaQ1Ay-4,730 galaxyEnaQ1Ay-4,785 galaxyEnaQ1Ay-4,1081 galaxyEnaQ1Ay-4-2,2 galaxyEnaQ1Ay-4-2,3 galaxyEnaQ1Ay-4-2,277 galaxyEnaQ1Ay-4-2,413 galaxyEnaQ1Ay-4-2,448 galaxyEnaQ1Ay-4-2,459 galaxyEnaQ1Ay-4-2,487 galaxyEnaQ1Ay-4-2,668 galaxyEnaQ1Ay-4-2,713 galaxyEnaQ1Ay-4-2,730 galaxyEnaQ1Ay-4-2,785 galaxyEnaQ1Ay-4-2,1081 galaxyEnaQ1Ay-4-2-2,2 galaxyEnaQ1Ay-4-2-2,3 galaxyEnaQ1Ay-4-2-2,277 galaxyEnaQ1Ay-4-2-2,413 galaxyEnaQ1Ay-4-2-2,448 galaxyEnaQ1Ay-4-2-2,459 galaxyEnaQ1Ay-4-2-2,487 galaxyEnaQ1Ay-4-2-2,668 galaxyEnaQ1Ay-4-2-2,713 galaxyEnaQ1Ay-4-2-2,730 galaxyEnaQ1Ay-4-2-2,785 galaxyEnaQ1Ay-4-2-2,1081 galaxyEnaQ1Ay-43,2 galaxyEnaQ1Ay-43,3 galaxyEnaQ1Ay-43,277 galaxyEnaQ1Ay-43,413 galaxyEnaQ1Ay-43,448 galaxyEnaQ1Ay-43,459 galaxyEnaQ1Ay-43,487 galaxyEnaQ1Ay-43,668 galaxyEnaQ1Ay-43,713 galaxyEnaQ1Ay-43,730 galaxyEnaQ1Ay-43,785 galaxyEnaQ1Ay-43,1081 galaxyEnaQ1Ba-1-17,2 galaxyEnaQ1Ba-1-17,3 galaxyEnaQ1Ba-1-17,277 galaxyEnaQ1Ba-1-17,413 galaxyEnaQ1Ba-1-17,448 galaxyEnaQ1Ba-1-17,459 galaxyEnaQ1Ba-1-17,487 galaxyEnaQ1Ba-1-17,668 galaxyEnaQ1Ba-1-17,713 galaxyEnaQ1Ba-1-17,730 galaxyEnaQ1Ba-1-17,785 galaxyEnaQ1Ba-1-17,1081 galaxyEnaQ2Ay-120,2 galaxyEnaQ2Ay-120,3 galaxyEnaQ2Ay-120,277 galaxyEnaQ2Ay-120,413 galaxyEnaQ2Ay-120,448 galaxyEnaQ2Ay-120,459 galaxyEnaQ2Ay-120,487 galaxyEnaQ2Ay-120,668 galaxyEnaQ2Ay-120,713 galaxyEnaQ2Ay-120,730 galaxyEnaQ2Ay-120,785 galaxyEnaQ2Ay-120,1081 galaxyEnaQ2Ay-122,2 galaxyEnaQ2Ay-122,3 galaxyEnaQ2Ay-122,277 galaxyEnaQ2Ay-122,413 galaxyEnaQ2Ay-122,448 galaxyEnaQ2Ay-122,459 galaxyEnaQ2Ay-122,487 galaxyEnaQ2Ay-122,668 galaxyEnaQ2Ay-122,713 galaxyEnaQ2Ay-122,730 galaxyEnaQ2Ay-122,785 galaxyEnaQ2Ay-122,1081 galaxyEnaQ2Ay-4,2 galaxyEnaQ2Ay-4,3 galaxyEnaQ2Ay-4,277 galaxyEnaQ2Ay-4,413 galaxyEnaQ2Ay-4,448 galaxyEnaQ2Ay-4,459 galaxyEnaQ2Ay-4,487 galaxyEnaQ2Ay-4,668 galaxyEnaQ2Ay-4,713 galaxyEnaQ2Ay-4,730 galaxyEnaQ2Ay-4,785 galaxyEnaQ2Ay-4,1081 galaxyEnaQ2Ay-5,2 galaxyEnaQ2Ay-5,3 galaxyEnaQ2Ay-5,277 galaxyEnaQ2Ay-5,413 galaxyEnaQ2Ay-5,448 galaxyEnaQ2Ay-5,459 galaxyEnaQ2Ay-5,487 galaxyEnaQ2Ay-5,668 galaxyEnaQ2Ay-5,713 galaxyEnaQ2Ay-5,730 galaxyEnaQ2Ay-5,785 galaxyEnaQ2Ay-5,1081 galaxyEnaQ2Ay-6,2 galaxyEnaQ2Ay-6,3 galaxyEnaQ2Ay-6,277 galaxyEnaQ2Ay-6,413 galaxyEnaQ2Ay-6,448 galaxyEnaQ2Ay-6,459 galaxyEnaQ2Ay-6,487 galaxyEnaQ2Ay-6,668 galaxyEnaQ2Ay-6,713 galaxyEnaQ2Ay-6,730 galaxyEnaQ2Ay-6,785 galaxyEnaQ2Ay-6,1081 galaxyEnaQ3Ay-4,2 galaxyEnaQ3Ay-4,3 galaxyEnaQ3Ay-4,277 galaxyEnaQ3Ay-4,413 galaxyEnaQ3Ay-4,448 galaxyEnaQ3Ay-4,459 galaxyEnaQ3Ay-4,487 galaxyEnaQ3Ay-4,668 galaxyEnaQ3Ay-4,713 galaxyEnaQ3Ay-4,730 galaxyEnaQ3Ay-4,785 galaxyEnaQ3Ay-4,1081 galaxyEnaQ3Ay-5,2 galaxyEnaQ3Ay-5,3 galaxyEnaQ3Ay-5,277 galaxyEnaQ3Ay-5,413 galaxyEnaQ3Ay-5,448 galaxyEnaQ3Ay-5,459 galaxyEnaQ3Ay-5,487 galaxyEnaQ3Ay-5,668 galaxyEnaQ3Ay-5,713 galaxyEnaQ3Ay-5,730 galaxyEnaQ3Ay-5,785 galaxyEnaQ3Ay-5,1081 galaxyEnaQ3Ay-9,2 galaxyEnaQ3Ay-9,3 galaxyEnaQ3Ay-9,277 galaxyEnaQ3Ay-9,413 galaxyEnaQ3Ay-9,448 galaxyEnaQ3Ay-9,459 galaxyEnaQ3Ay-9,487 galaxyEnaQ3Ay-9,668 galaxyEnaQ3Ay-9,713 galaxyEnaQ3Ay-9,730 galaxyEnaQ3Ay-9,785 galaxyEnaQ3Ay-9,1081 galaxyEnaQ3B-1-1-7,2 galaxyEnaQ3B-1-1-7,3 galaxyEnaQ3B-1-1-7,277 galaxyEnaQ3B-1-1-7,413 galaxyEnaQ3B-1-1-7,448 galaxyEnaQ3B-1-1-7,459 galaxyEnaQ3B-1-1-7,487 galaxyEnaQ3B-1-1-7,668 galaxyEnaQ3B-1-1-7,713 galaxyEnaQ3B-1-1-7,730 galaxyEnaQ3B-1-1-7,785 galaxyEnaQ3B-1-1-7,1081 galaxyEnaQ3B-1-617-2,2 galaxyEnaQ3B-1-617-2,3 galaxyEnaQ3B-1-617-2,277 galaxyEnaQ3B-1-617-2,413 galaxyEnaQ3B-1-617-2,448 galaxyEnaQ3B-1-617-2,459 galaxyEnaQ3B-1-617-2,487 galaxyEnaQ3B-1-617-2,668 galaxyEnaQ3B-1-617-2,713 galaxyEnaQ3B-1-617-2,730 galaxyEnaQ3B-1-617-2,785 galaxyEnaQ3B-1-617-2,1081 mccoy,22 mccoy,37 mccoy,77 mccoy,194 mccoy,216 mccoy,324 mccoy,533 mccoy,642 mccoy,707 mccoy,750 mccoy,815 mccoy,845 nextstrainClade,19 nextstrainClade,48 nextstrainClade,100 nextstrainClade,104 nextstrainClade,113 nextstrainClade,135 nextstrainFreq,4 nextstrainFreq,16 nextstrainFreq,48 nextstrainFreq,104 nextstrainFreq,113 nextstrainFreqViewAll,4 nextstrainFreqViewNewClades,4 nextstrainGene,17 nextstrainGene,44 nextstrainGene,56 nextstrainGene,80 nextstrainGene,82 nextstrainParsimony,7 nextstrainParsimony,65 nextstrainParsimony,207 nextstrainParsimony,244 nextstrainParsimony,270 nextstrainParsimony,335 nextstrainSamples,2 nextstrainSamples,10 nextstrainSamples,19 nextstrainSamples,59 nextstrainSamples,71 nextstrainSamples,95 nextstrainSamples,184 nextstrainSamples,223 nextstrainSamples,241 nextstrainSamples,271 nextstrainSamples,279 nextstrainSamples,281 nextstrainSamples,334 nextstrainSamples,562 nextstrainSamples,664 nextstrainSamples,701 nextstrainSamples19A,2 nextstrainSamples19A,3 nextstrainSamples19B,2 nextstrainSamples19B,3 nextstrainSamples20A,2 nextstrainSamples20A,3 nextstrainSamples20B,2 nextstrainSamples20B,3 nextstrainSamples20C,2 nextstrainSamples20C,3 nextstrainSamples20D,2 nextstrainSamples20D,3 nextstrainSamples20F,2 nextstrainSamples20F,3 nextstrainSamples20G,2 nextstrainSamples20G,3 nextstrainSamples21A_Delta,3 nextstrainSamples21A_Delta,4 nextstrainSamples21B_Kappa,3 nextstrainSamples21B_Kappa,4 nextstrainSamples21D_Eta,3 nextstrainSamples21D_Eta,4 nextstrainSamples21E_Theta,3 nextstrainSamples21E_Theta,4 nextstrainSamples21F_Iota,3 nextstrainSamples21F_Iota,4 nextstrainSamples21G_Lambda,3 nextstrainSamples21G_Lambda,4 nextstrainSamples21H_Mu,3 nextstrainSamples21H_Mu,4 nextstrainSamples21I_Delta,3 nextstrainSamples21I_Delta,4 nextstrainSamples21J_Delta,3 nextstrainSamples21J_Delta,4 nextstrainSamplesAll,2 nextstrainSamplesRb,5 nextstrainSamplesViewAll,10 nextstrainSamplesViewNewClades,10 problematicSites,334 problematicSites,362 rappuoli,7 rappuoli,29 rappuoli,44 rappuoli,84 rappuoli,201 rappuoli,223 rappuoli,331 rappuoli,540 rappuoli,649 rappuoli,714 rappuoli,757 rappuoli,822 rappuoli,852 resist,3 resist,4 resist,21 resist,66 resist,78 resistPred,3 resistPred,148 sarsCov2Phylo,8 sarsCov2Phylo,35 sarsCov2Phylo,45 sarsCov2Phylo,70 sarsCov2Phylo,121 sarsCov2Phylo,339 sarsCov2Phylo,480 sarsCov2Phylo,738 sarsCov2Phylo,776 sarsCov2Phylo,786 sarsCov2PhyloFull,6 sarsCov2PhyloMinAf001,7 sarsCov2PhyloMinAf01,7 sarsCov2PhyloPub,8 sarsCov2PhyloPub,49 sarsCov2PhyloPub,59 sarsCov2PhyloPub,84 sarsCov2PhyloPub,134 sarsCov2PhyloPub,350 sarsCov2PhyloPub,737 sarsCov2PhyloPub,818 sarsCov2PhyloPub,830 sarsCov2PhyloPub,840 sarsCov2PhyloPub,851 sarsCov2PhyloPubAllFull,8 sarsCov2PhyloPubAllMinAf001,6 sarsCov2PhyloPubAllMinAf01,6 spikeMuts,2 spikeMuts,5 spikeMuts,37 spikeMuts,64 spikeMuts,76 spikeMuts,95 spikeMuts,117 spikeMuts,389 unipCov2Chain,211 unipCov2DisulfBond,207 unipCov2Domain,206 unipCov2LocCytopl,206 unipCov2LocExtra,206 unipCov2LocSignal,207 unipCov2LocTransMemb,207 unipCov2Modif,210 unipCov2Mut,1 unipCov2Mut,5 unipCov2Mut,207 unipCov2Other,207 unipCov2Repeat,205 unipCov2Struct,209 variantAaMutsV2_B_1_1_7,11 variantAaMutsV2_B_1_351,11 variantAaMutsV2_B_1_429,11 variantAaMutsV2_B_1_525,10 variantAaMutsV2_B_1_526,11 variantAaMutsV2_B_1_617_1,11 variantAaMutsV2_B_1_617_2,11 variantAaMutsV2_B_1_621,11 variantAaMutsV2_C_37,11 variantAaMutsV2_P_1,11 variantAaMuts_BA_2,9 variantAaMuts_BA_2_12_1,9 variantAaMuts_BA_2_75,9 variantAaMuts_BA_2_86,9 variantAaMuts_BA_4,9 variantAaMuts_BA_5,9 variantAaMuts_BQ_1,9 variantAaMuts_B_1_1_529,11 variantAaMuts_CH_1_1,9 variantAaMuts_EG_5_1,9 variantAaMuts_HK_3,9 variantAaMuts_JN_1,9 variantAaMuts_XBB,9 variantAaMuts_XBB_1_16,9 variantAaMuts_XBB_1_5,9 variantAaMuts_XBB_1_5_70,9 variantAaMuts_XBB_1_9,9 variantAaMuts_XBB_2_3,9 variantMuts,4 variantMuts,32 variantMuts,65 variantMuts,119 variantMuts,216 variantMuts,716 variantMuts,739 variantMuts,790 variantMuts,1319 variantMuts,1389 variantNucMutsV2_B_1_1_7,10 variantNucMutsV2_B_1_351,10 variantNucMutsV2_B_1_429,10 variantNucMutsV2_B_1_525,9 variantNucMutsV2_B_1_526,10 variantNucMutsV2_B_1_617_1,10 variantNucMutsV2_B_1_617_2,10 variantNucMutsV2_B_1_621,10 variantNucMutsV2_C_37,10 variantNucMutsV2_P_1,10 variantNucMuts_BA_2,9 variantNucMuts_BA_2_12_1,9 variantNucMuts_BA_2_75,9 variantNucMuts_BA_2_86,9 variantNucMuts_BA_4,9 variantNucMuts_BA_5,9 variantNucMuts_BQ_1,9 variantNucMuts_B_1_1_529,11 variantNucMuts_CH_1_1,9 variantNucMuts_EG_5_1,9 variantNucMuts_HK_3,9 variantNucMuts_JN_1,9 variantNucMuts_XBB,9 variantNucMuts_XBB_1_16,9 variantNucMuts_XBB_1_5,9 variantNucMuts_XBB_1_5_70,9 variantNucMuts_XBB_1_9,9 variantNucMuts_XBB_2_3,9 muts cd8escape,3 variantAaMutsV2_B_1_1_7,3 variantAaMutsV2_B_1_351,3 variantAaMutsV2_B_1_429,3 variantAaMutsV2_B_1_525,3 variantAaMutsV2_B_1_526,3 variantAaMutsV2_B_1_617_1,3 variantAaMutsV2_B_1_617_2,3 variantAaMutsV2_B_1_621,3 variantAaMutsV2_C_37,3 variantAaMutsV2_P_1,3 variantAaMuts_BA_2,4 variantAaMuts_BA_2_12_1,4 variantAaMuts_BA_2_75,4 variantAaMuts_BA_2_86,4 variantAaMuts_BA_4,4 variantAaMuts_BA_5,4 variantAaMuts_BQ_1,4 variantAaMuts_B_1_1_529,4 variantAaMuts_CH_1_1,4 variantAaMuts_EG_5_1,4 variantAaMuts_HK_3,4 variantAaMuts_JN_1,4 variantAaMuts_XBB,4 variantAaMuts_XBB_1_16,4 variantAaMuts_XBB_1_5,4 variantAaMuts_XBB_1_5_70,4 variantAaMuts_XBB_1_9,4 variantAaMuts_XBB_2_3,4 variantNucMutsV2_B_1_1_7,3 variantNucMutsV2_B_1_351,3 variantNucMutsV2_B_1_429,3 variantNucMutsV2_B_1_525,3 variantNucMutsV2_B_1_526,3 variantNucMutsV2_B_1_617_1,3 variantNucMutsV2_B_1_617_2,3 variantNucMutsV2_B_1_621,3 variantNucMutsV2_C_37,3 variantNucMutsV2_P_1,3 variantNucMuts_BA_2,4 variantNucMuts_BA_2_12_1,4 variantNucMuts_BA_2_75,4 variantNucMuts_BA_2_86,4 variantNucMuts_BA_4,4 variantNucMuts_BA_5,4 variantNucMuts_BQ_1,4 variantNucMuts_B_1_1_529,4 variantNucMuts_CH_1_1,4 variantNucMuts_EG_5_1,4 variantNucMuts_HK_3,4 variantNucMuts_JN_1,4 variantNucMuts_XBB,4 variantNucMuts_XBB_1_16,4 variantNucMuts_XBB_1_5,4 variantNucMuts_XBB_1_5_70,4 variantNucMuts_XBB_1_9,4 variantNucMuts_XBB_2_3,4 my phyloGenes,526 myoutput.wig icshape,162 nextstrainFreq,250 mysql cpgIslandExt,538 cpgIslandExtUnmasked,541 cpgIslandSuper,538 n Q0_tracks,1242 Q0_tracks,1253 Q0_tracks,1308 Q0_tracks,1320 Q1_tracks,1244 Q1_tracks,1255 Q1_tracks,1310 Q1_tracks,1322 Q2_tracks,1244 Q2_tracks,1255 Q2_tracks,1310 Q2_tracks,1322 Q3_tracks,1244 Q3_tracks,1255 Q3_tracks,1310 Q3_tracks,1322 abEscape,878 bloomEscMabAvg,882 bloomEscMax,888 bloomEscSerumAvg,883 bloomEscTop,886 cd8escape,106 cpgIslandExt,386 cpgIslandExt,394 cpgIslandExt,456 cpgIslandExtUnmasked,389 cpgIslandExtUnmasked,397 cpgIslandExtUnmasked,459 cpgIslandSuper,386 cpgIslandSuper,394 cpgIslandSuper,456 escape,885 galaxyEna,1244 galaxyEna,1255 galaxyEna,1310 galaxyEna,1322 galaxyEnaQ0Ba-1,1240 galaxyEnaQ0Ba-1,1251 galaxyEnaQ0Ba-1,1306 galaxyEnaQ0Ba-1,1318 galaxyEnaQ0Ba-1-1,1240 galaxyEnaQ0Ba-1-1,1251 galaxyEnaQ0Ba-1-1,1306 galaxyEnaQ0Ba-1-1,1318 galaxyEnaQ0Ba-1-1-11,1240 galaxyEnaQ0Ba-1-1-11,1251 galaxyEnaQ0Ba-1-1-11,1306 galaxyEnaQ0Ba-1-1-11,1318 galaxyEnaQ0Ba-1-17,1240 galaxyEnaQ0Ba-1-17,1251 galaxyEnaQ0Ba-1-17,1306 galaxyEnaQ0Ba-1-17,1318 galaxyEnaQ0Ba-2,1240 galaxyEnaQ0Ba-2,1251 galaxyEnaQ0Ba-2,1306 galaxyEnaQ0Ba-2,1318 galaxyEnaQ1Ay-4,1240 galaxyEnaQ1Ay-4,1251 galaxyEnaQ1Ay-4,1306 galaxyEnaQ1Ay-4,1318 galaxyEnaQ1Ay-4-2,1240 galaxyEnaQ1Ay-4-2,1251 galaxyEnaQ1Ay-4-2,1306 galaxyEnaQ1Ay-4-2,1318 galaxyEnaQ1Ay-4-2-2,1240 galaxyEnaQ1Ay-4-2-2,1251 galaxyEnaQ1Ay-4-2-2,1306 galaxyEnaQ1Ay-4-2-2,1318 galaxyEnaQ1Ay-43,1240 galaxyEnaQ1Ay-43,1251 galaxyEnaQ1Ay-43,1306 galaxyEnaQ1Ay-43,1318 galaxyEnaQ1Ba-1-17,1240 galaxyEnaQ1Ba-1-17,1251 galaxyEnaQ1Ba-1-17,1306 galaxyEnaQ1Ba-1-17,1318 galaxyEnaQ2Ay-120,1240 galaxyEnaQ2Ay-120,1251 galaxyEnaQ2Ay-120,1306 galaxyEnaQ2Ay-120,1318 galaxyEnaQ2Ay-122,1240 galaxyEnaQ2Ay-122,1251 galaxyEnaQ2Ay-122,1306 galaxyEnaQ2Ay-122,1318 galaxyEnaQ2Ay-4,1240 galaxyEnaQ2Ay-4,1251 galaxyEnaQ2Ay-4,1306 galaxyEnaQ2Ay-4,1318 galaxyEnaQ2Ay-5,1240 galaxyEnaQ2Ay-5,1251 galaxyEnaQ2Ay-5,1306 galaxyEnaQ2Ay-5,1318 galaxyEnaQ2Ay-6,1240 galaxyEnaQ2Ay-6,1251 galaxyEnaQ2Ay-6,1306 galaxyEnaQ2Ay-6,1318 galaxyEnaQ3Ay-4,1240 galaxyEnaQ3Ay-4,1251 galaxyEnaQ3Ay-4,1306 galaxyEnaQ3Ay-4,1318 galaxyEnaQ3Ay-5,1240 galaxyEnaQ3Ay-5,1251 galaxyEnaQ3Ay-5,1306 galaxyEnaQ3Ay-5,1318 galaxyEnaQ3Ay-9,1240 galaxyEnaQ3Ay-9,1251 galaxyEnaQ3Ay-9,1306 galaxyEnaQ3Ay-9,1318 galaxyEnaQ3B-1-1-7,1240 galaxyEnaQ3B-1-1-7,1251 galaxyEnaQ3B-1-1-7,1306 galaxyEnaQ3B-1-1-7,1318 galaxyEnaQ3B-1-617-2,1240 galaxyEnaQ3B-1-617-2,1251 galaxyEnaQ3B-1-617-2,1306 galaxyEnaQ3B-1-617-2,1318 iedb,108 kimRnaMod,21 mccoy,878 phyloGenes,93 phyloGenes,130 phyloGenes,307 phyloGenes,558 primers,153 primers,178 problematicSites,540 problematicSites,550 problematicSites,562 problematicSites,574 rappuoli,885 recomb,331 recomb,338 rnaStructRangan,106 sarsCov2Phylo,188 sarsCov2Phylo,197 sarsCov2Phylo,212 sarsCov2Phylo,225 sarsCov2Phylo,239 sarsCov2Phylo,635 sarsCov2Phylo,1051 sarsCov2Phylo,1061 sarsCov2Phylo,1073 sarsCov2Phylo,1085 sarsCov2PhyloPub,195 sarsCov2PhyloPub,204 sarsCov2PhyloPub,219 sarsCov2PhyloPub,232 sarsCov2PhyloPub,246 sarsCov2PhyloPub,659 sarsCov2PhyloPub,1171 sarsCov2PhyloPub,1181 sarsCov2PhyloPub,1193 sarsCov2PhyloPub,1205 sarsCov2PhyloPub,1226 treangen,292 vaccines,569 variantMuts,577 variantMuts,579 variantMuts,592 variantMuts,594 variantMuts,1282 n-terminal targets,120 n1-methyl-pseudouridine vaccines,81 n439k spikeMuts,127 n501 spikeMuts,134 spikeMuts,218 n501y spikeMuts,225 n_bind_avg N_bind_avg,1 n_expr_avg N_expr_avg_Expression,1 na Starr_Bloom,192 Starr_Bloom_bind,186 nachshon Calu3_07hpi,350 ORFs,348 Vero6_05hpi,350 Vero6_24hpi,350 weizmanOrfs,356 nadeau vaccines,503 name abEscape,513 bloomEscMabAvg,517 bloomEscMax,523 bloomEscSerumAvg,518 bloomEscTop,521 escape,520 gordon2,101 mccoy,513 multiz7way,699 poranHla1,101 poranHla2,101 rappuoli,520 spikeMuts,216 strainCons119way,1048 strainCons119way,2165 strainCons44way,996 strainCons44way,1760 targets,148 treangen,134 unipCov2AliSwissprot,87 unipCov2AliSwissprot,144 unipCov2Chain,59 unipCov2Chain,272 unipCov2Chain,350 unipCov2DisulfBond,55 unipCov2DisulfBond,268 unipCov2DisulfBond,346 unipCov2Domain,54 unipCov2Domain,267 unipCov2Domain,345 unipCov2Interest,59 unipCov2LocCytopl,54 unipCov2LocCytopl,267 unipCov2LocCytopl,345 unipCov2LocExtra,54 unipCov2LocExtra,267 unipCov2LocExtra,345 unipCov2LocSignal,55 unipCov2LocSignal,268 unipCov2LocSignal,346 unipCov2LocTransMemb,55 unipCov2LocTransMemb,268 unipCov2LocTransMemb,346 unipCov2Modif,58 unipCov2Modif,271 unipCov2Modif,349 unipCov2Mut,55 unipCov2Mut,268 unipCov2Mut,346 unipCov2Other,55 unipCov2Other,268 unipCov2Other,346 unipCov2Repeat,53 unipCov2Repeat,266 unipCov2Repeat,344 unipCov2Struct,57 unipCov2Struct,270 unipCov2Struct,348 named nextstrainClade,59 variantMuts,723 variantMuts,745 variantMuts,766 variantMuts,1065 namely phyloGenes,81 phyloGenes,185 names multiz7way,69 multiz7way,78 nextstrainGene,85 nextstrainSamples,145 nextstrainSamples,507 nextstrainSamples,542 nextstrainSamples,582 phyloGenes,45 phyloGenes,569 primers,89 strainCons119way,423 strainCons44way,371 swift,128 ucscToINSDC,21 ucscToINSDC,24 ucscToRefSeq,16 variantMuts,234 naming_clades.md nextstrainClade,97 nanoball kimNp,34 nanop kimNp5pBreak,1 kimNpLdr3pBreak,1 kimNpNc3pBrk,1 nanopore artic,7 articV4,7 articV4_1,7 kimIvtCov,1 kimIvtCov,3 kimIvtCov,24 kimIvtCov,84 kimIvtCov,113 kimNp,11 kimNp,31 kimNp5pBreak,4 kimNpLdr3pBreak,4 kimNpNc3pBrk,4 kimRnaMod,37 kimTranscripts,33 kimTranscripts,142 kimTranscripts,169 kimTranscripts,210 problematicSites,331 rapid,9 rapid,362 transcriptome,25 nanopore_adapter problematicSites,316 narrow sarsCov2Phylo,86 sarsCov2PhyloPub,99 narrow_src problematicSites,333 nat pond,1 primers,134 sarsCov2Phylo,963 sarsCov2PhyloPub,1083 variantMuts,1270 nate microdel,274 nathan addgene,240 national Q0_tracks,63 Q1_tracks,65 Q2_tracks,65 Q3_tracks,65 galaxyEna,65 galaxyEnaQ0Ba-1,61 galaxyEnaQ0Ba-1-1,61 galaxyEnaQ0Ba-1-1-11,61 galaxyEnaQ0Ba-1-17,61 galaxyEnaQ0Ba-2,61 galaxyEnaQ1Ay-4,61 galaxyEnaQ1Ay-4-2,61 galaxyEnaQ1Ay-4-2-2,61 galaxyEnaQ1Ay-43,61 galaxyEnaQ1Ba-1-17,61 galaxyEnaQ2Ay-120,61 galaxyEnaQ2Ay-122,61 galaxyEnaQ2Ay-4,61 galaxyEnaQ2Ay-5,61 galaxyEnaQ2Ay-6,61 galaxyEnaQ3Ay-4,61 galaxyEnaQ3Ay-5,61 galaxyEnaQ3Ay-9,61 galaxyEnaQ3B-1-1-7,61 galaxyEnaQ3B-1-617-2,61 iedb,26 ncbiGeneBGP,190 ncbiProducts,206 potPathoIndel,233 primers,141 sarsCov2PhyloPub,38 variantMuts,1196 native augustusGene,295 natl multiz7way,1150 strainCons119way,2528 strainCons44way,2123 natural pond,4 pond,233 pond,243 nature Calu3_07hpi,373 ORFs,371 Q0_tracks,1347 Q1_tracks,1349 Q2_tracks,1349 Q3_tracks,1349 Vero6_05hpi,373 Vero6_24hpi,373 galaxyEna,1349 galaxyEnaQ0Ba-1,1345 galaxyEnaQ0Ba-1-1,1345 galaxyEnaQ0Ba-1-1-11,1345 galaxyEnaQ0Ba-1-17,1345 galaxyEnaQ0Ba-2,1345 galaxyEnaQ1Ay-4,1345 galaxyEnaQ1Ay-4-2,1345 galaxyEnaQ1Ay-4-2-2,1345 galaxyEnaQ1Ay-43,1345 galaxyEnaQ1Ba-1-17,1345 galaxyEnaQ2Ay-120,1345 galaxyEnaQ2Ay-122,1345 galaxyEnaQ2Ay-4,1345 galaxyEnaQ2Ay-5,1345 galaxyEnaQ2Ay-6,1345 galaxyEnaQ3Ay-4,1345 galaxyEnaQ3Ay-5,1345 galaxyEnaQ3Ay-9,1345 galaxyEnaQ3B-1-1-7,1345 galaxyEnaQ3B-1-617-2,1345 phyloGenes,606 rapid,131 recomb,38 recomb,81 recomb,352 weizmanOrfs,379 navarro Starr_Bloom,250 Starr_Bloom_bind,244 navigate spikeMuts,241 nawrocki rfam,121 nbsp sarsCov2Phylo,174 sarsCov2Phylo,175 sarsCov2Phylo,176 sarsCov2Phylo,177 sarsCov2Phylo,178 sarsCov2Phylo,182 sarsCov2Phylo,183 sarsCov2Phylo,184 sarsCov2Phylo,185 sarsCov2Phylo,186 sarsCov2Phylo,192 sarsCov2Phylo,193 sarsCov2Phylo,194 sarsCov2Phylo,195 sarsCov2Phylo,196 sarsCov2Phylo,220 sarsCov2Phylo,221 sarsCov2Phylo,222 sarsCov2Phylo,223 sarsCov2Phylo,224 sarsCov2Phylo,247 sarsCov2Phylo,248 sarsCov2Phylo,249 sarsCov2Phylo,250 sarsCov2Phylo,251 sarsCov2Phylo,265 sarsCov2Phylo,266 sarsCov2Phylo,267 sarsCov2Phylo,268 sarsCov2Phylo,269 sarsCov2Phylo,280 sarsCov2Phylo,281 sarsCov2Phylo,282 sarsCov2Phylo,283 sarsCov2Phylo,284 sarsCov2Phylo,298 sarsCov2Phylo,299 sarsCov2Phylo,300 sarsCov2Phylo,301 sarsCov2Phylo,302 sarsCov2PhyloPub,181 sarsCov2PhyloPub,182 sarsCov2PhyloPub,183 sarsCov2PhyloPub,184 sarsCov2PhyloPub,185 sarsCov2PhyloPub,189 sarsCov2PhyloPub,190 sarsCov2PhyloPub,191 sarsCov2PhyloPub,192 sarsCov2PhyloPub,193 sarsCov2PhyloPub,199 sarsCov2PhyloPub,200 sarsCov2PhyloPub,201 sarsCov2PhyloPub,202 sarsCov2PhyloPub,203 sarsCov2PhyloPub,227 sarsCov2PhyloPub,228 sarsCov2PhyloPub,229 sarsCov2PhyloPub,230 sarsCov2PhyloPub,231 sarsCov2PhyloPub,254 sarsCov2PhyloPub,255 sarsCov2PhyloPub,256 sarsCov2PhyloPub,257 sarsCov2PhyloPub,258 sarsCov2PhyloPub,272 sarsCov2PhyloPub,273 sarsCov2PhyloPub,274 sarsCov2PhyloPub,275 sarsCov2PhyloPub,276 sarsCov2PhyloPub,287 sarsCov2PhyloPub,288 sarsCov2PhyloPub,289 sarsCov2PhyloPub,290 sarsCov2PhyloPub,291 sarsCov2PhyloPub,305 sarsCov2PhyloPub,306 sarsCov2PhyloPub,307 sarsCov2PhyloPub,308 sarsCov2PhyloPub,309 variantMuts,263 variantMuts,264 variantMuts,265 variantMuts,266 variantMuts,267 variantMuts,280 variantMuts,281 variantMuts,282 variantMuts,283 variantMuts,284 variantMuts,298 variantMuts,299 variantMuts,300 variantMuts,301 variantMuts,302 variantMuts,315 variantMuts,316 variantMuts,317 variantMuts,318 variantMuts,319 variantMuts,331 variantMuts,332 variantMuts,333 variantMuts,334 variantMuts,335 variantMuts,349 variantMuts,350 variantMuts,351 variantMuts,352 variantMuts,353 variantMuts,365 variantMuts,366 variantMuts,367 variantMuts,368 variantMuts,369 variantMuts,379 variantMuts,380 variantMuts,381 variantMuts,382 variantMuts,383 variantMuts,393 variantMuts,394 variantMuts,395 variantMuts,396 variantMuts,397 variantMuts,407 variantMuts,408 variantMuts,409 variantMuts,410 variantMuts,411 variantMuts,422 variantMuts,423 variantMuts,424 variantMuts,425 variantMuts,426 variantMuts,436 variantMuts,437 variantMuts,438 variantMuts,439 variantMuts,440 variantMuts,454 variantMuts,455 variantMuts,456 variantMuts,457 variantMuts,458 variantMuts,475 variantMuts,476 variantMuts,477 variantMuts,478 variantMuts,479 variantMuts,496 variantMuts,497 variantMuts,498 variantMuts,499 variantMuts,500 variantMuts,510 variantMuts,511 variantMuts,512 variantMuts,513 variantMuts,514 variantMuts,529 variantMuts,530 variantMuts,531 variantMuts,532 variantMuts,533 variantMuts,547 variantMuts,548 variantMuts,549 variantMuts,550 variantMuts,551 variantMuts,566 variantMuts,567 variantMuts,568 variantMuts,569 variantMuts,570 variantMuts,581 variantMuts,582 variantMuts,583 variantMuts,584 variantMuts,585 variantMuts,596 variantMuts,597 variantMuts,598 variantMuts,599 variantMuts,600 variantMuts,609 variantMuts,610 variantMuts,611 variantMuts,612 variantMuts,613 variantMuts,622 variantMuts,623 variantMuts,624 variantMuts,625 variantMuts,626 variantMuts,638 variantMuts,639 variantMuts,640 variantMuts,641 variantMuts,642 variantMuts,653 variantMuts,654 variantMuts,655 variantMuts,656 variantMuts,657 variantMuts,669 variantMuts,670 variantMuts,671 variantMuts,672 variantMuts,673 variantMuts,684 variantMuts,685 variantMuts,686 variantMuts,687 variantMuts,688 variantMuts,700 variantMuts,701 variantMuts,702 variantMuts,703 variantMuts,704 nc pyle,279 nc-brkpt kimMgiNc3p,2 kimMgiNc5p,2 kimNp5pBreak,2 kimNpNc3pBrk,2 nc63 igg_Ctrl_NC63,2 igg_Ctrl_NC63,4 igm_Ctrl_NC63,2 igm_Ctrl_NC63,4 nc64 igg_Ctrl_NC64,2 igg_Ctrl_NC64,4 igm_Ctrl_NC64,2 igm_Ctrl_NC64,4 nc65 igg_Ctrl_NC65,2 igg_Ctrl_NC65,4 igm_Ctrl_NC65,2 igm_Ctrl_NC65,4 nc66 igg_Ctrl_NC66,2 igg_Ctrl_NC66,4 igm_Ctrl_NC66,2 igm_Ctrl_NC66,4 nc67 igg_Ctrl_NC67,2 igg_Ctrl_NC67,4 igm_Ctrl_NC67,2 igm_Ctrl_NC67,4 nc95 igg_Ctrl_NC95,2 igg_Ctrl_NC95,4 igm_Ctrl_NC95,2 igm_Ctrl_NC95,4 nc96 igg_Ctrl_NC96,2 igg_Ctrl_NC96,4 igm_Ctrl_NC96,2 igm_Ctrl_NC96,4 nc97 igg_Ctrl_NC97,2 igg_Ctrl_NC97,4 igm_Ctrl_NC97,2 igm_Ctrl_NC97,4 nc98 igg_Ctrl_NC98,2 igg_Ctrl_NC98,4 igm_Ctrl_NC98,2 igm_Ctrl_NC98,4 nc_001451v1 strainCons119way,1606 nc_001846v1 strainCons119way,1618 nc_002306v3 strainCons119way,1626 nc_002645v1 strainCons119way,1632 nc_003045v1 strainCons119way,1620 nc_003436v1 strainCons119way,1629 nc_004718v3 strainCons119way,1597 strainCons44way,1230 nc_005831v2 strainCons119way,1634 nc_006213v1 strainCons119way,1621 nc_006577v2 strainCons119way,1624 nc_009019v1 strainCons119way,1600 nc_009020v1 strainCons119way,1601 nc_009021v1 strainCons119way,1648 nc_009657v1 strainCons119way,1636 nc_009988v1 strainCons119way,1639 nc_010437v1 strainCons119way,1637 nc_010438v1 strainCons119way,1638 nc_010646v1 strainCons119way,1625 nc_010800v1 strainCons119way,1607 nc_011547v1 strainCons119way,1608 nc_011549v1 strainCons119way,1609 nc_011550v1 strainCons119way,1611 nc_012936v1 strainCons119way,1619 nc_014470v1 strainCons119way,1598 strainCons44way,1245 nc_016991v1 strainCons119way,1610 nc_016992v1 strainCons119way,1613 nc_016993v1 strainCons119way,1612 nc_016994v1 strainCons119way,1616 nc_016995v1 strainCons119way,1650 nc_016996v1 strainCons119way,1615 nc_017083v1 strainCons119way,1622 nc_018871v1 strainCons119way,1643 nc_019843v3 strainCons119way,1602 nc_022103v1 strainCons119way,1642 nc_023760v1 strainCons119way,1630 nc_025217v1 strainCons119way,1617 nc_026011v1 strainCons119way,1623 nc_028752v1 strainCons119way,1633 nc_028806v1 strainCons119way,1627 nc_028811v1 strainCons119way,1645 nc_028814v1 strainCons119way,1644 nc_028824v1 strainCons119way,1640 nc_028833v1 strainCons119way,1641 nc_030292v1 strainCons119way,1631 nc_030886v1 strainCons119way,1649 nc_032107v1 strainCons119way,1635 nc_032730v1 strainCons119way,1646 nc_034440v1 strainCons119way,1604 nc_034972v1 strainCons119way,1647 nc_035191v1 strainCons119way,1599 nc_038294v1 strainCons119way,1603 nc_038861v1 strainCons119way,1628 nc_039207v1 strainCons119way,1605 nc_039208v1 strainCons119way,1614 nc_045512.2 contacts,251 multiz7way,35 ncbiGeneBGP,6 ncbiGeneBGP,34 ncbiGeneBGP,38 ncbiProducts,37 ncbiProducts,41 nextstrainFreq,73 nextstrainParsimony,90 nextstrainSamples,877 sarsCov2Phylo,596 sarsCov2PhyloPub,623 sarsCov2PhyloPub,790 strainCons119way,58 strainCons44way,54 swift,69 nc_045512v2 IgG_Z-score-_COVID-19_patients,378 IgM_Z-score-_COVID-19_patients,378 addgene,173 artic,160 articV4,160 articV4_1,173 bpmIggCovidSum,387 bpmIgmCovidSum,387 cas13Crispr,445 contacts,373 icshape,130 icshape,150 kimRnaMod,207 kimTranscripts,425 multiz7way,764 ncbiGeneBGP,140 ncbiProducts,156 nextstrainFreq,219 nextstrainFreq,239 pbm,387 phyloGenes,422 poranHla1,235 poranHla2,235 rapid,314 strainCons119way,1524 strainCons119way,1532 strainCons44way,1194 strainCons44way,1202 swift,243 transcriptome,431 unipCov2AliSwissprot,371 unipCov2Chain,601 unipCov2DisulfBond,597 unipCov2Domain,596 unipCov2Interest,277 unipCov2LocCytopl,596 unipCov2LocExtra,596 unipCov2LocSignal,597 unipCov2LocTransMemb,597 unipCov2Modif,600 unipCov2Mut,597 unipCov2Other,597 unipCov2Repeat,595 unipCov2Struct,599 vaccines,288 vaccines,295 vaccines,302 varskip,166 ncbi gap,27 gap,30 gap,56 gold,29 gold,32 gold,55 microdel,117 microdel,244 multiz7way,30 multiz7way,81 ncbiGeneBGP,1 ncbiGeneBGP,3 ncbiGeneBGP,13 ncbiGeneBGP,30 ncbiGeneBGP,186 ncbiProducts,1 ncbiProducts,3 ncbiProducts,15 ncbiProducts,33 ncbiProducts,202 rfam,122 sarsCov2PhyloPub,31 strainCons119way,80 strainCons119way,410 strainCons119way,1750 strainCons44way,358 strainCons44way,1345 swift,66 ucscToINSDC,39 ucscToRefSeq,22 ucscToRefSeq,33 windowmaskerSdust,29 windowmaskerSdust,43 ncbigene.bb ncbiGeneBGP,138 ncbiProducts,154 ncov epitopes,78 epitopes,338 nextstrainClade,91 nextstrainGene,7 ncov2019_guide_design cas13Crispr,23 ncpsb pbm,20 ncs contacts,229 ne rapid,339 near cpgIslandExt,31 cpgIslandExtUnmasked,34 cpgIslandSuper,31 problematicSites,364 pyle,178 nearby PhyloCSF_smooth,566 PhyloCSFpower,581 contacts,148 neb varskip,1 varskip,7 varskip,21 varskip,63 varskip1a,3 varskip2,3 varskip2b,3 varskipVsl1a,4 necessarily problematicSites,262 targets,164 necessary problematicSites,387 need nextstrainParsimony,194 publicAnnots,91 needed problematicSites,279 negative IgG_Z-score-_COVID-19_patients,231 IgM_Z-score-_COVID-19_patients,231 Negative_Selection,1 Negative_Selection,5 Starr_Bloom,137 Starr_Bloom_bind,131 bpmIggCovidSum,240 bpmIgmCovidSum,240 kimTranscripts,75 kimTranscripts,79 pbm,240 pbmShanghai,232 pbmShanghai,330 pond,143 strainCons119way,349 strainCons119way,379 strainCons44way,297 strainCons44way,327 transcriptome,67 transcriptome,71 neher nextstrainClade,258 nextstrainFreq,393 nextstrainFreq,416 nextstrainGene,207 nextstrainParsimony,460 nextstrainSamples,1013 nextstrainSamples,1036 sarsCov2Phylo,986 sarsCov2PhyloPub,1106 neighbor multiz7way,750 multiz7way,760 strainCons119way,1510 strainCons119way,1520 strainCons44way,1180 strainCons44way,1190 neighbors strainCons119way,222 strainCons44way,170 neighbour_linked problematicSites,360 neither transcriptome,307 nekrutenko Q0_tracks,1263 Q0_tracks,1337 Q1_tracks,1265 Q1_tracks,1339 Q2_tracks,1265 Q2_tracks,1339 Q3_tracks,1265 Q3_tracks,1339 galaxyEna,1265 galaxyEna,1339 galaxyEnaQ0Ba-1,1261 galaxyEnaQ0Ba-1,1335 galaxyEnaQ0Ba-1-1,1261 galaxyEnaQ0Ba-1-1,1335 galaxyEnaQ0Ba-1-1-11,1261 galaxyEnaQ0Ba-1-1-11,1335 galaxyEnaQ0Ba-1-17,1261 galaxyEnaQ0Ba-1-17,1335 galaxyEnaQ0Ba-2,1261 galaxyEnaQ0Ba-2,1335 galaxyEnaQ1Ay-4,1261 galaxyEnaQ1Ay-4,1335 galaxyEnaQ1Ay-4-2,1261 galaxyEnaQ1Ay-4-2,1335 galaxyEnaQ1Ay-4-2-2,1261 galaxyEnaQ1Ay-4-2-2,1335 galaxyEnaQ1Ay-43,1261 galaxyEnaQ1Ay-43,1335 galaxyEnaQ1Ba-1-17,1261 galaxyEnaQ1Ba-1-17,1335 galaxyEnaQ2Ay-120,1261 galaxyEnaQ2Ay-120,1335 galaxyEnaQ2Ay-122,1261 galaxyEnaQ2Ay-122,1335 galaxyEnaQ2Ay-4,1261 galaxyEnaQ2Ay-4,1335 galaxyEnaQ2Ay-5,1261 galaxyEnaQ2Ay-5,1335 galaxyEnaQ2Ay-6,1261 galaxyEnaQ2Ay-6,1335 galaxyEnaQ3Ay-4,1261 galaxyEnaQ3Ay-4,1335 galaxyEnaQ3Ay-5,1261 galaxyEnaQ3Ay-5,1335 galaxyEnaQ3Ay-9,1261 galaxyEnaQ3Ay-9,1335 galaxyEnaQ3B-1-1-7,1261 galaxyEnaQ3B-1-1-7,1335 galaxyEnaQ3B-1-617-2,1261 galaxyEnaQ3B-1-617-2,1335 nelly spikeMuts,135 nelson phyloGenes,550 nematodes augustusGene,211 nerli rosettaMhc,333 rosettaMhc,353 rosettaMhc,368 rosettaMhc,392 net multiz7way,693 multiz7way,1125 strainCons119way,1042 strainCons119way,2503 strainCons44way,990 strainCons44way,2098 netmhc rosettaMhc,7 netmhcpan rosettaMhc,222 rosettaMhc,225 rosettaMhc,229 rosettaMhc,315 netmhcpan4.0 rosettaMhc,181 rosettaMhc,206 rosettaMhc,264 rosettaMhc,286 netmhcpan4.0el epitopes,40 netting multiz7way,876 strainCons119way,2254 strainCons44way,1849 network artic,22 artic,48 articV4,22 articV4,51 articV4_1,22 articV4_1,62 neutral pond,140 strainCons119way,314 strainCons119way,369 strainCons44way,262 strainCons44way,317 neutralization abEscape,822 bloomEscMabAvg,826 bloomEscMax,832 bloomEscSerumAvg,827 bloomEscTop,830 escape,829 mccoy,9 mccoy,822 rappuoli,829 neutralizing abEscape,163 abEscape,201 abEscape,896 bloomEscMabAvg,167 bloomEscMabAvg,205 bloomEscMabAvg,900 bloomEscMax,173 bloomEscMax,211 bloomEscMax,906 bloomEscSerumAvg,168 bloomEscSerumAvg,206 bloomEscSerumAvg,901 bloomEscTop,171 bloomEscTop,209 bloomEscTop,904 escape,170 escape,208 escape,903 mccoy,163 mccoy,201 mccoy,896 pbmShanghai,523 rappuoli,13 rappuoli,170 rappuoli,208 rappuoli,903 neutrally strainCons119way,1694 strainCons44way,1289 new augustusGene,329 crisprDet,117 crisprDet,125 multiz7way,1096 recomb,87 strainCons119way,2474 strainCons44way,2069 treangen,95 treangen,118 treangen,208 variantMuts,1051 variantMuts,1057 variantMuts,1377 varskip,4 weizmanOrfs,3 newly Q0_tracks,459 Q0_tracks,999 Q1_tracks,461 Q1_tracks,1001 Q2_tracks,461 Q2_tracks,1001 Q3_tracks,461 Q3_tracks,1001 cpgIslandExt,77 cpgIslandExtUnmasked,80 cpgIslandSuper,77 galaxyEna,461 galaxyEna,1001 galaxyEnaQ0Ba-1,457 galaxyEnaQ0Ba-1,997 galaxyEnaQ0Ba-1-1,457 galaxyEnaQ0Ba-1-1,997 galaxyEnaQ0Ba-1-1-11,457 galaxyEnaQ0Ba-1-1-11,997 galaxyEnaQ0Ba-1-17,457 galaxyEnaQ0Ba-1-17,997 galaxyEnaQ0Ba-2,457 galaxyEnaQ0Ba-2,997 galaxyEnaQ1Ay-4,457 galaxyEnaQ1Ay-4,997 galaxyEnaQ1Ay-4-2,457 galaxyEnaQ1Ay-4-2,997 galaxyEnaQ1Ay-4-2-2,457 galaxyEnaQ1Ay-4-2-2,997 galaxyEnaQ1Ay-43,457 galaxyEnaQ1Ay-43,997 galaxyEnaQ1Ba-1-17,457 galaxyEnaQ1Ba-1-17,997 galaxyEnaQ2Ay-120,457 galaxyEnaQ2Ay-120,997 galaxyEnaQ2Ay-122,457 galaxyEnaQ2Ay-122,997 galaxyEnaQ2Ay-4,457 galaxyEnaQ2Ay-4,997 galaxyEnaQ2Ay-5,457 galaxyEnaQ2Ay-5,997 galaxyEnaQ2Ay-6,457 galaxyEnaQ2Ay-6,997 galaxyEnaQ3Ay-4,457 galaxyEnaQ3Ay-4,997 galaxyEnaQ3Ay-5,457 galaxyEnaQ3Ay-5,997 galaxyEnaQ3Ay-9,457 galaxyEnaQ3Ay-9,997 galaxyEnaQ3B-1-1-7,457 galaxyEnaQ3B-1-1-7,997 galaxyEnaQ3B-1-617-2,457 galaxyEnaQ3B-1-617-2,997 news vaccines,605 next strainCons119way,1826 strainCons44way,1421 nextstrain nextstrainClade,1 nextstrainClade,3 nextstrainClade,28 nextstrainClade,56 nextstrainClade,90 nextstrainClade,99 nextstrainClade,107 nextstrainClade,120 nextstrainClade,133 nextstrainClade,260 nextstrainFreq,1 nextstrainFreq,3 nextstrainFreq,28 nextstrainFreq,52 nextstrainFreq,91 nextstrainFreq,103 nextstrainFreq,132 nextstrainFreq,248 nextstrainFreq,310 nextstrainFreq,395 nextstrainFreq19A,2 nextstrainFreq19B,2 nextstrainFreq20A,2 nextstrainFreq20B,2 nextstrainFreq20C,2 nextstrainFreq20D,2 nextstrainFreq20F,2 nextstrainFreq20G,2 nextstrainFreq21A_Delta,3 nextstrainFreq21B_Kappa,3 nextstrainFreq21D_Eta,3 nextstrainFreq21E_Theta,3 nextstrainFreq21F_Iota,3 nextstrainFreq21G_Lambda,3 nextstrainFreq21H_Mu,3 nextstrainFreq21I_Delta,3 nextstrainFreq21J_Delta,3 nextstrainFreqAll,2 nextstrainFreqViewAll,3 nextstrainFreqViewNewClades,3 nextstrainGene,1 nextstrainGene,26 nextstrainGene,79 nextstrainGene,90 nextstrainGene,209 nextstrainParsimony,1 nextstrainParsimony,6 nextstrainParsimony,45 nextstrainParsimony,69 nextstrainParsimony,257 nextstrainParsimony,269 nextstrainParsimony,287 nextstrainParsimony,338 nextstrainParsimony,462 nextstrainSamples,1 nextstrainSamples,3 nextstrainSamples,41 nextstrainSamples,98 nextstrainSamples,103 nextstrainSamples,148 nextstrainSamples,170 nextstrainSamples,186 nextstrainSamples,294 nextstrainSamples,339 nextstrainSamples,456 nextstrainSamples,465 nextstrainSamples,523 nextstrainSamples,535 nextstrainSamples,600 nextstrainSamples,650 nextstrainSamples,667 nextstrainSamples,1015 nextstrainSamples19A,7 nextstrainSamples19B,7 nextstrainSamples20A,7 nextstrainSamples20B,7 nextstrainSamples20C,7 nextstrainSamples20D,7 nextstrainSamples20F,7 nextstrainSamples20G,7 nextstrainSamples21A_Delta,9 nextstrainSamples21B_Kappa,9 nextstrainSamples21D_Eta,9 nextstrainSamples21E_Theta,9 nextstrainSamples21F_Iota,9 nextstrainSamples21G_Lambda,9 nextstrainSamples21H_Mu,9 nextstrainSamples21I_Delta,9 nextstrainSamples21J_Delta,9 nextstrainSamplesAll,4 nextstrainSamplesRb,7 nextstrainSamplesViewAll,3 nextstrainSamplesViewNewClades,3 sarsCov2Phylo,164 sarsCov2Phylo,171 sarsCov2PhyloPub,170 sarsCov2PhyloPub,178 spikeMuts,172 variantMuts,1096 nextstrain.org nextstrainClade,15 nextstrainClade,221 nextstrainFreq,12 nextstrainFreq,333 nextstrainFreq,354 nextstrainGene,6 nextstrainGene,13 nextstrainGene,170 nextstrainParsimony,15 nextstrainParsimony,379 nextstrainParsimony,433 nextstrainSamples,15 nextstrainSamples,598 nextstrainSamples,704 nextstrainSamples,910 nextstrainSamples,976 variantMuts,229 nextstrainclade.bb nextstrainClade,188 nextstrainfreqb4 nextstrainFreq,217 nextstraingene nextstrainGene,138 nextstrainparsimony.bw nextstrainParsimony,350 nextstrainsamples nextstrainFreq,180 nextstrainsamples.bigwig nextstrainFreq,249 ngs swift,24 nguyen nextstrainSamples,1053 niaid iedb,33 resistPred,79 nick spikeMuts,128 variantMuts,1233 nickname spikeMuts,228 nicknames spikeMuts,122 nielsen multiz7way,1088 strainCons119way,2466 strainCons44way,2061 niewiadomska resist,10 resist,52 resist,144 resistPred,236 nig augustusGene,270 nigms resistPred,80 niid primers,133 nikolaos rosettaMhc,363 rosettaMhc,382 ning Q0_tracks,1250 Q0_tracks,1331 Q1_tracks,1252 Q1_tracks,1333 Q2_tracks,1252 Q2_tracks,1333 Q3_tracks,1252 Q3_tracks,1333 galaxyEna,1252 galaxyEna,1333 galaxyEnaQ0Ba-1,1248 galaxyEnaQ0Ba-1,1329 galaxyEnaQ0Ba-1-1,1248 galaxyEnaQ0Ba-1-1,1329 galaxyEnaQ0Ba-1-1-11,1248 galaxyEnaQ0Ba-1-1-11,1329 galaxyEnaQ0Ba-1-17,1248 galaxyEnaQ0Ba-1-17,1329 galaxyEnaQ0Ba-2,1248 galaxyEnaQ0Ba-2,1329 galaxyEnaQ1Ay-4,1248 galaxyEnaQ1Ay-4,1329 galaxyEnaQ1Ay-4-2,1248 galaxyEnaQ1Ay-4-2,1329 galaxyEnaQ1Ay-4-2-2,1248 galaxyEnaQ1Ay-4-2-2,1329 galaxyEnaQ1Ay-43,1248 galaxyEnaQ1Ay-43,1329 galaxyEnaQ1Ba-1-17,1248 galaxyEnaQ1Ba-1-17,1329 galaxyEnaQ2Ay-120,1248 galaxyEnaQ2Ay-120,1329 galaxyEnaQ2Ay-122,1248 galaxyEnaQ2Ay-122,1329 galaxyEnaQ2Ay-4,1248 galaxyEnaQ2Ay-4,1329 galaxyEnaQ2Ay-5,1248 galaxyEnaQ2Ay-5,1329 galaxyEnaQ2Ay-6,1248 galaxyEnaQ2Ay-6,1329 galaxyEnaQ3Ay-4,1248 galaxyEnaQ3Ay-4,1329 galaxyEnaQ3Ay-5,1248 galaxyEnaQ3Ay-5,1329 galaxyEnaQ3Ay-9,1248 galaxyEnaQ3Ay-9,1329 galaxyEnaQ3B-1-1-7,1248 galaxyEnaQ3B-1-1-7,1329 galaxyEnaQ3B-1-617-2,1248 galaxyEnaQ3B-1-617-2,1329 pond,260 nirmatrelvir resist,33 nl63 multiz7way,724 multiz7way,778 strainCons119way,1422 nmdc60013002_05 strainCons119way,1593 nmdc60013002_06 strainCons119way,1541 nmdc60013002_07 strainCons119way,1538 nmdc60013002_09 strainCons119way,1552 nmdc60013002_10 strainCons119way,1545 no PhyloCSF_smooth,163 PhyloCSFpower,178 Q0_tracks,1270 Q1_tracks,1272 Q2_tracks,1272 Q3_tracks,1272 epitopes,64 galaxyEna,1272 galaxyEnaQ0Ba-1,1268 galaxyEnaQ0Ba-1-1,1268 galaxyEnaQ0Ba-1-1-11,1268 galaxyEnaQ0Ba-1-17,1268 galaxyEnaQ0Ba-2,1268 galaxyEnaQ1Ay-4,1268 galaxyEnaQ1Ay-4-2,1268 galaxyEnaQ1Ay-4-2-2,1268 galaxyEnaQ1Ay-43,1268 galaxyEnaQ1Ba-1-17,1268 galaxyEnaQ2Ay-120,1268 galaxyEnaQ2Ay-122,1268 galaxyEnaQ2Ay-4,1268 galaxyEnaQ2Ay-5,1268 galaxyEnaQ2Ay-6,1268 galaxyEnaQ3Ay-4,1268 galaxyEnaQ3Ay-5,1268 galaxyEnaQ3Ay-9,1268 galaxyEnaQ3B-1-1-7,1268 galaxyEnaQ3B-1-617-2,1268 gap,118 icshape,52 microdel,303 multiz7way,209 multiz7way,238 multiz7way,452 multiz7way,510 nextstrainParsimony,146 pond,176 pyle,121 sarsCov2PhyloPubAllFull,1 strainCons119way,558 strainCons119way,587 strainCons119way,802 strainCons119way,860 strainCons44way,506 strainCons44way,535 strainCons44way,750 strainCons44way,808 noalign strainName119way,15 strainName44way,20 noam potPathoIndel,208 node sarsCov2Phylo,110 sarsCov2PhyloPub,123 nodes sarsCov2Phylo,97 sarsCov2Phylo,686 sarsCov2PhyloPub,110 sarsCov2PhyloPub,793 nodes-hereafter recomb,213 nogenotypes nextstrainSamples,878 nohead primers,301 primers,312 nomask cpgIslandExt,498 cpgIslandExtUnmasked,501 cpgIslandSuper,498 nomenclature gordon2,230 sarsCov2Phylo,954 sarsCov2PhyloPub,1074 variantMuts,1261 non-coding PhyloCSF_smooth,102 PhyloCSF_smooth,449 PhyloCSF_smooth,470 PhyloCSF_smooth,491 PhyloCSF_smooth,495 PhyloCSF_smooth,719 PhyloCSFpower,117 PhyloCSFpower,464 PhyloCSFpower,485 PhyloCSFpower,506 PhyloCSFpower,510 PhyloCSFpower,689 augustusGene,75 cas13Crispr,334 phyloGenes,510 non-conserved strainCons119way,1852 strainCons119way,2122 strainCons44way,1447 strainCons44way,1717 non-crystallographic contacts,227 non-reference nextstrainSamples,412 sarsCov2Phylo,413 sarsCov2PhyloPub,442 non-sars-cov-2 multiz7way,366 strainCons119way,708 strainCons44way,656 non-synonymous pond,115 pond,166 non-systematic Q0_tracks,463 Q1_tracks,465 Q2_tracks,465 Q3_tracks,465 galaxyEna,465 galaxyEnaQ0Ba-1,461 galaxyEnaQ0Ba-1-1,461 galaxyEnaQ0Ba-1-1-11,461 galaxyEnaQ0Ba-1-17,461 galaxyEnaQ0Ba-2,461 galaxyEnaQ1Ay-4,461 galaxyEnaQ1Ay-4-2,461 galaxyEnaQ1Ay-4-2-2,461 galaxyEnaQ1Ay-43,461 galaxyEnaQ1Ba-1-17,461 galaxyEnaQ2Ay-120,461 galaxyEnaQ2Ay-122,461 galaxyEnaQ2Ay-4,461 galaxyEnaQ2Ay-5,461 galaxyEnaQ2Ay-6,461 galaxyEnaQ3Ay-4,461 galaxyEnaQ3Ay-5,461 galaxyEnaQ3Ay-9,461 galaxyEnaQ3B-1-1-7,461 galaxyEnaQ3B-1-617-2,461 noncanonical kimMgiNc3p,8 kimMgiNc5p,8 kimNp5pBreak,5 kimNpNc3pBrk,5 noncod strainName119way,13 strainName44way,18 nonhuman potPathoIndel,156 nonneutral multiz7way,1019 strainCons119way,2397 strainCons44way,1992 nonprofits addgene,90 nonsense PhyloCSF_smooth,59 PhyloCSFpower,74 nonsyn strainName119way,9 strainName44way,14 nor transcriptome,317 normalization IgG_Z-score-_COVID-19_patients,143 IgM_Z-score-_COVID-19_patients,143 bpmIggCovidSum,152 bpmIgmCovidSum,152 pbm,152 normalized icshape,14 normally cpgIslandExt,42 cpgIslandExtUnmasked,45 cpgIslandSuper,42 not Calu3_07hpi,41 Calu3_07hpi,272 Calu3_07hpi,286 ORFs,39 ORFs,270 ORFs,284 PhyloCSF_smooth,248 PhyloCSF_smooth,310 PhyloCSF_smooth,318 PhyloCSFpower,263 PhyloCSFpower,325 PhyloCSFpower,333 Q0_tracks,1177 Q1_tracks,1179 Q2_tracks,1179 Q3_tracks,1179 Vero6_05hpi,41 Vero6_05hpi,272 Vero6_05hpi,286 Vero6_24hpi,41 Vero6_24hpi,272 Vero6_24hpi,286 abEscape,354 bloomEscMabAvg,358 bloomEscMax,364 bloomEscSerumAvg,359 bloomEscTop,362 cas13Crispr,313 contacts,223 contacts,258 cpgIslandExt,131 cpgIslandExt,186 cpgIslandExtUnmasked,134 cpgIslandExtUnmasked,189 cpgIslandSuper,131 cpgIslandSuper,186 escape,361 galaxyEna,1179 galaxyEnaQ0Ba-1,1175 galaxyEnaQ0Ba-1-1,1175 galaxyEnaQ0Ba-1-1-11,1175 galaxyEnaQ0Ba-1-17,1175 galaxyEnaQ0Ba-2,1175 galaxyEnaQ1Ay-4,1175 galaxyEnaQ1Ay-4-2,1175 galaxyEnaQ1Ay-4-2-2,1175 galaxyEnaQ1Ay-43,1175 galaxyEnaQ1Ba-1-17,1175 galaxyEnaQ2Ay-120,1175 galaxyEnaQ2Ay-122,1175 galaxyEnaQ2Ay-4,1175 galaxyEnaQ2Ay-5,1175 galaxyEnaQ2Ay-6,1175 galaxyEnaQ3Ay-4,1175 galaxyEnaQ3Ay-5,1175 galaxyEnaQ3Ay-9,1175 galaxyEnaQ3B-1-1-7,1175 galaxyEnaQ3B-1-617-2,1175 kimIvtCov,44 kimIvtCov,61 kimTranscripts,204 kimTranscripts,324 mccoy,354 multiz7way,159 multiz7way,164 multiz7way,459 nextstrainFreq,296 nextstrainGene,50 nextstrainParsimony,186 nextstrainSamples,65 nextstrainSamples,446 nextstrainSamples,948 phyloGenes,161 phyloGenes,296 primers,97 primers,157 primers,166 problematicSites,163 problematicSites,261 problematicSites,312 pyle,90 rappuoli,361 sarsCov2Phylo,200 sarsCov2Phylo,228 sarsCov2Phylo,437 sarsCov2Phylo,446 sarsCov2Phylo,483 sarsCov2Phylo,689 sarsCov2Phylo,747 sarsCov2Phylo,898 sarsCov2PhyloPub,207 sarsCov2PhyloPub,235 sarsCov2PhyloPub,466 sarsCov2PhyloPub,475 sarsCov2PhyloPub,512 sarsCov2PhyloPub,731 sarsCov2PhyloPub,796 sarsCov2PhyloPub,1004 strainCons119way,197 strainCons119way,508 strainCons119way,513 strainCons119way,809 strainCons119way,1933 strainCons119way,2035 strainCons44way,145 strainCons44way,456 strainCons44way,461 strainCons44way,757 strainCons44way,1528 strainCons44way,1630 targets,67 targets,163 targets,204 weizmanOrfs,47 weizmanOrfs,278 weizmanOrfs,292 notation rnaStructRangan,78 note IgG_Z-score-_COVID-19_patients,56 IgM_Z-score-_COVID-19_patients,56 Q0_tracks,630 Q0_tracks,770 Q1_tracks,632 Q1_tracks,772 Q2_tracks,632 Q2_tracks,772 Q3_tracks,632 Q3_tracks,772 abEscape,315 bloomEscMabAvg,319 bloomEscMax,325 bloomEscSerumAvg,320 bloomEscTop,323 bpmIggCovidSum,65 bpmIgmCovidSum,65 escape,322 galaxyEna,632 galaxyEna,772 galaxyEnaQ0Ba-1,628 galaxyEnaQ0Ba-1,768 galaxyEnaQ0Ba-1-1,628 galaxyEnaQ0Ba-1-1,768 galaxyEnaQ0Ba-1-1-11,628 galaxyEnaQ0Ba-1-1-11,768 galaxyEnaQ0Ba-1-17,628 galaxyEnaQ0Ba-1-17,768 galaxyEnaQ0Ba-2,628 galaxyEnaQ0Ba-2,768 galaxyEnaQ1Ay-4,628 galaxyEnaQ1Ay-4,768 galaxyEnaQ1Ay-4-2,628 galaxyEnaQ1Ay-4-2,768 galaxyEnaQ1Ay-4-2-2,628 galaxyEnaQ1Ay-4-2-2,768 galaxyEnaQ1Ay-43,628 galaxyEnaQ1Ay-43,768 galaxyEnaQ1Ba-1-17,628 galaxyEnaQ1Ba-1-17,768 galaxyEnaQ2Ay-120,628 galaxyEnaQ2Ay-120,768 galaxyEnaQ2Ay-122,628 galaxyEnaQ2Ay-122,768 galaxyEnaQ2Ay-4,628 galaxyEnaQ2Ay-4,768 galaxyEnaQ2Ay-5,628 galaxyEnaQ2Ay-5,768 galaxyEnaQ2Ay-6,628 galaxyEnaQ2Ay-6,768 galaxyEnaQ3Ay-4,628 galaxyEnaQ3Ay-4,768 galaxyEnaQ3Ay-5,628 galaxyEnaQ3Ay-5,768 galaxyEnaQ3Ay-9,628 galaxyEnaQ3Ay-9,768 galaxyEnaQ3B-1-1-7,628 galaxyEnaQ3B-1-1-7,768 galaxyEnaQ3B-1-617-2,628 galaxyEnaQ3B-1-617-2,768 mccoy,315 multiz7way,70 pbm,65 pbmShanghai,70 phyloGenes,448 pond,172 pyle,186 rappuoli,322 recomb,149 sarsCov2Phylo,732 targets,64 transcriptome,184 vaccines,73 variantMuts,47 notes phyloGenes,96 phyloGenes,193 rosettaMhc,342 spikeMuts,154 spikeMuts,158 spikeMuts,257 variantMuts,1043 nou vaccines,567 nov abEscape,765 bloomEscMabAvg,769 bloomEscMax,775 bloomEscSerumAvg,770 bloomEscTop,773 escape,772 mccoy,765 rappuoli,772 sarsCov2Phylo,966 sarsCov2PhyloPub,1086 variantAaMuts_B_1_1_529,14 variantMuts,309 variantMuts,342 variantMuts,358 variantMuts,694 variantMuts,1273 variantNucMuts_B_1_1_529,16 nov-2020 variantAaMutsV2_B_1_526,8 variantAaMutsV2_P_1,8 variantNucMutsV2_B_1_526,8 variantNucMutsV2_P_1,8 nov-2021 variantAaMuts_B_1_1_529,8 variantNucMuts_B_1_1_529,9 novel Kim_non-TRS_sgmRNAs,3 PhyloCSF_smooth,106 PhyloCSFpower,121 cas13Crispr,517 kimTranscripts,197 kimTranscripts,306 kimTranscripts,319 primers,264 pyle,298 variantMuts,1315 variantMuts,1403 variantMuts,1422 novo augustusGene,304 recomb,268 now addgene,33 crisprDet,51 problematicSites,211 publicAnnots,63 variantMuts,175 variantMuts,1069 npl strainCons119way,1101 nsgourak rosettaMhc,365 nsp3 resistPred,53 resistPred,116 nsp5 resistPred,55 resistPred,118 nt cas13Crispr,244 transcriptome,150 transcriptome,288 ntu01 strainCons119way,1253 ntu02 strainCons119way,1122 nuc variantNucMutsV2_B_1_1_7,2 variantNucMutsV2_B_1_351,2 variantNucMutsV2_B_1_429,2 variantNucMutsV2_B_1_525,2 variantNucMutsV2_B_1_526,2 variantNucMutsV2_B_1_617_1,2 variantNucMutsV2_B_1_617_2,2 variantNucMutsV2_B_1_621,2 variantNucMutsV2_C_37,2 variantNucMutsV2_P_1,2 variantNucMuts_BA_2,3 variantNucMuts_BA_2_12_1,3 variantNucMuts_BA_2_75,3 variantNucMuts_BA_2_86,3 variantNucMuts_BA_4,3 variantNucMuts_BA_5,3 variantNucMuts_BQ_1,3 variantNucMuts_B_1_1_529,3 variantNucMuts_CH_1_1,3 variantNucMuts_EG_5_1,3 variantNucMuts_HK_3,3 variantNucMuts_JN_1,3 variantNucMuts_XBB,3 variantNucMuts_XBB_1_16,3 variantNucMuts_XBB_1_5,3 variantNucMuts_XBB_1_5_70,3 variantNucMuts_XBB_1_9,3 variantNucMuts_XBB_2_3,3 nuccore ncbiGeneBGP,31 ncbiGeneBGP,37 ncbiProducts,34 ncbiProducts,40 nuclear potPathoIndel,55 nucleic iedb,120 pdb,153 simpleRepeat,85 unipCov2AliSwissprot,453 unipCov2Chain,682 unipCov2DisulfBond,678 unipCov2Domain,677 unipCov2Interest,336 unipCov2LocCytopl,677 unipCov2LocExtra,677 unipCov2LocSignal,678 unipCov2LocTransMemb,678 unipCov2Modif,681 unipCov2Mut,678 unipCov2Other,678 unipCov2Repeat,676 unipCov2Struct,680 nucleocapsid cd8escape,105 potPathoIndel,60 nucleotide IgG_Z-score-_COVID-19_patients,203 IgM_Z-score-_COVID-19_patients,203 Q0_tracks,824 Q1_tracks,826 Q2_tracks,826 Q3_tracks,826 abEscape,507 addgene,166 bloomEscMabAvg,511 bloomEscMax,517 bloomEscSerumAvg,512 bloomEscTop,515 bpmIggCovidSum,21 bpmIggCovidSum,212 bpmIgmCovidSum,21 bpmIgmCovidSum,212 contacts,245 cpgIslandExt,352 cpgIslandExtUnmasked,355 cpgIslandSuper,352 escape,514 galaxyEna,826 galaxyEnaQ0Ba-1,822 galaxyEnaQ0Ba-1-1,822 galaxyEnaQ0Ba-1-1-11,822 galaxyEnaQ0Ba-1-17,822 galaxyEnaQ0Ba-2,822 galaxyEnaQ1Ay-4,822 galaxyEnaQ1Ay-4-2,822 galaxyEnaQ1Ay-4-2-2,822 galaxyEnaQ1Ay-43,822 galaxyEnaQ1Ba-1-17,822 galaxyEnaQ2Ay-120,822 galaxyEnaQ2Ay-122,822 galaxyEnaQ2Ay-4,822 galaxyEnaQ2Ay-5,822 galaxyEnaQ2Ay-6,822 galaxyEnaQ3Ay-4,822 galaxyEnaQ3Ay-5,822 galaxyEnaQ3Ay-9,822 galaxyEnaQ3B-1-1-7,822 galaxyEnaQ3B-1-617-2,822 mccoy,507 multiz7way,290 nextstrainParsimony,20 nextstrainParsimony,110 nextstrainSamples,160 pbm,212 pyle,88 pyle,112 pyle,125 rappuoli,514 recomb,58 resistPred,155 sarsCov2Phylo,6 sarsCov2PhyloFull,4 sarsCov2PhyloMinAf001,5 sarsCov2PhyloMinAf01,5 sarsCov2PhyloPub,6 sarsCov2PhyloPubAllFull,6 sarsCov2PhyloPubAllMinAf001,4 sarsCov2PhyloPubAllMinAf01,4 strainCons119way,184 strainCons119way,411 strainCons119way,1897 strainCons44way,132 strainCons44way,359 strainCons44way,1492 treangen,124 ucscToINSDC,6 ucscToINSDC,28 variantMuts,31 variantMuts,742 variantMuts,750 variantMuts,756 variantMuts,776 variantMuts,1453 variantNucMutsV2_B_1_1_7,9 variantNucMutsV2_B_1_351,9 variantNucMutsV2_B_1_429,9 variantNucMutsV2_B_1_525,8 variantNucMutsV2_B_1_526,9 variantNucMutsV2_B_1_617_1,9 variantNucMutsV2_B_1_617_2,9 variantNucMutsV2_B_1_621,9 variantNucMutsV2_C_37,9 variantNucMutsV2_P_1,9 variantNucMuts_BA_2,8 variantNucMuts_BA_2_12_1,8 variantNucMuts_BA_2_75,8 variantNucMuts_BA_2_86,8 variantNucMuts_BA_4,8 variantNucMuts_BA_5,8 variantNucMuts_BQ_1,8 variantNucMuts_B_1_1_529,10 variantNucMuts_CH_1_1,8 variantNucMuts_EG_5_1,8 variantNucMuts_HK_3,8 variantNucMuts_JN_1,8 variantNucMuts_XBB,8 variantNucMuts_XBB_1_16,8 variantNucMuts_XBB_1_5,8 variantNucMuts_XBB_1_5_70,8 variantNucMuts_XBB_1_9,8 variantNucMuts_XBB_2_3,8 nucleotides icshape,42 icshape,50 strainCons119way,284 strainCons119way,288 strainCons119way,396 strainCons119way,1701 strainCons119way,1997 strainCons44way,232 strainCons44way,236 strainCons44way,344 strainCons44way,1296 strainCons44way,1592 vaccines,135 vaccines,150 vaccines,176 null primers,307 recomb,258 strainCons119way,366 strainCons44way,314 number augustusGene,153 bloomEscTop,17 cas13Crispr,130 cas13Crispr,260 cpgIslandExt,279 cpgIslandExt,286 cpgIslandExt,292 cpgIslandExt,337 cpgIslandExt,383 cpgIslandExt,387 cpgIslandExt,390 cpgIslandExtUnmasked,282 cpgIslandExtUnmasked,289 cpgIslandExtUnmasked,295 cpgIslandExtUnmasked,340 cpgIslandExtUnmasked,386 cpgIslandExtUnmasked,390 cpgIslandExtUnmasked,393 cpgIslandSuper,279 cpgIslandSuper,286 cpgIslandSuper,292 cpgIslandSuper,337 cpgIslandSuper,383 cpgIslandSuper,387 cpgIslandSuper,390 kimTranscripts,175 kimTranscripts,224 kimTranscripts,264 nextstrainParsimony,108 nextstrainParsimony,224 nextstrainSamples,151 nextstrainSamples,362 nextstrainSamples,367 pdb,73 problematicSites,193 problematicSites,248 resistPred,127 sarsCov2Phylo,366 sarsCov2Phylo,371 sarsCov2PhyloPub,395 sarsCov2PhyloPub,400 strainCons119way,413 strainCons44way,361 targets,200 numbered rapid,77 rapid,96 numbers multiz7way,342 strainCons119way,684 strainCons44way,632 nv abEscape,870 bloomEscMabAvg,874 bloomEscMax,880 bloomEscSerumAvg,875 bloomEscTop,878 escape,877 mccoy,870 rappuoli,877 nyu crisprDet,46 crisprDet,114 microdel,123 microdel,247 o Calu3_07hpi,349 Calu3_07hpi,365 ORFs,347 ORFs,363 Vero6_05hpi,349 Vero6_05hpi,365 Vero6_24hpi,349 Vero6_24hpi,365 sarsCov2Phylo,219 sarsCov2Phylo,938 sarsCov2Phylo,988 sarsCov2PhyloPub,226 sarsCov2PhyloPub,1058 sarsCov2PhyloPub,1108 variantMuts,1245 variantMuts,1284 variantMuts,1342 weizmanOrfs,355 weizmanOrfs,371 o-gutierrez cd8escape,195 oa pond,267 obs cpgIslandExt,380 cpgIslandExtUnmasked,383 cpgIslandSuper,380 observations problematicSites,444 observed Q0_tracks,374 Q0_tracks,432 Q0_tracks,574 Q0_tracks,738 Q0_tracks,1066 Q1_tracks,376 Q1_tracks,434 Q1_tracks,576 Q1_tracks,740 Q1_tracks,1068 Q2_tracks,376 Q2_tracks,434 Q2_tracks,576 Q2_tracks,740 Q2_tracks,1068 Q3_tracks,376 Q3_tracks,434 Q3_tracks,576 Q3_tracks,740 Q3_tracks,1068 cd8escape,103 cpgIslandExt,278 cpgIslandExt,364 cpgIslandExtUnmasked,281 cpgIslandExtUnmasked,367 cpgIslandSuper,278 cpgIslandSuper,364 galaxyEna,376 galaxyEna,434 galaxyEna,576 galaxyEna,740 galaxyEna,1068 galaxyEnaQ0Ba-1,372 galaxyEnaQ0Ba-1,430 galaxyEnaQ0Ba-1,572 galaxyEnaQ0Ba-1,736 galaxyEnaQ0Ba-1,1064 galaxyEnaQ0Ba-1-1,372 galaxyEnaQ0Ba-1-1,430 galaxyEnaQ0Ba-1-1,572 galaxyEnaQ0Ba-1-1,736 galaxyEnaQ0Ba-1-1,1064 galaxyEnaQ0Ba-1-1-11,372 galaxyEnaQ0Ba-1-1-11,430 galaxyEnaQ0Ba-1-1-11,572 galaxyEnaQ0Ba-1-1-11,736 galaxyEnaQ0Ba-1-1-11,1064 galaxyEnaQ0Ba-1-17,372 galaxyEnaQ0Ba-1-17,430 galaxyEnaQ0Ba-1-17,572 galaxyEnaQ0Ba-1-17,736 galaxyEnaQ0Ba-1-17,1064 galaxyEnaQ0Ba-2,372 galaxyEnaQ0Ba-2,430 galaxyEnaQ0Ba-2,572 galaxyEnaQ0Ba-2,736 galaxyEnaQ0Ba-2,1064 galaxyEnaQ1Ay-4,372 galaxyEnaQ1Ay-4,430 galaxyEnaQ1Ay-4,572 galaxyEnaQ1Ay-4,736 galaxyEnaQ1Ay-4,1064 galaxyEnaQ1Ay-4-2,372 galaxyEnaQ1Ay-4-2,430 galaxyEnaQ1Ay-4-2,572 galaxyEnaQ1Ay-4-2,736 galaxyEnaQ1Ay-4-2,1064 galaxyEnaQ1Ay-4-2-2,372 galaxyEnaQ1Ay-4-2-2,430 galaxyEnaQ1Ay-4-2-2,572 galaxyEnaQ1Ay-4-2-2,736 galaxyEnaQ1Ay-4-2-2,1064 galaxyEnaQ1Ay-43,372 galaxyEnaQ1Ay-43,430 galaxyEnaQ1Ay-43,572 galaxyEnaQ1Ay-43,736 galaxyEnaQ1Ay-43,1064 galaxyEnaQ1Ba-1-17,372 galaxyEnaQ1Ba-1-17,430 galaxyEnaQ1Ba-1-17,572 galaxyEnaQ1Ba-1-17,736 galaxyEnaQ1Ba-1-17,1064 galaxyEnaQ2Ay-120,372 galaxyEnaQ2Ay-120,430 galaxyEnaQ2Ay-120,572 galaxyEnaQ2Ay-120,736 galaxyEnaQ2Ay-120,1064 galaxyEnaQ2Ay-122,372 galaxyEnaQ2Ay-122,430 galaxyEnaQ2Ay-122,572 galaxyEnaQ2Ay-122,736 galaxyEnaQ2Ay-122,1064 galaxyEnaQ2Ay-4,372 galaxyEnaQ2Ay-4,430 galaxyEnaQ2Ay-4,572 galaxyEnaQ2Ay-4,736 galaxyEnaQ2Ay-4,1064 galaxyEnaQ2Ay-5,372 galaxyEnaQ2Ay-5,430 galaxyEnaQ2Ay-5,572 galaxyEnaQ2Ay-5,736 galaxyEnaQ2Ay-5,1064 galaxyEnaQ2Ay-6,372 galaxyEnaQ2Ay-6,430 galaxyEnaQ2Ay-6,572 galaxyEnaQ2Ay-6,736 galaxyEnaQ2Ay-6,1064 galaxyEnaQ3Ay-4,372 galaxyEnaQ3Ay-4,430 galaxyEnaQ3Ay-4,572 galaxyEnaQ3Ay-4,736 galaxyEnaQ3Ay-4,1064 galaxyEnaQ3Ay-5,372 galaxyEnaQ3Ay-5,430 galaxyEnaQ3Ay-5,572 galaxyEnaQ3Ay-5,736 galaxyEnaQ3Ay-5,1064 galaxyEnaQ3Ay-9,372 galaxyEnaQ3Ay-9,430 galaxyEnaQ3Ay-9,572 galaxyEnaQ3Ay-9,736 galaxyEnaQ3Ay-9,1064 galaxyEnaQ3B-1-1-7,372 galaxyEnaQ3B-1-1-7,430 galaxyEnaQ3B-1-1-7,572 galaxyEnaQ3B-1-1-7,736 galaxyEnaQ3B-1-1-7,1064 galaxyEnaQ3B-1-617-2,372 galaxyEnaQ3B-1-617-2,430 galaxyEnaQ3B-1-617-2,572 galaxyEnaQ3B-1-617-2,736 galaxyEnaQ3B-1-617-2,1064 kimTranscripts,2 nextstrainParsimony,122 nextstrainSamples,245 nextstrainSamples,263 problematicSites,390 problematicSites,429 treangen,142 observing treangen,236 obtain IgG_Z-score-_COVID-19_patients,357 IgM_Z-score-_COVID-19_patients,357 artic,140 articV4,140 articV4_1,153 bpmIggCovidSum,366 bpmIgmCovidSum,366 cas13Crispr,425 contacts,353 kimRnaMod,187 kimTranscripts,404 ncbiGeneBGP,125 ncbiProducts,141 pbm,366 phyloGenes,401 poranHla1,214 poranHla2,214 rapid,294 strainCons119way,1953 strainCons44way,1548 swift,223 transcriptome,410 unipCov2AliSwissprot,354 unipCov2Chain,584 unipCov2DisulfBond,580 unipCov2Domain,579 unipCov2Interest,260 unipCov2LocCytopl,579 unipCov2LocExtra,579 unipCov2LocSignal,580 unipCov2LocTransMemb,580 unipCov2Modif,583 unipCov2Mut,580 unipCov2Other,580 unipCov2Repeat,578 unipCov2Struct,582 varskip,146 obtained PhyloCSF_smooth,109 PhyloCSFpower,124 abEscape,195 augustusGene,126 bloomEscMabAvg,199 bloomEscMax,205 bloomEscSerumAvg,200 bloomEscTop,203 cas13Crispr,90 contacts,117 cpgIslandExt,562 cpgIslandExt,573 cpgIslandExtUnmasked,565 cpgIslandExtUnmasked,576 cpgIslandSuper,562 cpgIslandSuper,573 escape,202 kimIvtCov,31 mccoy,195 nextstrainSamples,105 primers,240 rappuoli,202 sarsCov2PhyloPub,939 unipCov2AliSwissprot,185 unipCov2Chain,438 unipCov2DisulfBond,434 unipCov2Domain,433 unipCov2Interest,114 unipCov2LocCytopl,433 unipCov2LocExtra,433 unipCov2LocSignal,434 unipCov2LocTransMemb,434 unipCov2Modif,437 unipCov2Mut,434 unipCov2Other,434 unipCov2Repeat,432 unipCov2Struct,436 vaccines,192 vaccines,229 vaccines,366 vaccines,526 obtains nextstrainFreq,59 nextstrainParsimony,76 oc43 multiz7way,712 multiz7way,775 strainCons119way,1355 occur microdel,296 nextstrainClade,21 nextstrainGene,19 nextstrainParsimony,196 nextstrainSamples,132 simpleRepeat,36 occurred nextstrainFreq,19 nextstrainParsimony,32 nextstrainParsimony,159 nextstrainSamples,29 sarsCov2Phylo,122 sarsCov2PhyloPub,135 oct augustusGene,334 pbmShanghai,532 variantMuts,325 variantMuts,463 variantMuts,710 oct-2020 variantAaMutsV2_B_1_617_1,8 variantAaMutsV2_B_1_617_2,8 variantNucMutsV2_B_1_617_1,8 variantNucMutsV2_B_1_617_2,8 odd rapid,76 odds strainCons119way,2159 strainCons44way,1754 of Calu3_07hpi,35 Calu3_07hpi,93 Calu3_07hpi,136 Calu3_07hpi,184 Calu3_07hpi,191 Calu3_07hpi,222 Calu3_07hpi,230 Calu3_07hpi,248 Calu3_07hpi,266 Calu3_07hpi,277 Calu3_07hpi,291 Calu3_07hpi,371 IgG_Z-score-_COVID-19_patients,19 IgG_Z-score-_COVID-19_patients,31 IgG_Z-score-_COVID-19_patients,82 IgG_Z-score-_COVID-19_patients,194 IgG_Z-score-_COVID-19_patients,228 IgG_Z-score-_COVID-19_patients,253 IgM_Z-score-_COVID-19_patients,19 IgM_Z-score-_COVID-19_patients,31 IgM_Z-score-_COVID-19_patients,82 IgM_Z-score-_COVID-19_patients,194 IgM_Z-score-_COVID-19_patients,228 IgM_Z-score-_COVID-19_patients,253 Negative_Selection,4 ORFs,33 ORFs,91 ORFs,134 ORFs,182 ORFs,189 ORFs,220 ORFs,228 ORFs,246 ORFs,264 ORFs,275 ORFs,289 ORFs,369 PhyloCSF_smooth,24 PhyloCSF_smooth,31 PhyloCSF_smooth,33 PhyloCSF_smooth,42 PhyloCSF_smooth,55 PhyloCSF_smooth,71 PhyloCSF_smooth,90 PhyloCSF_smooth,138 PhyloCSF_smooth,194 PhyloCSF_smooth,198 PhyloCSF_smooth,211 PhyloCSF_smooth,223 PhyloCSF_smooth,281 PhyloCSF_smooth,407 PhyloCSF_smooth,424 PhyloCSF_smooth,453 PhyloCSF_smooth,462 PhyloCSF_smooth,484 PhyloCSF_smooth,518 PhyloCSF_smooth,531 PhyloCSF_smooth,539 PhyloCSF_smooth,562 PhyloCSF_smooth,755 PhyloCSF_smooth,793 PhyloCSF_smooth,798 PhyloCSFpower,6 PhyloCSFpower,11 PhyloCSFpower,39 PhyloCSFpower,46 PhyloCSFpower,48 PhyloCSFpower,57 PhyloCSFpower,70 PhyloCSFpower,86 PhyloCSFpower,105 PhyloCSFpower,153 PhyloCSFpower,209 PhyloCSFpower,213 PhyloCSFpower,226 PhyloCSFpower,238 PhyloCSFpower,296 PhyloCSFpower,422 PhyloCSFpower,439 PhyloCSFpower,468 PhyloCSFpower,477 PhyloCSFpower,499 PhyloCSFpower,533 PhyloCSFpower,546 PhyloCSFpower,554 PhyloCSFpower,577 PhyloCSFpower,734 PhyloCSFpower,770 PhyloCSFpower,775 Positive_Selection,4 Q0_tracks,12 Q0_tracks,23 Q0_tracks,28 Q0_tracks,42 Q0_tracks,125 Q0_tracks,158 Q0_tracks,173 Q0_tracks,210 Q0_tracks,219 Q0_tracks,253 Q0_tracks,301 Q0_tracks,325 Q0_tracks,342 Q0_tracks,351 Q0_tracks,362 Q0_tracks,391 Q0_tracks,412 Q0_tracks,425 Q0_tracks,437 Q0_tracks,472 Q0_tracks,510 Q0_tracks,554 Q0_tracks,560 Q0_tracks,613 Q0_tracks,627 Q0_tracks,640 Q0_tracks,649 Q0_tracks,684 Q0_tracks,689 Q0_tracks,743 Q0_tracks,777 Q0_tracks,791 Q0_tracks,806 Q0_tracks,821 Q0_tracks,828 Q0_tracks,874 Q0_tracks,919 Q0_tracks,947 Q0_tracks,951 Q0_tracks,955 Q0_tracks,1042 Q0_tracks,1071 Q0_tracks,1090 Q0_tracks,1114 Q0_tracks,1117 Q1_tracks,13 Q1_tracks,25 Q1_tracks,30 Q1_tracks,44 Q1_tracks,127 Q1_tracks,160 Q1_tracks,175 Q1_tracks,212 Q1_tracks,221 Q1_tracks,255 Q1_tracks,303 Q1_tracks,327 Q1_tracks,344 Q1_tracks,353 Q1_tracks,364 Q1_tracks,393 Q1_tracks,414 Q1_tracks,427 Q1_tracks,439 Q1_tracks,474 Q1_tracks,512 Q1_tracks,556 Q1_tracks,562 Q1_tracks,615 Q1_tracks,629 Q1_tracks,642 Q1_tracks,651 Q1_tracks,686 Q1_tracks,691 Q1_tracks,745 Q1_tracks,779 Q1_tracks,793 Q1_tracks,808 Q1_tracks,823 Q1_tracks,830 Q1_tracks,876 Q1_tracks,921 Q1_tracks,949 Q1_tracks,953 Q1_tracks,957 Q1_tracks,1044 Q1_tracks,1073 Q1_tracks,1092 Q1_tracks,1116 Q1_tracks,1119 Q2_tracks,13 Q2_tracks,25 Q2_tracks,30 Q2_tracks,44 Q2_tracks,127 Q2_tracks,160 Q2_tracks,175 Q2_tracks,212 Q2_tracks,221 Q2_tracks,255 Q2_tracks,303 Q2_tracks,327 Q2_tracks,344 Q2_tracks,353 Q2_tracks,364 Q2_tracks,393 Q2_tracks,414 Q2_tracks,427 Q2_tracks,439 Q2_tracks,474 Q2_tracks,512 Q2_tracks,556 Q2_tracks,562 Q2_tracks,615 Q2_tracks,629 Q2_tracks,642 Q2_tracks,651 Q2_tracks,686 Q2_tracks,691 Q2_tracks,745 Q2_tracks,779 Q2_tracks,793 Q2_tracks,808 Q2_tracks,823 Q2_tracks,830 Q2_tracks,876 Q2_tracks,921 Q2_tracks,949 Q2_tracks,953 Q2_tracks,957 Q2_tracks,1044 Q2_tracks,1073 Q2_tracks,1092 Q2_tracks,1116 Q2_tracks,1119 Q3_tracks,13 Q3_tracks,25 Q3_tracks,30 Q3_tracks,44 Q3_tracks,127 Q3_tracks,160 Q3_tracks,175 Q3_tracks,212 Q3_tracks,221 Q3_tracks,255 Q3_tracks,303 Q3_tracks,327 Q3_tracks,344 Q3_tracks,353 Q3_tracks,364 Q3_tracks,393 Q3_tracks,414 Q3_tracks,427 Q3_tracks,439 Q3_tracks,474 Q3_tracks,512 Q3_tracks,556 Q3_tracks,562 Q3_tracks,615 Q3_tracks,629 Q3_tracks,642 Q3_tracks,651 Q3_tracks,686 Q3_tracks,691 Q3_tracks,745 Q3_tracks,779 Q3_tracks,793 Q3_tracks,808 Q3_tracks,823 Q3_tracks,830 Q3_tracks,876 Q3_tracks,921 Q3_tracks,949 Q3_tracks,953 Q3_tracks,957 Q3_tracks,1044 Q3_tracks,1073 Q3_tracks,1092 Q3_tracks,1116 Q3_tracks,1119 Starr_Bloom,26 Starr_Bloom,56 Starr_Bloom,105 Starr_Bloom,142 Starr_Bloom,158 Starr_Bloom,187 Starr_Bloom,263 Starr_Bloom_bind,27 Starr_Bloom_bind,53 Starr_Bloom_bind,100 Starr_Bloom_bind,136 Starr_Bloom_bind,152 Starr_Bloom_bind,181 Starr_Bloom_bind,257 TRS_sites,7 Vero6_05hpi,35 Vero6_05hpi,93 Vero6_05hpi,136 Vero6_05hpi,184 Vero6_05hpi,191 Vero6_05hpi,222 Vero6_05hpi,230 Vero6_05hpi,248 Vero6_05hpi,266 Vero6_05hpi,277 Vero6_05hpi,291 Vero6_05hpi,371 Vero6_24hpi,35 Vero6_24hpi,93 Vero6_24hpi,136 Vero6_24hpi,184 Vero6_24hpi,191 Vero6_24hpi,222 Vero6_24hpi,230 Vero6_24hpi,248 Vero6_24hpi,266 Vero6_24hpi,277 Vero6_24hpi,291 Vero6_24hpi,371 abEscape,18 abEscape,35 abEscape,46 abEscape,74 abEscape,120 abEscape,161 abEscape,198 abEscape,241 abEscape,288 abEscape,296 abEscape,319 abEscape,323 abEscape,370 abEscape,400 abEscape,440 abEscape,514 abEscape,706 abEscape,749 abEscape,809 abEscape,843 addgene,44 addgene,60 addgene,62 addgene,77 addgene,194 addgene,207 artic,34 articV4,37 articV4_1,35 articV4_1,48 augustusGene,72 augustusGene,84 augustusGene,92 augustusGene,94 augustusGene,154 augustusGene,195 augustusGene,236 bloomEscMabAvg,22 bloomEscMabAvg,39 bloomEscMabAvg,50 bloomEscMabAvg,78 bloomEscMabAvg,124 bloomEscMabAvg,165 bloomEscMabAvg,202 bloomEscMabAvg,245 bloomEscMabAvg,292 bloomEscMabAvg,300 bloomEscMabAvg,323 bloomEscMabAvg,327 bloomEscMabAvg,374 bloomEscMabAvg,404 bloomEscMabAvg,444 bloomEscMabAvg,518 bloomEscMabAvg,710 bloomEscMabAvg,753 bloomEscMabAvg,813 bloomEscMabAvg,847 bloomEscMax,28 bloomEscMax,45 bloomEscMax,56 bloomEscMax,84 bloomEscMax,130 bloomEscMax,171 bloomEscMax,208 bloomEscMax,251 bloomEscMax,298 bloomEscMax,306 bloomEscMax,329 bloomEscMax,333 bloomEscMax,380 bloomEscMax,410 bloomEscMax,450 bloomEscMax,524 bloomEscMax,716 bloomEscMax,759 bloomEscMax,819 bloomEscMax,853 bloomEscSerumAvg,23 bloomEscSerumAvg,40 bloomEscSerumAvg,51 bloomEscSerumAvg,79 bloomEscSerumAvg,125 bloomEscSerumAvg,166 bloomEscSerumAvg,203 bloomEscSerumAvg,246 bloomEscSerumAvg,293 bloomEscSerumAvg,301 bloomEscSerumAvg,324 bloomEscSerumAvg,328 bloomEscSerumAvg,375 bloomEscSerumAvg,405 bloomEscSerumAvg,445 bloomEscSerumAvg,519 bloomEscSerumAvg,711 bloomEscSerumAvg,754 bloomEscSerumAvg,814 bloomEscSerumAvg,848 bloomEscTop,18 bloomEscTop,26 bloomEscTop,43 bloomEscTop,54 bloomEscTop,82 bloomEscTop,128 bloomEscTop,169 bloomEscTop,206 bloomEscTop,249 bloomEscTop,296 bloomEscTop,304 bloomEscTop,327 bloomEscTop,331 bloomEscTop,378 bloomEscTop,408 bloomEscTop,448 bloomEscTop,522 bloomEscTop,714 bloomEscTop,757 bloomEscTop,817 bloomEscTop,851 bpmIggCovidSum,18 bpmIggCovidSum,28 bpmIggCovidSum,40 bpmIggCovidSum,91 bpmIggCovidSum,203 bpmIggCovidSum,237 bpmIggCovidSum,262 bpmIgmCovidSum,18 bpmIgmCovidSum,28 bpmIgmCovidSum,40 bpmIgmCovidSum,91 bpmIgmCovidSum,203 bpmIgmCovidSum,237 bpmIgmCovidSum,262 cas13Crispr,16 cas13Crispr,36 cas13Crispr,43 cas13Crispr,85 cas13Crispr,131 cas13Crispr,152 cas13Crispr,171 cas13Crispr,211 cas13Crispr,261 cas13Crispr,304 cas13Crispr,509 cd8escape,42 cd8escape,48 cd8escape,60 cd8escape,68 cd8escape,76 cd8escape,92 cd8escape,177 contacts,10 contacts,43 contacts,58 contacts,86 contacts,90 contacts,123 contacts,164 contacts,213 cpgIslandExt,91 cpgIslandExt,108 cpgIslandExt,144 cpgIslandExt,171 cpgIslandExt,200 cpgIslandExt,221 cpgIslandExt,264 cpgIslandExt,277 cpgIslandExt,280 cpgIslandExt,290 cpgIslandExt,293 cpgIslandExt,312 cpgIslandExt,338 cpgIslandExt,350 cpgIslandExt,363 cpgIslandExt,384 cpgIslandExt,388 cpgIslandExt,391 cpgIslandExt,396 cpgIslandExt,400 cpgIslandExt,592 cpgIslandExtUnmasked,94 cpgIslandExtUnmasked,111 cpgIslandExtUnmasked,147 cpgIslandExtUnmasked,174 cpgIslandExtUnmasked,203 cpgIslandExtUnmasked,224 cpgIslandExtUnmasked,267 cpgIslandExtUnmasked,280 cpgIslandExtUnmasked,283 cpgIslandExtUnmasked,293 cpgIslandExtUnmasked,296 cpgIslandExtUnmasked,315 cpgIslandExtUnmasked,341 cpgIslandExtUnmasked,353 cpgIslandExtUnmasked,366 cpgIslandExtUnmasked,387 cpgIslandExtUnmasked,391 cpgIslandExtUnmasked,394 cpgIslandExtUnmasked,399 cpgIslandExtUnmasked,403 cpgIslandExtUnmasked,595 cpgIslandSuper,91 cpgIslandSuper,108 cpgIslandSuper,144 cpgIslandSuper,171 cpgIslandSuper,200 cpgIslandSuper,221 cpgIslandSuper,264 cpgIslandSuper,277 cpgIslandSuper,280 cpgIslandSuper,290 cpgIslandSuper,293 cpgIslandSuper,312 cpgIslandSuper,338 cpgIslandSuper,350 cpgIslandSuper,363 cpgIslandSuper,384 cpgIslandSuper,388 cpgIslandSuper,391 cpgIslandSuper,396 cpgIslandSuper,400 cpgIslandSuper,592 crisprDet,15 epitopes,89 epitopes,163 epitopes,178 epitopes,186 epitopes,205 epitopes,247 epitopes,281 epitopes,300 escape,25 escape,42 escape,53 escape,81 escape,127 escape,168 escape,205 escape,248 escape,295 escape,303 escape,326 escape,330 escape,377 escape,407 escape,447 escape,521 escape,713 escape,756 escape,816 escape,850 galaxyEna,6 galaxyEna,12 galaxyEna,25 galaxyEna,30 galaxyEna,44 galaxyEna,127 galaxyEna,160 galaxyEna,175 galaxyEna,212 galaxyEna,221 galaxyEna,255 galaxyEna,303 galaxyEna,327 galaxyEna,344 galaxyEna,353 galaxyEna,364 galaxyEna,393 galaxyEna,414 galaxyEna,427 galaxyEna,439 galaxyEna,474 galaxyEna,512 galaxyEna,556 galaxyEna,562 galaxyEna,615 galaxyEna,629 galaxyEna,642 galaxyEna,651 galaxyEna,686 galaxyEna,691 galaxyEna,745 galaxyEna,779 galaxyEna,793 galaxyEna,808 galaxyEna,823 galaxyEna,830 galaxyEna,876 galaxyEna,921 galaxyEna,949 galaxyEna,953 galaxyEna,957 galaxyEna,1044 galaxyEna,1073 galaxyEna,1092 galaxyEna,1116 galaxyEna,1119 galaxyEnaQ0Ba-1,21 galaxyEnaQ0Ba-1,26 galaxyEnaQ0Ba-1,40 galaxyEnaQ0Ba-1,123 galaxyEnaQ0Ba-1,156 galaxyEnaQ0Ba-1,171 galaxyEnaQ0Ba-1,208 galaxyEnaQ0Ba-1,217 galaxyEnaQ0Ba-1,251 galaxyEnaQ0Ba-1,299 galaxyEnaQ0Ba-1,323 galaxyEnaQ0Ba-1,340 galaxyEnaQ0Ba-1,349 galaxyEnaQ0Ba-1,360 galaxyEnaQ0Ba-1,389 galaxyEnaQ0Ba-1,410 galaxyEnaQ0Ba-1,423 galaxyEnaQ0Ba-1,435 galaxyEnaQ0Ba-1,470 galaxyEnaQ0Ba-1,508 galaxyEnaQ0Ba-1,552 galaxyEnaQ0Ba-1,558 galaxyEnaQ0Ba-1,611 galaxyEnaQ0Ba-1,625 galaxyEnaQ0Ba-1,638 galaxyEnaQ0Ba-1,647 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galaxyEnaQ3Ay-5,251 galaxyEnaQ3Ay-5,299 galaxyEnaQ3Ay-5,323 galaxyEnaQ3Ay-5,340 galaxyEnaQ3Ay-5,349 galaxyEnaQ3Ay-5,360 galaxyEnaQ3Ay-5,389 galaxyEnaQ3Ay-5,410 galaxyEnaQ3Ay-5,423 galaxyEnaQ3Ay-5,435 galaxyEnaQ3Ay-5,470 galaxyEnaQ3Ay-5,508 galaxyEnaQ3Ay-5,552 galaxyEnaQ3Ay-5,558 galaxyEnaQ3Ay-5,611 galaxyEnaQ3Ay-5,625 galaxyEnaQ3Ay-5,638 galaxyEnaQ3Ay-5,647 galaxyEnaQ3Ay-5,682 galaxyEnaQ3Ay-5,687 galaxyEnaQ3Ay-5,741 galaxyEnaQ3Ay-5,775 galaxyEnaQ3Ay-5,789 galaxyEnaQ3Ay-5,804 galaxyEnaQ3Ay-5,819 galaxyEnaQ3Ay-5,826 galaxyEnaQ3Ay-5,872 galaxyEnaQ3Ay-5,917 galaxyEnaQ3Ay-5,945 galaxyEnaQ3Ay-5,949 galaxyEnaQ3Ay-5,953 galaxyEnaQ3Ay-5,1040 galaxyEnaQ3Ay-5,1069 galaxyEnaQ3Ay-5,1088 galaxyEnaQ3Ay-5,1112 galaxyEnaQ3Ay-5,1115 galaxyEnaQ3Ay-9,21 galaxyEnaQ3Ay-9,26 galaxyEnaQ3Ay-9,40 galaxyEnaQ3Ay-9,123 galaxyEnaQ3Ay-9,156 galaxyEnaQ3Ay-9,171 galaxyEnaQ3Ay-9,208 galaxyEnaQ3Ay-9,217 galaxyEnaQ3Ay-9,251 galaxyEnaQ3Ay-9,299 galaxyEnaQ3Ay-9,323 galaxyEnaQ3Ay-9,340 galaxyEnaQ3Ay-9,349 galaxyEnaQ3Ay-9,360 galaxyEnaQ3Ay-9,389 galaxyEnaQ3Ay-9,410 galaxyEnaQ3Ay-9,423 galaxyEnaQ3Ay-9,435 galaxyEnaQ3Ay-9,470 galaxyEnaQ3Ay-9,508 galaxyEnaQ3Ay-9,552 galaxyEnaQ3Ay-9,558 galaxyEnaQ3Ay-9,611 galaxyEnaQ3Ay-9,625 galaxyEnaQ3Ay-9,638 galaxyEnaQ3Ay-9,647 galaxyEnaQ3Ay-9,682 galaxyEnaQ3Ay-9,687 galaxyEnaQ3Ay-9,741 galaxyEnaQ3Ay-9,775 galaxyEnaQ3Ay-9,789 galaxyEnaQ3Ay-9,804 galaxyEnaQ3Ay-9,819 galaxyEnaQ3Ay-9,826 galaxyEnaQ3Ay-9,872 galaxyEnaQ3Ay-9,917 galaxyEnaQ3Ay-9,945 galaxyEnaQ3Ay-9,949 galaxyEnaQ3Ay-9,953 galaxyEnaQ3Ay-9,1040 galaxyEnaQ3Ay-9,1069 galaxyEnaQ3Ay-9,1088 galaxyEnaQ3Ay-9,1112 galaxyEnaQ3Ay-9,1115 galaxyEnaQ3B-1-1-7,21 galaxyEnaQ3B-1-1-7,26 galaxyEnaQ3B-1-1-7,40 galaxyEnaQ3B-1-1-7,123 galaxyEnaQ3B-1-1-7,156 galaxyEnaQ3B-1-1-7,171 galaxyEnaQ3B-1-1-7,208 galaxyEnaQ3B-1-1-7,217 galaxyEnaQ3B-1-1-7,251 galaxyEnaQ3B-1-1-7,299 galaxyEnaQ3B-1-1-7,323 galaxyEnaQ3B-1-1-7,340 galaxyEnaQ3B-1-1-7,349 galaxyEnaQ3B-1-1-7,360 galaxyEnaQ3B-1-1-7,389 galaxyEnaQ3B-1-1-7,410 galaxyEnaQ3B-1-1-7,423 galaxyEnaQ3B-1-1-7,435 galaxyEnaQ3B-1-1-7,470 galaxyEnaQ3B-1-1-7,508 galaxyEnaQ3B-1-1-7,552 galaxyEnaQ3B-1-1-7,558 galaxyEnaQ3B-1-1-7,611 galaxyEnaQ3B-1-1-7,625 galaxyEnaQ3B-1-1-7,638 galaxyEnaQ3B-1-1-7,647 galaxyEnaQ3B-1-1-7,682 galaxyEnaQ3B-1-1-7,687 galaxyEnaQ3B-1-1-7,741 galaxyEnaQ3B-1-1-7,775 galaxyEnaQ3B-1-1-7,789 galaxyEnaQ3B-1-1-7,804 galaxyEnaQ3B-1-1-7,819 galaxyEnaQ3B-1-1-7,826 galaxyEnaQ3B-1-1-7,872 galaxyEnaQ3B-1-1-7,917 galaxyEnaQ3B-1-1-7,945 galaxyEnaQ3B-1-1-7,949 galaxyEnaQ3B-1-1-7,953 galaxyEnaQ3B-1-1-7,1040 galaxyEnaQ3B-1-1-7,1069 galaxyEnaQ3B-1-1-7,1088 galaxyEnaQ3B-1-1-7,1112 galaxyEnaQ3B-1-1-7,1115 galaxyEnaQ3B-1-617-2,21 galaxyEnaQ3B-1-617-2,26 galaxyEnaQ3B-1-617-2,40 galaxyEnaQ3B-1-617-2,123 galaxyEnaQ3B-1-617-2,156 galaxyEnaQ3B-1-617-2,171 galaxyEnaQ3B-1-617-2,208 galaxyEnaQ3B-1-617-2,217 galaxyEnaQ3B-1-617-2,251 galaxyEnaQ3B-1-617-2,299 galaxyEnaQ3B-1-617-2,323 galaxyEnaQ3B-1-617-2,340 galaxyEnaQ3B-1-617-2,349 galaxyEnaQ3B-1-617-2,360 galaxyEnaQ3B-1-617-2,389 galaxyEnaQ3B-1-617-2,410 galaxyEnaQ3B-1-617-2,423 galaxyEnaQ3B-1-617-2,435 galaxyEnaQ3B-1-617-2,470 galaxyEnaQ3B-1-617-2,508 galaxyEnaQ3B-1-617-2,552 galaxyEnaQ3B-1-617-2,558 galaxyEnaQ3B-1-617-2,611 galaxyEnaQ3B-1-617-2,625 galaxyEnaQ3B-1-617-2,638 galaxyEnaQ3B-1-617-2,647 galaxyEnaQ3B-1-617-2,682 galaxyEnaQ3B-1-617-2,687 galaxyEnaQ3B-1-617-2,741 galaxyEnaQ3B-1-617-2,775 galaxyEnaQ3B-1-617-2,789 galaxyEnaQ3B-1-617-2,804 galaxyEnaQ3B-1-617-2,819 galaxyEnaQ3B-1-617-2,826 galaxyEnaQ3B-1-617-2,872 galaxyEnaQ3B-1-617-2,917 galaxyEnaQ3B-1-617-2,945 galaxyEnaQ3B-1-617-2,949 galaxyEnaQ3B-1-617-2,953 galaxyEnaQ3B-1-617-2,1040 galaxyEnaQ3B-1-617-2,1069 galaxyEnaQ3B-1-617-2,1088 galaxyEnaQ3B-1-617-2,1112 galaxyEnaQ3B-1-617-2,1115 gap,40 gap,63 gap,82 gap,88 gc5BaseBw,19 gc5BaseBw,46 gc5BaseBw,52 gc5BaseBw,67 gc5BaseBw,76 genscan,43 genscan,110 genscan,134 genscan,212 gold,42 gold,62 gold,88 gold,113 gold,143 gordon2,43 gordon2,91 gordon2,102 gordon2,118 gordon2,137 gordon2,179 gordon2,201 gordon2,211 icshape,18 icshape,43 icshape,64 icshape,212 kimIvtCov,5 kimIvtCov,23 kimIvtCov,39 kimIvtCov,75 kimIvtCov,92 kimIvtCov,107 kimIvtCov,187 kimNp,24 kimNp,49 kimNp,55 kimNp,65 kimNp,100 kimNp,119 kimRnaMod,32 kimRnaMod,54 kimRnaMod,84 kimRnaMod,100 kimRnaMod,244 kimTranscripts,26 kimTranscripts,61 kimTranscripts,176 kimTranscripts,193 kimTranscripts,225 kimTranscripts,246 kimTranscripts,265 kimTranscripts,287 kimTranscripts,474 mccoy,18 mccoy,35 mccoy,46 mccoy,74 mccoy,120 mccoy,161 mccoy,198 mccoy,241 mccoy,288 mccoy,296 mccoy,319 mccoy,323 mccoy,370 mccoy,400 mccoy,440 mccoy,514 mccoy,706 mccoy,749 mccoy,809 mccoy,843 microdel,27 microdel,34 microdel,134 microdel,191 microdel,264 multiz7way,7 multiz7way,10 multiz7way,21 multiz7way,91 multiz7way,103 multiz7way,110 multiz7way,132 multiz7way,147 multiz7way,169 multiz7way,256 multiz7way,272 multiz7way,277 multiz7way,338 multiz7way,352 multiz7way,378 multiz7way,395 multiz7way,442 multiz7way,448 multiz7way,654 multiz7way,657 multiz7way,769 multiz7way,789 multiz7way,839 multiz7way,997 multiz7way,1018 multiz7way,1111 multiz7way,1235 ncbiGeneBGP,192 ncbiProducts,208 nextstrainClade,47 nextstrainClade,84 nextstrainClade,108 nextstrainClade,139 nextstrainClade,226 nextstrainClade,263 nextstrainFreq,26 nextstrainFreq,47 nextstrainFreq,86 nextstrainFreq,111 nextstrainFreq,123 nextstrainFreq,281 nextstrainFreq,290 nextstrainFreq,342 nextstrainFreq,359 nextstrainFreq,398 nextstrainGene,43 nextstrainGene,55 nextstrainGene,175 nextstrainGene,212 nextstrainParsimony,36 nextstrainParsimony,64 nextstrainParsimony,109 nextstrainParsimony,114 nextstrainParsimony,128 nextstrainParsimony,149 nextstrainParsimony,225 nextstrainParsimony,233 nextstrainParsimony,242 nextstrainParsimony,251 nextstrainParsimony,390 nextstrainParsimony,414 nextstrainParsimony,438 nextstrainParsimony,465 nextstrainSamples,5 nextstrainSamples,33 nextstrainSamples,58 nextstrainSamples,70 nextstrainSamples,152 nextstrainSamples,182 nextstrainSamples,215 nextstrainSamples,222 nextstrainSamples,293 nextstrainSamples,331 nextstrainSamples,348 nextstrainSamples,358 nextstrainSamples,363 nextstrainSamples,368 nextstrainSamples,424 nextstrainSamples,472 nextstrainSamples,491 nextstrainSamples,513 nextstrainSamples,519 nextstrainSamples,530 nextstrainSamples,584 nextstrainSamples,618 nextstrainSamples,632 nextstrainSamples,673 nextstrainSamples,685 nextstrainSamples,694 nextstrainSamples,717 nextstrainSamples,795 nextstrainSamples,891 nextstrainSamples,915 nextstrainSamples,933 nextstrainSamples,942 nextstrainSamples,981 nextstrainSamples,1018 nextstrainSamples19A,9 nextstrainSamples19B,9 nextstrainSamples20A,9 nextstrainSamples20B,9 nextstrainSamples20C,9 nextstrainSamples20D,9 nextstrainSamples20F,9 nextstrainSamples20G,9 nextstrainSamples21A_Delta,11 nextstrainSamples21B_Kappa,11 nextstrainSamples21D_Eta,11 nextstrainSamples21E_Theta,11 nextstrainSamples21F_Iota,11 nextstrainSamples21G_Lambda,11 nextstrainSamples21H_Mu,11 nextstrainSamples21I_Delta,11 nextstrainSamples21J_Delta,11 nextstrainSamplesAll,6 nextstrainSamplesRb,9 nextstrainSamplesViewAll,5 nextstrainSamplesViewNewClades,5 pbm,28 pbm,40 pbm,91 pbm,203 pbm,237 pbm,262 pbmShanghai,31 pbmShanghai,79 pbmShanghai,84 pbmShanghai,148 pbmShanghai,226 pbmShanghai,303 pbmShanghai,518 pdb,18 pdb,43 pdb,65 pdb,119 pdb,126 phyloGenes,58 phyloGenes,67 phyloGenes,165 phyloGenes,173 phyloGenes,255 phyloGenes,278 phyloGenes,282 phyloGenes,535 phyloGenes,570 pond,80 pond,118 pond,200 pond,236 pond,246 pond,278 poranHla1,86 poranHla1,132 poranHla1,275 poranHla2,86 poranHla2,132 poranHla2,275 potPathoIndel,53 potPathoIndel,78 potPathoIndel,108 potPathoIndel,138 potPathoIndel,153 potPathoIndel,165 potPathoIndel,222 potPathoIndel,231 potPathoIndel,235 primers,17 primers,43 primers,76 primers,109 primers,112 primers,136 primers,143 primers,149 primers,252 primers,259 primers,262 problematicSites,27 problematicSites,128 problematicSites,138 problematicSites,154 problematicSites,178 problematicSites,187 problematicSites,194 problematicSites,221 problematicSites,231 problematicSites,242 problematicSites,249 problematicSites,294 problematicSites,354 problematicSites,603 pyle,32 pyle,118 pyle,230 pyle,293 pyle,323 rapid,37 rapid,40 rapid,117 rapid,144 rapid,161 rapid,176 rapid,352 rappuoli,17 rappuoli,25 rappuoli,42 rappuoli,53 rappuoli,81 rappuoli,127 rappuoli,168 rappuoli,205 rappuoli,248 rappuoli,295 rappuoli,303 rappuoli,326 rappuoli,330 rappuoli,377 rappuoli,407 rappuoli,447 rappuoli,521 rappuoli,713 rappuoli,756 rappuoli,816 rappuoli,850 recomb,28 recomb,54 recomb,107 recomb,144 recomb,248 recomb,266 resist,48 resistPred,13 resistPred,108 resistPred,122 resistPred,128 resistPred,140 resistPred,154 resistPred,160 rfam,159 rfam,168 rnaStructRangan,17 rnaStructRangan,98 rosettaMhc,19 rosettaMhc,87 rosettaMhc,133 rosettaMhc,164 rosettaMhc,187 rosettaMhc,228 rosettaMhc,239 rosettaMhc,247 rosettaMhc,256 rosettaMhc,279 rosettaMhc,298 rosettaMhc,347 sarsCov2Phylo,53 sarsCov2Phylo,91 sarsCov2Phylo,148 sarsCov2Phylo,157 sarsCov2Phylo,336 sarsCov2Phylo,352 sarsCov2Phylo,362 sarsCov2Phylo,367 sarsCov2Phylo,372 sarsCov2Phylo,425 sarsCov2Phylo,460 sarsCov2Phylo,502 sarsCov2Phylo,530 sarsCov2Phylo,555 sarsCov2Phylo,641 sarsCov2Phylo,685 sarsCov2Phylo,760 sarsCov2Phylo,772 sarsCov2Phylo,792 sarsCov2Phylo,798 sarsCov2Phylo,827 sarsCov2Phylo,883 sarsCov2Phylo,892 sarsCov2Phylo,999 sarsCov2Phylo,1114 sarsCov2Phylo,1155 sarsCov2Phylo,1161 sarsCov2PhyloPub,67 sarsCov2PhyloPub,104 sarsCov2PhyloPub,154 sarsCov2PhyloPub,163 sarsCov2PhyloPub,347 sarsCov2PhyloPub,363 sarsCov2PhyloPub,381 sarsCov2PhyloPub,391 sarsCov2PhyloPub,396 sarsCov2PhyloPub,401 sarsCov2PhyloPub,454 sarsCov2PhyloPub,489 sarsCov2PhyloPub,531 sarsCov2PhyloPub,555 sarsCov2PhyloPub,580 sarsCov2PhyloPub,665 sarsCov2PhyloPub,713 sarsCov2PhyloPub,778 sarsCov2PhyloPub,837 sarsCov2PhyloPub,847 sarsCov2PhyloPub,859 sarsCov2PhyloPub,895 sarsCov2PhyloPub,910 sarsCov2PhyloPub,989 sarsCov2PhyloPub,998 sarsCov2PhyloPub,1044 sarsCov2PhyloPub,1119 sarsCov2PhyloPub,1288 sarsCov2PhyloPub,1294 simpleRepeat,40 spikeMuts,30 spikeMuts,57 spikeMuts,113 spikeMuts,155 spikeMuts,280 spikeMuts,327 spikeMuts,362 spikeMuts,368 spikeMuts,392 spikeMuts,398 spikeMuts,404 spikeMuts,409 strainCons119way,47 strainCons119way,95 strainCons119way,114 strainCons119way,220 strainCons119way,257 strainCons119way,280 strainCons119way,287 strainCons119way,296 strainCons119way,358 strainCons119way,368 strainCons119way,378 strainCons119way,440 strainCons119way,452 strainCons119way,459 strainCons119way,481 strainCons119way,496 strainCons119way,518 strainCons119way,605 strainCons119way,621 strainCons119way,628 strainCons119way,680 strainCons119way,694 strainCons119way,720 strainCons119way,737 strainCons119way,792 strainCons119way,798 strainCons119way,1003 strainCons119way,1006 strainCons119way,1529 strainCons119way,1661 strainCons119way,1700 strainCons119way,1733 strainCons119way,1798 strainCons119way,1806 strainCons119way,1875 strainCons119way,1886 strainCons119way,1895 strainCons119way,1939 strainCons119way,1991 strainCons119way,2020 strainCons119way,2083 strainCons119way,2097 strainCons119way,2149 strainCons119way,2217 strainCons119way,2375 strainCons119way,2396 strainCons119way,2489 strainCons119way,2613 strainCons44way,44 strainCons44way,62 strainCons44way,168 strainCons44way,205 strainCons44way,228 strainCons44way,235 strainCons44way,244 strainCons44way,306 strainCons44way,316 strainCons44way,326 strainCons44way,388 strainCons44way,400 strainCons44way,407 strainCons44way,429 strainCons44way,444 strainCons44way,466 strainCons44way,553 strainCons44way,569 strainCons44way,576 strainCons44way,628 strainCons44way,642 strainCons44way,668 strainCons44way,685 strainCons44way,740 strainCons44way,746 strainCons44way,951 strainCons44way,954 strainCons44way,1199 strainCons44way,1256 strainCons44way,1295 strainCons44way,1328 strainCons44way,1393 strainCons44way,1401 strainCons44way,1470 strainCons44way,1481 strainCons44way,1490 strainCons44way,1534 strainCons44way,1586 strainCons44way,1615 strainCons44way,1678 strainCons44way,1692 strainCons44way,1744 strainCons44way,1812 strainCons44way,1970 strainCons44way,1991 strainCons44way,2084 strainCons44way,2208 strainName119way,5 strainName44way,6 swift,57 swift,98 swift,113 targets,22 targets,43 targets,82 targets,90 targets,99 targets,136 targets,201 targets,235 transcriptome,18 transcriptome,53 transcriptome,226 transcriptome,292 transcriptome,303 transcriptome,314 transcriptome,480 treangen,76 treangen,91 treangen,111 treangen,174 treangen,189 treangen,235 treangen,317 unipCov2AliSwissprot,5 unipCov2AliSwissprot,78 unipCov2AliSwissprot,91 unipCov2AliSwissprot,145 unipCov2AliSwissprot,379 unipCov2Chain,154 unipCov2Chain,244 unipCov2Chain,263 unipCov2Chain,276 unipCov2Chain,351 unipCov2Chain,370 unipCov2Chain,609 unipCov2DisulfBond,150 unipCov2DisulfBond,240 unipCov2DisulfBond,259 unipCov2DisulfBond,272 unipCov2DisulfBond,347 unipCov2DisulfBond,366 unipCov2DisulfBond,605 unipCov2Domain,149 unipCov2Domain,239 unipCov2Domain,258 unipCov2Domain,271 unipCov2Domain,346 unipCov2Domain,365 unipCov2Domain,604 unipCov2Interest,5 unipCov2Interest,20 unipCov2Interest,50 unipCov2LocCytopl,149 unipCov2LocCytopl,239 unipCov2LocCytopl,258 unipCov2LocCytopl,271 unipCov2LocCytopl,346 unipCov2LocCytopl,365 unipCov2LocCytopl,604 unipCov2LocExtra,149 unipCov2LocExtra,239 unipCov2LocExtra,258 unipCov2LocExtra,271 unipCov2LocExtra,346 unipCov2LocExtra,365 unipCov2LocExtra,604 unipCov2LocSignal,150 unipCov2LocSignal,240 unipCov2LocSignal,259 unipCov2LocSignal,272 unipCov2LocSignal,347 unipCov2LocSignal,366 unipCov2LocSignal,605 unipCov2LocTransMemb,150 unipCov2LocTransMemb,240 unipCov2LocTransMemb,259 unipCov2LocTransMemb,272 unipCov2LocTransMemb,347 unipCov2LocTransMemb,366 unipCov2LocTransMemb,605 unipCov2Modif,153 unipCov2Modif,243 unipCov2Modif,262 unipCov2Modif,275 unipCov2Modif,350 unipCov2Modif,369 unipCov2Modif,608 unipCov2Mut,150 unipCov2Mut,240 unipCov2Mut,259 unipCov2Mut,272 unipCov2Mut,347 unipCov2Mut,366 unipCov2Mut,605 unipCov2Other,150 unipCov2Other,240 unipCov2Other,259 unipCov2Other,272 unipCov2Other,347 unipCov2Other,366 unipCov2Other,605 unipCov2Repeat,148 unipCov2Repeat,238 unipCov2Repeat,257 unipCov2Repeat,270 unipCov2Repeat,345 unipCov2Repeat,364 unipCov2Repeat,603 unipCov2Struct,152 unipCov2Struct,242 unipCov2Struct,261 unipCov2Struct,274 unipCov2Struct,349 unipCov2Struct,368 unipCov2Struct,607 vaccines,17 vaccines,55 vaccines,71 vaccines,85 vaccines,121 vaccines,124 vaccines,156 vaccines,385 vaccines,516 vaccines,536 vaccines,578 vaccines,624 vaccines,631 vaccines,636 variantMuts,2 variantMuts,7 variantMuts,56 variantMuts,97 variantMuts,115 variantMuts,137 variantMuts,143 variantMuts,173 variantMuts,181 variantMuts,193 variantMuts,210 variantMuts,212 variantMuts,450 variantMuts,471 variantMuts,492 variantMuts,525 variantMuts,543 variantMuts,562 variantMuts,773 variantMuts,791 variantMuts,825 variantMuts,880 variantMuts,903 variantMuts,914 variantMuts,926 variantMuts,953 variantMuts,1018 variantMuts,1020 variantMuts,1032 variantMuts,1046 variantMuts,1053 variantMuts,1059 variantMuts,1083 variantMuts,1101 variantMuts,1120 variantMuts,1173 variantMuts,1304 variantMuts,1317 variantMuts,1348 variantMuts,1375 variantMuts,1401 variantMuts,1420 variantMuts,1438 varskip,34 weizmanOrfs,41 weizmanOrfs,99 weizmanOrfs,142 weizmanOrfs,190 weizmanOrfs,197 weizmanOrfs,228 weizmanOrfs,236 weizmanOrfs,254 weizmanOrfs,272 weizmanOrfs,283 weizmanOrfs,297 weizmanOrfs,377 off multiz7way,415 publicAnnots,45 off-target cas13Crispr,61 cas13Crispr,132 swift,85 offer nextstrainGene,51 nextstrainSamples,66 offering sarsCov2PhyloPub,735 offers genscan,79 nextstrainFreq,106 nextstrainParsimony,380 nextstrainSamples,705 often PhyloCSF_smooth,330 PhyloCSFpower,345 problematicSites,197 recomb,130 transcriptome,190 varskip,46 og sarsCov2Phylo,951 sarsCov2PhyloPub,1071 variantMuts,1258 ogilvie treangen,306 ok rapid,346 older Q0_tracks,633 Q0_tracks,645 Q1_tracks,635 Q1_tracks,647 Q2_tracks,635 Q2_tracks,647 Q3_tracks,635 Q3_tracks,647 galaxyEna,635 galaxyEna,647 galaxyEnaQ0Ba-1,631 galaxyEnaQ0Ba-1,643 galaxyEnaQ0Ba-1-1,631 galaxyEnaQ0Ba-1-1,643 galaxyEnaQ0Ba-1-1-11,631 galaxyEnaQ0Ba-1-1-11,643 galaxyEnaQ0Ba-1-17,631 galaxyEnaQ0Ba-1-17,643 galaxyEnaQ0Ba-2,631 galaxyEnaQ0Ba-2,643 galaxyEnaQ1Ay-4,631 galaxyEnaQ1Ay-4,643 galaxyEnaQ1Ay-4-2,631 galaxyEnaQ1Ay-4-2,643 galaxyEnaQ1Ay-4-2-2,631 galaxyEnaQ1Ay-4-2-2,643 galaxyEnaQ1Ay-43,631 galaxyEnaQ1Ay-43,643 galaxyEnaQ1Ba-1-17,631 galaxyEnaQ1Ba-1-17,643 galaxyEnaQ2Ay-120,631 galaxyEnaQ2Ay-120,643 galaxyEnaQ2Ay-122,631 galaxyEnaQ2Ay-122,643 galaxyEnaQ2Ay-4,631 galaxyEnaQ2Ay-4,643 galaxyEnaQ2Ay-5,631 galaxyEnaQ2Ay-5,643 galaxyEnaQ2Ay-6,631 galaxyEnaQ2Ay-6,643 galaxyEnaQ3Ay-4,631 galaxyEnaQ3Ay-4,643 galaxyEnaQ3Ay-5,631 galaxyEnaQ3Ay-5,643 galaxyEnaQ3Ay-9,631 galaxyEnaQ3Ay-9,643 galaxyEnaQ3B-1-1-7,631 galaxyEnaQ3B-1-1-7,643 galaxyEnaQ3B-1-617-2,631 galaxyEnaQ3B-1-617-2,643 omicron articV4_1,40 pond,283 variantAaMuts_BA_2,1 variantAaMuts_BA_2,5 variantAaMuts_BA_2_12_1,1 variantAaMuts_BA_2_12_1,5 variantAaMuts_BA_2_75,1 variantAaMuts_BA_2_75,5 variantAaMuts_BA_2_86,1 variantAaMuts_BA_2_86,5 variantAaMuts_BA_4,1 variantAaMuts_BA_4,5 variantAaMuts_BA_5,1 variantAaMuts_BA_5,5 variantAaMuts_BQ_1,1 variantAaMuts_BQ_1,5 variantAaMuts_B_1_1_529,1 variantAaMuts_B_1_1_529,5 variantAaMuts_CH_1_1,1 variantAaMuts_CH_1_1,5 variantAaMuts_EG_5_1,1 variantAaMuts_EG_5_1,5 variantAaMuts_HK_3,1 variantAaMuts_HK_3,5 variantAaMuts_JN_1,1 variantAaMuts_JN_1,5 variantAaMuts_XBB,1 variantAaMuts_XBB,5 variantAaMuts_XBB_1_16,1 variantAaMuts_XBB_1_16,5 variantAaMuts_XBB_1_5,1 variantAaMuts_XBB_1_5,5 variantAaMuts_XBB_1_5_70,1 variantAaMuts_XBB_1_5_70,5 variantAaMuts_XBB_1_9,1 variantAaMuts_XBB_1_9,5 variantAaMuts_XBB_2_3,1 variantAaMuts_XBB_2_3,5 variantMuts,336 variantMuts,354 variantMuts,370 variantMuts,384 variantMuts,398 variantMuts,412 variantMuts,427 variantMuts,441 variantMuts,459 variantMuts,480 variantMuts,501 variantMuts,515 variantMuts,534 variantMuts,552 variantMuts,571 variantMuts,586 variantMuts,601 variantMuts,614 variantMuts,889 variantMuts,935 variantMuts,946 variantMuts,1108 variantMuts,1122 variantMuts,1132 variantMuts,1151 variantNucMuts_BA_2,1 variantNucMuts_BA_2,5 variantNucMuts_BA_2_12_1,1 variantNucMuts_BA_2_12_1,5 variantNucMuts_BA_2_75,1 variantNucMuts_BA_2_75,5 variantNucMuts_BA_2_86,1 variantNucMuts_BA_2_86,5 variantNucMuts_BA_4,1 variantNucMuts_BA_4,5 variantNucMuts_BA_5,1 variantNucMuts_BA_5,5 variantNucMuts_BQ_1,1 variantNucMuts_BQ_1,5 variantNucMuts_B_1_1_529,1 variantNucMuts_B_1_1_529,5 variantNucMuts_CH_1_1,1 variantNucMuts_CH_1_1,5 variantNucMuts_EG_5_1,1 variantNucMuts_EG_5_1,5 variantNucMuts_HK_3,1 variantNucMuts_HK_3,5 variantNucMuts_JN_1,1 variantNucMuts_JN_1,5 variantNucMuts_XBB,1 variantNucMuts_XBB,5 variantNucMuts_XBB_1_16,1 variantNucMuts_XBB_1_16,5 variantNucMuts_XBB_1_5,1 variantNucMuts_XBB_1_5,5 variantNucMuts_XBB_1_5_70,1 variantNucMuts_XBB_1_5_70,5 variantNucMuts_XBB_1_9,1 variantNucMuts_XBB_1_9,5 variantNucMuts_XBB_2_3,1 variantNucMuts_XBB_2_3,5 omission sarsCov2Phylo,771 on Calu3_07hpi,26 Calu3_07hpi,219 Calu3_07hpi,237 Calu3_07hpi,280 IgG_Z-score-_COVID-19_patients,46 IgG_Z-score-_COVID-19_patients,72 IgG_Z-score-_COVID-19_patients,87 IgG_Z-score-_COVID-19_patients,116 IgG_Z-score-_COVID-19_patients,137 IgG_Z-score-_COVID-19_patients,346 IgM_Z-score-_COVID-19_patients,46 IgM_Z-score-_COVID-19_patients,72 IgM_Z-score-_COVID-19_patients,87 IgM_Z-score-_COVID-19_patients,116 IgM_Z-score-_COVID-19_patients,137 IgM_Z-score-_COVID-19_patients,346 ORFs,24 ORFs,217 ORFs,235 ORFs,278 PhyloCSF_smooth,116 PhyloCSF_smooth,121 PhyloCSF_smooth,334 PhyloCSF_smooth,359 PhyloCSF_smooth,390 PhyloCSF_smooth,396 PhyloCSF_smooth,558 PhyloCSF_smooth,568 PhyloCSF_smooth,602 PhyloCSFpower,131 PhyloCSFpower,136 PhyloCSFpower,349 PhyloCSFpower,374 PhyloCSFpower,405 PhyloCSFpower,411 PhyloCSFpower,573 PhyloCSFpower,583 PhyloCSFpower,613 Q0_tracks,51 Q0_tracks,183 Q0_tracks,232 Q0_tracks,332 Q0_tracks,348 Q0_tracks,980 Q0_tracks,987 Q0_tracks,993 Q0_tracks,1010 Q0_tracks,1057 Q1_tracks,53 Q1_tracks,185 Q1_tracks,234 Q1_tracks,334 Q1_tracks,350 Q1_tracks,982 Q1_tracks,989 Q1_tracks,995 Q1_tracks,1012 Q1_tracks,1059 Q2_tracks,53 Q2_tracks,185 Q2_tracks,234 Q2_tracks,334 Q2_tracks,350 Q2_tracks,982 Q2_tracks,989 Q2_tracks,995 Q2_tracks,1012 Q2_tracks,1059 Q3_tracks,53 Q3_tracks,185 Q3_tracks,234 Q3_tracks,334 Q3_tracks,350 Q3_tracks,982 Q3_tracks,989 Q3_tracks,995 Q3_tracks,1012 Q3_tracks,1059 Starr_Bloom,64 Starr_Bloom,270 Starr_Bloom_bind,61 Starr_Bloom_bind,264 Vero6_05hpi,26 Vero6_05hpi,219 Vero6_05hpi,237 Vero6_05hpi,280 Vero6_24hpi,26 Vero6_24hpi,219 Vero6_24hpi,237 Vero6_24hpi,280 abEscape,218 abEscape,325 abEscape,329 abEscape,428 abEscape,563 addgene,94 addgene,111 addgene,132 addgene,254 artic,40 artic,129 articV4,43 articV4,129 articV4_1,54 articV4_1,142 augustusGene,29 augustusGene,37 augustusGene,151 bloomEscMabAvg,222 bloomEscMabAvg,329 bloomEscMabAvg,333 bloomEscMabAvg,432 bloomEscMabAvg,567 bloomEscMax,228 bloomEscMax,335 bloomEscMax,339 bloomEscMax,438 bloomEscMax,573 bloomEscSerumAvg,223 bloomEscSerumAvg,330 bloomEscSerumAvg,334 bloomEscSerumAvg,433 bloomEscSerumAvg,568 bloomEscTop,226 bloomEscTop,333 bloomEscTop,337 bloomEscTop,436 bloomEscTop,571 bpmIggCovidSum,55 bpmIggCovidSum,81 bpmIggCovidSum,96 bpmIggCovidSum,125 bpmIggCovidSum,146 bpmIggCovidSum,355 bpmIgmCovidSum,55 bpmIgmCovidSum,81 bpmIgmCovidSum,96 bpmIgmCovidSum,125 bpmIgmCovidSum,146 bpmIgmCovidSum,355 cas13Crispr,178 cas13Crispr,414 cd8escape,39 cd8escape,140 contacts,128 contacts,140 contacts,342 cpgIslandExt,287 cpgIslandExt,323 cpgIslandExt,544 cpgIslandExt,551 cpgIslandExtUnmasked,5 cpgIslandExtUnmasked,290 cpgIslandExtUnmasked,326 cpgIslandExtUnmasked,547 cpgIslandExtUnmasked,554 cpgIslandSuper,287 cpgIslandSuper,323 cpgIslandSuper,544 cpgIslandSuper,551 crisprDet,26 crisprDet,69 escape,225 escape,332 escape,336 escape,435 escape,570 galaxyEna,53 galaxyEna,185 galaxyEna,234 galaxyEna,334 galaxyEna,350 galaxyEna,982 galaxyEna,989 galaxyEna,995 galaxyEna,1012 galaxyEna,1059 galaxyEnaQ0Ba-1,49 galaxyEnaQ0Ba-1,181 galaxyEnaQ0Ba-1,230 galaxyEnaQ0Ba-1,330 galaxyEnaQ0Ba-1,346 galaxyEnaQ0Ba-1,978 galaxyEnaQ0Ba-1,985 galaxyEnaQ0Ba-1,991 galaxyEnaQ0Ba-1,1008 galaxyEnaQ0Ba-1,1055 galaxyEnaQ0Ba-1-1,49 galaxyEnaQ0Ba-1-1,181 galaxyEnaQ0Ba-1-1,230 galaxyEnaQ0Ba-1-1,330 galaxyEnaQ0Ba-1-1,346 galaxyEnaQ0Ba-1-1,978 galaxyEnaQ0Ba-1-1,985 galaxyEnaQ0Ba-1-1,991 galaxyEnaQ0Ba-1-1,1008 galaxyEnaQ0Ba-1-1,1055 galaxyEnaQ0Ba-1-1-11,49 galaxyEnaQ0Ba-1-1-11,181 galaxyEnaQ0Ba-1-1-11,230 galaxyEnaQ0Ba-1-1-11,330 galaxyEnaQ0Ba-1-1-11,346 galaxyEnaQ0Ba-1-1-11,978 galaxyEnaQ0Ba-1-1-11,985 galaxyEnaQ0Ba-1-1-11,991 galaxyEnaQ0Ba-1-1-11,1008 galaxyEnaQ0Ba-1-1-11,1055 galaxyEnaQ0Ba-1-17,49 galaxyEnaQ0Ba-1-17,181 galaxyEnaQ0Ba-1-17,230 galaxyEnaQ0Ba-1-17,330 galaxyEnaQ0Ba-1-17,346 galaxyEnaQ0Ba-1-17,978 galaxyEnaQ0Ba-1-17,985 galaxyEnaQ0Ba-1-17,991 galaxyEnaQ0Ba-1-17,1008 galaxyEnaQ0Ba-1-17,1055 galaxyEnaQ0Ba-2,49 galaxyEnaQ0Ba-2,181 galaxyEnaQ0Ba-2,230 galaxyEnaQ0Ba-2,330 galaxyEnaQ0Ba-2,346 galaxyEnaQ0Ba-2,978 galaxyEnaQ0Ba-2,985 galaxyEnaQ0Ba-2,991 galaxyEnaQ0Ba-2,1008 galaxyEnaQ0Ba-2,1055 galaxyEnaQ1Ay-4,49 galaxyEnaQ1Ay-4,181 galaxyEnaQ1Ay-4,230 galaxyEnaQ1Ay-4,330 galaxyEnaQ1Ay-4,346 galaxyEnaQ1Ay-4,978 galaxyEnaQ1Ay-4,985 galaxyEnaQ1Ay-4,991 galaxyEnaQ1Ay-4,1008 galaxyEnaQ1Ay-4,1055 galaxyEnaQ1Ay-4-2,49 galaxyEnaQ1Ay-4-2,181 galaxyEnaQ1Ay-4-2,230 galaxyEnaQ1Ay-4-2,330 galaxyEnaQ1Ay-4-2,346 galaxyEnaQ1Ay-4-2,978 galaxyEnaQ1Ay-4-2,985 galaxyEnaQ1Ay-4-2,991 galaxyEnaQ1Ay-4-2,1008 galaxyEnaQ1Ay-4-2,1055 galaxyEnaQ1Ay-4-2-2,49 galaxyEnaQ1Ay-4-2-2,181 galaxyEnaQ1Ay-4-2-2,230 galaxyEnaQ1Ay-4-2-2,330 galaxyEnaQ1Ay-4-2-2,346 galaxyEnaQ1Ay-4-2-2,978 galaxyEnaQ1Ay-4-2-2,985 galaxyEnaQ1Ay-4-2-2,991 galaxyEnaQ1Ay-4-2-2,1008 galaxyEnaQ1Ay-4-2-2,1055 galaxyEnaQ1Ay-43,49 galaxyEnaQ1Ay-43,181 galaxyEnaQ1Ay-43,230 galaxyEnaQ1Ay-43,330 galaxyEnaQ1Ay-43,346 galaxyEnaQ1Ay-43,978 galaxyEnaQ1Ay-43,985 galaxyEnaQ1Ay-43,991 galaxyEnaQ1Ay-43,1008 galaxyEnaQ1Ay-43,1055 galaxyEnaQ1Ba-1-17,49 galaxyEnaQ1Ba-1-17,181 galaxyEnaQ1Ba-1-17,230 galaxyEnaQ1Ba-1-17,330 galaxyEnaQ1Ba-1-17,346 galaxyEnaQ1Ba-1-17,978 galaxyEnaQ1Ba-1-17,985 galaxyEnaQ1Ba-1-17,991 galaxyEnaQ1Ba-1-17,1008 galaxyEnaQ1Ba-1-17,1055 galaxyEnaQ2Ay-120,49 galaxyEnaQ2Ay-120,181 galaxyEnaQ2Ay-120,230 galaxyEnaQ2Ay-120,330 galaxyEnaQ2Ay-120,346 galaxyEnaQ2Ay-120,978 galaxyEnaQ2Ay-120,985 galaxyEnaQ2Ay-120,991 galaxyEnaQ2Ay-120,1008 galaxyEnaQ2Ay-120,1055 galaxyEnaQ2Ay-122,49 galaxyEnaQ2Ay-122,181 galaxyEnaQ2Ay-122,230 galaxyEnaQ2Ay-122,330 galaxyEnaQ2Ay-122,346 galaxyEnaQ2Ay-122,978 galaxyEnaQ2Ay-122,985 galaxyEnaQ2Ay-122,991 galaxyEnaQ2Ay-122,1008 galaxyEnaQ2Ay-122,1055 galaxyEnaQ2Ay-4,49 galaxyEnaQ2Ay-4,181 galaxyEnaQ2Ay-4,230 galaxyEnaQ2Ay-4,330 galaxyEnaQ2Ay-4,346 galaxyEnaQ2Ay-4,978 galaxyEnaQ2Ay-4,985 galaxyEnaQ2Ay-4,991 galaxyEnaQ2Ay-4,1008 galaxyEnaQ2Ay-4,1055 galaxyEnaQ2Ay-5,49 galaxyEnaQ2Ay-5,181 galaxyEnaQ2Ay-5,230 galaxyEnaQ2Ay-5,330 galaxyEnaQ2Ay-5,346 galaxyEnaQ2Ay-5,978 galaxyEnaQ2Ay-5,985 galaxyEnaQ2Ay-5,991 galaxyEnaQ2Ay-5,1008 galaxyEnaQ2Ay-5,1055 galaxyEnaQ2Ay-6,49 galaxyEnaQ2Ay-6,181 galaxyEnaQ2Ay-6,230 galaxyEnaQ2Ay-6,330 galaxyEnaQ2Ay-6,346 galaxyEnaQ2Ay-6,978 galaxyEnaQ2Ay-6,985 galaxyEnaQ2Ay-6,991 galaxyEnaQ2Ay-6,1008 galaxyEnaQ2Ay-6,1055 galaxyEnaQ3Ay-4,49 galaxyEnaQ3Ay-4,181 galaxyEnaQ3Ay-4,230 galaxyEnaQ3Ay-4,330 galaxyEnaQ3Ay-4,346 galaxyEnaQ3Ay-4,978 galaxyEnaQ3Ay-4,985 galaxyEnaQ3Ay-4,991 galaxyEnaQ3Ay-4,1008 galaxyEnaQ3Ay-4,1055 galaxyEnaQ3Ay-5,49 galaxyEnaQ3Ay-5,181 galaxyEnaQ3Ay-5,230 galaxyEnaQ3Ay-5,330 galaxyEnaQ3Ay-5,346 galaxyEnaQ3Ay-5,978 galaxyEnaQ3Ay-5,985 galaxyEnaQ3Ay-5,991 galaxyEnaQ3Ay-5,1008 galaxyEnaQ3Ay-5,1055 galaxyEnaQ3Ay-9,49 galaxyEnaQ3Ay-9,181 galaxyEnaQ3Ay-9,230 galaxyEnaQ3Ay-9,330 galaxyEnaQ3Ay-9,346 galaxyEnaQ3Ay-9,978 galaxyEnaQ3Ay-9,985 galaxyEnaQ3Ay-9,991 galaxyEnaQ3Ay-9,1008 galaxyEnaQ3Ay-9,1055 galaxyEnaQ3B-1-1-7,49 galaxyEnaQ3B-1-1-7,181 galaxyEnaQ3B-1-1-7,230 galaxyEnaQ3B-1-1-7,330 galaxyEnaQ3B-1-1-7,346 galaxyEnaQ3B-1-1-7,978 galaxyEnaQ3B-1-1-7,985 galaxyEnaQ3B-1-1-7,991 galaxyEnaQ3B-1-1-7,1008 galaxyEnaQ3B-1-1-7,1055 galaxyEnaQ3B-1-617-2,49 galaxyEnaQ3B-1-617-2,181 galaxyEnaQ3B-1-617-2,230 galaxyEnaQ3B-1-617-2,330 galaxyEnaQ3B-1-617-2,346 galaxyEnaQ3B-1-617-2,978 galaxyEnaQ3B-1-617-2,985 galaxyEnaQ3B-1-617-2,991 galaxyEnaQ3B-1-617-2,1008 galaxyEnaQ3B-1-617-2,1055 gap,85 genscan,27 genscan,52 gordon2,85 icshape,58 iedb,46 iedb,82 kimIvtCov,51 kimIvtCov,66 kimRnaMod,58 kimRnaMod,176 kimTranscripts,31 