This directory contains a dump of the UCSC genome annotation
database for the May 2003 freeze of the C. elegans genome from
WormBase (ftp://ftp.sanger.ac.uk/pub/wormbase/WS100/CHROMOSOMES/).
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=ce1
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
-----------------------------------------------------------------
If you plan to download a large file or multiple files from this
directory, we recommend that you use ftp rather than downloading the
files via our website. To do so, ftp to hgdownload.cse.ucsc.edu,
then go to the directory goldenPath/ceMay2003/database/. To download
multiple files, use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
------------------------------------------------------------------
All the tables in this directory are freely usable for any purpose
except for the following:
softberryGene.txt and softberryPep.txt - Free for academic
and nonprofit use. Commercial users please contact
Softberry Inc. at http://www.softberry.com.
The C. elegans sequence is made freely available to the community by the
Genome Sequencing Center at the WUSTL School of Medicine. Please see the
WUSTL data use policy at http://genome.wustl.edu/data.cgi for data use
restrictions and citation information.
Name Last modified Size Description
Parent Directory -
all_est.sql 2006-09-10 08:45 2.1K
all_est.txt.gz 2006-09-10 08:45 7.2M
all_mrna.sql 2013-10-01 12:48 1.3K
all_mrna.txt.gz 2003-06-24 12:22 137K
author.sql 2013-10-01 12:48 332
author.txt.gz 2003-06-24 12:22 30K
cds.sql 2013-10-01 12:48 326
cds.txt.gz 2003-06-24 12:22 20K
cell.sql 2013-10-01 12:48 328
cell.txt.gz 2003-06-24 12:22 44
chrIII_blastzCb1.sql 2013-10-01 12:48 1.3K
chrIII_blastzCb1.txt.gz 2003-06-24 12:22 15M
chrIII_blastzSelf.sql 2013-10-01 12:48 1.3K
chrIII_blastzSelf.txt.gz 2003-06-24 12:24 59M
chrIII_blatFugu.sql 2013-10-01 12:48 1.3K
chrIII_blatFugu.txt.gz 2003-06-24 12:27 219K
chrIII_cb1Chain.sql 2013-10-01 12:48 854
chrIII_cb1Chain.txt.gz 2003-06-24 12:27 5.5M
chrIII_cb1ChainLink.sql 2013-10-01 12:48 577
chrIII_cb1ChainLink.txt.gz 2003-06-24 12:28 13M
chrIII_chainSelf.sql 2013-10-01 12:48 856
chrIII_chainSelf.txt.gz 2003-06-24 12:29 22M
chrIII_chainSelfLink.sql 2013-10-01 12:48 579
chrIII_chainSelfLink.txt.gz 2003-06-24 12:31 56M
chrIII_est.sql 2013-10-01 12:48 1.3K
chrIII_est.txt.gz 2003-06-24 12:32 1.1M
chrIII_gap.sql 2013-10-01 12:48 696
chrIII_gap.txt.gz 2004-05-01 05:06 161
chrIII_gold.sql 2013-10-01 12:48 783
chrIII_gold.txt.gz 2003-06-24 12:32 6.9K
