This directory contains reciprocal-best netted chains for aquChr2-galGal6.

 - aquChr2.galGal6.rbest.net.gz: aquChr2-referenced recip.best net to galGal6.
 - aquChr2.galGal6.rbest.chain.gz: chains extracted from the recip.best
   net.  These can be passed to the liftOver program to translate coords
   from aquChr2 to galGal6 through the recip.best net.

 - galGal6.aquChr2.rbest.net.gz: galGal6-referenced recip.best net.
 - galGal6.aquChr2.rbest.chain.gz: recip.best "liftOver" chains.

 - axtRBestNet/aquChr2.galGal6.rbest.axt.gz reciprocal best alignments in
   AXT format

See also, description of AXT format::
    http://genome.ucsc.edu/goldenPath/help/axt.html
description of CHAIN format:
    http://genome.ucsc.edu/goldenPath/help/chain.html
description of NET format:
    http://genome.ucsc.edu/goldenPath/help/net.html

      Name                                                               Last modified      Size  Description
      Parent Directory                                                                        -   
      aquChr2.galGal6.rbest.chain.gz                                     2018-10-24 08:36   40M  
      aquChr2.galGal6.rbest.net.gz                                       2018-10-24 08:37   81M  
      axtRBestNet/                                                       2018-10-24 14:13    -   
      galGal6.aquChr2.rbest.chain.gz                                     2018-10-24 08:35   40M  
      galGal6.aquChr2.rbest.net.gz                                       2018-10-24 08:35   56M  
      md5sum.txt                                                         2018-10-24 08:37  256