This directory contains reciprocal-best netted chains for mm39-manPen1.
- mm39.manPen1.rbest.net.gz: mm39-referenced recip.best net to manPen1.
- mm39.manPen1.rbest.chain.gz: chains extracted from the recip.best
net. These can be passed to the liftOver program to translate coords
from mm39 to manPen1 through the recip.best net.
- manPen1.mm39.rbest.net.gz: manPen1-referenced recip.best net.
- manPen1.mm39.rbest.chain.gz: recip.best "liftOver" chains.
- axtRBestNet/*.mm39.manPen1.net.axt.gz reciprocal best alignments in
AXT format
See also, description of AXT format::
http://genome.ucsc.edu/goldenPath/help/axt.html
description of CHAIN format:
http://genome.ucsc.edu/goldenPath/help/chain.html
description of NET format:
http://genome.ucsc.edu/goldenPath/help/net.html
Name Last modified Size Description
Parent Directory -
mm39.manPen1.rbest.net.gz 2020-11-24 00:26 84M
mm39.manPen1.rbest.chain.gz 2020-11-24 00:26 54M
md5sum.txt 2020-11-24 00:26 244
manPen1.mm39.rbest.net.gz 2020-11-24 00:24 109M
manPen1.mm39.rbest.chain.gz 2020-11-24 00:25 54M
axtRBestNet/ 2021-03-15 15:26 -