chrIII_mrna.sql 2013-10-01 12:48 1.3K
chrIII_mrna.txt.gz 2003-06-24 12:32 25K
chrIII_rmsk.sql 2013-10-01 12:48 1.0K
chrIII_rmsk.txt.gz 2003-06-24 12:32 370K
chrIII_wabaCbr.sql 2013-10-01 12:48 568
chrIII_wabaCbr.txt.gz 2003-06-24 12:32 2.2M
chrII_blastzCb1.sql 2013-10-01 12:48 1.3K
chrII_blastzCb1.txt.gz 2003-06-24 12:32 13M
chrII_blastzSelf.sql 2013-10-01 12:48 1.3K
chrII_blastzSelf.txt.gz 2003-06-24 12:33 42M
chrII_blatFugu.sql 2013-10-01 12:48 1.3K
chrII_blatFugu.txt.gz 2003-06-24 12:33 172K
chrII_cb1Chain.sql 2013-10-01 12:48 852
chrII_cb1Chain.txt.gz 2003-06-24 12:33 5.0M
chrII_cb1ChainLink.sql 2013-10-01 12:48 575
chrII_cb1ChainLink.txt.gz 2003-06-24 12:34 12M
chrII_chainSelf.sql 2013-10-01 12:48 854
chrII_chainSelf.txt.gz 2003-06-24 12:34 16M
chrII_chainSelfLink.sql 2013-10-01 12:48 577
chrII_chainSelfLink.txt.gz 2003-06-24 12:35 40M
chrII_est.sql 2013-10-01 12:48 1.3K
chrII_est.txt.gz 2003-06-24 12:36 1.0M
chrII_gap.sql 2013-10-01 12:48 694
chrII_gap.txt.gz 2004-05-01 05:06 93
chrII_gold.sql 2013-10-01 12:48 781
chrII_gold.txt.gz 2003-06-24 12:36 8.7K
chrII_mrna.sql 2013-10-01 12:48 1.3K
chrII_mrna.txt.gz 2003-06-24 12:36 17K
chrII_rmsk.sql 2013-10-01 12:48 1.0K
chrII_rmsk.txt.gz 2003-06-24 12:36 329K
chrII_wabaCbr.sql 2013-10-01 12:48 566
chrII_wabaCbr.txt.gz 2003-06-24 12:36 1.6M
chrIV_blastzCb1.sql 2013-10-01 12:48 1.3K
chrIV_blastzCb1.txt.gz 2003-06-24 12:36 16M
chrIV_blastzSelf.sql 2013-10-01 12:48 1.3K
chrIV_blastzSelf.txt.gz 2003-06-24 12:37 41M
chrIV_blatFugu.sql 2013-10-01 12:48 1.3K
chrIV_blatFugu.txt.gz 2003-06-24 12:38 228K
chrIV_cb1Chain.sql 2013-10-01 12:48 852
chrIV_cb1Chain.txt.gz 2003-06-24 12:38 5.6M
chrIV_cb1ChainLink.sql 2013-10-01 12:48 575
chrIV_cb1ChainLink.txt.gz 2003-06-24 12:38 14M
chrIV_chainSelf.sql 2013-10-01 12:48 854
chrIV_chainSelf.txt.gz 2003-06-24 12:38 16M
chrIV_chainSelfLink.sql 2013-10-01 12:48 577
chrIV_chainSelfLink.txt.gz 2003-06-24 12:39 39M
chrIV_est.sql 2013-10-01 12:48 1.3K
chrIV_est.txt.gz 2003-06-24 12:40 1.0M
chrIV_gap.sql 2013-10-01 12:48 694
chrIV_gap.txt.gz 2004-05-01 05:06 601
chrIV_gold.sql 2013-10-01 12:48 781
chrIV_gold.txt.gz 2003-06-24 12:40 8.7K
chrIV_mrna.sql 2013-10-01 12:48 1.3K
chrIV_mrna.txt.gz 2003-06-24 12:40 21K
chrIV_rmsk.sql 2013-10-01 12:48 1.0K
chrIV_rmsk.txt.gz 2003-06-24 12:40 358K
chrIV_wabaCbr.sql 2013-10-01 12:48 566
chrIV_wabaCbr.txt.gz 2003-06-24 12:40 2.5M
chrI_blastzCb1.sql 2013-10-01 12:48 1.3K
chrI_blastzCb1.txt.gz 2003-06-24 12:40 12M
chrI_blastzSelf.sql 2013-10-01 12:48 1.3K
