This directory contains a dump of the annotation database for the Release 3.1 assembly of the Drosophila melanogaster genome (dm1, Jan. 2003). The annotations were generated by UCSC and collaborators worldwide. Files included in this directory (updated nightly): - *.sql files: the MySQL commands used to create the tables. To see descriptions of the tables underlying Genome Browser annotation tracks, select the table in the Table Browser: http://genome.ucsc.edu/cgi-bin/hgTables?db=dm1 and click the "describe table schema" button. There is also a "view table schema" link on the configuration page for each track. - *.txt.gz files: the database tables in a tab-delimited format compressed with gzip. -------------------------------------------------------------- If you plan to download a large file or multiple files from this directory, we recommend you use ftp rather than downloading the files via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to the directory goldenPath/dm1/database/. To download multiple files, use the "mget" command: mget <filename1> <filename2> ... - or - mget -a (to download all the files in the directory) All the tables in this directory are freely available for public use.
Name Last modified Size Description
Parent Directory - CeBlastTab.sql 2008-09-29 03:07 1.6K CeBlastTab.txt.gz 2008-09-29 03:07 298K MmBlastTab.sql 2008-09-29 03:07 1.6K MmBlastTab.txt.gz 2008-09-29 03:07 292K a_gambiae_myp2a.sql 2013-10-01 12:48 664 a_gambiae_myp2a.txt.gz 2004-10-05 20:06 673K all_est.sql 2016-06-05 09:58 2.1K all_est.txt.gz 2016-06-05 09:58 25M all_mrna.sql 2020-08-21 12:04 2.1K all_mrna.txt.gz 2020-08-21 12:04 3.7M anophelesEcores.sql 2013-10-01 12:48 956 anophelesEcores.txt.gz 2003-11-18 10:10 1.0M arbExpDistance.sql 2013-10-01 12:48 390 arbExpDistance.txt.gz 2004-08-16 09:30 28M augustusGene.sql 2015-07-26 12:07 1.9K augustusGene.txt.gz 2015-07-26 12:07 737K bdgpBlastTab.sql 2013-10-01 12:48 802 bdgpBlastTab.txt.gz 2004-07-05 10:51 16M bdgpCanonical.sql 2013-10-01 12:48 606 bdgpCanonical.txt.gz 2004-07-05 10:52 231K bdgpExprLink.sql 2013-10-01 12:48 689 bdgpExprLink.txt.gz 2004-07-05 10:52 41K bdgpGene.sql 2013-10-01 12:48 703 bdgpGene.txt.gz 2005-01-09 04:35 764K bdgpGeneInfo.sql 2013-10-01 12:48 548 bdgpGeneInfo.txt.gz 2004-07-05 10:52 117K bdgpGenePep.sql 2013-10-01 12:48 328 bdgpGenePep.txt.gz 2004-07-05 10:52 4.2M bdgpIsoforms.sql 2013-10-01 12:48 399 bdgpIsoforms.txt.gz 2004-07-05 10:52 80K bdgpNear.sql 