This directory contains a dump of the UCSC genome annotation
database for the Mar. 2004 freeze of the C. elegans genome from
WormBase (ftp://ftp.sanger.ac.uk/pub/wormbase/WS120/CHROMOSOMES/).
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=ce2
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
-----------------------------------------------------------------
If you plan to download a large file or multiple files from this
directory, we recommend that you use ftp rather than downloading the
files via our website. To do so, ftp to hgdownload.cse.ucsc.edu,
then go to the directory goldenPath/ce2/database/. To download multiple
files, use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
------------------------------------------------------------------
All the tables in this directory are freely available for public use.
The C. elegans sequence is made freely available to the community by the
Genome Sequencing Center at the WUSTL School of Medicine. Please see the
WUSTL data use policy at http://genome.wustl.edu/data.cgi for data use
restrictions and citation information.
Name Last modified Size Description
Parent Directory -
axtNetCb1.txt.gz 2004-05-10 10:43 1.6M
blatFr1.txt.gz 2004-05-10 10:43 1.6M
chrIII_blastzCb1.txt.gz 2004-05-10 10:43 10M
chrIII_chainCb1.txt.gz 2004-05-10 10:43 3.6M
chrIII_chainCb1Link.txt.gz 2004-05-10 10:43 8.6M
chrIII_gap.txt.gz 2004-05-10 10:44 123
chrIII_gold.txt.gz 2004-05-10 10:44 6.9K
chrIII_rmsk.txt.gz 2004-05-10 10:44 392K
chrIII_wabaCbr.txt.gz 2004-05-10 10:44 2.2M
chrII_blastzCb1.txt.gz 2004-05-10 10:44 10M
chrII_chainCb1.txt.gz 2004-05-10 10:44 3.5M
chrII_chainCb1Link.txt.gz 2004-05-10 10:44 9.1M
chrII_gap.txt.gz 2004-05-10 10:45 93
chrII_gold.txt.gz 2004-05-10 10:45 8.7K
chrII_rmsk.txt.gz 2004-05-10 10:45 347K
chrII_wabaCbr.txt.gz 2004-05-10 10:45 1.6M
chrIV_blastzCb1.txt.gz 2004-05-10 10:45 11M
chrIV_chainCb1.txt.gz 2004-05-10 10:45 3.8M
chrIV_chainCb1Link.txt.gz 2004-05-10 10:45 10M
chrIV_gap.txt.gz 2004-05-10 10:46 34
chrIV_gold.txt.gz 2004-05-10 10:46 8.7K
chrIV_rmsk.txt.gz 2004-05-10 10:46 381K
chrIV_wabaCbr.txt.gz 2004-05-10 10:46 2.5M
chrI_blastzCb1.txt.gz 2004-05-10 10:46 9.6M
chrI_chainCb1.txt.gz 2004-05-10 10:46 3.2M
chrI_gap.txt.gz 2004-05-10 10:46 33
chrI_gold.txt.gz 2004-05-10 10:46 7.9K
chrI_rmsk.txt.gz 2004-05-10 10:46 409K
chrI_wabaCbr.txt.gz 2004-05-10 10:46 1.5M
chrM_blastzCb1.txt.gz 2004-05-10 10:47 2.1K
chrM_chainCb1.txt.gz 2004-05-10 10:47 393