chrI_blastzSelf.txt.gz 2003-06-24 12:41 47M
chrI_blatFugu.sql 2013-10-01 12:48 1.3K
chrI_blatFugu.txt.gz 2003-06-24 12:42 214K
chrI_cb1Chain.sql 2013-10-01 12:48 850
chrI_cb1Chain.txt.gz 2003-06-24 12:42 4.3M
chrI_cb1ChainLink.sql 2013-10-01 12:48 573
chrI_cb1ChainLink.txt.gz 2003-06-24 12:42 10M
chrI_chainSelf.sql 2013-10-01 12:48 852
chrI_chainSelf.txt.gz 2003-06-24 12:43 16M
chrI_chainSelfLink.sql 2013-10-01 12:48 575
chrI_chainSelfLink.txt.gz 2003-06-24 12:44 44M
chrI_est.sql 2013-10-01 12:48 1.3K
chrI_est.txt.gz 2003-06-24 12:45 1.3M
chrI_gap.sql 2013-10-01 12:48 692
chrI_gap.txt.gz 2004-05-01 05:06 82
chrI_gold.sql 2013-10-01 12:48 779
chrI_gold.txt.gz 2003-06-24 12:45 8.0K
chrI_mrna.sql 2013-10-01 12:48 1.3K
chrI_mrna.txt.gz 2003-06-24 12:45 26K
chrI_rmsk.sql 2013-10-01 12:48 1.0K
chrI_rmsk.txt.gz 2003-06-24 12:45 391K
chrI_wabaCbr.sql 2013-10-01 12:48 564
chrI_wabaCbr.txt.gz 2003-06-24 12:45 1.5M
chrM_blastzCb1.sql 2013-10-01 12:48 1.3K
chrM_blastzCb1.txt.gz 2003-06-24 12:45 2.1K
chrM_blastzSelf.sql 2013-10-01 12:48 1.3K
chrM_blastzSelf.txt.gz 2003-06-24 12:45 137
chrM_blatFugu.sql 2013-10-01 12:48 1.3K
chrM_blatFugu.txt.gz 2003-06-24 12:45 137
chrM_cb1Chain.sql 2013-10-01 12:48 850
chrM_cb1Chain.txt.gz 2003-06-24 12:45 391
chrM_cb1ChainLink.sql 2013-10-01 12:48 573
chrM_cb1ChainLink.txt.gz 2003-06-24 12:45 2.0K
chrM_chainSelf.sql 2013-10-01 12:48 852
chrM_chainSelf.txt.gz 2003-06-24 12:45 120
chrM_chainSelfLink.sql 2013-10-01 12:48 575
chrM_chainSelfLink.txt.gz 2003-06-24 12:45 97
chrM_est.sql 2013-10-01 12:48 1.3K
chrM_est.txt.gz 2003-06-24 12:45 36K
chrM_gap.sql 2013-10-01 12:48 709
chrM_gap.txt.gz 2004-05-01 05:06 33
chrM_gold.sql 2013-10-01 12:48 786
chrM_gold.txt.gz 2004-05-01 05:06 64
chrM_mrna.sql 2013-10-01 12:48 1.3K
chrM_mrna.txt.gz 2003-06-24 12:45 117
chrM_rmsk.sql 2013-10-01 12:48 1.0K
chrM_rmsk.txt.gz 2003-06-24 12:45 662
chrM_wabaCbr.sql 2013-10-01 12:48 564
chrM_wabaCbr.txt.gz 2003-06-24 12:45 412
chrV_blastzCb1.sql 2013-10-01 12:48 1.3K
chrV_blastzCb1.txt.gz 2003-06-24 12:45 18M
chrV_blastzSelf.sql 2013-10-01 12:48 1.3K
chrV_blastzSelf.txt.gz 2003-06-24 12:46 55M
chrV_blatFugu.sql 2013-10-01 12:48 1.3K
chrV_blatFugu.txt.gz 2003-06-24 12:48 223K
chrV_cb1Chain.sql 2013-10-01 12:48 850
chrV_cb1Chain.txt.gz 2003-06-24 12:48 6.4M
chrV_cb1ChainLink.sql 2013-10-01 12:48 573
chrV_cb1ChainLink.txt.gz 2003-06-24 12:48 15M
chrV_chainSelf.sql 2013-10-01 12:48 852
chrV_chainSelf.txt.gz 2003-06-24 12:49 21M
chrV_chainSelfLink.sql 2013-10-01 12:48 575