kimTranscripts,89 kimTranscripts,163 kimTranscripts,393 mccoy,8 mccoy,218 mccoy,325 mccoy,329 mccoy,428 mccoy,563 microdel,79 multiz7way,249 multiz7way,293 multiz7way,345 multiz7way,543 multiz7way,745 multiz7way,1022 ncbiGeneBGP,114 ncbiProducts,51 ncbiProducts,130 nextstrainClade,106 nextstrainParsimony,161 nextstrainParsimony,176 nextstrainParsimony,197 nextstrainSamples,109 nextstrainSamples,782 pbm,55 pbm,81 pbm,96 pbm,125 pbm,146 pbm,355 pbmShanghai,55 pbmShanghai,153 pbmShanghai,182 pbmShanghai,223 pbmShanghai,349 pbmShanghai,472 pdb,76 pdb,96 phyloGenes,390 pond,99 pond,146 poranHla1,108 poranHla1,203 poranHla2,108 poranHla2,203 problematicSites,468 publicAnnots,86 rapid,167 rapid,216 rapid,283 rappuoli,225 rappuoli,332 rappuoli,336 rappuoli,435 rappuoli,570 recomb,67 recomb,133 recomb,181 recomb,230 recomb,261 resist,69 resistPred,113 resistPred,172 resistPred,268 rfam,99 rosettaMhc,124 sarsCov2Phylo,207 sarsCov2Phylo,215 sarsCov2Phylo,235 sarsCov2Phylo,242 sarsCov2Phylo,548 sarsCov2Phylo,561 sarsCov2Phylo,572 sarsCov2Phylo,655 sarsCov2PhyloPub,214 sarsCov2PhyloPub,222 sarsCov2PhyloPub,242 sarsCov2PhyloPub,249 sarsCov2PhyloPub,373 sarsCov2PhyloPub,573 sarsCov2PhyloPub,586 sarsCov2PhyloPub,597 sarsCov2PhyloPub,679 sarsCov2PhyloPub,955 sarsCov2PhyloPub,1239 spikeMuts,103 spikeMuts,379 strainCons119way,191 strainCons119way,270 strainCons119way,430 strainCons119way,598 strainCons119way,663 strainCons119way,687 strainCons119way,893 strainCons119way,1505 strainCons119way,1680 strainCons119way,1793 strainCons119way,1935 strainCons119way,2171 strainCons119way,2400 strainCons44way,139 strainCons44way,218 strainCons44way,378 strainCons44way,546 strainCons44way,611 strainCons44way,635 strainCons44way,841 strainCons44way,1175 strainCons44way,1275 strainCons44way,1388 strainCons44way,1530 strainCons44way,1766 strainCons44way,1995 swift,104 swift,212 transcriptome,23 transcriptome,81 transcriptome,212 transcriptome,399 unipCov2AliSwissprot,108 unipCov2AliSwissprot,211 unipCov2AliSwissprot,258 unipCov2AliSwissprot,495 unipCov2Chain,50 unipCov2Chain,117 unipCov2Chain,293 unipCov2Chain,464 unipCov2Chain,488 unipCov2Chain,724 unipCov2DisulfBond,46 unipCov2DisulfBond,113 unipCov2DisulfBond,289 unipCov2DisulfBond,460 unipCov2DisulfBond,484 unipCov2DisulfBond,720 unipCov2Domain,45 unipCov2Domain,112 unipCov2Domain,288 unipCov2Domain,459 unipCov2Domain,483 unipCov2Domain,719 unipCov2Interest,62 unipCov2Interest,140 unipCov2Interest,164 unipCov2Interest,378 unipCov2LocCytopl,45 unipCov2LocCytopl,112 unipCov2LocCytopl,288 unipCov2LocCytopl,459 unipCov2LocCytopl,483 unipCov2LocCytopl,719 unipCov2LocExtra,45 unipCov2LocExtra,112 unipCov2LocExtra,288 unipCov2LocExtra,459 unipCov2LocExtra,483 unipCov2LocExtra,719 unipCov2LocSignal,46 unipCov2LocSignal,113 unipCov2LocSignal,289 unipCov2LocSignal,460 unipCov2LocSignal,484 unipCov2LocSignal,720 unipCov2LocTransMemb,46 unipCov2LocTransMemb,113 unipCov2LocTransMemb,289 unipCov2LocTransMemb,460 unipCov2LocTransMemb,484 unipCov2LocTransMemb,720 unipCov2Modif,49 unipCov2Modif,116 unipCov2Modif,292 unipCov2Modif,463 unipCov2Modif,487 unipCov2Modif,723 unipCov2Mut,46 unipCov2Mut,113 unipCov2Mut,289 unipCov2Mut,460 unipCov2Mut,484 unipCov2Mut,720 unipCov2Other,46 unipCov2Other,113 unipCov2Other,289 unipCov2Other,460 unipCov2Other,484 unipCov2Other,720 unipCov2Repeat,44 unipCov2Repeat,111 unipCov2Repeat,287 unipCov2Repeat,458 unipCov2Repeat,482 unipCov2Repeat,718 unipCov2Struct,48 unipCov2Struct,115 unipCov2Struct,291 unipCov2Struct,462 unipCov2Struct,486 unipCov2Struct,722 variantMuts,91 variantMuts,228 variantMuts,860 varskip,135 weizmanOrfs,6 weizmanOrfs,32 weizmanOrfs,225 weizmanOrfs,243 weizmanOrfs,286 once nextstrainParsimony,160 one Calu3_07hpi,126 IgG_Z-score-_COVID-19_patients,200 IgM_Z-score-_COVID-19_patients,200 ORFs,124 PhyloCSF_smooth,89 PhyloCSF_smooth,442 PhyloCSFpower,104 PhyloCSFpower,457 Q0_tracks,827 Q0_tracks,844 Q0_tracks,850 Q0_tracks,877 Q1_tracks,829 Q1_tracks,846 Q1_tracks,852 Q1_tracks,879 Q2_tracks,829 Q2_tracks,846 Q2_tracks,852 Q2_tracks,879 Q3_tracks,829 Q3_tracks,846 Q3_tracks,852 Q3_tracks,879 Vero6_05hpi,126 Vero6_24hpi,126 abEscape,191 abEscape,383 abEscape,434 abEscape,473 augustusGene,169 bloomEscMabAvg,195 bloomEscMabAvg,387 bloomEscMabAvg,438 bloomEscMabAvg,477 bloomEscMax,201 bloomEscMax,393 bloomEscMax,444 bloomEscMax,483 bloomEscSerumAvg,196 bloomEscSerumAvg,388 bloomEscSerumAvg,439 bloomEscSerumAvg,478 bloomEscTop,199 bloomEscTop,391 bloomEscTop,442 bloomEscTop,481 bpmIggCovidSum,209 bpmIgmCovidSum,209 cpgIslandExt,233 cpgIslandExtUnmasked,236 cpgIslandSuper,233 crisprDet,31 crisprDet,98 escape,198 escape,390 escape,441 escape,480 galaxyEna,829 galaxyEna,846 galaxyEna,852 galaxyEna,879 galaxyEnaQ0Ba-1,825 galaxyEnaQ0Ba-1,842 galaxyEnaQ0Ba-1,848 galaxyEnaQ0Ba-1,875 galaxyEnaQ0Ba-1-1,825 galaxyEnaQ0Ba-1-1,842 galaxyEnaQ0Ba-1-1,848 galaxyEnaQ0Ba-1-1,875 galaxyEnaQ0Ba-1-1-11,825 galaxyEnaQ0Ba-1-1-11,842 galaxyEnaQ0Ba-1-1-11,848 galaxyEnaQ0Ba-1-1-11,875 galaxyEnaQ0Ba-1-17,825 galaxyEnaQ0Ba-1-17,842 galaxyEnaQ0Ba-1-17,848 galaxyEnaQ0Ba-1-17,875 galaxyEnaQ0Ba-2,825 galaxyEnaQ0Ba-2,842 galaxyEnaQ0Ba-2,848 galaxyEnaQ0Ba-2,875 galaxyEnaQ1Ay-4,825 galaxyEnaQ1Ay-4,842 galaxyEnaQ1Ay-4,848 galaxyEnaQ1Ay-4,875 galaxyEnaQ1Ay-4-2,825 galaxyEnaQ1Ay-4-2,842 galaxyEnaQ1Ay-4-2,848 galaxyEnaQ1Ay-4-2,875 galaxyEnaQ1Ay-4-2-2,825 galaxyEnaQ1Ay-4-2-2,842 galaxyEnaQ1Ay-4-2-2,848 galaxyEnaQ1Ay-4-2-2,875 galaxyEnaQ1Ay-43,825 galaxyEnaQ1Ay-43,842 galaxyEnaQ1Ay-43,848 galaxyEnaQ1Ay-43,875 galaxyEnaQ1Ba-1-17,825 galaxyEnaQ1Ba-1-17,842 galaxyEnaQ1Ba-1-17,848 galaxyEnaQ1Ba-1-17,875 galaxyEnaQ2Ay-120,825 galaxyEnaQ2Ay-120,842 galaxyEnaQ2Ay-120,848 galaxyEnaQ2Ay-120,875 galaxyEnaQ2Ay-122,825 galaxyEnaQ2Ay-122,842 galaxyEnaQ2Ay-122,848 galaxyEnaQ2Ay-122,875 galaxyEnaQ2Ay-4,825 galaxyEnaQ2Ay-4,842 galaxyEnaQ2Ay-4,848 galaxyEnaQ2Ay-4,875 galaxyEnaQ2Ay-5,825 galaxyEnaQ2Ay-5,842 galaxyEnaQ2Ay-5,848 galaxyEnaQ2Ay-5,875 galaxyEnaQ2Ay-6,825 galaxyEnaQ2Ay-6,842 galaxyEnaQ2Ay-6,848 galaxyEnaQ2Ay-6,875 galaxyEnaQ3Ay-4,825 galaxyEnaQ3Ay-4,842 galaxyEnaQ3Ay-4,848 galaxyEnaQ3Ay-4,875 galaxyEnaQ3Ay-5,825 galaxyEnaQ3Ay-5,842 galaxyEnaQ3Ay-5,848 galaxyEnaQ3Ay-5,875 galaxyEnaQ3Ay-9,825 galaxyEnaQ3Ay-9,842 galaxyEnaQ3Ay-9,848 galaxyEnaQ3Ay-9,875 galaxyEnaQ3B-1-1-7,825 galaxyEnaQ3B-1-1-7,842 galaxyEnaQ3B-1-1-7,848 galaxyEnaQ3B-1-1-7,875 galaxyEnaQ3B-1-617-2,825 galaxyEnaQ3B-1-617-2,842 galaxyEnaQ3B-1-617-2,848 galaxyEnaQ3B-1-617-2,875 kimRnaMod,61 kimRnaMod,107 kimTranscripts,60 mccoy,191 mccoy,383 mccoy,434 mccoy,473 multiz7way,447 nextstrainParsimony,170 nextstrainSamples,258 nextstrainSamples,267 nextstrainSamples,292 pbm,209 pbmShanghai,268 potPathoIndel,192 primers,77 primers,79 primers,82 primers,180 problematicSites,73 problematicSites,291 problematicSites,436 rapid,67 rapid,175 rappuoli,198 rappuoli,390 rappuoli,441 rappuoli,480 resistPred,134 sarsCov2Phylo,1135 sarsCov2PhyloPub,1268 strainCons119way,797 strainCons119way,1822 strainCons44way,745 strainCons44way,1417 swift,112 transcriptome,52 transcriptome,139 treangen,31 treangen,129 treangen,227 variantMuts,1050 weizmanOrfs,132 oneoff primers,299 ones abEscape,418 bloomEscMabAvg,422 bloomEscMax,428 bloomEscSerumAvg,423 bloomEscTop,426 escape,425 mccoy,418 rappuoli,425 ongoing nextstrainFreq,55 nextstrainParsimony,72 online cas13Crispr,118 rosettaMhc,116 only Calu3_07hpi,42 IgG_Z-score-_COVID-19_patients,114 IgM_Z-score-_COVID-19_patients,114 ORFs,40 PhyloCSF_smooth,508 PhyloCSFpower,523 Q0_tracks,188 Q0_tracks,714 Q0_tracks,731 Q0_tracks,784 Q1_tracks,190 Q1_tracks,716 Q1_tracks,733 Q1_tracks,786 Q2_tracks,190 Q2_tracks,716 Q2_tracks,733 Q2_tracks,786 Q3_tracks,190 Q3_tracks,716 Q3_tracks,733 Q3_tracks,786 Vero6_05hpi,42 Vero6_24hpi,42 bpmIggCovidSum,123 bpmIgmCovidSum,123 cpgIslandExt,196 cpgIslandExtUnmasked,199 cpgIslandSuper,196 galaxyEna,190 galaxyEna,716 galaxyEna,733 galaxyEna,786 galaxyEnaQ0Ba-1,186 galaxyEnaQ0Ba-1,712 galaxyEnaQ0Ba-1,729 galaxyEnaQ0Ba-1,782 galaxyEnaQ0Ba-1-1,186 galaxyEnaQ0Ba-1-1,712 galaxyEnaQ0Ba-1-1,729 galaxyEnaQ0Ba-1-1,782 galaxyEnaQ0Ba-1-1-11,186 galaxyEnaQ0Ba-1-1-11,712 galaxyEnaQ0Ba-1-1-11,729 galaxyEnaQ0Ba-1-1-11,782 galaxyEnaQ0Ba-1-17,186 galaxyEnaQ0Ba-1-17,712 galaxyEnaQ0Ba-1-17,729 galaxyEnaQ0Ba-1-17,782 galaxyEnaQ0Ba-2,186 galaxyEnaQ0Ba-2,712 galaxyEnaQ0Ba-2,729 galaxyEnaQ0Ba-2,782 galaxyEnaQ1Ay-4,186 galaxyEnaQ1Ay-4,712 galaxyEnaQ1Ay-4,729 galaxyEnaQ1Ay-4,782 galaxyEnaQ1Ay-4-2,186 galaxyEnaQ1Ay-4-2,712 galaxyEnaQ1Ay-4-2,729 galaxyEnaQ1Ay-4-2,782 galaxyEnaQ1Ay-4-2-2,186 galaxyEnaQ1Ay-4-2-2,712 galaxyEnaQ1Ay-4-2-2,729 galaxyEnaQ1Ay-4-2-2,782 galaxyEnaQ1Ay-43,186 galaxyEnaQ1Ay-43,712 galaxyEnaQ1Ay-43,729 galaxyEnaQ1Ay-43,782 galaxyEnaQ1Ba-1-17,186 galaxyEnaQ1Ba-1-17,712 galaxyEnaQ1Ba-1-17,729 galaxyEnaQ1Ba-1-17,782 galaxyEnaQ2Ay-120,186 galaxyEnaQ2Ay-120,712 galaxyEnaQ2Ay-120,729 galaxyEnaQ2Ay-120,782 galaxyEnaQ2Ay-122,186 galaxyEnaQ2Ay-122,712 galaxyEnaQ2Ay-122,729 galaxyEnaQ2Ay-122,782 galaxyEnaQ2Ay-4,186 galaxyEnaQ2Ay-4,712 galaxyEnaQ2Ay-4,729 galaxyEnaQ2Ay-4,782 galaxyEnaQ2Ay-5,186 galaxyEnaQ2Ay-5,712 galaxyEnaQ2Ay-5,729 galaxyEnaQ2Ay-5,782 galaxyEnaQ2Ay-6,186 galaxyEnaQ2Ay-6,712 galaxyEnaQ2Ay-6,729 galaxyEnaQ2Ay-6,782 galaxyEnaQ3Ay-4,186 galaxyEnaQ3Ay-4,712 galaxyEnaQ3Ay-4,729 galaxyEnaQ3Ay-4,782 galaxyEnaQ3Ay-5,186 galaxyEnaQ3Ay-5,712 galaxyEnaQ3Ay-5,729 galaxyEnaQ3Ay-5,782 galaxyEnaQ3Ay-9,186 galaxyEnaQ3Ay-9,712 galaxyEnaQ3Ay-9,729 galaxyEnaQ3Ay-9,782 galaxyEnaQ3B-1-1-7,186 galaxyEnaQ3B-1-1-7,712 galaxyEnaQ3B-1-1-7,729 galaxyEnaQ3B-1-1-7,782 galaxyEnaQ3B-1-617-2,186 galaxyEnaQ3B-1-617-2,712 galaxyEnaQ3B-1-617-2,729 galaxyEnaQ3B-1-617-2,782 gordon2,142 iedb,38 multiz7way,516 nextstrainSamples,232 pbm,123 pbmShanghai,180 pdb,113 potPathoIndel,191 problematicSites,290 problematicSites,341 problematicSites,389 problematicSites,435 publicAnnots,71 sarsCov2Phylo,42 sarsCov2Phylo,113 sarsCov2Phylo,478 sarsCov2Phylo,785 sarsCov2PhyloPub,56 sarsCov2PhyloPub,126 sarsCov2PhyloPub,507 sarsCov2PhyloPub,718 strainCons119way,866 strainCons44way,814 transcriptome,236 unipCov2AliSwissprot,228 unipCov2AliSwissprot,355 unipCov2Chain,585 unipCov2DisulfBond,581 unipCov2Domain,580 unipCov2Interest,261 unipCov2LocCytopl,580 unipCov2LocExtra,580 unipCov2LocSignal,581 unipCov2LocTransMemb,581 unipCov2Modif,584 unipCov2Mut,581 unipCov2Other,581 unipCov2Repeat,579 unipCov2Struct,583 vaccines,247 variantMuts,163 weizmanOrfs,48 ont Q0_tracks,116 Q0_tracks,852 Q1_tracks,118 Q1_tracks,854 Q2_tracks,118 Q2_tracks,854 Q3_tracks,118 Q3_tracks,854 galaxyEna,118 galaxyEna,854 galaxyEnaQ0Ba-1,114 galaxyEnaQ0Ba-1,850 galaxyEnaQ0Ba-1-1,114 galaxyEnaQ0Ba-1-1,850 galaxyEnaQ0Ba-1-1-11,114 galaxyEnaQ0Ba-1-1-11,850 galaxyEnaQ0Ba-1-17,114 galaxyEnaQ0Ba-1-17,850 galaxyEnaQ0Ba-2,114 galaxyEnaQ0Ba-2,850 galaxyEnaQ1Ay-4,114 galaxyEnaQ1Ay-4,850 galaxyEnaQ1Ay-4-2,114 galaxyEnaQ1Ay-4-2,850 galaxyEnaQ1Ay-4-2-2,114 galaxyEnaQ1Ay-4-2-2,850 galaxyEnaQ1Ay-43,114 galaxyEnaQ1Ay-43,850 galaxyEnaQ1Ba-1-17,114 galaxyEnaQ1Ba-1-17,850 galaxyEnaQ2Ay-120,114 galaxyEnaQ2Ay-120,850 galaxyEnaQ2Ay-122,114 galaxyEnaQ2Ay-122,850 galaxyEnaQ2Ay-4,114 galaxyEnaQ2Ay-4,850 galaxyEnaQ2Ay-5,114 galaxyEnaQ2Ay-5,850 galaxyEnaQ2Ay-6,114 galaxyEnaQ2Ay-6,850 galaxyEnaQ3Ay-4,114 galaxyEnaQ3Ay-4,850 galaxyEnaQ3Ay-5,114 galaxyEnaQ3Ay-5,850 galaxyEnaQ3Ay-9,114 galaxyEnaQ3Ay-9,850 galaxyEnaQ3B-1-1-7,114 galaxyEnaQ3B-1-1-7,850 galaxyEnaQ3B-1-617-2,114 galaxyEnaQ3B-1-617-2,850 onto IgG_Z-score-_COVID-19_patients,110 IgM_Z-score-_COVID-19_patients,110 Q0_tracks,826 Q1_tracks,828 Q2_tracks,828 Q3_tracks,828 bpmIggCovidSum,119 bpmIgmCovidSum,119 galaxyEna,828 galaxyEnaQ0Ba-1,824 galaxyEnaQ0Ba-1-1,824 galaxyEnaQ0Ba-1-1-11,824 galaxyEnaQ0Ba-1-17,824 galaxyEnaQ0Ba-2,824 galaxyEnaQ1Ay-4,824 galaxyEnaQ1Ay-4-2,824 galaxyEnaQ1Ay-4-2-2,824 galaxyEnaQ1Ay-43,824 galaxyEnaQ1Ba-1-17,824 galaxyEnaQ2Ay-120,824 galaxyEnaQ2Ay-122,824 galaxyEnaQ2Ay-4,824 galaxyEnaQ2Ay-5,824 galaxyEnaQ2Ay-6,824 galaxyEnaQ3Ay-4,824 galaxyEnaQ3Ay-5,824 galaxyEnaQ3Ay-9,824 galaxyEnaQ3B-1-1-7,824 galaxyEnaQ3B-1-617-2,824 pbm,119 pbmShanghai,176 recomb,201 unipCov2Chain,69 unipCov2Chain,91 unipCov2DisulfBond,65 unipCov2DisulfBond,87 unipCov2Domain,64 unipCov2Domain,86 unipCov2LocCytopl,64 unipCov2LocCytopl,86 unipCov2LocExtra,64 unipCov2LocExtra,86 unipCov2LocSignal,65 unipCov2LocSignal,87 unipCov2LocTransMemb,65 unipCov2LocTransMemb,87 unipCov2Modif,68 unipCov2Modif,90 unipCov2Mut,65 unipCov2Mut,87 unipCov2Other,65 unipCov2Other,87 unipCov2Repeat,63 unipCov2Repeat,85 unipCov2Struct,67 unipCov2Struct,89 open Calu3_07hpi,16 ORFs,14 Q0_tracks,37 Q0_tracks,1284 Q0_tracks,1287 Q1_tracks,39 Q1_tracks,1286 Q1_tracks,1289 Q2_tracks,39 Q2_tracks,1286 Q2_tracks,1289 Q3_tracks,39 Q3_tracks,1286 Q3_tracks,1289 Vero6_05hpi,16 Vero6_24hpi,16 galaxyEna,39 galaxyEna,1286 galaxyEna,1289 galaxyEnaQ0Ba-1,35 galaxyEnaQ0Ba-1,1282 galaxyEnaQ0Ba-1,1285 galaxyEnaQ0Ba-1-1,35 galaxyEnaQ0Ba-1-1,1282 galaxyEnaQ0Ba-1-1,1285 galaxyEnaQ0Ba-1-1-11,35 galaxyEnaQ0Ba-1-1-11,1282 galaxyEnaQ0Ba-1-1-11,1285 galaxyEnaQ0Ba-1-17,35 galaxyEnaQ0Ba-1-17,1282 galaxyEnaQ0Ba-1-17,1285 galaxyEnaQ0Ba-2,35 galaxyEnaQ0Ba-2,1282 galaxyEnaQ0Ba-2,1285 galaxyEnaQ1Ay-4,35 galaxyEnaQ1Ay-4,1282 galaxyEnaQ1Ay-4,1285 galaxyEnaQ1Ay-4-2,35 galaxyEnaQ1Ay-4-2,1282 galaxyEnaQ1Ay-4-2,1285 galaxyEnaQ1Ay-4-2-2,35 galaxyEnaQ1Ay-4-2-2,1282 galaxyEnaQ1Ay-4-2-2,1285 galaxyEnaQ1Ay-43,35 galaxyEnaQ1Ay-43,1282 galaxyEnaQ1Ay-43,1285 galaxyEnaQ1Ba-1-17,35 galaxyEnaQ1Ba-1-17,1282 galaxyEnaQ1Ba-1-17,1285 galaxyEnaQ2Ay-120,35 galaxyEnaQ2Ay-120,1282 galaxyEnaQ2Ay-120,1285 galaxyEnaQ2Ay-122,35 galaxyEnaQ2Ay-122,1282 galaxyEnaQ2Ay-122,1285 galaxyEnaQ2Ay-4,35 galaxyEnaQ2Ay-4,1282 galaxyEnaQ2Ay-4,1285 galaxyEnaQ2Ay-5,35 galaxyEnaQ2Ay-5,1282 galaxyEnaQ2Ay-5,1285 galaxyEnaQ2Ay-6,35 galaxyEnaQ2Ay-6,1282 galaxyEnaQ2Ay-6,1285 galaxyEnaQ3Ay-4,35 galaxyEnaQ3Ay-4,1282 galaxyEnaQ3Ay-4,1285 galaxyEnaQ3Ay-5,35 galaxyEnaQ3Ay-5,1282 galaxyEnaQ3Ay-5,1285 galaxyEnaQ3Ay-9,35 galaxyEnaQ3Ay-9,1282 galaxyEnaQ3Ay-9,1285 galaxyEnaQ3B-1-1-7,35 galaxyEnaQ3B-1-1-7,1282 galaxyEnaQ3B-1-1-7,1285 galaxyEnaQ3B-1-617-2,35 galaxyEnaQ3B-1-617-2,1282 galaxyEnaQ3B-1-617-2,1285 nextstrainParsimony,412 nextstrainSamples,889 sarsCov2Phylo,825 sarsCov2PhyloPub,908 variantMuts,1171 weizmanOrfs,22 open-source Q0_tracks,189 Q1_tracks,191 Q2_tracks,191 Q3_tracks,191 galaxyEna,191 galaxyEnaQ0Ba-1,187 galaxyEnaQ0Ba-1-1,187 galaxyEnaQ0Ba-1-1-11,187 galaxyEnaQ0Ba-1-17,187 galaxyEnaQ0Ba-2,187 galaxyEnaQ1Ay-4,187 galaxyEnaQ1Ay-4-2,187 galaxyEnaQ1Ay-4-2-2,187 galaxyEnaQ1Ay-43,187 galaxyEnaQ1Ba-1-17,187 galaxyEnaQ2Ay-120,187 galaxyEnaQ2Ay-122,187 galaxyEnaQ2Ay-4,187 galaxyEnaQ2Ay-5,187 galaxyEnaQ2Ay-6,187 galaxyEnaQ3Ay-4,187 galaxyEnaQ3Ay-5,187 galaxyEnaQ3Ay-9,187 galaxyEnaQ3B-1-1-7,187 galaxyEnaQ3B-1-617-2,187 opencovid19 primers,39 primers,390 option augustusGene,167 augustusGene,187 genscan,94 strainCons119way,2016 strainCons119way,2033 strainCons119way,2077 strainCons44way,1611 strainCons44way,1628 strainCons44way,1672 options gc5BaseBw,70 genscan,85 nextstrainParsimony,402 nextstrainSamples,731 nextstrainSamples,844 sarsCov2Phylo,124 or Calu3_07hpi,146 Calu3_07hpi,318 Calu3_07hpi,337 IgG_Z-score-_COVID-19_patients,294 IgG_Z-score-_COVID-19_patients,393 IgM_Z-score-_COVID-19_patients,294 IgM_Z-score-_COVID-19_patients,393 ORFs,144 ORFs,316 ORFs,335 PhyloCSF_smooth,314 PhyloCSF_smooth,584 PhyloCSF_smooth,646 PhyloCSF_smooth,662 PhyloCSFpower,329 PhyloCSFpower,599 Q0_tracks,78 Q0_tracks,462 Q0_tracks,550 Q0_tracks,682 Q0_tracks,762 Q1_tracks,80 Q1_tracks,464 Q1_tracks,552 Q1_tracks,684 Q1_tracks,764 Q2_tracks,80 Q2_tracks,464 Q2_tracks,552 Q2_tracks,684 Q2_tracks,764 Q3_tracks,80 Q3_tracks,464 Q3_tracks,552 Q3_tracks,684 Q3_tracks,764 Starr_Bloom,32 Starr_Bloom,69 Starr_Bloom,210 Starr_Bloom,229 Starr_Bloom_bind,204 Starr_Bloom_bind,223 Vero6_05hpi,146 Vero6_05hpi,318 Vero6_05hpi,337 Vero6_24hpi,146 Vero6_24hpi,318 Vero6_24hpi,337 abEscape,6 abEscape,31 abEscape,98 abEscape,402 abEscape,520 abEscape,555 abEscape,662 abEscape,681 artic,77 artic,175 articV4,77 articV4,175 articV4_1,90 articV4_1,188 bloomEscMabAvg,35 bloomEscMabAvg,102 bloomEscMabAvg,406 bloomEscMabAvg,524 bloomEscMabAvg,559 bloomEscMabAvg,666 bloomEscMabAvg,685 bloomEscMax,41 bloomEscMax,108 bloomEscMax,412 bloomEscMax,530 bloomEscMax,565 bloomEscMax,672 bloomEscMax,691 bloomEscSerumAvg,36 bloomEscSerumAvg,103 bloomEscSerumAvg,407 bloomEscSerumAvg,525 bloomEscSerumAvg,560 bloomEscSerumAvg,667 bloomEscSerumAvg,686 bloomEscTop,39 bloomEscTop,106 bloomEscTop,410 bloomEscTop,528 bloomEscTop,563 bloomEscTop,670 bloomEscTop,689 bpmIggCovidSum,303 bpmIggCovidSum,402 bpmIgmCovidSum,303 bpmIgmCovidSum,402 cas13Crispr,70 cas13Crispr,297 cas13Crispr,362 cas13Crispr,460 contacts,177 contacts,267 contacts,290 contacts,388 cpgIslandExt,127 cpgIslandExt,266 cpgIslandExt,523 cpgIslandExtUnmasked,130 cpgIslandExtUnmasked,269 cpgIslandExtUnmasked,526 cpgIslandSuper,127 cpgIslandSuper,266 cpgIslandSuper,523 escape,38 escape,105 escape,409 escape,527 escape,562 escape,669 escape,688 galaxyEna,80 galaxyEna,464 galaxyEna,552 galaxyEna,684 galaxyEna,764 galaxyEnaQ0Ba-1,76 galaxyEnaQ0Ba-1,460 galaxyEnaQ0Ba-1,548 galaxyEnaQ0Ba-1,680 galaxyEnaQ0Ba-1,760 galaxyEnaQ0Ba-1-1,76 galaxyEnaQ0Ba-1-1,460 galaxyEnaQ0Ba-1-1,548 galaxyEnaQ0Ba-1-1,680 galaxyEnaQ0Ba-1-1,760 galaxyEnaQ0Ba-1-1-11,76 galaxyEnaQ0Ba-1-1-11,460 galaxyEnaQ0Ba-1-1-11,548 galaxyEnaQ0Ba-1-1-11,680 galaxyEnaQ0Ba-1-1-11,760 galaxyEnaQ0Ba-1-17,76 galaxyEnaQ0Ba-1-17,460 galaxyEnaQ0Ba-1-17,548 galaxyEnaQ0Ba-1-17,680 galaxyEnaQ0Ba-1-17,760 galaxyEnaQ0Ba-2,76 galaxyEnaQ0Ba-2,460 galaxyEnaQ0Ba-2,548 galaxyEnaQ0Ba-2,680 galaxyEnaQ0Ba-2,760 galaxyEnaQ1Ay-4,76 galaxyEnaQ1Ay-4,460 galaxyEnaQ1Ay-4,548 galaxyEnaQ1Ay-4,680 galaxyEnaQ1Ay-4,760 galaxyEnaQ1Ay-4-2,76 galaxyEnaQ1Ay-4-2,460 galaxyEnaQ1Ay-4-2,548 galaxyEnaQ1Ay-4-2,680 galaxyEnaQ1Ay-4-2,760 galaxyEnaQ1Ay-4-2-2,76 galaxyEnaQ1Ay-4-2-2,460 galaxyEnaQ1Ay-4-2-2,548 galaxyEnaQ1Ay-4-2-2,680 galaxyEnaQ1Ay-4-2-2,760 galaxyEnaQ1Ay-43,76 galaxyEnaQ1Ay-43,460 galaxyEnaQ1Ay-43,548 galaxyEnaQ1Ay-43,680 galaxyEnaQ1Ay-43,760 galaxyEnaQ1Ba-1-17,76 galaxyEnaQ1Ba-1-17,460 galaxyEnaQ1Ba-1-17,548 galaxyEnaQ1Ba-1-17,680 galaxyEnaQ1Ba-1-17,760 galaxyEnaQ2Ay-120,76 galaxyEnaQ2Ay-120,460 galaxyEnaQ2Ay-120,548 galaxyEnaQ2Ay-120,680 galaxyEnaQ2Ay-120,760 galaxyEnaQ2Ay-122,76 galaxyEnaQ2Ay-122,460 galaxyEnaQ2Ay-122,548 galaxyEnaQ2Ay-122,680 galaxyEnaQ2Ay-122,760 galaxyEnaQ2Ay-4,76 galaxyEnaQ2Ay-4,460 galaxyEnaQ2Ay-4,548 galaxyEnaQ2Ay-4,680 galaxyEnaQ2Ay-4,760 galaxyEnaQ2Ay-5,76 galaxyEnaQ2Ay-5,460 galaxyEnaQ2Ay-5,548 galaxyEnaQ2Ay-5,680 galaxyEnaQ2Ay-5,760 galaxyEnaQ2Ay-6,76 galaxyEnaQ2Ay-6,460 galaxyEnaQ2Ay-6,548 galaxyEnaQ2Ay-6,680 galaxyEnaQ2Ay-6,760 galaxyEnaQ3Ay-4,76 galaxyEnaQ3Ay-4,460 galaxyEnaQ3Ay-4,548 galaxyEnaQ3Ay-4,680 galaxyEnaQ3Ay-4,760 galaxyEnaQ3Ay-5,76 galaxyEnaQ3Ay-5,460 galaxyEnaQ3Ay-5,548 galaxyEnaQ3Ay-5,680 galaxyEnaQ3Ay-5,760 galaxyEnaQ3Ay-9,76 galaxyEnaQ3Ay-9,460 galaxyEnaQ3Ay-9,548 galaxyEnaQ3Ay-9,680 galaxyEnaQ3Ay-9,760 galaxyEnaQ3B-1-1-7,76 galaxyEnaQ3B-1-1-7,460 galaxyEnaQ3B-1-1-7,548 galaxyEnaQ3B-1-1-7,680 galaxyEnaQ3B-1-1-7,760 galaxyEnaQ3B-1-617-2,76 galaxyEnaQ3B-1-617-2,460 galaxyEnaQ3B-1-617-2,548 galaxyEnaQ3B-1-617-2,680 galaxyEnaQ3B-1-617-2,760 icshape,67 icshape,107 icshape,172 kimIvtCov,69 kimRnaMod,124 kimRnaMod,222 kimTranscripts,341 kimTranscripts,440 mccoy,31 mccoy,98 mccoy,402 mccoy,520 mccoy,555 mccoy,662 mccoy,681 microdel,159 microdel,179 multiz7way,115 multiz7way,280 multiz7way,313 ncbiGeneBGP,52 ncbiGeneBGP,95 ncbiGeneBGP,155 ncbiProducts,68 ncbiProducts,111 ncbiProducts,171 nextstrainClade,203 nextstrainFreq,196 nextstrainFreq,260 nextstrainGene,153 nextstrainParsimony,240 nextstrainParsimony,365 pbm,303 pbm,402 pbmShanghai,420 pbmShanghai,485 phyloGenes,169 phyloGenes,338 phyloGenes,437 pond,55 poranHla1,151 poranHla1,250 poranHla2,151 poranHla2,250 primers,71 primers,340 problematicSites,7 problematicSites,25 problematicSites,203 problematicSites,269 problematicSites,348 problematicSites,428 problematicSites,437 problematicSites,523 publicAnnots,93 publicAnnots,96 pyle,104 rapid,211 rapid,231 rapid,329 rappuoli,38 rappuoli,105 rappuoli,409 rappuoli,527 rappuoli,562 rappuoli,669 rappuoli,688 recomb,297 resist,74 resist,96 resist,120 resist,132 resistPred,145 resistPred,188 resistPred,212 resistPred,224 rosettaMhc,274 sarsCov2Phylo,135 sarsCov2Phylo,485 sarsCov2Phylo,558 sarsCov2Phylo,637 sarsCov2Phylo,728 sarsCov2PhyloPub,514 sarsCov2PhyloPub,583 sarsCov2PhyloPub,661 sarsCov2PhyloPub,878 sarsCov2PhyloPub,934 sarsCov2PhyloPub,1028 spikeMuts,227 spikeMuts,306 spikeMuts,347 strainCons119way,285 strainCons119way,293 strainCons119way,464 strainCons119way,633 strainCons119way,658 strainCons119way,1993 strainCons119way,1998 strainCons119way,2028 strainCons119way,2175 strainCons119way,2189 strainCons44way,233 strainCons44way,241 strainCons44way,412 strainCons44way,581 strainCons44way,606 strainCons44way,1588 strainCons44way,1593 strainCons44way,1623 strainCons44way,1770 strainCons44way,1784 swift,38 swift,160 swift,258 targets,206 transcriptome,347 transcriptome,446 unipCov2AliSwissprot,273 unipCov2AliSwissprot,327 unipCov2AliSwissprot,392 unipCov2Chain,248 unipCov2Chain,503 unipCov2Chain,557 unipCov2Chain,622 unipCov2DisulfBond,244 unipCov2DisulfBond,499 unipCov2DisulfBond,553 unipCov2DisulfBond,618 unipCov2Domain,243 unipCov2Domain,498 unipCov2Domain,552 unipCov2Domain,617 unipCov2Interest,179 unipCov2Interest,233 unipCov2LocCytopl,243 unipCov2LocCytopl,498 unipCov2LocCytopl,552 unipCov2LocCytopl,617 unipCov2LocExtra,243 unipCov2LocExtra,498 unipCov2LocExtra,552 unipCov2LocExtra,617 unipCov2LocSignal,244 unipCov2LocSignal,499 unipCov2LocSignal,553 unipCov2LocSignal,618 unipCov2LocTransMemb,244 unipCov2LocTransMemb,499 unipCov2LocTransMemb,553 unipCov2LocTransMemb,618 unipCov2Modif,247 unipCov2Modif,502 unipCov2Modif,556 unipCov2Modif,621 unipCov2Mut,244 unipCov2Mut,499 unipCov2Mut,553 unipCov2Mut,618 unipCov2Other,244 unipCov2Other,499 unipCov2Other,553 unipCov2Other,618 unipCov2Repeat,242 unipCov2Repeat,497 unipCov2Repeat,551 unipCov2Repeat,616 unipCov2Struct,246 unipCov2Struct,501 unipCov2Struct,555 unipCov2Struct,620 vaccines,167 vaccines,417 variantMuts,12 variantMuts,107 variantMuts,111 variantMuts,121 variantMuts,130 variantMuts,145 variantMuts,865 variantMuts,999 varskip,52 varskip,83 varskip,181 weizmanOrfs,152 weizmanOrfs,324 weizmanOrfs,343 orchestrated Q0_tracks,191 Q0_tracks,960 Q1_tracks,193 Q1_tracks,962 Q2_tracks,193 Q2_tracks,962 Q3_tracks,193 Q3_tracks,962 galaxyEna,193 galaxyEna,962 galaxyEnaQ0Ba-1,189 galaxyEnaQ0Ba-1,958 galaxyEnaQ0Ba-1-1,189 galaxyEnaQ0Ba-1-1,958 galaxyEnaQ0Ba-1-1-11,189 galaxyEnaQ0Ba-1-1-11,958 galaxyEnaQ0Ba-1-17,189 galaxyEnaQ0Ba-1-17,958 galaxyEnaQ0Ba-2,189 galaxyEnaQ0Ba-2,958 galaxyEnaQ1Ay-4,189 galaxyEnaQ1Ay-4,958 galaxyEnaQ1Ay-4-2,189 galaxyEnaQ1Ay-4-2,958 galaxyEnaQ1Ay-4-2-2,189 galaxyEnaQ1Ay-4-2-2,958 galaxyEnaQ1Ay-43,189 galaxyEnaQ1Ay-43,958 galaxyEnaQ1Ba-1-17,189 galaxyEnaQ1Ba-1-17,958 galaxyEnaQ2Ay-120,189 galaxyEnaQ2Ay-120,958 galaxyEnaQ2Ay-122,189 galaxyEnaQ2Ay-122,958 galaxyEnaQ2Ay-4,189 galaxyEnaQ2Ay-4,958 galaxyEnaQ2Ay-5,189 galaxyEnaQ2Ay-5,958 galaxyEnaQ2Ay-6,189 galaxyEnaQ2Ay-6,958 galaxyEnaQ3Ay-4,189 galaxyEnaQ3Ay-4,958 galaxyEnaQ3Ay-5,189 galaxyEnaQ3Ay-5,958 galaxyEnaQ3Ay-9,189 galaxyEnaQ3Ay-9,958 galaxyEnaQ3B-1-1-7,189 galaxyEnaQ3B-1-1-7,958 galaxyEnaQ3B-1-617-2,189 galaxyEnaQ3B-1-617-2,958 order gap,79 gold,110 nextstrainFreq,122 nextstrainSamples,344 nextstrainSamples,623 problematicSites,45 sarsCov2Phylo,65 sarsCov2Phylo,348 sarsCov2PhyloPub,79 sarsCov2PhyloPub,359 ordered addgene,24 nextstrainSamples,337 sarsCov2Phylo,342 sarsCov2PhyloPub,353 sarsCov2PhyloPub,377 ordering addgene,95 addgene,146 orf Calu3_07hpi,23 Calu3_07hpi,194 Calu3_07hpi,205 Calu3_07hpi,292 ORFs,1 ORFs,4 ORFs,21 ORFs,192 ORFs,203 ORFs,290 Vero6_05hpi,23 Vero6_05hpi,194 Vero6_05hpi,205 Vero6_05hpi,292 Vero6_24hpi,23 Vero6_24hpi,194 Vero6_24hpi,205 Vero6_24hpi,292 phyloGenes,102 phyloGenes,128 phyloGenes,199 phyloGenes,224 phyloGenes,247 phyloGenes,305 weizmanOrfs,29 weizmanOrfs,200 weizmanOrfs,211 weizmanOrfs,298 orf-rater Calu3_07hpi,216 ORFs,214 Vero6_05hpi,216 Vero6_24hpi,216 weizmanOrfs,222 orf10 phyloGenes,192 orf14 phyloGenes,324 phyloGenes,457 orf1a phyloGenes,82 orf1ab cd8escape,107 phyloGenes,83 orf1b primers,156 orf2b phyloGenes,186 phyloGenes,194 phyloGenes,462 orf3a phyloGenes,85 phyloGenes,104 phyloGenes,120 phyloGenes,229 orf3b phyloGenes,189 phyloGenes,241 phyloGenes,272 phyloGenes,284 orf3c phyloGenes,86 phyloGenes,97 orf3d phyloGenes,187 phyloGenes,219 phyloGenes,256 orf3d-2 phyloGenes,188 phyloGenes,242 phyloGenes,464 orf3h phyloGenes,119 orf6 phyloGenes,89 orf7a phyloGenes,90 orf7b phyloGenes,91 orf8 phyloGenes,92 orf9a phyloGenes,145 orf9b phyloGenes,95 phyloGenes,123 phyloGenes,322 orf9c phyloGenes,190 phyloGenes,300 phyloGenes,461 orfs Calu3_07hpi,15 Calu3_07hpi,58 ORFs,13 ORFs,56 Vero6_05hpi,15 Vero6_05hpi,58 Vero6_24hpi,15 Vero6_24hpi,58 gordon2,226 kimTranscripts,46 kimTranscripts,105 phyloGenes,572 transcriptome,38 transcriptome,97 weizmanOrfs,2 weizmanOrfs,4 weizmanOrfs,21 weizmanOrfs,64 organization vaccines,38 vaccines,551 variantMuts,45 variantMuts,240 organized multiz7way,660 strainCons119way,1009 strainCons44way,957 orientation cytoBandIdeo,6 gap,81 gold,112 origin multiz7way,958 primers,111 problematicSites,315 strainCons119way,2336 strainCons44way,1931 original IgG_Z-score-_COVID-19_patients,175 IgM_Z-score-_COVID-19_patients,175 bpmIggCovidSum,184 bpmIgmCovidSum,184 cd8escape,184 multiz7way,865 pbm,184 pbmShanghai,272 problematicSites,485 recomb,228 resistPred,168 sarsCov2Phylo,752 strainCons119way,2243 strainCons44way,1838 treangen,277 originally publicAnnots,28 originating sarsCov2PhyloPub,928 orkan vaccines,498 ortholog phyloGenes,277 orthology PhyloCSF_smooth,322 PhyloCSFpower,337 orton pond,268 other Calu3_07hpi,65 Calu3_07hpi,321 IgG_Z-score-_COVID-19_patients,68 IgG_Z-score-_COVID-19_patients,142 IgG_Z-score-_COVID-19_patients,297 IgM_Z-score-_COVID-19_patients,68 IgM_Z-score-_COVID-19_patients,142 IgM_Z-score-_COVID-19_patients,297 ORFs,63 ORFs,319 PhyloCSF_smooth,56 PhyloCSF_smooth,312 PhyloCSF_smooth,639 PhyloCSFpower,71 PhyloCSFpower,327 Starr_Bloom,213 Starr_Bloom_bind,207 Vero6_05hpi,65 Vero6_05hpi,321 Vero6_24hpi,65 Vero6_24hpi,321 abEscape,665 artic,80 articV4,80 articV4_1,93 augustusGene,208 bloomEscMabAvg,669 bloomEscMax,675 bloomEscSerumAvg,670 bloomEscTop,673 bpmIggCovidSum,77 bpmIggCovidSum,151 bpmIggCovidSum,306 bpmIgmCovidSum,77 bpmIgmCovidSum,151 bpmIgmCovidSum,306 cas13Crispr,365 contacts,293 cpgIslandExt,135 cpgIslandExtUnmasked,138 cpgIslandSuper,135 epitopes,229 escape,672 kimRnaMod,127 kimTranscripts,344 mccoy,665 microdel,152 multiz7way,47 multiz7way,402 multiz7way,853 nextstrainParsimony,147 nextstrainParsimony,183 nextstrainSamples,80 nextstrainSamples,711 pbm,77 pbm,151 pbm,306 pbmShanghai,423 phyloGenes,33 phyloGenes,152 phyloGenes,341 poranHla1,154 poranHla2,154 potPathoIndel,227 primers,162 problematicSites,160 rapid,150 rapid,234 rappuoli,672 sarsCov2Phylo,58 sarsCov2Phylo,255 sarsCov2Phylo,288 sarsCov2PhyloPub,72 sarsCov2PhyloPub,262 sarsCov2PhyloPub,295 strainCons119way,140 strainCons119way,272 strainCons119way,744 strainCons119way,2231 strainCons44way,88 strainCons44way,220 strainCons44way,692 strainCons44way,1826 swift,163 transcriptome,350 unipCov2Chain,73 unipCov2Chain,95 unipCov2Chain,252 unipCov2Chain,255 unipCov2DisulfBond,69 unipCov2DisulfBond,91 unipCov2DisulfBond,248 unipCov2DisulfBond,251 unipCov2Domain,68 unipCov2Domain,90 unipCov2Domain,247 unipCov2Domain,250 unipCov2LocCytopl,68 unipCov2LocCytopl,90 unipCov2LocCytopl,247 unipCov2LocCytopl,250 unipCov2LocExtra,68 unipCov2LocExtra,90 unipCov2LocExtra,247 unipCov2LocExtra,250 unipCov2LocSignal,69 unipCov2LocSignal,91 unipCov2LocSignal,248 unipCov2LocSignal,251 unipCov2LocTransMemb,69 unipCov2LocTransMemb,91 unipCov2LocTransMemb,248 unipCov2LocTransMemb,251 unipCov2Modif,72 unipCov2Modif,94 unipCov2Modif,251 unipCov2Modif,254 unipCov2Mut,69 unipCov2Mut,91 unipCov2Mut,248 unipCov2Mut,251 unipCov2Other,1 unipCov2Other,4 unipCov2Other,69 unipCov2Other,91 unipCov2Other,248 unipCov2Other,251 unipCov2Repeat,67 unipCov2Repeat,89 unipCov2Repeat,246 unipCov2Repeat,249 unipCov2Struct,71 unipCov2Struct,93 unipCov2Struct,250 unipCov2Struct,253 varskip,86 weizmanOrfs,71 weizmanOrfs,327 others cpgIslandExt,247 cpgIslandExtUnmasked,250 cpgIslandSuper,247 ncbiGeneBGP,183 ncbiProducts,199 primers,246 variantMuts,894 otherwise cpgIslandExt,185 cpgIslandExtUnmasked,188 cpgIslandSuper,185 multiz7way,509 multiz7way,535 nextstrainSamples,822 strainCons119way,859 strainCons119way,885 strainCons44way,807 strainCons44way,833 ouml augustusGene,269 our Calu3_07hpi,331 Calu3_07hpi,338 IgG_Z-score-_COVID-19_patients,277 IgG_Z-score-_COVID-19_patients,334 IgG_Z-score-_COVID-19_patients,347 IgG_Z-score-_COVID-19_patients,387 IgG_Z-score-_COVID-19_patients,394 IgM_Z-score-_COVID-19_patients,277 IgM_Z-score-_COVID-19_patients,334 IgM_Z-score-_COVID-19_patients,347 IgM_Z-score-_COVID-19_patients,387 IgM_Z-score-_COVID-19_patients,394 ORFs,329 ORFs,336 PhyloCSF_smooth,656 PhyloCSF_smooth,663 Q0_tracks,659 Q1_tracks,661 Q2_tracks,661 Q3_tracks,661 Starr_Bloom,223 Starr_Bloom,230 Starr_Bloom_bind,217 Starr_Bloom_bind,224 Vero6_05hpi,331 Vero6_05hpi,338 Vero6_24hpi,331 Vero6_24hpi,338 abEscape,675 abEscape,682 artic,117 artic,130 artic,169 artic,176 articV4,117 articV4,130 articV4,169 articV4,176 articV4_1,130 articV4_1,143 articV4_1,182 articV4_1,189 augustusGene,43 bloomEscMabAvg,679 bloomEscMabAvg,686 bloomEscMax,685 bloomEscMax,692 bloomEscSerumAvg,680 bloomEscSerumAvg,687 bloomEscTop,683 bloomEscTop,690 bpmIggCovidSum,286 bpmIggCovidSum,343 bpmIggCovidSum,356 bpmIggCovidSum,396 bpmIggCovidSum,403 bpmIgmCovidSum,286 bpmIgmCovidSum,343 bpmIgmCovidSum,356 bpmIgmCovidSum,396 bpmIgmCovidSum,403 cas13Crispr,402 cas13Crispr,415 cas13Crispr,454 cas13Crispr,461 contacts,330 contacts,343 contacts,382 contacts,389 cpgIslandExt,536 cpgIslandExt,545 cpgIslandExt,552 cpgIslandExtUnmasked,539 cpgIslandExtUnmasked,548 cpgIslandExtUnmasked,555 cpgIslandSuper,536 cpgIslandSuper,545 cpgIslandSuper,552 escape,682 escape,689 galaxyEna,661 galaxyEnaQ0Ba-1,657 galaxyEnaQ0Ba-1-1,657 galaxyEnaQ0Ba-1-1-11,657 galaxyEnaQ0Ba-1-17,657 galaxyEnaQ0Ba-2,657 galaxyEnaQ1Ay-4,657 galaxyEnaQ1Ay-4-2,657 galaxyEnaQ1Ay-4-2-2,657 galaxyEnaQ1Ay-43,657 galaxyEnaQ1Ba-1-17,657 galaxyEnaQ2Ay-120,657 galaxyEnaQ2Ay-122,657 galaxyEnaQ2Ay-4,657 galaxyEnaQ2Ay-5,657 galaxyEnaQ2Ay-6,657 galaxyEnaQ3Ay-4,657 galaxyEnaQ3Ay-5,657 galaxyEnaQ3Ay-9,657 galaxyEnaQ3B-1-1-7,657 galaxyEnaQ3B-1-617-2,657 genscan,58 icshape,94 icshape,119 icshape,166 icshape,173 kimRnaMod,164 kimRnaMod,177 kimRnaMod,216 kimRnaMod,223 kimTranscripts,381 kimTranscripts,394 kimTranscripts,434 kimTranscripts,441 mccoy,675 mccoy,682 microdel,173 microdel,180 ncbiGeneBGP,84 ncbiGeneBGP,115 ncbiGeneBGP,149 ncbiGeneBGP,156 ncbiProducts,100 ncbiProducts,131 ncbiProducts,165 ncbiProducts,172 nextstrainClade,190 nextstrainClade,216 nextstrainFreq,183 nextstrainFreq,208 nextstrainFreq,254 nextstrainFreq,261 nextstrainGene,140 nextstrainGene,165 nextstrainParsimony,352 nextstrainParsimony,377 pbm,286 pbm,343 pbm,356 pbm,396 pbm,403 pbmShanghai,403 pbmShanghai,460 pbmShanghai,473 pbmShanghai,479 pbmShanghai,486 phyloGenes,378 phyloGenes,391 phyloGenes,431 phyloGenes,438 poranHla1,191 poranHla1,204 poranHla1,244 poranHla1,251 poranHla2,191 poranHla2,204 poranHla2,244 poranHla2,251 primers,327 primers,353 problematicSites,510 problematicSites,535 rapid,271 rapid,284 rapid,323 rapid,330 rappuoli,682 rappuoli,689 recomb,234 recomb,284 recomb,310 resist,126 resist,133 resistPred,218 resistPred,225 rosettaMhc,88 rosettaMhc,110 sarsCov2Phylo,715 sarsCov2PhyloPub,814 sarsCov2PhyloPub,887 spikeMuts,334 spikeMuts,341 spikeMuts,348 strainCons119way,431 strainCons44way,379 swift,200 swift,213 swift,252 swift,259 transcriptome,387 transcriptome,400 transcriptome,440 transcriptome,447 unipCov2AliSwissprot,316 unipCov2AliSwissprot,380 unipCov2AliSwissprot,386 unipCov2AliSwissprot,393 unipCov2Chain,546 unipCov2Chain,610 unipCov2Chain,616 unipCov2Chain,623 unipCov2DisulfBond,542 unipCov2DisulfBond,606 unipCov2DisulfBond,612 unipCov2DisulfBond,619 unipCov2Domain,541 unipCov2Domain,605 unipCov2Domain,611 unipCov2Domain,618 unipCov2Interest,222 unipCov2LocCytopl,541 unipCov2LocCytopl,605 unipCov2LocCytopl,611 unipCov2LocCytopl,618 unipCov2LocExtra,541 unipCov2LocExtra,605 unipCov2LocExtra,611 unipCov2LocExtra,618 unipCov2LocSignal,542 unipCov2LocSignal,606 unipCov2LocSignal,612 unipCov2LocSignal,619 unipCov2LocTransMemb,542 unipCov2LocTransMemb,606 unipCov2LocTransMemb,612 unipCov2LocTransMemb,619 unipCov2Modif,545 unipCov2Modif,609 unipCov2Modif,615 unipCov2Modif,622 unipCov2Mut,542 unipCov2Mut,606 unipCov2Mut,612 unipCov2Mut,619 unipCov2Other,542 unipCov2Other,606 unipCov2Other,612 unipCov2Other,619 unipCov2Repeat,540 unipCov2Repeat,604 unipCov2Repeat,610 unipCov2Repeat,617 unipCov2Struct,544 unipCov2Struct,608 unipCov2Struct,614 unipCov2Struct,621 vaccines,368 variantMuts,1011 varskip,123 varskip,136 varskip,175 varskip,182 weizmanOrfs,337 weizmanOrfs,344 out Starr_Bloom,196 Starr_Bloom_bind,190 nextstrainFreq,318 nextstrainSamples,964 problematicSites,146 pyle,259 rnaStructRangan,49 sarsCov2Phylo,914 sarsCov2PhyloPub,1020 strainCons119way,266 strainCons44way,214 vaccines,253 outbreak multiz7way,964 nextstrainClade,27 nextstrainFreq,25 nextstrainGene,25 nextstrainParsimony,44 nextstrainSamples,40 pdb,55 strainCons119way,101 strainCons119way,2342 strainCons44way,1937 outbreak.info variantMuts,88 variantMuts,1221 variantMuts,1497 outbreaks potPathoIndel,36 outdated pond,66 outlier sarsCov2Phylo,1156 sarsCov2PhyloPub,1289 outliers IgG_Z-score-_COVID-19_patients,267 IgM_Z-score-_COVID-19_patients,267 bpmIggCovidSum,276 bpmIgmCovidSum,276 pbm,276 outline rosettaMhc,84 outlink contacts,82 output Q0_tracks,885 Q1_tracks,887 Q2_tracks,887 Q3_tracks,887 cpgIslandExt,499 cpgIslandExtUnmasked,502 cpgIslandSuper,499 galaxyEna,887 galaxyEnaQ0Ba-1,883 galaxyEnaQ0Ba-1-1,883 galaxyEnaQ0Ba-1-1-11,883 galaxyEnaQ0Ba-1-17,883 galaxyEnaQ0Ba-2,883 galaxyEnaQ1Ay-4,883 galaxyEnaQ1Ay-4-2,883 galaxyEnaQ1Ay-4-2-2,883 galaxyEnaQ1Ay-43,883 galaxyEnaQ1Ba-1-17,883 galaxyEnaQ2Ay-120,883 galaxyEnaQ2Ay-122,883 galaxyEnaQ2Ay-4,883 galaxyEnaQ2Ay-5,883 galaxyEnaQ2Ay-6,883 galaxyEnaQ3Ay-4,883 galaxyEnaQ3Ay-5,883 galaxyEnaQ3Ay-9,883 galaxyEnaQ3B-1-1-7,883 galaxyEnaQ3B-1-617-2,883 rfam,58 vaccines,102 windowmaskerSdust,63 windowmaskerSdust,72 outputs Q0_tracks,918 Q1_tracks,920 Q2_tracks,920 Q3_tracks,920 galaxyEna,920 galaxyEnaQ0Ba-1,916 galaxyEnaQ0Ba-1-1,916 galaxyEnaQ0Ba-1-1-11,916 galaxyEnaQ0Ba-1-17,916 galaxyEnaQ0Ba-2,916 galaxyEnaQ1Ay-4,916 galaxyEnaQ1Ay-4-2,916 galaxyEnaQ1Ay-4-2-2,916 galaxyEnaQ1Ay-43,916 galaxyEnaQ1Ba-1-17,916 galaxyEnaQ2Ay-120,916 galaxyEnaQ2Ay-122,916 galaxyEnaQ2Ay-4,916 galaxyEnaQ2Ay-5,916 galaxyEnaQ2Ay-6,916 galaxyEnaQ3Ay-4,916 galaxyEnaQ3Ay-5,916 galaxyEnaQ3Ay-9,916 galaxyEnaQ3B-1-1-7,916 galaxyEnaQ3B-1-617-2,916 outside multiz7way,226 strainCons119way,575 strainCons44way,523 unipCov2Chain,367 unipCov2DisulfBond,363 unipCov2Domain,362 unipCov2LocCytopl,362 unipCov2LocExtra,362 unipCov2LocSignal,363 unipCov2LocTransMemb,363 unipCov2Modif,366 unipCov2Mut,363 unipCov2Other,363 unipCov2Repeat,361 unipCov2Struct,365 over Q0_tracks,399 Q0_tracks,405 Q0_tracks,544 Q0_tracks,909 Q1_tracks,401 Q1_tracks,407 Q1_tracks,546 Q1_tracks,911 Q2_tracks,401 Q2_tracks,407 Q2_tracks,546 Q2_tracks,911 Q3_tracks,401 Q3_tracks,407 Q3_tracks,546 Q3_tracks,911 cpgIslandExt,97 cpgIslandExtUnmasked,100 cpgIslandSuper,97 galaxyEna,401 galaxyEna,407 galaxyEna,546 galaxyEna,911 galaxyEnaQ0Ba-1,397 galaxyEnaQ0Ba-1,403 galaxyEnaQ0Ba-1,542 galaxyEnaQ0Ba-1,907 galaxyEnaQ0Ba-1-1,397 galaxyEnaQ0Ba-1-1,403 galaxyEnaQ0Ba-1-1,542 galaxyEnaQ0Ba-1-1,907 galaxyEnaQ0Ba-1-1-11,397 galaxyEnaQ0Ba-1-1-11,403 galaxyEnaQ0Ba-1-1-11,542 galaxyEnaQ0Ba-1-1-11,907 galaxyEnaQ0Ba-1-17,397 galaxyEnaQ0Ba-1-17,403 galaxyEnaQ0Ba-1-17,542 galaxyEnaQ0Ba-1-17,907 galaxyEnaQ0Ba-2,397 galaxyEnaQ0Ba-2,403 galaxyEnaQ0Ba-2,542 galaxyEnaQ0Ba-2,907 galaxyEnaQ1Ay-4,397 galaxyEnaQ1Ay-4,403 galaxyEnaQ1Ay-4,542 galaxyEnaQ1Ay-4,907 galaxyEnaQ1Ay-4-2,397 galaxyEnaQ1Ay-4-2,403 galaxyEnaQ1Ay-4-2,542 galaxyEnaQ1Ay-4-2,907 galaxyEnaQ1Ay-4-2-2,397 galaxyEnaQ1Ay-4-2-2,403 galaxyEnaQ1Ay-4-2-2,542 galaxyEnaQ1Ay-4-2-2,907 galaxyEnaQ1Ay-43,397 galaxyEnaQ1Ay-43,403 galaxyEnaQ1Ay-43,542 galaxyEnaQ1Ay-43,907 galaxyEnaQ1Ba-1-17,397 galaxyEnaQ1Ba-1-17,403 galaxyEnaQ1Ba-1-17,542 galaxyEnaQ1Ba-1-17,907 galaxyEnaQ2Ay-120,397 galaxyEnaQ2Ay-120,403 galaxyEnaQ2Ay-120,542 galaxyEnaQ2Ay-120,907 galaxyEnaQ2Ay-122,397 galaxyEnaQ2Ay-122,403 galaxyEnaQ2Ay-122,542 galaxyEnaQ2Ay-122,907 galaxyEnaQ2Ay-4,397 galaxyEnaQ2Ay-4,403 galaxyEnaQ2Ay-4,542 galaxyEnaQ2Ay-4,907 galaxyEnaQ2Ay-5,397 galaxyEnaQ2Ay-5,403 galaxyEnaQ2Ay-5,542 galaxyEnaQ2Ay-5,907 galaxyEnaQ2Ay-6,397 galaxyEnaQ2Ay-6,403 galaxyEnaQ2Ay-6,542 galaxyEnaQ2Ay-6,907 galaxyEnaQ3Ay-4,397 galaxyEnaQ3Ay-4,403 galaxyEnaQ3Ay-4,542 galaxyEnaQ3Ay-4,907 galaxyEnaQ3Ay-5,397 galaxyEnaQ3Ay-5,403 galaxyEnaQ3Ay-5,542 galaxyEnaQ3Ay-5,907 galaxyEnaQ3Ay-9,397 galaxyEnaQ3Ay-9,403 galaxyEnaQ3Ay-9,542 galaxyEnaQ3Ay-9,907 galaxyEnaQ3B-1-1-7,397 galaxyEnaQ3B-1-1-7,403 galaxyEnaQ3B-1-1-7,542 galaxyEnaQ3B-1-1-7,907 galaxyEnaQ3B-1-617-2,397 galaxyEnaQ3B-1-617-2,403 galaxyEnaQ3B-1-617-2,542 galaxyEnaQ3B-1-617-2,907 kimRnaMod,78 microdel,237 multiz7way,553 nextstrainParsimony,422 nextstrainSamples,476 nextstrainSamples,899 pdb,39 poranHla1,25 poranHla1,95 poranHla1,125 poranHla2,25 poranHla2,95 poranHla2,125 potPathoIndel,163 resist,76 sarsCov2Phylo,506 sarsCov2Phylo,835 sarsCov2PhyloPub,535 sarsCov2PhyloPub,918 strainCons119way,903 strainCons44way,851 unipCov2Chain,46 unipCov2DisulfBond,42 unipCov2Domain,41 unipCov2LocCytopl,41 unipCov2LocExtra,41 unipCov2LocSignal,42 unipCov2LocTransMemb,42 unipCov2Modif,45 unipCov2Mut,42 unipCov2Other,42 unipCov2Repeat,40 unipCov2Struct,44 variantMuts,1181 overall transcriptome,269 overlap IgG_Z-score-_COVID-19_patients,95 IgM_Z-score-_COVID-19_patients,95 bpmIggCovidSum,104 bpmIgmCovidSum,104 pbm,104 pbmShanghai,161 pbmShanghai,337 sarsCov2Phylo,258 sarsCov2Phylo,291 sarsCov2PhyloPub,265 sarsCov2PhyloPub,298 overlapping phyloGenes,103 phyloGenes,129 phyloGenes,203 phyloGenes,228 phyloGenes,306 phyloGenes,571 targets,44 overlaps sarsCov2Phylo,206 sarsCov2Phylo,214 sarsCov2Phylo,234 sarsCov2Phylo,241 sarsCov2PhyloPub,213 sarsCov2PhyloPub,221 sarsCov2PhyloPub,241 sarsCov2PhyloPub,248 overview Q0_tracks,908 Q1_tracks,910 Q2_tracks,910 Q3_tracks,910 crisprDet,54 galaxyEna,910 galaxyEnaQ0Ba-1,906 galaxyEnaQ0Ba-1-1,906 galaxyEnaQ0Ba-1-1-11,906 galaxyEnaQ0Ba-1-17,906 galaxyEnaQ0Ba-2,906 galaxyEnaQ1Ay-4,906 galaxyEnaQ1Ay-4-2,906 galaxyEnaQ1Ay-4-2-2,906 galaxyEnaQ1Ay-43,906 galaxyEnaQ1Ba-1-17,906 galaxyEnaQ2Ay-120,906 galaxyEnaQ2Ay-122,906 galaxyEnaQ2Ay-4,906 galaxyEnaQ2Ay-5,906 galaxyEnaQ2Ay-6,906 galaxyEnaQ3Ay-4,906 galaxyEnaQ3Ay-5,906 galaxyEnaQ3Ay-9,906 galaxyEnaQ3B-1-1-7,906 galaxyEnaQ3B-1-617-2,906 primers,108 primers,128 own sarsCov2PhyloPub,375 oxford artic,6 articV4,6 articV4_1,6 rapid,8 rapid,361 p Q0_tracks,1327 Q1_tracks,1329 Q2_tracks,1329 Q3_tracks,1329 abEscape,730 abEscape,804 bloomEscMabAvg,734 bloomEscMabAvg,808 bloomEscMax,740 bloomEscMax,814 bloomEscSerumAvg,735 bloomEscSerumAvg,809 bloomEscTop,738 bloomEscTop,812 escape,737 escape,811 galaxyEna,1329 galaxyEnaQ0Ba-1,1325 galaxyEnaQ0Ba-1-1,1325 galaxyEnaQ0Ba-1-1-11,1325 galaxyEnaQ0Ba-1-17,1325 galaxyEnaQ0Ba-2,1325 galaxyEnaQ1Ay-4,1325 galaxyEnaQ1Ay-4-2,1325 galaxyEnaQ1Ay-4-2-2,1325 galaxyEnaQ1Ay-43,1325 galaxyEnaQ1Ba-1-17,1325 galaxyEnaQ2Ay-120,1325 galaxyEnaQ2Ay-122,1325 galaxyEnaQ2Ay-4,1325 galaxyEnaQ2Ay-5,1325 galaxyEnaQ2Ay-6,1325 galaxyEnaQ3Ay-4,1325 galaxyEnaQ3Ay-5,1325 galaxyEnaQ3Ay-9,1325 galaxyEnaQ3B-1-1-7,1325 galaxyEnaQ3B-1-617-2,1325 genscan,205 mccoy,730 mccoy,804 microdel,291 nextstrainClade,255 nextstrainFreq,390 nextstrainFreq,413 nextstrainGene,204 nextstrainParsimony,457 nextstrainSamples,1010 nextstrainSamples,1033 pond,271 rappuoli,737 rappuoli,811 p-values strainCons119way,363 strainCons119way,1990 strainCons44way,311 strainCons44way,1585 p.1 variantAaMutsV2_P_1,6 variantMuts,304 variantNucMutsV2_P_1,6 p1 IgM_Z-score-_COVID-19_patients_P1,1 IgM_Z-score-_COVID-19_patients_P1,2 P1,1 P1,2 p10 IgM_Z-score-_COVID-19_patients_P10,1 IgM_Z-score-_COVID-19_patients_P10,2 P10,1 P10,2 p11 IgM_Z-score-_COVID-19_patients_P11,1 IgM_Z-score-_COVID-19_patients_P11,2 P11,1 P11,2 p15 IgM_Z-score-_COVID-19_patients_P15,1 IgM_Z-score-_COVID-19_patients_P15,2 P15,1 P15,2 p32 IgM_Z-score-_COVID-19_patients_P32,1 IgM_Z-score-_COVID-19_patients_P32,2 P32,1 P32,2 p33 IgM_Z-score-_COVID-19_patients_P33,1 IgM_Z-score-_COVID-19_patients_P33,2 P33,1 P33,2 p4 IgM_Z-score-_COVID-19_patients_P4,1 IgM_Z-score-_COVID-19_patients_P4,2 P4,1 P4,2 p45 IgM_Z-score-_COVID-19_patients_P45,1 IgM_Z-score-_COVID-19_patients_P45,2 P45,1 P45,2 p52 IgM_Z-score-_COVID-19_patients_P52,1 IgM_Z-score-_COVID-19_patients_P52,2 P52,1 P52,2 p52.bb IgG_Z-score-_COVID-19_patients,376 IgM_Z-score-_COVID-19_patients,376 bpmIggCovidSum,385 bpmIgmCovidSum,385 pbm,385 p6 IgM_Z-score-_COVID-19_patients_P6,1 IgM_Z-score-_COVID-19_patients_P6,2 P6,1 P6,2 p681h spikeMuts,139 p_bind_avg P_bind_avg,1 p_expr_avg P_expr_avg_Expression,1 pac multiz7way,1223 strainCons119way,2601 strainCons44way,2196 paciello abEscape,871 bloomEscMabAvg,875 bloomEscMax,881 bloomEscSerumAvg,876 bloomEscTop,879 escape,878 mccoy,871 rappuoli,878 pack IgG_Z-score-_COVID-19_patients,124 IgM_Z-score-_COVID-19_patients,124 bpmIggCovidSum,133 bpmIgmCovidSum,133 multiz7way,113 multiz7way,150 nextstrainSamples,323 pbm,133 pbmShanghai,190 pbmShanghai,216 sarsCov2Phylo,328 sarsCov2PhyloPub,339 strainCons119way,462 strainCons119way,499 strainCons119way,2188 strainCons44way,410 strainCons44way,447 strainCons44way,1783 varskip,51 package strainCons119way,126 strainCons119way,1723 strainCons44way,74 strainCons44way,1318 packages epitopes,31 packing contacts,176 paftools.js variantMuts,917 page IgG_Z-score-_COVID-19_patients,349 IgM_Z-score-_COVID-19_patients,349 abEscape,489 artic,132 articV4,132 articV4_1,145 bloomEscMabAvg,493 bloomEscMax,499 bloomEscSerumAvg,494 bloomEscTop,497 bpmIggCovidSum,358 bpmIgmCovidSum,358 cas13Crispr,417 contacts,89 contacts,345 cpgIslandExt,223 cpgIslandExt,547 cpgIslandExtUnmasked,226 cpgIslandExtUnmasked,550 cpgIslandSuper,223 cpgIslandSuper,547 escape,496 genscan,78 genscan,123 iedb,62 kimNp,104 kimRnaMod,179 kimTranscripts,396 mccoy,489 multiz7way,253 multiz7way,444 ncbiGeneBGP,117 ncbiProducts,133 nextstrainFreq,343 nextstrainParsimony,392 nextstrainSamples,719 nextstrainSamples,983 pbm,358 pbmShanghai,475 pdb,83 pdb,87 pdb,99 phyloGenes,393 poranHla1,116 poranHla1,206 poranHla2,116 poranHla2,206 rapid,286 rappuoli,496 recomb,70 spikeMuts,116 strainCons119way,602 strainCons119way,794 strainCons119way,2174 strainCons44way,550 strainCons44way,742 strainCons44way,1769 swift,215 transcriptome,402 unipCov2AliSwissprot,483 unipCov2Chain,121 unipCov2Chain,712 unipCov2DisulfBond,117 unipCov2DisulfBond,708 unipCov2Domain,116 unipCov2Domain,707 unipCov2Interest,366 unipCov2LocCytopl,116 unipCov2LocCytopl,707 unipCov2LocExtra,116 unipCov2LocExtra,707 unipCov2LocSignal,117 unipCov2LocSignal,708 unipCov2LocTransMemb,117 unipCov2LocTransMemb,708 unipCov2Modif,120 unipCov2Modif,711 unipCov2Mut,117 unipCov2Mut,708 unipCov2Other,117 unipCov2Other,708 unipCov2Repeat,115 unipCov2Repeat,706 unipCov2Struct,119 unipCov2Struct,710 variantMuts,1027 varskip,138 pages variantMuts,95 pair gap,95 rapid,48 paired-end Q0_tracks,113 Q0_tracks,846 Q1_tracks,115 Q1_tracks,848 Q2_tracks,115 Q2_tracks,848 Q3_tracks,115 Q3_tracks,848 galaxyEna,115 galaxyEna,848 galaxyEnaQ0Ba-1,111 galaxyEnaQ0Ba-1,844 galaxyEnaQ0Ba-1-1,111 galaxyEnaQ0Ba-1-1,844 galaxyEnaQ0Ba-1-1-11,111 galaxyEnaQ0Ba-1-1-11,844 galaxyEnaQ0Ba-1-17,111 galaxyEnaQ0Ba-1-17,844 galaxyEnaQ0Ba-2,111 galaxyEnaQ0Ba-2,844 galaxyEnaQ1Ay-4,111 galaxyEnaQ1Ay-4,844 galaxyEnaQ1Ay-4-2,111 galaxyEnaQ1Ay-4-2,844 galaxyEnaQ1Ay-4-2-2,111 galaxyEnaQ1Ay-4-2-2,844 galaxyEnaQ1Ay-43,111 galaxyEnaQ1Ay-43,844 galaxyEnaQ1Ba-1-17,111 galaxyEnaQ1Ba-1-17,844 galaxyEnaQ2Ay-120,111 galaxyEnaQ2Ay-120,844 galaxyEnaQ2Ay-122,111 galaxyEnaQ2Ay-122,844 galaxyEnaQ2Ay-4,111 galaxyEnaQ2Ay-4,844 galaxyEnaQ2Ay-5,111 galaxyEnaQ2Ay-5,844 galaxyEnaQ2Ay-6,111 galaxyEnaQ2Ay-6,844 galaxyEnaQ3Ay-4,111 galaxyEnaQ3Ay-4,844 galaxyEnaQ3Ay-5,111 galaxyEnaQ3Ay-5,844 galaxyEnaQ3Ay-9,111 galaxyEnaQ3Ay-9,844 galaxyEnaQ3B-1-1-7,111 galaxyEnaQ3B-1-1-7,844 galaxyEnaQ3B-1-617-2,111 galaxyEnaQ3B-1-617-2,844 pairing pyle,161 pairs swift,44 swift,60 pairwise multiz7way,89 multiz7way,263 multiz7way,571 multiz7way,637 multiz7way,733 multiz7way,1219 multiz7way,1233 strainCons119way,438 strainCons119way,612 strainCons119way,921 strainCons119way,986 strainCons119way,1493 strainCons119way,2597 strainCons119way,2611 strainCons44way,386 strainCons44way,560 strainCons44way,869 strainCons44way,934 strainCons44way,1163 strainCons44way,2192 strainCons44way,2206 variantMuts,1450 pale multiz7way,230 strainCons119way,579 strainCons44way,527 palette pbmShanghai,253 pbmShanghai,263 pan icshape,183 pandemic PhyloCSF_smooth,800 PhyloCSFpower,777 Q0_tracks,304 Q1_tracks,306 Q2_tracks,306 Q3_tracks,306 galaxyEna,306 galaxyEnaQ0Ba-1,302 galaxyEnaQ0Ba-1-1,302 galaxyEnaQ0Ba-1-1-11,302 galaxyEnaQ0Ba-1-17,302 galaxyEnaQ0Ba-2,302 galaxyEnaQ1Ay-4,302 galaxyEnaQ1Ay-4-2,302 galaxyEnaQ1Ay-4-2-2,302 galaxyEnaQ1Ay-43,302 galaxyEnaQ1Ba-1-17,302 galaxyEnaQ2Ay-120,302 galaxyEnaQ2Ay-122,302 galaxyEnaQ2Ay-4,302 galaxyEnaQ2Ay-5,302 galaxyEnaQ2Ay-6,302 galaxyEnaQ3Ay-4,302 galaxyEnaQ3Ay-5,302 galaxyEnaQ3Ay-9,302 galaxyEnaQ3B-1-1-7,302 galaxyEnaQ3B-1-617-2,302 sarsCov2PhyloPub,1249 pandemic-scale recomb,93 recomb,345 panel swift,22 pangolin Q0_tracks,223 Q0_tracks,372 Q0_tracks,1032 Q0_tracks,1067 Q1_tracks,225 Q1_tracks,374 Q1_tracks,1034 Q1_tracks,1069 Q2_tracks,225 Q2_tracks,374 Q2_tracks,1034 Q2_tracks,1069 Q3_tracks,225 Q3_tracks,374 Q3_tracks,1034 Q3_tracks,1069 galaxyEna,225 galaxyEna,374 galaxyEna,1034 galaxyEna,1069 galaxyEnaQ0Ba-1,221 galaxyEnaQ0Ba-1,370 galaxyEnaQ0Ba-1,1030 galaxyEnaQ0Ba-1,1065 galaxyEnaQ0Ba-1-1,221 galaxyEnaQ0Ba-1-1,370 galaxyEnaQ0Ba-1-1,1030 galaxyEnaQ0Ba-1-1,1065 galaxyEnaQ0Ba-1-1-11,221 galaxyEnaQ0Ba-1-1-11,370 galaxyEnaQ0Ba-1-1-11,1030 galaxyEnaQ0Ba-1-1-11,1065 galaxyEnaQ0Ba-1-17,221 galaxyEnaQ0Ba-1-17,370 galaxyEnaQ0Ba-1-17,1030 galaxyEnaQ0Ba-1-17,1065 galaxyEnaQ0Ba-2,221 galaxyEnaQ0Ba-2,370 galaxyEnaQ0Ba-2,1030 galaxyEnaQ0Ba-2,1065 galaxyEnaQ1Ay-4,221 galaxyEnaQ1Ay-4,370 galaxyEnaQ1Ay-4,1030 galaxyEnaQ1Ay-4,1065 galaxyEnaQ1Ay-4-2,221 galaxyEnaQ1Ay-4-2,370 galaxyEnaQ1Ay-4-2,1030 galaxyEnaQ1Ay-4-2,1065 galaxyEnaQ1Ay-4-2-2,221 galaxyEnaQ1Ay-4-2-2,370 galaxyEnaQ1Ay-4-2-2,1030 galaxyEnaQ1Ay-4-2-2,1065 galaxyEnaQ1Ay-43,221 galaxyEnaQ1Ay-43,370 galaxyEnaQ1Ay-43,1030 galaxyEnaQ1Ay-43,1065 galaxyEnaQ1Ba-1-17,221 galaxyEnaQ1Ba-1-17,370 galaxyEnaQ1Ba-1-17,1030 galaxyEnaQ1Ba-1-17,1065 galaxyEnaQ2Ay-120,221 galaxyEnaQ2Ay-120,370 galaxyEnaQ2Ay-120,1030 galaxyEnaQ2Ay-120,1065 galaxyEnaQ2Ay-122,221 galaxyEnaQ2Ay-122,370 galaxyEnaQ2Ay-122,1030 galaxyEnaQ2Ay-122,1065 galaxyEnaQ2Ay-4,221 galaxyEnaQ2Ay-4,370 galaxyEnaQ2Ay-4,1030 galaxyEnaQ2Ay-4,1065 galaxyEnaQ2Ay-5,221 galaxyEnaQ2Ay-5,370 galaxyEnaQ2Ay-5,1030 galaxyEnaQ2Ay-5,1065 galaxyEnaQ2Ay-6,221 galaxyEnaQ2Ay-6,370 galaxyEnaQ2Ay-6,1030 galaxyEnaQ2Ay-6,1065 galaxyEnaQ3Ay-4,221 galaxyEnaQ3Ay-4,370 galaxyEnaQ3Ay-4,1030 galaxyEnaQ3Ay-4,1065 galaxyEnaQ3Ay-5,221 galaxyEnaQ3Ay-5,370 galaxyEnaQ3Ay-5,1030 galaxyEnaQ3Ay-5,1065 galaxyEnaQ3Ay-9,221 galaxyEnaQ3Ay-9,370 galaxyEnaQ3Ay-9,1030 galaxyEnaQ3Ay-9,1065 galaxyEnaQ3B-1-1-7,221 galaxyEnaQ3B-1-1-7,370 galaxyEnaQ3B-1-1-7,1030 galaxyEnaQ3B-1-1-7,1065 galaxyEnaQ3B-1-617-2,221 galaxyEnaQ3B-1-617-2,370 galaxyEnaQ3B-1-617-2,1030 galaxyEnaQ3B-1-617-2,1065 sarsCov2Phylo,130 sarsCov2Phylo,162 sarsCov2PhyloPub,141 sarsCov2PhyloPub,168 variantMuts,255 pantano abEscape,875 bloomEscMabAvg,879 bloomEscMax,885 bloomEscSerumAvg,880 bloomEscTop,883 escape,882 mccoy,875 rappuoli,882 paper Calu3_07hpi,299 ORFs,297 Vero6_05hpi,299 Vero6_24hpi,299 abEscape,290 bloomEscMabAvg,294 bloomEscMax,300 bloomEscSerumAvg,295 bloomEscTop,298 escape,297 gordon2,229 mccoy,290 pbmShanghai,140 pbmShanghai,273 pbmShanghai,296 rapid,208 rappuoli,297 targets,162 vaccines,88 weizmanOrfs,305 papers abEscape,64 bloomEscMabAvg,68 bloomEscMax,74 bloomEscSerumAvg,69 bloomEscTop,72 crisprDet,161 escape,71 mccoy,64 rappuoli,71 parallel Calu3_07hpi,196 ORFs,194 Q0_tracks,916 Q1_tracks,918 Q2_tracks,918 Q3_tracks,918 Vero6_05hpi,196 Vero6_24hpi,196 epitopes,264 galaxyEna,918 galaxyEnaQ0Ba-1,914 galaxyEnaQ0Ba-1-1,914 galaxyEnaQ0Ba-1-1-11,914 galaxyEnaQ0Ba-1-17,914 galaxyEnaQ0Ba-2,914 galaxyEnaQ1Ay-4,914 galaxyEnaQ1Ay-4-2,914 galaxyEnaQ1Ay-4-2-2,914 galaxyEnaQ1Ay-43,914 galaxyEnaQ1Ba-1-17,914 galaxyEnaQ2Ay-120,914 galaxyEnaQ2Ay-122,914 galaxyEnaQ2Ay-4,914 galaxyEnaQ2Ay-5,914 galaxyEnaQ2Ay-6,914 galaxyEnaQ3Ay-4,914 galaxyEnaQ3Ay-5,914 galaxyEnaQ3Ay-9,914 galaxyEnaQ3B-1-1-7,914 galaxyEnaQ3B-1-617-2,914 weizmanOrfs,202 parameters PhyloCSF_smooth,414 PhyloCSFpower,429 multiz7way,586 multiz7way,664 strainCons119way,936 strainCons119way,1013 strainCons119way,1970 strainCons44way,884 strainCons44way,961 strainCons44way,1565 vaccines,238 windowmaskerSdust,57 parent cpgIslandExt,83 cpgIslandExtUnmasked,86 cpgIslandSuper,83 parental recomb,147 recomb,212 recomb,242 parentheses gold,147 park multiz7way,939 strainCons119way,2317 strainCons44way,1912 vaccines,505 parker strainCons119way,1373 parsed Starr_Bloom,179 Starr_Bloom_bind,173 abEscape,579 abEscape,594 abEscape,610 addgene,157 bloomEscMabAvg,583 bloomEscMabAvg,598 bloomEscMabAvg,614 bloomEscMax,589 bloomEscMax,604 bloomEscMax,620 bloomEscSerumAvg,584 bloomEscSerumAvg,599 bloomEscSerumAvg,615 bloomEscTop,587 bloomEscTop,602 bloomEscTop,618 escape,586 escape,601 escape,617 mccoy,579 mccoy,594 mccoy,610 pond,204 rappuoli,586 rappuoli,601 rappuoli,617 treangen,216 parsimony nextstrainParsimony,2 nextstrainParsimony,3 nextstrainParsimony,97 nextstrainParsimony,166 nextstrainParsimony,205 nextstrainParsimony,210 nextstrainParsimony,249 nextstrainParsimony,282 nextstrainParsimony,328 recomb,207 recomb,222 parsing Q0_tracks,1053 Q1_tracks,1055 Q2_tracks,1055 Q3_tracks,1055 galaxyEna,1055 galaxyEnaQ0Ba-1,1051 galaxyEnaQ0Ba-1-1,1051 galaxyEnaQ0Ba-1-1-11,1051 galaxyEnaQ0Ba-1-17,1051 galaxyEnaQ0Ba-2,1051 galaxyEnaQ1Ay-4,1051 galaxyEnaQ1Ay-4-2,1051 galaxyEnaQ1Ay-4-2-2,1051 galaxyEnaQ1Ay-43,1051 galaxyEnaQ1Ba-1-17,1051 galaxyEnaQ2Ay-120,1051 galaxyEnaQ2Ay-122,1051 galaxyEnaQ2Ay-4,1051 galaxyEnaQ2Ay-5,1051 galaxyEnaQ2Ay-6,1051 galaxyEnaQ3Ay-4,1051 galaxyEnaQ3Ay-5,1051 galaxyEnaQ3Ay-9,1051 galaxyEnaQ3B-1-1-7,1051 galaxyEnaQ3B-1-617-2,1051 part Q0_tracks,509 Q1_tracks,511 Q2_tracks,511 Q3_tracks,511 galaxyEna,511 galaxyEnaQ0Ba-1,507 galaxyEnaQ0Ba-1-1,507 galaxyEnaQ0Ba-1-1-11,507 galaxyEnaQ0Ba-1-17,507 galaxyEnaQ0Ba-2,507 galaxyEnaQ1Ay-4,507 galaxyEnaQ1Ay-4-2,507 galaxyEnaQ1Ay-4-2-2,507 galaxyEnaQ1Ay-43,507 galaxyEnaQ1Ba-1-17,507 galaxyEnaQ2Ay-120,507 galaxyEnaQ2Ay-122,507 galaxyEnaQ2Ay-4,507 galaxyEnaQ2Ay-5,507 galaxyEnaQ2Ay-6,507 galaxyEnaQ3Ay-4,507 galaxyEnaQ3Ay-5,507 galaxyEnaQ3Ay-9,507 galaxyEnaQ3B-1-1-7,507 galaxyEnaQ3B-1-617-2,507 rfam,158 partial sarsCov2Phylo,263 sarsCov2Phylo,277 sarsCov2Phylo,279 sarsCov2Phylo,297 sarsCov2PhyloPub,270 sarsCov2PhyloPub,284 sarsCov2PhyloPub,286 sarsCov2PhyloPub,304 participating Q0_tracks,988 Q1_tracks,990 Q2_tracks,990 Q3_tracks,990 galaxyEna,990 galaxyEnaQ0Ba-1,986 galaxyEnaQ0Ba-1-1,986 galaxyEnaQ0Ba-1-1-11,986 galaxyEnaQ0Ba-1-17,986 galaxyEnaQ0Ba-2,986 galaxyEnaQ1Ay-4,986 galaxyEnaQ1Ay-4-2,986 galaxyEnaQ1Ay-4-2-2,986 galaxyEnaQ1Ay-43,986 galaxyEnaQ1Ba-1-17,986 galaxyEnaQ2Ay-120,986 galaxyEnaQ2Ay-122,986 galaxyEnaQ2Ay-4,986 galaxyEnaQ2Ay-5,986 galaxyEnaQ2Ay-6,986 galaxyEnaQ3Ay-4,986 galaxyEnaQ3Ay-5,986 galaxyEnaQ3Ay-9,986 galaxyEnaQ3B-1-1-7,986 galaxyEnaQ3B-1-617-2,986 particular Q0_tracks,568 Q0_tracks,816 Q0_tracks,1207 Q1_tracks,570 Q1_tracks,818 Q1_tracks,1209 Q2_tracks,570 Q2_tracks,818 Q2_tracks,1209 Q3_tracks,570 Q3_tracks,818 Q3_tracks,1209 Starr_Bloom,86 Starr_Bloom_bind,80 augustusGene,234 galaxyEna,570 galaxyEna,818 galaxyEna,1209 galaxyEnaQ0Ba-1,566 galaxyEnaQ0Ba-1,814 galaxyEnaQ0Ba-1,1205 galaxyEnaQ0Ba-1-1,566 galaxyEnaQ0Ba-1-1,814 galaxyEnaQ0Ba-1-1,1205 galaxyEnaQ0Ba-1-1-11,566 galaxyEnaQ0Ba-1-1-11,814 galaxyEnaQ0Ba-1-1-11,1205 galaxyEnaQ0Ba-1-17,566 galaxyEnaQ0Ba-1-17,814 galaxyEnaQ0Ba-1-17,1205 galaxyEnaQ0Ba-2,566 galaxyEnaQ0Ba-2,814 galaxyEnaQ0Ba-2,1205 galaxyEnaQ1Ay-4,566 galaxyEnaQ1Ay-4,814 galaxyEnaQ1Ay-4,1205 galaxyEnaQ1Ay-4-2,566 galaxyEnaQ1Ay-4-2,814 galaxyEnaQ1Ay-4-2,1205 galaxyEnaQ1Ay-4-2-2,566 galaxyEnaQ1Ay-4-2-2,814 galaxyEnaQ1Ay-4-2-2,1205 galaxyEnaQ1Ay-43,566 galaxyEnaQ1Ay-43,814 galaxyEnaQ1Ay-43,1205 galaxyEnaQ1Ba-1-17,566 galaxyEnaQ1Ba-1-17,814 galaxyEnaQ1Ba-1-17,1205 galaxyEnaQ2Ay-120,566 galaxyEnaQ2Ay-120,814 galaxyEnaQ2Ay-120,1205 galaxyEnaQ2Ay-122,566 galaxyEnaQ2Ay-122,814 galaxyEnaQ2Ay-122,1205 galaxyEnaQ2Ay-4,566 galaxyEnaQ2Ay-4,814 galaxyEnaQ2Ay-4,1205 galaxyEnaQ2Ay-5,566 galaxyEnaQ2Ay-5,814 galaxyEnaQ2Ay-5,1205 galaxyEnaQ2Ay-6,566 galaxyEnaQ2Ay-6,814 galaxyEnaQ2Ay-6,1205 galaxyEnaQ3Ay-4,566 galaxyEnaQ3Ay-4,814 galaxyEnaQ3Ay-4,1205 galaxyEnaQ3Ay-5,566 galaxyEnaQ3Ay-5,814 galaxyEnaQ3Ay-5,1205 galaxyEnaQ3Ay-9,566 galaxyEnaQ3Ay-9,814 galaxyEnaQ3Ay-9,1205 galaxyEnaQ3B-1-1-7,566 galaxyEnaQ3B-1-1-7,814 galaxyEnaQ3B-1-1-7,1205 galaxyEnaQ3B-1-617-2,566 galaxyEnaQ3B-1-617-2,814 galaxyEnaQ3B-1-617-2,1205 kimTranscripts,126 strainCons119way,283 strainCons119way,2026 strainCons44way,231 strainCons44way,1621 transcriptome,118 treangen,238 particularly cpgIslandExt,21 cpgIslandExtUnmasked,24 cpgIslandSuper,21 parts Q0_tracks,22 Q1_tracks,24 Q2_tracks,24 Q3_tracks,24 galaxyEna,24 galaxyEnaQ0Ba-1,20 galaxyEnaQ0Ba-1-1,20 galaxyEnaQ0Ba-1-1-11,20 galaxyEnaQ0Ba-1-17,20 galaxyEnaQ0Ba-2,20 galaxyEnaQ1Ay-4,20 galaxyEnaQ1Ay-4-2,20 galaxyEnaQ1Ay-4-2-2,20 galaxyEnaQ1Ay-43,20 galaxyEnaQ1Ba-1-17,20 galaxyEnaQ2Ay-120,20 galaxyEnaQ2Ay-122,20 galaxyEnaQ2Ay-4,20 galaxyEnaQ2Ay-5,20 galaxyEnaQ2Ay-6,20 galaxyEnaQ3Ay-4,20 galaxyEnaQ3Ay-5,20 galaxyEnaQ3Ay-9,20 galaxyEnaQ3B-1-1-7,20 galaxyEnaQ3B-1-617-2,20 paskov microdel,273 passaging abEscape,197 bloomEscMabAvg,201 bloomEscMax,207 bloomEscSerumAvg,202 bloomEscTop,205 escape,204 mccoy,197 rappuoli,204 patented swift,29 pathogen Q0_tracks,1281 Q1_tracks,1283 Q2_tracks,1283 Q3_tracks,1283 galaxyEna,1283 galaxyEnaQ0Ba-1,1279 galaxyEnaQ0Ba-1-1,1279 galaxyEnaQ0Ba-1-1-11,1279 galaxyEnaQ0Ba-1-17,1279 galaxyEnaQ0Ba-2,1279 galaxyEnaQ1Ay-4,1279 galaxyEnaQ1Ay-4-2,1279 galaxyEnaQ1Ay-4-2-2,1279 galaxyEnaQ1Ay-43,1279 galaxyEnaQ1Ba-1-17,1279 galaxyEnaQ2Ay-120,1279 galaxyEnaQ2Ay-122,1279 galaxyEnaQ2Ay-4,1279 galaxyEnaQ2Ay-5,1279 galaxyEnaQ2Ay-6,1279 galaxyEnaQ3Ay-4,1279 galaxyEnaQ3Ay-5,1279 galaxyEnaQ3Ay-9,1279 galaxyEnaQ3B-1-1-7,1279 galaxyEnaQ3B-1-617-2,1279 nextstrainClade,264 nextstrainFreq,399 nextstrainGene,213 nextstrainParsimony,466 nextstrainSamples,1019 pathogenic cas13Crispr,201 potPathoIndel,2 potPathoIndel,5 potPathoIndel,47 pathogenicity potPathoIndel,223 pathogens Q0_tracks,1290 Q1_tracks,1292 Q2_tracks,1292 Q3_tracks,1292 galaxyEna,1292 galaxyEnaQ0Ba-1,1288 galaxyEnaQ0Ba-1-1,1288 galaxyEnaQ0Ba-1-1-11,1288 galaxyEnaQ0Ba-1-17,1288 galaxyEnaQ0Ba-2,1288 galaxyEnaQ1Ay-4,1288 galaxyEnaQ1Ay-4-2,1288 galaxyEnaQ1Ay-4-2-2,1288 galaxyEnaQ1Ay-43,1288 galaxyEnaQ1Ba-1-17,1288 galaxyEnaQ2Ay-120,1288 galaxyEnaQ2Ay-122,1288 galaxyEnaQ2Ay-4,1288 galaxyEnaQ2Ay-5,1288 galaxyEnaQ2Ay-6,1288 galaxyEnaQ3Ay-4,1288 galaxyEnaQ3Ay-5,1288 galaxyEnaQ3Ay-9,1288 galaxyEnaQ3B-1-1-7,1288 galaxyEnaQ3B-1-617-2,1288 nextstrainFreq,283 nextstrainSamples,935 sarsCov2Phylo,885 sarsCov2PhyloPub,991 patient abEscape,28 abEscape,192 abEscape,206 abEscape,222 abEscape,260 abEscape,420 abEscape,568 bloomEscMabAvg,32 bloomEscMabAvg,196 bloomEscMabAvg,210 bloomEscMabAvg,226 bloomEscMabAvg,264 bloomEscMabAvg,424 bloomEscMabAvg,572 bloomEscMax,38 bloomEscMax,202 bloomEscMax,216 bloomEscMax,232 bloomEscMax,270 bloomEscMax,430 bloomEscMax,578 bloomEscSerumAvg,8 bloomEscSerumAvg,33 bloomEscSerumAvg,197 bloomEscSerumAvg,211 bloomEscSerumAvg,227 bloomEscSerumAvg,265 bloomEscSerumAvg,425 bloomEscSerumAvg,573 bloomEscTop,36 bloomEscTop,200 bloomEscTop,214 bloomEscTop,230 bloomEscTop,268 bloomEscTop,428 bloomEscTop,576 cas13Crispr,175 escape,35 escape,199 escape,213 escape,229 escape,267 escape,427 escape,575 mccoy,28 mccoy,192 mccoy,206 mccoy,222 mccoy,260 mccoy,420 mccoy,568 rapid,62 rappuoli,20 rappuoli,35 rappuoli,199 rappuoli,213 rappuoli,229 rappuoli,267 rappuoli,427 rappuoli,575 treangen,5 treangen,37 treangen,63 treangen,115 treangen,213 patients IgG_Z-score-_COVID-19_patients,5 IgG_Z-score-_COVID-19_patients,12 IgG_Z-score-_COVID-19_patients,37 IgM_Z-score-_COVID-19_patients,5 IgM_Z-score-_COVID-19_patients,12 IgM_Z-score-_COVID-19_patients,37 abEscape,90 bloomEscMabAvg,94 bloomEscMax,22 bloomEscMax,100 bloomEscSerumAvg,17 bloomEscSerumAvg,95 bloomEscTop,98 bloomEscTotal,22 bpmIggCovidSum,46 bpmIgmCovidSum,46 cas13Crispr,221 cd8escape,51 cd8escape,97 cd8escape,167 escape,97 mccoy,90 pbm,46 pbmShanghai,48 pbmShanghai,75 pbmShanghai,527 rappuoli,97 targets,7 targets,29 targets,92 targets,242 treangen,93 treangen,146 patterns Q0_tracks,398 Q0_tracks,911 Q1_tracks,400 Q1_tracks,913 Q2_tracks,400 Q2_tracks,913 Q3_tracks,400 Q3_tracks,913 augustusGene,56 galaxyEna,400 galaxyEna,913 galaxyEnaQ0Ba-1,396 galaxyEnaQ0Ba-1,909 galaxyEnaQ0Ba-1-1,396 galaxyEnaQ0Ba-1-1,909 galaxyEnaQ0Ba-1-1-11,396 galaxyEnaQ0Ba-1-1-11,909 galaxyEnaQ0Ba-1-17,396 galaxyEnaQ0Ba-1-17,909 galaxyEnaQ0Ba-2,396 galaxyEnaQ0Ba-2,909 galaxyEnaQ1Ay-4,396 galaxyEnaQ1Ay-4,909 galaxyEnaQ1Ay-4-2,396 galaxyEnaQ1Ay-4-2,909 galaxyEnaQ1Ay-4-2-2,396 galaxyEnaQ1Ay-4-2-2,909 galaxyEnaQ1Ay-43,396 galaxyEnaQ1Ay-43,909 galaxyEnaQ1Ba-1-17,396 galaxyEnaQ1Ba-1-17,909 galaxyEnaQ2Ay-120,396 galaxyEnaQ2Ay-120,909 galaxyEnaQ2Ay-122,396 galaxyEnaQ2Ay-122,909 galaxyEnaQ2Ay-4,396 galaxyEnaQ2Ay-4,909 galaxyEnaQ2Ay-5,396 galaxyEnaQ2Ay-5,909 galaxyEnaQ2Ay-6,396 galaxyEnaQ2Ay-6,909 galaxyEnaQ3Ay-4,396 galaxyEnaQ3Ay-4,909 galaxyEnaQ3Ay-5,396 galaxyEnaQ3Ay-5,909 galaxyEnaQ3Ay-9,396 galaxyEnaQ3Ay-9,909 galaxyEnaQ3B-1-1-7,396 galaxyEnaQ3B-1-1-7,909 galaxyEnaQ3B-1-617-2,396 galaxyEnaQ3B-1-617-2,909 nextstrainClade,46 nextstrainFreq,46 nextstrainGene,42 nextstrainParsimony,63 nextstrainSamples,57 nextstrainSamples,347 sarsCov2Phylo,351 sarsCov2PhyloPub,362 paul abEscape,776 bloomEscMabAvg,780 bloomEscMax,786 bloomEscSerumAvg,781 bloomEscTop,784 escape,783 mccoy,776 rappuoli,783 resist,41 paxlovid resist,34 pbm IgG_Z-score-_COVID-19_patients,374 IgM_Z-score-_COVID-19_patients,374 bpmIggCovidSum,383 bpmIgmCovidSum,383 pbm,383 pbmcs cd8escape,155 targets,36 pc phyloGenes,530 pcr kimIvtCov,9 kimIvtCov,38 kimIvtCov,50 kimIvtCov,112 rapid,54 rapid,68 rapid,86 rapid,103 swift,31 pdb contacts,1 contacts,8 contacts,31 contacts,61 contacts,94 pdb,1 pdb,6 pdb,29 pdb,31 pdb,66 pdb,86 pdb,98 pdb,101 pdb,107 resistPred,66 pdf-2180 strainCons119way,1349 pe pdb,148 peacock variantMuts,1293 pedersen multiz7way,1040 strainCons119way,2418 strainCons44way,2013 peiris primers,170 pending kimNp,125 kimRnaMod,250 penn multiz7way,52 multiz7way,841 multiz7way,896 strainCons119way,145 strainCons119way,2219 strainCons119way,2274 strainCons44way,93 strainCons44way,1814 strainCons44way,1869 pennsylvania multiz7way,1240 strainCons119way,2618 strainCons44way,2213 pept bpmIggCovidSum,2 bpmIgmCovidSum,2 pbm,2 pbmShanghai,3 peptide IgG_Z-score-_COVID-19_patients,7 IgG_Z-score-_COVID-19_patients,48 IgM_Z-score-_COVID-19_patients,7 IgM_Z-score-_COVID-19_patients,48 bpmIggCovidSum,8 bpmIggCovidSum,57 bpmIgmCovidSum,8 bpmIgmCovidSum,57 igg,6 iggAllSum,8 igm,6 igmAllSum,8 ncbiProducts,7 pbm,6 pbm,57 pbmShanghai,8 pbmShanghai,57 pbmShanghai,203 pbmShanghai,210 rosettaMhc,64 rosettaMhc,152 targets,46 targets,75 targets,121 targets,128 targets,138 targets,152 targets,169 targets,175 unipCov2AliSwissprot,103 unipCov2Chain,288 unipCov2Chain,374 unipCov2DisulfBond,284 unipCov2DisulfBond,370 unipCov2Domain,283 unipCov2Domain,369 unipCov2LocCytopl,283 unipCov2LocCytopl,369 unipCov2LocExtra,283 unipCov2LocExtra,369 unipCov2LocSignal,284 unipCov2LocSignal,370 unipCov2LocTransMemb,284 unipCov2LocTransMemb,370 unipCov2Modif,287 unipCov2Modif,373 unipCov2Mut,284 unipCov2Mut,370 unipCov2Other,284 unipCov2Other,370 unipCov2Repeat,282 unipCov2Repeat,368 unipCov2Struct,286 unipCov2Struct,372 variantMuts,733 peptides IgG_Z-score-_COVID-19_patients,25 IgG_Z-score-_COVID-19_patients,83 IgG_Z-score-_COVID-19_patients,94 IgG_Z-score-_COVID-19_patients,198 IgM_Z-score-_COVID-19_patients,25 IgM_Z-score-_COVID-19_patients,83 IgM_Z-score-_COVID-19_patients,94 IgM_Z-score-_COVID-19_patients,198 M1_library,3 M1_library,9 M2_library,3 M2_library,9 bpmIggCovidSum,34 bpmIggCovidSum,92 bpmIggCovidSum,103 bpmIggCovidSum,207 bpmIgmCovidSum,34 bpmIgmCovidSum,92 bpmIgmCovidSum,103 bpmIgmCovidSum,207 cd8escape,77 ncbiProducts,46 pbm,34 pbm,92 pbm,103 pbm,207 pbmShanghai,37 pbmShanghai,86 pbmShanghai,149 pbmShanghai,160 pbmShanghai,336 targets,52 targets,124 targets,193 targets,202 unipCov2Chain,124 unipCov2Chain,323 unipCov2DisulfBond,120 unipCov2DisulfBond,319 unipCov2Domain,119 unipCov2Domain,318 unipCov2LocCytopl,119 unipCov2LocCytopl,318 unipCov2LocExtra,119 unipCov2LocExtra,318 unipCov2LocSignal,2 unipCov2LocSignal,5 unipCov2LocSignal,120 unipCov2LocSignal,319 unipCov2LocTransMemb,120 unipCov2LocTransMemb,319 unipCov2Modif,123 unipCov2Modif,322 unipCov2Mut,120 unipCov2Mut,319 unipCov2Other,120 unipCov2Other,319 unipCov2Repeat,118 unipCov2Repeat,317 unipCov2Struct,122 unipCov2Struct,321 peptidome rosettaMhc,42 per IgG_Z-score-_COVID-19_patients,202 IgM_Z-score-_COVID-19_patients,202 abEscape,384 abEscape,391 abEscape,443 abEscape,458 abEscape,475 bloomEscMabAvg,388 bloomEscMabAvg,395 bloomEscMabAvg,447 bloomEscMabAvg,462 bloomEscMabAvg,479 bloomEscMax,13 bloomEscMax,394 bloomEscMax,401 bloomEscMax,453 bloomEscMax,468 bloomEscMax,485 bloomEscSerumAvg,389 bloomEscSerumAvg,396 bloomEscSerumAvg,448 bloomEscSerumAvg,463 bloomEscSerumAvg,480 bloomEscTop,392 bloomEscTop,399 bloomEscTop,451 bloomEscTop,466 bloomEscTop,483 bloomEscTotal,13 bpmIggCovidSum,20 bpmIggCovidSum,211 bpmIgmCovidSum,20 bpmIgmCovidSum,211 escape,391 escape,398 escape,450 escape,465 escape,482 kimRnaMod,109 mccoy,384 mccoy,391 mccoy,443 mccoy,458 mccoy,475 nextstrainSamples,500 pbm,211 rappuoli,391 rappuoli,398 rappuoli,450 rappuoli,465 rappuoli,482 recomb,57 treangen,131 variantMuts,829 per-batch Q0_tracks,897 Q0_tracks,902 Q1_tracks,899 Q1_tracks,904 Q2_tracks,899 Q2_tracks,904 Q3_tracks,899 Q3_tracks,904 galaxyEna,899 galaxyEna,904 galaxyEnaQ0Ba-1,895 galaxyEnaQ0Ba-1,900 galaxyEnaQ0Ba-1-1,895 galaxyEnaQ0Ba-1-1,900 galaxyEnaQ0Ba-1-1-11,895 galaxyEnaQ0Ba-1-1-11,900 galaxyEnaQ0Ba-1-17,895 galaxyEnaQ0Ba-1-17,900 galaxyEnaQ0Ba-2,895 galaxyEnaQ0Ba-2,900 galaxyEnaQ1Ay-4,895 galaxyEnaQ1Ay-4,900 galaxyEnaQ1Ay-4-2,895 galaxyEnaQ1Ay-4-2,900 galaxyEnaQ1Ay-4-2-2,895 galaxyEnaQ1Ay-4-2-2,900 galaxyEnaQ1Ay-43,895 galaxyEnaQ1Ay-43,900 galaxyEnaQ1Ba-1-17,895 galaxyEnaQ1Ba-1-17,900 galaxyEnaQ2Ay-120,895 galaxyEnaQ2Ay-120,900 galaxyEnaQ2Ay-122,895 galaxyEnaQ2Ay-122,900 galaxyEnaQ2Ay-4,895 galaxyEnaQ2Ay-4,900 galaxyEnaQ2Ay-5,895 galaxyEnaQ2Ay-5,900 galaxyEnaQ2Ay-6,895 galaxyEnaQ2Ay-6,900 galaxyEnaQ3Ay-4,895 galaxyEnaQ3Ay-4,900 galaxyEnaQ3Ay-5,895 galaxyEnaQ3Ay-5,900 galaxyEnaQ3Ay-9,895 galaxyEnaQ3Ay-9,900 galaxyEnaQ3B-1-1-7,895 galaxyEnaQ3B-1-1-7,900 galaxyEnaQ3B-1-617-2,895 galaxyEnaQ3B-1-617-2,900 per-sample Q0_tracks,211 Q0_tracks,895 Q1_tracks,213 Q1_tracks,897 Q2_tracks,213 Q2_tracks,897 Q3_tracks,213 Q3_tracks,897 galaxyEna,213 galaxyEna,897 galaxyEnaQ0Ba-1,209 galaxyEnaQ0Ba-1,893 galaxyEnaQ0Ba-1-1,209 galaxyEnaQ0Ba-1-1,893 galaxyEnaQ0Ba-1-1-11,209 galaxyEnaQ0Ba-1-1-11,893 galaxyEnaQ0Ba-1-17,209 galaxyEnaQ0Ba-1-17,893 galaxyEnaQ0Ba-2,209 galaxyEnaQ0Ba-2,893 galaxyEnaQ1Ay-4,209 galaxyEnaQ1Ay-4,893 galaxyEnaQ1Ay-4-2,209 galaxyEnaQ1Ay-4-2,893 galaxyEnaQ1Ay-4-2-2,209 galaxyEnaQ1Ay-4-2-2,893 galaxyEnaQ1Ay-43,209 galaxyEnaQ1Ay-43,893 galaxyEnaQ1Ba-1-17,209 galaxyEnaQ1Ba-1-17,893 galaxyEnaQ2Ay-120,209 galaxyEnaQ2Ay-120,893 galaxyEnaQ2Ay-122,209 galaxyEnaQ2Ay-122,893 galaxyEnaQ2Ay-4,209 galaxyEnaQ2Ay-4,893 galaxyEnaQ2Ay-5,209 galaxyEnaQ2Ay-5,893 galaxyEnaQ2Ay-6,209 galaxyEnaQ2Ay-6,893 galaxyEnaQ3Ay-4,209 galaxyEnaQ3Ay-4,893 galaxyEnaQ3Ay-5,209 galaxyEnaQ3Ay-5,893 galaxyEnaQ3Ay-9,209 galaxyEnaQ3Ay-9,893 galaxyEnaQ3B-1-1-7,209 galaxyEnaQ3B-1-1-7,893 galaxyEnaQ3B-1-617-2,209 galaxyEnaQ3B-1-617-2,893 nextstrainSamples,854 percent gc5BaseBw,2 gc5BaseBw,4 gc5BaseBw,14 multiz7way,130 multiz7way,166 strainCons119way,479 strainCons119way,515 strainCons44way,427 strainCons44way,463 percentage cas13Crispr,151 cas13Crispr,170 cpgIslandExt,345 cpgIslandExtUnmasked,348 cpgIslandSuper,345 gc5BaseBw,18 sarsCov2Phylo,791 percentident vaccines,287 pereyaslov sarsCov2Phylo,991 sarsCov2PhyloPub,1111 perfect cas13Crispr,161 cas13Crispr,190 cas13Crispr,247 cas13Crispr,283 problematicSites,365 perfectly pond,179 perforin cd8escape,63 perform problematicSites,77 performance sarsCov2Phylo,1034 sarsCov2PhyloPub,1154 performed Q0_tracks,182 Q0_tracks,1037 Q1_tracks,184 Q1_tracks,1039 Q2_tracks,184 Q2_tracks,1039 Q3_tracks,184 Q3_tracks,1039 cd8escape,89 cd8escape,139 cd8escape,153 cpgIslandExt,405 cpgIslandExtUnmasked,408 cpgIslandSuper,405 galaxyEna,184 galaxyEna,1039 galaxyEnaQ0Ba-1,180 galaxyEnaQ0Ba-1,1035 galaxyEnaQ0Ba-1-1,180 galaxyEnaQ0Ba-1-1,1035 galaxyEnaQ0Ba-1-1-11,180 galaxyEnaQ0Ba-1-1-11,1035 galaxyEnaQ0Ba-1-17,180 galaxyEnaQ0Ba-1-17,1035 galaxyEnaQ0Ba-2,180 galaxyEnaQ0Ba-2,1035 galaxyEnaQ1Ay-4,180 galaxyEnaQ1Ay-4,1035 galaxyEnaQ1Ay-4-2,180 galaxyEnaQ1Ay-4-2,1035 galaxyEnaQ1Ay-4-2-2,180 galaxyEnaQ1Ay-4-2-2,1035 galaxyEnaQ1Ay-43,180 galaxyEnaQ1Ay-43,1035 galaxyEnaQ1Ba-1-17,180 galaxyEnaQ1Ba-1-17,1035 galaxyEnaQ2Ay-120,180 galaxyEnaQ2Ay-120,1035 galaxyEnaQ2Ay-122,180 galaxyEnaQ2Ay-122,1035 galaxyEnaQ2Ay-4,180 galaxyEnaQ2Ay-4,1035 galaxyEnaQ2Ay-5,180 galaxyEnaQ2Ay-5,1035 galaxyEnaQ2Ay-6,180 galaxyEnaQ2Ay-6,1035 galaxyEnaQ3Ay-4,180 galaxyEnaQ3Ay-4,1035 galaxyEnaQ3Ay-5,180 galaxyEnaQ3Ay-5,1035 galaxyEnaQ3Ay-9,180 galaxyEnaQ3Ay-9,1035 galaxyEnaQ3B-1-1-7,180 galaxyEnaQ3B-1-1-7,1035 galaxyEnaQ3B-1-617-2,180 galaxyEnaQ3B-1-617-2,1035 multiz7way,515 pyle,38 rapid,57 strainCons119way,865 strainCons44way,813 performing strainCons119way,2042 strainCons44way,1637 performs Q0_tracks,855 Q1_tracks,857 Q2_tracks,857 Q3_tracks,857 galaxyEna,857 galaxyEnaQ0Ba-1,853 galaxyEnaQ0Ba-1-1,853 galaxyEnaQ0Ba-1-1-11,853 galaxyEnaQ0Ba-1-17,853 galaxyEnaQ0Ba-2,853 galaxyEnaQ1Ay-4,853 galaxyEnaQ1Ay-4-2,853 galaxyEnaQ1Ay-4-2-2,853 galaxyEnaQ1Ay-43,853 galaxyEnaQ1Ba-1-17,853 galaxyEnaQ2Ay-120,853 galaxyEnaQ2Ay-122,853 galaxyEnaQ2Ay-4,853 galaxyEnaQ2Ay-5,853 galaxyEnaQ2Ay-6,853 galaxyEnaQ3Ay-4,853 galaxyEnaQ3Ay-5,853 galaxyEnaQ3Ay-9,853 galaxyEnaQ3B-1-1-7,853 galaxyEnaQ3B-1-617-2,853 perhaps cpgIslandExt,137 cpgIslandExtUnmasked,140 cpgIslandSuper,137 problematicSites,79 periods Q0_tracks,300 Q1_tracks,302 Q2_tracks,302 Q3_tracks,302 galaxyEna,302 galaxyEnaQ0Ba-1,298 galaxyEnaQ0Ba-1-1,298 galaxyEnaQ0Ba-1-1-11,298 galaxyEnaQ0Ba-1-17,298 galaxyEnaQ0Ba-2,298 galaxyEnaQ1Ay-4,298 galaxyEnaQ1Ay-4-2,298 galaxyEnaQ1Ay-4-2-2,298 galaxyEnaQ1Ay-43,298 galaxyEnaQ1Ba-1-17,298 galaxyEnaQ2Ay-120,298 galaxyEnaQ2Ay-122,298 galaxyEnaQ2Ay-4,298 galaxyEnaQ2Ay-5,298 galaxyEnaQ2Ay-6,298 galaxyEnaQ3Ay-4,298 galaxyEnaQ3Ay-5,298 galaxyEnaQ3Ay-9,298 galaxyEnaQ3B-1-1-7,298 galaxyEnaQ3B-1-617-2,298 peritonitis strainCons119way,1481 permission nextstrainFreq,289 nextstrainSamples,828 nextstrainSamples,941 resist,39 sarsCov2Phylo,891 sarsCov2PhyloPub,997 personal Q0_tracks,80 Q1_tracks,82 Q2_tracks,82 Q3_tracks,82 galaxyEna,82 galaxyEnaQ0Ba-1,78 galaxyEnaQ0Ba-1-1,78 galaxyEnaQ0Ba-1-1-11,78 galaxyEnaQ0Ba-1-17,78 galaxyEnaQ0Ba-2,78 galaxyEnaQ1Ay-4,78 galaxyEnaQ1Ay-4-2,78 galaxyEnaQ1Ay-4-2-2,78 galaxyEnaQ1Ay-43,78 galaxyEnaQ1Ba-1-17,78 galaxyEnaQ2Ay-120,78 galaxyEnaQ2Ay-122,78 galaxyEnaQ2Ay-4,78 galaxyEnaQ2Ay-5,78 galaxyEnaQ2Ay-6,78 galaxyEnaQ3Ay-4,78 galaxyEnaQ3Ay-5,78 galaxyEnaQ3Ay-9,78 galaxyEnaQ3B-1-1-7,78 galaxyEnaQ3B-1-617-2,78 persuasive phyloGenes,170 peru variantAaMutsV2_C_37,7 variantMuts,634 variantNucMutsV2_C_37,7 peter microdel,228 microdel,280 vaccines,570 peters epitopes,326 iedb,113 pfizer vaccines,5 vaccines,29 vaccines,42 vaccines,218 vaccines,539 pfizer-biontech vaccines,546 pfu pyle,229 ph.d multiz7way,1238 strainCons119way,2616 strainCons44way,2211 pharmaceuticals unipCov2AliSwissprot,429 unipCov2Interest,312 phast multiz7way,856 strainCons119way,125 strainCons119way,1722 strainCons119way,2003 strainCons119way,2234 strainCons44way,73 strainCons44way,1317 strainCons44way,1598 strainCons44way,1829 phastcons multiz7way,847 multiz7way,979 strainCons119way,37 strainCons119way,120 strainCons119way,156 strainCons119way,163 strainCons119way,236 strainCons119way,252 strainCons119way,372 strainCons119way,388 strainCons119way,1672 strainCons119way,1784 strainCons119way,1787 strainCons119way,1837 strainCons119way,1931 strainCons119way,1959 strainCons119way,1969 strainCons119way,2073 strainCons119way,2225 strainCons119way,2357 strainCons119wayViewphastcons,3 strainCons44way,34 strainCons44way,68 strainCons44way,104 strainCons44way,111 strainCons44way,184 strainCons44way,200 strainCons44way,320 strainCons44way,336 strainCons44way,1267 strainCons44way,1379 strainCons44way,1382 strainCons44way,1432 strainCons44way,1526 strainCons44way,1554 strainCons44way,1564 strainCons44way,1668 strainCons44way,1820 strainCons44way,1952 strainCons44wayViewphastcons,4 strainPhastCons119way,1 strainPhastCons119way,8 strainPhastCons44way,2 strainPhastCons44way,10 phil unipCov2Chain,656 unipCov2DisulfBond,652 unipCov2Domain,651 unipCov2LocCytopl,651 unipCov2LocExtra,651 unipCov2LocSignal,652 unipCov2LocTransMemb,652 unipCov2Modif,655 unipCov2Mut,652 unipCov2Other,652 unipCov2Repeat,650 unipCov2Struct,654 phosph unipCov2Modif,2 phosphorylation unipCov2Chain,399 unipCov2DisulfBond,395 unipCov2Domain,394 unipCov2LocCytopl,394 unipCov2LocExtra,394 unipCov2LocSignal,395 unipCov2LocTransMemb,395 unipCov2Modif,7 unipCov2Modif,398 unipCov2Mut,395 unipCov2Other,395 unipCov2Repeat,393 unipCov2Struct,397 phylip multiz7way,757 strainCons119way,1517 strainCons44way,1187 phylo-hmm strainCons119way,1795 strainCons119way,1841 strainCons119way,1877 strainCons119way,2099 strainCons44way,1390 strainCons44way,1436 strainCons44way,1472 strainCons44way,1694 phylo-hmms multiz7way,978 strainCons119way,2356 strainCons44way,1951 phylocsf PhyloCSF_minus_1,4 PhyloCSF_minus_2,4 PhyloCSF_minus_3,4 PhyloCSF_plus_1,2 PhyloCSF_plus_1,5 PhyloCSF_plus_2,2 PhyloCSF_plus_2,5 PhyloCSF_plus_3,2 PhyloCSF_plus_3,5 PhyloCSF_smooth,1 PhyloCSF_smooth,2 PhyloCSF_smooth,15 PhyloCSF_smooth,26 PhyloCSF_smooth,65 PhyloCSF_smooth,91 PhyloCSF_smooth,117 PhyloCSF_smooth,123 PhyloCSF_smooth,127 PhyloCSF_smooth,131 PhyloCSF_smooth,177 PhyloCSF_smooth,180 PhyloCSF_smooth,229 PhyloCSF_smooth,246 PhyloCSF_smooth,381 PhyloCSF_smooth,413 PhyloCSF_smooth,458 PhyloCSF_smooth,476 PhyloCSF_smooth,560 PhyloCSF_smooth,588 PhyloCSF_smooth,688 PhyloCSF_smooth,709 PhyloCSF_smooth,764 PhyloCSFgenes,1 PhyloCSFgenes,3 PhyloCSFpower,1 PhyloCSFpower,12 PhyloCSFpower,17 PhyloCSFpower,30 PhyloCSFpower,41 PhyloCSFpower,80 PhyloCSFpower,106 PhyloCSFpower,132 PhyloCSFpower,138 PhyloCSFpower,142 PhyloCSFpower,146 PhyloCSFpower,192 PhyloCSFpower,195 PhyloCSFpower,244 PhyloCSFpower,261 PhyloCSFpower,398 PhyloCSFpower,428 PhyloCSFpower,473 PhyloCSFpower,491 PhyloCSFpower,575 PhyloCSFpower,603 PhyloCSFpower,648 PhyloCSFpower,654 PhyloCSFpower,680 PhyloCSFpower,743 PhyloCSFrejected,1 PhyloCSFrejected,7 phyloGenes,1 phyloGenes,3 phyloGenes,28 phyloGenes,73 phyloGenes,147 phyloGenes,480 phyloGenes,501 phylocsf-1 PhyloCSF_minus_1,2 phylocsf-2 PhyloCSF_minus_2,2 phylocsf-3 PhyloCSF_minus_3,2 phylocsfgenes.bb phyloGenes,420 phylodynamic nextstrainFreq,420 nextstrainSamples,1040 phylofit multiz7way,849 strainCons119way,1718 strainCons119way,2227 strainCons44way,1313 strainCons44way,1822 phylogenes phyloGenes,419 phylogenetic multiz7way,741 multiz7way,811 multiz7way,1083 nextstrainFreq,39 nextstrainFreq,77 nextstrainFreq,129 nextstrainParsimony,9 nextstrainParsimony,56 nextstrainParsimony,94 nextstrainParsimony,274 nextstrainParsimony,332 nextstrainParsimony,381 nextstrainSamples,176 nextstrainSamples,208 nextstrainSamples,341 nextstrainSamples,458 nextstrainSamples,559 nextstrainSamples,586 nextstrainSamples,644 nextstrainSamples,706 problematicSites,20 recomb,26 recomb,98 recomb,109 recomb,158 recomb,238 sarsCov2Phylo,3 sarsCov2Phylo,24 sarsCov2Phylo,72 sarsCov2Phylo,160 sarsCov2Phylo,345 sarsCov2Phylo,488 sarsCov2Phylo,652 sarsCov2Phylo,1162 sarsCov2PhyloPub,3 sarsCov2PhyloPub,22 sarsCov2PhyloPub,86 sarsCov2PhyloPub,166 sarsCov2PhyloPub,356 sarsCov2PhyloPub,517 sarsCov2PhyloPub,676 sarsCov2PhyloPub,750 sarsCov2PhyloPub,861 sarsCov2PhyloPub,898 sarsCov2PhyloPub,1295 strainCons119way,31 strainCons119way,1501 strainCons119way,1668 strainCons119way,1676 strainCons119way,2461 strainCons44way,28 strainCons44way,1171 strainCons44way,1263 strainCons44way,1271 strainCons44way,2056 variantMuts,191 phylogeneticdistance multiz7way,697 strainCons119way,1046 strainCons44way,994 phylogenetics sarsCov2PhyloPub,1245 phylogenies multiz7way,1024 nextstrainFreq,328 nextstrainSamples,1072 problematicSites,605 recomb,94 sarsCov2Phylo,1116 strainCons119way,2402 strainCons44way,1997 phylogenomics recomb,346 phylogeny nextstrainClade,39 recomb,204 recomb,233 sarsCov2Phylo,1 sarsCov2PhyloPub,1 sarsCov2PhyloPub,1043 strainCons119way,1882 strainCons119way,2022 strainCons44way,1477 strainCons44way,1617 variantMuts,1437 phylop multiz7way,848 multiz7way,981 strainCons119way,33 strainCons119way,122 strainCons119way,210 strainCons119way,227 strainCons119way,269 strainCons119way,305 strainCons119way,326 strainCons119way,390 strainCons119way,1674 strainCons119way,1767 strainCons119way,1979 strainCons119way,1982 strainCons119way,2226 strainCons119way,2359 strainCons119wayViewphyloP,3 strainCons44way,30 strainCons44way,70 strainCons44way,158 strainCons44way,175 strainCons44way,217 strainCons44way,253 strainCons44way,274 strainCons44way,338 strainCons44way,1269 strainCons44way,1362 strainCons44way,1574 strainCons44way,1577 strainCons44way,1821 strainCons44way,1954 strainCons44wayViewphyloP,3 strainPhyloP119way,1 strainPhyloP119way,8 strainPhyloP44way,2 strainPhyloP44way,10 phylopng multiz7way,906 strainCons119way,2284 strainCons44way,1879 physically rosettaMhc,75 piccini abEscape,863 bloomEscMabAvg,867 bloomEscMax,873 bloomEscSerumAvg,868 bloomEscTop,871 escape,870 mccoy,863 rappuoli,870 picked Q0_tracks,887 Q1_tracks,889 Q2_tracks,889 Q3_tracks,889 galaxyEna,889 galaxyEnaQ0Ba-1,885 galaxyEnaQ0Ba-1-1,885 galaxyEnaQ0Ba-1-1-11,885 galaxyEnaQ0Ba-1-17,885 galaxyEnaQ0Ba-2,885 galaxyEnaQ1Ay-4,885 galaxyEnaQ1Ay-4-2,885 galaxyEnaQ1Ay-4-2-2,885 galaxyEnaQ1Ay-43,885 galaxyEnaQ1Ba-1-17,885 galaxyEnaQ2Ay-120,885 galaxyEnaQ2Ay-122,885 galaxyEnaQ2Ay-4,885 galaxyEnaQ2Ay-5,885 galaxyEnaQ2Ay-6,885 galaxyEnaQ3Ay-4,885 galaxyEnaQ3Ay-5,885 galaxyEnaQ3Ay-9,885 galaxyEnaQ3B-1-1-7,885 galaxyEnaQ3B-1-617-2,885 picking strainCons119way,265 strainCons44way,213 pipeline multiz7way,58 nextstrainClade,160 nextstrainFreq,56 nextstrainFreq,152 nextstrainGene,110 nextstrainParsimony,73 nextstrainParsimony,309 nextstrainSamples,640 sarsCov2Phylo,81 sarsCov2Phylo,571 sarsCov2Phylo,581 sarsCov2Phylo,867 sarsCov2PhyloPub,93 sarsCov2PhyloPub,596 sarsCov2PhyloPub,608 sarsCov2PhyloPub,973 strainCons119way,151 strainCons44way,99 unipCov2AliSwissprot,214 unipCov2Chain,467 unipCov2DisulfBond,463 unipCov2Domain,462 unipCov2Interest,143 unipCov2LocCytopl,462 unipCov2LocExtra,462 unipCov2LocSignal,463 unipCov2LocTransMemb,463 unipCov2Modif,466 unipCov2Mut,463 unipCov2Other,463 unipCov2Repeat,461 unipCov2Struct,465 variantMuts,967 pixel nextstrainSamples,380 sarsCov2Phylo,384 sarsCov2PhyloPub,413 pixels nextstrainSamples,359 nextstrainSamples,370 nextstrainSamples,383 nextstrainSamples,499 nextstrainSamples,532 sarsCov2Phylo,363 sarsCov2Phylo,374 sarsCov2Phylo,387 sarsCov2Phylo,531 sarsCov2PhyloPub,392 sarsCov2PhyloPub,403 sarsCov2PhyloPub,416 sarsCov2PhyloPub,556 place vaccines,84 placed multiz7way,679 nextstrainSamples,353 sarsCov2Phylo,357 sarsCov2PhyloPub,386 strainCons119way,1028 strainCons44way,976 placement recomb,229 sarsCov2PhyloPub,1238 placements recomb,99 plasma abEscape,899 bloomEscMabAvg,903 bloomEscMax,909 bloomEscSerumAvg,904 bloomEscTop,907 escape,906 mccoy,899 rappuoli,16 rappuoli,906 plasmid addgene,4 addgene,75 addgene,100 addgene,122 addgene,165 addgene,196 addgene,257 addgene,261 plasmids addgene,2 addgene,20 addgene,28 addgene,46 addgene,80 platform Q0_tracks,102 Q1_tracks,104 Q2_tracks,104 Q3_tracks,104 galaxyEna,104 galaxyEnaQ0Ba-1,100 galaxyEnaQ0Ba-1-1,100 galaxyEnaQ0Ba-1-1-11,100 galaxyEnaQ0Ba-1-17,100 galaxyEnaQ0Ba-2,100 galaxyEnaQ1Ay-4,100 galaxyEnaQ1Ay-4-2,100 galaxyEnaQ1Ay-4-2-2,100 galaxyEnaQ1Ay-43,100 galaxyEnaQ1Ba-1-17,100 galaxyEnaQ2Ay-120,100 galaxyEnaQ2Ay-122,100 galaxyEnaQ2Ay-4,100 galaxyEnaQ2Ay-5,100 galaxyEnaQ2Ay-6,100 galaxyEnaQ3Ay-4,100 galaxyEnaQ3Ay-5,100 galaxyEnaQ3Ay-9,100 galaxyEnaQ3B-1-1-7,100 galaxyEnaQ3B-1-617-2,100 platform-specific Q0_tracks,840 Q1_tracks,842 Q2_tracks,842 Q3_tracks,842 galaxyEna,842 galaxyEnaQ0Ba-1,838 galaxyEnaQ0Ba-1-1,838 galaxyEnaQ0Ba-1-1-11,838 galaxyEnaQ0Ba-1-17,838 galaxyEnaQ0Ba-2,838 galaxyEnaQ1Ay-4,838 galaxyEnaQ1Ay-4-2,838 galaxyEnaQ1Ay-4-2-2,838 galaxyEnaQ1Ay-43,838 galaxyEnaQ1Ba-1-17,838 galaxyEnaQ2Ay-120,838 galaxyEnaQ2Ay-122,838 galaxyEnaQ2Ay-4,838 galaxyEnaQ2Ay-5,838 galaxyEnaQ2Ay-6,838 galaxyEnaQ3Ay-4,838 galaxyEnaQ3Ay-5,838 galaxyEnaQ3Ay-9,838 galaxyEnaQ3B-1-1-7,838 galaxyEnaQ3B-1-617-2,838 please Calu3_07hpi,328 IgG_Z-score-_COVID-19_patients,384 IgM_Z-score-_COVID-19_patients,384 ORFs,326 PhyloCSF_smooth,653 PhyloCSF_smooth,691 PhyloCSFpower,657 Q0_tracks,1164 Q1_tracks,1166 Q2_tracks,1166 Q3_tracks,1166 Starr_Bloom,144 Starr_Bloom,220 Starr_Bloom_bind,138 Starr_Bloom_bind,214 Vero6_05hpi,328 Vero6_24hpi,328 abEscape,672 addgene,65 artic,166 articV4,166 articV4_1,179 bloomEscMabAvg,676 bloomEscMax,682 bloomEscSerumAvg,677 bloomEscTop,680 bpmIggCovidSum,393 bpmIgmCovidSum,393 cas13Crispr,451 contacts,379 escape,679 galaxyEna,1166 galaxyEnaQ0Ba-1,1162 galaxyEnaQ0Ba-1-1,1162 galaxyEnaQ0Ba-1-1-11,1162 galaxyEnaQ0Ba-1-17,1162 galaxyEnaQ0Ba-2,1162 galaxyEnaQ1Ay-4,1162 galaxyEnaQ1Ay-4-2,1162 galaxyEnaQ1Ay-4-2-2,1162 galaxyEnaQ1Ay-43,1162 galaxyEnaQ1Ba-1-17,1162 galaxyEnaQ2Ay-120,1162 galaxyEnaQ2Ay-122,1162 galaxyEnaQ2Ay-4,1162 galaxyEnaQ2Ay-5,1162 galaxyEnaQ2Ay-6,1162 galaxyEnaQ3Ay-4,1162 galaxyEnaQ3Ay-5,1162 galaxyEnaQ3Ay-9,1162 galaxyEnaQ3B-1-1-7,1162 galaxyEnaQ3B-1-617-2,1162 icshape,163 kimRnaMod,213 kimTranscripts,431 mccoy,672 microdel,170 ncbiGeneBGP,146 ncbiProducts,162 nextstrainFreq,251 nextstrainFreq,302 nextstrainFreq,344 nextstrainSamples,954 pbm,393 pbmShanghai,476 phyloGenes,428 phyloGenes,484 poranHla1,241 poranHla2,241 primers,115 publicAnnots,64 rapid,320 rappuoli,679 resist,123 resistPred,86 resistPred,215 rosettaMhc,380 sarsCov2Phylo,904 sarsCov2PhyloPub,1010 spikeMuts,338 swift,249 transcriptome,437 unipCov2AliSwissprot,383 unipCov2Chain,613 unipCov2DisulfBond,609 unipCov2Domain,608 unipCov2LocCytopl,608 unipCov2LocExtra,608 unipCov2LocSignal,609 unipCov2LocTransMemb,609 unipCov2Modif,612 unipCov2Mut,609 unipCov2Other,609 unipCov2Repeat,607 unipCov2Struct,611 variantMuts,1022 varskip,172 weizmanOrfs,334 plessis sarsCov2Phylo,948 sarsCov2PhyloPub,1068 variantMuts,1255 plos Q0_tracks,1289 Q1_tracks,1291 Q2_tracks,1291 Q3_tracks,1291 galaxyEna,1291 galaxyEnaQ0Ba-1,1287 galaxyEnaQ0Ba-1-1,1287 galaxyEnaQ0Ba-1-1-11,1287 galaxyEnaQ0Ba-1-17,1287 galaxyEnaQ0Ba-2,1287 galaxyEnaQ1Ay-4,1287 galaxyEnaQ1Ay-4-2,1287 galaxyEnaQ1Ay-4-2-2,1287 galaxyEnaQ1Ay-43,1287 galaxyEnaQ1Ba-1-17,1287 galaxyEnaQ2Ay-120,1287 galaxyEnaQ2Ay-122,1287 galaxyEnaQ2Ay-4,1287 galaxyEnaQ2Ay-5,1287 galaxyEnaQ2Ay-6,1287 galaxyEnaQ3Ay-4,1287 galaxyEnaQ3Ay-5,1287 galaxyEnaQ3Ay-9,1287 galaxyEnaQ3B-1-1-7,1287 galaxyEnaQ3B-1-617-2,1287 sarsCov2Phylo,1134 sarsCov2PhyloPub,1267 plot Calu3_07hpi,73 ORFs,71 Q0_tracks,904 Q1_tracks,906 Q2_tracks,906 Q3_tracks,906 Vero6_05hpi,73 Vero6_24hpi,73 galaxyEna,906 galaxyEnaQ0Ba-1,902 galaxyEnaQ0Ba-1-1,902 galaxyEnaQ0Ba-1-1-11,902 galaxyEnaQ0Ba-1-17,902 galaxyEnaQ0Ba-2,902 galaxyEnaQ1Ay-4,902 galaxyEnaQ1Ay-4-2,902 galaxyEnaQ1Ay-4-2-2,902 galaxyEnaQ1Ay-43,902 galaxyEnaQ1Ba-1-17,902 galaxyEnaQ2Ay-120,902 galaxyEnaQ2Ay-122,902 galaxyEnaQ2Ay-4,902 galaxyEnaQ2Ay-5,902 galaxyEnaQ2Ay-6,902 galaxyEnaQ3Ay-4,902 galaxyEnaQ3Ay-5,902 galaxyEnaQ3Ay-9,902 galaxyEnaQ3B-1-1-7,902 galaxyEnaQ3B-1-617-2,902 nextstrainGene,54 nextstrainSamples,69 nextstrainSamples,330 recomb,64 sarsCov2Phylo,335 sarsCov2PhyloPub,346 weizmanOrfs,79 plots Q0_tracks,217 Q1_tracks,219 Q2_tracks,219 Q3_tracks,219 galaxyEna,219 galaxyEnaQ0Ba-1,215 galaxyEnaQ0Ba-1-1,215 galaxyEnaQ0Ba-1-1-11,215 galaxyEnaQ0Ba-1-17,215 galaxyEnaQ0Ba-2,215 galaxyEnaQ1Ay-4,215 galaxyEnaQ1Ay-4-2,215 galaxyEnaQ1Ay-4-2-2,215 galaxyEnaQ1Ay-43,215 galaxyEnaQ1Ba-1-17,215 galaxyEnaQ2Ay-120,215 galaxyEnaQ2Ay-122,215 galaxyEnaQ2Ay-4,215 galaxyEnaQ2Ay-5,215 galaxyEnaQ2Ay-6,215 galaxyEnaQ3Ay-4,215 galaxyEnaQ3Ay-5,215 galaxyEnaQ3Ay-9,215 galaxyEnaQ3B-1-1-7,215 galaxyEnaQ3B-1-617-2,215 strainCons119way,228 strainCons119way,237 strainCons119way,327 strainCons44way,176 strainCons44way,185 strainCons44way,275 plotted strainCons119way,1856 strainCons44way,1451 plus variantMuts,135 pmc PhyloCSF_smooth,730 PhyloCSF_smooth,779 PhyloCSF_smooth,808 Starr_Bloom,284 Starr_Bloom_bind,278 abEscape,769 abEscape,859 abEscape,906 bloomEscMabAvg,773 bloomEscMabAvg,863 bloomEscMabAvg,910 bloomEscMax,779 bloomEscMax,869 bloomEscMax,916 bloomEscSerumAvg,774 bloomEscSerumAvg,864 bloomEscSerumAvg,911 bloomEscTop,777 bloomEscTop,867 bloomEscTop,914 escape,776 escape,866 escape,913 iedb,131 kimIvtCov,199 kimTranscripts,483 mccoy,769 mccoy,859 mccoy,906 multiz7way,1034 multiz7way,1077 multiz7way,1122 multiz7way,1164 multiz7way,1207 multiz7way,1274 nextstrainClade,275 nextstrainFreq,410 nextstrainFreq,431 nextstrainGene,224 nextstrainParsimony,477 nextstrainSamples,1030 nextstrainSamples,1051 nextstrainSamples,1083 pbmShanghai,538 pdb,164 pond,301 pyle,309 rapid,374 rappuoli,776 rappuoli,866 rappuoli,913 recomb,360 sarsCov2Phylo,1019 sarsCov2Phylo,1047 sarsCov2Phylo,1144 sarsCov2Phylo,1175 sarsCov2PhyloPub,1139 sarsCov2PhyloPub,1167 sarsCov2PhyloPub,1277 sarsCov2PhyloPub,1308 simpleRepeat,96 strainCons119way,2412 strainCons119way,2455 strainCons119way,2500 strainCons119way,2542 strainCons119way,2585 strainCons119way,2652 strainCons44way,2007 strainCons44way,2050 strainCons44way,2095 strainCons44way,2137 strainCons44way,2180 strainCons44way,2247 transcriptome,489 treangen,331 unipCov2AliSwissprot,464 unipCov2Chain,693 unipCov2DisulfBond,689 unipCov2Domain,688 unipCov2Interest,347 unipCov2LocCytopl,688 unipCov2LocExtra,688 unipCov2LocSignal,689 unipCov2LocTransMemb,689 unipCov2Modif,692 unipCov2Mut,689 unipCov2Other,689 unipCov2Repeat,687 unipCov2Struct,691 variantMuts,1464 pmc102472 pdb,165 pmc1182216 multiz7way,1078 strainCons119way,2456 strainCons44way,2051 pmc1206396 multiz7way,1123 strainCons119way,2501 strainCons44way,2096 pmc148217 simpleRepeat,97 pmc208784 multiz7way,1165 strainCons119way,2543 strainCons44way,2138 pmc2798823 multiz7way,1035 strainCons119way,2413 strainCons44way,2008 pmc2808938 iedb,132 pmc2835736 sarsCov2Phylo,1145 sarsCov2PhyloPub,1278 pmc3117341 PhyloCSF_smooth,731 pmc3245120 unipCov2AliSwissprot,465 unipCov2Chain,694 unipCov2DisulfBond,690 unipCov2Domain,689 unipCov2Interest,348 unipCov2LocCytopl,689 unipCov2LocExtra,689 unipCov2LocSignal,690 unipCov2LocTransMemb,690 unipCov2Modif,693 unipCov2Mut,690 unipCov2Other,690 unipCov2Repeat,688 unipCov2Struct,692 pmc3603318 sarsCov2Phylo,1048 sarsCov2PhyloPub,1168 pmc383317 multiz7way,1208 strainCons119way,2586 strainCons44way,2181 pmc4271533 nextstrainSamples,1084 pmc430961 multiz7way,1275 strainCons119way,2653 strainCons44way,2248 pmc5758920 nextstrainFreq,432 nextstrainSamples,1052 pmc5998883 sarsCov2Phylo,1176 sarsCov2PhyloPub,1309 pmc6137996 variantMuts,1465 pmc6247931 nextstrainClade,276 nextstrainFreq,411 nextstrainGene,225 nextstrainParsimony,478 nextstrainSamples,1031 pmc6886504 PhyloCSF_smooth,780 pmc7179501 kimIvtCov,200 kimTranscripts,484 transcriptome,490 pmc7302193 PhyloCSF_smooth,809 pmc7337385 treangen,332 pmc7359520 pyle,310 pmc7418704 Starr_Bloom,285 Starr_Bloom_bind,279 pmc7427299 sarsCov2Phylo,1020 sarsCov2PhyloPub,1140 pmc7454405 rapid,375 pmc7475724 pbmShanghai,539 pmc7676316 abEscape,770 bloomEscMabAvg,774 bloomEscMax,780 bloomEscSerumAvg,775 bloomEscTop,778 escape,777 mccoy,770 rappuoli,777 pmc7724661 abEscape,860 bloomEscMabAvg,864 bloomEscMax,870 bloomEscSerumAvg,865 bloomEscTop,868 escape,867 mccoy,860 rappuoli,867 pmc7781313 abEscape,907 bloomEscMabAvg,911 bloomEscMax,917 bloomEscSerumAvg,912 bloomEscTop,915 escape,914 mccoy,907 rappuoli,914 pmc9037384 pond,302 pmc9519458 recomb,361 pmid Calu3_07hpi,377 ORFs,375 PhyloCSF_smooth,728 PhyloCSF_smooth,777 PhyloCSF_smooth,806 Starr_Bloom,282 Starr_Bloom_bind,276 Vero6_05hpi,377 Vero6_24hpi,377 abEscape,767 abEscape,857 abEscape,904 augustusGene,314 augustusGene,339 bloomEscMabAvg,771 bloomEscMabAvg,861 bloomEscMabAvg,908 bloomEscMax,777 bloomEscMax,867 bloomEscMax,914 bloomEscSerumAvg,772 bloomEscSerumAvg,862 bloomEscSerumAvg,909 bloomEscTop,775 bloomEscTop,865 bloomEscTop,912 cd8escape,230 cpgIslandExt,622 cpgIslandExtUnmasked,625 cpgIslandSuper,622 escape,774 escape,864 escape,911 genscan,229 iedb,129 kimIvtCov,197 kimTranscripts,481 mccoy,767 mccoy,857 mccoy,904 multiz7way,972 multiz7way,1007 multiz7way,1032 multiz7way,1075 multiz7way,1120 multiz7way,1162 multiz7way,1205 multiz7way,1228 multiz7way,1272 nextstrainClade,273 nextstrainFreq,408 nextstrainFreq,429 nextstrainGene,222 nextstrainParsimony,475 nextstrainSamples,1028 nextstrainSamples,1049 nextstrainSamples,1081 pbmShanghai,536 pdb,162 pond,299 pyle,307 rapid,372 rappuoli,774 rappuoli,864 rappuoli,911 recomb,358 sarsCov2Phylo,970 sarsCov2Phylo,1017 sarsCov2Phylo,1045 sarsCov2Phylo,1142 sarsCov2Phylo,1173 sarsCov2PhyloPub,1090 sarsCov2PhyloPub,1137 sarsCov2PhyloPub,1165 sarsCov2PhyloPub,1275 sarsCov2PhyloPub,1306 simpleRepeat,94 strainCons119way,2350 strainCons119way,2385 strainCons119way,2410 strainCons119way,2453 strainCons119way,2498 strainCons119way,2540 strainCons119way,2583 strainCons119way,2606 strainCons119way,2650 strainCons44way,1945 strainCons44way,1980 strainCons44way,2005 strainCons44way,2048 strainCons44way,2093 strainCons44way,2135 strainCons44way,2178 strainCons44way,2201 strainCons44way,2245 transcriptome,487 treangen,329 unipCov2AliSwissprot,462 unipCov2AliSwissprot,506 unipCov2Chain,691 unipCov2Chain,735 unipCov2DisulfBond,687 unipCov2DisulfBond,731 unipCov2Domain,686 unipCov2Domain,730 unipCov2Interest,345 unipCov2Interest,389 unipCov2LocCytopl,686 unipCov2LocCytopl,730 unipCov2LocExtra,686 unipCov2LocExtra,730 unipCov2LocSignal,687 unipCov2LocSignal,731 unipCov2LocTransMemb,687 unipCov2LocTransMemb,731 unipCov2Modif,690 unipCov2Modif,734 unipCov2Mut,687 unipCov2Mut,731 unipCov2Other,687 unipCov2Other,731 unipCov2Repeat,685 unipCov2Repeat,729 unipCov2Struct,689 unipCov2Struct,733 vaccines,592 variantMuts,1277 variantMuts,1462 weizmanOrfs,383 windowmaskerSdust,113 pnas potPathoIndel,13 pnas.2008176117 potPathoIndel,244 point Calu3_07hpi,118 ORFs,116 Starr_Bloom,59 Starr_Bloom_bind,56 Vero6_05hpi,118 Vero6_24hpi,118 weizmanOrfs,124 pointing crisprDet,157 points Calu3_07hpi,243 ORFs,241 Vero6_05hpi,243 Vero6_24hpi,243 sarsCov2Phylo,115 sarsCov2PhyloPub,128 weizmanOrfs,249 policy nextstrainFreq,270 nextstrainSamples,922 sarsCov2Phylo,872 sarsCov2PhyloPub,978 pollard multiz7way,1009 strainCons119way,2387 strainCons44way,1982 poly-a augustusGene,62 poly-t cas13Crispr,72 polya vaccines,255 polyclonal abEscape,717 bloomEscMabAvg,721 bloomEscMax,727 bloomEscSerumAvg,722 bloomEscTop,725 escape,724 mccoy,717 rappuoli,724 polymorphic simpleRepeat,46 polymorphism multiz7way,180 multiz7way,202 multiz7way,224 strainCons119way,529 strainCons119way,551 strainCons119way,573 strainCons44way,477 strainCons44way,499 strainCons44way,521 polymorphisms multiz7way,111 strainCons119way,460 strainCons44way,408 polypeptide gordon2,217 unipCov2Chain,6 unipCov2Chain,172 unipCov2Chain,174 unipCov2DisulfBond,168 unipCov2DisulfBond,170 unipCov2Domain,167 unipCov2Domain,169 unipCov2LocCytopl,167 unipCov2LocCytopl,169 unipCov2LocExtra,167 unipCov2LocExtra,169 unipCov2LocSignal,168 unipCov2LocSignal,170 unipCov2LocTransMemb,168 unipCov2LocTransMemb,170 unipCov2Modif,171 unipCov2Modif,173 unipCov2Mut,168 unipCov2Mut,170 unipCov2Other,168 unipCov2Other,170 unipCov2Repeat,166 unipCov2Repeat,168 unipCov2Struct,170 unipCov2Struct,172 pond Negative_Selection,12 Positive_Selection,12 Q0_tracks,1259 Q0_tracks,1333 Q1_tracks,1261 Q1_tracks,1335 Q2_tracks,1261 Q2_tracks,1335 Q3_tracks,1261 Q3_tracks,1335 galaxyEna,1261 