This directory contains the regPotential7X data values.

(These data were corrected for chroms 4,8,9 to add some missing
data to the end of the chromosomes.  Updated 03 August 2007 in the UCSC
genome browser)

Please note the chromosome positions given in these files
are 1-relative positions.  For example the first location
of data on chr1 is given as base position 1362:

variableStep chrom=chr1
1362    0.0

The first base position on chr1 would be given as 1.
This is different than the usual bed-format data, which would
specify these two example base positions as:
chr1  0  1
chr1  1361  1362


Please note the description page for this data set in the genome
browser when viewing this data track:
"Reg Potential 7 species" - " ESPERR Regulatory Potential (7 species)"


Work on RP scores is performed by members of the
<a href="" target="_blank">Comparative Genomics and
Bioinformatics Center at Penn State University</a>. More information on this
research and the collection of known regulatory elements used in training the
score can be found at this site.


King DC, Taylor J, Elnitski L, Chiaromonte F, Miller W, Hardison RC. (2005).
<a href="" target="_blank">
Evaluation of regulatory potential and conservation scores for detecting
cis-regulatory modules in aligned mammalian genome sequences.</a>.
<em>Genome Res.</em> 15(8):1051-60.

Kolbe D, Taylor J, Elnitski L, Eswara P, Li J, Miller W, Hardison RC and
Chiaromonte F. (2004).
<a href="" target="_blank">
Regulatory potential scores from genome-wide three-way
alignments of human, mouse, and rat</a>.
<em>Genome Res.</em> 14(4):700-707. </p>

If you plan to download a large file or multiple files from this 
directory, we recommend you use ftp rather than downloading the files 
via our website. To do so, ftp to, then go to 
the directory goldenPath/hg18/phastCons. To download multiple files, 
use the "mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory)

All the files in this directory are freely available for public use.
For data use restrictions regarding the genome assemblies used in this
annotation, see

      Name                         Last modified      Size  Description
Parent Directory - chr1.regPotential7X.hg17.gz 2006-06-13 11:14 514M chr2.regPotential7X.hg17.gz 2006-06-13 11:50 529M chr3.regPotential7X.hg17.gz 2006-06-13 12:21 437M chr4.regPotential7X.hg17.gz 2006-11-15 19:37 373M chr5.regPotential7X.hg17.gz 2006-06-13 12:34 388M chr6.regPotential7X.hg17.gz 2006-06-13 12:51 357M chr7.regPotential7X.hg17.gz 2006-06-13 13:03 320M chr8.regPotential7X.hg17.gz 2006-11-15 21:55 295M chr9.regPotential7X.hg17.gz 2006-11-16 07:38 259M chr10.regPotential7X.hg17.gz 2006-06-13 13:36 295M chr11.regPotential7X.hg17.gz 2006-06-13 13:41 300M chr12.regPotential7X.hg17.gz 2006-06-13 13:56 274M chr13.regPotential7X.hg17.gz 2006-06-13 13:55 191M chr14.regPotential7X.hg17.gz 2006-06-13 14:09 197M chr15.regPotential7X.hg17.gz 2006-06-13 14:08 193M chr16.regPotential7X.hg17.gz 2006-06-13 14:20 180M chr17.regPotential7X.hg17.gz 2006-06-13 14:20 181M chr18.regPotential7X.hg17.gz 2006-06-13 14:31 158M chr19.regPotential7X.hg17.gz 2006-06-13 14:26 94M chr20.regPotential7X.hg17.gz 2006-06-13 14:34 140M chr21.regPotential7X.hg17.gz 2006-06-13 14:35 68M chr22.regPotential7X.hg17.gz 2006-06-13 14:39 77M chrX.regPotential7X.hg17.gz 2006-06-13 14:50 247M chrY.regPotential7X.hg17.gz 2006-06-13 14:40 17M md5sum.txt 2007-09-07 12:18 1.5K