This directory contains the Dec. 2008 (NHGRI/GTB V17e/felCat4) assembly of the cat genome (catChrV17e, NHGRI/Genome Technology Branch (NCBI project 10703, accession ACBE0100000)), as well as repeat annotations and GenBank sequences. This assembly was produced by the Agencourt Bioscience Corporation and Hill's Pet Nutrition, Inc.. The mitochondrial genome was sequenced by Laboratory of Genomic Diversity. For more information on the cat genome, see the project website: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&cmd=ShowDetailView&TermToSearch=10703 http://www.beckmangenomics.com/ http://www.hillspet.com/ http://home.ncifcrf.gov/ccr/lgd/comparative_genome/catgenome/index_n.asp Files included in this directory (updated nightly): - *.sql files: the MySQL commands used to create the tables - *.txt.gz files: the database tables in a tab-delimited format compressed with gzip. To see descriptions of the tables underlying Genome Browser annotation tracks, select the table in the Table Browser: http://genome.ucsc.edu/cgi-bin/hgTables?db=felCat4 and click the "describe table schema" button. There is also a "view table schema" link on the configuration page for each track. ------------------------------------------------------------------ If you plan to download a large file or multiple files from this directory, we recommend that you use ftp rather than downloading the files via our website. To do so, ftp to hgdownload.cse.ucsc.edu [username: anonymous, password: your email address], then cd to the directory goldenPath/felCat4/database/. To download multiple files, use the "mget" command: mget <filename1> <filename2> ... - or - mget -a (to download all the files in the directory) All the files and tables in this directory are freely usable for any purpose.
Name Last modified Size Description
Parent Directory - chainHg19Link.sql 2010-07-30 14:32 1.5K chainHg19Link.txt.gz 2010-07-30 14:34 427M chainMonDom5Link.sql 2010-07-30 14:38 1.5K chainMonDom5Link.txt.gz 2010-07-30 14:38 161M netAilMel1.sql 2010-07-30 14:40 2.0K netAilMel1.txt.gz 2010-07-30 14:40 58M chainCanFam2Link.sql 2010-07-30 14:41 1.5K chainCanFam2Link.txt.gz 2010-07-30 14:43 691M cpgIslandExt.sql 2010-07-30 14:51 1.6K cpgIslandExt.txt.gz 2010-07-30 14:52 1.2M ctgPos2.sql 2010-07-30 14:53 1.5K ctgPos2.txt.gz 2010-07-30 14:53 6.8K simpleRepeat.sql 2010-07-30 14:53 1.9K simpleRepeat.txt.gz 2010-07-30 14:53 18M chromInfo.sql 2010-07-30 14:53 1.3K chromInfo.txt.gz 2010-07-30 14:53 513K chainMm9.sql 2010-07-30 14:53 1.6K chainMm9.txt.gz 2010-07-30 14:53 32M chainAilMel1.sql 2010-07-30 14:54 1.6K chainAilMel1.txt.gz 2010-07-30 14:54 119M chainHg19.sql 2010-07-30 14:55 1.6K chainHg19.txt.gz 2010-07-30 14:55 39M netHg19.sql 2010-07-30 14:55 2.0K netHg19.txt.gz 2010-07-30 14:56 60M gc5Base.sql 2010-07-30 14:56 1.7K gc5Base.txt.gz 2010-07-30 14:57 13M chainMonDom5.sql 2010-07-30 14:57 1.6K chainMonDom5.txt.gz 2010-07-30 14:57 27M history.sql 2010-07-30 14:57 1.5K history.txt.gz 2010-07-30 14:57 558 netCanFam2.sql 2010-07-30 14:58 2.0K netCanFam2.txt.gz 2010-07-30 14:58 61M chainMm9Link.sql 2010-07-30 14:59 1.5K chainMm9Link.txt.gz 2010-07-30 