chrM_chainCb1Link.txt.gz 2004-05-10 10:47 2.0K
chrM_gap.txt.gz 2004-05-10 10:47 33
chrM_gold.txt.gz 2004-05-10 10:47 64
chrM_rmsk.txt.gz 2004-05-10 10:47 662
chrM_wabaCbr.txt.gz 2004-05-10 10:47 412
chrV_blastzCb1.txt.gz 2004-05-10 10:47 15M
chrV_chainCb1.txt.gz 2004-05-10 10:47 5.2M
chrV_chainCb1Link.txt.gz 2004-05-10 10:47 13M
chrV_gap.txt.gz 2004-05-10 10:48 33
chrV_gold.txt.gz 2004-05-10 10:48 12K
chrV_rmsk.txt.gz 2004-05-10 10:48 456K
chrV_wabaCbr.txt.gz 2004-05-10 10:48 1.8M
chrX_blastzCb1.txt.gz 2004-05-10 10:48 6.0M
chrX_chainCb1.txt.gz 2004-05-10 10:48 1.7M
chrX_chainCb1Link.txt.gz 2004-05-10 10:48 5.3M
chrX_gap.txt.gz 2004-05-10 10:48 33
chrX_gold.txt.gz 2004-05-10 10:48 11K
chrX_rmsk.txt.gz 2004-05-10 10:48 289K
chrX_wabaCbr.txt.gz 2004-05-10 10:48 1.0M
chromInfo.txt.gz 2004-05-10 10:48 140
gc5Base.txt.gz 2004-05-10 10:48 385K
miRNA.txt.gz 2004-05-10 10:48 2.3K
netCb1.txt.gz 2004-05-10 10:48 4.4M
orfToGene.txt.gz 2004-05-10 10:48 103K
rnaCluster.txt.gz 2004-05-10 10:48 349K
seq.txt.gz 2004-05-10 10:48 232K
simpleRepeat.txt.gz 2004-05-10 10:48 822K
twinscan.txt.gz 2004-05-10 10:48 1.1M
twinscanPep.txt.gz 2004-05-10 10:48 4.3M
wabaCbr.txt.gz 2004-05-10 10:51 130M
sangerGenefinder.txt.gz 2004-05-12 05:11 1.2M
chrIII_chainSelfLink.txt.gz 2004-05-21 05:05 11M
chrII_chainSelfLink.txt.gz 2004-05-21 05:05 9.3M
chrIV_chainSelfLink.txt.gz 2004-05-21 05:05 7.0M
chrI_chainSelfLink.txt.gz 2004-05-21 05:05 7.9M
chrV_chainSelfLink.txt.gz 2004-05-21 05:06 10M
chrX_chainSelfLink.txt.gz 2004-05-21 05:06 3.3M
chrIII_chainSelf.txt.gz 2004-05-21 05:06 1.4M
chrII_chainSelf.txt.gz 2004-05-21 05:06 1.3M
chrIV_chainSelf.txt.gz 2004-05-21 05:06 1.3M
chrI_chainSelf.txt.gz 2004-05-21 05:06 1.1M
chrV_chainSelf.txt.gz 2004-05-21 05:06 1.5M
chrX_chainSelf.txt.gz 2004-05-21 05:06 874K
sangerGene.txt.gz 2004-05-27 05:10 1.2M
sangerPep.txt.gz 2004-05-27 05:10 4.8M
sangerLinks.txt.gz 2004-05-27 05:10 539K
chrI_chainCb1Link.txt.gz 2004-06-01 07:23 8.2M
kimExpDistance.txt.gz 2004-06-07 07:34 118M
sangerBlastTab.txt.gz 2004-06-07 07:35 19M
sangerCanonical.txt.gz 2004-06-07 07:35 341K
sangerIsoforms.txt.gz 2004-06-07 07:35 106K
sangerToKim.txt.gz 2004-06-07 07:35 100K
sangerToPfam.txt.gz 2004-06-07 07:35 69K
sangerToRefSeq.txt.gz 2004-06-07 07:35 110K
extFile.txt.gz 2004-09-28 10:05 295
blastHg16KG.txt.gz 2004-09-28 10:05 600K
c_briggsae_pwMaf.txt.gz 2004-09-28 10:05 1.6M
phastCons.txt.gz 2004-09-28 10:05 2.3M