galaxyEna,1335 galaxyEnaQ0Ba-1,1257 galaxyEnaQ0Ba-1,1331 galaxyEnaQ0Ba-1-1,1257 galaxyEnaQ0Ba-1-1,1331 galaxyEnaQ0Ba-1-1-11,1257 galaxyEnaQ0Ba-1-1-11,1331 galaxyEnaQ0Ba-1-17,1257 galaxyEnaQ0Ba-1-17,1331 galaxyEnaQ0Ba-2,1257 galaxyEnaQ0Ba-2,1331 galaxyEnaQ1Ay-4,1257 galaxyEnaQ1Ay-4,1331 galaxyEnaQ1Ay-4-2,1257 galaxyEnaQ1Ay-4-2,1331 galaxyEnaQ1Ay-4-2-2,1257 galaxyEnaQ1Ay-4-2-2,1331 galaxyEnaQ1Ay-43,1257 galaxyEnaQ1Ay-43,1331 galaxyEnaQ1Ba-1-17,1257 galaxyEnaQ1Ba-1-17,1331 galaxyEnaQ2Ay-120,1257 galaxyEnaQ2Ay-120,1331 galaxyEnaQ2Ay-122,1257 galaxyEnaQ2Ay-122,1331 galaxyEnaQ2Ay-4,1257 galaxyEnaQ2Ay-4,1331 galaxyEnaQ2Ay-5,1257 galaxyEnaQ2Ay-5,1331 galaxyEnaQ2Ay-6,1257 galaxyEnaQ2Ay-6,1331 galaxyEnaQ3Ay-4,1257 galaxyEnaQ3Ay-4,1331 galaxyEnaQ3Ay-5,1257 galaxyEnaQ3Ay-5,1331 galaxyEnaQ3Ay-9,1257 galaxyEnaQ3Ay-9,1331 galaxyEnaQ3B-1-1-7,1257 galaxyEnaQ3B-1-1-7,1331 galaxyEnaQ3B-1-617-2,1257 galaxyEnaQ3B-1-617-2,1331 pond,3 pond,9 pond,23 pond,229 pond,239 pooh spikeMuts,140 pool artic,45 articV4,48 articV4_1,59 rapid,80 rapid,99 rapid,172 swift,56 pools rapid,107 targets,47 popa cd8escape,199 population epitopes,106 populationhla-a epitopes,114 populations poranHla1,32 poranHla2,32 poran poranHla1,1 poranHla1,260 poranHla2,1 poranHla2,260 poranhla poranHla1,232 poranHla2,232 port vaccines,268 position abEscape,394 abEscape,476 bloomEscMabAvg,398 bloomEscMabAvg,480 bloomEscMax,404 bloomEscMax,486 bloomEscSerumAvg,399 bloomEscSerumAvg,481 bloomEscTop,402 bloomEscTop,484 contacts,248 escape,401 escape,483 kimRnaMod,53 mccoy,394 mccoy,476 multiz7way,307 nextstrainSamples,118 nextstrainSamples,135 nextstrainSamples,164 nextstrainSamples,315 nextstrainSamples,396 pbmShanghai,308 pbmShanghai,325 pond,207 rappuoli,401 rappuoli,483 resistPred,138 sarsCov2Phylo,320 sarsCov2Phylo,400 sarsCov2PhyloPub,327 sarsCov2PhyloPub,379 sarsCov2PhyloPub,429 spikeMuts,238 spikeMuts,247 strainCons119way,650 strainCons44way,598 treangen,221 treangen,246 positions PhyloCSF_smooth,346 PhyloCSFpower,361 abEscape,377 bloomEscMabAvg,381 bloomEscMax,387 bloomEscSerumAvg,382 bloomEscTop,11 bloomEscTop,385 contacts,122 escape,384 mccoy,377 multiz7way,361 nextstrainSamples,253 pbmShanghai,333 problematicSites,253 rappuoli,384 resistPred,29 rnaStructRangan,50 strainCons119way,292 strainCons119way,295 strainCons119way,703 strainCons44way,240 strainCons44way,243 strainCons44way,651 unipCov2AliSwissprot,176 unipCov2Chain,429 unipCov2DisulfBond,425 unipCov2Domain,424 unipCov2Interest,105 unipCov2LocCytopl,424 unipCov2LocExtra,424 unipCov2LocSignal,425 unipCov2LocTransMemb,425 unipCov2Modif,428 unipCov2Mut,425 unipCov2Other,425 unipCov2Repeat,423 unipCov2Struct,427 positive IgG_Z-score-_COVID-19_patients,235 IgM_Z-score-_COVID-19_patients,235 PhyloCSF_smooth,332 PhyloCSFpower,347 Positive_Selection,1 Positive_Selection,5 Starr_Bloom,131 Starr_Bloom_bind,125 bpmIggCovidSum,244 bpmIgmCovidSum,244 iedb,42 pbm,244 pbmShanghai,383 pond,96 primers,198 primers,224 rapid,61 strainCons119way,335 strainCons44way,283 possible Q0_tracks,1143 Q0_tracks,1179 Q1_tracks,1145 Q1_tracks,1181 Q2_tracks,1145 Q2_tracks,1181 Q3_tracks,1145 Q3_tracks,1181 Starr_Bloom,58 Starr_Bloom_bind,55 abEscape,76 bloomEscMabAvg,80 bloomEscMax,86 bloomEscSerumAvg,81 bloomEscTop,84 cas13Crispr,47 cas13Crispr,196 escape,83 galaxyEna,1145 galaxyEna,1181 galaxyEnaQ0Ba-1,1141 galaxyEnaQ0Ba-1,1177 galaxyEnaQ0Ba-1-1,1141 galaxyEnaQ0Ba-1-1,1177 galaxyEnaQ0Ba-1-1-11,1141 galaxyEnaQ0Ba-1-1-11,1177 galaxyEnaQ0Ba-1-17,1141 galaxyEnaQ0Ba-1-17,1177 galaxyEnaQ0Ba-2,1141 galaxyEnaQ0Ba-2,1177 galaxyEnaQ1Ay-4,1141 galaxyEnaQ1Ay-4,1177 galaxyEnaQ1Ay-4-2,1141 galaxyEnaQ1Ay-4-2,1177 galaxyEnaQ1Ay-4-2-2,1141 galaxyEnaQ1Ay-4-2-2,1177 galaxyEnaQ1Ay-43,1141 galaxyEnaQ1Ay-43,1177 galaxyEnaQ1Ba-1-17,1141 galaxyEnaQ1Ba-1-17,1177 galaxyEnaQ2Ay-120,1141 galaxyEnaQ2Ay-120,1177 galaxyEnaQ2Ay-122,1141 galaxyEnaQ2Ay-122,1177 galaxyEnaQ2Ay-4,1141 galaxyEnaQ2Ay-4,1177 galaxyEnaQ2Ay-5,1141 galaxyEnaQ2Ay-5,1177 galaxyEnaQ2Ay-6,1141 galaxyEnaQ2Ay-6,1177 galaxyEnaQ3Ay-4,1141 galaxyEnaQ3Ay-4,1177 galaxyEnaQ3Ay-5,1141 galaxyEnaQ3Ay-5,1177 galaxyEnaQ3Ay-9,1141 galaxyEnaQ3Ay-9,1177 galaxyEnaQ3B-1-1-7,1141 galaxyEnaQ3B-1-1-7,1177 galaxyEnaQ3B-1-617-2,1141 galaxyEnaQ3B-1-617-2,1177 mccoy,76 nextstrainParsimony,409 nextstrainSamples,886 rappuoli,83 sarsCov2Phylo,822 sarsCov2PhyloPub,905 variantMuts,1168 possibly problematicSites,350 simpleRepeat,18 post-processing unipCov2Chain,180 unipCov2DisulfBond,176 unipCov2Domain,175 unipCov2LocCytopl,175 unipCov2LocExtra,175 unipCov2LocSignal,176 unipCov2LocTransMemb,176 unipCov2Modif,179 unipCov2Mut,176 unipCov2Other,176 unipCov2Repeat,174 unipCov2Struct,178 posterior strainCons119way,1862 strainCons44way,1457 postprocessing Q0_tracks,861 Q1_tracks,863 Q2_tracks,863 Q3_tracks,863 galaxyEna,863 galaxyEnaQ0Ba-1,859 galaxyEnaQ0Ba-1-1,859 galaxyEnaQ0Ba-1-1-11,859 galaxyEnaQ0Ba-1-17,859 galaxyEnaQ0Ba-2,859 galaxyEnaQ1Ay-4,859 galaxyEnaQ1Ay-4-2,859 galaxyEnaQ1Ay-4-2-2,859 galaxyEnaQ1Ay-43,859 galaxyEnaQ1Ba-1-17,859 galaxyEnaQ2Ay-120,859 galaxyEnaQ2Ay-122,859 galaxyEnaQ2Ay-4,859 galaxyEnaQ2Ay-5,859 galaxyEnaQ2Ay-6,859 galaxyEnaQ3Ay-4,859 galaxyEnaQ3Ay-5,859 galaxyEnaQ3Ay-9,859 galaxyEnaQ3B-1-1-7,859 galaxyEnaQ3B-1-617-2,859 pot potPathoIndel,1 potential PhyloCSF_smooth,11 PhyloCSF_smooth,585 PhyloCSFpower,26 PhyloCSFpower,600 cas13Crispr,60 contacts,4 contacts,21 cpgIslandExt,175 cpgIslandExtUnmasked,178 cpgIslandSuper,175 epitopes,142 epitopes,270 gordon2,34 gordon2,266 potPathoIndel,4 problematicSites,179 recomb,192 spikeMuts,42 potentially resistPred,41 potter nextstrainClade,250 nextstrainFreq,385 nextstrainGene,199 nextstrainParsimony,452 nextstrainSamples,1005 power PhyloCSF_smooth,178 PhyloCSF_smooth,181 PhyloCSF_smooth,226 PhyloCSF_smooth,251 PhyloCSFpower,2 PhyloCSFpower,14 PhyloCSFpower,193 PhyloCSFpower,196 PhyloCSFpower,241 PhyloCSFpower,266 powerful nextstrainClade,31 nextstrainFreq,31 nextstrainGene,29 nextstrainParsimony,48 nextstrainSamples,44 pp multiz7way,1100 strainCons119way,2478 strainCons44way,2073 pre-mrna genscan,185 pre-proof kimNp,124 kimRnaMod,249 precise Q0_tracks,516 Q0_tracks,570 Q1_tracks,518 Q1_tracks,572 Q2_tracks,518 Q2_tracks,572 Q3_tracks,518 Q3_tracks,572 galaxyEna,518 galaxyEna,572 galaxyEnaQ0Ba-1,514 galaxyEnaQ0Ba-1,568 galaxyEnaQ0Ba-1-1,514 galaxyEnaQ0Ba-1-1,568 galaxyEnaQ0Ba-1-1-11,514 galaxyEnaQ0Ba-1-1-11,568 galaxyEnaQ0Ba-1-17,514 galaxyEnaQ0Ba-1-17,568 galaxyEnaQ0Ba-2,514 galaxyEnaQ0Ba-2,568 galaxyEnaQ1Ay-4,514 galaxyEnaQ1Ay-4,568 galaxyEnaQ1Ay-4-2,514 galaxyEnaQ1Ay-4-2,568 galaxyEnaQ1Ay-4-2-2,514 galaxyEnaQ1Ay-4-2-2,568 galaxyEnaQ1Ay-43,514 galaxyEnaQ1Ay-43,568 galaxyEnaQ1Ba-1-17,514 galaxyEnaQ1Ba-1-17,568 galaxyEnaQ2Ay-120,514 galaxyEnaQ2Ay-120,568 galaxyEnaQ2Ay-122,514 galaxyEnaQ2Ay-122,568 galaxyEnaQ2Ay-4,514 galaxyEnaQ2Ay-4,568 galaxyEnaQ2Ay-5,514 galaxyEnaQ2Ay-5,568 galaxyEnaQ2Ay-6,514 galaxyEnaQ2Ay-6,568 galaxyEnaQ3Ay-4,514 galaxyEnaQ3Ay-4,568 galaxyEnaQ3Ay-5,514 galaxyEnaQ3Ay-5,568 galaxyEnaQ3Ay-9,514 galaxyEnaQ3Ay-9,568 galaxyEnaQ3B-1-1-7,514 galaxyEnaQ3B-1-1-7,568 galaxyEnaQ3B-1-617-2,514 galaxyEnaQ3B-1-617-2,568 precisely abEscape,355 bloomEscMabAvg,359 bloomEscMax,365 bloomEscSerumAvg,360 bloomEscTop,363 escape,362 mccoy,355 rappuoli,362 precision strainCons119way,1729 strainCons44way,1324 precompiled ncbiGeneBGP,99 ncbiProducts,115 unipCov2AliSwissprot,331 unipCov2Chain,561 unipCov2DisulfBond,557 unipCov2Domain,556 unipCov2Interest,237 unipCov2LocCytopl,556 unipCov2LocExtra,556 unipCov2LocSignal,557 unipCov2LocTransMemb,557 unipCov2Modif,560 unipCov2Mut,557 unipCov2Other,557 unipCov2Repeat,555 unipCov2Struct,559 vaccines,421 predict pyle,212 strainCons119way,1348 predicted Calu3_07hpi,44 Calu3_07hpi,57 Calu3_07hpi,62 ORFs,42 ORFs,55 ORFs,60 Vero6_05hpi,44 Vero6_05hpi,57 Vero6_05hpi,62 Vero6_24hpi,44 Vero6_24hpi,57 Vero6_24hpi,62 cas13Crispr,57 cas13Crispr,115 cpgIslandExt,228 cpgIslandExtUnmasked,231 cpgIslandSuper,228 crisprDet,96 kimTranscripts,22 kimTranscripts,95 kimTranscripts,106 poranHla1,49 poranHla2,49 resistPred,1 rosettaMhc,5 rosettaMhc,97 rosettaMhc,179 rosettaMhc,209 rosettaMhc,271 strainCons119way,329 strainCons119way,343 strainCons119way,2070 strainCons119way,2079 strainCons44way,277 strainCons44way,291 strainCons44way,1665 strainCons44way,1674 swift,83 transcriptome,14 transcriptome,87 transcriptome,98 weizmanOrfs,50 weizmanOrfs,63 weizmanOrfs,68 prediction Calu3_07hpi,206 Entropy,14 ORFs,204 Vero6_05hpi,206 Vero6_24hpi,206 augustusGene,321 crisprDet,130 epitopes,52 epitopes,57 epitopes,66 epitopes,88 genscan,73 genscan,211 poranHla1,274 poranHla2,274 rnaStructRangan,74 rosettaMhc,267 weizmanOrfs,212 predictions CHX_24hr_1,12 CHX_24hr_2,12 CHX_5hr_1,12 CHX_5hr_2,12 CHX_7hr_1,12 CHX_7hr_2,12 Calu3_07hpi,11 Calu3_07hpi,24 Calu3_07hpi,234 Calu3_07hpi,293 Harr_24hr_1,12 Harr_24hr_2,12 Harr_5hr_1,12 Harr_5hr_2,12 Harr_7hr_1,12 Harr_7hr_2,12 Kim_RNAs,17 Kim_TRS_sgmRNAs,20 Kim_non-TRS_sgmRNAs,20 LTM_24hr_1,12 LTM_24hr_2,12 LTM_5hr_1,12 LTM_5hr_2,12 LTM_7hr_1,12 LTM_7hr_2,12 ORFs,2 ORFs,5 ORFs,9 ORFs,22 ORFs,232 ORFs,291 PhyloCSFgenes,11 PhyloCSFrejected,13 TRS_sites,14 Vero6_05hpi,11 Vero6_05hpi,24 Vero6_05hpi,234 Vero6_05hpi,293 Vero6_24hpi,11 Vero6_24hpi,24 Vero6_24hpi,234 Vero6_24hpi,293 augustusGene,6 augustusGene,11 augustusGene,18 augustusGene,26 augustusGene,191 cas13Crispr,470 contacts,16 crisprDet,49 crisprDet,122 epitopes,2 epitopes,19 epitopes,83 epitopes,266 epitopes,343 genscan,5 genscan,9 genscan,14 genscan,24 genscan,112 genscan,118 gordon2,14 kimMgiNc5p,14 kimNp,17 kimNp5pBreak,11 kimNpLdr3pBreak,11 kimNpNc3pBrk,11 kimRnaMod,25 kimTranscripts,17 mRNA-seq_24hr_1,12 mRNA-seq_24hr_2,12 mRNA-seq_5hr_1,12 mRNA-seq_5hr_2,12 mRNA-seq_7hr_1,12 mRNA-seq_7hr_2,12 mRNAs,15 ncbiGeneBGP,10 ncbiProducts,12 nextstrainGene,11 pdb,12 phyloGenes,11 pyle,196 rnaStructRangan,7 rnaStructRangan,20 rosettaMhc,316 transcriptome,9 weizmanOrfs,17 weizmanOrfs,30 weizmanOrfs,240 weizmanOrfs,299 predictor poranHla1,288 poranHla2,288 prefix crisprDet,52 primers,69 primers,126 preliminary variantMuts,1301 prepared Calu3_07hpi,120 Calu3_07hpi,169 ORFs,118 ORFs,167 Vero6_05hpi,120 Vero6_05hpi,169 Vero6_24hpi,120 Vero6_24hpi,169 gc5BaseBw,80 pbmShanghai,100 primers,378 rfam,150 ucscToINSDC,49 ucscToRefSeq,43 vaccines,640 weizmanOrfs,126 weizmanOrfs,175 preparing kimNp,111 kimRnaMod,236 kimTranscripts,456 transcriptome,462 preprint crisprDet,87 crisprDet,113 pyle,238 variantMuts,1394 variantMuts,1411 variantMuts,1431 preprints addgene,50 presence targets,21 targets,81 targets,234 present PhyloCSF_smooth,201 PhyloCSFpower,216 cpgIslandExt,154 cpgIslandExtUnmasked,157 cpgIslandSuper,154 multiz7way,498 phyloGenes,297 spikeMuts,230 strainCons119way,848 strainCons44way,796 variantMuts,876 variantMuts,922 presentation cd8escape,75 gc5BaseBw,75 vaccines,635 presented cd8escape,33 nextstrainFreq,273 nextstrainSamples,925 sarsCov2Phylo,875 sarsCov2PhyloPub,981 presenting spikeMuts,167 presents sarsCov2Phylo,153 sarsCov2PhyloPub,159 spikeMuts,92 pressure cpgIslandExt,123 cpgIslandExtUnmasked,126 cpgIslandSuper,123 presumably nextstrainParsimony,158 prevent Calu3_07hpi,155 ORFs,153 Vero6_05hpi,155 Vero6_24hpi,155 cas13Crispr,76 weizmanOrfs,161 preventive spikeMuts,365 spikeMuts,401 previous potPathoIndel,33 problematicSites,207 strainCons119way,169 strainCons44way,117 previously Calu3_07hpi,21 ORFs,19 Vero6_05hpi,21 Vero6_24hpi,21 variantMuts,169 variantMuts,1067 weizmanOrfs,27 prey gordon2,208 price Calu3_07hpi,214 ORFs,212 Vero6_05hpi,214 Vero6_24hpi,214 sarsCov2Phylo,644 sarsCov2Phylo,1121 sarsCov2PhyloPub,668 sarsCov2PhyloPub,1254 weizmanOrfs,220 primal rapid,126 primary unipCov2Chain,219 unipCov2DisulfBond,215 unipCov2Domain,214 unipCov2LocCytopl,214 unipCov2LocExtra,214 unipCov2LocSignal,215 unipCov2LocTransMemb,215 unipCov2Modif,218 unipCov2Mut,215 unipCov2Other,215 unipCov2Repeat,213 unipCov2Struct,4 unipCov2Struct,217 primer Q0_tracks,119 Q0_tracks,133 Q0_tracks,147 Q0_tracks,152 Q0_tracks,863 Q1_tracks,121 Q1_tracks,135 Q1_tracks,149 Q1_tracks,154 Q1_tracks,865 Q2_tracks,121 Q2_tracks,135 Q2_tracks,149 Q2_tracks,154 Q2_tracks,865 Q3_tracks,121 Q3_tracks,135 Q3_tracks,149 Q3_tracks,154 Q3_tracks,865 artic,44 artic,49 articV4,47 articV4,52 articV4_1,58 articV4_1,63 galaxyEna,121 galaxyEna,135 galaxyEna,149 galaxyEna,154 galaxyEna,865 galaxyEnaQ0Ba-1,117 galaxyEnaQ0Ba-1,131 galaxyEnaQ0Ba-1,145 galaxyEnaQ0Ba-1,150 galaxyEnaQ0Ba-1,861 galaxyEnaQ0Ba-1-1,117 galaxyEnaQ0Ba-1-1,131 galaxyEnaQ0Ba-1-1,145 galaxyEnaQ0Ba-1-1,150 galaxyEnaQ0Ba-1-1,861 galaxyEnaQ0Ba-1-1-11,117 galaxyEnaQ0Ba-1-1-11,131 galaxyEnaQ0Ba-1-1-11,145 galaxyEnaQ0Ba-1-1-11,150 galaxyEnaQ0Ba-1-1-11,861 galaxyEnaQ0Ba-1-17,117 galaxyEnaQ0Ba-1-17,131 galaxyEnaQ0Ba-1-17,145 galaxyEnaQ0Ba-1-17,150 galaxyEnaQ0Ba-1-17,861 galaxyEnaQ0Ba-2,117 galaxyEnaQ0Ba-2,131 galaxyEnaQ0Ba-2,145 galaxyEnaQ0Ba-2,150 galaxyEnaQ0Ba-2,861 galaxyEnaQ1Ay-4,117 galaxyEnaQ1Ay-4,131 galaxyEnaQ1Ay-4,145 galaxyEnaQ1Ay-4,150 galaxyEnaQ1Ay-4,861 galaxyEnaQ1Ay-4-2,117 galaxyEnaQ1Ay-4-2,131 galaxyEnaQ1Ay-4-2,145 galaxyEnaQ1Ay-4-2,150 galaxyEnaQ1Ay-4-2,861 galaxyEnaQ1Ay-4-2-2,117 galaxyEnaQ1Ay-4-2-2,131 galaxyEnaQ1Ay-4-2-2,145 galaxyEnaQ1Ay-4-2-2,150 galaxyEnaQ1Ay-4-2-2,861 galaxyEnaQ1Ay-43,117 galaxyEnaQ1Ay-43,131 galaxyEnaQ1Ay-43,145 galaxyEnaQ1Ay-43,150 galaxyEnaQ1Ay-43,861 galaxyEnaQ1Ba-1-17,117 galaxyEnaQ1Ba-1-17,131 galaxyEnaQ1Ba-1-17,145 galaxyEnaQ1Ba-1-17,150 galaxyEnaQ1Ba-1-17,861 galaxyEnaQ2Ay-120,117 galaxyEnaQ2Ay-120,131 galaxyEnaQ2Ay-120,145 galaxyEnaQ2Ay-120,150 galaxyEnaQ2Ay-120,861 galaxyEnaQ2Ay-122,117 galaxyEnaQ2Ay-122,131 galaxyEnaQ2Ay-122,145 galaxyEnaQ2Ay-122,150 galaxyEnaQ2Ay-122,861 galaxyEnaQ2Ay-4,117 galaxyEnaQ2Ay-4,131 galaxyEnaQ2Ay-4,145 galaxyEnaQ2Ay-4,150 galaxyEnaQ2Ay-4,861 galaxyEnaQ2Ay-5,117 galaxyEnaQ2Ay-5,131 galaxyEnaQ2Ay-5,145 galaxyEnaQ2Ay-5,150 galaxyEnaQ2Ay-5,861 galaxyEnaQ2Ay-6,117 galaxyEnaQ2Ay-6,131 galaxyEnaQ2Ay-6,145 galaxyEnaQ2Ay-6,150 galaxyEnaQ2Ay-6,861 galaxyEnaQ3Ay-4,117 galaxyEnaQ3Ay-4,131 galaxyEnaQ3Ay-4,145 galaxyEnaQ3Ay-4,150 galaxyEnaQ3Ay-4,861 galaxyEnaQ3Ay-5,117 galaxyEnaQ3Ay-5,131 galaxyEnaQ3Ay-5,145 galaxyEnaQ3Ay-5,150 galaxyEnaQ3Ay-5,861 galaxyEnaQ3Ay-9,117 galaxyEnaQ3Ay-9,131 galaxyEnaQ3Ay-9,145 galaxyEnaQ3Ay-9,150 galaxyEnaQ3Ay-9,861 galaxyEnaQ3B-1-1-7,117 galaxyEnaQ3B-1-1-7,131 galaxyEnaQ3B-1-1-7,145 galaxyEnaQ3B-1-1-7,150 galaxyEnaQ3B-1-1-7,861 galaxyEnaQ3B-1-617-2,117 galaxyEnaQ3B-1-617-2,131 galaxyEnaQ3B-1-617-2,145 galaxyEnaQ3B-1-617-2,150 galaxyEnaQ3B-1-617-2,861 primers,6 primers,63 primers,181 primers,229 rapid,135 rapid,153 rapid,171 rapid,190 swift,43 swift,59 swift,108 swift,126 varskip,39 varskip,57 primer-probe primers,253 primers artic,2 artic,9 artic,18 artic,35 articV4,2 articV4,9 articV4,18 articV4,38 articV4_1,2 articV4_1,9 articV4_1,18 articV4_1,37 articV4_1,49 crisprDet,21 kimIvtCov,104 kimIvtCov,109 primers,2 primers,19 primers,29 primers,55 primers,66 primers,95 primers,114 primers,212 primers,238 primers,282 primers,325 rapid,3 rapid,11 rapid,20 rapid,34 rapid,72 rapid,91 rapid,121 rapid,162 recomb,282 swift,2 swift,6 swift,15 swift,61 swift,99 varskip,3 varskip,9 varskip,18 varskip,27 varskip,35 primers.fa primers,291 primers.psl primers,313 principle abEscape,307 bloomEscMabAvg,311 bloomEscMax,317 bloomEscSerumAvg,312 bloomEscTop,315 escape,314 mccoy,307 rappuoli,314 print vaccines,312 printf cpgIslandExt,435 cpgIslandExtUnmasked,438 cpgIslandSuper,435 prior Q0_tracks,321 Q1_tracks,323 Q2_tracks,323 Q3_tracks,323 galaxyEna,323 galaxyEnaQ0Ba-1,319 galaxyEnaQ0Ba-1-1,319 galaxyEnaQ0Ba-1-1-11,319 galaxyEnaQ0Ba-1-17,319 galaxyEnaQ0Ba-2,319 galaxyEnaQ1Ay-4,319 galaxyEnaQ1Ay-4-2,319 galaxyEnaQ1Ay-4-2-2,319 galaxyEnaQ1Ay-43,319 galaxyEnaQ1Ba-1-17,319 galaxyEnaQ2Ay-120,319 galaxyEnaQ2Ay-122,319 galaxyEnaQ2Ay-4,319 galaxyEnaQ2Ay-5,319 galaxyEnaQ2Ay-6,319 galaxyEnaQ3Ay-4,319 galaxyEnaQ3Ay-5,319 galaxyEnaQ3Ay-9,319 galaxyEnaQ3B-1-1-7,319 galaxyEnaQ3B-1-617-2,319 priori epitopes,269 private strainCons44way,2263 probabilistic strainCons119way,1799 strainCons44way,1394 probabilities PhyloCSF_smooth,465 PhyloCSF_smooth,501 PhyloCSF_smooth,505 PhyloCSF_smooth,526 PhyloCSFpower,480 PhyloCSFpower,516 PhyloCSFpower,520 PhyloCSFpower,541 pyle,162 strainCons119way,377 strainCons44way,325 probability PhyloCSF_smooth,551 PhyloCSFpower,566 epitopes,291 strainCons119way,181 strainCons119way,1863 strainCons119way,2111 strainCons119way,2119 strainCons44way,129 strainCons44way,1458 strainCons44way,1706 strainCons44way,1714 probable problematicSites,55 probably pond,127 probe IgG_Z-score-_COVID-19_patients,130 IgM_Z-score-_COVID-19_patients,130 bpmIggCovidSum,139 bpmIgmCovidSum,139 pbm,139 primers,84 primers,182 problem problematicSites,180 problematic problematicSites,1 problematicSites,3 problematicSites,81 problematicSites,98 problematicSitesCaution,2 problematicSitesMask,2 sarsCov2Phylo,617 sarsCov2PhyloPub,644 problematic_sites_sarscov2.vcf problematicSites,497 problematicsites problematicSites,507 problematicsites_sars-cov2 problematicSites,115 problematicSites,454 problematicSites,495 sarsCov2Phylo,620 sarsCov2PhyloPub,647 problems problematicSites,131 proc multiz7way,1149 strainCons119way,2527 strainCons44way,2122 procedure Calu3_07hpi,290 ORFs,288 Vero6_05hpi,290 Vero6_24hpi,290 weizmanOrfs,296 procedures gap,22 gold,24 proceedings potPathoIndel,230 process multiz7way,1106 nextstrainSamples,798 strainCons119way,1805 strainCons119way,1819 strainCons119way,1899 strainCons119way,2484 strainCons44way,1400 strainCons44way,1414 strainCons44way,1494 strainCons44way,2079 processed Q0_tracks,836 Q1_tracks,838 Q2_tracks,838 Q3_tracks,838 galaxyEna,838 galaxyEnaQ0Ba-1,834 galaxyEnaQ0Ba-1-1,834 galaxyEnaQ0Ba-1-1-11,834 galaxyEnaQ0Ba-1-17,834 galaxyEnaQ0Ba-2,834 galaxyEnaQ1Ay-4,834 galaxyEnaQ1Ay-4-2,834 galaxyEnaQ1Ay-4-2-2,834 galaxyEnaQ1Ay-43,834 galaxyEnaQ1Ba-1-17,834 galaxyEnaQ2Ay-120,834 galaxyEnaQ2Ay-122,834 galaxyEnaQ2Ay-4,834 galaxyEnaQ2Ay-5,834 galaxyEnaQ2Ay-6,834 galaxyEnaQ3Ay-4,834 galaxyEnaQ3Ay-5,834 galaxyEnaQ3Ay-9,834 galaxyEnaQ3B-1-1-7,834 galaxyEnaQ3B-1-617-2,834 kimIvtCov,169 nextstrainClade,156 nextstrainFreq,148 nextstrainGene,63 nextstrainGene,106 nextstrainParsimony,305 nextstrainSamples,86 nextstrainSamples,636 rosettaMhc,375 processing galaxyEna,11 produce Q0_tracks,932 Q1_tracks,934 Q2_tracks,934 Q3_tracks,934 galaxyEna,934 galaxyEnaQ0Ba-1,930 galaxyEnaQ0Ba-1-1,930 galaxyEnaQ0Ba-1-1-11,930 galaxyEnaQ0Ba-1-17,930 galaxyEnaQ0Ba-2,930 galaxyEnaQ1Ay-4,930 galaxyEnaQ1Ay-4-2,930 galaxyEnaQ1Ay-4-2-2,930 galaxyEnaQ1Ay-43,930 galaxyEnaQ1Ba-1-17,930 galaxyEnaQ2Ay-120,930 galaxyEnaQ2Ay-122,930 galaxyEnaQ2Ay-4,930 galaxyEnaQ2Ay-5,930 galaxyEnaQ2Ay-6,930 galaxyEnaQ3Ay-4,930 galaxyEnaQ3Ay-5,930 galaxyEnaQ3Ay-9,930 galaxyEnaQ3B-1-1-7,930 galaxyEnaQ3B-1-617-2,930 gordon2,248 multiz7way,690 strainCons119way,1039 strainCons119way,2009 strainCons44way,987 strainCons44way,1604 produced cas13Crispr,475 rfam,93 strainCons119way,2061 strainCons44way,1656 producing crisprDet,148 nextstrainSamples,641 products gordon2,216 kimTranscripts,139 kimTranscripts,158 kimTranscripts,201 ncbiProducts,8 resistPred,49 swift,86 unipCov2Chain,2 unipCov2Chain,5 profile Calu3_07hpi,276 ORFs,274 Vero6_05hpi,276 Vero6_24hpi,276 pyle,157 weizmanOrfs,282 profiling Calu3_07hpi,95 Calu3_07hpi,224 ORFs,93 ORFs,222 Vero6_05hpi,95 Vero6_05hpi,224 Vero6_24hpi,95 Vero6_24hpi,224 weizmanOrfs,101 weizmanOrfs,230 program augustusGene,21 augustusGene,257 cpgIslandExt,559 cpgIslandExt,569 cpgIslandExt,594 cpgIslandExtUnmasked,562 cpgIslandExtUnmasked,572 cpgIslandExtUnmasked,597 cpgIslandSuper,559 cpgIslandSuper,569 cpgIslandSuper,594 genscan,18 genscan,137 genscan,178 nextstrainSamples,754 nextstrainSamples,821 rfam,48 simpleRepeat,62 simpleRepeat,80 strainCons119way,1719 strainCons119way,1788 strainCons119way,1983 strainCons44way,1314 strainCons44way,1383 strainCons44way,1578 unipCov2AliSwissprot,205 unipCov2Chain,458 unipCov2DisulfBond,454 unipCov2Domain,453 unipCov2Interest,134 unipCov2LocCytopl,453 unipCov2LocExtra,453 unipCov2LocSignal,454 unipCov2LocTransMemb,454 unipCov2Modif,457 unipCov2Mut,454 unipCov2Other,454 unipCov2Repeat,452 unipCov2Struct,456 programming multiz7way,647 strainCons119way,996 strainCons44way,944 programs multiz7way,821 multiz7way,854 strainCons119way,1930 strainCons119way,2199 strainCons119way,2232 strainCons44way,1525 strainCons44way,1794 strainCons44way,1827 progressively multiz7way,735 strainCons119way,1495 strainCons44way,1165 prohibit nextstrainSamples,682 sarsCov2PhyloPub,732 project Q0_tracks,33 Q0_tracks,260 Q0_tracks,1140 Q0_tracks,1175 Q0_tracks,1227 Q1_tracks,35 Q1_tracks,262 Q1_tracks,1142 Q1_tracks,1177 Q1_tracks,1229 Q2_tracks,35 Q2_tracks,262 Q2_tracks,1142 Q2_tracks,1177 Q2_tracks,1229 Q3_tracks,35 Q3_tracks,262 Q3_tracks,1142 Q3_tracks,1177 Q3_tracks,1229 galaxyEna,35 galaxyEna,262 galaxyEna,1142 galaxyEna,1177 galaxyEna,1229 galaxyEnaQ0Ba-1,31 galaxyEnaQ0Ba-1,258 galaxyEnaQ0Ba-1,1138 galaxyEnaQ0Ba-1,1173 galaxyEnaQ0Ba-1,1225 galaxyEnaQ0Ba-1-1,31 galaxyEnaQ0Ba-1-1,258 galaxyEnaQ0Ba-1-1,1138 galaxyEnaQ0Ba-1-1,1173 galaxyEnaQ0Ba-1-1,1225 galaxyEnaQ0Ba-1-1-11,31 galaxyEnaQ0Ba-1-1-11,258 galaxyEnaQ0Ba-1-1-11,1138 galaxyEnaQ0Ba-1-1-11,1173 galaxyEnaQ0Ba-1-1-11,1225 galaxyEnaQ0Ba-1-17,31 galaxyEnaQ0Ba-1-17,258 galaxyEnaQ0Ba-1-17,1138 galaxyEnaQ0Ba-1-17,1173 galaxyEnaQ0Ba-1-17,1225 galaxyEnaQ0Ba-2,31 galaxyEnaQ0Ba-2,258 galaxyEnaQ0Ba-2,1138 galaxyEnaQ0Ba-2,1173 galaxyEnaQ0Ba-2,1225 galaxyEnaQ1Ay-4,31 galaxyEnaQ1Ay-4,258 galaxyEnaQ1Ay-4,1138 galaxyEnaQ1Ay-4,1173 galaxyEnaQ1Ay-4,1225 galaxyEnaQ1Ay-4-2,31 galaxyEnaQ1Ay-4-2,258 galaxyEnaQ1Ay-4-2,1138 galaxyEnaQ1Ay-4-2,1173 galaxyEnaQ1Ay-4-2,1225 galaxyEnaQ1Ay-4-2-2,31 galaxyEnaQ1Ay-4-2-2,258 galaxyEnaQ1Ay-4-2-2,1138 galaxyEnaQ1Ay-4-2-2,1173 galaxyEnaQ1Ay-4-2-2,1225 galaxyEnaQ1Ay-43,31 galaxyEnaQ1Ay-43,258 galaxyEnaQ1Ay-43,1138 galaxyEnaQ1Ay-43,1173 galaxyEnaQ1Ay-43,1225 galaxyEnaQ1Ba-1-17,31 galaxyEnaQ1Ba-1-17,258 galaxyEnaQ1Ba-1-17,1138 galaxyEnaQ1Ba-1-17,1173 galaxyEnaQ1Ba-1-17,1225 galaxyEnaQ2Ay-120,31 galaxyEnaQ2Ay-120,258 galaxyEnaQ2Ay-120,1138 galaxyEnaQ2Ay-120,1173 galaxyEnaQ2Ay-120,1225 galaxyEnaQ2Ay-122,31 galaxyEnaQ2Ay-122,258 galaxyEnaQ2Ay-122,1138 galaxyEnaQ2Ay-122,1173 galaxyEnaQ2Ay-122,1225 galaxyEnaQ2Ay-4,31 galaxyEnaQ2Ay-4,258 galaxyEnaQ2Ay-4,1138 galaxyEnaQ2Ay-4,1173 galaxyEnaQ2Ay-4,1225 galaxyEnaQ2Ay-5,31 galaxyEnaQ2Ay-5,258 galaxyEnaQ2Ay-5,1138 galaxyEnaQ2Ay-5,1173 galaxyEnaQ2Ay-5,1225 galaxyEnaQ2Ay-6,31 galaxyEnaQ2Ay-6,258 galaxyEnaQ2Ay-6,1138 galaxyEnaQ2Ay-6,1173 galaxyEnaQ2Ay-6,1225 galaxyEnaQ3Ay-4,31 galaxyEnaQ3Ay-4,258 galaxyEnaQ3Ay-4,1138 galaxyEnaQ3Ay-4,1173 galaxyEnaQ3Ay-4,1225 galaxyEnaQ3Ay-5,31 galaxyEnaQ3Ay-5,258 galaxyEnaQ3Ay-5,1138 galaxyEnaQ3Ay-5,1173 galaxyEnaQ3Ay-5,1225 galaxyEnaQ3Ay-9,31 galaxyEnaQ3Ay-9,258 galaxyEnaQ3Ay-9,1138 galaxyEnaQ3Ay-9,1173 galaxyEnaQ3Ay-9,1225 galaxyEnaQ3B-1-1-7,31 galaxyEnaQ3B-1-1-7,258 galaxyEnaQ3B-1-1-7,1138 galaxyEnaQ3B-1-1-7,1173 galaxyEnaQ3B-1-1-7,1225 galaxyEnaQ3B-1-617-2,31 galaxyEnaQ3B-1-617-2,258 galaxyEnaQ3B-1-617-2,1138 galaxyEnaQ3B-1-617-2,1173 galaxyEnaQ3B-1-617-2,1225 primers,38 primers,391 resistPred,76 rfam,163 projects Q0_tracks,66 Q1_tracks,68 Q2_tracks,68 Q3_tracks,68 galaxyEna,68 galaxyEnaQ0Ba-1,64 galaxyEnaQ0Ba-1-1,64 galaxyEnaQ0Ba-1-1-11,64 galaxyEnaQ0Ba-1-17,64 galaxyEnaQ0Ba-2,64 galaxyEnaQ1Ay-4,64 galaxyEnaQ1Ay-4-2,64 galaxyEnaQ1Ay-4-2-2,64 galaxyEnaQ1Ay-43,64 galaxyEnaQ1Ba-1-17,64 galaxyEnaQ2Ay-120,64 galaxyEnaQ2Ay-122,64 galaxyEnaQ2Ay-4,64 galaxyEnaQ2Ay-5,64 galaxyEnaQ2Ay-6,64 galaxyEnaQ3Ay-4,64 galaxyEnaQ3Ay-5,64 galaxyEnaQ3Ay-9,64 galaxyEnaQ3B-1-1-7,64 galaxyEnaQ3B-1-617-2,64 promoter cpgIslandExt,40 cpgIslandExtUnmasked,43 cpgIslandSuper,40 proofreading cpgIslandExt,93 cpgIslandExtUnmasked,96 cpgIslandSuper,93 properties nextstrainClade,83 poranHla1,23 poranHla2,23 prophylactic cas13Crispr,513 proportion problematicSites,241 proposal sarsCov2Phylo,955 sarsCov2PhyloPub,1075 variantMuts,1262 proposed phyloGenes,158 prospective abEscape,841 bloomEscMabAvg,845 bloomEscMax,851 bloomEscSerumAvg,846 bloomEscTop,849 escape,848 mccoy,841 rappuoli,848 protein PhyloCSF_smooth,716 Starr_Bloom,65 Starr_Bloom_bind,62 abEscape,49 abEscape,376 abEscape,509 abEscape,538 bloomEscMabAvg,53 bloomEscMabAvg,380 bloomEscMabAvg,513 bloomEscMabAvg,542 bloomEscMax,59 bloomEscMax,386 bloomEscMax,519 bloomEscMax,548 bloomEscSerumAvg,54 bloomEscSerumAvg,381 bloomEscSerumAvg,514 bloomEscSerumAvg,543 bloomEscTop,57 bloomEscTop,384 bloomEscTop,517 bloomEscTop,546 contacts,96 contacts,272 escape,56 escape,383 escape,516 escape,545 gordon2,1 gordon2,94 gordon2,192 gordon2,215 igg,4 iggAllSum,6 igm,4 igmAllSum,6 mccoy,49 mccoy,376 mccoy,509 mccoy,538 multiz7way,526 multiz7way,551 nextstrainParsimony,28 nextstrainSamples,25 nextstrainSamples,137 nextstrainSamples,141 pbmShanghai,6 pbmShanghai,42 pbmShanghai,521 pdb,3 pdb,22 pdb,26 pdb,32 pdb,92 pdb,150 phyloGenes,206 poranHla1,100 poranHla2,100 potPathoIndel,61 rappuoli,56 rappuoli,383 rappuoli,516 rappuoli,545 resistPred,38 resistPred,48 resistPred,63 rosettaMhc,70 sarsCov2Phylo,423 sarsCov2Phylo,440 sarsCov2PhyloPub,452 sarsCov2PhyloPub,469 spikeMuts,4 spikeMuts,18 spikeMuts,40 spikeMuts,67 spikeMuts,101 strainCons119way,876 strainCons119way,901 strainCons44way,824 strainCons44way,849 unipCov2AliSwissprot,1 unipCov2AliSwissprot,12 unipCov2AliSwissprot,18 unipCov2AliSwissprot,34 unipCov2AliSwissprot,51 unipCov2AliSwissprot,58 unipCov2AliSwissprot,445 unipCov2AliSwissprot,450 unipCov2AliSwissprot,497 unipCov2Chain,1 unipCov2Chain,4 unipCov2Chain,11 unipCov2Chain,17 unipCov2Chain,64 unipCov2Chain,86 unipCov2Chain,137 unipCov2Chain,141 unipCov2Chain,152 unipCov2Chain,163 unipCov2Chain,178 unipCov2Chain,183 unipCov2Chain,218 unipCov2Chain,674 unipCov2Chain,679 unipCov2Chain,726 unipCov2DisulfBond,7 unipCov2DisulfBond,13 unipCov2DisulfBond,60 unipCov2DisulfBond,82 unipCov2DisulfBond,133 unipCov2DisulfBond,137 unipCov2DisulfBond,148 unipCov2DisulfBond,159 unipCov2DisulfBond,174 unipCov2DisulfBond,179 unipCov2DisulfBond,214 unipCov2DisulfBond,670 unipCov2DisulfBond,675 unipCov2DisulfBond,722 unipCov2Domain,1 unipCov2Domain,6 unipCov2Domain,12 unipCov2Domain,59 unipCov2Domain,81 unipCov2Domain,132 unipCov2Domain,136 unipCov2Domain,147 unipCov2Domain,158 unipCov2Domain,173 unipCov2Domain,178 unipCov2Domain,213 unipCov2Domain,669 unipCov2Domain,674 unipCov2Domain,721 unipCov2Interest,8 unipCov2Interest,14 unipCov2Interest,328 unipCov2Interest,333 unipCov2Interest,380 unipCov2LocCytopl,6 unipCov2LocCytopl,12 unipCov2LocCytopl,59 unipCov2LocCytopl,81 unipCov2LocCytopl,132 unipCov2LocCytopl,136 unipCov2LocCytopl,147 unipCov2LocCytopl,158 unipCov2LocCytopl,173 unipCov2LocCytopl,178 unipCov2LocCytopl,213 unipCov2LocCytopl,669 unipCov2LocCytopl,674 unipCov2LocCytopl,721 unipCov2LocExtra,6 unipCov2LocExtra,12 unipCov2LocExtra,59 unipCov2LocExtra,81 unipCov2LocExtra,132 unipCov2LocExtra,136 unipCov2LocExtra,147 unipCov2LocExtra,158 unipCov2LocExtra,173 unipCov2LocExtra,178 unipCov2LocExtra,213 unipCov2LocExtra,669 unipCov2LocExtra,674 unipCov2LocExtra,721 unipCov2LocSignal,7 unipCov2LocSignal,13 unipCov2LocSignal,60 unipCov2LocSignal,82 unipCov2LocSignal,133 unipCov2LocSignal,137 unipCov2LocSignal,148 unipCov2LocSignal,159 unipCov2LocSignal,174 unipCov2LocSignal,179 unipCov2LocSignal,214 unipCov2LocSignal,670 unipCov2LocSignal,675 unipCov2LocSignal,722 unipCov2LocTransMemb,7 unipCov2LocTransMemb,13 unipCov2LocTransMemb,60 unipCov2LocTransMemb,82 unipCov2LocTransMemb,133 unipCov2LocTransMemb,137 unipCov2LocTransMemb,148 unipCov2LocTransMemb,159 unipCov2LocTransMemb,174 unipCov2LocTransMemb,179 unipCov2LocTransMemb,214 unipCov2LocTransMemb,670 unipCov2LocTransMemb,675 unipCov2LocTransMemb,722 unipCov2Modif,10 unipCov2Modif,16 unipCov2Modif,63 unipCov2Modif,85 unipCov2Modif,136 unipCov2Modif,140 unipCov2Modif,151 unipCov2Modif,162 unipCov2Modif,177 unipCov2Modif,182 unipCov2Modif,217 unipCov2Modif,673 unipCov2Modif,678 unipCov2Modif,725 unipCov2Mut,7 unipCov2Mut,13 unipCov2Mut,60 unipCov2Mut,82 unipCov2Mut,133 unipCov2Mut,137 unipCov2Mut,148 unipCov2Mut,159 unipCov2Mut,174 unipCov2Mut,179 unipCov2Mut,214 unipCov2Mut,670 unipCov2Mut,675 unipCov2Mut,722 unipCov2Other,7 unipCov2Other,13 unipCov2Other,60 unipCov2Other,82 unipCov2Other,133 unipCov2Other,137 unipCov2Other,148 unipCov2Other,159 unipCov2Other,174 unipCov2Other,179 unipCov2Other,214 unipCov2Other,670 unipCov2Other,675 unipCov2Other,722 unipCov2Repeat,5 unipCov2Repeat,11 unipCov2Repeat,58 unipCov2Repeat,80 unipCov2Repeat,131 unipCov2Repeat,135 unipCov2Repeat,146 unipCov2Repeat,157 unipCov2Repeat,172 unipCov2Repeat,177 unipCov2Repeat,212 unipCov2Repeat,668 unipCov2Repeat,673 unipCov2Repeat,720 unipCov2Struct,3 unipCov2Struct,9 unipCov2Struct,15 unipCov2Struct,62 unipCov2Struct,84 unipCov2Struct,135 unipCov2Struct,139 unipCov2Struct,150 unipCov2Struct,161 unipCov2Struct,176 unipCov2Struct,181 unipCov2Struct,216 unipCov2Struct,672 unipCov2Struct,677 unipCov2Struct,724 vaccines,438 protein-coding PhyloCSF_smooth,10 PhyloCSF_smooth,22 PhyloCSF_smooth,100 PhyloCSF_smooth,159 PhyloCSF_smooth,283 PhyloCSF_smooth,327 PhyloCSF_smooth,758 PhyloCSFpower,25 PhyloCSFpower,37 PhyloCSFpower,115 PhyloCSFpower,174 PhyloCSFpower,298 PhyloCSFpower,342 PhyloCSFpower,687 PhyloCSFpower,737 augustusGene,73 nextstrainGene,81 phyloGenes,18 phyloGenes,79 phyloGenes,167 phyloGenes,183 phyloGenes,508 protein-drug resistPred,95 protein-protein gordon2,27 gordon2,259 proteins cd8escape,113 contacts,12 gordon2,5 gordon2,46 gordon2,64 gordon2,69 gordon2,80 gordon2,203 icshape,222 ncbiProducts,2 ncbiProducts,4 ncbiProducts,17 pbmShanghai,98 resistPred,56 resistPred,119 unipCov2AliSwissprot,8 unipCov2AliSwissprot,229 unipCov2Chain,128 unipCov2DisulfBond,124 unipCov2Domain,123 unipCov2LocCytopl,123 unipCov2LocExtra,123 unipCov2LocSignal,124 unipCov2LocTransMemb,124 unipCov2Modif,127 unipCov2Mut,124 unipCov2Other,124 unipCov2Repeat,122 unipCov2Struct,126 proteome IgG_Z-score-_COVID-19_patients,6 IgG_Z-score-_COVID-19_patients,30 IgG_Z-score-_COVID-19_patients,428 IgM_Z-score-_COVID-19_patients,6 IgM_Z-score-_COVID-19_patients,30 IgM_Z-score-_COVID-19_patients,428 bpmIggCovidSum,7 bpmIggCovidSum,39 bpmIggCovidSum,437 bpmIgmCovidSum,7 bpmIgmCovidSum,39 bpmIgmCovidSum,437 pbm,5 pbm,39 pbm,437 rosettaMhc,258 protoc rapid,367 protocol artic,25 articV4,25 articV4_1,25 crisprDet,85 crisprDet,104 crisprDet,105 primers,171 rapid,26 protocols rapid,132 provide epitopes,150 nextstrainSamples,625 pyle,190 provided Q0_tracks,237 Q0_tracks,1184 Q1_tracks,239 Q1_tracks,1186 Q2_tracks,239 Q2_tracks,1186 Q3_tracks,239 Q3_tracks,1186 addgene,105 galaxyEna,239 galaxyEna,1186 galaxyEnaQ0Ba-1,235 galaxyEnaQ0Ba-1,1182 galaxyEnaQ0Ba-1-1,235 galaxyEnaQ0Ba-1-1,1182 galaxyEnaQ0Ba-1-1-11,235 galaxyEnaQ0Ba-1-1-11,1182 galaxyEnaQ0Ba-1-17,235 galaxyEnaQ0Ba-1-17,1182 galaxyEnaQ0Ba-2,235 galaxyEnaQ0Ba-2,1182 galaxyEnaQ1Ay-4,235 galaxyEnaQ1Ay-4,1182 galaxyEnaQ1Ay-4-2,235 galaxyEnaQ1Ay-4-2,1182 galaxyEnaQ1Ay-4-2-2,235 galaxyEnaQ1Ay-4-2-2,1182 galaxyEnaQ1Ay-43,235 galaxyEnaQ1Ay-43,1182 galaxyEnaQ1Ba-1-17,235 galaxyEnaQ1Ba-1-17,1182 galaxyEnaQ2Ay-120,235 galaxyEnaQ2Ay-120,1182 galaxyEnaQ2Ay-122,235 galaxyEnaQ2Ay-122,1182 galaxyEnaQ2Ay-4,235 galaxyEnaQ2Ay-4,1182 galaxyEnaQ2Ay-5,235 galaxyEnaQ2Ay-5,1182 galaxyEnaQ2Ay-6,235 galaxyEnaQ2Ay-6,1182 galaxyEnaQ3Ay-4,235 galaxyEnaQ3Ay-4,1182 galaxyEnaQ3Ay-5,235 galaxyEnaQ3Ay-5,1182 galaxyEnaQ3Ay-9,235 galaxyEnaQ3Ay-9,1182 galaxyEnaQ3B-1-1-7,235 galaxyEnaQ3B-1-1-7,1182 galaxyEnaQ3B-1-617-2,235 galaxyEnaQ3B-1-617-2,1182 icshape,30 iedb,95 microdel,126 pond,221 rfam,109 sarsCov2PhyloPub,1031 spikeMuts,144 strainCons119way,425 strainCons44way,373 treangen,153 provides PhyloCSF_smooth,66 PhyloCSFpower,81 gap,32 gold,34 nextstrainSamples,189 unipCov2AliSwissprot,115 unipCov2Chain,300 unipCov2DisulfBond,296 unipCov2Domain,295 unipCov2LocCytopl,295 unipCov2LocExtra,295 unipCov2LocSignal,296 unipCov2LocTransMemb,296 unipCov2Modif,299 unipCov2Mut,296 unipCov2Other,296 unipCov2Repeat,294 unipCov2Struct,298 providing Q0_tracks,69 Q1_tracks,71 Q2_tracks,71 Q3_tracks,71 augustusGene,254 galaxyEna,71 galaxyEnaQ0Ba-1,67 galaxyEnaQ0Ba-1-1,67 galaxyEnaQ0Ba-1-1-11,67 galaxyEnaQ0Ba-1-17,67 galaxyEnaQ0Ba-2,67 galaxyEnaQ1Ay-4,67 galaxyEnaQ1Ay-4-2,67 galaxyEnaQ1Ay-4-2-2,67 galaxyEnaQ1Ay-43,67 galaxyEnaQ1Ba-1-17,67 galaxyEnaQ2Ay-120,67 galaxyEnaQ2Ay-122,67 galaxyEnaQ2Ay-4,67 galaxyEnaQ2Ay-5,67 galaxyEnaQ2Ay-6,67 galaxyEnaQ3Ay-4,67 galaxyEnaQ3Ay-5,67 galaxyEnaQ3Ay-9,67 galaxyEnaQ3B-1-1-7,67 galaxyEnaQ3B-1-617-2,67 genscan,175 microdel,236 microdel,262 vaccines,627 proximal problematicSites,361 proximity contacts,171 contacts,210 ps sarsCov2Phylo,1124 sarsCov2PhyloPub,1257 pseudoknot rfam,36 psl primers,320 vaccines,101 vaccines,225 vaccines,361 pslfilter vaccines,274 pslmap unipCov2AliSwissprot,178 unipCov2AliSwissprot,204 unipCov2Chain,431 unipCov2Chain,457 unipCov2DisulfBond,427 unipCov2DisulfBond,453 unipCov2Domain,426 unipCov2Domain,452 unipCov2Interest,107 unipCov2Interest,133 unipCov2LocCytopl,426 unipCov2LocCytopl,452 unipCov2LocExtra,426 unipCov2LocExtra,452 unipCov2LocSignal,427 unipCov2LocSignal,453 unipCov2LocTransMemb,427 unipCov2LocTransMemb,453 unipCov2Modif,430 unipCov2Modif,456 unipCov2Mut,427 unipCov2Mut,453 unipCov2Other,427 unipCov2Other,453 unipCov2Repeat,425 unipCov2Repeat,451 unipCov2Struct,429 unipCov2Struct,455 pslreps primers,303 unipCov2AliSwissprot,165 unipCov2Chain,418 unipCov2DisulfBond,414 unipCov2Domain,413 unipCov2Interest,94 unipCov2LocCytopl,413 unipCov2LocExtra,413 unipCov2LocSignal,414 unipCov2LocTransMemb,414 unipCov2Modif,417 unipCov2Mut,414 unipCov2Other,414 unipCov2Repeat,412 unipCov2Struct,416 pslscore vaccines,279 psltobigpsl vaccines,325 public Q0_tracks,43 Q0_tracks,53 Q0_tracks,184 Q0_tracks,193 Q0_tracks,234 Q0_tracks,813 Q0_tracks,830 Q0_tracks,971 Q0_tracks,1170 Q0_tracks,1341 Q1_tracks,45 Q1_tracks,55 Q1_tracks,186 Q1_tracks,195 Q1_tracks,236 Q1_tracks,815 Q1_tracks,832 Q1_tracks,973 Q1_tracks,1172 Q1_tracks,1343 Q2_tracks,45 Q2_tracks,55 Q2_tracks,186 Q2_tracks,195 Q2_tracks,236 Q2_tracks,815 Q2_tracks,832 Q2_tracks,973 Q2_tracks,1172 Q2_tracks,1343 Q3_tracks,45 Q3_tracks,55 Q3_tracks,186 Q3_tracks,195 Q3_tracks,236 Q3_tracks,815 Q3_tracks,832 Q3_tracks,973 Q3_tracks,1172 Q3_tracks,1343 cpgIslandExt,537 cpgIslandExtUnmasked,540 cpgIslandSuper,537 galaxyEna,13 galaxyEna,45 galaxyEna,55 galaxyEna,186 galaxyEna,195 galaxyEna,236 galaxyEna,815 galaxyEna,832 galaxyEna,973 galaxyEna,1172 galaxyEna,1343 galaxyEnaQ0Ba-1,41 galaxyEnaQ0Ba-1,51 galaxyEnaQ0Ba-1,182 galaxyEnaQ0Ba-1,191 galaxyEnaQ0Ba-1,232 galaxyEnaQ0Ba-1,811 galaxyEnaQ0Ba-1,828 galaxyEnaQ0Ba-1,969 galaxyEnaQ0Ba-1,1168 galaxyEnaQ0Ba-1,1339 galaxyEnaQ0Ba-1-1,41 galaxyEnaQ0Ba-1-1,51 galaxyEnaQ0Ba-1-1,182 galaxyEnaQ0Ba-1-1,191 galaxyEnaQ0Ba-1-1,232 galaxyEnaQ0Ba-1-1,811 galaxyEnaQ0Ba-1-1,828 galaxyEnaQ0Ba-1-1,969 galaxyEnaQ0Ba-1-1,1168 galaxyEnaQ0Ba-1-1,1339 galaxyEnaQ0Ba-1-1-11,41 galaxyEnaQ0Ba-1-1-11,51 galaxyEnaQ0Ba-1-1-11,182 galaxyEnaQ0Ba-1-1-11,191 galaxyEnaQ0Ba-1-1-11,232 galaxyEnaQ0Ba-1-1-11,811 galaxyEnaQ0Ba-1-1-11,828 galaxyEnaQ0Ba-1-1-11,969 galaxyEnaQ0Ba-1-1-11,1168 galaxyEnaQ0Ba-1-1-11,1339 galaxyEnaQ0Ba-1-17,41 galaxyEnaQ0Ba-1-17,51 galaxyEnaQ0Ba-1-17,182 galaxyEnaQ0Ba-1-17,191 galaxyEnaQ0Ba-1-17,232 galaxyEnaQ0Ba-1-17,811 galaxyEnaQ0Ba-1-17,828 galaxyEnaQ0Ba-1-17,969 galaxyEnaQ0Ba-1-17,1168 galaxyEnaQ0Ba-1-17,1339 galaxyEnaQ0Ba-2,41 galaxyEnaQ0Ba-2,51 galaxyEnaQ0Ba-2,182 galaxyEnaQ0Ba-2,191 galaxyEnaQ0Ba-2,232 galaxyEnaQ0Ba-2,811 galaxyEnaQ0Ba-2,828 galaxyEnaQ0Ba-2,969 galaxyEnaQ0Ba-2,1168 galaxyEnaQ0Ba-2,1339 galaxyEnaQ1Ay-4,41 galaxyEnaQ1Ay-4,51 galaxyEnaQ1Ay-4,182 galaxyEnaQ1Ay-4,191 galaxyEnaQ1Ay-4,232 galaxyEnaQ1Ay-4,811 galaxyEnaQ1Ay-4,828 galaxyEnaQ1Ay-4,969 galaxyEnaQ1Ay-4,1168 galaxyEnaQ1Ay-4,1339 galaxyEnaQ1Ay-4-2,41 galaxyEnaQ1Ay-4-2,51 galaxyEnaQ1Ay-4-2,182 galaxyEnaQ1Ay-4-2,191 galaxyEnaQ1Ay-4-2,232 galaxyEnaQ1Ay-4-2,811 galaxyEnaQ1Ay-4-2,828 galaxyEnaQ1Ay-4-2,969 galaxyEnaQ1Ay-4-2,1168 galaxyEnaQ1Ay-4-2,1339 galaxyEnaQ1Ay-4-2-2,41 galaxyEnaQ1Ay-4-2-2,51 galaxyEnaQ1Ay-4-2-2,182 galaxyEnaQ1Ay-4-2-2,191 galaxyEnaQ1Ay-4-2-2,232 galaxyEnaQ1Ay-4-2-2,811 galaxyEnaQ1Ay-4-2-2,828 galaxyEnaQ1Ay-4-2-2,969 galaxyEnaQ1Ay-4-2-2,1168 galaxyEnaQ1Ay-4-2-2,1339 galaxyEnaQ1Ay-43,41 galaxyEnaQ1Ay-43,51 galaxyEnaQ1Ay-43,182 galaxyEnaQ1Ay-43,191 galaxyEnaQ1Ay-43,232 galaxyEnaQ1Ay-43,811 galaxyEnaQ1Ay-43,828 galaxyEnaQ1Ay-43,969 galaxyEnaQ1Ay-43,1168 galaxyEnaQ1Ay-43,1339 galaxyEnaQ1Ba-1-17,41 galaxyEnaQ1Ba-1-17,51 galaxyEnaQ1Ba-1-17,182 galaxyEnaQ1Ba-1-17,191 galaxyEnaQ1Ba-1-17,232 galaxyEnaQ1Ba-1-17,811 galaxyEnaQ1Ba-1-17,828 galaxyEnaQ1Ba-1-17,969 galaxyEnaQ1Ba-1-17,1168 galaxyEnaQ1Ba-1-17,1339 galaxyEnaQ2Ay-120,41 galaxyEnaQ2Ay-120,51 galaxyEnaQ2Ay-120,182 galaxyEnaQ2Ay-120,191 galaxyEnaQ2Ay-120,232 galaxyEnaQ2Ay-120,811 galaxyEnaQ2Ay-120,828 galaxyEnaQ2Ay-120,969 galaxyEnaQ2Ay-120,1168 galaxyEnaQ2Ay-120,1339 galaxyEnaQ2Ay-122,41 galaxyEnaQ2Ay-122,51 galaxyEnaQ2Ay-122,182 galaxyEnaQ2Ay-122,191 galaxyEnaQ2Ay-122,232 galaxyEnaQ2Ay-122,811 galaxyEnaQ2Ay-122,828 galaxyEnaQ2Ay-122,969 galaxyEnaQ2Ay-122,1168 galaxyEnaQ2Ay-122,1339 galaxyEnaQ2Ay-4,41 galaxyEnaQ2Ay-4,51 galaxyEnaQ2Ay-4,182 galaxyEnaQ2Ay-4,191 galaxyEnaQ2Ay-4,232 galaxyEnaQ2Ay-4,811 galaxyEnaQ2Ay-4,828 galaxyEnaQ2Ay-4,969 galaxyEnaQ2Ay-4,1168 galaxyEnaQ2Ay-4,1339 galaxyEnaQ2Ay-5,41 galaxyEnaQ2Ay-5,51 galaxyEnaQ2Ay-5,182 galaxyEnaQ2Ay-5,191 galaxyEnaQ2Ay-5,232 galaxyEnaQ2Ay-5,811 galaxyEnaQ2Ay-5,828 galaxyEnaQ2Ay-5,969 galaxyEnaQ2Ay-5,1168 galaxyEnaQ2Ay-5,1339 galaxyEnaQ2Ay-6,41 galaxyEnaQ2Ay-6,51 galaxyEnaQ2Ay-6,182 galaxyEnaQ2Ay-6,191 galaxyEnaQ2Ay-6,232 galaxyEnaQ2Ay-6,811 galaxyEnaQ2Ay-6,828 galaxyEnaQ2Ay-6,969 galaxyEnaQ2Ay-6,1168 galaxyEnaQ2Ay-6,1339 galaxyEnaQ3Ay-4,41 galaxyEnaQ3Ay-4,51 galaxyEnaQ3Ay-4,182 galaxyEnaQ3Ay-4,191 galaxyEnaQ3Ay-4,232 galaxyEnaQ3Ay-4,811 galaxyEnaQ3Ay-4,828 galaxyEnaQ3Ay-4,969 galaxyEnaQ3Ay-4,1168 galaxyEnaQ3Ay-4,1339 galaxyEnaQ3Ay-5,41 galaxyEnaQ3Ay-5,51 galaxyEnaQ3Ay-5,182 galaxyEnaQ3Ay-5,191 galaxyEnaQ3Ay-5,232 galaxyEnaQ3Ay-5,811 galaxyEnaQ3Ay-5,828 galaxyEnaQ3Ay-5,969 galaxyEnaQ3Ay-5,1168 galaxyEnaQ3Ay-5,1339 galaxyEnaQ3Ay-9,41 galaxyEnaQ3Ay-9,51 galaxyEnaQ3Ay-9,182 galaxyEnaQ3Ay-9,191 galaxyEnaQ3Ay-9,232 galaxyEnaQ3Ay-9,811 galaxyEnaQ3Ay-9,828 galaxyEnaQ3Ay-9,969 galaxyEnaQ3Ay-9,1168 galaxyEnaQ3Ay-9,1339 galaxyEnaQ3B-1-1-7,41 galaxyEnaQ3B-1-1-7,51 galaxyEnaQ3B-1-1-7,182 galaxyEnaQ3B-1-1-7,191 galaxyEnaQ3B-1-1-7,232 galaxyEnaQ3B-1-1-7,811 galaxyEnaQ3B-1-1-7,828 galaxyEnaQ3B-1-1-7,969 galaxyEnaQ3B-1-1-7,1168 galaxyEnaQ3B-1-1-7,1339 galaxyEnaQ3B-1-617-2,41 galaxyEnaQ3B-1-617-2,51 galaxyEnaQ3B-1-617-2,182 galaxyEnaQ3B-1-617-2,191 galaxyEnaQ3B-1-617-2,232 galaxyEnaQ3B-1-617-2,811 galaxyEnaQ3B-1-617-2,828 galaxyEnaQ3B-1-617-2,969 galaxyEnaQ3B-1-617-2,1168 galaxyEnaQ3B-1-617-2,1339 microdel,220 publicAnnots,21 sarsCov2PhyloPub,2 sarsCov2PhyloPub,12 sarsCov2PhyloPub,25 sarsCov2PhyloPub,722 sarsCov2PhyloPub,953 sarsCov2PhyloPubAllFull,10 sarsCov2PhyloPubAllMinAf001,13 sarsCov2PhyloPubAllMinAf01,13 public-sequence-only sarsCov2PhyloPub,857 public.ambigton.vcf.gz sarsCov2PhyloPub,852 public.minaf.001.vcf.gz sarsCov2PhyloPub,849 public.minaf.01.vcf.gz sarsCov2PhyloPub,839 publically Q0_tracks,1198 Q1_tracks,1200 Q2_tracks,1200 Q3_tracks,1200 galaxyEna,1200 galaxyEnaQ0Ba-1,1196 galaxyEnaQ0Ba-1-1,1196 galaxyEnaQ0Ba-1-1-11,1196 galaxyEnaQ0Ba-1-17,1196 galaxyEnaQ0Ba-2,1196 galaxyEnaQ1Ay-4,1196 galaxyEnaQ1Ay-4-2,1196 galaxyEnaQ1Ay-4-2-2,1196 galaxyEnaQ1Ay-43,1196 galaxyEnaQ1Ba-1-17,1196 galaxyEnaQ2Ay-120,1196 galaxyEnaQ2Ay-122,1196 galaxyEnaQ2Ay-4,1196 galaxyEnaQ2Ay-5,1196 galaxyEnaQ2Ay-6,1196 galaxyEnaQ3Ay-4,1196 galaxyEnaQ3Ay-5,1196 galaxyEnaQ3Ay-9,1196 galaxyEnaQ3B-1-1-7,1196 galaxyEnaQ3B-1-617-2,1196 publication IgG_Z-score-_COVID-19_patients,176 IgM_Z-score-_COVID-19_patients,176 bpmIggCovidSum,185 bpmIgmCovidSum,185 epitopes,69 pbm,185 publications spikeMuts,177 unipCov2AliSwissprot,66 unipCov2Chain,36 unipCov2DisulfBond,32 unipCov2Domain,31 unipCov2Interest,38 unipCov2LocCytopl,31 unipCov2LocExtra,31 unipCov2LocSignal,32 unipCov2LocTransMemb,32 unipCov2Modif,35 unipCov2Mut,32 unipCov2Other,32 unipCov2Repeat,30 unipCov2Struct,34 publicly Q0_tracks,150 Q0_tracks,1008 Q1_tracks,152 Q1_tracks,1010 Q2_tracks,152 Q2_tracks,1010 Q3_tracks,152 Q3_tracks,1010 galaxyEna,152 galaxyEna,1010 galaxyEnaQ0Ba-1,148 galaxyEnaQ0Ba-1,1006 galaxyEnaQ0Ba-1-1,148 galaxyEnaQ0Ba-1-1,1006 galaxyEnaQ0Ba-1-1-11,148 galaxyEnaQ0Ba-1-1-11,1006 galaxyEnaQ0Ba-1-17,148 galaxyEnaQ0Ba-1-17,1006 galaxyEnaQ0Ba-2,148 galaxyEnaQ0Ba-2,1006 galaxyEnaQ1Ay-4,148 galaxyEnaQ1Ay-4,1006 galaxyEnaQ1Ay-4-2,148 galaxyEnaQ1Ay-4-2,1006 galaxyEnaQ1Ay-4-2-2,148 galaxyEnaQ1Ay-4-2-2,1006 galaxyEnaQ1Ay-43,148 galaxyEnaQ1Ay-43,1006 galaxyEnaQ1Ba-1-17,148 galaxyEnaQ1Ba-1-17,1006 galaxyEnaQ2Ay-120,148 galaxyEnaQ2Ay-120,1006 galaxyEnaQ2Ay-122,148 galaxyEnaQ2Ay-122,1006 galaxyEnaQ2Ay-4,148 galaxyEnaQ2Ay-4,1006 galaxyEnaQ2Ay-5,148 galaxyEnaQ2Ay-5,1006 galaxyEnaQ2Ay-6,148 galaxyEnaQ2Ay-6,1006 galaxyEnaQ3Ay-4,148 galaxyEnaQ3Ay-4,1006 galaxyEnaQ3Ay-5,148 galaxyEnaQ3Ay-5,1006 galaxyEnaQ3Ay-9,148 galaxyEnaQ3Ay-9,1006 galaxyEnaQ3B-1-1-7,148 galaxyEnaQ3B-1-1-7,1006 galaxyEnaQ3B-1-617-2,148 galaxyEnaQ3B-1-617-2,1006 rosettaMhc,112 publish nextstrainFreq,301 nextstrainSamples,953 sarsCov2Phylo,903 sarsCov2PhyloPub,1009 published addgene,51 pond,36 treangen,67 vaccines,33 pull-down multiz7way,431 multiz7way,488 strainCons119way,781 strainCons119way,838 strainCons44way,729 strainCons44way,786 puller nextstrainFreq,414 nextstrainSamples,1034 purification gordon2,57 purpleace2 spikeMuts,197 purplesummer spikeMuts,208 purpose simpleRepeat,32 purposes gordon2,134 pyle,131 put IgG_Z-score-_COVID-19_patients,120 IgM_Z-score-_COVID-19_patients,120 bpmIggCovidSum,129 bpmIgmCovidSum,129 pbm,129 pbmShanghai,186 putative poranHla1,12 poranHla2,12 targets,58 vaccines,517 puts nextstrainClade,142 pybus sarsCov2Phylo,950 sarsCov2PhyloPub,1070 variantMuts,1257 variantMuts,1283 pyle pyle,3 pyle,9 pyle,21 pyle,287 pyle,316 pylelab pyle,275 q rnaStructRangan,41 treangen,303 vaccines,241 vaccines,262 q_bind_avg Q_bind_avg,1 q_expr_avg Q_expr_avg_Expression,1 qc Q0_tracks,856 Q1_tracks,858 Q2_tracks,858 Q3_tracks,858 galaxyEna,858 galaxyEnaQ0Ba-1,854 galaxyEnaQ0Ba-1-1,854 galaxyEnaQ0Ba-1-1-11,854 galaxyEnaQ0Ba-1-17,854 galaxyEnaQ0Ba-2,854 galaxyEnaQ1Ay-4,854 galaxyEnaQ1Ay-4-2,854 galaxyEnaQ1Ay-4-2-2,854 galaxyEnaQ1Ay-43,854 galaxyEnaQ1Ba-1-17,854 galaxyEnaQ2Ay-120,854 galaxyEnaQ2Ay-122,854 galaxyEnaQ2Ay-4,854 galaxyEnaQ2Ay-5,854 galaxyEnaQ2Ay-6,854 galaxyEnaQ3Ay-4,854 galaxyEnaQ3Ay-5,854 galaxyEnaQ3Ay-9,854 galaxyEnaQ3B-1-1-7,854 galaxyEnaQ3B-1-617-2,854 qf pbmShanghai,509 qi cas13Crispr,484 pbmShanghai,506 qiang icshape,201 qiangfeng icshape,32 icshape,205 qname vaccines,284 qrt-pcr treangen,80 treangen,321 qstart-qend vaccines,285 quality addgene,40 microdel,240 multiz7way,125 strainCons119way,474 strainCons44way,422 variantMuts,952 quantified cas13Crispr,148 cas13Crispr,167 quantitative pbmShanghai,277 quarter Q0_tracks,8 Q0_tracks,14 Q0_tracks,317 Q0_tracks,335 Q0_tracks,355 Q0_tracks,380 Q0_tracks,444 Q0_tracks,580 Q0_tracks,652 Q0_tracks,695 Q0_tracks,709 Q0_tracks,754 Q0_tracks,1087 Q0_tracks,1097 Q1_tracks,8 Q1_tracks,15 Q1_tracks,319 Q1_tracks,337 Q1_tracks,357 Q1_tracks,382 Q1_tracks,446 Q1_tracks,582 Q1_tracks,654 Q1_tracks,697 Q1_tracks,711 Q1_tracks,756 Q1_tracks,1089 Q1_tracks,1099 Q2_tracks,319 Q2_tracks,337 Q2_tracks,357 Q2_tracks,382 Q2_tracks,446 Q2_tracks,582 Q2_tracks,654 Q2_tracks,697 Q2_tracks,711 Q2_tracks,756 Q2_tracks,1089 Q2_tracks,1099 Q3_tracks,319 Q3_tracks,337 Q3_tracks,357 Q3_tracks,382 Q3_tracks,446 Q3_tracks,582 Q3_tracks,654 Q3_tracks,697 Q3_tracks,711 Q3_tracks,756 Q3_tracks,1089 Q3_tracks,1099 galaxyEna,319 galaxyEna,337 galaxyEna,357 galaxyEna,382 galaxyEna,446 galaxyEna,582 galaxyEna,654 galaxyEna,697 galaxyEna,711 galaxyEna,756 galaxyEna,1089 galaxyEna,1099 galaxyEnaQ0Ba-1,315 galaxyEnaQ0Ba-1,333 galaxyEnaQ0Ba-1,353 galaxyEnaQ0Ba-1,378 galaxyEnaQ0Ba-1,442 galaxyEnaQ0Ba-1,578 galaxyEnaQ0Ba-1,650 galaxyEnaQ0Ba-1,693 galaxyEnaQ0Ba-1,707 galaxyEnaQ0Ba-1,752 galaxyEnaQ0Ba-1,1085 galaxyEnaQ0Ba-1,1095 galaxyEnaQ0Ba-1-1,315 galaxyEnaQ0Ba-1-1,333 galaxyEnaQ0Ba-1-1,353 galaxyEnaQ0Ba-1-1,378 galaxyEnaQ0Ba-1-1,442 galaxyEnaQ0Ba-1-1,578 galaxyEnaQ0Ba-1-1,650 galaxyEnaQ0Ba-1-1,693 galaxyEnaQ0Ba-1-1,707 galaxyEnaQ0Ba-1-1,752 galaxyEnaQ0Ba-1-1,1085 galaxyEnaQ0Ba-1-1,1095 galaxyEnaQ0Ba-1-1-11,315 galaxyEnaQ0Ba-1-1-11,333 galaxyEnaQ0Ba-1-1-11,353 galaxyEnaQ0Ba-1-1-11,378 galaxyEnaQ0Ba-1-1-11,442 galaxyEnaQ0Ba-1-1-11,578 galaxyEnaQ0Ba-1-1-11,650 galaxyEnaQ0Ba-1-1-11,693 galaxyEnaQ0Ba-1-1-11,707 galaxyEnaQ0Ba-1-1-11,752 galaxyEnaQ0Ba-1-1-11,1085 galaxyEnaQ0Ba-1-1-11,1095 galaxyEnaQ0Ba-1-17,315 galaxyEnaQ0Ba-1-17,333 galaxyEnaQ0Ba-1-17,353 galaxyEnaQ0Ba-1-17,378 galaxyEnaQ0Ba-1-17,442 galaxyEnaQ0Ba-1-17,578 galaxyEnaQ0Ba-1-17,650 galaxyEnaQ0Ba-1-17,693 galaxyEnaQ0Ba-1-17,707 galaxyEnaQ0Ba-1-17,752 galaxyEnaQ0Ba-1-17,1085 galaxyEnaQ0Ba-1-17,1095 galaxyEnaQ0Ba-2,315 galaxyEnaQ0Ba-2,333 galaxyEnaQ0Ba-2,353 galaxyEnaQ0Ba-2,378 galaxyEnaQ0Ba-2,442 galaxyEnaQ0Ba-2,578 galaxyEnaQ0Ba-2,650 galaxyEnaQ0Ba-2,693 galaxyEnaQ0Ba-2,707 galaxyEnaQ0Ba-2,752 galaxyEnaQ0Ba-2,1085 galaxyEnaQ0Ba-2,1095 galaxyEnaQ1Ay-4,315 galaxyEnaQ1Ay-4,333 galaxyEnaQ1Ay-4,353 galaxyEnaQ1Ay-4,378 galaxyEnaQ1Ay-4,442 galaxyEnaQ1Ay-4,578 galaxyEnaQ1Ay-4,650 galaxyEnaQ1Ay-4,693 galaxyEnaQ1Ay-4,707 galaxyEnaQ1Ay-4,752 galaxyEnaQ1Ay-4,1085 galaxyEnaQ1Ay-4,1095 galaxyEnaQ1Ay-4-2,315 galaxyEnaQ1Ay-4-2,333 galaxyEnaQ1Ay-4-2,353 galaxyEnaQ1Ay-4-2,378 galaxyEnaQ1Ay-4-2,442 galaxyEnaQ1Ay-4-2,578 galaxyEnaQ1Ay-4-2,650 galaxyEnaQ1Ay-4-2,693 galaxyEnaQ1Ay-4-2,707 galaxyEnaQ1Ay-4-2,752 galaxyEnaQ1Ay-4-2,1085 galaxyEnaQ1Ay-4-2,1095 galaxyEnaQ1Ay-4-2-2,315 galaxyEnaQ1Ay-4-2-2,333 galaxyEnaQ1Ay-4-2-2,353 galaxyEnaQ1Ay-4-2-2,378 galaxyEnaQ1Ay-4-2-2,442 galaxyEnaQ1Ay-4-2-2,578 galaxyEnaQ1Ay-4-2-2,650 galaxyEnaQ1Ay-4-2-2,693 galaxyEnaQ1Ay-4-2-2,707 galaxyEnaQ1Ay-4-2-2,752 galaxyEnaQ1Ay-4-2-2,1085 galaxyEnaQ1Ay-4-2-2,1095 galaxyEnaQ1Ay-43,315 galaxyEnaQ1Ay-43,333 galaxyEnaQ1Ay-43,353 galaxyEnaQ1Ay-43,378 galaxyEnaQ1Ay-43,442 galaxyEnaQ1Ay-43,578 galaxyEnaQ1Ay-43,650 galaxyEnaQ1Ay-43,693 galaxyEnaQ1Ay-43,707 galaxyEnaQ1Ay-43,752 galaxyEnaQ1Ay-43,1085 galaxyEnaQ1Ay-43,1095 galaxyEnaQ1Ba-1-17,315 galaxyEnaQ1Ba-1-17,333 galaxyEnaQ1Ba-1-17,353 galaxyEnaQ1Ba-1-17,378 galaxyEnaQ1Ba-1-17,442 galaxyEnaQ1Ba-1-17,578 galaxyEnaQ1Ba-1-17,650 galaxyEnaQ1Ba-1-17,693 galaxyEnaQ1Ba-1-17,707 galaxyEnaQ1Ba-1-17,752 galaxyEnaQ1Ba-1-17,1085 galaxyEnaQ1Ba-1-17,1095 galaxyEnaQ2Ay-120,315 galaxyEnaQ2Ay-120,333 galaxyEnaQ2Ay-120,353 galaxyEnaQ2Ay-120,378 galaxyEnaQ2Ay-120,442 galaxyEnaQ2Ay-120,578 galaxyEnaQ2Ay-120,650 galaxyEnaQ2Ay-120,693 galaxyEnaQ2Ay-120,707 galaxyEnaQ2Ay-120,752 galaxyEnaQ2Ay-120,1085 galaxyEnaQ2Ay-120,1095 galaxyEnaQ2Ay-122,315 galaxyEnaQ2Ay-122,333 galaxyEnaQ2Ay-122,353 galaxyEnaQ2Ay-122,378 galaxyEnaQ2Ay-122,442 galaxyEnaQ2Ay-122,578 galaxyEnaQ2Ay-122,650 galaxyEnaQ2Ay-122,693 galaxyEnaQ2Ay-122,707 galaxyEnaQ2Ay-122,752 galaxyEnaQ2Ay-122,1085 galaxyEnaQ2Ay-122,1095 galaxyEnaQ2Ay-4,315 galaxyEnaQ2Ay-4,333 galaxyEnaQ2Ay-4,353 galaxyEnaQ2Ay-4,378 galaxyEnaQ2Ay-4,442 galaxyEnaQ2Ay-4,578 galaxyEnaQ2Ay-4,650 galaxyEnaQ2Ay-4,693 galaxyEnaQ2Ay-4,707 galaxyEnaQ2Ay-4,752 galaxyEnaQ2Ay-4,1085 galaxyEnaQ2Ay-4,1095 galaxyEnaQ2Ay-5,315 galaxyEnaQ2Ay-5,333 galaxyEnaQ2Ay-5,353 galaxyEnaQ2Ay-5,378 galaxyEnaQ2Ay-5,442 galaxyEnaQ2Ay-5,578 galaxyEnaQ2Ay-5,650 galaxyEnaQ2Ay-5,693 galaxyEnaQ2Ay-5,707 galaxyEnaQ2Ay-5,752 galaxyEnaQ2Ay-5,1085 galaxyEnaQ2Ay-5,1095 galaxyEnaQ2Ay-6,315 galaxyEnaQ2Ay-6,333 galaxyEnaQ2Ay-6,353 galaxyEnaQ2Ay-6,378 galaxyEnaQ2Ay-6,442 galaxyEnaQ2Ay-6,578 galaxyEnaQ2Ay-6,650 galaxyEnaQ2Ay-6,693 galaxyEnaQ2Ay-6,707 galaxyEnaQ2Ay-6,752 galaxyEnaQ2Ay-6,1085 galaxyEnaQ2Ay-6,1095 galaxyEnaQ3Ay-4,315 galaxyEnaQ3Ay-4,333 galaxyEnaQ3Ay-4,353 galaxyEnaQ3Ay-4,378 galaxyEnaQ3Ay-4,442 galaxyEnaQ3Ay-4,578 galaxyEnaQ3Ay-4,650 galaxyEnaQ3Ay-4,693 galaxyEnaQ3Ay-4,707 galaxyEnaQ3Ay-4,752 galaxyEnaQ3Ay-4,1085 galaxyEnaQ3Ay-4,1095 galaxyEnaQ3Ay-5,315 galaxyEnaQ3Ay-5,333 galaxyEnaQ3Ay-5,353 galaxyEnaQ3Ay-5,378 galaxyEnaQ3Ay-5,442 galaxyEnaQ3Ay-5,578 galaxyEnaQ3Ay-5,650 galaxyEnaQ3Ay-5,693 galaxyEnaQ3Ay-5,707 galaxyEnaQ3Ay-5,752 galaxyEnaQ3Ay-5,1085 galaxyEnaQ3Ay-5,1095 galaxyEnaQ3Ay-9,315 galaxyEnaQ3Ay-9,333 galaxyEnaQ3Ay-9,353 galaxyEnaQ3Ay-9,378 galaxyEnaQ3Ay-9,442 galaxyEnaQ3Ay-9,578 galaxyEnaQ3Ay-9,650 galaxyEnaQ3Ay-9,693 galaxyEnaQ3Ay-9,707 galaxyEnaQ3Ay-9,752 galaxyEnaQ3Ay-9,1085 galaxyEnaQ3Ay-9,1095 galaxyEnaQ3B-1-1-7,315 galaxyEnaQ3B-1-1-7,333 galaxyEnaQ3B-1-1-7,353 galaxyEnaQ3B-1-1-7,378 galaxyEnaQ3B-1-1-7,442 galaxyEnaQ3B-1-1-7,578 galaxyEnaQ3B-1-1-7,650 galaxyEnaQ3B-1-1-7,693 galaxyEnaQ3B-1-1-7,707 galaxyEnaQ3B-1-1-7,752 galaxyEnaQ3B-1-1-7,1085 galaxyEnaQ3B-1-1-7,1095 galaxyEnaQ3B-1-617-2,315 galaxyEnaQ3B-1-617-2,333 galaxyEnaQ3B-1-617-2,353 galaxyEnaQ3B-1-617-2,378 galaxyEnaQ3B-1-617-2,442 galaxyEnaQ3B-1-617-2,578 galaxyEnaQ3B-1-617-2,650 galaxyEnaQ3B-1-617-2,693 galaxyEnaQ3B-1-617-2,707 galaxyEnaQ3B-1-617-2,752 galaxyEnaQ3B-1-617-2,1085 galaxyEnaQ3B-1-617-2,1095 quarters Q0_tracks,306 Q0_tracks,407 Q0_tracks,668 Q0_tracks,1075 Q1_tracks,308 Q1_tracks,409 Q1_tracks,670 Q1_tracks,1077 Q2_tracks,8 Q2_tracks,15 Q2_tracks,308 Q2_tracks,409 Q2_tracks,670 Q2_tracks,1077 Q3_tracks,8 Q3_tracks,15 Q3_tracks,308 Q3_tracks,409 Q3_tracks,670 Q3_tracks,1077 galaxyEna,308 galaxyEna,409 galaxyEna,670 galaxyEna,1077 galaxyEnaQ0Ba-1,304 galaxyEnaQ0Ba-1,405 galaxyEnaQ0Ba-1,666 galaxyEnaQ0Ba-1,1073 galaxyEnaQ0Ba-1-1,304 galaxyEnaQ0Ba-1-1,405 galaxyEnaQ0Ba-1-1,666 galaxyEnaQ0Ba-1-1,1073 galaxyEnaQ0Ba-1-1-11,304 galaxyEnaQ0Ba-1-1-11,405 galaxyEnaQ0Ba-1-1-11,666 galaxyEnaQ0Ba-1-1-11,1073 galaxyEnaQ0Ba-1-17,304 galaxyEnaQ0Ba-1-17,405 galaxyEnaQ0Ba-1-17,666 galaxyEnaQ0Ba-1-17,1073 galaxyEnaQ0Ba-2,304 galaxyEnaQ0Ba-2,405 galaxyEnaQ0Ba-2,666 galaxyEnaQ0Ba-2,1073 galaxyEnaQ1Ay-4,304 galaxyEnaQ1Ay-4,405 galaxyEnaQ1Ay-4,666 galaxyEnaQ1Ay-4,1073 galaxyEnaQ1Ay-4-2,304 galaxyEnaQ1Ay-4-2,405 galaxyEnaQ1Ay-4-2,666 galaxyEnaQ1Ay-4-2,1073 galaxyEnaQ1Ay-4-2-2,304 galaxyEnaQ1Ay-4-2-2,405 galaxyEnaQ1Ay-4-2-2,666 galaxyEnaQ1Ay-4-2-2,1073 galaxyEnaQ1Ay-43,304 galaxyEnaQ1Ay-43,405 galaxyEnaQ1Ay-43,666 galaxyEnaQ1Ay-43,1073 galaxyEnaQ1Ba-1-17,304 galaxyEnaQ1Ba-1-17,405 galaxyEnaQ1Ba-1-17,666 galaxyEnaQ1Ba-1-17,1073 galaxyEnaQ2Ay-120,304 galaxyEnaQ2Ay-120,405 galaxyEnaQ2Ay-120,666 galaxyEnaQ2Ay-120,1073 galaxyEnaQ2Ay-122,304 galaxyEnaQ2Ay-122,405 galaxyEnaQ2Ay-122,666 galaxyEnaQ2Ay-122,1073 galaxyEnaQ2Ay-4,304 galaxyEnaQ2Ay-4,405 galaxyEnaQ2Ay-4,666 galaxyEnaQ2Ay-4,1073 galaxyEnaQ2Ay-5,304 galaxyEnaQ2Ay-5,405 galaxyEnaQ2Ay-5,666 galaxyEnaQ2Ay-5,1073 galaxyEnaQ2Ay-6,304 galaxyEnaQ2Ay-6,405 galaxyEnaQ2Ay-6,666 galaxyEnaQ2Ay-6,1073 galaxyEnaQ3Ay-4,304 galaxyEnaQ3Ay-4,405 galaxyEnaQ3Ay-4,666 galaxyEnaQ3Ay-4,1073 galaxyEnaQ3Ay-5,304 galaxyEnaQ3Ay-5,405 galaxyEnaQ3Ay-5,666 galaxyEnaQ3Ay-5,1073 galaxyEnaQ3Ay-9,304 galaxyEnaQ3Ay-9,405 galaxyEnaQ3Ay-9,666 galaxyEnaQ3Ay-9,1073 galaxyEnaQ3B-1-1-7,304 galaxyEnaQ3B-1-1-7,405 galaxyEnaQ3B-1-1-7,666 galaxyEnaQ3B-1-1-7,1073 galaxyEnaQ3B-1-617-2,304 galaxyEnaQ3B-1-617-2,405 galaxyEnaQ3B-1-617-2,666 galaxyEnaQ3B-1-617-2,1073 quartile Q0_tracks,589 Q1_tracks,591 Q2_tracks,591 Q3_tracks,591 galaxyEna,591 galaxyEnaQ0Ba-1,587 galaxyEnaQ0Ba-1-1,587 galaxyEnaQ0Ba-1-1-11,587 galaxyEnaQ0Ba-1-17,587 galaxyEnaQ0Ba-2,587 galaxyEnaQ1Ay-4,587 galaxyEnaQ1Ay-4-2,587 galaxyEnaQ1Ay-4-2-2,587 galaxyEnaQ1Ay-43,587 galaxyEnaQ1Ba-1-17,587 galaxyEnaQ2Ay-120,587 galaxyEnaQ2Ay-122,587 galaxyEnaQ2Ay-4,587 galaxyEnaQ2Ay-5,587 galaxyEnaQ2Ay-6,587 galaxyEnaQ3Ay-4,587 galaxyEnaQ3Ay-5,587 galaxyEnaQ3Ay-9,587 galaxyEnaQ3B-1-1-7,587 galaxyEnaQ3B-1-617-2,587 queried cpgIslandExt,533 cpgIslandExtUnmasked,536 cpgIslandSuper,533 query pdb,128 unipCov2AliSwissprot,167 unipCov2Chain,420 unipCov2DisulfBond,416 unipCov2Domain,415 unipCov2Interest,96 unipCov2LocCytopl,415 unipCov2LocExtra,415 unipCov2LocSignal,416 unipCov2LocTransMemb,416 unipCov2Modif,419 unipCov2Mut,416 unipCov2Other,416 unipCov2Repeat,414 unipCov2Struct,418 variantMuts,830 question strainCons119way,1890 strainCons44way,1485 questions Calu3_07hpi,336 IgG_Z-score-_COVID-19_patients,392 IgM_Z-score-_COVID-19_patients,392 ORFs,334 PhyloCSF_smooth,661 PhyloCSF_smooth,673 PhyloCSFpower,635 Q0_tracks,1154 Q1_tracks,1156 Q2_tracks,1156 Q3_tracks,1156 Starr_Bloom,228 Starr_Bloom_bind,222 Vero6_05hpi,336 Vero6_24hpi,336 abEscape,680 artic,174 articV4,174 articV4_1,187 bloomEscMabAvg,684 bloomEscMax,690 bloomEscSerumAvg,685 bloomEscTop,688 bpmIggCovidSum,401 bpmIgmCovidSum,401 cas13Crispr,459 contacts,387 escape,687 galaxyEna,1156 galaxyEnaQ0Ba-1,1152 galaxyEnaQ0Ba-1-1,1152 galaxyEnaQ0Ba-1-1-11,1152 galaxyEnaQ0Ba-1-17,1152 galaxyEnaQ0Ba-2,1152 galaxyEnaQ1Ay-4,1152 galaxyEnaQ1Ay-4-2,1152 galaxyEnaQ1Ay-4-2-2,1152 galaxyEnaQ1Ay-43,1152 galaxyEnaQ1Ba-1-17,1152 galaxyEnaQ2Ay-120,1152 galaxyEnaQ2Ay-122,1152 galaxyEnaQ2Ay-4,1152 galaxyEnaQ2Ay-5,1152 galaxyEnaQ2Ay-6,1152 galaxyEnaQ3Ay-4,1152 galaxyEnaQ3Ay-5,1152 galaxyEnaQ3Ay-9,1152 galaxyEnaQ3B-1-1-7,1152 galaxyEnaQ3B-1-617-2,1152 icshape,171 kimRnaMod,221 kimTranscripts,439 mccoy,680 microdel,178 ncbiGeneBGP,154 ncbiProducts,170 nextstrainFreq,259 pbm,401 pbmShanghai,484 phyloGenes,436 phyloGenes,468 poranHla1,249 poranHla2,249 rapid,328 rappuoli,687 resist,131 resistPred,223 spikeMuts,346 swift,257 transcriptome,445 unipCov2AliSwissprot,391 unipCov2Chain,621 unipCov2DisulfBond,617 unipCov2Domain,616 unipCov2LocCytopl,616 unipCov2LocExtra,616 unipCov2LocSignal,617 unipCov2LocTransMemb,617 unipCov2Modif,620 unipCov2Mut,617 unipCov2Other,617 unipCov2Repeat,615 unipCov2Struct,619 varskip,180 weizmanOrfs,342 quick Q0_tracks,907 Q1_tracks,909 Q2_tracks,909 Q3_tracks,909 galaxyEna,909 galaxyEnaQ0Ba-1,905 galaxyEnaQ0Ba-1-1,905 galaxyEnaQ0Ba-1-1-11,905 galaxyEnaQ0Ba-1-17,905 galaxyEnaQ0Ba-2,905 galaxyEnaQ1Ay-4,905 galaxyEnaQ1Ay-4-2,905 galaxyEnaQ1Ay-4-2-2,905 galaxyEnaQ1Ay-43,905 galaxyEnaQ1Ba-1-17,905 galaxyEnaQ2Ay-120,905 galaxyEnaQ2Ay-122,905 galaxyEnaQ2Ay-4,905 galaxyEnaQ2Ay-5,905 galaxyEnaQ2Ay-6,905 galaxyEnaQ3Ay-4,905 galaxyEnaQ3Ay-5,905 galaxyEnaQ3Ay-9,905 galaxyEnaQ3B-1-1-7,905 galaxyEnaQ3B-1-617-2,905 primers,107 quite simpleRepeat,45 quot PhyloCSF_smooth,386 PhyloCSF_smooth,388 abEscape,278 abEscape,281 abEscape,292 abEscape,313 abEscape,314 abEscape,362 bloomEscMabAvg,282 bloomEscMabAvg,285 bloomEscMabAvg,296 bloomEscMabAvg,317 bloomEscMabAvg,318 bloomEscMabAvg,366 bloomEscMax,288 bloomEscMax,291 bloomEscMax,302 bloomEscMax,323 bloomEscMax,324 bloomEscMax,372 bloomEscSerumAvg,283 bloomEscSerumAvg,286 bloomEscSerumAvg,297 bloomEscSerumAvg,318 bloomEscSerumAvg,319 bloomEscSerumAvg,367 bloomEscTop,286 bloomEscTop,289 bloomEscTop,300 bloomEscTop,321 bloomEscTop,322 bloomEscTop,370 escape,285 escape,288 escape,299 escape,320 escape,321 escape,369 gc5BaseBw,58 gc5BaseBw,62 mccoy,278 mccoy,281 mccoy,292 mccoy,313 mccoy,314 mccoy,362 microdel,163 microdel,165 multiz7way,398 multiz7way,399 multiz7way,408 multiz7way,409 nextstrainFreq,335 nextstrainFreq,338 nextstrainSamples,304 nextstrainSamples,306 nextstrainSamples,322 nextstrainSamples,324 nextstrainSamples,722 nextstrainSamples,725 nextstrainSamples,768 nextstrainSamples,770 nextstrainSamples,827 nextstrainSamples,830 nextstrainSamples,861 nextstrainSamples,863 pbmShanghai,130 pbmShanghai,133 pbmShanghai,288 pbmShanghai,291 pond,98 pond,142 pond,145 pond,190 rapid,79 rapid,82 rapid,98 rapid,101 rappuoli,285 rappuoli,288 rappuoli,299 rappuoli,320 rappuoli,321 rappuoli,369 recomb,44 recomb,46 recomb,62 recomb,65 recomb,83 recomb,270 sarsCov2Phylo,309 sarsCov2Phylo,311 sarsCov2Phylo,327 sarsCov2Phylo,329 sarsCov2PhyloPub,316 sarsCov2PhyloPub,318 sarsCov2PhyloPub,334 sarsCov2PhyloPub,336 sarsCov2PhyloPub,338 sarsCov2PhyloPub,340 sarsCov2PhyloPub,365 sarsCov2PhyloPub,367 sarsCov2PhyloPub,757 sarsCov2PhyloPub,759 sarsCov2PhyloPub,761 sarsCov2PhyloPub,763 sarsCov2PhyloPub,767 sarsCov2PhyloPub,769 sarsCov2PhyloPub,771 sarsCov2PhyloPub,773 strainCons119way,740 strainCons119way,741 strainCons119way,750 strainCons119way,751 strainCons44way,688 strainCons44way,689 strainCons44way,698 strainCons44way,699 unipCov2AliSwissprot,94 unipCov2AliSwissprot,96 unipCov2AliSwissprot,97 unipCov2AliSwissprot,100 unipCov2AliSwissprot,101 unipCov2AliSwissprot,104 unipCov2Chain,52 unipCov2Chain,55 unipCov2Chain,146 unipCov2Chain,148 unipCov2Chain,157 unipCov2Chain,159 unipCov2Chain,168 unipCov2Chain,170 unipCov2Chain,279 unipCov2Chain,281 unipCov2Chain,282 unipCov2Chain,285 unipCov2Chain,286 unipCov2Chain,289 unipCov2Chain,381 unipCov2Chain,384 unipCov2DisulfBond,48 unipCov2DisulfBond,51 unipCov2DisulfBond,142 unipCov2DisulfBond,144 unipCov2DisulfBond,153 unipCov2DisulfBond,155 unipCov2DisulfBond,164 unipCov2DisulfBond,166 unipCov2DisulfBond,275 unipCov2DisulfBond,277 unipCov2DisulfBond,278 unipCov2DisulfBond,281 unipCov2DisulfBond,282 unipCov2DisulfBond,285 unipCov2DisulfBond,377 unipCov2DisulfBond,380 unipCov2Domain,47 unipCov2Domain,50 unipCov2Domain,141 unipCov2Domain,143 unipCov2Domain,152 unipCov2Domain,154 unipCov2Domain,163 unipCov2Domain,165 unipCov2Domain,274 unipCov2Domain,276 unipCov2Domain,277 unipCov2Domain,280 unipCov2Domain,281 unipCov2Domain,284 unipCov2Domain,376 unipCov2Domain,379 unipCov2LocCytopl,47 unipCov2LocCytopl,50 unipCov2LocCytopl,141 unipCov2LocCytopl,143 unipCov2LocCytopl,152 unipCov2LocCytopl,154 unipCov2LocCytopl,163 unipCov2LocCytopl,165 unipCov2LocCytopl,274 unipCov2LocCytopl,276 unipCov2LocCytopl,277 unipCov2LocCytopl,280 unipCov2LocCytopl,281 unipCov2LocCytopl,284 unipCov2LocCytopl,376 unipCov2LocCytopl,379 unipCov2LocExtra,47 unipCov2LocExtra,50 unipCov2LocExtra,141 unipCov2LocExtra,143 unipCov2LocExtra,152 unipCov2LocExtra,154 unipCov2LocExtra,163 unipCov2LocExtra,165 unipCov2LocExtra,274 unipCov2LocExtra,276 unipCov2LocExtra,277 unipCov2LocExtra,280 unipCov2LocExtra,281 unipCov2LocExtra,284 unipCov2LocExtra,376 unipCov2LocExtra,379 unipCov2LocSignal,48 unipCov2LocSignal,51 unipCov2LocSignal,142 unipCov2LocSignal,144 unipCov2LocSignal,153 unipCov2LocSignal,155 unipCov2LocSignal,164 unipCov2LocSignal,166 unipCov2LocSignal,275 unipCov2LocSignal,277 unipCov2LocSignal,278 unipCov2LocSignal,281 unipCov2LocSignal,282 unipCov2LocSignal,285 unipCov2LocSignal,377 unipCov2LocSignal,380 unipCov2LocTransMemb,48 unipCov2LocTransMemb,51 unipCov2LocTransMemb,142 unipCov2LocTransMemb,144 unipCov2LocTransMemb,153 unipCov2LocTransMemb,155 unipCov2LocTransMemb,164 unipCov2LocTransMemb,166 unipCov2LocTransMemb,275 unipCov2LocTransMemb,277 unipCov2LocTransMemb,278 unipCov2LocTransMemb,281 unipCov2LocTransMemb,282 unipCov2LocTransMemb,285 unipCov2LocTransMemb,377 unipCov2LocTransMemb,380 unipCov2Modif,51 unipCov2Modif,54 unipCov2Modif,145 unipCov2Modif,147 unipCov2Modif,156 unipCov2Modif,158 unipCov2Modif,167 unipCov2Modif,169 unipCov2Modif,278 unipCov2Modif,280 unipCov2Modif,281 unipCov2Modif,284 unipCov2Modif,285 unipCov2Modif,288 unipCov2Modif,380 unipCov2Modif,383 unipCov2Mut,48 unipCov2Mut,51 unipCov2Mut,142 unipCov2Mut,144 unipCov2Mut,153 unipCov2Mut,155 unipCov2Mut,164 unipCov2Mut,166 unipCov2Mut,275 unipCov2Mut,277 unipCov2Mut,278 unipCov2Mut,281 unipCov2Mut,282 unipCov2Mut,285 unipCov2Mut,377 unipCov2Mut,380 unipCov2Other,48 unipCov2Other,51 unipCov2Other,142 unipCov2Other,144 unipCov2Other,153 unipCov2Other,155 unipCov2Other,164 unipCov2Other,166 unipCov2Other,275 unipCov2Other,277 unipCov2Other,278 unipCov2Other,281 unipCov2Other,282 unipCov2Other,285 unipCov2Other,377 unipCov2Other,380 unipCov2Repeat,46 unipCov2Repeat,49 unipCov2Repeat,140 unipCov2Repeat,142 unipCov2Repeat,151 unipCov2Repeat,153 unipCov2Repeat,162 unipCov2Repeat,164 unipCov2Repeat,273 unipCov2Repeat,275 unipCov2Repeat,276 unipCov2Repeat,279 unipCov2Repeat,280 unipCov2Repeat,283 unipCov2Repeat,375 unipCov2Repeat,378 unipCov2Struct,50 unipCov2Struct,53 unipCov2Struct,144 unipCov2Struct,146 unipCov2Struct,155 unipCov2Struct,157 unipCov2Struct,166 unipCov2Struct,168 unipCov2Struct,277 unipCov2Struct,279 unipCov2Struct,280 unipCov2Struct,283 unipCov2Struct,284 unipCov2Struct,287 unipCov2Struct,379 unipCov2Struct,382 windowmaskerSdust,82 windowmaskerSdust,84 r PhyloCSF_smooth,749 PhyloCSF_smooth,784 PhyloCSFpower,715 PhyloCSFpower,759 Q0_tracks,1315 Q1_tracks,1317 Q2_tracks,1317 Q3_tracks,1317 abEscape,742 augustusGene,291 bloomEscMabAvg,746 bloomEscMax,752 bloomEscSerumAvg,747 bloomEscTop,750 cas13Crispr,492 escape,749 galaxyEna,1317 galaxyEnaQ0Ba-1,1313 galaxyEnaQ0Ba-1-1,1313 galaxyEnaQ0Ba-1-1-11,1313 galaxyEnaQ0Ba-1-17,1313 galaxyEnaQ0Ba-2,1313 galaxyEnaQ1Ay-4,1313 galaxyEnaQ1Ay-4-2,1313 galaxyEnaQ1Ay-4-2-2,1313 galaxyEnaQ1Ay-43,1313 galaxyEnaQ1Ba-1-17,1313 galaxyEnaQ2Ay-120,1313 galaxyEnaQ2Ay-122,1313 galaxyEnaQ2Ay-4,1313 galaxyEnaQ2Ay-5,1313 galaxyEnaQ2Ay-6,1313 galaxyEnaQ3Ay-4,1313 galaxyEnaQ3Ay-5,1313 galaxyEnaQ3Ay-9,1313 galaxyEnaQ3B-1-1-7,1313 galaxyEnaQ3B-1-617-2,1313 iedb,98 iedb,110 mccoy,742 multiz7way,1089 multiz7way,1129 multiz7way,1180 multiz7way,1254 phyloGenes,590 problematicSites,544 problematicSites,570 problematicSites,572 problematicSites,601 rappuoli,749 recomb,342 sarsCov2Phylo,1055 sarsCov2Phylo,1081 sarsCov2Phylo,1083 sarsCov2Phylo,1112 sarsCov2PhyloPub,1040 sarsCov2PhyloPub,1175 sarsCov2PhyloPub,1201 sarsCov2PhyloPub,1203 sarsCov2PhyloPub,1230 sarsCov2PhyloPub,1235 strainCons119way,2467 strainCons119way,2507 strainCons119way,2558 strainCons119way,2632 strainCons44way,2062 strainCons44way,2102 strainCons44way,2153 strainCons44way,2227 windowmaskerSdust,99 r_bind_avg R_bind_avg,1 r_expr_avg R_expr_avg_Expression,1 ra nextstrainClade,259 nextstrainFreq,394 nextstrainFreq,417 nextstrainGene,208 nextstrainParsimony,461 nextstrainSamples,1014 nextstrainSamples,1037 sarsCov2Phylo,987 sarsCov2PhyloPub,1107 treangen,301 ramakanth rfam,135 rambaut sarsCov2Phylo,132 sarsCov2Phylo,934 sarsCov2PhyloPub,143 sarsCov2PhyloPub,1054 variantMuts,1241 variantMuts,1279 ramona vaccines,510 ramya rnaStructRangan,103 random augustusGene,119 raney multiz7way,890 multiz7way,922 ncbiGeneBGP,173 ncbiProducts,189 rnaStructRangan,100 strainCons119way,2268 strainCons119way,2300 strainCons44way,1863 strainCons44way,1895 unipCov2AliSwissprot,419 unipCov2Chain,649 unipCov2DisulfBond,645 unipCov2Domain,644 unipCov2Interest,302 unipCov2LocCytopl,644 unipCov2LocExtra,644 unipCov2LocSignal,645 unipCov2LocTransMemb,645 unipCov2Modif,648 unipCov2Mut,645 unipCov2Other,645 unipCov2Repeat,643 unipCov2Struct,647 rangan rnaStructRangan,1 rnaStructRangan,3 rnaStructRangan,23 rnaStructRangan,102 range IgG_Z-score-_COVID-19_patients,252 IgG_Z-score-_COVID-19_patients,362 IgM_Z-score-_COVID-19_patients,252 IgM_Z-score-_COVID-19_patients,362 abEscape,308 artic,145 articV4,145 articV4_1,158 bloomEscMabAvg,312 bloomEscMax,318 bloomEscSerumAvg,313 bloomEscTop,316 bpmIggCovidSum,261 bpmIggCovidSum,371 bpmIgmCovidSum,261 bpmIgmCovidSum,371 cas13Crispr,430 contacts,358 epitopes,43 escape,315 kimRnaMod,192 kimTranscripts,409 mccoy,308 ncbiGeneBGP,130 ncbiProducts,146 pbm,261 pbm,371 pbmShanghai,244 phyloGenes,406 poranHla1,219 poranHla2,219 rapid,116 rapid,299 rappuoli,315 rosettaMhc,227 rosettaMhc,238 strainCons119way,382 strainCons44way,330 swift,228 transcriptome,415 unipCov2AliSwissprot,360 unipCov2Chain,590 unipCov2DisulfBond,586 unipCov2Domain,585 unipCov2Interest,266 unipCov2LocCytopl,585 unipCov2LocExtra,585 unipCov2LocSignal,586 unipCov2LocTransMemb,586 unipCov2Modif,589 unipCov2Mut,586 unipCov2Other,586 unipCov2Repeat,584 unipCov2Struct,588 varskip,151 rank rosettaMhc,289 rao epitopes,308 icshape,188 rapid cd8escape,66 epitopes,176 rapid,1 rapid,4 rapid,23 rapid,189 rapid,347 rapid,363 variantMuts,1373 rapid.bb rapid,312 rapidly nextstrainFreq,278 nextstrainSamples,930 sarsCov2Phylo,880 sarsCov2PhyloPub,986 rappuoli abEscape,12 abEscape,187 abEscape,528 abEscape,639 bloomEscMabAvg,191 bloomEscMabAvg,532 bloomEscMabAvg,643 bloomEscMax,197 bloomEscMax,538 bloomEscMax,649 bloomEscSerumAvg,192 bloomEscSerumAvg,533 bloomEscSerumAvg,644 bloomEscTop,195 bloomEscTop,536 bloomEscTop,647 escape,194 escape,535 escape,646 mccoy,187 mccoy,528 mccoy,639 rappuoli,1 rappuoli,4 rappuoli,194 rappuoli,535 rappuoli,646 rare cpgIslandExt,57 cpgIslandExt,118 cpgIslandExtUnmasked,60 cpgIslandExtUnmasked,121 cpgIslandSuper,57 cpgIslandSuper,118 sarsCov2Phylo,69 sarsCov2PhyloPub,83 rat strainCons119way,1458 rate cd8escape,67 multiz7way,996 potPathoIndel,77 potPathoIndel,126 potPathoIndel,134 potPathoIndel,201 strainCons119way,1705 strainCons119way,2374 strainCons44way,1300 strainCons44way,1969 rates multiz7way,1021 problematicSites,378 recomb,265 strainCons119way,2399 strainCons44way,1994 ratg13 strainCons44way,1001 rather strainCons119way,2023 strainCons44way,1618 ratio PhyloCSF_smooth,193 PhyloCSF_smooth,461 PhyloCSF_smooth,483 PhyloCSFpower,208 PhyloCSFpower,476 PhyloCSFpower,498 cpgIslandExt,273 cpgIslandExt,349 cpgIslandExt,362 cpgIslandExtUnmasked,276 cpgIslandExtUnmasked,352 cpgIslandExtUnmasked,365 cpgIslandSuper,273 cpgIslandSuper,349 cpgIslandSuper,362 strainCons119way,2045 strainCons44way,1640 rationale nextstrainClade,81 raw Calu3_07hpi,308 IgG_Z-score-_COVID-19_patients,284 IgM_Z-score-_COVID-19_patients,284 ORFs,306 PhyloCSF_smooth,626 Q0_tracks,44 Q0_tracks,807 Q1_tracks,46 Q1_tracks,809 Q2_tracks,46 Q2_tracks,809 Q3_tracks,46 Q3_tracks,809 Starr_Bloom,200 Starr_Bloom_bind,194 Vero6_05hpi,308 Vero6_24hpi,308 abEscape,652 artic,67 articV4,67 articV4_1,78 bloomEscMabAvg,656 bloomEscMax,662 bloomEscSerumAvg,657 bloomEscTop,660 bpmIggCovidSum,293 bpmIgmCovidSum,293 cas13Crispr,352 contacts,280 escape,659 galaxyEna,14 galaxyEna,46 galaxyEna,809 galaxyEnaQ0Ba-1,42 galaxyEnaQ0Ba-1,805 galaxyEnaQ0Ba-1-1,42 galaxyEnaQ0Ba-1-1,805 galaxyEnaQ0Ba-1-1-11,42 galaxyEnaQ0Ba-1-1-11,805 galaxyEnaQ0Ba-1-17,42 galaxyEnaQ0Ba-1-17,805 galaxyEnaQ0Ba-2,42 galaxyEnaQ0Ba-2,805 galaxyEnaQ1Ay-4,42 galaxyEnaQ1Ay-4,805 galaxyEnaQ1Ay-4-2,42 galaxyEnaQ1Ay-4-2,805 galaxyEnaQ1Ay-4-2-2,42 galaxyEnaQ1Ay-4-2-2,805 galaxyEnaQ1Ay-43,42 galaxyEnaQ1Ay-43,805 galaxyEnaQ1Ba-1-17,42 galaxyEnaQ1Ba-1-17,805 galaxyEnaQ2Ay-120,42 galaxyEnaQ2Ay-120,805 galaxyEnaQ2Ay-122,42 galaxyEnaQ2Ay-122,805 galaxyEnaQ2Ay-4,42 galaxyEnaQ2Ay-4,805 galaxyEnaQ2Ay-5,42 galaxyEnaQ2Ay-5,805 galaxyEnaQ2Ay-6,42 galaxyEnaQ2Ay-6,805 galaxyEnaQ3Ay-4,42 galaxyEnaQ3Ay-4,805 galaxyEnaQ3Ay-5,42 galaxyEnaQ3Ay-5,805 galaxyEnaQ3Ay-9,42 galaxyEnaQ3Ay-9,805 galaxyEnaQ3B-1-1-7,42 galaxyEnaQ3B-1-1-7,805 galaxyEnaQ3B-1-617-2,42 galaxyEnaQ3B-1-617-2,805 kimRnaMod,114 kimTranscripts,331 mccoy,652 microdel,70 microdel,114 microdel,140 microdel,241 microdel,266 ncbiGeneBGP,42 ncbiProducts,58 pbm,9 pbm,293 pbmShanghai,410 phyloGenes,328 poranHla1,141 poranHla2,141 pyle,266 rapid,221 rappuoli,659 spikeMuts,296 strainCons119way,2157 strainCons44way,1752 swift,150 transcriptome,337 unipCov2AliSwissprot,263 unipCov2Chain,493 unipCov2DisulfBond,489 unipCov2Domain,488 unipCov2Interest,169 unipCov2LocCytopl,488 unipCov2LocExtra,488 unipCov2LocSignal,489 unipCov2LocTransMemb,489 unipCov2Modif,492 unipCov2Mut,489 unipCov2Other,489 unipCov2Repeat,487 unipCov2Struct,491 varskip,73 weizmanOrfs,314 raw.githubusercontent.com problematicSites,493 rbd A_bind_avg,5 A_expr_avg_Expression,5 C_bind_avg,5 C_expr_avg_Expression,5 D_bind_avg,5 D_expr_avg_Expression,5 E_bind_avg,5 E_expr_avg_Expression,5 F_bind_avg,5 F_expr_avg_Expression,5 G_bind_avg,5 G_expr_avg_Expression,5 H_bind_avg,5 H_expr_avg_Expression,5 I_bind_avg,5 I_expr_avg_Expression,5 K_bind_avg,5 K_expr_avg_Expression,5 L_bind_avg,5 L_expr_avg_Expression,5 M_bind_avg,5 M_expr_avg_Expression,5 N_bind_avg,5 N_expr_avg_Expression,5 P_bind_avg,5 P_expr_avg_Expression,5 Q_bind_avg,5 Q_expr_avg_Expression,5 R_bind_avg,5 R_expr_avg_Expression,5 S_bind_avg,5 S_expr_avg_Expression,5 Starr_Bloom,1 Starr_Bloom,5 Starr_Bloom,62 Starr_Bloom,107 Starr_Bloom_bind,1 Starr_Bloom_bind,5 Starr_Bloom_bind,59 Starr_Bloom_bind,102 T_bind_avg,5 T_expr_avg_Expression,5 V_bind_avg,5 V_expr_avg_Expression,5 W_bind_avg,5 W_expr_avg_Expression,5 Y_bind_avg,5 Y_expr_avg_Expression,5 abEscape,45 abEscape,81 abEscape,172 bloomEscMabAvg,49 bloomEscMabAvg,85 bloomEscMabAvg,176 bloomEscMax,55 bloomEscMax,91 bloomEscMax,182 bloomEscSerumAvg,50 bloomEscSerumAvg,86 bloomEscSerumAvg,177 bloomEscTop,53 bloomEscTop,89 bloomEscTop,180 escape,6 escape,52 escape,88 escape,179 mccoy,45 mccoy,81 mccoy,172 rappuoli,52 rappuoli,88 rappuoli,179 spikeMuts,201 rbd-mutation bloomEscMabAvg,7 bloomEscMax,7 bloomEscSerumAvg,7 bloomEscTop,8 bloomEscTotal,7 spikeMuts,195 rc multiz7way,1256 pyle,284 pyle,313 strainCons119way,2634 strainCons44way,2229 rcr3022 rCR3022Max,2 rCR3022Max,9 rCR3022Total,2 rCR3022Total,9 rdrp primers,211 re Q0_tracks,1036 Q1_tracks,1038 Q2_tracks,1038 Q3_tracks,1038 galaxyEna,1038 galaxyEnaQ0Ba-1,1034 galaxyEnaQ0Ba-1-1,1034 galaxyEnaQ0Ba-1-1-11,1034 galaxyEnaQ0Ba-1-17,1034 galaxyEnaQ0Ba-2,1034 galaxyEnaQ1Ay-4,1034 galaxyEnaQ1Ay-4-2,1034 galaxyEnaQ1Ay-4-2-2,1034 galaxyEnaQ1Ay-43,1034 galaxyEnaQ1Ba-1-17,1034 galaxyEnaQ2Ay-120,1034 galaxyEnaQ2Ay-122,1034 galaxyEnaQ2Ay-4,1034 galaxyEnaQ2Ay-5,1034 galaxyEnaQ2Ay-6,1034 galaxyEnaQ3Ay-4,1034 galaxyEnaQ3Ay-5,1034 galaxyEnaQ3Ay-9,1034 galaxyEnaQ3B-1-1-7,1034 galaxyEnaQ3B-1-617-2,1034 re-purposed icshape,225 re-rooted sarsCov2Phylo,669 sarsCov2PhyloPub,693 reached sarsCov2Phylo,545 sarsCov2PhyloPub,570 reaction rapid,69 rapid,87 reactions primers,176 rapid,55 reactive M1_library,5 M2_library,5 targets,4 targets,24 targets,237 reactivity SHAPE,2 SHAPE,4 icshape,16 pyle,78 pyle,107 pyle,171 read Calu3_07hpi,278 ORFs,276 Q0_tracks,857 Q1_tracks,859 Q2_tracks,859 Q3_tracks,859 Vero6_05hpi,278 Vero6_24hpi,278 galaxyEna,859 galaxyEnaQ0Ba-1,855 galaxyEnaQ0Ba-1-1,855 galaxyEnaQ0Ba-1-1-11,855 galaxyEnaQ0Ba-1-17,855 galaxyEnaQ0Ba-2,855 galaxyEnaQ1Ay-4,855 galaxyEnaQ1Ay-4-2,855 galaxyEnaQ1Ay-4-2-2,855 galaxyEnaQ1Ay-43,855 galaxyEnaQ1Ba-1-17,855 galaxyEnaQ2Ay-120,855 galaxyEnaQ2Ay-122,855 galaxyEnaQ2Ay-4,855 galaxyEnaQ2Ay-5,855 galaxyEnaQ2Ay-6,855 galaxyEnaQ3Ay-4,855 galaxyEnaQ3Ay-5,855 galaxyEnaQ3Ay-9,855 galaxyEnaQ3B-1-1-7,855 galaxyEnaQ3B-1-617-2,855 gap,94 kimTranscripts,183 kimTranscripts,229 weizmanOrfs,284 reading Calu3_07hpi,17 ORFs,15 Vero6_05hpi,17 Vero6_24hpi,17 multiz7way,470 multiz7way,486 multiz7way,503 multiz7way,529 rosettaMhc,254 strainCons119way,820 strainCons119way,836 strainCons119way,853 strainCons119way,879 strainCons44way,768 strainCons44way,784 strainCons44way,801 strainCons44way,827 weizmanOrfs,23 reads Q0_tracks,860 Q1_tracks,862 Q2_tracks,862 Q3_tracks,862 galaxyEna,862 galaxyEnaQ0Ba-1,858 galaxyEnaQ0Ba-1-1,858 galaxyEnaQ0Ba-1-1-11,858 galaxyEnaQ0Ba-1-17,858 galaxyEnaQ0Ba-2,858 galaxyEnaQ1Ay-4,858 galaxyEnaQ1Ay-4-2,858 galaxyEnaQ1Ay-4-2-2,858 galaxyEnaQ1Ay-43,858 galaxyEnaQ1Ba-1-17,858 galaxyEnaQ2Ay-120,858 galaxyEnaQ2Ay-122,858 galaxyEnaQ2Ay-4,858 galaxyEnaQ2Ay-5,858 galaxyEnaQ2Ay-6,858 galaxyEnaQ3Ay-4,858 galaxyEnaQ3Ay-5,858 galaxyEnaQ3Ay-9,858 galaxyEnaQ3B-1-1-7,858 galaxyEnaQ3B-1-617-2,858 kimIvtCov,98 kimTranscripts,177 kimTranscripts,217 kimTranscripts,226 kimTranscripts,266 kimTranscripts,274 microdel,71 microdel,88 microdel,104 microdel,115 microdel,131 microdel,242 microdel,267 problematicSites,332 ready-to-use Q0_tracks,52 Q0_tracks,1340 Q1_tracks,54 Q1_tracks,1342 Q2_tracks,54 Q2_tracks,1342 Q3_tracks,54 Q3_tracks,1342 galaxyEna,54 galaxyEna,1342 galaxyEnaQ0Ba-1,50 galaxyEnaQ0Ba-1,1338 galaxyEnaQ0Ba-1-1,50 galaxyEnaQ0Ba-1-1,1338 galaxyEnaQ0Ba-1-1-11,50 galaxyEnaQ0Ba-1-1-11,1338 galaxyEnaQ0Ba-1-17,50 galaxyEnaQ0Ba-1-17,1338 galaxyEnaQ0Ba-2,50 galaxyEnaQ0Ba-2,1338 galaxyEnaQ1Ay-4,50 galaxyEnaQ1Ay-4,1338 galaxyEnaQ1Ay-4-2,50 galaxyEnaQ1Ay-4-2,1338 galaxyEnaQ1Ay-4-2-2,50 galaxyEnaQ1Ay-4-2-2,1338 galaxyEnaQ1Ay-43,50 galaxyEnaQ1Ay-43,1338 galaxyEnaQ1Ba-1-17,50 galaxyEnaQ1Ba-1-17,1338 galaxyEnaQ2Ay-120,50 galaxyEnaQ2Ay-120,1338 galaxyEnaQ2Ay-122,50 galaxyEnaQ2Ay-122,1338 galaxyEnaQ2Ay-4,50 galaxyEnaQ2Ay-4,1338 galaxyEnaQ2Ay-5,50 galaxyEnaQ2Ay-5,1338 galaxyEnaQ2Ay-6,50 galaxyEnaQ2Ay-6,1338 galaxyEnaQ3Ay-4,50 galaxyEnaQ3Ay-4,1338 galaxyEnaQ3Ay-5,50 galaxyEnaQ3Ay-5,1338 galaxyEnaQ3Ay-9,50 galaxyEnaQ3Ay-9,1338 galaxyEnaQ3B-1-1-7,50 galaxyEnaQ3B-1-1-7,1338 galaxyEnaQ3B-1-617-2,50 galaxyEnaQ3B-1-617-2,1338 real-time nextstrainClade,261 nextstrainFreq,396 nextstrainGene,210 nextstrainParsimony,463 nextstrainSamples,1016 primers,268 sarsCov2PhyloPub,1244 realistic rosettaMhc,76 reanalysis Q0_tracks,41 Q0_tracks,108 Q0_tracks,141 Q0_tracks,176 Q1_tracks,43 Q1_tracks,110 Q1_tracks,143 Q1_tracks,178 Q2_tracks,43 Q2_tracks,110 Q2_tracks,143 Q2_tracks,178 Q3_tracks,43 Q3_tracks,110 Q3_tracks,143 Q3_tracks,178 galaxyEna,43 galaxyEna,110 galaxyEna,143 galaxyEna,178 galaxyEnaQ0Ba-1,39 galaxyEnaQ0Ba-1,106 galaxyEnaQ0Ba-1,139 galaxyEnaQ0Ba-1,174 galaxyEnaQ0Ba-1-1,39 galaxyEnaQ0Ba-1-1,106 galaxyEnaQ0Ba-1-1,139 galaxyEnaQ0Ba-1-1,174 galaxyEnaQ0Ba-1-1-11,39 galaxyEnaQ0Ba-1-1-11,106 galaxyEnaQ0Ba-1-1-11,139 galaxyEnaQ0Ba-1-1-11,174 galaxyEnaQ0Ba-1-17,39 galaxyEnaQ0Ba-1-17,106 galaxyEnaQ0Ba-1-17,139 galaxyEnaQ0Ba-1-17,174 galaxyEnaQ0Ba-2,39 galaxyEnaQ0Ba-2,106 galaxyEnaQ0Ba-2,139 galaxyEnaQ0Ba-2,174 galaxyEnaQ1Ay-4,39 galaxyEnaQ1Ay-4,106 galaxyEnaQ1Ay-4,139 galaxyEnaQ1Ay-4,174 galaxyEnaQ1Ay-4-2,39 galaxyEnaQ1Ay-4-2,106 galaxyEnaQ1Ay-4-2,139 galaxyEnaQ1Ay-4-2,174 galaxyEnaQ1Ay-4-2-2,39 galaxyEnaQ1Ay-4-2-2,106 galaxyEnaQ1Ay-4-2-2,139 galaxyEnaQ1Ay-4-2-2,174 galaxyEnaQ1Ay-43,39 galaxyEnaQ1Ay-43,106 galaxyEnaQ1Ay-43,139 galaxyEnaQ1Ay-43,174 galaxyEnaQ1Ba-1-17,39 galaxyEnaQ1Ba-1-17,106 galaxyEnaQ1Ba-1-17,139 galaxyEnaQ1Ba-1-17,174 galaxyEnaQ2Ay-120,39 galaxyEnaQ2Ay-120,106 galaxyEnaQ2Ay-120,139 galaxyEnaQ2Ay-120,174 galaxyEnaQ2Ay-122,39 galaxyEnaQ2Ay-122,106 galaxyEnaQ2Ay-122,139 galaxyEnaQ2Ay-122,174 galaxyEnaQ2Ay-4,39 galaxyEnaQ2Ay-4,106 galaxyEnaQ2Ay-4,139 galaxyEnaQ2Ay-4,174 galaxyEnaQ2Ay-5,39 galaxyEnaQ2Ay-5,106 galaxyEnaQ2Ay-5,139 galaxyEnaQ2Ay-5,174 galaxyEnaQ2Ay-6,39 galaxyEnaQ2Ay-6,106 galaxyEnaQ2Ay-6,139 galaxyEnaQ2Ay-6,174 galaxyEnaQ3Ay-4,39 galaxyEnaQ3Ay-4,106 galaxyEnaQ3Ay-4,139 galaxyEnaQ3Ay-4,174 galaxyEnaQ3Ay-5,39 galaxyEnaQ3Ay-5,106 galaxyEnaQ3Ay-5,139 galaxyEnaQ3Ay-5,174 galaxyEnaQ3Ay-9,39 galaxyEnaQ3Ay-9,106 galaxyEnaQ3Ay-9,139 galaxyEnaQ3Ay-9,174 galaxyEnaQ3B-1-1-7,39 galaxyEnaQ3B-1-1-7,106 galaxyEnaQ3B-1-1-7,139 galaxyEnaQ3B-1-1-7,174 galaxyEnaQ3B-1-617-2,39 galaxyEnaQ3B-1-617-2,106 galaxyEnaQ3B-1-617-2,139 galaxyEnaQ3B-1-617-2,174 rearranged IgG_Z-score-_COVID-19_patients,211 IgM_Z-score-_COVID-19_patients,211 bpmIggCovidSum,220 bpmIgmCovidSum,220 pbm,220 pbmShanghai,367 rearrangement multiz7way,1142 strainCons119way,2520 strainCons44way,2115 reason cpgIslandExt,136 cpgIslandExtUnmasked,139 cpgIslandSuper,136 reasons PhyloCSF_smooth,297 PhyloCSFpower,312 problematicSites,103 rebuilding Q0_tracks,1098 Q1_tracks,1100 Q2_tracks,1100 Q3_tracks,1100 galaxyEna,1100 galaxyEnaQ0Ba-1,1096 galaxyEnaQ0Ba-1-1,1096 galaxyEnaQ0Ba-1-1-11,1096 galaxyEnaQ0Ba-1-17,1096 galaxyEnaQ0Ba-2,1096 galaxyEnaQ1Ay-4,1096 galaxyEnaQ1Ay-4-2,1096 galaxyEnaQ1Ay-4-2-2,1096 galaxyEnaQ1Ay-43,1096 galaxyEnaQ1Ba-1-17,1096 galaxyEnaQ2Ay-120,1096 galaxyEnaQ2Ay-122,1096 galaxyEnaQ2Ay-4,1096 galaxyEnaQ2Ay-5,1096 galaxyEnaQ2Ay-6,1096 galaxyEnaQ3Ay-4,1096 galaxyEnaQ3Ay-5,1096 galaxyEnaQ3Ay-9,1096 galaxyEnaQ3B-1-1-7,1096 galaxyEnaQ3B-1-617-2,1096 rec nextstrainSamplesRb,1 recalculated Q0_tracks,1051 Q1_tracks,1053 Q2_tracks,1053 Q3_tracks,1053 galaxyEna,1053 galaxyEnaQ0Ba-1,1049 galaxyEnaQ0Ba-1-1,1049 galaxyEnaQ0Ba-1-1-11,1049 galaxyEnaQ0Ba-1-17,1049 galaxyEnaQ0Ba-2,1049 galaxyEnaQ1Ay-4,1049 galaxyEnaQ1Ay-4-2,1049 galaxyEnaQ1Ay-4-2-2,1049 galaxyEnaQ1Ay-43,1049 galaxyEnaQ1Ba-1-17,1049 galaxyEnaQ2Ay-120,1049 galaxyEnaQ2Ay-122,1049 galaxyEnaQ2Ay-4,1049 galaxyEnaQ2Ay-5,1049 galaxyEnaQ2Ay-6,1049 galaxyEnaQ3Ay-4,1049 galaxyEnaQ3Ay-5,1049 galaxyEnaQ3Ay-9,1049 galaxyEnaQ3B-1-1-7,1049 galaxyEnaQ3B-1-617-2,1049 received pbmShanghai,360 recent Q0_tracks,345 Q1_tracks,347 Q2_tracks,347 Q3_tracks,347 epitopes,173 galaxyEna,347 galaxyEnaQ0Ba-1,343 galaxyEnaQ0Ba-1-1,343 galaxyEnaQ0Ba-1-1-11,343 galaxyEnaQ0Ba-1-17,343 galaxyEnaQ0Ba-2,343 galaxyEnaQ1Ay-4,343 galaxyEnaQ1Ay-4-2,343 galaxyEnaQ1Ay-4-2-2,343 galaxyEnaQ1Ay-43,343 galaxyEnaQ1Ba-1-17,343 galaxyEnaQ2Ay-120,343 galaxyEnaQ2Ay-122,343 galaxyEnaQ2Ay-4,343 galaxyEnaQ2Ay-5,343 galaxyEnaQ2Ay-6,343 galaxyEnaQ3Ay-4,343 galaxyEnaQ3Ay-5,343 galaxyEnaQ3Ay-9,343 galaxyEnaQ3B-1-1-7,343 galaxyEnaQ3B-1-617-2,343 spikeMuts,204 receptor Starr_Bloom,265 Starr_Bloom_bind,259 abEscape,42 abEscape,169 bloomEscMabAvg,46 bloomEscMabAvg,173 bloomEscMax,52 bloomEscMax,179 bloomEscSerumAvg,47 bloomEscSerumAvg,174 bloomEscTop,50 bloomEscTop,177 escape,49 escape,176 mccoy,42 mccoy,169 rappuoli,49 rappuoli,176 spikeMuts,198 receptor-binding abEscape,711 abEscape,755 bloomEscMabAvg,715 bloomEscMabAvg,759 bloomEscMax,721 bloomEscMax,765 bloomEscSerumAvg,716 bloomEscSerumAvg,760 bloomEscTop,719 bloomEscTop,763 escape,718 escape,762 mccoy,711 mccoy,755 rappuoli,718 rappuoli,762 reclassified variantMuts,176 recoding vaccines,585 recognition abEscape,715 abEscape,760 bloomEscMabAvg,719 bloomEscMabAvg,764 bloomEscMax,725 bloomEscMax,770 bloomEscSerumAvg,720 bloomEscSerumAvg,765 bloomEscTop,723 bloomEscTop,768 epitopes,299 escape,722 escape,767 mccoy,715 mccoy,760 rappuoli,722 rappuoli,767 rosettaMhc,128 recognizable rnaStructRangan,31 recomb Kim_RNAs,2 Kim_TRS_sgmRNAs,2 Kim_non-TRS_sgmRNAs,2 kimTranscripts,153 kimTranscripts,196 kimTranscripts,280 kimTranscripts,305 recomb,1 recombinant recomb,123 recomb,193 recombinated recomb,55 recombination kimTranscripts,52 kimTranscripts,138 kimTranscripts,157 kimTranscripts,200 kimTranscripts,320 problematicSites,28 recomb,3 recomb,17 recomb,91 recomb,95 recomb,102 recomb,154 recomb,350 transcriptome,44 transcriptome,138 transcriptome,187 recombinations recomb,72 recombined Kim_RNAs,7 Kim_TRS_sgmRNAs,7 Kim_non-TRS_sgmRNAs,5 kimTranscripts,134 kimTranscripts,239 kimTranscripts,299 recombining transcriptome,173 recommendations phyloGenes,51 problematicSites,446 recommended problematicSites,10 problematicSites,143 problematicSites,166 problematicSites,380 problematicSites,470 problematicSitesCaution,7 problematicSitesMask,7 recon poranHla1,4 poranHla1,51 poranHla1,289 poranHla2,4 poranHla2,51 poranHla2,289 reconstruct sarsCov2Phylo,750 reconstructed vaccines,40 reconstructedbnt162b2 vaccines,298 record ncbiProducts,54 unipCov2AliSwissprot,122 unipCov2Chain,307 unipCov2DisulfBond,303 unipCov2Domain,302 unipCov2LocCytopl,302 unipCov2LocExtra,302 unipCov2LocSignal,303 unipCov2LocTransMemb,303 unipCov2Modif,306 unipCov2Mut,303 unipCov2Other,303 unipCov2Repeat,301 unipCov2Struct,305 recorded treangen,251 recovered pyle,127 rectangles IgG_Z-score-_COVID-19_patients,112 IgM_Z-score-_COVID-19_patients,112 bpmIggCovidSum,121 bpmIgmCovidSum,121 pbm,121 pbmShanghai,178 recurrent nextstrainParsimony,243 nextstrainSamples,227 nextstrainSamplesRb,3 red IgG_Z-score-_COVID-19_patients,160 IgM_Z-score-_COVID-19_patients,160 abEscape,417 abEscape,463 bloomEscMabAvg,421 bloomEscMabAvg,467 bloomEscMax,427 bloomEscMax,473 bloomEscSerumAvg,422 bloomEscSerumAvg,468 bloomEscTop,425 bloomEscTop,471 bpmIggCovidSum,169 bpmIgmCovidSum,169 epitopes,55 escape,424 escape,470 mccoy,417 mccoy,463 multiz7way,174 pbm,169 rappuoli,424 rappuoli,470 sarsCov2Phylo,418 sarsCov2PhyloPub,447 strainCons119way,354 strainCons119way,523 strainCons44way,302 strainCons44way,471 strainName119way,8 strainName44way,13 vaccines,145 redefined Q0_tracks,308 Q1_tracks,310 Q2_tracks,310 Q3_tracks,310 galaxyEna,310 galaxyEnaQ0Ba-1,306 galaxyEnaQ0Ba-1-1,306 galaxyEnaQ0Ba-1-1-11,306 galaxyEnaQ0Ba-1-17,306 galaxyEnaQ0Ba-2,306 galaxyEnaQ1Ay-4,306 galaxyEnaQ1Ay-4-2,306 galaxyEnaQ1Ay-4-2-2,306 galaxyEnaQ1Ay-43,306 galaxyEnaQ1Ba-1-17,306 galaxyEnaQ2Ay-120,306 galaxyEnaQ2Ay-122,306 galaxyEnaQ2Ay-4,306 galaxyEnaQ2Ay-5,306 galaxyEnaQ2Ay-6,306 galaxyEnaQ3Ay-4,306 galaxyEnaQ3Ay-5,306 galaxyEnaQ3Ay-9,306 galaxyEnaQ3B-1-1-7,306 galaxyEnaQ3B-1-617-2,306 redidentified spikeMuts,187 redistribution nextstrainSamples,684 redmost spikeMuts,203 reduced sarsCov2PhyloPub,711 rees-spear abEscape,226 bloomEscMabAvg,230 bloomEscMax,236 bloomEscSerumAvg,231 bloomEscTop,234 escape,233 mccoy,226 rappuoli,233 ref nextstrainSamples,868 refer Calu3_07hpi,329 IgG_Z-score-_COVID-19_patients,385 IgM_Z-score-_COVID-19_patients,385 ORFs,327 PhyloCSF_smooth,654 Starr_Bloom,221 Starr_Bloom_bind,215 Vero6_05hpi,329 Vero6_24hpi,329 abEscape,673 artic,167 articV4,167 articV4_1,180 bloomEscMabAvg,677 bloomEscMax,683 bloomEscSerumAvg,678 bloomEscTop,681 bpmIggCovidSum,394 bpmIgmCovidSum,394 cas13Crispr,452 contacts,380 escape,680 genscan,144 icshape,164 kimRnaMod,214 kimTranscripts,432 mccoy,673 microdel,171 ncbiGeneBGP,147 ncbiProducts,163 nextstrainFreq,252 pbm,394 pbmShanghai,477 phyloGenes,429 poranHla1,136 poranHla1,242 poranHla2,136 poranHla2,242 rapid,321 rappuoli,680 resist,124 resistPred,216 rosettaMhc,351 spikeMuts,339 swift,250 transcriptome,438 unipCov2AliSwissprot,384 unipCov2Chain,614 unipCov2DisulfBond,610 unipCov2Domain,609 unipCov2LocCytopl,609 unipCov2LocExtra,609 unipCov2LocSignal,610 unipCov2LocTransMemb,610 unipCov2Modif,613 unipCov2Mut,610 unipCov2Other,610 unipCov2Repeat,608 unipCov2Struct,612 varskip,173 weizmanOrfs,335 reference PhyloCSF_smooth,307 PhyloCSFpower,322 addgene,169 addgene,182 cas13Crispr,209 contacts,252 contacts,263 epitopes,85 multiz7way,31 multiz7way,246 multiz7way,575 multiz7way,762 nextstrainClade,96 nextstrainFreq,71 nextstrainParsimony,88 nextstrainSamples,406 nextstrainSamples,440 primers,26 resist,71 rosettaMhc,332 sarsCov2Phylo,410 sarsCov2Phylo,476 sarsCov2Phylo,588 sarsCov2PhyloPub,439 sarsCov2PhyloPub,505 sarsCov2PhyloPub,615 sarsCov2PhyloPub,783 strainCons119way,55 strainCons119way,74 strainCons119way,595 strainCons119way,925 strainCons119way,1522 strainCons44way,52 strainCons44way,543 strainCons44way,873 strainCons44way,1192 swift,67 ucscToRefSeq,23 variantMuts,727 variantMuts,749 variantMuts,837 variantMuts,872 variantMuts,911 referenced rapid,209 references Calu3_07hpi,302 Calu3_07hpi,345 IgG_Z-score-_COVID-19_patients,401 IgM_Z-score-_COVID-19_patients,401 ORFs,300 ORFs,343 PhyloCSF_smooth,702 PhyloCSFpower,670 Q0_tracks,1228 Q1_tracks,1230 Q2_tracks,1230 Q3_tracks,1230 Starr_Bloom,237 Starr_Bloom_bind,231 Vero6_05hpi,302 Vero6_05hpi,345 Vero6_24hpi,302 Vero6_24hpi,345 abEscape,689 addgene,249 addgene,250 augustusGene,285 bloomEscMabAvg,693 bloomEscMax,699 bloomEscSerumAvg,694 bloomEscTop,697 bpmIggCovidSum,410 bpmIgmCovidSum,410 cas13Crispr,489 cd8escape,186 cpgIslandExt,603 cpgIslandExtUnmasked,606 cpgIslandSuper,603 epitopes,317 escape,696 galaxyEna,1230 galaxyEnaQ0Ba-1,1226 galaxyEnaQ0Ba-1-1,1226 galaxyEnaQ0Ba-1-1-11,1226 galaxyEnaQ0Ba-1-17,1226 galaxyEnaQ0Ba-2,1226 galaxyEnaQ1Ay-4,1226 galaxyEnaQ1Ay-4-2,1226 galaxyEnaQ1Ay-4-2-2,1226 galaxyEnaQ1Ay-43,1226 galaxyEnaQ1Ba-1-17,1226 galaxyEnaQ2Ay-120,1226 galaxyEnaQ2Ay-122,1226 galaxyEnaQ2Ay-4,1226 galaxyEnaQ2Ay-5,1226 galaxyEnaQ2Ay-6,1226 galaxyEnaQ3Ay-4,1226 galaxyEnaQ3Ay-5,1226 galaxyEnaQ3Ay-9,1226 galaxyEnaQ3B-1-1-7,1226 galaxyEnaQ3B-1-617-2,1226 genscan,152 genscan,179 gordon2,253 icshape,180 iedb,96 kimIvtCov,172 kimNp,116 kimRnaMod,241 kimTranscripts,459 mccoy,689 microdel,268 multiz7way,930 nextstrainClade,241 nextstrainFreq,376 nextstrainGene,190 nextstrainParsimony,443 nextstrainSamples,996 pbm,410 pbmShanghai,493 pdb,132 phyloGenes,491 pond,228 poranHla1,258 poranHla2,258 potPathoIndel,204 problematicSites,537 pyle,277 rapid,337 rappuoli,696 recomb,321 rfam,173 rnaStructRangan,101 rosettaMhc,339 rosettaMhc,359 rosettaMhc,391 sarsCov2Phylo,933 sarsCov2PhyloPub,1038 simpleRepeat,73 spikeMuts,386 strainCons119way,2308 strainCons44way,1903 targets,229 transcriptome,465 treangen,290 unipCov2AliSwissprot,440 unipCov2Chain,669 unipCov2DisulfBond,665 unipCov2Domain,664 unipCov2Interest,323 unipCov2LocCytopl,664 unipCov2LocExtra,664 unipCov2LocSignal,665 unipCov2LocTransMemb,665 unipCov2Modif,668 unipCov2Mut,665 unipCov2Other,665 unipCov2Repeat,663 unipCov2Struct,667 vaccines,92 vaccines,202 vaccines,490 variantMuts,1240 weizmanOrfs,308 weizmanOrfs,351 windowmaskerSdust,89 referred phyloGenes,116 phyloGenes,142 phyloGenes,215 phyloGenes,238 phyloGenes,268 phyloGenes,319 rapid,29 refined rfam,97 reflect strainCons119way,1880 strainCons44way,1475 variantMuts,1095 reflects Q0_tracks,428 Q1_tracks,430 Q2_tracks,430 Q3_tracks,430 epitopes,288 galaxyEna,430 galaxyEnaQ0Ba-1,426 galaxyEnaQ0Ba-1-1,426 galaxyEnaQ0Ba-1-1-11,426 galaxyEnaQ0Ba-1-17,426 galaxyEnaQ0Ba-2,426 galaxyEnaQ1Ay-4,426 galaxyEnaQ1Ay-4-2,426 galaxyEnaQ1Ay-4-2-2,426 galaxyEnaQ1Ay-43,426 galaxyEnaQ1Ba-1-17,426 galaxyEnaQ2Ay-120,426 galaxyEnaQ2Ay-122,426 galaxyEnaQ2Ay-4,426 galaxyEnaQ2Ay-5,426 galaxyEnaQ2Ay-6,426 galaxyEnaQ3Ay-4,426 galaxyEnaQ3Ay-5,426 galaxyEnaQ3Ay-9,426 galaxyEnaQ3B-1-1-7,426 galaxyEnaQ3B-1-617-2,426 reformatted problematicSites,473 refseq sarsCov2Phylo,595 sarsCov2PhyloPub,622 ucscToRefSeq,1 ucscToRefSeq,3 ucscToRefSeq,26 regarding Q0_tracks,1155 Q1_tracks,1157 Q2_tracks,1157 Q3_tracks,1157 galaxyEna,1157 galaxyEnaQ0Ba-1,1153 galaxyEnaQ0Ba-1-1,1153 galaxyEnaQ0Ba-1-1-11,1153 galaxyEnaQ0Ba-1-17,1153 galaxyEnaQ0Ba-2,1153 galaxyEnaQ1Ay-4,1153 galaxyEnaQ1Ay-4-2,1153 galaxyEnaQ1Ay-4-2-2,1153 galaxyEnaQ1Ay-43,1153 galaxyEnaQ1Ba-1-17,1153 galaxyEnaQ2Ay-120,1153 galaxyEnaQ2Ay-122,1153 galaxyEnaQ2Ay-4,1153 galaxyEnaQ2Ay-5,1153 galaxyEnaQ2Ay-6,1153 galaxyEnaQ3Ay-4,1153 galaxyEnaQ3Ay-5,1153 galaxyEnaQ3Ay-9,1153 galaxyEnaQ3B-1-1-7,1153 galaxyEnaQ3B-1-617-2,1153 spikeMuts,159 regeneron unipCov2AliSwissprot,428 unipCov2Interest,311 region PhyloCSF_smooth,301 PhyloCSFpower,316 addgene,193 cpgIslandExt,129 cpgIslandExtUnmasked,132 cpgIslandSuper,129 multiz7way,184 multiz7way,206 multiz7way,229 multiz7way,243 multiz7way,312 multiz7way,522 multiz7way,556 sarsCov2Phylo,1006 sarsCov2PhyloPub,1126 spikeMuts,200 strainCons119way,533 strainCons119way,555 strainCons119way,578 strainCons119way,592 strainCons119way,763 strainCons119way,872 strainCons119way,906 strainCons44way,481 strainCons44way,503 strainCons44way,526 strainCons44way,540 strainCons44way,711 strainCons44way,820 strainCons44way,854 regions PhyloCSF_smooth,23 PhyloCSF_smooth,36 PhyloCSF_smooth,145 PhyloCSF_smooth,284 PhyloCSF_smooth,328 PhyloCSF_smooth,445 PhyloCSF_smooth,450 PhyloCSF_smooth,720 PhyloCSFpower,38 PhyloCSFpower,51 PhyloCSFpower,160 PhyloCSFpower,299 PhyloCSFpower,343 PhyloCSFpower,460 PhyloCSFpower,465 PhyloCSFpower,690 addgene,115 augustusGene,76 cas13Crispr,35 cpgIslandExt,41 cpgIslandExt,150 cpgIslandExt,182 cpgIslandExtUnmasked,44 cpgIslandExtUnmasked,153 cpgIslandExtUnmasked,185 cpgIslandSuper,41 cpgIslandSuper,150 cpgIslandSuper,182 epitopes,254 epitopes,284 epitopes,294 genscan,48 kimIvtCov,74 multiz7way,152 phyloGenes,511 phyloGenes,534 potPathoIndel,104 potPathoIndel,160 pyle,95 simpleRepeat,39 strainCons119way,501 strainCons119way,1847 strainCons119way,1853 strainCons119way,1945 strainCons119way,1950 strainCons44way,449 strainCons44way,1442 strainCons44way,1448 strainCons44way,1540 strainCons44way,1545 unipCov2Chain,125 unipCov2Chain,187 unipCov2Chain,207 unipCov2Chain,227 unipCov2Chain,243 unipCov2DisulfBond,121 unipCov2DisulfBond,183 unipCov2DisulfBond,203 unipCov2DisulfBond,223 unipCov2DisulfBond,239 unipCov2Domain,120 unipCov2Domain,182 unipCov2Domain,202 unipCov2Domain,222 unipCov2Domain,238 unipCov2Interest,4 unipCov2Interest,19 unipCov2LocCytopl,120 unipCov2LocCytopl,182 unipCov2LocCytopl,202 unipCov2LocCytopl,222 unipCov2LocCytopl,238 unipCov2LocExtra,120 unipCov2LocExtra,182 unipCov2LocExtra,202 unipCov2LocExtra,222 unipCov2LocExtra,238 unipCov2LocSignal,121 unipCov2LocSignal,183 unipCov2LocSignal,203 unipCov2LocSignal,223 unipCov2LocSignal,239 unipCov2LocTransMemb,121 unipCov2LocTransMemb,183 unipCov2LocTransMemb,203 unipCov2LocTransMemb,223 unipCov2LocTransMemb,239 unipCov2Modif,124 unipCov2Modif,186 unipCov2Modif,206 unipCov2Modif,226 unipCov2Modif,242 unipCov2Mut,121 unipCov2Mut,183 unipCov2Mut,203 unipCov2Mut,223 unipCov2Mut,239 unipCov2Other,121 unipCov2Other,183 unipCov2Other,203 unipCov2Other,223 unipCov2Other,239 unipCov2Repeat,119 unipCov2Repeat,181 unipCov2Repeat,201 unipCov2Repeat,221 unipCov2Repeat,237 unipCov2Struct,123 unipCov2Struct,185 unipCov2Struct,205 unipCov2Struct,225 unipCov2Struct,241 register sarsCov2Phylo,809 registered nextstrainSamples,749 sarsCov2Phylo,853 regn10933 REGN10933Max,2 REGN10933Max,9 REGN10933Total,2 REGN10933Total,9 regn10933-regn10987 REGN10933-REGN10987Max,2 REGN10933-REGN10987Max,9 REGN10933-REGN10987Total,2 REGN10933-REGN10987Total,9 regn10987 REGN10987Max,2 REGN10987Max,9 REGN10987Total,2 REGN10987Total,9 regularly sarsCov2Phylo,567 sarsCov2PhyloPub,592 regulation Q0_tracks,243 Q1_tracks,245 Q2_tracks,245 Q3_tracks,245 cpgIslandExt,13 cpgIslandExt,143 cpgIslandExtUnmasked,16 cpgIslandExtUnmasked,146 cpgIslandSuper,13 cpgIslandSuper,143 galaxyEna,245 galaxyEnaQ0Ba-1,241 galaxyEnaQ0Ba-1-1,241 galaxyEnaQ0Ba-1-1-11,241 galaxyEnaQ0Ba-1-17,241 galaxyEnaQ0Ba-2,241 galaxyEnaQ1Ay-4,241 galaxyEnaQ1Ay-4-2,241 galaxyEnaQ1Ay-4-2-2,241 galaxyEnaQ1Ay-43,241 galaxyEnaQ1Ba-1-17,241 galaxyEnaQ2Ay-120,241 galaxyEnaQ2Ay-122,241 galaxyEnaQ2Ay-4,241 galaxyEnaQ2Ay-5,241 galaxyEnaQ2Ay-6,241 galaxyEnaQ3Ay-4,241 galaxyEnaQ3Ay-5,241 galaxyEnaQ3Ay-9,241 galaxyEnaQ3B-1-1-7,241 galaxyEnaQ3B-1-617-2,241 regulatory TRS_sites,4 kimTranscripts,66 pyle,299 transcriptome,58 rejected