This directory contains reciprocal-best netted chains for fr3-danRer10.

 - fr3.danRer10.rbest.net.gz: fr3-referenced recip.best net to danRer10.
 - fr3.danRer10.rbest.chain.gz: chains extracted from the recip.best
   net.  These can be passed to the liftOver program to translate coords
   from fr3 to danRer10 through the recip.best net.

 - danRer10.fr3.rbest.net.gz: danRer10-referenced recip.best net.
 - danRer10.fr3.rbest.chain.gz: recip.best "liftOver" chains.

 - axtRBestNet/fr3.danRer10.rbest.axt.gz reciprocal best alignments in
   AXT format

See also, description of AXT format::
    http://genome.ucsc.edu/goldenPath/help/axt.html
description of CHAIN format:
    http://genome.ucsc.edu/goldenPath/help/chain.html
description of NET format:
    http://genome.ucsc.edu/goldenPath/help/net.html

      Name                        Last modified      Size  Description
      Parent Directory                                 -   
      axtRBestNet/                2017-02-10 11:18    -   
      md5sum.txt                  2017-02-10 08:17  244   
      fr3.danRer10.rbest.net.gz   2017-02-10 08:17  9.7M  
      fr3.danRer10.rbest.chain.gz 2017-02-10 08:17  6.2M  
      danRer10.fr3.rbest.chain.gz 2017-02-10 08:16  6.2M  
      danRer10.fr3.rbest.net.gz   2017-02-10 08:16  9.9M