This directory contains a dump of the UCSC genome annotation database for the
    Aug. 2019 (Kamilah_GGO_v0/gorGor6) assembly of the gorilla genome
    (gorGor6, University of Washington) .

The annotations were generated by UCSC and collaborators worldwide.

For more information about this assembly, please note the NCBI resources:
    https://www.ncbi.nlm.nih.gov/genome/2156
    https://www.ncbi.nlm.nih.gov/genome/assembly/4439481
    https://www.ncbi.nlm.nih.gov/bioproject/369439
    https://www.ncbi.nlm.nih.gov/biosample/SAMN11078986

Files included in this directory (updated nightly):

  - *.sql files:  the MySQL commands used to create the tables

  - *.txt.gz files: the database tables in a tab-delimited format
    compressed with gzip.

To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
  http://genome.ucsc.edu/cgi-bin/hgTables?db=gorGor6
and click the "describe table schema" button.  There is also a "view
table schema" link on the configuration page for each track.

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If you plan to download a large file or multiple files from this
directory, we recommend you use ftp rather than downloading the files
via our website. To do so, ftp to hgdownload.soe.ucsc.edu, then go to
the directory goldenPath/gorGor6/database/. To download multiple
files, use the "mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory)

Alternate methods to ftp access.

Using an rsync command to download the entire directory:
    rsync -avzP rsync://hgdownload.soe.ucsc.edu/goldenPath/gorGor6/database/ .
For a single file, e.g. gc5Base.txt.gz
    rsync -avzP 
        rsync://hgdownload.soe.ucsc.edu/goldenPath/gorGor6/database/gc5Base.txt.gz .

Or with wget, all files:
    wget --timestamping 
        'ftp://hgdownload.soe.ucsc.edu/goldenPath/gorGor6/database/*'
With wget, a single file:
    wget --timestamping 
        'ftp://hgdownload.soe.ucsc.edu/goldenPath/gorGor6/database/gc5Base.txt.gz' 
        -O gc5Base.txt.gz

To uncompress the *.txt.gz files:
    gunzip <table>.txt.gz
The tables can be loaded directly from the .txt.gz compressed file.
It is not necessary to uncompress them to load into a database,
as shown in the example below.

To load one of the tables directly into your local mirror database,
for example the table chromInfo:
## create table from the sql definition
$ hgsql gorGor6 < chromInfo.sql
## load data from the txt.gz file
$ zcat chromInfo.txt.gz | hgsql gorGor6 --local-infile=1 
        -e 'LOAD DATA LOCAL INFILE "/dev/stdin" INTO TABLE chromInfo;'

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GenBank Data Usage

The GenBank database is designed to provide and encourage access within
the scientific community to the most up to date and comprehensive DNA
sequence information. Therefore, NCBI places no restrictions on the use
or distribution of the GenBank data. However, some submitters may claim
patent, copyright, or other intellectual property rights in all or a
portion of the data they have submitted. NCBI is not in a position to
assess the validity of such claims, and therefore cannot provide comment
or unrestricted permission concerning the use, copying, or distribution
of the information contained in GenBank.
-----------------------------------------------------------------------------
All the files and tables in this directory are freely usable for any purpose.