2013-10-01 12:48 353 bdgpNear.txt.gz 2003-10-30 11:51 193K bdgpNonCoding.sql 2013-10-01 12:48 756 bdgpNonCoding.txt.gz 2005-01-09 04:35 37K bdgpNonCodingInfo.sql 2013-10-01 12:48 498 bdgpNonCodingInfo.txt.gz 2004-07-05 10:51 17K bdgpSwissProt.sql 2013-10-01 12:48 684 bdgpSwissProt.txt.gz 2004-07-05 10:52 330K bdgpToCanonical.sql 2013-10-01 12:48 374 bdgpToCanonical.txt.gz 2004-07-05 10:52 74K bdgpToLocusLink.sql 2013-10-01 12:48 383 bdgpToLocusLink.txt.gz 2003-11-18 10:10 86K bdgpToPfam.sql 2013-10-01 12:48 364 bdgpToPfam.txt.gz 2004-07-05 10:52 66K bdgpToRefSeq.sql 2013-10-01 12:48 375 bdgpToRefSeq.txt.gz 2006-01-27 06:10 100K bigFiles.sql 2024-12-29 03:26 1.4K bigFiles.txt.gz 2024-12-29 03:26 33 blastFBPep00.sql 2013-10-01 12:48 330 blastFBPep00.txt.gz 2004-08-24 06:01 4.2M blastFBRef00.sql 2013-10-01 12:48 484 blastFBRef00.txt.gz 2005-04-29 04:19 240K blastHg16KG.sql 2013-10-01 12:48 1.3K blastHg16KG.txt.gz 2004-09-28 10:14 1.3M chr2L_blatFugu.sql 2013-10-01 12:48 1.3K chr2L_blatFugu.txt.gz 2003-10-30 11:51 327K chr2L_chainAnoGam1.sql 2013-10-01 12:48 858 chr2L_chainAnoGam1.txt.gz 2004-08-16 09:32 922K chr2L_chainAnoGam1Link.sql 2013-10-01 12:48 581 chr2L_chainAnoGam1Link.txt.gz 2004-08-16 09:32 3.2M chr2L_chainDp2.sql 2013-10-01 12:48 850 chr2L_chainDp2.txt.gz 2004-09-08 05:19 735K chr2L_chainDp2Link.sql 2013-10-01 12:48 573 chr2L_chainDp2Link.txt.gz 2004-09-08 05:19 5.5M chr2L_chainDroYak1.sql 2013-10-01 12:48 858 chr2L_chainDroYak1.txt.gz 2004-08-16 09:32 830K chr2L_chainDroYak1Link.sql 2013-10-01 12:48 581 chr2L_chainDroYak1Link.txt.gz 2004-08-16 09:32 4.5M chr2L_est.sql 2016-06-05 09:58 2.1K chr2L_est.txt.gz 2016-06-05 09:58 4.5M chr2L_gap.sql 2013-10-01 12:48 704 chr2L_gap.txt.gz 2003-10-30 11:48 102 chr2L_intronEst.sql 2016-06-05 09:58 2.1K chr2L_intronEst.txt.gz 2016-06-05 09:58 1.9M chr2L_mrna.sql 2020-08-21 11:49 2.1K chr2L_mrna.txt.gz 2020-08-21 11:49 637K chr2L_rmsk.sql 2013-10-01 12:48 1.0K chr2L_rmsk.txt.gz 2003-10-30 11:51 245K chr2R_blatFugu.sql 2013-10-01 12:48 1.3K chr2R_blatFugu.txt.gz 2003-10-30 11:51 387K chr2R_chainAnoGam1.sql 2013-10-01 12:48 858 chr2R_chainAnoGam1.txt.gz 2004-08-16 09:32 412K chr2R_chainAnoGam1Link.sql 2013-10-01 12:48 581 chr2R_chainAnoGam1Link.txt.gz 2004-08-16 09:32 2.3M chr2R_chainDp2.sql 2013-10-01 12:48 850 chr2R_chainDp2.txt.gz 2004-09-08 05:19 422K chr2R_chainDp2Link.sql 2013-10-01 12:48 573 chr2R_chainDp2Link.txt.gz 2004-09-08 05:18 4.6M chr2R_chainDroYak1.sql 