chrV_chainSelfLink.txt.gz 2003-06-24 12:50 50M
chrV_est.sql 2013-10-01 12:48 1.3K
chrV_est.txt.gz 2003-06-24 12:51 950K
chrV_gap.sql 2013-10-01 12:48 685
chrV_gap.txt.gz 2003-06-24 12:51 33
chrV_gold.sql 2013-10-01 12:48 779
chrV_gold.txt.gz 2003-06-24 12:51 12K
chrV_mrna.sql 2013-10-01 12:48 1.3K
chrV_mrna.txt.gz 2003-06-24 12:51 20K
chrV_rmsk.sql 2013-10-01 12:48 1.0K
chrV_rmsk.txt.gz 2003-06-24 12:51 428K
chrV_wabaCbr.sql 2013-10-01 12:48 564
chrV_wabaCbr.txt.gz 2003-06-24 12:51 1.8M
chrX_blastzCb1.sql 2013-10-01 12:48 1.3K
chrX_blastzCb1.txt.gz 2003-06-24 12:52 7.2M
chrX_blastzSelf.sql 2013-10-01 12:48 1.3K
chrX_blastzSelf.txt.gz 2003-06-24 12:53 22M
chrX_blatFugu.sql 2013-10-01 12:48 1.3K
chrX_blatFugu.txt.gz 2003-06-24 12:54 310K
chrX_cb1Chain.sql 2013-10-01 12:48 850
chrX_cb1Chain.txt.gz 2003-06-24 12:54 2.2M
chrX_cb1ChainLink.sql 2013-10-01 12:48 573
chrX_cb1ChainLink.txt.gz 2003-06-24 12:54 6.3M
chrX_chainSelf.sql 2013-10-01 12:48 852
chrX_chainSelf.txt.gz 2003-06-24 12:55 11M
chrX_chainSelfLink.sql 2013-10-01 12:48 575
chrX_chainSelfLink.txt.gz 2003-06-24 12:57 21M
chrX_est.sql 2013-10-01 12:48 1.3K
chrX_est.txt.gz 2003-06-24 12:57 825K
chrX_gap.sql 2013-10-01 12:48 692
chrX_gap.txt.gz 2004-05-01 05:06 71
chrX_gold.sql 2013-10-01 12:48 779
chrX_gold.txt.gz 2003-06-24 12:57 11K
chrX_mrna.sql 2013-10-01 12:48 1.3K
chrX_mrna.txt.gz 2003-06-24 12:57 27K
chrX_rmsk.sql 2013-10-01 12:48 1.0K
chrX_rmsk.txt.gz 2003-06-24 12:58 263K
chrX_wabaCbr.sql 2013-10-01 12:48 564
chrX_wabaCbr.txt.gz 2003-06-24 12:58 1.0M
chromInfo.sql 2013-10-01 12:48 394
chromInfo.txt.gz 2003-06-24 12:58 143
description.sql 2013-10-01 12:48 342
description.txt.gz 2003-06-24 12:58 23K
development.sql 2013-10-01 12:48 342
development.txt.gz 2003-06-24 12:58 318
extFile.sql 2013-10-01 12:48 443
extFile.txt.gz 2003-06-24 12:58 159
gbCdnaInfo.sql 2013-10-01 12:48 1.5K
gbCdnaInfo.txt.gz 2004-09-28 10:04 1.8M
gcPercent.sql 2013-10-01 12:48 544
gcPercent.txt.gz 2003-06-24 12:58 26K
geneName.sql 2013-10-01 12:48 336
geneName.txt.gz 2003-06-24 12:58 101K
genomicSuperDups.sql 2006-07-05 07:02 2.5K
genomicSuperDups.txt.gz 2006-07-05 07:02 421K
grp.sql 2013-10-01 12:48 358
grp.txt.gz 2004-10-22 04:25 204
hgFindSpec.sql 2013-10-01 12:48 825
hgFindSpec.txt.gz 2005-04-23 05:28 533
history.sql 2013-10-01 12:48 499
history.txt.gz 2003-06-24 12:58 271
keyword.sql 2013-10-01 12:48 334
keyword.txt.gz 2003-06-24 12:58 4.3K
kimExpDistance.sql 2013-10-01 12:48 392
kimExpDistance.txt.gz 2003-10-30 06:58 118M
library.sql 2013-10-01 12:48 334