phastConsElements.txt.gz 2004-09-28 10:05 1.0M
geneid.txt.gz 2005-03-26 05:08 1.3M
geneidPep.txt.gz 2005-03-26 05:08 4.8M
wormP2P.txt.gz 2005-06-16 04:54 473K
picTar.txt.gz 2006-04-28 03:42 117K
mmBlastTab.txt.gz 2006-05-26 05:31 280K
rnBlastTab.sql 2006-07-22 11:29 1.6K
rnBlastTab.txt.gz 2006-07-22 11:29 236K
hgBlastTab.sql 2007-04-08 09:42 1.6K
hgBlastTab.txt.gz 2007-04-08 09:42 121K
dmBlastTab.sql 2007-08-30 18:04 1.6K
dmBlastTab.txt.gz 2007-08-30 18:04 111K
chrM_intronEst.sql 2008-03-18 03:55 2.2K
chrM_intronEst.txt.gz 2008-03-18 03:55 39
chrM_mrna.sql 2008-03-18 03:55 2.2K
chrM_mrna.txt.gz 2008-03-18 03:55 34
drBlastTab.sql 2010-04-04 10:26 1.8K
drBlastTab.txt.gz 2010-04-04 10:26 291K
history.sql 2010-07-04 14:53 1.5K
history.txt.gz 2010-07-04 14:53 1.0K
axtNetCb1.sql 2013-10-01 12:48 661
chrIV_chainCb1.sql 2013-10-01 12:48 859
chrI_gap.sql 2013-10-01 12:48 709
chrI_gold.sql 2013-10-01 12:48 786
blastHg16KG.sql 2013-10-01 12:48 1.3K
blatFr1.sql 2013-10-01 12:48 1.3K
c_briggsae_pwMaf.sql 2013-10-01 12:48 666
chrIII_blastzCb1.sql 2013-10-01 12:48 1.3K
chrIII_chainCb1.sql 2013-10-01 12:48 861
chrIII_chainCb1Link.sql 2013-10-01 12:48 584
chrIII_chainSelf.sql 2013-10-01 12:48 863
chrIII_chainSelfLink.sql 2013-10-01 12:48 586
chrIII_gap.sql 2013-10-01 12:48 713
chrIII_gold.sql 2013-10-01 12:48 790
chrIII_rmsk.sql 2013-10-01 12:48 1.1K
chrIII_wabaCbr.sql 2013-10-01 12:48 575
chrII_blastzCb1.sql 2013-10-01 12:48 1.3K
chrII_chainCb1.sql 2013-10-01 12:48 859
chrII_chainCb1Link.sql 2013-10-01 12:48 582
chrII_chainSelf.sql 2013-10-01 12:48 861
chrII_chainSelfLink.sql 2013-10-01 12:48 584
chrII_gap.sql 2013-10-01 12:48 711
chrII_gold.sql 2013-10-01 12:48 788
chrII_rmsk.sql 2013-10-01 12:48 1.0K
chrII_wabaCbr.sql 2013-10-01 12:48 573
chrIV_blastzCb1.sql 2013-10-01 12:48 1.3K
chrIV_chainCb1Link.sql 2013-10-01 12:48 582
chrIV_chainSelf.sql 2013-10-01 12:48 861
chrIV_chainSelfLink.sql 2013-10-01 12:48 584
chrIV_gap.sql 2013-10-01 12:48 711
chrIV_gold.sql 2013-10-01 12:48 788
chrIV_rmsk.sql 2013-10-01 12:48 1.0K
chrIV_wabaCbr.sql 2013-10-01 12:48 573
chrI_blastzCb1.sql 2013-10-01 12:48 1.3K
chrI_chainCb1.sql 2013-10-01 12:48 857
chrI_chainCb1Link.sql 2013-10-01 12:48 571
chrI_chainSelf.sql 2013-10-01 12:48 859
chrI_chainSelfLink.sql 2013-10-01 12:48 582
chrI_rmsk.sql 2013-10-01 12:48 1.0K
chrI_wabaCbr.sql 2013-10-01 12:48 571
chrM_blastzCb1.sql 2013-10-01 12:48 1.3K
chrM_chainCb1.sql 2013-10-01 12:48 857