2013-10-01 12:48 858 chr2R_chainDroYak1.txt.gz 2004-08-16 09:32 952K chr2R_chainDroYak1Link.sql 2013-10-01 12:48 581 chr2R_chainDroYak1Link.txt.gz 2004-08-16 09:32 4.9M chr2R_est.sql 2016-06-05 09:58 2.1K chr2R_est.txt.gz 2016-06-05 09:58 4.6M chr2R_gap.sql 2013-10-01 12:48 704 chr2R_gap.txt.gz 2003-10-30 11:48 134 chr2R_intronEst.sql 2016-06-05 09:58 2.1K chr2R_intronEst.txt.gz 2016-06-05 09:58 2.1M chr2R_mrna.sql 2020-08-21 11:49 2.1K chr2R_mrna.txt.gz 2020-08-21 11:49 744K chr2R_rmsk.sql 2013-10-01 12:48 1.0K chr2R_rmsk.txt.gz 2003-10-30 11:51 237K chr2h_blatFugu.sql 2013-10-01 12:48 1.3K chr2h_blatFugu.txt.gz 2003-10-30 11:51 3.7K chr2h_chainAnoGam1.sql 2013-10-01 12:48 858 chr2h_chainAnoGam1.txt.gz 2004-08-16 09:32 13K chr2h_chainAnoGam1Link.sql 2013-10-01 12:48 581 chr2h_chainAnoGam1Link.txt.gz 2004-08-16 09:32 148K chr2h_chainDp2.sql 2013-10-01 12:48 850 chr2h_chainDp2.txt.gz 2004-09-08 05:18 20K chr2h_chainDp2Link.sql 2013-10-01 12:48 573 chr2h_chainDp2Link.txt.gz 2004-09-08 05:19 62K chr2h_chainDroYak1.sql 2013-10-01 12:48 858 chr2h_chainDroYak1.txt.gz 2004-08-16 09:32 778K chr2h_chainDroYak1Link.sql 2013-10-01 12:48 581 chr2h_chainDroYak1Link.txt.gz 2004-08-16 09:32 2.9M chr2h_est.sql 2016-06-05 09:58 2.1K chr2h_est.txt.gz 2016-06-05 09:58 139K chr2h_gap.sql 2013-10-01 12:48 704 chr2h_gap.txt.gz 2003-10-30 11:48 661 chr2h_intronEst.sql 2016-06-05 09:58 2.1K chr2h_intronEst.txt.gz 2016-06-05 09:58 78K chr2h_mrna.sql 2016-10-02 05:55 2.1K chr2h_mrna.txt.gz 2016-10-02 05:55 28K chr2h_rmsk.sql 2013-10-01 12:48 1.0K chr2h_rmsk.txt.gz 2003-10-30 11:51 62K chr3L_blatFugu.sql 2013-10-01 12:48 1.3K chr3L_blatFugu.txt.gz 2003-10-30 11:51 335K chr3L_chainAnoGam1.sql 2013-10-01 12:48 858 chr3L_chainAnoGam1.txt.gz 2004-08-16 09:32 407K chr3L_chainAnoGam1Link.sql 2013-10-01 12:48 581 chr3L_chainAnoGam1Link.txt.gz 2004-08-16 09:32 2.2M chr3L_chainDp2.sql 2013-10-01 12:48 850 chr3L_chainDp2.txt.gz 2004-09-08 05:19 542K chr3L_chainDp2Link.sql 2013-10-01 12:48 573 chr3L_chainDp2Link.txt.gz 2004-09-08 05:19 5.4M chr3L_chainDroYak1.sql 2013-10-01 12:48 858 chr3L_chainDroYak1.txt.gz 2004-08-16 09:33 866K chr3L_chainDroYak1Link.sql 2013-10-01 12:48 581 chr3L_chainDroYak1Link.txt.gz 2004-08-16 09:33 5.2M chr3L_est.sql 2016-06-05 09:58 2.1K chr3L_est.txt.gz 2016-06-05 09:58 4.8M chr3L_gap.sql 2013-10-01 12:48 704 chr3L_gap.txt.gz 2003-10-30 11:48 151 chr3L_intronEst.sql 2016-06-05 09:58 2.1K chr3L_intronEst.txt.gz 2016-06-05 09:58 2.0M