This directory contains a dump of the UCSC genome annotation database for the
    Oct. 2020 (Dog10K_Boxer_Tasha/canFam6) assembly of the dog genome
    (canFam6, Dog Genome Sequencing Consortium) .

The annotations were generated by UCSC and collaborators worldwide.

For more information about this assembly, please note the NCBI resources:
    https://www.ncbi.nlm.nih.gov/genome/85
    https://www.ncbi.nlm.nih.gov/genome/assembly/8227741
    https://www.ncbi.nlm.nih.gov/bioproject/13179
    https://www.ncbi.nlm.nih.gov/biosample/SAMN02953603

Files included in this directory (updated nightly):

  - *.sql files:  the MySQL commands used to create the tables

  - *.txt.gz files: the database tables in a tab-delimited format
    compressed with gzip.

To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
  http://genome.ucsc.edu/cgi-bin/hgTables?db=canFam6
and click the "describe table schema" button.  There is also a "view
table schema" link on the configuration page for each track.

---------------------------------------------------------------
If you plan to download a large file or multiple files from this
directory, we recommend you use ftp rather than downloading the files
via our website. To do so, ftp to hgdownload.soe.ucsc.edu, then go to
the directory goldenPath/canFam6/database/. To download multiple
files, use the "mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory)

Alternate methods to ftp access.

Using an rsync command to download the entire directory:
    rsync -avzP rsync://hgdownload.soe.ucsc.edu/goldenPath/canFam6/database/ .
For a single file, e.g. gc5Base.txt.gz
    rsync -avzP 
        rsync://hgdownload.soe.ucsc.edu/goldenPath/canFam6/database/gc5Base.txt.gz .

Or with wget, all files:
    wget --timestamping 
        'ftp://hgdownload.soe.ucsc.edu/goldenPath/canFam6/database/*'
With wget, a single file:
    wget --timestamping 
        'ftp://hgdownload.soe.ucsc.edu/goldenPath/canFam6/database/gc5Base.txt.gz' 
        -O gc5Base.txt.gz

To uncompress the *.txt.gz files:
    gunzip <table>.txt.gz
The tables can be loaded directly from the .txt.gz compressed file.
It is not necessary to uncompress them to load into a database,
as shown in the example below.

To load one of the tables directly into your local mirror database,
for example the table chromInfo:
## create table from the sql definition
$ hgsql canFam6 < chromInfo.sql
## load data from the txt.gz file
$ zcat chromInfo.txt.gz | hgsql canFam6 --local-infile=1 
        -e 'LOAD DATA LOCAL INFILE "/dev/stdin" INTO TABLE chromInfo;'

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GenBank Data Usage

The GenBank database is designed to provide and encourage access within
the scientific community to the most up to date and comprehensive DNA
sequence information. Therefore, NCBI places no restrictions on the use
or distribution of the GenBank data. However, some submitters may claim
patent, copyright, or other intellectual property rights in all or a
portion of the data they have submitted. NCBI is not in a position to
assess the validity of such claims, and therefore cannot provide comment
or unrestricted permission concerning the use, copying, or distribution
of the information contained in GenBank.
-----------------------------------------------------------------------------
All the files and tables in this directory are freely usable for any purpose.

