This directory contains a dump of the UCSC genome annotation database for the Jan. 2007 assembly of the C. brenneri genome (UCSC version caePb1, WUSTL School of Medicine GSC version 4.0). The annotations were generated by UCSC and collaborators worldwide. Various strains of this Caenorhabditis are named Caenorhabditis n. sp. 4. PB2801, LKC28, CB5161, SB129, SB280. This assembly was produced by the Genome Sequencing Center at the Washington University School of Medicine in St. Louis (WUSTL). For more information on the C. brenneri genome, see the project website: http://genome.wustl.edu/genome.cgi?GENOME=Caenorhabditis%20brenneri. Files included in this directory (updated nightly): - *.sql files: the MySQL commands used to create the tables - *.txt.gz files: the database tables in a tab-delimited format compressed with gzip. To see descriptions of the tables underlying Genome Browser annotation tracks, select the table in the Table Browser: http://genome.ucsc.edu/cgi-bin/hgTables?db=caePb1 and click the "describe table schema" button. There is also a "view table schema" link on the configuration page for each track. --------------------------------------------------------------- If you plan to download a large file or multiple files from this directory, we recommend you use ftp rather than downloading the files via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to the directory goldenPath/caePb1/database/. To download multiple files, use the "mget" command: mget <filename1> <filename2> ... - or - mget -a (to download all the files in the directory) ------------------------------------------------------------------ The C. brenneri sequence is made freely available to the community by the Genome Sequencing Center at the WUSTL School of Medicine. Please see the WUSTL data use policy at http://genome.wustl.edu/data.cgi for data use restrictions and citation information.
Name Last modified Size Description
Parent Directory - bigFiles.txt.gz 2024-09-29 03:14 33 chromInfo.txt.gz 2007-08-03 15:02 69 grp.txt.gz 2014-03-02 03:40 208 history.txt.gz 2007-08-03 15:03 536 hgFindSpec.txt.gz 2023-03-28 13:46 638 chromInfo.sql 2007-08-03 15:02 1.2K windowmaskerSdust.sql 2007-08-03 15:05 1.3K grp.sql 2014-03-02 03:40 1.4K bigFiles.sql 2024-09-29 03:14 1.4K history.sql 2007-08-03 15:03 1.4K ctgPos2.sql 2007-08-03 15:02 1.4K chrUn_chainCb3Link.sql 2007-08-03 14:41 1.4K chrUn_chainCe4Link.sql 2007-08-03 14:50 1.4K chrUn_chainCaeRem2Link.sql 2007-08-03 14:24 1.4K chrUn_chainPriPac1Link.sql 2007-08-03 15:00 1.4K tableDescriptions.sql 2024-09-28 02:03 1.5K microsat.sql 2015-08-23 10:49 1.5K chrUn_gap.sql 2007-08-03 15:02 1.5K tableList.sql 2024-09-29 03:14 1.6K chrUn_gold.sql 2007-08-03 15:02 1.6K gbLoaded.sql 2020-08-20 23:58 1.6K chrUn_chainCb3.sql 2007-08-03 14:41 1.7K chrUn_chainCe4.sql 2007-08-03 14:42 1.7K chrUn_chainCaeRem2.sql 2007-08-04 10:35 1.7K chrUn_chainPriPac1.sql 2007-08-03 14:59 1.7K tRNAs.sql 2012-03-18 17:38 1.7K gc5Base.sql 2007-08-03 15:03 1.7K quality.sql 2007-08-03 15:04 1.7K xenoRefFlat.sql 2020-08-20 23:58 1.7K hgFindSpec.sql 2023-03-28 13:46 1.8K mrnaOrientInfo.sql 2016-06-05 09:09 1.8K chrUn_rmsk.sql 2007-08-03 15:02 1.9K augustusGene.sql 2015-07-26 10:34 1.9K xenoRefGene.sql 2020-08-20 23:56 2.0K simpleRepeat.sql 2007-08-03 15:05 2.0K trackDb.sql 2023-03-28 13:46 2.1K all_mrna.sql 2016-06-05 09:09 2.1K blastCe4SG.sql 2007-08-02 11:27 2.1K xenoRefSeqAli.sql 2020-08-20 23:58 2.1K netCb3.sql 2007-08-03 15:04 2.2K netCe4.sql 2007-08-03 15:04 2.2K netCaeRem2.sql 2007-08-03 15:04 2.2K netPriPac1.sql 2007-08-03 15:04 2.2K xenoMrna.sql 2016-02-21 10:41 2.3K tableList.txt.gz 2024-09-29 03:14 2.6K mrnaOrientInfo.txt.gz 2016-06-05 09:09 3.3K tableDescriptions.txt.gz 2024-09-28 02:03 5.0K microsat.txt.gz 2015-08-23 10:49 8.1K all_mrna.txt.gz 2016-06-05 09:09 9.8K gbLoaded.txt.gz 2020-08-20 23:58 15K trackDb.txt.gz 2023-03-28 13:46 15K tRNAs.txt.gz 2012-03-18 17:38 25K chrUn_gold.txt.gz 2007-08-03 15:02 178K chrUn_gap.txt.gz 2007-08-03 15:02 379K ctgPos2.txt.gz 2007-08-03 15:02 396K gc5Base.txt.gz 2007-08-03 15:03 881K simpleRepeat.txt.gz 2007-08-03 15:05 1.1M chrUn_rmsk.txt.gz 2007-08-03 15:02 1.4M netPriPac1.txt.gz 2007-08-03 15:04 2.0M blastCe4SG.txt.gz 2007-08-02 11:27 2.2M augustusGene.txt.gz 2015-07-26 10:34 2.2M quality.txt.gz 2007-08-03 15:04 3.6M netCb3.txt.gz 2007-08-03 15:04 4.8M chrUn_chainCb3.txt.gz 2007-08-03 14:41 5.2M netCe4.txt.gz 2007-08-03 15:04 6.6M netCaeRem2.txt.gz 2007-08-03 15:04 8.1M windowmaskerSdust.txt.gz 2007-08-03 15:05 9.1M xenoRefFlat.txt.gz 2020-08-20 23:58 11M xenoRefGene.txt.gz 2020-08-20 23:56 13M xenoRefSeqAli.txt.gz 2020-08-20 23:58 14M chrUn_chainCb3Link.txt.gz 2007-08-03 14:42 27M chrUn_chainPriPac1.txt.gz 2007-08-03 15:00 30M chrUn_chainPriPac1Link.txt.gz 2007-08-03 15:01 55M xenoMrna.txt.gz 2016-02-21 10:41 98M chrUn_chainCe4.txt.gz 2007-08-03 14:47 188M chrUn_chainCaeRem2.txt.gz 2007-08-04 10:38 200M chrUn_chainCe4Link.txt.gz 2007-08-03 14:55 295M chrUn_chainCaeRem2Link.txt.gz 2007-08-03 14:33 474M