chr3L_mrna.sql 2020-03-01 05:51 2.1K chr3L_mrna.txt.gz 2020-03-01 05:51 703K chr3L_rmsk.sql 2013-10-01 12:48 1.0K chr3L_rmsk.txt.gz 2003-10-30 11:51 281K chr3R_blatFugu.sql 2013-10-01 12:48 1.3K chr3R_blatFugu.txt.gz 2003-10-30 11:51 467K chr3R_chainAnoGam1.sql 2013-10-01 12:48 858 chr3R_chainAnoGam1.txt.gz 2004-08-16 09:33 483K chr3R_chainAnoGam1Link.sql 2013-10-01 12:48 581 chr3R_chainAnoGam1Link.txt.gz 2004-08-16 09:33 2.9M chr3R_chainDp2.sql 2013-10-01 12:48 850 chr3R_chainDp2.txt.gz 2004-09-08 05:18 541K chr3R_chainDp2Link.sql 2013-10-01 12:48 573 chr3R_chainDp2Link.txt.gz 2004-09-08 05:18 6.8M chr3R_chainDroYak1.sql 2013-10-01 12:48 858 chr3R_chainDroYak1.txt.gz 2004-08-16 09:33 755K chr3R_chainDroYak1Link.sql 2013-10-01 12:48 581 chr3R_chainDroYak1Link.txt.gz 2004-08-16 09:33 5.3M chr3R_est.sql 2016-06-05 09:58 2.1K chr3R_est.txt.gz 2016-06-05 09:58 5.8M chr3R_gap.sql 2013-10-01 12:48 704 chr3R_gap.txt.gz 2003-10-30 11:48 34 chr3R_intronEst.sql 2016-06-05 09:58 2.1K chr3R_intronEst.txt.gz 2016-06-05 09:58 2.7M chr3R_mrna.sql 2020-03-01 05:51 2.1K chr3R_mrna.txt.gz 2020-03-01 05:51 891K chr3R_rmsk.sql 2013-10-01 12:48 1.0K chr3R_rmsk.txt.gz 2003-10-30 11:52 303K chr3h_blatFugu.sql 2013-10-01 12:48 1.3K chr3h_blatFugu.txt.gz 2003-10-30 11:52 3.1K chr3h_chainAnoGam1.sql 2013-10-01 12:48 858 chr3h_chainAnoGam1.txt.gz 2004-08-16 09:33 12K chr3h_chainAnoGam1Link.sql 2013-10-01 12:48 581 chr3h_chainAnoGam1Link.txt.gz 2004-08-16 09:33 154K chr3h_chainDp2.sql 2013-10-01 12:48 850 chr3h_chainDp2.txt.gz 2004-09-08 05:19 24K chr3h_chainDp2Link.sql 2013-10-01 12:48 573 chr3h_chainDp2Link.txt.gz 2004-09-08 05:19 78K chr3h_chainDroYak1.sql 2013-10-01 12:48 858 chr3h_chainDroYak1.txt.gz 2004-08-16 09:33 817K chr3h_chainDroYak1Link.sql 2013-10-01 12:48 581 chr3h_chainDroYak1Link.txt.gz 2004-08-16 09:33 3.0M chr3h_est.sql 2016-06-05 09:58 2.1K chr3h_est.txt.gz 2016-06-05 09:58 109K chr3h_gap.sql 2013-10-01 12:48 704 chr3h_gap.txt.gz 2003-10-30 11:48 733 chr3h_intronEst.sql 2016-06-05 09:58 2.1K chr3h_intronEst.txt.gz 2016-06-05 09:58 35K chr3h_mrna.sql 2016-10-02 05:55 2.1K chr3h_mrna.txt.gz 2016-10-02 05:55 26K chr3h_rmsk.sql 2013-10-01 12:48 1.0K chr3h_rmsk.txt.gz 2003-10-30 11:52 68K chr4_blatFugu.sql 2013-10-01 12:48 1.3K chr4_blatFugu.txt.gz 2003-10-30 11:52 32K chr4_chainAnoGam1.sql 2013-10-01 12:48 856 chr4_chainAnoGam1.txt.gz 2004-08-16 09:33 17K chr4_chainAnoGam1Link.sql 2013-10-01 12:48 579 chr4_chainAnoGam1Link.txt.gz 