      Name                        Last modified      Size  Description
Parent Directory - gc5BaseBw.txt.gz 2021-05-12 11:40 66 crisprAllTargets.txt.gz 2021-05-23 08:52 69 ncbiRefSeqOther.txt.gz 2021-05-13 11:16 75 extNcbiRefSeq.txt.gz 2021-05-13 11:16 91 bigFiles.txt.gz 2022-07-03 03:03 119 grp.txt.gz 2021-05-12 11:40 213 history.txt.gz 2021-05-23 08:52 959 cytoBandIdeo.txt.gz 2021-05-13 01:39 1.0K hgFindSpec.txt.gz 2021-11-22 14:40 1.0K chromInfo.txt.gz 2021-05-12 11:40 1.1K gc5BaseBw.sql 2021-05-12 11:40 1.3K ncbiRefSeqOther.sql 2021-05-13 11:16 1.3K crisprAllTargets.sql 2021-05-23 08:52 1.3K ucscToRefSeq.txt.gz 2021-05-13 10:33 1.3K ucscToINSDC.txt.gz 2021-05-13 10:33 1.3K ncbiRefSeqCds.sql 2021-05-13 11:16 1.4K grp.sql 2021-05-12 11:40 1.4K bigFiles.sql 2022-07-03 03:03 1.4K ncbiRefSeqPepTable.sql 2021-05-13 11:16 1.4K chromInfo.sql 2021-05-12 11:40 1.4K tableDescriptions.sql 2021-11-22 06:34 1.4K chromAlias.sql 2021-05-13 10:21 1.4K ucscToINSDC.sql 2021-05-13 10:33 1.4K ucscToRefSeq.sql 2021-05-13 10:33 1.5K extNcbiRefSeq.sql 2021-05-13 11:16 1.5K microsat.sql 2021-05-12 16:58 1.5K windowmaskerSdust.sql 2021-05-12 18:25 1.5K cytoBandIdeo.sql 2021-05-13 01:39 1.5K chainHg38Link.sql 2021-05-18 09:37 1.6K chainMm10Link.sql 2021-05-18 09:17 1.6K chainMm39Link.sql 2021-05-18 20:14 1.6K tableList.sql 2022-07-03 03:03 1.6K seqNcbiRefSeq.sql 2021-05-13 11:16 1.6K history.sql 2021-05-23 08:52 1.6K gap.sql 2021-05-12 11:40 1.6K gold.sql 2021-05-12 11:40 1.7K genscan.sql 2021-05-13 11:26 1.7K cpgIslandExt.sql 2021-05-13 10:40 1.7K chainHg38.sql 2021-05-18 09:29 1.7K chainMm10.sql 2021-05-18 09:13 1.7K chainMm39.sql 2021-05-18 20:11 1.7K refFlat.sql 2021-05-18 10:35 1.7K cpgIslandExtUnmasked.sql 2021-05-12 15:00 1.7K xenoRefFlat.sql 2021-05-18 10:36 1.7K hgFindSpec.sql 2021-11-22 14:40 1.8K estOrientInfo.sql 2021-05-18 12:15 1.8K mrnaOrientInfo.sql 2021-05-18 12:15 1.8K rmsk.sql 2021-05-12 18:55 1.9K refGene.sql 2021-05-18 10:35 1.9K simpleRepeat.sql 2021-05-12 15:31 1.9K ncbiRefSeq.sql 2021-05-13 11:14 2.0K nestedRepeats.sql 2021-05-12 18:57 2.0K xenoRefGene.sql 2021-05-18 10:35 2.0K augustusGene.sql 2021-05-13 13:41 2.0K ncbiRefSeqCurated.sql 2021-05-13 11:14 2.0K ncbiRefSeqPredicted.sql 2021-05-13 11:14 2.0K ncbiRefSeqLink.sql 2021-05-13 11:14 2.0K trackDb.sql 2021-11-22 14:40 2.1K netHg38.sql 2021-05-18 09:40 2.1K netMm10.sql 2021-05-18 09:20 2.1K netMm39.sql 2021-05-18 20:17 2.1K all_est.sql 2021-05-18 12:15 2.1K all_mrna.sql 2021-05-18 10:07 2.1K xenoMrna.sql 2021-05-18 10:08 2.1K intronEst.sql 2021-05-18 12:15 2.1K refSeqAli.sql 2021-05-18 10:36 2.1K ncbiRefSeqPsl.sql 2021-05-13 11:14 2.1K xenoRefSeqAli.sql 2021-05-18 10:36 2.1K chromAlias.txt.gz 2021-05-13 10:21 2.2K tableList.txt.gz 2022-07-03 03:03 3.2K tableDescriptions.txt.gz 2021-11-22 06:34 6.0K gap.txt.gz 2021-05-12 11:40 13K gold.txt.gz 2021-05-12 11:40 22K trackDb.txt.gz 2021-11-22 14:40 31K mrnaOrientInfo.txt.gz 2021-05-18 12:15 87K refFlat.txt.gz 2021-05-18 10:35 165K refGene.txt.gz 2021-05-18 10:35 178K ncbiRefSeqCurated.txt.gz 2021-05-13 11:14 184K refSeqAli.txt.gz 2021-05-18 10:36 185K all_mrna.txt.gz 2021-05-18 10:07 221K ncbiRefSeqCds.txt.gz 2021-05-13 11:16 433K microsat.txt.gz 2021-05-12 16:58 576K cpgIslandExt.txt.gz 2021-05-13 10:40 1.0M cpgIslandExtUnmasked.txt.gz 2021-05-12 15:00 1.1M seqNcbiRefSeq.txt.gz 2021-05-13 11:16 1.4M augustusGene.txt.gz 2021-05-13 13:41 2.2M ncbiRefSeqLink.txt.gz 2021-05-13 11:14 2.4M genscan.txt.gz 2021-05-13 11:26 2.9M ncbiRefSeqPredicted.txt.gz 2021-05-13 11:14 4.1M estOrientInfo.txt.gz 2021-05-18 12:15 4.1M ncbiRefSeq.txt.gz 2021-05-13 11:14 4.3M ncbiRefSeqPsl.txt.gz 2021-05-13 11:14 6.1M intronEst.txt.gz 2021-05-18 12:15 8.7M xenoRefFlat.txt.gz 2021-05-18 10:36 10M xenoRefGene.txt.gz 2021-05-18 10:35 11M ncbiRefSeqPepTable.txt.gz 2021-05-13 11:16 12M nestedRepeats.txt.gz 2021-05-12 18:57 14M all_est.txt.gz 2021-05-18 12:15 16M xenoRefSeqAli.txt.gz 2021-05-18 10:36 21M simpleRepeat.txt.gz 2021-05-12 15:31 22M chainMm39.txt.gz 2021-05-18 20:11 48M chainMm10.txt.gz 2021-05-18 09:13 55M netMm10.txt.gz 2021-05-18 09:20 58M netMm39.txt.gz 2021-05-18 20:17 58M netHg38.txt.gz 2021-05-18 09:40 63M rmsk.txt.gz 2021-05-12 18:55 121M windowmaskerSdust.txt.gz 2021-05-12 18:25 123M chainHg38.txt.gz 2021-05-18 09:29 211M xenoMrna.txt.gz 2021-05-18 10:08 218M chainMm39Link.txt.gz 2021-05-18 20:14 421M chainMm10Link.txt.gz 2021-05-18 09:17 455M chainHg38Link.txt.gz 2021-05-18 09:37 914M