# this file is used for building the archive track hub, it is template, not the final file. # doUniprot builds the final file. # if you modify this file, make sure that you also modify the original of the native track in trackDb/uniprot.ra track uniprot2020_06 shortLabel UniProt 2020_06 longLabel UniProt SwissProt/TrEMBL Protein Annotations, release 2020_06 #group genes visibility hide type bigBed 12 + exonNumbers off compositeTrack on allButtonPair on mouseOverField comments urls uniProtId="http://www.uniprot.org/uniprot/$$#section_features" pmids="https://www.ncbi.nlm.nih.gov/pubmed/$$" itemRgb on #dataVersion /gbdb/$D/uniprot/version.txt hideEmptySubtracks on track unipAliSwissprot2020_06 shortLabel SwissProt Aln. longLabel UCSC alignment of SwissProt proteins to genome - 2020_06 priority 1 parent uniprot2020_06 visibility hide type bigPsl bigDataUrl 2020_06/unipAliSwissprot.bb searchIndex name,acc urls acc="http://www.uniprot.org/uniprot/$$" hgncId="https://www.genenames.org/cgi-bin/gene_symbol_report?hgnc_id=$$" labelFields acc,uniprotName,geneName,hgncSym,refSeq,refSeqProt,ensProt,uniprotName mouseOverField protFullNames itemRgb off color 2,12,120 indelDoubleInsert on indelQueryInsert on baseColorTickColor contrastingColor baseColorUseCds given baseColorDefault genomicCodons showDiffBasesAllScales on track unipAliTrembl2020_06 shortLabel TrEMBL Aln. longLabel UCSC alignment of TrEMBL proteins to genome - 2020_06 priority 2 parent uniprot2020_06 visibility dense type bigPsl bigDataUrl 2020_06/unipAliTrembl.bb searchIndex name,acc urls acc="http://www.uniprot.org/uniprot/$$" hgncId="https://www.genenames.org/cgi-bin/gene_symbol_report?hgnc_id=$$" labelFields acc,uniprotName,geneName,hgncSym,refSeq,refSeqProt,ensProt,uniprotName mouseOverField protFullNames itemRgb off color 0,150,250 indelDoubleInsert on indelQueryInsert on baseColorTickColor contrastingColor baseColorUseCds given baseColorDefault genomicCodons showDiffBasesAllScales on track unipLocSignal2020_06 shortLabel Signal Peptide longLabel UniProt Signal Peptides - 2020_06 priority 3 parent uniprot2020_06 visibility dense type bigBed 12 + bigDataUrl 2020_06/unipLocSignal.bb color 255,0,150 itemRgb off filterValues.status Manually reviewed (Swiss-Prot),Unreviewed (TrEMBL) track unipLocExtra2020_06 shortLabel Extracellular longLabel UniProt Extracellular Domain - 2020_06 priority 4 parent uniprot2020_06 visibility dense type bigBed 12 + bigDataUrl 2020_06/unipLocExtra.bb color 0,150,255 itemRgb off filterValues.status Manually reviewed (Swiss-Prot),Unreviewed (TrEMBL) track unipLocTransMemb2020_06 shortLabel Transmembrane longLabel UniProt Transmembrane Domains - 2020_06 priority 5 parent uniprot2020_06 visibility dense type bigBed 12 + bigDataUrl 2020_06/unipLocTransMemb.bb color 0,150,0 itemRgb off filterValues.status Manually reviewed (Swiss-Prot),Unreviewed (TrEMBL) track unipLocCytopl2020_06 shortLabel Cytoplasmic longLabel UniProt Cytoplasmic Domains - 2020_06 priority 6 parent uniprot2020_06 visibility dense type bigBed 12 + bigDataUrl 2020_06/unipLocCytopl.bb color 255,150,0 itemRgb off filterValues.status Manually reviewed (Swiss-Prot),Unreviewed (TrEMBL) track unipChain2020_06 shortLabel Chains longLabel UniProt Mature Protein Products (Polypeptide Chains) - 2020_06 priority 7 parent uniprot2020_06 visibility dense type bigBed 12 + bigDataUrl 2020_06/unipChain.bb urls uniProtId="http://www.uniprot.org/uniprot/$$#ptm_processing" pmids="https://www.ncbi.nlm.nih.gov/pubmed/$$" filterValues.status