15:00 317M chainAilMel1Link.sql 2010-07-30 15:03 1.5K chainAilMel1Link.txt.gz 2010-07-30 15:06 703M netMm9.sql 2010-07-30 15:12 2.0K netMm9.txt.gz 2010-07-30 15:13 52M chainCanFam2.sql 2010-07-30 15:13 1.6K chainCanFam2.txt.gz 2010-07-30 15:13 99M netMonDom5.sql 2010-07-30 15:14 2.0K netMonDom5.txt.gz 2010-07-30 15:14 15M nestedRepeats.sql 2010-07-30 15:15 1.9K nestedRepeats.txt.gz 2010-07-30 15:15 11M gap.sql 2010-07-30 15:15 1.5K gap.txt.gz 2010-07-30 15:15 6.4M rmsk.sql 2010-07-30 15:15 1.8K rmsk.txt.gz 2010-07-30 15:15 101M gold.sql 2010-10-24 14:29 1.6K gold.txt.gz 2010-10-24 14:29 9.6M nscanGene.sql 2010-11-07 15:10 1.9K nscanGene.txt.gz 2010-11-07 15:10 1.8M nscanPep.sql 2010-11-07 15:10 1.3K nscanPep.txt.gz 2010-11-07 15:10 5.0M blastHg18KG.sql 2011-07-17 08:58 2.1K blastHg18KG.txt.gz 2011-07-17 08:58 2.8M phyloP6way.sql 2011-08-07 08:52 1.7K phyloP6way.txt.gz 2011-08-07 08:52 64M multiz6wayFrames.sql 2011-08-07 08:53 1.7K multiz6wayFrames.txt.gz 2011-08-07 08:53 9.2M extFile.sql 2011-08-07 08:53 1.4K extFile.txt.gz 2011-08-07 08:53 80 phastConsElements6way.sql 2011-08-07 08:53 1.5K phastConsElements6way.txt.gz 2011-08-07 08:53 10M multiz6way.sql 2011-08-07 08:53 1.5K multiz6way.txt.gz 2011-08-07 08:53 88M phastCons6way.sql 2011-08-07 08:54 1.7K phastCons6way.txt.gz 2011-08-07 08:54 62M multiz6waySummary.sql 2011-08-07 08:54 1.5K multiz6waySummary.txt.gz 2011-08-07 08:54 12M tRNAs.sql 2012-04-23 00:03 1.7K tRNAs.txt.gz 2012-04-23 00:03 85K grp.sql 2014-03-02 03:40 1.3K grp.txt.gz 2014-03-02 03:40 208 cpgIslandExtUnmasked.sql 2014-06-01 12:58 1.7K cpgIslandExtUnmasked.txt.gz 2014-06-01 12:58 1.4M augustusGene.sql 2015-07-26 13:23 1.9K augustusGene.txt.gz 2015-07-26 13:23 1.9M microsat.sql 2015-08-23 16:18 1.5K microsat.txt.gz 2015-08-23 16:18 956K xenoMrna.sql 2016-02-21 15:39 2.1K xenoMrna.txt.gz 2016-02-21 15:40 296M all_est.sql 2016-05-15 08:37 2.1K all_est.txt.gz 2016-05-15 08:37 40K estOrientInfo.sql 2016-05-15 08:37 1.8K estOrientInfo.txt.gz 2016-05-15 08:37 14K intronEst.sql 2016-05-15 08:37 2.1K intronEst.txt.gz 2016-05-15 08:37 18K all_mrna.sql 2020-08-21 18:01 2.1K all_mrna.txt.gz 2020-08-21 18:01 229K refGene.sql 2020-08-21 18:06 1.9K refGene.txt.gz 2020-08-21 18:06 38K refFlat.sql 2020-08-21 18:06 1.7K refFlat.txt.gz 2020-08-21 18:06 33K xenoRefGene.sql 2020-08-21 18:06 2.0K xenoRefGene.txt.gz 2020-08-21 18:06 36M xenoRefFlat.sql 2020-08-21 18:06 1.7K xenoRefFlat.txt.gz 2020-08-21 18:06 33M mrnaOrientInfo.sql 2020-08-21 18:06 1.8K mrnaOrientInfo.txt.gz 2020-08-21 18:06 55K refSeqAli.sql 2020-08-21 18:10 2.1K refSeqAli.txt.gz 2020-08-21 18:10 40K xenoRefSeqAli.sql 2020-08-21 18:10 2.1K xenoRefSeqAli.txt.gz 2020-08-21 18:10 36M gbLoaded.sql 2020-08-21 18:23 1.6K gbLoaded.txt.gz 2020-08-21 18:23 43K trackDb.sql 2023-03-28 13:49 2.1K trackDb.txt.gz 2023-03-28 13:49 38K hgFindSpec.sql 2023-03-28 13:49 1.8K hgFindSpec.txt.gz 2023-03-28 13:49 768 tableDescriptions.sql 2024-10-05 02:03 1.5K tableDescriptions.txt.gz 2024-10-05 02:03 6.2K tableList.sql 2024-10-06 03:36 1.6K tableList.txt.gz 2024-10-06 03:36 3.6K bigFiles.sql 2024-10-06 03:36 1.4K bigFiles.txt.gz 2024-10-06 03:36 33