PhyloCSFrejected,2 PhyloCSFrejected,5 phyloGenes,148 relate multiz7way,75 related augustusGene,242 contacts,225 epitopes,227 kimIvtCov,101 unipCov2Chain,360 unipCov2DisulfBond,356 unipCov2Domain,355 unipCov2LocCytopl,355 unipCov2LocExtra,355 unipCov2LocSignal,356 unipCov2LocTransMemb,356 unipCov2Modif,359 unipCov2Mut,356 unipCov2Other,356 unipCov2Repeat,354 unipCov2Struct,358 variantMuts,184 relating sarsCov2PhyloPub,24 relationship PhyloCSF_smooth,323 PhyloCSFpower,338 relationships problematicSites,21 sarsCov2Phylo,492 sarsCov2PhyloPub,521 relative PhyloCSF_smooth,169 PhyloCSFpower,3 PhyloCSFpower,184 cas13Crispr,263 gap,78 gold,109 kimIvtCov,158 kimRnaMod,89 multiz7way,362 pond,131 problematicSites,190 problematicSites,245 recomb,225 strainCons119way,704 strainCons44way,652 relatively cpgIslandExt,117 cpgIslandExtUnmasked,120 cpgIslandSuper,117 nextstrainParsimony,214 problematicSites,283 recomb,156 release rfam,54 sarsCov2PhyloPub,727 spikeMuts,256 variantMuts,1042 releases sarsCov2PhyloPub,894 relevant addgene,160 addgene,222 nextstrainFreq,347 resistPred,42 spikeMuts,176 reliable problematicSites,48 rely Calu3_07hpi,218 ORFs,216 Vero6_05hpi,218 Vero6_24hpi,218 strainCons119way,1679 strainCons119way,1934 strainCons44way,1274 strainCons44way,1529 weizmanOrfs,224 remain recomb,163 remaining multiz7way,561 strainCons119way,911 strainCons44way,859 remdesivir resist,30 remove rfam,63 removed cas13Crispr,337 cpgIslandExt,331 cpgIslandExtUnmasked,334 cpgIslandSuper,331 nextstrainSamples,451 sarsCov2Phylo,660 sarsCov2PhyloPub,684 ren icshape,200 rename gordon2,225 renamed phyloGenes,459 rendering Q0_tracks,533 Q1_tracks,535 Q2_tracks,535 Q3_tracks,535 galaxyEna,535 galaxyEnaQ0Ba-1,531 galaxyEnaQ0Ba-1-1,531 galaxyEnaQ0Ba-1-1-11,531 galaxyEnaQ0Ba-1-17,531 galaxyEnaQ0Ba-2,531 galaxyEnaQ1Ay-4,531 galaxyEnaQ1Ay-4-2,531 galaxyEnaQ1Ay-4-2-2,531 galaxyEnaQ1Ay-43,531 galaxyEnaQ1Ba-1-17,531 galaxyEnaQ2Ay-120,531 galaxyEnaQ2Ay-122,531 galaxyEnaQ2Ay-4,531 galaxyEnaQ2Ay-5,531 galaxyEnaQ2Ay-6,531 galaxyEnaQ3Ay-4,531 galaxyEnaQ3Ay-5,531 galaxyEnaQ3Ay-9,531 galaxyEnaQ3B-1-1-7,531 galaxyEnaQ3B-1-617-2,531 reorganizing unipCov2AliSwissprot,443 unipCov2Chain,672 unipCov2DisulfBond,668 unipCov2Domain,667 unipCov2Interest,326 unipCov2LocCytopl,667 unipCov2LocExtra,667 unipCov2LocSignal,668 unipCov2LocTransMemb,668 unipCov2Modif,671 unipCov2Mut,668 unipCov2Other,668 unipCov2Repeat,666 unipCov2Struct,670 repeat cpgIslandExt,181 cpgIslandExt,191 cpgIslandExtUnmasked,184 cpgIslandExtUnmasked,194 cpgIslandSuper,181 cpgIslandSuper,191 simpleRepeat,47 repeated unipCov2Chain,245 unipCov2Chain,249 unipCov2DisulfBond,241 unipCov2DisulfBond,245 unipCov2Domain,240 unipCov2Domain,244 unipCov2LocCytopl,240 unipCov2LocCytopl,244 unipCov2LocExtra,240 unipCov2LocExtra,244 unipCov2LocSignal,241 unipCov2LocSignal,245 unipCov2LocTransMemb,241 unipCov2LocTransMemb,245 unipCov2Modif,244 unipCov2Modif,248 unipCov2Mut,241 unipCov2Mut,245 unipCov2Other,241 unipCov2Other,245 unipCov2Repeat,239 unipCov2Repeat,243 unipCov2Struct,243 unipCov2Struct,247 repeats Negative_Selection,18 Positive_Selection,18 Q0_tracks,17 Q1_tracks,19 Q2_tracks,19 Q3_tracks,19 galaxyEna,19 galaxyEnaQ0Ba-1,15 galaxyEnaQ0Ba-1-1,15 galaxyEnaQ0Ba-1-1-11,15 galaxyEnaQ0Ba-1-17,15 galaxyEnaQ0Ba-2,15 galaxyEnaQ1Ay-4,15 galaxyEnaQ1Ay-4-2,15 galaxyEnaQ1Ay-4-2-2,15 galaxyEnaQ1Ay-43,15 galaxyEnaQ1Ba-1-17,15 galaxyEnaQ2Ay-120,15 galaxyEnaQ2Ay-122,15 galaxyEnaQ2Ay-4,15 galaxyEnaQ2Ay-5,15 galaxyEnaQ2Ay-6,15 galaxyEnaQ3Ay-4,15 galaxyEnaQ3Ay-5,15 galaxyEnaQ3Ay-9,15 galaxyEnaQ3B-1-1-7,15 galaxyEnaQ3B-1-617-2,15 microdel,8 nextstrainClade,13 nextstrainFreq,10 nextstrainFreq19A,10 nextstrainFreq19B,10 nextstrainFreq20A,10 nextstrainFreq20B,10 nextstrainFreq20C,10 nextstrainFreq20D,10 nextstrainFreq20F,10 nextstrainFreq20G,10 nextstrainFreq21A_Delta,12 nextstrainFreq21B_Kappa,12 nextstrainFreq21D_Eta,12 nextstrainFreq21E_Theta,12 nextstrainFreq21F_Iota,12 nextstrainFreq21G_Lambda,12 nextstrainFreq21H_Mu,12 nextstrainFreq21I_Delta,12 nextstrainFreq21J_Delta,12 nextstrainFreqAll,10 nextstrainFreqViewAll,10 nextstrainFreqViewNewClades,10 nextstrainParsimony,13 nextstrainSamples,13 nextstrainSamples19A,16 nextstrainSamples19B,16 nextstrainSamples20A,16 nextstrainSamples20B,16 nextstrainSamples20C,16 nextstrainSamples20D,16 nextstrainSamples20F,16 nextstrainSamples20G,16 nextstrainSamples21A_Delta,18 nextstrainSamples21B_Kappa,18 nextstrainSamples21D_Eta,18 nextstrainSamples21E_Theta,18 nextstrainSamples21F_Iota,18 nextstrainSamples21G_Lambda,18 nextstrainSamples21H_Mu,18 nextstrainSamples21I_Delta,18 nextstrainSamples21J_Delta,18 nextstrainSamplesAll,13 nextstrainSamplesRb,16 nextstrainSamplesViewAll,13 nextstrainSamplesViewNewClades,13 pond,15 potPathoIndel,17 recomb,12 resist,14 resistPred,22 sarsCov2Phylo,18 sarsCov2PhyloFull,18 sarsCov2PhyloMinAf001,20 sarsCov2PhyloMinAf01,20 sarsCov2PhyloPub,16 sarsCov2PhyloPubAllFull,18 sarsCov2PhyloPubAllMinAf001,17 sarsCov2PhyloPubAllMinAf01,17 simpleRepeat,2 simpleRepeat,5 simpleRepeat,10 simpleRepeat,17 simpleRepeat,20 simpleRepeat,24 simpleRepeat,34 simpleRepeat,77 spikeMuts,13 treangen,14 unipCov2Chain,242 unipCov2DisulfBond,238 unipCov2Domain,237 unipCov2LocCytopl,237 unipCov2LocExtra,237 unipCov2LocSignal,238 unipCov2LocTransMemb,238 unipCov2Modif,241 unipCov2Mut,238 unipCov2Other,238 unipCov2Repeat,1 unipCov2Repeat,3 unipCov2Repeat,236 unipCov2Struct,240 variantAaMutsV2_B_1_1_7,21 variantAaMutsV2_B_1_351,21 variantAaMutsV2_B_1_429,21 variantAaMutsV2_B_1_525,20 variantAaMutsV2_B_1_526,21 variantAaMutsV2_B_1_617_1,21 variantAaMutsV2_B_1_617_2,21 variantAaMutsV2_B_1_621,21 variantAaMutsV2_C_37,21 variantAaMutsV2_P_1,21 variantAaMuts_BA_2,18 variantAaMuts_BA_2_12_1,18 variantAaMuts_BA_2_75,19 variantAaMuts_BA_2_86,18 variantAaMuts_BA_4,19 variantAaMuts_BA_5,19 variantAaMuts_BQ_1,18 variantAaMuts_B_1_1_529,18 variantAaMuts_CH_1_1,18 variantAaMuts_EG_5_1,18 variantAaMuts_HK_3,18 variantAaMuts_JN_1,18 variantAaMuts_XBB,18 variantAaMuts_XBB_1_16,18 variantAaMuts_XBB_1_5,18 variantAaMuts_XBB_1_5_70,18 variantAaMuts_XBB_1_9,18 variantAaMuts_XBB_2_3,18 variantMuts,23 variantNucMutsV2_B_1_1_7,20 variantNucMutsV2_B_1_351,20 variantNucMutsV2_B_1_429,20 variantNucMutsV2_B_1_525,19 variantNucMutsV2_B_1_526,20 variantNucMutsV2_B_1_617_1,20 variantNucMutsV2_B_1_617_2,20 variantNucMutsV2_B_1_621,20 variantNucMutsV2_C_37,20 variantNucMutsV2_P_1,20 variantNucMuts_BA_2,18 variantNucMuts_BA_2_12_1,18 variantNucMuts_BA_2_75,18 variantNucMuts_BA_2_86,18 variantNucMuts_BA_4,19 variantNucMuts_BA_5,19 variantNucMuts_BQ_1,18 variantNucMuts_B_1_1_529,20 variantNucMuts_CH_1_1,18 variantNucMuts_EG_5_1,18 variantNucMuts_HK_3,18 variantNucMuts_JN_1,18 variantNucMuts_XBB,18 variantNucMuts_XBB_1_16,18 variantNucMuts_XBB_1_5,18 variantNucMuts_XBB_1_5_70,18 variantNucMuts_XBB_1_9,18 variantNucMuts_XBB_2_3,18 windowmaskerSdust,11 repeats.bed windowmaskerSdust,73 windowmaskerSdust,75 replaced PhyloCSF_smooth,420 PhyloCSFpower,435 pbmShanghai,234 replaces recomb,199 replicates Calu3_07hpi,130 ORFs,128 Starr_Bloom,189 Starr_Bloom_bind,183 Vero6_05hpi,130 Vero6_24hpi,130 weizmanOrfs,136 replication kimTranscripts,56 transcriptome,48 reported Starr_Bloom,190 Starr_Bloom_bind,184 gordon2,75 kimTranscripts,140 nextstrainFreq,89 nextstrainParsimony,255 poranHla1,62 poranHla2,62 rnaStructRangan,21 targets,207 targets,225 transcriptome,230 treangen,60 reporting Q0_tracks,88 Q0_tracks,179 Q0_tracks,891 Q1_tracks,90 Q1_tracks,181 Q1_tracks,893 Q2_tracks,90 Q2_tracks,181 Q2_tracks,893 Q3_tracks,90 Q3_tracks,181 Q3_tracks,893 galaxyEna,90 galaxyEna,181 galaxyEna,893 galaxyEnaQ0Ba-1,86 galaxyEnaQ0Ba-1,177 galaxyEnaQ0Ba-1,889 galaxyEnaQ0Ba-1-1,86 galaxyEnaQ0Ba-1-1,177 galaxyEnaQ0Ba-1-1,889 galaxyEnaQ0Ba-1-1-11,86 galaxyEnaQ0Ba-1-1-11,177 galaxyEnaQ0Ba-1-1-11,889 galaxyEnaQ0Ba-1-17,86 galaxyEnaQ0Ba-1-17,177 galaxyEnaQ0Ba-1-17,889 galaxyEnaQ0Ba-2,86 galaxyEnaQ0Ba-2,177 galaxyEnaQ0Ba-2,889 galaxyEnaQ1Ay-4,86 galaxyEnaQ1Ay-4,177 galaxyEnaQ1Ay-4,889 galaxyEnaQ1Ay-4-2,86 galaxyEnaQ1Ay-4-2,177 galaxyEnaQ1Ay-4-2,889 galaxyEnaQ1Ay-4-2-2,86 galaxyEnaQ1Ay-4-2-2,177 galaxyEnaQ1Ay-4-2-2,889 galaxyEnaQ1Ay-43,86 galaxyEnaQ1Ay-43,177 galaxyEnaQ1Ay-43,889 galaxyEnaQ1Ba-1-17,86 galaxyEnaQ1Ba-1-17,177 galaxyEnaQ1Ba-1-17,889 galaxyEnaQ2Ay-120,86 galaxyEnaQ2Ay-120,177 galaxyEnaQ2Ay-120,889 galaxyEnaQ2Ay-122,86 galaxyEnaQ2Ay-122,177 galaxyEnaQ2Ay-122,889 galaxyEnaQ2Ay-4,86 galaxyEnaQ2Ay-4,177 galaxyEnaQ2Ay-4,889 galaxyEnaQ2Ay-5,86 galaxyEnaQ2Ay-5,177 galaxyEnaQ2Ay-5,889 galaxyEnaQ2Ay-6,86 galaxyEnaQ2Ay-6,177 galaxyEnaQ2Ay-6,889 galaxyEnaQ3Ay-4,86 galaxyEnaQ3Ay-4,177 galaxyEnaQ3Ay-4,889 galaxyEnaQ3Ay-5,86 galaxyEnaQ3Ay-5,177 galaxyEnaQ3Ay-5,889 galaxyEnaQ3Ay-9,86 galaxyEnaQ3Ay-9,177 galaxyEnaQ3Ay-9,889 galaxyEnaQ3B-1-1-7,86 galaxyEnaQ3B-1-1-7,177 galaxyEnaQ3B-1-1-7,889 galaxyEnaQ3B-1-617-2,86 galaxyEnaQ3B-1-617-2,177 galaxyEnaQ3B-1-617-2,889 gordon2,251 reports Q0_tracks,215 Q0_tracks,899 Q1_tracks,217 Q1_tracks,901 Q2_tracks,217 Q2_tracks,901 Q3_tracks,217 Q3_tracks,901 galaxyEna,217 galaxyEna,901 galaxyEnaQ0Ba-1,213 galaxyEnaQ0Ba-1,897 galaxyEnaQ0Ba-1-1,213 galaxyEnaQ0Ba-1-1,897 galaxyEnaQ0Ba-1-1-11,213 galaxyEnaQ0Ba-1-1-11,897 galaxyEnaQ0Ba-1-17,213 galaxyEnaQ0Ba-1-17,897 galaxyEnaQ0Ba-2,213 galaxyEnaQ0Ba-2,897 galaxyEnaQ1Ay-4,213 galaxyEnaQ1Ay-4,897 galaxyEnaQ1Ay-4-2,213 galaxyEnaQ1Ay-4-2,897 galaxyEnaQ1Ay-4-2-2,213 galaxyEnaQ1Ay-4-2-2,897 galaxyEnaQ1Ay-43,213 galaxyEnaQ1Ay-43,897 galaxyEnaQ1Ba-1-17,213 galaxyEnaQ1Ba-1-17,897 galaxyEnaQ2Ay-120,213 galaxyEnaQ2Ay-120,897 galaxyEnaQ2Ay-122,213 galaxyEnaQ2Ay-122,897 galaxyEnaQ2Ay-4,213 galaxyEnaQ2Ay-4,897 galaxyEnaQ2Ay-5,213 galaxyEnaQ2Ay-5,897 galaxyEnaQ2Ay-6,213 galaxyEnaQ2Ay-6,897 galaxyEnaQ3Ay-4,213 galaxyEnaQ3Ay-4,897 galaxyEnaQ3Ay-5,213 galaxyEnaQ3Ay-5,897 galaxyEnaQ3Ay-9,213 galaxyEnaQ3Ay-9,897 galaxyEnaQ3B-1-1-7,213 galaxyEnaQ3B-1-1-7,897 galaxyEnaQ3B-1-617-2,213 galaxyEnaQ3B-1-617-2,897 recomb,209 repository problematicSites,111 problematicSites,450 pyle,200 pyle,253 pyle,263 sarsCov2Phylo,621 sarsCov2PhyloPub,648 sarsCov2PhyloPub,891 treangen,204 variantMuts,846 varskip,65 represent PhyloCSF_smooth,319 PhyloCSF_smooth,527 PhyloCSFpower,334 PhyloCSFpower,542 Q0_tracks,290 Q1_tracks,292 Q2_tracks,292 Q3_tracks,292 abEscape,276 abEscape,293 bloomEscMabAvg,280 bloomEscMabAvg,297 bloomEscMax,286 bloomEscMax,303 bloomEscSerumAvg,281 bloomEscSerumAvg,298 bloomEscTop,284 bloomEscTop,301 escape,283 escape,300 galaxyEna,292 galaxyEnaQ0Ba-1,288 galaxyEnaQ0Ba-1-1,288 galaxyEnaQ0Ba-1-1-11,288 galaxyEnaQ0Ba-1-17,288 galaxyEnaQ0Ba-2,288 galaxyEnaQ1Ay-4,288 galaxyEnaQ1Ay-4-2,288 galaxyEnaQ1Ay-4-2-2,288 galaxyEnaQ1Ay-43,288 galaxyEnaQ1Ba-1-17,288 galaxyEnaQ2Ay-120,288 galaxyEnaQ2Ay-122,288 galaxyEnaQ2Ay-4,288 galaxyEnaQ2Ay-5,288 galaxyEnaQ2Ay-6,288 galaxyEnaQ3Ay-4,288 galaxyEnaQ3Ay-5,288 galaxyEnaQ3Ay-9,288 galaxyEnaQ3B-1-1-7,288 galaxyEnaQ3B-1-617-2,288 mccoy,276 mccoy,293 rappuoli,283 rappuoli,300 strainCons119way,361 strainCons119way,376 strainCons44way,309 strainCons44way,324 representations kimTranscripts,25 sarsCov2Phylo,797 transcriptome,17 representative variantMuts,220 represented PhyloCSF_smooth,104 PhyloCSFpower,119 gap,69 representing PhyloCSF_smooth,443 PhyloCSF_smooth,448 PhyloCSFpower,458 PhyloCSFpower,463 Starr_Bloom,82 Starr_Bloom_bind,76 gap,112 nextstrainSamples,404 nextstrainSamples,410 sarsCov2Phylo,408 sarsCov2PhyloPub,437 strainCons119way,1690 strainCons44way,1285 represents PhyloCSF_smooth,480 PhyloCSFpower,495 Q0_tracks,21 Q1_tracks,23 Q2_tracks,23 Q3_tracks,23 galaxyEna,23 galaxyEnaQ0Ba-1,19 galaxyEnaQ0Ba-1-1,19 galaxyEnaQ0Ba-1-1-11,19 galaxyEnaQ0Ba-1-17,19 galaxyEnaQ0Ba-2,19 galaxyEnaQ1Ay-4,19 galaxyEnaQ1Ay-4-2,19 galaxyEnaQ1Ay-4-2-2,19 galaxyEnaQ1Ay-43,19 galaxyEnaQ1Ba-1-17,19 galaxyEnaQ2Ay-120,19 galaxyEnaQ2Ay-122,19 galaxyEnaQ2Ay-4,19 galaxyEnaQ2Ay-5,19 galaxyEnaQ2Ay-6,19 galaxyEnaQ3Ay-4,19 galaxyEnaQ3Ay-5,19 galaxyEnaQ3Ay-9,19 galaxyEnaQ3B-1-1-7,19 galaxyEnaQ3B-1-617-2,19 kimTranscripts,252 targets,133 treangen,139 reproduced problematicSites,358 reproducible Q0_tracks,195 Q1_tracks,197 Q2_tracks,197 Q3_tracks,197 galaxyEna,197 galaxyEnaQ0Ba-1,193 galaxyEnaQ0Ba-1-1,193 galaxyEnaQ0Ba-1-1-11,193 galaxyEnaQ0Ba-1-17,193 galaxyEnaQ0Ba-2,193 galaxyEnaQ1Ay-4,193 galaxyEnaQ1Ay-4-2,193 galaxyEnaQ1Ay-4-2-2,193 galaxyEnaQ1Ay-43,193 galaxyEnaQ1Ba-1-17,193 galaxyEnaQ2Ay-120,193 galaxyEnaQ2Ay-122,193 galaxyEnaQ2Ay-4,193 galaxyEnaQ2Ay-5,193 galaxyEnaQ2Ay-6,193 galaxyEnaQ3Ay-4,193 galaxyEnaQ3Ay-5,193 galaxyEnaQ3Ay-9,193 galaxyEnaQ3B-1-1-7,193 galaxyEnaQ3B-1-617-2,193 gordon2,123 require Q0_tracks,1283 Q1_tracks,1285 Q2_tracks,1285 Q3_tracks,1285 epitopes,183 galaxyEna,1285 galaxyEnaQ0Ba-1,1281 galaxyEnaQ0Ba-1-1,1281 galaxyEnaQ0Ba-1-1-11,1281 galaxyEnaQ0Ba-1-17,1281 galaxyEnaQ0Ba-2,1281 galaxyEnaQ1Ay-4,1281 galaxyEnaQ1Ay-4-2,1281 galaxyEnaQ1Ay-4-2-2,1281 galaxyEnaQ1Ay-43,1281 galaxyEnaQ1Ba-1-17,1281 galaxyEnaQ2Ay-120,1281 galaxyEnaQ2Ay-122,1281 galaxyEnaQ2Ay-4,1281 galaxyEnaQ2Ay-5,1281 galaxyEnaQ2Ay-6,1281 galaxyEnaQ3Ay-4,1281 galaxyEnaQ3Ay-5,1281 galaxyEnaQ3Ay-9,1281 galaxyEnaQ3B-1-1-7,1281 galaxyEnaQ3B-1-617-2,1281 nextstrainSamples,690 required Q0_tracks,95 Q1_tracks,97 Q2_tracks,97 Q3_tracks,97 galaxyEna,97 galaxyEnaQ0Ba-1,93 galaxyEnaQ0Ba-1-1,93 galaxyEnaQ0Ba-1-1-11,93 galaxyEnaQ0Ba-1-17,93 galaxyEnaQ0Ba-2,93 galaxyEnaQ1Ay-4,93 galaxyEnaQ1Ay-4-2,93 galaxyEnaQ1Ay-4-2-2,93 galaxyEnaQ1Ay-43,93 galaxyEnaQ1Ba-1-17,93 galaxyEnaQ2Ay-120,93 galaxyEnaQ2Ay-122,93 galaxyEnaQ2Ay-4,93 galaxyEnaQ2Ay-5,93 galaxyEnaQ2Ay-6,93 galaxyEnaQ3Ay-4,93 galaxyEnaQ3Ay-5,93 galaxyEnaQ3Ay-9,93 galaxyEnaQ3B-1-1-7,93 galaxyEnaQ3B-1-617-2,93 transcriptome,157 requires nextstrainSamples,791 transcriptome,222 variantMuts,869 rerooted sarsCov2PhyloPub,855 res PhyloCSF_smooth,771 iedb,122 multiz7way,1026 multiz7way,1069 multiz7way,1199 multiz7way,1266 pdb,155 simpleRepeat,87 strainCons119way,2404 strainCons119way,2447 strainCons119way,2577 strainCons119way,2644 strainCons44way,1999 strainCons44way,2042 strainCons44way,2172 strainCons44way,2239 unipCov2AliSwissprot,455 unipCov2Chain,684 unipCov2DisulfBond,680 unipCov2Domain,679 unipCov2Interest,338 unipCov2LocCytopl,679 unipCov2LocExtra,679 unipCov2LocSignal,680 unipCov2LocTransMemb,680 unipCov2Modif,683 unipCov2Mut,680 unipCov2Other,680 unipCov2Repeat,678 unipCov2Struct,682 research Negative_Selection,14 PhyloCSFpower,750 Positive_Selection,14 epitopes,312 nextstrainFreq,320 nextstrainParsimony,418 nextstrainSamples,895 nextstrainSamples,966 pond,11 pond,25 rosettaMhc,387 sarsCov2Phylo,831 sarsCov2Phylo,916 sarsCov2PhyloPub,914 sarsCov2PhyloPub,958 sarsCov2PhyloPub,1022 variantMuts,1177 variantMuts,1217 researchers nextstrainClade,233 nextstrainFreq,368 nextstrainGene,182 sarsCov2Phylo,800 reset multiz7way,285 residues contacts,6 contacts,23 contacts,45 contacts,57 contacts,78 unipCov2Chain,203 unipCov2DisulfBond,199 unipCov2Domain,198 unipCov2LocCytopl,198 unipCov2LocExtra,198 unipCov2LocSignal,199 unipCov2LocTransMemb,199 unipCov2Modif,202 unipCov2Mut,199 unipCov2Other,199 unipCov2Repeat,197 unipCov2Struct,201 resistance resist,2 resist,8 resist,28 resistPred,2 resistPred,8 resistPred,46 resolution IgG_Z-score-_COVID-19_patients,438 IgM_Z-score-_COVID-19_patients,438 bpmIggCovidSum,447 bpmIgmCovidSum,447 pbm,447 phyloGenes,579 resolved phyloGenes,47 resource epitopes,220 epitopes,222 spikeMuts,378 unipCov2AliSwissprot,451 unipCov2AliSwissprot,489 unipCov2Chain,680 unipCov2Chain,718 unipCov2DisulfBond,676 unipCov2DisulfBond,714 unipCov2Domain,675 unipCov2Domain,713 unipCov2Interest,334 unipCov2Interest,372 unipCov2LocCytopl,675 unipCov2LocCytopl,713 unipCov2LocExtra,675 unipCov2LocExtra,713 unipCov2LocSignal,676 unipCov2LocSignal,714 unipCov2LocTransMemb,676 unipCov2LocTransMemb,714 unipCov2Modif,679 unipCov2Modif,717 unipCov2Mut,676 unipCov2Mut,714 unipCov2Other,676 unipCov2Other,714 unipCov2Repeat,674 unipCov2Repeat,712 unipCov2Struct,678 unipCov2Struct,716 variantMuts,90 variantMuts,1040 variantMuts,1205 variantMuts,1222 respective Q0_tracks,722 Q1_tracks,724 Q2_tracks,724 Q3_tracks,724 galaxyEna,724 galaxyEnaQ0Ba-1,720 galaxyEnaQ0Ba-1-1,720 galaxyEnaQ0Ba-1-1-11,720 galaxyEnaQ0Ba-1-17,720 galaxyEnaQ0Ba-2,720 galaxyEnaQ1Ay-4,720 galaxyEnaQ1Ay-4-2,720 galaxyEnaQ1Ay-4-2-2,720 galaxyEnaQ1Ay-43,720 galaxyEnaQ1Ba-1-17,720 galaxyEnaQ2Ay-120,720 galaxyEnaQ2Ay-122,720 galaxyEnaQ2Ay-4,720 galaxyEnaQ2Ay-5,720 galaxyEnaQ2Ay-6,720 galaxyEnaQ3Ay-4,720 galaxyEnaQ3Ay-5,720 galaxyEnaQ3Ay-9,720 galaxyEnaQ3B-1-1-7,720 galaxyEnaQ3B-1-617-2,720 nextstrainFreq,305 nextstrainSamples,957 sarsCov2Phylo,907 sarsCov2PhyloPub,1013 respiratory abEscape,102 bloomEscMabAvg,106 bloomEscMax,112 bloomEscSerumAvg,107 bloomEscTop,110 escape,109 mccoy,102 multiz7way,707 potPathoIndel,41 rappuoli,109 strainCons119way,1335 swift,72 vaccines,580 variantMuts,1380 response cd8escape,85 iggAllSum,3 iggAllSum,12 igmAllSum,3 igmAllSum,12 pbmShanghai,131 pbmShanghai,289 pbmShanghai,298 spikeMuts,47 responses IgG_Z-score-_COVID-19_patients,55 IgM_Z-score-_COVID-19_patients,55 Q0_tracks,1278 Q1_tracks,1280 Q2_tracks,1280 Q3_tracks,1280 bpmIggCovidSum,64 bpmIgmCovidSum,64 cd8escape,55 cd8escape,222 epitopes,74 epitopes,146 epitopes,157 epitopes,198 epitopes,207 epitopes,249 epitopes,334 galaxyEna,1280 galaxyEnaQ0Ba-1,1276 galaxyEnaQ0Ba-1-1,1276 galaxyEnaQ0Ba-1-1-11,1276 galaxyEnaQ0Ba-1-17,1276 galaxyEnaQ0Ba-2,1276 galaxyEnaQ1Ay-4,1276 galaxyEnaQ1Ay-4-2,1276 galaxyEnaQ1Ay-4-2-2,1276 galaxyEnaQ1Ay-43,1276 galaxyEnaQ1Ba-1-17,1276 galaxyEnaQ2Ay-120,1276 galaxyEnaQ2Ay-122,1276 galaxyEnaQ2Ay-4,1276 galaxyEnaQ2Ay-5,1276 galaxyEnaQ2Ay-6,1276 galaxyEnaQ3Ay-4,1276 galaxyEnaQ3Ay-5,1276 galaxyEnaQ3Ay-9,1276 galaxyEnaQ3B-1-1-7,1276 galaxyEnaQ3B-1-617-2,1276 pbm,64 pbmShanghai,64 poranHla1,282 poranHla2,282 rosettaMhc,48 rest articV4_1,86 cpgIslandExt,518 cpgIslandExtUnmasked,521 cpgIslandSuper,518 restores articV4_1,32 restricted IgG_Z-score-_COVID-19_patients,258 IgM_Z-score-_COVID-19_patients,258 bpmIggCovidSum,267 bpmIgmCovidSum,267 cd8escape,123 pbm,267 pbmShanghai,241 poranHla1,45 poranHla2,45 rosettaMhc,173 restricting variantMuts,803 variantMuts,809 restriction iedb,93 restrictions poranHla1,103 poranHla2,103 restricts Q0_tracks,57 Q1_tracks,59 Q2_tracks,59 Q3_tracks,59 galaxyEna,59 galaxyEnaQ0Ba-1,55 galaxyEnaQ0Ba-1-1,55 galaxyEnaQ0Ba-1-1-11,55 galaxyEnaQ0Ba-1-17,55 galaxyEnaQ0Ba-2,55 galaxyEnaQ1Ay-4,55 galaxyEnaQ1Ay-4-2,55 galaxyEnaQ1Ay-4-2-2,55 galaxyEnaQ1Ay-43,55 galaxyEnaQ1Ba-1-17,55 galaxyEnaQ2Ay-120,55 galaxyEnaQ2Ay-122,55 galaxyEnaQ2Ay-4,55 galaxyEnaQ2Ay-5,55 galaxyEnaQ2Ay-6,55 galaxyEnaQ3Ay-4,55 galaxyEnaQ3Ay-5,55 galaxyEnaQ3Ay-9,55 galaxyEnaQ3B-1-1-7,55 galaxyEnaQ3B-1-617-2,55 result Q0_tracks,1113 Q1_tracks,1115 Q2_tracks,1115 Q3_tracks,1115 cpgIslandExt,112 cpgIslandExtUnmasked,115 cpgIslandSuper,112 galaxyEna,1115 galaxyEnaQ0Ba-1,1111 galaxyEnaQ0Ba-1-1,1111 galaxyEnaQ0Ba-1-1-11,1111 galaxyEnaQ0Ba-1-17,1111 galaxyEnaQ0Ba-2,1111 galaxyEnaQ1Ay-4,1111 galaxyEnaQ1Ay-4-2,1111 galaxyEnaQ1Ay-4-2-2,1111 galaxyEnaQ1Ay-43,1111 galaxyEnaQ1Ba-1-17,1111 galaxyEnaQ2Ay-120,1111 galaxyEnaQ2Ay-122,1111 galaxyEnaQ2Ay-4,1111 galaxyEnaQ2Ay-5,1111 galaxyEnaQ2Ay-6,1111 galaxyEnaQ3Ay-4,1111 galaxyEnaQ3Ay-5,1111 galaxyEnaQ3Ay-9,1111 galaxyEnaQ3B-1-1-7,1111 galaxyEnaQ3B-1-617-2,1111 pbmShanghai,348 recomb,137 recomb,218 treangen,270 vaccines,214 resulting multiz7way,732 nextstrainSamples,994 pond,219 strainCons119way,1492 strainCons119way,1779 strainCons44way,1162 strainCons44way,1374 results Q0_tracks,227 Q0_tracks,268 Q0_tracks,870 Q0_tracks,957 Q1_tracks,229 Q1_tracks,270 Q1_tracks,872 Q1_tracks,959 Q2_tracks,229 Q2_tracks,270 Q2_tracks,872 Q2_tracks,959 Q3_tracks,229 Q3_tracks,270 Q3_tracks,872 Q3_tracks,959 abEscape,145 abEscape,178 bloomEscMabAvg,149 bloomEscMabAvg,182 bloomEscMax,155 bloomEscMax,188 bloomEscSerumAvg,150 bloomEscSerumAvg,183 bloomEscTop,153 bloomEscTop,186 escape,152 escape,185 galaxyEna,229 galaxyEna,270 galaxyEna,872 galaxyEna,959 galaxyEnaQ0Ba-1,225 galaxyEnaQ0Ba-1,266 galaxyEnaQ0Ba-1,868 galaxyEnaQ0Ba-1,955 galaxyEnaQ0Ba-1-1,225 galaxyEnaQ0Ba-1-1,266 galaxyEnaQ0Ba-1-1,868 galaxyEnaQ0Ba-1-1,955 galaxyEnaQ0Ba-1-1-11,225 galaxyEnaQ0Ba-1-1-11,266 galaxyEnaQ0Ba-1-1-11,868 galaxyEnaQ0Ba-1-1-11,955 galaxyEnaQ0Ba-1-17,225 galaxyEnaQ0Ba-1-17,266 galaxyEnaQ0Ba-1-17,868 galaxyEnaQ0Ba-1-17,955 galaxyEnaQ0Ba-2,225 galaxyEnaQ0Ba-2,266 galaxyEnaQ0Ba-2,868 galaxyEnaQ0Ba-2,955 galaxyEnaQ1Ay-4,225 galaxyEnaQ1Ay-4,266 galaxyEnaQ1Ay-4,868 galaxyEnaQ1Ay-4,955 galaxyEnaQ1Ay-4-2,225 galaxyEnaQ1Ay-4-2,266 galaxyEnaQ1Ay-4-2,868 galaxyEnaQ1Ay-4-2,955 galaxyEnaQ1Ay-4-2-2,225 galaxyEnaQ1Ay-4-2-2,266 galaxyEnaQ1Ay-4-2-2,868 galaxyEnaQ1Ay-4-2-2,955 galaxyEnaQ1Ay-43,225 galaxyEnaQ1Ay-43,266 galaxyEnaQ1Ay-43,868 galaxyEnaQ1Ay-43,955 galaxyEnaQ1Ba-1-17,225 galaxyEnaQ1Ba-1-17,266 galaxyEnaQ1Ba-1-17,868 galaxyEnaQ1Ba-1-17,955 galaxyEnaQ2Ay-120,225 galaxyEnaQ2Ay-120,266 galaxyEnaQ2Ay-120,868 galaxyEnaQ2Ay-120,955 galaxyEnaQ2Ay-122,225 galaxyEnaQ2Ay-122,266 galaxyEnaQ2Ay-122,868 galaxyEnaQ2Ay-122,955 galaxyEnaQ2Ay-4,225 galaxyEnaQ2Ay-4,266 galaxyEnaQ2Ay-4,868 galaxyEnaQ2Ay-4,955 galaxyEnaQ2Ay-5,225 galaxyEnaQ2Ay-5,266 galaxyEnaQ2Ay-5,868 galaxyEnaQ2Ay-5,955 galaxyEnaQ2Ay-6,225 galaxyEnaQ2Ay-6,266 galaxyEnaQ2Ay-6,868 galaxyEnaQ2Ay-6,955 galaxyEnaQ3Ay-4,225 galaxyEnaQ3Ay-4,266 galaxyEnaQ3Ay-4,868 galaxyEnaQ3Ay-4,955 galaxyEnaQ3Ay-5,225 galaxyEnaQ3Ay-5,266 galaxyEnaQ3Ay-5,868 galaxyEnaQ3Ay-5,955 galaxyEnaQ3Ay-9,225 galaxyEnaQ3Ay-9,266 galaxyEnaQ3Ay-9,868 galaxyEnaQ3Ay-9,955 galaxyEnaQ3B-1-1-7,225 galaxyEnaQ3B-1-1-7,266 galaxyEnaQ3B-1-1-7,868 galaxyEnaQ3B-1-1-7,955 galaxyEnaQ3B-1-617-2,225 galaxyEnaQ3B-1-617-2,266 galaxyEnaQ3B-1-617-2,868 galaxyEnaQ3B-1-617-2,955 mccoy,145 mccoy,178 multiz7way,185 multiz7way,207 nextstrainSamples,655 pond,35 rapid,137 rappuoli,152 rappuoli,185 sarsCov2Phylo,869 sarsCov2PhyloPub,975 strainCons119way,534 strainCons119way,556 strainCons44way,482 strainCons44way,504 variantMuts,820 variantMuts,957 resume transcriptome,298 retained strainCons119way,2162 strainCons44way,1757 variantMuts,891 variantMuts,937 retaining unipCov2AliSwissprot,227 rev strainCons119way,1724 strainCons119way,1922 strainCons44way,1319 strainCons44way,1517 reveal Q0_tracks,558 Q1_tracks,560 Q2_tracks,560 Q3_tracks,560 galaxyEna,560 galaxyEnaQ0Ba-1,556 galaxyEnaQ0Ba-1-1,556 galaxyEnaQ0Ba-1-1-11,556 galaxyEnaQ0Ba-1-17,556 galaxyEnaQ0Ba-2,556 galaxyEnaQ1Ay-4,556 galaxyEnaQ1Ay-4-2,556 galaxyEnaQ1Ay-4-2-2,556 galaxyEnaQ1Ay-43,556 galaxyEnaQ1Ba-1-17,556 galaxyEnaQ2Ay-120,556 galaxyEnaQ2Ay-122,556 galaxyEnaQ2Ay-4,556 galaxyEnaQ2Ay-5,556 galaxyEnaQ2Ay-6,556 galaxyEnaQ3Ay-4,556 galaxyEnaQ3Ay-5,556 galaxyEnaQ3Ay-9,556 galaxyEnaQ3B-1-1-7,556 galaxyEnaQ3B-1-617-2,556 reveals Starr_Bloom,268 Starr_Bloom_bind,262 gordon2,30 gordon2,262 pyle,297 recomb,347 reverse PhyloCSF_smooth,336 PhyloCSFpower,351 kimIvtCov,34 primers,80 vaccines,531 reversibility strainCons119way,1777 strainCons44way,1372 reversible strainCons119way,1921 strainCons44way,1516 reviewing rfam,142 revised rfam,123 rf00164 rfam,128 rf00165 rfam,129 rf00507 rfam,131 rf1 strainCons44way,1036 rf4092 strainCons44way,1082 rfam rfam,1 rfam,2 rfam,7 rfam,21 rfam,51 rfam,75 rfam,126 rfam,153 rfam,172 rfam,185 rnaStructRangan,34 rfam.org rfam,182 rfam.xfam.org rnaStructRangan,39 rh epitopes,325 rhiju rnaStructRangan,108 rho strainCons119way,1977 strainCons44way,1572 ribo-seq Calu3_07hpi,5 Calu3_07hpi,27 Calu3_07hpi,132 Calu3_07hpi,166 Calu3_07hpi,238 Calu3_07hpi,264 ORFs,25 ORFs,130 ORFs,164 ORFs,236 ORFs,262 Vero6_05hpi,5 Vero6_05hpi,27 Vero6_05hpi,132 Vero6_05hpi,166 Vero6_05hpi,238 Vero6_05hpi,264 Vero6_24hpi,5 Vero6_24hpi,27 Vero6_24hpi,132 Vero6_24hpi,166 Vero6_24hpi,238 Vero6_24hpi,264 weizmanOrfs,9 weizmanOrfs,33 weizmanOrfs,138 weizmanOrfs,172 weizmanOrfs,244 weizmanOrfs,270 ribosome Calu3_07hpi,94 Calu3_07hpi,223 ORFs,92 ORFs,221 Vero6_05hpi,94 Vero6_05hpi,223 Vero6_24hpi,94 Vero6_24hpi,223 weizmanOrfs,100 weizmanOrfs,229 ribosome-profiling Calu3_07hpi,123 ORFs,121 Vero6_05hpi,123 Vero6_24hpi,123 weizmanOrfs,129 ribosomes Calu3_07hpi,157 Calu3_07hpi,187 ORFs,155 ORFs,185 Vero6_05hpi,157 Vero6_05hpi,187 Vero6_24hpi,157 Vero6_24hpi,187 weizmanOrfs,163 weizmanOrfs,193 rice treangen,201 richard multiz7way,894 poranHla1,270 poranHla2,270 strainCons119way,2272 strainCons44way,1867 richards multiz7way,1054 strainCons119way,2432 strainCons44way,2027 riemer multiz7way,1171 strainCons119way,2549 strainCons44way,2144 right nextstrainFreq,299 nextstrainSamples,512 nextstrainSamples,951 sarsCov2Phylo,901 sarsCov2PhyloPub,1007 right-clicking sarsCov2Phylo,560 sarsCov2PhyloPub,585 rio variantMuts,1426 ripples recomb,22 recomb,100 recomb,172 recomb,187 recomb,208 rita abEscape,781 bloomEscMabAvg,785 bloomEscMax,791 bloomEscSerumAvg,786 bloomEscTop,789 escape,788 mccoy,781 rappuoli,788 riyadh strainCons119way,1417 rj pond,269 rm PhyloCSFpower,721 rm1 strainCons44way,1023 rn strainCons119way,1457 rna cas13Crispr,202 cas13Crispr,335 icshape,2 icshape,5 icshape,216 kimIvtCov,7 kimIvtCov,46 kimIvtCov,67 kimIvtCov,70 kimIvtCov,122 kimIvtCov,130 kimIvtCov,134 kimIvtCov,149 kimIvtCov,156 kimNp,25 kimRnaMod,2 kimRnaMod,5 kimRnaMod,56 kimTranscripts,137 kimTranscripts,144 kimTranscripts,156 kimTranscripts,199 kimTranscripts,254 kimTranscripts,259 nextstrainParsimony,26 nextstrainSamples,23 pyle,4 pyle,29 pyle,184 pyle,219 pyle,324 rfam,17 rfam,38 rnaStructRangan,2 rnaStructRangan,6 rnaStructRangan,18 rnaStructRangan,51 rnaStructRangan,110 transcriptome,205 vaccines,44 vaccines,554 rna-modifications kimRnaMod,33 rna-seq Calu3_07hpi,7 Calu3_07hpi,29 ORFs,27 Vero6_05hpi,7 Vero6_05hpi,29 Vero6_24hpi,7 Vero6_24hpi,29 weizmanOrfs,7 weizmanOrfs,35 rna-sequencing Calu3_07hpi,197 ORFs,195 Vero6_05hpi,197 Vero6_24hpi,197 weizmanOrfs,203 rnas PhyloCSF_smooth,103 PhyloCSFpower,118 kimTranscripts,181 kimTranscripts,212 kimTranscripts,227 kimTranscripts,270 rfam,170 transcriptome,316 rnasep crisprDet,77 rnax vaccines,242 vaccines,263 roach Q0_tracks,1319 Q1_tracks,1321 Q2_tracks,1321 Q3_tracks,1321 galaxyEna,1321 galaxyEnaQ0Ba-1,1317 galaxyEnaQ0Ba-1-1,1317 galaxyEnaQ0Ba-1-1-11,1317 galaxyEnaQ0Ba-1-17,1317 galaxyEnaQ0Ba-2,1317 galaxyEnaQ1Ay-4,1317 galaxyEnaQ1Ay-4-2,1317 galaxyEnaQ1Ay-4-2-2,1317 galaxyEnaQ1Ay-43,1317 galaxyEnaQ1Ba-1-17,1317 galaxyEnaQ2Ay-120,1317 galaxyEnaQ2Ay-122,1317 galaxyEnaQ2Ay-4,1317 galaxyEnaQ2Ay-5,1317 galaxyEnaQ2Ay-6,1317 galaxyEnaQ3Ay-4,1317 galaxyEnaQ3Ay-5,1317 galaxyEnaQ3Ay-9,1317 galaxyEnaQ3B-1-1-7,1317 galaxyEnaQ3B-1-617-2,1317 rob sarsCov2Phylo,77 sarsCov2Phylo,565 sarsCov2Phylo,858 sarsCov2PhyloPub,590 sarsCov2PhyloPub,964 variantMuts,1191 variantMuts,1433 robert multiz7way,834 strainCons119way,2212 strainCons44way,1807 robertson variantMuts,1295 roblanf sarsCov2Phylo,928 rooney poranHla1,267 poranHla2,267 root sarsCov2PhyloPub,777 rosenbloom multiz7way,915 multiz7way,1013 multiz7way,1046 multiz7way,1181 strainCons119way,2293 strainCons119way,2391 strainCons119way,2424 strainCons119way,2559 strainCons44way,1888 strainCons44way,1986 strainCons44way,2019 strainCons44way,2154 variantMuts,1236 rosetta rosettaMhc,9 rosettaMhc,217 rosettaMhc,231 rosettaMhc,235 rosettaMhc,240 rosettaMhc,309 rosettamhc rosettaMhc,2 rosettaMhc,52 rosettaMhc,131 rosettaMhc,183 rosettaMhc,294 rosettamhc.chemistry.ucsc.edu rosettaMhc,119 roskin multiz7way,1177 strainCons119way,2555 strainCons44way,2150 rothlauf abEscape,778 bloomEscMabAvg,782 bloomEscMax,788 bloomEscSerumAvg,783 bloomEscTop,786 escape,785 mccoy,778 rappuoli,785 roughly Q0_tracks,995 Q1_tracks,997 Q2_tracks,997 Q3_tracks,997 galaxyEna,997 galaxyEnaQ0Ba-1,993 galaxyEnaQ0Ba-1-1,993 galaxyEnaQ0Ba-1-1-11,993 galaxyEnaQ0Ba-1-17,993 galaxyEnaQ0Ba-2,993 galaxyEnaQ1Ay-4,993 galaxyEnaQ1Ay-4-2,993 galaxyEnaQ1Ay-4-2-2,993 galaxyEnaQ1Ay-43,993 galaxyEnaQ1Ba-1-17,993 galaxyEnaQ2Ay-120,993 galaxyEnaQ2Ay-122,993 galaxyEnaQ2Ay-4,993 galaxyEnaQ2Ay-5,993 galaxyEnaQ2Ay-6,993 galaxyEnaQ3Ay-4,993 galaxyEnaQ3Ay-5,993 galaxyEnaQ3Ay-9,993 galaxyEnaQ3B-1-1-7,993 galaxyEnaQ3B-1-617-2,993 pbmShanghai,134 rounded kimTranscripts,189 kimTranscripts,276 row nextstrainSamples,357 nextstrainSamples,381 sarsCov2Phylo,361 sarsCov2Phylo,385 sarsCov2Phylo,529 sarsCov2PhyloPub,376 sarsCov2PhyloPub,390 sarsCov2PhyloPub,414 sarsCov2PhyloPub,554 rp strainCons44way,1016 rp3 strainCons44way,1100 rs multiz7way,938 multiz7way,1231 phyloGenes,520 strainCons119way,2316 strainCons119way,2609 strainCons44way,1911 strainCons44way,2204 rs4081 strainCons44way,1094 rs4084 strainCons44way,1118 rs4231 strainCons44way,1134 rs4237 strainCons44way,1050 rs4247 strainCons44way,1090 rs4255 strainCons44way,1057 rs672 strainCons44way,1031 rs7327 strainCons44way,1130 rs9401 strainCons44way,1122 rt-pcr primers,1 primers,3 primers,269 rt-qpcr primers,62 primers,73 ruis sarsCov2Phylo,945 sarsCov2PhyloPub,1065 variantMuts,1252 run IgG_Z-score-_COVID-19_patients,213 IgM_Z-score-_COVID-19_patients,213 PhyloCSF_smooth,383 PhyloCSFpower,400 bpmIggCovidSum,222 bpmIgmCovidSum,222 epitopes,95 microdel,120 nextstrainSamples,818 pbm,222 pbmShanghai,369 primers,208 variantMuts,969 variantMuts,1229 windowmaskerSdust,53 running sarsCov2Phylo,862 sarsCov2PhyloPub,968 strainCons119way,2072 strainCons44way,1667 runs sarsCov2Phylo,568 sarsCov2PhyloPub,593 strainCons119way,256 strainCons44way,204 rush variantMuts,1480 ry141 strainCons119way,1418 ryan vaccines,594 s Calu3_07hpi,353 Negative_Selection,13 ORFs,351 PhyloCSF_smooth,92 PhyloCSF_smooth,747 PhyloCSF_smooth,751 PhyloCSFpower,107 PhyloCSFpower,713 PhyloCSFpower,717 Positive_Selection,13 Q0_tracks,356 Q0_tracks,431 Q0_tracks,1248 Q0_tracks,1260 Q0_tracks,1268 Q0_tracks,1300 Q0_tracks,1322 Q0_tracks,1334 Q1_tracks,358 Q1_tracks,433 Q1_tracks,1250 Q1_tracks,1262 Q1_tracks,1270 Q1_tracks,1302 Q1_tracks,1324 Q1_tracks,1336 Q2_tracks,358 Q2_tracks,433 Q2_tracks,1250 Q2_tracks,1262 Q2_tracks,1270 Q2_tracks,1302 Q2_tracks,1324 Q2_tracks,1336 Q3_tracks,358 Q3_tracks,433 Q3_tracks,1250 Q3_tracks,1262 Q3_tracks,1270 Q3_tracks,1302 Q3_tracks,1324 Q3_tracks,1336 Starr_Bloom,4 Starr_Bloom,12 Starr_Bloom,93 Starr_Bloom,106 Starr_Bloom_bind,4 Starr_Bloom_bind,13 Starr_Bloom_bind,87 Starr_Bloom_bind,101 Vero6_05hpi,353 Vero6_24hpi,353 abEscape,48 abEscape,792 abEscape,801 addgene,71 addgene,101 addgene,258 augustusGene,104 augustusGene,221 augustusGene,319 bloomEscMabAvg,6 bloomEscMabAvg,52 bloomEscMabAvg,796 bloomEscMabAvg,805 bloomEscMax,6 bloomEscMax,58 bloomEscMax,802 bloomEscMax,811 bloomEscSerumAvg,6 bloomEscSerumAvg,53 bloomEscSerumAvg,797 bloomEscSerumAvg,806 bloomEscTop,7 bloomEscTop,56 bloomEscTop,800 bloomEscTop,809 bloomEscTotal,6 contacts,244 cpgIslandExt,436 cpgIslandExt,440 cpgIslandExt,442 cpgIslandExt,443 cpgIslandExt,445 cpgIslandExt,447 cpgIslandExt,453 cpgIslandExt,455 cpgIslandExtUnmasked,439 cpgIslandExtUnmasked,443 cpgIslandExtUnmasked,445 cpgIslandExtUnmasked,446 cpgIslandExtUnmasked,448 cpgIslandExtUnmasked,450 cpgIslandExtUnmasked,456 cpgIslandExtUnmasked,458 cpgIslandSuper,436 cpgIslandSuper,440 cpgIslandSuper,442 cpgIslandSuper,443 cpgIslandSuper,445 cpgIslandSuper,447 cpgIslandSuper,453 cpgIslandSuper,455 crisprDet,41 escape,55 escape,799 escape,808 galaxyEna,358 galaxyEna,433 galaxyEna,1250 galaxyEna,1262 galaxyEna,1270 galaxyEna,1302 galaxyEna,1324 galaxyEna,1336 galaxyEnaQ0Ba-1,354 galaxyEnaQ0Ba-1,429 galaxyEnaQ0Ba-1,1246 galaxyEnaQ0Ba-1,1258 galaxyEnaQ0Ba-1,1266 galaxyEnaQ0Ba-1,1298 galaxyEnaQ0Ba-1,1320 galaxyEnaQ0Ba-1,1332 galaxyEnaQ0Ba-1-1,354 galaxyEnaQ0Ba-1-1,429 galaxyEnaQ0Ba-1-1,1246 galaxyEnaQ0Ba-1-1,1258 galaxyEnaQ0Ba-1-1,1266 galaxyEnaQ0Ba-1-1,1298 galaxyEnaQ0Ba-1-1,1320 galaxyEnaQ0Ba-1-1,1332 galaxyEnaQ0Ba-1-1-11,354 galaxyEnaQ0Ba-1-1-11,429 galaxyEnaQ0Ba-1-1-11,1246 galaxyEnaQ0Ba-1-1-11,1258 galaxyEnaQ0Ba-1-1-11,1266 galaxyEnaQ0Ba-1-1-11,1298 galaxyEnaQ0Ba-1-1-11,1320 galaxyEnaQ0Ba-1-1-11,1332 galaxyEnaQ0Ba-1-17,354 galaxyEnaQ0Ba-1-17,429 galaxyEnaQ0Ba-1-17,1246 galaxyEnaQ0Ba-1-17,1258 galaxyEnaQ0Ba-1-17,1266 galaxyEnaQ0Ba-1-17,1298 galaxyEnaQ0Ba-1-17,1320 galaxyEnaQ0Ba-1-17,1332 galaxyEnaQ0Ba-2,354 galaxyEnaQ0Ba-2,429 galaxyEnaQ0Ba-2,1246 galaxyEnaQ0Ba-2,1258 galaxyEnaQ0Ba-2,1266 galaxyEnaQ0Ba-2,1298 galaxyEnaQ0Ba-2,1320 galaxyEnaQ0Ba-2,1332 galaxyEnaQ1Ay-4,354 galaxyEnaQ1Ay-4,429 galaxyEnaQ1Ay-4,1246 galaxyEnaQ1Ay-4,1258 galaxyEnaQ1Ay-4,1266 galaxyEnaQ1Ay-4,1298 galaxyEnaQ1Ay-4,1320 galaxyEnaQ1Ay-4,1332 galaxyEnaQ1Ay-4-2,354 galaxyEnaQ1Ay-4-2,429 galaxyEnaQ1Ay-4-2,1246 galaxyEnaQ1Ay-4-2,1258 galaxyEnaQ1Ay-4-2,1266 galaxyEnaQ1Ay-4-2,1298 galaxyEnaQ1Ay-4-2,1320 galaxyEnaQ1Ay-4-2,1332 galaxyEnaQ1Ay-4-2-2,354 galaxyEnaQ1Ay-4-2-2,429 galaxyEnaQ1Ay-4-2-2,1246 galaxyEnaQ1Ay-4-2-2,1258 galaxyEnaQ1Ay-4-2-2,1266 galaxyEnaQ1Ay-4-2-2,1298 galaxyEnaQ1Ay-4-2-2,1320 galaxyEnaQ1Ay-4-2-2,1332 galaxyEnaQ1Ay-43,354 galaxyEnaQ1Ay-43,429 galaxyEnaQ1Ay-43,1246 galaxyEnaQ1Ay-43,1258 galaxyEnaQ1Ay-43,1266 galaxyEnaQ1Ay-43,1298 galaxyEnaQ1Ay-43,1320 galaxyEnaQ1Ay-43,1332 galaxyEnaQ1Ba-1-17,354 galaxyEnaQ1Ba-1-17,429 galaxyEnaQ1Ba-1-17,1246 galaxyEnaQ1Ba-1-17,1258 galaxyEnaQ1Ba-1-17,1266 galaxyEnaQ1Ba-1-17,1298 galaxyEnaQ1Ba-1-17,1320 galaxyEnaQ1Ba-1-17,1332 galaxyEnaQ2Ay-120,354 galaxyEnaQ2Ay-120,429 galaxyEnaQ2Ay-120,1246 galaxyEnaQ2Ay-120,1258 galaxyEnaQ2Ay-120,1266 galaxyEnaQ2Ay-120,1298 galaxyEnaQ2Ay-120,1320 galaxyEnaQ2Ay-120,1332 galaxyEnaQ2Ay-122,354 galaxyEnaQ2Ay-122,429 galaxyEnaQ2Ay-122,1246 galaxyEnaQ2Ay-122,1258 galaxyEnaQ2Ay-122,1266 galaxyEnaQ2Ay-122,1298 galaxyEnaQ2Ay-122,1320 galaxyEnaQ2Ay-122,1332 galaxyEnaQ2Ay-4,354 galaxyEnaQ2Ay-4,429 galaxyEnaQ2Ay-4,1246 galaxyEnaQ2Ay-4,1258 galaxyEnaQ2Ay-4,1266 galaxyEnaQ2Ay-4,1298 galaxyEnaQ2Ay-4,1320 galaxyEnaQ2Ay-4,1332 galaxyEnaQ2Ay-5,354 galaxyEnaQ2Ay-5,429 galaxyEnaQ2Ay-5,1246 galaxyEnaQ2Ay-5,1258 galaxyEnaQ2Ay-5,1266 galaxyEnaQ2Ay-5,1298 galaxyEnaQ2Ay-5,1320 galaxyEnaQ2Ay-5,1332 galaxyEnaQ2Ay-6,354 galaxyEnaQ2Ay-6,429 galaxyEnaQ2Ay-6,1246 galaxyEnaQ2Ay-6,1258 galaxyEnaQ2Ay-6,1266 galaxyEnaQ2Ay-6,1298 galaxyEnaQ2Ay-6,1320 galaxyEnaQ2Ay-6,1332 galaxyEnaQ3Ay-4,354 galaxyEnaQ3Ay-4,429 galaxyEnaQ3Ay-4,1246 galaxyEnaQ3Ay-4,1258 galaxyEnaQ3Ay-4,1266 galaxyEnaQ3Ay-4,1298 galaxyEnaQ3Ay-4,1320 galaxyEnaQ3Ay-4,1332 galaxyEnaQ3Ay-5,354 galaxyEnaQ3Ay-5,429 galaxyEnaQ3Ay-5,1246 galaxyEnaQ3Ay-5,1258 galaxyEnaQ3Ay-5,1266 galaxyEnaQ3Ay-5,1298 galaxyEnaQ3Ay-5,1320 galaxyEnaQ3Ay-5,1332 galaxyEnaQ3Ay-9,354 galaxyEnaQ3Ay-9,429 galaxyEnaQ3Ay-9,1246 galaxyEnaQ3Ay-9,1258 galaxyEnaQ3Ay-9,1266 galaxyEnaQ3Ay-9,1298 galaxyEnaQ3Ay-9,1320 galaxyEnaQ3Ay-9,1332 galaxyEnaQ3B-1-1-7,354 galaxyEnaQ3B-1-1-7,429 galaxyEnaQ3B-1-1-7,1246 galaxyEnaQ3B-1-1-7,1258 galaxyEnaQ3B-1-1-7,1266 galaxyEnaQ3B-1-1-7,1298 galaxyEnaQ3B-1-1-7,1320 galaxyEnaQ3B-1-1-7,1332 galaxyEnaQ3B-1-617-2,354 galaxyEnaQ3B-1-617-2,429 galaxyEnaQ3B-1-617-2,1246 galaxyEnaQ3B-1-617-2,1258 galaxyEnaQ3B-1-617-2,1266 galaxyEnaQ3B-1-617-2,1298 galaxyEnaQ3B-1-617-2,1320 galaxyEnaQ3B-1-617-2,1332 genscan,190 genscan,194 genscan,210 igg,3 iggAllSum,5 igm,3 igmAllSum,5 kimRnaMod,13 mccoy,5 mccoy,48 mccoy,792 mccoy,801 microdel,118 microdel,252 multiz7way,944 multiz7way,1055 multiz7way,1137 multiz7way,1154 multiz7way,1246 nextstrainClade,112 nextstrainSamples,130 nextstrainSamples,295 nextstrainSamples,340 nextstrainSamples,414 nextstrainSamples,427 pbmShanghai,1 pbmShanghai,5 pbmShanghai,41 phyloGenes,84 pond,10 pond,24 pond,253 pond,265 poranHla1,266 poranHla2,266 pyle,22 pyle,251 rappuoli,6 rappuoli,55 rappuoli,799 rappuoli,808 resist,43 resistPred,52 resistPred,115 sarsCov2Phylo,79 sarsCov2Phylo,170 sarsCov2Phylo,181 sarsCov2Phylo,463 sarsCov2Phylo,636 sarsCov2Phylo,983 sarsCov2Phylo,1149 sarsCov2PhyloPub,177 sarsCov2PhyloPub,188 sarsCov2PhyloPub,492 sarsCov2PhyloPub,660 sarsCov2PhyloPub,854 sarsCov2PhyloPub,1103 sarsCov2PhyloPub,1282 strainCons119way,2182 strainCons119way,2322 strainCons119way,2433 strainCons119way,2515 strainCons119way,2532 strainCons119way,2624 strainCons44way,1777 strainCons44way,1917 strainCons44way,2028 strainCons44way,2110 strainCons44way,2127 strainCons44way,2219 treangen,10 treangen,90 treangen,311 vaccines,452 vaccines,455 vaccines,458 vaccines,654 variantMuts,1327 weizmanOrfs,359 s-pbm igg,1 iggAllSum,1 igm,1 igmAllSum,1 s-reactive targets,83 s.iorf1 phyloGenes,218 s1 abEscape,586 bloomEscMabAvg,590 bloomEscMax,596 bloomEscSerumAvg,591 bloomEscTop,594 escape,593 mccoy,586 rappuoli,593 targets,172 targets,228 s13040-021-00251-0 microdel,310 s13059-015-0603-7 phyloGenes,546 s2 Starr_Bloom,171 Starr_Bloom_bind,165 kimTranscripts,245 s2m rfam,37 s3 kimTranscripts,286 s4 kimTranscripts,314 s41467-021-22905-7 phyloGenes,613 s41587-021-01069-1 Q0_tracks,1353 Q1_tracks,1355 Q2_tracks,1355 Q3_tracks,1355 galaxyEna,1355 galaxyEnaQ0Ba-1,1351 galaxyEnaQ0Ba-1-1,1351 galaxyEnaQ0Ba-1-1-11,1351 galaxyEnaQ0Ba-1-17,1351 galaxyEnaQ0Ba-2,1351 galaxyEnaQ1Ay-4,1351 galaxyEnaQ1Ay-4-2,1351 galaxyEnaQ1Ay-4-2-2,1351 galaxyEnaQ1Ay-43,1351 galaxyEnaQ1Ba-1-17,1351 galaxyEnaQ2Ay-120,1351 galaxyEnaQ2Ay-122,1351 galaxyEnaQ2Ay-4,1351 galaxyEnaQ2Ay-5,1351 galaxyEnaQ2Ay-6,1351 galaxyEnaQ3Ay-4,1351 galaxyEnaQ3Ay-5,1351 galaxyEnaQ3Ay-9,1351 galaxyEnaQ3B-1-1-7,1351 galaxyEnaQ3B-1-617-2,1351 s477n spikeMuts,131 s98f spikeMuts,125 s_bind_avg S_bind_avg,1 s_expr_avg S_expr_avg_Expression,1 sa variantAaMutsV2_B_1_351,7 variantAaMuts_B_1_1_529,7 variantNucMutsV2_B_1_351,7 variantNucMuts_B_1_1_529,8 sabeti crisprDet,89 phyloGenes,529 saccharomyces augustusGene,223 saelfon PhyloCSFpower,758 sagulenko nextstrainClade,254 nextstrainFreq,389 nextstrainFreq,412 nextstrainGene,203 nextstrainParsimony,456 nextstrainSamples,1009 nextstrainSamples,1032 saintexpress gordon2,163 salimi iedb,107 salzberg genscan,189 same PhyloCSF_smooth,86 PhyloCSF_smooth,499 PhyloCSF_smooth,570 PhyloCSF_smooth,574 PhyloCSFpower,101 PhyloCSFpower,514 PhyloCSFpower,585 PhyloCSFpower,589 contacts,60 epitopes,283 nextstrainSamples,379 nextstrainSamples,594 problematicSites,356 rfam,74 sarsCov2Phylo,383 sarsCov2Phylo,587 sarsCov2PhyloPub,412 sarsCov2PhyloPub,614 strainCons119way,1760 strainCons44way,1355 same-frame PhyloCSF_smooth,521 PhyloCSFpower,536 sample Q0_tracks,71 Q0_tracks,98 Q0_tracks,347 Q0_tracks,615 Q0_tracks,642 Q0_tracks,880 Q0_tracks,939 Q1_tracks,73 Q1_tracks,100 Q1_tracks,349 Q1_tracks,617 Q1_tracks,644 Q1_tracks,882 Q1_tracks,941 Q2_tracks,73 Q2_tracks,100 Q2_tracks,349 Q2_tracks,617 Q2_tracks,644 Q2_tracks,882 Q2_tracks,941 Q3_tracks,73 Q3_tracks,100 Q3_tracks,349 Q3_tracks,617 Q3_tracks,644 Q3_tracks,882 Q3_tracks,941 abEscape,385 augustusGene,133 bloomEscMabAvg,389 bloomEscMax,395 bloomEscSerumAvg,390 bloomEscTop,393 crisprDet,80 escape,392 galaxyEna,73 galaxyEna,100 galaxyEna,349 galaxyEna,617 galaxyEna,644 galaxyEna,882 galaxyEna,941 galaxyEnaQ0Ba-1,69 galaxyEnaQ0Ba-1,96 galaxyEnaQ0Ba-1,345 galaxyEnaQ0Ba-1,613 galaxyEnaQ0Ba-1,640 galaxyEnaQ0Ba-1,878 galaxyEnaQ0Ba-1,937 galaxyEnaQ0Ba-1-1,69 galaxyEnaQ0Ba-1-1,96 galaxyEnaQ0Ba-1-1,345 galaxyEnaQ0Ba-1-1,613 galaxyEnaQ0Ba-1-1,640 galaxyEnaQ0Ba-1-1,878 galaxyEnaQ0Ba-1-1,937 galaxyEnaQ0Ba-1-1-11,69 galaxyEnaQ0Ba-1-1-11,96 galaxyEnaQ0Ba-1-1-11,345 galaxyEnaQ0Ba-1-1-11,613 galaxyEnaQ0Ba-1-1-11,640 galaxyEnaQ0Ba-1-1-11,878 galaxyEnaQ0Ba-1-1-11,937 galaxyEnaQ0Ba-1-17,69 galaxyEnaQ0Ba-1-17,96 galaxyEnaQ0Ba-1-17,345 galaxyEnaQ0Ba-1-17,613 galaxyEnaQ0Ba-1-17,640 galaxyEnaQ0Ba-1-17,878 galaxyEnaQ0Ba-1-17,937 galaxyEnaQ0Ba-2,69 galaxyEnaQ0Ba-2,96 galaxyEnaQ0Ba-2,345 galaxyEnaQ0Ba-2,613 galaxyEnaQ0Ba-2,640 galaxyEnaQ0Ba-2,878 galaxyEnaQ0Ba-2,937 galaxyEnaQ1Ay-4,69 galaxyEnaQ1Ay-4,96 galaxyEnaQ1Ay-4,345 galaxyEnaQ1Ay-4,613 galaxyEnaQ1Ay-4,640 galaxyEnaQ1Ay-4,878 galaxyEnaQ1Ay-4,937 galaxyEnaQ1Ay-4-2,69 galaxyEnaQ1Ay-4-2,96 galaxyEnaQ1Ay-4-2,345 galaxyEnaQ1Ay-4-2,613 galaxyEnaQ1Ay-4-2,640 galaxyEnaQ1Ay-4-2,878 galaxyEnaQ1Ay-4-2,937 galaxyEnaQ1Ay-4-2-2,69 galaxyEnaQ1Ay-4-2-2,96 galaxyEnaQ1Ay-4-2-2,345 galaxyEnaQ1Ay-4-2-2,613 galaxyEnaQ1Ay-4-2-2,640 galaxyEnaQ1Ay-4-2-2,878 galaxyEnaQ1Ay-4-2-2,937 galaxyEnaQ1Ay-43,69 galaxyEnaQ1Ay-43,96 galaxyEnaQ1Ay-43,345 galaxyEnaQ1Ay-43,613 galaxyEnaQ1Ay-43,640 galaxyEnaQ1Ay-43,878 galaxyEnaQ1Ay-43,937 galaxyEnaQ1Ba-1-17,69 galaxyEnaQ1Ba-1-17,96 galaxyEnaQ1Ba-1-17,345 galaxyEnaQ1Ba-1-17,613 galaxyEnaQ1Ba-1-17,640 galaxyEnaQ1Ba-1-17,878 galaxyEnaQ1Ba-1-17,937 galaxyEnaQ2Ay-120,69 galaxyEnaQ2Ay-120,96 galaxyEnaQ2Ay-120,345 galaxyEnaQ2Ay-120,613 galaxyEnaQ2Ay-120,640 galaxyEnaQ2Ay-120,878 galaxyEnaQ2Ay-120,937 galaxyEnaQ2Ay-122,69 galaxyEnaQ2Ay-122,96 galaxyEnaQ2Ay-122,345 galaxyEnaQ2Ay-122,613 galaxyEnaQ2Ay-122,640 galaxyEnaQ2Ay-122,878 galaxyEnaQ2Ay-122,937 galaxyEnaQ2Ay-4,69 galaxyEnaQ2Ay-4,96 galaxyEnaQ2Ay-4,345 galaxyEnaQ2Ay-4,613 galaxyEnaQ2Ay-4,640 galaxyEnaQ2Ay-4,878 galaxyEnaQ2Ay-4,937 galaxyEnaQ2Ay-5,69 galaxyEnaQ2Ay-5,96 galaxyEnaQ2Ay-5,345 galaxyEnaQ2Ay-5,613 galaxyEnaQ2Ay-5,640 galaxyEnaQ2Ay-5,878 galaxyEnaQ2Ay-5,937 galaxyEnaQ2Ay-6,69 galaxyEnaQ2Ay-6,96 galaxyEnaQ2Ay-6,345 galaxyEnaQ2Ay-6,613 galaxyEnaQ2Ay-6,640 galaxyEnaQ2Ay-6,878 galaxyEnaQ2Ay-6,937 galaxyEnaQ3Ay-4,69 galaxyEnaQ3Ay-4,96 galaxyEnaQ3Ay-4,345 galaxyEnaQ3Ay-4,613 galaxyEnaQ3Ay-4,640 galaxyEnaQ3Ay-4,878 galaxyEnaQ3Ay-4,937 galaxyEnaQ3Ay-5,69 galaxyEnaQ3Ay-5,96 galaxyEnaQ3Ay-5,345 galaxyEnaQ3Ay-5,613 galaxyEnaQ3Ay-5,640 galaxyEnaQ3Ay-5,878 galaxyEnaQ3Ay-5,937 galaxyEnaQ3Ay-9,69 galaxyEnaQ3Ay-9,96 galaxyEnaQ3Ay-9,345 galaxyEnaQ3Ay-9,613 galaxyEnaQ3Ay-9,640 galaxyEnaQ3Ay-9,878 galaxyEnaQ3Ay-9,937 galaxyEnaQ3B-1-1-7,69 galaxyEnaQ3B-1-1-7,96 galaxyEnaQ3B-1-1-7,345 galaxyEnaQ3B-1-1-7,613 galaxyEnaQ3B-1-1-7,640 galaxyEnaQ3B-1-1-7,878 galaxyEnaQ3B-1-1-7,937 galaxyEnaQ3B-1-617-2,69 galaxyEnaQ3B-1-617-2,96 galaxyEnaQ3B-1-617-2,345 galaxyEnaQ3B-1-617-2,613 galaxyEnaQ3B-1-617-2,640 galaxyEnaQ3B-1-617-2,878 galaxyEnaQ3B-1-617-2,937 mccoy,385 nextstrainParsimony,123 nextstrainParsimony,277 nextstrainSamples,9 nextstrainSamples,101 nextstrainSamples,168 nextstrainSamples,268 nextstrainSamples,351 nextstrainSamples,501 nextstrainSamples,506 nextstrainSamples,541 nextstrainSamples,581 nextstrainSamplesViewAll,9 nextstrainSamplesViewNewClades,9 rapid,63 rappuoli,392 sarsCov2Phylo,355 sarsCov2Phylo,600 sarsCov2PhyloPub,384 sarsCov2PhyloPub,540 sarsCov2PhyloPub,627 sarsCov2PhyloPub,822 sarsCov2PhyloPub,1237 treangen,228 variantMuts,812 sampledate multiz7way,695 strainCons119way,1044 strainCons44way,992 samples Calu3_07hpi,270 ORFs,268 Q0_tracks,174 Q0_tracks,208 Q0_tracks,295 Q0_tracks,436 Q0_tracks,599 Q0_tracks,688 Q0_tracks,745 Q0_tracks,1016 Q0_tracks,1043 Q1_tracks,176 Q1_tracks,210 Q1_tracks,297 Q1_tracks,438 Q1_tracks,601 Q1_tracks,690 Q1_tracks,747 Q1_tracks,1018 Q1_tracks,1045 Q2_tracks,176 Q2_tracks,210 Q2_tracks,297 Q2_tracks,438 Q2_tracks,601 Q2_tracks,690 Q2_tracks,747 Q2_tracks,1018 Q2_tracks,1045 Q3_tracks,176 Q3_tracks,210 Q3_tracks,297 Q3_tracks,438 Q3_tracks,601 Q3_tracks,690 Q3_tracks,747 Q3_tracks,1018 Q3_tracks,1045 Vero6_05hpi,270 Vero6_24hpi,270 bloomEscMabAvg,17 bloomEscSerumAvg,16 bloomEscTop,19 cd8escape,142 galaxyEna,176 galaxyEna,210 galaxyEna,297 galaxyEna,438 galaxyEna,601 galaxyEna,690 galaxyEna,747 galaxyEna,1018 galaxyEna,1045 galaxyEnaQ0Ba-1,172 galaxyEnaQ0Ba-1,206 galaxyEnaQ0Ba-1,293 galaxyEnaQ0Ba-1,434 galaxyEnaQ0Ba-1,597 galaxyEnaQ0Ba-1,686 galaxyEnaQ0Ba-1,743 galaxyEnaQ0Ba-1,1014 galaxyEnaQ0Ba-1,1041 galaxyEnaQ0Ba-1-1,172 galaxyEnaQ0Ba-1-1,206 galaxyEnaQ0Ba-1-1,293 galaxyEnaQ0Ba-1-1,434 galaxyEnaQ0Ba-1-1,597 galaxyEnaQ0Ba-1-1,686 galaxyEnaQ0Ba-1-1,743 galaxyEnaQ0Ba-1-1,1014 galaxyEnaQ0Ba-1-1,1041 galaxyEnaQ0Ba-1-1-11,172 galaxyEnaQ0Ba-1-1-11,206 galaxyEnaQ0Ba-1-1-11,293 galaxyEnaQ0Ba-1-1-11,434 galaxyEnaQ0Ba-1-1-11,597 galaxyEnaQ0Ba-1-1-11,686 galaxyEnaQ0Ba-1-1-11,743 galaxyEnaQ0Ba-1-1-11,1014 galaxyEnaQ0Ba-1-1-11,1041 galaxyEnaQ0Ba-1-17,172 galaxyEnaQ0Ba-1-17,206 galaxyEnaQ0Ba-1-17,293 galaxyEnaQ0Ba-1-17,434 galaxyEnaQ0Ba-1-17,597 galaxyEnaQ0Ba-1-17,686 galaxyEnaQ0Ba-1-17,743 galaxyEnaQ0Ba-1-17,1014 galaxyEnaQ0Ba-1-17,1041 galaxyEnaQ0Ba-2,172 galaxyEnaQ0Ba-2,206 galaxyEnaQ0Ba-2,293 galaxyEnaQ0Ba-2,434 galaxyEnaQ0Ba-2,597 galaxyEnaQ0Ba-2,686 galaxyEnaQ0Ba-2,743 galaxyEnaQ0Ba-2,1014 galaxyEnaQ0Ba-2,1041 galaxyEnaQ1Ay-4,172 galaxyEnaQ1Ay-4,206 galaxyEnaQ1Ay-4,293 galaxyEnaQ1Ay-4,434 galaxyEnaQ1Ay-4,597 galaxyEnaQ1Ay-4,686 galaxyEnaQ1Ay-4,743 galaxyEnaQ1Ay-4,1014 galaxyEnaQ1Ay-4,1041 galaxyEnaQ1Ay-4-2,172 galaxyEnaQ1Ay-4-2,206 galaxyEnaQ1Ay-4-2,293 galaxyEnaQ1Ay-4-2,434 galaxyEnaQ1Ay-4-2,597 galaxyEnaQ1Ay-4-2,686 galaxyEnaQ1Ay-4-2,743 galaxyEnaQ1Ay-4-2,1014 galaxyEnaQ1Ay-4-2,1041 galaxyEnaQ1Ay-4-2-2,172 galaxyEnaQ1Ay-4-2-2,206 galaxyEnaQ1Ay-4-2-2,293 galaxyEnaQ1Ay-4-2-2,434 galaxyEnaQ1Ay-4-2-2,597 galaxyEnaQ1Ay-4-2-2,686 galaxyEnaQ1Ay-4-2-2,743 galaxyEnaQ1Ay-4-2-2,1014 galaxyEnaQ1Ay-4-2-2,1041 galaxyEnaQ1Ay-43,172 galaxyEnaQ1Ay-43,206 galaxyEnaQ1Ay-43,293 galaxyEnaQ1Ay-43,434 galaxyEnaQ1Ay-43,597 galaxyEnaQ1Ay-43,686 galaxyEnaQ1Ay-43,743 galaxyEnaQ1Ay-43,1014 galaxyEnaQ1Ay-43,1041 galaxyEnaQ1Ba-1-17,172 galaxyEnaQ1Ba-1-17,206 galaxyEnaQ1Ba-1-17,293 galaxyEnaQ1Ba-1-17,434 galaxyEnaQ1Ba-1-17,597 galaxyEnaQ1Ba-1-17,686 galaxyEnaQ1Ba-1-17,743 galaxyEnaQ1Ba-1-17,1014 galaxyEnaQ1Ba-1-17,1041 galaxyEnaQ2Ay-120,172 galaxyEnaQ2Ay-120,206 galaxyEnaQ2Ay-120,293 galaxyEnaQ2Ay-120,434 galaxyEnaQ2Ay-120,597 galaxyEnaQ2Ay-120,686 galaxyEnaQ2Ay-120,743 galaxyEnaQ2Ay-120,1014 galaxyEnaQ2Ay-120,1041 galaxyEnaQ2Ay-122,172 galaxyEnaQ2Ay-122,206 galaxyEnaQ2Ay-122,293 galaxyEnaQ2Ay-122,434 galaxyEnaQ2Ay-122,597 galaxyEnaQ2Ay-122,686 galaxyEnaQ2Ay-122,743 galaxyEnaQ2Ay-122,1014 galaxyEnaQ2Ay-122,1041 galaxyEnaQ2Ay-4,172 galaxyEnaQ2Ay-4,206 galaxyEnaQ2Ay-4,293 galaxyEnaQ2Ay-4,434 galaxyEnaQ2Ay-4,597 galaxyEnaQ2Ay-4,686 galaxyEnaQ2Ay-4,743 galaxyEnaQ2Ay-4,1014 galaxyEnaQ2Ay-4,1041 galaxyEnaQ2Ay-5,172 galaxyEnaQ2Ay-5,206 galaxyEnaQ2Ay-5,293 galaxyEnaQ2Ay-5,434 galaxyEnaQ2Ay-5,597 galaxyEnaQ2Ay-5,686 galaxyEnaQ2Ay-5,743 galaxyEnaQ2Ay-5,1014 galaxyEnaQ2Ay-5,1041 galaxyEnaQ2Ay-6,172 galaxyEnaQ2Ay-6,206 galaxyEnaQ2Ay-6,293 galaxyEnaQ2Ay-6,434 galaxyEnaQ2Ay-6,597 galaxyEnaQ2Ay-6,686 galaxyEnaQ2Ay-6,743 galaxyEnaQ2Ay-6,1014 galaxyEnaQ2Ay-6,1041 galaxyEnaQ3Ay-4,172 galaxyEnaQ3Ay-4,206 galaxyEnaQ3Ay-4,293 galaxyEnaQ3Ay-4,434 galaxyEnaQ3Ay-4,597 galaxyEnaQ3Ay-4,686 galaxyEnaQ3Ay-4,743 galaxyEnaQ3Ay-4,1014 galaxyEnaQ3Ay-4,1041 galaxyEnaQ3Ay-5,172 galaxyEnaQ3Ay-5,206 galaxyEnaQ3Ay-5,293 galaxyEnaQ3Ay-5,434 galaxyEnaQ3Ay-5,597 galaxyEnaQ3Ay-5,686 galaxyEnaQ3Ay-5,743 galaxyEnaQ3Ay-5,1014 galaxyEnaQ3Ay-5,1041 galaxyEnaQ3Ay-9,172 galaxyEnaQ3Ay-9,206 galaxyEnaQ3Ay-9,293 galaxyEnaQ3Ay-9,434 galaxyEnaQ3Ay-9,597 galaxyEnaQ3Ay-9,686 galaxyEnaQ3Ay-9,743 galaxyEnaQ3Ay-9,1014 galaxyEnaQ3Ay-9,1041 galaxyEnaQ3B-1-1-7,172 galaxyEnaQ3B-1-1-7,206 galaxyEnaQ3B-1-1-7,293 galaxyEnaQ3B-1-1-7,434 galaxyEnaQ3B-1-1-7,597 galaxyEnaQ3B-1-1-7,686 galaxyEnaQ3B-1-1-7,743 galaxyEnaQ3B-1-1-7,1014 galaxyEnaQ3B-1-1-7,1041 galaxyEnaQ3B-1-617-2,172 galaxyEnaQ3B-1-617-2,206 galaxyEnaQ3B-1-617-2,293 galaxyEnaQ3B-1-617-2,434 galaxyEnaQ3B-1-617-2,597 galaxyEnaQ3B-1-617-2,686 galaxyEnaQ3B-1-617-2,743 galaxyEnaQ3B-1-617-2,1014 galaxyEnaQ3B-1-617-2,1041 nextstrainFreq,126 nextstrainFreqAll,4 nextstrainFreqViewAll,2 nextstrainParsimony,35 nextstrainParsimony,226 nextstrainSamples,32 nextstrainSamples,153 nextstrainSamples,250 nextstrainSamples,275 nextstrainSamples,284 nextstrainSamples,333 nextstrainSamples,336 nextstrainSamples,364 nextstrainSamples,375 nextstrainSamples,387 nextstrainSamples,462 nextstrainSamples,486 nextstrainSamples,520 nextstrainSamples,571 nextstrainSamples19A,13 nextstrainSamples19B,13 nextstrainSamples20A,13 nextstrainSamples20B,13 nextstrainSamples20C,13 nextstrainSamples20D,13 nextstrainSamples20F,13 nextstrainSamples20G,13 nextstrainSamples21A_Delta,15 nextstrainSamples21B_Kappa,15 nextstrainSamples21D_Eta,15 nextstrainSamples21E_Theta,15 nextstrainSamples21F_Iota,15 nextstrainSamples21G_Lambda,15 nextstrainSamples21H_Mu,15 nextstrainSamples21I_Delta,15 nextstrainSamples21J_Delta,15 nextstrainSamplesAll,10 nextstrainSamplesRb,13 nextstrainSamplesViewAll,2 pbmShanghai,305 problematicSites,392 sarsCov2Phylo,54 sarsCov2Phylo,338 sarsCov2Phylo,341 sarsCov2Phylo,368 sarsCov2Phylo,379 sarsCov2Phylo,391 sarsCov2Phylo,495 sarsCov2Phylo,516 sarsCov2Phylo,524 sarsCov2Phylo,642 sarsCov2Phylo,793 sarsCov2Phylo,799 sarsCov2PhyloPub,68 sarsCov2PhyloPub,349 sarsCov2PhyloPub,352 sarsCov2PhyloPub,397 sarsCov2PhyloPub,408 sarsCov2PhyloPub,420 sarsCov2PhyloPub,524 sarsCov2PhyloPub,549 sarsCov2PhyloPub,666 sarsCov2PhyloPub,719 vaccines,223 weizmanOrfs,276 sampling augustusGene,129 sanjana crisprDet,115 sanjanalab cas13Crispr,123 santa epitopes,315 strainCons44way,2268 santrupti rosettaMhc,367 sapoval treangen,69 treangen,155 treangen,291 sarbecovirus PhyloCSF_smooth,409 PhyloCSF_smooth,427 PhyloCSF_smooth,787 PhyloCSFpower,424 PhyloCSFpower,442 PhyloCSFpower,764 phyloGenes,23 phyloGenes,604 primers,163 rfam,106 sarbecovirus-3utr rfam,29 rfam,81 sarbecovirus-5utr rfam,28 rfam,79 sars cas13Crispr,98 epitopes,262 pdb,53 strainCons44way,1003 strainCons44way,1007 strainCons44way,1011 strainCons44way,1021 strainCons44way,1029 strainCons44way,1034 strainCons44way,1098 transcriptome,275 sars-cov M1_library,2 M1_library,8 M2_library,2 M2_library,8 cas13Crispr,205 cas13Crispr,212 cas13Crispr,266 cas13Crispr,296 epitopes,232 phyloGenes,283 phyloGenes,299 potPathoIndel,37 primers,215 targets,45 targets,51 targets,62 targets,151 targets,177 targets,192 sars-cov-2 Calu3_07hpi,86 Calu3_07hpi,102 Calu3_07hpi,372 IgG_Z-score-_COVID-19_patients,32 IgG_Z-score-_COVID-19_patients,427 IgM_Z-score-_COVID-19_patients,32 IgM_Z-score-_COVID-19_patients,427 M1_library,12 M2_library,12 ORFs,84 ORFs,100 ORFs,370 PhyloCSF_smooth,402 PhyloCSF_smooth,794 PhyloCSFpower,417 PhyloCSFpower,771 Q0_tracks,25 Q0_tracks,278 Q0_tracks,294 Q0_tracks,1156 Q0_tracks,1345 Q1_tracks,27 Q1_tracks,280 Q1_tracks,296 Q1_tracks,1158 Q1_tracks,1347 Q2_tracks,27 Q2_tracks,280 Q2_tracks,296 Q2_tracks,1158 Q2_tracks,1347 Q3_tracks,27 Q3_tracks,280 Q3_tracks,296 Q3_tracks,1158 Q3_tracks,1347 Starr_Bloom,264 Starr_Bloom_bind,258 Vero6_05hpi,86 Vero6_05hpi,102 Vero6_05hpi,372 Vero6_24hpi,86 Vero6_24hpi,102 Vero6_24hpi,372 abEscape,710 abEscape,753 abEscape,813 abEscape,883 addgene,30 addgene,171 artic,23 articV4,23 articV4_1,23 bloomEscMabAvg,714 bloomEscMabAvg,757 bloomEscMabAvg,817 bloomEscMabAvg,887 bloomEscMax,720 bloomEscMax,763 bloomEscMax,823 bloomEscMax,893 bloomEscSerumAvg,715 bloomEscSerumAvg,758 bloomEscSerumAvg,818 bloomEscSerumAvg,888 bloomEscTop,718 bloomEscTop,761 bloomEscTop,821 bloomEscTop,891 bpmIggCovidSum,41 bpmIggCovidSum,436 bpmIgmCovidSum,41 bpmIgmCovidSum,436 cas13Crispr,38 cas13Crispr,165 cas13Crispr,174 cas13Crispr,204 cas13Crispr,216 cas13Crispr,251 cas13Crispr,288 cd8escape,49 cd8escape,71 cd8escape,213 escape,717 escape,760 escape,820 escape,890 galaxyEna,7 galaxyEna,27 galaxyEna,280 galaxyEna,296 galaxyEna,1158 galaxyEna,1347 galaxyEnaQ0Ba-1,23 galaxyEnaQ0Ba-1,276 galaxyEnaQ0Ba-1,292 galaxyEnaQ0Ba-1,1154 galaxyEnaQ0Ba-1,1343 galaxyEnaQ0Ba-1-1,23 galaxyEnaQ0Ba-1-1,276 galaxyEnaQ0Ba-1-1,292 galaxyEnaQ0Ba-1-1,1154 galaxyEnaQ0Ba-1-1,1343 galaxyEnaQ0Ba-1-1-11,23 galaxyEnaQ0Ba-1-1-11,276 galaxyEnaQ0Ba-1-1-11,292 galaxyEnaQ0Ba-1-1-11,1154 galaxyEnaQ0Ba-1-1-11,1343 galaxyEnaQ0Ba-1-17,23 galaxyEnaQ0Ba-1-17,276 galaxyEnaQ0Ba-1-17,292 galaxyEnaQ0Ba-1-17,1154 galaxyEnaQ0Ba-1-17,1343 galaxyEnaQ0Ba-2,23 galaxyEnaQ0Ba-2,276 galaxyEnaQ0Ba-2,292 galaxyEnaQ0Ba-2,1154 galaxyEnaQ0Ba-2,1343 galaxyEnaQ1Ay-4,23 galaxyEnaQ1Ay-4,276 galaxyEnaQ1Ay-4,292 galaxyEnaQ1Ay-4,1154 galaxyEnaQ1Ay-4,1343 galaxyEnaQ1Ay-4-2,23 galaxyEnaQ1Ay-4-2,276 galaxyEnaQ1Ay-4-2,292 galaxyEnaQ1Ay-4-2,1154 galaxyEnaQ1Ay-4-2,1343 galaxyEnaQ1Ay-4-2-2,23 galaxyEnaQ1Ay-4-2-2,276 galaxyEnaQ1Ay-4-2-2,292 galaxyEnaQ1Ay-4-2-2,1154 galaxyEnaQ1Ay-4-2-2,1343 galaxyEnaQ1Ay-43,23 galaxyEnaQ1Ay-43,276 galaxyEnaQ1Ay-43,292 galaxyEnaQ1Ay-43,1154 galaxyEnaQ1Ay-43,1343 galaxyEnaQ1Ba-1-17,23 galaxyEnaQ1Ba-1-17,276 galaxyEnaQ1Ba-1-17,292 galaxyEnaQ1Ba-1-17,1154 galaxyEnaQ1Ba-1-17,1343 galaxyEnaQ2Ay-120,23 galaxyEnaQ2Ay-120,276 galaxyEnaQ2Ay-120,292 galaxyEnaQ2Ay-120,1154 galaxyEnaQ2Ay-120,1343 galaxyEnaQ2Ay-122,23 galaxyEnaQ2Ay-122,276 galaxyEnaQ2Ay-122,292 galaxyEnaQ2Ay-122,1154 galaxyEnaQ2Ay-122,1343 galaxyEnaQ2Ay-4,23 galaxyEnaQ2Ay-4,276 galaxyEnaQ2Ay-4,292 galaxyEnaQ2Ay-4,1154 galaxyEnaQ2Ay-4,1343 galaxyEnaQ2Ay-5,23 galaxyEnaQ2Ay-5,276 galaxyEnaQ2Ay-5,292 galaxyEnaQ2Ay-5,1154 galaxyEnaQ2Ay-5,1343 galaxyEnaQ2Ay-6,23 galaxyEnaQ2Ay-6,276 galaxyEnaQ2Ay-6,292 galaxyEnaQ2Ay-6,1154 galaxyEnaQ2Ay-6,1343 galaxyEnaQ3Ay-4,23 galaxyEnaQ3Ay-4,276 galaxyEnaQ3Ay-4,292 galaxyEnaQ3Ay-4,1154 galaxyEnaQ3Ay-4,1343 galaxyEnaQ3Ay-5,23 galaxyEnaQ3Ay-5,276 galaxyEnaQ3Ay-5,292 galaxyEnaQ3Ay-5,1154 galaxyEnaQ3Ay-5,1343 galaxyEnaQ3Ay-9,23 galaxyEnaQ3Ay-9,276 galaxyEnaQ3Ay-9,292 galaxyEnaQ3Ay-9,1154 galaxyEnaQ3Ay-9,1343 galaxyEnaQ3B-1-1-7,23 galaxyEnaQ3B-1-1-7,276 galaxyEnaQ3B-1-1-7,292 galaxyEnaQ3B-1-1-7,1154 galaxyEnaQ3B-1-1-7,1343 galaxyEnaQ3B-1-617-2,23 galaxyEnaQ3B-1-617-2,276 galaxyEnaQ3B-1-617-2,292 galaxyEnaQ3B-1-617-2,1154 galaxyEnaQ3B-1-617-2,1343 gap,17 gold,19 gordon2,49 icshape,24 icshape,215 kimIvtCov,40 kimIvtCov,188 kimNp,120 kimRnaMod,245 kimTranscripts,28 kimTranscripts,39 kimTranscripts,475 mccoy,710 mccoy,753 mccoy,813 mccoy,883 microdel,77 microdel,92 microdel,295 multiz7way,29 multiz7way,33 multiz7way,96 multiz7way,356 ncbiGeneBGP,21 ncbiProducts,24 nextstrainClade,66 nextstrainClade,122 nextstrainClade,238 nextstrainFreq,27 nextstrainFreq,60 nextstrainFreq,134 nextstrainFreq,373 nextstrainGene,92 nextstrainGene,187 nextstrainParsimony,25 nextstrainParsimony,77 nextstrainParsimony,289 nextstrainSamples,22 nextstrainSamples,121 nextstrainSamples,399 nextstrainSamples,602 nextstrainSamples,663 nextstrainSamples,735 pbm,41 pbm,436 pbmShanghai,519 phyloGenes,17 phyloGenes,42 phyloGenes,479 phyloGenes,575 phyloGenes,594 pond,83 pond,237 pond,247 poranHla1,284 poranHla2,284 potPathoIndel,26 potPathoIndel,225 primers,192 primers,216 primers,226 primers,260 problematicSites,30 problematicSites,91 problematicSites,314 problematicSites,553 problematicSites,604 pyle,34 pyle,218 pyle,295 pyle,328 rapid,24 rapid,41 rapid,60 rapid,353 rappuoli,717 rappuoli,760 rappuoli,820 rappuoli,890 recomb,31 recomb,184 recomb,349 rfam,10 rnaStructRangan,117 rosettaMhc,41 rosettaMhc,81 rosettaMhc,165 rosettaMhc,257 sarsCov2Phylo,28 sarsCov2Phylo,403 sarsCov2Phylo,805 sarsCov2Phylo,957 sarsCov2Phylo,1000 sarsCov2Phylo,1065 sarsCov2Phylo,1115 sarsCov2PhyloPub,26 sarsCov2PhyloPub,432 sarsCov2PhyloPub,1045 sarsCov2PhyloPub,1077 sarsCov2PhyloPub,1120 sarsCov2PhyloPub,1185 sarsCov2PhyloPub,1248 spikeMuts,16 spikeMuts,114 spikeMuts,388 spikeMuts,410 strainCons119way,54 strainCons119way,57 strainCons119way,445 strainCons119way,698 strainCons44way,51 strainCons44way,393 strainCons44way,646 strainCons44way,2256 swift,21 targets,23 targets,71 targets,100 targets,168 targets,196 targets,220 targets,236 transcriptome,20 transcriptome,31 transcriptome,163 transcriptome,166 transcriptome,481 treangen,44 treangen,77 treangen,205 treangen,318 unipCov2AliSwissprot,55 vaccines,25 vaccines,143 vaccines,185 vaccines,451 vaccines,540 vaccines,558 variantMuts,34 variantMuts,57 variantMuts,784 variantMuts,836 variantMuts,871 variantMuts,1028 variantMuts,1264 variantMuts,1307 variantMuts,1349 variantMuts,1384 variantMuts,1404 variantMuts,1423 variantMuts,1439 weizmanOrfs,92 weizmanOrfs,108 weizmanOrfs,378 sars-cov-2-human gordon2,26 gordon2,258 sars-cov-2.primer.bed articV4,59 articV4_1,70 sars-cov-2_microdeletions microdel,213 sars-cov-2_shape_map_structure pyle,276 sars-cov2 microdel,249 primers,160 spikeMuts,99 strainCons119way,15 strainCons119wayViewalign,14 strainCons119wayViewphastcons,15 strainCons119wayViewphyloP,15 sars-cov2-spike-encoding vaccines,518 sars-like strainCons44way,1048 strainCons44way,1055 strainCons44way,1070 strainCons44way,1080 strainCons44way,1088 strainCons44way,1092 strainCons44way,1102 strainCons44way,1112 strainCons44way,1116 strainCons44way,1120 strainCons44way,1128 strainCons44way,1132 strainCons44way,1148 strainCons44way,1152 sars-related rnaStructRangan,119 strainCons44way,1059 sars133 pyle,231 sars_cov_1 multiz7way,773 sars_cov_2 multiz7way,772 sarscov2phylo sarsCov2Phylo,80 sarsCov2Phylo,570 sarsCov2Phylo,682 sarsCov2Phylo,866 sarsCov2Phylo,929 sarsCov2PhyloPub,92 sarsCov2PhyloPub,595 sarsCov2PhyloPub,706 sarsCov2PhyloPub,890 sarsCov2PhyloPub,972 variantMuts,845 variantMuts,1203 sarscov2phylo.pub.ft.nh sarsCov2PhyloPub,863 sato phyloGenes,560 save cpgIslandExt,582 cpgIslandExtUnmasked,585 cpgIslandSuper,582 sax2011 strainCons119way,1375 say nextstrainSamples,826 sc2013 strainCons119way,1465 sc2018 strainCons44way,1107 scaffold gold,80 gold,118 scale sarsCov2PhyloFull,15 sarsCov2PhyloPubAllFull,15 scaled pbmShanghai,246 scanned potPathoIndel,150 scanning Starr_Bloom,8 Starr_Bloom,21 Starr_Bloom,262 Starr_Bloom_bind,8 Starr_Bloom_bind,22 Starr_Bloom_bind,256 abEscape,68 bloomEscMabAvg,72 bloomEscMax,78 bloomEscSerumAvg,73 bloomEscTop,76 escape,75 mccoy,68 rappuoli,75 sch windowmaskerSdust,94 scheduled pond,48 scheib unipCov2AliSwissprot,468 unipCov2Chain,697 unipCov2DisulfBond,693 unipCov2Domain,692 unipCov2Interest,351 unipCov2LocCytopl,692 unipCov2LocExtra,692 unipCov2LocSignal,693 unipCov2LocTransMemb,693 unipCov2Modif,696 unipCov2Mut,693 unipCov2Other,693 unipCov2Repeat,691 unipCov2Struct,695 scheme Q0_tracks,120 Q0_tracks,148 Q1_tracks,122 Q1_tracks,150 Q2_tracks,122 Q2_tracks,150 Q3_tracks,122 Q3_tracks,150 galaxyEna,122 galaxyEna,150 galaxyEnaQ0Ba-1,118 galaxyEnaQ0Ba-1,146 galaxyEnaQ0Ba-1-1,118 galaxyEnaQ0Ba-1-1,146 galaxyEnaQ0Ba-1-1-11,118 galaxyEnaQ0Ba-1-1-11,146 galaxyEnaQ0Ba-1-17,118 galaxyEnaQ0Ba-1-17,146 galaxyEnaQ0Ba-2,118 galaxyEnaQ0Ba-2,146 galaxyEnaQ1Ay-4,118 galaxyEnaQ1Ay-4,146 galaxyEnaQ1Ay-4-2,118 galaxyEnaQ1Ay-4-2,146 galaxyEnaQ1Ay-4-2-2,118 galaxyEnaQ1Ay-4-2-2,146 galaxyEnaQ1Ay-43,118 galaxyEnaQ1Ay-43,146 galaxyEnaQ1Ba-1-17,118 galaxyEnaQ1Ba-1-17,146 galaxyEnaQ2Ay-120,118 galaxyEnaQ2Ay-120,146 galaxyEnaQ2Ay-122,118 galaxyEnaQ2Ay-122,146 galaxyEnaQ2Ay-4,118 galaxyEnaQ2Ay-4,146 galaxyEnaQ2Ay-5,118 galaxyEnaQ2Ay-5,146 galaxyEnaQ2Ay-6,118 galaxyEnaQ2Ay-6,146 galaxyEnaQ3Ay-4,118 galaxyEnaQ3Ay-4,146 galaxyEnaQ3Ay-5,118 galaxyEnaQ3Ay-5,146 galaxyEnaQ3Ay-9,118 galaxyEnaQ3Ay-9,146 galaxyEnaQ3B-1-1-7,118 galaxyEnaQ3B-1-1-7,146 galaxyEnaQ3B-1-617-2,118 galaxyEnaQ3B-1-617-2,146 nextstrainSamples,596 rapid,127 sarsCov2PhyloPub,148 spikeMuts,285 schemes sarsCov2Phylo,142 scheuermann epitopes,324 schiller rfam,117 schmelter ncbiGeneBGP,180 ncbiProducts,196 primers,369 schmidt nextstrainSamples,1055 school vaccines,54 vaccines,70 vaccines,623 schwartz multiz7way,833 multiz7way,1245 strainCons119way,2211 strainCons119way,2623 strainCons44way,1806 strainCons44way,2218 sci cd8escape,13 cd8escape,223 multiz7way,1152 strainCons119way,2530 strainCons44way,2125 science IgG_Z-score-_COVID-19_patients,441 IgM_Z-score-_COVID-19_patients,441 bpmIggCovidSum,450 bpmIgmCovidSum,450 genscan,203 multiz7way,965 pbm,450 strainCons119way,2343 strainCons44way,1938 sciences potPathoIndel,236 scientific unipCov2AliSwissprot,65 unipCov2Chain,35 unipCov2DisulfBond,31 unipCov2Domain,30 unipCov2Interest,37 unipCov2LocCytopl,30 unipCov2LocExtra,30 unipCov2LocSignal,31 unipCov2LocTransMemb,31 unipCov2Modif,34 unipCov2Mut,31 unipCov2Other,31 unipCov2Repeat,29 unipCov2Struct,33 score A_120Max,9 A_120Total,9 A_21Max,9 A_21Total,9 A_45Max,9 A_45Total,9 B_113Max,9 B_113Total,9 B_26Max,9 B_26Total,9 COV2-2050Max,7 COV2-2050Total,8 COV2-2082Max,7 COV2-2082Total,8 COV2-2094Max,7 COV2-2094Total,8 COV2-2096Max,7 COV2-2096Total,8 COV2-2165Max,7 COV2-2165Total,8 COV2-2479Max,7 COV2-2479Total,8 COV2-2499Max,7 COV2-2499Total,8 COV2-2677Max,7 COV2-2677Total,8 COV2-2832Max,7 COV2-2832Total,8 C_104Max,9 C_104Total,9 C_32Max,9 C_32Total,9 D_33Max,9 D_33Total,9 D_76Max,9 D_76Total,9 E_104Max,9 E_104Total,9 E_28Max,9 E_28Total,9 F_115Max,9 F_115Total,9 F_48Max,9 F_48Total,9 G_18Max,9 G_18Total,9 G_94Max,9 G_94Total,9 H_152Max,9 H_152Total,9 H_61Max,9 H_61Total,9 I_102Max,9 I_102Total,9 I_26Max,9 I_26Total,9 IgG_Z-score-_COVID-19_patients,201 IgM_Z-score-_COVID-19_patients,201 J_121Max,9 J_121Total,9 J_15Max,9 J_15Total,9 K_103Max,9 K_103Total,9 K_29Max,9 K_29Total,9 LY-CoV016Max,7 LY-CoV016Total,8 PhyloCSF_smooth,132 PhyloCSF_smooth,151 PhyloCSF_smooth,164 PhyloCSF_smooth,187 PhyloCSF_smooth,234 PhyloCSF_smooth,256 PhyloCSF_smooth,264 PhyloCSF_smooth,333 PhyloCSF_smooth,354 PhyloCSF_smooth,459 PhyloCSF_smooth,477 PhyloCSFpower,147 PhyloCSFpower,166 PhyloCSFpower,179 PhyloCSFpower,202 PhyloCSFpower,249 PhyloCSFpower,271 PhyloCSFpower,279 PhyloCSFpower,303 PhyloCSFpower,348 PhyloCSFpower,369 PhyloCSFpower,474 PhyloCSFpower,492 REGN10933-REGN10987Max,7 REGN10933-REGN10987Total,8 REGN10933Max,7 REGN10933Total,8 REGN10987Max,7 REGN10987Total,8 Starr_Bloom,127 Starr_Bloom,132 Starr_Bloom,138 Starr_Bloom_bind,121 Starr_Bloom_bind,126 Starr_Bloom_bind,132 abEscape,365 abEscape,390 abEscape,479 bloomEscMabAvg,12 bloomEscMabAvg,369 bloomEscMabAvg,394 bloomEscMabAvg,483 bloomEscMax,12 bloomEscMax,375 bloomEscMax,400 bloomEscMax,489 bloomEscSerumAvg,13 bloomEscSerumAvg,370 bloomEscSerumAvg,395 bloomEscSerumAvg,484 bloomEscTop,14 bloomEscTop,373 bloomEscTop,398 bloomEscTop,487 bloomEscTotal,12 bpmIggCovidSum,210 bpmIgmCovidSum,210 crisprDet,134 escape,372 escape,397 escape,486 gordon2,113 gordon2,117 icshape,73 kimTranscripts,172 kimTranscripts,192 kimTranscripts,221 mccoy,365 mccoy,390 mccoy,479 nextstrainParsimony,98 nextstrainParsimony,167 nextstrainParsimony,206 nextstrainParsimony,211 nextstrainParsimony,250 nextstrainParsimony,267 pbm,210 pond,210 poranHla1,61 poranHla1,69 poranHla2,61 poranHla2,69 pyle,82 pyle,117 rCR3022Max,7 rCR3022Total,8 rappuoli,372 rappuoli,397 rappuoli,486 recomb,223 rosettaMhc,220 strainCons119way,2106 strainCons119way,2125 strainCons44way,1701 strainCons44way,1720 unipCov2AliSwissprot,172 unipCov2Chain,425 unipCov2DisulfBond,421 unipCov2Domain,420 unipCov2Interest,101 unipCov2LocCytopl,420 unipCov2LocExtra,420 unipCov2LocSignal,421 unipCov2LocTransMemb,421 unipCov2Modif,424 unipCov2Mut,421 unipCov2Other,421 unipCov2Repeat,419 unipCov2Struct,423 vaccines,286 scored poranHla1,56 poranHla2,56 rosettaMhc,202 scores PhyloCSF_smooth,288 PhyloCSF_smooth,430 PhyloCSF_smooth,561 PhyloCSFpower,445 PhyloCSFpower,576 Starr_Bloom,81 Starr_Bloom_bind,75 abEscape,275 abEscape,442 abEscape,498 bloomEscMabAvg,279 bloomEscMabAvg,446 bloomEscMabAvg,502 bloomEscMax,285 bloomEscMax,452 bloomEscMax,508 bloomEscSerumAvg,280 bloomEscSerumAvg,447 bloomEscSerumAvg,503 bloomEscTop,283 bloomEscTop,450 bloomEscTop,506 bpmIggCovidSum,19 bpmIgmCovidSum,19 escape,282 escape,449 escape,505 gordon2,127 gordon2,243 icshape,28 kimTranscripts,261 mccoy,275 mccoy,442 mccoy,498 nextstrainParsimony,4 nextstrainParsimony,283 nextstrainParsimony,329 rappuoli,282 rappuoli,449 rappuoli,505 strainCons119way,336 strainCons119way,350 strainCons119way,360 strainCons119way,373 strainCons119way,1791 strainCons119way,1879 strainCons119way,1955 strainCons119way,2011 strainCons119way,2038 strainCons119way,2054 strainCons119way,2134 strainCons119way,2142 strainCons119way,2160 strainCons44way,284 strainCons44way,298 strainCons44way,308 strainCons44way,321 strainCons44way,1386 strainCons44way,1474 strainCons44way,1550 strainCons44way,1606 strainCons44way,1633 strainCons44way,1649 strainCons44way,1729 strainCons44way,1737 strainCons44way,1755 vaccines,248 scoring cpgIslandExt,238 cpgIslandExt,251 cpgIslandExtUnmasked,241 cpgIslandExtUnmasked,254 cpgIslandSuper,238 cpgIslandSuper,251 multiz7way,652 multiz7way,846 multiz7way,1218 strainCons119way,1001 strainCons119way,2224 strainCons119way,2596 strainCons44way,949 strainCons44way,1819 strainCons44way,2191 scott multiz7way,832 strainCons119way,2210 strainCons44way,1805 vaccines,508 screen abEscape,160 bloomEscMabAvg,164 bloomEscMax,170 bloomEscSerumAvg,165 bloomEscTop,168 escape,167 mccoy,160 rappuoli,167 spikeMuts,196 screened IgG_Z-score-_COVID-19_patients,45 IgM_Z-score-_COVID-19_patients,45 bpmIggCovidSum,54 bpmIgmCovidSum,54 pbm,54 pbmShanghai,54 scripps variantMuts,1216 script IgG_Z-score-_COVID-19_patients,218 IgM_Z-score-_COVID-19_patients,218 bpmIggCovidSum,227 bpmIgmCovidSum,227 pbm,227 pbmShanghai,374 unipCov2AliSwissprot,249 unipCov2Chain,479 unipCov2DisulfBond,475 unipCov2Domain,474 unipCov2Interest,155 unipCov2LocCytopl,474 unipCov2LocExtra,474 unipCov2LocSignal,475 unipCov2LocTransMemb,475 unipCov2Modif,478 unipCov2Mut,475 unipCov2Other,475 unipCov2Repeat,473 unipCov2Struct,477 variantMuts,842 scripts Q0_tracks,963 Q1_tracks,965 Q2_tracks,965 Q3_tracks,965 galaxyEna,965 galaxyEnaQ0Ba-1,961 galaxyEnaQ0Ba-1-1,961 galaxyEnaQ0Ba-1-1-11,961 galaxyEnaQ0Ba-1-17,961 galaxyEnaQ0Ba-2,961 galaxyEnaQ1Ay-4,961 galaxyEnaQ1Ay-4-2,961 galaxyEnaQ1Ay-4-2-2,961 galaxyEnaQ1Ay-43,961 galaxyEnaQ1Ba-1-17,961 galaxyEnaQ2Ay-120,961 galaxyEnaQ2Ay-122,961 galaxyEnaQ2Ay-4,961 galaxyEnaQ2Ay-5,961 galaxyEnaQ2Ay-6,961 galaxyEnaQ3Ay-4,961 galaxyEnaQ3Ay-5,961 galaxyEnaQ3Ay-9,961 galaxyEnaQ3B-1-1-7,961 galaxyEnaQ3B-1-617-2,961 icshape,117 nextstrainClade,214 nextstrainFreq,206 nextstrainGene,163 nextstrainParsimony,375 primers,351 problematicSites,533 recomb,308 sarsCov2PhyloPub,885 variantMuts,1009 variantMuts,1225 scroll nextstrainParsimony,386 nextstrainSamples,713 nextstrainSamples,977 sd abEscape,874 bloomEscMabAvg,878 bloomEscMax,884 bloomEscSerumAvg,879 bloomEscTop,882 escape,881 mccoy,874 pond,263 rappuoli,881 sdust windowmaskerSdust,2 windowmaskerSdust,8 windowmaskerSdust,68 seal PhyloCSF_smooth,748 PhyloCSFpower,714 sealfon PhyloCSF_smooth,783 multiz7way,937 phyloGenes,519 phyloGenes,589 strainCons119way,2315 strainCons44way,1910 sean abEscape,803 bloomEscMabAvg,807 bloomEscMax,813 bloomEscSerumAvg,808 bloomEscTop,811 escape,810 mccoy,803 rappuoli,810 search Q0_tracks,409 Q0_tracks,422 Q1_tracks,411 Q1_tracks,424 Q2_tracks,411 Q2_tracks,424 Q3_tracks,411 Q3_tracks,424 galaxyEna,411 galaxyEna,424 galaxyEnaQ0Ba-1,407 galaxyEnaQ0Ba-1,420 galaxyEnaQ0Ba-1-1,407 galaxyEnaQ0Ba-1-1,420 galaxyEnaQ0Ba-1-1-11,407 galaxyEnaQ0Ba-1-1-11,420 galaxyEnaQ0Ba-1-17,407 galaxyEnaQ0Ba-1-17,420 galaxyEnaQ0Ba-2,407 galaxyEnaQ0Ba-2,420 galaxyEnaQ1Ay-4,407 galaxyEnaQ1Ay-4,420 galaxyEnaQ1Ay-4-2,407 galaxyEnaQ1Ay-4-2,420 galaxyEnaQ1Ay-4-2-2,407 galaxyEnaQ1Ay-4-2-2,420 galaxyEnaQ1Ay-43,407 galaxyEnaQ1Ay-43,420 galaxyEnaQ1Ba-1-17,407 galaxyEnaQ1Ba-1-17,420 galaxyEnaQ2Ay-120,407 galaxyEnaQ2Ay-120,420 galaxyEnaQ2Ay-122,407 galaxyEnaQ2Ay-122,420 galaxyEnaQ2Ay-4,407 galaxyEnaQ2Ay-4,420 galaxyEnaQ2Ay-5,407 galaxyEnaQ2Ay-5,420 galaxyEnaQ2Ay-6,407 galaxyEnaQ2Ay-6,420 galaxyEnaQ3Ay-4,407 galaxyEnaQ3Ay-4,420 galaxyEnaQ3Ay-5,407 galaxyEnaQ3Ay-5,420 galaxyEnaQ3Ay-9,407 galaxyEnaQ3Ay-9,420 galaxyEnaQ3B-1-1-7,407 galaxyEnaQ3B-1-1-7,420 galaxyEnaQ3B-1-617-2,407 galaxyEnaQ3B-1-617-2,420 rnaStructRangan,40 variantMuts,801 searched potPathoIndel,101 searching cpgIslandExt,230 cpgIslandExtUnmasked,233 cpgIslandSuper,230 searls genscan,191 seasonal nextstrainClade,70 second rapid,85 secondary pyle,30 pyle,194 pyle,213 pyle,291 rfam,90 rnaStructRangan,114 unipCov2Chain,220 unipCov2DisulfBond,216 unipCov2Domain,215 unipCov2LocCytopl,215 unipCov2LocExtra,215 unipCov2LocSignal,216 unipCov2LocTransMemb,216 unipCov2Modif,219 unipCov2Mut,216 unipCov2Other,216 unipCov2Repeat,214 unipCov2Struct,5 unipCov2Struct,218 secreted unipCov2Chain,132 unipCov2DisulfBond,128 unipCov2Domain,127 unipCov2LocCytopl,127 unipCov2LocExtra,127 unipCov2LocSignal,128 unipCov2LocTransMemb,128 unipCov2Modif,131 unipCov2Mut,128 unipCov2Other,128 unipCov2Repeat,126 unipCov2Struct,130 section Calu3_07hpi,303 ORFs,301 Vero6_05hpi,303 Vero6_24hpi,303 genscan,153 multiz7way,438 rosettaMhc,340 rosettaMhc,360 strainCons119way,788 strainCons44way,736 vaccines,123 weizmanOrfs,309 sections vaccines,155 see Calu3_07hpi,297 IgG_Z-score-_COVID-19_patients,128 IgM_Z-score-_COVID-19_patients,128 ORFs,295 PhyloCSF_smooth,176 PhyloCSFpower,191 Q0_tracks,91 Q0_tracks,768 Q1_tracks,93 Q1_tracks,770 Q2_tracks,93 Q2_tracks,770 Q3_tracks,93 Q3_tracks,770 Starr_Bloom,145 Starr_Bloom_bind,139 Vero6_05hpi,297 Vero6_24hpi,297 addgene,66 augustusGene,42 bpmIggCovidSum,137 bpmIgmCovidSum,137 galaxyEna,93 galaxyEna,770 galaxyEnaQ0Ba-1,89 galaxyEnaQ0Ba-1,766 galaxyEnaQ0Ba-1-1,89 galaxyEnaQ0Ba-1-1,766 galaxyEnaQ0Ba-1-1-11,89 galaxyEnaQ0Ba-1-1-11,766 galaxyEnaQ0Ba-1-17,89 galaxyEnaQ0Ba-1-17,766 galaxyEnaQ0Ba-2,89 galaxyEnaQ0Ba-2,766 galaxyEnaQ1Ay-4,89 galaxyEnaQ1Ay-4,766 galaxyEnaQ1Ay-4-2,89 galaxyEnaQ1Ay-4-2,766 galaxyEnaQ1Ay-4-2-2,89 galaxyEnaQ1Ay-4-2-2,766 galaxyEnaQ1Ay-43,89 galaxyEnaQ1Ay-43,766 galaxyEnaQ1Ba-1-17,89 galaxyEnaQ1Ba-1-17,766 galaxyEnaQ2Ay-120,89 galaxyEnaQ2Ay-120,766 galaxyEnaQ2Ay-122,89 galaxyEnaQ2Ay-122,766 galaxyEnaQ2Ay-4,89 galaxyEnaQ2Ay-4,766 galaxyEnaQ2Ay-5,89 galaxyEnaQ2Ay-5,766 galaxyEnaQ2Ay-6,89 galaxyEnaQ2Ay-6,766 galaxyEnaQ3Ay-4,89 galaxyEnaQ3Ay-4,766 galaxyEnaQ3Ay-5,89 galaxyEnaQ3Ay-5,766 galaxyEnaQ3Ay-9,89 galaxyEnaQ3Ay-9,766 galaxyEnaQ3B-1-1-7,89 galaxyEnaQ3B-1-1-7,766 galaxyEnaQ3B-1-617-2,89 galaxyEnaQ3B-1-617-2,766 genscan,57 iedb,68 kimRnaMod,71 multiz7way,319 nextstrainClade,87 nextstrainFreq,334 nextstrainSamples,124 pbm,137 pbmShanghai,194 pbmShanghai,281 phyloGenes,61 phyloGenes,70 phyloGenes,446 poranHla1,78 poranHla2,78 primers,116 pyle,236 resistPred,166 rosettaMhc,196 sarsCov2Phylo,67 sarsCov2Phylo,680 sarsCov2PhyloPub,81 sarsCov2PhyloPub,704 sarsCov2PhyloPub,740 simpleRepeat,63 transcriptome,215 treangen,192 unipCov2AliSwissprot,130 unipCov2Chain,336 unipCov2DisulfBond,332 unipCov2Domain,331 unipCov2Interest,73 unipCov2LocCytopl,331 unipCov2LocExtra,331 unipCov2LocSignal,332 unipCov2LocTransMemb,332 unipCov2Modif,335 unipCov2Mut,332 unipCov2Other,332 unipCov2Repeat,330 unipCov2Struct,334 vaccines,87 vaccines,464 weizmanOrfs,303 seed multiz7way,630 strainCons119way,980 strainCons44way,928 seen Q0_tracks,1084 Q1_tracks,1086 Q2_tracks,1086 Q3_tracks,1086 galaxyEna,1086 galaxyEnaQ0Ba-1,1082 galaxyEnaQ0Ba-1-1,1082 galaxyEnaQ0Ba-1-1-11,1082 galaxyEnaQ0Ba-1-17,1082 galaxyEnaQ0Ba-2,1082 galaxyEnaQ1Ay-4,1082 galaxyEnaQ1Ay-4-2,1082 galaxyEnaQ1Ay-4-2-2,1082 galaxyEnaQ1Ay-43,1082 galaxyEnaQ1Ba-1-17,1082 galaxyEnaQ2Ay-120,1082 galaxyEnaQ2Ay-122,1082 galaxyEnaQ2Ay-4,1082 galaxyEnaQ2Ay-5,1082 galaxyEnaQ2Ay-6,1082 galaxyEnaQ3Ay-4,1082 galaxyEnaQ3Ay-5,1082 galaxyEnaQ3Ay-9,1082 galaxyEnaQ3B-1-1-7,1082 galaxyEnaQ3B-1-617-2,1082 strainCons119way,2170 strainCons44way,1765 segment cpgIslandExt,254 cpgIslandExt,299 cpgIslandExtUnmasked,257 cpgIslandExtUnmasked,302 cpgIslandSuper,254 cpgIslandSuper,299 strainCons119way,769 strainCons44way,717 segments cpgIslandExt,252 cpgIslandExtUnmasked,255 cpgIslandSuper,252 recomb,197 strainCons119way,2082 strainCons44way,1677 seismic IgG_Z-score-_COVID-19_patients,241 IgM_Z-score-_COVID-19_patients,241 bpmIggCovidSum,250 bpmIgmCovidSum,250 pbm,250 select genscan,90 multiz7way,270 multiz7way,424 multiz7way,446 strainCons119way,619 strainCons119way,774 strainCons119way,796 strainCons119way,1755 strainCons44way,567 strainCons44way,722 strainCons44way,744 strainCons44way,1350 selected cas13Crispr,281 nextstrainSamples,630 pond,170 selection Negative_Selection,2 Negative_Selection,6 Positive_Selection,2 Positive_Selection,6 abEscape,119 abEscape,159 bloomEscMabAvg,123 bloomEscMabAvg,163 bloomEscMax,129 bloomEscMax,169 bloomEscSerumAvg,124 bloomEscSerumAvg,164 bloomEscTop,127 bloomEscTop,167 escape,126 escape,166 mccoy,119 mccoy,159 multiz7way,255 pond,2 pond,5 pond,78 pond,97 pond,144 pond,201 pond,234 pond,244 pond,274 problematicSites,24 rappuoli,126 rappuoli,166 strainCons119way,281 strainCons119way,380 strainCons119way,604 strainCons44way,229 strainCons44way,328 strainCons44way,552 selective cpgIslandExt,122 cpgIslandExtUnmasked,125 cpgIslandSuper,122 pyle,43 semi-markov augustusGene,117 sensitive strainCons119way,254 strainCons44way,202 sep Calu3_07hpi,375 ORFs,373 Starr_Bloom,277 Starr_Bloom_bind,271 Vero6_05hpi,375 Vero6_24hpi,375 multiz7way,967 multiz7way,1157 recomb,354 strainCons119way,2345 strainCons119way,2535 strainCons44way,1940 strainCons44way,2130 variantAaMutsV2_B_1_525,15 variantAaMutsV2_B_1_526,16 variantAaMutsV2_B_1_617_1,16 variantAaMutsV2_B_1_617_2,16 variantAaMutsV2_B_1_621,16 variantAaMutsV2_C_37,16 variantAaMuts_BA_2,13 variantAaMuts_BA_2_12_1,13 variantAaMuts_BA_2_75,14 variantAaMuts_BQ_1,13 variantAaMuts_CH_1_1,13 variantAaMuts_EG_5_1,13 variantAaMuts_XBB,13 variantAaMuts_XBB_1_16,13 variantAaMuts_XBB_1_5,13 variantAaMuts_XBB_1_9,13 variantAaMuts_XBB_2_3,13 variantMuts,273 variantMuts,538 variantMuts,1457 variantNucMutsV2_B_1_525,14 variantNucMutsV2_B_1_526,15 variantNucMutsV2_B_1_617_1,15 variantNucMutsV2_B_1_617_2,15 variantNucMutsV2_B_1_621,15 variantNucMutsV2_C_37,15 variantNucMuts_BA_2,14 variantNucMuts_BA_2_12_1,14 variantNucMuts_BA_2_75,14 variantNucMuts_BQ_1,14 variantNucMuts_CH_1_1,14 variantNucMuts_EG_5_1,14 variantNucMuts_XBB,14 variantNucMuts_XBB_1_16,14 variantNucMuts_XBB_1_5,14 variantNucMuts_XBB_1_9,14 variantNucMuts_XBB_2_3,14 weizmanOrfs,381 sep-2020 variantAaMutsV2_B_1_1_7,8 variantNucMutsV2_B_1_1_7,8 separate Calu3_07hpi,260 ORFs,258 Q0_tracks,363 Q1_tracks,365 Q2_tracks,365 Q3_tracks,365 Vero6_05hpi,260 Vero6_24hpi,260 galaxyEna,365 galaxyEnaQ0Ba-1,361 galaxyEnaQ0Ba-1-1,361 galaxyEnaQ0Ba-1-1-11,361 galaxyEnaQ0Ba-1-17,361 galaxyEnaQ0Ba-2,361 galaxyEnaQ1Ay-4,361 galaxyEnaQ1Ay-4-2,361 galaxyEnaQ1Ay-4-2-2,361 galaxyEnaQ1Ay-43,361 galaxyEnaQ1Ba-1-17,361 galaxyEnaQ2Ay-120,361 galaxyEnaQ2Ay-122,361 galaxyEnaQ2Ay-4,361 galaxyEnaQ2Ay-5,361 galaxyEnaQ2Ay-6,361 galaxyEnaQ3Ay-4,361 galaxyEnaQ3Ay-5,361 galaxyEnaQ3Ay-9,361 galaxyEnaQ3B-1-1-7,361 galaxyEnaQ3B-1-617-2,361 strainCons119way,2010 strainCons44way,1605 weizmanOrfs,266 separated problematicSites,119 separately pbmShanghai,145 strainCons119way,211 strainCons44way,159 separation potPathoIndel,118 sepideh microdel,287 sept vaccines,561 september sarsCov2PhyloPub,1252 vaccines,607 variantMuts,1105 variantMuts,1149 seq kimIvtCov,8 seq1 primers,70 seq2 primers,72 seq_end problematicSites,367 seqres contacts,95 sequence IgG_Z-score-_COVID-19_patients,104 IgM_Z-score-_COVID-19_patients,104 PhyloCSF_smooth,75 PhyloCSFpower,90 Q0_tracks,936 Q1_tracks,938 Q2_tracks,938 Q3_tracks,938 addgene,167 addgene,170 augustusGene,32 augustusGene,70 bpmIggCovidSum,113 bpmIgmCovidSum,113 contacts,253 cpgIslandExt,232 cpgIslandExt,303 cpgIslandExt,325 cpgIslandExt,329 cpgIslandExt,397 cpgIslandExt,410 cpgIslandExtUnmasked,7 cpgIslandExtUnmasked,235 cpgIslandExtUnmasked,306 cpgIslandExtUnmasked,328 cpgIslandExtUnmasked,332 cpgIslandExtUnmasked,400 cpgIslandExtUnmasked,413 cpgIslandSuper,232 cpgIslandSuper,303 cpgIslandSuper,325 cpgIslandSuper,329 cpgIslandSuper,397 cpgIslandSuper,410 crisprDet,83 epitopes,79 epitopes,236 epitopes,339 galaxyEna,938 galaxyEnaQ0Ba-1,934 galaxyEnaQ0Ba-1-1,934 galaxyEnaQ0Ba-1-1-11,934 galaxyEnaQ0Ba-1-17,934 galaxyEnaQ0Ba-2,934 galaxyEnaQ1Ay-4,934 galaxyEnaQ1Ay-4-2,934 galaxyEnaQ1Ay-4-2-2,934 galaxyEnaQ1Ay-43,934 galaxyEnaQ1Ba-1-17,934 galaxyEnaQ2Ay-120,934 galaxyEnaQ2Ay-122,934 galaxyEnaQ2Ay-4,934 galaxyEnaQ2Ay-5,934 galaxyEnaQ2Ay-6,934 galaxyEnaQ3Ay-4,934 galaxyEnaQ3Ay-5,934 galaxyEnaQ3Ay-9,934 galaxyEnaQ3B-1-1-7,934 galaxyEnaQ3B-1-617-2,934 gap,54 gold,53 gold,150 kimIvtCov,82 kimIvtCov,90 kimTranscripts,67 kimTranscripts,73 kimTranscripts,100 kimTranscripts,303 microdel,46 multiz7way,32 multiz7way,357 multiz7way,367 multiz7way,576 multiz7way,581 multiz7way,763 multiz7way,1221 pbm,113 pbmShanghai,170 pbmShanghai,196 pdb,7 pdb,33 pdb,129 primers,27 recomb,194 sarsCov2Phylo,424 sarsCov2Phylo,1027 sarsCov2PhyloPub,453 sarsCov2PhyloPub,736 sarsCov2PhyloPub,817 sarsCov2PhyloPub,945 sarsCov2PhyloPub,1147 strainCons119way,56 strainCons119way,405 strainCons119way,417 strainCons119way,699 strainCons119way,709 strainCons119way,926 strainCons119way,931 strainCons119way,1523 strainCons119way,2599 strainCons44way,53 strainCons44way,353 strainCons44way,365 strainCons44way,647 strainCons44way,657 strainCons44way,874 strainCons44way,879 strainCons44way,1193 strainCons44way,2194 swift,68 swift,109 targets,72 targets,144 targets,153 targets,156 targets,178 targets,221 transcriptome,59 transcriptome,65 transcriptome,92 transcriptome,130 transcriptome,247 transcriptome,296 treangen,58 ucscToINSDC,7 ucscToINSDC,29 ucscToRefSeq,24 unipCov2AliSwissprot,19 unipCov2AliSwissprot,491 unipCov2Chain,18 unipCov2Chain,215 unipCov2Chain,231 unipCov2Chain,240 unipCov2Chain,246 unipCov2Chain,720 unipCov2DisulfBond,14 unipCov2DisulfBond,211 unipCov2DisulfBond,227 unipCov2DisulfBond,236 unipCov2DisulfBond,242 unipCov2DisulfBond,716 unipCov2Domain,13 unipCov2Domain,210 unipCov2Domain,226 unipCov2Domain,235 unipCov2Domain,241 unipCov2Domain,715 unipCov2Interest,15 unipCov2Interest,374 unipCov2LocCytopl,13 unipCov2LocCytopl,210 unipCov2LocCytopl,226 unipCov2LocCytopl,235 unipCov2LocCytopl,241 unipCov2LocCytopl,715 unipCov2LocExtra,13 unipCov2LocExtra,210 unipCov2LocExtra,226 unipCov2LocExtra,235 unipCov2LocExtra,241 unipCov2LocExtra,715 unipCov2LocSignal,14 unipCov2LocSignal,211 unipCov2LocSignal,227 unipCov2LocSignal,236 unipCov2LocSignal,242 unipCov2LocSignal,716 unipCov2LocTransMemb,14 unipCov2LocTransMemb,211 unipCov2LocTransMemb,227 unipCov2LocTransMemb,236 unipCov2LocTransMemb,242 unipCov2LocTransMemb,716 unipCov2Modif,17 unipCov2Modif,214 unipCov2Modif,230 unipCov2Modif,239 unipCov2Modif,245 unipCov2Modif,719 unipCov2Mut,14 unipCov2Mut,211 unipCov2Mut,227 unipCov2Mut,236 unipCov2Mut,242 unipCov2Mut,716 unipCov2Other,14 unipCov2Other,211 unipCov2Other,227 unipCov2Other,236 unipCov2Other,242 unipCov2Other,716 unipCov2Repeat,12 unipCov2Repeat,209 unipCov2Repeat,225 unipCov2Repeat,234 unipCov2Repeat,240 unipCov2Repeat,714 unipCov2Struct,16 unipCov2Struct,213 unipCov2Struct,229 unipCov2Struct,238 unipCov2Struct,244 unipCov2Struct,718 vaccines,31 vaccines,60 vaccines,140 vaccines,144 vaccines,186 vaccines,463 variantMuts,873 variantMuts,912 windowmaskerSdust,17 sequence-based poranHla1,273 poranHla2,273 sequenced rapid,66 spikeMuts,153 vaccines,46 vaccines,62 windowmaskerSdust,104 sequences IgG_Z-score-_COVID-19_patients,131 IgM_Z-score-_COVID-19_patients,131 Q0_tracks,134 Q0_tracks,221 Q1_tracks,136 Q1_tracks,223 Q2_tracks,136 Q2_tracks,223 Q3_tracks,136 Q3_tracks,223 TRS_sites,5 addgene,5 addgene,17 addgene,31 addgene,213 artic,50 articV4,53 articV4_1,64 bpmIggCovidSum,140 bpmIgmCovidSum,140 cas13Crispr,73 cas13Crispr,245 cas13Crispr,299 cas13Crispr,316 contacts,97 crisprDet,137 galaxyEna,136 galaxyEna,223 galaxyEnaQ0Ba-1,132 galaxyEnaQ0Ba-1,219 galaxyEnaQ0Ba-1-1,132 galaxyEnaQ0Ba-1-1,219 galaxyEnaQ0Ba-1-1-11,132 galaxyEnaQ0Ba-1-1-11,219 galaxyEnaQ0Ba-1-17,132 galaxyEnaQ0Ba-1-17,219 galaxyEnaQ0Ba-2,132 galaxyEnaQ0Ba-2,219 galaxyEnaQ1Ay-4,132 galaxyEnaQ1Ay-4,219 galaxyEnaQ1Ay-4-2,132 galaxyEnaQ1Ay-4-2,219 galaxyEnaQ1Ay-4-2-2,132 galaxyEnaQ1Ay-4-2-2,219 galaxyEnaQ1Ay-43,132 galaxyEnaQ1Ay-43,219 galaxyEnaQ1Ba-1-17,132 galaxyEnaQ1Ba-1-17,219 galaxyEnaQ2Ay-120,132 galaxyEnaQ2Ay-120,219 galaxyEnaQ2Ay-122,132 galaxyEnaQ2Ay-122,219 galaxyEnaQ2Ay-4,132 galaxyEnaQ2Ay-4,219 galaxyEnaQ2Ay-5,132 galaxyEnaQ2Ay-5,219 galaxyEnaQ2Ay-6,132 galaxyEnaQ2Ay-6,219 galaxyEnaQ3Ay-4,132 galaxyEnaQ3Ay-4,219 galaxyEnaQ3Ay-5,132 galaxyEnaQ3Ay-5,219 galaxyEnaQ3Ay-9,132 galaxyEnaQ3Ay-9,219 galaxyEnaQ3B-1-1-7,132 galaxyEnaQ3B-1-1-7,219 galaxyEnaQ3B-1-617-2,132 galaxyEnaQ3B-1-617-2,219 gold,13 iedb,15 kimIvtCov,25 kimIvtCov,162 kimTranscripts,8 microdel,5 microdel,20 microdel,54 microdel,62 microdel,78 microdel,100 microdel,136 microdel,197 multiz7way,25 multiz7way,64 multiz7way,1113 multiz7way,1192 nextstrainClade,50 nextstrainClade,150 nextstrainClade,240 nextstrainFreq,50 nextstrainFreq,62 nextstrainFreq,146 nextstrainFreq,375 nextstrainGene,46 nextstrainGene,104 nextstrainGene,189 nextstrainParsimony,29 nextstrainParsimony,67 nextstrainParsimony,79 nextstrainParsimony,303 nextstrainSamples,26 nextstrainSamples,61 nextstrainSamples,621 nextstrainSamples,634 nextstrainSamples,675 nextstrainSamples,696 nextstrainSamples,737 pbm,140 pdb,19 pdb,49 pdb,102 primers,232 problematicSites,32 problematicSites,63 problematicSites,224 problematicSites,228 problematicSites,329 problematicSites,339 rapid,191 recomb,32 recomb,56 resistPred,15 resistPred,130 sarsCov2Phylo,11 sarsCov2Phylo,30 sarsCov2Phylo,39 sarsCov2Phylo,576 sarsCov2Phylo,584 sarsCov2Phylo,654 sarsCov2Phylo,741 sarsCov2Phylo,753 sarsCov2Phylo,807 sarsCov2Phylo,816 sarsCov2Phylo,843 sarsCov2PhyloFull,11 sarsCov2PhyloMinAf001,17 sarsCov2PhyloMinAf01,17 sarsCov2PhyloPub,10 sarsCov2PhyloPub,28 sarsCov2PhyloPub,53 sarsCov2PhyloPub,601 sarsCov2PhyloPub,611 sarsCov2PhyloPub,678 sarsCov2PhyloPub,1033 sarsCov2PhyloPub,1046 sarsCov2PhyloPubAllFull,11 sarsCov2PhyloPubAllMinAf001,14 sarsCov2PhyloPubAllMinAf01,14 simpleRepeat,84 strainCons119way,50 strainCons119way,65 strainCons119way,96 strainCons119way,105 strainCons119way,109 strainCons119way,131 strainCons119way,2491 strainCons119way,2570 strainCons44way,47 strainCons44way,79 strainCons44way,2086 strainCons44way,2165 swift,91 swift,127 targets,176 transcriptome,306 transcriptome,326 unipCov2AliSwissprot,35 unipCov2AliSwissprot,152 unipCov2AliSwissprot,159 unipCov2Chain,65 unipCov2Chain,87 unipCov2Chain,236 unipCov2Chain,405 unipCov2Chain,412 unipCov2DisulfBond,61 unipCov2DisulfBond,83 unipCov2DisulfBond,232 unipCov2DisulfBond,401 unipCov2DisulfBond,408 unipCov2Domain,60 unipCov2Domain,82 unipCov2Domain,231 unipCov2Domain,400 unipCov2Domain,407 unipCov2Interest,81 unipCov2Interest,88 unipCov2LocCytopl,60 unipCov2LocCytopl,82 unipCov2LocCytopl,231 unipCov2LocCytopl,400 unipCov2LocCytopl,407 unipCov2LocExtra,60 unipCov2LocExtra,82 unipCov2LocExtra,231 unipCov2LocExtra,400 unipCov2LocExtra,407 unipCov2LocSignal,61 unipCov2LocSignal,83 unipCov2LocSignal,232 unipCov2LocSignal,401 unipCov2LocSignal,408 unipCov2LocTransMemb,61 unipCov2LocTransMemb,83 unipCov2LocTransMemb,232 unipCov2LocTransMemb,401 unipCov2LocTransMemb,408 unipCov2Modif,64 unipCov2Modif,86 unipCov2Modif,235 unipCov2Modif,404 unipCov2Modif,411 unipCov2Mut,61 unipCov2Mut,83 unipCov2Mut,232 unipCov2Mut,401 unipCov2Mut,408 unipCov2Other,61 unipCov2Other,83 unipCov2Other,232 unipCov2Other,401 unipCov2Other,408 unipCov2Repeat,59 unipCov2Repeat,81 unipCov2Repeat,230 unipCov2Repeat,399 unipCov2Repeat,406 unipCov2Struct,63 unipCov2Struct,85 unipCov2Struct,234 unipCov2Struct,403 unipCov2Struct,410 vaccines,22 vaccines,190 vaccines,359 vaccines,443 vaccines,520 variantAaMutsV2_B_1_1_7,15 variantAaMutsV2_B_1_351,15 variantAaMutsV2_B_1_429,15 variantAaMutsV2_B_1_525,14 variantAaMutsV2_B_1_526,15 variantAaMutsV2_B_1_617_1,15 variantAaMutsV2_B_1_617_2,15 variantAaMutsV2_B_1_621,15 variantAaMutsV2_C_37,15 variantAaMutsV2_P_1,15 variantAaMuts_BA_2,12 variantAaMuts_BA_2_12_1,12 variantAaMuts_BA_2_75,13 variantAaMuts_BA_2_86,12 variantAaMuts_BA_4,13 variantAaMuts_BA_5,13 variantAaMuts_BQ_1,12 variantAaMuts_CH_1_1,12 variantAaMuts_EG_5_1,12 variantAaMuts_HK_3,12 variantAaMuts_JN_1,12 variantAaMuts_XBB,12 variantAaMuts_XBB_1_16,12 variantAaMuts_XBB_1_5,12 variantAaMuts_XBB_1_5_70,12 variantAaMuts_XBB_1_9,12 variantAaMuts_XBB_2_3,12 variantMuts,73 variantMuts,199 variantMuts,221 variantMuts,786 variantMuts,828 variantMuts,831 variantMuts,916 variantMuts,948 variantMuts,955 variantMuts,1017 variantMuts,1440 variantMuts,1454 variantNucMutsV2_B_1_1_7,14 variantNucMutsV2_B_1_351,14 variantNucMutsV2_B_1_429,14 variantNucMutsV2_B_1_525,13 variantNucMutsV2_B_1_526,14 variantNucMutsV2_B_1_617_1,14 variantNucMutsV2_B_1_617_2,14 variantNucMutsV2_B_1_621,14 variantNucMutsV2_C_37,14 variantNucMutsV2_P_1,14 variantNucMuts_BA_2,13 variantNucMuts_BA_2_12_1,13 variantNucMuts_BA_2_75,13 variantNucMuts_BA_2_86,13 variantNucMuts_BA_4,14 variantNucMuts_BA_5,14 variantNucMuts_BQ_1,13 variantNucMuts_B_1_1_529,15 variantNucMuts_CH_1_1,13 variantNucMuts_EG_5_1,13 variantNucMuts_HK_3,13 variantNucMuts_JN_1,13 variantNucMuts_XBB,13 variantNucMuts_XBB_1_16,13 variantNucMuts_XBB_1_5,13 variantNucMuts_XBB_1_5_70,13 variantNucMuts_XBB_1_9,13 variantNucMuts_XBB_2_3,13 varskip,58 sequencing PhyloCSF_smooth,113 PhyloCSFpower,128 Q0_tracks,45 Q0_tracks,101 Q0_tracks,808 Q0_tracks,839 Q0_tracks,943 Q0_tracks,1182 Q1_tracks,47 Q1_tracks,103 Q1_tracks,810 Q1_tracks,841 Q1_tracks,945 Q1_tracks,1184 Q2_tracks,47 Q2_tracks,103 Q2_tracks,810 Q2_tracks,841 Q2_tracks,945 Q2_tracks,1184 Q3_tracks,47 Q3_tracks,103 Q3_tracks,810 Q3_tracks,841 Q3_tracks,945 Q3_tracks,1184 addgene,12 artic,8 artic,12 artic,24 articV4,8 articV4,12 articV4,24 articV4_1,8 articV4_1,12 articV4_1,24 cas13Crispr,8 cd8escape,91 cd8escape,137 crisprDet,8 cytoBandIdeo,9 galaxyEna,15 galaxyEna,47 galaxyEna,103 galaxyEna,810 galaxyEna,841 galaxyEna,945 galaxyEna,1184 galaxyEnaQ0Ba-1,43 galaxyEnaQ0Ba-1,99 galaxyEnaQ0Ba-1,806 galaxyEnaQ0Ba-1,837 galaxyEnaQ0Ba-1,941 galaxyEnaQ0Ba-1,1180 galaxyEnaQ0Ba-1-1,43 galaxyEnaQ0Ba-1-1,99 galaxyEnaQ0Ba-1-1,806 galaxyEnaQ0Ba-1-1,837 galaxyEnaQ0Ba-1-1,941 galaxyEnaQ0Ba-1-1,1180 galaxyEnaQ0Ba-1-1-11,43 galaxyEnaQ0Ba-1-1-11,99 galaxyEnaQ0Ba-1-1-11,806 galaxyEnaQ0Ba-1-1-11,837 galaxyEnaQ0Ba-1-1-11,941 galaxyEnaQ0Ba-1-1-11,1180 galaxyEnaQ0Ba-1-17,43 galaxyEnaQ0Ba-1-17,99 galaxyEnaQ0Ba-1-17,806 galaxyEnaQ0Ba-1-17,837 galaxyEnaQ0Ba-1-17,941 galaxyEnaQ0Ba-1-17,1180 galaxyEnaQ0Ba-2,43 galaxyEnaQ0Ba-2,99 galaxyEnaQ0Ba-2,806 galaxyEnaQ0Ba-2,837 galaxyEnaQ0Ba-2,941 galaxyEnaQ0Ba-2,1180 galaxyEnaQ1Ay-4,43 galaxyEnaQ1Ay-4,99 galaxyEnaQ1Ay-4,806 galaxyEnaQ1Ay-4,837 galaxyEnaQ1Ay-4,941 galaxyEnaQ1Ay-4,1180 galaxyEnaQ1Ay-4-2,43 galaxyEnaQ1Ay-4-2,99 galaxyEnaQ1Ay-4-2,806 galaxyEnaQ1Ay-4-2,837 galaxyEnaQ1Ay-4-2,941 galaxyEnaQ1Ay-4-2,1180 galaxyEnaQ1Ay-4-2-2,43 galaxyEnaQ1Ay-4-2-2,99 galaxyEnaQ1Ay-4-2-2,806 galaxyEnaQ1Ay-4-2-2,837 galaxyEnaQ1Ay-4-2-2,941 galaxyEnaQ1Ay-4-2-2,1180 galaxyEnaQ1Ay-43,43 galaxyEnaQ1Ay-43,99 galaxyEnaQ1Ay-43,806 galaxyEnaQ1Ay-43,837 galaxyEnaQ1Ay-43,941 galaxyEnaQ1Ay-43,1180 galaxyEnaQ1Ba-1-17,43 galaxyEnaQ1Ba-1-17,99 galaxyEnaQ1Ba-1-17,806 galaxyEnaQ1Ba-1-17,837 galaxyEnaQ1Ba-1-17,941 galaxyEnaQ1Ba-1-17,1180 galaxyEnaQ2Ay-120,43 galaxyEnaQ2Ay-120,99 galaxyEnaQ2Ay-120,806 galaxyEnaQ2Ay-120,837 galaxyEnaQ2Ay-120,941 galaxyEnaQ2Ay-120,1180 galaxyEnaQ2Ay-122,43 galaxyEnaQ2Ay-122,99 galaxyEnaQ2Ay-122,806 galaxyEnaQ2Ay-122,837 galaxyEnaQ2Ay-122,941 galaxyEnaQ2Ay-122,1180 galaxyEnaQ2Ay-4,43 galaxyEnaQ2Ay-4,99 galaxyEnaQ2Ay-4,806 galaxyEnaQ2Ay-4,837 galaxyEnaQ2Ay-4,941 galaxyEnaQ2Ay-4,1180 galaxyEnaQ2Ay-5,43 galaxyEnaQ2Ay-5,99 galaxyEnaQ2Ay-5,806 galaxyEnaQ2Ay-5,837 galaxyEnaQ2Ay-5,941 galaxyEnaQ2Ay-5,1180 galaxyEnaQ2Ay-6,43 galaxyEnaQ2Ay-6,99 galaxyEnaQ2Ay-6,806 galaxyEnaQ2Ay-6,837 galaxyEnaQ2Ay-6,941 galaxyEnaQ2Ay-6,1180 galaxyEnaQ3Ay-4,43 galaxyEnaQ3Ay-4,99 galaxyEnaQ3Ay-4,806 galaxyEnaQ3Ay-4,837 galaxyEnaQ3Ay-4,941 galaxyEnaQ3Ay-4,1180 galaxyEnaQ3Ay-5,43 galaxyEnaQ3Ay-5,99 galaxyEnaQ3Ay-5,806 galaxyEnaQ3Ay-5,837 galaxyEnaQ3Ay-5,941 galaxyEnaQ3Ay-5,1180 galaxyEnaQ3Ay-9,43 galaxyEnaQ3Ay-9,99 galaxyEnaQ3Ay-9,806 galaxyEnaQ3Ay-9,837 galaxyEnaQ3Ay-9,941 galaxyEnaQ3Ay-9,1180 galaxyEnaQ3B-1-1-7,43 galaxyEnaQ3B-1-1-7,99 galaxyEnaQ3B-1-1-7,806 galaxyEnaQ3B-1-1-7,837 galaxyEnaQ3B-1-1-7,941 galaxyEnaQ3B-1-1-7,1180 galaxyEnaQ3B-1-617-2,43 galaxyEnaQ3B-1-617-2,99 galaxyEnaQ3B-1-617-2,806 galaxyEnaQ3B-1-617-2,837 galaxyEnaQ3B-1-617-2,941 galaxyEnaQ3B-1-617-2,1180 gap,6 gc5BaseBw,10 gold,7 icshape,69 kimIvtCov,16 kimIvtCov,47 kimIvtCov,55 kimIvtCov,85 kimIvtCov,114 kimIvtCov,123 kimIvtCov,142 kimIvtCov,157 kimNp,36 kimRnaMod,38 kimTranscripts,34 kimTranscripts,145 kimTranscripts,170 kimTranscripts,211 kimTranscripts,260 microdel,250 primers,10 primers,65 problematicSites,15 problematicSites,38 problematicSites,204 problematicSites,208 problematicSites,233 problematicSites,270 problematicSites,301 problematicSites,322 problematicSites,344 problematicSites,425 problematicSites,554 problematicSitesCaution,12 problematicSitesMask,12 publicAnnots,12 rapid,10 rapid,14 rapid,25 rapid,119 rapid,351 spikeMuts,72 swift,5 swift,9 transcriptome,26 transcriptome,206 ucscToINSDC,12 ucscToRefSeq,7 vaccines,213 vaccines,629 varskip,12 varskip,26 varskip1a,8 varskip2,8 varskip2b,10 varskipVsl1a,10 sera IgG_Z-score-_COVID-19_patients,33 IgM_Z-score-_COVID-19_patients,33 abEscape,94 abEscape,223 abEscape,261 abEscape,421 abEscape,464 abEscape,569 bloomEscMabAvg,98 bloomEscMabAvg,227 bloomEscMabAvg,265 bloomEscMabAvg,425 bloomEscMabAvg,468 bloomEscMabAvg,573 bloomEscMax,104 bloomEscMax,233 bloomEscMax,271 bloomEscMax,431 bloomEscMax,474 bloomEscMax,579 bloomEscSerumAvg,99 bloomEscSerumAvg,228 bloomEscSerumAvg,266 bloomEscSerumAvg,426 bloomEscSerumAvg,469 bloomEscSerumAvg,574 bloomEscTop,102 bloomEscTop,231 bloomEscTop,269 bloomEscTop,429 bloomEscTop,472 bloomEscTop,577 bpmIggCovidSum,42 bpmIgmCovidSum,42 escape,101 escape,230 escape,268 escape,428 escape,471 escape,576 mccoy,94 mccoy,223 mccoy,261 mccoy,421 mccoy,464 mccoy,569 pbm,42 pbmShanghai,44 pbmShanghai,52 rappuoli,101 rappuoli,230 rappuoli,268 rappuoli,428 rappuoli,471 rappuoli,576 sergei Negative_Selection,11 Positive_Selection,11 pond,8 pond,22 pond,56 series multiz7way,102 strainCons119way,451 strainCons44way,399 seronegative targets,101 serum A_120Max,1 A_120Total,1 A_21Max,1 A_21Total,1 A_45Max,1 A_45Total,1 B_113Max,1 B_113Total,1 B_26Max,1 B_26Total,1 C_104Max,1 C_104Total,1 C_32Max,1 C_32Total,1 D_33Max,1 D_33Total,1 D_76Max,1 D_76Total,1 E_104Max,1 E_104Total,1 E_28Max,1 E_28Total,1 F_115Max,1 F_115Total,1 F_48Max,1 F_48Total,1 G_18Max,1 G_18Total,1 G_94Max,1 G_94Total,1 H_152Max,1 H_152Total,1 H_61Max,1 H_61Total,1 I_102Max,1 I_102Total,1 