This directory contains reciprocal-best netted chains for echTel2-mm39.

 - echTel2.mm39.rbest.net.gz: echTel2-referenced recip.best net to mm39.
 - echTel2.mm39.rbest.chain.gz: chains extracted from the recip.best
   net.  These can be passed to the liftOver program to translate coords
   from echTel2 to mm39 through the recip.best net.

 - mm39.echTel2.rbest.net.gz: mm39-referenced recip.best net.
 - mm39.echTel2.rbest.chain.gz: recip.best "liftOver" chains.

 - axtRBestNet/echTel2.mm39.rbest.axt.gz reciprocal best alignments in
   AXT format

See also, description of AXT format::
    http://genome.ucsc.edu/goldenPath/help/axt.html
description of CHAIN format:
    http://genome.ucsc.edu/goldenPath/help/chain.html
description of NET format:
    http://genome.ucsc.edu/goldenPath/help/net.html

      Name                                                 Last modified      Size  Description
Parent Directory - axtRBestNet/ 2021-03-15 14:54 - md5sum.txt 2020-11-25 06:10 244 mm39.echTel2.rbest.chain.gz 2020-11-25 06:09 28M echTel2.mm39.rbest.chain.gz 2020-11-25 06:09 28M mm39.echTel2.rbest.net.gz 2020-11-25 06:08 48M echTel2.mm39.rbest.net.gz 2020-11-25 06:10 53M