library.txt.gz 2003-06-24 12:58 8.3K
miRNA.sql 2013-10-01 12:48 776
miRNA.txt.gz 2004-03-20 05:05 2.1K
mrnaClone.sql 2013-10-01 12:48 338
mrnaClone.txt.gz 2003-06-24 12:58 510K
orfToGene.sql 2013-10-01 12:48 364
orfToGene.txt.gz 2003-10-09 20:19 98K
organism.sql 2013-10-01 12:48 336
organism.txt.gz 2003-06-24 12:58 65
productName.sql 2013-10-01 12:48 342
productName.txt.gz 2003-06-24 12:58 117K
refFlat.sql 2013-10-01 12:48 769
refFlat.txt.gz 2003-06-24 12:58 1.1M
refGene.sql 2013-10-01 12:48 753
refGene.txt.gz 2004-05-20 05:15 1.1M
refLink.sql 2013-10-01 12:48 802
refLink.txt.gz 2004-05-20 05:15 496K
refMrna.sql 2013-10-01 12:48 329
refMrna.txt.gz 2004-05-20 05:15 7.1M
refSeqAli.sql 2013-10-01 12:48 1.3K
refSeqAli.txt.gz 2003-06-24 12:59 1.3M
refSeqStatus.sql 2013-10-01 12:48 350
refSeqStatus.txt.gz 2004-06-23 04:28 69K
sangerBlastTab.sql 2013-10-01 12:48 808
sangerBlastTab.txt.gz 2003-10-09 20:19 18M
sangerCanonical.sql 2013-10-01 12:48 612
sangerCanonical.txt.gz 2003-10-30 06:55 340K
sangerGene.sql 2013-10-01 12:48 824
sangerGene.txt.gz 2003-10-30 06:55 1.2M
sangerIsoforms.sql 2013-10-01 12:48 405
sangerIsoforms.txt.gz 2003-10-09 20:19 102K
sangerLinks.sql 2013-10-01 12:48 419
sangerLinks.txt.gz 2003-10-30 06:55 550K
sangerPep.sql 2013-10-01 12:48 326
sangerPep.txt.gz 2003-09-25 08:55 4.8M
sangerToKim.sql 2013-10-01 12:48 375
sangerToKim.txt.gz 2003-10-09 20:19 95K
sangerToPfam.sql 2013-10-01 12:48 377
sangerToPfam.txt.gz 2004-04-17 05:03 69K
sangerToRefSeq.sql 2013-10-01 12:48 381
sangerToRefSeq.txt.gz 2003-10-09 20:19 107K
seq.sql 2013-10-01 12:48 588
seq.txt.gz 2003-06-24 12:59 2.7M
sex.sql 2013-10-01 12:48 326
sex.txt.gz 2003-06-24 12:59 140
simpleRepeat.sql 2013-10-01 12:48 1.1K
simpleRepeat.txt.gz 2003-06-24 12:59 822K
softberryGene.sql 2013-10-01 12:48 752
softberryGene.txt.gz 2003-08-29 07:24 1.0M
softberryHom.sql 2013-10-01 12:48 381
softberryHom.txt.gz 2003-08-29 07:24 352K
softberryPep.sql 2013-10-01 12:48 332
softberryPep.txt.gz 2003-08-29 07:24 4.7M
source.sql 2013-10-01 12:48 332
source.txt.gz 2003-06-24 12:59 83
tableDescriptions.sql 2008-05-18 03:15 1.2K
tableDescriptions.txt.gz 2008-05-18 03:15 6.2K
tissue.sql 2013-10-01 12:48 332
tissue.txt.gz 2003-06-24 12:59 132
trackDb.sql 2008-07-16 03:14 2.0K
trackDb.txt.gz 2008-07-16 03:14 13K
twinscan.sql 2013-10-01 12:48 755
twinscan.txt.gz 2004-05-05 05:06 958K
twinscanPep.sql 2013-10-01 12:48 337
twinscanPep.txt.gz 2004-03-24 05:08 4.2M
wabaCbr.sql 2013-10-01 12:48 825
wabaCbr.txt.gz 2003-06-24 13:02 260M