I_26Max,1 I_26Total,1 J_121Max,1 J_121Total,1 J_15Max,1 J_15Total,1 K_103Max,1 K_103Total,1 K_29Max,1 K_29Total,1 abEscape,5 abEscape,29 abEscape,189 abEscape,202 abEscape,719 abEscape,820 bloomEscMabAvg,33 bloomEscMabAvg,193 bloomEscMabAvg,206 bloomEscMabAvg,723 bloomEscMabAvg,824 bloomEscMax,19 bloomEscMax,39 bloomEscMax,199 bloomEscMax,212 bloomEscMax,729 bloomEscMax,830 bloomEscSerumAvg,2 bloomEscSerumAvg,9 bloomEscSerumAvg,15 bloomEscSerumAvg,34 bloomEscSerumAvg,194 bloomEscSerumAvg,207 bloomEscSerumAvg,724 bloomEscSerumAvg,825 bloomEscTop,37 bloomEscTop,197 bloomEscTop,210 bloomEscTop,727 bloomEscTop,828 bloomEscTotal,19 escape,36 escape,196 escape,209 escape,726 escape,827 mccoy,11 mccoy,29 mccoy,189 mccoy,202 mccoy,719 mccoy,820 rappuoli,2 rappuoli,36 rappuoli,196 rappuoli,209 rappuoli,726 rappuoli,827 served gordon2,194 server IgG_Z-score-_COVID-19_patients,323 IgM_Z-score-_COVID-19_patients,323 PhyloCSF_smooth,652 Q0_tracks,236 Q0_tracks,820 Q0_tracks,983 Q0_tracks,1012 Q0_tracks,1060 Q1_tracks,238 Q1_tracks,822 Q1_tracks,985 Q1_tracks,1014 Q1_tracks,1062 Q2_tracks,238 Q2_tracks,822 Q2_tracks,985 Q2_tracks,1014 Q2_tracks,1062 Q3_tracks,238 Q3_tracks,822 Q3_tracks,985 Q3_tracks,1014 Q3_tracks,1062 artic,106 articV4,106 articV4_1,119 bpmIggCovidSum,332 bpmIgmCovidSum,332 cas13Crispr,391 contacts,319 galaxyEna,238 galaxyEna,822 galaxyEna,985 galaxyEna,1014 galaxyEna,1062 galaxyEnaQ0Ba-1,234 galaxyEnaQ0Ba-1,818 galaxyEnaQ0Ba-1,981 galaxyEnaQ0Ba-1,1010 galaxyEnaQ0Ba-1,1058 galaxyEnaQ0Ba-1-1,234 galaxyEnaQ0Ba-1-1,818 galaxyEnaQ0Ba-1-1,981 galaxyEnaQ0Ba-1-1,1010 galaxyEnaQ0Ba-1-1,1058 galaxyEnaQ0Ba-1-1-11,234 galaxyEnaQ0Ba-1-1-11,818 galaxyEnaQ0Ba-1-1-11,981 galaxyEnaQ0Ba-1-1-11,1010 galaxyEnaQ0Ba-1-1-11,1058 galaxyEnaQ0Ba-1-17,234 galaxyEnaQ0Ba-1-17,818 galaxyEnaQ0Ba-1-17,981 galaxyEnaQ0Ba-1-17,1010 galaxyEnaQ0Ba-1-17,1058 galaxyEnaQ0Ba-2,234 galaxyEnaQ0Ba-2,818 galaxyEnaQ0Ba-2,981 galaxyEnaQ0Ba-2,1010 galaxyEnaQ0Ba-2,1058 galaxyEnaQ1Ay-4,234 galaxyEnaQ1Ay-4,818 galaxyEnaQ1Ay-4,981 galaxyEnaQ1Ay-4,1010 galaxyEnaQ1Ay-4,1058 galaxyEnaQ1Ay-4-2,234 galaxyEnaQ1Ay-4-2,818 galaxyEnaQ1Ay-4-2,981 galaxyEnaQ1Ay-4-2,1010 galaxyEnaQ1Ay-4-2,1058 galaxyEnaQ1Ay-4-2-2,234 galaxyEnaQ1Ay-4-2-2,818 galaxyEnaQ1Ay-4-2-2,981 galaxyEnaQ1Ay-4-2-2,1010 galaxyEnaQ1Ay-4-2-2,1058 galaxyEnaQ1Ay-43,234 galaxyEnaQ1Ay-43,818 galaxyEnaQ1Ay-43,981 galaxyEnaQ1Ay-43,1010 galaxyEnaQ1Ay-43,1058 galaxyEnaQ1Ba-1-17,234 galaxyEnaQ1Ba-1-17,818 galaxyEnaQ1Ba-1-17,981 galaxyEnaQ1Ba-1-17,1010 galaxyEnaQ1Ba-1-17,1058 galaxyEnaQ2Ay-120,234 galaxyEnaQ2Ay-120,818 galaxyEnaQ2Ay-120,981 galaxyEnaQ2Ay-120,1010 galaxyEnaQ2Ay-120,1058 galaxyEnaQ2Ay-122,234 galaxyEnaQ2Ay-122,818 galaxyEnaQ2Ay-122,981 galaxyEnaQ2Ay-122,1010 galaxyEnaQ2Ay-122,1058 galaxyEnaQ2Ay-4,234 galaxyEnaQ2Ay-4,818 galaxyEnaQ2Ay-4,981 galaxyEnaQ2Ay-4,1010 galaxyEnaQ2Ay-4,1058 galaxyEnaQ2Ay-5,234 galaxyEnaQ2Ay-5,818 galaxyEnaQ2Ay-5,981 galaxyEnaQ2Ay-5,1010 galaxyEnaQ2Ay-5,1058 galaxyEnaQ2Ay-6,234 galaxyEnaQ2Ay-6,818 galaxyEnaQ2Ay-6,981 galaxyEnaQ2Ay-6,1010 galaxyEnaQ2Ay-6,1058 galaxyEnaQ3Ay-4,234 galaxyEnaQ3Ay-4,818 galaxyEnaQ3Ay-4,981 galaxyEnaQ3Ay-4,1010 galaxyEnaQ3Ay-4,1058 galaxyEnaQ3Ay-5,234 galaxyEnaQ3Ay-5,818 galaxyEnaQ3Ay-5,981 galaxyEnaQ3Ay-5,1010 galaxyEnaQ3Ay-5,1058 galaxyEnaQ3Ay-9,234 galaxyEnaQ3Ay-9,818 galaxyEnaQ3Ay-9,981 galaxyEnaQ3Ay-9,1010 galaxyEnaQ3Ay-9,1058 galaxyEnaQ3B-1-1-7,234 galaxyEnaQ3B-1-1-7,818 galaxyEnaQ3B-1-1-7,981 galaxyEnaQ3B-1-1-7,1010 galaxyEnaQ3B-1-1-7,1058 galaxyEnaQ3B-1-617-2,234 galaxyEnaQ3B-1-617-2,818 galaxyEnaQ3B-1-617-2,981 galaxyEnaQ3B-1-617-2,1010 galaxyEnaQ3B-1-617-2,1058 icshape,96 kimRnaMod,153 kimTranscripts,370 microdel,169 ncbiGeneBGP,75 ncbiProducts,91 nextstrainClade,192 nextstrainFreq,185 nextstrainGene,142 nextstrainParsimony,354 nextstrainSamples,785 pbm,332 pbmShanghai,449 phyloGenes,367 poranHla1,180 poranHla2,180 primers,329 problematicSites,512 rapid,260 recomb,286 resist,119 resistPred,211 sarsCov2Phylo,717 sarsCov2PhyloPub,816 spikeMuts,321 spikeMuts,337 strainCons119way,433 strainCons44way,381 swift,189 transcriptome,376 unipCov2AliSwissprot,296 unipCov2AliSwissprot,382 unipCov2Chain,526 unipCov2Chain,612 unipCov2DisulfBond,522 unipCov2DisulfBond,608 unipCov2Domain,521 unipCov2Domain,607 unipCov2Interest,202 unipCov2LocCytopl,521 unipCov2LocCytopl,607 unipCov2LocExtra,521 unipCov2LocExtra,607 unipCov2LocSignal,522 unipCov2LocSignal,608 unipCov2LocTransMemb,522 unipCov2LocTransMemb,608 unipCov2Modif,525 unipCov2Modif,611 unipCov2Mut,522 unipCov2Mut,608 unipCov2Other,522 unipCov2Other,608 unipCov2Repeat,520 unipCov2Repeat,606 unipCov2Struct,524 unipCov2Struct,610 vaccines,370 variantMuts,864 variantMuts,988 varskip,112 servers Q0_tracks,186 Q0_tracks,990 Q1_tracks,188 Q1_tracks,992 Q2_tracks,188 Q2_tracks,992 Q3_tracks,188 Q3_tracks,992 cpgIslandExt,539 cpgIslandExtUnmasked,542 cpgIslandSuper,539 galaxyEna,188 galaxyEna,992 galaxyEnaQ0Ba-1,184 galaxyEnaQ0Ba-1,988 galaxyEnaQ0Ba-1-1,184 galaxyEnaQ0Ba-1-1,988 galaxyEnaQ0Ba-1-1-11,184 galaxyEnaQ0Ba-1-1-11,988 galaxyEnaQ0Ba-1-17,184 galaxyEnaQ0Ba-1-17,988 galaxyEnaQ0Ba-2,184 galaxyEnaQ0Ba-2,988 galaxyEnaQ1Ay-4,184 galaxyEnaQ1Ay-4,988 galaxyEnaQ1Ay-4-2,184 galaxyEnaQ1Ay-4-2,988 galaxyEnaQ1Ay-4-2-2,184 galaxyEnaQ1Ay-4-2-2,988 galaxyEnaQ1Ay-43,184 galaxyEnaQ1Ay-43,988 galaxyEnaQ1Ba-1-17,184 galaxyEnaQ1Ba-1-17,988 galaxyEnaQ2Ay-120,184 galaxyEnaQ2Ay-120,988 galaxyEnaQ2Ay-122,184 galaxyEnaQ2Ay-122,988 galaxyEnaQ2Ay-4,184 galaxyEnaQ2Ay-4,988 galaxyEnaQ2Ay-5,184 galaxyEnaQ2Ay-5,988 galaxyEnaQ2Ay-6,184 galaxyEnaQ2Ay-6,988 galaxyEnaQ3Ay-4,184 galaxyEnaQ3Ay-4,988 galaxyEnaQ3Ay-5,184 galaxyEnaQ3Ay-5,988 galaxyEnaQ3Ay-9,184 galaxyEnaQ3Ay-9,988 galaxyEnaQ3B-1-1-7,184 galaxyEnaQ3B-1-1-7,988 galaxyEnaQ3B-1-617-2,184 galaxyEnaQ3B-1-617-2,988 serves nextstrainSamples,196 service vaccines,236 set Q0_tracks,974 Q1_tracks,976 Q2_tracks,976 Q3_tracks,976 cas13Crispr,84 crisprDet,65 galaxyEna,976 galaxyEnaQ0Ba-1,972 galaxyEnaQ0Ba-1-1,972 galaxyEnaQ0Ba-1-1-11,972 galaxyEnaQ0Ba-1-17,972 galaxyEnaQ0Ba-2,972 galaxyEnaQ1Ay-4,972 galaxyEnaQ1Ay-4-2,972 galaxyEnaQ1Ay-4-2-2,972 galaxyEnaQ1Ay-43,972 galaxyEnaQ1Ba-1-17,972 galaxyEnaQ2Ay-120,972 galaxyEnaQ2Ay-122,972 galaxyEnaQ2Ay-4,972 galaxyEnaQ2Ay-5,972 galaxyEnaQ2Ay-6,972 galaxyEnaQ3Ay-4,972 galaxyEnaQ3Ay-5,972 galaxyEnaQ3Ay-9,972 galaxyEnaQ3B-1-1-7,972 galaxyEnaQ3B-1-617-2,972 gordon2,136 kimIvtCov,106 nextstrainSamples,181 nextstrainSamples,495 primers,183 primers,206 primers,221 pyle,138 pyle,146 rapid,136 strainCons119way,624 strainCons119way,638 strainCons119way,1752 strainCons119way,2186 strainCons44way,572 strainCons44way,586 strainCons44way,1347 strainCons44way,1781 variantMuts,913 variantMuts,1316 sets augustusGene,158 primers,7 primers,64 primers,74 primers,188 primers,254 rapid,154 targets,39 targets,76 sette epitopes,328 iedb,111 setting Q0_tracks,758 Q1_tracks,760 Q2_tracks,760 Q3_tracks,760 galaxyEna,760 galaxyEnaQ0Ba-1,756 galaxyEnaQ0Ba-1-1,756 galaxyEnaQ0Ba-1-1-11,756 galaxyEnaQ0Ba-1-17,756 galaxyEnaQ0Ba-2,756 galaxyEnaQ1Ay-4,756 galaxyEnaQ1Ay-4-2,756 galaxyEnaQ1Ay-4-2-2,756 galaxyEnaQ1Ay-43,756 galaxyEnaQ1Ba-1-17,756 galaxyEnaQ2Ay-120,756 galaxyEnaQ2Ay-122,756 galaxyEnaQ2Ay-4,756 galaxyEnaQ2Ay-5,756 galaxyEnaQ2Ay-6,756 galaxyEnaQ3Ay-4,756 galaxyEnaQ3Ay-5,756 galaxyEnaQ3Ay-9,756 galaxyEnaQ3B-1-1-7,756 galaxyEnaQ3B-1-617-2,756 vaccines,161 settings cpgIslandExt,213 cpgIslandExtUnmasked,216 cpgIslandSuper,213 kimNp,77 multiz7way,284 pyle,210 strainCons119way,637 strainCons44way,585 several Q0_tracks,829 Q1_tracks,831 Q2_tracks,831 Q3_tracks,831 cd8escape,96 galaxyEna,831 galaxyEnaQ0Ba-1,827 galaxyEnaQ0Ba-1-1,827 galaxyEnaQ0Ba-1-1-11,827 galaxyEnaQ0Ba-1-17,827 galaxyEnaQ0Ba-2,827 galaxyEnaQ1Ay-4,827 galaxyEnaQ1Ay-4-2,827 galaxyEnaQ1Ay-4-2-2,827 galaxyEnaQ1Ay-43,827 galaxyEnaQ1Ba-1-17,827 galaxyEnaQ2Ay-120,827 galaxyEnaQ2Ay-122,827 galaxyEnaQ2Ay-4,827 galaxyEnaQ2Ay-5,827 galaxyEnaQ2Ay-6,827 galaxyEnaQ3Ay-4,827 galaxyEnaQ3Ay-5,827 galaxyEnaQ3Ay-9,827 galaxyEnaQ3B-1-1-7,827 galaxyEnaQ3B-1-617-2,827 microdel,110 nextstrainParsimony,180 nextstrainSamples,216 nextstrainSamples,619 pond,28 pond,73 sarsCov2PhyloPub,746 strainCons119way,1985 strainCons44way,1580 severe swift,70 variantMuts,1378 severity problematicSites,129 sgmrnas kimTranscripts,43 transcriptome,35 sgourakis epitopes,311 rosettaMhc,335 rosettaMhc,355 rosettaMhc,364 rosettaMhc,383 rosettaMhc,386 rosettaMhc,394 shaanxi2011 strainCons44way,1017 shades Q0_tracks,471 Q1_tracks,473 Q2_tracks,473 Q3_tracks,473 abEscape,399 bloomEscMabAvg,403 bloomEscMax,409 bloomEscSerumAvg,404 bloomEscTop,407 escape,406 galaxyEna,473 galaxyEnaQ0Ba-1,469 galaxyEnaQ0Ba-1-1,469 galaxyEnaQ0Ba-1-1-11,469 galaxyEnaQ0Ba-1-17,469 galaxyEnaQ0Ba-2,469 galaxyEnaQ1Ay-4,469 galaxyEnaQ1Ay-4-2,469 galaxyEnaQ1Ay-4-2-2,469 galaxyEnaQ1Ay-43,469 galaxyEnaQ1Ba-1-17,469 galaxyEnaQ2Ay-120,469 galaxyEnaQ2Ay-122,469 galaxyEnaQ2Ay-4,469 galaxyEnaQ2Ay-5,469 galaxyEnaQ2Ay-6,469 galaxyEnaQ3Ay-4,469 galaxyEnaQ3Ay-5,469 galaxyEnaQ3Ay-9,469 galaxyEnaQ3B-1-1-7,469 galaxyEnaQ3B-1-617-2,469 mccoy,399 rappuoli,406 shading Q0_tracks,424 Q1_tracks,426 Q2_tracks,426 Q3_tracks,426 bloomEscTop,16 galaxyEna,426 galaxyEnaQ0Ba-1,422 galaxyEnaQ0Ba-1-1,422 galaxyEnaQ0Ba-1-1-11,422 galaxyEnaQ0Ba-1-17,422 galaxyEnaQ0Ba-2,422 galaxyEnaQ1Ay-4,422 galaxyEnaQ1Ay-4-2,422 galaxyEnaQ1Ay-4-2-2,422 galaxyEnaQ1Ay-43,422 galaxyEnaQ1Ba-1-17,422 galaxyEnaQ2Ay-120,422 galaxyEnaQ2Ay-122,422 galaxyEnaQ2Ay-4,422 galaxyEnaQ2Ay-5,422 galaxyEnaQ2Ay-6,422 galaxyEnaQ3Ay-4,422 galaxyEnaQ3Ay-5,422 galaxyEnaQ3Ay-9,422 galaxyEnaQ3B-1-1-7,422 galaxyEnaQ3B-1-617-2,422 shank pond,262 shannon Entropy,1 Entropy,3 pyle,151 pyle,155 pyle,176 pyle,203 shaojun icshape,191 shape Entropy,10 SHAPE,1 SHAPE,3 pyle,1 pyle,5 pyle,42 pyle,77 pyle,81 pyle,101 pyle,106 pyle,170 shape_reactivity pyle,222 share pbmShanghai,302 shared recomb,119 treangen,284 sharing kimNp,113 kimRnaMod,238 nextstrainClade,223 nextstrainClade,236 nextstrainFreq,356 nextstrainFreq,371 nextstrainGene,172 nextstrainGene,185 nextstrainParsimony,413 nextstrainParsimony,435 nextstrainSamples,890 nextstrainSamples,912 recomb,318 sarsCov2Phylo,826 sarsCov2Phylo,864 sarsCov2PhyloPub,909 sarsCov2PhyloPub,970 variantMuts,1172 sheng-ce igg,10 igm,10 pbmShanghai,19 shindyalov pdb,145 short IgG_Z-score-_COVID-19_patients,24 IgM_Z-score-_COVID-19_patients,24 bpmIggCovidSum,33 bpmIgmCovidSum,33 pbm,33 pbmShanghai,36 strainCons119way,1943 strainCons44way,1538 unipCov2AliSwissprot,86 unipCov2Chain,271 unipCov2DisulfBond,267 unipCov2Domain,266 unipCov2Interest,58 unipCov2LocCytopl,266 unipCov2LocExtra,266 unipCov2LocSignal,267 unipCov2LocTransMemb,267 unipCov2Modif,270 unipCov2Mut,267 unipCov2Other,267 unipCov2Repeat,265 unipCov2Struct,269 shorten sarsCov2PhyloPub,756 should PhyloCSF_smooth,273 PhyloCSF_smooth,678 PhyloCSFpower,288 PhyloCSFpower,640 Q0_tracks,451 Q0_tracks,467 Q1_tracks,453 Q1_tracks,469 Q2_tracks,453 Q2_tracks,469 Q3_tracks,453 Q3_tracks,469 abEscape,305 bloomEscMabAvg,309 bloomEscMax,315 bloomEscSerumAvg,310 bloomEscTop,313 escape,312 galaxyEna,453 galaxyEna,469 galaxyEnaQ0Ba-1,449 galaxyEnaQ0Ba-1,465 galaxyEnaQ0Ba-1-1,449 galaxyEnaQ0Ba-1-1,465 galaxyEnaQ0Ba-1-1-11,449 galaxyEnaQ0Ba-1-1-11,465 galaxyEnaQ0Ba-1-17,449 galaxyEnaQ0Ba-1-17,465 galaxyEnaQ0Ba-2,449 galaxyEnaQ0Ba-2,465 galaxyEnaQ1Ay-4,449 galaxyEnaQ1Ay-4,465 galaxyEnaQ1Ay-4-2,449 galaxyEnaQ1Ay-4-2,465 galaxyEnaQ1Ay-4-2-2,449 galaxyEnaQ1Ay-4-2-2,465 galaxyEnaQ1Ay-43,449 galaxyEnaQ1Ay-43,465 galaxyEnaQ1Ba-1-17,449 galaxyEnaQ1Ba-1-17,465 galaxyEnaQ2Ay-120,449 galaxyEnaQ2Ay-120,465 galaxyEnaQ2Ay-122,449 galaxyEnaQ2Ay-122,465 galaxyEnaQ2Ay-4,449 galaxyEnaQ2Ay-4,465 galaxyEnaQ2Ay-5,449 galaxyEnaQ2Ay-5,465 galaxyEnaQ2Ay-6,449 galaxyEnaQ2Ay-6,465 galaxyEnaQ3Ay-4,449 galaxyEnaQ3Ay-4,465 galaxyEnaQ3Ay-5,449 galaxyEnaQ3Ay-5,465 galaxyEnaQ3Ay-9,449 galaxyEnaQ3Ay-9,465 galaxyEnaQ3B-1-1-7,449 galaxyEnaQ3B-1-1-7,465 galaxyEnaQ3B-1-617-2,449 galaxyEnaQ3B-1-617-2,465 mccoy,305 phyloGenes,469 rappuoli,312 sarsCov2Phylo,808 transcriptome,321 shoura vaccines,514 show Calu3_07hpi,67 Calu3_07hpi,273 IgG_Z-score-_COVID-19_patients,191 IgM_Z-score-_COVID-19_patients,191 ORFs,65 ORFs,271 PhyloCSF_smooth,8 PhyloCSFpower,23 Q0_tracks,713 Q1_tracks,715 Q2_tracks,715 Q3_tracks,715 Vero6_05hpi,67 Vero6_05hpi,273 Vero6_24hpi,67 Vero6_24hpi,273 abEscape,21 abEscape,237 abEscape,412 abEscape,490 abEscape,525 abEscape,560 bloomEscMabAvg,25 bloomEscMabAvg,241 bloomEscMabAvg,416 bloomEscMabAvg,494 bloomEscMabAvg,529 bloomEscMabAvg,564 bloomEscMax,31 bloomEscMax,247 bloomEscMax,422 bloomEscMax,500 bloomEscMax,535 bloomEscMax,570 bloomEscSerumAvg,26 bloomEscSerumAvg,242 bloomEscSerumAvg,417 bloomEscSerumAvg,495 bloomEscSerumAvg,530 bloomEscSerumAvg,565 bloomEscTop,29 bloomEscTop,245 bloomEscTop,420 bloomEscTop,498 bloomEscTop,533 bloomEscTop,568 bpmIggCovidSum,200 bpmIgmCovidSum,200 escape,18 escape,28 escape,244 escape,419 escape,497 escape,532 escape,567 galaxyEna,715 galaxyEnaQ0Ba-1,711 galaxyEnaQ0Ba-1-1,711 galaxyEnaQ0Ba-1-1-11,711 galaxyEnaQ0Ba-1-17,711 galaxyEnaQ0Ba-2,711 galaxyEnaQ1Ay-4,711 galaxyEnaQ1Ay-4-2,711 galaxyEnaQ1Ay-4-2-2,711 galaxyEnaQ1Ay-43,711 galaxyEnaQ1Ba-1-17,711 galaxyEnaQ2Ay-120,711 galaxyEnaQ2Ay-122,711 galaxyEnaQ2Ay-4,711 galaxyEnaQ2Ay-5,711 galaxyEnaQ2Ay-6,711 galaxyEnaQ3Ay-4,711 galaxyEnaQ3Ay-5,711 galaxyEnaQ3Ay-9,711 galaxyEnaQ3B-1-1-7,711 galaxyEnaQ3B-1-617-2,711 kimNp,52 mccoy,21 mccoy,237 mccoy,412 mccoy,490 mccoy,525 mccoy,560 nextstrainSamples,479 pbm,200 pbmShanghai,128 pbmShanghai,286 phyloGenes,15 phyloGenes,162 problematicSites,184 rappuoli,28 rappuoli,244 rappuoli,419 rappuoli,497 rappuoli,532 rappuoli,567 resist,80 resistPred,150 sarsCov2Phylo,509 sarsCov2PhyloPub,538 treangen,185 unipCov2AliSwissprot,141 unipCov2Chain,112 unipCov2Chain,347 unipCov2DisulfBond,108 unipCov2DisulfBond,343 unipCov2Domain,107 unipCov2Domain,342 unipCov2LocCytopl,107 unipCov2LocCytopl,342 unipCov2LocExtra,107 unipCov2LocExtra,342 unipCov2LocSignal,108 unipCov2LocSignal,343 unipCov2LocTransMemb,108 unipCov2LocTransMemb,343 unipCov2Modif,111 unipCov2Modif,346 unipCov2Mut,108 unipCov2Mut,343 unipCov2Other,108 unipCov2Other,343 unipCov2Repeat,106 unipCov2Repeat,341 unipCov2Struct,110 unipCov2Struct,345 vaccines,174 variantMuts,18 weizmanOrfs,73 weizmanOrfs,279 showing cd8escape,57 sarsCov2Phylo,490 sarsCov2PhyloPub,519 shown IgG_Z-score-_COVID-19_patients,71 IgG_Z-score-_COVID-19_patients,106 IgM_Z-score-_COVID-19_patients,71 IgM_Z-score-_COVID-19_patients,106 PhyloCSF_smooth,166 PhyloCSFpower,181 Q0_tracks,734 Q1_tracks,736 Q2_tracks,736 Q3_tracks,736 abEscape,52 abEscape,379 addgene,110 bloomEscMabAvg,56 bloomEscMabAvg,383 bloomEscMax,62 bloomEscMax,389 bloomEscSerumAvg,57 bloomEscSerumAvg,384 bloomEscTop,60 bloomEscTop,387 bpmIggCovidSum,80 bpmIggCovidSum,115 bpmIgmCovidSum,80 bpmIgmCovidSum,115 crisprDet,68 crisprDet,99 crisprDet,127 escape,59 escape,386 galaxyEna,736 galaxyEnaQ0Ba-1,732 galaxyEnaQ0Ba-1-1,732 galaxyEnaQ0Ba-1-1-11,732 galaxyEnaQ0Ba-1-17,732 galaxyEnaQ0Ba-2,732 galaxyEnaQ1Ay-4,732 galaxyEnaQ1Ay-4-2,732 galaxyEnaQ1Ay-4-2-2,732 galaxyEnaQ1Ay-43,732 galaxyEnaQ1Ba-1-17,732 galaxyEnaQ2Ay-120,732 galaxyEnaQ2Ay-122,732 galaxyEnaQ2Ay-4,732 galaxyEnaQ2Ay-5,732 galaxyEnaQ2Ay-6,732 galaxyEnaQ3Ay-4,732 galaxyEnaQ3Ay-5,732 galaxyEnaQ3Ay-9,732 galaxyEnaQ3B-1-1-7,732 galaxyEnaQ3B-1-617-2,732 gold,101 kimIvtCov,58 kimIvtCov,96 kimTranscripts,114 mccoy,52 mccoy,379 microdel,38 multiz7way,137 multiz7way,160 multiz7way,382 nextstrainClade,105 nextstrainSamples,447 pbm,80 pbm,115 pbmShanghai,172 pbmShanghai,212 pdb,58 pdb,95 pond,63 publicAnnots,76 rappuoli,59 rappuoli,386 recomb,75 sarsCov2Phylo,416 sarsCov2PhyloPub,445 strainCons119way,338 strainCons119way,352 strainCons119way,486 strainCons119way,509 strainCons119way,724 strainCons44way,286 strainCons44way,300 strainCons44way,434 strainCons44way,457 strainCons44way,672 transcriptome,106 treangen,101 unipCov2Chain,315 unipCov2DisulfBond,311 unipCov2Domain,310 unipCov2LocCytopl,310 unipCov2LocExtra,310 unipCov2LocSignal,311 unipCov2LocTransMemb,311 unipCov2Modif,314 unipCov2Mut,311 unipCov2Other,311 unipCov2Repeat,309 unipCov2Struct,313 shows Calu3_07hpi,20 Calu3_07hpi,60 IgG_Z-score-_COVID-19_patients,17 IgM_Z-score-_COVID-19_patients,17 ORFs,18 ORFs,58 PhyloCSF_smooth,129 PhyloCSF_smooth,183 PhyloCSF_smooth,590 PhyloCSFpower,144 PhyloCSFpower,198 PhyloCSFpower,605 Vero6_05hpi,20 Vero6_05hpi,60 Vero6_24hpi,20 Vero6_24hpi,60 addgene,16 addgene,135 artic,16 artic,42 articV4,16 articV4,45 articV4_1,16 articV4_1,56 augustusGene,15 augustusGene,108 bpmIggCovidSum,26 bpmIgmCovidSum,26 cas13Crispr,12 contacts,20 crisprDet,12 gap,10 gc5BaseBw,16 genscan,13 gold,11 gordon2,18 icshape,13 iedb,13 kimIvtCov,20 kimNp,21 kimRnaMod,29 kimTranscripts,21 microdel,12 multiz7way,18 multiz7way,333 ncbiProducts,43 nextstrainFreq,81 nextstrainParsimony,247 nextstrainSamples,328 nextstrainSamples,837 pbm,26 pbmShanghai,29 pdb,16 pdb,78 phyloGenes,76 phyloGenes,151 pond,19 poranHla1,11 poranHla1,98 poranHla1,111 poranHla2,11 poranHla2,98 poranHla2,111 potPathoIndel,21 primers,14 problematicSites,87 publicAnnots,16 pyle,17 rapid,18 rapid,169 recomb,16 recomb,51 resistPred,102 rnaStructRangan,14 sarsCov2Phylo,333 sarsCov2PhyloPub,344 sarsCov2PhyloPub,370 strainCons119way,44 strainCons119way,676 strainCons44way,41 strainCons44way,624 swift,13 swift,106 targets,14 transcriptome,13 treangen,18 unipCov2AliSwissprot,17 unipCov2AliSwissprot,31 unipCov2AliSwissprot,110 unipCov2Chain,16 unipCov2Chain,295 unipCov2DisulfBond,12 unipCov2DisulfBond,291 unipCov2Domain,11 unipCov2Domain,290 unipCov2Interest,13 unipCov2Interest,65 unipCov2LocCytopl,11 unipCov2LocCytopl,290 unipCov2LocExtra,11 unipCov2LocExtra,290 unipCov2LocSignal,12 unipCov2LocSignal,291 unipCov2LocTransMemb,12 unipCov2LocTransMemb,291 unipCov2Modif,15 unipCov2Modif,294 unipCov2Mut,12 unipCov2Mut,291 unipCov2Other,12 unipCov2Other,291 unipCov2Repeat,10 unipCov2Repeat,289 unipCov2Struct,14 unipCov2Struct,293 vaccines,14 varskip,16 weizmanOrfs,26 weizmanOrfs,66 shrew strainCons119way,1297 shubin IgG_Z-score-_COVID-19_patients,420 IgM_Z-score-_COVID-19_patients,420 bpmIggCovidSum,429 bpmIgmCovidSum,429 pbm,429 side gap,87 sidney epitopes,320 siepel multiz7way,859 multiz7way,1015 multiz7way,1036 multiz7way,1079 strainCons119way,1833 strainCons119way,1964 strainCons119way,2237 strainCons119way,2393 strainCons119way,2414 strainCons119way,2457 strainCons44way,1428 strainCons44way,1559 strainCons44way,1832 strainCons44way,1988 strainCons44way,2009 strainCons44way,2052 sierra microdel,271 signal Calu3_07hpi,69 IgG_Z-score-_COVID-19_patients,183 IgM_Z-score-_COVID-19_patients,183 ORFs,67 Vero6_05hpi,69 Vero6_24hpi,69 augustusGene,48 augustusGene,63 bpmIggCovidSum,192 bpmIgmCovidSum,192 pbm,192 pbmShanghai,124 pbmShanghai,229 pbmShanghai,239 pbmShanghai,284 recomb,175 unipCov2AliSwissprot,102 unipCov2Chain,123 unipCov2Chain,287 unipCov2Chain,322 unipCov2Chain,373 unipCov2DisulfBond,119 unipCov2DisulfBond,283 unipCov2DisulfBond,318 unipCov2DisulfBond,369 unipCov2Domain,118 unipCov2Domain,282 unipCov2Domain,317 unipCov2Domain,368 unipCov2LocCytopl,118 unipCov2LocCytopl,282 unipCov2LocCytopl,317 unipCov2LocCytopl,368 unipCov2LocExtra,118 unipCov2LocExtra,282 unipCov2LocExtra,317 unipCov2LocExtra,368 unipCov2LocSignal,1 unipCov2LocSignal,4 unipCov2LocSignal,119 unipCov2LocSignal,283 unipCov2LocSignal,318 unipCov2LocSignal,369 unipCov2LocTransMemb,119 unipCov2LocTransMemb,283 unipCov2LocTransMemb,318 unipCov2LocTransMemb,369 unipCov2Modif,122 unipCov2Modif,286 unipCov2Modif,321 unipCov2Modif,372 unipCov2Mut,119 unipCov2Mut,283 unipCov2Mut,318 unipCov2Mut,369 unipCov2Other,119 unipCov2Other,283 unipCov2Other,318 unipCov2Other,369 unipCov2Repeat,117 unipCov2Repeat,281 unipCov2Repeat,316 unipCov2Repeat,367 unipCov2Struct,121 unipCov2Struct,285 unipCov2Struct,320 unipCov2Struct,371 weizmanOrfs,75 signals genscan,34 genscan,187 potPathoIndel,57 recomb,239 signature phyloGenes,164 signatures PhyloCSF_smooth,29 PhyloCSFpower,44 strainCons119way,279 strainCons44way,227 significance gordon2,152 recomb,255 spikeMuts,157 significant variantMuts,138 significantly cpgIslandExt,156 cpgIslandExtUnmasked,159 cpgIslandSuper,156 spikeMuts,87 silander rapid,345 silico swift,81 sim rnaStructRangan,89 similar pdb,48 strainCons119way,1915 strainCons44way,1510 variantMuts,208 similarity epitopes,237 multiz7way,748 strainCons119way,1508 strainCons44way,1178 similarly PhyloCSF_smooth,615 PhyloCSFpower,626 simple simpleRepeat,1 simpleRepeat,3 simpleRepeat,15 simplified sarsCov2Phylo,159 sarsCov2PhyloPub,165 since PhyloCSF_smooth,478 PhyloCSFpower,493 Q0_tracks,658 Q1_tracks,660 Q2_tracks,660 Q3_tracks,660 galaxyEna,660 galaxyEnaQ0Ba-1,656 galaxyEnaQ0Ba-1-1,656 galaxyEnaQ0Ba-1-1-11,656 galaxyEnaQ0Ba-1-17,656 galaxyEnaQ0Ba-2,656 galaxyEnaQ1Ay-4,656 galaxyEnaQ1Ay-4-2,656 galaxyEnaQ1Ay-4-2-2,656 galaxyEnaQ1Ay-43,656 galaxyEnaQ1Ba-1-17,656 galaxyEnaQ2Ay-120,656 galaxyEnaQ2Ay-122,656 galaxyEnaQ2Ay-4,656 galaxyEnaQ2Ay-5,656 galaxyEnaQ2Ay-6,656 galaxyEnaQ3Ay-4,656 galaxyEnaQ3Ay-5,656 galaxyEnaQ3Ay-9,656 galaxyEnaQ3B-1-1-7,656 galaxyEnaQ3B-1-617-2,656 pbmShanghai,201 transcriptome,196 singh Q0_tracks,1311 Q1_tracks,1313 Q2_tracks,1313 Q3_tracks,1313 galaxyEna,1313 galaxyEnaQ0Ba-1,1309 galaxyEnaQ0Ba-1-1,1309 galaxyEnaQ0Ba-1-1-11,1309 galaxyEnaQ0Ba-1-17,1309 galaxyEnaQ0Ba-2,1309 galaxyEnaQ1Ay-4,1309 galaxyEnaQ1Ay-4-2,1309 galaxyEnaQ1Ay-4-2-2,1309 galaxyEnaQ1Ay-43,1309 galaxyEnaQ1Ba-1-17,1309 galaxyEnaQ2Ay-120,1309 galaxyEnaQ2Ay-122,1309 galaxyEnaQ2Ay-4,1309 galaxyEnaQ2Ay-5,1309 galaxyEnaQ2Ay-6,1309 galaxyEnaQ3Ay-4,1309 galaxyEnaQ3Ay-5,1309 galaxyEnaQ3Ay-9,1309 galaxyEnaQ3B-1-1-7,1309 galaxyEnaQ3B-1-617-2,1309 single abEscape,205 bloomEscMabAvg,209 bloomEscMax,215 bloomEscSerumAvg,210 bloomEscTop,213 escape,212 mccoy,205 nextstrainParsimony,19 problematicSites,201 problematicSites,395 rappuoli,19 rappuoli,212 recomb,115 rnaStructRangan,62 swift,55 treangen,36 treangen,55 single-coverage strainCons119way,1756 strainCons44way,1351 single-nucleotide nextstrainParsimony,253 sarsCov2Phylo,479 sarsCov2PhyloPub,508 variantMuts,847 variantMuts,874 single-stranded pyle,115 single-tube swift,23 single_src problematicSites,388 site Q0_tracks,154 Q0_tracks,262 Q1_tracks,156 Q1_tracks,264 Q2_tracks,156 Q2_tracks,264 Q3_tracks,156 Q3_tracks,264 galaxyEna,156 galaxyEna,264 galaxyEnaQ0Ba-1,152 galaxyEnaQ0Ba-1,260 galaxyEnaQ0Ba-1-1,152 galaxyEnaQ0Ba-1-1,260 galaxyEnaQ0Ba-1-1-11,152 galaxyEnaQ0Ba-1-1-11,260 galaxyEnaQ0Ba-1-17,152 galaxyEnaQ0Ba-1-17,260 galaxyEnaQ0Ba-2,152 galaxyEnaQ0Ba-2,260 galaxyEnaQ1Ay-4,152 galaxyEnaQ1Ay-4,260 galaxyEnaQ1Ay-4-2,152 galaxyEnaQ1Ay-4-2,260 galaxyEnaQ1Ay-4-2-2,152 galaxyEnaQ1Ay-4-2-2,260 galaxyEnaQ1Ay-43,152 galaxyEnaQ1Ay-43,260 galaxyEnaQ1Ba-1-17,152 galaxyEnaQ1Ba-1-17,260 galaxyEnaQ2Ay-120,152 galaxyEnaQ2Ay-120,260 galaxyEnaQ2Ay-122,152 galaxyEnaQ2Ay-122,260 galaxyEnaQ2Ay-4,152 galaxyEnaQ2Ay-4,260 galaxyEnaQ2Ay-5,152 galaxyEnaQ2Ay-5,260 galaxyEnaQ2Ay-6,152 galaxyEnaQ2Ay-6,260 galaxyEnaQ3Ay-4,152 galaxyEnaQ3Ay-4,260 galaxyEnaQ3Ay-5,152 galaxyEnaQ3Ay-5,260 galaxyEnaQ3Ay-9,152 galaxyEnaQ3Ay-9,260 galaxyEnaQ3B-1-1-7,152 galaxyEnaQ3B-1-1-7,260 galaxyEnaQ3B-1-617-2,152 galaxyEnaQ3B-1-617-2,260 genscan,157 iedb,85 kimTranscripts,64 pond,106 pond,153 pond,224 resistPred,89 resistPred,112 strainCons119way,1811 strainCons119way,1823 strainCons119way,1859 strainCons44way,1406 strainCons44way,1418 strainCons44way,1454 transcriptome,56 transcriptome,140 transcriptome,147 transcriptome,258 windowmaskerSdust,45 site-specific recomb,264 site_in_gene pond,209 sites Calu3_07hpi,139 Calu3_07hpi,161 Negative_Selection,3 ORFs,137 ORFs,159 PhyloCSF_smooth,587 PhyloCSFpower,602 Positive_Selection,3 TRS_sites,2 Vero6_05hpi,139 Vero6_05hpi,161 Vero6_24hpi,139 Vero6_24hpi,161 abEscape,347 augustusGene,54 augustusGene,59 bloomEscMabAvg,351 bloomEscMax,357 bloomEscSerumAvg,352 bloomEscTop,355 cpgIslandExt,34 cpgIslandExtUnmasked,37 cpgIslandSuper,34 escape,354 mccoy,347 multiz7way,994 nextstrainParsimony,241 pond,79 pond,174 pond,181 pond,202 problematicSites,2 problematicSites,4 problematicSites,22 problematicSites,43 problematicSites,59 problematicSites,82 problematicSites,148 problematicSites,182 problematicSites,236 problematicSites,268 problematicSites,274 problematicSites,418 problematicSites,461 problematicSitesCaution,3 problematicSitesMask,3 rappuoli,354 resistPred,40 sarsCov2Phylo,614 sarsCov2Phylo,632 sarsCov2PhyloPub,641 sarsCov2PhyloPub,656 strainCons119way,243 strainCons119way,259 strainCons119way,299 strainCons119way,328 strainCons119way,342 strainCons119way,1696 strainCons119way,1736 strainCons119way,1745 strainCons119way,1918 strainCons119way,2372 strainCons44way,191 strainCons44way,207 strainCons44way,247 strainCons44way,276 strainCons44way,290 strainCons44way,1291 strainCons44way,1331 strainCons44way,1340 strainCons44way,1513 strainCons44way,1967 transcriptome,126 transcriptome,176 transcriptome,243 unipCov2Chain,201 unipCov2Chain,213 unipCov2Chain,387 unipCov2Chain,394 unipCov2DisulfBond,197 unipCov2DisulfBond,209 unipCov2DisulfBond,383 unipCov2DisulfBond,390 unipCov2Domain,196 unipCov2Domain,208 unipCov2Domain,382 unipCov2Domain,389 unipCov2LocCytopl,196 unipCov2LocCytopl,208 unipCov2LocCytopl,382 unipCov2LocCytopl,389 unipCov2LocExtra,196 unipCov2LocExtra,208 unipCov2LocExtra,382 unipCov2LocExtra,389 unipCov2LocSignal,197 unipCov2LocSignal,209 unipCov2LocSignal,383 unipCov2LocSignal,390 unipCov2LocTransMemb,197 unipCov2LocTransMemb,209 unipCov2LocTransMemb,383 unipCov2LocTransMemb,390 unipCov2Modif,8 unipCov2Modif,200 unipCov2Modif,212 unipCov2Modif,386 unipCov2Modif,393 unipCov2Mut,197 unipCov2Mut,209 unipCov2Mut,383 unipCov2Mut,390 unipCov2Other,197 unipCov2Other,209 unipCov2Other,383 unipCov2Other,390 unipCov2Repeat,195 unipCov2Repeat,207 unipCov2Repeat,381 unipCov2Repeat,388 unipCov2Struct,199 unipCov2Struct,211 unipCov2Struct,385 unipCov2Struct,392 weizmanOrfs,145 weizmanOrfs,167 six kimNp,62 size multiz7way,377 multiz7way,391 strainCons119way,719 strainCons119way,733 strainCons119way,1941 strainCons44way,667 strainCons44way,681 strainCons44way,1536 vaccines,120 sizes multiz7way,404 strainCons119way,746 strainCons44way,694 sj abEscape,732 bloomEscMabAvg,736 bloomEscMax,742 bloomEscSerumAvg,737 bloomEscTop,740 escape,739 mccoy,732 pbmShanghai,511 rappuoli,739 sk Starr_Bloom,243 Starr_Bloom_bind,237 abEscape,738 bloomEscMabAvg,742 bloomEscMax,748 bloomEscSerumAvg,743 bloomEscTop,746 escape,745 mccoy,738 multiz7way,932 rappuoli,745 strainCons119way,2310 strainCons44way,1905 sliding cas13Crispr,238 strainCons119way,1937 strainCons44way,1532 slightly transcriptome,208 variantMuts,60 slodkowicz problematicSites,547 sarsCov2Phylo,1058 sarsCov2PhyloPub,1178 slow sarsCov2PhyloFull,2 sarsCov2PhyloFull,12 sarsCov2PhyloPubAllFull,4 sarsCov2PhyloPubAllFull,12 slower strainCons119way,320 strainCons44way,268 sm nextstrainClade,247 nextstrainFreq,382 nextstrainGene,196 nextstrainParsimony,449 nextstrainSamples,1002 strainCons119way,1296 small kimRnaMod,49 kimRnaMod,76 multiz7way,311 nextstrainClade,117 problematicSites,284 targets,199 smaller vaccines,154 smit multiz7way,1175 multiz7way,1249 strainCons119way,2553 strainCons119way,2627 strainCons44way,2148 strainCons44way,2222 smith recomb,334 smooth strainCons119way,232 strainCons44way,180 smoothed PhyloCSF_minus_1,1 PhyloCSF_minus_1,3 PhyloCSF_minus_2,1 PhyloCSF_minus_2,3 PhyloCSF_minus_3,1 PhyloCSF_minus_3,3 PhyloCSF_plus_1,1 PhyloCSF_plus_1,4 PhyloCSF_plus_2,1 PhyloCSF_plus_2,4 PhyloCSF_plus_3,1 PhyloCSF_plus_3,4 PhyloCSF_smooth,126 PhyloCSF_smooth,141 PhyloCSF_smooth,432 PhyloCSFpower,141 PhyloCSFpower,156 PhyloCSFpower,447 smyth cd8escape,197 snap-shot Calu3_07hpi,183 ORFs,181 Vero6_05hpi,183 Vero6_24hpi,183 weizmanOrfs,189 snerli rosettaMhc,369 snp treangen,4 treangen,89 snps treangen,2 treangen,21 treangen,24 snu01 strainCons119way,1273 snuderl microdel,257 snv Q0_tracks,488 Q1_tracks,490 Q2_tracks,490 Q3_tracks,490 galaxyEna,490 galaxyEnaQ0Ba-1,486 galaxyEnaQ0Ba-1-1,486 galaxyEnaQ0Ba-1-1-11,486 galaxyEnaQ0Ba-1-17,486 galaxyEnaQ0Ba-2,486 galaxyEnaQ1Ay-4,486 galaxyEnaQ1Ay-4-2,486 galaxyEnaQ1Ay-4-2-2,486 galaxyEnaQ1Ay-43,486 galaxyEnaQ1Ba-1-17,486 galaxyEnaQ2Ay-120,486 galaxyEnaQ2Ay-122,486 galaxyEnaQ2Ay-4,486 galaxyEnaQ2Ay-5,486 galaxyEnaQ2Ay-6,486 galaxyEnaQ3Ay-4,486 galaxyEnaQ3Ay-5,486 galaxyEnaQ3Ay-9,486 galaxyEnaQ3B-1-1-7,486 galaxyEnaQ3B-1-617-2,486 so nextstrainGene,60 nextstrainSamples,83 nextstrainSamples,218 pdb,46 problematicSites,140 social spikeMuts,363 spikeMuts,399 soe.ucsc.edu publicAnnots,81 software epitopes,30 recomb,23 sarsCov2Phylo,1029 sarsCov2PhyloPub,1149 some Q0_tracks,156 Q1_tracks,158 Q2_tracks,158 Q3_tracks,158 addgene,43 addgene,61 addgene,76 articV4_1,36 cpgIslandExt,134 cpgIslandExtUnmasked,137 cpgIslandSuper,134 galaxyEna,158 galaxyEnaQ0Ba-1,154 galaxyEnaQ0Ba-1-1,154 galaxyEnaQ0Ba-1-1-11,154 galaxyEnaQ0Ba-1-17,154 galaxyEnaQ0Ba-2,154 galaxyEnaQ1Ay-4,154 galaxyEnaQ1Ay-4-2,154 galaxyEnaQ1Ay-4-2-2,154 galaxyEnaQ1Ay-43,154 galaxyEnaQ1Ba-1-17,154 galaxyEnaQ2Ay-120,154 galaxyEnaQ2Ay-122,154 galaxyEnaQ2Ay-4,154 galaxyEnaQ2Ay-5,154 galaxyEnaQ2Ay-6,154 galaxyEnaQ3Ay-4,154 galaxyEnaQ3Ay-5,154 galaxyEnaQ3Ay-9,154 galaxyEnaQ3B-1-1-7,154 galaxyEnaQ3B-1-617-2,154 nextstrainSamples,566 nextstrainSamples,805 pond,117 problematicSites,152 problematicSites,230 sometimes PhyloCSF_smooth,598 problematicSites,260 simpleRepeat,50 somewhat pdb,47 soon pond,52 sort cpgIslandExt,483 cpgIslandExtUnmasked,486 cpgIslandSuper,483 vaccines,332 sorted unipCov2Chain,365 unipCov2DisulfBond,361 unipCov2Domain,360 unipCov2LocCytopl,360 unipCov2LocExtra,360 unipCov2LocSignal,361 unipCov2LocTransMemb,361 unipCov2Modif,364 unipCov2Mut,361 unipCov2Other,361 unipCov2Repeat,359 unipCov2Struct,363 sotrovimab resist,31 source cpgIslandExt,555 cpgIslandExtUnmasked,558 cpgIslandSuper,555 ncbiGeneBGP,93 ncbiGeneBGP,107 ncbiProducts,109 ncbiProducts,123 unipCov2AliSwissprot,245 unipCov2AliSwissprot,325 unipCov2AliSwissprot,339 unipCov2Chain,475 unipCov2Chain,555 unipCov2Chain,569 unipCov2DisulfBond,471 unipCov2DisulfBond,551 unipCov2DisulfBond,565 unipCov2Domain,470 unipCov2Domain,550 unipCov2Domain,564 unipCov2Interest,151 unipCov2Interest,231 unipCov2Interest,245 unipCov2LocCytopl,470 unipCov2LocCytopl,550 unipCov2LocCytopl,564 unipCov2LocExtra,470 unipCov2LocExtra,550 unipCov2LocExtra,564 unipCov2LocSignal,471 unipCov2LocSignal,551 unipCov2LocSignal,565 unipCov2LocTransMemb,471 unipCov2LocTransMemb,551 unipCov2LocTransMemb,565 unipCov2Modif,474 unipCov2Modif,554 unipCov2Modif,568 unipCov2Mut,471 unipCov2Mut,551 unipCov2Mut,565 unipCov2Other,471 unipCov2Other,551 unipCov2Other,565 unipCov2Repeat,469 unipCov2Repeat,549 unipCov2Repeat,563 unipCov2Struct,473 unipCov2Struct,553 unipCov2Struct,567 vaccines,415 vaccines,429 vaccines,534 windowmaskerSdust,33 sourced resist,37 sources primers,244 south variantMuts,293 variantMuts,1391 southern variantMuts,1407 sp02 strainCons119way,1169 space multiz7way,372 multiz7way,385 sarsCov2Phylo,87 sarsCov2PhyloPub,100 strainCons119way,714 strainCons119way,727 strainCons44way,662 strainCons44way,675 unipCov2AliSwissprot,446 unipCov2Chain,675 unipCov2DisulfBond,671 unipCov2Domain,670 unipCov2Interest,329 unipCov2LocCytopl,670 unipCov2LocExtra,670 unipCov2LocSignal,671 unipCov2LocTransMemb,671 unipCov2Modif,674 unipCov2Mut,671 unipCov2Other,671 unipCov2Repeat,669 unipCov2Struct,673 space-time multiz7way,1105 strainCons119way,2483 strainCons44way,2078 spaces gold,99 span pdb,122 transcriptome,286 spanning cd8escape,119 spatial recomb,246 special nextstrainParsimony,430 nextstrainSamples,907 sarsCov2Phylo,855 sarsCov2PhyloPub,961 specialized simpleRepeat,29 species PhyloCSF_smooth,200 PhyloCSF_smooth,213 PhyloCSF_smooth,308 PhyloCSF_smooth,313 PhyloCSF_smooth,326 PhyloCSFpower,215 PhyloCSFpower,228 PhyloCSFpower,323 PhyloCSFpower,328 PhyloCSFpower,341 augustusGene,166 augustusGene,173 augustusGene,181 augustusGene,186 augustusGene,200 augustusGene,229 augustusGene,244 kimTranscripts,128 kimTranscripts,255 multiz7way,93 multiz7way,258 multiz7way,274 multiz7way,279 multiz7way,426 multiz7way,469 multiz7way,483 multiz7way,497 multiz7way,506 multiz7way,519 multiz7way,532 multiz7way,538 multiz7way,545 multiz7way,562 multiz7way,568 primers,164 strainCons119way,442 strainCons119way,607 strainCons119way,623 strainCons119way,630 strainCons119way,776 strainCons119way,819 strainCons119way,833 strainCons119way,847 strainCons119way,856 strainCons119way,869 strainCons119way,882 strainCons119way,888 strainCons119way,895 strainCons119way,912 strainCons119way,918 strainCons119way,1783 strainCons119way,1888 strainCons44way,390 strainCons44way,555 strainCons44way,571 strainCons44way,578 strainCons44way,724 strainCons44way,767 strainCons44way,781 strainCons44way,795 strainCons44way,804 strainCons44way,817 strainCons44way,830 strainCons44way,836 strainCons44way,843 strainCons44way,860 strainCons44way,866 strainCons44way,1378 strainCons44way,1483 transcriptome,120 species-specific augustusGene,156 multiz7way,558 strainCons119way,908 strainCons44way,856 specific abEscape,565 addgene,256 bloomEscMabAvg,569 bloomEscMax,575 bloomEscSerumAvg,570 bloomEscTop,573 epitopes,253 escape,572 gap,33 gold,35 gordon2,125 mccoy,565 multiz7way,306 potPathoIndel,103 primers,158 primers,190 primers,227 problematicSites,71 rappuoli,572 simpleRepeat,53 spikeMuts,75 strainCons119way,649 strainCons44way,597 specifically poranHla1,68 poranHla2,68 specification gap,59 gold,58 specificity cas13Crispr,303 specificy cas13Crispr,125 specimen sarsCov2PhyloPub,933 spectral gordon2,170 spectrometry gordon2,59 spencer abEscape,784 bloomEscMabAvg,788 bloomEscMax,794 bloomEscSerumAvg,789 bloomEscTop,792 escape,791 mccoy,784 rappuoli,791 spieth multiz7way,1050 strainCons119way,2428 strainCons44way,2023 spike abEscape,80 abEscape,754 abEscape,814 bloomEscMabAvg,84 bloomEscMabAvg,758 bloomEscMabAvg,818 bloomEscMax,90 bloomEscMax,764 bloomEscMax,824 bloomEscSerumAvg,85 bloomEscSerumAvg,759 bloomEscSerumAvg,819 bloomEscTop,88 bloomEscTop,762 bloomEscTop,822 escape,87 escape,761 escape,821 mccoy,80 mccoy,754 mccoy,814 pbmShanghai,520 phyloGenes,205 pond,289 potPathoIndel,65 potPathoIndel,84 rappuoli,87 rappuoli,761 rappuoli,821 spikeMuts,1 spikeMuts,3 spikeMuts,17 spikeMuts,100 vaccines,559 variantMuts,1318 variantMuts,1388 spike-ins varskip2b,7 splice PhyloCSF_smooth,586 PhyloCSFpower,601 augustusGene,53 genscan,156 splicing augustusGene,123 genscan,33 genscan,186 split problematicSites,459 spontaneous cpgIslandExt,109 cpgIslandExtUnmasked,112 cpgIslandSuper,109 spotted IgG_Z-score-_COVID-19_patients,22 IgG_Z-score-_COVID-19_patients,86 IgM_Z-score-_COVID-19_patients,22 IgM_Z-score-_COVID-19_patients,86 bpmIggCovidSum,31 bpmIggCovidSum,95 bpmIgmCovidSum,31 bpmIgmCovidSum,95 pbm,31 pbm,95 pbmShanghai,34 pbmShanghai,152 pbmShanghai,205 spread epitopes,195 unipCov2Chain,45 unipCov2DisulfBond,41 unipCov2Domain,40 unipCov2LocCytopl,40 unipCov2LocExtra,40 unipCov2LocSignal,41 unipCov2LocTransMemb,41 unipCov2Modif,44 unipCov2Mut,41 unipCov2Other,41 unipCov2Repeat,39 unipCov2Struct,43 variantMuts,1374 spreadsheet primers,34 primers,120 primers,277 publicAnnots,22 publicAnnots,35 publicAnnots,51 rapid,197 spring multiz7way,862 spikeMuts,212 strainCons119way,2240 strainCons44way,1835 springer multiz7way,1098 strainCons119way,2476 strainCons44way,2071 squish sarsCov2PhyloPub,335 varskip,53 sra microdel,119 src cpgIslandExt,564 cpgIslandExtUnmasked,567 cpgIslandSuper,564 nextstrainClade,95 vaccines,347 srinivasan poranHla1,269 poranHla2,269 stability problematicSites,602 sarsCov2Phylo,1113 staff unipCov2AliSwissprot,71 unipCov2AliSwissprot,424 unipCov2Chain,41 unipCov2Chain,654 unipCov2DisulfBond,37 unipCov2DisulfBond,650 unipCov2Domain,36 unipCov2Domain,649 unipCov2Interest,43 unipCov2Interest,307 unipCov2LocCytopl,36 unipCov2LocCytopl,649 unipCov2LocExtra,36 unipCov2LocExtra,649 unipCov2LocSignal,37 unipCov2LocSignal,650 unipCov2LocTransMemb,37 unipCov2LocTransMemb,650 unipCov2Modif,40 unipCov2Modif,653 unipCov2Mut,37 unipCov2Mut,650 unipCov2Other,37 unipCov2Other,650 unipCov2Repeat,35 unipCov2Repeat,648 unipCov2Struct,39 unipCov2Struct,652 stage IgG_Z-score-_COVID-19_patients,39 IgG_Z-score-_COVID-19_patients,65 IgM_Z-score-_COVID-19_patients,39 IgM_Z-score-_COVID-19_patients,65 bpmIggCovidSum,48 bpmIggCovidSum,74 bpmIgmCovidSum,48 bpmIgmCovidSum,74 pbm,48 pbm,74 stages cpgIslandExt,90 cpgIslandExtUnmasked,93 cpgIslandSuper,90 pbmShanghai,78 stamped nextstrainFreq,38 nextstrainParsimony,55 standard pdb,80 poranHla1,113 poranHla2,113 standley sarsCov2Phylo,1023 sarsCov2PhyloPub,1143 stanford cas13Crispr,487 primers,387 vaccines,52 vaccines,68 vaccines,621 stanke augustusGene,103 augustusGene,251 augustusGene,284 augustusGene,286 augustusGene,316 stanley cas13Crispr,483 starr Starr_Bloom,173 Starr_Bloom,238 Starr_Bloom_bind,167 Starr_Bloom_bind,232 abEscape,149 abEscape,588 abEscape,696 abEscape,727 abEscape,825 bloomEscMabAvg,153 bloomEscMabAvg,592 bloomEscMabAvg,700 bloomEscMabAvg,731 bloomEscMabAvg,829 bloomEscMax,159 bloomEscMax,598 bloomEscMax,706 bloomEscMax,737 bloomEscMax,835 bloomEscSerumAvg,154 bloomEscSerumAvg,593 bloomEscSerumAvg,701 bloomEscSerumAvg,732 bloomEscSerumAvg,830 bloomEscTop,157 bloomEscTop,596 bloomEscTop,704 bloomEscTop,735 bloomEscTop,833 escape,156 escape,595 escape,703 escape,734 escape,832 mccoy,149 mccoy,588 mccoy,696 mccoy,727 mccoy,825 rappuoli,156 rappuoli,595 rappuoli,703 rappuoli,734 rappuoli,832 start IgG_Z-score-_COVID-19_patients,379 IgM_Z-score-_COVID-19_patients,379 PhyloCSF_smooth,580 PhyloCSFpower,595 Q0_tracks,648 Q1_tracks,650 Q2_tracks,650 Q3_tracks,650 artic,161 articV4,161 articV4_1,174 augustusGene,58 bpmIggCovidSum,388 bpmIgmCovidSum,388 cas13Crispr,446 contacts,374 cpgIslandExt,33 cpgIslandExtUnmasked,36 cpgIslandSuper,33 galaxyEna,650 galaxyEnaQ0Ba-1,646 galaxyEnaQ0Ba-1-1,646 galaxyEnaQ0Ba-1-1-11,646 galaxyEnaQ0Ba-1-17,646 galaxyEnaQ0Ba-2,646 galaxyEnaQ1Ay-4,646 galaxyEnaQ1Ay-4-2,646 galaxyEnaQ1Ay-4-2-2,646 galaxyEnaQ1Ay-43,646 galaxyEnaQ1Ba-1-17,646 galaxyEnaQ2Ay-120,646 galaxyEnaQ2Ay-122,646 galaxyEnaQ2Ay-4,646 galaxyEnaQ2Ay-5,646 galaxyEnaQ2Ay-6,646 galaxyEnaQ3Ay-4,646 galaxyEnaQ3Ay-5,646 galaxyEnaQ3Ay-9,646 galaxyEnaQ3B-1-1-7,646 galaxyEnaQ3B-1-617-2,646 icshape,131 icshape,151 kimRnaMod,208 kimTranscripts,426 ncbiGeneBGP,141 ncbiProducts,157 nextstrainFreq,220 nextstrainFreq,240 pbm,388 phyloGenes,423 poranHla1,236 poranHla2,236 rapid,315 swift,244 transcriptome,432 unipCov2AliSwissprot,372 unipCov2Chain,76 unipCov2Chain,98 unipCov2Chain,602 unipCov2DisulfBond,72 unipCov2DisulfBond,94 unipCov2DisulfBond,598 unipCov2Domain,71 unipCov2Domain,93 unipCov2Domain,597 unipCov2Interest,278 unipCov2LocCytopl,71 unipCov2LocCytopl,93 unipCov2LocCytopl,597 unipCov2LocExtra,71 unipCov2LocExtra,93 unipCov2LocExtra,597 unipCov2LocSignal,72 unipCov2LocSignal,94 unipCov2LocSignal,598 unipCov2LocTransMemb,72 unipCov2LocTransMemb,94 unipCov2LocTransMemb,598 unipCov2Modif,75 unipCov2Modif,97 unipCov2Modif,601 unipCov2Mut,72 unipCov2Mut,94 unipCov2Mut,598 unipCov2Other,72 unipCov2Other,94 unipCov2Other,598 unipCov2Repeat,70 unipCov2Repeat,92 unipCov2Repeat,596 unipCov2Struct,74 unipCov2Struct,96 unipCov2Struct,600 varskip,167 start-end publicAnnots,72 started nextstrainSamples,809 starting Q0_tracks,318 Q0_tracks,1076 Q1_tracks,320 Q1_tracks,1078 Q2_tracks,320 Q2_tracks,1078 Q3_tracks,320 Q3_tracks,1078 galaxyEna,320 galaxyEna,1078 galaxyEnaQ0Ba-1,316 galaxyEnaQ0Ba-1,1074 galaxyEnaQ0Ba-1-1,316 galaxyEnaQ0Ba-1-1,1074 galaxyEnaQ0Ba-1-1-11,316 galaxyEnaQ0Ba-1-1-11,1074 galaxyEnaQ0Ba-1-17,316 galaxyEnaQ0Ba-1-17,1074 galaxyEnaQ0Ba-2,316 galaxyEnaQ0Ba-2,1074 galaxyEnaQ1Ay-4,316 galaxyEnaQ1Ay-4,1074 galaxyEnaQ1Ay-4-2,316 galaxyEnaQ1Ay-4-2,1074 galaxyEnaQ1Ay-4-2-2,316 galaxyEnaQ1Ay-4-2-2,1074 galaxyEnaQ1Ay-43,316 galaxyEnaQ1Ay-43,1074 galaxyEnaQ1Ba-1-17,316 galaxyEnaQ1Ba-1-17,1074 galaxyEnaQ2Ay-120,316 galaxyEnaQ2Ay-120,1074 galaxyEnaQ2Ay-122,316 galaxyEnaQ2Ay-122,1074 galaxyEnaQ2Ay-4,316 galaxyEnaQ2Ay-4,1074 galaxyEnaQ2Ay-5,316 galaxyEnaQ2Ay-5,1074 galaxyEnaQ2Ay-6,316 galaxyEnaQ2Ay-6,1074 galaxyEnaQ3Ay-4,316 galaxyEnaQ3Ay-4,1074 galaxyEnaQ3Ay-5,316 galaxyEnaQ3Ay-5,1074 galaxyEnaQ3Ay-9,316 galaxyEnaQ3Ay-9,1074 galaxyEnaQ3B-1-1-7,316 galaxyEnaQ3B-1-1-7,1074 galaxyEnaQ3B-1-617-2,316 galaxyEnaQ3B-1-617-2,1074 phyloGenes,257 state PhyloCSF_smooth,609 PhyloCSFpower,620 multiz7way,53 multiz7way,842 multiz7way,897 multiz7way,1241 strainCons119way,146 strainCons119way,1844 strainCons119way,1850 strainCons119way,1874 strainCons119way,2096 strainCons119way,2220 strainCons119way,2275 strainCons119way,2619 strainCons44way,94 strainCons44way,1439 strainCons44way,1445 strainCons44way,1469 strainCons44way,1691 strainCons44way,1815 strainCons44way,1870 strainCons44way,2214 states PhyloCSF_smooth,441 PhyloCSF_smooth,496 PhyloCSFpower,456 PhyloCSFpower,511 variantMuts,204 statistical PhyloCSF_smooth,225 PhyloCSFpower,13 PhyloCSFpower,240 augustusGene,47 multiz7way,1091 pond,74 strainCons119way,2469 strainCons44way,2064 statistics Q0_tracks,566 Q1_tracks,568 Q2_tracks,568 Q3_tracks,568 galaxyEna,568 galaxyEnaQ0Ba-1,564 galaxyEnaQ0Ba-1-1,564 galaxyEnaQ0Ba-1-1-11,564 galaxyEnaQ0Ba-1-17,564 galaxyEnaQ0Ba-2,564 galaxyEnaQ1Ay-4,564 galaxyEnaQ1Ay-4-2,564 galaxyEnaQ1Ay-4-2-2,564 galaxyEnaQ1Ay-43,564 galaxyEnaQ1Ba-1-17,564 galaxyEnaQ2Ay-120,564 galaxyEnaQ2Ay-122,564 galaxyEnaQ2Ay-4,564 galaxyEnaQ2Ay-5,564 galaxyEnaQ2Ay-6,564 galaxyEnaQ3Ay-4,564 galaxyEnaQ3Ay-5,564 galaxyEnaQ3Ay-9,564 galaxyEnaQ3B-1-1-7,564 galaxyEnaQ3B-1-617-2,564 stdev pbmShanghai,316 stdin cpgIslandExt,415 cpgIslandExt,420 cpgIslandExtUnmasked,418 cpgIslandExtUnmasked,423 cpgIslandSuper,415 cpgIslandSuper,420 primers,304 vaccines,277 stdout IgG_Z-score-_COVID-19_patients,383 IgM_Z-score-_COVID-19_patients,383 artic,165 articV4,165 articV4_1,178 bpmIggCovidSum,392 bpmIgmCovidSum,392 cas13Crispr,450 contacts,378 cpgIslandExt,413 cpgIslandExt,417 cpgIslandExtUnmasked,416 cpgIslandExtUnmasked,420 cpgIslandSuper,413 cpgIslandSuper,417 kimRnaMod,212 kimTranscripts,430 ncbiGeneBGP,145 ncbiProducts,161 pbm,392 phyloGenes,427 poranHla1,240 poranHla2,240 primers,292 primers,305 rapid,319 swift,248 transcriptome,436 unipCov2AliSwissprot,376 unipCov2Chain,606 unipCov2DisulfBond,602 unipCov2Domain,601 unipCov2Interest,282 unipCov2LocCytopl,601 unipCov2LocExtra,601 unipCov2LocSignal,602 unipCov2LocTransMemb,602 unipCov2Modif,605 unipCov2Mut,602 unipCov2Other,602 unipCov2Repeat,600 unipCov2Struct,604 vaccines,273 vaccines,331 varskip,171 stefanie augustusGene,267 stein Calu3_07hpi,362 ORFs,360 Vero6_05hpi,362 Vero6_24hpi,362 weizmanOrfs,368 stem rnaStructRangan,57 step multiz7way,635 multiz7way,670 rosettaMhc,15 strainCons119way,984 strainCons119way,1019 strainCons44way,932 strainCons44way,967 steps nextstrainSamples,806 stepsize primers,293 still Q0_tracks,634 Q1_tracks,636 Q2_tracks,636 Q3_tracks,636 galaxyEna,636 galaxyEnaQ0Ba-1,632 galaxyEnaQ0Ba-1-1,632 galaxyEnaQ0Ba-1-1-11,632 galaxyEnaQ0Ba-1-17,632 galaxyEnaQ0Ba-2,632 galaxyEnaQ1Ay-4,632 galaxyEnaQ1Ay-4-2,632 galaxyEnaQ1Ay-4-2-2,632 galaxyEnaQ1Ay-43,632 galaxyEnaQ1Ba-1-17,632 galaxyEnaQ2Ay-120,632 galaxyEnaQ2Ay-122,632 galaxyEnaQ2Ay-4,632 galaxyEnaQ2Ay-5,632 galaxyEnaQ2Ay-6,632 galaxyEnaQ3Ay-4,632 galaxyEnaQ3Ay-5,632 galaxyEnaQ3Ay-9,632 galaxyEnaQ3B-1-1-7,632 galaxyEnaQ3B-1-617-2,632 stimulated targets,35 stimulating rfam,32 stochastic nextstrainSamples,1067 stockham microdel,275 stop PhyloCSF_smooth,582 PhyloCSFpower,597 phyloGenes,292 stored IgG_Z-score-_COVID-19_patients,311 IgM_Z-score-_COVID-19_patients,311 artic,94 articV4,94 articV4_1,107 bpmIggCovidSum,320 bpmIgmCovidSum,320 cas13Crispr,379 contacts,307 kimRnaMod,141 kimTranscripts,358 ncbiGeneBGP,63 ncbiProducts,79 pbm,320 pbmShanghai,437 phyloGenes,355 poranHla1,168 poranHla2,168 rapid,248 resist,107 resistPred,199 swift,177 transcriptome,364 unipCov2AliSwissprot,284 unipCov2Chain,514 unipCov2DisulfBond,510 unipCov2Domain,509 unipCov2Interest,190 unipCov2LocCytopl,509 unipCov2LocExtra,509 unipCov2LocSignal,510 unipCov2LocTransMemb,510 unipCov2Modif,513 unipCov2Mut,510 unipCov2Other,510 unipCov2Repeat,508 unipCov2Struct,512 varskip,100 strain multiz7way,713 potPathoIndel,175 strainCons119way,1316 strainCons119way,1356 strainCons119way,1379 strainCons119way,1401 strainCons119way,1425 strainCons119way,1441 strainCons119way,1469 strainCons44way,1064 strainCons44way,1140 variantMuts,1405 strain_phylogenetics sarsCov2Phylo,697 strains cas13Crispr,154 multiz7way,9 potPathoIndel,167 potPathoIndel,181 rosettaMhc,137 strainCons119way,8 strainCons119way,9 strainCons119way,71 strainCons119wayViewalign,7 strainCons119wayViewalign,8 strainCons119wayViewphastcons,8 strainCons119wayViewphastcons,9 strainCons119wayViewphyloP,8 strainCons119wayViewphyloP,9 strainCons44way,8 strainCons44wayViewalign,7 strainCons44wayViewphastcons,9 strainCons44wayViewphyloP,8 strainName119way,7 strainName44way,8 strainPhastCons119way,4 strainPhastCons44way,6 strainPhyloP119way,4 strainPhyloP44way,6 strand PhyloCSF_minus_1,5 PhyloCSF_minus_2,5 PhyloCSF_minus_3,5 PhyloCSF_plus_1,6 PhyloCSF_plus_2,6 PhyloCSF_plus_3,6 PhyloCSF_smooth,337 PhyloCSF_smooth,362 PhyloCSF_smooth,398 PhyloCSF_smooth,571 PhyloCSF_smooth,604 PhyloCSF_smooth,617 PhyloCSFpower,352 PhyloCSFpower,377 PhyloCSFpower,413 PhyloCSFpower,586 PhyloCSFpower,615 PhyloCSFpower,628 cpgIslandExt,80 cpgIslandExt,84 cpgIslandExtUnmasked,83 cpgIslandExtUnmasked,87 cpgIslandSuper,80 cpgIslandSuper,84 kimTranscripts,76 transcriptome,68 strands kimTranscripts,80 rnaStructRangan,63 transcriptome,72 unipCov2Chain,224 unipCov2DisulfBond,220 unipCov2Domain,219 unipCov2LocCytopl,219 unipCov2LocExtra,219 unipCov2LocSignal,220 unipCov2LocTransMemb,220 unipCov2Modif,223 unipCov2Mut,220 unipCov2Other,220 unipCov2Repeat,218 unipCov2Struct,222 strategies sarsCov2Phylo,1063 sarsCov2PhyloPub,1183 strategy PhyloCSF_smooth,389 PhyloCSFpower,404 Q0_tracks,106 Q1_tracks,108 Q2_tracks,108 Q3_tracks,108 cas13Crispr,514 galaxyEna,108 galaxyEnaQ0Ba-1,104 galaxyEnaQ0Ba-1-1,104 galaxyEnaQ0Ba-1-1-11,104 galaxyEnaQ0Ba-1-17,104 galaxyEnaQ0Ba-2,104 galaxyEnaQ1Ay-4,104 galaxyEnaQ1Ay-4-2,104 galaxyEnaQ1Ay-4-2-2,104 galaxyEnaQ1Ay-43,104 galaxyEnaQ1Ba-1-17,104 galaxyEnaQ2Ay-120,104 galaxyEnaQ2Ay-122,104 galaxyEnaQ2Ay-4,104 galaxyEnaQ2Ay-5,104 galaxyEnaQ2Ay-6,104 galaxyEnaQ3Ay-4,104 galaxyEnaQ3Ay-5,104 galaxyEnaQ3Ay-9,104 galaxyEnaQ3B-1-1-7,104 galaxyEnaQ3B-1-617-2,104 strengths strainCons119way,249 strainCons44way,197 stringent problematicSites,385 variantMuts,939 strong bloomEscTop,2 bloomEscTop,6 epitopes,51 rosettaMhc,273 spikeMuts,189 struct icshape,3 pyle,2 structural Starr_Bloom,156 Starr_Bloom_bind,150 abEscape,247 bloomEscMabAvg,251 bloomEscMax,257 bloomEscSerumAvg,252 bloomEscTop,255 escape,254 icshape,210 mccoy,247 rappuoli,254 rosettaMhc,185 structure Entropy,13 Q0_tracks,275 Q1_tracks,277 Q2_tracks,277 Q3_tracks,277 augustusGene,113 contacts,62 contacts,73 galaxyEna,277 galaxyEnaQ0Ba-1,273 galaxyEnaQ0Ba-1-1,273 galaxyEnaQ0Ba-1-1-11,273 galaxyEnaQ0Ba-1-17,273 galaxyEnaQ0Ba-2,273 galaxyEnaQ1Ay-4,273 galaxyEnaQ1Ay-4-2,273 galaxyEnaQ1Ay-4-2-2,273 galaxyEnaQ1Ay-43,273 galaxyEnaQ1Ba-1-17,273 galaxyEnaQ2Ay-120,273 galaxyEnaQ2Ay-122,273 galaxyEnaQ2Ay-4,273 galaxyEnaQ2Ay-5,273 galaxyEnaQ2Ay-6,273 galaxyEnaQ3Ay-4,273 galaxyEnaQ3Ay-5,273 galaxyEnaQ3Ay-9,273 galaxyEnaQ3B-1-1-7,273 galaxyEnaQ3B-1-617-2,273 icshape,6 nextstrainSamples,647 pdb,93 pyle,6 pyle,31 pyle,195 pyle,214 pyle,292 pyle,325 rfam,91 rnaStructRangan,19 rnaStructRangan,52 rnaStructRangan,115 rosettaMhc,155 unipCov2AliSwissprot,493 unipCov2Chain,221 unipCov2Chain,722 unipCov2DisulfBond,217 unipCov2DisulfBond,718 unipCov2Domain,216 unipCov2Domain,717 unipCov2Interest,376 unipCov2LocCytopl,216 unipCov2LocCytopl,717 unipCov2LocExtra,216 unipCov2LocExtra,717 unipCov2LocSignal,217 unipCov2LocSignal,718 unipCov2LocTransMemb,217 unipCov2LocTransMemb,718 unipCov2Modif,220 unipCov2Modif,721 unipCov2Mut,217 unipCov2Mut,718 unipCov2Other,217 unipCov2Other,718 unipCov2Repeat,215 unipCov2Repeat,716 unipCov2Struct,1 unipCov2Struct,6 unipCov2Struct,219 unipCov2Struct,720 structured rfam,16 structures augustusGene,164 contacts,9 contacts,28 genscan,215 pdb,2 pdb,23 resistPred,69 resistPred,96 rosettaMhc,62 students rnaStructRangan,87 studies abEscape,58 bloomEscMabAvg,62 bloomEscMax,68 bloomEscSerumAvg,63 bloomEscTop,66 crisprDet,25 escape,65 mccoy,58 rappuoli,65 rosettaMhc,123 study cd8escape,135 stumpf abEscape,785 bloomEscMabAvg,789 bloomEscMax,795 bloomEscSerumAvg,790 bloomEscTop,793 escape,792 mccoy,785 rappuoli,792 style IgG_Z-score-_COVID-19_patients,184 IgM_Z-score-_COVID-19_patients,184 bpmIggCovidSum,193 bpmIgmCovidSum,193 pbm,193 su variantMuts,1210 variantMuts,1491 sub-genomic kimTranscripts,41 transcriptome,33 subcellular unipCov2Chain,362 unipCov2DisulfBond,358 unipCov2Domain,357 unipCov2LocCytopl,357 unipCov2LocExtra,357 unipCov2LocSignal,358 unipCov2LocTransMemb,358 unipCov2Modif,361 unipCov2Mut,358 unipCov2Other,358 unipCov2Repeat,356 unipCov2Struct,360 subgenomic Kim_RNAs,4 Kim_TRS_sgmRNAs,5 Kim_non-TRS_sgmRNAs,6 TRS_sites,9 kimNp,1 kimNp,3 kimRnaMod,1 kimRnaMod,4 kimTranscripts,1 kimTranscripts,3 mRNAs,7 transcriptome,1 transcriptome,4 subgenus phyloGenes,24 subject A_120Total,10 A_21Total,10 A_45Total,10 B_113Total,10 B_26Total,10 C_104Total,10 C_32Total,10 D_33Total,10 D_76Total,10 E_104Total,10 E_28Total,10 F_115Total,10 F_48Total,10 G_18Total,10 G_94Total,10 H_152Total,10 H_61Total,10 I_102Total,10 I_26Total,10 J_121Total,10 J_15Total,10 K_103Total,10 K_29Total,10 subjected cd8escape,169 submitted Q0_tracks,76 Q1_tracks,78 Q2_tracks,78 Q3_tracks,78 galaxyEna,78 galaxyEnaQ0Ba-1,74 galaxyEnaQ0Ba-1-1,74 galaxyEnaQ0Ba-1-1-11,74 galaxyEnaQ0Ba-1-17,74 galaxyEnaQ0Ba-2,74 galaxyEnaQ1Ay-4,74 galaxyEnaQ1Ay-4-2,74 galaxyEnaQ1Ay-4-2-2,74 galaxyEnaQ1Ay-43,74 galaxyEnaQ1Ba-1-17,74 galaxyEnaQ2Ay-120,74 galaxyEnaQ2Ay-122,74 galaxyEnaQ2Ay-4,74 galaxyEnaQ2Ay-5,74 galaxyEnaQ2Ay-6,74 galaxyEnaQ3Ay-4,74 galaxyEnaQ3Ay-5,74 galaxyEnaQ3Ay-9,74 galaxyEnaQ3B-1-1-7,74 galaxyEnaQ3B-1-617-2,74 microdel,195 nextstrainClade,129 nextstrainFreq,141 nextstrainGene,99 nextstrainParsimony,298 nextstrainSamples,609 rosettaMhc,397 sarsCov2PhyloPub,951 submitters nextstrainSamples,693 submitting sarsCov2PhyloPub,942 submodel augustusGene,331 subsections multiz7way,656 strainCons119way,1005 strainCons44way,953 subsequently cd8escape,154 subset nextstrainClade,118 nextstrainSamples,4 nextstrainSamples,617 nextstrainSamples,631 nextstrainSamples,672 nextstrainSamples19A,8 nextstrainSamples19B,8 nextstrainSamples20A,8 nextstrainSamples20B,8 nextstrainSamples20C,8 nextstrainSamples20D,8 nextstrainSamples20F,8 nextstrainSamples20G,8 nextstrainSamples21A_Delta,10 nextstrainSamples21B_Kappa,10 nextstrainSamples21D_Eta,10 nextstrainSamples21E_Theta,10 nextstrainSamples21F_Iota,10 nextstrainSamples21G_Lambda,10 nextstrainSamples21H_Mu,10 nextstrainSamples21I_Delta,10 nextstrainSamples21J_Delta,10 nextstrainSamplesAll,5 nextstrainSamplesRb,8 nextstrainSamplesViewAll,4 nextstrainSamplesViewNewClades,4 phyloGenes,254 strainCons119way,94 subsets nextstrainSamples,221 problematicSites,466 substitute nextstrainSamples,857 substitution PhyloCSF_smooth,63 PhyloCSFpower,78 multiz7way,1020 nextstrainParsimony,254 sarsCov2Phylo,7 sarsCov2PhyloFull,5 sarsCov2PhyloMinAf001,6 sarsCov2PhyloMinAf01,6 sarsCov2PhyloPub,7 sarsCov2PhyloPubAllFull,7 sarsCov2PhyloPubAllMinAf001,5 sarsCov2PhyloPubAllMinAf01,5 strainCons119way,1704 strainCons119way,1808 strainCons119way,1898 strainCons119way,1923 strainCons119way,2398 strainCons44way,1299 strainCons44way,1403 strainCons44way,1493 strainCons44way,1518 strainCons44way,1993 substitutions PhyloCSF_smooth,45 PhyloCSF_smooth,50 PhyloCSF_smooth,60 PhyloCSFpower,60 PhyloCSFpower,65 PhyloCSFpower,75 sarsCov2PhyloPub,509 vaccines,447 variantMuts,848 variantMuts,875 subtrack Q0_tracks,357 Q0_tracks,676 Q1_tracks,359 Q1_tracks,678 Q2_tracks,359 Q2_tracks,678 Q3_tracks,359 Q3_tracks,678 Starr_Bloom,77 Starr_Bloom,99 Starr_Bloom_bind,71 Starr_Bloom_bind,93 galaxyEna,359 galaxyEna,678 galaxyEnaQ0Ba-1,355 galaxyEnaQ0Ba-1,674 galaxyEnaQ0Ba-1-1,355 galaxyEnaQ0Ba-1-1,674 galaxyEnaQ0Ba-1-1-11,355 galaxyEnaQ0Ba-1-1-11,674 galaxyEnaQ0Ba-1-17,355 galaxyEnaQ0Ba-1-17,674 galaxyEnaQ0Ba-2,355 galaxyEnaQ0Ba-2,674 galaxyEnaQ1Ay-4,355 galaxyEnaQ1Ay-4,674 galaxyEnaQ1Ay-4-2,355 galaxyEnaQ1Ay-4-2,674 galaxyEnaQ1Ay-4-2-2,355 galaxyEnaQ1Ay-4-2-2,674 galaxyEnaQ1Ay-43,355 galaxyEnaQ1Ay-43,674 galaxyEnaQ1Ba-1-17,355 galaxyEnaQ1Ba-1-17,674 galaxyEnaQ2Ay-120,355 galaxyEnaQ2Ay-120,674 galaxyEnaQ2Ay-122,355 galaxyEnaQ2Ay-122,674 galaxyEnaQ2Ay-4,355 galaxyEnaQ2Ay-4,674 galaxyEnaQ2Ay-5,355 galaxyEnaQ2Ay-5,674 galaxyEnaQ2Ay-6,355 galaxyEnaQ2Ay-6,674 galaxyEnaQ3Ay-4,355 galaxyEnaQ3Ay-4,674 galaxyEnaQ3Ay-5,355 galaxyEnaQ3Ay-5,674 galaxyEnaQ3Ay-9,355 galaxyEnaQ3Ay-9,674 galaxyEnaQ3B-1-1-7,355 galaxyEnaQ3B-1-1-7,674 galaxyEnaQ3B-1-617-2,355 galaxyEnaQ3B-1-617-2,674 nextstrainSamples,233 subtracks Q0_tracks,288 Q1_tracks,290 Q2_tracks,290 Q3_tracks,290 abEscape,17 abEscape,382 abEscape,411 bloomEscMabAvg,21 bloomEscMabAvg,386 bloomEscMabAvg,415 bloomEscMax,27 bloomEscMax,392 bloomEscMax,421 bloomEscSerumAvg,22 bloomEscSerumAvg,387 bloomEscSerumAvg,416 bloomEscTop,25 bloomEscTop,390 bloomEscTop,419 escape,24 escape,389 escape,418 galaxyEna,290 galaxyEnaQ0Ba-1,286 galaxyEnaQ0Ba-1-1,286 galaxyEnaQ0Ba-1-1-11,286 galaxyEnaQ0Ba-1-17,286 galaxyEnaQ0Ba-2,286 galaxyEnaQ1Ay-4,286 galaxyEnaQ1Ay-4-2,286 galaxyEnaQ1Ay-4-2-2,286 galaxyEnaQ1Ay-43,286 galaxyEnaQ1Ba-1-17,286 galaxyEnaQ2Ay-120,286 galaxyEnaQ2Ay-122,286 galaxyEnaQ2Ay-4,286 galaxyEnaQ2Ay-5,286 galaxyEnaQ2Ay-6,286 galaxyEnaQ3Ay-4,286 galaxyEnaQ3Ay-5,286 galaxyEnaQ3Ay-9,286 galaxyEnaQ3B-1-1-7,286 galaxyEnaQ3B-1-617-2,286 kimNp,63 kimTranscripts,130 mccoy,17 mccoy,382 mccoy,411 nextstrainSamples,217 nextstrainSamples,556 pond,95 problematicSites,122 rappuoli,24 rappuoli,389 rappuoli,418 sarsCov2Phylo,59 sarsCov2Phylo,779 sarsCov2PhyloPub,73 transcriptome,122 unipCov2Chain,331 unipCov2Chain,357 unipCov2DisulfBond,327 unipCov2DisulfBond,353 unipCov2Domain,326 unipCov2Domain,352 unipCov2LocCytopl,326 unipCov2LocCytopl,352 unipCov2LocExtra,326 unipCov2LocExtra,352 unipCov2LocSignal,327 unipCov2LocSignal,353 unipCov2LocTransMemb,327 unipCov2LocTransMemb,353 unipCov2Modif,330 unipCov2Modif,356 unipCov2Mut,327 unipCov2Mut,353 unipCov2Other,327 unipCov2Other,353 unipCov2Repeat,325 unipCov2Repeat,351 unipCov2Struct,329 unipCov2Struct,355 subtree strainCons119way,2027 strainCons119way,2032 strainCons44way,1622 strainCons44way,1627 such PhyloCSF_smooth,37 PhyloCSFpower,52 Q0_tracks,421 Q1_tracks,423 Q2_tracks,423 Q3_tracks,423 cpgIslandExt,65 cpgIslandExtUnmasked,68 cpgIslandSuper,65 galaxyEna,423 galaxyEnaQ0Ba-1,419 galaxyEnaQ0Ba-1-1,419 galaxyEnaQ0Ba-1-1-11,419 galaxyEnaQ0Ba-1-17,419 galaxyEnaQ0Ba-2,419 galaxyEnaQ1Ay-4,419 galaxyEnaQ1Ay-4-2,419 galaxyEnaQ1Ay-4-2-2,419 galaxyEnaQ1Ay-43,419 galaxyEnaQ1Ba-1-17,419 galaxyEnaQ2Ay-120,419 galaxyEnaQ2Ay-122,419 galaxyEnaQ2Ay-4,419 galaxyEnaQ2Ay-5,419 galaxyEnaQ2Ay-6,419 galaxyEnaQ3Ay-4,419 galaxyEnaQ3Ay-5,419 galaxyEnaQ3Ay-9,419 galaxyEnaQ3B-1-1-7,419 galaxyEnaQ3B-1-617-2,419 nextstrainFreq,326 nextstrainSamples,765 potPathoIndel,193 sufficient PhyloCSF_smooth,250 PhyloCSFpower,265 Q0_tracks,70 Q1_tracks,72 Q2_tracks,72 Q3_tracks,72 galaxyEna,72 galaxyEnaQ0Ba-1,68 galaxyEnaQ0Ba-1-1,68 galaxyEnaQ0Ba-1-1-11,68 galaxyEnaQ0Ba-1-17,68 galaxyEnaQ0Ba-2,68 galaxyEnaQ1Ay-4,68 galaxyEnaQ1Ay-4-2,68 galaxyEnaQ1Ay-4-2-2,68 galaxyEnaQ1Ay-43,68 galaxyEnaQ1Ba-1-17,68 galaxyEnaQ2Ay-120,68 galaxyEnaQ2Ay-122,68 galaxyEnaQ2Ay-4,68 galaxyEnaQ2Ay-5,68 galaxyEnaQ2Ay-6,68 galaxyEnaQ3Ay-4,68 galaxyEnaQ3Ay-5,68 galaxyEnaQ3Ay-9,68 galaxyEnaQ3B-1-1-7,68 galaxyEnaQ3B-1-617-2,68 multiz7way,371 sarsCov2Phylo,748 strainCons119way,713 strainCons44way,661 sufficiently nextstrainSamples,496 suggests transcriptome,207 suitable varskip,48 suite Calu3_07hpi,92 ORFs,90 Vero6_05hpi,92 Vero6_24hpi,92 variantMuts,902 weizmanOrfs,98 sum IgG_Z-score-_COVID-19_patients,193 IgM_Z-score-_COVID-19_patients,193 abEscape,439 bloomEscMabAvg,443 bloomEscMax,449 bloomEscSerumAvg,444 bloomEscTop,447 bpmIggCovidSum,4 bpmIggCovidSum,17 bpmIggCovidSum,202 bpmIgmCovidSum,4 bpmIgmCovidSum,17 bpmIgmCovidSum,202 escape,446 mccoy,439 pbm,202 rappuoli,446 summaries addgene,54 summarized abEscape,374 abEscape,449 bloomEscMabAvg,378 bloomEscMabAvg,453 bloomEscMax,384 bloomEscMax,459 bloomEscSerumAvg,379 bloomEscSerumAvg,454 bloomEscTop,382 bloomEscTop,457 escape,381 escape,456 mccoy,374 mccoy,449 rappuoli,381 rappuoli,456 summary IgG_Z-score-_COVID-19_patients,187 IgM_Z-score-_COVID-19_patients,187 abEscape,240 abEscape,470 bloomEscMabAvg,244 bloomEscMabAvg,474 bloomEscMax,250 bloomEscMax,480 bloomEscSerumAvg,245 bloomEscSerumAvg,475 bloomEscTop,248 bloomEscTop,478 bpmIggCovidSum,196 bpmIgmCovidSum,196 epitopes,139 escape,247 escape,477 mccoy,240 mccoy,470 pbm,196 rappuoli,247 rappuoli,477 summed pbmShanghai,342 sun icshape,182 microdel,286 super Calu3_07hpi,37 ORFs,35 Vero6_05hpi,37 Vero6_24hpi,37 weizmanOrfs,43 supercomputing Q0_tracks,247 Q1_tracks,249 Q2_tracks,249 Q3_tracks,249 galaxyEna,249 galaxyEnaQ0Ba-1,245 galaxyEnaQ0Ba-1-1,245 galaxyEnaQ0Ba-1-1-11,245 galaxyEnaQ0Ba-1-17,245 galaxyEnaQ0Ba-2,245 galaxyEnaQ1Ay-4,245 galaxyEnaQ1Ay-4-2,245 galaxyEnaQ1Ay-4-2-2,245 galaxyEnaQ1Ay-43,245 galaxyEnaQ1Ba-1-17,245 galaxyEnaQ2Ay-120,245 galaxyEnaQ2Ay-122,245 galaxyEnaQ2Ay-4,245 galaxyEnaQ2Ay-5,245 galaxyEnaQ2Ay-6,245 galaxyEnaQ3Ay-4,245 galaxyEnaQ3Ay-5,245 galaxyEnaQ3Ay-9,245 galaxyEnaQ3B-1-1-7,245 galaxyEnaQ3B-1-617-2,245 superfold Entropy,12 pyle,166 supertrack Q0_tracks,285 Q1_tracks,287 Q2_tracks,287 Q3_tracks,287 galaxyEna,287 galaxyEnaQ0Ba-1,283 galaxyEnaQ0Ba-1-1,283 galaxyEnaQ0Ba-1-1-11,283 galaxyEnaQ0Ba-1-17,283 galaxyEnaQ0Ba-2,283 galaxyEnaQ1Ay-4,283 galaxyEnaQ1Ay-4-2,283 galaxyEnaQ1Ay-4-2-2,283 galaxyEnaQ1Ay-43,283 galaxyEnaQ1Ba-1-17,283 galaxyEnaQ2Ay-120,283 galaxyEnaQ2Ay-122,283 galaxyEnaQ2Ay-4,283 galaxyEnaQ2Ay-5,283 galaxyEnaQ2Ay-6,283 galaxyEnaQ3Ay-4,283 galaxyEnaQ3Ay-5,283 galaxyEnaQ3Ay-9,283 galaxyEnaQ3B-1-1-7,283 galaxyEnaQ3B-1-617-2,283 suppl augustusGene,336 sarsCov2Phylo,1170 sarsCov2PhyloPub,1303 supplemental IgG_Z-score-_COVID-19_patients,205 IgM_Z-score-_COVID-19_patients,205 bpmIggCovidSum,214 bpmIgmCovidSum,214 multiz7way,974 pbm,214 pbmShanghai,357 rapid,214 strainCons119way,2352 strainCons44way,1947 supplementary gordon2,180 rosettaMhc,327 supplemented spikeMuts,109 supplied vaccines,210 support Q0_tracks,1146 Q1_tracks,1148 Q2_tracks,1148 Q3_tracks,1148 galaxyEna,1148 galaxyEnaQ0Ba-1,1144 galaxyEnaQ0Ba-1-1,1144 galaxyEnaQ0Ba-1-1-11,1144 galaxyEnaQ0Ba-1-17,1144 galaxyEnaQ0Ba-2,1144 galaxyEnaQ1Ay-4,1144 galaxyEnaQ1Ay-4-2,1144 galaxyEnaQ1Ay-4-2-2,1144 galaxyEnaQ1Ay-43,1144 galaxyEnaQ1Ba-1-17,1144 galaxyEnaQ2Ay-120,1144 galaxyEnaQ2Ay-122,1144 galaxyEnaQ2Ay-4,1144 galaxyEnaQ2Ay-5,1144 galaxyEnaQ2Ay-6,1144 galaxyEnaQ3Ay-4,1144 galaxyEnaQ3Ay-5,1144 galaxyEnaQ3Ay-9,1144 galaxyEnaQ3B-1-1-7,1144 galaxyEnaQ3B-1-617-2,1144 kimTranscripts,184 kimTranscripts,230 targets,56 transcriptome,154 supported gap,92 supporting Calu3_07hpi,50 ORFs,48 Vero6_05hpi,50 Vero6_24hpi,50 weizmanOrfs,56 supports strainCons119way,1984 strainCons44way,1579 surface abEscape,85 bloomEscMabAvg,89 bloomEscMax,95 bloomEscSerumAvg,90 bloomEscTop,93 cd8escape,41 escape,92 mccoy,85 rappuoli,92 rosettaMhc,157 surveill sarsCov2Phylo,1012 sarsCov2PhyloPub,1132 surveillance Q0_tracks,65 Q0_tracks,661 Q0_tracks,1187 Q1_tracks,67 Q1_tracks,663 Q1_tracks,1189 Q2_tracks,67 Q2_tracks,663 Q2_tracks,1189 Q3_tracks,67 Q3_tracks,663 Q3_tracks,1189 galaxyEna,5 galaxyEna,67 galaxyEna,663 galaxyEna,1189 galaxyEnaQ0Ba-1,63 galaxyEnaQ0Ba-1,659 galaxyEnaQ0Ba-1,1185 galaxyEnaQ0Ba-1-1,63 galaxyEnaQ0Ba-1-1,659 galaxyEnaQ0Ba-1-1,1185 galaxyEnaQ0Ba-1-1-11,63 galaxyEnaQ0Ba-1-1-11,659 galaxyEnaQ0Ba-1-1-11,1185 galaxyEnaQ0Ba-1-17,63 galaxyEnaQ0Ba-1-17,659 galaxyEnaQ0Ba-1-17,1185 galaxyEnaQ0Ba-2,63 galaxyEnaQ0Ba-2,659 galaxyEnaQ0Ba-2,1185 galaxyEnaQ1Ay-4,63 galaxyEnaQ1Ay-4,659 galaxyEnaQ1Ay-4,1185 galaxyEnaQ1Ay-4-2,63 galaxyEnaQ1Ay-4-2,659 galaxyEnaQ1Ay-4-2,1185 galaxyEnaQ1Ay-4-2-2,63 galaxyEnaQ1Ay-4-2-2,659 galaxyEnaQ1Ay-4-2-2,1185 galaxyEnaQ1Ay-43,63 galaxyEnaQ1Ay-43,659 galaxyEnaQ1Ay-43,1185 galaxyEnaQ1Ba-1-17,63 galaxyEnaQ1Ba-1-17,659 galaxyEnaQ1Ba-1-17,1185 galaxyEnaQ2Ay-120,63 galaxyEnaQ2Ay-120,659 galaxyEnaQ2Ay-120,1185 galaxyEnaQ2Ay-122,63 galaxyEnaQ2Ay-122,659 galaxyEnaQ2Ay-122,1185 galaxyEnaQ2Ay-4,63 galaxyEnaQ2Ay-4,659 galaxyEnaQ2Ay-4,1185 galaxyEnaQ2Ay-5,63 galaxyEnaQ2Ay-5,659 galaxyEnaQ2Ay-5,1185 galaxyEnaQ2Ay-6,63 galaxyEnaQ2Ay-6,659 galaxyEnaQ2Ay-6,1185 galaxyEnaQ3Ay-4,63 galaxyEnaQ3Ay-4,659 galaxyEnaQ3Ay-4,1185 galaxyEnaQ3Ay-5,63 galaxyEnaQ3Ay-5,659 galaxyEnaQ3Ay-5,1185 galaxyEnaQ3Ay-9,63 galaxyEnaQ3Ay-9,659 galaxyEnaQ3Ay-9,1185 galaxyEnaQ3B-1-1-7,63 galaxyEnaQ3B-1-1-7,659 galaxyEnaQ3B-1-1-7,1185 galaxyEnaQ3B-1-617-2,63 galaxyEnaQ3B-1-617-2,659 galaxyEnaQ3B-1-617-2,1185 multiz7way,954 strainCons119way,2332 strainCons44way,1927 susceptible problematicSites,58 suspected variantMuts,120 sw1 strainCons119way,1306 swe strainCons119way,1267 swift swift,1 swift,3 swift,18 swift,135 swift,145 swift.bb swift,241 swiss-prot unipCov2AliSwissprot,481 unipCov2Chain,710 unipCov2DisulfBond,706 unipCov2Domain,705 unipCov2Interest,364 unipCov2LocCytopl,705 unipCov2LocExtra,705 unipCov2LocSignal,706 unipCov2LocTransMemb,706 unipCov2Modif,709 unipCov2Mut,706 unipCov2Other,706 unipCov2Repeat,704 unipCov2Struct,708 swissprot unipCov2AliSwissprot,7 unipCov2AliSwissprot,24 unipCov2AliSwissprot,70 unipCov2AliSwissprot,80 unipCov2AliSwissprot,121 unipCov2Chain,23 unipCov2Chain,40 unipCov2Chain,63 unipCov2Chain,67 unipCov2Chain,265 unipCov2Chain,306 unipCov2DisulfBond,19 unipCov2DisulfBond,36 unipCov2DisulfBond,59 unipCov2DisulfBond,63 unipCov2DisulfBond,261 unipCov2DisulfBond,302 unipCov2Domain,18 unipCov2Domain,35 unipCov2Domain,58 unipCov2Domain,62 unipCov2Domain,260 unipCov2Domain,301 unipCov2Interest,25 unipCov2Interest,42 unipCov2Interest,52 unipCov2LocCytopl,18 unipCov2LocCytopl,35 unipCov2LocCytopl,58 unipCov2LocCytopl,62 unipCov2LocCytopl,260 unipCov2LocCytopl,301 unipCov2LocExtra,18 unipCov2LocExtra,35 unipCov2LocExtra,58 unipCov2LocExtra,62 unipCov2LocExtra,260 unipCov2LocExtra,301 unipCov2LocSignal,19 unipCov2LocSignal,36 unipCov2LocSignal,59 unipCov2LocSignal,63 unipCov2LocSignal,261 unipCov2LocSignal,302 unipCov2LocTransMemb,19 unipCov2LocTransMemb,36 unipCov2LocTransMemb,59 unipCov2LocTransMemb,63 unipCov2LocTransMemb,261 unipCov2LocTransMemb,302 unipCov2Modif,22 unipCov2Modif,39 unipCov2Modif,62 unipCov2Modif,66 unipCov2Modif,264 unipCov2Modif,305 unipCov2Mut,19 unipCov2Mut,36 unipCov2Mut,59 unipCov2Mut,63 unipCov2Mut,261 unipCov2Mut,302 unipCov2Other,19 unipCov2Other,36 unipCov2Other,59 unipCov2Other,63 unipCov2Other,261 unipCov2Other,302 unipCov2Repeat,17 unipCov2Repeat,34 unipCov2Repeat,57 unipCov2Repeat,61 unipCov2Repeat,259 unipCov2Repeat,300 unipCov2Struct,21 unipCov2Struct,38 unipCov2Struct,61 unipCov2Struct,65 unipCov2Struct,263 unipCov2Struct,304 switch potPathoIndel,94 switched publicAnnots,44 switzerland spikeMuts,370 spikeMuts,407 symbols multiz7way,344 strainCons119way,686 strainCons44way,634 symm contacts,197 symmetry contacts,178 contacts,215 contacts,228 symp multiz7way,1224 strainCons119way,2602 strainCons44way,2197 syn strainName119way,11 strainName44way,16 syndrome multiz7way,708 potPathoIndel,42 strainCons119way,1336 swift,73 syndrome-related variantMuts,1381 synonymous PhyloCSF_smooth,43 PhyloCSFpower,58 phyloGenes,537 pond,133 vaccines,583 syntenically augustusGene,297 synthesis kimTranscripts,77 kimTranscripts,88 transcriptome,69 transcriptome,80 synthesized cpgIslandExt,78 cpgIslandExtUnmasked,81 cpgIslandSuper,78 pbmShanghai,88 vaccines,79 system Q0_tracks,979 Q1_tracks,981 Q2_tracks,981 Q3_tracks,981 Starr_Bloom,50 Starr_Bloom_bind,47 abEscape,87 bloomEscMabAvg,91 bloomEscMax,97 bloomEscSerumAvg,92 bloomEscTop,95 escape,94 galaxyEna,981 galaxyEnaQ0Ba-1,977 galaxyEnaQ0Ba-1-1,977 galaxyEnaQ0Ba-1-1-11,977 galaxyEnaQ0Ba-1-17,977 galaxyEnaQ0Ba-2,977 galaxyEnaQ1Ay-4,977 galaxyEnaQ1Ay-4-2,977 galaxyEnaQ1Ay-4-2-2,977 galaxyEnaQ1Ay-43,977 galaxyEnaQ1Ba-1-17,977 galaxyEnaQ2Ay-120,977 galaxyEnaQ2Ay-122,977 galaxyEnaQ2Ay-4,977 galaxyEnaQ2Ay-5,977 galaxyEnaQ2Ay-6,977 galaxyEnaQ3Ay-4,977 galaxyEnaQ3Ay-5,977 galaxyEnaQ3Ay-9,977 galaxyEnaQ3B-1-1-7,977 galaxyEnaQ3B-1-617-2,977 mccoy,87 ncbiGeneBGP,103 ncbiProducts,119 rappuoli,94 unipCov2AliSwissprot,335 unipCov2Chain,565 unipCov2DisulfBond,561 unipCov2Domain,560 unipCov2Interest,241 unipCov2LocCytopl,560 unipCov2LocExtra,560 unipCov2LocSignal,561 unipCov2LocTransMemb,561 unipCov2Modif,564 unipCov2Mut,561 unipCov2Other,561 unipCov2Repeat,559 unipCov2Struct,563 vaccines,425 systematic nextstrainParsimony,237 t PhyloCSF_smooth,737 PhyloCSFpower,703 abEscape,697 bloomEscMabAvg,701 bloomEscMax,707 bloomEscSerumAvg,702 bloomEscTop,705 cd8escape,19 cd8escape,83 cd8escape,220 cpgIslandExt,437 cpgIslandExt,439 cpgIslandExt,441 cpgIslandExt,444 cpgIslandExt,446 cpgIslandExt,448 cpgIslandExt,450 cpgIslandExt,452 cpgIslandExt,454 cpgIslandExtUnmasked,440 cpgIslandExtUnmasked,442 cpgIslandExtUnmasked,444 cpgIslandExtUnmasked,447 cpgIslandExtUnmasked,449 cpgIslandExtUnmasked,451 cpgIslandExtUnmasked,453 cpgIslandExtUnmasked,455 cpgIslandExtUnmasked,457 cpgIslandSuper,437 cpgIslandSuper,439 cpgIslandSuper,441 cpgIslandSuper,444 cpgIslandSuper,446 cpgIslandSuper,448 cpgIslandSuper,450 cpgIslandSuper,452 cpgIslandSuper,454 epitopes,273 escape,704 mccoy,697 microdel,254 multiz7way,609 multiz7way,625 nextstrainClade,257 nextstrainFreq,392 nextstrainGene,206 nextstrainParsimony,459 nextstrainSamples,1012 pond,129 poranHla1,18 poranHla1,280 poranHla2,18 poranHla2,280 rappuoli,704 rosettaMhc,36 rosettaMhc,126 sarsCov2Phylo,977 sarsCov2PhyloPub,1097 strainCons119way,959 strainCons119way,975 strainCons44way,907 strainCons44way,923 targets,25 targets,86 targets,238 treangen,243 vaccines,239 vaccines,260 variantMuts,1292 variantMuts,1294 t-cell M1_library,4 M2_library,4 cd4Epitopes,2 cd4Epitopes,4 cd8Epitopes,2 cd8Epitopes,4 cd8escape,4 cd8escape,121 targets,3 t-cells epitopes,24 epitopes,27 epitopes,93 t-react targets,1 t22918g variantMuts,758 t_bind_avg T_bind_avg,1 t_expr_avg T_expr_avg_Expression,1 taatttctactaagtgtagataattacttgggtgtgaccct crisprDet,84 tab gordon2,176 vaccines,343 tabatabaei microdel,277 table Calu3_07hpi,316 IgG_Z-score-_COVID-19_patients,292 IgM_Z-score-_COVID-19_patients,292 ORFs,314 PhyloCSF_smooth,635 Starr_Bloom,170 Starr_Bloom,208 Starr_Bloom_bind,164 Starr_Bloom_bind,202 Vero6_05hpi,316 Vero6_24hpi,316 abEscape,585 abEscape,622 abEscape,660 artic,75 articV4,75 articV4_1,88 augustusGene,225 bloomEscMabAvg,589 bloomEscMabAvg,626 bloomEscMabAvg,664 bloomEscMax,595 bloomEscMax,632 bloomEscMax,670 bloomEscSerumAvg,590 bloomEscSerumAvg,627 bloomEscSerumAvg,665 bloomEscTop,593 bloomEscTop,630 bloomEscTop,668 bpmIggCovidSum,301 bpmIgmCovidSum,301 cas13Crispr,360 contacts,237 contacts,288 cpgIslandExt,521 cpgIslandExtUnmasked,524 cpgIslandSuper,521 escape,592 escape,629 escape,667 gordon2,181 gordon2,188 gordon2,237 icshape,105 kimRnaMod,122 kimTranscripts,244 kimTranscripts,285 kimTranscripts,313 kimTranscripts,339 mccoy,585 mccoy,622 mccoy,660 microdel,148 microdel,205 multiz7way,72 ncbiGeneBGP,50 ncbiProducts,66 nextstrainClade,201 nextstrainFreq,194 nextstrainGene,151 nextstrainParsimony,363 pbm,301 pbmShanghai,418 phyloGenes,336 poranHla1,149 poranHla2,149 primers,338 problematicSites,521 rapid,229 rappuoli,592 rappuoli,629 rappuoli,667 recomb,295 resist,94 resistPred,186 rosettaMhc,328 sarsCov2Phylo,726 sarsCov2PhyloPub,876 spikeMuts,304 swift,158 targets,171 targets,181 transcriptome,345 unipCov2AliSwissprot,239 unipCov2AliSwissprot,271 unipCov2Chain,501 unipCov2DisulfBond,497 unipCov2Domain,496 unipCov2Interest,177 unipCov2LocCytopl,496 unipCov2LocExtra,496 unipCov2LocSignal,497 unipCov2LocTransMemb,497 unipCov2Modif,500 unipCov2Mut,497 unipCov2Other,497 unipCov2Repeat,495 unipCov2Struct,499 variantMuts,246 variantMuts,997 varskip,81 weizmanOrfs,322 windowmaskerSdust,85 tables cpgIslandExt,511 cpgIslandExt,529 cpgIslandExtUnmasked,514 cpgIslandExtUnmasked,532 cpgIslandSuper,511 cpgIslandSuper,529 multiz7way,780 resistPred,171 spikeMuts,166 strainCons119way,1652 strainCons44way,1247 tagged gordon2,39 tail vaccines,321 taiwan strainCons119way,1121 taking PhyloCSF_smooth,577 PhyloCSFpower,592 strainCons119way,2135 strainCons44way,1730 tall nextstrainSamples,577 tamir Calu3_07hpi,358 ORFs,356 Vero6_05hpi,358 Vero6_24hpi,358 weizmanOrfs,364 tandem simpleRepeat,4 simpleRepeat,16 simpleRepeat,23 simpleRepeat,76 tao igg,11 igm,11 pbmShanghai,20 target cas13Crispr,32 cas13Crispr,97 cas13Crispr,314 crisprDet,82 icshape,221 primers,177 resistPred,37 spikeMuts,29 strainCons119way,298 strainCons44way,246 swift,46 target-coverage strainCons119way,1975 strainCons44way,1570 targeted cas13Crispr,155 cas13Crispr,184 targets cas13Crispr,5 epitopes,71 epitopes,143 epitopes,204 epitopes,296 epitopes,331 gordon2,32 gordon2,264 poranHla1,277 poranHla2,277 tavares pyle,61 pyle,283 pyle,312 tawk vaccines,311 taylor Q0_tracks,1265 Q1_tracks,1267 Q2_tracks,1267 Q3_tracks,1267 galaxyEna,1267 galaxyEnaQ0Ba-1,1263 galaxyEnaQ0Ba-1-1,1263 galaxyEnaQ0Ba-1-1-11,1263 galaxyEnaQ0Ba-1-17,1263 galaxyEnaQ0Ba-2,1263 galaxyEnaQ1Ay-4,1263 galaxyEnaQ1Ay-4-2,1263 galaxyEnaQ1Ay-4-2-2,1263 galaxyEnaQ1Ay-43,1263 galaxyEnaQ1Ba-1-17,1263 galaxyEnaQ2Ay-120,1263 galaxyEnaQ2Ay-122,1263 galaxyEnaQ2Ay-4,1263 galaxyEnaQ2Ay-5,1263 galaxyEnaQ2Ay-6,1263 galaxyEnaQ3Ay-4,1263 galaxyEnaQ3Ay-5,1263 galaxyEnaQ3Ay-9,1263 galaxyEnaQ3B-1-1-7,1263 galaxyEnaQ3B-1-617-2,1263 tblastn contacts,104 contacts,135 targets,185 te IgG_Z-score-_COVID-19_patients,410 IgM_Z-score-_COVID-19_patients,410 bpmIggCovidSum,419 bpmIgmCovidSum,419 pbm,419 team microdel,251 resist,148 resistPred,240 rfam,154 teams Q0_tracks,1127 Q1_tracks,1129 Q2_tracks,1129 Q3_tracks,1129 galaxyEna,1129 galaxyEnaQ0Ba-1,1125 galaxyEnaQ0Ba-1-1,1125 galaxyEnaQ0Ba-1-1-11,1125 galaxyEnaQ0Ba-1-17,1125 galaxyEnaQ0Ba-2,1125 galaxyEnaQ1Ay-4,1125 galaxyEnaQ1Ay-4-2,1125 galaxyEnaQ1Ay-4-2-2,1125 galaxyEnaQ1Ay-43,1125 galaxyEnaQ1Ba-1-17,1125 galaxyEnaQ2Ay-120,1125 galaxyEnaQ2Ay-122,1125 galaxyEnaQ2Ay-4,1125 galaxyEnaQ2Ay-5,1125 galaxyEnaQ2Ay-6,1125 galaxyEnaQ3Ay-4,1125 galaxyEnaQ3Ay-5,1125 galaxyEnaQ3Ay-9,1125 galaxyEnaQ3B-1-1-7,1125 galaxyEnaQ3B-1-617-2,1125 technical icshape,56 techniques pond,75 potPathoIndel,144 technology swift,32 tegally variantMuts,1365 temperature augustusGene,141 template-switching microdel,298 templates kimTranscripts,85 transcriptome,77 temporal sarsCov2Phylo,997 sarsCov2PhyloPub,1117 ten abEscape,121 bloomEscMabAvg,125 bloomEscMax,131 bloomEscSerumAvg,126 bloomEscTop,129 escape,128 mccoy,121 rappuoli,128 tend cpgIslandExt,68 cpgIslandExt,102 cpgIslandExtUnmasked,71 cpgIslandExtUnmasked,105 cpgIslandSuper,68 cpgIslandSuper,102 vaccines,283 tendency strainCons119way,1902 strainCons44way,1497 tends kimIvtCov,135 teng IgG_Z-score-_COVID-19_patients,415 IgM_Z-score-_COVID-19_patients,415 bpmIggCovidSum,424 bpmIgmCovidSum,424 pbm,424 tepitool epitopes,38 termed recomb,214 terminal transcriptome,312 terms epitopes,246 nextstrainSamples,679 problematicSites,173 test strainCons119way,2046 strainCons44way,1641 tested abEscape,217 bloomEscMabAvg,221 bloomEscMax,227 bloomEscSerumAvg,222 bloomEscTop,225 escape,224 mccoy,217 rappuoli,224 testing resistPred,252 text IgG_Z-score-_COVID-19_patients,279 IgG_Z-score-_COVID-19_patients,332 IgM_Z-score-_COVID-19_patients,279 IgM_Z-score-_COVID-19_patients,332 abEscape,648 artic,115 articV4,115 articV4_1,128 bloomEscMabAvg,652 bloomEscMax,658 bloomEscSerumAvg,653 bloomEscTop,656 bpmIggCovidSum,288 bpmIggCovidSum,341 bpmIgmCovidSum,288 bpmIgmCovidSum,341 cas13Crispr,400 contacts,328 escape,655 kimRnaMod,162 kimTranscripts,379 mccoy,648 multiz7way,289 ncbiGeneBGP,82 ncbiProducts,98 pbm,288 pbm,341 pbmShanghai,405 pbmShanghai,458 phyloGenes,376 poranHla1,189 poranHla2,189 rapid,269 rappuoli,655 strainCons119way,428 strainCons44way,376 swift,198 transcriptome,385 unipCov2AliSwissprot,314 unipCov2Chain,544 unipCov2DisulfBond,540 unipCov2Domain,539 unipCov2Interest,220 unipCov2LocCytopl,539 unipCov2LocExtra,539 unipCov2LocSignal,540 unipCov2LocTransMemb,540 unipCov2Modif,543 unipCov2Mut,540 unipCov2Other,540 unipCov2Repeat,538 unipCov2Struct,542 varskip,121 texture strainCons119way,240 strainCons44way,188 tg13 strainCons119way,1285 thailand primers,145 than PhyloCSF_smooth,69 PhyloCSF_smooth,153 PhyloCSF_smooth,174 PhyloCSF_smooth,236 PhyloCSF_smooth,266 PhyloCSF_smooth,271 PhyloCSF_smooth,290 PhyloCSFpower,84 PhyloCSFpower,168 PhyloCSFpower,189 PhyloCSFpower,251 PhyloCSFpower,281 PhyloCSFpower,286 PhyloCSFpower,305 Q0_tracks,646 Q0_tracks,666 Q1_tracks,648 Q1_tracks,668 Q2_tracks,648 Q2_tracks,668 Q3_tracks,648 Q3_tracks,668 contacts,113 cpgIslandExt,159 cpgIslandExt,270 cpgIslandExt,275 cpgIslandExtUnmasked,162 cpgIslandExtUnmasked,273 cpgIslandExtUnmasked,278 cpgIslandSuper,159 cpgIslandSuper,270 cpgIslandSuper,275 galaxyEna,648 galaxyEna,668 galaxyEnaQ0Ba-1,644 galaxyEnaQ0Ba-1,664 galaxyEnaQ0Ba-1-1,644 galaxyEnaQ0Ba-1-1,664 galaxyEnaQ0Ba-1-1-11,644 galaxyEnaQ0Ba-1-1-11,664 galaxyEnaQ0Ba-1-17,644 galaxyEnaQ0Ba-1-17,664 galaxyEnaQ0Ba-2,644 galaxyEnaQ0Ba-2,664 galaxyEnaQ1Ay-4,644 galaxyEnaQ1Ay-4,664 galaxyEnaQ1Ay-4-2,644 galaxyEnaQ1Ay-4-2,664 galaxyEnaQ1Ay-4-2-2,644 galaxyEnaQ1Ay-4-2-2,664 galaxyEnaQ1Ay-43,644 galaxyEnaQ1Ay-43,664 galaxyEnaQ1Ba-1-17,644 galaxyEnaQ1Ba-1-17,664 galaxyEnaQ2Ay-120,644 galaxyEnaQ2Ay-120,664 galaxyEnaQ2Ay-122,644 galaxyEnaQ2Ay-122,664 galaxyEnaQ2Ay-4,644 galaxyEnaQ2Ay-4,664 galaxyEnaQ2Ay-5,644 galaxyEnaQ2Ay-5,664 galaxyEnaQ2Ay-6,644 galaxyEnaQ2Ay-6,664 galaxyEnaQ3Ay-4,644 galaxyEnaQ3Ay-4,664 galaxyEnaQ3Ay-5,644 galaxyEnaQ3Ay-5,664 galaxyEnaQ3Ay-9,644 galaxyEnaQ3Ay-9,664 galaxyEnaQ3B-1-1-7,644 galaxyEnaQ3B-1-1-7,664 galaxyEnaQ3B-1-617-2,644 galaxyEnaQ3B-1-617-2,664 kimTranscripts,215 nextstrainSamples,257 nextstrainSamples,266 pond,135 problematicSites,386 publicAnnots,101 spikeMuts,61 strainCons119way,234 strainCons119way,311 strainCons119way,321 strainCons119way,2024 strainCons44way,182 strainCons44way,259 strainCons44way,269 strainCons44way,1619 treangen,226 vaccines,183 variantMuts,62 varskip,49 thank Q0_tracks,1212 Q1_tracks,1214 Q2_tracks,1214 Q3_tracks,1214 galaxyEna,1214 galaxyEnaQ0Ba-1,1210 galaxyEnaQ0Ba-1-1,1210 galaxyEnaQ0Ba-1-1-11,1210 galaxyEnaQ0Ba-1-17,1210 galaxyEnaQ0Ba-2,1210 galaxyEnaQ1Ay-4,1210 galaxyEnaQ1Ay-4-2,1210 galaxyEnaQ1Ay-4-2-2,1210 galaxyEnaQ1Ay-43,1210 galaxyEnaQ1Ba-1-17,1210 galaxyEnaQ2Ay-120,1210 galaxyEnaQ2Ay-122,1210 galaxyEnaQ2Ay-4,1210 galaxyEnaQ2Ay-5,1210 galaxyEnaQ2Ay-6,1210 galaxyEnaQ3Ay-4,1210 galaxyEnaQ3Ay-5,1210 galaxyEnaQ3Ay-9,1210 galaxyEnaQ3B-1-1-7,1210 galaxyEnaQ3B-1-617-2,1210 microdel,189 microdel,218 microdel,245 rfam,134 vaccines,614 variantMuts,1190 variantMuts,1208 thanks addgene,238 augustusGene,248 crisprDet,143 genscan,170 kimNp,106 kimRnaMod,231 kimTranscripts,449 ncbiGeneBGP,184 ncbiProducts,200 nextstrainClade,219 nextstrainFreq,352 nextstrainGene,168 nextstrainParsimony,431 nextstrainSamples,908 recomb,313 resist,141 resistPred,233 resistPred,255 sarsCov2Phylo,856 sarsCov2PhyloPub,962 spikeMuts,356 transcriptome,455 unipCov2AliSwissprot,430 unipCov2Chain,659 unipCov2DisulfBond,655 unipCov2Domain,654 unipCov2Interest,313 unipCov2LocCytopl,654 unipCov2LocExtra,654 unipCov2LocSignal,655 unipCov2LocTransMemb,655 unipCov2Modif,658 unipCov2Mut,655 unipCov2Other,655 unipCov2Repeat,653 unipCov2Struct,657 that Calu3_07hpi,39 Calu3_07hpi,154 Calu3_07hpi,217 IgG_Z-score-_COVID-19_patients,57 IgG_Z-score-_COVID-19_patients,84 IgG_Z-score-_COVID-19_patients,316 IgM_Z-score-_COVID-19_patients,57 IgM_Z-score-_COVID-19_patients,84 IgM_Z-score-_COVID-19_patients,316 ORFs,37 ORFs,152 ORFs,215 PhyloCSF_smooth,82 PhyloCSF_smooth,161 PhyloCSF_smooth,552 PhyloCSF_smooth,563 PhyloCSF_smooth,593 PhyloCSFpower,97 PhyloCSFpower,176 PhyloCSFpower,567 PhyloCSFpower,578 PhyloCSFpower,608 Q0_tracks,67 Q0_tracks,166 Q0_tracks,289 Q0_tracks,379 Q0_tracks,447 Q0_tracks,518 Q0_tracks,631 Q0_tracks,641 Q0_tracks,716 Q0_tracks,735 Q0_tracks,764 Q0_tracks,772 Q0_tracks,1096 Q0_tracks,1189 Q1_tracks,69 Q1_tracks,168 Q1_tracks,291 Q1_tracks,381 Q1_tracks,449 Q1_tracks,520 Q1_tracks,633 Q1_tracks,643 Q1_tracks,718 Q1_tracks,737 Q1_tracks,766 Q1_tracks,774 Q1_tracks,1098 Q1_tracks,1191 Q2_tracks,69 Q2_tracks,168 Q2_tracks,291 Q2_tracks,381 Q2_tracks,449 Q2_tracks,520 Q2_tracks,633 Q2_tracks,643 Q2_tracks,718 Q2_tracks,737 Q2_tracks,766 Q2_tracks,774 Q2_tracks,1098 Q2_tracks,1191 Q3_tracks,69 Q3_tracks,168 Q3_tracks,291 Q3_tracks,381 Q3_tracks,449 Q3_tracks,520 Q3_tracks,633 Q3_tracks,643 Q3_tracks,718 Q3_tracks,737 Q3_tracks,766 Q3_tracks,774 Q3_tracks,1098 Q3_tracks,1191 Vero6_05hpi,39 Vero6_05hpi,154 Vero6_05hpi,217 Vero6_24hpi,39 Vero6_24hpi,154 Vero6_24hpi,217 abEscape,23 abEscape,300 abEscape,316 abEscape,340 abEscape,386 abEscape,395 abEscape,713 abEscape,757 abEscape,816 abEscape,846 addgene,21 addgene,116 artic,99 articV4,99 articV4_1,112 bloomEscMabAvg,27 bloomEscMabAvg,304 bloomEscMabAvg,320 bloomEscMabAvg,344 bloomEscMabAvg,390 bloomEscMabAvg,399 bloomEscMabAvg,717 bloomEscMabAvg,761 bloomEscMabAvg,820 bloomEscMabAvg,850 bloomEscMax,33 bloomEscMax,310 bloomEscMax,326 bloomEscMax,350 bloomEscMax,396 bloomEscMax,405 bloomEscMax,723 bloomEscMax,767 bloomEscMax,826 bloomEscMax,856 bloomEscSerumAvg,28 bloomEscSerumAvg,305 bloomEscSerumAvg,321 bloomEscSerumAvg,345 bloomEscSerumAvg,391 bloomEscSerumAvg,400 bloomEscSerumAvg,718 bloomEscSerumAvg,762 bloomEscSerumAvg,821 bloomEscSerumAvg,851 bloomEscTop,31 bloomEscTop,308 bloomEscTop,324 bloomEscTop,348 bloomEscTop,394 bloomEscTop,403 bloomEscTop,721 bloomEscTop,765 bloomEscTop,824 bloomEscTop,854 bpmIggCovidSum,66 bpmIggCovidSum,93 bpmIggCovidSum,325 bpmIgmCovidSum,66 bpmIgmCovidSum,93 bpmIgmCovidSum,325 cas13Crispr,54 cas13Crispr,74 cas13Crispr,182 cas13Crispr,309 cas13Crispr,339 cas13Crispr,384 cd8escape,101 contacts,51 contacts,256 contacts,312 cpgIslandExt,114 cpgIslandExt,178 cpgIslandExtUnmasked,117 cpgIslandExtUnmasked,181 cpgIslandSuper,114 cpgIslandSuper,178 epitopes,257 epitopes,292 escape,8 escape,30 escape,307 escape,323 escape,347 escape,393 escape,402 escape,720 escape,764 escape,823 escape,853 galaxyEna,69 galaxyEna,168 galaxyEna,291 galaxyEna,381 galaxyEna,449 galaxyEna,520 galaxyEna,633 galaxyEna,643 galaxyEna,718 galaxyEna,737 galaxyEna,766 galaxyEna,774 galaxyEna,1098 galaxyEna,1191 galaxyEnaQ0Ba-1,65 galaxyEnaQ0Ba-1,164 galaxyEnaQ0Ba-1,287 galaxyEnaQ0Ba-1,377 galaxyEnaQ0Ba-1,445 galaxyEnaQ0Ba-1,516 galaxyEnaQ0Ba-1,629 galaxyEnaQ0Ba-1,639 galaxyEnaQ0Ba-1,714 galaxyEnaQ0Ba-1,733 galaxyEnaQ0Ba-1,762 galaxyEnaQ0Ba-1,770 galaxyEnaQ0Ba-1,1094 galaxyEnaQ0Ba-1,1187 galaxyEnaQ0Ba-1-1,65 galaxyEnaQ0Ba-1-1,164 galaxyEnaQ0Ba-1-1,287 galaxyEnaQ0Ba-1-1,377 galaxyEnaQ0Ba-1-1,445 galaxyEnaQ0Ba-1-1,516 galaxyEnaQ0Ba-1-1,629 galaxyEnaQ0Ba-1-1,639 galaxyEnaQ0Ba-1-1,714 galaxyEnaQ0Ba-1-1,733 galaxyEnaQ0Ba-1-1,762 galaxyEnaQ0Ba-1-1,770 galaxyEnaQ0Ba-1-1,1094 galaxyEnaQ0Ba-1-1,1187 galaxyEnaQ0Ba-1-1-11,65 galaxyEnaQ0Ba-1-1-11,164 galaxyEnaQ0Ba-1-1-11,287 galaxyEnaQ0Ba-1-1-11,377 galaxyEnaQ0Ba-1-1-11,445 galaxyEnaQ0Ba-1-1-11,516 galaxyEnaQ0Ba-1-1-11,629 galaxyEnaQ0Ba-1-1-11,639 galaxyEnaQ0Ba-1-1-11,714 galaxyEnaQ0Ba-1-1-11,733 galaxyEnaQ0Ba-1-1-11,762 galaxyEnaQ0Ba-1-1-11,770 galaxyEnaQ0Ba-1-1-11,1094 galaxyEnaQ0Ba-1-1-11,1187 galaxyEnaQ0Ba-1-17,65 galaxyEnaQ0Ba-1-17,164 galaxyEnaQ0Ba-1-17,287 galaxyEnaQ0Ba-1-17,377 galaxyEnaQ0Ba-1-17,445 galaxyEnaQ0Ba-1-17,516 galaxyEnaQ0Ba-1-17,629 galaxyEnaQ0Ba-1-17,639 galaxyEnaQ0Ba-1-17,714 galaxyEnaQ0Ba-1-17,733 galaxyEnaQ0Ba-1-17,762 galaxyEnaQ0Ba-1-17,770 galaxyEnaQ0Ba-1-17,1094 galaxyEnaQ0Ba-1-17,1187 galaxyEnaQ0Ba-2,65 galaxyEnaQ0Ba-2,164 galaxyEnaQ0Ba-2,287 galaxyEnaQ0Ba-2,377 galaxyEnaQ0Ba-2,445 galaxyEnaQ0Ba-2,516 galaxyEnaQ0Ba-2,629 galaxyEnaQ0Ba-2,639 galaxyEnaQ0Ba-2,714 galaxyEnaQ0Ba-2,733 galaxyEnaQ0Ba-2,762 galaxyEnaQ0Ba-2,770 galaxyEnaQ0Ba-2,1094 galaxyEnaQ0Ba-2,1187 galaxyEnaQ1Ay-4,65 galaxyEnaQ1Ay-4,164 galaxyEnaQ1Ay-4,287 galaxyEnaQ1Ay-4,377 galaxyEnaQ1Ay-4,445 galaxyEnaQ1Ay-4,516 galaxyEnaQ1Ay-4,629 galaxyEnaQ1Ay-4,639 galaxyEnaQ1Ay-4,714 galaxyEnaQ1Ay-4,733 galaxyEnaQ1Ay-4,762 galaxyEnaQ1Ay-4,770 galaxyEnaQ1Ay-4,1094 galaxyEnaQ1Ay-4,1187 galaxyEnaQ1Ay-4-2,65 galaxyEnaQ1Ay-4-2,164 galaxyEnaQ1Ay-4-2,287 galaxyEnaQ1Ay-4-2,377 galaxyEnaQ1Ay-4-2,445 galaxyEnaQ1Ay-4-2,516 galaxyEnaQ1Ay-4-2,629 galaxyEnaQ1Ay-4-2,639 galaxyEnaQ1Ay-4-2,714 galaxyEnaQ1Ay-4-2,733 galaxyEnaQ1Ay-4-2,762 galaxyEnaQ1Ay-4-2,770 galaxyEnaQ1Ay-4-2,1094 galaxyEnaQ1Ay-4-2,1187 galaxyEnaQ1Ay-4-2-2,65 galaxyEnaQ1Ay-4-2-2,164 galaxyEnaQ1Ay-4-2-2,287 galaxyEnaQ1Ay-4-2-2,377 galaxyEnaQ1Ay-4-2-2,445 galaxyEnaQ1Ay-4-2-2,516 galaxyEnaQ1Ay-4-2-2,629 galaxyEnaQ1Ay-4-2-2,639 galaxyEnaQ1Ay-4-2-2,714 galaxyEnaQ1Ay-4-2-2,733 galaxyEnaQ1Ay-4-2-2,762 galaxyEnaQ1Ay-4-2-2,770 galaxyEnaQ1Ay-4-2-2,1094 galaxyEnaQ1Ay-4-2-2,1187 galaxyEnaQ1Ay-43,65 galaxyEnaQ1Ay-43,164 galaxyEnaQ1Ay-43,287 galaxyEnaQ1Ay-43,377 galaxyEnaQ1Ay-43,445 galaxyEnaQ1Ay-43,516 galaxyEnaQ1Ay-43,629 galaxyEnaQ1Ay-43,639 galaxyEnaQ1Ay-43,714 galaxyEnaQ1Ay-43,733 galaxyEnaQ1Ay-43,762 galaxyEnaQ1Ay-43,770 galaxyEnaQ1Ay-43,1094 galaxyEnaQ1Ay-43,1187 galaxyEnaQ1Ba-1-17,65 galaxyEnaQ1Ba-1-17,164 galaxyEnaQ1Ba-1-17,287 galaxyEnaQ1Ba-1-17,377 galaxyEnaQ1Ba-1-17,445 galaxyEnaQ1Ba-1-17,516 galaxyEnaQ1Ba-1-17,629 galaxyEnaQ1Ba-1-17,639 galaxyEnaQ1Ba-1-17,714 galaxyEnaQ1Ba-1-17,733 galaxyEnaQ1Ba-1-17,762 galaxyEnaQ1Ba-1-17,770 galaxyEnaQ1Ba-1-17,1094 galaxyEnaQ1Ba-1-17,1187 galaxyEnaQ2Ay-120,65 galaxyEnaQ2Ay-120,164 galaxyEnaQ2Ay-120,287 galaxyEnaQ2Ay-120,377 galaxyEnaQ2Ay-120,445 galaxyEnaQ2Ay-120,516 galaxyEnaQ2Ay-120,629 galaxyEnaQ2Ay-120,639 galaxyEnaQ2Ay-120,714 galaxyEnaQ2Ay-120,733 galaxyEnaQ2Ay-120,762 galaxyEnaQ2Ay-120,770 galaxyEnaQ2Ay-120,1094 galaxyEnaQ2Ay-120,1187 galaxyEnaQ2Ay-122,65 galaxyEnaQ2Ay-122,164 galaxyEnaQ2Ay-122,287 galaxyEnaQ2Ay-122,377 galaxyEnaQ2Ay-122,445 galaxyEnaQ2Ay-122,516 galaxyEnaQ2Ay-122,629 galaxyEnaQ2Ay-122,639 galaxyEnaQ2Ay-122,714 galaxyEnaQ2Ay-122,733 galaxyEnaQ2Ay-122,762 galaxyEnaQ2Ay-122,770 galaxyEnaQ2Ay-122,1094 galaxyEnaQ2Ay-122,1187 galaxyEnaQ2Ay-4,65 galaxyEnaQ2Ay-4,164 galaxyEnaQ2Ay-4,287 galaxyEnaQ2Ay-4,377 galaxyEnaQ2Ay-4,445 galaxyEnaQ2Ay-4,516 galaxyEnaQ2Ay-4,629 galaxyEnaQ2Ay-4,639 galaxyEnaQ2Ay-4,714 galaxyEnaQ2Ay-4,733 galaxyEnaQ2Ay-4,762 galaxyEnaQ2Ay-4,770 galaxyEnaQ2Ay-4,1094 galaxyEnaQ2Ay-4,1187 galaxyEnaQ2Ay-5,65 galaxyEnaQ2Ay-5,164 galaxyEnaQ2Ay-5,287 galaxyEnaQ2Ay-5,377 galaxyEnaQ2Ay-5,445 galaxyEnaQ2Ay-5,516 galaxyEnaQ2Ay-5,629 galaxyEnaQ2Ay-5,639 galaxyEnaQ2Ay-5,714 galaxyEnaQ2Ay-5,733 galaxyEnaQ2Ay-5,762 galaxyEnaQ2Ay-5,770 galaxyEnaQ2Ay-5,1094 galaxyEnaQ2Ay-5,1187 galaxyEnaQ2Ay-6,65 galaxyEnaQ2Ay-6,164 galaxyEnaQ2Ay-6,287 galaxyEnaQ2Ay-6,377 galaxyEnaQ2Ay-6,445 galaxyEnaQ2Ay-6,516 galaxyEnaQ2Ay-6,629 galaxyEnaQ2Ay-6,639 galaxyEnaQ2Ay-6,714 galaxyEnaQ2Ay-6,733 galaxyEnaQ2Ay-6,762 galaxyEnaQ2Ay-6,770 galaxyEnaQ2Ay-6,1094 galaxyEnaQ2Ay-6,1187 galaxyEnaQ3Ay-4,65 galaxyEnaQ3Ay-4,164 galaxyEnaQ3Ay-4,287 galaxyEnaQ3Ay-4,377 galaxyEnaQ3Ay-4,445 galaxyEnaQ3Ay-4,516 galaxyEnaQ3Ay-4,629 galaxyEnaQ3Ay-4,639 galaxyEnaQ3Ay-4,714 galaxyEnaQ3Ay-4,733 galaxyEnaQ3Ay-4,762 galaxyEnaQ3Ay-4,770 galaxyEnaQ3Ay-4,1094 galaxyEnaQ3Ay-4,1187 galaxyEnaQ3Ay-5,65 galaxyEnaQ3Ay-5,164 galaxyEnaQ3Ay-5,287 galaxyEnaQ3Ay-5,377 galaxyEnaQ3Ay-5,445 galaxyEnaQ3Ay-5,516 galaxyEnaQ3Ay-5,629 galaxyEnaQ3Ay-5,639 galaxyEnaQ3Ay-5,714 galaxyEnaQ3Ay-5,733 galaxyEnaQ3Ay-5,762 galaxyEnaQ3Ay-5,770 galaxyEnaQ3Ay-5,1094 galaxyEnaQ3Ay-5,1187 galaxyEnaQ3Ay-9,65 galaxyEnaQ3Ay-9,164 galaxyEnaQ3Ay-9,287 galaxyEnaQ3Ay-9,377 galaxyEnaQ3Ay-9,445 galaxyEnaQ3Ay-9,516 galaxyEnaQ3Ay-9,629 galaxyEnaQ3Ay-9,639 galaxyEnaQ3Ay-9,714 galaxyEnaQ3Ay-9,733 galaxyEnaQ3Ay-9,762 galaxyEnaQ3Ay-9,770 galaxyEnaQ3Ay-9,1094 galaxyEnaQ3Ay-9,1187 galaxyEnaQ3B-1-1-7,65 galaxyEnaQ3B-1-1-7,164 galaxyEnaQ3B-1-1-7,287 galaxyEnaQ3B-1-1-7,377 galaxyEnaQ3B-1-1-7,445 galaxyEnaQ3B-1-1-7,516 galaxyEnaQ3B-1-1-7,629 galaxyEnaQ3B-1-1-7,639 galaxyEnaQ3B-1-1-7,714 galaxyEnaQ3B-1-1-7,733 galaxyEnaQ3B-1-1-7,762 galaxyEnaQ3B-1-1-7,770 galaxyEnaQ3B-1-1-7,1094 galaxyEnaQ3B-1-1-7,1187 galaxyEnaQ3B-1-617-2,65 galaxyEnaQ3B-1-617-2,164 galaxyEnaQ3B-1-617-2,287 galaxyEnaQ3B-1-617-2,377 galaxyEnaQ3B-1-617-2,445 galaxyEnaQ3B-1-617-2,516 galaxyEnaQ3B-1-617-2,629 galaxyEnaQ3B-1-617-2,639 galaxyEnaQ3B-1-617-2,714 galaxyEnaQ3B-1-617-2,733 galaxyEnaQ3B-1-617-2,762 galaxyEnaQ3B-1-617-2,770 galaxyEnaQ3B-1-617-2,1094 galaxyEnaQ3B-1-617-2,1187 genscan,141 gold,74 gold,144 gordon2,65 gordon2,148 gordon2,193 gordon2,204 iedb,70 kimIvtCov,78 kimRnaMod,86 kimRnaMod,98 kimRnaMod,146 kimTranscripts,125 kimTranscripts,159 kimTranscripts,202 kimTranscripts,322 kimTranscripts,363 mccoy,23 mccoy,300 mccoy,316 mccoy,340 mccoy,386 mccoy,395 mccoy,713 mccoy,757 mccoy,816 mccoy,846 microdel,14 microdel,63 microdel,194 multiz7way,122 multiz7way,153 multiz7way,193 multiz7way,215 multiz7way,242 multiz7way,546 multiz7way,649 multiz7way,752 ncbiGeneBGP,68 ncbiProducts,84 nextstrainClade,20 nextstrainClade,41 nextstrainClade,65 nextstrainClade,136 nextstrainClade,169 nextstrainFreq,17 nextstrainFreq,41 nextstrainFreq,57 nextstrainFreq,161 nextstrainGene,18 nextstrainGene,37 nextstrainGene,119 nextstrainParsimony,30 nextstrainParsimony,58 nextstrainParsimony,74 nextstrainParsimony,117 nextstrainParsimony,162 nextstrainParsimony,212 nextstrainParsimony,318 nextstrainSamples,27 nextstrainSamples,52 nextstrainSamples,75 nextstrainSamples,102 nextstrainSamples,131 nextstrainSamples,134 nextstrainSamples,163 nextstrainSamples,219 nextstrainSamples,242 nextstrainSamples,572 nextstrainSamples,691 nextstrainSamples,756 pbm,66 pbm,93 pbm,325 pbmShanghai,71 pbmShanghai,127 pbmShanghai,150 pbmShanghai,309 pbmShanghai,346 pbmShanghai,442 pdb,121 phyloGenes,155 phyloGenes,159 phyloGenes,251 phyloGenes,294 phyloGenes,360 phyloGenes,449 pond,60 pond,161 pond,173 pond,286 poranHla1,173 poranHla2,173 potPathoIndel,24 potPathoIndel,67 potPathoIndel,86 potPathoIndel,112 primers,23 problematicSites,93 problematicSites,310 problematicSites,419 pyle,86 pyle,124 pyle,187 rapid,73 rapid,92 rapid,140 rapid,180 rapid,253 rappuoli,8 rappuoli,30 rappuoli,307 rappuoli,323 rappuoli,347 rappuoli,393 rappuoli,402 rappuoli,720 rappuoli,764 rappuoli,823 rappuoli,853 recomb,111 recomb,113 recomb,150 recomb,174 resist,5 resist,22 resist,112 resistPred,4 resistPred,30 resistPred,88 resistPred,204 rfam,70 rosettaMhc,43 sarsCov2Phylo,257 sarsCov2Phylo,290 sarsCov2Phylo,633 sarsCov2Phylo,687 sarsCov2Phylo,780 sarsCov2PhyloPub,264 sarsCov2PhyloPub,297 sarsCov2PhyloPub,657 sarsCov2PhyloPub,716 sarsCov2PhyloPub,729 sarsCov2PhyloPub,794 sarsCov2PhyloPub,1030 spikeMuts,85 strainCons119way,178 strainCons119way,182 strainCons119way,304 strainCons119way,471 strainCons119way,502 strainCons119way,542 strainCons119way,564 strainCons119way,591 strainCons119way,896 strainCons119way,998 strainCons119way,1512 strainCons119way,1678 strainCons119way,1801 strainCons119way,1864 strainCons119way,2086 strainCons44way,126 strainCons44way,130 strainCons44way,252 strainCons44way,419 strainCons44way,450 strainCons44way,490 strainCons44way,512 strainCons44way,539 strainCons44way,844 strainCons44way,946 strainCons44way,1182 strainCons44way,1273 strainCons44way,1396 strainCons44way,1459 strainCons44way,1681 swift,117 swift,182 targets,53 targets,157 transcriptome,117 transcriptome,136 transcriptome,369 treangen,25 treangen,33 unipCov2AliSwissprot,289 unipCov2Chain,519 unipCov2DisulfBond,515 unipCov2Domain,514 unipCov2Interest,195 unipCov2LocCytopl,514 unipCov2LocExtra,514 unipCov2LocSignal,515 unipCov2LocTransMemb,515 unipCov2Modif,518 unipCov2Mut,515 unipCov2Other,515 unipCov2Repeat,513 unipCov2Struct,517 vaccines,74 vaccines,180 variantMuts,48 varskip,105 weizmanOrfs,45 weizmanOrfs,160 weizmanOrfs,223 the Calu3_07hpi,13 Calu3_07hpi,43 Calu3_07hpi,56 Calu3_07hpi,61 Calu3_07hpi,68 Calu3_07hpi,84 Calu3_07hpi,164 Calu3_07hpi,174 Calu3_07hpi,189 Calu3_07hpi,192 Calu3_07hpi,204 Calu3_07hpi,231 Calu3_07hpi,233 Calu3_07hpi,263 Calu3_07hpi,267 Calu3_07hpi,274 Calu3_07hpi,289 Calu3_07hpi,298 Calu3_07hpi,301 Calu3_07hpi,307 Calu3_07hpi,315 Calu3_07hpi,324 Calu3_07hpi,368 Entropy,7 IgG_Z-score-_COVID-19_patients,28 IgG_Z-score-_COVID-19_patients,47 IgG_Z-score-_COVID-19_patients,58 IgG_Z-score-_COVID-19_patients,63 IgG_Z-score-_COVID-19_patients,67 IgG_Z-score-_COVID-19_patients,88 IgG_Z-score-_COVID-19_patients,96 IgG_Z-score-_COVID-19_patients,103 IgG_Z-score-_COVID-19_patients,111 IgG_Z-score-_COVID-19_patients,132 IgG_Z-score-_COVID-19_patients,138 IgG_Z-score-_COVID-19_patients,151 IgG_Z-score-_COVID-19_patients,168 IgG_Z-score-_COVID-19_patients,174 IgG_Z-score-_COVID-19_patients,188 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IgM_Z-score-_COVID-19_patients,215 IgM_Z-score-_COVID-19_patients,251 IgM_Z-score-_COVID-19_patients,260 IgM_Z-score-_COVID-19_patients,271 IgM_Z-score-_COVID-19_patients,283 IgM_Z-score-_COVID-19_patients,291 IgM_Z-score-_COVID-19_patients,300 IgM_Z-score-_COVID-19_patients,307 IgM_Z-score-_COVID-19_patients,321 IgM_Z-score-_COVID-19_patients,350 