chrM_chainCb1Link.sql 2013-10-01 12:48 580
chrM_gap.sql 2013-10-01 12:48 709
chrM_gold.sql 2013-10-01 12:48 786
chrM_rmsk.sql 2013-10-01 12:48 1.0K
chrM_wabaCbr.sql 2013-10-01 12:48 571
chrV_blastzCb1.sql 2013-10-01 12:48 1.3K
chrV_chainCb1.sql 2013-10-01 12:48 857
chrV_chainCb1Link.sql 2013-10-01 12:48 580
chrV_chainSelf.sql 2013-10-01 12:48 859
chrV_chainSelfLink.sql 2013-10-01 12:48 582
chrV_gap.sql 2013-10-01 12:48 709
chrV_gold.sql 2013-10-01 12:48 786
chrV_rmsk.sql 2013-10-01 12:48 1.0K
chrV_wabaCbr.sql 2013-10-01 12:48 571
chrX_blastzCb1.sql 2013-10-01 12:48 1.3K
chrX_chainCb1.sql 2013-10-01 12:48 857
chrX_chainCb1Link.sql 2013-10-01 12:48 580
chrX_chainSelf.sql 2013-10-01 12:48 859
chrX_chainSelfLink.sql 2013-10-01 12:48 582
chrX_gap.sql 2013-10-01 12:48 709
chrX_gold.sql 2013-10-01 12:48 786
chrX_rmsk.sql 2013-10-01 12:48 1.0K
chrX_wabaCbr.sql 2013-10-01 12:48 571
chromInfo.sql 2013-10-01 12:48 401
extFile.sql 2013-10-01 12:48 441
gc5Base.sql 2013-10-01 12:48 896
geneid.sql 2013-10-01 12:48 1.0K
geneidPep.sql 2013-10-01 12:48 324
kimExpDistance.sql 2013-10-01 12:48 390
miRNA.sql 2013-10-01 12:48 776
mmBlastTab.sql 2013-10-01 12:48 798
netCb1.sql 2013-10-01 12:48 1.3K
orfToGene.sql 2013-10-01 12:48 371
phastCons.sql 2013-10-01 12:48 891
phastConsElements.sql 2013-10-01 12:48 651
picTar.sql 2013-10-01 12:48 747
rnaCluster.sql 2013-10-01 12:48 953
sangerBlastTab.sql 2013-10-01 12:48 806
sangerCanonical.sql 2013-10-01 12:48 610
sangerGene.sql 2013-10-01 12:48 833
sangerGenefinder.sql 2013-10-01 12:48 1.1K
sangerIsoforms.sql 2013-10-01 12:48 403
sangerLinks.sql 2013-10-01 12:48 426
sangerPep.sql 2013-10-01 12:48 333
sangerToKim.sql 2013-10-01 12:48 373
sangerToPfam.sql 2013-10-01 12:48 368
sangerToRefSeq.sql 2013-10-01 12:48 379
seq.sql 2013-10-01 12:48 596
simpleRepeat.sql 2013-10-01 12:48 1.1K
twinscan.sql 2013-10-01 12:48 1.0K
twinscanPep.sql 2013-10-01 12:48 337
wabaCbr.sql 2013-10-01 12:48 832
wormP2P.sql 2013-10-01 12:48 353
grp.sql 2014-03-02 03:40 1.4K
grp.txt.gz 2014-03-02 03:40 223
augustusGene.sql 2015-07-26 11:22 1.9K
augustusGene.txt.gz 2015-07-26 11:22 1.3M
microsat.sql 2015-08-23 12:09 1.5K
microsat.txt.gz 2015-08-23 12:09 3.0K
chrI_est.sql 2016-06-05 09:18 2.4K
all_est.sql 2016-06-05 09:18 2.4K
chrI_est.txt.gz 2016-06-05 09:18 2.9M
all_est.txt.gz 2016-06-05 09:18 14M
chrI_intronEst.sql 2016-06-05 09:18 2.4K
chrI_intronEst.txt.gz 2016-06-05 09:18 2.1M
chrII_est.sql 2016-06-05 09:18 2.4K