Manually reviewed (Swiss-Prot),Unreviewed (TrEMBL) track unipInterest2020_06 shortLabel Interest longLabel UniProt Regions of Interest - 2020_06 priority 4 parent uniprot2020_06 visibility dense type bigBed 12 + bigDataUrl 2020_06/unipInterest.bb itemRgb off filterValues.status Manually reviewed (Swiss-Prot),Unreviewed (TrEMBL) track unipDomain2020_06 shortLabel Domains longLabel UniProt Domains - 2020_06 priority 8 parent uniprot2020_06 visibility dense type bigBed 12 + bigDataUrl 2020_06/unipDomain.bb urls uniProtId="http://www.uniprot.org/uniprot/$$#family_and_domains" pmids="https://www.ncbi.nlm.nih.gov/pubmed/$$" filterValues.status Manually reviewed (Swiss-Prot),Unreviewed (TrEMBL) track unipDisulfBond2020_06 shortLabel Disulf. Bonds longLabel UniProt Disulfide Bonds - 2020_06 priority 8 parent uniprot2020_06 visibility dense type bigBed 12 + bigDataUrl 2020_06/unipDisulfBond.bb filterValues.status Manually reviewed (Swiss-Prot),Unreviewed (TrEMBL) track unipModif2020_06 shortLabel AA Modifications longLabel UniProt Amino Acid Modifications - 2020_06 priority 9 parent uniprot2020_06 visibility dense type bigBed 12 + bigDataUrl 2020_06/unipModif.bb urls uniProtId="http://www.uniprot.org/uniprot/$$#aaMod_section" pmids="https://www.ncbi.nlm.nih.gov/pubmed/$$" filterValues.status Manually reviewed (Swiss-Prot),Unreviewed (TrEMBL) track unipMut2020_06 shortLabel Mutations longLabel UniProt Amino Acid Mutations - 2020_06 priority 10 parent uniprot2020_06 visibility dense type bigBed 12 + bigDataUrl 2020_06/unipMut.bb urls uniProtId="http://www.uniprot.org/uniprot/$$#pathology_and_biotech" pmids="https://www.ncbi.nlm.nih.gov/pubmed/$$" variationId="http://www.uniprot.org/uniprot/$$" track unipStruct2020_06 shortLabel Structure longLabel UniProt Protein Primary/Secondary Structure Annotations - 2020_06 priority 11 parent uniprot2020_06 visibility hide type bigBed 12 + bigDataUrl 2020_06/unipStruct.bb urls uniProtId="http://www.uniprot.org/uniprot/$$#structure" pmids="https://www.ncbi.nlm.nih.gov/pubmed/$$" filterValues.status Manually reviewed (Swiss-Prot),Unreviewed (TrEMBL) track unipOther2020_06 shortLabel Other Annot. longLabel UniProt Other Annotations - 2020_06 priority 11 parent uniprot2020_06 visibility dense type bigBed 12 + bigDataUrl 2020_06/unipOther.bb urls uniProtId="http://www.uniprot.org/uniprot/$$#family_and_domains" pmids="https://www.ncbi.nlm.nih.gov/pubmed/$$" filterValues.status Manually reviewed (Swiss-Prot),Unreviewed (TrEMBL) track unipRepeat2020_06 shortLabel Repeats longLabel UniProt Repeats - 2020_06 priority 12 parent uniprot2020_06 visibility dense type bigBed 12 + bigDataUrl 2020_06/unipRepeat.bb urls uniProtId="http://www.uniprot.org/uniprot/$$#family_and_domains" pmids="https://www.ncbi.nlm.nih.gov/pubmed/$$" filterValues.status Manually reviewed (Swiss-Prot),Unreviewed (TrEMBL) track unipConflict2020_06 shortLabel Seq. Conflicts longLabel UniProt Sequence Conflicts - 2020_06 priority 13 parent uniprot2020_06 off visibility dense type bigBed 12 + bigDataUrl 2020_06/unipConflict.bb urls uniProtId="http://www.uniprot.org/uniprot/$$#Sequence_conflict_section" pmids="https://www.ncbi.nlm.nih.gov/pubmed/$$" filterValues.status Manually reviewed (Swiss-Prot),Unreviewed (TrEMBL) #searchTable unipAliSwissprot #searchType bigBed #searchDescription UniProt/SwissProt manually curated Proteins mapped to the genome by UCSC #searchTable unipAliTrembl #searchType bigBed #searchDescription UniProt/TrEMBL predicted Proteins mapped to the genome by UCSC