2004-08-16 09:33 72K chr4_chainDp2.sql 2013-10-01 12:48 848 chr4_chainDp2.txt.gz 2004-09-08 05:18 18K chr4_chainDp2Link.sql 2013-10-01 12:48 571 chr4_chainDp2Link.txt.gz 2004-09-08 05:18 94K chr4_chainDroYak1.sql 2013-10-01 12:48 856 chr4_chainDroYak1.txt.gz 2004-08-16 09:33 160K chr4_chainDroYak1Link.sql 2013-10-01 12:48 579 chr4_chainDroYak1Link.txt.gz 2004-08-16 09:33 689K chr4_est.sql 2016-06-05 09:58 2.1K chr4_est.txt.gz 2016-06-05 09:58 363K chr4_gap.sql 2013-10-01 12:48 702 chr4_gap.txt.gz 2003-10-30 11:48 70 chr4_intronEst.sql 2016-06-05 09:58 2.1K chr4_intronEst.txt.gz 2016-06-05 09:58 169K chr4_mrna.sql 2020-03-01 05:51 2.1K chr4_mrna.txt.gz 2020-03-01 05:51 39K chr4_rmsk.sql 2013-10-01 12:48 1.0K chr4_rmsk.txt.gz 2003-10-30 11:52 40K chrU_blatFugu.sql 2013-10-01 12:48 1.3K chrU_blatFugu.txt.gz 2003-10-30 11:52 7.1K chrU_chainAnoGam1.sql 2013-10-01 12:48 856 chrU_chainAnoGam1.txt.gz 2004-08-16 09:33 60K chrU_chainAnoGam1Link.sql 2013-10-01 12:48 579 chrU_chainAnoGam1Link.txt.gz 2004-08-16 09:33 705K chrU_chainDp2.sql 2013-10-01 12:48 848 chrU_chainDp2.txt.gz 2004-09-08 05:19 53K chrU_chainDp2Link.sql 2013-10-01 12:48 571 chrU_chainDp2Link.txt.gz 2004-09-08 05:19 220K chrU_chainDroYak1.sql 2013-10-01 12:48 856 chrU_chainDroYak1.txt.gz 2004-08-16 09:33 2.6M chrU_chainDroYak1Link.sql 2013-10-01 12:48 579 chrU_chainDroYak1Link.txt.gz 2004-08-16 09:33 9.9M chrU_est.sql 2016-06-05 09:58 2.1K chrU_est.txt.gz 2016-06-05 09:58 317K chrU_gap.sql 2013-10-01 12:48 702 chrU_gap.txt.gz 2003-10-30 11:48 4.9K chrU_intronEst.sql 2016-06-05 09:58 2.1K chrU_intronEst.txt.gz 2016-06-05 09:58 40K chrU_mrna.sql 2016-10-30 06:44 2.1K chrU_mrna.txt.gz 2016-10-30 06:44 89K chrU_rmsk.sql 2013-10-01 12:48 1.0K chrU_rmsk.txt.gz 2003-10-30 11:52 232K chrX_blatFugu.sql 2013-10-01 12:48 1.3K chrX_blatFugu.txt.gz 2003-10-30 11:52 322K chrX_chainAnoGam1.sql 2013-10-01 12:48 856 chrX_chainAnoGam1.txt.gz 2004-08-16 09:33 419K chrX_chainAnoGam1Link.sql 2013-10-01 12:48 579 chrX_chainAnoGam1Link.txt.gz 2004-08-16 09:33 2.6M chrX_chainDp2.sql 2013-10-01 12:48 848 chrX_chainDp2.txt.gz 2004-09-08 05:19 610K chrX_chainDp2Link.sql 2013-10-01 12:48 571 chrX_chainDp2Link.txt.gz 2004-09-08 05:19 4.3M chrX_chainDroYak1.sql 2013-10-01 12:48 856 chrX_chainDroYak1.txt.gz 2004-08-16 09:33 840K chrX_chainDroYak1Link.sql 2013-10-01 12:48 579 chrX_chainDroYak1Link.txt.gz 2004-08-16 09:33 4.7M chrX_est.sql 2016-06-05 09:58 2.1K chrX_est.txt.gz 2016-06-05 09:58 