      Name                        Last modified      Size  Description
Parent Directory - gc5BaseBw.txt.gz 2019-11-19 11:59 66 crisprAllTargets.txt.gz 2019-11-27 14:33 69 ncbiRefSeqOther.txt.gz 2019-11-20 13:57 75 extNcbiRefSeq.txt.gz 2019-11-20 13:57 91 bigFiles.txt.gz 2022-08-14 03:04 119 grp.txt.gz 2019-11-19 12:34 213 history.txt.gz 2019-11-27 14:33 899 hgFindSpec.txt.gz 2021-08-02 14:30 1.0K gc5BaseBw.sql 2019-11-19 11:59 1.3K ncbiRefSeqOther.sql 2019-11-20 13:57 1.3K crisprAllTargets.sql 2019-11-27 14:33 1.3K ncbiRefSeqCds.sql 2019-11-20 13:57 1.3K grp.sql 2019-11-19 12:34 1.3K ncbiRefSeqPepTable.sql 2019-11-20 13:57 1.4K bigFiles.sql 2022-08-14 03:04 1.4K chromInfo.sql 2019-11-19 12:34 1.4K chromAlias.sql 2019-11-19 13:47 1.4K tableDescriptions.sql 2021-03-13 06:37 1.4K ucscToINSDC.sql 2019-11-19 13:44 1.4K ucscToRefSeq.sql 2019-11-19 20:41 1.4K extNcbiRefSeq.sql 2019-11-20 13:57 1.4K microsat.sql 2019-11-20 11:02 1.5K windowmaskerSdust.sql 2019-11-19 23:41 1.5K cytoBandIdeo.sql 2019-11-19 12:34 1.5K chainHg38Link.sql 2019-11-21 10:07 1.5K chainMm10Link.sql 2019-11-21 08:47 1.5K seqNcbiRefSeq.sql 2019-11-20 13:57 1.5K chainMm39Link.sql 2020-11-24 11:07 1.6K tableList.sql 2022-08-14 03:04 1.6K history.sql 2019-11-27 14:33 1.6K gap.sql 2019-11-19 10:40 1.6K gold.sql 2019-11-19 10:40 1.7K genscan.sql 2019-11-20 12:43 1.7K cpgIslandExt.sql 2019-11-20 11:07 1.7K chainHg38.sql 2019-11-21 10:06 1.7K chainMm10.sql 2019-11-21 08:43 1.7K refFlat.sql 2020-05-06 15:21 1.7K cpgIslandExtUnmasked.sql 2019-11-19 13:32 1.7K xenoRefFlat.sql 2020-05-06 15:36 1.7K chainMm39.sql 2020-11-24 11:03 1.7K hgFindSpec.sql 2021-08-02 14:30 1.8K mrnaOrientInfo.sql 2019-12-05 15:40 1.8K rmsk.sql 2019-11-19 20:10 1.9K refGene.sql 2020-05-06 15:21 1.9K simpleRepeat.sql 2019-11-19 17:36 1.9K ncbiRefSeq.sql 2019-11-20 12:12 1.9K nestedRepeats.sql 2019-11-19 20:12 1.9K xenoRefGene.sql 2020-05-06 15:36 1.9K augustusGene.sql 2019-11-20 14:04 1.9K ncbiRefSeqCurated.sql 2019-11-20 12:12 2.0K ncbiRefSeqPredicted.sql 2019-11-20 12:12 2.0K ncbiRefSeqLink.sql 2019-11-20 12:12 2.0K trackDb.sql 2021-08-02 14:30 2.1K netHg38.sql 2019-11-21 10:08 2.1K netMm10.sql 2019-11-21 08:51 2.1K all_mrna.sql 2019-12-05 11:48 2.1K refSeqAli.sql 2019-12-05 12:00 2.1K netMm39.sql 2020-11-24 11:11 2.1K ncbiRefSeqPsl.sql 2019-11-20 12:12 2.1K xenoRefSeqAli.sql 2020-05-06 15:36 2.1K tableList.txt.gz 2022-08-14 03:04 2.9K tableDescriptions.txt.gz 2021-03-13 06:37 6.0K mrnaOrientInfo.txt.gz 2019-12-05 15:40 12K gap.txt.gz 2019-11-19 10:40 14K refFlat.txt.gz 2020-05-06 15:21 15K refSeqAli.txt.gz 2019-12-05 12:00 17K ncbiRefSeqCurated.txt.gz 2019-11-20 12:12 17K refGene.txt.gz 2020-05-06 15:21 18K all_mrna.txt.gz 2019-12-05 11:48 21K cytoBandIdeo.txt.gz 2019-11-19 12:34 31K trackDb.txt.gz 2021-08-02 14:30 33K chromInfo.txt.gz 2019-11-19 12:34 34K ucscToRefSeq.txt.gz 2019-11-19 20:41 46K ucscToINSDC.txt.gz 2019-11-19 13:44 49K chromAlias.txt.gz 2019-11-19 13:47 56K gold.txt.gz 2019-11-19 10:40 81K microsat.txt.gz 2019-11-20 11:02 307K ncbiRefSeqCds.txt.gz 2019-11-20 13:57 350K cpgIslandExt.txt.gz 2019-11-20 11:07 579K seqNcbiRefSeq.txt.gz 2019-11-20 13:57 947K cpgIslandExtUnmasked.txt.gz 2019-11-19 13:32 951K ncbiRefSeqLink.txt.gz 2019-11-20 12:12 1.6M augustusGene.txt.gz 2019-11-20 14:04 2.2M genscan.txt.gz 2019-11-20 12:43 2.8M ncbiRefSeqPredicted.txt.gz 2019-11-20 12:12 3.3M ncbiRefSeq.txt.gz 2019-11-20 12:12 3.3M ncbiRefSeqPsl.txt.gz 2019-11-20 12:12 4.3M netHg38.txt.gz 2019-11-21 10:08 6.2M ncbiRefSeqPepTable.txt.gz 2019-11-20 13:57 9.1M nestedRepeats.txt.gz 2019-11-19 20:12 17M xenoRefFlat.txt.gz 2020-05-06 15:36 21M xenoRefGene.txt.gz 2020-05-06 15:36 23M xenoRefSeqAli.txt.gz 2020-05-06 15:36 25M simpleRepeat.txt.gz 2019-11-19 17:36 25M chainHg38.txt.gz 2019-11-21 10:06 48M netMm10.txt.gz 2019-11-21 08:51 81M netMm39.txt.gz 2020-11-24 11:11 81M chainMm39.txt.gz 2020-11-24 11:03 96M chainMm10.txt.gz 2019-11-21 08:43 99M rmsk.txt.gz 2019-11-19 20:10 137M windowmaskerSdust.txt.gz 2019-11-19 23:41 143M chainHg38Link.txt.gz 2019-11-21 10:07 166M chainMm39Link.txt.gz 2020-11-24 11:07 542M chainMm10Link.txt.gz 2019-11-21 08:47 567M