This directory contains zipped multiple alignments of the following
assemblies to the D. melanogaster genome (dm1, Jan. 2003): 

- D. yakuba (droYak1, Apr. 2004) 
- D. pseudoobscura (dp2, Aug. 2003)
- A. gambiae (anoGam1, Feb. 2003) 

Each chr*.maf.gz file contains all the alignments to that particular 
D. melanogaster chromosome.  

The droYak1, dp2, and anoGam1 directories contain gzipped files containing 
the pairwise (blastz) alignments used in the multiple alignment.

For a description of the multiple alignment format (MAF), see

If you plan to download a large file or multiple files from this 
directory, we recommend you use ftp rather than downloading the files 
via our website. To do so, ftp to, then go to 
the directory goldenPath/dm1/multizDroYak1Dp2AnoGam1/. To download 
multiple files, use the "mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory) 

All the tables in this directory are freely available for public use. 
      Name                    Last modified      Size  Description
Parent Directory - chr2L.maf.gz 2004-10-05 15:38 20M chr2R.maf.gz 2004-10-05 15:39 18M chr2h.maf.gz 2004-10-05 15:39 553K chr3L.maf.gz 2004-10-05 15:40 21M chr3R.maf.gz 2004-10-05 15:40 25M chr3h.maf.gz 2004-10-05 15:40 569K chr4.maf.gz 2004-10-05 15:40 785K chrU.maf.gz 2004-10-05 15:40 1.9M chrX.maf.gz 2004-10-05 15:41 19M chrXh.maf.gz 2004-10-05 15:41 210K chrYh.maf.gz 2004-10-05 15:41 95K md5sum.txt 2004-10-05 15:44 514