This directory contains zipped humor (special version of multiz)
multiple alignments of the mouse (mm3, Feb.2003) assembly and the rat
(rn3, Jun. 2003) assembly to the human (hg16, Jul. 2003) genome.
The chr*.maf.gz files each contain all the alignments for a particular
human chromosome.
The upstream*.maf.gz files contain alignments in regions upstream of
annotated transcription start for RefSeq genes with annotated 5' UTRs.
These files differ from the standard MAF format: they display
alignments that extend from start to end of the upstream region in
human, whether or not alignments actually exist. In situations where no
alignments exist or the alignments of one or more species are missing,
dot (".") is used as a placeholder. Multiple regions of an assembly's
sequence may align to a single region in human; therefore, only the
species name is displayed in the alignment data and no position information
is recorded. The alignment score is always zero in these files.
For a description of the multiple alignment format (MAF), see
http://genome.ucsc.edu/goldenPath/help/maf.html.
Name Last modified Size Description
Parent Directory -
chr1.hmr.maf.gz 2003-10-27 16:06 96M
chr10.hmr.maf.gz 2003-10-27 16:06 57M
chr10_random.hmr.maf.gz 2003-10-27 16:06 342K
chr11.hmr.maf.gz 2003-10-27 16:06 57M
chr12.hmr.maf.gz 2003-10-27 16:06 53M
chr13.hmr.maf.gz 2003-10-27 16:06 37M
chr13_random.hmr.maf.gz 2003-10-27 16:06 78K
chr14.hmr.maf.gz 2003-10-27 16:06 38M
chr15.hmr.maf.gz 2003-10-27 16:06 37M
chr15_random.hmr.maf.gz 2003-10-27 16:06 355K
chr16.hmr.maf.gz 2003-10-27 16:06 34M
chr17.hmr.maf.gz 2003-10-27 16:06 35M
chr17_random.hmr.maf.gz 2003-10-27 16:06 495K
chr18.hmr.maf.gz 2003-10-27 16:06 31M
chr18_random.hmr.maf.gz 2003-10-27 16:06 2.7K
chr1_random.hmr.maf.gz 2003-10-27 16:06 1.7M
chr19.hmr.maf.gz 2003-10-27 16:06 15M
chr2.hmr.maf.gz 2003-10-27 16:06 103M
chr20.hmr.maf.gz 2003-10-27 16:06 26M
chr21.hmr.maf.gz 2003-10-27 16:06 12M
chr2_random.hmr.maf.gz 2003-10-27 16:07 141K
chr22.hmr.maf.gz 2003-10-27 16:07 13M
chr3.hmr.maf.gz 2003-10-27 16:07 86M
chr3_random.hmr.maf.gz 2003-10-27 16:07 337K
chr4.hmr.maf.gz 2003-10-27 16:07 74M
chr4_random.hmr.maf.gz 2003-10-27 16:07 122K
chr5.hmr.maf.gz 2003-10-27 16:07 77M
chr5_random.hmr.maf.gz 2003-10-27 16:07 30K
chr6.hmr.maf.gz 2003-10-27 16:07 70M
chr6_random.hmr.maf.gz 2003-10-27 16:07 664K
chr7.hmr.maf.gz 2003-10-27 16:07 63M
chr7_random.hmr.maf.gz 2003-10-27 16:07 95K
chr8.hmr.maf.gz 2003-10-27 16:07 59M
chr8_random.hmr.maf.gz 2003-10-27 16:07 206K
chr9.hmr.maf.gz 2003-10-27 16:07 50M
chr9_random.hmr.maf.gz 2003-10-27 16:07 591K
chrM.hmr.maf.gz 2003-10-27 16:07 18K
chrUn_random.hmr.maf.gz 2003-10-27 16:07 908K
chrX.hmr.maf.gz 2003-10-27 16:07 49M
chrX_random.hmr.maf.gz 2003-10-27 16:07 701K
chrY.hmr.maf.gz 2003-10-27 16:07 2.9M
upstream2000.maf.gz 2004-02-02 15:29 25M
upstream5000.maf.gz 2004-02-02 15:38 59M
upstream1000.maf.gz 2004-03-01 17:44 13M