4.0M chrX_gap.sql 2013-10-01 12:48 702 chrX_gap.txt.gz 2003-10-30 11:48 238 chrX_intronEst.sql 2016-06-05 09:58 2.1K chrX_intronEst.txt.gz 2016-06-05 09:58 1.5M chrX_mrna.sql 2020-05-07 21:01 2.1K chrX_mrna.txt.gz 2020-05-07 21:01 588K chrX_rmsk.sql 2013-10-01 12:48 1.0K chrX_rmsk.txt.gz 2003-10-30 11:52 409K chrXh_blatFugu.sql 2013-10-01 12:48 1.3K chrXh_blatFugu.txt.gz 2003-10-30 11:52 2.1K chrXh_chainAnoGam1.sql 2013-10-01 12:48 858 chrXh_chainAnoGam1.txt.gz 2004-08-16 09:33 2.1K chrXh_chainAnoGam1Link.sql 2013-10-01 12:48 581 chrXh_chainAnoGam1Link.txt.gz 2004-08-16 09:33 14K chrXh_chainDp2.sql 2013-10-01 12:48 850 chrXh_chainDp2.txt.gz 2004-09-08 05:18 5.2K chrXh_chainDp2Link.sql 2013-10-01 12:48 573 chrXh_chainDp2Link.txt.gz 2004-09-08 05:18 32K chrXh_chainDroYak1.sql 2013-10-01 12:48 858 chrXh_chainDroYak1.txt.gz 2004-08-16 09:33 43K chrXh_chainDroYak1Link.sql 2013-10-01 12:48 581 chrXh_chainDroYak1Link.txt.gz 2004-08-16 09:33 160K chrXh_est.sql 2016-06-05 09:58 2.1K chrXh_est.txt.gz 2016-06-05 09:58 55K chrXh_gap.sql 2013-10-01 12:48 704 chrXh_gap.txt.gz 2003-10-30 11:48 175 chrXh_intronEst.sql 2016-06-05 09:58 2.1K chrXh_intronEst.txt.gz 2016-06-05 09:58 14K chrXh_mrna.sql 2016-10-02 05:55 2.1K chrXh_mrna.txt.gz 2016-10-02 05:55 7.2K chrXh_rmsk.sql 2013-10-01 12:48 1.0K chrXh_rmsk.txt.gz 2003-10-30 11:52 9.9K chrYh_blatFugu.sql 2013-10-01 12:48 1.3K chrYh_blatFugu.txt.gz 2003-10-30 11:52 4.3K chrYh_chainAnoGam1.sql 2013-10-01 12:48 858 chrYh_chainAnoGam1.txt.gz 2004-08-16 09:33 2.0K chrYh_chainAnoGam1Link.sql 2013-10-01 12:48 581 chrYh_chainAnoGam1Link.txt.gz 2004-08-16 09:33 29K chrYh_chainDp2.sql 2013-10-01 12:48 850 chrYh_chainDp2.txt.gz 2004-09-08 05:19 4.7K chrYh_chainDp2Link.sql 2013-10-01 12:48 573 chrYh_chainDp2Link.txt.gz 2004-09-08 05:19 16K chrYh_chainDroYak1.sql 2013-10-01 12:48 858 chrYh_chainDroYak1.txt.gz 2004-08-16 09:33 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trackDb.sql 2023-03-28 13:48 2.1K trackDb.txt.gz 2023-03-28 13:48 22K twinscan.sql 2013-10-01 12:48 1.0K twinscan.txt.gz 2004-12-22 16:20 691K twinscanPep.sql 2013-10-01 12:48 328 twinscanPep.txt.gz 2004-12-22 16:20 3.9M xenoMrna.sql 2016-02-21 13:26 2.3K xenoMrna.txt.gz 2016-02-21 13:26 69M xenoRefFlat.sql 2020-08-21 12:31 1.7K xenoRefFlat.txt.gz 2020-08-21 12:31 2.3M xenoRefGene.sql 2020-08-21 12:31 1.9K xenoRefGene.txt.gz 2020-08-21 12:31 2.5M xenoRefSeqAli.sql 2020-08-21 12:31 2.1K xenoRefSeqAli.txt.gz 2020-08-21 12:31 2.4M