IgM_Z-score-_COVID-19_patients,365 ORFs,11 ORFs,41 ORFs,54 ORFs,59 ORFs,66 ORFs,82 ORFs,162 ORFs,172 ORFs,187 ORFs,190 ORFs,202 ORFs,229 ORFs,231 ORFs,261 ORFs,265 ORFs,272 ORFs,287 ORFs,296 ORFs,299 ORFs,305 ORFs,313 ORFs,322 ORFs,366 PhyloCSF_smooth,39 PhyloCSF_smooth,52 PhyloCSF_smooth,72 PhyloCSF_smooth,79 PhyloCSF_smooth,85 PhyloCSF_smooth,122 PhyloCSF_smooth,125 PhyloCSF_smooth,130 PhyloCSF_smooth,168 PhyloCSF_smooth,179 PhyloCSF_smooth,184 PhyloCSF_smooth,192 PhyloCSF_smooth,195 PhyloCSF_smooth,199 PhyloCSF_smooth,203 PhyloCSF_smooth,207 PhyloCSF_smooth,215 PhyloCSF_smooth,224 PhyloCSF_smooth,300 PhyloCSF_smooth,306 PhyloCSF_smooth,315 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PhyloCSFpower,210 PhyloCSFpower,214 PhyloCSFpower,218 PhyloCSFpower,222 PhyloCSFpower,230 PhyloCSFpower,239 PhyloCSFpower,315 PhyloCSFpower,321 PhyloCSFpower,330 PhyloCSFpower,340 PhyloCSFpower,350 PhyloCSFpower,354 PhyloCSFpower,358 PhyloCSFpower,364 PhyloCSFpower,368 PhyloCSFpower,375 PhyloCSFpower,402 PhyloCSFpower,415 PhyloCSFpower,427 PhyloCSFpower,433 PhyloCSFpower,440 PhyloCSFpower,444 PhyloCSFpower,466 PhyloCSFpower,475 PhyloCSFpower,478 PhyloCSFpower,482 PhyloCSFpower,490 PhyloCSFpower,496 PhyloCSFpower,500 PhyloCSFpower,503 PhyloCSFpower,508 PhyloCSFpower,513 PhyloCSFpower,530 PhyloCSFpower,543 PhyloCSFpower,562 PhyloCSFpower,574 PhyloCSFpower,584 PhyloCSFpower,588 PhyloCSFpower,606 PhyloCSFpower,614 PhyloCSFpower,618 PhyloCSFpower,623 PhyloCSFpower,637 PhyloCSFpower,647 PhyloCSFpower,653 Q0_tracks,24 Q0_tracks,29 Q0_tracks,75 Q0_tracks,118 Q0_tracks,123 Q0_tracks,136 Q0_tracks,239 Q0_tracks,245 Q0_tracks,251 Q0_tracks,259 Q0_tracks,276 Q0_tracks,302 Q0_tracks,305 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Q1_tracks,649 Q1_tracks,652 Q1_tracks,657 Q1_tracks,692 Q1_tracks,699 Q1_tracks,727 Q1_tracks,746 Q1_tracks,750 Q1_tracks,754 Q1_tracks,775 Q1_tracks,780 Q1_tracks,820 Q1_tracks,824 Q1_tracks,835 Q1_tracks,884 Q1_tracks,915 Q1_tracks,919 Q1_tracks,922 Q1_tracks,943 Q1_tracks,950 Q1_tracks,972 Q1_tracks,978 Q1_tracks,986 Q1_tracks,1025 Q1_tracks,1041 Q1_tracks,1048 Q1_tracks,1060 Q1_tracks,1064 Q1_tracks,1074 Q1_tracks,1080 Q1_tracks,1093 Q1_tracks,1101 Q1_tracks,1108 Q1_tracks,1114 Q1_tracks,1120 Q1_tracks,1125 Q1_tracks,1130 Q1_tracks,1133 Q1_tracks,1135 Q1_tracks,1141 Q1_tracks,1153 Q1_tracks,1170 Q1_tracks,1176 Q1_tracks,1183 Q1_tracks,1215 Q1_tracks,1221 Q1_tracks,1225 Q2_tracks,26 Q2_tracks,31 Q2_tracks,77 Q2_tracks,120 Q2_tracks,125 Q2_tracks,138 Q2_tracks,241 Q2_tracks,247 Q2_tracks,253 Q2_tracks,261 Q2_tracks,278 Q2_tracks,304 Q2_tracks,307 Q2_tracks,316 Q2_tracks,325 Q2_tracks,328 Q2_tracks,330 Q2_tracks,335 Q2_tracks,341 Q2_tracks,345 Q2_tracks,351 Q2_tracks,354 Q2_tracks,370 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Q2_tracks,1153 Q2_tracks,1170 Q2_tracks,1176 Q2_tracks,1183 Q2_tracks,1215 Q2_tracks,1221 Q2_tracks,1225 Q3_tracks,26 Q3_tracks,31 Q3_tracks,77 Q3_tracks,120 Q3_tracks,125 Q3_tracks,138 Q3_tracks,241 Q3_tracks,247 Q3_tracks,253 Q3_tracks,261 Q3_tracks,278 Q3_tracks,304 Q3_tracks,307 Q3_tracks,316 Q3_tracks,325 Q3_tracks,328 Q3_tracks,330 Q3_tracks,335 Q3_tracks,341 Q3_tracks,345 Q3_tracks,351 Q3_tracks,354 Q3_tracks,370 Q3_tracks,378 Q3_tracks,384 Q3_tracks,391 Q3_tracks,425 Q3_tracks,431 Q3_tracks,437 Q3_tracks,444 Q3_tracks,484 Q3_tracks,492 Q3_tracks,500 Q3_tracks,504 Q3_tracks,509 Q3_tracks,513 Q3_tracks,517 Q3_tracks,524 Q3_tracks,528 Q3_tracks,557 Q3_tracks,563 Q3_tracks,566 Q3_tracks,571 Q3_tracks,579 Q3_tracks,583 Q3_tracks,594 Q3_tracks,600 Q3_tracks,608 Q3_tracks,612 Q3_tracks,616 Q3_tracks,627 Q3_tracks,630 Q3_tracks,639 Q3_tracks,649 Q3_tracks,652 Q3_tracks,657 Q3_tracks,692 Q3_tracks,699 Q3_tracks,727 Q3_tracks,746 Q3_tracks,750 Q3_tracks,754 Q3_tracks,775 Q3_tracks,780 Q3_tracks,820 Q3_tracks,824 Q3_tracks,835 Q3_tracks,884 Q3_tracks,915 Q3_tracks,919 Q3_tracks,922 Q3_tracks,943 Q3_tracks,950 Q3_tracks,972 Q3_tracks,978 Q3_tracks,986 Q3_tracks,1025 Q3_tracks,1041 Q3_tracks,1048 Q3_tracks,1060 Q3_tracks,1064 Q3_tracks,1074 Q3_tracks,1080 Q3_tracks,1093 Q3_tracks,1101 Q3_tracks,1108 Q3_tracks,1114 Q3_tracks,1120 Q3_tracks,1125 Q3_tracks,1130 Q3_tracks,1133 Q3_tracks,1135 Q3_tracks,1141 Q3_tracks,1153 Q3_tracks,1170 Q3_tracks,1176 Q3_tracks,1183 Q3_tracks,1215 Q3_tracks,1221 Q3_tracks,1225 Starr_Bloom,24 Starr_Bloom,27 Starr_Bloom,44 Starr_Bloom,54 Starr_Bloom,80 Starr_Bloom,97 Starr_Bloom,101 Starr_Bloom,110 Starr_Bloom,119 Starr_Bloom,126 Starr_Bloom,146 Starr_Bloom,151 Starr_Bloom,159 Starr_Bloom,164 Starr_Bloom,184 Starr_Bloom,199 Starr_Bloom,207 Starr_Bloom,216 Starr_Bloom_bind,25 Starr_Bloom_bind,28 Starr_Bloom_bind,41 Starr_Bloom_bind,51 Starr_Bloom_bind,74 Starr_Bloom_bind,91 Starr_Bloom_bind,95 Starr_Bloom_bind,104 Starr_Bloom_bind,113 Starr_Bloom_bind,120 Starr_Bloom_bind,140 Starr_Bloom_bind,145 Starr_Bloom_bind,153 Starr_Bloom_bind,158 Starr_Bloom_bind,178 Starr_Bloom_bind,193 Starr_Bloom_bind,201 Starr_Bloom_bind,210 Vero6_05hpi,13 Vero6_05hpi,43 Vero6_05hpi,56 Vero6_05hpi,61 Vero6_05hpi,68 Vero6_05hpi,84 Vero6_05hpi,164 Vero6_05hpi,174 Vero6_05hpi,189 Vero6_05hpi,192 Vero6_05hpi,204 Vero6_05hpi,231 Vero6_05hpi,233 Vero6_05hpi,263 Vero6_05hpi,267 Vero6_05hpi,274 Vero6_05hpi,289 Vero6_05hpi,298 Vero6_05hpi,301 Vero6_05hpi,307 Vero6_05hpi,315 Vero6_05hpi,324 Vero6_05hpi,368 Vero6_24hpi,13 Vero6_24hpi,43 Vero6_24hpi,56 Vero6_24hpi,61 Vero6_24hpi,68 Vero6_24hpi,84 Vero6_24hpi,164 Vero6_24hpi,174 Vero6_24hpi,189 Vero6_24hpi,192 Vero6_24hpi,204 Vero6_24hpi,231 Vero6_24hpi,233 Vero6_24hpi,263 Vero6_24hpi,267 Vero6_24hpi,274 Vero6_24hpi,289 Vero6_24hpi,298 Vero6_24hpi,301 Vero6_24hpi,307 Vero6_24hpi,315 Vero6_24hpi,324 Vero6_24hpi,368 abEscape,16 abEscape,36 abEscape,41 abEscape,47 abEscape,50 abEscape,61 abEscape,72 abEscape,79 abEscape,96 abEscape,144 abEscape,168 abEscape,177 abEscape,232 abEscape,242 abEscape,252 abEscape,257 abEscape,277 abEscape,286 abEscape,289 abEscape,294 abEscape,317 abEscape,320 abEscape,330 abEscape,334 abEscape,341 abEscape,372 abEscape,388 abEscape,424 abEscape,432 abEscape,437 abEscape,446 abEscape,455 abEscape,478 abEscape,487 abEscape,491 abEscape,506 abEscape,512 abEscape,515 abEscape,531 abEscape,537 abEscape,547 abEscape,564 abEscape,574 abEscape,605 abEscape,615 abEscape,638 abEscape,641 abEscape,647 abEscape,651 abEscape,659 abEscape,668 abEscape,709 abEscape,752 addgene,8 addgene,67 addgene,78 addgene,96 addgene,112 addgene,123 addgene,127 addgene,142 addgene,164 addgene,168 addgene,191 addgene,211 addgene,221 addgene,234 addgene,255 artic,17 artic,20 artic,43 artic,54 artic,66 artic,74 artic,83 artic,90 artic,104 artic,133 artic,148 articV4,17 articV4,20 articV4,46 articV4,66 articV4,74 articV4,83 articV4,90 articV4,104 articV4,133 articV4,148 articV4_1,17 articV4_1,20 articV4_1,33 articV4_1,39 articV4_1,57 articV4_1,77 articV4_1,85 articV4_1,96 articV4_1,103 articV4_1,117 articV4_1,146 articV4_1,161 augustusGene,20 augustusGene,25 augustusGene,30 augustusGene,38 augustusGene,61 augustusGene,69 augustusGene,81 augustusGene,109 augustusGene,143 augustusGene,165 augustusGene,172 augustusGene,177 augustusGene,185 augustusGene,240 augustusGene,250 augustusGene,255 augustusGene,258 augustusGene,261 augustusGene,272 augustusGene,275 bloomEscMabAvg,20 bloomEscMabAvg,40 bloomEscMabAvg,45 bloomEscMabAvg,51 bloomEscMabAvg,54 bloomEscMabAvg,65 bloomEscMabAvg,76 bloomEscMabAvg,83 bloomEscMabAvg,100 bloomEscMabAvg,148 bloomEscMabAvg,172 bloomEscMabAvg,181 bloomEscMabAvg,236 bloomEscMabAvg,246 bloomEscMabAvg,256 bloomEscMabAvg,261 bloomEscMabAvg,281 bloomEscMabAvg,290 bloomEscMabAvg,293 bloomEscMabAvg,298 bloomEscMabAvg,321 bloomEscMabAvg,324 bloomEscMabAvg,334 bloomEscMabAvg,338 bloomEscMabAvg,345 bloomEscMabAvg,376 bloomEscMabAvg,392 bloomEscMabAvg,428 bloomEscMabAvg,436 bloomEscMabAvg,441 bloomEscMabAvg,450 bloomEscMabAvg,459 bloomEscMabAvg,482 bloomEscMabAvg,491 bloomEscMabAvg,495 bloomEscMabAvg,510 bloomEscMabAvg,516 bloomEscMabAvg,519 bloomEscMabAvg,535 bloomEscMabAvg,541 bloomEscMabAvg,551 bloomEscMabAvg,568 bloomEscMabAvg,578 bloomEscMabAvg,609 bloomEscMabAvg,619 bloomEscMabAvg,642 bloomEscMabAvg,645 bloomEscMabAvg,651 bloomEscMabAvg,655 bloomEscMabAvg,663 bloomEscMabAvg,672 bloomEscMabAvg,713 bloomEscMabAvg,756 bloomEscMax,26 bloomEscMax,46 bloomEscMax,51 bloomEscMax,57 bloomEscMax,60 bloomEscMax,71 bloomEscMax,82 bloomEscMax,89 bloomEscMax,106 bloomEscMax,154 bloomEscMax,178 bloomEscMax,187 bloomEscMax,242 bloomEscMax,252 bloomEscMax,262 bloomEscMax,267 bloomEscMax,287 bloomEscMax,296 bloomEscMax,299 bloomEscMax,304 bloomEscMax,327 bloomEscMax,330 bloomEscMax,340 bloomEscMax,344 bloomEscMax,351 bloomEscMax,382 bloomEscMax,398 bloomEscMax,434 bloomEscMax,442 bloomEscMax,447 bloomEscMax,456 bloomEscMax,465 bloomEscMax,488 bloomEscMax,497 bloomEscMax,501 bloomEscMax,516 bloomEscMax,522 bloomEscMax,525 bloomEscMax,541 bloomEscMax,547 bloomEscMax,557 bloomEscMax,574 bloomEscMax,584 bloomEscMax,615 bloomEscMax,625 bloomEscMax,648 bloomEscMax,651 bloomEscMax,657 bloomEscMax,661 bloomEscMax,669 bloomEscMax,678 bloomEscMax,719 bloomEscMax,762 bloomEscSerumAvg,21 bloomEscSerumAvg,41 bloomEscSerumAvg,46 bloomEscSerumAvg,52 bloomEscSerumAvg,55 bloomEscSerumAvg,66 bloomEscSerumAvg,77 bloomEscSerumAvg,84 bloomEscSerumAvg,101 bloomEscSerumAvg,149 bloomEscSerumAvg,173 bloomEscSerumAvg,182 bloomEscSerumAvg,237 bloomEscSerumAvg,247 bloomEscSerumAvg,257 bloomEscSerumAvg,262 bloomEscSerumAvg,282 bloomEscSerumAvg,291 bloomEscSerumAvg,294 bloomEscSerumAvg,299 bloomEscSerumAvg,322 bloomEscSerumAvg,325 bloomEscSerumAvg,335 bloomEscSerumAvg,339 bloomEscSerumAvg,346 bloomEscSerumAvg,377 bloomEscSerumAvg,393 bloomEscSerumAvg,429 bloomEscSerumAvg,437 bloomEscSerumAvg,442 bloomEscSerumAvg,451 bloomEscSerumAvg,460 bloomEscSerumAvg,483 bloomEscSerumAvg,492 bloomEscSerumAvg,496 bloomEscSerumAvg,511 bloomEscSerumAvg,517 bloomEscSerumAvg,520 bloomEscSerumAvg,536 bloomEscSerumAvg,542 bloomEscSerumAvg,552 bloomEscSerumAvg,569 bloomEscSerumAvg,579 bloomEscSerumAvg,610 bloomEscSerumAvg,620 bloomEscSerumAvg,643 bloomEscSerumAvg,646 bloomEscSerumAvg,652 bloomEscSerumAvg,656 bloomEscSerumAvg,664 bloomEscSerumAvg,673 bloomEscSerumAvg,714 bloomEscSerumAvg,757 bloomEscTop,24 bloomEscTop,44 bloomEscTop,49 bloomEscTop,55 bloomEscTop,58 bloomEscTop,69 bloomEscTop,80 bloomEscTop,87 bloomEscTop,104 bloomEscTop,152 bloomEscTop,176 bloomEscTop,185 bloomEscTop,240 bloomEscTop,250 bloomEscTop,260 bloomEscTop,265 bloomEscTop,285 bloomEscTop,294 bloomEscTop,297 bloomEscTop,302 bloomEscTop,325 bloomEscTop,328 bloomEscTop,338 bloomEscTop,342 bloomEscTop,349 bloomEscTop,380 bloomEscTop,396 bloomEscTop,432 bloomEscTop,440 bloomEscTop,445 bloomEscTop,454 bloomEscTop,463 bloomEscTop,486 bloomEscTop,495 bloomEscTop,499 bloomEscTop,514 bloomEscTop,520 bloomEscTop,523 bloomEscTop,539 bloomEscTop,545 bloomEscTop,555 bloomEscTop,572 bloomEscTop,582 bloomEscTop,613 bloomEscTop,623 bloomEscTop,646 bloomEscTop,649 bloomEscTop,655 bloomEscTop,659 bloomEscTop,667 bloomEscTop,676 bloomEscTop,717 bloomEscTop,760 bpmIggCovidSum,37 bpmIggCovidSum,56 bpmIggCovidSum,67 bpmIggCovidSum,72 bpmIggCovidSum,76 bpmIggCovidSum,97 bpmIggCovidSum,105 bpmIggCovidSum,112 bpmIggCovidSum,120 bpmIggCovidSum,141 bpmIggCovidSum,147 bpmIggCovidSum,160 bpmIggCovidSum,177 bpmIggCovidSum,183 bpmIggCovidSum,197 bpmIggCovidSum,201 bpmIggCovidSum,224 bpmIggCovidSum,260 bpmIggCovidSum,269 bpmIggCovidSum,280 bpmIggCovidSum,292 bpmIggCovidSum,300 bpmIggCovidSum,309 bpmIggCovidSum,316 bpmIggCovidSum,330 bpmIggCovidSum,359 bpmIggCovidSum,374 bpmIgmCovidSum,37 bpmIgmCovidSum,56 bpmIgmCovidSum,67 bpmIgmCovidSum,72 bpmIgmCovidSum,76 bpmIgmCovidSum,97 bpmIgmCovidSum,105 bpmIgmCovidSum,112 bpmIgmCovidSum,120 bpmIgmCovidSum,141 bpmIgmCovidSum,147 bpmIgmCovidSum,160 bpmIgmCovidSum,177 bpmIgmCovidSum,183 bpmIgmCovidSum,197 bpmIgmCovidSum,201 bpmIgmCovidSum,224 bpmIgmCovidSum,260 bpmIgmCovidSum,269 bpmIgmCovidSum,280 bpmIgmCovidSum,292 bpmIgmCovidSum,300 bpmIgmCovidSum,309 bpmIgmCovidSum,316 bpmIgmCovidSum,330 bpmIgmCovidSum,359 bpmIgmCovidSum,374 cas13Crispr,13 cas13Crispr,21 cas13Crispr,37 cas13Crispr,67 cas13Crispr,117 cas13Crispr,129 cas13Crispr,142 cas13Crispr,150 cas13Crispr,157 cas13Crispr,169 cas13Crispr,186 cas13Crispr,199 cas13Crispr,208 cas13Crispr,228 cas13Crispr,250 cas13Crispr,259 cas13Crispr,265 cas13Crispr,273 cas13Crispr,286 cas13Crispr,302 cas13Crispr,318 cas13Crispr,329 cas13Crispr,342 cas13Crispr,351 cas13Crispr,359 cas13Crispr,368 cas13Crispr,375 cas13Crispr,389 cas13Crispr,418 cas13Crispr,433 cas13Crispr,469 cd8escape,40 cd8escape,43 cd8escape,46 cd8escape,74 cd8escape,178 cd8escape,183 contacts,30 contacts,59 contacts,71 contacts,81 contacts,84 contacts,87 contacts,101 contacts,121 contacts,129 contacts,134 contacts,141 contacts,146 contacts,156 contacts,186 contacts,196 contacts,218 contacts,235 contacts,238 contacts,242 contacts,250 contacts,262 contacts,279 contacts,287 contacts,296 contacts,303 contacts,317 contacts,346 contacts,361 cpgIslandExt,62 cpgIslandExt,76 cpgIslandExt,82 cpgIslandExt,88 cpgIslandExt,111 cpgIslandExt,142 cpgIslandExt,163 cpgIslandExt,168 cpgIslandExt,172 cpgIslandExt,190 cpgIslandExt,197 cpgIslandExt,201 cpgIslandExt,207 cpgIslandExt,211 cpgIslandExt,215 cpgIslandExt,219 cpgIslandExt,231 cpgIslandExt,259 cpgIslandExt,284 cpgIslandExt,288 cpgIslandExt,291 cpgIslandExt,298 cpgIslandExt,300 cpgIslandExt,310 cpgIslandExt,313 cpgIslandExt,317 cpgIslandExt,324 cpgIslandExt,332 cpgIslandExt,336 cpgIslandExt,342 cpgIslandExt,344 cpgIslandExt,348 cpgIslandExt,355 cpgIslandExt,359 cpgIslandExt,361 cpgIslandExt,372 cpgIslandExt,398 cpgIslandExt,401 cpgIslandExt,407 cpgIslandExt,490 cpgIslandExt,501 cpgIslandExt,517 cpgIslandExt,520 cpgIslandExt,524 cpgIslandExt,528 cpgIslandExt,554 cpgIslandExt,557 cpgIslandExt,567 cpgIslandExtUnmasked,65 cpgIslandExtUnmasked,79 cpgIslandExtUnmasked,85 cpgIslandExtUnmasked,91 cpgIslandExtUnmasked,114 cpgIslandExtUnmasked,145 cpgIslandExtUnmasked,166 cpgIslandExtUnmasked,171 cpgIslandExtUnmasked,175 cpgIslandExtUnmasked,193 cpgIslandExtUnmasked,200 cpgIslandExtUnmasked,204 cpgIslandExtUnmasked,210 cpgIslandExtUnmasked,214 cpgIslandExtUnmasked,218 cpgIslandExtUnmasked,222 cpgIslandExtUnmasked,234 cpgIslandExtUnmasked,262 cpgIslandExtUnmasked,287 cpgIslandExtUnmasked,291 cpgIslandExtUnmasked,294 cpgIslandExtUnmasked,301 cpgIslandExtUnmasked,303 cpgIslandExtUnmasked,313 cpgIslandExtUnmasked,316 cpgIslandExtUnmasked,320 cpgIslandExtUnmasked,327 cpgIslandExtUnmasked,335 cpgIslandExtUnmasked,339 cpgIslandExtUnmasked,345 cpgIslandExtUnmasked,347 cpgIslandExtUnmasked,351 cpgIslandExtUnmasked,358 cpgIslandExtUnmasked,362 cpgIslandExtUnmasked,364 cpgIslandExtUnmasked,375 cpgIslandExtUnmasked,401 cpgIslandExtUnmasked,404 cpgIslandExtUnmasked,410 cpgIslandExtUnmasked,493 cpgIslandExtUnmasked,504 cpgIslandExtUnmasked,520 cpgIslandExtUnmasked,523 cpgIslandExtUnmasked,527 cpgIslandExtUnmasked,531 cpgIslandExtUnmasked,557 cpgIslandExtUnmasked,560 cpgIslandExtUnmasked,570 cpgIslandSuper,62 cpgIslandSuper,76 cpgIslandSuper,82 cpgIslandSuper,88 cpgIslandSuper,111 cpgIslandSuper,142 cpgIslandSuper,163 cpgIslandSuper,168 cpgIslandSuper,172 cpgIslandSuper,190 cpgIslandSuper,197 cpgIslandSuper,201 cpgIslandSuper,207 cpgIslandSuper,211 cpgIslandSuper,215 cpgIslandSuper,219 cpgIslandSuper,231 cpgIslandSuper,259 cpgIslandSuper,284 cpgIslandSuper,288 cpgIslandSuper,291 cpgIslandSuper,298 cpgIslandSuper,300 cpgIslandSuper,310 cpgIslandSuper,313 cpgIslandSuper,317 cpgIslandSuper,324 cpgIslandSuper,332 cpgIslandSuper,336 cpgIslandSuper,342 cpgIslandSuper,344 cpgIslandSuper,348 cpgIslandSuper,355 cpgIslandSuper,359 cpgIslandSuper,361 cpgIslandSuper,372 cpgIslandSuper,398 cpgIslandSuper,401 cpgIslandSuper,407 cpgIslandSuper,490 cpgIslandSuper,501 cpgIslandSuper,517 cpgIslandSuper,520 cpgIslandSuper,524 cpgIslandSuper,528 cpgIslandSuper,554 cpgIslandSuper,557 cpgIslandSuper,567 crisprDet,13 crisprDet,30 crisprDet,35 crisprDet,38 crisprDet,45 crisprDet,64 crisprDet,70 crisprDet,72 crisprDet,97 crisprDet,103 crisprDet,129 crisprDet,132 crisprDet,145 crisprDet,160 epitopes,16 epitopes,41 epitopes,45 epitopes,68 epitopes,87 epitopes,97 epitopes,172 epitopes,179 epitopes,184 epitopes,203 epitopes,214 epitopes,242 epitopes,278 epitopes,282 epitopes,289 epitopes,310 escape,23 escape,43 escape,48 escape,54 escape,57 escape,68 escape,79 escape,86 escape,103 escape,151 escape,175 escape,184 escape,239 escape,249 escape,259 escape,264 escape,284 escape,293 escape,296 escape,301 escape,324 escape,327 escape,337 escape,341 escape,348 escape,379 escape,395 escape,431 escape,439 escape,444 escape,453 escape,462 escape,485 escape,494 escape,498 escape,513 escape,519 escape,522 escape,538 escape,544 escape,554 escape,571 escape,581 escape,612 escape,622 escape,645 escape,648 escape,654 escape,658 escape,666 escape,675 escape,716 escape,759 galaxyEna,26 galaxyEna,31 galaxyEna,77 galaxyEna,120 galaxyEna,125 galaxyEna,138 galaxyEna,241 galaxyEna,247 galaxyEna,253 galaxyEna,261 galaxyEna,278 galaxyEna,304 galaxyEna,307 galaxyEna,316 galaxyEna,325 galaxyEna,328 galaxyEna,330 galaxyEna,335 galaxyEna,341 galaxyEna,345 galaxyEna,351 galaxyEna,354 galaxyEna,370 galaxyEna,378 galaxyEna,384 galaxyEna,391 galaxyEna,425 galaxyEna,431 galaxyEna,437 galaxyEna,444 galaxyEna,484 galaxyEna,492 galaxyEna,500 galaxyEna,504 galaxyEna,509 galaxyEna,513 galaxyEna,517 galaxyEna,524 galaxyEna,528 galaxyEna,557 galaxyEna,563 galaxyEna,566 galaxyEna,571 galaxyEna,579 galaxyEna,583 galaxyEna,594 galaxyEna,600 galaxyEna,608 galaxyEna,612 galaxyEna,616 galaxyEna,627 galaxyEna,630 galaxyEna,639 galaxyEna,649 galaxyEna,652 galaxyEna,657 galaxyEna,692 galaxyEna,699 galaxyEna,727 galaxyEna,746 galaxyEna,750 galaxyEna,754 galaxyEna,775 galaxyEna,780 galaxyEna,820 galaxyEna,824 galaxyEna,835 galaxyEna,884 galaxyEna,915 galaxyEna,919 galaxyEna,922 galaxyEna,943 galaxyEna,950 galaxyEna,972 galaxyEna,978 galaxyEna,986 galaxyEna,1025 galaxyEna,1041 galaxyEna,1048 galaxyEna,1060 galaxyEna,1064 galaxyEna,1074 galaxyEna,1080 galaxyEna,1093 galaxyEna,1101 galaxyEna,1108 galaxyEna,1114 galaxyEna,1120 galaxyEna,1125 galaxyEna,1130 galaxyEna,1133 galaxyEna,1135 galaxyEna,1141 galaxyEna,1153 galaxyEna,1170 galaxyEna,1176 galaxyEna,1183 galaxyEna,1215 galaxyEna,1221 galaxyEna,1225 galaxyEnaQ0Ba-1,22 galaxyEnaQ0Ba-1,27 galaxyEnaQ0Ba-1,73 galaxyEnaQ0Ba-1,116 galaxyEnaQ0Ba-1,121 galaxyEnaQ0Ba-1,134 galaxyEnaQ0Ba-1,237 galaxyEnaQ0Ba-1,243 galaxyEnaQ0Ba-1,249 galaxyEnaQ0Ba-1,257 galaxyEnaQ0Ba-1,274 galaxyEnaQ0Ba-1,300 galaxyEnaQ0Ba-1,303 galaxyEnaQ0Ba-1,312 galaxyEnaQ0Ba-1,321 galaxyEnaQ0Ba-1,324 galaxyEnaQ0Ba-1,326 galaxyEnaQ0Ba-1,331 galaxyEnaQ0Ba-1,337 galaxyEnaQ0Ba-1,341 galaxyEnaQ0Ba-1,347 galaxyEnaQ0Ba-1,350 galaxyEnaQ0Ba-1,366 galaxyEnaQ0Ba-1,374 galaxyEnaQ0Ba-1,380 galaxyEnaQ0Ba-1,387 galaxyEnaQ0Ba-1,421 galaxyEnaQ0Ba-1,427 galaxyEnaQ0Ba-1,433 galaxyEnaQ0Ba-1,440 galaxyEnaQ0Ba-1,480 galaxyEnaQ0Ba-1,488 galaxyEnaQ0Ba-1,496 galaxyEnaQ0Ba-1,500 galaxyEnaQ0Ba-1,505 galaxyEnaQ0Ba-1,509 galaxyEnaQ0Ba-1,513 galaxyEnaQ0Ba-1,520 galaxyEnaQ0Ba-1,524 galaxyEnaQ0Ba-1,553 galaxyEnaQ0Ba-1,559 galaxyEnaQ0Ba-1,562 galaxyEnaQ0Ba-1,567 galaxyEnaQ0Ba-1,575 galaxyEnaQ0Ba-1,579 galaxyEnaQ0Ba-1,590 galaxyEnaQ0Ba-1,596 galaxyEnaQ0Ba-1,604 galaxyEnaQ0Ba-1,608 galaxyEnaQ0Ba-1,612 galaxyEnaQ0Ba-1,623 galaxyEnaQ0Ba-1,626 galaxyEnaQ0Ba-1,635 galaxyEnaQ0Ba-1,645 galaxyEnaQ0Ba-1,648 galaxyEnaQ0Ba-1,653 galaxyEnaQ0Ba-1,688 galaxyEnaQ0Ba-1,695 galaxyEnaQ0Ba-1,723 galaxyEnaQ0Ba-1,742 galaxyEnaQ0Ba-1,746 galaxyEnaQ0Ba-1,750 galaxyEnaQ0Ba-1,771 galaxyEnaQ0Ba-1,776 galaxyEnaQ0Ba-1,816 galaxyEnaQ0Ba-1,820 galaxyEnaQ0Ba-1,831 galaxyEnaQ0Ba-1,880 galaxyEnaQ0Ba-1,911 galaxyEnaQ0Ba-1,915 galaxyEnaQ0Ba-1,918 galaxyEnaQ0Ba-1,939 galaxyEnaQ0Ba-1,946 galaxyEnaQ0Ba-1,968 galaxyEnaQ0Ba-1,974 galaxyEnaQ0Ba-1,982 galaxyEnaQ0Ba-1,1021 galaxyEnaQ0Ba-1,1037 galaxyEnaQ0Ba-1,1044 galaxyEnaQ0Ba-1,1056 galaxyEnaQ0Ba-1,1060 galaxyEnaQ0Ba-1,1070 galaxyEnaQ0Ba-1,1076 galaxyEnaQ0Ba-1,1089 galaxyEnaQ0Ba-1,1097 galaxyEnaQ0Ba-1,1104 galaxyEnaQ0Ba-1,1110 galaxyEnaQ0Ba-1,1116 galaxyEnaQ0Ba-1,1121 galaxyEnaQ0Ba-1,1126 galaxyEnaQ0Ba-1,1129 galaxyEnaQ0Ba-1,1131 galaxyEnaQ0Ba-1,1137 galaxyEnaQ0Ba-1,1149 galaxyEnaQ0Ba-1,1166 galaxyEnaQ0Ba-1,1172 galaxyEnaQ0Ba-1,1179 galaxyEnaQ0Ba-1,1211 galaxyEnaQ0Ba-1,1217 galaxyEnaQ0Ba-1,1221 galaxyEnaQ0Ba-1-1,22 galaxyEnaQ0Ba-1-1,27 galaxyEnaQ0Ba-1-1,73 galaxyEnaQ0Ba-1-1,116 galaxyEnaQ0Ba-1-1,121 galaxyEnaQ0Ba-1-1,134 galaxyEnaQ0Ba-1-1,237 galaxyEnaQ0Ba-1-1,243 galaxyEnaQ0Ba-1-1,249 galaxyEnaQ0Ba-1-1,257 galaxyEnaQ0Ba-1-1,274 galaxyEnaQ0Ba-1-1,300 galaxyEnaQ0Ba-1-1,303 galaxyEnaQ0Ba-1-1,312 galaxyEnaQ0Ba-1-1,321 galaxyEnaQ0Ba-1-1,324 galaxyEnaQ0Ba-1-1,326 galaxyEnaQ0Ba-1-1,331 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galaxyEnaQ3B-1-617-2,575 galaxyEnaQ3B-1-617-2,579 galaxyEnaQ3B-1-617-2,590 galaxyEnaQ3B-1-617-2,596 galaxyEnaQ3B-1-617-2,604 galaxyEnaQ3B-1-617-2,608 galaxyEnaQ3B-1-617-2,612 galaxyEnaQ3B-1-617-2,623 galaxyEnaQ3B-1-617-2,626 galaxyEnaQ3B-1-617-2,635 galaxyEnaQ3B-1-617-2,645 galaxyEnaQ3B-1-617-2,648 galaxyEnaQ3B-1-617-2,653 galaxyEnaQ3B-1-617-2,688 galaxyEnaQ3B-1-617-2,695 galaxyEnaQ3B-1-617-2,723 galaxyEnaQ3B-1-617-2,742 galaxyEnaQ3B-1-617-2,746 galaxyEnaQ3B-1-617-2,750 galaxyEnaQ3B-1-617-2,771 galaxyEnaQ3B-1-617-2,776 galaxyEnaQ3B-1-617-2,816 galaxyEnaQ3B-1-617-2,820 galaxyEnaQ3B-1-617-2,831 galaxyEnaQ3B-1-617-2,880 galaxyEnaQ3B-1-617-2,911 galaxyEnaQ3B-1-617-2,915 galaxyEnaQ3B-1-617-2,918 galaxyEnaQ3B-1-617-2,939 galaxyEnaQ3B-1-617-2,946 galaxyEnaQ3B-1-617-2,968 galaxyEnaQ3B-1-617-2,974 galaxyEnaQ3B-1-617-2,982 galaxyEnaQ3B-1-617-2,1021 galaxyEnaQ3B-1-617-2,1037 galaxyEnaQ3B-1-617-2,1044 galaxyEnaQ3B-1-617-2,1056 galaxyEnaQ3B-1-617-2,1060 galaxyEnaQ3B-1-617-2,1070 galaxyEnaQ3B-1-617-2,1076 galaxyEnaQ3B-1-617-2,1089 galaxyEnaQ3B-1-617-2,1097 galaxyEnaQ3B-1-617-2,1104 galaxyEnaQ3B-1-617-2,1110 galaxyEnaQ3B-1-617-2,1116 galaxyEnaQ3B-1-617-2,1121 galaxyEnaQ3B-1-617-2,1126 galaxyEnaQ3B-1-617-2,1129 galaxyEnaQ3B-1-617-2,1131 galaxyEnaQ3B-1-617-2,1137 galaxyEnaQ3B-1-617-2,1149 galaxyEnaQ3B-1-617-2,1166 galaxyEnaQ3B-1-617-2,1172 galaxyEnaQ3B-1-617-2,1179 galaxyEnaQ3B-1-617-2,1211 galaxyEnaQ3B-1-617-2,1217 galaxyEnaQ3B-1-617-2,1221 gap,11 gap,14 gap,26 gap,38 gap,41 gap,48 gap,53 gap,55 gap,61 gap,64 gap,77 gap,83 gap,89 gap,109 gap,113 gc5BaseBw,12 gc5BaseBw,17 gc5BaseBw,53 gc5BaseBw,57 gc5BaseBw,68 gc5BaseBw,72 genscan,16 genscan,23 genscan,38 genscan,53 genscan,68 genscan,75 genscan,80 genscan,91 genscan,115 genscan,135 genscan,139 genscan,151 genscan,155 genscan,176 gold,12 gold,16 gold,28 gold,40 gold,47 gold,52 gold,54 gold,60 gold,63 gold,72 gold,77 gold,86 gold,103 gold,108 gold,114 gold,128 gold,133 gordon2,36 gordon2,44 gordon2,86 gordon2,89 gordon2,92 gordon2,100 gordon2,103 gordon2,106 gordon2,111 gordon2,135 gordon2,143 gordon2,175 gordon2,190 gordon2,196 gordon2,212 gordon2,236 icshape,39 icshape,44 icshape,47 icshape,59 icshape,65 icshape,71 icshape,85 icshape,97 icshape,104 icshape,108 icshape,111 icshape,144 icshape,213 iedb,39 iedb,60 iedb,83 iedb,115 kimIvtCov,21 kimIvtCov,56 kimIvtCov,76 kimIvtCov,154 kimIvtCov,160 kimIvtCov,185 kimNp,22 kimNp,47 kimNp,50 kimNp,53 kimNp,56 kimNp,79 kimNp,95 kimNp,98 kimNp,101 kimNp,117 kimRnaMod,30 kimRnaMod,52 kimRnaMod,55 kimRnaMod,59 kimRnaMod,79 kimRnaMod,82 kimRnaMod,91 kimRnaMod,101 kimRnaMod,113 kimRnaMod,121 kimRnaMod,130 kimRnaMod,137 kimRnaMod,151 kimRnaMod,180 kimRnaMod,195 kimRnaMod,242 kimTranscripts,27 kimTranscripts,47 kimTranscripts,70 kimTranscripts,94 kimTranscripts,98 kimTranscripts,104 kimTranscripts,118 kimTranscripts,161 kimTranscripts,164 kimTranscripts,171 kimTranscripts,174 kimTranscripts,206 kimTranscripts,220 kimTranscripts,223 kimTranscripts,263 kimTranscripts,297 kimTranscripts,326 kimTranscripts,330 kimTranscripts,338 kimTranscripts,347 kimTranscripts,354 kimTranscripts,368 kimTranscripts,397 kimTranscripts,412 kimTranscripts,472 mccoy,16 mccoy,36 mccoy,41 mccoy,47 mccoy,50 mccoy,61 mccoy,72 mccoy,79 mccoy,96 mccoy,144 mccoy,168 mccoy,177 mccoy,232 mccoy,242 mccoy,252 mccoy,257 mccoy,277 mccoy,286 mccoy,289 mccoy,294 mccoy,317 mccoy,320 mccoy,330 mccoy,334 mccoy,341 mccoy,372 mccoy,388 mccoy,424 mccoy,432 mccoy,437 mccoy,446 mccoy,455 mccoy,478 mccoy,487 mccoy,491 mccoy,506 mccoy,512 mccoy,515 mccoy,531 mccoy,537 mccoy,547 mccoy,564 mccoy,574 mccoy,605 mccoy,615 mccoy,638 mccoy,641 mccoy,647 mccoy,651 mccoy,659 mccoy,668 mccoy,709 mccoy,752 microdel,19 microdel,23 microdel,90 microdel,103 microdel,113 microdel,129 microdel,139 microdel,147 microdel,155 microdel,167 microdel,192 microdel,199 microdel,202 microdel,219 microdel,227 multiz7way,28 multiz7way,39 multiz7way,50 multiz7way,60 multiz7way,63 multiz7way,71 multiz7way,80 multiz7way,95 multiz7way,107 multiz7way,133 multiz7way,190 multiz7way,212 multiz7way,245 multiz7way,250 multiz7way,257 multiz7way,262 multiz7way,273 multiz7way,278 multiz7way,282 multiz7way,294 multiz7way,302 multiz7way,315 multiz7way,328 multiz7way,331 multiz7way,334 multiz7way,341 multiz7way,346 multiz7way,350 multiz7way,355 multiz7way,364 multiz7way,374 multiz7way,376 multiz7way,379 multiz7way,384 multiz7way,389 multiz7way,425 multiz7way,430 multiz7way,434 multiz7way,440 multiz7way,443 multiz7way,449 multiz7way,455 multiz7way,461 multiz7way,474 multiz7way,477 multiz7way,481 multiz7way,495 multiz7way,500 multiz7way,521 multiz7way,554 multiz7way,560 multiz7way,566 multiz7way,574 multiz7way,658 multiz7way,667 multiz7way,681 multiz7way,725 multiz7way,731 multiz7way,740 multiz7way,756 multiz7way,761 multiz7way,767 multiz7way,770 multiz7way,782 multiz7way,792 multiz7way,819 multiz7way,840 multiz7way,869 multiz7way,962 multiz7way,1109 multiz7way,1144 multiz7way,1194 ncbiGeneBGP,12 ncbiGeneBGP,17 ncbiGeneBGP,29 ncbiGeneBGP,41 ncbiGeneBGP,49 ncbiGeneBGP,53 ncbiGeneBGP,59 ncbiGeneBGP,73 ncbiGeneBGP,92 ncbiGeneBGP,118 ncbiGeneBGP,188 ncbiProducts,14 ncbiProducts,20 ncbiProducts,32 ncbiProducts,44 ncbiProducts,52 ncbiProducts,57 ncbiProducts,65 ncbiProducts,69 ncbiProducts,75 ncbiProducts,89 ncbiProducts,108 ncbiProducts,134 ncbiProducts,204 nextstrainClade,23 nextstrainClade,36 nextstrainClade,45 nextstrainClade,53 nextstrainClade,73 nextstrainClade,80 nextstrainClade,98 nextstrainClade,145 nextstrainClade,148 nextstrainClade,182 nextstrainClade,193 nextstrainClade,200 nextstrainClade,204 nextstrainClade,207 nextstrainFreq,21 nextstrainFreq,36 nextstrainFreq,45 nextstrainFreq,70 nextstrainFreq,82 nextstrainFreq,97 nextstrainFreq,100 nextstrainFreq,102 nextstrainFreq,112 nextstrainFreq,116 nextstrainFreq,121 nextstrainFreq,128 nextstrainFreq,145 nextstrainFreq,174 nextstrainFreq,186 nextstrainFreq,193 nextstrainFreq,197 nextstrainFreq,200 nextstrainFreq,233 nextstrainFreq,271 nextstrainFreq,291 nextstrainFreq,304 nextstrainFreq,309 nextstrainFreq,346 nextstrainGene,21 nextstrainGene,34 nextstrainGene,41 nextstrainGene,58 nextstrainGene,77 nextstrainGene,103 nextstrainGene,132 nextstrainGene,143 nextstrainGene,150 nextstrainGene,154 nextstrainGene,157 nextstrainParsimony,24 nextstrainParsimony,37 nextstrainParsimony,40 nextstrainParsimony,53 nextstrainParsimony,62 nextstrainParsimony,87 nextstrainParsimony,106 nextstrainParsimony,115 nextstrainParsimony,121 nextstrainParsimony,126 nextstrainParsimony,129 nextstrainParsimony,150 nextstrainParsimony,153 nextstrainParsimony,156 nextstrainParsimony,165 nextstrainParsimony,188 nextstrainParsimony,191 nextstrainParsimony,201 nextstrainParsimony,204 nextstrainParsimony,223 nextstrainParsimony,229 nextstrainParsimony,248 nextstrainParsimony,263 nextstrainParsimony,266 nextstrainParsimony,268 nextstrainParsimony,273 nextstrainParsimony,281 nextstrainParsimony,302 nextstrainParsimony,331 nextstrainParsimony,344 nextstrainParsimony,355 nextstrainParsimony,362 nextstrainParsimony,366 nextstrainParsimony,369 nextstrainParsimony,388 nextstrainParsimony,391 nextstrainParsimony,411 nextstrainParsimony,423 nextstrainSamples,21 nextstrainSamples,34 nextstrainSamples,37 nextstrainSamples,49 nextstrainSamples,56 nextstrainSamples,73 nextstrainSamples,94 nextstrainSamples,110 nextstrainSamples,114 nextstrainSamples,120 nextstrainSamples,128 nextstrainSamples,147 nextstrainSamples,155 nextstrainSamples,159 nextstrainSamples,175 nextstrainSamples,185 nextstrainSamples,203 nextstrainSamples,207 nextstrainSamples,231 nextstrainSamples,326 nextstrainSamples,361 nextstrainSamples,366 nextstrainSamples,372 nextstrainSamples,378 nextstrainSamples,398 nextstrainSamples,405 nextstrainSamples,411 nextstrainSamples,420 nextstrainSamples,432 nextstrainSamples,453 nextstrainSamples,457 nextstrainSamples,461 nextstrainSamples,469 nextstrainSamples,473 nextstrainSamples,480 nextstrainSamples,484 nextstrainSamples,488 nextstrainSamples,492 nextstrainSamples,503 nextstrainSamples,511 nextstrainSamples,514 nextstrainSamples,522 nextstrainSamples,533 nextstrainSamples,547 nextstrainSamples,550 nextstrainSamples,558 nextstrainSamples,585 nextstrainSamples,593 nextstrainSamples,629 nextstrainSamples,649 nextstrainSamples,654 nextstrainSamples,677 nextstrainSamples,683 nextstrainSamples,692 nextstrainSamples,700 nextstrainSamples,715 nextstrainSamples,718 nextstrainSamples,767 nextstrainSamples,783 nextstrainSamples,799 nextstrainSamples,823 nextstrainSamples,843 nextstrainSamples,888 nextstrainSamples,900 nextstrainSamples,923 nextstrainSamples,943 nextstrainSamples,956 nextstrainSamples,979 nextstrainSamples,982 nextstrainSamples,993 pbm,37 pbm,56 pbm,67 pbm,72 pbm,76 pbm,97 pbm,105 pbm,112 pbm,120 pbm,141 pbm,147 pbm,160 pbm,177 pbm,183 pbm,197 pbm,201 pbm,224 pbm,260 pbm,269 pbm,280 pbm,292 pbm,300 pbm,309 pbm,316 pbm,330 pbm,359 pbm,374 pbmShanghai,40 pbmShanghai,56 pbmShanghai,67 pbmShanghai,80 pbmShanghai,93 pbmShanghai,129 pbmShanghai,139 pbmShanghai,154 pbmShanghai,162 pbmShanghai,169 pbmShanghai,177 pbmShanghai,195 pbmShanghai,199 pbmShanghai,218 pbmShanghai,224 pbmShanghai,227 pbmShanghai,237 pbmShanghai,243 pbmShanghai,250 pbmShanghai,267 pbmShanghai,271 pbmShanghai,276 pbmShanghai,282 pbmShanghai,287 pbmShanghai,295 pbmShanghai,297 pbmShanghai,301 pbmShanghai,311 pbmShanghai,329 pbmShanghai,338 pbmShanghai,347 pbmShanghai,350 pbmShanghai,362 pbmShanghai,371 pbmShanghai,397 pbmShanghai,409 pbmShanghai,417 pbmShanghai,426 pbmShanghai,433 pbmShanghai,447 pdb,25 pdb,30 pdb,37 pdb,52 pdb,71 pdb,85 pdb,91 pdb,97 pdb,106 pdb,127 pdb,149 phyloGenes,22 phyloGenes,50 phyloGenes,59 phyloGenes,68 phyloGenes,72 phyloGenes,77 phyloGenes,146 phyloGenes,163 phyloGenes,204 phyloGenes,274 phyloGenes,279 phyloGenes,327 phyloGenes,335 phyloGenes,344 phyloGenes,351 phyloGenes,365 phyloGenes,394 phyloGenes,409 phyloGenes,450 phyloGenes,478 phyloGenes,574 pond,39 pond,61 pond,70 pond,192 pond,197 pond,206 pond,218 pond,226 poranHla1,38 poranHla1,53 poranHla1,99 poranHla1,118 poranHla1,120 poranHla1,123 poranHla1,133 poranHla1,140 poranHla1,148 poranHla1,157 poranHla1,164 poranHla1,178 poranHla1,207 poranHla1,222 poranHla1,286 poranHla2,38 poranHla2,53 poranHla2,99 poranHla2,118 poranHla2,120 poranHla2,123 poranHla2,133 poranHla2,140 poranHla2,148 poranHla2,157 poranHla2,164 poranHla2,178 poranHla2,207 poranHla2,222 poranHla2,286 potPathoIndel,28 potPathoIndel,31 potPathoIndel,54 potPathoIndel,59 potPathoIndel,64 potPathoIndel,73 potPathoIndel,83 potPathoIndel,92 potPathoIndel,114 potPathoIndel,117 potPathoIndel,146 potPathoIndel,166 potPathoIndel,169 potPathoIndel,173 potPathoIndel,179 potPathoIndel,184 potPathoIndel,232 primers,15 primers,25 primers,28 primers,37 primers,40 primers,44 primers,47 primers,68 primers,88 primers,92 primers,110 primers,113 primers,117 primers,147 primers,231 primers,234 primers,242 primers,256 primers,276 primers,281 primers,286 primers,319 primers,330 primers,337 primers,341 primers,344 primers,389 problematicSites,61 problematicSites,70 problematicSites,90 problematicSites,109 problematicSites,171 problematicSites,176 problematicSites,192 problematicSites,218 problematicSites,222 problematicSites,232 problematicSites,247 problematicSites,299 problematicSites,320 problematicSites,327 problematicSites,355 problematicSites,448 problematicSites,457 problematicSites,460 problematicSites,469 problematicSites,474 problematicSites,479 problematicSites,484 problematicSites,501 problematicSites,513 problematicSites,520 problematicSites,524 problematicSites,527 publicAnnots,46 publicAnnots,50 publicAnnots,53 publicAnnots,87 pyle,8 pyle,28 pyle,33 pyle,36 pyle,87 pyle,111 pyle,132 pyle,142 pyle,188 pyle,216 pyle,237 pyle,249 pyle,261 pyle,294 pyle,318 pyle,327 rapid,19 rapid,22 rapid,33 rapid,38 rapid,75 rapid,84 rapid,94 rapid,104 rapid,170 rapid,177 rapid,195 rapid,207 rapid,213 rapid,220 rapid,228 rapid,237 rapid,244 rapid,258 rapid,287 rapid,302 rappuoli,23 rappuoli,43 rappuoli,48 rappuoli,54 rappuoli,57 rappuoli,68 rappuoli,79 rappuoli,86 rappuoli,103 rappuoli,151 rappuoli,175 rappuoli,184 rappuoli,239 rappuoli,249 rappuoli,259 rappuoli,264 rappuoli,284 rappuoli,293 rappuoli,296 rappuoli,301 rappuoli,324 rappuoli,327 rappuoli,337 rappuoli,341 rappuoli,348 rappuoli,379 rappuoli,395 rappuoli,431 rappuoli,439 rappuoli,444 rappuoli,453 rappuoli,462 rappuoli,485 rappuoli,494 rappuoli,498 rappuoli,513 rappuoli,519 rappuoli,522 rappuoli,538 rappuoli,544 rappuoli,554 rappuoli,571 rappuoli,581 rappuoli,612 rappuoli,622 rappuoli,645 rappuoli,648 rappuoli,654 rappuoli,658 rappuoli,666 rappuoli,675 rappuoli,716 rappuoli,759 recomb,21 recomb,40 recomb,52 recomb,61 recomb,68 recomb,104 recomb,121 recomb,140 recomb,145 recomb,191 recomb,210 recomb,220 recomb,227 recomb,231 recomb,245 recomb,251 recomb,262 recomb,276 recomb,287 recomb,294 recomb,298 recomb,301 recomb,319 recomb,348 resist,46 resist,54 resist,70 resist,77 resist,81 resist,86 resist,93 resist,97 resist,103 resist,117 resist,121 resist,146 resist,150 resistPred,47 resistPred,51 resistPred,57 resistPred,93 resistPred,100 resistPred,114 resistPred,120 resistPred,123 resistPred,126 resistPred,147 resistPred,151 resistPred,158 resistPred,167 resistPred,174 resistPred,181 resistPred,185 resistPred,189 resistPred,195 resistPred,209 resistPred,213 resistPred,238 resistPred,242 resistPred,249 resistPred,253 resistPred,257 resistPred,263 resistPred,269 rfam,9 rfam,15 rfam,20 rfam,24 rfam,40 rfam,45 rfam,50 rfam,56 rfam,64 rfam,73 rfam,78 rfam,86 rfam,89 rfam,100 rfam,104 rfam,124 rfam,143 rfam,147 rfam,152 rfam,160 rfam,166 rnaStructRangan,15 rnaStructRangan,73 rnaStructRangan,95 rosettaMhc,17 rosettaMhc,26 rosettaMhc,40 rosettaMhc,69 rosettaMhc,101 rosettaMhc,149 rosettaMhc,162 rosettaMhc,184 rosettaMhc,194 rosettaMhc,199 rosettaMhc,269 rosettaMhc,312 rosettaMhc,331 rosettaMhc,338 rosettaMhc,348 rosettaMhc,358 rosettaMhc,385 sarsCov2Phylo,38 sarsCov2Phylo,71 sarsCov2Phylo,85 sarsCov2Phylo,89 sarsCov2Phylo,92 sarsCov2Phylo,99 sarsCov2Phylo,112 sarsCov2Phylo,127 sarsCov2Phylo,331 sarsCov2Phylo,344 sarsCov2Phylo,365 sarsCov2Phylo,370 sarsCov2Phylo,376 sarsCov2Phylo,382 sarsCov2Phylo,402 sarsCov2Phylo,409 sarsCov2Phylo,412 sarsCov2Phylo,422 sarsCov2Phylo,439 sarsCov2Phylo,456 sarsCov2Phylo,468 sarsCov2Phylo,487 sarsCov2Phylo,494 sarsCov2Phylo,499 sarsCov2Phylo,503 sarsCov2Phylo,510 sarsCov2Phylo,514 sarsCov2Phylo,518 sarsCov2Phylo,532 sarsCov2Phylo,539 sarsCov2Phylo,549 sarsCov2Phylo,553 sarsCov2Phylo,556 sarsCov2Phylo,562 sarsCov2Phylo,569 sarsCov2Phylo,580 sarsCov2Phylo,586 sarsCov2Phylo,592 sarsCov2Phylo,619 sarsCov2Phylo,651 sarsCov2Phylo,666 sarsCov2Phylo,681 sarsCov2Phylo,706 sarsCov2Phylo,718 sarsCov2Phylo,725 sarsCov2Phylo,729 sarsCov2Phylo,734 sarsCov2Phylo,751 sarsCov2Phylo,768 sarsCov2Phylo,778 sarsCov2Phylo,814 sarsCov2Phylo,824 sarsCov2Phylo,836 sarsCov2Phylo,865 sarsCov2Phylo,873 sarsCov2Phylo,893 sarsCov2Phylo,906 sarsCov2Phylo,1003 sarsCov2PhyloPub,36 sarsCov2PhyloPub,46 sarsCov2PhyloPub,85 sarsCov2PhyloPub,91 sarsCov2PhyloPub,98 sarsCov2PhyloPub,102 sarsCov2PhyloPub,105 sarsCov2PhyloPub,112 sarsCov2PhyloPub,125 sarsCov2PhyloPub,136 sarsCov2PhyloPub,146 sarsCov2PhyloPub,342 sarsCov2PhyloPub,355 sarsCov2PhyloPub,394 sarsCov2PhyloPub,399 sarsCov2PhyloPub,405 sarsCov2PhyloPub,411 sarsCov2PhyloPub,431 sarsCov2PhyloPub,438 sarsCov2PhyloPub,441 sarsCov2PhyloPub,451 sarsCov2PhyloPub,468 sarsCov2PhyloPub,485 sarsCov2PhyloPub,497 sarsCov2PhyloPub,516 sarsCov2PhyloPub,523 sarsCov2PhyloPub,528 sarsCov2PhyloPub,532 sarsCov2PhyloPub,539 sarsCov2PhyloPub,543 sarsCov2PhyloPub,557 sarsCov2PhyloPub,564 sarsCov2PhyloPub,574 sarsCov2PhyloPub,578 sarsCov2PhyloPub,581 sarsCov2PhyloPub,587 sarsCov2PhyloPub,594 sarsCov2PhyloPub,607 sarsCov2PhyloPub,613 sarsCov2PhyloPub,619 sarsCov2PhyloPub,646 sarsCov2PhyloPub,675 sarsCov2PhyloPub,690 sarsCov2PhyloPub,705 sarsCov2PhyloPub,714 sarsCov2PhyloPub,749 sarsCov2PhyloPub,776 sarsCov2PhyloPub,779 sarsCov2PhyloPub,782 sarsCov2PhyloPub,787 sarsCov2PhyloPub,860 sarsCov2PhyloPub,867 sarsCov2PhyloPub,875 sarsCov2PhyloPub,879 sarsCov2PhyloPub,889 sarsCov2PhyloPub,896 sarsCov2PhyloPub,907 sarsCov2PhyloPub,919 sarsCov2PhyloPub,924 sarsCov2PhyloPub,927 sarsCov2PhyloPub,931 sarsCov2PhyloPub,941 sarsCov2PhyloPub,971 sarsCov2PhyloPub,979 sarsCov2PhyloPub,999 sarsCov2PhyloPub,1012 sarsCov2PhyloPub,1032 sarsCov2PhyloPub,1123 sarsCov2PhyloPub,1247 simpleRepeat,60 spikeMuts,15 spikeMuts,21 spikeMuts,98 spikeMuts,104 spikeMuts,111 spikeMuts,180 spikeMuts,214 spikeMuts,236 spikeMuts,242 spikeMuts,245 spikeMuts,250 spikeMuts,253 spikeMuts,264 spikeMuts,268 spikeMuts,278 spikeMuts,283 spikeMuts,295 spikeMuts,303 spikeMuts,312 spikeMuts,319 spikeMuts,375 strainCons119way,53 strainCons119way,98 strainCons119way,124 strainCons119way,132 strainCons119way,143 strainCons119way,180 strainCons119way,192 strainCons119way,218 strainCons119way,226 strainCons119way,235 strainCons119way,244 strainCons119way,271 strainCons119way,325 strainCons119way,355 strainCons119way,359 strainCons119way,371 strainCons119way,401 strainCons119way,404 strainCons119way,414 strainCons119way,444 strainCons119way,456 strainCons119way,482 strainCons119way,539 strainCons119way,561 strainCons119way,594 strainCons119way,599 strainCons119way,606 strainCons119way,611 strainCons119way,622 strainCons119way,629 strainCons119way,635 strainCons119way,645 strainCons119way,652 strainCons119way,664 strainCons119way,671 strainCons119way,674 strainCons119way,677 strainCons119way,683 strainCons119way,688 strainCons119way,692 strainCons119way,697 strainCons119way,706 strainCons119way,716 strainCons119way,718 strainCons119way,721 strainCons119way,726 strainCons119way,731 strainCons119way,761 strainCons119way,775 strainCons119way,780 strainCons119way,784 strainCons119way,790 strainCons119way,793 strainCons119way,799 strainCons119way,805 strainCons119way,811 strainCons119way,824 strainCons119way,827 strainCons119way,831 strainCons119way,845 strainCons119way,850 strainCons119way,871 strainCons119way,904 strainCons119way,910 strainCons119way,916 strainCons119way,924 strainCons119way,1007 strainCons119way,1016 strainCons119way,1030 strainCons119way,1485 strainCons119way,1491 strainCons119way,1500 strainCons119way,1516 strainCons119way,1521 strainCons119way,1527 strainCons119way,1530 strainCons119way,1654 strainCons119way,1664 strainCons119way,1685 strainCons119way,1697 strainCons119way,1707 strainCons119way,1717 strainCons119way,1721 strainCons119way,1739 strainCons119way,1743 strainCons119way,1749 strainCons119way,1766 strainCons119way,1770 strainCons119way,1778 strainCons119way,1786 strainCons119way,1804 strainCons119way,1816 strainCons119way,1825 strainCons119way,1854 strainCons119way,1861 strainCons119way,1865 strainCons119way,1872 strainCons119way,1876 strainCons119way,1881 strainCons119way,1887 strainCons119way,1896 strainCons119way,1910 strainCons119way,1919 strainCons119way,1968 strainCons119way,1981 strainCons119way,2021 strainCons119way,2031 strainCons119way,2037 strainCons119way,2066 strainCons119way,2075 strainCons119way,2078 strainCons119way,2084 strainCons119way,2094 strainCons119way,2098 strainCons119way,2113 strainCons119way,2121 strainCons119way,2124 strainCons119way,2141 strainCons119way,2150 strainCons119way,2156 strainCons119way,2164 strainCons119way,2172 strainCons119way,2177 strainCons119way,2180 strainCons119way,2197 strainCons119way,2218 strainCons119way,2247 strainCons119way,2340 strainCons119way,2487 strainCons119way,2522 strainCons119way,2572 strainCons44way,50 strainCons44way,72 strainCons44way,80 strainCons44way,91 strainCons44way,128 strainCons44way,140 strainCons44way,166 strainCons44way,174 strainCons44way,183 strainCons44way,192 strainCons44way,219 strainCons44way,273 strainCons44way,303 strainCons44way,307 strainCons44way,319 strainCons44way,349 strainCons44way,352 strainCons44way,362 strainCons44way,392 strainCons44way,404 strainCons44way,430 strainCons44way,487 strainCons44way,509 strainCons44way,542 strainCons44way,547 strainCons44way,554 strainCons44way,559 strainCons44way,570 strainCons44way,577 strainCons44way,583 strainCons44way,593 strainCons44way,600 strainCons44way,612 strainCons44way,619 strainCons44way,622 strainCons44way,625 strainCons44way,631 strainCons44way,636 strainCons44way,640 strainCons44way,645 strainCons44way,654 strainCons44way,664 strainCons44way,666 strainCons44way,669 strainCons44way,674 strainCons44way,679 strainCons44way,709 strainCons44way,723 strainCons44way,728 strainCons44way,732 strainCons44way,738 strainCons44way,741 strainCons44way,747 strainCons44way,753 strainCons44way,759 strainCons44way,772 strainCons44way,775 strainCons44way,779 strainCons44way,793 strainCons44way,798 strainCons44way,819 strainCons44way,852 strainCons44way,858 strainCons44way,864 strainCons44way,872 strainCons44way,955 strainCons44way,964 strainCons44way,978 strainCons44way,1155 strainCons44way,1161 strainCons44way,1170 strainCons44way,1186 strainCons44way,1191 strainCons44way,1197 strainCons44way,1200 strainCons44way,1249 strainCons44way,1259 strainCons44way,1280 strainCons44way,1292 strainCons44way,1302 strainCons44way,1312 strainCons44way,1316 strainCons44way,1334 strainCons44way,1338 strainCons44way,1344 strainCons44way,1361 strainCons44way,1365 strainCons44way,1373 strainCons44way,1381 strainCons44way,1399 strainCons44way,1411 strainCons44way,1420 strainCons44way,1449 strainCons44way,1456 strainCons44way,1460 strainCons44way,1467 strainCons44way,1471 strainCons44way,1476 strainCons44way,1482 strainCons44way,1491 strainCons44way,1505 strainCons44way,1514 strainCons44way,1563 strainCons44way,1576 strainCons44way,1616 strainCons44way,1626 strainCons44way,1632 strainCons44way,1661 strainCons44way,1670 strainCons44way,1673 strainCons44way,1679 strainCons44way,1689 strainCons44way,1693 strainCons44way,1708 strainCons44way,1716 strainCons44way,1719 strainCons44way,1736 strainCons44way,1745 strainCons44way,1751 strainCons44way,1759 strainCons44way,1767 strainCons44way,1772 strainCons44way,1775 strainCons44way,1792 strainCons44way,1813 strainCons44way,1842 strainCons44way,1935 strainCons44way,2082 strainCons44way,2117 strainCons44way,2167 strainCons44way,2254 strainCons44way,2266 swift,14 swift,17 swift,47 swift,65 swift,107 swift,114 swift,149 swift,157 swift,166 swift,173 swift,187 swift,216 swift,231 targets,33 targets,77 targets,80 targets,118 targets,125 targets,130 targets,134 targets,137 targets,140 targets,143 targets,147 targets,150 targets,154 targets,161 targets,167 targets,174 targets,190 targets,195 targets,212 targets,219 targets,223 transcriptome,19 transcriptome,39 transcriptome,62 transcriptome,86 transcriptome,90 transcriptome,96 transcriptome,110 transcriptome,133 transcriptome,144 transcriptome,178 transcriptome,182 transcriptome,185 transcriptome,197 transcriptome,213 transcriptome,216 transcriptome,227 transcriptome,229 transcriptome,244 transcriptome,252 transcriptome,255 transcriptome,279 transcriptome,290 transcriptome,293 transcriptome,300 transcriptome,308 transcriptome,336 transcriptome,344 transcriptome,353 transcriptome,360 transcriptome,374 transcriptome,403 transcriptome,418 transcriptome,478 treangen,42 treangen,64 treangen,106 treangen,133 treangen,140 treangen,151 treangen,164 treangen,175 treangen,200 treangen,219 treangen,233 treangen,245 treangen,256 treangen,265 treangen,276 ucscToINSDC,26 ucscToINSDC,33 ucscToINSDC,38 ucscToINSDC,43 ucscToRefSeq,21 ucscToRefSeq,27 ucscToRefSeq,32 ucscToRefSeq,37 unipCov2AliSwissprot,22 unipCov2AliSwissprot,33 unipCov2AliSwissprot,41 unipCov2AliSwissprot,49 unipCov2AliSwissprot,54 unipCov2AliSwissprot,57 unipCov2AliSwissprot,68 unipCov2AliSwissprot,89 unipCov2AliSwissprot,111 unipCov2AliSwissprot,119 unipCov2AliSwissprot,131 unipCov2AliSwissprot,138 unipCov2AliSwissprot,142 unipCov2AliSwissprot,146 unipCov2AliSwissprot,187 unipCov2AliSwissprot,191 unipCov2AliSwissprot,197 unipCov2AliSwissprot,200 unipCov2AliSwissprot,203 unipCov2AliSwissprot,212 unipCov2AliSwissprot,222 unipCov2AliSwissprot,236 unipCov2AliSwissprot,247 unipCov2AliSwissprot,262 unipCov2AliSwissprot,270 unipCov2AliSwissprot,274 unipCov2AliSwissprot,280 unipCov2AliSwissprot,294 unipCov2AliSwissprot,297 unipCov2AliSwissprot,304 unipCov2AliSwissprot,324 unipCov2AliSwissprot,347 unipCov2AliSwissprot,422 unipCov2AliSwissprot,444 unipCov2AliSwissprot,448 unipCov2AliSwissprot,480 unipCov2AliSwissprot,485 unipCov2Chain,21 unipCov2Chain,29 unipCov2Chain,38 unipCov2Chain,42 unipCov2Chain,70 unipCov2Chain,92 unipCov2Chain,118 unipCov2Chain,144 unipCov2Chain,155 unipCov2Chain,166 unipCov2Chain,238 unipCov2Chain,274 unipCov2Chain,296 unipCov2Chain,304 unipCov2Chain,321 unipCov2Chain,337 unipCov2Chain,344 unipCov2Chain,348 unipCov2Chain,352 unipCov2Chain,356 unipCov2Chain,371 unipCov2Chain,380 unipCov2Chain,440 unipCov2Chain,444 unipCov2Chain,450 unipCov2Chain,453 unipCov2Chain,456 unipCov2Chain,465 unipCov2Chain,477 unipCov2Chain,492 unipCov2Chain,500 unipCov2Chain,504 unipCov2Chain,510 unipCov2Chain,524 unipCov2Chain,527 unipCov2Chain,534 unipCov2Chain,554 unipCov2Chain,577 unipCov2Chain,652 unipCov2Chain,673 unipCov2Chain,677 unipCov2Chain,709 unipCov2Chain,714 unipCov2DisulfBond,17 unipCov2DisulfBond,25 unipCov2DisulfBond,34 unipCov2DisulfBond,38 unipCov2DisulfBond,66 unipCov2DisulfBond,88 unipCov2DisulfBond,114 unipCov2DisulfBond,140 unipCov2DisulfBond,151 unipCov2DisulfBond,162 unipCov2DisulfBond,234 unipCov2DisulfBond,270 unipCov2DisulfBond,292 unipCov2DisulfBond,300 unipCov2DisulfBond,317 unipCov2DisulfBond,333 unipCov2DisulfBond,340 unipCov2DisulfBond,344 unipCov2DisulfBond,348 unipCov2DisulfBond,352 unipCov2DisulfBond,367 unipCov2DisulfBond,376 unipCov2DisulfBond,436 unipCov2DisulfBond,440 unipCov2DisulfBond,446 unipCov2DisulfBond,449 unipCov2DisulfBond,452 unipCov2DisulfBond,461 unipCov2DisulfBond,473 unipCov2DisulfBond,488 unipCov2DisulfBond,496 unipCov2DisulfBond,500 unipCov2DisulfBond,506 unipCov2DisulfBond,520 unipCov2DisulfBond,523 unipCov2DisulfBond,530 unipCov2DisulfBond,550 unipCov2DisulfBond,573 unipCov2DisulfBond,648 unipCov2DisulfBond,669 unipCov2DisulfBond,673 unipCov2DisulfBond,705 unipCov2DisulfBond,710 unipCov2Domain,16 unipCov2Domain,24 unipCov2Domain,33 unipCov2Domain,37 unipCov2Domain,65 unipCov2Domain,87 unipCov2Domain,113 unipCov2Domain,139 unipCov2Domain,150 unipCov2Domain,161 unipCov2Domain,233 unipCov2Domain,269 unipCov2Domain,291 unipCov2Domain,299 unipCov2Domain,316 unipCov2Domain,332 unipCov2Domain,339 unipCov2Domain,343 unipCov2Domain,347 unipCov2Domain,351 unipCov2Domain,366 unipCov2Domain,375 unipCov2Domain,435 unipCov2Domain,439 unipCov2Domain,445 unipCov2Domain,448 unipCov2Domain,451 unipCov2Domain,460 unipCov2Domain,472 unipCov2Domain,487 unipCov2Domain,495 unipCov2Domain,499 unipCov2Domain,505 unipCov2Domain,519 unipCov2Domain,522 unipCov2Domain,529 unipCov2Domain,549 unipCov2Domain,572 unipCov2Domain,647 unipCov2Domain,668 unipCov2Domain,672 unipCov2Domain,704 unipCov2Domain,709 unipCov2Interest,23 unipCov2Interest,31 unipCov2Interest,40 unipCov2Interest,63 unipCov2Interest,74 unipCov2Interest,116 unipCov2Interest,120 unipCov2Interest,126 unipCov2Interest,129 unipCov2Interest,132 unipCov2Interest,141 unipCov2Interest,153 unipCov2Interest,168 unipCov2Interest,176 unipCov2Interest,180 unipCov2Interest,186 unipCov2Interest,200 unipCov2Interest,203 unipCov2Interest,210 unipCov2Interest,230 unipCov2Interest,253 unipCov2Interest,305 unipCov2Interest,327 unipCov2Interest,331 unipCov2Interest,363 unipCov2Interest,368 unipCov2LocCytopl,16 unipCov2LocCytopl,24 unipCov2LocCytopl,33 unipCov2LocCytopl,37 unipCov2LocCytopl,65 unipCov2LocCytopl,87 unipCov2LocCytopl,113 unipCov2LocCytopl,139 unipCov2LocCytopl,150 unipCov2LocCytopl,161 unipCov2LocCytopl,233 unipCov2LocCytopl,269 unipCov2LocCytopl,291 unipCov2LocCytopl,299 unipCov2LocCytopl,316 unipCov2LocCytopl,332 unipCov2LocCytopl,339 unipCov2LocCytopl,343 unipCov2LocCytopl,347 unipCov2LocCytopl,351 unipCov2LocCytopl,366 unipCov2LocCytopl,375 unipCov2LocCytopl,435 unipCov2LocCytopl,439 unipCov2LocCytopl,445 unipCov2LocCytopl,448 unipCov2LocCytopl,451 unipCov2LocCytopl,460 unipCov2LocCytopl,472 unipCov2LocCytopl,487 unipCov2LocCytopl,495 unipCov2LocCytopl,499 unipCov2LocCytopl,505 unipCov2LocCytopl,519 unipCov2LocCytopl,522 unipCov2LocCytopl,529 unipCov2LocCytopl,549 unipCov2LocCytopl,572 unipCov2LocCytopl,647 unipCov2LocCytopl,668 unipCov2LocCytopl,672 unipCov2LocCytopl,704 unipCov2LocCytopl,709 unipCov2LocExtra,16 unipCov2LocExtra,24 unipCov2LocExtra,33 unipCov2LocExtra,37 unipCov2LocExtra,65 unipCov2LocExtra,87 unipCov2LocExtra,113 unipCov2LocExtra,139 unipCov2LocExtra,150 unipCov2LocExtra,161 unipCov2LocExtra,233 unipCov2LocExtra,269 unipCov2LocExtra,291 unipCov2LocExtra,299 unipCov2LocExtra,316 unipCov2LocExtra,332 unipCov2LocExtra,339 unipCov2LocExtra,343 unipCov2LocExtra,347 unipCov2LocExtra,351 unipCov2LocExtra,366 unipCov2LocExtra,375 unipCov2LocExtra,435 unipCov2LocExtra,439 unipCov2LocExtra,445 unipCov2LocExtra,448 unipCov2LocExtra,451 unipCov2LocExtra,460 unipCov2LocExtra,472 unipCov2LocExtra,487 unipCov2LocExtra,495 unipCov2LocExtra,499 unipCov2LocExtra,505 unipCov2LocExtra,519 unipCov2LocExtra,522 unipCov2LocExtra,529 unipCov2LocExtra,549 unipCov2LocExtra,572 unipCov2LocExtra,647 unipCov2LocExtra,668 unipCov2LocExtra,672 unipCov2LocExtra,704 unipCov2LocExtra,709 unipCov2LocSignal,17 unipCov2LocSignal,25 unipCov2LocSignal,34 unipCov2LocSignal,38 unipCov2LocSignal,66 unipCov2LocSignal,88 unipCov2LocSignal,114 unipCov2LocSignal,140 unipCov2LocSignal,151 unipCov2LocSignal,162 unipCov2LocSignal,234 unipCov2LocSignal,270 unipCov2LocSignal,292 unipCov2LocSignal,300 unipCov2LocSignal,317 unipCov2LocSignal,333 unipCov2LocSignal,340 unipCov2LocSignal,344 unipCov2LocSignal,348 unipCov2LocSignal,352 unipCov2LocSignal,367 unipCov2LocSignal,376 unipCov2LocSignal,436 unipCov2LocSignal,440 unipCov2LocSignal,446 unipCov2LocSignal,449 unipCov2LocSignal,452 unipCov2LocSignal,461 unipCov2LocSignal,473 unipCov2LocSignal,488 unipCov2LocSignal,496 unipCov2LocSignal,500 unipCov2LocSignal,506 unipCov2LocSignal,520 unipCov2LocSignal,523 unipCov2LocSignal,530 unipCov2LocSignal,550 unipCov2LocSignal,573 unipCov2LocSignal,648 unipCov2LocSignal,669 unipCov2LocSignal,673 unipCov2LocSignal,705 unipCov2LocSignal,710 unipCov2LocTransMemb,17 unipCov2LocTransMemb,25 unipCov2LocTransMemb,34 unipCov2LocTransMemb,38 unipCov2LocTransMemb,66 unipCov2LocTransMemb,88 unipCov2LocTransMemb,114 unipCov2LocTransMemb,140 unipCov2LocTransMemb,151 unipCov2LocTransMemb,162 unipCov2LocTransMemb,234 unipCov2LocTransMemb,270 unipCov2LocTransMemb,292 unipCov2LocTransMemb,300 unipCov2LocTransMemb,317 unipCov2LocTransMemb,333 unipCov2LocTransMemb,340 unipCov2LocTransMemb,344 unipCov2LocTransMemb,348 unipCov2LocTransMemb,352 unipCov2LocTransMemb,367 unipCov2LocTransMemb,376 unipCov2LocTransMemb,436 unipCov2LocTransMemb,440 unipCov2LocTransMemb,446 unipCov2LocTransMemb,449 unipCov2LocTransMemb,452 unipCov2LocTransMemb,461 unipCov2LocTransMemb,473 unipCov2LocTransMemb,488 unipCov2LocTransMemb,496 unipCov2LocTransMemb,500 unipCov2LocTransMemb,506 unipCov2LocTransMemb,520 unipCov2LocTransMemb,523 unipCov2LocTransMemb,530 unipCov2LocTransMemb,550 unipCov2LocTransMemb,573 unipCov2LocTransMemb,648 unipCov2LocTransMemb,669 unipCov2LocTransMemb,673 unipCov2LocTransMemb,705 unipCov2LocTransMemb,710 unipCov2Modif,20 unipCov2Modif,28 unipCov2Modif,37 unipCov2Modif,41 unipCov2Modif,69 unipCov2Modif,91 unipCov2Modif,117 unipCov2Modif,143 unipCov2Modif,154 unipCov2Modif,165 unipCov2Modif,237 unipCov2Modif,273 unipCov2Modif,295 unipCov2Modif,303 unipCov2Modif,320 unipCov2Modif,336 unipCov2Modif,343 unipCov2Modif,347 unipCov2Modif,351 unipCov2Modif,355 unipCov2Modif,370 unipCov2Modif,379 unipCov2Modif,439 unipCov2Modif,443 unipCov2Modif,449 unipCov2Modif,452 unipCov2Modif,455 unipCov2Modif,464 unipCov2Modif,476 unipCov2Modif,491 unipCov2Modif,499 unipCov2Modif,503 unipCov2Modif,509 unipCov2Modif,523 unipCov2Modif,526 unipCov2Modif,533 unipCov2Modif,553 unipCov2Modif,576 unipCov2Modif,651 unipCov2Modif,672 unipCov2Modif,676 unipCov2Modif,708 unipCov2Modif,713 unipCov2Mut,17 unipCov2Mut,25 unipCov2Mut,34 unipCov2Mut,38 unipCov2Mut,66 unipCov2Mut,88 unipCov2Mut,114 unipCov2Mut,140 unipCov2Mut,151 unipCov2Mut,162 unipCov2Mut,234 unipCov2Mut,270 unipCov2Mut,292 unipCov2Mut,300 unipCov2Mut,317 unipCov2Mut,333 unipCov2Mut,340 unipCov2Mut,344 unipCov2Mut,348 unipCov2Mut,352 unipCov2Mut,367 unipCov2Mut,376 unipCov2Mut,436 unipCov2Mut,440 unipCov2Mut,446 unipCov2Mut,449 unipCov2Mut,452 unipCov2Mut,461 unipCov2Mut,473 unipCov2Mut,488 unipCov2Mut,496 unipCov2Mut,500 unipCov2Mut,506 unipCov2Mut,520 unipCov2Mut,523 unipCov2Mut,530 unipCov2Mut,550 unipCov2Mut,573 unipCov2Mut,648 unipCov2Mut,669 unipCov2Mut,673 unipCov2Mut,705 unipCov2Mut,710 unipCov2Other,17 unipCov2Other,25 unipCov2Other,34 unipCov2Other,38 unipCov2Other,66 unipCov2Other,88 unipCov2Other,114 unipCov2Other,140 unipCov2Other,151 unipCov2Other,162 unipCov2Other,234 unipCov2Other,270 unipCov2Other,292 unipCov2Other,300 unipCov2Other,317 unipCov2Other,333 unipCov2Other,340 unipCov2Other,344 unipCov2Other,348 unipCov2Other,352 unipCov2Other,367 unipCov2Other,376 unipCov2Other,436 unipCov2Other,440 unipCov2Other,446 unipCov2Other,449 unipCov2Other,452 unipCov2Other,461 unipCov2Other,473 unipCov2Other,488 unipCov2Other,496 unipCov2Other,500 unipCov2Other,506 unipCov2Other,520 unipCov2Other,523 unipCov2Other,530 unipCov2Other,550 unipCov2Other,573 unipCov2Other,648 unipCov2Other,669 unipCov2Other,673 unipCov2Other,705 unipCov2Other,710 unipCov2Repeat,15 unipCov2Repeat,23 unipCov2Repeat,32 unipCov2Repeat,36 unipCov2Repeat,64 unipCov2Repeat,86 unipCov2Repeat,112 unipCov2Repeat,138 unipCov2Repeat,149 unipCov2Repeat,160 unipCov2Repeat,232 unipCov2Repeat,268 unipCov2Repeat,290 unipCov2Repeat,298 unipCov2Repeat,315 unipCov2Repeat,331 unipCov2Repeat,338 unipCov2Repeat,342 unipCov2Repeat,346 unipCov2Repeat,350 unipCov2Repeat,365 unipCov2Repeat,374 unipCov2Repeat,434 unipCov2Repeat,438 unipCov2Repeat,444 unipCov2Repeat,447 unipCov2Repeat,450 unipCov2Repeat,459 unipCov2Repeat,471 unipCov2Repeat,486 unipCov2Repeat,494 unipCov2Repeat,498 unipCov2Repeat,504 unipCov2Repeat,518 unipCov2Repeat,521 unipCov2Repeat,528 unipCov2Repeat,548 unipCov2Repeat,571 unipCov2Repeat,646 unipCov2Repeat,667 unipCov2Repeat,671 unipCov2Repeat,703 unipCov2Repeat,708 unipCov2Struct,19 unipCov2Struct,27 unipCov2Struct,36 unipCov2Struct,40 unipCov2Struct,68 unipCov2Struct,90 unipCov2Struct,116 unipCov2Struct,142 unipCov2Struct,153 unipCov2Struct,164 unipCov2Struct,236 unipCov2Struct,272 unipCov2Struct,294 unipCov2Struct,302 unipCov2Struct,319 unipCov2Struct,335 unipCov2Struct,342 unipCov2Struct,346 unipCov2Struct,350 unipCov2Struct,354 unipCov2Struct,369 unipCov2Struct,378 unipCov2Struct,438 unipCov2Struct,442 unipCov2Struct,448 unipCov2Struct,451 unipCov2Struct,454 unipCov2Struct,463 unipCov2Struct,475 unipCov2Struct,490 unipCov2Struct,498 unipCov2Struct,502 unipCov2Struct,508 unipCov2Struct,522 unipCov2Struct,525 unipCov2Struct,532 unipCov2Struct,552 unipCov2Struct,575 unipCov2Struct,650 unipCov2Struct,671 unipCov2Struct,675 unipCov2Struct,707 unipCov2Struct,712 vaccines,15 vaccines,24 vaccines,27 vaccines,35 vaccines,39 vaccines,48 vaccines,57 vaccines,64 vaccines,75 vaccines,100 vaccines,119 vaccines,122 vaccines,125 vaccines,129 vaccines,142 vaccines,157 vaccines,162 vaccines,175 vaccines,178 vaccines,184 vaccines,188 vaccines,194 vaccines,201 vaccines,205 vaccines,211 vaccines,216 vaccines,224 vaccines,231 vaccines,254 vaccines,356 vaccines,377 vaccines,383 vaccines,389 vaccines,402 vaccines,414 vaccines,437 vaccines,441 vaccines,450 vaccines,461 vaccines,466 vaccines,533 vaccines,537 vaccines,556 vaccines,596 vaccines,617 vaccines,628 vaccines,634 variantMuts,42 variantMuts,49 variantMuts,63 variantMuts,87 variantMuts,92 variantMuts,164 variantMuts,183 variantMuts,194 variantMuts,202 variantMuts,232 variantMuts,237 variantMuts,718 variantMuts,725 variantMuts,741 variantMuts,747 variantMuts,792 variantMuts,799 variantMuts,822 variantMuts,835 variantMuts,840 variantMuts,844 variantMuts,852 variantMuts,855 variantMuts,861 variantMuts,870 variantMuts,900 variantMuts,956 variantMuts,965 variantMuts,977 variantMuts,985 variantMuts,989 variantMuts,996 variantMuts,1000 variantMuts,1003 variantMuts,1024 variantMuts,1035 variantMuts,1080 variantMuts,1099 variantMuts,1118 variantMuts,1170 variantMuts,1182 variantMuts,1194 variantMuts,1202 variantMuts,1209 variantMuts,1220 variantMuts,1223 variantMuts,1310 varskip,17 varskip,20 varskip,41 varskip,50 varskip,62 varskip,72 varskip,80 varskip,89 varskip,96 varskip,110 varskip,139 varskip,154 weizmanOrfs,11 weizmanOrfs,19 weizmanOrfs,49 weizmanOrfs,62 weizmanOrfs,67 weizmanOrfs,74 weizmanOrfs,90 weizmanOrfs,170 weizmanOrfs,180 weizmanOrfs,195 weizmanOrfs,198 weizmanOrfs,210 weizmanOrfs,237 weizmanOrfs,239 weizmanOrfs,269 weizmanOrfs,273 weizmanOrfs,280 weizmanOrfs,295 weizmanOrfs,304 weizmanOrfs,307 weizmanOrfs,313 weizmanOrfs,321 weizmanOrfs,330 weizmanOrfs,374 windowmaskerSdust,22 windowmaskerSdust,28 windowmaskerSdust,32 windowmaskerSdust,36 windowmaskerSdust,42 windowmaskerSdust,55 windowmaskerSdust,74 windowmaskerSdust,81 theel abEscape,793 bloomEscMabAvg,797 bloomEscMax,803 bloomEscSerumAvg,798 bloomEscTop,801 escape,800 mccoy,793 rappuoli,800 their Q0_tracks,395 Q0_tracks,479 Q0_tracks,721 Q0_tracks,1011 Q0_tracks,1019 Q0_tracks,1194 Q1_tracks,397 Q1_tracks,481 Q1_tracks,723 Q1_tracks,1013 Q1_tracks,1021 Q1_tracks,1196 Q2_tracks,397 Q2_tracks,481 Q2_tracks,723 Q2_tracks,1013 Q2_tracks,1021 Q2_tracks,1196 Q3_tracks,397 Q3_tracks,481 Q3_tracks,723 Q3_tracks,1013 Q3_tracks,1021 Q3_tracks,1196 abEscape,497 bloomEscMabAvg,501 bloomEscMax,507 bloomEscSerumAvg,502 bloomEscTop,505 escape,504 galaxyEna,397 galaxyEna,481 galaxyEna,723 galaxyEna,1013 galaxyEna,1021 galaxyEna,1196 galaxyEnaQ0Ba-1,393 galaxyEnaQ0Ba-1,477 galaxyEnaQ0Ba-1,719 galaxyEnaQ0Ba-1,1009 galaxyEnaQ0Ba-1,1017 galaxyEnaQ0Ba-1,1192 galaxyEnaQ0Ba-1-1,393 galaxyEnaQ0Ba-1-1,477 galaxyEnaQ0Ba-1-1,719 galaxyEnaQ0Ba-1-1,1009 galaxyEnaQ0Ba-1-1,1017 galaxyEnaQ0Ba-1-1,1192 galaxyEnaQ0Ba-1-1-11,393 galaxyEnaQ0Ba-1-1-11,477 galaxyEnaQ0Ba-1-1-11,719 galaxyEnaQ0Ba-1-1-11,1009 galaxyEnaQ0Ba-1-1-11,1017 galaxyEnaQ0Ba-1-1-11,1192 galaxyEnaQ0Ba-1-17,393 galaxyEnaQ0Ba-1-17,477 galaxyEnaQ0Ba-1-17,719 galaxyEnaQ0Ba-1-17,1009 galaxyEnaQ0Ba-1-17,1017 galaxyEnaQ0Ba-1-17,1192 galaxyEnaQ0Ba-2,393 galaxyEnaQ0Ba-2,477 galaxyEnaQ0Ba-2,719 galaxyEnaQ0Ba-2,1009 galaxyEnaQ0Ba-2,1017 galaxyEnaQ0Ba-2,1192 galaxyEnaQ1Ay-4,393 galaxyEnaQ1Ay-4,477 galaxyEnaQ1Ay-4,719 galaxyEnaQ1Ay-4,1009 galaxyEnaQ1Ay-4,1017 galaxyEnaQ1Ay-4,1192 galaxyEnaQ1Ay-4-2,393 galaxyEnaQ1Ay-4-2,477 galaxyEnaQ1Ay-4-2,719 galaxyEnaQ1Ay-4-2,1009 galaxyEnaQ1Ay-4-2,1017 galaxyEnaQ1Ay-4-2,1192 galaxyEnaQ1Ay-4-2-2,393 galaxyEnaQ1Ay-4-2-2,477 galaxyEnaQ1Ay-4-2-2,719 galaxyEnaQ1Ay-4-2-2,1009 galaxyEnaQ1Ay-4-2-2,1017 galaxyEnaQ1Ay-4-2-2,1192 galaxyEnaQ1Ay-43,393 galaxyEnaQ1Ay-43,477 galaxyEnaQ1Ay-43,719 galaxyEnaQ1Ay-43,1009 galaxyEnaQ1Ay-43,1017 galaxyEnaQ1Ay-43,1192 galaxyEnaQ1Ba-1-17,393 galaxyEnaQ1Ba-1-17,477 galaxyEnaQ1Ba-1-17,719 galaxyEnaQ1Ba-1-17,1009 galaxyEnaQ1Ba-1-17,1017 galaxyEnaQ1Ba-1-17,1192 galaxyEnaQ2Ay-120,393 galaxyEnaQ2Ay-120,477 galaxyEnaQ2Ay-120,719 galaxyEnaQ2Ay-120,1009 galaxyEnaQ2Ay-120,1017 galaxyEnaQ2Ay-120,1192 galaxyEnaQ2Ay-122,393 galaxyEnaQ2Ay-122,477 galaxyEnaQ2Ay-122,719 galaxyEnaQ2Ay-122,1009 galaxyEnaQ2Ay-122,1017 galaxyEnaQ2Ay-122,1192 galaxyEnaQ2Ay-4,393 galaxyEnaQ2Ay-4,477 galaxyEnaQ2Ay-4,719 galaxyEnaQ2Ay-4,1009 galaxyEnaQ2Ay-4,1017 galaxyEnaQ2Ay-4,1192 galaxyEnaQ2Ay-5,393 galaxyEnaQ2Ay-5,477 galaxyEnaQ2Ay-5,719 galaxyEnaQ2Ay-5,1009 galaxyEnaQ2Ay-5,1017 galaxyEnaQ2Ay-5,1192 galaxyEnaQ2Ay-6,393 galaxyEnaQ2Ay-6,477 galaxyEnaQ2Ay-6,719 galaxyEnaQ2Ay-6,1009 galaxyEnaQ2Ay-6,1017 galaxyEnaQ2Ay-6,1192 galaxyEnaQ3Ay-4,393 galaxyEnaQ3Ay-4,477 galaxyEnaQ3Ay-4,719 galaxyEnaQ3Ay-4,1009 galaxyEnaQ3Ay-4,1017 galaxyEnaQ3Ay-4,1192 galaxyEnaQ3Ay-5,393 galaxyEnaQ3Ay-5,477 galaxyEnaQ3Ay-5,719 galaxyEnaQ3Ay-5,1009 galaxyEnaQ3Ay-5,1017 galaxyEnaQ3Ay-5,1192 galaxyEnaQ3Ay-9,393 galaxyEnaQ3Ay-9,477 galaxyEnaQ3Ay-9,719 galaxyEnaQ3Ay-9,1009 galaxyEnaQ3Ay-9,1017 galaxyEnaQ3Ay-9,1192 galaxyEnaQ3B-1-1-7,393 galaxyEnaQ3B-1-1-7,477 galaxyEnaQ3B-1-1-7,719 galaxyEnaQ3B-1-1-7,1009 galaxyEnaQ3B-1-1-7,1017 galaxyEnaQ3B-1-1-7,1192 galaxyEnaQ3B-1-617-2,393 galaxyEnaQ3B-1-617-2,477 galaxyEnaQ3B-1-617-2,719 galaxyEnaQ3B-1-617-2,1009 galaxyEnaQ3B-1-617-2,1017 galaxyEnaQ3B-1-617-2,1192 kimRnaMod,72 mccoy,497 microdel,135 microdel,196 microdel,265 nextstrainClade,237 nextstrainFreq,298 nextstrainFreq,322 nextstrainFreq,372 nextstrainGene,64 nextstrainGene,186 nextstrainParsimony,428 nextstrainSamples,87 nextstrainSamples,905 nextstrainSamples,950 nextstrainSamples,968 problematicSites,443 pyle,198 rappuoli,504 rosettaMhc,314 sarsCov2Phylo,841 sarsCov2Phylo,900 sarsCov2Phylo,918 sarsCov2PhyloPub,1006 sarsCov2PhyloPub,1024 strainCons119way,221 strainCons44way,169 transcriptome,272 transcriptome,318 treangen,47 unipCov2Chain,51 unipCov2DisulfBond,47 unipCov2Domain,46 unipCov2LocCytopl,46 unipCov2LocExtra,46 unipCov2LocSignal,47 unipCov2LocTransMemb,47 unipCov2Modif,50 unipCov2Mut,47 unipCov2Other,47 unipCov2Repeat,45 unipCov2Struct,49 variantMuts,215 variantMuts,1187 them Calu3_07hpi,51 ORFs,49 Vero6_05hpi,51 Vero6_24hpi,51 addgene,147 artic,41 articV4,44 articV4_1,55 cpgIslandExt,126 cpgIslandExtUnmasked,129 cpgIslandSuper,126 nextstrainClade,143 nextstrainFreq,68 nextstrainParsimony,85 pdb,77 rapid,168 swift,105 unipCov2AliSwissprot,109 unipCov2Chain,294 unipCov2DisulfBond,290 unipCov2Domain,289 unipCov2LocCytopl,289 unipCov2LocExtra,289 unipCov2LocSignal,290 unipCov2LocTransMemb,290 unipCov2Modif,293 unipCov2Mut,290 unipCov2Other,290 unipCov2Repeat,288 unipCov2Struct,292 weizmanOrfs,57 themselves unipCov2AliSwissprot,60 then Q0_tracks,1003 Q1_tracks,1005 Q2_tracks,1005 Q3_tracks,1005 Starr_Bloom,125 Starr_Bloom_bind,119 addgene,175 addgene,198 addgene,215 cpgIslandExt,256 cpgIslandExtUnmasked,259 cpgIslandSuper,256 galaxyEna,1005 galaxyEnaQ0Ba-1,1001 galaxyEnaQ0Ba-1-1,1001 galaxyEnaQ0Ba-1-1-11,1001 galaxyEnaQ0Ba-1-17,1001 galaxyEnaQ0Ba-2,1001 galaxyEnaQ1Ay-4,1001 galaxyEnaQ1Ay-4-2,1001 galaxyEnaQ1Ay-4-2-2,1001 galaxyEnaQ1Ay-43,1001 galaxyEnaQ1Ba-1-17,1001 galaxyEnaQ2Ay-120,1001 galaxyEnaQ2Ay-122,1001 galaxyEnaQ2Ay-4,1001 galaxyEnaQ2Ay-5,1001 galaxyEnaQ2Ay-6,1001 galaxyEnaQ3Ay-4,1001 galaxyEnaQ3Ay-5,1001 galaxyEnaQ3Ay-9,1001 galaxyEnaQ3B-1-1-7,1001 galaxyEnaQ3B-1-617-2,1001 gordon2,221 gordon2,239 kimTranscripts,82 multiz7way,445 multiz7way,640 multiz7way,678 nextstrainParsimony,155 nextstrainParsimony,190 recomb,188 strainCons119way,661 strainCons119way,795 strainCons119way,989 strainCons119way,1027 strainCons44way,609 strainCons44way,743 strainCons44way,937 strainCons44way,975 transcriptome,74 treangen,229 treangen,253 unipCov2AliSwissprot,194 unipCov2Chain,447 unipCov2DisulfBond,443 unipCov2Domain,442 unipCov2Interest,123 unipCov2LocCytopl,442 unipCov2LocExtra,442 unipCov2LocSignal,443 unipCov2LocTransMemb,443 unipCov2Modif,446 unipCov2Mut,443 unipCov2Other,443 unipCov2Repeat,441 unipCov2Struct,445 variantMuts,959 therapeutic rosettaMhc,22 variantMuts,110 variantMuts,132 there IgG_Z-score-_COVID-19_patients,178 IgM_Z-score-_COVID-19_patients,178 bpmIggCovidSum,187 bpmIgmCovidSum,187 cpgIslandExt,120 cpgIslandExtUnmasked,123 cpgIslandSuper,120 crisprDet,22 crisprDet,59 kimRnaMod,105 multiz7way,162 multiz7way,236 multiz7way,369 nextstrainParsimony,134 nextstrainSamples,317 pbm,187 sarsCov2Phylo,322 sarsCov2PhyloPub,329 strainCons119way,511 strainCons119way,585 strainCons119way,711 strainCons44way,459 strainCons44way,533 strainCons44way,659 variantMuts,816 thereby cd8escape,81 therefore Calu3_07hpi,284 ORFs,282 Vero6_05hpi,284 Vero6_24hpi,284 gold,122 recomb,236 strainCons119way,262 strainCons119way,1942 strainCons44way,210 strainCons44way,1537 weizmanOrfs,290 these IgG_Z-score-_COVID-19_patients,93 IgM_Z-score-_COVID-19_patients,93 PhyloCSF_smooth,6 PhyloCSF_smooth,258 PhyloCSF_smooth,524 PhyloCSFpower,21 PhyloCSFpower,273 PhyloCSFpower,539 Q0_tracks,254 Q0_tracks,1109 Q1_tracks,256 Q1_tracks,1111 Q2_tracks,256 Q2_tracks,1111 Q3_tracks,256 Q3_tracks,1111 abEscape,482 abEscape,526 addgene,45 addgene,63 augustusGene,95 augustusGene,190 bloomEscMabAvg,486 bloomEscMabAvg,530 bloomEscMax,492 bloomEscMax,536 bloomEscSerumAvg,487 bloomEscSerumAvg,531 bloomEscTop,490 bloomEscTop,534 bpmIggCovidSum,102 bpmIgmCovidSum,102 cas13Crispr,91 contacts,76 contacts,124 contacts,188 crisprDet,120 epitopes,29 epitopes,293 escape,489 escape,533 galaxyEna,256 galaxyEna,1111 galaxyEnaQ0Ba-1,252 galaxyEnaQ0Ba-1,1107 galaxyEnaQ0Ba-1-1,252 galaxyEnaQ0Ba-1-1,1107 galaxyEnaQ0Ba-1-1-11,252 galaxyEnaQ0Ba-1-1-11,1107 galaxyEnaQ0Ba-1-17,252 galaxyEnaQ0Ba-1-17,1107 galaxyEnaQ0Ba-2,252 galaxyEnaQ0Ba-2,1107 galaxyEnaQ1Ay-4,252 galaxyEnaQ1Ay-4,1107 galaxyEnaQ1Ay-4-2,252 galaxyEnaQ1Ay-4-2,1107 galaxyEnaQ1Ay-4-2-2,252 galaxyEnaQ1Ay-4-2-2,1107 galaxyEnaQ1Ay-43,252 galaxyEnaQ1Ay-43,1107 galaxyEnaQ1Ba-1-17,252 galaxyEnaQ1Ba-1-17,1107 galaxyEnaQ2Ay-120,252 galaxyEnaQ2Ay-120,1107 galaxyEnaQ2Ay-122,252 galaxyEnaQ2Ay-122,1107 galaxyEnaQ2Ay-4,252 galaxyEnaQ2Ay-4,1107 galaxyEnaQ2Ay-5,252 galaxyEnaQ2Ay-5,1107 galaxyEnaQ2Ay-6,252 galaxyEnaQ2Ay-6,1107 galaxyEnaQ3Ay-4,252 galaxyEnaQ3Ay-4,1107 galaxyEnaQ3Ay-5,252 galaxyEnaQ3Ay-5,1107 galaxyEnaQ3Ay-9,252 galaxyEnaQ3Ay-9,1107 galaxyEnaQ3B-1-1-7,252 galaxyEnaQ3B-1-1-7,1107 galaxyEnaQ3B-1-617-2,252 galaxyEnaQ3B-1-617-2,1107 iedb,49 kimTranscripts,78 kimTranscripts,90 kimTranscripts,111 kimTranscripts,292 kimTranscripts,315 mccoy,482 mccoy,526 multiz7way,76 nextstrainSamples,193 nextstrainSamples,449 pbm,102 pbmShanghai,159 phyloGenes,13 potPathoIndel,49 potPathoIndel,79 primers,237 problematicSites,147 problematicSites,265 pyle,51 rappuoli,489 rappuoli,533 resist,157 simpleRepeat,33 strainCons119way,63 strainCons119way,83 strainCons119way,1878 strainCons44way,1473 targets,49 targets,74 transcriptome,70 transcriptome,82 transcriptome,103 transcriptome,315 treangen,22 vaccines,632 thesis multiz7way,1239 strainCons119way,2617 strainCons44way,2212 theta nextstrainFreq21E_Theta,2 nextstrainFreq21E_Theta,5 nextstrainSamples21E_Theta,2 nextstrainSamples21E_Theta,8 they IgG_Z-score-_COVID-19_patients,190 IgM_Z-score-_COVID-19_patients,190 PhyloCSF_smooth,506 PhyloCSFpower,521 bpmIggCovidSum,199 bpmIgmCovidSum,199 contacts,199 epitopes,102 nextstrainClade,127 nextstrainFreq,139 nextstrainGene,97 nextstrainParsimony,296 nextstrainSamples,573 nextstrainSamples,607 nextstrainSamples,688 pbm,199 pbmShanghai,72 problematicSites,104 problematicSites,441 publicAnnots,37 resist,35 sarsCov2Phylo,745 targets,65 thick Q0_tracks,508 Q0_tracks,532 Q1_tracks,510 Q1_tracks,534 Q2_tracks,510 Q2_tracks,534 Q3_tracks,510 Q3_tracks,534 contacts,49 galaxyEna,510 galaxyEna,534 galaxyEnaQ0Ba-1,506 galaxyEnaQ0Ba-1,530 galaxyEnaQ0Ba-1-1,506 galaxyEnaQ0Ba-1-1,530 galaxyEnaQ0Ba-1-1-11,506 galaxyEnaQ0Ba-1-1-11,530 galaxyEnaQ0Ba-1-17,506 galaxyEnaQ0Ba-1-17,530 galaxyEnaQ0Ba-2,506 galaxyEnaQ0Ba-2,530 galaxyEnaQ1Ay-4,506 galaxyEnaQ1Ay-4,530 galaxyEnaQ1Ay-4-2,506 galaxyEnaQ1Ay-4-2,530 galaxyEnaQ1Ay-4-2-2,506 galaxyEnaQ1Ay-4-2-2,530 galaxyEnaQ1Ay-43,506 galaxyEnaQ1Ay-43,530 galaxyEnaQ1Ba-1-17,506 galaxyEnaQ1Ba-1-17,530 galaxyEnaQ2Ay-120,506 galaxyEnaQ2Ay-120,530 galaxyEnaQ2Ay-122,506 galaxyEnaQ2Ay-122,530 galaxyEnaQ2Ay-4,506 galaxyEnaQ2Ay-4,530 galaxyEnaQ2Ay-5,506 galaxyEnaQ2Ay-5,530 galaxyEnaQ2Ay-6,506 galaxyEnaQ2Ay-6,530 galaxyEnaQ3Ay-4,506 galaxyEnaQ3Ay-4,530 galaxyEnaQ3Ay-5,506 galaxyEnaQ3Ay-5,530 galaxyEnaQ3Ay-9,506 galaxyEnaQ3Ay-9,530 galaxyEnaQ3B-1-1-7,506 galaxyEnaQ3B-1-1-7,530 galaxyEnaQ3B-1-617-2,506 galaxyEnaQ3B-1-617-2,530 kimTranscripts,116 transcriptome,108 thin Q0_tracks,540 Q1_tracks,542 Q2_tracks,542 Q3_tracks,542 contacts,66 galaxyEna,542 galaxyEnaQ0Ba-1,538 galaxyEnaQ0Ba-1-1,538 galaxyEnaQ0Ba-1-1-11,538 galaxyEnaQ0Ba-1-17,538 galaxyEnaQ0Ba-2,538 galaxyEnaQ1Ay-4,538 galaxyEnaQ1Ay-4-2,538 galaxyEnaQ1Ay-4-2-2,538 galaxyEnaQ1Ay-43,538 galaxyEnaQ1Ba-1-17,538 galaxyEnaQ2Ay-120,538 galaxyEnaQ2Ay-122,538 galaxyEnaQ2Ay-4,538 galaxyEnaQ2Ay-5,538 galaxyEnaQ2Ay-6,538 galaxyEnaQ3Ay-4,538 galaxyEnaQ3Ay-5,538 galaxyEnaQ3Ay-9,538 galaxyEnaQ3B-1-1-7,538 galaxyEnaQ3B-1-617-2,538 kimTranscripts,119 transcriptome,111 third Calu3_07hpi,165 ORFs,163 PhyloCSF_smooth,344 PhyloCSFpower,359 Vero6_05hpi,165 Vero6_24hpi,165 crisprDet,73 strainCons119way,290 strainCons44way,238 weizmanOrfs,171 third-party variantMuts,1026 thirty icshape,49 rapid,71 this IgG_Z-score-_COVID-19_patients,15 IgG_Z-score-_COVID-19_patients,73 IgG_Z-score-_COVID-19_patients,341 IgM_Z-score-_COVID-19_patients,15 IgM_Z-score-_COVID-19_patients,73 IgM_Z-score-_COVID-19_patients,341 PhyloCSF_smooth,292 PhyloCSF_smooth,532 PhyloCSFpower,307 PhyloCSFpower,547 Q0_tracks,19 Q0_tracks,32 Q0_tracks,127 Q0_tracks,618 Q0_tracks,884 Q1_tracks,21 Q1_tracks,34 Q1_tracks,129 Q1_tracks,620 Q1_tracks,886 Q2_tracks,21 Q2_tracks,34 Q2_tracks,129 Q2_tracks,620 Q2_tracks,886 Q3_tracks,21 Q3_tracks,34 Q3_tracks,129 Q3_tracks,620 Q3_tracks,886 Starr_Bloom,16 Starr_Bloom,154 Starr_Bloom_bind,17 Starr_Bloom_bind,148 abEscape,19 addgene,14 addgene,247 artic,14 artic,124 articV4,14 articV4,124 articV4_1,14 articV4_1,137 augustusGene,13 augustusGene,106 augustusGene,224 bloomEscMabAvg,23 bloomEscMax,29 bloomEscSerumAvg,24 bloomEscTop,27 bpmIggCovidSum,24 bpmIggCovidSum,82 bpmIggCovidSum,350 bpmIgmCovidSum,24 bpmIgmCovidSum,82 bpmIgmCovidSum,350 cas13Crispr,10 cas13Crispr,409 cas13Crispr,472 cd8escape,114 cd8escape,134 contacts,18 contacts,337 cpgIslandExt,72 cpgIslandExt,222 cpgIslandExt,585 cpgIslandExtUnmasked,75 cpgIslandExtUnmasked,225 cpgIslandExtUnmasked,588 cpgIslandSuper,72 cpgIslandSuper,222 cpgIslandSuper,585 crisprDet,10 crisprDet,27 crisprDet,149 epitopes,12 epitopes,159 escape,26 galaxyEna,21 galaxyEna,34 galaxyEna,129 galaxyEna,620 galaxyEna,886 galaxyEnaQ0Ba-1,17 galaxyEnaQ0Ba-1,30 galaxyEnaQ0Ba-1,125 galaxyEnaQ0Ba-1,616 galaxyEnaQ0Ba-1,882 galaxyEnaQ0Ba-1-1,17 galaxyEnaQ0Ba-1-1,30 galaxyEnaQ0Ba-1-1,125 galaxyEnaQ0Ba-1-1,616 galaxyEnaQ0Ba-1-1,882 galaxyEnaQ0Ba-1-1-11,17 galaxyEnaQ0Ba-1-1-11,30 galaxyEnaQ0Ba-1-1-11,125 galaxyEnaQ0Ba-1-1-11,616 galaxyEnaQ0Ba-1-1-11,882 galaxyEnaQ0Ba-1-17,17 galaxyEnaQ0Ba-1-17,30 galaxyEnaQ0Ba-1-17,125 galaxyEnaQ0Ba-1-17,616 galaxyEnaQ0Ba-1-17,882 galaxyEnaQ0Ba-2,17 galaxyEnaQ0Ba-2,30 galaxyEnaQ0Ba-2,125 galaxyEnaQ0Ba-2,616 galaxyEnaQ0Ba-2,882 galaxyEnaQ1Ay-4,17 galaxyEnaQ1Ay-4,30 galaxyEnaQ1Ay-4,125 galaxyEnaQ1Ay-4,616 galaxyEnaQ1Ay-4,882 galaxyEnaQ1Ay-4-2,17 galaxyEnaQ1Ay-4-2,30 galaxyEnaQ1Ay-4-2,125 galaxyEnaQ1Ay-4-2,616 galaxyEnaQ1Ay-4-2,882 galaxyEnaQ1Ay-4-2-2,17 galaxyEnaQ1Ay-4-2-2,30 galaxyEnaQ1Ay-4-2-2,125 galaxyEnaQ1Ay-4-2-2,616 galaxyEnaQ1Ay-4-2-2,882 galaxyEnaQ1Ay-43,17 galaxyEnaQ1Ay-43,30 galaxyEnaQ1Ay-43,125 galaxyEnaQ1Ay-43,616 galaxyEnaQ1Ay-43,882 galaxyEnaQ1Ba-1-17,17 galaxyEnaQ1Ba-1-17,30 galaxyEnaQ1Ba-1-17,125 galaxyEnaQ1Ba-1-17,616 galaxyEnaQ1Ba-1-17,882 galaxyEnaQ2Ay-120,17 galaxyEnaQ2Ay-120,30 galaxyEnaQ2Ay-120,125 galaxyEnaQ2Ay-120,616 galaxyEnaQ2Ay-120,882 galaxyEnaQ2Ay-122,17 galaxyEnaQ2Ay-122,30 galaxyEnaQ2Ay-122,125 galaxyEnaQ2Ay-122,616 galaxyEnaQ2Ay-122,882 galaxyEnaQ2Ay-4,17 galaxyEnaQ2Ay-4,30 galaxyEnaQ2Ay-4,125 galaxyEnaQ2Ay-4,616 galaxyEnaQ2Ay-4,882 galaxyEnaQ2Ay-5,17 galaxyEnaQ2Ay-5,30 galaxyEnaQ2Ay-5,125 galaxyEnaQ2Ay-5,616 galaxyEnaQ2Ay-5,882 galaxyEnaQ2Ay-6,17 galaxyEnaQ2Ay-6,30 galaxyEnaQ2Ay-6,125 galaxyEnaQ2Ay-6,616 galaxyEnaQ2Ay-6,882 galaxyEnaQ3Ay-4,17 galaxyEnaQ3Ay-4,30 galaxyEnaQ3Ay-4,125 galaxyEnaQ3Ay-4,616 galaxyEnaQ3Ay-4,882 galaxyEnaQ3Ay-5,17 galaxyEnaQ3Ay-5,30 galaxyEnaQ3Ay-5,125 galaxyEnaQ3Ay-5,616 galaxyEnaQ3Ay-5,882 galaxyEnaQ3Ay-9,17 galaxyEnaQ3Ay-9,30 galaxyEnaQ3Ay-9,125 galaxyEnaQ3Ay-9,616 galaxyEnaQ3Ay-9,882 galaxyEnaQ3B-1-1-7,17 galaxyEnaQ3B-1-1-7,30 galaxyEnaQ3B-1-1-7,125 galaxyEnaQ3B-1-1-7,616 galaxyEnaQ3B-1-1-7,882 galaxyEnaQ3B-1-617-2,17 galaxyEnaQ3B-1-617-2,30 galaxyEnaQ3B-1-617-2,125 galaxyEnaQ3B-1-617-2,616 galaxyEnaQ3B-1-617-2,882 gap,8 gap,36 gap,44 gap,74 gap,115 gc5BaseBw,38 gc5BaseBw,77 genscan,11 genscan,65 genscan,128 gold,9 gold,38 gold,43 gold,69 gold,139 gordon2,16 gordon2,187 icshape,11 icshape,89 iedb,11 iedb,47 kimIvtCov,18 kimIvtCov,42 kimNp,19 kimNp,59 kimRnaMod,27 kimRnaMod,171 kimTranscripts,19 kimTranscripts,50 kimTranscripts,251 kimTranscripts,308 kimTranscripts,388 kimTranscripts,457 mccoy,19 microdel,10 multiz7way,16 multiz7way,802 multiz7way,814 ncbiGeneBGP,164 ncbiProducts,180 nextstrainClade,110 nextstrainClade,186 nextstrainFreq,79 nextstrainFreq,178 nextstrainGene,72 nextstrainGene,87 nextstrainGene,136 nextstrainParsimony,245 nextstrainParsimony,348 nextstrainParsimony,405 nextstrainSamples,90 nextstrainSamples,211 nextstrainSamples,229 nextstrainSamples,477 nextstrainSamples,812 nextstrainSamples,835 nextstrainSamples,846 nextstrainSamples,882 pbm,24 pbm,82 pbm,350 pbmShanghai,27 pbmShanghai,110 pbmShanghai,261 pbmShanghai,467 pdb,14 phyloGenes,385 pond,17 pond,91 pond,105 pond,152 poranHla1,9 poranHla1,198 poranHla2,9 poranHla2,198 potPathoIndel,19 primers,12 primers,323 primers,356 problematicSites,85 problematicSites,505 publicAnnots,14 publicAnnots,34 publicAnnots,61 pyle,15 rapid,16 rapid,42 rapid,134 rapid,173 rapid,278 rappuoli,26 recomb,14 recomb,280 resist,16 resistPred,24 resistPred,137 rfam,155 rnaStructRangan,12 rnaStructRangan,80 rosettaMhc,167 sarsCov2Phylo,20 sarsCov2Phylo,507 sarsCov2Phylo,710 sarsCov2Phylo,818 sarsCov2PhyloPub,18 sarsCov2PhyloPub,536 sarsCov2PhyloPub,901 sarsCov2PhyloPub,957 simpleRepeat,12 simpleRepeat,31 spikeMuts,39 spikeMuts,66 spikeMuts,90 spikeMuts,119 spikeMuts,258 spikeMuts,290 spikeMuts,328 spikeMuts,381 strainCons119way,22 strainCons119way,42 strainCons119way,161 strainCons119way,772 strainCons119way,1712 strainCons119way,1759 strainCons119way,1818 strainCons119way,2129 strainCons119way,2192 strainCons44way,19 strainCons44way,39 strainCons44way,109 strainCons44way,720 strainCons44way,1307 strainCons44way,1354 strainCons44way,1413 strainCons44way,1724 strainCons44way,1787 strainCons44way,2250 swift,11 swift,26 swift,110 swift,207 targets,12 targets,180 transcriptome,11 transcriptome,42 transcriptome,233 transcriptome,394 transcriptome,463 treangen,16 treangen,49 treangen,85 treangen,137 treangen,179 ucscToINSDC,14 ucscToINSDC,46 ucscToRefSeq,9 ucscToRefSeq,40 unipCov2AliSwissprot,15 unipCov2AliSwissprot,37 unipCov2AliSwissprot,43 unipCov2AliSwissprot,206 unipCov2AliSwissprot,253 unipCov2AliSwissprot,401 unipCov2Chain,14 unipCov2Chain,81 unipCov2Chain,103 unipCov2Chain,105 unipCov2Chain,459 unipCov2Chain,483 unipCov2Chain,631 unipCov2DisulfBond,10 unipCov2DisulfBond,77 unipCov2DisulfBond,99 unipCov2DisulfBond,101 unipCov2DisulfBond,455 unipCov2DisulfBond,479 unipCov2DisulfBond,627 unipCov2Domain,9 unipCov2Domain,76 unipCov2Domain,98 unipCov2Domain,100 unipCov2Domain,454 unipCov2Domain,478 unipCov2Domain,626 unipCov2Interest,11 unipCov2Interest,135 unipCov2Interest,159 unipCov2Interest,284 unipCov2LocCytopl,9 unipCov2LocCytopl,76 unipCov2LocCytopl,98 unipCov2LocCytopl,100 unipCov2LocCytopl,454 unipCov2LocCytopl,478 unipCov2LocCytopl,626 unipCov2LocExtra,9 unipCov2LocExtra,76 unipCov2LocExtra,98 unipCov2LocExtra,100 unipCov2LocExtra,454 unipCov2LocExtra,478 unipCov2LocExtra,626 unipCov2LocSignal,10 unipCov2LocSignal,77 unipCov2LocSignal,99 unipCov2LocSignal,101 unipCov2LocSignal,455 unipCov2LocSignal,479 unipCov2LocSignal,627 unipCov2LocTransMemb,10 unipCov2LocTransMemb,77 unipCov2LocTransMemb,99 unipCov2LocTransMemb,101 unipCov2LocTransMemb,455 unipCov2LocTransMemb,479 unipCov2LocTransMemb,627 unipCov2Modif,13 unipCov2Modif,80 unipCov2Modif,102 unipCov2Modif,104 unipCov2Modif,458 unipCov2Modif,482 unipCov2Modif,630 unipCov2Mut,10 unipCov2Mut,77 unipCov2Mut,99 unipCov2Mut,101 unipCov2Mut,455 unipCov2Mut,479 unipCov2Mut,627 unipCov2Other,10 unipCov2Other,77 unipCov2Other,99 unipCov2Other,101 unipCov2Other,455 unipCov2Other,479 unipCov2Other,627 unipCov2Repeat,8 unipCov2Repeat,75 unipCov2Repeat,97 unipCov2Repeat,99 unipCov2Repeat,453 unipCov2Repeat,477 unipCov2Repeat,625 unipCov2Struct,12 unipCov2Struct,79 unipCov2Struct,101 unipCov2Struct,103 unipCov2Struct,457 unipCov2Struct,481 unipCov2Struct,629 vaccines,12 vaccines,115 vaccines,386 vaccines,637 variantMuts,25 variantMuts,67 variantMuts,160 variantMuts,178 variantMuts,245 variantMuts,982 variantMuts,1047 variantMuts,1164 varskip,14 varskip,130 windowmaskerSdust,13 windowmaskerSdust,49 windowmaskerSdust,87 thornlow problematicSites,589 recomb,316 recomb,324 sarsCov2Phylo,1100 sarsCov2PhyloPub,1220 those Q0_tracks,1004 Q1_tracks,1006 Q2_tracks,1006 Q3_tracks,1006 galaxyEna,1006 galaxyEnaQ0Ba-1,1002 galaxyEnaQ0Ba-1-1,1002 galaxyEnaQ0Ba-1-1-11,1002 galaxyEnaQ0Ba-1-17,1002 galaxyEnaQ0Ba-2,1002 galaxyEnaQ1Ay-4,1002 galaxyEnaQ1Ay-4-2,1002 galaxyEnaQ1Ay-4-2-2,1002 galaxyEnaQ1Ay-43,1002 galaxyEnaQ1Ba-1-17,1002 galaxyEnaQ2Ay-120,1002 galaxyEnaQ2Ay-122,1002 galaxyEnaQ2Ay-4,1002 galaxyEnaQ2Ay-5,1002 galaxyEnaQ2Ay-6,1002 galaxyEnaQ3Ay-4,1002 galaxyEnaQ3Ay-5,1002 galaxyEnaQ3Ay-9,1002 galaxyEnaQ3B-1-1-7,1002 galaxyEnaQ3B-1-617-2,1002 multiz7way,359 multiz7way,518 multiz7way,544 potPathoIndel,128 primers,18 problematicSites,67 sarsCov2Phylo,118 sarsCov2PhyloPub,52 sarsCov2PhyloPub,131 strainCons119way,701 strainCons119way,868 strainCons119way,894 strainCons44way,649 strainCons44way,816 strainCons44way,842 though PhyloCSF_smooth,352 PhyloCSFpower,367 thousand nextstrainSamples,620 thousands nextstrainSamples,518 threaded multiz7way,1195 strainCons119way,2573 strainCons44way,2168 threats Q0_tracks,1282 Q1_tracks,1284 Q2_tracks,1284 Q3_tracks,1284 galaxyEna,1284 galaxyEnaQ0Ba-1,1280 galaxyEnaQ0Ba-1-1,1280 galaxyEnaQ0Ba-1-1-11,1280 galaxyEnaQ0Ba-1-17,1280 galaxyEnaQ0Ba-2,1280 galaxyEnaQ1Ay-4,1280 galaxyEnaQ1Ay-4-2,1280 galaxyEnaQ1Ay-4-2-2,1280 galaxyEnaQ1Ay-43,1280 galaxyEnaQ1Ba-1-17,1280 galaxyEnaQ2Ay-120,1280 galaxyEnaQ2Ay-122,1280 galaxyEnaQ2Ay-4,1280 galaxyEnaQ2Ay-5,1280 galaxyEnaQ2Ay-6,1280 galaxyEnaQ3Ay-4,1280 galaxyEnaQ3Ay-5,1280 galaxyEnaQ3Ay-9,1280 galaxyEnaQ3B-1-1-7,1280 galaxyEnaQ3B-1-617-2,1280 three Calu3_07hpi,121 ORFs,119 PhyloCSF_smooth,447 PhyloCSF_smooth,494 PhyloCSF_smooth,540 PhyloCSFpower,462 PhyloCSFpower,509 PhyloCSFpower,555 Q0_tracks,949 Q1_tracks,951 Q2_tracks,951 Q3_tracks,7 Q3_tracks,14 Q3_tracks,951 Vero6_05hpi,121 Vero6_24hpi,121 abEscape,193 abEscape,532 bloomEscMabAvg,197 bloomEscMabAvg,536 bloomEscMax,203 bloomEscMax,542 bloomEscSerumAvg,198 bloomEscSerumAvg,537 bloomEscTop,201 bloomEscTop,540 cas13Crispr,200 crisprDet,24 crisprDet,61 escape,200 escape,539 galaxyEna,951 galaxyEnaQ0Ba-1,947 galaxyEnaQ0Ba-1-1,947 galaxyEnaQ0Ba-1-1-11,947 galaxyEnaQ0Ba-1-17,947 galaxyEnaQ0Ba-2,947 galaxyEnaQ1Ay-4,947 galaxyEnaQ1Ay-4-2,947 galaxyEnaQ1Ay-4-2-2,947 galaxyEnaQ1Ay-43,947 galaxyEnaQ1Ba-1-17,947 galaxyEnaQ2Ay-120,947 galaxyEnaQ2Ay-122,947 galaxyEnaQ2Ay-4,947 galaxyEnaQ2Ay-5,947 galaxyEnaQ2Ay-6,947 galaxyEnaQ3Ay-4,947 galaxyEnaQ3Ay-5,947 galaxyEnaQ3Ay-9,947 galaxyEnaQ3B-1-1-7,947 galaxyEnaQ3B-1-617-2,947 mccoy,193 mccoy,532 microdel,31 pbmShanghai,104 pbmShanghai,207 pbmShanghai,213 potPathoIndel,197 primers,93 primers,175 problematicSites,349 rappuoli,200 rappuoli,539 vaccines,18 vaccines,442 variantMuts,1064 weizmanOrfs,127 threevaccines.cds vaccines,324 vaccines,327 threevaccines.fa vaccines,272 vaccines,310 vaccines,329 threshold Q0_tracks,765 Q0_tracks,790 Q1_tracks,767 Q1_tracks,792 Q2_tracks,767 Q2_tracks,792 Q3_tracks,767 Q3_tracks,792 contacts,163 galaxyEna,767 galaxyEna,792 galaxyEnaQ0Ba-1,763 galaxyEnaQ0Ba-1,788 galaxyEnaQ0Ba-1-1,763 galaxyEnaQ0Ba-1-1,788 galaxyEnaQ0Ba-1-1-11,763 galaxyEnaQ0Ba-1-1-11,788 galaxyEnaQ0Ba-1-17,763 galaxyEnaQ0Ba-1-17,788 galaxyEnaQ0Ba-2,763 galaxyEnaQ0Ba-2,788 galaxyEnaQ1Ay-4,763 galaxyEnaQ1Ay-4,788 galaxyEnaQ1Ay-4-2,763 galaxyEnaQ1Ay-4-2,788 galaxyEnaQ1Ay-4-2-2,763 galaxyEnaQ1Ay-4-2-2,788 galaxyEnaQ1Ay-43,763 galaxyEnaQ1Ay-43,788 galaxyEnaQ1Ba-1-17,763 galaxyEnaQ1Ba-1-17,788 galaxyEnaQ2Ay-120,763 galaxyEnaQ2Ay-120,788 galaxyEnaQ2Ay-122,763 galaxyEnaQ2Ay-122,788 galaxyEnaQ2Ay-4,763 galaxyEnaQ2Ay-4,788 galaxyEnaQ2Ay-5,763 galaxyEnaQ2Ay-5,788 galaxyEnaQ2Ay-6,763 galaxyEnaQ2Ay-6,788 galaxyEnaQ3Ay-4,763 galaxyEnaQ3Ay-4,788 galaxyEnaQ3Ay-5,763 galaxyEnaQ3Ay-5,788 galaxyEnaQ3Ay-9,763 galaxyEnaQ3Ay-9,788 galaxyEnaQ3B-1-1-7,763 galaxyEnaQ3B-1-1-7,788 galaxyEnaQ3B-1-617-2,763 galaxyEnaQ3B-1-617-2,788 pbmShanghai,312 through IgG_Z-score-_COVID-19_patients,214 IgM_Z-score-_COVID-19_patients,214 Q0_tracks,79 Q0_tracks,192 Q1_tracks,81 Q1_tracks,194 Q2_tracks,81 Q2_tracks,194 Q3_tracks,81 Q3_tracks,194 addgene,25 bpmIggCovidSum,223 bpmIgmCovidSum,223 galaxyEna,9 galaxyEna,81 galaxyEna,194 galaxyEnaQ0Ba-1,77 galaxyEnaQ0Ba-1,190 galaxyEnaQ0Ba-1-1,77 galaxyEnaQ0Ba-1-1,190 galaxyEnaQ0Ba-1-1-11,77 galaxyEnaQ0Ba-1-1-11,190 galaxyEnaQ0Ba-1-17,77 galaxyEnaQ0Ba-1-17,190 galaxyEnaQ0Ba-2,77 galaxyEnaQ0Ba-2,190 galaxyEnaQ1Ay-4,77 galaxyEnaQ1Ay-4,190 galaxyEnaQ1Ay-4-2,77 galaxyEnaQ1Ay-4-2,190 galaxyEnaQ1Ay-4-2-2,77 galaxyEnaQ1Ay-4-2-2,190 galaxyEnaQ1Ay-43,77 galaxyEnaQ1Ay-43,190 galaxyEnaQ1Ba-1-17,77 galaxyEnaQ1Ba-1-17,190 galaxyEnaQ2Ay-120,77 galaxyEnaQ2Ay-120,190 galaxyEnaQ2Ay-122,77 galaxyEnaQ2Ay-122,190 galaxyEnaQ2Ay-4,77 galaxyEnaQ2Ay-4,190 galaxyEnaQ2Ay-5,77 galaxyEnaQ2Ay-5,190 galaxyEnaQ2Ay-6,77 galaxyEnaQ2Ay-6,190 galaxyEnaQ3Ay-4,77 galaxyEnaQ3Ay-4,190 galaxyEnaQ3Ay-5,77 galaxyEnaQ3Ay-5,190 galaxyEnaQ3Ay-9,77 galaxyEnaQ3Ay-9,190 galaxyEnaQ3B-1-1-7,77 galaxyEnaQ3B-1-1-7,190 galaxyEnaQ3B-1-617-2,77 galaxyEnaQ3B-1-617-2,190 gap,108 icshape,118 iedb,58 nextstrainClade,215 nextstrainFreq,207 nextstrainGene,164 nextstrainParsimony,376 pbm,223 pbmShanghai,370 primers,352 problematicSites,534 recomb,309 resistPred,92 rosettaMhc,114 rosettaMhc,323 sarsCov2PhyloPub,886 unipCov2AliSwissprot,199 unipCov2Chain,452 unipCov2DisulfBond,448 unipCov2Domain,447 unipCov2Interest,128 unipCov2LocCytopl,447 unipCov2LocExtra,447 unipCov2LocSignal,448 unipCov2LocTransMemb,448 unipCov2Modif,451 unipCov2Mut,448 unipCov2Other,448 unipCov2Repeat,446 unipCov2Struct,450 variantMuts,1010 throughout pyle,326 thurakia recomb,6 recomb,35 recomb,78 thus phyloGenes,178 tian pbmShanghai,502 tick kimRnaMod,80 nextstrainSamples,415 sarsCov2Phylo,451 sarsCov2PhyloPub,480 tickmarks kimRnaMod,50 tiled rapid,50 rapid,358 swift,42 tilesize primers,295 tiling kimIvtCov,37 time Calu3_07hpi,117 Calu3_07hpi,242 ORFs,115 ORFs,240 Q0_tracks,400 Q1_tracks,402 Q2_tracks,402 Q3_tracks,402 Vero6_05hpi,117 Vero6_05hpi,242 Vero6_24hpi,117 Vero6_24hpi,242 cpgIslandExt,99 cpgIslandExt,237 cpgIslandExtUnmasked,102 cpgIslandExtUnmasked,240 cpgIslandSuper,99 cpgIslandSuper,237 galaxyEna,402 galaxyEnaQ0Ba-1,398 galaxyEnaQ0Ba-1-1,398 galaxyEnaQ0Ba-1-1-11,398 galaxyEnaQ0Ba-1-17,398 galaxyEnaQ0Ba-2,398 galaxyEnaQ1Ay-4,398 galaxyEnaQ1Ay-4-2,398 galaxyEnaQ1Ay-4-2-2,398 galaxyEnaQ1Ay-43,398 galaxyEnaQ1Ba-1-17,398 galaxyEnaQ2Ay-120,398 galaxyEnaQ2Ay-122,398 galaxyEnaQ2Ay-4,398 galaxyEnaQ2Ay-5,398 galaxyEnaQ2Ay-6,398 galaxyEnaQ3Ay-4,398 galaxyEnaQ3Ay-5,398 galaxyEnaQ3Ay-9,398 galaxyEnaQ3B-1-1-7,398 galaxyEnaQ3B-1-617-2,398 nextstrainFreq,37 nextstrainParsimony,54 variantMuts,1100 variantMuts,1119 weizmanOrfs,123 weizmanOrfs,248 times pbmShanghai,214 pond,29 timestamped nextstrainClade,37 timothy cas13Crispr,491 tiny vaccines,467 vaccines,597 tm nextstrainFreq,365 nextstrainParsimony,294 nextstrainSamples,8 nextstrainSamples19A,12 nextstrainSamples19B,12 nextstrainSamples20A,12 nextstrainSamples20B,12 nextstrainSamples20C,12 nextstrainSamples20D,12 nextstrainSamples20F,12 nextstrainSamples20G,12 nextstrainSamples21A_Delta,14 nextstrainSamples21B_Kappa,14 nextstrainSamples21D_Eta,14 nextstrainSamples21E_Theta,14 nextstrainSamples21F_Iota,14 nextstrainSamples21G_Lambda,14 nextstrainSamples21H_Mu,14 nextstrainSamples21I_Delta,14 nextstrainSamples21J_Delta,14 nextstrainSamplesAll,9 nextstrainSamplesRb,12 nextstrainSamplesViewAll,8 nextstrainSamplesViewNewClades,8 sarsCov2Phylo,15 sarsCov2PhyloFull,10 sarsCov2PhyloMinAf001,16 sarsCov2PhyloMinAf01,16 tn Starr_Bloom,239 Starr_Bloom_bind,233 abEscape,728 abEscape,826 bloomEscMabAvg,732 bloomEscMabAvg,830 bloomEscMax,738 bloomEscMax,836 bloomEscSerumAvg,733 bloomEscSerumAvg,831 bloomEscTop,736 bloomEscTop,834 escape,735 escape,833 mccoy,728 mccoy,826 pdb,142 rappuoli,735 rappuoli,833 tname vaccines,281 to Calu3_07hpi,82 Calu3_07hpi,97 Calu3_07hpi,200 Calu3_07hpi,330 IgG_Z-score-_COVID-19_patients,99 IgG_Z-score-_COVID-19_patients,126 IgG_Z-score-_COVID-19_patients,150 IgG_Z-score-_COVID-19_patients,154 IgG_Z-score-_COVID-19_patients,186 IgG_Z-score-_COVID-19_patients,220 IgG_Z-score-_COVID-19_patients,248 IgG_Z-score-_COVID-19_patients,259 IgG_Z-score-_COVID-19_patients,263 IgG_Z-score-_COVID-19_patients,265 IgG_Z-score-_COVID-19_patients,330 IgG_Z-score-_COVID-19_patients,356 IgG_Z-score-_COVID-19_patients,386 IgM_Z-score-_COVID-19_patients,99 IgM_Z-score-_COVID-19_patients,126 IgM_Z-score-_COVID-19_patients,150 IgM_Z-score-_COVID-19_patients,154 IgM_Z-score-_COVID-19_patients,186 IgM_Z-score-_COVID-19_patients,220 IgM_Z-score-_COVID-19_patients,248 IgM_Z-score-_COVID-19_patients,259 IgM_Z-score-_COVID-19_patients,263 IgM_Z-score-_COVID-19_patients,265 IgM_Z-score-_COVID-19_patients,330 IgM_Z-score-_COVID-19_patients,356 IgM_Z-score-_COVID-19_patients,386 M1_library,11 M2_library,11 ORFs,80 ORFs,95 ORFs,198 ORFs,328 PhyloCSF_smooth,17 PhyloCSF_smooth,97 PhyloCSF_smooth,157 PhyloCSF_smooth,206 PhyloCSF_smooth,228 PhyloCSF_smooth,252 PhyloCSF_smooth,510 PhyloCSF_smooth,512 PhyloCSF_smooth,611 PhyloCSF_smooth,655 PhyloCSF_smooth,681 PhyloCSF_smooth,714 PhyloCSFpower,32 PhyloCSFpower,112 PhyloCSFpower,172 PhyloCSFpower,221 PhyloCSFpower,243 PhyloCSFpower,267 PhyloCSFpower,525 PhyloCSFpower,527 PhyloCSFpower,622 PhyloCSFpower,643 PhyloCSFpower,685 Q0_tracks,59 Q0_tracks,82 Q0_tracks,131 Q0_tracks,170 Q0_tracks,322 Q0_tracks,338 Q0_tracks,387 Q0_tracks,408 Q0_tracks,419 Q0_tracks,712 Q0_tracks,747 Q0_tracks,782 Q0_tracks,931 Q0_tracks,973 Q0_tracks,1022 Q0_tracks,1028 Q0_tracks,1192 Q0_tracks,1211 Q0_tracks,1279 Q1_tracks,61 Q1_tracks,84 Q1_tracks,133 Q1_tracks,172 Q1_tracks,324 Q1_tracks,340 Q1_tracks,389 Q1_tracks,410 Q1_tracks,421 Q1_tracks,714 Q1_tracks,749 Q1_tracks,784 Q1_tracks,933 Q1_tracks,975 Q1_tracks,1024 Q1_tracks,1030 Q1_tracks,1194 Q1_tracks,1213 Q1_tracks,1281 Q2_tracks,61 Q2_tracks,84 Q2_tracks,133 Q2_tracks,172 Q2_tracks,324 Q2_tracks,340 Q2_tracks,389 Q2_tracks,410 Q2_tracks,421 Q2_tracks,714 Q2_tracks,749 Q2_tracks,784 Q2_tracks,933 Q2_tracks,975 Q2_tracks,1024 Q2_tracks,1030 Q2_tracks,1194 Q2_tracks,1213 Q2_tracks,1281 Q3_tracks,61 Q3_tracks,84 Q3_tracks,133 Q3_tracks,172 Q3_tracks,324 Q3_tracks,340 Q3_tracks,389 Q3_tracks,410 Q3_tracks,421 Q3_tracks,714 Q3_tracks,749 Q3_tracks,784 Q3_tracks,933 Q3_tracks,975 Q3_tracks,1024 Q3_tracks,1030 Q3_tracks,1194 Q3_tracks,1213 Q3_tracks,1281 Starr_Bloom,40 Starr_Bloom,51 Starr_Bloom,84 Starr_Bloom,116 Starr_Bloom,222 Starr_Bloom_bind,37 Starr_Bloom_bind,48 Starr_Bloom_bind,78 Starr_Bloom_bind,110 Starr_Bloom_bind,216 Vero6_05hpi,82 Vero6_05hpi,97 Vero6_05hpi,200 Vero6_05hpi,330 Vero6_24hpi,82 Vero6_24hpi,97 Vero6_24hpi,200 Vero6_24hpi,330 abEscape,25 abEscape,70 abEscape,311 abEscape,375 abEscape,524 abEscape,559 abEscape,634 abEscape,674 abEscape,708 abEscape,751 abEscape,850 addgene,7 addgene,69 addgene,83 addgene,87 addgene,98 addgene,120 addgene,141 addgene,158 addgene,217 addgene,232 addgene,239 artic,62 artic,113 artic,139 artic,168 articV4,62 articV4,113 articV4,139 articV4,168 articV4_1,73 articV4_1,126 articV4_1,152 articV4_1,181 augustusGene,115 augustusGene,170 augustusGene,249 augustusGene,301 bloomEscMabAvg,29 bloomEscMabAvg,74 bloomEscMabAvg,315 bloomEscMabAvg,379 bloomEscMabAvg,528 bloomEscMabAvg,563 bloomEscMabAvg,638 bloomEscMabAvg,678 bloomEscMabAvg,712 bloomEscMabAvg,755 bloomEscMabAvg,854 bloomEscMax,35 bloomEscMax,80 bloomEscMax,321 bloomEscMax,385 bloomEscMax,534 bloomEscMax,569 bloomEscMax,644 bloomEscMax,684 bloomEscMax,718 bloomEscMax,761 bloomEscMax,860 bloomEscSerumAvg,30 bloomEscSerumAvg,75 bloomEscSerumAvg,316 bloomEscSerumAvg,380 bloomEscSerumAvg,529 bloomEscSerumAvg,564 bloomEscSerumAvg,639 bloomEscSerumAvg,679 bloomEscSerumAvg,713 bloomEscSerumAvg,756 bloomEscSerumAvg,855 bloomEscTop,33 bloomEscTop,78 bloomEscTop,319 bloomEscTop,383 bloomEscTop,532 bloomEscTop,567 bloomEscTop,642 bloomEscTop,682 bloomEscTop,716 bloomEscTop,759 bloomEscTop,858 bpmIggCovidSum,108 bpmIggCovidSum,135 bpmIggCovidSum,159 