This directory contains a dump of the UCSC genome annotation
database for the Mar. 2005 v2.0 assembly (UCSC version ci2)
of the C. intestinalis genome from the US DOE Joint Genome
Institute (JGI).
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=ci2
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
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If you plan to download a large file or multiple files from this
directory, we recommend you use ftp rather than downloading the files
via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to
the directory goldenPath/ci2/database. To download multiple files,
use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
All the annotations in this directory are freely available for public use.
To view restrictions on the use of the v1.0 data, see the JGI data
release policy at http://genome.jgi-psf.org/ciona4/ciona4.download.html.
Name Last modified Size Description
Parent Directory -
all_est.sql 2016-06-05 09:30 2.1K
all_est.txt.gz 2016-06-05 09:31 41M
all_mrna.sql 2020-08-21 07:02 2.1K
all_mrna.txt.gz 2020-08-21 07:02 666K
bigFiles.sql 2024-12-08 03:26 1.4K
bigFiles.txt.gz 2024-12-08 03:26 65
chromInfo.sql 2007-03-12 09:42 1.2K
chromInfo.txt.gz 2005-09-09 11:38 35K
crisprRanges.sql 2016-10-30 06:26 1.4K
crisprRanges.txt.gz 2016-10-30 06:26 367K
crisprTargets.sql 2016-10-30 06:26 1.3K
crisprTargets.txt.gz 2016-10-30 06:26 59
ensGene.sql 2011-03-14 10:18 1.8K
ensGene.txt.gz 2011-03-14 10:18 1.3M
ensGtp.sql 2011-11-13 15:35 1.4K
ensGtp.txt.gz 2011-11-13 15:35 188K
ensPep.sql 2011-03-14 10:15 1.3K
ensPep.txt.gz 2011-03-14 10:15 3.6M
ensemblSource.sql 2011-11-13 15:39 1.3K
ensemblSource.txt.gz 2011-11-13 15:39 64K
ensemblToGeneName.sql 2011-11-13 15:37 1.3K
ensemblToGeneName.txt.gz 2011-11-13 15:37 121K
estOrientInfo.sql 2016-06-05 09:32 1.8K
estOrientInfo.txt.gz 2016-06-05 09:32 11M
gap.sql 2013-10-01 12:48 704
gap.txt.gz 2005-09-09 11:42 275K
gbDelete_tmp.sql 2013-10-01 12:48 322
gbDelete_tmp.txt.gz 2005-09-27 05:01 139K
gbLoaded.sql 2020-08-21 07:25 1.6K
gbLoaded.txt.gz 2020-08-21 07:25 111K
gc5Base.sql 2013-10-01 12:48 888
gc5Base.txt.gz 2005-09-09 11:44 710K
grp.sql 2014-03-02 03:40 1.4K
grp.txt.gz 2014-03-02 03:40 223
hgFindSpec.sql 2023-03-28 13:47 1.8K
hgFindSpec.txt.gz 2023-03-28 13:47 620
history.sql 2013-10-01 12:48 533
history.txt.gz 2005-09-09 11:44 194
intronEst.sql 2016-06-05 09:32 2.1K
intronEst.txt.gz 2016-06-05 09:32 27M
locusName.sql 2016-10-30 06:26 1.5K
locusName.txt.gz 2016-10-30 06:26 1.6M
microsat.sql 2015-08-23 12:49 1.5K
microsat.txt.gz 2015-08-23 12:49 2.1K
mrnaOrientInfo.sql 2020-08-21 07:02 1.8K
mrnaOrientInfo.txt.gz 2020-08-21 07:02 147K
pubsBingBlat.sql 2014-01-26 09:59 2.4K
pubsBingBlat.txt.gz 2014-01-26 09:59 67K
pubsBingBlatPsl.sql 2014-01-26 09:59 2.2K
pubsBingBlatPsl.txt.gz 2014-01-26 09:59 37K
pubsBlat.sql 2012-05-07 12:56 1.9K
pubsBlat.txt.gz 2012-05-07 12:56 26K
pubsBlatPsl.sql 2012-05-07 12:56 2.1K
pubsBlatPsl.txt.gz 2012-05-07 12:56 38K
refFlat.sql 2020-08-21 07:18 1.7K
refFlat.txt.gz 2020-08-21 07:18 86K
refGene.sql 2020-08-21 07:18 1.9K
refGene.txt.gz 2020-08-21 07:18 94K
refSeqAli.sql 2019-07-28 04:39 2.1K
refSeqAli.txt.gz 2019-07-28 04:39 101K
rmsk.sql 2013-10-01 12:48 1.0K
rmsk.txt.gz 2005-09-09 11:44 4.1M
simpleRepeat.sql 2013-10-01 12:48 1.1K
simpleRepeat.txt.gz 2005-09-09 11:44 1.2M
tableDescriptions.sql 2024-12-07 02:03 1.5K
tableDescriptions.txt.gz 2024-12-07 02:03 5.3K
tableList.sql 2024-12-08 03:26 1.6K
tableList.txt.gz 2024-12-08 03:26 2.5K
trackDb.sql 2023-03-28 13:47 2.1K
trackDb.txt.gz 2023-03-28 13:47 19K
xenoMrna.sql 2020-08-21 07:02 2.1K
xenoMrna.txt.gz 2020-08-21 07:02 94M
xenoRefFlat.sql 2020-08-21 07:25 1.7K
xenoRefFlat.txt.gz 2020-08-21 07:25 7.8M
xenoRefGene.sql 2020-08-21 07:25 1.9K
xenoRefGene.txt.gz 2020-08-21 07:25 8.6M
xenoRefSeqAli.sql 2020-08-21 07:25 2.1K
xenoRefSeqAli.txt.gz 2020-08-21 07:25 8.9M