This directory contains zipped humor (special version of multiz)
multiple alignments of the mouse (mm3, Feb.2003) assembly and the rat
(rn3, Jun. 2003) assembly to the human (hg16, Jul. 2003) genome.
The chr*.maf.gz files each contain all the alignments for a particular
human chromosome.
The upstream*.maf.gz files contain alignments in regions upstream of
annotated transcription start for RefSeq genes with annotated 5' UTRs.
These files differ from the standard MAF format: they display
alignments that extend from start to end of the upstream region in
human, whether or not alignments actually exist. In situations where no
alignments exist or the alignments of one or more species are missing,
dot (".") is used as a placeholder. Multiple regions of an assembly's
sequence may align to a single region in human; therefore, only the
species name is displayed in the alignment data and no position information
is recorded. The alignment score is always zero in these files.
For a description of the multiple alignment format (MAF), see
http://genome.ucsc.edu/goldenPath/help/maf.html.
Name Last modified Size Description
Parent Directory -
upstream1000.maf.gz 2004-03-01 17:44 13M
upstream5000.maf.gz 2004-02-02 15:38 59M
upstream2000.maf.gz 2004-02-02 15:29 25M
chrY.hmr.maf.gz 2003-10-27 16:07 2.9M
chrX_random.hmr.maf.gz 2003-10-27 16:07 701K
chrX.hmr.maf.gz 2003-10-27 16:07 49M
chrUn_random.hmr.maf.gz 2003-10-27 16:07 908K
chrM.hmr.maf.gz 2003-10-27 16:07 18K
chr9_random.hmr.maf.gz 2003-10-27 16:07 591K
chr9.hmr.maf.gz 2003-10-27 16:07 50M
chr8_random.hmr.maf.gz 2003-10-27 16:07 206K
chr8.hmr.maf.gz 2003-10-27 16:07 59M
chr7_random.hmr.maf.gz 2003-10-27 16:07 95K
chr7.hmr.maf.gz 2003-10-27 16:07 63M
chr6_random.hmr.maf.gz 2003-10-27 16:07 664K
chr6.hmr.maf.gz 2003-10-27 16:07 70M
chr5_random.hmr.maf.gz 2003-10-27 16:07 30K
chr5.hmr.maf.gz 2003-10-27 16:07 77M
chr4_random.hmr.maf.gz 2003-10-27 16:07 122K
chr4.hmr.maf.gz 2003-10-27 16:07 74M
chr3_random.hmr.maf.gz 2003-10-27 16:07 337K
chr3.hmr.maf.gz 2003-10-27 16:07 86M
chr22.hmr.maf.gz 2003-10-27 16:07 13M
chr2_random.hmr.maf.gz 2003-10-27 16:07 141K
chr21.hmr.maf.gz 2003-10-27 16:06 12M
chr20.hmr.maf.gz 2003-10-27 16:06 26M
chr2.hmr.maf.gz 2003-10-27 16:06 103M
chr19.hmr.maf.gz 2003-10-27 16:06 15M
chr1_random.hmr.maf.gz 2003-10-27 16:06 1.7M
chr18_random.hmr.maf.gz 2003-10-27 16:06 2.7K
chr18.hmr.maf.gz 2003-10-27 16:06 31M
chr17_random.hmr.maf.gz 2003-10-27 16:06 495K
chr17.hmr.maf.gz 2003-10-27 16:06 35M
chr16.hmr.maf.gz 2003-10-27 16:06 34M
chr15_random.hmr.maf.gz 2003-10-27 16:06 355K
chr15.hmr.maf.gz 2003-10-27 16:06 37M
chr14.hmr.maf.gz 2003-10-27 16:06 38M
chr13_random.hmr.maf.gz 2003-10-27 16:06 78K
chr13.hmr.maf.gz 2003-10-27 16:06 37M
chr12.hmr.maf.gz 2003-10-27 16:06 53M
chr11.hmr.maf.gz 2003-10-27 16:06 57M
chr10_random.hmr.maf.gz 2003-10-27 16:06 342K
chr10.hmr.maf.gz 2003-10-27 16:06 57M
chr1.hmr.maf.gz 2003-10-27 16:06 96M