This directory contains reciprocal-best netted chains for canFam5-hg38.
- canFam5.hg38.rbest.net.gz: canFam5-referenced recip.best net to hg38.
- canFam5.hg38.rbest.chain.gz: chains extracted from the recip.best
net. These can be passed to the liftOver program to translate coords
from canFam5 to hg38 through the recip.best net.
- hg38.canFam5.rbest.net.gz: hg38-referenced recip.best net.
- hg38.canFam5.rbest.chain.gz: recip.best "liftOver" chains.
- axtRBestNet/canFam5.hg38.rbest.axt.gz reciprocal best alignments in
AXT format
See also, description of AXT format::
http://genome.ucsc.edu/goldenPath/help/axt.html
description of CHAIN format:
http://genome.ucsc.edu/goldenPath/help/chain.html
description of NET format:
http://genome.ucsc.edu/goldenPath/help/net.html
Name Last modified Size Description
Parent Directory -
axtRBestNet/ 2021-01-21 15:41 -
canFam5.hg38.rbest.chain.gz 2020-08-17 15:55 82M
canFam5.hg38.rbest.net.gz 2020-08-17 15:57 135M
hg38.canFam5.rbest.chain.gz 2020-08-17 15:54 83M
hg38.canFam5.rbest.net.gz 2020-08-17 15:53 152M
md5sum.txt 2020-08-17 15:57 244