bpmIggCovidSum,163 bpmIggCovidSum,195 bpmIggCovidSum,229 bpmIggCovidSum,257 bpmIggCovidSum,268 bpmIggCovidSum,272 bpmIggCovidSum,274 bpmIggCovidSum,339 bpmIggCovidSum,365 bpmIggCovidSum,395 bpmIgmCovidSum,108 bpmIgmCovidSum,135 bpmIgmCovidSum,159 bpmIgmCovidSum,163 bpmIgmCovidSum,195 bpmIgmCovidSum,229 bpmIgmCovidSum,257 bpmIgmCovidSum,268 bpmIgmCovidSum,272 bpmIgmCovidSum,274 bpmIgmCovidSum,339 bpmIgmCovidSum,365 bpmIgmCovidSum,395 cas13Crispr,31 cas13Crispr,58 cas13Crispr,96 cas13Crispr,141 cas13Crispr,193 cas13Crispr,240 cas13Crispr,264 cas13Crispr,295 cas13Crispr,300 cas13Crispr,325 cas13Crispr,328 cas13Crispr,341 cas13Crispr,398 cas13Crispr,424 cas13Crispr,453 cas13Crispr,515 cd8escape,124 cd8escape,145 cd8escape,170 contacts,54 contacts,69 contacts,100 contacts,174 contacts,217 contacts,261 contacts,270 contacts,326 contacts,352 contacts,381 cpgIslandExt,69 cpgIslandExt,103 cpgIslandExt,124 cpgIslandExt,139 cpgIslandExt,205 cpgIslandExt,283 cpgIslandExt,358 cpgIslandExt,365 cpgIslandExt,371 cpgIslandExtUnmasked,72 cpgIslandExtUnmasked,106 cpgIslandExtUnmasked,127 cpgIslandExtUnmasked,142 cpgIslandExtUnmasked,208 cpgIslandExtUnmasked,286 cpgIslandExtUnmasked,361 cpgIslandExtUnmasked,368 cpgIslandExtUnmasked,374 cpgIslandSuper,69 cpgIslandSuper,103 cpgIslandSuper,124 cpgIslandSuper,139 cpgIslandSuper,205 cpgIslandSuper,283 cpgIslandSuper,358 cpgIslandSuper,365 cpgIslandSuper,371 crisprDet,144 crisprDet,159 epitopes,53 epitopes,75 epitopes,147 epitopes,158 epitopes,190 epitopes,208 epitopes,223 epitopes,228 epitopes,238 epitopes,261 epitopes,335 escape,10 escape,17 escape,32 escape,77 escape,318 escape,382 escape,531 escape,566 escape,641 escape,681 escape,715 escape,758 escape,857 galaxyEna,61 galaxyEna,84 galaxyEna,133 galaxyEna,172 galaxyEna,324 galaxyEna,340 galaxyEna,389 galaxyEna,410 galaxyEna,421 galaxyEna,714 galaxyEna,749 galaxyEna,784 galaxyEna,933 galaxyEna,975 galaxyEna,1024 galaxyEna,1030 galaxyEna,1194 galaxyEna,1213 galaxyEna,1281 galaxyEnaQ0Ba-1,57 galaxyEnaQ0Ba-1,80 galaxyEnaQ0Ba-1,129 galaxyEnaQ0Ba-1,168 galaxyEnaQ0Ba-1,320 galaxyEnaQ0Ba-1,336 galaxyEnaQ0Ba-1,385 galaxyEnaQ0Ba-1,406 galaxyEnaQ0Ba-1,417 galaxyEnaQ0Ba-1,710 galaxyEnaQ0Ba-1,745 galaxyEnaQ0Ba-1,780 galaxyEnaQ0Ba-1,929 galaxyEnaQ0Ba-1,971 galaxyEnaQ0Ba-1,1020 galaxyEnaQ0Ba-1,1026 galaxyEnaQ0Ba-1,1190 galaxyEnaQ0Ba-1,1209 galaxyEnaQ0Ba-1,1277 galaxyEnaQ0Ba-1-1,57 galaxyEnaQ0Ba-1-1,80 galaxyEnaQ0Ba-1-1,129 galaxyEnaQ0Ba-1-1,168 galaxyEnaQ0Ba-1-1,320 galaxyEnaQ0Ba-1-1,336 galaxyEnaQ0Ba-1-1,385 galaxyEnaQ0Ba-1-1,406 galaxyEnaQ0Ba-1-1,417 galaxyEnaQ0Ba-1-1,710 galaxyEnaQ0Ba-1-1,745 galaxyEnaQ0Ba-1-1,780 galaxyEnaQ0Ba-1-1,929 galaxyEnaQ0Ba-1-1,971 galaxyEnaQ0Ba-1-1,1020 galaxyEnaQ0Ba-1-1,1026 galaxyEnaQ0Ba-1-1,1190 galaxyEnaQ0Ba-1-1,1209 galaxyEnaQ0Ba-1-1,1277 galaxyEnaQ0Ba-1-1-11,57 galaxyEnaQ0Ba-1-1-11,80 galaxyEnaQ0Ba-1-1-11,129 galaxyEnaQ0Ba-1-1-11,168 galaxyEnaQ0Ba-1-1-11,320 galaxyEnaQ0Ba-1-1-11,336 galaxyEnaQ0Ba-1-1-11,385 galaxyEnaQ0Ba-1-1-11,406 galaxyEnaQ0Ba-1-1-11,417 galaxyEnaQ0Ba-1-1-11,710 galaxyEnaQ0Ba-1-1-11,745 galaxyEnaQ0Ba-1-1-11,780 galaxyEnaQ0Ba-1-1-11,929 galaxyEnaQ0Ba-1-1-11,971 galaxyEnaQ0Ba-1-1-11,1020 galaxyEnaQ0Ba-1-1-11,1026 galaxyEnaQ0Ba-1-1-11,1190 galaxyEnaQ0Ba-1-1-11,1209 galaxyEnaQ0Ba-1-1-11,1277 galaxyEnaQ0Ba-1-17,57 galaxyEnaQ0Ba-1-17,80 galaxyEnaQ0Ba-1-17,129 galaxyEnaQ0Ba-1-17,168 galaxyEnaQ0Ba-1-17,320 galaxyEnaQ0Ba-1-17,336 galaxyEnaQ0Ba-1-17,385 galaxyEnaQ0Ba-1-17,406 galaxyEnaQ0Ba-1-17,417 galaxyEnaQ0Ba-1-17,710 galaxyEnaQ0Ba-1-17,745 galaxyEnaQ0Ba-1-17,780 galaxyEnaQ0Ba-1-17,929 galaxyEnaQ0Ba-1-17,971 galaxyEnaQ0Ba-1-17,1020 galaxyEnaQ0Ba-1-17,1026 galaxyEnaQ0Ba-1-17,1190 galaxyEnaQ0Ba-1-17,1209 galaxyEnaQ0Ba-1-17,1277 galaxyEnaQ0Ba-2,57 galaxyEnaQ0Ba-2,80 galaxyEnaQ0Ba-2,129 galaxyEnaQ0Ba-2,168 galaxyEnaQ0Ba-2,320 galaxyEnaQ0Ba-2,336 galaxyEnaQ0Ba-2,385 galaxyEnaQ0Ba-2,406 galaxyEnaQ0Ba-2,417 galaxyEnaQ0Ba-2,710 galaxyEnaQ0Ba-2,745 galaxyEnaQ0Ba-2,780 galaxyEnaQ0Ba-2,929 galaxyEnaQ0Ba-2,971 galaxyEnaQ0Ba-2,1020 galaxyEnaQ0Ba-2,1026 galaxyEnaQ0Ba-2,1190 galaxyEnaQ0Ba-2,1209 galaxyEnaQ0Ba-2,1277 galaxyEnaQ1Ay-4,57 galaxyEnaQ1Ay-4,80 galaxyEnaQ1Ay-4,129 galaxyEnaQ1Ay-4,168 galaxyEnaQ1Ay-4,320 galaxyEnaQ1Ay-4,336 galaxyEnaQ1Ay-4,385 galaxyEnaQ1Ay-4,406 galaxyEnaQ1Ay-4,417 galaxyEnaQ1Ay-4,710 galaxyEnaQ1Ay-4,745 galaxyEnaQ1Ay-4,780 galaxyEnaQ1Ay-4,929 galaxyEnaQ1Ay-4,971 galaxyEnaQ1Ay-4,1020 galaxyEnaQ1Ay-4,1026 galaxyEnaQ1Ay-4,1190 galaxyEnaQ1Ay-4,1209 galaxyEnaQ1Ay-4,1277 galaxyEnaQ1Ay-4-2,57 galaxyEnaQ1Ay-4-2,80 galaxyEnaQ1Ay-4-2,129 galaxyEnaQ1Ay-4-2,168 galaxyEnaQ1Ay-4-2,320 galaxyEnaQ1Ay-4-2,336 galaxyEnaQ1Ay-4-2,385 galaxyEnaQ1Ay-4-2,406 galaxyEnaQ1Ay-4-2,417 galaxyEnaQ1Ay-4-2,710 galaxyEnaQ1Ay-4-2,745 galaxyEnaQ1Ay-4-2,780 galaxyEnaQ1Ay-4-2,929 galaxyEnaQ1Ay-4-2,971 galaxyEnaQ1Ay-4-2,1020 galaxyEnaQ1Ay-4-2,1026 galaxyEnaQ1Ay-4-2,1190 galaxyEnaQ1Ay-4-2,1209 galaxyEnaQ1Ay-4-2,1277 galaxyEnaQ1Ay-4-2-2,57 galaxyEnaQ1Ay-4-2-2,80 galaxyEnaQ1Ay-4-2-2,129 galaxyEnaQ1Ay-4-2-2,168 galaxyEnaQ1Ay-4-2-2,320 galaxyEnaQ1Ay-4-2-2,336 galaxyEnaQ1Ay-4-2-2,385 galaxyEnaQ1Ay-4-2-2,406 galaxyEnaQ1Ay-4-2-2,417 galaxyEnaQ1Ay-4-2-2,710 galaxyEnaQ1Ay-4-2-2,745 galaxyEnaQ1Ay-4-2-2,780 galaxyEnaQ1Ay-4-2-2,929 galaxyEnaQ1Ay-4-2-2,971 galaxyEnaQ1Ay-4-2-2,1020 galaxyEnaQ1Ay-4-2-2,1026 galaxyEnaQ1Ay-4-2-2,1190 galaxyEnaQ1Ay-4-2-2,1209 galaxyEnaQ1Ay-4-2-2,1277 galaxyEnaQ1Ay-43,57 galaxyEnaQ1Ay-43,80 galaxyEnaQ1Ay-43,129 galaxyEnaQ1Ay-43,168 galaxyEnaQ1Ay-43,320 galaxyEnaQ1Ay-43,336 galaxyEnaQ1Ay-43,385 galaxyEnaQ1Ay-43,406 galaxyEnaQ1Ay-43,417 galaxyEnaQ1Ay-43,710 galaxyEnaQ1Ay-43,745 galaxyEnaQ1Ay-43,780 galaxyEnaQ1Ay-43,929 galaxyEnaQ1Ay-43,971 galaxyEnaQ1Ay-43,1020 galaxyEnaQ1Ay-43,1026 galaxyEnaQ1Ay-43,1190 galaxyEnaQ1Ay-43,1209 galaxyEnaQ1Ay-43,1277 galaxyEnaQ1Ba-1-17,57 galaxyEnaQ1Ba-1-17,80 galaxyEnaQ1Ba-1-17,129 galaxyEnaQ1Ba-1-17,168 galaxyEnaQ1Ba-1-17,320 galaxyEnaQ1Ba-1-17,336 galaxyEnaQ1Ba-1-17,385 galaxyEnaQ1Ba-1-17,406 galaxyEnaQ1Ba-1-17,417 galaxyEnaQ1Ba-1-17,710 galaxyEnaQ1Ba-1-17,745 galaxyEnaQ1Ba-1-17,780 galaxyEnaQ1Ba-1-17,929 galaxyEnaQ1Ba-1-17,971 galaxyEnaQ1Ba-1-17,1020 galaxyEnaQ1Ba-1-17,1026 galaxyEnaQ1Ba-1-17,1190 galaxyEnaQ1Ba-1-17,1209 galaxyEnaQ1Ba-1-17,1277 galaxyEnaQ2Ay-120,57 galaxyEnaQ2Ay-120,80 galaxyEnaQ2Ay-120,129 galaxyEnaQ2Ay-120,168 galaxyEnaQ2Ay-120,320 galaxyEnaQ2Ay-120,336 galaxyEnaQ2Ay-120,385 galaxyEnaQ2Ay-120,406 galaxyEnaQ2Ay-120,417 galaxyEnaQ2Ay-120,710 galaxyEnaQ2Ay-120,745 galaxyEnaQ2Ay-120,780 galaxyEnaQ2Ay-120,929 galaxyEnaQ2Ay-120,971 galaxyEnaQ2Ay-120,1020 galaxyEnaQ2Ay-120,1026 galaxyEnaQ2Ay-120,1190 galaxyEnaQ2Ay-120,1209 galaxyEnaQ2Ay-120,1277 galaxyEnaQ2Ay-122,57 galaxyEnaQ2Ay-122,80 galaxyEnaQ2Ay-122,129 galaxyEnaQ2Ay-122,168 galaxyEnaQ2Ay-122,320 galaxyEnaQ2Ay-122,336 galaxyEnaQ2Ay-122,385 galaxyEnaQ2Ay-122,406 galaxyEnaQ2Ay-122,417 galaxyEnaQ2Ay-122,710 galaxyEnaQ2Ay-122,745 galaxyEnaQ2Ay-122,780 galaxyEnaQ2Ay-122,929 galaxyEnaQ2Ay-122,971 galaxyEnaQ2Ay-122,1020 galaxyEnaQ2Ay-122,1026 galaxyEnaQ2Ay-122,1190 galaxyEnaQ2Ay-122,1209 galaxyEnaQ2Ay-122,1277 galaxyEnaQ2Ay-4,57 galaxyEnaQ2Ay-4,80 galaxyEnaQ2Ay-4,129 galaxyEnaQ2Ay-4,168 galaxyEnaQ2Ay-4,320 galaxyEnaQ2Ay-4,336 galaxyEnaQ2Ay-4,385 galaxyEnaQ2Ay-4,406 galaxyEnaQ2Ay-4,417 galaxyEnaQ2Ay-4,710 galaxyEnaQ2Ay-4,745 galaxyEnaQ2Ay-4,780 galaxyEnaQ2Ay-4,929 galaxyEnaQ2Ay-4,971 galaxyEnaQ2Ay-4,1020 galaxyEnaQ2Ay-4,1026 galaxyEnaQ2Ay-4,1190 galaxyEnaQ2Ay-4,1209 galaxyEnaQ2Ay-4,1277 galaxyEnaQ2Ay-5,57 galaxyEnaQ2Ay-5,80 galaxyEnaQ2Ay-5,129 galaxyEnaQ2Ay-5,168 galaxyEnaQ2Ay-5,320 galaxyEnaQ2Ay-5,336 galaxyEnaQ2Ay-5,385 galaxyEnaQ2Ay-5,406 galaxyEnaQ2Ay-5,417 galaxyEnaQ2Ay-5,710 galaxyEnaQ2Ay-5,745 galaxyEnaQ2Ay-5,780 galaxyEnaQ2Ay-5,929 galaxyEnaQ2Ay-5,971 galaxyEnaQ2Ay-5,1020 galaxyEnaQ2Ay-5,1026 galaxyEnaQ2Ay-5,1190 galaxyEnaQ2Ay-5,1209 galaxyEnaQ2Ay-5,1277 galaxyEnaQ2Ay-6,57 galaxyEnaQ2Ay-6,80 galaxyEnaQ2Ay-6,129 galaxyEnaQ2Ay-6,168 galaxyEnaQ2Ay-6,320 galaxyEnaQ2Ay-6,336 galaxyEnaQ2Ay-6,385 galaxyEnaQ2Ay-6,406 galaxyEnaQ2Ay-6,417 galaxyEnaQ2Ay-6,710 galaxyEnaQ2Ay-6,745 galaxyEnaQ2Ay-6,780 galaxyEnaQ2Ay-6,929 galaxyEnaQ2Ay-6,971 galaxyEnaQ2Ay-6,1020 galaxyEnaQ2Ay-6,1026 galaxyEnaQ2Ay-6,1190 galaxyEnaQ2Ay-6,1209 galaxyEnaQ2Ay-6,1277 galaxyEnaQ3Ay-4,57 galaxyEnaQ3Ay-4,80 galaxyEnaQ3Ay-4,129 galaxyEnaQ3Ay-4,168 galaxyEnaQ3Ay-4,320 galaxyEnaQ3Ay-4,336 galaxyEnaQ3Ay-4,385 galaxyEnaQ3Ay-4,406 galaxyEnaQ3Ay-4,417 galaxyEnaQ3Ay-4,710 galaxyEnaQ3Ay-4,745 galaxyEnaQ3Ay-4,780 galaxyEnaQ3Ay-4,929 galaxyEnaQ3Ay-4,971 galaxyEnaQ3Ay-4,1020 galaxyEnaQ3Ay-4,1026 galaxyEnaQ3Ay-4,1190 galaxyEnaQ3Ay-4,1209 galaxyEnaQ3Ay-4,1277 galaxyEnaQ3Ay-5,57 galaxyEnaQ3Ay-5,80 galaxyEnaQ3Ay-5,129 galaxyEnaQ3Ay-5,168 galaxyEnaQ3Ay-5,320 galaxyEnaQ3Ay-5,336 galaxyEnaQ3Ay-5,385 galaxyEnaQ3Ay-5,406 galaxyEnaQ3Ay-5,417 galaxyEnaQ3Ay-5,710 galaxyEnaQ3Ay-5,745 galaxyEnaQ3Ay-5,780 galaxyEnaQ3Ay-5,929 galaxyEnaQ3Ay-5,971 galaxyEnaQ3Ay-5,1020 galaxyEnaQ3Ay-5,1026 galaxyEnaQ3Ay-5,1190 galaxyEnaQ3Ay-5,1209 galaxyEnaQ3Ay-5,1277 galaxyEnaQ3Ay-9,57 galaxyEnaQ3Ay-9,80 galaxyEnaQ3Ay-9,129 galaxyEnaQ3Ay-9,168 galaxyEnaQ3Ay-9,320 galaxyEnaQ3Ay-9,336 galaxyEnaQ3Ay-9,385 galaxyEnaQ3Ay-9,406 galaxyEnaQ3Ay-9,417 galaxyEnaQ3Ay-9,710 galaxyEnaQ3Ay-9,745 galaxyEnaQ3Ay-9,780 galaxyEnaQ3Ay-9,929 galaxyEnaQ3Ay-9,971 galaxyEnaQ3Ay-9,1020 galaxyEnaQ3Ay-9,1026 galaxyEnaQ3Ay-9,1190 galaxyEnaQ3Ay-9,1209 galaxyEnaQ3Ay-9,1277 galaxyEnaQ3B-1-1-7,57 galaxyEnaQ3B-1-1-7,80 galaxyEnaQ3B-1-1-7,129 galaxyEnaQ3B-1-1-7,168 galaxyEnaQ3B-1-1-7,320 galaxyEnaQ3B-1-1-7,336 galaxyEnaQ3B-1-1-7,385 galaxyEnaQ3B-1-1-7,406 galaxyEnaQ3B-1-1-7,417 galaxyEnaQ3B-1-1-7,710 galaxyEnaQ3B-1-1-7,745 galaxyEnaQ3B-1-1-7,780 galaxyEnaQ3B-1-1-7,929 galaxyEnaQ3B-1-1-7,971 galaxyEnaQ3B-1-1-7,1020 galaxyEnaQ3B-1-1-7,1026 galaxyEnaQ3B-1-1-7,1190 galaxyEnaQ3B-1-1-7,1209 galaxyEnaQ3B-1-1-7,1277 galaxyEnaQ3B-1-617-2,57 galaxyEnaQ3B-1-617-2,80 galaxyEnaQ3B-1-617-2,129 galaxyEnaQ3B-1-617-2,168 galaxyEnaQ3B-1-617-2,320 galaxyEnaQ3B-1-617-2,336 galaxyEnaQ3B-1-617-2,385 galaxyEnaQ3B-1-617-2,406 galaxyEnaQ3B-1-617-2,417 galaxyEnaQ3B-1-617-2,710 galaxyEnaQ3B-1-617-2,745 galaxyEnaQ3B-1-617-2,780 galaxyEnaQ3B-1-617-2,929 galaxyEnaQ3B-1-617-2,971 galaxyEnaQ3B-1-617-2,1020 galaxyEnaQ3B-1-617-2,1026 galaxyEnaQ3B-1-617-2,1190 galaxyEnaQ3B-1-617-2,1209 galaxyEnaQ3B-1-617-2,1277 gc5BaseBw,48 genscan,95 genscan,105 genscan,114 genscan,145 genscan,171 gold,131 gordon2,61 gordon2,224 gordon2,227 gordon2,247 icshape,37 icshape,55 icshape,165 icshape,224 iedb,59 iedb,67 iedb,79 kimIvtCov,63 kimIvtCov,81 kimIvtCov,136 kimIvtCov,159 kimNp,107 kimRnaMod,63 kimRnaMod,66 kimRnaMod,70 kimRnaMod,90 kimRnaMod,160 kimRnaMod,186 kimRnaMod,215 kimRnaMod,232 kimTranscripts,69 kimTranscripts,107 kimTranscripts,190 kimTranscripts,277 kimTranscripts,377 kimTranscripts,403 kimTranscripts,433 kimTranscripts,450 mccoy,25 mccoy,70 mccoy,311 mccoy,375 mccoy,524 mccoy,559 mccoy,634 mccoy,674 mccoy,708 mccoy,751 mccoy,850 microdel,22 microdel,66 microdel,85 microdel,172 microdel,198 microdel,243 multiz7way,27 multiz7way,74 multiz7way,79 multiz7way,94 multiz7way,143 multiz7way,211 multiz7way,241 multiz7way,259 multiz7way,269 multiz7way,286 multiz7way,297 multiz7way,309 multiz7way,318 multiz7way,327 multiz7way,363 multiz7way,484 multiz7way,492 multiz7way,689 multiz7way,786 multiz7way,991 ncbiGeneBGP,80 ncbiGeneBGP,124 ncbiGeneBGP,148 ncbiGeneBGP,185 ncbiProducts,96 ncbiProducts,140 ncbiProducts,164 ncbiProducts,201 nextstrainClade,165 nextstrainClade,220 nextstrainClade,232 nextstrainFreq,120 nextstrainFreq,157 nextstrainFreq,253 nextstrainFreq,277 nextstrainFreq,300 nextstrainFreq,316 nextstrainFreq,353 nextstrainFreq,367 nextstrainGene,115 nextstrainGene,169 nextstrainGene,181 nextstrainParsimony,120 nextstrainParsimony,179 nextstrainParsimony,195 nextstrainParsimony,219 nextstrainParsimony,314 nextstrainParsimony,387 nextstrainParsimony,432 nextstrainSamples,92 nextstrainSamples,123 nextstrainSamples,179 nextstrainSamples,240 nextstrainSamples,286 nextstrainSamples,345 nextstrainSamples,430 nextstrainSamples,510 nextstrainSamples,543 nextstrainSamples,554 nextstrainSamples,579 nextstrainSamples,615 nextstrainSamples,624 nextstrainSamples,714 nextstrainSamples,797 nextstrainSamples,807 nextstrainSamples,816 nextstrainSamples,851 nextstrainSamples,909 nextstrainSamples,929 nextstrainSamples,952 nextstrainSamples,962 nextstrainSamples,978 pbm,108 pbm,135 pbm,159 pbm,163 pbm,195 pbm,229 pbm,257 pbm,268 pbm,272 pbm,274 pbm,339 pbm,365 pbm,395 pbmShanghai,91 pbmShanghai,165 pbmShanghai,192 pbmShanghai,242 pbmShanghai,247 pbmShanghai,256 pbmShanghai,274 pbmShanghai,280 pbmShanghai,376 pbmShanghai,456 pbmShanghai,478 pdb,35 phyloGenes,49 phyloGenes,117 phyloGenes,143 phyloGenes,180 phyloGenes,216 phyloGenes,239 phyloGenes,269 phyloGenes,320 phyloGenes,374 phyloGenes,400 phyloGenes,430 phyloGenes,460 phyloGenes,472 phyloGenes,506 pond,49 pond,76 pond,132 pond,195 pond,216 poranHla1,46 poranHla1,104 poranHla1,187 poranHla1,213 poranHla1,243 poranHla1,283 poranHla2,46 poranHla2,104 poranHla2,187 poranHla2,213 poranHla2,243 poranHla2,283 potPathoIndel,69 potPathoIndel,88 potPathoIndel,97 potPathoIndel,116 potPathoIndel,158 problematicSites,18 problematicSites,46 problematicSites,53 problematicSites,76 problematicSites,126 problematicSites,134 problematicSites,144 problematicSites,174 problematicSites,191 problematicSites,213 problematicSites,246 problematicSites,280 problematicSites,305 problematicSites,326 problematicSites,416 problematicSites,447 publicAnnots,33 publicAnnots,52 publicAnnots,57 publicAnnots,60 pyle,139 pyle,147 pyle,211 pyle,245 pyle,254 rapid,30 rapid,64 rapid,149 rapid,200 rapid,267 rapid,293 rapid,322 rappuoli,10 rappuoli,32 rappuoli,77 rappuoli,318 rappuoli,382 rappuoli,531 rappuoli,566 rappuoli,641 rappuoli,681 rappuoli,715 rappuoli,758 rappuoli,857 recomb,162 recomb,226 recomb,314 resist,25 resist,79 resist,125 resist,142 resist,158 resistPred,33 resistPred,149 resistPred,217 resistPred,234 resistPred,256 rfam,62 rfam,72 rfam,164 rnaStructRangan,33 rnaStructRangan,69 rosettaMhc,24 rosettaMhc,33 rosettaMhc,73 rosettaMhc,90 rosettaMhc,147 rosettaMhc,174 rosettaMhc,281 rosettaMhc,302 rosettaMhc,352 sarsCov2Phylo,66 sarsCov2Phylo,88 sarsCov2Phylo,349 sarsCov2Phylo,466 sarsCov2Phylo,552 sarsCov2Phylo,585 sarsCov2Phylo,649 sarsCov2Phylo,670 sarsCov2Phylo,749 sarsCov2Phylo,758 sarsCov2Phylo,783 sarsCov2Phylo,802 sarsCov2Phylo,857 sarsCov2Phylo,879 sarsCov2Phylo,902 sarsCov2Phylo,912 sarsCov2Phylo,959 sarsCov2Phylo,1008 sarsCov2PhyloPub,80 sarsCov2PhyloPub,101 sarsCov2PhyloPub,360 sarsCov2PhyloPub,495 sarsCov2PhyloPub,577 sarsCov2PhyloPub,612 sarsCov2PhyloPub,673 sarsCov2PhyloPub,694 sarsCov2PhyloPub,748 sarsCov2PhyloPub,766 sarsCov2PhyloPub,781 sarsCov2PhyloPub,952 sarsCov2PhyloPub,963 sarsCov2PhyloPub,985 sarsCov2PhyloPub,1008 sarsCov2PhyloPub,1018 sarsCov2PhyloPub,1079 sarsCov2PhyloPub,1128 simpleRepeat,81 spikeMuts,23 spikeMuts,33 spikeMuts,43 spikeMuts,48 spikeMuts,80 spikeMuts,163 spikeMuts,171 spikeMuts,175 spikeMuts,235 spikeMuts,240 spikeMuts,244 spikeMuts,262 spikeMuts,340 spikeMuts,357 strainCons119way,52 strainCons119way,91 strainCons119way,186 strainCons119way,255 strainCons119way,330 strainCons119way,344 strainCons119way,443 strainCons119way,492 strainCons119way,560 strainCons119way,590 strainCons119way,608 strainCons119way,618 strainCons119way,640 strainCons119way,655 strainCons119way,670 strainCons119way,705 strainCons119way,770 strainCons119way,834 strainCons119way,842 strainCons119way,1038 strainCons119way,1658 strainCons119way,1754 strainCons119way,1775 strainCons119way,1824 strainCons119way,1906 strainCons119way,1913 strainCons119way,2008 strainCons119way,2089 strainCons119way,2108 strainCons119way,2187 strainCons119way,2369 strainCons44way,49 strainCons44way,134 strainCons44way,203 strainCons44way,278 strainCons44way,292 strainCons44way,391 strainCons44way,440 strainCons44way,508 strainCons44way,538 strainCons44way,556 strainCons44way,566 strainCons44way,588 strainCons44way,603 strainCons44way,618 strainCons44way,653 strainCons44way,718 strainCons44way,782 strainCons44way,790 strainCons44way,986 strainCons44way,1253 strainCons44way,1349 strainCons44way,1370 strainCons44way,1419 strainCons44way,1501 strainCons44way,1508 strainCons44way,1603 strainCons44way,1684 strainCons44way,1703 strainCons44way,1782 strainCons44way,1964 strainCons44way,2265 swift,45 swift,138 swift,196 swift,222 swift,251 targets,139 targets,166 targets,188 targets,194 transcriptome,61 transcriptome,99 transcriptome,158 transcriptome,238 transcriptome,267 transcriptome,383 transcriptome,409 transcriptome,439 transcriptome,456 treangen,162 treangen,171 treangen,184 treangen,262 ucscToINSDC,22 ucscToRefSeq,17 unipCov2AliSwissprot,9 unipCov2AliSwissprot,27 unipCov2AliSwissprot,40 unipCov2AliSwissprot,47 unipCov2AliSwissprot,53 unipCov2AliSwissprot,118 unipCov2AliSwissprot,129 unipCov2AliSwissprot,155 unipCov2AliSwissprot,174 unipCov2AliSwissprot,196 unipCov2AliSwissprot,251 unipCov2AliSwissprot,312 unipCov2AliSwissprot,353 unipCov2AliSwissprot,385 unipCov2AliSwissprot,431 unipCov2Chain,26 unipCov2Chain,111 unipCov2Chain,130 unipCov2Chain,303 unipCov2Chain,335 unipCov2Chain,361 unipCov2Chain,368 unipCov2Chain,408 unipCov2Chain,427 unipCov2Chain,449 unipCov2Chain,481 unipCov2Chain,542 unipCov2Chain,583 unipCov2Chain,615 unipCov2Chain,660 unipCov2DisulfBond,22 unipCov2DisulfBond,107 unipCov2DisulfBond,126 unipCov2DisulfBond,299 unipCov2DisulfBond,331 unipCov2DisulfBond,357 unipCov2DisulfBond,364 unipCov2DisulfBond,404 unipCov2DisulfBond,423 unipCov2DisulfBond,445 unipCov2DisulfBond,477 unipCov2DisulfBond,538 unipCov2DisulfBond,579 unipCov2DisulfBond,611 unipCov2DisulfBond,656 unipCov2Domain,21 unipCov2Domain,106 unipCov2Domain,125 unipCov2Domain,298 unipCov2Domain,330 unipCov2Domain,356 unipCov2Domain,363 unipCov2Domain,403 unipCov2Domain,422 unipCov2Domain,444 unipCov2Domain,476 unipCov2Domain,537 unipCov2Domain,578 unipCov2Domain,610 unipCov2Domain,655 unipCov2Interest,28 unipCov2Interest,72 unipCov2Interest,84 unipCov2Interest,103 unipCov2Interest,125 unipCov2Interest,157 unipCov2Interest,218 unipCov2Interest,259 unipCov2Interest,314 unipCov2LocCytopl,21 unipCov2LocCytopl,106 unipCov2LocCytopl,125 unipCov2LocCytopl,298 unipCov2LocCytopl,330 unipCov2LocCytopl,356 unipCov2LocCytopl,363 unipCov2LocCytopl,403 unipCov2LocCytopl,422 unipCov2LocCytopl,444 unipCov2LocCytopl,476 unipCov2LocCytopl,537 unipCov2LocCytopl,578 unipCov2LocCytopl,610 unipCov2LocCytopl,655 unipCov2LocExtra,21 unipCov2LocExtra,106 unipCov2LocExtra,125 unipCov2LocExtra,298 unipCov2LocExtra,330 unipCov2LocExtra,356 unipCov2LocExtra,363 unipCov2LocExtra,403 unipCov2LocExtra,422 unipCov2LocExtra,444 unipCov2LocExtra,476 unipCov2LocExtra,537 unipCov2LocExtra,578 unipCov2LocExtra,610 unipCov2LocExtra,655 unipCov2LocSignal,22 unipCov2LocSignal,107 unipCov2LocSignal,126 unipCov2LocSignal,299 unipCov2LocSignal,331 unipCov2LocSignal,357 unipCov2LocSignal,364 unipCov2LocSignal,404 unipCov2LocSignal,423 unipCov2LocSignal,445 unipCov2LocSignal,477 unipCov2LocSignal,538 unipCov2LocSignal,579 unipCov2LocSignal,611 unipCov2LocSignal,656 unipCov2LocTransMemb,22 unipCov2LocTransMemb,107 unipCov2LocTransMemb,126 unipCov2LocTransMemb,299 unipCov2LocTransMemb,331 unipCov2LocTransMemb,357 unipCov2LocTransMemb,364 unipCov2LocTransMemb,404 unipCov2LocTransMemb,423 unipCov2LocTransMemb,445 unipCov2LocTransMemb,477 unipCov2LocTransMemb,538 unipCov2LocTransMemb,579 unipCov2LocTransMemb,611 unipCov2LocTransMemb,656 unipCov2Modif,25 unipCov2Modif,110 unipCov2Modif,129 unipCov2Modif,302 unipCov2Modif,334 unipCov2Modif,360 unipCov2Modif,367 unipCov2Modif,407 unipCov2Modif,426 unipCov2Modif,448 unipCov2Modif,480 unipCov2Modif,541 unipCov2Modif,582 unipCov2Modif,614 unipCov2Modif,659 unipCov2Mut,22 unipCov2Mut,107 unipCov2Mut,126 unipCov2Mut,299 unipCov2Mut,331 unipCov2Mut,357 unipCov2Mut,364 unipCov2Mut,404 unipCov2Mut,423 unipCov2Mut,445 unipCov2Mut,477 unipCov2Mut,538 unipCov2Mut,579 unipCov2Mut,611 unipCov2Mut,656 unipCov2Other,22 unipCov2Other,107 unipCov2Other,126 unipCov2Other,299 unipCov2Other,331 unipCov2Other,357 unipCov2Other,364 unipCov2Other,404 unipCov2Other,423 unipCov2Other,445 unipCov2Other,477 unipCov2Other,538 unipCov2Other,579 unipCov2Other,611 unipCov2Other,656 unipCov2Repeat,20 unipCov2Repeat,105 unipCov2Repeat,124 unipCov2Repeat,297 unipCov2Repeat,329 unipCov2Repeat,355 unipCov2Repeat,362 unipCov2Repeat,402 unipCov2Repeat,421 unipCov2Repeat,443 unipCov2Repeat,475 unipCov2Repeat,536 unipCov2Repeat,577 unipCov2Repeat,609 unipCov2Repeat,654 unipCov2Struct,24 unipCov2Struct,109 unipCov2Struct,128 unipCov2Struct,301 unipCov2Struct,333 unipCov2Struct,359 unipCov2Struct,366 unipCov2Struct,406 unipCov2Struct,425 unipCov2Struct,447 unipCov2Struct,479 unipCov2Struct,540 unipCov2Struct,581 unipCov2Struct,613 unipCov2Struct,658 vaccines,23 vaccines,107 vaccines,169 vaccines,245 vaccines,251 vaccines,449 vaccines,616 variantMuts,17 variantMuts,86 variantMuts,123 variantMuts,804 variantMuts,810 variantMuts,834 variantMuts,943 variantMuts,950 variantMuts,1089 variantMuts,1266 varskip,68 varskip,119 varskip,145 varskip,174 weizmanOrfs,88 weizmanOrfs,103 weizmanOrfs,206 weizmanOrfs,336 windowmaskerSdust,47 todd treangen,8 together Q0_tracks,381 Q0_tracks,968 Q1_tracks,383 Q1_tracks,970 Q2_tracks,383 Q2_tracks,970 Q3_tracks,383 Q3_tracks,970 galaxyEna,383 galaxyEna,970 galaxyEnaQ0Ba-1,379 galaxyEnaQ0Ba-1,966 galaxyEnaQ0Ba-1-1,379 galaxyEnaQ0Ba-1-1,966 galaxyEnaQ0Ba-1-1-11,379 galaxyEnaQ0Ba-1-1-11,966 galaxyEnaQ0Ba-1-17,379 galaxyEnaQ0Ba-1-17,966 galaxyEnaQ0Ba-2,379 galaxyEnaQ0Ba-2,966 galaxyEnaQ1Ay-4,379 galaxyEnaQ1Ay-4,966 galaxyEnaQ1Ay-4-2,379 galaxyEnaQ1Ay-4-2,966 galaxyEnaQ1Ay-4-2-2,379 galaxyEnaQ1Ay-4-2-2,966 galaxyEnaQ1Ay-43,379 galaxyEnaQ1Ay-43,966 galaxyEnaQ1Ba-1-17,379 galaxyEnaQ1Ba-1-17,966 galaxyEnaQ2Ay-120,379 galaxyEnaQ2Ay-120,966 galaxyEnaQ2Ay-122,379 galaxyEnaQ2Ay-122,966 galaxyEnaQ2Ay-4,379 galaxyEnaQ2Ay-4,966 galaxyEnaQ2Ay-5,379 galaxyEnaQ2Ay-5,966 galaxyEnaQ2Ay-6,379 galaxyEnaQ2Ay-6,966 galaxyEnaQ3Ay-4,379 galaxyEnaQ3Ay-4,966 galaxyEnaQ3Ay-5,379 galaxyEnaQ3Ay-5,966 galaxyEnaQ3Ay-9,379 galaxyEnaQ3Ay-9,966 galaxyEnaQ3B-1-1-7,379 galaxyEnaQ3B-1-1-7,966 galaxyEnaQ3B-1-617-2,379 galaxyEnaQ3B-1-617-2,966 kimNp,93 tomer primers,374 too nextstrainSamples,538 pond,65 variantMuts,818 tool Calu3_07hpi,327 IgG_Z-score-_COVID-19_patients,303 IgG_Z-score-_COVID-19_patients,336 IgG_Z-score-_COVID-19_patients,351 IgM_Z-score-_COVID-19_patients,303 IgM_Z-score-_COVID-19_patients,336 IgM_Z-score-_COVID-19_patients,351 ORFs,325 PhyloCSF_smooth,645 Starr_Bloom,219 Starr_Bloom_bind,213 Vero6_05hpi,327 Vero6_24hpi,327 abEscape,671 artic,86 artic,119 artic,134 articV4,86 articV4,119 articV4,134 articV4_1,99 articV4_1,132 articV4_1,147 bloomEscMabAvg,675 bloomEscMax,681 bloomEscSerumAvg,676 bloomEscTop,679 bpmIggCovidSum,312 bpmIggCovidSum,345 bpmIggCovidSum,360 bpmIgmCovidSum,312 bpmIgmCovidSum,345 bpmIgmCovidSum,360 cas13Crispr,22 cas13Crispr,119 cas13Crispr,371 cas13Crispr,404 cas13Crispr,419 contacts,299 contacts,332 contacts,347 escape,678 kimRnaMod,133 kimRnaMod,166 kimRnaMod,181 kimTranscripts,350 kimTranscripts,383 kimTranscripts,398 mccoy,671 microdel,158 ncbiGeneBGP,85 ncbiGeneBGP,119 ncbiProducts,101 ncbiProducts,135 pbm,312 pbm,345 pbm,360 pbmShanghai,429 pbmShanghai,462 phyloGenes,347 phyloGenes,380 phyloGenes,395 poranHla1,160 poranHla1,193 poranHla1,208 poranHla2,160 poranHla2,193 poranHla2,208 rapid,240 rapid,273 rapid,288 rappuoli,678 swift,169 swift,202 swift,217 transcriptome,254 transcriptome,356 transcriptome,389 transcriptome,404 unipCov2AliSwissprot,317 unipCov2AliSwissprot,348 unipCov2Chain,547 unipCov2Chain,578 unipCov2DisulfBond,543 unipCov2DisulfBond,574 unipCov2Domain,542 unipCov2Domain,573 unipCov2Interest,223 unipCov2Interest,254 unipCov2LocCytopl,542 unipCov2LocCytopl,573 unipCov2LocExtra,542 unipCov2LocExtra,573 unipCov2LocSignal,543 unipCov2LocSignal,574 unipCov2LocTransMemb,543 unipCov2LocTransMemb,574 unipCov2Modif,546 unipCov2Modif,577 unipCov2Mut,543 unipCov2Mut,574 unipCov2Other,543 unipCov2Other,574 unipCov2Repeat,541 unipCov2Repeat,572 unipCov2Struct,545 unipCov2Struct,576 vaccines,407 variantMuts,857 varskip,92 varskip,125 varskip,140 weizmanOrfs,333 windowmaskerSdust,24 toole sarsCov2Phylo,939 sarsCov2Phylo,989 sarsCov2PhyloPub,1059 sarsCov2PhyloPub,1109 variantMuts,1246 variantMuts,1343 toolkit windowmaskerSdust,31 windowmaskerSdust,38 tools Calu3_07hpi,213 ORFs,211 Q0_tracks,190 Q1_tracks,192 Q2_tracks,192 Q3_tracks,192 Vero6_05hpi,213 Vero6_24hpi,213 epitopes,189 galaxyEna,192 galaxyEnaQ0Ba-1,188 galaxyEnaQ0Ba-1-1,188 galaxyEnaQ0Ba-1-1-11,188 galaxyEnaQ0Ba-1-17,188 galaxyEnaQ0Ba-2,188 galaxyEnaQ1Ay-4,188 galaxyEnaQ1Ay-4-2,188 galaxyEnaQ1Ay-4-2-2,188 galaxyEnaQ1Ay-43,188 galaxyEnaQ1Ba-1-17,188 galaxyEnaQ2Ay-120,188 galaxyEnaQ2Ay-122,188 galaxyEnaQ2Ay-4,188 galaxyEnaQ2Ay-5,188 galaxyEnaQ2Ay-6,188 galaxyEnaQ3Ay-4,188 galaxyEnaQ3Ay-5,188 galaxyEnaQ3Ay-9,188 galaxyEnaQ3B-1-1-7,188 galaxyEnaQ3B-1-617-2,188 multiz7way,48 multiz7way,823 multiz7way,886 rosettaMhc,23 strainCons119way,141 strainCons119way,2201 strainCons119way,2264 strainCons44way,89 strainCons44way,1796 strainCons44way,1859 variantMuts,904 weizmanOrfs,219 toolset multiz7way,758 strainCons119way,1518 strainCons44way,1188 top Q0_tracks,5 Q0_tracks,1093 Q1_tracks,5 Q1_tracks,1095 Q2_tracks,5 Q2_tracks,1095 Q3_tracks,5 Q3_tracks,1095 contacts,85 cpgIslandExt,220 cpgIslandExtUnmasked,223 cpgIslandSuper,220 galaxyEna,1095 galaxyEnaQ0Ba-1,1091 galaxyEnaQ0Ba-1-1,1091 galaxyEnaQ0Ba-1-1-11,1091 galaxyEnaQ0Ba-1-17,1091 galaxyEnaQ0Ba-2,1091 galaxyEnaQ1Ay-4,1091 galaxyEnaQ1Ay-4-2,1091 galaxyEnaQ1Ay-4-2-2,1091 galaxyEnaQ1Ay-43,1091 galaxyEnaQ1Ba-1-17,1091 galaxyEnaQ2Ay-120,1091 galaxyEnaQ2Ay-122,1091 galaxyEnaQ2Ay-4,1091 galaxyEnaQ2Ay-5,1091 galaxyEnaQ2Ay-6,1091 galaxyEnaQ3Ay-4,1091 galaxyEnaQ3Ay-5,1091 galaxyEnaQ3Ay-9,1091 galaxyEnaQ3B-1-1-7,1091 galaxyEnaQ3B-1-617-2,1091 kimNp,99 multiz7way,441 multiz7way,768 nextstrainSamples,421 sarsCov2Phylo,457 sarsCov2PhyloPub,486 strainCons119way,791 strainCons119way,1528 strainCons44way,739 strainCons44way,1198 unipCov2AliSwissprot,170 unipCov2Chain,423 unipCov2DisulfBond,419 unipCov2Domain,418 unipCov2Interest,99 unipCov2LocCytopl,418 unipCov2LocExtra,418 unipCov2LocSignal,419 unipCov2LocTransMemb,419 unipCov2Modif,422 unipCov2Mut,419 unipCov2Other,419 unipCov2Repeat,417 unipCov2Struct,421 topic crisprDet,28 topological unipCov2Chain,189 unipCov2DisulfBond,185 unipCov2Domain,184 unipCov2LocCytopl,184 unipCov2LocExtra,184 unipCov2LocSignal,185 unipCov2LocTransMemb,185 unipCov2Modif,188 unipCov2Mut,185 unipCov2Other,185 unipCov2Repeat,183 unipCov2Struct,187 topology strainCons119way,1687 strainCons44way,1282 tor2 multiz7way,703 tortorici Starr_Bloom,254 Starr_Bloom_bind,248 total A_120Total,8 A_21Total,8 A_45Total,8 B_113Total,8 B_26Total,8 COV2-2050Total,3 COV2-2050Total,7 COV2-2082Total,3 COV2-2082Total,7 COV2-2094Total,3 COV2-2094Total,7 COV2-2096Total,3 COV2-2096Total,7 COV2-2165Total,3 COV2-2165Total,7 COV2-2479Total,3 COV2-2479Total,7 COV2-2499Total,3 COV2-2499Total,7 COV2-2677Total,3 COV2-2677Total,7 COV2-2832Total,3 COV2-2832Total,7 C_104Total,8 C_32Total,8 D_33Total,8 D_76Total,8 E_104Total,8 E_28Total,8 F_115Total,8 F_48Total,8 G_18Total,8 G_94Total,8 H_152Total,8 H_61Total,8 I_102Total,8 I_26Total,8 J_121Total,8 J_15Total,8 K_103Total,8 K_29Total,8 LY-CoV016Total,3 LY-CoV016Total,7 PhyloCSF_smooth,208 PhyloCSFpower,223 REGN10933-REGN10987Total,3 REGN10933-REGN10987Total,7 REGN10933Total,3 REGN10933Total,7 REGN10987Total,3 REGN10987Total,7 abEscape,438 abEscape,616 bloomEscMabAvg,442 bloomEscMabAvg,620 bloomEscMax,448 bloomEscMax,626 bloomEscSerumAvg,443 bloomEscSerumAvg,621 bloomEscTop,446 bloomEscTop,624 bloomEscTotal,2 bloomEscTotal,10 escape,445 escape,623 mccoy,438 mccoy,616 pbmShanghai,83 rCR3022Total,3 rCR3022Total,7 rappuoli,445 rappuoli,623 rosettaMhc,278 toward rosettaMhc,16 track Calu3_07hpi,19 Calu3_07hpi,38 Calu3_07hpi,59 IgG_Z-score-_COVID-19_patients,16 IgG_Z-score-_COVID-19_patients,70 IgG_Z-score-_COVID-19_patients,122 IgM_Z-score-_COVID-19_patients,16 IgM_Z-score-_COVID-19_patients,70 IgM_Z-score-_COVID-19_patients,122 ORFs,17 ORFs,36 ORFs,57 PhyloCSF_smooth,128 PhyloCSF_smooth,182 PhyloCSFpower,18 PhyloCSFpower,143 PhyloCSFpower,197 Q0_tracks,20 Q0_tracks,274 Q0_tracks,336 Q0_tracks,556 Q0_tracks,1103 Q1_tracks,22 Q1_tracks,276 Q1_tracks,338 Q1_tracks,558 Q1_tracks,1105 Q2_tracks,22 Q2_tracks,276 Q2_tracks,338 Q2_tracks,558 Q2_tracks,1105 Q3_tracks,22 Q3_tracks,276 Q3_tracks,338 Q3_tracks,558 Q3_tracks,1105 Starr_Bloom,17 Starr_Bloom_bind,18 Vero6_05hpi,19 Vero6_05hpi,38 Vero6_05hpi,59 Vero6_24hpi,19 Vero6_24hpi,38 Vero6_24hpi,59 abEscape,20 abEscape,426 abEscape,471 addgene,15 addgene,236 addgene,248 artic,15 articV4,15 articV4_1,15 augustusGene,14 augustusGene,107 bloomEscMabAvg,24 bloomEscMabAvg,430 bloomEscMabAvg,475 bloomEscMax,30 bloomEscMax,436 bloomEscMax,481 bloomEscSerumAvg,25 bloomEscSerumAvg,431 bloomEscSerumAvg,476 bloomEscTop,28 bloomEscTop,434 bloomEscTop,479 bpmIggCovidSum,25 bpmIggCovidSum,79 bpmIggCovidSum,131 bpmIgmCovidSum,25 bpmIgmCovidSum,79 bpmIgmCovidSum,131 cas13Crispr,11 cas13Crispr,473 cd8escape,115 contacts,19 contacts,397 cpgIslandExt,173 cpgIslandExt,202 cpgIslandExt,216 cpgIslandExt,314 cpgIslandExt,318 cpgIslandExt,402 cpgIslandExt,492 cpgIslandExt,586 cpgIslandExtUnmasked,176 cpgIslandExtUnmasked,205 cpgIslandExtUnmasked,219 cpgIslandExtUnmasked,317 cpgIslandExtUnmasked,321 cpgIslandExtUnmasked,405 cpgIslandExtUnmasked,495 cpgIslandExtUnmasked,589 cpgIslandSuper,173 cpgIslandSuper,202 cpgIslandSuper,216 cpgIslandSuper,314 cpgIslandSuper,318 cpgIslandSuper,402 cpgIslandSuper,492 cpgIslandSuper,586 crisprDet,11 epitopes,14 escape,27 escape,433 escape,478 galaxyEna,22 galaxyEna,276 galaxyEna,338 galaxyEna,558 galaxyEna,1105 galaxyEnaQ0Ba-1,18 galaxyEnaQ0Ba-1,272 galaxyEnaQ0Ba-1,334 galaxyEnaQ0Ba-1,554 galaxyEnaQ0Ba-1,1101 galaxyEnaQ0Ba-1-1,18 galaxyEnaQ0Ba-1-1,272 galaxyEnaQ0Ba-1-1,334 galaxyEnaQ0Ba-1-1,554 galaxyEnaQ0Ba-1-1,1101 galaxyEnaQ0Ba-1-1-11,18 galaxyEnaQ0Ba-1-1-11,272 galaxyEnaQ0Ba-1-1-11,334 galaxyEnaQ0Ba-1-1-11,554 galaxyEnaQ0Ba-1-1-11,1101 galaxyEnaQ0Ba-1-17,18 galaxyEnaQ0Ba-1-17,272 galaxyEnaQ0Ba-1-17,334 galaxyEnaQ0Ba-1-17,554 galaxyEnaQ0Ba-1-17,1101 galaxyEnaQ0Ba-2,18 galaxyEnaQ0Ba-2,272 galaxyEnaQ0Ba-2,334 galaxyEnaQ0Ba-2,554 galaxyEnaQ0Ba-2,1101 galaxyEnaQ1Ay-4,18 galaxyEnaQ1Ay-4,272 galaxyEnaQ1Ay-4,334 galaxyEnaQ1Ay-4,554 galaxyEnaQ1Ay-4,1101 galaxyEnaQ1Ay-4-2,18 galaxyEnaQ1Ay-4-2,272 galaxyEnaQ1Ay-4-2,334 galaxyEnaQ1Ay-4-2,554 galaxyEnaQ1Ay-4-2,1101 galaxyEnaQ1Ay-4-2-2,18 galaxyEnaQ1Ay-4-2-2,272 galaxyEnaQ1Ay-4-2-2,334 galaxyEnaQ1Ay-4-2-2,554 galaxyEnaQ1Ay-4-2-2,1101 galaxyEnaQ1Ay-43,18 galaxyEnaQ1Ay-43,272 galaxyEnaQ1Ay-43,334 galaxyEnaQ1Ay-43,554 galaxyEnaQ1Ay-43,1101 galaxyEnaQ1Ba-1-17,18 galaxyEnaQ1Ba-1-17,272 galaxyEnaQ1Ba-1-17,334 galaxyEnaQ1Ba-1-17,554 galaxyEnaQ1Ba-1-17,1101 galaxyEnaQ2Ay-120,18 galaxyEnaQ2Ay-120,272 galaxyEnaQ2Ay-120,334 galaxyEnaQ2Ay-120,554 galaxyEnaQ2Ay-120,1101 galaxyEnaQ2Ay-122,18 galaxyEnaQ2Ay-122,272 galaxyEnaQ2Ay-122,334 galaxyEnaQ2Ay-122,554 galaxyEnaQ2Ay-122,1101 galaxyEnaQ2Ay-4,18 galaxyEnaQ2Ay-4,272 galaxyEnaQ2Ay-4,334 galaxyEnaQ2Ay-4,554 galaxyEnaQ2Ay-4,1101 galaxyEnaQ2Ay-5,18 galaxyEnaQ2Ay-5,272 galaxyEnaQ2Ay-5,334 galaxyEnaQ2Ay-5,554 galaxyEnaQ2Ay-5,1101 galaxyEnaQ2Ay-6,18 galaxyEnaQ2Ay-6,272 galaxyEnaQ2Ay-6,334 galaxyEnaQ2Ay-6,554 galaxyEnaQ2Ay-6,1101 galaxyEnaQ3Ay-4,18 galaxyEnaQ3Ay-4,272 galaxyEnaQ3Ay-4,334 galaxyEnaQ3Ay-4,554 galaxyEnaQ3Ay-4,1101 galaxyEnaQ3Ay-5,18 galaxyEnaQ3Ay-5,272 galaxyEnaQ3Ay-5,334 galaxyEnaQ3Ay-5,554 galaxyEnaQ3Ay-5,1101 galaxyEnaQ3Ay-9,18 galaxyEnaQ3Ay-9,272 galaxyEnaQ3Ay-9,334 galaxyEnaQ3Ay-9,554 galaxyEnaQ3Ay-9,1101 galaxyEnaQ3B-1-1-7,18 galaxyEnaQ3B-1-1-7,272 galaxyEnaQ3B-1-1-7,334 galaxyEnaQ3B-1-1-7,554 galaxyEnaQ3B-1-1-7,1101 galaxyEnaQ3B-1-617-2,18 galaxyEnaQ3B-1-617-2,272 galaxyEnaQ3B-1-617-2,334 galaxyEnaQ3B-1-617-2,554 galaxyEnaQ3B-1-617-2,1101 gap,9 gap,75 gc5BaseBw,15 gc5BaseBw,39 genscan,12 genscan,66 genscan,76 genscan,87 gold,10 gold,70 gold,140 gordon2,17 gordon2,219 gordon2,250 icshape,12 icshape,90 icshape,124 icshape,127 iedb,12 iedb,48 kimIvtCov,19 kimNp,20 kimNp,60 kimNp,102 kimRnaMod,28 kimTranscripts,20 kimTranscripts,309 kimTranscripts,458 mccoy,20 mccoy,426 mccoy,471 microdel,11 multiz7way,17 multiz7way,61 multiz7way,251 multiz7way,332 multiz7way,803 multiz7way,815 multiz7way,912 ncbiGeneBGP,15 ncbiGeneBGP,165 ncbiProducts,18 ncbiProducts,181 nextstrainClade,101 nextstrainClade,111 nextstrainClade,187 nextstrainFreq,80 nextstrainFreq,105 nextstrainFreq,179 nextstrainFreq,213 nextstrainFreq,216 nextstrainGene,73 nextstrainGene,78 nextstrainGene,88 nextstrainGene,137 nextstrainParsimony,246 nextstrainParsimony,271 nextstrainParsimony,349 nextstrainSamples,91 nextstrainSamples,150 nextstrainSamples,188 nextstrainSamples,212 nextstrainSamples,373 nextstrainSamples,493 nextstrainSamples,528 nextstrainSamples,548 pbm,25 pbm,79 pbm,131 pbmShanghai,28 pbmShanghai,111 pbmShanghai,188 pdb,15 phyloGenes,75 phyloGenes,150 phyloGenes,482 pond,18 pond,92 poranHla1,10 poranHla1,39 poranHla2,10 poranHla2,39 potPathoIndel,20 primers,13 primers,45 primers,324 primers,359 problematicSites,86 problematicSites,506 publicAnnots,15 publicAnnots,54 publicAnnots,62 pyle,16 rapid,17 rappuoli,27 rappuoli,433 rappuoli,478 recomb,15 recomb,41 recomb,281 resist,17 resistPred,25 resistPred,254 rfam,148 rnaStructRangan,13 rnaStructRangan,81 rosettaMhc,168 sarsCov2Phylo,21 sarsCov2Phylo,377 sarsCov2Phylo,520 sarsCov2Phylo,533 sarsCov2Phylo,540 sarsCov2Phylo,711 sarsCov2PhyloPub,19 sarsCov2PhyloPub,406 sarsCov2PhyloPub,545 sarsCov2PhyloPub,558 sarsCov2PhyloPub,565 simpleRepeat,13 spikeMuts,91 spikeMuts,120 spikeMuts,181 spikeMuts,259 spikeMuts,282 spikeMuts,291 spikeMuts,329 spikeMuts,382 strainCons119way,23 strainCons119way,43 strainCons119way,162 strainCons119way,402 strainCons119way,600 strainCons119way,675 strainCons119way,1713 strainCons119way,2130 strainCons119way,2181 strainCons119way,2193 strainCons119way,2290 strainCons44way,20 strainCons44way,40 strainCons44way,110 strainCons44way,350 strainCons44way,548 strainCons44way,623 strainCons44way,1308 strainCons44way,1725 strainCons44way,1776 strainCons44way,1788 strainCons44way,1885 strainCons44way,2252 swift,12 targets,13 transcriptome,12 transcriptome,180 transcriptome,234 transcriptome,281 transcriptome,464 treangen,17 treangen,86 treangen,107 treangen,138 treangen,166 treangen,180 ucscToINSDC,15 ucscToINSDC,47 ucscToRefSeq,10 ucscToRefSeq,41 unipCov2AliSwissprot,16 unipCov2AliSwissprot,254 unipCov2AliSwissprot,305 unipCov2AliSwissprot,402 unipCov2Chain,15 unipCov2Chain,58 unipCov2Chain,82 unipCov2Chain,104 unipCov2Chain,106 unipCov2Chain,119 unipCov2Chain,385 unipCov2Chain,484 unipCov2Chain,535 unipCov2Chain,632 unipCov2DisulfBond,11 unipCov2DisulfBond,54 unipCov2DisulfBond,78 unipCov2DisulfBond,100 unipCov2DisulfBond,102 unipCov2DisulfBond,115 unipCov2DisulfBond,381 unipCov2DisulfBond,480 unipCov2DisulfBond,531 unipCov2DisulfBond,628 unipCov2Domain,10 unipCov2Domain,53 unipCov2Domain,77 unipCov2Domain,99 unipCov2Domain,101 unipCov2Domain,114 unipCov2Domain,380 unipCov2Domain,479 unipCov2Domain,530 unipCov2Domain,627 unipCov2Interest,12 unipCov2Interest,160 unipCov2Interest,211 unipCov2Interest,285 unipCov2LocCytopl,10 unipCov2LocCytopl,53 unipCov2LocCytopl,77 unipCov2LocCytopl,99 unipCov2LocCytopl,101 unipCov2LocCytopl,114 unipCov2LocCytopl,380 unipCov2LocCytopl,479 unipCov2LocCytopl,530 unipCov2LocCytopl,627 unipCov2LocExtra,10 unipCov2LocExtra,53 unipCov2LocExtra,77 unipCov2LocExtra,99 unipCov2LocExtra,101 unipCov2LocExtra,114 unipCov2LocExtra,380 unipCov2LocExtra,479 unipCov2LocExtra,530 unipCov2LocExtra,627 unipCov2LocSignal,11 unipCov2LocSignal,54 unipCov2LocSignal,78 unipCov2LocSignal,100 unipCov2LocSignal,102 unipCov2LocSignal,115 unipCov2LocSignal,381 unipCov2LocSignal,480 unipCov2LocSignal,531 unipCov2LocSignal,628 unipCov2LocTransMemb,11 unipCov2LocTransMemb,54 unipCov2LocTransMemb,78 unipCov2LocTransMemb,100 unipCov2LocTransMemb,102 unipCov2LocTransMemb,115 unipCov2LocTransMemb,381 unipCov2LocTransMemb,480 unipCov2LocTransMemb,531 unipCov2LocTransMemb,628 unipCov2Modif,14 unipCov2Modif,57 unipCov2Modif,81 unipCov2Modif,103 unipCov2Modif,105 unipCov2Modif,118 unipCov2Modif,384 unipCov2Modif,483 unipCov2Modif,534 unipCov2Modif,631 unipCov2Mut,11 unipCov2Mut,54 unipCov2Mut,78 unipCov2Mut,100 unipCov2Mut,102 unipCov2Mut,115 unipCov2Mut,381 unipCov2Mut,480 unipCov2Mut,531 unipCov2Mut,628 unipCov2Other,11 unipCov2Other,54 unipCov2Other,78 unipCov2Other,100 unipCov2Other,102 unipCov2Other,115 unipCov2Other,381 unipCov2Other,480 unipCov2Other,531 unipCov2Other,628 unipCov2Repeat,9 unipCov2Repeat,52 unipCov2Repeat,76 unipCov2Repeat,98 unipCov2Repeat,100 unipCov2Repeat,113 unipCov2Repeat,379 unipCov2Repeat,478 unipCov2Repeat,529 unipCov2Repeat,626 unipCov2Struct,13 unipCov2Struct,56 unipCov2Struct,80 unipCov2Struct,102 unipCov2Struct,104 unipCov2Struct,117 unipCov2Struct,383 unipCov2Struct,482 unipCov2Struct,533 unipCov2Struct,630 vaccines,13 vaccines,116 vaccines,130 vaccines,164 vaccines,387 vaccines,638 variantMuts,26 variantMuts,68 variantMuts,161 variantMuts,185 variantMuts,224 variantMuts,721 variantMuts,743 variantMuts,983 variantMuts,1048 variantMuts,1081 variantMuts,1093 variantMuts,1102 varskip,15 weizmanOrfs,25 weizmanOrfs,44 weizmanOrfs,65 windowmaskerSdust,14 windowmaskerSdust,50 windowmaskerSdust,88 tracking Q0_tracks,280 Q1_tracks,282 Q2_tracks,282 Q3_tracks,282 galaxyEna,282 galaxyEnaQ0Ba-1,278 galaxyEnaQ0Ba-1-1,278 galaxyEnaQ0Ba-1-1-11,278 galaxyEnaQ0Ba-1-17,278 galaxyEnaQ0Ba-2,278 galaxyEnaQ1Ay-4,278 galaxyEnaQ1Ay-4-2,278 galaxyEnaQ1Ay-4-2-2,278 galaxyEnaQ1Ay-43,278 galaxyEnaQ1Ba-1-17,278 galaxyEnaQ2Ay-120,278 galaxyEnaQ2Ay-122,278 galaxyEnaQ2Ay-4,278 galaxyEnaQ2Ay-5,278 galaxyEnaQ2Ay-6,278 galaxyEnaQ3Ay-4,278 galaxyEnaQ3Ay-5,278 galaxyEnaQ3Ay-9,278 galaxyEnaQ3B-1-1-7,278 galaxyEnaQ3B-1-617-2,278 nextstrainClade,262 nextstrainFreq,397 nextstrainGene,211 nextstrainParsimony,464 nextstrainSamples,1017 tracks Calu3_07hpi,36 Calu3_07hpi,66 IgG_Z-score-_COVID-19_patients,97 IgG_Z-score-_COVID-19_patients,185 IgG_Z-score-_COVID-19_patients,270 IgM_Z-score-_COVID-19_patients,97 IgM_Z-score-_COVID-19_patients,185 IgM_Z-score-_COVID-19_patients,270 ORFs,34 ORFs,64 PhyloCSF_smooth,7 PhyloCSF_smooth,244 PhyloCSF_smooth,364 PhyloCSF_smooth,690 PhyloCSFpower,22 PhyloCSFpower,259 PhyloCSFpower,379 PhyloCSFpower,649 PhyloCSFpower,656 Q0_tracks,258 Q0_tracks,366 Q0_tracks,383 Q0_tracks,711 Q0_tracks,779 Q0_tracks,1049 Q0_tracks,1110 Q1_tracks,260 Q1_tracks,368 Q1_tracks,385 Q1_tracks,713 Q1_tracks,781 Q1_tracks,1051 Q1_tracks,1112 Q2_tracks,260 Q2_tracks,368 Q2_tracks,385 Q2_tracks,713 Q2_tracks,781 Q2_tracks,1051 Q2_tracks,1112 Q3_tracks,260 Q3_tracks,368 Q3_tracks,385 Q3_tracks,713 Q3_tracks,781 Q3_tracks,1051 Q3_tracks,1112 Vero6_05hpi,36 Vero6_05hpi,66 Vero6_24hpi,36 Vero6_24hpi,66 augustusGene,41 bpmIggCovidSum,106 bpmIggCovidSum,194 bpmIggCovidSum,279 bpmIgmCovidSum,106 bpmIgmCovidSum,194 bpmIgmCovidSum,279 galaxyEna,260 galaxyEna,368 galaxyEna,385 galaxyEna,713 galaxyEna,781 galaxyEna,1051 galaxyEna,1112 galaxyEnaQ0Ba-1,256 galaxyEnaQ0Ba-1,364 galaxyEnaQ0Ba-1,381 galaxyEnaQ0Ba-1,709 galaxyEnaQ0Ba-1,777 galaxyEnaQ0Ba-1,1047 galaxyEnaQ0Ba-1,1108 galaxyEnaQ0Ba-1-1,256 galaxyEnaQ0Ba-1-1,364 galaxyEnaQ0Ba-1-1,381 galaxyEnaQ0Ba-1-1,709 galaxyEnaQ0Ba-1-1,777 galaxyEnaQ0Ba-1-1,1047 galaxyEnaQ0Ba-1-1,1108 galaxyEnaQ0Ba-1-1-11,256 galaxyEnaQ0Ba-1-1-11,364 galaxyEnaQ0Ba-1-1-11,381 galaxyEnaQ0Ba-1-1-11,709 galaxyEnaQ0Ba-1-1-11,777 galaxyEnaQ0Ba-1-1-11,1047 galaxyEnaQ0Ba-1-1-11,1108 galaxyEnaQ0Ba-1-17,256 galaxyEnaQ0Ba-1-17,364 galaxyEnaQ0Ba-1-17,381 galaxyEnaQ0Ba-1-17,709 galaxyEnaQ0Ba-1-17,777 galaxyEnaQ0Ba-1-17,1047 galaxyEnaQ0Ba-1-17,1108 galaxyEnaQ0Ba-2,256 galaxyEnaQ0Ba-2,364 galaxyEnaQ0Ba-2,381 galaxyEnaQ0Ba-2,709 galaxyEnaQ0Ba-2,777 galaxyEnaQ0Ba-2,1047 galaxyEnaQ0Ba-2,1108 galaxyEnaQ1Ay-4,256 galaxyEnaQ1Ay-4,364 galaxyEnaQ1Ay-4,381 galaxyEnaQ1Ay-4,709 galaxyEnaQ1Ay-4,777 galaxyEnaQ1Ay-4,1047 galaxyEnaQ1Ay-4,1108 galaxyEnaQ1Ay-4-2,256 galaxyEnaQ1Ay-4-2,364 galaxyEnaQ1Ay-4-2,381 galaxyEnaQ1Ay-4-2,709 galaxyEnaQ1Ay-4-2,777 galaxyEnaQ1Ay-4-2,1047 galaxyEnaQ1Ay-4-2,1108 galaxyEnaQ1Ay-4-2-2,256 galaxyEnaQ1Ay-4-2-2,364 galaxyEnaQ1Ay-4-2-2,381 galaxyEnaQ1Ay-4-2-2,709 galaxyEnaQ1Ay-4-2-2,777 galaxyEnaQ1Ay-4-2-2,1047 galaxyEnaQ1Ay-4-2-2,1108 galaxyEnaQ1Ay-43,256 galaxyEnaQ1Ay-43,364 galaxyEnaQ1Ay-43,381 galaxyEnaQ1Ay-43,709 galaxyEnaQ1Ay-43,777 galaxyEnaQ1Ay-43,1047 galaxyEnaQ1Ay-43,1108 galaxyEnaQ1Ba-1-17,256 galaxyEnaQ1Ba-1-17,364 galaxyEnaQ1Ba-1-17,381 galaxyEnaQ1Ba-1-17,709 galaxyEnaQ1Ba-1-17,777 galaxyEnaQ1Ba-1-17,1047 galaxyEnaQ1Ba-1-17,1108 galaxyEnaQ2Ay-120,256 galaxyEnaQ2Ay-120,364 galaxyEnaQ2Ay-120,381 galaxyEnaQ2Ay-120,709 galaxyEnaQ2Ay-120,777 galaxyEnaQ2Ay-120,1047 galaxyEnaQ2Ay-120,1108 galaxyEnaQ2Ay-122,256 galaxyEnaQ2Ay-122,364 galaxyEnaQ2Ay-122,381 galaxyEnaQ2Ay-122,709 galaxyEnaQ2Ay-122,777 galaxyEnaQ2Ay-122,1047 galaxyEnaQ2Ay-122,1108 galaxyEnaQ2Ay-4,256 galaxyEnaQ2Ay-4,364 galaxyEnaQ2Ay-4,381 galaxyEnaQ2Ay-4,709 galaxyEnaQ2Ay-4,777 galaxyEnaQ2Ay-4,1047 galaxyEnaQ2Ay-4,1108 galaxyEnaQ2Ay-5,256 galaxyEnaQ2Ay-5,364 galaxyEnaQ2Ay-5,381 galaxyEnaQ2Ay-5,709 galaxyEnaQ2Ay-5,777 galaxyEnaQ2Ay-5,1047 galaxyEnaQ2Ay-5,1108 galaxyEnaQ2Ay-6,256 galaxyEnaQ2Ay-6,364 galaxyEnaQ2Ay-6,381 galaxyEnaQ2Ay-6,709 galaxyEnaQ2Ay-6,777 galaxyEnaQ2Ay-6,1047 galaxyEnaQ2Ay-6,1108 galaxyEnaQ3Ay-4,256 galaxyEnaQ3Ay-4,364 galaxyEnaQ3Ay-4,381 galaxyEnaQ3Ay-4,709 galaxyEnaQ3Ay-4,777 galaxyEnaQ3Ay-4,1047 galaxyEnaQ3Ay-4,1108 galaxyEnaQ3Ay-5,256 galaxyEnaQ3Ay-5,364 galaxyEnaQ3Ay-5,381 galaxyEnaQ3Ay-5,709 galaxyEnaQ3Ay-5,777 galaxyEnaQ3Ay-5,1047 galaxyEnaQ3Ay-5,1108 galaxyEnaQ3Ay-9,256 galaxyEnaQ3Ay-9,364 galaxyEnaQ3Ay-9,381 galaxyEnaQ3Ay-9,709 galaxyEnaQ3Ay-9,777 galaxyEnaQ3Ay-9,1047 galaxyEnaQ3Ay-9,1108 galaxyEnaQ3B-1-1-7,256 galaxyEnaQ3B-1-1-7,364 galaxyEnaQ3B-1-1-7,381 galaxyEnaQ3B-1-1-7,709 galaxyEnaQ3B-1-1-7,777 galaxyEnaQ3B-1-1-7,1047 galaxyEnaQ3B-1-1-7,1108 galaxyEnaQ3B-1-617-2,256 galaxyEnaQ3B-1-617-2,364 galaxyEnaQ3B-1-617-2,381 galaxyEnaQ3B-1-617-2,709 galaxyEnaQ3B-1-617-2,777 galaxyEnaQ3B-1-617-2,1047 galaxyEnaQ3B-1-617-2,1108 genscan,56 genscan,74 kimIvtCov,102 kimNp,92 kimNp,115 kimRnaMod,240 kimTranscripts,91 multiz7way,296 nextstrainGene,70 pbm,106 pbm,194 pbm,279 pbmShanghai,69 pbmShanghai,115 pbmShanghai,126 pbmShanghai,163 pbmShanghai,285 pbmShanghai,396 phyloGenes,14 pyle,74 rapid,179 strainCons119way,171 strainCons44way,119 swift,116 targets,114 transcriptome,83 transcriptome,218 unipCov2Chain,48 unipCov2Chain,74 unipCov2Chain,96 unipCov2DisulfBond,44 unipCov2DisulfBond,70 unipCov2DisulfBond,92 unipCov2Domain,43 unipCov2Domain,69 unipCov2Domain,91 unipCov2LocCytopl,43 unipCov2LocCytopl,69 unipCov2LocCytopl,91 unipCov2LocExtra,43 unipCov2LocExtra,69 unipCov2LocExtra,91 unipCov2LocSignal,44 unipCov2LocSignal,70 unipCov2LocSignal,92 unipCov2LocTransMemb,44 unipCov2LocTransMemb,70 unipCov2LocTransMemb,92 unipCov2Modif,47 unipCov2Modif,73 unipCov2Modif,95 unipCov2Mut,44 unipCov2Mut,70 unipCov2Mut,92 unipCov2Other,44 unipCov2Other,70 unipCov2Other,92 unipCov2Repeat,42 unipCov2Repeat,68 unipCov2Repeat,90 unipCov2Struct,46 unipCov2Struct,72 unipCov2Struct,94 variantMuts,764 varskip,40 weizmanOrfs,42 weizmanOrfs,72 trade nextstrainSamples,747 sarsCov2PhyloPub,606 trained augustusGene,150 training augustusGene,162 augustusGene,176 augustusGene,180 augustusGene,199 augustusGene,228 augustusGene,243 augustusGene,259 augustusGene,273 trans Kim_RNAs,3 Kim_RNAs,5 Kim_TRS_sgmRNAs,4 Kim_TRS_sgmRNAs,6 Kim_non-TRS_sgmRNAs,7 transcript PhyloCSF_smooth,107 PhyloCSFpower,122 kimNp,4 kimNp,26 kimNp,57 kimRnaMod,110 unipCov2AliSwissprot,158 unipCov2AliSwissprot,234 unipCov2Chain,411 unipCov2DisulfBond,407 unipCov2Domain,406 unipCov2Interest,87 unipCov2LocCytopl,406 unipCov2LocExtra,406 unipCov2LocSignal,407 unipCov2LocTransMemb,407 unipCov2Modif,410 unipCov2Mut,407 unipCov2Other,407 unipCov2Repeat,405 unipCov2Struct,409 transcription TRS_sites,3 cpgIslandExt,32 cpgIslandExtUnmasked,35 cpgIslandSuper,32 kimIvtCov,35 kimTranscripts,65 transcriptome,57 transcriptional genscan,28 transcriptome PhyloCSF_smooth,112 PhyloCSFpower,127 cas13Crispr,69 cas13Crispr,320 cas13Crispr,331 cas13Crispr,344 kimIvtCov,189 kimNp,121 kimRnaMod,246 kimTranscripts,29 kimTranscripts,476 transcriptome,21 transcriptome,482 transcripts Calu3_07hpi,203 Kim_RNAs,8 Kim_TRS_sgmRNAs,8 Kim_non-TRS_sgmRNAs,4 Kim_non-TRS_sgmRNAs,8 ORFs,201 TRS_sites,10 Vero6_05hpi,203 Vero6_24hpi,203 augustusGene,124 kimIvtCov,116 kimIvtCov,117 kimRnaMod,85 kimRnaMod,93 kimRnaMod,102 kimTranscripts,4 kimTranscripts,135 kimTranscripts,155 kimTranscripts,198 kimTranscripts,240 kimTranscripts,282 kimTranscripts,294 kimTranscripts,307 kimTranscripts,317 mRNAs,2 mRNAs,8 strainCons119way,1758 strainCons44way,1353 transcriptome,5 transcriptome,164 transcriptome,167 transcriptome,277 weizmanOrfs,209 transformation contacts,216 transformed strainCons119way,2132 strainCons119way,2144 strainCons44way,1727 strainCons44way,1739 transition PhyloCSF_smooth,504 PhyloCSF_smooth,509 PhyloCSF_smooth,525 PhyloCSFpower,519 PhyloCSFpower,524 PhyloCSFpower,540 strainCons119way,983 strainCons44way,931 transitions multiz7way,634 translate multiz7way,493 strainCons119way,843 strainCons44way,791 translated Calu3_07hpi,193 ORFs,191 Vero6_05hpi,193 Vero6_24hpi,193 kimTranscripts,109 multiz7way,564 strainCons119way,914 strainCons44way,862 transcriptome,101 weizmanOrfs,199 translating Calu3_07hpi,186 ORFs,184 Vero6_05hpi,186 Vero6_24hpi,186 weizmanOrfs,192 translation Calu3_07hpi,137 Calu3_07hpi,159 Calu3_07hpi,175 ORFs,135 ORFs,157 ORFs,173 Vero6_05hpi,137 Vero6_05hpi,159 Vero6_05hpi,175 Vero6_24hpi,137 Vero6_24hpi,159 Vero6_24hpi,175 augustusGene,57 multiz7way,411 multiz7way,428 multiz7way,436 multiz7way,454 multiz7way,466 multiz7way,473 multiz7way,511 multiz7way,513 multiz7way,540 strainCons119way,753 strainCons119way,778 strainCons119way,786 strainCons119way,804 strainCons119way,816 strainCons119way,823 strainCons119way,861 strainCons119way,863 strainCons119way,890 strainCons44way,701 strainCons44way,726 strainCons44way,734 strainCons44way,752 strainCons44way,764 strainCons44way,771 strainCons44way,809 strainCons44way,811 strainCons44way,838 weizmanOrfs,143 weizmanOrfs,165 weizmanOrfs,181 translational genscan,29 transmem unipCov2LocTransMemb,1 transmembrane unipCov2Chain,150 unipCov2Chain,158 unipCov2Chain,326 unipCov2Chain,376 unipCov2DisulfBond,146 unipCov2DisulfBond,154 unipCov2DisulfBond,322 unipCov2DisulfBond,372 unipCov2Domain,145 unipCov2Domain,153 unipCov2Domain,321 unipCov2Domain,371 unipCov2LocCytopl,145 unipCov2LocCytopl,153 unipCov2LocCytopl,321 unipCov2LocCytopl,371 unipCov2LocExtra,145 unipCov2LocExtra,153 unipCov2LocExtra,321 unipCov2LocExtra,371 unipCov2LocSignal,146 unipCov2LocSignal,154 unipCov2LocSignal,322 unipCov2LocSignal,372 unipCov2LocTransMemb,4 unipCov2LocTransMemb,146 unipCov2LocTransMemb,154 unipCov2LocTransMemb,322 unipCov2LocTransMemb,372 unipCov2Modif,149 unipCov2Modif,157 unipCov2Modif,325 unipCov2Modif,375 unipCov2Mut,146 unipCov2Mut,154 unipCov2Mut,322 unipCov2Mut,372 unipCov2Other,146 unipCov2Other,154 unipCov2Other,322 unipCov2Other,372 unipCov2Repeat,144 unipCov2Repeat,152 unipCov2Repeat,320 unipCov2Repeat,370 unipCov2Struct,148 unipCov2Struct,156 unipCov2Struct,324 unipCov2Struct,374 transmissibility variantMuts,104 variantMuts,128 transmissible spikeMuts,89 transmission multiz7way,960 strainCons119way,2338 strainCons44way,1933 treangen,83 treangen,324 variantMuts,140 variantMuts,1347 transparent Q0_tracks,39 Q1_tracks,41 Q2_tracks,41 Q3_tracks,41 galaxyEna,41 galaxyEnaQ0Ba-1,37 galaxyEnaQ0Ba-1-1,37 galaxyEnaQ0Ba-1-1-11,37 galaxyEnaQ0Ba-1-17,37 galaxyEnaQ0Ba-2,37 galaxyEnaQ1Ay-4,37 galaxyEnaQ1Ay-4-2,37 galaxyEnaQ1Ay-4-2-2,37 galaxyEnaQ1Ay-43,37 galaxyEnaQ1Ba-1-17,37 galaxyEnaQ2Ay-120,37 galaxyEnaQ2Ay-122,37 galaxyEnaQ2Ay-4,37 galaxyEnaQ2Ay-5,37 galaxyEnaQ2Ay-6,37 galaxyEnaQ3Ay-4,37 galaxyEnaQ3Ay-5,37 galaxyEnaQ3Ay-9,37 galaxyEnaQ3B-1-1-7,37 galaxyEnaQ3B-1-617-2,37 treangen treangen,9 treat abEscape,851 bloomEscMabAvg,855 bloomEscMax,861 bloomEscSerumAvg,856 bloomEscTop,859 escape,858 mccoy,851 rappuoli,858 strainCons119way,391 strainCons44way,339 treated Calu3_07hpi,172 ORFs,170 Vero6_05hpi,172 Vero6_24hpi,172 weizmanOrfs,178 treating Calu3_07hpi,141 ORFs,139 Vero6_05hpi,141 Vero6_24hpi,141 weizmanOrfs,147 treatment abEscape,136 abEscape,143 abEscape,266 abEscape,599 bloomEscMabAvg,140 bloomEscMabAvg,147 bloomEscMabAvg,270 bloomEscMabAvg,603 bloomEscMax,146 bloomEscMax,153 bloomEscMax,276 bloomEscMax,609 bloomEscSerumAvg,141 bloomEscSerumAvg,148 bloomEscSerumAvg,271 bloomEscSerumAvg,604 bloomEscTop,144 bloomEscTop,151 bloomEscTop,274 bloomEscTop,607 escape,143 escape,150 escape,273 escape,606 mccoy,136 mccoy,143 mccoy,266 mccoy,599 rappuoli,143 rappuoli,150 rappuoli,273 rappuoli,606 sarsCov2Phylo,759 treatments spikeMuts,50 tree PhyloCSF_smooth,419 PhyloCSF_smooth,423 PhyloCSFpower,434 PhyloCSFpower,438 multiz7way,742 multiz7way,771 multiz7way,903 nextstrainClade,40 nextstrainFreq,40 nextstrainFreq,78 nextstrainFreq,130 nextstrainGene,36 nextstrainParsimony,10 nextstrainParsimony,57 nextstrainParsimony,95 nextstrainParsimony,116 nextstrainParsimony,130 nextstrainParsimony,151 nextstrainParsimony,202 nextstrainParsimony,275 nextstrainParsimony,333 nextstrainSamples,51 nextstrainSamples,177 nextstrainSamples,209 nextstrainSamples,342 nextstrainSamples,459 nextstrainSamples,515 nextstrainSamples,524 nextstrainSamples,536 nextstrainSamples,587 nextstrainSamples,645 pond,103 pond,150 recomb,27 recomb,186 sarsCov2Phylo,4 sarsCov2Phylo,25 sarsCov2Phylo,73 sarsCov2Phylo,100 sarsCov2Phylo,128 sarsCov2Phylo,161 sarsCov2Phylo,208 sarsCov2Phylo,216 sarsCov2Phylo,236 sarsCov2Phylo,243 sarsCov2Phylo,346 sarsCov2Phylo,489 sarsCov2Phylo,557 sarsCov2Phylo,653 sarsCov2Phylo,667 sarsCov2Phylo,930 sarsCov2PhyloPub,4 sarsCov2PhyloPub,23 sarsCov2PhyloPub,87 sarsCov2PhyloPub,113 sarsCov2PhyloPub,137 sarsCov2PhyloPub,167 sarsCov2PhyloPub,215 sarsCov2PhyloPub,223 sarsCov2PhyloPub,243 sarsCov2PhyloPub,250 sarsCov2PhyloPub,357 sarsCov2PhyloPub,518 sarsCov2PhyloPub,582 sarsCov2PhyloPub,677 sarsCov2PhyloPub,691 sarsCov2PhyloPub,715 sarsCov2PhyloPub,751 sarsCov2PhyloPub,780 sarsCov2PhyloPub,862 sarsCov2PhyloPub,899 strainCons119way,1502 strainCons119way,1531 strainCons119way,1669 strainCons119way,1682 strainCons119way,1686 strainCons119way,1709 strainCons119way,1761 strainCons119way,1780 strainCons119way,2281 strainCons44way,1172 strainCons44way,1201 strainCons44way,1264 strainCons44way,1277 strainCons44way,1281 strainCons44way,1304 strainCons44way,1356 strainCons44way,1375 strainCons44way,1876 variantMuts,192 tree_doctor multiz7way,850 strainCons119way,2228 strainCons44way,1823 trees multiz7way,812 nextstrainParsimony,382 nextstrainSamples,560 nextstrainSamples,707 sarsCov2Phylo,1130 sarsCov2Phylo,1163 sarsCov2PhyloPub,1241 sarsCov2PhyloPub,1263 sarsCov2PhyloPub,1296 strainCons119way,32 strainCons44way,29 treeshrink sarsCov2Phylo,662 sarsCov2Phylo,1150 sarsCov2PhyloPub,686 sarsCov2PhyloPub,1283 treetime nextstrainClade,54 nextstrainFreq,418 nextstrainSamples,1038 trembl unipCov2Chain,85 unipCov2Chain,89 unipCov2Chain,311 unipCov2DisulfBond,81 unipCov2DisulfBond,85 unipCov2DisulfBond,307 unipCov2Domain,80 unipCov2Domain,84 unipCov2Domain,306 unipCov2LocCytopl,80 unipCov2LocCytopl,84 unipCov2LocCytopl,306 unipCov2LocExtra,80 unipCov2LocExtra,84 unipCov2LocExtra,306 unipCov2LocSignal,81 unipCov2LocSignal,85 unipCov2LocSignal,307 unipCov2LocTransMemb,81 unipCov2LocTransMemb,85 unipCov2LocTransMemb,307 unipCov2Modif,84 unipCov2Modif,88 unipCov2Modif,310 unipCov2Mut,81 unipCov2Mut,85 unipCov2Mut,307 unipCov2Other,81 unipCov2Other,85 unipCov2Other,307 unipCov2Repeat,79 unipCov2Repeat,83 unipCov2Repeat,305 unipCov2Struct,83 unipCov2Struct,87 unipCov2Struct,309 trf simpleRepeat,7 simpleRepeat,26 simpleRepeat,61 simpleRepeat,67 trigger rosettaMhc,45 trim Q0_tracks,132 Q1_tracks,134 Q2_tracks,134 Q3_tracks,134 galaxyEna,134 galaxyEnaQ0Ba-1,130 galaxyEnaQ0Ba-1-1,130 galaxyEnaQ0Ba-1-1-11,130 galaxyEnaQ0Ba-1-17,130 galaxyEnaQ0Ba-2,130 galaxyEnaQ1Ay-4,130 galaxyEnaQ1Ay-4-2,130 galaxyEnaQ1Ay-4-2-2,130 galaxyEnaQ1Ay-43,130 galaxyEnaQ1Ba-1-17,130 galaxyEnaQ2Ay-120,130 galaxyEnaQ2Ay-122,130 galaxyEnaQ2Ay-4,130 galaxyEnaQ2Ay-5,130 galaxyEnaQ2Ay-6,130 galaxyEnaQ3Ay-4,130 galaxyEnaQ3Ay-5,130 galaxyEnaQ3Ay-9,130 galaxyEnaQ3B-1-1-7,130 galaxyEnaQ3B-1-617-2,130 trimming Q0_tracks,864 Q1_tracks,866 Q2_tracks,866 Q3_tracks,866 galaxyEna,866 galaxyEnaQ0Ba-1,862 galaxyEnaQ0Ba-1-1,862 galaxyEnaQ0Ba-1-1-11,862 galaxyEnaQ0Ba-1-17,862 galaxyEnaQ0Ba-2,862 galaxyEnaQ1Ay-4,862 galaxyEnaQ1Ay-4-2,862 galaxyEnaQ1Ay-4-2-2,862 galaxyEnaQ1Ay-43,862 galaxyEnaQ1Ba-1-17,862 galaxyEnaQ2Ay-120,862 galaxyEnaQ2Ay-122,862 galaxyEnaQ2Ay-4,862 galaxyEnaQ2Ay-5,862 galaxyEnaQ2Ay-6,862 galaxyEnaQ3Ay-4,862 galaxyEnaQ3Ay-5,862 galaxyEnaQ3Ay-9,862 galaxyEnaQ3B-1-1-7,862 galaxyEnaQ3B-1-617-2,862 triplet Q0_tracks,500 Q1_tracks,502 Q2_tracks,502 Q3_tracks,502 galaxyEna,502 galaxyEnaQ0Ba-1,498 galaxyEnaQ0Ba-1-1,498 galaxyEnaQ0Ba-1-1-11,498 galaxyEnaQ0Ba-1-17,498 galaxyEnaQ0Ba-2,498 galaxyEnaQ1Ay-4,498 galaxyEnaQ1Ay-4-2,498 galaxyEnaQ1Ay-4-2-2,498 galaxyEnaQ1Ay-43,498 galaxyEnaQ1Ba-1-17,498 galaxyEnaQ2Ay-120,498 galaxyEnaQ2Ay-122,498 galaxyEnaQ2Ay-4,498 galaxyEnaQ2Ay-5,498 galaxyEnaQ2Ay-6,498 galaxyEnaQ3Ay-4,498 galaxyEnaQ3Ay-5,498 galaxyEnaQ3Ay-9,498 galaxyEnaQ3B-1-1-7,498 galaxyEnaQ3B-1-617-2,498 triplicate pbmShanghai,102 triplicates pbmShanghai,200 trs Kim_TRS_sgmRNAs,3 Kim_TRS_sgmRNAs,16 Kim_non-TRS_sgmRNAs,16 TRS_sites,1 TRS_sites,6 kimTranscripts,154 kimTranscripts,281 transcriptome,125 transcriptome,129 transcriptome,141 transcriptome,146 transcriptome,198 transcriptome,242 transcriptome,246 transcriptome,256 transcriptome,280 trs-b kimTranscripts,63 transcriptome,55 transcriptome,175 transcriptome,305 trs-l kimTranscripts,71 kimTranscripts,298 transcriptome,63 transcriptome,294 trs.bb transcriptome,429 true PhyloCSF_smooth,321 PhyloCSFpower,336 augustusGene,132 windowmaskerSdust,60 windowmaskerSdust,69 ts cas13Crispr,82 cpgIslandExt,106 cpgIslandExtUnmasked,109 cpgIslandSuper,106 tstart vaccines,282 tsueng variantMuts,1482 tsv nextstrainSamples,991 resistPred,266 tuanlin icshape,193 tung igg,14 igm,14 pbmShanghai,23 turakhia problematicSites,413 problematicSites,565 problematicSites,587 recomb,322 sarsCov2Phylo,626 sarsCov2Phylo,698 sarsCov2Phylo,1076 sarsCov2Phylo,1098 sarsCov2PhyloPub,805 sarsCov2PhyloPub,1196 sarsCov2PhyloPub,1218 turn Q0_tracks,360 Q1_tracks,362 Q2_tracks,362 Q3_tracks,362 cpgIslandExt,104 cpgIslandExtUnmasked,107 cpgIslandSuper,104 galaxyEna,362 galaxyEnaQ0Ba-1,358 galaxyEnaQ0Ba-1-1,358 galaxyEnaQ0Ba-1-1-11,358 galaxyEnaQ0Ba-1-17,358 galaxyEnaQ0Ba-2,358 galaxyEnaQ1Ay-4,358 galaxyEnaQ1Ay-4-2,358 galaxyEnaQ1Ay-4-2-2,358 galaxyEnaQ1Ay-43,358 galaxyEnaQ1Ba-1-17,358 galaxyEnaQ2Ay-120,358 galaxyEnaQ2Ay-122,358 galaxyEnaQ2Ay-4,358 galaxyEnaQ2Ay-5,358 galaxyEnaQ2Ay-6,358 galaxyEnaQ3Ay-4,358 galaxyEnaQ3Ay-5,358 galaxyEnaQ3Ay-9,358 galaxyEnaQ3B-1-1-7,358 galaxyEnaQ3B-1-617-2,358 turned multiz7way,414 turns unipCov2Chain,229 unipCov2DisulfBond,225 unipCov2Domain,224 unipCov2LocCytopl,224 unipCov2LocExtra,224 unipCov2LocSignal,225 unipCov2LocTransMemb,225 unipCov2Modif,228 unipCov2Mut,225 unipCov2Other,225 unipCov2Repeat,223 unipCov2Struct,227 tweak vaccines,468 vaccines,598 tweedie PhyloCSF_smooth,750 PhyloCSFpower,716 twenty rapid,89 twice cpgIslandExt,354 cpgIslandExtUnmasked,357 cpgIslandSuper,354 two Calu3_07hpi,128 Calu3_07hpi,131 Calu3_07hpi,149 Calu3_07hpi,211 Calu3_07hpi,241 Calu3_07hpi,249 IgG_Z-score-_COVID-19_patients,181 IgM_Z-score-_COVID-19_patients,181 ORFs,126 ORFs,129 ORFs,147 ORFs,209 ORFs,239 ORFs,247 Q2_tracks,7 Q2_tracks,14 Vero6_05hpi,128 Vero6_05hpi,131 Vero6_05hpi,149 Vero6_05hpi,211 Vero6_05hpi,241 Vero6_05hpi,249 Vero6_24hpi,128 Vero6_24hpi,131 Vero6_24hpi,149 Vero6_24hpi,211 Vero6_24hpi,241 Vero6_24hpi,249 abEscape,451 bloomEscMabAvg,455 bloomEscMax,461 bloomEscSerumAvg,456 bloomEscTop,459 bpmIggCovidSum,190 bpmIgmCovidSum,190 crisprDet,66 epitopes,286 escape,458 mccoy,451 nextstrainSamples,249 pbm,190 pbmShanghai,113 pbmShanghai,123 pbmShanghai,283 pbmShanghai,335 pbmShanghai,339 pond,94 potPathoIndel,32 primers,187 problematicSites,121 problematicSites,347 pyle,73 rapid,53 rapid,105 rappuoli,458 recomb,146 recomb,211 sarsCov2Phylo,123 strainCons119way,118 strainCons119way,245 strainCons44way,66 strainCons44way,193 targets,38 targets,113 vaccines,445 variantMuts,1056 weizmanOrfs,134 weizmanOrfs,137 weizmanOrfs,155 weizmanOrfs,217 weizmanOrfs,247 weizmanOrfs,255 two-state strainCons119way,1840 strainCons44way,1435 twobittofa cpgIslandExt,411 cpgIslandExt,497 cpgIslandExt,502 cpgIslandExtUnmasked,414 cpgIslandExtUnmasked,500 cpgIslandExtUnmasked,505 cpgIslandSuper,411 cpgIslandSuper,497 cpgIslandSuper,502 ty strainCons119way,1215 strainCons119way,1220 strainCons119way,1225 type Starr_Bloom,38 Starr_Bloom_bind,35 gold,145 pond,212 problematicSites,177 strainCons119way,1797 strainCons44way,1392 unipCov2AliSwissprot,90 unipCov2Chain,54 unipCov2Chain,156 unipCov2Chain,275 unipCov2DisulfBond,50 unipCov2DisulfBond,152 unipCov2DisulfBond,271 unipCov2Domain,49 unipCov2Domain,151 unipCov2Domain,270 unipCov2LocCytopl,49 unipCov2LocCytopl,151 unipCov2LocCytopl,270 unipCov2LocExtra,49 unipCov2LocExtra,151 unipCov2LocExtra,270 unipCov2LocSignal,50 unipCov2LocSignal,152 unipCov2LocSignal,271 unipCov2LocTransMemb,50 unipCov2LocTransMemb,152 unipCov2LocTransMemb,271 unipCov2Modif,53 unipCov2Modif,155 unipCov2Modif,274 unipCov2Mut,50 unipCov2Mut,152 unipCov2Mut,271 unipCov2Other,50 unipCov2Other,152 unipCov2Other,271 unipCov2Repeat,48 unipCov2Repeat,150 unipCov2Repeat,269 unipCov2Struct,52 unipCov2Struct,154 unipCov2Struct,273 vaccines,340 typed cd8escape,165 spikeMuts,233 types Q0_tracks,950 Q1_tracks,952 Q2_tracks,952 Q3_tracks,952 augustusGene,89 galaxyEna,952 galaxyEnaQ0Ba-1,948 galaxyEnaQ0Ba-1-1,948 galaxyEnaQ0Ba-1-1-11,948 galaxyEnaQ0Ba-1-17,948 galaxyEnaQ0Ba-2,948 galaxyEnaQ1Ay-4,948 galaxyEnaQ1Ay-4-2,948 galaxyEnaQ1Ay-4-2-2,948 galaxyEnaQ1Ay-43,948 galaxyEnaQ1Ba-1-17,948 galaxyEnaQ2Ay-120,948 galaxyEnaQ2Ay-122,948 galaxyEnaQ2Ay-4,948 galaxyEnaQ2Ay-5,948 galaxyEnaQ2Ay-6,948 galaxyEnaQ3Ay-4,948 galaxyEnaQ3Ay-5,948 galaxyEnaQ3Ay-9,948 galaxyEnaQ3B-1-1-7,948 galaxyEnaQ3B-1-617-2,948 gold,136 problematicSites,137 problematicSites,153 problematicSites,161 typical cpgIslandExt,161 cpgIslandExtUnmasked,164 cpgIslandSuper,161 typically cpgIslandExt,29 cpgIslandExtUnmasked,32 cpgIslandSuper,29 gc5BaseBw,33 u multiz7way,1153 sarsCov2Phylo,1147 sarsCov2PhyloPub,1280 strainCons119way,2531 strainCons44way,2126 u.c epitopes,314 uc strainCons44way,2267 ucr resistPred,82 ucsc Q0_tracks,255 Q1_tracks,257 Q2_tracks,257 Q3_tracks,257 addgene,178 contacts,36 contacts,402 galaxyEna,257 galaxyEnaQ0Ba-1,253 galaxyEnaQ0Ba-1-1,253 galaxyEnaQ0Ba-1-1-11,253 galaxyEnaQ0Ba-1-17,253 galaxyEnaQ0Ba-2,253 galaxyEnaQ1Ay-4,253 galaxyEnaQ1Ay-4-2,253 galaxyEnaQ1Ay-4-2-2,253 galaxyEnaQ1Ay-43,253 galaxyEnaQ1Ba-1-17,253 galaxyEnaQ2Ay-120,253 galaxyEnaQ2Ay-122,253 galaxyEnaQ2Ay-4,253 galaxyEnaQ2Ay-5,253 galaxyEnaQ2Ay-6,253 galaxyEnaQ3Ay-4,253 galaxyEnaQ3Ay-5,253 galaxyEnaQ3Ay-9,253 galaxyEnaQ3B-1-1-7,253 galaxyEnaQ3B-1-617-2,253 kimTranscripts,454 multiz7way,51 multiz7way,873 multiz7way,883 multiz7way,891 multiz7way,902 multiz7way,910 multiz7way,929 ncbiGeneBGP,175 ncbiProducts,191 nextstrainClade,170 nextstrainFreq,162 nextstrainGene,120 nextstrainParsimony,319 nextstrainParsimony,326 nextstrainSamples,652 primers,382 problematicSites,455 rnaStructRangan,85 rosettaMhc,377 rosettaMhc,390 sarsCov2PhyloPub,708 sarsCov2PhyloPub,733 sarsCov2PhyloPub,743 sarsCov2PhyloPub,853 strainCons119way,144 strainCons119way,2251 strainCons119way,2261 strainCons119way,2269 strainCons119way,2280 strainCons119way,2288 strainCons119way,2307 strainCons44way,92 strainCons44way,1846 strainCons44way,1856 strainCons44way,1864 strainCons44way,1875 strainCons44way,1883 strainCons44way,1902 strainCons44way,2255 transcriptome,460 ucscToINSDC,17 ucscToRefSeq,12 unipCov2AliSwissprot,3 unipCov2AliSwissprot,156 unipCov2AliSwissprot,409 unipCov2Chain,61 unipCov2Chain,83 unipCov2Chain,409 unipCov2Chain,639 unipCov2Chain,658 unipCov2DisulfBond,57 unipCov2DisulfBond,79 unipCov2DisulfBond,405 unipCov2DisulfBond,635 unipCov2DisulfBond,654 unipCov2Domain,56 unipCov2Domain,78 unipCov2Domain,404 unipCov2Domain,634 unipCov2Domain,653 unipCov2Interest,85 unipCov2Interest,292 unipCov2LocCytopl,56 unipCov2LocCytopl,78 unipCov2LocCytopl,404 unipCov2LocCytopl,634 unipCov2LocCytopl,653 unipCov2LocExtra,56 unipCov2LocExtra,78 unipCov2LocExtra,404 unipCov2LocExtra,634 unipCov2LocExtra,653 unipCov2LocSignal,57 unipCov2LocSignal,79 unipCov2LocSignal,405 unipCov2LocSignal,635 unipCov2LocSignal,654 unipCov2LocTransMemb,57 unipCov2LocTransMemb,79 unipCov2LocTransMemb,405 unipCov2LocTransMemb,635 unipCov2LocTransMemb,654 unipCov2Modif,60 unipCov2Modif,82 unipCov2Modif,408 unipCov2Modif,638 unipCov2Modif,657 unipCov2Mut,57 unipCov2Mut,79 unipCov2Mut,405 unipCov2Mut,635 unipCov2Mut,654 unipCov2Other,57 unipCov2Other,79 unipCov2Other,405 unipCov2Other,635 unipCov2Other,654 unipCov2Repeat,55 unipCov2Repeat,77 unipCov2Repeat,403 unipCov2Repeat,633 unipCov2Repeat,652 unipCov2Struct,59 unipCov2Struct,81 unipCov2Struct,407 unipCov2Struct,637 unipCov2Struct,656 vaccines,232 variantMuts,856 variantMuts,862 variantMuts,986 variantMuts,1231 ucsc.edu rosettaMhc,366 rosettaMhc,370 udcdir icshape,148 nextstrainFreq,237 uk Q0_tracks,726 Q0_tracks,1216 Q1_tracks,728 Q1_tracks,1218 Q2_tracks,728 Q2_tracks,1218 Q3_tracks,728 Q3_tracks,1218 galaxyEna,728 galaxyEna,1218 galaxyEnaQ0Ba-1,724 galaxyEnaQ0Ba-1,1214 galaxyEnaQ0Ba-1-1,724 galaxyEnaQ0Ba-1-1,1214 galaxyEnaQ0Ba-1-1-11,724 galaxyEnaQ0Ba-1-1-11,1214 galaxyEnaQ0Ba-1-17,724 galaxyEnaQ0Ba-1-17,1214 galaxyEnaQ0Ba-2,724 galaxyEnaQ0Ba-2,1214 galaxyEnaQ1Ay-4,724 galaxyEnaQ1Ay-4,1214 galaxyEnaQ1Ay-4-2,724 galaxyEnaQ1Ay-4-2,1214 galaxyEnaQ1Ay-4-2-2,724 galaxyEnaQ1Ay-4-2-2,1214 galaxyEnaQ1Ay-43,724 galaxyEnaQ1Ay-43,1214 galaxyEnaQ1Ba-1-17,724 galaxyEnaQ1Ba-1-17,1214 galaxyEnaQ2Ay-120,724 galaxyEnaQ2Ay-120,1214 galaxyEnaQ2Ay-122,724 galaxyEnaQ2Ay-122,1214 galaxyEnaQ2Ay-4,724 galaxyEnaQ2Ay-4,1214 galaxyEnaQ2Ay-5,724 galaxyEnaQ2Ay-5,1214 galaxyEnaQ2Ay-6,724 galaxyEnaQ2Ay-6,1214 galaxyEnaQ3Ay-4,724 galaxyEnaQ3Ay-4,1214 galaxyEnaQ3Ay-5,724 galaxyEnaQ3Ay-5,1214 galaxyEnaQ3Ay-9,724 galaxyEnaQ3Ay-9,1214 galaxyEnaQ3B-1-1-7,724 galaxyEnaQ3B-1-1-7,1214 galaxyEnaQ3B-1-617-2,724 galaxyEnaQ3B-1-617-2,1214 variantAaMutsV2_B_1_1_7,7 variantMuts,1311 variantNucMutsV2_B_1_1_7,7 ultrafast sarsCov2PhyloPub,1236 un-modified kimRnaMod,92 unaligned strainCons119way,395 strainCons44way,343 variantMuts,915 unannotated Calu3_07hpi,22 ORFs,20 Vero6_05hpi,22 Vero6_24hpi,22 weizmanOrfs,28 unclear variantMuts,157 uncommon recomb,157 under PhyloCSF_smooth,487 PhyloCSFpower,502 abEscape,431 bloomEscMabAvg,435 bloomEscMax,441 bloomEscSerumAvg,436 bloomEscTop,439 escape,438 mccoy,431 pond,139 problematicSites,23 rappuoli,438 strainCons119way,313 strainCons119way,364 strainCons119way,2112 strainCons119way,2120 strainCons44way,261 strainCons44way,312 strainCons44way,1707 strainCons44way,1715 variantMuts,13 variantMuts,151 variantMuts,1075 undergoing addgene,39 undergraduate rnaStructRangan,86 underlies genscan,142 underlying Q0_tracks,774 Q1_tracks,776 Q2_tracks,776 Q3_tracks,776 galaxyEna,776 galaxyEnaQ0Ba-1,772 galaxyEnaQ0Ba-1-1,772 galaxyEnaQ0Ba-1-1-11,772 galaxyEnaQ0Ba-1-17,772 galaxyEnaQ0Ba-2,772 galaxyEnaQ1Ay-4,772 galaxyEnaQ1Ay-4-2,772 galaxyEnaQ1Ay-4-2-2,772 galaxyEnaQ1Ay-43,772 galaxyEnaQ1Ba-1-17,772 galaxyEnaQ2Ay-120,772 galaxyEnaQ2Ay-122,772 galaxyEnaQ2Ay-4,772 galaxyEnaQ2Ay-5,772 galaxyEnaQ2Ay-6,772 galaxyEnaQ3Ay-4,772 galaxyEnaQ3Ay-5,772 galaxyEnaQ3Ay-9,772 galaxyEnaQ3B-1-1-7,772 galaxyEnaQ3B-1-617-2,772 icshape,88 nextstrainClade,185 nextstrainFreq,177 nextstrainGene,135 nextstrainParsimony,347 nextstrainSamples,648 primers,322 problematicSites,504 recomb,279 sarsCov2Phylo,709 understand epitopes,191 rosettaMhc,148 understanding epitopes,154 transcriptome,225 unified sarsCov2Phylo,155 sarsCov2PhyloPub,161 unipaliswissprotcov2.bb unipCov2AliSwissprot,369 unipinterestcov2.bb unipCov2Interest,275 uniprot gordon2,199 gordon2,213 unipCov2AliSwissprot,11 unipCov2AliSwissprot,23 unipCov2AliSwissprot,50 unipCov2AliSwissprot,69 unipCov2AliSwissprot,79 unipCov2AliSwissprot,120 unipCov2AliSwissprot,133 unipCov2AliSwissprot,147 unipCov2AliSwissprot,151 unipCov2AliSwissprot,182 unipCov2AliSwissprot,188 unipCov2AliSwissprot,368 unipCov2AliSwissprot,423 unipCov2AliSwissprot,432 unipCov2AliSwissprot,441 unipCov2AliSwissprot,452 unipCov2Chain,3 unipCov2Chain,10 unipCov2Chain,22 unipCov2Chain,39 unipCov2Chain,57 unipCov2Chain,122 unipCov2Chain,138 unipCov2Chain,149 unipCov2Chain,160 unipCov2Chain,171 unipCov2Chain,181 unipCov2Chain,191 unipCov2Chain,196 unipCov2Chain,208 unipCov2Chain,217 unipCov2Chain,230 unipCov2Chain,239 unipCov2Chain,241 unipCov2Chain,251 unipCov2Chain,264 unipCov2Chain,305 unipCov2Chain,339 unipCov2Chain,353 unipCov2Chain,382 unipCov2Chain,404 unipCov2Chain,435 unipCov2Chain,441 unipCov2Chain,598 unipCov2Chain,653 unipCov2Chain,661 unipCov2Chain,670 unipCov2Chain,681 unipCov2DisulfBond,3 unipCov2DisulfBond,6 unipCov2DisulfBond,18 unipCov2DisulfBond,35 unipCov2DisulfBond,53 unipCov2DisulfBond,118 unipCov2DisulfBond,134 unipCov2DisulfBond,145 unipCov2DisulfBond,156 unipCov2DisulfBond,167 unipCov2DisulfBond,177 unipCov2DisulfBond,187 unipCov2DisulfBond,192 unipCov2DisulfBond,204 unipCov2DisulfBond,213 unipCov2DisulfBond,226 unipCov2DisulfBond,235 unipCov2DisulfBond,237 unipCov2DisulfBond,247 unipCov2DisulfBond,260 unipCov2DisulfBond,301 unipCov2DisulfBond,335 unipCov2DisulfBond,349 unipCov2DisulfBond,378 unipCov2DisulfBond,400 unipCov2DisulfBond,431 unipCov2DisulfBond,437 unipCov2DisulfBond,594 unipCov2DisulfBond,649 unipCov2DisulfBond,657 unipCov2DisulfBond,666 unipCov2DisulfBond,677 unipCov2Domain,3 unipCov2Domain,5 unipCov2Domain,17 unipCov2Domain,34 unipCov2Domain,52 unipCov2Domain,117 unipCov2Domain,133 unipCov2Domain,144 unipCov2Domain,155 unipCov2Domain,166 unipCov2Domain,176 unipCov2Domain,186 unipCov2Domain,191 unipCov2Domain,203 unipCov2Domain,212 unipCov2Domain,225 unipCov2Domain,234 unipCov2Domain,236 unipCov2Domain,246 unipCov2Domain,259 unipCov2Domain,300 unipCov2Domain,334 unipCov2Domain,348 unipCov2Domain,377 unipCov2Domain,399 unipCov2Domain,430 unipCov2Domain,436 unipCov2Domain,593 unipCov2Domain,648 unipCov2Domain,656 unipCov2Domain,665 unipCov2Domain,676 unipCov2Interest,2 unipCov2Interest,7 unipCov2Interest,24 unipCov2Interest,41 unipCov2Interest,51 unipCov2Interest,76 unipCov2Interest,80 unipCov2Interest,111 unipCov2Interest,117 unipCov2Interest,274 unipCov2Interest,306 unipCov2Interest,315 unipCov2Interest,324 unipCov2Interest,335 unipCov2LocCytopl,2 unipCov2LocCytopl,5 unipCov2LocCytopl,17 unipCov2LocCytopl,34 unipCov2LocCytopl,52 unipCov2LocCytopl,117 unipCov2LocCytopl,133 unipCov2LocCytopl,144 unipCov2LocCytopl,155 unipCov2LocCytopl,166 unipCov2LocCytopl,176 unipCov2LocCytopl,186 unipCov2LocCytopl,191 unipCov2LocCytopl,203 unipCov2LocCytopl,212 unipCov2LocCytopl,225 unipCov2LocCytopl,234 unipCov2LocCytopl,236 unipCov2LocCytopl,246 unipCov2LocCytopl,259 unipCov2LocCytopl,300 unipCov2LocCytopl,334 unipCov2LocCytopl,348 unipCov2LocCytopl,377 unipCov2LocCytopl,399 unipCov2LocCytopl,430 unipCov2LocCytopl,436 unipCov2LocCytopl,593 unipCov2LocCytopl,648 unipCov2LocCytopl,656 unipCov2LocCytopl,665 unipCov2LocCytopl,676 unipCov2LocExtra,2 unipCov2LocExtra,5 unipCov2LocExtra,17 unipCov2LocExtra,34 unipCov2LocExtra,52 unipCov2LocExtra,117 unipCov2LocExtra,133 unipCov2LocExtra,144 unipCov2LocExtra,155 unipCov2LocExtra,166 unipCov2LocExtra,176 unipCov2LocExtra,186 unipCov2LocExtra,191 unipCov2LocExtra,203 unipCov2LocExtra,212 unipCov2LocExtra,225 unipCov2LocExtra,234 unipCov2LocExtra,236 unipCov2LocExtra,246 unipCov2LocExtra,259 unipCov2LocExtra,300 unipCov2LocExtra,334 unipCov2LocExtra,348 unipCov2LocExtra,377 unipCov2LocExtra,399 unipCov2LocExtra,430 unipCov2LocExtra,436 unipCov2LocExtra,593 unipCov2LocExtra,648 unipCov2LocExtra,656 unipCov2LocExtra,665 unipCov2LocExtra,676 unipCov2LocSignal,3 unipCov2LocSignal,6 unipCov2LocSignal,18 unipCov2LocSignal,35 unipCov2LocSignal,53 unipCov2LocSignal,118 unipCov2LocSignal,134 unipCov2LocSignal,145 unipCov2LocSignal,156 unipCov2LocSignal,167 unipCov2LocSignal,177 unipCov2LocSignal,187 unipCov2LocSignal,192 unipCov2LocSignal,204 unipCov2LocSignal,213 unipCov2LocSignal,226 unipCov2LocSignal,235 unipCov2LocSignal,237 unipCov2LocSignal,247 unipCov2LocSignal,260 unipCov2LocSignal,301 unipCov2LocSignal,335 unipCov2LocSignal,349 unipCov2LocSignal,378 unipCov2LocSignal,400 unipCov2LocSignal,431 unipCov2LocSignal,437 unipCov2LocSignal,594 unipCov2LocSignal,649 unipCov2LocSignal,657 unipCov2LocSignal,666 unipCov2LocSignal,677 unipCov2LocTransMemb,3 unipCov2LocTransMemb,6 unipCov2LocTransMemb,18 unipCov2LocTransMemb,35 unipCov2LocTransMemb,53 unipCov2LocTransMemb,118 unipCov2LocTransMemb,134 unipCov2LocTransMemb,145 unipCov2LocTransMemb,156 unipCov2LocTransMemb,167 unipCov2LocTransMemb,177 unipCov2LocTransMemb,187 unipCov2LocTransMemb,192 unipCov2LocTransMemb,204 unipCov2LocTransMemb,213 unipCov2LocTransMemb,226 unipCov2LocTransMemb,235 unipCov2LocTransMemb,237 unipCov2LocTransMemb,247 unipCov2LocTransMemb,260 unipCov2LocTransMemb,301 unipCov2LocTransMemb,335 unipCov2LocTransMemb,349 unipCov2LocTransMemb,378 unipCov2LocTransMemb,400 unipCov2LocTransMemb,431 unipCov2LocTransMemb,437 unipCov2LocTransMemb,594 unipCov2LocTransMemb,649 unipCov2LocTransMemb,657 unipCov2LocTransMemb,666 unipCov2LocTransMemb,677 unipCov2Modif,3 unipCov2Modif,9 unipCov2Modif,21 unipCov2Modif,38 unipCov2Modif,56 unipCov2Modif,121 unipCov2Modif,137 unipCov2Modif,148 unipCov2Modif,159 unipCov2Modif,170 unipCov2Modif,180 unipCov2Modif,190 unipCov2Modif,195 unipCov2Modif,207 unipCov2Modif,216 unipCov2Modif,229 unipCov2Modif,238 unipCov2Modif,240 unipCov2Modif,250 unipCov2Modif,263 unipCov2Modif,304 unipCov2Modif,338 unipCov2Modif,352 unipCov2Modif,381 unipCov2Modif,403 unipCov2Modif,434 unipCov2Modif,440 unipCov2Modif,597 unipCov2Modif,652 unipCov2Modif,660 unipCov2Modif,669 unipCov2Modif,680 unipCov2Mut,2 unipCov2Mut,6 unipCov2Mut,18 unipCov2Mut,35 unipCov2Mut,53 unipCov2Mut,118 unipCov2Mut,134 unipCov2Mut,145 unipCov2Mut,156 unipCov2Mut,167 unipCov2Mut,177 unipCov2Mut,187 unipCov2Mut,192 unipCov2Mut,204 unipCov2Mut,213 unipCov2Mut,226 unipCov2Mut,235 unipCov2Mut,237 unipCov2Mut,247 unipCov2Mut,260 unipCov2Mut,301 unipCov2Mut,335 unipCov2Mut,349 unipCov2Mut,378 unipCov2Mut,400 unipCov2Mut,431 unipCov2Mut,437 unipCov2Mut,594 unipCov2Mut,649 unipCov2Mut,657 unipCov2Mut,666 unipCov2Mut,677 unipCov2Other,3 unipCov2Other,6 unipCov2Other,18 unipCov2Other,35 unipCov2Other,53 unipCov2Other,118 unipCov2Other,134 unipCov2Other,145 unipCov2Other,156 unipCov2Other,167 unipCov2Other,177 unipCov2Other,187 unipCov2Other,192 unipCov2Other,204 unipCov2Other,213 unipCov2Other,226 unipCov2Other,235 unipCov2Other,237 unipCov2Other,247 unipCov2Other,260 unipCov2Other,301 unipCov2Other,335 unipCov2Other,349 unipCov2Other,378 unipCov2Other,400 unipCov2Other,431 unipCov2Other,437 unipCov2Other,594 unipCov2Other,649 unipCov2Other,657 unipCov2Other,666 unipCov2Other,677 unipCov2Repeat,2 unipCov2Repeat,4 unipCov2Repeat,16 unipCov2Repeat,33 unipCov2Repeat,51 unipCov2Repeat,116 unipCov2Repeat,132 unipCov2Repeat,143 unipCov2Repeat,154 unipCov2Repeat,165 unipCov2Repeat,175 unipCov2Repeat,185 unipCov2Repeat,190 unipCov2Repeat,202 unipCov2Repeat,211 unipCov2Repeat,224 unipCov2Repeat,233 unipCov2Repeat,235 unipCov2Repeat,245 unipCov2Repeat,258 unipCov2Repeat,299 unipCov2Repeat,333 unipCov2Repeat,347 unipCov2Repeat,376 unipCov2Repeat,398 unipCov2Repeat,429 unipCov2Repeat,435 unipCov2Repeat,592 unipCov2Repeat,647 unipCov2Repeat,655 unipCov2Repeat,664 unipCov2Repeat,675 unipCov2Struct,2 unipCov2Struct,8 unipCov2Struct,20 unipCov2Struct,37 unipCov2Struct,55 unipCov2Struct,120 unipCov2Struct,136 unipCov2Struct,147 unipCov2Struct,158 unipCov2Struct,169 unipCov2Struct,179 unipCov2Struct,189 unipCov2Struct,194 unipCov2Struct,206 unipCov2Struct,215 unipCov2Struct,228 unipCov2Struct,237 unipCov2Struct,239 unipCov2Struct,249 unipCov2Struct,262 unipCov2Struct,303 unipCov2Struct,337 unipCov2Struct,351 unipCov2Struct,380 unipCov2Struct,402 unipCov2Struct,433 unipCov2Struct,439 unipCov2Struct,596 unipCov2Struct,651 unipCov2Struct,659 unipCov2Struct,668 unipCov2Struct,679 unipstructcov2.bb unipCov2Chain,599 unipCov2DisulfBond,595 unipCov2Domain,594 unipCov2LocCytopl,594 unipCov2LocExtra,594 unipCov2LocSignal,595 unipCov2LocTransMemb,595 unipCov2Modif,598 unipCov2Mut,595 unipCov2Other,595 unipCov2Repeat,593 unipCov2Struct,597 unique poranHla1,92 poranHla2,92 unit contacts,204 contacts,220 united variantMuts,203 variantMuts,275 univ igg,15 igm,15 pbmShanghai,24 universal unipCov2AliSwissprot,449 unipCov2Chain,678 unipCov2DisulfBond,674 unipCov2Domain,673 unipCov2Interest,332 unipCov2LocCytopl,673 unipCov2LocExtra,673 unipCov2LocSignal,674 unipCov2LocTransMemb,674 unipCov2Modif,677 unipCov2Mut,674 unipCov2Other,674 unipCov2Repeat,672 unipCov2Struct,676 university cas13Crispr,488 crisprDet,119 multiz7way,1242 primers,148 pyle,26 resist,47 rfam,118 rfam,139 spikeMuts,367 spikeMuts,403 strainCons119way,2620 strainCons44way,2215 treangen,202 vaccines,53 vaccines,69 vaccines,622 variantMuts,1197 unless cpgIslandExt,119 cpgIslandExtUnmasked,122 cpgIslandSuper,119 sarsCov2Phylo,103 sarsCov2PhyloPub,116 unlike IgG_Z-score-_COVID-19_patients,66 IgM_Z-score-_COVID-19_patients,66 bpmIggCovidSum,75 bpmIgmCovidSum,75 pbm,75 strainCons119way,1927 strainCons44way,1522 unlikely phyloGenes,179 unmasked cpgIslandExt,169 cpgIslandExt,208 cpgIslandExt,315 cpgIslandExt,491 cpgIslandExtUnmasked,1 cpgIslandExtUnmasked,172 cpgIslandExtUnmasked,211 cpgIslandExtUnmasked,318 cpgIslandExtUnmasked,494 cpgIslandSuper,169 cpgIslandSuper,208 cpgIslandSuper,315 cpgIslandSuper,491 unpublished cpgIslandExt,602 cpgIslandExtUnmasked,605 cpgIslandSuper,602 nextstrainFreq,284 nextstrainSamples,936 sarsCov2Phylo,886 sarsCov2PhyloPub,992 unusual pond,279 up PhyloCSF_smooth,348 PhyloCSFpower,363 Q0_tracks,888 Q0_tracks,975 Q1_tracks,890 Q1_tracks,977 Q2_tracks,890 Q2_tracks,977 Q3_tracks,890 Q3_tracks,977 galaxyEna,890 galaxyEna,977 galaxyEnaQ0Ba-1,886 galaxyEnaQ0Ba-1,973 galaxyEnaQ0Ba-1-1,886 galaxyEnaQ0Ba-1-1,973 galaxyEnaQ0Ba-1-1-11,886 galaxyEnaQ0Ba-1-1-11,973 galaxyEnaQ0Ba-1-17,886 galaxyEnaQ0Ba-1-17,973 galaxyEnaQ0Ba-2,886 galaxyEnaQ0Ba-2,973 galaxyEnaQ1Ay-4,886 galaxyEnaQ1Ay-4,973 galaxyEnaQ1Ay-4-2,886 galaxyEnaQ1Ay-4-2,973 galaxyEnaQ1Ay-4-2-2,886 galaxyEnaQ1Ay-4-2-2,973 galaxyEnaQ1Ay-43,886 galaxyEnaQ1Ay-43,973 galaxyEnaQ1Ba-1-17,886 galaxyEnaQ1Ba-1-17,973 galaxyEnaQ2Ay-120,886 galaxyEnaQ2Ay-120,973 galaxyEnaQ2Ay-122,886 galaxyEnaQ2Ay-122,973 galaxyEnaQ2Ay-4,886 galaxyEnaQ2Ay-4,973 galaxyEnaQ2Ay-5,886 galaxyEnaQ2Ay-5,973 galaxyEnaQ2Ay-6,886 galaxyEnaQ2Ay-6,973 galaxyEnaQ3Ay-4,886 galaxyEnaQ3Ay-4,973 galaxyEnaQ3Ay-5,886 galaxyEnaQ3Ay-5,973 galaxyEnaQ3Ay-9,886 galaxyEnaQ3Ay-9,973 galaxyEnaQ3B-1-1-7,886 galaxyEnaQ3B-1-1-7,973 galaxyEnaQ3B-1-617-2,886 galaxyEnaQ3B-1-617-2,973 gold,76 nextstrainFreq,115 pbmShanghai,343 update Q0_tracks,312 Q0_tracks,327 Q0_tracks,353 Q1_tracks,314 Q1_tracks,329 Q1_tracks,355 Q2_tracks,314 Q2_tracks,329 Q2_tracks,355 Q3_tracks,314 Q3_tracks,329 Q3_tracks,355 galaxyEna,314 galaxyEna,329 galaxyEna,355 galaxyEnaQ0Ba-1,310 galaxyEnaQ0Ba-1,325 galaxyEnaQ0Ba-1,351 galaxyEnaQ0Ba-1-1,310 galaxyEnaQ0Ba-1-1,325 galaxyEnaQ0Ba-1-1,351 galaxyEnaQ0Ba-1-1-11,310 galaxyEnaQ0Ba-1-1-11,325 galaxyEnaQ0Ba-1-1-11,351 galaxyEnaQ0Ba-1-17,310 galaxyEnaQ0Ba-1-17,325 galaxyEnaQ0Ba-1-17,351 galaxyEnaQ0Ba-2,310 galaxyEnaQ0Ba-2,325 galaxyEnaQ0Ba-2,351 galaxyEnaQ1Ay-4,310 galaxyEnaQ1Ay-4,325 galaxyEnaQ1Ay-4,351 galaxyEnaQ1Ay-4-2,310 galaxyEnaQ1Ay-4-2,325 galaxyEnaQ1Ay-4-2,351 galaxyEnaQ1Ay-4-2-2,310 galaxyEnaQ1Ay-4-2-2,325 galaxyEnaQ1Ay-4-2-2,351 galaxyEnaQ1Ay-43,310 galaxyEnaQ1Ay-43,325 galaxyEnaQ1Ay-43,351 galaxyEnaQ1Ba-1-17,310 galaxyEnaQ1Ba-1-17,325 galaxyEnaQ1Ba-1-17,351 galaxyEnaQ2Ay-120,310 galaxyEnaQ2Ay-120,325 galaxyEnaQ2Ay-120,351 galaxyEnaQ2Ay-122,310 galaxyEnaQ2Ay-122,325 galaxyEnaQ2Ay-122,351 galaxyEnaQ2Ay-4,310 galaxyEnaQ2Ay-4,325 galaxyEnaQ2Ay-4,351 galaxyEnaQ2Ay-5,310 galaxyEnaQ2Ay-5,325 galaxyEnaQ2Ay-5,351 galaxyEnaQ2Ay-6,310 galaxyEnaQ2Ay-6,325 galaxyEnaQ2Ay-6,351 galaxyEnaQ3Ay-4,310 galaxyEnaQ3Ay-4,325 galaxyEnaQ3Ay-4,351 galaxyEnaQ3Ay-5,310 galaxyEnaQ3Ay-5,325 galaxyEnaQ3Ay-5,351 galaxyEnaQ3Ay-9,310 galaxyEnaQ3Ay-9,325 galaxyEnaQ3Ay-9,351 galaxyEnaQ3B-1-1-7,310 galaxyEnaQ3B-1-1-7,325 galaxyEnaQ3B-1-1-7,351 galaxyEnaQ3B-1-617-2,310 galaxyEnaQ3B-1-617-2,325 galaxyEnaQ3B-1-617-2,351 spikeMuts,292 variantMuts,1104 updated phyloGenes,453 pond,27 pond,51 primers,383 problematicSites,575 sarsCov2Phylo,1086 sarsCov2PhyloPub,1206 spikeMuts,261 variantMuts,1088 updates publicAnnots,48 uploaded microdel,21 upon vaccines,118 upper Q0_tracks,588 Q1_tracks,590 Q2_tracks,590 Q3_tracks,590 galaxyEna,590 galaxyEnaQ0Ba-1,586 galaxyEnaQ0Ba-1-1,586 galaxyEnaQ0Ba-1-1-11,586 galaxyEnaQ0Ba-1-17,586 galaxyEnaQ0Ba-2,586 galaxyEnaQ1Ay-4,586 galaxyEnaQ1Ay-4-2,586 galaxyEnaQ1Ay-4-2-2,586 galaxyEnaQ1Ay-43,586 galaxyEnaQ1Ba-1-17,586 galaxyEnaQ2Ay-120,586 galaxyEnaQ2Ay-122,586 galaxyEnaQ2Ay-4,586 galaxyEnaQ2Ay-5,586 galaxyEnaQ2Ay-6,586 galaxyEnaQ3Ay-4,586 galaxyEnaQ3Ay-5,586 galaxyEnaQ3Ay-9,586 galaxyEnaQ3B-1-1-7,586 galaxyEnaQ3B-1-617-2,586 uridine vaccines,86 ursula vaccines,574 us Q0_tracks,1166 Q1_tracks,1168 Q2_tracks,1168 Q3_tracks,1168 crisprDet,158 galaxyEna,1168 galaxyEnaQ0Ba-1,1164 galaxyEnaQ0Ba-1-1,1164 galaxyEnaQ0Ba-1-1-11,1164 galaxyEnaQ0Ba-1-17,1164 galaxyEnaQ0Ba-2,1164 galaxyEnaQ1Ay-4,1164 galaxyEnaQ1Ay-4-2,1164 galaxyEnaQ1Ay-4-2-2,1164 galaxyEnaQ1Ay-43,1164 galaxyEnaQ1Ba-1-17,1164 galaxyEnaQ2Ay-120,1164 galaxyEnaQ2Ay-122,1164 galaxyEnaQ2Ay-4,1164 galaxyEnaQ2Ay-5,1164 galaxyEnaQ2Ay-6,1164 galaxyEnaQ3Ay-4,1164 galaxyEnaQ3Ay-5,1164 galaxyEnaQ3Ay-9,1164 galaxyEnaQ3B-1-1-7,1164 galaxyEnaQ3B-1-617-2,1164 microdel,127 ncbiGeneBGP,189 ncbiProducts,205 pond,54 poranHla1,28 poranHla2,28 publicAnnots,66 publicAnnots,78 us-cdc primers,172 us-cdc-control_rp-f primers,103 us-cdc-control_rp-p primers,101 us-cdc-control_rp-r primers,102 usa multiz7way,1243 poranHla1,64 poranHla2,64 primers,174 strainCons119way,1140 strainCons119way,1209 strainCons119way,1262 strainCons119way,1449 strainCons119way,2621 strainCons44way,2216 variantAaMutsV2_B_1_429,7 variantAaMutsV2_B_1_526,7 variantMuts,188 variantMuts,665 variantMuts,696 variantMuts,1409 variantNucMutsV2_B_1_429,7 variantNucMutsV2_B_1_526,7 usa-az1 strainCons119way,1233 usa-ca1 strainCons119way,1256 usa-ca2 strainCons119way,1114 usa-ca3 strainCons119way,1147 usa-ca5 strainCons119way,1111 usa-ca7 strainCons119way,1192 usa-ca8 strainCons119way,1076 usa-ca9 strainCons119way,1079 usa-il1 strainCons119way,1269 usa-ma1 strainCons119way,1211 usa-tx1 strainCons119way,1236 usa-wa1 SHAPE,9 pyle,234 strainCons119way,1230 usa-wi1 strainCons119way,1108 usa_coverage poranHla1,70 poranHla2,70 usability sarsCov2Phylo,1036 sarsCov2PhyloPub,1156 usage nextstrainFreq,269 nextstrainSamples,839 nextstrainSamples,921 sarsCov2Phylo,871 sarsCov2PhyloPub,977 use PhyloCSF_smooth,686 PhyloCSFpower,652 Starr_Bloom,46 Starr_Bloom_bind,43 gold,87 multiz7way,281 multiz7way,467 multiz7way,502 multiz7way,528 multiz7way,536 nextstrainGene,71 nextstrainGene,83 nextstrainSamples,143 phyloGenes,477 pond,72 primers,225 rosettaMhc,51 strainCons119way,634 strainCons119way,817 strainCons119way,852 strainCons119way,878 strainCons119way,886 strainCons44way,582 strainCons44way,765 strainCons44way,800 strainCons44way,826 strainCons44way,834 used Calu3_07hpi,287 IgG_Z-score-_COVID-19_patients,166 IgG_Z-score-_COVID-19_patients,245 IgG_Z-score-_COVID-19_patients,355 IgM_Z-score-_COVID-19_patients,166 IgM_Z-score-_COVID-19_patients,245 IgM_Z-score-_COVID-19_patients,355 ORFs,285 Q0_tracks,121 Q0_tracks,130 Q0_tracks,169 Q0_tracks,386 Q0_tracks,926 Q0_tracks,967 Q1_tracks,123 Q1_tracks,132 Q1_tracks,171 Q1_tracks,388 Q1_tracks,928 Q1_tracks,969 Q2_tracks,123 Q2_tracks,132 Q2_tracks,171 Q2_tracks,388 Q2_tracks,928 Q2_tracks,969 Q3_tracks,123 Q3_tracks,132 Q3_tracks,171 Q3_tracks,388 Q3_tracks,928 Q3_tracks,969 Vero6_05hpi,287 Vero6_24hpi,287 abEscape,65 abEscape,849 addgene,231 artic,138 articV4,138 articV4_1,151 augustusGene,146 augustusGene,174 augustusGene,183 augustusGene,231 augustusGene,246 bloomEscMabAvg,69 bloomEscMabAvg,853 bloomEscMax,75 bloomEscMax,859 bloomEscSerumAvg,70 bloomEscSerumAvg,854 bloomEscTop,73 bloomEscTop,857 bpmIggCovidSum,175 bpmIggCovidSum,254 bpmIggCovidSum,364 bpmIgmCovidSum,175 bpmIgmCovidSum,254 bpmIgmCovidSum,364 cas13Crispr,322 cas13Crispr,423 contacts,351 cpgIslandExt,308 cpgIslandExtUnmasked,311 cpgIslandSuper,308 epitopes,60 epitopes,213 escape,72 escape,856 galaxyEna,123 galaxyEna,132 galaxyEna,171 galaxyEna,388 galaxyEna,928 galaxyEna,969 galaxyEnaQ0Ba-1,119 galaxyEnaQ0Ba-1,128 galaxyEnaQ0Ba-1,167 galaxyEnaQ0Ba-1,384 galaxyEnaQ0Ba-1,924 galaxyEnaQ0Ba-1,965 galaxyEnaQ0Ba-1-1,119 galaxyEnaQ0Ba-1-1,128 galaxyEnaQ0Ba-1-1,167 galaxyEnaQ0Ba-1-1,384 galaxyEnaQ0Ba-1-1,924 galaxyEnaQ0Ba-1-1,965 galaxyEnaQ0Ba-1-1-11,119 galaxyEnaQ0Ba-1-1-11,128 galaxyEnaQ0Ba-1-1-11,167 galaxyEnaQ0Ba-1-1-11,384 galaxyEnaQ0Ba-1-1-11,924 galaxyEnaQ0Ba-1-1-11,965 galaxyEnaQ0Ba-1-17,119 galaxyEnaQ0Ba-1-17,128 galaxyEnaQ0Ba-1-17,167 galaxyEnaQ0Ba-1-17,384 galaxyEnaQ0Ba-1-17,924 galaxyEnaQ0Ba-1-17,965 galaxyEnaQ0Ba-2,119 galaxyEnaQ0Ba-2,128 galaxyEnaQ0Ba-2,167 galaxyEnaQ0Ba-2,384 galaxyEnaQ0Ba-2,924 galaxyEnaQ0Ba-2,965 galaxyEnaQ1Ay-4,119 galaxyEnaQ1Ay-4,128 galaxyEnaQ1Ay-4,167 galaxyEnaQ1Ay-4,384 galaxyEnaQ1Ay-4,924 galaxyEnaQ1Ay-4,965 galaxyEnaQ1Ay-4-2,119 galaxyEnaQ1Ay-4-2,128 galaxyEnaQ1Ay-4-2,167 galaxyEnaQ1Ay-4-2,384 galaxyEnaQ1Ay-4-2,924 galaxyEnaQ1Ay-4-2,965 galaxyEnaQ1Ay-4-2-2,119 galaxyEnaQ1Ay-4-2-2,128 galaxyEnaQ1Ay-4-2-2,167 galaxyEnaQ1Ay-4-2-2,384 galaxyEnaQ1Ay-4-2-2,924 galaxyEnaQ1Ay-4-2-2,965 galaxyEnaQ1Ay-43,119 galaxyEnaQ1Ay-43,128 galaxyEnaQ1Ay-43,167 galaxyEnaQ1Ay-43,384 galaxyEnaQ1Ay-43,924 galaxyEnaQ1Ay-43,965 galaxyEnaQ1Ba-1-17,119 galaxyEnaQ1Ba-1-17,128 galaxyEnaQ1Ba-1-17,167 galaxyEnaQ1Ba-1-17,384 galaxyEnaQ1Ba-1-17,924 galaxyEnaQ1Ba-1-17,965 galaxyEnaQ2Ay-120,119 galaxyEnaQ2Ay-120,128 galaxyEnaQ2Ay-120,167 galaxyEnaQ2Ay-120,384 galaxyEnaQ2Ay-120,924 galaxyEnaQ2Ay-120,965 galaxyEnaQ2Ay-122,119 galaxyEnaQ2Ay-122,128 galaxyEnaQ2Ay-122,167 galaxyEnaQ2Ay-122,384 galaxyEnaQ2Ay-122,924 galaxyEnaQ2Ay-122,965 galaxyEnaQ2Ay-4,119 galaxyEnaQ2Ay-4,128 galaxyEnaQ2Ay-4,167 galaxyEnaQ2Ay-4,384 galaxyEnaQ2Ay-4,924 galaxyEnaQ2Ay-4,965 galaxyEnaQ2Ay-5,119 galaxyEnaQ2Ay-5,128 galaxyEnaQ2Ay-5,167 galaxyEnaQ2Ay-5,384 galaxyEnaQ2Ay-5,924 galaxyEnaQ2Ay-5,965 galaxyEnaQ2Ay-6,119 galaxyEnaQ2Ay-6,128 galaxyEnaQ2Ay-6,167 galaxyEnaQ2Ay-6,384 galaxyEnaQ2Ay-6,924 galaxyEnaQ2Ay-6,965 galaxyEnaQ3Ay-4,119 galaxyEnaQ3Ay-4,128 galaxyEnaQ3Ay-4,167 galaxyEnaQ3Ay-4,384 galaxyEnaQ3Ay-4,924 galaxyEnaQ3Ay-4,965 galaxyEnaQ3Ay-5,119 galaxyEnaQ3Ay-5,128 galaxyEnaQ3Ay-5,167 galaxyEnaQ3Ay-5,384 galaxyEnaQ3Ay-5,924 galaxyEnaQ3Ay-5,965 galaxyEnaQ3Ay-9,119 galaxyEnaQ3Ay-9,128 galaxyEnaQ3Ay-9,167 galaxyEnaQ3Ay-9,384 galaxyEnaQ3Ay-9,924 galaxyEnaQ3Ay-9,965 galaxyEnaQ3B-1-1-7,119 galaxyEnaQ3B-1-1-7,128 galaxyEnaQ3B-1-1-7,167 galaxyEnaQ3B-1-1-7,384 galaxyEnaQ3B-1-1-7,924 galaxyEnaQ3B-1-1-7,965 galaxyEnaQ3B-1-617-2,119 galaxyEnaQ3B-1-617-2,128 galaxyEnaQ3B-1-617-2,167 galaxyEnaQ3B-1-617-2,384 galaxyEnaQ3B-1-617-2,924 galaxyEnaQ3B-1-617-2,965 genscan,159 gold,14 gordon2,55 kimIvtCov,100 kimIvtCov,110 kimRnaMod,185 kimTranscripts,83 kimTranscripts,402 mccoy,65 mccoy,849 multiz7way,460 multiz7way,491 multiz7way,587 multiz7way,665 ncbiGeneBGP,123 ncbiProducts,139 nextstrainSamples,703 pbm,175 pbm,254 pbm,364 pbmShanghai,255 pbmShanghai,269 pbmShanghai,393 phyloGenes,399 pond,194 pond,215 poranHla1,135 poranHla1,212 poranHla2,135 poranHla2,212 primers,46 pyle,207 pyle,244 rapid,113 rapid,152 rapid,292 rappuoli,72 rappuoli,856 rosettaMhc,143 rosettaMhc,350 sarsCov2Phylo,201 sarsCov2Phylo,229 sarsCov2Phylo,590 sarsCov2Phylo,648 sarsCov2PhyloPub,208 sarsCov2PhyloPub,236 sarsCov2PhyloPub,617 sarsCov2PhyloPub,672 sarsCov2PhyloPub,785 strainCons119way,167 strainCons119way,810 strainCons119way,841 strainCons119way,937 strainCons119way,1014 strainCons119way,1764 strainCons119way,1926 strainCons119way,1971 strainCons119way,2007 strainCons119way,2036 strainCons44way,115 strainCons44way,758 strainCons44way,789 strainCons44way,885 strainCons44way,962 strainCons44way,1359 strainCons44way,1521 strainCons44way,1566 strainCons44way,1602 strainCons44way,1631 swift,221 targets,159 targets,179 targets,187 transcriptome,75 transcriptome,408 treangen,161 treangen,261 unipCov2AliSwissprot,46 unipCov2AliSwissprot,250 unipCov2AliSwissprot,352 unipCov2Chain,480 unipCov2Chain,582 unipCov2DisulfBond,476 unipCov2DisulfBond,578 unipCov2Domain,475 unipCov2Domain,577 unipCov2Interest,156 unipCov2Interest,258 unipCov2LocCytopl,475 unipCov2LocCytopl,577 unipCov2LocExtra,475 unipCov2LocExtra,577 unipCov2LocSignal,476 unipCov2LocSignal,578 unipCov2LocTransMemb,476 unipCov2LocTransMemb,578 unipCov2Modif,479 unipCov2Modif,581 unipCov2Mut,476 unipCov2Mut,578 unipCov2Other,476 unipCov2Other,578 unipCov2Repeat,474 unipCov2Repeat,576 unipCov2Struct,478 unipCov2Struct,580 vaccines,381 variantMuts,906 varskip,144 weizmanOrfs,293 useful nextstrainSamples,199 usegalaxy.eu Q0_tracks,1126 Q1_tracks,1128 Q2_tracks,1128 Q3_tracks,1128 galaxyEna,1128 galaxyEnaQ0Ba-1,1124 galaxyEnaQ0Ba-1-1,1124 galaxyEnaQ0Ba-1-1-11,1124 galaxyEnaQ0Ba-1-17,1124 galaxyEnaQ0Ba-2,1124 galaxyEnaQ1Ay-4,1124 galaxyEnaQ1Ay-4-2,1124 galaxyEnaQ1Ay-4-2-2,1124 galaxyEnaQ1Ay-43,1124 galaxyEnaQ1Ba-1-17,1124 galaxyEnaQ2Ay-120,1124 galaxyEnaQ2Ay-122,1124 galaxyEnaQ2Ay-4,1124 galaxyEnaQ2Ay-5,1124 galaxyEnaQ2Ay-6,1124 galaxyEnaQ3Ay-4,1124 galaxyEnaQ3Ay-5,1124 galaxyEnaQ3Ay-9,1124 galaxyEnaQ3B-1-1-7,1124 galaxyEnaQ3B-1-617-2,1124 usegalaxy.org Q0_tracks,1124 Q1_tracks,1126 Q2_tracks,1126 Q3_tracks,1126 galaxyEna,1126 galaxyEnaQ0Ba-1,1122 galaxyEnaQ0Ba-1-1,1122 galaxyEnaQ0Ba-1-1-11,1122 galaxyEnaQ0Ba-1-17,1122 galaxyEnaQ0Ba-2,1122 galaxyEnaQ1Ay-4,1122 galaxyEnaQ1Ay-4-2,1122 galaxyEnaQ1Ay-4-2-2,1122 galaxyEnaQ1Ay-43,1122 galaxyEnaQ1Ba-1-17,1122 galaxyEnaQ2Ay-120,1122 galaxyEnaQ2Ay-122,1122 galaxyEnaQ2Ay-4,1122 galaxyEnaQ2Ay-5,1122 galaxyEnaQ2Ay-6,1122 galaxyEnaQ3Ay-4,1122 galaxyEnaQ3Ay-5,1122 galaxyEnaQ3Ay-9,1122 galaxyEnaQ3B-1-1-7,1122 galaxyEnaQ3B-1-617-2,1122 user nextstrainClade,32 nextstrainFreq,32 nextstrainGene,30 nextstrainParsimony,49 nextstrainSamples,45 nextstrainSamples,551 users nextstrainSamples,750 sarsCov2Phylo,854 treangen,168 uses rapid,44 strainCons119way,1838 strainCons44way,1433 usher sarsCov2PhyloPub,804 sarsCov2PhyloPub,1242 using Calu3_07hpi,210 ORFs,208 PhyloCSF_smooth,142 PhyloCSF_smooth,404 PhyloCSF_smooth,411 PhyloCSF_smooth,433 PhyloCSF_smooth,544 PhyloCSFpower,157 PhyloCSFpower,419 PhyloCSFpower,426 PhyloCSFpower,448 PhyloCSFpower,559 Starr_Bloom,183 Starr_Bloom_bind,177 Vero6_05hpi,210 Vero6_24hpi,210 abEscape,82 abEscape,256 abEscape,614 addgene,189 addgene,200 augustusGene,294 bloomEscMabAvg,86 bloomEscMabAvg,260 bloomEscMabAvg,618 bloomEscMax,92 bloomEscMax,266 bloomEscMax,624 bloomEscSerumAvg,87 bloomEscSerumAvg,261 bloomEscSerumAvg,619 bloomEscTop,90 bloomEscTop,264 bloomEscTop,622 cas13Crispr,20 cas13Crispr,116 cas13Crispr,227 cas13Crispr,236 contacts,133 cpgIslandExt,516 cpgIslandExt,589 cpgIslandExtUnmasked,519 cpgIslandExtUnmasked,592 cpgIslandSuper,516 cpgIslandSuper,589 epitopes,28 epitopes,285 escape,89 escape,263 escape,621 gordon2,153 icshape,140 iedb,53 mccoy,82 mccoy,256 mccoy,614 microdel,105 multiz7way,44 multiz7way,67 multiz7way,140 multiz7way,557 multiz7way,565 multiz7way,582 multiz7way,644 multiz7way,737 multiz7way,818 nextstrainClade,52 nextstrainFreq,229 nextstrainFreq,321 nextstrainParsimony,330 nextstrainSamples,338 nextstrainSamples,592 nextstrainSamples,810 nextstrainSamples,967 phyloGenes,27 poranHla1,57 poranHla2,57 potPathoIndel,135 pyle,41 pyle,165 rapid,125 rapid,354 rappuoli,89 rappuoli,263 rappuoli,621 recomb,97 recomb,205 recomb,256 rfam,14 rfam,44 rfam,94 rosettaMhc,203 rosettaMhc,263 rosettaMhc,287 rosettaMhc,293 sarsCov2Phylo,343 sarsCov2Phylo,607 sarsCov2Phylo,661 sarsCov2Phylo,696 sarsCov2Phylo,917 sarsCov2PhyloPub,354 sarsCov2PhyloPub,634 sarsCov2PhyloPub,685 sarsCov2PhyloPub,803 sarsCov2PhyloPub,1023 strainCons119way,117 strainCons119way,137 strainCons119way,408 strainCons119way,489 strainCons119way,907 strainCons119way,915 strainCons119way,932 strainCons119way,993 strainCons119way,1497 strainCons119way,1716 strainCons119way,1730 strainCons119way,2145 strainCons119way,2196 strainCons44way,65 strainCons44way,85 strainCons44way,356 strainCons44way,437 strainCons44way,855 strainCons44way,863 strainCons44way,880 strainCons44way,941 strainCons44way,1167 strainCons44way,1311 strainCons44way,1325 strainCons44way,1740 