chrII_est.txt.gz 2016-06-05 09:18 2.5M
chrIV_est.sql 2016-06-05 09:18 2.4K
chrIV_est.txt.gz 2016-06-05 09:18 2.2M
chrIII_est.sql 2016-06-05 09:18 2.4K
chrIII_est.txt.gz 2016-06-05 09:18 2.3M
chrIV_intronEst.sql 2016-06-05 09:18 2.4K
chrIII_intronEst.sql 2016-06-05 09:18 2.4K
chrIV_intronEst.txt.gz 2016-06-05 09:18 1.7M
chrIII_intronEst.txt.gz 2016-06-05 09:18 1.9M
chrII_intronEst.sql 2016-06-05 09:18 2.4K
chrII_intronEst.txt.gz 2016-06-05 09:18 2.1M
chrM_est.sql 2016-06-05 09:18 2.4K
chrM_est.txt.gz 2016-06-05 09:18 50K
chrV_est.sql 2016-06-05 09:18 2.4K
chrV_est.txt.gz 2016-06-05 09:18 2.2M
chrV_intronEst.sql 2016-06-05 09:18 2.4K
chrV_intronEst.txt.gz 2016-06-05 09:18 1.8M
chrX_est.sql 2016-06-05 09:18 2.4K
chrX_est.txt.gz 2016-06-05 09:18 1.8M
chrX_intronEst.sql 2016-06-05 09:18 2.4K
chrX_intronEst.txt.gz 2016-06-05 09:18 1.4M
estOrientInfo.sql 2016-06-05 09:18 1.9K
estOrientInfo.txt.gz 2016-06-05 09:18 4.0M
chrV_mrna.sql 2018-01-07 06:38 2.4K
chrV_mrna.txt.gz 2018-01-07 06:38 40K
chrI_mrna.sql 2020-05-07 17:18 2.4K
chrI_mrna.txt.gz 2020-05-07 17:18 40K
chrII_mrna.sql 2020-08-21 06:07 2.4K
chrII_mrna.txt.gz 2020-08-21 06:07 30K
chrIV_mrna.sql 2020-08-21 06:07 2.4K
chrIV_mrna.txt.gz 2020-08-21 06:07 112K
chrIII_mrna.sql 2020-08-21 06:07 2.4K
chrIII_mrna.txt.gz 2020-08-21 06:07 40K
chrX_mrna.sql 2020-08-21 06:07 2.4K
chrX_mrna.txt.gz 2020-08-21 06:07 47K
all_mrna.sql 2020-08-21 06:07 2.4K
all_mrna.txt.gz 2020-08-21 06:07 309K
refGene.sql 2020-08-21 06:36 1.8K
refGene.txt.gz 2020-08-21 06:36 1.9M
refFlat.sql 2020-08-21 06:39 1.9K
refFlat.txt.gz 2020-08-21 06:39 2.1M
xenoRefGene.sql 2020-08-21 06:44 1.9K
xenoRefGene.txt.gz 2020-08-21 06:44 1.7M
xenoRefFlat.sql 2020-08-21 06:44 1.7K
xenoRefFlat.txt.gz 2020-08-21 06:44 1.5M
mrnaOrientInfo.sql 2020-08-21 06:44 1.9K
mrnaOrientInfo.txt.gz 2020-08-21 06:44 828K
refSeqAli.sql 2020-08-21 06:44 2.4K
refSeqAli.txt.gz 2020-08-21 06:44 2.7M
xenoRefSeqAli.sql 2020-08-21 06:44 2.1K
xenoRefSeqAli.txt.gz 2020-08-21 06:44 1.7M
gbLoaded.sql 2020-08-21 06:44 1.7K
gbLoaded.txt.gz 2020-08-21 06:44 217K
trackDb.sql 2023-03-28 13:47 2.1K
trackDb.txt.gz 2023-03-28 13:47 24K
hgFindSpec.sql 2023-03-28 13:47 1.8K
hgFindSpec.txt.gz 2023-03-28 13:47 1.1K
tableDescriptions.sql 2024-11-16 02:03 1.5K
tableDescriptions.txt.gz 2024-11-16 02:03 6.4K
tableList.sql 2024-11-17 03:36 1.6K
tableList.txt.gz 2024-11-17 03:36 6.5K
bigFiles.sql 2024-11-17 03:36 1.4K
bigFiles.txt.gz 2024-11-17 03:36 33