strainCons44way,1791 swift,41 targets,73 transcriptome,251 transcriptome,278 unipCov2AliSwissprot,202 unipCov2Chain,80 unipCov2Chain,102 unipCov2Chain,455 unipCov2DisulfBond,76 unipCov2DisulfBond,98 unipCov2DisulfBond,451 unipCov2Domain,75 unipCov2Domain,97 unipCov2Domain,450 unipCov2Interest,131 unipCov2LocCytopl,75 unipCov2LocCytopl,97 unipCov2LocCytopl,450 unipCov2LocExtra,75 unipCov2LocExtra,97 unipCov2LocExtra,450 unipCov2LocSignal,76 unipCov2LocSignal,98 unipCov2LocSignal,451 unipCov2LocTransMemb,76 unipCov2LocTransMemb,98 unipCov2LocTransMemb,451 unipCov2Modif,79 unipCov2Modif,101 unipCov2Modif,454 unipCov2Mut,76 unipCov2Mut,98 unipCov2Mut,451 unipCov2Other,76 unipCov2Other,98 unipCov2Other,451 unipCov2Repeat,74 unipCov2Repeat,96 unipCov2Repeat,449 unipCov2Struct,78 unipCov2Struct,100 unipCov2Struct,453 variantMuts,798 variantMuts,839 variantMuts,854 variantMuts,970 weizmanOrfs,216 ustat windowmaskerSdust,66 usual Q0_tracks,1274 Q1_tracks,1276 Q2_tracks,1276 Q3_tracks,1276 galaxyEna,1276 galaxyEnaQ0Ba-1,1272 galaxyEnaQ0Ba-1-1,1272 galaxyEnaQ0Ba-1-1-11,1272 galaxyEnaQ0Ba-1-17,1272 galaxyEnaQ0Ba-2,1272 galaxyEnaQ1Ay-4,1272 galaxyEnaQ1Ay-4-2,1272 galaxyEnaQ1Ay-4-2-2,1272 galaxyEnaQ1Ay-43,1272 galaxyEnaQ1Ba-1-17,1272 galaxyEnaQ2Ay-120,1272 galaxyEnaQ2Ay-122,1272 galaxyEnaQ2Ay-4,1272 galaxyEnaQ2Ay-5,1272 galaxyEnaQ2Ay-6,1272 galaxyEnaQ3Ay-4,1272 galaxyEnaQ3Ay-5,1272 galaxyEnaQ3Ay-9,1272 galaxyEnaQ3B-1-1-7,1272 galaxyEnaQ3B-1-617-2,1272 usually PhyloCSF_smooth,356 PhyloCSFpower,371 problematicSites,346 utilities IgG_Z-score-_COVID-19_patients,348 IgM_Z-score-_COVID-19_patients,348 artic,131 articV4,131 articV4_1,144 bpmIggCovidSum,357 bpmIgmCovidSum,357 cas13Crispr,416 contacts,344 kimRnaMod,178 kimTranscripts,395 ncbiGeneBGP,116 ncbiProducts,132 pbm,357 pbmShanghai,474 phyloGenes,392 poranHla1,205 poranHla2,205 rapid,285 swift,214 transcriptome,401 varskip,137 utilizing poranHla1,285 poranHla2,285 utils cpgIslandExt,565 cpgIslandExtUnmasked,568 cpgIslandSuper,565 utr rfam,35 rfam,145 utrs kimTranscripts,123 transcriptome,115 v cd8escape,192 cd8escape,210 nextstrainFreq,415 nextstrainSamples,1035 potPathoIndel,218 sarsCov2Phylo,246 sarsCov2Phylo,942 sarsCov2PhyloPub,253 sarsCov2PhyloPub,1062 variantMuts,1249 v-029 strainCons119way,1162 v1 variantMuts,271 varskip,23 v1122 spikeMuts,142 v1a varskip1a,5 varskipVsl1a,7 v2 pond,249 variantMuts,288 varskip,25 v3 artic,3 artic,5 variantMuts,306 v3.1 augustusGene,7 v4 articV4,3 articV4,5 v4.1 articV4_1,3 articV4_1,5 v987p vaccines,459 v_bind_avg V_bind_avg,1 v_expr_avg V_expr_avg_Expression,1 vaccine epitopes,166 poranHla1,276 poranHla2,276 spikeMuts,31 spikeMuts,54 vaccines,21 vaccines,139 vaccines,179 vaccines,462 vaccines,541 vaccines,548 variantMuts,112 variantMuts,133 vaccines vaccines,1 vaccines,3 vaccines,77 vaccines,376 vaccines,471 vaccines,522 vaccines,601 vaccines,633 validated crisprDet,44 iedb,1 iedb,5 iedb,52 iedb,73 kimTranscripts,167 microdel,68 microdel,109 validation genscan,107 value Q0_tracks,571 Q1_tracks,573 Q2_tracks,573 Q3_tracks,573 Starr_Bloom,186 Starr_Bloom_bind,180 addgene,206 galaxyEna,573 galaxyEnaQ0Ba-1,569 galaxyEnaQ0Ba-1-1,569 galaxyEnaQ0Ba-1-1-11,569 galaxyEnaQ0Ba-1-17,569 galaxyEnaQ0Ba-2,569 galaxyEnaQ1Ay-4,569 galaxyEnaQ1Ay-4-2,569 galaxyEnaQ1Ay-4-2-2,569 galaxyEnaQ1Ay-43,569 galaxyEnaQ1Ba-1-17,569 galaxyEnaQ2Ay-120,569 galaxyEnaQ2Ay-122,569 galaxyEnaQ2Ay-4,569 galaxyEnaQ2Ay-5,569 galaxyEnaQ2Ay-6,569 galaxyEnaQ3Ay-4,569 galaxyEnaQ3Ay-5,569 galaxyEnaQ3Ay-9,569 galaxyEnaQ3B-1-1-7,569 galaxyEnaQ3B-1-617-2,569 pyle,135 strainCons119way,1855 strainCons44way,1450 values IgG_Z-score-_COVID-19_patients,152 IgG_Z-score-_COVID-19_patients,169 IgG_Z-score-_COVID-19_patients,232 IgG_Z-score-_COVID-19_patients,236 IgG_Z-score-_COVID-19_patients,254 IgM_Z-score-_COVID-19_patients,152 IgM_Z-score-_COVID-19_patients,169 IgM_Z-score-_COVID-19_patients,232 IgM_Z-score-_COVID-19_patients,236 IgM_Z-score-_COVID-19_patients,254 Starr_Bloom,193 Starr_Bloom_bind,187 abEscape,457 abEscape,619 bloomEscMabAvg,461 bloomEscMabAvg,623 bloomEscMax,467 bloomEscMax,629 bloomEscSerumAvg,462 bloomEscSerumAvg,624 bloomEscTop,465 bloomEscTop,627 bpmIggCovidSum,161 bpmIggCovidSum,178 bpmIggCovidSum,241 bpmIggCovidSum,245 bpmIggCovidSum,263 bpmIgmCovidSum,161 bpmIgmCovidSum,178 bpmIgmCovidSum,241 bpmIgmCovidSum,245 bpmIgmCovidSum,263 contacts,246 escape,464 escape,626 mccoy,457 mccoy,619 multiz7way,142 pbm,161 pbm,178 pbm,241 pbm,245 pbm,263 pbmShanghai,233 pbmShanghai,322 pbmShanghai,340 pbmShanghai,384 rappuoli,464 rappuoli,626 strainCons119way,357 strainCons119way,491 strainCons119way,2136 strainCons44way,305 strainCons44way,439 strainCons44way,1731 van Q0_tracks,1231 Q0_tracks,1301 Q1_tracks,1233 Q1_tracks,1303 Q2_tracks,1233 Q2_tracks,1303 Q3_tracks,1233 Q3_tracks,1303 galaxyEna,1233 galaxyEna,1303 galaxyEnaQ0Ba-1,1229 galaxyEnaQ0Ba-1,1299 galaxyEnaQ0Ba-1-1,1229 galaxyEnaQ0Ba-1-1,1299 galaxyEnaQ0Ba-1-1-11,1229 galaxyEnaQ0Ba-1-1-11,1299 galaxyEnaQ0Ba-1-17,1229 galaxyEnaQ0Ba-1-17,1299 galaxyEnaQ0Ba-2,1229 galaxyEnaQ0Ba-2,1299 galaxyEnaQ1Ay-4,1229 galaxyEnaQ1Ay-4,1299 galaxyEnaQ1Ay-4-2,1229 galaxyEnaQ1Ay-4-2,1299 galaxyEnaQ1Ay-4-2-2,1229 galaxyEnaQ1Ay-4-2-2,1299 galaxyEnaQ1Ay-43,1229 galaxyEnaQ1Ay-43,1299 galaxyEnaQ1Ba-1-17,1229 galaxyEnaQ1Ba-1-17,1299 galaxyEnaQ2Ay-120,1229 galaxyEnaQ2Ay-120,1299 galaxyEnaQ2Ay-122,1229 galaxyEnaQ2Ay-122,1299 galaxyEnaQ2Ay-4,1229 galaxyEnaQ2Ay-4,1299 galaxyEnaQ2Ay-5,1229 galaxyEnaQ2Ay-5,1299 galaxyEnaQ2Ay-6,1229 galaxyEnaQ2Ay-6,1299 galaxyEnaQ3Ay-4,1229 galaxyEnaQ3Ay-4,1299 galaxyEnaQ3Ay-5,1229 galaxyEnaQ3Ay-5,1299 galaxyEnaQ3Ay-9,1229 galaxyEnaQ3Ay-9,1299 galaxyEnaQ3B-1-1-7,1229 galaxyEnaQ3B-1-1-7,1299 galaxyEnaQ3B-1-617-2,1229 galaxyEnaQ3B-1-617-2,1299 vanblargan abEscape,775 bloomEscMabAvg,779 bloomEscMax,785 bloomEscSerumAvg,780 bloomEscTop,783 escape,782 mccoy,775 rappuoli,782 variant Q0_tracks,139 Q0_tracks,464 Q0_tracks,865 Q0_tracks,910 Q1_tracks,141 Q1_tracks,466 Q1_tracks,867 Q1_tracks,912 Q2_tracks,141 Q2_tracks,466 Q2_tracks,867 Q2_tracks,912 Q3_tracks,141 Q3_tracks,466 Q3_tracks,867 Q3_tracks,912 abEscape,299 articV4_1,41 bloomEscMabAvg,303 bloomEscMax,309 bloomEscSerumAvg,304 bloomEscTop,307 escape,306 galaxyEna,141 galaxyEna,466 galaxyEna,867 galaxyEna,912 galaxyEnaQ0Ba-1,137 galaxyEnaQ0Ba-1,462 galaxyEnaQ0Ba-1,863 galaxyEnaQ0Ba-1,908 galaxyEnaQ0Ba-1-1,137 galaxyEnaQ0Ba-1-1,462 galaxyEnaQ0Ba-1-1,863 galaxyEnaQ0Ba-1-1,908 galaxyEnaQ0Ba-1-1-11,137 galaxyEnaQ0Ba-1-1-11,462 galaxyEnaQ0Ba-1-1-11,863 galaxyEnaQ0Ba-1-1-11,908 galaxyEnaQ0Ba-1-17,137 galaxyEnaQ0Ba-1-17,462 galaxyEnaQ0Ba-1-17,863 galaxyEnaQ0Ba-1-17,908 galaxyEnaQ0Ba-2,137 galaxyEnaQ0Ba-2,462 galaxyEnaQ0Ba-2,863 galaxyEnaQ0Ba-2,908 galaxyEnaQ1Ay-4,137 galaxyEnaQ1Ay-4,462 galaxyEnaQ1Ay-4,863 galaxyEnaQ1Ay-4,908 galaxyEnaQ1Ay-4-2,137 galaxyEnaQ1Ay-4-2,462 galaxyEnaQ1Ay-4-2,863 galaxyEnaQ1Ay-4-2,908 galaxyEnaQ1Ay-4-2-2,137 galaxyEnaQ1Ay-4-2-2,462 galaxyEnaQ1Ay-4-2-2,863 galaxyEnaQ1Ay-4-2-2,908 galaxyEnaQ1Ay-43,137 galaxyEnaQ1Ay-43,462 galaxyEnaQ1Ay-43,863 galaxyEnaQ1Ay-43,908 galaxyEnaQ1Ba-1-17,137 galaxyEnaQ1Ba-1-17,462 galaxyEnaQ1Ba-1-17,863 galaxyEnaQ1Ba-1-17,908 galaxyEnaQ2Ay-120,137 galaxyEnaQ2Ay-120,462 galaxyEnaQ2Ay-120,863 galaxyEnaQ2Ay-120,908 galaxyEnaQ2Ay-122,137 galaxyEnaQ2Ay-122,462 galaxyEnaQ2Ay-122,863 galaxyEnaQ2Ay-122,908 galaxyEnaQ2Ay-4,137 galaxyEnaQ2Ay-4,462 galaxyEnaQ2Ay-4,863 galaxyEnaQ2Ay-4,908 galaxyEnaQ2Ay-5,137 galaxyEnaQ2Ay-5,462 galaxyEnaQ2Ay-5,863 galaxyEnaQ2Ay-5,908 galaxyEnaQ2Ay-6,137 galaxyEnaQ2Ay-6,462 galaxyEnaQ2Ay-6,863 galaxyEnaQ2Ay-6,908 galaxyEnaQ3Ay-4,137 galaxyEnaQ3Ay-4,462 galaxyEnaQ3Ay-4,863 galaxyEnaQ3Ay-4,908 galaxyEnaQ3Ay-5,137 galaxyEnaQ3Ay-5,462 galaxyEnaQ3Ay-5,863 galaxyEnaQ3Ay-5,908 galaxyEnaQ3Ay-9,137 galaxyEnaQ3Ay-9,462 galaxyEnaQ3Ay-9,863 galaxyEnaQ3Ay-9,908 galaxyEnaQ3B-1-1-7,137 galaxyEnaQ3B-1-1-7,462 galaxyEnaQ3B-1-1-7,863 galaxyEnaQ3B-1-1-7,908 galaxyEnaQ3B-1-617-2,137 galaxyEnaQ3B-1-617-2,462 galaxyEnaQ3B-1-617-2,863 galaxyEnaQ3B-1-617-2,908 mccoy,299 rappuoli,306 sarsCov2PhyloPub,825 spikeMuts,270 treangen,132 unipCov2AliSwissprot,482 unipCov2Chain,711 unipCov2DisulfBond,707 unipCov2Domain,706 unipCov2Interest,365 unipCov2LocCytopl,706 unipCov2LocExtra,706 unipCov2LocSignal,707 unipCov2LocTransMemb,707 unipCov2Modif,710 unipCov2Mut,707 unipCov2Other,707 unipCov2Repeat,705 unipCov2Struct,709 variantMuts,76 variantMuts,198 variantMuts,783 variantMuts,947 variantMuts,1052 variants abEscape,811 bloomEscMabAvg,815 bloomEscMax,821 bloomEscSerumAvg,816 bloomEscTop,819 escape,818 mccoy,811 rappuoli,818 spikeMuts,112 spikeMuts,279 spikeMuts,391 spikeMuts,408 unipCov2AliSwissprot,137 unipCov2AliSwissprot,498 unipCov2Chain,216 unipCov2Chain,343 unipCov2Chain,727 unipCov2DisulfBond,212 unipCov2DisulfBond,339 unipCov2DisulfBond,723 unipCov2Domain,211 unipCov2Domain,338 unipCov2Domain,722 unipCov2Interest,381 unipCov2LocCytopl,211 unipCov2LocCytopl,338 unipCov2LocCytopl,722 unipCov2LocExtra,211 unipCov2LocExtra,338 unipCov2LocExtra,722 unipCov2LocSignal,212 unipCov2LocSignal,339 unipCov2LocSignal,723 unipCov2LocTransMemb,212 unipCov2LocTransMemb,339 unipCov2LocTransMemb,723 unipCov2Modif,215 unipCov2Modif,342 unipCov2Modif,726 unipCov2Mut,212 unipCov2Mut,339 unipCov2Mut,723 unipCov2Other,212 unipCov2Other,339 unipCov2Other,723 unipCov2Repeat,210 unipCov2Repeat,337 unipCov2Repeat,721 unipCov2Struct,214 unipCov2Struct,341 unipCov2Struct,725 variantMuts,1 variantMuts,6 variantMuts,35 variantMuts,58 variantMuts,96 variantMuts,114 variantMuts,150 variantMuts,155 variantMuts,172 variantMuts,211 variantMuts,1019 variantMuts,1029 variantMuts,1058 variantMuts,1066 variantMuts,1074 variantMuts,1085 variation Negative_Selection,16 Positive_Selection,16 Q0_tracks,15 Q0_tracks,841 Q0_tracks,921 Q1_tracks,17 Q1_tracks,843 Q1_tracks,923 Q2_tracks,17 Q2_tracks,843 Q2_tracks,923 Q3_tracks,17 Q3_tracks,843 Q3_tracks,923 galaxyEna,17 galaxyEna,843 galaxyEna,923 galaxyEnaQ0Ba-1,13 galaxyEnaQ0Ba-1,839 galaxyEnaQ0Ba-1,919 galaxyEnaQ0Ba-1-1,13 galaxyEnaQ0Ba-1-1,839 galaxyEnaQ0Ba-1-1,919 galaxyEnaQ0Ba-1-1-11,13 galaxyEnaQ0Ba-1-1-11,839 galaxyEnaQ0Ba-1-1-11,919 galaxyEnaQ0Ba-1-17,13 galaxyEnaQ0Ba-1-17,839 galaxyEnaQ0Ba-1-17,919 galaxyEnaQ0Ba-2,13 galaxyEnaQ0Ba-2,839 galaxyEnaQ0Ba-2,919 galaxyEnaQ1Ay-4,13 galaxyEnaQ1Ay-4,839 galaxyEnaQ1Ay-4,919 galaxyEnaQ1Ay-4-2,13 galaxyEnaQ1Ay-4-2,839 galaxyEnaQ1Ay-4-2,919 galaxyEnaQ1Ay-4-2-2,13 galaxyEnaQ1Ay-4-2-2,839 galaxyEnaQ1Ay-4-2-2,919 galaxyEnaQ1Ay-43,13 galaxyEnaQ1Ay-43,839 galaxyEnaQ1Ay-43,919 galaxyEnaQ1Ba-1-17,13 galaxyEnaQ1Ba-1-17,839 galaxyEnaQ1Ba-1-17,919 galaxyEnaQ2Ay-120,13 galaxyEnaQ2Ay-120,839 galaxyEnaQ2Ay-120,919 galaxyEnaQ2Ay-122,13 galaxyEnaQ2Ay-122,839 galaxyEnaQ2Ay-122,919 galaxyEnaQ2Ay-4,13 galaxyEnaQ2Ay-4,839 galaxyEnaQ2Ay-4,919 galaxyEnaQ2Ay-5,13 galaxyEnaQ2Ay-5,839 galaxyEnaQ2Ay-5,919 galaxyEnaQ2Ay-6,13 galaxyEnaQ2Ay-6,839 galaxyEnaQ2Ay-6,919 galaxyEnaQ3Ay-4,13 galaxyEnaQ3Ay-4,839 galaxyEnaQ3Ay-4,919 galaxyEnaQ3Ay-5,13 galaxyEnaQ3Ay-5,839 galaxyEnaQ3Ay-5,919 galaxyEnaQ3Ay-9,13 galaxyEnaQ3Ay-9,839 galaxyEnaQ3Ay-9,919 galaxyEnaQ3B-1-1-7,13 galaxyEnaQ3B-1-1-7,839 galaxyEnaQ3B-1-1-7,919 galaxyEnaQ3B-1-617-2,13 galaxyEnaQ3B-1-617-2,839 galaxyEnaQ3B-1-617-2,919 microdel,6 multiz7way,992 nextstrainClade,11 nextstrainFreq,8 nextstrainFreq19A,8 nextstrainFreq19B,8 nextstrainFreq20A,8 nextstrainFreq20B,8 nextstrainFreq20C,8 nextstrainFreq20D,8 nextstrainFreq20F,8 nextstrainFreq20G,8 nextstrainFreq21A_Delta,10 nextstrainFreq21B_Kappa,10 nextstrainFreq21D_Eta,10 nextstrainFreq21E_Theta,10 nextstrainFreq21F_Iota,10 nextstrainFreq21G_Lambda,10 nextstrainFreq21H_Mu,10 nextstrainFreq21I_Delta,10 nextstrainFreq21J_Delta,10 nextstrainFreqAll,8 nextstrainFreqViewAll,8 nextstrainFreqViewNewClades,8 nextstrainParsimony,11 nextstrainSamples,11 nextstrainSamples19A,14 nextstrainSamples19B,14 nextstrainSamples20A,14 nextstrainSamples20B,14 nextstrainSamples20C,14 nextstrainSamples20D,14 nextstrainSamples20F,14 nextstrainSamples20G,14 nextstrainSamples21A_Delta,16 nextstrainSamples21B_Kappa,16 nextstrainSamples21D_Eta,16 nextstrainSamples21E_Theta,16 nextstrainSamples21F_Iota,16 nextstrainSamples21G_Lambda,16 nextstrainSamples21H_Mu,16 nextstrainSamples21I_Delta,16 nextstrainSamples21J_Delta,16 nextstrainSamplesAll,11 nextstrainSamplesRb,14 nextstrainSamplesViewAll,11 nextstrainSamplesViewNewClades,11 pond,13 potPathoIndel,15 rapid,145 recomb,10 resist,12 resistPred,20 sarsCov2Phylo,16 sarsCov2PhyloFull,16 sarsCov2PhyloMinAf001,18 sarsCov2PhyloMinAf01,18 sarsCov2PhyloPub,14 sarsCov2PhyloPubAllFull,16 sarsCov2PhyloPubAllMinAf001,15 sarsCov2PhyloPubAllMinAf01,15 simpleRepeat,8 spikeMuts,11 strainCons119way,2370 strainCons44way,1965 treangen,12 treangen,29 treangen,40 treangen,50 variantAaMutsV2_B_1_1_7,19 variantAaMutsV2_B_1_351,19 variantAaMutsV2_B_1_429,19 variantAaMutsV2_B_1_525,18 variantAaMutsV2_B_1_526,19 variantAaMutsV2_B_1_617_1,19 variantAaMutsV2_B_1_617_2,19 variantAaMutsV2_B_1_621,19 variantAaMutsV2_C_37,19 variantAaMutsV2_P_1,19 variantAaMuts_BA_2,16 variantAaMuts_BA_2_12_1,16 variantAaMuts_BA_2_75,17 variantAaMuts_BA_2_86,16 variantAaMuts_BA_4,17 variantAaMuts_BA_5,17 variantAaMuts_BQ_1,16 variantAaMuts_B_1_1_529,16 variantAaMuts_CH_1_1,16 variantAaMuts_EG_5_1,16 variantAaMuts_HK_3,16 variantAaMuts_JN_1,16 variantAaMuts_XBB,16 variantAaMuts_XBB_1_16,16 variantAaMuts_XBB_1_5,16 variantAaMuts_XBB_1_5_70,16 variantAaMuts_XBB_1_9,16 variantAaMuts_XBB_2_3,16 variantMuts,21 variantNucMutsV2_B_1_1_7,18 variantNucMutsV2_B_1_351,18 variantNucMutsV2_B_1_429,18 variantNucMutsV2_B_1_525,17 variantNucMutsV2_B_1_526,18 variantNucMutsV2_B_1_617_1,18 variantNucMutsV2_B_1_617_2,18 variantNucMutsV2_B_1_621,18 variantNucMutsV2_C_37,18 variantNucMutsV2_P_1,18 variantNucMuts_BA_2,16 variantNucMuts_BA_2_12_1,16 variantNucMuts_BA_2_75,16 variantNucMuts_BA_2_86,16 variantNucMuts_BA_4,17 variantNucMuts_BA_5,17 variantNucMuts_BQ_1,16 variantNucMuts_B_1_1_529,18 variantNucMuts_CH_1_1,16 variantNucMuts_EG_5_1,16 variantNucMuts_HK_3,16 variantNucMuts_JN_1,16 variantNucMuts_XBB,16 variantNucMuts_XBB_1_16,16 variantNucMuts_XBB_1_5,16 variantNucMuts_XBB_1_5_70,16 variantNucMuts_XBB_1_9,16 variantNucMuts_XBB_2_3,16 windowmaskerSdust,9 variations vaccines,454 variety gc5BaseBw,45 various PhyloCSF_smooth,296 PhyloCSFpower,311 crisprDet,93 iedb,18 problematicSites,102 problematicSites,401 treangen,43 varma microdel,283 varskip varskip,2 varskip,8 varskip,22 varskip1a,1 varskip1a,4 varskip2,1 varskip2,4 varskip2b,1 varskip2b,4 varskipVsl1a,1 varskipVsl1a,5 vb multiz7way,1215 strainCons119way,2593 strainCons44way,2188 vcf Q0_tracks,875 Q1_tracks,877 Q2_tracks,877 Q3_tracks,877 galaxyEna,877 galaxyEnaQ0Ba-1,873 galaxyEnaQ0Ba-1-1,873 galaxyEnaQ0Ba-1-1-11,873 galaxyEnaQ0Ba-1-17,873 galaxyEnaQ0Ba-2,873 galaxyEnaQ1Ay-4,873 galaxyEnaQ1Ay-4-2,873 galaxyEnaQ1Ay-4-2-2,873 galaxyEnaQ1Ay-43,873 galaxyEnaQ1Ba-1-17,873 galaxyEnaQ2Ay-120,873 galaxyEnaQ2Ay-122,873 galaxyEnaQ2Ay-4,873 galaxyEnaQ2Ay-5,873 galaxyEnaQ2Ay-6,873 galaxyEnaQ3Ay-4,873 galaxyEnaQ3Ay-5,873 galaxyEnaQ3Ay-9,873 galaxyEnaQ3B-1-1-7,873 galaxyEnaQ3B-1-617-2,873 nextstrainSamples,759 nextstrainSamples,852 sarsCov2Phylo,707 sarsCov2Phylo,735 sarsCov2Phylo,769 sarsCov2PhyloPub,828 sarsCov2PhyloPub,868 treangen,195 treangen,288 vcf.gz sarsCov2Phylo,713 vcfchrom nextstrainSamples,876 vcfs treangen,152 treangen,177 treangen,191 venter resist,57 resist,153 resistPred,245 verification microdel,107 vero Calu3_07hpi,98 Calu3_07hpi,253 ORFs,96 ORFs,251 Vero6_05hpi,98 Vero6_05hpi,253 Vero6_24hpi,98 Vero6_24hpi,253 weizmanOrfs,104 weizmanOrfs,259 vero6 CHX_24hr_1,1 CHX_24hr_1,5 CHX_24hr_2,1 CHX_24hr_2,5 CHX_5hr_1,1 CHX_5hr_1,5 CHX_5hr_2,1 CHX_5hr_2,5 Harr_24hr_1,1 Harr_24hr_1,5 Harr_24hr_2,1 Harr_24hr_2,5 Harr_5hr_1,1 Harr_5hr_1,5 Harr_5hr_2,1 Harr_5hr_2,5 LTM_24hr_1,1 LTM_24hr_1,5 LTM_24hr_2,1 LTM_24hr_2,5 LTM_5hr_1,1 LTM_5hr_1,5 LTM_5hr_2,1 LTM_5hr_2,5 Vero6_05hpi,1 Vero6_05hpi,3 Vero6_24hpi,1 Vero6_24hpi,3 mRNA-seq_24hr_1,1 mRNA-seq_24hr_1,5 mRNA-seq_24hr_2,1 mRNA-seq_24hr_2,5 mRNA-seq_5hr_1,1 mRNA-seq_5hr_1,5 mRNA-seq_5hr_2,1 mRNA-seq_5hr_2,5 veroe6 SHAPE,5 pyle,223 version artic,26 articV4,26 articV4_1,26 augustusGene,23 augustusGene,263 cpgIslandExt,170 cpgIslandExt,193 cpgIslandExt,199 cpgIslandExt,209 cpgIslandExtUnmasked,173 cpgIslandExtUnmasked,196 cpgIslandExtUnmasked,202 cpgIslandExtUnmasked,212 cpgIslandSuper,170 cpgIslandSuper,193 cpgIslandSuper,199 cpgIslandSuper,209 gordon2,178 gordon2,210 multiz7way,584 primers,42 sarsCov2Phylo,1030 sarsCov2PhyloPub,712 sarsCov2PhyloPub,858 sarsCov2PhyloPub,1150 strainCons119way,934 strainCons44way,882 treangen,188 variantMuts,1044 versions augustusGene,279 problematicSites,220 spikeMuts,326 vertebrate cpgIslandExt,59 cpgIslandExt,611 cpgIslandExtUnmasked,62 cpgIslandExtUnmasked,614 cpgIslandSuper,59 cpgIslandSuper,611 multiz7way,1062 strainCons119way,2 strainCons119way,11 strainCons119way,87 strainCons119way,2440 strainCons119wayViewalign,10 strainCons119wayViewphastcons,11 strainCons119wayViewphyloP,11 strainCons44way,2035 vertebrates augustusGene,209 cpgIslandExt,25 cpgIslandExtUnmasked,28 cpgIslandSuper,25 vertical nextstrainFreq,117 nextstrainSamples,111 nextstrainSamples,309 nextstrainSamples,369 nextstrainSamples,392 nextstrainSamples,428 nextstrainSamples,489 sarsCov2Phylo,314 sarsCov2Phylo,373 sarsCov2Phylo,396 sarsCov2Phylo,464 sarsCov2PhyloPub,321 sarsCov2PhyloPub,402 sarsCov2PhyloPub,425 sarsCov2PhyloPub,493 very kimRnaMod,48 nextstrainClade,116 problematicSites,239 sarsCov2Phylo,43 sarsCov2Phylo,656 sarsCov2Phylo,795 sarsCov2PhyloPub,57 sarsCov2PhyloPub,680 strainCons119way,68 strainCons119way,85 vex042 nextstrainFreq,428 nextstrainSamples,1048 via Starr_Bloom,166 Starr_Bloom_bind,160 abEscape,254 bloomEscMabAvg,258 bloomEscMax,264 bloomEscSerumAvg,259 bloomEscTop,262 escape,261 mccoy,254 nextstrainFreq,308 nextstrainSamples,975 publicAnnots,7 publicAnnots,19 rappuoli,261 sarsCov2Phylo,925 spikeMuts,71 strainCons119way,426 strainCons44way,374 vaccines,230 vic01 strainCons119way,1175 vidrl microdel,223 view cpgIslandExt,206 cpgIslandExtUnmasked,209 cpgIslandSuper,206 multiz7way,298 sarsCov2Phylo,156 sarsCov2PhyloPub,162 strainCons119way,641 strainCons44way,589 vaccines,160 viewed gold,79 nextstrainSamples,226 viewer contacts,74 contacts,187 viewing nextstrainClade,35 nextstrainFreq,35 nextstrainGene,33 nextstrainParsimony,52 nextstrainSamples,48 viewpoints vaccines,152 villapol treangen,310 violates recomb,103 viral Calu3_07hpi,202 Calu3_07hpi,281 ORFs,200 ORFs,279 Vero6_05hpi,202 Vero6_05hpi,281 Vero6_24hpi,202 Vero6_24hpi,281 abEscape,103 abEscape,844 addgene,192 bloomEscMabAvg,107 bloomEscMabAvg,848 bloomEscMax,113 bloomEscMax,854 bloomEscSerumAvg,108 bloomEscSerumAvg,849 bloomEscTop,111 bloomEscTop,852 cd8escape,31 cd8escape,93 contacts,11 epitopes,194 escape,110 escape,851 gordon2,68 gordon2,79 gordon2,87 gordon2,93 gordon2,191 kimTranscripts,293 kimTranscripts,302 kimTranscripts,316 mccoy,103 mccoy,844 rappuoli,110 rappuoli,851 resistPred,44 rfam,169 strainCons119way,81 swift,51 targets,141 transcriptome,134 variantMuts,72 variantMuts,1038 weizmanOrfs,208 weizmanOrfs,287 viridis pbmShanghai,251 pbmShanghai,389 virological variantMuts,1320 variantMuts,1361 virological.org problematicSites,556 problematicSites,583 sarsCov2Phylo,1067 sarsCov2Phylo,1094 sarsCov2PhyloPub,1187 sarsCov2PhyloPub,1214 virology phyloGenes,580 virulence variantMuts,105 variantMuts,129 virus Calu3_07hpi,261 ORFs,259 SHAPE,7 Vero6_05hpi,261 Vero6_24hpi,261 cd8escape,141 epitopes,160 epitopes,263 icshape,66 kimTranscripts,48 multiz7way,957 ncbiGeneBGP,22 ncbiProducts,25 nextstrainClade,71 nextstrainFreq,124 nextstrainFreq,422 nextstrainParsimony,38 nextstrainSamples,35 nextstrainSamples,1042 potPathoIndel,202 problematicSites,432 sarsCov2PhyloPub,32 sarsCov2PhyloPub,935 spikeMuts,22 strainCons119way,49 strainCons119way,130 strainCons119way,1313 strainCons119way,1378 strainCons119way,1433 strainCons119way,1475 strainCons119way,1482 strainCons119way,2335 strainCons44way,46 strainCons44way,78 strainCons44way,1930 strainPhastCons119way,3 strainPhastCons44way,5 strainPhyloP119way,3 strainPhyloP44way,5 transcriptome,40 variantMuts,782 weizmanOrfs,267 viruses cas13Crispr,203 cd8escape,28 phyloGenes,541 potPathoIndel,29 rnaStructRangan,120 spikeMuts,84 treangen,45 vaccines,581 visibility IgG_Z-score-_COVID-19_patients,239 IgM_Z-score-_COVID-19_patients,239 bpmIggCovidSum,248 bpmIgmCovidSum,248 cpgIslandExt,212 cpgIslandExtUnmasked,215 cpgIslandSuper,212 pbm,248 pbmShanghai,387 varskip,43 visible IgG_Z-score-_COVID-19_patients,115 IgM_Z-score-_COVID-19_patients,115 bpmIggCovidSum,124 bpmIgmCovidSum,124 cpgIslandExt,188 cpgIslandExtUnmasked,191 cpgIslandSuper,188 nextstrainSamples,435 pbm,124 pbmShanghai,181 sarsCov2Phylo,63 sarsCov2Phylo,471 sarsCov2PhyloPub,77 sarsCov2PhyloPub,500 visit resistPred,87 variantMuts,1023 visualization multiz7way,788 pyle,130 strainCons119way,1660 strainCons44way,1255 visualizations Starr_Bloom,157 Starr_Bloom_bind,151 abEscape,248 bloomEscMabAvg,252 bloomEscMax,258 bloomEscSerumAvg,253 bloomEscTop,256 escape,255 mccoy,248 rappuoli,255 vita iedb,97 vitro abEscape,889 bloomEscMabAvg,893 bloomEscMax,899 bloomEscSerumAvg,894 bloomEscTop,897 escape,896 icshape,23 mccoy,889 rappuoli,896 vivo Entropy,9 icshape,20 icshape,209 pyle,169 vlkov rapid,340 vmc strainCons119way,1322 vn kimIvtCov,182 kimTranscripts,469 transcriptome,475 voc variantAaMutsV2_B_1_1_7,5 variantAaMutsV2_B_1_351,5 variantAaMutsV2_B_1_617_2,5 variantAaMutsV2_P_1,5 variantMuts,9 variantMuts,99 variantMuts,261 variantMuts,279 variantMuts,297 variantMuts,314 variantMuts,330 variantMuts,348 variantMuts,364 variantMuts,421 variantNucMutsV2_B_1_1_7,5 variantNucMutsV2_B_1_351,5 variantNucMutsV2_B_1_617_2,5 variantNucMutsV2_P_1,5 variantNucMuts_BA_2,6 variantNucMuts_BA_2_12_1,6 variantNucMuts_BA_2_75,6 variantNucMuts_BA_2_86,6 variantNucMuts_BA_4,6 variantNucMuts_BA_5,6 variantNucMuts_BQ_1,6 variantNucMuts_B_1_1_529,6 variantNucMuts_CH_1_1,6 variantNucMuts_EG_5_1,6 variantNucMuts_HK_3,6 variantNucMuts_JN_1,6 variantNucMuts_XBB,6 variantNucMuts_XBB_1_16,6 variantNucMuts_XBB_1_5,6 variantNucMuts_XBB_1_5_70,6 variantNucMuts_XBB_1_9,6 variantNucMuts_XBB_2_3,6 voi variantAaMutsV2_B_1_621,5 variantAaMutsV2_C_37,5 variantMuts,11 variantMuts,117 variantMuts,468 variantMuts,469 variantMuts,489 variantMuts,490 variantMuts,560 variantMuts,608 variantMuts,621 variantMuts,637 variantMuts,652 variantMuts,1068 variantNucMutsV2_B_1_621,5 variantNucMutsV2_C_37,5 voitype variantMuts,262 vol vaccines,609 voloch variantMuts,1412 volz variantMuts,1297 variantMuts,1324 von nextstrainSamples,1057 vr-759 multiz7way,715 strainCons119way,1358 vs Q0_tracks,1225 Q1_tracks,1227 Q2_tracks,1227 Q3_tracks,1227 galaxyEna,1227 galaxyEnaQ0Ba-1,1223 galaxyEnaQ0Ba-1-1,1223 galaxyEnaQ0Ba-1-1-11,1223 galaxyEnaQ0Ba-1-17,1223 galaxyEnaQ0Ba-2,1223 galaxyEnaQ1Ay-4,1223 galaxyEnaQ1Ay-4-2,1223 galaxyEnaQ1Ay-4-2-2,1223 galaxyEnaQ1Ay-43,1223 galaxyEnaQ1Ba-1-17,1223 galaxyEnaQ2Ay-120,1223 galaxyEnaQ2Ay-122,1223 galaxyEnaQ2Ay-4,1223 galaxyEnaQ2Ay-5,1223 galaxyEnaQ2Ay-6,1223 galaxyEnaQ3Ay-4,1223 galaxyEnaQ3Ay-5,1223 galaxyEnaQ3Ay-9,1223 galaxyEnaQ3B-1-1-7,1223 galaxyEnaQ3B-1-617-2,1223 vulnerable icshape,223 vum variantAaMutsV2_B_1_429,5 variantAaMutsV2_B_1_525,5 variantAaMutsV2_B_1_526,5 variantAaMutsV2_B_1_617_1,5 variantMuts,15 variantMuts,153 variantMuts,378 variantMuts,392 variantMuts,406 variantMuts,435 variantMuts,448 variantMuts,466 variantMuts,487 variantMuts,509 variantMuts,523 variantMuts,541 variantMuts,668 variantMuts,683 variantMuts,699 variantMuts,715 variantNucMutsV2_B_1_429,5 variantNucMutsV2_B_1_525,5 variantNucMutsV2_B_1_526,5 variantNucMutsV2_B_1_617_1,5 vums variantMuts,166 w Q0_tracks,1262 Q0_tracks,1298 Q1_tracks,1264 Q1_tracks,1300 Q2_tracks,1264 Q2_tracks,1300 Q3_tracks,1264 Q3_tracks,1300 abEscape,777 bloomEscMabAvg,781 bloomEscMax,787 bloomEscSerumAvg,782 bloomEscTop,785 escape,784 galaxyEna,1264 galaxyEna,1300 galaxyEnaQ0Ba-1,1260 galaxyEnaQ0Ba-1,1296 galaxyEnaQ0Ba-1-1,1260 galaxyEnaQ0Ba-1-1,1296 galaxyEnaQ0Ba-1-1-11,1260 galaxyEnaQ0Ba-1-1-11,1296 galaxyEnaQ0Ba-1-17,1260 galaxyEnaQ0Ba-1-17,1296 galaxyEnaQ0Ba-2,1260 galaxyEnaQ0Ba-2,1296 galaxyEnaQ1Ay-4,1260 galaxyEnaQ1Ay-4,1296 galaxyEnaQ1Ay-4-2,1260 galaxyEnaQ1Ay-4-2,1296 galaxyEnaQ1Ay-4-2-2,1260 galaxyEnaQ1Ay-4-2-2,1296 galaxyEnaQ1Ay-43,1260 galaxyEnaQ1Ay-43,1296 galaxyEnaQ1Ba-1-17,1260 galaxyEnaQ1Ba-1-17,1296 galaxyEnaQ2Ay-120,1260 galaxyEnaQ2Ay-120,1296 galaxyEnaQ2Ay-122,1260 galaxyEnaQ2Ay-122,1296 galaxyEnaQ2Ay-4,1260 galaxyEnaQ2Ay-4,1296 galaxyEnaQ2Ay-5,1260 galaxyEnaQ2Ay-5,1296 galaxyEnaQ2Ay-6,1260 galaxyEnaQ2Ay-6,1296 galaxyEnaQ3Ay-4,1260 galaxyEnaQ3Ay-4,1296 galaxyEnaQ3Ay-5,1260 galaxyEnaQ3Ay-5,1296 galaxyEnaQ3Ay-9,1260 galaxyEnaQ3Ay-9,1296 galaxyEnaQ3B-1-1-7,1260 galaxyEnaQ3B-1-1-7,1296 galaxyEnaQ3B-1-617-2,1260 galaxyEnaQ3B-1-617-2,1296 mccoy,777 multiz7way,632 multiz7way,1133 multiz7way,1217 multiz7way,1260 phyloGenes,552 pond,257 rappuoli,784 strainCons119way,982 strainCons119way,2511 strainCons119way,2595 strainCons119way,2638 strainCons44way,930 strainCons44way,2106 strainCons44way,2190 strainCons44way,2233 variantMuts,1286 w-l problematicSites,114 problematicSites,453 problematicSites,494 w_bind_avg W_bind_avg,1 w_expr_avg W_expr_avg_Expression,1 wa2 strainCons119way,1206 waack augustusGene,318 walker problematicSites,405 problematicSites,541 problematicSites,567 sarsCov2Phylo,1052 sarsCov2Phylo,1078 sarsCov2PhyloPub,1172 sarsCov2PhyloPub,1198 wall microdel,292 walls Starr_Bloom,256 Starr_Bloom_bind,250 wan pyle,66 pyle,280 wang IgG_Z-score-_COVID-19_patients,403 IgG_Z-score-_COVID-19_patients,413 IgM_Z-score-_COVID-19_patients,403 IgM_Z-score-_COVID-19_patients,413 bpmIggCovidSum,11 bpmIggCovidSum,412 bpmIggCovidSum,422 bpmIgmCovidSum,11 bpmIgmCovidSum,412 bpmIgmCovidSum,422 icshape,204 pbm,12 pbm,412 pbm,422 treangen,302 was Calu3_07hpi,168 Calu3_07hpi,198 Calu3_07hpi,207 IgG_Z-score-_COVID-19_patients,244 IgM_Z-score-_COVID-19_patients,244 ORFs,166 ORFs,196 ORFs,205 PhyloCSF_smooth,382 PhyloCSFpower,399 Q0_tracks,620 Q0_tracks,1141 Q1_tracks,622 Q1_tracks,1143 Q2_tracks,622 Q2_tracks,1143 Q3_tracks,622 Q3_tracks,1143 Starr_Bloom,176 Starr_Bloom_bind,170 Vero6_05hpi,168 Vero6_05hpi,198 Vero6_05hpi,207 Vero6_24hpi,168 Vero6_24hpi,198 Vero6_24hpi,207 abEscape,396 abEscape,571 abEscape,591 abEscape,602 abEscape,629 addgene,174 addgene,187 addgene,197 addgene,230 augustusGene,230 augustusGene,245 augustusGene,264 augustusGene,280 bloomEscMabAvg,400 bloomEscMabAvg,575 bloomEscMabAvg,595 bloomEscMabAvg,606 bloomEscMabAvg,633 bloomEscMax,406 bloomEscMax,581 bloomEscMax,601 bloomEscMax,612 bloomEscMax,639 bloomEscSerumAvg,401 bloomEscSerumAvg,576 bloomEscSerumAvg,596 bloomEscSerumAvg,607 bloomEscSerumAvg,634 bloomEscTop,404 bloomEscTop,579 bloomEscTop,599 bloomEscTop,610 bloomEscTop,637 bpmIggCovidSum,253 bpmIgmCovidSum,253 cd8escape,138 cpgIslandExt,255 cpgIslandExt,307 cpgIslandExt,587 cpgIslandExtUnmasked,258 cpgIslandExtUnmasked,310 cpgIslandExtUnmasked,590 cpgIslandSuper,255 cpgIslandSuper,307 cpgIslandSuper,587 epitopes,94 escape,403 escape,578 escape,598 escape,609 escape,636 galaxyEna,622 galaxyEna,1143 galaxyEnaQ0Ba-1,618 galaxyEnaQ0Ba-1,1139 galaxyEnaQ0Ba-1-1,618 galaxyEnaQ0Ba-1-1,1139 galaxyEnaQ0Ba-1-1-11,618 galaxyEnaQ0Ba-1-1-11,1139 galaxyEnaQ0Ba-1-17,618 galaxyEnaQ0Ba-1-17,1139 galaxyEnaQ0Ba-2,618 galaxyEnaQ0Ba-2,1139 galaxyEnaQ1Ay-4,618 galaxyEnaQ1Ay-4,1139 galaxyEnaQ1Ay-4-2,618 galaxyEnaQ1Ay-4-2,1139 galaxyEnaQ1Ay-4-2-2,618 galaxyEnaQ1Ay-4-2-2,1139 galaxyEnaQ1Ay-43,618 galaxyEnaQ1Ay-43,1139 galaxyEnaQ1Ba-1-17,618 galaxyEnaQ1Ba-1-17,1139 galaxyEnaQ2Ay-120,618 galaxyEnaQ2Ay-120,1139 galaxyEnaQ2Ay-122,618 galaxyEnaQ2Ay-122,1139 galaxyEnaQ2Ay-4,618 galaxyEnaQ2Ay-4,1139 galaxyEnaQ2Ay-5,618 galaxyEnaQ2Ay-5,1139 galaxyEnaQ2Ay-6,618 galaxyEnaQ2Ay-6,1139 galaxyEnaQ3Ay-4,618 galaxyEnaQ3Ay-4,1139 galaxyEnaQ3Ay-5,618 galaxyEnaQ3Ay-5,1139 galaxyEnaQ3Ay-9,618 galaxyEnaQ3Ay-9,1139 galaxyEnaQ3B-1-1-7,618 galaxyEnaQ3B-1-1-7,1139 galaxyEnaQ3B-1-617-2,618 galaxyEnaQ3B-1-617-2,1139 gordon2,183 gordon2,220 gordon2,238 iedb,72 kimTranscripts,241 kimTranscripts,310 mccoy,396 mccoy,571 mccoy,591 mccoy,602 mccoy,629 multiz7way,728 multiz7way,743 multiz7way,816 ncbiGeneBGP,166 ncbiProducts,182 pbm,253 pbmShanghai,204 pbmShanghai,240 pbmShanghai,254 pbmShanghai,392 phyloGenes,452 phyloGenes,458 pond,203 primers,360 problematicSites,488 pyle,126 pyle,163 pyle,206 pyle,243 rappuoli,403 rappuoli,578 rappuoli,598 rappuoli,609 rappuoli,636 resistPred,71 rfam,12 rfam,59 rfam,149 rnaStructRangan,82 sarsCov2PhyloPub,937 simpleRepeat,68 spikeMuts,260 spikeMuts,286 strainCons119way,1488 strainCons119way,1503 strainCons119way,1714 strainCons119way,1763 strainCons119way,1869 strainCons119way,1925 strainCons119way,2006 strainCons119way,2034 strainCons119way,2194 strainCons44way,1158 strainCons44way,1173 strainCons44way,1309 strainCons44way,1358 strainCons44way,1464 strainCons44way,1520 strainCons44way,1601 strainCons44way,1629 strainCons44way,1789 targets,158 targets,182 targets,186 transcriptome,249 transcriptome,264 treangen,160 treangen,222 treangen,231 treangen,250 treangen,252 treangen,260 ucscToINSDC,48 ucscToRefSeq,42 unipCov2AliSwissprot,45 unipCov2AliSwissprot,403 unipCov2Chain,633 unipCov2DisulfBond,629 unipCov2Domain,628 unipCov2Interest,286 unipCov2LocCytopl,628 unipCov2LocExtra,628 unipCov2LocSignal,629 unipCov2LocTransMemb,629 unipCov2Modif,632 unipCov2Mut,629 unipCov2Other,629 unipCov2Repeat,627 unipCov2Struct,631 vaccines,105 vaccines,228 vaccines,639 variantMuts,905 variantMuts,968 variantMuts,1110 weizmanOrfs,174 weizmanOrfs,204 weizmanOrfs,213 windowmaskerSdust,52 windowmaskerSdust,78 washington microdel,281 waterhouse PhyloCSFpower,720 way strainCons119way,1817 strainCons44way,1412 ways gc5BaseBw,47 transcriptome,195 wd1127 strainCons119way,1426 we Calu3_07hpi,89 Calu3_07hpi,119 ORFs,87 ORFs,117 Q0_tracks,1208 Q1_tracks,1210 Q2_tracks,1210 Q3_tracks,1210 Vero6_05hpi,89 Vero6_05hpi,119 Vero6_24hpi,89 Vero6_24hpi,119 abEscape,236 bloomEscMabAvg,240 bloomEscMax,246 bloomEscSerumAvg,241 bloomEscTop,244 cas13Crispr,253 cas13Crispr,307 cas13Crispr,321 epitopes,140 epitopes,212 epitopes,250 escape,243 galaxyEna,1210 galaxyEnaQ0Ba-1,1206 galaxyEnaQ0Ba-1-1,1206 galaxyEnaQ0Ba-1-1-11,1206 galaxyEnaQ0Ba-1-17,1206 galaxyEnaQ0Ba-2,1206 galaxyEnaQ1Ay-4,1206 galaxyEnaQ1Ay-4-2,1206 galaxyEnaQ1Ay-4-2-2,1206 galaxyEnaQ1Ay-43,1206 galaxyEnaQ1Ba-1-17,1206 galaxyEnaQ2Ay-120,1206 galaxyEnaQ2Ay-122,1206 galaxyEnaQ2Ay-4,1206 galaxyEnaQ2Ay-5,1206 galaxyEnaQ2Ay-6,1206 galaxyEnaQ3Ay-4,1206 galaxyEnaQ3Ay-5,1206 galaxyEnaQ3Ay-9,1206 galaxyEnaQ3B-1-1-7,1206 galaxyEnaQ3B-1-617-2,1206 kimTranscripts,92 mccoy,236 microdel,73 microdel,83 microdel,101 microdel,108 microdel,188 microdel,217 nextstrainGene,61 nextstrainParsimony,425 nextstrainSamples,84 nextstrainSamples,751 nextstrainSamples,902 potPathoIndel,100 potPathoIndel,149 potPathoIndel,189 publicAnnots,43 rappuoli,243 recomb,84 recomb,253 rfam,132 rosettaMhc,50 rosettaMhc,83 rosettaMhc,108 sarsCov2Phylo,838 sarsCov2PhyloPub,755 sarsCov2PhyloPub,774 sarsCov2PhyloPub,921 transcriptome,84 transcriptome,282 treangen,181 variantMuts,1184 variantMuts,1189 variantMuts,1206 weizmanOrfs,95 weizmanOrfs,125 weak epitopes,56 rosettaMhc,275 weaknesses strainCons119way,251 strainCons44way,199 weaver Q0_tracks,1267 Q1_tracks,1269 Q2_tracks,1269 Q3_tracks,1269 galaxyEna,1269 galaxyEnaQ0Ba-1,1265 galaxyEnaQ0Ba-1-1,1265 galaxyEnaQ0Ba-1-1-11,1265 galaxyEnaQ0Ba-1-17,1265 galaxyEnaQ0Ba-2,1265 galaxyEnaQ1Ay-4,1265 galaxyEnaQ1Ay-4-2,1265 galaxyEnaQ1Ay-4-2-2,1265 galaxyEnaQ1Ay-43,1265 galaxyEnaQ1Ba-1-17,1265 galaxyEnaQ2Ay-120,1265 galaxyEnaQ2Ay-122,1265 galaxyEnaQ2Ay-4,1265 galaxyEnaQ2Ay-5,1265 galaxyEnaQ2Ay-6,1265 galaxyEnaQ3Ay-4,1265 galaxyEnaQ3Ay-5,1265 galaxyEnaQ3Ay-9,1265 galaxyEnaQ3B-1-1-7,1265 galaxyEnaQ3B-1-617-2,1265 pond,264 web Q0_tracks,261 Q1_tracks,263 Q2_tracks,263 Q3_tracks,263 galaxyEna,263 galaxyEnaQ0Ba-1,259 galaxyEnaQ0Ba-1-1,259 galaxyEnaQ0Ba-1-1-11,259 galaxyEnaQ0Ba-1-17,259 galaxyEnaQ0Ba-2,259 galaxyEnaQ1Ay-4,259 galaxyEnaQ1Ay-4-2,259 galaxyEnaQ1Ay-4-2-2,259 galaxyEnaQ1Ay-43,259 galaxyEnaQ1Ba-1-17,259 galaxyEnaQ2Ay-120,259 galaxyEnaQ2Ay-122,259 galaxyEnaQ2Ay-4,259 galaxyEnaQ2Ay-5,259 galaxyEnaQ2Ay-6,259 galaxyEnaQ3Ay-4,259 galaxyEnaQ3Ay-5,259 galaxyEnaQ3Ay-9,259 galaxyEnaQ3B-1-1-7,259 galaxyEnaQ3B-1-617-2,259 variantMuts,89 variantMuts,1204 webb multiz7way,837 strainCons119way,2215 strainCons44way,1810 webpage addgene,72 addgene,144 addgene,259 website crisprDet,111 crisprDet,135 pdb,108 primers,118 resist,44 resistPred,271 weekly Q0_tracks,996 Q1_tracks,998 Q2_tracks,998 Q3_tracks,998 galaxyEna,998 galaxyEnaQ0Ba-1,994 galaxyEnaQ0Ba-1-1,994 galaxyEnaQ0Ba-1-1-11,994 galaxyEnaQ0Ba-1-17,994 galaxyEnaQ0Ba-2,994 galaxyEnaQ1Ay-4,994 galaxyEnaQ1Ay-4-2,994 galaxyEnaQ1Ay-4-2-2,994 galaxyEnaQ1Ay-43,994 galaxyEnaQ1Ba-1-17,994 galaxyEnaQ2Ay-120,994 galaxyEnaQ2Ay-122,994 galaxyEnaQ2Ay-4,994 galaxyEnaQ2Ay-5,994 galaxyEnaQ2Ay-6,994 galaxyEnaQ3Ay-4,994 galaxyEnaQ3Ay-5,994 galaxyEnaQ3Ay-9,994 galaxyEnaQ3B-1-1-7,994 galaxyEnaQ3B-1-617-2,994 weilguny problematicSites,545 sarsCov2Phylo,1056 sarsCov2PhyloPub,1176 weingarten-gabbay Calu3_07hpi,352 ORFs,350 Vero6_05hpi,352 Vero6_24hpi,352 weizmanOrfs,358 weissig pdb,143 weizman Calu3_07hpi,14 ORFs,3 ORFs,12 Vero6_05hpi,14 Vero6_24hpi,14 weizmanOrfs,1 weizmanOrfs,12 weizmanOrfs,20 well augustusGene,78 cas13Crispr,271 cpgIslandExt,549 cpgIslandExtUnmasked,552 cpgIslandSuper,549 crisprDet,152 genscan,36 gordon2,160 pyle,47 rnaStructRangan,29 sarsCov2Phylo,630 sarsCov2PhyloPub,654 spikeMuts,52 spikeMuts,220 strainCons119way,317 strainCons44way,265 targets,95 well-determined pyle,183 well-known kimIvtCov,108 went publicAnnots,38 wenze icshape,189 were Calu3_07hpi,285 IgG_Z-score-_COVID-19_patients,44 IgG_Z-score-_COVID-19_patients,61 IgG_Z-score-_COVID-19_patients,85 IgG_Z-score-_COVID-19_patients,207 IgG_Z-score-_COVID-19_patients,257 IgM_Z-score-_COVID-19_patients,44 IgM_Z-score-_COVID-19_patients,61 IgM_Z-score-_COVID-19_patients,85 IgM_Z-score-_COVID-19_patients,207 IgM_Z-score-_COVID-19_patients,257 ORFs,283 PhyloCSF_smooth,365 PhyloCSF_smooth,431 PhyloCSFpower,380 PhyloCSFpower,446 Starr_Bloom,194 Starr_Bloom_bind,188 Vero6_05hpi,285 Vero6_24hpi,285 abEscape,39 abEscape,54 abEscape,146 abEscape,179 abEscape,643 addgene,151 addgene,156 addgene,209 addgene,214 addgene,226 artic,51 articV4,54 articV4_1,65 augustusGene,50 augustusGene,66 augustusGene,125 augustusGene,149 augustusGene,182 bloomEscMabAvg,43 bloomEscMabAvg,58 bloomEscMabAvg,150 bloomEscMabAvg,183 bloomEscMabAvg,647 bloomEscMax,49 bloomEscMax,64 bloomEscMax,156 bloomEscMax,189 bloomEscMax,653 bloomEscSerumAvg,44 bloomEscSerumAvg,59 bloomEscSerumAvg,151 bloomEscSerumAvg,184 bloomEscSerumAvg,648 bloomEscTop,47 bloomEscTop,62 bloomEscTop,154 bloomEscTop,187 bloomEscTop,651 bpmIggCovidSum,53 bpmIggCovidSum,70 bpmIggCovidSum,94 bpmIggCovidSum,216 bpmIggCovidSum,266 bpmIgmCovidSum,53 bpmIgmCovidSum,70 bpmIgmCovidSum,94 bpmIgmCovidSum,216 bpmIgmCovidSum,266 cas13Crispr,49 cas13Crispr,89 cas13Crispr,222 cas13Crispr,233 cas13Crispr,280 cd8escape,102 cd8escape,152 cd8escape,168 contacts,98 contacts,106 contacts,116 contacts,131 contacts,153 cpgIslandExt,227 cpgIslandExtUnmasked,230 cpgIslandSuper,227 crisprDet,43 crisprDet,138 escape,46 escape,61 escape,153 escape,186 escape,650 gc5BaseBw,79 gordon2,205 icshape,29 iedb,51 kimIvtCov,99 kimIvtCov,168 kimRnaMod,103 kimTranscripts,218 mccoy,39 mccoy,54 mccoy,146 mccoy,179 mccoy,643 microdel,64 multiz7way,42 multiz7way,577 multiz7way,639 multiz7way,677 multiz7way,784 nextstrainParsimony,284 pbm,53 pbm,70 pbm,94 pbm,216 pbm,266 pbmShanghai,53 pbmShanghai,87 pbmShanghai,99 pbmShanghai,151 pbmShanghai,359 pdb,103 pdb,130 phyloGenes,46 phyloGenes,465 pond,214 potPathoIndel,182 primers,30 primers,96 primers,239 primers,283 problematicSites,420 pyle,225 rapid,122 rapid,192 rappuoli,46 rappuoli,61 rappuoli,153 rappuoli,186 rappuoli,650 resist,36 rfam,42 rfam,92 rfam,108 rosettaMhc,372 strainCons119way,135 strainCons119way,927 strainCons119way,988 strainCons119way,1026 strainCons119way,1656 strainCons119way,1746 strainCons119way,1773 strainCons119way,1972 strainCons119way,2039 strainCons119way,2060 strainCons119way,2069 strainCons44way,83 strainCons44way,875 strainCons44way,936 strainCons44way,974 strainCons44way,1251 strainCons44way,1341 strainCons44way,1368 strainCons44way,1567 strainCons44way,1634 strainCons44way,1655 strainCons44way,1664 swift,62 swift,132 targets,203 targets,214 treangen,66 treangen,197 treangen,215 ucscToINSDC,35 ucscToRefSeq,29 unipCov2AliSwissprot,153 unipCov2AliSwissprot,184 unipCov2AliSwissprot,193 unipCov2AliSwissprot,224 unipCov2Chain,406 unipCov2Chain,437 unipCov2Chain,446 unipCov2DisulfBond,402 unipCov2DisulfBond,433 unipCov2DisulfBond,442 unipCov2Domain,401 unipCov2Domain,432 unipCov2Domain,441 unipCov2Interest,82 unipCov2Interest,113 unipCov2Interest,122 unipCov2LocCytopl,401 unipCov2LocCytopl,432 unipCov2LocCytopl,441 unipCov2LocExtra,401 unipCov2LocExtra,432 unipCov2LocExtra,441 unipCov2LocSignal,402 unipCov2LocSignal,433 unipCov2LocSignal,442 unipCov2LocTransMemb,402 unipCov2LocTransMemb,433 unipCov2LocTransMemb,442 unipCov2Modif,405 unipCov2Modif,436 unipCov2Modif,445 unipCov2Mut,402 unipCov2Mut,433 unipCov2Mut,442 unipCov2Other,402 unipCov2Other,433 unipCov2Other,442 unipCov2Repeat,400 unipCov2Repeat,431 unipCov2Repeat,440 unipCov2Struct,404 unipCov2Struct,435 unipCov2Struct,444 vaccines,191 variantMuts,69 variantMuts,168 variantMuts,794 variantMuts,817 variantMuts,832 variantMuts,849 variantMuts,890 variantMuts,936 variantMuts,941 variantMuts,958 variantMuts,1127 variantMuts,1146 variantMuts,1158 variantMuts,1226 varskip,59 weizmanOrfs,291 westbrook pdb,135 wh primers,140 wh-01 strainCons119way,1143 wh-02 strainCons119way,1277 wh-03 strainCons119way,1059 wh-04 strainCons119way,1250 wh-09 strainCons119way,1103 wh04 sarsCov2Phylo,673 sarsCov2PhyloPub,697 wh19002 strainCons119way,1281 wh19004 strainCons119way,1118 wh19005 strainCons119way,1091 wh19008 strainCons119way,1083 whale strainCons119way,1304 whelan abEscape,9 abEscape,154 abEscape,499 abEscape,806 bloomEscMabAvg,158 bloomEscMabAvg,503 bloomEscMabAvg,810 bloomEscMax,164 bloomEscMax,509 bloomEscMax,816 bloomEscSerumAvg,159 bloomEscSerumAvg,504 bloomEscSerumAvg,811 bloomEscTop,162 bloomEscTop,507 bloomEscTop,814 escape,1 escape,4 escape,161 escape,506 escape,813 mccoy,154 mccoy,499 mccoy,806 rappuoli,161 rappuoli,506 rappuoli,813 when PhyloCSF_smooth,167 PhyloCSFpower,182 augustusGene,188 augustusGene,238 multiz7way,161 multiz7way,178 multiz7way,200 multiz7way,222 multiz7way,235 multiz7way,325 nextstrainParsimony,172 nextstrainParsimony,217 nextstrainParsimony,235 nextstrainSamples,360 nextstrainSamples,436 nextstrainSamples,487 nextstrainSamples,699 pbmShanghai,65 recomb,166 sarsCov2Phylo,202 sarsCov2Phylo,230 sarsCov2Phylo,364 sarsCov2Phylo,472 sarsCov2PhyloPub,209 sarsCov2PhyloPub,237 sarsCov2PhyloPub,393 sarsCov2PhyloPub,501 strainCons119way,510 strainCons119way,527 strainCons119way,549 strainCons119way,571 strainCons119way,584 strainCons119way,668 strainCons119way,2179 strainCons44way,458 strainCons44way,475 strainCons44way,497 strainCons44way,519 strainCons44way,532 strainCons44way,616 strainCons44way,1774 treangen,53 treangen,247 variantMuts,815 where abEscape,477 bloomEscMabAvg,481 bloomEscMax,487 bloomEscSerumAvg,482 bloomEscTop,20 bloomEscTop,485 cpgIslandExt,151 cpgIslandExt,393 cpgIslandExtUnmasked,154 cpgIslandExtUnmasked,396 cpgIslandSuper,151 cpgIslandSuper,393 escape,484 gold,94 iedb,86 kimIvtCov,133 mccoy,477 multiz7way,520 nextstrainFreq,349 nextstrainSamples,316 pbmShanghai,334 problematicSites,5 problematicSitesCaution,4 problematicSitesMask,4 rappuoli,484 sarsCov2Phylo,321 sarsCov2PhyloPub,328 sarsCov2PhyloPub,930 sarsCov2PhyloPub,944 strainCons119way,870 strainCons44way,818 vaccines,134 whether treangen,264 which PhyloCSF_smooth,147 PhyloCSF_smooth,342 PhyloCSFpower,162 PhyloCSFpower,357 Q0_tracks,445 Q0_tracks,591 Q0_tracks,601 Q0_tracks,617 Q0_tracks,687 Q0_tracks,854 Q0_tracks,893 Q0_tracks,964 Q1_tracks,447 Q1_tracks,593 Q1_tracks,603 Q1_tracks,619 Q1_tracks,689 Q1_tracks,856 Q1_tracks,895 Q1_tracks,966 Q2_tracks,447 Q2_tracks,593 Q2_tracks,603 Q2_tracks,619 Q2_tracks,689 Q2_tracks,856 Q2_tracks,895 Q2_tracks,966 Q3_tracks,447 Q3_tracks,593 Q3_tracks,603 Q3_tracks,619 Q3_tracks,689 Q3_tracks,856 Q3_tracks,895 Q3_tracks,966 abEscape,291 articV4_1,31 augustusGene,159 augustusGene,227 bloomEscMabAvg,295 bloomEscMax,301 bloomEscSerumAvg,296 bloomEscTop,299 cpgIslandExt,85 cpgIslandExtUnmasked,88 cpgIslandSuper,85 epitopes,233 escape,298 galaxyEna,447 galaxyEna,593 galaxyEna,603 galaxyEna,619 galaxyEna,689 galaxyEna,856 galaxyEna,895 galaxyEna,966 galaxyEnaQ0Ba-1,443 galaxyEnaQ0Ba-1,589 galaxyEnaQ0Ba-1,599 galaxyEnaQ0Ba-1,615 galaxyEnaQ0Ba-1,685 galaxyEnaQ0Ba-1,852 galaxyEnaQ0Ba-1,891 galaxyEnaQ0Ba-1,962 galaxyEnaQ0Ba-1-1,443 galaxyEnaQ0Ba-1-1,589 galaxyEnaQ0Ba-1-1,599 galaxyEnaQ0Ba-1-1,615 galaxyEnaQ0Ba-1-1,685 galaxyEnaQ0Ba-1-1,852 galaxyEnaQ0Ba-1-1,891 galaxyEnaQ0Ba-1-1,962 galaxyEnaQ0Ba-1-1-11,443 galaxyEnaQ0Ba-1-1-11,589 galaxyEnaQ0Ba-1-1-11,599 galaxyEnaQ0Ba-1-1-11,615 galaxyEnaQ0Ba-1-1-11,685 galaxyEnaQ0Ba-1-1-11,852 galaxyEnaQ0Ba-1-1-11,891 galaxyEnaQ0Ba-1-1-11,962 galaxyEnaQ0Ba-1-17,443 galaxyEnaQ0Ba-1-17,589 galaxyEnaQ0Ba-1-17,599 galaxyEnaQ0Ba-1-17,615 galaxyEnaQ0Ba-1-17,685 galaxyEnaQ0Ba-1-17,852 galaxyEnaQ0Ba-1-17,891 galaxyEnaQ0Ba-1-17,962 galaxyEnaQ0Ba-2,443 galaxyEnaQ0Ba-2,589 galaxyEnaQ0Ba-2,599 galaxyEnaQ0Ba-2,615 galaxyEnaQ0Ba-2,685 galaxyEnaQ0Ba-2,852 galaxyEnaQ0Ba-2,891 galaxyEnaQ0Ba-2,962 galaxyEnaQ1Ay-4,443 galaxyEnaQ1Ay-4,589 galaxyEnaQ1Ay-4,599 galaxyEnaQ1Ay-4,615 galaxyEnaQ1Ay-4,685 galaxyEnaQ1Ay-4,852 galaxyEnaQ1Ay-4,891 galaxyEnaQ1Ay-4,962 galaxyEnaQ1Ay-4-2,443 galaxyEnaQ1Ay-4-2,589 galaxyEnaQ1Ay-4-2,599 galaxyEnaQ1Ay-4-2,615 galaxyEnaQ1Ay-4-2,685 galaxyEnaQ1Ay-4-2,852 galaxyEnaQ1Ay-4-2,891 galaxyEnaQ1Ay-4-2,962 galaxyEnaQ1Ay-4-2-2,443 galaxyEnaQ1Ay-4-2-2,589 galaxyEnaQ1Ay-4-2-2,599 galaxyEnaQ1Ay-4-2-2,615 galaxyEnaQ1Ay-4-2-2,685 galaxyEnaQ1Ay-4-2-2,852 galaxyEnaQ1Ay-4-2-2,891 galaxyEnaQ1Ay-4-2-2,962 galaxyEnaQ1Ay-43,443 galaxyEnaQ1Ay-43,589 galaxyEnaQ1Ay-43,599 galaxyEnaQ1Ay-43,615 galaxyEnaQ1Ay-43,685 galaxyEnaQ1Ay-43,852 galaxyEnaQ1Ay-43,891 galaxyEnaQ1Ay-43,962 galaxyEnaQ1Ba-1-17,443 galaxyEnaQ1Ba-1-17,589 galaxyEnaQ1Ba-1-17,599 galaxyEnaQ1Ba-1-17,615 galaxyEnaQ1Ba-1-17,685 galaxyEnaQ1Ba-1-17,852 galaxyEnaQ1Ba-1-17,891 galaxyEnaQ1Ba-1-17,962 galaxyEnaQ2Ay-120,443 galaxyEnaQ2Ay-120,589 galaxyEnaQ2Ay-120,599 galaxyEnaQ2Ay-120,615 galaxyEnaQ2Ay-120,685 galaxyEnaQ2Ay-120,852 galaxyEnaQ2Ay-120,891 galaxyEnaQ2Ay-120,962 galaxyEnaQ2Ay-122,443 galaxyEnaQ2Ay-122,589 galaxyEnaQ2Ay-122,599 galaxyEnaQ2Ay-122,615 galaxyEnaQ2Ay-122,685 galaxyEnaQ2Ay-122,852 galaxyEnaQ2Ay-122,891 galaxyEnaQ2Ay-122,962 galaxyEnaQ2Ay-4,443 galaxyEnaQ2Ay-4,589 galaxyEnaQ2Ay-4,599 galaxyEnaQ2Ay-4,615 galaxyEnaQ2Ay-4,685 galaxyEnaQ2Ay-4,852 galaxyEnaQ2Ay-4,891 galaxyEnaQ2Ay-4,962 galaxyEnaQ2Ay-5,443 galaxyEnaQ2Ay-5,589 galaxyEnaQ2Ay-5,599 galaxyEnaQ2Ay-5,615 galaxyEnaQ2Ay-5,685 galaxyEnaQ2Ay-5,852 galaxyEnaQ2Ay-5,891 galaxyEnaQ2Ay-5,962 galaxyEnaQ2Ay-6,443 galaxyEnaQ2Ay-6,589 galaxyEnaQ2Ay-6,599 galaxyEnaQ2Ay-6,615 galaxyEnaQ2Ay-6,685 galaxyEnaQ2Ay-6,852 galaxyEnaQ2Ay-6,891 galaxyEnaQ2Ay-6,962 galaxyEnaQ3Ay-4,443 galaxyEnaQ3Ay-4,589 galaxyEnaQ3Ay-4,599 galaxyEnaQ3Ay-4,615 galaxyEnaQ3Ay-4,685 galaxyEnaQ3Ay-4,852 galaxyEnaQ3Ay-4,891 galaxyEnaQ3Ay-4,962 galaxyEnaQ3Ay-5,443 galaxyEnaQ3Ay-5,589 galaxyEnaQ3Ay-5,599 galaxyEnaQ3Ay-5,615 galaxyEnaQ3Ay-5,685 galaxyEnaQ3Ay-5,852 galaxyEnaQ3Ay-5,891 galaxyEnaQ3Ay-5,962 galaxyEnaQ3Ay-9,443 galaxyEnaQ3Ay-9,589 galaxyEnaQ3Ay-9,599 galaxyEnaQ3Ay-9,615 galaxyEnaQ3Ay-9,685 galaxyEnaQ3Ay-9,852 galaxyEnaQ3Ay-9,891 galaxyEnaQ3Ay-9,962 galaxyEnaQ3B-1-1-7,443 galaxyEnaQ3B-1-1-7,589 galaxyEnaQ3B-1-1-7,599 galaxyEnaQ3B-1-1-7,615 galaxyEnaQ3B-1-1-7,685 galaxyEnaQ3B-1-1-7,852 galaxyEnaQ3B-1-1-7,891 galaxyEnaQ3B-1-1-7,962 galaxyEnaQ3B-1-617-2,443 galaxyEnaQ3B-1-617-2,589 galaxyEnaQ3B-1-617-2,599 galaxyEnaQ3B-1-617-2,615 galaxyEnaQ3B-1-617-2,685 galaxyEnaQ3B-1-617-2,852 galaxyEnaQ3B-1-617-2,891 galaxyEnaQ3B-1-617-2,962 kimNp,66 kimTranscripts,55 mccoy,291 ncbiGeneBGP,87 ncbiProducts,103 nextstrainClade,109 nextstrainParsimony,139 nextstrainParsimony,280 nextstrainSamples,255 nextstrainSamples,290 pbmShanghai,344 pond,119 potPathoIndel,162 potPathoIndel,178 problematicSites,183 problematicSites,210 problematicSites,254 problematicSites,298 problematicSites,319 problematicSites,335 rappuoli,298 recomb,136 rosettaMhc,57 sarsCov2Phylo,120 sarsCov2Phylo,152 sarsCov2Phylo,542 sarsCov2PhyloPub,133 sarsCov2PhyloPub,158 sarsCov2PhyloPub,567 sarsCov2PhyloPub,956 simpleRepeat,27 spikeMuts,19 spikeMuts,380 strainCons119way,164 strainCons44way,112 targets,211 transcriptome,47 transcriptome,285 unipCov2AliSwissprot,319 unipCov2Chain,549 unipCov2DisulfBond,545 unipCov2Domain,544 unipCov2Interest,225 unipCov2LocCytopl,544 unipCov2LocExtra,544 unipCov2LocSignal,545 unipCov2LocTransMemb,545 unipCov2Modif,548 unipCov2Mut,545 unipCov2Other,545 unipCov2Repeat,543 unipCov2Struct,547 vaccines,409 variantMuts,167 while Q0_tracks,458 Q0_tracks,506 Q0_tracks,534 Q1_tracks,460 Q1_tracks,508 Q1_tracks,536 Q2_tracks,460 Q2_tracks,508 Q2_tracks,536 Q3_tracks,460 Q3_tracks,508 Q3_tracks,536 galaxyEna,460 galaxyEna,508 galaxyEna,536 galaxyEnaQ0Ba-1,456 galaxyEnaQ0Ba-1,504 galaxyEnaQ0Ba-1,532 galaxyEnaQ0Ba-1-1,456 galaxyEnaQ0Ba-1-1,504 galaxyEnaQ0Ba-1-1,532 galaxyEnaQ0Ba-1-1-11,456 galaxyEnaQ0Ba-1-1-11,504 galaxyEnaQ0Ba-1-1-11,532 galaxyEnaQ0Ba-1-17,456 galaxyEnaQ0Ba-1-17,504 galaxyEnaQ0Ba-1-17,532 galaxyEnaQ0Ba-2,456 galaxyEnaQ0Ba-2,504 galaxyEnaQ0Ba-2,532 galaxyEnaQ1Ay-4,456 galaxyEnaQ1Ay-4,504 galaxyEnaQ1Ay-4,532 galaxyEnaQ1Ay-4-2,456 galaxyEnaQ1Ay-4-2,504 galaxyEnaQ1Ay-4-2,532 galaxyEnaQ1Ay-4-2-2,456 galaxyEnaQ1Ay-4-2-2,504 galaxyEnaQ1Ay-4-2-2,532 galaxyEnaQ1Ay-43,456 galaxyEnaQ1Ay-43,504 galaxyEnaQ1Ay-43,532 galaxyEnaQ1Ba-1-17,456 galaxyEnaQ1Ba-1-17,504 galaxyEnaQ1Ba-1-17,532 galaxyEnaQ2Ay-120,456 galaxyEnaQ2Ay-120,504 galaxyEnaQ2Ay-120,532 galaxyEnaQ2Ay-122,456 galaxyEnaQ2Ay-122,504 galaxyEnaQ2Ay-122,532 galaxyEnaQ2Ay-4,456 galaxyEnaQ2Ay-4,504 galaxyEnaQ2Ay-4,532 galaxyEnaQ2Ay-5,456 galaxyEnaQ2Ay-5,504 galaxyEnaQ2Ay-5,532 galaxyEnaQ2Ay-6,456 galaxyEnaQ2Ay-6,504 galaxyEnaQ2Ay-6,532 galaxyEnaQ3Ay-4,456 galaxyEnaQ3Ay-4,504 galaxyEnaQ3Ay-4,532 galaxyEnaQ3Ay-5,456 galaxyEnaQ3Ay-5,504 galaxyEnaQ3Ay-5,532 galaxyEnaQ3Ay-9,456 galaxyEnaQ3Ay-9,504 galaxyEnaQ3Ay-9,532 galaxyEnaQ3B-1-1-7,456 galaxyEnaQ3B-1-1-7,504 galaxyEnaQ3B-1-1-7,532 galaxyEnaQ3B-1-617-2,456 galaxyEnaQ3B-1-617-2,504 galaxyEnaQ3B-1-617-2,532 problematicSites,159 rapid,83 sarsCov2Phylo,733 strainCons119way,341 strainCons44way,289 variantMuts,892 white IgG_Z-score-_COVID-19_patients,156 IgM_Z-score-_COVID-19_patients,156 bpmIggCovidSum,165 bpmIgmCovidSum,165 gap,104 nextstrainSamples,402 pbm,165 sarsCov2Phylo,406 sarsCov2PhyloPub,435 who primers,169 sarsCov2Phylo,1004 sarsCov2PhyloPub,1124 variantMuts,46 variantMuts,64 variantMuts,241 variantMuts,1091 who_bnt162b2 vaccines,305 whole Q0_tracks,494 Q0_tracks,527 Q1_tracks,496 Q1_tracks,529 Q2_tracks,496 Q2_tracks,529 Q3_tracks,496 Q3_tracks,529 cpgIslandExt,167 cpgIslandExtUnmasked,170 cpgIslandSuper,167 galaxyEna,496 galaxyEna,529 galaxyEnaQ0Ba-1,492 galaxyEnaQ0Ba-1,525 galaxyEnaQ0Ba-1-1,492 galaxyEnaQ0Ba-1-1,525 galaxyEnaQ0Ba-1-1-11,492 galaxyEnaQ0Ba-1-1-11,525 galaxyEnaQ0Ba-1-17,492 galaxyEnaQ0Ba-1-17,525 galaxyEnaQ0Ba-2,492 galaxyEnaQ0Ba-2,525 galaxyEnaQ1Ay-4,492 galaxyEnaQ1Ay-4,525 galaxyEnaQ1Ay-4-2,492 galaxyEnaQ1Ay-4-2,525 galaxyEnaQ1Ay-4-2-2,492 galaxyEnaQ1Ay-4-2-2,525 galaxyEnaQ1Ay-43,492 galaxyEnaQ1Ay-43,525 galaxyEnaQ1Ba-1-17,492 galaxyEnaQ1Ba-1-17,525 galaxyEnaQ2Ay-120,492 galaxyEnaQ2Ay-120,525 galaxyEnaQ2Ay-122,492 galaxyEnaQ2Ay-122,525 galaxyEnaQ2Ay-4,492 galaxyEnaQ2Ay-4,525 galaxyEnaQ2Ay-5,492 galaxyEnaQ2Ay-5,525 galaxyEnaQ2Ay-6,492 galaxyEnaQ2Ay-6,525 galaxyEnaQ3Ay-4,492 galaxyEnaQ3Ay-4,525 galaxyEnaQ3Ay-5,492 galaxyEnaQ3Ay-5,525 galaxyEnaQ3Ay-9,492 galaxyEnaQ3Ay-9,525 galaxyEnaQ3B-1-1-7,492 galaxyEnaQ3B-1-1-7,525 galaxyEnaQ3B-1-617-2,492 galaxyEnaQ3B-1-617-2,525 icshape,214 multiz7way,134 strainCons119way,483 strainCons44way,431 whole-genome PhyloCSF_smooth,763 PhyloCSFpower,742 rapid,350 sarsCov2PhyloFull,14 sarsCov2PhyloPubAllFull,14 whose contacts,170 nextstrainParsimony,182 poranHla1,20 poranHla2,20 whu01 strainCons119way,1051 width cpgIslandExt,430 cpgIslandExt,467 cpgIslandExt,470 cpgIslandExt,478 cpgIslandExtUnmasked,433 cpgIslandExtUnmasked,470 cpgIslandExtUnmasked,473 cpgIslandExtUnmasked,481 cpgIslandSuper,430 cpgIslandSuper,467 cpgIslandSuper,470 cpgIslandSuper,478 wig strainCons119way,35 strainCons119way,39 strainCons44way,32 strainCons44way,36 wig-scores strainCons119way,2015 strainCons44way,1610 wigeon strainCons119way,92 wiggle IgG_Z-score-_COVID-19_patients,182 IgM_Z-score-_COVID-19_patients,182 bpmIggCovidSum,191 bpmIgmCovidSum,191 multiz7way,118 multiz7way,918 pbm,191 pbmShanghai,125 strainCons119way,467 strainCons119way,2296 strainCons44way,415 strainCons44way,1891 wiggles pyle,247 wigtobigwig pyle,242 wiki PhyloCSF_smooth,124 PhyloCSFpower,139 wikipedia spikeMuts,115 spikeMuts,411 vaccines,545 wild Starr_Bloom,37 Starr_Bloom_bind,34 wildtype Starr_Bloom,120 Starr_Bloom_bind,114 wilen pyle,285 will PhyloCSF_smooth,329 PhyloCSF_smooth,355 PhyloCSFpower,344 PhyloCSFpower,370 Q0_tracks,495 Q0_tracks,513 Q0_tracks,529 Q0_tracks,536 Q0_tracks,557 Q1_tracks,497 Q1_tracks,515 Q1_tracks,531 Q1_tracks,538 Q1_tracks,559 Q2_tracks,497 Q2_tracks,515 Q2_tracks,531 Q2_tracks,538 Q2_tracks,559 Q3_tracks,497 Q3_tracks,515 Q3_tracks,531 Q3_tracks,538 Q3_tracks,559 galaxyEna,497 galaxyEna,515 galaxyEna,531 galaxyEna,538 galaxyEna,559 galaxyEnaQ0Ba-1,493 galaxyEnaQ0Ba-1,511 galaxyEnaQ0Ba-1,527 galaxyEnaQ0Ba-1,534 galaxyEnaQ0Ba-1,555 galaxyEnaQ0Ba-1-1,493 galaxyEnaQ0Ba-1-1,511 galaxyEnaQ0Ba-1-1,527 galaxyEnaQ0Ba-1-1,534 galaxyEnaQ0Ba-1-1,555 galaxyEnaQ0Ba-1-1-11,493 galaxyEnaQ0Ba-1-1-11,511 galaxyEnaQ0Ba-1-1-11,527 galaxyEnaQ0Ba-1-1-11,534 galaxyEnaQ0Ba-1-1-11,555 galaxyEnaQ0Ba-1-17,493 galaxyEnaQ0Ba-1-17,511 galaxyEnaQ0Ba-1-17,527 galaxyEnaQ0Ba-1-17,534 galaxyEnaQ0Ba-1-17,555 galaxyEnaQ0Ba-2,493 galaxyEnaQ0Ba-2,511 galaxyEnaQ0Ba-2,527 galaxyEnaQ0Ba-2,534 galaxyEnaQ0Ba-2,555 galaxyEnaQ1Ay-4,493 galaxyEnaQ1Ay-4,511 galaxyEnaQ1Ay-4,527 galaxyEnaQ1Ay-4,534 galaxyEnaQ1Ay-4,555 galaxyEnaQ1Ay-4-2,493 galaxyEnaQ1Ay-4-2,511 galaxyEnaQ1Ay-4-2,527 galaxyEnaQ1Ay-4-2,534 galaxyEnaQ1Ay-4-2,555 galaxyEnaQ1Ay-4-2-2,493 galaxyEnaQ1Ay-4-2-2,511 galaxyEnaQ1Ay-4-2-2,527 galaxyEnaQ1Ay-4-2-2,534 galaxyEnaQ1Ay-4-2-2,555 galaxyEnaQ1Ay-43,493 galaxyEnaQ1Ay-43,511 galaxyEnaQ1Ay-43,527 galaxyEnaQ1Ay-43,534 galaxyEnaQ1Ay-43,555 galaxyEnaQ1Ba-1-17,493 galaxyEnaQ1Ba-1-17,511 galaxyEnaQ1Ba-1-17,527 galaxyEnaQ1Ba-1-17,534 galaxyEnaQ1Ba-1-17,555 galaxyEnaQ2Ay-120,493 galaxyEnaQ2Ay-120,511 galaxyEnaQ2Ay-120,527 galaxyEnaQ2Ay-120,534 galaxyEnaQ2Ay-120,555 galaxyEnaQ2Ay-122,493 galaxyEnaQ2Ay-122,511 galaxyEnaQ2Ay-122,527 galaxyEnaQ2Ay-122,534 galaxyEnaQ2Ay-122,555 galaxyEnaQ2Ay-4,493 galaxyEnaQ2Ay-4,511 galaxyEnaQ2Ay-4,527 galaxyEnaQ2Ay-4,534 galaxyEnaQ2Ay-4,555 galaxyEnaQ2Ay-5,493 galaxyEnaQ2Ay-5,511 galaxyEnaQ2Ay-5,527 galaxyEnaQ2Ay-5,534 galaxyEnaQ2Ay-5,555 galaxyEnaQ2Ay-6,493 galaxyEnaQ2Ay-6,511 galaxyEnaQ2Ay-6,527 galaxyEnaQ2Ay-6,534 galaxyEnaQ2Ay-6,555 galaxyEnaQ3Ay-4,493 galaxyEnaQ3Ay-4,511 galaxyEnaQ3Ay-4,527 galaxyEnaQ3Ay-4,534 galaxyEnaQ3Ay-4,555 galaxyEnaQ3Ay-5,493 galaxyEnaQ3Ay-5,511 galaxyEnaQ3Ay-5,527 galaxyEnaQ3Ay-5,534 galaxyEnaQ3Ay-5,555 galaxyEnaQ3Ay-9,493 galaxyEnaQ3Ay-9,511 galaxyEnaQ3Ay-9,527 galaxyEnaQ3Ay-9,534 galaxyEnaQ3Ay-9,555 galaxyEnaQ3B-1-1-7,493 galaxyEnaQ3B-1-1-7,511 galaxyEnaQ3B-1-1-7,527 galaxyEnaQ3B-1-1-7,534 galaxyEnaQ3B-1-1-7,555 galaxyEnaQ3B-1-617-2,493 galaxyEnaQ3B-1-617-2,511 galaxyEnaQ3B-1-617-2,527 galaxyEnaQ3B-1-617-2,534 galaxyEnaQ3B-1-617-2,555 nextstrainClade,67 nextstrainSamples,478 recomb,129 sarsCov2Phylo,508 sarsCov2PhyloPub,537 unipCov2AliSwissprot,140 unipCov2Chain,346 unipCov2DisulfBond,342 unipCov2Domain,341 unipCov2LocCytopl,341 unipCov2LocExtra,341 unipCov2LocSignal,342 unipCov2LocTransMemb,342 unipCov2Modif,345 unipCov2Mut,342 unipCov2Other,342 unipCov2Repeat,340 unipCov2Struct,344 vaccines,131 vaccines,173 window cas13Crispr,239 spikeMuts,255 strainCons119way,1938 strainCons44way,1533 window-based windowmaskerSdust,101 windowmasker windowmaskerSdust,7 windowmaskerSdust,21 windowmaskerSdust,23 windowmaskerSdust,51 windowmaskerSdust,58 windowmaskerSdust,65 windowmaskerSdust,100 windowmaskersdust windowmaskerSdust,83 windows gc5BaseBw,7 gc5BaseBw,28 winter spikeMuts,206 spikeMuts,211 wish treangen,170 wishing sarsCov2Phylo,801 with Calu3_07hpi,74 Calu3_07hpi,101 Calu3_07hpi,143 Calu3_07hpi,151 Calu3_07hpi,173 Calu3_07hpi,259 Calu3_07hpi,314 Calu3_07hpi,320 IgG_Z-score-_COVID-19_patients,23 IgG_Z-score-_COVID-19_patients,145 IgG_Z-score-_COVID-19_patients,162 IgG_Z-score-_COVID-19_patients,225 IgG_Z-score-_COVID-19_patients,290 IgG_Z-score-_COVID-19_patients,296 IgM_Z-score-_COVID-19_patients,23 IgM_Z-score-_COVID-19_patients,145 IgM_Z-score-_COVID-19_patients,162 IgM_Z-score-_COVID-19_patients,225 IgM_Z-score-_COVID-19_patients,290 IgM_Z-score-_COVID-19_patients,296 Kim_TRS_sgmRNAs,14 ORFs,72 ORFs,99 ORFs,141 ORFs,149 ORFs,171 ORFs,257 ORFs,312 ORFs,318 PhyloCSF_smooth,231 PhyloCSF_smooth,261 PhyloCSF_smooth,384 PhyloCSF_smooth,417 PhyloCSF_smooth,421 PhyloCSF_smooth,439 PhyloCSF_smooth,633 PhyloCSF_smooth,638 PhyloCSFpower,246 PhyloCSFpower,276 PhyloCSFpower,401 PhyloCSFpower,432 PhyloCSFpower,436 PhyloCSFpower,454 Q0_tracks,74 Q0_tracks,149 Q0_tracks,187 Q0_tracks,309 Q0_tracks,313 Q0_tracks,478 Q0_tracks,696 Q0_tracks,837 Q0_tracks,969 Q0_tracks,1162 Q1_tracks,76 Q1_tracks,151 Q1_tracks,189 Q1_tracks,311 Q1_tracks,315 Q1_tracks,480 Q1_tracks,698 Q1_tracks,839 Q1_tracks,971 Q1_tracks,1164 Q2_tracks,76 Q2_tracks,151 Q2_tracks,189 Q2_tracks,311 Q2_tracks,315 Q2_tracks,480 Q2_tracks,698 Q2_tracks,839 Q2_tracks,971 Q2_tracks,1164 Q3_tracks,76 Q3_tracks,151 Q3_tracks,189 Q3_tracks,311 Q3_tracks,315 Q3_tracks,480 Q3_tracks,698 Q3_tracks,839 Q3_tracks,971 Q3_tracks,1164 Starr_Bloom,206 Starr_Bloom,212 Starr_Bloom_bind,200 Starr_Bloom_bind,206 Vero6_05hpi,74 Vero6_05hpi,101 Vero6_05hpi,143 Vero6_05hpi,151 Vero6_05hpi,173 Vero6_05hpi,259 Vero6_05hpi,314 Vero6_05hpi,320 Vero6_24hpi,74 Vero6_24hpi,101 Vero6_24hpi,143 Vero6_24hpi,151 Vero6_24hpi,173 Vero6_24hpi,259 Vero6_24hpi,314 Vero6_24hpi,320 abEscape,101 abEscape,505 abEscape,536 abEscape,546 abEscape,658 abEscape,664 artic,73 artic,79 articV4,73 articV4,79 articV4_1,84 articV4_1,92 augustusGene,127 augustusGene,322 bloomEscMabAvg,105 bloomEscMabAvg,509 bloomEscMabAvg,540 bloomEscMabAvg,550 bloomEscMabAvg,662 bloomEscMabAvg,668 bloomEscMax,111 bloomEscMax,515 bloomEscMax,546 bloomEscMax,556 bloomEscMax,668 bloomEscMax,674 bloomEscSerumAvg,106 bloomEscSerumAvg,510 bloomEscSerumAvg,541 bloomEscSerumAvg,551 bloomEscSerumAvg,663 bloomEscSerumAvg,669 bloomEscTop,12 bloomEscTop,109 bloomEscTop,513 bloomEscTop,544 bloomEscTop,554 bloomEscTop,666 bloomEscTop,672 bpmIggCovidSum,32 bpmIggCovidSum,154 bpmIggCovidSum,171 bpmIggCovidSum,234 bpmIggCovidSum,299 bpmIggCovidSum,305 bpmIgmCovidSum,32 bpmIgmCovidSum,154 bpmIgmCovidSum,171 bpmIgmCovidSum,234 bpmIgmCovidSum,299 bpmIgmCovidSum,305 cas13Crispr,101 cas13Crispr,110 cas13Crispr,137 cas13Crispr,160 cas13Crispr,189 cas13Crispr,215 cas13Crispr,246 cas13Crispr,258 cas13Crispr,282 cas13Crispr,291 cas13Crispr,345 cas13Crispr,358 cas13Crispr,364 cd8escape,27 contacts,48 contacts,75 contacts,103 contacts,143 contacts,155 contacts,286 contacts,292 cpgIslandExt,19 cpgIslandExt,39 cpgIslandExt,141 cpgIslandExt,540 cpgIslandExtUnmasked,22 cpgIslandExtUnmasked,42 cpgIslandExtUnmasked,144 cpgIslandExtUnmasked,543 cpgIslandSuper,19 cpgIslandSuper,39 cpgIslandSuper,141 cpgIslandSuper,540 crisprDet,29 crisprDet,131 crisprDet,140 epitopes,63 escape,108 escape,512 escape,543 escape,553 escape,665 escape,671 galaxyEna,76 galaxyEna,151 galaxyEna,189 galaxyEna,311 galaxyEna,315 galaxyEna,480 galaxyEna,698 galaxyEna,839 galaxyEna,971 galaxyEna,1164 galaxyEnaQ0Ba-1,72 galaxyEnaQ0Ba-1,147 galaxyEnaQ0Ba-1,185 galaxyEnaQ0Ba-1,307 galaxyEnaQ0Ba-1,311 galaxyEnaQ0Ba-1,476 galaxyEnaQ0Ba-1,694 galaxyEnaQ0Ba-1,835 galaxyEnaQ0Ba-1,967 galaxyEnaQ0Ba-1,1160 galaxyEnaQ0Ba-1-1,72 galaxyEnaQ0Ba-1-1,147 galaxyEnaQ0Ba-1-1,185 galaxyEnaQ0Ba-1-1,307 galaxyEnaQ0Ba-1-1,311 galaxyEnaQ0Ba-1-1,476 galaxyEnaQ0Ba-1-1,694 galaxyEnaQ0Ba-1-1,835 galaxyEnaQ0Ba-1-1,967 galaxyEnaQ0Ba-1-1,1160 galaxyEnaQ0Ba-1-1-11,72 galaxyEnaQ0Ba-1-1-11,147 galaxyEnaQ0Ba-1-1-11,185 galaxyEnaQ0Ba-1-1-11,307 galaxyEnaQ0Ba-1-1-11,311 galaxyEnaQ0Ba-1-1-11,476 galaxyEnaQ0Ba-1-1-11,694 galaxyEnaQ0Ba-1-1-11,835 galaxyEnaQ0Ba-1-1-11,967 galaxyEnaQ0Ba-1-1-11,1160 galaxyEnaQ0Ba-1-17,72 galaxyEnaQ0Ba-1-17,147 galaxyEnaQ0Ba-1-17,185 galaxyEnaQ0Ba-1-17,307 galaxyEnaQ0Ba-1-17,311 galaxyEnaQ0Ba-1-17,476 galaxyEnaQ0Ba-1-17,694 galaxyEnaQ0Ba-1-17,835 galaxyEnaQ0Ba-1-17,967 galaxyEnaQ0Ba-1-17,1160 galaxyEnaQ0Ba-2,72 galaxyEnaQ0Ba-2,147 galaxyEnaQ0Ba-2,185 galaxyEnaQ0Ba-2,307 galaxyEnaQ0Ba-2,311 galaxyEnaQ0Ba-2,476 galaxyEnaQ0Ba-2,694 galaxyEnaQ0Ba-2,835 galaxyEnaQ0Ba-2,967 galaxyEnaQ0Ba-2,1160 galaxyEnaQ1Ay-4,72 galaxyEnaQ1Ay-4,147 galaxyEnaQ1Ay-4,185 galaxyEnaQ1Ay-4,307 galaxyEnaQ1Ay-4,311 galaxyEnaQ1Ay-4,476 galaxyEnaQ1Ay-4,694 galaxyEnaQ1Ay-4,835 galaxyEnaQ1Ay-4,967 galaxyEnaQ1Ay-4,1160 galaxyEnaQ1Ay-4-2,72 galaxyEnaQ1Ay-4-2,147 galaxyEnaQ1Ay-4-2,185 galaxyEnaQ1Ay-4-2,307 galaxyEnaQ1Ay-4-2,311 galaxyEnaQ1Ay-4-2,476 galaxyEnaQ1Ay-4-2,694 galaxyEnaQ1Ay-4-2,835 galaxyEnaQ1Ay-4-2,967 galaxyEnaQ1Ay-4-2,1160 galaxyEnaQ1Ay-4-2-2,72 galaxyEnaQ1Ay-4-2-2,147 galaxyEnaQ1Ay-4-2-2,185 galaxyEnaQ1Ay-4-2-2,307 galaxyEnaQ1Ay-4-2-2,311 galaxyEnaQ1Ay-4-2-2,476 galaxyEnaQ1Ay-4-2-2,694 galaxyEnaQ1Ay-4-2-2,835 galaxyEnaQ1Ay-4-2-2,967 galaxyEnaQ1Ay-4-2-2,1160 galaxyEnaQ1Ay-43,72 galaxyEnaQ1Ay-43,147 galaxyEnaQ1Ay-43,185 galaxyEnaQ1Ay-43,307 galaxyEnaQ1Ay-43,311 galaxyEnaQ1Ay-43,476 galaxyEnaQ1Ay-43,694 galaxyEnaQ1Ay-43,835 galaxyEnaQ1Ay-43,967 galaxyEnaQ1Ay-43,1160 galaxyEnaQ1Ba-1-17,72 galaxyEnaQ1Ba-1-17,147 galaxyEnaQ1Ba-1-17,185 galaxyEnaQ1Ba-1-17,307 galaxyEnaQ1Ba-1-17,311 galaxyEnaQ1Ba-1-17,476 galaxyEnaQ1Ba-1-17,694 galaxyEnaQ1Ba-1-17,835 galaxyEnaQ1Ba-1-17,967 galaxyEnaQ1Ba-1-17,1160 galaxyEnaQ2Ay-120,72 galaxyEnaQ2Ay-120,147 galaxyEnaQ2Ay-120,185 galaxyEnaQ2Ay-120,307 galaxyEnaQ2Ay-120,311 galaxyEnaQ2Ay-120,476 galaxyEnaQ2Ay-120,694 galaxyEnaQ2Ay-120,835 galaxyEnaQ2Ay-120,967 galaxyEnaQ2Ay-120,1160 galaxyEnaQ2Ay-122,72 galaxyEnaQ2Ay-122,147 galaxyEnaQ2Ay-122,185 galaxyEnaQ2Ay-122,307 galaxyEnaQ2Ay-122,311 galaxyEnaQ2Ay-122,476 galaxyEnaQ2Ay-122,694 galaxyEnaQ2Ay-122,835 galaxyEnaQ2Ay-122,967 galaxyEnaQ2Ay-122,1160 galaxyEnaQ2Ay-4,72 galaxyEnaQ2Ay-4,147 galaxyEnaQ2Ay-4,185 galaxyEnaQ2Ay-4,307 galaxyEnaQ2Ay-4,311 galaxyEnaQ2Ay-4,476 galaxyEnaQ2Ay-4,694 galaxyEnaQ2Ay-4,835 galaxyEnaQ2Ay-4,967 galaxyEnaQ2Ay-4,1160 galaxyEnaQ2Ay-5,72 galaxyEnaQ2Ay-5,147 galaxyEnaQ2Ay-5,185 galaxyEnaQ2Ay-5,307 galaxyEnaQ2Ay-5,311 galaxyEnaQ2Ay-5,476 galaxyEnaQ2Ay-5,694 galaxyEnaQ2Ay-5,835 galaxyEnaQ2Ay-5,967 galaxyEnaQ2Ay-5,1160 galaxyEnaQ2Ay-6,72 galaxyEnaQ2Ay-6,147 galaxyEnaQ2Ay-6,185 galaxyEnaQ2Ay-6,307 galaxyEnaQ2Ay-6,311 galaxyEnaQ2Ay-6,476 galaxyEnaQ2Ay-6,694 galaxyEnaQ2Ay-6,835 galaxyEnaQ2Ay-6,967 galaxyEnaQ2Ay-6,1160 galaxyEnaQ3Ay-4,72 galaxyEnaQ3Ay-4,147 galaxyEnaQ3Ay-4,185 galaxyEnaQ3Ay-4,307 galaxyEnaQ3Ay-4,311 galaxyEnaQ3Ay-4,476 galaxyEnaQ3Ay-4,694 galaxyEnaQ3Ay-4,835 galaxyEnaQ3Ay-4,967 galaxyEnaQ3Ay-4,1160 galaxyEnaQ3Ay-5,72 galaxyEnaQ3Ay-5,147 galaxyEnaQ3Ay-5,185 galaxyEnaQ3Ay-5,307 galaxyEnaQ3Ay-5,311 galaxyEnaQ3Ay-5,476 galaxyEnaQ3Ay-5,694 galaxyEnaQ3Ay-5,835 galaxyEnaQ3Ay-5,967 galaxyEnaQ3Ay-5,1160 galaxyEnaQ3Ay-9,72 galaxyEnaQ3Ay-9,147 galaxyEnaQ3Ay-9,185 galaxyEnaQ3Ay-9,307 galaxyEnaQ3Ay-9,311 galaxyEnaQ3Ay-9,476 galaxyEnaQ3Ay-9,694 galaxyEnaQ3Ay-9,835 galaxyEnaQ3Ay-9,967 galaxyEnaQ3Ay-9,1160 galaxyEnaQ3B-1-1-7,72 galaxyEnaQ3B-1-1-7,147 galaxyEnaQ3B-1-1-7,185 galaxyEnaQ3B-1-1-7,307 galaxyEnaQ3B-1-1-7,311 galaxyEnaQ3B-1-1-7,476 galaxyEnaQ3B-1-1-7,694 galaxyEnaQ3B-1-1-7,835 galaxyEnaQ3B-1-1-7,967 galaxyEnaQ3B-1-1-7,1160 galaxyEnaQ3B-1-617-2,72 galaxyEnaQ3B-1-617-2,147 galaxyEnaQ3B-1-617-2,185 galaxyEnaQ3B-1-617-2,307 galaxyEnaQ3B-1-617-2,311 galaxyEnaQ3B-1-617-2,476 galaxyEnaQ3B-1-617-2,694 galaxyEnaQ3B-1-617-2,835 galaxyEnaQ3B-1-617-2,967 galaxyEnaQ3B-1-617-2,1160 gap,52 gc5BaseBw,35 gold,51 gold,141 gordon2,67 gordon2,99 icshape,103 iedb,41 kimIvtCov,83 kimIvtCov,120 kimIvtCov,170 kimNp,94 kimRnaMod,120 kimRnaMod,126 kimTranscripts,97 kimTranscripts,182 kimTranscripts,213 kimTranscripts,228 kimTranscripts,271 kimTranscripts,300 kimTranscripts,337 kimTranscripts,343 mccoy,101 mccoy,505 mccoy,536 mccoy,546 mccoy,658 mccoy,664 microdel,69 microdel,112 microdel,128 microdel,146 microdel,151 multiz7way,155 multiz7way,573 multiz7way,683 multiz7way,755 multiz7way,1193 multiz7way,1263 ncbiGeneBGP,48 ncbiGeneBGP,176 ncbiProducts,64 ncbiProducts,192 nextstrainClade,199 nextstrainFreq,96 nextstrainFreq,192 nextstrainFreq,288 nextstrainGene,76 nextstrainGene,149 nextstrainParsimony,208 nextstrainParsimony,228 nextstrainParsimony,262 nextstrainParsimony,361 nextstrainParsimony,400 nextstrainSamples,79 nextstrainSamples,154 nextstrainSamples,335 nextstrainSamples,401 nextstrainSamples,502 nextstrainSamples,517 nextstrainSamples,729 nextstrainSamples,940 pbm,32 pbm,154 pbm,171 pbm,234 pbm,299 pbm,305 pbmShanghai,35 pbmShanghai,96 pbmShanghai,230 pbmShanghai,318 pbmShanghai,416 pbmShanghai,422 pdb,20 pdb,70 pdb,84 pdb,111 pdb,115 phyloGenes,38 phyloGenes,109 phyloGenes,135 phyloGenes,200 phyloGenes,225 phyloGenes,248 phyloGenes,285 phyloGenes,312 phyloGenes,334 phyloGenes,340 pond,34 pond,175 poranHla1,90 poranHla1,117 poranHla1,147 poranHla1,153 poranHla2,90 poranHla2,117 poranHla2,147 poranHla2,153 potPathoIndel,72 potPathoIndel,91 potPathoIndel,121 potPathoIndel,129 primers,285 primers,336 primers,365 problematicSites,170 problematicSites,237 problematicSites,275 problematicSites,519 problematicSites,552 problematicSites,577 publicAnnots,99 pyle,167 pyle,208 pyle,227 pyle,264 rapid,227 rapid,233 rappuoli,108 rappuoli,512 rappuoli,543 rappuoli,553 rappuoli,665 rappuoli,671 recomb,293 resist,38 resist,92 resistPred,16 resistPred,131 resistPred,184 rnaStructRangan,94 rosettaMhc,159 sarsCov2Phylo,108 sarsCov2Phylo,209 sarsCov2Phylo,217 sarsCov2Phylo,237 sarsCov2Phylo,244 sarsCov2Phylo,340 sarsCov2Phylo,405 sarsCov2Phylo,724 sarsCov2Phylo,804 sarsCov2Phylo,810 sarsCov2Phylo,890 sarsCov2Phylo,1088 sarsCov2PhyloMinAf001,8 sarsCov2PhyloMinAf01,8 sarsCov2PhyloPub,121 sarsCov2PhyloPub,216 sarsCov2PhyloPub,224 sarsCov2PhyloPub,244 sarsCov2PhyloPub,251 sarsCov2PhyloPub,351 sarsCov2PhyloPub,434 sarsCov2PhyloPub,831 sarsCov2PhyloPub,841 sarsCov2PhyloPub,874 sarsCov2PhyloPub,996 sarsCov2PhyloPub,1208 sarsCov2PhyloPubAllMinAf001,7 sarsCov2PhyloPubAllMinAf01,7 simpleRepeat,52 spikeMuts,83 spikeMuts,121 spikeMuts,302 strainCons119way,10 strainCons119way,238 strainCons119way,504 strainCons119way,923 strainCons119way,1032 strainCons119way,1515 strainCons119way,1842 strainCons119way,2074 strainCons119way,2128 strainCons119way,2571 strainCons119way,2641 strainCons119wayViewalign,9 strainCons119wayViewphastcons,10 strainCons119wayViewphyloP,10 strainCons44way,9 strainCons44way,186 strainCons44way,452 strainCons44way,871 strainCons44way,980 strainCons44way,1185 strainCons44way,1437 strainCons44way,1669 strainCons44way,1723 strainCons44way,2166 strainCons44way,2236 strainCons44wayViewalign,8 strainCons44wayViewphastcons,10 strainCons44wayViewphyloP,9 strainName44way,9 swift,53 swift,156 swift,162 targets,37 transcriptome,89 transcriptome,181 transcriptome,271 transcriptome,343 transcriptome,349 treangen,123 treangen,287 unipCov2AliSwissprot,84 unipCov2AliSwissprot,161 unipCov2AliSwissprot,164 unipCov2AliSwissprot,177 unipCov2AliSwissprot,231 unipCov2AliSwissprot,269 unipCov2AliSwissprot,410 unipCov2Chain,143 unipCov2Chain,165 unipCov2Chain,269 unipCov2Chain,414 unipCov2Chain,417 unipCov2Chain,430 unipCov2Chain,499 unipCov2Chain,640 unipCov2DisulfBond,139 unipCov2DisulfBond,161 unipCov2DisulfBond,265 unipCov2DisulfBond,410 unipCov2DisulfBond,413 unipCov2DisulfBond,426 unipCov2DisulfBond,495 unipCov2DisulfBond,636 unipCov2Domain,138 unipCov2Domain,160 unipCov2Domain,264 unipCov2Domain,409 unipCov2Domain,412 unipCov2Domain,425 unipCov2Domain,494 unipCov2Domain,635 unipCov2Interest,56 unipCov2Interest,90 unipCov2Interest,93 unipCov2Interest,106 unipCov2Interest,175 unipCov2Interest,293 unipCov2LocCytopl,138 unipCov2LocCytopl,160 unipCov2LocCytopl,264 unipCov2LocCytopl,409 unipCov2LocCytopl,412 unipCov2LocCytopl,425 unipCov2LocCytopl,494 unipCov2LocCytopl,635 unipCov2LocExtra,138 unipCov2LocExtra,160 unipCov2LocExtra,264 unipCov2LocExtra,409 unipCov2LocExtra,412 unipCov2LocExtra,425 unipCov2LocExtra,494 unipCov2LocExtra,635 unipCov2LocSignal,139 unipCov2LocSignal,161 unipCov2LocSignal,265 unipCov2LocSignal,410 unipCov2LocSignal,413 unipCov2LocSignal,426 unipCov2LocSignal,495 unipCov2LocSignal,636 unipCov2LocTransMemb,139 unipCov2LocTransMemb,161 unipCov2LocTransMemb,265 unipCov2LocTransMemb,410 unipCov2LocTransMemb,413 unipCov2LocTransMemb,426 unipCov2LocTransMemb,495 unipCov2LocTransMemb,636 unipCov2Modif,142 unipCov2Modif,164 unipCov2Modif,268 unipCov2Modif,413 unipCov2Modif,416 unipCov2Modif,429 unipCov2Modif,498 unipCov2Modif,639 unipCov2Mut,139 unipCov2Mut,161 unipCov2Mut,265 unipCov2Mut,410 unipCov2Mut,413 unipCov2Mut,426 unipCov2Mut,495 unipCov2Mut,636 unipCov2Other,139 unipCov2Other,161 unipCov2Other,265 unipCov2Other,410 unipCov2Other,413 unipCov2Other,426 unipCov2Other,495 unipCov2Other,636 unipCov2Repeat,137 unipCov2Repeat,159 unipCov2Repeat,263 unipCov2Repeat,408 unipCov2Repeat,411 unipCov2Repeat,424 unipCov2Repeat,493 unipCov2Repeat,634 unipCov2Struct,141 unipCov2Struct,163 unipCov2Struct,267 unipCov2Struct,412 unipCov2Struct,415 unipCov2Struct,428 unipCov2Struct,497 unipCov2Struct,638 vaccines,80 vaccines,153 vaccines,237 variantMuts,156 variantMuts,248 variantMuts,724 variantMuts,746 variantMuts,995 variantMuts,1386 varskip,79 varskip,85 weizmanOrfs,80 weizmanOrfs,107 weizmanOrfs,149 weizmanOrfs,157 weizmanOrfs,179 weizmanOrfs,265 weizmanOrfs,320 weizmanOrfs,326 windowmaskerSdust,54 within IgG_Z-score-_COVID-19_patients,359 IgM_Z-score-_COVID-19_patients,359 artic,142 articV4,142 articV4_1,155 bpmIggCovidSum,368 bpmIgmCovidSum,368 cas13Crispr,145 cas13Crispr,164 cas13Crispr,427 contacts,355 gold,116 kimRnaMod,189 kimTranscripts,406 ncbiGeneBGP,127 ncbiProducts,143 nextstrainSamples,174 pbm,368 phyloGenes,21 phyloGenes,403 poranHla1,216 poranHla2,216 potPathoIndel,105 problematicSites,60 rapid,296 resistPred,105 sarsCov2Phylo,432 sarsCov2Phylo,448 sarsCov2PhyloPub,461 sarsCov2PhyloPub,477 simpleRepeat,37 swift,225 transcriptome,412 treangen,30 unipCov2AliSwissprot,169 unipCov2AliSwissprot,357 unipCov2Chain,422 unipCov2Chain,587 unipCov2DisulfBond,418 unipCov2DisulfBond,583 unipCov2Domain,417 unipCov2Domain,582 unipCov2Interest,98 unipCov2Interest,263 unipCov2LocCytopl,417 unipCov2LocCytopl,582 unipCov2LocExtra,417 unipCov2LocExtra,582 unipCov2LocSignal,418 unipCov2LocSignal,583 unipCov2LocTransMemb,418 unipCov2LocTransMemb,583 unipCov2Modif,421 unipCov2Modif,586 unipCov2Mut,418 unipCov2Mut,583 unipCov2Other,418 unipCov2Other,583 unipCov2Repeat,416 unipCov2Repeat,581 unipCov2Struct,420 unipCov2Struct,585 varskip,148 within-lineage Q0_tracks,414 Q0_tracks,727 Q1_tracks,416 Q1_tracks,729 Q2_tracks,416 Q2_tracks,729 Q3_tracks,416 Q3_tracks,729 galaxyEna,416 galaxyEna,729 galaxyEnaQ0Ba-1,412 galaxyEnaQ0Ba-1,725 galaxyEnaQ0Ba-1-1,412 galaxyEnaQ0Ba-1-1,725 galaxyEnaQ0Ba-1-1-11,412 galaxyEnaQ0Ba-1-1-11,725 galaxyEnaQ0Ba-1-17,412 galaxyEnaQ0Ba-1-17,725 galaxyEnaQ0Ba-2,412 galaxyEnaQ0Ba-2,725 galaxyEnaQ1Ay-4,412 galaxyEnaQ1Ay-4,725 galaxyEnaQ1Ay-4-2,412 galaxyEnaQ1Ay-4-2,725 galaxyEnaQ1Ay-4-2-2,412 galaxyEnaQ1Ay-4-2-2,725 galaxyEnaQ1Ay-43,412 galaxyEnaQ1Ay-43,725 galaxyEnaQ1Ba-1-17,412 galaxyEnaQ1Ba-1-17,725 galaxyEnaQ2Ay-120,412 galaxyEnaQ2Ay-120,725 galaxyEnaQ2Ay-122,412 galaxyEnaQ2Ay-122,725 galaxyEnaQ2Ay-4,412 galaxyEnaQ2Ay-4,725 galaxyEnaQ2Ay-5,412 galaxyEnaQ2Ay-5,725 galaxyEnaQ2Ay-6,412 galaxyEnaQ2Ay-6,725 galaxyEnaQ3Ay-4,412 galaxyEnaQ3Ay-4,725 galaxyEnaQ3Ay-5,412 galaxyEnaQ3Ay-5,725 galaxyEnaQ3Ay-9,412 galaxyEnaQ3Ay-9,725 galaxyEnaQ3B-1-1-7,412 galaxyEnaQ3B-1-1-7,725 galaxyEnaQ3B-1-617-2,412 galaxyEnaQ3B-1-617-2,725 without IgG_Z-score-_COVID-19_patients,140 IgG_Z-score-_COVID-19_patients,363 IgM_Z-score-_COVID-19_patients,140 IgM_Z-score-_COVID-19_patients,363 Kim_non-TRS_sgmRNAs,14 PhyloCSF_smooth,576 PhyloCSFpower,591 Q0_tracks,1180 Q1_tracks,1182 Q2_tracks,1182 Q3_tracks,1182 abEscape,359 artic,146 articV4,146 articV4_1,159 bloomEscMabAvg,363 bloomEscMax,369 bloomEscSerumAvg,364 bloomEscTop,367 bpmIggCovidSum,149 bpmIggCovidSum,372 bpmIgmCovidSum,149 bpmIgmCovidSum,372 cas13Crispr,431 contacts,359 escape,366 galaxyEna,1182 galaxyEnaQ0Ba-1,1178 galaxyEnaQ0Ba-1-1,1178 galaxyEnaQ0Ba-1-1-11,1178 galaxyEnaQ0Ba-1-17,1178 galaxyEnaQ0Ba-2,1178 galaxyEnaQ1Ay-4,1178 galaxyEnaQ1Ay-4-2,1178 galaxyEnaQ1Ay-4-2-2,1178 galaxyEnaQ1Ay-43,1178 galaxyEnaQ1Ba-1-17,1178 galaxyEnaQ2Ay-120,1178 galaxyEnaQ2Ay-122,1178 galaxyEnaQ2Ay-4,1178 galaxyEnaQ2Ay-5,1178 galaxyEnaQ2Ay-6,1178 galaxyEnaQ3Ay-4,1178 galaxyEnaQ3Ay-5,1178 galaxyEnaQ3Ay-9,1178 galaxyEnaQ3B-1-1-7,1178 galaxyEnaQ3B-1-617-2,1178 kimRnaMod,193 kimTranscripts,410 mccoy,359 multiz7way,465 nextstrainSamples,853 pbm,149 pbm,372 phyloGenes,407 poranHla1,220 poranHla2,220 rapid,300 rappuoli,366 strainCons119way,815 strainCons44way,763 swift,229 transcriptome,416 varskip,152 wiv1 strainCons44way,1114 wiv16 strainCons44way,1137 wj multiz7way,1127 multiz7way,1170 multiz7way,1248 strainCons119way,2505 strainCons119way,2548 strainCons119way,2626 strainCons44way,2100 strainCons44way,2143 strainCons44way,2221 wk-012 strainCons119way,1221 wk-501 strainCons119way,1226 wk-521 strainCons119way,1216 wm windowmaskerSdust,1 wm_counts windowmaskerSdust,64 windowmaskerSdust,67 wolf phyloGenes,525 potPathoIndel,214 woo microdel,285 word vaccines,196 work Q0_tracks,1137 Q1_tracks,1139 Q2_tracks,1139 Q3_tracks,1139 crisprDet,150 galaxyEna,1139 galaxyEnaQ0Ba-1,1135 galaxyEnaQ0Ba-1-1,1135 galaxyEnaQ0Ba-1-1-11,1135 galaxyEnaQ0Ba-1-17,1135 galaxyEnaQ0Ba-2,1135 galaxyEnaQ1Ay-4,1135 galaxyEnaQ1Ay-4-2,1135 galaxyEnaQ1Ay-4-2-2,1135 galaxyEnaQ1Ay-43,1135 galaxyEnaQ1Ba-1-17,1135 galaxyEnaQ2Ay-120,1135 galaxyEnaQ2Ay-122,1135 galaxyEnaQ2Ay-4,1135 galaxyEnaQ2Ay-5,1135 galaxyEnaQ2Ay-6,1135 galaxyEnaQ3Ay-4,1135 galaxyEnaQ3Ay-5,1135 galaxyEnaQ3Ay-9,1135 galaxyEnaQ3B-1-1-7,1135 galaxyEnaQ3B-1-617-2,1135 nextstrainParsimony,406 nextstrainSamples,883 rfam,156 sarsCov2Phylo,803 sarsCov2Phylo,819 sarsCov2PhyloPub,902 variantMuts,1165 workflow Q0_tracks,843 Q0_tracks,892 Q0_tracks,923 Q0_tracks,930 Q1_tracks,845 Q1_tracks,894 Q1_tracks,925 Q1_tracks,932 Q2_tracks,845 Q2_tracks,894 Q2_tracks,925 Q2_tracks,932 Q3_tracks,845 Q3_tracks,894 Q3_tracks,925 Q3_tracks,932 galaxyEna,845 galaxyEna,894 galaxyEna,925 galaxyEna,932 galaxyEnaQ0Ba-1,841 galaxyEnaQ0Ba-1,890 galaxyEnaQ0Ba-1,921 galaxyEnaQ0Ba-1,928 galaxyEnaQ0Ba-1-1,841 galaxyEnaQ0Ba-1-1,890 galaxyEnaQ0Ba-1-1,921 galaxyEnaQ0Ba-1-1,928 galaxyEnaQ0Ba-1-1-11,841 galaxyEnaQ0Ba-1-1-11,890 galaxyEnaQ0Ba-1-1-11,921 galaxyEnaQ0Ba-1-1-11,928 galaxyEnaQ0Ba-1-17,841 galaxyEnaQ0Ba-1-17,890 galaxyEnaQ0Ba-1-17,921 galaxyEnaQ0Ba-1-17,928 galaxyEnaQ0Ba-2,841 galaxyEnaQ0Ba-2,890 galaxyEnaQ0Ba-2,921 galaxyEnaQ0Ba-2,928 galaxyEnaQ1Ay-4,841 galaxyEnaQ1Ay-4,890 galaxyEnaQ1Ay-4,921 galaxyEnaQ1Ay-4,928 galaxyEnaQ1Ay-4-2,841 galaxyEnaQ1Ay-4-2,890 galaxyEnaQ1Ay-4-2,921 galaxyEnaQ1Ay-4-2,928 galaxyEnaQ1Ay-4-2-2,841 galaxyEnaQ1Ay-4-2-2,890 galaxyEnaQ1Ay-4-2-2,921 galaxyEnaQ1Ay-4-2-2,928 galaxyEnaQ1Ay-43,841 galaxyEnaQ1Ay-43,890 galaxyEnaQ1Ay-43,921 galaxyEnaQ1Ay-43,928 galaxyEnaQ1Ba-1-17,841 galaxyEnaQ1Ba-1-17,890 galaxyEnaQ1Ba-1-17,921 galaxyEnaQ1Ba-1-17,928 galaxyEnaQ2Ay-120,841 galaxyEnaQ2Ay-120,890 galaxyEnaQ2Ay-120,921 galaxyEnaQ2Ay-120,928 galaxyEnaQ2Ay-122,841 galaxyEnaQ2Ay-122,890 galaxyEnaQ2Ay-122,921 galaxyEnaQ2Ay-122,928 galaxyEnaQ2Ay-4,841 galaxyEnaQ2Ay-4,890 galaxyEnaQ2Ay-4,921 galaxyEnaQ2Ay-4,928 galaxyEnaQ2Ay-5,841 galaxyEnaQ2Ay-5,890 galaxyEnaQ2Ay-5,921 galaxyEnaQ2Ay-5,928 galaxyEnaQ2Ay-6,841 galaxyEnaQ2Ay-6,890 galaxyEnaQ2Ay-6,921 galaxyEnaQ2Ay-6,928 galaxyEnaQ3Ay-4,841 galaxyEnaQ3Ay-4,890 galaxyEnaQ3Ay-4,921 galaxyEnaQ3Ay-4,928 galaxyEnaQ3Ay-5,841 galaxyEnaQ3Ay-5,890 galaxyEnaQ3Ay-5,921 galaxyEnaQ3Ay-5,928 galaxyEnaQ3Ay-9,841 galaxyEnaQ3Ay-9,890 galaxyEnaQ3Ay-9,921 galaxyEnaQ3Ay-9,928 galaxyEnaQ3B-1-1-7,841 galaxyEnaQ3B-1-1-7,890 galaxyEnaQ3B-1-1-7,921 galaxyEnaQ3B-1-1-7,928 galaxyEnaQ3B-1-617-2,841 galaxyEnaQ3B-1-617-2,890 galaxyEnaQ3B-1-617-2,921 galaxyEnaQ3B-1-617-2,928 workflowhub Q0_tracks,199 Q1_tracks,201 Q2_tracks,201 Q3_tracks,201 galaxyEna,201 galaxyEnaQ0Ba-1,197 galaxyEnaQ0Ba-1-1,197 galaxyEnaQ0Ba-1-1-11,197 galaxyEnaQ0Ba-1-17,197 galaxyEnaQ0Ba-2,197 galaxyEnaQ1Ay-4,197 galaxyEnaQ1Ay-4-2,197 galaxyEnaQ1Ay-4-2-2,197 galaxyEnaQ1Ay-43,197 galaxyEnaQ1Ba-1-17,197 galaxyEnaQ2Ay-120,197 galaxyEnaQ2Ay-122,197 galaxyEnaQ2Ay-4,197 galaxyEnaQ2Ay-5,197 galaxyEnaQ2Ay-6,197 galaxyEnaQ3Ay-4,197 galaxyEnaQ3Ay-5,197 galaxyEnaQ3Ay-9,197 galaxyEnaQ3B-1-1-7,197 galaxyEnaQ3B-1-617-2,197 workflows Q0_tracks,196 Q0_tracks,952 Q0_tracks,972 Q1_tracks,198 Q1_tracks,954 Q1_tracks,974 Q2_tracks,198 Q2_tracks,954 Q2_tracks,974 Q3_tracks,198 Q3_tracks,954 Q3_tracks,974 galaxyEna,198 galaxyEna,954 galaxyEna,974 galaxyEnaQ0Ba-1,194 galaxyEnaQ0Ba-1,950 galaxyEnaQ0Ba-1,970 galaxyEnaQ0Ba-1-1,194 galaxyEnaQ0Ba-1-1,950 galaxyEnaQ0Ba-1-1,970 galaxyEnaQ0Ba-1-1-11,194 galaxyEnaQ0Ba-1-1-11,950 galaxyEnaQ0Ba-1-1-11,970 galaxyEnaQ0Ba-1-17,194 galaxyEnaQ0Ba-1-17,950 galaxyEnaQ0Ba-1-17,970 galaxyEnaQ0Ba-2,194 galaxyEnaQ0Ba-2,950 galaxyEnaQ0Ba-2,970 galaxyEnaQ1Ay-4,194 galaxyEnaQ1Ay-4,950 galaxyEnaQ1Ay-4,970 galaxyEnaQ1Ay-4-2,194 galaxyEnaQ1Ay-4-2,950 galaxyEnaQ1Ay-4-2,970 galaxyEnaQ1Ay-4-2-2,194 galaxyEnaQ1Ay-4-2-2,950 galaxyEnaQ1Ay-4-2-2,970 galaxyEnaQ1Ay-43,194 galaxyEnaQ1Ay-43,950 galaxyEnaQ1Ay-43,970 galaxyEnaQ1Ba-1-17,194 galaxyEnaQ1Ba-1-17,950 galaxyEnaQ1Ba-1-17,970 galaxyEnaQ2Ay-120,194 galaxyEnaQ2Ay-120,950 galaxyEnaQ2Ay-120,970 galaxyEnaQ2Ay-122,194 galaxyEnaQ2Ay-122,950 galaxyEnaQ2Ay-122,970 galaxyEnaQ2Ay-4,194 galaxyEnaQ2Ay-4,950 galaxyEnaQ2Ay-4,970 galaxyEnaQ2Ay-5,194 galaxyEnaQ2Ay-5,950 galaxyEnaQ2Ay-5,970 galaxyEnaQ2Ay-6,194 galaxyEnaQ2Ay-6,950 galaxyEnaQ2Ay-6,970 galaxyEnaQ3Ay-4,194 galaxyEnaQ3Ay-4,950 galaxyEnaQ3Ay-4,970 galaxyEnaQ3Ay-5,194 galaxyEnaQ3Ay-5,950 galaxyEnaQ3Ay-5,970 galaxyEnaQ3Ay-9,194 galaxyEnaQ3Ay-9,950 galaxyEnaQ3Ay-9,970 galaxyEnaQ3B-1-1-7,194 galaxyEnaQ3B-1-1-7,950 galaxyEnaQ3B-1-1-7,970 galaxyEnaQ3B-1-617-2,194 galaxyEnaQ3B-1-617-2,950 galaxyEnaQ3B-1-617-2,970 world Q0_tracks,1152 Q1_tracks,1154 Q2_tracks,1154 Q3_tracks,1154 galaxyEna,1154 galaxyEnaQ0Ba-1,1150 galaxyEnaQ0Ba-1-1,1150 galaxyEnaQ0Ba-1-1-11,1150 galaxyEnaQ0Ba-1-17,1150 galaxyEnaQ0Ba-2,1150 galaxyEnaQ1Ay-4,1150 galaxyEnaQ1Ay-4-2,1150 galaxyEnaQ1Ay-4-2-2,1150 galaxyEnaQ1Ay-43,1150 galaxyEnaQ1Ba-1-17,1150 galaxyEnaQ2Ay-120,1150 galaxyEnaQ2Ay-122,1150 galaxyEnaQ2Ay-4,1150 galaxyEnaQ2Ay-5,1150 galaxyEnaQ2Ay-6,1150 galaxyEnaQ3Ay-4,1150 galaxyEnaQ3Ay-5,1150 galaxyEnaQ3Ay-9,1150 galaxyEnaQ3B-1-1-7,1150 galaxyEnaQ3B-1-617-2,1150 nextstrainParsimony,424 nextstrainSamples,901 sarsCov2Phylo,837 sarsCov2PhyloPub,47 sarsCov2PhyloPub,920 vaccines,36 vaccines,549 variantMuts,43 variantMuts,238 variantMuts,1183 worldwide epitopes,105 epitopes,113 nextstrainClade,51 nextstrainClade,132 nextstrainClade,234 nextstrainFreq,51 nextstrainFreq,144 nextstrainFreq,369 nextstrainGene,47 nextstrainGene,102 nextstrainGene,183 nextstrainParsimony,68 nextstrainParsimony,301 nextstrainSamples,62 nextstrainSamples,612 spikeMuts,73 worm multiz7way,1064 strainCons119way,2442 strainCons44way,2037 would Q0_tracks,1176 Q0_tracks,1209 Q1_tracks,1178 Q1_tracks,1211 Q2_tracks,1178 Q2_tracks,1211 Q3_tracks,1178 Q3_tracks,1211 cpgIslandExt,184 cpgIslandExtUnmasked,187 cpgIslandSuper,184 galaxyEna,1178 galaxyEna,1211 galaxyEnaQ0Ba-1,1174 galaxyEnaQ0Ba-1,1207 galaxyEnaQ0Ba-1-1,1174 galaxyEnaQ0Ba-1-1,1207 galaxyEnaQ0Ba-1-1-11,1174 galaxyEnaQ0Ba-1-1-11,1207 galaxyEnaQ0Ba-1-17,1174 galaxyEnaQ0Ba-1-17,1207 galaxyEnaQ0Ba-2,1174 galaxyEnaQ0Ba-2,1207 galaxyEnaQ1Ay-4,1174 galaxyEnaQ1Ay-4,1207 galaxyEnaQ1Ay-4-2,1174 galaxyEnaQ1Ay-4-2,1207 galaxyEnaQ1Ay-4-2-2,1174 galaxyEnaQ1Ay-4-2-2,1207 galaxyEnaQ1Ay-43,1174 galaxyEnaQ1Ay-43,1207 galaxyEnaQ1Ba-1-17,1174 galaxyEnaQ1Ba-1-17,1207 galaxyEnaQ2Ay-120,1174 galaxyEnaQ2Ay-120,1207 galaxyEnaQ2Ay-122,1174 galaxyEnaQ2Ay-122,1207 galaxyEnaQ2Ay-4,1174 galaxyEnaQ2Ay-4,1207 galaxyEnaQ2Ay-5,1174 galaxyEnaQ2Ay-5,1207 galaxyEnaQ2Ay-6,1174 galaxyEnaQ2Ay-6,1207 galaxyEnaQ3Ay-4,1174 galaxyEnaQ3Ay-4,1207 galaxyEnaQ3Ay-5,1174 galaxyEnaQ3Ay-5,1207 galaxyEnaQ3Ay-9,1174 galaxyEnaQ3Ay-9,1207 galaxyEnaQ3B-1-1-7,1174 galaxyEnaQ3B-1-1-7,1207 galaxyEnaQ3B-1-617-2,1174 galaxyEnaQ3B-1-617-2,1207 nextstrainParsimony,118 nextstrainParsimony,168 nextstrainParsimony,193 nextstrainSamples,825 pond,136 treangen,268 wr variantMuts,1337 wright PhyloCSF_smooth,740 PhyloCSFpower,706 written genscan,19 nextstrainClade,164 nextstrainFreq,156 nextstrainGene,114 nextstrainParsimony,313 simpleRepeat,69 wu IgG_Z-score-_COVID-19_patients,405 IgM_Z-score-_COVID-19_patients,405 bpmIggCovidSum,414 bpmIgmCovidSum,414 pbm,414 pbmShanghai,512 variantMuts,1211 variantMuts,1489 wuhan nextstrainSamples,870 sarsCov2Phylo,602 sarsCov2Phylo,672 sarsCov2PhyloPub,629 sarsCov2PhyloPub,696 sarsCov2PhyloPub,791 strainCons119way,1054 strainCons119way,1058 strainCons119way,1068 strainCons119way,1072 strainCons119way,1082 strainCons119way,1086 strainCons119way,1090 strainCons119way,1094 strainCons119way,1117 strainCons119way,1142 strainCons119way,1165 strainCons119way,1249 strainCons119way,1276 strainCons119way,1280 wuhan-hu-1 strainCons44way,998 swift,77 wuhcor1 IgG_Z-score-_COVID-19_patients,373 IgM_Z-score-_COVID-19_patients,373 PhyloCSF_smooth,401 PhyloCSFpower,416 addgene,172 artic,156 articV4,156 articV4_1,169 bpmIggCovidSum,382 bpmIgmCovidSum,382 cas13Crispr,441 contacts,369 icshape,126 icshape,158 kimRnaMod,203 kimTranscripts,420 ncbiGeneBGP,137 ncbiProducts,153 nextstrainFreq,215 nextstrainFreq,247 pbm,382 phyloGenes,417 poranHla1,230 poranHla2,230 rapid,310 swift,239 transcriptome,426 unipCov2AliSwissprot,367 unipCov2Chain,597 unipCov2DisulfBond,593 unipCov2Domain,592 unipCov2Interest,273 unipCov2LocCytopl,592 unipCov2LocExtra,592 unipCov2LocSignal,593 unipCov2LocTransMemb,593 unipCov2Modif,596 unipCov2Mut,593 unipCov2Other,593 unipCov2Repeat,591 unipCov2Struct,595 vaccines,271 vaccines,375 vaccines,399 varskip,162 wuhcor1.2bit primers,290 wuhcor1.chrom.sizes vaccines,352 wuhcor1.fa windowmaskerSdust,62 windowmaskerSdust,71 wuhcor1.vaccines.bb vaccines,353 vaccines,401 wuhcor1.vaccines.bigpsl vaccines,338 vaccines,351 wuhcor1.vaccines.psl vaccines,278 vaccines,280 vaccines,330 ww abEscape,832 bloomEscMabAvg,836 bloomEscMax,842 bloomEscSerumAvg,837 bloomEscTop,840 escape,839 mccoy,832 rappuoli,839 www.addgene.org addgene,266 www.ncbi.nlm.nih.gov ncbiGeneBGP,36 ncbiProducts,39 x nextstrainSamples,833 pbmShanghai,314 pbmShanghai,319 pbmShanghai,503 strainCons119way,2154 strainCons44way,1749 x-ray resistPred,67 rosettaMhc,61 x-y Calu3_07hpi,72 ORFs,70 Vero6_05hpi,72 Vero6_24hpi,72 abEscape,408 abEscape,452 bloomEscMabAvg,412 bloomEscMabAvg,456 bloomEscMax,418 bloomEscMax,462 bloomEscSerumAvg,413 bloomEscSerumAvg,457 bloomEscTop,416 bloomEscTop,460 escape,415 escape,459 mccoy,408 mccoy,452 rappuoli,415 rappuoli,459 weizmanOrfs,78 x_drop multiz7way,597 strainCons119way,947 strainCons44way,895 xbb variantAaMuts_XBB,2 variantAaMuts_XBB,6 variantMuts,442 variantMuts,1138 variantNucMuts_XBB,2 variantNucMuts_XBB,7 xbb.1.16 variantAaMuts_XBB_1_16,2 variantAaMuts_XBB_1_16,6 variantMuts,481 variantMuts,1140 variantNucMuts_XBB_1_16,2 variantNucMuts_XBB_1_16,7 xbb.1.5 variantAaMuts_XBB_1_5,2 variantAaMuts_XBB_1_5,6 variantMuts,460 variantMuts,1139 variantNucMuts_XBB_1_5,2 variantNucMuts_XBB_1_5,7 xbb.1.5.70 variantAaMuts_XBB_1_5_70,2 variantAaMuts_XBB_1_5_70,6 variantMuts,572 variantMuts,1153 variantNucMuts_XBB_1_5_70,2 variantNucMuts_XBB_1_5_70,7 xbb.1.9 variantAaMuts_XBB_1_9,2 variantAaMuts_XBB_1_9,6 variantMuts,516 variantMuts,1142 variantNucMuts_XBB_1_9,2 variantNucMuts_XBB_1_9,7 xbb.1.9.1 variantMuts,522 xbb.2.3 variantAaMuts_XBB_2_3,2 variantAaMuts_XBB_2_3,6 variantMuts,535 variantMuts,1143 variantNucMuts_XBB_2_3,2 variantNucMuts_XBB_2_3,7 xfer13.crg.eu Q0_tracks,1030 Q1_tracks,1032 Q2_tracks,1032 Q3_tracks,1032 galaxyEna,1032 galaxyEnaQ0Ba-1,1028 galaxyEnaQ0Ba-1-1,1028 galaxyEnaQ0Ba-1-1-11,1028 galaxyEnaQ0Ba-1-17,1028 galaxyEnaQ0Ba-2,1028 galaxyEnaQ1Ay-4,1028 galaxyEnaQ1Ay-4-2,1028 galaxyEnaQ1Ay-4-2-2,1028 galaxyEnaQ1Ay-43,1028 galaxyEnaQ1Ba-1-17,1028 galaxyEnaQ2Ay-120,1028 galaxyEnaQ2Ay-122,1028 galaxyEnaQ2Ay-4,1028 galaxyEnaQ2Ay-5,1028 galaxyEnaQ2Ay-6,1028 galaxyEnaQ3Ay-4,1028 galaxyEnaQ3Ay-5,1028 galaxyEnaQ3Ay-9,1028 galaxyEnaQ3B-1-1-7,1028 galaxyEnaQ3B-1-617-2,1028 xian IgG_Z-score-_COVID-19_patients,404 IgM_Z-score-_COVID-19_patients,404 bpmIggCovidSum,413 bpmIgmCovidSum,413 pbm,413 xiaobo IgG_Z-score-_COVID-19_patients,425 IgM_Z-score-_COVID-19_patients,425 bpmIggCovidSum,434 bpmIgmCovidSum,434 pbm,17 pbm,434 xiaohui icshape,185 xiaolin icshape,197 xiaomei IgG_Z-score-_COVID-19_patients,406 IgM_Z-score-_COVID-19_patients,406 bpmIggCovidSum,415 bpmIgmCovidSum,415 pbm,415 xin IgG_Z-score-_COVID-19_patients,408 IgM_Z-score-_COVID-19_patients,408 bpmIggCovidSum,417 bpmIgmCovidSum,417 pbm,417 xingguo-101 strainCons119way,1299 xiong icshape,194 xml unipCov2AliSwissprot,189 unipCov2Chain,442 unipCov2DisulfBond,438 unipCov2Domain,437 unipCov2Interest,118 unipCov2LocCytopl,437 unipCov2LocExtra,437 unipCov2LocSignal,438 unipCov2LocTransMemb,438 unipCov2Modif,441 unipCov2Mut,438 unipCov2Other,438 unipCov2Repeat,436 unipCov2Struct,440 xu icshape,196 xueqiu cas13Crispr,477 cas13Crispr,497 y Calu3_07hpi,347 Calu3_07hpi,357 ORFs,345 ORFs,355 PhyloCSFpower,723 Vero6_05hpi,347 Vero6_05hpi,357 Vero6_24hpi,347 Vero6_24hpi,357 epitopes,323 multiz7way,601 pbmShanghai,317 pbmShanghai,327 pbmShanghai,495 pbmShanghai,513 phyloGenes,556 problematicSites,566 problematicSites,588 recomb,323 sarsCov2Phylo,1077 sarsCov2Phylo,1099 sarsCov2PhyloPub,1197 sarsCov2PhyloPub,1219 strainCons119way,951 strainCons44way,899 treangen,298 weizmanOrfs,353 weizmanOrfs,363 y453f spikeMuts,130 y_bind_avg Y_bind_avg,1 y_drop multiz7way,599 strainCons119way,949 strainCons44way,897 y_expr_avg Y_expr_avg_Expression,1 yahalom-ronen Calu3_07hpi,356 ORFs,354 Vero6_05hpi,356 Vero6_24hpi,356 weizmanOrfs,362 yale pyle,25 yang kimIvtCov,177 kimTranscripts,464 multiz7way,1102 strainCons119way,1831 strainCons119way,2480 strainCons44way,1426 strainCons44way,2075 transcriptome,470 yanxia cas13Crispr,495 yap multiz7way,1214 strainCons119way,2592 strainCons44way,2187 ye recomb,332 year nextstrainClade,61 year-letter nextstrainClade,4 nextstrainFreqViewNewClades,1 nextstrainSamplesViewNewClades,1 years nextstrainClade,75 yeast Starr_Bloom,48 Starr_Bloom_bind,45 abEscape,84 bloomEscMabAvg,88 bloomEscMax,94 bloomEscSerumAvg,89 bloomEscTop,92 escape,91 mccoy,84 multiz7way,1066 rappuoli,91 strainCons119way,2444 strainCons44way,2039 yellow multiz7way,231 strainCons119way,580 strainCons44way,528 strainName119way,14 strainName44way,19 yip unipCov2AliSwissprot,466 unipCov2Chain,695 unipCov2DisulfBond,691 unipCov2Domain,690 unipCov2Interest,349 unipCov2LocCytopl,690 unipCov2LocExtra,690 unipCov2LocSignal,691 unipCov2LocTransMemb,691 unipCov2Modif,694 unipCov2Mut,691 unipCov2Other,691 unipCov2Repeat,689 unipCov2Struct,693 yl unipCov2AliSwissprot,467 unipCov2Chain,696 unipCov2DisulfBond,692 unipCov2Domain,691 unipCov2Interest,350 unipCov2LocCytopl,691 unipCov2LocExtra,691 unipCov2LocSignal,692 unipCov2LocTransMemb,692 unipCov2Modif,695 unipCov2Mut,692 unipCov2Other,692 unipCov2Repeat,690 unipCov2Struct,694 yn2012 strainCons119way,1484 yn2013 strainCons44way,1084 yn2018a strainCons44way,1046 yn2018b strainCons44way,1110 yn2018c strainCons44way,1078 yn2018d strainCons44way,1068 ynlf_31c strainCons44way,1104 yongzhe IgG_Z-score-_COVID-19_patients,422 IgM_Z-score-_COVID-19_patients,422 bpmIggCovidSum,431 bpmIgmCovidSum,431 pbm,431 york crisprDet,118 multiz7way,1097 strainCons119way,2475 strainCons44way,2070 treangen,96 treangen,119 treangen,209 you PhyloCSF_smooth,685 PhyloCSFpower,651 Q0_tracks,702 Q0_tracks,759 Q0_tracks,767 Q1_tracks,704 Q1_tracks,761 Q1_tracks,769 Q2_tracks,704 Q2_tracks,761 Q2_tracks,769 Q3_tracks,704 Q3_tracks,761 Q3_tracks,769 galaxyEna,704 galaxyEna,761 galaxyEna,769 galaxyEnaQ0Ba-1,700 galaxyEnaQ0Ba-1,757 galaxyEnaQ0Ba-1,765 galaxyEnaQ0Ba-1-1,700 galaxyEnaQ0Ba-1-1,757 galaxyEnaQ0Ba-1-1,765 galaxyEnaQ0Ba-1-1-11,700 galaxyEnaQ0Ba-1-1-11,757 galaxyEnaQ0Ba-1-1-11,765 galaxyEnaQ0Ba-1-17,700 galaxyEnaQ0Ba-1-17,757 galaxyEnaQ0Ba-1-17,765 galaxyEnaQ0Ba-2,700 galaxyEnaQ0Ba-2,757 galaxyEnaQ0Ba-2,765 galaxyEnaQ1Ay-4,700 galaxyEnaQ1Ay-4,757 galaxyEnaQ1Ay-4,765 galaxyEnaQ1Ay-4-2,700 galaxyEnaQ1Ay-4-2,757 galaxyEnaQ1Ay-4-2,765 galaxyEnaQ1Ay-4-2-2,700 galaxyEnaQ1Ay-4-2-2,757 galaxyEnaQ1Ay-4-2-2,765 galaxyEnaQ1Ay-43,700 galaxyEnaQ1Ay-43,757 galaxyEnaQ1Ay-43,765 galaxyEnaQ1Ba-1-17,700 galaxyEnaQ1Ba-1-17,757 galaxyEnaQ1Ba-1-17,765 galaxyEnaQ2Ay-120,700 galaxyEnaQ2Ay-120,757 galaxyEnaQ2Ay-120,765 galaxyEnaQ2Ay-122,700 galaxyEnaQ2Ay-122,757 galaxyEnaQ2Ay-122,765 galaxyEnaQ2Ay-4,700 galaxyEnaQ2Ay-4,757 galaxyEnaQ2Ay-4,765 galaxyEnaQ2Ay-5,700 galaxyEnaQ2Ay-5,757 galaxyEnaQ2Ay-5,765 galaxyEnaQ2Ay-6,700 galaxyEnaQ2Ay-6,757 galaxyEnaQ2Ay-6,765 galaxyEnaQ3Ay-4,700 galaxyEnaQ3Ay-4,757 galaxyEnaQ3Ay-4,765 galaxyEnaQ3Ay-5,700 galaxyEnaQ3Ay-5,757 galaxyEnaQ3Ay-5,765 galaxyEnaQ3Ay-9,700 galaxyEnaQ3Ay-9,757 galaxyEnaQ3Ay-9,765 galaxyEnaQ3B-1-1-7,700 galaxyEnaQ3B-1-1-7,757 galaxyEnaQ3B-1-1-7,765 galaxyEnaQ3B-1-617-2,700 galaxyEnaQ3B-1-617-2,757 galaxyEnaQ3B-1-617-2,765 icshape,82 kimNp,87 microdel,246 multiz7way,422 nextstrainClade,179 nextstrainFreq,171 nextstrainFreq,314 nextstrainGene,129 nextstrainParsimony,341 nextstrainSamples,960 phyloGenes,476 pond,58 primers,316 problematicSites,498 publicAnnots,83 publicAnnots,90 recomb,273 resistPred,164 sarsCov2Phylo,703 sarsCov2Phylo,910 sarsCov2PhyloPub,1016 vaccines,615 variantMuts,974 your ncbiGeneBGP,102 ncbiProducts,118 pond,68 transcriptome,220 unipCov2AliSwissprot,334 unipCov2Chain,564 unipCov2DisulfBond,560 unipCov2Domain,559 unipCov2Interest,240 unipCov2LocCytopl,559 unipCov2LocExtra,559 unipCov2LocSignal,560 unipCov2LocTransMemb,560 unipCov2Modif,563 unipCov2Mut,560 unipCov2Other,560 unipCov2Repeat,558 unipCov2Struct,562 vaccines,424 ys8011 strainCons119way,1069 yu IgG_Z-score-_COVID-19_patients,426 IgM_Z-score-_COVID-19_patients,426 bpmIggCovidSum,435 bpmIgmCovidSum,435 pbm,18 pbm,435 yunnan-01 strainCons119way,1178 yunnan2011 strainCons44way,1027 yuri potPathoIndel,212 z multiz7way,1103 multiz7way,1252 pdb,138 phyloGenes,554 strainCons119way,2481 strainCons119way,2630 strainCons44way,2076 strainCons44way,2225 z-score IgG_Z-score-_COVID-19_patients,2 IgG_Z-score-_COVID-19_patients,139 IgM_Z-score-_COVID-19_patients,2 IgM_Z-score-_COVID-19_patients,139 bpmIggCovidSum,148 bpmIgmCovidSum,148 pbm,148 z-scores IgG_Z-score-_COVID-19_patients,195 IgM_Z-score-_COVID-19_patients,195 bpmIggCovidSum,204 bpmIgmCovidSum,204 pbm,204 zarebski iedb,99 zebrafish augustusGene,202 augustusGene,278 zeng cas13Crispr,502 zenodo rapid,217 sarsCov2PhyloPub,1049 variantMuts,1443 zenodo.3958883 sarsCov2PhyloPub,1052 variantMuts,1446 zero swift,84 zhang IgG_Z-score-_COVID-19_patients,407 IgM_Z-score-_COVID-19_patients,407 bpmIggCovidSum,416 bpmIgmCovidSum,416 epitopes,322 icshape,34 icshape,192 icshape,207 multiz7way,1251 pbm,416 pbmShanghai,498 potPathoIndel,216 strainCons119way,2629 strainCons44way,2224 variantMuts,1395 zhao abEscape,787 bloomEscMabAvg,791 bloomEscMax,797 bloomEscSerumAvg,792 bloomEscTop,795 escape,794 mccoy,787 rappuoli,794 zhejiang2013 strainCons119way,1328 zheludev rnaStructRangan,104 zhou icshape,198 variantMuts,1484 zhuoming abEscape,771 bloomEscMabAvg,775 bloomEscMax,781 bloomEscSerumAvg,776 bloomEscTop,779 escape,778 mccoy,771 rappuoli,778 zinc unipCov2Chain,185 unipCov2DisulfBond,181 unipCov2Domain,180 unipCov2LocCytopl,180 unipCov2LocExtra,180 unipCov2LocSignal,181 unipCov2LocTransMemb,181 unipCov2Modif,184 unipCov2Mut,181 unipCov2Other,181 unipCov2Repeat,179 unipCov2Struct,183 zoom IgG_Z-score-_COVID-19_patients,118 IgM_Z-score-_COVID-19_patients,118 bpmIggCovidSum,127 bpmIgmCovidSum,127 kimRnaMod,64 multiz7way,308 pbm,127 pbmShanghai,184 strainCons119way,651 strainCons44way,599 zoomed rnaStructRangan,48 zoomed-in genscan,103 multiz7way,326 strainCons119way,669 strainCons44way,617 zooming rnaStructRangan,67 zoonotic potPathoIndel,147 zost abEscape,731 bloomEscMabAvg,735 bloomEscMax,741 bloomEscSerumAvg,736 bloomEscTop,739 escape,738 mccoy,731 rappuoli,738